Query 002209
Match_columns 953
No_of_seqs 628 out of 4602
Neff 9.8
Searched_HMMs 46136
Date Thu Mar 28 19:00:08 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/002209.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/002209hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 COG1506 DAP2 Dipeptidyl aminop 100.0 3.8E-44 8.2E-49 420.3 54.9 600 102-900 6-619 (620)
2 PRK10115 protease 2; Provision 100.0 4.6E-40 1E-44 387.1 53.2 322 551-900 337-678 (686)
3 KOG2281 Dipeptidyl aminopeptid 100.0 3E-32 6.5E-37 290.0 32.9 350 520-896 498-866 (867)
4 KOG2100 Dipeptidyl aminopeptid 100.0 1.1E-30 2.3E-35 307.7 49.0 325 550-898 412-748 (755)
5 COG1770 PtrB Protease II [Amin 100.0 3.6E-25 7.9E-30 241.0 50.5 299 551-877 339-657 (682)
6 PF00326 Peptidase_S9: Prolyl 99.9 5.7E-27 1.2E-31 240.3 16.2 195 704-900 6-212 (213)
7 PRK01029 tolB translocation pr 99.9 1.1E-23 2.3E-28 236.8 29.1 272 101-500 129-412 (428)
8 PRK01029 tolB translocation pr 99.9 1.8E-22 3.8E-27 226.9 29.7 265 194-572 142-415 (428)
9 PRK05137 tolB translocation pr 99.9 2.5E-22 5.4E-27 228.6 28.8 229 163-491 182-414 (435)
10 PRK03629 tolB translocation pr 99.9 3.4E-22 7.5E-27 225.8 29.3 228 163-491 179-408 (429)
11 PRK04043 tolB translocation pr 99.9 1E-21 2.2E-26 218.9 27.8 230 164-491 170-402 (419)
12 PRK02889 tolB translocation pr 99.9 2.1E-21 4.6E-26 219.7 28.6 227 164-491 177-405 (427)
13 KOG2237 Predicted serine prote 99.9 7.4E-20 1.6E-24 197.7 38.2 290 593-899 391-707 (712)
14 PRK04792 tolB translocation pr 99.9 6E-21 1.3E-25 216.4 30.0 227 164-491 199-427 (448)
15 PRK05137 tolB translocation pr 99.9 5.5E-21 1.2E-25 217.6 29.6 254 200-568 165-420 (435)
16 PRK03629 tolB translocation pr 99.9 8.1E-21 1.7E-25 214.6 30.1 253 201-572 164-418 (429)
17 COG4946 Uncharacterized protei 99.9 2.2E-20 4.9E-25 192.2 29.0 388 115-609 43-514 (668)
18 PRK04922 tolB translocation pr 99.9 5.7E-21 1.2E-25 217.1 27.4 234 163-499 184-419 (433)
19 KOG0293 WD40 repeat-containing 99.9 4.6E-23 1E-27 208.5 8.5 355 13-487 152-513 (519)
20 PRK02889 tolB translocation pr 99.9 5.1E-21 1.1E-25 216.6 25.7 226 110-465 197-424 (427)
21 PRK04043 tolB translocation pr 99.9 6.4E-21 1.4E-25 212.5 25.5 228 111-463 190-419 (419)
22 PRK04792 tolB translocation pr 99.9 8.3E-21 1.8E-25 215.3 25.9 226 110-465 219-446 (448)
23 PRK00178 tolB translocation pr 99.9 1.7E-20 3.6E-25 214.2 28.5 227 164-491 180-408 (430)
24 COG1505 Serine proteases of th 99.9 1.9E-20 4.1E-25 201.5 24.3 287 592-898 348-647 (648)
25 PRK04922 tolB translocation pr 99.9 8.2E-20 1.8E-24 207.6 29.9 255 200-572 167-423 (433)
26 PRK01742 tolB translocation pr 99.9 8E-20 1.7E-24 207.2 28.3 221 163-491 184-406 (429)
27 PRK00178 tolB translocation pr 99.9 2E-19 4.2E-24 205.4 30.3 255 199-571 161-417 (430)
28 KOG1455 Lysophospholipase [Lip 99.8 6.6E-20 1.4E-24 183.0 20.4 232 639-897 27-312 (313)
29 PRK01742 tolB translocation pr 99.8 5.1E-19 1.1E-23 200.7 25.2 221 110-466 205-426 (429)
30 PLN02298 hydrolase, alpha/beta 99.8 7.9E-19 1.7E-23 193.2 25.5 244 633-901 26-321 (330)
31 PRK10566 esterase; Provisional 99.8 7.3E-19 1.6E-23 185.4 23.6 219 651-898 11-249 (249)
32 PRK13604 luxD acyl transferase 99.8 5.1E-19 1.1E-23 183.2 20.8 205 644-878 14-246 (307)
33 PF05448 AXE1: Acetyl xylan es 99.8 1.7E-18 3.6E-23 184.8 21.0 233 635-897 52-320 (320)
34 TIGR02821 fghA_ester_D S-formy 99.8 3.5E-18 7.6E-23 181.8 22.9 237 639-897 13-274 (275)
35 PRK05077 frsA fermentation/res 99.8 5.7E-18 1.2E-22 189.1 24.2 230 636-898 165-413 (414)
36 PLN02442 S-formylglutathione h 99.8 4.2E-18 9E-23 181.3 22.1 239 638-898 17-281 (283)
37 PF01738 DLH: Dienelactone hyd 99.8 1.4E-18 2.9E-23 178.7 17.7 201 652-898 1-218 (218)
38 PLN02385 hydrolase; alpha/beta 99.8 1.1E-17 2.5E-22 185.1 24.9 233 640-898 62-346 (349)
39 PHA02857 monoglyceride lipase; 99.8 1.8E-17 3.9E-22 177.8 23.9 223 644-897 5-273 (276)
40 TIGR02800 propeller_TolB tol-p 99.8 5.6E-17 1.2E-21 185.2 29.4 227 164-491 171-399 (417)
41 PF00930 DPPIV_N: Dipeptidyl p 99.8 5.2E-17 1.1E-21 179.2 28.0 332 117-609 1-353 (353)
42 PRK10749 lysophospholipase L2; 99.8 7E-17 1.5E-21 177.0 24.6 230 639-897 30-329 (330)
43 KOG1552 Predicted alpha/beta h 99.8 1.1E-17 2.5E-22 164.0 16.2 219 638-898 34-253 (258)
44 TIGR02800 propeller_TolB tol-p 99.8 2.1E-16 4.6E-21 180.5 29.4 252 199-570 154-407 (417)
45 COG0412 Dienelactone hydrolase 99.8 9.7E-17 2.1E-21 164.2 23.7 212 640-899 3-235 (236)
46 KOG0271 Notchless-like WD40 re 99.8 8.2E-17 1.8E-21 162.2 22.2 325 111-599 118-467 (480)
47 KOG4391 Predicted alpha/beta h 99.8 1.4E-17 3E-22 155.5 13.9 237 630-901 45-286 (300)
48 COG0823 TolB Periplasmic compo 99.7 1E-16 2.2E-21 177.0 20.4 226 111-465 195-423 (425)
49 PRK10162 acetyl esterase; Prov 99.7 3.4E-16 7.3E-21 169.7 22.5 231 638-899 56-317 (318)
50 PLN02652 hydrolase; alpha/beta 99.7 7.3E-16 1.6E-20 170.6 25.2 231 639-899 110-389 (395)
51 COG4946 Uncharacterized protei 99.7 9.1E-15 2E-19 151.3 27.2 126 314-476 382-509 (668)
52 COG3458 Acetyl esterase (deace 99.7 2.1E-16 4.5E-21 153.8 14.4 232 636-897 53-317 (321)
53 PRK05371 x-prolyl-dipeptidyl a 99.7 3.8E-15 8.3E-20 177.1 27.5 193 703-902 270-524 (767)
54 COG2267 PldB Lysophospholipase 99.7 4.2E-15 9.1E-20 158.1 22.1 229 640-899 10-296 (298)
55 COG1647 Esterase/lipase [Gener 99.7 1.7E-15 3.7E-20 143.7 16.7 198 671-895 16-242 (243)
56 COG0823 TolB Periplasmic compo 99.7 8.3E-15 1.8E-19 161.9 24.6 219 215-529 169-389 (425)
57 PF00930 DPPIV_N: Dipeptidyl p 99.7 1.5E-14 3.3E-19 159.6 26.8 297 197-628 1-327 (353)
58 PF14583 Pectate_lyase22: Olig 99.7 1.1E-13 2.5E-18 145.6 29.6 325 190-617 37-383 (386)
59 PRK11460 putative hydrolase; P 99.6 1.6E-14 3.5E-19 148.9 21.9 130 738-900 82-211 (232)
60 COG4099 Predicted peptidase [G 99.6 1.1E-15 2.5E-20 150.0 11.9 208 646-896 168-384 (387)
61 PF14583 Pectate_lyase22: Olig 99.6 1.2E-13 2.6E-18 145.5 27.4 312 111-529 38-370 (386)
62 TIGR01840 esterase_phb esteras 99.6 5.3E-15 1.2E-19 151.0 15.3 188 654-861 1-197 (212)
63 TIGR00976 /NonD putative hydro 99.6 1.8E-14 3.8E-19 168.6 19.8 232 645-902 2-308 (550)
64 PF12715 Abhydrolase_7: Abhydr 99.6 2.4E-15 5.1E-20 157.2 10.9 215 633-872 82-343 (390)
65 TIGR01607 PST-A Plasmodium sub 99.6 5.9E-14 1.3E-18 153.3 20.1 235 644-895 2-331 (332)
66 COG2945 Predicted hydrolase of 99.6 2.4E-14 5.3E-19 132.8 14.1 201 640-895 5-205 (210)
67 PF06500 DUF1100: Alpha/beta h 99.6 2E-14 4.4E-19 153.5 15.5 227 636-898 162-410 (411)
68 COG0657 Aes Esterase/lipase [L 99.6 1.4E-13 3.1E-18 149.8 20.1 224 646-896 58-309 (312)
69 PF02129 Peptidase_S15: X-Pro 99.6 6.6E-14 1.4E-18 148.9 16.9 213 648-876 1-271 (272)
70 TIGR03100 hydr1_PEP hydrolase, 99.6 2.7E-13 5.8E-18 144.3 21.5 230 640-896 3-274 (274)
71 KOG1515 Arylacetamide deacetyl 99.5 4.1E-13 8.8E-18 142.2 20.6 232 640-897 64-335 (336)
72 TIGR03611 RutD pyrimidine util 99.5 2.4E-13 5.2E-18 144.0 19.3 194 670-895 13-256 (257)
73 PF12695 Abhydrolase_5: Alpha/ 99.5 1.4E-13 3.1E-18 131.6 15.5 129 703-876 17-145 (145)
74 KOG0318 WD40 repeat stress pro 99.5 2.9E-11 6.2E-16 127.6 33.4 139 189-352 191-341 (603)
75 KOG0272 U4/U6 small nuclear ri 99.5 1.5E-13 3.4E-18 140.9 15.6 271 106-485 173-458 (459)
76 PF07859 Abhydrolase_3: alpha/ 99.5 6.3E-14 1.4E-18 143.6 12.6 180 673-877 1-209 (211)
77 PF02230 Abhydrolase_2: Phosph 99.5 9.8E-13 2.1E-17 134.7 20.4 129 740-898 87-216 (216)
78 PLN02511 hydrolase 99.5 4E-13 8.8E-18 149.8 18.2 236 639-900 71-368 (388)
79 TIGR03343 biphenyl_bphD 2-hydr 99.5 3.8E-13 8.2E-18 144.9 17.4 174 706-895 54-281 (282)
80 TIGR03866 PQQ_ABC_repeats PQQ- 99.5 3.6E-11 7.7E-16 130.7 32.8 268 163-569 11-288 (300)
81 PRK00870 haloalkane dehalogena 99.5 7.8E-13 1.7E-17 143.7 19.5 224 639-897 21-301 (302)
82 PF10503 Esterase_phd: Esteras 99.5 3.1E-13 6.8E-18 134.9 14.5 187 652-861 1-198 (220)
83 KOG0271 Notchless-like WD40 re 99.5 7.9E-13 1.7E-17 133.8 17.1 284 110-528 159-470 (480)
84 TIGR03056 bchO_mg_che_rel puta 99.5 1.8E-12 3.9E-17 139.3 19.8 194 670-895 28-278 (278)
85 PRK10673 acyl-CoA esterase; Pr 99.5 2.6E-12 5.6E-17 136.1 20.4 195 670-896 16-254 (255)
86 PLN00021 chlorophyllase 99.5 3.1E-12 6.7E-17 136.8 20.8 209 650-902 37-288 (313)
87 TIGR02240 PHA_depoly_arom poly 99.5 3.2E-12 6.8E-17 137.0 20.8 211 647-897 9-266 (276)
88 PRK10985 putative hydrolase; P 99.5 1.1E-12 2.5E-17 143.2 17.2 228 643-898 35-321 (324)
89 cd00200 WD40 WD40 domain, foun 99.5 1.4E-11 3E-16 132.0 25.3 264 110-528 11-280 (289)
90 KOG4178 Soluble epoxide hydrol 99.5 8.7E-12 1.9E-16 127.6 21.8 199 670-897 44-320 (322)
91 TIGR02427 protocat_pcaD 3-oxoa 99.5 7.7E-13 1.7E-17 139.3 14.5 193 670-894 13-250 (251)
92 PLN02824 hydrolase, alpha/beta 99.4 4.5E-12 9.7E-17 137.2 20.7 195 671-897 30-294 (294)
93 COG0400 Predicted esterase [Ge 99.4 7E-12 1.5E-16 123.8 19.6 130 737-898 77-206 (207)
94 PLN03087 BODYGUARD 1 domain co 99.4 5.3E-12 1.1E-16 141.6 21.1 223 641-896 177-478 (481)
95 KOG0315 G-protein beta subunit 99.4 7E-12 1.5E-16 120.1 18.6 240 110-489 42-290 (311)
96 TIGR01249 pro_imino_pep_1 prol 99.4 3.3E-12 7.2E-17 138.8 18.2 217 643-898 8-306 (306)
97 PLN02872 triacylglycerol lipas 99.4 4.3E-12 9.3E-17 140.0 19.0 245 634-899 39-391 (395)
98 PLN02679 hydrolase, alpha/beta 99.4 5.4E-12 1.2E-16 139.9 19.1 199 670-896 88-356 (360)
99 PLN02965 Probable pheophorbida 99.4 7.5E-12 1.6E-16 132.3 19.0 177 705-896 23-252 (255)
100 TIGR03866 PQQ_ABC_repeats PQQ- 99.4 1.3E-10 2.7E-15 126.4 29.2 246 111-491 33-281 (300)
101 PRK11071 esterase YqiA; Provis 99.4 1.2E-11 2.7E-16 122.9 19.2 149 711-895 31-189 (190)
102 TIGR01836 PHA_synth_III_C poly 99.4 1.4E-11 3.1E-16 136.3 21.4 184 703-896 85-349 (350)
103 PLN02894 hydrolase, alpha/beta 99.4 2.3E-11 5E-16 136.2 22.6 203 670-901 105-389 (402)
104 PRK03592 haloalkane dehalogena 99.4 1.3E-11 2.9E-16 133.6 20.1 211 647-898 14-290 (295)
105 KOG0315 G-protein beta subunit 99.4 6.9E-11 1.5E-15 113.4 21.9 271 163-571 20-299 (311)
106 KOG0273 Beta-transducin family 99.4 6.9E-11 1.5E-15 123.2 23.5 279 105-530 232-514 (524)
107 KOG0279 G protein beta subunit 99.4 6.7E-11 1.4E-15 115.6 21.8 273 110-528 17-302 (315)
108 PRK10439 enterobactin/ferric e 99.4 5.6E-11 1.2E-15 131.9 23.8 205 639-877 180-392 (411)
109 TIGR01738 bioH putative pimelo 99.4 7.8E-12 1.7E-16 131.1 16.3 166 710-894 28-245 (245)
110 TIGR01250 pro_imino_pep_2 prol 99.4 1.2E-11 2.5E-16 133.5 17.4 195 670-895 25-288 (288)
111 TIGR03695 menH_SHCHC 2-succiny 99.4 1E-11 2.2E-16 130.6 16.3 195 671-894 2-250 (251)
112 PRK06489 hypothetical protein; 99.4 3E-11 6.5E-16 134.3 19.5 172 710-897 103-357 (360)
113 PF08840 BAAT_C: BAAT / Acyl-C 99.3 9.9E-12 2.1E-16 125.8 13.9 156 741-899 4-212 (213)
114 PRK14875 acetoin dehydrogenase 99.3 2.5E-11 5.5E-16 136.3 18.5 169 709-896 154-370 (371)
115 PRK10349 carboxylesterase BioH 99.3 2.7E-11 5.8E-16 128.3 17.0 167 710-895 37-254 (256)
116 PRK03204 haloalkane dehalogena 99.3 1.1E-10 2.3E-15 125.4 21.5 196 670-894 34-285 (286)
117 TIGR03101 hydr2_PEP hydrolase, 99.3 2.7E-10 5.9E-15 118.4 23.4 207 642-873 3-243 (266)
118 COG2706 3-carboxymuconate cycl 99.3 1.4E-09 3.1E-14 111.1 27.7 292 163-569 16-332 (346)
119 COG3509 LpqC Poly(3-hydroxybut 99.3 5.4E-11 1.2E-15 119.0 17.0 225 648-898 43-308 (312)
120 cd00200 WD40 WD40 domain, foun 99.3 8.8E-10 1.9E-14 117.9 28.1 245 189-569 10-258 (289)
121 KOG0291 WD40-repeat-containing 99.3 1.1E-09 2.5E-14 120.5 28.5 229 190-530 309-541 (893)
122 KOG3043 Predicted hydrolase re 99.3 1.2E-11 2.5E-16 118.2 11.2 164 704-898 59-241 (242)
123 PRK07581 hypothetical protein; 99.3 4.9E-11 1.1E-15 131.8 18.2 181 707-899 66-338 (339)
124 COG0429 Predicted hydrolase of 99.3 7.6E-11 1.7E-15 120.3 17.2 229 643-899 53-342 (345)
125 KOG0291 WD40-repeat-containing 99.3 6.9E-10 1.5E-14 122.2 25.5 228 110-477 309-542 (893)
126 KOG1446 Histone H3 (Lys4) meth 99.3 1.8E-09 3.8E-14 108.0 26.2 253 189-571 15-273 (311)
127 PLN02578 hydrolase 99.3 9.8E-11 2.1E-15 129.8 19.7 170 709-895 109-353 (354)
128 KOG0272 U4/U6 small nuclear ri 99.3 9.3E-11 2E-15 120.8 17.6 228 189-528 176-407 (459)
129 KOG3101 Esterase D [General fu 99.3 2.4E-11 5.2E-16 113.7 11.6 213 649-878 25-263 (283)
130 COG2936 Predicted acyl esteras 99.3 6.3E-11 1.4E-15 131.2 17.0 240 637-899 17-319 (563)
131 KOG0318 WD40 repeat stress pro 99.3 1.4E-09 3.1E-14 115.0 25.9 296 164-568 40-358 (603)
132 PLN03084 alpha/beta hydrolase 99.3 3.3E-10 7.1E-15 124.9 22.3 193 670-895 127-382 (383)
133 KOG0973 Histone transcription 99.3 2E-10 4.3E-15 132.1 20.9 147 189-416 70-237 (942)
134 KOG0286 G-protein beta subunit 99.3 6.7E-10 1.5E-14 109.3 21.4 270 110-484 57-342 (343)
135 PRK08775 homoserine O-acetyltr 99.3 5.4E-11 1.2E-15 131.4 15.4 175 708-897 95-339 (343)
136 PRK11028 6-phosphogluconolacto 99.3 8.8E-09 1.9E-13 113.4 32.7 263 164-528 13-292 (330)
137 KOG4667 Predicted esterase [Li 99.3 1.1E-10 2.3E-15 110.2 14.5 210 638-881 9-244 (269)
138 PF12697 Abhydrolase_6: Alpha/ 99.3 8.5E-12 1.8E-16 129.0 8.0 158 704-877 17-217 (228)
139 KOG2096 WD40 repeat protein [G 99.3 5.7E-10 1.2E-14 110.8 20.0 283 109-528 87-392 (420)
140 TIGR01392 homoserO_Ac_trn homo 99.2 2.4E-10 5.3E-15 126.6 18.9 67 825-894 283-350 (351)
141 PRK00175 metX homoserine O-ace 99.2 4.2E-10 9.2E-15 125.7 20.7 70 825-897 304-374 (379)
142 KOG0266 WD40 repeat-containing 99.2 5.4E-10 1.2E-14 127.5 21.9 273 110-486 161-453 (456)
143 KOG0266 WD40 repeat-containing 99.2 1.2E-09 2.6E-14 124.7 24.4 248 190-571 161-420 (456)
144 KOG2055 WD40 repeat protein [G 99.2 5.7E-10 1.2E-14 116.3 18.8 254 163-528 235-501 (514)
145 PF00756 Esterase: Putative es 99.2 1.7E-11 3.7E-16 129.3 7.8 219 649-894 5-251 (251)
146 PF10282 Lactonase: Lactonase, 99.2 4.3E-09 9.4E-14 115.9 27.2 290 164-568 14-332 (345)
147 KOG0293 WD40 repeat-containing 99.2 4.2E-10 9.1E-15 115.4 17.2 194 190-487 226-425 (519)
148 PRK11126 2-succinyl-6-hydroxy- 99.2 3.9E-10 8.4E-15 118.3 17.8 188 670-896 2-241 (242)
149 KOG0286 G-protein beta subunit 99.2 9.7E-09 2.1E-13 101.3 24.8 257 179-570 48-313 (343)
150 KOG0263 Transcription initiati 99.2 3.5E-10 7.5E-15 125.8 16.4 207 176-487 441-649 (707)
151 KOG0305 Anaphase promoting com 99.2 3E-09 6.6E-14 116.4 23.2 250 163-530 197-452 (484)
152 KOG0279 G protein beta subunit 99.2 1.1E-08 2.4E-13 100.3 23.6 278 190-604 17-304 (315)
153 PLN02211 methyl indole-3-aceta 99.2 1E-09 2.2E-14 116.7 17.8 195 670-895 18-268 (273)
154 KOG0265 U5 snRNP-specific prot 99.2 8.5E-09 1.8E-13 102.1 22.2 271 110-528 49-327 (338)
155 KOG1407 WD40 repeat protein [F 99.2 7.8E-09 1.7E-13 100.3 21.5 272 108-531 20-294 (313)
156 KOG2055 WD40 repeat protein [G 99.2 6.3E-10 1.4E-14 116.0 15.1 239 110-486 259-511 (514)
157 PF12740 Chlorophyllase2: Chlo 99.1 2.4E-09 5.2E-14 108.2 18.7 178 653-876 5-205 (259)
158 KOG4627 Kynurenine formamidase 99.1 4E-10 8.6E-15 105.4 11.4 202 637-876 43-247 (270)
159 KOG4409 Predicted hydrolase/ac 99.1 2.1E-09 4.6E-14 110.5 17.1 178 707-896 112-363 (365)
160 PLN00181 protein SPA1-RELATED; 99.1 1.5E-08 3.3E-13 124.8 28.3 231 111-477 486-730 (793)
161 KOG1838 Alpha/beta hydrolase [ 99.1 6.5E-09 1.4E-13 110.7 20.8 238 639-899 93-390 (409)
162 KOG0273 Beta-transducin family 99.1 2.3E-08 4.9E-13 104.8 24.1 268 187-604 234-514 (524)
163 PF08662 eIF2A: Eukaryotic tra 99.1 3.8E-09 8.3E-14 105.2 17.8 175 113-380 10-185 (194)
164 KOG4497 Uncharacterized conser 99.1 6.2E-09 1.3E-13 104.0 18.8 140 113-352 13-154 (447)
165 KOG1454 Predicted hydrolase/ac 99.1 2E-09 4.3E-14 116.0 16.7 173 712-897 86-324 (326)
166 KOG2314 Translation initiation 99.1 9.8E-08 2.1E-12 102.0 28.7 350 99-603 202-557 (698)
167 PRK11028 6-phosphogluconolacto 99.1 6.7E-08 1.4E-12 106.4 28.7 258 110-491 36-308 (330)
168 PF02897 Peptidase_S9_N: Proly 99.1 8E-08 1.7E-12 109.4 30.0 318 199-626 77-413 (414)
169 PF03583 LIP: Secretory lipase 99.1 7.4E-09 1.6E-13 110.0 20.0 191 703-902 17-286 (290)
170 KOG1446 Histone H3 (Lys4) meth 99.1 9.9E-08 2.2E-12 95.7 26.4 252 109-501 15-272 (311)
171 TIGR02658 TTQ_MADH_Hv methylam 99.1 5.9E-08 1.3E-12 104.0 26.0 134 336-491 198-332 (352)
172 PRK13616 lipoprotein LpqB; Pro 99.1 2.7E-09 5.8E-14 123.3 16.8 113 109-261 350-465 (591)
173 KOG1407 WD40 repeat protein [F 99.1 3.2E-08 6.9E-13 96.2 21.1 229 190-530 22-252 (313)
174 PRK06765 homoserine O-acetyltr 99.0 6.5E-09 1.4E-13 114.9 18.3 69 825-896 318-387 (389)
175 PF08662 eIF2A: Eukaryotic tra 99.0 5.4E-09 1.2E-13 104.1 15.7 125 310-475 35-163 (194)
176 KOG0263 Transcription initiati 99.0 5.7E-09 1.2E-13 116.3 16.3 146 332-529 494-639 (707)
177 PRK05855 short chain dehydroge 99.0 3.3E-09 7.1E-14 127.1 15.6 213 645-897 8-292 (582)
178 COG2706 3-carboxymuconate cycl 99.0 7.1E-07 1.5E-11 91.8 29.8 252 316-626 68-332 (346)
179 PF03403 PAF-AH_p_II: Platelet 99.0 1E-08 2.3E-13 112.6 17.8 189 668-901 98-362 (379)
180 TIGR02658 TTQ_MADH_Hv methylam 99.0 4.5E-07 9.7E-12 97.3 28.6 92 163-261 27-122 (352)
181 COG2382 Fes Enterochelin ester 99.0 1.1E-08 2.5E-13 103.7 15.4 220 640-898 70-296 (299)
182 PLN02980 2-oxoglutarate decarb 99.0 1.4E-08 3.1E-13 131.9 20.5 199 670-897 1371-1639(1655)
183 COG0627 Predicted esterase [Ge 99.0 6.1E-09 1.3E-13 110.1 13.4 145 752-899 143-313 (316)
184 PF02897 Peptidase_S9_N: Proly 99.0 1.2E-07 2.5E-12 108.1 25.1 271 191-569 126-413 (414)
185 KOG0772 Uncharacterized conser 99.0 5.9E-08 1.3E-12 102.7 20.1 251 149-490 175-446 (641)
186 PF10282 Lactonase: Lactonase, 99.0 4.1E-07 8.9E-12 100.3 28.1 267 108-491 36-326 (345)
187 KOG2096 WD40 repeat protein [G 98.9 1.2E-07 2.6E-12 94.6 20.7 195 335-603 191-393 (420)
188 KOG0296 Angio-associated migra 98.9 6.6E-07 1.4E-11 91.3 26.4 290 110-528 66-387 (399)
189 KOG2984 Predicted hydrolase [G 98.9 1.7E-09 3.8E-14 100.8 7.4 172 712-896 71-275 (277)
190 KOG4497 Uncharacterized conser 98.9 5.1E-09 1.1E-13 104.6 10.9 216 193-530 13-231 (447)
191 PF08538 DUF1749: Protein of u 98.9 9E-09 1.9E-13 106.0 12.8 185 703-894 54-302 (303)
192 KOG0973 Histone transcription 98.9 5.7E-08 1.2E-12 112.3 20.4 104 189-352 130-240 (942)
193 PF02239 Cytochrom_D1: Cytochr 98.9 1.3E-07 2.9E-12 103.9 22.6 305 113-566 41-353 (369)
194 KOG0772 Uncharacterized conser 98.9 1.7E-07 3.7E-12 99.3 21.5 246 190-529 169-429 (641)
195 PRK13616 lipoprotein LpqB; Pro 98.9 8.3E-08 1.8E-12 111.1 20.7 178 190-450 351-533 (591)
196 KOG0282 mRNA splicing factor [ 98.9 2.7E-08 5.8E-13 104.8 14.9 221 163-490 237-463 (503)
197 PRK07868 acyl-CoA synthetase; 98.9 1.3E-07 2.8E-12 119.0 23.7 230 652-904 49-368 (994)
198 TIGR01838 PHA_synth_I poly(R)- 98.9 8.6E-08 1.9E-12 109.0 19.8 88 703-795 211-303 (532)
199 PTZ00421 coronin; Provisional 98.9 8.9E-07 1.9E-11 101.0 27.5 169 332-567 126-297 (493)
200 KOG1273 WD40 repeat protein [G 98.9 4.9E-07 1.1E-11 90.3 21.8 264 98-503 13-292 (405)
201 KOG0265 U5 snRNP-specific prot 98.9 1.5E-06 3.2E-11 86.6 24.5 252 189-568 48-304 (338)
202 PLN00181 protein SPA1-RELATED; 98.8 2.4E-06 5.1E-11 105.5 32.1 229 189-529 484-728 (793)
203 PF00561 Abhydrolase_1: alpha/ 98.8 3.2E-09 7E-14 110.2 5.6 154 713-877 1-216 (230)
204 KOG0639 Transducin-like enhanc 98.8 1.5E-07 3.2E-12 99.2 17.5 217 164-487 441-663 (705)
205 PTZ00421 coronin; Provisional 98.8 1.8E-06 3.8E-11 98.5 27.8 200 189-490 76-291 (493)
206 KOG0275 Conserved WD40 repeat- 98.8 5.2E-08 1.1E-12 97.0 12.6 255 111-471 216-495 (508)
207 KOG2112 Lysophospholipase [Lip 98.8 1.8E-07 4E-12 89.7 15.8 115 755-896 89-203 (206)
208 KOG2314 Translation initiation 98.8 1.6E-06 3.4E-11 93.1 24.3 301 104-529 245-557 (698)
209 KOG3847 Phospholipase A2 (plat 98.8 1.1E-07 2.3E-12 95.3 14.6 190 667-901 115-375 (399)
210 PF05728 UPF0227: Uncharacteri 98.8 2.4E-07 5.1E-12 90.7 16.9 122 758-894 58-186 (187)
211 KOG0296 Angio-associated migra 98.8 8.8E-07 1.9E-11 90.4 20.8 266 110-477 108-390 (399)
212 COG5354 Uncharacterized protei 98.8 3.6E-06 7.8E-11 89.8 25.7 336 110-606 34-382 (561)
213 PTZ00420 coronin; Provisional 98.7 4.8E-06 1E-10 95.6 28.1 223 164-487 55-293 (568)
214 cd00312 Esterase_lipase Estera 98.7 3.1E-08 6.6E-13 115.6 10.4 129 651-795 78-214 (493)
215 PF07224 Chlorophyllase: Chlor 98.7 1.8E-07 3.8E-12 92.0 13.7 207 651-901 32-278 (307)
216 KOG0643 Translation initiation 98.7 3.4E-06 7.3E-11 82.7 22.2 281 110-487 12-317 (327)
217 PTZ00420 coronin; Provisional 98.7 6.1E-06 1.3E-10 94.8 28.4 118 332-490 126-249 (568)
218 KOG0645 WD40 repeat protein [G 98.7 2.1E-06 4.7E-11 84.2 20.9 104 107-261 60-168 (312)
219 COG3571 Predicted hydrolase of 98.7 6.9E-07 1.5E-11 80.5 15.6 148 703-878 34-183 (213)
220 KOG0645 WD40 repeat protein [G 98.7 3.7E-06 8E-11 82.6 21.6 150 332-528 62-214 (312)
221 PF09752 DUF2048: Uncharacteri 98.7 8.2E-07 1.8E-11 93.0 18.2 218 652-895 77-347 (348)
222 KOG0284 Polyadenylation factor 98.7 1.6E-07 3.4E-12 97.0 12.6 268 110-528 98-369 (464)
223 KOG1274 WD40 repeat protein [G 98.7 1.4E-06 3E-11 99.0 20.7 256 111-475 16-290 (933)
224 KOG2315 Predicted translation 98.7 1.9E-06 4E-11 93.1 20.5 243 110-475 127-374 (566)
225 KOG0305 Anaphase promoting com 98.7 3.2E-06 7E-11 93.1 22.8 270 189-604 178-452 (484)
226 COG5354 Uncharacterized protei 98.7 1.1E-05 2.4E-10 86.2 25.2 302 105-527 68-377 (561)
227 KOG2315 Predicted translation 98.7 1.6E-05 3.5E-10 86.1 26.8 333 112-606 38-377 (566)
228 KOG2624 Triglyceride lipase-ch 98.6 1E-06 2.3E-11 95.8 17.5 244 634-898 43-399 (403)
229 TIGR01839 PHA_synth_II poly(R) 98.6 1.8E-06 3.8E-11 97.1 19.3 88 702-795 237-329 (560)
230 KOG0306 WD40-repeat-containing 98.6 3.6E-06 7.9E-11 93.5 21.1 269 108-530 373-655 (888)
231 KOG0282 mRNA splicing factor [ 98.6 3.3E-07 7.3E-12 96.7 12.4 237 108-477 258-497 (503)
232 KOG2139 WD40 repeat protein [G 98.6 2.3E-06 5E-11 87.2 16.7 110 186-354 193-303 (445)
233 COG2819 Predicted hydrolase of 98.6 3.5E-06 7.7E-11 84.8 17.9 111 750-877 128-245 (264)
234 PRK10115 protease 2; Provision 98.6 1.2E-05 2.7E-10 96.0 26.0 109 111-261 129-240 (686)
235 PF02239 Cytochrom_D1: Cytochr 98.6 9.3E-05 2E-09 81.6 30.7 185 218-491 15-204 (369)
236 KOG1274 WD40 repeat protein [G 98.5 3.8E-06 8.2E-11 95.7 19.3 165 315-530 77-253 (933)
237 PF02273 Acyl_transf_2: Acyl t 98.5 3.3E-06 7.2E-11 82.3 16.2 207 644-878 7-239 (294)
238 KOG2382 Predicted alpha/beta h 98.5 2.9E-06 6.3E-11 87.7 15.3 203 668-897 50-313 (315)
239 PF06433 Me-amine-dh_H: Methyl 98.5 5.6E-05 1.2E-09 79.1 24.8 276 105-491 32-322 (342)
240 COG4188 Predicted dienelactone 98.5 4E-07 8.7E-12 95.6 8.8 214 639-877 38-295 (365)
241 KOG1273 WD40 repeat protein [G 98.4 3.3E-05 7.1E-10 77.6 20.7 259 191-572 26-292 (405)
242 COG2272 PnbA Carboxylesterase 98.4 4.3E-07 9.2E-12 98.5 8.0 128 652-795 80-218 (491)
243 KOG0284 Polyadenylation factor 98.4 2.1E-06 4.5E-11 88.9 12.0 225 190-528 98-325 (464)
244 PF00135 COesterase: Carboxyle 98.4 4.5E-07 9.8E-12 107.4 7.9 127 652-793 109-244 (535)
245 KOG0283 WD40 repeat-containing 98.4 9.1E-06 2E-10 92.1 17.3 198 190-490 371-577 (712)
246 KOG0288 WD40 repeat protein Ti 98.4 3.4E-06 7.4E-11 87.5 12.5 126 314-476 322-452 (459)
247 KOG2139 WD40 repeat protein [G 98.4 1.4E-05 3.1E-10 81.6 16.6 156 332-530 196-366 (445)
248 KOG0771 Prolactin regulatory e 98.4 8.3E-06 1.8E-10 85.3 15.3 194 102-415 138-341 (398)
249 KOG1539 WD repeat protein [Gen 98.4 0.00032 6.9E-09 79.6 28.4 195 332-615 449-646 (910)
250 KOG0275 Conserved WD40 repeat- 98.4 4.9E-06 1.1E-10 83.2 12.4 179 315-567 286-474 (508)
251 PF08450 SGL: SMP-30/Gluconola 98.3 0.00016 3.6E-09 75.7 24.9 143 313-490 21-165 (246)
252 KOG0283 WD40 repeat-containing 98.3 2.8E-05 6.1E-10 88.3 19.6 154 324-529 402-566 (712)
253 KOG2394 WD40 protein DMR-N9 [G 98.3 1.8E-05 3.9E-10 84.9 17.0 91 332-465 291-384 (636)
254 KOG0319 WD40-repeat-containing 98.3 4.1E-05 8.9E-10 85.4 20.1 192 194-490 25-223 (775)
255 KOG2048 WD40 repeat protein [G 98.3 0.0013 2.8E-08 73.2 31.2 156 110-377 27-187 (691)
256 KOG0639 Transducin-like enhanc 98.3 9.5E-06 2.1E-10 86.0 14.4 227 108-476 465-695 (705)
257 cd00707 Pancreat_lipase_like P 98.3 4.5E-06 9.7E-11 88.3 12.2 108 670-793 36-146 (275)
258 COG1073 Hydrolases of the alph 98.3 2.8E-06 6E-11 92.0 11.1 78 817-898 218-298 (299)
259 PF07433 DUF1513: Protein of u 98.3 0.00044 9.6E-09 71.8 26.2 226 191-491 7-249 (305)
260 COG4757 Predicted alpha/beta h 98.3 5.8E-06 1.3E-10 79.8 11.5 221 642-894 8-280 (281)
261 PF06057 VirJ: Bacterial virul 98.3 1.5E-05 3.3E-10 76.2 13.8 170 697-895 14-190 (192)
262 PF08450 SGL: SMP-30/Gluconola 98.3 0.00013 2.9E-09 76.3 22.7 213 164-474 23-244 (246)
263 KOG1009 Chromatin assembly com 98.3 3.2E-05 7E-10 80.4 16.6 60 189-261 124-183 (434)
264 KOG0278 Serine/threonine kinas 98.3 1.5E-05 3.2E-10 77.4 13.2 195 189-490 101-300 (334)
265 PF06342 DUF1057: Alpha/beta h 98.3 5.5E-05 1.2E-09 76.5 17.4 129 641-793 8-136 (297)
266 COG3208 GrsT Predicted thioest 98.2 2.6E-05 5.5E-10 77.3 14.5 61 827-898 173-233 (244)
267 KOG0319 WD40-repeat-containing 98.2 0.00089 1.9E-08 75.1 27.9 363 110-621 194-581 (775)
268 KOG1009 Chromatin assembly com 98.2 0.00011 2.4E-09 76.6 19.5 110 184-353 60-187 (434)
269 KOG2106 Uncharacterized conser 98.2 0.0011 2.5E-08 71.0 27.2 277 163-528 222-510 (626)
270 KOG0643 Translation initiation 98.2 0.00032 7E-09 69.2 21.2 182 194-474 58-250 (327)
271 PF06821 Ser_hydrolase: Serine 98.2 1.5E-05 3.3E-10 77.3 11.9 99 759-877 55-154 (171)
272 KOG0277 Peroxisomal targeting 98.2 6E-05 1.3E-09 73.6 15.6 257 163-529 38-299 (311)
273 KOG1553 Predicted alpha/beta h 98.2 3.4E-06 7.3E-11 85.7 7.1 182 639-845 214-398 (517)
274 KOG1445 Tumor-specific antigen 98.2 2.8E-05 6.1E-10 84.7 14.3 98 365-490 699-799 (1012)
275 KOG0640 mRNA cleavage stimulat 98.2 5E-05 1.1E-09 76.0 14.6 119 330-487 215-335 (430)
276 COG2021 MET2 Homoserine acetyl 98.2 5E-05 1.1E-09 79.8 15.2 53 738-792 127-180 (368)
277 KOG2919 Guanine nucleotide-bin 98.1 0.00014 3E-09 73.5 17.5 115 332-487 208-327 (406)
278 KOG2564 Predicted acetyltransf 98.1 1.2E-05 2.6E-10 79.9 9.9 123 639-790 50-178 (343)
279 KOG0295 WD40 repeat-containing 98.1 3.4E-05 7.3E-10 79.1 13.2 227 164-487 131-364 (406)
280 KOG0640 mRNA cleavage stimulat 98.1 6.6E-05 1.4E-09 75.2 14.8 196 110-380 114-341 (430)
281 KOG2551 Phospholipase/carboxyh 98.1 2.1E-05 4.5E-10 76.2 11.0 122 743-899 92-222 (230)
282 KOG2919 Guanine nucleotide-bin 98.1 8.5E-05 1.8E-09 75.0 15.4 128 314-476 133-271 (406)
283 PF10340 DUF2424: Protein of u 98.1 0.00011 2.4E-09 78.7 17.0 202 653-877 107-350 (374)
284 PF06433 Me-amine-dh_H: Methyl 98.1 0.0022 4.8E-08 67.5 25.9 221 334-623 97-326 (342)
285 TIGR03230 lipo_lipase lipoprot 98.1 2.6E-05 5.7E-10 86.3 12.1 79 712-793 73-153 (442)
286 COG0596 MhpC Predicted hydrola 98.0 6.9E-05 1.5E-09 78.9 14.6 71 713-793 51-122 (282)
287 PF07433 DUF1513: Protein of u 98.0 0.0027 5.8E-08 66.1 25.2 231 165-467 30-269 (305)
288 KOG0310 Conserved WD40 repeat- 98.0 0.00056 1.2E-08 73.1 20.4 267 189-604 27-300 (487)
289 KOG0306 WD40-repeat-containing 98.0 0.00055 1.2E-08 76.8 21.0 201 189-490 374-583 (888)
290 PRK04940 hypothetical protein; 98.0 0.00016 3.5E-09 69.2 14.6 116 759-895 60-178 (180)
291 PLN02919 haloacid dehalogenase 98.0 0.0039 8.4E-08 78.4 30.6 126 335-491 686-835 (1057)
292 PLN02919 haloacid dehalogenase 98.0 0.0029 6.2E-08 79.5 29.4 212 191-491 626-890 (1057)
293 KOG0647 mRNA export protein (c 98.0 0.00036 7.7E-09 70.1 17.0 247 163-477 50-315 (347)
294 KOG0310 Conserved WD40 repeat- 98.0 0.00053 1.1E-08 73.3 19.2 221 190-528 70-298 (487)
295 KOG0316 Conserved WD40 repeat- 98.0 0.00031 6.7E-09 67.9 15.7 193 110-378 19-217 (307)
296 COG3386 Gluconolactonase [Carb 98.0 0.0047 1E-07 65.8 26.4 145 313-489 46-193 (307)
297 KOG0295 WD40 repeat-containing 98.0 0.00015 3.2E-09 74.6 14.2 100 111-261 153-253 (406)
298 KOG0288 WD40 repeat protein Ti 98.0 0.00022 4.8E-09 74.4 15.5 251 190-572 177-429 (459)
299 KOG2106 Uncharacterized conser 98.0 0.0043 9.4E-08 66.7 25.0 59 189-259 201-262 (626)
300 PF03959 FSH1: Serine hydrolas 97.9 7.7E-05 1.7E-09 75.8 11.6 92 761-878 104-203 (212)
301 KOG1523 Actin-related protein 97.9 0.00042 9E-09 70.2 16.1 105 110-261 12-118 (361)
302 KOG1524 WD40 repeat-containing 97.9 7.9E-05 1.7E-09 79.9 11.6 167 189-474 105-275 (737)
303 PF12146 Hydrolase_4: Putative 97.9 2.8E-05 6.1E-10 64.3 6.3 75 649-747 1-78 (79)
304 PF04762 IKI3: IKI3 family; I 97.9 0.017 3.7E-07 71.3 33.0 118 333-486 211-332 (928)
305 KOG1538 Uncharacterized conser 97.9 0.00051 1.1E-08 75.7 17.0 58 109-205 13-70 (1081)
306 COG3386 Gluconolactonase [Carb 97.9 0.0076 1.6E-07 64.2 25.5 205 191-490 27-244 (307)
307 KOG0278 Serine/threonine kinas 97.9 0.00029 6.4E-09 68.6 13.3 178 110-412 102-281 (334)
308 KOG0289 mRNA splicing factor [ 97.8 0.0013 2.9E-08 69.2 18.5 228 143-476 263-497 (506)
309 KOG1332 Vesicle coat complex C 97.8 0.0011 2.3E-08 64.8 16.5 231 164-490 34-289 (299)
310 PF10142 PhoPQ_related: PhoPQ- 97.8 0.00012 2.7E-09 78.8 11.5 153 740-902 149-325 (367)
311 KOG0289 mRNA splicing factor [ 97.8 0.0023 4.9E-08 67.5 19.6 166 332-568 304-470 (506)
312 TIGR01849 PHB_depoly_PhaZ poly 97.8 0.00039 8.5E-09 76.2 14.7 69 827-897 334-406 (406)
313 KOG0641 WD40 repeat protein [G 97.8 0.0035 7.7E-08 60.1 18.5 139 312-491 161-305 (350)
314 KOG2048 WD40 repeat protein [G 97.7 0.0014 3E-08 73.0 18.0 163 110-377 384-551 (691)
315 KOG0313 Microtubule binding pr 97.7 0.0052 1.1E-07 63.9 20.8 274 96-489 93-378 (423)
316 TIGR03502 lipase_Pla1_cef extr 97.7 0.00018 4E-09 84.8 11.9 93 670-780 449-576 (792)
317 KOG1524 WD40 repeat-containing 97.7 0.00091 2E-08 72.1 15.8 139 322-528 134-275 (737)
318 KOG0771 Prolactin regulatory e 97.7 0.00061 1.3E-08 71.7 14.3 73 400-490 283-357 (398)
319 KOG1538 Uncharacterized conser 97.7 0.0013 2.8E-08 72.7 17.2 57 190-261 14-71 (1081)
320 PF10647 Gmad1: Lipoprotein Lp 97.7 0.0033 7.1E-08 65.7 19.8 59 190-261 25-83 (253)
321 KOG1063 RNA polymerase II elon 97.7 0.011 2.3E-07 66.3 24.0 78 397-486 524-601 (764)
322 KOG2394 WD40 protein DMR-N9 [G 97.7 0.0094 2E-07 64.8 22.9 68 451-530 286-353 (636)
323 PF11144 DUF2920: Protein of u 97.7 0.0012 2.5E-08 71.1 15.4 136 734-871 157-332 (403)
324 KOG0641 WD40 repeat protein [G 97.6 0.0094 2E-07 57.3 19.6 111 333-487 233-349 (350)
325 PF10230 DUF2305: Uncharacteri 97.6 0.00074 1.6E-08 71.0 13.7 107 670-794 2-122 (266)
326 PF10647 Gmad1: Lipoprotein Lp 97.6 0.0018 3.9E-08 67.6 16.4 103 110-261 25-129 (253)
327 PF05677 DUF818: Chlamydia CHL 97.6 0.00099 2.1E-08 69.3 13.9 123 638-780 111-236 (365)
328 KOG3253 Predicted alpha/beta h 97.6 0.0012 2.6E-08 72.8 15.1 102 754-878 245-347 (784)
329 PRK02888 nitrous-oxide reducta 97.6 0.014 3.1E-07 66.5 23.9 213 191-490 127-352 (635)
330 COG3243 PhaC Poly(3-hydroxyalk 97.6 0.0012 2.5E-08 70.7 14.4 88 703-795 130-218 (445)
331 PF04762 IKI3: IKI3 family; I 97.6 0.08 1.7E-06 65.5 32.5 110 400-528 211-323 (928)
332 KOG1445 Tumor-specific antigen 97.6 0.0012 2.7E-08 72.4 14.6 157 331-529 627-784 (1012)
333 KOG0313 Microtubule binding pr 97.6 0.0083 1.8E-07 62.5 19.8 249 179-529 96-365 (423)
334 KOG0294 WD40 repeat-containing 97.6 0.0053 1.1E-07 62.3 17.8 215 164-491 64-285 (362)
335 KOG1007 WD repeat protein TSSC 97.6 0.0027 5.8E-08 63.5 15.5 113 190-374 125-245 (370)
336 KOG0299 U3 snoRNP-associated p 97.6 0.0098 2.1E-07 63.5 20.4 59 190-261 204-262 (479)
337 KOG0307 Vesicle coat complex C 97.6 0.00043 9.2E-09 81.6 11.5 211 185-491 61-286 (1049)
338 COG1506 DAP2 Dipeptidyl aminop 97.6 0.035 7.6E-07 66.3 28.1 162 106-354 57-238 (620)
339 KOG0268 Sof1-like rRNA process 97.5 0.00087 1.9E-08 69.0 11.9 136 313-490 209-348 (433)
340 KOG1036 Mitotic spindle checkp 97.5 0.03 6.5E-07 56.9 22.5 109 190-375 15-125 (323)
341 KOG0650 WD40 repeat nucleolar 97.5 0.0013 2.9E-08 71.9 13.8 88 313-440 545-636 (733)
342 PF11339 DUF3141: Protein of u 97.5 0.0032 6.9E-08 69.0 16.5 49 826-876 293-348 (581)
343 PF06028 DUF915: Alpha/beta hy 97.5 0.00093 2E-08 68.9 12.2 151 736-894 82-252 (255)
344 COG4947 Uncharacterized protei 97.5 0.00026 5.7E-09 64.9 6.7 118 745-877 89-216 (227)
345 COG3545 Predicted esterase of 97.5 0.0016 3.4E-08 61.1 11.6 119 758-896 58-178 (181)
346 KOG0294 WD40 repeat-containing 97.5 0.0067 1.5E-07 61.6 16.7 101 108-261 83-186 (362)
347 KOG4283 Transcription-coupled 97.5 0.029 6.4E-07 56.4 20.8 111 190-374 103-219 (397)
348 KOG1036 Mitotic spindle checkp 97.4 0.048 1E-06 55.6 22.4 90 110-253 15-104 (323)
349 COG1770 PtrB Protease II [Amin 97.4 0.06 1.3E-06 61.2 25.6 110 110-261 130-241 (682)
350 KOG2110 Uncharacterized conser 97.4 0.0022 4.7E-08 66.5 13.2 135 163-375 106-249 (391)
351 TIGR02171 Fb_sc_TIGR02171 Fibr 97.4 0.0088 1.9E-07 70.5 19.7 84 164-262 330-418 (912)
352 KOG1408 WD40 repeat protein [F 97.4 0.0075 1.6E-07 67.5 17.9 74 515-621 602-675 (1080)
353 KOG4378 Nuclear protein COP1 [ 97.4 0.011 2.5E-07 63.4 18.2 145 332-528 122-269 (673)
354 KOG0316 Conserved WD40 repeat- 97.4 0.0054 1.2E-07 59.7 14.3 200 332-622 18-218 (307)
355 KOG0264 Nucleosome remodeling 97.4 0.013 2.8E-07 62.6 18.4 229 163-487 147-404 (422)
356 KOG1539 WD repeat protein [Gen 97.4 0.0077 1.7E-07 68.9 17.4 83 432-530 555-638 (910)
357 KOG0292 Vesicle coat complex C 97.3 0.13 2.8E-06 59.7 26.0 249 110-490 11-283 (1202)
358 KOG1516 Carboxylesterase and r 97.3 0.00037 8E-09 82.5 6.4 126 652-793 97-231 (545)
359 KOG0290 Conserved WD40 repeat- 97.3 0.068 1.5E-06 53.9 20.8 232 164-487 74-318 (364)
360 PF00975 Thioesterase: Thioest 97.2 0.0064 1.4E-07 62.8 14.7 82 704-793 19-103 (229)
361 PF07676 PD40: WD40-like Beta 97.2 0.00065 1.4E-08 47.7 4.9 31 189-223 9-39 (39)
362 PF07519 Tannase: Tannase and 97.2 0.032 7E-07 63.7 21.1 86 707-793 54-149 (474)
363 KOG4378 Nuclear protein COP1 [ 97.2 0.013 2.8E-07 62.9 16.1 142 314-498 143-288 (673)
364 KOG0277 Peroxisomal targeting 97.2 0.027 5.9E-07 55.6 16.8 205 190-490 10-222 (311)
365 KOG1034 Transcriptional repres 97.2 0.018 3.9E-07 59.0 16.1 116 190-378 91-215 (385)
366 KOG1063 RNA polymerase II elon 97.2 0.003 6.6E-08 70.5 11.4 109 111-261 528-636 (764)
367 KOG4283 Transcription-coupled 97.1 0.0098 2.1E-07 59.8 13.5 155 157-377 118-279 (397)
368 PF07819 PGAP1: PGAP1-like pro 97.1 0.0082 1.8E-07 61.3 13.6 54 740-793 63-122 (225)
369 PTZ00472 serine carboxypeptida 97.1 0.0032 6.9E-08 71.7 11.1 142 649-795 60-217 (462)
370 KOG0303 Actin-binding protein 97.1 0.057 1.2E-06 56.7 18.7 123 332-491 82-205 (472)
371 PF15492 Nbas_N: Neuroblastoma 97.0 0.13 2.7E-06 52.4 20.6 36 190-234 45-80 (282)
372 PF05577 Peptidase_S28: Serine 97.0 0.003 6.6E-08 72.2 10.5 88 705-795 51-149 (434)
373 KOG0269 WD40 repeat-containing 97.0 0.0093 2E-07 67.6 13.3 181 163-440 110-295 (839)
374 KOG1963 WD40 repeat protein [G 97.0 0.17 3.7E-06 58.8 23.4 102 111-261 208-310 (792)
375 PF12048 DUF3530: Protein of u 97.0 0.073 1.6E-06 57.3 19.7 213 640-897 63-309 (310)
376 KOG0268 Sof1-like rRNA process 97.0 0.0023 4.9E-08 66.1 7.6 161 164-416 168-333 (433)
377 KOG0308 Conserved WD40 repeat- 97.0 0.011 2.4E-07 65.7 13.3 133 325-488 110-244 (735)
378 KOG1332 Vesicle coat complex C 97.0 0.094 2E-06 51.7 18.1 69 451-528 203-275 (299)
379 KOG0264 Nucleosome remodeling 96.9 0.097 2.1E-06 56.1 19.7 226 117-416 144-391 (422)
380 KOG4328 WD40 protein [Function 96.9 0.12 2.7E-06 55.4 20.2 154 332-530 235-390 (498)
381 COG3490 Uncharacterized protei 96.9 0.41 8.8E-06 48.6 22.4 106 191-350 70-180 (366)
382 PLN02733 phosphatidylcholine-s 96.9 0.0037 7.9E-08 70.1 9.3 87 703-795 112-202 (440)
383 COG3150 Predicted esterase [Ge 96.9 0.011 2.3E-07 54.8 10.3 136 735-895 41-187 (191)
384 PF05705 DUF829: Eukaryotic pr 96.9 0.03 6.4E-07 58.3 15.5 64 828-893 176-239 (240)
385 KOG0650 WD40 repeat nucleolar 96.9 0.024 5.2E-07 62.5 14.7 266 190-528 402-679 (733)
386 PF07082 DUF1350: Protein of u 96.8 0.073 1.6E-06 53.6 16.8 154 703-876 38-204 (250)
387 KOG0307 Vesicle coat complex C 96.8 0.013 2.8E-07 69.6 13.4 167 332-565 117-289 (1049)
388 KOG2110 Uncharacterized conser 96.8 0.014 3.1E-07 60.7 11.5 135 314-489 106-250 (391)
389 KOG4328 WD40 protein [Function 96.7 0.54 1.2E-05 50.7 23.1 155 332-528 280-439 (498)
390 KOG0292 Vesicle coat complex C 96.7 0.56 1.2E-05 54.7 24.7 251 190-571 11-291 (1202)
391 KOG0285 Pleiotropic regulator 96.7 0.2 4.3E-06 52.1 19.2 181 189-473 152-337 (460)
392 KOG1408 WD40 repeat protein [F 96.7 0.019 4.2E-07 64.4 12.9 117 332-488 597-714 (1080)
393 KOG0647 mRNA export protein (c 96.7 0.9 1.9E-05 46.5 24.0 113 190-376 29-147 (347)
394 PF06977 SdiA-regulated: SdiA- 96.7 0.2 4.3E-06 51.6 19.3 58 190-259 23-80 (248)
395 KOG4840 Predicted hydrolases o 96.6 0.082 1.8E-06 51.3 14.9 88 703-797 57-147 (299)
396 TIGR02171 Fb_sc_TIGR02171 Fibr 96.6 0.22 4.7E-06 59.3 21.4 128 344-504 319-456 (912)
397 KOG1963 WD40 repeat protein [G 96.6 0.79 1.7E-05 53.5 25.2 114 334-488 208-321 (792)
398 KOG0321 WD40 repeat-containing 96.6 0.15 3.2E-06 57.1 18.4 60 189-261 101-162 (720)
399 KOG1523 Actin-related protein 96.6 0.042 9E-07 56.2 13.1 220 332-620 11-239 (361)
400 PRK02888 nitrous-oxide reducta 96.5 0.15 3.2E-06 58.6 18.5 111 110-230 236-354 (635)
401 KOG0285 Pleiotropic regulator 96.4 0.67 1.4E-05 48.4 20.7 234 110-491 153-391 (460)
402 KOG0308 Conserved WD40 repeat- 96.4 0.088 1.9E-06 58.9 15.5 159 110-375 75-244 (735)
403 PF00151 Lipase: Lipase; Inte 96.4 0.0095 2.1E-07 64.5 8.2 112 669-793 70-186 (331)
404 KOG0299 U3 snoRNP-associated p 96.4 0.17 3.8E-06 54.3 16.9 22 455-476 425-446 (479)
405 PF01674 Lipase_2: Lipase (cla 96.4 0.016 3.5E-07 58.3 8.9 70 703-779 20-95 (219)
406 KOG0646 WD40 repeat protein [G 96.3 0.12 2.7E-06 55.5 15.6 142 314-490 103-248 (476)
407 KOG1920 IkappaB kinase complex 96.3 0.98 2.1E-05 54.9 24.4 166 332-546 69-277 (1265)
408 KOG0303 Actin-binding protein 96.3 0.31 6.8E-06 51.4 18.1 116 332-490 132-250 (472)
409 PF07676 PD40: WD40-like Beta 96.3 0.0067 1.4E-07 42.4 4.3 37 449-485 2-39 (39)
410 PF15492 Nbas_N: Neuroblastoma 96.3 0.84 1.8E-05 46.6 20.4 39 332-383 44-82 (282)
411 KOG0302 Ribosome Assembly prot 96.3 0.17 3.6E-06 53.1 15.6 122 332-490 258-381 (440)
412 KOG0276 Vesicle coat complex C 96.3 0.86 1.9E-05 51.1 21.7 206 163-472 35-244 (794)
413 KOG2321 WD40 repeat protein [G 96.2 0.54 1.2E-05 52.1 20.0 117 313-466 154-282 (703)
414 KOG1920 IkappaB kinase complex 96.2 0.91 2E-05 55.1 23.4 41 313-353 89-131 (1265)
415 PF03096 Ndr: Ndr family; Int 96.2 0.21 4.5E-06 51.8 16.2 221 644-895 4-277 (283)
416 KOG0290 Conserved WD40 repeat- 96.2 0.97 2.1E-05 46.0 19.8 239 190-528 46-306 (364)
417 COG3391 Uncharacterized conser 96.2 1.1 2.3E-05 50.2 23.1 159 190-440 117-282 (381)
418 KOG0302 Ribosome Assembly prot 96.1 0.1 2.2E-06 54.7 12.8 102 145-261 215-320 (440)
419 KOG0646 WD40 repeat protein [G 96.1 0.11 2.4E-06 55.9 13.5 60 189-261 82-141 (476)
420 KOG1034 Transcriptional repres 96.0 0.37 8E-06 49.7 16.2 85 163-261 115-199 (385)
421 KOG1007 WD repeat protein TSSC 96.0 0.33 7.2E-06 49.1 15.4 105 333-477 172-280 (370)
422 PF00450 Peptidase_S10: Serine 95.9 0.033 7.1E-07 63.5 9.7 150 641-795 15-182 (415)
423 KOG2183 Prolylcarboxypeptidase 95.9 0.042 9.1E-07 58.5 9.3 56 736-791 144-199 (492)
424 COG4814 Uncharacterized protei 95.9 0.093 2E-06 52.4 11.1 146 740-896 119-286 (288)
425 COG3391 Uncharacterized conser 95.8 1.1 2.3E-05 50.2 21.2 206 191-491 76-285 (381)
426 COG2319 FOG: WD40 repeat [Gene 95.8 1.8 3.8E-05 48.5 23.8 194 191-490 112-315 (466)
427 KOG2111 Uncharacterized conser 95.8 0.92 2E-05 46.8 18.1 103 199-375 147-257 (346)
428 KOG0281 Beta-TrCP (transducin 95.7 0.092 2E-06 54.1 10.9 213 155-487 209-428 (499)
429 PF08386 Abhydrolase_4: TAP-li 95.6 0.024 5.1E-07 49.9 5.6 60 830-896 34-93 (103)
430 KOG2041 WD40 repeat protein [G 95.5 1.7 3.8E-05 49.5 20.4 61 189-261 72-133 (1189)
431 PF11187 DUF2974: Protein of u 95.5 0.019 4.1E-07 58.3 5.2 54 740-793 65-122 (224)
432 COG3490 Uncharacterized protei 95.5 1.8 4E-05 44.1 18.5 166 453-658 65-246 (366)
433 KOG4389 Acetylcholinesterase/B 95.5 0.021 4.6E-07 62.0 5.5 125 652-795 121-256 (601)
434 KOG3967 Uncharacterized conser 95.3 0.094 2E-06 50.5 8.7 76 705-782 137-213 (297)
435 KOG0267 Microtubule severing p 95.2 0.063 1.4E-06 60.8 8.3 81 163-261 92-172 (825)
436 KOG0300 WD40 repeat-containing 95.1 1.1 2.5E-05 45.8 16.0 39 332-383 273-312 (481)
437 PRK10252 entF enterobactin syn 95.1 0.18 3.8E-06 66.9 13.8 75 710-792 1092-1169(1296)
438 PF13360 PQQ_2: PQQ-like domai 95.1 4.6 9.9E-05 41.6 21.9 52 314-378 86-144 (238)
439 COG3204 Uncharacterized protei 95.1 3.6 7.9E-05 42.5 19.4 64 180-259 79-144 (316)
440 KOG4532 WD40-like repeat conta 95.0 0.97 2.1E-05 45.5 14.9 106 111-261 161-270 (344)
441 KOG4547 WD40 repeat-containing 95.0 1.9 4.2E-05 48.2 18.7 103 215-384 76-183 (541)
442 COG3204 Uncharacterized protei 95.0 3 6.6E-05 43.0 18.7 117 332-488 86-211 (316)
443 KOG0269 WD40 repeat-containing 94.9 0.69 1.5E-05 53.2 15.3 99 332-471 177-279 (839)
444 COG3946 VirJ Type IV secretory 94.8 0.12 2.5E-06 55.3 8.6 172 697-895 272-447 (456)
445 PF06977 SdiA-regulated: SdiA- 94.8 1.7 3.7E-05 44.9 17.0 123 326-488 15-148 (248)
446 KOG2182 Hydrolytic enzymes of 94.7 0.28 6.1E-06 54.1 11.5 131 648-795 67-208 (514)
447 PF05990 DUF900: Alpha/beta hy 94.7 0.14 3.1E-06 52.6 9.0 83 739-843 75-166 (233)
448 KOG2931 Differentiation-relate 94.7 1.9 4.1E-05 44.5 16.4 131 639-794 22-157 (326)
449 PF13360 PQQ_2: PQQ-like domai 94.6 6.2 0.00013 40.6 22.8 52 312-377 44-97 (238)
450 KOG0267 Microtubule severing p 94.5 0.063 1.4E-06 60.7 6.0 114 314-467 92-208 (825)
451 COG3319 Thioesterase domains o 94.5 0.086 1.9E-06 54.4 6.6 72 713-792 27-101 (257)
452 KOG2100 Dipeptidyl aminopeptid 94.4 9.5 0.00021 46.6 24.6 65 552-627 366-432 (755)
453 PF04053 Coatomer_WDAD: Coatom 94.3 1.3 2.8E-05 50.1 16.0 36 315-351 127-164 (443)
454 TIGR03712 acc_sec_asp2 accesso 94.3 1.7 3.7E-05 48.2 16.1 56 734-795 336-391 (511)
455 KOG2565 Predicted hydrolases o 94.3 0.22 4.7E-06 52.5 8.9 117 648-787 132-257 (469)
456 KOG4388 Hormone-sensitive lipa 93.9 0.053 1.2E-06 59.9 3.9 89 670-779 396-489 (880)
457 TIGR03300 assembly_YfgL outer 93.6 15 0.00032 41.1 32.2 55 553-623 290-344 (377)
458 KOG2041 WD40 repeat protein [G 93.6 0.32 6.8E-06 55.1 9.0 31 323-353 250-280 (1189)
459 KOG3975 Uncharacterized conser 93.5 1.9 4.2E-05 43.2 13.4 44 830-878 242-285 (301)
460 KOG1551 Uncharacterized conser 93.4 0.39 8.5E-06 48.1 8.6 66 825-897 296-366 (371)
461 KOG2111 Uncharacterized conser 93.3 4.4 9.5E-05 42.1 15.9 86 432-528 158-245 (346)
462 COG4782 Uncharacterized protei 93.3 0.36 7.9E-06 51.2 8.6 55 737-793 171-233 (377)
463 KOG3881 Uncharacterized conser 93.2 3.9 8.4E-05 43.6 15.8 98 430-562 223-322 (412)
464 PRK13614 lipoprotein LpqB; Pro 93.2 2.6 5.6E-05 49.0 16.2 62 188-261 382-451 (573)
465 KOG2321 WD40 repeat protein [G 93.1 15 0.00032 41.4 20.5 41 457-503 230-270 (703)
466 PF13449 Phytase-like: Esteras 93.1 16 0.00034 39.9 22.5 149 333-490 86-252 (326)
467 PRK13613 lipoprotein LpqB; Pro 93.0 6.4 0.00014 46.4 19.3 57 190-261 364-425 (599)
468 PLN02209 serine carboxypeptida 93.0 0.67 1.5E-05 52.3 10.9 151 640-795 42-213 (437)
469 PF11768 DUF3312: Protein of u 92.9 8.8 0.00019 43.5 19.0 141 314-490 184-330 (545)
470 KOG0270 WD40 repeat-containing 92.8 14 0.00031 40.1 19.4 59 191-261 246-304 (463)
471 KOG1912 WD40 repeat protein [G 92.8 12 0.00026 43.7 19.8 67 403-486 235-303 (1062)
472 PF04053 Coatomer_WDAD: Coatom 92.8 2.6 5.7E-05 47.7 15.2 45 343-416 117-162 (443)
473 PF01764 Lipase_3: Lipase (cla 92.6 0.28 6.1E-06 45.9 6.3 40 738-779 45-84 (140)
474 PRK13613 lipoprotein LpqB; Pro 92.4 3.1 6.6E-05 49.0 15.6 107 110-261 364-472 (599)
475 cd00741 Lipase Lipase. Lipase 92.4 0.4 8.6E-06 45.8 7.1 43 738-782 9-51 (153)
476 PF05057 DUF676: Putative seri 92.3 0.14 3.1E-06 52.0 4.2 21 758-778 77-97 (217)
477 COG2319 FOG: WD40 repeat [Gene 92.3 21 0.00046 39.5 24.4 161 315-527 135-302 (466)
478 PF05694 SBP56: 56kDa selenium 92.2 3.2 7E-05 45.6 14.0 67 458-528 314-392 (461)
479 PRK13615 lipoprotein LpqB; Pro 92.1 3.9 8.5E-05 47.4 15.6 62 189-261 373-434 (557)
480 TIGR02604 Piru_Ver_Nterm putat 92.0 4.2 9E-05 45.3 15.6 130 315-470 48-198 (367)
481 PF13449 Phytase-like: Esteras 92.0 17 0.00036 39.7 20.0 67 192-261 88-164 (326)
482 KOG3914 WD repeat protein WDR4 91.9 2.3 4.9E-05 45.5 12.2 39 218-261 131-169 (390)
483 KOG0281 Beta-TrCP (transducin 91.8 2.7 5.9E-05 43.7 12.4 116 315-477 341-469 (499)
484 PRK13614 lipoprotein LpqB; Pro 91.8 9.9 0.00021 44.4 18.5 148 315-491 366-520 (573)
485 KOG3914 WD repeat protein WDR4 91.8 1.9 4.1E-05 46.0 11.5 40 446-489 142-181 (390)
486 TIGR02604 Piru_Ver_Nterm putat 91.7 6.9 0.00015 43.5 17.0 33 314-346 164-198 (367)
487 PLN03016 sinapoylglucose-malat 91.6 0.74 1.6E-05 52.0 9.1 150 641-795 41-211 (433)
488 PF11768 DUF3312: Protein of u 91.5 5.8 0.00013 44.9 15.5 142 164-374 185-329 (545)
489 KOG1282 Serine carboxypeptidas 91.4 1.5 3.3E-05 49.2 11.1 150 641-795 48-214 (454)
490 KOG0270 WD40 repeat-containing 91.4 20 0.00043 39.2 18.5 138 314-491 266-408 (463)
491 KOG0321 WD40 repeat-containing 91.2 7 0.00015 44.4 15.5 117 333-487 273-391 (720)
492 smart00824 PKS_TE Thioesterase 90.8 2.1 4.4E-05 43.0 10.9 34 758-791 63-99 (212)
493 PRK13615 lipoprotein LpqB; Pro 90.8 18 0.00039 42.1 19.2 134 322-491 363-504 (557)
494 PF03088 Str_synth: Strictosid 90.5 0.76 1.6E-05 38.7 5.8 40 312-351 35-76 (89)
495 COG4287 PqaA PhoPQ-activated p 90.4 0.24 5.2E-06 51.9 3.4 133 740-878 214-372 (507)
496 KOG0300 WD40 repeat-containing 90.1 7.9 0.00017 39.9 13.5 29 109-137 191-219 (481)
497 PF07995 GSDH: Glucose / Sorbo 90.0 7.2 0.00016 42.6 14.8 80 402-487 117-212 (331)
498 PF02450 LCAT: Lecithin:choles 89.9 0.63 1.4E-05 52.1 6.6 83 703-795 69-161 (389)
499 KOG3724 Negative regulator of 89.4 1.6 3.4E-05 51.0 9.0 45 736-780 152-203 (973)
500 PLN02454 triacylglycerol lipas 89.3 0.75 1.6E-05 50.6 6.2 42 738-779 207-248 (414)
No 1
>COG1506 DAP2 Dipeptidyl aminopeptidases/acylaminoacyl-peptidases [Amino acid transport and metabolism]
Probab=100.00 E-value=3.8e-44 Score=420.33 Aligned_cols=600 Identities=18% Similarity=0.236 Sum_probs=389.3
Q ss_pred HHHhhcCCCCCCceecCCCCEEEEEecCCCCCccccccccceeceEEecCCCCCCcceeeeeceEEEEccCCCCCCceee
Q 002209 102 IREIVDAPPLPALSFSPQRDKILFLKRRALPPLEELARPEEKLAGLRIDGKCNTRSRMSFYTGIGIHQLFPDGKLGQEIE 181 (953)
Q Consensus 102 ~~~~~~~~~~~~~~~SPDG~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~i~~~~~~g~~~~~~~ 181 (953)
..++.....+..+.++|+|+.++|.... ++....... +.+|+.+.. .
T Consensus 6 ~~~~~~~~~~~~~~~~~~~~~~~~i~~~-------------------~~~~~~~~~-----~~~~~~d~~------~--- 52 (620)
T COG1506 6 AEDLLALARVSDPRVSPPGGRLAYILTG-------------------LDFLKPLYK-----SSLWVSDGK------T--- 52 (620)
T ss_pred HHHHHhhhcccCcccCCCCceeEEeecc-------------------ccccccccc-----cceEEEecc------c---
Confidence 3556666678899999999999999874 222222222 367875531 1
Q ss_pred eecCCCCCcccceEeccCCCeEEEEEeeccccCCCCcceEEEEECCCCceeecccCCCccccccccceEEecCCeEEEEE
Q 002209 182 IQGFPDGAKLNFVTWSQDGKHLAFSIRIDAEDSSSSKLRVWVADVDTGKARPLFQSPDIYLNAIFDNFVWVNNSTLLVCT 261 (953)
Q Consensus 182 l~~~~~~~~~~~~~wSPDG~~laf~~~~~~~~~~~~~~~l~~~d~~~g~~~~lt~~~~~~~~~~~~~~~wspDg~~l~~~ 261 (953)
+...+.+..+..+.|||||+.++|.... +....++|+++.. | .++..... +....|+|+|..+++.
T Consensus 53 ~~~~~~~~~~~~~~~spdg~~~~~~~~~-----~~~~~~l~l~~~~-g---~~~~~~~~-----v~~~~~~~~g~~~~~~ 118 (620)
T COG1506 53 VRLLTFGGGVSELRWSPDGSVLAFVSTD-----GGRVAQLYLVDVG-G---LITKTAFG-----VSDARWSPDGDRIAFL 118 (620)
T ss_pred ccccccCCcccccccCCCCCEEEEEecc-----CCCcceEEEEecC-C---ceeeeecc-----cccceeCCCCCeEEEE
Confidence 1113345578999999999999997731 3336899999987 4 22221221 5688899999999984
Q ss_pred ecCCCCCCCCCCCCCCCCceeecCCCccccchhhhhhcCCcchhhhhhhhccceEEEEEcCCceeEeCCC-CcccccccC
Q 002209 262 IPLLRGDPPKKPLVPLGPKMQSNEKRDIIQVRTFQDLLKDEYDEDLFDYYATTQLVLVSLDGTVKEIGPP-AVYTSLDPS 340 (953)
Q Consensus 262 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~l~~~~~~g~~~~l~~~-~~~~~~~~S 340 (953)
........... .......+..+.. ..+ ....++++++..+....+... ..+..+.+.
T Consensus 119 ~~~~~~~~~~~---------------~~~~~~~~~~~~~-~~g------~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~ 176 (620)
T COG1506 119 TAEGASKRDGG---------------DHLFVDRLPVWFD-GRG------GERSDLYVVDIESKLIKLGLGNLDVVSFATD 176 (620)
T ss_pred ecccccccCCc---------------eeeeecccceeec-CCC------CcccceEEEccCcccccccCCCCceeeeeeC
Confidence 22211110000 0000000000000 000 134678888884344444444 666777788
Q ss_pred CCCcEEEEEEecCCccccccCCCCCcceEEEeccCceEEEeccCCCcccCCccccccccCccceeeccCCCCceEEEEec
Q 002209 341 PDEKYILISSIHRPYSFIVPCGRFPRQVGVWTTDGIFVRELCDLPLAEDIPIAFNSVRKGMRSINWRSDKPSTLYWAETQ 420 (953)
Q Consensus 341 pDG~~l~~~~~~~~~~~~~~~~~~~~~i~~~d~~g~~~~~l~~~~~~~~~p~~~~~~~~~~~~~~wspDg~~i~~~~~~~ 420 (953)
+|++.++........ ..+..+..++....+.+..++..+. +...+.|.+||+.+++.....
T Consensus 177 ~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~-------------~~~~~~~~~~gk~~~~~~~~~ 237 (620)
T COG1506 177 GDGRLVASIRLDDDA------DPWVTNLYVLIEGNGELESLTPGEG-------------SISKLAFDADGKSIALLGTES 237 (620)
T ss_pred CCCceeEEeeecccc------CCceEeeEEEecCCCceEEEcCCCc-------------eeeeeeeCCCCCeeEEeccCC
Confidence 888888777654320 1112233344333444444444321 234678999999877773222
Q ss_pred cCCCcccccccCCeEEEEecCCCCCCCceEEeecccccCCeeeccCCceEEEEEecccCceEEEEEcCCCCCCCcEEeec
Q 002209 421 DGGDAKVEVTPRDIIYTQQAEPVQGEGPEILHKLDLRYGGISWCDDSLALVYESWYKTRRTRTWVISPGSKDVAPRILFD 500 (953)
Q Consensus 421 ~~~~~~~~~~~~~~l~~~d~~~~~g~~~~~l~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~l~~~d~~~~~~~~~~~~~ 500 (953)
+. .. .....+++++. ..++... ..+..+ +...
T Consensus 238 ~~-~~----~~~~~~~~~~~---~~~~~d~-----------~~~~~~-------------------~~~~---------- 269 (620)
T COG1506 238 DR-GL----AEGDFILLLDG---ELGEVDG-----------DLSSGD-------------------DTRG---------- 269 (620)
T ss_pred cc-Cc----cccceEEEEec---cccccce-----------eeccCC-------------------cccC----------
Confidence 11 00 11122222220 0000000 000000 0000
Q ss_pred CCCccccCCCCCCCeEeccCCCEEEEEeeeccCCCcEEEEecCCCCCCCCCCeEEEEECCCCceEEEeccCcccceeeeE
Q 002209 501 RSSEDVYSDPGSPMMRRTSTGTYVIAKIKKENDEGTYILLNGNGATPEGNIPFLDLFDINTGSKERIWESDKEKYYETTV 580 (953)
Q Consensus 501 ~~~~~~~~~~~~p~~~~SpDG~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~d~~~~~~~~l~~~~~~~~~~~~~ 580 (953)
. .. +...-++..++|...+. . ....++..+...+. ..+...+..
T Consensus 270 -~-~~---------~~~~~~~~~~~~~~~~~--~---------------g~~~l~~~~~~~~~-~~~~~~~~~------- 313 (620)
T COG1506 270 -A-WA---------VEGGLDGDGLLFIATDG--G---------------GSSPLFRVDDLGGG-VEGLSGDDG------- 313 (620)
T ss_pred -c-HH---------hccccCCCcEEEEEecC--C---------------CceEEEEEeccCCc-eeeecCCCc-------
Confidence 0 00 01112334444444211 0 01112222222222 222222211
Q ss_pred eeccCCccccccccCCEEEEEEecCCCCceEEEEECCCCCeeEEecCC-CCCCCcCCCceEEEEEEcCCCcEEEEEEEcC
Q 002209 581 ALMSDQTEGDLYLNQLKILTSKESKTENTQYYIQSWPDKKSCQITDFP-HPYPQLASLQKELIKYQRKDGVQLSATLYLP 659 (953)
Q Consensus 581 ~~~~~~~~~~~s~dg~~l~~~~~~~~~p~~l~~~~~~~g~~~~Lt~~~-~~~~~~~~~~~~~~~~~~~dg~~~~~~l~~P 659 (953)
.-..|+.+++.+++..+++..|+++|+++. ++..+++..+ ..+......++|.+++++.||.++++++++|
T Consensus 314 ------~v~~f~~~~~~~~~~~s~~~~p~~i~~~~~--~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~dG~~i~~~l~~P 385 (620)
T COG1506 314 ------GVPGFDVDGRKLALAYSSPTEPPEIYLYDR--GEEAKLTSSNNSGLKKVKLAEPEPVTYKSNDGETIHGWLYKP 385 (620)
T ss_pred ------eEEEEeeCCCEEEEEecCCCCccceEEEcC--CCceEEeecccccccccccCCceEEEEEcCCCCEEEEEEecC
Confidence 112456688999999999999999999986 4445555443 3445667778999999999999999999999
Q ss_pred CCCCCCCCCCccEEEEeCCCCCcCcCCCCcccCCCCCCCCccchHHHHHHHcCcEEEEcCCCCCCCCCChhhh---hhhH
Q 002209 660 PGYDPSKDGPLPCLFWSYPGEFKSKDAAGQVRGSPNEFPRIGSTSVLLWLARGFAILGGPTTPIIGEGDEEAN---DRFV 736 (953)
Q Consensus 660 ~~~~~~~~~~~P~vv~~hGg~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~G~~V~~~~~~~~~G~G~~~~~---~~~~ 736 (953)
+++++.++ +|+||++||||.... . .. .....+.|+.+||+|+.++++|+.|+|+++.. ..++
T Consensus 386 ~~~~~~k~--yP~i~~~hGGP~~~~------~---~~----~~~~~q~~~~~G~~V~~~n~RGS~GyG~~F~~~~~~~~g 450 (620)
T COG1506 386 PGFDPRKK--YPLIVYIHGGPSAQV------G---YS----FNPEIQVLASAGYAVLAPNYRGSTGYGREFADAIRGDWG 450 (620)
T ss_pred CCCCCCCC--CCEEEEeCCCCcccc------c---cc----cchhhHHHhcCCeEEEEeCCCCCCccHHHHHHhhhhccC
Confidence 99888775 999999999984321 1 11 12456789999999999999999999999765 3567
Q ss_pred HHHHHHHHHHHHHHHHcCCCCCCcEEEEEeChHHHHHHHHHHhCCCcccEEEEcccCCCCCCCCcCcccc---------c
Q 002209 737 EQLVACAEAAVEEVVRRGVAHPSKIAVGGHSYGAFMTANLLAHAPHLFCCGIARSGAYNRTLTPFGFQNE---------D 807 (953)
Q Consensus 737 ~~~~~D~~~~~~~l~~~~~~d~~~i~l~G~S~GG~~a~~~a~~~p~~~~a~v~~~~~~d~~~~~~~~~~~---------~ 807 (953)
..+++|++++++++.+.+.+|++|++|+|+||||+|+++++++.| +|+|+++..+.+++..+...+... .
T Consensus 451 ~~~~~D~~~~~~~l~~~~~~d~~ri~i~G~SyGGymtl~~~~~~~-~f~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 529 (620)
T COG1506 451 GVDLEDLIAAVDALVKLPLVDPERIGITGGSYGGYMTLLAATKTP-RFKAAVAVAGGVDWLLYFGESTEGLRFDPEENGG 529 (620)
T ss_pred CccHHHHHHHHHHHHhCCCcChHHeEEeccChHHHHHHHHHhcCc-hhheEEeccCcchhhhhccccchhhcCCHHHhCC
Confidence 789999999999999999999999999999999999999999997 899999999887765443322211 1
Q ss_pred chhhhhHHHHHhcCcccccCCCCCcEEEEEeCCCCCCCCchHHHHHHHHHHHhCCCcEEEEEeCCCCccCCCcccHHHHH
Q 002209 808 RTLWEATSTYVEMSPFMSANKLKKPILLVHGEEDNNSGTLTMQSDRFFNALKGHGALCRLVILPFESHGYAARESIMHVL 887 (953)
Q Consensus 808 ~~~~~~~~~~~~~sp~~~~~~i~~P~Li~~G~~D~~v~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~H~~~~~~~~~~~~ 887 (953)
...+ +.+.|.+.||+.++.++++|+|||||++|.+|| ++|+++|+++|+.+|+++++++||+++|++...++....+
T Consensus 530 ~~~~-~~~~~~~~sp~~~~~~i~~P~LliHG~~D~~v~--~~q~~~~~~aL~~~g~~~~~~~~p~e~H~~~~~~~~~~~~ 606 (620)
T COG1506 530 GPPE-DREKYEDRSPIFYADNIKTPLLLIHGEEDDRVP--IEQAEQLVDALKRKGKPVELVVFPDEGHGFSRPENRVKVL 606 (620)
T ss_pred Cccc-ChHHHHhcChhhhhcccCCCEEEEeecCCccCC--hHHHHHHHHHHHHcCceEEEEEeCCCCcCCCCchhHHHHH
Confidence 1122 677899999999999999999999999999999 9999999999999999999999999999998888889999
Q ss_pred HHHHHHHHHhccC
Q 002209 888 WETDRWLQKYCVS 900 (953)
Q Consensus 888 ~~i~~fl~~~l~~ 900 (953)
+++++||+++++.
T Consensus 607 ~~~~~~~~~~~~~ 619 (620)
T COG1506 607 KEILDWFKRHLKQ 619 (620)
T ss_pred HHHHHHHHHHhcC
Confidence 9999999999863
No 2
>PRK10115 protease 2; Provisional
Probab=100.00 E-value=4.6e-40 Score=387.09 Aligned_cols=322 Identities=18% Similarity=0.136 Sum_probs=243.5
Q ss_pred CCeEEEEECCCCceEEEeccCcccceeeeEeeccCCccccccccCCEEEEEEecCCCCceEEEEECCCCCeeEEecCCCC
Q 002209 551 IPFLDLFDINTGSKERIWESDKEKYYETTVALMSDQTEGDLYLNQLKILTSKESKTENTQYYIQSWPDKKSCQITDFPHP 630 (953)
Q Consensus 551 ~~~L~~~d~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~p~~l~~~~~~~g~~~~Lt~~~~~ 630 (953)
...|+++|+.+++...|.-.... + ...+ ..+.++++..+++..++...|.++|.+++.+++.+.|+..+.+
T Consensus 337 ~~~l~~~~~~~~~~~~l~~~~~~-~----~~~~----~~~~~~~~~~~~~~~ss~~~P~~~y~~d~~~~~~~~l~~~~~~ 407 (686)
T PRK10115 337 LTSLRQINRKTREVIGIAFDDPA-Y----VTWI----AYNPEPETSRLRYGYSSMTTPDTLFELDMDTGERRVLKQTEVP 407 (686)
T ss_pred EEEEEEEcCCCCceEEecCCCCc-e----Eeee----cccCCCCCceEEEEEecCCCCCEEEEEECCCCcEEEEEecCCC
Confidence 45688899877777666522211 0 1110 0122356778999999999999999999999988888876543
Q ss_pred CCCcCCCceEEEEEEcCCCcEEEEEEEcCCCCCCCCCCCccEEEEeCCCCCcCcCCCCcccCCCCCCCCccchHHHHHHH
Q 002209 631 YPQLASLQKELIKYQRKDGVQLSATLYLPPGYDPSKDGPLPCLFWSYPGEFKSKDAAGQVRGSPNEFPRIGSTSVLLWLA 710 (953)
Q Consensus 631 ~~~~~~~~~~~~~~~~~dg~~~~~~l~~P~~~~~~~~~~~P~vv~~hGg~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~ 710 (953)
......+.++.+++++.||.+|+++++.|+.... .++.|+||++|||+.....+ .| ....+.|++
T Consensus 408 ~~~~~~~~~e~v~~~s~DG~~Ip~~l~~~~~~~~--~~~~P~ll~~hGg~~~~~~p---------~f----~~~~~~l~~ 472 (686)
T PRK10115 408 GFDAANYRSEHLWITARDGVEVPVSLVYHRKHFR--KGHNPLLVYGYGSYGASIDA---------DF----SFSRLSLLD 472 (686)
T ss_pred CcCccccEEEEEEEECCCCCEEEEEEEEECCCCC--CCCCCEEEEEECCCCCCCCC---------Cc----cHHHHHHHH
Confidence 2222355889999999999999996666543222 23479999999997554321 12 233568999
Q ss_pred cCcEEEEcCCCCCCCCCChhhhh---hhHHHHHHHHHHHHHHHHHcCCCCCCcEEEEEeChHHHHHHHHHHhCCCcccEE
Q 002209 711 RGFAILGGPTTPIIGEGDEEAND---RFVEQLVACAEAAVEEVVRRGVAHPSKIAVGGHSYGAFMTANLLAHAPHLFCCG 787 (953)
Q Consensus 711 ~G~~V~~~~~~~~~G~G~~~~~~---~~~~~~~~D~~~~~~~l~~~~~~d~~~i~l~G~S~GG~~a~~~a~~~p~~~~a~ 787 (953)
+||+|+.++.+|+.|+|+.+... ......++|+++++++|++++++|++|++|+|.|+||+|+.+++.++|++|+|+
T Consensus 473 rG~~v~~~n~RGs~g~G~~w~~~g~~~~k~~~~~D~~a~~~~Lv~~g~~d~~rl~i~G~S~GG~l~~~~~~~~Pdlf~A~ 552 (686)
T PRK10115 473 RGFVYAIVHVRGGGELGQQWYEDGKFLKKKNTFNDYLDACDALLKLGYGSPSLCYGMGGSAGGMLMGVAINQRPELFHGV 552 (686)
T ss_pred CCcEEEEEEcCCCCccCHHHHHhhhhhcCCCcHHHHHHHHHHHHHcCCCChHHeEEEEECHHHHHHHHHHhcChhheeEE
Confidence 99999999999999999987653 223367999999999999999999999999999999999999999999999999
Q ss_pred EEcccCCCCCCC------CcC--cccccchhhhh--HHHHHhcCcccccCCCCCc-EEEEEeCCCCCCCCchHHHHHHHH
Q 002209 788 IARSGAYNRTLT------PFG--FQNEDRTLWEA--TSTYVEMSPFMSANKLKKP-ILLVHGEEDNNSGTLTMQSDRFFN 856 (953)
Q Consensus 788 v~~~~~~d~~~~------~~~--~~~~~~~~~~~--~~~~~~~sp~~~~~~i~~P-~Li~~G~~D~~v~~~~~~~~~~~~ 856 (953)
|+.+|++|+... +.. ...+.+.+++. .+.+.++||+.++++++.| +||+||.+|.+|| +.++.+++.
T Consensus 553 v~~vp~~D~~~~~~~~~~p~~~~~~~e~G~p~~~~~~~~l~~~SP~~~v~~~~~P~lLi~~g~~D~RV~--~~~~~k~~a 630 (686)
T PRK10115 553 IAQVPFVDVVTTMLDESIPLTTGEFEEWGNPQDPQYYEYMKSYSPYDNVTAQAYPHLLVTTGLHDSQVQ--YWEPAKWVA 630 (686)
T ss_pred EecCCchhHhhhcccCCCCCChhHHHHhCCCCCHHHHHHHHHcCchhccCccCCCceeEEecCCCCCcC--chHHHHHHH
Confidence 999999996422 111 11223444432 3445679999999999999 6778999999999 999999999
Q ss_pred HHHhCCCcEEEEEe---CCCCccCCCcccHH---HHHHHHHHHHHHhccC
Q 002209 857 ALKGHGALCRLVIL---PFESHGYAARESIM---HVLWETDRWLQKYCVS 900 (953)
Q Consensus 857 ~l~~~g~~~~~~~~---~~~~H~~~~~~~~~---~~~~~i~~fl~~~l~~ 900 (953)
+|++.+.+++++++ +++||+. ..+.. ......+.|+-..+..
T Consensus 631 ~Lr~~~~~~~~vl~~~~~~~GHg~--~~~r~~~~~~~A~~~aFl~~~~~~ 678 (686)
T PRK10115 631 KLRELKTDDHLLLLCTDMDSGHGG--KSGRFKSYEGVAMEYAFLIALAQG 678 (686)
T ss_pred HHHhcCCCCceEEEEecCCCCCCC--CcCHHHHHHHHHHHHHHHHHHhCC
Confidence 99999999888888 9999984 23333 3334567888777643
No 3
>KOG2281 consensus Dipeptidyl aminopeptidases/acylaminoacyl-peptidases [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=3e-32 Score=289.96 Aligned_cols=350 Identities=20% Similarity=0.234 Sum_probs=272.3
Q ss_pred CCCEEEEEeee--ccCCCcEEEEecCCCCCCCCCCeEEEEECC-CCceEEEeccCcccceeeeEeeccCCccccccccCC
Q 002209 520 TGTYVIAKIKK--ENDEGTYILLNGNGATPEGNIPFLDLFDIN-TGSKERIWESDKEKYYETTVALMSDQTEGDLYLNQL 596 (953)
Q Consensus 520 DG~~l~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~L~~~d~~-~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~s~dg~ 596 (953)
.|+|-+-...+ .|.....||+.++.++|-.. +||+.... .|+..+||...-. ....++-+=+
T Consensus 498 SgeweVl~r~Gi~VdE~~~LVYf~gt~d~PlE~--hLyvvsye~~g~~~rlt~~g~s-------------h~~~l~~~~d 562 (867)
T KOG2281|consen 498 SGEWEVLARHGIWVDEVRKLVYFVGTKDTPLEH--HLYVVSYENPGEIARLTEPGYS-------------HSCELDQQCD 562 (867)
T ss_pred ccceeehhhcCeeecccceEEEEEccCCCCcee--eEEEEEEecCCceeeccCCCcc-------------cchhhhhhhh
Confidence 45565555444 56677888899998887554 79999987 9999999886632 1122344444
Q ss_pred EEEEEEecCCCCceEEEEECCCCCeeEEec----CC----CCCCCcCCCceEEEEEEcCCCcEEEEEEEcCCCCCCCCCC
Q 002209 597 KILTSKESKTENTQYYIQSWPDKKSCQITD----FP----HPYPQLASLQKELIKYQRKDGVQLSATLYLPPGYDPSKDG 668 (953)
Q Consensus 597 ~l~~~~~~~~~p~~l~~~~~~~g~~~~Lt~----~~----~~~~~~~~~~~~~~~~~~~dg~~~~~~l~~P~~~~~~~~~ 668 (953)
.++...++...|+.+.++.+.+++...+-. .+ ...++-+..+.|.|.|++..|..++|.+|+|.++++++|
T Consensus 563 ~fv~~~~sv~sP~cv~~y~ls~~~~~~l~~q~~~~~~l~~~~~~~Pdy~p~eif~fqs~tg~~lYgmiyKPhn~~pgkk- 641 (867)
T KOG2281|consen 563 HFVSYYSSVGSPPCVSLYSLSWPENDPLPKQVSFWAILVSGAPPPPDYVPPEIFSFQSKTGLTLYGMIYKPHNFQPGKK- 641 (867)
T ss_pred hHhhhhhcCCCCceEEEEeccCCccCcccchhhHHHHHHhcCCCCCccCChhheeeecCCCcEEEEEEEccccCCCCCC-
Confidence 567777777788877766665544322211 00 011222333458899999899999999999999999986
Q ss_pred CccEEEEeCCCCCcCcCCCCcccCCCCCCCCccchHHHHHHHcCcEEEEcCCCCCCCCCChhhh---hhhHHHHHHHHHH
Q 002209 669 PLPCLFWSYPGEFKSKDAAGQVRGSPNEFPRIGSTSVLLWLARGFAILGGPTTPIIGEGDEEAN---DRFVEQLVACAEA 745 (953)
Q Consensus 669 ~~P~vv~~hGg~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~G~~V~~~~~~~~~G~G~~~~~---~~~~~~~~~D~~~ 745 (953)
+|+|+++||||.. |+.. |.|.+........||++||+|+..|.+|+.-.|..+.. .+.+.-+++|...
T Consensus 642 -Yptvl~VYGGP~V------QlVn--nsfkgi~ylR~~~LaslGy~Vv~IDnRGS~hRGlkFE~~ik~kmGqVE~eDQVe 712 (867)
T KOG2281|consen 642 -YPTVLNVYGGPGV------QLVN--NSFKGIQYLRFCRLASLGYVVVFIDNRGSAHRGLKFESHIKKKMGQVEVEDQVE 712 (867)
T ss_pred -CceEEEEcCCCce------EEee--ccccceehhhhhhhhhcceEEEEEcCCCccccchhhHHHHhhccCeeeehhhHH
Confidence 9999999999854 4443 56666555556789999999999888888777777542 3456677999999
Q ss_pred HHHHHHHc-CCCCCCcEEEEEeChHHHHHHHHHHhCCCcccEEEEcccCCCCCCCCcCcccc-cchhhhhHHHHHhcCcc
Q 002209 746 AVEEVVRR-GVAHPSKIAVGGHSYGAFMTANLLAHAPHLFCCGIARSGAYNRTLTPFGFQNE-DRTLWEATSTYVEMSPF 823 (953)
Q Consensus 746 ~~~~l~~~-~~~d~~~i~l~G~S~GG~~a~~~a~~~p~~~~a~v~~~~~~d~~~~~~~~~~~-~~~~~~~~~~~~~~sp~ 823 (953)
.+++|.++ +++|.+||+|.||||||+|++.+++++|+.|+++|+.+|+.+|..++-+|... .+.+..+...|..-|-.
T Consensus 713 glq~Laeq~gfidmdrV~vhGWSYGGYLSlm~L~~~P~IfrvAIAGapVT~W~~YDTgYTERYMg~P~~nE~gY~agSV~ 792 (867)
T KOG2281|consen 713 GLQMLAEQTGFIDMDRVGVHGWSYGGYLSLMGLAQYPNIFRVAIAGAPVTDWRLYDTGYTERYMGYPDNNEHGYGAGSVA 792 (867)
T ss_pred HHHHHHHhcCcccchheeEeccccccHHHHHHhhcCcceeeEEeccCcceeeeeecccchhhhcCCCccchhcccchhHH
Confidence 99999998 58999999999999999999999999999999999999999998888777654 34444556667666766
Q ss_pred cccCCCC---CcEEEEEeCCCCCCCCchHHHHHHHHHHHhCCCcEEEEEeCCCCccCCCcccHHHHHHHHHHHHHH
Q 002209 824 MSANKLK---KPILLVHGEEDNNSGTLTMQSDRFFNALKGHGALCRLVILPFESHGYAARESIMHVLWETDRWLQK 896 (953)
Q Consensus 824 ~~~~~i~---~P~Li~~G~~D~~v~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~H~~~~~~~~~~~~~~i~~fl~~ 896 (953)
.++.++. ..+|++||--|++|+ +.+...+..+|-++|++.++++||++.|.....+.....-.+++.|+++
T Consensus 793 ~~VeklpdepnRLlLvHGliDENVH--F~Hts~Lvs~lvkagKpyeL~IfP~ERHsiR~~es~~~yE~rll~FlQ~ 866 (867)
T KOG2281|consen 793 GHVEKLPDEPNRLLLVHGLIDENVH--FAHTSRLVSALVKAGKPYELQIFPNERHSIRNPESGIYYEARLLHFLQE 866 (867)
T ss_pred HHHhhCCCCCceEEEEecccccchh--hhhHHHHHHHHHhCCCceEEEEccccccccCCCccchhHHHHHHHHHhh
Confidence 7777763 469999999999999 9999999999999999999999999999998888888888889999876
No 4
>KOG2100 consensus Dipeptidyl aminopeptidase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=1.1e-30 Score=307.66 Aligned_cols=325 Identities=26% Similarity=0.301 Sum_probs=245.6
Q ss_pred CCCeEEEEECCCCceEEEeccCcccceeeeEeeccCCccccccccCCEEEEEEecCCCCce-EEEEECCCCC-eeEEecC
Q 002209 550 NIPFLDLFDINTGSKERIWESDKEKYYETTVALMSDQTEGDLYLNQLKILTSKESKTENTQ-YYIQSWPDKK-SCQITDF 627 (953)
Q Consensus 550 ~~~~L~~~d~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~p~~-l~~~~~~~g~-~~~Lt~~ 627 (953)
...+||.+++.+.....++...... .... ...+++...+.++.....+..|.. +-.......+ ...|. .
T Consensus 412 ~~~~ly~i~~~~~~~~~lt~~~~~~---~~~~-----~~~~~~~~~~~~v~~~~gP~~p~~~~~~~~~~~~~~~~~Le-~ 482 (755)
T KOG2100|consen 412 SERHLYSISLGSGTVESLTCSLITG---PCTY-----LSVSFSKSAKYYVLSCSGPKVPDGQLTRHSSKNSKTIVVLE-T 482 (755)
T ss_pred CceEEEEEEccccccccccccCCCC---cceE-----EEEecCCcccEEEEEccCCCCCcceeeccccccceEEEEec-c
Confidence 3567999999988888877766430 0111 123566777888888888887743 2222211222 22333 2
Q ss_pred CCCCC----CcCCCceEEEEEEcCCCcEEEEEEEcCCCCCCCCCCCccEEEEeCCCCCcCcCCCCcccCCCCCCCCccch
Q 002209 628 PHPYP----QLASLQKELIKYQRKDGVQLSATLYLPPGYDPSKDGPLPCLFWSYPGEFKSKDAAGQVRGSPNEFPRIGST 703 (953)
Q Consensus 628 ~~~~~----~~~~~~~~~~~~~~~dg~~~~~~l~~P~~~~~~~~~~~P~vv~~hGg~~~~~~~~~~~~~~~~~~~~~~~~ 703 (953)
+..+. .......+..++.. +|....+.+.+|+++++++ ++|+||.+||||.. +++.. .+. ..+.
T Consensus 483 n~~~~~~~~~~~~p~~~~~~i~~-~~~~~~~~~~lP~~~~~~~--kyPllv~~yGGP~s-----q~v~~---~~~-~~~~ 550 (755)
T KOG2100|consen 483 NEELKKTIENVALPIVEFGKIEI-DGITANAILILPPNFDPSK--KYPLLVVVYGGPGS-----QSVTS---KFS-VDWN 550 (755)
T ss_pred ChhhHHHhhcccCCcceeEEEEe-ccEEEEEEEecCCCCCCCC--CCCEEEEecCCCCc-----ceeee---eEE-ecHH
Confidence 22221 12222223333333 8899999999999998877 49999999999852 11111 111 1122
Q ss_pred HHHHHHHcCcEEEEcCCCCCCCCCChhh---hhhhHHHHHHHHHHHHHHHHHcCCCCCCcEEEEEeChHHHHHHHHHHhC
Q 002209 704 SVLLWLARGFAILGGPTTPIIGEGDEEA---NDRFVEQLVACAEAAVEEVVRRGVAHPSKIAVGGHSYGAFMTANLLAHA 780 (953)
Q Consensus 704 ~~~~la~~G~~V~~~~~~~~~G~G~~~~---~~~~~~~~~~D~~~~~~~l~~~~~~d~~~i~l~G~S~GG~~a~~~a~~~ 780 (953)
...+..+|++|+..|++|..|+|..+. ..+++..++.|++.+++++.+++++|.+||+|+|+|+||++++.++.++
T Consensus 551 -~~~~s~~g~~v~~vd~RGs~~~G~~~~~~~~~~lG~~ev~D~~~~~~~~~~~~~iD~~ri~i~GwSyGGy~t~~~l~~~ 629 (755)
T KOG2100|consen 551 -EVVVSSRGFAVLQVDGRGSGGYGWDFRSALPRNLGDVEVKDQIEAVKKVLKLPFIDRSRVAIWGWSYGGYLTLKLLESD 629 (755)
T ss_pred -HHhhccCCeEEEEEcCCCcCCcchhHHHHhhhhcCCcchHHHHHHHHHHHhcccccHHHeEEeccChHHHHHHHHhhhC
Confidence 224567999999999999999999854 4566778999999999999999999999999999999999999999999
Q ss_pred C-CcccEEEEcccCCCCCCCCcCccccc-chhhhhHHHHHhcCcccccCCCCCcE-EEEEeCCCCCCCCchHHHHHHHHH
Q 002209 781 P-HLFCCGIARSGAYNRTLTPFGFQNED-RTLWEATSTYVEMSPFMSANKLKKPI-LLVHGEEDNNSGTLTMQSDRFFNA 857 (953)
Q Consensus 781 p-~~~~a~v~~~~~~d~~~~~~~~~~~~-~~~~~~~~~~~~~sp~~~~~~i~~P~-Li~~G~~D~~v~~~~~~~~~~~~~ 857 (953)
| +.|+|+|+++|++|+.+..-.+.... +.++++...|.+.++...++.++.|. |++||+.|.+|+ ++++.+++++
T Consensus 630 ~~~~fkcgvavaPVtd~~~yds~~terymg~p~~~~~~y~e~~~~~~~~~~~~~~~LliHGt~DdnVh--~q~s~~~~~a 707 (755)
T KOG2100|consen 630 PGDVFKCGVAVAPVTDWLYYDSTYTERYMGLPSENDKGYEESSVSSPANNIKTPKLLLIHGTEDDNVH--FQQSAILIKA 707 (755)
T ss_pred cCceEEEEEEecceeeeeeecccccHhhcCCCccccchhhhccccchhhhhccCCEEEEEcCCcCCcC--HHHHHHHHHH
Confidence 8 78999999999999886554444333 55666666799999999999998887 999999999999 9999999999
Q ss_pred HHhCCCcEEEEEeCCCCccCCCcccHHHHHHHHHHHHHHhc
Q 002209 858 LKGHGALCRLVILPFESHGYAARESIMHVLWETDRWLQKYC 898 (953)
Q Consensus 858 l~~~g~~~~~~~~~~~~H~~~~~~~~~~~~~~i~~fl~~~l 898 (953)
|+.+|+++++++||+++|++...+...+++..+..||..++
T Consensus 708 L~~~gv~~~~~vypde~H~is~~~~~~~~~~~~~~~~~~~~ 748 (755)
T KOG2100|consen 708 LQNAGVPFRLLVYPDENHGISYVEVISHLYEKLDRFLRDCF 748 (755)
T ss_pred HHHCCCceEEEEeCCCCcccccccchHHHHHHHHHHHHHHc
Confidence 99999999999999999999887878899999999999554
No 5
>COG1770 PtrB Protease II [Amino acid transport and metabolism]
Probab=99.96 E-value=3.6e-25 Score=240.98 Aligned_cols=299 Identities=20% Similarity=0.213 Sum_probs=217.5
Q ss_pred CCeEEEEECCCCceEEEeccCcccceeeeEeeccCCccccccccCCEEEEEEecCCCCceEEEEECCCCCeeEEecCCCC
Q 002209 551 IPFLDLFDINTGSKERIWESDKEKYYETTVALMSDQTEGDLYLNQLKILTSKESKTENTQYYIQSWPDKKSCQITDFPHP 630 (953)
Q Consensus 551 ~~~L~~~d~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~p~~l~~~~~~~g~~~~Lt~~~~~ 630 (953)
.+.+++++.++++..-|.-.+.. |...+ ..+-.++...+++..++.++|.+++.+|+.+++.++|..-.
T Consensus 339 lp~v~v~~~~~~~~~~i~f~~~a-y~~~l--------~~~~e~~s~~lR~~ysS~ttP~~~~~~dm~t~er~~Lkqqe-- 407 (682)
T COG1770 339 LPRVVVRDRKTGEERGIAFDDEA-YSAGL--------SGNPEFDSDRLRYSYSSMTTPATLFDYDMATGERTLLKQQE-- 407 (682)
T ss_pred CceEEEEecCCCceeeEEecchh-hhccc--------cCCCCCCCccEEEEeecccccceeEEeeccCCcEEEEEecc--
Confidence 67799999988877765433322 11000 11223466799999999999999999999999999888643
Q ss_pred CCC-c--CCCceEEEEEEcCCCcEEEEEEEcCCCCCCCCCCCccEEEEeCCCCCcCcCCCCcccCCCCCCCCccchHHHH
Q 002209 631 YPQ-L--ASLQKELIKYQRKDGVQLSATLYLPPGYDPSKDGPLPCLFWSYPGEFKSKDAAGQVRGSPNEFPRIGSTSVLL 707 (953)
Q Consensus 631 ~~~-~--~~~~~~~~~~~~~dg~~~~~~l~~P~~~~~~~~~~~P~vv~~hGg~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 707 (953)
.+. + ..+..++++.+..||++|+..|+.-.++ ..+++.|++++.||.+..++++. |+ .....
T Consensus 408 V~~g~dp~~Y~s~riwa~a~dgv~VPVSLvyrkd~--~~~g~~p~lLygYGaYG~s~~p~---------Fs----~~~lS 472 (682)
T COG1770 408 VPGGFDPEDYVSRRIWATADDGVQVPVSLVYRKDT--KLDGSAPLLLYGYGAYGISMDPS---------FS----IARLS 472 (682)
T ss_pred CCCCCChhHeEEEEEEEEcCCCcEeeEEEEEeccc--CCCCCCcEEEEEeccccccCCcC---------cc----cceee
Confidence 332 3 3467899999999999999999987653 33567999999999875554432 32 22446
Q ss_pred HHHcCcEEEEcCCCCCCCCCChhhhh-hh--HHHHHHHHHHHHHHHHHcCCCCCCcEEEEEeChHHHHHHHHHHhCCCcc
Q 002209 708 WLARGFAILGGPTTPIIGEGDEEAND-RF--VEQLVACAEAAVEEVVRRGVAHPSKIAVGGHSYGAFMTANLLAHAPHLF 784 (953)
Q Consensus 708 la~~G~~V~~~~~~~~~G~G~~~~~~-~~--~~~~~~D~~~~~~~l~~~~~~d~~~i~l~G~S~GG~~a~~~a~~~p~~~ 784 (953)
|+.+||+......+|..-.|+.+... +. -.+-+.|.+++.++|.++++.++++|+++|.|+||.+...++.+.|++|
T Consensus 473 LlDRGfiyAIAHVRGGgelG~~WYe~GK~l~K~NTf~DFIa~a~~Lv~~g~~~~~~i~a~GGSAGGmLmGav~N~~P~lf 552 (682)
T COG1770 473 LLDRGFVYAIAHVRGGGELGRAWYEDGKLLNKKNTFTDFIAAARHLVKEGYTSPDRIVAIGGSAGGMLMGAVANMAPDLF 552 (682)
T ss_pred eecCceEEEEEEeecccccChHHHHhhhhhhccccHHHHHHHHHHHHHcCcCCccceEEeccCchhHHHHHHHhhChhhh
Confidence 88999877665555544455543321 11 2245899999999999999999999999999999999999999999999
Q ss_pred cEEEEcccCCCCCCCC----cCcccccchhhhh------HHHHHhcCcccccCCCC-CcEEEEEeCCCCCCCCchHHHHH
Q 002209 785 CCGIARSGAYNRTLTP----FGFQNEDRTLWEA------TSTYVEMSPFMSANKLK-KPILLVHGEEDNNSGTLTMQSDR 853 (953)
Q Consensus 785 ~a~v~~~~~~d~~~~~----~~~~~~~~~~~~~------~~~~~~~sp~~~~~~i~-~P~Li~~G~~D~~v~~~~~~~~~ 853 (953)
+++|+..|++|...+. ..+.......|.+ .+.+..+||.+++..-. +|+|++.|.+|.+|. +++..+
T Consensus 553 ~~iiA~VPFVDvltTMlD~slPLT~~E~~EWGNP~d~e~y~yikSYSPYdNV~a~~YP~ilv~~Gl~D~rV~--YwEpAK 630 (682)
T COG1770 553 AGIIAQVPFVDVLTTMLDPSLPLTVTEWDEWGNPLDPEYYDYIKSYSPYDNVEAQPYPAILVTTGLNDPRVQ--YWEPAK 630 (682)
T ss_pred hheeecCCccchhhhhcCCCCCCCccchhhhCCcCCHHHHHHHhhcCchhccccCCCCceEEEccccCCccc--cchHHH
Confidence 9999999998832211 1111112222322 34456789999887754 578999999999999 999999
Q ss_pred HHHHHHhCCC---cEEEEEeCCCCccC
Q 002209 854 FFNALKGHGA---LCRLVILPFESHGY 877 (953)
Q Consensus 854 ~~~~l~~~g~---~~~~~~~~~~~H~~ 877 (953)
+..+|+..+. ++-+..-..+||+-
T Consensus 631 WvAkLR~~~td~~plLlkt~M~aGHgG 657 (682)
T COG1770 631 WVAKLRELKTDGNPLLLKTNMDAGHGG 657 (682)
T ss_pred HHHHHhhcccCCCcEEEEecccccCCC
Confidence 9999997643 34455546789964
No 6
>PF00326 Peptidase_S9: Prolyl oligopeptidase family This family belongs to family S9 of the peptidase classification.; InterPro: IPR001375 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This domain covers the active site serine of the serine peptidases belonging to MEROPS peptidase family S9 (prolyl oligopeptidase family, clan SC). The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. Examples of protein families containing this domain are: Prolyl endopeptidase (3.4.21.26 from EC) (PE) (also called post-proline cleaving enzyme). PE is an enzyme that cleaves peptide bonds on the C-terminal side of prolyl residues. The sequence of PE has been obtained from a mammalian species (pig) and from bacteria (Flavobacterium meningosepticum and Aeromonas hydrophila); there is a high degree of sequence conservation between these sequences. Escherichia coli protease II (3.4.21.83 from EC) (oligopeptidase B) (gene prtB) which cleaves peptide bonds on the C-terminal side of lysyl and argininyl residues. Dipeptidyl peptidase IV (3.4.14.5 from EC) (DPP IV). DPP IV is an enzyme that removes N-terminal dipeptides sequentially from polypeptides having unsubstituted N-termini provided that the penultimate residue is proline. Saccharomyces cerevisiae (Baker's yeast) vacuolar dipeptidyl aminopeptidases A and B (DPAP A and DPAP B), encoded by the STE13 and DAP2 genes respectively. DPAP A is responsible for the proteolytic maturation of the alpha-factor precursor. Acylamino-acid-releasing enzyme (3.4.19.1 from EC) (acyl-peptide hydrolase). This enzyme catalyses the hydrolysis of the amino-terminal peptide bond of an N-acetylated protein to generate a N-acetylated amino acid and a protein with a free amino-terminus. These proteins belong to MEROPS peptidase families S9A, S9B and S9C.; GO: 0008236 serine-type peptidase activity, 0006508 proteolysis; PDB: 2AJ8_D 1ORV_D 2AJB_C 2BUC_D 1ORW_D 2AJC_D 2AJD_C 2BUA_A 2HU8_B 3O4J_B ....
Probab=99.95 E-value=5.7e-27 Score=240.31 Aligned_cols=195 Identities=26% Similarity=0.406 Sum_probs=165.6
Q ss_pred HHHHHHHcCcEEEEcCCCCCCCCCChhhh---hhhHHHHHHHHHHHHHHHHHcCCCCCCcEEEEEeChHHHHHHHHHHhC
Q 002209 704 SVLLWLARGFAILGGPTTPIIGEGDEEAN---DRFVEQLVACAEAAVEEVVRRGVAHPSKIAVGGHSYGAFMTANLLAHA 780 (953)
Q Consensus 704 ~~~~la~~G~~V~~~~~~~~~G~G~~~~~---~~~~~~~~~D~~~~~~~l~~~~~~d~~~i~l~G~S~GG~~a~~~a~~~ 780 (953)
..++|+++||+|+.++++|+.|+|..+.. ..+....+.|+++++++|++++.+|++||+|+|+|+||++++.++.++
T Consensus 6 ~~~~la~~Gy~v~~~~~rGs~g~g~~~~~~~~~~~~~~~~~D~~~~i~~l~~~~~iD~~ri~i~G~S~GG~~a~~~~~~~ 85 (213)
T PF00326_consen 6 NAQLLASQGYAVLVPNYRGSGGYGKDFHEAGRGDWGQADVDDVVAAIEYLIKQYYIDPDRIGIMGHSYGGYLALLAATQH 85 (213)
T ss_dssp HHHHHHTTT-EEEEEE-TTSSSSHHHHHHTTTTGTTHHHHHHHHHHHHHHHHTTSEEEEEEEEEEETHHHHHHHHHHHHT
T ss_pred HHHHHHhCCEEEEEEcCCCCCccchhHHHhhhccccccchhhHHHHHHHHhccccccceeEEEEcccccccccchhhccc
Confidence 45678899999999999999999987654 356678899999999999999999999999999999999999999999
Q ss_pred CCcccEEEEcccCCCCCCCCcC---ccc----ccchhhhhHHHHHhcCcccccCC--CCCcEEEEEeCCCCCCCCchHHH
Q 002209 781 PHLFCCGIARSGAYNRTLTPFG---FQN----EDRTLWEATSTYVEMSPFMSANK--LKKPILLVHGEEDNNSGTLTMQS 851 (953)
Q Consensus 781 p~~~~a~v~~~~~~d~~~~~~~---~~~----~~~~~~~~~~~~~~~sp~~~~~~--i~~P~Li~~G~~D~~v~~~~~~~ 851 (953)
|++|+|+|+.+|++|....... +.. ....++...+.|...+|+..+.+ +++|+||+||++|.+|| +.++
T Consensus 86 ~~~f~a~v~~~g~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~P~li~hG~~D~~Vp--~~~s 163 (213)
T PF00326_consen 86 PDRFKAAVAGAGVSDLFSYYGTTDIYTKAEYLEYGDPWDNPEFYRELSPISPADNVQIKPPVLIIHGENDPRVP--PSQS 163 (213)
T ss_dssp CCGSSEEEEESE-SSTTCSBHHTCCHHHGHHHHHSSTTTSHHHHHHHHHGGGGGGCGGGSEEEEEEETTBSSST--THHH
T ss_pred ceeeeeeeccceecchhcccccccccccccccccCccchhhhhhhhhccccccccccCCCCEEEEccCCCCccC--HHHH
Confidence 9999999999999886543211 111 11233456777888899999988 89999999999999999 9999
Q ss_pred HHHHHHHHhCCCcEEEEEeCCCCccCCCcccHHHHHHHHHHHHHHhccC
Q 002209 852 DRFFNALKGHGALCRLVILPFESHGYAARESIMHVLWETDRWLQKYCVS 900 (953)
Q Consensus 852 ~~~~~~l~~~g~~~~~~~~~~~~H~~~~~~~~~~~~~~i~~fl~~~l~~ 900 (953)
.+++++|++.|+++++++||+++|.+...+......+++.+||+++|+.
T Consensus 164 ~~~~~~L~~~g~~~~~~~~p~~gH~~~~~~~~~~~~~~~~~f~~~~l~~ 212 (213)
T PF00326_consen 164 LRLYNALRKAGKPVELLIFPGEGHGFGNPENRRDWYERILDFFDKYLKK 212 (213)
T ss_dssp HHHHHHHHHTTSSEEEEEETT-SSSTTSHHHHHHHHHHHHHHHHHHTT-
T ss_pred HHHHHHHHhcCCCEEEEEcCcCCCCCCCchhHHHHHHHHHHHHHHHcCC
Confidence 9999999999999999999999999887777889999999999999964
No 7
>PRK01029 tolB translocation protein TolB; Provisional
Probab=99.93 E-value=1.1e-23 Score=236.76 Aligned_cols=272 Identities=15% Similarity=0.132 Sum_probs=188.6
Q ss_pred hHHHhhcCCCCCCceecCCCCEEEEEecCCCCCccccccccceeceEEecCCCCCCcceeeeeceEEEEccCCCCCCcee
Q 002209 101 EIREIVDAPPLPALSFSPQRDKILFLKRRALPPLEELARPEEKLAGLRIDGKCNTRSRMSFYTGIGIHQLFPDGKLGQEI 180 (953)
Q Consensus 101 ~~~~~~~~~~~~~~~~SPDG~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~i~~~~~~g~~~~~~ 180 (953)
.+.+.+...-...+.++ +++|||+... .+.+.+... .+||+.|. || +..+
T Consensus 129 ~~~D~~~~~~tg~~g~~--~~~iayv~~~-------------------~~~~~~~~~-----~~l~~~d~--dG--~~~~ 178 (428)
T PRK01029 129 EAADTIHYALTGVPGIS--SGKIIFSLST-------------------TNSDTELKQ-----GELWSVDY--DG--QNLR 178 (428)
T ss_pred HHHHHHHHHHcCCCccc--cCEEEEEEee-------------------CCccccccc-----ceEEEEcC--CC--CCce
Confidence 34444433345566677 9999999874 222222222 48999887 55 5567
Q ss_pred eeecCCCCCcccceEeccCCCe--EEEEEeeccccCCCCcceEEEEECCCCceeecccCCCccccccccceEEecCCeEE
Q 002209 181 EIQGFPDGAKLNFVTWSQDGKH--LAFSIRIDAEDSSSSKLRVWVADVDTGKARPLFQSPDIYLNAIFDNFVWVNNSTLL 258 (953)
Q Consensus 181 ~l~~~~~~~~~~~~~wSPDG~~--laf~~~~~~~~~~~~~~~l~~~d~~~g~~~~lt~~~~~~~~~~~~~~~wspDg~~l 258 (953)
+||. ....+..|+|||||++ ++|++. .++..+||++++++|+.++|+..+.. ...+.|||||+.|
T Consensus 179 ~lt~--~~~~~~sP~wSPDG~~~~~~y~S~------~~g~~~I~~~~l~~g~~~~lt~~~g~-----~~~p~wSPDG~~L 245 (428)
T PRK01029 179 PLTQ--EHSLSITPTWMHIGSGFPYLYVSY------KLGVPKIFLGSLENPAGKKILALQGN-----QLMPTFSPRKKLL 245 (428)
T ss_pred Eccc--CCCCcccceEccCCCceEEEEEEc------cCCCceEEEEECCCCCceEeecCCCC-----ccceEECCCCCEE
Confidence 7764 2235789999999998 455654 44678999999999999999876653 3478999999999
Q ss_pred EEEecCCCCCCCCCCCCCCCCceeecCCCccccchhhhhhcCCcchhhhhhhhccceEEE--EEc-C---CceeEeCCC-
Q 002209 259 VCTIPLLRGDPPKKPLVPLGPKMQSNEKRDIIQVRTFQDLLKDEYDEDLFDYYATTQLVL--VSL-D---GTVKEIGPP- 331 (953)
Q Consensus 259 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~l~~--~~~-~---g~~~~l~~~- 331 (953)
+|+.... +..++|+ +++ + |+.++++..
T Consensus 246 af~s~~~----------------------------------------------g~~di~~~~~~~~~g~~g~~~~lt~~~ 279 (428)
T PRK01029 246 AFISDRY----------------------------------------------GNPDLFIQSFSLETGAIGKPRRLLNEA 279 (428)
T ss_pred EEEECCC----------------------------------------------CCcceeEEEeecccCCCCcceEeecCC
Confidence 9883110 1123444 344 3 466777754
Q ss_pred -CcccccccCCCCcEEEEEEecCCccccccCCCCCcceEEEecc--CceEEEeccCCCcccCCccccccccCccceeecc
Q 002209 332 -AVYTSLDPSPDEKYILISSIHRPYSFIVPCGRFPRQVGVWTTD--GIFVRELCDLPLAEDIPIAFNSVRKGMRSINWRS 408 (953)
Q Consensus 332 -~~~~~~~~SpDG~~l~~~~~~~~~~~~~~~~~~~~~i~~~d~~--g~~~~~l~~~~~~~~~p~~~~~~~~~~~~~~wsp 408 (953)
.....++|||||++|+|++.... ..+||+++++ ++..+.++.... ....+.|||
T Consensus 280 ~~~~~~p~wSPDG~~Laf~s~~~g----------~~~ly~~~~~~~g~~~~~lt~~~~-------------~~~~p~wSP 336 (428)
T PRK01029 280 FGTQGNPSFSPDGTRLVFVSNKDG----------RPRIYIMQIDPEGQSPRLLTKKYR-------------NSSCPAWSP 336 (428)
T ss_pred CCCcCCeEECCCCCEEEEEECCCC----------CceEEEEECcccccceEEeccCCC-------------CccceeECC
Confidence 34578999999999999984321 1278888886 345666665321 224688999
Q ss_pred CCCCceEEEEeccCCCcccccccCCeEEEEecCCCCCCCceEEeecccccCCeeeccCCceEEEEEecccCceEEEEEcC
Q 002209 409 DKPSTLYWAETQDGGDAKVEVTPRDIIYTQQAEPVQGEGPEILHKLDLRYGGISWCDDSLALVYESWYKTRRTRTWVISP 488 (953)
Q Consensus 409 Dg~~i~~~~~~~~~~~~~~~~~~~~~l~~~d~~~~~g~~~~~l~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~l~~~d~ 488 (953)
||+.|+|.... .+...|+++|+ ++++.+.++........+.|||||+.|+|.....+ ...||.+++
T Consensus 337 DG~~Laf~~~~----------~g~~~I~v~dl---~~g~~~~Lt~~~~~~~~p~wSpDG~~L~f~~~~~g-~~~L~~vdl 402 (428)
T PRK01029 337 DGKKIAFCSVI----------KGVRQICVYDL---ATGRDYQLTTSPENKESPSWAIDSLHLVYSAGNSN-ESELYLISL 402 (428)
T ss_pred CCCEEEEEEcC----------CCCcEEEEEEC---CCCCeEEccCCCCCccceEECCCCCEEEEEECCCC-CceEEEEEC
Confidence 99999998321 12357999996 77788888766656678999999999999876543 358999999
Q ss_pred CCCCCCcEEeec
Q 002209 489 GSKDVAPRILFD 500 (953)
Q Consensus 489 ~~~~~~~~~~~~ 500 (953)
+++ +.+.++.
T Consensus 403 ~~g--~~~~Lt~ 412 (428)
T PRK01029 403 ITK--KTRKIVI 412 (428)
T ss_pred CCC--CEEEeec
Confidence 885 4555654
No 8
>PRK01029 tolB translocation protein TolB; Provisional
Probab=99.91 E-value=1.8e-22 Score=226.90 Aligned_cols=265 Identities=17% Similarity=0.153 Sum_probs=185.1
Q ss_pred eEeccCCCeEEEEEeeccccCCCCcceEEEEECCCCceeecccCCCccccccccceEEecCCeEE--EEEecCCCCCCCC
Q 002209 194 VTWSQDGKHLAFSIRIDAEDSSSSKLRVWVADVDTGKARPLFQSPDIYLNAIFDNFVWVNNSTLL--VCTIPLLRGDPPK 271 (953)
Q Consensus 194 ~~wSPDG~~laf~~~~~~~~~~~~~~~l~~~d~~~g~~~~lt~~~~~~~~~~~~~~~wspDg~~l--~~~~~~~~~~~~~ 271 (953)
+..+ +++|||+....+...+....+||++|.+|+.+++||..... ..++.|||||+.+ +|.+
T Consensus 142 ~g~~--~~~iayv~~~~~~~~~~~~~~l~~~d~dG~~~~~lt~~~~~-----~~sP~wSPDG~~~~~~y~S--------- 205 (428)
T PRK01029 142 PGIS--SGKIIFSLSTTNSDTELKQGELWSVDYDGQNLRPLTQEHSL-----SITPTWMHIGSGFPYLYVS--------- 205 (428)
T ss_pred Cccc--cCEEEEEEeeCCcccccccceEEEEcCCCCCceEcccCCCC-----cccceEccCCCceEEEEEE---------
Confidence 4445 88999998754332233467999999999999999986543 4589999999864 3341
Q ss_pred CCCCCCCCceeecCCCccccchhhhhhcCCcchhhhhhhhccceEEEEEc-CCceeEeCCC-CcccccccCCCCcEEEEE
Q 002209 272 KPLVPLGPKMQSNEKRDIIQVRTFQDLLKDEYDEDLFDYYATTQLVLVSL-DGTVKEIGPP-AVYTSLDPSPDEKYILIS 349 (953)
Q Consensus 272 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~l~~~~~-~g~~~~l~~~-~~~~~~~~SpDG~~l~~~ 349 (953)
+.. +..+||++++ +|+.++|+.. +....+.|||||++|+|+
T Consensus 206 -----------------------------~~~--------g~~~I~~~~l~~g~~~~lt~~~g~~~~p~wSPDG~~Laf~ 248 (428)
T PRK01029 206 -----------------------------YKL--------GVPKIFLGSLENPAGKKILALQGNQLMPTFSPRKKLLAFI 248 (428)
T ss_pred -----------------------------ccC--------CCceEEEEECCCCCceEeecCCCCccceEECCCCCEEEEE
Confidence 111 3468999999 8888888876 666789999999999999
Q ss_pred EecCCccccccCCCCCcceEE--EeccC---ceEEEeccCCCcccCCccccccccCccceeeccCCCCceEEEEeccCCC
Q 002209 350 SIHRPYSFIVPCGRFPRQVGV--WTTDG---IFVRELCDLPLAEDIPIAFNSVRKGMRSINWRSDKPSTLYWAETQDGGD 424 (953)
Q Consensus 350 ~~~~~~~~~~~~~~~~~~i~~--~d~~g---~~~~~l~~~~~~~~~p~~~~~~~~~~~~~~wspDg~~i~~~~~~~~~~~ 424 (953)
+.... ..++++ |++++ +..++++.... .....++|||||+.|+|..+.
T Consensus 249 s~~~g----------~~di~~~~~~~~~g~~g~~~~lt~~~~------------~~~~~p~wSPDG~~Laf~s~~----- 301 (428)
T PRK01029 249 SDRYG----------NPDLFIQSFSLETGAIGKPRRLLNEAF------------GTQGNPSFSPDGTRLVFVSNK----- 301 (428)
T ss_pred ECCCC----------CcceeEEEeecccCCCCcceEeecCCC------------CCcCCeEECCCCCEEEEEECC-----
Confidence 84321 115555 45553 45566664321 112468899999999998432
Q ss_pred cccccccCCeEEEEecCCCCCCCceEEeecccccCCeeeccCCceEEEEEecccCceEEEEEcCCCCCCCcEEeecCCCc
Q 002209 425 AKVEVTPRDIIYTQQAEPVQGEGPEILHKLDLRYGGISWCDDSLALVYESWYKTRRTRTWVISPGSKDVAPRILFDRSSE 504 (953)
Q Consensus 425 ~~~~~~~~~~l~~~d~~~~~g~~~~~l~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~ 504 (953)
++..+||++++ ...++..+.++........+.|||||++|+|....++ ..+||++|++++ +.+.++.....
T Consensus 302 -----~g~~~ly~~~~-~~~g~~~~~lt~~~~~~~~p~wSPDG~~Laf~~~~~g-~~~I~v~dl~~g--~~~~Lt~~~~~ 372 (428)
T PRK01029 302 -----DGRPRIYIMQI-DPEGQSPRLLTKKYRNSSCPAWSPDGKKIAFCSVIKG-VRQICVYDLATG--RDYQLTTSPEN 372 (428)
T ss_pred -----CCCceEEEEEC-cccccceEEeccCCCCccceeECCCCCEEEEEEcCCC-CcEEEEEECCCC--CeEEccCCCCC
Confidence 22347888885 1123456777766556678999999999999876543 358999999886 45566543211
Q ss_pred cccCCCCCCCeEeccCCCEEEEEeeeccCCCcEEEEecCCCCCCCCCCeEEEEECCCCceEEEeccCc
Q 002209 505 DVYSDPGSPMMRRTSTGTYVIAKIKKENDEGTYILLNGNGATPEGNIPFLDLFDINTGSKERIWESDK 572 (953)
Q Consensus 505 ~~~~~~~~p~~~~SpDG~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~d~~~~~~~~l~~~~~ 572 (953)
.. . +.|||||++|+|..... ....||++|+++++.++|+...+
T Consensus 373 -~~----~--p~wSpDG~~L~f~~~~~------------------g~~~L~~vdl~~g~~~~Lt~~~g 415 (428)
T PRK01029 373 -KE----S--PSWAIDSLHLVYSAGNS------------------NESELYLISLITKKTRKIVIGSG 415 (428)
T ss_pred -cc----c--eEECCCCCEEEEEECCC------------------CCceEEEEECCCCCEEEeecCCC
Confidence 11 1 67999999999986321 23469999999999999987654
No 9
>PRK05137 tolB translocation protein TolB; Provisional
Probab=99.91 E-value=2.5e-22 Score=228.55 Aligned_cols=229 Identities=16% Similarity=0.195 Sum_probs=172.1
Q ss_pred eceEEEEccCCCCCCceeeeecCCCCCcccceEeccCCCeEEEEEeeccccCCCCcceEEEEECCCCceeecccCCCccc
Q 002209 163 TGIGIHQLFPDGKLGQEIEIQGFPDGAKLNFVTWSQDGKHLAFSIRIDAEDSSSSKLRVWVADVDTGKARPLFQSPDIYL 242 (953)
Q Consensus 163 ~~i~i~~~~~~g~~~~~~~l~~~~~~~~~~~~~wSPDG~~laf~~~~~~~~~~~~~~~l~~~d~~~g~~~~lt~~~~~~~ 242 (953)
.+||++|. +| ...++++.. ...+..|+|||||++|+|.+. .++..+||++|+++|+.++++..+..
T Consensus 182 ~~l~~~d~--dg--~~~~~lt~~--~~~v~~p~wSpDG~~lay~s~------~~g~~~i~~~dl~~g~~~~l~~~~g~-- 247 (435)
T PRK05137 182 KRLAIMDQ--DG--ANVRYLTDG--SSLVLTPRFSPNRQEITYMSY------ANGRPRVYLLDLETGQRELVGNFPGM-- 247 (435)
T ss_pred eEEEEECC--CC--CCcEEEecC--CCCeEeeEECCCCCEEEEEEe------cCCCCEEEEEECCCCcEEEeecCCCc--
Confidence 38999997 44 455667642 246889999999999999874 33568999999999998888765542
Q ss_pred cccccceEEecCCeEEEEEecCCCCCCCCCCCCCCCCceeecCCCccccchhhhhhcCCcchhhhhhhhccceEEEEEc-
Q 002209 243 NAIFDNFVWVNNSTLLVCTIPLLRGDPPKKPLVPLGPKMQSNEKRDIIQVRTFQDLLKDEYDEDLFDYYATTQLVLVSL- 321 (953)
Q Consensus 243 ~~~~~~~~wspDg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~l~~~~~- 321 (953)
...+.|||||+.|+|+... + +..+||++|+
T Consensus 248 ---~~~~~~SPDG~~la~~~~~---------------------------------------~-------g~~~Iy~~d~~ 278 (435)
T PRK05137 248 ---TFAPRFSPDGRKVVMSLSQ---------------------------------------G-------GNTDIYTMDLR 278 (435)
T ss_pred ---ccCcEECCCCCEEEEEEec---------------------------------------C-------CCceEEEEECC
Confidence 4588999999999887210 0 3467999999
Q ss_pred CCceeEeCCC-CcccccccCCCCcEEEEEEecCCccccccCCCCCcceEEEeccCceEEEeccCCCcccCCccccccccC
Q 002209 322 DGTVKEIGPP-AVYTSLDPSPDEKYILISSIHRPYSFIVPCGRFPRQVGVWTTDGIFVRELCDLPLAEDIPIAFNSVRKG 400 (953)
Q Consensus 322 ~g~~~~l~~~-~~~~~~~~SpDG~~l~~~~~~~~~~~~~~~~~~~~~i~~~d~~g~~~~~l~~~~~~~~~p~~~~~~~~~ 400 (953)
+|+.++++.. .....+.|||||++|+|++.+.. ..+||++|++++..++++.... .
T Consensus 279 ~~~~~~Lt~~~~~~~~~~~spDG~~i~f~s~~~g----------~~~Iy~~d~~g~~~~~lt~~~~-------------~ 335 (435)
T PRK05137 279 SGTTTRLTDSPAIDTSPSYSPDGSQIVFESDRSG----------SPQLYVMNADGSNPRRISFGGG-------------R 335 (435)
T ss_pred CCceEEccCCCCccCceeEcCCCCEEEEEECCCC----------CCeEEEEECCCCCeEEeecCCC-------------c
Confidence 8888999876 56678999999999999985431 2389999999988888875321 2
Q ss_pred ccceeeccCCCCceEEEEeccCCCcccccccCCeEEEEecCCCCCCCceEEeecccccCCeeeccCCceEEEEEecccCc
Q 002209 401 MRSINWRSDKPSTLYWAETQDGGDAKVEVTPRDIIYTQQAEPVQGEGPEILHKLDLRYGGISWCDDSLALVYESWYKTRR 480 (953)
Q Consensus 401 ~~~~~wspDg~~i~~~~~~~~~~~~~~~~~~~~~l~~~d~~~~~g~~~~~l~~~~~~~~~~~~SpDg~~l~~~~~~~~~~ 480 (953)
...+.|||||+.|+|... + .+...++++++ +++..+.++.. .....+.|||||+.|+|.....+..
T Consensus 336 ~~~~~~SpdG~~ia~~~~--~--------~~~~~i~~~d~---~~~~~~~lt~~-~~~~~p~~spDG~~i~~~~~~~~~~ 401 (435)
T PRK05137 336 YSTPVWSPRGDLIAFTKQ--G--------GGQFSIGVMKP---DGSGERILTSG-FLVEGPTWAPNGRVIMFFRQTPGSG 401 (435)
T ss_pred ccCeEECCCCCEEEEEEc--C--------CCceEEEEEEC---CCCceEeccCC-CCCCCCeECCCCCEEEEEEccCCCC
Confidence 245789999999998731 1 12347889985 66666666543 3567899999999999987654331
Q ss_pred --eEEEEEcCCCC
Q 002209 481 --TRTWVISPGSK 491 (953)
Q Consensus 481 --~~l~~~d~~~~ 491 (953)
..||.++++++
T Consensus 402 ~~~~L~~~dl~g~ 414 (435)
T PRK05137 402 GAPKLYTVDLTGR 414 (435)
T ss_pred CcceEEEEECCCC
Confidence 48999999885
No 10
>PRK03629 tolB translocation protein TolB; Provisional
Probab=99.91 E-value=3.4e-22 Score=225.76 Aligned_cols=228 Identities=15% Similarity=0.152 Sum_probs=171.2
Q ss_pred eceEEEEccCCCCCCceeeeecCCCCCcccceEeccCCCeEEEEEeeccccCCCCcceEEEEECCCCceeecccCCCccc
Q 002209 163 TGIGIHQLFPDGKLGQEIEIQGFPDGAKLNFVTWSQDGKHLAFSIRIDAEDSSSSKLRVWVADVDTGKARPLFQSPDIYL 242 (953)
Q Consensus 163 ~~i~i~~~~~~g~~~~~~~l~~~~~~~~~~~~~wSPDG~~laf~~~~~~~~~~~~~~~l~~~d~~~g~~~~lt~~~~~~~ 242 (953)
.+||++|. || ...+.++. ....+..|+|||||++|+|++. ..+..+||++++++|+.++++..+..
T Consensus 179 ~~l~~~d~--dg--~~~~~lt~--~~~~~~~p~wSPDG~~la~~s~------~~g~~~i~i~dl~~G~~~~l~~~~~~-- 244 (429)
T PRK03629 179 YELRVSDY--DG--YNQFVVHR--SPQPLMSPAWSPDGSKLAYVTF------ESGRSALVIQTLANGAVRQVASFPRH-- 244 (429)
T ss_pred eeEEEEcC--CC--CCCEEeec--CCCceeeeEEcCCCCEEEEEEe------cCCCcEEEEEECCCCCeEEccCCCCC--
Confidence 48999998 44 44566654 2236889999999999999864 33567999999999999888865542
Q ss_pred cccccceEEecCCeEEEEEecCCCCCCCCCCCCCCCCceeecCCCccccchhhhhhcCCcchhhhhhhhccceEEEEEc-
Q 002209 243 NAIFDNFVWVNNSTLLVCTIPLLRGDPPKKPLVPLGPKMQSNEKRDIIQVRTFQDLLKDEYDEDLFDYYATTQLVLVSL- 321 (953)
Q Consensus 243 ~~~~~~~~wspDg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~l~~~~~- 321 (953)
...+.|||||+.|+|+... + +..+||++|+
T Consensus 245 ---~~~~~~SPDG~~La~~~~~---------------------------------------~-------g~~~I~~~d~~ 275 (429)
T PRK03629 245 ---NGAPAFSPDGSKLAFALSK---------------------------------------T-------GSLNLYVMDLA 275 (429)
T ss_pred ---cCCeEECCCCCEEEEEEcC---------------------------------------C-------CCcEEEEEECC
Confidence 4579999999999987210 0 3357999999
Q ss_pred CCceeEeCCC-CcccccccCCCCcEEEEEEecCCccccccCCCCCcceEEEeccCceEEEeccCCCcccCCccccccccC
Q 002209 322 DGTVKEIGPP-AVYTSLDPSPDEKYILISSIHRPYSFIVPCGRFPRQVGVWTTDGIFVRELCDLPLAEDIPIAFNSVRKG 400 (953)
Q Consensus 322 ~g~~~~l~~~-~~~~~~~~SpDG~~l~~~~~~~~~~~~~~~~~~~~~i~~~d~~g~~~~~l~~~~~~~~~p~~~~~~~~~ 400 (953)
+|+.++++.. .....+.|||||++|+|++.+.. ..+||++++++++.++++.... .
T Consensus 276 tg~~~~lt~~~~~~~~~~wSPDG~~I~f~s~~~g----------~~~Iy~~d~~~g~~~~lt~~~~-------------~ 332 (429)
T PRK03629 276 SGQIRQVTDGRSNNTEPTWFPDSQNLAYTSDQAG----------RPQVYKVNINGGAPQRITWEGS-------------Q 332 (429)
T ss_pred CCCEEEccCCCCCcCceEECCCCCEEEEEeCCCC----------CceEEEEECCCCCeEEeecCCC-------------C
Confidence 8888898876 66788999999999999985431 2379999999888777764321 1
Q ss_pred ccceeeccCCCCceEEEEeccCCCcccccccCCeEEEEecCCCCCCCceEEeecccccCCeeeccCCceEEEEEecccCc
Q 002209 401 MRSINWRSDKPSTLYWAETQDGGDAKVEVTPRDIIYTQQAEPVQGEGPEILHKLDLRYGGISWCDDSLALVYESWYKTRR 480 (953)
Q Consensus 401 ~~~~~wspDg~~i~~~~~~~~~~~~~~~~~~~~~l~~~d~~~~~g~~~~~l~~~~~~~~~~~~SpDg~~l~~~~~~~~~~ 480 (953)
...+.|||||+.|+|.... .....++++++ ++++.+.|+.. .....+.|||||+.|+|.+.++. .
T Consensus 333 ~~~~~~SpDG~~Ia~~~~~----------~g~~~I~~~dl---~~g~~~~Lt~~-~~~~~p~~SpDG~~i~~~s~~~~-~ 397 (429)
T PRK03629 333 NQDADVSSDGKFMVMVSSN----------GGQQHIAKQDL---ATGGVQVLTDT-FLDETPSIAPNGTMVIYSSSQGM-G 397 (429)
T ss_pred ccCEEECCCCCEEEEEEcc----------CCCceEEEEEC---CCCCeEEeCCC-CCCCCceECCCCCEEEEEEcCCC-c
Confidence 2358899999999987321 12347899996 66777777743 33467999999999999987654 3
Q ss_pred eEEEEEcCCCC
Q 002209 481 TRTWVISPGSK 491 (953)
Q Consensus 481 ~~l~~~d~~~~ 491 (953)
..|+++++++.
T Consensus 398 ~~l~~~~~~G~ 408 (429)
T PRK03629 398 SVLNLVSTDGR 408 (429)
T ss_pred eEEEEEECCCC
Confidence 57999999874
No 11
>PRK04043 tolB translocation protein TolB; Provisional
Probab=99.90 E-value=1e-21 Score=218.85 Aligned_cols=230 Identities=11% Similarity=0.056 Sum_probs=170.4
Q ss_pred ceEEEEccCCCCCCceeeeecCCCCCcccceEeccCCCe-EEEEEeeccccCCCCcceEEEEECCCCceeecccCCCccc
Q 002209 164 GIGIHQLFPDGKLGQEIEIQGFPDGAKLNFVTWSQDGKH-LAFSIRIDAEDSSSSKLRVWVADVDTGKARPLFQSPDIYL 242 (953)
Q Consensus 164 ~i~i~~~~~~g~~~~~~~l~~~~~~~~~~~~~wSPDG~~-laf~~~~~~~~~~~~~~~l~~~d~~~g~~~~lt~~~~~~~ 242 (953)
+||+.|. || ...+.++. .+ ....|.|||||++ ++|++. .++..+||++|+.+|+.++|+..+..
T Consensus 170 ~l~~~d~--dg--~~~~~~~~--~~-~~~~p~wSpDG~~~i~y~s~------~~~~~~Iyv~dl~tg~~~~lt~~~g~-- 234 (419)
T PRK04043 170 NIVLADY--TL--TYQKVIVK--GG-LNIFPKWANKEQTAFYYTSY------GERKPTLYKYNLYTGKKEKIASSQGM-- 234 (419)
T ss_pred eEEEECC--CC--CceeEEcc--CC-CeEeEEECCCCCcEEEEEEc------cCCCCEEEEEECCCCcEEEEecCCCc--
Confidence 8899887 55 44555542 23 5778999999997 666553 22367999999999999999875442
Q ss_pred cccccceEEecCCeEEEEEecCCCCCCCCCCCCCCCCceeecCCCccccchhhhhhcCCcchhhhhhhhccceEEEEEc-
Q 002209 243 NAIFDNFVWVNNSTLLVCTIPLLRGDPPKKPLVPLGPKMQSNEKRDIIQVRTFQDLLKDEYDEDLFDYYATTQLVLVSL- 321 (953)
Q Consensus 243 ~~~~~~~~wspDg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~l~~~~~- 321 (953)
...+.|||||+.|+|+... + +..+||++++
T Consensus 235 ---~~~~~~SPDG~~la~~~~~---------------------------------------~-------g~~~Iy~~dl~ 265 (419)
T PRK04043 235 ---LVVSDVSKDGSKLLLTMAP---------------------------------------K-------GQPDIYLYDTN 265 (419)
T ss_pred ---EEeeEECCCCCEEEEEEcc---------------------------------------C-------CCcEEEEEECC
Confidence 3468899999999987210 0 3468999999
Q ss_pred CCceeEeCCC-CcccccccCCCCcEEEEEEecCCccccccCCCCCcceEEEeccCceEEEeccCCCcccCCccccccccC
Q 002209 322 DGTVKEIGPP-AVYTSLDPSPDEKYILISSIHRPYSFIVPCGRFPRQVGVWTTDGIFVRELCDLPLAEDIPIAFNSVRKG 400 (953)
Q Consensus 322 ~g~~~~l~~~-~~~~~~~~SpDG~~l~~~~~~~~~~~~~~~~~~~~~i~~~d~~g~~~~~l~~~~~~~~~p~~~~~~~~~ 400 (953)
+|+.++|+.. .....+.|||||++|+|++.+.. ..+||++|+++++.++++...
T Consensus 266 ~g~~~~LT~~~~~d~~p~~SPDG~~I~F~Sdr~g----------~~~Iy~~dl~~g~~~rlt~~g--------------- 320 (419)
T PRK04043 266 TKTLTQITNYPGIDVNGNFVEDDKRIVFVSDRLG----------YPNIFMKKLNSGSVEQVVFHG--------------- 320 (419)
T ss_pred CCcEEEcccCCCccCccEECCCCCEEEEEECCCC----------CceEEEEECCCCCeEeCccCC---------------
Confidence 8889999876 44668899999999999995531 238999999998888877531
Q ss_pred ccceeeccCCCCceEEEEeccCCCcccccccCCeEEEEecCCCCCCCceEEeecccccCCeeeccCCceEEEEEecccCc
Q 002209 401 MRSINWRSDKPSTLYWAETQDGGDAKVEVTPRDIIYTQQAEPVQGEGPEILHKLDLRYGGISWCDDSLALVYESWYKTRR 480 (953)
Q Consensus 401 ~~~~~wspDg~~i~~~~~~~~~~~~~~~~~~~~~l~~~d~~~~~g~~~~~l~~~~~~~~~~~~SpDg~~l~~~~~~~~~~ 480 (953)
.....|||||+.|+|.....+.. . ......|+++++ +++..+.|+... ....+.|||||+.|+|....+ ..
T Consensus 321 ~~~~~~SPDG~~Ia~~~~~~~~~-~---~~~~~~I~v~d~---~~g~~~~LT~~~-~~~~p~~SPDG~~I~f~~~~~-~~ 391 (419)
T PRK04043 321 KNNSSVSTYKNYIVYSSRETNNE-F---GKNTFNLYLIST---NSDYIRRLTANG-VNQFPRFSSDGGSIMFIKYLG-NQ 391 (419)
T ss_pred CcCceECCCCCEEEEEEcCCCcc-c---CCCCcEEEEEEC---CCCCeEECCCCC-CcCCeEECCCCCEEEEEEccC-Cc
Confidence 12357999999999985332110 0 012358999996 777888888753 345799999999999997664 44
Q ss_pred eEEEEEcCCCC
Q 002209 481 TRTWVISPGSK 491 (953)
Q Consensus 481 ~~l~~~d~~~~ 491 (953)
..|+.+++++.
T Consensus 392 ~~L~~~~l~g~ 402 (419)
T PRK04043 392 SALGIIRLNYN 402 (419)
T ss_pred EEEEEEecCCC
Confidence 68999999884
No 12
>PRK02889 tolB translocation protein TolB; Provisional
Probab=99.89 E-value=2.1e-21 Score=219.68 Aligned_cols=227 Identities=18% Similarity=0.179 Sum_probs=167.2
Q ss_pred ceEEEEccCCCCCCceeeeecCCCCCcccceEeccCCCeEEEEEeeccccCCCCcceEEEEECCCCceeecccCCCcccc
Q 002209 164 GIGIHQLFPDGKLGQEIEIQGFPDGAKLNFVTWSQDGKHLAFSIRIDAEDSSSSKLRVWVADVDTGKARPLFQSPDIYLN 243 (953)
Q Consensus 164 ~i~i~~~~~~g~~~~~~~l~~~~~~~~~~~~~wSPDG~~laf~~~~~~~~~~~~~~~l~~~d~~~g~~~~lt~~~~~~~~ 243 (953)
+||++|. +| ...++++. ....+..|+|||||++|+|.+. .++..+||++|+++|+.++++..+..
T Consensus 177 ~L~~~D~--dG--~~~~~l~~--~~~~v~~p~wSPDG~~la~~s~------~~~~~~I~~~dl~~g~~~~l~~~~g~--- 241 (427)
T PRK02889 177 QLQISDA--DG--QNAQSALS--SPEPIISPAWSPDGTKLAYVSF------ESKKPVVYVHDLATGRRRVVANFKGS--- 241 (427)
T ss_pred EEEEECC--CC--CCceEecc--CCCCcccceEcCCCCEEEEEEc------cCCCcEEEEEECCCCCEEEeecCCCC---
Confidence 7899887 44 34455543 2346889999999999999774 34567899999999998888755532
Q ss_pred ccccceEEecCCeEEEEEecCCCCCCCCCCCCCCCCceeecCCCccccchhhhhhcCCcchhhhhhhhccceEEEEEc-C
Q 002209 244 AIFDNFVWVNNSTLLVCTIPLLRGDPPKKPLVPLGPKMQSNEKRDIIQVRTFQDLLKDEYDEDLFDYYATTQLVLVSL-D 322 (953)
Q Consensus 244 ~~~~~~~wspDg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~l~~~~~-~ 322 (953)
...+.|||||+.|+++.. . + +..+||++++ +
T Consensus 242 --~~~~~~SPDG~~la~~~~--------------------------------------~-~-------g~~~Iy~~d~~~ 273 (427)
T PRK02889 242 --NSAPAWSPDGRTLAVALS--------------------------------------R-D-------GNSQIYTVNADG 273 (427)
T ss_pred --ccceEECCCCCEEEEEEc--------------------------------------c-C-------CCceEEEEECCC
Confidence 457999999999988621 0 1 3357999999 7
Q ss_pred CceeEeCCC-CcccccccCCCCcEEEEEEecCCccccccCCCCCcceEEEeccCceEEEeccCCCcccCCccccccccCc
Q 002209 323 GTVKEIGPP-AVYTSLDPSPDEKYILISSIHRPYSFIVPCGRFPRQVGVWTTDGIFVRELCDLPLAEDIPIAFNSVRKGM 401 (953)
Q Consensus 323 g~~~~l~~~-~~~~~~~~SpDG~~l~~~~~~~~~~~~~~~~~~~~~i~~~d~~g~~~~~l~~~~~~~~~p~~~~~~~~~~ 401 (953)
+..++++.. ....++.|||||++|+|++.+.. ..+||+++++++..+.++.... ..
T Consensus 274 ~~~~~lt~~~~~~~~~~wSpDG~~l~f~s~~~g----------~~~Iy~~~~~~g~~~~lt~~g~-------------~~ 330 (427)
T PRK02889 274 SGLRRLTQSSGIDTEPFFSPDGRSIYFTSDRGG----------APQIYRMPASGGAAQRVTFTGS-------------YN 330 (427)
T ss_pred CCcEECCCCCCCCcCeEEcCCCCEEEEEecCCC----------CcEEEEEECCCCceEEEecCCC-------------Cc
Confidence 788888876 55678999999999999874321 2278888888777777664211 12
Q ss_pred cceeeccCCCCceEEEEeccCCCcccccccCCeEEEEecCCCCCCCceEEeecccccCCeeeccCCceEEEEEecccCce
Q 002209 402 RSINWRSDKPSTLYWAETQDGGDAKVEVTPRDIIYTQQAEPVQGEGPEILHKLDLRYGGISWCDDSLALVYESWYKTRRT 481 (953)
Q Consensus 402 ~~~~wspDg~~i~~~~~~~~~~~~~~~~~~~~~l~~~d~~~~~g~~~~~l~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~ 481 (953)
..++|||||+.|+|.... .....|+++++ .+++.+.++... ....+.|||||+.|+|..+.++ ..
T Consensus 331 ~~~~~SpDG~~Ia~~s~~----------~g~~~I~v~d~---~~g~~~~lt~~~-~~~~p~~spdg~~l~~~~~~~g-~~ 395 (427)
T PRK02889 331 TSPRISPDGKLLAYISRV----------GGAFKLYVQDL---ATGQVTALTDTT-RDESPSFAPNGRYILYATQQGG-RS 395 (427)
T ss_pred CceEECCCCCEEEEEEcc----------CCcEEEEEEEC---CCCCeEEccCCC-CccCceECCCCCEEEEEEecCC-CE
Confidence 357899999999987321 12347999996 666777776543 3467999999999999987664 36
Q ss_pred EEEEEcCCCC
Q 002209 482 RTWVISPGSK 491 (953)
Q Consensus 482 ~l~~~d~~~~ 491 (953)
.|+.+++++.
T Consensus 396 ~l~~~~~~g~ 405 (427)
T PRK02889 396 VLAAVSSDGR 405 (427)
T ss_pred EEEEEECCCC
Confidence 8999999763
No 13
>KOG2237 consensus Predicted serine protease [Posttranslational modification, protein turnover, chaperones]
Probab=99.89 E-value=7.4e-20 Score=197.74 Aligned_cols=290 Identities=20% Similarity=0.241 Sum_probs=211.6
Q ss_pred ccCCEEEEEEecCCCCceEEEEECCCCCe--eEEecCCCCCCCc--CCCceEEEEEEcCCCcEEEEEEEcCCCCCCCCCC
Q 002209 593 LNQLKILTSKESKTENTQYYIQSWPDKKS--CQITDFPHPYPQL--ASLQKELIKYQRKDGVQLSATLYLPPGYDPSKDG 668 (953)
Q Consensus 593 ~dg~~l~~~~~~~~~p~~l~~~~~~~g~~--~~Lt~~~~~~~~~--~~~~~~~~~~~~~dg~~~~~~l~~P~~~~~~~~~ 668 (953)
.+...+.|+.+++.+|+.||.+|+.+|+. ..+.+....++.+ ..+.++++++++.||.+|++.|+.-+.. +..+
T Consensus 391 ~~~~~~~f~~sS~l~P~~iy~yDl~~~~~e~~vf~e~~~~lpg~~~s~y~~~r~~~~SkDGt~VPM~Iv~kk~~--k~dg 468 (712)
T KOG2237|consen 391 FKSSTIRFQFSSFLTPGSIYDYDLANGKPEPSVFREITVVLPGFDASDYVVERIEVSSKDGTKVPMFIVYKKDI--KLDG 468 (712)
T ss_pred CCCceEEEEEeccCCCCeEEEeeccCCCCCCcceeeeccccCcccccceEEEEEEEecCCCCccceEEEEechh--hhcC
Confidence 34678999999999999999999998842 3344443434444 4568999999999999999999985432 2234
Q ss_pred CccEEEEeCCCCCcCcCCCCcccCCCCCCCCccchHHHHHHHcCcEEEEcCCCCCCCCCChhhhhhh---HHHHHHHHHH
Q 002209 669 PLPCLFWSYPGEFKSKDAAGQVRGSPNEFPRIGSTSVLLWLARGFAILGGPTTPIIGEGDEEANDRF---VEQLVACAEA 745 (953)
Q Consensus 669 ~~P~vv~~hGg~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~G~~V~~~~~~~~~G~G~~~~~~~~---~~~~~~D~~~ 745 (953)
+.|++|+.||++..+.+++ |.. ....|..+|++....+.||..++|..++.... -.+-+.|.++
T Consensus 469 ~~P~LLygYGay~isl~p~---------f~~----srl~lld~G~Vla~a~VRGGGe~G~~WHk~G~lakKqN~f~Dfia 535 (712)
T KOG2237|consen 469 SKPLLLYGYGAYGISLDPS---------FRA----SRLSLLDRGWVLAYANVRGGGEYGEQWHKDGRLAKKQNSFDDFIA 535 (712)
T ss_pred CCceEEEEecccceeeccc---------ccc----ceeEEEecceEEEEEeeccCcccccchhhccchhhhcccHHHHHH
Confidence 6899999999875554432 211 12356779998888888888888888764321 2356899999
Q ss_pred HHHHHHHcCCCCCCcEEEEEeChHHHHHHHHHHhCCCcccEEEEcccCCCCCCCC----cCcccccchhhhh---HHHHH
Q 002209 746 AVEEVVRRGVAHPSKIAVGGHSYGAFMTANLLAHAPHLFCCGIARSGAYNRTLTP----FGFQNEDRTLWEA---TSTYV 818 (953)
Q Consensus 746 ~~~~l~~~~~~d~~~i~l~G~S~GG~~a~~~a~~~p~~~~a~v~~~~~~d~~~~~----~~~~~~~~~~~~~---~~~~~ 818 (953)
+++||.+++++.++++++.|.|.||.++..++.++|++|+|+|+..|+.|...+. ...+.....-|.+ .+.+.
T Consensus 536 ~AeyLve~gyt~~~kL~i~G~SaGGlLvga~iN~rPdLF~avia~VpfmDvL~t~~~tilplt~sd~ee~g~p~~~~~~~ 615 (712)
T KOG2237|consen 536 CAEYLVENGYTQPSKLAIEGGSAGGLLVGACINQRPDLFGAVIAKVPFMDVLNTHKDTILPLTTSDYEEWGNPEDFEDLI 615 (712)
T ss_pred HHHHHHHcCCCCccceeEecccCccchhHHHhccCchHhhhhhhcCcceehhhhhccCccccchhhhcccCChhhhhhhh
Confidence 9999999999999999999999999999999999999999999999998843221 1111111122322 33445
Q ss_pred hcCcccccCCCC-----CcEEEEEeCCCCCCCCchHHHHHHHHHHHhC-------CCcEEEEEeCCCCccCCCccc-HHH
Q 002209 819 EMSPFMSANKLK-----KPILLVHGEEDNNSGTLTMQSDRFFNALKGH-------GALCRLVILPFESHGYAARES-IMH 885 (953)
Q Consensus 819 ~~sp~~~~~~i~-----~P~Li~~G~~D~~v~~~~~~~~~~~~~l~~~-------g~~~~~~~~~~~~H~~~~~~~-~~~ 885 (953)
.++|+..+++++ .-+||..+.+|.+|+ +.++.++.++|+.. ..++-+.+..++||+...... ..+
T Consensus 616 ~i~~y~pv~~i~~q~~YPS~lvtta~hD~RV~--~~~~~K~vAklre~~~~~~~q~~pvll~i~~~agH~~~~~~~k~~~ 693 (712)
T KOG2237|consen 616 KISPYSPVDNIKKQVQYPSMLVTTADHDDRVG--PLESLKWVAKLREATCDSLKQTNPVLLRIETKAGHGAEKPRFKQIE 693 (712)
T ss_pred eecccCccCCCchhccCcceEEeeccCCCccc--ccchHHHHHHHHHHhhcchhcCCCEEEEEecCCccccCCchHHHHH
Confidence 566666666553 358999999999998 99999999999864 145778889999998643221 223
Q ss_pred HHHHHHHHHHHhcc
Q 002209 886 VLWETDRWLQKYCV 899 (953)
Q Consensus 886 ~~~~i~~fl~~~l~ 899 (953)
....+++||.+.+.
T Consensus 694 E~a~~yaFl~K~~~ 707 (712)
T KOG2237|consen 694 EAAFRYAFLAKMLN 707 (712)
T ss_pred HHHHHHHHHHHHhc
Confidence 34456778777653
No 14
>PRK04792 tolB translocation protein TolB; Provisional
Probab=99.89 E-value=6e-21 Score=216.41 Aligned_cols=227 Identities=18% Similarity=0.141 Sum_probs=168.3
Q ss_pred ceEEEEccCCCCCCceeeeecCCCCCcccceEeccCCCeEEEEEeeccccCCCCcceEEEEECCCCceeecccCCCcccc
Q 002209 164 GIGIHQLFPDGKLGQEIEIQGFPDGAKLNFVTWSQDGKHLAFSIRIDAEDSSSSKLRVWVADVDTGKARPLFQSPDIYLN 243 (953)
Q Consensus 164 ~i~i~~~~~~g~~~~~~~l~~~~~~~~~~~~~wSPDG~~laf~~~~~~~~~~~~~~~l~~~d~~~g~~~~lt~~~~~~~~ 243 (953)
+||++|. +| ...+.|+.. ...+..|.|||||++|+|++. .++..+||++|+++|+.++++..+..
T Consensus 199 ~l~i~d~--dG--~~~~~l~~~--~~~~~~p~wSPDG~~La~~s~------~~g~~~L~~~dl~tg~~~~lt~~~g~--- 263 (448)
T PRK04792 199 QLMIADY--DG--YNEQMLLRS--PEPLMSPAWSPDGRKLAYVSF------ENRKAEIFVQDIYTQVREKVTSFPGI--- 263 (448)
T ss_pred EEEEEeC--CC--CCceEeecC--CCcccCceECCCCCEEEEEEe------cCCCcEEEEEECCCCCeEEecCCCCC---
Confidence 7899886 44 445566542 246889999999999999875 33568999999999998888765532
Q ss_pred ccccceEEecCCeEEEEEecCCCCCCCCCCCCCCCCceeecCCCccccchhhhhhcCCcchhhhhhhhccceEEEEEc-C
Q 002209 244 AIFDNFVWVNNSTLLVCTIPLLRGDPPKKPLVPLGPKMQSNEKRDIIQVRTFQDLLKDEYDEDLFDYYATTQLVLVSL-D 322 (953)
Q Consensus 244 ~~~~~~~wspDg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~l~~~~~-~ 322 (953)
...+.|||||+.|+|+... + +..+||++|+ +
T Consensus 264 --~~~~~wSPDG~~La~~~~~---------------------------------------~-------g~~~Iy~~dl~t 295 (448)
T PRK04792 264 --NGAPRFSPDGKKLALVLSK---------------------------------------D-------GQPEIYVVDIAT 295 (448)
T ss_pred --cCCeeECCCCCEEEEEEeC---------------------------------------C-------CCeEEEEEECCC
Confidence 3478999999999987210 0 3357999999 8
Q ss_pred CceeEeCCC-CcccccccCCCCcEEEEEEecCCccccccCCCCCcceEEEeccCceEEEeccCCCcccCCccccccccCc
Q 002209 323 GTVKEIGPP-AVYTSLDPSPDEKYILISSIHRPYSFIVPCGRFPRQVGVWTTDGIFVRELCDLPLAEDIPIAFNSVRKGM 401 (953)
Q Consensus 323 g~~~~l~~~-~~~~~~~~SpDG~~l~~~~~~~~~~~~~~~~~~~~~i~~~d~~g~~~~~l~~~~~~~~~p~~~~~~~~~~ 401 (953)
|+.++++.. .....++|||||++|+|++.... ..+||++++++++.+.++.... ..
T Consensus 296 g~~~~lt~~~~~~~~p~wSpDG~~I~f~s~~~g----------~~~Iy~~dl~~g~~~~Lt~~g~-------------~~ 352 (448)
T PRK04792 296 KALTRITRHRAIDTEPSWHPDGKSLIFTSERGG----------KPQIYRVNLASGKVSRLTFEGE-------------QN 352 (448)
T ss_pred CCeEECccCCCCccceEECCCCCEEEEEECCCC----------CceEEEEECCCCCEEEEecCCC-------------CC
Confidence 888888876 56678999999999999984421 2389999999888887764211 11
Q ss_pred cceeeccCCCCceEEEEeccCCCcccccccCCeEEEEecCCCCCCCceEEeecccccCCeeeccCCceEEEEEecccCce
Q 002209 402 RSINWRSDKPSTLYWAETQDGGDAKVEVTPRDIIYTQQAEPVQGEGPEILHKLDLRYGGISWCDDSLALVYESWYKTRRT 481 (953)
Q Consensus 402 ~~~~wspDg~~i~~~~~~~~~~~~~~~~~~~~~l~~~d~~~~~g~~~~~l~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~ 481 (953)
..++|||||+.|+|.... .....|+++++ ++++.+.++... ....+.|||||+.|+|....++ ..
T Consensus 353 ~~~~~SpDG~~l~~~~~~----------~g~~~I~~~dl---~~g~~~~lt~~~-~d~~ps~spdG~~I~~~~~~~g-~~ 417 (448)
T PRK04792 353 LGGSITPDGRSMIMVNRT----------NGKFNIARQDL---ETGAMQVLTSTR-LDESPSVAPNGTMVIYSTTYQG-KQ 417 (448)
T ss_pred cCeeECCCCCEEEEEEec----------CCceEEEEEEC---CCCCeEEccCCC-CCCCceECCCCCEEEEEEecCC-ce
Confidence 347899999998887321 22347889986 667777776543 3356899999999999887654 35
Q ss_pred EEEEEcCCCC
Q 002209 482 RTWVISPGSK 491 (953)
Q Consensus 482 ~l~~~d~~~~ 491 (953)
.||.++.++.
T Consensus 418 ~l~~~~~~G~ 427 (448)
T PRK04792 418 VLAAVSIDGR 427 (448)
T ss_pred EEEEEECCCC
Confidence 7999998764
No 15
>PRK05137 tolB translocation protein TolB; Provisional
Probab=99.89 E-value=5.5e-21 Score=217.56 Aligned_cols=254 Identities=14% Similarity=0.149 Sum_probs=185.3
Q ss_pred CCeEEEEEeeccccCCCCcceEEEEECCCCceeecccCCCccccccccceEEecCCeEEEEEecCCCCCCCCCCCCCCCC
Q 002209 200 GKHLAFSIRIDAEDSSSSKLRVWVADVDTGKARPLFQSPDIYLNAIFDNFVWVNNSTLLVCTIPLLRGDPPKKPLVPLGP 279 (953)
Q Consensus 200 G~~laf~~~~~~~~~~~~~~~l~~~d~~~g~~~~lt~~~~~~~~~~~~~~~wspDg~~l~~~~~~~~~~~~~~~~~~~~~ 279 (953)
+.+|||+.... .......+||++|.+|+..++++..... +..+.|||||+.|+|...
T Consensus 165 ~~~iafv~~~~--~~~~~~~~l~~~d~dg~~~~~lt~~~~~-----v~~p~wSpDG~~lay~s~---------------- 221 (435)
T PRK05137 165 DTRIVYVAESG--PKNKRIKRLAIMDQDGANVRYLTDGSSL-----VLTPRFSPNRQEITYMSY---------------- 221 (435)
T ss_pred CCeEEEEEeeC--CCCCcceEEEEECCCCCCcEEEecCCCC-----eEeeEECCCCCEEEEEEe----------------
Confidence 45899987632 0111267999999999988999876543 668999999999998821
Q ss_pred ceeecCCCccccchhhhhhcCCcchhhhhhhhccceEEEEEc-CCceeEeCCC-CcccccccCCCCcEEEEEEecCCccc
Q 002209 280 KMQSNEKRDIIQVRTFQDLLKDEYDEDLFDYYATTQLVLVSL-DGTVKEIGPP-AVYTSLDPSPDEKYILISSIHRPYSF 357 (953)
Q Consensus 280 ~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~l~~~~~-~g~~~~l~~~-~~~~~~~~SpDG~~l~~~~~~~~~~~ 357 (953)
.. +..+||++++ +|+.++++.. +....++|||||++|+|+....
T Consensus 222 ----------------------~~--------g~~~i~~~dl~~g~~~~l~~~~g~~~~~~~SPDG~~la~~~~~~---- 267 (435)
T PRK05137 222 ----------------------AN--------GRPRVYLLDLETGQRELVGNFPGMTFAPRFSPDGRKVVMSLSQG---- 267 (435)
T ss_pred ----------------------cC--------CCCEEEEEECCCCcEEEeecCCCcccCcEECCCCCEEEEEEecC----
Confidence 10 3368999999 8888888765 6677899999999999987432
Q ss_pred cccCCCCCcceEEEeccCceEEEeccCCCcccCCccccccccCccceeeccCCCCceEEEEeccCCCcccccccCCeEEE
Q 002209 358 IVPCGRFPRQVGVWTTDGIFVRELCDLPLAEDIPIAFNSVRKGMRSINWRSDKPSTLYWAETQDGGDAKVEVTPRDIIYT 437 (953)
Q Consensus 358 ~~~~~~~~~~i~~~d~~g~~~~~l~~~~~~~~~p~~~~~~~~~~~~~~wspDg~~i~~~~~~~~~~~~~~~~~~~~~l~~ 437 (953)
...+||++|++++..++|+..+.. ...+.|||||+.|+|..+. .+..+||+
T Consensus 268 ------g~~~Iy~~d~~~~~~~~Lt~~~~~-------------~~~~~~spDG~~i~f~s~~----------~g~~~Iy~ 318 (435)
T PRK05137 268 ------GNTDIYTMDLRSGTTTRLTDSPAI-------------DTSPSYSPDGSQIVFESDR----------SGSPQLYV 318 (435)
T ss_pred ------CCceEEEEECCCCceEEccCCCCc-------------cCceeEcCCCCEEEEEECC----------CCCCeEEE
Confidence 123799999999888888875422 2458899999999987422 22458999
Q ss_pred EecCCCCCCCceEEeecccccCCeeeccCCceEEEEEecccCceEEEEEcCCCCCCCcEEeecCCCccccCCCCCCCeEe
Q 002209 438 QQAEPVQGEGPEILHKLDLRYGGISWCDDSLALVYESWYKTRRTRTWVISPGSKDVAPRILFDRSSEDVYSDPGSPMMRR 517 (953)
Q Consensus 438 ~d~~~~~g~~~~~l~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~ 517 (953)
+++ ++++.+.++........+.|||||++|+|.....+ ..+|++++++++ ..+.++... .. .. ++|
T Consensus 319 ~d~---~g~~~~~lt~~~~~~~~~~~SpdG~~ia~~~~~~~-~~~i~~~d~~~~--~~~~lt~~~--~~----~~--p~~ 384 (435)
T PRK05137 319 MNA---DGSNPRRISFGGGRYSTPVWSPRGDLIAFTKQGGG-QFSIGVMKPDGS--GERILTSGF--LV----EG--PTW 384 (435)
T ss_pred EEC---CCCCeEEeecCCCcccCeEECCCCCEEEEEEcCCC-ceEEEEEECCCC--ceEeccCCC--CC----CC--CeE
Confidence 996 77778888776666677999999999999875443 358999998774 334444321 11 12 679
Q ss_pred ccCCCEEEEEeeeccCCCcEEEEecCCCCCCCCCCeEEEEECCCCceEEEe
Q 002209 518 TSTGTYVIAKIKKENDEGTYILLNGNGATPEGNIPFLDLFDINTGSKERIW 568 (953)
Q Consensus 518 SpDG~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~d~~~~~~~~l~ 568 (953)
||||++|+|.....+ . . ....||++|+++++.++|.
T Consensus 385 spDG~~i~~~~~~~~------------~--~-~~~~L~~~dl~g~~~~~l~ 420 (435)
T PRK05137 385 APNGRVIMFFRQTPG------------S--G-GAPKLYTVDLTGRNEREVP 420 (435)
T ss_pred CCCCCEEEEEEccCC------------C--C-CcceEEEEECCCCceEEcc
Confidence 999999999874221 0 0 0246999999988887765
No 16
>PRK03629 tolB translocation protein TolB; Provisional
Probab=99.88 E-value=8.1e-21 Score=214.64 Aligned_cols=253 Identities=16% Similarity=0.165 Sum_probs=185.1
Q ss_pred CeEEEEEeeccccCCCCcceEEEEECCCCceeecccCCCccccccccceEEecCCeEEEEEecCCCCCCCCCCCCCCCCc
Q 002209 201 KHLAFSIRIDAEDSSSSKLRVWVADVDTGKARPLFQSPDIYLNAIFDNFVWVNNSTLLVCTIPLLRGDPPKKPLVPLGPK 280 (953)
Q Consensus 201 ~~laf~~~~~~~~~~~~~~~l~~~d~~~g~~~~lt~~~~~~~~~~~~~~~wspDg~~l~~~~~~~~~~~~~~~~~~~~~~ 280 (953)
++|||+.... ++....+||++|.+|+..++++..... +..+.|||||+.|+|....
T Consensus 164 ~riayv~~~~---~~~~~~~l~~~d~dg~~~~~lt~~~~~-----~~~p~wSPDG~~la~~s~~---------------- 219 (429)
T PRK03629 164 TRIAYVVQTN---GGQFPYELRVSDYDGYNQFVVHRSPQP-----LMSPAWSPDGSKLAYVTFE---------------- 219 (429)
T ss_pred CeEEEEEeeC---CCCcceeEEEEcCCCCCCEEeecCCCc-----eeeeEEcCCCCEEEEEEec----------------
Confidence 6899987633 133467999999999888889876542 5689999999999987210
Q ss_pred eeecCCCccccchhhhhhcCCcchhhhhhhhccceEEEEEc-CCceeEeCCC-CcccccccCCCCcEEEEEEecCCcccc
Q 002209 281 MQSNEKRDIIQVRTFQDLLKDEYDEDLFDYYATTQLVLVSL-DGTVKEIGPP-AVYTSLDPSPDEKYILISSIHRPYSFI 358 (953)
Q Consensus 281 ~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~l~~~~~-~g~~~~l~~~-~~~~~~~~SpDG~~l~~~~~~~~~~~~ 358 (953)
+ +..+||++++ +|+.+.++.. +....+.|||||++|+|+....
T Consensus 220 -----------------------~-------g~~~i~i~dl~~G~~~~l~~~~~~~~~~~~SPDG~~La~~~~~~----- 264 (429)
T PRK03629 220 -----------------------S-------GRSALVIQTLANGAVRQVASFPRHNGAPAFSPDGSKLAFALSKT----- 264 (429)
T ss_pred -----------------------C-------CCcEEEEEECCCCCeEEccCCCCCcCCeEECCCCCEEEEEEcCC-----
Confidence 0 3357999999 8888888765 5667899999999999986332
Q ss_pred ccCCCCCcceEEEeccCceEEEeccCCCcccCCccccccccCccceeeccCCCCceEEEEeccCCCcccccccCCeEEEE
Q 002209 359 VPCGRFPRQVGVWTTDGIFVRELCDLPLAEDIPIAFNSVRKGMRSINWRSDKPSTLYWAETQDGGDAKVEVTPRDIIYTQ 438 (953)
Q Consensus 359 ~~~~~~~~~i~~~d~~g~~~~~l~~~~~~~~~p~~~~~~~~~~~~~~wspDg~~i~~~~~~~~~~~~~~~~~~~~~l~~~ 438 (953)
...+||+||++++..++++.... ....+.|||||+.|+|..+. .+..+||++
T Consensus 265 -----g~~~I~~~d~~tg~~~~lt~~~~-------------~~~~~~wSPDG~~I~f~s~~----------~g~~~Iy~~ 316 (429)
T PRK03629 265 -----GSLNLYVMDLASGQIRQVTDGRS-------------NNTEPTWFPDSQNLAYTSDQ----------AGRPQVYKV 316 (429)
T ss_pred -----CCcEEEEEECCCCCEEEccCCCC-------------CcCceEECCCCCEEEEEeCC----------CCCceEEEE
Confidence 12379999999888888876432 12468899999999998322 223489999
Q ss_pred ecCCCCCCCceEEeecccccCCeeeccCCceEEEEEecccCceEEEEEcCCCCCCCcEEeecCCCccccCCCCCCCeEec
Q 002209 439 QAEPVQGEGPEILHKLDLRYGGISWCDDSLALVYESWYKTRRTRTWVISPGSKDVAPRILFDRSSEDVYSDPGSPMMRRT 518 (953)
Q Consensus 439 d~~~~~g~~~~~l~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~S 518 (953)
++ ++++.++++........+.|||||++|+|....++ ...||+++++++ +.+.++... .+ .+ ++||
T Consensus 317 d~---~~g~~~~lt~~~~~~~~~~~SpDG~~Ia~~~~~~g-~~~I~~~dl~~g--~~~~Lt~~~-~~-----~~--p~~S 382 (429)
T PRK03629 317 NI---NGGAPQRITWEGSQNQDADVSSDGKFMVMVSSNGG-QQHIAKQDLATG--GVQVLTDTF-LD-----ET--PSIA 382 (429)
T ss_pred EC---CCCCeEEeecCCCCccCEEECCCCCEEEEEEccCC-CceEEEEECCCC--CeEEeCCCC-CC-----CC--ceEC
Confidence 86 66777777665555567999999999999876543 357999999885 455555321 11 12 5699
Q ss_pred cCCCEEEEEeeeccCCCcEEEEecCCCCCCCCCCeEEEEECCCCceEEEeccCc
Q 002209 519 STGTYVIAKIKKENDEGTYILLNGNGATPEGNIPFLDLFDINTGSKERIWESDK 572 (953)
Q Consensus 519 pDG~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~d~~~~~~~~l~~~~~ 572 (953)
|||++|+|...+. ....|++++++++..++|...++
T Consensus 383 pDG~~i~~~s~~~------------------~~~~l~~~~~~G~~~~~l~~~~~ 418 (429)
T PRK03629 383 PNGTMVIYSSSQG------------------MGSVLNLVSTDGRFKARLPATDG 418 (429)
T ss_pred CCCCEEEEEEcCC------------------CceEEEEEECCCCCeEECccCCC
Confidence 9999999987432 13358999998888888765443
No 17
>COG4946 Uncharacterized protein related to the periplasmic component of the Tol biopolymer transport system [Function unknown]
Probab=99.88 E-value=2.2e-20 Score=192.22 Aligned_cols=388 Identities=16% Similarity=0.153 Sum_probs=232.0
Q ss_pred eecCC--CCEEEEEecCCCCCccccccccceeceEEecCCCCCCcceeeeeceEEEEccCCCCCCceeeeecCCCCCccc
Q 002209 115 SFSPQ--RDKILFLKRRALPPLEELARPEEKLAGLRIDGKCNTRSRMSFYTGIGIHQLFPDGKLGQEIEIQGFPDGAKLN 192 (953)
Q Consensus 115 ~~SPD--G~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~i~~~~~~g~~~~~~~l~~~~~~~~~~ 192 (953)
-.-|| |.+|.|+..+ +||.+++.+ ++.++||+. -+.+.
T Consensus 43 ~l~PDI~GD~IiFt~~D----------------------------------dlWe~slk~----g~~~ritS~--lGVvn 82 (668)
T COG4946 43 YLNPDIYGDRIIFTCCD----------------------------------DLWEYSLKD----GKPLRITSG--LGVVN 82 (668)
T ss_pred hcCCcccCcEEEEEech----------------------------------HHHHhhhcc----CCeeEEecc--cceec
Confidence 34565 8999999986 889998865 667777742 24789
Q ss_pred ceEeccCCCeEEEEEeeccccCCCCcceEEEEECCCCceeecccCCCccccccccceEEecCCeEEEEEecCCCCC---C
Q 002209 193 FVTWSQDGKHLAFSIRIDAEDSSSSKLRVWVADVDTGKARPLFQSPDIYLNAIFDNFVWVNNSTLLVCTIPLLRGD---P 269 (953)
Q Consensus 193 ~~~wSPDG~~laf~~~~~~~~~~~~~~~l~~~d~~~g~~~~lt~~~~~~~~~~~~~~~wspDg~~l~~~~~~~~~~---~ 269 (953)
.|.+||||++|||++-- ....-...+||+++.++|+++++|..+.. . ..-..|+|||+.|+++..-..-. .
T Consensus 83 n~kf~pdGrkvaf~rv~--~~ss~~taDly~v~~e~Ge~kRiTyfGr~-f---T~VaG~~~dg~iiV~TD~~tPF~q~~~ 156 (668)
T COG4946 83 NPKFSPDGRKVAFSRVM--LGSSLQTADLYVVPSEDGEAKRITYFGRR-F---TRVAGWIPDGEIIVSTDFHTPFSQWTE 156 (668)
T ss_pred cccCCCCCcEEEEEEEE--ecCCCccccEEEEeCCCCcEEEEEEeccc-c---ceeeccCCCCCEEEEeccCCCccccee
Confidence 99999999999995531 12233467999999999999999988532 1 23456999999999771110000 0
Q ss_pred --------CCCCCCCCCCceee--cCCCccccchhhhhhcCC-------------cchh---------------------
Q 002209 270 --------PKKPLVPLGPKMQS--NEKRDIIQVRTFQDLLKD-------------EYDE--------------------- 305 (953)
Q Consensus 270 --------~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~-------------~~d~--------------------- 305 (953)
......+.||...- .++ .+.-.|...|+--. +.|+
T Consensus 157 lYkv~~dg~~~e~LnlGpathiv~~dg-~ivigRntydLP~WK~YkGGtrGklWis~d~g~tFeK~vdl~~~vS~PmIV~ 235 (668)
T COG4946 157 LYKVNVDGIKTEPLNLGPATHIVIKDG-IIVIGRNTYDLPHWKGYKGGTRGKLWISSDGGKTFEKFVDLDGNVSSPMIVG 235 (668)
T ss_pred eeEEccCCceeeeccCCceeeEEEeCC-EEEEccCcccCcccccccCCccceEEEEecCCcceeeeeecCCCcCCceEEc
Confidence 00111122222110 010 00001110000000 0000
Q ss_pred -h---hhhhhccceEEEEEcCC-ceeEeCCCCcccccccCCCCcEEEEEEecCCccccccCCCCCcceEEEeccCceEEE
Q 002209 306 -D---LFDYYATTQLVLVSLDG-TVKEIGPPAVYTSLDPSPDEKYILISSIHRPYSFIVPCGRFPRQVGVWTTDGIFVRE 380 (953)
Q Consensus 306 -~---~~~~~~~~~l~~~~~~g-~~~~l~~~~~~~~~~~SpDG~~l~~~~~~~~~~~~~~~~~~~~~i~~~d~~g~~~~~ 380 (953)
. +.++.+.++||.+|++| ..++-|+...+..-..+.|||+|+|+. .++||++|.++..++.
T Consensus 236 ~RvYFlsD~eG~GnlYSvdldGkDlrrHTnFtdYY~R~~nsDGkrIvFq~--------------~GdIylydP~td~lek 301 (668)
T COG4946 236 ERVYFLSDHEGVGNLYSVDLDGKDLRRHTNFTDYYPRNANSDGKRIVFQN--------------AGDIYLYDPETDSLEK 301 (668)
T ss_pred ceEEEEecccCccceEEeccCCchhhhcCCchhccccccCCCCcEEEEec--------------CCcEEEeCCCcCccee
Confidence 0 01222668899999955 566666653333345678999999997 3489999998777666
Q ss_pred eccC-CCc--ccCCccccccccCccceeeccCCCCceEEEE-------ec--------------------cCCCcccccc
Q 002209 381 LCDL-PLA--EDIPIAFNSVRKGMRSINWRSDKPSTLYWAE-------TQ--------------------DGGDAKVEVT 430 (953)
Q Consensus 381 l~~~-~~~--~~~p~~~~~~~~~~~~~~wspDg~~i~~~~~-------~~--------------------~~~~~~~~~~ 430 (953)
|.-. |.. ..++...+.+ .-...++. .+|..|++... .. ++...-.-..
T Consensus 302 ldI~lpl~rk~k~~k~~~ps-kyledfa~-~~Gd~ia~VSRGkaFi~~~~~~~~iqv~~~~~VrY~r~~~~~e~~vigt~ 379 (668)
T COG4946 302 LDIGLPLDRKKKQPKFVNPS-KYLEDFAV-VNGDYIALVSRGKAFIMRPWDGYSIQVGKKGGVRYRRIQVDPEGDVIGTN 379 (668)
T ss_pred eecCCccccccccccccCHH-Hhhhhhcc-CCCcEEEEEecCcEEEECCCCCeeEEcCCCCceEEEEEccCCcceEEecc
Confidence 5433 332 1222211100 00000000 12332322211 00 1110001112
Q ss_pred cCCeEEEEecCCCCCCCceEEeecccccCCeeeccCCceEEEEEecccCceEEEEEcCCCCCCCcEEeecCCCccccCCC
Q 002209 431 PRDIIYTQQAEPVQGEGPEILHKLDLRYGGISWCDDSLALVYESWYKTRRTRTWVISPGSKDVAPRILFDRSSEDVYSDP 510 (953)
Q Consensus 431 ~~~~l~~~d~~~~~g~~~~~l~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~ 510 (953)
..+.+-+++. .+++.+.+...-+.+..+..|+||+.++.+.+ +.+||++|.+++ +++.+......-+..
T Consensus 380 dgD~l~iyd~---~~~e~kr~e~~lg~I~av~vs~dGK~~vvaNd----r~el~vididng--nv~~idkS~~~lItd-- 448 (668)
T COG4946 380 DGDKLGIYDK---DGGEVKRIEKDLGNIEAVKVSPDGKKVVVAND----RFELWVIDIDNG--NVRLIDKSEYGLITD-- 448 (668)
T ss_pred CCceEEEEec---CCceEEEeeCCccceEEEEEcCCCcEEEEEcC----ceEEEEEEecCC--CeeEecccccceeEE--
Confidence 2346777775 77888888888888899999999999888743 248999999996 445444333332222
Q ss_pred CCCCeEeccCCCEEEEEeeeccCCCcEEEEecCCCCCCCCCCeEEEEECCCCceEEEeccCcccceeeeEeeccCCcccc
Q 002209 511 GSPMMRRTSTGTYVIAKIKKENDEGTYILLNGNGATPEGNIPFLDLFDINTGSKERIWESDKEKYYETTVALMSDQTEGD 590 (953)
Q Consensus 511 ~~p~~~~SpDG~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~d~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~ 590 (953)
+.|+|+++|+||..-. +|+ ..+|.++|+.+++...+|..... +-.++
T Consensus 449 ----f~~~~nsr~iAYafP~-----gy~------------tq~Iklydm~~~Kiy~vTT~ta~------------DfsPa 495 (668)
T COG4946 449 ----FDWHPNSRWIAYAFPE-----GYY------------TQSIKLYDMDGGKIYDVTTPTAY------------DFSPA 495 (668)
T ss_pred ----EEEcCCceeEEEecCc-----cee------------eeeEEEEecCCCeEEEecCCccc------------ccCcc
Confidence 7899999999999731 111 34699999999999888876642 34589
Q ss_pred ccccCCEEEEEEecCCCCc
Q 002209 591 LYLNQLKILTSKESKTENT 609 (953)
Q Consensus 591 ~s~dg~~l~~~~~~~~~p~ 609 (953)
|+|||++|+|.....-.|.
T Consensus 496 FD~d~ryLYfLs~RsLdPs 514 (668)
T COG4946 496 FDPDGRYLYFLSARSLDPS 514 (668)
T ss_pred cCCCCcEEEEEeccccCCC
Confidence 9999999999776655553
No 18
>PRK04922 tolB translocation protein TolB; Provisional
Probab=99.88 E-value=5.7e-21 Score=217.10 Aligned_cols=234 Identities=15% Similarity=0.109 Sum_probs=172.0
Q ss_pred eceEEEEccCCCCCCceeeeecCCCCCcccceEeccCCCeEEEEEeeccccCCCCcceEEEEECCCCceeecccCCCccc
Q 002209 163 TGIGIHQLFPDGKLGQEIEIQGFPDGAKLNFVTWSQDGKHLAFSIRIDAEDSSSSKLRVWVADVDTGKARPLFQSPDIYL 242 (953)
Q Consensus 163 ~~i~i~~~~~~g~~~~~~~l~~~~~~~~~~~~~wSPDG~~laf~~~~~~~~~~~~~~~l~~~d~~~g~~~~lt~~~~~~~ 242 (953)
.+||++|. +| ...++|+.. +..+..|+|||||++|+|++. ..+..+||++++++|+.++++..+..
T Consensus 184 ~~l~i~D~--~g--~~~~~lt~~--~~~v~~p~wSpDg~~la~~s~------~~~~~~l~~~dl~~g~~~~l~~~~g~-- 249 (433)
T PRK04922 184 YALQVADS--DG--YNPQTILRS--AEPILSPAWSPDGKKLAYVSF------ERGRSAIYVQDLATGQRELVASFRGI-- 249 (433)
T ss_pred EEEEEECC--CC--CCceEeecC--CCccccccCCCCCCEEEEEec------CCCCcEEEEEECCCCCEEEeccCCCC--
Confidence 37899997 34 445666542 246889999999999999864 33567899999999998888765432
Q ss_pred cccccceEEecCCeEEEEEecCCCCCCCCCCCCCCCCceeecCCCccccchhhhhhcCCcchhhhhhhhccceEEEEEc-
Q 002209 243 NAIFDNFVWVNNSTLLVCTIPLLRGDPPKKPLVPLGPKMQSNEKRDIIQVRTFQDLLKDEYDEDLFDYYATTQLVLVSL- 321 (953)
Q Consensus 243 ~~~~~~~~wspDg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~l~~~~~- 321 (953)
...+.|||||+.|+|+... + +..+||++++
T Consensus 250 ---~~~~~~SpDG~~l~~~~s~---------------------------------------~-------g~~~Iy~~d~~ 280 (433)
T PRK04922 250 ---NGAPSFSPDGRRLALTLSR---------------------------------------D-------GNPEIYVMDLG 280 (433)
T ss_pred ---ccCceECCCCCEEEEEEeC---------------------------------------C-------CCceEEEEECC
Confidence 4478999999999887210 0 3357999999
Q ss_pred CCceeEeCCC-CcccccccCCCCcEEEEEEecCCccccccCCCCCcceEEEeccCceEEEeccCCCcccCCccccccccC
Q 002209 322 DGTVKEIGPP-AVYTSLDPSPDEKYILISSIHRPYSFIVPCGRFPRQVGVWTTDGIFVRELCDLPLAEDIPIAFNSVRKG 400 (953)
Q Consensus 322 ~g~~~~l~~~-~~~~~~~~SpDG~~l~~~~~~~~~~~~~~~~~~~~~i~~~d~~g~~~~~l~~~~~~~~~p~~~~~~~~~ 400 (953)
+|+.++++.. .....++|||||++|+|++.+.. ..+||+++++++..++++.... .
T Consensus 281 ~g~~~~lt~~~~~~~~~~~spDG~~l~f~sd~~g----------~~~iy~~dl~~g~~~~lt~~g~-------------~ 337 (433)
T PRK04922 281 SRQLTRLTNHFGIDTEPTWAPDGKSIYFTSDRGG----------RPQIYRVAASGGSAERLTFQGN-------------Y 337 (433)
T ss_pred CCCeEECccCCCCccceEECCCCCEEEEEECCCC----------CceEEEEECCCCCeEEeecCCC-------------C
Confidence 8888888876 55578999999999999985421 1279999998887777764221 1
Q ss_pred ccceeeccCCCCceEEEEeccCCCcccccccCCeEEEEecCCCCCCCceEEeecccccCCeeeccCCceEEEEEecccCc
Q 002209 401 MRSINWRSDKPSTLYWAETQDGGDAKVEVTPRDIIYTQQAEPVQGEGPEILHKLDLRYGGISWCDDSLALVYESWYKTRR 480 (953)
Q Consensus 401 ~~~~~wspDg~~i~~~~~~~~~~~~~~~~~~~~~l~~~d~~~~~g~~~~~l~~~~~~~~~~~~SpDg~~l~~~~~~~~~~ 480 (953)
...++|||||+.|+|... + +....|+++++ .+++.+.++... ....+.|||||+.|+|..... +.
T Consensus 338 ~~~~~~SpDG~~Ia~~~~--~--------~~~~~I~v~d~---~~g~~~~Lt~~~-~~~~p~~spdG~~i~~~s~~~-g~ 402 (433)
T PRK04922 338 NARASVSPDGKKIAMVHG--S--------GGQYRIAVMDL---STGSVRTLTPGS-LDESPSFAPNGSMVLYATREG-GR 402 (433)
T ss_pred ccCEEECCCCCEEEEEEC--C--------CCceeEEEEEC---CCCCeEECCCCC-CCCCceECCCCCEEEEEEecC-Cc
Confidence 235889999999998722 1 12347899996 667777776544 346789999999999988764 34
Q ss_pred eEEEEEcCCCCCCCcEEee
Q 002209 481 TRTWVISPGSKDVAPRILF 499 (953)
Q Consensus 481 ~~l~~~d~~~~~~~~~~~~ 499 (953)
..||.++++++ ....+.
T Consensus 403 ~~L~~~~~~g~--~~~~l~ 419 (433)
T PRK04922 403 GVLAAVSTDGR--VRQRLV 419 (433)
T ss_pred eEEEEEECCCC--ceEEcc
Confidence 68999999774 334443
No 19
>KOG0293 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.88 E-value=4.6e-23 Score=208.53 Aligned_cols=355 Identities=16% Similarity=0.122 Sum_probs=226.5
Q ss_pred cccccccCCCCCCCchhhhcccCCCCCcccccccceecccccccccccccccccccCCCCCCCccccccccccccccccc
Q 002209 13 HRGVSLLTPSSLSPPIFLCLKLGRVPGHLRTHSIKTTTAMTASRLHHLVPIHSVSSKNDGTNGSLSSSNAVATEDEDNLE 92 (953)
Q Consensus 13 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 92 (953)
.|..+|.+|+.++||. .++|++||++|+.+|.--+...|.+|+...+ .++..|+.|..
T Consensus 152 ~R~~ll~elskyi~p~---------------------illP~rRLehLl~qAv~~Q~d~cvyhnslds-vsll~Dh~c~~ 209 (519)
T KOG0293|consen 152 ERDKLLDELSKYIPPN---------------------ILLPKRRLEHLLEQAVKYQRDSCVYHNSLDS-VSLLSDHFCGR 209 (519)
T ss_pred hHHHHHHHHHhhCCHh---------------------hcCChHHHHHHHHHHHHHHHhHhHHhcccch-hhhhhhcccCc
Confidence 3889999999999999 8899999999999999999999998886655 57788898887
Q ss_pred CCcCCCchhHHHhhcCCCCCCceecCCCCEEEEEecCCCCCccccccccceeceEEecCCCCCCcceeeeeceEEEEccC
Q 002209 93 GRYRLPPPEIREIVDAPPLPALSFSPQRDKILFLKRRALPPLEELARPEEKLAGLRIDGKCNTRSRMSFYTGIGIHQLFP 172 (953)
Q Consensus 93 ~~~~~~~~~~~~~~~~~~~~~~~~SPDG~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~i~~~~~ 172 (953)
.+.+.....+..-+.. +++.++|||+|++||.++.+ . ...||.+..
T Consensus 210 ~qip~qt~qil~~htd-EVWfl~FS~nGkyLAsaSkD-------------------------~--------Taiiw~v~~ 255 (519)
T KOG0293|consen 210 LQIPSQTWQILQDHTD-EVWFLQFSHNGKYLASASKD-------------------------S--------TAIIWIVVY 255 (519)
T ss_pred ccCCchhhhhHhhCCC-cEEEEEEcCCCeeEeeccCC-------------------------c--------eEEEEEEec
Confidence 6666655555444433 89999999999999999886 2 224555545
Q ss_pred CCCCCceeeeecCCCCCcccceEeccCCCeEEEEEeeccccCCCCcceEEEEECCCCceeecccCCCccccccccceEEe
Q 002209 173 DGKLGQEIEIQGFPDGAKLNFVTWSQDGKHLAFSIRIDAEDSSSSKLRVWVADVDTGKARPLFQSPDIYLNAIFDNFVWV 252 (953)
Q Consensus 173 ~g~~~~~~~l~~~~~~~~~~~~~wSPDG~~laf~~~~~~~~~~~~~~~l~~~d~~~g~~~~lt~~~~~~~~~~~~~~~ws 252 (953)
|+...-.+.+.++. ..+....||||.++|+.+.. ...++++|+++|+.+.+.....+ ..+.+++|-
T Consensus 256 d~~~kl~~tlvgh~--~~V~yi~wSPDdryLlaCg~---------~e~~~lwDv~tgd~~~~y~~~~~---~S~~sc~W~ 321 (519)
T KOG0293|consen 256 DVHFKLKKTLVGHS--QPVSYIMWSPDDRYLLACGF---------DEVLSLWDVDTGDLRHLYPSGLG---FSVSSCAWC 321 (519)
T ss_pred Ccceeeeeeeeccc--CceEEEEECCCCCeEEecCc---------hHheeeccCCcchhhhhcccCcC---CCcceeEEc
Confidence 55322233443332 36899999999999998653 34599999999998877665521 126699999
Q ss_pred cCCeEEEEEecCCCCCCCCCCCCCCCCceeecCCCcc---ccch--hhhhhcCCcchhhhhhhhccceEEEEEc-CCcee
Q 002209 253 NNSTLLVCTIPLLRGDPPKKPLVPLGPKMQSNEKRDI---IQVR--TFQDLLKDEYDEDLFDYYATTQLVLVSL-DGTVK 326 (953)
Q Consensus 253 pDg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~--~~~~~~~~~~d~~~~~~~~~~~l~~~~~-~g~~~ 326 (953)
|||..++...++.... .++.++... .++| .+.|+.-+..+...+.+.....|..++. +...+
T Consensus 322 pDg~~~V~Gs~dr~i~------------~wdlDgn~~~~W~gvr~~~v~dlait~Dgk~vl~v~~d~~i~l~~~e~~~dr 389 (519)
T KOG0293|consen 322 PDGFRFVTGSPDRTII------------MWDLDGNILGNWEGVRDPKVHDLAITYDGKYVLLVTVDKKIRLYNREARVDR 389 (519)
T ss_pred cCCceeEecCCCCcEE------------EecCCcchhhcccccccceeEEEEEcCCCcEEEEEecccceeeechhhhhhh
Confidence 9999988775543221 122221111 0111 1122222222222233334456666776 44333
Q ss_pred -EeCCCCcccccccCCCCcEEEEEEecCCccccccCCCCCcceEEEeccCceEEEeccCCCcccCCccccccccCcccee
Q 002209 327 -EIGPPAVYTSLDPSPDEKYILISSIHRPYSFIVPCGRFPRQVGVWTTDGIFVRELCDLPLAEDIPIAFNSVRKGMRSIN 405 (953)
Q Consensus 327 -~l~~~~~~~~~~~SpDG~~l~~~~~~~~~~~~~~~~~~~~~i~~~d~~g~~~~~l~~~~~~~~~p~~~~~~~~~~~~~~ 405 (953)
.+++...++++.+|.|||++++.-.. .++++||++. .+.+....+....-+...++.+|
T Consensus 390 ~lise~~~its~~iS~d~k~~LvnL~~-------------qei~LWDl~e--~~lv~kY~Ghkq~~fiIrSCFgg----- 449 (519)
T KOG0293|consen 390 GLISEEQPITSFSISKDGKLALVNLQD-------------QEIHLWDLEE--NKLVRKYFGHKQGHFIIRSCFGG----- 449 (519)
T ss_pred ccccccCceeEEEEcCCCcEEEEEccc-------------CeeEEeecch--hhHHHHhhcccccceEEEeccCC-----
Confidence 44445788999999999988877633 4899999982 22222211110000000011111
Q ss_pred eccCCCCceEEEEeccCCCcccccccCCeEEEEecCCCCCCCceEEeecccccCCeeeccCCceEEEEEecccCceEEEE
Q 002209 406 WRSDKPSTLYWAETQDGGDAKVEVTPRDIIYTQQAEPVQGEGPEILHKLDLRYGGISWCDDSLALVYESWYKTRRTRTWV 485 (953)
Q Consensus 406 wspDg~~i~~~~~~~~~~~~~~~~~~~~~l~~~d~~~~~g~~~~~l~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~l~~ 485 (953)
-|.+ |. ..-++.++||+|+. ..|.-...|+++...++.++|+|.....+.++.+++ ..+||-
T Consensus 450 --~~~~---fi----------aSGSED~kvyIWhr--~sgkll~~LsGHs~~vNcVswNP~~p~m~ASasDDg-tIRIWg 511 (519)
T KOG0293|consen 450 --GNDK---FI----------ASGSEDSKVYIWHR--ISGKLLAVLSGHSKTVNCVSWNPADPEMFASASDDG-TIRIWG 511 (519)
T ss_pred --CCcc---eE----------EecCCCceEEEEEc--cCCceeEeecCCcceeeEEecCCCCHHHhhccCCCC-eEEEec
Confidence 0111 11 11156779999995 344445567888888999999999888666555443 247775
Q ss_pred Ec
Q 002209 486 IS 487 (953)
Q Consensus 486 ~d 487 (953)
.+
T Consensus 512 ~~ 513 (519)
T KOG0293|consen 512 PS 513 (519)
T ss_pred CC
Confidence 44
No 20
>PRK02889 tolB translocation protein TolB; Provisional
Probab=99.88 E-value=5.1e-21 Score=216.62 Aligned_cols=226 Identities=19% Similarity=0.229 Sum_probs=168.6
Q ss_pred CCCCceecCCCCEEEEEecCCCCCccccccccceeceEEecCCCCCCcceeeeeceEEEEccCCCCCCceeeeecCCCCC
Q 002209 110 PLPALSFSPQRDKILFLKRRALPPLEELARPEEKLAGLRIDGKCNTRSRMSFYTGIGIHQLFPDGKLGQEIEIQGFPDGA 189 (953)
Q Consensus 110 ~~~~~~~SPDG~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~i~~~~~~g~~~~~~~l~~~~~~~ 189 (953)
.+..++|||||++|+|++.. ++.. .||+||+.+ ++.++++..+ .
T Consensus 197 ~v~~p~wSPDG~~la~~s~~------------------------~~~~------~I~~~dl~~----g~~~~l~~~~--g 240 (427)
T PRK02889 197 PIISPAWSPDGTKLAYVSFE------------------------SKKP------VVYVHDLAT----GRRRVVANFK--G 240 (427)
T ss_pred CcccceEcCCCCEEEEEEcc------------------------CCCc------EEEEEECCC----CCEEEeecCC--C
Confidence 46689999999999998863 1222 689999954 5556666444 3
Q ss_pred cccceEeccCCCeEEEEEeeccccCCCCcceEEEEECCCCceeecccCCCccccccccceEEecCCeEEEEEecCCCCCC
Q 002209 190 KLNFVTWSQDGKHLAFSIRIDAEDSSSSKLRVWVADVDTGKARPLFQSPDIYLNAIFDNFVWVNNSTLLVCTIPLLRGDP 269 (953)
Q Consensus 190 ~~~~~~wSPDG~~laf~~~~~~~~~~~~~~~l~~~d~~~g~~~~lt~~~~~~~~~~~~~~~wspDg~~l~~~~~~~~~~~ 269 (953)
....|.|||||++|+|+.. .++..+||++|+++++.++++..... ...+.|||||+.|+|.+.
T Consensus 241 ~~~~~~~SPDG~~la~~~~------~~g~~~Iy~~d~~~~~~~~lt~~~~~-----~~~~~wSpDG~~l~f~s~------ 303 (427)
T PRK02889 241 SNSAPAWSPDGRTLAVALS------RDGNSQIYTVNADGSGLRRLTQSSGI-----DTEPFFSPDGRSIYFTSD------ 303 (427)
T ss_pred CccceEECCCCCEEEEEEc------cCCCceEEEEECCCCCcEECCCCCCC-----CcCeEEcCCCCEEEEEec------
Confidence 4678999999999999764 44678999999999988889875432 447899999999998721
Q ss_pred CCCCCCCCCCceeecCCCccccchhhhhhcCCcchhhhhhhhccceEEEEEc-CCceeEeCCC-CcccccccCCCCcEEE
Q 002209 270 PKKPLVPLGPKMQSNEKRDIIQVRTFQDLLKDEYDEDLFDYYATTQLVLVSL-DGTVKEIGPP-AVYTSLDPSPDEKYIL 347 (953)
Q Consensus 270 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~l~~~~~-~g~~~~l~~~-~~~~~~~~SpDG~~l~ 347 (953)
. + +..+||.+++ +++.++++.. .....++|||||++|+
T Consensus 304 --------------------------------~-~-------g~~~Iy~~~~~~g~~~~lt~~g~~~~~~~~SpDG~~Ia 343 (427)
T PRK02889 304 --------------------------------R-G-------GAPQIYRMPASGGAAQRVTFTGSYNTSPRISPDGKLLA 343 (427)
T ss_pred --------------------------------C-C-------CCcEEEEEECCCCceEEEecCCCCcCceEECCCCCEEE
Confidence 0 0 3357999998 7777777654 4456789999999999
Q ss_pred EEEecCCccccccCCCCCcceEEEeccCceEEEeccCCCcccCCccccccccCccceeeccCCCCceEEEEeccCCCccc
Q 002209 348 ISSIHRPYSFIVPCGRFPRQVGVWTTDGIFVRELCDLPLAEDIPIAFNSVRKGMRSINWRSDKPSTLYWAETQDGGDAKV 427 (953)
Q Consensus 348 ~~~~~~~~~~~~~~~~~~~~i~~~d~~g~~~~~l~~~~~~~~~p~~~~~~~~~~~~~~wspDg~~i~~~~~~~~~~~~~~ 427 (953)
|.+.... ..+|++||+++++.+.++... ....+.|||||+.|+|..+.
T Consensus 344 ~~s~~~g----------~~~I~v~d~~~g~~~~lt~~~--------------~~~~p~~spdg~~l~~~~~~-------- 391 (427)
T PRK02889 344 YISRVGG----------AFKLYVQDLATGQVTALTDTT--------------RDESPSFAPNGRYILYATQQ-------- 391 (427)
T ss_pred EEEccCC----------cEEEEEEECCCCCeEEccCCC--------------CccCceECCCCCEEEEEEec--------
Confidence 9874321 127999999988888776532 11467899999999998432
Q ss_pred ccccCCeEEEEecCCCCCCCceEEeecccccCCeeecc
Q 002209 428 EVTPRDIIYTQQAEPVQGEGPEILHKLDLRYGGISWCD 465 (953)
Q Consensus 428 ~~~~~~~l~~~d~~~~~g~~~~~l~~~~~~~~~~~~Sp 465 (953)
.++..++++++ +|...+.+....+.+..++|||
T Consensus 392 --~g~~~l~~~~~---~g~~~~~l~~~~g~~~~p~wsp 424 (427)
T PRK02889 392 --GGRSVLAAVSS---DGRIKQRLSVQGGDVREPSWGP 424 (427)
T ss_pred --CCCEEEEEEEC---CCCceEEeecCCCCCCCCccCC
Confidence 23457888885 6666666766677788899998
No 21
>PRK04043 tolB translocation protein TolB; Provisional
Probab=99.88 E-value=6.4e-21 Score=212.48 Aligned_cols=228 Identities=14% Similarity=0.179 Sum_probs=167.1
Q ss_pred CCCceecCCCCE-EEEEecCCCCCccccccccceeceEEecCCCCCCcceeeeeceEEEEccCCCCCCceeeeecCCCCC
Q 002209 111 LPALSFSPQRDK-ILFLKRRALPPLEELARPEEKLAGLRIDGKCNTRSRMSFYTGIGIHQLFPDGKLGQEIEIQGFPDGA 189 (953)
Q Consensus 111 ~~~~~~SPDG~~-la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~i~~~~~~g~~~~~~~l~~~~~~~ 189 (953)
...|.|||||++ ++|++.. .+.. +||++|+.+ ++.++|+..+ .
T Consensus 190 ~~~p~wSpDG~~~i~y~s~~------------------------~~~~------~Iyv~dl~t----g~~~~lt~~~--g 233 (419)
T PRK04043 190 NIFPKWANKEQTAFYYTSYG------------------------ERKP------TLYKYNLYT----GKKEKIASSQ--G 233 (419)
T ss_pred eEeEEECCCCCcEEEEEEcc------------------------CCCC------EEEEEECCC----CcEEEEecCC--C
Confidence 457999999997 6666653 1222 799999854 6677877533 3
Q ss_pred cccceEeccCCCeEEEEEeeccccCCCCcceEEEEECCCCceeecccCCCccccccccceEEecCCeEEEEEecCCCCCC
Q 002209 190 KLNFVTWSQDGKHLAFSIRIDAEDSSSSKLRVWVADVDTGKARPLFQSPDIYLNAIFDNFVWVNNSTLLVCTIPLLRGDP 269 (953)
Q Consensus 190 ~~~~~~wSPDG~~laf~~~~~~~~~~~~~~~l~~~d~~~g~~~~lt~~~~~~~~~~~~~~~wspDg~~l~~~~~~~~~~~ 269 (953)
....|.|||||++|+|+.. .+++.+||++++++++.++||..+.. ...+.|+|||+.|+|++.
T Consensus 234 ~~~~~~~SPDG~~la~~~~------~~g~~~Iy~~dl~~g~~~~LT~~~~~-----d~~p~~SPDG~~I~F~Sd------ 296 (419)
T PRK04043 234 MLVVSDVSKDGSKLLLTMA------PKGQPDIYLYDTNTKTLTQITNYPGI-----DVNGNFVEDDKRIVFVSD------ 296 (419)
T ss_pred cEEeeEECCCCCEEEEEEc------cCCCcEEEEEECCCCcEEEcccCCCc-----cCccEECCCCCEEEEEEC------
Confidence 4567999999999999875 34578999999999999999876642 236789999999999831
Q ss_pred CCCCCCCCCCceeecCCCccccchhhhhhcCCcchhhhhhhhccceEEEEEc-CCceeEeCCCCcccccccCCCCcEEEE
Q 002209 270 PKKPLVPLGPKMQSNEKRDIIQVRTFQDLLKDEYDEDLFDYYATTQLVLVSL-DGTVKEIGPPAVYTSLDPSPDEKYILI 348 (953)
Q Consensus 270 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~l~~~~~-~g~~~~l~~~~~~~~~~~SpDG~~l~~ 348 (953)
.. +..+||++++ +|+.++++..+.. ...|||||++|+|
T Consensus 297 --------------------------------r~--------g~~~Iy~~dl~~g~~~rlt~~g~~-~~~~SPDG~~Ia~ 335 (419)
T PRK04043 297 --------------------------------RL--------GYPNIFMKKLNSGSVEQVVFHGKN-NSSVSTYKNYIVY 335 (419)
T ss_pred --------------------------------CC--------CCceEEEEECCCCCeEeCccCCCc-CceECCCCCEEEE
Confidence 10 3468999999 8888888765322 4699999999999
Q ss_pred EEecCCccccccCCCCCcceEEEeccCceEEEeccCCCcccCCccccccccCccceeeccCCCCceEEEEeccCCCcccc
Q 002209 349 SSIHRPYSFIVPCGRFPRQVGVWTTDGIFVRELCDLPLAEDIPIAFNSVRKGMRSINWRSDKPSTLYWAETQDGGDAKVE 428 (953)
Q Consensus 349 ~~~~~~~~~~~~~~~~~~~i~~~d~~g~~~~~l~~~~~~~~~p~~~~~~~~~~~~~~wspDg~~i~~~~~~~~~~~~~~~ 428 (953)
+.......+ .....+|+++|+++++.+.|+..... ..+.|||||+.|+|....
T Consensus 336 ~~~~~~~~~----~~~~~~I~v~d~~~g~~~~LT~~~~~--------------~~p~~SPDG~~I~f~~~~--------- 388 (419)
T PRK04043 336 SSRETNNEF----GKNTFNLYLISTNSDYIRRLTANGVN--------------QFPRFSSDGGSIMFIKYL--------- 388 (419)
T ss_pred EEcCCCccc----CCCCcEEEEEECCCCCeEECCCCCCc--------------CCeEECCCCCEEEEEEcc---------
Confidence 985432110 01124899999999999988874211 257899999999998332
Q ss_pred cccCCeEEEEecCCCCCCCceEEeecccccCCeee
Q 002209 429 VTPRDIIYTQQAEPVQGEGPEILHKLDLRYGGISW 463 (953)
Q Consensus 429 ~~~~~~l~~~d~~~~~g~~~~~l~~~~~~~~~~~~ 463 (953)
.+...|+++++ +|.....+....+.+..++|
T Consensus 389 -~~~~~L~~~~l---~g~~~~~l~~~~g~~~~p~W 419 (419)
T PRK04043 389 -GNQSALGIIRL---NYNKSFLFPLKVGKIQSIDW 419 (419)
T ss_pred -CCcEEEEEEec---CCCeeEEeecCCCccCCCCC
Confidence 23457899986 77777777766677777777
No 22
>PRK04792 tolB translocation protein TolB; Provisional
Probab=99.87 E-value=8.3e-21 Score=215.27 Aligned_cols=226 Identities=16% Similarity=0.230 Sum_probs=168.2
Q ss_pred CCCCceecCCCCEEEEEecCCCCCccccccccceeceEEecCCCCCCcceeeeeceEEEEccCCCCCCceeeeecCCCCC
Q 002209 110 PLPALSFSPQRDKILFLKRRALPPLEELARPEEKLAGLRIDGKCNTRSRMSFYTGIGIHQLFPDGKLGQEIEIQGFPDGA 189 (953)
Q Consensus 110 ~~~~~~~SPDG~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~i~~~~~~g~~~~~~~l~~~~~~~ 189 (953)
.+..|+|||||++|+|++.. ++.. +||++|+.+ ++.++++..+ .
T Consensus 219 ~~~~p~wSPDG~~La~~s~~------------------------~g~~------~L~~~dl~t----g~~~~lt~~~--g 262 (448)
T PRK04792 219 PLMSPAWSPDGRKLAYVSFE------------------------NRKA------EIFVQDIYT----QVREKVTSFP--G 262 (448)
T ss_pred cccCceECCCCCEEEEEEec------------------------CCCc------EEEEEECCC----CCeEEecCCC--C
Confidence 35689999999999998863 1223 789999854 4556666443 2
Q ss_pred cccceEeccCCCeEEEEEeeccccCCCCcceEEEEECCCCceeecccCCCccccccccceEEecCCeEEEEEecCCCCCC
Q 002209 190 KLNFVTWSQDGKHLAFSIRIDAEDSSSSKLRVWVADVDTGKARPLFQSPDIYLNAIFDNFVWVNNSTLLVCTIPLLRGDP 269 (953)
Q Consensus 190 ~~~~~~wSPDG~~laf~~~~~~~~~~~~~~~l~~~d~~~g~~~~lt~~~~~~~~~~~~~~~wspDg~~l~~~~~~~~~~~ 269 (953)
....|.|||||++|+|+.. .++..+||++|+++++.++++..... ...+.|+|||+.|+|+..
T Consensus 263 ~~~~~~wSPDG~~La~~~~------~~g~~~Iy~~dl~tg~~~~lt~~~~~-----~~~p~wSpDG~~I~f~s~------ 325 (448)
T PRK04792 263 INGAPRFSPDGKKLALVLS------KDGQPEIYVVDIATKALTRITRHRAI-----DTEPSWHPDGKSLIFTSE------ 325 (448)
T ss_pred CcCCeeECCCCCEEEEEEe------CCCCeEEEEEECCCCCeEECccCCCC-----ccceEECCCCCEEEEEEC------
Confidence 3568999999999999764 34578999999999999999875432 457899999999998721
Q ss_pred CCCCCCCCCCceeecCCCccccchhhhhhcCCcchhhhhhhhccceEEEEEc-CCceeEeCCC-CcccccccCCCCcEEE
Q 002209 270 PKKPLVPLGPKMQSNEKRDIIQVRTFQDLLKDEYDEDLFDYYATTQLVLVSL-DGTVKEIGPP-AVYTSLDPSPDEKYIL 347 (953)
Q Consensus 270 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~l~~~~~-~g~~~~l~~~-~~~~~~~~SpDG~~l~ 347 (953)
. + +..+||++++ +|+.++++.. .....++|||||++|+
T Consensus 326 --------------------------------~-~-------g~~~Iy~~dl~~g~~~~Lt~~g~~~~~~~~SpDG~~l~ 365 (448)
T PRK04792 326 --------------------------------R-G-------GKPQIYRVNLASGKVSRLTFEGEQNLGGSITPDGRSMI 365 (448)
T ss_pred --------------------------------C-C-------CCceEEEEECCCCCEEEEecCCCCCcCeeECCCCCEEE
Confidence 0 0 3358999999 8888888744 4445689999999999
Q ss_pred EEEecCCccccccCCCCCcceEEEeccCceEEEeccCCCcccCCccccccccCccceeeccCCCCceEEEEeccCCCccc
Q 002209 348 ISSIHRPYSFIVPCGRFPRQVGVWTTDGIFVRELCDLPLAEDIPIAFNSVRKGMRSINWRSDKPSTLYWAETQDGGDAKV 427 (953)
Q Consensus 348 ~~~~~~~~~~~~~~~~~~~~i~~~d~~g~~~~~l~~~~~~~~~p~~~~~~~~~~~~~~wspDg~~i~~~~~~~~~~~~~~ 427 (953)
|.....+ ..+|+++|++++..+.++..... ..+.|+|||+.|+|....
T Consensus 366 ~~~~~~g----------~~~I~~~dl~~g~~~~lt~~~~d--------------~~ps~spdG~~I~~~~~~-------- 413 (448)
T PRK04792 366 MVNRTNG----------KFNIARQDLETGAMQVLTSTRLD--------------ESPSVAPNGTMVIYSTTY-------- 413 (448)
T ss_pred EEEecCC----------ceEEEEEECCCCCeEEccCCCCC--------------CCceECCCCCEEEEEEec--------
Confidence 9874421 23789999998888777653211 256799999999987432
Q ss_pred ccccCCeEEEEecCCCCCCCceEEeecccccCCeeecc
Q 002209 428 EVTPRDIIYTQQAEPVQGEGPEILHKLDLRYGGISWCD 465 (953)
Q Consensus 428 ~~~~~~~l~~~d~~~~~g~~~~~l~~~~~~~~~~~~Sp 465 (953)
.....++++++ +|+..+.++...+....++|||
T Consensus 414 --~g~~~l~~~~~---~G~~~~~l~~~~g~~~~p~Wsp 446 (448)
T PRK04792 414 --QGKQVLAAVSI---DGRFKARLPAGQGEVKSPAWSP 446 (448)
T ss_pred --CCceEEEEEEC---CCCceEECcCCCCCcCCCccCC
Confidence 23457899885 7777777776667778899998
No 23
>PRK00178 tolB translocation protein TolB; Provisional
Probab=99.87 E-value=1.7e-20 Score=214.21 Aligned_cols=227 Identities=15% Similarity=0.173 Sum_probs=168.2
Q ss_pred ceEEEEccCCCCCCceeeeecCCCCCcccceEeccCCCeEEEEEeeccccCCCCcceEEEEECCCCceeecccCCCcccc
Q 002209 164 GIGIHQLFPDGKLGQEIEIQGFPDGAKLNFVTWSQDGKHLAFSIRIDAEDSSSSKLRVWVADVDTGKARPLFQSPDIYLN 243 (953)
Q Consensus 164 ~i~i~~~~~~g~~~~~~~l~~~~~~~~~~~~~wSPDG~~laf~~~~~~~~~~~~~~~l~~~d~~~g~~~~lt~~~~~~~~ 243 (953)
.|+++|. +| ...+.++. .+..+..|.|||||++|+|++. .++..+||++++++|+.++++..+..
T Consensus 180 ~l~~~d~--~g--~~~~~l~~--~~~~~~~p~wSpDG~~la~~s~------~~~~~~l~~~~l~~g~~~~l~~~~g~--- 244 (430)
T PRK00178 180 TLQRSDY--DG--ARAVTLLQ--SREPILSPRWSPDGKRIAYVSF------EQKRPRIFVQNLDTGRREQITNFEGL--- 244 (430)
T ss_pred EEEEECC--CC--CCceEEec--CCCceeeeeECCCCCEEEEEEc------CCCCCEEEEEECCCCCEEEccCCCCC---
Confidence 6888887 34 44556643 3346789999999999999874 33567999999999999888765432
Q ss_pred ccccceEEecCCeEEEEEecCCCCCCCCCCCCCCCCceeecCCCccccchhhhhhcCCcchhhhhhhhccceEEEEEc-C
Q 002209 244 AIFDNFVWVNNSTLLVCTIPLLRGDPPKKPLVPLGPKMQSNEKRDIIQVRTFQDLLKDEYDEDLFDYYATTQLVLVSL-D 322 (953)
Q Consensus 244 ~~~~~~~wspDg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~l~~~~~-~ 322 (953)
...+.|||||+.|+|+.. . + +..+||++|+ +
T Consensus 245 --~~~~~~SpDG~~la~~~~--------------------------------------~-~-------g~~~Iy~~d~~~ 276 (430)
T PRK00178 245 --NGAPAWSPDGSKLAFVLS--------------------------------------K-D-------GNPEIYVMDLAS 276 (430)
T ss_pred --cCCeEECCCCCEEEEEEc--------------------------------------c-C-------CCceEEEEECCC
Confidence 447899999999998721 0 0 3357999999 8
Q ss_pred CceeEeCCC-CcccccccCCCCcEEEEEEecCCccccccCCCCCcceEEEeccCceEEEeccCCCcccCCccccccccCc
Q 002209 323 GTVKEIGPP-AVYTSLDPSPDEKYILISSIHRPYSFIVPCGRFPRQVGVWTTDGIFVRELCDLPLAEDIPIAFNSVRKGM 401 (953)
Q Consensus 323 g~~~~l~~~-~~~~~~~~SpDG~~l~~~~~~~~~~~~~~~~~~~~~i~~~d~~g~~~~~l~~~~~~~~~p~~~~~~~~~~ 401 (953)
|+.++++.. .....+.|||||++|+|.+.+.+ ..+|+++++++++.++++.... ..
T Consensus 277 ~~~~~lt~~~~~~~~~~~spDg~~i~f~s~~~g----------~~~iy~~d~~~g~~~~lt~~~~-------------~~ 333 (430)
T PRK00178 277 RQLSRVTNHPAIDTEPFWGKDGRTLYFTSDRGG----------KPQIYKVNVNGGRAERVTFVGN-------------YN 333 (430)
T ss_pred CCeEEcccCCCCcCCeEECCCCCEEEEEECCCC----------CceEEEEECCCCCEEEeecCCC-------------Cc
Confidence 888888876 56678999999999999984431 2379999998887777764211 11
Q ss_pred cceeeccCCCCceEEEEeccCCCcccccccCCeEEEEecCCCCCCCceEEeecccccCCeeeccCCceEEEEEecccCce
Q 002209 402 RSINWRSDKPSTLYWAETQDGGDAKVEVTPRDIIYTQQAEPVQGEGPEILHKLDLRYGGISWCDDSLALVYESWYKTRRT 481 (953)
Q Consensus 402 ~~~~wspDg~~i~~~~~~~~~~~~~~~~~~~~~l~~~d~~~~~g~~~~~l~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~ 481 (953)
..+.|||||+.|+|.... .....|+++|+ .+++.+.++... ....+.|||||+.|+|+....+ ..
T Consensus 334 ~~~~~Spdg~~i~~~~~~----------~~~~~l~~~dl---~tg~~~~lt~~~-~~~~p~~spdg~~i~~~~~~~g-~~ 398 (430)
T PRK00178 334 ARPRLSADGKTLVMVHRQ----------DGNFHVAAQDL---QRGSVRILTDTS-LDESPSVAPNGTMLIYATRQQG-RG 398 (430)
T ss_pred cceEECCCCCEEEEEEcc----------CCceEEEEEEC---CCCCEEEccCCC-CCCCceECCCCCEEEEEEecCC-ce
Confidence 357899999999887321 12336899996 667777777543 3457899999999999987654 36
Q ss_pred EEEEEcCCCC
Q 002209 482 RTWVISPGSK 491 (953)
Q Consensus 482 ~l~~~d~~~~ 491 (953)
+||.++.+++
T Consensus 399 ~l~~~~~~g~ 408 (430)
T PRK00178 399 VLMLVSINGR 408 (430)
T ss_pred EEEEEECCCC
Confidence 8999999774
No 24
>COG1505 Serine proteases of the peptidase family S9A [Amino acid transport and metabolism]
Probab=99.87 E-value=1.9e-20 Score=201.55 Aligned_cols=287 Identities=20% Similarity=0.201 Sum_probs=222.8
Q ss_pred cccCCEEEEEEecCCCCceEEEEECCCCCeeEEecCCCCCCCcCCCceEEEEEEcCCCcEEEEEEEcCCCCCCCCCCCcc
Q 002209 592 YLNQLKILTSKESKTENTQYYIQSWPDKKSCQITDFPHPYPQLASLQKELIKYQRKDGVQLSATLYLPPGYDPSKDGPLP 671 (953)
Q Consensus 592 s~dg~~l~~~~~~~~~p~~l~~~~~~~g~~~~Lt~~~~~~~~~~~~~~~~~~~~~~dg~~~~~~l~~P~~~~~~~~~~~P 671 (953)
+.+|..+.+...+...|+.+|+.+..+++.+.+..... ..+-+.+.++.+..++.||++|+.+++. ++.+.. +.|
T Consensus 348 ~~~g~ev~l~~t~F~tP~~~~r~~~~~~eLe~ik~~p~-~FDa~~~~veQ~~atSkDGT~IPYFiv~-K~~~~d---~~p 422 (648)
T COG1505 348 DKDGDEVFLAFTSFTTPSTLYRLDLFGGELEVIREQPV-QFDADNYEVEQFFATSKDGTRIPYFIVR-KGAKKD---ENP 422 (648)
T ss_pred CCCCcEEEEEeecccCCCceEEEecCCceehhhhhccC-CcCccCceEEEEEEEcCCCccccEEEEe-cCCcCC---CCc
Confidence 45678899999999999999999988888877765432 1223457889999999999999999998 664333 589
Q ss_pred EEEEeCCCCCcCcCCCCcccCCCCCCCCccchHHHHHHHcCcEEEEcCCCCCCCCCChhhhhh---hHHHHHHHHHHHHH
Q 002209 672 CLFWSYPGEFKSKDAAGQVRGSPNEFPRIGSTSVLLWLARGFAILGGPTTPIIGEGDEEANDR---FVEQLVACAEAAVE 748 (953)
Q Consensus 672 ~vv~~hGg~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~G~~V~~~~~~~~~G~G~~~~~~~---~~~~~~~D~~~~~~ 748 (953)
++|+.|||...+.. | .|. .....|+++|.+.+..+.+|..-+|..++... -....++|..++++
T Consensus 423 Tll~aYGGF~vslt--------P-~fs----~~~~~WLerGg~~v~ANIRGGGEfGp~WH~Aa~k~nrq~vfdDf~AVae 489 (648)
T COG1505 423 TLLYAYGGFNISLT--------P-RFS----GSRKLWLERGGVFVLANIRGGGEFGPEWHQAGMKENKQNVFDDFIAVAE 489 (648)
T ss_pred eEEEeccccccccC--------C-ccc----hhhHHHHhcCCeEEEEecccCCccCHHHHHHHhhhcchhhhHHHHHHHH
Confidence 99999998644332 2 122 22378999998888878877777887765432 24567999999999
Q ss_pred HHHHcCCCCCCcEEEEEeChHHHHHHHHHHhCCCcccEEEEcccCCCCCCCCc-----Ccccccchh--hhhHHHHHhcC
Q 002209 749 EVVRRGVAHPSKIAVGGHSYGAFMTANLLAHAPHLFCCGIARSGAYNRTLTPF-----GFQNEDRTL--WEATSTYVEMS 821 (953)
Q Consensus 749 ~l~~~~~~d~~~i~l~G~S~GG~~a~~~a~~~p~~~~a~v~~~~~~d~~~~~~-----~~~~~~~~~--~~~~~~~~~~s 821 (953)
.|+++++..|++++|.|.|-||.++..++.++|++|.|+|+..|+.|+.-+.. .+..+.+.+ -++...+.++|
T Consensus 490 dLi~rgitspe~lgi~GgSNGGLLvg~alTQrPelfgA~v~evPllDMlRYh~l~aG~sW~~EYG~Pd~P~d~~~l~~YS 569 (648)
T COG1505 490 DLIKRGITSPEKLGIQGGSNGGLLVGAALTQRPELFGAAVCEVPLLDMLRYHLLTAGSSWIAEYGNPDDPEDRAFLLAYS 569 (648)
T ss_pred HHHHhCCCCHHHhhhccCCCCceEEEeeeccChhhhCceeeccchhhhhhhcccccchhhHhhcCCCCCHHHHHHHHhcC
Confidence 99999999999999999999999999999999999999999999998643221 122222222 23345678899
Q ss_pred cccccCCC--CCcEEEEEeCCCCCCCCchHHHHHHHHHHHhCCCcEEEEEeCCCCccCCCcccH-HHHHHHHHHHHHHhc
Q 002209 822 PFMSANKL--KKPILLVHGEEDNNSGTLTMQSDRFFNALKGHGALCRLVILPFESHGYAARESI-MHVLWETDRWLQKYC 898 (953)
Q Consensus 822 p~~~~~~i--~~P~Li~~G~~D~~v~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~H~~~~~~~~-~~~~~~i~~fl~~~l 898 (953)
|+++++.- -.|+||..+++|.+|+ |.|+++|+.+|+..+.++-+.+--++||+-...... ......++.||.+.|
T Consensus 570 Py~nl~~g~kYP~~LITTs~~DDRVH--PaHarKfaa~L~e~~~pv~~~e~t~gGH~g~~~~~~~A~~~a~~~afl~r~L 647 (648)
T COG1505 570 PYHNLKPGQKYPPTLITTSLHDDRVH--PAHARKFAAKLQEVGAPVLLREETKGGHGGAAPTAEIARELADLLAFLLRTL 647 (648)
T ss_pred chhcCCccccCCCeEEEccccccccc--chHHHHHHHHHHhcCCceEEEeecCCcccCCCChHHHHHHHHHHHHHHHHhh
Confidence 99988763 4699999999999999 999999999999999998888877889986533322 344556788888876
No 25
>PRK04922 tolB translocation protein TolB; Provisional
Probab=99.86 E-value=8.2e-20 Score=207.60 Aligned_cols=255 Identities=16% Similarity=0.142 Sum_probs=183.4
Q ss_pred CCeEEEEEeeccccCCCCcceEEEEECCCCceeecccCCCccccccccceEEecCCeEEEEEecCCCCCCCCCCCCCCCC
Q 002209 200 GKHLAFSIRIDAEDSSSSKLRVWVADVDTGKARPLFQSPDIYLNAIFDNFVWVNNSTLLVCTIPLLRGDPPKKPLVPLGP 279 (953)
Q Consensus 200 G~~laf~~~~~~~~~~~~~~~l~~~d~~~g~~~~lt~~~~~~~~~~~~~~~wspDg~~l~~~~~~~~~~~~~~~~~~~~~ 279 (953)
+.+|+|+.... ..+....+||++|.+++..++++..... +..++|||||+.|+|...
T Consensus 167 ~~~ia~v~~~~--~~~~~~~~l~i~D~~g~~~~~lt~~~~~-----v~~p~wSpDg~~la~~s~---------------- 223 (433)
T PRK04922 167 WTRIAYVTVSG--AGGAMRYALQVADSDGYNPQTILRSAEP-----ILSPAWSPDGKKLAYVSF---------------- 223 (433)
T ss_pred cceEEEEEEeC--CCCCceEEEEEECCCCCCceEeecCCCc-----cccccCCCCCCEEEEEec----------------
Confidence 35799987532 1223457899999998888889876543 668999999999998721
Q ss_pred ceeecCCCccccchhhhhhcCCcchhhhhhhhccceEEEEEc-CCceeEeCCC-CcccccccCCCCcEEEEEEecCCccc
Q 002209 280 KMQSNEKRDIIQVRTFQDLLKDEYDEDLFDYYATTQLVLVSL-DGTVKEIGPP-AVYTSLDPSPDEKYILISSIHRPYSF 357 (953)
Q Consensus 280 ~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~l~~~~~-~g~~~~l~~~-~~~~~~~~SpDG~~l~~~~~~~~~~~ 357 (953)
.. +..+||++++ +|+.+.++.. +....+.|||||++|+|+.....
T Consensus 224 ----------------------~~--------~~~~l~~~dl~~g~~~~l~~~~g~~~~~~~SpDG~~l~~~~s~~g--- 270 (433)
T PRK04922 224 ----------------------ER--------GRSAIYVQDLATGQRELVASFRGINGAPSFSPDGRRLALTLSRDG--- 270 (433)
T ss_pred ----------------------CC--------CCcEEEEEECCCCCEEEeccCCCCccCceECCCCCEEEEEEeCCC---
Confidence 00 3357999999 8888888755 55568999999999999864321
Q ss_pred cccCCCCCcceEEEeccCceEEEeccCCCcccCCccccccccCccceeeccCCCCceEEEEeccCCCcccccccCCeEEE
Q 002209 358 IVPCGRFPRQVGVWTTDGIFVRELCDLPLAEDIPIAFNSVRKGMRSINWRSDKPSTLYWAETQDGGDAKVEVTPRDIIYT 437 (953)
Q Consensus 358 ~~~~~~~~~~i~~~d~~g~~~~~l~~~~~~~~~p~~~~~~~~~~~~~~wspDg~~i~~~~~~~~~~~~~~~~~~~~~l~~ 437 (953)
..+|+++|+++++.++++..... ...++|||||+.|+|..+. .+..+||+
T Consensus 271 -------~~~Iy~~d~~~g~~~~lt~~~~~-------------~~~~~~spDG~~l~f~sd~----------~g~~~iy~ 320 (433)
T PRK04922 271 -------NPEIYVMDLGSRQLTRLTNHFGI-------------DTEPTWAPDGKSIYFTSDR----------GGRPQIYR 320 (433)
T ss_pred -------CceEEEEECCCCCeEECccCCCC-------------ccceEECCCCCEEEEEECC----------CCCceEEE
Confidence 23899999998888887764321 2357899999999998322 22347999
Q ss_pred EecCCCCCCCceEEeecccccCCeeeccCCceEEEEEecccCceEEEEEcCCCCCCCcEEeecCCCccccCCCCCCCeEe
Q 002209 438 QQAEPVQGEGPEILHKLDLRYGGISWCDDSLALVYESWYKTRRTRTWVISPGSKDVAPRILFDRSSEDVYSDPGSPMMRR 517 (953)
Q Consensus 438 ~d~~~~~g~~~~~l~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~ 517 (953)
+++ ++++.++++........++|||||++|+|....+ ...+|++++++++ +.+.++.... + .. +.|
T Consensus 321 ~dl---~~g~~~~lt~~g~~~~~~~~SpDG~~Ia~~~~~~-~~~~I~v~d~~~g--~~~~Lt~~~~-~-----~~--p~~ 386 (433)
T PRK04922 321 VAA---SGGSAERLTFQGNYNARASVSPDGKKIAMVHGSG-GQYRIAVMDLSTG--SVRTLTPGSL-D-----ES--PSF 386 (433)
T ss_pred EEC---CCCCeEEeecCCCCccCEEECCCCCEEEEEECCC-CceeEEEEECCCC--CeEECCCCCC-C-----CC--ceE
Confidence 986 6667777765444445799999999999986543 3358999999875 4555554321 1 12 579
Q ss_pred ccCCCEEEEEeeeccCCCcEEEEecCCCCCCCCCCeEEEEECCCCceEEEeccCc
Q 002209 518 TSTGTYVIAKIKKENDEGTYILLNGNGATPEGNIPFLDLFDINTGSKERIWESDK 572 (953)
Q Consensus 518 SpDG~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~d~~~~~~~~l~~~~~ 572 (953)
||||++|+|..... ....||+++++++..++++...+
T Consensus 387 spdG~~i~~~s~~~------------------g~~~L~~~~~~g~~~~~l~~~~g 423 (433)
T PRK04922 387 APNGSMVLYATREG------------------GRGVLAAVSTDGRVRQRLVSADG 423 (433)
T ss_pred CCCCCEEEEEEecC------------------CceEEEEEECCCCceEEcccCCC
Confidence 99999999987421 24469999998888787775543
No 26
>PRK01742 tolB translocation protein TolB; Provisional
Probab=99.86 E-value=8e-20 Score=207.24 Aligned_cols=221 Identities=17% Similarity=0.171 Sum_probs=157.8
Q ss_pred eceEEEEccCCCCCCceeeeecCCCCCcccceEeccCCCeEEEEEeeccccCCCCcceEEEEECCCCceeecccCCCccc
Q 002209 163 TGIGIHQLFPDGKLGQEIEIQGFPDGAKLNFVTWSQDGKHLAFSIRIDAEDSSSSKLRVWVADVDTGKARPLFQSPDIYL 242 (953)
Q Consensus 163 ~~i~i~~~~~~g~~~~~~~l~~~~~~~~~~~~~wSPDG~~laf~~~~~~~~~~~~~~~l~~~d~~~g~~~~lt~~~~~~~ 242 (953)
.+||+||. +| ...+.|+.. ...+..|.|||||++|+|++. +++..+||++|+++|+.+.++..+..
T Consensus 184 ~~i~i~d~--dg--~~~~~lt~~--~~~v~~p~wSPDG~~la~~s~------~~~~~~i~i~dl~tg~~~~l~~~~g~-- 249 (429)
T PRK01742 184 YEVRVADY--DG--FNQFIVNRS--SQPLMSPAWSPDGSKLAYVSF------ENKKSQLVVHDLRSGARKVVASFRGH-- 249 (429)
T ss_pred EEEEEECC--CC--CCceEeccC--CCccccceEcCCCCEEEEEEe------cCCCcEEEEEeCCCCceEEEecCCCc--
Confidence 47999997 44 334555432 236899999999999999874 33567899999999988777654432
Q ss_pred cccccceEEecCCeEEEEEecCCCCCCCCCCCCCCCCceeecCCCccccchhhhhhcCCcchhhhhhhhccceEEEEEc-
Q 002209 243 NAIFDNFVWVNNSTLLVCTIPLLRGDPPKKPLVPLGPKMQSNEKRDIIQVRTFQDLLKDEYDEDLFDYYATTQLVLVSL- 321 (953)
Q Consensus 243 ~~~~~~~~wspDg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~l~~~~~- 321 (953)
...++|||||+.|+++... + +..+||++|+
T Consensus 250 ---~~~~~wSPDG~~La~~~~~---------------------------------------~-------g~~~Iy~~d~~ 280 (429)
T PRK01742 250 ---NGAPAFSPDGSRLAFASSK---------------------------------------D-------GVLNIYVMGAN 280 (429)
T ss_pred ---cCceeECCCCCEEEEEEec---------------------------------------C-------CcEEEEEEECC
Confidence 3478999999999987210 1 3357999999
Q ss_pred CCceeEeCCC-CcccccccCCCCcEEEEEEecCCccccccCCCCCcceEEEeccCceEEEeccCCCcccCCccccccccC
Q 002209 322 DGTVKEIGPP-AVYTSLDPSPDEKYILISSIHRPYSFIVPCGRFPRQVGVWTTDGIFVRELCDLPLAEDIPIAFNSVRKG 400 (953)
Q Consensus 322 ~g~~~~l~~~-~~~~~~~~SpDG~~l~~~~~~~~~~~~~~~~~~~~~i~~~d~~g~~~~~l~~~~~~~~~p~~~~~~~~~ 400 (953)
+++.++++.. ..+..+.|||||++|+|++.+.. ..+||.++.+++..+.+.. . +
T Consensus 281 ~~~~~~lt~~~~~~~~~~wSpDG~~i~f~s~~~g----------~~~I~~~~~~~~~~~~l~~-~--------------~ 335 (429)
T PRK01742 281 GGTPSQLTSGAGNNTEPSWSPDGQSILFTSDRSG----------SPQVYRMSASGGGASLVGG-R--------------G 335 (429)
T ss_pred CCCeEeeccCCCCcCCEEECCCCCEEEEEECCCC----------CceEEEEECCCCCeEEecC-C--------------C
Confidence 7888888876 66788999999999999974321 1267777777666555421 1 1
Q ss_pred ccceeeccCCCCceEEEEeccCCCcccccccCCeEEEEecCCCCCCCceEEeecccccCCeeeccCCceEEEEEecccCc
Q 002209 401 MRSINWRSDKPSTLYWAETQDGGDAKVEVTPRDIIYTQQAEPVQGEGPEILHKLDLRYGGISWCDDSLALVYESWYKTRR 480 (953)
Q Consensus 401 ~~~~~wspDg~~i~~~~~~~~~~~~~~~~~~~~~l~~~d~~~~~g~~~~~l~~~~~~~~~~~~SpDg~~l~~~~~~~~~~ 480 (953)
..+.|||||+.|++. .. +.++++|+ .+++.+.++.. .....+.|||||+.|+|++.++..
T Consensus 336 -~~~~~SpDG~~ia~~-------------~~-~~i~~~Dl---~~g~~~~lt~~-~~~~~~~~sPdG~~i~~~s~~g~~- 395 (429)
T PRK01742 336 -YSAQISADGKTLVMI-------------NG-DNVVKQDL---TSGSTEVLSST-FLDESPSISPNGIMIIYSSTQGLG- 395 (429)
T ss_pred -CCccCCCCCCEEEEE-------------cC-CCEEEEEC---CCCCeEEecCC-CCCCCceECCCCCEEEEEEcCCCc-
Confidence 246799999998887 21 35777886 55666666543 344679999999999999875543
Q ss_pred eEEEEEcCCCC
Q 002209 481 TRTWVISPGSK 491 (953)
Q Consensus 481 ~~l~~~d~~~~ 491 (953)
..++.++.++.
T Consensus 396 ~~l~~~~~~G~ 406 (429)
T PRK01742 396 KVLQLVSADGR 406 (429)
T ss_pred eEEEEEECCCC
Confidence 34666676663
No 27
>PRK00178 tolB translocation protein TolB; Provisional
Probab=99.86 E-value=2e-19 Score=205.44 Aligned_cols=255 Identities=16% Similarity=0.129 Sum_probs=182.8
Q ss_pred CCCeEEEEEeeccccCCCCcceEEEEECCCCceeecccCCCccccccccceEEecCCeEEEEEecCCCCCCCCCCCCCCC
Q 002209 199 DGKHLAFSIRIDAEDSSSSKLRVWVADVDTGKARPLFQSPDIYLNAIFDNFVWVNNSTLLVCTIPLLRGDPPKKPLVPLG 278 (953)
Q Consensus 199 DG~~laf~~~~~~~~~~~~~~~l~~~d~~~g~~~~lt~~~~~~~~~~~~~~~wspDg~~l~~~~~~~~~~~~~~~~~~~~ 278 (953)
-.++|+|+.... ...++..+||++|.+|+..++++..... +..+.|||||+.|+|...
T Consensus 161 f~~~ia~v~~~~--~~~~~~~~l~~~d~~g~~~~~l~~~~~~-----~~~p~wSpDG~~la~~s~--------------- 218 (430)
T PRK00178 161 FSTRILYVTAER--FSVNTRYTLQRSDYDGARAVTLLQSREP-----ILSPRWSPDGKRIAYVSF--------------- 218 (430)
T ss_pred ceeeEEEEEeeC--CCCCcceEEEEECCCCCCceEEecCCCc-----eeeeeECCCCCEEEEEEc---------------
Confidence 345799977533 1123456899999999888888765542 568999999999998721
Q ss_pred CceeecCCCccccchhhhhhcCCcchhhhhhhhccceEEEEEc-CCceeEeCCC-CcccccccCCCCcEEEEEEecCCcc
Q 002209 279 PKMQSNEKRDIIQVRTFQDLLKDEYDEDLFDYYATTQLVLVSL-DGTVKEIGPP-AVYTSLDPSPDEKYILISSIHRPYS 356 (953)
Q Consensus 279 ~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~l~~~~~-~g~~~~l~~~-~~~~~~~~SpDG~~l~~~~~~~~~~ 356 (953)
. + +..+||++++ +|+.++++.. +....+.|||||++|+|+.....
T Consensus 219 -----------------------~-~-------~~~~l~~~~l~~g~~~~l~~~~g~~~~~~~SpDG~~la~~~~~~g-- 265 (430)
T PRK00178 219 -----------------------E-Q-------KRPRIFVQNLDTGRREQITNFEGLNGAPAWSPDGSKLAFVLSKDG-- 265 (430)
T ss_pred -----------------------C-C-------CCCEEEEEECCCCCEEEccCCCCCcCCeEECCCCCEEEEEEccCC--
Confidence 0 0 2357999999 8888888765 55667999999999999874321
Q ss_pred ccccCCCCCcceEEEeccCceEEEeccCCCcccCCccccccccCccceeeccCCCCceEEEEeccCCCcccccccCCeEE
Q 002209 357 FIVPCGRFPRQVGVWTTDGIFVRELCDLPLAEDIPIAFNSVRKGMRSINWRSDKPSTLYWAETQDGGDAKVEVTPRDIIY 436 (953)
Q Consensus 357 ~~~~~~~~~~~i~~~d~~g~~~~~l~~~~~~~~~p~~~~~~~~~~~~~~wspDg~~i~~~~~~~~~~~~~~~~~~~~~l~ 436 (953)
..+||++|++++..++++..... ...+.|||||+.|+|..+. .+..+||
T Consensus 266 --------~~~Iy~~d~~~~~~~~lt~~~~~-------------~~~~~~spDg~~i~f~s~~----------~g~~~iy 314 (430)
T PRK00178 266 --------NPEIYVMDLASRQLSRVTNHPAI-------------DTEPFWGKDGRTLYFTSDR----------GGKPQIY 314 (430)
T ss_pred --------CceEEEEECCCCCeEEcccCCCC-------------cCCeEECCCCCEEEEEECC----------CCCceEE
Confidence 23899999998888888764321 2457899999999998322 2345799
Q ss_pred EEecCCCCCCCceEEeecccccCCeeeccCCceEEEEEecccCceEEEEEcCCCCCCCcEEeecCCCccccCCCCCCCeE
Q 002209 437 TQQAEPVQGEGPEILHKLDLRYGGISWCDDSLALVYESWYKTRRTRTWVISPGSKDVAPRILFDRSSEDVYSDPGSPMMR 516 (953)
Q Consensus 437 ~~d~~~~~g~~~~~l~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~p~~~ 516 (953)
++++ .+++.++++........+.|||||++|+|....++ ..+||.+|++++ +.+.+++.. .+ .. ++
T Consensus 315 ~~d~---~~g~~~~lt~~~~~~~~~~~Spdg~~i~~~~~~~~-~~~l~~~dl~tg--~~~~lt~~~-~~-----~~--p~ 380 (430)
T PRK00178 315 KVNV---NGGRAERVTFVGNYNARPRLSADGKTLVMVHRQDG-NFHVAAQDLQRG--SVRILTDTS-LD-----ES--PS 380 (430)
T ss_pred EEEC---CCCCEEEeecCCCCccceEECCCCCEEEEEEccCC-ceEEEEEECCCC--CEEEccCCC-CC-----CC--ce
Confidence 9986 66777777644434456899999999999876543 457999999885 455565432 11 12 56
Q ss_pred eccCCCEEEEEeeeccCCCcEEEEecCCCCCCCCCCeEEEEECCCCceEEEeccC
Q 002209 517 RTSTGTYVIAKIKKENDEGTYILLNGNGATPEGNIPFLDLFDINTGSKERIWESD 571 (953)
Q Consensus 517 ~SpDG~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~d~~~~~~~~l~~~~ 571 (953)
|||||++++|..... ....|++++++++..+++....
T Consensus 381 ~spdg~~i~~~~~~~------------------g~~~l~~~~~~g~~~~~l~~~~ 417 (430)
T PRK00178 381 VAPNGTMLIYATRQQ------------------GRGVLMLVSINGRVRLPLPTAQ 417 (430)
T ss_pred ECCCCCEEEEEEecC------------------CceEEEEEECCCCceEECcCCC
Confidence 999999999987422 2346999999877766665433
No 28
>KOG1455 consensus Lysophospholipase [Lipid transport and metabolism]
Probab=99.85 E-value=6.6e-20 Score=182.95 Aligned_cols=232 Identities=14% Similarity=0.146 Sum_probs=169.8
Q ss_pred eEEEEEEcCCCcEEEEEEEcCCCCCCCCCCCccEEEEeCCCCCcCcCCCCcccCCCCCCCCccchHHHHHHHcCcEEEEc
Q 002209 639 KELIKYQRKDGVQLSATLYLPPGYDPSKDGPLPCLFWSYPGEFKSKDAAGQVRGSPNEFPRIGSTSVLLWLARGFAILGG 718 (953)
Q Consensus 639 ~~~~~~~~~dg~~~~~~l~~P~~~~~~~~~~~P~vv~~hGg~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~G~~V~~~ 718 (953)
...-.+.+.+|.++....|+|.+- .++..+|+++||... . ........+..|++.||.|++
T Consensus 27 ~~~~~~~n~rG~~lft~~W~p~~~----~~pr~lv~~~HG~g~------------~--~s~~~~~~a~~l~~~g~~v~a- 87 (313)
T KOG1455|consen 27 YSESFFTNPRGAKLFTQSWLPLSG----TEPRGLVFLCHGYGE------------H--SSWRYQSTAKRLAKSGFAVYA- 87 (313)
T ss_pred eeeeeEEcCCCCEeEEEecccCCC----CCCceEEEEEcCCcc------------c--chhhHHHHHHHHHhCCCeEEE-
Confidence 344557788999999999999652 245778999999420 0 011123467789999999999
Q ss_pred CCCCCCCCCChhhhhh---hHHHHHHHHHHHHHHHHHcCCCCCCcEEEEEeChHHHHHHHHHHhCCCcccEEEEcccCCC
Q 002209 719 PTTPIIGEGDEEANDR---FVEQLVACAEAAVEEVVRRGVAHPSKIAVGGHSYGAFMTANLLAHAPHLFCCGIARSGAYN 795 (953)
Q Consensus 719 ~~~~~~G~G~~~~~~~---~~~~~~~D~~~~~~~l~~~~~~d~~~i~l~G~S~GG~~a~~~a~~~p~~~~a~v~~~~~~d 795 (953)
+|..|+|.+.+... .+...++|+...++.++.+......+.+++||||||.+++.++.++|+.+.++|+++|++-
T Consensus 88 --~D~~GhG~SdGl~~yi~~~d~~v~D~~~~~~~i~~~~e~~~lp~FL~GeSMGGAV~Ll~~~k~p~~w~G~ilvaPmc~ 165 (313)
T KOG1455|consen 88 --IDYEGHGRSDGLHAYVPSFDLVVDDVISFFDSIKEREENKGLPRFLFGESMGGAVALLIALKDPNFWDGAILVAPMCK 165 (313)
T ss_pred --eeccCCCcCCCCcccCCcHHHHHHHHHHHHHHHhhccccCCCCeeeeecCcchHHHHHHHhhCCcccccceeeecccc
Confidence 66678888876443 3678899999999998887655556899999999999999999999999999999998643
Q ss_pred CC--CC-----------------CcCc-ccc------cchhhhhHHHHHhc----------------------CcccccC
Q 002209 796 RT--LT-----------------PFGF-QNE------DRTLWEATSTYVEM----------------------SPFMSAN 827 (953)
Q Consensus 796 ~~--~~-----------------~~~~-~~~------~~~~~~~~~~~~~~----------------------sp~~~~~ 827 (953)
.. .. .|.. ... .+.++. ...... ....++.
T Consensus 166 i~~~~kp~p~v~~~l~~l~~liP~wk~vp~~d~~~~~~kdp~~--r~~~~~npl~y~g~pRl~T~~ElLr~~~~le~~l~ 243 (313)
T KOG1455|consen 166 ISEDTKPHPPVISILTLLSKLIPTWKIVPTKDIIDVAFKDPEK--RKILRSDPLCYTGKPRLKTAYELLRVTADLEKNLN 243 (313)
T ss_pred cCCccCCCcHHHHHHHHHHHhCCceeecCCccccccccCCHHH--HHHhhcCCceecCCccHHHHHHHHHHHHHHHHhcc
Confidence 11 00 0100 000 011111 111111 2234567
Q ss_pred CCCCcEEEEEeCCCCCCCCchHHHHHHHHHHHhCCCcEEEEEeCCCCccCC---CcccHHHHHHHHHHHHHHh
Q 002209 828 KLKKPILLVHGEEDNNSGTLTMQSDRFFNALKGHGALCRLVILPFESHGYA---ARESIMHVLWETDRWLQKY 897 (953)
Q Consensus 828 ~i~~P~Li~~G~~D~~v~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~H~~~---~~~~~~~~~~~i~~fl~~~ 897 (953)
++..|+||+||++|.++. +.-++++|+.+...+ +++.+|||+-|.+. ..++.+.++..|.+||+++
T Consensus 244 ~vtvPflilHG~dD~VTD--p~~Sk~Lye~A~S~D--KTlKlYpGm~H~Ll~gE~~en~e~Vf~DI~~Wl~~r 312 (313)
T KOG1455|consen 244 EVTVPFLILHGTDDKVTD--PKVSKELYEKASSSD--KTLKLYPGMWHSLLSGEPDENVEIVFGDIISWLDER 312 (313)
T ss_pred cccccEEEEecCCCcccC--cHHHHHHHHhccCCC--CceeccccHHHHhhcCCCchhHHHHHHHHHHHHHhc
Confidence 788999999999999988 999999999987765 46778999999976 4567889999999999875
No 29
>PRK01742 tolB translocation protein TolB; Provisional
Probab=99.83 E-value=5.1e-19 Score=200.70 Aligned_cols=221 Identities=18% Similarity=0.201 Sum_probs=160.0
Q ss_pred CCCCceecCCCCEEEEEecCCCCCccccccccceeceEEecCCCCCCcceeeeeceEEEEccCCCCCCceeeeecCCCCC
Q 002209 110 PLPALSFSPQRDKILFLKRRALPPLEELARPEEKLAGLRIDGKCNTRSRMSFYTGIGIHQLFPDGKLGQEIEIQGFPDGA 189 (953)
Q Consensus 110 ~~~~~~~SPDG~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~i~~~~~~g~~~~~~~l~~~~~~~ 189 (953)
.+..|+|||||++|||++.+ +.. ..||+||+.+ ++.+.++.++.
T Consensus 205 ~v~~p~wSPDG~~la~~s~~------------------------~~~------~~i~i~dl~t----g~~~~l~~~~g-- 248 (429)
T PRK01742 205 PLMSPAWSPDGSKLAYVSFE------------------------NKK------SQLVVHDLRS----GARKVVASFRG-- 248 (429)
T ss_pred ccccceEcCCCCEEEEEEec------------------------CCC------cEEEEEeCCC----CceEEEecCCC--
Confidence 46789999999999998863 122 2689999854 44556654432
Q ss_pred cccceEeccCCCeEEEEEeeccccCCCCcceEEEEECCCCceeecccCCCccccccccceEEecCCeEEEEEecCCCCCC
Q 002209 190 KLNFVTWSQDGKHLAFSIRIDAEDSSSSKLRVWVADVDTGKARPLFQSPDIYLNAIFDNFVWVNNSTLLVCTIPLLRGDP 269 (953)
Q Consensus 190 ~~~~~~wSPDG~~laf~~~~~~~~~~~~~~~l~~~d~~~g~~~~lt~~~~~~~~~~~~~~~wspDg~~l~~~~~~~~~~~ 269 (953)
....++|||||++|+|... .++..+||++|+++++.++++..... ...+.|+|||+.|+|+..
T Consensus 249 ~~~~~~wSPDG~~La~~~~------~~g~~~Iy~~d~~~~~~~~lt~~~~~-----~~~~~wSpDG~~i~f~s~------ 311 (429)
T PRK01742 249 HNGAPAFSPDGSRLAFASS------KDGVLNIYVMGANGGTPSQLTSGAGN-----NTEPSWSPDGQSILFTSD------ 311 (429)
T ss_pred ccCceeECCCCCEEEEEEe------cCCcEEEEEEECCCCCeEeeccCCCC-----cCCEEECCCCCEEEEEEC------
Confidence 3457999999999999764 33567899999999999999875432 558999999999998721
Q ss_pred CCCCCCCCCCceeecCCCccccchhhhhhcCCcchhhhhhhhccceEEEEEc-CCceeEeCCCCcccccccCCCCcEEEE
Q 002209 270 PKKPLVPLGPKMQSNEKRDIIQVRTFQDLLKDEYDEDLFDYYATTQLVLVSL-DGTVKEIGPPAVYTSLDPSPDEKYILI 348 (953)
Q Consensus 270 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~l~~~~~-~g~~~~l~~~~~~~~~~~SpDG~~l~~ 348 (953)
. + +..+||.++. ++..++++... ..+.|||||++|++
T Consensus 312 --------------------------------~-~-------g~~~I~~~~~~~~~~~~l~~~~--~~~~~SpDG~~ia~ 349 (429)
T PRK01742 312 --------------------------------R-S-------GSPQVYRMSASGGGASLVGGRG--YSAQISADGKTLVM 349 (429)
T ss_pred --------------------------------C-C-------CCceEEEEECCCCCeEEecCCC--CCccCCCCCCEEEE
Confidence 0 0 3357999998 66666663323 46789999999999
Q ss_pred EEecCCccccccCCCCCcceEEEeccCceEEEeccCCCcccCCccccccccCccceeeccCCCCceEEEEeccCCCcccc
Q 002209 349 SSIHRPYSFIVPCGRFPRQVGVWTTDGIFVRELCDLPLAEDIPIAFNSVRKGMRSINWRSDKPSTLYWAETQDGGDAKVE 428 (953)
Q Consensus 349 ~~~~~~~~~~~~~~~~~~~i~~~d~~g~~~~~l~~~~~~~~~p~~~~~~~~~~~~~~wspDg~~i~~~~~~~~~~~~~~~ 428 (953)
... ..+++||+.++..+.++... . ..++.|||||+.|+|... +
T Consensus 350 ~~~--------------~~i~~~Dl~~g~~~~lt~~~-~-------------~~~~~~sPdG~~i~~~s~--~------- 392 (429)
T PRK01742 350 ING--------------DNVVKQDLTSGSTEVLSSTF-L-------------DESPSISPNGIMIIYSST--Q------- 392 (429)
T ss_pred EcC--------------CCEEEEECCCCCeEEecCCC-C-------------CCCceECCCCCEEEEEEc--C-------
Confidence 863 26888999877766665321 1 135789999999988732 1
Q ss_pred cccCCeEEEEecCCCCCCCceEEeecccccCCeeeccC
Q 002209 429 VTPRDIIYTQQAEPVQGEGPEILHKLDLRYGGISWCDD 466 (953)
Q Consensus 429 ~~~~~~l~~~d~~~~~g~~~~~l~~~~~~~~~~~~SpD 466 (953)
.....++++++ +|...+.+..+.+.+..++|||-
T Consensus 393 -g~~~~l~~~~~---~G~~~~~l~~~~g~~~~p~wsp~ 426 (429)
T PRK01742 393 -GLGKVLQLVSA---DGRFKARLPGSDGQVKFPAWSPY 426 (429)
T ss_pred -CCceEEEEEEC---CCCceEEccCCCCCCCCcccCCC
Confidence 22335667664 77777778777777888999984
No 30
>PLN02298 hydrolase, alpha/beta fold family protein
Probab=99.83 E-value=7.9e-19 Score=193.22 Aligned_cols=244 Identities=16% Similarity=0.179 Sum_probs=166.1
Q ss_pred CcCCCceEEEEEEcCCCcEEEEEEEcCCCCCCCCCCCccEEEEeCCCCCcCcCCCCcccCCCCCCCCccchHHHHHHHcC
Q 002209 633 QLASLQKELIKYQRKDGVQLSATLYLPPGYDPSKDGPLPCLFWSYPGEFKSKDAAGQVRGSPNEFPRIGSTSVLLWLARG 712 (953)
Q Consensus 633 ~~~~~~~~~~~~~~~dg~~~~~~l~~P~~~~~~~~~~~P~vv~~hGg~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~G 712 (953)
....+..+...++..||.++++..+.|++. ..+.++||++||.... ..+ ........|+++|
T Consensus 26 ~~~~~~~~~~~~~~~dg~~l~~~~~~~~~~----~~~~~~VvllHG~~~~------------~~~--~~~~~~~~L~~~G 87 (330)
T PLN02298 26 ALKGIKGSKSFFTSPRGLSLFTRSWLPSSS----SPPRALIFMVHGYGND------------ISW--TFQSTAIFLAQMG 87 (330)
T ss_pred hccCCccccceEEcCCCCEEEEEEEecCCC----CCCceEEEEEcCCCCC------------cce--ehhHHHHHHHhCC
Confidence 344456667778888999999999988641 1246899999995210 011 1122345688899
Q ss_pred cEEEEcCCCCCCCCCChhhhh---hhHHHHHHHHHHHHHHHHHcCCCCCCcEEEEEeChHHHHHHHHHHhCCCcccEEEE
Q 002209 713 FAILGGPTTPIIGEGDEEAND---RFVEQLVACAEAAVEEVVRRGVAHPSKIAVGGHSYGAFMTANLLAHAPHLFCCGIA 789 (953)
Q Consensus 713 ~~V~~~~~~~~~G~G~~~~~~---~~~~~~~~D~~~~~~~l~~~~~~d~~~i~l~G~S~GG~~a~~~a~~~p~~~~a~v~ 789 (953)
|.|++ +|.+|+|.+.... ......+.|+.++++++......+..+++|+||||||.+++.++.++|++++++|+
T Consensus 88 y~V~~---~D~rGhG~S~~~~~~~~~~~~~~~D~~~~i~~l~~~~~~~~~~i~l~GhSmGG~ia~~~a~~~p~~v~~lvl 164 (330)
T PLN02298 88 FACFA---LDLEGHGRSEGLRAYVPNVDLVVEDCLSFFNSVKQREEFQGLPRFLYGESMGGAICLLIHLANPEGFDGAVL 164 (330)
T ss_pred CEEEE---ecCCCCCCCCCccccCCCHHHHHHHHHHHHHHHHhcccCCCCCEEEEEecchhHHHHHHHhcCcccceeEEE
Confidence 99999 5667888775322 23567789999999999876444456899999999999999999999999999999
Q ss_pred cccCCCCCCC---CcCc----------------ccccchh-----hhhHHHHHhcCc----------------------c
Q 002209 790 RSGAYNRTLT---PFGF----------------QNEDRTL-----WEATSTYVEMSP----------------------F 823 (953)
Q Consensus 790 ~~~~~d~~~~---~~~~----------------~~~~~~~-----~~~~~~~~~~sp----------------------~ 823 (953)
.+|....... .+.. ....... ......+...+| .
T Consensus 165 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 244 (330)
T PLN02298 165 VAPMCKISDKIRPPWPIPQILTFVARFLPTLAIVPTADLLEKSVKVPAKKIIAKRNPMRYNGKPRLGTVVELLRVTDYLG 244 (330)
T ss_pred ecccccCCcccCCchHHHHHHHHHHHHCCCCccccCCCcccccccCHHHHHHHHhCccccCCCccHHHHHHHHHHHHHHH
Confidence 9886432110 0000 0000000 000000111111 1
Q ss_pred cccCCCCCcEEEEEeCCCCCCCCchHHHHHHHHHHHhCCCcEEEEEeCCCCccCCCc---ccHHHHHHHHHHHHHHhccC
Q 002209 824 MSANKLKKPILLVHGEEDNNSGTLTMQSDRFFNALKGHGALCRLVILPFESHGYAAR---ESIMHVLWETDRWLQKYCVS 900 (953)
Q Consensus 824 ~~~~~i~~P~Li~~G~~D~~v~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~H~~~~~---~~~~~~~~~i~~fl~~~l~~ 900 (953)
..+.++++|+||+||++|..|| ++.++++++++... .++++++++++|..... ...+.+.+.+.+||.+++..
T Consensus 245 ~~l~~i~~PvLii~G~~D~ivp--~~~~~~l~~~i~~~--~~~l~~~~~a~H~~~~e~pd~~~~~~~~~i~~fl~~~~~~ 320 (330)
T PLN02298 245 KKLKDVSIPFIVLHGSADVVTD--PDVSRALYEEAKSE--DKTIKIYDGMMHSLLFGEPDENIEIVRRDILSWLNERCTG 320 (330)
T ss_pred HhhhhcCCCEEEEecCCCCCCC--HHHHHHHHHHhccC--CceEEEcCCcEeeeecCCCHHHHHHHHHHHHHHHHHhccC
Confidence 2356789999999999999999 99999999887643 35888999999987422 12356788899999999754
Q ss_pred C
Q 002209 901 N 901 (953)
Q Consensus 901 ~ 901 (953)
.
T Consensus 321 ~ 321 (330)
T PLN02298 321 K 321 (330)
T ss_pred C
Confidence 3
No 31
>PRK10566 esterase; Provisional
Probab=99.83 E-value=7.3e-19 Score=185.43 Aligned_cols=219 Identities=19% Similarity=0.220 Sum_probs=145.9
Q ss_pred EEEEEEEcCCCCCCCCCCCccEEEEeCCCCCcCcCCCCcccCCCCCCCCccchHHHHHHHcCcEEEEcCCCCCCCCCChh
Q 002209 651 QLSATLYLPPGYDPSKDGPLPCLFWSYPGEFKSKDAAGQVRGSPNEFPRIGSTSVLLWLARGFAILGGPTTPIIGEGDEE 730 (953)
Q Consensus 651 ~~~~~l~~P~~~~~~~~~~~P~vv~~hGg~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~G~~V~~~~~~~~~G~G~~~ 730 (953)
.+..+.|.|.+ .. +++.|+||++||.+.. ... ....+..|+++||.|+.++++ |+|.+.
T Consensus 11 ~~~~~~~~p~~-~~--~~~~p~vv~~HG~~~~-----------~~~----~~~~~~~l~~~G~~v~~~d~~---g~G~~~ 69 (249)
T PRK10566 11 GIEVLHAFPAG-QR--DTPLPTVFFYHGFTSS-----------KLV----YSYFAVALAQAGFRVIMPDAP---MHGARF 69 (249)
T ss_pred CcceEEEcCCC-CC--CCCCCEEEEeCCCCcc-----------cch----HHHHHHHHHhCCCEEEEecCC---cccccC
Confidence 34567777864 11 2358999999995311 011 123567788999999996664 444321
Q ss_pred hh------hh---hHHHHHHHHHHHHHHHHHcCCCCCCcEEEEEeChHHHHHHHHHHhCCCcccEEEEccc--CCCC---
Q 002209 731 AN------DR---FVEQLVACAEAAVEEVVRRGVAHPSKIAVGGHSYGAFMTANLLAHAPHLFCCGIARSG--AYNR--- 796 (953)
Q Consensus 731 ~~------~~---~~~~~~~D~~~~~~~l~~~~~~d~~~i~l~G~S~GG~~a~~~a~~~p~~~~a~v~~~~--~~d~--- 796 (953)
.. .. .....++|+.++++++.+++.+|.++|+++|||+||++++.++.++|+ +++++.+.+ .+..
T Consensus 70 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~i~v~G~S~Gg~~al~~~~~~~~-~~~~~~~~~~~~~~~~~~ 148 (249)
T PRK10566 70 SGDEARRLNHFWQILLQNMQEFPTLRAAIREEGWLLDDRLAVGGASMGGMTALGIMARHPW-VKCVASLMGSGYFTSLAR 148 (249)
T ss_pred CCccccchhhHHHHHHHHHHHHHHHHHHHHhcCCcCccceeEEeecccHHHHHHHHHhCCC-eeEEEEeeCcHHHHHHHH
Confidence 10 11 123456788888999988888899999999999999999999999876 444443322 1110
Q ss_pred CCCCcCcc-cc--cchhhhhHHHHHhcCcccccCCC-CCcEEEEEeCCCCCCCCchHHHHHHHHHHHhCCCc--EEEEEe
Q 002209 797 TLTPFGFQ-NE--DRTLWEATSTYVEMSPFMSANKL-KKPILLVHGEEDNNSGTLTMQSDRFFNALKGHGAL--CRLVIL 870 (953)
Q Consensus 797 ~~~~~~~~-~~--~~~~~~~~~~~~~~sp~~~~~~i-~~P~Li~~G~~D~~v~~~~~~~~~~~~~l~~~g~~--~~~~~~ 870 (953)
...+.... .. .....+....+..+++...+.++ ++|+|++||++|.+|| +.++.+++++++.+|.+ ++++.+
T Consensus 149 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~P~Lii~G~~D~~v~--~~~~~~l~~~l~~~g~~~~~~~~~~ 226 (249)
T PRK10566 149 TLFPPLIPETAAQQAEFNNIVAPLAEWEVTHQLEQLADRPLLLWHGLADDVVP--AAESLRLQQALRERGLDKNLTCLWE 226 (249)
T ss_pred HhcccccccccccHHHHHHHHHHHhhcChhhhhhhcCCCCEEEEEcCCCCcCC--HHHHHHHHHHHHhcCCCcceEEEec
Confidence 00000000 00 00111111223344555566676 6899999999999999 99999999999988864 788899
Q ss_pred CCCCccCCCcccHHHHHHHHHHHHHHhc
Q 002209 871 PFESHGYAARESIMHVLWETDRWLQKYC 898 (953)
Q Consensus 871 ~~~~H~~~~~~~~~~~~~~i~~fl~~~l 898 (953)
++++|.+. ...++.+.+||+++|
T Consensus 227 ~~~~H~~~-----~~~~~~~~~fl~~~~ 249 (249)
T PRK10566 227 PGVRHRIT-----PEALDAGVAFFRQHL 249 (249)
T ss_pred CCCCCccC-----HHHHHHHHHHHHhhC
Confidence 99999874 356789999999875
No 32
>PRK13604 luxD acyl transferase; Provisional
Probab=99.82 E-value=5.1e-19 Score=183.21 Aligned_cols=205 Identities=12% Similarity=0.049 Sum_probs=142.9
Q ss_pred EEcCCCcEEEEEEEcCCCCCCCCCCCccEEEEeCCCCCcCcCCCCcccCCCCCCCCccchHHHHHHHcCcEEEEcCCCCC
Q 002209 644 YQRKDGVQLSATLYLPPGYDPSKDGPLPCLFWSYPGEFKSKDAAGQVRGSPNEFPRIGSTSVLLWLARGFAILGGPTTPI 723 (953)
Q Consensus 644 ~~~~dg~~~~~~l~~P~~~~~~~~~~~P~vv~~hGg~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~G~~V~~~~~~~~ 723 (953)
+...+|..|.+|+..|++.. ..+.++||++||-.. .. .....++.+|+++||+|+. +|.
T Consensus 14 ~~~~dG~~L~Gwl~~P~~~~---~~~~~~vIi~HGf~~------------~~---~~~~~~A~~La~~G~~vLr---fD~ 72 (307)
T PRK13604 14 ICLENGQSIRVWETLPKENS---PKKNNTILIASGFAR------------RM---DHFAGLAEYLSSNGFHVIR---YDS 72 (307)
T ss_pred EEcCCCCEEEEEEEcCcccC---CCCCCEEEEeCCCCC------------Ch---HHHHHHHHHHHHCCCEEEE---ecC
Confidence 56679999999999997522 234789999999411 00 1134567889999999999 554
Q ss_pred CCC-CChhhhh--hhHHHHHHHHHHHHHHHHHcCCCCCCcEEEEEeChHHHHHHHHHHhCCCcccEEEEcccCCCCCC--
Q 002209 724 IGE-GDEEAND--RFVEQLVACAEAAVEEVVRRGVAHPSKIAVGGHSYGAFMTANLLAHAPHLFCCGIARSGAYNRTL-- 798 (953)
Q Consensus 724 ~G~-G~~~~~~--~~~~~~~~D~~~~~~~l~~~~~~d~~~i~l~G~S~GG~~a~~~a~~~p~~~~a~v~~~~~~d~~~-- 798 (953)
+|. |.|.+.. ........|+.++++|+.++. .++|+|+||||||.+++.+|... .++++|+.+|+.+...
T Consensus 73 rg~~GeS~G~~~~~t~s~g~~Dl~aaid~lk~~~---~~~I~LiG~SmGgava~~~A~~~--~v~~lI~~sp~~~l~d~l 147 (307)
T PRK13604 73 LHHVGLSSGTIDEFTMSIGKNSLLTVVDWLNTRG---INNLGLIAASLSARIAYEVINEI--DLSFLITAVGVVNLRDTL 147 (307)
T ss_pred CCCCCCCCCccccCcccccHHHHHHHHHHHHhcC---CCceEEEEECHHHHHHHHHhcCC--CCCEEEEcCCcccHHHHH
Confidence 444 5553321 112345799999999998863 46899999999999987666644 3999999999987220
Q ss_pred -----C-----CcCcc-cc----c-----chhhhhHHH---HHhcCcccccCCCCCcEEEEEeCCCCCCCCchHHHHHHH
Q 002209 799 -----T-----PFGFQ-NE----D-----RTLWEATST---YVEMSPFMSANKLKKPILLVHGEEDNNSGTLTMQSDRFF 855 (953)
Q Consensus 799 -----~-----~~~~~-~~----~-----~~~~~~~~~---~~~~sp~~~~~~i~~P~Li~~G~~D~~v~~~~~~~~~~~ 855 (953)
. ++... .. . ..+...... ....+|++.+++++.|+|++||+.|..|| ++.+++++
T Consensus 148 ~~~~~~~~~~~p~~~lp~~~d~~g~~l~~~~f~~~~~~~~~~~~~s~i~~~~~l~~PvLiIHG~~D~lVp--~~~s~~l~ 225 (307)
T PRK13604 148 ERALGYDYLSLPIDELPEDLDFEGHNLGSEVFVTDCFKHGWDTLDSTINKMKGLDIPFIAFTANNDSWVK--QSEVIDLL 225 (307)
T ss_pred HHhhhcccccCcccccccccccccccccHHHHHHHHHhcCccccccHHHHHhhcCCCEEEEEcCCCCccC--HHHHHHHH
Confidence 0 00000 00 0 011111000 11245667788899999999999999999 99999999
Q ss_pred HHHHhCCCcEEEEEeCCCCccCC
Q 002209 856 NALKGHGALCRLVILPFESHGYA 878 (953)
Q Consensus 856 ~~l~~~g~~~~~~~~~~~~H~~~ 878 (953)
++++. .+++++++||++|.+.
T Consensus 226 e~~~s--~~kkl~~i~Ga~H~l~ 246 (307)
T PRK13604 226 DSIRS--EQCKLYSLIGSSHDLG 246 (307)
T ss_pred HHhcc--CCcEEEEeCCCccccC
Confidence 98764 3579999999999985
No 33
>PF05448 AXE1: Acetyl xylan esterase (AXE1); InterPro: IPR008391 This family consists of several bacterial acetyl xylan esterase proteins. Acetyl xylan esterases are enzymes that hydrolyse the ester linkages of the acetyl groups in position 2 and/or 3 of the xylose moieties of natural acetylated xylan from hardwood. These enzymes are one of the accessory enzymes which are part of the xylanolytic system, together with xylanases, beta-xylosidases, alpha-arabinofuranosidases and methylglucuronidases; these are all required for the complete hydrolysis of xylan [].; PDB: 1VLQ_H 3M81_E 3M82_D 3M83_C 3FCY_A 1ODS_F 1ODT_C 1L7A_A 3FYT_A 2XLB_F ....
Probab=99.81 E-value=1.7e-18 Score=184.76 Aligned_cols=233 Identities=19% Similarity=0.159 Sum_probs=155.2
Q ss_pred CCCceEEEEEEcCCCcEEEEEEEcCCCCCCCCCCCccEEEEeCCCCCcCcCCCCcccCCCCCCCCccchHHHHHHHcCcE
Q 002209 635 ASLQKELIKYQRKDGVQLSATLYLPPGYDPSKDGPLPCLFWSYPGEFKSKDAAGQVRGSPNEFPRIGSTSVLLWLARGFA 714 (953)
Q Consensus 635 ~~~~~~~~~~~~~dg~~~~~~l~~P~~~~~~~~~~~P~vv~~hGg~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~G~~ 714 (953)
....+..++|.+.+|..|.|++++|.+. ++++|+||.+||.... .........|+.+||+
T Consensus 52 ~~~~vy~v~f~s~~g~~V~g~l~~P~~~----~~~~Pavv~~hGyg~~----------------~~~~~~~~~~a~~G~~ 111 (320)
T PF05448_consen 52 PGVEVYDVSFESFDGSRVYGWLYRPKNA----KGKLPAVVQFHGYGGR----------------SGDPFDLLPWAAAGYA 111 (320)
T ss_dssp SSEEEEEEEEEEGGGEEEEEEEEEES-S----SSSEEEEEEE--TT------------------GGGHHHHHHHHHTT-E
T ss_pred CCEEEEEEEEEccCCCEEEEEEEecCCC----CCCcCEEEEecCCCCC----------------CCCcccccccccCCeE
Confidence 3456788999999999999999999842 3569999999995211 0112234468999999
Q ss_pred EEEcCCCCCCCCC------------------Chh-hhhhhHHHHHHHHHHHHHHHHHcCCCCCCcEEEEEeChHHHHHHH
Q 002209 715 ILGGPTTPIIGEG------------------DEE-ANDRFVEQLVACAEAAVEEVVRRGVAHPSKIAVGGHSYGAFMTAN 775 (953)
Q Consensus 715 V~~~~~~~~~G~G------------------~~~-~~~~~~~~~~~D~~~~~~~l~~~~~~d~~~i~l~G~S~GG~~a~~ 775 (953)
|+.++.+|..|.. ... ....++...+.|+..++++|.+++.+|++||+++|.|+||.+++.
T Consensus 112 vl~~d~rGqg~~~~d~~~~~~~~~~g~~~~g~~~~~e~~yyr~~~~D~~ravd~l~slpevD~~rI~v~G~SqGG~lal~ 191 (320)
T PF05448_consen 112 VLAMDVRGQGGRSPDYRGSSGGTLKGHITRGIDDNPEDYYYRRVYLDAVRAVDFLRSLPEVDGKRIGVTGGSQGGGLALA 191 (320)
T ss_dssp EEEE--TTTSSSS-B-SSBSSS-SSSSTTTTTTS-TTT-HHHHHHHHHHHHHHHHHTSTTEEEEEEEEEEETHHHHHHHH
T ss_pred EEEecCCCCCCCCCCccccCCCCCccHHhcCccCchHHHHHHHHHHHHHHHHHHHHhCCCcCcceEEEEeecCchHHHHH
Confidence 9997776654311 111 123356678899999999999999999999999999999999999
Q ss_pred HHHhCCCcccEEEEcccCCCCCC-----C--CcCcccccch-------h---hhhHHHHHhcCcccccCCCCCcEEEEEe
Q 002209 776 LLAHAPHLFCCGIARSGAYNRTL-----T--PFGFQNEDRT-------L---WEATSTYVEMSPFMSANKLKKPILLVHG 838 (953)
Q Consensus 776 ~a~~~p~~~~a~v~~~~~~d~~~-----~--~~~~~~~~~~-------~---~~~~~~~~~~sp~~~~~~i~~P~Li~~G 838 (953)
+++.+ ++|+++++..|++...- . ...+...... . -+..+.+.-++..+.+.+|++|+|+..|
T Consensus 192 ~aaLd-~rv~~~~~~vP~l~d~~~~~~~~~~~~~y~~~~~~~~~~d~~~~~~~~v~~~L~Y~D~~nfA~ri~~pvl~~~g 270 (320)
T PF05448_consen 192 AAALD-PRVKAAAADVPFLCDFRRALELRADEGPYPEIRRYFRWRDPHHEREPEVFETLSYFDAVNFARRIKCPVLFSVG 270 (320)
T ss_dssp HHHHS-ST-SEEEEESESSSSHHHHHHHT--STTTHHHHHHHHHHSCTHCHHHHHHHHHHTT-HHHHGGG--SEEEEEEE
T ss_pred HHHhC-ccccEEEecCCCccchhhhhhcCCccccHHHHHHHHhccCCCcccHHHHHHHHhhhhHHHHHHHcCCCEEEEEe
Confidence 99999 47999999988643110 0 0111100000 0 0112334456777889999999999999
Q ss_pred CCCCCCCCchHHHHHHHHHHHhCCCcEEEEEeCCCCccCCCcccHHHHHHHHHHHHHHh
Q 002209 839 EEDNNSGTLTMQSDRFFNALKGHGALCRLVILPFESHGYAARESIMHVLWETDRWLQKY 897 (953)
Q Consensus 839 ~~D~~v~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~H~~~~~~~~~~~~~~i~~fl~~~ 897 (953)
-.|.+|| +......|+++.. ++++++||..+|.... ....++.++||.++
T Consensus 271 l~D~~cP--P~t~fA~yN~i~~---~K~l~vyp~~~He~~~----~~~~~~~~~~l~~~ 320 (320)
T PF05448_consen 271 LQDPVCP--PSTQFAAYNAIPG---PKELVVYPEYGHEYGP----EFQEDKQLNFLKEH 320 (320)
T ss_dssp TT-SSS---HHHHHHHHCC--S---SEEEEEETT--SSTTH----HHHHHHHHHHHHH-
T ss_pred cCCCCCC--chhHHHHHhccCC---CeeEEeccCcCCCchh----hHHHHHHHHHHhcC
Confidence 9999998 9888888888865 4899999999997642 23356788998874
No 34
>TIGR02821 fghA_ester_D S-formylglutathione hydrolase. This model describes a protein family from bacteria, yeast, and human, with a conserved critical role in formaldehyde detoxification as S-formylglutathione hydrolase (EC 3.1.2.12). Members in eukaryotes such as the human protein are better known as esterase D (EC 3.1.1.1), an enzyme with broad specificity, although S-formylglutathione hydrolase has now been demonstrated as well.
Probab=99.80 E-value=3.5e-18 Score=181.77 Aligned_cols=237 Identities=16% Similarity=0.209 Sum_probs=149.9
Q ss_pred eEEEEEEcC-CCcEEEEEEEcCCCCCCCCCCCccEEEEeCCCCCcCcCCCCcccCCCCCCCCccchHHHHH-HHcCcEEE
Q 002209 639 KELIKYQRK-DGVQLSATLYLPPGYDPSKDGPLPCLFWSYPGEFKSKDAAGQVRGSPNEFPRIGSTSVLLW-LARGFAIL 716 (953)
Q Consensus 639 ~~~~~~~~~-dg~~~~~~l~~P~~~~~~~~~~~P~vv~~hGg~~~~~~~~~~~~~~~~~~~~~~~~~~~~l-a~~G~~V~ 716 (953)
.+.+++.+. -+.++.+.+|+|+++.. +++|+|+++||.+... ..+.. ......+ ++.||+|+
T Consensus 13 ~~~~~~~s~~~~~~~~~~v~~P~~~~~---~~~P~vvllHG~~~~~-----------~~~~~--~~~~~~la~~~g~~Vv 76 (275)
T TIGR02821 13 QGFYRHKSETCGVPMTFGVFLPPQAAA---GPVPVLWYLSGLTCTH-----------ENFMI--KAGAQRFAAEHGLALV 76 (275)
T ss_pred EEEEEEeccccCCceEEEEEcCCCccC---CCCCEEEEccCCCCCc-----------cHHHh--hhHHHHHHhhcCcEEE
Confidence 344555443 46678899999987533 2489999999963211 11110 0112234 45799999
Q ss_pred EcCCCCCCCCCCh-------------hh----hhhh--HHHHHHHHHHHHHH-HHHcCCCCCCcEEEEEeChHHHHHHHH
Q 002209 717 GGPTTPIIGEGDE-------------EA----NDRF--VEQLVACAEAAVEE-VVRRGVAHPSKIAVGGHSYGAFMTANL 776 (953)
Q Consensus 717 ~~~~~~~~G~G~~-------------~~----~~~~--~~~~~~D~~~~~~~-l~~~~~~d~~~i~l~G~S~GG~~a~~~ 776 (953)
+++.. .+|.|.+ +. .... .......+.+.+.. +.+...+|.++++|+|+||||++++.+
T Consensus 77 ~Pd~~-~~g~~~~~~~~~w~~g~~~~~~~d~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~G~S~GG~~a~~~ 155 (275)
T TIGR02821 77 APDTS-PRGTGIAGEDDAWDFGKGAGFYVDATEEPWSQHYRMYSYIVQELPALVAAQFPLDGERQGITGHSMGGHGALVI 155 (275)
T ss_pred EeCCC-CCcCCCCCCcccccccCCccccccCCcCcccccchHHHHHHHHHHHHHHhhCCCCCCceEEEEEChhHHHHHHH
Confidence 98762 2222211 00 0000 00112222222222 333345788999999999999999999
Q ss_pred HHhCCCcccEEEEcccCCCCCCCCcCcccccchhhhhHHHHHhcCcccccCC--CCCcEEEEEeCCCCCCCCch-HHHHH
Q 002209 777 LAHAPHLFCCGIARSGAYNRTLTPFGFQNEDRTLWEATSTYVEMSPFMSANK--LKKPILLVHGEEDNNSGTLT-MQSDR 853 (953)
Q Consensus 777 a~~~p~~~~a~v~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~sp~~~~~~--i~~P~Li~~G~~D~~v~~~~-~~~~~ 853 (953)
+.++|+.|+++++++|+++.....+...........+.+.+...+|...+.+ ...|+|+.||+.|..|+ . .++..
T Consensus 156 a~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~plli~~G~~D~~v~--~~~~~~~ 233 (275)
T TIGR02821 156 ALKNPDRFKSVSAFAPIVAPSRCPWGQKAFSAYLGADEAAWRSYDASLLVADGGRHSTILIDQGTADQFLD--EQLRPDA 233 (275)
T ss_pred HHhCcccceEEEEECCccCcccCcchHHHHHHHhcccccchhhcchHHHHhhcccCCCeeEeecCCCcccC--ccccHHH
Confidence 9999999999999999977543222110001111111222334455444333 46799999999999998 7 57889
Q ss_pred HHHHHHhCCCcEEEEEeCCCCccCCCcccHHHHHHHHHHHHHHh
Q 002209 854 FFNALKGHGALCRLVILPFESHGYAARESIMHVLWETDRWLQKY 897 (953)
Q Consensus 854 ~~~~l~~~g~~~~~~~~~~~~H~~~~~~~~~~~~~~i~~fl~~~ 897 (953)
+.+++++.++++++..+||++|.|.. ....++..++|+.++
T Consensus 234 ~~~~l~~~g~~v~~~~~~g~~H~f~~---~~~~~~~~~~~~~~~ 274 (275)
T TIGR02821 234 FEQACRAAGQALTLRRQAGYDHSYYF---IASFIADHLRHHAER 274 (275)
T ss_pred HHHHHHHcCCCeEEEEeCCCCccchh---HHHhHHHHHHHHHhh
Confidence 99999999999999999999999843 345667778887765
No 35
>PRK05077 frsA fermentation/respiration switch protein; Reviewed
Probab=99.80 E-value=5.7e-18 Score=189.13 Aligned_cols=230 Identities=17% Similarity=0.126 Sum_probs=153.4
Q ss_pred CCceEEEEEEcCCCcEEEEEEEcCCCCCCCCCCCccEEEEeCCCCCcCcCCCCcccCCCCCCCCccchHHHHHHHcCcEE
Q 002209 636 SLQKELIKYQRKDGVQLSATLYLPPGYDPSKDGPLPCLFWSYPGEFKSKDAAGQVRGSPNEFPRIGSTSVLLWLARGFAI 715 (953)
Q Consensus 636 ~~~~~~~~~~~~dg~~~~~~l~~P~~~~~~~~~~~P~vv~~hGg~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~G~~V 715 (953)
....+.++++..+|..+++++++|+. .++.|+||+.||.. +.. ..........|+++||+|
T Consensus 165 ~~~~e~v~i~~~~g~~l~g~l~~P~~-----~~~~P~Vli~gG~~------------~~~--~~~~~~~~~~La~~Gy~v 225 (414)
T PRK05077 165 PGELKELEFPIPGGGPITGFLHLPKG-----DGPFPTVLVCGGLD------------SLQ--TDYYRLFRDYLAPRGIAM 225 (414)
T ss_pred CCceEEEEEEcCCCcEEEEEEEECCC-----CCCccEEEEeCCcc------------cch--hhhHHHHHHHHHhCCCEE
Confidence 34578999998888899999999973 23589988766631 000 001123456788999999
Q ss_pred EEcCCCCCCCCCChhhhhhhHHHHHHHHHHHHHHHHHcCCCCCCcEEEEEeChHHHHHHHHHHhCCCcccEEEEcccCCC
Q 002209 716 LGGPTTPIIGEGDEEANDRFVEQLVACAEAAVEEVVRRGVAHPSKIAVGGHSYGAFMTANLLAHAPHLFCCGIARSGAYN 795 (953)
Q Consensus 716 ~~~~~~~~~G~G~~~~~~~~~~~~~~D~~~~~~~l~~~~~~d~~~i~l~G~S~GG~~a~~~a~~~p~~~~a~v~~~~~~d 795 (953)
+++|+ +|+|.+.... ..........+++++|.+.+.+|.+||+++|+|+||++++.++...|++++++|+++|+++
T Consensus 226 l~~D~---pG~G~s~~~~-~~~d~~~~~~avld~l~~~~~vd~~ri~l~G~S~GG~~Al~~A~~~p~ri~a~V~~~~~~~ 301 (414)
T PRK05077 226 LTIDM---PSVGFSSKWK-LTQDSSLLHQAVLNALPNVPWVDHTRVAAFGFRFGANVAVRLAYLEPPRLKAVACLGPVVH 301 (414)
T ss_pred EEECC---CCCCCCCCCC-ccccHHHHHHHHHHHHHhCcccCcccEEEEEEChHHHHHHHHHHhCCcCceEEEEECCccc
Confidence 99555 5666653211 0011222235788999988889999999999999999999999999889999999998865
Q ss_pred CCCCCcCcccc------------cchhhhhHH----HHHhcCcc--c-ccCCCCCcEEEEEeCCCCCCCCchHHHHHHHH
Q 002209 796 RTLTPFGFQNE------------DRTLWEATS----TYVEMSPF--M-SANKLKKPILLVHGEEDNNSGTLTMQSDRFFN 856 (953)
Q Consensus 796 ~~~~~~~~~~~------------~~~~~~~~~----~~~~~sp~--~-~~~~i~~P~Li~~G~~D~~v~~~~~~~~~~~~ 856 (953)
........... .+......+ .+..++.. . ...++++|+|++||++|.+|| +++++.+.+
T Consensus 302 ~~~~~~~~~~~~p~~~~~~la~~lg~~~~~~~~l~~~l~~~sl~~~~~l~~~i~~PvLiI~G~~D~ivP--~~~a~~l~~ 379 (414)
T PRK05077 302 TLLTDPKRQQQVPEMYLDVLASRLGMHDASDEALRVELNRYSLKVQGLLGRRCPTPMLSGYWKNDPFSP--EEDSRLIAS 379 (414)
T ss_pred hhhcchhhhhhchHHHHHHHHHHhCCCCCChHHHHHHhhhccchhhhhhccCCCCcEEEEecCCCCCCC--HHHHHHHHH
Confidence 22111000000 000000111 11112211 1 125689999999999999998 888887655
Q ss_pred HHHhCCCcEEEEEeCCCCccCCCcccHHHHHHHHHHHHHHhc
Q 002209 857 ALKGHGALCRLVILPFESHGYAARESIMHVLWETDRWLQKYC 898 (953)
Q Consensus 857 ~l~~~g~~~~~~~~~~~~H~~~~~~~~~~~~~~i~~fl~~~l 898 (953)
... ..+++++|+. |.+ +....++..+.+||.++|
T Consensus 380 ~~~----~~~l~~i~~~-~~~---e~~~~~~~~i~~wL~~~l 413 (414)
T PRK05077 380 SSA----DGKLLEIPFK-PVY---RNFDKALQEISDWLEDRL 413 (414)
T ss_pred hCC----CCeEEEccCC-Ccc---CCHHHHHHHHHHHHHHHh
Confidence 443 3578899986 433 456788999999999876
No 36
>PLN02442 S-formylglutathione hydrolase
Probab=99.80 E-value=4.2e-18 Score=181.35 Aligned_cols=239 Identities=21% Similarity=0.232 Sum_probs=149.7
Q ss_pred ceEEEEEEc-CCCcEEEEEEEcCCCCCCCCCCCccEEEEeCCCCCcCcCCCCcccCCCCCCCCccchHHHHHHHcCcEEE
Q 002209 638 QKELIKYQR-KDGVQLSATLYLPPGYDPSKDGPLPCLFWSYPGEFKSKDAAGQVRGSPNEFPRIGSTSVLLWLARGFAIL 716 (953)
Q Consensus 638 ~~~~~~~~~-~dg~~~~~~l~~P~~~~~~~~~~~P~vv~~hGg~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~G~~V~ 716 (953)
..+.+++.+ .-|..+.+.+|+|+. .++ .++|+|+++||+.... ..+... ......++..||+|+
T Consensus 17 ~~~~~~~~s~~l~~~~~~~vy~P~~-~~~--~~~Pvv~~lHG~~~~~-----------~~~~~~-~~~~~~~~~~g~~Vv 81 (283)
T PLN02442 17 FNRRYKHFSSTLGCSMTFSVYFPPA-SDS--GKVPVLYWLSGLTCTD-----------ENFIQK-SGAQRAAAARGIALV 81 (283)
T ss_pred EEEEEEEeccccCCceEEEEEcCCc-ccC--CCCCEEEEecCCCcCh-----------HHHHHh-hhHHHHHhhcCeEEE
Confidence 456666665 356789999999984 222 3599999999963211 111110 112334567899999
Q ss_pred EcCCCCC--C----------CCCChhh----h-----hhhHHHHHHHHHHHHHHHHHcCCCCCCcEEEEEeChHHHHHHH
Q 002209 717 GGPTTPI--I----------GEGDEEA----N-----DRFVEQLVACAEAAVEEVVRRGVAHPSKIAVGGHSYGAFMTAN 775 (953)
Q Consensus 717 ~~~~~~~--~----------G~G~~~~----~-----~~~~~~~~~D~~~~~~~l~~~~~~d~~~i~l~G~S~GG~~a~~ 775 (953)
.++.... . |.|.++. . ..+.....+++...++... ..+|.++++|+|+||||++|+.
T Consensus 82 ~pd~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~~~--~~~~~~~~~i~G~S~GG~~a~~ 159 (283)
T PLN02442 82 APDTSPRGLNVEGEADSWDFGVGAGFYLNATQEKWKNWRMYDYVVKELPKLLSDNF--DQLDTSRASIFGHSMGGHGALT 159 (283)
T ss_pred ecCCCCCCCCCCCCccccccCCCcceeeccccCCCcccchhhhHHHHHHHHHHHHH--HhcCCCceEEEEEChhHHHHHH
Confidence 9775321 1 1111100 0 0112223444444443332 2367889999999999999999
Q ss_pred HHHhCCCcccEEEEcccCCCCCCCCcCcccccchhhhhHHHHHhc---CcccccCCCCCcEEEEEeCCCCCCCCchH-HH
Q 002209 776 LLAHAPHLFCCGIARSGAYNRTLTPFGFQNEDRTLWEATSTYVEM---SPFMSANKLKKPILLVHGEEDNNSGTLTM-QS 851 (953)
Q Consensus 776 ~a~~~p~~~~a~v~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~---sp~~~~~~i~~P~Li~~G~~D~~v~~~~~-~~ 851 (953)
++.++|++|+++++.+|+++.....+.............+.+.++ +++..+...++|+|++||++|..|+ .. ++
T Consensus 160 ~a~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~d~~~~~~~~~~~~~pvli~~G~~D~~v~--~~~~s 237 (283)
T PLN02442 160 IYLKNPDKYKSVSAFAPIANPINCPWGQKAFTNYLGSDKADWEEYDATELVSKFNDVSATILIDQGEADKFLK--EQLLP 237 (283)
T ss_pred HHHhCchhEEEEEEECCccCcccCchhhHHHHHHcCCChhhHHHcChhhhhhhccccCCCEEEEECCCCcccc--ccccH
Confidence 999999999999999998875422221110111111112223333 4445556678999999999999987 53 58
Q ss_pred HHHHHHHHhCCCcEEEEEeCCCCccCCCcccHHHHHHHHHHHHHHhc
Q 002209 852 DRFFNALKGHGALCRLVILPFESHGYAARESIMHVLWETDRWLQKYC 898 (953)
Q Consensus 852 ~~~~~~l~~~g~~~~~~~~~~~~H~~~~~~~~~~~~~~i~~fl~~~l 898 (953)
+.+++++++.|.++++.++|+++|.+. ....++++.+.|..+++
T Consensus 238 ~~~~~~l~~~g~~~~~~~~pg~~H~~~---~~~~~i~~~~~~~~~~~ 281 (283)
T PLN02442 238 ENFEEACKEAGAPVTLRLQPGYDHSYF---FIATFIDDHINHHAQAL 281 (283)
T ss_pred HHHHHHHHHcCCCeEEEEeCCCCccHH---HHHHHHHHHHHHHHHHh
Confidence 899999999999999999999999874 22333444445554443
No 37
>PF01738 DLH: Dienelactone hydrolase family; InterPro: IPR002925 Dienelactone hydrolases play a crucial role in chlorocatechol degradation via the modified ortho cleavage pathway. Enzymes induced in 4-fluorobenzoate-utilizing bacteria have been classified into three groups on the basis of their specificity towards cis- and trans-dienelactone []. Some proteins contain repeated small fragments of this domain (for example rat kan-1 protein).; GO: 0016787 hydrolase activity; PDB: 1GGV_A 1ZIY_A 1ZI6_A 1ZIC_A 1ZJ5_A 1ZI8_A 1ZJ4_A 1ZI9_A 1ZIX_A 3F67_A.
Probab=99.80 E-value=1.4e-18 Score=178.75 Aligned_cols=201 Identities=22% Similarity=0.234 Sum_probs=142.0
Q ss_pred EEEEEEcCCCCCCCCCCCccEEEEeCCCCCcCcCCCCcccCCCCCCCCccchHHHHHHHcCcEEEEcCCCCCCC--CCCh
Q 002209 652 LSATLYLPPGYDPSKDGPLPCLFWSYPGEFKSKDAAGQVRGSPNEFPRIGSTSVLLWLARGFAILGGPTTPIIG--EGDE 729 (953)
Q Consensus 652 ~~~~l~~P~~~~~~~~~~~P~vv~~hGg~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~G~~V~~~~~~~~~G--~G~~ 729 (953)
+.+++..|++ .++.|.||++|+.. | +.......+..|+++||.|+.+|.++..+ ....
T Consensus 1 ~~ay~~~P~~-----~~~~~~Vvv~~d~~------------G---~~~~~~~~ad~lA~~Gy~v~~pD~f~~~~~~~~~~ 60 (218)
T PF01738_consen 1 IDAYVARPEG-----GGPRPAVVVIHDIF------------G---LNPNIRDLADRLAEEGYVVLAPDLFGGRGAPPSDP 60 (218)
T ss_dssp EEEEEEEETT-----SSSEEEEEEE-BTT------------B---S-HHHHHHHHHHHHTT-EEEEE-CCCCTS--CCCH
T ss_pred CeEEEEeCCC-----CCCCCEEEEEcCCC------------C---CchHHHHHHHHHHhcCCCEEecccccCCCCCccch
Confidence 4689999986 24589999999842 1 11122345778899999999999887666 1111
Q ss_pred hhhh-h-------hHHHHHHHHHHHHHHHHHcCCCCCCcEEEEEeChHHHHHHHHHHhCCCcccEEEEcccCCCCCCCCc
Q 002209 730 EAND-R-------FVEQLVACAEAAVEEVVRRGVAHPSKIAVGGHSYGAFMTANLLAHAPHLFCCGIARSGAYNRTLTPF 801 (953)
Q Consensus 730 ~~~~-~-------~~~~~~~D~~~~~~~l~~~~~~d~~~i~l~G~S~GG~~a~~~a~~~p~~~~a~v~~~~~~d~~~~~~ 801 (953)
.... . ..+....|+.+++++|.+++.++.+||+++|+|+||.+++.++.+. +.++|+|+..|...
T Consensus 61 ~~~~~~~~~~~~~~~~~~~~~~~aa~~~l~~~~~~~~~kig~vGfc~GG~~a~~~a~~~-~~~~a~v~~yg~~~------ 133 (218)
T PF01738_consen 61 EEAFAAMRELFAPRPEQVAADLQAAVDYLRAQPEVDPGKIGVVGFCWGGKLALLLAARD-PRVDAAVSFYGGSP------ 133 (218)
T ss_dssp HCHHHHHHHCHHHSHHHHHHHHHHHHHHHHCTTTCEEEEEEEEEETHHHHHHHHHHCCT-TTSSEEEEES-SSS------
T ss_pred hhHHHHHHHHHhhhHHHHHHHHHHHHHHHHhccccCCCcEEEEEEecchHHhhhhhhhc-cccceEEEEcCCCC------
Confidence 1111 1 1245678889999999999888899999999999999999998887 67999999888100
Q ss_pred CcccccchhhhhHHHHHhcCcccccCCCCCcEEEEEeCCCCCCCCchHHHHHHHHHHHhCCCcEEEEEeCCCCccCCCcc
Q 002209 802 GFQNEDRTLWEATSTYVEMSPFMSANKLKKPILLVHGEEDNNSGTLTMQSDRFFNALKGHGALCRLVILPFESHGYAARE 881 (953)
Q Consensus 802 ~~~~~~~~~~~~~~~~~~~sp~~~~~~i~~P~Li~~G~~D~~v~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~H~~~~~~ 881 (953)
...+.....++++|+|+++|++|..++ .+...++.+++++.+.++++++|||++|+|....
T Consensus 134 -----------------~~~~~~~~~~~~~P~l~~~g~~D~~~~--~~~~~~~~~~l~~~~~~~~~~~y~ga~HgF~~~~ 194 (218)
T PF01738_consen 134 -----------------PPPPLEDAPKIKAPVLILFGENDPFFP--PEEVEALEEALKAAGVDVEVHVYPGAGHGFANPS 194 (218)
T ss_dssp -----------------GGGHHHHGGG--S-EEEEEETT-TTS---HHHHHHHHHHHHCTTTTEEEEEETT--TTTTSTT
T ss_pred -----------------CCcchhhhcccCCCEeecCccCCCCCC--hHHHHHHHHHHHhcCCcEEEEECCCCcccccCCC
Confidence 011223345678999999999999998 8888999999999999999999999999996332
Q ss_pred -------cHHHHHHHHHHHHHHhc
Q 002209 882 -------SIMHVLWETDRWLQKYC 898 (953)
Q Consensus 882 -------~~~~~~~~i~~fl~~~l 898 (953)
..+..++++++||++||
T Consensus 195 ~~~~~~~aa~~a~~~~~~ff~~~L 218 (218)
T PF01738_consen 195 RPPYDPAAAEDAWQRTLAFFKRHL 218 (218)
T ss_dssp STT--HHHHHHHHHHHHHHHCC--
T ss_pred CcccCHHHHHHHHHHHHHHHHhcC
Confidence 34567888999998876
No 38
>PLN02385 hydrolase; alpha/beta fold family protein
Probab=99.79 E-value=1.1e-17 Score=185.11 Aligned_cols=233 Identities=15% Similarity=0.129 Sum_probs=157.6
Q ss_pred EEEEEEcCCCcEEEEEEEcCCCCCCCCCCCccEEEEeCCCCCcCcCCCCcccCCCCCCCCccchHHHHHHHcCcEEEEcC
Q 002209 640 ELIKYQRKDGVQLSATLYLPPGYDPSKDGPLPCLFWSYPGEFKSKDAAGQVRGSPNEFPRIGSTSVLLWLARGFAILGGP 719 (953)
Q Consensus 640 ~~~~~~~~dg~~~~~~l~~P~~~~~~~~~~~P~vv~~hGg~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~G~~V~~~~ 719 (953)
+...+.+.+|.++.+..+.|++ ..+.|+||++||.... ...+.......|+++||.|++
T Consensus 62 ~~~~~~~~~g~~l~~~~~~p~~-----~~~~~~iv~lHG~~~~--------------~~~~~~~~~~~l~~~g~~v~~-- 120 (349)
T PLN02385 62 EESYEVNSRGVEIFSKSWLPEN-----SRPKAAVCFCHGYGDT--------------CTFFFEGIARKIASSGYGVFA-- 120 (349)
T ss_pred eeeeEEcCCCCEEEEEEEecCC-----CCCCeEEEEECCCCCc--------------cchHHHHHHHHHHhCCCEEEE--
Confidence 3344556799999999999864 2246899999995210 000112345567889999999
Q ss_pred CCCCCCCCChhhhh---hhHHHHHHHHHHHHHHHHHcCCCCCCcEEEEEeChHHHHHHHHHHhCCCcccEEEEcccCCCC
Q 002209 720 TTPIIGEGDEEAND---RFVEQLVACAEAAVEEVVRRGVAHPSKIAVGGHSYGAFMTANLLAHAPHLFCCGIARSGAYNR 796 (953)
Q Consensus 720 ~~~~~G~G~~~~~~---~~~~~~~~D~~~~~~~l~~~~~~d~~~i~l~G~S~GG~~a~~~a~~~p~~~~a~v~~~~~~d~ 796 (953)
+|.+|+|.+.... ..+...+.|+.+.++.+......+..+++|+||||||.+++.++.++|++++++|+++|+...
T Consensus 121 -~D~~G~G~S~~~~~~~~~~~~~~~dv~~~l~~l~~~~~~~~~~~~LvGhSmGG~val~~a~~~p~~v~glVLi~p~~~~ 199 (349)
T PLN02385 121 -MDYPGFGLSEGLHGYIPSFDDLVDDVIEHYSKIKGNPEFRGLPSFLFGQSMGGAVALKVHLKQPNAWDGAILVAPMCKI 199 (349)
T ss_pred -ecCCCCCCCCCCCCCcCCHHHHHHHHHHHHHHHHhccccCCCCEEEEEeccchHHHHHHHHhCcchhhheeEecccccc
Confidence 5556888775432 235677889999988887654445568999999999999999999999999999999886431
Q ss_pred CC--CC-c-----------------Cccc-c-cchhhhh-----------------------HHHHHh-cCcccccCCCC
Q 002209 797 TL--TP-F-----------------GFQN-E-DRTLWEA-----------------------TSTYVE-MSPFMSANKLK 830 (953)
Q Consensus 797 ~~--~~-~-----------------~~~~-~-~~~~~~~-----------------------~~~~~~-~sp~~~~~~i~ 830 (953)
.. .+ . .+.. . ....+.+ .+.+.. ......+.+++
T Consensus 200 ~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~l~~i~ 279 (349)
T PLN02385 200 ADDVVPPPLVLQILILLANLLPKAKLVPQKDLAELAFRDLKKRKMAEYNVIAYKDKPRLRTAVELLRTTQEIEMQLEEVS 279 (349)
T ss_pred cccccCchHHHHHHHHHHHHCCCceecCCCccccccccCHHHHHHhhcCcceeCCCcchHHHHHHHHHHHHHHHhcccCC
Confidence 10 00 0 0000 0 0000000 000100 01123456789
Q ss_pred CcEEEEEeCCCCCCCCchHHHHHHHHHHHhCCCcEEEEEeCCCCccCCCccc---HHHHHHHHHHHHHHhc
Q 002209 831 KPILLVHGEEDNNSGTLTMQSDRFFNALKGHGALCRLVILPFESHGYAARES---IMHVLWETDRWLQKYC 898 (953)
Q Consensus 831 ~P~Li~~G~~D~~v~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~H~~~~~~~---~~~~~~~i~~fl~~~l 898 (953)
+|+||+||++|.+|| +..++++++.+... .++++++|+++|.+...+. .+.+++.+.+||++++
T Consensus 280 ~P~Lii~G~~D~vv~--~~~~~~l~~~~~~~--~~~l~~i~~~gH~l~~e~p~~~~~~v~~~i~~wL~~~~ 346 (349)
T PLN02385 280 LPLLILHGEADKVTD--PSVSKFLYEKASSS--DKKLKLYEDAYHSILEGEPDEMIFQVLDDIISWLDSHS 346 (349)
T ss_pred CCEEEEEeCCCCccC--hHHHHHHHHHcCCC--CceEEEeCCCeeecccCCChhhHHHHHHHHHHHHHHhc
Confidence 999999999999998 89999998877543 3588899999998753221 3458889999999886
No 39
>PHA02857 monoglyceride lipase; Provisional
Probab=99.78 E-value=1.8e-17 Score=177.82 Aligned_cols=223 Identities=17% Similarity=0.122 Sum_probs=153.5
Q ss_pred EEcCCCcEEEEEEEcCCCCCCCCCCCccEEEEeCCCCCcCcCCCCcccCCCCCCCCccchHHHHHHHcCcEEEEcCCCCC
Q 002209 644 YQRKDGVQLSATLYLPPGYDPSKDGPLPCLFWSYPGEFKSKDAAGQVRGSPNEFPRIGSTSVLLWLARGFAILGGPTTPI 723 (953)
Q Consensus 644 ~~~~dg~~~~~~l~~P~~~~~~~~~~~P~vv~~hGg~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~G~~V~~~~~~~~ 723 (953)
+.+.||..+.+.+|.|.. .+.|+|+++||.... ..........|+++||.|++ +|.
T Consensus 5 ~~~~~g~~l~~~~~~~~~------~~~~~v~llHG~~~~---------------~~~~~~~~~~l~~~g~~via---~D~ 60 (276)
T PHA02857 5 MFNLDNDYIYCKYWKPIT------YPKALVFISHGAGEH---------------SGRYEELAENISSLGILVFS---HDH 60 (276)
T ss_pred eecCCCCEEEEEeccCCC------CCCEEEEEeCCCccc---------------cchHHHHHHHHHhCCCEEEE---ccC
Confidence 344699999999998852 236899999995311 11123456678889999999 566
Q ss_pred CCCCChhhhh---hhHHHHHHHHHHHHHHHHHcCCCCCCcEEEEEeChHHHHHHHHHHhCCCcccEEEEcccCCCCCCCC
Q 002209 724 IGEGDEEAND---RFVEQLVACAEAAVEEVVRRGVAHPSKIAVGGHSYGAFMTANLLAHAPHLFCCGIARSGAYNRTLTP 800 (953)
Q Consensus 724 ~G~G~~~~~~---~~~~~~~~D~~~~~~~l~~~~~~d~~~i~l~G~S~GG~~a~~~a~~~p~~~~a~v~~~~~~d~~~~~ 800 (953)
+|+|.+.... ..+...+.|+..+++++.+.. ...+++|+||||||.+++.++.++|++++++|+.+|..+.....
T Consensus 61 ~G~G~S~~~~~~~~~~~~~~~d~~~~l~~~~~~~--~~~~~~lvG~S~GG~ia~~~a~~~p~~i~~lil~~p~~~~~~~~ 138 (276)
T PHA02857 61 IGHGRSNGEKMMIDDFGVYVRDVVQHVVTIKSTY--PGVPVFLLGHSMGATISILAAYKNPNLFTAMILMSPLVNAEAVP 138 (276)
T ss_pred CCCCCCCCccCCcCCHHHHHHHHHHHHHHHHhhC--CCCCEEEEEcCchHHHHHHHHHhCccccceEEEecccccccccc
Confidence 7888774321 234556788888888876543 23589999999999999999999999999999999865421100
Q ss_pred c-----------Ccccc----cchhh--h---hHHHHH-------------------h-c-CcccccCCCCCcEEEEEeC
Q 002209 801 F-----------GFQNE----DRTLW--E---ATSTYV-------------------E-M-SPFMSANKLKKPILLVHGE 839 (953)
Q Consensus 801 ~-----------~~~~~----~~~~~--~---~~~~~~-------------------~-~-sp~~~~~~i~~P~Li~~G~ 839 (953)
. .+... ....+ . ....+. . . .....+.++++|+|++||+
T Consensus 139 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~i~~Pvliv~G~ 218 (276)
T PHA02857 139 RLNLLAAKLMGIFYPNKIVGKLCPESVSRDMDEVYKYQYDPLVNHEKIKAGFASQVLKATNKVRKIIPKIKTPILILQGT 218 (276)
T ss_pred HHHHHHHHHHHHhCCCCccCCCCHhhccCCHHHHHHHhcCCCccCCCccHHHHHHHHHHHHHHHHhcccCCCCEEEEecC
Confidence 0 00000 00000 0 000000 0 0 0123456789999999999
Q ss_pred CCCCCCCchHHHHHHHHHHHhCCCcEEEEEeCCCCccCCCcc--cHHHHHHHHHHHHHHh
Q 002209 840 EDNNSGTLTMQSDRFFNALKGHGALCRLVILPFESHGYAARE--SIMHVLWETDRWLQKY 897 (953)
Q Consensus 840 ~D~~v~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~H~~~~~~--~~~~~~~~i~~fl~~~ 897 (953)
+|..+| +..+.++++.+.. ++++.++++++|...... ..+.+++.+.+||+.+
T Consensus 219 ~D~i~~--~~~~~~l~~~~~~---~~~~~~~~~~gH~~~~e~~~~~~~~~~~~~~~l~~~ 273 (276)
T PHA02857 219 NNEISD--VSGAYYFMQHANC---NREIKIYEGAKHHLHKETDEVKKSVMKEIETWIFNR 273 (276)
T ss_pred CCCcCC--hHHHHHHHHHccC---CceEEEeCCCcccccCCchhHHHHHHHHHHHHHHHh
Confidence 999998 9999998887744 368999999999886443 3678999999999886
No 40
>TIGR02800 propeller_TolB tol-pal system beta propeller repeat protein TolB. The Tol-PAL system is required for bacterial outer membrane integrity. E. coli TolB is involved in the tonB-independent uptake of group A colicins (colicins A, E1, E2, E3 and K), and is necessary for the colicins to reach their respective targets after initial binding to the bacteria. It is also involved in uptake of filamentous DNA. Study of its structure suggest that the TolB protein might be involved in the recycling of peptidoglycan or in its covalent linking with lipoproteins. The Tol-Pal system is also implicated in pathogenesis of E. coli, Haemophilus ducreyi, Salmonella enterica and Vibrio cholerae, but the mechanism(s) is unclear.
Probab=99.78 E-value=5.6e-17 Score=185.19 Aligned_cols=227 Identities=19% Similarity=0.222 Sum_probs=163.0
Q ss_pred ceEEEEccCCCCCCceeeeecCCCCCcccceEeccCCCeEEEEEeeccccCCCCcceEEEEECCCCceeecccCCCcccc
Q 002209 164 GIGIHQLFPDGKLGQEIEIQGFPDGAKLNFVTWSQDGKHLAFSIRIDAEDSSSSKLRVWVADVDTGKARPLFQSPDIYLN 243 (953)
Q Consensus 164 ~i~i~~~~~~g~~~~~~~l~~~~~~~~~~~~~wSPDG~~laf~~~~~~~~~~~~~~~l~~~d~~~g~~~~lt~~~~~~~~ 243 (953)
.||++|. +| ...+.|+.. +..+..|.|||||++|+|... .++...||++++++|+.+.++.....
T Consensus 171 ~l~~~d~--~g--~~~~~l~~~--~~~~~~p~~Spdg~~la~~~~------~~~~~~i~v~d~~~g~~~~~~~~~~~--- 235 (417)
T TIGR02800 171 ELQVADY--DG--ANPQTITRS--REPILSPAWSPDGQKLAYVSF------ESGKPEIYVQDLATGQREKVASFPGM--- 235 (417)
T ss_pred eEEEEcC--CC--CCCEEeecC--CCceecccCCCCCCEEEEEEc------CCCCcEEEEEECCCCCEEEeecCCCC---
Confidence 7899887 33 445666542 235788999999999999764 23457899999999987777654432
Q ss_pred ccccceEEecCCeEEEEEecCCCCCCCCCCCCCCCCceeecCCCccccchhhhhhcCCcchhhhhhhhccceEEEEEc-C
Q 002209 244 AIFDNFVWVNNSTLLVCTIPLLRGDPPKKPLVPLGPKMQSNEKRDIIQVRTFQDLLKDEYDEDLFDYYATTQLVLVSL-D 322 (953)
Q Consensus 244 ~~~~~~~wspDg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~l~~~~~-~ 322 (953)
...+.|+|||+.|+|+.. . + +..+||.+++ +
T Consensus 236 --~~~~~~spDg~~l~~~~~--------------------------------------~-~-------~~~~i~~~d~~~ 267 (417)
T TIGR02800 236 --NGAPAFSPDGSKLAVSLS--------------------------------------K-D-------GNPDIYVMDLDG 267 (417)
T ss_pred --ccceEECCCCCEEEEEEC--------------------------------------C-C-------CCccEEEEECCC
Confidence 447899999999988721 0 0 2357999999 7
Q ss_pred CceeEeCCC-CcccccccCCCCcEEEEEEecCCccccccCCCCCcceEEEeccCceEEEeccCCCcccCCccccccccCc
Q 002209 323 GTVKEIGPP-AVYTSLDPSPDEKYILISSIHRPYSFIVPCGRFPRQVGVWTTDGIFVRELCDLPLAEDIPIAFNSVRKGM 401 (953)
Q Consensus 323 g~~~~l~~~-~~~~~~~~SpDG~~l~~~~~~~~~~~~~~~~~~~~~i~~~d~~g~~~~~l~~~~~~~~~p~~~~~~~~~~ 401 (953)
+..+.++.. .....+.|||||++|+|.+.+.. ..+||++++++++.+.++... ...
T Consensus 268 ~~~~~l~~~~~~~~~~~~s~dg~~l~~~s~~~g----------~~~iy~~d~~~~~~~~l~~~~-------------~~~ 324 (417)
T TIGR02800 268 KQLTRLTNGPGIDTEPSWSPDGKSIAFTSDRGG----------SPQIYMMDADGGEVRRLTFRG-------------GYN 324 (417)
T ss_pred CCEEECCCCCCCCCCEEECCCCCEEEEEECCCC----------CceEEEEECCCCCEEEeecCC-------------CCc
Confidence 888888766 45568899999999999885431 237999999887777666432 122
Q ss_pred cceeeccCCCCceEEEEeccCCCcccccccCCeEEEEecCCCCCCCceEEeecccccCCeeeccCCceEEEEEecccCce
Q 002209 402 RSINWRSDKPSTLYWAETQDGGDAKVEVTPRDIIYTQQAEPVQGEGPEILHKLDLRYGGISWCDDSLALVYESWYKTRRT 481 (953)
Q Consensus 402 ~~~~wspDg~~i~~~~~~~~~~~~~~~~~~~~~l~~~d~~~~~g~~~~~l~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~ 481 (953)
..+.|||||+.|+|.... .....|+++++ .++..+.++.. .....+.|+|||+.|+|....++. .
T Consensus 325 ~~~~~spdg~~i~~~~~~----------~~~~~i~~~d~---~~~~~~~l~~~-~~~~~p~~spdg~~l~~~~~~~~~-~ 389 (417)
T TIGR02800 325 ASPSWSPDGDLIAFVHRE----------GGGFNIAVMDL---DGGGERVLTDT-GLDESPSFAPNGRMILYATTRGGR-G 389 (417)
T ss_pred cCeEECCCCCEEEEEEcc----------CCceEEEEEeC---CCCCeEEccCC-CCCCCceECCCCCEEEEEEeCCCc-E
Confidence 467899999988887221 12457999996 55555556543 334678999999999998876544 5
Q ss_pred EEEEEcCCCC
Q 002209 482 RTWVISPGSK 491 (953)
Q Consensus 482 ~l~~~d~~~~ 491 (953)
.+++++.++.
T Consensus 390 ~l~~~~~~g~ 399 (417)
T TIGR02800 390 VLGLVSTDGR 399 (417)
T ss_pred EEEEEECCCc
Confidence 7888887663
No 41
>PF00930 DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-terminal region; InterPro: IPR002469 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This domain defines serine peptidases belonging to MEROPS peptidase family S9 (clan SC), subfamily S9B (dipeptidyl-peptidase IV). The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. This domain is an alignment of the region to the N-terminal side of the active site, which is found in IPR001375 from INTERPRO. CD26 (3.4.14.5 from EC) is also called adenosine deaminase-binding protein (ADA-binding protein) or dipeptidylpeptidase IV (DPP IV ectoenzyme). The exopeptidase cleaves off N-terminal X-Pro or X-Ala dipeptides from polypeptides (dipeptidyl peptidase IV activity). CD26 serves as the costimulatory molecule in T cell activation and is an associated marker of autoimmune diseases, adenosine deaminase-deficiency and HIV pathogenesis. Dipeptidyl peptidase IV (DPP IV) is responsible for the removal of N-terminal dipeptides sequentially from polypeptides having unsubstituted N termini, provided that the penultimate residue is proline. The enzyme catalyses the reaction: Dipeptidyl-Polypeptide + H(2)O = Dipeptide + Polypeptide It is a type II membrane protein that forms a homodimer. CD molecules are leucocyte antigens on cell surfaces. CD antigens nomenclature is updated at Protein Reviews On The Web (http://prow.nci.nih.gov/). ; GO: 0006508 proteolysis, 0016020 membrane; PDB: 2RIP_A 3Q8W_B 2AJL_I 1TKR_B 1TK3_B 3C45_A 2G5P_A 3G0C_D 1R9M_C 1RWQ_A ....
Probab=99.78 E-value=5.2e-17 Score=179.21 Aligned_cols=332 Identities=14% Similarity=0.085 Sum_probs=194.9
Q ss_pred cCCCCEEEEEecCCCCCccccccccceeceEEecCCCCCCcceeeeeceEEEEccCCCCCCceeeeecCCCCCcccceEe
Q 002209 117 SPQRDKILFLKRRALPPLEELARPEEKLAGLRIDGKCNTRSRMSFYTGIGIHQLFPDGKLGQEIEIQGFPDGAKLNFVTW 196 (953)
Q Consensus 117 SPDG~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~i~~~~~~g~~~~~~~l~~~~~~~~~~~~~w 196 (953)
||||+++++..+. ....|-++...+||+|+++ ++.++|... ......+.|
T Consensus 1 S~d~~~~l~~~~~------------------------~~~~r~s~~~~y~i~d~~~----~~~~~l~~~--~~~~~~~~~ 50 (353)
T PF00930_consen 1 SPDGKFVLFATNY------------------------TKQWRHSFKGDYYIYDIET----GEITPLTPP--PPKLQDAKW 50 (353)
T ss_dssp -TTSSEEEEEEEE------------------------EEESSSEEEEEEEEEETTT----TEEEESS-E--ETTBSEEEE
T ss_pred CCCCCeEEEEECc------------------------EEeeeeccceeEEEEecCC----CceEECcCC--cccccccee
Confidence 8999999998763 1223345557899999965 555665432 247899999
Q ss_pred ccCCCeEEEEEeeccccCCCCcceEEEEECCCCceeecccCCCcc-ccc------------cccceEEecCCeEEEEEec
Q 002209 197 SQDGKHLAFSIRIDAEDSSSSKLRVWVADVDTGKARPLFQSPDIY-LNA------------IFDNFVWVNNSTLLVCTIP 263 (953)
Q Consensus 197 SPDG~~laf~~~~~~~~~~~~~~~l~~~d~~~g~~~~lt~~~~~~-~~~------------~~~~~~wspDg~~l~~~~~ 263 (953)
||||++|+|+. +.+||+.+..+++.++||..+... .++ ....+-|||||+.|+|..-
T Consensus 51 sP~g~~~~~v~----------~~nly~~~~~~~~~~~lT~dg~~~i~nG~~dwvyeEEv~~~~~~~~WSpd~~~la~~~~ 120 (353)
T PF00930_consen 51 SPDGKYIAFVR----------DNNLYLRDLATGQETQLTTDGEPGIYNGVPDWVYEEEVFDRRSAVWWSPDSKYLAFLRF 120 (353)
T ss_dssp -SSSTEEEEEE----------TTEEEEESSTTSEEEESES--TTTEEESB--HHHHHHTSSSSBSEEE-TTSSEEEEEEE
T ss_pred ecCCCeeEEEe----------cCceEEEECCCCCeEEeccccceeEEcCccceeccccccccccceEECCCCCEEEEEEE
Confidence 99999999987 569999999999999999866211 111 1235669999999998822
Q ss_pred CCCCCCCCCCCCCCCCceeecCCCccccchhhhhhcCCcchhhhhhhhccceEEEEEcCCceeEeCCCCcccccccCCCC
Q 002209 264 LLRGDPPKKPLVPLGPKMQSNEKRDIIQVRTFQDLLKDEYDEDLFDYYATTQLVLVSLDGTVKEIGPPAVYTSLDPSPDE 343 (953)
Q Consensus 264 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~l~~~~~~g~~~~l~~~~~~~~~~~SpDG 343 (953)
+.+. ...+.+.+-..... .-|.=
T Consensus 121 d~~~---------------------------------------------v~~~~~~~~~~~~~------------~yp~~ 143 (353)
T PF00930_consen 121 DERE---------------------------------------------VPEYPLPDYSPPDS------------QYPEV 143 (353)
T ss_dssp E-TT---------------------------------------------S-EEEEEEESSSTE------------SS-EE
T ss_pred CCcC---------------------------------------------CceEEeeccCCccc------------cCCcc
Confidence 1111 11222222211000 00000
Q ss_pred cEEEEEEecCCccccccCCCCCcceEEEeccCceEEEeccCCCcccCCccccccccCccceeeccCCCCceEE-EEeccC
Q 002209 344 KYILISSIHRPYSFIVPCGRFPRQVGVWTTDGIFVRELCDLPLAEDIPIAFNSVRKGMRSINWRSDKPSTLYW-AETQDG 422 (953)
Q Consensus 344 ~~l~~~~~~~~~~~~~~~~~~~~~i~~~d~~g~~~~~l~~~~~~~~~p~~~~~~~~~~~~~~wspDg~~i~~~-~~~~~~ 422 (953)
..+-|-. ++.. .-.-.++++++++++...+....... ........+.|++|++.+++. .++.
T Consensus 144 ~~~~YPk---~G~~-----np~v~l~v~~~~~~~~~~~~~~~~~~-------~~~~yl~~v~W~~d~~~l~~~~~nR~-- 206 (353)
T PF00930_consen 144 ESIRYPK---AGDP-----NPRVSLFVVDLASGKTTELDPPNSLN-------PQDYYLTRVGWSPDGKRLWVQWLNRD-- 206 (353)
T ss_dssp EEEE--B---TTS--------EEEEEEEESSSTCCCEE---HHHH-------TSSEEEEEEEEEETTEEEEEEEEETT--
T ss_pred cccccCC---CCCc-----CCceEEEEEECCCCcEEEeeeccccC-------CCccCcccceecCCCcEEEEEEcccC--
Confidence 0111110 0000 00126888888877655433221000 001223568999999955554 3332
Q ss_pred CCcccccccCCeEEEEecCCCCCCCceEEe-e-ccccc---CCeeec-cCCceEEEEEecccCceEEEEEcCCCCCCCcE
Q 002209 423 GDAKVEVTPRDIIYTQQAEPVQGEGPEILH-K-LDLRY---GGISWC-DDSLALVYESWYKTRRTRTWVISPGSKDVAPR 496 (953)
Q Consensus 423 ~~~~~~~~~~~~l~~~d~~~~~g~~~~~l~-~-~~~~~---~~~~~S-pDg~~l~~~~~~~~~~~~l~~~d~~~~~~~~~ 496 (953)
...-.+.++|+ ..+..+.+. . ....+ ..+.|. +++..+++.+.++ +..+||.++.+++ ..+
T Consensus 207 -------q~~~~l~~~d~---~tg~~~~~~~e~~~~Wv~~~~~~~~~~~~~~~~l~~s~~~-G~~hly~~~~~~~--~~~ 273 (353)
T PF00930_consen 207 -------QNRLDLVLCDA---STGETRVVLEETSDGWVDVYDPPHFLGPDGNEFLWISERD-GYRHLYLYDLDGG--KPR 273 (353)
T ss_dssp -------STEEEEEEEEE---CTTTCEEEEEEESSSSSSSSSEEEE-TTTSSEEEEEEETT-SSEEEEEEETTSS--EEE
T ss_pred -------CCEEEEEEEEC---CCCceeEEEEecCCcceeeecccccccCCCCEEEEEEEcC-CCcEEEEEccccc--cee
Confidence 22345677775 334444432 2 22222 235555 8998888887744 5689999999985 456
Q ss_pred EeecCCCccccCCCCCCCeEeccCCCEEEEEeeeccCCCcEEEEecCCCCCCCCCCeEEEEECC-CCceEEEeccCcccc
Q 002209 497 ILFDRSSEDVYSDPGSPMMRRTSTGTYVIAKIKKENDEGTYILLNGNGATPEGNIPFLDLFDIN-TGSKERIWESDKEKY 575 (953)
Q Consensus 497 ~~~~~~~~~~~~~~~~p~~~~SpDG~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~d~~-~~~~~~l~~~~~~~~ 575 (953)
.++......... +.++++++.|+|..... . ....+||.++++ +++.++||...+.-
T Consensus 274 ~lT~G~~~V~~i------~~~d~~~~~iyf~a~~~--------------~--p~~r~lY~v~~~~~~~~~~LT~~~~~~- 330 (353)
T PF00930_consen 274 QLTSGDWEVTSI------LGWDEDNNRIYFTANGD--------------N--PGERHLYRVSLDSGGEPKCLTCEDGDH- 330 (353)
T ss_dssp ESS-SSS-EEEE------EEEECTSSEEEEEESSG--------------G--TTSBEEEEEETTETTEEEESSTTSSTT-
T ss_pred ccccCceeeccc------ceEcCCCCEEEEEecCC--------------C--CCceEEEEEEeCCCCCeEeccCCCCCc-
Confidence 666554432111 56777777777776432 1 235689999999 99999999988751
Q ss_pred eeeeEeeccCCccccccccCCEEEEEEecCCCCc
Q 002209 576 YETTVALMSDQTEGDLYLNQLKILTSKESKTENT 609 (953)
Q Consensus 576 ~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~p~ 609 (953)
...+|||||++++.+++++..|+
T Consensus 331 -----------~~~~~Spdg~y~v~~~s~~~~P~ 353 (353)
T PF00930_consen 331 -----------YSASFSPDGKYYVDTYSGPDTPP 353 (353)
T ss_dssp -----------EEEEE-TTSSEEEEEEESSSSCE
T ss_pred -----------eEEEECCCCCEEEEEEcCCCCCC
Confidence 13579999999999999998874
No 42
>PRK10749 lysophospholipase L2; Provisional
Probab=99.76 E-value=7e-17 Score=177.03 Aligned_cols=230 Identities=16% Similarity=0.159 Sum_probs=156.2
Q ss_pred eEEEEEEcCCCcEEEEEEEcCCCCCCCCCCCccEEEEeCCCCCcCcCCCCcccCCCCCCCCccchHHHHHHHcCcEEEEc
Q 002209 639 KELIKYQRKDGVQLSATLYLPPGYDPSKDGPLPCLFWSYPGEFKSKDAAGQVRGSPNEFPRIGSTSVLLWLARGFAILGG 718 (953)
Q Consensus 639 ~~~~~~~~~dg~~~~~~l~~P~~~~~~~~~~~P~vv~~hGg~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~G~~V~~~ 718 (953)
.+...+...+|.++++..+.|+. +.++||++||.. .........+..++++||.|++
T Consensus 30 ~~~~~~~~~~g~~l~~~~~~~~~-------~~~~vll~HG~~---------------~~~~~y~~~~~~l~~~g~~v~~- 86 (330)
T PRK10749 30 REEAEFTGVDDIPIRFVRFRAPH-------HDRVVVICPGRI---------------ESYVKYAELAYDLFHLGYDVLI- 86 (330)
T ss_pred ccceEEEcCCCCEEEEEEccCCC-------CCcEEEEECCcc---------------chHHHHHHHHHHHHHCCCeEEE-
Confidence 35566777899999998887641 246899999942 1111122345567889999999
Q ss_pred CCCCCCCCCChhhh--------hhhHHHHHHHHHHHHHHHHHcCCCCCCcEEEEEeChHHHHHHHHHHhCCCcccEEEEc
Q 002209 719 PTTPIIGEGDEEAN--------DRFVEQLVACAEAAVEEVVRRGVAHPSKIAVGGHSYGAFMTANLLAHAPHLFCCGIAR 790 (953)
Q Consensus 719 ~~~~~~G~G~~~~~--------~~~~~~~~~D~~~~~~~l~~~~~~d~~~i~l~G~S~GG~~a~~~a~~~p~~~~a~v~~ 790 (953)
+|.+|+|.+... ...+...++|+.++++.+.... +..++.++||||||.+++.++.++|+.++++|+.
T Consensus 87 --~D~~G~G~S~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~--~~~~~~l~GhSmGG~ia~~~a~~~p~~v~~lvl~ 162 (330)
T PRK10749 87 --IDHRGQGRSGRLLDDPHRGHVERFNDYVDDLAAFWQQEIQPG--PYRKRYALAHSMGGAILTLFLQRHPGVFDAIALC 162 (330)
T ss_pred --EcCCCCCCCCCCCCCCCcCccccHHHHHHHHHHHHHHHHhcC--CCCCeEEEEEcHHHHHHHHHHHhCCCCcceEEEE
Confidence 555677776421 1235677888888888775542 3468999999999999999999999999999999
Q ss_pred ccCCCCCCC-C---------------------------cC-cc---c---ccchhh-hhHHHHHhc--------------
Q 002209 791 SGAYNRTLT-P---------------------------FG-FQ---N---EDRTLW-EATSTYVEM-------------- 820 (953)
Q Consensus 791 ~~~~d~~~~-~---------------------------~~-~~---~---~~~~~~-~~~~~~~~~-------------- 820 (953)
+|....... + +. .. . ...... ...+.+...
T Consensus 163 ~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 242 (330)
T PRK10749 163 APMFGIVLPLPSWMARRILNWAEGHPRIRDGYAIGTGRWRPLPFAINVLTHSRERYRRNLRFYADDPELRVGGPTYHWVR 242 (330)
T ss_pred CchhccCCCCCcHHHHHHHHHHHHhcCCCCcCCCCCCCCCCCCcCCCCCCCCHHHHHHHHHHHHhCCCcccCCCcHHHHH
Confidence 886431100 0 00 00 0 000000 000111100
Q ss_pred -------CcccccCCCCCcEEEEEeCCCCCCCCchHHHHHHHHHHHhCC---CcEEEEEeCCCCccCCCccc--HHHHHH
Q 002209 821 -------SPFMSANKLKKPILLVHGEEDNNSGTLTMQSDRFFNALKGHG---ALCRLVILPFESHGYAARES--IMHVLW 888 (953)
Q Consensus 821 -------sp~~~~~~i~~P~Li~~G~~D~~v~~~~~~~~~~~~~l~~~g---~~~~~~~~~~~~H~~~~~~~--~~~~~~ 888 (953)
.....+.+++.|+||+||++|.+|+ +..+.++++.++..+ ..+++++||+++|....... .+.+++
T Consensus 243 ~~~~~~~~~~~~~~~i~~P~Lii~G~~D~vv~--~~~~~~~~~~l~~~~~~~~~~~l~~~~gagH~~~~E~~~~r~~v~~ 320 (330)
T PRK10749 243 ESILAGEQVLAGAGDITTPLLLLQAEEERVVD--NRMHDRFCEARTAAGHPCEGGKPLVIKGAYHEILFEKDAMRSVALN 320 (330)
T ss_pred HHHHHHHHHHhhccCCCCCEEEEEeCCCeeeC--HHHHHHHHHHHhhcCCCCCCceEEEeCCCcchhhhCCcHHHHHHHH
Confidence 1123456789999999999999999 898999999987654 34689999999998764433 677889
Q ss_pred HHHHHHHHh
Q 002209 889 ETDRWLQKY 897 (953)
Q Consensus 889 ~i~~fl~~~ 897 (953)
.|.+||+++
T Consensus 321 ~i~~fl~~~ 329 (330)
T PRK10749 321 AIVDFFNRH 329 (330)
T ss_pred HHHHHHhhc
Confidence 999999874
No 43
>KOG1552 consensus Predicted alpha/beta hydrolase [General function prediction only]
Probab=99.76 E-value=1.1e-17 Score=164.00 Aligned_cols=219 Identities=17% Similarity=0.194 Sum_probs=160.8
Q ss_pred ceEEEEEEcCCCcEEEEEEEcCCCCCCCCCCCccEEEEeCCCCCcCcCCCCcccCCCCCCCCccchHHHHHHH-cCcEEE
Q 002209 638 QKELIKYQRKDGVQLSATLYLPPGYDPSKDGPLPCLFWSYPGEFKSKDAAGQVRGSPNEFPRIGSTSVLLWLA-RGFAIL 716 (953)
Q Consensus 638 ~~~~~~~~~~dg~~~~~~l~~P~~~~~~~~~~~P~vv~~hGg~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~-~G~~V~ 716 (953)
.++.+..++..|..+.+..+.|+.. ..++++|.||.....+ | .......|.. .++.|+
T Consensus 34 ~v~v~~~~t~rgn~~~~~y~~~~~~------~~~~lly~hGNa~Dlg----q-----------~~~~~~~l~~~ln~nv~ 92 (258)
T KOG1552|consen 34 FVEVFKVKTSRGNEIVCMYVRPPEA------AHPTLLYSHGNAADLG----Q-----------MVELFKELSIFLNCNVV 92 (258)
T ss_pred ccceEEeecCCCCEEEEEEEcCccc------cceEEEEcCCcccchH----H-----------HHHHHHHHhhcccceEE
Confidence 5677778888899999999988742 3689999999521100 0 0111222332 489999
Q ss_pred EcCCCCCCCCCChhhhhhhHHHHHHHHHHHHHHHHHcCCCCCCcEEEEEeChHHHHHHHHHHhCCCcccEEEEcccCCCC
Q 002209 717 GGPTTPIIGEGDEEANDRFVEQLVACAEAAVEEVVRRGVAHPSKIAVGGHSYGAFMTANLLAHAPHLFCCGIARSGAYNR 796 (953)
Q Consensus 717 ~~~~~~~~G~G~~~~~~~~~~~~~~D~~~~~~~l~~~~~~d~~~i~l~G~S~GG~~a~~~a~~~p~~~~a~v~~~~~~d~ 796 (953)
. +|+.|+|.+.+... -...++|+.++.+||++... ..++|+|+|+|+|...++.+|++.| .+|+|+++|+.+.
T Consensus 93 ~---~DYSGyG~S~G~ps-E~n~y~Di~avye~Lr~~~g-~~~~Iil~G~SiGt~~tv~Lasr~~--~~alVL~SPf~S~ 165 (258)
T KOG1552|consen 93 S---YDYSGYGRSSGKPS-ERNLYADIKAVYEWLRNRYG-SPERIILYGQSIGTVPTVDLASRYP--LAAVVLHSPFTSG 165 (258)
T ss_pred E---EecccccccCCCcc-cccchhhHHHHHHHHHhhcC-CCceEEEEEecCCchhhhhHhhcCC--cceEEEeccchhh
Confidence 9 67789998865432 24789999999999999875 6789999999999999999999997 9999999998773
Q ss_pred CCCCcCcccccchhhhhHHHHHhcCcccccCCCCCcEEEEEeCCCCCCCCchHHHHHHHHHHHhCCCcEEEEEeCCCCcc
Q 002209 797 TLTPFGFQNEDRTLWEATSTYVEMSPFMSANKLKKPILLVHGEEDNNSGTLTMQSDRFFNALKGHGALCRLVILPFESHG 876 (953)
Q Consensus 797 ~~~~~~~~~~~~~~~~~~~~~~~~sp~~~~~~i~~P~Li~~G~~D~~v~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~H~ 876 (953)
.-.- +.....+.| +..+.-++.+..+++|+||+||++|++|+ ..++.++|+.++.+ ++..+..|+||.
T Consensus 166 ~rv~--~~~~~~~~~-----~d~f~~i~kI~~i~~PVLiiHgtdDevv~--~sHg~~Lye~~k~~---~epl~v~g~gH~ 233 (258)
T KOG1552|consen 166 MRVA--FPDTKTTYC-----FDAFPNIEKISKITCPVLIIHGTDDEVVD--FSHGKALYERCKEK---VEPLWVKGAGHN 233 (258)
T ss_pred hhhh--ccCcceEEe-----eccccccCcceeccCCEEEEecccCceec--ccccHHHHHhcccc---CCCcEEecCCCc
Confidence 2111 111111112 11223367788889999999999999999 99999999999876 678889999997
Q ss_pred CCCcccHHHHHHHHHHHHHHhc
Q 002209 877 YAARESIMHVLWETDRWLQKYC 898 (953)
Q Consensus 877 ~~~~~~~~~~~~~i~~fl~~~l 898 (953)
.. +...++.+.+..|+..-+
T Consensus 234 ~~--~~~~~yi~~l~~f~~~~~ 253 (258)
T KOG1552|consen 234 DI--ELYPEYIEHLRRFISSVL 253 (258)
T ss_pred cc--ccCHHHHHHHHHHHHHhc
Confidence 53 334566777777776543
No 44
>TIGR02800 propeller_TolB tol-pal system beta propeller repeat protein TolB. The Tol-PAL system is required for bacterial outer membrane integrity. E. coli TolB is involved in the tonB-independent uptake of group A colicins (colicins A, E1, E2, E3 and K), and is necessary for the colicins to reach their respective targets after initial binding to the bacteria. It is also involved in uptake of filamentous DNA. Study of its structure suggest that the TolB protein might be involved in the recycling of peptidoglycan or in its covalent linking with lipoproteins. The Tol-Pal system is also implicated in pathogenesis of E. coli, Haemophilus ducreyi, Salmonella enterica and Vibrio cholerae, but the mechanism(s) is unclear.
Probab=99.76 E-value=2.1e-16 Score=180.46 Aligned_cols=252 Identities=16% Similarity=0.161 Sum_probs=178.7
Q ss_pred CCCeEEEEEeeccccCCCCcceEEEEECCCCceeecccCCCccccccccceEEecCCeEEEEEecCCCCCCCCCCCCCCC
Q 002209 199 DGKHLAFSIRIDAEDSSSSKLRVWVADVDTGKARPLFQSPDIYLNAIFDNFVWVNNSTLLVCTIPLLRGDPPKKPLVPLG 278 (953)
Q Consensus 199 DG~~laf~~~~~~~~~~~~~~~l~~~d~~~g~~~~lt~~~~~~~~~~~~~~~wspDg~~l~~~~~~~~~~~~~~~~~~~~ 278 (953)
.+.+|+|.+... .++..+||++|.+++..++++..... +..+.|||||+.|+|....
T Consensus 154 ~~~~~~~~~~~~----~~~~~~l~~~d~~g~~~~~l~~~~~~-----~~~p~~Spdg~~la~~~~~-------------- 210 (417)
T TIGR02800 154 FSTRIAYVSKSG----KSRRYELQVADYDGANPQTITRSREP-----ILSPAWSPDGQKLAYVSFE-------------- 210 (417)
T ss_pred cCCEEEEEEEeC----CCCcceEEEEcCCCCCCEEeecCCCc-----eecccCCCCCCEEEEEEcC--------------
Confidence 467899987532 35678999999998888888875532 5588999999999987210
Q ss_pred CceeecCCCccccchhhhhhcCCcchhhhhhhhccceEEEEEc-CCceeEeCCC-CcccccccCCCCcEEEEEEecCCcc
Q 002209 279 PKMQSNEKRDIIQVRTFQDLLKDEYDEDLFDYYATTQLVLVSL-DGTVKEIGPP-AVYTSLDPSPDEKYILISSIHRPYS 356 (953)
Q Consensus 279 ~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~l~~~~~-~g~~~~l~~~-~~~~~~~~SpDG~~l~~~~~~~~~~ 356 (953)
. +..+|+++++ +|+.+.+... +....+.|||||+.|+|+....
T Consensus 211 ------------------------~--------~~~~i~v~d~~~g~~~~~~~~~~~~~~~~~spDg~~l~~~~~~~--- 255 (417)
T TIGR02800 211 ------------------------S--------GKPEIYVQDLATGQREKVASFPGMNGAPAFSPDGSKLAVSLSKD--- 255 (417)
T ss_pred ------------------------C--------CCcEEEEEECCCCCEEEeecCCCCccceEECCCCCEEEEEECCC---
Confidence 0 2357999999 8877776654 5566799999999999986332
Q ss_pred ccccCCCCCcceEEEeccCceEEEeccCCCcccCCccccccccCccceeeccCCCCceEEEEeccCCCcccccccCCeEE
Q 002209 357 FIVPCGRFPRQVGVWTTDGIFVRELCDLPLAEDIPIAFNSVRKGMRSINWRSDKPSTLYWAETQDGGDAKVEVTPRDIIY 436 (953)
Q Consensus 357 ~~~~~~~~~~~i~~~d~~g~~~~~l~~~~~~~~~p~~~~~~~~~~~~~~wspDg~~i~~~~~~~~~~~~~~~~~~~~~l~ 436 (953)
...+|++++++++..+.++..... ...+.|+|||+.|+|..+. .....||
T Consensus 256 -------~~~~i~~~d~~~~~~~~l~~~~~~-------------~~~~~~s~dg~~l~~~s~~----------~g~~~iy 305 (417)
T TIGR02800 256 -------GNPDIYVMDLDGKQLTRLTNGPGI-------------DTEPSWSPDGKSIAFTSDR----------GGSPQIY 305 (417)
T ss_pred -------CCccEEEEECCCCCEEECCCCCCC-------------CCCEEECCCCCEEEEEECC----------CCCceEE
Confidence 123799999998877777654321 1357899999999887322 2234799
Q ss_pred EEecCCCCCCCceEEeecccccCCeeeccCCceEEEEEecccCceEEEEEcCCCCCCCcEEeecCCCccccCCCCCCCeE
Q 002209 437 TQQAEPVQGEGPEILHKLDLRYGGISWCDDSLALVYESWYKTRRTRTWVISPGSKDVAPRILFDRSSEDVYSDPGSPMMR 516 (953)
Q Consensus 437 ~~d~~~~~g~~~~~l~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~p~~~ 516 (953)
++++ .+++.+.++........+.|||||+.|++..... ...+|+.++++++ ..+.++.... . .. +.
T Consensus 306 ~~d~---~~~~~~~l~~~~~~~~~~~~spdg~~i~~~~~~~-~~~~i~~~d~~~~--~~~~l~~~~~-~-----~~--p~ 371 (417)
T TIGR02800 306 MMDA---DGGEVRRLTFRGGYNASPSWSPDGDLIAFVHREG-GGFNIAVMDLDGG--GERVLTDTGL-D-----ES--PS 371 (417)
T ss_pred EEEC---CCCCEEEeecCCCCccCeEECCCCCEEEEEEccC-CceEEEEEeCCCC--CeEEccCCCC-C-----CC--ce
Confidence 9996 6667777765555566789999999999987654 3468999999874 3444443211 1 12 56
Q ss_pred eccCCCEEEEEeeeccCCCcEEEEecCCCCCCCCCCeEEEEECCCCceEEEecc
Q 002209 517 RTSTGTYVIAKIKKENDEGTYILLNGNGATPEGNIPFLDLFDINTGSKERIWES 570 (953)
Q Consensus 517 ~SpDG~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~d~~~~~~~~l~~~ 570 (953)
|+|||++|+|..... ....|++++.+++..+.++..
T Consensus 372 ~spdg~~l~~~~~~~------------------~~~~l~~~~~~g~~~~~~~~~ 407 (417)
T TIGR02800 372 FAPNGRMILYATTRG------------------GRGVLGLVSTDGRFRARLPLG 407 (417)
T ss_pred ECCCCCEEEEEEeCC------------------CcEEEEEEECCCceeeECCCC
Confidence 999999999987532 123578888777666666544
No 45
>COG0412 Dienelactone hydrolase and related enzymes [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=99.76 E-value=9.7e-17 Score=164.22 Aligned_cols=212 Identities=20% Similarity=0.187 Sum_probs=164.1
Q ss_pred EEEEEEcCCCcEEEEEEEcCCCCCCCCCCCccEEEEeCCCCCcCcCCCCcccCCCCCCCCccchHHHHHHHcCcEEEEcC
Q 002209 640 ELIKYQRKDGVQLSATLYLPPGYDPSKDGPLPCLFWSYPGEFKSKDAAGQVRGSPNEFPRIGSTSVLLWLARGFAILGGP 719 (953)
Q Consensus 640 ~~~~~~~~dg~~~~~~l~~P~~~~~~~~~~~P~vv~~hGg~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~G~~V~~~~ 719 (953)
+.+++...+ .++.+++..|.+ +++.|+||++|+-.. .+. .-...++.||.+||.|+.++
T Consensus 3 ~~v~~~~~~-~~~~~~~a~P~~-----~~~~P~VIv~hei~G------------l~~---~i~~~a~rlA~~Gy~v~~Pd 61 (236)
T COG0412 3 TDVTIPAPD-GELPAYLARPAG-----AGGFPGVIVLHEIFG------------LNP---HIRDVARRLAKAGYVVLAPD 61 (236)
T ss_pred cceEeeCCC-ceEeEEEecCCc-----CCCCCEEEEEecccC------------Cch---HHHHHHHHHHhCCcEEEech
Confidence 456777666 899999999986 344699999998421 111 12345778999999999988
Q ss_pred CCCCCCCCChhh--h----h-----hhHHHHHHHHHHHHHHHHHcCCCCCCcEEEEEeChHHHHHHHHHHhCCCcccEEE
Q 002209 720 TTPIIGEGDEEA--N----D-----RFVEQLVACAEAAVEEVVRRGVAHPSKIAVGGHSYGAFMTANLLAHAPHLFCCGI 788 (953)
Q Consensus 720 ~~~~~G~G~~~~--~----~-----~~~~~~~~D~~~~~~~l~~~~~~d~~~i~l~G~S~GG~~a~~~a~~~p~~~~a~v 788 (953)
.+...|...... . . ........|+.++++||.+++.++.++|+++|+||||.+++.++.+.| .++|+|
T Consensus 62 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~a~~~~L~~~~~~~~~~ig~~GfC~GG~~a~~~a~~~~-~v~a~v 140 (236)
T COG0412 62 LYGRQGDPTDIEDEPAELETGLVERVDPAEVLADIDAALDYLARQPQVDPKRIGVVGFCMGGGLALLAATRAP-EVKAAV 140 (236)
T ss_pred hhccCCCCCcccccHHHHhhhhhccCCHHHHHHHHHHHHHHHHhCCCCCCceEEEEEEcccHHHHHHhhcccC-CccEEE
Confidence 876555333222 1 0 112567899999999999998899999999999999999999999986 799999
Q ss_pred EcccCCCCCCCCcCcccccchhhhhHHHHHhcCcccccCCCCCcEEEEEeCCCCCCCCchHHHHHHHHHHHhCCCcEEEE
Q 002209 789 ARSGAYNRTLTPFGFQNEDRTLWEATSTYVEMSPFMSANKLKKPILLVHGEEDNNSGTLTMQSDRFFNALKGHGALCRLV 868 (953)
Q Consensus 789 ~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~sp~~~~~~i~~P~Li~~G~~D~~v~~~~~~~~~~~~~l~~~g~~~~~~ 868 (953)
+..|..-. .......++++|+|+.+|+.|..+| ...-..+.+++..+++.+++.
T Consensus 141 ~fyg~~~~------------------------~~~~~~~~~~~pvl~~~~~~D~~~p--~~~~~~~~~~~~~~~~~~~~~ 194 (236)
T COG0412 141 AFYGGLIA------------------------DDTADAPKIKVPVLLHLAGEDPYIP--AADVDALAAALEDAGVKVDLE 194 (236)
T ss_pred EecCCCCC------------------------CcccccccccCcEEEEecccCCCCC--hhHHHHHHHHHHhcCCCeeEE
Confidence 98874210 0111156789999999999999998 888889999999998899999
Q ss_pred EeCCCCccCCCcc----------cHHHHHHHHHHHHHHhcc
Q 002209 869 ILPFESHGYAARE----------SIMHVLWETDRWLQKYCV 899 (953)
Q Consensus 869 ~~~~~~H~~~~~~----------~~~~~~~~i~~fl~~~l~ 899 (953)
+|+++.|+|.... ..+..++++.+||.+++.
T Consensus 195 ~y~ga~H~F~~~~~~~~~~y~~~aa~~a~~~~~~ff~~~~~ 235 (236)
T COG0412 195 IYPGAGHGFANDRADYHPGYDAAAAEDAWQRVLAFFKRLLG 235 (236)
T ss_pred EeCCCccccccCCCcccccCCHHHHHHHHHHHHHHHHHhcc
Confidence 9999999997431 235678899999999874
No 46
>KOG0271 consensus Notchless-like WD40 repeat-containing protein [Function unknown]
Probab=99.76 E-value=8.2e-17 Score=162.16 Aligned_cols=325 Identities=16% Similarity=0.235 Sum_probs=198.1
Q ss_pred CCCceecCCCCEEEEEecCCCCCccccccccceeceEEecCCCCCCcceeeeeceEEEEccCCCCCCceeeeecCCCCCc
Q 002209 111 LPALSFSPQRDKILFLKRRALPPLEELARPEEKLAGLRIDGKCNTRSRMSFYTGIGIHQLFPDGKLGQEIEIQGFPDGAK 190 (953)
Q Consensus 111 ~~~~~~SPDG~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~i~~~~~~g~~~~~~~l~~~~~~~~ 190 (953)
+-.++|||||++||..+.+ +.+++||+.+. .+....++ +..+
T Consensus 118 Vl~~~fsp~g~~l~tGsGD---------------------------------~TvR~WD~~Te---Tp~~t~Kg--H~~W 159 (480)
T KOG0271|consen 118 VLSVQFSPTGSRLVTGSGD---------------------------------TTVRLWDLDTE---TPLFTCKG--HKNW 159 (480)
T ss_pred EEEEEecCCCceEEecCCC---------------------------------ceEEeeccCCC---CcceeecC--CccE
Confidence 4567899999999988765 36789998541 12222222 2248
Q ss_pred ccceEeccCCCeEEEEEeeccccCCCCcceEEEEECCCCce--eecccCCCccccccccceEEe-----cCCeEEEEEec
Q 002209 191 LNFVTWSQDGKHLAFSIRIDAEDSSSSKLRVWVADVDTGKA--RPLFQSPDIYLNAIFDNFVWV-----NNSTLLVCTIP 263 (953)
Q Consensus 191 ~~~~~wSPDG~~laf~~~~~~~~~~~~~~~l~~~d~~~g~~--~~lt~~~~~~~~~~~~~~~ws-----pDg~~l~~~~~ 263 (953)
+..++|||||++||.. ..+..|.++|+.+|+. +.|..+... +..++|- |+.++|+.+
T Consensus 160 VlcvawsPDgk~iASG---------~~dg~I~lwdpktg~~~g~~l~gH~K~-----It~Lawep~hl~p~~r~las~-- 223 (480)
T KOG0271|consen 160 VLCVAWSPDGKKIASG---------SKDGSIRLWDPKTGQQIGRALRGHKKW-----ITALAWEPLHLVPPCRRLASS-- 223 (480)
T ss_pred EEEEEECCCcchhhcc---------ccCCeEEEecCCCCCcccccccCcccc-----eeEEeecccccCCCccceecc--
Confidence 9999999999999984 3577899999988765 344443332 6678885 555655533
Q ss_pred CCCCCCCCCCCCCCCCceeecCCCccccchhhhhhcCCcchhhhhhhhccceEEEEEc-CC-ceeEeCCC-CcccccccC
Q 002209 264 LLRGDPPKKPLVPLGPKMQSNEKRDIIQVRTFQDLLKDEYDEDLFDYYATTQLVLVSL-DG-TVKEIGPP-AVYTSLDPS 340 (953)
Q Consensus 264 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~l~~~~~-~g-~~~~l~~~-~~~~~~~~S 340 (953)
. ..+.+.++|+ .| ....+... ..++.+.|-
T Consensus 224 --------------------------------------s---------kDg~vrIWd~~~~~~~~~lsgHT~~VTCvrwG 256 (480)
T KOG0271|consen 224 --------------------------------------S---------KDGSVRIWDTKLGTCVRTLSGHTASVTCVRWG 256 (480)
T ss_pred --------------------------------------c---------CCCCEEEEEccCceEEEEeccCccceEEEEEc
Confidence 1 2245556677 44 34445544 778888897
Q ss_pred CCCcEEEEEEecCCccccccCCCCCcceEEEecc-CceEEEeccCCCc-ccCCccccccccCccceeeccCCCCceEEEE
Q 002209 341 PDEKYILISSIHRPYSFIVPCGRFPRQVGVWTTD-GIFVRELCDLPLA-EDIPIAFNSVRKGMRSINWRSDKPSTLYWAE 418 (953)
Q Consensus 341 pDG~~l~~~~~~~~~~~~~~~~~~~~~i~~~d~~-g~~~~~l~~~~~~-~~~p~~~~~~~~~~~~~~wspDg~~i~~~~~ 418 (953)
-+| ++|+... .+.|.+|+.. |.-.+.|..+..- ..+....+ .-.|.-+|.|-|+..--..+
T Consensus 257 G~g--liySgS~------------DrtIkvw~a~dG~~~r~lkGHahwvN~lalsTd---y~LRtgaf~~t~~~~~~~se 319 (480)
T KOG0271|consen 257 GEG--LIYSGSQ------------DRTIKVWRALDGKLCRELKGHAHWVNHLALSTD---YVLRTGAFDHTGRKPKSFSE 319 (480)
T ss_pred CCc--eEEecCC------------CceEEEEEccchhHHHhhcccchheeeeeccch---hhhhccccccccccCCChHH
Confidence 665 6666532 3489999886 4444555443211 00000000 00122234444432110000
Q ss_pred ------------eccCCCcccccccCCeEEEEecCCCCCCCc-eEEeecccccCCeeeccCCceEEEEEecccCceEEEE
Q 002209 419 ------------TQDGGDAKVEVTPRDIIYTQQAEPVQGEGP-EILHKLDLRYGGISWCDDSLALVYESWYKTRRTRTWV 485 (953)
Q Consensus 419 ------------~~~~~~~~~~~~~~~~l~~~d~~~~~g~~~-~~l~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~l~~ 485 (953)
..+.+...+..+....+++|+ |....++ .+.+.+..-++.+.|||||++|+.++.++.. +||.
T Consensus 320 ~~~~Al~rY~~~~~~~~erlVSgsDd~tlflW~--p~~~kkpi~rmtgHq~lVn~V~fSPd~r~IASaSFDkSV--kLW~ 395 (480)
T KOG0271|consen 320 EQKKALERYEAVLKDSGERLVSGSDDFTLFLWN--PFKSKKPITRMTGHQALVNHVSFSPDGRYIASASFDKSV--KLWD 395 (480)
T ss_pred HHHHHHHHHHHhhccCcceeEEecCCceEEEec--ccccccchhhhhchhhheeeEEECCCccEEEEeecccce--eeee
Confidence 001111112234456889998 4554433 3567788888999999999999999888754 6775
Q ss_pred EcCCCCCCCcEEeecCCCccccCCCCCCCeEeccCCCEEEEEeeeccCCCcEEEEecCCCCCCCCCCeEEEEECCCCceE
Q 002209 486 ISPGSKDVAPRILFDRSSEDVYSDPGSPMMRRTSTGTYVIAKIKKENDEGTYILLNGNGATPEGNIPFLDLFDINTGSKE 565 (953)
Q Consensus 486 ~d~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~SpDG~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~d~~~~~~~ 565 (953)
.+ +| +....+..+...+|. ++||.|.+.|+..+.+. .|.+||+.+++..
T Consensus 396 g~--tG--k~lasfRGHv~~VYq------vawsaDsRLlVS~SkDs---------------------TLKvw~V~tkKl~ 444 (480)
T KOG0271|consen 396 GR--TG--KFLASFRGHVAAVYQ------VAWSADSRLLVSGSKDS---------------------TLKVWDVRTKKLK 444 (480)
T ss_pred CC--Cc--chhhhhhhccceeEE------EEeccCccEEEEcCCCc---------------------eEEEEEeeeeeec
Confidence 43 32 444456667777887 89999999888776432 4999999988876
Q ss_pred EEeccCcccceeeeEeeccCCccccccccCCEEE
Q 002209 566 RIWESDKEKYYETTVALMSDQTEGDLYLNQLKIL 599 (953)
Q Consensus 566 ~l~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~ 599 (953)
.=..+.++ .+. ...|||||++++
T Consensus 445 ~DLpGh~D----EVf-------~vDwspDG~rV~ 467 (480)
T KOG0271|consen 445 QDLPGHAD----EVF-------AVDWSPDGQRVA 467 (480)
T ss_pred ccCCCCCc----eEE-------EEEecCCCceee
Confidence 54332222 011 146899998765
No 47
>KOG4391 consensus Predicted alpha/beta hydrolase BEM46 [General function prediction only]
Probab=99.75 E-value=1.4e-17 Score=155.55 Aligned_cols=237 Identities=17% Similarity=0.185 Sum_probs=172.8
Q ss_pred CCCCcCCCceEEEEEEcCCCcEEEEEEEcCCCCCCCCCCCccEEEEeCCCCCcCcCCCCcccCCCCCCCCccchHH-HHH
Q 002209 630 PYPQLASLQKELIKYQRKDGVQLSATLYLPPGYDPSKDGPLPCLFWSYPGEFKSKDAAGQVRGSPNEFPRIGSTSV-LLW 708 (953)
Q Consensus 630 ~~~~~~~~~~~~~~~~~~dg~~~~~~l~~P~~~~~~~~~~~P~vv~~hGg~~~~~~~~~~~~~~~~~~~~~~~~~~-~~l 708 (953)
+.|....++-|++++.+.|..++++++.+-++ ..|+++++||...+ + +..-..+ ..+
T Consensus 45 ptP~~~n~pye~i~l~T~D~vtL~a~~~~~E~-------S~pTlLyfh~NAGN-------m--------Ghr~~i~~~fy 102 (300)
T KOG4391|consen 45 PTPKEFNMPYERIELRTRDKVTLDAYLMLSES-------SRPTLLYFHANAGN-------M--------GHRLPIARVFY 102 (300)
T ss_pred CCccccCCCceEEEEEcCcceeEeeeeecccC-------CCceEEEEccCCCc-------c--------cchhhHHHHHH
Confidence 44566678889999999999999999998332 37999999995311 1 1111112 234
Q ss_pred HHcCcEEEEcCCCCCCCCCChhhhhhhHHHHHHHHHHHHHHHHHcCCCCCCcEEEEEeChHHHHHHHHHHhCCCcccEEE
Q 002209 709 LARGFAILGGPTTPIIGEGDEEANDRFVEQLVACAEAAVEEVVRRGVAHPSKIAVGGHSYGAFMTANLLAHAPHLFCCGI 788 (953)
Q Consensus 709 a~~G~~V~~~~~~~~~G~G~~~~~~~~~~~~~~D~~~~~~~l~~~~~~d~~~i~l~G~S~GG~~a~~~a~~~p~~~~a~v 788 (953)
.+.++.|+.. .++|+|.+.+.. .-.....|..++++||..++..|..+|.++|.|.||..|+.+|++..+++.|+|
T Consensus 103 ~~l~mnv~iv---sYRGYG~S~Gsp-sE~GL~lDs~avldyl~t~~~~dktkivlfGrSlGGAvai~lask~~~ri~~~i 178 (300)
T KOG4391|consen 103 VNLKMNVLIV---SYRGYGKSEGSP-SEEGLKLDSEAVLDYLMTRPDLDKTKIVLFGRSLGGAVAIHLASKNSDRISAII 178 (300)
T ss_pred HHcCceEEEE---EeeccccCCCCc-cccceeccHHHHHHHHhcCccCCcceEEEEecccCCeeEEEeeccchhheeeee
Confidence 6789999994 457888886643 235677899999999999999999999999999999999999999989999999
Q ss_pred EcccCCCC-C-CCCcCcccc--cchhhhhHHHHHhcCcccccCCCCCcEEEEEeCCCCCCCCchHHHHHHHHHHHhCCCc
Q 002209 789 ARSGAYNR-T-LTPFGFQNE--DRTLWEATSTYVEMSPFMSANKLKKPILLVHGEEDNNSGTLTMQSDRFFNALKGHGAL 864 (953)
Q Consensus 789 ~~~~~~d~-~-~~~~~~~~~--~~~~~~~~~~~~~~sp~~~~~~i~~P~Li~~G~~D~~v~~~~~~~~~~~~~l~~~g~~ 864 (953)
...-+.+. . ..+..+... .-..|--... ++-...+.+.+.|.|++.|..|..|| +-+.+++|+..... .
T Consensus 179 vENTF~SIp~~~i~~v~p~~~k~i~~lc~kn~---~~S~~ki~~~~~P~LFiSGlkDelVP--P~~Mr~Ly~~c~S~--~ 251 (300)
T KOG4391|consen 179 VENTFLSIPHMAIPLVFPFPMKYIPLLCYKNK---WLSYRKIGQCRMPFLFISGLKDELVP--PVMMRQLYELCPSR--T 251 (300)
T ss_pred eechhccchhhhhheeccchhhHHHHHHHHhh---hcchhhhccccCceEEeecCccccCC--cHHHHHHHHhCchh--h
Confidence 88766553 1 122222111 1111221112 23334455778999999999999999 99999999988765 3
Q ss_pred EEEEEeCCCCccCCCcccHHHHHHHHHHHHHHhccCC
Q 002209 865 CRLVILPFESHGYAARESIMHVLWETDRWLQKYCVSN 901 (953)
Q Consensus 865 ~~~~~~~~~~H~~~~~~~~~~~~~~i~~fl~~~l~~~ 901 (953)
+++..||++.|+-+... .-.++.|.+|+.+..+..
T Consensus 252 Krl~eFP~gtHNDT~i~--dGYfq~i~dFlaE~~~~~ 286 (300)
T KOG4391|consen 252 KRLAEFPDGTHNDTWIC--DGYFQAIEDFLAEVVKSS 286 (300)
T ss_pred hhheeCCCCccCceEEe--ccHHHHHHHHHHHhccCC
Confidence 58899999999865432 346788999999876543
No 48
>COG0823 TolB Periplasmic component of the Tol biopolymer transport system [Intracellular trafficking and secretion]
Probab=99.73 E-value=1e-16 Score=176.95 Aligned_cols=226 Identities=18% Similarity=0.177 Sum_probs=160.5
Q ss_pred CCCceecCCCCEEEEEecCCCCCccccccccceeceEEecCCCCCCcceeeeeceEEEEccCCCCCCceeeeecCCCCCc
Q 002209 111 LPALSFSPQRDKILFLKRRALPPLEELARPEEKLAGLRIDGKCNTRSRMSFYTGIGIHQLFPDGKLGQEIEIQGFPDGAK 190 (953)
Q Consensus 111 ~~~~~~SPDG~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~i~~~~~~g~~~~~~~l~~~~~~~~ 190 (953)
...|.|||||++++|.... ..+.. .++++++.. ++...+... ...
T Consensus 195 ~~~p~ws~~~~~~~y~~f~-----------------------~~~~~------~i~~~~l~~----g~~~~i~~~--~g~ 239 (425)
T COG0823 195 ILTPAWSPDGKKLAYVSFE-----------------------LGGCP------RIYYLDLNT----GKRPVILNF--NGN 239 (425)
T ss_pred eeccccCcCCCceEEEEEe-----------------------cCCCc------eEEEEeccC----Cccceeecc--CCc
Confidence 4468999999999999763 11113 689999855 444444333 346
Q ss_pred ccceEeccCCCeEEEEEeeccccCCCCcceEEEEECCCCceeecccCCCccccccccceEEecCCeEEEEEecCCCCCCC
Q 002209 191 LNFVTWSQDGKHLAFSIRIDAEDSSSSKLRVWVADVDTGKARPLFQSPDIYLNAIFDNFVWVNNSTLLVCTIPLLRGDPP 270 (953)
Q Consensus 191 ~~~~~wSPDG~~laf~~~~~~~~~~~~~~~l~~~d~~~g~~~~lt~~~~~~~~~~~~~~~wspDg~~l~~~~~~~~~~~~ 270 (953)
...|+|||||++|+|+.. +++..+||++|+.++..++||..... -..+.|+|||+.|+|.+..
T Consensus 240 ~~~P~fspDG~~l~f~~~------rdg~~~iy~~dl~~~~~~~Lt~~~gi-----~~~Ps~spdG~~ivf~Sdr------ 302 (425)
T COG0823 240 NGAPAFSPDGSKLAFSSS------RDGSPDIYLMDLDGKNLPRLTNGFGI-----NTSPSWSPDGSKIVFTSDR------ 302 (425)
T ss_pred cCCccCCCCCCEEEEEEC------CCCCccEEEEcCCCCcceecccCCcc-----ccCccCCCCCCEEEEEeCC------
Confidence 789999999999999875 56899999999999998888876653 3389999999999998221
Q ss_pred CCCCCCCCCceeecCCCccccchhhhhhcCCcchhhhhhhhccceEEEEEc-CCceeEeCCC-CcccccccCCCCcEEEE
Q 002209 271 KKPLVPLGPKMQSNEKRDIIQVRTFQDLLKDEYDEDLFDYYATTQLVLVSL-DGTVKEIGPP-AVYTSLDPSPDEKYILI 348 (953)
Q Consensus 271 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~l~~~~~-~g~~~~l~~~-~~~~~~~~SpDG~~l~~ 348 (953)
. +..+||++++ .+..++++.. +....+.|||||++|+|
T Consensus 303 --------------------------------~--------G~p~I~~~~~~g~~~~riT~~~~~~~~p~~SpdG~~i~~ 342 (425)
T COG0823 303 --------------------------------G--------GRPQIYLYDLEGSQVTRLTFSGGGNSNPVWSPDGDKIVF 342 (425)
T ss_pred --------------------------------C--------CCcceEEECCCCCceeEeeccCCCCcCccCCCCCCEEEE
Confidence 0 4568999999 6678888887 66669999999999999
Q ss_pred EEecCCccccccCCCCCcceEEEeccCce-EEEeccCCCcccCCccccccccCccceeeccCCCCceEEEEeccCCCccc
Q 002209 349 SSIHRPYSFIVPCGRFPRQVGVWTTDGIF-VRELCDLPLAEDIPIAFNSVRKGMRSINWRSDKPSTLYWAETQDGGDAKV 427 (953)
Q Consensus 349 ~~~~~~~~~~~~~~~~~~~i~~~d~~g~~-~~~l~~~~~~~~~p~~~~~~~~~~~~~~wspDg~~i~~~~~~~~~~~~~~ 427 (953)
.+.... ..+|.+.++..+. .+.++..... ..+.|+|||+.+.|....
T Consensus 343 ~~~~~g----------~~~i~~~~~~~~~~~~~lt~~~~~--------------e~ps~~~ng~~i~~~s~~-------- 390 (425)
T COG0823 343 ESSSGG----------QWDIDKNDLASGGKIRILTSTYLN--------------ESPSWAPNGRMIMFSSGQ-------- 390 (425)
T ss_pred EeccCC----------ceeeEEeccCCCCcEEEccccccC--------------CCCCcCCCCceEEEeccC--------
Confidence 983311 1267777776444 5555553322 356799999999988222
Q ss_pred ccccCCeEEEEecCCCCCCCceEEeecccccCCeeecc
Q 002209 428 EVTPRDIIYTQQAEPVQGEGPEILHKLDLRYGGISWCD 465 (953)
Q Consensus 428 ~~~~~~~l~~~d~~~~~g~~~~~l~~~~~~~~~~~~Sp 465 (953)
.....++.+.. ++.....+....+....++|+|
T Consensus 391 --~~~~~l~~~s~---~g~~~~~~~~~~~~~~~p~w~~ 423 (425)
T COG0823 391 --GGGSVLSLVSL---DGRVSRPLPLADGDVRVPAWSP 423 (425)
T ss_pred --CCCceEEEeec---cceeEEEEeccCcceecccccC
Confidence 12445666663 5544444544455666677765
No 49
>PRK10162 acetyl esterase; Provisional
Probab=99.73 E-value=3.4e-16 Score=169.73 Aligned_cols=231 Identities=17% Similarity=0.168 Sum_probs=157.5
Q ss_pred ceEEEEEEcCCCcEEEEEEEcCCCCCCCCCCCccEEEEeCCCCCcCcCCCCcccCCCCCCCCccchHHHHHHH-cCcEEE
Q 002209 638 QKELIKYQRKDGVQLSATLYLPPGYDPSKDGPLPCLFWSYPGEFKSKDAAGQVRGSPNEFPRIGSTSVLLWLA-RGFAIL 716 (953)
Q Consensus 638 ~~~~~~~~~~dg~~~~~~l~~P~~~~~~~~~~~P~vv~~hGg~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~-~G~~V~ 716 (953)
..+.++++..+| .+.+.+|.|.. .+.|+|||+|||.+.. ++...+ ......|+. .|+.|+
T Consensus 56 ~~~~~~i~~~~g-~i~~~~y~P~~------~~~p~vv~~HGGg~~~--------g~~~~~----~~~~~~la~~~g~~Vv 116 (318)
T PRK10162 56 ATRAYMVPTPYG-QVETRLYYPQP------DSQATLFYLHGGGFIL--------GNLDTH----DRIMRLLASYSGCTVI 116 (318)
T ss_pred eEEEEEEecCCC-ceEEEEECCCC------CCCCEEEEEeCCcccC--------CCchhh----hHHHHHHHHHcCCEEE
Confidence 467788887777 59999999953 1269999999985432 222222 134556666 599999
Q ss_pred EcCCCCCCCCCChhhhhhhHHHHHHHHHHHHHHHHHc---CCCCCCcEEEEEeChHHHHHHHHHHhC------CCcccEE
Q 002209 717 GGPTTPIIGEGDEEANDRFVEQLVACAEAAVEEVVRR---GVAHPSKIAVGGHSYGAFMTANLLAHA------PHLFCCG 787 (953)
Q Consensus 717 ~~~~~~~~G~G~~~~~~~~~~~~~~D~~~~~~~l~~~---~~~d~~~i~l~G~S~GG~~a~~~a~~~------p~~~~a~ 787 (953)
.++|+.... ..++..++|+.++++|+.++ ..+|+++|+|+|+|+||++++.++.+. +..++++
T Consensus 117 ~vdYrlape--------~~~p~~~~D~~~a~~~l~~~~~~~~~d~~~i~l~G~SaGG~la~~~a~~~~~~~~~~~~~~~~ 188 (318)
T PRK10162 117 GIDYTLSPE--------ARFPQAIEEIVAVCCYFHQHAEDYGINMSRIGFAGDSAGAMLALASALWLRDKQIDCGKVAGV 188 (318)
T ss_pred EecCCCCCC--------CCCCCcHHHHHHHHHHHHHhHHHhCCChhHEEEEEECHHHHHHHHHHHHHHhcCCCccChhhe
Confidence 988864322 12345678999999998764 347899999999999999999998753 3568999
Q ss_pred EEcccCCCCCCCCcC--ccccc-chhhhhHHH----HH-----hcCccccc--CCC---CCcEEEEEeCCCCCCCCchHH
Q 002209 788 IARSGAYNRTLTPFG--FQNED-RTLWEATST----YV-----EMSPFMSA--NKL---KKPILLVHGEEDNNSGTLTMQ 850 (953)
Q Consensus 788 v~~~~~~d~~~~~~~--~~~~~-~~~~~~~~~----~~-----~~sp~~~~--~~i---~~P~Li~~G~~D~~v~~~~~~ 850 (953)
++++|+++....... +.... .......+. |. ..+|.... ..+ -.|+||++|+.|.. ..+
T Consensus 189 vl~~p~~~~~~~~s~~~~~~~~~~l~~~~~~~~~~~y~~~~~~~~~p~~~p~~~~l~~~lPp~~i~~g~~D~L----~de 264 (318)
T PRK10162 189 LLWYGLYGLRDSVSRRLLGGVWDGLTQQDLQMYEEAYLSNDADRESPYYCLFNNDLTRDVPPCFIAGAEFDPL----LDD 264 (318)
T ss_pred EEECCccCCCCChhHHHhCCCccccCHHHHHHHHHHhCCCccccCCcccCcchhhhhcCCCCeEEEecCCCcC----cCh
Confidence 999998774321100 00000 000001111 10 11232111 223 36999999999987 468
Q ss_pred HHHHHHHHHhCCCcEEEEEeCCCCccCCCc----ccHHHHHHHHHHHHHHhcc
Q 002209 851 SDRFFNALKGHGALCRLVILPFESHGYAAR----ESIMHVLWETDRWLQKYCV 899 (953)
Q Consensus 851 ~~~~~~~l~~~g~~~~~~~~~~~~H~~~~~----~~~~~~~~~i~~fl~~~l~ 899 (953)
++.+.++|++.|+++++++++|+.|+|... +.....++.+.+||.++++
T Consensus 265 ~~~~~~~L~~aGv~v~~~~~~g~~H~f~~~~~~~~~a~~~~~~~~~~l~~~~~ 317 (318)
T PRK10162 265 SRLLYQTLAAHQQPCEFKLYPGTLHAFLHYSRMMDTADDALRDGAQFFTAQLK 317 (318)
T ss_pred HHHHHHHHHHcCCCEEEEEECCCceehhhccCchHHHHHHHHHHHHHHHHHhc
Confidence 999999999999999999999999998532 2345778889999998764
No 50
>PLN02652 hydrolase; alpha/beta fold family protein
Probab=99.72 E-value=7.3e-16 Score=170.63 Aligned_cols=231 Identities=15% Similarity=0.128 Sum_probs=157.8
Q ss_pred eEEEEEEcCCCcEEEEEEEcCCCCCCCCCCCccEEEEeCCCCCcCcCCCCcccCCCCCCCCccchHHHHHHHcCcEEEEc
Q 002209 639 KELIKYQRKDGVQLSATLYLPPGYDPSKDGPLPCLFWSYPGEFKSKDAAGQVRGSPNEFPRIGSTSVLLWLARGFAILGG 718 (953)
Q Consensus 639 ~~~~~~~~~dg~~~~~~l~~P~~~~~~~~~~~P~vv~~hGg~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~G~~V~~~ 718 (953)
.....+...++..+++..|.|.. ..+.|+||++||.... .......+..|+++||.|++
T Consensus 110 ~~~~~~~~~~~~~l~~~~~~p~~-----~~~~~~Vl~lHG~~~~---------------~~~~~~~a~~L~~~Gy~V~~- 168 (395)
T PLN02652 110 WATSLFYGARRNALFCRSWAPAA-----GEMRGILIIIHGLNEH---------------SGRYLHFAKQLTSCGFGVYA- 168 (395)
T ss_pred EEEEEEECCCCCEEEEEEecCCC-----CCCceEEEEECCchHH---------------HHHHHHHHHHHHHCCCEEEE-
Confidence 45566777888899999998853 1236899999995211 11112456678889999999
Q ss_pred CCCCCCCCCChhhhh---hhHHHHHHHHHHHHHHHHHcCCCCCCcEEEEEeChHHHHHHHHHHhCCC---cccEEEEccc
Q 002209 719 PTTPIIGEGDEEAND---RFVEQLVACAEAAVEEVVRRGVAHPSKIAVGGHSYGAFMTANLLAHAPH---LFCCGIARSG 792 (953)
Q Consensus 719 ~~~~~~G~G~~~~~~---~~~~~~~~D~~~~~~~l~~~~~~d~~~i~l~G~S~GG~~a~~~a~~~p~---~~~a~v~~~~ 792 (953)
++.+|+|.+.... .......+|+.++++++.... +..++.|+||||||.+++.++. +|+ +++++|+.+|
T Consensus 169 --~D~rGhG~S~~~~~~~~~~~~~~~Dl~~~l~~l~~~~--~~~~i~lvGhSmGG~ial~~a~-~p~~~~~v~glVL~sP 243 (395)
T PLN02652 169 --MDWIGHGGSDGLHGYVPSLDYVVEDTEAFLEKIRSEN--PGVPCFLFGHSTGGAVVLKAAS-YPSIEDKLEGIVLTSP 243 (395)
T ss_pred --eCCCCCCCCCCCCCCCcCHHHHHHHHHHHHHHHHHhC--CCCCEEEEEECHHHHHHHHHHh-ccCcccccceEEEECc
Confidence 5556777765432 235667889999999987652 2347999999999999987764 553 7999999988
Q ss_pred CCCCCCC---------------C-cCcccc--c-chhhhhH----HHH------------------Hhc-C-cccccCCC
Q 002209 793 AYNRTLT---------------P-FGFQNE--D-RTLWEAT----STY------------------VEM-S-PFMSANKL 829 (953)
Q Consensus 793 ~~d~~~~---------------~-~~~~~~--~-~~~~~~~----~~~------------------~~~-s-p~~~~~~i 829 (953)
....... + +.+... . .....++ ..+ .+. . ....+.++
T Consensus 244 ~l~~~~~~~~~~~~~~l~~~~~p~~~~~~~~~~~~~~s~~~~~~~~~~~dp~~~~g~i~~~~~~~~~~~~~~l~~~L~~I 323 (395)
T PLN02652 244 ALRVKPAHPIVGAVAPIFSLVAPRFQFKGANKRGIPVSRDPAALLAKYSDPLVYTGPIRVRTGHEILRISSYLTRNFKSV 323 (395)
T ss_pred ccccccchHHHHHHHHHHHHhCCCCcccCcccccCCcCCCHHHHHHHhcCCCcccCCchHHHHHHHHHHHHHHHhhcccC
Confidence 6542210 0 000000 0 0000000 000 000 0 12345678
Q ss_pred CCcEEEEEeCCCCCCCCchHHHHHHHHHHHhCCCcEEEEEeCCCCccCCCcccHHHHHHHHHHHHHHhcc
Q 002209 830 KKPILLVHGEEDNNSGTLTMQSDRFFNALKGHGALCRLVILPFESHGYAARESIMHVLWETDRWLQKYCV 899 (953)
Q Consensus 830 ~~P~Li~~G~~D~~v~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~H~~~~~~~~~~~~~~i~~fl~~~l~ 899 (953)
++|+|++||++|.++| ++.++++++++... .+++++||+++|........+.+++.+.+||+.++.
T Consensus 324 ~vPvLIi~G~~D~vvp--~~~a~~l~~~~~~~--~k~l~~~~ga~H~l~~e~~~e~v~~~I~~FL~~~~~ 389 (395)
T PLN02652 324 TVPFMVLHGTADRVTD--PLASQDLYNEAASR--HKDIKLYDGFLHDLLFEPEREEVGRDIIDWMEKRLD 389 (395)
T ss_pred CCCEEEEEeCCCCCCC--HHHHHHHHHhcCCC--CceEEEECCCeEEeccCCCHHHHHHHHHHHHHHHhh
Confidence 9999999999999998 99999999987543 357788999999976555788999999999999874
No 51
>COG4946 Uncharacterized protein related to the periplasmic component of the Tol biopolymer transport system [Function unknown]
Probab=99.70 E-value=9.1e-15 Score=151.32 Aligned_cols=126 Identities=17% Similarity=0.102 Sum_probs=100.0
Q ss_pred ceEEEEEc-CCceeEeCCC-CcccccccCCCCcEEEEEEecCCccccccCCCCCcceEEEeccCceEEEeccCCCcccCC
Q 002209 314 TQLVLVSL-DGTVKEIGPP-AVYTSLDPSPDEKYILISSIHRPYSFIVPCGRFPRQVGVWTTDGIFVRELCDLPLAEDIP 391 (953)
Q Consensus 314 ~~l~~~~~-~g~~~~l~~~-~~~~~~~~SpDG~~l~~~~~~~~~~~~~~~~~~~~~i~~~d~~g~~~~~l~~~~~~~~~p 391 (953)
..|-+++. +|+++++..+ +.+..+..|||||+++++..+ .+||++|++++.++.+.....
T Consensus 382 D~l~iyd~~~~e~kr~e~~lg~I~av~vs~dGK~~vvaNdr-------------~el~vididngnv~~idkS~~----- 443 (668)
T COG4946 382 DKLGIYDKDGGEVKRIEKDLGNIEAVKVSPDGKKVVVANDR-------------FELWVIDIDNGNVRLIDKSEY----- 443 (668)
T ss_pred ceEEEEecCCceEEEeeCCccceEEEEEcCCCcEEEEEcCc-------------eEEEEEEecCCCeeEeccccc-----
Confidence 46888999 8898999888 999999999999999887633 389999999988887665221
Q ss_pred ccccccccCccceeeccCCCCceEEEEeccCCCcccccccCCeEEEEecCCCCCCCceEEeecccccCCeeeccCCceEE
Q 002209 392 IAFNSVRKGMRSINWRSDKPSTLYWAETQDGGDAKVEVTPRDIIYTQQAEPVQGEGPEILHKLDLRYGGISWCDDSLALV 471 (953)
Q Consensus 392 ~~~~~~~~~~~~~~wspDg~~i~~~~~~~~~~~~~~~~~~~~~l~~~d~~~~~g~~~~~l~~~~~~~~~~~~SpDg~~l~ 471 (953)
+-+..+.|+|+++.|+|... ++ --...|.++|+ .+++...+|.......+++|.|||++|+
T Consensus 444 -------~lItdf~~~~nsr~iAYafP--~g-------y~tq~Iklydm---~~~Kiy~vTT~ta~DfsPaFD~d~ryLY 504 (668)
T COG4946 444 -------GLITDFDWHPNSRWIAYAFP--EG-------YYTQSIKLYDM---DGGKIYDVTTPTAYDFSPAFDPDGRYLY 504 (668)
T ss_pred -------ceeEEEEEcCCceeEEEecC--cc-------eeeeeEEEEec---CCCeEEEecCCcccccCcccCCCCcEEE
Confidence 22357899999999999822 11 12346888886 7888888888877778899999999999
Q ss_pred EEEec
Q 002209 472 YESWY 476 (953)
Q Consensus 472 ~~~~~ 476 (953)
|.+.+
T Consensus 505 fLs~R 509 (668)
T COG4946 505 FLSAR 509 (668)
T ss_pred EEecc
Confidence 98854
No 52
>COG3458 Acetyl esterase (deacetylase) [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=99.70 E-value=2.1e-16 Score=153.79 Aligned_cols=232 Identities=16% Similarity=0.132 Sum_probs=160.4
Q ss_pred CCceEEEEEEcCCCcEEEEEEEcCCCCCCCCCCCccEEEEeCCCCCcCcCCCCcccCCCCCCCCccchHHHHHHHcCcEE
Q 002209 636 SLQKELIKYQRKDGVQLSATLYLPPGYDPSKDGPLPCLFWSYPGEFKSKDAAGQVRGSPNEFPRIGSTSVLLWLARGFAI 715 (953)
Q Consensus 636 ~~~~~~~~~~~~dg~~~~~~l~~P~~~~~~~~~~~P~vv~~hGg~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~G~~V 715 (953)
..++-.++|++.+|.+|.+|+.+|..- +++.|+||..||.....+ -+.....|+..||+|
T Consensus 53 ~ve~ydvTf~g~~g~rI~gwlvlP~~~----~~~~P~vV~fhGY~g~~g----------------~~~~~l~wa~~Gyav 112 (321)
T COG3458 53 RVEVYDVTFTGYGGARIKGWLVLPRHE----KGKLPAVVQFHGYGGRGG----------------EWHDMLHWAVAGYAV 112 (321)
T ss_pred ceEEEEEEEeccCCceEEEEEEeeccc----CCccceEEEEeeccCCCC----------------CccccccccccceeE
Confidence 345678999999999999999999752 356999999999421111 012234578999999
Q ss_pred EEcCCCCCCCCCC----hhh----------------hhhhHHHHHHHHHHHHHHHHHcCCCCCCcEEEEEeChHHHHHHH
Q 002209 716 LGGPTTPIIGEGD----EEA----------------NDRFVEQLVACAEAAVEEVVRRGVAHPSKIAVGGHSYGAFMTAN 775 (953)
Q Consensus 716 ~~~~~~~~~G~G~----~~~----------------~~~~~~~~~~D~~~~~~~l~~~~~~d~~~i~l~G~S~GG~~a~~ 775 (953)
+.++.+|..+... ... +.-++...+.|+..+++-+...+.+|.+||++.|.|.||.+++.
T Consensus 113 f~MdvRGQg~~~~dt~~~p~~~s~pG~mtrGilD~kd~yyyr~v~~D~~~ave~~~sl~~vde~Ri~v~G~SqGGglala 192 (321)
T COG3458 113 FVMDVRGQGSSSQDTADPPGGPSDPGFMTRGILDRKDTYYYRGVFLDAVRAVEILASLDEVDEERIGVTGGSQGGGLALA 192 (321)
T ss_pred EEEecccCCCccccCCCCCCCCcCCceeEeecccCCCceEEeeehHHHHHHHHHHhccCccchhheEEeccccCchhhhh
Confidence 9977666544311 000 01124456899999999999999999999999999999999999
Q ss_pred HHHhCCCcccEEEEcccCCCCCCCCcCcccc------cchh-------hhhHHHHHhcCcccccCCCCCcEEEEEeCCCC
Q 002209 776 LLAHAPHLFCCGIARSGAYNRTLTPFGFQNE------DRTL-------WEATSTYVEMSPFMSANKLKKPILLVHGEEDN 842 (953)
Q Consensus 776 ~a~~~p~~~~a~v~~~~~~d~~~~~~~~~~~------~~~~-------~~~~~~~~~~sp~~~~~~i~~P~Li~~G~~D~ 842 (953)
+++.. .++|++++..|+....---+....+ .... -+-.+.+.-++-.+.+.+++.|+|+..|-.|.
T Consensus 193 aaal~-~rik~~~~~~Pfl~df~r~i~~~~~~~ydei~~y~k~h~~~e~~v~~TL~yfD~~n~A~RiK~pvL~svgL~D~ 271 (321)
T COG3458 193 AAALD-PRIKAVVADYPFLSDFPRAIELATEGPYDEIQTYFKRHDPKEAEVFETLSYFDIVNLAARIKVPVLMSVGLMDP 271 (321)
T ss_pred hhhcC-hhhhcccccccccccchhheeecccCcHHHHHHHHHhcCchHHHHHHHHhhhhhhhHHHhhccceEEeecccCC
Confidence 99998 4799999999976521100000000 0000 01112223334456778899999999999999
Q ss_pred CCCCchHHHHHHHHHHHhCCCcEEEEEeCCCCccCCCcccHHHHHHHHHHHHHHh
Q 002209 843 NSGTLTMQSDRFFNALKGHGALCRLVILPFESHGYAARESIMHVLWETDRWLQKY 897 (953)
Q Consensus 843 ~v~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~H~~~~~~~~~~~~~~i~~fl~~~ 897 (953)
+|| +.-....|+++... +++.+||--+|.-.. ....++++.|+..-
T Consensus 272 vcp--PstqFA~yN~l~~~---K~i~iy~~~aHe~~p----~~~~~~~~~~l~~l 317 (321)
T COG3458 272 VCP--PSTQFAAYNALTTS---KTIEIYPYFAHEGGP----GFQSRQQVHFLKIL 317 (321)
T ss_pred CCC--ChhhHHHhhcccCC---ceEEEeeccccccCc----chhHHHHHHHHHhh
Confidence 998 88777888887654 677888877786532 22344567777653
No 53
>PRK05371 x-prolyl-dipeptidyl aminopeptidase; Provisional
Probab=99.69 E-value=3.8e-15 Score=177.08 Aligned_cols=193 Identities=20% Similarity=0.224 Sum_probs=144.6
Q ss_pred hHHHHHHHcCcEEEEcCCCCCCCCCChhhhh-hhHHHHHHHHHHHHHHHHHc---------------CCCCCCcEEEEEe
Q 002209 703 TSVLLWLARGFAILGGPTTPIIGEGDEEAND-RFVEQLVACAEAAVEEVVRR---------------GVAHPSKIAVGGH 766 (953)
Q Consensus 703 ~~~~~la~~G~~V~~~~~~~~~G~G~~~~~~-~~~~~~~~D~~~~~~~l~~~---------------~~~d~~~i~l~G~ 766 (953)
....+|+.+||+|+..+ .+|.|.|.+.. .+...+..|..++|+||..+ ++. ..+|+++|.
T Consensus 270 ~~~~~~~~rGYaVV~~D---~RGtg~SeG~~~~~~~~E~~D~~~vIeWl~~~~~~~~d~~~~~~~kq~Ws-nGkVGm~G~ 345 (767)
T PRK05371 270 SLNDYFLPRGFAVVYVS---GIGTRGSDGCPTTGDYQEIESMKAVIDWLNGRATAYTDRTRGKEVKADWS-NGKVAMTGK 345 (767)
T ss_pred hHHHHHHhCCeEEEEEc---CCCCCCCCCcCccCCHHHHHHHHHHHHHHhhCCccccccccccccccCCC-CCeeEEEEE
Confidence 44578999999999944 45666665542 33478899999999999853 333 469999999
Q ss_pred ChHHHHHHHHHHhCCCcccEEEEcccCCCCCCC---------CcCccccc---------------------chhhh----
Q 002209 767 SYGAFMTANLLAHAPHLFCCGIARSGAYNRTLT---------PFGFQNED---------------------RTLWE---- 812 (953)
Q Consensus 767 S~GG~~a~~~a~~~p~~~~a~v~~~~~~d~~~~---------~~~~~~~~---------------------~~~~~---- 812 (953)
||||++++.+|+..|+.++|+|+.+++.++... +.++..+. ...++
T Consensus 346 SY~G~~~~~aAa~~pp~LkAIVp~a~is~~yd~yr~~G~~~~~~g~~ged~d~l~~~~~~r~~~~~~~~~~~~~~~~~~~ 425 (767)
T PRK05371 346 SYLGTLPNAVATTGVEGLETIIPEAAISSWYDYYRENGLVRAPGGYQGEDLDVLAELTYSRNLLAGDYLRHNEACEKLLA 425 (767)
T ss_pred cHHHHHHHHHHhhCCCcceEEEeeCCCCcHHHHhhcCCceeccCCcCCcchhhHHHHhhhcccCcchhhcchHHHHHHHh
Confidence 999999999999988899999999988764210 00110000 00000
Q ss_pred ------------hHHHHHhcCcccccCCCCCcEEEEEeCCCCCCCCchHHHHHHHHHHHhCCCcEEEEEeCCCCccCCCc
Q 002209 813 ------------ATSTYVEMSPFMSANKLKKPILLVHGEEDNNSGTLTMQSDRFFNALKGHGALCRLVILPFESHGYAAR 880 (953)
Q Consensus 813 ------------~~~~~~~~sp~~~~~~i~~P~Li~~G~~D~~v~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~H~~~~~ 880 (953)
..+.|...+++.+++++++|+|++||..|.+|+ +.++.++|+++++.+++.++.+.++ +|.....
T Consensus 426 ~~~~~~~~~~~~y~~fW~~rn~~~~~~kIkvPvLlIhGw~D~~V~--~~~s~~ly~aL~~~g~pkkL~l~~g-~H~~~~~ 502 (767)
T PRK05371 426 ELTAAQDRKTGDYNDFWDDRNYLKDADKIKASVLVVHGLNDWNVK--PKQVYQWWDALPENGVPKKLFLHQG-GHVYPNN 502 (767)
T ss_pred hhhhhhhhcCCCccHHHHhCCHhhHhhCCCCCEEEEeeCCCCCCC--hHHHHHHHHHHHhcCCCeEEEEeCC-CccCCCc
Confidence 012234456777889999999999999999998 8999999999999899999987776 7976544
Q ss_pred ccHHHHHHHHHHHHHHhccCCC
Q 002209 881 ESIMHVLWETDRWLQKYCVSNT 902 (953)
Q Consensus 881 ~~~~~~~~~i~~fl~~~l~~~~ 902 (953)
.....+.+.+.+||++||+...
T Consensus 503 ~~~~d~~e~~~~Wfd~~LkG~~ 524 (767)
T PRK05371 503 WQSIDFRDTMNAWFTHKLLGID 524 (767)
T ss_pred hhHHHHHHHHHHHHHhccccCC
Confidence 4456778899999999998654
No 54
>COG2267 PldB Lysophospholipase [Lipid metabolism]
Probab=99.67 E-value=4.2e-15 Score=158.14 Aligned_cols=229 Identities=19% Similarity=0.176 Sum_probs=160.1
Q ss_pred EEEEEEcCCCcEEEEEEEcCCCCCCCCCCCccEEEEeCCCCCcCcCCCCcccCCCCCCCCccchHHHHHHHcCcEEEEcC
Q 002209 640 ELIKYQRKDGVQLSATLYLPPGYDPSKDGPLPCLFWSYPGEFKSKDAAGQVRGSPNEFPRIGSTSVLLWLARGFAILGGP 719 (953)
Q Consensus 640 ~~~~~~~~dg~~~~~~l~~P~~~~~~~~~~~P~vv~~hGg~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~G~~V~~~~ 719 (953)
....+.+.||..+....+.++.. +..+||++||.. .+...+...+..|.++||.|++
T Consensus 10 ~~~~~~~~d~~~~~~~~~~~~~~------~~g~Vvl~HG~~---------------Eh~~ry~~la~~l~~~G~~V~~-- 66 (298)
T COG2267 10 TEGYFTGADGTRLRYRTWAAPEP------PKGVVVLVHGLG---------------EHSGRYEELADDLAARGFDVYA-- 66 (298)
T ss_pred ccceeecCCCceEEEEeecCCCC------CCcEEEEecCch---------------HHHHHHHHHHHHHHhCCCEEEE--
Confidence 44567778999999999987641 237899999952 2333344566778999999999
Q ss_pred CCCCCCCCChh-hh---hhhHHHHHHHHHHHHHHHHHcCCCCCCcEEEEEeChHHHHHHHHHHhCCCcccEEEEcccCCC
Q 002209 720 TTPIIGEGDEE-AN---DRFVEQLVACAEAAVEEVVRRGVAHPSKIAVGGHSYGAFMTANLLAHAPHLFCCGIARSGAYN 795 (953)
Q Consensus 720 ~~~~~G~G~~~-~~---~~~~~~~~~D~~~~~~~l~~~~~~d~~~i~l~G~S~GG~~a~~~a~~~p~~~~a~v~~~~~~d 795 (953)
+|.+|+|.+. .. -..+...+.|+.+.++.+.+.. -..+++|+||||||.+++.++.+++..++++|+.+|++.
T Consensus 67 -~D~RGhG~S~r~~rg~~~~f~~~~~dl~~~~~~~~~~~--~~~p~~l~gHSmGg~Ia~~~~~~~~~~i~~~vLssP~~~ 143 (298)
T COG2267 67 -LDLRGHGRSPRGQRGHVDSFADYVDDLDAFVETIAEPD--PGLPVFLLGHSMGGLIALLYLARYPPRIDGLVLSSPALG 143 (298)
T ss_pred -ecCCCCCCCCCCCcCCchhHHHHHHHHHHHHHHHhccC--CCCCeEEEEeCcHHHHHHHHHHhCCccccEEEEECcccc
Confidence 7778888885 32 2235677788888877776541 236899999999999999999999999999999999876
Q ss_pred CCC--C-----------------CcCccc----ccchhh--hh---HHHHHhcCc-----------------------cc
Q 002209 796 RTL--T-----------------PFGFQN----EDRTLW--EA---TSTYVEMSP-----------------------FM 824 (953)
Q Consensus 796 ~~~--~-----------------~~~~~~----~~~~~~--~~---~~~~~~~sp-----------------------~~ 824 (953)
... . .+.+.. ....-| .+ .+.|. .+| ..
T Consensus 144 l~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~sr~~~~~~~~~-~dP~~~~~~~~~~w~~~~~~a~~~~~~~ 222 (298)
T COG2267 144 LGGAILRLILARLALKLLGRIRPKLPVDSNLLEGVLTDDLSRDPAEVAAYE-ADPLIGVGGPVSRWVDLALLAGRVPALR 222 (298)
T ss_pred CChhHHHHHHHHHhcccccccccccccCcccccCcCcchhhcCHHHHHHHh-cCCccccCCccHHHHHHHHHhhcccchh
Confidence 441 0 011111 000000 00 11111 112 12
Q ss_pred ccCCCCCcEEEEEeCCCCCCCCch-HHHHHHHHHHHhCCCcEEEEEeCCCCccCCCcccH--HHHHHHHHHHHHHhcc
Q 002209 825 SANKLKKPILLVHGEEDNNSGTLT-MQSDRFFNALKGHGALCRLVILPFESHGYAARESI--MHVLWETDRWLQKYCV 899 (953)
Q Consensus 825 ~~~~i~~P~Li~~G~~D~~v~~~~-~~~~~~~~~l~~~g~~~~~~~~~~~~H~~~~~~~~--~~~~~~i~~fl~~~l~ 899 (953)
...+++.|+||+||++|.+|+ . +...++++++.... +++++++|+.|......+. +.+++.+.+||.++..
T Consensus 223 ~~~~~~~PvLll~g~~D~vv~--~~~~~~~~~~~~~~~~--~~~~~~~g~~He~~~E~~~~r~~~~~~~~~~l~~~~~ 296 (298)
T COG2267 223 DAPAIALPVLLLQGGDDRVVD--NVEGLARFFERAGSPD--KELKVIPGAYHELLNEPDRAREEVLKDILAWLAEALP 296 (298)
T ss_pred ccccccCCEEEEecCCCcccc--CcHHHHHHHHhcCCCC--ceEEecCCcchhhhcCcchHHHHHHHHHHHHHHhhcc
Confidence 245678999999999999986 3 55566666654432 6899999999998877777 8899999999998763
No 55
>COG1647 Esterase/lipase [General function prediction only]
Probab=99.67 E-value=1.7e-15 Score=143.68 Aligned_cols=198 Identities=15% Similarity=0.121 Sum_probs=141.9
Q ss_pred cEEEEeCCCCCcCcCCCCcccCCCCCCCCccchHHHHHHHcCcEEEEcCCCCCCCCCChhh--hhhhHHHHHHHHHHHHH
Q 002209 671 PCLFWSYPGEFKSKDAAGQVRGSPNEFPRIGSTSVLLWLARGFAILGGPTTPIIGEGDEEA--NDRFVEQLVACAEAAVE 748 (953)
Q Consensus 671 P~vv~~hGg~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~G~~V~~~~~~~~~G~G~~~~--~~~~~~~~~~D~~~~~~ 748 (953)
-.|+++||.. |++... ....++|.++||.|.+|.+ .|+|.... -........+|+.++.+
T Consensus 16 ~AVLllHGFT-----------Gt~~Dv----r~Lgr~L~e~GyTv~aP~y---pGHG~~~e~fl~t~~~DW~~~v~d~Y~ 77 (243)
T COG1647 16 RAVLLLHGFT-----------GTPRDV----RMLGRYLNENGYTVYAPRY---PGHGTLPEDFLKTTPRDWWEDVEDGYR 77 (243)
T ss_pred EEEEEEeccC-----------CCcHHH----HHHHHHHHHCCceEecCCC---CCCCCCHHHHhcCCHHHHHHHHHHHHH
Confidence 5788899942 222222 2445678889999999777 46665421 22334677889999999
Q ss_pred HHHHcCCCCCCcEEEEEeChHHHHHHHHHHhCCCcccEEEEcccCCCCCCCCcCccc-----------ccchhhhhHHHH
Q 002209 749 EVVRRGVAHPSKIAVGGHSYGAFMTANLLAHAPHLFCCGIARSGAYNRTLTPFGFQN-----------EDRTLWEATSTY 817 (953)
Q Consensus 749 ~l~~~~~~d~~~i~l~G~S~GG~~a~~~a~~~p~~~~a~v~~~~~~d~~~~~~~~~~-----------~~~~~~~~~~~~ 817 (953)
+|.+.++ +.|+++|.||||.+|+.++.++| .+++|..|+..+.......+.. +........+.+
T Consensus 78 ~L~~~gy---~eI~v~GlSmGGv~alkla~~~p--~K~iv~m~a~~~~k~~~~iie~~l~y~~~~kk~e~k~~e~~~~e~ 152 (243)
T COG1647 78 DLKEAGY---DEIAVVGLSMGGVFALKLAYHYP--PKKIVPMCAPVNVKSWRIIIEGLLEYFRNAKKYEGKDQEQIDKEM 152 (243)
T ss_pred HHHHcCC---CeEEEEeecchhHHHHHHHhhCC--ccceeeecCCcccccchhhhHHHHHHHHHhhhccCCCHHHHHHHH
Confidence 9998765 58999999999999999999997 7888888877653221111000 000000001111
Q ss_pred HhcC----------------cccccCCCCCcEEEEEeCCCCCCCCchHHHHHHHHHHHhCCCcEEEEEeCCCCccCCCcc
Q 002209 818 VEMS----------------PFMSANKLKKPILLVHGEEDNNSGTLTMQSDRFFNALKGHGALCRLVILPFESHGYAARE 881 (953)
Q Consensus 818 ~~~s----------------p~~~~~~i~~P~Li~~G~~D~~v~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~H~~~~~~ 881 (953)
..+. ....+++|..|+||++|.+|..|| .+.+..+|+.+... +.++.+|++.||.++...
T Consensus 153 ~~~~~~~~~~~~~~~~~i~~~~~~~~~I~~pt~vvq~~~D~mv~--~~sA~~Iy~~v~s~--~KeL~~~e~SgHVIt~D~ 228 (243)
T COG1647 153 KSYKDTPMTTTAQLKKLIKDARRSLDKIYSPTLVVQGRQDEMVP--AESANFIYDHVESD--DKELKWLEGSGHVITLDK 228 (243)
T ss_pred HHhhcchHHHHHHHHHHHHHHHhhhhhcccchhheecccCCCCC--HHHHHHHHHhccCC--cceeEEEccCCceeecch
Confidence 1111 234567889999999999999999 88888898888654 568999999999999888
Q ss_pred cHHHHHHHHHHHHH
Q 002209 882 SIMHVLWETDRWLQ 895 (953)
Q Consensus 882 ~~~~~~~~i~~fl~ 895 (953)
.++.+.+.++.||+
T Consensus 229 Erd~v~e~V~~FL~ 242 (243)
T COG1647 229 ERDQVEEDVITFLE 242 (243)
T ss_pred hHHHHHHHHHHHhh
Confidence 89999999999986
No 56
>COG0823 TolB Periplasmic component of the Tol biopolymer transport system [Intracellular trafficking and secretion]
Probab=99.67 E-value=8.3e-15 Score=161.88 Aligned_cols=219 Identities=16% Similarity=0.106 Sum_probs=160.2
Q ss_pred CCCcceEEEEECCCCceeecccCCCccccccccceEEecCCeEEEEEecCCCCCCCCCCCCCCCCceeecCCCccccchh
Q 002209 215 SSSKLRVWVADVDTGKARPLFQSPDIYLNAIFDNFVWVNNSTLLVCTIPLLRGDPPKKPLVPLGPKMQSNEKRDIIQVRT 294 (953)
Q Consensus 215 ~~~~~~l~~~d~~~g~~~~lt~~~~~~~~~~~~~~~wspDg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 294 (953)
+....+||+.|-++-..+.++..... +..+.|+||++.|+|..-.
T Consensus 169 ~~~~~~l~~~D~dg~~~~~l~~~~~~-----~~~p~ws~~~~~~~y~~f~------------------------------ 213 (425)
T COG0823 169 GPLPYELALGDYDGYNQQKLTDSGSL-----ILTPAWSPDGKKLAYVSFE------------------------------ 213 (425)
T ss_pred CCCCceEEEEccCCcceeEecccCcc-----eeccccCcCCCceEEEEEe------------------------------
Confidence 45578899999886556666554432 5689999999999988211
Q ss_pred hhhhcCCcchhhhhhhhccceEEEEEc-CCceeEeCCC-CcccccccCCCCcEEEEEEecCCccccccCCCCCcceEEEe
Q 002209 295 FQDLLKDEYDEDLFDYYATTQLVLVSL-DGTVKEIGPP-AVYTSLDPSPDEKYILISSIHRPYSFIVPCGRFPRQVGVWT 372 (953)
Q Consensus 295 ~~~~~~~~~d~~~~~~~~~~~l~~~~~-~g~~~~l~~~-~~~~~~~~SpDG~~l~~~~~~~~~~~~~~~~~~~~~i~~~d 372 (953)
.. +..++|++++ +|+..++.+. +....++|||||++|+|+..++ ...+||++|
T Consensus 214 --------~~-------~~~~i~~~~l~~g~~~~i~~~~g~~~~P~fspDG~~l~f~~~rd----------g~~~iy~~d 268 (425)
T COG0823 214 --------LG-------GCPRIYYLDLNTGKRPVILNFNGNNGAPAFSPDGSKLAFSSSRD----------GSPDIYLMD 268 (425)
T ss_pred --------cC-------CCceEEEEeccCCccceeeccCCccCCccCCCCCCEEEEEECCC----------CCccEEEEc
Confidence 00 1257999999 7766666554 7778899999999999999654 234899999
Q ss_pred ccCceEEEeccCCCcccCCccccccccCccceeeccCCCCceEEEEeccCCCcccccccCCeEEEEecCCCCCCCceEEe
Q 002209 373 TDGIFVRELCDLPLAEDIPIAFNSVRKGMRSINWRSDKPSTLYWAETQDGGDAKVEVTPRDIIYTQQAEPVQGEGPEILH 452 (953)
Q Consensus 373 ~~g~~~~~l~~~~~~~~~p~~~~~~~~~~~~~~wspDg~~i~~~~~~~~~~~~~~~~~~~~~l~~~d~~~~~g~~~~~l~ 452 (953)
++++..++|+...+.. ..+.|||||+.|+|..++ +++.+||++++ +|+..++++
T Consensus 269 l~~~~~~~Lt~~~gi~-------------~~Ps~spdG~~ivf~Sdr----------~G~p~I~~~~~---~g~~~~riT 322 (425)
T COG0823 269 LDGKNLPRLTNGFGIN-------------TSPSWSPDGSKIVFTSDR----------GGRPQIYLYDL---EGSQVTRLT 322 (425)
T ss_pred CCCCcceecccCCccc-------------cCccCCCCCCEEEEEeCC----------CCCcceEEECC---CCCceeEee
Confidence 9998888888766543 257799999999999443 45668999996 888888888
Q ss_pred ecccccCCeeeccCCceEEEEEecccCceEEEEEcCCCCCCCcEEeecCCCccccCCCCCCCeEeccCCCEEEEEee
Q 002209 453 KLDLRYGGISWCDDSLALVYESWYKTRRTRTWVISPGSKDVAPRILFDRSSEDVYSDPGSPMMRRTSTGTYVIAKIK 529 (953)
Q Consensus 453 ~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~SpDG~~l~~~~~ 529 (953)
........+.|||||++|+|.... .+...+...++.++. ..+.++... .+ .. .+|+++|+.+.|...
T Consensus 323 ~~~~~~~~p~~SpdG~~i~~~~~~-~g~~~i~~~~~~~~~-~~~~lt~~~-~~-----e~--ps~~~ng~~i~~~s~ 389 (425)
T COG0823 323 FSGGGNSNPVWSPDGDKIVFESSS-GGQWDIDKNDLASGG-KIRILTSTY-LN-----ES--PSWAPNGRMIMFSSG 389 (425)
T ss_pred ccCCCCcCccCCCCCCEEEEEecc-CCceeeEEeccCCCC-cEEEccccc-cC-----CC--CCcCCCCceEEEecc
Confidence 877777789999999999998733 233567778777652 223333222 11 12 569999999999863
No 57
>PF00930 DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-terminal region; InterPro: IPR002469 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This domain defines serine peptidases belonging to MEROPS peptidase family S9 (clan SC), subfamily S9B (dipeptidyl-peptidase IV). The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. This domain is an alignment of the region to the N-terminal side of the active site, which is found in IPR001375 from INTERPRO. CD26 (3.4.14.5 from EC) is also called adenosine deaminase-binding protein (ADA-binding protein) or dipeptidylpeptidase IV (DPP IV ectoenzyme). The exopeptidase cleaves off N-terminal X-Pro or X-Ala dipeptides from polypeptides (dipeptidyl peptidase IV activity). CD26 serves as the costimulatory molecule in T cell activation and is an associated marker of autoimmune diseases, adenosine deaminase-deficiency and HIV pathogenesis. Dipeptidyl peptidase IV (DPP IV) is responsible for the removal of N-terminal dipeptides sequentially from polypeptides having unsubstituted N termini, provided that the penultimate residue is proline. The enzyme catalyses the reaction: Dipeptidyl-Polypeptide + H(2)O = Dipeptide + Polypeptide It is a type II membrane protein that forms a homodimer. CD molecules are leucocyte antigens on cell surfaces. CD antigens nomenclature is updated at Protein Reviews On The Web (http://prow.nci.nih.gov/). ; GO: 0006508 proteolysis, 0016020 membrane; PDB: 2RIP_A 3Q8W_B 2AJL_I 1TKR_B 1TK3_B 3C45_A 2G5P_A 3G0C_D 1R9M_C 1RWQ_A ....
Probab=99.67 E-value=1.5e-14 Score=159.60 Aligned_cols=297 Identities=16% Similarity=0.180 Sum_probs=183.2
Q ss_pred ccCCCeEEEEEeeccccCCCCcceEEEEECCCCceeecccCCCccccccccceEEecCCeEEEEEecCCCCCCCCCCCCC
Q 002209 197 SQDGKHLAFSIRIDAEDSSSSKLRVWVADVDTGKARPLFQSPDIYLNAIFDNFVWVNNSTLLVCTIPLLRGDPPKKPLVP 276 (953)
Q Consensus 197 SPDG~~laf~~~~~~~~~~~~~~~l~~~d~~~g~~~~lt~~~~~~~~~~~~~~~wspDg~~l~~~~~~~~~~~~~~~~~~ 276 (953)
||||++++|..+....-..+....+|++|+++++.++++..... ...+.|||||+.|+|.
T Consensus 1 S~d~~~~l~~~~~~~~~r~s~~~~y~i~d~~~~~~~~l~~~~~~-----~~~~~~sP~g~~~~~v--------------- 60 (353)
T PF00930_consen 1 SPDGKFVLFATNYTKQWRHSFKGDYYIYDIETGEITPLTPPPPK-----LQDAKWSPDGKYIAFV--------------- 60 (353)
T ss_dssp -TTSSEEEEEEEEEEESSSEEEEEEEEEETTTTEEEESS-EETT-----BSEEEE-SSSTEEEEE---------------
T ss_pred CCCCCeEEEEECcEEeeeeccceeEEEEecCCCceEECcCCccc-----cccceeecCCCeeEEE---------------
Confidence 89999999977755444445678899999999999999775221 6689999999999998
Q ss_pred CCCceeecCCCccccchhhhhhcCCcchhhhhhhhccceEEEEEc-CCceeEeCCCC-------------------cccc
Q 002209 277 LGPKMQSNEKRDIIQVRTFQDLLKDEYDEDLFDYYATTQLVLVSL-DGTVKEIGPPA-------------------VYTS 336 (953)
Q Consensus 277 ~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~l~~~~~-~g~~~~l~~~~-------------------~~~~ 336 (953)
...+||+.++ +++.++|+..+ ....
T Consensus 61 -----------------------------------~~~nly~~~~~~~~~~~lT~dg~~~i~nG~~dwvyeEEv~~~~~~ 105 (353)
T PF00930_consen 61 -----------------------------------RDNNLYLRDLATGQETQLTTDGEPGIYNGVPDWVYEEEVFDRRSA 105 (353)
T ss_dssp -----------------------------------ETTEEEEESSTTSEEEESES--TTTEEESB--HHHHHHTSSSSBS
T ss_pred -----------------------------------ecCceEEEECCCCCeEEeccccceeEEcCccceeccccccccccc
Confidence 3357888888 77777777642 1245
Q ss_pred cccCCCCcEEEEEEecCCccccccCCCCCcceEEEeccCceEEEeccCCCcccCCccccccccCccceeeccCCCCceEE
Q 002209 337 LDPSPDEKYILISSIHRPYSFIVPCGRFPRQVGVWTTDGIFVRELCDLPLAEDIPIAFNSVRKGMRSINWRSDKPSTLYW 416 (953)
Q Consensus 337 ~~~SpDG~~l~~~~~~~~~~~~~~~~~~~~~i~~~d~~g~~~~~l~~~~~~~~~p~~~~~~~~~~~~~~wspDg~~i~~~ 416 (953)
+.|||||++|||.+.+... -..+.+.+-..... . .| ....
T Consensus 106 ~~WSpd~~~la~~~~d~~~---------v~~~~~~~~~~~~~----~------yp---------------------~~~~ 145 (353)
T PF00930_consen 106 VWWSPDSKYLAFLRFDERE---------VPEYPLPDYSPPDS----Q------YP---------------------EVES 145 (353)
T ss_dssp EEE-TTSSEEEEEEEE-TT---------S-EEEEEEESSSTE----S------S----------------------EEEE
T ss_pred eEECCCCCEEEEEEECCcC---------CceEEeeccCCccc----c------CC---------------------cccc
Confidence 7799999999999966421 11222222211100 0 00 0000
Q ss_pred EEeccCCCcccccccCCeEEEEecCCCCCCCceEEee------cccccCCeeeccCCceEEE-EEecccCceEEEEEcCC
Q 002209 417 AETQDGGDAKVEVTPRDIIYTQQAEPVQGEGPEILHK------LDLRYGGISWCDDSLALVY-ESWYKTRRTRTWVISPG 489 (953)
Q Consensus 417 ~~~~~~~~~~~~~~~~~~l~~~d~~~~~g~~~~~l~~------~~~~~~~~~~SpDg~~l~~-~~~~~~~~~~l~~~d~~ 489 (953)
......|+. ...-.++++++ .+++...+.. .+..+..+.|++|++.|++ ..++......|..+|..
T Consensus 146 ~~YPk~G~~----np~v~l~v~~~---~~~~~~~~~~~~~~~~~~~yl~~v~W~~d~~~l~~~~~nR~q~~~~l~~~d~~ 218 (353)
T PF00930_consen 146 IRYPKAGDP----NPRVSLFVVDL---ASGKTTELDPPNSLNPQDYYLTRVGWSPDGKRLWVQWLNRDQNRLDLVLCDAS 218 (353)
T ss_dssp EE--BTTS-------EEEEEEEES---SSTCCCEE---HHHHTSSEEEEEEEEEETTEEEEEEEEETTSTEEEEEEEEEC
T ss_pred cccCCCCCc----CCceEEEEEEC---CCCcEEEeeeccccCCCccCcccceecCCCcEEEEEEcccCCCEEEEEEEECC
Confidence 001111111 12346888986 5555544321 2333456899999996554 44566666789999998
Q ss_pred CCCCCcEEeecCCCccccCCCCCCCeEec-cCCCEEEEEeeeccCCCcEEEEecCCCCCCCCCCeEEEEECCCCceEEEe
Q 002209 490 SKDVAPRILFDRSSEDVYSDPGSPMMRRT-STGTYVIAKIKKENDEGTYILLNGNGATPEGNIPFLDLFDINTGSKERIW 568 (953)
Q Consensus 490 ~~~~~~~~~~~~~~~~~~~~~~~p~~~~S-pDG~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~d~~~~~~~~l~ 568 (953)
++.. .....+.....+. ...+ +.|. ++|..+++.... .+..|||+++.+++..++||
T Consensus 219 tg~~-~~~~~e~~~~Wv~--~~~~-~~~~~~~~~~~l~~s~~------------------~G~~hly~~~~~~~~~~~lT 276 (353)
T PF00930_consen 219 TGET-RVVLEETSDGWVD--VYDP-PHFLGPDGNEFLWISER------------------DGYRHLYLYDLDGGKPRQLT 276 (353)
T ss_dssp TTTC-EEEEEEESSSSSS--SSSE-EEE-TTTSSEEEEEEET------------------TSSEEEEEEETTSSEEEESS
T ss_pred CCce-eEEEEecCCccee--eecc-cccccCCCCEEEEEEEc------------------CCCcEEEEEcccccceeccc
Confidence 7632 2222222222221 1112 3454 888887777641 13679999999999999999
Q ss_pred ccCcccceeeeEeeccCCccccccccCCEEEEEEecCC-CCceEEEEECC-CCCeeEEecCC
Q 002209 569 ESDKEKYYETTVALMSDQTEGDLYLNQLKILTSKESKT-ENTQYYIQSWP-DKKSCQITDFP 628 (953)
Q Consensus 569 ~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~-~p~~l~~~~~~-~g~~~~Lt~~~ 628 (953)
.++.. +..+ ..++.+++.++|...... .-.+||.+++. +++.+.||...
T Consensus 277 ~G~~~-----V~~i------~~~d~~~~~iyf~a~~~~p~~r~lY~v~~~~~~~~~~LT~~~ 327 (353)
T PF00930_consen 277 SGDWE-----VTSI------LGWDEDNNRIYFTANGDNPGERHLYRVSLDSGGEPKCLTCED 327 (353)
T ss_dssp -SSS------EEEE------EEEECTSSEEEEEESSGGTTSBEEEEEETTETTEEEESSTTS
T ss_pred cCcee-----eccc------ceEcCCCCEEEEEecCCCCCceEEEEEEeCCCCCeEeccCCC
Confidence 99865 2222 346778889998888643 34689999999 89999999654
No 58
>PF14583 Pectate_lyase22: Oligogalacturonate lyase; PDB: 3C5M_C 3PE7_A.
Probab=99.65 E-value=1.1e-13 Score=145.58 Aligned_cols=325 Identities=13% Similarity=0.118 Sum_probs=167.0
Q ss_pred cccceEeccCCCeEEEEEeeccccCCCCcceEEEEECCCCceeecccCCCccccccccceEEecCCeEEEEEecCCCCCC
Q 002209 190 KLNFVTWSQDGKHLAFSIRIDAEDSSSSKLRVWVADVDTGKARPLFQSPDIYLNAIFDNFVWVNNSTLLVCTIPLLRGDP 269 (953)
Q Consensus 190 ~~~~~~wSPDG~~laf~~~~~~~~~~~~~~~l~~~d~~~g~~~~lt~~~~~~~~~~~~~~~wspDg~~l~~~~~~~~~~~ 269 (953)
.-....|.+||++|+|.++ .++..+||++|+++++++|||..+... .....++|+++.|+|..
T Consensus 37 YF~~~~ft~dG~kllF~s~------~dg~~nly~lDL~t~~i~QLTdg~g~~----~~g~~~s~~~~~~~Yv~------- 99 (386)
T PF14583_consen 37 YFYQNCFTDDGRKLLFASD------FDGNRNLYLLDLATGEITQLTDGPGDN----TFGGFLSPDDRALYYVK------- 99 (386)
T ss_dssp -TTS--B-TTS-EEEEEE-------TTSS-EEEEEETTT-EEEE---SS-B-----TTT-EE-TTSSEEEEEE-------
T ss_pred eecCCCcCCCCCEEEEEec------cCCCcceEEEEcccCEEEECccCCCCC----ccceEEecCCCeEEEEE-------
Confidence 5667899999999999775 457999999999999999999876432 22567889999988761
Q ss_pred CCCCCCCCCCceeecCCCccccchhhhhhcCCcchhhhhhhhccceEEEEEc-CCceeEeCCC--Ccc--cccccCCCCc
Q 002209 270 PKKPLVPLGPKMQSNEKRDIIQVRTFQDLLKDEYDEDLFDYYATTQLVLVSL-DGTVKEIGPP--AVY--TSLDPSPDEK 344 (953)
Q Consensus 270 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~l~~~~~-~g~~~~l~~~--~~~--~~~~~SpDG~ 344 (953)
....|+.+|+ +++.+.|..- ... .......|+.
T Consensus 100 ------------------------------------------~~~~l~~vdL~T~e~~~vy~~p~~~~g~gt~v~n~d~t 137 (386)
T PF14583_consen 100 ------------------------------------------NGRSLRRVDLDTLEERVVYEVPDDWKGYGTWVANSDCT 137 (386)
T ss_dssp ------------------------------------------TTTEEEEEETTT--EEEEEE--TTEEEEEEEEE-TTSS
T ss_pred ------------------------------------------CCCeEEEEECCcCcEEEEEECCcccccccceeeCCCcc
Confidence 1247899999 8877666543 222 2333456899
Q ss_pred EEEEEEecCCccccc---------cCCCCCcceEEEeccCceEEEeccCCCcccCCccccccccCccceeeccCCCCceE
Q 002209 345 YILISSIHRPYSFIV---------PCGRFPRQVGVWTTDGIFVRELCDLPLAEDIPIAFNSVRKGMRSINWRSDKPSTLY 415 (953)
Q Consensus 345 ~l~~~~~~~~~~~~~---------~~~~~~~~i~~~d~~g~~~~~l~~~~~~~~~p~~~~~~~~~~~~~~wspDg~~i~~ 415 (953)
.++........-... ...+-...|+.+|+.+++.+.+..... ...-+.|||....++-
T Consensus 138 ~~~g~e~~~~d~~~l~~~~~f~e~~~a~p~~~i~~idl~tG~~~~v~~~~~-------------wlgH~~fsP~dp~li~ 204 (386)
T PF14583_consen 138 KLVGIEISREDWKPLTKWKGFREFYEARPHCRIFTIDLKTGERKVVFEDTD-------------WLGHVQFSPTDPTLIM 204 (386)
T ss_dssp EEEEEEEEGGG-----SHHHHHHHHHC---EEEEEEETTT--EEEEEEESS--------------EEEEEEETTEEEEEE
T ss_pred EEEEEEEeehhccCccccHHHHHHHhhCCCceEEEEECCCCceeEEEecCc-------------cccCcccCCCCCCEEE
Confidence 888776543211000 123345578899999988887765331 1134678877665554
Q ss_pred EEEeccCCCcccccccCCeEEEEecCCCCCCCceEEeecc--cccCCeeeccCCceEEEEEec-ccCceEEEEEcCCCCC
Q 002209 416 WAETQDGGDAKVEVTPRDIIYTQQAEPVQGEGPEILHKLD--LRYGGISWCDDSLALVYESWY-KTRRTRTWVISPGSKD 492 (953)
Q Consensus 416 ~~~~~~~~~~~~~~~~~~~l~~~d~~~~~g~~~~~l~~~~--~~~~~~~~SpDg~~l~~~~~~-~~~~~~l~~~d~~~~~ 492 (953)
+..+.... .-..+||+++. +|+..+.+.... ..+..--|+|||..|+|.... ++...-|..++++++
T Consensus 205 fCHEGpw~------~Vd~RiW~i~~---dg~~~~~v~~~~~~e~~gHEfw~~DG~~i~y~~~~~~~~~~~i~~~d~~t~- 274 (386)
T PF14583_consen 205 FCHEGPWD------LVDQRIWTINT---DGSNVKKVHRRMEGESVGHEFWVPDGSTIWYDSYTPGGQDFWIAGYDPDTG- 274 (386)
T ss_dssp EEE-S-TT------TSS-SEEEEET---TS---EESS---TTEEEEEEEE-TTSS-EEEEEEETTT--EEEEEE-TTT--
T ss_pred EeccCCcc------eeceEEEEEEc---CCCcceeeecCCCCcccccccccCCCCEEEEEeecCCCCceEEEeeCCCCC-
Confidence 43332221 11347999995 777777664332 122335799999999997653 333346788888885
Q ss_pred CCcEEeecCCCccccCCCCCCCeEeccCCCEEEEEeeeccCCCcEEEEecCCCCCCCCCCeEEEEECCCCceEEEeccCc
Q 002209 493 VAPRILFDRSSEDVYSDPGSPMMRRTSTGTYVIAKIKKENDEGTYILLNGNGATPEGNIPFLDLFDINTGSKERIWESDK 572 (953)
Q Consensus 493 ~~~~~~~~~~~~~~~~~~~~p~~~~SpDG~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~d~~~~~~~~l~~~~~ 572 (953)
+.+.+...+... .+.-|+||+.++=-..+. -+.+...+.-.-.+.+.||++++.++..+.|.....
T Consensus 275 -~~~~~~~~p~~~--------H~~ss~Dg~L~vGDG~d~-----p~~v~~~~~~~~~~~p~i~~~~~~~~~~~~l~~h~~ 340 (386)
T PF14583_consen 275 -ERRRLMEMPWCS--------HFMSSPDGKLFVGDGGDA-----PVDVADAGGYKIENDPWIYLFDVEAGRFRKLARHDT 340 (386)
T ss_dssp --EEEEEEE-SEE--------EEEE-TTSSEEEEEE------------------------EEEEEETTTTEEEEEEE---
T ss_pred -CceEEEeCCcee--------eeEEcCCCCEEEecCCCC-----CccccccccceecCCcEEEEeccccCceeeeeeccC
Confidence 334443332211 145689999776543211 111111111111246789999999999888877652
Q ss_pred ccceeeeEeecc-----CCccccccccCCEEEEEEecCCCCceEEEEECC
Q 002209 573 EKYYETTVALMS-----DQTEGDLYLNQLKILTSKESKTENTQYYIQSWP 617 (953)
Q Consensus 573 ~~~~~~~~~~~~-----~~~~~~~s~dg~~l~~~~~~~~~p~~l~~~~~~ 617 (953)
. ..++. ....++|||||+.++|+..- ..++.||.++++
T Consensus 341 s------w~v~~~~~q~~hPhp~FSPDgk~VlF~Sd~-~G~~~vY~v~i~ 383 (386)
T PF14583_consen 341 S------WKVLDGDRQVTHPHPSFSPDGKWVLFRSDM-EGPPAVYLVEIP 383 (386)
T ss_dssp ----------BTTBSSTT----EE-TTSSEEEEEE-T-TSS-EEEEEE--
T ss_pred c------ceeecCCCccCCCCCccCCCCCEEEEECCC-CCCccEEEEeCc
Confidence 1 11111 12348999999999988766 457889998864
No 59
>PRK11460 putative hydrolase; Provisional
Probab=99.64 E-value=1.6e-14 Score=148.91 Aligned_cols=130 Identities=22% Similarity=0.148 Sum_probs=104.1
Q ss_pred HHHHHHHHHHHHHHHcCCCCCCcEEEEEeChHHHHHHHHHHhCCCcccEEEEcccCCCCCCCCcCcccccchhhhhHHHH
Q 002209 738 QLVACAEAAVEEVVRRGVAHPSKIAVGGHSYGAFMTANLLAHAPHLFCCGIARSGAYNRTLTPFGFQNEDRTLWEATSTY 817 (953)
Q Consensus 738 ~~~~D~~~~~~~l~~~~~~d~~~i~l~G~S~GG~~a~~~a~~~p~~~~a~v~~~~~~d~~~~~~~~~~~~~~~~~~~~~~ 817 (953)
.....+.+.++++.++..+++++|+++|+|+||.+++.++.++|+.+.++++.++.+.. ..
T Consensus 82 ~~~~~l~~~i~~~~~~~~~~~~~i~l~GfS~Gg~~al~~a~~~~~~~~~vv~~sg~~~~------~~------------- 142 (232)
T PRK11460 82 AIMPTFIETVRYWQQQSGVGASATALIGFSQGAIMALEAVKAEPGLAGRVIAFSGRYAS------LP------------- 142 (232)
T ss_pred HHHHHHHHHHHHHHHhcCCChhhEEEEEECHHHHHHHHHHHhCCCcceEEEEecccccc------cc-------------
Confidence 33455666777777777788899999999999999999999998888888877763210 00
Q ss_pred HhcCcccccCCCCCcEEEEEeCCCCCCCCchHHHHHHHHHHHhCCCcEEEEEeCCCCccCCCcccHHHHHHHHHHHHHHh
Q 002209 818 VEMSPFMSANKLKKPILLVHGEEDNNSGTLTMQSDRFFNALKGHGALCRLVILPFESHGYAARESIMHVLWETDRWLQKY 897 (953)
Q Consensus 818 ~~~sp~~~~~~i~~P~Li~~G~~D~~v~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~H~~~~~~~~~~~~~~i~~fl~~~ 897 (953)
.....++|+|++||++|.+|| ++.+.++++.|++.+.+++++.||+++|.+. .+..+.+.+||.+.
T Consensus 143 -------~~~~~~~pvli~hG~~D~vvp--~~~~~~~~~~L~~~g~~~~~~~~~~~gH~i~-----~~~~~~~~~~l~~~ 208 (232)
T PRK11460 143 -------ETAPTATTIHLIHGGEDPVID--VAHAVAAQEALISLGGDVTLDIVEDLGHAID-----PRLMQFALDRLRYT 208 (232)
T ss_pred -------ccccCCCcEEEEecCCCCccC--HHHHHHHHHHHHHCCCCeEEEEECCCCCCCC-----HHHHHHHHHHHHHH
Confidence 001246899999999999999 9999999999999999999999999999985 35567778888887
Q ss_pred ccC
Q 002209 898 CVS 900 (953)
Q Consensus 898 l~~ 900 (953)
+..
T Consensus 209 l~~ 211 (232)
T PRK11460 209 VPK 211 (232)
T ss_pred cch
Confidence 743
No 60
>COG4099 Predicted peptidase [General function prediction only]
Probab=99.64 E-value=1.1e-15 Score=149.97 Aligned_cols=208 Identities=20% Similarity=0.250 Sum_probs=137.7
Q ss_pred cCCCcEEEEEEEcCCCCCCCCCCCccEEEEeCCCCCcCcCCCCcccCCCCCCCCccchHHHHHH--HcCcEEEEcCCCCC
Q 002209 646 RKDGVQLSATLYLPPGYDPSKDGPLPCLFWSYPGEFKSKDAAGQVRGSPNEFPRIGSTSVLLWL--ARGFAILGGPTTPI 723 (953)
Q Consensus 646 ~~dg~~~~~~l~~P~~~~~~~~~~~P~vv~~hGg~~~~~~~~~~~~~~~~~~~~~~~~~~~~la--~~G~~V~~~~~~~~ 723 (953)
...|.++...+|.|+++.++++. +|+|||+||+...+.+...++..+. -+..|+ +-+|-|++|.+-..
T Consensus 168 ~~tgneLkYrly~Pkdy~pdkky-~PLvlfLHgagq~g~dn~~~l~sg~---------gaiawa~pedqcfVlAPQy~~i 237 (387)
T COG4099 168 ESTGNELKYRLYTPKDYAPDKKY-YPLVLFLHGAGQGGSDNDKVLSSGI---------GAIAWAGPEDQCFVLAPQYNPI 237 (387)
T ss_pred cccCceeeEEEecccccCCCCcc-ccEEEEEecCCCCCchhhhhhhcCc---------cceeeecccCceEEEccccccc
Confidence 34678999999999999998862 3999999997655443332222211 111222 23567777664221
Q ss_pred CCCCChhhhhhhHHHHHHHHHHHHH-HHHHcCCCCCCcEEEEEeChHHHHHHHHHHhCCCcccEEEEcccCCCCCCCCcC
Q 002209 724 IGEGDEEANDRFVEQLVACAEAAVE-EVVRRGVAHPSKIAVGGHSYGAFMTANLLAHAPHLFCCGIARSGAYNRTLTPFG 802 (953)
Q Consensus 724 ~G~G~~~~~~~~~~~~~~D~~~~~~-~l~~~~~~d~~~i~l~G~S~GG~~a~~~a~~~p~~~~a~v~~~~~~d~~~~~~~ 802 (953)
.--.++ +. .....-.++.++ -|.+++.||..||.++|.|+||++++.++.++|+.|+|+++++|--|.
T Consensus 238 f~d~e~----~t-~~~l~~~idli~~vlas~ynID~sRIYviGlSrG~~gt~al~~kfPdfFAaa~~iaG~~d~------ 306 (387)
T COG4099 238 FADSEE----KT-LLYLIEKIDLILEVLASTYNIDRSRIYVIGLSRGGFGTWALAEKFPDFFAAAVPIAGGGDR------ 306 (387)
T ss_pred cccccc----cc-chhHHHHHHHHHHHHhhccCcccceEEEEeecCcchhhHHHHHhCchhhheeeeecCCCch------
Confidence 111111 11 111222233444 677789999999999999999999999999999999999999985331
Q ss_pred cccccchhhhhHHHHHhcCcccccCCC-CCcEEEEEeCCCCCCCCchHHHHHHHHHHHhCCCcEEEEEeCC---CCccCC
Q 002209 803 FQNEDRTLWEATSTYVEMSPFMSANKL-KKPILLVHGEEDNNSGTLTMQSDRFFNALKGHGALCRLVILPF---ESHGYA 878 (953)
Q Consensus 803 ~~~~~~~~~~~~~~~~~~sp~~~~~~i-~~P~Li~~G~~D~~v~~~~~~~~~~~~~l~~~g~~~~~~~~~~---~~H~~~ 878 (953)
...++.+ +.|+.++|+.+|.++| .++++-+|+.++..+.++++..|.. ..|++.
T Consensus 307 --------------------v~lv~~lk~~piWvfhs~dDkv~P--v~nSrv~y~~lk~~~~kv~Ytaf~~g~~~~eG~d 364 (387)
T COG4099 307 --------------------VYLVRTLKKAPIWVFHSSDDKVIP--VSNSRVLYERLKALDRKVNYTAFLEGTTVLEGVD 364 (387)
T ss_pred --------------------hhhhhhhccCceEEEEecCCCccc--cCcceeehHHHHhhccccchhhhhhccccccccC
Confidence 0111122 5799999999999999 9999999999999988888877762 234332
Q ss_pred CcccH--HHHHHHHHHHHHH
Q 002209 879 ARESI--MHVLWETDRWLQK 896 (953)
Q Consensus 879 ~~~~~--~~~~~~i~~fl~~ 896 (953)
....+ ..-..++.+||-+
T Consensus 365 ~~g~w~atyn~~eaieWLl~ 384 (387)
T COG4099 365 HSGVWWATYNDAEAIEWLLK 384 (387)
T ss_pred CCCcceeecCCHHHHHHHHh
Confidence 21111 1223456788754
No 61
>PF14583 Pectate_lyase22: Oligogalacturonate lyase; PDB: 3C5M_C 3PE7_A.
Probab=99.64 E-value=1.2e-13 Score=145.49 Aligned_cols=312 Identities=16% Similarity=0.153 Sum_probs=157.7
Q ss_pred CCCceecCCCCEEEEEecCCCCCccccccccceeceEEecCCCCCCcceeeeeceEEEEccCCCCCCceeeeecCCCCCc
Q 002209 111 LPALSFSPQRDKILFLKRRALPPLEELARPEEKLAGLRIDGKCNTRSRMSFYTGIGIHQLFPDGKLGQEIEIQGFPDGAK 190 (953)
Q Consensus 111 ~~~~~~SPDG~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~i~~~~~~g~~~~~~~l~~~~~~~~ 190 (953)
.....|.+||++|+|.+.. ++.. ++|+.|+.+ ++.++||..+. ..
T Consensus 38 F~~~~ft~dG~kllF~s~~------------------------dg~~------nly~lDL~t----~~i~QLTdg~g-~~ 82 (386)
T PF14583_consen 38 FYQNCFTDDGRKLLFASDF------------------------DGNR------NLYLLDLAT----GEITQLTDGPG-DN 82 (386)
T ss_dssp TTS--B-TTS-EEEEEE-T------------------------TSS-------EEEEEETTT-----EEEE---SS--B-
T ss_pred ecCCCcCCCCCEEEEEecc------------------------CCCc------ceEEEEccc----CEEEECccCCC-CC
Confidence 4467899999999998873 2333 889999965 77778775432 23
Q ss_pred ccceEeccCCCeEEEEEeeccccCCCCcceEEEEECCCCceeecccCCCccccccccceEEe--cCCeEEEEEecCCCCC
Q 002209 191 LNFVTWSQDGKHLAFSIRIDAEDSSSSKLRVWVADVDTGKARPLFQSPDIYLNAIFDNFVWV--NNSTLLVCTIPLLRGD 268 (953)
Q Consensus 191 ~~~~~wSPDG~~laf~~~~~~~~~~~~~~~l~~~d~~~g~~~~lt~~~~~~~~~~~~~~~ws--pDg~~l~~~~~~~~~~ 268 (953)
.....+||+++.|+|... ..+|+.+|+++++.+.|...+... .....|+ .|++.++.........
T Consensus 83 ~~g~~~s~~~~~~~Yv~~---------~~~l~~vdL~T~e~~~vy~~p~~~----~g~gt~v~n~d~t~~~g~e~~~~d~ 149 (386)
T PF14583_consen 83 TFGGFLSPDDRALYYVKN---------GRSLRRVDLDTLEERVVYEVPDDW----KGYGTWVANSDCTKLVGIEISREDW 149 (386)
T ss_dssp TTT-EE-TTSSEEEEEET---------TTEEEEEETTT--EEEEEE--TTE----EEEEEEEE-TTSSEEEEEEEEGGG-
T ss_pred ccceEEecCCCeEEEEEC---------CCeEEEEECCcCcEEEEEECCccc----ccccceeeCCCccEEEEEEEeehhc
Confidence 456889999999999763 458999999999999998877753 3356675 5677776551110000
Q ss_pred CCCCCCCCCCCceeecCCCccccchhhhhhcCCcchhhhhhhhccceEEEEEc-CCceeEeCCC-CcccccccCC-CCcE
Q 002209 269 PPKKPLVPLGPKMQSNEKRDIIQVRTFQDLLKDEYDEDLFDYYATTQLVLVSL-DGTVKEIGPP-AVYTSLDPSP-DEKY 345 (953)
Q Consensus 269 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~l~~~~~-~g~~~~l~~~-~~~~~~~~Sp-DG~~ 345 (953)
.. +-....-.+.+.-.....|+.+|+ +|+.+.+... .....+.+|| |...
T Consensus 150 ------------------~~---------l~~~~~f~e~~~a~p~~~i~~idl~tG~~~~v~~~~~wlgH~~fsP~dp~l 202 (386)
T PF14583_consen 150 ------------------KP---------LTKWKGFREFYEARPHCRIFTIDLKTGERKVVFEDTDWLGHVQFSPTDPTL 202 (386)
T ss_dssp -------------------------------SHHHHHHHHHC---EEEEEEETTT--EEEEEEESS-EEEEEEETTEEEE
T ss_pred ------------------cC---------ccccHHHHHHHhhCCCceEEEEECCCCceeEEEecCccccCcccCCCCCCE
Confidence 00 000000111111114478999999 9988887765 6667888998 6666
Q ss_pred EEEEEecCCccccccCCCCCcceEEEeccCceEEEeccCCCcccCCccccccccCccceeeccCCCCceEEEEeccCCCc
Q 002209 346 ILISSIHRPYSFIVPCGRFPRQVGVWTTDGIFVRELCDLPLAEDIPIAFNSVRKGMRSINWRSDKPSTLYWAETQDGGDA 425 (953)
Q Consensus 346 l~~~~~~~~~~~~~~~~~~~~~i~~~d~~g~~~~~l~~~~~~~~~p~~~~~~~~~~~~~~wspDg~~i~~~~~~~~~~~~ 425 (953)
|+|-- .+|. ......||+++.+|+..+.+......+ ...---|+|||+.|.|......+
T Consensus 203 i~fCH-EGpw------~~Vd~RiW~i~~dg~~~~~v~~~~~~e-----------~~gHEfw~~DG~~i~y~~~~~~~--- 261 (386)
T PF14583_consen 203 IMFCH-EGPW------DLVDQRIWTINTDGSNVKKVHRRMEGE-----------SVGHEFWVPDGSTIWYDSYTPGG--- 261 (386)
T ss_dssp EEEEE--S-T------TTSS-SEEEEETTS---EESS---TTE-----------EEEEEEE-TTSS-EEEEEEETTT---
T ss_pred EEEec-cCCc------ceeceEEEEEEcCCCcceeeecCCCCc-----------ccccccccCCCCEEEEEeecCCC---
Confidence 66654 3322 223457999999999988887543211 11234599999999987332211
Q ss_pred ccccccCCeEEEEecCCCCCCCceEEeecccccCCeeeccCCceEEEEEeccc------------CceEEEEEcCCCCCC
Q 002209 426 KVEVTPRDIIYTQQAEPVQGEGPEILHKLDLRYGGISWCDDSLALVYESWYKT------------RRTRTWVISPGSKDV 493 (953)
Q Consensus 426 ~~~~~~~~~l~~~d~~~~~g~~~~~l~~~~~~~~~~~~SpDg~~l~~~~~~~~------------~~~~l~~~d~~~~~~ 493 (953)
...-|..++. ..++.+.+...+. ..-+--|+||+.++=-..+.. ...-||++++..+
T Consensus 262 -----~~~~i~~~d~---~t~~~~~~~~~p~-~~H~~ss~Dg~L~vGDG~d~p~~v~~~~~~~~~~~p~i~~~~~~~~-- 330 (386)
T PF14583_consen 262 -----QDFWIAGYDP---DTGERRRLMEMPW-CSHFMSSPDGKLFVGDGGDAPVDVADAGGYKIENDPWIYLFDVEAG-- 330 (386)
T ss_dssp -------EEEEEE-T---TT--EEEEEEE-S-EEEEEE-TTSSEEEEEE-------------------EEEEEETTTT--
T ss_pred -----CceEEEeeCC---CCCCceEEEeCCc-eeeeEEcCCCCEEEecCCCCCccccccccceecCCcEEEEeccccC--
Confidence 1223555664 4445555544443 334556789986654332111 1124777887764
Q ss_pred CcEEeecCCCcc-c-c--CCCCCCCeEeccCCCEEEEEee
Q 002209 494 APRILFDRSSED-V-Y--SDPGSPMMRRTSTGTYVIAKIK 529 (953)
Q Consensus 494 ~~~~~~~~~~~~-~-~--~~~~~p~~~~SpDG~~l~~~~~ 529 (953)
....+....... + . .....|.++|||||++|+|.+.
T Consensus 331 ~~~~l~~h~~sw~v~~~~~q~~hPhp~FSPDgk~VlF~Sd 370 (386)
T PF14583_consen 331 RFRKLARHDTSWKVLDGDRQVTHPHPSFSPDGKWVLFRSD 370 (386)
T ss_dssp EEEEEEE-------BTTBSSTT----EE-TTSSEEEEEE-
T ss_pred ceeeeeeccCcceeecCCCccCCCCCccCCCCCEEEEECC
Confidence 333332221111 0 0 1124577899999999999984
No 62
>TIGR01840 esterase_phb esterase, PHB depolymerase family. This model describes a subfamily among lipases of the ab-hydrolase family. This subfamily includes bacterial depolymerases for poly(3-hydroxybutyrate) (PHB) and related polyhydroxyalkanoates (PHA), as well as acetyl xylan esterases, feruloyl esterases, and others from fungi.
Probab=99.62 E-value=5.3e-15 Score=151.04 Aligned_cols=188 Identities=17% Similarity=0.108 Sum_probs=117.8
Q ss_pred EEEEcCCCCCCCCCCCccEEEEeCCCCCcCcCCCCcccCCCCCCCCccchHHHHHHHcCcEEEEcCCCCCCCCCChh--h
Q 002209 654 ATLYLPPGYDPSKDGPLPCLFWSYPGEFKSKDAAGQVRGSPNEFPRIGSTSVLLWLARGFAILGGPTTPIIGEGDEE--A 731 (953)
Q Consensus 654 ~~l~~P~~~~~~~~~~~P~vv~~hGg~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~G~~V~~~~~~~~~G~G~~~--~ 731 (953)
+++|+|++. .+++|+||++||+..... .+.. ...+...+.+.||+|+.+++++..+.+..+ .
T Consensus 1 ~~ly~P~~~----~~~~P~vv~lHG~~~~~~-----------~~~~-~~~~~~~a~~~g~~Vv~Pd~~g~~~~~~~~~~~ 64 (212)
T TIGR01840 1 MYVYVPAGL----TGPRALVLALHGCGQTAS-----------AYVI-DWGWKAAADRYGFVLVAPEQTSYNSSNNCWDWF 64 (212)
T ss_pred CEEEcCCCC----CCCCCEEEEeCCCCCCHH-----------HHhh-hcChHHHHHhCCeEEEecCCcCccccCCCCCCC
Confidence 478999874 235899999999743211 0100 011233445689999998876543221110 0
Q ss_pred h---hhhHHHHHHHHHHHHHHHHHcCCCCCCcEEEEEeChHHHHHHHHHHhCCCcccEEEEcccCCCCCCCCc-C-ccc-
Q 002209 732 N---DRFVEQLVACAEAAVEEVVRRGVAHPSKIAVGGHSYGAFMTANLLAHAPHLFCCGIARSGAYNRTLTPF-G-FQN- 805 (953)
Q Consensus 732 ~---~~~~~~~~~D~~~~~~~l~~~~~~d~~~i~l~G~S~GG~~a~~~a~~~p~~~~a~v~~~~~~d~~~~~~-~-~~~- 805 (953)
. .........|+..+++++.++..+|++||+|+|+|+||++++.++.++|++|++++++++..-...... . +..
T Consensus 65 ~~~~~~~~~~~~~~~~~~i~~~~~~~~id~~~i~l~G~S~Gg~~a~~~a~~~p~~~~~~~~~~g~~~~~~~~~~~~~~~~ 144 (212)
T TIGR01840 65 FTHHRARGTGEVESLHQLIDAVKANYSIDPNRVYVTGLSAGGGMTAVLGCTYPDVFAGGASNAGLPYGEASSSISATPQM 144 (212)
T ss_pred CccccCCCCccHHHHHHHHHHHHHhcCcChhheEEEEECHHHHHHHHHHHhCchhheEEEeecCCcccccccchhhHhhc
Confidence 0 011234577888999999888889999999999999999999999999999999998887532111000 0 000
Q ss_pred -ccchhhhhHHHHHhcCcccccCCCCCcEEEEEeCCCCCCCCchHHHHHHHHHHHhC
Q 002209 806 -EDRTLWEATSTYVEMSPFMSANKLKKPILLVHGEEDNNSGTLTMQSDRFFNALKGH 861 (953)
Q Consensus 806 -~~~~~~~~~~~~~~~sp~~~~~~i~~P~Li~~G~~D~~v~~~~~~~~~~~~~l~~~ 861 (953)
......+..+...... ........|++|+||++|.+|| +..++++++++++.
T Consensus 145 ~~~~~~~~~~~~~~~~~--~~~~~~~p~~~i~hG~~D~vVp--~~~~~~~~~~l~~~ 197 (212)
T TIGR01840 145 CTAATAASVCRLVRGMQ--SEYNGPTPIMSVVHGDADYTVL--PGNADEIRDAMLKV 197 (212)
T ss_pred CCCCCHHHHHHHHhccC--CcccCCCCeEEEEEcCCCceeC--cchHHHHHHHHHHh
Confidence 0000000011111111 1112234557899999999999 99999999999875
No 63
>TIGR00976 /NonD putative hydrolase, CocE/NonD family. This model represents a protein subfamily that includes the cocaine esterase CocE, several glutaryl-7-ACA acylases, and the putative diester hydrolase NonD of Streptomyces griseus (all hydrolases). This family shows extensive, low-level similarity to a family of xaa-pro dipeptidyl-peptidases, and local similarity by PSI-BLAST to many other hydrolases.
Probab=99.61 E-value=1.8e-14 Score=168.62 Aligned_cols=232 Identities=22% Similarity=0.279 Sum_probs=150.2
Q ss_pred EcCCCcEEEEEEEcCCCCCCCCCCCccEEEEeCCCCCcCcCCCCcccCCCCCCCCccchHHHHHHHcCcEEEEcCCCCCC
Q 002209 645 QRKDGVQLSATLYLPPGYDPSKDGPLPCLFWSYPGEFKSKDAAGQVRGSPNEFPRIGSTSVLLWLARGFAILGGPTTPII 724 (953)
Q Consensus 645 ~~~dg~~~~~~l~~P~~~~~~~~~~~P~vv~~hGg~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~G~~V~~~~~~~~~ 724 (953)
+..||.+|.+.+|+|++ .++.|+||++||...... + . ..........|+++||+|+.+|. +
T Consensus 2 ~~~DG~~L~~~~~~P~~-----~~~~P~Il~~~gyg~~~~----~-~------~~~~~~~~~~l~~~Gy~vv~~D~---R 62 (550)
T TIGR00976 2 PMRDGTRLAIDVYRPAG-----GGPVPVILSRTPYGKDAG----L-R------WGLDKTEPAWFVAQGYAVVIQDT---R 62 (550)
T ss_pred cCCCCCEEEEEEEecCC-----CCCCCEEEEecCCCCchh----h-c------cccccccHHHHHhCCcEEEEEec---c
Confidence 46799999999999975 235999999998421100 0 0 00111234578999999999544 6
Q ss_pred CCCChhhhhhhH-HHHHHHHHHHHHHHHHcCCCCCCcEEEEEeChHHHHHHHHHHhCCCcccEEEEcccCCCCCCC---C
Q 002209 725 GEGDEEANDRFV-EQLVACAEAAVEEVVRRGVAHPSKIAVGGHSYGAFMTANLLAHAPHLFCCGIARSGAYNRTLT---P 800 (953)
Q Consensus 725 G~G~~~~~~~~~-~~~~~D~~~~~~~l~~~~~~d~~~i~l~G~S~GG~~a~~~a~~~p~~~~a~v~~~~~~d~~~~---~ 800 (953)
|+|.+.+..... ....+|+.++++|+.++++.+ .+|+++|+||||.+++.++..+|+.++|+|+.+++.+.... .
T Consensus 63 G~g~S~g~~~~~~~~~~~D~~~~i~~l~~q~~~~-~~v~~~G~S~GG~~a~~~a~~~~~~l~aiv~~~~~~d~~~~~~~~ 141 (550)
T TIGR00976 63 GRGASEGEFDLLGSDEAADGYDLVDWIAKQPWCD-GNVGMLGVSYLAVTQLLAAVLQPPALRAIAPQEGVWDLYRDIAFP 141 (550)
T ss_pred ccccCCCceEecCcccchHHHHHHHHHHhCCCCC-CcEEEEEeChHHHHHHHHhccCCCceeEEeecCcccchhHhhccC
Confidence 777775543223 578999999999999998776 69999999999999999999998999999998887663210 0
Q ss_pred cCccc-------------ccc--------------hhhh---hHHH-------------------------------HHh
Q 002209 801 FGFQN-------------EDR--------------TLWE---ATST-------------------------------YVE 819 (953)
Q Consensus 801 ~~~~~-------------~~~--------------~~~~---~~~~-------------------------------~~~ 819 (953)
-.+.. ... ..+. .... +..
T Consensus 142 g~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~ 221 (550)
T TIGR00976 142 GALRLDVLLGWWALLATDSMRPRADDRPPRYAAAARLAQSYDDCQTALSHTPRSSVLALDRFIGWWIQVVDDDYDESWVS 221 (550)
T ss_pred CeeccchhHHHHHhhccccccccccccccchHHHHHHhhhhhhHHHHHhcCCccccccccccchhhhhccCCCCChhhcc
Confidence 00000 000 0000 0000 001
Q ss_pred cCcccccCCCCCcEEEEEeCCCCCCCCchHHHHHHHHHHHhCCCcEEEEEeCCCCccCCCc-------c-cHHHHHH--H
Q 002209 820 MSPFMSANKLKKPILLVHGEEDNNSGTLTMQSDRFFNALKGHGALCRLVILPFESHGYAAR-------E-SIMHVLW--E 889 (953)
Q Consensus 820 ~sp~~~~~~i~~P~Li~~G~~D~~v~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~H~~~~~-------~-~~~~~~~--~ 889 (953)
.+....++++++|+|++.|-.|.. ...+.+.|+.+...+ +.++++=|. .|..... . ....... .
T Consensus 222 ~~~~~~~~~i~vP~l~~~gw~D~~----~~g~~~~~~~~~~~~-~~~lilGpw-~H~~~~~~~~~~~~g~~~~~~~~~~~ 295 (550)
T TIGR00976 222 ISLWRDLGGSDVPTLVTGGWYDNH----SRGSIRLFLAVHRGG-AQRLVVGPW-THSGLGGRVGDGNYGMAALSWVDEAE 295 (550)
T ss_pred CchhhHhcCCCCCEEEeCcccCCC----CchHHHHHHHHhhcC-CceEEEccC-CCCCcccccCCCccCccccccchhhh
Confidence 122234567899999999999943 567778888887654 567776564 6752100 0 0011112 4
Q ss_pred HHHHHHHhccCCC
Q 002209 890 TDRWLQKYCVSNT 902 (953)
Q Consensus 890 i~~fl~~~l~~~~ 902 (953)
+++||++||+...
T Consensus 296 ~~~wfD~~Lkg~~ 308 (550)
T TIGR00976 296 QLAFFDRHLKGGT 308 (550)
T ss_pred hHHHHHHHhCCCC
Confidence 6899999998643
No 64
>PF12715 Abhydrolase_7: Abhydrolase family; PDB: 3NUZ_C 3G8Y_A.
Probab=99.61 E-value=2.4e-15 Score=157.24 Aligned_cols=215 Identities=19% Similarity=0.275 Sum_probs=118.6
Q ss_pred CcCCCceEEEEEEcCCCcEEEEEEEcCCCCCCCCCCCccEEEEeCCCCCcCcCCCCcccCCC-------CCCCCccchHH
Q 002209 633 QLASLQKELIKYQRKDGVQLSATLYLPPGYDPSKDGPLPCLFWSYPGEFKSKDAAGQVRGSP-------NEFPRIGSTSV 705 (953)
Q Consensus 633 ~~~~~~~~~~~~~~~dg~~~~~~l~~P~~~~~~~~~~~P~vv~~hGg~~~~~~~~~~~~~~~-------~~~~~~~~~~~ 705 (953)
+.+.+..|++.|...++..+++++++|++. ++|.|.||++||.... ++ .+.+.+ ...........
T Consensus 82 qrdGY~~EKv~f~~~p~~~vpaylLvPd~~----~~p~PAVL~lHgHg~~-Ke---~~~g~~gv~~~~~~~~~~~~~~~g 153 (390)
T PF12715_consen 82 QRDGYTREKVEFNTTPGSRVPAYLLVPDGA----KGPFPAVLCLHGHGGG-KE---KMAGEDGVSPDLKDDYDDPKQDYG 153 (390)
T ss_dssp EETTEEEEEEEE--STTB-EEEEEEEETT------S-EEEEEEE--TT---HH---HHCT---SSGCG--STTSTTT-HH
T ss_pred ecCCeEEEEEEEEccCCeeEEEEEEecCCC----CCCCCEEEEeCCCCCC-cc---cccCCcccccccchhhccccccHH
Confidence 355678899999999999999999999874 4679999999995221 10 111110 11111223457
Q ss_pred HHHHHcCcEEEEcCCCCCCCCCChhh----------------------hhhhHHHHHHHHHHHHHHHHHcCCCCCCcEEE
Q 002209 706 LLWLARGFAILGGPTTPIIGEGDEEA----------------------NDRFVEQLVACAEAAVEEVVRRGVAHPSKIAV 763 (953)
Q Consensus 706 ~~la~~G~~V~~~~~~~~~G~G~~~~----------------------~~~~~~~~~~D~~~~~~~l~~~~~~d~~~i~l 763 (953)
..|+++||+|+++|.. |+|+... +..+......|.+.+++||.+++.+|++||++
T Consensus 154 ~~LAk~GYVvla~D~~---g~GER~~~e~~~~~~~~~~~~la~~~l~lG~S~~G~~~~ddmr~lDfL~slpeVD~~RIG~ 230 (390)
T PF12715_consen 154 DQLAKRGYVVLAPDAL---GFGERGDMEGAAQGSNYDCQALARNLLMLGRSLAGLMAWDDMRALDFLASLPEVDPDRIGC 230 (390)
T ss_dssp HHHHTTTSEEEEE--T---TSGGG-SSCCCTTTTS--HHHHHHHHHHTT--HHHHHHHHHHHHHHHHCT-TTEEEEEEEE
T ss_pred HHHHhCCCEEEEEccc---cccccccccccccccchhHHHHHHHHHHcCcCHHHHHHHHHHHHHHHHhcCcccCccceEE
Confidence 7899999999996654 4433310 01223345677888999999999999999999
Q ss_pred EEeChHHHHHHHHHHhCCCcccEEEEcccCCCCC-----CC-C-----cCcccc----cchhh---hhHHHHHhcCcccc
Q 002209 764 GGHSYGAFMTANLLAHAPHLFCCGIARSGAYNRT-----LT-P-----FGFQNE----DRTLW---EATSTYVEMSPFMS 825 (953)
Q Consensus 764 ~G~S~GG~~a~~~a~~~p~~~~a~v~~~~~~d~~-----~~-~-----~~~~~~----~~~~~---~~~~~~~~~sp~~~ 825 (953)
+|+||||+.++++++.+ ++++|+|+.+-+.... ++ + .++... ...+| +.++...-.
T Consensus 231 ~GfSmGg~~a~~LaALD-dRIka~v~~~~l~~~~~~~~~mt~~~~~~~~~~~~~~~~~iPgl~r~~D~PdIasli----- 304 (390)
T PF12715_consen 231 MGFSMGGYRAWWLAALD-DRIKATVANGYLCTTQERALLMTMPNNNGLRGFPNCICNYIPGLWRYFDFPDIASLI----- 304 (390)
T ss_dssp EEEGGGHHHHHHHHHH--TT--EEEEES-B--HHHHHHHB----TTS----SS-GGG--TTCCCC--HHHHHHTT-----
T ss_pred EeecccHHHHHHHHHcc-hhhHhHhhhhhhhccchhhHhhccccccccCcCcchhhhhCccHHhhCccHHHHHHh-----
Confidence 99999999999999999 7899888765432110 00 0 000000 00111 111111111
Q ss_pred cCCCCCcEEEEEeCCCCCCCCchHHHHHHHHHHHhCCCcEEEEEeCC
Q 002209 826 ANKLKKPILLVHGEEDNNSGTLTMQSDRFFNALKGHGALCRLVILPF 872 (953)
Q Consensus 826 ~~~i~~P~Li~~G~~D~~v~~~~~~~~~~~~~l~~~g~~~~~~~~~~ 872 (953)
...|+|++.|..|..+| . .++-|+.. .+...++++.||+
T Consensus 305 ---APRPll~~nG~~Dklf~--i--V~~AY~~~-~~p~n~~~~~~p~ 343 (390)
T PF12715_consen 305 ---APRPLLFENGGKDKLFP--I--VRRAYAIM-GAPDNFQIHHYPK 343 (390)
T ss_dssp ---TTS-EEESS-B-HHHHH--H--HHHHHHHT-T-GGGEEE---GG
T ss_pred ---CCCcchhhcCCcccccH--H--HHHHHHhc-CCCcceEEeeccc
Confidence 25899999999998865 3 34444443 3345688888886
No 65
>TIGR01607 PST-A Plasmodium subtelomeric family (PST-A). These genes are preferentially located in the subtelomeric regions of the chromosomes of both P. falciparum and P. yoelii.
Probab=99.59 E-value=5.9e-14 Score=153.27 Aligned_cols=235 Identities=15% Similarity=0.160 Sum_probs=147.5
Q ss_pred EEcCCCcEEEEEEEcCCCCCCCCCCCccEEEEeCCCCCcCcCCCCcccC-------------CCCCCCCccchHHHHHHH
Q 002209 644 YQRKDGVQLSATLYLPPGYDPSKDGPLPCLFWSYPGEFKSKDAAGQVRG-------------SPNEFPRIGSTSVLLWLA 710 (953)
Q Consensus 644 ~~~~dg~~~~~~l~~P~~~~~~~~~~~P~vv~~hGg~~~~~~~~~~~~~-------------~~~~~~~~~~~~~~~la~ 710 (953)
+.+.||..|..+.|.|+. +..+|+++||-...... .+++. .++++..+...++..|++
T Consensus 2 ~~~~~g~~l~~~~~~~~~-------~kg~v~i~HG~~eh~~~--~~~~~~~~~~~~~~~~~~~~~ry~~y~~~~~~~l~~ 72 (332)
T TIGR01607 2 FRNKDGLLLKTYSWIVKN-------AIGIIVLIHGLKSHLRL--QFLKINAKIVNNDRAVLIDTDNYYIYKDSWIENFNK 72 (332)
T ss_pred ccCCCCCeEEEeeeeccC-------CeEEEEEECCCchhhhh--hhhhcCcccCCCCeeEEEcCCcceEeeHHHHHHHHH
Confidence 456799999999998752 35799999993211110 00000 001111122346778999
Q ss_pred cCcEEEEcCCCCCCCCCChhhh---h---hhHHHHHHHHHHHHHHHHHc------------------CCCCCCcEEEEEe
Q 002209 711 RGFAILGGPTTPIIGEGDEEAN---D---RFVEQLVACAEAAVEEVVRR------------------GVAHPSKIAVGGH 766 (953)
Q Consensus 711 ~G~~V~~~~~~~~~G~G~~~~~---~---~~~~~~~~D~~~~~~~l~~~------------------~~~d~~~i~l~G~ 766 (953)
+||.|++ .|.+|+|.+... . ..+...++|+...++.+.+. .+-...+++|+||
T Consensus 73 ~G~~V~~---~D~rGHG~S~~~~~~~g~~~~~~~~v~Dl~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~l~Gh 149 (332)
T TIGR01607 73 NGYSVYG---LDLQGHGESDGLQNLRGHINCFDDLVYDVIQYMNRINDSIILENETKSDDESYDIVNTKENRLPMYIIGL 149 (332)
T ss_pred CCCcEEE---ecccccCCCccccccccchhhHHHHHHHHHHHHHHhhhhhccccccccccccccccccccCCCceeEeec
Confidence 9999999 556777776432 1 23567788999988887652 1111357999999
Q ss_pred ChHHHHHHHHHHhCCC--------cccEEEEcccCCCCCCC-----------------------C-cCcccccchhh--h
Q 002209 767 SYGAFMTANLLAHAPH--------LFCCGIARSGAYNRTLT-----------------------P-FGFQNEDRTLW--E 812 (953)
Q Consensus 767 S~GG~~a~~~a~~~p~--------~~~a~v~~~~~~d~~~~-----------------------~-~~~~~~~~~~~--~ 812 (953)
||||.+++.++...+. .++++|+.+|+...... + ..........+ .
T Consensus 150 SmGg~i~~~~~~~~~~~~~~~~~~~i~g~i~~s~~~~i~~~~~~~~~~~~~~~~~l~~~~~~~~p~~~~~~~~~~~~~~~ 229 (332)
T TIGR01607 150 SMGGNIALRLLELLGKSNENNDKLNIKGCISLSGMISIKSVGSDDSFKFKYFYLPVMNFMSRVFPTFRISKKIRYEKSPY 229 (332)
T ss_pred cCccHHHHHHHHHhccccccccccccceEEEeccceEEecccCCCcchhhhhHHHHHHHHHHHCCcccccCccccccChh
Confidence 9999999998865432 58888888876421100 0 00000000000 0
Q ss_pred hHHHHHhcCc----------------------ccccCCC--CCcEEEEEeCCCCCCCCchHHHHHHHHHHHhCCCcEEEE
Q 002209 813 ATSTYVEMSP----------------------FMSANKL--KKPILLVHGEEDNNSGTLTMQSDRFFNALKGHGALCRLV 868 (953)
Q Consensus 813 ~~~~~~~~sp----------------------~~~~~~i--~~P~Li~~G~~D~~v~~~~~~~~~~~~~l~~~g~~~~~~ 868 (953)
..+.+ ..+| ...+.++ +.|+|++||++|.+|+ +..++++++.+... +++++
T Consensus 230 ~~~~~-~~Dp~~~~~~~s~~~~~~l~~~~~~~~~~~~~i~~~~P~Lii~G~~D~vv~--~~~~~~~~~~~~~~--~~~l~ 304 (332)
T TIGR01607 230 VNDII-KFDKFRYDGGITFNLASELIKATDTLDCDIDYIPKDIPILFIHSKGDCVCS--YEGTVSFYNKLSIS--NKELH 304 (332)
T ss_pred hhhHH-hcCccccCCcccHHHHHHHHHHHHHHHhhHhhCCCCCCEEEEEeCCCCccC--HHHHHHHHHhccCC--CcEEE
Confidence 00000 0011 1123344 6899999999999998 88888888776543 36788
Q ss_pred EeCCCCccCCCcccHHHHHHHHHHHHH
Q 002209 869 ILPFESHGYAARESIMHVLWETDRWLQ 895 (953)
Q Consensus 869 ~~~~~~H~~~~~~~~~~~~~~i~~fl~ 895 (953)
+|++++|.+......+.+++.+.+||+
T Consensus 305 ~~~g~~H~i~~E~~~~~v~~~i~~wL~ 331 (332)
T TIGR01607 305 TLEDMDHVITIEPGNEEVLKKIIEWIS 331 (332)
T ss_pred EECCCCCCCccCCCHHHHHHHHHHHhh
Confidence 999999998766667889999999985
No 66
>COG2945 Predicted hydrolase of the alpha/beta superfamily [General function prediction only]
Probab=99.58 E-value=2.4e-14 Score=132.82 Aligned_cols=201 Identities=16% Similarity=0.204 Sum_probs=141.1
Q ss_pred EEEEEEcCCCcEEEEEEEcCCCCCCCCCCCccEEEEeCCCCCcCcCCCCcccCCCCCCCCccchHHHHHHHcCcEEEEcC
Q 002209 640 ELIKYQRKDGVQLSATLYLPPGYDPSKDGPLPCLFWSYPGEFKSKDAAGQVRGSPNEFPRIGSTSVLLWLARGFAILGGP 719 (953)
Q Consensus 640 ~~~~~~~~dg~~~~~~l~~P~~~~~~~~~~~P~vv~~hGg~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~G~~V~~~~ 719 (953)
..+.+...-| .+.+ .|.|.. ....|+.|.+|..|...+... ...-...+..|.++||+++.
T Consensus 5 ~~v~i~Gp~G-~le~-~~~~~~-----~~~~~iAli~HPHPl~gGtm~----------nkvv~~la~~l~~~G~atlR-- 65 (210)
T COG2945 5 PTVIINGPAG-RLEG-RYEPAK-----TPAAPIALICHPHPLFGGTMN----------NKVVQTLARALVKRGFATLR-- 65 (210)
T ss_pred CcEEecCCcc-ccee-ccCCCC-----CCCCceEEecCCCccccCccC----------CHHHHHHHHHHHhCCceEEe--
Confidence 3445555444 2333 344443 234899999999875544332 22223456678899999999
Q ss_pred CCCCCCCCChhhhhhhHHHHHHHHHHHHHHHHHcCCCCCCcEEEEEeChHHHHHHHHHHhCCCcccEEEEcccCCCCCCC
Q 002209 720 TTPIIGEGDEEANDRFVEQLVACAEAAVEEVVRRGVAHPSKIAVGGHSYGAFMTANLLAHAPHLFCCGIARSGAYNRTLT 799 (953)
Q Consensus 720 ~~~~~G~G~~~~~~~~~~~~~~D~~~~~~~l~~~~~~d~~~i~l~G~S~GG~~a~~~a~~~p~~~~a~v~~~~~~d~~~~ 799 (953)
++++|-|++.+.-+.+-.+++|+.++++|+.++.. +..-..++|+|+|+++++.++.+.|+ ....+++.|..+. +
T Consensus 66 -fNfRgVG~S~G~fD~GiGE~~Da~aaldW~~~~hp-~s~~~~l~GfSFGa~Ia~~la~r~~e-~~~~is~~p~~~~--~ 140 (210)
T COG2945 66 -FNFRGVGRSQGEFDNGIGELEDAAAALDWLQARHP-DSASCWLAGFSFGAYIAMQLAMRRPE-ILVFISILPPINA--Y 140 (210)
T ss_pred -ecccccccccCcccCCcchHHHHHHHHHHHHhhCC-CchhhhhcccchHHHHHHHHHHhccc-ccceeeccCCCCc--h
Confidence 55578888877777778899999999999998742 22335789999999999999999975 5556666665441 0
Q ss_pred CcCcccccchhhhhHHHHHhcCcccccCCCCCcEEEEEeCCCCCCCCchHHHHHHHHHHHhCCCcEEEEEeCCCCccCCC
Q 002209 800 PFGFQNEDRTLWEATSTYVEMSPFMSANKLKKPILLVHGEEDNNSGTLTMQSDRFFNALKGHGALCRLVILPFESHGYAA 879 (953)
Q Consensus 800 ~~~~~~~~~~~~~~~~~~~~~sp~~~~~~i~~P~Li~~G~~D~~v~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~H~~~~ 879 (953)
. + ..+.-...|.++++|+.|++|+ .....++.+- .+.+++..++++|.|.
T Consensus 141 d----------------f------s~l~P~P~~~lvi~g~~Ddvv~--l~~~l~~~~~-----~~~~~i~i~~a~HFF~- 190 (210)
T COG2945 141 D----------------F------SFLAPCPSPGLVIQGDADDVVD--LVAVLKWQES-----IKITVITIPGADHFFH- 190 (210)
T ss_pred h----------------h------hhccCCCCCceeEecChhhhhc--HHHHHHhhcC-----CCCceEEecCCCceec-
Confidence 0 0 1122356899999999999988 6666665443 5678899999999884
Q ss_pred cccHHHHHHHHHHHHH
Q 002209 880 RESIMHVLWETDRWLQ 895 (953)
Q Consensus 880 ~~~~~~~~~~i~~fl~ 895 (953)
.....+.+.+.+|+.
T Consensus 191 -gKl~~l~~~i~~~l~ 205 (210)
T COG2945 191 -GKLIELRDTIADFLE 205 (210)
T ss_pred -ccHHHHHHHHHHHhh
Confidence 445677788888884
No 67
>PF06500 DUF1100: Alpha/beta hydrolase of unknown function (DUF1100); InterPro: IPR010520 Proteins in this entry display esterase activity toward pNP-butyrate []. This entry also includes 2,6-dihydropseudooxynicotine hydrolase which has a role in nicotine catabolism by cleaving a C-C bond in 2,6-dihydroxypseudooxyicotine [, ].; PDB: 3OUR_A 3MVE_B 2JBW_C.
Probab=99.58 E-value=2e-14 Score=153.52 Aligned_cols=227 Identities=17% Similarity=0.182 Sum_probs=135.8
Q ss_pred CCceEEEEEEcCCCcEEEEEEEcCCCCCCCCCCCccEEEEeCCCCCcCcCCCCcccCCCCCCCCccc-hHHHHHHHcCcE
Q 002209 636 SLQKELIKYQRKDGVQLSATLYLPPGYDPSKDGPLPCLFWSYPGEFKSKDAAGQVRGSPNEFPRIGS-TSVLLWLARGFA 714 (953)
Q Consensus 636 ~~~~~~~~~~~~dg~~~~~~l~~P~~~~~~~~~~~P~vv~~hGg~~~~~~~~~~~~~~~~~~~~~~~-~~~~~la~~G~~ 714 (953)
....++++++-.+ ..|++++.+|++ .+|.|+||++-|-. .+..-.. .+..+|+.+|++
T Consensus 162 ~~~i~~v~iP~eg-~~I~g~LhlP~~-----~~p~P~VIv~gGlD---------------s~qeD~~~l~~~~l~~rGiA 220 (411)
T PF06500_consen 162 DYPIEEVEIPFEG-KTIPGYLHLPSG-----EKPYPTVIVCGGLD---------------SLQEDLYRLFRDYLAPRGIA 220 (411)
T ss_dssp SSEEEEEEEEETT-CEEEEEEEESSS-----SS-EEEEEEE--TT---------------S-GGGGHHHHHCCCHHCT-E
T ss_pred CCCcEEEEEeeCC-cEEEEEEEcCCC-----CCCCCEEEEeCCcc---------------hhHHHHHHHHHHHHHhCCCE
Confidence 4567888888754 899999999984 45799999876521 1211111 122347889999
Q ss_pred EEEcCCCCCCCCCChhhhhhhHHHHHHHHHHHHHHHHHcCCCCCCcEEEEEeChHHHHHHHHHHhCCCcccEEEEcccCC
Q 002209 715 ILGGPTTPIIGEGDEEANDRFVEQLVACAEAAVEEVVRRGVAHPSKIAVGGHSYGAFMTANLLAHAPHLFCCGIARSGAY 794 (953)
Q Consensus 715 V~~~~~~~~~G~G~~~~~~~~~~~~~~D~~~~~~~l~~~~~~d~~~i~l~G~S~GG~~a~~~a~~~p~~~~a~v~~~~~~ 794 (953)
+++. +..|.|.+.... .-++.-.-..++++||.+.+++|.+||+++|.|+||+.|..+|...+++++|+|+..|++
T Consensus 221 ~Ltv---DmPG~G~s~~~~-l~~D~~~l~~aVLd~L~~~p~VD~~RV~~~G~SfGGy~AvRlA~le~~RlkavV~~Ga~v 296 (411)
T PF06500_consen 221 MLTV---DMPGQGESPKWP-LTQDSSRLHQAVLDYLASRPWVDHTRVGAWGFSFGGYYAVRLAALEDPRLKAVVALGAPV 296 (411)
T ss_dssp EEEE-----TTSGGGTTT--S-S-CCHHHHHHHHHHHHSTTEEEEEEEEEEETHHHHHHHHHHHHTTTT-SEEEEES---
T ss_pred EEEE---ccCCCcccccCC-CCcCHHHHHHHHHHHHhcCCccChhheEEEEeccchHHHHHHHHhcccceeeEeeeCchH
Confidence 9994 445666653210 101111113477999999999999999999999999999999987778999999999876
Q ss_pred CCCCCCcCccccc------------chh---hhh-HHHHHhcCccc--cc--CCCCCcEEEEEeCCCCCCCCchHHHHHH
Q 002209 795 NRTLTPFGFQNED------------RTL---WEA-TSTYVEMSPFM--SA--NKLKKPILLVHGEEDNNSGTLTMQSDRF 854 (953)
Q Consensus 795 d~~~~~~~~~~~~------------~~~---~~~-~~~~~~~sp~~--~~--~~i~~P~Li~~G~~D~~v~~~~~~~~~~ 854 (953)
+..++........ +.. ++. ...+..+|... .+ .+..+|+|.+.|++|.++| .++.+-+
T Consensus 297 h~~ft~~~~~~~~P~my~d~LA~rlG~~~~~~~~l~~el~~~SLk~qGlL~~rr~~~plL~i~~~~D~v~P--~eD~~li 374 (411)
T PF06500_consen 297 HHFFTDPEWQQRVPDMYLDVLASRLGMAAVSDESLRGELNKFSLKTQGLLSGRRCPTPLLAINGEDDPVSP--IEDSRLI 374 (411)
T ss_dssp SCGGH-HHHHTTS-HHHHHHHHHHCT-SCE-HHHHHHHGGGGSTTTTTTTTSS-BSS-EEEEEETT-SSS---HHHHHHH
T ss_pred hhhhccHHHHhcCCHHHHHHHHHHhCCccCCHHHHHHHHHhcCcchhccccCCCCCcceEEeecCCCCCCC--HHHHHHH
Confidence 5433321110000 000 000 12223455533 23 6678999999999999998 7776544
Q ss_pred HHHHHhCCCcEEEEEeCCCC-ccCCCcccHHHHHHHHHHHHHHhc
Q 002209 855 FNALKGHGALCRLVILPFES-HGYAARESIMHVLWETDRWLQKYC 898 (953)
Q Consensus 855 ~~~l~~~g~~~~~~~~~~~~-H~~~~~~~~~~~~~~i~~fl~~~l 898 (953)
. ..+.+-+...++... |. .....+..+.+||++.|
T Consensus 375 a----~~s~~gk~~~~~~~~~~~-----gy~~al~~~~~Wl~~~l 410 (411)
T PF06500_consen 375 A----ESSTDGKALRIPSKPLHM-----GYPQALDEIYKWLEDKL 410 (411)
T ss_dssp H----HTBTT-EEEEE-SSSHHH-----HHHHHHHHHHHHHHHHH
T ss_pred H----hcCCCCceeecCCCcccc-----chHHHHHHHHHHHHHhc
Confidence 3 334444666666544 43 23567889999999865
No 68
>COG0657 Aes Esterase/lipase [Lipid metabolism]
Probab=99.56 E-value=1.4e-13 Score=149.79 Aligned_cols=224 Identities=20% Similarity=0.211 Sum_probs=150.2
Q ss_pred cCCCcEEEEEEEcCCCCCCCCCCCccEEEEeCCCCCcCcCCCCcccCCCCCCCCccchHHHHHHHcCcEEEEcCCCCCCC
Q 002209 646 RKDGVQLSATLYLPPGYDPSKDGPLPCLFWSYPGEFKSKDAAGQVRGSPNEFPRIGSTSVLLWLARGFAILGGPTTPIIG 725 (953)
Q Consensus 646 ~~dg~~~~~~l~~P~~~~~~~~~~~P~vv~~hGg~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~G~~V~~~~~~~~~G 725 (953)
...+..+.+.+|.|.. ....+.|+|||+|||.|..+ +...+ .......++..|+.|+.++|+-
T Consensus 58 ~~~~~~~~~~~y~p~~---~~~~~~p~vly~HGGg~~~g--------~~~~~---~~~~~~~~~~~g~~vv~vdYrl--- 120 (312)
T COG0657 58 GPSGDGVPVRVYRPDR---KAAATAPVVLYLHGGGWVLG--------SLRTH---DALVARLAAAAGAVVVSVDYRL--- 120 (312)
T ss_pred CCCCCceeEEEECCCC---CCCCCCcEEEEEeCCeeeec--------Chhhh---HHHHHHHHHHcCCEEEecCCCC---
Confidence 3455567899999921 12335899999999864432 22222 1233445567999999988843
Q ss_pred CCChhhhhhhHHHHHHHHHHHHHHHHHcC---CCCCCcEEEEEeChHHHHHHHHHHhCCC----cccEEEEcccCCCCCC
Q 002209 726 EGDEEANDRFVEQLVACAEAAVEEVVRRG---VAHPSKIAVGGHSYGAFMTANLLAHAPH----LFCCGIARSGAYNRTL 798 (953)
Q Consensus 726 ~G~~~~~~~~~~~~~~D~~~~~~~l~~~~---~~d~~~i~l~G~S~GG~~a~~~a~~~p~----~~~a~v~~~~~~d~~~ 798 (953)
.++..++..++|+.+++.|+.++. .+|+++|+|+|+|.||.+++.++....+ ..++.+.++|..|...
T Consensus 121 -----aPe~~~p~~~~d~~~a~~~l~~~~~~~g~dp~~i~v~GdSAGG~La~~~a~~~~~~~~~~p~~~~li~P~~d~~~ 195 (312)
T COG0657 121 -----APEHPFPAALEDAYAAYRWLRANAAELGIDPSRIAVAGDSAGGHLALALALAARDRGLPLPAAQVLISPLLDLTS 195 (312)
T ss_pred -----CCCCCCCchHHHHHHHHHHHHhhhHhhCCCccceEEEecCcccHHHHHHHHHHHhcCCCCceEEEEEecccCCcc
Confidence 333345788899999999998763 4899999999999999999999876532 4788899999888654
Q ss_pred CCcCccccc-chhh----h---hHHHHH---------hcCccccc--CCCCCcEEEEEeCCCCCCCCchHHHHHHHHHHH
Q 002209 799 TPFGFQNED-RTLW----E---ATSTYV---------EMSPFMSA--NKLKKPILLVHGEEDNNSGTLTMQSDRFFNALK 859 (953)
Q Consensus 799 ~~~~~~~~~-~~~~----~---~~~~~~---------~~sp~~~~--~~i~~P~Li~~G~~D~~v~~~~~~~~~~~~~l~ 859 (953)
....+.... .... . -...|. ..+|+... .. -.|++|++|+.|.. ..+++.+.++|+
T Consensus 196 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~spl~~~~~~~-lPP~~i~~a~~D~l----~~~~~~~a~~L~ 270 (312)
T COG0657 196 SAASLPGYGEADLLDAAAILAWFADLYLGAAPDREDPEASPLASDDLSG-LPPTLIQTAEFDPL----RDEGEAYAERLR 270 (312)
T ss_pred cccchhhcCCccccCHHHHHHHHHHHhCcCccccCCCccCccccccccC-CCCEEEEecCCCcc----hhHHHHHHHHHH
Confidence 110110000 0000 0 000010 12343322 22 46899999999987 458999999999
Q ss_pred hCCCcEEEEEeCCCCccCC--CcccHHHHHHHHHHHHHH
Q 002209 860 GHGALCRLVILPFESHGYA--ARESIMHVLWETDRWLQK 896 (953)
Q Consensus 860 ~~g~~~~~~~~~~~~H~~~--~~~~~~~~~~~i~~fl~~ 896 (953)
+.|+++++..++++.|.|. ........+..+.+|+.+
T Consensus 271 ~agv~~~~~~~~g~~H~f~~~~~~~a~~~~~~~~~~l~~ 309 (312)
T COG0657 271 AAGVPVELRVYPGMIHGFDLLTGPEARSALRQIAAFLRA 309 (312)
T ss_pred HcCCeEEEEEeCCcceeccccCcHHHHHHHHHHHHHHHH
Confidence 9999999999999999883 222334455667777663
No 69
>PF02129 Peptidase_S15: X-Pro dipeptidyl-peptidase (S15 family); InterPro: IPR000383 This entry represents a domain found peptidases Xaa-Pro dipeptidyl-peptidase and glutaryl-7-aminocephalosporanic-acid acylase, which belong to MEROPS peptidase families S15 and S45 respectively []. It is also found in hydrolases from the CocE/NonD family. Cocaine esterase (CocE) hydrolyzes cocaine endowing the bacteria with the ability to utilise cocaine as a sole source of carbon and energy []. ; GO: 0004177 aminopeptidase activity, 0006508 proteolysis; PDB: 1LNS_A 3PUI_A 3PUH_B 1JU3_A 3I2I_A 3I2G_A 1JU4_A 3I2K_A 3IDA_A 3I2H_A ....
Probab=99.56 E-value=6.6e-14 Score=148.86 Aligned_cols=213 Identities=25% Similarity=0.321 Sum_probs=136.2
Q ss_pred CCcEEEEEEEcCCCCCCCCCCCccEEEEeCCCCCcCcCCCCcccCCCCCCCCccchHHHHHHHcCcEEEEcCCCCCCCCC
Q 002209 648 DGVQLSATLYLPPGYDPSKDGPLPCLFWSYPGEFKSKDAAGQVRGSPNEFPRIGSTSVLLWLARGFAILGGPTTPIIGEG 727 (953)
Q Consensus 648 dg~~~~~~l~~P~~~~~~~~~~~P~vv~~hGg~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~G~~V~~~~~~~~~G~G 727 (953)
||.+|.+.+|+| +... .+++|+||..|+...... ...... ............|+++||+||. .+.+|.|
T Consensus 1 DGv~L~adv~~P-~~~~--~~~~P~il~~tpY~~~~~-~~~~~~----~~~~~~~~~~~~~~~~GY~vV~---~D~RG~g 69 (272)
T PF02129_consen 1 DGVRLAADVYRP-GADG--GGPFPVILTRTPYGKGDQ-TASDLA----GANPGPPSARRPFAERGYAVVV---QDVRGTG 69 (272)
T ss_dssp TS-EEEEEEEEE---TT--SSSEEEEEEEESSTCTC--HHHHHH----TTCHHSHGGGHHHHHTT-EEEE---EE-TTST
T ss_pred CCCEEEEEEEec-CCCC--CCcccEEEEccCcCCCCC-cccchh----hhhcccchhHHHHHhCCCEEEE---ECCcccc
Confidence 799999999999 3222 457999999987421000 000000 0000000001238999999999 4556777
Q ss_pred Chhhhhhh-HHHHHHHHHHHHHHHHHcCCCCCCcEEEEEeChHHHHHHHHHHhCCCcccEEEEcccCCCCCCC---CcCc
Q 002209 728 DEEANDRF-VEQLVACAEAAVEEVVRRGVAHPSKIAVGGHSYGAFMTANLLAHAPHLFCCGIARSGAYNRTLT---PFGF 803 (953)
Q Consensus 728 ~~~~~~~~-~~~~~~D~~~~~~~l~~~~~~d~~~i~l~G~S~GG~~a~~~a~~~p~~~~a~v~~~~~~d~~~~---~~~~ 803 (953)
.|.+.... ...+..|..++|+|+.++++.+ .||+++|.||+|+.++.+|+..|..+||+++..+..|.... +-+.
T Consensus 70 ~S~G~~~~~~~~e~~D~~d~I~W~~~Qpws~-G~VGm~G~SY~G~~q~~~A~~~~p~LkAi~p~~~~~d~~~~~~~~gG~ 148 (272)
T PF02129_consen 70 GSEGEFDPMSPNEAQDGYDTIEWIAAQPWSN-GKVGMYGISYGGFTQWAAAARRPPHLKAIVPQSGWSDLYRDSIYPGGA 148 (272)
T ss_dssp TS-S-B-TTSHHHHHHHHHHHHHHHHCTTEE-EEEEEEEETHHHHHHHHHHTTT-TTEEEEEEESE-SBTCCTSSEETTE
T ss_pred cCCCccccCChhHHHHHHHHHHHHHhCCCCC-CeEEeeccCHHHHHHHHHHhcCCCCceEEEecccCCcccccchhcCCc
Confidence 77665544 7889999999999999998765 69999999999999999999888899999999887774331 0010
Q ss_pred ccc-cchhh---------------------h-------------------------------hHHHHHhcCcccccCCCC
Q 002209 804 QNE-DRTLW---------------------E-------------------------------ATSTYVEMSPFMSANKLK 830 (953)
Q Consensus 804 ~~~-~~~~~---------------------~-------------------------------~~~~~~~~sp~~~~~~i~ 830 (953)
... ....| . ....+.+.++...+.+++
T Consensus 149 ~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~i~ 228 (272)
T PF02129_consen 149 FRLGFFAGWEDLQSQQEDPQSRPAPDRDYLRERARYEALGDSPLGRLPRDPPYWDEWLDHPPYDPFWQERSPSERLDKID 228 (272)
T ss_dssp EBCCHHHHHHHHHHHHHHHTCCCCSSSHHHHHHHHHHCHHHHHHHHCHGGTHHHHHHHHT-SSSHHHHTTBHHHHHGG--
T ss_pred ccccchhHHHHHHHHhhcccCCCchhhhhhhhhhhhhhhhhHHHhhhccccHHHHHHHhCCCcCHHHHhCChHHHHhhCC
Confidence 000 00011 0 001122233344568899
Q ss_pred CcEEEEEeCCCCCCCCchHHHHHHHHHHHhCC-CcEEEEEeCCCCcc
Q 002209 831 KPILLVHGEEDNNSGTLTMQSDRFFNALKGHG-ALCRLVILPFESHG 876 (953)
Q Consensus 831 ~P~Li~~G~~D~~v~~~~~~~~~~~~~l~~~g-~~~~~~~~~~~~H~ 876 (953)
+|+|+++|..|..+ ...+.+.|++++..+ .+.++++-|. +|.
T Consensus 229 vP~l~v~Gw~D~~~---~~~~~~~~~~l~~~~~~~~~Liigpw-~H~ 271 (272)
T PF02129_consen 229 VPVLIVGGWYDTLF---LRGALRAYEALRAPGSKPQRLIIGPW-THG 271 (272)
T ss_dssp SEEEEEEETTCSST---SHHHHHHHHHHCTTSTC-EEEEEESE-STT
T ss_pred CCEEEecccCCccc---chHHHHHHHHhhcCCCCCCEEEEeCC-CCC
Confidence 99999999999765 478899999999988 7889998886 775
No 70
>TIGR03100 hydr1_PEP hydrolase, ortholog 1, exosortase system type 1 associated. This group of proteins are members of the alpha/beta hydrolase superfamily. These proteins are generally found in genomes containing the exosortase/PEP-CTERM protein expoert system, specifically the type 1 variant of this system described by the Genome Property GenProp0652. When found in this context they are invariably present in the vicinity of a second, relatively unrelated enzyme (ortholog 2, TIGR03101) of the same superfamily.
Probab=99.56 E-value=2.7e-13 Score=144.27 Aligned_cols=230 Identities=15% Similarity=0.130 Sum_probs=142.2
Q ss_pred EEEEEEcCCCcEEEEEEEcCCCCCCCCCCCccEEEEeCCCCCcCcCCCCcccCCCCCCCCccchHHHHHHHcCcEEEEcC
Q 002209 640 ELIKYQRKDGVQLSATLYLPPGYDPSKDGPLPCLFWSYPGEFKSKDAAGQVRGSPNEFPRIGSTSVLLWLARGFAILGGP 719 (953)
Q Consensus 640 ~~~~~~~~dg~~~~~~l~~P~~~~~~~~~~~P~vv~~hGg~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~G~~V~~~~ 719 (953)
+.+.|.. +|..+.++++.|.+. + .+.||++|||+.. ..+. +. .....+..|+++||.|++
T Consensus 3 ~~~~~~~-~~~~l~g~~~~p~~~---~---~~~vv~i~gg~~~--------~~g~--~~-~~~~la~~l~~~G~~v~~-- 62 (274)
T TIGR03100 3 RALTFSC-EGETLVGVLHIPGAS---H---TTGVLIVVGGPQY--------RVGS--HR-QFVLLARRLAEAGFPVLR-- 62 (274)
T ss_pred eeEEEEc-CCcEEEEEEEcCCCC---C---CCeEEEEeCCccc--------cCCc--hh-HHHHHHHHHHHCCCEEEE--
Confidence 4566764 678899999999641 1 2456666765311 1000 10 012345678899999999
Q ss_pred CCCCCCCCChhhhhhhHHHHHHHHHHHHHHHHHcCCCCCCcEEEEEeChHHHHHHHHHHhCCCcccEEEEcccCCCCCCC
Q 002209 720 TTPIIGEGDEEANDRFVEQLVACAEAAVEEVVRRGVAHPSKIAVGGHSYGAFMTANLLAHAPHLFCCGIARSGAYNRTLT 799 (953)
Q Consensus 720 ~~~~~G~G~~~~~~~~~~~~~~D~~~~~~~l~~~~~~d~~~i~l~G~S~GG~~a~~~a~~~p~~~~a~v~~~~~~d~~~~ 799 (953)
++.+|+|.+............|+.++++++.+... ..++|.++|||+||.+++.++... +.++++|+++|.+.....
T Consensus 63 -~Dl~G~G~S~~~~~~~~~~~~d~~~~~~~l~~~~~-g~~~i~l~G~S~Gg~~a~~~a~~~-~~v~~lil~~p~~~~~~~ 139 (274)
T TIGR03100 63 -FDYRGMGDSEGENLGFEGIDADIAAAIDAFREAAP-HLRRIVAWGLCDAASAALLYAPAD-LRVAGLVLLNPWVRTEAA 139 (274)
T ss_pred -eCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHhhCC-CCCcEEEEEECHHHHHHHHHhhhC-CCccEEEEECCccCCccc
Confidence 55568887754333446678999999999986521 235799999999999999887664 689999999987431110
Q ss_pred CcC------cc--cccchhhhh-----------HHHHHh----cCc--------------ccccCCCCCcEEEEEeCCCC
Q 002209 800 PFG------FQ--NEDRTLWEA-----------TSTYVE----MSP--------------FMSANKLKKPILLVHGEEDN 842 (953)
Q Consensus 800 ~~~------~~--~~~~~~~~~-----------~~~~~~----~sp--------------~~~~~~i~~P~Li~~G~~D~ 842 (953)
... +. ......|.. ...+.. ..+ ...+.++++|+|+++|..|.
T Consensus 140 ~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~P~ll~~g~~D~ 219 (274)
T TIGR03100 140 QAASRIRHYYLGQLLSADFWRKLLSGEVNLGSSLRGLGDALLKARQKGDEVAHGGLAERMKAGLERFQGPVLFILSGNDL 219 (274)
T ss_pred chHHHHHHHHHHHHhChHHHHHhcCCCccHHHHHHHHHHHHHhhhhcCCCcccchHHHHHHHHHHhcCCcEEEEEcCcch
Confidence 000 00 000011110 011111 101 01233568999999999997
Q ss_pred CCCCchHH-----HHHHHHHHHhCCCcEEEEEeCCCCccCCCcccHHHHHHHHHHHHHH
Q 002209 843 NSGTLTMQ-----SDRFFNALKGHGALCRLVILPFESHGYAARESIMHVLWETDRWLQK 896 (953)
Q Consensus 843 ~v~~~~~~-----~~~~~~~l~~~g~~~~~~~~~~~~H~~~~~~~~~~~~~~i~~fl~~ 896 (953)
..+ ... +.++.+.+.. ..++++.+++++|.++.......+.+.+.+||++
T Consensus 220 ~~~--~~~~~~~~~~~~~~~l~~--~~v~~~~~~~~~H~l~~e~~~~~v~~~i~~wL~~ 274 (274)
T TIGR03100 220 TAQ--EFADSVLGEPAWRGALED--PGIERVEIDGADHTFSDRVWREWVAARTTEWLRR 274 (274)
T ss_pred hHH--HHHHHhccChhhHHHhhc--CCeEEEecCCCCcccccHHHHHHHHHHHHHHHhC
Confidence 643 111 0222222322 3478999999999887666778899999999863
No 71
>KOG1515 consensus Arylacetamide deacetylase [Defense mechanisms]
Probab=99.54 E-value=4.1e-13 Score=142.22 Aligned_cols=232 Identities=16% Similarity=0.083 Sum_probs=155.9
Q ss_pred EEEEEEcCCCcEEEEEEEcCCCCCCCCCCCccEEEEeCCCCCcCcCCCCcccCCCCCCCCccchHHHHH-HHcCcEEEEc
Q 002209 640 ELIKYQRKDGVQLSATLYLPPGYDPSKDGPLPCLFWSYPGEFKSKDAAGQVRGSPNEFPRIGSTSVLLW-LARGFAILGG 718 (953)
Q Consensus 640 ~~~~~~~~dg~~~~~~l~~P~~~~~~~~~~~P~vv~~hGg~~~~~~~~~~~~~~~~~~~~~~~~~~~~l-a~~G~~V~~~ 718 (953)
..+++. ....+..++|+|....+.+ +.|+|||+|||.|..+.. ....+..+...+ .+.+++|+.+
T Consensus 64 ~dv~~~--~~~~l~vRly~P~~~~~~~--~~p~lvyfHGGGf~~~S~----------~~~~y~~~~~~~a~~~~~vvvSV 129 (336)
T KOG1515|consen 64 KDVTID--PFTNLPVRLYRPTSSSSET--KLPVLVYFHGGGFCLGSA----------NSPAYDSFCTRLAAELNCVVVSV 129 (336)
T ss_pred eeeEec--CCCCeEEEEEcCCCCCccc--CceEEEEEeCCccEeCCC----------CCchhHHHHHHHHHHcCeEEEec
Confidence 444444 3445889999998754422 499999999986554321 112223344455 4579999998
Q ss_pred CCCCCCCCCChhhhhhhHHHHHHHHHHHHHHHHHc----CCCCCCcEEEEEeChHHHHHHHHHHhC------CCcccEEE
Q 002209 719 PTTPIIGEGDEEANDRFVEQLVACAEAAVEEVVRR----GVAHPSKIAVGGHSYGAFMTANLLAHA------PHLFCCGI 788 (953)
Q Consensus 719 ~~~~~~G~G~~~~~~~~~~~~~~D~~~~~~~l~~~----~~~d~~~i~l~G~S~GG~~a~~~a~~~------p~~~~a~v 788 (953)
+|| .++++.++..++|..+|+.|+.++ ..+|++||+|+|-|.||.+|..++.+. +..+++.|
T Consensus 130 dYR--------LAPEh~~Pa~y~D~~~Al~w~~~~~~~~~~~D~~rv~l~GDSaGGNia~~va~r~~~~~~~~~ki~g~i 201 (336)
T KOG1515|consen 130 DYR--------LAPEHPFPAAYDDGWAALKWVLKNSWLKLGADPSRVFLAGDSAGGNIAHVVAQRAADEKLSKPKIKGQI 201 (336)
T ss_pred Ccc--------cCCCCCCCccchHHHHHHHHHHHhHHHHhCCCcccEEEEccCccHHHHHHHHHHHhhccCCCcceEEEE
Confidence 884 456666788999999999999875 568999999999999999999888642 34689999
Q ss_pred EcccCCCCCCC-CcCcc----cccchhhhhHHHHHh--------------cCccc-c----c-CCCCCcEEEEEeCCCCC
Q 002209 789 ARSGAYNRTLT-PFGFQ----NEDRTLWEATSTYVE--------------MSPFM-S----A-NKLKKPILLVHGEEDNN 843 (953)
Q Consensus 789 ~~~~~~d~~~~-~~~~~----~~~~~~~~~~~~~~~--------------~sp~~-~----~-~~i~~P~Li~~G~~D~~ 843 (953)
++.|++..... .-.++ ......+...+.+.. .+|.. . . ...-.|+||+.++.|..
T Consensus 202 li~P~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~w~~~lP~~~~~~~~p~~np~~~~~~~d~~~~~lp~tlv~~ag~D~L 281 (336)
T KOG1515|consen 202 LIYPFFQGTDRTESEKQQNLNGSPELARPKIDKWWRLLLPNGKTDLDHPFINPVGNSLAKDLSGLGLPPTLVVVAGYDVL 281 (336)
T ss_pred EEecccCCCCCCCHHHHHhhcCCcchhHHHHHHHHHHhCCCCCCCcCCccccccccccccCccccCCCceEEEEeCchhh
Confidence 99998763221 00000 000001111111111 12222 1 1 11134699999999966
Q ss_pred CCCchHHHHHHHHHHHhCCCcEEEEEeCCCCccCCCc----ccHHHHHHHHHHHHHHh
Q 002209 844 SGTLTMQSDRFFNALKGHGALCRLVILPFESHGYAAR----ESIMHVLWETDRWLQKY 897 (953)
Q Consensus 844 v~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~H~~~~~----~~~~~~~~~i~~fl~~~ 897 (953)
.+++..+.++|++.|+++++..++++.|++... .........+.+|+.+.
T Consensus 282 ----~D~~~~Y~~~Lkk~Gv~v~~~~~e~~~H~~~~~~~~~~~a~~~~~~i~~fi~~~ 335 (336)
T KOG1515|consen 282 ----RDEGLAYAEKLKKAGVEVTLIHYEDGFHGFHILDPSSKEAHALMDAIVEFIKSN 335 (336)
T ss_pred ----hhhhHHHHHHHHHcCCeEEEEEECCCeeEEEecCCchhhHHHHHHHHHHHHhhc
Confidence 688999999999999999999999999986421 24556777788887754
No 72
>TIGR03611 RutD pyrimidine utilization protein D. This protein is observed in operons extremely similar to that characterized in E. coli K-12 responsible for the import and catabolism of pyrimidines, primarily uracil. This protein is a member of the hydrolase, alpha/beta fold family defined by pfam00067.
Probab=99.54 E-value=2.4e-13 Score=144.00 Aligned_cols=194 Identities=14% Similarity=0.157 Sum_probs=123.9
Q ss_pred ccEEEEeCCCCCcCcCCCCcccCCCCCCCCccchHHHHHHHcCcEEEEcCCCCCCCCCChhhhh---hhHHHHHHHHHHH
Q 002209 670 LPCLFWSYPGEFKSKDAAGQVRGSPNEFPRIGSTSVLLWLARGFAILGGPTTPIIGEGDEEAND---RFVEQLVACAEAA 746 (953)
Q Consensus 670 ~P~vv~~hGg~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~G~~V~~~~~~~~~G~G~~~~~~---~~~~~~~~D~~~~ 746 (953)
.|+||++||.... ... +........+||.|+++ +.+|+|.+.... ........|+.+.
T Consensus 13 ~~~iv~lhG~~~~-----------~~~-----~~~~~~~l~~~~~vi~~---D~~G~G~S~~~~~~~~~~~~~~~~~~~~ 73 (257)
T TIGR03611 13 APVVVLSSGLGGS-----------GSY-----WAPQLDVLTQRFHVVTY---DHRGTGRSPGELPPGYSIAHMADDVLQL 73 (257)
T ss_pred CCEEEEEcCCCcc-----------hhH-----HHHHHHHHHhccEEEEE---cCCCCCCCCCCCcccCCHHHHHHHHHHH
Confidence 6889999995311 011 11222334578999994 446777764321 1234455566555
Q ss_pred HHHHHHcCCCCCCcEEEEEeChHHHHHHHHHHhCCCcccEEEEcccCCCCCCCCc-------------C-----------
Q 002209 747 VEEVVRRGVAHPSKIAVGGHSYGAFMTANLLAHAPHLFCCGIARSGAYNRTLTPF-------------G----------- 802 (953)
Q Consensus 747 ~~~l~~~~~~d~~~i~l~G~S~GG~~a~~~a~~~p~~~~a~v~~~~~~d~~~~~~-------------~----------- 802 (953)
++.+ +..++.++||||||.+++.++.++|+.++++|++++......... .
T Consensus 74 i~~~------~~~~~~l~G~S~Gg~~a~~~a~~~~~~v~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 147 (257)
T TIGR03611 74 LDAL------NIERFHFVGHALGGLIGLQLALRYPERLLSLVLINAWSRPDPHTRRCFDVRIALLQHAGPEAYVHAQALF 147 (257)
T ss_pred HHHh------CCCcEEEEEechhHHHHHHHHHHChHHhHHheeecCCCCCChhHHHHHHHHHHHHhccCcchhhhhhhhh
Confidence 5543 346899999999999999999999999999998887543210000 0
Q ss_pred -cc----cccch------------------hhhhHHHHHhcCcccccCCCCCcEEEEEeCCCCCCCCchHHHHHHHHHHH
Q 002209 803 -FQ----NEDRT------------------LWEATSTYVEMSPFMSANKLKKPILLVHGEEDNNSGTLTMQSDRFFNALK 859 (953)
Q Consensus 803 -~~----~~~~~------------------~~~~~~~~~~~sp~~~~~~i~~P~Li~~G~~D~~v~~~~~~~~~~~~~l~ 859 (953)
+. ..... .......+...+....+.++++|+|+++|++|..+| ++.+.++++.+.
T Consensus 148 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~P~l~i~g~~D~~~~--~~~~~~~~~~~~ 225 (257)
T TIGR03611 148 LYPADWISENAARLAADEAHALAHFPGKANVLRRINALEAFDVSARLDRIQHPVLLIANRDDMLVP--YTQSLRLAAALP 225 (257)
T ss_pred hccccHhhccchhhhhhhhhcccccCccHHHHHHHHHHHcCCcHHHhcccCccEEEEecCcCcccC--HHHHHHHHHhcC
Confidence 00 00000 000001111122334566789999999999999998 888888877664
Q ss_pred hCCCcEEEEEeCCCCccCCCcccHHHHHHHHHHHHH
Q 002209 860 GHGALCRLVILPFESHGYAARESIMHVLWETDRWLQ 895 (953)
Q Consensus 860 ~~g~~~~~~~~~~~~H~~~~~~~~~~~~~~i~~fl~ 895 (953)
. .+++.++++||... .++.+.+.+.+.+||+
T Consensus 226 ~----~~~~~~~~~gH~~~-~~~~~~~~~~i~~fl~ 256 (257)
T TIGR03611 226 N----AQLKLLPYGGHASN-VTDPETFNRALLDFLK 256 (257)
T ss_pred C----ceEEEECCCCCCcc-ccCHHHHHHHHHHHhc
Confidence 3 47888999999864 5667778888888875
No 73
>PF12695 Abhydrolase_5: Alpha/beta hydrolase family; PDB: 3D0K_B 2I3D_B 3DOH_B 3DOI_B 3PFB_A 3S2Z_B 3PFC_A 3QM1_A 3PF8_B 3PF9_A ....
Probab=99.54 E-value=1.4e-13 Score=131.62 Aligned_cols=129 Identities=25% Similarity=0.321 Sum_probs=96.2
Q ss_pred hHHHHHHHcCcEEEEcCCCCCCCCCChhhhhhhHHHHHHHHHHHHHHHHHcCCCCCCcEEEEEeChHHHHHHHHHHhCCC
Q 002209 703 TSVLLWLARGFAILGGPTTPIIGEGDEEANDRFVEQLVACAEAAVEEVVRRGVAHPSKIAVGGHSYGAFMTANLLAHAPH 782 (953)
Q Consensus 703 ~~~~~la~~G~~V~~~~~~~~~G~G~~~~~~~~~~~~~~D~~~~~~~l~~~~~~d~~~i~l~G~S~GG~~a~~~a~~~p~ 782 (953)
.....|+++||.|+.+++ .+.+.+.. ..++.++++++.+... |.++|+++|||+||.+++.++... +
T Consensus 17 ~~~~~l~~~G~~v~~~~~---~~~~~~~~--------~~~~~~~~~~~~~~~~-~~~~i~l~G~S~Gg~~a~~~~~~~-~ 83 (145)
T PF12695_consen 17 PLAEALAEQGYAVVAFDY---PGHGDSDG--------ADAVERVLADIRAGYP-DPDRIILIGHSMGGAIAANLAARN-P 83 (145)
T ss_dssp HHHHHHHHTTEEEEEESC---TTSTTSHH--------SHHHHHHHHHHHHHHC-TCCEEEEEEETHHHHHHHHHHHHS-T
T ss_pred HHHHHHHHCCCEEEEEec---CCCCccch--------hHHHHHHHHHHHhhcC-CCCcEEEEEEccCcHHHHHHhhhc-c
Confidence 456778999999999555 55555411 1144445555433222 788999999999999999999998 6
Q ss_pred cccEEEEcccCCCCCCCCcCcccccchhhhhHHHHHhcCcccccCCCCCcEEEEEeCCCCCCCCchHHHHHHHHHHHhCC
Q 002209 783 LFCCGIARSGAYNRTLTPFGFQNEDRTLWEATSTYVEMSPFMSANKLKKPILLVHGEEDNNSGTLTMQSDRFFNALKGHG 862 (953)
Q Consensus 783 ~~~a~v~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~sp~~~~~~i~~P~Li~~G~~D~~v~~~~~~~~~~~~~l~~~g 862 (953)
.++++|+++|..+ ...+.+.+.|+|+++|++|..++ +++.++++++++
T Consensus 84 ~v~~~v~~~~~~~---------------------------~~~~~~~~~pv~~i~g~~D~~~~--~~~~~~~~~~~~--- 131 (145)
T PF12695_consen 84 RVKAVVLLSPYPD---------------------------SEDLAKIRIPVLFIHGENDPLVP--PEQVRRLYEALP--- 131 (145)
T ss_dssp TESEEEEESESSG---------------------------CHHHTTTTSEEEEEEETT-SSSH--HHHHHHHHHHHC---
T ss_pred ceeEEEEecCccc---------------------------hhhhhccCCcEEEEEECCCCcCC--HHHHHHHHHHcC---
Confidence 8999999998200 11223567899999999999998 999999999987
Q ss_pred CcEEEEEeCCCCcc
Q 002209 863 ALCRLVILPFESHG 876 (953)
Q Consensus 863 ~~~~~~~~~~~~H~ 876 (953)
.+.+++++++++|+
T Consensus 132 ~~~~~~~i~g~~H~ 145 (145)
T PF12695_consen 132 GPKELYIIPGAGHF 145 (145)
T ss_dssp SSEEEEEETTS-TT
T ss_pred CCcEEEEeCCCcCc
Confidence 45899999999995
No 74
>KOG0318 consensus WD40 repeat stress protein/actin interacting protein [Cytoskeleton]
Probab=99.54 E-value=2.9e-11 Score=127.63 Aligned_cols=139 Identities=22% Similarity=0.239 Sum_probs=81.3
Q ss_pred CcccceEeccCCCeEEEEEeeccccCCCCcceEEEEECCCCceeecccCCCccccccccceEEecCCeEEEEEecCCCCC
Q 002209 189 AKLNFVTWSQDGKHLAFSIRIDAEDSSSSKLRVWVADVDTGKARPLFQSPDIYLNAIFDNFVWVNNSTLLVCTIPLLRGD 268 (953)
Q Consensus 189 ~~~~~~~wSPDG~~laf~~~~~~~~~~~~~~~l~~~d~~~g~~~~lt~~~~~~~~~~~~~~~wspDg~~l~~~~~~~~~~ 268 (953)
..+...++||||++.+.+. ....++++|-.+|+..-.... ...+.+.+..++||||+++++.+..++.
T Consensus 191 kFV~~VRysPDG~~Fat~g---------sDgki~iyDGktge~vg~l~~-~~aHkGsIfalsWsPDs~~~~T~SaDkt-- 258 (603)
T KOG0318|consen 191 KFVNCVRYSPDGSRFATAG---------SDGKIYIYDGKTGEKVGELED-SDAHKGSIFALSWSPDSTQFLTVSADKT-- 258 (603)
T ss_pred cceeeEEECCCCCeEEEec---------CCccEEEEcCCCccEEEEecC-CCCccccEEEEEECCCCceEEEecCCce--
Confidence 3788899999999988865 367899999888876544332 2234555789999999999997744433
Q ss_pred CCCCCCCCCCCceeecCCCccccchhhhhhcCCcchhhhhhhhccceEEEEEcCCceeE-----------eCCC-Ccccc
Q 002209 269 PPKKPLVPLGPKMQSNEKRDIIQVRTFQDLLKDEYDEDLFDYYATTQLVLVSLDGTVKE-----------IGPP-AVYTS 336 (953)
Q Consensus 269 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~l~~~~~~g~~~~-----------l~~~-~~~~~ 336 (953)
.++|+.....+...-.+.+. -.|...-.+.....|..+.++|...- +... ..++.
T Consensus 259 ----------~KIWdVs~~slv~t~~~~~~---v~dqqvG~lWqkd~lItVSl~G~in~ln~~d~~~~~~i~GHnK~ITa 325 (603)
T KOG0318|consen 259 ----------IKIWDVSTNSLVSTWPMGST---VEDQQVGCLWQKDHLITVSLSGTINYLNPSDPSVLKVISGHNKSITA 325 (603)
T ss_pred ----------EEEEEeeccceEEEeecCCc---hhceEEEEEEeCCeEEEEEcCcEEEEecccCCChhheecccccceeE
Confidence 23443332222111100000 01111111112334444444443322 2233 67889
Q ss_pred cccCCCCcEEEEEEec
Q 002209 337 LDPSPDEKYILISSIH 352 (953)
Q Consensus 337 ~~~SpDG~~l~~~~~~ 352 (953)
+..||||++|+..+.+
T Consensus 326 Ltv~~d~~~i~SgsyD 341 (603)
T KOG0318|consen 326 LTVSPDGKTIYSGSYD 341 (603)
T ss_pred EEEcCCCCEEEeeccC
Confidence 9999999998877644
No 75
>KOG0272 consensus U4/U6 small nuclear ribonucleoprotein Prp4 (contains WD40 repeats) [RNA processing and modification]
Probab=99.53 E-value=1.5e-13 Score=140.86 Aligned_cols=271 Identities=14% Similarity=0.102 Sum_probs=177.5
Q ss_pred hcCCCCCCceecCCCCEEEEEecCCCCCccccccc---------cceeceEEecCCC-C-CCcceeeeeceEEEEccCCC
Q 002209 106 VDAPPLPALSFSPQRDKILFLKRRALPPLEELARP---------EEKLAGLRIDGKC-N-TRSRMSFYTGIGIHQLFPDG 174 (953)
Q Consensus 106 ~~~~~~~~~~~SPDG~~la~~~~~~~~~~~~~~~~---------~~~~~~~~~~~~~-~-~~~~~~~~~~i~i~~~~~~g 174 (953)
-+..++...+||+||+.||..+..+...++...+- ..+++.+++.|.. + .....+.++.+.+|++..
T Consensus 173 gd~rPis~~~fS~ds~~laT~swsG~~kvW~~~~~~~~~~l~gH~~~v~~~~fhP~~~~~~lat~s~Dgtvklw~~~~-- 250 (459)
T KOG0272|consen 173 GDTRPISGCSFSRDSKHLATGSWSGLVKVWSVPQCNLLQTLRGHTSRVGAAVFHPVDSDLNLATASADGTVKLWKLSQ-- 250 (459)
T ss_pred cCCCcceeeEeecCCCeEEEeecCCceeEeecCCcceeEEEeccccceeeEEEccCCCccceeeeccCCceeeeccCC--
Confidence 35567888999999999999888755555544332 2345678888874 2 444556668899999832
Q ss_pred CCCceeeeecCCCC-CcccceEeccCCCeEEEEEeeccccCCCCcceEEEEECCCCceeecccCCCccccccccceEEec
Q 002209 175 KLGQEIEIQGFPDG-AKLNFVTWSQDGKHLAFSIRIDAEDSSSSKLRVWVADVDTGKARPLFQSPDIYLNAIFDNFVWVN 253 (953)
Q Consensus 175 ~~~~~~~l~~~~~~-~~~~~~~wSPDG~~laf~~~~~~~~~~~~~~~l~~~d~~~g~~~~lt~~~~~~~~~~~~~~~wsp 253 (953)
.+.|..++.. ..+..++|.|+|++|+..+- ...-.+||+.+++...+-.+.... +.+++|.+
T Consensus 251 ----e~~l~~l~gH~~RVs~VafHPsG~~L~Tasf---------D~tWRlWD~~tk~ElL~QEGHs~~----v~~iaf~~ 313 (459)
T KOG0272|consen 251 ----ETPLQDLEGHLARVSRVAFHPSGKFLGTASF---------DSTWRLWDLETKSELLLQEGHSKG----VFSIAFQP 313 (459)
T ss_pred ----CcchhhhhcchhhheeeeecCCCceeeeccc---------ccchhhcccccchhhHhhcccccc----cceeEecC
Confidence 2333334322 48999999999999998652 333345566777654443333322 77999999
Q ss_pred CCeEEEEEecCCCCCCCCCCCCCCCCceeecCCCccccchhhhhhcCCcchhhhhhhhccceEEEEEc-CCceeEeCC-C
Q 002209 254 NSTLLVCTIPLLRGDPPKKPLVPLGPKMQSNEKRDIIQVRTFQDLLKDEYDEDLFDYYATTQLVLVSL-DGTVKEIGP-P 331 (953)
Q Consensus 254 Dg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~l~~~~~-~g~~~~l~~-~ 331 (953)
||..++... -| ..+. ++|+ +|.-..+.. .
T Consensus 314 DGSL~~tGG----------------------------------------lD-------~~~R--vWDlRtgr~im~L~gH 344 (459)
T KOG0272|consen 314 DGSLAATGG----------------------------------------LD-------SLGR--VWDLRTGRCIMFLAGH 344 (459)
T ss_pred CCceeeccC----------------------------------------cc-------chhh--eeecccCcEEEEeccc
Confidence 999887441 01 1123 3366 665444333 3
Q ss_pred -CcccccccCCCCcEEEEEEecCCccccccCCCCCcceEEEeccCceEEEeccCCCcccCCccccccccCccceeeccCC
Q 002209 332 -AVYTSLDPSPDEKYILISSIHRPYSFIVPCGRFPRQVGVWTTDGIFVRELCDLPLAEDIPIAFNSVRKGMRSINWRSDK 410 (953)
Q Consensus 332 -~~~~~~~~SpDG~~l~~~~~~~~~~~~~~~~~~~~~i~~~d~~g~~~~~l~~~~~~~~~p~~~~~~~~~~~~~~wspDg 410 (953)
..+.+++|||+|-.||..+.++ .+.+||+..... +...|. +..-+..+.|+|++
T Consensus 345 ~k~I~~V~fsPNGy~lATgs~Dn-------------t~kVWDLR~r~~--ly~ipA----------H~nlVS~Vk~~p~~ 399 (459)
T KOG0272|consen 345 IKEILSVAFSPNGYHLATGSSDN-------------TCKVWDLRMRSE--LYTIPA----------HSNLVSQVKYSPQE 399 (459)
T ss_pred ccceeeEeECCCceEEeecCCCC-------------cEEEeeeccccc--ceeccc----------ccchhhheEecccC
Confidence 7788999999999999887554 889999985432 332221 11334578899954
Q ss_pred CCceEEEEeccCCCcccccccCCeEEEEecCCCCCCCceEEeecccccCCeeeccCCceEEEEEecccCceEEEE
Q 002209 411 PSTLYWAETQDGGDAKVEVTPRDIIYTQQAEPVQGEGPEILHKLDLRYGGISWCDDSLALVYESWYKTRRTRTWV 485 (953)
Q Consensus 411 ~~i~~~~~~~~~~~~~~~~~~~~~l~~~d~~~~~g~~~~~l~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~l~~ 485 (953)
...+.. .+..+.+-+|.- .+....+.|.+++..+.++..|+||..|+..+.+.+. +||.
T Consensus 400 g~fL~T------------asyD~t~kiWs~--~~~~~~ksLaGHe~kV~s~Dis~d~~~i~t~s~DRT~--KLW~ 458 (459)
T KOG0272|consen 400 GYFLVT------------ASYDNTVKIWST--RTWSPLKSLAGHEGKVISLDISPDSQAIATSSFDRTI--KLWR 458 (459)
T ss_pred CeEEEE------------cccCcceeeecC--CCcccchhhcCCccceEEEEeccCCceEEEeccCcee--eecc
Confidence 433222 133445555652 2444556688889999999999999999998877654 6763
No 76
>PF07859 Abhydrolase_3: alpha/beta hydrolase fold A web page of Esterases and alpha/beta hydrolases.; InterPro: IPR013094 The alpha/beta hydrolase fold [] is common to a number of hydrolytic enzymes of widely differing phylogenetic origin and catalytic function. The core of each enzyme is an alpha/beta-sheet (rather than a barrel), containing 8 strands connected by helices []. The enzymes are believed to have diverged from a common ancestor, preserving the arrangement of the catalytic residues. All have a catalytic triad, the elements of which are borne on loops, which are the best conserved structural features of the fold. Esterase (EST) from Pseudomonas putida is a member of the alpha/beta hydrolase fold superfamily of enzymes []. In most of the family members the beta-strands are parallels, but some have an inversion of the first strands, which gives it an antiparallel orientation. The catalytic triad residues are presented on loops. One of these is the nucleophile elbow and is the most conserved feature of the fold. Some other members lack one or all of the catalytic residues. Some members are therefore inactive but others are involved in surface recognition. The ESTHER database [] gathers and annotates all the published information related to gene and protein sequences of this superfamily []. This entry represents the catalytic domain fold-3 of alpha/beta hydrolase. ; GO: 0016787 hydrolase activity, 0008152 metabolic process; PDB: 3D7R_B 2C7B_B 3ZWQ_B 2YH2_B 3BXP_A 3D3N_A 1LZK_A 1LZL_A 2O7V_A 2O7R_A ....
Probab=99.52 E-value=6.3e-14 Score=143.61 Aligned_cols=180 Identities=22% Similarity=0.224 Sum_probs=121.2
Q ss_pred EEEeCCCCCcCcCCCCcccCCCCCCCCccchHHHHHHH-cCcEEEEcCCCCCCCCCChhhhhhhHHHHHHHHHHHHHHHH
Q 002209 673 LFWSYPGEFKSKDAAGQVRGSPNEFPRIGSTSVLLWLA-RGFAILGGPTTPIIGEGDEEANDRFVEQLVACAEAAVEEVV 751 (953)
Q Consensus 673 vv~~hGg~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~-~G~~V~~~~~~~~~G~G~~~~~~~~~~~~~~D~~~~~~~l~ 751 (953)
||++|||.+..+.. .........+++ .|++|+.++|+- .++..++..++|+.++++|+.
T Consensus 1 v~~~HGGg~~~g~~------------~~~~~~~~~la~~~g~~v~~~~Yrl--------~p~~~~p~~~~D~~~a~~~l~ 60 (211)
T PF07859_consen 1 VVYIHGGGWVMGSK------------ESHWPFAARLAAERGFVVVSIDYRL--------APEAPFPAALEDVKAAYRWLL 60 (211)
T ss_dssp EEEE--STTTSCGT------------TTHHHHHHHHHHHHTSEEEEEE-----------TTTSSTTHHHHHHHHHHHHHH
T ss_pred CEEECCcccccCCh------------HHHHHHHHHHHhhccEEEEEeeccc--------cccccccccccccccceeeec
Confidence 78999986553321 111344556675 899999988852 233445789999999999998
Q ss_pred Hc---CCCCCCcEEEEEeChHHHHHHHHHHhCCC----cccEEEEcccCCCC-CCCCcCcc----cccchhh-----h-h
Q 002209 752 RR---GVAHPSKIAVGGHSYGAFMTANLLAHAPH----LFCCGIARSGAYNR-TLTPFGFQ----NEDRTLW-----E-A 813 (953)
Q Consensus 752 ~~---~~~d~~~i~l~G~S~GG~~a~~~a~~~p~----~~~a~v~~~~~~d~-~~~~~~~~----~~~~~~~-----~-~ 813 (953)
++ ..+|+++|+|+|+|.||.+++.++....+ .++++++++|..|. ......+. ......+ . .
T Consensus 61 ~~~~~~~~d~~~i~l~G~SAGg~la~~~~~~~~~~~~~~~~~~~~~~p~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 140 (211)
T PF07859_consen 61 KNADKLGIDPERIVLIGDSAGGHLALSLALRARDRGLPKPKGIILISPWTDLQDFDGPSYDDSNENKDDPFLPAPKIDWF 140 (211)
T ss_dssp HTHHHHTEEEEEEEEEEETHHHHHHHHHHHHHHHTTTCHESEEEEESCHSSTSTSSCHHHHHHHHHSTTSSSBHHHHHHH
T ss_pred cccccccccccceEEeecccccchhhhhhhhhhhhcccchhhhhcccccccchhcccccccccccccccccccccccccc
Confidence 87 34789999999999999999999975332 48999999998776 22111010 0000000 0 0
Q ss_pred HHHHH--------hcCcccccCCC--CCcEEEEEeCCCCCCCCchHHHHHHHHHHHhCCCcEEEEEeCCCCccC
Q 002209 814 TSTYV--------EMSPFMSANKL--KKPILLVHGEEDNNSGTLTMQSDRFFNALKGHGALCRLVILPFESHGY 877 (953)
Q Consensus 814 ~~~~~--------~~sp~~~~~~i--~~P~Li~~G~~D~~v~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~H~~ 877 (953)
...+. ..+|+.. ..+ -.|++|++|+.|.. ..++..++++|++.|++++++++++++|.|
T Consensus 141 ~~~~~~~~~~~~~~~sp~~~-~~~~~~Pp~~i~~g~~D~l----~~~~~~~~~~L~~~gv~v~~~~~~g~~H~f 209 (211)
T PF07859_consen 141 WKLYLPGSDRDDPLASPLNA-SDLKGLPPTLIIHGEDDVL----VDDSLRFAEKLKKAGVDVELHVYPGMPHGF 209 (211)
T ss_dssp HHHHHSTGGTTSTTTSGGGS-SCCTTCHEEEEEEETTSTT----HHHHHHHHHHHHHTT-EEEEEEETTEETTG
T ss_pred cccccccccccccccccccc-cccccCCCeeeeccccccc----hHHHHHHHHHHHHCCCCEEEEEECCCeEEe
Confidence 01111 2345544 123 35999999999965 678899999999999999999999999986
No 77
>PF02230 Abhydrolase_2: Phospholipase/Carboxylesterase; InterPro: IPR003140 This entry represents the alpha/beta hydrolase domain found in phospholipases [], carboxylesterases [] and thioesterases.; GO: 0016787 hydrolase activity; PDB: 3U0V_A 1AUR_A 1AUO_B 1FJ2_B 3CN9_A 3CN7_A.
Probab=99.51 E-value=9.8e-13 Score=134.68 Aligned_cols=129 Identities=27% Similarity=0.310 Sum_probs=92.4
Q ss_pred HHHHHHHHHHHHHcCCCCCCcEEEEEeChHHHHHHHHHHhCCCcccEEEEcccCCCCCCCCcCcccccchhhhhHHHHHh
Q 002209 740 VACAEAAVEEVVRRGVAHPSKIAVGGHSYGAFMTANLLAHAPHLFCCGIARSGAYNRTLTPFGFQNEDRTLWEATSTYVE 819 (953)
Q Consensus 740 ~~D~~~~~~~l~~~~~~d~~~i~l~G~S~GG~~a~~~a~~~p~~~~a~v~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~ 819 (953)
..-+.+.++...+.+ ++++||+++|+|+||.||+.++.++|..+.++|+.+|..-....
T Consensus 87 ~~~l~~li~~~~~~~-i~~~ri~l~GFSQGa~~al~~~l~~p~~~~gvv~lsG~~~~~~~-------------------- 145 (216)
T PF02230_consen 87 AERLDELIDEEVAYG-IDPSRIFLGGFSQGAAMALYLALRYPEPLAGVVALSGYLPPESE-------------------- 145 (216)
T ss_dssp HHHHHHHHHHHHHTT---GGGEEEEEETHHHHHHHHHHHCTSSTSSEEEEES---TTGCC--------------------
T ss_pred HHHHHHHHHHHHHcC-CChhheehhhhhhHHHHHHHHHHHcCcCcCEEEEeecccccccc--------------------
Confidence 334444455444444 89999999999999999999999999999999999986421100
Q ss_pred cCcccccCCC-CCcEEEEEeCCCCCCCCchHHHHHHHHHHHhCCCcEEEEEeCCCCccCCCcccHHHHHHHHHHHHHHhc
Q 002209 820 MSPFMSANKL-KKPILLVHGEEDNNSGTLTMQSDRFFNALKGHGALCRLVILPFESHGYAARESIMHVLWETDRWLQKYC 898 (953)
Q Consensus 820 ~sp~~~~~~i-~~P~Li~~G~~D~~v~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~H~~~~~~~~~~~~~~i~~fl~~~l 898 (953)
........ ++|+|++||..|.+|| ...+++.++.|++.+.++++..|++.||.+. ...++.+.+||++++
T Consensus 146 --~~~~~~~~~~~pi~~~hG~~D~vvp--~~~~~~~~~~L~~~~~~v~~~~~~g~gH~i~-----~~~~~~~~~~l~~~~ 216 (216)
T PF02230_consen 146 --LEDRPEALAKTPILIIHGDEDPVVP--FEWAEKTAEFLKAAGANVEFHEYPGGGHEIS-----PEELRDLREFLEKHI 216 (216)
T ss_dssp --CHCCHCCCCTS-EEEEEETT-SSST--HHHHHHHHHHHHCTT-GEEEEEETT-SSS-------HHHHHHHHHHHHHH-
T ss_pred --ccccccccCCCcEEEEecCCCCccc--HHHHHHHHHHHHhcCCCEEEEEcCCCCCCCC-----HHHHHHHHHHHhhhC
Confidence 00000111 6899999999999999 9999999999999999999999999999885 456788899998863
No 78
>PLN02511 hydrolase
Probab=99.51 E-value=4e-13 Score=149.79 Aligned_cols=236 Identities=14% Similarity=0.098 Sum_probs=144.8
Q ss_pred eEEEEEEcCCCcEEEEEEEcCCCCCCCCCCCccEEEEeCCCCCcCcCCCCcccCCCCCCCCccchHHHHHHHcCcEEEEc
Q 002209 639 KELIKYQRKDGVQLSATLYLPPGYDPSKDGPLPCLFWSYPGEFKSKDAAGQVRGSPNEFPRIGSTSVLLWLARGFAILGG 718 (953)
Q Consensus 639 ~~~~~~~~~dg~~~~~~l~~P~~~~~~~~~~~P~vv~~hGg~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~G~~V~~~ 718 (953)
.++..+...||..+...++.+..... ....|+||++||.... .. ..+.......+.++||.|+++
T Consensus 71 ~~re~l~~~DG~~~~ldw~~~~~~~~--~~~~p~vvllHG~~g~-----------s~--~~y~~~~~~~~~~~g~~vv~~ 135 (388)
T PLN02511 71 YRRECLRTPDGGAVALDWVSGDDRAL--PADAPVLILLPGLTGG-----------SD--DSYVRHMLLRARSKGWRVVVF 135 (388)
T ss_pred eeEEEEECCCCCEEEEEecCcccccC--CCCCCEEEEECCCCCC-----------CC--CHHHHHHHHHHHHCCCEEEEE
Confidence 34445667788888765554321111 1236899999995311 11 111112344567899999995
Q ss_pred CCCCCCCCCChhhh--hhhHHHHHHHHHHHHHHHHHcCCCCCCcEEEEEeChHHHHHHHHHHhCCCc--ccEEEEcccCC
Q 002209 719 PTTPIIGEGDEEAN--DRFVEQLVACAEAAVEEVVRRGVAHPSKIAVGGHSYGAFMTANLLAHAPHL--FCCGIARSGAY 794 (953)
Q Consensus 719 ~~~~~~G~G~~~~~--~~~~~~~~~D~~~~~~~l~~~~~~d~~~i~l~G~S~GG~~a~~~a~~~p~~--~~a~v~~~~~~ 794 (953)
| .+|+|.+... ..+.....+|+.++++++..+. ...++.++||||||.+++.++.++|+. +++++++++..
T Consensus 136 d---~rG~G~s~~~~~~~~~~~~~~Dl~~~i~~l~~~~--~~~~~~lvG~SlGg~i~~~yl~~~~~~~~v~~~v~is~p~ 210 (388)
T PLN02511 136 N---SRGCADSPVTTPQFYSASFTGDLRQVVDHVAGRY--PSANLYAAGWSLGANILVNYLGEEGENCPLSGAVSLCNPF 210 (388)
T ss_pred e---cCCCCCCCCCCcCEEcCCchHHHHHHHHHHHHHC--CCCCEEEEEechhHHHHHHHHHhcCCCCCceEEEEECCCc
Confidence 4 4677766431 2233456789999999998763 235899999999999999999999876 78888777654
Q ss_pred CCCC------CCc--C----cc---------------------c-----ccchhh-------------hh-HHHHHhcCc
Q 002209 795 NRTL------TPF--G----FQ---------------------N-----EDRTLW-------------EA-TSTYVEMSP 822 (953)
Q Consensus 795 d~~~------~~~--~----~~---------------------~-----~~~~~~-------------~~-~~~~~~~sp 822 (953)
+... ..+ . +. . .....+ .. .+.|...++
T Consensus 211 ~l~~~~~~~~~~~~~~y~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fd~~~t~~~~gf~~~~~yy~~~s~ 290 (388)
T PLN02511 211 DLVIADEDFHKGFNNVYDKALAKALRKIFAKHALLFEGLGGEYNIPLVANAKTVRDFDDGLTRVSFGFKSVDAYYSNSSS 290 (388)
T ss_pred CHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHhhCCCccCHHHHHhCCCHHHHHHhhhhhcCCCCCHHHHHHHcCc
Confidence 4210 000 0 00 0 000000 00 112334556
Q ss_pred ccccCCCCCcEEEEEeCCCCCCCCchHHHHHHHHHHHhCCCcEEEEEeCCCCccCCCcccHH------HHHHHHHHHHHH
Q 002209 823 FMSANKLKKPILLVHGEEDNNSGTLTMQSDRFFNALKGHGALCRLVILPFESHGYAARESIM------HVLWETDRWLQK 896 (953)
Q Consensus 823 ~~~~~~i~~P~Li~~G~~D~~v~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~H~~~~~~~~~------~~~~~i~~fl~~ 896 (953)
...+.+|++|+|+++|++|.++| ...... . +......+++++++++||... .+... -..+.+.+||+.
T Consensus 291 ~~~L~~I~vPtLiI~g~dDpi~p--~~~~~~--~-~~~~~p~~~l~~~~~gGH~~~-~E~p~~~~~~~w~~~~i~~Fl~~ 364 (388)
T PLN02511 291 SDSIKHVRVPLLCIQAANDPIAP--ARGIPR--E-DIKANPNCLLIVTPSGGHLGW-VAGPEAPFGAPWTDPVVMEFLEA 364 (388)
T ss_pred hhhhccCCCCeEEEEcCCCCcCC--cccCcH--h-HHhcCCCEEEEECCCcceecc-ccCCCCCCCCccHHHHHHHHHHH
Confidence 67788899999999999999987 543311 1 112234578999999999743 22221 245778899988
Q ss_pred hccC
Q 002209 897 YCVS 900 (953)
Q Consensus 897 ~l~~ 900 (953)
....
T Consensus 365 ~~~~ 368 (388)
T PLN02511 365 LEEG 368 (388)
T ss_pred HHHh
Confidence 7643
No 79
>TIGR03343 biphenyl_bphD 2-hydroxy-6-oxo-6-phenylhexa-2,4-dienoate hydrolase. Members of this family are 2-hydroxy-6-oxo-6-phenylhexa-2,4-dienoate hydrolase, or HOPD hydrolase, the BphD protein of biphenyl degradation. BphD acts on the product of ring meta-cleavage by BphC. Many species carrying bphC and bphD are capable of degrading polychlorinated biphenyls as well as biphenyl itself.
Probab=99.50 E-value=3.8e-13 Score=144.86 Aligned_cols=174 Identities=13% Similarity=0.101 Sum_probs=113.7
Q ss_pred HHHHHcCcEEEEcCCCCCCCCCChhhhh---hhHHHHHHHHHHHHHHHHHcCCCCCCcEEEEEeChHHHHHHHHHHhCCC
Q 002209 706 LLWLARGFAILGGPTTPIIGEGDEEAND---RFVEQLVACAEAAVEEVVRRGVAHPSKIAVGGHSYGAFMTANLLAHAPH 782 (953)
Q Consensus 706 ~~la~~G~~V~~~~~~~~~G~G~~~~~~---~~~~~~~~D~~~~~~~l~~~~~~d~~~i~l~G~S~GG~~a~~~a~~~p~ 782 (953)
..+++.||.|++ ++.+|+|.+.... .......+|+.++++.+ +.+++.++||||||.+++.++.++|+
T Consensus 54 ~~l~~~~~~vi~---~D~~G~G~S~~~~~~~~~~~~~~~~l~~~l~~l------~~~~~~lvG~S~Gg~ia~~~a~~~p~ 124 (282)
T TIGR03343 54 GPFVDAGYRVIL---KDSPGFNKSDAVVMDEQRGLVNARAVKGLMDAL------DIEKAHLVGNSMGGATALNFALEYPD 124 (282)
T ss_pred HHHHhCCCEEEE---ECCCCCCCCCCCcCcccccchhHHHHHHHHHHc------CCCCeeEEEECchHHHHHHHHHhChH
Confidence 456778999999 4556788875431 11112345555544443 45699999999999999999999999
Q ss_pred cccEEEEcccCCCCC--CCCcC---------------------------cccc--cc----hhhh----hHH---HHHh-
Q 002209 783 LFCCGIARSGAYNRT--LTPFG---------------------------FQNE--DR----TLWE----ATS---TYVE- 819 (953)
Q Consensus 783 ~~~a~v~~~~~~d~~--~~~~~---------------------------~~~~--~~----~~~~----~~~---~~~~- 819 (953)
+++++|++++..... ..... +... .. ..|. .+. .+..
T Consensus 125 ~v~~lvl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 204 (282)
T TIGR03343 125 RIGKLILMGPGGLGPSLFAPMPMEGIKLLFKLYAEPSYETLKQMLNVFLFDQSLITEELLQGRWENIQRQPEHLKNFLIS 204 (282)
T ss_pred hhceEEEECCCCCCccccccCchHHHHHHHHHhcCCCHHHHHHHHhhCccCcccCcHHHHHhHHHHhhcCHHHHHHHHHh
Confidence 999999988642110 00000 0000 00 0010 000 1110
Q ss_pred --------cCcccccCCCCCcEEEEEeCCCCCCCCchHHHHHHHHHHHhCCCcEEEEEeCCCCccCCCcccHHHHHHHHH
Q 002209 820 --------MSPFMSANKLKKPILLVHGEEDNNSGTLTMQSDRFFNALKGHGALCRLVILPFESHGYAARESIMHVLWETD 891 (953)
Q Consensus 820 --------~sp~~~~~~i~~P~Li~~G~~D~~v~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~H~~~~~~~~~~~~~~i~ 891 (953)
......+.++++|+|+++|++|..++ ++.+.++++.++ .+++++++++||.. ..+....+.+.+.
T Consensus 205 ~~~~~~~~~~~~~~l~~i~~Pvlli~G~~D~~v~--~~~~~~~~~~~~----~~~~~~i~~agH~~-~~e~p~~~~~~i~ 277 (282)
T TIGR03343 205 SQKAPLSTWDVTARLGEIKAKTLVTWGRDDRFVP--LDHGLKLLWNMP----DAQLHVFSRCGHWA-QWEHADAFNRLVI 277 (282)
T ss_pred ccccccccchHHHHHhhCCCCEEEEEccCCCcCC--chhHHHHHHhCC----CCEEEEeCCCCcCC-cccCHHHHHHHHH
Confidence 01112356789999999999999998 888888877664 36889999999987 4677788888898
Q ss_pred HHHH
Q 002209 892 RWLQ 895 (953)
Q Consensus 892 ~fl~ 895 (953)
+||.
T Consensus 278 ~fl~ 281 (282)
T TIGR03343 278 DFLR 281 (282)
T ss_pred HHhh
Confidence 9875
No 80
>TIGR03866 PQQ_ABC_repeats PQQ-dependent catabolism-associated beta-propeller protein. Members of this protein family consist of seven repeats each of the YVTN family beta-propeller repeat (see TIGR02276). Members occur invariably as part of a transport operon that is associated with PQQ-dependent catabolism of alcohols such as phenylethanol.
Probab=99.50 E-value=3.6e-11 Score=130.67 Aligned_cols=268 Identities=14% Similarity=0.066 Sum_probs=157.2
Q ss_pred eceEEEEccCCCCCCceeeeecCCCCCcccceEeccCCCeEEEEEeeccccCCCCcceEEEEECCCCceeecccCCCccc
Q 002209 163 TGIGIHQLFPDGKLGQEIEIQGFPDGAKLNFVTWSQDGKHLAFSIRIDAEDSSSSKLRVWVADVDTGKARPLFQSPDIYL 242 (953)
Q Consensus 163 ~~i~i~~~~~~g~~~~~~~l~~~~~~~~~~~~~wSPDG~~laf~~~~~~~~~~~~~~~l~~~d~~~g~~~~lt~~~~~~~ 242 (953)
+.|++||+.+ + .....+. .+..+....|+|||+.++.+.. ....|+++|+.+++..+.......
T Consensus 11 ~~v~~~d~~t-~--~~~~~~~---~~~~~~~l~~~~dg~~l~~~~~--------~~~~v~~~d~~~~~~~~~~~~~~~-- 74 (300)
T TIGR03866 11 NTISVIDTAT-L--EVTRTFP---VGQRPRGITLSKDGKLLYVCAS--------DSDTIQVIDLATGEVIGTLPSGPD-- 74 (300)
T ss_pred CEEEEEECCC-C--ceEEEEE---CCCCCCceEECCCCCEEEEEEC--------CCCeEEEEECCCCcEEEeccCCCC--
Confidence 3678999843 2 1122222 2234667999999998766432 245799999988876543222221
Q ss_pred cccccceEEecCCeEEEEEecCCCCCCCCCCCCCCCCceeecCCCccccchhhhhhcCCcchhhhhhhhccceEEEEEc-
Q 002209 243 NAIFDNFVWVNNSTLLVCTIPLLRGDPPKKPLVPLGPKMQSNEKRDIIQVRTFQDLLKDEYDEDLFDYYATTQLVLVSL- 321 (953)
Q Consensus 243 ~~~~~~~~wspDg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~l~~~~~- 321 (953)
...+.|+|||+.++++. . ....|+++|+
T Consensus 75 ---~~~~~~~~~g~~l~~~~---------------------------------------~---------~~~~l~~~d~~ 103 (300)
T TIGR03866 75 ---PELFALHPNGKILYIAN---------------------------------------E---------DDNLVTVIDIE 103 (300)
T ss_pred ---ccEEEECCCCCEEEEEc---------------------------------------C---------CCCeEEEEECC
Confidence 34688999999887651 0 1246778888
Q ss_pred CCce-eEeCCCCcccccccCCCCcEEEEEEecCCccccccCCCCCcceEEEeccCceEEEeccCCCcccCCccccccccC
Q 002209 322 DGTV-KEIGPPAVYTSLDPSPDEKYILISSIHRPYSFIVPCGRFPRQVGVWTTDGIFVRELCDLPLAEDIPIAFNSVRKG 400 (953)
Q Consensus 322 ~g~~-~~l~~~~~~~~~~~SpDG~~l~~~~~~~~~~~~~~~~~~~~~i~~~d~~g~~~~~l~~~~~~~~~p~~~~~~~~~ 400 (953)
+++. ..+........++|+|||+.+++..... ..+..||..++......... ..
T Consensus 104 ~~~~~~~~~~~~~~~~~~~~~dg~~l~~~~~~~------------~~~~~~d~~~~~~~~~~~~~-------------~~ 158 (300)
T TIGR03866 104 TRKVLAEIPVGVEPEGMAVSPDGKIVVNTSETT------------NMAHFIDTKTYEIVDNVLVD-------------QR 158 (300)
T ss_pred CCeEEeEeeCCCCcceEEECCCCCEEEEEecCC------------CeEEEEeCCCCeEEEEEEcC-------------CC
Confidence 5543 2332223456789999999998876321 14566787654432211110 12
Q ss_pred ccceeeccCCCCceEEEEeccCCCcccccccCCeEEEEecCCCCCCC-ceEEeec-------ccccCCeeeccCCceEEE
Q 002209 401 MRSINWRSDKPSTLYWAETQDGGDAKVEVTPRDIIYTQQAEPVQGEG-PEILHKL-------DLRYGGISWCDDSLALVY 472 (953)
Q Consensus 401 ~~~~~wspDg~~i~~~~~~~~~~~~~~~~~~~~~l~~~d~~~~~g~~-~~~l~~~-------~~~~~~~~~SpDg~~l~~ 472 (953)
+..++|+|||+.+++.. ...+.+++||+ .+++ ...+... ......+.|+|||+.++.
T Consensus 159 ~~~~~~s~dg~~l~~~~------------~~~~~v~i~d~---~~~~~~~~~~~~~~~~~~~~~~~~~i~~s~dg~~~~~ 223 (300)
T TIGR03866 159 PRFAEFTADGKELWVSS------------EIGGTVSVIDV---ATRKVIKKITFEIPGVHPEAVQPVGIKLTKDGKTAFV 223 (300)
T ss_pred ccEEEECCCCCEEEEEc------------CCCCEEEEEEc---CcceeeeeeeecccccccccCCccceEECCCCCEEEE
Confidence 34688999998765541 12457888886 3333 2333211 111235789999998766
Q ss_pred EEecccCceEEEEEcCCCCCCCcEEeecCCCccccCCCCCCCeEeccCCCEEEEEeeeccCCCcEEEEecCCCCCCCCCC
Q 002209 473 ESWYKTRRTRTWVISPGSKDVAPRILFDRSSEDVYSDPGSPMMRRTSTGTYVIAKIKKENDEGTYILLNGNGATPEGNIP 552 (953)
Q Consensus 473 ~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~SpDG~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 552 (953)
....+ .++.++|..++ +....... ...+.. +.|+|||++|+.... ...
T Consensus 224 ~~~~~---~~i~v~d~~~~--~~~~~~~~-~~~~~~------~~~~~~g~~l~~~~~--------------------~~~ 271 (300)
T TIGR03866 224 ALGPA---NRVAVVDAKTY--EVLDYLLV-GQRVWQ------LAFTPDEKYLLTTNG--------------------VSN 271 (300)
T ss_pred EcCCC---CeEEEEECCCC--cEEEEEEe-CCCcce------EEECCCCCEEEEEcC--------------------CCC
Confidence 54322 25778887764 22221111 111222 789999998876531 112
Q ss_pred eEEEEECCCCceEEEec
Q 002209 553 FLDLFDINTGSKERIWE 569 (953)
Q Consensus 553 ~L~~~d~~~~~~~~l~~ 569 (953)
.|.+||+.+++...-..
T Consensus 272 ~i~v~d~~~~~~~~~~~ 288 (300)
T TIGR03866 272 DVSVIDVAALKVIKSIK 288 (300)
T ss_pred eEEEEECCCCcEEEEEE
Confidence 49999999988644433
No 81
>PRK00870 haloalkane dehalogenase; Provisional
Probab=99.50 E-value=7.8e-13 Score=143.68 Aligned_cols=224 Identities=15% Similarity=0.175 Sum_probs=132.6
Q ss_pred eEEEEEEcCCCcEEEEEEEcCCCCCCCCCCCccEEEEeCCCCCcCcCCCCcccCCCCCCCCccchHHHHHHHcCcEEEEc
Q 002209 639 KELIKYQRKDGVQLSATLYLPPGYDPSKDGPLPCLFWSYPGEFKSKDAAGQVRGSPNEFPRIGSTSVLLWLARGFAILGG 718 (953)
Q Consensus 639 ~~~~~~~~~dg~~~~~~l~~P~~~~~~~~~~~P~vv~~hGg~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~G~~V~~~ 718 (953)
...+++...+|..+... |...+ ++ ..|.||++||.+... ..| ......|.++||.|++
T Consensus 21 ~~~~~~~~~~~~~~~i~-y~~~G-~~----~~~~lvliHG~~~~~-----------~~w----~~~~~~L~~~gy~vi~- 78 (302)
T PRK00870 21 PHYVDVDDGDGGPLRMH-YVDEG-PA----DGPPVLLLHGEPSWS-----------YLY----RKMIPILAAAGHRVIA- 78 (302)
T ss_pred ceeEeecCCCCceEEEE-EEecC-CC----CCCEEEEECCCCCch-----------hhH----HHHHHHHHhCCCEEEE-
Confidence 45566665566544322 22222 11 146799999953110 011 1234456678999999
Q ss_pred CCCCCCCCCChhhhh----hhHHHHHHHHHHHHHHHHHcCCCCCCcEEEEEeChHHHHHHHHHHhCCCcccEEEEcccCC
Q 002209 719 PTTPIIGEGDEEAND----RFVEQLVACAEAAVEEVVRRGVAHPSKIAVGGHSYGAFMTANLLAHAPHLFCCGIARSGAY 794 (953)
Q Consensus 719 ~~~~~~G~G~~~~~~----~~~~~~~~D~~~~~~~l~~~~~~d~~~i~l~G~S~GG~~a~~~a~~~p~~~~a~v~~~~~~ 794 (953)
.+.+|+|.+.... .......+|+.+.++.+ +.+++.|+||||||.+++.++..+|++++++|++++..
T Consensus 79 --~Dl~G~G~S~~~~~~~~~~~~~~a~~l~~~l~~l------~~~~v~lvGhS~Gg~ia~~~a~~~p~~v~~lvl~~~~~ 150 (302)
T PRK00870 79 --PDLIGFGRSDKPTRREDYTYARHVEWMRSWFEQL------DLTDVTLVCQDWGGLIGLRLAAEHPDRFARLVVANTGL 150 (302)
T ss_pred --ECCCCCCCCCCCCCcccCCHHHHHHHHHHHHHHc------CCCCEEEEEEChHHHHHHHHHHhChhheeEEEEeCCCC
Confidence 5557888774321 12345555555554432 34589999999999999999999999999999887532
Q ss_pred CCCCC--C-----cC-cccc------------cchhh---hhHHHHH----------------hc---Cc----------
Q 002209 795 NRTLT--P-----FG-FQNE------------DRTLW---EATSTYV----------------EM---SP---------- 822 (953)
Q Consensus 795 d~~~~--~-----~~-~~~~------------~~~~~---~~~~~~~----------------~~---sp---------- 822 (953)
..... . +. +... ....+ +....|. .. .+
T Consensus 151 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 230 (302)
T PRK00870 151 PTGDGPMPDAFWAWRAFSQYSPVLPVGRLVNGGTVRDLSDAVRAAYDAPFPDESYKAGARAFPLLVPTSPDDPAVAANRA 230 (302)
T ss_pred CCccccchHHHhhhhcccccCchhhHHHHhhccccccCCHHHHHHhhcccCChhhhcchhhhhhcCCCCCCCcchHHHHH
Confidence 10000 0 00 0000 00000 0000010 00 00
Q ss_pred -ccccCCCCCcEEEEEeCCCCCCCCchHHHHHHHHHHHhCCCcEEEEEeCCCCccCCCcccHHHHHHHHHHHHHHh
Q 002209 823 -FMSANKLKKPILLVHGEEDNNSGTLTMQSDRFFNALKGHGALCRLVILPFESHGYAARESIMHVLWETDRWLQKY 897 (953)
Q Consensus 823 -~~~~~~i~~P~Li~~G~~D~~v~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~H~~~~~~~~~~~~~~i~~fl~~~ 897 (953)
...+.++++|+|+++|++|..+| ... .++.+.+... ..+++++++++||.. ..+..+.+.+.+.+||+++
T Consensus 231 ~~~~l~~i~~P~lii~G~~D~~~~--~~~-~~~~~~~~~~-~~~~~~~i~~~gH~~-~~e~p~~~~~~l~~fl~~~ 301 (302)
T PRK00870 231 AWAVLERWDKPFLTAFSDSDPITG--GGD-AILQKRIPGA-AGQPHPTIKGAGHFL-QEDSGEELAEAVLEFIRAT 301 (302)
T ss_pred HHHhhhcCCCceEEEecCCCCccc--Cch-HHHHhhcccc-cccceeeecCCCccc-hhhChHHHHHHHHHHHhcC
Confidence 01246788999999999999987 654 6666655432 113477899999987 4677788889999998764
No 82
>PF10503 Esterase_phd: Esterase PHB depolymerase
Probab=99.50 E-value=3.1e-13 Score=134.87 Aligned_cols=187 Identities=21% Similarity=0.218 Sum_probs=113.1
Q ss_pred EEEEEEcCCCCCCCCCCCccEEEEeCCCCCcCcCCCCcccCCCCCCCCccchHHHHHH-HcCcEEEEcCCCCC--CCCCC
Q 002209 652 LSATLYLPPGYDPSKDGPLPCLFWSYPGEFKSKDAAGQVRGSPNEFPRIGSTSVLLWL-ARGFAILGGPTTPI--IGEGD 728 (953)
Q Consensus 652 ~~~~l~~P~~~~~~~~~~~P~vv~~hGg~~~~~~~~~~~~~~~~~~~~~~~~~~~~la-~~G~~V~~~~~~~~--~G~G~ 728 (953)
|...||+|++... .+.|+||++||..... ..|.. ... ...++ ++||+|+.|..... .....
T Consensus 1 l~Y~lYvP~~~~~---~~~PLVv~LHG~~~~a-----------~~~~~-~s~-~~~lAd~~GfivvyP~~~~~~~~~~cw 64 (220)
T PF10503_consen 1 LSYRLYVPPGAPR---GPVPLVVVLHGCGQSA-----------EDFAA-GSG-WNALADREGFIVVYPEQSRRANPQGCW 64 (220)
T ss_pred CcEEEecCCCCCC---CCCCEEEEeCCCCCCH-----------HHHHh-hcC-HHHHhhcCCeEEEcccccccCCCCCcc
Confidence 3568999997532 3589999999963221 11111 001 12345 47999998664211 01111
Q ss_pred hhhh--hhhHHHHHHHHHHHHHHHHHcCCCCCCcEEEEEeChHHHHHHHHHHhCCCcccEEEEcccCCCCCCCC----cC
Q 002209 729 EEAN--DRFVEQLVACAEAAVEEVVRRGVAHPSKIAVGGHSYGAFMTANLLAHAPHLFCCGIARSGAYNRTLTP----FG 802 (953)
Q Consensus 729 ~~~~--~~~~~~~~~D~~~~~~~l~~~~~~d~~~i~l~G~S~GG~~a~~~a~~~p~~~~a~v~~~~~~d~~~~~----~~ 802 (953)
.+.. ......+...+.+.++++.++..+|++||+++|+|.||+|+..+++.+|++|.|+..++|..-..... ..
T Consensus 65 ~w~~~~~~~g~~d~~~i~~lv~~v~~~~~iD~~RVyv~G~S~Gg~ma~~la~~~pd~faa~a~~sG~~~~~a~~~~~a~~ 144 (220)
T PF10503_consen 65 NWFSDDQQRGGGDVAFIAALVDYVAARYNIDPSRVYVTGLSNGGMMANVLACAYPDLFAAVAVVSGVPYGCAASGASALS 144 (220)
T ss_pred cccccccccCccchhhHHHHHHhHhhhcccCCCceeeEEECHHHHHHHHHHHhCCccceEEEeecccccccccCcccHHH
Confidence 1111 11123345567788899999999999999999999999999999999999999999988763211100 00
Q ss_pred -ccc-ccchhhhhHHHHHhcCcccccCCCCCcEEEEEeCCCCCCCCchHHHHHHHHHHHhC
Q 002209 803 -FQN-EDRTLWEATSTYVEMSPFMSANKLKKPILLVHGEEDNNSGTLTMQSDRFFNALKGH 861 (953)
Q Consensus 803 -~~~-~~~~~~~~~~~~~~~sp~~~~~~i~~P~Li~~G~~D~~v~~~~~~~~~~~~~l~~~ 861 (953)
+.. ....+........... ..-..|++|+||+.|.+|. +.++.++.+.+...
T Consensus 145 ~m~~g~~~~p~~~~~a~~~~g-----~~~~~P~~v~hG~~D~tV~--~~n~~~~~~q~~~~ 198 (220)
T PF10503_consen 145 AMRSGPRPAPAAAWGARSDAG-----AYPGYPRIVFHGTADTTVN--PQNADQLVAQWLNV 198 (220)
T ss_pred HhhCCCCCChHHHHHhhhhcc-----CCCCCCEEEEecCCCCccC--cchHHHHHHHHHHc
Confidence 000 0000000001111100 0112589999999999998 88888888777643
No 83
>KOG0271 consensus Notchless-like WD40 repeat-containing protein [Function unknown]
Probab=99.49 E-value=7.9e-13 Score=133.77 Aligned_cols=284 Identities=14% Similarity=0.137 Sum_probs=154.3
Q ss_pred CCCCceecCCCCEEEEEecCCCCCccccccccceeceEEecCCCCCCcceeeeeceEEEEccCCCCCCceeeeecCCCCC
Q 002209 110 PLPALSFSPQRDKILFLKRRALPPLEELARPEEKLAGLRIDGKCNTRSRMSFYTGIGIHQLFPDGKLGQEIEIQGFPDGA 189 (953)
Q Consensus 110 ~~~~~~~SPDG~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~i~~~~~~g~~~~~~~l~~~~~~~ 189 (953)
.+..++|||||++||..+.+ +.|.+||-++++.. .+.|+++. .
T Consensus 159 WVlcvawsPDgk~iASG~~d---------------------------------g~I~lwdpktg~~~--g~~l~gH~--K 201 (480)
T KOG0271|consen 159 WVLCVAWSPDGKKIASGSKD---------------------------------GSIRLWDPKTGQQI--GRALRGHK--K 201 (480)
T ss_pred EEEEEEECCCcchhhccccC---------------------------------CeEEEecCCCCCcc--cccccCcc--c
Confidence 46688999999999998875 47899997664432 23444433 4
Q ss_pred cccceEecc-----CCCeEEEEEeeccccCCCCcceEEEEECCCCceeecccCCCccccccccceEEecCCeEEEEEecC
Q 002209 190 KLNFVTWSQ-----DGKHLAFSIRIDAEDSSSSKLRVWVADVDTGKARPLFQSPDIYLNAIFDNFVWVNNSTLLVCTIPL 264 (953)
Q Consensus 190 ~~~~~~wSP-----DG~~laf~~~~~~~~~~~~~~~l~~~d~~~g~~~~lt~~~~~~~~~~~~~~~wspDg~~l~~~~~~ 264 (953)
.+...+|-| ..++||..+ +..++.++|+..|+........... +.-+.|--+| +||..+.+
T Consensus 202 ~It~Lawep~hl~p~~r~las~s---------kDg~vrIWd~~~~~~~~~lsgHT~~----VTCvrwGG~g-liySgS~D 267 (480)
T KOG0271|consen 202 WITALAWEPLHLVPPCRRLASSS---------KDGSVRIWDTKLGTCVRTLSGHTAS----VTCVRWGGEG-LIYSGSQD 267 (480)
T ss_pred ceeEEeecccccCCCccceeccc---------CCCCEEEEEccCceEEEEeccCccc----eEEEEEcCCc-eEEecCCC
Confidence 788888864 677776643 4667788888888766554433322 6677786444 44433211
Q ss_pred CCCCCCCCCCCCCCCceeecCCCccccchhhhhhcCCcchhhhhhhhccceEEEEEc-------CCc-------eeEeCC
Q 002209 265 LRGDPPKKPLVPLGPKMQSNEKRDIIQVRTFQDLLKDEYDEDLFDYYATTQLVLVSL-------DGT-------VKEIGP 330 (953)
Q Consensus 265 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~l~~~~~-------~g~-------~~~l~~ 330 (953)
... +++.+..+..+ | .++.. ..-|-.+++ +|. .....+
T Consensus 268 rtI------------kvw~a~dG~~~--r----~lkGH----------ahwvN~lalsTdy~LRtgaf~~t~~~~~~~se 319 (480)
T KOG0271|consen 268 RTI------------KVWRALDGKLC--R----ELKGH----------AHWVNHLALSTDYVLRTGAFDHTGRKPKSFSE 319 (480)
T ss_pred ceE------------EEEEccchhHH--H----hhccc----------chheeeeeccchhhhhccccccccccCCChHH
Confidence 111 12211110000 0 00000 000111111 110 000000
Q ss_pred C-----CcccccccCCCCcEEEEEEecCCccccccCCCCCcceEEEeccC--ceEEEeccCCCcccCCccccccccCccc
Q 002209 331 P-----AVYTSLDPSPDEKYILISSIHRPYSFIVPCGRFPRQVGVWTTDG--IFVRELCDLPLAEDIPIAFNSVRKGMRS 403 (953)
Q Consensus 331 ~-----~~~~~~~~SpDG~~l~~~~~~~~~~~~~~~~~~~~~i~~~d~~g--~~~~~l~~~~~~~~~p~~~~~~~~~~~~ 403 (953)
. ..+ ....--.|++|+..+.+ .++++|+... +-+.+++.+. .-+..
T Consensus 320 ~~~~Al~rY-~~~~~~~~erlVSgsDd-------------~tlflW~p~~~kkpi~rmtgHq-------------~lVn~ 372 (480)
T KOG0271|consen 320 EQKKALERY-EAVLKDSGERLVSGSDD-------------FTLFLWNPFKSKKPITRMTGHQ-------------ALVNH 372 (480)
T ss_pred HHHHHHHHH-HHhhccCcceeEEecCC-------------ceEEEecccccccchhhhhchh-------------hheee
Confidence 0 000 01111234556655533 3899997752 2233444432 23457
Q ss_pred eeeccCCCCceEEEEeccCCCcccccccCCeEEEEecCCCCCCCceEEeecccccCCeeeccCCceEEEEEecccCceEE
Q 002209 404 INWRSDKPSTLYWAETQDGGDAKVEVTPRDIIYTQQAEPVQGEGPEILHKLDLRYGGISWCDDSLALVYESWYKTRRTRT 483 (953)
Q Consensus 404 ~~wspDg~~i~~~~~~~~~~~~~~~~~~~~~l~~~d~~~~~g~~~~~l~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~l 483 (953)
+.|||||+.|+-. +-...|.+|+- .+|.-...+-.+-..+..++||.|.|.|+..+.+.+- ++
T Consensus 373 V~fSPd~r~IASa-------------SFDkSVkLW~g--~tGk~lasfRGHv~~VYqvawsaDsRLlVS~SkDsTL--Kv 435 (480)
T KOG0271|consen 373 VSFSPDGRYIASA-------------SFDKSVKLWDG--RTGKFLASFRGHVAAVYQVAWSADSRLLVSGSKDSTL--KV 435 (480)
T ss_pred EEECCCccEEEEe-------------ecccceeeeeC--CCcchhhhhhhccceeEEEEeccCccEEEEcCCCceE--EE
Confidence 8999999987765 44556778874 3343333344555667889999999988877655432 55
Q ss_pred EEEcCCCCCCCcEEeecC--CCccccCCCCCCCeEeccCCCEEEEEe
Q 002209 484 WVISPGSKDVAPRILFDR--SSEDVYSDPGSPMMRRTSTGTYVIAKI 528 (953)
Q Consensus 484 ~~~d~~~~~~~~~~~~~~--~~~~~~~~~~~p~~~~SpDG~~l~~~~ 528 (953)
|.+. +. +...+. ....+|. +-|||||+.++...
T Consensus 436 w~V~--tk----Kl~~DLpGh~DEVf~------vDwspDG~rV~sgg 470 (480)
T KOG0271|consen 436 WDVR--TK----KLKQDLPGHADEVFA------VDWSPDGQRVASGG 470 (480)
T ss_pred EEee--ee----eecccCCCCCceEEE------EEecCCCceeecCC
Confidence 6554 31 222222 3344555 78999999987664
No 84
>TIGR03056 bchO_mg_che_rel putative magnesium chelatase accessory protein. Members of this family belong to the alpha/beta fold family hydrolases (PFAM model pfam00561). Members are found in bacterial genomes if and only if they encoded for anoxygenic photosynthetic systems similar to that of Rhodobacter capsulatus and other alpha-Proteobacteria. Members often are encoded in the same operon as subunits of the protoporphyrin IX magnesium chelatase, and were once designated BchO. No literature supports a role as an actual subunit of magnesium chelatase, but an accessory role is possible, as suggested by placement by its probable hydrolase activity.
Probab=99.48 E-value=1.8e-12 Score=139.28 Aligned_cols=194 Identities=19% Similarity=0.147 Sum_probs=120.3
Q ss_pred ccEEEEeCCCCCcCcCCCCcccCCCCCCCCccchHHHHHHHcCcEEEEcCCCCCCCCCChhhhh---hhHHHHHHHHHHH
Q 002209 670 LPCLFWSYPGEFKSKDAAGQVRGSPNEFPRIGSTSVLLWLARGFAILGGPTTPIIGEGDEEAND---RFVEQLVACAEAA 746 (953)
Q Consensus 670 ~P~vv~~hGg~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~G~~V~~~~~~~~~G~G~~~~~~---~~~~~~~~D~~~~ 746 (953)
.|+||++||.+.. ...| ...... ++++|.|+. .+..|+|.+.... ........|+.++
T Consensus 28 ~~~vv~~hG~~~~-----------~~~~----~~~~~~-l~~~~~vi~---~D~~G~G~S~~~~~~~~~~~~~~~~l~~~ 88 (278)
T TIGR03056 28 GPLLLLLHGTGAS-----------THSW----RDLMPP-LARSFRVVA---PDLPGHGFTRAPFRFRFTLPSMAEDLSAL 88 (278)
T ss_pred CCeEEEEcCCCCC-----------HHHH----HHHHHH-HhhCcEEEe---ecCCCCCCCCCccccCCCHHHHHHHHHHH
Confidence 4789999995311 0111 122333 456799999 4556778764432 2345556666655
Q ss_pred HHHHHHcCCCCCCcEEEEEeChHHHHHHHHHHhCCCcccEEEEcccCCCCCCC------C----------cC-------c
Q 002209 747 VEEVVRRGVAHPSKIAVGGHSYGAFMTANLLAHAPHLFCCGIARSGAYNRTLT------P----------FG-------F 803 (953)
Q Consensus 747 ~~~l~~~~~~d~~~i~l~G~S~GG~~a~~~a~~~p~~~~a~v~~~~~~d~~~~------~----------~~-------~ 803 (953)
++.+ +.+++.|+||||||.+++.++.+.|++++++|++++....... + .. .
T Consensus 89 i~~~------~~~~~~lvG~S~Gg~~a~~~a~~~p~~v~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 162 (278)
T TIGR03056 89 CAAE------GLSPDGVIGHSAGAAIALRLALDGPVTPRMVVGINAALMPFEGMAGTLFPYMARVLACNPFTPPMMSRGA 162 (278)
T ss_pred HHHc------CCCCceEEEECccHHHHHHHHHhCCcccceEEEEcCcccccccccccccchhhHhhhhcccchHHHHhhc
Confidence 5432 2357899999999999999999999989988888765331000 0 00 0
Q ss_pred cccc--c-------hhhh--hHHHHH-----------------hcC---cccccCCCCCcEEEEEeCCCCCCCCchHHHH
Q 002209 804 QNED--R-------TLWE--ATSTYV-----------------EMS---PFMSANKLKKPILLVHGEEDNNSGTLTMQSD 852 (953)
Q Consensus 804 ~~~~--~-------~~~~--~~~~~~-----------------~~s---p~~~~~~i~~P~Li~~G~~D~~v~~~~~~~~ 852 (953)
.... . ..+. ....+. .+. ....+.++++|+|+++|++|..+| ....+
T Consensus 163 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~P~lii~g~~D~~vp--~~~~~ 240 (278)
T TIGR03056 163 ADQQRVERLIRDTGSLLDKAGMTYYGRLIRSPAHVDGALSMMAQWDLAPLNRDLPRITIPLHLIAGEEDKAVP--PDESK 240 (278)
T ss_pred ccCcchhHHhhccccccccchhhHHHHhhcCchhhhHHHHHhhcccccchhhhcccCCCCEEEEEeCCCcccC--HHHHH
Confidence 0000 0 0000 000000 000 012356688999999999999998 88777
Q ss_pred HHHHHHHhCCCcEEEEEeCCCCccCCCcccHHHHHHHHHHHHH
Q 002209 853 RFFNALKGHGALCRLVILPFESHGYAARESIMHVLWETDRWLQ 895 (953)
Q Consensus 853 ~~~~~l~~~g~~~~~~~~~~~~H~~~~~~~~~~~~~~i~~fl~ 895 (953)
++.+.+.. .+++.++++||.+. .+....+.+.+.+||+
T Consensus 241 ~~~~~~~~----~~~~~~~~~gH~~~-~e~p~~~~~~i~~f~~ 278 (278)
T TIGR03056 241 RAATRVPT----ATLHVVPGGGHLVH-EEQADGVVGLILQAAE 278 (278)
T ss_pred HHHHhccC----CeEEEECCCCCccc-ccCHHHHHHHHHHHhC
Confidence 77665543 47889999999874 4567788888888873
No 85
>PRK10673 acyl-CoA esterase; Provisional
Probab=99.47 E-value=2.6e-12 Score=136.10 Aligned_cols=195 Identities=14% Similarity=0.106 Sum_probs=123.0
Q ss_pred ccEEEEeCCCCCcCcCCCCcccCCCCCCCCccchHHHHHHHcCcEEEEcCCCCCCCCCChhhhh-hhHHHHHHHHHHHHH
Q 002209 670 LPCLFWSYPGEFKSKDAAGQVRGSPNEFPRIGSTSVLLWLARGFAILGGPTTPIIGEGDEEAND-RFVEQLVACAEAAVE 748 (953)
Q Consensus 670 ~P~vv~~hGg~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~G~~V~~~~~~~~~G~G~~~~~~-~~~~~~~~D~~~~~~ 748 (953)
.|.||++||.+... ..| ......| +.+|.|+. .+.+|+|.+.... .......+|+.++++
T Consensus 16 ~~~iv~lhG~~~~~-----------~~~----~~~~~~l-~~~~~vi~---~D~~G~G~s~~~~~~~~~~~~~d~~~~l~ 76 (255)
T PRK10673 16 NSPIVLVHGLFGSL-----------DNL----GVLARDL-VNDHDIIQ---VDMRNHGLSPRDPVMNYPAMAQDLLDTLD 76 (255)
T ss_pred CCCEEEECCCCCch-----------hHH----HHHHHHH-hhCCeEEE---ECCCCCCCCCCCCCCCHHHHHHHHHHHHH
Confidence 57899999963210 111 1222233 46799999 5556777765432 235677788888877
Q ss_pred HHHHcCCCCCCcEEEEEeChHHHHHHHHHHhCCCcccEEEEcccC-CCCCCC-------------CcCcccc--cchh--
Q 002209 749 EVVRRGVAHPSKIAVGGHSYGAFMTANLLAHAPHLFCCGIARSGA-YNRTLT-------------PFGFQNE--DRTL-- 810 (953)
Q Consensus 749 ~l~~~~~~d~~~i~l~G~S~GG~~a~~~a~~~p~~~~a~v~~~~~-~d~~~~-------------~~~~~~~--~~~~-- 810 (953)
.+ ..+++.|+||||||.+++.++.++|++++++|++++. ...... ....... ....
T Consensus 77 ~l------~~~~~~lvGhS~Gg~va~~~a~~~~~~v~~lvli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 150 (255)
T PRK10673 77 AL------QIEKATFIGHSMGGKAVMALTALAPDRIDKLVAIDIAPVDYHVRRHDEIFAAINAVSEAGATTRQQAAAIMR 150 (255)
T ss_pred Hc------CCCceEEEEECHHHHHHHHHHHhCHhhcceEEEEecCCCCccchhhHHHHHHHHHhhhcccccHHHHHHHHH
Confidence 65 2357999999999999999999999999999987532 111000 0000000 0000
Q ss_pred --------------------hh--h---HHHHHhcCcccccCCCCCcEEEEEeCCCCCCCCchHHHHHHHHHHHhCCCcE
Q 002209 811 --------------------WE--A---TSTYVEMSPFMSANKLKKPILLVHGEEDNNSGTLTMQSDRFFNALKGHGALC 865 (953)
Q Consensus 811 --------------------~~--~---~~~~~~~sp~~~~~~i~~P~Li~~G~~D~~v~~~~~~~~~~~~~l~~~g~~~ 865 (953)
|. . ...+........+.++++|+|+++|++|..++ ....+.+.+.+. ..
T Consensus 151 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~l~i~G~~D~~~~--~~~~~~~~~~~~----~~ 224 (255)
T PRK10673 151 QHLNEEGVIQFLLKSFVDGEWRFNVPVLWDQYPHIVGWEKIPAWPHPALFIRGGNSPYVT--EAYRDDLLAQFP----QA 224 (255)
T ss_pred HhcCCHHHHHHHHhcCCcceeEeeHHHHHHhHHHHhCCcccCCCCCCeEEEECCCCCCCC--HHHHHHHHHhCC----Cc
Confidence 00 0 00111111122345678999999999999987 666666655443 35
Q ss_pred EEEEeCCCCccCCCcccHHHHHHHHHHHHHH
Q 002209 866 RLVILPFESHGYAARESIMHVLWETDRWLQK 896 (953)
Q Consensus 866 ~~~~~~~~~H~~~~~~~~~~~~~~i~~fl~~ 896 (953)
++++++++||... .+....+.+.+.+||.+
T Consensus 225 ~~~~~~~~gH~~~-~~~p~~~~~~l~~fl~~ 254 (255)
T PRK10673 225 RAHVIAGAGHWVH-AEKPDAVLRAIRRYLND 254 (255)
T ss_pred EEEEeCCCCCeee-ccCHHHHHHHHHHHHhc
Confidence 8889999999764 56677888899999864
No 86
>PLN00021 chlorophyllase
Probab=99.47 E-value=3.1e-12 Score=136.75 Aligned_cols=209 Identities=16% Similarity=0.094 Sum_probs=131.9
Q ss_pred cEEEEEEEcCCCCCCCCCCCccEEEEeCCCCCcCcCCCCcccCCCCCCCCccchHHHHHHHcCcEEEEcCCCCCCCCCCh
Q 002209 650 VQLSATLYLPPGYDPSKDGPLPCLFWSYPGEFKSKDAAGQVRGSPNEFPRIGSTSVLLWLARGFAILGGPTTPIIGEGDE 729 (953)
Q Consensus 650 ~~~~~~l~~P~~~~~~~~~~~P~vv~~hGg~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~G~~V~~~~~~~~~G~G~~ 729 (953)
..+++.+|+|.. .+++|+||++||+... ..+.......|+++||+|++++.++..+.+
T Consensus 37 ~~~p~~v~~P~~-----~g~~PvVv~lHG~~~~---------------~~~y~~l~~~Las~G~~VvapD~~g~~~~~-- 94 (313)
T PLN00021 37 PPKPLLVATPSE-----AGTYPVLLFLHGYLLY---------------NSFYSQLLQHIASHGFIVVAPQLYTLAGPD-- 94 (313)
T ss_pred CCceEEEEeCCC-----CCCCCEEEEECCCCCC---------------cccHHHHHHHHHhCCCEEEEecCCCcCCCC--
Confidence 468889999964 3459999999996311 111224456788999999998876532211
Q ss_pred hhhhhhHHHHHHHHHHHHHHHHHc--------CCCCCCcEEEEEeChHHHHHHHHHHhCCC-----cccEEEEcccCCCC
Q 002209 730 EANDRFVEQLVACAEAAVEEVVRR--------GVAHPSKIAVGGHSYGAFMTANLLAHAPH-----LFCCGIARSGAYNR 796 (953)
Q Consensus 730 ~~~~~~~~~~~~D~~~~~~~l~~~--------~~~d~~~i~l~G~S~GG~~a~~~a~~~p~-----~~~a~v~~~~~~d~ 796 (953)
....+.|..++++|+.+. ..+|.++++|+|||+||.+++.++..+++ .|+++|.+.|+...
T Consensus 95 ------~~~~i~d~~~~~~~l~~~l~~~l~~~~~~d~~~v~l~GHS~GG~iA~~lA~~~~~~~~~~~v~ali~ldPv~g~ 168 (313)
T PLN00021 95 ------GTDEIKDAAAVINWLSSGLAAVLPEGVRPDLSKLALAGHSRGGKTAFALALGKAAVSLPLKFSALIGLDPVDGT 168 (313)
T ss_pred ------chhhHHHHHHHHHHHHhhhhhhcccccccChhheEEEEECcchHHHHHHHhhccccccccceeeEEeecccccc
Confidence 122345566667776542 23677899999999999999999998864 57888888886442
Q ss_pred CCCCcCcccccchhhhhHHHHHhcCcccccCCCCCcEEEEEeCCCC-----CCC--CchHH-HHHHHHHHHhCCCcEEEE
Q 002209 797 TLTPFGFQNEDRTLWEATSTYVEMSPFMSANKLKKPILLVHGEEDN-----NSG--TLTMQ-SDRFFNALKGHGALCRLV 868 (953)
Q Consensus 797 ~~~~~~~~~~~~~~~~~~~~~~~~sp~~~~~~i~~P~Li~~G~~D~-----~v~--~~~~~-~~~~~~~l~~~g~~~~~~ 868 (953)
.... . ..++ .+ .+.+ ..-++..|+||+++..|. .+| .+... -.++|++++. ++.+.
T Consensus 169 ~~~~---~---~~p~----il-~~~~--~s~~~~~P~liig~g~~~~~~~~~~p~~ap~~~~~~~f~~~~~~---~~~~~ 232 (313)
T PLN00021 169 SKGK---Q---TPPP----VL-TYAP--HSFNLDIPVLVIGTGLGGEPRNPLFPPCAPDGVNHAEFFNECKA---PAVHF 232 (313)
T ss_pred cccc---C---CCCc----cc-ccCc--ccccCCCCeEEEecCCCcccccccccccCCCCCCHHHHHHhcCC---Ceeee
Confidence 1110 0 0000 00 1111 122367999999999763 111 11333 3788887765 46788
Q ss_pred EeCCCCccCCCcc----------------------cHHHHHHHHHHHHHHhccCCC
Q 002209 869 ILPFESHGYAARE----------------------SIMHVLWETDRWLQKYCVSNT 902 (953)
Q Consensus 869 ~~~~~~H~~~~~~----------------------~~~~~~~~i~~fl~~~l~~~~ 902 (953)
+.+++||.-.-.+ .++.+...+..||..++....
T Consensus 233 ~~~~~gH~~~~~~~~~~~~~~~~~~~c~~g~~~~~~r~~~~g~~~aFl~~~l~~~~ 288 (313)
T PLN00021 233 VAKDYGHMDMLDDDTSGIRGKITGCMCKNGKPRKPMRRFVGGAVVAFLKAYLEGDT 288 (313)
T ss_pred eecCCCcceeecCCCccccccccccccCCCCchHHHHHHHHHHHHHHHHHHhcCch
Confidence 8899999632111 123344578999999996543
No 87
>TIGR02240 PHA_depoly_arom poly(3-hydroxyalkanoate) depolymerase. This family consists of the polyhydroxyalkanoic acid (PHA) depolymerase of Pseudomonas oleovorans, Pseudomonas putida BM01, and related species. This enzyme is part of polyester storage and mobilization system as in many bacteria. However, species containing this enzyme are unusual in their capacity to produce aromatic polyesters when grown on carbon sources such as benzoic acid or phenylacetic acid.
Probab=99.47 E-value=3.2e-12 Score=136.98 Aligned_cols=211 Identities=14% Similarity=0.108 Sum_probs=132.6
Q ss_pred CCCcEEEEEEEcCCCCCCCCCCCccEEEEeCCCCCcCcCCCCcccCCCCCCCCccchHHHHHHHcCcEEEEcCCCCCCCC
Q 002209 647 KDGVQLSATLYLPPGYDPSKDGPLPCLFWSYPGEFKSKDAAGQVRGSPNEFPRIGSTSVLLWLARGFAILGGPTTPIIGE 726 (953)
Q Consensus 647 ~dg~~~~~~l~~P~~~~~~~~~~~P~vv~~hGg~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~G~~V~~~~~~~~~G~ 726 (953)
.+|.+++.+..... . ..|.||++||..... ..| ...... .+.+|.|++ .|..|+
T Consensus 9 ~~~~~~~~~~~~~~------~-~~~plvllHG~~~~~-----------~~w----~~~~~~-L~~~~~vi~---~Dl~G~ 62 (276)
T TIGR02240 9 LDGQSIRTAVRPGK------E-GLTPLLIFNGIGANL-----------ELV----FPFIEA-LDPDLEVIA---FDVPGV 62 (276)
T ss_pred cCCcEEEEEEecCC------C-CCCcEEEEeCCCcch-----------HHH----HHHHHH-hccCceEEE---ECCCCC
Confidence 47777776553211 1 135688999942110 011 122223 345799999 555788
Q ss_pred CChhhhh--hhHHHHHHHHHHHHHHHHHcCCCCCCcEEEEEeChHHHHHHHHHHhCCCcccEEEEcccCCCCCC------
Q 002209 727 GDEEAND--RFVEQLVACAEAAVEEVVRRGVAHPSKIAVGGHSYGAFMTANLLAHAPHLFCCGIARSGAYNRTL------ 798 (953)
Q Consensus 727 G~~~~~~--~~~~~~~~D~~~~~~~l~~~~~~d~~~i~l~G~S~GG~~a~~~a~~~p~~~~a~v~~~~~~d~~~------ 798 (953)
|.+..+. .......+|+.+.++.+ +.+++.|+||||||.+++.++.++|++++++|++++......
T Consensus 63 G~S~~~~~~~~~~~~~~~~~~~i~~l------~~~~~~LvG~S~GG~va~~~a~~~p~~v~~lvl~~~~~~~~~~~~~~~ 136 (276)
T TIGR02240 63 GGSSTPRHPYRFPGLAKLAARMLDYL------DYGQVNAIGVSWGGALAQQFAHDYPERCKKLILAATAAGAVMVPGKPK 136 (276)
T ss_pred CCCCCCCCcCcHHHHHHHHHHHHHHh------CcCceEEEEECHHHHHHHHHHHHCHHHhhheEEeccCCccccCCCchh
Confidence 8875432 22456667777766665 235799999999999999999999999999999986542100
Q ss_pred -----CC-cCcccc-----------------cchhhhh-H---------HHH----H--hcCcccccCCCCCcEEEEEeC
Q 002209 799 -----TP-FGFQNE-----------------DRTLWEA-T---------STY----V--EMSPFMSANKLKKPILLVHGE 839 (953)
Q Consensus 799 -----~~-~~~~~~-----------------~~~~~~~-~---------~~~----~--~~sp~~~~~~i~~P~Li~~G~ 839 (953)
.. ..+... ....... . ..+ . .......+.++++|+|+++|+
T Consensus 137 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~i~~P~lii~G~ 216 (276)
T TIGR02240 137 VLMMMASPRRYIQPSHGIHIAPDIYGGAFRRDPELAMAHASKVRSGGKLGYYWQLFAGLGWTSIHWLHKIQQPTLVLAGD 216 (276)
T ss_pred HHHHhcCchhhhccccccchhhhhccceeeccchhhhhhhhhcccCCCchHHHHHHHHcCCchhhHhhcCCCCEEEEEeC
Confidence 00 000000 0000000 0 000 0 011123457889999999999
Q ss_pred CCCCCCCchHHHHHHHHHHHhCCCcEEEEEeCCCCccCCCcccHHHHHHHHHHHHHHh
Q 002209 840 EDNNSGTLTMQSDRFFNALKGHGALCRLVILPFESHGYAARESIMHVLWETDRWLQKY 897 (953)
Q Consensus 840 ~D~~v~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~H~~~~~~~~~~~~~~i~~fl~~~ 897 (953)
+|..+| +..++++.+.+.. .+++++++ ||... .+....+.+.+.+|+++.
T Consensus 217 ~D~~v~--~~~~~~l~~~~~~----~~~~~i~~-gH~~~-~e~p~~~~~~i~~fl~~~ 266 (276)
T TIGR02240 217 DDPIIP--LINMRLLAWRIPN----AELHIIDD-GHLFL-ITRAEAVAPIIMKFLAEE 266 (276)
T ss_pred CCCcCC--HHHHHHHHHhCCC----CEEEEEcC-CCchh-hccHHHHHHHHHHHHHHh
Confidence 999998 8888888776643 47778886 99864 567788899999999875
No 88
>PRK10985 putative hydrolase; Provisional
Probab=99.46 E-value=1.1e-12 Score=143.23 Aligned_cols=228 Identities=17% Similarity=0.072 Sum_probs=136.0
Q ss_pred EEEcCCCcEEEEEEEcCCCCCCCCCCCccEEEEeCCCCCcCcCCCCcccCCCCCCCCccchHHHHHHHcCcEEEEcCCCC
Q 002209 643 KYQRKDGVQLSATLYLPPGYDPSKDGPLPCLFWSYPGEFKSKDAAGQVRGSPNEFPRIGSTSVLLWLARGFAILGGPTTP 722 (953)
Q Consensus 643 ~~~~~dg~~~~~~l~~P~~~~~~~~~~~P~vv~~hGg~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~G~~V~~~~~~~ 722 (953)
.++..||..+.......+. .+.+.|+||++||.... ....+....+..|+++||.|+.+|+
T Consensus 35 ~~~~~dg~~~~l~w~~~~~----~~~~~p~vll~HG~~g~-------------~~~~~~~~~~~~l~~~G~~v~~~d~-- 95 (324)
T PRK10985 35 RLELPDGDFVDLAWSEDPA----QARHKPRLVLFHGLEGS-------------FNSPYAHGLLEAAQKRGWLGVVMHF-- 95 (324)
T ss_pred EEECCCCCEEEEecCCCCc----cCCCCCEEEEeCCCCCC-------------CcCHHHHHHHHHHHHCCCEEEEEeC--
Confidence 3566788766544322111 12246899999995311 0111122345678899999999665
Q ss_pred CCCCCChhh--hhhhHHHHHHHHHHHHHHHHHcCCCCCCcEEEEEeChHHHHHHHHHHhCCCc--ccEEEEcccCCCCCC
Q 002209 723 IIGEGDEEA--NDRFVEQLVACAEAAVEEVVRRGVAHPSKIAVGGHSYGAFMTANLLAHAPHL--FCCGIARSGAYNRTL 798 (953)
Q Consensus 723 ~~G~G~~~~--~~~~~~~~~~D~~~~~~~l~~~~~~d~~~i~l~G~S~GG~~a~~~a~~~p~~--~~a~v~~~~~~d~~~ 798 (953)
+|+|.+.. ...+....+.|+..+++++.++.. ..+++++||||||.+++.+++.+++. ++++|++++.++...
T Consensus 96 -rG~g~~~~~~~~~~~~~~~~D~~~~i~~l~~~~~--~~~~~~vG~S~GG~i~~~~~~~~~~~~~~~~~v~i~~p~~~~~ 172 (324)
T PRK10985 96 -RGCSGEPNRLHRIYHSGETEDARFFLRWLQREFG--HVPTAAVGYSLGGNMLACLLAKEGDDLPLDAAVIVSAPLMLEA 172 (324)
T ss_pred -CCCCCCccCCcceECCCchHHHHHHHHHHHHhCC--CCCEEEEEecchHHHHHHHHHhhCCCCCccEEEEEcCCCCHHH
Confidence 45554321 111222357899999999987632 35899999999999888888776543 888888887754210
Q ss_pred CC-----c---Ccc-------------------cc----------cchh-------------h-hhHHHHHhcCcccccC
Q 002209 799 TP-----F---GFQ-------------------NE----------DRTL-------------W-EATSTYVEMSPFMSAN 827 (953)
Q Consensus 799 ~~-----~---~~~-------------------~~----------~~~~-------------~-~~~~~~~~~sp~~~~~ 827 (953)
.. . .+. .. .... + ...+.|...++...+.
T Consensus 173 ~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fd~~~~~~~~g~~~~~~~y~~~~~~~~l~ 252 (324)
T PRK10985 173 CSYRMEQGFSRVYQRYLLNLLKANAARKLAAYPGTLPINLAQLKSVRRLREFDDLITARIHGFADAIDYYRQCSALPLLN 252 (324)
T ss_pred HHHHHhhhHHHHHHHHHHHHHHHHHHHHHHhccccccCCHHHHhcCCcHHHHhhhheeccCCCCCHHHHHHHCChHHHHh
Confidence 00 0 000 00 0000 0 0122333445556678
Q ss_pred CCCCcEEEEEeCCCCCCCCchHHHHHHHHHHHhCCCcEEEEEeCCCCccCCCcc----cHHHHHHHHHHHHHHhc
Q 002209 828 KLKKPILLVHGEEDNNSGTLTMQSDRFFNALKGHGALCRLVILPFESHGYAARE----SIMHVLWETDRWLQKYC 898 (953)
Q Consensus 828 ~i~~P~Li~~G~~D~~v~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~H~~~~~~----~~~~~~~~i~~fl~~~l 898 (953)
++++|+|+++|++|..++ +.....+.+ ....+++++++++||...-.. ...-.-+.+.+||+.++
T Consensus 253 ~i~~P~lii~g~~D~~~~--~~~~~~~~~----~~~~~~~~~~~~~GH~~~~~g~~~~~~~w~~~~~~~~~~~~~ 321 (324)
T PRK10985 253 QIRKPTLIIHAKDDPFMT--HEVIPKPES----LPPNVEYQLTEHGGHVGFVGGTLLKPQMWLEQRIPDWLTTYL 321 (324)
T ss_pred CCCCCEEEEecCCCCCCC--hhhChHHHH----hCCCeEEEECCCCCceeeCCCCCCCCCccHHHHHHHHHHHhh
Confidence 899999999999999987 655444422 223478889999999643111 11223356788887664
No 89
>cd00200 WD40 WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and botto
Probab=99.46 E-value=1.4e-11 Score=131.98 Aligned_cols=264 Identities=15% Similarity=0.148 Sum_probs=166.1
Q ss_pred CCCCceecCCCCEEEEEecCCCCCccccccccceeceEEecCCCCCCcceeeeeceEEEEccCCCCCCceeeeecCCCCC
Q 002209 110 PLPALSFSPQRDKILFLKRRALPPLEELARPEEKLAGLRIDGKCNTRSRMSFYTGIGIHQLFPDGKLGQEIEIQGFPDGA 189 (953)
Q Consensus 110 ~~~~~~~SPDG~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~i~~~~~~g~~~~~~~l~~~~~~~ 189 (953)
.+..+.|+|||+.|++...+ +.+++|++.. + .....+.. ...
T Consensus 11 ~i~~~~~~~~~~~l~~~~~~---------------------------------g~i~i~~~~~-~--~~~~~~~~--~~~ 52 (289)
T cd00200 11 GVTCVAFSPDGKLLATGSGD---------------------------------GTIKVWDLET-G--ELLRTLKG--HTG 52 (289)
T ss_pred CEEEEEEcCCCCEEEEeecC---------------------------------cEEEEEEeeC-C--CcEEEEec--CCc
Confidence 57788999999999988754 3678999853 2 12233322 223
Q ss_pred cccceEeccCCCeEEEEEeeccccCCCCcceEEEEECCCCcee-ecccCCCccccccccceEEecCCeEEEEEecCCCCC
Q 002209 190 KLNFVTWSQDGKHLAFSIRIDAEDSSSSKLRVWVADVDTGKAR-PLFQSPDIYLNAIFDNFVWVNNSTLLVCTIPLLRGD 268 (953)
Q Consensus 190 ~~~~~~wSPDG~~laf~~~~~~~~~~~~~~~l~~~d~~~g~~~-~lt~~~~~~~~~~~~~~~wspDg~~l~~~~~~~~~~ 268 (953)
.+....|+|+++.|++... ...|+++++.+++.. .+..... . +..+.|+++++.++...
T Consensus 53 ~i~~~~~~~~~~~l~~~~~---------~~~i~i~~~~~~~~~~~~~~~~~-~----i~~~~~~~~~~~~~~~~------ 112 (289)
T cd00200 53 PVRDVAASADGTYLASGSS---------DKTIRLWDLETGECVRTLTGHTS-Y----VSSVAFSPDGRILSSSS------ 112 (289)
T ss_pred ceeEEEECCCCCEEEEEcC---------CCeEEEEEcCcccceEEEeccCC-c----EEEEEEcCCCCEEEEec------
Confidence 5668999999988888542 568888888875433 3322221 1 66889999987777550
Q ss_pred CCCCCCCCCCCceeecCCCccccchhhhhhcCCcchhhhhhhhccceEEEEEc-CCceeE-eCCC-CcccccccCCCCcE
Q 002209 269 PPKKPLVPLGPKMQSNEKRDIIQVRTFQDLLKDEYDEDLFDYYATTQLVLVSL-DGTVKE-IGPP-AVYTSLDPSPDEKY 345 (953)
Q Consensus 269 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~l~~~~~-~g~~~~-l~~~-~~~~~~~~SpDG~~ 345 (953)
..+.|.++++ +++... +... ..+..+.|+|+++.
T Consensus 113 -------------------------------------------~~~~i~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~ 149 (289)
T cd00200 113 -------------------------------------------RDKTIKVWDVETGKCLTTLRGHTDWVNSVAFSPDGTF 149 (289)
T ss_pred -------------------------------------------CCCeEEEEECCCcEEEEEeccCCCcEEEEEEcCcCCE
Confidence 1346777887 564333 3323 56888999999887
Q ss_pred EEEEEecCCccccccCCCCCcceEEEeccCceE-EEeccCCCcccCCccccccccCccceeeccCCCCceEEEEeccCCC
Q 002209 346 ILISSIHRPYSFIVPCGRFPRQVGVWTTDGIFV-RELCDLPLAEDIPIAFNSVRKGMRSINWRSDKPSTLYWAETQDGGD 424 (953)
Q Consensus 346 l~~~~~~~~~~~~~~~~~~~~~i~~~d~~g~~~-~~l~~~~~~~~~p~~~~~~~~~~~~~~wspDg~~i~~~~~~~~~~~ 424 (953)
|+....+ +.+.+||+..+.. ..+.... ..+..+.|+||++.+++.
T Consensus 150 l~~~~~~-------------~~i~i~d~~~~~~~~~~~~~~-------------~~i~~~~~~~~~~~l~~~-------- 195 (289)
T cd00200 150 VASSSQD-------------GTIKLWDLRTGKCVATLTGHT-------------GEVNSVAFSPDGEKLLSS-------- 195 (289)
T ss_pred EEEEcCC-------------CcEEEEEccccccceeEecCc-------------cccceEEECCCcCEEEEe--------
Confidence 7766523 3899999974432 2232211 234679999999877776
Q ss_pred cccccccCCeEEEEecCCCCCCCc-eEEeecccccCCeeeccCCceEEEEEecccCceEEEEEcCCCCCCCcEEeecCCC
Q 002209 425 AKVEVTPRDIIYTQQAEPVQGEGP-EILHKLDLRYGGISWCDDSLALVYESWYKTRRTRTWVISPGSKDVAPRILFDRSS 503 (953)
Q Consensus 425 ~~~~~~~~~~l~~~d~~~~~g~~~-~~l~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~ 503 (953)
...+.+.+++. ..++. ..+......+..+.|+|++..++..... + .+++++..++ ..........
T Consensus 196 -----~~~~~i~i~d~---~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~--~--~i~i~~~~~~--~~~~~~~~~~ 261 (289)
T cd00200 196 -----SSDGTIKLWDL---STGKCLGTLRGHENGVNSVAFSPDGYLLASGSED--G--TIRVWDLRTG--ECVQTLSGHT 261 (289)
T ss_pred -----cCCCcEEEEEC---CCCceecchhhcCCceEEEEEcCCCcEEEEEcCC--C--cEEEEEcCCc--eeEEEccccC
Confidence 33567888986 32332 2233445567789999997666654422 2 4666666553 2222222222
Q ss_pred ccccCCCCCCCeEeccCCCEEEEEe
Q 002209 504 EDVYSDPGSPMMRRTSTGTYVIAKI 528 (953)
Q Consensus 504 ~~~~~~~~~p~~~~SpDG~~l~~~~ 528 (953)
..+.. +.|+|+|+.++...
T Consensus 262 ~~i~~------~~~~~~~~~l~~~~ 280 (289)
T cd00200 262 NSVTS------LAWSPDGKRLASGS 280 (289)
T ss_pred CcEEE------EEECCCCCEEEEec
Confidence 22222 78999998887665
No 90
>KOG4178 consensus Soluble epoxide hydrolase [Lipid transport and metabolism]
Probab=99.46 E-value=8.7e-12 Score=127.64 Aligned_cols=199 Identities=15% Similarity=0.124 Sum_probs=133.3
Q ss_pred ccEEEEeCCCCCcCcCCCCcccCCCCCCCCccchHHHHHHHcCcEEEEcCCCCCCCCCChhhhhh----hHHHHHHHHHH
Q 002209 670 LPCLFWSYPGEFKSKDAAGQVRGSPNEFPRIGSTSVLLWLARGFAILGGPTTPIIGEGDEEANDR----FVEQLVACAEA 745 (953)
Q Consensus 670 ~P~vv~~hGg~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~G~~V~~~~~~~~~G~G~~~~~~~----~~~~~~~D~~~ 745 (953)
-|+|+++||.|.. +..|. .....|+.+||.|++ .|.+|+|.+..+.. .......|+..
T Consensus 44 gP~illlHGfPe~--------------wyswr-~q~~~la~~~~rviA---~DlrGyG~Sd~P~~~~~Yt~~~l~~di~~ 105 (322)
T KOG4178|consen 44 GPIVLLLHGFPES--------------WYSWR-HQIPGLASRGYRVIA---PDLRGYGFSDAPPHISEYTIDELVGDIVA 105 (322)
T ss_pred CCEEEEEccCCcc--------------chhhh-hhhhhhhhcceEEEe---cCCCCCCCCCCCCCcceeeHHHHHHHHHH
Confidence 7999999997632 22222 234468899999999 66689999877643 25567788888
Q ss_pred HHHHHHHcCCCCCCcEEEEEeChHHHHHHHHHHhCCCcccEEEEcccCCC--------CC-------CCCcCcccc----
Q 002209 746 AVEEVVRRGVAHPSKIAVGGHSYGAFMTANLLAHAPHLFCCGIARSGAYN--------RT-------LTPFGFQNE---- 806 (953)
Q Consensus 746 ~~~~l~~~~~~d~~~i~l~G~S~GG~~a~~~a~~~p~~~~a~v~~~~~~d--------~~-------~~~~~~~~~---- 806 (953)
.++.|. -+++.++||+||+.+|..++..+|+++++.|+.+..+. .. +....++..
T Consensus 106 lld~Lg------~~k~~lvgHDwGaivaw~la~~~Perv~~lv~~nv~~~~p~~~~~~~~~~~f~~~~y~~~fQ~~~~~E 179 (322)
T KOG4178|consen 106 LLDHLG------LKKAFLVGHDWGAIVAWRLALFYPERVDGLVTLNVPFPNPKLKPLDSSKAIFGKSYYICLFQEPGKPE 179 (322)
T ss_pred HHHHhc------cceeEEEeccchhHHHHHHHHhChhhcceEEEecCCCCCcccchhhhhccccCccceeEeccccCcch
Confidence 777764 36999999999999999999999999999998875432 00 000000000
Q ss_pred -------------------------------cch---hhhhHH-------------------HHHhcCc--ccccCCCCC
Q 002209 807 -------------------------------DRT---LWEATS-------------------TYVEMSP--FMSANKLKK 831 (953)
Q Consensus 807 -------------------------------~~~---~~~~~~-------------------~~~~~sp--~~~~~~i~~ 831 (953)
... .|++.+ .+....+ .....++++
T Consensus 180 ~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~t~edi~~~~~~f~~~g~~gplNyyrn~~r~w~a~~~~~~~i~i 259 (322)
T KOG4178|consen 180 TELSKDDTEMLVKTFRTRKTPGPLIVPKQPNENPLWLTEEDIAFYVSKFQIDGFTGPLNYYRNFRRNWEAAPWALAKITI 259 (322)
T ss_pred hhhccchhHHhHHhhhccccCCccccCCCCCCccchhhHHHHHHHHhccccccccccchhhHHHhhCchhcccccccccc
Confidence 000 122211 1122221 234566889
Q ss_pred cEEEEEeCCCCCCCCchHHHHHHHHHHHhCCCcEEEEEeCCCCccCCCcccHHHHHHHHHHHHHHh
Q 002209 832 PILLVHGEEDNNSGTLTMQSDRFFNALKGHGALCRLVILPFESHGYAARESIMHVLWETDRWLQKY 897 (953)
Q Consensus 832 P~Li~~G~~D~~v~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~H~~~~~~~~~~~~~~i~~fl~~~ 897 (953)
|++++.|+.|.+.+ +..-.+.+++.--. ..+.+++++.||.. ..++.+.+.+.+++||++.
T Consensus 260 Pv~fi~G~~D~v~~--~p~~~~~~rk~vp~--l~~~vv~~~~gH~v-qqe~p~~v~~~i~~f~~~~ 320 (322)
T KOG4178|consen 260 PVLFIWGDLDPVLP--YPIFGELYRKDVPR--LTERVVIEGIGHFV-QQEKPQEVNQAILGFINSF 320 (322)
T ss_pred ceEEEEecCccccc--chhHHHHHHHhhcc--ccceEEecCCcccc-cccCHHHHHHHHHHHHHhh
Confidence 99999999999987 44222333332211 13678899999976 5788899999999999875
No 91
>TIGR02427 protocat_pcaD 3-oxoadipate enol-lactonase. Members of this family are 3-oxoadipate enol-lactonase. Note that the substrate is known as 3-oxoadipate enol-lactone, 2-oxo-2,3-dihydrofuran-5-acetate, 4,5-Dihydro-5-oxofuran-2-acetate, and 5-oxo-4,5-dihydrofuran-2-acetate. The enzyme the catalyzes the fourth step in the protocatechuate degradation to beta-ketoadipate and then to succinyl-CoA and acetyl-CoA. 4-hydroxybenzoate, 3-hydroxybenzoate, and vanillate all can be converted in one step to protocatechuate. This enzyme also acts in catechol degradation. In genomes that catabolize both catechol and protocatechuate, two forms of this enzyme may be found. All members of the seed alignment for this model were chosen from within protocatechuate degradation operons of at least three genes of the pathway, from genomes with the complete pathway through beta-ketoadipate.
Probab=99.45 E-value=7.7e-13 Score=139.31 Aligned_cols=193 Identities=15% Similarity=0.156 Sum_probs=118.8
Q ss_pred ccEEEEeCCCCCcCcCCCCcccCCCCCCCCccchHHHHHHHcCcEEEEcCCCCCCCCCChhhhh--hhHHHHHHHHHHHH
Q 002209 670 LPCLFWSYPGEFKSKDAAGQVRGSPNEFPRIGSTSVLLWLARGFAILGGPTTPIIGEGDEEAND--RFVEQLVACAEAAV 747 (953)
Q Consensus 670 ~P~vv~~hGg~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~G~~V~~~~~~~~~G~G~~~~~~--~~~~~~~~D~~~~~ 747 (953)
.|+||++||.... ...| .... ...++||.|+. ++..|+|.+.... ......++|+.+.+
T Consensus 13 ~~~li~~hg~~~~-----------~~~~----~~~~-~~l~~~~~v~~---~d~~G~G~s~~~~~~~~~~~~~~~~~~~i 73 (251)
T TIGR02427 13 APVLVFINSLGTD-----------LRMW----DPVL-PALTPDFRVLR---YDKRGHGLSDAPEGPYSIEDLADDVLALL 73 (251)
T ss_pred CCeEEEEcCcccc-----------hhhH----HHHH-HHhhcccEEEE---ecCCCCCCCCCCCCCCCHHHHHHHHHHHH
Confidence 5899999994211 0111 1223 33457999999 4556777664322 12345555655555
Q ss_pred HHHHHcCCCCCCcEEEEEeChHHHHHHHHHHhCCCcccEEEEcccCCCCCCC-Cc----------C--------------
Q 002209 748 EEVVRRGVAHPSKIAVGGHSYGAFMTANLLAHAPHLFCCGIARSGAYNRTLT-PF----------G-------------- 802 (953)
Q Consensus 748 ~~l~~~~~~d~~~i~l~G~S~GG~~a~~~a~~~p~~~~a~v~~~~~~d~~~~-~~----------~-------------- 802 (953)
+.+ +.+++.++|||+||.+++.++.++|++++++|+.++....... .+ .
T Consensus 74 ~~~------~~~~v~liG~S~Gg~~a~~~a~~~p~~v~~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 147 (251)
T TIGR02427 74 DHL------GIERAVFCGLSLGGLIAQGLAARRPDRVRALVLSNTAAKIGTPESWNARIAAVRAEGLAALADAVLERWFT 147 (251)
T ss_pred HHh------CCCceEEEEeCchHHHHHHHHHHCHHHhHHHhhccCccccCchhhHHHHHhhhhhccHHHHHHHHHHHHcc
Confidence 443 3468999999999999999999999999998887754321110 00 0
Q ss_pred --cccccch---hhh------hH-------HHHHhcCcccccCCCCCcEEEEEeCCCCCCCCchHHHHHHHHHHHhCCCc
Q 002209 803 --FQNEDRT---LWE------AT-------STYVEMSPFMSANKLKKPILLVHGEEDNNSGTLTMQSDRFFNALKGHGAL 864 (953)
Q Consensus 803 --~~~~~~~---~~~------~~-------~~~~~~sp~~~~~~i~~P~Li~~G~~D~~v~~~~~~~~~~~~~l~~~g~~ 864 (953)
+...... .+. .. ..+...+....+.++++|+|+++|++|..+| .+...++.+.+. .
T Consensus 148 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Pvlii~g~~D~~~~--~~~~~~~~~~~~----~ 221 (251)
T TIGR02427 148 PGFREAHPARLDLYRNMLVRQPPDGYAGCCAAIRDADFRDRLGAIAVPTLCIAGDQDGSTP--PELVREIADLVP----G 221 (251)
T ss_pred cccccCChHHHHHHHHHHHhcCHHHHHHHHHHHhcccHHHHhhhcCCCeEEEEeccCCcCC--hHHHHHHHHhCC----C
Confidence 0000000 000 00 0011112223456788999999999999998 877777766653 2
Q ss_pred EEEEEeCCCCccCCCcccHHHHHHHHHHHH
Q 002209 865 CRLVILPFESHGYAARESIMHVLWETDRWL 894 (953)
Q Consensus 865 ~~~~~~~~~~H~~~~~~~~~~~~~~i~~fl 894 (953)
.+++++++++|... .+....+.+.+.+||
T Consensus 222 ~~~~~~~~~gH~~~-~~~p~~~~~~i~~fl 250 (251)
T TIGR02427 222 ARFAEIRGAGHIPC-VEQPEAFNAALRDFL 250 (251)
T ss_pred ceEEEECCCCCccc-ccChHHHHHHHHHHh
Confidence 57889999999764 455667777777775
No 92
>PLN02824 hydrolase, alpha/beta fold family protein
Probab=99.45 E-value=4.5e-12 Score=137.24 Aligned_cols=195 Identities=16% Similarity=0.159 Sum_probs=122.0
Q ss_pred cEEEEeCCCCCcCcCCCCcccCCCCCCCCccchHHHHHHHcCcEEEEcCCCCCCCCCChhhhh---------hhHHHHHH
Q 002209 671 PCLFWSYPGEFKSKDAAGQVRGSPNEFPRIGSTSVLLWLARGFAILGGPTTPIIGEGDEEAND---------RFVEQLVA 741 (953)
Q Consensus 671 P~vv~~hGg~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~G~~V~~~~~~~~~G~G~~~~~~---------~~~~~~~~ 741 (953)
|.||++||.+... ..| . .....|+.+ |.|++ +|..|+|.+.... ..+....+
T Consensus 30 ~~vlllHG~~~~~-----------~~w---~-~~~~~L~~~-~~vi~---~DlpG~G~S~~~~~~~~~~~~~~~~~~~a~ 90 (294)
T PLN02824 30 PALVLVHGFGGNA-----------DHW---R-KNTPVLAKS-HRVYA---IDLLGYGYSDKPNPRSAPPNSFYTFETWGE 90 (294)
T ss_pred CeEEEECCCCCCh-----------hHH---H-HHHHHHHhC-CeEEE---EcCCCCCCCCCCccccccccccCCHHHHHH
Confidence 6799999964211 111 1 233455555 69999 5557888775421 12455566
Q ss_pred HHHHHHHHHHHcCCCCCCcEEEEEeChHHHHHHHHHHhCCCcccEEEEcccCCCCC---CCC-cCc------cc---c--
Q 002209 742 CAEAAVEEVVRRGVAHPSKIAVGGHSYGAFMTANLLAHAPHLFCCGIARSGAYNRT---LTP-FGF------QN---E-- 806 (953)
Q Consensus 742 D~~~~~~~l~~~~~~d~~~i~l~G~S~GG~~a~~~a~~~p~~~~a~v~~~~~~d~~---~~~-~~~------~~---~-- 806 (953)
|+.+.++.+ . .+++.|+||||||.+++.++.++|++++++|++++..... ... ... .. .
T Consensus 91 ~l~~~l~~l---~---~~~~~lvGhS~Gg~va~~~a~~~p~~v~~lili~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 164 (294)
T PLN02824 91 QLNDFCSDV---V---GDPAFVICNSVGGVVGLQAAVDAPELVRGVMLINISLRGLHIKKQPWLGRPFIKAFQNLLRETA 164 (294)
T ss_pred HHHHHHHHh---c---CCCeEEEEeCHHHHHHHHHHHhChhheeEEEEECCCcccccccccchhhhHHHHHHHHHHhchh
Confidence 666665544 2 3689999999999999999999999999999988643110 000 000 00 0
Q ss_pred ---------c-----chh----hhh--------H-------------HHHHh---cC----cccccCCCCCcEEEEEeCC
Q 002209 807 ---------D-----RTL----WEA--------T-------------STYVE---MS----PFMSANKLKKPILLVHGEE 840 (953)
Q Consensus 807 ---------~-----~~~----~~~--------~-------------~~~~~---~s----p~~~~~~i~~P~Li~~G~~ 840 (953)
. ... +.. . ..+.. +. ....+.++++|+|+++|++
T Consensus 165 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~i~~P~lvi~G~~ 244 (294)
T PLN02824 165 VGKAFFKSVATPETVKNILCQCYHDDSAVTDELVEAILRPGLEPGAVDVFLDFISYSGGPLPEELLPAVKCPVLIAWGEK 244 (294)
T ss_pred HHHHHHHhhcCHHHHHHHHHHhccChhhccHHHHHHHHhccCCchHHHHHHHHhccccccchHHHHhhcCCCeEEEEecC
Confidence 0 000 000 0 00000 00 1123567899999999999
Q ss_pred CCCCCCchHHHHHHHHHHHhCCCcEEEEEeCCCCccCCCcccHHHHHHHHHHHHHHh
Q 002209 841 DNNSGTLTMQSDRFFNALKGHGALCRLVILPFESHGYAARESIMHVLWETDRWLQKY 897 (953)
Q Consensus 841 D~~v~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~H~~~~~~~~~~~~~~i~~fl~~~ 897 (953)
|..+| ...++.+.+.. ...++++++++||... .++.+.+.+.+.+||+++
T Consensus 245 D~~~~--~~~~~~~~~~~----~~~~~~~i~~~gH~~~-~e~p~~~~~~i~~fl~~~ 294 (294)
T PLN02824 245 DPWEP--VELGRAYANFD----AVEDFIVLPGVGHCPQ-DEAPELVNPLIESFVARH 294 (294)
T ss_pred CCCCC--hHHHHHHHhcC----CccceEEeCCCCCChh-hhCHHHHHHHHHHHHhcC
Confidence 99998 77766643322 2257899999999764 677888999999998763
No 93
>COG0400 Predicted esterase [General function prediction only]
Probab=99.44 E-value=7e-12 Score=123.75 Aligned_cols=130 Identities=23% Similarity=0.218 Sum_probs=105.0
Q ss_pred HHHHHHHHHHHHHHHHcCCCCCCcEEEEEeChHHHHHHHHHHhCCCcccEEEEcccCCCCCCCCcCcccccchhhhhHHH
Q 002209 737 EQLVACAEAAVEEVVRRGVAHPSKIAVGGHSYGAFMTANLLAHAPHLFCCGIARSGAYNRTLTPFGFQNEDRTLWEATST 816 (953)
Q Consensus 737 ~~~~~D~~~~~~~l~~~~~~d~~~i~l~G~S~GG~~a~~~a~~~p~~~~a~v~~~~~~d~~~~~~~~~~~~~~~~~~~~~ 816 (953)
......+.++++.+.++..+|.+|++++|+|.|+.+++.+..++|..|+++|+.+|..-....
T Consensus 77 ~~~~~~~~~~l~~~~~~~gi~~~~ii~~GfSqGA~ial~~~l~~~~~~~~ail~~g~~~~~~~----------------- 139 (207)
T COG0400 77 DLETEKLAEFLEELAEEYGIDSSRIILIGFSQGANIALSLGLTLPGLFAGAILFSGMLPLEPE----------------- 139 (207)
T ss_pred HHHHHHHHHHHHHHHHHhCCChhheEEEecChHHHHHHHHHHhCchhhccchhcCCcCCCCCc-----------------
Confidence 344556666777777777899999999999999999999999999999999999986432110
Q ss_pred HHhcCcccccCCCCCcEEEEEeCCCCCCCCchHHHHHHHHHHHhCCCcEEEEEeCCCCccCCCcccHHHHHHHHHHHHHH
Q 002209 817 YVEMSPFMSANKLKKPILLVHGEEDNNSGTLTMQSDRFFNALKGHGALCRLVILPFESHGYAARESIMHVLWETDRWLQK 896 (953)
Q Consensus 817 ~~~~sp~~~~~~i~~P~Li~~G~~D~~v~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~H~~~~~~~~~~~~~~i~~fl~~ 896 (953)
.....-.+|+|++||+.|++|| ...+.++.+.|++.|.++++..++ .||.+. .+.++.+.+|+..
T Consensus 140 -------~~~~~~~~pill~hG~~Dpvvp--~~~~~~l~~~l~~~g~~v~~~~~~-~GH~i~-----~e~~~~~~~wl~~ 204 (207)
T COG0400 140 -------LLPDLAGTPILLSHGTEDPVVP--LALAEALAEYLTASGADVEVRWHE-GGHEIP-----PEELEAARSWLAN 204 (207)
T ss_pred -------cccccCCCeEEEeccCcCCccC--HHHHHHHHHHHHHcCCCEEEEEec-CCCcCC-----HHHHHHHHHHHHh
Confidence 0111235899999999999999 999999999999999999999999 699985 3446777788876
Q ss_pred hc
Q 002209 897 YC 898 (953)
Q Consensus 897 ~l 898 (953)
.+
T Consensus 205 ~~ 206 (207)
T COG0400 205 TL 206 (207)
T ss_pred cc
Confidence 53
No 94
>PLN03087 BODYGUARD 1 domain containing hydrolase; Provisional
Probab=99.44 E-value=5.3e-12 Score=141.57 Aligned_cols=223 Identities=13% Similarity=0.126 Sum_probs=134.0
Q ss_pred EEEEEcCCCcEEEEEEEcCCCCCCCCCCCccEEEEeCCCCCcCcCCCCcccCCCCCCCCccchHHHHHH---HcCcEEEE
Q 002209 641 LIKYQRKDGVQLSATLYLPPGYDPSKDGPLPCLFWSYPGEFKSKDAAGQVRGSPNEFPRIGSTSVLLWL---ARGFAILG 717 (953)
Q Consensus 641 ~~~~~~~dg~~~~~~l~~P~~~~~~~~~~~P~vv~~hGg~~~~~~~~~~~~~~~~~~~~~~~~~~~~la---~~G~~V~~ 717 (953)
...|.+..|.+++.....|++. ...|.||++||.+... ..|.......|+ +++|.|+.
T Consensus 177 ~~~~~~~~~~~l~~~~~gp~~~-----~~k~~VVLlHG~~~s~--------------~~W~~~~~~~L~~~~~~~yrVia 237 (481)
T PLN03087 177 CTSWLSSSNESLFVHVQQPKDN-----KAKEDVLFIHGFISSS--------------AFWTETLFPNFSDAAKSTYRLFA 237 (481)
T ss_pred eeeeEeeCCeEEEEEEecCCCC-----CCCCeEEEECCCCccH--------------HHHHHHHHHHHHHHhhCCCEEEE
Confidence 3455555678899888888641 1246799999963110 011111122333 47999999
Q ss_pred cCCCCCCCCCChhhhhh---hHHHHHHHHHHHHHHHHHcCCCCCCcEEEEEeChHHHHHHHHHHhCCCcccEEEEcccCC
Q 002209 718 GPTTPIIGEGDEEANDR---FVEQLVACAEAAVEEVVRRGVAHPSKIAVGGHSYGAFMTANLLAHAPHLFCCGIARSGAY 794 (953)
Q Consensus 718 ~~~~~~~G~G~~~~~~~---~~~~~~~D~~~~~~~l~~~~~~d~~~i~l~G~S~GG~~a~~~a~~~p~~~~a~v~~~~~~ 794 (953)
+ |..|+|.+..... ......+|+. ..+.+.. +.+++.++||||||.+++.++.++|++++++|++++..
T Consensus 238 ~---Dl~G~G~S~~p~~~~ytl~~~a~~l~---~~ll~~l--g~~k~~LVGhSmGG~iAl~~A~~~Pe~V~~LVLi~~~~ 309 (481)
T PLN03087 238 V---DLLGFGRSPKPADSLYTLREHLEMIE---RSVLERY--KVKSFHIVAHSLGCILALALAVKHPGAVKSLTLLAPPY 309 (481)
T ss_pred E---CCCCCCCCcCCCCCcCCHHHHHHHHH---HHHHHHc--CCCCEEEEEECHHHHHHHHHHHhChHhccEEEEECCCc
Confidence 4 5567787754311 1233344442 1222221 24689999999999999999999999999999988643
Q ss_pred CCCCC---------------C-c---Cccc------c--cc----------hhhhhH----------HHHH----hc--C
Q 002209 795 NRTLT---------------P-F---GFQN------E--DR----------TLWEAT----------STYV----EM--S 821 (953)
Q Consensus 795 d~~~~---------------~-~---~~~~------~--~~----------~~~~~~----------~~~~----~~--s 821 (953)
..... . + .+.. . .. ..|+.. ..+. .. .
T Consensus 310 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~l~~~~~~~~~~ 389 (481)
T PLN03087 310 YPVPKGVQATQYVMRKVAPRRVWPPIAFGASVACWYEHISRTICLVICKNHRLWEFLTRLLTRNRMRTFLIEGFFCHTHN 389 (481)
T ss_pred cccccchhHHHHHHHHhcccccCCccccchhHHHHHHHHHhhhhcccccchHHHHHHHHHhhhhhhhHHHHHHHHhccch
Confidence 21000 0 0 0000 0 00 001100 0000 00 0
Q ss_pred c-------------------c-cccCCCCCcEEEEEeCCCCCCCCchHHHHHHHHHHHhCCCcEEEEEeCCCCccCCCcc
Q 002209 822 P-------------------F-MSANKLKKPILLVHGEEDNNSGTLTMQSDRFFNALKGHGALCRLVILPFESHGYAARE 881 (953)
Q Consensus 822 p-------------------~-~~~~~i~~P~Li~~G~~D~~v~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~H~~~~~~ 881 (953)
+ + ....++++|+|++||++|..+| ++.++.+.+.+.. .++++++++||.....+
T Consensus 390 ~~~~~l~~~i~~~~~~l~~~l~~l~~~I~vPtLII~Ge~D~ivP--~~~~~~la~~iP~----a~l~vI~~aGH~~~v~e 463 (481)
T PLN03087 390 AAWHTLHNIICGSGSKLDGYLDHVRDQLKCDVAIFHGGDDELIP--VECSYAVKAKVPR----ARVKVIDDKDHITIVVG 463 (481)
T ss_pred hhHHHHHHHHhchhhhhhhHHHHHHHhCCCCEEEEEECCCCCCC--HHHHHHHHHhCCC----CEEEEeCCCCCcchhhc
Confidence 0 0 0112688999999999999998 8888888777643 58999999999864345
Q ss_pred cHHHHHHHHHHHHHH
Q 002209 882 SIMHVLWETDRWLQK 896 (953)
Q Consensus 882 ~~~~~~~~i~~fl~~ 896 (953)
....+.+.+.+|...
T Consensus 464 ~p~~fa~~L~~F~~~ 478 (481)
T PLN03087 464 RQKEFARELEEIWRR 478 (481)
T ss_pred CHHHHHHHHHHHhhc
Confidence 667777888887643
No 95
>KOG0315 consensus G-protein beta subunit-like protein (contains WD40 repeats) [General function prediction only]
Probab=99.44 E-value=7e-12 Score=120.10 Aligned_cols=240 Identities=15% Similarity=0.145 Sum_probs=163.1
Q ss_pred CCCCceecCCCCEEEEEecCCCCCccccccccceeceEEecCCCCCCcceeeeeceEEEEccCCCCCCceeeeecCCCC-
Q 002209 110 PLPALSFSPQRDKILFLKRRALPPLEELARPEEKLAGLRIDGKCNTRSRMSFYTGIGIHQLFPDGKLGQEIEIQGFPDG- 188 (953)
Q Consensus 110 ~~~~~~~SPDG~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~i~~~~~~g~~~~~~~l~~~~~~- 188 (953)
.+..+.++||++.||..... .|+++|+++ +...++..+...
T Consensus 42 qVNrLeiTpdk~~LAaa~~q----------------------------------hvRlyD~~S----~np~Pv~t~e~h~ 83 (311)
T KOG0315|consen 42 QVNRLEITPDKKDLAAAGNQ----------------------------------HVRLYDLNS----NNPNPVATFEGHT 83 (311)
T ss_pred ceeeEEEcCCcchhhhccCC----------------------------------eeEEEEccC----CCCCceeEEeccC
Confidence 57789999999999988774 789999965 223233323222
Q ss_pred CcccceEeccCCCeEEEEEeeccccCCCCcceEEEEECCCCceeecccCCCccccccccceEEecCCeEEEEEecCCCCC
Q 002209 189 AKLNFVTWSQDGKHLAFSIRIDAEDSSSSKLRVWVADVDTGKARPLFQSPDIYLNAIFDNFVWVNNSTLLVCTIPLLRGD 268 (953)
Q Consensus 189 ~~~~~~~wSPDG~~laf~~~~~~~~~~~~~~~l~~~d~~~g~~~~lt~~~~~~~~~~~~~~~wspDg~~l~~~~~~~~~~ 268 (953)
..+..+.|--||+|++.. +++..+.++|+..-...++...... +..+...|+-..|+..
T Consensus 84 kNVtaVgF~~dgrWMyTg---------seDgt~kIWdlR~~~~qR~~~~~sp-----Vn~vvlhpnQteLis~------- 142 (311)
T KOG0315|consen 84 KNVTAVGFQCDGRWMYTG---------SEDGTVKIWDLRSLSCQRNYQHNSP-----VNTVVLHPNQTELISG------- 142 (311)
T ss_pred CceEEEEEeecCeEEEec---------CCCceEEEEeccCcccchhccCCCC-----cceEEecCCcceEEee-------
Confidence 478999999999999873 3455666677777667777665532 6778888887777755
Q ss_pred CCCCCCCCCCCceeecCCCccccchhhhhhcCCcchhhhhhhhccceEEEEEc-CC--ceeEeCCC-CcccccccCCCCc
Q 002209 269 PPKKPLVPLGPKMQSNEKRDIIQVRTFQDLLKDEYDEDLFDYYATTQLVLVSL-DG--TVKEIGPP-AVYTSLDPSPDEK 344 (953)
Q Consensus 269 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~l~~~~~-~g--~~~~l~~~-~~~~~~~~SpDG~ 344 (953)
| ..++|+++|+ +. ....+.+. ..+++....|||+
T Consensus 143 -----------------------------------d-------qsg~irvWDl~~~~c~~~liPe~~~~i~sl~v~~dgs 180 (311)
T KOG0315|consen 143 -----------------------------------D-------QSGNIRVWDLGENSCTHELIPEDDTSIQSLTVMPDGS 180 (311)
T ss_pred -----------------------------------c-------CCCcEEEEEccCCccccccCCCCCcceeeEEEcCCCc
Confidence 0 3467889998 44 33444444 7788999999999
Q ss_pred EEEEEEecCCccccccCCCCCcceEEEeccCce----EEEeccCCCcccCCccccccccCccceeeccCCCCceEEEEec
Q 002209 345 YILISSIHRPYSFIVPCGRFPRQVGVWTTDGIF----VRELCDLPLAEDIPIAFNSVRKGMRSINWRSDKPSTLYWAETQ 420 (953)
Q Consensus 345 ~l~~~~~~~~~~~~~~~~~~~~~i~~~d~~g~~----~~~l~~~~~~~~~p~~~~~~~~~~~~~~wspDg~~i~~~~~~~ 420 (953)
.++...+.+ +.++|++-+.. ..+++..+ .....+....+|||+|.|+-.
T Consensus 181 ml~a~nnkG-------------~cyvW~l~~~~~~s~l~P~~k~~----------ah~~~il~C~lSPd~k~lat~---- 233 (311)
T KOG0315|consen 181 MLAAANNKG-------------NCYVWRLLNHQTASELEPVHKFQ----------AHNGHILRCLLSPDVKYLATC---- 233 (311)
T ss_pred EEEEecCCc-------------cEEEEEccCCCccccceEhhhee----------cccceEEEEEECCCCcEEEee----
Confidence 998876443 89999986432 23333322 122233467899999988766
Q ss_pred cCCCcccccccCCeEEEEecCCCCCCCceEEeecccccCCeeeccCCceEEEEEecccCceEEEEEcCC
Q 002209 421 DGGDAKVEVTPRDIIYTQQAEPVQGEGPEILHKLDLRYGGISWCDDSLALVYESWYKTRRTRTWVISPG 489 (953)
Q Consensus 421 ~~~~~~~~~~~~~~l~~~d~~~~~g~~~~~l~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~l~~~d~~ 489 (953)
+....+++|+.+.. =.....++.+...+...+||.||++|+.++.+.. .+||-+...
T Consensus 234 ---------ssdktv~iwn~~~~-~kle~~l~gh~rWvWdc~FS~dg~YlvTassd~~--~rlW~~~~~ 290 (311)
T KOG0315|consen 234 ---------SSDKTVKIWNTDDF-FKLELVLTGHQRWVWDCAFSADGEYLVTASSDHT--ARLWDLSAG 290 (311)
T ss_pred ---------cCCceEEEEecCCc-eeeEEEeecCCceEEeeeeccCccEEEecCCCCc--eeecccccC
Confidence 45567778875111 0112345666666778899999999999887753 378766543
No 96
>TIGR01249 pro_imino_pep_1 proline iminopeptidase, Neisseria-type subfamily. This model represents one of two related families of proline iminopeptidase in the alpha/beta fold hydrolase family. The fine specificities of the various members, including both the range of short peptides from which proline can be removed and whether other amino acids such as alanine can be also removed, may vary among members.
Probab=99.43 E-value=3.3e-12 Score=138.75 Aligned_cols=217 Identities=16% Similarity=0.125 Sum_probs=126.0
Q ss_pred EEEcCCCcEEEEEEEcCCCCCCCCCCCccEEEEeCCCCCcCcCCCCcccCCCCCCCCccchHHHHHHHcCcEEEEcCCCC
Q 002209 643 KYQRKDGVQLSATLYLPPGYDPSKDGPLPCLFWSYPGEFKSKDAAGQVRGSPNEFPRIGSTSVLLWLARGFAILGGPTTP 722 (953)
Q Consensus 643 ~~~~~dg~~~~~~l~~P~~~~~~~~~~~P~vv~~hGg~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~G~~V~~~~~~~ 722 (953)
.+...+|.+++...+-++ + .+.||++||++.... .......+...+|.|+. .+
T Consensus 8 ~~~~~~~~~l~y~~~g~~------~--~~~lvllHG~~~~~~----------------~~~~~~~~~~~~~~vi~---~D 60 (306)
T TIGR01249 8 YLNVSDNHQLYYEQSGNP------D--GKPVVFLHGGPGSGT----------------DPGCRRFFDPETYRIVL---FD 60 (306)
T ss_pred eEEcCCCcEEEEEECcCC------C--CCEEEEECCCCCCCC----------------CHHHHhccCccCCEEEE---EC
Confidence 445557777765443211 1 345788999752210 01122234457899999 55
Q ss_pred CCCCCChhhhhhhHHHHHHHHHHHHHHHHHcCCCCCCcEEEEEeChHHHHHHHHHHhCCCcccEEEEcccCCCCC-----
Q 002209 723 IIGEGDEEANDRFVEQLVACAEAAVEEVVRRGVAHPSKIAVGGHSYGAFMTANLLAHAPHLFCCGIARSGAYNRT----- 797 (953)
Q Consensus 723 ~~G~G~~~~~~~~~~~~~~D~~~~~~~l~~~~~~d~~~i~l~G~S~GG~~a~~~a~~~p~~~~a~v~~~~~~d~~----- 797 (953)
.+|+|.+............|+.+.+..+.+.- +.+++.++||||||++++.++.++|++++++|+.++.....
T Consensus 61 ~~G~G~S~~~~~~~~~~~~~~~~dl~~l~~~l--~~~~~~lvG~S~GG~ia~~~a~~~p~~v~~lvl~~~~~~~~~~~~~ 138 (306)
T TIGR01249 61 QRGCGKSTPHACLEENTTWDLVADIEKLREKL--GIKNWLVFGGSWGSTLALAYAQTHPEVVTGLVLRGIFLLREKEWSW 138 (306)
T ss_pred CCCCCCCCCCCCcccCCHHHHHHHHHHHHHHc--CCCCEEEEEECHHHHHHHHHHHHChHhhhhheeeccccCCHHHHHH
Confidence 56788775432111112223333333343332 23579999999999999999999999999888876532100
Q ss_pred --------CCC-----------cCcc-------------ccc-------chh---hhh-------------------HHH
Q 002209 798 --------LTP-----------FGFQ-------------NED-------RTL---WEA-------------------TST 816 (953)
Q Consensus 798 --------~~~-----------~~~~-------------~~~-------~~~---~~~-------------------~~~ 816 (953)
..+ .... ... ... |.. ...
T Consensus 139 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 218 (306)
T TIGR01249 139 FYEGGASMIYPDAWQRFMDSIPENERNEQLVNAYHDRLQSGDEETKLAAAKAWVDWESTTLLRPINEIVSTAEDFKFSLA 218 (306)
T ss_pred HHhcchhhhCHHHHHHHhhhCChhhhhccHHHHHHHHccCCCHHHHHHHHHHHHHHhChhhcCCCCCccccccchHHHHH
Confidence 000 0000 000 000 000 000
Q ss_pred HHh-----------cC----cccccCCC-CCcEEEEEeCCCCCCCCchHHHHHHHHHHHhCCCcEEEEEeCCCCccCCCc
Q 002209 817 YVE-----------MS----PFMSANKL-KKPILLVHGEEDNNSGTLTMQSDRFFNALKGHGALCRLVILPFESHGYAAR 880 (953)
Q Consensus 817 ~~~-----------~s----p~~~~~~i-~~P~Li~~G~~D~~v~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~H~~~~~ 880 (953)
+.. .+ -...+.++ ++|+|++||++|..+| ...+.++++.+.. .++++++++||....
T Consensus 219 ~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~P~lii~g~~D~~~p--~~~~~~~~~~~~~----~~~~~~~~~gH~~~~- 291 (306)
T TIGR01249 219 FARLENHYFVNKGFLDVENFILDNISKIRNIPTYIVHGRYDLCCP--LQSAWALHKAFPE----AELKVTNNAGHSAFD- 291 (306)
T ss_pred HHHHHHhHHHHhchhcCchHHHHhhhhccCCCeEEEecCCCCCCC--HHHHHHHHHhCCC----CEEEEECCCCCCCCC-
Confidence 000 00 01233456 5899999999999998 8888888877643 588899999998753
Q ss_pred ccHHHHHHHHHHHHHHhc
Q 002209 881 ESIMHVLWETDRWLQKYC 898 (953)
Q Consensus 881 ~~~~~~~~~i~~fl~~~l 898 (953)
....+.+.+|+..+|
T Consensus 292 ---~~~~~~i~~~~~~~~ 306 (306)
T TIGR01249 292 ---PNNLAALVHALETYL 306 (306)
T ss_pred ---hHHHHHHHHHHHHhC
Confidence 345677888887764
No 97
>PLN02872 triacylglycerol lipase
Probab=99.43 E-value=4.3e-12 Score=139.95 Aligned_cols=245 Identities=14% Similarity=0.101 Sum_probs=152.4
Q ss_pred cCCCceEEEEEEcCCCcEEEEEEEcCCCCCCCCCCCccEEEEeCCCCCcCcCCCCcccCCCCCCCCc--cchHHHHHHHc
Q 002209 634 LASLQKELIKYQRKDGVQLSATLYLPPGYDPSKDGPLPCLFWSYPGEFKSKDAAGQVRGSPNEFPRI--GSTSVLLWLAR 711 (953)
Q Consensus 634 ~~~~~~~~~~~~~~dg~~~~~~l~~P~~~~~~~~~~~P~vv~~hGg~~~~~~~~~~~~~~~~~~~~~--~~~~~~~la~~ 711 (953)
...+++|+..+++.||..+....+.+.. ......+.|+|+++||....+. .|... ....+..|+++
T Consensus 39 ~~gy~~e~h~v~T~DGy~L~l~ri~~~~-~~~~~~~~~~Vll~HGl~~ss~-----------~w~~~~~~~sla~~La~~ 106 (395)
T PLN02872 39 PAGYSCTEHTIQTKDGYLLALQRVSSRN-PRLGSQRGPPVLLQHGLFMAGD-----------AWFLNSPEQSLGFILADH 106 (395)
T ss_pred HcCCCceEEEEECCCCcEEEEEEcCCCC-CCCCCCCCCeEEEeCccccccc-----------ceeecCcccchHHHHHhC
Confidence 3467889999999999988776653322 1111123578999999642221 11100 11234467899
Q ss_pred CcEEEEcCCCCCCC-CCChh---h-----hhhhHHHHHHHHHHHHHHHHHcCCCCCCcEEEEEeChHHHHHHHHHHhCCC
Q 002209 712 GFAILGGPTTPIIG-EGDEE---A-----NDRFVEQLVACAEAAVEEVVRRGVAHPSKIAVGGHSYGAFMTANLLAHAPH 782 (953)
Q Consensus 712 G~~V~~~~~~~~~G-~G~~~---~-----~~~~~~~~~~D~~~~~~~l~~~~~~d~~~i~l~G~S~GG~~a~~~a~~~p~ 782 (953)
||.|+.+|.+|... +|... . ...+.+....|+.++++++.+.. .+++.++|||+||.+++.++ ..|+
T Consensus 107 GydV~l~n~RG~~~s~gh~~~~~~~~~fw~~s~~e~a~~Dl~a~id~i~~~~---~~~v~~VGhS~Gg~~~~~~~-~~p~ 182 (395)
T PLN02872 107 GFDVWVGNVRGTRWSYGHVTLSEKDKEFWDWSWQELALYDLAEMIHYVYSIT---NSKIFIVGHSQGTIMSLAAL-TQPN 182 (395)
T ss_pred CCCcccccccccccccCCCCCCccchhccCCcHHHHHHHHHHHHHHHHHhcc---CCceEEEEECHHHHHHHHHh-hChH
Confidence 99999977765421 22111 1 11233344589999999997642 36899999999999998555 5665
Q ss_pred ---cccEEEEcccCCCCCC-----------------------CCcCccc-----------------------------c-
Q 002209 783 ---LFCCGIARSGAYNRTL-----------------------TPFGFQN-----------------------------E- 806 (953)
Q Consensus 783 ---~~~a~v~~~~~~d~~~-----------------------~~~~~~~-----------------------------~- 806 (953)
.++++++.+|+..... ..+.... .
T Consensus 183 ~~~~v~~~~~l~P~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~C~~~~~c~~~~~~~~g~~~~~ 262 (395)
T PLN02872 183 VVEMVEAAALLCPISYLDHVTAPLVLRMVFMHLDQMVVAMGIHQLNFRSDVLVKLLDSICEGHMDCNDLLTSITGTNCCF 262 (395)
T ss_pred HHHHHHHHHHhcchhhhccCCCHHHHHHHHHhHHHHHHHhcCceecCCcHHHHHHHHHHccCchhHHHHHHHHhCCCccc
Confidence 4666666666421000 0000000 0
Q ss_pred c-------------ch-----------------------hhhhHHHHHhc-CcccccCCC--CCcEEEEEeCCCCCCCCc
Q 002209 807 D-------------RT-----------------------LWEATSTYVEM-SPFMSANKL--KKPILLVHGEEDNNSGTL 847 (953)
Q Consensus 807 ~-------------~~-----------------------~~~~~~~~~~~-sp~~~~~~i--~~P~Li~~G~~D~~v~~~ 847 (953)
. ++ ...+...|... .|...+.++ +.|+++++|++|..++
T Consensus 263 n~~~~~~~~~~~pagtS~k~~~H~~Q~~~s~~f~~yDyg~~~n~~~Yg~~~pP~Y~l~~i~~~~Pv~i~~G~~D~lv~-- 340 (395)
T PLN02872 263 NASRIDYYLEYEPHPSSVKNLRHLFQMIRKGTFAHYDYGIFKNLKLYGQVNPPAFDLSLIPKSLPLWMGYGGTDGLAD-- 340 (395)
T ss_pred chhhhhHHHhcCCCcchHHHHHHHHHHHhcCCcccCCCCchhhHHHhCCCCCCCcCcccCCCCccEEEEEcCCCCCCC--
Confidence 0 00 00011122222 234456777 5799999999999998
Q ss_pred hHHHHHHHHHHHhCCCcEEEEEeCCCCcc--CCCcccHHHHHHHHHHHHHHhcc
Q 002209 848 TMQSDRFFNALKGHGALCRLVILPFESHG--YAARESIMHVLWETDRWLQKYCV 899 (953)
Q Consensus 848 ~~~~~~~~~~l~~~g~~~~~~~~~~~~H~--~~~~~~~~~~~~~i~~fl~~~l~ 899 (953)
+....++.+.+... .+++.+++.+|. +...+..+.+++.+++||++++.
T Consensus 341 ~~dv~~l~~~Lp~~---~~l~~l~~~gH~dfi~~~eape~V~~~Il~fL~~~~~ 391 (395)
T PLN02872 341 VTDVEHTLAELPSK---PELLYLENYGHIDFLLSTSAKEDVYNHMIQFFRSLGK 391 (395)
T ss_pred HHHHHHHHHHCCCc---cEEEEcCCCCCHHHHhCcchHHHHHHHHHHHHHHhhh
Confidence 88888888877542 477889999996 44566678899999999998764
No 98
>PLN02679 hydrolase, alpha/beta fold family protein
Probab=99.42 E-value=5.4e-12 Score=139.91 Aligned_cols=199 Identities=16% Similarity=0.182 Sum_probs=121.8
Q ss_pred ccEEEEeCCCCCcCcCCCCcccCCCCCCCCccchHHHHHHHcCcEEEEcCCCCCCCCCChhhhh--h-hHHHHHHHHHHH
Q 002209 670 LPCLFWSYPGEFKSKDAAGQVRGSPNEFPRIGSTSVLLWLARGFAILGGPTTPIIGEGDEEAND--R-FVEQLVACAEAA 746 (953)
Q Consensus 670 ~P~vv~~hGg~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~G~~V~~~~~~~~~G~G~~~~~~--~-~~~~~~~D~~~~ 746 (953)
.|.||++||.+.. ...|. .....| +.+|.|+. .|..|+|.+.... . ......+|+.+.
T Consensus 88 gp~lvllHG~~~~--------------~~~w~-~~~~~L-~~~~~via---~Dl~G~G~S~~~~~~~~~~~~~a~~l~~~ 148 (360)
T PLN02679 88 GPPVLLVHGFGAS--------------IPHWR-RNIGVL-AKNYTVYA---IDLLGFGASDKPPGFSYTMETWAELILDF 148 (360)
T ss_pred CCeEEEECCCCCC--------------HHHHH-HHHHHH-hcCCEEEE---ECCCCCCCCCCCCCccccHHHHHHHHHHH
Confidence 3679999995311 11111 122233 45899999 5556888775432 1 234555565555
Q ss_pred HHHHHHcCCCCCCcEEEEEeChHHHHHHHHHH-hCCCcccEEEEcccCCCCCC----CCcC------------c------
Q 002209 747 VEEVVRRGVAHPSKIAVGGHSYGAFMTANLLA-HAPHLFCCGIARSGAYNRTL----TPFG------------F------ 803 (953)
Q Consensus 747 ~~~l~~~~~~d~~~i~l~G~S~GG~~a~~~a~-~~p~~~~a~v~~~~~~d~~~----~~~~------------~------ 803 (953)
++.+ ..+++.|+||||||.+++.++. ++|++++++|++++...... ..+. +
T Consensus 149 l~~l------~~~~~~lvGhS~Gg~ia~~~a~~~~P~rV~~LVLi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 222 (360)
T PLN02679 149 LEEV------VQKPTVLIGNSVGSLACVIAASESTRDLVRGLVLLNCAGGMNNKAVVDDWRIKLLLPLLWLIDFLLKQRG 222 (360)
T ss_pred HHHh------cCCCeEEEEECHHHHHHHHHHHhcChhhcCEEEEECCccccccccccchHHHhhhcchHHHHHHHhhchh
Confidence 5543 2358999999999999998887 46899999999876421100 0000 0
Q ss_pred ------ccc--cchhh---------------hh-------------HHHHHhc-------CcccccCCCCCcEEEEEeCC
Q 002209 804 ------QNE--DRTLW---------------EA-------------TSTYVEM-------SPFMSANKLKKPILLVHGEE 840 (953)
Q Consensus 804 ------~~~--~~~~~---------------~~-------------~~~~~~~-------sp~~~~~~i~~P~Li~~G~~ 840 (953)
... ..... +. ...+... +....+.++++|+||++|++
T Consensus 223 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~i~~PtLii~G~~ 302 (360)
T PLN02679 223 IASALFNRVKQRDNLKNILLSVYGNKEAVDDELVEIIRGPADDEGALDAFVSIVTGPPGPNPIKLIPRISLPILVLWGDQ 302 (360)
T ss_pred hHHHHHHHhcCHHHHHHHHHHhccCcccCCHHHHHHHHhhccCCChHHHHHHHHhcCCCCCHHHHhhhcCCCEEEEEeCC
Confidence 000 00000 00 0001100 11134567889999999999
Q ss_pred CCCCCCchHHH-HHHHHHHHhCCCcEEEEEeCCCCccCCCcccHHHHHHHHHHHHHH
Q 002209 841 DNNSGTLTMQS-DRFFNALKGHGALCRLVILPFESHGYAARESIMHVLWETDRWLQK 896 (953)
Q Consensus 841 D~~v~~~~~~~-~~~~~~l~~~g~~~~~~~~~~~~H~~~~~~~~~~~~~~i~~fl~~ 896 (953)
|..+| +... .++++.+.+.-...++++++++||.. ..+..+.+.+.+.+||.+
T Consensus 303 D~~~p--~~~~~~~~~~~l~~~ip~~~l~~i~~aGH~~-~~E~Pe~~~~~I~~FL~~ 356 (360)
T PLN02679 303 DPFTP--LDGPVGKYFSSLPSQLPNVTLYVLEGVGHCP-HDDRPDLVHEKLLPWLAQ 356 (360)
T ss_pred CCCcC--chhhHHHHHHhhhccCCceEEEEcCCCCCCc-cccCHHHHHHHHHHHHHh
Confidence 99987 6542 33455555443457899999999986 467788899999999975
No 99
>PLN02965 Probable pheophorbidase
Probab=99.42 E-value=7.5e-12 Score=132.29 Aligned_cols=177 Identities=14% Similarity=0.119 Sum_probs=114.7
Q ss_pred HHHHHHcCcEEEEcCCCCCCCCCChhhhh---hhHHHHHHHHHHHHHHHHHcCCCCCCcEEEEEeChHHHHHHHHHHhCC
Q 002209 705 VLLWLARGFAILGGPTTPIIGEGDEEAND---RFVEQLVACAEAAVEEVVRRGVAHPSKIAVGGHSYGAFMTANLLAHAP 781 (953)
Q Consensus 705 ~~~la~~G~~V~~~~~~~~~G~G~~~~~~---~~~~~~~~D~~~~~~~l~~~~~~d~~~i~l~G~S~GG~~a~~~a~~~p 781 (953)
...|++.||.|++ .|.+|+|.+.... .......+|+.+.++.+. . .+++.++||||||.+++.++.++|
T Consensus 23 ~~~L~~~~~~via---~Dl~G~G~S~~~~~~~~~~~~~a~dl~~~l~~l~----~-~~~~~lvGhSmGG~ia~~~a~~~p 94 (255)
T PLN02965 23 ATLLDAAGFKSTC---VDLTGAGISLTDSNTVSSSDQYNRPLFALLSDLP----P-DHKVILVGHSIGGGSVTEALCKFT 94 (255)
T ss_pred HHHHhhCCceEEE---ecCCcCCCCCCCccccCCHHHHHHHHHHHHHhcC----C-CCCEEEEecCcchHHHHHHHHhCc
Confidence 4456688999999 5557888775321 224566677777666541 1 148999999999999999999999
Q ss_pred CcccEEEEcccCC---CCCCC------------CcCc--ccc---c-------chhh-----h--hHH--HH--HhcCc-
Q 002209 782 HLFCCGIARSGAY---NRTLT------------PFGF--QNE---D-------RTLW-----E--ATS--TY--VEMSP- 822 (953)
Q Consensus 782 ~~~~a~v~~~~~~---d~~~~------------~~~~--~~~---~-------~~~~-----~--~~~--~~--~~~sp- 822 (953)
++++++|.+++.. ..... .+.+ ... . .... . ..+ .+ ....+
T Consensus 95 ~~v~~lvl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 174 (255)
T PLN02965 95 DKISMAIYVAAAMVKPGSIISPRLKNVMEGTEKIWDYTFGEGPDKPPTGIMMKPEFVRHYYYNQSPLEDYTLSSKLLRPA 174 (255)
T ss_pred hheeEEEEEccccCCCCCCccHHHHhhhhccccceeeeeccCCCCCcchhhcCHHHHHHHHhcCCCHHHHHHHHHhcCCC
Confidence 9999999887641 10000 0000 000 0 0000 0 000 00 00000
Q ss_pred -c----------cccCCCCCcEEEEEeCCCCCCCCchHHHHHHHHHHHhCCCcEEEEEeCCCCccCCCcccHHHHHHHHH
Q 002209 823 -F----------MSANKLKKPILLVHGEEDNNSGTLTMQSDRFFNALKGHGALCRLVILPFESHGYAARESIMHVLWETD 891 (953)
Q Consensus 823 -~----------~~~~~i~~P~Li~~G~~D~~v~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~H~~~~~~~~~~~~~~i~ 891 (953)
. ..+.++++|+|+++|++|..+| +..++.+.+.+.. .++++++++||... .+..+.+.+.+.
T Consensus 175 ~~~~~~~~~~~~~~~~~i~vP~lvi~g~~D~~~~--~~~~~~~~~~~~~----a~~~~i~~~GH~~~-~e~p~~v~~~l~ 247 (255)
T PLN02965 175 PVRAFQDLDKLPPNPEAEKVPRVYIKTAKDNLFD--PVRQDVMVENWPP----AQTYVLEDSDHSAF-FSVPTTLFQYLL 247 (255)
T ss_pred CCcchhhhhhccchhhcCCCCEEEEEcCCCCCCC--HHHHHHHHHhCCc----ceEEEecCCCCchh-hcCHHHHHHHHH
Confidence 0 1223588999999999999998 8777777766544 47889999999874 677788888888
Q ss_pred HHHHH
Q 002209 892 RWLQK 896 (953)
Q Consensus 892 ~fl~~ 896 (953)
+|++.
T Consensus 248 ~~~~~ 252 (255)
T PLN02965 248 QAVSS 252 (255)
T ss_pred HHHHH
Confidence 88765
No 100
>TIGR03866 PQQ_ABC_repeats PQQ-dependent catabolism-associated beta-propeller protein. Members of this protein family consist of seven repeats each of the YVTN family beta-propeller repeat (see TIGR02276). Members occur invariably as part of a transport operon that is associated with PQQ-dependent catabolism of alcohols such as phenylethanol.
Probab=99.42 E-value=1.3e-10 Score=126.36 Aligned_cols=246 Identities=14% Similarity=0.069 Sum_probs=144.9
Q ss_pred CCCceecCCCCEEEEEecCCCCCccccccccceeceEEecCCCCCCcceeeeeceEEEEccCCCCCCceeeeecCCCCCc
Q 002209 111 LPALSFSPQRDKILFLKRRALPPLEELARPEEKLAGLRIDGKCNTRSRMSFYTGIGIHQLFPDGKLGQEIEIQGFPDGAK 190 (953)
Q Consensus 111 ~~~~~~SPDG~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~i~~~~~~g~~~~~~~l~~~~~~~~ 190 (953)
+..++|||||+.++..... + +.|++||+.+ ++... .++.+..
T Consensus 33 ~~~l~~~~dg~~l~~~~~~------------------------~--------~~v~~~d~~~----~~~~~--~~~~~~~ 74 (300)
T TIGR03866 33 PRGITLSKDGKLLYVCASD------------------------S--------DTIQVIDLAT----GEVIG--TLPSGPD 74 (300)
T ss_pred CCceEECCCCCEEEEEECC------------------------C--------CeEEEEECCC----CcEEE--eccCCCC
Confidence 4578999999987655432 0 2578999743 22211 1222234
Q ss_pred ccceEeccCCCeEEEEEeeccccCCCCcceEEEEECCCCceeecccCCCccccccccceEEecCCeEEEEEecCCCCCCC
Q 002209 191 LNFVTWSQDGKHLAFSIRIDAEDSSSSKLRVWVADVDTGKARPLFQSPDIYLNAIFDNFVWVNNSTLLVCTIPLLRGDPP 270 (953)
Q Consensus 191 ~~~~~wSPDG~~laf~~~~~~~~~~~~~~~l~~~d~~~g~~~~lt~~~~~~~~~~~~~~~wspDg~~l~~~~~~~~~~~~ 270 (953)
.....|+|||+.|+.... ....|+++|+.+++.......... ...++|+|||+.+++...
T Consensus 75 ~~~~~~~~~g~~l~~~~~--------~~~~l~~~d~~~~~~~~~~~~~~~-----~~~~~~~~dg~~l~~~~~------- 134 (300)
T TIGR03866 75 PELFALHPNGKILYIANE--------DDNLVTVIDIETRKVLAEIPVGVE-----PEGMAVSPDGKIVVNTSE------- 134 (300)
T ss_pred ccEEEECCCCCEEEEEcC--------CCCeEEEEECCCCeEEeEeeCCCC-----cceEEECCCCCEEEEEec-------
Confidence 567899999997766431 234799999987654332221111 457899999999887611
Q ss_pred CCCCCCCCCceeecCCCccccchhhhhhcCCcchhhhhhhhccceEEEEEc-CCceeE-eCCCCcccccccCCCCcEEEE
Q 002209 271 KKPLVPLGPKMQSNEKRDIIQVRTFQDLLKDEYDEDLFDYYATTQLVLVSL-DGTVKE-IGPPAVYTSLDPSPDEKYILI 348 (953)
Q Consensus 271 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~l~~~~~-~g~~~~-l~~~~~~~~~~~SpDG~~l~~ 348 (953)
....++.++. +++... +........++|+|||++|++
T Consensus 135 -----------------------------------------~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~ 173 (300)
T TIGR03866 135 -----------------------------------------TTNMAHFIDTKTYEIVDNVLVDQRPRFAEFTADGKELWV 173 (300)
T ss_pred -----------------------------------------CCCeEEEEeCCCCeEEEEEEcCCCccEEEECCCCCEEEE
Confidence 0112344566 554322 222234456889999999887
Q ss_pred EEecCCccccccCCCCCcceEEEeccCceE-EEeccCCCcccCCccccccccCccceeeccCCCCceEEEEeccCCCccc
Q 002209 349 SSIHRPYSFIVPCGRFPRQVGVWTTDGIFV-RELCDLPLAEDIPIAFNSVRKGMRSINWRSDKPSTLYWAETQDGGDAKV 427 (953)
Q Consensus 349 ~~~~~~~~~~~~~~~~~~~i~~~d~~g~~~-~~l~~~~~~~~~p~~~~~~~~~~~~~~wspDg~~i~~~~~~~~~~~~~~ 427 (953)
.... .+.+.+||+++++. +.+.... ....+ .......+.|+|||+.++...
T Consensus 174 ~~~~------------~~~v~i~d~~~~~~~~~~~~~~-~~~~~-----~~~~~~~i~~s~dg~~~~~~~---------- 225 (300)
T TIGR03866 174 SSEI------------GGTVSVIDVATRKVIKKITFEI-PGVHP-----EAVQPVGIKLTKDGKTAFVAL---------- 225 (300)
T ss_pred EcCC------------CCEEEEEEcCcceeeeeeeecc-ccccc-----ccCCccceEECCCCCEEEEEc----------
Confidence 6521 23799999986543 3333211 00000 001123588999999754431
Q ss_pred ccccCCeEEEEecCCCCCCCceEEeecccccCCeeeccCCceEEEEEecccCceEEEEEcCCCC
Q 002209 428 EVTPRDIIYTQQAEPVQGEGPEILHKLDLRYGGISWCDDSLALVYESWYKTRRTRTWVISPGSK 491 (953)
Q Consensus 428 ~~~~~~~l~~~d~~~~~g~~~~~l~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~l~~~d~~~~ 491 (953)
...+.+.++|. ..++..........+..++|+|||++|+.+...+ + .|.++|+.++
T Consensus 226 --~~~~~i~v~d~---~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~~~~~-~--~i~v~d~~~~ 281 (300)
T TIGR03866 226 --GPANRVAVVDA---KTYEVLDYLLVGQRVWQLAFTPDEKYLLTTNGVS-N--DVSVIDVAAL 281 (300)
T ss_pred --CCCCeEEEEEC---CCCcEEEEEEeCCCcceEEECCCCCEEEEEcCCC-C--eEEEEECCCC
Confidence 22346888886 4444433223334567899999999987664322 2 6888888875
No 101
>PRK11071 esterase YqiA; Provisional
Probab=99.41 E-value=1.2e-11 Score=122.95 Aligned_cols=149 Identities=11% Similarity=0.025 Sum_probs=94.4
Q ss_pred cCcEEEEcCCCCCCCCCChhhhhhhHHHHHHHHHHHHHHHHHcCCCCCCcEEEEEeChHHHHHHHHHHhCCCcccEEEEc
Q 002209 711 RGFAILGGPTTPIIGEGDEEANDRFVEQLVACAEAAVEEVVRRGVAHPSKIAVGGHSYGAFMTANLLAHAPHLFCCGIAR 790 (953)
Q Consensus 711 ~G~~V~~~~~~~~~G~G~~~~~~~~~~~~~~D~~~~~~~l~~~~~~d~~~i~l~G~S~GG~~a~~~a~~~p~~~~a~v~~ 790 (953)
.+|.|++++. .|++ . +..+.++.+.+.. +.+++.++|+|+||++++.++.++|. + +|++
T Consensus 31 ~~~~v~~~dl---~g~~---------~----~~~~~l~~l~~~~--~~~~~~lvG~S~Gg~~a~~~a~~~~~--~-~vl~ 89 (190)
T PRK11071 31 PDIEMIVPQL---PPYP---------A----DAAELLESLVLEH--GGDPLGLVGSSLGGYYATWLSQCFML--P-AVVV 89 (190)
T ss_pred CCCeEEeCCC---CCCH---------H----HHHHHHHHHHHHc--CCCCeEEEEECHHHHHHHHHHHHcCC--C-EEEE
Confidence 3799999655 3442 1 2333344444432 23589999999999999999999973 3 4667
Q ss_pred ccCCCCCC-C-------CcCcccccchhh--hhHHHHHhcCcccccCCCCCcEEEEEeCCCCCCCCchHHHHHHHHHHHh
Q 002209 791 SGAYNRTL-T-------PFGFQNEDRTLW--EATSTYVEMSPFMSANKLKKPILLVHGEEDNNSGTLTMQSDRFFNALKG 860 (953)
Q Consensus 791 ~~~~d~~~-~-------~~~~~~~~~~~~--~~~~~~~~~sp~~~~~~i~~P~Li~~G~~D~~v~~~~~~~~~~~~~l~~ 860 (953)
+|..+... . ...+..+ ...+ ...+......+.. +. ...|++++||++|++|| +..+.++++..
T Consensus 90 ~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~d~~~~~~~~-i~-~~~~v~iihg~~De~V~--~~~a~~~~~~~-- 162 (190)
T PRK11071 90 NPAVRPFELLTDYLGENENPYTGQ-QYVLESRHIYDLKVMQIDP-LE-SPDLIWLLQQTGDEVLD--YRQAVAYYAAC-- 162 (190)
T ss_pred CCCCCHHHHHHHhcCCcccccCCC-cEEEcHHHHHHHHhcCCcc-CC-ChhhEEEEEeCCCCcCC--HHHHHHHHHhc--
Confidence 77655200 0 0000000 0111 1122223233222 33 67789999999999999 99999999843
Q ss_pred CCCcEEEEEeCCCCccCCCcccHHHHHHHHHHHHH
Q 002209 861 HGALCRLVILPFESHGYAARESIMHVLWETDRWLQ 895 (953)
Q Consensus 861 ~g~~~~~~~~~~~~H~~~~~~~~~~~~~~i~~fl~ 895 (953)
++++++|++|.+... +.+.+.+.+|+.
T Consensus 163 -----~~~~~~ggdH~f~~~---~~~~~~i~~fl~ 189 (190)
T PRK11071 163 -----RQTVEEGGNHAFVGF---ERYFNQIVDFLG 189 (190)
T ss_pred -----ceEEECCCCcchhhH---HHhHHHHHHHhc
Confidence 566789999998543 677888888864
No 102
>TIGR01836 PHA_synth_III_C poly(R)-hydroxyalkanoic acid synthase, class III, PhaC subunit. This model represents the PhaC subunit of a heterodimeric form of polyhydroxyalkanoic acid (PHA) synthase. Excepting the PhaC of Bacillus megaterium (which needs PhaR), all members require PhaE (TIGR01834) for activity and are designated class III. This enzyme builds ester polymers for carbon and energy storage that accumulate in inclusions, and both this enzyme and the depolymerase associate with the inclusions. Class III enzymes polymerize short-chain-length hydroxyalkanoates.
Probab=99.41 E-value=1.4e-11 Score=136.28 Aligned_cols=184 Identities=14% Similarity=0.099 Sum_probs=121.7
Q ss_pred hHHHHHHHcCcEEEEcCCCCCCCCCChhhhhhhHHHHHHHHHHHHHHHHHcCCCCCCcEEEEEeChHHHHHHHHHHhCCC
Q 002209 703 TSVLLWLARGFAILGGPTTPIIGEGDEEANDRFVEQLVACAEAAVEEVVRRGVAHPSKIAVGGHSYGAFMTANLLAHAPH 782 (953)
Q Consensus 703 ~~~~~la~~G~~V~~~~~~~~~G~G~~~~~~~~~~~~~~D~~~~~~~l~~~~~~d~~~i~l~G~S~GG~~a~~~a~~~p~ 782 (953)
..+..|+++||.|+.+|. +|.|.+............|+.++++++.+.. ..+++.++||||||.+++.+++.+|+
T Consensus 85 ~~~~~L~~~G~~V~~~D~---~g~g~s~~~~~~~d~~~~~~~~~v~~l~~~~--~~~~i~lvGhS~GG~i~~~~~~~~~~ 159 (350)
T TIGR01836 85 SLVRGLLERGQDVYLIDW---GYPDRADRYLTLDDYINGYIDKCVDYICRTS--KLDQISLLGICQGGTFSLCYAALYPD 159 (350)
T ss_pred hHHHHHHHCCCeEEEEeC---CCCCHHHhcCCHHHHHHHHHHHHHHHHHHHh--CCCcccEEEECHHHHHHHHHHHhCch
Confidence 457788999999999554 4555543333333333456888899998764 24689999999999999999999999
Q ss_pred cccEEEEcccCCCCCCCC-----c-------------C-ccc-----------ccchhh----------hhH---HHHH-
Q 002209 783 LFCCGIARSGAYNRTLTP-----F-------------G-FQN-----------EDRTLW----------EAT---STYV- 818 (953)
Q Consensus 783 ~~~a~v~~~~~~d~~~~~-----~-------------~-~~~-----------~~~~~~----------~~~---~~~~- 818 (953)
.++++|++++..+..... + + ... .....| .+. +.+.
T Consensus 160 ~v~~lv~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~f~~l~p~~~~~~~~~~~~~~~~~~~~~~~~~~ 239 (350)
T TIGR01836 160 KIKNLVTMVTPVDFETPGNMLSNWARHVDIDLAVDTMGNIPGELLNLTFLMLKPFSLGYQKYVNLVDILEDERKVENFLR 239 (350)
T ss_pred heeeEEEeccccccCCCCchhhhhccccCHHHHHHhcCCCCHHHHHHHHHhcCcchhhhHHHHHHHHhcCChHHHHHHHH
Confidence 999999998876632110 0 0 000 000000 000 0000
Q ss_pred --h--cC--c-----------------------------ccccCCCCCcEEEEEeCCCCCCCCchHHHHHHHHHHHhCCC
Q 002209 819 --E--MS--P-----------------------------FMSANKLKKPILLVHGEEDNNSGTLTMQSDRFFNALKGHGA 863 (953)
Q Consensus 819 --~--~s--p-----------------------------~~~~~~i~~P~Li~~G~~D~~v~~~~~~~~~~~~~l~~~g~ 863 (953)
. .+ + ...+.++++|+|+++|++|..+| +..+..+++.+.. .
T Consensus 240 ~~~w~~d~~~~~~~~~~~~~~~~~~~n~l~~g~~~~~~~~~~l~~i~~Pvliv~G~~D~i~~--~~~~~~~~~~~~~--~ 315 (350)
T TIGR01836 240 MEKWIFDSPDQAGEAFRQFVKDFYQQNGLINGEVEIGGRKVDLKNIKMPILNIYAERDHLVP--PDASKALNDLVSS--E 315 (350)
T ss_pred HHHHhcCCcCccHHHHHHHHHHHHhcCcccCCeeEECCEEccHHhCCCCeEEEecCCCCcCC--HHHHHHHHHHcCC--C
Confidence 0 00 0 01244678999999999999998 8888888887754 4
Q ss_pred cEEEEEeCCCCccCC--CcccHHHHHHHHHHHHHH
Q 002209 864 LCRLVILPFESHGYA--ARESIMHVLWETDRWLQK 896 (953)
Q Consensus 864 ~~~~~~~~~~~H~~~--~~~~~~~~~~~i~~fl~~ 896 (953)
+++++++++ ||... .....+.++..+.+||.+
T Consensus 316 ~~~~~~~~~-gH~~~~~~~~~~~~v~~~i~~wl~~ 349 (350)
T TIGR01836 316 DYTELSFPG-GHIGIYVSGKAQKEVPPAIGKWLQA 349 (350)
T ss_pred CeEEEEcCC-CCEEEEECchhHhhhhHHHHHHHHh
Confidence 578888885 77642 222357888999999875
No 103
>PLN02894 hydrolase, alpha/beta fold family protein
Probab=99.40 E-value=2.3e-11 Score=136.24 Aligned_cols=203 Identities=16% Similarity=0.106 Sum_probs=120.3
Q ss_pred ccEEEEeCCCCCcCcCCCCcccCCCCCCCCccchHHHHHHHcCcEEEEcCCCCCCCCCChhhhhh---hHHHHHHHHHHH
Q 002209 670 LPCLFWSYPGEFKSKDAAGQVRGSPNEFPRIGSTSVLLWLARGFAILGGPTTPIIGEGDEEANDR---FVEQLVACAEAA 746 (953)
Q Consensus 670 ~P~vv~~hGg~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~G~~V~~~~~~~~~G~G~~~~~~~---~~~~~~~D~~~~ 746 (953)
.|+||++||.+... ..+ ......|+ ++|.|+. +|.+|+|.+..... ........+.+.
T Consensus 105 ~p~vvllHG~~~~~--------------~~~-~~~~~~L~-~~~~vi~---~D~rG~G~S~~~~~~~~~~~~~~~~~~~~ 165 (402)
T PLN02894 105 APTLVMVHGYGASQ--------------GFF-FRNFDALA-SRFRVIA---IDQLGWGGSSRPDFTCKSTEETEAWFIDS 165 (402)
T ss_pred CCEEEEECCCCcch--------------hHH-HHHHHHHH-hCCEEEE---ECCCCCCCCCCCCcccccHHHHHHHHHHH
Confidence 68899999953110 001 12233444 4699999 55567777643321 111111122222
Q ss_pred -HHHHHHcCCCCCCcEEEEEeChHHHHHHHHHHhCCCcccEEEEcccCCCCCCC-C-----------c-----------C
Q 002209 747 -VEEVVRRGVAHPSKIAVGGHSYGAFMTANLLAHAPHLFCCGIARSGAYNRTLT-P-----------F-----------G 802 (953)
Q Consensus 747 -~~~l~~~~~~d~~~i~l~G~S~GG~~a~~~a~~~p~~~~a~v~~~~~~d~~~~-~-----------~-----------~ 802 (953)
.+++... +.+++.|+||||||++++.++.++|++++++|+++|..-.... . + .
T Consensus 166 i~~~~~~l---~~~~~~lvGhS~GG~la~~~a~~~p~~v~~lvl~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 242 (402)
T PLN02894 166 FEEWRKAK---NLSNFILLGHSFGGYVAAKYALKHPEHVQHLILVGPAGFSSESDDKSEWLTKFRATWKGAVLNHLWESN 242 (402)
T ss_pred HHHHHHHc---CCCCeEEEEECHHHHHHHHHHHhCchhhcEEEEECCccccCCcchhHHHHhhcchhHHHHHHHHHhhcC
Confidence 2333332 3468999999999999999999999999999988764211000 0 0 0
Q ss_pred ccc--------c------cchh--------------hhhHHHHH--------------------------hcCcc-cccC
Q 002209 803 FQN--------E------DRTL--------------WEATSTYV--------------------------EMSPF-MSAN 827 (953)
Q Consensus 803 ~~~--------~------~~~~--------------~~~~~~~~--------------------------~~sp~-~~~~ 827 (953)
+.. . .... .+..+.+. ...+. ..+.
T Consensus 243 ~~p~~~~~~~gp~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 322 (402)
T PLN02894 243 FTPQKIIRGLGPWGPNLVRRYTTARFGAHSTGDILSEEESKLLTDYVYHTLAAKASGELCLKYIFSFGAFARKPLLESAS 322 (402)
T ss_pred CCHHHHHHhccchhHHHHHHHHHHHhhhcccccccCcchhhHHHHHHHHhhcCCCchHHHHHHhccCchhhcchHhhhcc
Confidence 000 0 0000 00000000 01111 2356
Q ss_pred CCCCcEEEEEeCCCCCCCCchHHHHHHHHHHHhCCCcEEEEEeCCCCccCCCcccHHHHHHHHHHHHHHhccCC
Q 002209 828 KLKKPILLVHGEEDNNSGTLTMQSDRFFNALKGHGALCRLVILPFESHGYAARESIMHVLWETDRWLQKYCVSN 901 (953)
Q Consensus 828 ~i~~P~Li~~G~~D~~v~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~H~~~~~~~~~~~~~~i~~fl~~~l~~~ 901 (953)
++++|+|+++|++|..+ +....++.+.+ +..+++++++++||.. ..++...+.+.+.+|++.++...
T Consensus 323 ~I~vP~liI~G~~D~i~---~~~~~~~~~~~---~~~~~~~~i~~aGH~~-~~E~P~~f~~~l~~~~~~~~~~~ 389 (402)
T PLN02894 323 EWKVPTTFIYGRHDWMN---YEGAVEARKRM---KVPCEIIRVPQGGHFV-FLDNPSGFHSAVLYACRKYLSPD 389 (402)
T ss_pred cCCCCEEEEEeCCCCCC---cHHHHHHHHHc---CCCCcEEEeCCCCCee-eccCHHHHHHHHHHHHHHhccCC
Confidence 78899999999999765 35555554443 3347899999999976 46778889999999999998654
No 104
>PRK03592 haloalkane dehalogenase; Provisional
Probab=99.40 E-value=1.3e-11 Score=133.60 Aligned_cols=211 Identities=14% Similarity=0.104 Sum_probs=129.8
Q ss_pred CCCcEEEEEEEcCCCCCCCCCCCccEEEEeCCCCCcCcCCCCcccCCCCCCCCccchHHHHHHHcCcEEEEcCCCCCCCC
Q 002209 647 KDGVQLSATLYLPPGYDPSKDGPLPCLFWSYPGEFKSKDAAGQVRGSPNEFPRIGSTSVLLWLARGFAILGGPTTPIIGE 726 (953)
Q Consensus 647 ~dg~~~~~~l~~P~~~~~~~~~~~P~vv~~hGg~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~G~~V~~~~~~~~~G~ 726 (953)
.+|.++....+- . .|.||++||.+... ..| ...+..|++++ .|++ .|..|+
T Consensus 14 ~~g~~i~y~~~G--------~--g~~vvllHG~~~~~-----------~~w----~~~~~~L~~~~-~via---~D~~G~ 64 (295)
T PRK03592 14 VLGSRMAYIETG--------E--GDPIVFLHGNPTSS-----------YLW----RNIIPHLAGLG-RCLA---PDLIGM 64 (295)
T ss_pred ECCEEEEEEEeC--------C--CCEEEEECCCCCCH-----------HHH----HHHHHHHhhCC-EEEE---EcCCCC
Confidence 377776654431 1 36799999964211 011 13344566665 9999 455688
Q ss_pred CChhhhh--hhHHHHHHHHHHHHHHHHHcCCCCCCcEEEEEeChHHHHHHHHHHhCCCcccEEEEcccCCCCCC---CC-
Q 002209 727 GDEEAND--RFVEQLVACAEAAVEEVVRRGVAHPSKIAVGGHSYGAFMTANLLAHAPHLFCCGIARSGAYNRTL---TP- 800 (953)
Q Consensus 727 G~~~~~~--~~~~~~~~D~~~~~~~l~~~~~~d~~~i~l~G~S~GG~~a~~~a~~~p~~~~a~v~~~~~~d~~~---~~- 800 (953)
|.+.... .......+|+.+.++.+ +.+++.++|||+||.+++.++.++|++++++|+++++..... ..
T Consensus 65 G~S~~~~~~~~~~~~a~dl~~ll~~l------~~~~~~lvGhS~Gg~ia~~~a~~~p~~v~~lil~~~~~~~~~~~~~~~ 138 (295)
T PRK03592 65 GASDKPDIDYTFADHARYLDAWFDAL------GLDDVVLVGHDWGSALGFDWAARHPDRVRGIAFMEAIVRPMTWDDFPP 138 (295)
T ss_pred CCCCCCCCCCCHHHHHHHHHHHHHHh------CCCCeEEEEECHHHHHHHHHHHhChhheeEEEEECCCCCCcchhhcch
Confidence 8775432 23455566666665554 236899999999999999999999999999999886422100 00
Q ss_pred --------cCccc--c------c--------c----hhh-hhHHHHH-----------------hcCc------------
Q 002209 801 --------FGFQN--E------D--------R----TLW-EATSTYV-----------------EMSP------------ 822 (953)
Q Consensus 801 --------~~~~~--~------~--------~----~~~-~~~~~~~-----------------~~sp------------ 822 (953)
+.... . . . ... +....+. ...+
T Consensus 139 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 218 (295)
T PRK03592 139 AVRELFQALRSPGEGEEMVLEENVFIERVLPGSILRPLSDEEMAVYRRPFPTPESRRPTLSWPRELPIDGEPADVVALVE 218 (295)
T ss_pred hHHHHHHHHhCcccccccccchhhHHhhcccCcccccCCHHHHHHHHhhcCCchhhhhhhhhhhhcCCCCcchhhHhhhh
Confidence 00000 0 0 0 000 0000000 0000
Q ss_pred --ccccCCCCCcEEEEEeCCCCCCCCchHHHHHHHHHHHhCCCcEEEEEeCCCCccCCCcccHHHHHHHHHHHHHHhc
Q 002209 823 --FMSANKLKKPILLVHGEEDNNSGTLTMQSDRFFNALKGHGALCRLVILPFESHGYAARESIMHVLWETDRWLQKYC 898 (953)
Q Consensus 823 --~~~~~~i~~P~Li~~G~~D~~v~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~H~~~~~~~~~~~~~~i~~fl~~~l 898 (953)
...+.++++|+|++||++|..++ +....++...+.. ..++++++++||... .+..+.+.+.+.+|+.+..
T Consensus 219 ~~~~~l~~i~~P~lii~G~~D~~~~--~~~~~~~~~~~~~---~~~~~~i~~~gH~~~-~e~p~~v~~~i~~fl~~~~ 290 (295)
T PRK03592 219 EYAQWLATSDVPKLLINAEPGAILT--TGAIRDWCRSWPN---QLEITVFGAGLHFAQ-EDSPEEIGAAIAAWLRRLR 290 (295)
T ss_pred HhHHHhccCCCCeEEEeccCCcccC--cHHHHHHHHHhhh---hcceeeccCcchhhh-hcCHHHHHHHHHHHHHHhc
Confidence 01235679999999999999985 5555555444332 257889999999875 5678889999999998753
No 105
>KOG0315 consensus G-protein beta subunit-like protein (contains WD40 repeats) [General function prediction only]
Probab=99.40 E-value=6.9e-11 Score=113.42 Aligned_cols=271 Identities=14% Similarity=0.138 Sum_probs=175.1
Q ss_pred eceEEEEccCCCCCCceeeeecCCCCCcccceEeccCCCeEEEEEeeccccCCCCcceEEEEECCCCceeecccCCCccc
Q 002209 163 TGIGIHQLFPDGKLGQEIEIQGFPDGAKLNFVTWSQDGKHLAFSIRIDAEDSSSSKLRVWVADVDTGKARPLFQSPDIYL 242 (953)
Q Consensus 163 ~~i~i~~~~~~g~~~~~~~l~~~~~~~~~~~~~wSPDG~~laf~~~~~~~~~~~~~~~l~~~d~~~g~~~~lt~~~~~~~ 242 (953)
..|++|...+ |...+--.++++ .++....+||++.||-.. ..+|.++|+.++.+.++...+..
T Consensus 20 hTIRfWqa~t----G~C~rTiqh~ds-qVNrLeiTpdk~~LAaa~----------~qhvRlyD~~S~np~Pv~t~e~h-- 82 (311)
T KOG0315|consen 20 HTIRFWQALT----GICSRTIQHPDS-QVNRLEITPDKKDLAAAG----------NQHVRLYDLNSNNPNPVATFEGH-- 82 (311)
T ss_pred ceeeeeehhc----CeEEEEEecCcc-ceeeEEEcCCcchhhhcc----------CCeeEEEEccCCCCCceeEEecc--
Confidence 4788998854 443322224433 788999999999998753 77899999999887666544432
Q ss_pred cccccceEEecCCeEEEEEecCCCCCCCCCCCCCCCCceeecCCCccccchhhhhhcCCcchhhhhhhhccceEEEEEc-
Q 002209 243 NAIFDNFVWVNNSTLLVCTIPLLRGDPPKKPLVPLGPKMQSNEKRDIIQVRTFQDLLKDEYDEDLFDYYATTQLVLVSL- 321 (953)
Q Consensus 243 ~~~~~~~~wspDg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~l~~~~~- 321 (953)
+.-+..+.|--||++++... .| ++-.|| |+
T Consensus 83 ~kNVtaVgF~~dgrWMyTgs----------------------------------------eD-------gt~kIW--dlR 113 (311)
T KOG0315|consen 83 TKNVTAVGFQCDGRWMYTGS----------------------------------------ED-------GTVKIW--DLR 113 (311)
T ss_pred CCceEEEEEeecCeEEEecC----------------------------------------CC-------ceEEEE--ecc
Confidence 11266888999999999651 11 233344 44
Q ss_pred CCceeEeCCC-CcccccccCCCCcEEEEEEecCCccccccCCCCCcceEEEeccCc-eEEEeccCCCcccCCcccccccc
Q 002209 322 DGTVKEIGPP-AVYTSLDPSPDEKYILISSIHRPYSFIVPCGRFPRQVGVWTTDGI-FVRELCDLPLAEDIPIAFNSVRK 399 (953)
Q Consensus 322 ~g~~~~l~~~-~~~~~~~~SpDG~~l~~~~~~~~~~~~~~~~~~~~~i~~~d~~g~-~~~~l~~~~~~~~~p~~~~~~~~ 399 (953)
.-..+++... ..+..+.+.|+-..|+.... .++|++||+... -..++...+. .
T Consensus 114 ~~~~qR~~~~~spVn~vvlhpnQteLis~dq-------------sg~irvWDl~~~~c~~~liPe~~------------~ 168 (311)
T KOG0315|consen 114 SLSCQRNYQHNSPVNTVVLHPNQTELISGDQ-------------SGNIRVWDLGENSCTHELIPEDD------------T 168 (311)
T ss_pred CcccchhccCCCCcceEEecCCcceEEeecC-------------CCcEEEEEccCCccccccCCCCC------------c
Confidence 4334444433 67788899998877776542 349999999754 3333333221 3
Q ss_pred CccceeeccCCCCceEEEEeccCCCcccccccCCeEEEEecCCCCCCC---ceEE---eecccccCCeeeccCCceEEEE
Q 002209 400 GMRSINWRSDKPSTLYWAETQDGGDAKVEVTPRDIIYTQQAEPVQGEG---PEIL---HKLDLRYGGISWCDDSLALVYE 473 (953)
Q Consensus 400 ~~~~~~wspDg~~i~~~~~~~~~~~~~~~~~~~~~l~~~d~~~~~g~~---~~~l---~~~~~~~~~~~~SpDg~~l~~~ 473 (953)
.+++++..|||+.++-. ..++..|+|++ ..... .+.+ ..+.+......+|||+++|+..
T Consensus 169 ~i~sl~v~~dgsml~a~-------------nnkG~cyvW~l--~~~~~~s~l~P~~k~~ah~~~il~C~lSPd~k~lat~ 233 (311)
T KOG0315|consen 169 SIQSLTVMPDGSMLAAA-------------NNKGNCYVWRL--LNHQTASELEPVHKFQAHNGHILRCLLSPDVKYLATC 233 (311)
T ss_pred ceeeEEEcCCCcEEEEe-------------cCCccEEEEEc--cCCCccccceEhhheecccceEEEEEECCCCcEEEee
Confidence 34788999999987766 55778999997 32211 2222 2334455567899999999988
Q ss_pred EecccCceEEEEEcCCCCCCCcEEeecCCCccccCCCCCCCeEeccCCCEEEEEeeeccCCCcEEEEecCCCCCCCCCCe
Q 002209 474 SWYKTRRTRTWVISPGSKDVAPRILFDRSSEDVYSDPGSPMMRRTSTGTYVIAKIKKENDEGTYILLNGNGATPEGNIPF 553 (953)
Q Consensus 474 ~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~SpDG~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 553 (953)
+.+.+. +||..+.- .+.....+.....++. -.||-||++|+....+ ..
T Consensus 234 ssdktv--~iwn~~~~---~kle~~l~gh~rWvWd------c~FS~dg~YlvTassd---------------------~~ 281 (311)
T KOG0315|consen 234 SSDKTV--KIWNTDDF---FKLELVLTGHQRWVWD------CAFSADGEYLVTASSD---------------------HT 281 (311)
T ss_pred cCCceE--EEEecCCc---eeeEEEeecCCceEEe------eeeccCccEEEecCCC---------------------Cc
Confidence 766643 55655432 1223333333333333 5699999999877632 24
Q ss_pred EEEEECCCCceEEEeccC
Q 002209 554 LDLFDINTGSKERIWESD 571 (953)
Q Consensus 554 L~~~d~~~~~~~~l~~~~ 571 (953)
..+||+..++..+.+.+.
T Consensus 282 ~rlW~~~~~k~v~qy~gh 299 (311)
T KOG0315|consen 282 ARLWDLSAGKEVRQYQGH 299 (311)
T ss_pred eeecccccCceeeecCCc
Confidence 778999999887777654
No 106
>KOG0273 consensus Beta-transducin family (WD-40 repeat) protein [Chromatin structure and dynamics]
Probab=99.39 E-value=6.9e-11 Score=123.24 Aligned_cols=279 Identities=12% Similarity=0.123 Sum_probs=174.8
Q ss_pred hhcCCCCCCceecCCCCEEEEEecCCCCCccccccccceeceEEecCCCCCCcceeeeeceEEEEccCCCCCCceeeeec
Q 002209 105 IVDAPPLPALSFSPQRDKILFLKRRALPPLEELARPEEKLAGLRIDGKCNTRSRMSFYTGIGIHQLFPDGKLGQEIEIQG 184 (953)
Q Consensus 105 ~~~~~~~~~~~~SPDG~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~i~~~~~~g~~~~~~~l~~ 184 (953)
......+..++|+.||..||+.+.+ +.+.||+. +| .....+..
T Consensus 232 ~~~nkdVT~L~Wn~~G~~LatG~~~---------------------------------G~~riw~~--~G--~l~~tl~~ 274 (524)
T KOG0273|consen 232 VPSNKDVTSLDWNNDGTLLATGSED---------------------------------GEARIWNK--DG--NLISTLGQ 274 (524)
T ss_pred CCccCCcceEEecCCCCeEEEeecC---------------------------------cEEEEEec--Cc--hhhhhhhc
Confidence 3345678899999999999998875 35689987 44 22233322
Q ss_pred CCCCCcccceEeccCCCeEEEEEeeccccCCCCcceEEEEECCCCceeecccCCCccccccccceEEecCCeEEEEEecC
Q 002209 185 FPDGAKLNFVTWSQDGKHLAFSIRIDAEDSSSSKLRVWVADVDTGKARPLFQSPDIYLNAIFDNFVWVNNSTLLVCTIPL 264 (953)
Q Consensus 185 ~~~~~~~~~~~wSPDG~~laf~~~~~~~~~~~~~~~l~~~d~~~g~~~~lt~~~~~~~~~~~~~~~wspDg~~l~~~~~~ 264 (953)
+.+.+....|+-+|.+|+-.. -...+-++|.-+|+..+........ .-.+.|-.+.+..-..
T Consensus 275 --HkgPI~slKWnk~G~yilS~~---------vD~ttilwd~~~g~~~q~f~~~s~~----~lDVdW~~~~~F~ts~--- 336 (524)
T KOG0273|consen 275 --HKGPIFSLKWNKKGTYILSGG---------VDGTTILWDAHTGTVKQQFEFHSAP----ALDVDWQSNDEFATSS--- 336 (524)
T ss_pred --cCCceEEEEEcCCCCEEEecc---------CCccEEEEeccCceEEEeeeeccCC----ccceEEecCceEeecC---
Confidence 224799999999999999843 3556778888888887665544321 2367887665533322
Q ss_pred CCCCCCCCCCCCCCCceeecCCCccccchhhhhhcCCcchhhhhhhhccceEEEEEc--CCceeEeCCC-CcccccccCC
Q 002209 265 LRGDPPKKPLVPLGPKMQSNEKRDIIQVRTFQDLLKDEYDEDLFDYYATTQLVLVSL--DGTVKEIGPP-AVYTSLDPSP 341 (953)
Q Consensus 265 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~l~~~~~--~g~~~~l~~~-~~~~~~~~Sp 341 (953)
..+.|+++-+ ++....+... +.+..+.|.|
T Consensus 337 -----------------------------------------------td~~i~V~kv~~~~P~~t~~GH~g~V~alk~n~ 369 (524)
T KOG0273|consen 337 -----------------------------------------------TDGCIHVCKVGEDRPVKTFIGHHGEVNALKWNP 369 (524)
T ss_pred -----------------------------------------------CCceEEEEEecCCCcceeeecccCceEEEEECC
Confidence 1133555555 4444444445 8888999999
Q ss_pred CCcEEEEEEecCCccccccCCCCCcceEEEecc-CceEEEeccCCCcccCCccccccccCccceeeccCCCCceEEEEec
Q 002209 342 DEKYILISSIHRPYSFIVPCGRFPRQVGVWTTD-GIFVRELCDLPLAEDIPIAFNSVRKGMRSINWRSDKPSTLYWAETQ 420 (953)
Q Consensus 342 DG~~l~~~~~~~~~~~~~~~~~~~~~i~~~d~~-g~~~~~l~~~~~~~~~p~~~~~~~~~~~~~~wspDg~~i~~~~~~~ 420 (953)
-|+.|+..+.+. ++.+|... +.....+..+ ...+..+.|||+|...- -.
T Consensus 370 tg~LLaS~SdD~-------------TlkiWs~~~~~~~~~l~~H-------------skei~t~~wsp~g~v~~----n~ 419 (524)
T KOG0273|consen 370 TGSLLASCSDDG-------------TLKIWSMGQSNSVHDLQAH-------------SKEIYTIKWSPTGPVTS----NP 419 (524)
T ss_pred CCceEEEecCCC-------------eeEeeecCCCcchhhhhhh-------------ccceeeEeecCCCCccC----CC
Confidence 999999888554 88888864 3222223222 13346788999987310 00
Q ss_pred cCCCcccccccCCeEEEEecCCCCCCCceEEeecccccCCeeeccCCceEEEEEecccCceEEEEEcCCCCCCCcEEeec
Q 002209 421 DGGDAKVEVTPRDIIYTQQAEPVQGEGPEILHKLDLRYGGISWCDDSLALVYESWYKTRRTRTWVISPGSKDVAPRILFD 500 (953)
Q Consensus 421 ~~~~~~~~~~~~~~l~~~d~~~~~g~~~~~l~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~l~~~d~~~~~~~~~~~~~ 500 (953)
..+...........|.+||+ ..|.....++++...+.+++|||||++|++.+.++ .+.+++..++ +...-.
T Consensus 420 ~~~~~l~sas~dstV~lwdv--~~gv~i~~f~kH~~pVysvafS~~g~ylAsGs~dg----~V~iws~~~~--~l~~s~- 490 (524)
T KOG0273|consen 420 NMNLMLASASFDSTVKLWDV--ESGVPIHTLMKHQEPVYSVAFSPNGRYLASGSLDG----CVHIWSTKTG--KLVKSY- 490 (524)
T ss_pred cCCceEEEeecCCeEEEEEc--cCCceeEeeccCCCceEEEEecCCCcEEEecCCCC----eeEeccccch--heeEee-
Confidence 01111122244567888986 33444455678888999999999999999986554 3444454443 111111
Q ss_pred CCCccccCCCCCCCeEeccCCCEEEEEeee
Q 002209 501 RSSEDVYSDPGSPMMRRTSTGTYVIAKIKK 530 (953)
Q Consensus 501 ~~~~~~~~~~~~p~~~~SpDG~~l~~~~~~ 530 (953)
.....++. +.|+-+|.+|.....+
T Consensus 491 ~~~~~Ife------l~Wn~~G~kl~~~~sd 514 (524)
T KOG0273|consen 491 QGTGGIFE------LCWNAAGDKLGACASD 514 (524)
T ss_pred cCCCeEEE------EEEcCCCCEEEEEecC
Confidence 11111222 8899999888777643
No 107
>KOG0279 consensus G protein beta subunit-like protein [Signal transduction mechanisms]
Probab=99.39 E-value=6.7e-11 Score=115.58 Aligned_cols=273 Identities=14% Similarity=0.078 Sum_probs=165.8
Q ss_pred CCCCceecCCCCEEEEEecCCCCCccccccccceeceEEecCCCCCCcceeeeeceEEEEccCCCC-CC-ceeeeecCCC
Q 002209 110 PLPALSFSPQRDKILFLKRRALPPLEELARPEEKLAGLRIDGKCNTRSRMSFYTGIGIHQLFPDGK-LG-QEIEIQGFPD 187 (953)
Q Consensus 110 ~~~~~~~SPDG~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~i~~~~~~g~-~~-~~~~l~~~~~ 187 (953)
++..+++.+.+..+++...+ +..+.+|++..|.. .+ ..++++++.
T Consensus 17 ~Vt~la~~~~~~~~l~sasr--------------------------------Dk~ii~W~L~~dd~~~G~~~r~~~GHs- 63 (315)
T KOG0279|consen 17 WVTALAIKIKNSDILVSASR--------------------------------DKTIIVWKLTSDDIKYGVPVRRLTGHS- 63 (315)
T ss_pred eEEEEEeecCCCceEEEccc--------------------------------ceEEEEEEeccCccccCceeeeeeccc-
Confidence 45567777777767666553 03568888865532 22 245665532
Q ss_pred CCcccceEeccCCCeEEEEEeeccccCCCCcceEEEEECCCCceeecccCCCccccccccceEEecCCeEEEEEecCCCC
Q 002209 188 GAKLNFVTWSQDGKHLAFSIRIDAEDSSSSKLRVWVADVDTGKARPLFQSPDIYLNAIFDNFVWVNNSTLLVCTIPLLRG 267 (953)
Q Consensus 188 ~~~~~~~~wSPDG~~laf~~~~~~~~~~~~~~~l~~~d~~~g~~~~lt~~~~~~~~~~~~~~~wspDg~~l~~~~~~~~~ 267 (953)
..+.....|+||++.+-.+ -+..|.++|+.+|+.++..-..... +-++++++|.+.|+..
T Consensus 64 -H~v~dv~~s~dg~~alS~s---------wD~~lrlWDl~~g~~t~~f~GH~~d----Vlsva~s~dn~qivSG------ 123 (315)
T KOG0279|consen 64 -HFVSDVVLSSDGNFALSAS---------WDGTLRLWDLATGESTRRFVGHTKD----VLSVAFSTDNRQIVSG------ 123 (315)
T ss_pred -eEecceEEccCCceEEecc---------ccceEEEEEecCCcEEEEEEecCCc----eEEEEecCCCceeecC------
Confidence 4789999999998765533 3568888999998877665544432 6789999999999954
Q ss_pred CCCCCCCCCCCCceeecCCCccccchhhhhhcCCcchhhhhhhhccceEEEEEc-CCceeEeCCC---CcccccccCCCC
Q 002209 268 DPPKKPLVPLGPKMQSNEKRDIIQVRTFQDLLKDEYDEDLFDYYATTQLVLVSL-DGTVKEIGPP---AVYTSLDPSPDE 343 (953)
Q Consensus 268 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~l~~~~~-~g~~~~l~~~---~~~~~~~~SpDG 343 (953)
.+| ..|-+++. ++-...+... +.++.+.|||..
T Consensus 124 ----------------------------------SrD---------kTiklwnt~g~ck~t~~~~~~~~WVscvrfsP~~ 160 (315)
T KOG0279|consen 124 ----------------------------------SRD---------KTIKLWNTLGVCKYTIHEDSHREWVSCVRFSPNE 160 (315)
T ss_pred ----------------------------------CCc---------ceeeeeeecccEEEEEecCCCcCcEEEEEEcCCC
Confidence 222 23445565 4433333322 678889999985
Q ss_pred c--EEEEEEecCCccccccCCCCCcceEEEeccCceEEEeccCCCcccCCccccccccCccceeeccCCCCceEEEEecc
Q 002209 344 K--YILISSIHRPYSFIVPCGRFPRQVGVWTTDGIFVRELCDLPLAEDIPIAFNSVRKGMRSINWRSDKPSTLYWAETQD 421 (953)
Q Consensus 344 ~--~l~~~~~~~~~~~~~~~~~~~~~i~~~d~~g~~~~~l~~~~~~~~~p~~~~~~~~~~~~~~wspDg~~i~~~~~~~~ 421 (953)
. .|+-.+ +.+.+.+||+++-+.+.... +....+..+++||||...++.
T Consensus 161 ~~p~Ivs~s-------------~DktvKvWnl~~~~l~~~~~------------gh~~~v~t~~vSpDGslcasG----- 210 (315)
T KOG0279|consen 161 SNPIIVSAS-------------WDKTVKVWNLRNCQLRTTFI------------GHSGYVNTVTVSPDGSLCASG----- 210 (315)
T ss_pred CCcEEEEcc-------------CCceEEEEccCCcchhhccc------------cccccEEEEEECCCCCEEecC-----
Confidence 3 333333 34589999999765543221 222344578999999977764
Q ss_pred CCCcccccccCCeEEEEecCCCCCCCceEEeecccccCCeeeccCCceEEEEEecccCceEEEEEcCCCCCCCcEEeecC
Q 002209 422 GGDAKVEVTPRDIIYTQQAEPVQGEGPEILHKLDLRYGGISWCDDSLALVYESWYKTRRTRTWVISPGSKDVAPRILFDR 501 (953)
Q Consensus 422 ~~~~~~~~~~~~~l~~~d~~~~~g~~~~~l~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~l~~~d~~~~~~~~~~~~~~ 501 (953)
+....+++||+ +.++.-.-......+.++.|||.--+|..+... .+.+.|++++. .+.+.
T Consensus 211 --------gkdg~~~LwdL---~~~k~lysl~a~~~v~sl~fspnrywL~~at~~-----sIkIwdl~~~~----~v~~l 270 (315)
T KOG0279|consen 211 --------GKDGEAMLWDL---NEGKNLYSLEAFDIVNSLCFSPNRYWLCAATAT-----SIKIWDLESKA----VVEEL 270 (315)
T ss_pred --------CCCceEEEEEc---cCCceeEeccCCCeEeeEEecCCceeEeeccCC-----ceEEEeccchh----hhhhc
Confidence 45678999997 333332222344456789999987776655322 24444554431 11111
Q ss_pred CC----c-cccCCCCCCCeEeccCCCEEEEEe
Q 002209 502 SS----E-DVYSDPGSPMMRRTSTGTYVIAKI 528 (953)
Q Consensus 502 ~~----~-~~~~~~~~p~~~~SpDG~~l~~~~ 528 (953)
.. . ...+.+..-.++||+||.+|+...
T Consensus 271 ~~d~~g~s~~~~~~~clslaws~dG~tLf~g~ 302 (315)
T KOG0279|consen 271 KLDGIGPSSKAGDPICLSLAWSADGQTLFAGY 302 (315)
T ss_pred cccccccccccCCcEEEEEEEcCCCcEEEeee
Confidence 10 0 000111112278999999998775
No 108
>PRK10439 enterobactin/ferric enterobactin esterase; Provisional
Probab=99.38 E-value=5.6e-11 Score=131.88 Aligned_cols=205 Identities=14% Similarity=0.087 Sum_probs=127.6
Q ss_pred eEEEEEEcC-CCcEEEEEEEcCCCCCCCCCCCccEEEEeCCCCCcCcCCCCcccCCCCCCCCccchHHHHHHHcC----c
Q 002209 639 KELIKYQRK-DGVQLSATLYLPPGYDPSKDGPLPCLFWSYPGEFKSKDAAGQVRGSPNEFPRIGSTSVLLWLARG----F 713 (953)
Q Consensus 639 ~~~~~~~~~-dg~~~~~~l~~P~~~~~~~~~~~P~vv~~hGg~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~G----~ 713 (953)
.+.+++.+. -|.+...++|+|+++. . .++|+|+++||..+... . ........|.++| +
T Consensus 180 ~~~~~~~S~~Lg~~r~v~VY~P~~y~-~--~~~PvlyllDG~~w~~~------------~--~~~~~ld~li~~g~i~P~ 242 (411)
T PRK10439 180 AKEIIWKSERLGNSRRVWIYTTGDAA-P--EERPLAILLDGQFWAES------------M--PVWPALDSLTHRGQLPPA 242 (411)
T ss_pred eEEEEEEccccCCceEEEEEECCCCC-C--CCCCEEEEEECHHhhhc------------C--CHHHHHHHHHHcCCCCce
Confidence 455566543 4667889999999876 2 35999999999642210 0 0112344566666 4
Q ss_pred EEEEcCCCCCCCCCChh-hhhhhHHHHHHHHHHHHHHHHHcCC--CCCCcEEEEEeChHHHHHHHHHHhCCCcccEEEEc
Q 002209 714 AILGGPTTPIIGEGDEE-ANDRFVEQLVACAEAAVEEVVRRGV--AHPSKIAVGGHSYGAFMTANLLAHAPHLFCCGIAR 790 (953)
Q Consensus 714 ~V~~~~~~~~~G~G~~~-~~~~~~~~~~~D~~~~~~~l~~~~~--~d~~~i~l~G~S~GG~~a~~~a~~~p~~~~a~v~~ 790 (953)
+|+.++..+........ ....+.....++++ -++.++.. .|+++.+|+|+||||+.|++++.++|++|.+++++
T Consensus 243 ivV~id~~~~~~R~~el~~~~~f~~~l~~eLl---P~I~~~y~~~~d~~~~~IaG~S~GGl~AL~~al~~Pd~Fg~v~s~ 319 (411)
T PRK10439 243 VYLLIDAIDTTHRSQELPCNADFWLAVQQELL---PQVRAIAPFSDDADRTVVAGQSFGGLAALYAGLHWPERFGCVLSQ 319 (411)
T ss_pred EEEEECCCCcccccccCCchHHHHHHHHHHHH---HHHHHhCCCCCCccceEEEEEChHHHHHHHHHHhCcccccEEEEe
Confidence 55665553221111111 12233333344444 44444433 47789999999999999999999999999999999
Q ss_pred ccCCCCCCCCcCcccccchhhhhHHHHHhcCcccccCCCCCcEEEEEeCCCCCCCCchHHHHHHHHHHHhCCCcEEEEEe
Q 002209 791 SGAYNRTLTPFGFQNEDRTLWEATSTYVEMSPFMSANKLKKPILLVHGEEDNNSGTLTMQSDRFFNALKGHGALCRLVIL 870 (953)
Q Consensus 791 ~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~sp~~~~~~i~~P~Li~~G~~D~~v~~~~~~~~~~~~~l~~~g~~~~~~~~ 870 (953)
+|.+.+.... ....... .+.+... ....-...++|-+|..|..+ ...++++++.|+++|.++++.++
T Consensus 320 Sgs~ww~~~~---~~~~~~l---~~~l~~~----~~~~~~lr~~i~~G~~E~~~---~~~~~~l~~~L~~~G~~~~~~~~ 386 (411)
T PRK10439 320 SGSFWWPHRG---GQQEGVL---LEQLKAG----EVSARGLRIVLEAGRREPMI---MRANQALYAQLHPAGHSVFWRQV 386 (411)
T ss_pred ccceecCCcc---CCchhHH---HHHHHhc----ccCCCCceEEEeCCCCCchH---HHHHHHHHHHHHHCCCcEEEEEC
Confidence 9864321100 0000000 1111110 01112245888899998654 57789999999999999999999
Q ss_pred CCCCccC
Q 002209 871 PFESHGY 877 (953)
Q Consensus 871 ~~~~H~~ 877 (953)
+| ||.+
T Consensus 387 ~G-GHd~ 392 (411)
T PRK10439 387 DG-GHDA 392 (411)
T ss_pred CC-CcCH
Confidence 98 7976
No 109
>TIGR01738 bioH putative pimeloyl-BioC--CoA transferase BioH. This CoA-binding enzyme is required for the production of pimeloyl-coenzyme A, the substrate of the BioF protein early in the biosynthesis of biotin. Its exact function is unknown, but is proposed in ref 2. This enzyme belongs to the alpha/beta hydrolase fold family (pfam model pfam00561). Members of this family are restricted to the Proteobacteria.
Probab=99.38 E-value=7.8e-12 Score=131.12 Aligned_cols=166 Identities=12% Similarity=0.091 Sum_probs=103.6
Q ss_pred HcCcEEEEcCCCCCCCCCChhhhhhhHHHHHHHHHHHHHHHHHcCCCCCCcEEEEEeChHHHHHHHHHHhCCCcccEEEE
Q 002209 710 ARGFAILGGPTTPIIGEGDEEANDRFVEQLVACAEAAVEEVVRRGVAHPSKIAVGGHSYGAFMTANLLAHAPHLFCCGIA 789 (953)
Q Consensus 710 ~~G~~V~~~~~~~~~G~G~~~~~~~~~~~~~~D~~~~~~~l~~~~~~d~~~i~l~G~S~GG~~a~~~a~~~p~~~~a~v~ 789 (953)
..+|.|+++ +.+|+|.+..... .++.+.++.+.+.. .+++.++||||||.+++.++.++|++++++|+
T Consensus 28 ~~~~~vi~~---d~~G~G~s~~~~~------~~~~~~~~~~~~~~---~~~~~lvG~S~Gg~~a~~~a~~~p~~v~~~il 95 (245)
T TIGR01738 28 SAHFTLHLV---DLPGHGRSRGFGP------LSLADAAEAIAAQA---PDPAIWLGWSLGGLVALHIAATHPDRVRALVT 95 (245)
T ss_pred ccCeEEEEe---cCCcCccCCCCCC------cCHHHHHHHHHHhC---CCCeEEEEEcHHHHHHHHHHHHCHHhhheeeE
Confidence 467999994 5567777643221 12223333333331 25899999999999999999999999999998
Q ss_pred cccCCCCCCC-Cc--Ccc------------cccc-h--hh-------------------hh------------HHH---H
Q 002209 790 RSGAYNRTLT-PF--GFQ------------NEDR-T--LW-------------------EA------------TST---Y 817 (953)
Q Consensus 790 ~~~~~d~~~~-~~--~~~------------~~~~-~--~~-------------------~~------------~~~---~ 817 (953)
+++....... .+ ... .... . .+ .. ... +
T Consensus 96 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 175 (245)
T TIGR01738 96 VASSPCFSAREDWPEGIKPDVLTGFQQQLSDDYQRTIERFLALQTLGTPTARQDARALKQTLLARPTPNVQVLQAGLEIL 175 (245)
T ss_pred ecCCcccccCCcccccCCHHHHHHHHHHhhhhHHHHHHHHHHHHHhcCCccchHHHHHHHHhhccCCCCHHHHHHHHHHh
Confidence 7654321000 00 000 0000 0 00 00 000 0
Q ss_pred HhcCcccccCCCCCcEEEEEeCCCCCCCCchHHHHHHHHHHHhCCCcEEEEEeCCCCccCCCcccHHHHHHHHHHHH
Q 002209 818 VEMSPFMSANKLKKPILLVHGEEDNNSGTLTMQSDRFFNALKGHGALCRLVILPFESHGYAARESIMHVLWETDRWL 894 (953)
Q Consensus 818 ~~~sp~~~~~~i~~P~Li~~G~~D~~v~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~H~~~~~~~~~~~~~~i~~fl 894 (953)
...+....+.++++|+|+++|++|..+| ++..+.+.+.++ .+++++++++||... .++...+.+.+.+|+
T Consensus 176 ~~~~~~~~l~~i~~Pvlii~g~~D~~~~--~~~~~~~~~~~~----~~~~~~~~~~gH~~~-~e~p~~~~~~i~~fi 245 (245)
T TIGR01738 176 ATVDLRQPLQNISVPFLRLYGYLDGLVP--AKVVPYLDKLAP----HSELYIFAKAAHAPF-LSHAEAFCALLVAFK 245 (245)
T ss_pred hcccHHHHHhcCCCCEEEEeecCCcccC--HHHHHHHHHhCC----CCeEEEeCCCCCCcc-ccCHHHHHHHHHhhC
Confidence 0011122456789999999999999998 777777766554 358889999999864 466778888888774
No 110
>TIGR01250 pro_imino_pep_2 proline-specific peptidases, Bacillus coagulans-type subfamily. This model describes a subfamily of the alpha/beta fold family of hydrolases. Characterized members include prolinases (Pro-Xaa dipeptidase, EC 3.4.13.8), prolyl aminopeptidases (EC 3.4.11.5), and a leucyl aminopeptidase
Probab=99.37 E-value=1.2e-11 Score=133.45 Aligned_cols=195 Identities=18% Similarity=0.137 Sum_probs=114.5
Q ss_pred ccEEEEeCCCCCcCcCCCCcccCCCCCCCCccchHHHHHHHcCcEEEEcCCCCCCCCCChhhhh-----hhHHHHHHHHH
Q 002209 670 LPCLFWSYPGEFKSKDAAGQVRGSPNEFPRIGSTSVLLWLARGFAILGGPTTPIIGEGDEEAND-----RFVEQLVACAE 744 (953)
Q Consensus 670 ~P~vv~~hGg~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~G~~V~~~~~~~~~G~G~~~~~~-----~~~~~~~~D~~ 744 (953)
.|.||++||++..+. .+.......+.+.||.|+.+|. +|+|.+.... .......+|+.
T Consensus 25 ~~~vl~~hG~~g~~~--------------~~~~~~~~~l~~~g~~vi~~d~---~G~G~s~~~~~~~~~~~~~~~~~~~~ 87 (288)
T TIGR01250 25 KIKLLLLHGGPGMSH--------------EYLENLRELLKEEGREVIMYDQ---LGCGYSDQPDDSDELWTIDYFVDELE 87 (288)
T ss_pred CCeEEEEcCCCCccH--------------HHHHHHHHHHHhcCCEEEEEcC---CCCCCCCCCCcccccccHHHHHHHHH
Confidence 467888999642110 0111222233445999999555 5777664321 11334444444
Q ss_pred HHHHHHHHcCCCCCCcEEEEEeChHHHHHHHHHHhCCCcccEEEEcccCCCCCCC-----C--cCcccc-----------
Q 002209 745 AAVEEVVRRGVAHPSKIAVGGHSYGAFMTANLLAHAPHLFCCGIARSGAYNRTLT-----P--FGFQNE----------- 806 (953)
Q Consensus 745 ~~~~~l~~~~~~d~~~i~l~G~S~GG~~a~~~a~~~p~~~~a~v~~~~~~d~~~~-----~--~~~~~~----------- 806 (953)
+.++.+ +.+++.++||||||.+++.++..+|++++++|+.+++...... . ..+...
T Consensus 88 ~~~~~~------~~~~~~liG~S~Gg~ia~~~a~~~p~~v~~lvl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 161 (288)
T TIGR01250 88 EVREKL------GLDKFYLLGHSWGGMLAQEYALKYGQHLKGLIISSMLDSAPEYVKELNRLRKELPPEVRAAIKRCEAS 161 (288)
T ss_pred HHHHHc------CCCcEEEEEeehHHHHHHHHHHhCccccceeeEecccccchHHHHHHHHHHhhcChhHHHHHHHHHhc
Confidence 433322 2357999999999999999999999999999988764321000 0 000000
Q ss_pred ---cch-------hhh-----------h-H---------HHHH---------------hcCcccccCCCCCcEEEEEeCC
Q 002209 807 ---DRT-------LWE-----------A-T---------STYV---------------EMSPFMSANKLKKPILLVHGEE 840 (953)
Q Consensus 807 ---~~~-------~~~-----------~-~---------~~~~---------------~~sp~~~~~~i~~P~Li~~G~~ 840 (953)
... .+. . . ..+. .......+.++++|+|+++|+.
T Consensus 162 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~i~~P~lii~G~~ 241 (288)
T TIGR01250 162 GDYDNPEYQEAVEVFYHHLLCRTRKWPEALKHLKSGMNTNVYNIMQGPNEFTITGNLKDWDITDKLSEIKVPTLLTVGEF 241 (288)
T ss_pred cCcchHHHHHHHHHHHHHhhcccccchHHHHHHhhccCHHHHhcccCCccccccccccccCHHHHhhccCCCEEEEecCC
Confidence 000 000 0 0 0000 0011123456889999999999
Q ss_pred CCCCCCchHHHHHHHHHHHhCCCcEEEEEeCCCCccCCCcccHHHHHHHHHHHHH
Q 002209 841 DNNSGTLTMQSDRFFNALKGHGALCRLVILPFESHGYAARESIMHVLWETDRWLQ 895 (953)
Q Consensus 841 D~~v~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~H~~~~~~~~~~~~~~i~~fl~ 895 (953)
|. ++ +..+..+.+.+.. .++++++++||... .+....+.+.+.+||+
T Consensus 242 D~-~~--~~~~~~~~~~~~~----~~~~~~~~~gH~~~-~e~p~~~~~~i~~fl~ 288 (288)
T TIGR01250 242 DT-MT--PEAAREMQELIAG----SRLVVFPDGSHMTM-IEDPEVYFKLLSDFIR 288 (288)
T ss_pred Cc-cC--HHHHHHHHHhccC----CeEEEeCCCCCCcc-cCCHHHHHHHHHHHhC
Confidence 97 45 6666666655532 47889999999875 4567788888888863
No 111
>TIGR03695 menH_SHCHC 2-succinyl-6-hydroxy-2,4-cyclohexadiene-1-carboxylate synthase. This protein catalyzes the formation of SHCHC, or (1 R,6 R)-2-succinyl-6-hydroxy-2,4-cyclohexadiene-1-carboxylate, by elmination of pyruvate from 2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexene-1-carboxylate (SEPHCHC). Note that SHCHC synthase activity previously was attributed to MenD, which in fact is SEPHCHC synthase.
Probab=99.37 E-value=1e-11 Score=130.62 Aligned_cols=195 Identities=16% Similarity=0.094 Sum_probs=112.9
Q ss_pred cEEEEeCCCCCcCcCCCCcccCCCCCCCCccchHHHHHHHcCcEEEEcCCCCCCCCCChhhhhhhHHHHHHHHHHH-HHH
Q 002209 671 PCLFWSYPGEFKSKDAAGQVRGSPNEFPRIGSTSVLLWLARGFAILGGPTTPIIGEGDEEANDRFVEQLVACAEAA-VEE 749 (953)
Q Consensus 671 P~vv~~hGg~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~G~~V~~~~~~~~~G~G~~~~~~~~~~~~~~D~~~~-~~~ 749 (953)
|+||++||..... ..| ......|+ +||.|+.+ +..|+|.+..........+.+.... +..
T Consensus 2 ~~vv~~hG~~~~~-----------~~~----~~~~~~L~-~~~~v~~~---d~~g~G~s~~~~~~~~~~~~~~~~~~~~~ 62 (251)
T TIGR03695 2 PVLVFLHGFLGSG-----------ADW----QALIELLG-PHFRCLAI---DLPGHGSSQSPDEIERYDFEEAAQDILAT 62 (251)
T ss_pred CEEEEEcCCCCch-----------hhH----HHHHHHhc-ccCeEEEE---cCCCCCCCCCCCccChhhHHHHHHHHHHH
Confidence 6799999953110 111 12334455 89999994 4467777644322112222333332 333
Q ss_pred HHHcCCCCCCcEEEEEeChHHHHHHHHHHhCCCcccEEEEcccCCCCCCCC-----cC----------------------
Q 002209 750 VVRRGVAHPSKIAVGGHSYGAFMTANLLAHAPHLFCCGIARSGAYNRTLTP-----FG---------------------- 802 (953)
Q Consensus 750 l~~~~~~d~~~i~l~G~S~GG~~a~~~a~~~p~~~~a~v~~~~~~d~~~~~-----~~---------------------- 802 (953)
+.+. .+.+++.++|||+||.+++.++.++|+.+++++++++........ ..
T Consensus 63 ~~~~--~~~~~~~l~G~S~Gg~ia~~~a~~~~~~v~~lil~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 140 (251)
T TIGR03695 63 LLDQ--LGIEPFFLVGYSMGGRIALYYALQYPERVQGLILESGSPGLATEEERAARRQNDEQLAQRFEQEGLEAFLDDWY 140 (251)
T ss_pred HHHH--cCCCeEEEEEeccHHHHHHHHHHhCchheeeeEEecCCCCcCchHhhhhhhhcchhhhhHHHhcCccHHHHHHh
Confidence 4333 235689999999999999999999999999999887653211000 00
Q ss_pred ----cccccchhhhh----------------HHHHH------hcCcccccCCCCCcEEEEEeCCCCCCCCchHHHHHHHH
Q 002209 803 ----FQNEDRTLWEA----------------TSTYV------EMSPFMSANKLKKPILLVHGEEDNNSGTLTMQSDRFFN 856 (953)
Q Consensus 803 ----~~~~~~~~~~~----------------~~~~~------~~sp~~~~~~i~~P~Li~~G~~D~~v~~~~~~~~~~~~ 856 (953)
+.......... ...+. ..+....+.++++|+|+++|++|..++ ....+
T Consensus 141 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~l~i~g~~D~~~~---~~~~~--- 214 (251)
T TIGR03695 141 QQPLFASQKNLPPEQRQALRAKRLANNPEGLAKMLRATGLGKQPSLWPKLQALTIPVLYLCGEKDEKFV---QIAKE--- 214 (251)
T ss_pred cCceeeecccCChHHhHHHHHhcccccchHHHHHHHHhhhhcccchHHHhhCCCCceEEEeeCcchHHH---HHHHH---
Confidence 00000000000 00000 011223356789999999999997642 33333
Q ss_pred HHHhCCCcEEEEEeCCCCccCCCcccHHHHHHHHHHHH
Q 002209 857 ALKGHGALCRLVILPFESHGYAARESIMHVLWETDRWL 894 (953)
Q Consensus 857 ~l~~~g~~~~~~~~~~~~H~~~~~~~~~~~~~~i~~fl 894 (953)
+......++++.+|++||... .++.+.+.+.+.+||
T Consensus 215 -~~~~~~~~~~~~~~~~gH~~~-~e~~~~~~~~i~~~l 250 (251)
T TIGR03695 215 -MQKLLPNLTLVIIANAGHNIH-LENPEAFAKILLAFL 250 (251)
T ss_pred -HHhcCCCCcEEEEcCCCCCcC-ccChHHHHHHHHHHh
Confidence 333334568889999999864 455677777788776
No 112
>PRK06489 hypothetical protein; Provisional
Probab=99.35 E-value=3e-11 Score=134.33 Aligned_cols=172 Identities=16% Similarity=0.217 Sum_probs=106.0
Q ss_pred HcCcEEEEcCCCCCCCCCChhhhhh---------hHHHHHHHHHHHHHHHHHcCCCCCCcEE-EEEeChHHHHHHHHHHh
Q 002209 710 ARGFAILGGPTTPIIGEGDEEANDR---------FVEQLVACAEAAVEEVVRRGVAHPSKIA-VGGHSYGAFMTANLLAH 779 (953)
Q Consensus 710 ~~G~~V~~~~~~~~~G~G~~~~~~~---------~~~~~~~D~~~~~~~l~~~~~~d~~~i~-l~G~S~GG~~a~~~a~~ 779 (953)
.++|.|+++ |.+|+|.+..... .....++|+.+ .+.+.- +-+++. |+||||||.+++.++.+
T Consensus 103 ~~~~~Via~---Dl~GhG~S~~p~~~~~~~~~~~~~~~~a~~~~~---~l~~~l--gi~~~~~lvG~SmGG~vAl~~A~~ 174 (360)
T PRK06489 103 ASKYFIILP---DGIGHGKSSKPSDGLRAAFPRYDYDDMVEAQYR---LVTEGL--GVKHLRLILGTSMGGMHAWMWGEK 174 (360)
T ss_pred ccCCEEEEe---CCCCCCCCCCCCcCCCCCCCcccHHHHHHHHHH---HHHHhc--CCCceeEEEEECHHHHHHHHHHHh
Confidence 578999994 5567787743321 12233333333 232321 224664 89999999999999999
Q ss_pred CCCcccEEEEcccCCCCC------C-----------CCc---Cccccc---c--------------------hhh-hh--
Q 002209 780 APHLFCCGIARSGAYNRT------L-----------TPF---GFQNED---R--------------------TLW-EA-- 813 (953)
Q Consensus 780 ~p~~~~a~v~~~~~~d~~------~-----------~~~---~~~~~~---~--------------------~~~-~~-- 813 (953)
+|++++++|++++..... . ..+ .+.... . ... ..
T Consensus 175 ~P~~V~~LVLi~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 254 (360)
T PRK06489 175 YPDFMDALMPMASQPTEMSGRNWMWRRMLIESIRNDPAWNNGNYTTQPPSLKRANPMFAIATSGGTLAYQAQAPTRAAAD 254 (360)
T ss_pred CchhhheeeeeccCcccccHHHHHHHHHHHHHHHhCCCCCCCCCCCCHHHHHHHHHHHHHHHhCCHHHHHHhcCChHHHH
Confidence 999999999887532100 0 000 000000 0 000 00
Q ss_pred --------------HHHHH-------hcCcccccCCCCCcEEEEEeCCCCCCCCchHHH--HHHHHHHHhCCCcEEEEEe
Q 002209 814 --------------TSTYV-------EMSPFMSANKLKKPILLVHGEEDNNSGTLTMQS--DRFFNALKGHGALCRLVIL 870 (953)
Q Consensus 814 --------------~~~~~-------~~sp~~~~~~i~~P~Li~~G~~D~~v~~~~~~~--~~~~~~l~~~g~~~~~~~~ 870 (953)
...+. ..+....+.+|++|+|+++|++|..+| ++.+ +++.+.+.. .+++++
T Consensus 255 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~L~~I~~PvLvI~G~~D~~~p--~~~~~~~~la~~ip~----a~l~~i 328 (360)
T PRK06489 255 KLVDERLAAPVTADANDFLYQWDSSRDYNPSPDLEKIKAPVLAINSADDERNP--PETGVMEAALKRVKH----GRLVLI 328 (360)
T ss_pred HHHHHHHHhhhhcCHHHHHHHHHHhhccChHHHHHhCCCCEEEEecCCCcccC--hhhHHHHHHHHhCcC----CeEEEE
Confidence 00010 111223456789999999999999988 7765 566555543 489999
Q ss_pred CCC----CccCCCcccHHHHHHHHHHHHHHh
Q 002209 871 PFE----SHGYAARESIMHVLWETDRWLQKY 897 (953)
Q Consensus 871 ~~~----~H~~~~~~~~~~~~~~i~~fl~~~ 897 (953)
|++ ||... +..+.+.+.+.+||++.
T Consensus 329 ~~a~~~~GH~~~--e~P~~~~~~i~~FL~~~ 357 (360)
T PRK06489 329 PASPETRGHGTT--GSAKFWKAYLAEFLAQV 357 (360)
T ss_pred CCCCCCCCcccc--cCHHHHHHHHHHHHHhc
Confidence 996 99873 57888889999999865
No 113
>PF08840 BAAT_C: BAAT / Acyl-CoA thioester hydrolase C terminal; InterPro: IPR014940 Acyl-CoA thioesterases are a group of enzymes that catalyse the hydrolysis of acyl-CoAs to the free fatty acid and coenzyme A (CoASH), providing the potential to regulate intracellular levels of acyl-CoAs, free fatty acids and CoASH. Bile acid-CoA:amino acid N-acetyltransferase (BAAT) is involved in bile acid metabolism and may also act as an acyl-CoA thioesterase that regulates intracellular levels of free fatty acids []. This entry represents a catalytic domain is found at the C terminus of acyl-CoA thioester hydrolases and bile acid-CoA:amino acid N-acetyltransferases. ; PDB: 3K2I_B 3HLK_B.
Probab=99.35 E-value=9.9e-12 Score=125.78 Aligned_cols=156 Identities=21% Similarity=0.160 Sum_probs=93.3
Q ss_pred HHHHHHHHHHHHcCCCCCCcEEEEEeChHHHHHHHHHHhCCCcccEEEEcccCCCCCCC---------CcCccccc----
Q 002209 741 ACAEAAVEEVVRRGVAHPSKIAVGGHSYGAFMTANLLAHAPHLFCCGIARSGAYNRTLT---------PFGFQNED---- 807 (953)
Q Consensus 741 ~D~~~~~~~l~~~~~~d~~~i~l~G~S~GG~~a~~~a~~~p~~~~a~v~~~~~~d~~~~---------~~~~~~~~---- 807 (953)
+-+..|++||.+++.+++++|+|+|.|.||.+|+.+++.+| .++|+|+++|..-.... ++.+....
T Consensus 4 Eyfe~Ai~~L~~~p~v~~~~Igi~G~SkGaelALllAs~~~-~i~avVa~~ps~~~~~~~~~~~~~~~~lp~~~~~~~~~ 82 (213)
T PF08840_consen 4 EYFEEAIDWLKSHPEVDPDKIGIIGISKGAELALLLASRFP-QISAVVAISPSSVVFQGIGFYRDSSKPLPYLPFDISKF 82 (213)
T ss_dssp HHHHHHHHHHHCSTTB--SSEEEEEETHHHHHHHHHHHHSS-SEEEEEEES--SB--SSEEEETTE--EE----B-GGG-
T ss_pred HHHHHHHHHHHhCCCCCCCCEEEEEECHHHHHHHHHHhcCC-CccEEEEeCCceeEecchhcccCCCccCCcCCcChhhc
Confidence 34578999999999999999999999999999999999997 79999999874211000 00000000
Q ss_pred -----chh--hhhHHHH-H--hcCcccccCCCCCcEEEEEeCCCCCCCCchHH-HHHHHHHHHhCCCc--EEEEEeCCCC
Q 002209 808 -----RTL--WEATSTY-V--EMSPFMSANKLKKPILLVHGEEDNNSGTLTMQ-SDRFFNALKGHGAL--CRLVILPFES 874 (953)
Q Consensus 808 -----~~~--~~~~~~~-~--~~sp~~~~~~i~~P~Li~~G~~D~~v~~~~~~-~~~~~~~l~~~g~~--~~~~~~~~~~ 874 (953)
... +...... . .....-.+.++++|+|+++|++|...| ... +..+.+.|++.+.+ ++++.||++|
T Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~~~a~IpvE~i~~piLli~g~dD~~Wp--S~~~a~~i~~rL~~~~~~~~~~~l~Y~~aG 160 (213)
T PF08840_consen 83 SWNEPGLLRSRYAFELADDKAVEEARIPVEKIKGPILLISGEDDQIWP--SSEMAEQIEERLKAAGFPHNVEHLSYPGAG 160 (213)
T ss_dssp EE-TTS-EE-TT-B--TTTGGGCCCB--GGG--SEEEEEEETT-SSS---HHHHHHHHHHHHHCTT-----EEEEETTB-
T ss_pred eecCCcceehhhhhhcccccccccccccHHHcCCCEEEEEeCCCCccc--hHHHHHHHHHHHHHhCCCCcceEEEcCCCC
Confidence 000 0000000 0 001112356789999999999999987 555 45777888888765 8889999999
Q ss_pred ccCCCcc---------------------------cHHHHHHHHHHHHHHhcc
Q 002209 875 HGYAARE---------------------------SIMHVLWETDRWLQKYCV 899 (953)
Q Consensus 875 H~~~~~~---------------------------~~~~~~~~i~~fl~~~l~ 899 (953)
|.+.... ..++.++.+++||+++|+
T Consensus 161 H~i~~Py~P~~~~~~~~~~~~~~~~GG~~~~~a~A~~dsW~~~l~Fl~~~L~ 212 (213)
T PF08840_consen 161 HLIEPPYFPHCRASYHKFIGTPLAWGGEPEAHAKAQEDSWKKILEFLRKHLG 212 (213)
T ss_dssp S---STT-----EEEETTTTEEEE--B-HHHHHHHHHHHHHHHHHHHHHH--
T ss_pred ceecCCCCCCcccccccccCCcccCCCChHHHHHHHHHHHHHHHHHHHHHhC
Confidence 9764110 235677889999999985
No 114
>PRK14875 acetoin dehydrogenase E2 subunit dihydrolipoyllysine-residue acetyltransferase; Provisional
Probab=99.34 E-value=2.5e-11 Score=136.35 Aligned_cols=169 Identities=18% Similarity=0.169 Sum_probs=102.9
Q ss_pred HHcCcEEEEcCCCCCCCCCChhh--hhhhHHHHHHHHHHHHHHHHHcCCCCCCcEEEEEeChHHHHHHHHHHhCCCcccE
Q 002209 709 LARGFAILGGPTTPIIGEGDEEA--NDRFVEQLVACAEAAVEEVVRRGVAHPSKIAVGGHSYGAFMTANLLAHAPHLFCC 786 (953)
Q Consensus 709 a~~G~~V~~~~~~~~~G~G~~~~--~~~~~~~~~~D~~~~~~~l~~~~~~d~~~i~l~G~S~GG~~a~~~a~~~p~~~~a 786 (953)
+.++|.|+. ++..|+|.+.. ..........++...+ +. ++.+++.++|||+||.+++.++..+|+++++
T Consensus 154 l~~~~~v~~---~d~~g~G~s~~~~~~~~~~~~~~~~~~~~----~~--~~~~~~~lvG~S~Gg~~a~~~a~~~~~~v~~ 224 (371)
T PRK14875 154 LAAGRPVIA---LDLPGHGASSKAVGAGSLDELAAAVLAFL----DA--LGIERAHLVGHSMGGAVALRLAARAPQRVAS 224 (371)
T ss_pred HhcCCEEEE---EcCCCCCCCCCCCCCCCHHHHHHHHHHHH----Hh--cCCccEEEEeechHHHHHHHHHHhCchheeE
Confidence 446699999 45567776632 1222334444443333 22 3456899999999999999999999989999
Q ss_pred EEEcccCCCCCCCCcCc----ccc-----------------c--c-hhhhh----------H---HHHHh---------c
Q 002209 787 GIARSGAYNRTLTPFGF----QNE-----------------D--R-TLWEA----------T---STYVE---------M 820 (953)
Q Consensus 787 ~v~~~~~~d~~~~~~~~----~~~-----------------~--~-~~~~~----------~---~~~~~---------~ 820 (953)
+|++++..........+ ... . . ..... . ..+.. .
T Consensus 225 lv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 304 (371)
T PRK14875 225 LTLIAPAGLGPEINGDYIDGFVAAESRRELKPVLELLFADPALVTRQMVEDLLKYKRLDGVDDALRALADALFAGGRQRV 304 (371)
T ss_pred EEEECcCCcCcccchhHHHHhhcccchhHHHHHHHHHhcChhhCCHHHHHHHHHHhccccHHHHHHHHHHHhccCcccch
Confidence 99988753211000000 000 0 0 00000 0 00000 1
Q ss_pred CcccccCCCCCcEEEEEeCCCCCCCCchHHHHHHHHHHHhCCCcEEEEEeCCCCccCCCcccHHHHHHHHHHHHHH
Q 002209 821 SPFMSANKLKKPILLVHGEEDNNSGTLTMQSDRFFNALKGHGALCRLVILPFESHGYAARESIMHVLWETDRWLQK 896 (953)
Q Consensus 821 sp~~~~~~i~~P~Li~~G~~D~~v~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~H~~~~~~~~~~~~~~i~~fl~~ 896 (953)
+....+.++++|+|++||++|..+| +.++..++ ..+++.+++++||... .++...+.+.+.+||.+
T Consensus 305 ~~~~~l~~i~~Pvlii~g~~D~~vp--~~~~~~l~-------~~~~~~~~~~~gH~~~-~e~p~~~~~~i~~fl~~ 370 (371)
T PRK14875 305 DLRDRLASLAIPVLVIWGEQDRIIP--AAHAQGLP-------DGVAVHVLPGAGHMPQ-MEAAADVNRLLAEFLGK 370 (371)
T ss_pred hHHHHHhcCCCCEEEEEECCCCccC--HHHHhhcc-------CCCeEEEeCCCCCChh-hhCHHHHHHHHHHHhcc
Confidence 1112456789999999999999998 77665442 2368889999999764 45666777777777754
No 115
>PRK10349 carboxylesterase BioH; Provisional
Probab=99.33 E-value=2.7e-11 Score=128.33 Aligned_cols=167 Identities=12% Similarity=0.044 Sum_probs=102.9
Q ss_pred HcCcEEEEcCCCCCCCCCChhhhhhhHHHHHHHHHHHHHHHHHcCCCCCCcEEEEEeChHHHHHHHHHHhCCCcccEEEE
Q 002209 710 ARGFAILGGPTTPIIGEGDEEANDRFVEQLVACAEAAVEEVVRRGVAHPSKIAVGGHSYGAFMTANLLAHAPHLFCCGIA 789 (953)
Q Consensus 710 ~~G~~V~~~~~~~~~G~G~~~~~~~~~~~~~~D~~~~~~~l~~~~~~d~~~i~l~G~S~GG~~a~~~a~~~p~~~~a~v~ 789 (953)
+..|.|++ .|..|+|.+.....+ ..++ .++.+.+. ..+++.++||||||++++.++.++|++++.+|+
T Consensus 37 ~~~~~vi~---~Dl~G~G~S~~~~~~---~~~~---~~~~l~~~---~~~~~~lvGhS~Gg~ia~~~a~~~p~~v~~lil 104 (256)
T PRK10349 37 SSHFTLHL---VDLPGFGRSRGFGAL---SLAD---MAEAVLQQ---APDKAIWLGWSLGGLVASQIALTHPERVQALVT 104 (256)
T ss_pred hcCCEEEE---ecCCCCCCCCCCCCC---CHHH---HHHHHHhc---CCCCeEEEEECHHHHHHHHHHHhChHhhheEEE
Confidence 45699999 555678877433211 1122 22233332 236899999999999999999999999999998
Q ss_pred cccCCCCCCC---CcCc-----------ccccchh---h------------hhH----------------------HHHH
Q 002209 790 RSGAYNRTLT---PFGF-----------QNEDRTL---W------------EAT----------------------STYV 818 (953)
Q Consensus 790 ~~~~~d~~~~---~~~~-----------~~~~~~~---~------------~~~----------------------~~~~ 818 (953)
+++....... .... ....... + ... ..+.
T Consensus 105 i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 184 (256)
T PRK10349 105 VASSPCFSARDEWPGIKPDVLAGFQQQLSDDFQRTVERFLALQTMGTETARQDARALKKTVLALPMPEVDVLNGGLEILK 184 (256)
T ss_pred ecCccceecCCCCCcccHHHHHHHHHHHHhchHHHHHHHHHHHHccCchHHHHHHHHHHHhhccCCCcHHHHHHHHHHHH
Confidence 8653211000 0000 0000000 0 000 0001
Q ss_pred hcCcccccCCCCCcEEEEEeCCCCCCCCchHHHHHHHHHHHhCCCcEEEEEeCCCCccCCCcccHHHHHHHHHHHHH
Q 002209 819 EMSPFMSANKLKKPILLVHGEEDNNSGTLTMQSDRFFNALKGHGALCRLVILPFESHGYAARESIMHVLWETDRWLQ 895 (953)
Q Consensus 819 ~~sp~~~~~~i~~P~Li~~G~~D~~v~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~H~~~~~~~~~~~~~~i~~fl~ 895 (953)
..+....+.++++|+|+++|++|..+| .+.+..+.+.+.. .+++++|++||... .++.+.+.+.+.+|-+
T Consensus 185 ~~~~~~~l~~i~~P~lii~G~~D~~~~--~~~~~~~~~~i~~----~~~~~i~~~gH~~~-~e~p~~f~~~l~~~~~ 254 (256)
T PRK10349 185 TVDLRQPLQNVSMPFLRLYGYLDGLVP--RKVVPMLDKLWPH----SESYIFAKAAHAPF-ISHPAEFCHLLVALKQ 254 (256)
T ss_pred hCccHHHHhhcCCCeEEEecCCCccCC--HHHHHHHHHhCCC----CeEEEeCCCCCCcc-ccCHHHHHHHHHHHhc
Confidence 112223456789999999999999988 7666655555433 48999999999864 5677788888777743
No 116
>PRK03204 haloalkane dehalogenase; Provisional
Probab=99.33 E-value=1.1e-10 Score=125.45 Aligned_cols=196 Identities=13% Similarity=0.085 Sum_probs=113.4
Q ss_pred ccEEEEeCCCCCcCcCCCCcccCCCCCCCCccchHHHHHHHcCcEEEEcCCCCCCCCCChhhhhhhHHHHHHHHHHHHHH
Q 002209 670 LPCLFWSYPGEFKSKDAAGQVRGSPNEFPRIGSTSVLLWLARGFAILGGPTTPIIGEGDEEANDRFVEQLVACAEAAVEE 749 (953)
Q Consensus 670 ~P~vv~~hGg~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~G~~V~~~~~~~~~G~G~~~~~~~~~~~~~~D~~~~~~~ 749 (953)
.|.||++||.+.. ...+........++|.|+++ |..|+|.+..+... .....+..+.+..
T Consensus 34 ~~~iv~lHG~~~~----------------~~~~~~~~~~l~~~~~vi~~---D~~G~G~S~~~~~~-~~~~~~~~~~~~~ 93 (286)
T PRK03204 34 GPPILLCHGNPTW----------------SFLYRDIIVALRDRFRCVAP---DYLGFGLSERPSGF-GYQIDEHARVIGE 93 (286)
T ss_pred CCEEEEECCCCcc----------------HHHHHHHHHHHhCCcEEEEE---CCCCCCCCCCCCcc-ccCHHHHHHHHHH
Confidence 3679999995311 01112222334567999994 55677776543221 1223444444444
Q ss_pred HHHcCCCCCCcEEEEEeChHHHHHHHHHHhCCCcccEEEEcccCCCCC-CC----------CcC----cc------c---
Q 002209 750 VVRRGVAHPSKIAVGGHSYGAFMTANLLAHAPHLFCCGIARSGAYNRT-LT----------PFG----FQ------N--- 805 (953)
Q Consensus 750 l~~~~~~d~~~i~l~G~S~GG~~a~~~a~~~p~~~~a~v~~~~~~d~~-~~----------~~~----~~------~--- 805 (953)
+.+.. +.+++.++||||||.+++.++..+|++++++|+.++..-.. .. ... +. .
T Consensus 94 ~~~~~--~~~~~~lvG~S~Gg~va~~~a~~~p~~v~~lvl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 171 (286)
T PRK03204 94 FVDHL--GLDRYLSMGQDWGGPISMAVAVERADRVRGVVLGNTWFWPADTLAMKAFSRVMSSPPVQYAILRRNFFVERLI 171 (286)
T ss_pred HHHHh--CCCCEEEEEECccHHHHHHHHHhChhheeEEEEECccccCCCchhHHHHHHHhccccchhhhhhhhHHHHHhc
Confidence 44432 34689999999999999999999999999999876542100 00 000 00 0
Q ss_pred --cc-chhh-hhHHHHH-----------------hc---Cc-ccc----cCC--CCCcEEEEEeCCCCCCCCchHH-HHH
Q 002209 806 --ED-RTLW-EATSTYV-----------------EM---SP-FMS----ANK--LKKPILLVHGEEDNNSGTLTMQ-SDR 853 (953)
Q Consensus 806 --~~-~~~~-~~~~~~~-----------------~~---sp-~~~----~~~--i~~P~Li~~G~~D~~v~~~~~~-~~~ 853 (953)
.. ...- +....+. .. .+ +.. +.+ +++|+|+++|++|..++ +.. .+.
T Consensus 172 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~PtliI~G~~D~~~~--~~~~~~~ 249 (286)
T PRK03204 172 PAGTEHRPSSAVMAHYRAVQPNAAARRGVAEMPKQILAARPLLARLAREVPATLGTKPTLLVWGMKDVAFR--PKTILPR 249 (286)
T ss_pred cccccCCCCHHHHHHhcCCCCCHHHHHHHHHHHHhcchhhHHHHHhhhhhhhhcCCCCeEEEecCCCcccC--cHHHHHH
Confidence 00 0000 0000000 00 00 000 011 27999999999999875 544 455
Q ss_pred HHHHHHhCCCcEEEEEeCCCCccCCCcccHHHHHHHHHHHH
Q 002209 854 FFNALKGHGALCRLVILPFESHGYAARESIMHVLWETDRWL 894 (953)
Q Consensus 854 ~~~~l~~~g~~~~~~~~~~~~H~~~~~~~~~~~~~~i~~fl 894 (953)
+.+.+.. .++++++++||... .+..+.+.+.+.+||
T Consensus 250 ~~~~ip~----~~~~~i~~aGH~~~-~e~Pe~~~~~i~~~~ 285 (286)
T PRK03204 250 LRATFPD----HVLVELPNAKHFIQ-EDAPDRIAAAIIERF 285 (286)
T ss_pred HHHhcCC----CeEEEcCCCccccc-ccCHHHHHHHHHHhc
Confidence 5555543 48889999999874 677888888888886
No 117
>TIGR03101 hydr2_PEP hydrolase, ortholog 2, exosortase system type 1 associated. This group of proteins are members of the alpha/beta hydrolase superfamily. These proteins are generally found in genomes containing the exosortase/PEP-CTERM protein expoert system, specifically the type 1 variant of this system described by the Genome Property GenProp0652. When found in this context they are invariably present in the vicinity of a second, relatively unrelated enzyme (ortholog 1, TIGR03100) of the same superfamily.
Probab=99.33 E-value=2.7e-10 Score=118.36 Aligned_cols=207 Identities=14% Similarity=0.095 Sum_probs=129.4
Q ss_pred EEEEcCCCcEEEEEEEcCCCCCCCCCCCccEEEEeCCCCCcCcCCCCcccCCCCCCCCccchHHHHHHHcCcEEEEcCCC
Q 002209 642 IKYQRKDGVQLSATLYLPPGYDPSKDGPLPCLFWSYPGEFKSKDAAGQVRGSPNEFPRIGSTSVLLWLARGFAILGGPTT 721 (953)
Q Consensus 642 ~~~~~~dg~~~~~~l~~P~~~~~~~~~~~P~vv~~hGg~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~G~~V~~~~~~ 721 (953)
+.+++..| .+.++++.|.+ ..+.|+||++||... ..+.+.......+..|+++||.|+.+
T Consensus 3 ~~l~~~~g-~~~~~~~~p~~-----~~~~~~VlllHG~g~-----------~~~~~~~~~~~la~~La~~Gy~Vl~~--- 62 (266)
T TIGR03101 3 FFLDAPHG-FRFCLYHPPVA-----VGPRGVVIYLPPFAE-----------EMNKSRRMVALQARAFAAGGFGVLQI--- 62 (266)
T ss_pred EEecCCCC-cEEEEEecCCC-----CCCceEEEEECCCcc-----------cccchhHHHHHHHHHHHHCCCEEEEE---
Confidence 45666555 46788887764 234789999999421 00111111112356788899999995
Q ss_pred CCCCCCChhhh--hhhHHHHHHHHHHHHHHHHHcCCCCCCcEEEEEeChHHHHHHHHHHhCCCcccEEEEcccCCCCCCC
Q 002209 722 PIIGEGDEEAN--DRFVEQLVACAEAAVEEVVRRGVAHPSKIAVGGHSYGAFMTANLLAHAPHLFCCGIARSGAYNRTLT 799 (953)
Q Consensus 722 ~~~G~G~~~~~--~~~~~~~~~D~~~~~~~l~~~~~~d~~~i~l~G~S~GG~~a~~~a~~~p~~~~a~v~~~~~~d~~~~ 799 (953)
|..|+|.+... .......++|+.++++++.+++ ..+++|+||||||.+++.++.++|+.++++|+.+|+.+....
T Consensus 63 Dl~G~G~S~g~~~~~~~~~~~~Dv~~ai~~L~~~~---~~~v~LvG~SmGG~vAl~~A~~~p~~v~~lVL~~P~~~g~~~ 139 (266)
T TIGR03101 63 DLYGCGDSAGDFAAARWDVWKEDVAAAYRWLIEQG---HPPVTLWGLRLGALLALDAANPLAAKCNRLVLWQPVVSGKQQ 139 (266)
T ss_pred CCCCCCCCCCccccCCHHHHHHHHHHHHHHHHhcC---CCCEEEEEECHHHHHHHHHHHhCccccceEEEeccccchHHH
Confidence 44677776432 2234567899999999998764 368999999999999999999999999999999987652110
Q ss_pred C-----cC-----cccccc----hhh------------------hhHHHHHhcCcccccCCCCCcEEEEEeCCCCCCCCc
Q 002209 800 P-----FG-----FQNEDR----TLW------------------EATSTYVEMSPFMSANKLKKPILLVHGEEDNNSGTL 847 (953)
Q Consensus 800 ~-----~~-----~~~~~~----~~~------------------~~~~~~~~~sp~~~~~~i~~P~Li~~G~~D~~v~~~ 847 (953)
- .. ...... ..- +....+...+....+. ...++|++.-..+.--+ .
T Consensus 140 l~~~lrl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~~l~~~~~-~~~~~~~~~~~~~~~~~-~ 217 (266)
T TIGR03101 140 LQQFLRLRLVARRLGGESAEASNSLRERLLAGEDVEIAGYELAPALASDLDQRQLAPAVP-KNCPVHWFEVRPEEGAT-L 217 (266)
T ss_pred HHHHHHHHHHHHhccccccccchhHHhhccCCCeEEEeceecCHHHHHHHHhcccCCCCC-CCCceEEEEeccccCCC-C
Confidence 0 00 000000 000 0011222222211111 14567887664332211 1
Q ss_pred hHHHHHHHHHHHhCCCcEEEEEeCCC
Q 002209 848 TMQSDRFFNALKGHGALCRLVILPFE 873 (953)
Q Consensus 848 ~~~~~~~~~~l~~~g~~~~~~~~~~~ 873 (953)
.....++.+.++..|+.++...|+|.
T Consensus 218 ~~~~~~l~~~~~~~g~~v~~~~~~~~ 243 (266)
T TIGR03101 218 SPVFSRLGEQWVQSGVEVTVDLVPGP 243 (266)
T ss_pred CHHHHHHHHHHHHcCCeEeeeecCCc
Confidence 45678899999999999999999986
No 118
>COG2706 3-carboxymuconate cyclase [Carbohydrate transport and metabolism]
Probab=99.32 E-value=1.4e-09 Score=111.12 Aligned_cols=292 Identities=15% Similarity=0.153 Sum_probs=166.8
Q ss_pred eceEEEEccCCCCCCceeeeecCCCCCcccceEeccCCCeEEEEEeeccccCCCCcceEEEEECCCCceeecccCCCccc
Q 002209 163 TGIGIHQLFPDGKLGQEIEIQGFPDGAKLNFVTWSQDGKHLAFSIRIDAEDSSSSKLRVWVADVDTGKARPLFQSPDIYL 242 (953)
Q Consensus 163 ~~i~i~~~~~~g~~~~~~~l~~~~~~~~~~~~~wSPDG~~laf~~~~~~~~~~~~~~~l~~~d~~~g~~~~lt~~~~~~~ 242 (953)
..|++|++.+ ..++...+.....-.......|+|++++|+..... ++.+...-|.+|.+.|+...+-.......
T Consensus 16 ~gI~v~~ld~--~~g~l~~~~~v~~~~nptyl~~~~~~~~LY~v~~~----~~~ggvaay~iD~~~G~Lt~ln~~~~~g~ 89 (346)
T COG2706 16 QGIYVFNLDT--KTGELSLLQLVAELGNPTYLAVNPDQRHLYVVNEP----GEEGGVAAYRIDPDDGRLTFLNRQTLPGS 89 (346)
T ss_pred CceEEEEEeC--cccccchhhhccccCCCceEEECCCCCEEEEEEec----CCcCcEEEEEEcCCCCeEEEeeccccCCC
Confidence 3789999852 11222111112222367889999999988776642 24566777888887787665533222110
Q ss_pred cccccceEEecCCeEEEEEecCCCCCCCCCCCCCCCCceeecCCCccccchhhhhhcCCcchhhhhhhhccceEEEEEc-
Q 002209 243 NAIFDNFVWVNNSTLLVCTIPLLRGDPPKKPLVPLGPKMQSNEKRDIIQVRTFQDLLKDEYDEDLFDYYATTQLVLVSL- 321 (953)
Q Consensus 243 ~~~~~~~~wspDg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~l~~~~~- 321 (953)
....++.++||+.++.+. |..+.+-++.+
T Consensus 90 --~p~yvsvd~~g~~vf~An------------------------------------------------Y~~g~v~v~p~~ 119 (346)
T COG2706 90 --PPCYVSVDEDGRFVFVAN------------------------------------------------YHSGSVSVYPLQ 119 (346)
T ss_pred --CCeEEEECCCCCEEEEEE------------------------------------------------ccCceEEEEEcc
Confidence 013567889999888761 12233444444
Q ss_pred -CCceeEeCC---C-----------CcccccccCCCCcEEEEEEecCCccccccCCCCCcceEEEeccCceEEEeccCCC
Q 002209 322 -DGTVKEIGP---P-----------AVYTSLDPSPDEKYILISSIHRPYSFIVPCGRFPRQVGVWTTDGIFVRELCDLPL 386 (953)
Q Consensus 322 -~g~~~~l~~---~-----------~~~~~~~~SpDG~~l~~~~~~~~~~~~~~~~~~~~~i~~~d~~g~~~~~l~~~~~ 386 (953)
+|.+..+.. . ...-...+.|||++|+..... ...|++++++.+..........
T Consensus 120 ~dG~l~~~v~~~~h~g~~p~~rQ~~~h~H~a~~tP~~~~l~v~DLG------------~Dri~~y~~~dg~L~~~~~~~v 187 (346)
T COG2706 120 ADGSLQPVVQVVKHTGSGPHERQESPHVHSANFTPDGRYLVVPDLG------------TDRIFLYDLDDGKLTPADPAEV 187 (346)
T ss_pred cCCccccceeeeecCCCCCCccccCCccceeeeCCCCCEEEEeecC------------CceEEEEEcccCcccccccccc
Confidence 343322211 0 113456799999999877632 2378999998544333222211
Q ss_pred cccCCccccccccCccceeeccCCCCceEEEEeccCCCcccccccCCeEEEEecCCCCCCCceEEe---eccc------c
Q 002209 387 AEDIPIAFNSVRKGMRSINWRSDKPSTLYWAETQDGGDAKVEVTPRDIIYTQQAEPVQGEGPEILH---KLDL------R 457 (953)
Q Consensus 387 ~~~~p~~~~~~~~~~~~~~wspDg~~i~~~~~~~~~~~~~~~~~~~~~l~~~d~~~~~g~~~~~l~---~~~~------~ 457 (953)
.| ..|+|.+.|+|+|+ ++|.+.+.+ +.|.++..++. .++.+.+. ..+. .
T Consensus 188 ---~~------G~GPRHi~FHpn~k-~aY~v~EL~-----------stV~v~~y~~~-~g~~~~lQ~i~tlP~dF~g~~~ 245 (346)
T COG2706 188 ---KP------GAGPRHIVFHPNGK-YAYLVNELN-----------STVDVLEYNPA-VGKFEELQTIDTLPEDFTGTNW 245 (346)
T ss_pred ---CC------CCCcceEEEcCCCc-EEEEEeccC-----------CEEEEEEEcCC-CceEEEeeeeccCccccCCCCc
Confidence 11 25789999999998 566644432 24444443122 34444432 1111 2
Q ss_pred cCCeeeccCCceEEEEEecccCceEEEEEcCCCCCCCcEEeecCCCccccCCCCCCCeEeccCCCEEEEEeeeccCCCcE
Q 002209 458 YGGISWCDDSLALVYESWYKTRRTRTWVISPGSKDVAPRILFDRSSEDVYSDPGSPMMRRTSTGTYVIAKIKKENDEGTY 537 (953)
Q Consensus 458 ~~~~~~SpDg~~l~~~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~SpDG~~l~~~~~~~~~~~~~ 537 (953)
...+..|+||+.|+.+ ++.-....++.++.+++ ....+...+.+... |.. +.++++|++|+....+.
T Consensus 246 ~aaIhis~dGrFLYas-NRg~dsI~~f~V~~~~g--~L~~~~~~~teg~~--PR~--F~i~~~g~~Liaa~q~s------ 312 (346)
T COG2706 246 AAAIHISPDGRFLYAS-NRGHDSIAVFSVDPDGG--KLELVGITPTEGQF--PRD--FNINPSGRFLIAANQKS------ 312 (346)
T ss_pred eeEEEECCCCCEEEEe-cCCCCeEEEEEEcCCCC--EEEEEEEeccCCcC--Ccc--ceeCCCCCEEEEEccCC------
Confidence 2347889999988765 44433346777787775 33333222222111 111 56899999998876432
Q ss_pred EEEecCCCCCCCCCCeEEEEECCCCceEEEec
Q 002209 538 ILLNGNGATPEGNIPFLDLFDINTGSKERIWE 569 (953)
Q Consensus 538 ~~~~~~~~~~~~~~~~L~~~d~~~~~~~~l~~ 569 (953)
+.-.+|..|-++|++..+..
T Consensus 313 ------------d~i~vf~~d~~TG~L~~~~~ 332 (346)
T COG2706 313 ------------DNITVFERDKETGRLTLLGR 332 (346)
T ss_pred ------------CcEEEEEEcCCCceEEeccc
Confidence 34568888888998876644
No 119
>COG3509 LpqC Poly(3-hydroxybutyrate) depolymerase [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=99.32 E-value=5.4e-11 Score=119.03 Aligned_cols=225 Identities=19% Similarity=0.157 Sum_probs=140.3
Q ss_pred CCcEEEEEEEcCCCCCCCCCCCccEEEEeCCCCCcCcCCCCcccCCCCCCCCccchHHHHHHHcCcEEEEcCCCCCCC--
Q 002209 648 DGVQLSATLYLPPGYDPSKDGPLPCLFWSYPGEFKSKDAAGQVRGSPNEFPRIGSTSVLLWLARGFAILGGPTTPIIG-- 725 (953)
Q Consensus 648 dg~~~~~~l~~P~~~~~~~~~~~P~vv~~hGg~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~G~~V~~~~~~~~~G-- 725 (953)
+|...++++|.|++... ..|+||++||+... ..++.+. + ++ -......||.|+.++..+..-
T Consensus 43 ~g~~r~y~l~vP~g~~~----~apLvv~LHG~~~s---gag~~~~-----s--g~--d~lAd~~gFlV~yPdg~~~~wn~ 106 (312)
T COG3509 43 NGLKRSYRLYVPPGLPS----GAPLVVVLHGSGGS---GAGQLHG-----T--GW--DALADREGFLVAYPDGYDRAWNA 106 (312)
T ss_pred CCCccceEEEcCCCCCC----CCCEEEEEecCCCC---hHHhhcc-----c--ch--hhhhcccCcEEECcCccccccCC
Confidence 67789999999998532 25999999996422 1122221 1 11 122245799999976654332
Q ss_pred --CCChhhhh--hhHHHHHHHHHHHHHHHHHcCCCCCCcEEEEEeChHHHHHHHHHHhCCCcccEEEEcccCC-CCCCCC
Q 002209 726 --EGDEEAND--RFVEQLVACAEAAVEEVVRRGVAHPSKIAVGGHSYGAFMTANLLAHAPHLFCCGIARSGAY-NRTLTP 800 (953)
Q Consensus 726 --~G~~~~~~--~~~~~~~~D~~~~~~~l~~~~~~d~~~i~l~G~S~GG~~a~~~a~~~p~~~~a~v~~~~~~-d~~~~~ 800 (953)
.+..+.+. .-.-.++..+.+.++.|..+..||+.||+|.|.|.||.|+.++++.+|++|.|+..+++.. +-..
T Consensus 107 ~~~~~~~~p~~~~~g~ddVgflr~lva~l~~~~gidp~RVyvtGlS~GG~Ma~~lac~~p~~faa~A~VAg~~~~~~a-- 184 (312)
T COG3509 107 NGCGNWFGPADRRRGVDDVGFLRALVAKLVNEYGIDPARVYVTGLSNGGRMANRLACEYPDIFAAIAPVAGLLALGVA-- 184 (312)
T ss_pred CcccccCCcccccCCccHHHHHHHHHHHHHHhcCcCcceEEEEeeCcHHHHHHHHHhcCcccccceeeeecccCCCcc--
Confidence 22221121 2244678888899999999999999999999999999999999999999999999998864 1100
Q ss_pred cCcccccchhhhhHHHHHhcCcccccCCCCCcEEEEEeCCCCCCCCchHHHHHHHHHHHh--------------------
Q 002209 801 FGFQNEDRTLWEATSTYVEMSPFMSANKLKKPILLVHGEEDNNSGTLTMQSDRFFNALKG-------------------- 860 (953)
Q Consensus 801 ~~~~~~~~~~~~~~~~~~~~sp~~~~~~i~~P~Li~~G~~D~~v~~~~~~~~~~~~~l~~-------------------- 860 (953)
.... .+..-...--..+|......=..| |-+|..|..|+ ..+..+.+.++..
T Consensus 185 --~~~~--rp~~~m~~~G~~Dp~~p~~gG~~~--~g~g~~~~~v~--~~~~~~~Waa~ng~~~~p~~~~~~~~~~~~~~~ 256 (312)
T COG3509 185 --CTPP--RPVSVMAFHGTADPLNPYHGGGVP--IGRGQRDGVVS--AADLAARWAAVNGCQAGPDTAELPDVGDGTDYD 256 (312)
T ss_pred --cCCC--CchhHHHhcCCCCCCCCCCCCCcc--ccccccccccc--HHHHHHHHHHhcCCCCCCcccccCCCcccceee
Confidence 0000 000000000011222111111223 77888888776 6666666666532
Q ss_pred ---CCCcEEEEEeCCCCccCCCccc-----------HHHHHHHHHHHHHHhc
Q 002209 861 ---HGALCRLVILPFESHGYAARES-----------IMHVLWETDRWLQKYC 898 (953)
Q Consensus 861 ---~g~~~~~~~~~~~~H~~~~~~~-----------~~~~~~~i~~fl~~~l 898 (953)
.+.++++..+.+.||.+..... .....++|.+||..+-
T Consensus 257 ~~~~~~~V~~y~i~g~GH~wp~~~~~~~~~~g~~t~~~dat~~iw~Ff~~~~ 308 (312)
T COG3509 257 TCDGNARVELYTIDGGGHTWPGGTQYGPAALGMSTRGFDATERIWRFFRQHR 308 (312)
T ss_pred ccCCCcceEEEEEeCCcccCcCCCCCCcccccccccCcchHHHHHHHHHhcc
Confidence 1246789999999999853111 1235678899988764
No 120
>cd00200 WD40 WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and botto
Probab=99.32 E-value=8.8e-10 Score=117.88 Aligned_cols=245 Identities=16% Similarity=0.144 Sum_probs=151.8
Q ss_pred CcccceEeccCCCeEEEEEeeccccCCCCcceEEEEECCCCceeecccCCCccccccccceEEecCCeEEEEEecCCCCC
Q 002209 189 AKLNFVTWSQDGKHLAFSIRIDAEDSSSSKLRVWVADVDTGKARPLFQSPDIYLNAIFDNFVWVNNSTLLVCTIPLLRGD 268 (953)
Q Consensus 189 ~~~~~~~wSPDG~~laf~~~~~~~~~~~~~~~l~~~d~~~g~~~~lt~~~~~~~~~~~~~~~wspDg~~l~~~~~~~~~~ 268 (953)
..+..+.|+|||+.|++... ...+++++.++++........... +..+.|+|+++.|++..
T Consensus 10 ~~i~~~~~~~~~~~l~~~~~---------~g~i~i~~~~~~~~~~~~~~~~~~----i~~~~~~~~~~~l~~~~------ 70 (289)
T cd00200 10 GGVTCVAFSPDGKLLATGSG---------DGTIKVWDLETGELLRTLKGHTGP----VRDVAASADGTYLASGS------ 70 (289)
T ss_pred CCEEEEEEcCCCCEEEEeec---------CcEEEEEEeeCCCcEEEEecCCcc----eeEEEECCCCCEEEEEc------
Confidence 46889999999999998542 557777787776543322222221 55889999998888661
Q ss_pred CCCCCCCCCCCceeecCCCccccchhhhhhcCCcchhhhhhhhccceEEEEEc-CC-ceeEeCCC-CcccccccCCCCcE
Q 002209 269 PPKKPLVPLGPKMQSNEKRDIIQVRTFQDLLKDEYDEDLFDYYATTQLVLVSL-DG-TVKEIGPP-AVYTSLDPSPDEKY 345 (953)
Q Consensus 269 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~l~~~~~-~g-~~~~l~~~-~~~~~~~~SpDG~~ 345 (953)
..+.|.++++ ++ ....+... ..+..+.|+|+++.
T Consensus 71 -------------------------------------------~~~~i~i~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~ 107 (289)
T cd00200 71 -------------------------------------------SDKTIRLWDLETGECVRTLTGHTSYVSSVAFSPDGRI 107 (289)
T ss_pred -------------------------------------------CCCeEEEEEcCcccceEEEeccCCcEEEEEEcCCCCE
Confidence 1246777787 54 34444444 57888999999876
Q ss_pred EEEEEecCCccccccCCCCCcceEEEeccCce-EEEeccCCCcccCCccccccccCccceeeccCCCCceEEEEeccCCC
Q 002209 346 ILISSIHRPYSFIVPCGRFPRQVGVWTTDGIF-VRELCDLPLAEDIPIAFNSVRKGMRSINWRSDKPSTLYWAETQDGGD 424 (953)
Q Consensus 346 l~~~~~~~~~~~~~~~~~~~~~i~~~d~~g~~-~~~l~~~~~~~~~p~~~~~~~~~~~~~~wspDg~~i~~~~~~~~~~~ 424 (953)
++....+ +.+.+|++..+. ...+..+. ..+..+.|+|+++.++..
T Consensus 108 ~~~~~~~-------------~~i~~~~~~~~~~~~~~~~~~-------------~~i~~~~~~~~~~~l~~~-------- 153 (289)
T cd00200 108 LSSSSRD-------------KTIKVWDVETGKCLTTLRGHT-------------DWVNSVAFSPDGTFVASS-------- 153 (289)
T ss_pred EEEecCC-------------CeEEEEECCCcEEEEEeccCC-------------CcEEEEEEcCcCCEEEEE--------
Confidence 6655422 389999998443 33333211 234678999997654443
Q ss_pred cccccccCCeEEEEecCCCCCCCceEEeecccccCCeeeccCCceEEEEEecccCceEEEEEcCCCCCCCcEEeecCCCc
Q 002209 425 AKVEVTPRDIIYTQQAEPVQGEGPEILHKLDLRYGGISWCDDSLALVYESWYKTRRTRTWVISPGSKDVAPRILFDRSSE 504 (953)
Q Consensus 425 ~~~~~~~~~~l~~~d~~~~~g~~~~~l~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~ 504 (953)
...+.+.++++ ..+.....+......+..+.|+|+++.|++....+ .+.+++...+ +..........
T Consensus 154 -----~~~~~i~i~d~--~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~----~i~i~d~~~~--~~~~~~~~~~~ 220 (289)
T cd00200 154 -----SQDGTIKLWDL--RTGKCVATLTGHTGEVNSVAFSPDGEKLLSSSSDG----TIKLWDLSTG--KCLGTLRGHEN 220 (289)
T ss_pred -----cCCCcEEEEEc--cccccceeEecCccccceEEECCCcCEEEEecCCC----cEEEEECCCC--ceecchhhcCC
Confidence 22457888886 22333344444555678899999999888876532 4666666553 22222211111
Q ss_pred cccCCCCCCCeEeccCCCEEEEEeeeccCCCcEEEEecCCCCCCCCCCeEEEEECCCCceEEEec
Q 002209 505 DVYSDPGSPMMRRTSTGTYVIAKIKKENDEGTYILLNGNGATPEGNIPFLDLFDINTGSKERIWE 569 (953)
Q Consensus 505 ~~~~~~~~p~~~~SpDG~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~d~~~~~~~~l~~ 569 (953)
.+.. +.|+|++.+++....+ ..|++||+.+++......
T Consensus 221 ~i~~------~~~~~~~~~~~~~~~~---------------------~~i~i~~~~~~~~~~~~~ 258 (289)
T cd00200 221 GVNS------VAFSPDGYLLASGSED---------------------GTIRVWDLRTGECVQTLS 258 (289)
T ss_pred ceEE------EEEcCCCcEEEEEcCC---------------------CcEEEEEcCCceeEEEcc
Confidence 2222 6789997766655411 248999998766554443
No 121
>KOG0291 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=99.32 E-value=1.1e-09 Score=120.45 Aligned_cols=229 Identities=17% Similarity=0.193 Sum_probs=149.6
Q ss_pred cccceEeccCCCeEEEEEeeccccCCCCcceEEEEECCCCceeecccCCCccccccccceEEecCCeEEEEEecCCCCCC
Q 002209 190 KLNFVTWSQDGKHLAFSIRIDAEDSSSSKLRVWVADVDTGKARPLFQSPDIYLNAIFDNFVWVNNSTLLVCTIPLLRGDP 269 (953)
Q Consensus 190 ~~~~~~wSPDG~~laf~~~~~~~~~~~~~~~l~~~d~~~g~~~~lt~~~~~~~~~~~~~~~wspDg~~l~~~~~~~~~~~ 269 (953)
.+...+|+--|+||||... +..+|-+|+-.+..-.---+.... .+..++.||||+.|+...
T Consensus 309 ~I~t~~~N~tGDWiA~g~~--------klgQLlVweWqsEsYVlKQQgH~~----~i~~l~YSpDgq~iaTG~------- 369 (893)
T KOG0291|consen 309 KILTVSFNSTGDWIAFGCS--------KLGQLLVWEWQSESYVLKQQGHSD----RITSLAYSPDGQLIATGA------- 369 (893)
T ss_pred eeeEEEecccCCEEEEcCC--------ccceEEEEEeeccceeeecccccc----ceeeEEECCCCcEEEecc-------
Confidence 6778899999999999542 345666666555322111111111 166899999999999651
Q ss_pred CCCCCCCCCCceeecCCCccccchhhhhhcCCcchhhhhhhhccceEEEEEc-CC-ceeEeCCC-CcccccccCCCCcEE
Q 002209 270 PKKPLVPLGPKMQSNEKRDIIQVRTFQDLLKDEYDEDLFDYYATTQLVLVSL-DG-TVKEIGPP-AVYTSLDPSPDEKYI 346 (953)
Q Consensus 270 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~l~~~~~-~g-~~~~l~~~-~~~~~~~~SpDG~~l 346 (953)
..+.+-++|. .| -...++++ ..++.+.|+.+|+.|
T Consensus 370 ------------------------------------------eDgKVKvWn~~SgfC~vTFteHts~Vt~v~f~~~g~~l 407 (893)
T KOG0291|consen 370 ------------------------------------------EDGKVKVWNTQSGFCFVTFTEHTSGVTAVQFTARGNVL 407 (893)
T ss_pred ------------------------------------------CCCcEEEEeccCceEEEEeccCCCceEEEEEEecCCEE
Confidence 1234556676 66 44556666 889999999999999
Q ss_pred EEEEecCCccccccCCCCCcceEEEeccC-ceEEEeccCCCcccCCccccccccCccceeeccCCCCceEEEEeccCCCc
Q 002209 347 LISSIHRPYSFIVPCGRFPRQVGVWTTDG-IFVRELCDLPLAEDIPIAFNSVRKGMRSINWRSDKPSTLYWAETQDGGDA 425 (953)
Q Consensus 347 ~~~~~~~~~~~~~~~~~~~~~i~~~d~~g-~~~~~l~~~~~~~~~p~~~~~~~~~~~~~~wspDg~~i~~~~~~~~~~~~ 425 (953)
+.++.++ .+..||+.. ...|..+... |+.+ ..++-.|.|. |++.- .
T Consensus 408 lssSLDG-------------tVRAwDlkRYrNfRTft~P~-----p~Qf-------scvavD~sGe-lV~AG-~------ 454 (893)
T KOG0291|consen 408 LSSSLDG-------------TVRAWDLKRYRNFRTFTSPE-----PIQF-------SCVAVDPSGE-LVCAG-A------ 454 (893)
T ss_pred EEeecCC-------------eEEeeeecccceeeeecCCC-----ceee-------eEEEEcCCCC-EEEee-c------
Confidence 8888554 899999973 4455554421 1111 2244445564 33330 0
Q ss_pred ccccccCCeEEEEecCCCCCCCceEEeecccccCCeeeccCCceEEEEEecccCceEEEEEcCCCCCCCcEEeecCCCcc
Q 002209 426 KVEVTPRDIIYTQQAEPVQGEGPEILHKLDLRYGGISWCDDSLALVYESWYKTRRTRTWVISPGSKDVAPRILFDRSSED 505 (953)
Q Consensus 426 ~~~~~~~~~l~~~d~~~~~g~~~~~l~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~ 505 (953)
...-.|++|++ .+|.....|.++++.+.+++|+|+|..|+..+|+++. ++|-+=...+..++..+.. +
T Consensus 455 ----~d~F~IfvWS~--qTGqllDiLsGHEgPVs~l~f~~~~~~LaS~SWDkTV--RiW~if~s~~~vEtl~i~s----d 522 (893)
T KOG0291|consen 455 ----QDSFEIFVWSV--QTGQLLDILSGHEGPVSGLSFSPDGSLLASGSWDKTV--RIWDIFSSSGTVETLEIRS----D 522 (893)
T ss_pred ----cceEEEEEEEe--ecCeeeehhcCCCCcceeeEEccccCeEEeccccceE--EEEEeeccCceeeeEeecc----c
Confidence 11226888886 4454455678899999999999999999999999876 8887765543233333322 2
Q ss_pred ccCCCCCCCeEeccCCCEEEEEeee
Q 002209 506 VYSDPGSPMMRRTSTGTYVIAKIKK 530 (953)
Q Consensus 506 ~~~~~~~p~~~~SpDG~~l~~~~~~ 530 (953)
+.. ++|+|||+.|+....+
T Consensus 523 vl~------vsfrPdG~elaVaTld 541 (893)
T KOG0291|consen 523 VLA------VSFRPDGKELAVATLD 541 (893)
T ss_pred eeE------EEEcCCCCeEEEEEec
Confidence 222 8899999999988754
No 122
>KOG3043 consensus Predicted hydrolase related to dienelactone hydrolase [General function prediction only]
Probab=99.31 E-value=1.2e-11 Score=118.21 Aligned_cols=164 Identities=19% Similarity=0.229 Sum_probs=123.0
Q ss_pred HHHHHHHcCcEEEEcCCCCCCCCCCh---hhhhhh-----HHHHHHHHHHHHHHHHHcCCCCCCcEEEEEeChHHHHHHH
Q 002209 704 SVLLWLARGFAILGGPTTPIIGEGDE---EANDRF-----VEQLVACAEAAVEEVVRRGVAHPSKIAVGGHSYGAFMTAN 775 (953)
Q Consensus 704 ~~~~la~~G~~V~~~~~~~~~G~G~~---~~~~~~-----~~~~~~D~~~~~~~l~~~~~~d~~~i~l~G~S~GG~~a~~ 775 (953)
.+..++..||.|+.||.+...-+.-+ .....| .+....|+.+.++||..++ +..+|+++|.+|||.++..
T Consensus 59 ~Adk~A~~Gy~v~vPD~~~Gdp~~~~~~~~~~~~w~~~~~~~~~~~~i~~v~k~lk~~g--~~kkIGv~GfCwGak~vv~ 136 (242)
T KOG3043|consen 59 GADKVALNGYTVLVPDFFRGDPWSPSLQKSERPEWMKGHSPPKIWKDITAVVKWLKNHG--DSKKIGVVGFCWGAKVVVT 136 (242)
T ss_pred HHHHHhcCCcEEEcchhhcCCCCCCCCChhhhHHHHhcCCcccchhHHHHHHHHHHHcC--CcceeeEEEEeecceEEEE
Confidence 35567789999999888643211111 111222 2345788999999999765 4679999999999999999
Q ss_pred HHHhCCCcccEEEEcccCCCCCCCCcCcccccchhhhhHHHHHhcCcccccCCCCCcEEEEEeCCCCCCCCchHHHHHHH
Q 002209 776 LLAHAPHLFCCGIARSGAYNRTLTPFGFQNEDRTLWEATSTYVEMSPFMSANKLKKPILLVHGEEDNNSGTLTMQSDRFF 855 (953)
Q Consensus 776 ~a~~~p~~~~a~v~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~sp~~~~~~i~~P~Li~~G~~D~~v~~~~~~~~~~~ 855 (953)
+.+..| .|.|+++..|.+- + ..-+.++++|+|++.|+.|..+| +....++.
T Consensus 137 ~~~~~~-~f~a~v~~hps~~-------------------------d-~~D~~~vk~Pilfl~ae~D~~~p--~~~v~~~e 187 (242)
T KOG3043|consen 137 LSAKDP-EFDAGVSFHPSFV-------------------------D-SADIANVKAPILFLFAELDEDVP--PKDVKAWE 187 (242)
T ss_pred eeccch-hheeeeEecCCcC-------------------------C-hhHHhcCCCCEEEEeecccccCC--HHHHHHHH
Confidence 888886 7999988877421 0 12345678999999999999998 88888888
Q ss_pred HHHHhCCC-cEEEEEeCCCCccCCCc----------ccHHHHHHHHHHHHHHhc
Q 002209 856 NALKGHGA-LCRLVILPFESHGYAAR----------ESIMHVLWETDRWLQKYC 898 (953)
Q Consensus 856 ~~l~~~g~-~~~~~~~~~~~H~~~~~----------~~~~~~~~~i~~fl~~~l 898 (953)
++++.... ..++.+|+|.+|+|..+ ...++.++.+..||.+|+
T Consensus 188 e~lk~~~~~~~~v~~f~g~~HGf~~~r~~~~~Ped~~~~eea~~~~~~Wf~~y~ 241 (242)
T KOG3043|consen 188 EKLKENPAVGSQVKTFSGVGHGFVARRANISSPEDKKAAEEAYQRFISWFKHYL 241 (242)
T ss_pred HHHhcCcccceeEEEcCCccchhhhhccCCCChhHHHHHHHHHHHHHHHHHHhh
Confidence 88886532 35789999999998631 124678889999999987
No 123
>PRK07581 hypothetical protein; Validated
Probab=99.31 E-value=4.9e-11 Score=131.79 Aligned_cols=181 Identities=12% Similarity=0.044 Sum_probs=112.3
Q ss_pred HHHHcCcEEEEcCCCCCCCCCChhhhhh----h-H-----HHHHHHHHHHHHHHHHcCCCCCCc-EEEEEeChHHHHHHH
Q 002209 707 LWLARGFAILGGPTTPIIGEGDEEANDR----F-V-----EQLVACAEAAVEEVVRRGVAHPSK-IAVGGHSYGAFMTAN 775 (953)
Q Consensus 707 ~la~~G~~V~~~~~~~~~G~G~~~~~~~----~-~-----~~~~~D~~~~~~~l~~~~~~d~~~-i~l~G~S~GG~~a~~ 775 (953)
.|...+|.|+++ |.+|+|.+..+.. + . ....+|+.+....+.+.-. .++ ..|+||||||++++.
T Consensus 66 ~l~~~~~~vi~~---D~~G~G~S~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~lg--i~~~~~lvG~S~GG~va~~ 140 (339)
T PRK07581 66 ALDPEKYFIIIP---NMFGNGLSSSPSNTPAPFNAARFPHVTIYDNVRAQHRLLTEKFG--IERLALVVGWSMGAQQTYH 140 (339)
T ss_pred ccCcCceEEEEe---cCCCCCCCCCCCCCCCCCCCCCCCceeHHHHHHHHHHHHHHHhC--CCceEEEEEeCHHHHHHHH
Confidence 345678999994 5567777643211 1 0 1134555544444544222 357 478999999999999
Q ss_pred HHHhCCCcccEEEEcccCCCCCC----------------CCc---Cccc--c---------c------chhhh-------
Q 002209 776 LLAHAPHLFCCGIARSGAYNRTL----------------TPF---GFQN--E---------D------RTLWE------- 812 (953)
Q Consensus 776 ~a~~~p~~~~a~v~~~~~~d~~~----------------~~~---~~~~--~---------~------~~~~~------- 812 (953)
++.++|++++++|++++...... ..+ .+.. . . ...+.
T Consensus 141 ~a~~~P~~V~~Lvli~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 220 (339)
T PRK07581 141 WAVRYPDMVERAAPIAGTAKTTPHNFVFLEGLKAALTADPAFNGGWYAEPPERGLRAHARVYAGWGFSQAFYRQELWRAM 220 (339)
T ss_pred HHHHCHHHHhhheeeecCCCCCHHHHHHHHHHHHHHHhCCCCCCCCCCCcHHHHHHHHHHHHHHHHhHHHHHHhhhcccc
Confidence 99999999999998865321000 000 0000 0 0 00000
Q ss_pred ---h-HH---HH-Hh----cC-------------------------cccccCCCCCcEEEEEeCCCCCCCCchHHHHHHH
Q 002209 813 ---A-TS---TY-VE----MS-------------------------PFMSANKLKKPILLVHGEEDNNSGTLTMQSDRFF 855 (953)
Q Consensus 813 ---~-~~---~~-~~----~s-------------------------p~~~~~~i~~P~Li~~G~~D~~v~~~~~~~~~~~ 855 (953)
. .+ .+ .. .+ ....+.++++|+|+++|++|..+| +..+..+.
T Consensus 221 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~d~~~~L~~I~~PtLvI~G~~D~~~p--~~~~~~l~ 298 (339)
T PRK07581 221 GYASLEDFLVGFWEGNFLPRDPNNLLAMLWTWQRGDISRNPAYGGDLAAALGSITAKTFVMPISTDLYFP--PEDCEAEA 298 (339)
T ss_pred ChhhHHHHHHHHHHHhhcccCcccHHHHHHHhhhcccccCcccCCCHHHHHhcCCCCEEEEEeCCCCCCC--HHHHHHHH
Confidence 0 00 00 00 00 112345688999999999999998 88887776
Q ss_pred HHHHhCCCcEEEEEeCC-CCccCCCcccHHHHHHHHHHHHHHhcc
Q 002209 856 NALKGHGALCRLVILPF-ESHGYAARESIMHVLWETDRWLQKYCV 899 (953)
Q Consensus 856 ~~l~~~g~~~~~~~~~~-~~H~~~~~~~~~~~~~~i~~fl~~~l~ 899 (953)
+.+.. .+++++++ +||.. ..+....+...+.+|+.+++.
T Consensus 299 ~~ip~----a~l~~i~~~~GH~~-~~~~~~~~~~~~~~~~~~~~~ 338 (339)
T PRK07581 299 ALIPN----AELRPIESIWGHLA-GFGQNPADIAFIDAALKELLA 338 (339)
T ss_pred HhCCC----CeEEEeCCCCCccc-cccCcHHHHHHHHHHHHHHHh
Confidence 66643 48889998 89976 356667888999999999873
No 124
>COG0429 Predicted hydrolase of the alpha/beta-hydrolase fold [General function prediction only]
Probab=99.30 E-value=7.6e-11 Score=120.27 Aligned_cols=229 Identities=16% Similarity=0.135 Sum_probs=138.5
Q ss_pred EEEcCCCcEEEEEEEcCCCCCCCCCCCccEEEEeCCCCCcCcCCCCcccCCCCCCCCccchHHHHHHHcCcEEEEcCCCC
Q 002209 643 KYQRKDGVQLSATLYLPPGYDPSKDGPLPCLFWSYPGEFKSKDAAGQVRGSPNEFPRIGSTSVLLWLARGFAILGGPTTP 722 (953)
Q Consensus 643 ~~~~~dg~~~~~~l~~P~~~~~~~~~~~P~vv~~hGg~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~G~~V~~~~~~~ 722 (953)
.++..||..+...+..++. ....|+||.+||-. |+.+. .+-......+.++||.|+..+.
T Consensus 53 ~v~~pdg~~~~ldw~~~p~-----~~~~P~vVl~HGL~-----------G~s~s--~y~r~L~~~~~~rg~~~Vv~~~-- 112 (345)
T COG0429 53 RLETPDGGFIDLDWSEDPR-----AAKKPLVVLFHGLE-----------GSSNS--PYARGLMRALSRRGWLVVVFHF-- 112 (345)
T ss_pred EEEcCCCCEEEEeeccCcc-----ccCCceEEEEeccC-----------CCCcC--HHHHHHHHHHHhcCCeEEEEec--
Confidence 4555677666655555432 12269999999932 21111 1222345566789999999555
Q ss_pred CCCCCChhh--hhhhHHHHHHHHHHHHHHHHHcCCCCCCcEEEEEeChHH-HHHHHHHHhCC-CcccEEEEcccCCCCCC
Q 002209 723 IIGEGDEEA--NDRFVEQLVACAEAAVEEVVRRGVAHPSKIAVGGHSYGA-FMTANLLAHAP-HLFCCGIARSGAYNRTL 798 (953)
Q Consensus 723 ~~G~G~~~~--~~~~~~~~~~D~~~~~~~l~~~~~~d~~~i~l~G~S~GG-~~a~~~a~~~p-~~~~a~v~~~~~~d~~~ 798 (953)
+|.+.+.. +.-+.....+|+..+++++.++.. +.++..+|.|+|| +++.+++-.-- -.+.|+++++..+|...
T Consensus 113 -Rgcs~~~n~~p~~yh~G~t~D~~~~l~~l~~~~~--~r~~~avG~SLGgnmLa~ylgeeg~d~~~~aa~~vs~P~Dl~~ 189 (345)
T COG0429 113 -RGCSGEANTSPRLYHSGETEDIRFFLDWLKARFP--PRPLYAVGFSLGGNMLANYLGEEGDDLPLDAAVAVSAPFDLEA 189 (345)
T ss_pred -ccccCCcccCcceecccchhHHHHHHHHHHHhCC--CCceEEEEecccHHHHHHHHHhhccCcccceeeeeeCHHHHHH
Confidence 55544421 233445567999999999988643 5799999999999 55555544321 13566666655443110
Q ss_pred ------CCcC--------------------------ccc-------ccchhhh--------------hHHHHHhcCcccc
Q 002209 799 ------TPFG--------------------------FQN-------EDRTLWE--------------ATSTYVEMSPFMS 825 (953)
Q Consensus 799 ------~~~~--------------------------~~~-------~~~~~~~--------------~~~~~~~~sp~~~ 825 (953)
..+. ... ..++.|+ ..+.|...|.+..
T Consensus 190 ~~~~l~~~~s~~ly~r~l~~~L~~~~~~kl~~l~~~~p~~~~~~ik~~~ti~eFD~~~Tap~~Gf~da~dYYr~aSs~~~ 269 (345)
T COG0429 190 CAYRLDSGFSLRLYSRYLLRNLKRNAARKLKELEPSLPGTVLAAIKRCRTIREFDDLLTAPLHGFADAEDYYRQASSLPL 269 (345)
T ss_pred HHHHhcCchhhhhhHHHHHHHHHHHHHHHHHhcCcccCcHHHHHHHhhchHHhccceeeecccCCCcHHHHHHhcccccc
Confidence 0000 000 0012222 2466777899999
Q ss_pred cCCCCCcEEEEEeCCCCCCCCchHHHHHHHHHHHhCCCcEEEEEeCCCCccC-CC-cc-cHH-HHHHHHHHHHHHhcc
Q 002209 826 ANKLKKPILLVHGEEDNNSGTLTMQSDRFFNALKGHGALCRLVILPFESHGY-AA-RE-SIM-HVLWETDRWLQKYCV 899 (953)
Q Consensus 826 ~~~i~~P~Li~~G~~D~~v~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~H~~-~~-~~-~~~-~~~~~i~~fl~~~l~ 899 (953)
+.+|.+|+||+|..+|++++ +.. .--.+.. ....+.+.+.+.+||.- .. .. +.. -.-+++.+||+.++.
T Consensus 270 L~~Ir~PtLii~A~DDP~~~--~~~-iP~~~~~--~np~v~l~~t~~GGHvGfl~~~~~~~~~W~~~ri~~~l~~~~~ 342 (345)
T COG0429 270 LPKIRKPTLIINAKDDPFMP--PEV-IPKLQEM--LNPNVLLQLTEHGGHVGFLGGKLLHPQMWLEQRILDWLDPFLE 342 (345)
T ss_pred ccccccceEEEecCCCCCCC--hhh-CCcchhc--CCCceEEEeecCCceEEeccCccccchhhHHHHHHHHHHHHHh
Confidence 99999999999999999987 432 1111111 34568899999899952 22 11 111 344578999998763
No 125
>KOG0291 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=99.30 E-value=6.9e-10 Score=122.18 Aligned_cols=228 Identities=11% Similarity=0.121 Sum_probs=144.0
Q ss_pred CCCCceecCCCCEEEEEecCCCCCccccccccceeceEEecCCCCCCcceeeeeceEEEEccCCCCCCceeeeecCCCCC
Q 002209 110 PLPALSFSPQRDKILFLKRRALPPLEELARPEEKLAGLRIDGKCNTRSRMSFYTGIGIHQLFPDGKLGQEIEIQGFPDGA 189 (953)
Q Consensus 110 ~~~~~~~SPDG~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~i~~~~~~g~~~~~~~l~~~~~~~ 189 (953)
.+..++|+--|.||||.... . ++|-||+... +.--+..-.+-.
T Consensus 309 ~I~t~~~N~tGDWiA~g~~k--------------------------l------gQLlVweWqs-----EsYVlKQQgH~~ 351 (893)
T KOG0291|consen 309 KILTVSFNSTGDWIAFGCSK--------------------------L------GQLLVWEWQS-----ESYVLKQQGHSD 351 (893)
T ss_pred eeeEEEecccCCEEEEcCCc--------------------------c------ceEEEEEeec-----cceeeecccccc
Confidence 56678888889999998763 1 2566666632 112222111223
Q ss_pred cccceEeccCCCeEEEEEeeccccCCCCcceEEEEECCCCceeecccCCCccccccccceEEecCCeEEEEEecCCCCCC
Q 002209 190 KLNFVTWSQDGKHLAFSIRIDAEDSSSSKLRVWVADVDTGKARPLFQSPDIYLNAIFDNFVWVNNSTLLVCTIPLLRGDP 269 (953)
Q Consensus 190 ~~~~~~wSPDG~~laf~~~~~~~~~~~~~~~l~~~d~~~g~~~~lt~~~~~~~~~~~~~~~wspDg~~l~~~~~~~~~~~ 269 (953)
.+....+||||+.||... +...+-+||..+|-+..-...+.. .+..+.|+.+|+.|+.++-
T Consensus 352 ~i~~l~YSpDgq~iaTG~---------eDgKVKvWn~~SgfC~vTFteHts----~Vt~v~f~~~g~~llssSL------ 412 (893)
T KOG0291|consen 352 RITSLAYSPDGQLIATGA---------EDGKVKVWNTQSGFCFVTFTEHTS----GVTAVQFTARGNVLLSSSL------ 412 (893)
T ss_pred ceeeEEECCCCcEEEecc---------CCCcEEEEeccCceEEEEeccCCC----ceEEEEEEecCCEEEEeec------
Confidence 688899999999999843 466788888888876533222222 2778999999999987621
Q ss_pred CCCCCCCCCCceeecCCCccccchhhhhhcCCcchhhhhhhhccceEEEEEc-CC-ceeEeCCC--CcccccccCCCCcE
Q 002209 270 PKKPLVPLGPKMQSNEKRDIIQVRTFQDLLKDEYDEDLFDYYATTQLVLVSL-DG-TVKEIGPP--AVYTSLDPSPDEKY 345 (953)
Q Consensus 270 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~l~~~~~-~g-~~~~l~~~--~~~~~~~~SpDG~~ 345 (953)
.+.+..+|+ .+ .-+.++.+ .....++..|.|..
T Consensus 413 -------------------------------------------DGtVRAwDlkRYrNfRTft~P~p~QfscvavD~sGel 449 (893)
T KOG0291|consen 413 -------------------------------------------DGTVRAWDLKRYRNFRTFTSPEPIQFSCVAVDPSGEL 449 (893)
T ss_pred -------------------------------------------CCeEEeeeecccceeeeecCCCceeeeEEEEcCCCCE
Confidence 122334455 33 33444444 45566777777975
Q ss_pred EEEEEecCCccccccCCCCCcceEEEeccCceEEEe-ccCCCcccCCccccccccCccceeeccCCCCceEEEEeccCCC
Q 002209 346 ILISSIHRPYSFIVPCGRFPRQVGVWTTDGIFVREL-CDLPLAEDIPIAFNSVRKGMRSINWRSDKPSTLYWAETQDGGD 424 (953)
Q Consensus 346 l~~~~~~~~~~~~~~~~~~~~~i~~~d~~g~~~~~l-~~~~~~~~~p~~~~~~~~~~~~~~wspDg~~i~~~~~~~~~~~ 424 (953)
+.....+ .-+|++|++.+|+...+ ..+. +-+..+.|+|+|..|+-.
T Consensus 450 V~AG~~d------------~F~IfvWS~qTGqllDiLsGHE-------------gPVs~l~f~~~~~~LaS~-------- 496 (893)
T KOG0291|consen 450 VCAGAQD------------SFEIFVWSVQTGQLLDILSGHE-------------GPVSGLSFSPDGSLLASG-------- 496 (893)
T ss_pred EEeeccc------------eEEEEEEEeecCeeeehhcCCC-------------CcceeeEEccccCeEEec--------
Confidence 5544422 13899999997766543 3332 234578899999966544
Q ss_pred cccccccCCeEEEEecCCCCC-CCceEEeecccccCCeeeccCCceEEEEEecc
Q 002209 425 AKVEVTPRDIIYTQQAEPVQG-EGPEILHKLDLRYGGISWCDDSLALVYESWYK 477 (953)
Q Consensus 425 ~~~~~~~~~~l~~~d~~~~~g-~~~~~l~~~~~~~~~~~~SpDg~~l~~~~~~~ 477 (953)
+-...|.+|+. .+. ++.+.+ ....++..++|+|||+.|+.+.-++
T Consensus 497 -----SWDkTVRiW~i--f~s~~~vEtl-~i~sdvl~vsfrPdG~elaVaTldg 542 (893)
T KOG0291|consen 497 -----SWDKTVRIWDI--FSSSGTVETL-EIRSDVLAVSFRPDGKELAVATLDG 542 (893)
T ss_pred -----cccceEEEEEe--eccCceeeeE-eeccceeEEEEcCCCCeEEEEEecc
Confidence 33456778876 332 333333 3344567799999999999876543
No 126
>KOG1446 consensus Histone H3 (Lys4) methyltransferase complex and RNA cleavage factor II complex, subunit SWD2 [RNA processing and modification; Chromatin structure and dynamics; Posttranslational modification, protein turnover, chaperones]
Probab=99.30 E-value=1.8e-09 Score=108.03 Aligned_cols=253 Identities=15% Similarity=0.196 Sum_probs=161.4
Q ss_pred CcccceEeccCCCeEEEEEeeccccCCCCcceEEEEECCCCceeecccCCCccccccccceEEecCCeEEEEEecCCCCC
Q 002209 189 AKLNFVTWSQDGKHLAFSIRIDAEDSSSSKLRVWVADVDTGKARPLFQSPDIYLNAIFDNFVWVNNSTLLVCTIPLLRGD 268 (953)
Q Consensus 189 ~~~~~~~wSPDG~~laf~~~~~~~~~~~~~~~l~~~d~~~g~~~~lt~~~~~~~~~~~~~~~wspDg~~l~~~~~~~~~~ 268 (953)
..+....||+||..++.... ...|.++|...|+..+.......+ +..+.|......+.++
T Consensus 15 ~~i~sl~fs~~G~~litss~---------dDsl~LYd~~~g~~~~ti~skkyG----~~~~~Fth~~~~~i~s------- 74 (311)
T KOG1446|consen 15 GKINSLDFSDDGLLLITSSE---------DDSLRLYDSLSGKQVKTINSKKYG----VDLACFTHHSNTVIHS------- 74 (311)
T ss_pred CceeEEEecCCCCEEEEecC---------CCeEEEEEcCCCceeeEeeccccc----ccEEEEecCCceEEEc-------
Confidence 46888999999999998553 457888898888877666655433 6677787555555544
Q ss_pred CCCCCCCCCCCceeecCCCccccchhhhhhcCCcchhhhhhhhccceEEEEEc-CCceeEeCC-C-CcccccccCCCCcE
Q 002209 269 PPKKPLVPLGPKMQSNEKRDIIQVRTFQDLLKDEYDEDLFDYYATTQLVLVSL-DGTVKEIGP-P-AVYTSLDPSPDEKY 345 (953)
Q Consensus 269 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~l~~~~~-~g~~~~l~~-~-~~~~~~~~SpDG~~ 345 (953)
++. ....|..+++ +.+..+... . ..+.++..||-+..
T Consensus 75 -------------------------------Stk---------~d~tIryLsl~dNkylRYF~GH~~~V~sL~~sP~~d~ 114 (311)
T KOG1446|consen 75 -------------------------------STK---------EDDTIRYLSLHDNKYLRYFPGHKKRVNSLSVSPKDDT 114 (311)
T ss_pred -------------------------------cCC---------CCCceEEEEeecCceEEEcCCCCceEEEEEecCCCCe
Confidence 111 1135667788 665444444 3 78899999998887
Q ss_pred EEEEEecCCccccccCCCCCcceEEEeccCceEEEeccCCCcccCCccccccccCccceeeccCCCCceEEEEeccCCCc
Q 002209 346 ILISSIHRPYSFIVPCGRFPRQVGVWTTDGIFVRELCDLPLAEDIPIAFNSVRKGMRSINWRSDKPSTLYWAETQDGGDA 425 (953)
Q Consensus 346 l~~~~~~~~~~~~~~~~~~~~~i~~~d~~g~~~~~l~~~~~~~~~p~~~~~~~~~~~~~~wspDg~~i~~~~~~~~~~~~ 425 (953)
.+-++.++ .|.+||+......-+.... +..-.+|.|.| ++|.+.
T Consensus 115 FlS~S~D~-------------tvrLWDlR~~~cqg~l~~~--------------~~pi~AfDp~G--LifA~~------- 158 (311)
T KOG1446|consen 115 FLSSSLDK-------------TVRLWDLRVKKCQGLLNLS--------------GRPIAAFDPEG--LIFALA------- 158 (311)
T ss_pred EEecccCC-------------eEEeeEecCCCCceEEecC--------------CCcceeECCCC--cEEEEe-------
Confidence 77776554 8999999854433222211 11236788988 445411
Q ss_pred ccccccCCeEEEEecCCCCCCCceEE--e-ecccccCCeeeccCCceEEEEEecccCceEEEEEcCCCCCCCcEEeecCC
Q 002209 426 KVEVTPRDIIYTQQAEPVQGEGPEIL--H-KLDLRYGGISWCDDSLALVYESWYKTRRTRTWVISPGSKDVAPRILFDRS 502 (953)
Q Consensus 426 ~~~~~~~~~l~~~d~~~~~g~~~~~l--~-~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~ 502 (953)
.+.+.|.++|+...+.|..+.. . ........+.||||||.|+.+.+.+ .++++|.-.|. -...+....
T Consensus 159 ----~~~~~IkLyD~Rs~dkgPF~tf~i~~~~~~ew~~l~FS~dGK~iLlsT~~s----~~~~lDAf~G~-~~~tfs~~~ 229 (311)
T KOG1446|consen 159 ----NGSELIKLYDLRSFDKGPFTTFSITDNDEAEWTDLEFSPDGKSILLSTNAS----FIYLLDAFDGT-VKSTFSGYP 229 (311)
T ss_pred ----cCCCeEEEEEecccCCCCceeEccCCCCccceeeeEEcCCCCEEEEEeCCC----cEEEEEccCCc-EeeeEeecc
Confidence 3344788888743444443333 2 2233456799999999999886543 68888887763 111111111
Q ss_pred CccccCCCCCCCeEeccCCCEEEEEeeeccCCCcEEEEecCCCCCCCCCCeEEEEECCCCceEEEeccC
Q 002209 503 SEDVYSDPGSPMMRRTSTGTYVIAKIKKENDEGTYILLNGNGATPEGNIPFLDLFDINTGSKERIWESD 571 (953)
Q Consensus 503 ~~~~~~~~~~p~~~~SpDG~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~d~~~~~~~~l~~~~ 571 (953)
... ..+ -...|+|||++++....+ .+|++|++++|+....|.+.
T Consensus 230 ~~~--~~~--~~a~ftPds~Fvl~gs~d---------------------g~i~vw~~~tg~~v~~~~~~ 273 (311)
T KOG1446|consen 230 NAG--NLP--LSATFTPDSKFVLSGSDD---------------------GTIHVWNLETGKKVAVLRGP 273 (311)
T ss_pred CCC--Ccc--eeEEECCCCcEEEEecCC---------------------CcEEEEEcCCCcEeeEecCC
Confidence 111 000 116799999999877632 24999999999988887775
No 127
>PLN02578 hydrolase
Probab=99.30 E-value=9.8e-11 Score=129.78 Aligned_cols=170 Identities=19% Similarity=0.171 Sum_probs=107.3
Q ss_pred HHcCcEEEEcCCCCCCCCCChhhhh-h-hHHHHHHHHHHHHHHHHHcCCCCCCcEEEEEeChHHHHHHHHHHhCCCcccE
Q 002209 709 LARGFAILGGPTTPIIGEGDEEAND-R-FVEQLVACAEAAVEEVVRRGVAHPSKIAVGGHSYGAFMTANLLAHAPHLFCC 786 (953)
Q Consensus 709 a~~G~~V~~~~~~~~~G~G~~~~~~-~-~~~~~~~D~~~~~~~l~~~~~~d~~~i~l~G~S~GG~~a~~~a~~~p~~~~a 786 (953)
.+++|.|+++| ..|+|.+.... . ......+|+.+.++.+. .+++.++|||+||++++.++.++|+++++
T Consensus 109 l~~~~~v~~~D---~~G~G~S~~~~~~~~~~~~a~~l~~~i~~~~------~~~~~lvG~S~Gg~ia~~~A~~~p~~v~~ 179 (354)
T PLN02578 109 LAKKYKVYALD---LLGFGWSDKALIEYDAMVWRDQVADFVKEVV------KEPAVLVGNSLGGFTALSTAVGYPELVAG 179 (354)
T ss_pred HhcCCEEEEEC---CCCCCCCCCcccccCHHHHHHHHHHHHHHhc------cCCeEEEEECHHHHHHHHHHHhChHhcce
Confidence 35679999955 45777764432 1 12333455555555542 35899999999999999999999999999
Q ss_pred EEEcccCCCCCCCC------------cC---cccc----------------cc--h--------hhhh------------
Q 002209 787 GIARSGAYNRTLTP------------FG---FQNE----------------DR--T--------LWEA------------ 813 (953)
Q Consensus 787 ~v~~~~~~d~~~~~------------~~---~~~~----------------~~--~--------~~~~------------ 813 (953)
+|++++........ .. +... .. . .+.+
T Consensus 180 lvLv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 259 (354)
T PLN02578 180 VALLNSAGQFGSESREKEEAIVVEETVLTRFVVKPLKEWFQRVVLGFLFWQAKQPSRIESVLKSVYKDKSNVDDYLVESI 259 (354)
T ss_pred EEEECCCccccccccccccccccccchhhHHHhHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHhcCCcccCCHHHHHHH
Confidence 99886532110000 00 0000 00 0 0000
Q ss_pred ---------HHHHH-----------hcCcccccCCCCCcEEEEEeCCCCCCCCchHHHHHHHHHHHhCCCcEEEEEeCCC
Q 002209 814 ---------TSTYV-----------EMSPFMSANKLKKPILLVHGEEDNNSGTLTMQSDRFFNALKGHGALCRLVILPFE 873 (953)
Q Consensus 814 ---------~~~~~-----------~~sp~~~~~~i~~P~Li~~G~~D~~v~~~~~~~~~~~~~l~~~g~~~~~~~~~~~ 873 (953)
.+.+. .......+.++++|+|+++|++|..|| ...+.++.+.+.. .+++++ ++
T Consensus 260 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~i~~PvLiI~G~~D~~v~--~~~~~~l~~~~p~----a~l~~i-~~ 332 (354)
T PLN02578 260 TEPAADPNAGEVYYRLMSRFLFNQSRYTLDSLLSKLSCPLLLLWGDLDPWVG--PAKAEKIKAFYPD----TTLVNL-QA 332 (354)
T ss_pred HhcccCCchHHHHHHHHHHHhcCCCCCCHHHHhhcCCCCEEEEEeCCCCCCC--HHHHHHHHHhCCC----CEEEEe-CC
Confidence 00000 001123456789999999999999988 8887777666543 467777 47
Q ss_pred CccCCCcccHHHHHHHHHHHHH
Q 002209 874 SHGYAARESIMHVLWETDRWLQ 895 (953)
Q Consensus 874 ~H~~~~~~~~~~~~~~i~~fl~ 895 (953)
||... .+..+.+.+.+.+|++
T Consensus 333 GH~~~-~e~p~~~~~~I~~fl~ 353 (354)
T PLN02578 333 GHCPH-DEVPEQVNKALLEWLS 353 (354)
T ss_pred CCCcc-ccCHHHHHHHHHHHHh
Confidence 99874 6777888899999975
No 128
>KOG0272 consensus U4/U6 small nuclear ribonucleoprotein Prp4 (contains WD40 repeats) [RNA processing and modification]
Probab=99.30 E-value=9.3e-11 Score=120.76 Aligned_cols=228 Identities=16% Similarity=0.150 Sum_probs=142.4
Q ss_pred CcccceEeccCCCeEEEEEeeccccCCCCcceEEEEECCCCceeecccCCCccccccccceEEecC--CeEEEEEecCCC
Q 002209 189 AKLNFVTWSQDGKHLAFSIRIDAEDSSSSKLRVWVADVDTGKARPLFQSPDIYLNAIFDNFVWVNN--STLLVCTIPLLR 266 (953)
Q Consensus 189 ~~~~~~~wSPDG~~laf~~~~~~~~~~~~~~~l~~~d~~~g~~~~lt~~~~~~~~~~~~~~~wspD--g~~l~~~~~~~~ 266 (953)
..+....||+||+.|+..+- +|...||-++ .....+........ +..+.|.|. +..|+..+
T Consensus 176 rPis~~~fS~ds~~laT~sw-------sG~~kvW~~~--~~~~~~~l~gH~~~----v~~~~fhP~~~~~~lat~s---- 238 (459)
T KOG0272|consen 176 RPISGCSFSRDSKHLATGSW-------SGLVKVWSVP--QCNLLQTLRGHTSR----VGAAVFHPVDSDLNLATAS---- 238 (459)
T ss_pred CcceeeEeecCCCeEEEeec-------CCceeEeecC--CcceeEEEeccccc----eeeEEEccCCCccceeeec----
Confidence 36777899999999998663 3455666544 44444444433333 778999998 44565441
Q ss_pred CCCCCCCCCCCCCceeecCCCccccchhhhhhcCCcchhhhhhhhccceEEEEEcCCceeEeCCC-CcccccccCCCCcE
Q 002209 267 GDPPKKPLVPLGPKMQSNEKRDIIQVRTFQDLLKDEYDEDLFDYYATTQLVLVSLDGTVKEIGPP-AVYTSLDPSPDEKY 345 (953)
Q Consensus 267 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~l~~~~~~g~~~~l~~~-~~~~~~~~SpDG~~ 345 (953)
.| +.-.||.++-.-....++.. ..+..++|.|+|++
T Consensus 239 ------------------------------------~D-------gtvklw~~~~e~~l~~l~gH~~RVs~VafHPsG~~ 275 (459)
T KOG0272|consen 239 ------------------------------------AD-------GTVKLWKLSQETPLQDLEGHLARVSRVAFHPSGKF 275 (459)
T ss_pred ------------------------------------cC-------CceeeeccCCCcchhhhhcchhhheeeeecCCCce
Confidence 11 33345544433345556555 77889999999999
Q ss_pred EEEEEecCCccccccCCCCCcceEEEeccCceEEEeccCCCcccCCccccccccCccceeeccCCCCceEEEEeccCCCc
Q 002209 346 ILISSIHRPYSFIVPCGRFPRQVGVWTTDGIFVRELCDLPLAEDIPIAFNSVRKGMRSINWRSDKPSTLYWAETQDGGDA 425 (953)
Q Consensus 346 l~~~~~~~~~~~~~~~~~~~~~i~~~d~~g~~~~~l~~~~~~~~~p~~~~~~~~~~~~~~wspDg~~i~~~~~~~~~~~~ 425 (953)
|+.++.+. .-.+||+.++..-.+.. ++..++.+++|.|||..++-.
T Consensus 276 L~TasfD~-------------tWRlWD~~tk~ElL~QE------------GHs~~v~~iaf~~DGSL~~tG--------- 321 (459)
T KOG0272|consen 276 LGTASFDS-------------TWRLWDLETKSELLLQE------------GHSKGVFSIAFQPDGSLAATG--------- 321 (459)
T ss_pred eeeccccc-------------chhhcccccchhhHhhc------------ccccccceeEecCCCceeecc---------
Confidence 99888554 66789998654322221 334677899999999844332
Q ss_pred ccccccCCeEEEEecCCCCCCCceEEeecccccCCeeeccCCceEEEEEecccCceEEEEEcCCCCCCCcEEeecCCCcc
Q 002209 426 KVEVTPRDIIYTQQAEPVQGEGPEILHKLDLRYGGISWCDDSLALVYESWYKTRRTRTWVISPGSKDVAPRILFDRSSED 505 (953)
Q Consensus 426 ~~~~~~~~~l~~~d~~~~~g~~~~~l~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~ 505 (953)
+-...-.+||+ -+|...-.|..+...+.++.|||+|-.|+..+.+++. ++|.+.... ....+ ..+...
T Consensus 322 ----GlD~~~RvWDl--Rtgr~im~L~gH~k~I~~V~fsPNGy~lATgs~Dnt~--kVWDLR~r~---~ly~i-pAH~nl 389 (459)
T KOG0272|consen 322 ----GLDSLGRVWDL--RTGRCIMFLAGHIKEILSVAFSPNGYHLATGSSDNTC--KVWDLRMRS---ELYTI-PAHSNL 389 (459)
T ss_pred ----Cccchhheeec--ccCcEEEEecccccceeeEeECCCceEEeecCCCCcE--EEeeecccc---cceec-ccccch
Confidence 11223356775 3454444556677778899999999999988776644 777765433 22222 222222
Q ss_pred ccCCCCCCCeEecc-CCCEEEEEe
Q 002209 506 VYSDPGSPMMRRTS-TGTYVIAKI 528 (953)
Q Consensus 506 ~~~~~~~p~~~~Sp-DG~~l~~~~ 528 (953)
+.. +.|+| .|.+|+...
T Consensus 390 VS~------Vk~~p~~g~fL~Tas 407 (459)
T KOG0272|consen 390 VSQ------VKYSPQEGYFLVTAS 407 (459)
T ss_pred hhh------eEecccCCeEEEEcc
Confidence 222 78998 556666554
No 129
>KOG3101 consensus Esterase D [General function prediction only]
Probab=99.29 E-value=2.4e-11 Score=113.73 Aligned_cols=213 Identities=17% Similarity=0.196 Sum_probs=140.2
Q ss_pred CcEEEEEEEcCCCCCCCCCCCccEEEEeCCCCCcCcCCCCcccCCCCCCCCccchHHHHHHHcCcEEEEcCCCCC----C
Q 002209 649 GVQLSATLYLPPGYDPSKDGPLPCLFWSYPGEFKSKDAAGQVRGSPNEFPRIGSTSVLLWLARGFAILGGPTTPI----I 724 (953)
Q Consensus 649 g~~~~~~l~~P~~~~~~~~~~~P~vv~~hGg~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~G~~V~~~~~~~~----~ 724 (953)
+-.+.--+|+|+.+..+| +.|++.|+-|-. .....|..-. .+.+.-.+.|++|+.||.-+. .
T Consensus 25 ~c~Mtf~vylPp~a~~~k--~~P~lf~LSGLT-----------CT~~Nfi~Ks-g~qq~As~hgl~vV~PDTSPRG~~v~ 90 (283)
T KOG3101|consen 25 KCSMTFGVYLPPDAPRGK--RCPVLFYLSGLT-----------CTHENFIEKS-GFQQQASKHGLAVVAPDTSPRGVEVA 90 (283)
T ss_pred ccceEEEEecCCCcccCC--cCceEEEecCCc-----------ccchhhHhhh-hHHHhHhhcCeEEECCCCCCCccccC
Confidence 345777889998866555 499999998832 2222222111 112233568999999775221 1
Q ss_pred CCCCh--------hh----hhhhH--HHHHHHHHH-HHHHHH-HcCCCCCCcEEEEEeChHHHHHHHHHHhCCCcccEEE
Q 002209 725 GEGDE--------EA----NDRFV--EQLVACAEA-AVEEVV-RRGVAHPSKIAVGGHSYGAFMTANLLAHAPHLFCCGI 788 (953)
Q Consensus 725 G~G~~--------~~----~~~~~--~~~~~D~~~-~~~~l~-~~~~~d~~~i~l~G~S~GG~~a~~~a~~~p~~~~a~v 788 (953)
|..++ +. .+.|. ..+++-+.. ..+.|. ..-.+|+.+++|+||||||.-|+.++.+.|.+++.+-
T Consensus 91 g~~eswDFG~GAGFYvnAt~epw~~~yrMYdYv~kELp~~l~~~~~pld~~k~~IfGHSMGGhGAl~~~Lkn~~kykSvS 170 (283)
T KOG3101|consen 91 GDDESWDFGQGAGFYVNATQEPWAKHYRMYDYVVKELPQLLNSANVPLDPLKVGIFGHSMGGHGALTIYLKNPSKYKSVS 170 (283)
T ss_pred CCcccccccCCceeEEecccchHhhhhhHHHHHHHHHHHHhccccccccchhcceeccccCCCceEEEEEcCccccccee
Confidence 11111 00 01111 112211111 112222 1234889999999999999999999999999999999
Q ss_pred EcccCCCCCCCCcCcccccchhhhhHHHHHhcCcccccCCC---CCcEEEEEeCCCCCCCCchHH--HHHHHHHHHhC-C
Q 002209 789 ARSGAYNRTLTPFGFQNEDRTLWEATSTYVEMSPFMSANKL---KKPILLVHGEEDNNSGTLTMQ--SDRFFNALKGH-G 862 (953)
Q Consensus 789 ~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~sp~~~~~~i---~~P~Li~~G~~D~~v~~~~~~--~~~~~~~l~~~-g 862 (953)
+.+|+++....+|+-....+.+.++...|+.+++-..+++. ..-+||-+|..|...+ ++ ...+.++.++. .
T Consensus 171 AFAPI~NP~~cpWGqKAf~gYLG~~ka~W~~yDat~lik~y~~~~~~ilIdqG~~D~Fl~---~qLlPe~l~~a~~~~~~ 247 (283)
T KOG3101|consen 171 AFAPICNPINCPWGQKAFTGYLGDNKAQWEAYDATHLIKNYRGVGDDILIDQGAADNFLA---EQLLPENLLEACKATWQ 247 (283)
T ss_pred ccccccCcccCcchHHHhhcccCCChHHHhhcchHHHHHhcCCCCccEEEecCccchhhh---hhcChHHHHHHhhcccc
Confidence 99999999999998777777777777788888776555544 4569999999998753 33 35666666644 3
Q ss_pred CcEEEEEeCCCCccCC
Q 002209 863 ALCRLVILPFESHGYA 878 (953)
Q Consensus 863 ~~~~~~~~~~~~H~~~ 878 (953)
.++.+...+|-+|.+.
T Consensus 248 ~~v~~r~~~gyDHSYy 263 (283)
T KOG3101|consen 248 APVVFRLQEGYDHSYY 263 (283)
T ss_pred ccEEEEeecCCCccee
Confidence 6788888999999764
No 130
>COG2936 Predicted acyl esterases [General function prediction only]
Probab=99.29 E-value=6.3e-11 Score=131.25 Aligned_cols=240 Identities=20% Similarity=0.274 Sum_probs=155.2
Q ss_pred CceEEEEEEcCCCcEEEEEEEcCCCCCCCCCCCccEEEEeCCCCCcCcCCCCcccCCCCCCCCccchHHHHHHHcCcEEE
Q 002209 637 LQKELIKYQRKDGVQLSATLYLPPGYDPSKDGPLPCLFWSYPGEFKSKDAAGQVRGSPNEFPRIGSTSVLLWLARGFAIL 716 (953)
Q Consensus 637 ~~~~~~~~~~~dg~~~~~~l~~P~~~~~~~~~~~P~vv~~hGg~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~G~~V~ 716 (953)
+....+.++.+||++|.+.||+|++ .++.|+++..+=.|+..... ..............|+++||+|+
T Consensus 17 ~~~~~v~V~MRDGvrL~~dIy~Pa~-----~g~~Pvll~~~~~Py~k~~~-------~~~~~~~~~p~~~~~aa~GYavV 84 (563)
T COG2936 17 YIERDVMVPMRDGVRLAADIYRPAG-----AGPLPVLLSRTRLPYRKRNG-------TFGPQLSALPQPAWFAAQGYAVV 84 (563)
T ss_pred eeeeeeeEEecCCeEEEEEEEccCC-----CCCCceeEEeeccccccccc-------cCcchhhcccccceeecCceEEE
Confidence 4455678889999999999999986 35699999988444332210 00000000000126899999999
Q ss_pred EcCCCCCCCCCChhhhhhhHH-HHHHHHHHHHHHHHHcCCCCCCcEEEEEeChHHHHHHHHHHhCCCcccEEEEcccCCC
Q 002209 717 GGPTTPIIGEGDEEANDRFVE-QLVACAEAAVEEVVRRGVAHPSKIAVGGHSYGAFMTANLLAHAPHLFCCGIARSGAYN 795 (953)
Q Consensus 717 ~~~~~~~~G~G~~~~~~~~~~-~~~~D~~~~~~~l~~~~~~d~~~i~l~G~S~GG~~a~~~a~~~p~~~~a~v~~~~~~d 795 (953)
.. +.+|.|.|++...... ++.+|..+.|+||.++++.+ .+|+.+|.||+|+..+++|+..|.-.||++...+..|
T Consensus 85 ~q---DvRG~~~SeG~~~~~~~~E~~Dg~D~I~Wia~QpWsN-G~Vgm~G~SY~g~tq~~~Aa~~pPaLkai~p~~~~~D 160 (563)
T COG2936 85 NQ---DVRGRGGSEGVFDPESSREAEDGYDTIEWLAKQPWSN-GNVGMLGLSYLGFTQLAAAALQPPALKAIAPTEGLVD 160 (563)
T ss_pred Ee---cccccccCCcccceeccccccchhHHHHHHHhCCccC-CeeeeecccHHHHHHHHHHhcCCchheeecccccccc
Confidence 94 5567777776543323 58999999999999999986 6999999999999999999999989999999888766
Q ss_pred CCCC--------------CcC-----cc-----cc----------cc-hhhhh----------------------HHHHH
Q 002209 796 RTLT--------------PFG-----FQ-----NE----------DR-TLWEA----------------------TSTYV 818 (953)
Q Consensus 796 ~~~~--------------~~~-----~~-----~~----------~~-~~~~~----------------------~~~~~ 818 (953)
.... .|. .. .. .+ ..|.. .+.+.
T Consensus 161 ~y~d~~~~~G~~~~~~~~~W~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~~~~~~hp~~ddfW~ 240 (563)
T COG2936 161 RYRDDAFYGGGAELNFNLGWALTMLAPQPLTRIRPARLDRLAPLRVGAERWRDAPTELLEGEPYFLELWLEHPLRDDFWR 240 (563)
T ss_pred ccccccccCcchhhhhhHHHHhhhcccCcccccccccccccchhhhhhccccccccchhccCcccchhhhcCCCccchhh
Confidence 2110 000 00 00 00 00100 01122
Q ss_pred hcCcccccCCCCCcEEEEEeCCCCCCCCchHHHHHHHHHHHhCCCcEEEEEeCCCCccCCCccc-----HHHHHHHHHHH
Q 002209 819 EMSPFMSANKLKKPILLVHGEEDNNSGTLTMQSDRFFNALKGHGALCRLVILPFESHGYAARES-----IMHVLWETDRW 893 (953)
Q Consensus 819 ~~sp~~~~~~i~~P~Li~~G~~D~~v~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~H~~~~~~~-----~~~~~~~i~~f 893 (953)
+.+-.....++++|+|++.|-.|.. ...+.++|..++.. +.++++-|- .|....... .....+...+|
T Consensus 241 ~~~~~~d~~~i~vP~L~i~gW~D~~----l~~~~~~~~~~~~r--~~~lvvgPw-~H~~~~~~~~~~~y~~~al~~~~~~ 313 (563)
T COG2936 241 RGDRVADLSKIKVPALVIGGWSDGY----LHTAIKLFAFLRSR--PVKLVVGPW-THGGPEWEGPGKDYGATALSWQDDF 313 (563)
T ss_pred ccCcccccccCCCcEEEEccccccc----ccchHHHhhhcccC--CceeEEccc-ccCCCcccccccchhhhhhhhhHhh
Confidence 2233445677899999999999975 45677888888764 356666664 665432222 23344445566
Q ss_pred HHHhcc
Q 002209 894 LQKYCV 899 (953)
Q Consensus 894 l~~~l~ 899 (953)
|..++.
T Consensus 314 l~~~~~ 319 (563)
T COG2936 314 LDAYLD 319 (563)
T ss_pred hhHhhh
Confidence 655554
No 131
>KOG0318 consensus WD40 repeat stress protein/actin interacting protein [Cytoskeleton]
Probab=99.28 E-value=1.4e-09 Score=115.05 Aligned_cols=296 Identities=11% Similarity=0.124 Sum_probs=157.5
Q ss_pred ceEEEEccCCCCCCceeeeecCCCCCcccceEeccCCCeEEEEEeeccccCCCCcceEEEEECCCCceeecccCCCcccc
Q 002209 164 GIGIHQLFPDGKLGQEIEIQGFPDGAKLNFVTWSQDGKHLAFSIRIDAEDSSSSKLRVWVADVDTGKARPLFQSPDIYLN 243 (953)
Q Consensus 164 ~i~i~~~~~~g~~~~~~~l~~~~~~~~~~~~~wSPDG~~laf~~~~~~~~~~~~~~~l~~~d~~~g~~~~lt~~~~~~~~ 243 (953)
.++++++.. . ......+.+ ...+.-..+||.|-+||- ++....|.+||....+- +...+-..+.
T Consensus 40 sv~ir~i~~-~--~~~~iYtEH--~~~vtVAkySPsG~yiAS---------GD~sG~vRIWdtt~~~h--iLKnef~v~a 103 (603)
T KOG0318|consen 40 SVIIRNIDN-P--ASVDIYTEH--AHQVTVAKYSPSGFYIAS---------GDVSGKVRIWDTTQKEH--ILKNEFQVLA 103 (603)
T ss_pred EEEEEECCC-c--cceeeeccc--cceeEEEEeCCCceEEee---------cCCcCcEEEEeccCcce--eeeeeeeecc
Confidence 567888732 1 112222222 236777899999998876 55566777777554221 1111111122
Q ss_pred ccccceEEecCCeEEEEEecCCCCCCCCCCCCCCCCceeecCCCccc----cchhhhhhcCCcchhhhhhhhccceEE--
Q 002209 244 AIFDNFVWVNNSTLLVCTIPLLRGDPPKKPLVPLGPKMQSNEKRDII----QVRTFQDLLKDEYDEDLFDYYATTQLV-- 317 (953)
Q Consensus 244 ~~~~~~~wspDg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~d~~~~~~~~~~~l~-- 317 (953)
+.+..++|+.||++|+.+...++. .|..+.-+.+..+. ..|.+ +.- . ...++-+
T Consensus 104 G~I~Di~Wd~ds~RI~avGEGrer---------fg~~F~~DSG~SvGei~GhSr~i-----ns~---~---~KpsRPfRi 163 (603)
T KOG0318|consen 104 GPIKDISWDFDSKRIAAVGEGRER---------FGHVFLWDSGNSVGEITGHSRRI-----NSV---D---FKPSRPFRI 163 (603)
T ss_pred cccccceeCCCCcEEEEEecCccc---------eeEEEEecCCCccceeeccceeE-----eee---e---ccCCCceEE
Confidence 237799999999999977322111 11111111110000 00000 000 0 0001111
Q ss_pred -------EEEc-CCceeEeC----CC-CcccccccCCCCcEEEEEEecCCccccccCCCCCcceEEEeccC-ceEEEecc
Q 002209 318 -------LVSL-DGTVKEIG----PP-AVYTSLDPSPDEKYILISSIHRPYSFIVPCGRFPRQVGVWTTDG-IFVRELCD 383 (953)
Q Consensus 318 -------~~~~-~g~~~~l~----~~-~~~~~~~~SpDG~~l~~~~~~~~~~~~~~~~~~~~~i~~~d~~g-~~~~~l~~ 383 (953)
.+.. .|.+.++. +. ..+..+.+||||++.+.+..++ ++++||-.+ ..+..+..
T Consensus 164 ~T~sdDn~v~ffeGPPFKFk~s~r~HskFV~~VRysPDG~~Fat~gsDg-------------ki~iyDGktge~vg~l~~ 230 (603)
T KOG0318|consen 164 ATGSDDNTVAFFEGPPFKFKSSFREHSKFVNCVRYSPDGSRFATAGSDG-------------KIYIYDGKTGEKVGELED 230 (603)
T ss_pred EeccCCCeEEEeeCCCeeeeecccccccceeeEEECCCCCeEEEecCCc-------------cEEEEcCCCccEEEEecC
Confidence 1222 34333221 12 5677899999999999888554 899998864 44555654
Q ss_pred CCCcccCCccccccccCccceeeccCCCCceEEEEeccCCCcccccccCCeEEEEecCCCCCCCceEEeeccc---ccCC
Q 002209 384 LPLAEDIPIAFNSVRKGMRSINWRSDKPSTLYWAETQDGGDAKVEVTPRDIIYTQQAEPVQGEGPEILHKLDL---RYGG 460 (953)
Q Consensus 384 ~~~~~~~p~~~~~~~~~~~~~~wspDg~~i~~~~~~~~~~~~~~~~~~~~~l~~~d~~~~~g~~~~~l~~~~~---~~~~ 460 (953)
.. .+.+++..++||||+++++-. +....+-+||+ .+..-.+.+.-+.. .--+
T Consensus 231 ~~----------aHkGsIfalsWsPDs~~~~T~-------------SaDkt~KIWdV--s~~slv~t~~~~~~v~dqqvG 285 (603)
T KOG0318|consen 231 SD----------AHKGSIFALSWSPDSTQFLTV-------------SADKTIKIWDV--STNSLVSTWPMGSTVEDQQVG 285 (603)
T ss_pred CC----------CccccEEEEEECCCCceEEEe-------------cCCceEEEEEe--eccceEEEeecCCchhceEEE
Confidence 22 234677899999999998776 45556777776 23322233322211 1123
Q ss_pred eeeccCCceEEEEEecccCceEEEEEcCCCCCCCcEEeecCCCccccCCCCCCCeEeccCCCEEEEEeeeccCCCcEEEE
Q 002209 461 ISWCDDSLALVYESWYKTRRTRTWVISPGSKDVAPRILFDRSSEDVYSDPGSPMMRRTSTGTYVIAKIKKENDEGTYILL 540 (953)
Q Consensus 461 ~~~SpDg~~l~~~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~SpDG~~l~~~~~~~~~~~~~~~~ 540 (953)
..|- ...|+..+-.+ .|-.++++.+ .+..+...+...+.. +..+|||++|+....++
T Consensus 286 ~lWq--kd~lItVSl~G----~in~ln~~d~--~~~~~i~GHnK~ITa------Ltv~~d~~~i~SgsyDG--------- 342 (603)
T KOG0318|consen 286 CLWQ--KDHLITVSLSG----TINYLNPSDP--SVLKVISGHNKSITA------LTVSPDGKTIYSGSYDG--------- 342 (603)
T ss_pred EEEe--CCeEEEEEcCc----EEEEecccCC--ChhheecccccceeE------EEEcCCCCEEEeeccCc---------
Confidence 5665 22333332222 3445565554 233333333332222 78899999888776432
Q ss_pred ecCCCCCCCCCCeEEEEECCCCceEEEe
Q 002209 541 NGNGATPEGNIPFLDLFDINTGSKERIW 568 (953)
Q Consensus 541 ~~~~~~~~~~~~~L~~~d~~~~~~~~l~ 568 (953)
+|..||..+|..-++.
T Consensus 343 ------------~I~~W~~~~g~~~~~~ 358 (603)
T KOG0318|consen 343 ------------HINSWDSGSGTSDRLA 358 (603)
T ss_pred ------------eEEEEecCCccccccc
Confidence 5889999888777665
No 132
>PLN03084 alpha/beta hydrolase fold protein; Provisional
Probab=99.28 E-value=3.3e-10 Score=124.89 Aligned_cols=193 Identities=13% Similarity=0.157 Sum_probs=120.4
Q ss_pred ccEEEEeCCCCCcCcCCCCcccCCCCCCCCccchHHHHHHHcCcEEEEcCCCCCCCCCChhhhh------hhHHHHHHHH
Q 002209 670 LPCLFWSYPGEFKSKDAAGQVRGSPNEFPRIGSTSVLLWLARGFAILGGPTTPIIGEGDEEAND------RFVEQLVACA 743 (953)
Q Consensus 670 ~P~vv~~hGg~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~G~~V~~~~~~~~~G~G~~~~~~------~~~~~~~~D~ 743 (953)
.|.||++||.+... + .|. .....| +.+|.|++ .|..|+|.+..+. .......+|+
T Consensus 127 ~~~ivllHG~~~~~-------------~-~w~-~~~~~L-~~~~~Via---~DlpG~G~S~~p~~~~~~~ys~~~~a~~l 187 (383)
T PLN03084 127 NPPVLLIHGFPSQA-------------Y-SYR-KVLPVL-SKNYHAIA---FDWLGFGFSDKPQPGYGFNYTLDEYVSSL 187 (383)
T ss_pred CCeEEEECCCCCCH-------------H-HHH-HHHHHH-hcCCEEEE---ECCCCCCCCCCCcccccccCCHHHHHHHH
Confidence 47899999964211 0 111 122334 56899999 5556788775432 1345556666
Q ss_pred HHHHHHHHHcCCCCCCcEEEEEeChHHHHHHHHHHhCCCcccEEEEcccCCCCCC--CCcC------------ccc----
Q 002209 744 EAAVEEVVRRGVAHPSKIAVGGHSYGAFMTANLLAHAPHLFCCGIARSGAYNRTL--TPFG------------FQN---- 805 (953)
Q Consensus 744 ~~~~~~l~~~~~~d~~~i~l~G~S~GG~~a~~~a~~~p~~~~a~v~~~~~~d~~~--~~~~------------~~~---- 805 (953)
.+.++.+ ..+++.|+|||+||.+++.++.++|++++++|++++...... .+.. +..
T Consensus 188 ~~~i~~l------~~~~~~LvG~s~GG~ia~~~a~~~P~~v~~lILi~~~~~~~~~~~p~~l~~~~~~l~~~~~~~~~~~ 261 (383)
T PLN03084 188 ESLIDEL------KSDKVSLVVQGYFSPPVVKYASAHPDKIKKLILLNPPLTKEHAKLPSTLSEFSNFLLGEIFSQDPLR 261 (383)
T ss_pred HHHHHHh------CCCCceEEEECHHHHHHHHHHHhChHhhcEEEEECCCCccccccchHHHHHHHHHHhhhhhhcchHH
Confidence 6666554 235799999999999999999999999999999987642110 0000 000
Q ss_pred ----------------cc----chhh--------hhHHHHHhcC-cc-------c---ccCCCCCcEEEEEeCCCCCCCC
Q 002209 806 ----------------ED----RTLW--------EATSTYVEMS-PF-------M---SANKLKKPILLVHGEEDNNSGT 846 (953)
Q Consensus 806 ----------------~~----~~~~--------~~~~~~~~~s-p~-------~---~~~~i~~P~Li~~G~~D~~v~~ 846 (953)
+. ..++ .....+..+. .+ . ...+++.|+|+++|+.|..++
T Consensus 262 ~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~l~~~~r~~~~~l~~~~~~l~~~l~~~~i~vPvLiI~G~~D~~v~- 340 (383)
T PLN03084 262 ASDKALTSCGPYAMKEDDAMVYRRPYLTSGSSGFALNAISRSMKKELKKYIEEMRSILTDKNWKTPITVCWGLRDRWLN- 340 (383)
T ss_pred HHhhhhcccCccCCCHHHHHHHhccccCCcchHHHHHHHHHHhhcccchhhHHHHhhhccccCCCCEEEEeeCCCCCcC-
Confidence 00 0000 0000001110 00 0 013578999999999999988
Q ss_pred chHHHHHHHHHHHhCCCcEEEEEeCCCCccCCCcccHHHHHHHHHHHHH
Q 002209 847 LTMQSDRFFNALKGHGALCRLVILPFESHGYAARESIMHVLWETDRWLQ 895 (953)
Q Consensus 847 ~~~~~~~~~~~l~~~g~~~~~~~~~~~~H~~~~~~~~~~~~~~i~~fl~ 895 (953)
....+++.+.. +.+++++|+++|... .+..+.+.+.|.+||.
T Consensus 341 -~~~~~~~a~~~-----~a~l~vIp~aGH~~~-~E~Pe~v~~~I~~Fl~ 382 (383)
T PLN03084 341 -YDGVEDFCKSS-----QHKLIELPMAGHHVQ-EDCGEELGGIISGILS 382 (383)
T ss_pred -HHHHHHHHHhc-----CCeEEEECCCCCCcc-hhCHHHHHHHHHHHhh
Confidence 77666665542 358899999999764 5777888888888875
No 133
>KOG0973 consensus Histone transcription regulator HIRA, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning; Transcription]
Probab=99.28 E-value=2e-10 Score=132.11 Aligned_cols=147 Identities=19% Similarity=0.249 Sum_probs=91.5
Q ss_pred CcccceEeccCCCeEEEEEeeccccCCCCcceEEEEEC------CC--Cce--------e-ecccCCCccccccccceEE
Q 002209 189 AKLNFVTWSQDGKHLAFSIRIDAEDSSSSKLRVWVADV------DT--GKA--------R-PLFQSPDIYLNAIFDNFVW 251 (953)
Q Consensus 189 ~~~~~~~wSPDG~~laf~~~~~~~~~~~~~~~l~~~d~------~~--g~~--------~-~lt~~~~~~~~~~~~~~~w 251 (953)
..+..++|||||++||+.++ +....||-++. -+ |.. . .+..++. .+..+.|
T Consensus 70 ~sv~CVR~S~dG~~lAsGSD-------D~~v~iW~~~~~~~~~~fgs~g~~~~vE~wk~~~~l~~H~~-----DV~Dv~W 137 (942)
T KOG0973|consen 70 GSVNCVRFSPDGSYLASGSD-------DRLVMIWERAEIGSGTVFGSTGGAKNVESWKVVSILRGHDS-----DVLDVNW 137 (942)
T ss_pred CceeEEEECCCCCeEeeccC-------cceEEEeeecccCCcccccccccccccceeeEEEEEecCCC-----ccceecc
Confidence 36888999999999999542 22333454441 10 111 1 1112222 2678999
Q ss_pred ecCCeEEEEEecCCCCCCCCCCCCCCCCceeecCCCccccchhhhhhcCCcchhhhhhhhccceEEEEEc-CCce-eEeC
Q 002209 252 VNNSTLLVCTIPLLRGDPPKKPLVPLGPKMQSNEKRDIIQVRTFQDLLKDEYDEDLFDYYATTQLVLVSL-DGTV-KEIG 329 (953)
Q Consensus 252 spDg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~l~~~~~-~g~~-~~l~ 329 (953)
+||+.+|+... -...+.+++. +.+. +.+.
T Consensus 138 sp~~~~lvS~s-------------------------------------------------~DnsViiwn~~tF~~~~vl~ 168 (942)
T KOG0973|consen 138 SPDDSLLVSVS-------------------------------------------------LDNSVIIWNAKTFELLKVLR 168 (942)
T ss_pred CCCccEEEEec-------------------------------------------------ccceEEEEccccceeeeeee
Confidence 99999998651 1134556666 5543 3333
Q ss_pred CC-CcccccccCCCCcEEEEEEecCCccccccCCCCCcceEEEeccC-ceEEEeccCCCcccCCccccccccCccceeec
Q 002209 330 PP-AVYTSLDPSPDEKYILISSIHRPYSFIVPCGRFPRQVGVWTTDG-IFVRELCDLPLAEDIPIAFNSVRKGMRSINWR 407 (953)
Q Consensus 330 ~~-~~~~~~~~SpDG~~l~~~~~~~~~~~~~~~~~~~~~i~~~d~~g-~~~~~l~~~~~~~~~p~~~~~~~~~~~~~~ws 407 (953)
.. ..+-.+.|.|=||++|..+.++ .|.+|++.. +-.+.++. +..+ . ......+.+.||
T Consensus 169 ~H~s~VKGvs~DP~Gky~ASqsdDr-------------tikvwrt~dw~i~k~It~-pf~~-~-----~~~T~f~RlSWS 228 (942)
T KOG0973|consen 169 GHQSLVKGVSWDPIGKYFASQSDDR-------------TLKVWRTSDWGIEKSITK-PFEE-S-----PLTTFFLRLSWS 228 (942)
T ss_pred cccccccceEECCccCeeeeecCCc-------------eEEEEEcccceeeEeecc-chhh-C-----CCcceeeecccC
Confidence 33 7788899999999999998665 899998764 34444443 2211 1 112334679999
Q ss_pred cCCCCceEE
Q 002209 408 SDKPSTLYW 416 (953)
Q Consensus 408 pDg~~i~~~ 416 (953)
|||+.|+-.
T Consensus 229 PDG~~las~ 237 (942)
T KOG0973|consen 229 PDGHHLASP 237 (942)
T ss_pred CCcCeecch
Confidence 999987754
No 134
>KOG0286 consensus G-protein beta subunit [General function prediction only]
Probab=99.28 E-value=6.7e-10 Score=109.28 Aligned_cols=270 Identities=15% Similarity=0.139 Sum_probs=177.2
Q ss_pred CCCCceecCCCCEEEEEecCCCCCcccccc-------ccceec--eEEecCCCCCCcceeeeeceEEEEccCC---CCCC
Q 002209 110 PLPALSFSPQRDKILFLKRRALPPLEELAR-------PEEKLA--GLRIDGKCNTRSRMSFYTGIGIHQLFPD---GKLG 177 (953)
Q Consensus 110 ~~~~~~~SPDG~~la~~~~~~~~~~~~~~~-------~~~~~~--~~~~~~~~~~~~~~~~~~~i~i~~~~~~---g~~~ 177 (953)
-+....||+|+++|+..+.++...+++.-. |.-..+ .-.++|.++-....+.++.--|++++.. |...
T Consensus 57 Ki~~~~ws~Dsr~ivSaSqDGklIvWDs~TtnK~haipl~s~WVMtCA~sPSg~~VAcGGLdN~Csiy~ls~~d~~g~~~ 136 (343)
T KOG0286|consen 57 KIYAMDWSTDSRRIVSASQDGKLIVWDSFTTNKVHAIPLPSSWVMTCAYSPSGNFVACGGLDNKCSIYPLSTRDAEGNVR 136 (343)
T ss_pred ceeeeEecCCcCeEEeeccCCeEEEEEcccccceeEEecCceeEEEEEECCCCCeEEecCcCceeEEEecccccccccce
Confidence 466778888888888888774433332221 111112 2446777766665666666778888632 2223
Q ss_pred ceeeeecCCCCCcccceEeccCCCeEEEEEeeccccCCCCcceEEEEECCCCceeecccCCCccccccccceEEec-CCe
Q 002209 178 QEIEIQGFPDGAKLNFVTWSQDGKHLAFSIRIDAEDSSSSKLRVWVADVDTGKARPLFQSPDIYLNAIFDNFVWVN-NST 256 (953)
Q Consensus 178 ~~~~l~~~~~~~~~~~~~wSPDG~~laf~~~~~~~~~~~~~~~l~~~d~~~g~~~~lt~~~~~~~~~~~~~~~wsp-Dg~ 256 (953)
..+.|.+++ ...+.-.|-+|+ +|+. +.|....-+||+++|+..+.+...... +-++..+| |++
T Consensus 137 v~r~l~gHt--gylScC~f~dD~-~ilT---------~SGD~TCalWDie~g~~~~~f~GH~gD----V~slsl~p~~~n 200 (343)
T KOG0286|consen 137 VSRELAGHT--GYLSCCRFLDDN-HILT---------GSGDMTCALWDIETGQQTQVFHGHTGD----VMSLSLSPSDGN 200 (343)
T ss_pred eeeeecCcc--ceeEEEEEcCCC-ceEe---------cCCCceEEEEEcccceEEEEecCCccc----EEEEecCCCCCC
Confidence 345565544 467777887655 6766 335677778888998877766544433 66888888 888
Q ss_pred EEEEEecCCCCCCCCCCCCCCCCceeecCCCccccchhhhhhcCCcchhhhhhhhccceEEEEEc-CCc-eeEeCCC-Cc
Q 002209 257 LLVCTIPLLRGDPPKKPLVPLGPKMQSNEKRDIIQVRTFQDLLKDEYDEDLFDYYATTQLVLVSL-DGT-VKEIGPP-AV 333 (953)
Q Consensus 257 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~l~~~~~-~g~-~~~l~~~-~~ 333 (953)
.++.... | . .-.++|+ .|. .+.+... ..
T Consensus 201 tFvSg~c----------------------------------------D-------~--~aklWD~R~~~c~qtF~ghesD 231 (343)
T KOG0286|consen 201 TFVSGGC----------------------------------------D-------K--SAKLWDVRSGQCVQTFEGHESD 231 (343)
T ss_pred eEEeccc----------------------------------------c-------c--ceeeeeccCcceeEeecccccc
Confidence 7774411 1 1 2234566 554 4444444 88
Q ss_pred ccccccCCCCcEEEEEEecCCccccccCCCCCcceEEEeccCceEEEeccCCCcccCCccccccccCccceeeccCCCCc
Q 002209 334 YTSLDPSPDEKYILISSIHRPYSFIVPCGRFPRQVGVWTTDGIFVRELCDLPLAEDIPIAFNSVRKGMRSINWRSDKPST 413 (953)
Q Consensus 334 ~~~~~~SpDG~~l~~~~~~~~~~~~~~~~~~~~~i~~~d~~g~~~~~l~~~~~~~~~p~~~~~~~~~~~~~~wspDg~~i 413 (953)
+..+.|-|+|..++..+.+. ...++|+.....-.+...+. ...++.+++||..|+.
T Consensus 232 INsv~ffP~G~afatGSDD~-------------tcRlyDlRaD~~~a~ys~~~----------~~~gitSv~FS~SGRl- 287 (343)
T KOG0286|consen 232 INSVRFFPSGDAFATGSDDA-------------TCRLYDLRADQELAVYSHDS----------IICGITSVAFSKSGRL- 287 (343)
T ss_pred cceEEEccCCCeeeecCCCc-------------eeEEEeecCCcEEeeeccCc----------ccCCceeEEEcccccE-
Confidence 89999999998887776443 78889997544433333221 2256688999999984
Q ss_pred eEEEEeccCCCcccccccCCeEEEEecCCCCCCCceEEeecccccCCeeeccCCceEEEEEecccCceEEE
Q 002209 414 LYWAETQDGGDAKVEVTPRDIIYTQQAEPVQGEGPEILHKLDLRYGGISWCDDSLALVYESWYKTRRTRTW 484 (953)
Q Consensus 414 ~~~~~~~~~~~~~~~~~~~~~l~~~d~~~~~g~~~~~l~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~l~ 484 (953)
+|.- .....+.+||. ..+...-.|..++.++..+..||||..+...+|+... +||
T Consensus 288 Lfag------------y~d~~c~vWDt--lk~e~vg~L~GHeNRvScl~~s~DG~av~TgSWDs~l--riW 342 (343)
T KOG0286|consen 288 LFAG------------YDDFTCNVWDT--LKGERVGVLAGHENRVSCLGVSPDGMAVATGSWDSTL--RIW 342 (343)
T ss_pred EEee------------ecCCceeEeec--cccceEEEeeccCCeeEEEEECCCCcEEEecchhHhe--eec
Confidence 4430 12346788985 6666667788999999999999999999999888643 666
No 135
>PRK08775 homoserine O-acetyltransferase; Provisional
Probab=99.27 E-value=5.4e-11 Score=131.42 Aligned_cols=175 Identities=13% Similarity=0.052 Sum_probs=110.7
Q ss_pred HHHcCcEEEEcCCCCCCCCCChhhhhhhHHHHHHHHHHHHHHHHHcCCCCCCc-EEEEEeChHHHHHHHHHHhCCCcccE
Q 002209 708 WLARGFAILGGPTTPIIGEGDEEANDRFVEQLVACAEAAVEEVVRRGVAHPSK-IAVGGHSYGAFMTANLLAHAPHLFCC 786 (953)
Q Consensus 708 la~~G~~V~~~~~~~~~G~G~~~~~~~~~~~~~~D~~~~~~~l~~~~~~d~~~-i~l~G~S~GG~~a~~~a~~~p~~~~a 786 (953)
|...+|.|+++|.+ |+|.+...........+|+.+.++.+ +-++ +.++||||||++++.++.++|+++++
T Consensus 95 L~~~~~~Vi~~Dl~---G~g~s~~~~~~~~~~a~dl~~ll~~l------~l~~~~~lvG~SmGG~vA~~~A~~~P~~V~~ 165 (343)
T PRK08775 95 LDPARFRLLAFDFI---GADGSLDVPIDTADQADAIALLLDAL------GIARLHAFVGYSYGALVGLQFASRHPARVRT 165 (343)
T ss_pred cCccccEEEEEeCC---CCCCCCCCCCCHHHHHHHHHHHHHHc------CCCcceEEEEECHHHHHHHHHHHHChHhhhe
Confidence 43568999996654 66655322222345566666655554 2234 57999999999999999999999999
Q ss_pred EEEcccCCCCCCCC--c--------------C----------------ccc--------ccchh------hhhHH-----
Q 002209 787 GIARSGAYNRTLTP--F--------------G----------------FQN--------EDRTL------WEATS----- 815 (953)
Q Consensus 787 ~v~~~~~~d~~~~~--~--------------~----------------~~~--------~~~~~------~~~~~----- 815 (953)
+|++++........ + . +.. ..... .....
T Consensus 166 LvLi~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 245 (343)
T PRK08775 166 LVVVSGAHRAHPYAAAWRALQRRAVALGQLQCAEKHGLALARQLAMLSYRTPEEFEERFDAPPEVINGRVRVAAEDYLDA 245 (343)
T ss_pred EEEECccccCCHHHHHHHHHHHHHHHcCCCCCCchhHHHHHHHHHHHHcCCHHHHHHHhCCCccccCCCccchHHHHHHH
Confidence 99998643210000 0 0 000 00000 00000
Q ss_pred ----HHHhcCc-------------ccccCCCCCcEEEEEeCCCCCCCCchHHHHHHHHHHHhCCCcEEEEEeCC-CCccC
Q 002209 816 ----TYVEMSP-------------FMSANKLKKPILLVHGEEDNNSGTLTMQSDRFFNALKGHGALCRLVILPF-ESHGY 877 (953)
Q Consensus 816 ----~~~~~sp-------------~~~~~~i~~P~Li~~G~~D~~v~~~~~~~~~~~~~l~~~g~~~~~~~~~~-~~H~~ 877 (953)
.....++ ...+.++++|+|+++|++|..+| +..+.++.+.+.. ..+++++++ +||..
T Consensus 246 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~I~~PtLvi~G~~D~~~p--~~~~~~~~~~i~p---~a~l~~i~~~aGH~~ 320 (343)
T PRK08775 246 AGAQYVARTPVNAYLRLSESIDLHRVDPEAIRVPTVVVAVEGDRLVP--LADLVELAEGLGP---RGSLRVLRSPYGHDA 320 (343)
T ss_pred HHHHHHHhcChhHHHHHHHHHhhcCCChhcCCCCeEEEEeCCCEeeC--HHHHHHHHHHcCC---CCeEEEEeCCccHHH
Confidence 0000000 11246789999999999999998 8888888776632 258889985 89986
Q ss_pred CCcccHHHHHHHHHHHHHHh
Q 002209 878 AARESIMHVLWETDRWLQKY 897 (953)
Q Consensus 878 ~~~~~~~~~~~~i~~fl~~~ 897 (953)
. .+..+.+.+.+.+||.+.
T Consensus 321 ~-lE~Pe~~~~~l~~FL~~~ 339 (343)
T PRK08775 321 F-LKETDRIDAILTTALRST 339 (343)
T ss_pred H-hcCHHHHHHHHHHHHHhc
Confidence 4 567888889999998753
No 136
>PRK11028 6-phosphogluconolactonase; Provisional
Probab=99.27 E-value=8.8e-09 Score=113.42 Aligned_cols=263 Identities=14% Similarity=0.113 Sum_probs=137.1
Q ss_pred ceEEEEccCCCCCCceeeeecCCCCCcccceEeccCCCeEEEEEeeccccCCCCcceEEEEECC-CCceeecccCCCccc
Q 002209 164 GIGIHQLFPDGKLGQEIEIQGFPDGAKLNFVTWSQDGKHLAFSIRIDAEDSSSSKLRVWVADVD-TGKARPLFQSPDIYL 242 (953)
Q Consensus 164 ~i~i~~~~~~g~~~~~~~l~~~~~~~~~~~~~wSPDG~~laf~~~~~~~~~~~~~~~l~~~d~~-~g~~~~lt~~~~~~~ 242 (953)
.|.+|++.++|.. +.+..++.+.......+||||++|+.... . ...|..++++ .|+...+...+...
T Consensus 13 ~I~~~~~~~~g~l---~~~~~~~~~~~~~~l~~spd~~~lyv~~~------~--~~~i~~~~~~~~g~l~~~~~~~~~~- 80 (330)
T PRK11028 13 QIHVWNLNHEGAL---TLLQVVDVPGQVQPMVISPDKRHLYVGVR------P--EFRVLSYRIADDGALTFAAESPLPG- 80 (330)
T ss_pred CEEEEEECCCCce---eeeeEEecCCCCccEEECCCCCEEEEEEC------C--CCcEEEEEECCCCceEEeeeecCCC-
Confidence 6789998543432 22222333345677899999998866432 1 3455445544 44433222111110
Q ss_pred cccccceEEecCCeEEEEEecCCCCCCCCCCCCCCCCceeecCCCccccchhhhhhcCCcchhhhhhhhccceEEEEEc-
Q 002209 243 NAIFDNFVWVNNSTLLVCTIPLLRGDPPKKPLVPLGPKMQSNEKRDIIQVRTFQDLLKDEYDEDLFDYYATTQLVLVSL- 321 (953)
Q Consensus 243 ~~~~~~~~wspDg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~l~~~~~- 321 (953)
....++++|||+.|+.+.. ..+.|..+++
T Consensus 81 --~p~~i~~~~~g~~l~v~~~------------------------------------------------~~~~v~v~~~~ 110 (330)
T PRK11028 81 --SPTHISTDHQGRFLFSASY------------------------------------------------NANCVSVSPLD 110 (330)
T ss_pred --CceEEEECCCCCEEEEEEc------------------------------------------------CCCeEEEEEEC
Confidence 1347889999999987610 1234555555
Q ss_pred -CCcee-Ee--CCC-CcccccccCCCCcEEEEEEecCCccccccCCCCCcceEEEeccC-ceEEEeccCCCcccCCcccc
Q 002209 322 -DGTVK-EI--GPP-AVYTSLDPSPDEKYILISSIHRPYSFIVPCGRFPRQVGVWTTDG-IFVRELCDLPLAEDIPIAFN 395 (953)
Q Consensus 322 -~g~~~-~l--~~~-~~~~~~~~SpDG~~l~~~~~~~~~~~~~~~~~~~~~i~~~d~~g-~~~~~l~~~~~~~~~p~~~~ 395 (953)
+|... .+ ... ......+++|||++|++.... ...|.+||++. +.......... ..+
T Consensus 111 ~~g~~~~~~~~~~~~~~~~~~~~~p~g~~l~v~~~~------------~~~v~v~d~~~~g~l~~~~~~~~--~~~---- 172 (330)
T PRK11028 111 KDGIPVAPIQIIEGLEGCHSANIDPDNRTLWVPCLK------------EDRIRLFTLSDDGHLVAQEPAEV--TTV---- 172 (330)
T ss_pred CCCCCCCceeeccCCCcccEeEeCCCCCEEEEeeCC------------CCEEEEEEECCCCcccccCCCce--ecC----
Confidence 34221 11 111 334567899999998776632 24799999974 32221100000 000
Q ss_pred ccccCccceeeccCCCCceEEEEeccCCCcccccccCCeEEEEecCCCCCCCceEEee---ccc------ccCCeeeccC
Q 002209 396 SVRKGMRSINWRSDKPSTLYWAETQDGGDAKVEVTPRDIIYTQQAEPVQGEGPEILHK---LDL------RYGGISWCDD 466 (953)
Q Consensus 396 ~~~~~~~~~~wspDg~~i~~~~~~~~~~~~~~~~~~~~~l~~~d~~~~~g~~~~~l~~---~~~------~~~~~~~SpD 466 (953)
...+++.++|+|||+.++.. +. ..+.|.++++++ .+++.+.+.. ... ....+.++||
T Consensus 173 -~g~~p~~~~~~pdg~~lyv~-~~-----------~~~~v~v~~~~~-~~~~~~~~~~~~~~p~~~~~~~~~~~i~~~pd 238 (330)
T PRK11028 173 -EGAGPRHMVFHPNQQYAYCV-NE-----------LNSSVDVWQLKD-PHGEIECVQTLDMMPADFSDTRWAADIHITPD 238 (330)
T ss_pred -CCCCCceEEECCCCCEEEEE-ec-----------CCCEEEEEEEeC-CCCCEEEEEEEecCCCcCCCCccceeEEECCC
Confidence 01345789999999865544 21 245777777611 1233322211 111 1123779999
Q ss_pred CceEEEEEecccCceEEEEEcCCCCCCCcEEeecCCCccccCCCCCCCeEeccCCCEEEEEe
Q 002209 467 SLALVYESWYKTRRTRTWVISPGSKDVAPRILFDRSSEDVYSDPGSPMMRRTSTGTYVIAKI 528 (953)
Q Consensus 467 g~~l~~~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~SpDG~~l~~~~ 528 (953)
|++|+.+ ++......+|.++.+++ ..+.+-...... .+ ..+.++|||++|+...
T Consensus 239 g~~lyv~-~~~~~~I~v~~i~~~~~--~~~~~~~~~~~~---~p--~~~~~~~dg~~l~va~ 292 (330)
T PRK11028 239 GRHLYAC-DRTASLISVFSVSEDGS--VLSFEGHQPTET---QP--RGFNIDHSGKYLIAAG 292 (330)
T ss_pred CCEEEEe-cCCCCeEEEEEEeCCCC--eEEEeEEEeccc---cC--CceEECCCCCEEEEEE
Confidence 9988776 33333234555554442 212221111110 01 1178999999998765
No 137
>KOG4667 consensus Predicted esterase [Lipid transport and metabolism]
Probab=99.26 E-value=1.1e-10 Score=110.24 Aligned_cols=210 Identities=15% Similarity=0.097 Sum_probs=136.2
Q ss_pred ceEEEEEEcCCCcEEEEEEEcCCCCCCCCCCCccEEEEeCCCCCcCcCCCCcccCCCCCCCCccchHHHHHHHcCcEEEE
Q 002209 638 QKELIKYQRKDGVQLSATLYLPPGYDPSKDGPLPCLFWSYPGEFKSKDAAGQVRGSPNEFPRIGSTSVLLWLARGFAILG 717 (953)
Q Consensus 638 ~~~~~~~~~~dg~~~~~~l~~P~~~~~~~~~~~P~vv~~hGg~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~G~~V~~ 717 (953)
....+.++...+..+-+.+..- + ..-++|++||.- + . ....+....+..+++.||.++.
T Consensus 9 ~~~~ivi~n~~ne~lvg~lh~t-----g---s~e~vvlcHGfr--S-------~----Kn~~~~~~vA~~~e~~gis~fR 67 (269)
T KOG4667|consen 9 IAQKIVIPNSRNEKLVGLLHET-----G---STEIVVLCHGFR--S-------H----KNAIIMKNVAKALEKEGISAFR 67 (269)
T ss_pred eeeEEEeccCCCchhhcceecc-----C---CceEEEEeeccc--c-------c----cchHHHHHHHHHHHhcCceEEE
Confidence 3456677777777766644432 1 256899999931 0 0 1111122445567789999999
Q ss_pred cCCCCCCCCCChhhhhhh--HHHHHHHHHHHHHHHHHcCCCCCCcEEEEEeChHHHHHHHHHHhCCCcccEEEEcccCCC
Q 002209 718 GPTTPIIGEGDEEANDRF--VEQLVACAEAAVEEVVRRGVAHPSKIAVGGHSYGAFMTANLLAHAPHLFCCGIARSGAYN 795 (953)
Q Consensus 718 ~~~~~~~G~G~~~~~~~~--~~~~~~D~~~~~~~l~~~~~~d~~~i~l~G~S~GG~~a~~~a~~~p~~~~a~v~~~~~~d 795 (953)
+|+.|.|++.+.-.+ +..+.+|+..+++++..... .--.|+|||-||.+++..+.++++ ++-+|..+|-++
T Consensus 68 ---fDF~GnGeS~gsf~~Gn~~~eadDL~sV~q~~s~~nr---~v~vi~gHSkGg~Vvl~ya~K~~d-~~~viNcsGRyd 140 (269)
T KOG4667|consen 68 ---FDFSGNGESEGSFYYGNYNTEADDLHSVIQYFSNSNR---VVPVILGHSKGGDVVLLYASKYHD-IRNVINCSGRYD 140 (269)
T ss_pred ---EEecCCCCcCCccccCcccchHHHHHHHHHHhccCce---EEEEEEeecCccHHHHHHHHhhcC-chheEEcccccc
Confidence 788898888664322 35667999999999866321 123699999999999999999966 778888888766
Q ss_pred CCC------CC--------cCccc------ccchhhhhHHHHHhc----CcccccCCCCCcEEEEEeCCCCCCCCchHHH
Q 002209 796 RTL------TP--------FGFQN------EDRTLWEATSTYVEM----SPFMSANKLKKPILLVHGEEDNNSGTLTMQS 851 (953)
Q Consensus 796 ~~~------~~--------~~~~~------~~~~~~~~~~~~~~~----sp~~~~~~i~~P~Li~~G~~D~~v~~~~~~~ 851 (953)
..- .+ -+|.+ .....|......... ++.-.-=..++|+|-+||..|.+|| .+++
T Consensus 141 l~~~I~eRlg~~~l~~ike~Gfid~~~rkG~y~~rvt~eSlmdrLntd~h~aclkId~~C~VLTvhGs~D~IVP--ve~A 218 (269)
T KOG4667|consen 141 LKNGINERLGEDYLERIKEQGFIDVGPRKGKYGYRVTEESLMDRLNTDIHEACLKIDKQCRVLTVHGSEDEIVP--VEDA 218 (269)
T ss_pred hhcchhhhhcccHHHHHHhCCceecCcccCCcCceecHHHHHHHHhchhhhhhcCcCccCceEEEeccCCceee--chhH
Confidence 321 00 11111 011122211111111 1111111246899999999999999 9999
Q ss_pred HHHHHHHHhCCCcEEEEEeCCCCccCCCcc
Q 002209 852 DRFFNALKGHGALCRLVILPFESHGYAARE 881 (953)
Q Consensus 852 ~~~~~~l~~~g~~~~~~~~~~~~H~~~~~~ 881 (953)
.++.+.++. .++.++||++|.++..+
T Consensus 219 kefAk~i~n----H~L~iIEgADHnyt~~q 244 (269)
T KOG4667|consen 219 KEFAKIIPN----HKLEIIEGADHNYTGHQ 244 (269)
T ss_pred HHHHHhccC----CceEEecCCCcCccchh
Confidence 999888876 48899999999997544
No 138
>PF12697 Abhydrolase_6: Alpha/beta hydrolase family; PDB: 3LLC_A 3A2N_E 3A2M_A 3A2L_A 3AFI_F 3C5V_A 3C5W_P 3E0X_A 2ZJF_A 3QYJ_A ....
Probab=99.26 E-value=8.5e-12 Score=128.99 Aligned_cols=158 Identities=20% Similarity=0.272 Sum_probs=103.2
Q ss_pred HHHHHHHcCcEEEEcCCCCCCCCCChhhhh----hhHHHHHHHHHHHHHHHHHcCCCCCCcEEEEEeChHHHHHHHHHHh
Q 002209 704 SVLLWLARGFAILGGPTTPIIGEGDEEAND----RFVEQLVACAEAAVEEVVRRGVAHPSKIAVGGHSYGAFMTANLLAH 779 (953)
Q Consensus 704 ~~~~la~~G~~V~~~~~~~~~G~G~~~~~~----~~~~~~~~D~~~~~~~l~~~~~~d~~~i~l~G~S~GG~~a~~~a~~ 779 (953)
....| ++||.|+++ +.+|+|.+.... ......+.|+.++++.+. .+++.++|||+||.+++.++.+
T Consensus 17 ~~~~l-~~~~~v~~~---d~~G~G~s~~~~~~~~~~~~~~~~~l~~~l~~~~------~~~~~lvG~S~Gg~~a~~~a~~ 86 (228)
T PF12697_consen 17 LAEAL-ARGYRVIAF---DLPGHGRSDPPPDYSPYSIEDYAEDLAELLDALG------IKKVILVGHSMGGMIALRLAAR 86 (228)
T ss_dssp HHHHH-HTTSEEEEE---ECTTSTTSSSHSSGSGGSHHHHHHHHHHHHHHTT------TSSEEEEEETHHHHHHHHHHHH
T ss_pred HHHHH-hCCCEEEEE---ecCCccccccccccCCcchhhhhhhhhhcccccc------cccccccccccccccccccccc
Confidence 44455 589999994 456777775432 224555666666554432 2689999999999999999999
Q ss_pred CCCcccEEEEcccCCCCCCCC--c----Cccc-------ccc----hh---h------h----h-HHH--------HHhc
Q 002209 780 APHLFCCGIARSGAYNRTLTP--F----GFQN-------EDR----TL---W------E----A-TST--------YVEM 820 (953)
Q Consensus 780 ~p~~~~a~v~~~~~~d~~~~~--~----~~~~-------~~~----~~---~------~----~-~~~--------~~~~ 820 (953)
+|++++++|++++........ . .... ... .. + . . ... +...
T Consensus 87 ~p~~v~~~vl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 166 (228)
T PF12697_consen 87 YPDRVKGLVLLSPPPPLPDSPSRSFGPSFIRRLLAWRSRSLRRLASRFFYRWFDGDEPEDLIRSSRRALAEYLRSNLWQA 166 (228)
T ss_dssp SGGGEEEEEEESESSSHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cccccccceeecccccccccccccccchhhhhhhhccccccccccccccccccccccccccccccccccccccccccccc
Confidence 999999999999876421100 0 0000 000 00 0 0 0 000 0112
Q ss_pred CcccccCCCCCcEEEEEeCCCCCCCCchHHHHHHHHHHHhCCCcEEEEEeCCCCccC
Q 002209 821 SPFMSANKLKKPILLVHGEEDNNSGTLTMQSDRFFNALKGHGALCRLVILPFESHGY 877 (953)
Q Consensus 821 sp~~~~~~i~~P~Li~~G~~D~~v~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~H~~ 877 (953)
.....+.++++|+++++|++|..++ .....++.+.+. .++++++|++||..
T Consensus 167 ~~~~~~~~~~~pvl~i~g~~D~~~~--~~~~~~~~~~~~----~~~~~~~~~~gH~~ 217 (228)
T PF12697_consen 167 DLSEALPRIKVPVLVIHGEDDPIVP--PESAEELADKLP----NAELVVIPGAGHFL 217 (228)
T ss_dssp HHHHHHHGSSSEEEEEEETTSSSSH--HHHHHHHHHHST----TEEEEEETTSSSTH
T ss_pred cccccccccCCCeEEeecCCCCCCC--HHHHHHHHHHCC----CCEEEEECCCCCcc
Confidence 2334567789999999999999987 666666665543 47999999999986
No 139
>KOG2096 consensus WD40 repeat protein [General function prediction only]
Probab=99.26 E-value=5.7e-10 Score=110.80 Aligned_cols=283 Identities=14% Similarity=0.150 Sum_probs=155.8
Q ss_pred CCCCCceecCCCCEEEEEecCCCCCccccccccceeceEEecCCCCCCcceeeeeceEEEEccCCCCCCceeeee-cCCC
Q 002209 109 PPLPALSFSPQRDKILFLKRRALPPLEELARPEEKLAGLRIDGKCNTRSRMSFYTGIGIHQLFPDGKLGQEIEIQ-GFPD 187 (953)
Q Consensus 109 ~~~~~~~~SPDG~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~i~~~~~~g~~~~~~~l~-~~~~ 187 (953)
.++..+.||.|||+||..+.+ ..|.||++.+ =.....+.+. +++-
T Consensus 87 ~~vt~~~FsSdGK~lat~~~D---------------------------------r~Ir~w~~~D-F~~~eHr~~R~nve~ 132 (420)
T KOG2096|consen 87 KEVTDVAFSSDGKKLATISGD---------------------------------RSIRLWDVRD-FENKEHRCIRQNVEY 132 (420)
T ss_pred CceeeeEEcCCCceeEEEeCC---------------------------------ceEEEEecch-hhhhhhhHhhccccC
Confidence 368899999999999999876 2578998842 2222222222 1221
Q ss_pred CCcccceEeccCCCeEEEEEeeccccCCCCcceEEEEECCC----CceeecccCCCc----cccccccceEEecCCeEEE
Q 002209 188 GAKLNFVTWSQDGKHLAFSIRIDAEDSSSSKLRVWVADVDT----GKARPLFQSPDI----YLNAIFDNFVWVNNSTLLV 259 (953)
Q Consensus 188 ~~~~~~~~wSPDG~~laf~~~~~~~~~~~~~~~l~~~d~~~----g~~~~lt~~~~~----~~~~~~~~~~wspDg~~l~ 259 (953)
+ ....++|+||-+.+++...+ ...|+++-+.. +-.-..+..... .....+.++.....++.|.
T Consensus 133 d-hpT~V~FapDc~s~vv~~~~--------g~~l~vyk~~K~~dG~~~~~~v~~D~~~f~~kh~v~~i~iGiA~~~k~im 203 (420)
T KOG2096|consen 133 D-HPTRVVFAPDCKSVVVSVKR--------GNKLCVYKLVKKTDGSGSHHFVHIDNLEFERKHQVDIINIGIAGNAKYIM 203 (420)
T ss_pred C-CceEEEECCCcceEEEEEcc--------CCEEEEEEeeecccCCCCcccccccccccchhcccceEEEeecCCceEEE
Confidence 2 56778999999999987642 34555554322 111111111100 0011122333444455555
Q ss_pred EEecCCCCCCCCCCCCCCCCceeecCCCccccchhhhhhcCCcchhhhhhhhccceEEEEEcCC-ceeEeCCC-Cccccc
Q 002209 260 CTIPLLRGDPPKKPLVPLGPKMQSNEKRDIIQVRTFQDLLKDEYDEDLFDYYATTQLVLVSLDG-TVKEIGPP-AVYTSL 337 (953)
Q Consensus 260 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~l~~~~~~g-~~~~l~~~-~~~~~~ 337 (953)
..+ ....|.++++.| -...+..+ ......
T Consensus 204 sas-------------------------------------------------~dt~i~lw~lkGq~L~~idtnq~~n~~a 234 (420)
T KOG2096|consen 204 SAS-------------------------------------------------LDTKICLWDLKGQLLQSIDTNQSSNYDA 234 (420)
T ss_pred Eec-------------------------------------------------CCCcEEEEecCCceeeeeccccccccce
Confidence 331 224566777744 34444444 455678
Q ss_pred ccCCCCcEEEEEEecCCccccccCCCCCcceEEEecc---CceEEEeccCCCcccCCccccccccCccceeeccCCCCce
Q 002209 338 DPSPDEKYILISSIHRPYSFIVPCGRFPRQVGVWTTD---GIFVRELCDLPLAEDIPIAFNSVRKGMRSINWRSDKPSTL 414 (953)
Q Consensus 338 ~~SpDG~~l~~~~~~~~~~~~~~~~~~~~~i~~~d~~---g~~~~~l~~~~~~~~~p~~~~~~~~~~~~~~wspDg~~i~ 414 (953)
+.||||++|+... |+.++.+|.+- .+..+.+.. .+...+...++..++||+|+++++
T Consensus 235 avSP~GRFia~~g-------------FTpDVkVwE~~f~kdG~fqev~r-------vf~LkGH~saV~~~aFsn~S~r~v 294 (420)
T KOG2096|consen 235 AVSPDGRFIAVSG-------------FTPDVKVWEPIFTKDGTFQEVKR-------VFSLKGHQSAVLAAAFSNSSTRAV 294 (420)
T ss_pred eeCCCCcEEEEec-------------CCCCceEEEEEeccCcchhhhhh-------hheeccchhheeeeeeCCCcceeE
Confidence 9999999999886 45588888763 222222211 011123445667889999999877
Q ss_pred EEEEeccCCCcccccccCCeEEEEecC--CCCCCCceEEe-------ecccccCCeeeccCCceEEEEEecccCceEEEE
Q 002209 415 YWAETQDGGDAKVEVTPRDIIYTQQAE--PVQGEGPEILH-------KLDLRYGGISWCDDSLALVYESWYKTRRTRTWV 485 (953)
Q Consensus 415 ~~~~~~~~~~~~~~~~~~~~l~~~d~~--~~~g~~~~~l~-------~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~l~~ 485 (953)
-. +..+.+.+||.+ =..+..+..|- ......-.++.||.|+.|+.+.. +.|-+
T Consensus 295 tv-------------SkDG~wriwdtdVrY~~~qDpk~Lk~g~~pl~aag~~p~RL~lsP~g~~lA~s~g-----s~l~~ 356 (420)
T KOG2096|consen 295 TV-------------SKDGKWRIWDTDVRYEAGQDPKILKEGSAPLHAAGSEPVRLELSPSGDSLAVSFG-----SDLKV 356 (420)
T ss_pred EE-------------ecCCcEEEeeccceEecCCCchHhhcCCcchhhcCCCceEEEeCCCCcEEEeecC-----CceEE
Confidence 66 334445555531 00122233221 11122235789999999887642 24666
Q ss_pred EcCCCCCCCcEEeecCCCccccCCCCCCCeEeccCCCEEEEEe
Q 002209 486 ISPGSKDVAPRILFDRSSEDVYSDPGSPMMRRTSTGTYVIAKI 528 (953)
Q Consensus 486 ~d~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~SpDG~~l~~~~ 528 (953)
+....+... ..+.+.....+.+ ++|++||++++...
T Consensus 357 ~~se~g~~~-~~~e~~h~~~Is~------is~~~~g~~~atcG 392 (420)
T KOG2096|consen 357 FASEDGKDY-PELEDIHSTTISS------ISYSSDGKYIATCG 392 (420)
T ss_pred EEcccCccc-hhHHHhhcCceee------EEecCCCcEEeeec
Confidence 665554211 1122222333333 89999999998765
No 140
>TIGR01392 homoserO_Ac_trn homoserine O-acetyltransferase. This family describes homoserine-O-acetyltransferase, an enzyme of methionine biosynthesis. This model has been rebuilt to identify sequences more broadly, including a number of sequences suggested to be homoserine O-acetyltransferase based on proximity to other Met biosynthesis genes.
Probab=99.24 E-value=2.4e-10 Score=126.63 Aligned_cols=67 Identities=19% Similarity=0.077 Sum_probs=52.8
Q ss_pred ccCCCCCcEEEEEeCCCCCCCCchHHHHHHHHHHHhCCCcEEEEE-eCCCCccCCCcccHHHHHHHHHHHH
Q 002209 825 SANKLKKPILLVHGEEDNNSGTLTMQSDRFFNALKGHGALCRLVI-LPFESHGYAARESIMHVLWETDRWL 894 (953)
Q Consensus 825 ~~~~i~~P~Li~~G~~D~~v~~~~~~~~~~~~~l~~~g~~~~~~~-~~~~~H~~~~~~~~~~~~~~i~~fl 894 (953)
.+.+|++|+|+++|++|..+| +..++++.+.+......++++. ++++||... .+..+.+.+.+.+||
T Consensus 283 ~l~~I~~P~Lvi~G~~D~~~p--~~~~~~~a~~i~~~~~~v~~~~i~~~~GH~~~-le~p~~~~~~l~~FL 350 (351)
T TIGR01392 283 ALSRIKAPFLVVSITSDWLFP--PAESRELAKALPAAGLRVTYVEIESPYGHDAF-LVETDQVEELIRGFL 350 (351)
T ss_pred HHhhCCCCEEEEEeCCccccC--HHHHHHHHHHHhhcCCceEEEEeCCCCCcchh-hcCHHHHHHHHHHHh
Confidence 456789999999999999998 9999999999887644444444 468999764 566778888888886
No 141
>PRK00175 metX homoserine O-acetyltransferase; Provisional
Probab=99.24 E-value=4.2e-10 Score=125.68 Aligned_cols=70 Identities=16% Similarity=0.025 Sum_probs=59.0
Q ss_pred ccCCCCCcEEEEEeCCCCCCCCchHHHHHHHHHHHhCCCcEEEEEeC-CCCccCCCcccHHHHHHHHHHHHHHh
Q 002209 825 SANKLKKPILLVHGEEDNNSGTLTMQSDRFFNALKGHGALCRLVILP-FESHGYAARESIMHVLWETDRWLQKY 897 (953)
Q Consensus 825 ~~~~i~~P~Li~~G~~D~~v~~~~~~~~~~~~~l~~~g~~~~~~~~~-~~~H~~~~~~~~~~~~~~i~~fl~~~ 897 (953)
.+.+|++|+|+++|++|..+| ++.++++.+.+...+..+++++++ ++||... .+..+.+.+.+.+||.+.
T Consensus 304 ~l~~I~~PtLvI~G~~D~~~p--~~~~~~la~~i~~a~~~~~l~~i~~~~GH~~~-le~p~~~~~~L~~FL~~~ 374 (379)
T PRK00175 304 ALARIKARFLVVSFTSDWLFP--PARSREIVDALLAAGADVSYAEIDSPYGHDAF-LLDDPRYGRLVRAFLERA 374 (379)
T ss_pred HHhcCCCCEEEEEECCccccC--HHHHHHHHHHHHhcCCCeEEEEeCCCCCchhH-hcCHHHHHHHHHHHHHhh
Confidence 346789999999999999988 999999999998877777888775 8999864 566778889999999874
No 142
>KOG0266 consensus WD40 repeat-containing protein [General function prediction only]
Probab=99.24 E-value=5.4e-10 Score=127.48 Aligned_cols=273 Identities=18% Similarity=0.178 Sum_probs=179.9
Q ss_pred CCCCceecCCCCEEEEEecCCCCC-----------ccccccccceeceEEecCCCCCCcceeeeeceEEEEccCCCCCCc
Q 002209 110 PLPALSFSPQRDKILFLKRRALPP-----------LEELARPEEKLAGLRIDGKCNTRSRMSFYTGIGIHQLFPDGKLGQ 178 (953)
Q Consensus 110 ~~~~~~~SPDG~~la~~~~~~~~~-----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~i~~~~~~g~~~~ 178 (953)
.+....|||||+.++....+.... +..+.........+.+.+++......+.+..|+|||++.++ ..
T Consensus 161 sv~~~~fs~~g~~l~~~~~~~~i~~~~~~~~~~~~~~~l~~h~~~v~~~~fs~d~~~l~s~s~D~tiriwd~~~~~--~~ 238 (456)
T KOG0266|consen 161 SVTCVDFSPDGRALAAASSDGLIRIWKLEGIKSNLLRELSGHTRGVSDVAFSPDGSYLLSGSDDKTLRIWDLKDDG--RN 238 (456)
T ss_pred ceEEEEEcCCCCeEEEccCCCcEEEeecccccchhhccccccccceeeeEECCCCcEEEEecCCceEEEeeccCCC--eE
Confidence 455678999999999886653222 22233333445667788888766666677889999995433 23
Q ss_pred eeeeecCCCCCcccceEeccCCCeEEEEEeeccccCCCCcceEEEEECCCCceeecccCCCccccccccceEEecCCeEE
Q 002209 179 EIEIQGFPDGAKLNFVTWSQDGKHLAFSIRIDAEDSSSSKLRVWVADVDTGKARPLFQSPDIYLNAIFDNFVWVNNSTLL 258 (953)
Q Consensus 179 ~~~l~~~~~~~~~~~~~wSPDG~~laf~~~~~~~~~~~~~~~l~~~d~~~g~~~~lt~~~~~~~~~~~~~~~wspDg~~l 258 (953)
.+.+.+++ ..+....|+|+|+.|+..+ .+..+.+||+.+|+..+........ +..+.+++||..|
T Consensus 239 ~~~l~gH~--~~v~~~~f~p~g~~i~Sgs---------~D~tvriWd~~~~~~~~~l~~hs~~----is~~~f~~d~~~l 303 (456)
T KOG0266|consen 239 LKTLKGHS--TYVTSVAFSPDGNLLVSGS---------DDGTVRIWDVRTGECVRKLKGHSDG----ISGLAFSPDGNLL 303 (456)
T ss_pred EEEecCCC--CceEEEEecCCCCEEEEec---------CCCcEEEEeccCCeEEEeeeccCCc----eEEEEECCCCCEE
Confidence 44555444 4789999999997766643 4667888888888876655444433 7789999999999
Q ss_pred EEEecCCCCCCCCCCCCCCCCceeecCCCccccchhhhhhcCCcchhhhhhhhccceEEEEEc-CCce---eEeCCC--C
Q 002209 259 VCTIPLLRGDPPKKPLVPLGPKMQSNEKRDIIQVRTFQDLLKDEYDEDLFDYYATTQLVLVSL-DGTV---KEIGPP--A 332 (953)
Q Consensus 259 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~l~~~~~-~g~~---~~l~~~--~ 332 (953)
+... ..+.|.++|+ +|.. +.+... .
T Consensus 304 ~s~s-------------------------------------------------~d~~i~vwd~~~~~~~~~~~~~~~~~~ 334 (456)
T KOG0266|consen 304 VSAS-------------------------------------------------YDGTIRVWDLETGSKLCLKLLSGAENS 334 (456)
T ss_pred EEcC-------------------------------------------------CCccEEEEECCCCceeeeecccCCCCC
Confidence 8651 1245677888 7762 233333 2
Q ss_pred -cccccccCCCCcEEEEEEecCCccccccCCCCCcceEEEeccCc-eEEEeccCCCcccCCccccccccCccceeeccCC
Q 002209 333 -VYTSLDPSPDEKYILISSIHRPYSFIVPCGRFPRQVGVWTTDGI-FVRELCDLPLAEDIPIAFNSVRKGMRSINWRSDK 410 (953)
Q Consensus 333 -~~~~~~~SpDG~~l~~~~~~~~~~~~~~~~~~~~~i~~~d~~g~-~~~~l~~~~~~~~~p~~~~~~~~~~~~~~wspDg 410 (953)
.++.+.|||+|++|+....++ .+.+|++... ..+....+.... .....+..+++|
T Consensus 335 ~~~~~~~fsp~~~~ll~~~~d~-------------~~~~w~l~~~~~~~~~~~~~~~~----------~~~~~~~~~~~~ 391 (456)
T KOG0266|consen 335 APVTSVQFSPNGKYLLSASLDR-------------TLKLWDLRSGKSVGTYTGHSNLV----------RCIFSPTLSTGG 391 (456)
T ss_pred CceeEEEECCCCcEEEEecCCC-------------eEEEEEccCCcceeeecccCCcc----------eeEecccccCCC
Confidence 468899999999999887543 8999999843 444444332210 011233447777
Q ss_pred CCceEEEEeccCCCcccccccCCeEEEEecCCCCCCCceEEeec-ccccCCeeeccCCceEEEEEecccCceEEEEE
Q 002209 411 PSTLYWAETQDGGDAKVEVTPRDIIYTQQAEPVQGEGPEILHKL-DLRYGGISWCDDSLALVYESWYKTRRTRTWVI 486 (953)
Q Consensus 411 ~~i~~~~~~~~~~~~~~~~~~~~~l~~~d~~~~~g~~~~~l~~~-~~~~~~~~~SpDg~~l~~~~~~~~~~~~l~~~ 486 (953)
+.|+-. .....+++|+. .++.....+..+ ...+..+.|+|....++..........++|..
T Consensus 392 ~~i~sg-------------~~d~~v~~~~~--~s~~~~~~l~~h~~~~~~~~~~~~~~~~~~s~s~~~d~~~~~w~~ 453 (456)
T KOG0266|consen 392 KLIYSG-------------SEDGSVYVWDS--SSGGILQRLEGHSKAAVSDLSSHPTENLIASSSFEGDGLIRLWKY 453 (456)
T ss_pred CeEEEE-------------eCCceEEEEeC--CccchhhhhcCCCCCceeccccCCCcCeeeecCcCCCceEEEecC
Confidence 766555 44667899986 334444455555 56667789999999988877544443455544
No 143
>KOG0266 consensus WD40 repeat-containing protein [General function prediction only]
Probab=99.23 E-value=1.2e-09 Score=124.67 Aligned_cols=248 Identities=16% Similarity=0.180 Sum_probs=154.2
Q ss_pred cccceEeccCCCeEEEEEeeccccCCCCcceEEEEECCCCc--eeecccCCCccccccccceEEecCCeEEEEEecCCCC
Q 002209 190 KLNFVTWSQDGKHLAFSIRIDAEDSSSSKLRVWVADVDTGK--ARPLFQSPDIYLNAIFDNFVWVNNSTLLVCTIPLLRG 267 (953)
Q Consensus 190 ~~~~~~wSPDG~~laf~~~~~~~~~~~~~~~l~~~d~~~g~--~~~lt~~~~~~~~~~~~~~~wspDg~~l~~~~~~~~~ 267 (953)
.+....+||||+.++.... ...+.++.+.+++ ..+.... .+..+..++|+|||+.|+...
T Consensus 161 sv~~~~fs~~g~~l~~~~~---------~~~i~~~~~~~~~~~~~~~l~~----h~~~v~~~~fs~d~~~l~s~s----- 222 (456)
T KOG0266|consen 161 SVTCVDFSPDGRALAAASS---------DGLIRIWKLEGIKSNLLRELSG----HTRGVSDVAFSPDGSYLLSGS----- 222 (456)
T ss_pred ceEEEEEcCCCCeEEEccC---------CCcEEEeecccccchhhccccc----cccceeeeEECCCCcEEEEec-----
Confidence 5666899999999888542 3455555555554 2211111 223378999999999887551
Q ss_pred CCCCCCCCCCCCceeecCCCccccchhhhhhcCCcchhhhhhhhccceEEEEEc--CC-ceeEeCCC-CcccccccCCCC
Q 002209 268 DPPKKPLVPLGPKMQSNEKRDIIQVRTFQDLLKDEYDEDLFDYYATTQLVLVSL--DG-TVKEIGPP-AVYTSLDPSPDE 343 (953)
Q Consensus 268 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~l~~~~~--~g-~~~~l~~~-~~~~~~~~SpDG 343 (953)
....|.++|+ .+ ..+.+... ..+...+|+|+|
T Consensus 223 --------------------------------------------~D~tiriwd~~~~~~~~~~l~gH~~~v~~~~f~p~g 258 (456)
T KOG0266|consen 223 --------------------------------------------DDKTLRIWDLKDDGRNLKTLKGHSTYVTSVAFSPDG 258 (456)
T ss_pred --------------------------------------------CCceEEEeeccCCCeEEEEecCCCCceEEEEecCCC
Confidence 2245666666 33 34555444 788999999999
Q ss_pred cEEEEEEecCCccccccCCCCCcceEEEeccCceE-EEeccCCCcccCCccccccccCccceeeccCCCCceEEEEeccC
Q 002209 344 KYILISSIHRPYSFIVPCGRFPRQVGVWTTDGIFV-RELCDLPLAEDIPIAFNSVRKGMRSINWRSDKPSTLYWAETQDG 422 (953)
Q Consensus 344 ~~l~~~~~~~~~~~~~~~~~~~~~i~~~d~~g~~~-~~l~~~~~~~~~p~~~~~~~~~~~~~~wspDg~~i~~~~~~~~~ 422 (953)
+.|+..+.+. .|.+||+.+++. +.+..+. .++..++|++||..|+-.
T Consensus 259 ~~i~Sgs~D~-------------tvriWd~~~~~~~~~l~~hs-------------~~is~~~f~~d~~~l~s~------ 306 (456)
T KOG0266|consen 259 NLLVSGSDDG-------------TVRIWDVRTGECVRKLKGHS-------------DGISGLAFSPDGNLLVSA------ 306 (456)
T ss_pred CEEEEecCCC-------------cEEEEeccCCeEEEeeeccC-------------CceEEEEECCCCCEEEEc------
Confidence 7777776443 999999996544 4454432 455779999999976655
Q ss_pred CCcccccccCCeEEEEecCCCCCCCc---eEEeecccc--cCCeeeccCCceEEEEEecccCceEEEEEcCCCCCCCcEE
Q 002209 423 GDAKVEVTPRDIIYTQQAEPVQGEGP---EILHKLDLR--YGGISWCDDSLALVYESWYKTRRTRTWVISPGSKDVAPRI 497 (953)
Q Consensus 423 ~~~~~~~~~~~~l~~~d~~~~~g~~~---~~l~~~~~~--~~~~~~SpDg~~l~~~~~~~~~~~~l~~~d~~~~~~~~~~ 497 (953)
+.++.+.+||+ .++.. ..+...... +..+.|+|+|++|+....+.. .++|.+.... ....
T Consensus 307 -------s~d~~i~vwd~---~~~~~~~~~~~~~~~~~~~~~~~~fsp~~~~ll~~~~d~~--~~~w~l~~~~---~~~~ 371 (456)
T KOG0266|consen 307 -------SYDGTIRVWDL---ETGSKLCLKLLSGAENSAPVTSVQFSPNGKYLLSASLDRT--LKLWDLRSGK---SVGT 371 (456)
T ss_pred -------CCCccEEEEEC---CCCceeeeecccCCCCCCceeEEEECCCCcEEEEecCCCe--EEEEEccCCc---ceee
Confidence 44668999996 44442 233333333 677899999999988765542 2566554222 1222
Q ss_pred eecCCCccccCCCCCCCeEeccCCCEEEEEeeeccCCCcEEEEecCCCCCCCCCCeEEEEECCCCceEEEeccC
Q 002209 498 LFDRSSEDVYSDPGSPMMRRTSTGTYVIAKIKKENDEGTYILLNGNGATPEGNIPFLDLFDINTGSKERIWESD 571 (953)
Q Consensus 498 ~~~~~~~~~~~~~~~p~~~~SpDG~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~d~~~~~~~~l~~~~ 571 (953)
....... .+.. .. ...+++|++++....+. .+++||+.++...+.....
T Consensus 372 ~~~~~~~-~~~~-~~--~~~~~~~~~i~sg~~d~---------------------~v~~~~~~s~~~~~~l~~h 420 (456)
T KOG0266|consen 372 YTGHSNL-VRCI-FS--PTLSTGGKLIYSGSEDG---------------------SVYVWDSSSGGILQRLEGH 420 (456)
T ss_pred ecccCCc-ceeE-ec--ccccCCCCeEEEEeCCc---------------------eEEEEeCCccchhhhhcCC
Confidence 2211111 1100 01 33578888888777433 3999999876655444433
No 144
>KOG2055 consensus WD40 repeat protein [General function prediction only]
Probab=99.22 E-value=5.7e-10 Score=116.29 Aligned_cols=254 Identities=15% Similarity=0.173 Sum_probs=156.9
Q ss_pred eceEEEEccCCCCCCceeeeecCC-CCCcccceEeccCCCeEEEEEeeccccCCCCcceEEEEECCCCceeecccCCCcc
Q 002209 163 TGIGIHQLFPDGKLGQEIEIQGFP-DGAKLNFVTWSQDGKHLAFSIRIDAEDSSSSKLRVWVADVDTGKARPLFQSPDIY 241 (953)
Q Consensus 163 ~~i~i~~~~~~g~~~~~~~l~~~~-~~~~~~~~~wSPDG~~laf~~~~~~~~~~~~~~~l~~~d~~~g~~~~lt~~~~~~ 241 (953)
+.+.|+.+ ||.... .|+.+- ....+....|+|+|+..+|++. -..-+|.+|+.+.+..++-......
T Consensus 235 ~~lrifqv--DGk~N~--~lqS~~l~~fPi~~a~f~p~G~~~i~~s~--------rrky~ysyDle~ak~~k~~~~~g~e 302 (514)
T KOG2055|consen 235 GTLRIFQV--DGKVNP--KLQSIHLEKFPIQKAEFAPNGHSVIFTSG--------RRKYLYSYDLETAKVTKLKPPYGVE 302 (514)
T ss_pred CcEEEEEe--cCccCh--hheeeeeccCccceeeecCCCceEEEecc--------cceEEEEeeccccccccccCCCCcc
Confidence 46678777 564332 232221 1236788899999995555443 2567899999998877765433221
Q ss_pred ccccccceEEecCCeEEEEEecCCCCCCCCCCCCCCCCceeecCCCccccchhhhhhcCCcchhhhhhhhccceEEEEEc
Q 002209 242 LNAIFDNFVWVNNSTLLVCTIPLLRGDPPKKPLVPLGPKMQSNEKRDIIQVRTFQDLLKDEYDEDLFDYYATTQLVLVSL 321 (953)
Q Consensus 242 ~~~~~~~~~wspDg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~l~~~~~ 321 (953)
...+..+..|+|++.|++.. ..+.|+++..
T Consensus 303 -~~~~e~FeVShd~~fia~~G-------------------------------------------------~~G~I~lLha 332 (514)
T KOG2055|consen 303 -EKSMERFEVSHDSNFIAIAG-------------------------------------------------NNGHIHLLHA 332 (514)
T ss_pred -cchhheeEecCCCCeEEEcc-------------------------------------------------cCceEEeehh
Confidence 12367899999999988761 3356777776
Q ss_pred -CCce-eEeCCCCcccccccCCCCcEEEEEEecCCccccccCCCCCcceEEEeccCc-eEEEeccCCCcccCCccccccc
Q 002209 322 -DGTV-KEIGPPAVYTSLDPSPDEKYILISSIHRPYSFIVPCGRFPRQVGVWTTDGI-FVRELCDLPLAEDIPIAFNSVR 398 (953)
Q Consensus 322 -~g~~-~~l~~~~~~~~~~~SpDG~~l~~~~~~~~~~~~~~~~~~~~~i~~~d~~g~-~~~~l~~~~~~~~~p~~~~~~~ 398 (953)
+++. ..+-.++.+..+.||.||+.|+.+... ++||+||+... -.+.......
T Consensus 333 kT~eli~s~KieG~v~~~~fsSdsk~l~~~~~~-------------GeV~v~nl~~~~~~~rf~D~G~------------ 387 (514)
T KOG2055|consen 333 KTKELITSFKIEGVVSDFTFSSDSKELLASGGT-------------GEVYVWNLRQNSCLHRFVDDGS------------ 387 (514)
T ss_pred hhhhhhheeeeccEEeeEEEecCCcEEEEEcCC-------------ceEEEEecCCcceEEEEeecCc------------
Confidence 6642 222223788899999999999887633 39999999844 2333333211
Q ss_pred cCccceeeccCCCCceEEEEeccCCCcccccccCCeEEEEecC-CCCCCCceEEe---ecccccCCeeeccCCceEEEEE
Q 002209 399 KGMRSINWRSDKPSTLYWAETQDGGDAKVEVTPRDIIYTQQAE-PVQGEGPEILH---KLDLRYGGISWCDDSLALVYES 474 (953)
Q Consensus 399 ~~~~~~~wspDg~~i~~~~~~~~~~~~~~~~~~~~~l~~~d~~-~~~g~~~~~l~---~~~~~~~~~~~SpDg~~l~~~~ 474 (953)
....+++-|++|+.+|.. +..+.|-+|+.. ...++.++.+. +....+.++.|++|+..|+..+
T Consensus 388 v~gts~~~S~ng~ylA~G-------------S~~GiVNIYd~~s~~~s~~PkPik~~dNLtt~Itsl~Fn~d~qiLAiaS 454 (514)
T KOG2055|consen 388 VHGTSLCISLNGSYLATG-------------SDSGIVNIYDGNSCFASTNPKPIKTVDNLTTAITSLQFNHDAQILAIAS 454 (514)
T ss_pred cceeeeeecCCCceEEec-------------cCcceEEEeccchhhccCCCCchhhhhhhheeeeeeeeCcchhhhhhhh
Confidence 122468889999855554 445566666631 12345555543 3344577899999999998887
Q ss_pred ecccCceEEEEEcCCCCCCCcEEeecCC-----CccccCCCCCCCeEeccCCCEEEEEe
Q 002209 475 WYKTRRTRTWVISPGSKDVAPRILFDRS-----SEDVYSDPGSPMMRRTSTGTYVIAKI 528 (953)
Q Consensus 475 ~~~~~~~~l~~~d~~~~~~~~~~~~~~~-----~~~~~~~~~~p~~~~SpDG~~l~~~~ 528 (953)
.......+|..+. +. .++..-+ ...+.. +.|||.|.++++..
T Consensus 455 ~~~knalrLVHvP--S~----TVFsNfP~~n~~vg~vtc------~aFSP~sG~lAvGN 501 (514)
T KOG2055|consen 455 RVKKNALRLVHVP--SC----TVFSNFPTSNTKVGHVTC------MAFSPNSGYLAVGN 501 (514)
T ss_pred hccccceEEEecc--ce----eeeccCCCCCCcccceEE------EEecCCCceEEeec
Confidence 6554433444443 21 1221111 111112 78999999999886
No 145
>PF00756 Esterase: Putative esterase; InterPro: IPR000801 This family contains several seemingly unrelated proteins, including human esterase D; mycobacterial antigen 85, which is responsible for the high affinity of mycobacteria to fibronectin; Corynebacterium glutamicum major secreted protein PS1; and hypothetical proteins from Escherichia coli, yeast, mycobacteria and Haemophilus influenzae.; PDB: 3LS2_A 1VA5_B 1DQZ_B 3HRH_A 1DQY_A 2GZR_A 2GZS_A 3GFF_A 1R88_A 3E4D_D ....
Probab=99.22 E-value=1.7e-11 Score=129.34 Aligned_cols=219 Identities=25% Similarity=0.363 Sum_probs=122.3
Q ss_pred CcEEEEEEEcCCCCCCCCCCCccEEEEeCCC-CCcCcCCCCcccCCCCCCCCcc-chHHHHHHHcC----cEEEEcCCCC
Q 002209 649 GVQLSATLYLPPGYDPSKDGPLPCLFWSYPG-EFKSKDAAGQVRGSPNEFPRIG-STSVLLWLARG----FAILGGPTTP 722 (953)
Q Consensus 649 g~~~~~~l~~P~~~~~~~~~~~P~vv~~hGg-~~~~~~~~~~~~~~~~~~~~~~-~~~~~~la~~G----~~V~~~~~~~ 722 (953)
|..+..++|+|++|.+.+ ++|+|+++||. .+ +.... ......++..| .+++.++..+
T Consensus 5 g~~~~~~VylP~~y~~~~--~~PvlylldG~~~~---------------~~~~~~~~~~~~~~~~~~~~~~iiV~i~~~~ 67 (251)
T PF00756_consen 5 GRDRRVWVYLPPGYDPSK--PYPVLYLLDGQSGW---------------FRNGNAQEALDRLIAEGKIPPMIIVVIPNGD 67 (251)
T ss_dssp TEEEEEEEEECTTGGTTT--TEEEEEEESHTTHH---------------HHHHHHHHHHHHHHHHHTSEEEEEEEEESSS
T ss_pred CCeEEEEEEECCCCCCCC--CCEEEEEccCCccc---------------cccchHHHHHHHHHHhCCCCceEEEEEeccc
Confidence 667899999999984444 69999999993 10 00000 11122234443 4444433322
Q ss_pred CC-CCCC-------------hhhhhhhHHHHHHHHHHHHHHHHHcCCCCCCcEEEEEeChHHHHHHHHHHhCCCcccEEE
Q 002209 723 II-GEGD-------------EEANDRFVEQLVACAEAAVEEVVRRGVAHPSKIAVGGHSYGAFMTANLLAHAPHLFCCGI 788 (953)
Q Consensus 723 ~~-G~G~-------------~~~~~~~~~~~~~D~~~~~~~l~~~~~~d~~~i~l~G~S~GG~~a~~~a~~~p~~~~a~v 788 (953)
.. .++. ......+.....+ +.+.++.++..+++++.+|+|+||||+.|+.++.++|+.|.+++
T Consensus 68 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~---el~p~i~~~~~~~~~~~~i~G~S~GG~~Al~~~l~~Pd~F~~~~ 144 (251)
T PF00756_consen 68 NSRFYTSWYLPAGSSRRADDSGGGDAYETFLTE---ELIPYIEANYRTDPDRRAIAGHSMGGYGALYLALRHPDLFGAVI 144 (251)
T ss_dssp TSSTTSBTTSSBCTTCBCTSTTTHHHHHHHHHT---HHHHHHHHHSSEEECCEEEEEETHHHHHHHHHHHHSTTTESEEE
T ss_pred ccccccccccccccccccccCCCCcccceehhc---cchhHHHHhcccccceeEEeccCCCcHHHHHHHHhCcccccccc
Confidence 21 1000 0011222222233 45566777777776679999999999999999999999999999
Q ss_pred EcccCCCCCCCCcCcccccchhhhhHHHHHhcCcccccCCCCCcEEEEEeCCCCCCC--------CchHHHHHHHHHHHh
Q 002209 789 ARSGAYNRTLTPFGFQNEDRTLWEATSTYVEMSPFMSANKLKKPILLVHGEEDNNSG--------TLTMQSDRFFNALKG 860 (953)
Q Consensus 789 ~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~sp~~~~~~i~~P~Li~~G~~D~~v~--------~~~~~~~~~~~~l~~ 860 (953)
+++|.++.....|+. .....|.....+.... ......-..++++..|+.|.... .......++.+.|+.
T Consensus 145 ~~S~~~~~~~~~w~~--~~~~~~~~~~~~~~~~-~~~~~~~~~~i~l~~G~~d~~~~~~~~~~~~~~~~~~~~~~~~l~~ 221 (251)
T PF00756_consen 145 AFSGALDPSPSLWGP--SDDEAWKENDPFDLIK-ALSQKKKPLRIYLDVGTKDEFGGWEDSAQILQFLANNRELAQLLKA 221 (251)
T ss_dssp EESEESETTHCHHHH--STCGHHGGCHHHHHHH-HHHHTTSEEEEEEEEETTSTTHHCSHHHHHHHHHHHHHHHHHHCCC
T ss_pred ccCccccccccccCc--CCcHHhhhccHHHHhh-hhhcccCCCeEEEEeCCCCcccccccCHHHHHHHHHhHhhHHHHHH
Confidence 999986643211111 1111111111111100 00112234678999999998421 001233444445556
Q ss_pred CCCcEEEEEeCCCCccCCCcccHHHHHHHHHHHH
Q 002209 861 HGALCRLVILPFESHGYAARESIMHVLWETDRWL 894 (953)
Q Consensus 861 ~g~~~~~~~~~~~~H~~~~~~~~~~~~~~i~~fl 894 (953)
.+.+..+..++| +|.+. .+...+...+.||
T Consensus 222 ~g~~~~~~~~~G-~H~~~---~W~~~l~~~L~~~ 251 (251)
T PF00756_consen 222 KGIPHTYHVFPG-GHDWA---YWRRRLPDALPWM 251 (251)
T ss_dssp EECTTESEEEHS-ESSHH---HHHHHHHHHHHHH
T ss_pred cCCCceEEEecC-ccchh---hHHHHHHHHHhhC
Confidence 677888888995 78652 2444455555554
No 146
>PF10282 Lactonase: Lactonase, 7-bladed beta-propeller; InterPro: IPR019405 6-phosphogluconolactonases (6PGL) 3.1.1.31 from EC, which hydrolyses 6-phosphogluconolactone to 6-phosphogluconate is opne of the enzymes in the pentose phosphate pathway. Two families of structurally dissimilar 6PGLs are known to exist: the Escherichia coli (strain K12) YbhE IPR022528 from INTERPRO [] and the Pseudomonas aeruginosa DevB IPR005900 from INTERPRO [] types. This entry contains bacterial 6-phosphogluconolactonases (6PGL) YbhE-type 3.1.1.31 from EC which hydrolyse 6-phosphogluconolactone to 6-phosphogluconate. The entry also contains the fungal muconate lactonizing enzyme carboxy-cis,cis-muconate cyclase 5.5.1.5 from EC and muconate cycloisomerase 5.5.1.1 from EC, which convert cis,cis-muconates to muconolactones and vice versa as part of the microbial beta-ketoadipate pathway. Structures have been reported for the E. coli 6-phosphogluconolactonase and Neurospora crassa muconate cycloisomerase. Structures of proteins in this family have revealed a 7-bladed beta-propeller fold [].; PDB: 3SCY_A 1L0Q_A 3HFQ_B 3FGB_A 1RI6_A 3U4Y_A 3BWS_A 1JOF_H.
Probab=99.22 E-value=4.3e-09 Score=115.93 Aligned_cols=290 Identities=16% Similarity=0.201 Sum_probs=153.9
Q ss_pred ceEEEEccCCCCCCceeeeecCCCCCcccceEeccCCCeEEEEEeeccccCCCCcceEEEEECCCCceeecccCCCcccc
Q 002209 164 GIGIHQLFPDGKLGQEIEIQGFPDGAKLNFVTWSQDGKHLAFSIRIDAEDSSSSKLRVWVADVDTGKARPLFQSPDIYLN 243 (953)
Q Consensus 164 ~i~i~~~~~~g~~~~~~~l~~~~~~~~~~~~~wSPDG~~laf~~~~~~~~~~~~~~~l~~~d~~~g~~~~lt~~~~~~~~ 243 (953)
.|+++++..+. +.-..+.............++||++.|+.+... ....+....|.++.++|+...+...+...
T Consensus 14 gI~~~~~d~~~--g~l~~~~~~~~~~~Ps~l~~~~~~~~LY~~~e~---~~~~g~v~~~~i~~~~g~L~~~~~~~~~g-- 86 (345)
T PF10282_consen 14 GIYVFRFDEET--GTLTLVQTVAEGENPSWLAVSPDGRRLYVVNEG---SGDSGGVSSYRIDPDTGTLTLLNSVPSGG-- 86 (345)
T ss_dssp EEEEEEEETTT--TEEEEEEEEEESSSECCEEE-TTSSEEEEEETT---SSTTTEEEEEEEETTTTEEEEEEEEEESS--
T ss_pred cEEEEEEcCCC--CCceEeeeecCCCCCceEEEEeCCCEEEEEEcc---ccCCCCEEEEEECCCcceeEEeeeeccCC--
Confidence 67888873222 333333322233467888999999877765421 01344556677776667766554332110
Q ss_pred ccccceEEecCCeEEEEEecCCCCCCCCCCCCCCCCceeecCCCccccchhhhhhcCCcchhhhhhhhccceEEEEEc--
Q 002209 244 AIFDNFVWVNNSTLLVCTIPLLRGDPPKKPLVPLGPKMQSNEKRDIIQVRTFQDLLKDEYDEDLFDYYATTQLVLVSL-- 321 (953)
Q Consensus 244 ~~~~~~~wspDg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~l~~~~~-- 321 (953)
...-.++.+|||+.|+++- |..+.+.++++
T Consensus 87 ~~p~~i~~~~~g~~l~van------------------------------------------------y~~g~v~v~~l~~ 118 (345)
T PF10282_consen 87 SSPCHIAVDPDGRFLYVAN------------------------------------------------YGGGSVSVFPLDD 118 (345)
T ss_dssp SCEEEEEECTTSSEEEEEE------------------------------------------------TTTTEEEEEEECT
T ss_pred CCcEEEEEecCCCEEEEEE------------------------------------------------ccCCeEEEEEccC
Confidence 0023567789999999771 23455666666
Q ss_pred CCceeEeC--------------CC-CcccccccCCCCcEEEEEEecCCccccccCCCCCcceEEEeccCce--EEEeccC
Q 002209 322 DGTVKEIG--------------PP-AVYTSLDPSPDEKYILISSIHRPYSFIVPCGRFPRQVGVWTTDGIF--VRELCDL 384 (953)
Q Consensus 322 ~g~~~~l~--------------~~-~~~~~~~~SpDG~~l~~~~~~~~~~~~~~~~~~~~~i~~~d~~g~~--~~~l~~~ 384 (953)
+|...... .. .....+.++|||+++++.... ...|++++++... .......
T Consensus 119 ~g~l~~~~~~~~~~g~g~~~~rq~~~h~H~v~~~pdg~~v~v~dlG------------~D~v~~~~~~~~~~~l~~~~~~ 186 (345)
T PF10282_consen 119 DGSLGEVVQTVRHEGSGPNPDRQEGPHPHQVVFSPDGRFVYVPDLG------------ADRVYVYDIDDDTGKLTPVDSI 186 (345)
T ss_dssp TSEEEEEEEEEESEEEESSTTTTSSTCEEEEEE-TTSSEEEEEETT------------TTEEEEEEE-TTS-TEEEEEEE
T ss_pred CcccceeeeecccCCCCCcccccccccceeEEECCCCCEEEEEecC------------CCEEEEEEEeCCCceEEEeecc
Confidence 46433321 01 233467899999999776522 2378888887433 3321111
Q ss_pred CCcccCCccccccccCccceeeccCCCCceEEEEeccCCCcccccccCCeEEEEecCCCCCCCceEEe---ec--cc---
Q 002209 385 PLAEDIPIAFNSVRKGMRSINWRSDKPSTLYWAETQDGGDAKVEVTPRDIIYTQQAEPVQGEGPEILH---KL--DL--- 456 (953)
Q Consensus 385 ~~~~~~p~~~~~~~~~~~~~~wspDg~~i~~~~~~~~~~~~~~~~~~~~~l~~~d~~~~~g~~~~~l~---~~--~~--- 456 (953)
.. ....|+|.+.|+|||+.+ |.+.+. .+.|.++++++ ..+..+.+. .. ..
T Consensus 187 ~~---------~~G~GPRh~~f~pdg~~~-Yv~~e~-----------s~~v~v~~~~~-~~g~~~~~~~~~~~~~~~~~~ 244 (345)
T PF10282_consen 187 KV---------PPGSGPRHLAFSPDGKYA-YVVNEL-----------SNTVSVFDYDP-SDGSLTEIQTISTLPEGFTGE 244 (345)
T ss_dssp EC---------STTSSEEEEEE-TTSSEE-EEEETT-----------TTEEEEEEEET-TTTEEEEEEEEESCETTSCSS
T ss_pred cc---------ccCCCCcEEEEcCCcCEE-EEecCC-----------CCcEEEEeecc-cCCceeEEEEeeecccccccc
Confidence 10 112577899999999864 443322 34566666511 233333321 11 11
Q ss_pred -ccCCeeeccCCceEEEEEecccCceEEEEEcCCCCCCCcEEeecCCCccccCCCCCC-CeEeccCCCEEEEEeeeccCC
Q 002209 457 -RYGGISWCDDSLALVYESWYKTRRTRTWVISPGSKDVAPRILFDRSSEDVYSDPGSP-MMRRTSTGTYVIAKIKKENDE 534 (953)
Q Consensus 457 -~~~~~~~SpDg~~l~~~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~p-~~~~SpDG~~l~~~~~~~~~~ 534 (953)
....+.+||||++|+.+. +......+|.++..++ ....+....... ..| .+.++|||++|+......
T Consensus 245 ~~~~~i~ispdg~~lyvsn-r~~~sI~vf~~d~~~g--~l~~~~~~~~~G-----~~Pr~~~~s~~g~~l~Va~~~s--- 313 (345)
T PF10282_consen 245 NAPAEIAISPDGRFLYVSN-RGSNSISVFDLDPATG--TLTLVQTVPTGG-----KFPRHFAFSPDGRYLYVANQDS--- 313 (345)
T ss_dssp SSEEEEEE-TTSSEEEEEE-CTTTEEEEEEECTTTT--TEEEEEEEEESS-----SSEEEEEE-TTSSEEEEEETTT---
T ss_pred CCceeEEEecCCCEEEEEe-ccCCEEEEEEEecCCC--ceEEEEEEeCCC-----CCccEEEEeCCCCEEEEEecCC---
Confidence 223478999999887764 4434334555554543 333332211110 001 178899999998775321
Q ss_pred CcEEEEecCCCCCCCCCCeEEEEECCCCceEEEe
Q 002209 535 GTYILLNGNGATPEGNIPFLDLFDINTGSKERIW 568 (953)
Q Consensus 535 ~~~~~~~~~~~~~~~~~~~L~~~d~~~~~~~~l~ 568 (953)
+.-.++.+|.++|+++.+-
T Consensus 314 ---------------~~v~vf~~d~~tG~l~~~~ 332 (345)
T PF10282_consen 314 ---------------NTVSVFDIDPDTGKLTPVG 332 (345)
T ss_dssp ---------------TEEEEEEEETTTTEEEEEE
T ss_pred ---------------CeEEEEEEeCCCCcEEEec
Confidence 2334566677788776654
No 147
>KOG0293 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.22 E-value=4.2e-10 Score=115.41 Aligned_cols=194 Identities=16% Similarity=0.199 Sum_probs=127.9
Q ss_pred cccceEeccCCCeEEEEEeeccccCCCCcceEEEEECCCCc--eeecccCCCccccccccceEEecCCeEEEEEecCCCC
Q 002209 190 KLNFVTWSQDGKHLAFSIRIDAEDSSSSKLRVWVADVDTGK--ARPLFQSPDIYLNAIFDNFVWVNNSTLLVCTIPLLRG 267 (953)
Q Consensus 190 ~~~~~~wSPDG~~laf~~~~~~~~~~~~~~~l~~~d~~~g~--~~~lt~~~~~~~~~~~~~~~wspDg~~l~~~~~~~~~ 267 (953)
.+-+..||++|++||..+ .+...-||.+..++.- ...+..+... +..+.||||.+.|+...
T Consensus 226 EVWfl~FS~nGkyLAsaS-------kD~Taiiw~v~~d~~~kl~~tlvgh~~~-----V~yi~wSPDdryLlaCg----- 288 (519)
T KOG0293|consen 226 EVWFLQFSHNGKYLASAS-------KDSTAIIWIVVYDVHFKLKKTLVGHSQP-----VSYIMWSPDDRYLLACG----- 288 (519)
T ss_pred cEEEEEEcCCCeeEeecc-------CCceEEEEEEecCcceeeeeeeecccCc-----eEEEEECCCCCeEEecC-----
Confidence 688899999999999865 3446678888766541 1223232222 67889999999888551
Q ss_pred CCCCCCCCCCCCceeecCCCccccchhhhhhcCCcchhhhhhhhccceEEEEEc-CCceeEeCCC---CcccccccCCCC
Q 002209 268 DPPKKPLVPLGPKMQSNEKRDIIQVRTFQDLLKDEYDEDLFDYYATTQLVLVSL-DGTVKEIGPP---AVYTSLDPSPDE 343 (953)
Q Consensus 268 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~l~~~~~-~g~~~~l~~~---~~~~~~~~SpDG 343 (953)
....+++.|+ +|..+..... ..+++.+|-|||
T Consensus 289 --------------------------------------------~~e~~~lwDv~tgd~~~~y~~~~~~S~~sc~W~pDg 324 (519)
T KOG0293|consen 289 --------------------------------------------FDEVLSLWDVDTGDLRHLYPSGLGFSVSSCAWCPDG 324 (519)
T ss_pred --------------------------------------------chHheeeccCCcchhhhhcccCcCCCcceeEEccCC
Confidence 1123677788 8876665543 456789999999
Q ss_pred cEEEEEEecCCccccccCCCCCcceEEEeccCceEEEeccCCCcccCCccccccccCccceeeccCCCCceEEEEeccCC
Q 002209 344 KYILISSIHRPYSFIVPCGRFPRQVGVWTTDGIFVRELCDLPLAEDIPIAFNSVRKGMRSINWRSDKPSTLYWAETQDGG 423 (953)
Q Consensus 344 ~~l~~~~~~~~~~~~~~~~~~~~~i~~~d~~g~~~~~l~~~~~~~~~p~~~~~~~~~~~~~~wspDg~~i~~~~~~~~~~ 423 (953)
.+++..+.++ .+..||++|.......... . ..+..++.++||+.++..
T Consensus 325 ~~~V~Gs~dr-------------~i~~wdlDgn~~~~W~gvr----~--------~~v~dlait~Dgk~vl~v------- 372 (519)
T KOG0293|consen 325 FRFVTGSPDR-------------TIIMWDLDGNILGNWEGVR----D--------PKVHDLAITYDGKYVLLV------- 372 (519)
T ss_pred ceeEecCCCC-------------cEEEecCCcchhhcccccc----c--------ceeEEEEEcCCCcEEEEE-------
Confidence 9988877443 8999999986533221110 0 123568899999987776
Q ss_pred CcccccccCCeEEEEecCCCCCCCceEEeecccccCCeeeccCCceEEEEEecccCceEEEEEc
Q 002209 424 DAKVEVTPRDIIYTQQAEPVQGEGPEILHKLDLRYGGISWCDDSLALVYESWYKTRRTRTWVIS 487 (953)
Q Consensus 424 ~~~~~~~~~~~l~~~d~~~~~g~~~~~l~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~l~~~d 487 (953)
.....+.+++. ....-+-+...+..+.++..|.||+.++..-... ..+||-+.
T Consensus 373 ------~~d~~i~l~~~---e~~~dr~lise~~~its~~iS~d~k~~LvnL~~q--ei~LWDl~ 425 (519)
T KOG0293|consen 373 ------TVDKKIRLYNR---EARVDRGLISEEQPITSFSISKDGKLALVNLQDQ--EIHLWDLE 425 (519)
T ss_pred ------ecccceeeech---hhhhhhccccccCceeEEEEcCCCcEEEEEcccC--eeEEeecc
Confidence 33446677764 2222232445566678899999999876654333 23566554
No 148
>PRK11126 2-succinyl-6-hydroxy-2,4-cyclohexadiene-1-carboxylate synthase; Provisional
Probab=99.21 E-value=3.9e-10 Score=118.34 Aligned_cols=188 Identities=15% Similarity=0.094 Sum_probs=110.5
Q ss_pred ccEEEEeCCCCCcCcCCCCcccCCCCCCCCccchHHHHHHHcCcEEEEcCCCCCCCCCChhhhh-hhHHHHHHHHHHHHH
Q 002209 670 LPCLFWSYPGEFKSKDAAGQVRGSPNEFPRIGSTSVLLWLARGFAILGGPTTPIIGEGDEEAND-RFVEQLVACAEAAVE 748 (953)
Q Consensus 670 ~P~vv~~hGg~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~G~~V~~~~~~~~~G~G~~~~~~-~~~~~~~~D~~~~~~ 748 (953)
.|.||++||.+... ..|. .....| ++|.|++ .+.+|+|.+.... ..+....+|+.+.++
T Consensus 2 ~p~vvllHG~~~~~--------------~~w~-~~~~~l--~~~~vi~---~D~~G~G~S~~~~~~~~~~~~~~l~~~l~ 61 (242)
T PRK11126 2 LPWLVFLHGLLGSG--------------QDWQ-PVGEAL--PDYPRLY---IDLPGHGGSAAISVDGFADVSRLLSQTLQ 61 (242)
T ss_pred CCEEEEECCCCCCh--------------HHHH-HHHHHc--CCCCEEE---ecCCCCCCCCCccccCHHHHHHHHHHHHH
Confidence 36799999964211 1111 223333 4799999 4556777764432 133444555555544
Q ss_pred HHHHcCCCCCCcEEEEEeChHHHHHHHHHHhCCC-cccEEEEcccCCCCCCC-----------CcC--ccccc-------
Q 002209 749 EVVRRGVAHPSKIAVGGHSYGAFMTANLLAHAPH-LFCCGIARSGAYNRTLT-----------PFG--FQNED------- 807 (953)
Q Consensus 749 ~l~~~~~~d~~~i~l~G~S~GG~~a~~~a~~~p~-~~~a~v~~~~~~d~~~~-----------~~~--~~~~~------- 807 (953)
.+ +.+++.++||||||.+++.++.++|+ +++++++.++....... .+. +....
T Consensus 62 ~~------~~~~~~lvG~S~Gg~va~~~a~~~~~~~v~~lvl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 135 (242)
T PRK11126 62 SY------NILPYWLVGYSLGGRIAMYYACQGLAGGLCGLIVEGGNPGLQNAEERQARWQNDRQWAQRFRQEPLEQVLAD 135 (242)
T ss_pred Hc------CCCCeEEEEECHHHHHHHHHHHhCCcccccEEEEeCCCCCCCCHHHHHHHHhhhHHHHHHhccCcHHHHHHH
Confidence 32 24689999999999999999999865 49999887654321000 000 00000
Q ss_pred ---ch-----hhhhHHHH----------------Hhc------CcccccCCCCCcEEEEEeCCCCCCCCchHHHHHHHHH
Q 002209 808 ---RT-----LWEATSTY----------------VEM------SPFMSANKLKKPILLVHGEEDNNSGTLTMQSDRFFNA 857 (953)
Q Consensus 808 ---~~-----~~~~~~~~----------------~~~------sp~~~~~~i~~P~Li~~G~~D~~v~~~~~~~~~~~~~ 857 (953)
.. .......+ ... +....+.++++|+|+++|++|..+. . +.+.
T Consensus 136 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~i~~P~lii~G~~D~~~~---~----~~~~ 208 (242)
T PRK11126 136 WYQQPVFASLNAEQRQQLVAKRSNNNGAAVAAMLEATSLAKQPDLRPALQALTFPFYYLCGERDSKFQ---A----LAQQ 208 (242)
T ss_pred HHhcchhhccCccHHHHHHHhcccCCHHHHHHHHHhcCcccCCcHHHHhhccCCCeEEEEeCCcchHH---H----HHHH
Confidence 00 00000000 000 1112456789999999999997531 1 2121
Q ss_pred HHhCCCcEEEEEeCCCCccCCCcccHHHHHHHHHHHHHH
Q 002209 858 LKGHGALCRLVILPFESHGYAARESIMHVLWETDRWLQK 896 (953)
Q Consensus 858 l~~~g~~~~~~~~~~~~H~~~~~~~~~~~~~~i~~fl~~ 896 (953)
. ..++++++++||.+. .++.+.+.+.+.+||.+
T Consensus 209 ~-----~~~~~~i~~~gH~~~-~e~p~~~~~~i~~fl~~ 241 (242)
T PRK11126 209 L-----ALPLHVIPNAGHNAH-RENPAAFAASLAQILRL 241 (242)
T ss_pred h-----cCeEEEeCCCCCchh-hhChHHHHHHHHHHHhh
Confidence 1 368999999999774 57778888888888864
No 149
>KOG0286 consensus G-protein beta subunit [General function prediction only]
Probab=99.20 E-value=9.7e-09 Score=101.28 Aligned_cols=257 Identities=12% Similarity=0.142 Sum_probs=160.4
Q ss_pred eeeeecCCCCCcccceEeccCCCeEEEEEeeccccCCCCcceEEEEECCCCceeecccCCCccccccccceEEecCCeEE
Q 002209 179 EIEIQGFPDGAKLNFVTWSQDGKHLAFSIRIDAEDSSSSKLRVWVADVDTGKARPLFQSPDIYLNAIFDNFVWVNNSTLL 258 (953)
Q Consensus 179 ~~~l~~~~~~~~~~~~~wSPDG~~laf~~~~~~~~~~~~~~~l~~~d~~~g~~~~lt~~~~~~~~~~~~~~~wspDg~~l 258 (953)
.+.|.++. ..+....|++|+++|+-.+. +..|.+||.-+....+....+... +-.++++|.|+.+
T Consensus 48 rr~LkGH~--~Ki~~~~ws~Dsr~ivSaSq---------DGklIvWDs~TtnK~haipl~s~W----VMtCA~sPSg~~V 112 (343)
T KOG0286|consen 48 RRTLKGHL--NKIYAMDWSTDSRRIVSASQ---------DGKLIVWDSFTTNKVHAIPLPSSW----VMTCAYSPSGNFV 112 (343)
T ss_pred EEEecccc--cceeeeEecCCcCeEEeecc---------CCeEEEEEcccccceeEEecCcee----EEEEEECCCCCeE
Confidence 34554433 47999999999999998764 568888898765544444445443 6789999999999
Q ss_pred EEEecCCCCCCCCCCCCCCCCceeecCCCccccchhhhhhcCCcchhhhhhhhccceEEEEEc---CC---ceeEeCCC-
Q 002209 259 VCTIPLLRGDPPKKPLVPLGPKMQSNEKRDIIQVRTFQDLLKDEYDEDLFDYYATTQLVLVSL---DG---TVKEIGPP- 331 (953)
Q Consensus 259 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~l~~~~~---~g---~~~~l~~~- 331 (953)
+...-+ ..-.||.+.. +| ..+.+...
T Consensus 113 AcGGLd-----------------------------------------------N~Csiy~ls~~d~~g~~~v~r~l~gHt 145 (343)
T KOG0286|consen 113 ACGGLD-----------------------------------------------NKCSIYPLSTRDAEGNVRVSRELAGHT 145 (343)
T ss_pred EecCcC-----------------------------------------------ceeEEEecccccccccceeeeeecCcc
Confidence 976100 1112333322 22 22334444
Q ss_pred CcccccccCCCCcEEEEEEecCCccccccCCCCCcceEEEeccCceEEE-eccCCCcccCCccccccccCccceeecc-C
Q 002209 332 AVYTSLDPSPDEKYILISSIHRPYSFIVPCGRFPRQVGVWTTDGIFVRE-LCDLPLAEDIPIAFNSVRKGMRSINWRS-D 409 (953)
Q Consensus 332 ~~~~~~~~SpDG~~l~~~~~~~~~~~~~~~~~~~~~i~~~d~~g~~~~~-l~~~~~~~~~p~~~~~~~~~~~~~~wsp-D 409 (953)
++.+...|-+|+. |+..+.+ ...-+||++.++... ...+. .-+-++.++| |
T Consensus 146 gylScC~f~dD~~-ilT~SGD-------------~TCalWDie~g~~~~~f~GH~-------------gDV~slsl~p~~ 198 (343)
T KOG0286|consen 146 GYLSCCRFLDDNH-ILTGSGD-------------MTCALWDIETGQQTQVFHGHT-------------GDVMSLSLSPSD 198 (343)
T ss_pred ceeEEEEEcCCCc-eEecCCC-------------ceEEEEEcccceEEEEecCCc-------------ccEEEEecCCCC
Confidence 6677778887775 5555533 378899999665443 33332 3345788899 7
Q ss_pred CCCceEEEEeccCCCcccccccCCeEEEEecCCCCCCCceEEeecccccCCeeeccCCceEEEEEecccCceEEEEEcCC
Q 002209 410 KPSTLYWAETQDGGDAKVEVTPRDIIYTQQAEPVQGEGPEILHKLDLRYGGISWCDDSLALVYESWYKTRRTRTWVISPG 489 (953)
Q Consensus 410 g~~i~~~~~~~~~~~~~~~~~~~~~l~~~d~~~~~g~~~~~l~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~l~~~d~~ 489 (953)
++..+-. +-....++||. ..+.-.+.+..++.+++.+.|-|+|..++..+.+.+ -++|-+..+
T Consensus 199 ~ntFvSg-------------~cD~~aklWD~--R~~~c~qtF~ghesDINsv~ffP~G~afatGSDD~t--cRlyDlRaD 261 (343)
T KOG0286|consen 199 GNTFVSG-------------GCDKSAKLWDV--RSGQCVQTFEGHESDINSVRFFPSGDAFATGSDDAT--CRLYDLRAD 261 (343)
T ss_pred CCeEEec-------------ccccceeeeec--cCcceeEeecccccccceEEEccCCCeeeecCCCce--eEEEeecCC
Confidence 7754332 22345678886 344445567888999999999999998888766554 378777655
Q ss_pred CCCCCcEEeecCCCccccCCCCCCCeEeccCCCEEEEEeeeccCCCcEEEEecCCCCCCCCCCeEEEEECCCCceEEEec
Q 002209 490 SKDVAPRILFDRSSEDVYSDPGSPMMRRTSTGTYVIAKIKKENDEGTYILLNGNGATPEGNIPFLDLFDINTGSKERIWE 569 (953)
Q Consensus 490 ~~~~~~~~~~~~~~~~~~~~~~~p~~~~SpDG~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~d~~~~~~~~l~~ 569 (953)
. ...++..... .. +--.+.||..|+.|+....+ ....+||.-.++..-+..
T Consensus 262 ~----~~a~ys~~~~-~~---gitSv~FS~SGRlLfagy~d---------------------~~c~vWDtlk~e~vg~L~ 312 (343)
T KOG0286|consen 262 Q----ELAVYSHDSI-IC---GITSVAFSKSGRLLFAGYDD---------------------FTCNVWDTLKGERVGVLA 312 (343)
T ss_pred c----EEeeeccCcc-cC---CceeEEEcccccEEEeeecC---------------------CceeEeeccccceEEEee
Confidence 4 2333332211 11 11127899999888776532 238899976665554433
Q ss_pred c
Q 002209 570 S 570 (953)
Q Consensus 570 ~ 570 (953)
+
T Consensus 313 G 313 (343)
T KOG0286|consen 313 G 313 (343)
T ss_pred c
Confidence 3
No 150
>KOG0263 consensus Transcription initiation factor TFIID, subunit TAF5 (also component of histone acetyltransferase SAGA) [Transcription]
Probab=99.19 E-value=3.5e-10 Score=125.81 Aligned_cols=207 Identities=14% Similarity=0.152 Sum_probs=138.7
Q ss_pred CCceeeeecCCCCCcccceEeccCCCeEEEEEeeccccCCCCcceEEEEECCCCceeecccCCCccccccccceEEecCC
Q 002209 176 LGQEIEIQGFPDGAKLNFVTWSQDGKHLAFSIRIDAEDSSSSKLRVWVADVDTGKARPLFQSPDIYLNAIFDNFVWVNNS 255 (953)
Q Consensus 176 ~~~~~~l~~~~~~~~~~~~~wSPDG~~laf~~~~~~~~~~~~~~~l~~~d~~~g~~~~lt~~~~~~~~~~~~~~~wspDg 255 (953)
.+..+.+.++. +.+...+||||.+.|+-++ ++....||-++ +-....+..++ +.++..+.|+|-|
T Consensus 441 ~~~~~~L~GH~--GPVyg~sFsPd~rfLlScS-------ED~svRLWsl~--t~s~~V~y~GH----~~PVwdV~F~P~G 505 (707)
T KOG0263|consen 441 SGTSRTLYGHS--GPVYGCSFSPDRRFLLSCS-------EDSSVRLWSLD--TWSCLVIYKGH----LAPVWDVQFAPRG 505 (707)
T ss_pred CceeEEeecCC--Cceeeeeecccccceeecc-------CCcceeeeecc--cceeEEEecCC----CcceeeEEecCCc
Confidence 34556676543 5789999999999999865 33345555544 54444333333 3336788899998
Q ss_pred eEEEEEecCCCCCCCCCCCCCCCCceeecCCCccccchhhhhhcCCcchhhhhhhhccceEEEEEcCCceeEeCCC-Ccc
Q 002209 256 TLLVCTIPLLRGDPPKKPLVPLGPKMQSNEKRDIIQVRTFQDLLKDEYDEDLFDYYATTQLVLVSLDGTVKEIGPP-AVY 334 (953)
Q Consensus 256 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~l~~~~~~g~~~~l~~~-~~~ 334 (953)
-+++.. ..| .+..||..|-+...+.+... ..+
T Consensus 506 yYFata----------------------------------------s~D-------~tArLWs~d~~~PlRifaghlsDV 538 (707)
T KOG0263|consen 506 YYFATA----------------------------------------SHD-------QTARLWSTDHNKPLRIFAGHLSDV 538 (707)
T ss_pred eEEEec----------------------------------------CCC-------ceeeeeecccCCchhhhccccccc
Confidence 766644 112 34456665544444444444 777
Q ss_pred cccccCCCCcEEEEEEecCCccccccCCCCCcceEEEeccCceE-EEeccCCCcccCCccccccccCccceeeccCCCCc
Q 002209 335 TSLDPSPDEKYILISSIHRPYSFIVPCGRFPRQVGVWTTDGIFV-RELCDLPLAEDIPIAFNSVRKGMRSINWRSDKPST 413 (953)
Q Consensus 335 ~~~~~SpDG~~l~~~~~~~~~~~~~~~~~~~~~i~~~d~~g~~~-~~l~~~~~~~~~p~~~~~~~~~~~~~~wspDg~~i 413 (953)
..+.|.|++.+++-.+.+. .+.+||+..+.. |..+.+. ..+..++|||+|+.|
T Consensus 539 ~cv~FHPNs~Y~aTGSsD~-------------tVRlWDv~~G~~VRiF~GH~-------------~~V~al~~Sp~Gr~L 592 (707)
T KOG0263|consen 539 DCVSFHPNSNYVATGSSDR-------------TVRLWDVSTGNSVRIFTGHK-------------GPVTALAFSPCGRYL 592 (707)
T ss_pred ceEEECCcccccccCCCCc-------------eEEEEEcCCCcEEEEecCCC-------------CceEEEEEcCCCceE
Confidence 7899999999998777554 899999985554 4443332 334679999999988
Q ss_pred eEEEEeccCCCcccccccCCeEEEEecCCCCCCCceEEeecccccCCeeeccCCceEEEEEecccCceEEEEEc
Q 002209 414 LYWAETQDGGDAKVEVTPRDIIYTQQAEPVQGEGPEILHKLDLRYGGISWCDDSLALVYESWYKTRRTRTWVIS 487 (953)
Q Consensus 414 ~~~~~~~~~~~~~~~~~~~~~l~~~d~~~~~g~~~~~l~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~l~~~d 487 (953)
+-. +..+.|.+||+ ..|.....+..+.+.+.++.||.||..|+..+.+.+. +||-+.
T Consensus 593 aSg-------------~ed~~I~iWDl--~~~~~v~~l~~Ht~ti~SlsFS~dg~vLasgg~DnsV--~lWD~~ 649 (707)
T KOG0263|consen 593 ASG-------------DEDGLIKIWDL--ANGSLVKQLKGHTGTIYSLSFSRDGNVLASGGADNSV--RLWDLT 649 (707)
T ss_pred eec-------------ccCCcEEEEEc--CCCcchhhhhcccCceeEEEEecCCCEEEecCCCCeE--EEEEch
Confidence 766 55678999997 3334444556667788899999999999887655533 677443
No 151
>KOG0305 consensus Anaphase promoting complex, Cdc20, Cdh1, and Ama1 subunits [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.19 E-value=3e-09 Score=116.44 Aligned_cols=250 Identities=16% Similarity=0.195 Sum_probs=157.5
Q ss_pred eceEEEEccCCCCCCceeeeecCCCCCcccceEeccCCCeEEEEEeeccccCCCCcceEEEEECCCCce-eecccCCCcc
Q 002209 163 TGIGIHQLFPDGKLGQEIEIQGFPDGAKLNFVTWSQDGKHLAFSIRIDAEDSSSSKLRVWVADVDTGKA-RPLFQSPDIY 241 (953)
Q Consensus 163 ~~i~i~~~~~~g~~~~~~~l~~~~~~~~~~~~~wSPDG~~laf~~~~~~~~~~~~~~~l~~~d~~~g~~-~~lt~~~~~~ 241 (953)
..+|+|+..+ +....|..+. ...+..+.|+++|++|+... ....+.++|....+. +.+.......
T Consensus 197 ~~vylW~~~s----~~v~~l~~~~-~~~vtSv~ws~~G~~LavG~---------~~g~v~iwD~~~~k~~~~~~~~h~~r 262 (484)
T KOG0305|consen 197 QSVYLWSASS----GSVTELCSFG-EELVTSVKWSPDGSHLAVGT---------SDGTVQIWDVKEQKKTRTLRGSHASR 262 (484)
T ss_pred ceEEEEecCC----CceEEeEecC-CCceEEEEECCCCCEEEEee---------cCCeEEEEehhhccccccccCCcCce
Confidence 4789999754 4555665442 35799999999999999944 466888888765433 3332212222
Q ss_pred ccccccceEEecCCeEEEEEecCCCCCCCCCCCCCCCCceeecCCCccccchhhhhhcCCcchhhhhhhhccceEEEEEc
Q 002209 242 LNAIFDNFVWVNNSTLLVCTIPLLRGDPPKKPLVPLGPKMQSNEKRDIIQVRTFQDLLKDEYDEDLFDYYATTQLVLVSL 321 (953)
Q Consensus 242 ~~~~~~~~~wspDg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~l~~~~~ 321 (953)
+..++|. +..+... . +...|...|+
T Consensus 263 ----vg~laW~--~~~lssG----------------------------------------s---------r~~~I~~~dv 287 (484)
T KOG0305|consen 263 ----VGSLAWN--SSVLSSG----------------------------------------S---------RDGKILNHDV 287 (484)
T ss_pred ----eEEEecc--CceEEEe----------------------------------------c---------CCCcEEEEEE
Confidence 7788997 3333322 0 2234445555
Q ss_pred -CC--ceeEeCCC-CcccccccCCCCcEEEEEEecCCccccccCCCCCcceEEEeccCceE-EEeccCCCcccCCccccc
Q 002209 322 -DG--TVKEIGPP-AVYTSLDPSPDEKYILISSIHRPYSFIVPCGRFPRQVGVWTTDGIFV-RELCDLPLAEDIPIAFNS 396 (953)
Q Consensus 322 -~g--~~~~l~~~-~~~~~~~~SpDG~~l~~~~~~~~~~~~~~~~~~~~~i~~~d~~g~~~-~~l~~~~~~~~~p~~~~~ 396 (953)
.. ....+... ..+-...|++||+++|-..+++ .+.+||....++ ..++.+
T Consensus 288 R~~~~~~~~~~~H~qeVCgLkws~d~~~lASGgnDN-------------~~~Iwd~~~~~p~~~~~~H------------ 342 (484)
T KOG0305|consen 288 RISQHVVSTLQGHRQEVCGLKWSPDGNQLASGGNDN-------------VVFIWDGLSPEPKFTFTEH------------ 342 (484)
T ss_pred ecchhhhhhhhcccceeeeeEECCCCCeeccCCCcc-------------ceEeccCCCccccEEEecc------------
Confidence 32 11112223 6677899999999999777554 899999854332 233333
Q ss_pred cccCccceeeccCCCCceEEEEeccCCCcccccccCCeEEEEecCCCCCCCceEEeecccccCCeeeccCCceEEEEEec
Q 002209 397 VRKGMRSINWRSDKPSTLYWAETQDGGDAKVEVTPRDIIYTQQAEPVQGEGPEILHKLDLRYGGISWCDDSLALVYESWY 476 (953)
Q Consensus 397 ~~~~~~~~~wspDg~~i~~~~~~~~~~~~~~~~~~~~~l~~~d~~~~~g~~~~~l~~~~~~~~~~~~SpDg~~l~~~~~~ 476 (953)
...+..++|+|=.+.|+.. |++ .....|..|+. .+++...-......+.++.||+..+.|+.+...
T Consensus 343 -~aAVKA~awcP~q~~lLAs-----GGG-----s~D~~i~fwn~---~~g~~i~~vdtgsQVcsL~Wsk~~kEi~sthG~ 408 (484)
T KOG0305|consen 343 -TAAVKALAWCPWQSGLLAT-----GGG-----SADRCIKFWNT---NTGARIDSVDTGSQVCSLIWSKKYKELLSTHGY 408 (484)
T ss_pred -ceeeeEeeeCCCccCceEE-----cCC-----CcccEEEEEEc---CCCcEecccccCCceeeEEEcCCCCEEEEecCC
Confidence 2456789999988887766 221 33557888985 444444444555668889999999999988755
Q ss_pred ccCceEEEEEcCCCCCCCcEEeecCCCccccCCCCCCCeEeccCCCEEEEEeee
Q 002209 477 KTRRTRTWVISPGSKDVAPRILFDRSSEDVYSDPGSPMMRRTSTGTYVIAKIKK 530 (953)
Q Consensus 477 ~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~SpDG~~l~~~~~~ 530 (953)
......||.+..-. ....+. .+..-+.. +++||||+.|+....+
T Consensus 409 s~n~i~lw~~ps~~---~~~~l~-gH~~RVl~------la~SPdg~~i~t~a~D 452 (484)
T KOG0305|consen 409 SENQITLWKYPSMK---LVAELL-GHTSRVLY------LALSPDGETIVTGAAD 452 (484)
T ss_pred CCCcEEEEeccccc---eeeeec-CCcceeEE------EEECCCCCEEEEeccc
Confidence 54456788876422 122222 22222222 7899999999887743
No 152
>KOG0279 consensus G protein beta subunit-like protein [Signal transduction mechanisms]
Probab=99.17 E-value=1.1e-08 Score=100.27 Aligned_cols=278 Identities=9% Similarity=0.050 Sum_probs=165.3
Q ss_pred cccceEeccCCCeEEEEEeeccccCCCCcceEEEEECCC-----CceeecccCCCccccccccceEEecCCeEEEEEecC
Q 002209 190 KLNFVTWSQDGKHLAFSIRIDAEDSSSSKLRVWVADVDT-----GKARPLFQSPDIYLNAIFDNFVWVNNSTLLVCTIPL 264 (953)
Q Consensus 190 ~~~~~~wSPDG~~laf~~~~~~~~~~~~~~~l~~~d~~~-----g~~~~lt~~~~~~~~~~~~~~~wspDg~~l~~~~~~ 264 (953)
.+...+..+++..+++.+.++ ..+.++++.+ |.+.+...+... .+..+..++||+..+..
T Consensus 17 ~Vt~la~~~~~~~~l~sasrD--------k~ii~W~L~~dd~~~G~~~r~~~GHsH----~v~dv~~s~dg~~alS~--- 81 (315)
T KOG0279|consen 17 WVTALAIKIKNSDILVSASRD--------KTIIVWKLTSDDIKYGVPVRRLTGHSH----FVSDVVLSSDGNFALSA--- 81 (315)
T ss_pred eEEEEEeecCCCceEEEcccc--------eEEEEEEeccCccccCceeeeeeccce----EecceEEccCCceEEec---
Confidence 566677777777777765432 2344444332 444333332222 27789999999887744
Q ss_pred CCCCCCCCCCCCCCCceeecCCCccccchhhhhhcCCcchhhhhhhhccceEEEEEc-CCceeE-eCCC-CcccccccCC
Q 002209 265 LRGDPPKKPLVPLGPKMQSNEKRDIIQVRTFQDLLKDEYDEDLFDYYATTQLVLVSL-DGTVKE-IGPP-AVYTSLDPSP 341 (953)
Q Consensus 265 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~l~~~~~-~g~~~~-l~~~-~~~~~~~~Sp 341 (953)
. -...+.+.|+ +|+.++ +..+ ..+.+++|||
T Consensus 82 -------------------------------------s---------wD~~lrlWDl~~g~~t~~f~GH~~dVlsva~s~ 115 (315)
T KOG0279|consen 82 -------------------------------------S---------WDGTLRLWDLATGESTRRFVGHTKDVLSVAFST 115 (315)
T ss_pred -------------------------------------c---------ccceEEEEEecCCcEEEEEEecCCceEEEEecC
Confidence 1 2245667788 775544 4444 7889999999
Q ss_pred CCcEEEEEEecCCccccccCCCCCcceEEEeccCceEEEeccCCCcccCCccccccccCccceeeccCCCCceEEEEecc
Q 002209 342 DEKYILISSIHRPYSFIVPCGRFPRQVGVWTTDGIFVRELCDLPLAEDIPIAFNSVRKGMRSINWRSDKPSTLYWAETQD 421 (953)
Q Consensus 342 DG~~l~~~~~~~~~~~~~~~~~~~~~i~~~d~~g~~~~~l~~~~~~~~~p~~~~~~~~~~~~~~wspDg~~i~~~~~~~~ 421 (953)
|.+.|+..+.++ .|-+|++-|.....+..... +..+.-+.|+|+....++..
T Consensus 116 dn~qivSGSrDk-------------Tiklwnt~g~ck~t~~~~~~-----------~~WVscvrfsP~~~~p~Ivs---- 167 (315)
T KOG0279|consen 116 DNRQIVSGSRDK-------------TIKLWNTLGVCKYTIHEDSH-----------REWVSCVRFSPNESNPIIVS---- 167 (315)
T ss_pred CCceeecCCCcc-------------eeeeeeecccEEEEEecCCC-----------cCcEEEEEEcCCCCCcEEEE----
Confidence 999999887554 89999998877666665321 23445689999864333331
Q ss_pred CCCcccccccCCeEEEEecCCCCCCCce-EEeecccccCCeeeccCCceEEEEEecccCceEEEEEcCCCCCCCcEEeec
Q 002209 422 GGDAKVEVTPRDIIYTQQAEPVQGEGPE-ILHKLDLRYGGISWCDDSLALVYESWYKTRRTRTWVISPGSKDVAPRILFD 500 (953)
Q Consensus 422 ~~~~~~~~~~~~~l~~~d~~~~~g~~~~-~l~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~l~~~d~~~~~~~~~~~~~ 500 (953)
.+.+..+-+||+ .+-+.+ .+..+.+.++.+++||||...++...+ + .++.+|++.+ +.+..
T Consensus 168 -------~s~DktvKvWnl---~~~~l~~~~~gh~~~v~t~~vSpDGslcasGgkd--g--~~~LwdL~~~----k~lys 229 (315)
T KOG0279|consen 168 -------ASWDKTVKVWNL---RNCQLRTTFIGHSGYVNTVTVSPDGSLCASGGKD--G--EAMLWDLNEG----KNLYS 229 (315)
T ss_pred -------ccCCceEEEEcc---CCcchhhccccccccEEEEEECCCCCEEecCCCC--c--eEEEEEccCC----ceeEe
Confidence 134557889986 433332 234566677889999999988875332 2 5666666654 12322
Q ss_pred C-CCccccCCCCCCCeEeccCCCEEEEEeeeccCCCcEEEEecCCCCCCCCCCeEEEEECCCCceEEEeccCcccceeee
Q 002209 501 R-SSEDVYSDPGSPMMRRTSTGTYVIAKIKKENDEGTYILLNGNGATPEGNIPFLDLFDINTGSKERIWESDKEKYYETT 579 (953)
Q Consensus 501 ~-~~~~~~~~~~~p~~~~SpDG~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~d~~~~~~~~l~~~~~~~~~~~~ 579 (953)
. ....+.+ +.|||.--+|..... +.+.+||++++....-...+...+ +.
T Consensus 230 l~a~~~v~s------l~fspnrywL~~at~----------------------~sIkIwdl~~~~~v~~l~~d~~g~--s~ 279 (315)
T KOG0279|consen 230 LEAFDIVNS------LCFSPNRYWLCAATA----------------------TSIKIWDLESKAVVEELKLDGIGP--SS 279 (315)
T ss_pred ccCCCeEee------EEecCCceeEeeccC----------------------CceEEEeccchhhhhhcccccccc--cc
Confidence 2 2222222 778988766655441 138899998876543333332100 00
Q ss_pred EeeccCCccccccccCCEEEEEEec
Q 002209 580 VALMSDQTEGDLYLNQLKILTSKES 604 (953)
Q Consensus 580 ~~~~~~~~~~~~s~dg~~l~~~~~~ 604 (953)
..-...--..+||.||.+|+.-..+
T Consensus 280 ~~~~~~clslaws~dG~tLf~g~td 304 (315)
T KOG0279|consen 280 KAGDPICLSLAWSADGQTLFAGYTD 304 (315)
T ss_pred ccCCcEEEEEEEcCCCcEEEeeecC
Confidence 0000000125788999888755544
No 153
>PLN02211 methyl indole-3-acetate methyltransferase
Probab=99.16 E-value=1e-09 Score=116.69 Aligned_cols=195 Identities=10% Similarity=0.100 Sum_probs=113.0
Q ss_pred ccEEEEeCCCCCcCcCCCCcccCCCCCCCCccchHHHHHHHcCcEEEEcCCCCCCCCCChhhhh---hhHHHHHHHHHHH
Q 002209 670 LPCLFWSYPGEFKSKDAAGQVRGSPNEFPRIGSTSVLLWLARGFAILGGPTTPIIGEGDEEAND---RFVEQLVACAEAA 746 (953)
Q Consensus 670 ~P~vv~~hGg~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~G~~V~~~~~~~~~G~G~~~~~~---~~~~~~~~D~~~~ 746 (953)
.|.||++||.... ...| ......|.++||.|++ .+..|+|.+.... ........++.+.
T Consensus 18 ~p~vvliHG~~~~-----------~~~w----~~~~~~L~~~g~~vi~---~dl~g~G~s~~~~~~~~~~~~~~~~l~~~ 79 (273)
T PLN02211 18 PPHFVLIHGISGG-----------SWCW----YKIRCLMENSGYKVTC---IDLKSAGIDQSDADSVTTFDEYNKPLIDF 79 (273)
T ss_pred CCeEEEECCCCCC-----------cCcH----HHHHHHHHhCCCEEEE---ecccCCCCCCCCcccCCCHHHHHHHHHHH
Confidence 5889999995211 0111 1234456778999999 4556777653221 2334444444444
Q ss_pred HHHHHHcCCCCCCcEEEEEeChHHHHHHHHHHhCCCcccEEEEcccCCCC-CCC-------C--------------cCcc
Q 002209 747 VEEVVRRGVAHPSKIAVGGHSYGAFMTANLLAHAPHLFCCGIARSGAYNR-TLT-------P--------------FGFQ 804 (953)
Q Consensus 747 ~~~l~~~~~~d~~~i~l~G~S~GG~~a~~~a~~~p~~~~a~v~~~~~~d~-~~~-------~--------------~~~~ 804 (953)
++ +.. ..+++.|+||||||.++..++.++|++++++|.+++.... ... . +...
T Consensus 80 i~---~l~--~~~~v~lvGhS~GG~v~~~~a~~~p~~v~~lv~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 154 (273)
T PLN02211 80 LS---SLP--ENEKVILVGHSAGGLSVTQAIHRFPKKICLAVYVAATMLKLGFQTDEDMKDGVPDLSEFGDVYELGFGLG 154 (273)
T ss_pred HH---hcC--CCCCEEEEEECchHHHHHHHHHhChhheeEEEEeccccCCCCCCHHHHHhccccchhhhccceeeeeccC
Confidence 43 332 1368999999999999999999999999999998663210 000 0 0000
Q ss_pred c----ccchh---------hh-hH----HHHHh------cCcc------cccCCC-CCcEEEEEeCCCCCCCCchHHHHH
Q 002209 805 N----EDRTL---------WE-AT----STYVE------MSPF------MSANKL-KKPILLVHGEEDNNSGTLTMQSDR 853 (953)
Q Consensus 805 ~----~~~~~---------~~-~~----~~~~~------~sp~------~~~~~i-~~P~Li~~G~~D~~v~~~~~~~~~ 853 (953)
. ..... +. .+ ..+.. ...+ ....++ ++|+++|.|++|..+| ++..+.
T Consensus 155 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vP~l~I~g~~D~~ip--~~~~~~ 232 (273)
T PLN02211 155 PDQPPTSAIIKKEFRRKILYQMSPQEDSTLAAMLLRPGPILALRSARFEEETGDIDKVPRVYIKTLHDHVVK--PEQQEA 232 (273)
T ss_pred CCCCCceeeeCHHHHHHHHhcCCCHHHHHHHHHhcCCcCccccccccccccccccCccceEEEEeCCCCCCC--HHHHHH
Confidence 0 00000 00 00 00000 0111 112344 6799999999999998 888888
Q ss_pred HHHHHHhCCCcEEEEEeCCCCccCCCcccHHHHHHHHHHHHH
Q 002209 854 FFNALKGHGALCRLVILPFESHGYAARESIMHVLWETDRWLQ 895 (953)
Q Consensus 854 ~~~~l~~~g~~~~~~~~~~~~H~~~~~~~~~~~~~~i~~fl~ 895 (953)
+.+.+.. .+++.++ +||... .+....+...|.+...
T Consensus 233 m~~~~~~----~~~~~l~-~gH~p~-ls~P~~~~~~i~~~a~ 268 (273)
T PLN02211 233 MIKRWPP----SQVYELE-SDHSPF-FSTPFLLFGLLIKAAA 268 (273)
T ss_pred HHHhCCc----cEEEEEC-CCCCcc-ccCHHHHHHHHHHHHH
Confidence 7776543 2677787 699753 4556666555555433
No 154
>KOG0265 consensus U5 snRNP-specific protein-like factor and related proteins [RNA processing and modification]
Probab=99.15 E-value=8.5e-09 Score=102.11 Aligned_cols=271 Identities=12% Similarity=0.075 Sum_probs=171.9
Q ss_pred CCCCceecCCCCEEEEEecCCCCCccccccccceeceEEecCCCCCCcceeeeeceEEEEccCCCCCCceeeeecCCCCC
Q 002209 110 PLPALSFSPQRDKILFLKRRALPPLEELARPEEKLAGLRIDGKCNTRSRMSFYTGIGIHQLFPDGKLGQEIEIQGFPDGA 189 (953)
Q Consensus 110 ~~~~~~~SPDG~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~i~~~~~~g~~~~~~~l~~~~~~~ 189 (953)
++....|+|||..+|....+ ..|.+|++-.|- .....++++. +
T Consensus 49 eI~~~~F~P~gs~~aSgG~D---------------------------------r~I~LWnv~gdc--eN~~~lkgHs--g 91 (338)
T KOG0265|consen 49 EIYTIKFHPDGSCFASGGSD---------------------------------RAIVLWNVYGDC--ENFWVLKGHS--G 91 (338)
T ss_pred eEEEEEECCCCCeEeecCCc---------------------------------ceEEEEeccccc--cceeeecccc--c
Confidence 46678899999999887765 378999984332 3344444432 4
Q ss_pred cccceEeccCCCeEEEEEeeccccCCCCcceEEEEECCCCceeecccCCCccccccccceEEecCCeEEEEEecCCCCCC
Q 002209 190 KLNFVTWSQDGKHLAFSIRIDAEDSSSSKLRVWVADVDTGKARPLFQSPDIYLNAIFDNFVWVNNSTLLVCTIPLLRGDP 269 (953)
Q Consensus 190 ~~~~~~wSPDG~~laf~~~~~~~~~~~~~~~l~~~d~~~g~~~~lt~~~~~~~~~~~~~~~wspDg~~l~~~~~~~~~~~ 269 (953)
.+..+.|.+||.+|+-+.. ...|+.+|+++|+..+-....... +..+.-+.-|..++.+.
T Consensus 92 AVM~l~~~~d~s~i~S~gt---------Dk~v~~wD~~tG~~~rk~k~h~~~----vNs~~p~rrg~~lv~Sg------- 151 (338)
T KOG0265|consen 92 AVMELHGMRDGSHILSCGT---------DKTVRGWDAETGKRIRKHKGHTSF----VNSLDPSRRGPQLVCSG------- 151 (338)
T ss_pred eeEeeeeccCCCEEEEecC---------CceEEEEecccceeeehhccccce----eeecCccccCCeEEEec-------
Confidence 7899999999999988653 678999999999876544433332 44444444455555541
Q ss_pred CCCCCCCCCCceeecCCCccccchhhhhhcCCcchhhhhhhhccceEEEEEc-CC-ceeEeCCCCcccccccCCCCcEEE
Q 002209 270 PKKPLVPLGPKMQSNEKRDIIQVRTFQDLLKDEYDEDLFDYYATTQLVLVSL-DG-TVKEIGPPAVYTSLDPSPDEKYIL 347 (953)
Q Consensus 270 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~l~~~~~-~g-~~~~l~~~~~~~~~~~SpDG~~l~ 347 (953)
+ ...++-++|+ .. ..+.+.+....+++.|.-++..+.
T Consensus 152 --------------------------------s---------dD~t~kl~D~R~k~~~~t~~~kyqltAv~f~d~s~qv~ 190 (338)
T KOG0265|consen 152 --------------------------------S---------DDGTLKLWDIRKKEAIKTFENKYQLTAVGFKDTSDQVI 190 (338)
T ss_pred --------------------------------C---------CCceEEEEeecccchhhccccceeEEEEEeccccccee
Confidence 1 1235556676 44 344444447788899999998887
Q ss_pred EEEecCCccccccCCCCCcceEEEeccCceEEEeccCCCcccCCccccccccCccceeeccCCCCceEEEEeccCCCccc
Q 002209 348 ISSIHRPYSFIVPCGRFPRQVGVWTTDGIFVRELCDLPLAEDIPIAFNSVRKGMRSINWRSDKPSTLYWAETQDGGDAKV 427 (953)
Q Consensus 348 ~~~~~~~~~~~~~~~~~~~~i~~~d~~g~~~~~l~~~~~~~~~p~~~~~~~~~~~~~~wspDg~~i~~~~~~~~~~~~~~ 427 (953)
....+ ++|.+||+..++...+... ...-+..+..||+|..+.--
T Consensus 191 sggId-------------n~ikvWd~r~~d~~~~lsG------------h~DtIt~lsls~~gs~llsn----------- 234 (338)
T KOG0265|consen 191 SGGID-------------NDIKVWDLRKNDGLYTLSG------------HADTITGLSLSRYGSFLLSN----------- 234 (338)
T ss_pred ecccc-------------CceeeeccccCcceEEeec------------ccCceeeEEeccCCCccccc-----------
Confidence 66544 3899999975554443331 22334678899999865432
Q ss_pred ccccCCeEEEEecCCCCCCCc-eEE-eeccc----ccCCeeeccCCceEEEEEecccCceEEEEEcCCCCCCCcEEeecC
Q 002209 428 EVTPRDIIYTQQAEPVQGEGP-EIL-HKLDL----RYGGISWCDDSLALVYESWYKTRRTRTWVISPGSKDVAPRILFDR 501 (953)
Q Consensus 428 ~~~~~~~l~~~d~~~~~g~~~-~~l-~~~~~----~~~~~~~SpDg~~l~~~~~~~~~~~~l~~~d~~~~~~~~~~~~~~ 501 (953)
+-...+.+||..|...++. ..+ ..... ..-..+|||+++.+.+.+.+. .+|++|..+. ........
T Consensus 235 --sMd~tvrvwd~rp~~p~~R~v~if~g~~hnfeknlL~cswsp~~~~i~ags~dr----~vyvwd~~~r--~~lyklpG 306 (338)
T KOG0265|consen 235 --SMDNTVRVWDVRPFAPSQRCVKIFQGHIHNFEKNLLKCSWSPNGTKITAGSADR----FVYVWDTTSR--RILYKLPG 306 (338)
T ss_pred --cccceEEEEEecccCCCCceEEEeecchhhhhhhcceeeccCCCCccccccccc----eEEEeecccc--cEEEEcCC
Confidence 3355788888766665554 223 22222 223479999999988876443 5788886652 22223333
Q ss_pred CCccccCCCCCCCeEeccCCCEEEEEe
Q 002209 502 SSEDVYSDPGSPMMRRTSTGTYVIAKI 528 (953)
Q Consensus 502 ~~~~~~~~~~~p~~~~SpDG~~l~~~~ 528 (953)
....+.. +.|.|....|....
T Consensus 307 h~gsvn~------~~Fhp~e~iils~~ 327 (338)
T KOG0265|consen 307 HYGSVNE------VDFHPTEPIILSCS 327 (338)
T ss_pred cceeEEE------eeecCCCcEEEEec
Confidence 3333333 67888887776655
No 155
>KOG1407 consensus WD40 repeat protein [Function unknown]
Probab=99.15 E-value=7.8e-09 Score=100.31 Aligned_cols=272 Identities=8% Similarity=0.053 Sum_probs=159.3
Q ss_pred CCCCCCceecCCCCEEEEEecCCCCCccccccccceeceEEecCCCCCCcceeeeeceEEEEccCCCCCCceeeeecCCC
Q 002209 108 APPLPALSFSPQRDKILFLKRRALPPLEELARPEEKLAGLRIDGKCNTRSRMSFYTGIGIHQLFPDGKLGQEIEIQGFPD 187 (953)
Q Consensus 108 ~~~~~~~~~SPDG~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~i~~~~~~g~~~~~~~l~~~~~ 187 (953)
...+..+.|.-||.+||..+.+ ..+.+|++..+ ...+.+..-..
T Consensus 20 ~~~v~Sv~wn~~g~~lasgs~d---------------------------------ktv~v~n~e~~---r~~~~~~~~gh 63 (313)
T KOG1407|consen 20 VQKVHSVAWNCDGTKLASGSFD---------------------------------KTVSVWNLERD---RFRKELVYRGH 63 (313)
T ss_pred hhcceEEEEcccCceeeecccC---------------------------------CceEEEEecch---hhhhhhcccCC
Confidence 3457789999999999988775 24467777321 11122221122
Q ss_pred CCcccceEeccCCCeEEEEEeeccccCCCCcceEEEEECCCCceeecccCCCccccccccceEEecCCeEEEEEecCCCC
Q 002209 188 GAKLNFVTWSQDGKHLAFSIRIDAEDSSSSKLRVWVADVDTGKARPLFQSPDIYLNAIFDNFVWVNNSTLLVCTIPLLRG 267 (953)
Q Consensus 188 ~~~~~~~~wSPDG~~laf~~~~~~~~~~~~~~~l~~~d~~~g~~~~lt~~~~~~~~~~~~~~~wspDg~~l~~~~~~~~~ 267 (953)
+..+....|+|-..-++++.. +...|.++|...+++...+....+ -....|+|||+.+++..
T Consensus 64 ~~svdql~w~~~~~d~~atas--------~dk~ir~wd~r~~k~~~~i~~~~e-----ni~i~wsp~g~~~~~~~----- 125 (313)
T KOG1407|consen 64 TDSVDQLCWDPKHPDLFATAS--------GDKTIRIWDIRSGKCTARIETKGE-----NINITWSPDGEYIAVGN----- 125 (313)
T ss_pred CcchhhheeCCCCCcceEEec--------CCceEEEEEeccCcEEEEeeccCc-----ceEEEEcCCCCEEEEec-----
Confidence 236788899986655655543 456788888888887655543332 22678999999999771
Q ss_pred CCCCCCCCCCCCceeecCCCccccchhhhhhcCCcchhhhhhhhccceEEEEEc-CCceeEeCCC-CcccccccCCCCcE
Q 002209 268 DPPKKPLVPLGPKMQSNEKRDIIQVRTFQDLLKDEYDEDLFDYYATTQLVLVSL-DGTVKEIGPP-AVYTSLDPSPDEKY 345 (953)
Q Consensus 268 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~l~~~~~-~g~~~~l~~~-~~~~~~~~SpDG~~ 345 (953)
....|..+|. +.++..-.+. ..+....|+-++.
T Consensus 126 --------------------------------------------kdD~it~id~r~~~~~~~~~~~~e~ne~~w~~~nd- 160 (313)
T KOG1407|consen 126 --------------------------------------------KDDRITFIDARTYKIVNEEQFKFEVNEISWNNSND- 160 (313)
T ss_pred --------------------------------------------CcccEEEEEecccceeehhcccceeeeeeecCCCC-
Confidence 1123445555 3332222222 4456778885554
Q ss_pred EEEEEecCCccccccCCCCCcceEEEeccCceEEEeccCCCcccCCccccccccCccceeeccCCCCceEEEEeccCCCc
Q 002209 346 ILISSIHRPYSFIVPCGRFPRQVGVWTTDGIFVRELCDLPLAEDIPIAFNSVRKGMRSINWRSDKPSTLYWAETQDGGDA 425 (953)
Q Consensus 346 l~~~~~~~~~~~~~~~~~~~~~i~~~d~~g~~~~~l~~~~~~~~~p~~~~~~~~~~~~~~wspDg~~i~~~~~~~~~~~~ 425 (953)
+.|..+.. +.|.+..-. ..+++.... .+..+..-+.|+|||++++..
T Consensus 161 ~Fflt~Gl------------G~v~ILsyp--sLkpv~si~----------AH~snCicI~f~p~GryfA~G--------- 207 (313)
T KOG1407|consen 161 LFFLTNGL------------GCVEILSYP--SLKPVQSIK----------AHPSNCICIEFDPDGRYFATG--------- 207 (313)
T ss_pred EEEEecCC------------ceEEEEecc--ccccccccc----------cCCcceEEEEECCCCceEeec---------
Confidence 55554221 133333222 122222211 111233458999999987765
Q ss_pred ccccccCCeEEEEecCCCCCCCceEEeecccccCCeeeccCCceEEEEEecccCceEEEEEcCCCCCCCcEEee-cCCCc
Q 002209 426 KVEVTPRDIIYTQQAEPVQGEGPEILHKLDLRYGGISWCDDSLALVYESWYKTRRTRTWVISPGSKDVAPRILF-DRSSE 504 (953)
Q Consensus 426 ~~~~~~~~~l~~~d~~~~~g~~~~~l~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~l~~~d~~~~~~~~~~~~-~~~~~ 504 (953)
+....+-+||+ .+---.+.++..++.+..++||.||+.|+.++++. -|=+.+..+|+ +...+. +.+
T Consensus 208 ----sADAlvSLWD~--~ELiC~R~isRldwpVRTlSFS~dg~~lASaSEDh----~IDIA~vetGd-~~~eI~~~~~-- 274 (313)
T KOG1407|consen 208 ----SADALVSLWDV--DELICERCISRLDWPVRTLSFSHDGRMLASASEDH----FIDIAEVETGD-RVWEIPCEGP-- 274 (313)
T ss_pred ----cccceeeccCh--hHhhhheeeccccCceEEEEeccCcceeeccCccc----eEEeEecccCC-eEEEeeccCC--
Confidence 34456678885 11112356788899999999999999999887543 23334444442 112221 111
Q ss_pred cccCCCCCCCeEeccCCCEEEEEeeec
Q 002209 505 DVYSDPGSPMMRRTSTGTYVIAKIKKE 531 (953)
Q Consensus 505 ~~~~~~~~p~~~~SpDG~~l~~~~~~~ 531 (953)
.+. ++|.|.-..|+|...+.
T Consensus 275 -t~t------VAWHPk~~LLAyA~ddk 294 (313)
T KOG1407|consen 275 -TFT------VAWHPKRPLLAYACDDK 294 (313)
T ss_pred -cee------EEecCCCceeeEEecCC
Confidence 122 88999999999998544
No 156
>KOG2055 consensus WD40 repeat protein [General function prediction only]
Probab=99.15 E-value=6.3e-10 Score=115.96 Aligned_cols=239 Identities=13% Similarity=0.151 Sum_probs=150.6
Q ss_pred CCCCceecCCCCEEEEEecCCCCCccccccccceeceEEecCCCCCCcceeeeeceEEEEccCCCCCCceeeeecCCCCC
Q 002209 110 PLPALSFSPQRDKILFLKRRALPPLEELARPEEKLAGLRIDGKCNTRSRMSFYTGIGIHQLFPDGKLGQEIEIQGFPDGA 189 (953)
Q Consensus 110 ~~~~~~~SPDG~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~i~~~~~~g~~~~~~~l~~~~~~~ 189 (953)
++....|+|+|+..+|++.+ . .-+|+||+.+ +...+..++-+.+ ..
T Consensus 259 Pi~~a~f~p~G~~~i~~s~r-------------------------r-------ky~ysyDle~-ak~~k~~~~~g~e-~~ 304 (514)
T KOG2055|consen 259 PIQKAEFAPNGHSVIFTSGR-------------------------R-------KYLYSYDLET-AKVTKLKPPYGVE-EK 304 (514)
T ss_pred ccceeeecCCCceEEEeccc-------------------------c-------eEEEEeeccc-cccccccCCCCcc-cc
Confidence 46677899999966666553 1 1368999954 2222222222222 12
Q ss_pred cccceEeccCCCeEEEEEeeccccCCCCcceEEEEECCCCceeecccCCCccccccccceEEecCCeEEEEEecCCCCCC
Q 002209 190 KLNFVTWSQDGKHLAFSIRIDAEDSSSSKLRVWVADVDTGKARPLFQSPDIYLNAIFDNFVWVNNSTLLVCTIPLLRGDP 269 (953)
Q Consensus 190 ~~~~~~wSPDG~~laf~~~~~~~~~~~~~~~l~~~d~~~g~~~~lt~~~~~~~~~~~~~~~wspDg~~l~~~~~~~~~~~ 269 (953)
.......||||+.||+... ...|+++...+++.. +... .++.+..+.|+.||+.|+.+
T Consensus 305 ~~e~FeVShd~~fia~~G~---------~G~I~lLhakT~eli--~s~K---ieG~v~~~~fsSdsk~l~~~-------- 362 (514)
T KOG2055|consen 305 SMERFEVSHDSNFIAIAGN---------NGHIHLLHAKTKELI--TSFK---IEGVVSDFTFSSDSKELLAS-------- 362 (514)
T ss_pred hhheeEecCCCCeEEEccc---------CceEEeehhhhhhhh--heee---eccEEeeEEEecCCcEEEEE--------
Confidence 5677788999999999553 679999998887753 2222 23337899999999988866
Q ss_pred CCCCCCCCCCceeecCCCccccchhhhhhcCCcchhhhhhhhccceEEEEEc-CCc-eeEeCCC--CcccccccCCCCcE
Q 002209 270 PKKPLVPLGPKMQSNEKRDIIQVRTFQDLLKDEYDEDLFDYYATTQLVLVSL-DGT-VKEIGPP--AVYTSLDPSPDEKY 345 (953)
Q Consensus 270 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~l~~~~~-~g~-~~~l~~~--~~~~~~~~SpDG~~ 345 (953)
.+++++|++|+ ... ..+.... -.-++++.|++|.+
T Consensus 363 -----------------------------------------~~~GeV~v~nl~~~~~~~rf~D~G~v~gts~~~S~ng~y 401 (514)
T KOG2055|consen 363 -----------------------------------------GGTGEVYVWNLRQNSCLHRFVDDGSVHGTSLCISLNGSY 401 (514)
T ss_pred -----------------------------------------cCCceEEEEecCCcceEEEEeecCccceeeeeecCCCce
Confidence 15578999999 443 3333333 33367899999999
Q ss_pred EEEEEecCCccccccCCCCCcceEEEecc----CceEEEeccCCCcccCCccccccccCccceeeccCCCCceEEEEecc
Q 002209 346 ILISSIHRPYSFIVPCGRFPRQVGVWTTD----GIFVRELCDLPLAEDIPIAFNSVRKGMRSINWRSDKPSTLYWAETQD 421 (953)
Q Consensus 346 l~~~~~~~~~~~~~~~~~~~~~i~~~d~~----g~~~~~l~~~~~~~~~p~~~~~~~~~~~~~~wspDg~~i~~~~~~~~ 421 (953)
+|..+..+ -|-+||.+ ++.++++.... ....++.+++|+||++.++.....
T Consensus 402 lA~GS~~G-------------iVNIYd~~s~~~s~~PkPik~~d----------NLtt~Itsl~Fn~d~qiLAiaS~~-- 456 (514)
T KOG2055|consen 402 LATGSDSG-------------IVNIYDGNSCFASTNPKPIKTVD----------NLTTAITSLQFNHDAQILAIASRV-- 456 (514)
T ss_pred EEeccCcc-------------eEEEeccchhhccCCCCchhhhh----------hhheeeeeeeeCcchhhhhhhhhc--
Confidence 99887432 34455543 33444444321 223566789999999987776322
Q ss_pred CCCcccccccCCeEEEEecCCCCCCCceEEe------ecccccCCeeeccCCceEEEEEecccCceEEEEE
Q 002209 422 GGDAKVEVTPRDIIYTQQAEPVQGEGPEILH------KLDLRYGGISWCDDSLALVYESWYKTRRTRTWVI 486 (953)
Q Consensus 422 ~~~~~~~~~~~~~l~~~d~~~~~g~~~~~l~------~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~l~~~ 486 (953)
..+.+.++.+ |.- .... ..-+.+..++|||.|.++++....+ +..||.+
T Consensus 457 ---------~knalrLVHv-PS~----TVFsNfP~~n~~vg~vtc~aFSP~sG~lAvGNe~g--rv~l~kL 511 (514)
T KOG2055|consen 457 ---------KKNALRLVHV-PSC----TVFSNFPTSNTKVGHVTCMAFSPNSGYLAVGNEAG--RVHLFKL 511 (514)
T ss_pred ---------cccceEEEec-cce----eeeccCCCCCCcccceEEEEecCCCceEEeecCCC--ceeeEee
Confidence 2445666665 211 1111 1123456789999999999875433 2467765
No 157
>PF12740 Chlorophyllase2: Chlorophyllase enzyme; InterPro: IPR010821 This family consists of several chlorophyllase proteins (3.1.1.14 from EC). Chlorophyllase (Chlase) is the first enzyme involved in chlorophyll degradation and catalyses the hydrolysis of the ester bond to yield chlorophyllide and phytol [, , ].; GO: 0047746 chlorophyllase activity, 0015996 chlorophyll catabolic process
Probab=99.15 E-value=2.4e-09 Score=108.21 Aligned_cols=178 Identities=16% Similarity=0.142 Sum_probs=114.6
Q ss_pred EEEEEcCCCCCCCCCCCccEEEEeCCCCCcCcCCCCcccCCCCCCCCccchHHHHHHHcCcEEEEcCCCCCCCCCChhhh
Q 002209 653 SATLYLPPGYDPSKDGPLPCLFWSYPGEFKSKDAAGQVRGSPNEFPRIGSTSVLLWLARGFAILGGPTTPIIGEGDEEAN 732 (953)
Q Consensus 653 ~~~l~~P~~~~~~~~~~~P~vv~~hGg~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~G~~V~~~~~~~~~G~G~~~~~ 732 (953)
...++.|.. .+.||+||+.||.. + ...++......+|+.||+|+.++.+...+.+.
T Consensus 5 ~l~v~~P~~-----~g~yPVv~f~~G~~---------~------~~s~Ys~ll~hvAShGyIVV~~d~~~~~~~~~---- 60 (259)
T PF12740_consen 5 PLLVYYPSS-----AGTYPVVLFLHGFL---------L------INSWYSQLLEHVASHGYIVVAPDLYSIGGPDD---- 60 (259)
T ss_pred CeEEEecCC-----CCCcCEEEEeCCcC---------C------CHHHHHHHHHHHHhCceEEEEecccccCCCCc----
Confidence 345777865 45699999999941 1 11123345667899999999988654433221
Q ss_pred hhhHHHHHHHHHHHHHHHHHc-----C---CCCCCcEEEEEeChHHHHHHHHHHhC-----CCcccEEEEcccCCCCCCC
Q 002209 733 DRFVEQLVACAEAAVEEVVRR-----G---VAHPSKIAVGGHSYGAFMTANLLAHA-----PHLFCCGIARSGAYNRTLT 799 (953)
Q Consensus 733 ~~~~~~~~~D~~~~~~~l~~~-----~---~~d~~~i~l~G~S~GG~~a~~~a~~~-----p~~~~a~v~~~~~~d~~~~ 799 (953)
...+.++.+.++|+.+. + .+|-++++|+|||-||-++..++..+ +.+|++++.+.|+-.....
T Consensus 61 ----~~~~~~~~~vi~Wl~~~L~~~l~~~v~~D~s~l~l~GHSrGGk~Af~~al~~~~~~~~~~~~ali~lDPVdG~~~~ 136 (259)
T PF12740_consen 61 ----TDEVASAAEVIDWLAKGLESKLPLGVKPDFSKLALAGHSRGGKVAFAMALGNASSSLDLRFSALILLDPVDGMSKG 136 (259)
T ss_pred ----chhHHHHHHHHHHHHhcchhhccccccccccceEEeeeCCCCHHHHHHHhhhcccccccceeEEEEeccccccccc
Confidence 35567777888887652 1 25888999999999999999999886 4589999999987421111
Q ss_pred CcCcccccchhhhhHHHHHhcCcccccCCCCCcEEEEEeCCCC--------CC-CCchHH-HHHHHHHHHhCCCcEEEEE
Q 002209 800 PFGFQNEDRTLWEATSTYVEMSPFMSANKLKKPILLVHGEEDN--------NS-GTLTMQ-SDRFFNALKGHGALCRLVI 869 (953)
Q Consensus 800 ~~~~~~~~~~~~~~~~~~~~~sp~~~~~~i~~P~Li~~G~~D~--------~v-~~~~~~-~~~~~~~l~~~g~~~~~~~ 869 (953)
.... +.. ..+.| ..-+...|+||+-..... .| | ... -.+||++++.. .-..+
T Consensus 137 ~~~~----------P~v-~~~~p--~s~~~~~P~lviGtGLg~~~~~~~~~~CaP--~g~n~~~Ff~~~~~p---~~~~v 198 (259)
T PF12740_consen 137 SQTE----------PPV-LTYTP--QSFDFSMPALVIGTGLGGEPRNPLFPPCAP--AGVNYREFFDECKPP---SWHFV 198 (259)
T ss_pred cCCC----------Ccc-ccCcc--cccCCCCCeEEEecccCcccccccCCCCCC--CCCCHHHHHHhcCCC---EEEEE
Confidence 0000 000 00111 112245899999766663 23 2 222 47888888544 56667
Q ss_pred eCCCCcc
Q 002209 870 LPFESHG 876 (953)
Q Consensus 870 ~~~~~H~ 876 (953)
..+.||.
T Consensus 199 ~~~~GH~ 205 (259)
T PF12740_consen 199 AKDYGHM 205 (259)
T ss_pred eCCCCch
Confidence 7899996
No 158
>KOG4627 consensus Kynurenine formamidase [Amino acid transport and metabolism]
Probab=99.13 E-value=4e-10 Score=105.40 Aligned_cols=202 Identities=16% Similarity=0.156 Sum_probs=133.5
Q ss_pred CceEEEEEEcCCCcEEEEEEEcCCCCCCCCCCCccEEEEeCCCCCcCcCCCCcccCCCCCCCCccchHHHHHHHcCcEEE
Q 002209 637 LQKELIKYQRKDGVQLSATLYLPPGYDPSKDGPLPCLFWSYPGEFKSKDAAGQVRGSPNEFPRIGSTSVLLWLARGFAIL 716 (953)
Q Consensus 637 ~~~~~~~~~~~dg~~~~~~l~~P~~~~~~~~~~~P~vv~~hGg~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~G~~V~ 716 (953)
...+.+.|-. .| .-...+|.|.+ ..|++|++|||+|..++... + -..+.....+||+|+
T Consensus 43 ~r~e~l~Yg~-~g-~q~VDIwg~~~-------~~klfIfIHGGYW~~g~rk~-------c-----lsiv~~a~~~gY~va 101 (270)
T KOG4627|consen 43 IRVEHLRYGE-GG-RQLVDIWGSTN-------QAKLFIFIHGGYWQEGDRKM-------C-----LSIVGPAVRRGYRVA 101 (270)
T ss_pred cchhccccCC-CC-ceEEEEecCCC-------CccEEEEEecchhhcCchhc-------c-----cchhhhhhhcCeEEE
Confidence 3455666642 33 23345666644 26899999999877554221 1 123445678999999
Q ss_pred EcCCCCCCCCCChhhhhhhHHHHHHHHHHHHHHHHHcCCCCCCcEEEEEeChHHHHHHHHHHhC-CCcccEEEEcccCCC
Q 002209 717 GGPTTPIIGEGDEEANDRFVEQLVACAEAAVEEVVRRGVAHPSKIAVGGHSYGAFMTANLLAHA-PHLFCCGIARSGAYN 795 (953)
Q Consensus 717 ~~~~~~~~G~G~~~~~~~~~~~~~~D~~~~~~~l~~~~~~d~~~i~l~G~S~GG~~a~~~a~~~-p~~~~a~v~~~~~~d 795 (953)
...| +... ......+.+.++...++|+.+... ..+.+.+.|||.|+.+++.+.++. ..++.++++.+|+++
T Consensus 102 svgY------~l~~-q~htL~qt~~~~~~gv~filk~~~-n~k~l~~gGHSaGAHLa~qav~R~r~prI~gl~l~~GvY~ 173 (270)
T KOG4627|consen 102 SVGY------NLCP-QVHTLEQTMTQFTHGVNFILKYTE-NTKVLTFGGHSAGAHLAAQAVMRQRSPRIWGLILLCGVYD 173 (270)
T ss_pred Eecc------CcCc-ccccHHHHHHHHHHHHHHHHHhcc-cceeEEEcccchHHHHHHHHHHHhcCchHHHHHHHhhHhh
Confidence 8444 2221 123467888999999999987643 356799999999999999988853 358999999999987
Q ss_pred CCC-CCcCcccccchhhhhHHHHHhcCc-ccccCCCCCcEEEEEeCCCCCCCCchHHHHHHHHHHHhCCCcEEEEEeCCC
Q 002209 796 RTL-TPFGFQNEDRTLWEATSTYVEMSP-FMSANKLKKPILLVHGEEDNNSGTLTMQSDRFFNALKGHGALCRLVILPFE 873 (953)
Q Consensus 796 ~~~-~~~~~~~~~~~~~~~~~~~~~~sp-~~~~~~i~~P~Li~~G~~D~~v~~~~~~~~~~~~~l~~~g~~~~~~~~~~~ 873 (953)
..- ....+....+. ..+..+..|+ +.....++.|+||+.+.+|.- .+++|.+.+...+++. ++..|++.
T Consensus 174 l~EL~~te~g~dlgL---t~~~ae~~Scdl~~~~~v~~~ilVv~~~~esp--klieQnrdf~~q~~~a----~~~~f~n~ 244 (270)
T KOG4627|consen 174 LRELSNTESGNDLGL---TERNAESVSCDLWEYTDVTVWILVVAAEHESP--KLIEQNRDFADQLRKA----SFTLFKNY 244 (270)
T ss_pred HHHHhCCccccccCc---ccchhhhcCccHHHhcCceeeeeEeeecccCc--HHHHhhhhHHHHhhhc----ceeecCCc
Confidence 321 11111010000 1111122232 233456789999999999976 5599999999998875 78889999
Q ss_pred Ccc
Q 002209 874 SHG 876 (953)
Q Consensus 874 ~H~ 876 (953)
+|.
T Consensus 245 ~hy 247 (270)
T KOG4627|consen 245 DHY 247 (270)
T ss_pred chh
Confidence 995
No 159
>KOG4409 consensus Predicted hydrolase/acyltransferase (alpha/beta hydrolase superfamily) [General function prediction only]
Probab=99.12 E-value=2.1e-09 Score=110.45 Aligned_cols=178 Identities=15% Similarity=0.082 Sum_probs=106.1
Q ss_pred HHHHcCcEEEEcCCCCCCCCCChhhhhhh--HHHHHHHHHHHHHHHHHcCCCCCCcEEEEEeChHHHHHHHHHHhCCCcc
Q 002209 707 LWLARGFAILGGPTTPIIGEGDEEANDRF--VEQLVACAEAAVEEVVRRGVAHPSKIAVGGHSYGAFMTANLLAHAPHLF 784 (953)
Q Consensus 707 ~la~~G~~V~~~~~~~~~G~G~~~~~~~~--~~~~~~D~~~~~~~l~~~~~~d~~~i~l~G~S~GG~~a~~~a~~~p~~~ 784 (953)
.|++ ...|.+ +|..|+|+|..+.-. ......-.++.++..+..-. -+++.|+|||+||+++..+|.++|++|
T Consensus 112 ~La~-~~~vya---iDllG~G~SSRP~F~~d~~~~e~~fvesiE~WR~~~~--L~KmilvGHSfGGYLaa~YAlKyPerV 185 (365)
T KOG4409|consen 112 DLAK-IRNVYA---IDLLGFGRSSRPKFSIDPTTAEKEFVESIEQWRKKMG--LEKMILVGHSFGGYLAAKYALKYPERV 185 (365)
T ss_pred hhhh-cCceEE---ecccCCCCCCCCCCCCCcccchHHHHHHHHHHHHHcC--CcceeEeeccchHHHHHHHHHhChHhh
Confidence 3444 788888 677888888543210 11111233344443333222 358999999999999999999999999
Q ss_pred cEEEEcccCCCCC---CCC-------cCc-------cccc--------chh-------h----------hhHHHH-H---
Q 002209 785 CCGIARSGAYNRT---LTP-------FGF-------QNED--------RTL-------W----------EATSTY-V--- 818 (953)
Q Consensus 785 ~a~v~~~~~~d~~---~~~-------~~~-------~~~~--------~~~-------~----------~~~~~~-~--- 818 (953)
+-+|+++|.--.. ..+ ..+ .... +.. | ...+.+ .
T Consensus 186 ~kLiLvsP~Gf~~~~~~~~~~~~~~~~w~~~~~~~~~~~nPl~~LR~~Gp~Gp~Lv~~~~~d~~~k~~~~~~ed~l~~Yi 265 (365)
T KOG4409|consen 186 EKLILVSPWGFPEKPDSEPEFTKPPPEWYKALFLVATNFNPLALLRLMGPLGPKLVSRLRPDRFRKFPSLIEEDFLHEYI 265 (365)
T ss_pred ceEEEecccccccCCCcchhhcCCChHHHhhhhhhhhcCCHHHHHHhccccchHHHhhhhHHHHHhccccchhHHHHHHH
Confidence 9999998852110 000 000 0000 000 0 000000 0
Q ss_pred -----------------------hcCc-ccccCCCC--CcEEEEEeCCCCCCCCchHHHHHHHHHHHhCCCcEEEEEeCC
Q 002209 819 -----------------------EMSP-FMSANKLK--KPILLVHGEEDNNSGTLTMQSDRFFNALKGHGALCRLVILPF 872 (953)
Q Consensus 819 -----------------------~~sp-~~~~~~i~--~P~Li~~G~~D~~v~~~~~~~~~~~~~l~~~g~~~~~~~~~~ 872 (953)
...| ++.+..++ +|+++|+|+.|..- ...+.++...+. ...++.+++|+
T Consensus 266 Y~~n~~~psgE~~fk~l~~~~g~Ar~Pm~~r~~~l~~~~pv~fiyG~~dWmD---~~~g~~~~~~~~--~~~~~~~~v~~ 340 (365)
T KOG4409|consen 266 YHCNAQNPSGETAFKNLFEPGGWARRPMIQRLRELKKDVPVTFIYGDRDWMD---KNAGLEVTKSLM--KEYVEIIIVPG 340 (365)
T ss_pred HHhcCCCCcHHHHHHHHHhccchhhhhHHHHHHhhccCCCEEEEecCccccc---chhHHHHHHHhh--cccceEEEecC
Confidence 0011 22333444 89999999999864 456677777663 34579999999
Q ss_pred CCccCCCcccHHHHHHHHHHHHHH
Q 002209 873 ESHGYAARESIMHVLWETDRWLQK 896 (953)
Q Consensus 873 ~~H~~~~~~~~~~~~~~i~~fl~~ 896 (953)
+||... ..+.+.+.+.+..+++.
T Consensus 341 aGHhvy-lDnp~~Fn~~v~~~~~~ 363 (365)
T KOG4409|consen 341 AGHHVY-LDNPEFFNQIVLEECDK 363 (365)
T ss_pred CCceee-cCCHHHHHHHHHHHHhc
Confidence 999874 45666777777777654
No 160
>PLN00181 protein SPA1-RELATED; Provisional
Probab=99.12 E-value=1.5e-08 Score=124.79 Aligned_cols=231 Identities=13% Similarity=0.045 Sum_probs=136.3
Q ss_pred CCCceecCCCCEEEEEecCCCCCccccccccceeceEEecCCCCCCcceeeeeceEEEEccC---CCCCCceeeeecCCC
Q 002209 111 LPALSFSPQRDKILFLKRRALPPLEELARPEEKLAGLRIDGKCNTRSRMSFYTGIGIHQLFP---DGKLGQEIEIQGFPD 187 (953)
Q Consensus 111 ~~~~~~SPDG~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~i~~~~~---~g~~~~~~~l~~~~~ 187 (953)
+..++|||||++||....+ +.|.||++.. ++... ...+..+..
T Consensus 486 V~~i~fs~dg~~latgg~D---------------------------------~~I~iwd~~~~~~~~~~~-~~~~~~~~~ 531 (793)
T PLN00181 486 VCAIGFDRDGEFFATAGVN---------------------------------KKIKIFECESIIKDGRDI-HYPVVELAS 531 (793)
T ss_pred EEEEEECCCCCEEEEEeCC---------------------------------CEEEEEECCccccccccc-ccceEEecc
Confidence 5567899999988887764 3678888732 11000 001111222
Q ss_pred CCcccceEeccC-CCeEEEEEeeccccCCCCcceEEEEECCCCceeecccCCCccccccccceEEec-CCeEEEEEecCC
Q 002209 188 GAKLNFVTWSQD-GKHLAFSIRIDAEDSSSSKLRVWVADVDTGKARPLFQSPDIYLNAIFDNFVWVN-NSTLLVCTIPLL 265 (953)
Q Consensus 188 ~~~~~~~~wSPD-G~~laf~~~~~~~~~~~~~~~l~~~d~~~g~~~~lt~~~~~~~~~~~~~~~wsp-Dg~~l~~~~~~~ 265 (953)
...+....|+|. ++.|+... ....|.+||+.+++.......... .+..++|+| |+..|+...
T Consensus 532 ~~~v~~l~~~~~~~~~las~~---------~Dg~v~lWd~~~~~~~~~~~~H~~----~V~~l~~~p~~~~~L~Sgs--- 595 (793)
T PLN00181 532 RSKLSGICWNSYIKSQVASSN---------FEGVVQVWDVARSQLVTEMKEHEK----RVWSIDYSSADPTLLASGS--- 595 (793)
T ss_pred cCceeeEEeccCCCCEEEEEe---------CCCeEEEEECCCCeEEEEecCCCC----CEEEEEEcCCCCCEEEEEc---
Confidence 235778899875 56666533 356788889887765433322222 277899996 777777551
Q ss_pred CCCCCCCCCCCCCCceeecCCCccccchhhhhhcCCcchhhhhhhhccceEEEEEc-CCce-eEeCCCCccccccc-CCC
Q 002209 266 RGDPPKKPLVPLGPKMQSNEKRDIIQVRTFQDLLKDEYDEDLFDYYATTQLVLVSL-DGTV-KEIGPPAVYTSLDP-SPD 342 (953)
Q Consensus 266 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~l~~~~~-~g~~-~~l~~~~~~~~~~~-SpD 342 (953)
..+.+.++|+ ++.. ..+.....+..+.| +++
T Consensus 596 ----------------------------------------------~Dg~v~iWd~~~~~~~~~~~~~~~v~~v~~~~~~ 629 (793)
T PLN00181 596 ----------------------------------------------DDGSVKLWSINQGVSIGTIKTKANICCVQFPSES 629 (793)
T ss_pred ----------------------------------------------CCCEEEEEECCCCcEEEEEecCCCeEEEEEeCCC
Confidence 2245666677 5533 22322245666777 568
Q ss_pred CcEEEEEEecCCccccccCCCCCcceEEEeccCce--EEEeccCCCcccCCccccccccCccceeeccCCCCceEEEEec
Q 002209 343 EKYILISSIHRPYSFIVPCGRFPRQVGVWTTDGIF--VRELCDLPLAEDIPIAFNSVRKGMRSINWRSDKPSTLYWAETQ 420 (953)
Q Consensus 343 G~~l~~~~~~~~~~~~~~~~~~~~~i~~~d~~g~~--~~~l~~~~~~~~~p~~~~~~~~~~~~~~wspDg~~i~~~~~~~ 420 (953)
|+.|++.+.+. .|.+||+.... ...+..+ ...+..+.|+ |+..++-.
T Consensus 630 g~~latgs~dg-------------~I~iwD~~~~~~~~~~~~~h-------------~~~V~~v~f~-~~~~lvs~---- 678 (793)
T PLN00181 630 GRSLAFGSADH-------------KVYYYDLRNPKLPLCTMIGH-------------SKTVSYVRFV-DSSTLVSS---- 678 (793)
T ss_pred CCEEEEEeCCC-------------eEEEEECCCCCccceEecCC-------------CCCEEEEEEe-CCCEEEEE----
Confidence 99998887443 89999997432 1222221 1234567886 66654433
Q ss_pred cCCCcccccccCCeEEEEecCCC----CCCCceEEeecccccCCeeeccCCceEEEEEecc
Q 002209 421 DGGDAKVEVTPRDIIYTQQAEPV----QGEGPEILHKLDLRYGGISWCDDSLALVYESWYK 477 (953)
Q Consensus 421 ~~~~~~~~~~~~~~l~~~d~~~~----~g~~~~~l~~~~~~~~~~~~SpDg~~l~~~~~~~ 477 (953)
+..+.|.+||+... .......+..+...+..+.|+++|++|+..+.++
T Consensus 679 ---------s~D~~ikiWd~~~~~~~~~~~~l~~~~gh~~~i~~v~~s~~~~~lasgs~D~ 730 (793)
T PLN00181 679 ---------STDNTLKLWDLSMSISGINETPLHSFMGHTNVKNFVGLSVSDGYIATGSETN 730 (793)
T ss_pred ---------ECCCEEEEEeCCCCccccCCcceEEEcCCCCCeeEEEEcCCCCEEEEEeCCC
Confidence 34557888886111 0112233444555566789999999888877554
No 161
>KOG1838 consensus Alpha/beta hydrolase [General function prediction only]
Probab=99.11 E-value=6.5e-09 Score=110.71 Aligned_cols=238 Identities=14% Similarity=0.084 Sum_probs=146.3
Q ss_pred eEEEEEEcCCCcEEEEEEEcCCCCCC-CCCCCccEEEEeCCCCCcCcCCCCcccCCCCCCCCccchHHHHHHHcCcEEEE
Q 002209 639 KELIKYQRKDGVQLSATLYLPPGYDP-SKDGPLPCLFWSYPGEFKSKDAAGQVRGSPNEFPRIGSTSVLLWLARGFAILG 717 (953)
Q Consensus 639 ~~~~~~~~~dg~~~~~~l~~P~~~~~-~~~~~~P~vv~~hGg~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~G~~V~~ 717 (953)
-++.-++..||..+..-++.++.-.. .+.+..|+||++||-...+. ..+-...+....++||.|+.
T Consensus 93 y~Reii~~~DGG~~~lDW~~~~~~~~~~~~~~~P~vvilpGltg~S~-------------~~YVr~lv~~a~~~G~r~VV 159 (409)
T KOG1838|consen 93 YTREIIKTSDGGTVTLDWVENPDSRCRTDDGTDPIVVILPGLTGGSH-------------ESYVRHLVHEAQRKGYRVVV 159 (409)
T ss_pred ceeEEEEeCCCCEEEEeeccCcccccCCCCCCCcEEEEecCCCCCCh-------------hHHHHHHHHHHHhCCcEEEE
Confidence 34455666799888888887654321 12235799999999432211 11112344455679999999
Q ss_pred cCCCCCCCCCChhh--hhhhHHHHHHHHHHHHHHHHHcCCCCCCcEEEEEeChHHHHHHHHHHhCCC--cccEEEEcccC
Q 002209 718 GPTTPIIGEGDEEA--NDRFVEQLVACAEAAVEEVVRRGVAHPSKIAVGGHSYGAFMTANLLAHAPH--LFCCGIARSGA 793 (953)
Q Consensus 718 ~~~~~~~G~G~~~~--~~~~~~~~~~D~~~~~~~l~~~~~~d~~~i~l~G~S~GG~~a~~~a~~~p~--~~~a~v~~~~~ 793 (953)
.+.+| .|.+.- +.-+-....+|+.++++++.++.. ..++..+|.||||.+.+.++++..+ .+.|+++++-.
T Consensus 160 fN~RG---~~g~~LtTpr~f~ag~t~Dl~~~v~~i~~~~P--~a~l~avG~S~Gg~iL~nYLGE~g~~~~l~~a~~v~~P 234 (409)
T KOG1838|consen 160 FNHRG---LGGSKLTTPRLFTAGWTEDLREVVNHIKKRYP--QAPLFAVGFSMGGNILTNYLGEEGDNTPLIAAVAVCNP 234 (409)
T ss_pred ECCCC---CCCCccCCCceeecCCHHHHHHHHHHHHHhCC--CCceEEEEecchHHHHHHHhhhccCCCCceeEEEEecc
Confidence 66654 444422 223334557899999999998853 3489999999999999999987543 25555555554
Q ss_pred CCCCC-----CCcCc--------------------------------ccccchh--------------hhhHHHHHhcCc
Q 002209 794 YNRTL-----TPFGF--------------------------------QNEDRTL--------------WEATSTYVEMSP 822 (953)
Q Consensus 794 ~d~~~-----~~~~~--------------------------------~~~~~~~--------------~~~~~~~~~~sp 822 (953)
+|... ....+ ....++. -.-.+.|.+.|+
T Consensus 235 wd~~~~~~~~~~~~~~~~y~~~l~~~l~~~~~~~r~~~~~~~vd~d~~~~~~SvreFD~~~t~~~~gf~~~deYY~~aSs 314 (409)
T KOG1838|consen 235 WDLLAASRSIETPLYRRFYNRALTLNLKRIVLRHRHTLFEDPVDFDVILKSRSVREFDEALTRPMFGFKSVDEYYKKASS 314 (409)
T ss_pred chhhhhhhHHhcccchHHHHHHHHHhHHHHHhhhhhhhhhccchhhhhhhcCcHHHHHhhhhhhhcCCCcHHHHHhhcch
Confidence 44210 00000 0000000 011356777899
Q ss_pred ccccCCCCCcEEEEEeCCCCCCCCchHHHHHHHHHHHhCCCcEEEEEeCCCCccCCCcc---cHHHHHHH-HHHHHHHhc
Q 002209 823 FMSANKLKKPILLVHGEEDNNSGTLTMQSDRFFNALKGHGALCRLVILPFESHGYAARE---SIMHVLWE-TDRWLQKYC 898 (953)
Q Consensus 823 ~~~~~~i~~P~Li~~G~~D~~v~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~H~~~~~~---~~~~~~~~-i~~fl~~~l 898 (953)
..++++|++|+|++++.+|+++| . .+.-. +..++ +..+-+++-..+||.-.-.. +...++++ +.+|+....
T Consensus 315 ~~~v~~I~VP~L~ina~DDPv~p--~-~~ip~-~~~~~-np~v~l~~T~~GGHlgfleg~~p~~~~w~~~~l~ef~~~~~ 389 (409)
T KOG1838|consen 315 SNYVDKIKVPLLCINAADDPVVP--E-EAIPI-DDIKS-NPNVLLVITSHGGHLGFLEGLWPSARTWMDKLLVEFLGNAI 389 (409)
T ss_pred hhhcccccccEEEEecCCCCCCC--c-ccCCH-HHHhc-CCcEEEEEeCCCceeeeeccCCCccchhHHHHHHHHHHHHH
Confidence 99999999999999999999997 3 33332 22333 33677777777899532111 33445555 777777654
Q ss_pred c
Q 002209 899 V 899 (953)
Q Consensus 899 ~ 899 (953)
.
T Consensus 390 ~ 390 (409)
T KOG1838|consen 390 F 390 (409)
T ss_pred h
Confidence 3
No 162
>KOG0273 consensus Beta-transducin family (WD-40 repeat) protein [Chromatin structure and dynamics]
Probab=99.11 E-value=2.3e-08 Score=104.82 Aligned_cols=268 Identities=15% Similarity=0.135 Sum_probs=166.6
Q ss_pred CCCcccceEeccCCCeEEEEEeeccccCCCCcceEEEEECCCCceeecccCCCccccccccceEEecCCeEEEEEecCCC
Q 002209 187 DGAKLNFVTWSQDGKHLAFSIRIDAEDSSSSKLRVWVADVDTGKARPLFQSPDIYLNAIFDNFVWVNNSTLLVCTIPLLR 266 (953)
Q Consensus 187 ~~~~~~~~~wSPDG~~laf~~~~~~~~~~~~~~~l~~~d~~~g~~~~lt~~~~~~~~~~~~~~~wspDg~~l~~~~~~~~ 266 (953)
....++.+.|+-||..||+.. ....+.+|+.+|+....+-.+... +-++.|..+|++|+...
T Consensus 234 ~nkdVT~L~Wn~~G~~LatG~---------~~G~~riw~~~G~l~~tl~~HkgP-----I~slKWnk~G~yilS~~---- 295 (524)
T KOG0273|consen 234 SNKDVTSLDWNNDGTLLATGS---------EDGEARIWNKDGNLISTLGQHKGP-----IFSLKWNKKGTYILSGG---- 295 (524)
T ss_pred ccCCcceEEecCCCCeEEEee---------cCcEEEEEecCchhhhhhhccCCc-----eEEEEEcCCCCEEEecc----
Confidence 335789999999999999944 466777888778776666444433 77999999999999651
Q ss_pred CCCCCCCCCCCCCceeecCCCccccchhhhhhcCCcchhhhhhhhccceEEEEEc-CCceeEeCCC--CcccccccCCCC
Q 002209 267 GDPPKKPLVPLGPKMQSNEKRDIIQVRTFQDLLKDEYDEDLFDYYATTQLVLVSL-DGTVKEIGPP--AVYTSLDPSPDE 343 (953)
Q Consensus 267 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~l~~~~~-~g~~~~l~~~--~~~~~~~~SpDG 343 (953)
....+.++|. +|+.++.... ...-.+.|--+-
T Consensus 296 ---------------------------------------------vD~ttilwd~~~g~~~q~f~~~s~~~lDVdW~~~~ 330 (524)
T KOG0273|consen 296 ---------------------------------------------VDGTTILWDAHTGTVKQQFEFHSAPALDVDWQSND 330 (524)
T ss_pred ---------------------------------------------CCccEEEEeccCceEEEeeeeccCCccceEEecCc
Confidence 1234556787 8876655443 222345665444
Q ss_pred cEEEEEEecCCccccccCCCCCcceEEEeccCceEE-EeccCCCcccCCccccccccCccceeeccCCCCceEEEEeccC
Q 002209 344 KYILISSIHRPYSFIVPCGRFPRQVGVWTTDGIFVR-ELCDLPLAEDIPIAFNSVRKGMRSINWRSDKPSTLYWAETQDG 422 (953)
Q Consensus 344 ~~l~~~~~~~~~~~~~~~~~~~~~i~~~d~~g~~~~-~l~~~~~~~~~p~~~~~~~~~~~~~~wspDg~~i~~~~~~~~~ 422 (953)
++. ..+. .+.|+++.++...+. .+..+ .+.+..+.|.|-|+.|+-.
T Consensus 331 ~F~-ts~t-------------d~~i~V~kv~~~~P~~t~~GH-------------~g~V~alk~n~tg~LLaS~------ 377 (524)
T KOG0273|consen 331 EFA-TSST-------------DGCIHVCKVGEDRPVKTFIGH-------------HGEVNALKWNPTGSLLASC------ 377 (524)
T ss_pred eEe-ecCC-------------CceEEEEEecCCCcceeeecc-------------cCceEEEEECCCCceEEEe------
Confidence 432 2221 236888887754332 23322 2344678999999866554
Q ss_pred CCcccccccCCeEEEEecCCCCCCCceEEeecccccCCeeeccCCc---------eEEEEEecccCceEEEEEcCCCCCC
Q 002209 423 GDAKVEVTPRDIIYTQQAEPVQGEGPEILHKLDLRYGGISWCDDSL---------ALVYESWYKTRRTRTWVISPGSKDV 493 (953)
Q Consensus 423 ~~~~~~~~~~~~l~~~d~~~~~g~~~~~l~~~~~~~~~~~~SpDg~---------~l~~~~~~~~~~~~l~~~d~~~~~~ 493 (953)
+.+..+-+|.. .++.....+..+...+..+.|||+|. .|+.++.+. -+..+|...+
T Consensus 378 -------SdD~TlkiWs~--~~~~~~~~l~~Hskei~t~~wsp~g~v~~n~~~~~~l~sas~ds----tV~lwdv~~g-- 442 (524)
T KOG0273|consen 378 -------SDDGTLKIWSM--GQSNSVHDLQAHSKEIYTIKWSPTGPVTSNPNMNLMLASASFDS----TVKLWDVESG-- 442 (524)
T ss_pred -------cCCCeeEeeec--CCCcchhhhhhhccceeeEeecCCCCccCCCcCCceEEEeecCC----eEEEEEccCC--
Confidence 33445666653 23333444555555566778888754 344444433 2334444443
Q ss_pred CcEEeecCCCccccCCCCCCCeEeccCCCEEEEEeeeccCCCcEEEEecCCCCCCCCCCeEEEEECCCCceEEEeccCcc
Q 002209 494 APRILFDRSSEDVYSDPGSPMMRRTSTGTYVIAKIKKENDEGTYILLNGNGATPEGNIPFLDLFDINTGSKERIWESDKE 573 (953)
Q Consensus 494 ~~~~~~~~~~~~~~~~~~~p~~~~SpDG~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~d~~~~~~~~l~~~~~~ 573 (953)
.+...+....+.+|. ++|||+|+++++...+. .+..|+..+++..+-..+.+.
T Consensus 443 v~i~~f~kH~~pVys------vafS~~g~ylAsGs~dg---------------------~V~iws~~~~~l~~s~~~~~~ 495 (524)
T KOG0273|consen 443 VPIHTLMKHQEPVYS------VAFSPNGRYLASGSLDG---------------------CVHIWSTKTGKLVKSYQGTGG 495 (524)
T ss_pred ceeEeeccCCCceEE------EEecCCCcEEEecCCCC---------------------eeEeccccchheeEeecCCCe
Confidence 444555566666777 89999999999987533 388999988887766555543
Q ss_pred cceeeeEeeccCCccccccccCCEEEEEEec
Q 002209 574 KYYETTVALMSDQTEGDLYLNQLKILTSKES 604 (953)
Q Consensus 574 ~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~ 604 (953)
.| +..|+.+|.++....+.
T Consensus 496 -If-----------el~Wn~~G~kl~~~~sd 514 (524)
T KOG0273|consen 496 -IF-----------ELCWNAAGDKLGACASD 514 (524)
T ss_pred -EE-----------EEEEcCCCCEEEEEecC
Confidence 11 13466777766655543
No 163
>PF08662 eIF2A: Eukaryotic translation initiation factor eIF2A; InterPro: IPR013979 This entry contains beta propellor domains found in eukaryotic translation initiation factors and TolB domain-containing proteins.
Probab=99.10 E-value=3.8e-09 Score=105.23 Aligned_cols=175 Identities=17% Similarity=0.189 Sum_probs=105.4
Q ss_pred CceecCCCCEEEEEecCCCCCccccccccceeceEEecCCCCCCcceeeeeceEEEEccCCCCCCceeeeecCCCCCccc
Q 002209 113 ALSFSPQRDKILFLKRRALPPLEELARPEEKLAGLRIDGKCNTRSRMSFYTGIGIHQLFPDGKLGQEIEIQGFPDGAKLN 192 (953)
Q Consensus 113 ~~~~SPDG~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~i~~~~~~g~~~~~~~l~~~~~~~~~~ 192 (953)
.+.|+|+|++|++.... +.+..+.. .....+|+.++.. + .....+. +.....+.
T Consensus 10 ~~~W~~~G~~l~~~~~~------------------~~~~~~ks---~~~~~~l~~~~~~--~--~~~~~i~-l~~~~~I~ 63 (194)
T PF08662_consen 10 KLHWQPSGDYLLVKVQT------------------RVDKSGKS---YYGEFELFYLNEK--N--IPVESIE-LKKEGPIH 63 (194)
T ss_pred EEEecccCCEEEEEEEE------------------eeccCcce---EEeeEEEEEEecC--C--Cccceee-ccCCCceE
Confidence 46799999999998762 01111111 1112355665542 2 2333332 33333589
Q ss_pred ceEeccCCCeEEEEEeeccccCCCCcceEEEEECCCCceeecccCCCccccccccceEEecCCeEEEEEecCCCCCCCCC
Q 002209 193 FVTWSQDGKHLAFSIRIDAEDSSSSKLRVWVADVDTGKARPLFQSPDIYLNAIFDNFVWVNNSTLLVCTIPLLRGDPPKK 272 (953)
Q Consensus 193 ~~~wSPDG~~laf~~~~~~~~~~~~~~~l~~~d~~~g~~~~lt~~~~~~~~~~~~~~~wspDg~~l~~~~~~~~~~~~~~ 272 (953)
..+|||+|+.+|.... .....+-++|+++.....+ +... ...+.|||+|+.|+++.-.
T Consensus 64 ~~~WsP~g~~favi~g-------~~~~~v~lyd~~~~~i~~~---~~~~----~n~i~wsP~G~~l~~~g~~-------- 121 (194)
T PF08662_consen 64 DVAWSPNGNEFAVIYG-------SMPAKVTLYDVKGKKIFSF---GTQP----RNTISWSPDGRFLVLAGFG-------- 121 (194)
T ss_pred EEEECcCCCEEEEEEc-------cCCcccEEEcCcccEeEee---cCCC----ceEEEECCCCCEEEEEEcc--------
Confidence 9999999999988652 1233677777764333333 3222 4578999999999987110
Q ss_pred CCCCCCCceeecCCCccccchhhhhhcCCcchhhhhhhhccceEEEEEc-CCceeEeCCCCcccccccCCCCcEEEEEEe
Q 002209 273 PLVPLGPKMQSNEKRDIIQVRTFQDLLKDEYDEDLFDYYATTQLVLVSL-DGTVKEIGPPAVYTSLDPSPDEKYILISSI 351 (953)
Q Consensus 273 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~l~~~~~-~g~~~~l~~~~~~~~~~~SpDG~~l~~~~~ 351 (953)
+ ..+.|..+|. +.+.-........+.++|||||++|+....
T Consensus 122 -------------------------------n-------~~G~l~~wd~~~~~~i~~~~~~~~t~~~WsPdGr~~~ta~t 163 (194)
T PF08662_consen 122 -------------------------------N-------LNGDLEFWDVRKKKKISTFEHSDATDVEWSPDGRYLATATT 163 (194)
T ss_pred -------------------------------C-------CCcEEEEEECCCCEEeeccccCcEEEEEEcCCCCEEEEEEe
Confidence 0 1245667777 444333233356778999999999998763
Q ss_pred cCCccccccCCCCCcceEEEeccCceEEE
Q 002209 352 HRPYSFIVPCGRFPRQVGVWTTDGIFVRE 380 (953)
Q Consensus 352 ~~~~~~~~~~~~~~~~i~~~d~~g~~~~~ 380 (953)
. |..+....+.+|+..|....+
T Consensus 164 ~-------~r~~~dng~~Iw~~~G~~l~~ 185 (194)
T PF08662_consen 164 S-------PRLRVDNGFKIWSFQGRLLYK 185 (194)
T ss_pred c-------cceeccccEEEEEecCeEeEe
Confidence 2 222334578889888776544
No 164
>KOG4497 consensus Uncharacterized conserved protein WDR8, contains WD repeats [General function prediction only]
Probab=99.10 E-value=6.2e-09 Score=103.98 Aligned_cols=140 Identities=18% Similarity=0.149 Sum_probs=91.9
Q ss_pred CceecCCCCEEEEEecCCCCCccccccccceeceEEecCCCCCCcceeeeeceEEEEccCCCCCCceeeeecCCCCCccc
Q 002209 113 ALSFSPQRDKILFLKRRALPPLEELARPEEKLAGLRIDGKCNTRSRMSFYTGIGIHQLFPDGKLGQEIEIQGFPDGAKLN 192 (953)
Q Consensus 113 ~~~~SPDG~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~i~~~~~~g~~~~~~~l~~~~~~~~~~ 192 (953)
...|||+|++||..++- .+.|+|..+ -+..++-..- ..+.
T Consensus 13 ~c~fSp~g~yiAs~~~y----------------------------------rlviRd~~t----lq~~qlf~cl--dki~ 52 (447)
T KOG4497|consen 13 FCSFSPCGNYIASLSRY----------------------------------RLVIRDSET----LQLHQLFLCL--DKIV 52 (447)
T ss_pred ceeECCCCCeeeeeeee----------------------------------EEEEeccch----hhHHHHHHHH--HHhh
Confidence 67899999999998862 567777643 3333321111 2578
Q ss_pred ceEeccCCCeEEEEEeeccccCCCCcceEEEEECCCCceeecccCCCccccccccceEEecCCeEEEEEecCCCCCCCCC
Q 002209 193 FVTWSQDGKHLAFSIRIDAEDSSSSKLRVWVADVDTGKARPLFQSPDIYLNAIFDNFVWVNNSTLLVCTIPLLRGDPPKK 272 (953)
Q Consensus 193 ~~~wSPDG~~laf~~~~~~~~~~~~~~~l~~~d~~~g~~~~lt~~~~~~~~~~~~~~~wspDg~~l~~~~~~~~~~~~~~ 272 (953)
..-|+.|.-+|+-... .+.-+.++++..-+-.--...+.. .+....|||||+.|..++
T Consensus 53 yieW~ads~~ilC~~y--------k~~~vqvwsl~Qpew~ckIdeg~a----gls~~~WSPdgrhiL~ts---------- 110 (447)
T KOG4497|consen 53 YIEWKADSCHILCVAY--------KDPKVQVWSLVQPEWYCKIDEGQA----GLSSISWSPDGRHILLTS---------- 110 (447)
T ss_pred heeeeccceeeeeeee--------ccceEEEEEeecceeEEEeccCCC----cceeeeECCCcceEeeee----------
Confidence 8999999999988653 234566666655443221121222 267889999999888651
Q ss_pred CCCCCCCceeecCCCccccchhhhhhcCCcchhhhhhhhccceEEEEEc-CCceeEeCCC-CcccccccCCCCcEEEEEE
Q 002209 273 PLVPLGPKMQSNEKRDIIQVRTFQDLLKDEYDEDLFDYYATTQLVLVSL-DGTVKEIGPP-AVYTSLDPSPDEKYILISS 350 (953)
Q Consensus 273 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~l~~~~~-~g~~~~l~~~-~~~~~~~~SpDG~~l~~~~ 350 (953)
+ ...+|.+..+ +.+...+.-+ .++..++|.|||++.+..+
T Consensus 111 -----------------------------e---------F~lriTVWSL~t~~~~~~~~pK~~~kg~~f~~dg~f~ai~s 152 (447)
T KOG4497|consen 111 -----------------------------E---------FDLRITVWSLNTQKGYLLPHPKTNVKGYAFHPDGQFCAILS 152 (447)
T ss_pred -----------------------------c---------ceeEEEEEEeccceeEEecccccCceeEEECCCCceeeeee
Confidence 1 2245666677 6666666555 6678899999999998887
Q ss_pred ec
Q 002209 351 IH 352 (953)
Q Consensus 351 ~~ 352 (953)
.+
T Consensus 153 Rr 154 (447)
T KOG4497|consen 153 RR 154 (447)
T ss_pred cc
Confidence 44
No 165
>KOG1454 consensus Predicted hydrolase/acyltransferase (alpha/beta hydrolase superfamily) [General function prediction only]
Probab=99.10 E-value=2e-09 Score=116.02 Aligned_cols=173 Identities=16% Similarity=0.163 Sum_probs=106.1
Q ss_pred CcEEEEcCCCCCCCCCCh-hhhhhhHHHHHHHHHHHHHHHHHcCCCCCCcEEEEEeChHHHHHHHHHHhCCCcccEEE--
Q 002209 712 GFAILGGPTTPIIGEGDE-EANDRFVEQLVACAEAAVEEVVRRGVAHPSKIAVGGHSYGAFMTANLLAHAPHLFCCGI-- 788 (953)
Q Consensus 712 G~~V~~~~~~~~~G~G~~-~~~~~~~~~~~~D~~~~~~~l~~~~~~d~~~i~l~G~S~GG~~a~~~a~~~p~~~~a~v-- 788 (953)
|+.|++ +|..|+|.+ ..+... .....+....+..+..... .+++.++|||+||.+++.+|+.+|+.++.++
T Consensus 86 ~~~v~a---iDl~G~g~~s~~~~~~-~y~~~~~v~~i~~~~~~~~--~~~~~lvghS~Gg~va~~~Aa~~P~~V~~lv~~ 159 (326)
T KOG1454|consen 86 GLRVLA---IDLPGHGYSSPLPRGP-LYTLRELVELIRRFVKEVF--VEPVSLVGHSLGGIVALKAAAYYPETVDSLVLL 159 (326)
T ss_pred ceEEEE---EecCCCCcCCCCCCCC-ceehhHHHHHHHHHHHhhc--CcceEEEEeCcHHHHHHHHHHhCcccccceeee
Confidence 699999 555666632 222211 1223333333433333322 2469999999999999999999999999999
Q ss_pred -EcccCCCCCCC--------------------CcC-------ccc-----------ccchhhhhHHHH------------
Q 002209 789 -ARSGAYNRTLT--------------------PFG-------FQN-----------EDRTLWEATSTY------------ 817 (953)
Q Consensus 789 -~~~~~~d~~~~--------------------~~~-------~~~-----------~~~~~~~~~~~~------------ 817 (953)
...+.+...-. +.. +.. .....++....+
T Consensus 160 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 239 (326)
T KOG1454|consen 160 DLLGPPVYSTPKGIKGLRRLLDKFLSALELLIPLSLTEPVRLVSEGLLRCLKVVYTDPSRLLEKLLHLLSRPVKEHFHRD 239 (326)
T ss_pred cccccccccCCcchhHHHHhhhhhccHhhhcCccccccchhheeHhhhcceeeeccccccchhhhhhheecccccchhhh
Confidence 54443221000 000 000 000000000000
Q ss_pred --H---------hcCcccccCCCC-CcEEEEEeCCCCCCCCchHHHHHHHHHHHhCCCcEEEEEeCCCCccCCCcccHHH
Q 002209 818 --V---------EMSPFMSANKLK-KPILLVHGEEDNNSGTLTMQSDRFFNALKGHGALCRLVILPFESHGYAARESIMH 885 (953)
Q Consensus 818 --~---------~~sp~~~~~~i~-~P~Li~~G~~D~~v~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~H~~~~~~~~~~ 885 (953)
. +..+...+.++. +|+||++|+.|..+| .+.+..+.+.+ ..+++++++++||... .+..+.
T Consensus 240 ~~~~~~~~~~~~~~~~~~~~~~i~~~pvlii~G~~D~~~p--~~~~~~~~~~~----pn~~~~~I~~~gH~~h-~e~Pe~ 312 (326)
T KOG1454|consen 240 ARLSLFLELLGFDENLLSLIKKIWKCPVLIIWGDKDQIVP--LELAEELKKKL----PNAELVEIPGAGHLPH-LERPEE 312 (326)
T ss_pred heeeEEEeccCccchHHHhhccccCCceEEEEcCcCCccC--HHHHHHHHhhC----CCceEEEeCCCCcccc-cCCHHH
Confidence 0 012233456666 999999999999998 77666665555 4479999999999874 577889
Q ss_pred HHHHHHHHHHHh
Q 002209 886 VLWETDRWLQKY 897 (953)
Q Consensus 886 ~~~~i~~fl~~~ 897 (953)
+...|..|+.+.
T Consensus 313 ~~~~i~~Fi~~~ 324 (326)
T KOG1454|consen 313 VAALLRSFIARL 324 (326)
T ss_pred HHHHHHHHHHHh
Confidence 999999999875
No 166
>KOG2314 consensus Translation initiation factor 3, subunit b (eIF-3b) [Translation, ribosomal structure and biogenesis]
Probab=99.10 E-value=9.8e-08 Score=102.02 Aligned_cols=350 Identities=13% Similarity=0.168 Sum_probs=192.8
Q ss_pred chhHHHhhcCCCCCCceecCCCCEEEEEecCCCCCccccccccceeceEEecCCCCCCcceeeeeceEEEEccCCCCCCc
Q 002209 99 PPEIREIVDAPPLPALSFSPQRDKILFLKRRALPPLEELARPEEKLAGLRIDGKCNTRSRMSFYTGIGIHQLFPDGKLGQ 178 (953)
Q Consensus 99 ~~~~~~~~~~~~~~~~~~SPDG~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~i~~~~~~g~~~~ 178 (953)
|..+.+--.+ .-..+.|||-|.+|+..-.+ +|.+|-- .+...
T Consensus 202 p~~ie~RenW-Tetyv~wSP~GTYL~t~Hk~----------------------------------GI~lWGG---~~f~r 243 (698)
T KOG2314|consen 202 PSLIEERENW-TETYVRWSPKGTYLVTFHKQ----------------------------------GIALWGG---ESFDR 243 (698)
T ss_pred hhhhhhhhcc-eeeeEEecCCceEEEEEecc----------------------------------ceeeecC---ccHHH
Confidence 4445554444 23578999999998876653 4556531 11122
Q ss_pred eeeeecCCCCCcccceEeccCCCeEEEEEeecc--ccCCCCcceEEEEECCCCceeecccCCCccccccccceEEecCCe
Q 002209 179 EIEIQGFPDGAKLNFVTWSQDGKHLAFSIRIDA--EDSSSSKLRVWVADVDTGKARPLFQSPDIYLNAIFDNFVWVNNST 256 (953)
Q Consensus 179 ~~~l~~~~~~~~~~~~~wSPDG~~laf~~~~~~--~~~~~~~~~l~~~d~~~g~~~~lt~~~~~~~~~~~~~~~wspDg~ 256 (953)
.++ +.+ ..+....|||.-++|+.-+-... ..++++..+|.+||+.+|...+-........ ..-..+.||.|++
T Consensus 244 ~~R---F~H-p~Vq~idfSP~EkYLVT~s~~p~~~~~~d~e~~~l~IWDI~tG~lkrsF~~~~~~~-~~WP~frWS~DdK 318 (698)
T KOG2314|consen 244 IQR---FYH-PGVQFIDFSPNEKYLVTYSPEPIIVEEDDNEGQQLIIWDIATGLLKRSFPVIKSPY-LKWPIFRWSHDDK 318 (698)
T ss_pred HHh---ccC-CCceeeecCCccceEEEecCCccccCcccCCCceEEEEEccccchhcceeccCCCc-cccceEEeccCCc
Confidence 223 332 25788999999999987654332 2335567899999999998765443321110 0023688999999
Q ss_pred EEEEEecCCCCCCCCCCCCCCCCceeecCCCccccchhhhhhcCCcchhhhhhhhccceEEEEEcCCceeEeCCCCcccc
Q 002209 257 LLVCTIPLLRGDPPKKPLVPLGPKMQSNEKRDIIQVRTFQDLLKDEYDEDLFDYYATTQLVLVSLDGTVKEIGPPAVYTS 336 (953)
Q Consensus 257 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~l~~~~~~g~~~~l~~~~~~~~ 336 (953)
.++..... .+.+|.+..+.++ +++.-.+ .++..
T Consensus 319 y~Arm~~~------------------------------------------sisIyEtpsf~ll--d~Kslki---~gIr~ 351 (698)
T KOG2314|consen 319 YFARMTGN------------------------------------------SISIYETPSFMLL--DKKSLKI---SGIRD 351 (698)
T ss_pred eeEEeccc------------------------------------------eEEEEecCceeee--cccccCC---ccccC
Confidence 99976110 0001111222222 3333223 57889
Q ss_pred cccCCCCcEEEEEEecCCccccccCCCCCcceEEEeccC-ceEEEeccCCCcccCCccccccccCccceeeccCCCCceE
Q 002209 337 LDPSPDEKYILISSIHRPYSFIVPCGRFPRQVGVWTTDG-IFVRELCDLPLAEDIPIAFNSVRKGMRSINWRSDKPSTLY 415 (953)
Q Consensus 337 ~~~SpDG~~l~~~~~~~~~~~~~~~~~~~~~i~~~d~~g-~~~~~l~~~~~~~~~p~~~~~~~~~~~~~~wspDg~~i~~ 415 (953)
+.|||-+..|||-.... ...+..+.++.+-. .+++...-.... .-.+.|-.+|..|++
T Consensus 352 FswsP~~~llAYwtpe~--------~~~parvtL~evPs~~~iRt~nlfnVs-------------DckLhWQk~gdyLcv 410 (698)
T KOG2314|consen 352 FSWSPTSNLLAYWTPET--------NNIPARVTLMEVPSKREIRTKNLFNVS-------------DCKLHWQKSGDYLCV 410 (698)
T ss_pred cccCCCcceEEEEcccc--------cCCcceEEEEecCccceeeeccceeee-------------ccEEEeccCCcEEEE
Confidence 99999999999987332 11234566666653 333322211111 135889999999999
Q ss_pred EEEeccCCCcccccccCC--eEEEEecCCCCCCCceEEeecccccCCeeeccCCceEEEEE-ecccCceEEEEEcCCCCC
Q 002209 416 WAETQDGGDAKVEVTPRD--IIYTQQAEPVQGEGPEILHKLDLRYGGISWCDDSLALVYES-WYKTRRTRTWVISPGSKD 492 (953)
Q Consensus 416 ~~~~~~~~~~~~~~~~~~--~l~~~d~~~~~g~~~~~l~~~~~~~~~~~~SpDg~~l~~~~-~~~~~~~~l~~~d~~~~~ 492 (953)
-+++....... +-.. .|+.++ ...-+.........+-.++|-|.|.+.+..+ +......+.|.+....+
T Consensus 411 kvdR~tK~~~~---g~f~n~eIfrir----eKdIpve~velke~vi~FaWEP~gdkF~vi~g~~~k~tvsfY~~e~~~~- 482 (698)
T KOG2314|consen 411 KVDRHTKSKVK---GQFSNLEIFRIR----EKDIPVEVVELKESVIAFAWEPHGDKFAVISGNTVKNTVSFYAVETNIK- 482 (698)
T ss_pred EEEeecccccc---ceEeeEEEEEee----ccCCCceeeecchheeeeeeccCCCeEEEEEccccccceeEEEeecCCC-
Confidence 87766432210 1112 344443 1112222233344456689999998876654 33333456777775443
Q ss_pred CCcEEeecCCCccccCCCCCCCeEeccCCCEEEEEeeeccCCCcEEEEecCCCCCCCCCCeEEEEECCCCceEEEeccCc
Q 002209 493 VAPRILFDRSSEDVYSDPGSPMMRRTSTGTYVIAKIKKENDEGTYILLNGNGATPEGNIPFLDLFDINTGSKERIWESDK 572 (953)
Q Consensus 493 ~~~~~~~~~~~~~~~~~~~~p~~~~SpDG~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~d~~~~~~~~l~~~~~ 572 (953)
++..+...+...... +.|||.|++++...... .+..|+.+|++-...++.-..+
T Consensus 483 -~~~lVk~~dk~~~N~------vfwsPkG~fvvva~l~s------------------~~g~l~F~D~~~a~~k~~~~~e- 536 (698)
T KOG2314|consen 483 -KPSLVKELDKKFANT------VFWSPKGRFVVVAALVS------------------RRGDLEFYDTDYADLKDTASPE- 536 (698)
T ss_pred -chhhhhhhcccccce------EEEcCCCcEEEEEEecc------------------cccceEEEecchhhhhhccCcc-
Confidence 444432222211111 78999999998876422 1223888887642322222111
Q ss_pred ccceeeeEeeccCCccccccccCCEEEEEEe
Q 002209 573 EKYYETTVALMSDQTEGDLYLNQLKILTSKE 603 (953)
Q Consensus 573 ~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~ 603 (953)
+| ......|+|.|++++...+
T Consensus 537 --h~--------~at~veWDPtGRYvvT~ss 557 (698)
T KOG2314|consen 537 --HF--------AATEVEWDPTGRYVVTSSS 557 (698)
T ss_pred --cc--------ccccceECCCCCEEEEeee
Confidence 01 1123568888886664433
No 167
>PRK11028 6-phosphogluconolactonase; Provisional
Probab=99.08 E-value=6.7e-08 Score=106.44 Aligned_cols=258 Identities=14% Similarity=0.129 Sum_probs=140.2
Q ss_pred CCCCceecCCCCEEEEEecCCCCCccccccccceeceEEecCCCCCCcceeeeeceEEEEccCCCCCCceeeeecCCCCC
Q 002209 110 PLPALSFSPQRDKILFLKRRALPPLEELARPEEKLAGLRIDGKCNTRSRMSFYTGIGIHQLFPDGKLGQEIEIQGFPDGA 189 (953)
Q Consensus 110 ~~~~~~~SPDG~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~i~~~~~~g~~~~~~~l~~~~~~~ 189 (953)
....+++||||++|+..... . ..|.+|++..+|.......+ +.+.
T Consensus 36 ~~~~l~~spd~~~lyv~~~~------------------------~--------~~i~~~~~~~~g~l~~~~~~---~~~~ 80 (330)
T PRK11028 36 QVQPMVISPDKRHLYVGVRP------------------------E--------FRVLSYRIADDGALTFAAES---PLPG 80 (330)
T ss_pred CCccEEECCCCCEEEEEECC------------------------C--------CcEEEEEECCCCceEEeeee---cCCC
Confidence 35578999999988665432 0 25677777533322211222 2223
Q ss_pred cccceEeccCCCeEEEEEeeccccCCCCcceEEEEECCC-Ccee-ecccCCCccccccccceEEecCCeEEEEEecCCCC
Q 002209 190 KLNFVTWSQDGKHLAFSIRIDAEDSSSSKLRVWVADVDT-GKAR-PLFQSPDIYLNAIFDNFVWVNNSTLLVCTIPLLRG 267 (953)
Q Consensus 190 ~~~~~~wSPDG~~laf~~~~~~~~~~~~~~~l~~~d~~~-g~~~-~lt~~~~~~~~~~~~~~~wspDg~~l~~~~~~~~~ 267 (953)
......++|||++|+.+.. +...|.+++++. |... .+...+.. .....++++|||+.|+++.
T Consensus 81 ~p~~i~~~~~g~~l~v~~~--------~~~~v~v~~~~~~g~~~~~~~~~~~~---~~~~~~~~~p~g~~l~v~~----- 144 (330)
T PRK11028 81 SPTHISTDHQGRFLFSASY--------NANCVSVSPLDKDGIPVAPIQIIEGL---EGCHSANIDPDNRTLWVPC----- 144 (330)
T ss_pred CceEEEECCCCCEEEEEEc--------CCCeEEEEEECCCCCCCCceeeccCC---CcccEeEeCCCCCEEEEee-----
Confidence 4567899999998876542 134566666642 3221 11111110 0034677999999998661
Q ss_pred CCCCCCCCCCCCceeecCCCccccchhhhhhcCCcchhhhhhhhccceEEEEEc-C-Ccee-------EeCCCCcccccc
Q 002209 268 DPPKKPLVPLGPKMQSNEKRDIIQVRTFQDLLKDEYDEDLFDYYATTQLVLVSL-D-GTVK-------EIGPPAVYTSLD 338 (953)
Q Consensus 268 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~l~~~~~-~-g~~~-------~l~~~~~~~~~~ 338 (953)
++...|+++++ + |... .+..+.....++
T Consensus 145 -------------------------------------------~~~~~v~v~d~~~~g~l~~~~~~~~~~~~g~~p~~~~ 181 (330)
T PRK11028 145 -------------------------------------------LKEDRIRLFTLSDDGHLVAQEPAEVTTVEGAGPRHMV 181 (330)
T ss_pred -------------------------------------------CCCCEEEEEEECCCCcccccCCCceecCCCCCCceEE
Confidence 03356778887 3 4332 111224456789
Q ss_pred cCCCCcEEEEEEecCCccccccCCCCCcceEEEecc--CceEEEeccCCCcccCCccccccccCccceeeccCCCCceEE
Q 002209 339 PSPDEKYILISSIHRPYSFIVPCGRFPRQVGVWTTD--GIFVRELCDLPLAEDIPIAFNSVRKGMRSINWRSDKPSTLYW 416 (953)
Q Consensus 339 ~SpDG~~l~~~~~~~~~~~~~~~~~~~~~i~~~d~~--g~~~~~l~~~~~~~~~p~~~~~~~~~~~~~~wspDg~~i~~~ 416 (953)
|+|||++++.+... .+.|.+|+++ ++..+.+..... .|...... .....+.++|||+.++..
T Consensus 182 ~~pdg~~lyv~~~~------------~~~v~v~~~~~~~~~~~~~~~~~~---~p~~~~~~-~~~~~i~~~pdg~~lyv~ 245 (330)
T PRK11028 182 FHPNQQYAYCVNEL------------NSSVDVWQLKDPHGEIECVQTLDM---MPADFSDT-RWAADIHITPDGRHLYAC 245 (330)
T ss_pred ECCCCCEEEEEecC------------CCEEEEEEEeCCCCCEEEEEEEec---CCCcCCCC-ccceeEEECCCCCEEEEe
Confidence 99999998877531 3489999987 333332222110 11100000 112347899999865443
Q ss_pred EEeccCCCcccccccCCeEEEEecCCCCCCCceEEe--ecccccCCeeeccCCceEEEEEecccCceEEEEEcCCCC
Q 002209 417 AETQDGGDAKVEVTPRDIIYTQQAEPVQGEGPEILH--KLDLRYGGISWCDDSLALVYESWYKTRRTRTWVISPGSK 491 (953)
Q Consensus 417 ~~~~~~~~~~~~~~~~~~l~~~d~~~~~g~~~~~l~--~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~l~~~d~~~~ 491 (953)
++ ..+.|.++++ ..+++..+.+. ........+.++|||++|+.+...+ ....+|.++.+++
T Consensus 246 -~~-----------~~~~I~v~~i-~~~~~~~~~~~~~~~~~~p~~~~~~~dg~~l~va~~~~-~~v~v~~~~~~~g 308 (330)
T PRK11028 246 -DR-----------TASLISVFSV-SEDGSVLSFEGHQPTETQPRGFNIDHSGKYLIAAGQKS-HHISVYEIDGETG 308 (330)
T ss_pred -cC-----------CCCeEEEEEE-eCCCCeEEEeEEEeccccCCceEECCCCCEEEEEEccC-CcEEEEEEcCCCC
Confidence 11 1345666665 11233222221 1122345689999999998875433 3346777765553
No 168
>PF02897 Peptidase_S9_N: Prolyl oligopeptidase, N-terminal beta-propeller domain; InterPro: IPR004106 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This entry represents the beta-propeller domain found at the N-terminal of prolyl oligopeptidase, including acylamino-acid-releasing enzyme (also known as acylaminoacyl peptidase), which belong to the MEROPS peptidase family S9 (clan SC), subfamily S9A. The prolyl oligopeptidase family consist of a number of evolutionary related peptidases whose catalytic activity seems to be provided by a charge relay system similar to that of the trypsin family of serine proteases, but which evolved by independent convergent evolution. The N-terminal domain of prolyl oligopeptidases form an unusual 7-bladed beta-propeller consisting of seven 4-stranded beta-sheet motifs. Prolyl oligopeptidase is a large cytosolic enzyme involved in the maturation and degradation of peptide hormones and neuropeptides, which relate to the induction of amnesia. The enzyme contains a peptidase domain, where its catalytic triad (Ser554, His680, Asp641) is covered by the central tunnel of the N-terminal beta-propeller domain. In this way, large structured peptides are excluded from the active site, thereby protecting larger peptides and proteins from proteolysis in the cytosol []. The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. Mammalian acylaminoacyl peptidase is an exopeptidase that is a member of the same prolyl oligopeptidase family of serine peptidases. This enzyme removes acylated amino acid residues from the N terminus of oligopeptides [].; GO: 0004252 serine-type endopeptidase activity, 0006508 proteolysis; PDB: 2BKL_B 3DDU_A 1YR2_A 2XE4_A 1VZ3_A 3EQ9_A 1O6F_A 3EQ7_A 4AN0_A 1UOP_A ....
Probab=99.08 E-value=8e-08 Score=109.39 Aligned_cols=318 Identities=12% Similarity=0.060 Sum_probs=174.8
Q ss_pred CCCeEEEEEeeccccCCCCcceEEEEECC--CCce-eecccCCCcc--c-cccccceEEecCCeEEEEEecCCCCCCCCC
Q 002209 199 DGKHLAFSIRIDAEDSSSSKLRVWVADVD--TGKA-RPLFQSPDIY--L-NAIFDNFVWVNNSTLLVCTIPLLRGDPPKK 272 (953)
Q Consensus 199 DG~~laf~~~~~~~~~~~~~~~l~~~d~~--~g~~-~~lt~~~~~~--~-~~~~~~~~wspDg~~l~~~~~~~~~~~~~~ 272 (953)
.|.+.+|....+ +.....+|+.... .|.. +.|....... . ...+..+.+||||++|+|+....+.
T Consensus 77 ~g~~~y~~~~~~----~~~~~~~~r~~~~~~~~~~~evllD~n~l~~~~~~~~~~~~~~Spdg~~la~~~s~~G~----- 147 (414)
T PF02897_consen 77 RGGYYYYSRNQG----GKNYPVLYRRKTDEEDGPEEEVLLDPNELAKDGGYVSLGGFSVSPDGKRLAYSLSDGGS----- 147 (414)
T ss_dssp ETTEEEEEEE-S----S-SS-EEEEEETTS-TS-C-EEEEEGGGGSTTSS-EEEEEEEETTTSSEEEEEEEETTS-----
T ss_pred ECCeEEEEEEcC----CCceEEEEEEecccCCCCceEEEEcchHhhccCceEEeeeeeECCCCCEEEEEecCCCC-----
Confidence 466666665422 3334556666665 3443 3333221100 0 1123467889999999998322111
Q ss_pred CCCCCCCceeecCCCccccchhhhhhcCCcchhhhhhhhccceEEEEEc-CCceeEeC-CCCcccccccCCCCcEEEEEE
Q 002209 273 PLVPLGPKMQSNEKRDIIQVRTFQDLLKDEYDEDLFDYYATTQLVLVSL-DGTVKEIG-PPAVYTSLDPSPDEKYILISS 350 (953)
Q Consensus 273 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~l~~~~~-~g~~~~l~-~~~~~~~~~~SpDG~~l~~~~ 350 (953)
....|+++|+ +|+...-. .......+.|++||+.++|+.
T Consensus 148 ---------------------------------------e~~~l~v~Dl~tg~~l~d~i~~~~~~~~~W~~d~~~~~y~~ 188 (414)
T PF02897_consen 148 ---------------------------------------EWYTLRVFDLETGKFLPDGIENPKFSSVSWSDDGKGFFYTR 188 (414)
T ss_dssp ---------------------------------------SEEEEEEEETTTTEEEEEEEEEEESEEEEECTTSSEEEEEE
T ss_pred ---------------------------------------ceEEEEEEECCCCcCcCCcccccccceEEEeCCCCEEEEEE
Confidence 2246889999 88543211 112223389999999999998
Q ss_pred ecCCccccccCCCCCcceEEEeccCceE--EEeccCCCcccCCccccccccCccceeeccCCCCceEEEEeccCCCcccc
Q 002209 351 IHRPYSFIVPCGRFPRQVGVWTTDGIFV--RELCDLPLAEDIPIAFNSVRKGMRSINWRSDKPSTLYWAETQDGGDAKVE 428 (953)
Q Consensus 351 ~~~~~~~~~~~~~~~~~i~~~d~~g~~~--~~l~~~~~~~~~p~~~~~~~~~~~~~~wspDg~~i~~~~~~~~~~~~~~~ 428 (953)
.+....-. ....+.+|+++.+.+... +.|...+... .....+.+|+||+.|++.....
T Consensus 189 ~~~~~~~~--~~~~~~~v~~~~~gt~~~~d~lvfe~~~~~----------~~~~~~~~s~d~~~l~i~~~~~-------- 248 (414)
T PF02897_consen 189 FDEDQRTS--DSGYPRQVYRHKLGTPQSEDELVFEEPDEP----------FWFVSVSRSKDGRYLFISSSSG-------- 248 (414)
T ss_dssp CSTTTSS---CCGCCEEEEEEETTS-GGG-EEEEC-TTCT----------TSEEEEEE-TTSSEEEEEEESS--------
T ss_pred eCcccccc--cCCCCcEEEEEECCCChHhCeeEEeecCCC----------cEEEEEEecCcccEEEEEEEcc--------
Confidence 66521100 122356899999875432 2333322110 0023578899999766553221
Q ss_pred cccCCeEEEEecCCCCC-----CCceEEeeccccc-CCeeeccCCceEEEEEecccCceEEEEEcCCCCCC-CcE-Eeec
Q 002209 429 VTPRDIIYTQQAEPVQG-----EGPEILHKLDLRY-GGISWCDDSLALVYESWYKTRRTRTWVISPGSKDV-APR-ILFD 500 (953)
Q Consensus 429 ~~~~~~l~~~d~~~~~g-----~~~~~l~~~~~~~-~~~~~SpDg~~l~~~~~~~~~~~~l~~~d~~~~~~-~~~-~~~~ 500 (953)
.....+|++++ .. ...+.+....... ..+... |..+++..+.+..+.+|+.++++.... ... .+..
T Consensus 249 -~~~s~v~~~d~---~~~~~~~~~~~~l~~~~~~~~~~v~~~--~~~~yi~Tn~~a~~~~l~~~~l~~~~~~~~~~~l~~ 322 (414)
T PF02897_consen 249 -TSESEVYLLDL---DDGGSPDAKPKLLSPREDGVEYYVDHH--GDRLYILTNDDAPNGRLVAVDLADPSPAEWWTVLIP 322 (414)
T ss_dssp -SSEEEEEEEEC---CCTTTSS-SEEEEEESSSS-EEEEEEE--TTEEEEEE-TT-TT-EEEEEETTSTSGGGEEEEEE-
T ss_pred -ccCCeEEEEec---cccCCCcCCcEEEeCCCCceEEEEEcc--CCEEEEeeCCCCCCcEEEEecccccccccceeEEcC
Confidence 11368999996 33 2455565433222 223332 777777777766667999999988632 112 2322
Q ss_pred CCCccccCCCCCCCeEeccCCCEEEEEeeeccCCCcEEEEecCCCCCCCCCCeEEEEECC-CCceEEEeccCcccceeee
Q 002209 501 RSSEDVYSDPGSPMMRRTSTGTYVIAKIKKENDEGTYILLNGNGATPEGNIPFLDLFDIN-TGSKERIWESDKEKYYETT 579 (953)
Q Consensus 501 ~~~~~~~~~~~~p~~~~SpDG~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~d~~-~~~~~~l~~~~~~~~~~~~ 579 (953)
....... -.++..+.+|+...... ..+.|+++++. +.....+...... .+
T Consensus 323 ~~~~~~l-------~~~~~~~~~Lvl~~~~~------------------~~~~l~v~~~~~~~~~~~~~~p~~g----~v 373 (414)
T PF02897_consen 323 EDEDVSL-------EDVSLFKDYLVLSYREN------------------GSSRLRVYDLDDGKESREIPLPEAG----SV 373 (414)
T ss_dssp -SSSEEE-------EEEEEETTEEEEEEEET------------------TEEEEEEEETT-TEEEEEEESSSSS----EE
T ss_pred CCCceeE-------EEEEEECCEEEEEEEEC------------------CccEEEEEECCCCcEEeeecCCcce----EE
Confidence 2211011 23455566666555322 25579999999 5555555444322 11
Q ss_pred EeeccCCccccccccCCEEEEEEecCCCCceEEEEECCCCCeeEEec
Q 002209 580 VALMSDQTEGDLYLNQLKILTSKESKTENTQYYIQSWPDKKSCQITD 626 (953)
Q Consensus 580 ~~~~~~~~~~~~s~dg~~l~~~~~~~~~p~~l~~~~~~~g~~~~Lt~ 626 (953)
.. .+..+++..++|..++..+|+.+|.+|+.+++.+.|+.
T Consensus 374 ~~-------~~~~~~~~~~~~~~ss~~~P~~~y~~d~~t~~~~~~k~ 413 (414)
T PF02897_consen 374 SG-------VSGDFDSDELRFSYSSFTTPPTVYRYDLATGELTLLKQ 413 (414)
T ss_dssp EE-------EES-TT-SEEEEEEEETTEEEEEEEEETTTTCEEEEEE
T ss_pred ec-------cCCCCCCCEEEEEEeCCCCCCEEEEEECCCCCEEEEEe
Confidence 11 23356788999999999999999999999999888763
No 169
>PF03583 LIP: Secretory lipase ; InterPro: IPR005152 This entry represents a family of secreted lipases. Family members include the LIP lipases from Candida albicans, which are expressed and secreted during the infection cycle of these pathogens [].; GO: 0004806 triglyceride lipase activity, 0016042 lipid catabolic process
Probab=99.08 E-value=7.4e-09 Score=109.99 Aligned_cols=191 Identities=23% Similarity=0.250 Sum_probs=120.2
Q ss_pred hHHHHHHHcCcEEEEcCCCCCCCCCChhhhhhhHHHHHHHHHHHHHHHHHc-CCCCCCcEEEEEeChHHHHHHHHHHh--
Q 002209 703 TSVLLWLARGFAILGGPTTPIIGEGDEEANDRFVEQLVACAEAAVEEVVRR-GVAHPSKIAVGGHSYGAFMTANLLAH-- 779 (953)
Q Consensus 703 ~~~~~la~~G~~V~~~~~~~~~G~G~~~~~~~~~~~~~~D~~~~~~~l~~~-~~~d~~~i~l~G~S~GG~~a~~~a~~-- 779 (953)
.....|+++||+|+.+|| .|.|..+.........+-|.+.|...+... +.-...+++++|+|.||..+++++..
T Consensus 17 ~~l~~~L~~GyaVv~pDY---~Glg~~y~~~~~~a~avLD~vRAA~~~~~~~gl~~~~~v~l~GySqGG~Aa~~AA~l~~ 93 (290)
T PF03583_consen 17 PFLAAWLARGYAVVAPDY---EGLGTPYLNGRSEAYAVLDAVRAARNLPPKLGLSPSSRVALWGYSQGGQAALWAAELAP 93 (290)
T ss_pred HHHHHHHHCCCEEEecCC---CCCCCcccCcHhHHHHHHHHHHHHHhcccccCCCCCCCEEEEeeCccHHHHHHHHHHhH
Confidence 345568899999999777 455554333333345566666666655442 22234699999999999999888754
Q ss_pred --CCCc---ccEEEEcccCCCCCCC-----C--c---------C----ccccc-----------chhhh-----------
Q 002209 780 --APHL---FCCGIARSGAYNRTLT-----P--F---------G----FQNED-----------RTLWE----------- 812 (953)
Q Consensus 780 --~p~~---~~a~v~~~~~~d~~~~-----~--~---------~----~~~~~-----------~~~~~----------- 812 (953)
.|++ +.++++.+++.|.... . + + ++... .....
T Consensus 94 ~YApeL~~~l~Gaa~gg~~~dl~~~~~~~~~~~~~g~~~~~l~gl~~~yP~l~~~~~~~l~~~g~~~~~~~~~~c~~~~~ 173 (290)
T PF03583_consen 94 SYAPELNRDLVGAAAGGPPADLAALLRALNGGPFAGLVPYALLGLAAAYPELDELLDSYLTPEGRALLDDARTRCLADIV 173 (290)
T ss_pred HhCcccccceeEEeccCCccCHHHHHhccCCCccHhHHHHHHHHHHHhCccHHHHHHHHhhHHHHHHHHHHHhhhHHHHH
Confidence 3554 6788887776652100 0 0 0 00000 00000
Q ss_pred ------------------------h---HHHHHhcCc-ccccCCCCCcEEEEEeCCCCCCCCchHHHHHHHHHHHhCC-C
Q 002209 813 ------------------------A---TSTYVEMSP-FMSANKLKKPILLVHGEEDNNSGTLTMQSDRFFNALKGHG-A 863 (953)
Q Consensus 813 ------------------------~---~~~~~~~sp-~~~~~~i~~P~Li~~G~~D~~v~~~~~~~~~~~~~l~~~g-~ 863 (953)
+ ...+.+.+. ...-..-+.|++|.||..|.+|| +..+.+++++++++| .
T Consensus 174 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~P~~Pv~i~~g~~D~vvP--~~~~~~l~~~~c~~G~a 251 (290)
T PF03583_consen 174 AEYAFQDLFTGDTRYFKPGADLLADPAFRRALAENSLGMGGDWTPTVPVLIYQGTADEVVP--PADTDALVAKWCAAGGA 251 (290)
T ss_pred HHhhhccccccchhccCChhhhhhhHHHHHHHHHhhccccCCCCCCCCEEEEecCCCCCCC--hHHHHHHHHHHHHcCCC
Confidence 0 000111110 00011225799999999999999 999999999999999 7
Q ss_pred cEEEEEeCCCCccCCCcccHHHHHHHHHHHHHHhccCCC
Q 002209 864 LCRLVILPFESHGYAARESIMHVLWETDRWLQKYCVSNT 902 (953)
Q Consensus 864 ~~~~~~~~~~~H~~~~~~~~~~~~~~i~~fl~~~l~~~~ 902 (953)
+++++.+++.+|..... .-....++||...+...+
T Consensus 252 ~V~~~~~~~~~H~~~~~----~~~~~a~~Wl~~rf~G~~ 286 (290)
T PF03583_consen 252 DVEYVRYPGGGHLGAAF----ASAPDALAWLDDRFAGKP 286 (290)
T ss_pred CEEEEecCCCChhhhhh----cCcHHHHHHHHHHHCCCC
Confidence 99999999999975321 223567899999987654
No 170
>KOG1446 consensus Histone H3 (Lys4) methyltransferase complex and RNA cleavage factor II complex, subunit SWD2 [RNA processing and modification; Chromatin structure and dynamics; Posttranslational modification, protein turnover, chaperones]
Probab=99.08 E-value=9.9e-08 Score=95.71 Aligned_cols=252 Identities=10% Similarity=0.050 Sum_probs=153.2
Q ss_pred CCCCCceecCCCCEEEEEecCCCCCccccccccceeceEEecCCCCCCcceeeeeceEEEEccCCCCCCceeeeecCCCC
Q 002209 109 PPLPALSFSPQRDKILFLKRRALPPLEELARPEEKLAGLRIDGKCNTRSRMSFYTGIGIHQLFPDGKLGQEIEIQGFPDG 188 (953)
Q Consensus 109 ~~~~~~~~SPDG~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~i~~~~~~g~~~~~~~l~~~~~~ 188 (953)
..+.++.||+||..++..+.+ ..|.|+|.. +| .+.+.|..-.
T Consensus 15 ~~i~sl~fs~~G~~litss~d---------------------------------Dsl~LYd~~-~g--~~~~ti~skk-- 56 (311)
T KOG1446|consen 15 GKINSLDFSDDGLLLITSSED---------------------------------DSLRLYDSL-SG--KQVKTINSKK-- 56 (311)
T ss_pred CceeEEEecCCCCEEEEecCC---------------------------------CeEEEEEcC-CC--ceeeEeeccc--
Confidence 357789999999999986654 257899984 33 3344443222
Q ss_pred CcccceEeccCCCeEEEEEeeccccCCCCcceEEEEECCCCceeecccCCCccccccccceEEecCCeEEEEEecCCCCC
Q 002209 189 AKLNFVTWSQDGKHLAFSIRIDAEDSSSSKLRVWVADVDTGKARPLFQSPDIYLNAIFDNFVWVNNSTLLVCTIPLLRGD 268 (953)
Q Consensus 189 ~~~~~~~wSPDG~~laf~~~~~~~~~~~~~~~l~~~d~~~g~~~~lt~~~~~~~~~~~~~~~wspDg~~l~~~~~~~~~~ 268 (953)
..+....|.-....+.+.++ .++..|..+++.+.+..+...+.... +.++.-+|-+..++.+
T Consensus 57 yG~~~~~Fth~~~~~i~sSt-------k~d~tIryLsl~dNkylRYF~GH~~~----V~sL~~sP~~d~FlS~------- 118 (311)
T KOG1446|consen 57 YGVDLACFTHHSNTVIHSST-------KEDDTIRYLSLHDNKYLRYFPGHKKR----VNSLSVSPKDDTFLSS------- 118 (311)
T ss_pred ccccEEEEecCCceEEEccC-------CCCCceEEEEeecCceEEEcCCCCce----EEEEEecCCCCeEEec-------
Confidence 24677788777777777553 34678999999998888877665544 7788889988766644
Q ss_pred CCCCCCCCCCCceeecCCCccccchhhhhhcCCcchhhhhhhhccceEEEEEc-CCceeEeCCCCcccccccCCCCcEEE
Q 002209 269 PPKKPLVPLGPKMQSNEKRDIIQVRTFQDLLKDEYDEDLFDYYATTQLVLVSL-DGTVKEIGPPAVYTSLDPSPDEKYIL 347 (953)
Q Consensus 269 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~l~~~~~-~g~~~~l~~~~~~~~~~~SpDG~~l~ 347 (953)
..| ..|..+|+ ..+-+-+-....-.-.++.|.|-.+|
T Consensus 119 ---------------------------------S~D---------~tvrLWDlR~~~cqg~l~~~~~pi~AfDp~GLifA 156 (311)
T KOG1446|consen 119 ---------------------------------SLD---------KTVRLWDLRVKKCQGLLNLSGRPIAAFDPEGLIFA 156 (311)
T ss_pred ---------------------------------ccC---------CeEEeeEecCCCCceEEecCCCcceeECCCCcEEE
Confidence 111 23444454 33222221112223468999995555
Q ss_pred EEEecCCccccccCCCCCcceEEEecc--CceEEEeccCCCcccCCccccccccCccceeeccCCCCceEEEEeccCCCc
Q 002209 348 ISSIHRPYSFIVPCGRFPRQVGVWTTD--GIFVRELCDLPLAEDIPIAFNSVRKGMRSINWRSDKPSTLYWAETQDGGDA 425 (953)
Q Consensus 348 ~~~~~~~~~~~~~~~~~~~~i~~~d~~--g~~~~~l~~~~~~~~~p~~~~~~~~~~~~~~wspDg~~i~~~~~~~~~~~~ 425 (953)
..... ..|.++|+. ++.+...-.... ........+.||||||.|+..
T Consensus 157 ~~~~~-------------~~IkLyD~Rs~dkgPF~tf~i~~---------~~~~ew~~l~FS~dGK~iLls--------- 205 (311)
T KOG1446|consen 157 LANGS-------------ELIKLYDLRSFDKGPFTTFSITD---------NDEAEWTDLEFSPDGKSILLS--------- 205 (311)
T ss_pred EecCC-------------CeEEEEEecccCCCCceeEccCC---------CCccceeeeEEcCCCCEEEEE---------
Confidence 54421 278899986 222222111110 011223568999999998887
Q ss_pred ccccccCCeEEEEecCCCCCCCceEEeecccc---cCCeeeccCCceEEEEEecccCceEEEEEcCCCCCCCcEEeecC
Q 002209 426 KVEVTPRDIIYTQQAEPVQGEGPEILHKLDLR---YGGISWCDDSLALVYESWYKTRRTRTWVISPGSKDVAPRILFDR 501 (953)
Q Consensus 426 ~~~~~~~~~l~~~d~~~~~g~~~~~l~~~~~~---~~~~~~SpDg~~l~~~~~~~~~~~~l~~~d~~~~~~~~~~~~~~ 501 (953)
...+.++++|+ .+|.....+...... ..+..|+|||+.|+..+.++ +|.+++++++ .....+..
T Consensus 206 ----T~~s~~~~lDA--f~G~~~~tfs~~~~~~~~~~~a~ftPds~Fvl~gs~dg----~i~vw~~~tg--~~v~~~~~ 272 (311)
T KOG1446|consen 206 ----TNASFIYLLDA--FDGTVKSTFSGYPNAGNLPLSATFTPDSKFVLSGSDDG----TIHVWNLETG--KKVAVLRG 272 (311)
T ss_pred ----eCCCcEEEEEc--cCCcEeeeEeeccCCCCcceeEEECCCCcEEEEecCCC----cEEEEEcCCC--cEeeEecC
Confidence 44667899997 566433333332221 23578999999988776544 4666666664 34444444
No 171
>TIGR02658 TTQ_MADH_Hv methylamine dehydrogenase heavy chain. This family consists of the heavy chain of methylamine dehydrogenase light chain, a periplasmic enzyme. The enzyme contains a tryptophan tryptophylquinone (TTQ) prothetic group derived from two Trp residues in the light subunity. The enzyme forms a complex with the type I blue copper protein amicyanin and a cytochrome. Electron transfer procedes from TQQ to the copper and then to the heme group of the cytochrome.
Probab=99.07 E-value=5.9e-08 Score=103.97 Aligned_cols=134 Identities=9% Similarity=0.037 Sum_probs=74.7
Q ss_pred ccccCC-CCcEEEEEEecCCccccccCCCCCcceEEEeccCceEEEeccCCCcccCCccccccccCccceeeccCCCCce
Q 002209 336 SLDPSP-DEKYILISSIHRPYSFIVPCGRFPRQVGVWTTDGIFVRELCDLPLAEDIPIAFNSVRKGMRSINWRSDKPSTL 414 (953)
Q Consensus 336 ~~~~Sp-DG~~l~~~~~~~~~~~~~~~~~~~~~i~~~d~~g~~~~~l~~~~~~~~~p~~~~~~~~~~~~~~wspDg~~i~ 414 (953)
.+.+++ ||+++..+. . ++|++.|+.+.+...................-..|...++++|||++++
T Consensus 198 rP~~~~~dg~~~~vs~-e-------------G~V~~id~~~~~~~~~~~~~~~~~~~~~~~wrP~g~q~ia~~~dg~~ly 263 (352)
T TIGR02658 198 HPAYSNKSGRLVWPTY-T-------------GKIFQIDLSSGDAKFLPAIEAFTEAEKADGWRPGGWQQVAYHRARDRIY 263 (352)
T ss_pred CCceEcCCCcEEEEec-C-------------CeEEEEecCCCcceecceeeeccccccccccCCCcceeEEEcCCCCEEE
Confidence 445677 886665544 2 4899999876544433221110000000001112333489999999877
Q ss_pred EEEEeccCCCcccccccCCeEEEEecCCCCCCCceEEeecccccCCeeeccCCceEEEEEecccCceEEEEEcCCCC
Q 002209 415 YWAETQDGGDAKVEVTPRDIIYTQQAEPVQGEGPEILHKLDLRYGGISWCDDSLALVYESWYKTRRTRTWVISPGSK 491 (953)
Q Consensus 415 ~~~~~~~~~~~~~~~~~~~~l~~~d~~~~~g~~~~~l~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~l~~~d~~~~ 491 (953)
....... ......+.+.|+++|. ..++............++++||||+.++|..+.... .|.++|..++
T Consensus 264 V~~~~~~---~~thk~~~~~V~ViD~---~t~kvi~~i~vG~~~~~iavS~Dgkp~lyvtn~~s~--~VsViD~~t~ 332 (352)
T TIGR02658 264 LLADQRA---KWTHKTASRFLFVVDA---KTGKRLRKIELGHEIDSINVSQDAKPLLYALSTGDK--TLYIFDAETG 332 (352)
T ss_pred EEecCCc---cccccCCCCEEEEEEC---CCCeEEEEEeCCCceeeEEECCCCCeEEEEeCCCCC--cEEEEECcCC
Confidence 7543211 1112234568999996 434333222334456789999999966665554433 6889998875
No 172
>PRK13616 lipoprotein LpqB; Provisional
Probab=99.06 E-value=2.7e-09 Score=123.34 Aligned_cols=113 Identities=11% Similarity=0.152 Sum_probs=80.2
Q ss_pred CCCCCceecCCCCEEEEEecCCCCCccccccccceeceEEecCCCCCCcceeeeeceEEEEccCCCCCCceeeeecCCCC
Q 002209 109 PPLPALSFSPQRDKILFLKRRALPPLEELARPEEKLAGLRIDGKCNTRSRMSFYTGIGIHQLFPDGKLGQEIEIQGFPDG 188 (953)
Q Consensus 109 ~~~~~~~~SPDG~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~i~~~~~~g~~~~~~~l~~~~~~ 188 (953)
..+.++++||||+++||+... .+.+.+.. ..||+.+. + +..++++ .+
T Consensus 350 ~~vsspaiSpdG~~vA~v~~~-------------------~~~~~d~~------s~Lwv~~~--g---g~~~~lt---~g 396 (591)
T PRK13616 350 GNITSAALSRSGRQVAAVVTL-------------------GRGAPDPA------SSLWVGPL--G---GVAVQVL---EG 396 (591)
T ss_pred cCcccceECCCCCEEEEEEee-------------------cCCCCCcc------eEEEEEeC--C---Ccceeee---cC
Confidence 357789999999999999864 22222223 37899886 2 2335554 23
Q ss_pred CcccceEeccCCCeEEEEEeecc---ccCCCCcceEEEEECCCCceeecccCCCccccccccceEEecCCeEEEEE
Q 002209 189 AKLNFVTWSQDGKHLAFSIRIDA---EDSSSSKLRVWVADVDTGKARPLFQSPDIYLNAIFDNFVWVNNSTLLVCT 261 (953)
Q Consensus 189 ~~~~~~~wSPDG~~laf~~~~~~---~~~~~~~~~l~~~d~~~g~~~~lt~~~~~~~~~~~~~~~wspDg~~l~~~ 261 (953)
.....|+|||||++|+|..+... ....++..+||++++++++.++ ..+.. +..+.|||||++|+|.
T Consensus 397 ~~~t~PsWspDG~~lw~v~dg~~~~~v~~~~~~gql~~~~vd~ge~~~--~~~g~-----Issl~wSpDG~RiA~i 465 (591)
T PRK13616 397 HSLTRPSWSLDADAVWVVVDGNTVVRVIRDPATGQLARTPVDASAVAS--RVPGP-----ISELQLSRDGVRAAMI 465 (591)
T ss_pred CCCCCceECCCCCceEEEecCcceEEEeccCCCceEEEEeccCchhhh--ccCCC-----cCeEEECCCCCEEEEE
Confidence 35899999999999999865311 1223456799999999988765 22222 7799999999999988
No 173
>KOG1407 consensus WD40 repeat protein [Function unknown]
Probab=99.06 E-value=3.2e-08 Score=96.18 Aligned_cols=229 Identities=13% Similarity=0.142 Sum_probs=130.3
Q ss_pred cccceEeccCCCeEEEEEeeccccCCCCcceEEEEECCCCceeecccCCCccccccccceEEecCCeEEEEEecCCCCCC
Q 002209 190 KLNFVTWSQDGKHLAFSIRIDAEDSSSSKLRVWVADVDTGKARPLFQSPDIYLNAIFDNFVWVNNSTLLVCTIPLLRGDP 269 (953)
Q Consensus 190 ~~~~~~wSPDG~~laf~~~~~~~~~~~~~~~l~~~d~~~g~~~~lt~~~~~~~~~~~~~~~wspDg~~l~~~~~~~~~~~ 269 (953)
.+..+.|.-||..|+-.+ -++...+|-++ .+ +.+......+..+.+..+.|.|-..-+++++
T Consensus 22 ~v~Sv~wn~~g~~lasgs-------~dktv~v~n~e--~~--r~~~~~~~~gh~~svdql~w~~~~~d~~ata------- 83 (313)
T KOG1407|consen 22 KVHSVAWNCDGTKLASGS-------FDKTVSVWNLE--RD--RFRKELVYRGHTDSVDQLCWDPKHPDLFATA------- 83 (313)
T ss_pred cceEEEEcccCceeeecc-------cCCceEEEEec--ch--hhhhhhcccCCCcchhhheeCCCCCcceEEe-------
Confidence 577899999999999754 22344555554 43 2233223333333477888986665444331
Q ss_pred CCCCCCCCCCceeecCCCccccchhhhhhcCCcchhhhhhhhccceEEEEEc-CCceeEeCC-CCcccccccCCCCcEEE
Q 002209 270 PKKPLVPLGPKMQSNEKRDIIQVRTFQDLLKDEYDEDLFDYYATTQLVLVSL-DGTVKEIGP-PAVYTSLDPSPDEKYIL 347 (953)
Q Consensus 270 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~l~~~~~-~g~~~~l~~-~~~~~~~~~SpDG~~l~ 347 (953)
++...|.++|. .++.....+ .+....+.|||||++++
T Consensus 84 -----------------------------------------s~dk~ir~wd~r~~k~~~~i~~~~eni~i~wsp~g~~~~ 122 (313)
T KOG1407|consen 84 -----------------------------------------SGDKTIRIWDIRSGKCTARIETKGENINITWSPDGEYIA 122 (313)
T ss_pred -----------------------------------------cCCceEEEEEeccCcEEEEeeccCcceEEEEcCCCCEEE
Confidence 13345667787 665544443 35556789999999999
Q ss_pred EEEecCCccccccCCCCCcceEEEeccCceEEEeccCCCcccCCccccccccCccceeeccCCCCceEEEEeccCCCccc
Q 002209 348 ISSIHRPYSFIVPCGRFPRQVGVWTTDGIFVRELCDLPLAEDIPIAFNSVRKGMRSINWRSDKPSTLYWAETQDGGDAKV 427 (953)
Q Consensus 348 ~~~~~~~~~~~~~~~~~~~~i~~~d~~g~~~~~l~~~~~~~~~p~~~~~~~~~~~~~~wspDg~~i~~~~~~~~~~~~~~ 427 (953)
+...++ .|..+|.....+.. ..+. + ..+..+.|+-++ .+.|.+
T Consensus 123 ~~~kdD-------------~it~id~r~~~~~~--~~~~----~-------~e~ne~~w~~~n-d~Fflt---------- 165 (313)
T KOG1407|consen 123 VGNKDD-------------RITFIDARTYKIVN--EEQF----K-------FEVNEISWNNSN-DLFFLT---------- 165 (313)
T ss_pred EecCcc-------------cEEEEEecccceee--hhcc----c-------ceeeeeeecCCC-CEEEEe----------
Confidence 987554 56666665332221 1111 1 112357788444 344442
Q ss_pred ccccCCeEEEEecCCCCCCCceEEeecccccCCeeeccCCceEEEEEecccCceEEEEEcCCCCCCCcEEeecCCCcccc
Q 002209 428 EVTPRDIIYTQQAEPVQGEGPEILHKLDLRYGGISWCDDSLALVYESWYKTRRTRTWVISPGSKDVAPRILFDRSSEDVY 507 (953)
Q Consensus 428 ~~~~~~~l~~~d~~~~~g~~~~~l~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~ 507 (953)
.+.+.+-++.. | .-.....+..+......+.|+|+||+++..+.+.. ..||-++--- -.+.++...... .
T Consensus 166 --~GlG~v~ILsy-p-sLkpv~si~AH~snCicI~f~p~GryfA~GsADAl--vSLWD~~ELi---C~R~isRldwpV-R 235 (313)
T KOG1407|consen 166 --NGLGCVEILSY-P-SLKPVQSIKAHPSNCICIEFDPDGRYFATGSADAL--VSLWDVDELI---CERCISRLDWPV-R 235 (313)
T ss_pred --cCCceEEEEec-c-ccccccccccCCcceEEEEECCCCceEeeccccce--eeccChhHhh---hheeeccccCce-E
Confidence 22333433332 1 11222335666666777999999999998765442 2566554111 124444433322 1
Q ss_pred CCCCCCCeEeccCCCEEEEEeee
Q 002209 508 SDPGSPMMRRTSTGTYVIAKIKK 530 (953)
Q Consensus 508 ~~~~~p~~~~SpDG~~l~~~~~~ 530 (953)
. ++||.||++|+..+.+
T Consensus 236 T------lSFS~dg~~lASaSED 252 (313)
T KOG1407|consen 236 T------LSFSHDGRMLASASED 252 (313)
T ss_pred E------EEeccCcceeeccCcc
Confidence 1 8999999999987643
No 174
>PRK06765 homoserine O-acetyltransferase; Provisional
Probab=99.04 E-value=6.5e-09 Score=114.93 Aligned_cols=69 Identities=10% Similarity=0.126 Sum_probs=57.1
Q ss_pred ccCCCCCcEEEEEeCCCCCCCCchHHHHHHHHHHHhCCCcEEEEEeCC-CCccCCCcccHHHHHHHHHHHHHH
Q 002209 825 SANKLKKPILLVHGEEDNNSGTLTMQSDRFFNALKGHGALCRLVILPF-ESHGYAARESIMHVLWETDRWLQK 896 (953)
Q Consensus 825 ~~~~i~~P~Li~~G~~D~~v~~~~~~~~~~~~~l~~~g~~~~~~~~~~-~~H~~~~~~~~~~~~~~i~~fl~~ 896 (953)
.+.++++|+|+++|+.|..+| ++.++++.+.++..+...+++++++ .||... .+....+.+.+.+||++
T Consensus 318 ~L~~I~~PtLvI~G~~D~l~p--~~~~~~la~~lp~~~~~a~l~~I~s~~GH~~~-le~p~~~~~~I~~FL~~ 387 (389)
T PRK06765 318 ALSNIEANVLMIPCKQDLLQP--PRYNYKMVDILQKQGKYAEVYEIESINGHMAG-VFDIHLFEKKIYEFLNR 387 (389)
T ss_pred HHhcCCCCEEEEEeCCCCCCC--HHHHHHHHHHhhhcCCCeEEEEECCCCCcchh-hcCHHHHHHHHHHHHcc
Confidence 455789999999999999998 9999999998886666789999985 899763 46677788888888865
No 175
>PF08662 eIF2A: Eukaryotic translation initiation factor eIF2A; InterPro: IPR013979 This entry contains beta propellor domains found in eukaryotic translation initiation factors and TolB domain-containing proteins.
Probab=99.04 E-value=5.4e-09 Score=104.14 Aligned_cols=125 Identities=13% Similarity=0.140 Sum_probs=84.7
Q ss_pred hhccceEEEEEc-CCceeEeCCC--CcccccccCCCCcEEEEEEecCCccccccCCCCCcceEEEeccCceEEEeccCCC
Q 002209 310 YYATTQLVLVSL-DGTVKEIGPP--AVYTSLDPSPDEKYILISSIHRPYSFIVPCGRFPRQVGVWTTDGIFVRELCDLPL 386 (953)
Q Consensus 310 ~~~~~~l~~~~~-~g~~~~l~~~--~~~~~~~~SpDG~~l~~~~~~~~~~~~~~~~~~~~~i~~~d~~g~~~~~l~~~~~ 386 (953)
+|+...||.++. +.....+... +.+.+++|||+|+.+++.... .+..+.+||+++..+..+...
T Consensus 35 ~~~~~~l~~~~~~~~~~~~i~l~~~~~I~~~~WsP~g~~favi~g~-----------~~~~v~lyd~~~~~i~~~~~~-- 101 (194)
T PF08662_consen 35 YYGEFELFYLNEKNIPVESIELKKEGPIHDVAWSPNGNEFAVIYGS-----------MPAKVTLYDVKGKKIFSFGTQ-- 101 (194)
T ss_pred EEeeEEEEEEecCCCccceeeccCCCceEEEEECcCCCEEEEEEcc-----------CCcccEEEcCcccEeEeecCC--
Confidence 346778999988 6655555433 568999999999999888632 234899999986555544331
Q ss_pred cccCCccccccccCccceeeccCCCCceEEEEeccCCCcccccccCCeEEEEecCCCCCCCceEEee-cccccCCeeecc
Q 002209 387 AEDIPIAFNSVRKGMRSINWRSDKPSTLYWAETQDGGDAKVEVTPRDIIYTQQAEPVQGEGPEILHK-LDLRYGGISWCD 465 (953)
Q Consensus 387 ~~~~p~~~~~~~~~~~~~~wspDg~~i~~~~~~~~~~~~~~~~~~~~~l~~~d~~~~~g~~~~~l~~-~~~~~~~~~~Sp 465 (953)
....+.|||+|+.++..... +..+.+.+||. . +...+.. .......+.|||
T Consensus 102 -------------~~n~i~wsP~G~~l~~~g~~----------n~~G~l~~wd~---~--~~~~i~~~~~~~~t~~~WsP 153 (194)
T PF08662_consen 102 -------------PRNTISWSPDGRFLVLAGFG----------NLNGDLEFWDV---R--KKKKISTFEHSDATDVEWSP 153 (194)
T ss_pred -------------CceEEEECCCCCEEEEEEcc----------CCCcEEEEEEC---C--CCEEeeccccCcEEEEEEcC
Confidence 12358999999988876110 12356889996 2 3334422 233456789999
Q ss_pred CCceEEEEEe
Q 002209 466 DSLALVYESW 475 (953)
Q Consensus 466 Dg~~l~~~~~ 475 (953)
||++|+.+..
T Consensus 154 dGr~~~ta~t 163 (194)
T PF08662_consen 154 DGRYLATATT 163 (194)
T ss_pred CCCEEEEEEe
Confidence 9999987753
No 176
>KOG0263 consensus Transcription initiation factor TFIID, subunit TAF5 (also component of histone acetyltransferase SAGA) [Transcription]
Probab=99.02 E-value=5.7e-09 Score=116.33 Aligned_cols=146 Identities=10% Similarity=0.059 Sum_probs=97.8
Q ss_pred CcccccccCCCCcEEEEEEecCCccccccCCCCCcceEEEeccCceEEEeccCCCcccCCccccccccCccceeeccCCC
Q 002209 332 AVYTSLDPSPDEKYILISSIHRPYSFIVPCGRFPRQVGVWTTDGIFVRELCDLPLAEDIPIAFNSVRKGMRSINWRSDKP 411 (953)
Q Consensus 332 ~~~~~~~~SpDG~~l~~~~~~~~~~~~~~~~~~~~~i~~~d~~g~~~~~l~~~~~~~~~p~~~~~~~~~~~~~~wspDg~ 411 (953)
..+..+.|+|-|-+.|..+.+. .-.+|..+...+-++-.... .-+.-+.|.|++.
T Consensus 494 ~PVwdV~F~P~GyYFatas~D~-------------tArLWs~d~~~PlRifaghl------------sDV~cv~FHPNs~ 548 (707)
T KOG0263|consen 494 APVWDVQFAPRGYYFATASHDQ-------------TARLWSTDHNKPLRIFAGHL------------SDVDCVSFHPNSN 548 (707)
T ss_pred cceeeEEecCCceEEEecCCCc-------------eeeeeecccCCchhhhcccc------------cccceEEECCccc
Confidence 6677788999997777665332 55678777544333333222 2234478999987
Q ss_pred CceEEEEeccCCCcccccccCCeEEEEecCCCCCCCceEEeecccccCCeeeccCCceEEEEEecccCceEEEEEcCCCC
Q 002209 412 STLYWAETQDGGDAKVEVTPRDIIYTQQAEPVQGEGPEILHKLDLRYGGISWCDDSLALVYESWYKTRRTRTWVISPGSK 491 (953)
Q Consensus 412 ~i~~~~~~~~~~~~~~~~~~~~~l~~~d~~~~~g~~~~~l~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~l~~~d~~~~ 491 (953)
.++-. +.+..+.+||+ .+|...+..+++...+..++|||+|++|+.++.++ .|-++|+.++
T Consensus 549 Y~aTG-------------SsD~tVRlWDv--~~G~~VRiF~GH~~~V~al~~Sp~Gr~LaSg~ed~----~I~iWDl~~~ 609 (707)
T KOG0263|consen 549 YVATG-------------SSDRTVRLWDV--STGNSVRIFTGHKGPVTALAFSPCGRYLASGDEDG----LIKIWDLANG 609 (707)
T ss_pred ccccC-------------CCCceEEEEEc--CCCcEEEEecCCCCceEEEEEcCCCceEeecccCC----cEEEEEcCCC
Confidence 54432 44557888996 56666677788888999999999999999876554 4555566664
Q ss_pred CCCcEEeecCCCccccCCCCCCCeEeccCCCEEEEEee
Q 002209 492 DVAPRILFDRSSEDVYSDPGSPMMRRTSTGTYVIAKIK 529 (953)
Q Consensus 492 ~~~~~~~~~~~~~~~~~~~~~p~~~~SpDG~~l~~~~~ 529 (953)
+...........+++ ++||.||..|+....
T Consensus 610 --~~v~~l~~Ht~ti~S------lsFS~dg~vLasgg~ 639 (707)
T KOG0263|consen 610 --SLVKQLKGHTGTIYS------LSFSRDGNVLASGGA 639 (707)
T ss_pred --cchhhhhcccCceeE------EEEecCCCEEEecCC
Confidence 333333333444555 899999999887763
No 177
>PRK05855 short chain dehydrogenase; Validated
Probab=99.01 E-value=3.3e-09 Score=127.15 Aligned_cols=213 Identities=14% Similarity=0.102 Sum_probs=121.2
Q ss_pred EcCCCcEEEEEEEcCCCCCCCCCCCccEEEEeCCCCCcCcCCCCcccCCCCCCCCccchHHHHHHHcCcEEEEcCCCCCC
Q 002209 645 QRKDGVQLSATLYLPPGYDPSKDGPLPCLFWSYPGEFKSKDAAGQVRGSPNEFPRIGSTSVLLWLARGFAILGGPTTPII 724 (953)
Q Consensus 645 ~~~dg~~~~~~l~~P~~~~~~~~~~~P~vv~~hGg~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~G~~V~~~~~~~~~ 724 (953)
...+|..++.+.+-++ ..|+||++||.+... ..| . .....| ..||.|++ +|.+
T Consensus 8 ~~~~g~~l~~~~~g~~--------~~~~ivllHG~~~~~-----------~~w---~-~~~~~L-~~~~~Vi~---~D~~ 60 (582)
T PRK05855 8 VSSDGVRLAVYEWGDP--------DRPTVVLVHGYPDNH-----------EVW---D-GVAPLL-ADRFRVVA---YDVR 60 (582)
T ss_pred EeeCCEEEEEEEcCCC--------CCCeEEEEcCCCchH-----------HHH---H-HHHHHh-hcceEEEE---ecCC
Confidence 3458888887665321 157899999963211 111 1 223334 78999999 5556
Q ss_pred CCCChhhhh----hhHHHHHHHHHHHHHHHHHcCCCCCCcEEEEEeChHHHHHHHHHHhC--CCcccEEEEcccCC-CC-
Q 002209 725 GEGDEEAND----RFVEQLVACAEAAVEEVVRRGVAHPSKIAVGGHSYGAFMTANLLAHA--PHLFCCGIARSGAY-NR- 796 (953)
Q Consensus 725 G~G~~~~~~----~~~~~~~~D~~~~~~~l~~~~~~d~~~i~l~G~S~GG~~a~~~a~~~--p~~~~a~v~~~~~~-d~- 796 (953)
|+|.+.... .......+|+..+++.+. . ..++.|+||||||.+++.++... +.++...+..++.. +.
T Consensus 61 G~G~S~~~~~~~~~~~~~~a~dl~~~i~~l~----~-~~~~~lvGhS~Gg~~a~~~a~~~~~~~~v~~~~~~~~~~~~~~ 135 (582)
T PRK05855 61 GAGRSSAPKRTAAYTLARLADDFAAVIDAVS----P-DRPVHLLAHDWGSIQGWEAVTRPRAAGRIASFTSVSGPSLDHV 135 (582)
T ss_pred CCCCCCCCCcccccCHHHHHHHHHHHHHHhC----C-CCcEEEEecChHHHHHHHHHhCccchhhhhhheeccCCchHHH
Confidence 788775321 235667778777777652 1 23599999999999988777652 23344333333211 00
Q ss_pred ------CC---CCcCc--------c----------c---------ccchhhh------------------------hHHH
Q 002209 797 ------TL---TPFGF--------Q----------N---------EDRTLWE------------------------ATST 816 (953)
Q Consensus 797 ------~~---~~~~~--------~----------~---------~~~~~~~------------------------~~~~ 816 (953)
.. .+..+ . . .....+. ....
T Consensus 136 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 215 (582)
T PRK05855 136 GFWLRSGLRRPTPRRLARALGQLLRSWYIYLFHLPVLPELLWRLGLGRAWPRLLRRVEGTPVDPIPTQTTLSDGAHGVKL 215 (582)
T ss_pred HHHHhhcccccchhhhhHHHHHHhhhHHHHHHhCCCCcHHHhccchhhHHHHhhhhccCCCcchhhhhhhhccccchHHH
Confidence 00 00000 0 0 0000000 0000
Q ss_pred HHh----cCcccccCCCCCcEEEEEeCCCCCCCCchHHHHHHHHHHHhCCCcEEEEEeCCCCccCCCcccHHHHHHHHHH
Q 002209 817 YVE----MSPFMSANKLKKPILLVHGEEDNNSGTLTMQSDRFFNALKGHGALCRLVILPFESHGYAARESIMHVLWETDR 892 (953)
Q Consensus 817 ~~~----~sp~~~~~~i~~P~Li~~G~~D~~v~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~H~~~~~~~~~~~~~~i~~ 892 (953)
+.. .........+++|+|+++|++|..+| ......+.+.+. ..++++++ +||... .+....+.+.+.+
T Consensus 216 ~~~~~~~~~~~~~~~~~~~P~lii~G~~D~~v~--~~~~~~~~~~~~----~~~~~~~~-~gH~~~-~e~p~~~~~~i~~ 287 (582)
T PRK05855 216 YRANMIRSLSRPRERYTDVPVQLIVPTGDPYVR--PALYDDLSRWVP----RLWRREIK-AGHWLP-MSHPQVLAAAVAE 287 (582)
T ss_pred HHhhhhhhhccCccCCccCceEEEEeCCCcccC--HHHhccccccCC----cceEEEcc-CCCcch-hhChhHHHHHHHH
Confidence 000 00011133478999999999999998 777776654442 24666776 589764 5667778888999
Q ss_pred HHHHh
Q 002209 893 WLQKY 897 (953)
Q Consensus 893 fl~~~ 897 (953)
|+.+.
T Consensus 288 fl~~~ 292 (582)
T PRK05855 288 FVDAV 292 (582)
T ss_pred HHHhc
Confidence 99874
No 178
>COG2706 3-carboxymuconate cyclase [Carbohydrate transport and metabolism]
Probab=99.01 E-value=7.1e-07 Score=91.77 Aligned_cols=252 Identities=10% Similarity=0.065 Sum_probs=141.3
Q ss_pred EEEEEc-CCceeEeCCC----CcccccccCCCCcEEEEEEecCCccccccCCCCCcceEEEecc-CceEEEe---ccCCC
Q 002209 316 LVLVSL-DGTVKEIGPP----AVYTSLDPSPDEKYILISSIHRPYSFIVPCGRFPRQVGVWTTD-GIFVREL---CDLPL 386 (953)
Q Consensus 316 l~~~~~-~g~~~~l~~~----~~~~~~~~SpDG~~l~~~~~~~~~~~~~~~~~~~~~i~~~d~~-g~~~~~l---~~~~~ 386 (953)
-|.+|- +|+.+.+... .....+++++||++|+.+..+. +.|.++.+. .+.+..+ ..+..
T Consensus 68 ay~iD~~~G~Lt~ln~~~~~g~~p~yvsvd~~g~~vf~AnY~~------------g~v~v~p~~~dG~l~~~v~~~~h~g 135 (346)
T COG2706 68 AYRIDPDDGRLTFLNRQTLPGSPPCYVSVDEDGRFVFVANYHS------------GSVSVYPLQADGSLQPVVQVVKHTG 135 (346)
T ss_pred EEEEcCCCCeEEEeeccccCCCCCeEEEECCCCCEEEEEEccC------------ceEEEEEcccCCccccceeeeecCC
Confidence 345555 5777666533 3336789999999888776443 356666664 2332222 11111
Q ss_pred cccCCccccccccCccceeeccCCCCceEEEEeccCCCcccccccCCeEEEEecCCCCCCCceEE----eecccccCCee
Q 002209 387 AEDIPIAFNSVRKGMRSINWRSDKPSTLYWAETQDGGDAKVEVTPRDIIYTQQAEPVQGEGPEIL----HKLDLRYGGIS 462 (953)
Q Consensus 387 ~~~~p~~~~~~~~~~~~~~wspDg~~i~~~~~~~~~~~~~~~~~~~~~l~~~d~~~~~g~~~~~l----~~~~~~~~~~~ 462 (953)
. .|- ..-...-.-...++|||+.++.. + -+.++++++++ +.|..... .......+.+.
T Consensus 136 ~--~p~-~rQ~~~h~H~a~~tP~~~~l~v~-D-----------LG~Dri~~y~~---~dg~L~~~~~~~v~~G~GPRHi~ 197 (346)
T COG2706 136 S--GPH-ERQESPHVHSANFTPDGRYLVVP-D-----------LGTDRIFLYDL---DDGKLTPADPAEVKPGAGPRHIV 197 (346)
T ss_pred C--CCC-ccccCCccceeeeCCCCCEEEEe-e-----------cCCceEEEEEc---ccCccccccccccCCCCCcceEE
Confidence 1 010 00000012346789999866544 1 23568999997 33332222 12233345689
Q ss_pred eccCCceEEEEEecccCceEEEEEcCCCCCCCcEEeecCCCccccCCCCCCCeEeccCCCEEEEEeeeccCCCcEEEEec
Q 002209 463 WCDDSLALVYESWYKTRRTRTWVISPGSKDVAPRILFDRSSEDVYSDPGSPMMRRTSTGTYVIAKIKKENDEGTYILLNG 542 (953)
Q Consensus 463 ~SpDg~~l~~~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~SpDG~~l~~~~~~~~~~~~~~~~~~ 542 (953)
|.|+|+..+...+-+ ....+|.++...+..+..+....-.++..+....-.+..|+||++|+......
T Consensus 198 FHpn~k~aY~v~EL~-stV~v~~y~~~~g~~~~lQ~i~tlP~dF~g~~~~aaIhis~dGrFLYasNRg~----------- 265 (346)
T COG2706 198 FHPNGKYAYLVNELN-STVDVLEYNPAVGKFEELQTIDTLPEDFTGTNWAAAIHISPDGRFLYASNRGH----------- 265 (346)
T ss_pred EcCCCcEEEEEeccC-CEEEEEEEcCCCceEEEeeeeccCccccCCCCceeEEEECCCCCEEEEecCCC-----------
Confidence 999999877665544 33467888876543232222222223333333333378999999998775432
Q ss_pred CCCCCCCCCCeEEEEECCCCceEEEeccCcccceeeeEeeccCCccccccccCCEEEEEEecCCCCceEEEEECCCCCee
Q 002209 543 NGATPEGNIPFLDLFDINTGSKERIWESDKEKYYETTVALMSDQTEGDLYLNQLKILTSKESKTENTQYYIQSWPDKKSC 622 (953)
Q Consensus 543 ~~~~~~~~~~~L~~~d~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~p~~l~~~~~~~g~~~ 622 (953)
+.-.++.+|.++++...+....-+ ....+ ...|+++|+.|+...+... .-.+|.++..+|+..
T Consensus 266 -------dsI~~f~V~~~~g~L~~~~~~~te-------g~~PR--~F~i~~~g~~Liaa~q~sd-~i~vf~~d~~TG~L~ 328 (346)
T COG2706 266 -------DSIAVFSVDPDGGKLELVGITPTE-------GQFPR--DFNINPSGRFLIAANQKSD-NITVFERDKETGRLT 328 (346)
T ss_pred -------CeEEEEEEcCCCCEEEEEEEeccC-------CcCCc--cceeCCCCCEEEEEccCCC-cEEEEEEcCCCceEE
Confidence 122366777778876655332211 00011 2467888887777666554 367899999999877
Q ss_pred EEec
Q 002209 623 QITD 626 (953)
Q Consensus 623 ~Lt~ 626 (953)
.+..
T Consensus 329 ~~~~ 332 (346)
T COG2706 329 LLGR 332 (346)
T ss_pred eccc
Confidence 7664
No 179
>PF03403 PAF-AH_p_II: Platelet-activating factor acetylhydrolase, isoform II; PDB: 3F98_B 3F97_B 3D59_A 3F96_A 3D5E_B 3F9C_A.
Probab=99.00 E-value=1e-08 Score=112.58 Aligned_cols=189 Identities=16% Similarity=0.125 Sum_probs=102.0
Q ss_pred CCccEEEEeCCCCCcCcCCCCcccCCCCCCCCccchHHHHHHHcCcEEEEcCCCCCCCCC-----Chh---h--------
Q 002209 668 GPLPCLFWSYPGEFKSKDAAGQVRGSPNEFPRIGSTSVLLWLARGFAILGGPTTPIIGEG-----DEE---A-------- 731 (953)
Q Consensus 668 ~~~P~vv~~hGg~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~G~~V~~~~~~~~~G~G-----~~~---~-------- 731 (953)
+++|+|||.||-. .++..+...+..||++||+|++++.+|..+.. ... .
T Consensus 98 ~~~PvvIFSHGlg---------------g~R~~yS~~~~eLAS~GyVV~aieHrDgSa~~t~~~~~~~~~~~~~~~~~~~ 162 (379)
T PF03403_consen 98 GKFPVVIFSHGLG---------------GSRTSYSAICGELASHGYVVAAIEHRDGSAPATYFMRDGSGAEVEPYVVEYL 162 (379)
T ss_dssp S-EEEEEEE--TT-----------------TTTTHHHHHHHHHTT-EEEEE---SS-SSEEEE-SSHHHHHHT-------
T ss_pred CCCCEEEEeCCCC---------------cchhhHHHHHHHHHhCCeEEEEeccCCCceeEEEeccCCCcccccccccccc
Confidence 3599999999931 12233446677899999999998888754310 000 0
Q ss_pred ------------hh------hhHHHHHHHHHHHHHHHHHc--------------------CCCCCCcEEEEEeChHHHHH
Q 002209 732 ------------ND------RFVEQLVACAEAAVEEVVRR--------------------GVAHPSKIAVGGHSYGAFMT 773 (953)
Q Consensus 732 ------------~~------~~~~~~~~D~~~~~~~l~~~--------------------~~~d~~~i~l~G~S~GG~~a 773 (953)
.. .....-..|+..+++.|.+. +.+|.++|+++|||+||..+
T Consensus 163 ~~~~~~~~~~~~~~~~~~R~~QL~~R~~Ei~~~l~~L~~i~~G~~~~~~l~~~~~l~~~~grlD~~~i~~~GHSFGGATa 242 (379)
T PF03403_consen 163 EEEWIPLRDFDPEEEFELRNAQLRQRVAEIQFVLDALEEINSGDPVENVLPSSFDLSQFKGRLDLSRIGLAGHSFGGATA 242 (379)
T ss_dssp --EEEE-----GGGHHHHHHHHHHHHHHHHHHHHHHHHHHHTT-----SS--SS-GGGGTT-EEEEEEEEEEETHHHHHH
T ss_pred ccceeccccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCccccccCCccCHHHHhhhcchhheeeeecCchHHHH
Confidence 00 01122366777777777531 24678899999999999999
Q ss_pred HHHHHhCCCcccEEEEcccCCCCCCCCcCcccccchhhhhHHHHHhcCcccccCCCCCcEEEEEeCCCCCCCCchHHHHH
Q 002209 774 ANLLAHAPHLFCCGIARSGAYNRTLTPFGFQNEDRTLWEATSTYVEMSPFMSANKLKKPILLVHGEEDNNSGTLTMQSDR 853 (953)
Q Consensus 774 ~~~a~~~p~~~~a~v~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~sp~~~~~~i~~P~Li~~G~~D~~v~~~~~~~~~ 853 (953)
+.++.+. .+|+++|+..|.. .+. .. .....++.|+|+|+.+. ..- ..+...
T Consensus 243 ~~~l~~d-~r~~~~I~LD~W~----~Pl----~~----------------~~~~~i~~P~L~InSe~-f~~---~~~~~~ 293 (379)
T PF03403_consen 243 LQALRQD-TRFKAGILLDPWM----FPL----GD----------------EIYSKIPQPLLFINSES-FQW---WENIFR 293 (379)
T ss_dssp HHHHHH--TT--EEEEES-------TTS-----G----------------GGGGG--S-EEEEEETT-T-----HHHHHH
T ss_pred HHHHhhc-cCcceEEEeCCcc----cCC----Cc----------------ccccCCCCCEEEEECcc-cCC---hhhHHH
Confidence 9999988 6899999887742 111 00 01134678999998884 432 333333
Q ss_pred HHHHHHhCCCcEEEEEeCCCCccCC------Cc------------ccH----HHHHHHHHHHHHHhccCC
Q 002209 854 FFNALKGHGALCRLVILPFESHGYA------AR------------ESI----MHVLWETDRWLQKYCVSN 901 (953)
Q Consensus 854 ~~~~l~~~g~~~~~~~~~~~~H~~~------~~------------~~~----~~~~~~i~~fl~~~l~~~ 901 (953)
+.+ +........++.+.|..|.-. .. .+. ....+.+++||++||+..
T Consensus 294 ~~~-~~~~~~~~~~~ti~gt~H~s~sD~~ll~P~~l~~~~~~~g~~dp~~a~~i~~~~~l~FL~~~L~~~ 362 (379)
T PF03403_consen 294 MKK-VISNNKESRMLTIKGTAHLSFSDFPLLSPWLLGKFLGLKGSIDPERALRINNRASLAFLRRHLGLH 362 (379)
T ss_dssp HHT-T--TTS-EEEEEETT--GGGGSGGGGTS-HHHHHHTTSS-SS-HHHHHHHHHHHHHHHHHHHHT--
T ss_pred HHH-HhccCCCcEEEEECCCcCCCcchhhhhhHHHHHHHhccccCcCHHHHHHHHHHHHHHHHHHhcCCc
Confidence 333 333445678889999999421 00 011 234457899999998743
No 180
>TIGR02658 TTQ_MADH_Hv methylamine dehydrogenase heavy chain. This family consists of the heavy chain of methylamine dehydrogenase light chain, a periplasmic enzyme. The enzyme contains a tryptophan tryptophylquinone (TTQ) prothetic group derived from two Trp residues in the light subunity. The enzyme forms a complex with the type I blue copper protein amicyanin and a cytochrome. Electron transfer procedes from TQQ to the copper and then to the heme group of the cytochrome.
Probab=98.98 E-value=4.5e-07 Score=97.29 Aligned_cols=92 Identities=14% Similarity=-0.022 Sum_probs=54.0
Q ss_pred eceEEEEccCCCCCCceeeeecCCCCCcccceEeccCCCeEEEEEeecc-ccCCCCcceEEEEECCCCceeecccCCCc-
Q 002209 163 TGIGIHQLFPDGKLGQEIEIQGFPDGAKLNFVTWSQDGKHLAFSIRIDA-EDSSSSKLRVWVADVDTGKARPLFQSPDI- 240 (953)
Q Consensus 163 ~~i~i~~~~~~g~~~~~~~l~~~~~~~~~~~~~wSPDG~~laf~~~~~~-~~~~~~~~~l~~~d~~~g~~~~lt~~~~~- 240 (953)
++|.+.|..+ .+ .+..++.+..... ..||||+.|+.+...-+ ...+.....|-++|+++++...=...+..
T Consensus 27 ~~v~ViD~~~----~~--v~g~i~~G~~P~~-~~spDg~~lyva~~~~~R~~~G~~~d~V~v~D~~t~~~~~~i~~p~~p 99 (352)
T TIGR02658 27 TQVYTIDGEA----GR--VLGMTDGGFLPNP-VVASDGSFFAHASTVYSRIARGKRTDYVEVIDPQTHLPIADIELPEGP 99 (352)
T ss_pred ceEEEEECCC----CE--EEEEEEccCCCce-eECCCCCEEEEEeccccccccCCCCCEEEEEECccCcEEeEEccCCCc
Confidence 4788988743 22 2222334444444 49999999987665221 12233456789999999876432222211
Q ss_pred cc--cccccceEEecCCeEEEEE
Q 002209 241 YL--NAIFDNFVWVNNSTLLVCT 261 (953)
Q Consensus 241 ~~--~~~~~~~~wspDg~~l~~~ 261 (953)
+. -.....++.||||++|++.
T Consensus 100 ~~~~~~~~~~~~ls~dgk~l~V~ 122 (352)
T TIGR02658 100 RFLVGTYPWMTSLTPDNKTLLFY 122 (352)
T ss_pred hhhccCccceEEECCCCCEEEEe
Confidence 10 0012378899999999976
No 181
>COG2382 Fes Enterochelin esterase and related enzymes [Inorganic ion transport and metabolism]
Probab=98.98 E-value=1.1e-08 Score=103.71 Aligned_cols=220 Identities=20% Similarity=0.197 Sum_probs=125.5
Q ss_pred EEEEEEcCCCcEEEEEEEcCCCCCCCCCCCccEEEEeCCCCCcCcCCCCcccCCCCCCCCccchHHHHHHHcC----cEE
Q 002209 640 ELIKYQRKDGVQLSATLYLPPGYDPSKDGPLPCLFWSYPGEFKSKDAAGQVRGSPNEFPRIGSTSVLLWLARG----FAI 715 (953)
Q Consensus 640 ~~~~~~~~dg~~~~~~l~~P~~~~~~~~~~~P~vv~~hGg~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~G----~~V 715 (953)
+.+.+.+.-..+....+|+|+++.+.. ++|++++.||-.+. .+... ......|.+.| .++
T Consensus 70 ~~~~~~~~l~~~~~~vv~lppgy~~~~--k~pvl~~~DG~~~~-------------~~g~i-~~~~dsli~~g~i~pai~ 133 (299)
T COG2382 70 EEILYSSELLSERRRVVYLPPGYNPLE--KYPVLYLQDGQDWF-------------RSGRI-PRILDSLIAAGEIPPAIL 133 (299)
T ss_pred hhhhhhhhhccceeEEEEeCCCCCccc--cccEEEEeccHHHH-------------hcCCh-HHHHHHHHHcCCCCCceE
Confidence 444454444456777899999987755 49999999994211 11111 12334455544 666
Q ss_pred EEcCCCCCCCCCChhh-hhhhHHHHHHHHHHHHHHHHHcCC--CCCCcEEEEEeChHHHHHHHHHHhCCCcccEEEEccc
Q 002209 716 LGGPTTPIIGEGDEEA-NDRFVEQLVACAEAAVEEVVRRGV--AHPSKIAVGGHSYGAFMTANLLAHAPHLFCCGIARSG 792 (953)
Q Consensus 716 ~~~~~~~~~G~G~~~~-~~~~~~~~~~D~~~~~~~l~~~~~--~d~~~i~l~G~S~GG~~a~~~a~~~p~~~~a~v~~~~ 792 (953)
+.+++.+-.-...... +..+...... +.+=++.+... -+.++-+|+|.|+||.++++++.++|++|-.+++.+|
T Consensus 134 vgid~~d~~~R~~~~~~n~~~~~~L~~---eLlP~v~~~yp~~~~a~~r~L~G~SlGG~vsL~agl~~Pe~FG~V~s~Sp 210 (299)
T COG2382 134 VGIDYIDVKKRREELHCNEAYWRFLAQ---ELLPYVEERYPTSADADGRVLAGDSLGGLVSLYAGLRHPERFGHVLSQSG 210 (299)
T ss_pred EecCCCCHHHHHHHhcccHHHHHHHHH---HhhhhhhccCcccccCCCcEEeccccccHHHHHHHhcCchhhceeeccCC
Confidence 6655533211111111 1111111121 23334444422 3567789999999999999999999999999999999
Q ss_pred CCCCCCCCcCcccccchhhhhHHHHHhcCcccccCCCCCcEEEEEeCCCCCCCCchHHHHHHHHHHHhCCCcEEEEEeCC
Q 002209 793 AYNRTLTPFGFQNEDRTLWEATSTYVEMSPFMSANKLKKPILLVHGEEDNNSGTLTMQSDRFFNALKGHGALCRLVILPF 872 (953)
Q Consensus 793 ~~d~~~~~~~~~~~~~~~~~~~~~~~~~sp~~~~~~i~~P~Li~~G~~D~~v~~~~~~~~~~~~~l~~~g~~~~~~~~~~ 872 (953)
.+++...... ..++..+... -...+.....=++...|+.+.+ ....+++++.|++++.+..+..|+|
T Consensus 211 s~~~~~~~~~------~~~~~~~~l~---~~~a~~~~~~~~l~~g~~~~~~----~~pNr~L~~~L~~~g~~~~yre~~G 277 (299)
T COG2382 211 SFWWTPLDTQ------PQGEVAESLK---ILHAIGTDERIVLTTGGEEGDF----LRPNRALAAQLEKKGIPYYYREYPG 277 (299)
T ss_pred ccccCccccc------cccchhhhhh---hhhccCccceEEeecCCccccc----cchhHHHHHHHHhcCCcceeeecCC
Confidence 8765432211 0011111111 1111122223233333444443 4567899999999999999999999
Q ss_pred CCccCCCcccHHHHHHHHHHHHHHhc
Q 002209 873 ESHGYAARESIMHVLWETDRWLQKYC 898 (953)
Q Consensus 873 ~~H~~~~~~~~~~~~~~i~~fl~~~l 898 (953)
||.+. .+...+.++|...+
T Consensus 278 -gHdw~------~Wr~~l~~~L~~l~ 296 (299)
T COG2382 278 -GHDWA------WWRPALAEGLQLLL 296 (299)
T ss_pred -CCchh------HhHHHHHHHHHHhh
Confidence 99874 23344555555443
No 182
>PLN02980 2-oxoglutarate decarboxylase/ hydro-lyase/ magnesium ion binding / thiamin pyrophosphate binding
Probab=98.98 E-value=1.4e-08 Score=131.92 Aligned_cols=199 Identities=15% Similarity=0.208 Sum_probs=119.8
Q ss_pred ccEEEEeCCCCCcCcCCCCcccCCCCCCCCccchHHHHHHHcCcEEEEcCCCCCCCCCChhhhh----------hhHHHH
Q 002209 670 LPCLFWSYPGEFKSKDAAGQVRGSPNEFPRIGSTSVLLWLARGFAILGGPTTPIIGEGDEEAND----------RFVEQL 739 (953)
Q Consensus 670 ~P~vv~~hGg~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~G~~V~~~~~~~~~G~G~~~~~~----------~~~~~~ 739 (953)
.|+||++||..... ..| ......| ..+|.|+.+| .+|+|.+.... ...+..
T Consensus 1371 ~~~vVllHG~~~s~-----------~~w----~~~~~~L-~~~~rVi~~D---l~G~G~S~~~~~~~~~~~~~~~si~~~ 1431 (1655)
T PLN02980 1371 GSVVLFLHGFLGTG-----------EDW----IPIMKAI-SGSARCISID---LPGHGGSKIQNHAKETQTEPTLSVELV 1431 (1655)
T ss_pred CCeEEEECCCCCCH-----------HHH----HHHHHHH-hCCCEEEEEc---CCCCCCCCCccccccccccccCCHHHH
Confidence 57899999953111 111 1122233 4579999954 56777663321 113344
Q ss_pred HHHHHHHHHHHHHcCCCCCCcEEEEEeChHHHHHHHHHHhCCCcccEEEEcccCCCCCCC------------------Cc
Q 002209 740 VACAEAAVEEVVRRGVAHPSKIAVGGHSYGAFMTANLLAHAPHLFCCGIARSGAYNRTLT------------------PF 801 (953)
Q Consensus 740 ~~D~~~~~~~l~~~~~~d~~~i~l~G~S~GG~~a~~~a~~~p~~~~a~v~~~~~~d~~~~------------------~~ 801 (953)
.+++.+.++.+ +.+++.|+||||||.+++.++.++|++++++|++++....... ..
T Consensus 1432 a~~l~~ll~~l------~~~~v~LvGhSmGG~iAl~~A~~~P~~V~~lVlis~~p~~~~~~~~~~~~~~~~~~~~~l~~~ 1505 (1655)
T PLN02980 1432 ADLLYKLIEHI------TPGKVTLVGYSMGARIALYMALRFSDKIEGAVIISGSPGLKDEVARKIRSAKDDSRARMLIDH 1505 (1655)
T ss_pred HHHHHHHHHHh------CCCCEEEEEECHHHHHHHHHHHhChHhhCEEEEECCCCccCchHHHHHHhhhhhHHHHHHHhh
Confidence 44444444332 3468999999999999999999999999999988753211000 00
Q ss_pred Cccc-----ccchhhh-------------------hH----HHHHhc------CcccccCCCCCcEEEEEeCCCCCCCCc
Q 002209 802 GFQN-----EDRTLWE-------------------AT----STYVEM------SPFMSANKLKKPILLVHGEEDNNSGTL 847 (953)
Q Consensus 802 ~~~~-----~~~~~~~-------------------~~----~~~~~~------sp~~~~~~i~~P~Li~~G~~D~~v~~~ 847 (953)
+... .....|. +. ..+... +....+.++++|+|+++|++|..+
T Consensus 1506 g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~dl~~~L~~I~~PtLlI~Ge~D~~~--- 1582 (1655)
T PLN02980 1506 GLEIFLENWYSGELWKSLRNHPHFNKIVASRLLHKDVPSLAKLLSDLSIGRQPSLWEDLKQCDTPLLLVVGEKDVKF--- 1582 (1655)
T ss_pred hHHHHHHHhccHHHhhhhccCHHHHHHHHHHHhcCCHHHHHHHHHHhhhcccchHHHHHhhCCCCEEEEEECCCCcc---
Confidence 0000 0000000 00 000000 011235678899999999999865
Q ss_pred hHHHHHHHHHHHhCC--------CcEEEEEeCCCCccCCCcccHHHHHHHHHHHHHHh
Q 002209 848 TMQSDRFFNALKGHG--------ALCRLVILPFESHGYAARESIMHVLWETDRWLQKY 897 (953)
Q Consensus 848 ~~~~~~~~~~l~~~g--------~~~~~~~~~~~~H~~~~~~~~~~~~~~i~~fl~~~ 897 (953)
+..+.++.+.+.... ..++++++|++||... .++...+.+.+.+||.+.
T Consensus 1583 ~~~a~~~~~~i~~a~~~~~~~~~~~a~lvvI~~aGH~~~-lE~Pe~f~~~I~~FL~~~ 1639 (1655)
T PLN02980 1583 KQIAQKMYREIGKSKESGNDKGKEIIEIVEIPNCGHAVH-LENPLPVIRALRKFLTRL 1639 (1655)
T ss_pred HHHHHHHHHHccccccccccccccceEEEEECCCCCchH-HHCHHHHHHHHHHHHHhc
Confidence 356677776665420 1268999999999874 677788889999999874
No 183
>COG0627 Predicted esterase [General function prediction only]
Probab=98.96 E-value=6.1e-09 Score=110.09 Aligned_cols=145 Identities=20% Similarity=0.206 Sum_probs=100.7
Q ss_pred HcCCCCC--CcEEEEEeChHHHHHHHHHHhCCCcccEEEEcccCCCCC---------CCCcCcccccchhhhhHH-HHHh
Q 002209 752 RRGVAHP--SKIAVGGHSYGAFMTANLLAHAPHLFCCGIARSGAYNRT---------LTPFGFQNEDRTLWEATS-TYVE 819 (953)
Q Consensus 752 ~~~~~d~--~~i~l~G~S~GG~~a~~~a~~~p~~~~a~v~~~~~~d~~---------~~~~~~~~~~~~~~~~~~-~~~~ 819 (953)
+...++. ++.+|+||||||+-|+.+|+++|++|+.+.+.+|+++.. ...++-.......-+... .+.+
T Consensus 143 ~~f~~~~~~~~~aI~G~SMGG~GAl~lA~~~pd~f~~~sS~Sg~~~~s~~~~~~~~~~~~~g~~~~~~~~G~~~~~~w~~ 222 (316)
T COG0627 143 AAFPADGTGDGRAIAGHSMGGYGALKLALKHPDRFKSASSFSGILSPSSPWGPTLAMGDPWGGKAFNAMLGPDSDPAWQE 222 (316)
T ss_pred HhcCcccccCCceeEEEeccchhhhhhhhhCcchhceeccccccccccccccccccccccccCccHHHhcCCCccccccc
Confidence 3334454 389999999999999999999999999999999998865 222222111111111111 3344
Q ss_pred cCcccccCC--------------CCCcEEEEEeCCCCCCCCchHHHHHHHHHHHhCCCcEEEEEeCCCCccCCCcccHHH
Q 002209 820 MSPFMSANK--------------LKKPILLVHGEEDNNSGTLTMQSDRFFNALKGHGALCRLVILPFESHGYAARESIMH 885 (953)
Q Consensus 820 ~sp~~~~~~--------------i~~P~Li~~G~~D~~v~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~H~~~~~~~~~~ 885 (953)
++|...+.+ ...++++-+|..|..........+.+.++++..|.+..+..+++..|.+. ....
T Consensus 223 ~D~~~~~~~l~~~~~~~~~~~~~~~~~~~~d~g~ad~~~~~~~~~~~~~~~a~~~~g~~~~~~~~~~G~Hsw~---~w~~ 299 (316)
T COG0627 223 NDPLSLIEKLVANANTRIWVYGGSPPELLIDNGPADFFLAANNLSTRAFAEALRAAGIPNGVRDQPGGDHSWY---FWAS 299 (316)
T ss_pred cCchhHHHHhhhcccccceecccCCCccccccccchhhhhhcccCHHHHHHHHHhcCCCceeeeCCCCCcCHH---HHHH
Confidence 455444432 44678888999997642002236889999999999999999988899873 3566
Q ss_pred HHHHHHHHHHHhcc
Q 002209 886 VLWETDRWLQKYCV 899 (953)
Q Consensus 886 ~~~~i~~fl~~~l~ 899 (953)
.++.++.|+.+.++
T Consensus 300 ~l~~~~~~~a~~l~ 313 (316)
T COG0627 300 QLADHLPWLAGALG 313 (316)
T ss_pred HHHHHHHHHHHHhc
Confidence 78888999988775
No 184
>PF02897 Peptidase_S9_N: Prolyl oligopeptidase, N-terminal beta-propeller domain; InterPro: IPR004106 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This entry represents the beta-propeller domain found at the N-terminal of prolyl oligopeptidase, including acylamino-acid-releasing enzyme (also known as acylaminoacyl peptidase), which belong to the MEROPS peptidase family S9 (clan SC), subfamily S9A. The prolyl oligopeptidase family consist of a number of evolutionary related peptidases whose catalytic activity seems to be provided by a charge relay system similar to that of the trypsin family of serine proteases, but which evolved by independent convergent evolution. The N-terminal domain of prolyl oligopeptidases form an unusual 7-bladed beta-propeller consisting of seven 4-stranded beta-sheet motifs. Prolyl oligopeptidase is a large cytosolic enzyme involved in the maturation and degradation of peptide hormones and neuropeptides, which relate to the induction of amnesia. The enzyme contains a peptidase domain, where its catalytic triad (Ser554, His680, Asp641) is covered by the central tunnel of the N-terminal beta-propeller domain. In this way, large structured peptides are excluded from the active site, thereby protecting larger peptides and proteins from proteolysis in the cytosol []. The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. Mammalian acylaminoacyl peptidase is an exopeptidase that is a member of the same prolyl oligopeptidase family of serine peptidases. This enzyme removes acylated amino acid residues from the N terminus of oligopeptides [].; GO: 0004252 serine-type endopeptidase activity, 0006508 proteolysis; PDB: 2BKL_B 3DDU_A 1YR2_A 2XE4_A 1VZ3_A 3EQ9_A 1O6F_A 3EQ7_A 4AN0_A 1UOP_A ....
Probab=98.96 E-value=1.2e-07 Score=108.08 Aligned_cols=271 Identities=17% Similarity=0.079 Sum_probs=153.7
Q ss_pred ccceEeccCCCeEEEEEeeccccCCCCcceEEEEECCCCceeecccCCCccccccccceEEecCCeEEEEEecCCCCCCC
Q 002209 191 LNFVTWSQDGKHLAFSIRIDAEDSSSSKLRVWVADVDTGKARPLFQSPDIYLNAIFDNFVWVNNSTLLVCTIPLLRGDPP 270 (953)
Q Consensus 191 ~~~~~wSPDG~~laf~~~~~~~~~~~~~~~l~~~d~~~g~~~~lt~~~~~~~~~~~~~~~wspDg~~l~~~~~~~~~~~~ 270 (953)
.....+||||++|||..+.+ +++...|+++|+++|+...-. ..... ...+.|++||+.|+|+.........
T Consensus 126 ~~~~~~Spdg~~la~~~s~~----G~e~~~l~v~Dl~tg~~l~d~-i~~~~----~~~~~W~~d~~~~~y~~~~~~~~~~ 196 (414)
T PF02897_consen 126 LGGFSVSPDGKRLAYSLSDG----GSEWYTLRVFDLETGKFLPDG-IENPK----FSSVSWSDDGKGFFYTRFDEDQRTS 196 (414)
T ss_dssp EEEEEETTTSSEEEEEEEET----TSSEEEEEEEETTTTEEEEEE-EEEEE----SEEEEECTTSSEEEEEECSTTTSS-
T ss_pred eeeeeECCCCCEEEEEecCC----CCceEEEEEEECCCCcCcCCc-ccccc----cceEEEeCCCCEEEEEEeCcccccc
Confidence 34578999999999988754 777899999999998653211 01110 2249999999999988322211100
Q ss_pred CCCCCCCCCceeecCCCccccchhhhhhcCCcchhhhhhhhccceEEEEEc-CCce--eEeCCC---Cc-ccccccCCCC
Q 002209 271 KKPLVPLGPKMQSNEKRDIIQVRTFQDLLKDEYDEDLFDYYATTQLVLVSL-DGTV--KEIGPP---AV-YTSLDPSPDE 343 (953)
Q Consensus 271 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~l~~~~~-~g~~--~~l~~~---~~-~~~~~~SpDG 343 (953)
.-....++|+..+ ++.. ..|.+. .. ...+..|+||
T Consensus 197 --------------------------------------~~~~~~~v~~~~~gt~~~~d~lvfe~~~~~~~~~~~~~s~d~ 238 (414)
T PF02897_consen 197 --------------------------------------DSGYPRQVYRHKLGTPQSEDELVFEEPDEPFWFVSVSRSKDG 238 (414)
T ss_dssp --------------------------------------CCGCCEEEEEEETTS-GGG-EEEEC-TTCTTSEEEEEE-TTS
T ss_pred --------------------------------------cCCCCcEEEEEECCCChHhCeeEEeecCCCcEEEEEEecCcc
Confidence 0002357888888 5533 345433 22 4578899999
Q ss_pred cEEEEEEecCCccccccCCCCCcceEEEeccCc-----eEEEeccCCCcccCCccccccccCccceeeccCCCCceEEEE
Q 002209 344 KYILISSIHRPYSFIVPCGRFPRQVGVWTTDGI-----FVRELCDLPLAEDIPIAFNSVRKGMRSINWRSDKPSTLYWAE 418 (953)
Q Consensus 344 ~~l~~~~~~~~~~~~~~~~~~~~~i~~~d~~g~-----~~~~l~~~~~~~~~p~~~~~~~~~~~~~~wspDg~~i~~~~~ 418 (953)
++|++.+..... ..++++.+++.+ ..+.+..... +.... ....|..+++.++
T Consensus 239 ~~l~i~~~~~~~---------~s~v~~~d~~~~~~~~~~~~~l~~~~~-------------~~~~~-v~~~~~~~yi~Tn 295 (414)
T PF02897_consen 239 RYLFISSSSGTS---------ESEVYLLDLDDGGSPDAKPKLLSPRED-------------GVEYY-VDHHGDRLYILTN 295 (414)
T ss_dssp SEEEEEEESSSS---------EEEEEEEECCCTTTSS-SEEEEEESSS-------------S-EEE-EEEETTEEEEEE-
T ss_pred cEEEEEEEcccc---------CCeEEEEeccccCCCcCCcEEEeCCCC-------------ceEEE-EEccCCEEEEeeC
Confidence 999988755421 148999999864 4455443211 10111 1112444555443
Q ss_pred eccCCCcccccccCCeEEEEecCCCCCCC---ce-EEeecccccCCeeeccCCceEEEEEecccCceEEEEEcCC-CCCC
Q 002209 419 TQDGGDAKVEVTPRDIIYTQQAEPVQGEG---PE-ILHKLDLRYGGISWCDDSLALVYESWYKTRRTRTWVISPG-SKDV 493 (953)
Q Consensus 419 ~~~~~~~~~~~~~~~~l~~~d~~~~~g~~---~~-~l~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~l~~~d~~-~~~~ 493 (953)
.. ..+..|+.+++ +... .. .+........--.++..+.+|++....+ ...+|+++++. +.
T Consensus 296 ~~---------a~~~~l~~~~l---~~~~~~~~~~~l~~~~~~~~l~~~~~~~~~Lvl~~~~~-~~~~l~v~~~~~~~-- 360 (414)
T PF02897_consen 296 DD---------APNGRLVAVDL---ADPSPAEWWTVLIPEDEDVSLEDVSLFKDYLVLSYREN-GSSRLRVYDLDDGK-- 360 (414)
T ss_dssp TT----------TT-EEEEEET---TSTSGGGEEEEEE--SSSEEEEEEEEETTEEEEEEEET-TEEEEEEEETT-TE--
T ss_pred CC---------CCCcEEEEecc---cccccccceeEEcCCCCceeEEEEEEECCEEEEEEEEC-CccEEEEEECCCCc--
Confidence 11 34568888886 2222 22 3444443323334556677888776655 34789999998 42
Q ss_pred CcEEeecCCCccccCCCCCCCeEeccCCCEEEEEeeeccCCCcEEEEecCCCCCCCCCCeEEEEECCCCceEEEec
Q 002209 494 APRILFDRSSEDVYSDPGSPMMRRTSTGTYVIAKIKKENDEGTYILLNGNGATPEGNIPFLDLFDINTGSKERIWE 569 (953)
Q Consensus 494 ~~~~~~~~~~~~~~~~~~~p~~~~SpDG~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~d~~~~~~~~l~~ 569 (953)
....+.-.....+.+ +...+++..+.|...+. . ..+.+|.+|+++++.+.+..
T Consensus 361 ~~~~~~~p~~g~v~~------~~~~~~~~~~~~~~ss~--------------~---~P~~~y~~d~~t~~~~~~k~ 413 (414)
T PF02897_consen 361 ESREIPLPEAGSVSG------VSGDFDSDELRFSYSSF--------------T---TPPTVYRYDLATGELTLLKQ 413 (414)
T ss_dssp EEEEEESSSSSEEEE------EES-TT-SEEEEEEEET--------------T---EEEEEEEEETTTTCEEEEEE
T ss_pred EEeeecCCcceEEec------cCCCCCCCEEEEEEeCC--------------C---CCCEEEEEECCCCCEEEEEe
Confidence 223333222222221 34456777777776432 2 23459999999999887753
No 185
>KOG0772 consensus Uncharacterized conserved protein, contains WD40 repeat [Function unknown]
Probab=98.96 E-value=5.9e-08 Score=102.72 Aligned_cols=251 Identities=14% Similarity=0.088 Sum_probs=139.2
Q ss_pred ecCCCCCCcceeeeeceEEEEccCCCC-CCceeeeecCCCCCcccceEeccCCCeEEEEEeeccccCCCCcceEEEEECC
Q 002209 149 IDGKCNTRSRMSFYTGIGIHQLFPDGK-LGQEIEIQGFPDGAKLNFVTWSQDGKHLAFSIRIDAEDSSSSKLRVWVADVD 227 (953)
Q Consensus 149 ~~~~~~~~~~~~~~~~i~i~~~~~~g~-~~~~~~l~~~~~~~~~~~~~wSPDG~~laf~~~~~~~~~~~~~~~l~~~d~~ 227 (953)
+++.+......+++..+..||+..=.. ....++|.. .+...+...+|||.|.+|+.+.. ..+.-++|-+
T Consensus 175 ~Dp~GaR~~sGs~Dy~v~~wDf~gMdas~~~fr~l~P-~E~h~i~sl~ys~Tg~~iLvvsg---------~aqakl~DRd 244 (641)
T KOG0772|consen 175 VDPSGARFVSGSLDYTVKFWDFQGMDASMRSFRQLQP-CETHQINSLQYSVTGDQILVVSG---------SAQAKLLDRD 244 (641)
T ss_pred ecCCCceeeeccccceEEEEecccccccchhhhccCc-ccccccceeeecCCCCeEEEEec---------CcceeEEccC
Confidence 444444444444445788999832111 112234421 13337899999999999999763 5566777766
Q ss_pred CCceeecccCCC--------ccccccccceEEecCCeEEEEEecCCCCCCCCCCCCCCCCceeecCCCccccchhhhhhc
Q 002209 228 TGKARPLFQSPD--------IYLNAIFDNFVWVNNSTLLVCTIPLLRGDPPKKPLVPLGPKMQSNEKRDIIQVRTFQDLL 299 (953)
Q Consensus 228 ~g~~~~lt~~~~--------~~~~~~~~~~~wspDg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 299 (953)
|-+......+.. .++.+.+....|.|+.+-.|.+..
T Consensus 245 G~~~~e~~KGDQYI~Dm~nTKGHia~lt~g~whP~~k~~FlT~s------------------------------------ 288 (641)
T KOG0772|consen 245 GFEIVEFSKGDQYIRDMYNTKGHIAELTCGCWHPDNKEEFLTCS------------------------------------ 288 (641)
T ss_pred CceeeeeeccchhhhhhhccCCceeeeeccccccCcccceEEec------------------------------------
Confidence 655433322211 112222446679999987776521
Q ss_pred CCcchhhhhhhhccceEEEEEcCC-ceeEeC---C-C--CcccccccCCCCcEEEEEEecCCccccccCCCCCcceEEEe
Q 002209 300 KDEYDEDLFDYYATTQLVLVSLDG-TVKEIG---P-P--AVYTSLDPSPDEKYILISSIHRPYSFIVPCGRFPRQVGVWT 372 (953)
Q Consensus 300 ~~~~d~~~~~~~~~~~l~~~~~~g-~~~~l~---~-~--~~~~~~~~SpDG~~l~~~~~~~~~~~~~~~~~~~~~i~~~d 372 (953)
.| ++-.||-++-.. ..+.+- . + -.++..+|+|||++||....++ .|.+|+
T Consensus 289 ---~D-------gtlRiWdv~~~k~q~qVik~k~~~g~Rv~~tsC~~nrdg~~iAagc~DG-------------SIQ~W~ 345 (641)
T KOG0772|consen 289 ---YD-------GTLRIWDVNNTKSQLQVIKTKPAGGKRVPVTSCAWNRDGKLIAAGCLDG-------------SIQIWD 345 (641)
T ss_pred ---CC-------CcEEEEecCCchhheeEEeeccCCCcccCceeeecCCCcchhhhcccCC-------------ceeeee
Confidence 11 233444443322 122111 1 1 3467889999999998777443 899999
Q ss_pred ccCceEEEeccCCCcccCCccccccccCccceeeccCCCCceEEEEeccCCCcccccccCCeEEEEecCCCCCCCceEE-
Q 002209 373 TDGIFVRELCDLPLAEDIPIAFNSVRKGMRSINWRSDKPSTLYWAETQDGGDAKVEVTPRDIIYTQQAEPVQGEGPEIL- 451 (953)
Q Consensus 373 ~~g~~~~~l~~~~~~~~~p~~~~~~~~~~~~~~wspDg~~i~~~~~~~~~~~~~~~~~~~~~l~~~d~~~~~g~~~~~l- 451 (953)
..+...+......... .+ ...+..++||+||+.|+-- +..+.+-+||++ +-.++...
T Consensus 346 ~~~~~v~p~~~vk~AH-~~------g~~Itsi~FS~dg~~LlSR-------------g~D~tLKvWDLr--q~kkpL~~~ 403 (641)
T KOG0772|consen 346 KGSRTVRPVMKVKDAH-LP------GQDITSISFSYDGNYLLSR-------------GFDDTLKVWDLR--QFKKPLNVR 403 (641)
T ss_pred cCCcccccceEeeecc-CC------CCceeEEEeccccchhhhc-------------cCCCceeeeecc--ccccchhhh
Confidence 8533222211110000 00 0245789999999977654 556788899972 11221111
Q ss_pred eec--ccccCCeeeccCCceEEEEEecc--cCceEEEEEcCCC
Q 002209 452 HKL--DLRYGGISWCDDSLALVYESWYK--TRRTRTWVISPGS 490 (953)
Q Consensus 452 ~~~--~~~~~~~~~SpDg~~l~~~~~~~--~~~~~l~~~d~~~ 490 (953)
+.. ...-....||||.+.|+...... .....|+.++..+
T Consensus 404 tgL~t~~~~tdc~FSPd~kli~TGtS~~~~~~~g~L~f~d~~t 446 (641)
T KOG0772|consen 404 TGLPTPFPGTDCCFSPDDKLILTGTSAPNGMTAGTLFFFDRMT 446 (641)
T ss_pred cCCCccCCCCccccCCCceEEEecccccCCCCCceEEEEeccc
Confidence 111 22234578999999888765321 1223688888665
No 186
>PF10282 Lactonase: Lactonase, 7-bladed beta-propeller; InterPro: IPR019405 6-phosphogluconolactonases (6PGL) 3.1.1.31 from EC, which hydrolyses 6-phosphogluconolactone to 6-phosphogluconate is opne of the enzymes in the pentose phosphate pathway. Two families of structurally dissimilar 6PGLs are known to exist: the Escherichia coli (strain K12) YbhE IPR022528 from INTERPRO [] and the Pseudomonas aeruginosa DevB IPR005900 from INTERPRO [] types. This entry contains bacterial 6-phosphogluconolactonases (6PGL) YbhE-type 3.1.1.31 from EC which hydrolyse 6-phosphogluconolactone to 6-phosphogluconate. The entry also contains the fungal muconate lactonizing enzyme carboxy-cis,cis-muconate cyclase 5.5.1.5 from EC and muconate cycloisomerase 5.5.1.1 from EC, which convert cis,cis-muconates to muconolactones and vice versa as part of the microbial beta-ketoadipate pathway. Structures have been reported for the E. coli 6-phosphogluconolactonase and Neurospora crassa muconate cycloisomerase. Structures of proteins in this family have revealed a 7-bladed beta-propeller fold [].; PDB: 3SCY_A 1L0Q_A 3HFQ_B 3FGB_A 1RI6_A 3U4Y_A 3BWS_A 1JOF_H.
Probab=98.95 E-value=4.1e-07 Score=100.30 Aligned_cols=267 Identities=15% Similarity=0.191 Sum_probs=145.3
Q ss_pred CCCCCCceecCCCCEEEEEecCCCCCccccccccceeceEEecCCCCCCcceeeeeceEEEEccCCCCCCceeeeecCC-
Q 002209 108 APPLPALSFSPQRDKILFLKRRALPPLEELARPEEKLAGLRIDGKCNTRSRMSFYTGIGIHQLFPDGKLGQEIEIQGFP- 186 (953)
Q Consensus 108 ~~~~~~~~~SPDG~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~i~~~~~~g~~~~~~~l~~~~- 186 (953)
....+.+.+|||+++|..+... .... +.|..+.+..+. +..+.+...+
T Consensus 36 ~~~Ps~l~~~~~~~~LY~~~e~-----------------------~~~~------g~v~~~~i~~~~--g~L~~~~~~~~ 84 (345)
T PF10282_consen 36 GENPSWLAVSPDGRRLYVVNEG-----------------------SGDS------GGVSSYRIDPDT--GTLTLLNSVPS 84 (345)
T ss_dssp SSSECCEEE-TTSSEEEEEETT-----------------------SSTT------TEEEEEEEETTT--TEEEEEEEEEE
T ss_pred CCCCceEEEEeCCCEEEEEEcc-----------------------ccCC------CCEEEEEECCCc--ceeEEeeeecc
Confidence 3356688999999887666552 0011 244555554441 2222222222
Q ss_pred CCCcccceEeccCCCeEEEEEeeccccCCCCcceEEEEECCC-Cceeec---ccC----CC--ccccccccceEEecCCe
Q 002209 187 DGAKLNFVTWSQDGKHLAFSIRIDAEDSSSSKLRVWVADVDT-GKARPL---FQS----PD--IYLNAIFDNFVWVNNST 256 (953)
Q Consensus 187 ~~~~~~~~~wSPDG~~laf~~~~~~~~~~~~~~~l~~~d~~~-g~~~~l---t~~----~~--~~~~~~~~~~~wspDg~ 256 (953)
.+....+...+|||++|+.+.- . ...+.+++++. |..... ... +. .........+.++|||+
T Consensus 85 ~g~~p~~i~~~~~g~~l~vany------~--~g~v~v~~l~~~g~l~~~~~~~~~~g~g~~~~rq~~~h~H~v~~~pdg~ 156 (345)
T PF10282_consen 85 GGSSPCHIAVDPDGRFLYVANY------G--GGSVSVFPLDDDGSLGEVVQTVRHEGSGPNPDRQEGPHPHQVVFSPDGR 156 (345)
T ss_dssp SSSCEEEEEECTTSSEEEEEET------T--TTEEEEEEECTTSEEEEEEEEEESEEEESSTTTTSSTCEEEEEE-TTSS
T ss_pred CCCCcEEEEEecCCCEEEEEEc------c--CCeEEEEEccCCcccceeeeecccCCCCCcccccccccceeEEECCCCC
Confidence 3345677899999998877542 2 44555555543 443332 111 00 00011134788999999
Q ss_pred EEEEEecCCCCCCCCCCCCCCCCceeecCCCccccchhhhhhcCCcchhhhhhhhccceEEEEEc-CC--ceeE-----e
Q 002209 257 LLVCTIPLLRGDPPKKPLVPLGPKMQSNEKRDIIQVRTFQDLLKDEYDEDLFDYYATTQLVLVSL-DG--TVKE-----I 328 (953)
Q Consensus 257 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~l~~~~~-~g--~~~~-----l 328 (953)
++++.. .+...|+++++ .+ +... +
T Consensus 157 ~v~v~d------------------------------------------------lG~D~v~~~~~~~~~~~l~~~~~~~~ 188 (345)
T PF10282_consen 157 FVYVPD------------------------------------------------LGADRVYVYDIDDDTGKLTPVDSIKV 188 (345)
T ss_dssp EEEEEE------------------------------------------------TTTTEEEEEEE-TTS-TEEEEEEEEC
T ss_pred EEEEEe------------------------------------------------cCCCEEEEEEEeCCCceEEEeecccc
Confidence 998761 03456777777 32 2322 2
Q ss_pred CCCCcccccccCCCCcEEEEEEecCCccccccCCCCCcceEEEecc--CceEEEeccCCCcccCCccccccccCccceee
Q 002209 329 GPPAVYTSLDPSPDEKYILISSIHRPYSFIVPCGRFPRQVGVWTTD--GIFVRELCDLPLAEDIPIAFNSVRKGMRSINW 406 (953)
Q Consensus 329 ~~~~~~~~~~~SpDG~~l~~~~~~~~~~~~~~~~~~~~~i~~~d~~--g~~~~~l~~~~~~~~~p~~~~~~~~~~~~~~w 406 (953)
..+.+.+.+.|+|||+++++... ....|.+++++ .+..+.+...+.. |..+.+. .....+++
T Consensus 189 ~~G~GPRh~~f~pdg~~~Yv~~e------------~s~~v~v~~~~~~~g~~~~~~~~~~~---~~~~~~~-~~~~~i~i 252 (345)
T PF10282_consen 189 PPGSGPRHLAFSPDGKYAYVVNE------------LSNTVSVFDYDPSDGSLTEIQTISTL---PEGFTGE-NAPAEIAI 252 (345)
T ss_dssp STTSSEEEEEE-TTSSEEEEEET------------TTTEEEEEEEETTTTEEEEEEEEESC---ETTSCSS-SSEEEEEE
T ss_pred ccCCCCcEEEEcCCcCEEEEecC------------CCCcEEEEeecccCCceeEEEEeeec---ccccccc-CCceeEEE
Confidence 23367788999999998877752 23478888777 5554444332211 1111111 13456899
Q ss_pred ccCCCCceEEEEeccCCCcccccccCCeEEEEecCCCCCCCceEEee--c-ccccCCeeeccCCceEEEEEecccCceEE
Q 002209 407 RSDKPSTLYWAETQDGGDAKVEVTPRDIIYTQQAEPVQGEGPEILHK--L-DLRYGGISWCDDSLALVYESWYKTRRTRT 483 (953)
Q Consensus 407 spDg~~i~~~~~~~~~~~~~~~~~~~~~l~~~d~~~~~g~~~~~l~~--~-~~~~~~~~~SpDg~~l~~~~~~~~~~~~l 483 (953)
||||+.++.. ++ ..+.|.++++++ .++..+.+.. . ......+.++|||++|+.+... .....+
T Consensus 253 spdg~~lyvs-nr-----------~~~sI~vf~~d~-~~g~l~~~~~~~~~G~~Pr~~~~s~~g~~l~Va~~~-s~~v~v 318 (345)
T PF10282_consen 253 SPDGRFLYVS-NR-----------GSNSISVFDLDP-ATGTLTLVQTVPTGGKFPRHFAFSPDGRYLYVANQD-SNTVSV 318 (345)
T ss_dssp -TTSSEEEEE-EC-----------TTTEEEEEEECT-TTTTEEEEEEEEESSSSEEEEEE-TTSSEEEEEETT-TTEEEE
T ss_pred ecCCCEEEEE-ec-----------cCCEEEEEEEec-CCCceEEEEEEeCCCCCccEEEEeCCCCEEEEEecC-CCeEEE
Confidence 9999865443 22 245677777522 3345554422 1 2224678999999998887543 343567
Q ss_pred EEEcCCCC
Q 002209 484 WVISPGSK 491 (953)
Q Consensus 484 ~~~d~~~~ 491 (953)
|.+|.++|
T Consensus 319 f~~d~~tG 326 (345)
T PF10282_consen 319 FDIDPDTG 326 (345)
T ss_dssp EEEETTTT
T ss_pred EEEeCCCC
Confidence 77777775
No 187
>KOG2096 consensus WD40 repeat protein [General function prediction only]
Probab=98.95 E-value=1.2e-07 Score=94.65 Aligned_cols=195 Identities=13% Similarity=0.079 Sum_probs=110.3
Q ss_pred cccccCCCCcEEEEEEecCCccccccCCCCCcceEEEeccCceEEEeccCCCcccCCccccccccCccceeeccCCCCce
Q 002209 335 TSLDPSPDEKYILISSIHRPYSFIVPCGRFPRQVGVWTTDGIFVRELCDLPLAEDIPIAFNSVRKGMRSINWRSDKPSTL 414 (953)
Q Consensus 335 ~~~~~SpDG~~l~~~~~~~~~~~~~~~~~~~~~i~~~d~~g~~~~~l~~~~~~~~~p~~~~~~~~~~~~~~wspDg~~i~ 414 (953)
.++-..-.+++|+..+.+. +|.+|++.|.....+...... ....+.||||+.|+
T Consensus 191 i~iGiA~~~k~imsas~dt-------------~i~lw~lkGq~L~~idtnq~~-------------n~~aavSP~GRFia 244 (420)
T KOG2096|consen 191 INIGIAGNAKYIMSASLDT-------------KICLWDLKGQLLQSIDTNQSS-------------NYDAAVSPDGRFIA 244 (420)
T ss_pred EEEeecCCceEEEEecCCC-------------cEEEEecCCceeeeecccccc-------------ccceeeCCCCcEEE
Confidence 3455566788888777554 899999998776666553322 13567999999777
Q ss_pred EEEEeccCCCcccccccCCeEEEEecCCCCCCCc------eEEeecccccCCeeeccCCceEEEEEecccCceEEEEEcC
Q 002209 415 YWAETQDGGDAKVEVTPRDIIYTQQAEPVQGEGP------EILHKLDLRYGGISWCDDSLALVYESWYKTRRTRTWVISP 488 (953)
Q Consensus 415 ~~~~~~~~~~~~~~~~~~~~l~~~d~~~~~g~~~------~~l~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~l~~~d~ 488 (953)
.. .-...+.+|...-...|+. -.|..+...+..++||+++++++..+.++ ..+||-.|.
T Consensus 245 ~~-------------gFTpDVkVwE~~f~kdG~fqev~rvf~LkGH~saV~~~aFsn~S~r~vtvSkDG--~wriwdtdV 309 (420)
T KOG2096|consen 245 VS-------------GFTPDVKVWEPIFTKDGTFQEVKRVFSLKGHQSAVLAAAFSNSSTRAVTVSKDG--KWRIWDTDV 309 (420)
T ss_pred Ee-------------cCCCCceEEEEEeccCcchhhhhhhheeccchhheeeeeeCCCcceeEEEecCC--cEEEeeccc
Confidence 65 1122233333100111222 22455566677899999999999887654 358988776
Q ss_pred CCCC-CCcEEeecCCCccccCCCCCC-CeEeccCCCEEEEEeeeccCCCcEEEEecCCCCCCCCCCeEEEEECCCCceEE
Q 002209 489 GSKD-VAPRILFDRSSEDVYSDPGSP-MMRRTSTGTYVIAKIKKENDEGTYILLNGNGATPEGNIPFLDLFDINTGSKER 566 (953)
Q Consensus 489 ~~~~-~~~~~~~~~~~~~~~~~~~~p-~~~~SpDG~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~d~~~~~~~~ 566 (953)
.-.. ..+..+-..+...-. ..++| .+..||.|+.|+..... .|.++...+|+...
T Consensus 310 rY~~~qDpk~Lk~g~~pl~a-ag~~p~RL~lsP~g~~lA~s~gs----------------------~l~~~~se~g~~~~ 366 (420)
T KOG2096|consen 310 RYEAGQDPKILKEGSAPLHA-AGSEPVRLELSPSGDSLAVSFGS----------------------DLKVFASEDGKDYP 366 (420)
T ss_pred eEecCCCchHhhcCCcchhh-cCCCceEEEeCCCCcEEEeecCC----------------------ceEEEEcccCccch
Confidence 4321 123333222111000 01222 27789999998877621 27777776665432
Q ss_pred EeccCcccceeeeEeeccCCccccccccCCEEEEEEe
Q 002209 567 IWESDKEKYYETTVALMSDQTEGDLYLNQLKILTSKE 603 (953)
Q Consensus 567 l~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~ 603 (953)
-...--. +... ..+|++||++++....
T Consensus 367 ~~e~~h~---~~Is-------~is~~~~g~~~atcGd 393 (420)
T KOG2096|consen 367 ELEDIHS---TTIS-------SISYSSDGKYIATCGD 393 (420)
T ss_pred hHHHhhc---Ccee-------eEEecCCCcEEeeecc
Confidence 2111100 0111 2578999998875433
No 188
>KOG0296 consensus Angio-associated migratory cell protein (contains WD40 repeats) [Function unknown]
Probab=98.95 E-value=6.6e-07 Score=91.29 Aligned_cols=290 Identities=13% Similarity=0.097 Sum_probs=165.6
Q ss_pred CCCCceecCCCCEEEEEecCCCCCccccccccceeceEEecCCCCCCcceeeeeceEEEEccCCCCCCceeeeecCCCCC
Q 002209 110 PLPALSFSPQRDKILFLKRRALPPLEELARPEEKLAGLRIDGKCNTRSRMSFYTGIGIHQLFPDGKLGQEIEIQGFPDGA 189 (953)
Q Consensus 110 ~~~~~~~SPDG~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~i~~~~~~g~~~~~~~l~~~~~~~ 189 (953)
.+..++++|+-.++|....+ .. -+||++.+ | ...-.++++. .
T Consensus 66 svFavsl~P~~~l~aTGGgD-------------------------D~--------AflW~~~~-g--e~~~eltgHK--D 107 (399)
T KOG0296|consen 66 SVFAVSLHPNNNLVATGGGD-------------------------DL--------AFLWDIST-G--EFAGELTGHK--D 107 (399)
T ss_pred ceEEEEeCCCCceEEecCCC-------------------------ce--------EEEEEccC-C--cceeEecCCC--C
Confidence 56678889977777665543 22 38999853 3 2344555544 3
Q ss_pred cccceEeccCCCeEEEEEeeccccCCCCcceEEEEECCCCceeecccCCCccccccccceEEecCCeEEEEEecCCCCCC
Q 002209 190 KLNFVTWSQDGKHLAFSIRIDAEDSSSSKLRVWVADVDTGKARPLFQSPDIYLNAIFDNFVWVNNSTLLVCTIPLLRGDP 269 (953)
Q Consensus 190 ~~~~~~wSPDG~~laf~~~~~~~~~~~~~~~l~~~d~~~g~~~~lt~~~~~~~~~~~~~~~wspDg~~l~~~~~~~~~~~ 269 (953)
.+....||-||..||. ++-...|.++...+|..+.....+... +.-+.|.|-+.+|++..
T Consensus 108 SVt~~~FshdgtlLAT---------GdmsG~v~v~~~stg~~~~~~~~e~~d----ieWl~WHp~a~illAG~------- 167 (399)
T KOG0296|consen 108 SVTCCSFSHDGTLLAT---------GDMSGKVLVFKVSTGGEQWKLDQEVED----IEWLKWHPRAHILLAGS------- 167 (399)
T ss_pred ceEEEEEccCceEEEe---------cCCCccEEEEEcccCceEEEeecccCc----eEEEEecccccEEEeec-------
Confidence 6999999999999987 444556777777666554333222221 66788999888888661
Q ss_pred CCCCCCCCCCceeecCCCccccchhhhhhcCCcchhhhhhhhccceEEEEEc-C-CceeEeCCC-CcccccccCCCCcEE
Q 002209 270 PKKPLVPLGPKMQSNEKRDIIQVRTFQDLLKDEYDEDLFDYYATTQLVLVSL-D-GTVKEIGPP-AVYTSLDPSPDEKYI 346 (953)
Q Consensus 270 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~l~~~~~-~-g~~~~l~~~-~~~~~~~~SpDG~~l 346 (953)
..+.+|.+.+ + +..+.+..+ ...+.-.|.||||+|
T Consensus 168 ------------------------------------------~DGsvWmw~ip~~~~~kv~~Gh~~~ct~G~f~pdGKr~ 205 (399)
T KOG0296|consen 168 ------------------------------------------TDGSVWMWQIPSQALCKVMSGHNSPCTCGEFIPDGKRI 205 (399)
T ss_pred ------------------------------------------CCCcEEEEECCCcceeeEecCCCCCcccccccCCCceE
Confidence 3357888888 6 444545444 667777899999999
Q ss_pred EEEEecCCccccccCCCCCcceEEEeccCceE-EEeccCCCcccCCcccccc----ccC--ccceeeccCCCCceEEEEe
Q 002209 347 LISSIHRPYSFIVPCGRFPRQVGVWTTDGIFV-RELCDLPLAEDIPIAFNSV----RKG--MRSINWRSDKPSTLYWAET 419 (953)
Q Consensus 347 ~~~~~~~~~~~~~~~~~~~~~i~~~d~~g~~~-~~l~~~~~~~~~p~~~~~~----~~~--~~~~~wspDg~~i~~~~~~ 419 (953)
+....+. .|.+|+..++.+ -.++........+..++.. ..+ -..+.+...+..-+.....
T Consensus 206 ~tgy~dg-------------ti~~Wn~ktg~p~~~~~~~e~~~~~~~~~~~~~~~~~~g~~e~~~~~~~~~sgKVv~~~n 272 (399)
T KOG0296|consen 206 LTGYDDG-------------TIIVWNPKTGQPLHKITQAEGLELPCISLNLAGSTLTKGNSEGVACGVNNGSGKVVNCNN 272 (399)
T ss_pred EEEecCc-------------eEEEEecCCCceeEEecccccCcCCccccccccceeEeccCCccEEEEccccceEEEecC
Confidence 9887443 899999986543 3344221111111111100 000 0011111111111111000
Q ss_pred ---------ccCCCcc-------------cccccCCeEEEEecCCCCCCCceEEeecccccCCeeeccCCceEEEEEecc
Q 002209 420 ---------QDGGDAK-------------VEVTPRDIIYTQQAEPVQGEGPEILHKLDLRYGGISWCDDSLALVYESWYK 477 (953)
Q Consensus 420 ---------~~~~~~~-------------~~~~~~~~l~~~d~~~~~g~~~~~l~~~~~~~~~~~~SpDg~~l~~~~~~~ 477 (953)
.+..... .-.+-.+.|.+||+ ...+.|.+-.++..+..+.|-+ ..+|+.+.-..
T Consensus 273 ~~~~~l~~~~e~~~esve~~~~ss~lpL~A~G~vdG~i~iyD~---a~~~~R~~c~he~~V~~l~w~~-t~~l~t~c~~g 348 (399)
T KOG0296|consen 273 GTVPELKPSQEELDESVESIPSSSKLPLAACGSVDGTIAIYDL---AASTLRHICEHEDGVTKLKWLN-TDYLLTACANG 348 (399)
T ss_pred CCCccccccchhhhhhhhhcccccccchhhcccccceEEEEec---ccchhheeccCCCceEEEEEcC-cchheeeccCc
Confidence 0000000 01122457888885 4455566656666678889988 56666554322
Q ss_pred cCceEEEEEcCCCCCCCcEEeecCCCccccCCCCCCCeEeccCCCEEEEEe
Q 002209 478 TRRTRTWVISPGSKDVAPRILFDRSSEDVYSDPGSPMMRRTSTGTYVIAKI 528 (953)
Q Consensus 478 ~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~SpDG~~l~~~~ 528 (953)
.++.+|..+| ..+.....+...++. ++.+||++.++..+
T Consensus 349 ----~v~~wDaRtG--~l~~~y~GH~~~Il~------f~ls~~~~~vvT~s 387 (399)
T KOG0296|consen 349 ----KVRQWDARTG--QLKFTYTGHQMGILD------FALSPQKRLVVTVS 387 (399)
T ss_pred ----eEEeeecccc--ceEEEEecCchheeE------EEEcCCCcEEEEec
Confidence 5777787775 334444444444444 77899998887765
No 189
>KOG2984 consensus Predicted hydrolase [General function prediction only]
Probab=98.94 E-value=1.7e-09 Score=100.80 Aligned_cols=172 Identities=20% Similarity=0.223 Sum_probs=109.1
Q ss_pred CcEEEEcCCCCCCCCCChhhhhh-h-HHHHHHHHHHHHHHHHHcCCCCCCcEEEEEeChHHHHHHHHHHhCCCcccEEEE
Q 002209 712 GFAILGGPTTPIIGEGDEEANDR-F-VEQLVACAEAAVEEVVRRGVAHPSKIAVGGHSYGAFMTANLLAHAPHLFCCGIA 789 (953)
Q Consensus 712 G~~V~~~~~~~~~G~G~~~~~~~-~-~~~~~~D~~~~~~~l~~~~~~d~~~i~l~G~S~GG~~a~~~a~~~p~~~~a~v~ 789 (953)
-+.|++ .|-.|||.|-.++. + .+-...|...+++.+.... -+++.|+|+|-||..|+.+|+++++.+...|.
T Consensus 71 ~~Tiva---wDPpGYG~SrPP~Rkf~~~ff~~Da~~avdLM~aLk---~~~fsvlGWSdGgiTalivAak~~e~v~rmii 144 (277)
T KOG2984|consen 71 QVTIVA---WDPPGYGTSRPPERKFEVQFFMKDAEYAVDLMEALK---LEPFSVLGWSDGGITALIVAAKGKEKVNRMII 144 (277)
T ss_pred ceEEEE---ECCCCCCCCCCCcccchHHHHHHhHHHHHHHHHHhC---CCCeeEeeecCCCeEEEEeeccChhhhhhhee
Confidence 488888 45578888855432 2 3344678888888887764 57999999999999999999999987766666
Q ss_pred cccCCCCCCC-CcC---------ccccc-------------chhhhh----HHHHHhcCc----ccccCCCCCcEEEEEe
Q 002209 790 RSGAYNRTLT-PFG---------FQNED-------------RTLWEA----TSTYVEMSP----FMSANKLKKPILLVHG 838 (953)
Q Consensus 790 ~~~~~d~~~~-~~~---------~~~~~-------------~~~~~~----~~~~~~~sp----~~~~~~i~~P~Li~~G 838 (953)
..+..-.... ... +.... ...|+. ...+...-- ...+.++++|+||+||
T Consensus 145 wga~ayvn~~~~ma~kgiRdv~kWs~r~R~P~e~~Yg~e~f~~~wa~wvD~v~qf~~~~dG~fCr~~lp~vkcPtli~hG 224 (277)
T KOG2984|consen 145 WGAAAYVNHLGAMAFKGIRDVNKWSARGRQPYEDHYGPETFRTQWAAWVDVVDQFHSFCDGRFCRLVLPQVKCPTLIMHG 224 (277)
T ss_pred ecccceecchhHHHHhchHHHhhhhhhhcchHHHhcCHHHHHHHHHHHHHHHHHHhhcCCCchHhhhcccccCCeeEeeC
Confidence 5542110000 000 00011 111211 011111100 1235678999999999
Q ss_pred CCCCCCCCchHHHHHHHHHHHhCCCcEEEEEeCCCCccCCCcccHHHHHHHHHHHHHH
Q 002209 839 EEDNNSGTLTMQSDRFFNALKGHGALCRLVILPFESHGYAARESIMHVLWETDRWLQK 896 (953)
Q Consensus 839 ~~D~~v~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~H~~~~~~~~~~~~~~i~~fl~~ 896 (953)
..|+.|+ -.+.- +...++.. .++.++|.++|.+. -...+++...+.+||+.
T Consensus 225 ~kDp~~~--~~hv~-fi~~~~~~---a~~~~~peGkHn~h-Lrya~eFnklv~dFl~~ 275 (277)
T KOG2984|consen 225 GKDPFCG--DPHVC-FIPVLKSL---AKVEIHPEGKHNFH-LRYAKEFNKLVLDFLKS 275 (277)
T ss_pred CcCCCCC--CCCcc-chhhhccc---ceEEEccCCCccee-eechHHHHHHHHHHHhc
Confidence 9999997 44443 33333332 48889999999985 44556777888888864
No 190
>KOG4497 consensus Uncharacterized conserved protein WDR8, contains WD repeats [General function prediction only]
Probab=98.94 E-value=5.1e-09 Score=104.56 Aligned_cols=216 Identities=19% Similarity=0.235 Sum_probs=133.0
Q ss_pred ceEeccCCCeEEEEEeeccccCCCCcceEEEEECCCCceeecccCCCccccccccceEEecCCeEEEEEecCCCCCCCCC
Q 002209 193 FVTWSQDGKHLAFSIRIDAEDSSSSKLRVWVADVDTGKARPLFQSPDIYLNAIFDNFVWVNNSTLLVCTIPLLRGDPPKK 272 (953)
Q Consensus 193 ~~~wSPDG~~laf~~~~~~~~~~~~~~~l~~~d~~~g~~~~lt~~~~~~~~~~~~~~~wspDg~~l~~~~~~~~~~~~~~ 272 (953)
.-.|||+|++||... +.+|.+.|.++-+..+|...-+. +.-+.|+.|.-.|.+..
T Consensus 13 ~c~fSp~g~yiAs~~----------~yrlviRd~~tlq~~qlf~cldk-----i~yieW~ads~~ilC~~---------- 67 (447)
T KOG4497|consen 13 FCSFSPCGNYIASLS----------RYRLVIRDSETLQLHQLFLCLDK-----IVYIEWKADSCHILCVA---------- 67 (447)
T ss_pred ceeECCCCCeeeeee----------eeEEEEeccchhhHHHHHHHHHH-----hhheeeeccceeeeeee----------
Confidence 468999999999976 45889999888777666543222 55788999998888761
Q ss_pred CCCCCCCceeecCCCccccchhhhhhcCCcchhhhhhhhccceEEEEEc-CCc-eeEeCCC-CcccccccCCCCcEEEEE
Q 002209 273 PLVPLGPKMQSNEKRDIIQVRTFQDLLKDEYDEDLFDYYATTQLVLVSL-DGT-VKEIGPP-AVYTSLDPSPDEKYILIS 349 (953)
Q Consensus 273 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~l~~~~~-~g~-~~~l~~~-~~~~~~~~SpDG~~l~~~ 349 (953)
|....+.++++ .-+ .-.|.++ ++.....|||||++|+.+
T Consensus 68 --------------------------------------yk~~~vqvwsl~Qpew~ckIdeg~agls~~~WSPdgrhiL~t 109 (447)
T KOG4497|consen 68 --------------------------------------YKDPKVQVWSLVQPEWYCKIDEGQAGLSSISWSPDGRHILLT 109 (447)
T ss_pred --------------------------------------eccceEEEEEeecceeEEEeccCCCcceeeeECCCcceEeee
Confidence 12234555565 222 2344455 788899999999999988
Q ss_pred EecCCccccccCCCCCcceEEEeccCceEEEeccCCCcccCCccccccccCccceeeccCCCCceEEEEeccCCCccccc
Q 002209 350 SIHRPYSFIVPCGRFPRQVGVWTTDGIFVRELCDLPLAEDIPIAFNSVRKGMRSINWRSDKPSTLYWAETQDGGDAKVEV 429 (953)
Q Consensus 350 ~~~~~~~~~~~~~~~~~~i~~~d~~g~~~~~l~~~~~~~~~p~~~~~~~~~~~~~~wspDg~~i~~~~~~~~~~~~~~~~ 429 (953)
+ +|.-.|.+|.+.+.....+.... .+...++|.|||+..+.... .|-.++
T Consensus 110 s------------eF~lriTVWSL~t~~~~~~~~pK-------------~~~kg~~f~~dg~f~ai~sR-rDCkdy---- 159 (447)
T KOG4497|consen 110 S------------EFDLRITVWSLNTQKGYLLPHPK-------------TNVKGYAFHPDGQFCAILSR-RDCKDY---- 159 (447)
T ss_pred e------------cceeEEEEEEeccceeEEecccc-------------cCceeEEECCCCceeeeeec-ccHHHH----
Confidence 7 34558999999876655544322 34467899999996665522 222211
Q ss_pred ccCCeEEEEecCCCCCCCceEEeecccccCCeeeccCCceEEEEEecccCceEEEEEcCCCCCCCcEEeecCCCccccCC
Q 002209 430 TPRDIIYTQQAEPVQGEGPEILHKLDLRYGGISWCDDSLALVYESWYKTRRTRTWVISPGSKDVAPRILFDRSSEDVYSD 509 (953)
Q Consensus 430 ~~~~~l~~~d~~~~~g~~~~~l~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~ 509 (953)
-+|..... =.-.+...-...+..++.|||||..|+.-.+ --...+|.+.-..| ..+
T Consensus 160 ---v~i~~c~~----W~ll~~f~~dT~DltgieWsPdg~~laVwd~--~Leykv~aYe~~lG-----~k~---------- 215 (447)
T KOG4497|consen 160 ---VQISSCKA----WILLKEFKLDTIDLTGIEWSPDGNWLAVWDN--VLEYKVYAYERGLG-----LKF---------- 215 (447)
T ss_pred ---HHHHhhHH----HHHHHhcCCCcccccCceECCCCcEEEEecc--hhhheeeeeeeccc-----eeE----------
Confidence 01110000 0000001112234567899999999886432 22335665554333 001
Q ss_pred CCCCCeEeccCCCEEEEEeee
Q 002209 510 PGSPMMRRTSTGTYVIAKIKK 530 (953)
Q Consensus 510 ~~~p~~~~SpDG~~l~~~~~~ 530 (953)
+.|||-|++|+..+.+
T Consensus 216 -----v~wsP~~qflavGsyD 231 (447)
T KOG4497|consen 216 -----VEWSPCNQFLAVGSYD 231 (447)
T ss_pred -----EEeccccceEEeeccc
Confidence 6788888888877654
No 191
>PF08538 DUF1749: Protein of unknown function (DUF1749); InterPro: IPR013744 This is a plant and fungal family of unknown function. This family contains many hypothetical proteins. ; PDB: 2Q0X_B.
Probab=98.93 E-value=9e-09 Score=105.99 Aligned_cols=185 Identities=16% Similarity=0.116 Sum_probs=75.4
Q ss_pred hHHHHHHHcCcEEEEcCCCC-CCCCCChhhhhhhHHHHHHHHHHHHHHHHHcC--CCCCCcEEEEEeChHHHHHHHHHHh
Q 002209 703 TSVLLWLARGFAILGGPTTP-IIGEGDEEANDRFVEQLVACAEAAVEEVVRRG--VAHPSKIAVGGHSYGAFMTANLLAH 779 (953)
Q Consensus 703 ~~~~~la~~G~~V~~~~~~~-~~G~G~~~~~~~~~~~~~~D~~~~~~~l~~~~--~~d~~~i~l~G~S~GG~~a~~~a~~ 779 (953)
..+..|...||.|+.+.... +.|+|.+ ...+.++|+.++++||+... .-..++|.|+|||-|-.-++.++.+
T Consensus 54 ~La~aL~~~~wsl~q~~LsSSy~G~G~~-----SL~~D~~eI~~~v~ylr~~~~g~~~~~kIVLmGHSTGcQdvl~Yl~~ 128 (303)
T PF08538_consen 54 DLAEALEETGWSLFQVQLSSSYSGWGTS-----SLDRDVEEIAQLVEYLRSEKGGHFGREKIVLMGHSTGCQDVLHYLSS 128 (303)
T ss_dssp HHHHHHT-TT-EEEEE--GGGBTTS-S-------HHHHHHHHHHHHHHHHHHS------S-EEEEEECCHHHHHHHHHHH
T ss_pred HHHHHhccCCeEEEEEEecCccCCcCcc-----hhhhHHHHHHHHHHHHHHhhccccCCccEEEEecCCCcHHHHHHHhc
Confidence 34455556799999865543 4566654 35778999999999998873 1246799999999999999999986
Q ss_pred CC-----CcccEEEEcccCCCCCCCCcCccc-c-cc-------------------------hhh-----hhH--------
Q 002209 780 AP-----HLFCCGIARSGAYNRTLTPFGFQN-E-DR-------------------------TLW-----EAT-------- 814 (953)
Q Consensus 780 ~p-----~~~~a~v~~~~~~d~~~~~~~~~~-~-~~-------------------------~~~-----~~~-------- 814 (953)
.. ..+.++|+.+|++|++........ . .. ..+ ...
T Consensus 129 ~~~~~~~~~VdG~ILQApVSDREa~~~~~~~~~~~~~~v~~A~~~i~~g~~~~~lp~~~~~~~~~~~PiTA~Rf~SL~s~ 208 (303)
T PF08538_consen 129 PNPSPSRPPVDGAILQAPVSDREAILNFLGEREAYEELVALAKELIAEGKGDEILPREFTPLVFYDTPITAYRFLSLASP 208 (303)
T ss_dssp -TT---CCCEEEEEEEEE---TTSTTTSHHH---HHHHHHHHHHHHHCT-TT-GG----GGTTT-SS---HHHHHT-S-S
T ss_pred cCccccccceEEEEEeCCCCChhHhhhcccchHHHHHHHHHHHHHHHcCCCCceeeccccccccCCCcccHHHHHhccCC
Confidence 53 469999999999997665433211 0 00 000 000
Q ss_pred ---HHHHhc-----CcccccCCCCCcEEEEEeCCCCCCCCchHH-HHHHHHHHHhCCC----cEEEEEeCCCCccCCCcc
Q 002209 815 ---STYVEM-----SPFMSANKLKKPILLVHGEEDNNSGTLTMQ-SDRFFNALKGHGA----LCRLVILPFESHGYAARE 881 (953)
Q Consensus 815 ---~~~~~~-----sp~~~~~~i~~P~Li~~G~~D~~v~~~~~~-~~~~~~~l~~~g~----~~~~~~~~~~~H~~~~~~ 881 (953)
+.|... .......++..|+|++.+.+|+.|| ... -.++.+.++..-. ...-.++||++|.+....
T Consensus 209 ~gdDD~FSSDL~de~l~~tfG~v~~plLvl~Sg~DEyvP--~~vdk~~Ll~rw~~a~~~~~~s~~S~iI~GA~H~~~~~~ 286 (303)
T PF08538_consen 209 GGDDDYFSSDLSDERLKKTFGKVSKPLLVLYSGKDEYVP--PWVDKEALLERWKAATNPKIWSPLSGIIPGASHNVSGPS 286 (303)
T ss_dssp SHHHHTHHHHHTT-HHHHTGGG--S-EEEEEE--TT--------------------------------------------
T ss_pred CCcccccCCCCCHHHHHHHhccCCCceEEEecCCCceec--ccccccccccccccccccccccccccccccccccccccc
Confidence 000000 0012345678899999999999997 433 3455566654322 223458999999986443
Q ss_pred cH---HHHHHHHHHHH
Q 002209 882 SI---MHVLWETDRWL 894 (953)
Q Consensus 882 ~~---~~~~~~i~~fl 894 (953)
.. +.+.+++..||
T Consensus 287 ~~~~~~~l~~rV~~fl 302 (303)
T PF08538_consen 287 QAEAREWLVERVVKFL 302 (303)
T ss_dssp ----------------
T ss_pred cccccccccccccccC
Confidence 32 24555555554
No 192
>KOG0973 consensus Histone transcription regulator HIRA, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning; Transcription]
Probab=98.93 E-value=5.7e-08 Score=112.34 Aligned_cols=104 Identities=18% Similarity=0.165 Sum_probs=72.7
Q ss_pred CcccceEeccCCCeEEEEEeeccccCCCCcceEEEEECCCCceeecccCCCccccccccceEEecCCeEEEEEecCCCCC
Q 002209 189 AKLNFVTWSQDGKHLAFSIRIDAEDSSSSKLRVWVADVDTGKARPLFQSPDIYLNAIFDNFVWVNNSTLLVCTIPLLRGD 268 (953)
Q Consensus 189 ~~~~~~~wSPDG~~laf~~~~~~~~~~~~~~~l~~~d~~~g~~~~lt~~~~~~~~~~~~~~~wspDg~~l~~~~~~~~~~ 268 (953)
..+....||||+.+|+-.+- ...|.+++..+.+...++...... +..+.|-|=|++|+..+.
T Consensus 130 ~DV~Dv~Wsp~~~~lvS~s~---------DnsViiwn~~tF~~~~vl~~H~s~----VKGvs~DP~Gky~ASqsd----- 191 (942)
T KOG0973|consen 130 SDVLDVNWSPDDSLLVSVSL---------DNSVIIWNAKTFELLKVLRGHQSL----VKGVSWDPIGKYFASQSD----- 191 (942)
T ss_pred CccceeccCCCccEEEEecc---------cceEEEEccccceeeeeeeccccc----ccceEECCccCeeeeecC-----
Confidence 47899999999999988653 567888888887655555444432 778999999999996511
Q ss_pred CCCCCCCCCCCceeecCCCccccchhhhhhcCCcchhhhhhhhccceEEEEEcCCceeEeCCC-------CcccccccCC
Q 002209 269 PPKKPLVPLGPKMQSNEKRDIIQVRTFQDLLKDEYDEDLFDYYATTQLVLVSLDGTVKEIGPP-------AVYTSLDPSP 341 (953)
Q Consensus 269 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~l~~~~~~g~~~~l~~~-------~~~~~~~~Sp 341 (953)
| ..-.+|+.+--|-.+.++.+ ..+..+.|||
T Consensus 192 -----------------------------------D-------rtikvwrt~dw~i~k~It~pf~~~~~~T~f~RlSWSP 229 (942)
T KOG0973|consen 192 -----------------------------------D-------RTLKVWRTSDWGIEKSITKPFEESPLTTFFLRLSWSP 229 (942)
T ss_pred -----------------------------------C-------ceEEEEEcccceeeEeeccchhhCCCcceeeecccCC
Confidence 1 22334443224556666554 3567899999
Q ss_pred CCcEEEEEEec
Q 002209 342 DEKYILISSIH 352 (953)
Q Consensus 342 DG~~l~~~~~~ 352 (953)
||++|+....-
T Consensus 230 DG~~las~nA~ 240 (942)
T KOG0973|consen 230 DGHHLASPNAV 240 (942)
T ss_pred CcCeecchhhc
Confidence 99999977543
No 193
>PF02239 Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO_B 1HZU_A 1N15_B 1N50_A 1GJQ_A 1BL9_B 1NIR_B 1N90_B 1HZV_A 1AOQ_A ....
Probab=98.92 E-value=1.3e-07 Score=103.95 Aligned_cols=305 Identities=15% Similarity=0.104 Sum_probs=144.3
Q ss_pred CceecCCCCEEEEEecCCCCCccccccccceeceEEecCCCCCCcceeeeeceEEEEccCCCCCCceeeeecCCCCCccc
Q 002209 113 ALSFSPQRDKILFLKRRALPPLEELARPEEKLAGLRIDGKCNTRSRMSFYTGIGIHQLFPDGKLGQEIEIQGFPDGAKLN 192 (953)
Q Consensus 113 ~~~~SPDG~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~i~~~~~~g~~~~~~~l~~~~~~~~~~ 192 (953)
.+.|||||+++.....+ +.|.++|+.+ .+ .+.....+....
T Consensus 41 ~~~~s~Dgr~~yv~~rd---------------------------------g~vsviD~~~----~~--~v~~i~~G~~~~ 81 (369)
T PF02239_consen 41 GLKFSPDGRYLYVANRD---------------------------------GTVSVIDLAT----GK--VVATIKVGGNPR 81 (369)
T ss_dssp EEE-TT-SSEEEEEETT---------------------------------SEEEEEETTS----SS--EEEEEE-SSEEE
T ss_pred EEEecCCCCEEEEEcCC---------------------------------CeEEEEECCc----cc--EEEEEecCCCcc
Confidence 35689999997776543 2568999843 22 232233455678
Q ss_pred ceEeccCCCeEEEEEeeccccCCCCcceEEEEECCCCceeecccCCCcc---ccccccceEEecCCeEEEEEecCCCCCC
Q 002209 193 FVTWSQDGKHLAFSIRIDAEDSSSSKLRVWVADVDTGKARPLFQSPDIY---LNAIFDNFVWVNNSTLLVCTIPLLRGDP 269 (953)
Q Consensus 193 ~~~wSPDG~~laf~~~~~~~~~~~~~~~l~~~d~~~g~~~~lt~~~~~~---~~~~~~~~~wspDg~~l~~~~~~~~~~~ 269 (953)
..++||||++|+.... ...++-++|.++.+..+........ ....+..+.-+|++..+++..
T Consensus 82 ~i~~s~DG~~~~v~n~--------~~~~v~v~D~~tle~v~~I~~~~~~~~~~~~Rv~aIv~s~~~~~fVv~l------- 146 (369)
T PF02239_consen 82 GIAVSPDGKYVYVANY--------EPGTVSVIDAETLEPVKTIPTGGMPVDGPESRVAAIVASPGRPEFVVNL------- 146 (369)
T ss_dssp EEEE--TTTEEEEEEE--------ETTEEEEEETTT--EEEEEE--EE-TTTS---EEEEEE-SSSSEEEEEE-------
T ss_pred eEEEcCCCCEEEEEec--------CCCceeEeccccccceeecccccccccccCCCceeEEecCCCCEEEEEE-------
Confidence 8999999999876543 2568999999887765432221100 000122344456665444431
Q ss_pred CCCCCCCCCCceeecCCCccccchhhhhhcCCcchhhhhhhhccceEEEEEc-CCc---eeEeCCCCcccccccCCCCcE
Q 002209 270 PKKPLVPLGPKMQSNEKRDIIQVRTFQDLLKDEYDEDLFDYYATTQLVLVSL-DGT---VKEIGPPAVYTSLDPSPDEKY 345 (953)
Q Consensus 270 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~l~~~~~-~g~---~~~l~~~~~~~~~~~SpDG~~ 345 (953)
-...+||.+|. +.+ .+.+..........|+|||++
T Consensus 147 -----------------------------------------kd~~~I~vVdy~d~~~~~~~~i~~g~~~~D~~~dpdgry 185 (369)
T PF02239_consen 147 -----------------------------------------KDTGEIWVVDYSDPKNLKVTTIKVGRFPHDGGFDPDGRY 185 (369)
T ss_dssp -----------------------------------------TTTTEEEEEETTTSSCEEEEEEE--TTEEEEEE-TTSSE
T ss_pred -----------------------------------------ccCCeEEEEEeccccccceeeecccccccccccCcccce
Confidence 03468999997 442 223322245567899999999
Q ss_pred EEEEEecCCccccccCCCCCcceEEEeccCceEEEeccC-CCcccCCccccccccCccceeeccCCCCceEEEEeccCCC
Q 002209 346 ILISSIHRPYSFIVPCGRFPRQVGVWTTDGIFVRELCDL-PLAEDIPIAFNSVRKGMRSINWRSDKPSTLYWAETQDGGD 424 (953)
Q Consensus 346 l~~~~~~~~~~~~~~~~~~~~~i~~~d~~g~~~~~l~~~-~~~~~~p~~~~~~~~~~~~~~wspDg~~i~~~~~~~~~~~ 424 (953)
++...+.. ..+-++|...+....+... ......+.. ....-...+.|+-.+........
T Consensus 186 ~~va~~~s------------n~i~viD~~~~k~v~~i~~g~~p~~~~~~--~~php~~g~vw~~~~~~~~~~~~------ 245 (369)
T PF02239_consen 186 FLVAANGS------------NKIAVIDTKTGKLVALIDTGKKPHPGPGA--NFPHPGFGPVWATSGLGYFAIPL------ 245 (369)
T ss_dssp EEEEEGGG------------TEEEEEETTTTEEEEEEE-SSSBEETTEE--EEEETTTEEEEEEEBSSSSEEEE------
T ss_pred eeeccccc------------ceeEEEeeccceEEEEeeccccccccccc--cccCCCcceEEeeccccceeccc------
Confidence 88765332 2777888876655443321 111111110 00000123445443332111100
Q ss_pred cccccccCCeEEEEecCCCCCCCceEEeecccccCCeeeccCCceEEEEEecccCceEEEEEcCCCCCCCcEEeecCCCc
Q 002209 425 AKVEVTPRDIIYTQQAEPVQGEGPEILHKLDLRYGGISWCDDSLALVYESWYKTRRTRTWVISPGSKDVAPRILFDRSSE 504 (953)
Q Consensus 425 ~~~~~~~~~~l~~~d~~~~~g~~~~~l~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~ 504 (953)
-+.+.+.+++. .+-...+.+.. .+.--.+..+||+++|+....-+.....+.++|..+-. ....+......
T Consensus 246 -----ig~~~v~v~d~--~~wkvv~~I~~-~G~glFi~thP~s~~vwvd~~~~~~~~~v~viD~~tl~-~~~~i~~~~~~ 316 (369)
T PF02239_consen 246 -----IGTDPVSVHDD--YAWKVVKTIPT-QGGGLFIKTHPDSRYVWVDTFLNPDADTVQVIDKKTLK-VVKTITPGPGK 316 (369)
T ss_dssp -----EE--TTT-STT--TBTSEEEEEE--SSSS--EE--TT-SEEEEE-TT-SSHT-EEEEECCGTE-EEE-HHHHHT-
T ss_pred -----ccCCccccchh--hcCeEEEEEEC-CCCcceeecCCCCccEEeeccCCCCCceEEEEECcCcc-eeEEEeccCCC
Confidence 00111112221 11111222322 22224567799999998873222223479999988741 11111111110
Q ss_pred cccCCCCCCCeEeccCCCEEEEEeeeccCCCcEEEEecCCCCCCCCCCeEEEEECCCCceEE
Q 002209 505 DVYSDPGSPMMRRTSTGTYVIAKIKKENDEGTYILLNGNGATPEGNIPFLDLFDINTGSKER 566 (953)
Q Consensus 505 ~~~~~~~~p~~~~SpDG~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~d~~~~~~~~ 566 (953)
... .+.|++||+.++.+..+.+ ..|.+||.+|.+...
T Consensus 317 ~~~------h~ef~~dG~~v~vS~~~~~-------------------~~i~v~D~~Tl~~~~ 353 (369)
T PF02239_consen 317 RVV------HMEFNPDGKEVWVSVWDGN-------------------GAIVVYDAKTLKEKK 353 (369)
T ss_dssp -EE------EEEE-TTSSEEEEEEE--T-------------------TEEEEEETTTTEEEE
T ss_pred cEe------ccEECCCCCEEEEEEecCC-------------------CEEEEEECCCcEEEE
Confidence 011 1789999999998875431 148899988876654
No 194
>KOG0772 consensus Uncharacterized conserved protein, contains WD40 repeat [Function unknown]
Probab=98.91 E-value=1.7e-07 Score=99.30 Aligned_cols=246 Identities=13% Similarity=0.139 Sum_probs=137.4
Q ss_pred cccceEeccCCCeEEEEEeeccccCCCCcceEEEEECCCCce-----eecccCCCccccccccceEEecCCeEEEEEecC
Q 002209 190 KLNFVTWSQDGKHLAFSIRIDAEDSSSSKLRVWVADVDTGKA-----RPLFQSPDIYLNAIFDNFVWVNNSTLLVCTIPL 264 (953)
Q Consensus 190 ~~~~~~wSPDG~~laf~~~~~~~~~~~~~~~l~~~d~~~g~~-----~~lt~~~~~~~~~~~~~~~wspDg~~l~~~~~~ 264 (953)
.+...++-|.|-+++. +.-...+..||..|-.. ++|-..+.. .+.+++||+.|..|++.+..
T Consensus 169 ~Vsal~~Dp~GaR~~s---------Gs~Dy~v~~wDf~gMdas~~~fr~l~P~E~h----~i~sl~ys~Tg~~iLvvsg~ 235 (641)
T KOG0772|consen 169 IVSALAVDPSGARFVS---------GSLDYTVKFWDFQGMDASMRSFRQLQPCETH----QINSLQYSVTGDQILVVSGS 235 (641)
T ss_pred EEEEeeecCCCceeee---------ccccceEEEEecccccccchhhhccCccccc----ccceeeecCCCCeEEEEecC
Confidence 7888899999999887 44567788888877532 444443332 27799999999877766211
Q ss_pred CCCCCCCCCCCCCCCceeecCCCccccchhhhhhcCCcchhhhhhhhccceEEEEEc---CCceeEeCCCCcccccccCC
Q 002209 265 LRGDPPKKPLVPLGPKMQSNEKRDIIQVRTFQDLLKDEYDEDLFDYYATTQLVLVSL---DGTVKEIGPPAVYTSLDPSP 341 (953)
Q Consensus 265 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~l~~~~~---~g~~~~l~~~~~~~~~~~Sp 341 (953)
.. +++.+.++.. +.-+..+.-|+.|+ .|.. ..++..+|.|
T Consensus 236 aq------------akl~DRdG~~-------------------~~e~~KGDQYI~Dm~nTKGHi------a~lt~g~whP 278 (641)
T KOG0772|consen 236 AQ------------AKLLDRDGFE-------------------IVEFSKGDQYIRDMYNTKGHI------AELTCGCWHP 278 (641)
T ss_pred cc------------eeEEccCCce-------------------eeeeeccchhhhhhhccCCce------eeeecccccc
Confidence 11 0111111110 00011233344444 1222 3456678999
Q ss_pred CCcEEEEEEecCCccccccCCCCCcceEEEeccCc--eEEEeccCCCcccCCccccccccCccceeeccCCCCceEEEEe
Q 002209 342 DEKYILISSIHRPYSFIVPCGRFPRQVGVWTTDGI--FVRELCDLPLAEDIPIAFNSVRKGMRSINWRSDKPSTLYWAET 419 (953)
Q Consensus 342 DG~~l~~~~~~~~~~~~~~~~~~~~~i~~~d~~g~--~~~~l~~~~~~~~~p~~~~~~~~~~~~~~wspDg~~i~~~~~~ 419 (953)
+.+..+.+... .+.+.+|+++.. +.+.+...+.. +.+.-+..-+|+|||+.|+-.
T Consensus 279 ~~k~~FlT~s~------------DgtlRiWdv~~~k~q~qVik~k~~~--------g~Rv~~tsC~~nrdg~~iAag--- 335 (641)
T KOG0772|consen 279 DNKEEFLTCSY------------DGTLRIWDVNNTKSQLQVIKTKPAG--------GKRVPVTSCAWNRDGKLIAAG--- 335 (641)
T ss_pred CcccceEEecC------------CCcEEEEecCCchhheeEEeeccCC--------CcccCceeeecCCCcchhhhc---
Confidence 99988887733 358999999842 22222221111 122233568999999987755
Q ss_pred ccCCCcccccccCCeEEEEecCCCCCCCceEEe--ec--ccccCCeeeccCCceEEEEEecccCceEEEEEcCCCCCCCc
Q 002209 420 QDGGDAKVEVTPRDIIYTQQAEPVQGEGPEILH--KL--DLRYGGISWCDDSLALVYESWYKTRRTRTWVISPGSKDVAP 495 (953)
Q Consensus 420 ~~~~~~~~~~~~~~~l~~~d~~~~~g~~~~~l~--~~--~~~~~~~~~SpDg~~l~~~~~~~~~~~~l~~~d~~~~~~~~ 495 (953)
-..+.|-.|+. ..-+..+.... .+ ...+.+++||+||++|+.-+.+++- ++|.+.--. ++
T Consensus 336 ----------c~DGSIQ~W~~-~~~~v~p~~~vk~AH~~g~~Itsi~FS~dg~~LlSRg~D~tL--KvWDLrq~k---kp 399 (641)
T KOG0772|consen 336 ----------CLDGSIQIWDK-GSRTVRPVMKVKDAHLPGQDITSISFSYDGNYLLSRGFDDTL--KVWDLRQFK---KP 399 (641)
T ss_pred ----------ccCCceeeeec-CCcccccceEeeeccCCCCceeEEEeccccchhhhccCCCce--eeeeccccc---cc
Confidence 22445556663 11111222221 22 2367889999999999987766643 666554322 22
Q ss_pred EEe-ecCCCccccCCCCCCCeEeccCCCEEEEEee
Q 002209 496 RIL-FDRSSEDVYSDPGSPMMRRTSTGTYVIAKIK 529 (953)
Q Consensus 496 ~~~-~~~~~~~~~~~~~~p~~~~SpDG~~l~~~~~ 529 (953)
... +..... | ++.- ..||||.+.|+....
T Consensus 400 L~~~tgL~t~--~--~~td-c~FSPd~kli~TGtS 429 (641)
T KOG0772|consen 400 LNVRTGLPTP--F--PGTD-CCFSPDDKLILTGTS 429 (641)
T ss_pred hhhhcCCCcc--C--CCCc-cccCCCceEEEeccc
Confidence 222 211111 1 0111 579999988877653
No 195
>PRK13616 lipoprotein LpqB; Provisional
Probab=98.90 E-value=8.3e-08 Score=111.13 Aligned_cols=178 Identities=14% Similarity=0.211 Sum_probs=112.9
Q ss_pred cccceEeccCCCeEEEEEeeccccCCCCcceEEEEECCCCceeecccCCCccccccccceEEecCCeEEEEEecCCCCCC
Q 002209 190 KLNFVTWSQDGKHLAFSIRIDAEDSSSSKLRVWVADVDTGKARPLFQSPDIYLNAIFDNFVWVNNSTLLVCTIPLLRGDP 269 (953)
Q Consensus 190 ~~~~~~wSPDG~~laf~~~~~~~~~~~~~~~l~~~d~~~g~~~~lt~~~~~~~~~~~~~~~wspDg~~l~~~~~~~~~~~ 269 (953)
.+..|+.||||+++||+....+ ...++..+||+.+. +++.++++.... ...+.|+|||+.|+|.......
T Consensus 351 ~vsspaiSpdG~~vA~v~~~~~-~~~d~~s~Lwv~~~-gg~~~~lt~g~~------~t~PsWspDG~~lw~v~dg~~~-- 420 (591)
T PRK13616 351 NITSAALSRSGRQVAAVVTLGR-GAPDPASSLWVGPL-GGVAVQVLEGHS------LTRPSWSLDADAVWVVVDGNTV-- 420 (591)
T ss_pred CcccceECCCCCEEEEEEeecC-CCCCcceEEEEEeC-CCcceeeecCCC------CCCceECCCCCceEEEecCcce--
Confidence 6789999999999999986543 22346779999997 555678876543 5689999999999988321110
Q ss_pred CCCCCCCCCCceeecCCCccccchhhhhhcCCcchhhhhhhhccceEEEEEc-CCceeEeCCCCcccccccCCCCcEEEE
Q 002209 270 PKKPLVPLGPKMQSNEKRDIIQVRTFQDLLKDEYDEDLFDYYATTQLVLVSL-DGTVKEIGPPAVYTSLDPSPDEKYILI 348 (953)
Q Consensus 270 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~l~~~~~-~g~~~~l~~~~~~~~~~~SpDG~~l~~ 348 (953)
.+ +... .+.++||++++ .|+.+. ...+.+.++.|||||++|+|
T Consensus 421 --------------------~~-------v~~~--------~~~gql~~~~vd~ge~~~-~~~g~Issl~wSpDG~RiA~ 464 (591)
T PRK13616 421 --------------------VR-------VIRD--------PATGQLARTPVDASAVAS-RVPGPISELQLSRDGVRAAM 464 (591)
T ss_pred --------------------EE-------Eecc--------CCCceEEEEeccCchhhh-ccCCCcCeEEECCCCCEEEE
Confidence 00 0000 03468999998 666655 22367999999999999999
Q ss_pred EEecCCccccccCCCCCcceEE---EeccCceEEEeccCC-CcccCCccccccccCccceeeccCCCCceEEEEeccCCC
Q 002209 349 SSIHRPYSFIVPCGRFPRQVGV---WTTDGIFVRELCDLP-LAEDIPIAFNSVRKGMRSINWRSDKPSTLYWAETQDGGD 424 (953)
Q Consensus 349 ~~~~~~~~~~~~~~~~~~~i~~---~d~~g~~~~~l~~~~-~~~~~p~~~~~~~~~~~~~~wspDg~~i~~~~~~~~~~~ 424 (953)
... +.|++ ...++++ +.|+... ... +......++.|..|++ |+.. ..
T Consensus 465 i~~--------------g~v~Va~Vvr~~~G~-~~l~~~~~l~~-------~l~~~~~~l~W~~~~~-L~V~--~~---- 515 (591)
T PRK13616 465 IIG--------------GKVYLAVVEQTEDGQ-YALTNPREVGP-------GLGDTAVSLDWRTGDS-LVVG--RS---- 515 (591)
T ss_pred EEC--------------CEEEEEEEEeCCCCc-eeecccEEeec-------ccCCccccceEecCCE-EEEE--ec----
Confidence 972 26776 4444554 4443211 000 0111135688999998 4433 11
Q ss_pred cccccccCCeEEEEecCCCCCCCceE
Q 002209 425 AKVEVTPRDIIYTQQAEPVQGEGPEI 450 (953)
Q Consensus 425 ~~~~~~~~~~l~~~d~~~~~g~~~~~ 450 (953)
+....+|.+.+ +|.....
T Consensus 516 -----~~~~~v~~v~v---DG~~~~~ 533 (591)
T PRK13616 516 -----DPEHPVWYVNL---DGSNSDA 533 (591)
T ss_pred -----CCCCceEEEec---CCccccc
Confidence 12345788876 6555443
No 196
>KOG0282 consensus mRNA splicing factor [Function unknown]
Probab=98.89 E-value=2.7e-08 Score=104.80 Aligned_cols=221 Identities=9% Similarity=0.022 Sum_probs=134.6
Q ss_pred eceEEEEccCCCCCCceeeeecCCCCCcccceEeccCCCeEEEEEeeccccCCCCcceEEEEECCCCceeecccCCCccc
Q 002209 163 TGIGIHQLFPDGKLGQEIEIQGFPDGAKLNFVTWSQDGKHLAFSIRIDAEDSSSSKLRVWVADVDTGKARPLFQSPDIYL 242 (953)
Q Consensus 163 ~~i~i~~~~~~g~~~~~~~l~~~~~~~~~~~~~wSPDG~~laf~~~~~~~~~~~~~~~l~~~d~~~g~~~~lt~~~~~~~ 242 (953)
..|+||++-+++. -.+...+ +...+....||.+|..++.++ ....|-++|+++|+...-......
T Consensus 237 ~~vklW~vy~~~~--~lrtf~g--H~k~Vrd~~~s~~g~~fLS~s---------fD~~lKlwDtETG~~~~~f~~~~~-- 301 (503)
T KOG0282|consen 237 GLVKLWNVYDDRR--CLRTFKG--HRKPVRDASFNNCGTSFLSAS---------FDRFLKLWDTETGQVLSRFHLDKV-- 301 (503)
T ss_pred ceEEEEEEecCcc--eehhhhc--chhhhhhhhccccCCeeeeee---------cceeeeeeccccceEEEEEecCCC--
Confidence 4679999965442 2222222 223799999999999988765 367888999999987544332321
Q ss_pred cccccceEEecCCeEEEEEecCCCCCCCCCCCCCCCCceeecCCCccccchhhhhhcCCcchhhhhhhhccceEEEEEc-
Q 002209 243 NAIFDNFVWVNNSTLLVCTIPLLRGDPPKKPLVPLGPKMQSNEKRDIIQVRTFQDLLKDEYDEDLFDYYATTQLVLVSL- 321 (953)
Q Consensus 243 ~~~~~~~~wspDg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~l~~~~~- 321 (953)
..-+.+.||+..++++.. ..+.|..+|+
T Consensus 302 ---~~cvkf~pd~~n~fl~G~------------------------------------------------sd~ki~~wDiR 330 (503)
T KOG0282|consen 302 ---PTCVKFHPDNQNIFLVGG------------------------------------------------SDKKIRQWDIR 330 (503)
T ss_pred ---ceeeecCCCCCcEEEEec------------------------------------------------CCCcEEEEecc
Confidence 446778899966665510 2356778888
Q ss_pred CCceeEeCC-C-CcccccccCCCCcEEEEEEecCCccccccCCCCCcceEEEeccCceEEEeccCCCcccCCcccccccc
Q 002209 322 DGTVKEIGP-P-AVYTSLDPSPDEKYILISSIHRPYSFIVPCGRFPRQVGVWTTDGIFVRELCDLPLAEDIPIAFNSVRK 399 (953)
Q Consensus 322 ~g~~~~l~~-~-~~~~~~~~SpDG~~l~~~~~~~~~~~~~~~~~~~~~i~~~d~~g~~~~~l~~~~~~~~~p~~~~~~~~ 399 (953)
+|++.+-.. . +.+..+.|-++|++.+.++.+. .+.+|+......-.+...+.. .
T Consensus 331 s~kvvqeYd~hLg~i~~i~F~~~g~rFissSDdk-------------s~riWe~~~~v~ik~i~~~~~-----------h 386 (503)
T KOG0282|consen 331 SGKVVQEYDRHLGAILDITFVDEGRRFISSSDDK-------------SVRIWENRIPVPIKNIADPEM-----------H 386 (503)
T ss_pred chHHHHHHHhhhhheeeeEEccCCceEeeeccCc-------------cEEEEEcCCCccchhhcchhh-----------c
Confidence 886544332 3 6778899999999999888554 788887764332221111111 1
Q ss_pred CccceeeccCCCCceEEEEeccCCCcccccccCCeEEEEecCCC-CCCCceEEeec--ccccCCeeeccCCceEEEEEec
Q 002209 400 GMRSINWRSDKPSTLYWAETQDGGDAKVEVTPRDIIYTQQAEPV-QGEGPEILHKL--DLRYGGISWCDDSLALVYESWY 476 (953)
Q Consensus 400 ~~~~~~wspDg~~i~~~~~~~~~~~~~~~~~~~~~l~~~d~~~~-~g~~~~~l~~~--~~~~~~~~~SpDg~~l~~~~~~ 476 (953)
....+..+|+++.++-- +-.+.++++.+.+. .-...+....+ .+..-.+.|||||++|++...+
T Consensus 387 smP~~~~~P~~~~~~aQ-------------s~dN~i~ifs~~~~~r~nkkK~feGh~vaGys~~v~fSpDG~~l~SGdsd 453 (503)
T KOG0282|consen 387 TMPCLTLHPNGKWFAAQ-------------SMDNYIAIFSTVPPFRLNKKKRFEGHSVAGYSCQVDFSPDGRTLCSGDSD 453 (503)
T ss_pred cCcceecCCCCCeehhh-------------ccCceEEEEecccccccCHhhhhcceeccCceeeEEEcCCCCeEEeecCC
Confidence 23457788888744322 33445665553111 11111222222 2233458999999999987543
Q ss_pred ccCceEEEEEcCCC
Q 002209 477 KTRRTRTWVISPGS 490 (953)
Q Consensus 477 ~~~~~~l~~~d~~~ 490 (953)
+ +++.+|..+
T Consensus 454 G----~v~~wdwkt 463 (503)
T KOG0282|consen 454 G----KVNFWDWKT 463 (503)
T ss_pred c----cEEEeechh
Confidence 3 678887766
No 197
>PRK07868 acyl-CoA synthetase; Validated
Probab=98.89 E-value=1.3e-07 Score=119.02 Aligned_cols=230 Identities=13% Similarity=0.132 Sum_probs=131.1
Q ss_pred EEEEEEcCCCCCCCCCCCccEEEEeCCCCCcCcCCCCcccCCCCCCCCc-cchHHHHHHHcCcEEEEcCCCCCCCCCChh
Q 002209 652 LSATLYLPPGYDPSKDGPLPCLFWSYPGEFKSKDAAGQVRGSPNEFPRI-GSTSVLLWLARGFAILGGPTTPIIGEGDEE 730 (953)
Q Consensus 652 ~~~~l~~P~~~~~~~~~~~P~vv~~hGg~~~~~~~~~~~~~~~~~~~~~-~~~~~~~la~~G~~V~~~~~~~~~G~G~~~ 730 (953)
+..+-|.|..-+..++...|.||++||..... ..|... .......|+++||.|+.+|. +..+. ..
T Consensus 49 ~~l~~y~~~~~~~~~~~~~~plllvhg~~~~~-----------~~~d~~~~~s~v~~L~~~g~~v~~~d~-G~~~~--~~ 114 (994)
T PRK07868 49 YRLRRYFPPDNRPGQPPVGPPVLMVHPMMMSA-----------DMWDVTRDDGAVGILHRAGLDPWVIDF-GSPDK--VE 114 (994)
T ss_pred EEEEEeCCCCccccccCCCCcEEEECCCCCCc-----------cceecCCcccHHHHHHHCCCEEEEEcC-CCCCh--hH
Confidence 45556666542111111247788899953211 112111 11235678899999999763 22111 00
Q ss_pred hh-hhhHHHHHHHHHHHHHHHHHcCCCCCCcEEEEEeChHHHHHHHHHHhC-CCcccEEEEcccCCCCCCC-----C--c
Q 002209 731 AN-DRFVEQLVACAEAAVEEVVRRGVAHPSKIAVGGHSYGAFMTANLLAHA-PHLFCCGIARSGAYNRTLT-----P--F 801 (953)
Q Consensus 731 ~~-~~~~~~~~~D~~~~~~~l~~~~~~d~~~i~l~G~S~GG~~a~~~a~~~-p~~~~a~v~~~~~~d~~~~-----~--~ 801 (953)
.. ...+...+..+.++++.+.+.. .+++.++||||||.+++.+++.+ +++++.+|+++...|.... + +
T Consensus 115 ~~~~~~l~~~i~~l~~~l~~v~~~~---~~~v~lvG~s~GG~~a~~~aa~~~~~~v~~lvl~~~~~d~~~~~~~~~~~~~ 191 (994)
T PRK07868 115 GGMERNLADHVVALSEAIDTVKDVT---GRDVHLVGYSQGGMFCYQAAAYRRSKDIASIVTFGSPVDTLAALPMGIPAGL 191 (994)
T ss_pred cCccCCHHHHHHHHHHHHHHHHHhh---CCceEEEEEChhHHHHHHHHHhcCCCccceEEEEecccccCCCCcccchhhh
Confidence 10 1122333445566666665443 24799999999999998888754 4589998876655432100 0 0
Q ss_pred ----------------Cccc--------------------------cc-ch-------------h-h-hh--------HH
Q 002209 802 ----------------GFQN--------------------------ED-RT-------------L-W-EA--------TS 815 (953)
Q Consensus 802 ----------------~~~~--------------------------~~-~~-------------~-~-~~--------~~ 815 (953)
.... .. .. . | .. ..
T Consensus 192 ~~~~~~~~~~~~~~~~~~p~~~~~~~~~~l~p~~~~~~~~~~~~~l~~~~~~~~~e~~~~~~~~~~w~~~~g~~~~~~~~ 271 (994)
T PRK07868 192 AAAAADFMADHVFNRLDIPGWMARTGFQMLDPVKTAKARVDFLRQLHDREALLPREQQRRFLESEGWIAWSGPAISELLK 271 (994)
T ss_pred hhcccccchhhhhhcCCCCHHHHHHHHHhcChhHHHHHHHHHHHhcCchhhhccchhhHhHHHHhhccccchHHHHHHHH
Confidence 0000 00 00 0 1 00 00
Q ss_pred HHHhcCcc-----------cccCCCCCcEEEEEeCCCCCCCCchHHHHHHHHHHHhCCCcEEE-EEeCCCCccC--CCcc
Q 002209 816 TYVEMSPF-----------MSANKLKKPILLVHGEEDNNSGTLTMQSDRFFNALKGHGALCRL-VILPFESHGY--AARE 881 (953)
Q Consensus 816 ~~~~~sp~-----------~~~~~i~~P~Li~~G~~D~~v~~~~~~~~~~~~~l~~~g~~~~~-~~~~~~~H~~--~~~~ 881 (953)
.+...+.+ ..+.+|++|+|+++|+.|.++| +..++.+.+.+... ++ .+++++||.. ....
T Consensus 272 ~~~~~n~~~~g~~~~~~~~~~L~~i~~P~L~i~G~~D~ivp--~~~~~~l~~~i~~a----~~~~~~~~~GH~g~~~g~~ 345 (994)
T PRK07868 272 QFIAHNRMMTGGFAINGQMVTLADITCPVLAFVGEVDDIGQ--PASVRGIRRAAPNA----EVYESLIRAGHFGLVVGSR 345 (994)
T ss_pred HHHHhCcccCceEEECCEEcchhhCCCCEEEEEeCCCCCCC--HHHHHHHHHhCCCC----eEEEEeCCCCCEeeeechh
Confidence 01100111 1356789999999999999998 88888887765432 44 5678899974 3445
Q ss_pred cHHHHHHHHHHHHHHhccCCCCC
Q 002209 882 SIMHVLWETDRWLQKYCVSNTAD 904 (953)
Q Consensus 882 ~~~~~~~~i~~fl~~~l~~~~~~ 904 (953)
....++..+.+||.++-...+.+
T Consensus 346 a~~~~wp~i~~wl~~~~~~~~~~ 368 (994)
T PRK07868 346 AAQQTWPTVADWVKWLEGDGDKP 368 (994)
T ss_pred hhhhhChHHHHHHHHhccCCCCC
Confidence 56778899999999986555443
No 198
>TIGR01838 PHA_synth_I poly(R)-hydroxyalkanoic acid synthase, class I. This model represents the class I subfamily of poly(R)-hydroxyalkanoate synthases, which polymerizes hydroxyacyl-CoAs with three to five carbons in the hydroxyacyl backbone into aliphatic esters termed poly(R)-hydroxyalkanoic acids. These polymers accumulate as carbon and energy storage inclusions in many species and can amount to 90 percent of the dry weight of cell.
Probab=98.88 E-value=8.6e-08 Score=109.00 Aligned_cols=88 Identities=14% Similarity=0.085 Sum_probs=61.7
Q ss_pred hHHHHHHHcCcEEEEcCCCCCCCCCChhhhhhhHHHHHHHHHHHHHHHHHcCCCCCCcEEEEEeChHHHHHH----HHHH
Q 002209 703 TSVLLWLARGFAILGGPTTPIIGEGDEEANDRFVEQLVACAEAAVEEVVRRGVAHPSKIAVGGHSYGAFMTA----NLLA 778 (953)
Q Consensus 703 ~~~~~la~~G~~V~~~~~~~~~G~G~~~~~~~~~~~~~~D~~~~~~~l~~~~~~d~~~i~l~G~S~GG~~a~----~~a~ 778 (953)
....+|+++||.|++++. .|.|.+...........+++.++++++.+.- +.+++.++|||+||.+++ .+++
T Consensus 211 Slv~~L~~qGf~V~~iDw---rgpg~s~~~~~~ddY~~~~i~~al~~v~~~~--g~~kv~lvG~cmGGtl~a~ala~~aa 285 (532)
T TIGR01838 211 SLVRWLVEQGHTVFVISW---RNPDASQADKTFDDYIRDGVIAALEVVEAIT--GEKQVNCVGYCIGGTLLSTALAYLAA 285 (532)
T ss_pred HHHHHHHHCCcEEEEEEC---CCCCcccccCChhhhHHHHHHHHHHHHHHhc--CCCCeEEEEECcCcHHHHHHHHHHHH
Confidence 467789999999999554 4555553332233444566788888887642 457899999999999862 2344
Q ss_pred hC-CCcccEEEEcccCCC
Q 002209 779 HA-PHLFCCGIARSGAYN 795 (953)
Q Consensus 779 ~~-p~~~~a~v~~~~~~d 795 (953)
.. ++++++++.++...|
T Consensus 286 ~~~~~rv~slvll~t~~D 303 (532)
T TIGR01838 286 RGDDKRIKSATFFTTLLD 303 (532)
T ss_pred hCCCCccceEEEEecCcC
Confidence 54 678999988877655
No 199
>PTZ00421 coronin; Provisional
Probab=98.87 E-value=8.9e-07 Score=100.95 Aligned_cols=169 Identities=9% Similarity=0.032 Sum_probs=97.1
Q ss_pred CcccccccCCCCc-EEEEEEecCCccccccCCCCCcceEEEeccCceEE-EeccCCCcccCCccccccccCccceeeccC
Q 002209 332 AVYTSLDPSPDEK-YILISSIHRPYSFIVPCGRFPRQVGVWTTDGIFVR-ELCDLPLAEDIPIAFNSVRKGMRSINWRSD 409 (953)
Q Consensus 332 ~~~~~~~~SpDG~-~l~~~~~~~~~~~~~~~~~~~~~i~~~d~~g~~~~-~l~~~~~~~~~p~~~~~~~~~~~~~~wspD 409 (953)
..+..++|+|++. .|+..+.+ +.|.+||+..+... .+..+. ..+..++|+||
T Consensus 126 ~~V~~l~f~P~~~~iLaSgs~D-------------gtVrIWDl~tg~~~~~l~~h~-------------~~V~sla~spd 179 (493)
T PTZ00421 126 KKVGIVSFHPSAMNVLASAGAD-------------MVVNVWDVERGKAVEVIKCHS-------------DQITSLEWNLD 179 (493)
T ss_pred CcEEEEEeCcCCCCEEEEEeCC-------------CEEEEEECCCCeEEEEEcCCC-------------CceEEEEEECC
Confidence 6677899999975 55544433 38999999865433 333221 34568999999
Q ss_pred CCCceEEEEeccCCCcccccccCCeEEEEecCCCCCCCceEEeecccc-cCCeeeccCCceEEEEEecccCceEEEEEcC
Q 002209 410 KPSTLYWAETQDGGDAKVEVTPRDIIYTQQAEPVQGEGPEILHKLDLR-YGGISWCDDSLALVYESWYKTRRTRTWVISP 488 (953)
Q Consensus 410 g~~i~~~~~~~~~~~~~~~~~~~~~l~~~d~~~~~g~~~~~l~~~~~~-~~~~~~SpDg~~l~~~~~~~~~~~~l~~~d~ 488 (953)
|+.++.. +....|.+||+ .++.....+..+... ...+.|++++..|+...........+.++|+
T Consensus 180 G~lLatg-------------s~Dg~IrIwD~--rsg~~v~tl~~H~~~~~~~~~w~~~~~~ivt~G~s~s~Dr~VklWDl 244 (493)
T PTZ00421 180 GSLLCTT-------------SKDKKLNIIDP--RDGTIVSSVEAHASAKSQRCLWAKRKDLIITLGCSKSQQRQIMLWDT 244 (493)
T ss_pred CCEEEEe-------------cCCCEEEEEEC--CCCcEEEEEecCCCCcceEEEEcCCCCeEEEEecCCCCCCeEEEEeC
Confidence 9876655 44568899996 333322333333322 3357899998887765532211124555555
Q ss_pred CCCCCCcEEeecCCCccccCCCCCCCeEeccCCCEEEEEeeeccCCCcEEEEecCCCCCCCCCCeEEEEECCCCceEEE
Q 002209 489 GSKDVAPRILFDRSSEDVYSDPGSPMMRRTSTGTYVIAKIKKENDEGTYILLNGNGATPEGNIPFLDLFDINTGSKERI 567 (953)
Q Consensus 489 ~~~~~~~~~~~~~~~~~~~~~~~~p~~~~SpDG~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~d~~~~~~~~l 567 (953)
... ..+....+..... ....+.|++|++.|+....+. ..|++||+.+++....
T Consensus 245 r~~-~~p~~~~~~d~~~-----~~~~~~~d~d~~~L~lggkgD--------------------g~Iriwdl~~~~~~~~ 297 (493)
T PTZ00421 245 RKM-ASPYSTVDLDQSS-----ALFIPFFDEDTNLLYIGSKGE--------------------GNIRCFELMNERLTFC 297 (493)
T ss_pred CCC-CCceeEeccCCCC-----ceEEEEEcCCCCEEEEEEeCC--------------------CeEEEEEeeCCceEEE
Confidence 443 1233222211111 111145889998776654211 2488999987765544
No 200
>KOG1273 consensus WD40 repeat protein [General function prediction only]
Probab=98.87 E-value=4.9e-07 Score=90.28 Aligned_cols=264 Identities=13% Similarity=0.116 Sum_probs=153.6
Q ss_pred CchhHHHhhcCCCCCCceecCCCCEEEEEecCCCCCccccccccceeceEEecCCCCCCcceeeeeceEEEEccCCCCCC
Q 002209 98 PPPEIREIVDAPPLPALSFSPQRDKILFLKRRALPPLEELARPEEKLAGLRIDGKCNTRSRMSFYTGIGIHQLFPDGKLG 177 (953)
Q Consensus 98 ~~~~~~~~~~~~~~~~~~~SPDG~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~i~~~~~~g~~~ 177 (953)
-|.++..-++.+.....+||+-|.+||....+ +.+.|||+.+= +
T Consensus 13 ~PEel~~tld~~~a~~~~Fs~~G~~lAvGc~n---------------------------------G~vvI~D~~T~---~ 56 (405)
T KOG1273|consen 13 YPEELTHTLDNPLAECCQFSRWGDYLAVGCAN---------------------------------GRVVIYDFDTF---R 56 (405)
T ss_pred ChHhhceeccCCccceEEeccCcceeeeeccC---------------------------------CcEEEEEcccc---c
Confidence 34555556666677789999999999998875 36689998541 2
Q ss_pred ceeeeecCCCCCcccceEeccCCCeEEEEEeeccccCCCCcceEEEEECCCCceeecccCCCccccccccceEEecCCeE
Q 002209 178 QEIEIQGFPDGAKLNFVTWSQDGKHLAFSIRIDAEDSSSSKLRVWVADVDTGKARPLFQSPDIYLNAIFDNFVWVNNSTL 257 (953)
Q Consensus 178 ~~~~l~~~~~~~~~~~~~wSPDG~~laf~~~~~~~~~~~~~~~l~~~d~~~g~~~~lt~~~~~~~~~~~~~~~wspDg~~ 257 (953)
..+.|+.+. ..+....||+||+.|+..++ ...+-++|+..|.+.+-...+. .+-.+.|.|-.+.
T Consensus 57 iar~lsaH~--~pi~sl~WS~dgr~LltsS~---------D~si~lwDl~~gs~l~rirf~s-----pv~~~q~hp~k~n 120 (405)
T KOG1273|consen 57 IARMLSAHV--RPITSLCWSRDGRKLLTSSR---------DWSIKLWDLLKGSPLKRIRFDS-----PVWGAQWHPRKRN 120 (405)
T ss_pred hhhhhhccc--cceeEEEecCCCCEeeeecC---------CceeEEEeccCCCceeEEEccC-----ccceeeeccccCC
Confidence 344554433 36899999999999998664 5677888888776533222232 2557788866544
Q ss_pred EEEEecCCCCCCCCCCCCCCCCceeecCCCccccchhhhhhcCCcchhhhhhhhccceEEEEEc-CCceeEeCCC--C-c
Q 002209 258 LVCTIPLLRGDPPKKPLVPLGPKMQSNEKRDIIQVRTFQDLLKDEYDEDLFDYYATTQLVLVSL-DGTVKEIGPP--A-V 333 (953)
Q Consensus 258 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~l~~~~~-~g~~~~l~~~--~-~ 333 (953)
.+++..- ...-+++++ +++.+.|... + .
T Consensus 121 ~~va~~~------------------------------------------------~~sp~vi~~s~~~h~~Lp~d~d~dl 152 (405)
T KOG1273|consen 121 KCVATIM------------------------------------------------EESPVVIDFSDPKHSVLPKDDDGDL 152 (405)
T ss_pred eEEEEEe------------------------------------------------cCCcEEEEecCCceeeccCCCcccc
Confidence 4333110 011224444 4555555433 1 1
Q ss_pred cc---ccccCCCCcEEEEEEecCCccccccCCCCCcceEEEeccCceEEEeccCCCcccCCccccccccCccceeeccCC
Q 002209 334 YT---SLDPSPDEKYILISSIHRPYSFIVPCGRFPRQVGVWTTDGIFVRELCDLPLAEDIPIAFNSVRKGMRSINWRSDK 410 (953)
Q Consensus 334 ~~---~~~~SpDG~~l~~~~~~~~~~~~~~~~~~~~~i~~~d~~g~~~~~l~~~~~~~~~p~~~~~~~~~~~~~~wspDg 410 (953)
.. ...|.+-|++|+..... +.+.+++.++-+...-..... ...++.+.++-.|
T Consensus 153 n~sas~~~fdr~g~yIitGtsK-------------Gkllv~~a~t~e~vas~rits-----------~~~IK~I~~s~~g 208 (405)
T KOG1273|consen 153 NSSASHGVFDRRGKYIITGTSK-------------GKLLVYDAETLECVASFRITS-----------VQAIKQIIVSRKG 208 (405)
T ss_pred ccccccccccCCCCEEEEecCc-------------ceEEEEecchheeeeeeeech-----------heeeeEEEEeccC
Confidence 11 22478889998876533 367788877654332111100 0234677888888
Q ss_pred CCceEEEEeccCCCcccccccCCeEEEEecCCC----CCCCceEEeec-----ccccCCeeeccCCceEEEEEecccCce
Q 002209 411 PSTLYWAETQDGGDAKVEVTPRDIIYTQQAEPV----QGEGPEILHKL-----DLRYGGISWCDDSLALVYESWYKTRRT 481 (953)
Q Consensus 411 ~~i~~~~~~~~~~~~~~~~~~~~~l~~~d~~~~----~g~~~~~l~~~-----~~~~~~~~~SpDg~~l~~~~~~~~~~~ 481 (953)
+.+++- .....|.+++.... .+++++...+. ........||.||.+++.++. . .-
T Consensus 209 ~~liiN-------------tsDRvIR~ye~~di~~~~r~~e~e~~~K~qDvVNk~~Wk~ccfs~dgeYv~a~s~-~--aH 272 (405)
T KOG1273|consen 209 RFLIIN-------------TSDRVIRTYEISDIDDEGRDGEVEPEHKLQDVVNKLQWKKCCFSGDGEYVCAGSA-R--AH 272 (405)
T ss_pred cEEEEe-------------cCCceEEEEehhhhcccCccCCcChhHHHHHHHhhhhhhheeecCCccEEEeccc-c--ce
Confidence 866654 22334556654100 12222221111 112245789999999988762 2 23
Q ss_pred EEEEEcCCCCCCCcEEeecCCC
Q 002209 482 RTWVISPGSKDVAPRILFDRSS 503 (953)
Q Consensus 482 ~l~~~d~~~~~~~~~~~~~~~~ 503 (953)
.||++....| ....+.....
T Consensus 273 aLYIWE~~~G--sLVKILhG~k 292 (405)
T KOG1273|consen 273 ALYIWEKSIG--SLVKILHGTK 292 (405)
T ss_pred eEEEEecCCc--ceeeeecCCc
Confidence 7999887775 5555555443
No 201
>KOG0265 consensus U5 snRNP-specific protein-like factor and related proteins [RNA processing and modification]
Probab=98.85 E-value=1.5e-06 Score=86.61 Aligned_cols=252 Identities=12% Similarity=0.095 Sum_probs=157.4
Q ss_pred CcccceEeccCCCeEEEEEeeccccCCCCcceEEEEECCCCce--eecccCCCccccccccceEEecCCeEEEEEecCCC
Q 002209 189 AKLNFVTWSQDGKHLAFSIRIDAEDSSSSKLRVWVADVDTGKA--RPLFQSPDIYLNAIFDNFVWVNNSTLLVCTIPLLR 266 (953)
Q Consensus 189 ~~~~~~~wSPDG~~laf~~~~~~~~~~~~~~~l~~~d~~~g~~--~~lt~~~~~~~~~~~~~~~wspDg~~l~~~~~~~~ 266 (953)
+.+....|+|||..+|. +.....|++|++.+-.. ..+..+. +.+-.+.|.+||..|+...
T Consensus 48 geI~~~~F~P~gs~~aS---------gG~Dr~I~LWnv~gdceN~~~lkgHs-----gAVM~l~~~~d~s~i~S~g---- 109 (338)
T KOG0265|consen 48 GEIYTIKFHPDGSCFAS---------GGSDRAIVLWNVYGDCENFWVLKGHS-----GAVMELHGMRDGSHILSCG---- 109 (338)
T ss_pred ceEEEEEECCCCCeEee---------cCCcceEEEEeccccccceeeecccc-----ceeEeeeeccCCCEEEEec----
Confidence 37889999999998887 34577889998776433 2333222 2267899999999999762
Q ss_pred CCCCCCCCCCCCCceeecCCCccccchhhhhhcCCcchhhhhhhhccceEEEEEc-CCce-eEeCCC-CcccccccCCCC
Q 002209 267 GDPPKKPLVPLGPKMQSNEKRDIIQVRTFQDLLKDEYDEDLFDYYATTQLVLVSL-DGTV-KEIGPP-AVYTSLDPSPDE 343 (953)
Q Consensus 267 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~l~~~~~-~g~~-~~l~~~-~~~~~~~~SpDG 343 (953)
....++.+|+ +|+. ++.-.. ..+..+..+.=|
T Consensus 110 ---------------------------------------------tDk~v~~wD~~tG~~~rk~k~h~~~vNs~~p~rrg 144 (338)
T KOG0265|consen 110 ---------------------------------------------TDKTVRGWDAETGKRIRKHKGHTSFVNSLDPSRRG 144 (338)
T ss_pred ---------------------------------------------CCceEEEEecccceeeehhccccceeeecCccccC
Confidence 2245677888 7754 334333 556666667677
Q ss_pred cEEEEEEecCCccccccCCCCCcceEEEeccCceEEEeccCCCcccCCccccccccCccceeeccCCCCceEEEEeccCC
Q 002209 344 KYILISSIHRPYSFIVPCGRFPRQVGVWTTDGIFVRELCDLPLAEDIPIAFNSVRKGMRSINWRSDKPSTLYWAETQDGG 423 (953)
Q Consensus 344 ~~l~~~~~~~~~~~~~~~~~~~~~i~~~d~~g~~~~~l~~~~~~~~~p~~~~~~~~~~~~~~wspDg~~i~~~~~~~~~~ 423 (953)
-.++.+..+ .+++.+||+..++..++.... ....++.|.-++..+.-.
T Consensus 145 ~~lv~Sgsd------------D~t~kl~D~R~k~~~~t~~~k-------------yqltAv~f~d~s~qv~sg------- 192 (338)
T KOG0265|consen 145 PQLVCSGSD------------DGTLKLWDIRKKEAIKTFENK-------------YQLTAVGFKDTSDQVISG------- 192 (338)
T ss_pred CeEEEecCC------------CceEEEEeecccchhhccccc-------------eeEEEEEecccccceeec-------
Confidence 777776643 358999999865533322111 112356777766654332
Q ss_pred CcccccccCCeEEEEecCCCCCCCceEEeecccccCCeeeccCCceEEEEEecccCceEEEEEcCCCCCCCcEEeecCCC
Q 002209 424 DAKVEVTPRDIIYTQQAEPVQGEGPEILHKLDLRYGGISWCDDSLALVYESWYKTRRTRTWVISPGSKDVAPRILFDRSS 503 (953)
Q Consensus 424 ~~~~~~~~~~~l~~~d~~~~~g~~~~~l~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~ 503 (953)
.-.+.|-+||+ ..+.-...+..+...+.+++.||+|.++...+.+... ++|.+.+-........++....
T Consensus 193 ------gIdn~ikvWd~--r~~d~~~~lsGh~DtIt~lsls~~gs~llsnsMd~tv--rvwd~rp~~p~~R~v~if~g~~ 262 (338)
T KOG0265|consen 193 ------GIDNDIKVWDL--RKNDGLYTLSGHADTITGLSLSRYGSFLLSNSMDNTV--RVWDVRPFAPSQRCVKIFQGHI 262 (338)
T ss_pred ------cccCceeeecc--ccCcceEEeecccCceeeEEeccCCCccccccccceE--EEEEecccCCCCceEEEeecch
Confidence 33556778885 3333334456666677889999999998877666543 6777766554222244444332
Q ss_pred ccccCCCCCCCeEeccCCCEEEEEeeeccCCCcEEEEecCCCCCCCCCCeEEEEECCCCceEEEe
Q 002209 504 EDVYSDPGSPMMRRTSTGTYVIAKIKKENDEGTYILLNGNGATPEGNIPFLDLFDINTGSKERIW 568 (953)
Q Consensus 504 ~~~~~~~~~p~~~~SpDG~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~d~~~~~~~~l~ 568 (953)
....- ....-+|||+++.+.+.+.+. ++|+||..+....-.+
T Consensus 263 hnfek--nlL~cswsp~~~~i~ags~dr---------------------~vyvwd~~~r~~lykl 304 (338)
T KOG0265|consen 263 HNFEK--NLLKCSWSPNGTKITAGSADR---------------------FVYVWDTTSRRILYKL 304 (338)
T ss_pred hhhhh--hcceeeccCCCCccccccccc---------------------eEEEeecccccEEEEc
Confidence 21110 111157999999998887543 5999998765544333
No 202
>PLN00181 protein SPA1-RELATED; Provisional
Probab=98.84 E-value=2.4e-06 Score=105.54 Aligned_cols=229 Identities=12% Similarity=0.151 Sum_probs=131.4
Q ss_pred CcccceEeccCCCeEEEEEeeccccCCCCcceEEEEECCCCce--e----ecccCCCccccccccceEEecC-CeEEEEE
Q 002209 189 AKLNFVTWSQDGKHLAFSIRIDAEDSSSSKLRVWVADVDTGKA--R----PLFQSPDIYLNAIFDNFVWVNN-STLLVCT 261 (953)
Q Consensus 189 ~~~~~~~wSPDG~~laf~~~~~~~~~~~~~~~l~~~d~~~g~~--~----~lt~~~~~~~~~~~~~~~wspD-g~~l~~~ 261 (953)
..+....|+|||++||... ....|.+|+...... . .+..... ...+..+.|++. +..|+.+
T Consensus 484 ~~V~~i~fs~dg~~latgg---------~D~~I~iwd~~~~~~~~~~~~~~~~~~~~---~~~v~~l~~~~~~~~~las~ 551 (793)
T PLN00181 484 NLVCAIGFDRDGEFFATAG---------VNKKIKIFECESIIKDGRDIHYPVVELAS---RSKLSGICWNSYIKSQVASS 551 (793)
T ss_pred CcEEEEEECCCCCEEEEEe---------CCCEEEEEECCcccccccccccceEEecc---cCceeeEEeccCCCCEEEEE
Confidence 4688899999999988754 245666666543110 0 0000000 111567889864 5666654
Q ss_pred ecCCCCCCCCCCCCCCCCceeecCCCccccchhhhhhcCCcchhhhhhhhccceEEEEEc-CCc-eeEeCCC-Ccccccc
Q 002209 262 IPLLRGDPPKKPLVPLGPKMQSNEKRDIIQVRTFQDLLKDEYDEDLFDYYATTQLVLVSL-DGT-VKEIGPP-AVYTSLD 338 (953)
Q Consensus 262 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~l~~~~~-~g~-~~~l~~~-~~~~~~~ 338 (953)
. ..+.|.++|+ +++ ...+... ..+..++
T Consensus 552 ~-------------------------------------------------~Dg~v~lWd~~~~~~~~~~~~H~~~V~~l~ 582 (793)
T PLN00181 552 N-------------------------------------------------FEGVVQVWDVARSQLVTEMKEHEKRVWSID 582 (793)
T ss_pred e-------------------------------------------------CCCeEEEEECCCCeEEEEecCCCCCEEEEE
Confidence 1 2245667787 664 3444444 7788999
Q ss_pred cCC-CCcEEEEEEecCCccccccCCCCCcceEEEeccCce-EEEeccCCCcccCCccccccccCccceeec-cCCCCceE
Q 002209 339 PSP-DEKYILISSIHRPYSFIVPCGRFPRQVGVWTTDGIF-VRELCDLPLAEDIPIAFNSVRKGMRSINWR-SDKPSTLY 415 (953)
Q Consensus 339 ~Sp-DG~~l~~~~~~~~~~~~~~~~~~~~~i~~~d~~g~~-~~~l~~~~~~~~~p~~~~~~~~~~~~~~ws-pDg~~i~~ 415 (953)
|+| ||..|+..+.+ +.|.+||+..+. ...+... ..+..+.|+ ++|..++.
T Consensus 583 ~~p~~~~~L~Sgs~D-------------g~v~iWd~~~~~~~~~~~~~--------------~~v~~v~~~~~~g~~lat 635 (793)
T PLN00181 583 YSSADPTLLASGSDD-------------GSVKLWSINQGVSIGTIKTK--------------ANICCVQFPSESGRSLAF 635 (793)
T ss_pred EcCCCCCEEEEEcCC-------------CEEEEEECCCCcEEEEEecC--------------CCeEEEEEeCCCCCEEEE
Confidence 997 78888777644 389999998543 2233221 123457784 56776665
Q ss_pred EEEeccCCCcccccccCCeEEEEecCCCCCCC-ceEEeecccccCCeeeccCCceEEEEEecccCceEEEEEcCCCC--C
Q 002209 416 WAETQDGGDAKVEVTPRDIIYTQQAEPVQGEG-PEILHKLDLRYGGISWCDDSLALVYESWYKTRRTRTWVISPGSK--D 492 (953)
Q Consensus 416 ~~~~~~~~~~~~~~~~~~~l~~~d~~~~~g~~-~~~l~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~l~~~d~~~~--~ 492 (953)
. +..+.|++||+ .++.. ...+..+...+..+.|+ |+..|+.++.++. .+||.+..... .
T Consensus 636 g-------------s~dg~I~iwD~--~~~~~~~~~~~~h~~~V~~v~f~-~~~~lvs~s~D~~--ikiWd~~~~~~~~~ 697 (793)
T PLN00181 636 G-------------SADHKVYYYDL--RNPKLPLCTMIGHSKTVSYVRFV-DSSTLVSSSTDNT--LKLWDLSMSISGIN 697 (793)
T ss_pred E-------------eCCCeEEEEEC--CCCCccceEecCCCCCEEEEEEe-CCCEEEEEECCCE--EEEEeCCCCccccC
Confidence 5 44668999996 22221 23344555667778897 7777777665442 35665542210 0
Q ss_pred CCcEEeecCCCccccCCCCCCCeEeccCCCEEEEEee
Q 002209 493 VAPRILFDRSSEDVYSDPGSPMMRRTSTGTYVIAKIK 529 (953)
Q Consensus 493 ~~~~~~~~~~~~~~~~~~~~p~~~~SpDG~~l~~~~~ 529 (953)
..+..........+. .+.|+|+|++|+....
T Consensus 698 ~~~l~~~~gh~~~i~------~v~~s~~~~~lasgs~ 728 (793)
T PLN00181 698 ETPLHSFMGHTNVKN------FVGLSVSDGYIATGSE 728 (793)
T ss_pred CcceEEEcCCCCCee------EEEEcCCCCEEEEEeC
Confidence 112222222211111 1779999998887763
No 203
>PF00561 Abhydrolase_1: alpha/beta hydrolase fold A web page of Esterases and alpha/beta hydrolases.; InterPro: IPR000073 The alpha/beta hydrolase fold [] is common to a number of hydrolytic enzymes of widely differing phylogenetic origin and catalytic function. The core of each enzyme is an alpha/beta-sheet (rather than a barrel), containing 8 strands connected by helices []. The enzymes are believed to have diverged from a common ancestor, preserving the arrangement of the catalytic residues. All have a catalytic triad, the elements of which are borne on loops, which are the best conserved structural features of the fold. Esterase (EST) from Pseudomonas putida is a member of the alpha/beta hydrolase fold superfamily of enzymes []. In most of the family members the beta-strands are parallels, but some have an inversion of the first strands, which gives it an antiparallel orientation. The catalytic triad residues are presented on loops. One of these is the nucleophile elbow and is the most conserved feature of the fold. Some other members lack one or all of the catalytic residues. Some members are therefore inactive but others are involved in surface recognition. The ESTHER database [] gathers and annotates all the published information related to gene and protein sequences of this superfamily []. This entry represents fold-1 of alpha/beta hydrolase.; PDB: 2VAT_E 2VAX_C 2VAV_H 2PSJ_A 2PSH_B 2PSE_A 2PSF_A 2PSD_A 2EDA_A 1CIJ_A ....
Probab=98.83 E-value=3.2e-09 Score=110.17 Aligned_cols=154 Identities=19% Similarity=0.224 Sum_probs=98.3
Q ss_pred cEEEEcCCCCCCCCCChhh--hhhhHHHHHHHHHHHHHHHHHcCCCCCCcEEEEEeChHHHHHHHHHHhCCCcccEEEEc
Q 002209 713 FAILGGPTTPIIGEGDEEA--NDRFVEQLVACAEAAVEEVVRRGVAHPSKIAVGGHSYGAFMTANLLAHAPHLFCCGIAR 790 (953)
Q Consensus 713 ~~V~~~~~~~~~G~G~~~~--~~~~~~~~~~D~~~~~~~l~~~~~~d~~~i~l~G~S~GG~~a~~~a~~~p~~~~a~v~~ 790 (953)
|.|++ .+.+|.|.+.. ....-.....|+.+.++.+++.-.+ +++.++||||||.+++.+++.+|++++++|+.
T Consensus 1 f~vi~---~d~rG~g~S~~~~~~~~~~~~~~~~~~~~~~~~~~l~~--~~~~~vG~S~Gg~~~~~~a~~~p~~v~~lvl~ 75 (230)
T PF00561_consen 1 FDVIL---FDLRGFGYSSPHWDPDFPDYTTDDLAADLEALREALGI--KKINLVGHSMGGMLALEYAAQYPERVKKLVLI 75 (230)
T ss_dssp EEEEE---EECTTSTTSSSCCGSGSCTHCHHHHHHHHHHHHHHHTT--SSEEEEEETHHHHHHHHHHHHSGGGEEEEEEE
T ss_pred CEEEE---EeCCCCCCCCCCccCCcccccHHHHHHHHHHHHHHhCC--CCeEEEEECCChHHHHHHHHHCchhhcCcEEE
Confidence 56888 45567777753 1233334466667777777665333 45999999999999999999999999999999
Q ss_pred ccCC--C----CCCCCc-Ccccc---------------------------cch---------hhh---h-----------
Q 002209 791 SGAY--N----RTLTPF-GFQNE---------------------------DRT---------LWE---A----------- 813 (953)
Q Consensus 791 ~~~~--d----~~~~~~-~~~~~---------------------------~~~---------~~~---~----------- 813 (953)
+++. . ...... .+... ... .+. .
T Consensus 76 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 155 (230)
T PF00561_consen 76 SPPPDLPDGLWNRIWPRGNLQGQLLDNFFNFLSDPIKPLLGRWPKQFFAYDREFVEDFLKQFQSQQYARFAETDAFDNMF 155 (230)
T ss_dssp SESSHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHTCHHHHHHHHH
T ss_pred eeeccchhhhhHHHHhhhhhhhhHHHhhhccccccchhhhhhhhhheeeccCccccchhhccchhhhhHHHHHHHHhhhc
Confidence 8851 0 000000 00000 000 000 0
Q ss_pred ---HHHHHhcCcccccCCCCCcEEEEEeCCCCCCCCchHHHHHHHHHHHhCCCcEEEEEeCCCCccC
Q 002209 814 ---TSTYVEMSPFMSANKLKKPILLVHGEEDNNSGTLTMQSDRFFNALKGHGALCRLVILPFESHGY 877 (953)
Q Consensus 814 ---~~~~~~~sp~~~~~~i~~P~Li~~G~~D~~v~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~H~~ 877 (953)
...+...++...+.++++|+|+++|++|..+| +....++.+.+.. .+++++++.||..
T Consensus 156 ~~~~~~~~~~~~~~~l~~i~~p~l~i~~~~D~~~p--~~~~~~~~~~~~~----~~~~~~~~~GH~~ 216 (230)
T PF00561_consen 156 WNALGYFSVWDPSPALSNIKVPTLIIWGEDDPLVP--PESSEQLAKLIPN----SQLVLIEGSGHFA 216 (230)
T ss_dssp HHHHHHHHHHHHHHHHTTTTSEEEEEEETTCSSSH--HHHHHHHHHHSTT----EEEEEETTCCSTH
T ss_pred cccccccccccccccccccCCCeEEEEeCCCCCCC--HHHHHHHHHhcCC----CEEEECCCCChHH
Confidence 00111122234556799999999999999998 8877775544433 6899999999975
No 204
>KOG0639 consensus Transducin-like enhancer of split protein (contains WD40 repeats) [Chromatin structure and dynamics]
Probab=98.83 E-value=1.5e-07 Score=99.22 Aligned_cols=217 Identities=11% Similarity=0.092 Sum_probs=145.5
Q ss_pred ceEEEEccCCCCCCceeeeecCCCCCcccceEeccCCCeEEEEEeeccccCCCCcceEEEEECCCCcee---ecccCCCc
Q 002209 164 GIGIHQLFPDGKLGQEIEIQGFPDGAKLNFVTWSQDGKHLAFSIRIDAEDSSSSKLRVWVADVDTGKAR---PLFQSPDI 240 (953)
Q Consensus 164 ~i~i~~~~~~g~~~~~~~l~~~~~~~~~~~~~wSPDG~~laf~~~~~~~~~~~~~~~l~~~d~~~g~~~---~lt~~~~~ 240 (953)
-|.|||+...|......+|..+..+..++.-..+|||+.|+. +.+...|-+||+..-..+ +|+...-.
T Consensus 441 cVKVWdis~pg~k~PvsqLdcl~rdnyiRSckL~pdgrtLiv---------GGeastlsiWDLAapTprikaeltssapa 511 (705)
T KOG0639|consen 441 CVKVWDISQPGNKSPVSQLDCLNRDNYIRSCKLLPDGRTLIV---------GGEASTLSIWDLAAPTPRIKAELTSSAPA 511 (705)
T ss_pred eEEEeeccCCCCCCccccccccCcccceeeeEecCCCceEEe---------ccccceeeeeeccCCCcchhhhcCCcchh
Confidence 678999976554444455666666668899999999999998 445677778887765443 23322111
Q ss_pred cccccccceEEecCCeEEEEEecCCCCCCCCCCCCCCCCceeecCCCccccchhhhhhcCCcchhhhhhhhccceEEEEE
Q 002209 241 YLNAIFDNFVWVNNSTLLVCTIPLLRGDPPKKPLVPLGPKMQSNEKRDIIQVRTFQDLLKDEYDEDLFDYYATTQLVLVS 320 (953)
Q Consensus 241 ~~~~~~~~~~wspDg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~l~~~~ 320 (953)
-..++.|||.+..|.. ...++|.++|
T Consensus 512 -----CyALa~spDakvcFsc-------------------------------------------------csdGnI~vwD 537 (705)
T KOG0639|consen 512 -----CYALAISPDAKVCFSC-------------------------------------------------CSDGNIAVWD 537 (705)
T ss_pred -----hhhhhcCCccceeeee-------------------------------------------------ccCCcEEEEE
Confidence 2367789999876644 1335788889
Q ss_pred c-CCc-eeEeCCC-CcccccccCCCCcEEEEEEecCCccccccCCCCCcceEEEeccCceEEEeccCCCcccCCcccccc
Q 002209 321 L-DGT-VKEIGPP-AVYTSLDPSPDEKYILISSIHRPYSFIVPCGRFPRQVGVWTTDGIFVRELCDLPLAEDIPIAFNSV 397 (953)
Q Consensus 321 ~-~g~-~~~l~~~-~~~~~~~~SpDG~~l~~~~~~~~~~~~~~~~~~~~~i~~~d~~g~~~~~l~~~~~~~~~p~~~~~~ 397 (953)
+ +.. ++.+... ++...+.+|+||..|..... ...+.-||+..+ +++..+...
T Consensus 538 Lhnq~~VrqfqGhtDGascIdis~dGtklWTGGl-------------DntvRcWDlreg--rqlqqhdF~---------- 592 (705)
T KOG0639|consen 538 LHNQTLVRQFQGHTDGASCIDISKDGTKLWTGGL-------------DNTVRCWDLREG--RQLQQHDFS---------- 592 (705)
T ss_pred cccceeeecccCCCCCceeEEecCCCceeecCCC-------------ccceeehhhhhh--hhhhhhhhh----------
Confidence 9 664 4445444 88899999999998865543 348889999732 233332221
Q ss_pred ccCccceeeccCCCCceEEEEeccCCCcccccccCCeEEEEecCCCCCCCceEEeecccccCCeeeccCCceEEEEEecc
Q 002209 398 RKGMRSINWRSDKPSTLYWAETQDGGDAKVEVTPRDIIYTQQAEPVQGEGPEILHKLDLRYGGISWCDDSLALVYESWYK 477 (953)
Q Consensus 398 ~~~~~~~~wspDg~~i~~~~~~~~~~~~~~~~~~~~~l~~~d~~~~~g~~~~~l~~~~~~~~~~~~SpDg~~l~~~~~~~ 477 (953)
..+.++...|.|..++.. -+.+.+++... .+.+..+|..++.-+-++.|++-|++++....++
T Consensus 593 -SQIfSLg~cP~~dWlavG-------------Mens~vevlh~---skp~kyqlhlheScVLSlKFa~cGkwfvStGkDn 655 (705)
T KOG0639|consen 593 -SQIFSLGYCPTGDWLAVG-------------MENSNVEVLHT---SKPEKYQLHLHESCVLSLKFAYCGKWFVSTGKDN 655 (705)
T ss_pred -hhheecccCCCccceeee-------------cccCcEEEEec---CCccceeecccccEEEEEEecccCceeeecCchh
Confidence 123467788999988876 23456777764 5555667888888888899999999888765444
Q ss_pred cCceEEEEEc
Q 002209 478 TRRTRTWVIS 487 (953)
Q Consensus 478 ~~~~~l~~~d 487 (953)
- ...|+..
T Consensus 656 l--LnawrtP 663 (705)
T KOG0639|consen 656 L--LNAWRTP 663 (705)
T ss_pred h--hhhccCc
Confidence 2 2455544
No 205
>PTZ00421 coronin; Provisional
Probab=98.82 E-value=1.8e-06 Score=98.54 Aligned_cols=200 Identities=12% Similarity=0.006 Sum_probs=117.4
Q ss_pred CcccceEecc-CCCeEEEEEeeccccCCCCcceEEEEECCCCce--------eecccCCCccccccccceEEecCCe-EE
Q 002209 189 AKLNFVTWSQ-DGKHLAFSIRIDAEDSSSSKLRVWVADVDTGKA--------RPLFQSPDIYLNAIFDNFVWVNNST-LL 258 (953)
Q Consensus 189 ~~~~~~~wSP-DG~~laf~~~~~~~~~~~~~~~l~~~d~~~g~~--------~~lt~~~~~~~~~~~~~~~wspDg~-~l 258 (953)
..+....|+| |++.|+..+ .+..|.+|++..+.. ..+..+. ..+..+.|+|++. .|
T Consensus 76 ~~V~~v~fsP~d~~~LaSgS---------~DgtIkIWdi~~~~~~~~~~~~l~~L~gH~-----~~V~~l~f~P~~~~iL 141 (493)
T PTZ00421 76 GPIIDVAFNPFDPQKLFTAS---------EDGTIMGWGIPEEGLTQNISDPIVHLQGHT-----KKVGIVSFHPSAMNVL 141 (493)
T ss_pred CCEEEEEEcCCCCCEEEEEe---------CCCEEEEEecCCCccccccCcceEEecCCC-----CcEEEEEeCcCCCCEE
Confidence 4689999999 888887754 245667777654321 1222222 1267899999874 55
Q ss_pred EEEecCCCCCCCCCCCCCCCCceeecCCCccccchhhhhhcCCcchhhhhhhhccceEEEEEc-CCce-eEeCCC-Cccc
Q 002209 259 VCTIPLLRGDPPKKPLVPLGPKMQSNEKRDIIQVRTFQDLLKDEYDEDLFDYYATTQLVLVSL-DGTV-KEIGPP-AVYT 335 (953)
Q Consensus 259 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~l~~~~~-~g~~-~~l~~~-~~~~ 335 (953)
+.+. ....|.++|+ +++. ..+... ..+.
T Consensus 142 aSgs-------------------------------------------------~DgtVrIWDl~tg~~~~~l~~h~~~V~ 172 (493)
T PTZ00421 142 ASAG-------------------------------------------------ADMVVNVWDVERGKAVEVIKCHSDQIT 172 (493)
T ss_pred EEEe-------------------------------------------------CCCEEEEEECCCCeEEEEEcCCCCceE
Confidence 5441 2245667788 6644 334333 6788
Q ss_pred ccccCCCCcEEEEEEecCCccccccCCCCCcceEEEeccCce-EEEeccCCCcccCCccccccccCccceeeccCCCCce
Q 002209 336 SLDPSPDEKYILISSIHRPYSFIVPCGRFPRQVGVWTTDGIF-VRELCDLPLAEDIPIAFNSVRKGMRSINWRSDKPSTL 414 (953)
Q Consensus 336 ~~~~SpDG~~l~~~~~~~~~~~~~~~~~~~~~i~~~d~~g~~-~~~l~~~~~~~~~p~~~~~~~~~~~~~~wspDg~~i~ 414 (953)
+++|+|||+.|+..+.+. .|.+||+..+. ...+..+... ......|.+++..++
T Consensus 173 sla~spdG~lLatgs~Dg-------------~IrIwD~rsg~~v~tl~~H~~~------------~~~~~~w~~~~~~iv 227 (493)
T PTZ00421 173 SLEWNLDGSLLCTTSKDK-------------KLNIIDPRDGTIVSSVEAHASA------------KSQRCLWAKRKDLII 227 (493)
T ss_pred EEEEECCCCEEEEecCCC-------------EEEEEECCCCcEEEEEecCCCC------------cceEEEEcCCCCeEE
Confidence 999999999988877443 89999997543 3334332211 112467999887655
Q ss_pred EEEEeccCCCcccccccCCeEEEEecCCCCCCCceEEeecc--cccCCeeeccCCceEEEEEecccCceEEEEEcCCC
Q 002209 415 YWAETQDGGDAKVEVTPRDIIYTQQAEPVQGEGPEILHKLD--LRYGGISWCDDSLALVYESWYKTRRTRTWVISPGS 490 (953)
Q Consensus 415 ~~~~~~~~~~~~~~~~~~~~l~~~d~~~~~g~~~~~l~~~~--~~~~~~~~SpDg~~l~~~~~~~~~~~~l~~~d~~~ 490 (953)
... .. .+....|.+||+ .+...+......+ .....+.|++|++.|+.....+ + .|..+++..
T Consensus 228 t~G-~s--------~s~Dr~VklWDl--r~~~~p~~~~~~d~~~~~~~~~~d~d~~~L~lggkgD-g--~Iriwdl~~ 291 (493)
T PTZ00421 228 TLG-CS--------KSQQRQIMLWDT--RKMASPYSTVDLDQSSALFIPFFDEDTNLLYIGSKGE-G--NIRCFELMN 291 (493)
T ss_pred EEe-cC--------CCCCCeEEEEeC--CCCCCceeEeccCCCCceEEEEEcCCCCEEEEEEeCC-C--eEEEEEeeC
Confidence 431 00 022457889996 2222232222111 1233467999999887765433 2 344445544
No 206
>KOG0275 consensus Conserved WD40 repeat-containing protein [General function prediction only]
Probab=98.80 E-value=5.2e-08 Score=96.97 Aligned_cols=255 Identities=11% Similarity=0.110 Sum_probs=154.7
Q ss_pred CCCceecCCCCEEEEEecCCCCCccccccccce-----------------eceEEecCCCCCCcceeeeeceEEEEccCC
Q 002209 111 LPALSFSPQRDKILFLKRRALPPLEELARPEEK-----------------LAGLRIDGKCNTRSRMSFYTGIGIHQLFPD 173 (953)
Q Consensus 111 ~~~~~~SPDG~~la~~~~~~~~~~~~~~~~~~~-----------------~~~~~~~~~~~~~~~~~~~~~i~i~~~~~~ 173 (953)
+....|||||++|+..+.++-.++|++.....+ .--+.|+.+.......+-++.|.||.+.+
T Consensus 216 ~EcA~FSPDgqyLvsgSvDGFiEVWny~~GKlrKDLkYQAqd~fMMmd~aVlci~FSRDsEMlAsGsqDGkIKvWri~t- 294 (508)
T KOG0275|consen 216 VECARFSPDGQYLVSGSVDGFIEVWNYTTGKLRKDLKYQAQDNFMMMDDAVLCISFSRDSEMLASGSQDGKIKVWRIET- 294 (508)
T ss_pred hhheeeCCCCceEeeccccceeeeehhccchhhhhhhhhhhcceeecccceEEEeecccHHHhhccCcCCcEEEEEEec-
Confidence 456789999999999998877777777644322 01133444444444445557899999965
Q ss_pred CCCCce-eeee-cCCCCCcccceEeccCCCeEEEEEeeccccCCCCcceEEEEECCCCceeecccCCCccccccccceEE
Q 002209 174 GKLGQE-IEIQ-GFPDGAKLNFVTWSQDGKHLAFSIRIDAEDSSSSKLRVWVADVDTGKARPLFQSPDIYLNAIFDNFVW 251 (953)
Q Consensus 174 g~~~~~-~~l~-~~~~~~~~~~~~wSPDG~~laf~~~~~~~~~~~~~~~l~~~d~~~g~~~~lt~~~~~~~~~~~~~~~w 251 (953)
++. +++. .++ ..+...+||.|+.+|+-.+. ...+.+.-+.+|+..+-..+.... +....|
T Consensus 295 ---G~ClRrFdrAHt--kGvt~l~FSrD~SqiLS~sf---------D~tvRiHGlKSGK~LKEfrGHsSy----vn~a~f 356 (508)
T KOG0275|consen 295 ---GQCLRRFDRAHT--KGVTCLSFSRDNSQILSASF---------DQTVRIHGLKSGKCLKEFRGHSSY----VNEATF 356 (508)
T ss_pred ---chHHHHhhhhhc--cCeeEEEEccCcchhhcccc---------cceEEEeccccchhHHHhcCcccc----ccceEE
Confidence 332 2222 122 36899999999999997542 556777778888764443333322 668889
Q ss_pred ecCCeEEEEEecCCCCCCCCCCCCCCCCceeecCCCccccchhhhhhcCCcchhhhhhhhccceEEEEEc-CCc----ee
Q 002209 252 VNNSTLLVCTIPLLRGDPPKKPLVPLGPKMQSNEKRDIIQVRTFQDLLKDEYDEDLFDYYATTQLVLVSL-DGT----VK 326 (953)
Q Consensus 252 spDg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~l~~~~~-~g~----~~ 326 (953)
++||..|...+.+ +.+-+++. +++ .+
T Consensus 357 t~dG~~iisaSsD-------------------------------------------------gtvkvW~~KtteC~~Tfk 387 (508)
T KOG0275|consen 357 TDDGHHIISASSD-------------------------------------------------GTVKVWHGKTTECLSTFK 387 (508)
T ss_pred cCCCCeEEEecCC-------------------------------------------------ccEEEecCcchhhhhhcc
Confidence 9999988865211 12223333 321 12
Q ss_pred EeCCCCcccccccCCCC-cEEEEEEecCCccccccCCCCCcceEEEeccCceEEEeccCCCcccCCccccccccCcccee
Q 002209 327 EIGPPAVYTSLDPSPDE-KYILISSIHRPYSFIVPCGRFPRQVGVWTTDGIFVRELCDLPLAEDIPIAFNSVRKGMRSIN 405 (953)
Q Consensus 327 ~l~~~~~~~~~~~SpDG-~~l~~~~~~~~~~~~~~~~~~~~~i~~~d~~g~~~~~l~~~~~~~~~p~~~~~~~~~~~~~~ 405 (953)
.+.+...+.++-.-|.. .++++ .++ .+.++++++.|.-++..+...... +..-+..
T Consensus 388 ~~~~d~~vnsv~~~PKnpeh~iV-CNr------------sntv~imn~qGQvVrsfsSGkREg----------GdFi~~~ 444 (508)
T KOG0275|consen 388 PLGTDYPVNSVILLPKNPEHFIV-CNR------------SNTVYIMNMQGQVVRSFSSGKREG----------GDFINAI 444 (508)
T ss_pred CCCCcccceeEEEcCCCCceEEE-EcC------------CCeEEEEeccceEEeeeccCCccC----------CceEEEE
Confidence 22222333344444432 22322 222 238999999998888776643221 1123467
Q ss_pred eccCCCCceEEEEeccCCCcccccccCCeEEEEecCCCCCCCceEEeecccccCCeeeccCCceEE
Q 002209 406 WRSDKPSTLYWAETQDGGDAKVEVTPRDIIYTQQAEPVQGEGPEILHKLDLRYGGISWCDDSLALV 471 (953)
Q Consensus 406 wspDg~~i~~~~~~~~~~~~~~~~~~~~~l~~~d~~~~~g~~~~~l~~~~~~~~~~~~SpDg~~l~ 471 (953)
.||-|..|+.. ++...+|.+.. ..|+-.+.+.-++.++-+++-.|-...|+
T Consensus 445 lSpkGewiYci-------------gED~vlYCF~~--~sG~LE~tl~VhEkdvIGl~HHPHqNllA 495 (508)
T KOG0275|consen 445 LSPKGEWIYCI-------------GEDGVLYCFSV--LSGKLERTLPVHEKDVIGLTHHPHQNLLA 495 (508)
T ss_pred ecCCCcEEEEE-------------ccCcEEEEEEe--ecCceeeeeecccccccccccCcccchhh
Confidence 89999988776 55667888875 45555566666676777777777665554
No 207
>KOG2112 consensus Lysophospholipase [Lipid transport and metabolism]
Probab=98.80 E-value=1.8e-07 Score=89.65 Aligned_cols=115 Identities=22% Similarity=0.225 Sum_probs=87.5
Q ss_pred CCCCCcEEEEEeChHHHHHHHHHHhCCCcccEEEEcccCCCCCCCCcCcccccchhhhhHHHHHhcCcccccCCCCCcEE
Q 002209 755 VAHPSKIAVGGHSYGAFMTANLLAHAPHLFCCGIARSGAYNRTLTPFGFQNEDRTLWEATSTYVEMSPFMSANKLKKPIL 834 (953)
Q Consensus 755 ~~d~~~i~l~G~S~GG~~a~~~a~~~p~~~~a~v~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~sp~~~~~~i~~P~L 834 (953)
.++.+||++.|.|+||.++++++..+|....+.+..+++....... + ...-+. .+ ..|++
T Consensus 89 Gi~~~rI~igGfs~G~a~aL~~~~~~~~~l~G~~~~s~~~p~~~~~--~--------------~~~~~~---~~-~~~i~ 148 (206)
T KOG2112|consen 89 GIPSNRIGIGGFSQGGALALYSALTYPKALGGIFALSGFLPRASIG--L--------------PGWLPG---VN-YTPIL 148 (206)
T ss_pred CCCccceeEcccCchHHHHHHHHhccccccceeeccccccccchhh--c--------------cCCccc---cC-cchhh
Confidence 4788999999999999999999999976666666666654321111 0 000010 01 68999
Q ss_pred EEEeCCCCCCCCchHHHHHHHHHHHhCCCcEEEEEeCCCCccCCCcccHHHHHHHHHHHHHH
Q 002209 835 LVHGEEDNNSGTLTMQSDRFFNALKGHGALCRLVILPFESHGYAARESIMHVLWETDRWLQK 896 (953)
Q Consensus 835 i~~G~~D~~v~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~H~~~~~~~~~~~~~~i~~fl~~ 896 (953)
..||+.|+.|| ..-.....+.|+..+.++++..|+|.+|.... +-+..+..|+.+
T Consensus 149 ~~Hg~~d~~vp--~~~g~~s~~~l~~~~~~~~f~~y~g~~h~~~~-----~e~~~~~~~~~~ 203 (206)
T KOG2112|consen 149 LCHGTADPLVP--FRFGEKSAQFLKSLGVRVTFKPYPGLGHSTSP-----QELDDLKSWIKT 203 (206)
T ss_pred eecccCCceee--hHHHHHHHHHHHHcCCceeeeecCCccccccH-----HHHHHHHHHHHH
Confidence 99999999999 88899999999999999999999999998753 335667778776
No 208
>KOG2314 consensus Translation initiation factor 3, subunit b (eIF-3b) [Translation, ribosomal structure and biogenesis]
Probab=98.80 E-value=1.6e-06 Score=93.08 Aligned_cols=301 Identities=14% Similarity=0.206 Sum_probs=159.3
Q ss_pred HhhcCCCCCCceecCCCCEEEEEecCCCCCccccccccceeceEEecCCCCCCcceeeeeceEEEEccCCCCCCceeeee
Q 002209 104 EIVDAPPLPALSFSPQRDKILFLKRRALPPLEELARPEEKLAGLRIDGKCNTRSRMSFYTGIGIHQLFPDGKLGQEIEIQ 183 (953)
Q Consensus 104 ~~~~~~~~~~~~~SPDG~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~i~~~~~~g~~~~~~~l~ 183 (953)
+-+.-|.+....|||..++|+.-+.. + ...+++.+... .|.|||+.+ |.......+
T Consensus 245 ~RF~Hp~Vq~idfSP~EkYLVT~s~~--p--------------~~~~~~d~e~~------~l~IWDI~t-G~lkrsF~~- 300 (698)
T KOG2314|consen 245 QRFYHPGVQFIDFSPNEKYLVTYSPE--P--------------IIVEEDDNEGQ------QLIIWDIAT-GLLKRSFPV- 300 (698)
T ss_pred HhccCCCceeeecCCccceEEEecCC--c--------------cccCcccCCCc------eEEEEEccc-cchhcceec-
Confidence 33445678899999999999876653 0 01122222333 789999964 432222221
Q ss_pred cCCCCC-cccceEeccCCCeEEEEEeeccccCCCCcceEEEEECCCC-----ceeecccCCCccccccccceEEecCCeE
Q 002209 184 GFPDGA-KLNFVTWSQDGKHLAFSIRIDAEDSSSSKLRVWVADVDTG-----KARPLFQSPDIYLNAIFDNFVWVNNSTL 257 (953)
Q Consensus 184 ~~~~~~-~~~~~~wSPDG~~laf~~~~~~~~~~~~~~~l~~~d~~~g-----~~~~lt~~~~~~~~~~~~~~~wspDg~~ 257 (953)
..+.. .-....||-|+|++|-.. ...|-+++..+- +...+ ++ +..+.|||-+..
T Consensus 301 -~~~~~~~WP~frWS~DdKy~Arm~----------~~sisIyEtpsf~lld~Kslki---~g------Ir~FswsP~~~l 360 (698)
T KOG2314|consen 301 -IKSPYLKWPIFRWSHDDKYFARMT----------GNSISIYETPSFMLLDKKSLKI---SG------IRDFSWSPTSNL 360 (698)
T ss_pred -cCCCccccceEEeccCCceeEEec----------cceEEEEecCceeeecccccCC---cc------ccCcccCCCcce
Confidence 11111 334568999999888654 234555543321 11111 22 678999999999
Q ss_pred EEEEecCCCCCCCCCCCCCCCCceeecCCCccccchhhhhhcCCcchhhhhhhhccceEEEEEc-CCceeEeCCCCcc--
Q 002209 258 LVCTIPLLRGDPPKKPLVPLGPKMQSNEKRDIIQVRTFQDLLKDEYDEDLFDYYATTQLVLVSL-DGTVKEIGPPAVY-- 334 (953)
Q Consensus 258 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~l~~~~~-~g~~~~l~~~~~~-- 334 (953)
|+|.++.....+ ..+-++.+ ++..-+..+--++
T Consensus 361 lAYwtpe~~~~p--------------------------------------------arvtL~evPs~~~iRt~nlfnVsD 396 (698)
T KOG2314|consen 361 LAYWTPETNNIP--------------------------------------------ARVTLMEVPSKREIRTKNLFNVSD 396 (698)
T ss_pred EEEEcccccCCc--------------------------------------------ceEEEEecCccceeeeccceeeec
Confidence 999955433221 11223333 3321111110111
Q ss_pred cccccCCCCcEEEEEEecCCccccccCCCCCcceEEEeccCceEEEeccCCCcccCCccccccccCccceeeccCCCCce
Q 002209 335 TSLDPSPDEKYILISSIHRPYSFIVPCGRFPRQVGVWTTDGIFVRELCDLPLAEDIPIAFNSVRKGMRSINWRSDKPSTL 414 (953)
Q Consensus 335 ~~~~~SpDG~~l~~~~~~~~~~~~~~~~~~~~~i~~~d~~g~~~~~l~~~~~~~~~p~~~~~~~~~~~~~~wspDg~~i~ 414 (953)
.-+.|-..|++|.|-..+.+-.- ....-.++.++.+..+++ |.-......-+-.++|-|.|.+.+
T Consensus 397 ckLhWQk~gdyLcvkvdR~tK~~---~~g~f~n~eIfrireKdI------------pve~velke~vi~FaWEP~gdkF~ 461 (698)
T KOG2314|consen 397 CKLHWQKSGDYLCVKVDRHTKSK---VKGQFSNLEIFRIREKDI------------PVEVVELKESVIAFAWEPHGDKFA 461 (698)
T ss_pred cEEEeccCCcEEEEEEEeecccc---ccceEeeEEEEEeeccCC------------CceeeecchheeeeeeccCCCeEE
Confidence 23568889999999876542110 001112444444442221 111111112335689999999887
Q ss_pred EEEEeccCCCcccccccCC--eEEEEecCCCCCCCceEEeec-ccccCCeeeccCCceEEEEEecccCceEEEEEcCCCC
Q 002209 415 YWAETQDGGDAKVEVTPRD--IIYTQQAEPVQGEGPEILHKL-DLRYGGISWCDDSLALVYESWYKTRRTRTWVISPGSK 491 (953)
Q Consensus 415 ~~~~~~~~~~~~~~~~~~~--~l~~~d~~~~~g~~~~~l~~~-~~~~~~~~~SpDg~~l~~~~~~~~~~~~l~~~d~~~~ 491 (953)
...-. .... ..|-+.. ++++++.+..- ....+.+.|||.|+.++.+.-.. .+..|..+|++-.
T Consensus 462 vi~g~----------~~k~tvsfY~~e~---~~~~~~lVk~~dk~~~N~vfwsPkG~fvvva~l~s-~~g~l~F~D~~~a 527 (698)
T KOG2314|consen 462 VISGN----------TVKNTVSFYAVET---NIKKPSLVKELDKKFANTVFWSPKGRFVVVAALVS-RRGDLEFYDTDYA 527 (698)
T ss_pred EEEcc----------ccccceeEEEeec---CCCchhhhhhhcccccceEEEcCCCcEEEEEEecc-cccceEEEecchh
Confidence 76211 1122 3344432 44555444222 24457799999999998876543 3357888887642
Q ss_pred CCCcEEeecCCCccccCCCCCCCeEeccCCCEEEEEee
Q 002209 492 DVAPRILFDRSSEDVYSDPGSPMMRRTSTGTYVIAKIK 529 (953)
Q Consensus 492 ~~~~~~~~~~~~~~~~~~~~~p~~~~SpDG~~l~~~~~ 529 (953)
+.......+.. ..-.+.|.|-|++++..+.
T Consensus 528 ~~k~~~~~eh~--------~at~veWDPtGRYvvT~ss 557 (698)
T KOG2314|consen 528 DLKDTASPEHF--------AATEVEWDPTGRYVVTSSS 557 (698)
T ss_pred hhhhccCcccc--------ccccceECCCCCEEEEeee
Confidence 11111111111 1111679999999987763
No 209
>KOG3847 consensus Phospholipase A2 (platelet-activating factor acetylhydrolase in humans) [Lipid transport and metabolism]
Probab=98.80 E-value=1.1e-07 Score=95.32 Aligned_cols=190 Identities=18% Similarity=0.168 Sum_probs=117.6
Q ss_pred CCCccEEEEeCCCCCcCcCCCCcccCCCCCCCCccchHHHHHHHcCcEEEEcCCCCCCCC-------------CChh---
Q 002209 667 DGPLPCLFWSYPGEFKSKDAAGQVRGSPNEFPRIGSTSVLLWLARGFAILGGPTTPIIGE-------------GDEE--- 730 (953)
Q Consensus 667 ~~~~P~vv~~hGg~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~G~~V~~~~~~~~~G~-------------G~~~--- 730 (953)
.+++|+||+.||- + .++..+..+...||++||+|.++..+|.... +...
T Consensus 115 ~~k~PvvvFSHGL------------g---gsRt~YSa~c~~LAShG~VVaavEHRD~SA~~Ty~~~~~~~n~~lveq~~~ 179 (399)
T KOG3847|consen 115 NDKYPVVVFSHGL------------G---GSRTLYSAYCTSLASHGFVVAAVEHRDRSACWTYVLKEKHENEPLVEQWIK 179 (399)
T ss_pred CCCccEEEEeccc------------c---cchhhHHHHhhhHhhCceEEEEeecccCcceeEEEecccccCCcccccceE
Confidence 4569999999992 1 2334445566789999999999888776430 0000
Q ss_pred -----hhh-------hhHHHHHHHHHHHHHHHHHc---------------------CCCCCCcEEEEEeChHHHHHHHHH
Q 002209 731 -----AND-------RFVEQLVACAEAAVEEVVRR---------------------GVAHPSKIAVGGHSYGAFMTANLL 777 (953)
Q Consensus 731 -----~~~-------~~~~~~~~D~~~~~~~l~~~---------------------~~~d~~~i~l~G~S~GG~~a~~~a 777 (953)
.++ .-...-+..+..|++-|.+. +.+|..+++|+|||+||..++...
T Consensus 180 ir~v~~~ekef~irNeqv~~R~~Ec~~aL~il~~i~~g~~~~~~L~g~~~~~~~~K~nl~~s~~aViGHSFGgAT~i~~s 259 (399)
T KOG3847|consen 180 IRLVEANEKEFHIRNEQVGQRAQECQKALKILEQINDGGTPDNVLPGNNSDLEQLKGNLDTSQAAVIGHSFGGATSIASS 259 (399)
T ss_pred eeeeccCceeEEeeCHHHHHHHHHHHHHHHHHHHhhcCCCchhcccCccccHHHHhcchhhhhhhheeccccchhhhhhh
Confidence 000 11223355566666555432 246778899999999999999888
Q ss_pred HhCCCcccEEEEcccCCCCCCCCcCcccccchhhhhHHHHHhcCcccccCCCCCcEEEEEeCCCCCCCCchHHHHHHHHH
Q 002209 778 AHAPHLFCCGIARSGAYNRTLTPFGFQNEDRTLWEATSTYVEMSPFMSANKLKKPILLVHGEEDNNSGTLTMQSDRFFNA 857 (953)
Q Consensus 778 ~~~p~~~~a~v~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~sp~~~~~~i~~P~Li~~G~~D~~v~~~~~~~~~~~~~ 857 (953)
+.+ ..|+|+|+..+. +.+... ....+++-|+|++.- .|.. ..++....++
T Consensus 260 s~~-t~FrcaI~lD~W----M~Pl~~--------------------~~~~~arqP~~finv-~~fQ----~~en~~vmKk 309 (399)
T KOG3847|consen 260 SSH-TDFRCAIALDAW----MFPLDQ--------------------LQYSQARQPTLFINV-EDFQ----WNENLLVMKK 309 (399)
T ss_pred ccc-cceeeeeeeeee----ecccch--------------------hhhhhccCCeEEEEc-cccc----chhHHHHHHh
Confidence 877 569999987652 111100 122346789999983 3544 3344555555
Q ss_pred HHhCCCcEEEEEeCCCCccCC-C---------------------cccHHHHHHHHHHHHHHhccCC
Q 002209 858 LKGHGALCRLVILPFESHGYA-A---------------------RESIMHVLWETDRWLQKYCVSN 901 (953)
Q Consensus 858 l~~~g~~~~~~~~~~~~H~~~-~---------------------~~~~~~~~~~i~~fl~~~l~~~ 901 (953)
+...+..-.++.+.|+=|.-. . .+..+...+..++||++++...
T Consensus 310 i~~~n~g~~~it~~GsVHqnfsDfpfv~p~~i~k~f~~kg~~dpy~~~~~~~r~slaFLq~h~d~~ 375 (399)
T KOG3847|consen 310 IESQNEGNHVITLDGSVHQNFSDFPFVTPNWIGKVFKVKGETDPYEAMQIAIRASLAFLQKHLDLV 375 (399)
T ss_pred hhCCCccceEEEEccceecccccCccccHHHHHHHhccCCCCChHHHHHHHHHHHHHHHHhhhhhh
Confidence 555555557778888877421 0 1112344567889999987543
No 210
>PF05728 UPF0227: Uncharacterised protein family (UPF0227); InterPro: IPR008886 Despite being classed as uncharacterised proteins, the members of this family are almost certainly enzymes in that they contain a domain distantly related to IPR000073 from INTERPRO. One of the members of this family YqiA has been shown to be a esterase []. Other members, which include the Escherichia coli (strain K12) YcfP protein are uncharacterised.
Probab=98.79 E-value=2.4e-07 Score=90.70 Aligned_cols=122 Identities=13% Similarity=0.119 Sum_probs=72.5
Q ss_pred CCcEEEEEeChHHHHHHHHHHhCCCcccEEEEcccCCCCCCC--C-cCc---ccccchhhhhHHHHHhcCccccc-CCCC
Q 002209 758 PSKIAVGGHSYGAFMTANLLAHAPHLFCCGIARSGAYNRTLT--P-FGF---QNEDRTLWEATSTYVEMSPFMSA-NKLK 830 (953)
Q Consensus 758 ~~~i~l~G~S~GG~~a~~~a~~~p~~~~a~v~~~~~~d~~~~--~-~~~---~~~~~~~~~~~~~~~~~sp~~~~-~~i~ 830 (953)
++.+.|+|.|+||+.|.+++.+++ +++ |+++|++..... . .+. .......+-....+.+...+... ..-.
T Consensus 58 ~~~~~liGSSlGG~~A~~La~~~~--~~a-vLiNPav~p~~~l~~~iG~~~~~~~~e~~~~~~~~~~~l~~l~~~~~~~~ 134 (187)
T PF05728_consen 58 PENVVLIGSSLGGFYATYLAERYG--LPA-VLINPAVRPYELLQDYIGEQTNPYTGESYELTEEHIEELKALEVPYPTNP 134 (187)
T ss_pred CCCeEEEEEChHHHHHHHHHHHhC--CCE-EEEcCCCCHHHHHHHhhCccccCCCCccceechHhhhhcceEeccccCCC
Confidence 345999999999999999998884 565 778887652110 0 000 00000001011122222221111 1124
Q ss_pred CcEEEEEeCCCCCCCCchHHHHHHHHHHHhCCCcEEEEEeCCCCccCCCcccHHHHHHHHHHHH
Q 002209 831 KPILLVHGEEDNNSGTLTMQSDRFFNALKGHGALCRLVILPFESHGYAARESIMHVLWETDRWL 894 (953)
Q Consensus 831 ~P~Li~~G~~D~~v~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~H~~~~~~~~~~~~~~i~~fl 894 (953)
.++|+++++.|++++ +..+...|+. +..++.+|.+|.+.+ .+.....|.+|+
T Consensus 135 ~~~lvll~~~DEvLd--~~~a~~~~~~-------~~~~i~~ggdH~f~~---f~~~l~~i~~f~ 186 (187)
T PF05728_consen 135 ERYLVLLQTGDEVLD--YREAVAKYRG-------CAQIIEEGGDHSFQD---FEEYLPQIIAFL 186 (187)
T ss_pred ccEEEEEecCCcccC--HHHHHHHhcC-------ceEEEEeCCCCCCcc---HHHHHHHHHHhh
Confidence 589999999999998 7665554432 234466888999864 456678888886
No 211
>KOG0296 consensus Angio-associated migratory cell protein (contains WD40 repeats) [Function unknown]
Probab=98.78 E-value=8.8e-07 Score=90.40 Aligned_cols=266 Identities=12% Similarity=0.132 Sum_probs=154.0
Q ss_pred CCCCceecCCCCEEEEEecCCCCCccccccccceeceEEecCCCCCCcceeeeeceEEEEccCCCCCCceeeeecCCCCC
Q 002209 110 PLPALSFSPQRDKILFLKRRALPPLEELARPEEKLAGLRIDGKCNTRSRMSFYTGIGIHQLFPDGKLGQEIEIQGFPDGA 189 (953)
Q Consensus 110 ~~~~~~~SPDG~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~i~~~~~~g~~~~~~~l~~~~~~~ 189 (953)
.+....||.||.+||..-.. +.|.||.+.+ | .....+. ....
T Consensus 108 SVt~~~FshdgtlLATGdms---------------------------------G~v~v~~~st-g--~~~~~~~--~e~~ 149 (399)
T KOG0296|consen 108 SVTCCSFSHDGTLLATGDMS---------------------------------GKVLVFKVST-G--GEQWKLD--QEVE 149 (399)
T ss_pred ceEEEEEccCceEEEecCCC---------------------------------ccEEEEEccc-C--ceEEEee--cccC
Confidence 46678889999888875443 4678988854 2 2233332 2334
Q ss_pred cccceEeccCCCeEEEEEeeccccCCCCcceEEEEECCCCceeecccCCCccccccccceEEecCCeEEEEEecCCCCCC
Q 002209 190 KLNFVTWSQDGKHLAFSIRIDAEDSSSSKLRVWVADVDTGKARPLFQSPDIYLNAIFDNFVWVNNSTLLVCTIPLLRGDP 269 (953)
Q Consensus 190 ~~~~~~wSPDG~~laf~~~~~~~~~~~~~~~l~~~d~~~g~~~~lt~~~~~~~~~~~~~~~wspDg~~l~~~~~~~~~~~ 269 (953)
.+....|.|-+..|++ +.....+|.+.+..+..-++....... ...-.+.|||++|+....+.....
T Consensus 150 dieWl~WHp~a~illA---------G~~DGsvWmw~ip~~~~~kv~~Gh~~~----ct~G~f~pdGKr~~tgy~dgti~~ 216 (399)
T KOG0296|consen 150 DIEWLKWHPRAHILLA---------GSTDGSVWMWQIPSQALCKVMSGHNSP----CTCGEFIPDGKRILTGYDDGTIIV 216 (399)
T ss_pred ceEEEEecccccEEEe---------ecCCCcEEEEECCCcceeeEecCCCCC----cccccccCCCceEEEEecCceEEE
Confidence 7889999998877777 445779999999885555565554432 556779999999997744322110
Q ss_pred --CCCCCCCCCCceeecCCCccccchhhhhhcC-CcchhhhhhhhccceEEEEEc-CCceeEeCCC----------Cccc
Q 002209 270 --PKKPLVPLGPKMQSNEKRDIIQVRTFQDLLK-DEYDEDLFDYYATTQLVLVSL-DGTVKEIGPP----------AVYT 335 (953)
Q Consensus 270 --~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~d~~~~~~~~~~~l~~~~~-~g~~~~l~~~----------~~~~ 335 (953)
++.. .|. -.+.+.++.+.- .+. +......+.-...+..+.++. +|++....++ ....
T Consensus 217 Wn~ktg-~p~-~~~~~~e~~~~~-------~~~~~~~~~~~~~g~~e~~~~~~~~~sgKVv~~~n~~~~~l~~~~e~~~e 287 (399)
T KOG0296|consen 217 WNPKTG-QPL-HKITQAEGLELP-------CISLNLAGSTLTKGNSEGVACGVNNGSGKVVNCNNGTVPELKPSQEELDE 287 (399)
T ss_pred EecCCC-cee-EEecccccCcCC-------ccccccccceeEeccCCccEEEEccccceEEEecCCCCccccccchhhhh
Confidence 1000 000 000001100000 000 000001111113345556666 6766655542 1122
Q ss_pred ccc---cCCCCcEEEEEEecCCccccccCCCCCcceEEEeccCceEEEeccCCCcccCCccccccccCccceeeccCCCC
Q 002209 336 SLD---PSPDEKYILISSIHRPYSFIVPCGRFPRQVGVWTTDGIFVRELCDLPLAEDIPIAFNSVRKGMRSINWRSDKPS 412 (953)
Q Consensus 336 ~~~---~SpDG~~l~~~~~~~~~~~~~~~~~~~~~i~~~d~~g~~~~~l~~~~~~~~~p~~~~~~~~~~~~~~wspDg~~ 412 (953)
++. ||.+=...|. +...+.|-+||+.....|.+..++ .++..+.|-+ ...
T Consensus 288 sve~~~~ss~lpL~A~-------------G~vdG~i~iyD~a~~~~R~~c~he-------------~~V~~l~w~~-t~~ 340 (399)
T KOG0296|consen 288 SVESIPSSSKLPLAAC-------------GSVDGTIAIYDLAASTLRHICEHE-------------DGVTKLKWLN-TDY 340 (399)
T ss_pred hhhhcccccccchhhc-------------ccccceEEEEecccchhheeccCC-------------CceEEEEEcC-cch
Confidence 233 3333222222 334569999999988888877654 3456788877 333
Q ss_pred ceEEEEeccCCCcccccccCCeEEEEecCCCCCCCceEEeecccccCCeeeccCCceEEEEEecc
Q 002209 413 TLYWAETQDGGDAKVEVTPRDIIYTQQAEPVQGEGPEILHKLDLRYGGISWCDDSLALVYESWYK 477 (953)
Q Consensus 413 i~~~~~~~~~~~~~~~~~~~~~l~~~d~~~~~g~~~~~l~~~~~~~~~~~~SpDg~~l~~~~~~~ 477 (953)
|+-. ...+.|+.||+ .+|.....++.+...+..++.+||++.++..+.++
T Consensus 341 l~t~-------------c~~g~v~~wDa--RtG~l~~~y~GH~~~Il~f~ls~~~~~vvT~s~D~ 390 (399)
T KOG0296|consen 341 LLTA-------------CANGKVRQWDA--RTGQLKFTYTGHQMGILDFALSPQKRLVVTVSDDN 390 (399)
T ss_pred heee-------------ccCceEEeeec--cccceEEEEecCchheeEEEEcCCCcEEEEecCCC
Confidence 3332 44668999996 45544555677777888899999999988876554
No 212
>COG5354 Uncharacterized protein, contains Trp-Asp (WD) repeat [General function prediction only]
Probab=98.77 E-value=3.6e-06 Score=89.75 Aligned_cols=336 Identities=13% Similarity=0.081 Sum_probs=179.7
Q ss_pred CCCCceecCCCCEEEEEecCCCCCccccccccceeceEEecCCCCCCcceeeeeceEEEEccCCCCCCceeeeecCCCCC
Q 002209 110 PLPALSFSPQRDKILFLKRRALPPLEELARPEEKLAGLRIDGKCNTRSRMSFYTGIGIHQLFPDGKLGQEIEIQGFPDGA 189 (953)
Q Consensus 110 ~~~~~~~SPDG~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~i~~~~~~g~~~~~~~l~~~~~~~ 189 (953)
.+...++||.|++|++.-.. +|.+|.-.. .. .++.+.. .
T Consensus 34 p~~~~~~SP~G~~l~~~~~~----------------------------------~V~~~~g~~----~~--~l~~~~~-~ 72 (561)
T COG5354 34 PVAYVSESPLGTYLFSEHAA----------------------------------GVECWGGPS----KA--KLVRFRH-P 72 (561)
T ss_pred chhheeecCcchheehhhcc----------------------------------ceEEccccc----hh--heeeeec-C
Confidence 46678999999998876543 455554321 11 2222332 3
Q ss_pred cccceEeccCCCeEEEEEeecc------ccCCCCcceEEEEECCCCceeecccCCCccccccccceEEecCCeEEEEEec
Q 002209 190 KLNFVTWSQDGKHLAFSIRIDA------EDSSSSKLRVWVADVDTGKARPLFQSPDIYLNAIFDNFVWVNNSTLLVCTIP 263 (953)
Q Consensus 190 ~~~~~~wSPDG~~laf~~~~~~------~~~~~~~~~l~~~d~~~g~~~~lt~~~~~~~~~~~~~~~wspDg~~l~~~~~ 263 (953)
.+....|||.|++|..-.+..- ........+++++|..+|....-........ -.-..+.||-|.++++..
T Consensus 73 ~V~~~~fSP~~kYL~tw~~~pi~~pe~e~sp~~~~n~~~vwd~~sg~iv~sf~~~~q~~-~~Wp~~k~s~~D~y~ARv-- 149 (561)
T COG5354 73 DVKYLDFSPNEKYLVTWSREPIIEPEIEISPFTSKNNVFVWDIASGMIVFSFNGISQPY-LGWPVLKFSIDDKYVARV-- 149 (561)
T ss_pred CceecccCcccceeeeeccCCccChhhccCCccccCceeEEeccCceeEeeccccCCcc-cccceeeeeecchhhhhh--
Confidence 6888999999999987665441 1111223378999998887643222111100 001146677777666643
Q ss_pred CCCCCCCCCCCCCCCCceeecCCCccccchhhhhhcCCcchhhhhhhhccceEEEEEcCCceeEeCC----CCccccccc
Q 002209 264 LLRGDPPKKPLVPLGPKMQSNEKRDIIQVRTFQDLLKDEYDEDLFDYYATTQLVLVSLDGTVKEIGP----PAVYTSLDP 339 (953)
Q Consensus 264 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~l~~~~~~g~~~~l~~----~~~~~~~~~ 339 (953)
....|+++.+++......- ..++..+.|
T Consensus 150 ------------------------------------------------v~~sl~i~e~t~n~~~~p~~~lr~~gi~dFsi 181 (561)
T COG5354 150 ------------------------------------------------VGSSLYIHEITDNIEEHPFKNLRPVGILDFSI 181 (561)
T ss_pred ------------------------------------------------ccCeEEEEecCCccccCchhhccccceeeEEe
Confidence 2245667776332222111 256788999
Q ss_pred CCCC--cEEEEEEecCCccccccCCCCCcceEEEecc-CceEEEeccCCCcccCCccccccccCccceeeccCCCCceEE
Q 002209 340 SPDE--KYILISSIHRPYSFIVPCGRFPRQVGVWTTD-GIFVRELCDLPLAEDIPIAFNSVRKGMRSINWRSDKPSTLYW 416 (953)
Q Consensus 340 SpDG--~~l~~~~~~~~~~~~~~~~~~~~~i~~~d~~-g~~~~~l~~~~~~~~~p~~~~~~~~~~~~~~wspDg~~i~~~ 416 (953)
||.| ..|+|-.-.. .+.+..+.+|.+- ++.++..+-... ....+.|.+.|+.|++.
T Consensus 182 sP~~n~~~la~~tPEk--------~~kpa~~~i~sIp~~s~l~tk~lfk~-------------~~~qLkW~~~g~~ll~l 240 (561)
T COG5354 182 SPEGNHDELAYWTPEK--------LNKPAMVRILSIPKNSVLVTKNLFKV-------------SGVQLKWQVLGKYLLVL 240 (561)
T ss_pred cCCCCCceEEEEcccc--------CCCCcEEEEEEccCCCeeeeeeeEee-------------cccEEEEecCCceEEEE
Confidence 9964 3455554221 1224466677665 222222221111 11368899999999988
Q ss_pred EEeccCCCcccccccCCeEEEEecCCCCCCCceEEeecccccCCeeeccCCceEEEEEecccCceEEEEEcCCCCCCCcE
Q 002209 417 AETQDGGDAKVEVTPRDIIYTQQAEPVQGEGPEILHKLDLRYGGISWCDDSLALVYESWYKTRRTRTWVISPGSKDVAPR 496 (953)
Q Consensus 417 ~~~~~~~~~~~~~~~~~~l~~~d~~~~~g~~~~~l~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~l~~~d~~~~~~~~~ 496 (953)
+.+.-..+..+ -+...||++++ ++...+........+-.+.|+|++++++..+..... .+-..++.++ .+
T Consensus 241 ~~t~~ksnKsy--fgesnLyl~~~---~e~~i~V~~~~~~pVhdf~W~p~S~~F~vi~g~~pa--~~s~~~lr~N---l~ 310 (561)
T COG5354 241 VMTHTKSNKSY--FGESNLYLLRI---TERSIPVEKDLKDPVHDFTWEPLSSRFAVISGYMPA--SVSVFDLRGN---LR 310 (561)
T ss_pred EEEeeecccce--eccceEEEEee---cccccceeccccccceeeeecccCCceeEEeccccc--ceeecccccc---eE
Confidence 55443111100 12367899986 433322222335566779999999998776633322 3445555542 11
Q ss_pred EeecCCCccccCCCCCCCeEeccCCCEEEEEeeeccCCCcEEEEecCCCCCCCCCCeEEEEECCCCceEEEeccCcccce
Q 002209 497 ILFDRSSEDVYSDPGSPMMRRTSTGTYVIAKIKKENDEGTYILLNGNGATPEGNIPFLDLFDINTGSKERIWESDKEKYY 576 (953)
Q Consensus 497 ~~~~~~~~~~~~~~~~p~~~~SpDG~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~d~~~~~~~~l~~~~~~~~~ 576 (953)
... +.+. .+- +.|||.++++++..-+. . ...+-.||..+.. ..+..-.+.
T Consensus 311 ~~~--Pe~~-----rNT-~~fsp~~r~il~agF~n-l-----------------~gni~i~~~~~rf-~~~~~~~~~--- 360 (561)
T COG5354 311 FYF--PEQK-----RNT-IFFSPHERYILFAGFDN-L-----------------QGNIEIFDPAGRF-KVAGAFNGL--- 360 (561)
T ss_pred Eec--CCcc-----ccc-ccccCcccEEEEecCCc-c-----------------ccceEEeccCCce-EEEEEeecC---
Confidence 111 1110 011 56999999998865321 0 1125666665432 222221111
Q ss_pred eeeEeeccCCccccccccCCEEEEEEecCC
Q 002209 577 ETTVALMSDQTEGDLYLNQLKILTSKESKT 606 (953)
Q Consensus 577 ~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~ 606 (953)
+-.-+.||||++.+.....+..
T Consensus 361 --------n~s~~~wspd~qF~~~~~ts~k 382 (561)
T COG5354 361 --------NTSYCDWSPDGQFYDTDTTSEK 382 (561)
T ss_pred --------CceEeeccCCceEEEecCCCcc
Confidence 0011468999987776555544
No 213
>PTZ00420 coronin; Provisional
Probab=98.75 E-value=4.8e-06 Score=95.58 Aligned_cols=223 Identities=9% Similarity=0.053 Sum_probs=117.1
Q ss_pred ceEEEEccCCCCCCceeeeecCCCCCcccceEeccC-CCeEEEEEeeccccCCCCcceEEEEECCCCce--e-------e
Q 002209 164 GIGIHQLFPDGKLGQEIEIQGFPDGAKLNFVTWSQD-GKHLAFSIRIDAEDSSSSKLRVWVADVDTGKA--R-------P 233 (953)
Q Consensus 164 ~i~i~~~~~~g~~~~~~~l~~~~~~~~~~~~~wSPD-G~~laf~~~~~~~~~~~~~~~l~~~d~~~g~~--~-------~ 233 (953)
.|.+|+... ......+.++. ..+....|+|+ ++.|+..+ ....|.+|++..+.. . .
T Consensus 55 vI~L~~~~r---~~~v~~L~gH~--~~V~~lafsP~~~~lLASgS---------~DgtIrIWDi~t~~~~~~~i~~p~~~ 120 (568)
T PTZ00420 55 AIRLENQMR---KPPVIKLKGHT--SSILDLQFNPCFSEILASGS---------EDLTIRVWEIPHNDESVKEIKDPQCI 120 (568)
T ss_pred EEEeeecCC---CceEEEEcCCC--CCEEEEEEcCCCCCEEEEEe---------CCCeEEEEECCCCCccccccccceEE
Confidence 567777521 11222333332 46899999997 66666543 245667777654321 1 1
Q ss_pred cccCCCccccccccceEEecCCeEEEEEecCCCCCCCCCCCCCCCCceeecCCCccccchhhhhhcCCcchhhhhhhhcc
Q 002209 234 LFQSPDIYLNAIFDNFVWVNNSTLLVCTIPLLRGDPPKKPLVPLGPKMQSNEKRDIIQVRTFQDLLKDEYDEDLFDYYAT 313 (953)
Q Consensus 234 lt~~~~~~~~~~~~~~~wspDg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~ 313 (953)
+..+. ..+..++|+|++..++++.. ..
T Consensus 121 L~gH~-----~~V~sVaf~P~g~~iLaSgS------------------------------------------------~D 147 (568)
T PTZ00420 121 LKGHK-----KKISIIDWNPMNYYIMCSSG------------------------------------------------FD 147 (568)
T ss_pred eecCC-----CcEEEEEECCCCCeEEEEEe------------------------------------------------CC
Confidence 21111 22778999999987654410 12
Q ss_pred ceEEEEEc-CCce-eEeCCCCcccccccCCCCcEEEEEEecCCccccccCCCCCcceEEEeccCceE-EEeccCCCcccC
Q 002209 314 TQLVLVSL-DGTV-KEIGPPAVYTSLDPSPDEKYILISSIHRPYSFIVPCGRFPRQVGVWTTDGIFV-RELCDLPLAEDI 390 (953)
Q Consensus 314 ~~l~~~~~-~g~~-~~l~~~~~~~~~~~SpDG~~l~~~~~~~~~~~~~~~~~~~~~i~~~d~~g~~~-~~l~~~~~~~~~ 390 (953)
..|.++|+ +++. ..+.....+.+++|+|||+.|+.+..+. .|.+||+.++.. ..+..+.....
T Consensus 148 gtIrIWDl~tg~~~~~i~~~~~V~SlswspdG~lLat~s~D~-------------~IrIwD~Rsg~~i~tl~gH~g~~~- 213 (568)
T PTZ00420 148 SFVNIWDIENEKRAFQINMPKKLSSLKWNIKGNLLSGTCVGK-------------HMHIIDPRKQEIASSFHIHDGGKN- 213 (568)
T ss_pred CeEEEEECCCCcEEEEEecCCcEEEEEECCCCCEEEEEecCC-------------EEEEEECCCCcEEEEEecccCCce-
Confidence 35667787 6643 3333336688999999999998776333 899999986543 33333221100
Q ss_pred CccccccccCccceeeccCCCCceEEEEeccCCCcccccccCCeEEEEecCCCCCCCceEEeecccccCC--eeeccC-C
Q 002209 391 PIAFNSVRKGMRSINWRSDKPSTLYWAETQDGGDAKVEVTPRDIIYTQQAEPVQGEGPEILHKLDLRYGG--ISWCDD-S 467 (953)
Q Consensus 391 p~~~~~~~~~~~~~~wspDg~~i~~~~~~~~~~~~~~~~~~~~~l~~~d~~~~~g~~~~~l~~~~~~~~~--~~~SpD-g 467 (953)
. .......|++|++.|+-. ..++ .....+.+||+ .+.+.+......+..... +.|.++ |
T Consensus 214 -s------~~v~~~~fs~d~~~IlTt--G~d~-------~~~R~VkLWDl--r~~~~pl~~~~ld~~~~~L~p~~D~~tg 275 (568)
T PTZ00420 214 -T------KNIWIDGLGGDDNYILST--GFSK-------NNMREMKLWDL--KNTTSALVTMSIDNASAPLIPHYDESTG 275 (568)
T ss_pred -e------EEEEeeeEcCCCCEEEEE--EcCC-------CCccEEEEEEC--CCCCCceEEEEecCCccceEEeeeCCCC
Confidence 0 000112356888766554 1100 11236899996 222333333233322222 455555 5
Q ss_pred ceEEEEEecccCceEEEEEc
Q 002209 468 LALVYESWYKTRRTRTWVIS 487 (953)
Q Consensus 468 ~~l~~~~~~~~~~~~l~~~d 487 (953)
..++.+. .+ ...++|-+.
T Consensus 276 ~l~lsGk-GD-~tIr~~e~~ 293 (568)
T PTZ00420 276 LIYLIGK-GD-GNCRYYQHS 293 (568)
T ss_pred CEEEEEE-CC-CeEEEEEcc
Confidence 5444443 33 223555553
No 214
>cd00312 Esterase_lipase Esterases and lipases (includes fungal lipases, cholinesterases, etc.) These enzymes act on carboxylic esters (EC: 3.1.1.-). The catalytic apparatus involves three residues (catalytic triad): a serine, a glutamate or aspartate and a histidine.These catalytic residues are responsible for the nucleophilic attack on the carbonyl carbon atom of the ester bond. In contrast with other alpha/beta hydrolase fold family members, p-nitrobenzyl esterase and acetylcholine esterase have a Glu instead of Asp at the active site carboxylate.
Probab=98.74 E-value=3.1e-08 Score=115.58 Aligned_cols=129 Identities=18% Similarity=0.160 Sum_probs=90.1
Q ss_pred EEEEEEEcCCCCCCCCCCCccEEEEeCCCCCcCcCCCCcccCCCCCCCCccchHHHHHHHc-C-cEEEEcCCC-CCCCCC
Q 002209 651 QLSATLYLPPGYDPSKDGPLPCLFWSYPGEFKSKDAAGQVRGSPNEFPRIGSTSVLLWLAR-G-FAILGGPTT-PIIGEG 727 (953)
Q Consensus 651 ~~~~~l~~P~~~~~~~~~~~P~vv~~hGg~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~-G-~~V~~~~~~-~~~G~G 727 (953)
-++..+|.|...... .++||||++|||.+..+. ...+ ....+++. + ++|+.++|+ +..|+.
T Consensus 78 cl~l~i~~p~~~~~~--~~~pv~v~ihGG~~~~g~--------~~~~------~~~~~~~~~~~~~vv~~~yRlg~~g~~ 141 (493)
T cd00312 78 CLYLNVYTPKNTKPG--NSLPVMVWIHGGGFMFGS--------GSLY------PGDGLAREGDNVIVVSINYRLGVLGFL 141 (493)
T ss_pred CCeEEEEeCCCCCCC--CCCCEEEEEcCCccccCC--------CCCC------ChHHHHhcCCCEEEEEecccccccccc
Confidence 366788889754322 348999999998654332 1111 12344544 3 899998887 666765
Q ss_pred ChhhhhhhHHHHHHHHHHHHHHHHHc---CCCCCCcEEEEEeChHHHHHHHHHHhC--CCcccEEEEcccCCC
Q 002209 728 DEEANDRFVEQLVACAEAAVEEVVRR---GVAHPSKIAVGGHSYGAFMTANLLAHA--PHLFCCGIARSGAYN 795 (953)
Q Consensus 728 ~~~~~~~~~~~~~~D~~~~~~~l~~~---~~~d~~~i~l~G~S~GG~~a~~~a~~~--p~~~~a~v~~~~~~d 795 (953)
........+...+.|+..+++|+.++ ...|+++|.|+|+|+||.++..++... +.+|+++|+.+|...
T Consensus 142 ~~~~~~~~~n~g~~D~~~al~wv~~~i~~fggd~~~v~~~G~SaG~~~~~~~~~~~~~~~lf~~~i~~sg~~~ 214 (493)
T cd00312 142 STGDIELPGNYGLKDQRLALKWVQDNIAAFGGDPDSVTIFGESAGGASVSLLLLSPDSKGLFHRAISQSGSAL 214 (493)
T ss_pred cCCCCCCCcchhHHHHHHHHHHHHHHHHHhCCCcceEEEEeecHHHHHhhhHhhCcchhHHHHHHhhhcCCcc
Confidence 43222222345578999999999875 247999999999999999999888763 357999999988654
No 215
>PF07224 Chlorophyllase: Chlorophyllase; InterPro: IPR010821 This family consists of several chlorophyllase proteins (3.1.1.14 from EC). Chlorophyllase (Chlase) is the first enzyme involved in chlorophyll degradation and catalyses the hydrolysis of the ester bond to yield chlorophyllide and phytol [, , ].; GO: 0047746 chlorophyllase activity, 0015996 chlorophyll catabolic process
Probab=98.73 E-value=1.8e-07 Score=92.01 Aligned_cols=207 Identities=16% Similarity=0.126 Sum_probs=127.5
Q ss_pred EEEEEEEcCCCCCCCCCCCccEEEEeCCCCCcCcCCCCcccCCCCCCCCccchHHHHHHHcCcEEEEcCCCCCCCCCChh
Q 002209 651 QLSATLYLPPGYDPSKDGPLPCLFWSYPGEFKSKDAAGQVRGSPNEFPRIGSTSVLLWLARGFAILGGPTTPIIGEGDEE 730 (953)
Q Consensus 651 ~~~~~l~~P~~~~~~~~~~~P~vv~~hGg~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~G~~V~~~~~~~~~G~G~~~ 730 (953)
..+..|+.|.. .+.+|+|+++||.. -+..++....+.+++.||+|++++.+...+
T Consensus 32 PkpLlI~tP~~-----~G~yPVilF~HG~~---------------l~ns~Ys~lL~HIASHGfIVVAPQl~~~~~----- 86 (307)
T PF07224_consen 32 PKPLLIVTPSE-----AGTYPVILFLHGFN---------------LYNSFYSQLLAHIASHGFIVVAPQLYTLFP----- 86 (307)
T ss_pred CCCeEEecCCc-----CCCccEEEEeechh---------------hhhHHHHHHHHHHhhcCeEEEechhhcccC-----
Confidence 34567777764 45699999999942 122334455667889999999988754332
Q ss_pred hhhhhHHHHHHHHHHHHHHHHHc--------CCCCCCcEEEEEeChHHHHHHHHHHhCC-C-cccEEEEcccCCCCCCCC
Q 002209 731 ANDRFVEQLVACAEAAVEEVVRR--------GVAHPSKIAVGGHSYGAFMTANLLAHAP-H-LFCCGIARSGAYNRTLTP 800 (953)
Q Consensus 731 ~~~~~~~~~~~D~~~~~~~l~~~--------~~~d~~~i~l~G~S~GG~~a~~~a~~~p-~-~~~a~v~~~~~~d~~~~~ 800 (953)
.....++++..++++||.+. -..+.++++++|||.||..|..+|..+. + .|.|.|.+.|+.......
T Consensus 87 ---p~~~~Ei~~aa~V~~WL~~gL~~~Lp~~V~~nl~klal~GHSrGGktAFAlALg~a~~lkfsaLIGiDPV~G~~k~~ 163 (307)
T PF07224_consen 87 ---PDGQDEIKSAASVINWLPEGLQHVLPENVEANLSKLALSGHSRGGKTAFALALGYATSLKFSALIGIDPVAGTSKGK 163 (307)
T ss_pred ---CCchHHHHHHHHHHHHHHhhhhhhCCCCcccccceEEEeecCCccHHHHHHHhcccccCchhheecccccCCCCCCC
Confidence 12367788889999998753 1256779999999999999999998662 2 488888888764321100
Q ss_pred cCcccccchhhhhHHHHHhcCcccccCCCCCcEEEEEeCCC-----CCCCCchH--HHHHHHHHHHhCCCcEEEEEeCCC
Q 002209 801 FGFQNEDRTLWEATSTYVEMSPFMSANKLKKPILLVHGEED-----NNSGTLTM--QSDRFFNALKGHGALCRLVILPFE 873 (953)
Q Consensus 801 ~~~~~~~~~~~~~~~~~~~~sp~~~~~~i~~P~Li~~G~~D-----~~v~~~~~--~~~~~~~~l~~~g~~~~~~~~~~~ 873 (953)
++ .+. ...+.|.. =++..|++||-...- -..||.+. +-++||+..+.. +-..+-.+-
T Consensus 164 -------~t---~P~-iLty~p~S--F~l~iPv~VIGtGLg~~~~~~~~~CaP~gvnH~eFf~eCk~p---~~hfV~~dY 227 (307)
T PF07224_consen 164 -------QT---PPP-ILTYVPQS--FDLDIPVLVIGTGLGPKRNPLFPPCAPDGVNHEEFFNECKPP---CAHFVAKDY 227 (307)
T ss_pred -------CC---CCC-eeecCCcc--cccCCceEEEecCcCccccCCCCCCCCCCcCHHHHHHhhccc---ceeeeeccc
Confidence 00 000 00111111 135689999864433 11222243 347899998854 444455667
Q ss_pred CccCCCc------------------cc-----HHHHHHHHHHHHHHhccCC
Q 002209 874 SHGYAAR------------------ES-----IMHVLWETDRWLQKYCVSN 901 (953)
Q Consensus 874 ~H~~~~~------------------~~-----~~~~~~~i~~fl~~~l~~~ 901 (953)
||.-.-. +. +.-+-..+++||+.||...
T Consensus 228 GHmDmLDD~~~g~~G~~~~clCkng~~pr~pMRr~vgGivVAFL~a~l~~~ 278 (307)
T PF07224_consen 228 GHMDMLDDDTPGIIGKLSYCLCKNGKSPRDPMRRFVGGIVVAFLKAYLEGD 278 (307)
T ss_pred ccccccccCccccccceeeEeecCCCCcchHHHHhhhhhHHHHHHHHHcCC
Confidence 8853200 11 1223345889999998654
No 216
>KOG0643 consensus Translation initiation factor 3, subunit i (eIF-3i)/TGF-beta receptor-interacting protein (TRIP-1) [Translation, ribosomal structure and biogenesis; Signal transduction mechanisms]
Probab=98.73 E-value=3.4e-06 Score=82.66 Aligned_cols=281 Identities=12% Similarity=0.079 Sum_probs=156.7
Q ss_pred CCCCceecCCCCEEEEEecCCCCCcccc---------ccccceeceEEecCCCCCCcceeeeeceEEEEccCCCCCCcee
Q 002209 110 PLPALSFSPQRDKILFLKRRALPPLEEL---------ARPEEKLAGLRIDGKCNTRSRMSFYTGIGIHQLFPDGKLGQEI 180 (953)
Q Consensus 110 ~~~~~~~SPDG~~la~~~~~~~~~~~~~---------~~~~~~~~~~~~~~~~~~~~~~~~~~~i~i~~~~~~g~~~~~~ 180 (953)
++..+.+.-||..|.....++.+.++.- ..-..-++.+.++.+.......+.+..+.+||+++ ++
T Consensus 12 plTqiKyN~eGDLlFscaKD~~~~vw~s~nGerlGty~GHtGavW~~Did~~s~~liTGSAD~t~kLWDv~t----Gk-- 85 (327)
T KOG0643|consen 12 PLTQIKYNREGDLLFSCAKDSTPTVWYSLNGERLGTYDGHTGAVWCCDIDWDSKHLITGSADQTAKLWDVET----GK-- 85 (327)
T ss_pred ccceEEecCCCcEEEEecCCCCceEEEecCCceeeeecCCCceEEEEEecCCcceeeeccccceeEEEEcCC----Cc--
Confidence 4556777888876666555544444422 22223355667777766555556667889999965 33
Q ss_pred eeecCCCCCcccceEeccCCCeEEEEEeeccccCCCCcceEEEEECC-------CCce-eecccCCCccccccccceEEe
Q 002209 181 EIQGFPDGAKLNFVTWSQDGKHLAFSIRIDAEDSSSSKLRVWVADVD-------TGKA-RPLFQSPDIYLNAIFDNFVWV 252 (953)
Q Consensus 181 ~l~~~~~~~~~~~~~wSPDG~~laf~~~~~~~~~~~~~~~l~~~d~~-------~g~~-~~lt~~~~~~~~~~~~~~~ws 252 (953)
++..+..+..+....||++|..++++.+.. -.....|.+.++. +.++ .++.. ++.. +....|+
T Consensus 86 ~la~~k~~~~Vk~~~F~~~gn~~l~~tD~~----mg~~~~v~~fdi~~~~~~~~s~ep~~kI~t-~~sk----it~a~Wg 156 (327)
T KOG0643|consen 86 QLATWKTNSPVKRVDFSFGGNLILASTDKQ----MGYTCFVSVFDIRDDSSDIDSEEPYLKIPT-PDSK----ITSALWG 156 (327)
T ss_pred EEEEeecCCeeEEEeeccCCcEEEEEehhh----cCcceEEEEEEccCChhhhcccCceEEecC-Cccc----eeeeeec
Confidence 343355556788899999999999987532 2234455566655 3332 23322 2222 5678899
Q ss_pred cCCeEEEEEecCCCCCCCCCCCCCCCCceeecCCCccccchhhhhhcCCcchhhhhhhhccceEEEEEc-CCcee-EeC-
Q 002209 253 NNSTLLVCTIPLLRGDPPKKPLVPLGPKMQSNEKRDIIQVRTFQDLLKDEYDEDLFDYYATTQLVLVSL-DGTVK-EIG- 329 (953)
Q Consensus 253 pDg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~l~~~~~-~g~~~-~l~- 329 (953)
|-|+.|++. . ..+.|-++|+ +|+.. .-.
T Consensus 157 ~l~~~ii~G----------------------------------------h---------e~G~is~~da~~g~~~v~s~~ 187 (327)
T KOG0643|consen 157 PLGETIIAG----------------------------------------H---------EDGSISIYDARTGKELVDSDE 187 (327)
T ss_pred ccCCEEEEe----------------------------------------c---------CCCcEEEEEcccCceeeechh
Confidence 999998866 0 2356778888 77432 221
Q ss_pred CC-CcccccccCCCCcEEEEEEecCCccccccCCCCCcceEEEeccCceEE-E-eccCCCcccCCccccccccCccceee
Q 002209 330 PP-AVYTSLDPSPDEKYILISSIHRPYSFIVPCGRFPRQVGVWTTDGIFVR-E-LCDLPLAEDIPIAFNSVRKGMRSINW 406 (953)
Q Consensus 330 ~~-~~~~~~~~SpDG~~l~~~~~~~~~~~~~~~~~~~~~i~~~d~~g~~~~-~-l~~~~~~~~~p~~~~~~~~~~~~~~w 406 (953)
.. ..+.++.+|||..+.+..+.+. +-.+||..+-+.. . .+..|. ...++
T Consensus 188 ~h~~~Ind~q~s~d~T~FiT~s~Dt-------------takl~D~~tl~v~Kty~te~Pv---------------N~aai 239 (327)
T KOG0643|consen 188 EHSSKINDLQFSRDRTYFITGSKDT-------------TAKLVDVRTLEVLKTYTTERPV---------------NTAAI 239 (327)
T ss_pred hhccccccccccCCcceEEecccCc-------------cceeeeccceeeEEEeeecccc---------------cceec
Confidence 12 6788999999999988777443 6667887753322 2 233332 23556
Q ss_pred ccCCCCceEE--EEeccCCCcccccccCCeEEEEecCCCCCCCceEEeecccccCCeeeccCCceEEEEEecccCceEEE
Q 002209 407 RSDKPSTLYW--AETQDGGDAKVEVTPRDIIYTQQAEPVQGEGPEILHKLDLRYGGISWCDDSLALVYESWYKTRRTRTW 484 (953)
Q Consensus 407 spDg~~i~~~--~~~~~~~~~~~~~~~~~~l~~~d~~~~~g~~~~~l~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~l~ 484 (953)
+|--..++.. -++.+-.......+.. ....+++ .--.+...+..+-+.+++++|+|||+. |++....+..+|.
T Consensus 240 sP~~d~VilgGGqeA~dVTTT~~r~GKF-EArFyh~--i~eEEigrvkGHFGPINsvAfhPdGks--YsSGGEDG~VR~h 314 (327)
T KOG0643|consen 240 SPLLDHVILGGGQEAMDVTTTSTRAGKF-EARFYHL--IFEEEIGRVKGHFGPINSVAFHPDGKS--YSSGGEDGYVRLH 314 (327)
T ss_pred ccccceEEecCCceeeeeeeecccccch-hhhHHHH--HHHHHhccccccccCcceeEECCCCcc--cccCCCCceEEEE
Confidence 7755544443 0000000000000000 0000010 000122345566777889999999995 3333333444666
Q ss_pred EEc
Q 002209 485 VIS 487 (953)
Q Consensus 485 ~~d 487 (953)
.++
T Consensus 315 ~Fd 317 (327)
T KOG0643|consen 315 HFD 317 (327)
T ss_pred Eec
Confidence 555
No 217
>PTZ00420 coronin; Provisional
Probab=98.73 E-value=6.1e-06 Score=94.76 Aligned_cols=118 Identities=14% Similarity=0.105 Sum_probs=71.7
Q ss_pred CcccccccCCCCcEEEEEEecCCccccccCCCCCcceEEEeccCceEE-EeccCCCcccCCccccccccCccceeeccCC
Q 002209 332 AVYTSLDPSPDEKYILISSIHRPYSFIVPCGRFPRQVGVWTTDGIFVR-ELCDLPLAEDIPIAFNSVRKGMRSINWRSDK 410 (953)
Q Consensus 332 ~~~~~~~~SpDG~~l~~~~~~~~~~~~~~~~~~~~~i~~~d~~g~~~~-~l~~~~~~~~~p~~~~~~~~~~~~~~wspDg 410 (953)
..+..++|+|++..++.+... .+.|.+||+.++... .+. .+ ..+.+++|+|||
T Consensus 126 ~~V~sVaf~P~g~~iLaSgS~------------DgtIrIWDl~tg~~~~~i~-~~-------------~~V~SlswspdG 179 (568)
T PTZ00420 126 KKISIIDWNPMNYYIMCSSGF------------DSFVNIWDIENEKRAFQIN-MP-------------KKLSSLKWNIKG 179 (568)
T ss_pred CcEEEEEECCCCCeEEEEEeC------------CCeEEEEECCCCcEEEEEe-cC-------------CcEEEEEECCCC
Confidence 668889999999987655422 248999999865432 222 11 234689999999
Q ss_pred CCceEEEEeccCCCcccccccCCeEEEEecCCCCCCCceEEeecccccCC-----eeeccCCceEEEEEecccCceEEEE
Q 002209 411 PSTLYWAETQDGGDAKVEVTPRDIIYTQQAEPVQGEGPEILHKLDLRYGG-----ISWCDDSLALVYESWYKTRRTRTWV 485 (953)
Q Consensus 411 ~~i~~~~~~~~~~~~~~~~~~~~~l~~~d~~~~~g~~~~~l~~~~~~~~~-----~~~SpDg~~l~~~~~~~~~~~~l~~ 485 (953)
+.++.. .....+.+||+ .++.....+..+.+.... ..|++|+++|+..+..+.....+.+
T Consensus 180 ~lLat~-------------s~D~~IrIwD~--Rsg~~i~tl~gH~g~~~s~~v~~~~fs~d~~~IlTtG~d~~~~R~VkL 244 (568)
T PTZ00420 180 NLLSGT-------------CVGKHMHIIDP--RKQEIASSFHIHDGGKNTKNIWIDGLGGDDNYILSTGFSKNNMREMKL 244 (568)
T ss_pred CEEEEE-------------ecCCEEEEEEC--CCCcEEEEEecccCCceeEEEEeeeEcCCCCEEEEEEcCCCCccEEEE
Confidence 966544 33457899996 333223334444333221 2356899998887655432224555
Q ss_pred EcCCC
Q 002209 486 ISPGS 490 (953)
Q Consensus 486 ~d~~~ 490 (953)
+|+..
T Consensus 245 WDlr~ 249 (568)
T PTZ00420 245 WDLKN 249 (568)
T ss_pred EECCC
Confidence 55553
No 218
>KOG0645 consensus WD40 repeat protein [General function prediction only]
Probab=98.73 E-value=2.1e-06 Score=84.24 Aligned_cols=104 Identities=18% Similarity=0.316 Sum_probs=70.7
Q ss_pred cCCCCCCceecCCCCEEEEEecCCCCCccccccccceeceEEecCCCCCCcceeeeeceEEEEccCCCCCCceeeeecCC
Q 002209 107 DAPPLPALSFSPQRDKILFLKRRALPPLEELARPEEKLAGLRIDGKCNTRSRMSFYTGIGIHQLFPDGKLGQEIEIQGFP 186 (953)
Q Consensus 107 ~~~~~~~~~~SPDG~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~i~~~~~~g~~~~~~~l~~~~ 186 (953)
....++.++|||.|++||..+.+ . ..-||.- .++. -..+..+.
T Consensus 60 hkrsVRsvAwsp~g~~La~aSFD-------------------------~--------t~~Iw~k-~~~e---fecv~~lE 102 (312)
T KOG0645|consen 60 HKRSVRSVAWSPHGRYLASASFD-------------------------A--------TVVIWKK-EDGE---FECVATLE 102 (312)
T ss_pred chheeeeeeecCCCcEEEEeecc-------------------------c--------eEEEeec-CCCc---eeEEeeee
Confidence 34578899999999999999876 1 3345553 2332 22233333
Q ss_pred CC-CcccceEeccCCCeEEEEEeeccccCCCCcceEEEEECCCCcee----ecccCCCccccccccceEEecCCeEEEEE
Q 002209 187 DG-AKLNFVTWSQDGKHLAFSIRIDAEDSSSSKLRVWVADVDTGKAR----PLFQSPDIYLNAIFDNFVWVNNSTLLVCT 261 (953)
Q Consensus 187 ~~-~~~~~~~wSPDG~~laf~~~~~~~~~~~~~~~l~~~d~~~g~~~----~lt~~~~~~~~~~~~~~~wspDg~~l~~~ 261 (953)
.. ..+-.++||++|..||..++ ...+|++.++.+..- -|..+... +..+.|.|--..|+..
T Consensus 103 GHEnEVK~Vaws~sG~~LATCSR---------DKSVWiWe~deddEfec~aVL~~HtqD-----VK~V~WHPt~dlL~S~ 168 (312)
T KOG0645|consen 103 GHENEVKCVAWSASGNYLATCSR---------DKSVWIWEIDEDDEFECIAVLQEHTQD-----VKHVIWHPTEDLLFSC 168 (312)
T ss_pred ccccceeEEEEcCCCCEEEEeeC---------CCeEEEEEecCCCcEEEEeeecccccc-----ccEEEEcCCcceeEEe
Confidence 22 37888999999999999886 668899888755432 23333332 6789999987777755
No 219
>COG3571 Predicted hydrolase of the alpha/beta-hydrolase fold [General function prediction only]
Probab=98.71 E-value=6.9e-07 Score=80.53 Aligned_cols=148 Identities=14% Similarity=0.102 Sum_probs=87.9
Q ss_pred hHHHHHHHcCcEEEEcC--CCCCCCCCChhhhhhhHHHHHHHHHHHHHHHHHcCCCCCCcEEEEEeChHHHHHHHHHHhC
Q 002209 703 TSVLLWLARGFAILGGP--TTPIIGEGDEEANDRFVEQLVACAEAAVEEVVRRGVAHPSKIAVGGHSYGAFMTANLLAHA 780 (953)
Q Consensus 703 ~~~~~la~~G~~V~~~~--~~~~~G~G~~~~~~~~~~~~~~D~~~~~~~l~~~~~~d~~~i~l~G~S~GG~~a~~~a~~~ 780 (953)
..+..|+.+|+.|..++ |+-.+-.|....+.. ....-...+.++..|.+. .+..++++.|+||||-++..++..-
T Consensus 34 ~~a~~la~~G~~vaRfefpYma~Rrtg~rkPp~~-~~t~~~~~~~~~aql~~~--l~~gpLi~GGkSmGGR~aSmvade~ 110 (213)
T COG3571 34 AVAAALARRGWLVARFEFPYMAARRTGRRKPPPG-SGTLNPEYIVAIAQLRAG--LAEGPLIIGGKSMGGRVASMVADEL 110 (213)
T ss_pred HHHHHHHhCceeEEEeecchhhhccccCCCCcCc-cccCCHHHHHHHHHHHhc--ccCCceeeccccccchHHHHHHHhh
Confidence 34567889999999833 333333332211111 011112223444445444 3456899999999999998887643
Q ss_pred CCcccEEEEcccCCCCCCCCcCcccccchhhhhHHHHHhcCcccccCCCCCcEEEEEeCCCCCCCCchHHHHHHHHHHHh
Q 002209 781 PHLFCCGIARSGAYNRTLTPFGFQNEDRTLWEATSTYVEMSPFMSANKLKKPILLVHGEEDNNSGTLTMQSDRFFNALKG 860 (953)
Q Consensus 781 p~~~~a~v~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~sp~~~~~~i~~P~Li~~G~~D~~v~~~~~~~~~~~~~l~~ 860 (953)
-..+.+.++.+-.+. +.+-++. . -..++..+++|+||.||+.|..-. -++.. -..
T Consensus 111 ~A~i~~L~clgYPfh----ppGKPe~----------~----Rt~HL~gl~tPtli~qGtrD~fGt--r~~Va-----~y~ 165 (213)
T COG3571 111 QAPIDGLVCLGYPFH----PPGKPEQ----------L----RTEHLTGLKTPTLITQGTRDEFGT--RDEVA-----GYA 165 (213)
T ss_pred cCCcceEEEecCccC----CCCCccc----------c----hhhhccCCCCCeEEeecccccccC--HHHHH-----hhh
Confidence 233667666543221 1111111 1 124667789999999999998765 44431 112
Q ss_pred CCCcEEEEEeCCCCccCC
Q 002209 861 HGALCRLVILPFESHGYA 878 (953)
Q Consensus 861 ~g~~~~~~~~~~~~H~~~ 878 (953)
...+++++++.++.|.+.
T Consensus 166 ls~~iev~wl~~adHDLk 183 (213)
T COG3571 166 LSDPIEVVWLEDADHDLK 183 (213)
T ss_pred cCCceEEEEeccCccccc
Confidence 345789999999999874
No 220
>KOG0645 consensus WD40 repeat protein [General function prediction only]
Probab=98.70 E-value=3.7e-06 Score=82.64 Aligned_cols=150 Identities=13% Similarity=0.181 Sum_probs=102.9
Q ss_pred CcccccccCCCCcEEEEEEecCCccccccCCCCCcceEEEeccCceEEEeccCCCcccCCccccccccCccceeeccCCC
Q 002209 332 AVYTSLDPSPDEKYILISSIHRPYSFIVPCGRFPRQVGVWTTDGIFVRELCDLPLAEDIPIAFNSVRKGMRSINWRSDKP 411 (953)
Q Consensus 332 ~~~~~~~~SpDG~~l~~~~~~~~~~~~~~~~~~~~~i~~~d~~g~~~~~l~~~~~~~~~p~~~~~~~~~~~~~~wspDg~ 411 (953)
..+++++|||.|++|+..+.+ ..+.+|....++..-+....+. ...+..++||++|.
T Consensus 62 rsVRsvAwsp~g~~La~aSFD-------------~t~~Iw~k~~~efecv~~lEGH----------EnEVK~Vaws~sG~ 118 (312)
T KOG0645|consen 62 RSVRSVAWSPHGRYLASASFD-------------ATVVIWKKEDGEFECVATLEGH----------ENEVKCVAWSASGN 118 (312)
T ss_pred heeeeeeecCCCcEEEEeecc-------------ceEEEeecCCCceeEEeeeecc----------ccceeEEEEcCCCC
Confidence 568899999999999998844 4788887777777766665533 35567899999999
Q ss_pred CceEEEEeccCCCcccccccCCeEEEEecCCCCCCCce---EEeecccccCCeeeccCCceEEEEEecccCceEEEEEcC
Q 002209 412 STLYWAETQDGGDAKVEVTPRDIIYTQQAEPVQGEGPE---ILHKLDLRYGGISWCDDSLALVYESWYKTRRTRTWVISP 488 (953)
Q Consensus 412 ~i~~~~~~~~~~~~~~~~~~~~~l~~~d~~~~~g~~~~---~l~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~l~~~d~ 488 (953)
.||-- +....+|+|.+ ..+.+.. .|..+..++..+.|.|--..|+..+.+++. ++|.-+.
T Consensus 119 ~LATC-------------SRDKSVWiWe~--deddEfec~aVL~~HtqDVK~V~WHPt~dlL~S~SYDnTI--k~~~~~~ 181 (312)
T KOG0645|consen 119 YLATC-------------SRDKSVWIWEI--DEDDEFECIAVLQEHTQDVKHVIWHPTEDLLFSCSYDNTI--KVYRDED 181 (312)
T ss_pred EEEEe-------------eCCCeEEEEEe--cCCCcEEEEeeeccccccccEEEEcCCcceeEEeccCCeE--EEEeecC
Confidence 77765 44557899986 2334433 356778889999999977766665555544 6776654
Q ss_pred CCCCCCcEEeecCCCccccCCCCCCCeEeccCCCEEEEEe
Q 002209 489 GSKDVAPRILFDRSSEDVYSDPGSPMMRRTSTGTYVIAKI 528 (953)
Q Consensus 489 ~~~~~~~~~~~~~~~~~~~~~~~~p~~~~SpDG~~l~~~~ 528 (953)
+. +=.-.+..+.....++. +.|.+.|..|+...
T Consensus 182 dd-dW~c~~tl~g~~~TVW~------~~F~~~G~rl~s~s 214 (312)
T KOG0645|consen 182 DD-DWECVQTLDGHENTVWS------LAFDNIGSRLVSCS 214 (312)
T ss_pred CC-CeeEEEEecCccceEEE------EEecCCCceEEEec
Confidence 22 11223333444334444 77899998887775
No 221
>PF09752 DUF2048: Uncharacterized conserved protein (DUF2048); InterPro: IPR019149 This family of proteins has no known function.
Probab=98.70 E-value=8.2e-07 Score=93.05 Aligned_cols=218 Identities=17% Similarity=0.101 Sum_probs=122.5
Q ss_pred EEEEEEcCCCCCCCCCCCccEEEEeCCCCCcCcCCCCcccCCCCCCCCccchHHHHHHHcCcEEEE--cCCCCCCC----
Q 002209 652 LSATLYLPPGYDPSKDGPLPCLFWSYPGEFKSKDAAGQVRGSPNEFPRIGSTSVLLWLARGFAILG--GPTTPIIG---- 725 (953)
Q Consensus 652 ~~~~l~~P~~~~~~~~~~~P~vv~~hGg~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~G~~V~~--~~~~~~~G---- 725 (953)
.+..+++|...+.. ..|+.|++.|. | .+.|-......+..|++.|++.+. .+|++.+-
T Consensus 77 a~~~~~~P~~~~~~---~rp~~IhLagT------------G-Dh~f~rR~~l~a~pLl~~gi~s~~le~Pyyg~RkP~~Q 140 (348)
T PF09752_consen 77 ARFQLLLPKRWDSP---YRPVCIHLAGT------------G-DHGFWRRRRLMARPLLKEGIASLILENPYYGQRKPKDQ 140 (348)
T ss_pred eEEEEEECCccccC---CCceEEEecCC------------C-ccchhhhhhhhhhHHHHcCcceEEEecccccccChhHh
Confidence 45566678765222 37899999883 1 122322233336678888988877 34433221
Q ss_pred --CCChhhhh--hhHHHHHHHHHHHHHHHHHcCCCCCCcEEEEEeChHHHHHHHHHHhCCCcccEEEEcccCCCC-----
Q 002209 726 --EGDEEAND--RFVEQLVACAEAAVEEVVRRGVAHPSKIAVGGHSYGAFMTANLLAHAPHLFCCGIARSGAYNR----- 796 (953)
Q Consensus 726 --~G~~~~~~--~~~~~~~~D~~~~~~~l~~~~~~d~~~i~l~G~S~GG~~a~~~a~~~p~~~~a~v~~~~~~d~----- 796 (953)
.......+ ..+...+.+....+.|+.++++ .+++|.|.||||.||..+++..|.-+..+-+.++.+..
T Consensus 141 ~~s~l~~VsDl~~~g~~~i~E~~~Ll~Wl~~~G~---~~~g~~G~SmGG~~A~laa~~~p~pv~~vp~ls~~sAs~vFt~ 217 (348)
T PF09752_consen 141 RRSSLRNVSDLFVMGRATILESRALLHWLEREGY---GPLGLTGISMGGHMAALAASNWPRPVALVPCLSWSSASVVFTE 217 (348)
T ss_pred hcccccchhHHHHHHhHHHHHHHHHHHHHHhcCC---CceEEEEechhHhhHHhhhhcCCCceeEEEeecccCCCcchhh
Confidence 00000001 1135668888899999999865 49999999999999999999998755554444432210
Q ss_pred -CC---CCcC----------ccccc---------------chhhhhHHHHH----hcCcccccCCCCC-----cEEEEEe
Q 002209 797 -TL---TPFG----------FQNED---------------RTLWEATSTYV----EMSPFMSANKLKK-----PILLVHG 838 (953)
Q Consensus 797 -~~---~~~~----------~~~~~---------------~~~~~~~~~~~----~~sp~~~~~~i~~-----P~Li~~G 838 (953)
.+ ..|. +.+.. ...+.+.+... .+.-..++.++.+ .+.++.+
T Consensus 218 Gvls~~i~W~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ea~~~m~~~md~~T~l~nf~~P~dp~~ii~V~A 297 (348)
T PF09752_consen 218 GVLSNSINWDALEKQFEDTVYEEEISDIPAQNKSLPLDSMEERRRDREALRFMRGVMDSFTHLTNFPVPVDPSAIIFVAA 297 (348)
T ss_pred hhhhcCCCHHHHHHHhcccchhhhhcccccCcccccchhhccccchHHHHHHHHHHHHhhccccccCCCCCCCcEEEEEe
Confidence 00 0010 00000 00000011111 1112233444433 4788999
Q ss_pred CCCCCCCCchHHHHHHHHHHHhCCCcEEEEEeCCCCccCCCcccHHHHHHHHHHHHH
Q 002209 839 EEDNNSGTLTMQSDRFFNALKGHGALCRLVILPFESHGYAARESIMHVLWETDRWLQ 895 (953)
Q Consensus 839 ~~D~~v~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~H~~~~~~~~~~~~~~i~~fl~ 895 (953)
++|..|| ..+...+-+.... +++..+++ ||.-....+...+.+.|.+=|+
T Consensus 298 ~~DaYVP--r~~v~~Lq~~WPG----sEvR~l~g-GHVsA~L~~q~~fR~AI~Daf~ 347 (348)
T PF09752_consen 298 KNDAYVP--RHGVLSLQEIWPG----SEVRYLPG-GHVSAYLLHQEAFRQAIYDAFE 347 (348)
T ss_pred cCceEec--hhhcchHHHhCCC----CeEEEecC-CcEEEeeechHHHHHHHHHHhh
Confidence 9999998 7666666555543 47777888 9975433444555566666554
No 222
>KOG0284 consensus Polyadenylation factor I complex, subunit PFS2 [RNA processing and modification]
Probab=98.70 E-value=1.6e-07 Score=96.98 Aligned_cols=268 Identities=9% Similarity=0.078 Sum_probs=158.8
Q ss_pred CCCCceecCCCCEEEEEecCCCCCccccccccceeceEEecCCCCCCcceeeeeceEEEEccCCCCCCceeeeecCCCCC
Q 002209 110 PLPALSFSPQRDKILFLKRRALPPLEELARPEEKLAGLRIDGKCNTRSRMSFYTGIGIHQLFPDGKLGQEIEIQGFPDGA 189 (953)
Q Consensus 110 ~~~~~~~SPDG~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~i~~~~~~g~~~~~~~l~~~~~~~ 189 (953)
.+..+.|+|+|++|+..+.. ++.-+|+... -....|. -.+..
T Consensus 98 ~V~~v~WtPeGRRLltgs~S---------------------------------GEFtLWNg~~----fnFEtil-QaHDs 139 (464)
T KOG0284|consen 98 PVNVVRWTPEGRRLLTGSQS---------------------------------GEFTLWNGTS----FNFETIL-QAHDS 139 (464)
T ss_pred ceeeEEEcCCCceeEeeccc---------------------------------ccEEEecCce----eeHHHHh-hhhcc
Confidence 36678999999999988764 2345666421 1211221 11334
Q ss_pred cccceEeccCCCeEEEEEeeccccCCCCcceEEEEECCCCceeecccCCCccccccccceEEecCCeEEEEEecCCCCCC
Q 002209 190 KLNFVTWSQDGKHLAFSIRIDAEDSSSSKLRVWVADVDTGKARPLFQSPDIYLNAIFDNFVWVNNSTLLVCTIPLLRGDP 269 (953)
Q Consensus 190 ~~~~~~wSPDG~~laf~~~~~~~~~~~~~~~l~~~d~~~g~~~~lt~~~~~~~~~~~~~~~wspDg~~l~~~~~~~~~~~ 269 (953)
.++...||+||.+++. ++...-|-.++++-....-+....... +..+++||....++..+
T Consensus 140 ~Vr~m~ws~~g~wmiS---------gD~gG~iKyWqpnmnnVk~~~ahh~ea----IRdlafSpnDskF~t~S------- 199 (464)
T KOG0284|consen 140 PVRTMKWSHNGTWMIS---------GDKGGMIKYWQPNMNNVKIIQAHHAEA----IRDLAFSPNDSKFLTCS------- 199 (464)
T ss_pred cceeEEEccCCCEEEE---------cCCCceEEecccchhhhHHhhHhhhhh----hheeccCCCCceeEEec-------
Confidence 7899999999999987 334445555555443332222222121 77899998766665441
Q ss_pred CCCCCCCCCCceeecCCCccccchhhhhhcCCcchhhhhhhhccceEEEEEc--CCceeEeCCC-CcccccccCCCCcEE
Q 002209 270 PKKPLVPLGPKMQSNEKRDIIQVRTFQDLLKDEYDEDLFDYYATTQLVLVSL--DGTVKEIGPP-AVYTSLDPSPDEKYI 346 (953)
Q Consensus 270 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~l~~~~~--~g~~~~l~~~-~~~~~~~~SpDG~~l 346 (953)
..+.|-+.|. ..+.+.|... ..+.+++|.|.-..|
T Consensus 200 ------------------------------------------dDg~ikiWdf~~~kee~vL~GHgwdVksvdWHP~kgLi 237 (464)
T KOG0284|consen 200 ------------------------------------------DDGTIKIWDFRMPKEERVLRGHGWDVKSVDWHPTKGLI 237 (464)
T ss_pred ------------------------------------------CCCeEEEEeccCCchhheeccCCCCcceeccCCcccee
Confidence 1133445555 3455666655 778999999977666
Q ss_pred EEEEecCCccccccCCCCCcceEEEeccCc-eEEEeccCCCcccCCccccccccCccceeeccCCCCceEEEEeccCCCc
Q 002209 347 LISSIHRPYSFIVPCGRFPRQVGVWTTDGI-FVRELCDLPLAEDIPIAFNSVRKGMRSINWRSDKPSTLYWAETQDGGDA 425 (953)
Q Consensus 347 ~~~~~~~~~~~~~~~~~~~~~i~~~d~~g~-~~~~l~~~~~~~~~p~~~~~~~~~~~~~~wspDg~~i~~~~~~~~~~~~ 425 (953)
+..+.++ -|.+||..++ .+-.+..+. .-+-.+.|+|+|..|+-.
T Consensus 238 asgskDn-------------lVKlWDprSg~cl~tlh~HK-------------ntVl~~~f~~n~N~Llt~--------- 282 (464)
T KOG0284|consen 238 ASGSKDN-------------LVKLWDPRSGSCLATLHGHK-------------NTVLAVKFNPNGNWLLTG--------- 282 (464)
T ss_pred EEccCCc-------------eeEeecCCCcchhhhhhhcc-------------ceEEEEEEcCCCCeeEEc---------
Confidence 6555332 6889998743 333333322 234568899999766554
Q ss_pred ccccccCCeEEEEecCCCCCCCceEEeecccccCCeeeccCCceEEEEEecccCceEEEEEcCCCCCCCcEEeecCCCcc
Q 002209 426 KVEVTPRDIIYTQQAEPVQGEGPEILHKLDLRYGGISWCDDSLALVYESWYKTRRTRTWVISPGSKDVAPRILFDRSSED 505 (953)
Q Consensus 426 ~~~~~~~~~l~~~d~~~~~g~~~~~l~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~ 505 (953)
+.+..+-++|+ ..=.+...+-.+...+..+.|+|=-..|+.+...++. ...|.+++.. ....+...+...
T Consensus 283 ----skD~~~kv~Di--R~mkEl~~~r~Hkkdv~~~~WhP~~~~lftsgg~Dgs-vvh~~v~~~~---p~~~i~~AHd~~ 352 (464)
T KOG0284|consen 283 ----SKDQSCKVFDI--RTMKELFTYRGHKKDVTSLTWHPLNESLFTSGGSDGS-VVHWVVGLEE---PLGEIPPAHDGE 352 (464)
T ss_pred ----cCCceEEEEeh--hHhHHHHHhhcchhhheeeccccccccceeeccCCCc-eEEEeccccc---cccCCCcccccc
Confidence 44556778886 1112233344566778889999988777766543322 3456665333 222233333333
Q ss_pred ccCCCCCCCeEeccCCCEEEEEe
Q 002209 506 VYSDPGSPMMRRTSTGTYVIAKI 528 (953)
Q Consensus 506 ~~~~~~~p~~~~SpDG~~l~~~~ 528 (953)
+.+ ++|.|=|..|+..+
T Consensus 353 iws------l~~hPlGhil~tgs 369 (464)
T KOG0284|consen 353 IWS------LAYHPLGHILATGS 369 (464)
T ss_pred eee------eeccccceeEeecC
Confidence 444 77888887776654
No 223
>KOG1274 consensus WD40 repeat protein [General function prediction only]
Probab=98.68 E-value=1.4e-06 Score=99.05 Aligned_cols=256 Identities=13% Similarity=0.133 Sum_probs=152.1
Q ss_pred CCCceecCCCCEEEEEecCCCCCccccccccceeceEE--------ecCCCCCCcceeeeeceEEEEccCCCCCCceeee
Q 002209 111 LPALSFSPQRDKILFLKRRALPPLEELARPEEKLAGLR--------IDGKCNTRSRMSFYTGIGIHQLFPDGKLGQEIEI 182 (953)
Q Consensus 111 ~~~~~~SPDG~~la~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~~~~~~~~~~i~i~~~~~~g~~~~~~~l 182 (953)
...+.|.|||+.|.....++...++.-..++.+...+. +.-..+.....+..+.|.++.... +. ...-|
T Consensus 16 ~t~i~~d~~gefi~tcgsdg~ir~~~~~sd~e~P~ti~~~g~~v~~ia~~s~~f~~~s~~~tv~~y~fps-~~--~~~iL 92 (933)
T KOG1274|consen 16 LTLICYDPDGEFICTCGSDGDIRKWKTNSDEEEPETIDISGELVSSIACYSNHFLTGSEQNTVLRYKFPS-GE--EDTIL 92 (933)
T ss_pred eEEEEEcCCCCEEEEecCCCceEEeecCCcccCCchhhccCceeEEEeecccceEEeeccceEEEeeCCC-CC--cccee
Confidence 44678999999888777664433333332222111111 111122222222235567777633 21 12233
Q ss_pred ecCCCCCcccceEeccCCCeEEEEEeeccccCCCCcceEEEEECCCCceeecccCCCccccccccceEEecCCeEEEEEe
Q 002209 183 QGFPDGAKLNFVTWSQDGKHLAFSIRIDAEDSSSSKLRVWVADVDTGKARPLFQSPDIYLNAIFDNFVWVNNSTLLVCTI 262 (953)
Q Consensus 183 ~~~~~~~~~~~~~wSPDG~~laf~~~~~~~~~~~~~~~l~~~d~~~g~~~~lt~~~~~~~~~~~~~~~wspDg~~l~~~~ 262 (953)
+.++ ..+...+++-||++||+.+ ....|-+++.+.+.....+...+.. +..+.+.|.|.+|+++.
T Consensus 93 ~Rft--lp~r~~~v~g~g~~iaags---------dD~~vK~~~~~D~s~~~~lrgh~ap----Vl~l~~~p~~~fLAvss 157 (933)
T KOG1274|consen 93 ARFT--LPIRDLAVSGSGKMIAAGS---------DDTAVKLLNLDDSSQEKVLRGHDAP----VLQLSYDPKGNFLAVSS 157 (933)
T ss_pred eeee--ccceEEEEecCCcEEEeec---------CceeEEEEeccccchheeecccCCc----eeeeeEcCCCCEEEEEe
Confidence 3333 3578889999999999944 4778888988876655554443332 77899999999999872
Q ss_pred cCCCCCCCCCCCCCCCCceeecCCCccccchhhhhhcCCcchhhhhhhhccceEEEEEc-CCcee-EeC---CC------
Q 002209 263 PLLRGDPPKKPLVPLGPKMQSNEKRDIIQVRTFQDLLKDEYDEDLFDYYATTQLVLVSL-DGTVK-EIG---PP------ 331 (953)
Q Consensus 263 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~l~~~~~-~g~~~-~l~---~~------ 331 (953)
..+.+.++++ +|... .++ ..
T Consensus 158 -------------------------------------------------~dG~v~iw~~~~~~~~~tl~~v~k~n~~~~s 188 (933)
T KOG1274|consen 158 -------------------------------------------------CDGKVQIWDLQDGILSKTLTGVDKDNEFILS 188 (933)
T ss_pred -------------------------------------------------cCceEEEEEcccchhhhhcccCCcccccccc
Confidence 3356777777 66322 121 11
Q ss_pred CcccccccCCCCcEEEEEEecCCccccccCCCCCcceEEEeccCceEEEeccCCCcccCCccccccccCccceeeccCCC
Q 002209 332 AVYTSLDPSPDEKYILISSIHRPYSFIVPCGRFPRQVGVWTTDGIFVRELCDLPLAEDIPIAFNSVRKGMRSINWRSDKP 411 (953)
Q Consensus 332 ~~~~~~~~SpDG~~l~~~~~~~~~~~~~~~~~~~~~i~~~d~~g~~~~~l~~~~~~~~~p~~~~~~~~~~~~~~wspDg~ 411 (953)
..+..++|+|||..+++...++ .|.+++.++.+.......... ...+..++|||+|+
T Consensus 189 ~i~~~~aW~Pk~g~la~~~~d~-------------~Vkvy~r~~we~~f~Lr~~~~----------ss~~~~~~wsPnG~ 245 (933)
T KOG1274|consen 189 RICTRLAWHPKGGTLAVPPVDN-------------TVKVYSRKGWELQFKLRDKLS----------SSKFSDLQWSPNGK 245 (933)
T ss_pred ceeeeeeecCCCCeEEeeccCC-------------eEEEEccCCceeheeeccccc----------ccceEEEEEcCCCc
Confidence 2345789999988888777554 788888887654432221111 12245689999999
Q ss_pred CceEEEEeccCCCcccccccCCeEEEEecCCCCCCCceEEeecccccCCeeeccCCceEEEEEe
Q 002209 412 STLYWAETQDGGDAKVEVTPRDIIYTQQAEPVQGEGPEILHKLDLRYGGISWCDDSLALVYESW 475 (953)
Q Consensus 412 ~i~~~~~~~~~~~~~~~~~~~~~l~~~d~~~~~g~~~~~l~~~~~~~~~~~~SpDg~~l~~~~~ 475 (953)
+||-. .-.++|.+||. +.-. + ......+...+|-|+...|-+..+
T Consensus 246 YiAAs-------------~~~g~I~vWnv---~t~~--~-~~~~~~Vc~~aw~p~~n~it~~~~ 290 (933)
T KOG1274|consen 246 YIAAS-------------TLDGQILVWNV---DTHE--R-HEFKRAVCCEAWKPNANAITLITA 290 (933)
T ss_pred EEeee-------------ccCCcEEEEec---ccch--h-ccccceeEEEecCCCCCeeEEEee
Confidence 88876 45678888986 3211 1 122233455677777776666543
No 224
>KOG2315 consensus Predicted translation initiation factor related to eIF-3a [Translation, ribosomal structure and biogenesis]
Probab=98.68 E-value=1.9e-06 Score=93.08 Aligned_cols=243 Identities=13% Similarity=0.140 Sum_probs=147.2
Q ss_pred CCCCceecCCCCEEEEEecCCCCCccccccccceeceEEecCCCCCCcceeeeeceEEEEccCCCCCCceeeeecCCCCC
Q 002209 110 PLPALSFSPQRDKILFLKRRALPPLEELARPEEKLAGLRIDGKCNTRSRMSFYTGIGIHQLFPDGKLGQEIEIQGFPDGA 189 (953)
Q Consensus 110 ~~~~~~~SPDG~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~i~~~~~~g~~~~~~~l~~~~~~~ 189 (953)
..+.++||+|....|..... +++++++.. ..+....|. ..
T Consensus 127 ~~W~~qfs~dEsl~arlv~n----------------------------------ev~f~~~~~--f~~~~~kl~----~~ 166 (566)
T KOG2315|consen 127 NGWVPQFSIDESLAARLVSN----------------------------------EVQFYDLGS--FKTIQHKLS----VS 166 (566)
T ss_pred cCcccccccchhhhhhhhcc----------------------------------eEEEEecCC--ccceeeeee----cc
Confidence 34688889988877776653 678888743 223344443 23
Q ss_pred cccceEeccCCC--eEEEEEeeccccCCCCcceEEEEECCCCceeecccCCCccccccccceEEecCCeEEEEEecCCCC
Q 002209 190 KLNFVTWSQDGK--HLAFSIRIDAEDSSSSKLRVWVADVDTGKARPLFQSPDIYLNAIFDNFVWVNNSTLLVCTIPLLRG 267 (953)
Q Consensus 190 ~~~~~~wSPDG~--~laf~~~~~~~~~~~~~~~l~~~d~~~g~~~~lt~~~~~~~~~~~~~~~wspDg~~l~~~~~~~~~ 267 (953)
.++...+||-+. +||+-. ....+......||.+... +.-..+....- +.+.--.+.|.+-|+-|++.+
T Consensus 167 ~i~~f~lSpgp~~~~vAvyv--Pe~kGaPa~vri~~~~~~-~~~~~~a~ksF--Fkadkvqm~WN~~gt~LLvLa----- 236 (566)
T KOG2315|consen 167 GITMLSLSPGPEPPFVAVYV--PEKKGAPASVRIYKYPEE-GQHQPVANKSF--FKADKVQMKWNKLGTALLVLA----- 236 (566)
T ss_pred ceeeEEecCCCCCceEEEEc--cCCCCCCcEEEEeccccc-cccchhhhccc--cccceeEEEeccCCceEEEEE-----
Confidence 578888898644 444422 111222345566766622 22222211110 111122678999998655541
Q ss_pred CCCCCCCCCCCCceeecCCCccccchhhhhhcCCcchhhhhhhhccceEEEEEcCCceeE--eCCCCcccccccCCCCcE
Q 002209 268 DPPKKPLVPLGPKMQSNEKRDIIQVRTFQDLLKDEYDEDLFDYYATTQLVLVSLDGTVKE--IGPPAVYTSLDPSPDEKY 345 (953)
Q Consensus 268 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~l~~~~~~g~~~~--l~~~~~~~~~~~SpDG~~ 345 (953)
...-|...-.||+...||.++.+|.... +...+.+.++.|||+|+.
T Consensus 237 --------------------------------stdVDktn~SYYGEq~Lyll~t~g~s~~V~L~k~GPVhdv~W~~s~~E 284 (566)
T KOG2315|consen 237 --------------------------------STDVDKTNASYYGEQTLYLLATQGESVSVPLLKEGPVHDVTWSPSGRE 284 (566)
T ss_pred --------------------------------EEeecCCCccccccceEEEEEecCceEEEecCCCCCceEEEECCCCCE
Confidence 2233444556679999999999765444 444488999999999998
Q ss_pred EEEEEecCCccccccCCCCCcceEEEeccCceEEEeccCCCcccCCccccccccCccceeeccCCCCceEEEEeccCCCc
Q 002209 346 ILISSIHRPYSFIVPCGRFPRQVGVWTTDGIFVRELCDLPLAEDIPIAFNSVRKGMRSINWRSDKPSTLYWAETQDGGDA 425 (953)
Q Consensus 346 l~~~~~~~~~~~~~~~~~~~~~i~~~d~~g~~~~~l~~~~~~~~~p~~~~~~~~~~~~~~wspDg~~i~~~~~~~~~~~~ 425 (953)
.++.-.- .+..+.++|+++.-+-.+...+. ..+-|+|.|..|++.-- |
T Consensus 285 F~VvyGf-----------MPAkvtifnlr~~~v~df~egpR---------------N~~~fnp~g~ii~lAGF---G--- 332 (566)
T KOG2315|consen 285 FAVVYGF-----------MPAKVTIFNLRGKPVFDFPEGPR---------------NTAFFNPHGNIILLAGF---G--- 332 (566)
T ss_pred EEEEEec-----------ccceEEEEcCCCCEeEeCCCCCc---------------cceEECCCCCEEEEeec---C---
Confidence 8877522 24578889998766554443221 23779999998777610 0
Q ss_pred ccccccCCeEEEEecCCCCCCCceEEeecc-cccCCeeeccCCceEEEEEe
Q 002209 426 KVEVTPRDIIYTQQAEPVQGEGPEILHKLD-LRYGGISWCDDSLALVYESW 475 (953)
Q Consensus 426 ~~~~~~~~~l~~~d~~~~~g~~~~~l~~~~-~~~~~~~~SpDg~~l~~~~~ 475 (953)
.-.+.+-+||+ . ..+.+.... .+...+.|||||++++.+..
T Consensus 333 ----NL~G~mEvwDv---~--n~K~i~~~~a~~tt~~eW~PdGe~flTATT 374 (566)
T KOG2315|consen 333 ----NLPGDMEVWDV---P--NRKLIAKFKAANTTVFEWSPDGEYFLTATT 374 (566)
T ss_pred ----CCCCceEEEec---c--chhhccccccCCceEEEEcCCCcEEEEEec
Confidence 23457888886 2 234444433 23455899999999887653
No 225
>KOG0305 consensus Anaphase promoting complex, Cdc20, Cdh1, and Ama1 subunits [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=98.67 E-value=3.2e-06 Score=93.06 Aligned_cols=270 Identities=11% Similarity=0.088 Sum_probs=162.8
Q ss_pred CcccceEeccCCCeEEEEEeeccccCCCCcceEEEEECCCCceeecccCCCccccccccceEEecCCeEEEEEecCCCCC
Q 002209 189 AKLNFVTWSQDGKHLAFSIRIDAEDSSSSKLRVWVADVDTGKARPLFQSPDIYLNAIFDNFVWVNNSTLLVCTIPLLRGD 268 (953)
Q Consensus 189 ~~~~~~~wSPDG~~laf~~~~~~~~~~~~~~~l~~~d~~~g~~~~lt~~~~~~~~~~~~~~~wspDg~~l~~~~~~~~~~ 268 (953)
.+.+...||. ...||..- ...+|+++..+|+...|....... +.++.|+++|+.|++..
T Consensus 178 fY~nlldWss-~n~laVal----------g~~vylW~~~s~~v~~l~~~~~~~----vtSv~ws~~G~~LavG~------ 236 (484)
T KOG0305|consen 178 FYLNLLDWSS-ANVLAVAL----------GQSVYLWSASSGSVTELCSFGEEL----VTSVKWSPDGSHLAVGT------ 236 (484)
T ss_pred HhhhHhhccc-CCeEEEEe----------cceEEEEecCCCceEEeEecCCCc----eEEEEECCCCCEEEEee------
Confidence 3566678994 44566543 568999999999998888764332 78999999999999872
Q ss_pred CCCCCCCCCCCceeecCCCccccchhhhhhcCCcchhhhhhhhccceEEEEEc--CCceeEeCC-C-CcccccccCCCCc
Q 002209 269 PPKKPLVPLGPKMQSNEKRDIIQVRTFQDLLKDEYDEDLFDYYATTQLVLVSL--DGTVKEIGP-P-AVYTSLDPSPDEK 344 (953)
Q Consensus 269 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~l~~~~~--~g~~~~l~~-~-~~~~~~~~SpDG~ 344 (953)
..+.+.++|. ....+.+.. . ..+..++|. +.
T Consensus 237 -------------------------------------------~~g~v~iwD~~~~k~~~~~~~~h~~rvg~laW~--~~ 271 (484)
T KOG0305|consen 237 -------------------------------------------SDGTVQIWDVKEQKKTRTLRGSHASRVGSLAWN--SS 271 (484)
T ss_pred -------------------------------------------cCCeEEEEehhhccccccccCCcCceeEEEecc--Cc
Confidence 2245566676 334555555 3 778888898 33
Q ss_pred EEEEEEecCCccccccCCCCCcceEEEeccCceEEEeccCCCcccCCccccccccCccceeeccCCCCceEEEEeccCCC
Q 002209 345 YILISSIHRPYSFIVPCGRFPRQVGVWTTDGIFVRELCDLPLAEDIPIAFNSVRKGMRSINWRSDKPSTLYWAETQDGGD 424 (953)
Q Consensus 345 ~l~~~~~~~~~~~~~~~~~~~~~i~~~d~~g~~~~~l~~~~~~~~~p~~~~~~~~~~~~~~wspDg~~i~~~~~~~~~~~ 424 (953)
.+...+. .+.|..+|+...+...-+ ..++...+-.+.|++|++.++-.
T Consensus 272 ~lssGsr-------------~~~I~~~dvR~~~~~~~~-----------~~~H~qeVCgLkws~d~~~lASG-------- 319 (484)
T KOG0305|consen 272 VLSSGSR-------------DGKILNHDVRISQHVVST-----------LQGHRQEVCGLKWSPDGNQLASG-------- 319 (484)
T ss_pred eEEEecC-------------CCcEEEEEEecchhhhhh-----------hhcccceeeeeEECCCCCeeccC--------
Confidence 3333331 236777777532211000 11222345679999999976654
Q ss_pred cccccccCCeEEEEecCCCCCCCceEEeecccccCCeeeccCCceEEEEEecccCceEEEEEcCCCCCCCcEEeecCCCc
Q 002209 425 AKVEVTPRDIIYTQQAEPVQGEGPEILHKLDLRYGGISWCDDSLALVYESWYKTRRTRTWVISPGSKDVAPRILFDRSSE 504 (953)
Q Consensus 425 ~~~~~~~~~~l~~~d~~~~~g~~~~~l~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~ 504 (953)
+.++.+++||. ........++.+...+..++|+|=.+-|+.+..... ...|...|..++ +...-.+...+
T Consensus 320 -----gnDN~~~Iwd~--~~~~p~~~~~~H~aAVKA~awcP~q~~lLAsGGGs~-D~~i~fwn~~~g--~~i~~vdtgsQ 389 (484)
T KOG0305|consen 320 -----GNDNVVFIWDG--LSPEPKFTFTEHTAAVKALAWCPWQSGLLATGGGSA-DRCIKFWNTNTG--ARIDSVDTGSQ 389 (484)
T ss_pred -----CCccceEeccC--CCccccEEEeccceeeeEeeeCCCccCceEEcCCCc-ccEEEEEEcCCC--cEecccccCCc
Confidence 44678899985 233344567888899999999998777666543221 235556666664 22221221111
Q ss_pred cccCCCCCCCeEeccCCCEEEEEeeeccCCCcEEEEecCCCCCCCCCCeEEEEECCCCceEEEecc-CcccceeeeEeec
Q 002209 505 DVYSDPGSPMMRRTSTGTYVIAKIKKENDEGTYILLNGNGATPEGNIPFLDLFDINTGSKERIWES-DKEKYYETTVALM 583 (953)
Q Consensus 505 ~~~~~~~~p~~~~SpDG~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~d~~~~~~~~l~~~-~~~~~~~~~~~~~ 583 (953)
+-+ +.||+..+-|+...-.. ...|-+|+..+-+......+ ... +..
T Consensus 390 -Vcs------L~Wsk~~kEi~sthG~s-------------------~n~i~lw~~ps~~~~~~l~gH~~R-----Vl~-- 436 (484)
T KOG0305|consen 390 -VCS------LIWSKKYKELLSTHGYS-------------------ENQITLWKYPSMKLVAELLGHTSR-----VLY-- 436 (484)
T ss_pred -eee------EEEcCCCCEEEEecCCC-------------------CCcEEEEeccccceeeeecCCcce-----eEE--
Confidence 122 78999998887765211 12466777665443332222 221 222
Q ss_pred cCCccccccccCCEEEEEEec
Q 002209 584 SDQTEGDLYLNQLKILTSKES 604 (953)
Q Consensus 584 ~~~~~~~~s~dg~~l~~~~~~ 604 (953)
.++||||.+++.....
T Consensus 437 -----la~SPdg~~i~t~a~D 452 (484)
T KOG0305|consen 437 -----LALSPDGETIVTGAAD 452 (484)
T ss_pred -----EEECCCCCEEEEeccc
Confidence 3678998877754443
No 226
>COG5354 Uncharacterized protein, contains Trp-Asp (WD) repeat [General function prediction only]
Probab=98.66 E-value=1.1e-05 Score=86.16 Aligned_cols=302 Identities=12% Similarity=0.145 Sum_probs=160.7
Q ss_pred hhcCCCCCCceecCCCCEEEEEecCCCCCccccccccceeceEEecCCCCCCcceeeeeceEEEEccCCCCCCceeeeec
Q 002209 105 IVDAPPLPALSFSPQRDKILFLKRRALPPLEELARPEEKLAGLRIDGKCNTRSRMSFYTGIGIHQLFPDGKLGQEIEIQG 184 (953)
Q Consensus 105 ~~~~~~~~~~~~SPDG~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~i~~~~~~g~~~~~~~l~~ 184 (953)
-+..+.+..+.|||.|++|..-++. ++ ++|+... ......+++.+||..+ |..-.......
T Consensus 68 ~~~~~~V~~~~fSP~~kYL~tw~~~---pi--------------~~pe~e~-sp~~~~n~~~vwd~~s-g~iv~sf~~~~ 128 (561)
T COG5354 68 RFRHPDVKYLDFSPNEKYLVTWSRE---PI--------------IEPEIEI-SPFTSKNNVFVWDIAS-GMIVFSFNGIS 128 (561)
T ss_pred eeecCCceecccCcccceeeeeccC---Cc--------------cChhhcc-CCccccCceeEEeccC-ceeEeeccccC
Confidence 3445678899999999999887764 11 1111111 1111223689999843 21111111111
Q ss_pred CCCCCcccceEeccCCCeEEEEEeeccccCCCCcceEEEEECCCCceeecccCCCcccc-ccccceEEecCC--eEEEEE
Q 002209 185 FPDGAKLNFVTWSQDGKHLAFSIRIDAEDSSSSKLRVWVADVDTGKARPLFQSPDIYLN-AIFDNFVWVNNS--TLLVCT 261 (953)
Q Consensus 185 ~~~~~~~~~~~wSPDG~~laf~~~~~~~~~~~~~~~l~~~d~~~g~~~~lt~~~~~~~~-~~~~~~~wspDg--~~l~~~ 261 (953)
.+.- .-....||-|.+++|... ...|+++++ ++...+. +...+. ..+..+.|||.| ..|+|.
T Consensus 129 q~~~-~Wp~~k~s~~D~y~ARvv----------~~sl~i~e~-t~n~~~~---p~~~lr~~gi~dFsisP~~n~~~la~~ 193 (561)
T COG5354 129 QPYL-GWPVLKFSIDDKYVARVV----------GSSLYIHEI-TDNIEEH---PFKNLRPVGILDFSISPEGNHDELAYW 193 (561)
T ss_pred Cccc-ccceeeeeecchhhhhhc----------cCeEEEEec-CCccccC---chhhccccceeeEEecCCCCCceEEEE
Confidence 1100 122568999999998865 568899987 4433222 111011 116689999874 457777
Q ss_pred ecCCCCCCCCCCCCCCCCceeecCCCccccchhhhhhcCCcchhhhhhhhccceEEEEEcCCceeEeCCC-CcccccccC
Q 002209 262 IPLLRGDPPKKPLVPLGPKMQSNEKRDIIQVRTFQDLLKDEYDEDLFDYYATTQLVLVSLDGTVKEIGPP-AVYTSLDPS 340 (953)
Q Consensus 262 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~l~~~~~~g~~~~l~~~-~~~~~~~~S 340 (953)
++...+.. +.-.|+.+..+......+-. ..-..+.|.
T Consensus 194 tPEk~~kp------------------------------------------a~~~i~sIp~~s~l~tk~lfk~~~~qLkW~ 231 (561)
T COG5354 194 TPEKLNKP------------------------------------------AMVRILSIPKNSVLVTKNLFKVSGVQLKWQ 231 (561)
T ss_pred ccccCCCC------------------------------------------cEEEEEEccCCCeeeeeeeEeecccEEEEe
Confidence 55444331 11223333322211111111 222357899
Q ss_pred CCCcEEEEEEecCCccccccCCCC--CcceEEEeccCceEEEeccCCCcccCCccccccccCccceeeccCCCCceEEEE
Q 002209 341 PDEKYILISSIHRPYSFIVPCGRF--PRQVGVWTTDGIFVRELCDLPLAEDIPIAFNSVRKGMRSINWRSDKPSTLYWAE 418 (953)
Q Consensus 341 pDG~~l~~~~~~~~~~~~~~~~~~--~~~i~~~d~~g~~~~~l~~~~~~~~~p~~~~~~~~~~~~~~wspDg~~i~~~~~ 418 (953)
+.|++|.+...+.--+ ...+ ..+++++++.+..++...... +-+-++.|+|+++..+...-
T Consensus 232 ~~g~~ll~l~~t~~ks----nKsyfgesnLyl~~~~e~~i~V~~~~~-------------~pVhdf~W~p~S~~F~vi~g 294 (561)
T COG5354 232 VLGKYLLVLVMTHTKS----NKSYFGESNLYLLRITERSIPVEKDLK-------------DPVHDFTWEPLSSRFAVISG 294 (561)
T ss_pred cCCceEEEEEEEeeec----ccceeccceEEEEeecccccceecccc-------------ccceeeeecccCCceeEEec
Confidence 9999999887654211 1111 248999988855544332111 12357899999998777621
Q ss_pred eccCCCcccccccCCeEEEEecCCCCCCCceEEeecccccCCeeeccCCceEEEEEecccCceEEEEEcCCCCCCCcEEe
Q 002209 419 TQDGGDAKVEVTPRDIIYTQQAEPVQGEGPEILHKLDLRYGGISWCDDSLALVYESWYKTRRTRTWVISPGSKDVAPRIL 498 (953)
Q Consensus 419 ~~~~~~~~~~~~~~~~l~~~d~~~~~g~~~~~l~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~l~~~d~~~~~~~~~~~ 498 (953)
.+ ...+-.+++ .+. ......+..-..+.|||.+++++++..++.. ..+-+++..+. ...+
T Consensus 295 ~~-----------pa~~s~~~l---r~N--l~~~~Pe~~rNT~~fsp~~r~il~agF~nl~-gni~i~~~~~r---f~~~ 354 (561)
T COG5354 295 YM-----------PASVSVFDL---RGN--LRFYFPEQKRNTIFFSPHERYILFAGFDNLQ-GNIEIFDPAGR---FKVA 354 (561)
T ss_pred cc-----------ccceeeccc---ccc--eEEecCCcccccccccCcccEEEEecCCccc-cceEEeccCCc---eEEE
Confidence 11 113344443 322 2223334444568899999999998765532 35666676663 2332
Q ss_pred --ecCCCccccCCCCCCCeEeccCCCEEEEE
Q 002209 499 --FDRSSEDVYSDPGSPMMRRTSTGTYVIAK 527 (953)
Q Consensus 499 --~~~~~~~~~~~~~~p~~~~SpDG~~l~~~ 527 (953)
++..... + ..|||||+++...
T Consensus 355 ~~~~~~n~s-~-------~~wspd~qF~~~~ 377 (561)
T COG5354 355 GAFNGLNTS-Y-------CDWSPDGQFYDTD 377 (561)
T ss_pred EEeecCCce-E-------eeccCCceEEEec
Confidence 2221111 1 4599999876544
No 227
>KOG2315 consensus Predicted translation initiation factor related to eIF-3a [Translation, ribosomal structure and biogenesis]
Probab=98.66 E-value=1.6e-05 Score=86.06 Aligned_cols=333 Identities=12% Similarity=0.077 Sum_probs=179.9
Q ss_pred CCceecCCCCEEEEEecCCCCCccccccccceeceEEecCCCCCCcceeeeeceEEEEccCCCCCCceeeeecCCCCCcc
Q 002209 112 PALSFSPQRDKILFLKRRALPPLEELARPEEKLAGLRIDGKCNTRSRMSFYTGIGIHQLFPDGKLGQEIEIQGFPDGAKL 191 (953)
Q Consensus 112 ~~~~~SPDG~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~i~~~~~~g~~~~~~~l~~~~~~~~~ 191 (953)
....+|++|+.+|+...+ .++|.+... .. ..++..+. ..
T Consensus 38 ~v~~~S~~G~lfA~~~~~----------------------------------~v~i~~~~~----~~-~~lt~~~~--~~ 76 (566)
T KOG2315|consen 38 NVFAYSNNGRLFAYSDNQ----------------------------------VVKVFEIAT----LK-VVLCVELK--KT 76 (566)
T ss_pred eeEEEcCCCcEEEEEcCC----------------------------------eEEEEEccC----Cc-EEEEeccc--ee
Confidence 456789999999998874 668877643 11 33443332 57
Q ss_pred cceEeccCCCeEEEEEeeccccC-CCCcceEEEEECCCCceeecccCCCccccccccceEEecCCeEEEEEecCCCCCCC
Q 002209 192 NFVTWSQDGKHLAFSIRIDAEDS-SSSKLRVWVADVDTGKARPLFQSPDIYLNAIFDNFVWVNNSTLLVCTIPLLRGDPP 270 (953)
Q Consensus 192 ~~~~wSPDG~~laf~~~~~~~~~-~~~~~~l~~~d~~~g~~~~lt~~~~~~~~~~~~~~~wspDg~~l~~~~~~~~~~~~ 270 (953)
....+||-|..|..-.......+ ..+..++-+++++++..+--...... + -..+.||.|....+..
T Consensus 77 ~~L~fSP~g~yL~T~e~~~i~~~~~~~~pn~~v~~vet~~~~s~~q~k~Q---~-~W~~qfs~dEsl~arl--------- 143 (566)
T KOG2315|consen 77 YDLLFSPKGNYLLTWEPWAIYGPKNASNPNVLVYNVETGVQRSQIQKKMQ---N-GWVPQFSIDESLAARL--------- 143 (566)
T ss_pred eeeeecccccccccccccccccCCCCCCCceeeeeeccceehhheehhhh---c-Ccccccccchhhhhhh---------
Confidence 88999999998876444332222 23346777777777433211111110 0 0157788777655533
Q ss_pred CCCCCCCCCceeecCCCccccchhhhhhcCCcchhhhhhhhccceEEEEEc---CCceeEeCCCCcccccccCCCCcEEE
Q 002209 271 KKPLVPLGPKMQSNEKRDIIQVRTFQDLLKDEYDEDLFDYYATTQLVLVSL---DGTVKEIGPPAVYTSLDPSPDEKYIL 347 (953)
Q Consensus 271 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~l~~~~~---~g~~~~l~~~~~~~~~~~SpDG~~l~ 347 (953)
..+.++.+++ .+....|.. ..++.+.+||-+..-.
T Consensus 144 -----------------------------------------v~nev~f~~~~~f~~~~~kl~~-~~i~~f~lSpgp~~~~ 181 (566)
T KOG2315|consen 144 -----------------------------------------VSNEVQFYDLGSFKTIQHKLSV-SGITMLSLSPGPEPPF 181 (566)
T ss_pred -----------------------------------------hcceEEEEecCCccceeeeeec-cceeeEEecCCCCCce
Confidence 2245556665 233333332 4677788888655433
Q ss_pred EEEecCCccccccCCCCCcceEEEecc-CceEEEeccCCCcccCCccccccccCccceeeccCCCCceEEEEe-ccCCCc
Q 002209 348 ISSIHRPYSFIVPCGRFPRQVGVWTTD-GIFVRELCDLPLAEDIPIAFNSVRKGMRSINWRSDKPSTLYWAET-QDGGDA 425 (953)
Q Consensus 348 ~~~~~~~~~~~~~~~~~~~~i~~~d~~-g~~~~~l~~~~~~~~~p~~~~~~~~~~~~~~wspDg~~i~~~~~~-~~~~~~ 425 (953)
+..... . ....+..+.+|... .+....+..-.. |- .....+.|.+-|+.|+..+.. -|..+.
T Consensus 182 vAvyvP-e-----~kGaPa~vri~~~~~~~~~~~~a~ksF-------Fk---adkvqm~WN~~gt~LLvLastdVDktn~ 245 (566)
T KOG2315|consen 182 VAVYVP-E-----KKGAPASVRIYKYPEEGQHQPVANKSF-------FK---ADKVQMKWNKLGTALLVLASTDVDKTNA 245 (566)
T ss_pred EEEEcc-C-----CCCCCcEEEEeccccccccchhhhccc-------cc---cceeEEEeccCCceEEEEEEEeecCCCc
Confidence 332111 0 11223455555443 111111111110 00 011357899999988877432 233222
Q ss_pred ccccccCCeEEEEecCCCCCCCceEE-eecccccCCeeeccCCceEEEEEecccCceEEEEEcCCCCCCCcEEeecCCCc
Q 002209 426 KVEVTPRDIIYTQQAEPVQGEGPEIL-HKLDLRYGGISWCDDSLALVYESWYKTRRTRTWVISPGSKDVAPRILFDRSSE 504 (953)
Q Consensus 426 ~~~~~~~~~l~~~d~~~~~g~~~~~l-~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~ 504 (953)
.+ -+...||+++. + |....+ ....+.+..+.|+|+|+.++........ .+-++|+.+. .+++-..+
T Consensus 246 SY--YGEq~Lyll~t---~-g~s~~V~L~k~GPVhdv~W~~s~~EF~VvyGfMPA--kvtifnlr~~-----~v~df~eg 312 (566)
T KOG2315|consen 246 SY--YGEQTLYLLAT---Q-GESVSVPLLKEGPVHDVTWSPSGREFAVVYGFMPA--KVTIFNLRGK-----PVFDFPEG 312 (566)
T ss_pred cc--cccceEEEEEe---c-CceEEEecCCCCCceEEEECCCCCEEEEEEecccc--eEEEEcCCCC-----EeEeCCCC
Confidence 22 34567899885 4 343333 2336678889999999987665543333 5666777662 22222222
Q ss_pred cccCCCCCCCeEeccCCCEEEEEeeeccCCCcEEEEecCCCCCCCCCCeEEEEECCCCceEEEeccCcccceeeeEeecc
Q 002209 505 DVYSDPGSPMMRRTSTGTYVIAKIKKENDEGTYILLNGNGATPEGNIPFLDLFDINTGSKERIWESDKEKYYETTVALMS 584 (953)
Q Consensus 505 ~~~~~~~~p~~~~SpDG~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~d~~~~~~~~l~~~~~~~~~~~~~~~~~ 584 (953)
. .+- +-|+|-|+.|++..-+. - ...+-+||..+.+ .|......
T Consensus 313 p-----RN~-~~fnp~g~ii~lAGFGN---------------L---~G~mEvwDv~n~K--~i~~~~a~----------- 355 (566)
T KOG2315|consen 313 P-----RNT-AFFNPHGNIILLAGFGN---------------L---PGDMEVWDVPNRK--LIAKFKAA----------- 355 (566)
T ss_pred C-----ccc-eEECCCCCEEEEeecCC---------------C---CCceEEEeccchh--hccccccC-----------
Confidence 1 111 66999999888765321 1 2238889987633 33332211
Q ss_pred CCccccccccCCEEEEEEecCC
Q 002209 585 DQTEGDLYLNQLKILTSKESKT 606 (953)
Q Consensus 585 ~~~~~~~s~dg~~l~~~~~~~~ 606 (953)
+..-..|+|||++++....++.
T Consensus 356 ~tt~~eW~PdGe~flTATTaPR 377 (566)
T KOG2315|consen 356 NTTVFEWSPDGEYFLTATTAPR 377 (566)
T ss_pred CceEEEEcCCCcEEEEEecccc
Confidence 1112479999998886655543
No 228
>KOG2624 consensus Triglyceride lipase-cholesterol esterase [Lipid transport and metabolism]
Probab=98.63 E-value=1e-06 Score=95.81 Aligned_cols=244 Identities=16% Similarity=0.112 Sum_probs=158.2
Q ss_pred cCCCceEEEEEEcCCCcEEEEEEEcCCCCCCCCCCCccEEEEeCCCCCcCcCCCCcccCCCCCCCCccchHHHHHHHcCc
Q 002209 634 LASLQKELIKYQRKDGVQLSATLYLPPGYDPSKDGPLPCLFWSYPGEFKSKDAAGQVRGSPNEFPRIGSTSVLLWLARGF 713 (953)
Q Consensus 634 ~~~~~~~~~~~~~~dg~~~~~~l~~P~~~~~~~~~~~P~vv~~hGg~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~G~ 713 (953)
.-+++.|..++.+.||. +-..--.|... ++.|+|++.||--..+..+ +.-+|+ ...+-.|+.+||
T Consensus 43 ~~gy~~E~h~V~T~DgY-iL~lhRIp~~~-----~~rp~Vll~HGLl~sS~~W---v~n~p~------~sLaf~LadaGY 107 (403)
T KOG2624|consen 43 KYGYPVEEHEVTTEDGY-ILTLHRIPRGK-----KKRPVVLLQHGLLASSSSW---VLNGPE------QSLAFLLADAGY 107 (403)
T ss_pred HcCCceEEEEEEccCCe-EEEEeeecCCC-----CCCCcEEEeeccccccccc---eecCcc------ccHHHHHHHcCC
Confidence 34577899999999998 44444456542 4589999999943222211 111111 223446889999
Q ss_pred EEEEcCCCCCCCCCCh-----------hhhhhhHHHHHHHHHHHHHHHHHcCCCCCCcEEEEEeChHHHHHHHHHHhCCC
Q 002209 714 AILGGPTTPIIGEGDE-----------EANDRFVEQLVACAEAAVEEVVRRGVAHPSKIAVGGHSYGAFMTANLLAHAPH 782 (953)
Q Consensus 714 ~V~~~~~~~~~G~G~~-----------~~~~~~~~~~~~D~~~~~~~l~~~~~~d~~~i~l~G~S~GG~~a~~~a~~~p~ 782 (953)
-|...+.||. -+++. +..-.+-+-...|+-+.++++.+.- ..+++..+|||.|+.....++...|+
T Consensus 108 DVWLgN~RGn-~ySr~h~~l~~~~~~~FW~FS~~Em~~yDLPA~IdyIL~~T--~~~kl~yvGHSQGtt~~fv~lS~~p~ 184 (403)
T KOG2624|consen 108 DVWLGNNRGN-TYSRKHKKLSPSSDKEFWDFSWHEMGTYDLPAMIDYILEKT--GQEKLHYVGHSQGTTTFFVMLSERPE 184 (403)
T ss_pred ceeeecCcCc-ccchhhcccCCcCCcceeecchhhhhhcCHHHHHHHHHHhc--cccceEEEEEEccchhheehhcccch
Confidence 9999888763 33332 2223345567899999999998752 45799999999999999999988865
Q ss_pred ---cccEEEEcccCCCCCCC------------------CcCccc------c-----------cch---------------
Q 002209 783 ---LFCCGIARSGAYNRTLT------------------PFGFQN------E-----------DRT--------------- 809 (953)
Q Consensus 783 ---~~~a~v~~~~~~d~~~~------------------~~~~~~------~-----------~~~--------------- 809 (953)
+++..++.+|+.-.... ...+.. . ...
T Consensus 185 ~~~kI~~~~aLAP~~~~k~~~~~~~~~~~~~~~~~~~~~~~fg~~~f~p~~~~~~~~~~~~C~~~~~~~~lC~~~~~~~~ 264 (403)
T KOG2624|consen 185 YNKKIKSFIALAPAAFPKHIKSLLNKFLDPFLGAFSLLPLLFGRKEFLPSNLFIKKFARKICSGSKIFADLCSNFLFLLV 264 (403)
T ss_pred hhhhhheeeeecchhhhcccccHHHHhhhhhhhhhhHHHHhcCCccccchhhHHHHHHHHHhcchhHHHHHHHHHHHHHc
Confidence 68888888886422100 000000 0 000
Q ss_pred -----h------------------------h-----------------hhHHHHHh-cCcccccCCCCCcEEEEEeCCCC
Q 002209 810 -----L------------------------W-----------------EATSTYVE-MSPFMSANKLKKPILLVHGEEDN 842 (953)
Q Consensus 810 -----~------------------------~-----------------~~~~~~~~-~sp~~~~~~i~~P~Li~~G~~D~ 842 (953)
. | .+...|.. ..|...+.+++.|+.+..|.+|.
T Consensus 265 G~~~~~~n~~~~~~~~~h~pagtSvk~~~H~~Q~~~s~~f~~yD~G~~~N~~~Y~q~~pP~Y~l~~i~~P~~l~~g~~D~ 344 (403)
T KOG2624|consen 265 GWNSNNWNTTLLPVYLAHLPAGTSVKNIVHWAQIVRSGKFRKYDYGSKRNLKHYGQSTPPEYDLTNIKVPTALYYGDNDW 344 (403)
T ss_pred CcchHhhhhcccchhhccCCCCccHHHHHHHHHHhcCCCccccCCCccccHhhcCCCCCCCCCccccccCEEEEecCCcc
Confidence 0 0 01111111 13455677889999999999999
Q ss_pred CCCCchHHHHHHHHHHHhCCCcEEEEEeCCCCccCC--CcccHHHHHHHHHHHHHHhc
Q 002209 843 NSGTLTMQSDRFFNALKGHGALCRLVILPFESHGYA--ARESIMHVLWETDRWLQKYC 898 (953)
Q Consensus 843 ~v~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~H~~~--~~~~~~~~~~~i~~fl~~~l 898 (953)
.+. +++...+...+..... ...+.+++-+|.-. .....+.++..|++.+.++.
T Consensus 345 l~~--~~DV~~~~~~~~~~~~-~~~~~~~~ynHlDFi~g~da~~~vy~~vi~~~~~~~ 399 (403)
T KOG2624|consen 345 LAD--PEDVLILLLVLPNSVI-KYIVPIPEYNHLDFIWGLDAKEEVYDPVIERLRLFE 399 (403)
T ss_pred cCC--HHHHHHHHHhcccccc-cccccCCCccceeeeeccCcHHHHHHHHHHHHHhhh
Confidence 998 8988888777766544 33444788888632 34456788899999988764
No 229
>TIGR01839 PHA_synth_II poly(R)-hydroxyalkanoic acid synthase, class II. This model represents the class II subfamily of poly(R)-hydroxyalkanoate synthases, which polymerizes hydroxyacyl-CoAs, typically with six to fourteen carbons in the hydroxyacyl backbone into aliphatic esters termed poly(R)-hydroxyalkanoic acids. These polymers accumulate as carbon and energy storage inclusions in many species and can amount to 90 percent of the dry weight of cell.
Probab=98.62 E-value=1.8e-06 Score=97.06 Aligned_cols=88 Identities=13% Similarity=0.014 Sum_probs=62.0
Q ss_pred chHHHHHHHcCcEEEEcCCCCCCCCCChhhhhhhHHHHHHHHHHHHHHHHHcCCCCCCcEEEEEeChHHHHHHH----HH
Q 002209 702 STSVLLWLARGFAILGGPTTPIIGEGDEEANDRFVEQLVACAEAAVEEVVRRGVAHPSKIAVGGHSYGAFMTAN----LL 777 (953)
Q Consensus 702 ~~~~~~la~~G~~V~~~~~~~~~G~G~~~~~~~~~~~~~~D~~~~~~~l~~~~~~d~~~i~l~G~S~GG~~a~~----~a 777 (953)
..+.++|+++||.|+.++- ..-+.+...-. ++..+..+.+|++.+.+.- ..++|.++|+|+||.+++. ++
T Consensus 237 ~SlVr~lv~qG~~VflIsW---~nP~~~~r~~~-ldDYv~~i~~Ald~V~~~t--G~~~vnl~GyC~GGtl~a~~~a~~a 310 (560)
T TIGR01839 237 KSFVQYCLKNQLQVFIISW---RNPDKAHREWG-LSTYVDALKEAVDAVRAIT--GSRDLNLLGACAGGLTCAALVGHLQ 310 (560)
T ss_pred chHHHHHHHcCCeEEEEeC---CCCChhhcCCC-HHHHHHHHHHHHHHHHHhc--CCCCeeEEEECcchHHHHHHHHHHH
Confidence 3567889999999999544 22222222111 2333457888888887752 3568999999999999986 67
Q ss_pred HhCCC-cccEEEEcccCCC
Q 002209 778 AHAPH-LFCCGIARSGAYN 795 (953)
Q Consensus 778 ~~~p~-~~~a~v~~~~~~d 795 (953)
+.+++ +++.++..+...|
T Consensus 311 A~~~~~~V~sltllatplD 329 (560)
T TIGR01839 311 ALGQLRKVNSLTYLVSLLD 329 (560)
T ss_pred hcCCCCceeeEEeeecccc
Confidence 77775 7999888777665
No 230
>KOG0306 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=98.62 E-value=3.6e-06 Score=93.54 Aligned_cols=269 Identities=12% Similarity=0.073 Sum_probs=164.6
Q ss_pred CCCCCCceecCCCCEEEEEecCCCCCccccccccceeceEEecCCCCCCcceeeeeceEEEEccCCCCCCceeeeecCCC
Q 002209 108 APPLPALSFSPQRDKILFLKRRALPPLEELARPEEKLAGLRIDGKCNTRSRMSFYTGIGIHQLFPDGKLGQEIEIQGFPD 187 (953)
Q Consensus 108 ~~~~~~~~~SPDG~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~i~~~~~~g~~~~~~~l~~~~~ 187 (953)
-..+..+.+|.|..-++..... .|.||+..+ .+ .+..++.
T Consensus 373 R~dVRsl~vS~d~~~~~Sga~~----------------------------------SikiWn~~t----~k--ciRTi~~ 412 (888)
T KOG0306|consen 373 RSDVRSLCVSSDSILLASGAGE----------------------------------SIKIWNRDT----LK--CIRTITC 412 (888)
T ss_pred hhheeEEEeecCceeeeecCCC----------------------------------cEEEEEccC----cc--eeEEecc
Confidence 3367788899888666555442 578998843 22 3333444
Q ss_pred CCcccceEeccCCCeEEEEEeeccccCCCCcceEEEEECCCCceeecccCCCccccccccceEEecCCeEEEEEecCCCC
Q 002209 188 GAKLNFVTWSQDGKHLAFSIRIDAEDSSSSKLRVWVADVDTGKARPLFQSPDIYLNAIFDNFVWVNNSTLLVCTIPLLRG 267 (953)
Q Consensus 188 ~~~~~~~~wSPDG~~laf~~~~~~~~~~~~~~~l~~~d~~~g~~~~lt~~~~~~~~~~~~~~~wspDg~~l~~~~~~~~~ 267 (953)
+ .+....|-|.++.|+... .++.|-++|+.+......+...++. +.+++-+||++.++....+..
T Consensus 413 ~-y~l~~~Fvpgd~~Iv~G~---------k~Gel~vfdlaS~~l~Eti~AHdga----IWsi~~~pD~~g~vT~saDkt- 477 (888)
T KOG0306|consen 413 G-YILASKFVPGDRYIVLGT---------KNGELQVFDLASASLVETIRAHDGA----IWSISLSPDNKGFVTGSADKT- 477 (888)
T ss_pred c-cEEEEEecCCCceEEEec---------cCCceEEEEeehhhhhhhhhccccc----eeeeeecCCCCceEEecCCcE-
Confidence 3 677788999999888743 3556667777776544333322322 667888899998886622211
Q ss_pred CCCCCCCCCCCCceeecCCCccccchhhhhhcCCcchhhhhhhhccceEEEEEc----CCce---------eEeCCCCcc
Q 002209 268 DPPKKPLVPLGPKMQSNEKRDIIQVRTFQDLLKDEYDEDLFDYYATTQLVLVSL----DGTV---------KEIGPPAVY 334 (953)
Q Consensus 268 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~l~~~~~----~g~~---------~~l~~~~~~ 334 (953)
-.+|-.-+ .|.. +.|.-...+
T Consensus 478 ----------------------------------------------VkfWdf~l~~~~~gt~~k~lsl~~~rtLel~ddv 511 (888)
T KOG0306|consen 478 ----------------------------------------------VKFWDFKLVVSVPGTQKKVLSLKHTRTLELEDDV 511 (888)
T ss_pred ----------------------------------------------EEEEeEEEEeccCcccceeeeeccceEEeccccE
Confidence 11222111 1221 112222567
Q ss_pred cccccCCCCcEEEEEEecCCccccccCCCCCcceEEEeccCceE-EEeccCCCcccCCccccccccCccceeeccCCCCc
Q 002209 335 TSLDPSPDEKYILISSIHRPYSFIVPCGRFPRQVGVWTTDGIFV-RELCDLPLAEDIPIAFNSVRKGMRSINWRSDKPST 413 (953)
Q Consensus 335 ~~~~~SpDG~~l~~~~~~~~~~~~~~~~~~~~~i~~~d~~g~~~-~~l~~~~~~~~~p~~~~~~~~~~~~~~wspDg~~i 413 (953)
-.+.+||||++|+++-.++ ++.++-+++=.. -.|..+.. -+..+..|||++.|
T Consensus 512 L~v~~Spdgk~LaVsLLdn-------------TVkVyflDtlKFflsLYGHkL-------------PV~smDIS~DSkli 565 (888)
T KOG0306|consen 512 LCVSVSPDGKLLAVSLLDN-------------TVKVYFLDTLKFFLSLYGHKL-------------PVLSMDISPDSKLI 565 (888)
T ss_pred EEEEEcCCCcEEEEEeccC-------------eEEEEEecceeeeeeeccccc-------------ceeEEeccCCcCeE
Confidence 7889999999999987554 677777764322 23444322 23678899999976
Q ss_pred eEEEEeccCCCcccccccCCeEEEEecCCCCCCCceEEeecccccCCeeeccCCceEEEEEecccCceEEEEEcCCCCCC
Q 002209 414 LYWAETQDGGDAKVEVTPRDIIYTQQAEPVQGEGPEILHKLDLRYGGISWCDDSLALVYESWYKTRRTRTWVISPGSKDV 493 (953)
Q Consensus 414 ~~~~~~~~~~~~~~~~~~~~~l~~~d~~~~~g~~~~~l~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~l~~~d~~~~~~ 493 (953)
+-. +....+-+|.+ .=|.-.+-+..++..+.++.|-|+ ..++|+...++ .+..+|.+. .
T Consensus 566 vTg-------------SADKnVKiWGL--dFGDCHKS~fAHdDSvm~V~F~P~-~~~FFt~gKD~---kvKqWDg~k--F 624 (888)
T KOG0306|consen 566 VTG-------------SADKNVKIWGL--DFGDCHKSFFAHDDSVMSVQFLPK-THLFFTCGKDG---KVKQWDGEK--F 624 (888)
T ss_pred Eec-------------cCCCceEEecc--ccchhhhhhhcccCceeEEEEccc-ceeEEEecCcc---eEEeechhh--h
Confidence 654 33334545543 114445667788888899999995 45666665442 465666444 2
Q ss_pred CcEEeecCCCccccCCCCCCCeEeccCCCEEEEEeee
Q 002209 494 APRILFDRSSEDVYSDPGSPMMRRTSTGTYVIAKIKK 530 (953)
Q Consensus 494 ~~~~~~~~~~~~~~~~~~~p~~~~SpDG~~l~~~~~~ 530 (953)
+..+..+.+...++. ++.+|+|.+++..+.+
T Consensus 625 e~iq~L~~H~~ev~c------Lav~~~G~~vvs~shD 655 (888)
T KOG0306|consen 625 EEIQKLDGHHSEVWC------LAVSPNGSFVVSSSHD 655 (888)
T ss_pred hhheeeccchheeee------eEEcCCCCeEEeccCC
Confidence 334445566666665 7889999999877643
No 231
>KOG0282 consensus mRNA splicing factor [Function unknown]
Probab=98.61 E-value=3.3e-07 Score=96.71 Aligned_cols=237 Identities=14% Similarity=0.138 Sum_probs=144.7
Q ss_pred CCCCCCceecCCCCEEEEEecCCCCCccccccccceeceEEecCCCCCCcceeeeeceEEEEccCCCCCCceeeeecCCC
Q 002209 108 APPLPALSFSPQRDKILFLKRRALPPLEELARPEEKLAGLRIDGKCNTRSRMSFYTGIGIHQLFPDGKLGQEIEIQGFPD 187 (953)
Q Consensus 108 ~~~~~~~~~SPDG~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~i~~~~~~g~~~~~~~l~~~~~ 187 (953)
...+..++||.+|..++.++.+ ..|.+||+++ |+. +..+..
T Consensus 258 ~k~Vrd~~~s~~g~~fLS~sfD---------------------------------~~lKlwDtET----G~~--~~~f~~ 298 (503)
T KOG0282|consen 258 RKPVRDASFNNCGTSFLSASFD---------------------------------RFLKLWDTET----GQV--LSRFHL 298 (503)
T ss_pred hhhhhhhhccccCCeeeeeecc---------------------------------eeeeeecccc----ceE--EEEEec
Confidence 3457788899999988887765 3678999865 332 222444
Q ss_pred CCcccceEeccCCCeEEEEEeeccccCCCCcceEEEEECCCCceeecccCCCccccccccceEEecCCeEEEEEecCCCC
Q 002209 188 GAKLNFVTWSQDGKHLAFSIRIDAEDSSSSKLRVWVADVDTGKARPLFQSPDIYLNAIFDNFVWVNNSTLLVCTIPLLRG 267 (953)
Q Consensus 188 ~~~~~~~~wSPDG~~laf~~~~~~~~~~~~~~~l~~~d~~~g~~~~lt~~~~~~~~~~~~~~~wspDg~~l~~~~~~~~~ 267 (953)
+.....+.+.||+..+.++.. .+..|..+|..+|+..+-....-.. +..+.|-++|++++.++.+
T Consensus 299 ~~~~~cvkf~pd~~n~fl~G~--------sd~ki~~wDiRs~kvvqeYd~hLg~----i~~i~F~~~g~rFissSDd--- 363 (503)
T KOG0282|consen 299 DKVPTCVKFHPDNQNIFLVGG--------SDKKIRQWDIRSGKVVQEYDRHLGA----ILDITFVDEGRRFISSSDD--- 363 (503)
T ss_pred CCCceeeecCCCCCcEEEEec--------CCCcEEEEeccchHHHHHHHhhhhh----eeeeEEccCCceEeeeccC---
Confidence 457788999999988877542 4678899999999865543333222 6678899999998866221
Q ss_pred CCCCCCCCCCCCceeecCCCccccchhhhhhcCCcchhhhhhhhccceEEEEEcCCceeEeCCCCcc--cccccCCCCcE
Q 002209 268 DPPKKPLVPLGPKMQSNEKRDIIQVRTFQDLLKDEYDEDLFDYYATTQLVLVSLDGTVKEIGPPAVY--TSLDPSPDEKY 345 (953)
Q Consensus 268 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~l~~~~~~g~~~~l~~~~~~--~~~~~SpDG~~ 345 (953)
..-.||-+...-..+.+.....+ ..+..+|.|++
T Consensus 364 --------------------------------------------ks~riWe~~~~v~ik~i~~~~~hsmP~~~~~P~~~~ 399 (503)
T KOG0282|consen 364 --------------------------------------------KSVRIWENRIPVPIKNIADPEMHTMPCLTLHPNGKW 399 (503)
T ss_pred --------------------------------------------ccEEEEEcCCCccchhhcchhhccCcceecCCCCCe
Confidence 11223333222223333333222 35678999999
Q ss_pred EEEEEecCCccccccCCCCCcceEEEeccCceEEEeccCCCcccCCccccccccCccceeeccCCCCceEEEEeccCCCc
Q 002209 346 ILISSIHRPYSFIVPCGRFPRQVGVWTTDGIFVRELCDLPLAEDIPIAFNSVRKGMRSINWRSDKPSTLYWAETQDGGDA 425 (953)
Q Consensus 346 l~~~~~~~~~~~~~~~~~~~~~i~~~d~~g~~~~~l~~~~~~~~~p~~~~~~~~~~~~~~wspDg~~i~~~~~~~~~~~~ 425 (953)
++..+.++ .|.++.+.-.. +++.....+. ..+.+..-.+.|||||+.|++.
T Consensus 400 ~~aQs~dN-------------~i~ifs~~~~~--r~nkkK~feG-----h~vaGys~~v~fSpDG~~l~SG--------- 450 (503)
T KOG0282|consen 400 FAAQSMDN-------------YIAIFSTVPPF--RLNKKKRFEG-----HSVAGYSCQVDFSPDGRTLCSG--------- 450 (503)
T ss_pred ehhhccCc-------------eEEEEeccccc--ccCHhhhhcc-----eeccCceeeEEEcCCCCeEEee---------
Confidence 99888654 56565543110 1111000000 0111222468999999988887
Q ss_pred ccccccCCeEEEEecCCCCCCCceEEeecccccCCeeeccCCce-EEEEEecc
Q 002209 426 KVEVTPRDIIYTQQAEPVQGEGPEILHKLDLRYGGISWCDDSLA-LVYESWYK 477 (953)
Q Consensus 426 ~~~~~~~~~l~~~d~~~~~g~~~~~l~~~~~~~~~~~~SpDg~~-l~~~~~~~ 477 (953)
+..+.++.||- .+......+..++..+.++.|.|-... ++..++.+
T Consensus 451 ----dsdG~v~~wdw--kt~kl~~~lkah~~~ci~v~wHP~e~Skvat~~w~G 497 (503)
T KOG0282|consen 451 ----DSDGKVNFWDW--KTTKLVSKLKAHDQPCIGVDWHPVEPSKVATCGWDG 497 (503)
T ss_pred ----cCCccEEEeec--hhhhhhhccccCCcceEEEEecCCCcceeEecccCc
Confidence 66778999985 222233445566677788999998665 44444443
No 232
>KOG2139 consensus WD40 repeat protein [General function prediction only]
Probab=98.57 E-value=2.3e-06 Score=87.22 Aligned_cols=110 Identities=19% Similarity=0.214 Sum_probs=76.0
Q ss_pred CCCCcccceEeccCCCeEEEEEeeccccCCCCcceEEEEECCCCceeecccCCCccccccccceEEecCCeEEEEEecCC
Q 002209 186 PDGAKLNFVTWSQDGKHLAFSIRIDAEDSSSSKLRVWVADVDTGKARPLFQSPDIYLNAIFDNFVWVNNSTLLVCTIPLL 265 (953)
Q Consensus 186 ~~~~~~~~~~wSPDG~~laf~~~~~~~~~~~~~~~l~~~d~~~g~~~~lt~~~~~~~~~~~~~~~wspDg~~l~~~~~~~ 265 (953)
+....+....|.+||..++..+- +...|.++|+++|...+|.....++ +..+.|||||.+|+.++.+
T Consensus 193 pgh~pVtsmqwn~dgt~l~tAS~--------gsssi~iWdpdtg~~~pL~~~glgg----~slLkwSPdgd~lfaAt~d- 259 (445)
T KOG2139|consen 193 PGHNPVTSMQWNEDGTILVTASF--------GSSSIMIWDPDTGQKIPLIPKGLGG----FSLLKWSPDGDVLFAATCD- 259 (445)
T ss_pred CCCceeeEEEEcCCCCEEeeccc--------CcceEEEEcCCCCCcccccccCCCc----eeeEEEcCCCCEEEEeccc-
Confidence 33347889999999998887542 4678889999999888886433333 7789999999999977221
Q ss_pred CCCCCCCCCCCCCCceeecCCCccccchhhhhhcCCcchhhhhhhhccceEEEEEcC-CceeEeCCCCcccccccCCCCc
Q 002209 266 RGDPPKKPLVPLGPKMQSNEKRDIIQVRTFQDLLKDEYDEDLFDYYATTQLVLVSLD-GTVKEIGPPAVYTSLDPSPDEK 344 (953)
Q Consensus 266 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~l~~~~~~-g~~~~l~~~~~~~~~~~SpDG~ 344 (953)
+.-.||.-+-. -+.+.+...+.+....|||+|+
T Consensus 260 ----------------------------------------------avfrlw~e~q~wt~erw~lgsgrvqtacWspcGs 293 (445)
T KOG2139|consen 260 ----------------------------------------------AVFRLWQENQSWTKERWILGSGRVQTACWSPCGS 293 (445)
T ss_pred ----------------------------------------------ceeeeehhcccceecceeccCCceeeeeecCCCC
Confidence 11123322111 1333444446888999999999
Q ss_pred EEEEEEecCC
Q 002209 345 YILISSIHRP 354 (953)
Q Consensus 345 ~l~~~~~~~~ 354 (953)
+|+|+....+
T Consensus 294 fLLf~~sgsp 303 (445)
T KOG2139|consen 294 FLLFACSGSP 303 (445)
T ss_pred EEEEEEcCCc
Confidence 9999986654
No 233
>COG2819 Predicted hydrolase of the alpha/beta superfamily [General function prediction only]
Probab=98.57 E-value=3.5e-06 Score=84.78 Aligned_cols=111 Identities=23% Similarity=0.260 Sum_probs=71.8
Q ss_pred HHHcCCCCCCcEEEEEeChHHHHHHHHHHhCCCcccEEEEcccCCCCCCCCcCcccccchhhhhHHHHHhcCcccccCCC
Q 002209 750 VVRRGVAHPSKIAVGGHSYGAFMTANLLAHAPHLFCCGIARSGAYNRTLTPFGFQNEDRTLWEATSTYVEMSPFMSANKL 829 (953)
Q Consensus 750 l~~~~~~d~~~i~l~G~S~GG~~a~~~a~~~p~~~~a~v~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~sp~~~~~~i 829 (953)
+.+...++.++.+|+|||+||.+++.++..+|+.|...++++|... |.+...+....-.... .
T Consensus 128 Ie~~y~~~~~~~~i~GhSlGGLfvl~aLL~~p~~F~~y~~~SPSlW---------------w~n~~~l~~~~~~~~~-~- 190 (264)
T COG2819 128 IEARYRTNSERTAIIGHSLGGLFVLFALLTYPDCFGRYGLISPSLW---------------WHNEAILREIESLKLL-K- 190 (264)
T ss_pred HhcccccCcccceeeeecchhHHHHHHHhcCcchhceeeeecchhh---------------hCCHHHhccccccccC-C-
Confidence 4445778999999999999999999999999999999999998532 2233333332222222 2
Q ss_pred CCcEEEE--EeCCCCCCCCc----hHHHHHHHHHHHh-CCCcEEEEEeCCCCccC
Q 002209 830 KKPILLV--HGEEDNNSGTL----TMQSDRFFNALKG-HGALCRLVILPFESHGY 877 (953)
Q Consensus 830 ~~P~Li~--~G~~D~~v~~~----~~~~~~~~~~l~~-~g~~~~~~~~~~~~H~~ 877 (953)
..++++. .|+.|.....- ..++.+....+++ .|....+..+|+++|+-
T Consensus 191 ~~~i~l~iG~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~f~~~~~~~H~~ 245 (264)
T COG2819 191 TKRICLYIGSGELDSSRSIRMAENKQEAAELSSLLEKRTGARLVFQEEPLEHHGS 245 (264)
T ss_pred CcceEEEecccccCcchhhhhhhHHHHHHHHHHHHhhccCCceEecccccccccc
Confidence 3444444 44444421100 2334444455555 77888899999888864
No 234
>PRK10115 protease 2; Provisional
Probab=98.57 E-value=1.2e-05 Score=96.02 Aligned_cols=109 Identities=13% Similarity=0.195 Sum_probs=68.6
Q ss_pred CCCceecCCCCEEEEEecCCCCCccccccccceeceEEecCCCCCCcceeeeeceEEEEccCCCCCCceeeeecCCCCCc
Q 002209 111 LPALSFSPQRDKILFLKRRALPPLEELARPEEKLAGLRIDGKCNTRSRMSFYTGIGIHQLFPDGKLGQEIEIQGFPDGAK 190 (953)
Q Consensus 111 ~~~~~~SPDG~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~i~~~~~~g~~~~~~~l~~~~~~~~ 190 (953)
+....+||||++|||+.+. .++... +|++.|+.+ |..- ...+. ..
T Consensus 129 l~~~~~Spdg~~la~~~d~----------------------~G~E~~------~l~v~d~~t-g~~l-~~~i~---~~-- 173 (686)
T PRK10115 129 LGGMAITPDNTIMALAEDF----------------------LSRRQY------GIRFRNLET-GNWY-PELLD---NV-- 173 (686)
T ss_pred EeEEEECCCCCEEEEEecC----------------------CCcEEE------EEEEEECCC-CCCC-Ccccc---Cc--
Confidence 4567899999999999874 233333 789999853 3110 22222 11
Q ss_pred ccceEeccCCCeEEEEEeeccccCCCCcceEEEEECCCC--ceeecccCCCccccccccceEEec-CCeEEEEE
Q 002209 191 LNFVTWSQDGKHLAFSIRIDAEDSSSSKLRVWVADVDTG--KARPLFQSPDIYLNAIFDNFVWVN-NSTLLVCT 261 (953)
Q Consensus 191 ~~~~~wSPDG~~laf~~~~~~~~~~~~~~~l~~~d~~~g--~~~~lt~~~~~~~~~~~~~~~wsp-Dg~~l~~~ 261 (953)
.....|++||+.|+|+.... ......+||++++.++ +.+.|....... .....|.+ |++.+++.
T Consensus 174 ~~~~~w~~D~~~~~y~~~~~---~~~~~~~v~~h~lgt~~~~d~lv~~e~~~~----~~~~~~~s~d~~~l~i~ 240 (686)
T PRK10115 174 EPSFVWANDSWTFYYVRKHP---VTLLPYQVWRHTIGTPASQDELVYEEKDDT----FYVSLHKTTSKHYVVIH 240 (686)
T ss_pred ceEEEEeeCCCEEEEEEecC---CCCCCCEEEEEECCCChhHCeEEEeeCCCC----EEEEEEEcCCCCEEEEE
Confidence 24589999999999987622 1123478999999988 455565533321 22233444 88877754
No 235
>PF02239 Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO_B 1HZU_A 1N15_B 1N50_A 1GJQ_A 1BL9_B 1NIR_B 1N90_B 1HZV_A 1AOQ_A ....
Probab=98.56 E-value=9.3e-05 Score=81.62 Aligned_cols=185 Identities=15% Similarity=0.107 Sum_probs=102.1
Q ss_pred cceEEEEECCCCceeecccCCCccccccccceEEecCCeEEEEEecCCCCCCCCCCCCCCCCceeecCCCccccchhhhh
Q 002209 218 KLRVWVADVDTGKARPLFQSPDIYLNAIFDNFVWVNNSTLLVCTIPLLRGDPPKKPLVPLGPKMQSNEKRDIIQVRTFQD 297 (953)
Q Consensus 218 ~~~l~~~d~~~g~~~~lt~~~~~~~~~~~~~~~wspDg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 297 (953)
...|.++|.++.+...-....... .....++|||+++++..
T Consensus 15 ~~~v~viD~~t~~~~~~i~~~~~~----h~~~~~s~Dgr~~yv~~----------------------------------- 55 (369)
T PF02239_consen 15 SGSVAVIDGATNKVVARIPTGGAP----HAGLKFSPDGRYLYVAN----------------------------------- 55 (369)
T ss_dssp GTEEEEEETTT-SEEEEEE-STTE----EEEEE-TT-SSEEEEEE-----------------------------------
T ss_pred CCEEEEEECCCCeEEEEEcCCCCc----eeEEEecCCCCEEEEEc-----------------------------------
Confidence 679999999887754433322211 23567899999988761
Q ss_pred hcCCcchhhhhhhhccceEEEEEc-CCc-eeEeCCCCcccccccCCCCcEEEEEEecCCccccccCCCCCcceEEEeccC
Q 002209 298 LLKDEYDEDLFDYYATTQLVLVSL-DGT-VKEIGPPAVYTSLDPSPDEKYILISSIHRPYSFIVPCGRFPRQVGVWTTDG 375 (953)
Q Consensus 298 ~~~~~~d~~~~~~~~~~~l~~~~~-~g~-~~~l~~~~~~~~~~~SpDG~~l~~~~~~~~~~~~~~~~~~~~~i~~~d~~g 375 (953)
..+.|.++|+ +++ .+.+..+....++++|||||+|+.+... ++++.++|..+
T Consensus 56 --------------rdg~vsviD~~~~~~v~~i~~G~~~~~i~~s~DG~~~~v~n~~------------~~~v~v~D~~t 109 (369)
T PF02239_consen 56 --------------RDGTVSVIDLATGKVVATIKVGGNPRGIAVSPDGKYVYVANYE------------PGTVSVIDAET 109 (369)
T ss_dssp --------------TTSEEEEEETTSSSEEEEEE-SSEEEEEEE--TTTEEEEEEEE------------TTEEEEEETTT
T ss_pred --------------CCCeEEEEECCcccEEEEEecCCCcceEEEcCCCCEEEEEecC------------CCceeEecccc
Confidence 1246779999 664 4555555667789999999999877633 34888999876
Q ss_pred ce-EEEeccCCCcccCCccccccccCccceeeccCCCCceEEEEeccCCCcccccccCCeEEEEecCCCCCCCceEEe--
Q 002209 376 IF-VRELCDLPLAEDIPIAFNSVRKGMRSINWRSDKPSTLYWAETQDGGDAKVEVTPRDIIYTQQAEPVQGEGPEILH-- 452 (953)
Q Consensus 376 ~~-~~~l~~~~~~~~~p~~~~~~~~~~~~~~wspDg~~i~~~~~~~~~~~~~~~~~~~~~l~~~d~~~~~g~~~~~l~-- 452 (953)
.+ .+.+......... ...++..+.-+|++...++. ....++++++|. .+. +.....
T Consensus 110 le~v~~I~~~~~~~~~------~~~Rv~aIv~s~~~~~fVv~------------lkd~~~I~vVdy--~d~-~~~~~~~i 168 (369)
T PF02239_consen 110 LEPVKTIPTGGMPVDG------PESRVAAIVASPGRPEFVVN------------LKDTGEIWVVDY--SDP-KNLKVTTI 168 (369)
T ss_dssp --EEEEEE--EE-TTT------S---EEEEEE-SSSSEEEEE------------ETTTTEEEEEET--TTS-SCEEEEEE
T ss_pred ccceeecccccccccc------cCCCceeEEecCCCCEEEEE------------EccCCeEEEEEe--ccc-cccceeee
Confidence 44 3444432111100 01122345667776644333 133568999986 222 222221
Q ss_pred ecccccCCeeeccCCceEEEEEecccCceEEEEEcCCCC
Q 002209 453 KLDLRYGGISWCDDSLALVYESWYKTRRTRTWVISPGSK 491 (953)
Q Consensus 453 ~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~l~~~d~~~~ 491 (953)
..........|+|||++++.+.+... .+-++|+.++
T Consensus 169 ~~g~~~~D~~~dpdgry~~va~~~sn---~i~viD~~~~ 204 (369)
T PF02239_consen 169 KVGRFPHDGGFDPDGRYFLVAANGSN---KIAVIDTKTG 204 (369)
T ss_dssp E--TTEEEEEE-TTSSEEEEEEGGGT---EEEEEETTTT
T ss_pred cccccccccccCcccceeeecccccc---eeEEEeeccc
Confidence 12222345789999999877655432 6777777664
No 236
>KOG1274 consensus WD40 repeat protein [General function prediction only]
Probab=98.55 E-value=3.8e-06 Score=95.67 Aligned_cols=165 Identities=14% Similarity=0.086 Sum_probs=98.8
Q ss_pred eEEEEEc-CCcee-EeCCC-CcccccccCCCCcEEEEEEecCCccccccCCCCCcceEEEeccC-ceEEEeccCCCcccC
Q 002209 315 QLVLVSL-DGTVK-EIGPP-AVYTSLDPSPDEKYILISSIHRPYSFIVPCGRFPRQVGVWTTDG-IFVRELCDLPLAEDI 390 (953)
Q Consensus 315 ~l~~~~~-~g~~~-~l~~~-~~~~~~~~SpDG~~l~~~~~~~~~~~~~~~~~~~~~i~~~d~~g-~~~~~l~~~~~~~~~ 390 (953)
.+.+|.. +++.. .|+.. -..+..+++.+|+++|+.+.+. .|.+.+++. +..+.+..+.
T Consensus 77 tv~~y~fps~~~~~iL~Rftlp~r~~~v~g~g~~iaagsdD~-------------~vK~~~~~D~s~~~~lrgh~----- 138 (933)
T KOG1274|consen 77 TVLRYKFPSGEEDTILARFTLPIRDLAVSGSGKMIAAGSDDT-------------AVKLLNLDDSSQEKVLRGHD----- 138 (933)
T ss_pred eEEEeeCCCCCccceeeeeeccceEEEEecCCcEEEeecCce-------------eEEEEeccccchheeecccC-----
Confidence 3445555 44333 22222 4566789999999999998554 677777763 3444443332
Q ss_pred CccccccccCccceeeccCCCCceEEEEeccCCCcccccccCCeEEEEecCCCCCCCceEEeec--------ccccCCee
Q 002209 391 PIAFNSVRKGMRSINWRSDKPSTLYWAETQDGGDAKVEVTPRDIIYTQQAEPVQGEGPEILHKL--------DLRYGGIS 462 (953)
Q Consensus 391 p~~~~~~~~~~~~~~wspDg~~i~~~~~~~~~~~~~~~~~~~~~l~~~d~~~~~g~~~~~l~~~--------~~~~~~~~ 462 (953)
.-+..+.+.|.|+.+|.. +..+.|++|++ .++.....++.. ..-+..++
T Consensus 139 --------apVl~l~~~p~~~fLAvs-------------s~dG~v~iw~~--~~~~~~~tl~~v~k~n~~~~s~i~~~~a 195 (933)
T KOG1274|consen 139 --------APVLQLSYDPKGNFLAVS-------------SCDGKVQIWDL--QDGILSKTLTGVDKDNEFILSRICTRLA 195 (933)
T ss_pred --------CceeeeeEcCCCCEEEEE-------------ecCceEEEEEc--ccchhhhhcccCCccccccccceeeeee
Confidence 233578899999987776 55678999996 222222223221 11234589
Q ss_pred eccCCceEEEEEecccCceEEEEEcCCCCCCCcEEeecCCCccccCCCCCCCeEeccCCCEEEEEeee
Q 002209 463 WCDDSLALVYESWYKTRRTRTWVISPGSKDVAPRILFDRSSEDVYSDPGSPMMRRTSTGTYVIAKIKK 530 (953)
Q Consensus 463 ~SpDg~~l~~~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~SpDG~~l~~~~~~ 530 (953)
|+|+|..+++..-++ .+.+++..+.+.. ..+-+......+.. ++|||.|++||....+
T Consensus 196 W~Pk~g~la~~~~d~----~Vkvy~r~~we~~-f~Lr~~~~ss~~~~-----~~wsPnG~YiAAs~~~ 253 (933)
T KOG1274|consen 196 WHPKGGTLAVPPVDN----TVKVYSRKGWELQ-FKLRDKLSSSKFSD-----LQWSPNGKYIAASTLD 253 (933)
T ss_pred ecCCCCeEEeeccCC----eEEEEccCCceeh-eeecccccccceEE-----EEEcCCCcEEeeeccC
Confidence 999977766654443 4566666665322 22222222222222 8999999999988753
No 237
>PF02273 Acyl_transf_2: Acyl transferase; InterPro: IPR003157 LuxD proteins are bacterial acyl transferases. Together with an acyl-protein synthetase (LuxE) and reductase (LuxC), they form a multienzyme complex. This complex channels activated fatty acids into the aldehyde substrate for the luciferase-catalyzed bacterial bioluminescence reaction [, ]. ; GO: 0016746 transferase activity, transferring acyl groups, 0006631 fatty acid metabolic process; PDB: 1THT_B.
Probab=98.54 E-value=3.3e-06 Score=82.25 Aligned_cols=207 Identities=15% Similarity=0.186 Sum_probs=109.7
Q ss_pred EEcCCCcEEEEEEEcCCCCCCCCCCCccEEEEeCCCCCcCcCCCCcccCCCCCCCCccchHHHHHHHcCcEEEEcCCCCC
Q 002209 644 YQRKDGVQLSATLYLPPGYDPSKDGPLPCLFWSYPGEFKSKDAAGQVRGSPNEFPRIGSTSVLLWLARGFAILGGPTTPI 723 (953)
Q Consensus 644 ~~~~dg~~~~~~l~~P~~~~~~~~~~~P~vv~~hGg~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~G~~V~~~~~~~~ 723 (953)
+.-.+|.+|..|--+|..-.+.+ .|+||+.-|.. . -.......+.+|+.+||.|+.+|....
T Consensus 7 i~~~~~~~I~vwet~P~~~~~~~---~~tiliA~Gf~-r--------------rmdh~agLA~YL~~NGFhViRyDsl~H 68 (294)
T PF02273_consen 7 IRLEDGRQIRVWETRPKNNEPKR---NNTILIAPGFA-R--------------RMDHFAGLAEYLSANGFHVIRYDSLNH 68 (294)
T ss_dssp EEETTTEEEEEEEE---TTS------S-EEEEE-TT--G--------------GGGGGHHHHHHHHTTT--EEEE---B-
T ss_pred eEcCCCCEEEEeccCCCCCCccc---CCeEEEecchh-H--------------HHHHHHHHHHHHhhCCeEEEecccccc
Confidence 34468999999999998744433 78999887731 1 111223457789999999999666544
Q ss_pred CCCCChhhhhhhHHHHHHHHHHHHHHHHHcCCCCCCcEEEEEeChHHHHHHHHHHhCCCcccEEEEcccCCCCCCC----
Q 002209 724 IGEGDEEANDRFVEQLVACAEAAVEEVVRRGVAHPSKIAVGGHSYGAFMTANLLAHAPHLFCCGIARSGAYNRTLT---- 799 (953)
Q Consensus 724 ~G~G~~~~~~~~~~~~~~D~~~~~~~l~~~~~~d~~~i~l~G~S~GG~~a~~~a~~~p~~~~a~v~~~~~~d~~~~---- 799 (953)
.|.......+-.+.....|+..+++||.+.+ ..+++++--|.-|-+|..+++.- + ..-+|...|++|...+
T Consensus 69 vGlSsG~I~eftms~g~~sL~~V~dwl~~~g---~~~~GLIAaSLSaRIAy~Va~~i-~-lsfLitaVGVVnlr~TLe~a 143 (294)
T PF02273_consen 69 VGLSSGDINEFTMSIGKASLLTVIDWLATRG---IRRIGLIAASLSARIAYEVAADI-N-LSFLITAVGVVNLRDTLEKA 143 (294)
T ss_dssp ------------HHHHHHHHHHHHHHHHHTT------EEEEEETTHHHHHHHHTTTS----SEEEEES--S-HHHHHHHH
T ss_pred ccCCCCChhhcchHHhHHHHHHHHHHHHhcC---CCcchhhhhhhhHHHHHHHhhcc-C-cceEEEEeeeeeHHHHHHHH
Confidence 4443322334446678899999999999776 36899999999999999999854 4 6666777788773221
Q ss_pred ---C-cCcc-----cc----c----chhhhhHHHHH-hc----CcccccCCCCCcEEEEEeCCCCCCCCchHHHHHHHHH
Q 002209 800 ---P-FGFQ-----NE----D----RTLWEATSTYV-EM----SPFMSANKLKKPILLVHGEEDNNSGTLTMQSDRFFNA 857 (953)
Q Consensus 800 ---~-~~~~-----~~----~----~~~~~~~~~~~-~~----sp~~~~~~i~~P~Li~~G~~D~~v~~~~~~~~~~~~~ 857 (953)
+ ..++ .. . ...|- .+.++ .+ |.+..++++.+|++.+++.+|.-|. ..+..++...
T Consensus 144 l~~Dyl~~~i~~lp~dldfeGh~l~~~vFv-~dc~e~~w~~l~ST~~~~k~l~iP~iaF~A~~D~WV~--q~eV~~~~~~ 220 (294)
T PF02273_consen 144 LGYDYLQLPIEQLPEDLDFEGHNLGAEVFV-TDCFEHGWDDLDSTINDMKRLSIPFIAFTANDDDWVK--QSEVEELLDN 220 (294)
T ss_dssp HSS-GGGS-GGG--SEEEETTEEEEHHHHH-HHHHHTT-SSHHHHHHHHTT--S-EEEEEETT-TTS---HHHHHHHHTT
T ss_pred hccchhhcchhhCCCcccccccccchHHHH-HHHHHcCCccchhHHHHHhhCCCCEEEEEeCCCcccc--HHHHHHHHHh
Confidence 0 0000 00 0 00000 00010 11 3345678889999999999998876 6666666554
Q ss_pred HHhCCCcEEEEEeCCCCccCC
Q 002209 858 LKGHGALCRLVILPFESHGYA 878 (953)
Q Consensus 858 l~~~g~~~~~~~~~~~~H~~~ 878 (953)
+.. ..+++..++|..|.+.
T Consensus 221 ~~s--~~~klysl~Gs~HdL~ 239 (294)
T PF02273_consen 221 INS--NKCKLYSLPGSSHDLG 239 (294)
T ss_dssp -TT----EEEEEETT-SS-TT
T ss_pred cCC--CceeEEEecCccchhh
Confidence 433 3588999999999884
No 238
>KOG2382 consensus Predicted alpha/beta hydrolase [General function prediction only]
Probab=98.49 E-value=2.9e-06 Score=87.70 Aligned_cols=203 Identities=14% Similarity=0.118 Sum_probs=118.5
Q ss_pred CCccEEEEeCCCCCcCcCCCCcccCCCCCCCCccchHHHHHHH-cCcEEEEcCCCCCCCCCChhhhh-hhHHHHHHHHHH
Q 002209 668 GPLPCLFWSYPGEFKSKDAAGQVRGSPNEFPRIGSTSVLLWLA-RGFAILGGPTTPIIGEGDEEAND-RFVEQLVACAEA 745 (953)
Q Consensus 668 ~~~P~vv~~hGg~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~-~G~~V~~~~~~~~~G~G~~~~~~-~~~~~~~~D~~~ 745 (953)
.+.|.++++||-. |....|. .....|+. .|--|+..|. +-+|.+..-. .....+.+|+..
T Consensus 50 ~~~Pp~i~lHGl~-----------GS~~Nw~----sv~k~Ls~~l~~~v~~vd~---RnHG~Sp~~~~h~~~~ma~dv~~ 111 (315)
T KOG2382|consen 50 ERAPPAIILHGLL-----------GSKENWR----SVAKNLSRKLGRDVYAVDV---RNHGSSPKITVHNYEAMAEDVKL 111 (315)
T ss_pred CCCCceEEecccc-----------cCCCCHH----HHHHHhcccccCceEEEec---ccCCCCccccccCHHHHHHHHHH
Confidence 3478899999931 1111221 22334443 3556666333 4455553321 225778888888
Q ss_pred HHHHHHHcCCCCCCcEEEEEeChHH-HHHHHHHHhCCCcccEEEEc--cc-CCCCCC------------CCcC-------
Q 002209 746 AVEEVVRRGVAHPSKIAVGGHSYGA-FMTANLLAHAPHLFCCGIAR--SG-AYNRTL------------TPFG------- 802 (953)
Q Consensus 746 ~~~~l~~~~~~d~~~i~l~G~S~GG-~~a~~~a~~~p~~~~a~v~~--~~-~~d~~~------------~~~~------- 802 (953)
.++....... ..++.|+|||||| .+++..+...|+.+.-+|.. +| .+.... .+..
T Consensus 112 Fi~~v~~~~~--~~~~~l~GHsmGG~~~~m~~t~~~p~~~~rliv~D~sP~~~~~~~~e~~e~i~~m~~~d~~~~~~~~r 189 (315)
T KOG2382|consen 112 FIDGVGGSTR--LDPVVLLGHSMGGVKVAMAETLKKPDLIERLIVEDISPGGVGRSYGEYRELIKAMIQLDLSIGVSRGR 189 (315)
T ss_pred HHHHcccccc--cCCceecccCcchHHHHHHHHHhcCcccceeEEEecCCccCCcccchHHHHHHHHHhccccccccccH
Confidence 8888765433 3589999999999 77777778888876555543 23 111000 0000
Q ss_pred -----------------------cc---cccchhhh-----hHHHHHh---cCccccc--CCCCCcEEEEEeCCCCCCCC
Q 002209 803 -----------------------FQ---NEDRTLWE-----ATSTYVE---MSPFMSA--NKLKKPILLVHGEEDNNSGT 846 (953)
Q Consensus 803 -----------------------~~---~~~~~~~~-----~~~~~~~---~sp~~~~--~~i~~P~Li~~G~~D~~v~~ 846 (953)
+. ......|. -.+.+.+ .+.-..+ .-...|+|+++|.++..|+
T Consensus 190 ke~~~~l~~~~~d~~~~~fi~~nl~~~~~~~s~~w~~nl~~i~~~~~~~~~~s~~~~l~~~~~~~pvlfi~g~~S~fv~- 268 (315)
T KOG2382|consen 190 KEALKSLIEVGFDNLVRQFILTNLKKSPSDGSFLWRVNLDSIASLLDEYEILSYWADLEDGPYTGPVLFIKGLQSKFVP- 268 (315)
T ss_pred HHHHHHHHHHhcchHHHHHHHHhcCcCCCCCceEEEeCHHHHHHHHHHHHhhcccccccccccccceeEEecCCCCCcC-
Confidence 00 00000111 0111111 1221111 4457899999999999998
Q ss_pred chHHHHHHHHHHHhCCCcEEEEEeCCCCccCCCcccHHHHHHHHHHHHHHh
Q 002209 847 LTMQSDRFFNALKGHGALCRLVILPFESHGYAARESIMHVLWETDRWLQKY 897 (953)
Q Consensus 847 ~~~~~~~~~~~l~~~g~~~~~~~~~~~~H~~~~~~~~~~~~~~i~~fl~~~ 897 (953)
.++-.++.+.+.. +++++++++||+.. .++.+.+.+-+.+|+.+.
T Consensus 269 -~~~~~~~~~~fp~----~e~~~ld~aGHwVh-~E~P~~~~~~i~~Fl~~~ 313 (315)
T KOG2382|consen 269 -DEHYPRMEKIFPN----VEVHELDEAGHWVH-LEKPEEFIESISEFLEEP 313 (315)
T ss_pred -hhHHHHHHHhccc----hheeecccCCceee-cCCHHHHHHHHHHHhccc
Confidence 5555555444433 79999999999874 678889999999988764
No 239
>PF06433 Me-amine-dh_H: Methylamine dehydrogenase heavy chain (MADH); InterPro: IPR009451 Methylamine dehydrogenase (1.4.99.3 from EC) is a periplasmic quinoprotein found in several methyltrophic bacteria []. It is induced when grown on methylamine as a carbon source MADH and catalyses the oxidative deamination of amines to their corresponding aldehydes. The redox cofactor of this enzyme is tryptophan tryptophylquinone (TTQ). Electrons derived from the oxidation of methylamine are passed to an electron acceptor, which is usually the blue-copper protein amicyanin (IPR002386 from INTERPRO). RCH2NH2 + H2O + acceptor = RCHO + NH3 + reduced acceptor MADH is a hetero-tetramer, comprised of two heavy subunits and two light subunits. The heavy subunit forms a seven-bladed beta-propeller like structure [].; GO: 0030058 amine dehydrogenase activity, 0030416 methylamine metabolic process, 0055114 oxidation-reduction process, 0042597 periplasmic space; PDB: 3RN1_F 3SVW_F 3PXT_F 3L4O_F 3L4M_D 3SJL_F 3PXS_D 3ORV_F 3RMZ_F 3RLM_F ....
Probab=98.49 E-value=5.6e-05 Score=79.15 Aligned_cols=276 Identities=17% Similarity=0.128 Sum_probs=143.4
Q ss_pred hhcCCCCCCceecCCCCEEEEEecCCCCCccccccccceeceEEecCCCCCCcceeeeeceEEEEccCCCCCCceeeeec
Q 002209 105 IVDAPPLPALSFSPQRDKILFLKRRALPPLEELARPEEKLAGLRIDGKCNTRSRMSFYTGIGIHQLFPDGKLGQEIEIQG 184 (953)
Q Consensus 105 ~~~~~~~~~~~~SPDG~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~i~~~~~~g~~~~~~~l~~ 184 (953)
+++.....++.+||||+.++....- ++ +. .+..-..-|-+||..+ +.....|.
T Consensus 32 mi~~g~~~~~~~spdgk~~y~a~T~-------------------~s-R~---~rG~RtDvv~~~D~~T---L~~~~EI~- 84 (342)
T PF06433_consen 32 MIDTGFLGNVALSPDGKTIYVAETF-------------------YS-RG---TRGERTDVVEIWDTQT---LSPTGEIE- 84 (342)
T ss_dssp EEEEESSEEEEE-TTSSEEEEEEEE-------------------EE-ET---TEEEEEEEEEEEETTT---TEEEEEEE-
T ss_pred EeecccCCceeECCCCCEEEEEEEE-------------------Ee-cc---ccccceeEEEEEecCc---CcccceEe-
Confidence 3344455678899999999865541 00 00 1111112356777633 11111221
Q ss_pred CCCC------CcccceEeccCCCeEEEEEeeccccCCCCcceEEEEECCCCceeecccCCCccccccccceEEecCCeEE
Q 002209 185 FPDG------AKLNFVTWSQDGKHLAFSIRIDAEDSSSSKLRVWVADVDTGKARPLFQSPDIYLNAIFDNFVWVNNSTLL 258 (953)
Q Consensus 185 ~~~~------~~~~~~~wSPDG~~laf~~~~~~~~~~~~~~~l~~~d~~~g~~~~lt~~~~~~~~~~~~~~~wspDg~~l 258 (953)
+|.. ........|.|||++++..-.. ...+-++|++.++...-...++ + ...+-+.+++ ..
T Consensus 85 iP~k~R~~~~~~~~~~~ls~dgk~~~V~N~TP-------a~SVtVVDl~~~kvv~ei~~PG-C----~~iyP~~~~~-F~ 151 (342)
T PF06433_consen 85 IPPKPRAQVVPYKNMFALSADGKFLYVQNFTP-------ATSVTVVDLAAKKVVGEIDTPG-C----WLIYPSGNRG-FS 151 (342)
T ss_dssp ETTS-B--BS--GGGEEE-TTSSEEEEEEESS-------SEEEEEEETTTTEEEEEEEGTS-E----EEEEEEETTE-EE
T ss_pred cCCcchheecccccceEEccCCcEEEEEccCC-------CCeEEEEECCCCceeeeecCCC-E----EEEEecCCCc-eE
Confidence 2221 2456678999999999876544 7789999999887654433343 1 1122222322 11
Q ss_pred EEEecCCCCCCCCCCCCCCCCceeecCCCccccchhhhhhcCCcchhhhhhhhccceEEEEEc--CCceeE----eCCC-
Q 002209 259 VCTIPLLRGDPPKKPLVPLGPKMQSNEKRDIIQVRTFQDLLKDEYDEDLFDYYATTQLVLVSL--DGTVKE----IGPP- 331 (953)
Q Consensus 259 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~l~~~~~--~g~~~~----l~~~- 331 (953)
... +.+.+..+.+ +|+..+ +...
T Consensus 152 ~lC--------------------------------------------------~DGsl~~v~Ld~~Gk~~~~~t~~F~~~ 181 (342)
T PF06433_consen 152 MLC--------------------------------------------------GDGSLLTVTLDADGKEAQKSTKVFDPD 181 (342)
T ss_dssp EEE--------------------------------------------------TTSCEEEEEETSTSSEEEEEEEESSTT
T ss_pred EEe--------------------------------------------------cCCceEEEEECCCCCEeEeeccccCCC
Confidence 111 2334445555 454332 1111
Q ss_pred --CcccccccCCCCcEEEEEEecCCccccccCCCCCcceEEEeccCceEEEeccCCCcccCCccccccccCccceeeccC
Q 002209 332 --AVYTSLDPSPDEKYILISSIHRPYSFIVPCGRFPRQVGVWTTDGIFVRELCDLPLAEDIPIAFNSVRKGMRSINWRSD 409 (953)
Q Consensus 332 --~~~~~~~~SpDG~~l~~~~~~~~~~~~~~~~~~~~~i~~~d~~g~~~~~l~~~~~~~~~p~~~~~~~~~~~~~~wspD 409 (953)
..+..++++.++.+++|.+ |.++|+..|+.+...+.................-.+|..-+++.+.
T Consensus 182 ~dp~f~~~~~~~~~~~~~F~S-------------y~G~v~~~dlsg~~~~~~~~~~~~t~~e~~~~WrPGG~Q~~A~~~~ 248 (342)
T PF06433_consen 182 DDPLFEHPAYSRDGGRLYFVS-------------YEGNVYSADLSGDSAKFGKPWSLLTDAEKADGWRPGGWQLIAYHAA 248 (342)
T ss_dssp TS-B-S--EEETTTTEEEEEB-------------TTSEEEEEEETTSSEEEEEEEESS-HHHHHTTEEE-SSS-EEEETT
T ss_pred CcccccccceECCCCeEEEEe-------------cCCEEEEEeccCCcccccCcccccCccccccCcCCcceeeeeeccc
Confidence 2334566777888888887 4559999999877655443322111000001112234445778777
Q ss_pred CCCceEEEEeccCCCcccccccCCeEEEEecCCCCCCCceEEeecccccCCeeeccCCceEEEEEecccCceEEEEEcCC
Q 002209 410 KPSTLYWAETQDGGDAKVEVTPRDIIYTQQAEPVQGEGPEILHKLDLRYGGISWCDDSLALVYESWYKTRRTRTWVISPG 489 (953)
Q Consensus 410 g~~i~~~~~~~~~~~~~~~~~~~~~l~~~d~~~~~g~~~~~l~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~l~~~d~~ 489 (953)
..+++...+.... + .-..+...||++|+ .++....++. .+..+.++..|.|.+-++|+...... .|+++|+.
T Consensus 249 ~~rlyvLMh~g~~--g-sHKdpgteVWv~D~--~t~krv~Ri~-l~~~~~Si~Vsqd~~P~L~~~~~~~~--~l~v~D~~ 320 (342)
T PF06433_consen 249 SGRLYVLMHQGGE--G-SHKDPGTEVWVYDL--KTHKRVARIP-LEHPIDSIAVSQDDKPLLYALSAGDG--TLDVYDAA 320 (342)
T ss_dssp TTEEEEEEEE--T--T--TTS-EEEEEEEET--TTTEEEEEEE-EEEEESEEEEESSSS-EEEEEETTTT--EEEEEETT
T ss_pred cCeEEEEecCCCC--C-CccCCceEEEEEEC--CCCeEEEEEe-CCCccceEEEccCCCcEEEEEcCCCC--eEEEEeCc
Confidence 7666666553322 1 11234558999996 3332233332 23446689999999988887655433 79999998
Q ss_pred CC
Q 002209 490 SK 491 (953)
Q Consensus 490 ~~ 491 (953)
++
T Consensus 321 tG 322 (342)
T PF06433_consen 321 TG 322 (342)
T ss_dssp T-
T ss_pred CC
Confidence 86
No 240
>COG4188 Predicted dienelactone hydrolase [General function prediction only]
Probab=98.48 E-value=4e-07 Score=95.56 Aligned_cols=214 Identities=20% Similarity=0.216 Sum_probs=120.7
Q ss_pred eEEEEEEcC-CCcEEEEEEEcCCCCCC-CCCCCccEEEEeCCC-CCcCcCCCCcccCCCCCCCCccchHHHHHHHcCcEE
Q 002209 639 KELIKYQRK-DGVQLSATLYLPPGYDP-SKDGPLPCLFWSYPG-EFKSKDAAGQVRGSPNEFPRIGSTSVLLWLARGFAI 715 (953)
Q Consensus 639 ~~~~~~~~~-dg~~~~~~l~~P~~~~~-~~~~~~P~vv~~hGg-~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~G~~V 715 (953)
...+++... .+.++...+++|..... -..+++|+|++.||- +. ...+ ...+..|++.||+|
T Consensus 38 ~~~i~~~~~~r~~~~~v~~~~p~~~~~~~~~~~~PlvvlshG~Gs~---------------~~~f-~~~A~~lAs~Gf~V 101 (365)
T COG4188 38 FVTITLNDPQRDRERPVDLRLPQGGTGTVALYLLPLVVLSHGSGSY---------------VTGF-AWLAEHLASYGFVV 101 (365)
T ss_pred EEEEeccCcccCCccccceeccCCCccccccCcCCeEEecCCCCCC---------------ccch-hhhHHHHhhCceEE
Confidence 445555433 35678889999876432 011469999999993 21 1111 13466789999999
Q ss_pred EEcCCCCCCCCCChhh--h-----hhhHHHHHHHHHHHHHHHHHc---C----CCCCCcEEEEEeChHHHHHHHHHHhCC
Q 002209 716 LGGPTTPIIGEGDEEA--N-----DRFVEQLVACAEAAVEEVVRR---G----VAHPSKIAVGGHSYGAFMTANLLAHAP 781 (953)
Q Consensus 716 ~~~~~~~~~G~G~~~~--~-----~~~~~~~~~D~~~~~~~l~~~---~----~~d~~~i~l~G~S~GG~~a~~~a~~~p 781 (953)
..++.-+..--+.... . ...+-....|+...+++|.+. + .+|..+|+++|||+||+.++.++....
T Consensus 102 a~~~hpgs~~~~~~~~~~~~~~~~p~~~~erp~dis~lLd~L~~~~~sP~l~~~ld~~~Vgv~GhS~GG~T~m~laGA~~ 181 (365)
T COG4188 102 AAPDHPGSNAGGAPAAYAGPGSYAPAEWWERPLDISALLDALLQLTASPALAGRLDPQRVGVLGHSFGGYTAMELAGAEL 181 (365)
T ss_pred EeccCCCcccccCChhhcCCcccchhhhhcccccHHHHHHHHHHhhcCcccccccCccceEEEecccccHHHHHhccccc
Confidence 9966644322111100 0 011224467888888888776 4 588999999999999999999987553
Q ss_pred Cc---cc-EE----EEcc-cCCCCCCCCcCcccccchhhhhHHHHHhcC----------cc-------cccCCCCCcEEE
Q 002209 782 HL---FC-CG----IARS-GAYNRTLTPFGFQNEDRTLWEATSTYVEMS----------PF-------MSANKLKKPILL 835 (953)
Q Consensus 782 ~~---~~-a~----v~~~-~~~d~~~~~~~~~~~~~~~~~~~~~~~~~s----------p~-------~~~~~i~~P~Li 835 (953)
+. .+ |. ++.. +..+. ....+....|.....+...+ |. .-+.+++.|+++
T Consensus 182 ~~~~~~~~C~~~~~~~~~~~~~~~-----~~l~q~~av~~~~~~~~~rDpriravvA~~p~~~~~Fg~tgl~~v~~P~~~ 256 (365)
T COG4188 182 DAEALLQHCESASRICLDPPGLNG-----RLLNQCAAVWLPRQAYDLRDPRIRAVVAINPALGMIFGTTGLVKVTDPVLL 256 (365)
T ss_pred cHHHHHHHhhhhhhcccCCCCcCh-----hhhccccccccchhhhccccccceeeeeccCCcccccccccceeeecceee
Confidence 31 11 11 0000 00000 00001111111112222111 11 224567899999
Q ss_pred EEeCCCCCCCCchHH-HHHHHHHHHhCCCcEEEEEeCCCCccC
Q 002209 836 VHGEEDNNSGTLTMQ-SDRFFNALKGHGALCRLVILPFESHGY 877 (953)
Q Consensus 836 ~~G~~D~~v~~~~~~-~~~~~~~l~~~g~~~~~~~~~~~~H~~ 877 (953)
+.|..|...| +.. ....+..|. +....+.+.|++.|.-
T Consensus 257 ~a~s~D~~aP--~~~~~~~~f~~l~--g~~k~~~~vp~a~h~s 295 (365)
T COG4188 257 AAGSADGFAP--PVTEQIRPFGYLP--GALKYLRLVPGATHFS 295 (365)
T ss_pred ecccccccCC--cccccccccccCC--cchhheeecCCCcccc
Confidence 9999999766 333 334444443 3334677889999964
No 241
>KOG1273 consensus WD40 repeat protein [General function prediction only]
Probab=98.45 E-value=3.3e-05 Score=77.58 Aligned_cols=259 Identities=16% Similarity=0.096 Sum_probs=143.9
Q ss_pred ccceEeccCCCeEEEEEeeccccCCCCcceEEEEECCCCceeecccCCCccccccccceEEecCCeEEEEEecCCCCCCC
Q 002209 191 LNFVTWSQDGKHLAFSIRIDAEDSSSSKLRVWVADVDTGKARPLFQSPDIYLNAIFDNFVWVNNSTLLVCTIPLLRGDPP 270 (953)
Q Consensus 191 ~~~~~wSPDG~~laf~~~~~~~~~~~~~~~l~~~d~~~g~~~~lt~~~~~~~~~~~~~~~wspDg~~l~~~~~~~~~~~~ 270 (953)
.....||+-|.+||... .++.|.++|..+-.+-++....-.. +.+++||+||+.|+.++
T Consensus 26 a~~~~Fs~~G~~lAvGc---------~nG~vvI~D~~T~~iar~lsaH~~p----i~sl~WS~dgr~LltsS-------- 84 (405)
T KOG1273|consen 26 AECCQFSRWGDYLAVGC---------ANGRVVIYDFDTFRIARMLSAHVRP----ITSLCWSRDGRKLLTSS-------- 84 (405)
T ss_pred cceEEeccCcceeeeec---------cCCcEEEEEccccchhhhhhccccc----eeEEEecCCCCEeeeec--------
Confidence 56679999999999854 2557777777764443333322222 77999999999999662
Q ss_pred CCCCCCCCCceeecCCCccccchhhhhhcCCcchhhhhhhhccceEEEEEc-CC-ceeEeCCCCcccccccCCCCcEEEE
Q 002209 271 KKPLVPLGPKMQSNEKRDIIQVRTFQDLLKDEYDEDLFDYYATTQLVLVSL-DG-TVKEIGPPAVYTSLDPSPDEKYILI 348 (953)
Q Consensus 271 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~l~~~~~-~g-~~~~l~~~~~~~~~~~SpDG~~l~~ 348 (953)
....+-.+|+ .| -.+++.-+..+....|.|-.+..++
T Consensus 85 -----------------------------------------~D~si~lwDl~~gs~l~rirf~spv~~~q~hp~k~n~~v 123 (405)
T KOG1273|consen 85 -----------------------------------------RDWSIKLWDLLKGSPLKRIRFDSPVWGAQWHPRKRNKCV 123 (405)
T ss_pred -----------------------------------------CCceeEEEeccCCCceeEEEccCccceeeeccccCCeEE
Confidence 1134556777 66 3455544466777888885555544
Q ss_pred EEecCCccccccCCCCCcceEEEeccCceEEEeccCCCcccCCccccccccCccceeeccCCCCceEEEEeccCCCcccc
Q 002209 349 SSIHRPYSFIVPCGRFPRQVGVWTTDGIFVRELCDLPLAEDIPIAFNSVRKGMRSINWRSDKPSTLYWAETQDGGDAKVE 428 (953)
Q Consensus 349 ~~~~~~~~~~~~~~~~~~~i~~~d~~g~~~~~l~~~~~~~~~p~~~~~~~~~~~~~~wspDg~~i~~~~~~~~~~~~~~~ 428 (953)
+..-+ ..-++.++.....+.|...+..+ .+.. .+...|.+-|+.|+..
T Consensus 124 a~~~~------------~sp~vi~~s~~~h~~Lp~d~d~d-----ln~s---as~~~fdr~g~yIitG------------ 171 (405)
T KOG1273|consen 124 ATIME------------ESPVVIDFSDPKHSVLPKDDDGD-----LNSS---ASHGVFDRRGKYIITG------------ 171 (405)
T ss_pred EEEec------------CCcEEEEecCCceeeccCCCccc-----cccc---cccccccCCCCEEEEe------------
Confidence 44211 12334555543334443322111 0000 0112477778866655
Q ss_pred cccCCeEEEEecCCCCCCCce---EEeecccccCCeeeccCCceEEEEEecccCceEEEEEc-C--CCCCCCcEEeecCC
Q 002209 429 VTPRDIIYTQQAEPVQGEGPE---ILHKLDLRYGGISWCDDSLALVYESWYKTRRTRTWVIS-P--GSKDVAPRILFDRS 502 (953)
Q Consensus 429 ~~~~~~l~~~d~~~~~g~~~~---~l~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~l~~~d-~--~~~~~~~~~~~~~~ 502 (953)
..++.+.++++ .+-+.+ +++. -..+.++.++..|+.|++...+.. .|.|-+. + .+..+++... ..
T Consensus 172 -tsKGkllv~~a---~t~e~vas~rits-~~~IK~I~~s~~g~~liiNtsDRv--IR~ye~~di~~~~r~~e~e~~--~K 242 (405)
T KOG1273|consen 172 -TSKGKLLVYDA---ETLECVASFRITS-VQAIKQIIVSRKGRFLIINTSDRV--IRTYEISDIDDEGRDGEVEPE--HK 242 (405)
T ss_pred -cCcceEEEEec---chheeeeeeeech-heeeeEEEEeccCcEEEEecCCce--EEEEehhhhcccCccCCcChh--HH
Confidence 45667888885 222111 1111 234667889999999888765432 2444332 1 1111111110 11
Q ss_pred CccccCCCCCCCeEeccCCCEEEEEeeeccCCCcEEEEecCCCCCCCCCCeEEEEECCCCceEEEeccCc
Q 002209 503 SEDVYSDPGSPMMRRTSTGTYVIAKIKKENDEGTYILLNGNGATPEGNIPFLDLFDINTGSKERIWESDK 572 (953)
Q Consensus 503 ~~~~~~~~~~p~~~~SpDG~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~d~~~~~~~~l~~~~~ 572 (953)
.+++.+.-.--...||.||.++...... .-.||+|....|.+.++..+..
T Consensus 243 ~qDvVNk~~Wk~ccfs~dgeYv~a~s~~--------------------aHaLYIWE~~~GsLVKILhG~k 292 (405)
T KOG1273|consen 243 LQDVVNKLQWKKCCFSGDGEYVCAGSAR--------------------AHALYIWEKSIGSLVKILHGTK 292 (405)
T ss_pred HHHHHhhhhhhheeecCCccEEEecccc--------------------ceeEEEEecCCcceeeeecCCc
Confidence 1111110000115688999988766521 2249999999999999887765
No 242
>COG2272 PnbA Carboxylesterase type B [Lipid metabolism]
Probab=98.44 E-value=4.3e-07 Score=98.49 Aligned_cols=128 Identities=22% Similarity=0.175 Sum_probs=85.2
Q ss_pred EEEEEEcCCCCCCCCCCCccEEEEeCCCCCcCcCCCCcccCCCCCCCCccchHHHHHHHcC-cEEEEcCCCC-CCCCCCh
Q 002209 652 LSATLYLPPGYDPSKDGPLPCLFWSYPGEFKSKDAAGQVRGSPNEFPRIGSTSVLLWLARG-FAILGGPTTP-IIGEGDE 729 (953)
Q Consensus 652 ~~~~l~~P~~~~~~~~~~~P~vv~~hGg~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~G-~~V~~~~~~~-~~G~G~~ 729 (953)
++..+|.|+ .+. .+.|||||+|||.+..+..+ ...+ ....|+++| ++||.++|+- -.|+=.-
T Consensus 80 L~LNIwaP~--~~a--~~~PVmV~IHGG~y~~Gs~s----------~~~y--dgs~La~~g~vVvVSvNYRLG~lGfL~~ 143 (491)
T COG2272 80 LYLNIWAPE--VPA--EKLPVMVYIHGGGYIMGSGS----------EPLY--DGSALAARGDVVVVSVNYRLGALGFLDL 143 (491)
T ss_pred eeEEeeccC--CCC--CCCcEEEEEeccccccCCCc----------cccc--ChHHHHhcCCEEEEEeCcccccceeeeh
Confidence 666788898 222 34899999999865443221 1111 134688988 9999977752 2332110
Q ss_pred --hh--hhhhHHHHHHHHHHHHHHHHHc---CCCCCCcEEEEEeChHHHHHHHHHHhC--CCcccEEEEcccCCC
Q 002209 730 --EA--NDRFVEQLVACAEAAVEEVVRR---GVAHPSKIAVGGHSYGAFMTANLLAHA--PHLFCCGIARSGAYN 795 (953)
Q Consensus 730 --~~--~~~~~~~~~~D~~~~~~~l~~~---~~~d~~~i~l~G~S~GG~~a~~~a~~~--p~~~~a~v~~~~~~d 795 (953)
.. ......-.+.|++.+++|+.++ -.-|+++|.|+|+|.||+.++.+++.. ..+|+-+|+.+|...
T Consensus 144 ~~~~~~~~~~~n~Gl~DqilALkWV~~NIe~FGGDp~NVTl~GeSAGa~si~~Lla~P~AkGLF~rAi~~Sg~~~ 218 (491)
T COG2272 144 SSLDTEDAFASNLGLLDQILALKWVRDNIEAFGGDPQNVTLFGESAGAASILTLLAVPSAKGLFHRAIALSGAAS 218 (491)
T ss_pred hhccccccccccccHHHHHHHHHHHHHHHHHhCCCccceEEeeccchHHHHHHhhcCccchHHHHHHHHhCCCCC
Confidence 00 0011124588999999999875 346999999999999999998887752 136888888887653
No 243
>KOG0284 consensus Polyadenylation factor I complex, subunit PFS2 [RNA processing and modification]
Probab=98.42 E-value=2.1e-06 Score=88.91 Aligned_cols=225 Identities=16% Similarity=0.210 Sum_probs=131.2
Q ss_pred cccceEeccCCCeEEEEEeeccccCCCCcceEEEEECCCCceeecccCCCccccccccceEEecCCeEEEEEecCCCCCC
Q 002209 190 KLNFVTWSQDGKHLAFSIRIDAEDSSSSKLRVWVADVDTGKARPLFQSPDIYLNAIFDNFVWVNNSTLLVCTIPLLRGDP 269 (953)
Q Consensus 190 ~~~~~~wSPDG~~laf~~~~~~~~~~~~~~~l~~~d~~~g~~~~lt~~~~~~~~~~~~~~~wspDg~~l~~~~~~~~~~~ 269 (953)
.+..+.|.|+|++|+..+. .|...|| +..+=.-..+....+. .+....||++|.+++.. +..
T Consensus 98 ~V~~v~WtPeGRRLltgs~-------SGEFtLW--Ng~~fnFEtilQaHDs----~Vr~m~ws~~g~wmiSg--D~g--- 159 (464)
T KOG0284|consen 98 PVNVVRWTPEGRRLLTGSQ-------SGEFTLW--NGTSFNFETILQAHDS----PVRTMKWSHNGTWMISG--DKG--- 159 (464)
T ss_pred ceeeEEEcCCCceeEeecc-------cccEEEe--cCceeeHHHHhhhhcc----cceeEEEccCCCEEEEc--CCC---
Confidence 5788999999999998664 3355665 3211111112121222 27789999999999854 111
Q ss_pred CCCCCCCCCCceeecCCCccccchhhhhhcCCcchhhhhhhhccceEEEEEcCCceeEeCC-C-CcccccccCCCCcEEE
Q 002209 270 PKKPLVPLGPKMQSNEKRDIIQVRTFQDLLKDEYDEDLFDYYATTQLVLVSLDGTVKEIGP-P-AVYTSLDPSPDEKYIL 347 (953)
Q Consensus 270 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~l~~~~~~g~~~~l~~-~-~~~~~~~~SpDG~~l~ 347 (953)
+.-..|.-+.+- ++.+.. . ..++.++|||.....+
T Consensus 160 ------------------------------------------G~iKyWqpnmnn-Vk~~~ahh~eaIRdlafSpnDskF~ 196 (464)
T KOG0284|consen 160 ------------------------------------------GMIKYWQPNMNN-VKIIQAHHAEAIRDLAFSPNDSKFL 196 (464)
T ss_pred ------------------------------------------ceEEecccchhh-hHHhhHhhhhhhheeccCCCCceeE
Confidence 111222222211 111111 1 5678899999655555
Q ss_pred EEEecCCccccccCCCCCcceEEEecc-CceEEEeccCCCcccCCccccccccCccceeeccCCCCceEEEEeccCCCcc
Q 002209 348 ISSIHRPYSFIVPCGRFPRQVGVWTTD-GIFVRELCDLPLAEDIPIAFNSVRKGMRSINWRSDKPSTLYWAETQDGGDAK 426 (953)
Q Consensus 348 ~~~~~~~~~~~~~~~~~~~~i~~~d~~-g~~~~~l~~~~~~~~~p~~~~~~~~~~~~~~wspDg~~i~~~~~~~~~~~~~ 426 (953)
..+.++ .|.+||.. .++.+.|..+. .-++++.|.|....|+-.
T Consensus 197 t~SdDg-------------~ikiWdf~~~kee~vL~GHg-------------wdVksvdWHP~kgLiasg---------- 240 (464)
T KOG0284|consen 197 TCSDDG-------------TIKIWDFRMPKEERVLRGHG-------------WDVKSVDWHPTKGLIASG---------- 240 (464)
T ss_pred EecCCC-------------eEEEEeccCCchhheeccCC-------------CCcceeccCCccceeEEc----------
Confidence 555343 89999986 55666665432 235789999976544443
Q ss_pred cccccCCeEEEEecCCCCCCCceEEeecccccCCeeeccCCceEEEEEecccCceEEEEEcCCCCCCCcEEeecCCCccc
Q 002209 427 VEVTPRDIIYTQQAEPVQGEGPEILHKLDLRYGGISWCDDSLALVYESWYKTRRTRTWVISPGSKDVAPRILFDRSSEDV 506 (953)
Q Consensus 427 ~~~~~~~~l~~~d~~~~~g~~~~~l~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~ 506 (953)
+..+.|-+|| |.+|...-.+..+...+..+.|+|+|.+|+..+.+. .+.++|..+- +..........++
T Consensus 241 ---skDnlVKlWD--prSg~cl~tlh~HKntVl~~~f~~n~N~Llt~skD~----~~kv~DiR~m--kEl~~~r~Hkkdv 309 (464)
T KOG0284|consen 241 ---SKDNLVKLWD--PRSGSCLATLHGHKNTVLAVKFNPNGNWLLTGSKDQ----SCKVFDIRTM--KELFTYRGHKKDV 309 (464)
T ss_pred ---cCCceeEeec--CCCcchhhhhhhccceEEEEEEcCCCCeeEEccCCc----eEEEEehhHh--HHHHHhhcchhhh
Confidence 3445678888 466655555667777888999999999998876554 3444454321 1122223333333
Q ss_pred cCCCCCCCeEeccCCCEEEEEe
Q 002209 507 YSDPGSPMMRRTSTGTYVIAKI 528 (953)
Q Consensus 507 ~~~~~~p~~~~SpDG~~l~~~~ 528 (953)
.. +.|+|=-.-|+...
T Consensus 310 ~~------~~WhP~~~~lftsg 325 (464)
T KOG0284|consen 310 TS------LTWHPLNESLFTSG 325 (464)
T ss_pred ee------eccccccccceeec
Confidence 33 66777666555443
No 244
>PF00135 COesterase: Carboxylesterase family The prints entry is specific to acetylcholinesterase; InterPro: IPR002018 Higher eukaryotes have many distinct esterases. Among the different types are those which act on carboxylic esters (3.1.1 from EC). Carboxyl-esterases have been classified into three categories (A, B and C) on the basis of differential patterns of inhibition by organophosphates. The sequence of a number of type-B carboxylesterases indicates [, , ] that the majority are evolutionary related. As is the case for lipases and serine proteases, the catalytic apparatus of esterases involves three residues (catalytic triad): a serine, a glutamate or aspartate and a histidine.; PDB: 3B3Q_A 1CLE_B 1GQS_A 2VJD_A 1HBJ_A 2C5G_A 1U65_A 2WG1_A 1FSS_A 3M3D_A ....
Probab=98.40 E-value=4.5e-07 Score=107.40 Aligned_cols=127 Identities=23% Similarity=0.263 Sum_probs=81.9
Q ss_pred EEEEEEcCCCCCCCCCCCccEEEEeCCCCCcCcCCCCcccCCCCCCCCccchHHHHHHHcCcEEEEcCCCC-CCCC---C
Q 002209 652 LSATLYLPPGYDPSKDGPLPCLFWSYPGEFKSKDAAGQVRGSPNEFPRIGSTSVLLWLARGFAILGGPTTP-IIGE---G 727 (953)
Q Consensus 652 ~~~~l~~P~~~~~~~~~~~P~vv~~hGg~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~G~~V~~~~~~~-~~G~---G 727 (953)
++..+|.|....... ++||+||+|||.+..+.. ... .......++.++++||.++||- ..|+ +
T Consensus 109 L~LnI~~P~~~~~~~--~lPV~v~ihGG~f~~G~~---------~~~--~~~~~~~~~~~~vivVt~nYRlg~~Gfl~~~ 175 (535)
T PF00135_consen 109 LYLNIYTPSNASSNS--KLPVMVWIHGGGFMFGSG---------SFP--PYDGASLAASKDVIVVTINYRLGAFGFLSLG 175 (535)
T ss_dssp -EEEEEEETSSSSTT--SEEEEEEE--STTTSSCT---------TSG--GGHTHHHHHHHTSEEEEE----HHHHH-BSS
T ss_pred HHHhhhhcccccccc--ccceEEEeecccccCCCc---------ccc--cccccccccCCCEEEEEeccccccccccccc
Confidence 677899998754332 599999999986543321 011 1112335678999999988752 1221 1
Q ss_pred ChhhhhhhHHHHHHHHHHHHHHHHHc---CCCCCCcEEEEEeChHHHHHHHHHHhC--CCcccEEEEcccC
Q 002209 728 DEEANDRFVEQLVACAEAAVEEVVRR---GVAHPSKIAVGGHSYGAFMTANLLAHA--PHLFCCGIARSGA 793 (953)
Q Consensus 728 ~~~~~~~~~~~~~~D~~~~~~~l~~~---~~~d~~~i~l~G~S~GG~~a~~~a~~~--p~~~~a~v~~~~~ 793 (953)
..... .+...+.|+..|++|+.++ -.-|+++|-|+|+|.||..+..++... ..+|+.+|+.+|.
T Consensus 176 ~~~~~--~gN~Gl~Dq~~AL~WV~~nI~~FGGDp~~VTl~G~SAGa~sv~~~l~sp~~~~LF~raI~~SGs 244 (535)
T PF00135_consen 176 DLDAP--SGNYGLLDQRLALKWVQDNIAAFGGDPDNVTLFGQSAGAASVSLLLLSPSSKGLFHRAILQSGS 244 (535)
T ss_dssp STTSH--BSTHHHHHHHHHHHHHHHHGGGGTEEEEEEEEEEETHHHHHHHHHHHGGGGTTSBSEEEEES--
T ss_pred ccccC--chhhhhhhhHHHHHHHHhhhhhcccCCcceeeeeecccccccceeeeccccccccccccccccc
Confidence 11111 2456789999999999885 236899999999999999998887753 2589999999984
No 245
>KOG0283 consensus WD40 repeat-containing protein [Function unknown]
Probab=98.39 E-value=9.1e-06 Score=92.11 Aligned_cols=198 Identities=15% Similarity=0.112 Sum_probs=115.6
Q ss_pred cccceEeccCCCeEEEEEeeccccCCCCcceEEEEECCCCceeecccCCCccccccccceEEecCCeEEEEEecCCCCCC
Q 002209 190 KLNFVTWSQDGKHLAFSIRIDAEDSSSSKLRVWVADVDTGKARPLFQSPDIYLNAIFDNFVWVNNSTLLVCTIPLLRGDP 269 (953)
Q Consensus 190 ~~~~~~wSPDG~~laf~~~~~~~~~~~~~~~l~~~d~~~g~~~~lt~~~~~~~~~~~~~~~wspDg~~l~~~~~~~~~~~ 269 (953)
.+-.++||-+ ..|+-.+- +..+.+|++...+...++.+.+- +..++|.|-....|++.
T Consensus 371 DILDlSWSKn-~fLLSSSM---------DKTVRLWh~~~~~CL~~F~Hndf-----VTcVaFnPvDDryFiSG------- 428 (712)
T KOG0283|consen 371 DILDLSWSKN-NFLLSSSM---------DKTVRLWHPGRKECLKVFSHNDF-----VTCVAFNPVDDRYFISG------- 428 (712)
T ss_pred hheecccccC-CeeEeccc---------cccEEeecCCCcceeeEEecCCe-----eEEEEecccCCCcEeec-------
Confidence 6888999954 46666442 34555566667788888777663 77889998766555441
Q ss_pred CCCCCCCCCCceeecCCCccccchhhhhhcCCcchhhhhhhhccceEEEEEc-CCceeEeCCC-CcccccccCCCCcEEE
Q 002209 270 PKKPLVPLGPKMQSNEKRDIIQVRTFQDLLKDEYDEDLFDYYATTQLVLVSL-DGTVKEIGPP-AVYTSLDPSPDEKYIL 347 (953)
Q Consensus 270 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~l~~~~~-~g~~~~l~~~-~~~~~~~~SpDG~~l~ 347 (953)
.-| ..+.++++ +.++..-++- ..++.++++|||+..+
T Consensus 429 --------------------------------SLD---------~KvRiWsI~d~~Vv~W~Dl~~lITAvcy~PdGk~av 467 (712)
T KOG0283|consen 429 --------------------------------SLD---------GKVRLWSISDKKVVDWNDLRDLITAVCYSPDGKGAV 467 (712)
T ss_pred --------------------------------ccc---------cceEEeecCcCeeEeehhhhhhheeEEeccCCceEE
Confidence 011 23444455 4444433333 7789999999999999
Q ss_pred EEEecCCccccccCCCCCcceEEEeccCceEEE---eccCCCcccCCccccccccCccceeeccCCCC-ceEEEEeccCC
Q 002209 348 ISSIHRPYSFIVPCGRFPRQVGVWTTDGIFVRE---LCDLPLAEDIPIAFNSVRKGMRSINWRSDKPS-TLYWAETQDGG 423 (953)
Q Consensus 348 ~~~~~~~~~~~~~~~~~~~~i~~~d~~g~~~~~---l~~~~~~~~~p~~~~~~~~~~~~~~wspDg~~-i~~~~~~~~~~ 423 (953)
+.+. .+...+|+..+-.... |....... .....+.++.|.|-... ++..
T Consensus 468 IGt~-------------~G~C~fY~t~~lk~~~~~~I~~~~~Kk-------~~~~rITG~Q~~p~~~~~vLVT------- 520 (712)
T KOG0283|consen 468 IGTF-------------NGYCRFYDTEGLKLVSDFHIRLHNKKK-------KQGKRITGLQFFPGDPDEVLVT------- 520 (712)
T ss_pred EEEe-------------ccEEEEEEccCCeEEEeeeEeeccCcc-------ccCceeeeeEecCCCCCeEEEe-------
Confidence 8874 3477888877654332 22111110 01113556777764433 4444
Q ss_pred CcccccccCCeEEEEecCCCCCCCceEEeeccccc---CCeeeccCCceEEEEEecccCceEEEEEcCCC
Q 002209 424 DAKVEVTPRDIIYTQQAEPVQGEGPEILHKLDLRY---GGISWCDDSLALVYESWYKTRRTRTWVISPGS 490 (953)
Q Consensus 424 ~~~~~~~~~~~l~~~d~~~~~g~~~~~l~~~~~~~---~~~~~SpDg~~l~~~~~~~~~~~~l~~~d~~~ 490 (953)
+.+.+|.++|. ...+.....++..+. ....|+.||++|+.++.+. .+|+++.+.
T Consensus 521 ------SnDSrIRI~d~---~~~~lv~KfKG~~n~~SQ~~Asfs~Dgk~IVs~seDs----~VYiW~~~~ 577 (712)
T KOG0283|consen 521 ------SNDSRIRIYDG---RDKDLVHKFKGFRNTSSQISASFSSDGKHIVSASEDS----WVYIWKNDS 577 (712)
T ss_pred ------cCCCceEEEec---cchhhhhhhcccccCCcceeeeEccCCCEEEEeecCc----eEEEEeCCC
Confidence 44567888873 112222212222222 2368999999999998443 455555433
No 246
>KOG0288 consensus WD40 repeat protein TipD [General function prediction only]
Probab=98.38 E-value=3.4e-06 Score=87.51 Aligned_cols=126 Identities=14% Similarity=0.060 Sum_probs=86.1
Q ss_pred ceEEEEEc-CCce-eEeCCCCcccccccCCCCcEEEEEEecCCccccccCCCCCcceEEEeccCceEEEeccCCCcccCC
Q 002209 314 TQLVLVSL-DGTV-KEIGPPAVYTSLDPSPDEKYILISSIHRPYSFIVPCGRFPRQVGVWTTDGIFVRELCDLPLAEDIP 391 (953)
Q Consensus 314 ~~l~~~~~-~g~~-~~l~~~~~~~~~~~SpDG~~l~~~~~~~~~~~~~~~~~~~~~i~~~d~~g~~~~~l~~~~~~~~~p 391 (953)
..|..+|. ++.. ..+..++.++++..|+||..|+..+.++ .+-+.|+.+.+++....-++...
T Consensus 322 kkvRfwD~Rs~~~~~sv~~gg~vtSl~ls~~g~~lLsssRDd-------------tl~viDlRt~eI~~~~sA~g~k~-- 386 (459)
T KOG0288|consen 322 KKVRFWDIRSADKTRSVPLGGRVTSLDLSMDGLELLSSSRDD-------------TLKVIDLRTKEIRQTFSAEGFKC-- 386 (459)
T ss_pred cceEEEeccCCceeeEeecCcceeeEeeccCCeEEeeecCCC-------------ceeeeecccccEEEEeecccccc--
Confidence 34666776 5543 3344448899999999999998776443 78889999988887655433211
Q ss_pred ccccccccCccceeeccCCCCceEEEEeccCCCcccccccCCeEEEEecCCCCCCCceE-Eeecc--cccCCeeeccCCc
Q 002209 392 IAFNSVRKGMRSINWRSDKPSTLYWAETQDGGDAKVEVTPRDIIYTQQAEPVQGEGPEI-LHKLD--LRYGGISWCDDSL 468 (953)
Q Consensus 392 ~~~~~~~~~~~~~~wspDg~~i~~~~~~~~~~~~~~~~~~~~~l~~~d~~~~~g~~~~~-l~~~~--~~~~~~~~SpDg~ 468 (953)
+ .......|||||.+++-. +..+.||+|++ .+++.+. +.... ..+.+++|+|-|+
T Consensus 387 ----a--sDwtrvvfSpd~~YvaAG-------------S~dgsv~iW~v---~tgKlE~~l~~s~s~~aI~s~~W~~sG~ 444 (459)
T KOG0288|consen 387 ----A--SDWTRVVFSPDGSYVAAG-------------SADGSVYIWSV---FTGKLEKVLSLSTSNAAITSLSWNPSGS 444 (459)
T ss_pred ----c--cccceeEECCCCceeeec-------------cCCCcEEEEEc---cCceEEEEeccCCCCcceEEEEEcCCCc
Confidence 0 113457899999976655 55678999997 5555544 32222 2477899999999
Q ss_pred eEEEEEec
Q 002209 469 ALVYESWY 476 (953)
Q Consensus 469 ~l~~~~~~ 476 (953)
.|+.+...
T Consensus 445 ~Llsadk~ 452 (459)
T KOG0288|consen 445 GLLSADKQ 452 (459)
T ss_pred hhhcccCC
Confidence 98877543
No 247
>KOG2139 consensus WD40 repeat protein [General function prediction only]
Probab=98.38 E-value=1.4e-05 Score=81.62 Aligned_cols=156 Identities=15% Similarity=0.135 Sum_probs=92.5
Q ss_pred CcccccccCCCCcEEEEEEecCCccccccCCCCCcceEEEeccCceEEEeccCCCcccCCccccccccCccceeeccCCC
Q 002209 332 AVYTSLDPSPDEKYILISSIHRPYSFIVPCGRFPRQVGVWTTDGIFVRELCDLPLAEDIPIAFNSVRKGMRSINWRSDKP 411 (953)
Q Consensus 332 ~~~~~~~~SpDG~~l~~~~~~~~~~~~~~~~~~~~~i~~~d~~g~~~~~l~~~~~~~~~p~~~~~~~~~~~~~~wspDg~ 411 (953)
..++++.|.+||..++-++... ..|.+||++.+...+|.... .+|+..+.|||||.
T Consensus 196 ~pVtsmqwn~dgt~l~tAS~gs------------ssi~iWdpdtg~~~pL~~~g------------lgg~slLkwSPdgd 251 (445)
T KOG2139|consen 196 NPVTSMQWNEDGTILVTASFGS------------SSIMIWDPDTGQKIPLIPKG------------LGGFSLLKWSPDGD 251 (445)
T ss_pred ceeeEEEEcCCCCEEeecccCc------------ceEEEEcCCCCCcccccccC------------CCceeeEEEcCCCC
Confidence 5678999999999988777432 37999999987766665221 14556799999998
Q ss_pred CceEEEEeccCCCcccccccCCeEEEEecCCCCCCCceEEeecccccCCeeeccCCceEEEEEecccCceEEEEEcCCCC
Q 002209 412 STLYWAETQDGGDAKVEVTPRDIIYTQQAEPVQGEGPEILHKLDLRYGGISWCDDSLALVYESWYKTRRTRTWVISPGSK 491 (953)
Q Consensus 412 ~i~~~~~~~~~~~~~~~~~~~~~l~~~d~~~~~g~~~~~l~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~l~~~d~~~~ 491 (953)
.+.-. .-.....+|.. ...-..++..-..+.+....|||+|+.|+|+.... ..||.+..++.
T Consensus 252 ~lfaA-------------t~davfrlw~e--~q~wt~erw~lgsgrvqtacWspcGsfLLf~~sgs---p~lysl~f~~~ 313 (445)
T KOG2139|consen 252 VLFAA-------------TCDAVFRLWQE--NQSWTKERWILGSGRVQTACWSPCGSFLLFACSGS---PRLYSLTFDGE 313 (445)
T ss_pred EEEEe-------------cccceeeeehh--cccceecceeccCCceeeeeecCCCCEEEEEEcCC---ceEEEEeecCC
Confidence 65443 11122234431 11111112222334777889999999999987544 36777765543
Q ss_pred CC---------CcEEeecCCC------ccccCCCCCCCeEeccCCCEEEEEeee
Q 002209 492 DV---------APRILFDRSS------EDVYSDPGSPMMRRTSTGTYVIAKIKK 530 (953)
Q Consensus 492 ~~---------~~~~~~~~~~------~~~~~~~~~p~~~~SpDG~~l~~~~~~ 530 (953)
.. +...+.|... +..-. .+...++|.|-|.+|+...++
T Consensus 314 ~~~~~~~~~~k~~lliaDL~e~ti~ag~~l~c-geaq~lawDpsGeyLav~fKg 366 (445)
T KOG2139|consen 314 DSVFLRPQSIKRVLLIADLQEVTICAGQRLCC-GEAQCLAWDPSGEYLAVIFKG 366 (445)
T ss_pred CccccCcccceeeeeeccchhhhhhcCccccc-CccceeeECCCCCEEEEEEcC
Confidence 21 1111112110 00001 022338899999999988754
No 248
>KOG0771 consensus Prolactin regulatory element-binding protein/Protein transport protein SEC12p [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.38 E-value=8.3e-06 Score=85.28 Aligned_cols=194 Identities=15% Similarity=0.142 Sum_probs=111.6
Q ss_pred HHHhhcCCCCCCceecCCCCEEEEEecCCCCCccccccccceeceEEecCCCCCCcceeeeeceEEEEccCCCCCCceee
Q 002209 102 IREIVDAPPLPALSFSPQRDKILFLKRRALPPLEELARPEEKLAGLRIDGKCNTRSRMSFYTGIGIHQLFPDGKLGQEIE 181 (953)
Q Consensus 102 ~~~~~~~~~~~~~~~SPDG~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~i~~~~~~g~~~~~~~ 181 (953)
+..+.+...-..++|++||..|+....+ +.++||+.+.. .+.
T Consensus 138 ~~~l~~~g~~k~vaf~~~gs~latgg~d---------------------------------g~lRv~~~Ps~-----~t~ 179 (398)
T KOG0771|consen 138 YQKLVDFGQQKVVAFNGDGSKLATGGTD---------------------------------GTLRVWEWPSM-----LTI 179 (398)
T ss_pred hHHHhhcCcceEEEEcCCCCEeeecccc---------------------------------ceEEEEecCcc-----hhh
Confidence 3333333333567888998888877654 35678886431 111
Q ss_pred eecCCCCCcccceEeccCCCeEEEEEeeccccCCCCcceEEEEECCCCc-eeecccCCCccccccccceEEecCC---eE
Q 002209 182 IQGFPDGAKLNFVTWSQDGKHLAFSIRIDAEDSSSSKLRVWVADVDTGK-ARPLFQSPDIYLNAIFDNFVWVNNS---TL 257 (953)
Q Consensus 182 l~~~~~~~~~~~~~wSPDG~~laf~~~~~~~~~~~~~~~l~~~d~~~g~-~~~lt~~~~~~~~~~~~~~~wspDg---~~ 257 (953)
+....+...+....|||||+.|++... ....+|++++|. ...+++..... .+..+.|+-|+ ..
T Consensus 180 l~e~~~~~eV~DL~FS~dgk~lasig~----------d~~~VW~~~~g~~~a~~t~~~k~~---~~~~cRF~~d~~~~~l 246 (398)
T KOG0771|consen 180 LEEIAHHAEVKDLDFSPDGKFLASIGA----------DSARVWSVNTGAALARKTPFSKDE---MFSSCRFSVDNAQETL 246 (398)
T ss_pred hhhHhhcCccccceeCCCCcEEEEecC----------CceEEEEeccCchhhhcCCcccch---hhhhceecccCCCceE
Confidence 211223447899999999999999752 255666776764 33455333322 26788999777 33
Q ss_pred EEEEecCCCCCCCCCCCCCCCCceeecCCCccccchhhhhhcCCcchhhhhhhhccceEEEEEc-CC----ceeEeCCC-
Q 002209 258 LVCTIPLLRGDPPKKPLVPLGPKMQSNEKRDIIQVRTFQDLLKDEYDEDLFDYYATTQLVLVSL-DG----TVKEIGPP- 331 (953)
Q Consensus 258 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~l~~~~~-~g----~~~~l~~~- 331 (953)
.+++..... +...++.+.+ .+ ..+.....
T Consensus 247 ~laa~~~~~---------------------------------------------~~v~~~~~~~w~~~~~l~~~~~~~~~ 281 (398)
T KOG0771|consen 247 RLAASQFPG---------------------------------------------GGVRLCDISLWSGSNFLRLRKKIKRF 281 (398)
T ss_pred EEEEecCCC---------------------------------------------CceeEEEeeeeccccccchhhhhhcc
Confidence 333311000 1111222233 33 33333333
Q ss_pred CcccccccCCCCcEEEEEEecCCccccccCCCCCcceEEEeccCceEEEeccCCCcccCCccccccccCccceeeccCCC
Q 002209 332 AVYTSLDPSPDEKYILISSIHRPYSFIVPCGRFPRQVGVWTTDGIFVRELCDLPLAEDIPIAFNSVRKGMRSINWRSDKP 411 (953)
Q Consensus 332 ~~~~~~~~SpDG~~l~~~~~~~~~~~~~~~~~~~~~i~~~d~~g~~~~~l~~~~~~~~~p~~~~~~~~~~~~~~wspDg~ 411 (953)
..+++++.|+||+++|..+.++ .|-+++...=+.-.+... .+..-+..+.|+||.+
T Consensus 282 ~siSsl~VS~dGkf~AlGT~dG-------------sVai~~~~~lq~~~~vk~-----------aH~~~VT~ltF~Pdsr 337 (398)
T KOG0771|consen 282 KSISSLAVSDDGKFLALGTMDG-------------SVAIYDAKSLQRLQYVKE-----------AHLGFVTGLTFSPDSR 337 (398)
T ss_pred CcceeEEEcCCCcEEEEeccCC-------------cEEEEEeceeeeeEeehh-----------hheeeeeeEEEcCCcC
Confidence 6789999999999999998654 677776653322222211 1112346789999998
Q ss_pred CceE
Q 002209 412 STLY 415 (953)
Q Consensus 412 ~i~~ 415 (953)
.++-
T Consensus 338 ~~~s 341 (398)
T KOG0771|consen 338 YLAS 341 (398)
T ss_pred cccc
Confidence 6554
No 249
>KOG1539 consensus WD repeat protein [General function prediction only]
Probab=98.37 E-value=0.00032 Score=79.61 Aligned_cols=195 Identities=13% Similarity=0.069 Sum_probs=105.2
Q ss_pred CcccccccCCCCcEEEEEEecCCccccccCCCCCcceEEEeccCceEEEecc-CCCcccCCccccccccCccceeeccCC
Q 002209 332 AVYTSLDPSPDEKYILISSIHRPYSFIVPCGRFPRQVGVWTTDGIFVRELCD-LPLAEDIPIAFNSVRKGMRSINWRSDK 410 (953)
Q Consensus 332 ~~~~~~~~SpDG~~l~~~~~~~~~~~~~~~~~~~~~i~~~d~~g~~~~~l~~-~~~~~~~p~~~~~~~~~~~~~~wspDg 410 (953)
.....++.|+=|.+.+..... +.|.++++..+-.+.-.. .+.. . ..++ ..+-|+
T Consensus 449 ~~~~av~vs~CGNF~~IG~S~-------------G~Id~fNmQSGi~r~sf~~~~ah-~---------~~V~--gla~D~ 503 (910)
T KOG1539|consen 449 INATAVCVSFCGNFVFIGYSK-------------GTIDRFNMQSGIHRKSFGDSPAH-K---------GEVT--GLAVDG 503 (910)
T ss_pred cceEEEEEeccCceEEEeccC-------------CeEEEEEcccCeeecccccCccc-c---------Ccee--EEEecC
Confidence 556788889888877665422 378888887655443221 1111 0 0111 123333
Q ss_pred CCceEEEEeccCCCcccccccCCeEEEEecCCCCCCCceEEeec--ccccCCeeeccCCceEEEEEecccCceEEEEEcC
Q 002209 411 PSTLYWAETQDGGDAKVEVTPRDIIYTQQAEPVQGEGPEILHKL--DLRYGGISWCDDSLALVYESWYKTRRTRTWVISP 488 (953)
Q Consensus 411 ~~i~~~~~~~~~~~~~~~~~~~~~l~~~d~~~~~g~~~~~l~~~--~~~~~~~~~SpDg~~l~~~~~~~~~~~~l~~~d~ 488 (953)
..-... ..+..+.+-.|+. ..+. .+... ......+........++.+. ++ ..|.++|.
T Consensus 504 ~n~~~v-----------sa~~~Gilkfw~f---~~k~--l~~~l~l~~~~~~iv~hr~s~l~a~~~-dd---f~I~vvD~ 563 (910)
T KOG1539|consen 504 TNRLLV-----------SAGADGILKFWDF---KKKV--LKKSLRLGSSITGIVYHRVSDLLAIAL-DD---FSIRVVDV 563 (910)
T ss_pred CCceEE-----------EccCcceEEEEec---CCcc--eeeeeccCCCcceeeeeehhhhhhhhc-Cc---eeEEEEEc
Confidence 321111 1134556777775 3222 22111 11223344444444333332 21 35777887
Q ss_pred CCCCCCcEEeecCCCccccCCCCCCCeEeccCCCEEEEEeeeccCCCcEEEEecCCCCCCCCCCeEEEEECCCCceEEEe
Q 002209 489 GSKDVAPRILFDRSSEDVYSDPGSPMMRRTSTGTYVIAKIKKENDEGTYILLNGNGATPEGNIPFLDLFDINTGSKERIW 568 (953)
Q Consensus 489 ~~~~~~~~~~~~~~~~~~~~~~~~p~~~~SpDG~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~d~~~~~~~~l~ 568 (953)
.+. +....+......+.. +.|||||+||+....+. .|..||+.++......
T Consensus 564 ~t~--kvvR~f~gh~nritd------~~FS~DgrWlisasmD~---------------------tIr~wDlpt~~lID~~ 614 (910)
T KOG1539|consen 564 VTR--KVVREFWGHGNRITD------MTFSPDGRWLISASMDS---------------------TIRTWDLPTGTLIDGL 614 (910)
T ss_pred hhh--hhhHHhhccccceee------eEeCCCCcEEEEeecCC---------------------cEEEEeccCcceeeeE
Confidence 653 222222222222222 78999999999888643 3999999998766544
Q ss_pred ccCcccceeeeEeeccCCccccccccCCEEEEEEecCCCCceEEEEE
Q 002209 569 ESDKEKYYETTVALMSDQTEGDLYLNQLKILTSKESKTENTQYYIQS 615 (953)
Q Consensus 569 ~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~p~~l~~~~ 615 (953)
.-+.. .+ ..+|||+|..++.+..+.. .||+|.
T Consensus 615 ~vd~~-----~~-------sls~SPngD~LAT~Hvd~~---gIylWs 646 (910)
T KOG1539|consen 615 LVDSP-----CT-------SLSFSPNGDFLATVHVDQN---GIYLWS 646 (910)
T ss_pred ecCCc-----ce-------eeEECCCCCEEEEEEecCc---eEEEEE
Confidence 33322 12 2579999999998888754 477764
No 250
>KOG0275 consensus Conserved WD40 repeat-containing protein [General function prediction only]
Probab=98.36 E-value=4.9e-06 Score=83.23 Aligned_cols=179 Identities=12% Similarity=0.129 Sum_probs=103.1
Q ss_pred eEEEEEc-CC-ceeEeCCC--CcccccccCCCCcEEEEEEecCCccccccCCCCCcceEEEecc-CceEEEeccCCCccc
Q 002209 315 QLVLVSL-DG-TVKEIGPP--AVYTSLDPSPDEKYILISSIHRPYSFIVPCGRFPRQVGVWTTD-GIFVRELCDLPLAED 389 (953)
Q Consensus 315 ~l~~~~~-~g-~~~~l~~~--~~~~~~~~SpDG~~l~~~~~~~~~~~~~~~~~~~~~i~~~d~~-g~~~~~l~~~~~~~~ 389 (953)
+|-++.+ +| -.+++... .+++.+.||.|+..|+..+.+ ..+.+.-+. |+..++...+.
T Consensus 286 kIKvWri~tG~ClRrFdrAHtkGvt~l~FSrD~SqiLS~sfD-------------~tvRiHGlKSGK~LKEfrGHs---- 348 (508)
T KOG0275|consen 286 KIKVWRIETGQCLRRFDRAHTKGVTCLSFSRDNSQILSASFD-------------QTVRIHGLKSGKCLKEFRGHS---- 348 (508)
T ss_pred cEEEEEEecchHHHHhhhhhccCeeEEEEccCcchhhccccc-------------ceEEEeccccchhHHHhcCcc----
Confidence 3334444 55 34444422 788999999999999887744 366666665 33333333222
Q ss_pred CCccccccccCccceeeccCCCCceEEEEeccCCCcccccccCCeEEEEecCCCCCCC-ceE--EeecccccCCeeeccC
Q 002209 390 IPIAFNSVRKGMRSINWRSDKPSTLYWAETQDGGDAKVEVTPRDIIYTQQAEPVQGEG-PEI--LHKLDLRYGGISWCDD 466 (953)
Q Consensus 390 ~p~~~~~~~~~~~~~~wspDg~~i~~~~~~~~~~~~~~~~~~~~~l~~~d~~~~~g~~-~~~--l~~~~~~~~~~~~SpD 466 (953)
..+....|++||..|+-. +..+.+-+|+. ..++ ... ....+..+.++-.-|.
T Consensus 349 ---------Syvn~a~ft~dG~~iisa-------------SsDgtvkvW~~---KtteC~~Tfk~~~~d~~vnsv~~~PK 403 (508)
T KOG0275|consen 349 ---------SYVNEATFTDDGHHIISA-------------SSDGTVKVWHG---KTTECLSTFKPLGTDYPVNSVILLPK 403 (508)
T ss_pred ---------ccccceEEcCCCCeEEEe-------------cCCccEEEecC---cchhhhhhccCCCCcccceeEEEcCC
Confidence 234567899999987665 44567778874 2211 111 1234455666666666
Q ss_pred CceEEEEEecccCceEEEEEcCCCCCCCcEEeecCC--CccccCCCCCCCeEeccCCCEEEEEeeeccCCCcEEEEecCC
Q 002209 467 SLALVYESWYKTRRTRTWVISPGSKDVAPRILFDRS--SEDVYSDPGSPMMRRTSTGTYVIAKIKKENDEGTYILLNGNG 544 (953)
Q Consensus 467 g~~l~~~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~--~~~~~~~~~~p~~~~SpDG~~l~~~~~~~~~~~~~~~~~~~~ 544 (953)
.-.-+...++. +.+|++++.+. -.+.+.... .++... -..||.|.|++....+.
T Consensus 404 npeh~iVCNrs---ntv~imn~qGQ--vVrsfsSGkREgGdFi~------~~lSpkGewiYcigED~------------- 459 (508)
T KOG0275|consen 404 NPEHFIVCNRS---NTVYIMNMQGQ--VVRSFSSGKREGGDFIN------AILSPKGEWIYCIGEDG------------- 459 (508)
T ss_pred CCceEEEEcCC---CeEEEEeccce--EEeeeccCCccCCceEE------EEecCCCcEEEEEccCc-------------
Confidence 54433333433 36999998873 122222221 222211 45799999988776432
Q ss_pred CCCCCCCCeEEEEECCCCceEEE
Q 002209 545 ATPEGNIPFLDLFDINTGSKERI 567 (953)
Q Consensus 545 ~~~~~~~~~L~~~d~~~~~~~~l 567 (953)
.||-+...+|+.++.
T Consensus 460 --------vlYCF~~~sG~LE~t 474 (508)
T KOG0275|consen 460 --------VLYCFSVLSGKLERT 474 (508)
T ss_pred --------EEEEEEeecCceeee
Confidence 488888888877654
No 251
>PF08450 SGL: SMP-30/Gluconolaconase/LRE-like region; InterPro: IPR013658 This family describes a region that is found in proteins expressed by a variety of eukaryotic and prokaryotic species. These proteins include various enzymes, such as senescence marker protein 30 (SMP-30, Q15493 from SWISSPROT), gluconolactonase (Q01578 from SWISSPROT) and luciferin-regenerating enzyme (LRE, Q86DU5 from SWISSPROT). SMP-30 is known to hydrolyse diisopropyl phosphorofluoridate in the liver, and has been noted as having sequence similarity, in the region described in this family, with PON1 (P52430 from SWISSPROT) and LRE. ; PDB: 2GHS_A 2DG0_L 2DG1_D 2DSO_D 3E5Z_A 2IAT_A 2IAV_A 2GVV_A 3HLI_A 2GVU_A ....
Probab=98.35 E-value=0.00016 Score=75.69 Aligned_cols=143 Identities=18% Similarity=0.242 Sum_probs=84.8
Q ss_pred cceEEEEEc-CCceeEeCCCCcccccccC-CCCcEEEEEEecCCccccccCCCCCcceEEEeccCceEEEeccCCCcccC
Q 002209 313 TTQLVLVSL-DGTVKEIGPPAVYTSLDPS-PDEKYILISSIHRPYSFIVPCGRFPRQVGVWTTDGIFVRELCDLPLAEDI 390 (953)
Q Consensus 313 ~~~l~~~~~-~g~~~~l~~~~~~~~~~~S-pDG~~l~~~~~~~~~~~~~~~~~~~~~i~~~d~~g~~~~~l~~~~~~~~~ 390 (953)
.++|++++. +++.+.+..+. ..++.+. +||+. ++... ..+.++|.++++.+.+....... .
T Consensus 21 ~~~i~~~~~~~~~~~~~~~~~-~~G~~~~~~~g~l-~v~~~--------------~~~~~~d~~~g~~~~~~~~~~~~-~ 83 (246)
T PF08450_consen 21 GGRIYRVDPDTGEVEVIDLPG-PNGMAFDRPDGRL-YVADS--------------GGIAVVDPDTGKVTVLADLPDGG-V 83 (246)
T ss_dssp TTEEEEEETTTTEEEEEESSS-EEEEEEECTTSEE-EEEET--------------TCEEEEETTTTEEEEEEEEETTC-S
T ss_pred CCEEEEEECCCCeEEEEecCC-CceEEEEccCCEE-EEEEc--------------CceEEEecCCCcEEEEeeccCCC-c
Confidence 368999999 66665554443 4455666 67654 44431 25667788888777766642110 0
Q ss_pred CccccccccCccceeeccCCCCceEEEEeccCCCcccccccCCeEEEEecCCCCCCCceEEeecccccCCeeeccCCceE
Q 002209 391 PIAFNSVRKGMRSINWRSDKPSTLYWAETQDGGDAKVEVTPRDIIYTQQAEPVQGEGPEILHKLDLRYGGISWCDDSLAL 470 (953)
Q Consensus 391 p~~~~~~~~~~~~~~wspDg~~i~~~~~~~~~~~~~~~~~~~~~l~~~d~~~~~g~~~~~l~~~~~~~~~~~~SpDg~~l 470 (953)
....+..+++.|||+ +|.++........ ...+.+|.++. + ++...+...-...++++|+|||+.|
T Consensus 84 ------~~~~~ND~~vd~~G~--ly~t~~~~~~~~~---~~~g~v~~~~~---~-~~~~~~~~~~~~pNGi~~s~dg~~l 148 (246)
T PF08450_consen 84 ------PFNRPNDVAVDPDGN--LYVTDSGGGGASG---IDPGSVYRIDP---D-GKVTVVADGLGFPNGIAFSPDGKTL 148 (246)
T ss_dssp ------CTEEEEEEEE-TTS---EEEEEECCBCTTC---GGSEEEEEEET---T-SEEEEEEEEESSEEEEEEETTSSEE
T ss_pred ------ccCCCceEEEcCCCC--EEEEecCCCcccc---ccccceEEECC---C-CeEEEEecCcccccceEECCcchhe
Confidence 113445789999998 4443322111100 11167999984 4 5555555555556789999999998
Q ss_pred EEEEecccCceEEEEEcCCC
Q 002209 471 VYESWYKTRRTRTWVISPGS 490 (953)
Q Consensus 471 ~~~~~~~~~~~~l~~~d~~~ 490 (953)
++..... .+||.++.+.
T Consensus 149 yv~ds~~---~~i~~~~~~~ 165 (246)
T PF08450_consen 149 YVADSFN---GRIWRFDLDA 165 (246)
T ss_dssp EEEETTT---TEEEEEEEET
T ss_pred eeccccc---ceeEEEeccc
Confidence 8764332 3799888864
No 252
>KOG0283 consensus WD40 repeat-containing protein [Function unknown]
Probab=98.34 E-value=2.8e-05 Score=88.29 Aligned_cols=154 Identities=15% Similarity=0.180 Sum_probs=88.7
Q ss_pred ceeEeCCCCcccccccCC-CCcEEEEEEecCCccccccCCCCCcceEEEeccCceEEEeccCCCcccCCccccccccCcc
Q 002209 324 TVKEIGPPAVYTSLDPSP-DEKYILISSIHRPYSFIVPCGRFPRQVGVWTTDGIFVRELCDLPLAEDIPIAFNSVRKGMR 402 (953)
Q Consensus 324 ~~~~l~~~~~~~~~~~Sp-DG~~l~~~~~~~~~~~~~~~~~~~~~i~~~d~~g~~~~~l~~~~~~~~~p~~~~~~~~~~~ 402 (953)
-++.+..+..++.++|.| |-++++-.+.+ +.+.+|++...++...++.. .-+.
T Consensus 402 CL~~F~HndfVTcVaFnPvDDryFiSGSLD-------------~KvRiWsI~d~~Vv~W~Dl~-------------~lIT 455 (712)
T KOG0283|consen 402 CLKVFSHNDFVTCVAFNPVDDRYFISGSLD-------------GKVRLWSISDKKVVDWNDLR-------------DLIT 455 (712)
T ss_pred eeeEEecCCeeEEEEecccCCCcEeecccc-------------cceEEeecCcCeeEeehhhh-------------hhhe
Confidence 344444558999999999 77777666644 49999999877666555433 2346
Q ss_pred ceeeccCCCCceEEEEeccCCCcccccccCCeEEEEecCCCCCCCceE---E--ee----cccccCCeeeccC-CceEEE
Q 002209 403 SINWRSDKPSTLYWAETQDGGDAKVEVTPRDIIYTQQAEPVQGEGPEI---L--HK----LDLRYGGISWCDD-SLALVY 472 (953)
Q Consensus 403 ~~~wspDg~~i~~~~~~~~~~~~~~~~~~~~~l~~~d~~~~~g~~~~~---l--~~----~~~~~~~~~~SpD-g~~l~~ 472 (953)
++.|+|||+..+.. .-.+..++|+. .+-+.+. + .. ....+.++.|.|- -..|+.
T Consensus 456 Avcy~PdGk~avIG-------------t~~G~C~fY~t---~~lk~~~~~~I~~~~~Kk~~~~rITG~Q~~p~~~~~vLV 519 (712)
T KOG0283|consen 456 AVCYSPDGKGAVIG-------------TFNGYCRFYDT---EGLKLVSDFHIRLHNKKKKQGKRITGLQFFPGDPDEVLV 519 (712)
T ss_pred eEEeccCCceEEEE-------------EeccEEEEEEc---cCCeEEEeeeEeeccCccccCceeeeeEecCCCCCeEEE
Confidence 78999999977665 22334455542 2211110 1 10 0124667777753 335666
Q ss_pred EEecccCceEEEEEcCCCCCCCcEEeecCCCccccCCCCCCCeEeccCCCEEEEEee
Q 002209 473 ESWYKTRRTRTWVISPGSKDVAPRILFDRSSEDVYSDPGSPMMRRTSTGTYVIAKIK 529 (953)
Q Consensus 473 ~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~SpDG~~l~~~~~ 529 (953)
++++. +|.++|.... +....+..... ....-..+|+.||++|+....
T Consensus 520 TSnDS----rIRI~d~~~~--~lv~KfKG~~n----~~SQ~~Asfs~Dgk~IVs~se 566 (712)
T KOG0283|consen 520 TSNDS----RIRIYDGRDK--DLVHKFKGFRN----TSSQISASFSSDGKHIVSASE 566 (712)
T ss_pred ecCCC----ceEEEeccch--hhhhhhccccc----CCcceeeeEccCCCEEEEeec
Confidence 65543 6777776432 22222221110 001111579999999999873
No 253
>KOG2394 consensus WD40 protein DMR-N9 [General function prediction only]
Probab=98.34 E-value=1.8e-05 Score=84.93 Aligned_cols=91 Identities=13% Similarity=0.145 Sum_probs=59.9
Q ss_pred CcccccccCCCCcEEEEEEecCCccccccCCCCCcceEEEeccCceEEEeccCCCcccCCccccccccCccceeeccCCC
Q 002209 332 AVYTSLDPSPDEKYILISSIHRPYSFIVPCGRFPRQVGVWTTDGIFVRELCDLPLAEDIPIAFNSVRKGMRSINWRSDKP 411 (953)
Q Consensus 332 ~~~~~~~~SpDG~~l~~~~~~~~~~~~~~~~~~~~~i~~~d~~g~~~~~l~~~~~~~~~p~~~~~~~~~~~~~~wspDg~ 411 (953)
+.+..++|||||++||.++.+. -+.+++.+..+..-+.. +..+|..-+.||||||
T Consensus 291 g~in~f~FS~DG~~LA~VSqDG-------------fLRvF~fdt~eLlg~mk------------SYFGGLLCvcWSPDGK 345 (636)
T KOG2394|consen 291 GSINEFAFSPDGKYLATVSQDG-------------FLRIFDFDTQELLGVMK------------SYFGGLLCVCWSPDGK 345 (636)
T ss_pred ccccceeEcCCCceEEEEecCc-------------eEEEeeccHHHHHHHHH------------hhccceEEEEEcCCcc
Confidence 5678899999999999999654 67777777544332222 2234445689999999
Q ss_pred CceEEEEeccCCCcccccccCCeEEEEecCCCCCCCceEEe---ecccccCCeeecc
Q 002209 412 STLYWAETQDGGDAKVEVTPRDIIYTQQAEPVQGEGPEILH---KLDLRYGGISWCD 465 (953)
Q Consensus 412 ~i~~~~~~~~~~~~~~~~~~~~~l~~~d~~~~~g~~~~~l~---~~~~~~~~~~~Sp 465 (953)
.|+.. ++++.|-+|.+ . +.+.+. .+...+..++|.|
T Consensus 346 yIvtG-------------GEDDLVtVwSf---~--erRVVARGqGHkSWVs~VaFDp 384 (636)
T KOG2394|consen 346 YIVTG-------------GEDDLVTVWSF---E--ERRVVARGQGHKSWVSVVAFDP 384 (636)
T ss_pred EEEec-------------CCcceEEEEEe---c--cceEEEeccccccceeeEeecc
Confidence 88765 55666667765 2 223332 3344566677766
No 254
>KOG0319 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=98.33 E-value=4.1e-05 Score=85.41 Aligned_cols=192 Identities=17% Similarity=0.166 Sum_probs=119.7
Q ss_pred eEeccCCCeEEEEEeeccccCCCCcceEEEEECCCCceeecccCCCccccccccceEEecCCeEEEEEecCCCCCCCCCC
Q 002209 194 VTWSQDGKHLAFSIRIDAEDSSSSKLRVWVADVDTGKARPLFQSPDIYLNAIFDNFVWVNNSTLLVCTIPLLRGDPPKKP 273 (953)
Q Consensus 194 ~~wSPDG~~laf~~~~~~~~~~~~~~~l~~~d~~~g~~~~lt~~~~~~~~~~~~~~~wspDg~~l~~~~~~~~~~~~~~~ 273 (953)
++||++|++|+... +..|-.+|+.++... +....... ...+..++.+||++.|+.+.
T Consensus 25 ~~~s~nG~~L~t~~----------~d~Vi~idv~t~~~~-l~s~~~ed-~d~ita~~l~~d~~~L~~a~----------- 81 (775)
T KOG0319|consen 25 VAWSSNGQHLYTAC----------GDRVIIIDVATGSIA-LPSGSNED-EDEITALALTPDEEVLVTAS----------- 81 (775)
T ss_pred eeECCCCCEEEEec----------CceEEEEEccCCcee-cccCCccc-hhhhheeeecCCccEEEEee-----------
Confidence 89999999887754 456888999998763 32222111 11256888999999988761
Q ss_pred CCCCCCceeecCCCccccchhhhhhcCCcchhhhhhhhccceEEEEEc-CCceeEe--CCC-CcccccccCCCCcEEEEE
Q 002209 274 LVPLGPKMQSNEKRDIIQVRTFQDLLKDEYDEDLFDYYATTQLVLVSL-DGTVKEI--GPP-AVYTSLDPSPDEKYILIS 349 (953)
Q Consensus 274 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~l~~~~~-~g~~~~l--~~~-~~~~~~~~SpDG~~l~~~ 349 (953)
....|-++.+ +|+..+. ..+ +.+...+|+|-|..++..
T Consensus 82 --------------------------------------rs~llrv~~L~tgk~irswKa~He~Pvi~ma~~~~g~LlAtg 123 (775)
T KOG0319|consen 82 --------------------------------------RSQLLRVWSLPTGKLIRSWKAIHEAPVITMAFDPTGTLLATG 123 (775)
T ss_pred --------------------------------------ccceEEEEEcccchHhHhHhhccCCCeEEEEEcCCCceEEec
Confidence 2233445666 7743332 112 566678999999555544
Q ss_pred EecCCccccccCCCCCcceEEEeccCceEE-EeccCCCcccCCccccccccCccceeeccCCCCceEEEEeccCCCcccc
Q 002209 350 SIHRPYSFIVPCGRFPRQVGVWTTDGIFVR-ELCDLPLAEDIPIAFNSVRKGMRSINWRSDKPSTLYWAETQDGGDAKVE 428 (953)
Q Consensus 350 ~~~~~~~~~~~~~~~~~~i~~~d~~g~~~~-~l~~~~~~~~~p~~~~~~~~~~~~~~wspDg~~i~~~~~~~~~~~~~~~ 428 (953)
.. .+.+.+||+.++... .+..+++ -+.++.|.|+-.+-+....
T Consensus 124 ga-------------D~~v~VWdi~~~~~th~fkG~gG-------------vVssl~F~~~~~~~lL~sg---------- 167 (775)
T KOG0319|consen 124 GA-------------DGRVKVWDIKNGYCTHSFKGHGG-------------VVSSLLFHPHWNRWLLASG---------- 167 (775)
T ss_pred cc-------------cceEEEEEeeCCEEEEEecCCCc-------------eEEEEEeCCccchhheeec----------
Confidence 43 348999999866543 3444432 2356788888765222210
Q ss_pred cccCCeEEEEecCCCCCCCc--eEEeecccccCCeeeccCCceEEEEEecccCceEEEEEcCCC
Q 002209 429 VTPRDIIYTQQAEPVQGEGP--EILHKLDLRYGGISWCDDSLALVYESWYKTRRTRTWVISPGS 490 (953)
Q Consensus 429 ~~~~~~l~~~d~~~~~g~~~--~~l~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~l~~~d~~~ 490 (953)
.....+++|++ ..+.. ..+..+...+.++++++|+..+++.+.++ -++++|+..
T Consensus 168 -~~D~~v~vwnl---~~~~tcl~~~~~H~S~vtsL~~~~d~~~~ls~~RDk----vi~vwd~~~ 223 (775)
T KOG0319|consen 168 -ATDGTVRVWNL---NDKRTCLHTMILHKSAVTSLAFSEDSLELLSVGRDK----VIIVWDLVQ 223 (775)
T ss_pred -CCCceEEEEEc---ccCchHHHHHHhhhhheeeeeeccCCceEEEeccCc----EEEEeehhh
Confidence 33557889986 32222 22345566778899999999999886554 344555533
No 255
>KOG2048 consensus WD40 repeat protein [General function prediction only]
Probab=98.33 E-value=0.0013 Score=73.22 Aligned_cols=156 Identities=18% Similarity=0.166 Sum_probs=95.8
Q ss_pred CCCCceecCCCCEEEEEecCCCCCccccccccceeceEEecCCCCCCcceeeeeceEEEEccCCCCCCceeeeecCCCCC
Q 002209 110 PLPALSFSPQRDKILFLKRRALPPLEELARPEEKLAGLRIDGKCNTRSRMSFYTGIGIHQLFPDGKLGQEIEIQGFPDGA 189 (953)
Q Consensus 110 ~~~~~~~SPDG~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~i~~~~~~g~~~~~~~l~~~~~~~ 189 (953)
.+.++++|.+.+.||.+..+ ++|-||++..+ .-....|.+ +...
T Consensus 27 ~I~slA~s~kS~~lAvsRt~---------------------------------g~IEiwN~~~~--w~~~~vi~g-~~dr 70 (691)
T KOG2048|consen 27 EIVSLAYSHKSNQLAVSRTD---------------------------------GNIEIWNLSNN--WFLEPVIHG-PEDR 70 (691)
T ss_pred ceEEEEEeccCCceeeeccC---------------------------------CcEEEEccCCC--ceeeEEEec-CCCC
Confidence 45678889998888887764 36788888541 123455554 4444
Q ss_pred cccceEeccCCCeEEEEEeeccccCCCCcceEEEEECCCCceeecccCCCccccccccceEEecCCeEEEEEecCCCCCC
Q 002209 190 KLNFVTWSQDGKHLAFSIRIDAEDSSSSKLRVWVADVDTGKARPLFQSPDIYLNAIFDNFVWVNNSTLLVCTIPLLRGDP 269 (953)
Q Consensus 190 ~~~~~~wSPDG~~laf~~~~~~~~~~~~~~~l~~~d~~~g~~~~lt~~~~~~~~~~~~~~~wspDg~~l~~~~~~~~~~~ 269 (953)
.+....|++ |.+|.-.. ....|--||+.+++.+.-....... +-+.+..|-++.+++..
T Consensus 71 sIE~L~W~e-~~RLFS~g---------~sg~i~EwDl~~lk~~~~~d~~gg~----IWsiai~p~~~~l~Igc------- 129 (691)
T KOG2048|consen 71 SIESLAWAE-GGRLFSSG---------LSGSITEWDLHTLKQKYNIDSNGGA----IWSIAINPENTILAIGC------- 129 (691)
T ss_pred ceeeEEEcc-CCeEEeec---------CCceEEEEecccCceeEEecCCCcc----eeEEEeCCccceEEeec-------
Confidence 889999995 44554422 3568888898887765443322211 33444446666666551
Q ss_pred CCCCCCCCCCceeecCCCccccchhhhhhcCCcchhhhhhhhccceEEEEEc-CCcee--E-eCCC-CcccccccCCCCc
Q 002209 270 PKKPLVPLGPKMQSNEKRDIIQVRTFQDLLKDEYDEDLFDYYATTQLVLVSL-DGTVK--E-IGPP-AVYTSLDPSPDEK 344 (953)
Q Consensus 270 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~l~~~~~-~g~~~--~-l~~~-~~~~~~~~SpDG~ 344 (953)
..+.|+.++. .++.+ + +... +.+-+++|+|+|.
T Consensus 130 ------------------------------------------ddGvl~~~s~~p~~I~~~r~l~rq~sRvLslsw~~~~~ 167 (691)
T KOG2048|consen 130 ------------------------------------------DDGVLYDFSIGPDKITYKRSLMRQKSRVLSLSWNPTGT 167 (691)
T ss_pred ------------------------------------------CCceEEEEecCCceEEEEeecccccceEEEEEecCCcc
Confidence 1123444444 33221 1 1122 5677899999999
Q ss_pred EEEEEEecCCccccccCCCCCcceEEEeccCce
Q 002209 345 YILISSIHRPYSFIVPCGRFPRQVGVWTTDGIF 377 (953)
Q Consensus 345 ~l~~~~~~~~~~~~~~~~~~~~~i~~~d~~g~~ 377 (953)
+|+-.+.+. -|.+||+..+.
T Consensus 168 ~i~~Gs~Dg-------------~Iriwd~~~~~ 187 (691)
T KOG2048|consen 168 KIAGGSIDG-------------VIRIWDVKSGQ 187 (691)
T ss_pred EEEecccCc-------------eEEEEEcCCCc
Confidence 999887543 69999998443
No 256
>KOG0639 consensus Transducin-like enhancer of split protein (contains WD40 repeats) [Chromatin structure and dynamics]
Probab=98.32 E-value=9.5e-06 Score=86.01 Aligned_cols=227 Identities=14% Similarity=0.036 Sum_probs=137.1
Q ss_pred CCCCCCceecCCCCEEEEEecCCCCCccccccccceeceEEecCCCCCCcceeeeeceEEEEccCCCCCCceeeeecCCC
Q 002209 108 APPLPALSFSPQRDKILFLKRRALPPLEELARPEEKLAGLRIDGKCNTRSRMSFYTGIGIHQLFPDGKLGQEIEIQGFPD 187 (953)
Q Consensus 108 ~~~~~~~~~SPDG~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~i~~~~~~g~~~~~~~l~~~~~ 187 (953)
.-.++...++|||+.|+..... ..|-|||+... ..+.-..++.
T Consensus 465 dnyiRSckL~pdgrtLivGGea---------------------------------stlsiWDLAap----Tprikaelts 507 (705)
T KOG0639|consen 465 DNYIRSCKLLPDGRTLIVGGEA---------------------------------STLSIWDLAAP----TPRIKAELTS 507 (705)
T ss_pred ccceeeeEecCCCceEEecccc---------------------------------ceeeeeeccCC----CcchhhhcCC
Confidence 3357788899999998875432 36789999541 1111112333
Q ss_pred CC-cccceEeccCCCeEEEEEeeccccCCCCcceEEEEECCCCc-eeecccCCCccccccccceEEecCCeEEEEEecCC
Q 002209 188 GA-KLNFVTWSQDGKHLAFSIRIDAEDSSSSKLRVWVADVDTGK-ARPLFQSPDIYLNAIFDNFVWVNNSTLLVCTIPLL 265 (953)
Q Consensus 188 ~~-~~~~~~wSPDG~~laf~~~~~~~~~~~~~~~l~~~d~~~g~-~~~lt~~~~~~~~~~~~~~~wspDg~~l~~~~~~~ 265 (953)
.. .....+.|||.+ |+|..- ...+|.+||+.... .+++-.+.++ +..+..++||..|+....+
T Consensus 508 sapaCyALa~spDak-vcFscc--------sdGnI~vwDLhnq~~VrqfqGhtDG-----ascIdis~dGtklWTGGlD- 572 (705)
T KOG0639|consen 508 SAPACYALAISPDAK-VCFSCC--------SDGNIAVWDLHNQTLVRQFQGHTDG-----ASCIDISKDGTKLWTGGLD- 572 (705)
T ss_pred cchhhhhhhcCCccc-eeeeec--------cCCcEEEEEcccceeeecccCCCCC-----ceeEEecCCCceeecCCCc-
Confidence 23 677889999987 667553 14567777776644 4455444433 6678899999999854110
Q ss_pred CCCCCCCCCCCCCCceeecCCCccccchhhhhhcCCcchhhhhhhhccceEEEEEc-CCc-eeEeCCCCcccccccCCCC
Q 002209 266 RGDPPKKPLVPLGPKMQSNEKRDIIQVRTFQDLLKDEYDEDLFDYYATTQLVLVSL-DGT-VKEIGPPAVYTSLDPSPDE 343 (953)
Q Consensus 266 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~l~~~~~-~g~-~~~l~~~~~~~~~~~SpDG 343 (953)
..+.-+|+ +|. +.+-.-...+.++..+|.|
T Consensus 573 ------------------------------------------------ntvRcWDlregrqlqqhdF~SQIfSLg~cP~~ 604 (705)
T KOG0639|consen 573 ------------------------------------------------NTVRCWDLREGRQLQQHDFSSQIFSLGYCPTG 604 (705)
T ss_pred ------------------------------------------------cceeehhhhhhhhhhhhhhhhhheecccCCCc
Confidence 12334455 442 2221111456778889999
Q ss_pred cEEEEEEecCCccccccCCCCCcceEEEeccCceEEEeccCCCcccCCccccccccCccceeeccCCCCceEEEEeccCC
Q 002209 344 KYILISSIHRPYSFIVPCGRFPRQVGVWTTDGIFVRELCDLPLAEDIPIAFNSVRKGMRSINWRSDKPSTLYWAETQDGG 423 (953)
Q Consensus 344 ~~l~~~~~~~~~~~~~~~~~~~~~i~~~d~~g~~~~~l~~~~~~~~~p~~~~~~~~~~~~~~wspDg~~i~~~~~~~~~~ 423 (953)
.||++.... .++++....+.+..+|..+.. -+-++.|++=|+..+-.
T Consensus 605 dWlavGMen-------------s~vevlh~skp~kyqlhlheS-------------cVLSlKFa~cGkwfvSt------- 651 (705)
T KOG0639|consen 605 DWLAVGMEN-------------SNVEVLHTSKPEKYQLHLHES-------------CVLSLKFAYCGKWFVST------- 651 (705)
T ss_pred cceeeeccc-------------CcEEEEecCCccceeeccccc-------------EEEEEEecccCceeeec-------
Confidence 999998743 388888888877777766532 13578899989854333
Q ss_pred CcccccccCCeEEEEecCCCCCCCceEEeecccccCCeeeccCCceEEEEEec
Q 002209 424 DAKVEVTPRDIIYTQQAEPVQGEGPEILHKLDLRYGGISWCDDSLALVYESWY 476 (953)
Q Consensus 424 ~~~~~~~~~~~l~~~d~~~~~g~~~~~l~~~~~~~~~~~~SpDg~~l~~~~~~ 476 (953)
+.++.+-.|.. | -|... .-.+....+.+...|-|.++||..+.+
T Consensus 652 ------GkDnlLnawrt-P-yGasi-FqskE~SsVlsCDIS~ddkyIVTGSGd 695 (705)
T KOG0639|consen 652 ------GKDNLLNAWRT-P-YGASI-FQSKESSSVLSCDISFDDKYIVTGSGD 695 (705)
T ss_pred ------CchhhhhhccC-c-cccce-eeccccCcceeeeeccCceEEEecCCC
Confidence 22333333331 1 12221 122333445567788899999887654
No 257
>cd00707 Pancreat_lipase_like Pancreatic lipase-like enzymes. Lipases are esterases that can hydrolyze long-chain acyl-triglycerides into di- and monoglycerides, glycerol, and free fatty acids at a water/lipid interface. A typical feature of lipases is "interfacial activation," the process of becoming active at the lipid/water interface, although several examples of lipases have been identified that do not undergo interfacial activation . The active site of a lipase contains a catalytic triad consisting of Ser - His - Asp/Glu, but unlike most serine proteases, the active site is buried inside the structure. A "lid" or "flap" covers the active site, making it inaccessible to solvent and substrates. The lid opens during the process of interfacial activation, allowing the lipid substrate access to the active site.
Probab=98.32 E-value=4.5e-06 Score=88.35 Aligned_cols=108 Identities=11% Similarity=-0.092 Sum_probs=72.2
Q ss_pred ccEEEEeCCCCCcCcCCCCcccCCCCCCCCccchHHHHHH-HcCcEEEEcCCCCCCCCCChhh--hhhhHHHHHHHHHHH
Q 002209 670 LPCLFWSYPGEFKSKDAAGQVRGSPNEFPRIGSTSVLLWL-ARGFAILGGPTTPIIGEGDEEA--NDRFVEQLVACAEAA 746 (953)
Q Consensus 670 ~P~vv~~hGg~~~~~~~~~~~~~~~~~~~~~~~~~~~~la-~~G~~V~~~~~~~~~G~G~~~~--~~~~~~~~~~D~~~~ 746 (953)
.|++|++||.... ....+.......++ ..+|.|+.+|..+. +.... ..........++...
T Consensus 36 ~p~vilIHG~~~~-------------~~~~~~~~l~~~ll~~~~~nVi~vD~~~~---~~~~y~~a~~~~~~v~~~la~~ 99 (275)
T cd00707 36 RPTRFIIHGWTSS-------------GEESWISDLRKAYLSRGDYNVIVVDWGRG---ANPNYPQAVNNTRVVGAELAKF 99 (275)
T ss_pred CCcEEEEcCCCCC-------------CCCcHHHHHHHHHHhcCCCEEEEEECccc---cccChHHHHHhHHHHHHHHHHH
Confidence 5889999995311 00111122233344 46899999766432 21111 111223345677888
Q ss_pred HHHHHHcCCCCCCcEEEEEeChHHHHHHHHHHhCCCcccEEEEcccC
Q 002209 747 VEEVVRRGVAHPSKIAVGGHSYGAFMTANLLAHAPHLFCCGIARSGA 793 (953)
Q Consensus 747 ~~~l~~~~~~d~~~i~l~G~S~GG~~a~~~a~~~p~~~~a~v~~~~~ 793 (953)
+++|.+...++.+++.|+||||||.++..++.+.|++++.++...|.
T Consensus 100 l~~L~~~~g~~~~~i~lIGhSlGa~vAg~~a~~~~~~v~~iv~LDPa 146 (275)
T cd00707 100 LDFLVDNTGLSLENVHLIGHSLGAHVAGFAGKRLNGKLGRITGLDPA 146 (275)
T ss_pred HHHHHHhcCCChHHEEEEEecHHHHHHHHHHHHhcCccceeEEecCC
Confidence 88887764466789999999999999999999999999999998875
No 258
>COG1073 Hydrolases of the alpha/beta superfamily [General function prediction only]
Probab=98.32 E-value=2.8e-06 Score=92.04 Aligned_cols=78 Identities=23% Similarity=0.402 Sum_probs=62.2
Q ss_pred HHhcCcccccCCCC-CcEEEEEeCCCCCCCCchHHHHHHHHHHHhCCCcEEEEEeCCCCccCCCcc--cHHHHHHHHHHH
Q 002209 817 YVEMSPFMSANKLK-KPILLVHGEEDNNSGTLTMQSDRFFNALKGHGALCRLVILPFESHGYAARE--SIMHVLWETDRW 893 (953)
Q Consensus 817 ~~~~sp~~~~~~i~-~P~Li~~G~~D~~v~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~H~~~~~~--~~~~~~~~i~~f 893 (953)
+...++...+.++. .|+|++||..|..|| ...+..++.+.+.. +.+..++++++|...... .....+..+.+|
T Consensus 218 ~~~~d~~~~~~~i~~~P~l~~~G~~D~~vp--~~~~~~~~~~~~~~--~~~~~~~~~~~H~~~~~~~~~~~~~~~~~~~f 293 (299)
T COG1073 218 LLLLDPFDDAEKISPRPVLLVHGERDEVVP--LRDAEDLYEAARER--PKKLLFVPGGGHIDLYDNPPAVEQALDKLAEF 293 (299)
T ss_pred hccCcchhhHhhcCCcceEEEecCCCcccc--hhhhHHHHhhhccC--CceEEEecCCccccccCccHHHHHHHHHHHHH
Confidence 44556666677777 699999999999999 99999999998875 578888999999876422 234788899999
Q ss_pred HHHhc
Q 002209 894 LQKYC 898 (953)
Q Consensus 894 l~~~l 898 (953)
|.+++
T Consensus 294 ~~~~l 298 (299)
T COG1073 294 LERHL 298 (299)
T ss_pred HHHhc
Confidence 99875
No 259
>PF07433 DUF1513: Protein of unknown function (DUF1513); InterPro: IPR008311 There are currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=98.32 E-value=0.00044 Score=71.79 Aligned_cols=226 Identities=16% Similarity=0.125 Sum_probs=126.7
Q ss_pred ccceEecc-CCCeEEEEEeeccccCCCCcceEEEEECCCCceeecccCCCccccccccceEEecCCeEEEEEecCCCCCC
Q 002209 191 LNFVTWSQ-DGKHLAFSIRIDAEDSSSSKLRVWVADVDTGKARPLFQSPDIYLNAIFDNFVWVNNSTLLVCTIPLLRGDP 269 (953)
Q Consensus 191 ~~~~~wSP-DG~~laf~~~~~~~~~~~~~~~l~~~d~~~g~~~~lt~~~~~~~~~~~~~~~wspDg~~l~~~~~~~~~~~ 269 (953)
...+..+| ++.-++|.++ . ..-++++|..+|+..+....+..+. ......||+||++||.+-
T Consensus 7 gH~~a~~p~~~~avafaRR-P-------G~~~~v~D~~~g~~~~~~~a~~gRH--FyGHg~fs~dG~~LytTE------- 69 (305)
T PF07433_consen 7 GHGVAAHPTRPEAVAFARR-P-------GTFALVFDCRTGQLLQRLWAPPGRH--FYGHGVFSPDGRLLYTTE------- 69 (305)
T ss_pred ccceeeCCCCCeEEEEEeC-C-------CcEEEEEEcCCCceeeEEcCCCCCE--EecCEEEcCCCCEEEEec-------
Confidence 45678889 5566666554 2 4578899999988765444443321 134788999999999761
Q ss_pred CCCCCCCCCCceeecCCCccccchhhhhhcCCcchhhhhhhhccceEEEEEcCCceeEeC---CC-CcccccccCCCCcE
Q 002209 270 PKKPLVPLGPKMQSNEKRDIIQVRTFQDLLKDEYDEDLFDYYATTQLVLVSLDGTVKEIG---PP-AVYTSLDPSPDEKY 345 (953)
Q Consensus 270 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~l~~~~~~g~~~~l~---~~-~~~~~~~~SpDG~~ 345 (953)
+..+ .+.+.|-++|.....+++. .. -+.-.+.|.|||+.
T Consensus 70 -------------------------------nd~~------~g~G~IgVyd~~~~~~ri~E~~s~GIGPHel~l~pDG~t 112 (305)
T PF07433_consen 70 -------------------------------NDYE------TGRGVIGVYDAARGYRRIGEFPSHGIGPHELLLMPDGET 112 (305)
T ss_pred -------------------------------cccC------CCcEEEEEEECcCCcEEEeEecCCCcChhhEEEcCCCCE
Confidence 1111 1556788888843333333 22 34457889999999
Q ss_pred EEEEEec---CCcc--ccccCCCCCcceEEEeccCceEEEeccCCCcccCCccccccccCccceeeccCCCCceEEEEec
Q 002209 346 ILISSIH---RPYS--FIVPCGRFPRQVGVWTTDGIFVRELCDLPLAEDIPIAFNSVRKGMRSINWRSDKPSTLYWAETQ 420 (953)
Q Consensus 346 l~~~~~~---~~~~--~~~~~~~~~~~i~~~d~~g~~~~~l~~~~~~~~~p~~~~~~~~~~~~~~wspDg~~i~~~~~~~ 420 (953)
|++.... .|.. .+........++...|..++++..-...+.. -....+|-++|++||. +++..+.+
T Consensus 113 LvVANGGI~Thpd~GR~kLNl~tM~psL~~ld~~sG~ll~q~~Lp~~--------~~~lSiRHLa~~~~G~-V~~a~Q~q 183 (305)
T PF07433_consen 113 LVVANGGIETHPDSGRAKLNLDTMQPSLVYLDARSGALLEQVELPPD--------LHQLSIRHLAVDGDGT-VAFAMQYQ 183 (305)
T ss_pred EEEEcCCCccCcccCceecChhhcCCceEEEecCCCceeeeeecCcc--------ccccceeeEEecCCCc-EEEEEecC
Confidence 9887532 1111 1111122233566665554443322111100 1123467899999986 34433322
Q ss_pred cCCCcccccccCCeEEEEecCCCCCCCceEEeec-------ccccCCeeeccCCceEEEEEecccCceEEEEEcCCCC
Q 002209 421 DGGDAKVEVTPRDIIYTQQAEPVQGEGPEILHKL-------DLRYGGISWCDDSLALVYESWYKTRRTRTWVISPGSK 491 (953)
Q Consensus 421 ~~~~~~~~~~~~~~l~~~d~~~~~g~~~~~l~~~-------~~~~~~~~~SpDg~~l~~~~~~~~~~~~l~~~d~~~~ 491 (953)
+... .....+.+.+ .++..+.+... ...+.++++++||+.++.++.+.+ .+.++|..++
T Consensus 184 -g~~~----~~~PLva~~~----~g~~~~~~~~p~~~~~~l~~Y~gSIa~~~~g~~ia~tsPrGg---~~~~~d~~tg 249 (305)
T PF07433_consen 184 -GDPG----DAPPLVALHR----RGGALRLLPAPEEQWRRLNGYIGSIAADRDGRLIAVTSPRGG---RVAVWDAATG 249 (305)
T ss_pred -CCCC----ccCCeEEEEc----CCCcceeccCChHHHHhhCCceEEEEEeCCCCEEEEECCCCC---EEEEEECCCC
Confidence 1110 1122455554 23334433221 344667999999999998876653 4666677765
No 260
>COG4757 Predicted alpha/beta hydrolase [General function prediction only]
Probab=98.32 E-value=5.8e-06 Score=79.83 Aligned_cols=221 Identities=17% Similarity=0.129 Sum_probs=126.9
Q ss_pred EEEEcCCCcEEEEEEEcCCCCCCCCCCCccEEEEeCCCCCcCcCCCCcccCCCCCCCCccchHHHHHHHcCcEEEEcCCC
Q 002209 642 IKYQRKDGVQLSATLYLPPGYDPSKDGPLPCLFWSYPGEFKSKDAAGQVRGSPNEFPRIGSTSVLLWLARGFAILGGPTT 721 (953)
Q Consensus 642 ~~~~~~dg~~~~~~l~~P~~~~~~~~~~~P~vv~~hGg~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~G~~V~~~~~~ 721 (953)
..+...||..+.+.+|--.+ +.+-.+++-|++.. ...++..++...+++||.|++.+|
T Consensus 8 ~~l~~~DG~~l~~~~~pA~~-------~~~g~~~va~a~Gv--------------~~~fYRrfA~~a~~~Gf~Vlt~dy- 65 (281)
T COG4757 8 AHLPAPDGYSLPGQRFPADG-------KASGRLVVAGATGV--------------GQYFYRRFAAAAAKAGFEVLTFDY- 65 (281)
T ss_pred cccccCCCccCccccccCCC-------CCCCcEEecccCCc--------------chhHhHHHHHHhhccCceEEEEec-
Confidence 56777899999999984332 13323333333210 112234556667789999999555
Q ss_pred CCCCCCChhhh------hhhHHHHHHHHHHHHHHHHHcCCCCCCcEEEEEeChHHHHHHHHHHhCCCcccEE-EEcccC-
Q 002209 722 PIIGEGDEEAN------DRFVEQLVACAEAAVEEVVRRGVAHPSKIAVGGHSYGAFMTANLLAHAPHLFCCG-IARSGA- 793 (953)
Q Consensus 722 ~~~G~G~~~~~------~~~~~~~~~D~~~~~~~l~~~~~~d~~~i~l~G~S~GG~~a~~~a~~~p~~~~a~-v~~~~~- 793 (953)
+|.|++... -.+.+-...|+.++++++.+.. ...+...+|||+||.+...+. +++ ++.+. |..++.
T Consensus 66 --RG~g~S~p~~~~~~~~~~~DwA~~D~~aal~~~~~~~--~~~P~y~vgHS~GGqa~gL~~-~~~-k~~a~~vfG~gag 139 (281)
T COG4757 66 --RGIGQSRPASLSGSQWRYLDWARLDFPAALAALKKAL--PGHPLYFVGHSFGGQALGLLG-QHP-KYAAFAVFGSGAG 139 (281)
T ss_pred --ccccCCCccccccCccchhhhhhcchHHHHHHHHhhC--CCCceEEeeccccceeecccc-cCc-ccceeeEeccccc
Confidence 566665321 2345667889999999998742 235789999999998866554 443 33322 222221
Q ss_pred -CCCC---------------CCCc------------Cccc-ccchhhhhHHHHHh------cCcc-----cccCCCCCcE
Q 002209 794 -YNRT---------------LTPF------------GFQN-EDRTLWEATSTYVE------MSPF-----MSANKLKKPI 833 (953)
Q Consensus 794 -~d~~---------------~~~~------------~~~~-~~~~~~~~~~~~~~------~sp~-----~~~~~i~~P~ 833 (953)
.-+. ..+. ++.. .......+-..+.+ .+|. +..+++.+|+
T Consensus 140 wsg~m~~~~~l~~~~l~~lv~p~lt~w~g~~p~~l~G~G~d~p~~v~RdW~RwcR~p~y~fddp~~~~~~q~yaaVrtPi 219 (281)
T COG4757 140 WSGWMGLRERLGAVLLWNLVGPPLTFWKGYMPKDLLGLGSDLPGTVMRDWARWCRHPRYYFDDPAMRNYRQVYAAVRTPI 219 (281)
T ss_pred cccchhhhhcccceeeccccccchhhccccCcHhhcCCCccCcchHHHHHHHHhcCccccccChhHhHHHHHHHHhcCce
Confidence 1100 0000 0000 00011111111111 1221 2235678999
Q ss_pred EEEEeCCCCCCCCchHHHHHHHHHHHhCCCcEEEEEeCCC----CccCCCcccHHHHHHHHHHHH
Q 002209 834 LLVHGEEDNNSGTLTMQSDRFFNALKGHGALCRLVILPFE----SHGYAARESIMHVLWETDRWL 894 (953)
Q Consensus 834 Li~~G~~D~~v~~~~~~~~~~~~~l~~~g~~~~~~~~~~~----~H~~~~~~~~~~~~~~i~~fl 894 (953)
..+.-.+|+-+| +.....+......+ +.+...++.+ ||.-...+..+...+++++||
T Consensus 220 ~~~~~~DD~w~P--~As~d~f~~~y~nA--pl~~~~~~~~~~~lGH~gyfR~~~Ealwk~~L~w~ 280 (281)
T COG4757 220 TFSRALDDPWAP--PASRDAFASFYRNA--PLEMRDLPRAEGPLGHMGYFREPFEALWKEMLGWF 280 (281)
T ss_pred eeeccCCCCcCC--HHHHHHHHHhhhcC--cccceecCcccCcccchhhhccchHHHHHHHHHhh
Confidence 999999999998 77666776666544 5677777754 887544444577788888886
No 261
>PF06057 VirJ: Bacterial virulence protein (VirJ); InterPro: IPR010333 This entry contains several bacterial VirJ virulence proteins. VirJ is thought to be involved in the type IV secretion system. It is thought that the substrate proteins localised to the periplasm may associate with the pilus in a manner that is mediated by VirJ, and suggest a two-step process for type IV secretion in Agrobacterium [].
Probab=98.29 E-value=1.5e-05 Score=76.25 Aligned_cols=170 Identities=15% Similarity=0.136 Sum_probs=105.8
Q ss_pred CCCccchHHHHHHHcCcEEEEcCCCCCCCCCChhhhhhhHHHHHHHHHHHHHHHHHcCCCCCCcEEEEEeChHHHHHHHH
Q 002209 697 FPRIGSTSVLLWLARGFAILGGPTTPIIGEGDEEANDRFVEQLVACAEAAVEEVVRRGVAHPSKIAVGGHSYGAFMTANL 776 (953)
Q Consensus 697 ~~~~~~~~~~~la~~G~~V~~~~~~~~~G~G~~~~~~~~~~~~~~D~~~~~~~l~~~~~~d~~~i~l~G~S~GG~~a~~~ 776 (953)
|.......+..|+++|+.|+..|..- .+.....-++...|+.+.+++..++-. .+++.|+|+|+|+-+.-.+
T Consensus 14 w~~~d~~~a~~l~~~G~~VvGvdsl~------Yfw~~rtP~~~a~Dl~~~i~~y~~~w~--~~~vvLiGYSFGADvlP~~ 85 (192)
T PF06057_consen 14 WRDLDKQIAEALAKQGVPVVGVDSLR------YFWSERTPEQTAADLARIIRHYRARWG--RKRVVLIGYSFGADVLPFI 85 (192)
T ss_pred chhhhHHHHHHHHHCCCeEEEechHH------HHhhhCCHHHHHHHHHHHHHHHHHHhC--CceEEEEeecCCchhHHHH
Confidence 44445677888999999999955421 123344457788999999998887743 4699999999999888888
Q ss_pred HHhCCC----cccEEEEcccCCCC--CCCCcCcccccchhhhhHHHHHhcCcccccCCCC-CcEEEEEeCCCCCCCCchH
Q 002209 777 LAHAPH----LFCCGIARSGAYNR--TLTPFGFQNEDRTLWEATSTYVEMSPFMSANKLK-KPILLVHGEEDNNSGTLTM 849 (953)
Q Consensus 777 a~~~p~----~~~a~v~~~~~~d~--~~~~~~~~~~~~~~~~~~~~~~~~sp~~~~~~i~-~P~Li~~G~~D~~v~~~~~ 849 (953)
..+.|. +++.++++++.... .....++.... ... ..+.+...+.++. .|++.+.|++|.-..|+.
T Consensus 86 ~nrLp~~~r~~v~~v~Ll~p~~~~dFeihv~~wlg~~-----~~~--~~~~~~pei~~l~~~~v~CiyG~~E~d~~cp~- 157 (192)
T PF06057_consen 86 YNRLPAALRARVAQVVLLSPSTTADFEIHVSGWLGMG-----GDD--AAYPVIPEIAKLPPAPVQCIYGEDEDDSLCPS- 157 (192)
T ss_pred HhhCCHHHHhheeEEEEeccCCcceEEEEhhhhcCCC-----CCc--ccCCchHHHHhCCCCeEEEEEcCCCCCCcCcc-
Confidence 887774 57777777664221 11100000000 000 0123444455564 489999998776433211
Q ss_pred HHHHHHHHHHhCCCcEEEEEeCCCCccCCCcccHHHHHHHHHHHHH
Q 002209 850 QSDRFFNALKGHGALCRLVILPFESHGYAARESIMHVLWETDRWLQ 895 (953)
Q Consensus 850 ~~~~~~~~l~~~g~~~~~~~~~~~~H~~~~~~~~~~~~~~i~~fl~ 895 (953)
++. ..++.+.+|| ||.|. .+...+.+.|++-++
T Consensus 158 --------l~~--~~~~~i~lpG-gHHfd--~dy~~La~~Il~~l~ 190 (192)
T PF06057_consen 158 --------LRQ--PGVEVIALPG-GHHFD--GDYDALAKRILDALK 190 (192)
T ss_pred --------ccC--CCcEEEEcCC-CcCCC--CCHHHHHHHHHHHHh
Confidence 222 3468888998 77773 345566666666554
No 262
>PF08450 SGL: SMP-30/Gluconolaconase/LRE-like region; InterPro: IPR013658 This family describes a region that is found in proteins expressed by a variety of eukaryotic and prokaryotic species. These proteins include various enzymes, such as senescence marker protein 30 (SMP-30, Q15493 from SWISSPROT), gluconolactonase (Q01578 from SWISSPROT) and luciferin-regenerating enzyme (LRE, Q86DU5 from SWISSPROT). SMP-30 is known to hydrolyse diisopropyl phosphorofluoridate in the liver, and has been noted as having sequence similarity, in the region described in this family, with PON1 (P52430 from SWISSPROT) and LRE. ; PDB: 2GHS_A 2DG0_L 2DG1_D 2DSO_D 3E5Z_A 2IAT_A 2IAV_A 2GVV_A 3HLI_A 2GVU_A ....
Probab=98.29 E-value=0.00013 Score=76.34 Aligned_cols=213 Identities=19% Similarity=0.116 Sum_probs=120.0
Q ss_pred ceEEEEccCCCCCCceeeeecCCCCCcccceEec-cCCCeEEEEEeeccccCCCCcceEEEEECCCCceeecccCCCcc-
Q 002209 164 GIGIHQLFPDGKLGQEIEIQGFPDGAKLNFVTWS-QDGKHLAFSIRIDAEDSSSSKLRVWVADVDTGKARPLFQSPDIY- 241 (953)
Q Consensus 164 ~i~i~~~~~~g~~~~~~~l~~~~~~~~~~~~~wS-PDG~~laf~~~~~~~~~~~~~~~l~~~d~~~g~~~~lt~~~~~~- 241 (953)
.|+.++..+ +....+. ++. .....+. +|| .|+++. ...+.++|+++++.+.+.......
T Consensus 23 ~i~~~~~~~----~~~~~~~-~~~---~~G~~~~~~~g-~l~v~~----------~~~~~~~d~~~g~~~~~~~~~~~~~ 83 (246)
T PF08450_consen 23 RIYRVDPDT----GEVEVID-LPG---PNGMAFDRPDG-RLYVAD----------SGGIAVVDPDTGKVTVLADLPDGGV 83 (246)
T ss_dssp EEEEEETTT----TEEEEEE-SSS---EEEEEEECTTS-EEEEEE----------TTCEEEEETTTTEEEEEEEEETTCS
T ss_pred EEEEEECCC----CeEEEEe-cCC---CceEEEEccCC-EEEEEE----------cCceEEEecCCCcEEEEeeccCCCc
Confidence 567777632 3332222 332 3445555 665 455543 345566699998877776542111
Q ss_pred ccccccceEEecCCeEEEEEecCCCCCCCCCCCCCCCCceeecCCCccccchhhhhhcCCcchhhhhhhhccceEEEEEc
Q 002209 242 LNAIFDNFVWVNNSTLLVCTIPLLRGDPPKKPLVPLGPKMQSNEKRDIIQVRTFQDLLKDEYDEDLFDYYATTQLVLVSL 321 (953)
Q Consensus 242 ~~~~~~~~~wspDg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~l~~~~~ 321 (953)
.......+++.|||+ |+++....... ... ..+.||+++.
T Consensus 84 ~~~~~ND~~vd~~G~-ly~t~~~~~~~--------------------------------~~~--------~~g~v~~~~~ 122 (246)
T PF08450_consen 84 PFNRPNDVAVDPDGN-LYVTDSGGGGA--------------------------------SGI--------DPGSVYRIDP 122 (246)
T ss_dssp CTEEEEEEEE-TTS--EEEEEECCBCT--------------------------------TCG--------GSEEEEEEET
T ss_pred ccCCCceEEEcCCCC-EEEEecCCCcc--------------------------------ccc--------cccceEEECC
Confidence 112256888999998 66662211110 000 1167999998
Q ss_pred CCceeEeCCC-CcccccccCCCCcEEEEEEecCCccccccCCCCCcceEEEecc--Cce---EEEeccCCCcccCCcccc
Q 002209 322 DGTVKEIGPP-AVYTSLDPSPDEKYILISSIHRPYSFIVPCGRFPRQVGVWTTD--GIF---VRELCDLPLAEDIPIAFN 395 (953)
Q Consensus 322 ~g~~~~l~~~-~~~~~~~~SpDG~~l~~~~~~~~~~~~~~~~~~~~~i~~~d~~--g~~---~~~l~~~~~~~~~p~~~~ 395 (953)
+|+.+.+... .....++|||||+.|+++... .+.|+.++++ ++. .+.+...+...
T Consensus 123 ~~~~~~~~~~~~~pNGi~~s~dg~~lyv~ds~------------~~~i~~~~~~~~~~~~~~~~~~~~~~~~~------- 183 (246)
T PF08450_consen 123 DGKVTVVADGLGFPNGIAFSPDGKTLYVADSF------------NGRIWRFDLDADGGELSNRRVFIDFPGGP------- 183 (246)
T ss_dssp TSEEEEEEEEESSEEEEEEETTSSEEEEEETT------------TTEEEEEEEETTTCCEEEEEEEEE-SSSS-------
T ss_pred CCeEEEEecCcccccceEECCcchheeecccc------------cceeEEEeccccccceeeeeeEEEcCCCC-------
Confidence 8777766655 666789999999998876522 3479999986 331 22232222111
Q ss_pred ccccCccceeeccCCCCceEEEEeccCCCcccccccCCeEEEEecCCCCCCCceEEeecccccCCeee-ccCCceEEEEE
Q 002209 396 SVRKGMRSINWRSDKPSTLYWAETQDGGDAKVEVTPRDIIYTQQAEPVQGEGPEILHKLDLRYGGISW-CDDSLALVYES 474 (953)
Q Consensus 396 ~~~~~~~~~~wspDg~~i~~~~~~~~~~~~~~~~~~~~~l~~~d~~~~~g~~~~~l~~~~~~~~~~~~-SpDg~~l~~~~ 474 (953)
..+..+++..||+ +|... ...+.|++++. +|.....+.-+......++| .+|.+.|+.++
T Consensus 184 ---g~pDG~~vD~~G~--l~va~-----------~~~~~I~~~~p---~G~~~~~i~~p~~~~t~~~fgg~~~~~L~vTt 244 (246)
T PF08450_consen 184 ---GYPDGLAVDSDGN--LWVAD-----------WGGGRIVVFDP---DGKLLREIELPVPRPTNCAFGGPDGKTLYVTT 244 (246)
T ss_dssp ---CEEEEEEEBTTS---EEEEE-----------ETTTEEEEEET---TSCEEEEEE-SSSSEEEEEEESTTSSEEEEEE
T ss_pred ---cCCCcceEcCCCC--EEEEE-----------cCCCEEEEECC---CccEEEEEcCCCCCEEEEEEECCCCCEEEEEe
Confidence 1234688888886 33321 23568899984 54444445444346677888 47778777654
No 263
>KOG1009 consensus Chromatin assembly complex 1 subunit B/CAC2 (contains WD40 repeats) [Chromatin structure and dynamics; Replication, recombination and repair]
Probab=98.27 E-value=3.2e-05 Score=80.37 Aligned_cols=60 Identities=17% Similarity=0.319 Sum_probs=46.7
Q ss_pred CcccceEeccCCCeEEEEEeeccccCCCCcceEEEEECCCCceeecccCCCccccccccceEEecCCeEEEEE
Q 002209 189 AKLNFVTWSQDGKHLAFSIRIDAEDSSSSKLRVWVADVDTGKARPLFQSPDIYLNAIFDNFVWVNNSTLLVCT 261 (953)
Q Consensus 189 ~~~~~~~wSPDG~~laf~~~~~~~~~~~~~~~l~~~d~~~g~~~~lt~~~~~~~~~~~~~~~wspDg~~l~~~ 261 (953)
..+....|+||+..+.+.+ ....++++|+..|............ +..++|.|-++.|+..
T Consensus 124 ~diydL~Ws~d~~~l~s~s---------~dns~~l~Dv~~G~l~~~~~dh~~y----vqgvawDpl~qyv~s~ 183 (434)
T KOG1009|consen 124 DDIYDLAWSPDSNFLVSGS---------VDNSVRLWDVHAGQLLAILDDHEHY----VQGVAWDPLNQYVASK 183 (434)
T ss_pred cchhhhhccCCCceeeeee---------ccceEEEEEeccceeEeeccccccc----cceeecchhhhhhhhh
Confidence 4788999999999999855 3668888999888876554444332 7789999999988855
No 264
>KOG0278 consensus Serine/threonine kinase receptor-associated protein [Lipid transport and metabolism]
Probab=98.27 E-value=1.5e-05 Score=77.42 Aligned_cols=195 Identities=18% Similarity=0.182 Sum_probs=115.1
Q ss_pred CcccceEeccCCCeEEEEEeeccccCCCCcceEEEEECCCCce--eecccCCCccccccccceEEecCCeEEEEEecCCC
Q 002209 189 AKLNFVTWSQDGKHLAFSIRIDAEDSSSSKLRVWVADVDTGKA--RPLFQSPDIYLNAIFDNFVWVNNSTLLVCTIPLLR 266 (953)
Q Consensus 189 ~~~~~~~wSPDG~~laf~~~~~~~~~~~~~~~l~~~d~~~g~~--~~lt~~~~~~~~~~~~~~~wspDg~~l~~~~~~~~ 266 (953)
..+...+||.|.++|+.-. ...-|.+.|++.-++ ..+..++. .+..+.|-...+.|+.++
T Consensus 101 hivk~~af~~ds~~lltgg---------~ekllrvfdln~p~App~E~~ghtg-----~Ir~v~wc~eD~~iLSSa---- 162 (334)
T KOG0278|consen 101 HIVKAVAFSQDSNYLLTGG---------QEKLLRVFDLNRPKAPPKEISGHTG-----GIRTVLWCHEDKCILSSA---- 162 (334)
T ss_pred heeeeEEecccchhhhccc---------hHHHhhhhhccCCCCCchhhcCCCC-----cceeEEEeccCceEEeec----
Confidence 3677789999999888732 233455556555433 33333332 267788886666666441
Q ss_pred CCCCCCCCCCCCCceeecCCCccccchhhhhhcCCcchhhhhhhhccceEEEEEc-CC-ceeEeCCCCcccccccCCCCc
Q 002209 267 GDPPKKPLVPLGPKMQSNEKRDIIQVRTFQDLLKDEYDEDLFDYYATTQLVLVSL-DG-TVKEIGPPAVYTSLDPSPDEK 344 (953)
Q Consensus 267 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~l~~~~~-~g-~~~~l~~~~~~~~~~~SpDG~ 344 (953)
....+.++|. +| +++.|..+..+.+..+|+||+
T Consensus 163 ---------------------------------------------dd~tVRLWD~rTgt~v~sL~~~s~VtSlEvs~dG~ 197 (334)
T KOG0278|consen 163 ---------------------------------------------DDKTVRLWDHRTGTEVQSLEFNSPVTSLEVSQDGR 197 (334)
T ss_pred ---------------------------------------------cCCceEEEEeccCcEEEEEecCCCCcceeeccCCC
Confidence 1123445676 76 455666567889999999999
Q ss_pred EEEEEEecCCccccccCCCCCcceEEEeccCceEEEeccCCCcccCCccccccccCccceeeccCCCCceEEEEeccCCC
Q 002209 345 YILISSIHRPYSFIVPCGRFPRQVGVWTTDGIFVRELCDLPLAEDIPIAFNSVRKGMRSINWRSDKPSTLYWAETQDGGD 424 (953)
Q Consensus 345 ~l~~~~~~~~~~~~~~~~~~~~~i~~~d~~g~~~~~l~~~~~~~~~p~~~~~~~~~~~~~~wspDg~~i~~~~~~~~~~~ 424 (953)
.|..+- ...|..||.+.=. .|... .+|. .+.+.+.+|+...++..
T Consensus 198 ilTia~--------------gssV~Fwdaksf~--~lKs~----k~P~-------nV~SASL~P~k~~fVaG-------- 242 (334)
T KOG0278|consen 198 ILTIAY--------------GSSVKFWDAKSFG--LLKSY----KMPC-------NVESASLHPKKEFFVAG-------- 242 (334)
T ss_pred EEEEec--------------CceeEEecccccc--ceeec----cCcc-------ccccccccCCCceEEec--------
Confidence 876553 2267778776321 11111 1222 33456788887432221
Q ss_pred cccccccCCeEEEEecCCCCCCCceEE-eecccccCCeeeccCCceEEEEEecccCceEEEEEcCCC
Q 002209 425 AKVEVTPRDIIYTQQAEPVQGEGPEIL-HKLDLRYGGISWCDDSLALVYESWYKTRRTRTWVISPGS 490 (953)
Q Consensus 425 ~~~~~~~~~~l~~~d~~~~~g~~~~~l-~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~l~~~d~~~ 490 (953)
++...+|.+|. .+|.+.... ..+.+.+-.+.|||||..-+..+.+++ .+||...+..
T Consensus 243 -----ged~~~~kfDy--~TgeEi~~~nkgh~gpVhcVrFSPdGE~yAsGSEDGT--irlWQt~~~~ 300 (334)
T KOG0278|consen 243 -----GEDFKVYKFDY--NTGEEIGSYNKGHFGPVHCVRFSPDGELYASGSEDGT--IRLWQTTPGK 300 (334)
T ss_pred -----CcceEEEEEec--cCCceeeecccCCCCceEEEEECCCCceeeccCCCce--EEEEEecCCC
Confidence 23346777885 233333332 445566778999999985444444443 5899987655
No 265
>PF06342 DUF1057: Alpha/beta hydrolase of unknown function (DUF1057); InterPro: IPR010463 This entry consists of proteins of unknown function which have an alpha/beta hydrolase fold.
Probab=98.25 E-value=5.5e-05 Score=76.45 Aligned_cols=129 Identities=16% Similarity=0.087 Sum_probs=76.9
Q ss_pred EEEEEcCCCcEEEEEEEcCCCCCCCCCCCccEEEEeCCCCCcCcCCCCcccCCCCCCCCccchHHHHHHHcCcEEEEcCC
Q 002209 641 LIKYQRKDGVQLSATLYLPPGYDPSKDGPLPCLFWSYPGEFKSKDAAGQVRGSPNEFPRIGSTSVLLWLARGFAILGGPT 720 (953)
Q Consensus 641 ~~~~~~~dg~~~~~~l~~P~~~~~~~~~~~P~vv~~hGg~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~G~~V~~~~~ 720 (953)
.+.+...+|..+...-.+-+.. ....+..+||-+||.|. +.+.|. .....|.+.|+.++..++
T Consensus 8 ~~k~~~~~~~~~~~~a~y~D~~--~~gs~~gTVv~~hGsPG-----------SH~DFk----Yi~~~l~~~~iR~I~iN~ 70 (297)
T PF06342_consen 8 LVKFQAENGKIVTVQAVYEDSL--PSGSPLGTVVAFHGSPG-----------SHNDFK----YIRPPLDEAGIRFIGINY 70 (297)
T ss_pred EEEcccccCceEEEEEEEEecC--CCCCCceeEEEecCCCC-----------Cccchh----hhhhHHHHcCeEEEEeCC
Confidence 4455555665443332222111 11234679999999873 334453 234467889999999666
Q ss_pred CCCCCCCChhhhhhhHHHHHHHHHHHHHHHHHcCCCCCCcEEEEEeChHHHHHHHHHHhCCCcccEEEEcccC
Q 002209 721 TPIIGEGDEEANDRFVEQLVACAEAAVEEVVRRGVAHPSKIAVGGHSYGAFMTANLLAHAPHLFCCGIARSGA 793 (953)
Q Consensus 721 ~~~~G~G~~~~~~~~~~~~~~D~~~~~~~l~~~~~~d~~~i~l~G~S~GG~~a~~~a~~~p~~~~a~v~~~~~ 793 (953)
.|+|....+..... .-.+-...++.|.+.-.++ +++.++|||.|+-.|+.++..+| ..++++++|+
T Consensus 71 ---PGf~~t~~~~~~~~-~n~er~~~~~~ll~~l~i~-~~~i~~gHSrGcenal~la~~~~--~~g~~lin~~ 136 (297)
T PF06342_consen 71 ---PGFGFTPGYPDQQY-TNEERQNFVNALLDELGIK-GKLIFLGHSRGCENALQLAVTHP--LHGLVLINPP 136 (297)
T ss_pred ---CCCCCCCCCccccc-ChHHHHHHHHHHHHHcCCC-CceEEEEeccchHHHHHHHhcCc--cceEEEecCC
Confidence 45555543321111 1112223344454443454 79999999999999999999985 5677887765
No 266
>COG3208 GrsT Predicted thioesterase involved in non-ribosomal peptide biosynthesis [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=98.24 E-value=2.6e-05 Score=77.28 Aligned_cols=61 Identities=18% Similarity=0.116 Sum_probs=43.0
Q ss_pred CCCCCcEEEEEeCCCCCCCCchHHHHHHHHHHHhCCCcEEEEEeCCCCccCCCcccHHHHHHHHHHHHHHhc
Q 002209 827 NKLKKPILLVHGEEDNNSGTLTMQSDRFFNALKGHGALCRLVILPFESHGYAARESIMHVLWETDRWLQKYC 898 (953)
Q Consensus 827 ~~i~~P~Li~~G~~D~~v~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~H~~~~~~~~~~~~~~i~~fl~~~l 898 (953)
..+.+|+.++.|++|..|. .++...+-+..+ ...++..|+| ||.+.. .. .+.+++++.+++
T Consensus 173 ~pl~~pi~~~~G~~D~~vs--~~~~~~W~~~t~---~~f~l~~fdG-gHFfl~-~~----~~~v~~~i~~~l 233 (244)
T COG3208 173 APLACPIHAFGGEKDHEVS--RDELGAWREHTK---GDFTLRVFDG-GHFFLN-QQ----REEVLARLEQHL 233 (244)
T ss_pred CCcCcceEEeccCcchhcc--HHHHHHHHHhhc---CCceEEEecC-cceehh-hh----HHHHHHHHHHHh
Confidence 3478999999999999987 665555655544 3489999998 998852 23 344555555555
No 267
>KOG0319 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=98.24 E-value=0.00089 Score=75.11 Aligned_cols=363 Identities=12% Similarity=0.085 Sum_probs=197.3
Q ss_pred CCCCceecCCCCEEEEEecCCCCCcccccc-------cc-ceeceEEecCCCC-C----CcceeeeeceEEEEccCCCCC
Q 002209 110 PLPALSFSPQRDKILFLKRRALPPLEELAR-------PE-EKLAGLRIDGKCN-T----RSRMSFYTGIGIHQLFPDGKL 176 (953)
Q Consensus 110 ~~~~~~~SPDG~~la~~~~~~~~~~~~~~~-------~~-~~~~~~~~~~~~~-~----~~~~~~~~~i~i~~~~~~g~~ 176 (953)
.+.++.|++|+.-++++.++...-++++.+ |. ..+.+..+-.++. + ....+..+.+.+||.++ +..
T Consensus 194 ~vtsL~~~~d~~~~ls~~RDkvi~vwd~~~~~~l~~lp~ye~~E~vv~l~~~~~~~~~~~~TaG~~g~~~~~d~es-~~~ 272 (775)
T KOG0319|consen 194 AVTSLAFSEDSLELLSVGRDKVIIVWDLVQYKKLKTLPLYESLESVVRLREELGGKGEYIITAGGSGVVQYWDSES-GKC 272 (775)
T ss_pred heeeeeeccCCceEEEeccCcEEEEeehhhhhhhheechhhheeeEEEechhcCCcceEEEEecCCceEEEEeccc-chh
Confidence 578899999999999998885555555532 11 1122222222211 1 11223335667777632 221
Q ss_pred CceeeeecCCCCCcccceEeccCCCeEEEEEeeccccCCCCcceEEEEECCCCcee-ecccCCCcccccccc-ceEEecC
Q 002209 177 GQEIEIQGFPDGAKLNFVTWSQDGKHLAFSIRIDAEDSSSSKLRVWVADVDTGKAR-PLFQSPDIYLNAIFD-NFVWVNN 254 (953)
Q Consensus 177 ~~~~~l~~~~~~~~~~~~~wSPDG~~laf~~~~~~~~~~~~~~~l~~~d~~~g~~~-~lt~~~~~~~~~~~~-~~~wspD 254 (953)
...++... ...........-+++.|+.+. ..+|+++|.+..+.. ++....+. +- ..-|-|+
T Consensus 273 ~~~~~~~~--~~e~~~~~~~~~~~~~l~vta----------eQnl~l~d~~~l~i~k~ivG~ndE-----I~Dm~~lG~e 335 (775)
T KOG0319|consen 273 VYKQRQSD--SEEIDHLLAIESMSQLLLVTA----------EQNLFLYDEDELTIVKQIVGYNDE-----ILDMKFLGPE 335 (775)
T ss_pred hhhhccCC--chhhhcceeccccCceEEEEc----------cceEEEEEccccEEehhhcCCchh-----heeeeecCCc
Confidence 11111111 111222233344666666654 578999998877653 44333222 33 4446688
Q ss_pred CeEEEEEecCCCCCCCCCCCCCCCCceeecCCCccccchhhhhhcCCcchhhhhhhhccceEEEEEc-CCceeEeCCC-C
Q 002209 255 STLLVCTIPLLRGDPPKKPLVPLGPKMQSNEKRDIIQVRTFQDLLKDEYDEDLFDYYATTQLVLVSL-DGTVKEIGPP-A 332 (953)
Q Consensus 255 g~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~l~~~~~-~g~~~~l~~~-~ 332 (953)
.+.|++++ ....|.++++ +-..+.+... .
T Consensus 336 ~~~laVAT-------------------------------------------------Ns~~lr~y~~~~~~c~ii~GH~e 366 (775)
T KOG0319|consen 336 ESHLAVAT-------------------------------------------------NSPELRLYTLPTSYCQIIPGHTE 366 (775)
T ss_pred cceEEEEe-------------------------------------------------CCCceEEEecCCCceEEEeCchh
Confidence 88999872 2234556677 4444444444 5
Q ss_pred cccccccCCCCcEEEEEEecCCccccccCCCCCcceEEEeccCceEEEeccCCCcccCCccccccccCccceeeccCCCC
Q 002209 333 VYTSLDPSPDEKYILISSIHRPYSFIVPCGRFPRQVGVWTTDGIFVRELCDLPLAEDIPIAFNSVRKGMRSINWRSDKPS 412 (953)
Q Consensus 333 ~~~~~~~SpDG~~l~~~~~~~~~~~~~~~~~~~~~i~~~d~~g~~~~~l~~~~~~~~~p~~~~~~~~~~~~~~wspDg~~ 412 (953)
.+.+++..-+|-+|+..+-+ +.+.+|.++.+..+.+.... -+++...+..++.+..|-.
T Consensus 367 ~vlSL~~~~~g~llat~sKD-------------~svilWr~~~~~~~~~~~a~--------~~gH~~svgava~~~~~as 425 (775)
T KOG0319|consen 367 AVLSLDVWSSGDLLATGSKD-------------KSVILWRLNNNCSKSLCVAQ--------ANGHTNSVGAVAGSKLGAS 425 (775)
T ss_pred heeeeeecccCcEEEEecCC-------------ceEEEEEecCCcchhhhhhh--------hcccccccceeeecccCcc
Confidence 56666655578666655533 37888887544333222111 1122233445666655544
Q ss_pred ceEEEEeccCCCcccccccCCeEEEEecCCC--CCCCceEE------eecccccCCeeeccCCceEEEEEecccCceEEE
Q 002209 413 TLYWAETQDGGDAKVEVTPRDIIYTQQAEPV--QGEGPEIL------HKLDLRYGGISWCDDSLALVYESWYKTRRTRTW 484 (953)
Q Consensus 413 i~~~~~~~~~~~~~~~~~~~~~l~~~d~~~~--~g~~~~~l------~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~l~ 484 (953)
+... .+.+..+-+|++ +. +...+..+ ..++.+++.++.+|+.+.|+..+.+++. +||
T Consensus 426 ffvs------------vS~D~tlK~W~l-~~s~~~~~~~~~~~~~t~~aHdKdIN~Vaia~ndkLiAT~SqDkta--KiW 490 (775)
T KOG0319|consen 426 FFVS------------VSQDCTLKLWDL-PKSKETAFPIVLTCRYTERAHDKDINCVAIAPNDKLIATGSQDKTA--KIW 490 (775)
T ss_pred EEEE------------ecCCceEEEecC-CCcccccccceehhhHHHHhhcccccceEecCCCceEEecccccce--eee
Confidence 3332 134456667776 22 11112222 2457788999999999999888877654 899
Q ss_pred EEcCCCCCCCcEEeecCCCccccCCCCCCCeEeccCCCEEEEEeeeccCCCcEEEEecCCCCCCCCCCeEEEEECCCCce
Q 002209 485 VISPGSKDVAPRILFDRSSEDVYSDPGSPMMRRTSTGTYVIAKIKKENDEGTYILLNGNGATPEGNIPFLDLFDINTGSK 564 (953)
Q Consensus 485 ~~d~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~SpDG~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~d~~~~~~ 564 (953)
.++ +. ........+...++. ++|||..+.++..+.+ ..+..|.+.+..-
T Consensus 491 ~le-~~---~l~~vLsGH~RGvw~------V~Fs~~dq~laT~SgD---------------------~TvKIW~is~fSC 539 (775)
T KOG0319|consen 491 DLE-QL---RLLGVLSGHTRGVWC------VSFSKNDQLLATCSGD---------------------KTVKIWSISTFSC 539 (775)
T ss_pred ccc-Cc---eEEEEeeCCccceEE------EEeccccceeEeccCC---------------------ceEEEEEecccee
Confidence 887 22 333445555555555 8999998888876522 1388888887766
Q ss_pred EEEeccCcccceeeeEeeccCCccccccccCCEEEEEEecCCCCceEEEEECCCCCe
Q 002209 565 ERIWESDKEKYYETTVALMSDQTEGDLYLNQLKILTSKESKTENTQYYIQSWPDKKS 621 (953)
Q Consensus 565 ~~l~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~p~~l~~~~~~~g~~ 621 (953)
..-.++... .+. ..+|-.+|++++- ...-.-+-+|+..+++.
T Consensus 540 lkT~eGH~~----aVl-------ra~F~~~~~qliS----~~adGliKlWnikt~eC 581 (775)
T KOG0319|consen 540 LKTFEGHTS----AVL-------RASFIRNGKQLIS----AGADGLIKLWNIKTNEC 581 (775)
T ss_pred eeeecCccc----eeE-------eeeeeeCCcEEEe----ccCCCcEEEEeccchhh
Confidence 554443321 010 1345566666662 22233466667666654
No 268
>KOG1009 consensus Chromatin assembly complex 1 subunit B/CAC2 (contains WD40 repeats) [Chromatin structure and dynamics; Replication, recombination and repair]
Probab=98.24 E-value=0.00011 Score=76.57 Aligned_cols=110 Identities=19% Similarity=0.305 Sum_probs=70.5
Q ss_pred cCCCCC-cccceEeccCCCeEEEEEeeccccCCCCcceEEEEE------CCC-----Cc---eeecccCCCccccccccc
Q 002209 184 GFPDGA-KLNFVTWSQDGKHLAFSIRIDAEDSSSSKLRVWVAD------VDT-----GK---ARPLFQSPDIYLNAIFDN 248 (953)
Q Consensus 184 ~~~~~~-~~~~~~wSPDG~~laf~~~~~~~~~~~~~~~l~~~d------~~~-----g~---~~~lt~~~~~~~~~~~~~ 248 (953)
.|..+. .++..+|+|+|..||-.. .++..-||... .++ .+ .+...... ...+..
T Consensus 60 ~Ls~H~~aVN~vRf~p~gelLASg~-------D~g~v~lWk~~~~~~~~~d~e~~~~ke~w~v~k~lr~h----~~diyd 128 (434)
T KOG1009|consen 60 SLSRHTRAVNVVRFSPDGELLASGG-------DGGEVFLWKQGDVRIFDADTEADLNKEKWVVKKVLRGH----RDDIYD 128 (434)
T ss_pred cccCCcceeEEEEEcCCcCeeeecC-------CCceEEEEEecCcCCccccchhhhCccceEEEEEeccc----ccchhh
Confidence 344333 789999999999998744 33455556544 122 11 01111111 111557
Q ss_pred eEEecCCeEEEEEecCCCCCCCCCCCCCCCCceeecCCCccccchhhhhhcCCcchhhhhhhhccceEEEEEc-CCceeE
Q 002209 249 FVWVNNSTLLVCTIPLLRGDPPKKPLVPLGPKMQSNEKRDIIQVRTFQDLLKDEYDEDLFDYYATTQLVLVSL-DGTVKE 327 (953)
Q Consensus 249 ~~wspDg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~l~~~~~-~g~~~~ 327 (953)
++|+||+..+++.+ ....++++|+ .|....
T Consensus 129 L~Ws~d~~~l~s~s-------------------------------------------------~dns~~l~Dv~~G~l~~ 159 (434)
T KOG1009|consen 129 LAWSPDSNFLVSGS-------------------------------------------------VDNSVRLWDVHAGQLLA 159 (434)
T ss_pred hhccCCCceeeeee-------------------------------------------------ccceEEEEEeccceeEe
Confidence 89999999998761 2245667788 786655
Q ss_pred eCCC--CcccccccCCCCcEEEEEEecC
Q 002209 328 IGPP--AVYTSLDPSPDEKYILISSIHR 353 (953)
Q Consensus 328 l~~~--~~~~~~~~SpDG~~l~~~~~~~ 353 (953)
+... ..+..++|.|-+++|+..+.++
T Consensus 160 ~~~dh~~yvqgvawDpl~qyv~s~s~dr 187 (434)
T KOG1009|consen 160 ILDDHEHYVQGVAWDPLNQYVASKSSDR 187 (434)
T ss_pred eccccccccceeecchhhhhhhhhccCc
Confidence 5444 7788999999999999887554
No 269
>KOG2106 consensus Uncharacterized conserved protein, contains HELP and WD40 domains [Function unknown]
Probab=98.23 E-value=0.0011 Score=70.97 Aligned_cols=277 Identities=13% Similarity=0.143 Sum_probs=142.7
Q ss_pred eceEEEEccCCCCCCceeeeecCCCCCcccceEeccCCCeEEEEEeeccccCCCCcceEEEEECCCCce-eecccCCCcc
Q 002209 163 TGIGIHQLFPDGKLGQEIEIQGFPDGAKLNFVTWSQDGKHLAFSIRIDAEDSSSSKLRVWVADVDTGKA-RPLFQSPDIY 241 (953)
Q Consensus 163 ~~i~i~~~~~~g~~~~~~~l~~~~~~~~~~~~~wSPDG~~laf~~~~~~~~~~~~~~~l~~~d~~~g~~-~~lt~~~~~~ 241 (953)
+.|+.|+... |.+.+.+.+-.-.+...+....|.+||+.|- ++.+..|.+|+..+... +++..++.+
T Consensus 222 ~H~~Fw~~~~-~~l~k~~~~fek~ekk~Vl~v~F~engdviT----------gDS~G~i~Iw~~~~~~~~k~~~aH~gg- 289 (626)
T KOG2106|consen 222 GHLYFWTLRG-GSLVKRQGIFEKREKKFVLCVTFLENGDVIT----------GDSGGNILIWSKGTNRISKQVHAHDGG- 289 (626)
T ss_pred ceEEEEEccC-CceEEEeeccccccceEEEEEEEcCCCCEEe----------ecCCceEEEEeCCCceEEeEeeecCCc-
Confidence 4788998853 4333333332222223778889999998653 44577888888766543 233233322
Q ss_pred ccccccceEEecCCeEEEEEecCCCCC-------CCCCCCCC--CCCceeecCCCccccchhhhhhcCCcchhhhhhhhc
Q 002209 242 LNAIFDNFVWVNNSTLLVCTIPLLRGD-------PPKKPLVP--LGPKMQSNEKRDIIQVRTFQDLLKDEYDEDLFDYYA 312 (953)
Q Consensus 242 ~~~~~~~~~wspDg~~l~~~~~~~~~~-------~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~ 312 (953)
+..+.-.-||+.|- ...+.... ..+..+.| .|+.....+++ +.++.-..
T Consensus 290 ----v~~L~~lr~GtllS-GgKDRki~~Wd~~y~k~r~~elPe~~G~iRtv~e~~-----------------~di~vGTt 347 (626)
T KOG2106|consen 290 ----VFSLCMLRDGTLLS-GGKDRKIILWDDNYRKLRETELPEQFGPIRTVAEGK-----------------GDILVGTT 347 (626)
T ss_pred ----eEEEEEecCccEee-cCccceEEeccccccccccccCchhcCCeeEEecCC-----------------CcEEEeec
Confidence 55666666776554 21111100 01111111 11111111110 00110001
Q ss_pred cceEEEEEc-CC-ceeEeCCCCcccccccCCCCcEEEEEEecCCccccccCCCCCcceEEEeccCceEEEeccCCCcccC
Q 002209 313 TTQLVLVSL-DG-TVKEIGPPAVYTSLDPSPDEKYILISSIHRPYSFIVPCGRFPRQVGVWTTDGIFVRELCDLPLAEDI 390 (953)
Q Consensus 313 ~~~l~~~~~-~g-~~~~l~~~~~~~~~~~SpDG~~l~~~~~~~~~~~~~~~~~~~~~i~~~d~~g~~~~~l~~~~~~~~~ 390 (953)
+..|..=++ ++ .............++..|+...++....+ +.+.+|+-..-+...+...+
T Consensus 348 rN~iL~Gt~~~~f~~~v~gh~delwgla~hps~~q~~T~gqd-------------k~v~lW~~~k~~wt~~~~d~----- 409 (626)
T KOG2106|consen 348 RNFILQGTLENGFTLTVQGHGDELWGLATHPSKNQLLTCGQD-------------KHVRLWNDHKLEWTKIIEDP----- 409 (626)
T ss_pred cceEEEeeecCCceEEEEecccceeeEEcCCChhheeeccCc-------------ceEEEccCCceeEEEEecCc-----
Confidence 122333334 33 22222222455677888888877766644 38889983222333333322
Q ss_pred CccccccccCccceeeccCCCCceEEEEeccCCCcccccccCCeEEEEecCCCCCCCceEEeecccccCCeeeccCCceE
Q 002209 391 PIAFNSVRKGMRSINWRSDKPSTLYWAETQDGGDAKVEVTPRDIIYTQQAEPVQGEGPEILHKLDLRYGGISWCDDSLAL 470 (953)
Q Consensus 391 p~~~~~~~~~~~~~~wspDg~~i~~~~~~~~~~~~~~~~~~~~~l~~~d~~~~~g~~~~~l~~~~~~~~~~~~SpDg~~l 470 (953)
.....|.|-| .++.. ...++.+++|. +......+.......+.+.|||||..|
T Consensus 410 ----------~~~~~fhpsg-~va~G-------------t~~G~w~V~d~---e~~~lv~~~~d~~~ls~v~ysp~G~~l 462 (626)
T KOG2106|consen 410 ----------AECADFHPSG-VVAVG-------------TATGRWFVLDT---ETQDLVTIHTDNEQLSVVRYSPDGAFL 462 (626)
T ss_pred ----------eeEeeccCcc-eEEEe-------------eccceEEEEec---ccceeEEEEecCCceEEEEEcCCCCEE
Confidence 1356789988 56555 34567888885 333333343335566778999999999
Q ss_pred EEEEecccCceEEEEEcCCCCCCCcEEeecCCCccccCCCCCCCeEeccCCCEEEEEe
Q 002209 471 VYESWYKTRRTRTWVISPGSKDVAPRILFDRSSEDVYSDPGSPMMRRTSTGTYVIAKI 528 (953)
Q Consensus 471 ~~~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~SpDG~~l~~~~ 528 (953)
+..+.++- .-||+++.++. +-..+-.-....+.- +-||+|++++...+
T Consensus 463 Avgs~d~~--iyiy~Vs~~g~--~y~r~~k~~gs~ith------LDwS~Ds~~~~~~S 510 (626)
T KOG2106|consen 463 AVGSHDNH--IYIYRVSANGR--KYSRVGKCSGSPITH------LDWSSDSQFLVSNS 510 (626)
T ss_pred EEecCCCe--EEEEEECCCCc--EEEEeeeecCceeEE------eeecCCCceEEecc
Confidence 99876542 35777776653 111111111111111 67999999987665
No 270
>KOG0643 consensus Translation initiation factor 3, subunit i (eIF-3i)/TGF-beta receptor-interacting protein (TRIP-1) [Translation, ribosomal structure and biogenesis; Signal transduction mechanisms]
Probab=98.22 E-value=0.00032 Score=69.16 Aligned_cols=182 Identities=11% Similarity=0.065 Sum_probs=108.2
Q ss_pred eEeccCCCeEEEEEeeccccCCCCcceEEEEECCCCceeecccCCCccccccccceEEecCCeEEEEEecCCCCCCCCCC
Q 002209 194 VTWSQDGKHLAFSIRIDAEDSSSSKLRVWVADVDTGKARPLFQSPDIYLNAIFDNFVWVNNSTLLVCTIPLLRGDPPKKP 273 (953)
Q Consensus 194 ~~wSPDG~~laf~~~~~~~~~~~~~~~l~~~d~~~g~~~~lt~~~~~~~~~~~~~~~wspDg~~l~~~~~~~~~~~~~~~ 273 (953)
....-|.++++. +.....+.+||+++|+.......+.. +..+.|+.+|.++++++...-+.
T Consensus 58 ~Did~~s~~liT---------GSAD~t~kLWDv~tGk~la~~k~~~~-----Vk~~~F~~~gn~~l~~tD~~mg~----- 118 (327)
T KOG0643|consen 58 CDIDWDSKHLIT---------GSADQTAKLWDVETGKQLATWKTNSP-----VKRVDFSFGGNLILASTDKQMGY----- 118 (327)
T ss_pred EEecCCcceeee---------ccccceeEEEEcCCCcEEEEeecCCe-----eEEEeeccCCcEEEEEehhhcCc-----
Confidence 333445677766 44567788889999987655443432 77899999999988873321111
Q ss_pred CCCCCCceeecCCCccccchhhhhhcCCcchhhhhhhhccceEEEEEc--------CCc-eeEeCCC-CcccccccCCCC
Q 002209 274 LVPLGPKMQSNEKRDIIQVRTFQDLLKDEYDEDLFDYYATTQLVLVSL--------DGT-VKEIGPP-AVYTSLDPSPDE 343 (953)
Q Consensus 274 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~l~~~~~--------~g~-~~~l~~~-~~~~~~~~SpDG 343 (953)
...+..+++ +.+ ...|..+ ..++..-|+|-|
T Consensus 119 ---------------------------------------~~~v~~fdi~~~~~~~~s~ep~~kI~t~~skit~a~Wg~l~ 159 (327)
T KOG0643|consen 119 ---------------------------------------TCFVSVFDIRDDSSDIDSEEPYLKIPTPDSKITSALWGPLG 159 (327)
T ss_pred ---------------------------------------ceEEEEEEccCChhhhcccCceEEecCCccceeeeeecccC
Confidence 122333333 112 3344444 667888999999
Q ss_pred cEEEEEEecCCccccccCCCCCcceEEEeccCc-eEEEeccCCCcccCCccccccccCccceeeccCCCCceEEEEeccC
Q 002209 344 KYILISSIHRPYSFIVPCGRFPRQVGVWTTDGI-FVRELCDLPLAEDIPIAFNSVRKGMRSINWRSDKPSTLYWAETQDG 422 (953)
Q Consensus 344 ~~l~~~~~~~~~~~~~~~~~~~~~i~~~d~~g~-~~~~l~~~~~~~~~p~~~~~~~~~~~~~~wspDg~~i~~~~~~~~~ 422 (953)
+.|+..-.+ +.|-.||+.++ +....... +...+.++.+|+|... |.+.
T Consensus 160 ~~ii~Ghe~-------------G~is~~da~~g~~~v~s~~~------------h~~~Ind~q~s~d~T~--FiT~---- 208 (327)
T KOG0643|consen 160 ETIIAGHED-------------GSISIYDARTGKELVDSDEE------------HSSKINDLQFSRDRTY--FITG---- 208 (327)
T ss_pred CEEEEecCC-------------CcEEEEEcccCceeeechhh------------hccccccccccCCcce--EEec----
Confidence 999887633 38999999854 33322111 1124567899999874 3322
Q ss_pred CCcccccccCCeEEEEecCCCCCCCceEEeecccccCCeeeccCCceEEEEE
Q 002209 423 GDAKVEVTPRDIIYTQQAEPVQGEGPEILHKLDLRYGGISWCDDSLALVYES 474 (953)
Q Consensus 423 ~~~~~~~~~~~~l~~~d~~~~~g~~~~~l~~~~~~~~~~~~SpDg~~l~~~~ 474 (953)
+......++|. ..-+...-...+..++..+++|--..++...
T Consensus 209 -------s~Dttakl~D~---~tl~v~Kty~te~PvN~aaisP~~d~VilgG 250 (327)
T KOG0643|consen 209 -------SKDTTAKLVDV---RTLEVLKTYTTERPVNTAAISPLLDHVILGG 250 (327)
T ss_pred -------ccCccceeeec---cceeeEEEeeecccccceecccccceEEecC
Confidence 22334456664 2111112223455677889999877777654
No 271
>PF06821 Ser_hydrolase: Serine hydrolase; InterPro: IPR010662 This family contains a number of hypothetical bacterial proteins of unknown function, which may be cytosolic. The Crystal Structure Of The Yden Gene Product Swiss:P96671 from B. Subtilis has been solved. The structure shows an alpha-beta hydrolase fold suggesting an enzymatic function for these proteins [].; GO: 0016787 hydrolase activity; PDB: 3BDV_B 2QS9_A 1UXO_A.
Probab=98.20 E-value=1.5e-05 Score=77.26 Aligned_cols=99 Identities=16% Similarity=0.167 Sum_probs=67.0
Q ss_pred CcEEEEEeChHHHHHHHHH-HhCCCcccEEEEcccCCCCCCCCcCcccccchhhhhHHHHHhcCcccccCCCCCcEEEEE
Q 002209 759 SKIAVGGHSYGAFMTANLL-AHAPHLFCCGIARSGAYNRTLTPFGFQNEDRTLWEATSTYVEMSPFMSANKLKKPILLVH 837 (953)
Q Consensus 759 ~~i~l~G~S~GG~~a~~~a-~~~p~~~~a~v~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~sp~~~~~~i~~P~Li~~ 837 (953)
+.+.++|||+|..+++.++ .+....++++++++|+..... ....... ....+. ....+..|.+++.
T Consensus 55 ~~~ilVaHSLGc~~~l~~l~~~~~~~v~g~lLVAp~~~~~~--~~~~~~~----------~~f~~~-p~~~l~~~~~via 121 (171)
T PF06821_consen 55 EPTILVAHSLGCLTALRWLAEQSQKKVAGALLVAPFDPDDP--EPFPPEL----------DGFTPL-PRDPLPFPSIVIA 121 (171)
T ss_dssp TTEEEEEETHHHHHHHHHHHHTCCSSEEEEEEES--SCGCH--HCCTCGG----------CCCTTS-HCCHHHCCEEEEE
T ss_pred CCeEEEEeCHHHHHHHHHHhhcccccccEEEEEcCCCcccc--cchhhhc----------cccccC-cccccCCCeEEEE
Confidence 4699999999999999999 667788999999999743100 0000000 001111 0112346679999
Q ss_pred eCCCCCCCCchHHHHHHHHHHHhCCCcEEEEEeCCCCccC
Q 002209 838 GEEDNNSGTLTMQSDRFFNALKGHGALCRLVILPFESHGY 877 (953)
Q Consensus 838 G~~D~~v~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~H~~ 877 (953)
+++|+.|| +..+.++.+++.. +++.++++||..
T Consensus 122 S~nDp~vp--~~~a~~~A~~l~a-----~~~~~~~~GHf~ 154 (171)
T PF06821_consen 122 SDNDPYVP--FERAQRLAQRLGA-----ELIILGGGGHFN 154 (171)
T ss_dssp ETTBSSS---HHHHHHHHHHHT------EEEEETS-TTSS
T ss_pred cCCCCccC--HHHHHHHHHHcCC-----CeEECCCCCCcc
Confidence 99999999 9999999998853 799999999965
No 272
>KOG0277 consensus Peroxisomal targeting signal type 2 receptor [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.19 E-value=6e-05 Score=73.60 Aligned_cols=257 Identities=14% Similarity=0.145 Sum_probs=140.9
Q ss_pred eceEEEEccCCCCCCceeeeecCCCCCcccceEeccCCCeEEEEEeeccccCCCCcceEEEEECCCCceeecccCCCccc
Q 002209 163 TGIGIHQLFPDGKLGQEIEIQGFPDGAKLNFVTWSQDGKHLAFSIRIDAEDSSSSKLRVWVADVDTGKARPLFQSPDIYL 242 (953)
Q Consensus 163 ~~i~i~~~~~~g~~~~~~~l~~~~~~~~~~~~~wSPDG~~laf~~~~~~~~~~~~~~~l~~~d~~~g~~~~lt~~~~~~~ 242 (953)
+.|+|.++.+.+.. +.+..+........++||+.-..++++.. ++|..+||-..... .+.+........
T Consensus 38 G~L~ile~~~~~gi---~e~~s~d~~D~LfdV~Wse~~e~~~~~a~------GDGSLrl~d~~~~s-~Pi~~~kEH~~E- 106 (311)
T KOG0277|consen 38 GRLFILEVTDPKGI---QECQSYDTEDGLFDVAWSENHENQVIAAS------GDGSLRLFDLTMPS-KPIHKFKEHKRE- 106 (311)
T ss_pred ceEEEEecCCCCCe---EEEEeeecccceeEeeecCCCcceEEEEe------cCceEEEeccCCCC-cchhHHHhhhhh-
Confidence 46899988422211 22222222235788999999888888765 44555555422222 222222222222
Q ss_pred cccccceEEecCCeEEEEEecCCCCCCCCCCCCCCCCceeecCCCccccchhhhhhcCCcchhhhhhhhccceEEEEEcC
Q 002209 243 NAIFDNFVWVNNSTLLVCTIPLLRGDPPKKPLVPLGPKMQSNEKRDIIQVRTFQDLLKDEYDEDLFDYYATTQLVLVSLD 322 (953)
Q Consensus 243 ~~~~~~~~wspDg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~l~~~~~~ 322 (953)
+.++.|.+-.+.++.++ . -| ++-.||.-+..
T Consensus 107 ---V~Svdwn~~~r~~~lts-S--------------------------------------WD-------~TiKLW~~~r~ 137 (311)
T KOG0277|consen 107 ---VYSVDWNTVRRRIFLTS-S--------------------------------------WD-------GTIKLWDPNRP 137 (311)
T ss_pred ---eEEeccccccceeEEee-c--------------------------------------cC-------CceEeecCCCC
Confidence 67889997666666551 1 11 33445544443
Q ss_pred CceeEeCCC-CcccccccCC-CCcEEEEEEecCCccccccCCCCCcceEEEecc--CceEEEeccCCCcccCCccccccc
Q 002209 323 GTVKEIGPP-AVYTSLDPSP-DEKYILISSIHRPYSFIVPCGRFPRQVGVWTTD--GIFVRELCDLPLAEDIPIAFNSVR 398 (953)
Q Consensus 323 g~~~~l~~~-~~~~~~~~Sp-DG~~l~~~~~~~~~~~~~~~~~~~~~i~~~d~~--g~~~~~l~~~~~~~~~p~~~~~~~ 398 (953)
..++..... .-+....||| ++..++..+.+ +.+.+||+. |+... +..+.
T Consensus 138 ~Sv~Tf~gh~~~Iy~a~~sp~~~nlfas~Sgd-------------~~l~lwdvr~~gk~~~-i~ah~------------- 190 (311)
T KOG0277|consen 138 NSVQTFNGHNSCIYQAAFSPHIPNLFASASGD-------------GTLRLWDVRSPGKFMS-IEAHN------------- 190 (311)
T ss_pred cceEeecCCccEEEEEecCCCCCCeEEEccCC-------------ceEEEEEecCCCceeE-EEecc-------------
Confidence 333334434 6677889999 56666666644 378899987 33222 33222
Q ss_pred cCccceeeccCCCCceEEEEeccCCCcccccccCCeEEEEecCCCCCCCceEEeecccccCCeeeccCCceEEEEEeccc
Q 002209 399 KGMRSINWRSDKPSTLYWAETQDGGDAKVEVTPRDIIYTQQAEPVQGEGPEILHKLDLRYGGISWCDDSLALVYESWYKT 478 (953)
Q Consensus 399 ~~~~~~~wspDg~~i~~~~~~~~~~~~~~~~~~~~~l~~~d~~~~~g~~~~~l~~~~~~~~~~~~SpDg~~l~~~~~~~~ 478 (953)
..+....|+.=...+++. + +..+.|+.||+.... ...-.|..+...+..+.|||--..|+.+...+
T Consensus 191 ~Eil~cdw~ky~~~vl~T-----g-------~vd~~vr~wDir~~r-~pl~eL~gh~~AVRkvk~Sph~~~lLaSasYD- 256 (311)
T KOG0277|consen 191 SEILCCDWSKYNHNVLAT-----G-------GVDNLVRGWDIRNLR-TPLFELNGHGLAVRKVKFSPHHASLLASASYD- 256 (311)
T ss_pred ceeEeecccccCCcEEEe-----c-------CCCceEEEEehhhcc-ccceeecCCceEEEEEecCcchhhHhhhcccc-
Confidence 112345687766667665 1 335678899972221 11233566777888999999988877766655
Q ss_pred CceEEEEEcCCCCCCCcEEeecCCCccccCCCCCCCeEecc-CCCEEEEEee
Q 002209 479 RRTRTWVISPGSKDVAPRILFDRSSEDVYSDPGSPMMRRTS-TGTYVIAKIK 529 (953)
Q Consensus 479 ~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~Sp-DG~~l~~~~~ 529 (953)
...+||...... ......+...+-+.+ +-||+ ++.+++-...
T Consensus 257 mT~riw~~~~~d---s~~e~~~~HtEFv~g------~Dws~~~~~~vAs~gW 299 (311)
T KOG0277|consen 257 MTVRIWDPERQD---SAIETVDHHTEFVCG------LDWSLFDPGQVASTGW 299 (311)
T ss_pred ceEEecccccch---hhhhhhhccceEEec------cccccccCceeeeccc
Confidence 223666544222 122223344444444 33544 5566766554
No 273
>KOG1553 consensus Predicted alpha/beta hydrolase BAT5 [General function prediction only]
Probab=98.18 E-value=3.4e-06 Score=85.65 Aligned_cols=182 Identities=14% Similarity=0.098 Sum_probs=107.1
Q ss_pred eEEEEEEcCCCcEEEEEEEcCC-CCCCCCCCCccEEEEeCCCCCcCcCCCCcccCCCCCCCCccchHHHHHHHcCcEEEE
Q 002209 639 KELIKYQRKDGVQLSATLYLPP-GYDPSKDGPLPCLFWSYPGEFKSKDAAGQVRGSPNEFPRIGSTSVLLWLARGFAILG 717 (953)
Q Consensus 639 ~~~~~~~~~dg~~~~~~l~~P~-~~~~~~~~~~P~vv~~hGg~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~G~~V~~ 717 (953)
-.+..+++.||.++...+.--. +..+.. .-+||++-|.. .|...+- +..=++.||.|+.
T Consensus 214 G~R~kiks~dgneiDtmF~d~r~n~~~ng---q~LvIC~EGNA---------------GFYEvG~--m~tP~~lgYsvLG 273 (517)
T KOG1553|consen 214 GQRLKIKSSDGNEIDTMFLDGRPNQSGNG---QDLVICFEGNA---------------GFYEVGV--MNTPAQLGYSVLG 273 (517)
T ss_pred CeEEEEeecCCcchhheeecCCCCCCCCC---ceEEEEecCCc---------------cceEeee--ecChHHhCceeec
Confidence 3577888889998887666321 212211 34677776631 1222221 1122678999999
Q ss_pred cCCCCCCCCCChhhhhhhHHHHHHHHHHHHHHHHHcCCCCCCcEEEEEeChHHHHHHHHHHhCCCcccEEEEcccCCCCC
Q 002209 718 GPTTPIIGEGDEEANDRFVEQLVACAEAAVEEVVRRGVAHPSKIAVGGHSYGAFMTANLLAHAPHLFCCGIARSGAYNRT 797 (953)
Q Consensus 718 ~~~~~~~G~G~~~~~~~~~~~~~~D~~~~~~~l~~~~~~d~~~i~l~G~S~GG~~a~~~a~~~p~~~~a~v~~~~~~d~~ 797 (953)
.+.. |++.+.+- .+..+....+.+++++.++.-....+.|.+.|+|-||+-++|+|..+|+ ++|+|+.+.+-|..
T Consensus 274 wNhP---GFagSTG~-P~p~n~~nA~DaVvQfAI~~Lgf~~edIilygWSIGGF~~~waAs~YPd-VkavvLDAtFDDll 348 (517)
T KOG1553|consen 274 WNHP---GFAGSTGL-PYPVNTLNAADAVVQFAIQVLGFRQEDIILYGWSIGGFPVAWAASNYPD-VKAVVLDATFDDLL 348 (517)
T ss_pred cCCC---CccccCCC-CCcccchHHHHHHHHHHHHHcCCCccceEEEEeecCCchHHHHhhcCCC-ceEEEeecchhhhh
Confidence 5554 44444221 1223334445577788777644557889999999999999999999987 99999987654422
Q ss_pred CCCc-Cccccc-chhhhhHHHHHhcCcccccCCCCCcEEEEEeCCCCCCC
Q 002209 798 LTPF-GFQNED-RTLWEATSTYVEMSPFMSANKLKKPILLVHGEEDNNSG 845 (953)
Q Consensus 798 ~~~~-~~~~~~-~~~~~~~~~~~~~sp~~~~~~i~~P~Li~~G~~D~~v~ 845 (953)
.... .++... +........+...+-.+.+.+.+.|+++|--++|+++.
T Consensus 349 pLAl~rMP~~~~giV~~aiRnh~NLnnaell~ry~GPi~lIRRt~dEIit 398 (517)
T KOG1553|consen 349 PLALFRMPTFFSGIVEHAIRNHMNLNNAELLARYKGPIRLIRRTQDEIIT 398 (517)
T ss_pred hHHhhhchHHHHHHHHHHHHHhcccchHHHHHhhcCchhHhhhhhHhhhh
Confidence 1110 011100 00011112222223334456678999999999998864
No 274
>KOG1445 consensus Tumor-specific antigen (contains WD repeats) [Cytoskeleton]
Probab=98.18 E-value=2.8e-05 Score=84.68 Aligned_cols=98 Identities=14% Similarity=0.195 Sum_probs=63.2
Q ss_pred CcceEEEeccCceEE-EeccCCCcccCCccccccccCccceeeccCCCCceEEEEeccCCCcccccccCCeEEEEecCCC
Q 002209 365 PRQVGVWTTDGIFVR-ELCDLPLAEDIPIAFNSVRKGMRSINWRSDKPSTLYWAETQDGGDAKVEVTPRDIIYTQQAEPV 443 (953)
Q Consensus 365 ~~~i~~~d~~g~~~~-~l~~~~~~~~~p~~~~~~~~~~~~~~wspDg~~i~~~~~~~~~~~~~~~~~~~~~l~~~d~~~~ 443 (953)
...|.+||+.+...+ .+..+. .++.+++|||||+.++-. ...+.|+++. |.
T Consensus 699 d~Ti~lWDl~~~~~~~~l~gHt-------------dqIf~~AWSpdGr~~AtV-------------cKDg~~rVy~--Pr 750 (1012)
T KOG1445|consen 699 DSTIELWDLANAKLYSRLVGHT-------------DQIFGIAWSPDGRRIATV-------------CKDGTLRVYE--PR 750 (1012)
T ss_pred cceeeeeehhhhhhhheeccCc-------------CceeEEEECCCCcceeee-------------ecCceEEEeC--CC
Confidence 348999999854332 344332 456789999999998877 4566888887 44
Q ss_pred CCCCceEEeecc--cccCCeeeccCCceEEEEEecccCceEEEEEcCCC
Q 002209 444 QGEGPEILHKLD--LRYGGISWCDDSLALVYESWYKTRRTRTWVISPGS 490 (953)
Q Consensus 444 ~g~~~~~l~~~~--~~~~~~~~SpDg~~l~~~~~~~~~~~~l~~~d~~~ 490 (953)
.+.++..-..+. .+-..+.|.=||+.|+....+...+.+|-.++.++
T Consensus 751 s~e~pv~Eg~gpvgtRgARi~wacdgr~viv~Gfdk~SeRQv~~Y~Aq~ 799 (1012)
T KOG1445|consen 751 SREQPVYEGKGPVGTRGARILWACDGRIVIVVGFDKSSERQVQMYDAQT 799 (1012)
T ss_pred CCCCccccCCCCccCcceeEEEEecCcEEEEecccccchhhhhhhhhhh
Confidence 443332222221 22234889999999998877665444566666554
No 275
>KOG0640 consensus mRNA cleavage stimulating factor complex; subunit 1 [RNA processing and modification]
Probab=98.16 E-value=5e-05 Score=76.02 Aligned_cols=119 Identities=12% Similarity=0.158 Sum_probs=73.4
Q ss_pred CCCcccccccCCCCcEEEEEEecCCccccccCCCCCcceEEEeccCceEEEeccCCCcccCCccccccccCccceeeccC
Q 002209 330 PPAVYTSLDPSPDEKYILISSIHRPYSFIVPCGRFPRQVGVWTTDGIFVRELCDLPLAEDIPIAFNSVRKGMRSINWRSD 409 (953)
Q Consensus 330 ~~~~~~~~~~SpDG~~l~~~~~~~~~~~~~~~~~~~~~i~~~d~~g~~~~~l~~~~~~~~~p~~~~~~~~~~~~~~wspD 409 (953)
+...+.++.|.|.|.+|++...+. .+.+||+++-+.-.-.+ |.. .+..++..+.+|+.
T Consensus 215 d~~~vrsiSfHPsGefllvgTdHp-------------~~rlYdv~T~Qcfvsan-Pd~--------qht~ai~~V~Ys~t 272 (430)
T KOG0640|consen 215 DTEPVRSISFHPSGEFLLVGTDHP-------------TLRLYDVNTYQCFVSAN-PDD--------QHTGAITQVRYSST 272 (430)
T ss_pred ccceeeeEeecCCCceEEEecCCC-------------ceeEEeccceeEeeecC-ccc--------ccccceeEEEecCC
Confidence 337788999999999999988554 78899998655433222 111 22245667889998
Q ss_pred CCCceEEEEeccCCCcccccccCCeEEEEecCCCCCCCceEEe-e-cccccCCeeeccCCceEEEEEecccCceEEEEEc
Q 002209 410 KPSTLYWAETQDGGDAKVEVTPRDIIYTQQAEPVQGEGPEILH-K-LDLRYGGISWCDDSLALVYESWYKTRRTRTWVIS 487 (953)
Q Consensus 410 g~~i~~~~~~~~~~~~~~~~~~~~~l~~~d~~~~~g~~~~~l~-~-~~~~~~~~~~SpDg~~l~~~~~~~~~~~~l~~~d 487 (953)
|+ +|.+. +..+.|-+||= ..+.-.+.+. . +...+-+..|+.+||+|+.+..+... .||-+.
T Consensus 273 ~~--lYvTa-----------SkDG~IklwDG--VS~rCv~t~~~AH~gsevcSa~Ftkn~kyiLsSG~DS~v--kLWEi~ 335 (430)
T KOG0640|consen 273 GS--LYVTA-----------SKDGAIKLWDG--VSNRCVRTIGNAHGGSEVCSAVFTKNGKYILSSGKDSTV--KLWEIS 335 (430)
T ss_pred cc--EEEEe-----------ccCCcEEeecc--ccHHHHHHHHhhcCCceeeeEEEccCCeEEeecCCccee--eeeeec
Confidence 87 34322 34557778871 1111112221 1 22345568899999999887654432 566554
No 276
>COG2021 MET2 Homoserine acetyltransferase [Amino acid transport and metabolism]
Probab=98.15 E-value=5e-05 Score=79.85 Aligned_cols=53 Identities=17% Similarity=0.059 Sum_probs=42.6
Q ss_pred HHHHHHHHHHHHHHHcCCCCCCcE-EEEEeChHHHHHHHHHHhCCCcccEEEEccc
Q 002209 738 QLVACAEAAVEEVVRRGVAHPSKI-AVGGHSYGAFMTANLLAHAPHLFCCGIARSG 792 (953)
Q Consensus 738 ~~~~D~~~~~~~l~~~~~~d~~~i-~l~G~S~GG~~a~~~a~~~p~~~~a~v~~~~ 792 (953)
.-+.|.+++-+.|.+.-.| +++ +|+|.||||+.++..+..+|++++.+|.++.
T Consensus 127 ~ti~D~V~aq~~ll~~LGI--~~l~avvGgSmGGMqaleWa~~yPd~V~~~i~ia~ 180 (368)
T COG2021 127 ITIRDMVRAQRLLLDALGI--KKLAAVVGGSMGGMQALEWAIRYPDRVRRAIPIAT 180 (368)
T ss_pred ccHHHHHHHHHHHHHhcCc--ceEeeeeccChHHHHHHHHHHhChHHHhhhheecc
Confidence 4477888887777665444 355 4999999999999999999999988887775
No 277
>KOG2919 consensus Guanine nucleotide-binding protein [General function prediction only]
Probab=98.15 E-value=0.00014 Score=73.54 Aligned_cols=115 Identities=18% Similarity=0.220 Sum_probs=61.8
Q ss_pred CcccccccCC-CCcEEEEEEecCCccccccCCCCCcceEEEeccCceEEEeccCCCcccCCccccccccCccceeeccCC
Q 002209 332 AVYTSLDPSP-DEKYILISSIHRPYSFIVPCGRFPRQVGVWTTDGIFVRELCDLPLAEDIPIAFNSVRKGMRSINWRSDK 410 (953)
Q Consensus 332 ~~~~~~~~Sp-DG~~l~~~~~~~~~~~~~~~~~~~~~i~~~d~~g~~~~~l~~~~~~~~~p~~~~~~~~~~~~~~wspDg 410 (953)
+-++.++||| |.+.+++.+.. +.+-++.-++..+-.+.. +..+|+..+.|-+||
T Consensus 208 giisc~a~sP~~~~~~a~gsY~-------------q~~giy~~~~~~pl~llg------------gh~gGvThL~~~edG 262 (406)
T KOG2919|consen 208 GIISCFAFSPMDSKTLAVGSYG-------------QRVGIYNDDGRRPLQLLG------------GHGGGVTHLQWCEDG 262 (406)
T ss_pred ceeeeeeccCCCCcceeeeccc-------------ceeeeEecCCCCceeeec------------ccCCCeeeEEeccCc
Confidence 4567788999 55677766622 244455444443333222 233677889999999
Q ss_pred CCceEEEEeccCCCcccccccCCeEEEEecCCCCCCCce-EEeecccccC---CeeeccCCceEEEEEecccCceEEEEE
Q 002209 411 PSTLYWAETQDGGDAKVEVTPRDIIYTQQAEPVQGEGPE-ILHKLDLRYG---GISWCDDSLALVYESWYKTRRTRTWVI 486 (953)
Q Consensus 411 ~~i~~~~~~~~~~~~~~~~~~~~~l~~~d~~~~~g~~~~-~l~~~~~~~~---~~~~SpDg~~l~~~~~~~~~~~~l~~~ 486 (953)
+++.... ...+.|..||+ ...+.+. .|..+-.+.+ .+...|+|+.|+....++. .++|..
T Consensus 263 n~lfsGa------------Rk~dkIl~WDi--R~~~~pv~~L~rhv~~TNQRI~FDld~~~~~LasG~tdG~--V~vwdl 326 (406)
T KOG2919|consen 263 NKLFSGA------------RKDDKILCWDI--RYSRDPVYALERHVGDTNQRILFDLDPKGEILASGDTDGS--VRVWDL 326 (406)
T ss_pred Ceecccc------------cCCCeEEEEee--hhccchhhhhhhhccCccceEEEecCCCCceeeccCCCcc--EEEEec
Confidence 9654331 12357788886 2222221 1222222111 1445688988887644432 255544
Q ss_pred c
Q 002209 487 S 487 (953)
Q Consensus 487 d 487 (953)
+
T Consensus 327 k 327 (406)
T KOG2919|consen 327 K 327 (406)
T ss_pred C
Confidence 3
No 278
>KOG2564 consensus Predicted acetyltransferases and hydrolases with the alpha/beta hydrolase fold [General function prediction only]
Probab=98.15 E-value=1.2e-05 Score=79.93 Aligned_cols=123 Identities=20% Similarity=0.232 Sum_probs=79.7
Q ss_pred eEEEEEEcCCCcEEEEEEEcCCCCCCCCCCCccEEEEeCCCCCcCcCCCCcccCCCCCCCCccchHHHHHHH-cCcEEEE
Q 002209 639 KELIKYQRKDGVQLSATLYLPPGYDPSKDGPLPCLFWSYPGEFKSKDAAGQVRGSPNEFPRIGSTSVLLWLA-RGFAILG 717 (953)
Q Consensus 639 ~~~~~~~~~dg~~~~~~l~~P~~~~~~~~~~~P~vv~~hGg~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~-~G~~V~~ 717 (953)
.+.+.+++.++ ++..++-+|.. ..-|++++.|||..... .|. .++..+.. .-+.+++
T Consensus 50 kedv~i~~~~~-t~n~Y~t~~~~------t~gpil~l~HG~G~S~L-----------SfA----~~a~el~s~~~~r~~a 107 (343)
T KOG2564|consen 50 KEDVSIDGSDL-TFNVYLTLPSA------TEGPILLLLHGGGSSAL-----------SFA----IFASELKSKIRCRCLA 107 (343)
T ss_pred ccccccCCCcc-eEEEEEecCCC------CCccEEEEeecCcccch-----------hHH----HHHHHHHhhcceeEEE
Confidence 45566665554 67777877752 23799999999732211 121 22333333 4577788
Q ss_pred cCCCCCCCCCChhhh---hhhHHHHHHHHHHHHHHHHHcCCCCCCcEEEEEeChHHHHHHHHHHhC--CCcccEEEEc
Q 002209 718 GPTTPIIGEGDEEAN---DRFVEQLVACAEAAVEEVVRRGVAHPSKIAVGGHSYGAFMTANLLAHA--PHLFCCGIAR 790 (953)
Q Consensus 718 ~~~~~~~G~G~~~~~---~~~~~~~~~D~~~~~~~l~~~~~~d~~~i~l~G~S~GG~~a~~~a~~~--p~~~~a~v~~ 790 (953)
+|.+|+|++... +-..+.+..|+.+.++++-.. ++.+|+|+||||||.++.+.+... |. +.+++.+
T Consensus 108 ---~DlRgHGeTk~~~e~dlS~eT~~KD~~~~i~~~fge---~~~~iilVGHSmGGaIav~~a~~k~lps-l~Gl~vi 178 (343)
T KOG2564|consen 108 ---LDLRGHGETKVENEDDLSLETMSKDFGAVIKELFGE---LPPQIILVGHSMGGAIAVHTAASKTLPS-LAGLVVI 178 (343)
T ss_pred ---eeccccCccccCChhhcCHHHHHHHHHHHHHHHhcc---CCCceEEEeccccchhhhhhhhhhhchh-hhceEEE
Confidence 666889887432 223567889999888887532 346899999999999999888753 33 4444443
No 279
>KOG0295 consensus WD40 repeat-containing protein [Function unknown]
Probab=98.14 E-value=3.4e-05 Score=79.10 Aligned_cols=227 Identities=16% Similarity=0.172 Sum_probs=134.8
Q ss_pred ceEEEEccCCCCCCceeeeecCCCCCcccceEeccCCCeEEEEEeeccccCCCCcceEEEEECCCC-ceeecccCCCccc
Q 002209 164 GIGIHQLFPDGKLGQEIEIQGFPDGAKLNFVTWSQDGKHLAFSIRIDAEDSSSSKLRVWVADVDTG-KARPLFQSPDIYL 242 (953)
Q Consensus 164 ~i~i~~~~~~g~~~~~~~l~~~~~~~~~~~~~wSPDG~~laf~~~~~~~~~~~~~~~l~~~d~~~g-~~~~lt~~~~~~~ 242 (953)
.|++||..+ |+. .+.|.+++++ +...+++.-|+.|+.++. ...+.++|.++- +..+.....+..
T Consensus 131 tikv~D~~t-g~~--e~~LrGHt~s--v~di~~~a~Gk~l~tcSs---------Dl~~~LWd~~~~~~c~ks~~gh~h~- 195 (406)
T KOG0295|consen 131 TIKVFDTET-GEL--ERSLRGHTDS--VFDISFDASGKYLATCSS---------DLSAKLWDFDTFFRCIKSLIGHEHG- 195 (406)
T ss_pred eEEEEEccc-hhh--hhhhhccccc--eeEEEEecCccEEEecCC---------ccchhheeHHHHHHHHHHhcCcccc-
Confidence 689999854 332 4556666544 888999999999998663 333556665441 222222222222
Q ss_pred cccccceEEecCCeEEEEEecCCCCCCCCCCCCCCCCceeecCCCccccchhhhhhcCCcchhhhhhhhccceEEEEEc-
Q 002209 243 NAIFDNFVWVNNSTLLVCTIPLLRGDPPKKPLVPLGPKMQSNEKRDIIQVRTFQDLLKDEYDEDLFDYYATTQLVLVSL- 321 (953)
Q Consensus 243 ~~~~~~~~wspDg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~l~~~~~- 321 (953)
+..+.+-|-|..|+.. .+| ..|...++
T Consensus 196 ---vS~V~f~P~gd~ilS~----------------------------------------srD---------~tik~We~~ 223 (406)
T KOG0295|consen 196 ---VSSVFFLPLGDHILSC----------------------------------------SRD---------NTIKAWECD 223 (406)
T ss_pred ---eeeEEEEecCCeeeec----------------------------------------ccc---------cceeEEecc
Confidence 7788888999888744 222 23445555
Q ss_pred CC-ceeEeCCC-CcccccccCCCCcEEEEEEecCCccccccCCCCCcceEEEeccCceEEEec-cCCCcccCCccccccc
Q 002209 322 DG-TVKEIGPP-AVYTSLDPSPDEKYILISSIHRPYSFIVPCGRFPRQVGVWTTDGIFVRELC-DLPLAEDIPIAFNSVR 398 (953)
Q Consensus 322 ~g-~~~~l~~~-~~~~~~~~SpDG~~l~~~~~~~~~~~~~~~~~~~~~i~~~d~~g~~~~~l~-~~~~~~~~p~~~~~~~ 398 (953)
+| ....+... ..+..++.+-||..+|..+++ ..+.+|-+.+++.+.+- .+. .|
T Consensus 224 tg~cv~t~~~h~ewvr~v~v~~DGti~As~s~d-------------qtl~vW~~~t~~~k~~lR~hE----h~------- 279 (406)
T KOG0295|consen 224 TGYCVKTFPGHSEWVRMVRVNQDGTIIASCSND-------------QTLRVWVVATKQCKAELREHE----HP------- 279 (406)
T ss_pred cceeEEeccCchHhEEEEEecCCeeEEEecCCC-------------ceEEEEEeccchhhhhhhccc----cc-------
Confidence 55 55556555 788889999999887766644 38999999876544322 221 11
Q ss_pred cCccceeeccCCCCceE--EEEeccCCCcccccccCCeEEEEecCCCCCCCceEEeecccccCCeeeccCCceEEEEEec
Q 002209 399 KGMRSINWRSDKPSTLY--WAETQDGGDAKVEVTPRDIIYTQQAEPVQGEGPEILHKLDLRYGGISWCDDSLALVYESWY 476 (953)
Q Consensus 399 ~~~~~~~wspDg~~i~~--~~~~~~~~~~~~~~~~~~~l~~~d~~~~~g~~~~~l~~~~~~~~~~~~SpDg~~l~~~~~~ 476 (953)
+.-++|.|+...--. .....+++......+.+..|.+||+ .+|.-.-.|..++..+.+++|+|-|++|+....+
T Consensus 280 --vEci~wap~~~~~~i~~at~~~~~~~~l~s~SrDktIk~wdv--~tg~cL~tL~ghdnwVr~~af~p~Gkyi~ScaDD 355 (406)
T KOG0295|consen 280 --VECIAWAPESSYPSISEATGSTNGGQVLGSGSRDKTIKIWDV--STGMCLFTLVGHDNWVRGVAFSPGGKYILSCADD 355 (406)
T ss_pred --eEEEEecccccCcchhhccCCCCCccEEEeecccceEEEEec--cCCeEEEEEecccceeeeeEEcCCCeEEEEEecC
Confidence 123556665431100 0001111112222234456788886 3333233456778888999999999999988766
Q ss_pred ccCceEEEEEc
Q 002209 477 KTRRTRTWVIS 487 (953)
Q Consensus 477 ~~~~~~l~~~d 487 (953)
++- ++|.+.
T Consensus 356 ktl--rvwdl~ 364 (406)
T KOG0295|consen 356 KTL--RVWDLK 364 (406)
T ss_pred CcE--EEEEec
Confidence 543 566554
No 280
>KOG0640 consensus mRNA cleavage stimulating factor complex; subunit 1 [RNA processing and modification]
Probab=98.13 E-value=6.6e-05 Score=75.17 Aligned_cols=196 Identities=16% Similarity=0.195 Sum_probs=116.7
Q ss_pred CCCCceecCCCCEEEEEecCCCCCccccc----c--c--------cc-------------eeceEEecCCCCCCcceeee
Q 002209 110 PLPALSFSPQRDKILFLKRRALPPLEELA----R--P--------EE-------------KLAGLRIDGKCNTRSRMSFY 162 (953)
Q Consensus 110 ~~~~~~~SPDG~~la~~~~~~~~~~~~~~----~--~--------~~-------------~~~~~~~~~~~~~~~~~~~~ 162 (953)
..+..+|||||..+|..+.+.-.-+.+.. + | .. .+.-+.|-|.+......+.+
T Consensus 114 ~cR~aafs~DG~lvATGsaD~SIKildvermlaks~~~em~~~~~qa~hPvIRTlYDH~devn~l~FHPre~ILiS~srD 193 (430)
T KOG0640|consen 114 PCRAAAFSPDGSLVATGSADASIKILDVERMLAKSKPKEMISGDTQARHPVIRTLYDHVDEVNDLDFHPRETILISGSRD 193 (430)
T ss_pred ceeeeeeCCCCcEEEccCCcceEEEeehhhhhhhcchhhhccCCcccCCceEeehhhccCcccceeecchhheEEeccCC
Confidence 45678899999999987766222222111 0 1 00 11224444554444444444
Q ss_pred eceEEEEccCCCCCCceeeeecCCCCCcccceEeccCCCeEEEEEeeccccCCCCcceEEEEECCCCceeecccCCCccc
Q 002209 163 TGIGIHQLFPDGKLGQEIEIQGFPDGAKLNFVTWSQDGKHLAFSIRIDAEDSSSSKLRVWVADVDTGKARPLFQSPDIYL 242 (953)
Q Consensus 163 ~~i~i~~~~~~g~~~~~~~l~~~~~~~~~~~~~wSPDG~~laf~~~~~~~~~~~~~~~l~~~d~~~g~~~~lt~~~~~~~ 242 (953)
+.|.++|..- . ...+....+.+-..+...+|.|.|..|+.. .....+.++|+++-++- +...|....
T Consensus 194 ~tvKlFDfsK-~--saKrA~K~~qd~~~vrsiSfHPsGefllvg---------TdHp~~rlYdv~T~Qcf-vsanPd~qh 260 (430)
T KOG0640|consen 194 NTVKLFDFSK-T--SAKRAFKVFQDTEPVRSISFHPSGEFLLVG---------TDHPTLRLYDVNTYQCF-VSANPDDQH 260 (430)
T ss_pred CeEEEEeccc-H--HHHHHHHHhhccceeeeEeecCCCceEEEe---------cCCCceeEEeccceeEe-eecCccccc
Confidence 5677888732 1 112222234454578899999999999984 34778888888876553 223355445
Q ss_pred cccccceEEecCCeEEEEEecCCCCCCCCCCCCCCCCceeecCCCccccchhhhhhcCCcchhhhhhhhccceEEEEEc-
Q 002209 243 NAIFDNFVWVNNSTLLVCTIPLLRGDPPKKPLVPLGPKMQSNEKRDIIQVRTFQDLLKDEYDEDLFDYYATTQLVLVSL- 321 (953)
Q Consensus 243 ~~~~~~~~wspDg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~l~~~~~- 321 (953)
.+.+..+.+|+.|+.-+..+ ..+.|-++|-
T Consensus 261 t~ai~~V~Ys~t~~lYvTaS-------------------------------------------------kDG~IklwDGV 291 (430)
T KOG0640|consen 261 TGAITQVRYSSTGSLYVTAS-------------------------------------------------KDGAIKLWDGV 291 (430)
T ss_pred ccceeEEEecCCccEEEEec-------------------------------------------------cCCcEEeeccc
Confidence 55577888999887555331 1123334443
Q ss_pred CC-ceeEeCCC---CcccccccCCCCcEEEEEEecCCccccccCCCCCcceEEEeccCceEEE
Q 002209 322 DG-TVKEIGPP---AVYTSLDPSPDEKYILISSIHRPYSFIVPCGRFPRQVGVWTTDGIFVRE 380 (953)
Q Consensus 322 ~g-~~~~l~~~---~~~~~~~~SpDG~~l~~~~~~~~~~~~~~~~~~~~~i~~~d~~g~~~~~ 380 (953)
++ -++.+.+. ..+.+..|+.|||+|+.+..+. .+.+|.+.++..-.
T Consensus 292 S~rCv~t~~~AH~gsevcSa~Ftkn~kyiLsSG~DS-------------~vkLWEi~t~R~l~ 341 (430)
T KOG0640|consen 292 SNRCVRTIGNAHGGSEVCSAVFTKNGKYILSSGKDS-------------TVKLWEISTGRMLK 341 (430)
T ss_pred cHHHHHHHHhhcCCceeeeEEEccCCeEEeecCCcc-------------eeeeeeecCCceEE
Confidence 32 22223221 5677889999999998776443 78999998655433
No 281
>KOG2551 consensus Phospholipase/carboxyhydrolase [Amino acid transport and metabolism]
Probab=98.13 E-value=2.1e-05 Score=76.18 Aligned_cols=122 Identities=19% Similarity=0.160 Sum_probs=88.3
Q ss_pred HHHHHHHHHHcCCCCCCcEEEEEeChHHHHHHHHHHh---------CCCcccEEEEcccCCCCCCCCcCcccccchhhhh
Q 002209 743 AEAAVEEVVRRGVAHPSKIAVGGHSYGAFMTANLLAH---------APHLFCCGIARSGAYNRTLTPFGFQNEDRTLWEA 813 (953)
Q Consensus 743 ~~~~~~~l~~~~~~d~~~i~l~G~S~GG~~a~~~a~~---------~p~~~~a~v~~~~~~d~~~~~~~~~~~~~~~~~~ 813 (953)
+....+|+.+++.-| +|+|.|.|+.|+..+++. .| -|+-+|.++|+.-...
T Consensus 92 l~yl~~~i~enGPFD----GllGFSQGA~laa~l~~~~~~~~~~~~~P-~~kF~v~~SGf~~~~~--------------- 151 (230)
T KOG2551|consen 92 LEYLEDYIKENGPFD----GLLGFSQGAALAALLAGLGQKGLPYVKQP-PFKFAVFISGFKFPSK--------------- 151 (230)
T ss_pred HHHHHHHHHHhCCCc----cccccchhHHHHHHhhcccccCCcccCCC-CeEEEEEEecCCCCcc---------------
Confidence 444556777887767 899999999999999882 12 3688888888643210
Q ss_pred HHHHHhcCcccccCCCCCcEEEEEeCCCCCCCCchHHHHHHHHHHHhCCCcEEEEEeCCCCccCCCcccHHHHHHHHHHH
Q 002209 814 TSTYVEMSPFMSANKLKKPILLVHGEEDNNSGTLTMQSDRFFNALKGHGALCRLVILPFESHGYAARESIMHVLWETDRW 893 (953)
Q Consensus 814 ~~~~~~~sp~~~~~~i~~P~Li~~G~~D~~v~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~H~~~~~~~~~~~~~~i~~f 893 (953)
.+. -..+...+++|.|-+.|+.|.+|| ...+..+++..+.. .++.-|| ||.+.. .....+.+.+|
T Consensus 152 --~~~---~~~~~~~i~~PSLHi~G~~D~iv~--~~~s~~L~~~~~~a----~vl~Hpg-gH~VP~---~~~~~~~i~~f 216 (230)
T KOG2551|consen 152 --KLD---ESAYKRPLSTPSLHIFGETDTIVP--SERSEQLAESFKDA----TVLEHPG-GHIVPN---KAKYKEKIADF 216 (230)
T ss_pred --hhh---hhhhccCCCCCeeEEecccceeec--chHHHHHHHhcCCC----eEEecCC-CccCCC---chHHHHHHHHH
Confidence 000 011234578999999999999998 89999999999876 5556665 998743 34667889999
Q ss_pred HHHhcc
Q 002209 894 LQKYCV 899 (953)
Q Consensus 894 l~~~l~ 899 (953)
|...+.
T Consensus 217 i~~~~~ 222 (230)
T KOG2551|consen 217 IQSFLQ 222 (230)
T ss_pred HHHHHH
Confidence 988764
No 282
>KOG2919 consensus Guanine nucleotide-binding protein [General function prediction only]
Probab=98.12 E-value=8.5e-05 Score=74.98 Aligned_cols=128 Identities=18% Similarity=0.217 Sum_probs=71.3
Q ss_pred ceEEEEEc-CCceeEeCCC-------CcccccccCCCCcEEEEEEecCCccccccCCCCCcceEEEecc--CceEEEecc
Q 002209 314 TQLVLVSL-DGTVKEIGPP-------AVYTSLDPSPDEKYILISSIHRPYSFIVPCGRFPRQVGVWTTD--GIFVRELCD 383 (953)
Q Consensus 314 ~~l~~~~~-~g~~~~l~~~-------~~~~~~~~SpDG~~l~~~~~~~~~~~~~~~~~~~~~i~~~d~~--g~~~~~l~~ 383 (953)
.-|.++|. +|+.+.-... ....+++|||||.+|+..- ...|.++|+. |......+.
T Consensus 133 ~PIh~wdaftG~lraSy~~ydh~de~taAhsL~Fs~DGeqlfaGy--------------krcirvFdt~RpGr~c~vy~t 198 (406)
T KOG2919|consen 133 QPIHLWDAFTGKLRASYRAYDHQDEYTAAHSLQFSPDGEQLFAGY--------------KRCIRVFDTSRPGRDCPVYTT 198 (406)
T ss_pred CceeeeeccccccccchhhhhhHHhhhhheeEEecCCCCeEeecc--------------cceEEEeeccCCCCCCcchhh
Confidence 34777788 8876644322 2234789999999987543 2378888884 322222221
Q ss_pred CCCcccCCccccccccCccceeeccCCCCceEEEEeccCCCcccccccCCeEEEEecCCCCCCCc-eEEeecccccCCee
Q 002209 384 LPLAEDIPIAFNSVRKGMRSINWRSDKPSTLYWAETQDGGDAKVEVTPRDIIYTQQAEPVQGEGP-EILHKLDLRYGGIS 462 (953)
Q Consensus 384 ~~~~~~~p~~~~~~~~~~~~~~wspDg~~i~~~~~~~~~~~~~~~~~~~~~l~~~d~~~~~g~~~-~~l~~~~~~~~~~~ 462 (953)
...... +..+-..-++|||-....+-+-.. ..+-.||..+ +..+ ..+..+.+.+..+.
T Consensus 199 ~~~~k~------gq~giisc~a~sP~~~~~~a~gsY----------~q~~giy~~~-----~~~pl~llggh~gGvThL~ 257 (406)
T KOG2919|consen 199 VTKGKF------GQKGIISCFAFSPMDSKTLAVGSY----------GQRVGIYNDD-----GRRPLQLLGGHGGGVTHLQ 257 (406)
T ss_pred hhcccc------cccceeeeeeccCCCCcceeeecc----------cceeeeEecC-----CCCceeeecccCCCeeeEE
Confidence 111000 011112347888876644443000 1122344443 3444 44566677888999
Q ss_pred eccCCceEEEEEec
Q 002209 463 WCDDSLALVYESWY 476 (953)
Q Consensus 463 ~SpDg~~l~~~~~~ 476 (953)
|.+||..|+..+..
T Consensus 258 ~~edGn~lfsGaRk 271 (406)
T KOG2919|consen 258 WCEDGNKLFSGARK 271 (406)
T ss_pred eccCcCeecccccC
Confidence 99999998776543
No 283
>PF10340 DUF2424: Protein of unknown function (DUF2424); InterPro: IPR019436 Sterol homeostasis in eukaryotic cells relies on the reciprocal interconversion of free sterols and steryl esters. In Saccharomyces cerevisiae (Baker's yeast) sterol acetylation requires the acetyltransferase Atf2, whereas deacetylation requires Say1, a membrane-anchored deacetylase with a putative active site in the ER lumen. Lack of Say1 results in the secretion of acetylated sterols into the culture medium, indicating that the substrate specificity of Say1 determines whether acetylated sterols are secreted from the cells or whether they are deacetylated and retained. In S. cerevisiae cells lacking Say1 or Atf2 are sensitive against the plant-derived allylbenzene eugenol and both Say1 and Atf2 affect pregnenolone toxicity, indicating that lipid acetylation acts as a detoxification pathway []. Homologues of Say1 are present in the mammalian genome and can functionally substitute for Say1 in yeast demonstrating that part of this pathway has been evolutionarily conserved [].
Probab=98.10 E-value=0.00011 Score=78.69 Aligned_cols=202 Identities=17% Similarity=0.117 Sum_probs=111.6
Q ss_pred EEEEEc-CCCCCCCCCCCccEEEEeCCCCCcCcCCCCcccCCCCCCCCccchHHHHHHHcCcEEEEcCCCCCCCCCChhh
Q 002209 653 SATLYL-PPGYDPSKDGPLPCLFWSYPGEFKSKDAAGQVRGSPNEFPRIGSTSVLLWLARGFAILGGPTTPIIGEGDEEA 731 (953)
Q Consensus 653 ~~~l~~-P~~~~~~~~~~~P~vv~~hGg~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~G~~V~~~~~~~~~G~G~~~~ 731 (953)
..|++. |..+.++. -|+|||+|||.+.......|+.. -..... +.. ..+++..||- ....+ .
T Consensus 107 s~Wlvk~P~~~~pk~---DpVlIYlHGGGY~l~~~p~qi~~--------L~~i~~-~l~-~~SILvLDYs-Lt~~~---~ 169 (374)
T PF10340_consen 107 SYWLVKAPNRFKPKS---DPVLIYLHGGGYFLGTTPSQIEF--------LLNIYK-LLP-EVSILVLDYS-LTSSD---E 169 (374)
T ss_pred eEEEEeCCcccCCCC---CcEEEEEcCCeeEecCCHHHHHH--------HHHHHH-HcC-CCeEEEEecc-ccccc---c
Confidence 457777 76655544 49999999985443222111110 001111 122 4566665552 11100 0
Q ss_pred hhhhHHHHHHHHHHHHHHHHHcCCCCCCcEEEEEeChHHHHHHHHHHhCC-----CcccEEEEcccCCCCCCCCc---C-
Q 002209 732 NDRFVEQLVACAEAAVEEVVRRGVAHPSKIAVGGHSYGAFMTANLLAHAP-----HLFCCGIARSGAYNRTLTPF---G- 802 (953)
Q Consensus 732 ~~~~~~~~~~D~~~~~~~l~~~~~~d~~~i~l~G~S~GG~~a~~~a~~~p-----~~~~a~v~~~~~~d~~~~~~---~- 802 (953)
...-++.-+.++.+..++|.+.. ..++|.++|-|+||.+++.++.... ..-+.+|+++|.++...... .
T Consensus 170 ~~~~yPtQL~qlv~~Y~~Lv~~~--G~~nI~LmGDSAGGnL~Ls~LqyL~~~~~~~~Pk~~iLISPWv~l~~~~~~~~~~ 247 (374)
T PF10340_consen 170 HGHKYPTQLRQLVATYDYLVESE--GNKNIILMGDSAGGNLALSFLQYLKKPNKLPYPKSAILISPWVNLVPQDSQEGSS 247 (374)
T ss_pred CCCcCchHHHHHHHHHHHHHhcc--CCCeEEEEecCccHHHHHHHHHHHhhcCCCCCCceeEEECCCcCCcCCCCCCCcc
Confidence 11223566678889999998432 2468999999999999988775321 12578999999877552110 0
Q ss_pred cc-cccc------hhhhhHHHHHh---------cCcccccCC---------C--CCcEEEEEeCCCCCCCCchHHHHHHH
Q 002209 803 FQ-NEDR------TLWEATSTYVE---------MSPFMSANK---------L--KKPILLVHGEEDNNSGTLTMQSDRFF 855 (953)
Q Consensus 803 ~~-~~~~------~~~~~~~~~~~---------~sp~~~~~~---------i--~~P~Li~~G~~D~~v~~~~~~~~~~~ 855 (953)
+. .... ......+.|.. ..|...... | +.-++|+.|+++- +-++.+++.
T Consensus 248 ~~~n~~~D~l~~~~~~~~~~~y~~~~~~~~~~~~~~~~n~~~n~d~~~W~~I~~~~~vfVi~Ge~Ev----frddI~~~~ 323 (374)
T PF10340_consen 248 YHDNEKRDMLSYKGLSMFGDAYIGNNDPENDLNSLPFVNIEYNFDAEDWKDILKKYSVFVIYGEDEV----FRDDILEWA 323 (374)
T ss_pred ccccccccccchhhHHHHHHhhccccccccccccCCccCcccCCChhHHHHhccCCcEEEEECCccc----cHHHHHHHH
Confidence 00 0000 00000011111 111111110 1 2469999999773 378899999
Q ss_pred HHHHhCCC-----cEEEEEeCCCCccC
Q 002209 856 NALKGHGA-----LCRLVILPFESHGY 877 (953)
Q Consensus 856 ~~l~~~g~-----~~~~~~~~~~~H~~ 877 (953)
+.+...+. ..++.+-+++.|.-
T Consensus 324 ~~~~~~~~~~~~~~~nv~~~~~G~Hi~ 350 (374)
T PF10340_consen 324 KKLNDVKPNKFSNSNNVYIDEGGIHIG 350 (374)
T ss_pred HHHhhcCccccCCcceEEEecCCcccc
Confidence 99985542 36777788888864
No 284
>PF06433 Me-amine-dh_H: Methylamine dehydrogenase heavy chain (MADH); InterPro: IPR009451 Methylamine dehydrogenase (1.4.99.3 from EC) is a periplasmic quinoprotein found in several methyltrophic bacteria []. It is induced when grown on methylamine as a carbon source MADH and catalyses the oxidative deamination of amines to their corresponding aldehydes. The redox cofactor of this enzyme is tryptophan tryptophylquinone (TTQ). Electrons derived from the oxidation of methylamine are passed to an electron acceptor, which is usually the blue-copper protein amicyanin (IPR002386 from INTERPRO). RCH2NH2 + H2O + acceptor = RCHO + NH3 + reduced acceptor MADH is a hetero-tetramer, comprised of two heavy subunits and two light subunits. The heavy subunit forms a seven-bladed beta-propeller like structure [].; GO: 0030058 amine dehydrogenase activity, 0030416 methylamine metabolic process, 0055114 oxidation-reduction process, 0042597 periplasmic space; PDB: 3RN1_F 3SVW_F 3PXT_F 3L4O_F 3L4M_D 3SJL_F 3PXS_D 3ORV_F 3RMZ_F 3RLM_F ....
Probab=98.09 E-value=0.0022 Score=67.45 Aligned_cols=221 Identities=11% Similarity=0.047 Sum_probs=103.7
Q ss_pred ccccccCCCCcEEEEEEecCCccccccCCCCCcceEEEeccCceEEEeccCCCcc-cCCccccccccCccceeeccCCCC
Q 002209 334 YTSLDPSPDEKYILISSIHRPYSFIVPCGRFPRQVGVWTTDGIFVRELCDLPLAE-DIPIAFNSVRKGMRSINWRSDKPS 412 (953)
Q Consensus 334 ~~~~~~SpDG~~l~~~~~~~~~~~~~~~~~~~~~i~~~d~~g~~~~~l~~~~~~~-~~p~~~~~~~~~~~~~~wspDg~~ 412 (953)
....++|.|||++++..... ...|-++|++.++.......|+.. ..| +.+++
T Consensus 97 ~~~~~ls~dgk~~~V~N~TP-----------a~SVtVVDl~~~kvv~ei~~PGC~~iyP--------------~~~~~-- 149 (342)
T PF06433_consen 97 KNMFALSADGKFLYVQNFTP-----------ATSVTVVDLAAKKVVGEIDTPGCWLIYP--------------SGNRG-- 149 (342)
T ss_dssp GGGEEE-TTSSEEEEEEESS-----------SEEEEEEETTTTEEEEEEEGTSEEEEEE--------------EETTE--
T ss_pred ccceEEccCCcEEEEEccCC-----------CCeEEEEECCCCceeeeecCCCEEEEEe--------------cCCCc--
Confidence 34578999999998876432 226889999976654444434321 111 11111
Q ss_pred ceEEEEeccCCCcccccccCCeEEEEecCCCCCCCceEEeecc-----cccCCeeeccCCceEEEEEecccCceEEEEEc
Q 002209 413 TLYWAETQDGGDAKVEVTPRDIIYTQQAEPVQGEGPEILHKLD-----LRYGGISWCDDSLALVYESWYKTRRTRTWVIS 487 (953)
Q Consensus 413 i~~~~~~~~~~~~~~~~~~~~~l~~~d~~~~~g~~~~~l~~~~-----~~~~~~~~SpDg~~l~~~~~~~~~~~~l~~~d 487 (953)
|. ...+.+.+..+.+ ..+|...+..+... .-...++++.++.+++|.+..+ .+|.++
T Consensus 150 --F~-----------~lC~DGsl~~v~L-d~~Gk~~~~~t~~F~~~~dp~f~~~~~~~~~~~~~F~Sy~G----~v~~~d 211 (342)
T PF06433_consen 150 --FS-----------MLCGDGSLLTVTL-DADGKEAQKSTKVFDPDDDPLFEHPAYSRDGGRLYFVSYEG----NVYSAD 211 (342)
T ss_dssp --EE-----------EEETTSCEEEEEE-TSTSSEEEEEEEESSTTTS-B-S--EEETTTTEEEEEBTTS----EEEEEE
T ss_pred --eE-----------EEecCCceEEEEE-CCCCCEeEeeccccCCCCcccccccceECCCCeEEEEecCC----EEEEEe
Confidence 11 1122333434433 12333322222211 1123456777777788876543 799999
Q ss_pred CCCCCCCcEEeecCCC-ccccCCCCCCCeEeccCCCE-EEEEeeeccCCCcEEEEecC-CCCCCCCCCeEEEEECCCCce
Q 002209 488 PGSKDVAPRILFDRSS-EDVYSDPGSPMMRRTSTGTY-VIAKIKKENDEGTYILLNGN-GATPEGNIPFLDLFDINTGSK 564 (953)
Q Consensus 488 ~~~~~~~~~~~~~~~~-~~~~~~~~~p~~~~SpDG~~-l~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~L~~~d~~~~~~ 564 (953)
+.+. .+.....-+. .+.. .. -.|-|-|-. +++.. ....-|+++... ..+-+..-..+|++|+++++.
T Consensus 212 lsg~--~~~~~~~~~~~t~~e---~~--~~WrPGG~Q~~A~~~---~~~rlyvLMh~g~~gsHKdpgteVWv~D~~t~kr 281 (342)
T PF06433_consen 212 LSGD--SAKFGKPWSLLTDAE---KA--DGWRPGGWQLIAYHA---ASGRLYVLMHQGGEGSHKDPGTEVWVYDLKTHKR 281 (342)
T ss_dssp ETTS--SEEEEEEEESS-HHH---HH--TTEEE-SSS-EEEET---TTTEEEEEEEE--TT-TTS-EEEEEEEETTTTEE
T ss_pred ccCC--cccccCcccccCccc---cc--cCcCCcceeeeeecc---ccCeEEEEecCCCCCCccCCceEEEEEECCCCeE
Confidence 8875 2222211100 0000 00 115555533 22321 011222222111 111112245799999999987
Q ss_pred EEEeccCcccceeeeEeeccCCccccccccCCEEEEEEecCCCCceEEEEECCCCCeeE
Q 002209 565 ERIWESDKEKYYETTVALMSDQTEGDLYLNQLKILTSKESKTENTQYYIQSWPDKKSCQ 623 (953)
Q Consensus 565 ~~l~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~p~~l~~~~~~~g~~~~ 623 (953)
..-+..+.. .. +.+.|-|.+-++|..+... ..|+++|..+|+...
T Consensus 282 v~Ri~l~~~-----~~-------Si~Vsqd~~P~L~~~~~~~--~~l~v~D~~tGk~~~ 326 (342)
T PF06433_consen 282 VARIPLEHP-----ID-------SIAVSQDDKPLLYALSAGD--GTLDVYDAATGKLVR 326 (342)
T ss_dssp EEEEEEEEE-----ES-------EEEEESSSS-EEEEEETTT--TEEEEEETTT--EEE
T ss_pred EEEEeCCCc-----cc-------eEEEccCCCcEEEEEcCCC--CeEEEEeCcCCcEEe
Confidence 766654422 11 1244666776777665432 579999999987543
No 285
>TIGR03230 lipo_lipase lipoprotein lipase. Members of this protein family are lipoprotein lipase (EC 3.1.1.34), a eukaryotic triacylglycerol lipase active in plasma and similar to pancreatic and hepatic triacylglycerol lipases (EC 3.1.1.3). It is also called clearing factor. It cleaves chylomicron and VLDL triacylglycerols; it also has phospholipase A-1 activity.
Probab=98.08 E-value=2.6e-05 Score=86.30 Aligned_cols=79 Identities=9% Similarity=-0.070 Sum_probs=59.0
Q ss_pred CcEEEEcCCCCCCCCCChhhh--hhhHHHHHHHHHHHHHHHHHcCCCCCCcEEEEEeChHHHHHHHHHHhCCCcccEEEE
Q 002209 712 GFAILGGPTTPIIGEGDEEAN--DRFVEQLVACAEAAVEEVVRRGVAHPSKIAVGGHSYGAFMTANLLAHAPHLFCCGIA 789 (953)
Q Consensus 712 G~~V~~~~~~~~~G~G~~~~~--~~~~~~~~~D~~~~~~~l~~~~~~d~~~i~l~G~S~GG~~a~~~a~~~p~~~~a~v~ 789 (953)
.|.|+++|. .|+|.+... ..+......++.+.+++|.+...++.+++.|+||||||.+|..++.+.|.++..++.
T Consensus 73 d~nVI~VDw---~g~g~s~y~~a~~~t~~vg~~la~lI~~L~~~~gl~l~~VhLIGHSLGAhIAg~ag~~~p~rV~rItg 149 (442)
T TIGR03230 73 SANVIVVDW---LSRAQQHYPTSAAYTKLVGKDVAKFVNWMQEEFNYPWDNVHLLGYSLGAHVAGIAGSLTKHKVNRITG 149 (442)
T ss_pred CCEEEEEEC---CCcCCCCCccccccHHHHHHHHHHHHHHHHHhhCCCCCcEEEEEECHHHHHHHHHHHhCCcceeEEEE
Confidence 599999554 555554322 122344456777788888765445678999999999999999999999999999998
Q ss_pred cccC
Q 002209 790 RSGA 793 (953)
Q Consensus 790 ~~~~ 793 (953)
..|+
T Consensus 150 LDPA 153 (442)
T TIGR03230 150 LDPA 153 (442)
T ss_pred EcCC
Confidence 8875
No 286
>COG0596 MhpC Predicted hydrolases or acyltransferases (alpha/beta hydrolase superfamily) [General function prediction only]
Probab=98.05 E-value=6.9e-05 Score=78.88 Aligned_cols=71 Identities=17% Similarity=0.237 Sum_probs=47.4
Q ss_pred cEEEEcCCCCCCCCCChhhhh-hhHHHHHHHHHHHHHHHHHcCCCCCCcEEEEEeChHHHHHHHHHHhCCCcccEEEEcc
Q 002209 713 FAILGGPTTPIIGEGDEEAND-RFVEQLVACAEAAVEEVVRRGVAHPSKIAVGGHSYGAFMTANLLAHAPHLFCCGIARS 791 (953)
Q Consensus 713 ~~V~~~~~~~~~G~G~~~~~~-~~~~~~~~D~~~~~~~l~~~~~~d~~~i~l~G~S~GG~~a~~~a~~~p~~~~a~v~~~ 791 (953)
|.|+. .+.+|+|.+. .. ........++...++ ..+ ..++.++|||+||.+++.++.++|+.++++|..+
T Consensus 51 ~~~~~---~d~~g~g~s~-~~~~~~~~~~~~~~~~~~---~~~---~~~~~l~G~S~Gg~~~~~~~~~~p~~~~~~v~~~ 120 (282)
T COG0596 51 YRVIA---PDLRGHGRSD-PAGYSLSAYADDLAALLD---ALG---LEKVVLVGHSMGGAVALALALRHPDRVRGLVLIG 120 (282)
T ss_pred eEEEE---ecccCCCCCC-cccccHHHHHHHHHHHHH---HhC---CCceEEEEecccHHHHHHHHHhcchhhheeeEec
Confidence 89998 4556777764 00 011111333333333 222 2349999999999999999999999999999888
Q ss_pred cC
Q 002209 792 GA 793 (953)
Q Consensus 792 ~~ 793 (953)
+.
T Consensus 121 ~~ 122 (282)
T COG0596 121 PA 122 (282)
T ss_pred CC
Confidence 54
No 287
>PF07433 DUF1513: Protein of unknown function (DUF1513); InterPro: IPR008311 There are currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=98.04 E-value=0.0027 Score=66.10 Aligned_cols=231 Identities=16% Similarity=0.087 Sum_probs=116.9
Q ss_pred eEEEEccCCCCCCceeeeecCCCCC-cccceEeccCCCeEEEEEeeccccCCCCcceEEEEECCCCceeecccCCCcccc
Q 002209 165 IGIHQLFPDGKLGQEIEIQGFPDGA-KLNFVTWSQDGKHLAFSIRIDAEDSSSSKLRVWVADVDTGKARPLFQSPDIYLN 243 (953)
Q Consensus 165 i~i~~~~~~g~~~~~~~l~~~~~~~-~~~~~~wSPDG~~laf~~~~~~~~~~~~~~~l~~~d~~~g~~~~lt~~~~~~~~ 243 (953)
++++|..+ | .....+. -+.+. ...+-.|||||++|+.+.+. -..+...|-++|+.. ..+++-..+..++.
T Consensus 30 ~~v~D~~~-g--~~~~~~~-a~~gRHFyGHg~fs~dG~~LytTEnd----~~~g~G~IgVyd~~~-~~~ri~E~~s~GIG 100 (305)
T PF07433_consen 30 ALVFDCRT-G--QLLQRLW-APPGRHFYGHGVFSPDGRLLYTTEND----YETGRGVIGVYDAAR-GYRRIGEFPSHGIG 100 (305)
T ss_pred EEEEEcCC-C--ceeeEEc-CCCCCEEecCEEEcCCCCEEEEeccc----cCCCcEEEEEEECcC-CcEEEeEecCCCcC
Confidence 46777643 2 1222333 23333 56678999999988776542 255678888999883 34444333332210
Q ss_pred ccccceEEecCCeEEEEEecCCCCCCCCCCCCCCCCceeecCCCccccchhhhhhcCCcchhhhhhhhccceEEEEEc-C
Q 002209 244 AIFDNFVWVNNSTLLVCTIPLLRGDPPKKPLVPLGPKMQSNEKRDIIQVRTFQDLLKDEYDEDLFDYYATTQLVLVSL-D 322 (953)
Q Consensus 244 ~~~~~~~wspDg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~l~~~~~-~ 322 (953)
...+.|.|||+.|++. +++.. .....++. ++..-.....|..+|. +
T Consensus 101 --PHel~l~pDG~tLvVA---NGGI~-----------Thpd~GR~-----------------kLNl~tM~psL~~ld~~s 147 (305)
T PF07433_consen 101 --PHELLLMPDGETLVVA---NGGIE-----------THPDSGRA-----------------KLNLDTMQPSLVYLDARS 147 (305)
T ss_pred --hhhEEEcCCCCEEEEE---cCCCc-----------cCcccCce-----------------ecChhhcCCceEEEecCC
Confidence 2378899999888876 11110 00000000 0000014467888887 8
Q ss_pred Cce-eE--eCCC---CcccccccCCCCcEEEEEEecCCccccccCCCCCcceEEEeccCceEEEeccCCCcccCCccccc
Q 002209 323 GTV-KE--IGPP---AVYTSLDPSPDEKYILISSIHRPYSFIVPCGRFPRQVGVWTTDGIFVRELCDLPLAEDIPIAFNS 396 (953)
Q Consensus 323 g~~-~~--l~~~---~~~~~~~~SpDG~~l~~~~~~~~~~~~~~~~~~~~~i~~~d~~g~~~~~l~~~~~~~~~p~~~~~ 396 (953)
|++ .+ +... -.+..+++++||.-++-.....+... ..-=+.+++..+ ..+.+.. +.. ....
T Consensus 148 G~ll~q~~Lp~~~~~lSiRHLa~~~~G~V~~a~Q~qg~~~~------~~PLva~~~~g~-~~~~~~~-p~~-----~~~~ 214 (305)
T PF07433_consen 148 GALLEQVELPPDLHQLSIRHLAVDGDGTVAFAMQYQGDPGD------APPLVALHRRGG-ALRLLPA-PEE-----QWRR 214 (305)
T ss_pred CceeeeeecCccccccceeeEEecCCCcEEEEEecCCCCCc------cCCeEEEEcCCC-cceeccC-ChH-----HHHh
Confidence 863 22 3322 46788999999974443332221111 111222332221 1222211 100 0112
Q ss_pred cccCccceeeccCCCCceEEEEeccCCCcccccccC-CeEEEEecCCCCCCCceEEeecccccCCeeeccCC
Q 002209 397 VRKGMRSINWRSDKPSTLYWAETQDGGDAKVEVTPR-DIIYTQQAEPVQGEGPEILHKLDLRYGGISWCDDS 467 (953)
Q Consensus 397 ~~~~~~~~~wspDg~~i~~~~~~~~~~~~~~~~~~~-~~l~~~d~~~~~g~~~~~l~~~~~~~~~~~~SpDg 467 (953)
....+.++++++||..++.. +.+ +.+.+||. ..++..... .-.+...++-.+++
T Consensus 215 l~~Y~gSIa~~~~g~~ia~t-------------sPrGg~~~~~d~---~tg~~~~~~-~l~D~cGva~~~~~ 269 (305)
T PF07433_consen 215 LNGYIGSIAADRDGRLIAVT-------------SPRGGRVAVWDA---ATGRLLGSV-PLPDACGVAPTDDG 269 (305)
T ss_pred hCCceEEEEEeCCCCEEEEE-------------CCCCCEEEEEEC---CCCCEeecc-ccCceeeeeecCCc
Confidence 33445689999999987776 333 46678875 434332221 12234456666666
No 288
>KOG0310 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=98.04 E-value=0.00056 Score=73.10 Aligned_cols=267 Identities=11% Similarity=0.125 Sum_probs=155.4
Q ss_pred CcccceEeccCC-CeEEEEEeeccccCCCCcceEEEEECCCCceee-cccCCCccccccccceEEecCCeEEEEEecCCC
Q 002209 189 AKLNFVTWSQDG-KHLAFSIRIDAEDSSSSKLRVWVADVDTGKARP-LFQSPDIYLNAIFDNFVWVNNSTLLVCTIPLLR 266 (953)
Q Consensus 189 ~~~~~~~wSPDG-~~laf~~~~~~~~~~~~~~~l~~~d~~~g~~~~-lt~~~~~~~~~~~~~~~wspDg~~l~~~~~~~~ 266 (953)
..+....|||.. -.+|.++ ...+-+++..+-..++ +..+... +.+..|-.||+.++..
T Consensus 27 ~~vssl~fsp~~P~d~aVt~----------S~rvqly~~~~~~~~k~~srFk~~-----v~s~~fR~DG~LlaaG----- 86 (487)
T KOG0310|consen 27 NSVSSLCFSPKHPYDFAVTS----------SVRVQLYSSVTRSVRKTFSRFKDV-----VYSVDFRSDGRLLAAG----- 86 (487)
T ss_pred CcceeEecCCCCCCceEEec----------ccEEEEEecchhhhhhhHHhhccc-----eeEEEeecCCeEEEcc-----
Confidence 468889999832 2345443 2344444544544444 3333332 6688898999999865
Q ss_pred CCCCCCCCCCCCCceeecCCCccccchhhhhhcCCcchhhhhhhhccceEEEEEc-CC-ceeEeCCC-CcccccccCCCC
Q 002209 267 GDPPKKPLVPLGPKMQSNEKRDIIQVRTFQDLLKDEYDEDLFDYYATTQLVLVSL-DG-TVKEIGPP-AVYTSLDPSPDE 343 (953)
Q Consensus 267 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~l~~~~~-~g-~~~~l~~~-~~~~~~~~SpDG 343 (953)
| ..+.+-++|. +. ..+.+... ..+....|+|++
T Consensus 87 -------------------------------------D-------~sG~V~vfD~k~r~iLR~~~ah~apv~~~~f~~~d 122 (487)
T KOG0310|consen 87 -------------------------------------D-------ESGHVKVFDMKSRVILRQLYAHQAPVHVTKFSPQD 122 (487)
T ss_pred -------------------------------------C-------CcCcEEEeccccHHHHHHHhhccCceeEEEecccC
Confidence 0 2234445555 32 23333333 566677899988
Q ss_pred cEEEEEEecCCccccccCCCCCcceEEEeccCceEE-EeccCCCcccCCccccccccCccceeeccCCCCceEEEEeccC
Q 002209 344 KYILISSIHRPYSFIVPCGRFPRQVGVWTTDGIFVR-ELCDLPLAEDIPIAFNSVRKGMRSINWRSDKPSTLYWAETQDG 422 (953)
Q Consensus 344 ~~l~~~~~~~~~~~~~~~~~~~~~i~~~d~~g~~~~-~l~~~~~~~~~p~~~~~~~~~~~~~~wspDg~~i~~~~~~~~~ 422 (953)
..++.+..++ ..+.+||+++..+. .+..+ ...+|..+|+|-...|++. |
T Consensus 123 ~t~l~s~sDd------------~v~k~~d~s~a~v~~~l~~h-------------tDYVR~g~~~~~~~hivvt-----G 172 (487)
T KOG0310|consen 123 NTMLVSGSDD------------KVVKYWDLSTAYVQAELSGH-------------TDYVRCGDISPANDHIVVT-----G 172 (487)
T ss_pred CeEEEecCCC------------ceEEEEEcCCcEEEEEecCC-------------cceeEeeccccCCCeEEEe-----c
Confidence 8887776543 36788999877652 22222 2456788999988878776 1
Q ss_pred CCcccccccCCeEEEEecCCCCCCCceEE-eecccccCCeeeccCCceEEEEEecccCceEEEEEcCCCCCCCcEEeecC
Q 002209 423 GDAKVEVTPRDIIYTQQAEPVQGEGPEIL-HKLDLRYGGISWCDDSLALVYESWYKTRRTRTWVISPGSKDVAPRILFDR 501 (953)
Q Consensus 423 ~~~~~~~~~~~~l~~~d~~~~~g~~~~~l-~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~l~~~d~~~~~~~~~~~~~~ 501 (953)
+.++.|.+||. .....+.+ .++...+..+.+-|.|..|+.++ +. .+.++|+.+|. +.......
T Consensus 173 -------sYDg~vrl~Dt---R~~~~~v~elnhg~pVe~vl~lpsgs~iasAg---Gn--~vkVWDl~~G~-qll~~~~~ 236 (487)
T KOG0310|consen 173 -------SYDGKVRLWDT---RSLTSRVVELNHGCPVESVLALPSGSLIASAG---GN--SVKVWDLTTGG-QLLTSMFN 236 (487)
T ss_pred -------CCCceEEEEEe---ccCCceeEEecCCCceeeEEEcCCCCEEEEcC---CC--eEEEEEecCCc-eehhhhhc
Confidence 33457888986 22212333 46677788899999999888763 22 45555666442 11111111
Q ss_pred CCccccCCCCCCCeEeccCCCEEEEEeeeccCCCcEEEEecCCCCCCCCCCeEEEEECCCCceEEEeccCcccceeeeEe
Q 002209 502 SSEDVYSDPGSPMMRRTSTGTYVIAKIKKENDEGTYILLNGNGATPEGNIPFLDLFDINTGSKERIWESDKEKYYETTVA 581 (953)
Q Consensus 502 ~~~~~~~~~~~p~~~~SpDG~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~d~~~~~~~~l~~~~~~~~~~~~~~ 581 (953)
+...+.+ +.+..||+.|+....++ ++.+||..+=+..-=|.-.+. +..
T Consensus 237 H~KtVTc------L~l~s~~~rLlS~sLD~---------------------~VKVfd~t~~Kvv~s~~~~~p-----vLs 284 (487)
T KOG0310|consen 237 HNKTVTC------LRLASDSTRLLSGSLDR---------------------HVKVFDTTNYKVVHSWKYPGP-----VLS 284 (487)
T ss_pred ccceEEE------EEeecCCceEeeccccc---------------------ceEEEEccceEEEEeeecccc-----eee
Confidence 2222333 66777888887776543 477888554443333332221 221
Q ss_pred eccCCccccccccCCEEEEEEec
Q 002209 582 LMSDQTEGDLYLNQLKILTSKES 604 (953)
Q Consensus 582 ~~~~~~~~~~s~dg~~l~~~~~~ 604 (953)
.++|||++.++.-.+.
T Consensus 285 -------iavs~dd~t~viGmsn 300 (487)
T KOG0310|consen 285 -------IAVSPDDQTVVIGMSN 300 (487)
T ss_pred -------EEecCCCceEEEeccc
Confidence 3578888877764443
No 289
>KOG0306 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=98.03 E-value=0.00055 Score=76.81 Aligned_cols=201 Identities=16% Similarity=0.097 Sum_probs=122.2
Q ss_pred CcccceEeccCCCeEEEEEeeccccCCCCcceEEEEECCCCceeecccCCCccccccccceEEecCCeEEEEEecCCCCC
Q 002209 189 AKLNFVTWSQDGKHLAFSIRIDAEDSSSSKLRVWVADVDTGKARPLFQSPDIYLNAIFDNFVWVNNSTLLVCTIPLLRGD 268 (953)
Q Consensus 189 ~~~~~~~wSPDG~~laf~~~~~~~~~~~~~~~l~~~d~~~g~~~~lt~~~~~~~~~~~~~~~wspDg~~l~~~~~~~~~~ 268 (953)
..+....+|.|...|+. . .+..|-+|+.++.+..+-..... +-...|-|.++.|+...
T Consensus 374 ~dVRsl~vS~d~~~~~S-g---------a~~SikiWn~~t~kciRTi~~~y------~l~~~Fvpgd~~Iv~G~------ 431 (888)
T KOG0306|consen 374 SDVRSLCVSSDSILLAS-G---------AGESIKIWNRDTLKCIRTITCGY------ILASKFVPGDRYIVLGT------ 431 (888)
T ss_pred hheeEEEeecCceeeee-c---------CCCcEEEEEccCcceeEEecccc------EEEEEecCCCceEEEec------
Confidence 37888899977654443 2 24567777777766543322222 44666889998888661
Q ss_pred CCCCCCCCCCCceeecCCCccccchhhhhhcCCcchhhhhhhhccceEEEEEc-CCce-eEeCCC-CcccccccCCCCcE
Q 002209 269 PPKKPLVPLGPKMQSNEKRDIIQVRTFQDLLKDEYDEDLFDYYATTQLVLVSL-DGTV-KEIGPP-AVYTSLDPSPDEKY 345 (953)
Q Consensus 269 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~l~~~~~-~g~~-~~l~~~-~~~~~~~~SpDG~~ 345 (953)
..+.|-++|+ +... ..+... +.+.+++.+||++.
T Consensus 432 -------------------------------------------k~Gel~vfdlaS~~l~Eti~AHdgaIWsi~~~pD~~g 468 (888)
T KOG0306|consen 432 -------------------------------------------KNGELQVFDLASASLVETIRAHDGAIWSISLSPDNKG 468 (888)
T ss_pred -------------------------------------------cCCceEEEEeehhhhhhhhhccccceeeeeecCCCCc
Confidence 3356777787 5532 222223 77888999999999
Q ss_pred EEEEEecCCccccccCCCCCcceEEEecc------CceEEEeccCCCcccCCccccccccCccceeeccCCCCceEEEEe
Q 002209 346 ILISSIHRPYSFIVPCGRFPRQVGVWTTD------GIFVRELCDLPLAEDIPIAFNSVRKGMRSINWRSDKPSTLYWAET 419 (953)
Q Consensus 346 l~~~~~~~~~~~~~~~~~~~~~i~~~d~~------g~~~~~l~~~~~~~~~p~~~~~~~~~~~~~~wspDg~~i~~~~~~ 419 (953)
.+..+.+. .|..||.. |.+.+.|.-.... .. .....+..+++||||+.++...
T Consensus 469 ~vT~saDk-------------tVkfWdf~l~~~~~gt~~k~lsl~~~r---tL---el~ddvL~v~~Spdgk~LaVsL-- 527 (888)
T KOG0306|consen 469 FVTGSADK-------------TVKFWDFKLVVSVPGTQKKVLSLKHTR---TL---ELEDDVLCVSVSPDGKLLAVSL-- 527 (888)
T ss_pred eEEecCCc-------------EEEEEeEEEEeccCcccceeeeeccce---EE---eccccEEEEEEcCCCcEEEEEe--
Confidence 99888665 66677653 2222222211100 00 0112335689999999887651
Q ss_pred ccCCCcccccccCCeEEEEecCCCCCCCceEEeecccccCCeeeccCCceEEEEEecccCceEEEEEcCCC
Q 002209 420 QDGGDAKVEVTPRDIIYTQQAEPVQGEGPEILHKLDLRYGGISWCDDSLALVYESWYKTRRTRTWVISPGS 490 (953)
Q Consensus 420 ~~~~~~~~~~~~~~~l~~~d~~~~~g~~~~~l~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~l~~~d~~~ 490 (953)
. +..-.+|.+| +=.-...|.++...+.++..|||++.|+..+-+.+ -.+|-+|...
T Consensus 528 L---------dnTVkVyflD----tlKFflsLYGHkLPV~smDIS~DSklivTgSADKn--VKiWGLdFGD 583 (888)
T KOG0306|consen 528 L---------DNTVKVYFLD----TLKFFLSLYGHKLPVLSMDISPDSKLIVTGSADKN--VKIWGLDFGD 583 (888)
T ss_pred c---------cCeEEEEEec----ceeeeeeecccccceeEEeccCCcCeEEeccCCCc--eEEeccccch
Confidence 1 2233556555 11112235677777888999999999998776654 4888887655
No 290
>PRK04940 hypothetical protein; Provisional
Probab=98.02 E-value=0.00016 Score=69.21 Aligned_cols=116 Identities=10% Similarity=0.071 Sum_probs=71.7
Q ss_pred CcEEEEEeChHHHHHHHHHHhCCCcccEEEEcccCCCCCCC--C-cCcccccchhhhhHHHHHhcCcccccCCCCCcEEE
Q 002209 759 SKIAVGGHSYGAFMTANLLAHAPHLFCCGIARSGAYNRTLT--P-FGFQNEDRTLWEATSTYVEMSPFMSANKLKKPILL 835 (953)
Q Consensus 759 ~~i~l~G~S~GG~~a~~~a~~~p~~~~a~v~~~~~~d~~~~--~-~~~~~~~~~~~~~~~~~~~~sp~~~~~~i~~P~Li 835 (953)
++++|+|.|+||+.|.+++.++. ++| |++.|.+..... . .+.+.. ...+ ..+...+.. .+-....++
T Consensus 60 ~~~~liGSSLGGyyA~~La~~~g--~~a-VLiNPAv~P~~~L~~~ig~~~~-y~~~-~~~h~~eL~-----~~~p~r~~v 129 (180)
T PRK04940 60 ERPLICGVGLGGYWAERIGFLCG--IRQ-VIFNPNLFPEENMEGKIDRPEE-YADI-ATKCVTNFR-----EKNRDRCLV 129 (180)
T ss_pred CCcEEEEeChHHHHHHHHHHHHC--CCE-EEECCCCChHHHHHHHhCCCcc-hhhh-hHHHHHHhh-----hcCcccEEE
Confidence 47999999999999999999983 554 556676543110 0 011111 1111 111111111 011234699
Q ss_pred EEeCCCCCCCCchHHHHHHHHHHHhCCCcEEEEEeCCCCccCCCcccHHHHHHHHHHHHH
Q 002209 836 VHGEEDNNSGTLTMQSDRFFNALKGHGALCRLVILPFESHGYAARESIMHVLWETDRWLQ 895 (953)
Q Consensus 836 ~~G~~D~~v~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~H~~~~~~~~~~~~~~i~~fl~ 895 (953)
+..+.|++.+ +.++.+.|... .+..+.+|++|.|.. .+.....|.+|+.
T Consensus 130 llq~gDEvLD--yr~a~~~y~~~------y~~~v~~GGdH~f~~---fe~~l~~I~~F~~ 178 (180)
T PRK04940 130 ILSRNDEVLD--SQRTAEELHPY------YEIVWDEEQTHKFKN---ISPHLQRIKAFKT 178 (180)
T ss_pred EEeCCCcccC--HHHHHHHhccC------ceEEEECCCCCCCCC---HHHHHHHHHHHHh
Confidence 9999999998 77776665432 247789999999864 4566788888874
No 291
>PLN02919 haloacid dehalogenase-like hydrolase family protein
Probab=98.00 E-value=0.0039 Score=78.38 Aligned_cols=126 Identities=11% Similarity=0.059 Sum_probs=68.4
Q ss_pred cccccCCCCcEEEEEEecCCccccccCCCCCcceEEEeccCceEEEeccCCCcccC--CccccccccCccceeeccCCCC
Q 002209 335 TSLDPSPDEKYILISSIHRPYSFIVPCGRFPRQVGVWTTDGIFVRELCDLPLAEDI--PIAFNSVRKGMRSINWRSDKPS 412 (953)
Q Consensus 335 ~~~~~SpDG~~l~~~~~~~~~~~~~~~~~~~~~i~~~d~~g~~~~~l~~~~~~~~~--p~~~~~~~~~~~~~~wspDg~~ 412 (953)
..++++|++..|+++... ...|++|+..++..+.+......... ..........+..++|+|||+.
T Consensus 686 ~gVa~dp~~g~LyVad~~------------~~~I~v~d~~~g~v~~~~G~G~~~~~~g~~~~~~~~~~P~GIavspdG~~ 753 (1057)
T PLN02919 686 WDVCFEPVNEKVYIAMAG------------QHQIWEYNISDGVTRVFSGDGYERNLNGSSGTSTSFAQPSGISLSPDLKE 753 (1057)
T ss_pred eEEEEecCCCeEEEEECC------------CCeEEEEECCCCeEEEEecCCccccCCCCccccccccCccEEEEeCCCCE
Confidence 457899977666665422 23789999877665544321100000 0000111234567999999987
Q ss_pred ceEEEEeccCCCcccccccCCeEEEEecCCCCCCCceEEeecc----------------------cccCCeeeccCCceE
Q 002209 413 TLYWAETQDGGDAKVEVTPRDIIYTQQAEPVQGEGPEILHKLD----------------------LRYGGISWCDDSLAL 470 (953)
Q Consensus 413 i~~~~~~~~~~~~~~~~~~~~~l~~~d~~~~~g~~~~~l~~~~----------------------~~~~~~~~SpDg~~l 470 (953)
|++. + ...+.|.++|. +++....+.... ....++++++||+ |
T Consensus 754 LYVA-D-----------s~n~~Irv~D~---~tg~~~~~~gg~~~~~~~l~~fG~~dG~g~~~~l~~P~Gvavd~dG~-L 817 (1057)
T PLN02919 754 LYIA-D-----------SESSSIRALDL---KTGGSRLLAGGDPTFSDNLFKFGDHDGVGSEVLLQHPLGVLCAKDGQ-I 817 (1057)
T ss_pred EEEE-E-----------CCCCeEEEEEC---CCCcEEEEEecccccCcccccccCCCCchhhhhccCCceeeEeCCCc-E
Confidence 6554 2 23457888885 333322222110 1124578999997 4
Q ss_pred EEEEecccCceEEEEEcCCCC
Q 002209 471 VYESWYKTRRTRTWVISPGSK 491 (953)
Q Consensus 471 ~~~~~~~~~~~~l~~~d~~~~ 491 (953)
+++ ...+ .+|.++|.+++
T Consensus 818 YVA-Ds~N--~rIrviD~~tg 835 (1057)
T PLN02919 818 YVA-DSYN--HKIKKLDPATK 835 (1057)
T ss_pred EEE-ECCC--CEEEEEECCCC
Confidence 433 3322 37888888774
No 292
>PLN02919 haloacid dehalogenase-like hydrolase family protein
Probab=98.00 E-value=0.0029 Score=79.51 Aligned_cols=212 Identities=11% Similarity=0.055 Sum_probs=116.0
Q ss_pred ccceEeccCCCeEEEEEeeccccCCCCcceEEEEECCCCceeecccCCCc-------------cccccccceEEecCCeE
Q 002209 191 LNFVTWSQDGKHLAFSIRIDAEDSSSSKLRVWVADVDTGKARPLFQSPDI-------------YLNAIFDNFVWVNNSTL 257 (953)
Q Consensus 191 ~~~~~wSPDG~~laf~~~~~~~~~~~~~~~l~~~d~~~g~~~~lt~~~~~-------------~~~~~~~~~~wspDg~~ 257 (953)
...+++.++|..|+++- .++..|.++|..++..+.+...+.. .++. ...++++|++..
T Consensus 626 P~GIavd~~gn~LYVaD--------t~n~~Ir~id~~~~~V~tlag~G~~g~~~~gg~~~~~~~ln~-P~gVa~dp~~g~ 696 (1057)
T PLN02919 626 PQGLAYNAKKNLLYVAD--------TENHALREIDFVNETVRTLAGNGTKGSDYQGGKKGTSQVLNS-PWDVCFEPVNEK 696 (1057)
T ss_pred CcEEEEeCCCCEEEEEe--------CCCceEEEEecCCCEEEEEeccCcccCCCCCChhhhHhhcCC-CeEEEEecCCCe
Confidence 45678888888766542 1356788899888776655321100 0011 125778886666
Q ss_pred EEEEecCCCCCCCCCCCCCCCCceeecCCCccccchhhhhhcCCcchhhhhhhhccceEEEEEc-CCceeEeCCC-----
Q 002209 258 LVCTIPLLRGDPPKKPLVPLGPKMQSNEKRDIIQVRTFQDLLKDEYDEDLFDYYATTQLVLVSL-DGTVKEIGPP----- 331 (953)
Q Consensus 258 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~l~~~~~-~g~~~~l~~~----- 331 (953)
|+++.. +..+|++++. +|....+...
T Consensus 697 LyVad~------------------------------------------------~~~~I~v~d~~~g~v~~~~G~G~~~~ 728 (1057)
T PLN02919 697 VYIAMA------------------------------------------------GQHQIWEYNISDGVTRVFSGDGYERN 728 (1057)
T ss_pred EEEEEC------------------------------------------------CCCeEEEEECCCCeEEEEecCCcccc
Confidence 665510 2345666665 5443322110
Q ss_pred -----------CcccccccCCCCcEEEEEEecCCccccccCCCCCcceEEEeccCceEEEeccCCC-c-ccC-Cc-----
Q 002209 332 -----------AVYTSLDPSPDEKYILISSIHRPYSFIVPCGRFPRQVGVWTTDGIFVRELCDLPL-A-EDI-PI----- 392 (953)
Q Consensus 332 -----------~~~~~~~~SpDG~~l~~~~~~~~~~~~~~~~~~~~~i~~~d~~g~~~~~l~~~~~-~-~~~-p~----- 392 (953)
.....++++|||++|+++... ...|++||++++..+.+..... . ... ..
T Consensus 729 ~~g~~~~~~~~~~P~GIavspdG~~LYVADs~------------n~~Irv~D~~tg~~~~~~gg~~~~~~~l~~fG~~dG 796 (1057)
T PLN02919 729 LNGSSGTSTSFAQPSGISLSPDLKELYIADSE------------SSSIRALDLKTGGSRLLAGGDPTFSDNLFKFGDHDG 796 (1057)
T ss_pred CCCCccccccccCccEEEEeCCCCEEEEEECC------------CCeEEEEECCCCcEEEEEecccccCcccccccCCCC
Confidence 234568899999988776522 3489999998655443322100 0 000 00
Q ss_pred -cccccccCccceeeccCCCCceEEEEeccCCCcccccccCCeEEEEecCCCCCCCceEEeecc--------------cc
Q 002209 393 -AFNSVRKGMRSINWRSDKPSTLYWAETQDGGDAKVEVTPRDIIYTQQAEPVQGEGPEILHKLD--------------LR 457 (953)
Q Consensus 393 -~~~~~~~~~~~~~wspDg~~i~~~~~~~~~~~~~~~~~~~~~l~~~d~~~~~g~~~~~l~~~~--------------~~ 457 (953)
........+..+++++||+ +|.++ ...+.|.++|. +++....+.... ..
T Consensus 797 ~g~~~~l~~P~Gvavd~dG~--LYVAD-----------s~N~rIrviD~---~tg~v~tiaG~G~~G~~dG~~~~a~l~~ 860 (1057)
T PLN02919 797 VGSEVLLQHPLGVLCAKDGQ--IYVAD-----------SYNHKIKKLDP---ATKRVTTLAGTGKAGFKDGKALKAQLSE 860 (1057)
T ss_pred chhhhhccCCceeeEeCCCc--EEEEE-----------CCCCEEEEEEC---CCCeEEEEeccCCcCCCCCcccccccCC
Confidence 0001112346789999996 45533 23457888884 444443332110 12
Q ss_pred cCCeeeccCCceEEEEEecccCceEEEEEcCCCC
Q 002209 458 YGGISWCDDSLALVYESWYKTRRTRTWVISPGSK 491 (953)
Q Consensus 458 ~~~~~~SpDg~~l~~~~~~~~~~~~l~~~d~~~~ 491 (953)
..++++++||+ |+++ +.. +.+|.++++.++
T Consensus 861 P~GIavd~dG~-lyVa-Dt~--Nn~Irvid~~~~ 890 (1057)
T PLN02919 861 PAGLALGENGR-LFVA-DTN--NSLIRYLDLNKG 890 (1057)
T ss_pred ceEEEEeCCCC-EEEE-ECC--CCEEEEEECCCC
Confidence 34579999997 4433 332 237888888875
No 293
>KOG0647 consensus mRNA export protein (contains WD40 repeats) [RNA processing and modification]
Probab=98.00 E-value=0.00036 Score=70.09 Aligned_cols=247 Identities=13% Similarity=0.077 Sum_probs=126.8
Q ss_pred eceEEEEccCCCCCCceeeeecCCCCCcccceEeccCCCeEEEEEeeccccCCCCcceEEEEECCCCceeecccCCCccc
Q 002209 163 TGIGIHQLFPDGKLGQEIEIQGFPDGAKLNFVTWSQDGKHLAFSIRIDAEDSSSSKLRVWVADVDTGKARPLFQSPDIYL 242 (953)
Q Consensus 163 ~~i~i~~~~~~g~~~~~~~l~~~~~~~~~~~~~wSPDG~~laf~~~~~~~~~~~~~~~l~~~d~~~g~~~~lt~~~~~~~ 242 (953)
+.+++|++..+|.... +....+ ...+....||-||..++. .. -..++-++|+.+|+..++..+...
T Consensus 50 ~tVR~wevq~~g~~~~-ka~~~~--~~PvL~v~WsddgskVf~-g~--------~Dk~~k~wDL~S~Q~~~v~~Hd~p-- 115 (347)
T KOG0647|consen 50 GTVRIWEVQNSGQLVP-KAQQSH--DGPVLDVCWSDDGSKVFS-GG--------CDKQAKLWDLASGQVSQVAAHDAP-- 115 (347)
T ss_pred CceEEEEEecCCcccc-hhhhcc--CCCeEEEEEccCCceEEe-ec--------cCCceEEEEccCCCeeeeeecccc--
Confidence 3678999976554332 222222 246888999999965544 32 356778889999999888765553
Q ss_pred cccccceEEecCCe--EEEEEecCCCCCC--CCCCCCCC-----CCceeecCCCccccchhhhhhcCCcchhhhhhhhcc
Q 002209 243 NAIFDNFVWVNNST--LLVCTIPLLRGDP--PKKPLVPL-----GPKMQSNEKRDIIQVRTFQDLLKDEYDEDLFDYYAT 313 (953)
Q Consensus 243 ~~~~~~~~wspDg~--~l~~~~~~~~~~~--~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~ 313 (953)
+..+.|-+... .|+..+=++.... .+. ..|. ..+++..+- . .+-...-...
T Consensus 116 ---vkt~~wv~~~~~~cl~TGSWDKTlKfWD~R~-~~pv~t~~LPeRvYa~Dv---------------~-~pm~vVata~ 175 (347)
T KOG0647|consen 116 ---VKTCHWVPGMNYQCLVTGSWDKTLKFWDTRS-SNPVATLQLPERVYAADV---------------L-YPMAVVATAE 175 (347)
T ss_pred ---eeEEEEecCCCcceeEecccccceeecccCC-CCeeeeeeccceeeehhc---------------c-CceeEEEecC
Confidence 77899986665 3443221111110 000 0000 001111110 0 0000000144
Q ss_pred ceEEEEEc-CC--ceeEeCCC--CcccccccCCCCcEEEEEEecCCccccccCCCCCcceEEEeccCceEE-Eec--cCC
Q 002209 314 TQLVLVSL-DG--TVKEIGPP--AVYTSLDPSPDEKYILISSIHRPYSFIVPCGRFPRQVGVWTTDGIFVR-ELC--DLP 385 (953)
Q Consensus 314 ~~l~~~~~-~g--~~~~l~~~--~~~~~~~~SpDG~~l~~~~~~~~~~~~~~~~~~~~~i~~~d~~g~~~~-~l~--~~~ 385 (953)
..|.+|+| ++ +.+++..+ -.++.++.-+|.+.-|..+..+ .+.+..++....+ ..+ -+.
T Consensus 176 r~i~vynL~n~~te~k~~~SpLk~Q~R~va~f~d~~~~alGsiEG-------------rv~iq~id~~~~~~nFtFkCHR 242 (347)
T KOG0647|consen 176 RHIAVYNLENPPTEFKRIESPLKWQTRCVACFQDKDGFALGSIEG-------------RVAIQYIDDPNPKDNFTFKCHR 242 (347)
T ss_pred CcEEEEEcCCCcchhhhhcCcccceeeEEEEEecCCceEeeeecc-------------eEEEEecCCCCccCceeEEEec
Confidence 67888888 55 44455444 4566777777776666665332 3444444321000 000 000
Q ss_pred CcccCCccccccccCccceeeccCCCCceEEEEeccCCCcccccccCCeEEEEecCCCCCCCceEEe--ecccccCCeee
Q 002209 386 LAEDIPIAFNSVRKGMRSINWRSDKPSTLYWAETQDGGDAKVEVTPRDIIYTQQAEPVQGEGPEILH--KLDLRYGGISW 463 (953)
Q Consensus 386 ~~~~~p~~~~~~~~~~~~~~wspDg~~i~~~~~~~~~~~~~~~~~~~~~l~~~d~~~~~g~~~~~l~--~~~~~~~~~~~ 463 (953)
... + .+..-..+.+++|.|.-..++-. +.++..-.||. + ...+..+ .....+..-.|
T Consensus 243 ~~~--~--~~~~VYaVNsi~FhP~hgtlvTa-------------GsDGtf~FWDk---d-ar~kLk~s~~~~qpItcc~f 301 (347)
T KOG0647|consen 243 STN--S--VNDDVYAVNSIAFHPVHGTLVTA-------------GSDGTFSFWDK---D-ARTKLKTSETHPQPITCCSF 301 (347)
T ss_pred cCC--C--CCCceEEecceEeecccceEEEe-------------cCCceEEEecc---h-hhhhhhccCcCCCccceeEe
Confidence 000 0 00111234568888865555444 45556777773 2 2222222 33555667789
Q ss_pred ccCCceEEEEEecc
Q 002209 464 CDDSLALVYESWYK 477 (953)
Q Consensus 464 SpDg~~l~~~~~~~ 477 (953)
..+|..++|+...+
T Consensus 302 n~~G~ifaYA~gYD 315 (347)
T KOG0647|consen 302 NRNGSIFAYALGYD 315 (347)
T ss_pred cCCCCEEEEEeecc
Confidence 99999999987544
No 294
>KOG0310 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=97.99 E-value=0.00053 Score=73.31 Aligned_cols=221 Identities=14% Similarity=0.114 Sum_probs=134.4
Q ss_pred cccceEeccCCCeEEEEEeeccccCCCCcceEEEEECCCCceeecccCCCccccccccceEEecCCeEEEEEecCCCCCC
Q 002209 190 KLNFVTWSQDGKHLAFSIRIDAEDSSSSKLRVWVADVDTGKARPLFQSPDIYLNAIFDNFVWVNNSTLLVCTIPLLRGDP 269 (953)
Q Consensus 190 ~~~~~~wSPDG~~laf~~~~~~~~~~~~~~~l~~~d~~~g~~~~lt~~~~~~~~~~~~~~~wspDg~~l~~~~~~~~~~~ 269 (953)
.+....|-.||+.+|- ++..+.+-+.|..+..+.+....... .+....|+|++..++.+..+.
T Consensus 70 ~v~s~~fR~DG~Llaa---------GD~sG~V~vfD~k~r~iLR~~~ah~a----pv~~~~f~~~d~t~l~s~sDd---- 132 (487)
T KOG0310|consen 70 VVYSVDFRSDGRLLAA---------GDESGHVKVFDMKSRVILRQLYAHQA----PVHVTKFSPQDNTMLVSGSDD---- 132 (487)
T ss_pred ceeEEEeecCCeEEEc---------cCCcCcEEEeccccHHHHHHHhhccC----ceeEEEecccCCeEEEecCCC----
Confidence 5788888899998886 55667777788555333333332222 266788998887777552110
Q ss_pred CCCCCCCCCCceeecCCCccccchhhhhhcCCcchhhhhhhhccceEEEEEc-CCcee-EeCCC-CcccccccCCCCcEE
Q 002209 270 PKKPLVPLGPKMQSNEKRDIIQVRTFQDLLKDEYDEDLFDYYATTQLVLVSL-DGTVK-EIGPP-AVYTSLDPSPDEKYI 346 (953)
Q Consensus 270 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~l~~~~~-~g~~~-~l~~~-~~~~~~~~SpDG~~l 346 (953)
. .+-.+|+ ++.++ .+... +.+...+|+|-..+|
T Consensus 133 ------------------------------------------~--v~k~~d~s~a~v~~~l~~htDYVR~g~~~~~~~hi 168 (487)
T KOG0310|consen 133 ------------------------------------------K--VVKYWDLSTAYVQAELSGHTDYVRCGDISPANDHI 168 (487)
T ss_pred ------------------------------------------c--eEEEEEcCCcEEEEEecCCcceeEeeccccCCCeE
Confidence 1 1112344 33332 33444 788999999999999
Q ss_pred EEEEecCCccccccCCCCCcceEEEeccCc--eEEEeccCCCcccCCccccccccCccceeeccCCCCceEEEEeccCCC
Q 002209 347 LISSIHRPYSFIVPCGRFPRQVGVWTTDGI--FVRELCDLPLAEDIPIAFNSVRKGMRSINWRSDKPSTLYWAETQDGGD 424 (953)
Q Consensus 347 ~~~~~~~~~~~~~~~~~~~~~i~~~d~~g~--~~~~l~~~~~~~~~p~~~~~~~~~~~~~~wspDg~~i~~~~~~~~~~~ 424 (953)
+++. .+.+.|.+||+... ....+... .| +.++-+-|.|..|+-.
T Consensus 169 vvtG------------sYDg~vrl~DtR~~~~~v~elnhg-----~p---------Ve~vl~lpsgs~iasA-------- 214 (487)
T KOG0310|consen 169 VVTG------------SYDGKVRLWDTRSLTSRVVELNHG-----CP---------VESVLALPSGSLIASA-------- 214 (487)
T ss_pred EEec------------CCCceEEEEEeccCCceeEEecCC-----Cc---------eeeEEEcCCCCEEEEc--------
Confidence 8885 34669999999743 33333321 12 2456777888766654
Q ss_pred cccccccCCeEEEEecCCCCCCCce-EEeecccccCCeeeccCCceEEEEEecccCceEEEEEcCCCCCCCcEEee--cC
Q 002209 425 AKVEVTPRDIIYTQQAEPVQGEGPE-ILHKLDLRYGGISWCDDSLALVYESWYKTRRTRTWVISPGSKDVAPRILF--DR 501 (953)
Q Consensus 425 ~~~~~~~~~~l~~~d~~~~~g~~~~-~l~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~l~~~d~~~~~~~~~~~~--~~ 501 (953)
+.+.+-+||+ .+|++.. ...++.-.+.++.+..|+.+|+.++-+. ++-+++..+ -+.+. .-
T Consensus 215 ------gGn~vkVWDl--~~G~qll~~~~~H~KtVTcL~l~s~~~rLlS~sLD~----~VKVfd~t~----~Kvv~s~~~ 278 (487)
T KOG0310|consen 215 ------GGNSVKVWDL--TTGGQLLTSMFNHNKTVTCLRLASDSTRLLSGSLDR----HVKVFDTTN----YKVVHSWKY 278 (487)
T ss_pred ------CCCeEEEEEe--cCCceehhhhhcccceEEEEEeecCCceEeeccccc----ceEEEEccc----eEEEEeeec
Confidence 3457889997 3354322 2234566678889999999988776443 344555333 22222 11
Q ss_pred CCccccCCCCCCCeEeccCCCEEEEEe
Q 002209 502 SSEDVYSDPGSPMMRRTSTGTYVIAKI 528 (953)
Q Consensus 502 ~~~~~~~~~~~p~~~~SpDG~~l~~~~ 528 (953)
+.. +.+ +..|||+..++..-
T Consensus 279 ~~p-vLs------iavs~dd~t~viGm 298 (487)
T KOG0310|consen 279 PGP-VLS------IAVSPDDQTVVIGM 298 (487)
T ss_pred ccc-eee------EEecCCCceEEEec
Confidence 111 111 67899999988775
No 295
>KOG0316 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=97.98 E-value=0.00031 Score=67.93 Aligned_cols=193 Identities=15% Similarity=0.120 Sum_probs=108.9
Q ss_pred CCCCceecCCCCEEEEEecCCCCCccccccccceeceEEecCCCCCCcceeeeeceEEEEccCCCCCCceeeeecCCCCC
Q 002209 110 PLPALSFSPQRDKILFLKRRALPPLEELARPEEKLAGLRIDGKCNTRSRMSFYTGIGIHQLFPDGKLGQEIEIQGFPDGA 189 (953)
Q Consensus 110 ~~~~~~~SPDG~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~i~~~~~~g~~~~~~~l~~~~~~~ 189 (953)
.+..+.|.-||++.+....+ ..|.+|+... |.. -+...+ +|.
T Consensus 19 aV~avryN~dGnY~ltcGsd---------------------------------rtvrLWNp~r-g~l--iktYsg--hG~ 60 (307)
T KOG0316|consen 19 AVRAVRYNVDGNYCLTCGSD---------------------------------RTVRLWNPLR-GAL--IKTYSG--HGH 60 (307)
T ss_pred ceEEEEEccCCCEEEEcCCC---------------------------------ceEEeecccc-cce--eeeecC--CCc
Confidence 46678899999998776654 2578888632 211 112222 344
Q ss_pred cccceEeccCCCeEEEEEeeccccCCCCcceEEEEECCCCceeecccCCCccccccccceEEecCCeEEEEEecCCCCCC
Q 002209 190 KLNFVTWSQDGKHLAFSIRIDAEDSSSSKLRVWVADVDTGKARPLFQSPDIYLNAIFDNFVWVNNSTLLVCTIPLLRGDP 269 (953)
Q Consensus 190 ~~~~~~wSPDG~~laf~~~~~~~~~~~~~~~l~~~d~~~g~~~~lt~~~~~~~~~~~~~~~wspDg~~l~~~~~~~~~~~ 269 (953)
.+....-|.|...++- ..+...+++||+++|+..+-....... +..+.|..+...++...-+...
T Consensus 61 EVlD~~~s~Dnskf~s---------~GgDk~v~vwDV~TGkv~Rr~rgH~aq----VNtV~fNeesSVv~SgsfD~s~-- 125 (307)
T KOG0316|consen 61 EVLDAALSSDNSKFAS---------CGGDKAVQVWDVNTGKVDRRFRGHLAQ----VNTVRFNEESSVVASGSFDSSV-- 125 (307)
T ss_pred eeeecccccccccccc---------CCCCceEEEEEcccCeeeeecccccce----eeEEEecCcceEEEecccccee--
Confidence 7888888889988876 446788999999999875544444333 6778887777766654222111
Q ss_pred CCCCCCCCCCceeecCCCccccchhhhh---hcCCc--chhhhhhhhccceEEEEEc-CCceeEeCCCCcccccccCCCC
Q 002209 270 PKKPLVPLGPKMQSNEKRDIIQVRTFQD---LLKDE--YDEDLFDYYATTQLVLVSL-DGTVKEIGPPAVYTSLDPSPDE 343 (953)
Q Consensus 270 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~--~d~~~~~~~~~~~l~~~~~-~g~~~~l~~~~~~~~~~~SpDG 343 (953)
+.|+-......+.....+ .+..- .+-.+..-...+.+..+|+ .|....=.-+..++++.||+||
T Consensus 126 ----------r~wDCRS~s~ePiQildea~D~V~Si~v~~heIvaGS~DGtvRtydiR~G~l~sDy~g~pit~vs~s~d~ 195 (307)
T KOG0316|consen 126 ----------RLWDCRSRSFEPIQILDEAKDGVSSIDVAEHEIVAGSVDGTVRTYDIRKGTLSSDYFGHPITSVSFSKDG 195 (307)
T ss_pred ----------EEEEcccCCCCccchhhhhcCceeEEEecccEEEeeccCCcEEEEEeecceeehhhcCCcceeEEecCCC
Confidence 112211111111111000 00000 0000000012244556666 5543322222567889999999
Q ss_pred cEEEEEEecCCccccccCCCCCcceEEEeccCceE
Q 002209 344 KYILISSIHRPYSFIVPCGRFPRQVGVWTTDGIFV 378 (953)
Q Consensus 344 ~~l~~~~~~~~~~~~~~~~~~~~~i~~~d~~g~~~ 378 (953)
..++..+.+. .+.+.|.++++.
T Consensus 196 nc~La~~l~s-------------tlrLlDk~tGkl 217 (307)
T KOG0316|consen 196 NCSLASSLDS-------------TLRLLDKETGKL 217 (307)
T ss_pred CEEEEeeccc-------------eeeecccchhHH
Confidence 9999888554 888888886653
No 296
>COG3386 Gluconolactonase [Carbohydrate transport and metabolism]
Probab=97.98 E-value=0.0047 Score=65.83 Aligned_cols=145 Identities=13% Similarity=0.060 Sum_probs=80.3
Q ss_pred cceEEEEEc-CCceeEeCCCCcccccccCCCCcEEEEEEecCCccccccCCCCCcceEEEeccCceE-EEeccCCCcccC
Q 002209 313 TTQLVLVSL-DGTVKEIGPPAVYTSLDPSPDEKYILISSIHRPYSFIVPCGRFPRQVGVWTTDGIFV-RELCDLPLAEDI 390 (953)
Q Consensus 313 ~~~l~~~~~-~g~~~~l~~~~~~~~~~~SpDG~~l~~~~~~~~~~~~~~~~~~~~~i~~~d~~g~~~-~~l~~~~~~~~~ 390 (953)
.+.|++++. +|+.+.+..+..+.+...--++..|+... + .+++++.+.+.. +.++..... .
T Consensus 46 ~~~i~r~~~~~g~~~~~~~p~~~~~~~~~d~~g~Lv~~~-~--------------g~~~~~~~~~~~~t~~~~~~~~--~ 108 (307)
T COG3386 46 GGRIHRLDPETGKKRVFPSPGGFSSGALIDAGGRLIACE-H--------------GVRLLDPDTGGKITLLAEPEDG--L 108 (307)
T ss_pred CCeEEEecCCcCceEEEECCCCcccceeecCCCeEEEEc-c--------------ccEEEeccCCceeEEeccccCC--C
Confidence 367889998 78777777664444443333343444332 2 577777764444 444332211 1
Q ss_pred CccccccccCccceeeccCCCCceEEEEeccCC-CcccccccCCeEEEEecCCCCCCCceEEeecccccCCeeeccCCce
Q 002209 391 PIAFNSVRKGMRSINWRSDKPSTLYWAETQDGG-DAKVEVTPRDIIYTQQAEPVQGEGPEILHKLDLRYGGISWCDDSLA 469 (953)
Q Consensus 391 p~~~~~~~~~~~~~~wspDg~~i~~~~~~~~~~-~~~~~~~~~~~l~~~d~~~~~g~~~~~l~~~~~~~~~~~~SpDg~~ 469 (953)
+. .........|||. ++|. ..... ...........||.++. .++..+.+...-...++++|||||+.
T Consensus 109 ~~------~r~ND~~v~pdG~-~wfg--t~~~~~~~~~~~~~~G~lyr~~p---~g~~~~l~~~~~~~~NGla~SpDg~t 176 (307)
T COG3386 109 PL------NRPNDGVVDPDGR-IWFG--DMGYFDLGKSEERPTGSLYRVDP---DGGVVRLLDDDLTIPNGLAFSPDGKT 176 (307)
T ss_pred Cc------CCCCceeEcCCCC-EEEe--CCCccccCccccCCcceEEEEcC---CCCEEEeecCcEEecCceEECCCCCE
Confidence 11 2233567788885 3333 11100 00011122347888873 45555555554556688999999999
Q ss_pred EEEEEecccCceEEEEEcCC
Q 002209 470 LVYESWYKTRRTRTWVISPG 489 (953)
Q Consensus 470 l~~~~~~~~~~~~l~~~d~~ 489 (953)
++++.... .+||.++.+
T Consensus 177 ly~aDT~~---~~i~r~~~d 193 (307)
T COG3386 177 LYVADTPA---NRIHRYDLD 193 (307)
T ss_pred EEEEeCCC---CeEEEEecC
Confidence 88875433 378888776
No 297
>KOG0295 consensus WD40 repeat-containing protein [Function unknown]
Probab=97.98 E-value=0.00015 Score=74.57 Aligned_cols=100 Identities=12% Similarity=0.079 Sum_probs=67.4
Q ss_pred CCCceecCCCCEEEEEecCCCCCccccccccceeceEEecCCCCCCcceeeeeceEEEEccCCCCCCceeeeecC-CCCC
Q 002209 111 LPALSFSPQRDKILFLKRRALPPLEELARPEEKLAGLRIDGKCNTRSRMSFYTGIGIHQLFPDGKLGQEIEIQGF-PDGA 189 (953)
Q Consensus 111 ~~~~~~SPDG~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~i~~~~~~g~~~~~~~l~~~-~~~~ 189 (953)
+..++|+.-|+.||..+.+ -.+.+||... ..+.+..+ ....
T Consensus 153 v~di~~~a~Gk~l~tcSsD---------------------------------l~~~LWd~~~-----~~~c~ks~~gh~h 194 (406)
T KOG0295|consen 153 VFDISFDASGKYLATCSSD---------------------------------LSAKLWDFDT-----FFRCIKSLIGHEH 194 (406)
T ss_pred eeEEEEecCccEEEecCCc---------------------------------cchhheeHHH-----HHHHHHHhcCccc
Confidence 6667777788777777664 1256777721 12222212 1223
Q ss_pred cccceEeccCCCeEEEEEeeccccCCCCcceEEEEECCCCceeecccCCCccccccccceEEecCCeEEEEE
Q 002209 190 KLNFVTWSQDGKHLAFSIRIDAEDSSSSKLRVWVADVDTGKARPLFQSPDIYLNAIFDNFVWVNNSTLLVCT 261 (953)
Q Consensus 190 ~~~~~~wSPDG~~laf~~~~~~~~~~~~~~~l~~~d~~~g~~~~lt~~~~~~~~~~~~~~~wspDg~~l~~~ 261 (953)
.++.+.+-|-|.+|+-.++ +..|..++.++|........+... +..+.-.-||++++..
T Consensus 195 ~vS~V~f~P~gd~ilS~sr---------D~tik~We~~tg~cv~t~~~h~ew----vr~v~v~~DGti~As~ 253 (406)
T KOG0295|consen 195 GVSSVFFLPLGDHILSCSR---------DNTIKAWECDTGYCVKTFPGHSEW----VRMVRVNQDGTIIASC 253 (406)
T ss_pred ceeeEEEEecCCeeeeccc---------ccceeEEecccceeEEeccCchHh----EEEEEecCCeeEEEec
Confidence 7899999999999998664 557888898898776544433332 7788888999988855
No 298
>KOG0288 consensus WD40 repeat protein TipD [General function prediction only]
Probab=97.97 E-value=0.00022 Score=74.42 Aligned_cols=251 Identities=13% Similarity=0.074 Sum_probs=139.4
Q ss_pred cccceEeccCCCeEEEEEeeccccCCCCcceEEEEECCCCceeecccCCCccccccccceEEecCCeEEEEEecCCCCCC
Q 002209 190 KLNFVTWSQDGKHLAFSIRIDAEDSSSSKLRVWVADVDTGKARPLFQSPDIYLNAIFDNFVWVNNSTLLVCTIPLLRGDP 269 (953)
Q Consensus 190 ~~~~~~wSPDG~~laf~~~~~~~~~~~~~~~l~~~d~~~g~~~~lt~~~~~~~~~~~~~~~wspDg~~l~~~~~~~~~~~ 269 (953)
.+....|-++...|+... ....|-+|++.+++...+....+ .++.+....+.++++.+...+
T Consensus 177 ev~~v~~l~~sdtlatgg---------~Dr~Ik~W~v~~~k~~~~~tLaG--s~g~it~~d~d~~~~~~iAas------- 238 (459)
T KOG0288|consen 177 EVHDVEFLRNSDTLATGG---------SDRIIKLWNVLGEKSELISTLAG--SLGNITSIDFDSDNKHVIAAS------- 238 (459)
T ss_pred ccceeEEccCcchhhhcc---------hhhhhhhhhcccchhhhhhhhhc--cCCCcceeeecCCCceEEeec-------
Confidence 577889998877777632 23445555555554322211111 223377888999998777541
Q ss_pred CCCCCCCCCCceeecCCCccccchhhhhhcCCcchhhhhhhhccceEEEEEcCCceeEeCCC-CcccccccCCCCcEEEE
Q 002209 270 PKKPLVPLGPKMQSNEKRDIIQVRTFQDLLKDEYDEDLFDYYATTQLVLVSLDGTVKEIGPP-AVYTSLDPSPDEKYILI 348 (953)
Q Consensus 270 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~l~~~~~~g~~~~l~~~-~~~~~~~~SpDG~~l~~ 348 (953)
.| +...||.+|-......|+.. +.++...|.-....++-
T Consensus 239 ---------------------------------~d-------~~~r~Wnvd~~r~~~TLsGHtdkVt~ak~~~~~~~vVs 278 (459)
T KOG0288|consen 239 ---------------------------------ND-------KNLRLWNVDSLRLRHTLSGHTDKVTAAKFKLSHSRVVS 278 (459)
T ss_pred ---------------------------------CC-------Cceeeeeccchhhhhhhcccccceeeehhhccccceee
Confidence 11 22345544422234445555 67777778776665444
Q ss_pred EEecCCccccccCCCCCcceEEEeccCce-EEEeccCCCcccCCccccccccCccceeeccCCCCceEEEEeccCCCccc
Q 002209 349 SSIHRPYSFIVPCGRFPRQVGVWTTDGIF-VRELCDLPLAEDIPIAFNSVRKGMRSINWRSDKPSTLYWAETQDGGDAKV 427 (953)
Q Consensus 349 ~~~~~~~~~~~~~~~~~~~i~~~d~~g~~-~~~l~~~~~~~~~p~~~~~~~~~~~~~~wspDg~~i~~~~~~~~~~~~~~ 427 (953)
.+.+ ..|.+||+.... .+.+..... ...+.-++ ..++ .+
T Consensus 279 gs~D-------------RtiK~WDl~k~~C~kt~l~~S~--------------cnDI~~~~----~~~~----Sg----- 318 (459)
T KOG0288|consen 279 GSAD-------------RTIKLWDLQKAYCSKTVLPGSQ--------------CNDIVCSI----SDVI----SG----- 318 (459)
T ss_pred cccc-------------chhhhhhhhhhheecccccccc--------------ccceEecc----eeee----ec-----
Confidence 4433 388889987432 222111110 01122220 0111 00
Q ss_pred ccccCCeEEEEecCCCCCCCceEEeecccccCCeeeccCCceEEEEEecccCceEEEEEcCCCCCCCcEEeecCCCcccc
Q 002209 428 EVTPRDIIYTQQAEPVQGEGPEILHKLDLRYGGISWCDDSLALVYESWYKTRRTRTWVISPGSKDVAPRILFDRSSEDVY 507 (953)
Q Consensus 428 ~~~~~~~l~~~d~~~~~g~~~~~l~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~ 507 (953)
-....|..||. .+...+.-....+.+.++..|+||..|...+.++ .+-++|+.+. +.+..+....- ..
T Consensus 319 --H~DkkvRfwD~---Rs~~~~~sv~~gg~vtSl~ls~~g~~lLsssRDd----tl~viDlRt~--eI~~~~sA~g~-k~ 386 (459)
T KOG0288|consen 319 --HFDKKVRFWDI---RSADKTRSVPLGGRVTSLDLSMDGLELLSSSRDD----TLKVIDLRTK--EIRQTFSAEGF-KC 386 (459)
T ss_pred --ccccceEEEec---cCCceeeEeecCcceeeEeeccCCeEEeeecCCC----ceeeeecccc--cEEEEeecccc-cc
Confidence 11234777774 3344444444556788999999999988775444 4667777663 33333322211 01
Q ss_pred CCCCCCCeEeccCCCEEEEEeeeccCCCcEEEEecCCCCCCCCCCeEEEEECCCCceEEEeccCc
Q 002209 508 SDPGSPMMRRTSTGTYVIAKIKKENDEGTYILLNGNGATPEGNIPFLDLFDINTGSKERIWESDK 572 (953)
Q Consensus 508 ~~~~~p~~~~SpDG~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~d~~~~~~~~l~~~~~ 572 (953)
+. ..-.+.|||||++++..+.++ .+|+|++.+++.+.+.....
T Consensus 387 as-DwtrvvfSpd~~YvaAGS~dg---------------------sv~iW~v~tgKlE~~l~~s~ 429 (459)
T KOG0288|consen 387 AS-DWTRVVFSPDGSYVAAGSADG---------------------SVYIWSVFTGKLEKVLSLST 429 (459)
T ss_pred cc-ccceeEECCCCceeeeccCCC---------------------cEEEEEccCceEEEEeccCC
Confidence 11 111278999999999887533 39999999999988766554
No 299
>KOG2106 consensus Uncharacterized conserved protein, contains HELP and WD40 domains [Function unknown]
Probab=97.95 E-value=0.0043 Score=66.69 Aligned_cols=59 Identities=10% Similarity=0.211 Sum_probs=40.2
Q ss_pred CcccceEeccCCCeEEEEEeeccccCCCCcceEEEEECCCCceee---cccCCCccccccccceEEecCCeEEE
Q 002209 189 AKLNFVTWSQDGKHLAFSIRIDAEDSSSSKLRVWVADVDTGKARP---LFQSPDIYLNAIFDNFVWVNNSTLLV 259 (953)
Q Consensus 189 ~~~~~~~wSPDG~~laf~~~~~~~~~~~~~~~l~~~d~~~g~~~~---lt~~~~~~~~~~~~~~~wspDg~~l~ 259 (953)
+.+....|.|-+..|..+- +..+||.++++++...+ +....+. ..+-.+.|.+||..|-
T Consensus 201 e~v~~a~FHPtd~nliit~---------Gk~H~~Fw~~~~~~l~k~~~~fek~ek---k~Vl~v~F~engdviT 262 (626)
T KOG2106|consen 201 EVVFLATFHPTDPNLIITC---------GKGHLYFWTLRGGSLVKRQGIFEKREK---KFVLCVTFLENGDVIT 262 (626)
T ss_pred ceEEEEEeccCCCcEEEEe---------CCceEEEEEccCCceEEEeeccccccc---eEEEEEEEcCCCCEEe
Confidence 3577889999888877755 47799999999876432 3222221 2256778888887654
No 300
>PF03959 FSH1: Serine hydrolase (FSH1); InterPro: IPR005645 This entry represents proteins belonging to the AB hydrolase family. It consists of serine hydrolases of unknown specificity [, ] and includes uncharacterised proteins.; PDB: 1YCD_A.
Probab=97.93 E-value=7.7e-05 Score=75.80 Aligned_cols=92 Identities=24% Similarity=0.190 Sum_probs=58.1
Q ss_pred EEEEEeChHHHHHHHHHHhC--------CCcccEEEEcccCCCCCCCCcCcccccchhhhhHHHHHhcCcccccCCCCCc
Q 002209 761 IAVGGHSYGAFMTANLLAHA--------PHLFCCGIARSGAYNRTLTPFGFQNEDRTLWEATSTYVEMSPFMSANKLKKP 832 (953)
Q Consensus 761 i~l~G~S~GG~~a~~~a~~~--------p~~~~a~v~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~sp~~~~~~i~~P 832 (953)
.+|+|+|.||.+|+.++.+. ...||.+|+++|+...... +.......+|++|
T Consensus 104 dGvlGFSQGA~lAa~ll~~~~~~~~~~~~~~~kf~V~~sg~~p~~~~--------------------~~~~~~~~~i~iP 163 (212)
T PF03959_consen 104 DGVLGFSQGAALAALLLALQQRGRPDGAHPPFKFAVFISGFPPPDPD--------------------YQELYDEPKISIP 163 (212)
T ss_dssp SEEEEETHHHHHHHHHHHHHHHHST--T----SEEEEES----EEE---------------------GTTTT--TT---E
T ss_pred EEEEeecHHHHHHHHHHHHHHhhcccccCCCceEEEEEcccCCCchh--------------------hhhhhccccCCCC
Confidence 49999999999999888632 1348999999886321000 0011123457899
Q ss_pred EEEEEeCCCCCCCCchHHHHHHHHHHHhCCCcEEEEEeCCCCccCC
Q 002209 833 ILLVHGEEDNNSGTLTMQSDRFFNALKGHGALCRLVILPFESHGYA 878 (953)
Q Consensus 833 ~Li~~G~~D~~v~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~H~~~ 878 (953)
+|-++|.+|..++ .+.++++++..... .+++..++ ||.+.
T Consensus 164 tlHv~G~~D~~~~--~~~s~~L~~~~~~~---~~v~~h~g-GH~vP 203 (212)
T PF03959_consen 164 TLHVIGENDPVVP--PERSEALAEMFDPD---ARVIEHDG-GHHVP 203 (212)
T ss_dssp EEEEEETT-SSS---HHHHHHHHHHHHHH---EEEEEESS-SSS--
T ss_pred eEEEEeCCCCCcc--hHHHHHHHHhccCC---cEEEEECC-CCcCc
Confidence 9999999999998 88999999998874 57778887 89874
No 301
>KOG1523 consensus Actin-related protein Arp2/3 complex, subunit ARPC1/p41-ARC [Cytoskeleton]
Probab=97.92 E-value=0.00042 Score=70.22 Aligned_cols=105 Identities=10% Similarity=0.193 Sum_probs=64.3
Q ss_pred CCCCceecCCCCEEEEEecCCCCCccccccccceeceEEecCCCCCCcceeeeeceEEEEccCCCCCCceeeeecCC-CC
Q 002209 110 PLPALSFSPQRDKILFLKRRALPPLEELARPEEKLAGLRIDGKCNTRSRMSFYTGIGIHQLFPDGKLGQEIEIQGFP-DG 188 (953)
Q Consensus 110 ~~~~~~~SPDG~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~i~~~~~~g~~~~~~~l~~~~-~~ 188 (953)
++..-+|++|++.+|..... +++.|+.... .. .-..+..+. +.
T Consensus 12 pitchAwn~drt~iAv~~~~---------------------------------~evhiy~~~~-~~--~w~~~htls~Hd 55 (361)
T KOG1523|consen 12 PITCHAWNSDRTQIAVSPNN---------------------------------HEVHIYSMLG-AD--LWEPAHTLSEHD 55 (361)
T ss_pred ceeeeeecCCCceEEeccCC---------------------------------ceEEEEEecC-CC--CceeceehhhhC
Confidence 45667899999999987763 2556665522 11 012222122 23
Q ss_pred CcccceEeccCCCeEEEEEeeccccCCCCcceEEEEEC-CCCceeecccCCCccccccccceEEecCCeEEEEE
Q 002209 189 AKLNFVTWSQDGKHLAFSIRIDAEDSSSSKLRVWVADV-DTGKARPLFQSPDIYLNAIFDNFVWVNNSTLLVCT 261 (953)
Q Consensus 189 ~~~~~~~wSPDG~~laf~~~~~~~~~~~~~~~l~~~d~-~~g~~~~lt~~~~~~~~~~~~~~~wspDg~~l~~~ 261 (953)
..++.+.|+|.+.+|..... ..+-|++.. ++|+-.+..- -.++|.....+.|+|.+..+++.
T Consensus 56 ~~vtgvdWap~snrIvtcs~---------drnayVw~~~~~~~Wkptlv--LlRiNrAAt~V~WsP~enkFAVg 118 (361)
T KOG1523|consen 56 KIVTGVDWAPKSNRIVTCSH---------DRNAYVWTQPSGGTWKPTLV--LLRINRAATCVKWSPKENKFAVG 118 (361)
T ss_pred cceeEEeecCCCCceeEccC---------CCCccccccCCCCeecccee--EEEeccceeeEeecCcCceEEec
Confidence 37788999999999998663 334455555 5555332211 11244446789999999998876
No 302
>KOG1524 consensus WD40 repeat-containing protein CHE-2 [General function prediction only]
Probab=97.92 E-value=7.9e-05 Score=79.94 Aligned_cols=167 Identities=16% Similarity=0.207 Sum_probs=101.0
Q ss_pred CcccceEeccCCCeEEEEEeeccccCCCCcceEEEEECCCCceeecccCCCccccccccceEEecCCeEEEEEecCCCCC
Q 002209 189 AKLNFVTWSQDGKHLAFSIRIDAEDSSSSKLRVWVADVDTGKARPLFQSPDIYLNAIFDNFVWVNNSTLLVCTIPLLRGD 268 (953)
Q Consensus 189 ~~~~~~~wSPDG~~laf~~~~~~~~~~~~~~~l~~~d~~~g~~~~lt~~~~~~~~~~~~~~~wspDg~~l~~~~~~~~~~ 268 (953)
+.+..-+|+|||.-|+... ++..|-+|.-.|.-.-.+...... +..++|.|+...++|.
T Consensus 105 ~A~~~gRW~~dGtgLlt~G---------EDG~iKiWSrsGMLRStl~Q~~~~-----v~c~~W~p~S~~vl~c------- 163 (737)
T KOG1524|consen 105 AAISSGRWSPDGAGLLTAG---------EDGVIKIWSRSGMLRSTVVQNEES-----IRCARWAPNSNSIVFC------- 163 (737)
T ss_pred hhhhhcccCCCCceeeeec---------CCceEEEEeccchHHHHHhhcCce-----eEEEEECCCCCceEEe-------
Confidence 4677889999999998854 344555666444322233333332 7789999999988887
Q ss_pred CCCCCCCCCCCceeecCCCccccchhhhhhcCCcchhhhhhhhccceEEEEEc--CCce-eEeCCCCcccccccCCCCcE
Q 002209 269 PPKKPLVPLGPKMQSNEKRDIIQVRTFQDLLKDEYDEDLFDYYATTQLVLVSL--DGTV-KEIGPPAVYTSLDPSPDEKY 345 (953)
Q Consensus 269 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~l~~~~~--~g~~-~~l~~~~~~~~~~~SpDG~~ 345 (953)
..+++++-.+ +-++ +.-...+-+-...|+|....
T Consensus 164 -------------------------------------------~g~h~~IKpL~~n~k~i~WkAHDGiiL~~~W~~~s~l 200 (737)
T KOG1524|consen 164 -------------------------------------------QGGHISIKPLAANSKIIRWRAHDGLVLSLSWSTQSNI 200 (737)
T ss_pred -------------------------------------------cCCeEEEeecccccceeEEeccCcEEEEeecCccccc
Confidence 3356666666 3232 22233366778899999987
Q ss_pred EEEEEecCCccccccCCCCCcceEEEeccCceEEEeccCCCcccCCccccccccCccceeeccCCCCceEEEEeccCCCc
Q 002209 346 ILISSIHRPYSFIVPCGRFPRQVGVWTTDGIFVRELCDLPLAEDIPIAFNSVRKGMRSINWRSDKPSTLYWAETQDGGDA 425 (953)
Q Consensus 346 l~~~~~~~~~~~~~~~~~~~~~i~~~d~~g~~~~~l~~~~~~~~~p~~~~~~~~~~~~~~wspDg~~i~~~~~~~~~~~~ 425 (953)
|+....+ ....+||.-|...- +.. .++.| +.+++|.|| +-.+.|
T Consensus 201 I~sgGED-------------~kfKvWD~~G~~Lf---~S~-~~ey~---------ITSva~npd-~~~~v~--------- 244 (737)
T KOG1524|consen 201 IASGGED-------------FRFKIWDAQGANLF---TSA-AEEYA---------ITSVAFNPE-KDYLLW--------- 244 (737)
T ss_pred eeecCCc-------------eeEEeecccCcccc---cCC-hhccc---------eeeeeeccc-cceeee---------
Confidence 7755432 25667887764322 211 11222 368999999 433333
Q ss_pred ccccccCCeEEEEecCCCCCCCceEEeec-ccccCCeeeccCCceEEEEE
Q 002209 426 KVEVTPRDIIYTQQAEPVQGEGPEILHKL-DLRYGGISWCDDSLALVYES 474 (953)
Q Consensus 426 ~~~~~~~~~l~~~d~~~~~g~~~~~l~~~-~~~~~~~~~SpDg~~l~~~~ 474 (953)
.++. -++.+. .+.+..++||+||..++...
T Consensus 245 -----------S~nt--------~R~~~p~~GSifnlsWS~DGTQ~a~gt 275 (737)
T KOG1524|consen 245 -----------SYNT--------ARFSSPRVGSIFNLSWSADGTQATCGT 275 (737)
T ss_pred -----------eeee--------eeecCCCccceEEEEEcCCCceeeccc
Confidence 1110 112222 34566789999999988764
No 303
>PF12146 Hydrolase_4: Putative lysophospholipase; InterPro: IPR022742 This domain is found in bacteria and eukaryotes and is approximately 110 amino acids in length. Many members are annotated as being lysophospholipases, and others as alpha-beta hydrolase fold-containing proteins.
Probab=97.90 E-value=2.8e-05 Score=64.32 Aligned_cols=75 Identities=15% Similarity=0.151 Sum_probs=55.6
Q ss_pred CcEEEEEEEcCCCCCCCCCCCccEEEEeCCCCCcCcCCCCcccCCCCCCCCccchHHHHHHHcCcEEEEcCCCCCCCCCC
Q 002209 649 GVQLSATLYLPPGYDPSKDGPLPCLFWSYPGEFKSKDAAGQVRGSPNEFPRIGSTSVLLWLARGFAILGGPTTPIIGEGD 728 (953)
Q Consensus 649 g~~~~~~l~~P~~~~~~~~~~~P~vv~~hGg~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~G~~V~~~~~~~~~G~G~ 728 (953)
|.+|.+..|.|+. . +..+|+++||-. .........+..|+++||.|++ +|.+|+|.
T Consensus 1 G~~L~~~~w~p~~-----~-~k~~v~i~HG~~---------------eh~~ry~~~a~~L~~~G~~V~~---~D~rGhG~ 56 (79)
T PF12146_consen 1 GTKLFYRRWKPEN-----P-PKAVVVIVHGFG---------------EHSGRYAHLAEFLAEQGYAVFA---YDHRGHGR 56 (79)
T ss_pred CcEEEEEEecCCC-----C-CCEEEEEeCCcH---------------HHHHHHHHHHHHHHhCCCEEEE---ECCCcCCC
Confidence 6789999999975 2 478999999941 2333345677889999999999 67789999
Q ss_pred hhhhh---hhHHHHHHHHHHHH
Q 002209 729 EEAND---RFVEQLVACAEAAV 747 (953)
Q Consensus 729 ~~~~~---~~~~~~~~D~~~~~ 747 (953)
|.+.. ..++..++|+...+
T Consensus 57 S~g~rg~~~~~~~~v~D~~~~~ 78 (79)
T PF12146_consen 57 SEGKRGHIDSFDDYVDDLHQFI 78 (79)
T ss_pred CCCcccccCCHHHHHHHHHHHh
Confidence 86532 34677788877665
No 304
>PF04762 IKI3: IKI3 family; InterPro: IPR006849 Members of this family are components of the elongator multi-subunit component of a novel RNA polymerase II holoenzyme for transcriptional elongation [].
Probab=97.90 E-value=0.017 Score=71.29 Aligned_cols=118 Identities=14% Similarity=0.177 Sum_probs=69.7
Q ss_pred cccccccCCCCcEEEEEEecCCccccccCCCCCcceEEEeccCceEEEeccCCCcccCCccccccccCccceeeccCCCC
Q 002209 333 VYTSLDPSPDEKYILISSIHRPYSFIVPCGRFPRQVGVWTTDGIFVRELCDLPLAEDIPIAFNSVRKGMRSINWRSDKPS 412 (953)
Q Consensus 333 ~~~~~~~SpDG~~l~~~~~~~~~~~~~~~~~~~~~i~~~d~~g~~~~~l~~~~~~~~~p~~~~~~~~~~~~~~wspDg~~ 412 (953)
.-..++|-.||+++|+++..... .....+.+|+-+|. ...... +.. +-...++|.|.|..
T Consensus 211 ~~~~ISWRGDG~yFAVss~~~~~-------~~~R~iRVy~ReG~-L~stSE-~v~-----------gLe~~l~WrPsG~l 270 (928)
T PF04762_consen 211 GRVRISWRGDGEYFAVSSVEPET-------GSRRVIRVYSREGE-LQSTSE-PVD-----------GLEGALSWRPSGNL 270 (928)
T ss_pred CceEEEECCCCcEEEEEEEEcCC-------CceeEEEEECCCce-EEeccc-cCC-----------CccCCccCCCCCCE
Confidence 44568899999999999853211 12347888988853 221111 110 11135899999997
Q ss_pred ceEEEEeccCCCcccccccCCeEEEEecCCCCCCCceEEe----ecccccCCeeeccCCceEEEEEecccCceEEEEE
Q 002209 413 TLYWAETQDGGDAKVEVTPRDIIYTQQAEPVQGEGPEILH----KLDLRYGGISWCDDSLALVYESWYKTRRTRTWVI 486 (953)
Q Consensus 413 i~~~~~~~~~~~~~~~~~~~~~l~~~d~~~~~g~~~~~l~----~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~l~~~ 486 (953)
|+-.-. . ..+..|..+.- +|-+...++ ..+..+..+.|++|+..|+....+. .+||..
T Consensus 271 IA~~q~-~---------~~~~~VvFfEr---NGLrhgeF~l~~~~~~~~v~~l~Wn~ds~iLAv~~~~~---vqLWt~ 332 (928)
T PF04762_consen 271 IASSQR-L---------PDRHDVVFFER---NGLRHGEFTLRFDPEEEKVIELAWNSDSEILAVWLEDR---VQLWTR 332 (928)
T ss_pred EEEEEE-c---------CCCcEEEEEec---CCcEeeeEecCCCCCCceeeEEEECCCCCEEEEEecCC---ceEEEe
Confidence 776621 1 22345666663 443333322 2345567899999999988755322 356654
No 305
>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]
Probab=97.88 E-value=0.00051 Score=75.72 Aligned_cols=58 Identities=17% Similarity=0.333 Sum_probs=44.1
Q ss_pred CCCCCceecCCCCEEEEEecCCCCCccccccccceeceEEecCCCCCCcceeeeeceEEEEccCCCCCCceeeeecCCCC
Q 002209 109 PPLPALSFSPQRDKILFLKRRALPPLEELARPEEKLAGLRIDGKCNTRSRMSFYTGIGIHQLFPDGKLGQEIEIQGFPDG 188 (953)
Q Consensus 109 ~~~~~~~~SPDG~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~i~~~~~~g~~~~~~~l~~~~~~ 188 (953)
.-+..++|-|||..|+....+ .++|+|.+ +| +.-..|.++.
T Consensus 13 hci~d~afkPDGsqL~lAAg~----------------------------------rlliyD~n-dG--~llqtLKgHK-- 53 (1081)
T KOG1538|consen 13 HCINDIAFKPDGTQLILAAGS----------------------------------RLLVYDTS-DG--TLLQPLKGHK-- 53 (1081)
T ss_pred cchheeEECCCCceEEEecCC----------------------------------EEEEEeCC-Cc--cccccccccc--
Confidence 357789999999999988774 67999985 45 3334455443
Q ss_pred CcccceEeccCCCeEEE
Q 002209 189 AKLNFVTWSQDGKHLAF 205 (953)
Q Consensus 189 ~~~~~~~wSPDG~~laf 205 (953)
..+..++||-||++.|.
T Consensus 54 DtVycVAys~dGkrFAS 70 (1081)
T KOG1538|consen 54 DTVYCVAYAKDGKRFAS 70 (1081)
T ss_pred ceEEEEEEccCCceecc
Confidence 36889999999998775
No 306
>COG3386 Gluconolactonase [Carbohydrate transport and metabolism]
Probab=97.86 E-value=0.0076 Score=64.24 Aligned_cols=205 Identities=18% Similarity=0.153 Sum_probs=108.9
Q ss_pred ccceEeccCCCeEEEEEeeccccCCCCcceEEEEECCCCceeecccCCCccccccccceEEecCCeEEEEEecCCCCCCC
Q 002209 191 LNFVTWSQDGKHLAFSIRIDAEDSSSSKLRVWVADVDTGKARPLFQSPDIYLNAIFDNFVWVNNSTLLVCTIPLLRGDPP 270 (953)
Q Consensus 191 ~~~~~wSPDG~~laf~~~~~~~~~~~~~~~l~~~d~~~g~~~~lt~~~~~~~~~~~~~~~wspDg~~l~~~~~~~~~~~~ 270 (953)
...|.|.|+++.|+|+-- ....|+.+++++|+.+.... +.. +.....-.++..|+...
T Consensus 27 gEgP~w~~~~~~L~w~DI--------~~~~i~r~~~~~g~~~~~~~-p~~-----~~~~~~~d~~g~Lv~~~-------- 84 (307)
T COG3386 27 GEGPVWDPDRGALLWVDI--------LGGRIHRLDPETGKKRVFPS-PGG-----FSSGALIDAGGRLIACE-------- 84 (307)
T ss_pred ccCccCcCCCCEEEEEeC--------CCCeEEEecCCcCceEEEEC-CCC-----cccceeecCCCeEEEEc--------
Confidence 345899999999988532 36799999998776654433 332 33444444444444330
Q ss_pred CCCCCCCCCceeecCCCccccchhhhhhcCCcchhhhhhhhccceEEEEEc-CCce-eEeCCC------CcccccccCCC
Q 002209 271 KKPLVPLGPKMQSNEKRDIIQVRTFQDLLKDEYDEDLFDYYATTQLVLVSL-DGTV-KEIGPP------AVYTSLDPSPD 342 (953)
Q Consensus 271 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~l~~~~~-~g~~-~~l~~~------~~~~~~~~SpD 342 (953)
..+++++. +|.. +.+... .........||
T Consensus 85 -------------------------------------------~g~~~~~~~~~~~~t~~~~~~~~~~~~r~ND~~v~pd 121 (307)
T COG3386 85 -------------------------------------------HGVRLLDPDTGGKITLLAEPEDGLPLNRPNDGVVDPD 121 (307)
T ss_pred -------------------------------------------cccEEEeccCCceeEEeccccCCCCcCCCCceeEcCC
Confidence 12334443 3333 333321 23345678899
Q ss_pred CcEEEEEEecCCccccccCCCCCcceEEEeccCceEEEeccCCCcccCCccccccccCccceeeccCCCCceEEEEeccC
Q 002209 343 EKYILISSIHRPYSFIVPCGRFPRQVGVWTTDGIFVRELCDLPLAEDIPIAFNSVRKGMRSINWRSDKPSTLYWAETQDG 422 (953)
Q Consensus 343 G~~l~~~~~~~~~~~~~~~~~~~~~i~~~d~~g~~~~~l~~~~~~~~~p~~~~~~~~~~~~~~wspDg~~i~~~~~~~~~ 422 (953)
|+ +.|..... .+......+..+.+|.++.+++..+.+...- ....+++|||||+.+++. +
T Consensus 122 G~-~wfgt~~~-~~~~~~~~~~~G~lyr~~p~g~~~~l~~~~~-------------~~~NGla~SpDg~tly~a-D---- 181 (307)
T COG3386 122 GR-IWFGDMGY-FDLGKSEERPTGSLYRVDPDGGVVRLLDDDL-------------TIPNGLAFSPDGKTLYVA-D---- 181 (307)
T ss_pred CC-EEEeCCCc-cccCccccCCcceEEEEcCCCCEEEeecCcE-------------EecCceEECCCCCEEEEE-e----
Confidence 87 44554331 0000011122347888887777777666521 122479999999966655 2
Q ss_pred CCcccccccCCeEEEEecCCCCC---CCceEE--eecccccCCeeeccCCceEEEEEecccCceEEEEEcCCC
Q 002209 423 GDAKVEVTPRDIIYTQQAEPVQG---EGPEIL--HKLDLRYGGISWCDDSLALVYESWYKTRRTRTWVISPGS 490 (953)
Q Consensus 423 ~~~~~~~~~~~~l~~~d~~~~~g---~~~~~l--~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~l~~~d~~~ 490 (953)
+....++.+++++.++ +....+ ....+...++....||..-+...+.. ..|-++++++
T Consensus 182 -------T~~~~i~r~~~d~~~g~~~~~~~~~~~~~~~G~PDG~~vDadG~lw~~a~~~g---~~v~~~~pdG 244 (307)
T COG3386 182 -------TPANRIHRYDLDPATGPIGGRRGFVDFDEEPGLPDGMAVDADGNLWVAAVWGG---GRVVRFNPDG 244 (307)
T ss_pred -------CCCCeEEEEecCcccCccCCcceEEEccCCCCCCCceEEeCCCCEEEecccCC---ceEEEECCCC
Confidence 3356788888633222 111111 12234445556666666432222221 2677777774
No 307
>KOG0278 consensus Serine/threonine kinase receptor-associated protein [Lipid transport and metabolism]
Probab=97.86 E-value=0.00029 Score=68.63 Aligned_cols=178 Identities=13% Similarity=0.119 Sum_probs=110.2
Q ss_pred CCCCceecCCCCEEEEEecCCCCCccccccccceeceEEecCCCCCCcceeeeeceEEEEccCCCCCCceeeeecCCCCC
Q 002209 110 PLPALSFSPQRDKILFLKRRALPPLEELARPEEKLAGLRIDGKCNTRSRMSFYTGIGIHQLFPDGKLGQEIEIQGFPDGA 189 (953)
Q Consensus 110 ~~~~~~~SPDG~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~i~~~~~~g~~~~~~~l~~~~~~~ 189 (953)
-+..++||-|.++|+..... .-|+|+|++.. ..+++.+.+.+ .
T Consensus 102 ivk~~af~~ds~~lltgg~e---------------------------------kllrvfdln~p--~App~E~~ght--g 144 (334)
T KOG0278|consen 102 IVKAVAFSQDSNYLLTGGQE---------------------------------KLLRVFDLNRP--KAPPKEISGHT--G 144 (334)
T ss_pred eeeeEEecccchhhhccchH---------------------------------HHhhhhhccCC--CCCchhhcCCC--C
Confidence 46678888888888766553 12456666321 13456666655 3
Q ss_pred cccceEeccCCCeEEEEEeeccccCCCCcceEEEEECCCCceeecccCCCccccccccceEEecCCeEEEEEecCCCCCC
Q 002209 190 KLNFVTWSQDGKHLAFSIRIDAEDSSSSKLRVWVADVDTGKARPLFQSPDIYLNAIFDNFVWVNNSTLLVCTIPLLRGDP 269 (953)
Q Consensus 190 ~~~~~~wSPDG~~laf~~~~~~~~~~~~~~~l~~~d~~~g~~~~lt~~~~~~~~~~~~~~~wspDg~~l~~~~~~~~~~~ 269 (953)
.+..+.|--..+.|+-.. ....+.+||..+|+..+-...+.. +.++..++||++|..+
T Consensus 145 ~Ir~v~wc~eD~~iLSSa---------dd~tVRLWD~rTgt~v~sL~~~s~-----VtSlEvs~dG~ilTia-------- 202 (334)
T KOG0278|consen 145 GIRTVLWCHEDKCILSSA---------DDKTVRLWDHRTGTEVQSLEFNSP-----VTSLEVSQDGRILTIA-------- 202 (334)
T ss_pred cceeEEEeccCceEEeec---------cCCceEEEEeccCcEEEEEecCCC-----CcceeeccCCCEEEEe--------
Confidence 588899988788888753 245667777778876554333332 7799999999988866
Q ss_pred CCCCCCCCCCceeecCCCccccchhhhhhcCCcchhhhhhhhccceEEEEEc--CCceeEeCCCCcccccccCCCCcEEE
Q 002209 270 PKKPLVPLGPKMQSNEKRDIIQVRTFQDLLKDEYDEDLFDYYATTQLVLVSL--DGTVKEIGPPAVYTSLDPSPDEKYIL 347 (953)
Q Consensus 270 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~l~~~~~--~g~~~~l~~~~~~~~~~~SpDG~~l~ 347 (953)
..+.+-.+|. =+.++..-.+..+.+.+++|+-..++
T Consensus 203 ------------------------------------------~gssV~Fwdaksf~~lKs~k~P~nV~SASL~P~k~~fV 240 (334)
T KOG0278|consen 203 ------------------------------------------YGSSVKFWDAKSFGLLKSYKMPCNVESASLHPKKEFFV 240 (334)
T ss_pred ------------------------------------------cCceeEEeccccccceeeccCccccccccccCCCceEE
Confidence 1122333343 23444444446788899999885444
Q ss_pred EEEecCCccccccCCCCCcceEEEeccCceEEEeccCCCcccCCccccccccCccceeeccCCCC
Q 002209 348 ISSIHRPYSFIVPCGRFPRQVGVWTTDGIFVRELCDLPLAEDIPIAFNSVRKGMRSINWRSDKPS 412 (953)
Q Consensus 348 ~~~~~~~~~~~~~~~~~~~~i~~~d~~g~~~~~l~~~~~~~~~p~~~~~~~~~~~~~~wspDg~~ 412 (953)
.... ...++.+|-++++....... +..+-+-.+.|||||..
T Consensus 241 aGge-------------d~~~~kfDy~TgeEi~~~nk-----------gh~gpVhcVrFSPdGE~ 281 (334)
T KOG0278|consen 241 AGGE-------------DFKVYKFDYNTGEEIGSYNK-----------GHFGPVHCVRFSPDGEL 281 (334)
T ss_pred ecCc-------------ceEEEEEeccCCceeeeccc-----------CCCCceEEEEECCCCce
Confidence 3321 23677788887665544211 11122356899999973
No 308
>KOG0289 consensus mRNA splicing factor [General function prediction only]
Probab=97.83 E-value=0.0013 Score=69.20 Aligned_cols=228 Identities=10% Similarity=0.066 Sum_probs=128.2
Q ss_pred eeceEEecCCCCCCcceeeeeceEEEEccCCCCCCceeeeecCCCCCcccceEeccCCCeEEEEEeeccccCCCCcceEE
Q 002209 143 KLAGLRIDGKCNTRSRMSFYTGIGIHQLFPDGKLGQEIEIQGFPDGAKLNFVTWSQDGKHLAFSIRIDAEDSSSSKLRVW 222 (953)
Q Consensus 143 ~~~~~~~~~~~~~~~~~~~~~~i~i~~~~~~g~~~~~~~l~~~~~~~~~~~~~wSPDG~~laf~~~~~~~~~~~~~~~l~ 222 (953)
+...+.+.++.......+.+..|+||.+.... ....+ .+....+....-.|.|++|+..++ ....-
T Consensus 263 ki~~v~~~~~~~~v~~aSad~~i~vws~~~~s---~~~~~--~~h~~~V~~ls~h~tgeYllsAs~---------d~~w~ 328 (506)
T KOG0289|consen 263 KITSVKFHKDLDTVITASADEIIRVWSVPLSS---EPTSS--RPHEEPVTGLSLHPTGEYLLSASN---------DGTWA 328 (506)
T ss_pred EEEEEEeccchhheeecCCcceEEeecccccc---Ccccc--ccccccceeeeeccCCcEEEEecC---------CceEE
Confidence 34445555554444444444578999885421 11111 233456788888889998888653 22333
Q ss_pred EEECCCCceeecccCCCccccccccceEEecCCeEEEEEecCCCCCCCCCCCCCCCCceeecCCCccccchhhhhhcCCc
Q 002209 223 VADVDTGKARPLFQSPDIYLNAIFDNFVWVNNSTLLVCTIPLLRGDPPKKPLVPLGPKMQSNEKRDIIQVRTFQDLLKDE 302 (953)
Q Consensus 223 ~~d~~~g~~~~lt~~~~~~~~~~~~~~~wspDg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 302 (953)
..|..+|........+... -.+.+.++.|||-++...+
T Consensus 329 Fsd~~~g~~lt~vs~~~s~--v~~ts~~fHpDgLifgtgt---------------------------------------- 366 (506)
T KOG0289|consen 329 FSDISSGSQLTVVSDETSD--VEYTSAAFHPDGLIFGTGT---------------------------------------- 366 (506)
T ss_pred EEEccCCcEEEEEeecccc--ceeEEeeEcCCceEEeccC----------------------------------------
Confidence 3444455432222211110 0145888999997665331
Q ss_pred chhhhhhhhccceEEEEEc-CC-ceeEeCCC-CcccccccCCCCcEEEEEEecCCccccccCCCCCcceEEEeccCce-E
Q 002209 303 YDEDLFDYYATTQLVLVSL-DG-TVKEIGPP-AVYTSLDPSPDEKYILISSIHRPYSFIVPCGRFPRQVGVWTTDGIF-V 378 (953)
Q Consensus 303 ~d~~~~~~~~~~~l~~~~~-~g-~~~~l~~~-~~~~~~~~SpDG~~l~~~~~~~~~~~~~~~~~~~~~i~~~d~~g~~-~ 378 (953)
..+.|-++|+ ++ ...++... +.+..++||-+|-|||...++. .|.+||+..-. .
T Consensus 367 ---------~d~~vkiwdlks~~~~a~Fpght~~vk~i~FsENGY~Lat~add~-------------~V~lwDLRKl~n~ 424 (506)
T KOG0289|consen 367 ---------PDGVVKIWDLKSQTNVAKFPGHTGPVKAISFSENGYWLATAADDG-------------SVKLWDLRKLKNF 424 (506)
T ss_pred ---------CCceEEEEEcCCccccccCCCCCCceeEEEeccCceEEEEEecCC-------------eEEEEEehhhccc
Confidence 2245667777 54 44555555 8889999999999999998554 69999997422 2
Q ss_pred EEeccCCCcccCCccccccccCccceeeccCCCCceEEEEeccCCCcccccccCCeEEEEecCCCCCCCceE---Eeecc
Q 002209 379 RELCDLPLAEDIPIAFNSVRKGMRSINWRSDKPSTLYWAETQDGGDAKVEVTPRDIIYTQQAEPVQGEGPEI---LHKLD 455 (953)
Q Consensus 379 ~~l~~~~~~~~~p~~~~~~~~~~~~~~wspDg~~i~~~~~~~~~~~~~~~~~~~~~l~~~d~~~~~g~~~~~---l~~~~ 455 (953)
+.+.. .+. .++.++.|.+-|+.++.. +..-.||.++- ...+-+. +....
T Consensus 425 kt~~l---~~~---------~~v~s~~fD~SGt~L~~~-------------g~~l~Vy~~~k---~~k~W~~~~~~~~~s 476 (506)
T KOG0289|consen 425 KTIQL---DEK---------KEVNSLSFDQSGTYLGIA-------------GSDLQVYICKK---KTKSWTEIKELADHS 476 (506)
T ss_pred ceeec---ccc---------ccceeEEEcCCCCeEEee-------------cceeEEEEEec---ccccceeeehhhhcc
Confidence 22222 111 134567888888876655 22335666651 2222222 22233
Q ss_pred cccCCeeeccCCceEEEEEec
Q 002209 456 LRYGGISWCDDSLALVYESWY 476 (953)
Q Consensus 456 ~~~~~~~~SpDg~~l~~~~~~ 476 (953)
+....+.|...-++++..+.+
T Consensus 477 g~st~v~Fg~~aq~l~s~smd 497 (506)
T KOG0289|consen 477 GLSTGVRFGEHAQYLASTSMD 497 (506)
T ss_pred cccceeeecccceEEeeccch
Confidence 444567777777776665544
No 309
>KOG1332 consensus Vesicle coat complex COPII, subunit SEC13 [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.83 E-value=0.0011 Score=64.76 Aligned_cols=231 Identities=14% Similarity=0.190 Sum_probs=121.1
Q ss_pred ceEEEEccCCCCCCceeeeecCCCC-CcccceEecc--CCCeEEEEEeeccccCCCCcceEEEEECCCCceeecccCCCc
Q 002209 164 GIGIHQLFPDGKLGQEIEIQGFPDG-AKLNFVTWSQ--DGKHLAFSIRIDAEDSSSSKLRVWVADVDTGKARPLFQSPDI 240 (953)
Q Consensus 164 ~i~i~~~~~~g~~~~~~~l~~~~~~-~~~~~~~wSP--DG~~laf~~~~~~~~~~~~~~~l~~~d~~~g~~~~lt~~~~~ 240 (953)
.|.|..+...+ +...+..|+.. +.+-.+.|.- -|..||-.+ ....+.++.-++|.-.++.....
T Consensus 34 tVkIf~v~~n~---~s~ll~~L~Gh~GPVwqv~wahPk~G~iLAScs---------YDgkVIiWke~~g~w~k~~e~~~- 100 (299)
T KOG1332|consen 34 TVKIFEVRNNG---QSKLLAELTGHSGPVWKVAWAHPKFGTILASCS---------YDGKVIIWKEENGRWTKAYEHAA- 100 (299)
T ss_pred cEEEEEEcCCC---CceeeeEecCCCCCeeEEeecccccCcEeeEee---------cCceEEEEecCCCchhhhhhhhh-
Confidence 45677775433 22333333322 3667777764 688888765 35566677766775444433222
Q ss_pred cccccccceEEecCCe--EEEEEecCCCCCCCCCCCCCCCCceeecCCCccccchhhhhhcCCcchhhhhhhhccceEEE
Q 002209 241 YLNAIFDNFVWVNNST--LLVCTIPLLRGDPPKKPLVPLGPKMQSNEKRDIIQVRTFQDLLKDEYDEDLFDYYATTQLVL 318 (953)
Q Consensus 241 ~~~~~~~~~~wspDg~--~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~l~~ 318 (953)
+.+.+.+++|.|.+- .|++.+. | +.-.|..
T Consensus 101 -h~~SVNsV~wapheygl~LacasS----------------------------------------D-------G~vsvl~ 132 (299)
T KOG1332|consen 101 -HSASVNSVAWAPHEYGLLLACASS----------------------------------------D-------GKVSVLT 132 (299)
T ss_pred -hcccceeecccccccceEEEEeeC----------------------------------------C-------CcEEEEE
Confidence 233477899998864 4444411 1 2223334
Q ss_pred EEcC-C-ceeEeCCC--CcccccccCCC---C-----------cEEEEEEecCCccccccCCCCCcceEEEeccCceEEE
Q 002209 319 VSLD-G-TVKEIGPP--AVYTSLDPSPD---E-----------KYILISSIHRPYSFIVPCGRFPRQVGVWTTDGIFVRE 380 (953)
Q Consensus 319 ~~~~-g-~~~~l~~~--~~~~~~~~SpD---G-----------~~l~~~~~~~~~~~~~~~~~~~~~i~~~d~~g~~~~~ 380 (953)
++-+ | ....+..- -++.+++|.|- | ++++... -.+.+.+|+.+.+..+.
T Consensus 133 ~~~~g~w~t~ki~~aH~~GvnsVswapa~~~g~~~~~~~~~~~krlvSgG-------------cDn~VkiW~~~~~~w~~ 199 (299)
T KOG1332|consen 133 YDSSGGWTTSKIVFAHEIGVNSVSWAPASAPGSLVDQGPAAKVKRLVSGG-------------CDNLVKIWKFDSDSWKL 199 (299)
T ss_pred EcCCCCccchhhhhccccccceeeecCcCCCccccccCcccccceeeccC-------------CccceeeeecCCcchhh
Confidence 4443 3 22333222 57788899886 5 3333222 23367788777532111
Q ss_pred eccCCCcccCCccccccccCccceeeccCCCCceEEEEeccCCCcccccccCCeEEEEecCCCCCCC--ceEEeeccccc
Q 002209 381 LCDLPLAEDIPIAFNSVRKGMRSINWRSDKPSTLYWAETQDGGDAKVEVTPRDIIYTQQAEPVQGEG--PEILHKLDLRY 458 (953)
Q Consensus 381 l~~~~~~~~~p~~~~~~~~~~~~~~wspDg~~i~~~~~~~~~~~~~~~~~~~~~l~~~d~~~~~g~~--~~~l~~~~~~~ 458 (953)
-.. +.++..-+|.++|.|.-..-.+.+ ...+..+.+++|..+ .++++ .+.|...+..+
T Consensus 200 e~~----------l~~H~dwVRDVAwaP~~gl~~s~i---------AS~SqDg~viIwt~~-~e~e~wk~tll~~f~~~~ 259 (299)
T KOG1332|consen 200 ERT----------LEGHKDWVRDVAWAPSVGLPKSTI---------ASCSQDGTVIIWTKD-EEYEPWKKTLLEEFPDVV 259 (299)
T ss_pred hhh----------hhhcchhhhhhhhccccCCCceee---------EEecCCCcEEEEEec-CccCcccccccccCCcce
Confidence 111 112335678999999753222211 111334455555431 12221 23344444456
Q ss_pred CCeeeccCCceEEEEEecccCceEEEEEcCCC
Q 002209 459 GGISWCDDSLALVYESWYKTRRTRTWVISPGS 490 (953)
Q Consensus 459 ~~~~~SpDg~~l~~~~~~~~~~~~l~~~d~~~ 490 (953)
..++||.-|..|+.+..++ +..||.=+.++
T Consensus 260 w~vSWS~sGn~LaVs~GdN--kvtlwke~~~G 289 (299)
T KOG1332|consen 260 WRVSWSLSGNILAVSGGDN--KVTLWKENVDG 289 (299)
T ss_pred EEEEEeccccEEEEecCCc--EEEEEEeCCCC
Confidence 6799999999988875443 23677666554
No 310
>PF10142 PhoPQ_related: PhoPQ-activated pathogenicity-related protein; InterPro: IPR009199 Proteins in this entry are believed to play a role in virulence/pathogenicity in Salmonella. Salmonella typhi PqaA has been shown to be activated by PhoP/Q two-component regulatory system, which regulates many virulence genes []. It has been also shown to confer resistance to antimicrobial peptides (melittin) []. Members of this family are predicted to belong to the alpha/beta hydrolase domain superfamily.
Probab=97.83 E-value=0.00012 Score=78.81 Aligned_cols=153 Identities=17% Similarity=0.140 Sum_probs=106.6
Q ss_pred HHHHHHHHHHHHH----cCCCCCCcEEEEEeChHHHHHHHHHHhCCCcccEEEEcc-cCCCCCC------CCcC-cc---
Q 002209 740 VACAEAAVEEVVR----RGVAHPSKIAVGGHSYGAFMTANLLAHAPHLFCCGIARS-GAYNRTL------TPFG-FQ--- 804 (953)
Q Consensus 740 ~~D~~~~~~~l~~----~~~~d~~~i~l~G~S~GG~~a~~~a~~~p~~~~a~v~~~-~~~d~~~------~~~~-~~--- 804 (953)
+.-+..|++.+.+ ...++.++.+|.|.|==|..+..+|+.+ +|++|+|.+. .+.|... ..++ .+
T Consensus 149 tka~vrAMD~vq~~~~~~~~~~i~~FvV~GaSKRGWTtWltaa~D-~RV~aivP~Vid~LN~~~~l~h~y~~yG~~ws~a 227 (367)
T PF10142_consen 149 TKAAVRAMDAVQEFLKKKFGVNIEKFVVTGASKRGWTTWLTAAVD-PRVKAIVPIVIDVLNMKANLEHQYRSYGGNWSFA 227 (367)
T ss_pred HHHHHHHHHHHHHHHHhhcCCCccEEEEeCCchHhHHHHHhhccC-cceeEEeeEEEccCCcHHHHHHHHHHhCCCCccc
Confidence 3444445544433 3445678999999999999999999866 6899888764 2333110 0011 00
Q ss_pred -----cccchhh----hhHHHHHhcCcccccCCCCCcEEEEEeCCCCCCCCchHHHHHHHHHHHhCCCcEEEEEeCCCCc
Q 002209 805 -----NEDRTLW----EATSTYVEMSPFMSANKLKKPILLVHGEEDNNSGTLTMQSDRFFNALKGHGALCRLVILPFESH 875 (953)
Q Consensus 805 -----~~~~~~~----~~~~~~~~~sp~~~~~~i~~P~Li~~G~~D~~v~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~H 875 (953)
.+.-... +-.+...-.+|+.+.++++.|-||+.|..|+... ++.+.-++..|+. ++.+..+|+++|
T Consensus 228 ~~dY~~~gi~~~l~tp~f~~L~~ivDP~~Y~~rL~~PK~ii~atgDeFf~--pD~~~~y~d~L~G---~K~lr~vPN~~H 302 (367)
T PF10142_consen 228 FQDYYNEGITQQLDTPEFDKLMQIVDPYSYRDRLTMPKYIINATGDEFFV--PDSSNFYYDKLPG---EKYLRYVPNAGH 302 (367)
T ss_pred hhhhhHhCchhhcCCHHHHHHHHhcCHHHHHHhcCccEEEEecCCCceec--cCchHHHHhhCCC---CeeEEeCCCCCc
Confidence 0000000 0122334568999999999999999999999987 8999999999976 478999999999
Q ss_pred cCCCcccHHHHHHHHHHHHHHhccCCC
Q 002209 876 GYAARESIMHVLWETDRWLQKYCVSNT 902 (953)
Q Consensus 876 ~~~~~~~~~~~~~~i~~fl~~~l~~~~ 902 (953)
.... ..+.+.+..|+...+...+
T Consensus 303 ~~~~----~~~~~~l~~f~~~~~~~~~ 325 (367)
T PF10142_consen 303 SLIG----SDVVQSLRAFYNRIQNGRP 325 (367)
T ss_pred ccch----HHHHHHHHHHHHHHHcCCC
Confidence 8854 6678889999998776543
No 311
>KOG0289 consensus mRNA splicing factor [General function prediction only]
Probab=97.80 E-value=0.0023 Score=67.54 Aligned_cols=166 Identities=14% Similarity=0.108 Sum_probs=97.5
Q ss_pred CcccccccCCCCcEEEEEEecCCccccccCCCCCcceEEEecc-CceEEEeccCCCcccCCccccccccCccceeeccCC
Q 002209 332 AVYTSLDPSPDEKYILISSIHRPYSFIVPCGRFPRQVGVWTTD-GIFVRELCDLPLAEDIPIAFNSVRKGMRSINWRSDK 410 (953)
Q Consensus 332 ~~~~~~~~SpDG~~l~~~~~~~~~~~~~~~~~~~~~i~~~d~~-g~~~~~l~~~~~~~~~p~~~~~~~~~~~~~~wspDg 410 (953)
..++.....|.|++++.++++. ..-..|+. +.....+... .. ...+.+.+|.|||
T Consensus 304 ~~V~~ls~h~tgeYllsAs~d~-------------~w~Fsd~~~g~~lt~vs~~-~s----------~v~~ts~~fHpDg 359 (506)
T KOG0289|consen 304 EPVTGLSLHPTGEYLLSASNDG-------------TWAFSDISSGSQLTVVSDE-TS----------DVEYTSAAFHPDG 359 (506)
T ss_pred ccceeeeeccCCcEEEEecCCc-------------eEEEEEccCCcEEEEEeec-cc----------cceeEEeeEcCCc
Confidence 6677888899999999888654 22233444 3333333331 11 1234578999999
Q ss_pred CCceEEEEeccCCCcccccccCCeEEEEecCCCCCCCceEEeecccccCCeeeccCCceEEEEEecccCceEEEEEcCCC
Q 002209 411 PSTLYWAETQDGGDAKVEVTPRDIIYTQQAEPVQGEGPEILHKLDLRYGGISWCDDSLALVYESWYKTRRTRTWVISPGS 490 (953)
Q Consensus 411 ~~i~~~~~~~~~~~~~~~~~~~~~l~~~d~~~~~g~~~~~l~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~l~~~d~~~ 490 (953)
++|.+- ...+.+-+||+ ..+.....+..+.+.+..++||.+|-+|+.+.+++. ..||.+.-..
T Consensus 360 --Lifgtg-----------t~d~~vkiwdl--ks~~~~a~Fpght~~vk~i~FsENGY~Lat~add~~--V~lwDLRKl~ 422 (506)
T KOG0289|consen 360 --LIFGTG-----------TPDGVVKIWDL--KSQTNVAKFPGHTGPVKAISFSENGYWLATAADDGS--VKLWDLRKLK 422 (506)
T ss_pred --eEEecc-----------CCCceEEEEEc--CCccccccCCCCCCceeEEEeccCceEEEEEecCCe--EEEEEehhhc
Confidence 445421 34567889997 333334445567778888999999999999887653 2555443221
Q ss_pred CCCCcEEeecCCCccccCCCCCCCeEeccCCCEEEEEeeeccCCCcEEEEecCCCCCCCCCCeEEEEECCCCceEEEe
Q 002209 491 KDVAPRILFDRSSEDVYSDPGSPMMRRTSTGTYVIAKIKKENDEGTYILLNGNGATPEGNIPFLDLFDINTGSKERIW 568 (953)
Q Consensus 491 ~~~~~~~~~~~~~~~~~~~~~~p~~~~SpDG~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~d~~~~~~~~l~ 568 (953)
....+.-.....+.. +.|.+-|++|+....+ -++|.++-.++.++.+-
T Consensus 423 ---n~kt~~l~~~~~v~s------~~fD~SGt~L~~~g~~---------------------l~Vy~~~k~~k~W~~~~ 470 (506)
T KOG0289|consen 423 ---NFKTIQLDEKKEVNS------LSFDQSGTYLGIAGSD---------------------LQVYICKKKTKSWTEIK 470 (506)
T ss_pred ---ccceeecccccccee------EEEcCCCCeEEeecce---------------------eEEEEEecccccceeee
Confidence 122222111111222 6778888887665321 24667776666665553
No 312
>TIGR01849 PHB_depoly_PhaZ polyhydroxyalkanoate depolymerase, intracellular. This model represents an intracellular depolymerase for polyhydroxyalkanoate (PHA), a carbon and energy storing polyester that accumulates in granules in many bacterial species when carbon sources are abundant but other nutrients are limiting. This family is named for PHAs generally, rather than polyhydroxybutyrate (PHB) specificially as in Ralstonia eutropha H16, to avoid overcalling chemical specificity in other species. Note that this family lacks the classic GXSXG lipase motif and instead shows weak similarity to some
Probab=97.78 E-value=0.00039 Score=76.25 Aligned_cols=69 Identities=17% Similarity=0.212 Sum_probs=52.9
Q ss_pred CCCC-CcEEEEEeCCCCCCCCchHHHHHHHHHHHhCC-CcEEEEEeCCCCcc--CCCcccHHHHHHHHHHHHHHh
Q 002209 827 NKLK-KPILLVHGEEDNNSGTLTMQSDRFFNALKGHG-ALCRLVILPFESHG--YAARESIMHVLWETDRWLQKY 897 (953)
Q Consensus 827 ~~i~-~P~Li~~G~~D~~v~~~~~~~~~~~~~l~~~g-~~~~~~~~~~~~H~--~~~~~~~~~~~~~i~~fl~~~ 897 (953)
++|+ +|+|.+-|+.|.++| +.++..+.+.+...+ .+++....+++||. +........++-.+.+||.++
T Consensus 334 ~~I~~~pll~V~ge~D~I~p--~~qt~aa~~l~~~~~s~~k~~~~~~~~GH~Gvf~G~r~~~~i~P~i~~wl~~~ 406 (406)
T TIGR01849 334 GAITRVALLTVEGENDDISG--LGQTKAALRLCTGIPEDMKRHHLQPGVGHYGVFSGSRFREEIYPLVREFIRRN 406 (406)
T ss_pred HHCcccceEEEeccCCCcCC--HHHhHHHHHHhhcCChhhceEeecCCCCeEEEeeChhhhhhhchHHHHHHHhC
Confidence 5678 999999999999999 999998888764332 24556677788996 344555667888899998763
No 313
>KOG0641 consensus WD40 repeat protein [General function prediction only]
Probab=97.76 E-value=0.0035 Score=60.12 Aligned_cols=139 Identities=6% Similarity=0.014 Sum_probs=78.9
Q ss_pred ccceEEEEEc-CCce-eEeCCC-Ccc-cccccCCCCcEEEEEEecCCccccccCCCCCcceEEEecc-CceEEEeccCCC
Q 002209 312 ATTQLVLVSL-DGTV-KEIGPP-AVY-TSLDPSPDEKYILISSIHRPYSFIVPCGRFPRQVGVWTTD-GIFVRELCDLPL 386 (953)
Q Consensus 312 ~~~~l~~~~~-~g~~-~~l~~~-~~~-~~~~~SpDG~~l~~~~~~~~~~~~~~~~~~~~~i~~~d~~-g~~~~~l~~~~~ 386 (953)
+.-.||+.|. .|+. ..+... +.+ .-+.| +|-.++..+. .+.|..||+. ...++.+.+.-.
T Consensus 161 gdc~iy~tdc~~g~~~~a~sghtghilalysw--n~~m~~sgsq-------------dktirfwdlrv~~~v~~l~~~~~ 225 (350)
T KOG0641|consen 161 GDCKIYITDCGRGQGFHALSGHTGHILALYSW--NGAMFASGSQ-------------DKTIRFWDLRVNSCVNTLDNDFH 225 (350)
T ss_pred CcceEEEeecCCCCcceeecCCcccEEEEEEe--cCcEEEccCC-------------CceEEEEeeeccceeeeccCccc
Confidence 4467888888 6653 333333 222 22344 3544444332 3489999997 344444433111
Q ss_pred cccCCccccccccCccceeeccCCCCceEEEEeccCCCcccccccCCeEEEEecCCCCCCCc-eEEeecccccCCeeecc
Q 002209 387 AEDIPIAFNSVRKGMRSINWRSDKPSTLYWAETQDGGDAKVEVTPRDIIYTQQAEPVQGEGP-EILHKLDLRYGGISWCD 465 (953)
Q Consensus 387 ~~~~p~~~~~~~~~~~~~~wspDg~~i~~~~~~~~~~~~~~~~~~~~~l~~~d~~~~~g~~~-~~l~~~~~~~~~~~~Sp 465 (953)
.... ....+..++..|.|+.++-. .....-.++|+ .|+.. +....+..++..+.|||
T Consensus 226 ~~gl------essavaav~vdpsgrll~sg-------------~~dssc~lydi---rg~r~iq~f~phsadir~vrfsp 283 (350)
T KOG0641|consen 226 DGGL------ESSAVAAVAVDPSGRLLASG-------------HADSSCMLYDI---RGGRMIQRFHPHSADIRCVRFSP 283 (350)
T ss_pred CCCc------ccceeEEEEECCCcceeeec-------------cCCCceEEEEe---eCCceeeeeCCCccceeEEEeCC
Confidence 1000 00123457788888755443 22345677776 56554 34566677888999999
Q ss_pred CCceEEEEEecccCceEEEEEcCCCC
Q 002209 466 DSLALVYESWYKTRRTRTWVISPGSK 491 (953)
Q Consensus 466 Dg~~l~~~~~~~~~~~~l~~~d~~~~ 491 (953)
.-.+++..+.+. .|.+.|+++.
T Consensus 284 ~a~yllt~syd~----~ikltdlqgd 305 (350)
T KOG0641|consen 284 GAHYLLTCSYDM----KIKLTDLQGD 305 (350)
T ss_pred CceEEEEecccc----eEEEeecccc
Confidence 988887765543 5667777663
No 314
>KOG2048 consensus WD40 repeat protein [General function prediction only]
Probab=97.75 E-value=0.0014 Score=72.96 Aligned_cols=163 Identities=13% Similarity=0.119 Sum_probs=100.0
Q ss_pred CCCCceecCCCCEEEEEecCCCCCccccccccceeceEEecCCCCCCcceeeeeceEEEEccCCCCCCceeeeecCCCCC
Q 002209 110 PLPALSFSPQRDKILFLKRRALPPLEELARPEEKLAGLRIDGKCNTRSRMSFYTGIGIHQLFPDGKLGQEIEIQGFPDGA 189 (953)
Q Consensus 110 ~~~~~~~SPDG~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~i~~~~~~g~~~~~~~l~~~~~~~ 189 (953)
.+...++||||.+||+..-. +..|+.+..++ ....+.+...+...
T Consensus 384 nIs~~aiSPdg~~Ia~st~~----------------------------------~~~iy~L~~~~-~vk~~~v~~~~~~~ 428 (691)
T KOG2048|consen 384 NISCAAISPDGNLIAISTVS----------------------------------RTKIYRLQPDP-NVKVINVDDVPLAL 428 (691)
T ss_pred ceeeeccCCCCCEEEEeecc----------------------------------ceEEEEeccCc-ceeEEEeccchhhh
Confidence 46678899999999998752 22333333222 11112221122111
Q ss_pred -cccceEeccCCCeEEEEEeeccccCCCCcceEEEEECCCCceeecccCCCccccccccceEEecCCeEEEEEecCCCCC
Q 002209 190 -KLNFVTWSQDGKHLAFSIRIDAEDSSSSKLRVWVADVDTGKARPLFQSPDIYLNAIFDNFVWVNNSTLLVCTIPLLRGD 268 (953)
Q Consensus 190 -~~~~~~wSPDG~~laf~~~~~~~~~~~~~~~l~~~d~~~g~~~~lt~~~~~~~~~~~~~~~wspDg~~l~~~~~~~~~~ 268 (953)
......|+=|+..+++.+. ...+|...++++.....+........-..+..+.-||||++|+...
T Consensus 429 ~~a~~i~ftid~~k~~~~s~--------~~~~le~~el~~ps~kel~~~~~~~~~~~I~~l~~SsdG~yiaa~~------ 494 (691)
T KOG2048|consen 429 LDASAISFTIDKNKLFLVSK--------NIFSLEEFELETPSFKELKSIQSQAKCPSISRLVVSSDGNYIAAIS------ 494 (691)
T ss_pred ccceeeEEEecCceEEEEec--------ccceeEEEEecCcchhhhhccccccCCCcceeEEEcCCCCEEEEEe------
Confidence 4567788989988888652 2567788887776544332211110111266788999999999771
Q ss_pred CCCCCCCCCCCceeecCCCccccchhhhhhcCCcchhhhhhhhccceEEEEEc-CCceeEeCCC--CcccccccCC-CCc
Q 002209 269 PPKKPLVPLGPKMQSNEKRDIIQVRTFQDLLKDEYDEDLFDYYATTQLVLVSL-DGTVKEIGPP--AVYTSLDPSP-DEK 344 (953)
Q Consensus 269 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~l~~~~~-~g~~~~l~~~--~~~~~~~~Sp-DG~ 344 (953)
..++|+.+++ +++.+.+... ..++...++| +-.
T Consensus 495 -------------------------------------------t~g~I~v~nl~~~~~~~l~~rln~~vTa~~~~~~~~~ 531 (691)
T KOG2048|consen 495 -------------------------------------------TRGQIFVYNLETLESHLLKVRLNIDVTAAAFSPFVRN 531 (691)
T ss_pred -------------------------------------------ccceEEEEEcccceeecchhccCcceeeeeccccccC
Confidence 4468999999 7776666532 6677888885 555
Q ss_pred EEEEEEecCCccccccCCCCCcceEEEeccCce
Q 002209 345 YILISSIHRPYSFIVPCGRFPRQVGVWTTDGIF 377 (953)
Q Consensus 345 ~l~~~~~~~~~~~~~~~~~~~~~i~~~d~~g~~ 377 (953)
.|+....+ ++++-+|++..+
T Consensus 532 ~lvvats~-------------nQv~efdi~~~~ 551 (691)
T KOG2048|consen 532 RLVVATSN-------------NQVFEFDIEARN 551 (691)
T ss_pred cEEEEecC-------------CeEEEEecchhh
Confidence 66665533 378888885433
No 315
>KOG0313 consensus Microtubule binding protein YTM1 (contains WD40 repeats) [Cytoskeleton]
Probab=97.74 E-value=0.0052 Score=63.88 Aligned_cols=274 Identities=14% Similarity=0.124 Sum_probs=151.1
Q ss_pred CCCchhHHHhhcCCCCCCceecCCCCEEEEEecCCCCCccccccccceeceEEecCCCCCCcceeeeeceEEEEccCCCC
Q 002209 96 RLPPPEIREIVDAPPLPALSFSPQRDKILFLKRRALPPLEELARPEEKLAGLRIDGKCNTRSRMSFYTGIGIHQLFPDGK 175 (953)
Q Consensus 96 ~~~~~~~~~~~~~~~~~~~~~SPDG~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~i~~~~~~g~ 175 (953)
-.+|++...++....++++..+ +++|+..+.+ +.+.||+.. |
T Consensus 93 ~~aP~pl~~~~hdDWVSsv~~~--~~~IltgsYD---------------------------------g~~riWd~~--G- 134 (423)
T KOG0313|consen 93 ITAPKPLQCFLHDDWVSSVKGA--SKWILTGSYD---------------------------------GTSRIWDLK--G- 134 (423)
T ss_pred cCCCCccccccchhhhhhhccc--CceEEEeecC---------------------------------CeeEEEecC--C-
Confidence 3567777888877789999888 8889888775 356899984 3
Q ss_pred CCceeeeecCCCCCcccceEe-ccCCCeEEEEEeeccccCCCCcceEEEEECCCCcee--ecccCCCccccccccceEEe
Q 002209 176 LGQEIEIQGFPDGAKLNFVTW-SQDGKHLAFSIRIDAEDSSSSKLRVWVADVDTGKAR--PLFQSPDIYLNAIFDNFVWV 252 (953)
Q Consensus 176 ~~~~~~l~~~~~~~~~~~~~w-SPDG~~laf~~~~~~~~~~~~~~~l~~~d~~~g~~~--~lt~~~~~~~~~~~~~~~ws 252 (953)
.....+.+++ ..+...+| .+|...-.|... ..+-...||.++....... +...+ +.+.+.++.-.
T Consensus 135 -k~~~~~~Ght--~~ik~v~~v~~n~~~~~fvsa-----s~Dqtl~Lw~~~~~~~~~~~~~~~~G----Hk~~V~sVsv~ 202 (423)
T KOG0313|consen 135 -KSIKTIVGHT--GPIKSVAWVIKNSSSCLFVSA-----SMDQTLRLWKWNVGENKVKALKVCRG----HKRSVDSVSVD 202 (423)
T ss_pred -ceEEEEecCC--cceeeeEEEecCCccceEEEe-----cCCceEEEEEecCchhhhhHHhHhcc----cccceeEEEec
Confidence 3455565544 45666666 344432233331 1334567788776543322 22222 33347788888
Q ss_pred cCCeEEEEEecCCCCCCCCCCCCCCCCceeecCCCccccchhhhhhcCCcchhhhhhhhccceEEEEE-cCC--ce-eEe
Q 002209 253 NNSTLLVCTIPLLRGDPPKKPLVPLGPKMQSNEKRDIIQVRTFQDLLKDEYDEDLFDYYATTQLVLVS-LDG--TV-KEI 328 (953)
Q Consensus 253 pDg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~l~~~~-~~g--~~-~~l 328 (953)
+||.+++.++-+.... +|+.+...... .....+++.. .-... ..| .+ ..+
T Consensus 203 ~sgtr~~SgS~D~~lk------------iWs~~~~~~~~----~E~~s~~rrk----------~~~~~~~~~~r~P~vtl 256 (423)
T KOG0313|consen 203 SSGTRFCSGSWDTMLK------------IWSVETDEEDE----LESSSNRRRK----------KQKREKEGGTRTPLVTL 256 (423)
T ss_pred CCCCeEEeecccceee------------ecccCCCcccc----ccccchhhhh----------hhhhhhcccccCceEEe
Confidence 9999888663332221 22200000000 0000000000 00000 112 11 122
Q ss_pred CCC-CcccccccCCCCcEEEEEEecCCccccccCCCCCcceEEEecc-CceEEEeccCCCcccCCccccccccCccceee
Q 002209 329 GPP-AVYTSLDPSPDEKYILISSIHRPYSFIVPCGRFPRQVGVWTTD-GIFVRELCDLPLAEDIPIAFNSVRKGMRSINW 406 (953)
Q Consensus 329 ~~~-~~~~~~~~SpDG~~l~~~~~~~~~~~~~~~~~~~~~i~~~d~~-g~~~~~l~~~~~~~~~p~~~~~~~~~~~~~~w 406 (953)
... ..+.++.|++. ..+|+.. +...|.+||+. ++....++... ....+..
T Consensus 257 ~GHt~~Vs~V~w~d~--~v~yS~S------------wDHTIk~WDletg~~~~~~~~~k--------------sl~~i~~ 308 (423)
T KOG0313|consen 257 EGHTEPVSSVVWSDA--TVIYSVS------------WDHTIKVWDLETGGLKSTLTTNK--------------SLNCISY 308 (423)
T ss_pred cccccceeeEEEcCC--CceEeec------------ccceEEEEEeecccceeeeecCc--------------ceeEeec
Confidence 223 67888999983 3555542 23489999998 44444444421 1134667
Q ss_pred ccCCCCceEEEEeccCCCcccccccCCeEEEEecCCCCC-CCc--eEEeecccccCCeeeccCCceEEEEEecccCceEE
Q 002209 407 RSDKPSTLYWAETQDGGDAKVEVTPRDIIYTQQAEPVQG-EGP--EILHKLDLRYGGISWCDDSLALVYESWYKTRRTRT 483 (953)
Q Consensus 407 spDg~~i~~~~~~~~~~~~~~~~~~~~~l~~~d~~~~~g-~~~--~~l~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~l 483 (953)
+|..+.|+-. +...++.++| |.++ +.. ..+..+..-+..+.|+|-..+++.+...++. .+|
T Consensus 309 ~~~~~Ll~~g-------------ssdr~irl~D--PR~~~gs~v~~s~~gH~nwVssvkwsp~~~~~~~S~S~D~t-~kl 372 (423)
T KOG0313|consen 309 SPLSKLLASG-------------SSDRHIRLWD--PRTGDGSVVSQSLIGHKNWVSSVKWSPTNEFQLVSGSYDNT-VKL 372 (423)
T ss_pred ccccceeeec-------------CCCCceeecC--CCCCCCceeEEeeecchhhhhheecCCCCceEEEEEecCCe-EEE
Confidence 7776655544 4455788998 4443 222 2356777788999999999887776655532 477
Q ss_pred EEEcCC
Q 002209 484 WVISPG 489 (953)
Q Consensus 484 ~~~d~~ 489 (953)
|-+...
T Consensus 373 WDvRS~ 378 (423)
T KOG0313|consen 373 WDVRST 378 (423)
T ss_pred EEeccC
Confidence 766543
No 316
>TIGR03502 lipase_Pla1_cef extracellular lipase, Pla-1/cef family. Members of this protein family are bacterial lipoproteins largely from the Gammaproteobacteria. Characterized members are expressed in extracellularly and have esterase activity. Members include the lipase Pla-1 from Aeromonas hydrophila (AF092033) and CHO cell elongation factor (cef) from Vibrio hollisae
Probab=97.74 E-value=0.00018 Score=84.85 Aligned_cols=93 Identities=16% Similarity=0.060 Sum_probs=63.4
Q ss_pred ccEEEEeCCCCCcCcCCCCcccCCCCCCCCccchHHHHHHHcCcEEEEcCCCCCCCCCChhhh-----------------
Q 002209 670 LPCLFWSYPGEFKSKDAAGQVRGSPNEFPRIGSTSVLLWLARGFAILGGPTTPIIGEGDEEAN----------------- 732 (953)
Q Consensus 670 ~P~vv~~hGg~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~G~~V~~~~~~~~~G~G~~~~~----------------- 732 (953)
.|+||++||... ........+..|+++||.|+++| .+|+|.+...
T Consensus 449 ~P~VVllHG~~g---------------~~~~~~~lA~~La~~Gy~VIaiD---lpGHG~S~~~~~~~~~~a~~~~~~~y~ 510 (792)
T TIGR03502 449 WPVVIYQHGITG---------------AKENALAFAGTLAAAGVATIAID---HPLHGARSFDANASGVNATNANVLAYM 510 (792)
T ss_pred CcEEEEeCCCCC---------------CHHHHHHHHHHHHhCCcEEEEeC---CCCCCccccccccccccccccCcccee
Confidence 689999999421 00111234566788999999954 4566665111
Q ss_pred --------hhhHHHHHHHHHHHHHHHH------Hc----CCCCCCcEEEEEeChHHHHHHHHHHhC
Q 002209 733 --------DRFVEQLVACAEAAVEEVV------RR----GVAHPSKIAVGGHSYGAFMTANLLAHA 780 (953)
Q Consensus 733 --------~~~~~~~~~D~~~~~~~l~------~~----~~~d~~~i~l~G~S~GG~~a~~~a~~~ 780 (953)
++-+.+.+.|+......+. +. ...+..++.++||||||.++..++...
T Consensus 511 Nl~~l~~aRDn~rQ~v~Dll~L~~~l~~~~~~~~~~~~~~~~~~~~V~~lGHSLGgiig~~~~~~a 576 (792)
T TIGR03502 511 NLASLLVARDNLRQSILDLLGLRLSLNGSALAGAPLSGINVIDGSKVSFLGHSLGGIVGTSFIAYA 576 (792)
T ss_pred ccccccccccCHHHHHHHHHHHHHHHhcccccccccccccCCCCCcEEEEecCHHHHHHHHHHHhc
Confidence 1235777889888887776 21 124567999999999999999998753
No 317
>KOG1524 consensus WD40 repeat-containing protein CHE-2 [General function prediction only]
Probab=97.73 E-value=0.00091 Score=72.10 Aligned_cols=139 Identities=9% Similarity=0.045 Sum_probs=77.0
Q ss_pred CCceeEe-CCC-CcccccccCCCCcEEEEEEecCCccccccCCCCCcceEEEecc-CceEEEeccCCCcccCCccccccc
Q 002209 322 DGTVKEI-GPP-AVYTSLDPSPDEKYILISSIHRPYSFIVPCGRFPRQVGVWTTD-GIFVRELCDLPLAEDIPIAFNSVR 398 (953)
Q Consensus 322 ~g~~~~l-~~~-~~~~~~~~SpDG~~l~~~~~~~~~~~~~~~~~~~~~i~~~d~~-g~~~~~l~~~~~~~~~p~~~~~~~ 398 (953)
+|..+.. ... ..+..++|.||...++|.... .+++-.+. ...+-+...+.
T Consensus 134 sGMLRStl~Q~~~~v~c~~W~p~S~~vl~c~g~--------------h~~IKpL~~n~k~i~WkAHD------------- 186 (737)
T KOG1524|consen 134 SGMLRSTVVQNEESIRCARWAPNSNSIVFCQGG--------------HISIKPLAANSKIIRWRAHD------------- 186 (737)
T ss_pred cchHHHHHhhcCceeEEEEECCCCCceEEecCC--------------eEEEeecccccceeEEeccC-------------
Confidence 6644332 222 667889999999999998732 45554443 11222222221
Q ss_pred cCccceeeccCCCCceEEEEeccCCCcccccccCCeEEEEecCCCCCCCceEEeecccccCCeeeccCCceEEEEEeccc
Q 002209 399 KGMRSINWRSDKPSTLYWAETQDGGDAKVEVTPRDIIYTQQAEPVQGEGPEILHKLDLRYGGISWCDDSLALVYESWYKT 478 (953)
Q Consensus 399 ~~~~~~~wspDg~~i~~~~~~~~~~~~~~~~~~~~~l~~~d~~~~~g~~~~~l~~~~~~~~~~~~SpDg~~l~~~~~~~~ 478 (953)
+-+-.+.|++.+..|+-. +++-+.-+||. .|...-.-..++..+.+++|.||..+++.+.+
T Consensus 187 GiiL~~~W~~~s~lI~sg-------------GED~kfKvWD~---~G~~Lf~S~~~ey~ITSva~npd~~~~v~S~n--- 247 (737)
T KOG1524|consen 187 GLVLSLSWSTQSNIIASG-------------GEDFRFKIWDA---QGANLFTSAAEEYAITSVAFNPEKDYLLWSYN--- 247 (737)
T ss_pred cEEEEeecCccccceeec-------------CCceeEEeecc---cCcccccCChhccceeeeeeccccceeeeeee---
Confidence 223457788877755443 23335557774 33222122345777889999999444443321
Q ss_pred CceEEEEEcCCCCCCCcEEeecCCCccccCCCCCCCeEeccCCCEEEEEe
Q 002209 479 RRTRTWVISPGSKDVAPRILFDRSSEDVYSDPGSPMMRRTSTGTYVIAKI 528 (953)
Q Consensus 479 ~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~SpDG~~l~~~~ 528 (953)
.+..-. ...+.++. ++||+||..++...
T Consensus 248 ---t~R~~~-------------p~~GSifn------lsWS~DGTQ~a~gt 275 (737)
T KOG1524|consen 248 ---TARFSS-------------PRVGSIFN------LSWSADGTQATCGT 275 (737)
T ss_pred ---eeeecC-------------CCccceEE------EEEcCCCceeeccc
Confidence 111111 11222333 88999999888764
No 318
>KOG0771 consensus Prolactin regulatory element-binding protein/Protein transport protein SEC12p [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.73 E-value=0.00061 Score=71.71 Aligned_cols=73 Identities=12% Similarity=-0.060 Sum_probs=46.6
Q ss_pred CccceeeccCCCCceEEEEeccCCCcccccccCCeEEEEecCCCCCCCceEE--eecccccCCeeeccCCceEEEEEecc
Q 002209 400 GMRSINWRSDKPSTLYWAETQDGGDAKVEVTPRDIIYTQQAEPVQGEGPEIL--HKLDLRYGGISWCDDSLALVYESWYK 477 (953)
Q Consensus 400 ~~~~~~wspDg~~i~~~~~~~~~~~~~~~~~~~~~l~~~d~~~~~g~~~~~l--~~~~~~~~~~~~SpDg~~l~~~~~~~ 477 (953)
++.+++.|+||+.++.. +-.+.|-++++ ..=+...+ ..+...+..+.|+||.++++-.+.+.
T Consensus 283 siSsl~VS~dGkf~AlG-------------T~dGsVai~~~---~~lq~~~~vk~aH~~~VT~ltF~Pdsr~~~svSs~~ 346 (398)
T KOG0771|consen 283 SISSLAVSDDGKFLALG-------------TMDGSVAIYDA---KSLQRLQYVKEAHLGFVTGLTFSPDSRYLASVSSDN 346 (398)
T ss_pred cceeEEEcCCCcEEEEe-------------ccCCcEEEEEe---ceeeeeEeehhhheeeeeeEEEcCCcCcccccccCC
Confidence 45689999999988877 33445666664 21122222 23455678899999999988765443
Q ss_pred cCceEEEEEcCCC
Q 002209 478 TRRTRTWVISPGS 490 (953)
Q Consensus 478 ~~~~~l~~~d~~~ 490 (953)
+ .+|..+..+.
T Consensus 347 ~--~~v~~l~vd~ 357 (398)
T KOG0771|consen 347 E--AAVTKLAVDK 357 (398)
T ss_pred c--eeEEEEeecc
Confidence 2 3566665543
No 319
>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]
Probab=97.73 E-value=0.0013 Score=72.66 Aligned_cols=57 Identities=19% Similarity=0.314 Sum_probs=44.2
Q ss_pred cccceEeccCCCeEEEEEeeccccCCCCcceEEEEECCCCce-eecccCCCccccccccceEEecCCeEEEEE
Q 002209 190 KLNFVTWSQDGKHLAFSIRIDAEDSSSSKLRVWVADVDTGKA-RPLFQSPDIYLNAIFDNFVWVNNSTLLVCT 261 (953)
Q Consensus 190 ~~~~~~wSPDG~~laf~~~~~~~~~~~~~~~l~~~d~~~g~~-~~lt~~~~~~~~~~~~~~~wspDg~~l~~~ 261 (953)
-+....|-|||..|+... +..|+++|+..|.. ..|-.+.+. +.-++||.||++++..
T Consensus 14 ci~d~afkPDGsqL~lAA----------g~rlliyD~ndG~llqtLKgHKDt-----VycVAys~dGkrFASG 71 (1081)
T KOG1538|consen 14 CINDIAFKPDGTQLILAA----------GSRLLVYDTSDGTLLQPLKGHKDT-----VYCVAYAKDGKRFASG 71 (1081)
T ss_pred chheeEECCCCceEEEec----------CCEEEEEeCCCcccccccccccce-----EEEEEEccCCceeccC
Confidence 578899999999999876 56899999986654 444333332 7789999999998854
No 320
>PF10647 Gmad1: Lipoprotein LpqB beta-propeller domain; InterPro: IPR018910 The Gmad1 domain is found associated with IPR019606 from INTERPRO, in bacterial spore formation. It is predicted to have a beta-propeller fold and to have a passive binding role rather than a catalytic function owing to the low number of conserved hydrophilic residues.
Probab=97.72 E-value=0.0033 Score=65.67 Aligned_cols=59 Identities=14% Similarity=0.215 Sum_probs=42.5
Q ss_pred cccceEeccCCCeEEEEEeeccccCCCCcceEEEEECCCCceeecccCCCccccccccceEEecCCeEEEEE
Q 002209 190 KLNFVTWSQDGKHLAFSIRIDAEDSSSSKLRVWVADVDTGKARPLFQSPDIYLNAIFDNFVWVNNSTLLVCT 261 (953)
Q Consensus 190 ~~~~~~wSPDG~~laf~~~~~~~~~~~~~~~l~~~d~~~g~~~~lt~~~~~~~~~~~~~~~wspDg~~l~~~ 261 (953)
....+++||||+.+||... .++...||+...++. ...+..... +..+.|+++|...++.
T Consensus 25 ~~~s~AvS~dg~~~A~v~~------~~~~~~L~~~~~~~~-~~~~~~g~~------l~~PS~d~~g~~W~v~ 83 (253)
T PF10647_consen 25 DVTSPAVSPDGSRVAAVSE------GDGGRSLYVGPAGGP-VRPVLTGGS------LTRPSWDPDGWVWTVD 83 (253)
T ss_pred cccceEECCCCCeEEEEEE------cCCCCEEEEEcCCCc-ceeeccCCc------cccccccCCCCEEEEE
Confidence 6889999999999999872 346789999986554 333332222 6689999997655544
No 321
>KOG1063 consensus RNA polymerase II elongator complex, subunit ELP2, WD repeat superfamily [Chromatin structure and dynamics; Transcription]
Probab=97.71 E-value=0.011 Score=66.31 Aligned_cols=78 Identities=9% Similarity=-0.017 Sum_probs=50.8
Q ss_pred cccCccceeeccCCCCceEEEEeccCCCcccccccCCeEEEEecCCCCCCCceEEeecccccCCeeeccCCceEEEEEec
Q 002209 397 VRKGMRSINWRSDKPSTLYWAETQDGGDAKVEVTPRDIIYTQQAEPVQGEGPEILHKLDLRYGGISWCDDSLALVYESWY 476 (953)
Q Consensus 397 ~~~~~~~~~wspDg~~i~~~~~~~~~~~~~~~~~~~~~l~~~d~~~~~g~~~~~l~~~~~~~~~~~~SpDg~~l~~~~~~ 476 (953)
+...+..++-||+|+.|+-....+. -....|++|+. ..=.+...|..+...+..++|||||++|+..+.+
T Consensus 524 HGyEv~~l~~s~~gnliASaCKS~~--------~ehAvI~lw~t--~~W~~~~~L~~HsLTVT~l~FSpdg~~LLsvsRD 593 (764)
T KOG1063|consen 524 HGYEVYALAISPTGNLIASACKSSL--------KEHAVIRLWNT--ANWLQVQELEGHSLTVTRLAFSPDGRYLLSVSRD 593 (764)
T ss_pred CceeEEEEEecCCCCEEeehhhhCC--------ccceEEEEEec--cchhhhheecccceEEEEEEECCCCcEEEEeecC
Confidence 3334567888999986665522211 23446888873 2112334577788888999999999999988755
Q ss_pred ccCceEEEEE
Q 002209 477 KTRRTRTWVI 486 (953)
Q Consensus 477 ~~~~~~l~~~ 486 (953)
.. ..||..
T Consensus 594 Rt--~sl~~~ 601 (764)
T KOG1063|consen 594 RT--VSLYEV 601 (764)
T ss_pred ce--EEeeee
Confidence 43 356655
No 322
>KOG2394 consensus WD40 protein DMR-N9 [General function prediction only]
Probab=97.71 E-value=0.0094 Score=64.80 Aligned_cols=68 Identities=10% Similarity=0.055 Sum_probs=42.4
Q ss_pred EeecccccCCeeeccCCceEEEEEecccCceEEEEEcCCCCCCCcEEeecCCCccccCCCCCCCeEeccCCCEEEEEeee
Q 002209 451 LHKLDLRYGGISWCDDSLALVYESWYKTRRTRTWVISPGSKDVAPRILFDRSSEDVYSDPGSPMMRRTSTGTYVIAKIKK 530 (953)
Q Consensus 451 l~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~SpDG~~l~~~~~~ 530 (953)
+......+..++|||||+.|+..+.++ ..||+-++ +- +.+-+...-+..+.. +.||||||+|+....+
T Consensus 286 w~~~~g~in~f~FS~DG~~LA~VSqDG--fLRvF~fd--t~--eLlg~mkSYFGGLLC------vcWSPDGKyIvtGGED 353 (636)
T KOG2394|consen 286 WHIGEGSINEFAFSPDGKYLATVSQDG--FLRIFDFD--TQ--ELLGVMKSYFGGLLC------VCWSPDGKYIVTGGED 353 (636)
T ss_pred eEeccccccceeEcCCCceEEEEecCc--eEEEeecc--HH--HHHHHHHhhccceEE------EEEcCCccEEEecCCc
Confidence 344455678899999999999987654 23454444 31 222222222222222 8999999999988643
No 323
>PF11144 DUF2920: Protein of unknown function (DUF2920); InterPro: IPR022605 This bacterial family of proteins has no known function.
Probab=97.65 E-value=0.0012 Score=71.14 Aligned_cols=136 Identities=18% Similarity=0.157 Sum_probs=89.3
Q ss_pred hhHHHHHHHHHHHHHHHHHcCCC--CCCcEEEEEeChHHHHHHHHHHhCCCcccEEEEcccCCCCC--CC---CcC----
Q 002209 734 RFVEQLVACAEAAVEEVVRRGVA--HPSKIAVGGHSYGAFMTANLLAHAPHLFCCGIARSGAYNRT--LT---PFG---- 802 (953)
Q Consensus 734 ~~~~~~~~D~~~~~~~l~~~~~~--d~~~i~l~G~S~GG~~a~~~a~~~p~~~~a~v~~~~~~d~~--~~---~~~---- 802 (953)
+++-...-|++.|+.++.+.-.- +.-++.++|+|+||++|..++--.|..|.+++--++..-.. +. ..+
T Consensus 157 N~GIMqAiD~INAl~~l~k~~~~~~~~lp~I~~G~s~G~yla~l~~k~aP~~~~~~iDns~~~~p~l~~I~Gre~~~~~y 236 (403)
T PF11144_consen 157 NFGIMQAIDIINALLDLKKIFPKNGGGLPKIYIGSSHGGYLAHLCAKIAPWLFDGVIDNSSYALPPLRYIFGREIDFMKY 236 (403)
T ss_pred hhHHHHHHHHHHHHHHHHHhhhcccCCCcEEEEecCcHHHHHHHHHhhCccceeEEEecCccccchhheeeeeecCcccc
Confidence 44455578999999999886322 23489999999999999999999999999988777643211 00 000
Q ss_pred -----c--------ccccchhhhh---------HHHHHhcCccc--c---cCCC-CCc-EEEEEeCCCCCCCCchHHHHH
Q 002209 803 -----F--------QNEDRTLWEA---------TSTYVEMSPFM--S---ANKL-KKP-ILLVHGEEDNNSGTLTMQSDR 853 (953)
Q Consensus 803 -----~--------~~~~~~~~~~---------~~~~~~~sp~~--~---~~~i-~~P-~Li~~G~~D~~v~~~~~~~~~ 853 (953)
+ .....+.|.. .+.+.-++.++ + -++. +.| ....|+..|..+| .++-.+
T Consensus 237 ~~~~~~~~~~~~~i~~~~Kt~Wt~n~~S~~~Fs~~~~~IR~iLn~~HL~iqs~~n~~~~yvsYHs~~D~~~p--~~~K~~ 314 (403)
T PF11144_consen 237 ICSGEFFNFKNIRIYCFDKTFWTRNKNSPYYFSKARYIIRSILNPDHLKIQSNYNKKIIYVSYHSIKDDLAP--AEDKEE 314 (403)
T ss_pred cccccccccCCEEEEEEeccccccCCCCccccChHHHHHHHhcChHHHHHHHhcccceEEEEEeccCCCCCC--HHHHHH
Confidence 0 0011334532 11111111111 1 1122 334 4556999999998 999999
Q ss_pred HHHHHHhCCCcEEEEEeC
Q 002209 854 FFNALKGHGALCRLVILP 871 (953)
Q Consensus 854 ~~~~l~~~g~~~~~~~~~ 871 (953)
+++.++..|.++++.++.
T Consensus 315 l~~~l~~lgfda~l~lIk 332 (403)
T PF11144_consen 315 LYEILKNLGFDATLHLIK 332 (403)
T ss_pred HHHHHHHcCCCeEEEEec
Confidence 999999999999999884
No 324
>KOG0641 consensus WD40 repeat protein [General function prediction only]
Probab=97.65 E-value=0.0094 Score=57.29 Aligned_cols=111 Identities=11% Similarity=0.149 Sum_probs=63.3
Q ss_pred cccccccCCCCcEEEEEEecCCccccccCCCCCcceEEEeccCceEEE-eccCCCcccCCccccccccCccceeeccCCC
Q 002209 333 VYTSLDPSPDEKYILISSIHRPYSFIVPCGRFPRQVGVWTTDGIFVRE-LCDLPLAEDIPIAFNSVRKGMRSINWRSDKP 411 (953)
Q Consensus 333 ~~~~~~~SpDG~~l~~~~~~~~~~~~~~~~~~~~~i~~~d~~g~~~~~-l~~~~~~~~~p~~~~~~~~~~~~~~wspDg~ 411 (953)
.+..++..|.|+.|+....+. ...+||+.|+...+ ...+. ..++.+.|||..-
T Consensus 233 avaav~vdpsgrll~sg~~ds-------------sc~lydirg~r~iq~f~phs-------------adir~vrfsp~a~ 286 (350)
T KOG0641|consen 233 AVAAVAVDPSGRLLASGHADS-------------SCMLYDIRGGRMIQRFHPHS-------------ADIRCVRFSPGAH 286 (350)
T ss_pred eeEEEEECCCcceeeeccCCC-------------ceEEEEeeCCceeeeeCCCc-------------cceeEEEeCCCce
Confidence 456788999999887655332 66789998776543 22221 3457889999543
Q ss_pred CceEEEEeccCCCcccccccCCeEEEEecCCCCCCCceE-----EeecccccCCeeeccCCceEEEEEecccCceEEEEE
Q 002209 412 STLYWAETQDGGDAKVEVTPRDIIYTQQAEPVQGEGPEI-----LHKLDLRYGGISWCDDSLALVYESWYKTRRTRTWVI 486 (953)
Q Consensus 412 ~i~~~~~~~~~~~~~~~~~~~~~l~~~d~~~~~g~~~~~-----l~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~l~~~ 486 (953)
.++-- +....|.+-|+ .|.-..+ +..+....-...|.|..-.++.++.+.+ ..||.+
T Consensus 287 yllt~-------------syd~~ikltdl---qgdla~el~~~vv~ehkdk~i~~rwh~~d~sfisssadkt--~tlwa~ 348 (350)
T KOG0641|consen 287 YLLTC-------------SYDMKIKLTDL---QGDLAHELPIMVVAEHKDKAIQCRWHPQDFSFISSSADKT--ATLWAL 348 (350)
T ss_pred EEEEe-------------cccceEEEeec---ccchhhcCceEEEEeccCceEEEEecCccceeeeccCcce--EEEecc
Confidence 22221 33456777775 4433222 2233344455778887655444433332 257765
Q ss_pred c
Q 002209 487 S 487 (953)
Q Consensus 487 d 487 (953)
+
T Consensus 349 ~ 349 (350)
T KOG0641|consen 349 N 349 (350)
T ss_pred C
Confidence 4
No 325
>PF10230 DUF2305: Uncharacterised conserved protein (DUF2305); InterPro: IPR019363 This entry contains proteins that have no known function.
Probab=97.64 E-value=0.00074 Score=71.04 Aligned_cols=107 Identities=16% Similarity=0.158 Sum_probs=65.8
Q ss_pred ccEEEEeCCCCCcCcCCCCcccCCCCCCCCccchHHHHHHH---cCcEEEEcCCCCCCCCCChhhh-----hhh---HHH
Q 002209 670 LPCLFWSYPGEFKSKDAAGQVRGSPNEFPRIGSTSVLLWLA---RGFAILGGPTTPIIGEGDEEAN-----DRF---VEQ 738 (953)
Q Consensus 670 ~P~vv~~hGg~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~---~G~~V~~~~~~~~~G~G~~~~~-----~~~---~~~ 738 (953)
.++++++-|.|.. ..++..+...|.+ ..|.|+. .+..|+...... ... .+.
T Consensus 2 ~~li~~IPGNPGl---------------v~fY~~Fl~~L~~~l~~~~~i~~---ish~Gh~~~~~~~~~~~~~~~~sL~~ 63 (266)
T PF10230_consen 2 RPLIVFIPGNPGL---------------VEFYEEFLSALYEKLNPQFEILG---ISHAGHSTSPSNSKFSPNGRLFSLQD 63 (266)
T ss_pred cEEEEEECCCCCh---------------HHHHHHHHHHHHHhCCCCCeeEE---ecCCCCcCCcccccccCCCCccCHHH
Confidence 4688999997632 2233344444443 4799998 455555443222 111 222
Q ss_pred HHHHHHHHHHHHHHcCCCCCCcEEEEEeChHHHHHHHHHHhCC---CcccEEEEcccCC
Q 002209 739 LVACAEAAVEEVVRRGVAHPSKIAVGGHSYGAFMTANLLAHAP---HLFCCGIARSGAY 794 (953)
Q Consensus 739 ~~~D~~~~~~~l~~~~~~d~~~i~l~G~S~GG~~a~~~a~~~p---~~~~a~v~~~~~~ 794 (953)
-++-..+.++.+.........++.++|||.|++|++.++-+.+ ..++.++...|..
T Consensus 64 QI~hk~~~i~~~~~~~~~~~~~liLiGHSIGayi~levl~r~~~~~~~V~~~~lLfPTi 122 (266)
T PF10230_consen 64 QIEHKIDFIKELIPQKNKPNVKLILIGHSIGAYIALEVLKRLPDLKFRVKKVILLFPTI 122 (266)
T ss_pred HHHHHHHHHHHHhhhhcCCCCcEEEEeCcHHHHHHHHHHHhccccCCceeEEEEeCCcc
Confidence 3333334444444332113568999999999999999999998 5788888877753
No 326
>PF10647 Gmad1: Lipoprotein LpqB beta-propeller domain; InterPro: IPR018910 The Gmad1 domain is found associated with IPR019606 from INTERPRO, in bacterial spore formation. It is predicted to have a beta-propeller fold and to have a passive binding role rather than a catalytic function owing to the low number of conserved hydrophilic residues.
Probab=97.63 E-value=0.0018 Score=67.64 Aligned_cols=103 Identities=14% Similarity=0.158 Sum_probs=60.6
Q ss_pred CCCCceecCCCCEEEEEecCCCCCccccccccceeceEEecCCCCCCcceeeeeceEEEEccCCCCCCceeeeecCCCCC
Q 002209 110 PLPALSFSPQRDKILFLKRRALPPLEELARPEEKLAGLRIDGKCNTRSRMSFYTGIGIHQLFPDGKLGQEIEIQGFPDGA 189 (953)
Q Consensus 110 ~~~~~~~SPDG~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~i~~~~~~g~~~~~~~l~~~~~~~ 189 (953)
.+..+++||||+.+|++... +... .|++... ++ ....+ + .+.
T Consensus 25 ~~~s~AvS~dg~~~A~v~~~------------------------~~~~------~L~~~~~--~~---~~~~~--~-~g~ 66 (253)
T PF10647_consen 25 DVTSPAVSPDGSRVAAVSEG------------------------DGGR------SLYVGPA--GG---PVRPV--L-TGG 66 (253)
T ss_pred cccceEECCCCCeEEEEEEc------------------------CCCC------EEEEEcC--CC---cceee--c-cCC
Confidence 46789999999999999831 1222 5677654 22 22222 1 334
Q ss_pred cccceEeccCCCeEEEEEeeccccCCCCcceEEEEECCCCc--eeecccCCCccccccccceEEecCCeEEEEE
Q 002209 190 KLNFVTWSQDGKHLAFSIRIDAEDSSSSKLRVWVADVDTGK--ARPLFQSPDIYLNAIFDNFVWVNNSTLLVCT 261 (953)
Q Consensus 190 ~~~~~~wSPDG~~laf~~~~~~~~~~~~~~~l~~~d~~~g~--~~~lt~~~~~~~~~~~~~~~wspDg~~l~~~ 261 (953)
....|+|++||...++ .+ ++....++. +...++ ...+...... ..+..+.+||||.++++.
T Consensus 67 ~l~~PS~d~~g~~W~v-~~------~~~~~~~~~-~~~~g~~~~~~v~~~~~~---~~I~~l~vSpDG~RvA~v 129 (253)
T PF10647_consen 67 SLTRPSWDPDGWVWTV-DD------GSGGVRVVR-DSASGTGEPVEVDWPGLR---GRITALRVSPDGTRVAVV 129 (253)
T ss_pred ccccccccCCCCEEEE-Ec------CCCceEEEE-ecCCCcceeEEecccccC---CceEEEEECCCCcEEEEE
Confidence 7899999999754444 32 222333333 322333 3333222211 127899999999999988
No 327
>PF05677 DUF818: Chlamydia CHLPS protein (DUF818); InterPro: IPR008536 This family of unknown function includes several Chlamydia CHLPS proteins and Legionella SidB proteins.
Probab=97.63 E-value=0.00099 Score=69.34 Aligned_cols=123 Identities=18% Similarity=0.133 Sum_probs=80.5
Q ss_pred ceEEEEEEcCCCcEEEEEEEcCCCCCCCCCCCccEEEEeCCCCCcCcCCCCcccCCCCCCC-CccchHHHHHH-HcCcEE
Q 002209 638 QKELIKYQRKDGVQLSATLYLPPGYDPSKDGPLPCLFWSYPGEFKSKDAAGQVRGSPNEFP-RIGSTSVLLWL-ARGFAI 715 (953)
Q Consensus 638 ~~~~~~~~~~dg~~~~~~l~~P~~~~~~~~~~~P~vv~~hGg~~~~~~~~~~~~~~~~~~~-~~~~~~~~~la-~~G~~V 715 (953)
...++.++. |+..+.+....-+...+ ---||++-|... .+.. ... .........++ ..|..|
T Consensus 111 ~~kRv~Iq~-D~~~IDt~~I~~~~a~~-----~RWiL~s~GNg~-------~~E~---~~~~~~~~~~~~~~ak~~~aNv 174 (365)
T PF05677_consen 111 SVKRVPIQY-DGVKIDTMAIHQPEAKP-----QRWILVSNGNGE-------CYEN---RAMLDYKDDWIQRFAKELGANV 174 (365)
T ss_pred ceeeEEEee-CCEEEEEEEeeCCCCCC-----CcEEEEEcCChH-------Hhhh---hhhhccccHHHHHHHHHcCCcE
Confidence 467788886 88999887765223222 234777766310 0010 000 00111223344 478999
Q ss_pred EEcCCCCCCCCCChhhhhhhHHHHHHHHHHHHHHHHHcC-CCCCCcEEEEEeChHHHHHHHHHHhC
Q 002209 716 LGGPTTPIIGEGDEEANDRFVEQLVACAEAAVEEVVRRG-VAHPSKIAVGGHSYGAFMTANLLAHA 780 (953)
Q Consensus 716 ~~~~~~~~~G~G~~~~~~~~~~~~~~D~~~~~~~l~~~~-~~d~~~i~l~G~S~GG~~a~~~a~~~ 780 (953)
+.++| +|.|.|.+..+ ...++.|..+.++||+++. .+.+++|.+.|||+||.++..++.+.
T Consensus 175 l~fNY---pGVg~S~G~~s-~~dLv~~~~a~v~yL~d~~~G~ka~~Ii~yG~SLGG~Vqa~AL~~~ 236 (365)
T PF05677_consen 175 LVFNY---PGVGSSTGPPS-RKDLVKDYQACVRYLRDEEQGPKAKNIILYGHSLGGGVQAEALKKE 236 (365)
T ss_pred EEECC---CccccCCCCCC-HHHHHHHHHHHHHHHHhcccCCChheEEEeeccccHHHHHHHHHhc
Confidence 99555 67777766554 4899999999999998753 46789999999999999998866554
No 328
>KOG3253 consensus Predicted alpha/beta hydrolase [General function prediction only]
Probab=97.63 E-value=0.0012 Score=72.78 Aligned_cols=102 Identities=17% Similarity=0.215 Sum_probs=72.1
Q ss_pred CCCCCCcEEEEEeChHHHHHHHHHHhCCC-cccEEEEcccCCCCCCCCcCcccccchhhhhHHHHHhcCcccccCCCCCc
Q 002209 754 GVAHPSKIAVGGHSYGAFMTANLLAHAPH-LFCCGIARSGAYNRTLTPFGFQNEDRTLWEATSTYVEMSPFMSANKLKKP 832 (953)
Q Consensus 754 ~~~d~~~i~l~G~S~GG~~a~~~a~~~p~-~~~a~v~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~sp~~~~~~i~~P 832 (953)
+..-..+|.|+|+|||+.++..+.....+ .+.|+|++.-.++...-+.+. +-+.+-.++.|
T Consensus 245 gefpha~IiLvGrsmGAlVachVSpsnsdv~V~~vVCigypl~~vdgprgi------------------rDE~Lldmk~P 306 (784)
T KOG3253|consen 245 GEFPHAPIILVGRSMGALVACHVSPSNSDVEVDAVVCIGYPLDTVDGPRGI------------------RDEALLDMKQP 306 (784)
T ss_pred ccCCCCceEEEecccCceeeEEeccccCCceEEEEEEecccccCCCcccCC------------------cchhhHhcCCc
Confidence 34456789999999998888877766543 367777765433321111111 11223346899
Q ss_pred EEEEEeCCCCCCCCchHHHHHHHHHHHhCCCcEEEEEeCCCCccCC
Q 002209 833 ILLVHGEEDNNSGTLTMQSDRFFNALKGHGALCRLVILPFESHGYA 878 (953)
Q Consensus 833 ~Li~~G~~D~~v~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~H~~~ 878 (953)
+||+.|.+|..++ ++..+++.+++++. ++++++.+++|.+.
T Consensus 307 VLFV~Gsnd~mcs--pn~ME~vreKMqA~---~elhVI~~adhsma 347 (784)
T KOG3253|consen 307 VLFVIGSNDHMCS--PNSMEEVREKMQAE---VELHVIGGADHSMA 347 (784)
T ss_pred eEEEecCCcccCC--HHHHHHHHHHhhcc---ceEEEecCCCcccc
Confidence 9999999999998 88888888887765 78999999999874
No 329
>PRK02888 nitrous-oxide reductase; Validated
Probab=97.61 E-value=0.014 Score=66.49 Aligned_cols=213 Identities=11% Similarity=0.052 Sum_probs=108.3
Q ss_pred ccceEec-----cCCCeEEEEEeeccccCCCCcceEEEEECCCCceeecccCCCccccccccceEE--ecCCeEEEEEec
Q 002209 191 LNFVTWS-----QDGKHLAFSIRIDAEDSSSSKLRVWVADVDTGKARPLFQSPDIYLNAIFDNFVW--VNNSTLLVCTIP 263 (953)
Q Consensus 191 ~~~~~wS-----PDG~~laf~~~~~~~~~~~~~~~l~~~d~~~g~~~~lt~~~~~~~~~~~~~~~w--spDg~~l~~~~~ 263 (953)
..+|..| -||++|.. . +..+.+|-+++++.-+..+++..|+... +....+ .|+-.+++....
T Consensus 127 ~HHp~~s~t~g~ydGr~~fi-n-------dk~n~Rvari~l~~~~~~~i~~iPn~~~---~Hg~~~~~~p~t~yv~~~~e 195 (635)
T PRK02888 127 THHPHMSFTDGTYDGRYLFI-N-------DKANTRVARIRLDVMKCDKITELPNVQG---IHGLRPQKIPRTGYVFCNGE 195 (635)
T ss_pred cCCCcccccCCccceeEEEE-e-------cCCCcceEEEECccEeeceeEeCCCccC---ccccCccccCCccEEEeCcc
Confidence 4455555 48887655 3 3347889999999888888877676321 222222 366666664410
Q ss_pred CCCCCCCCCCCCCCCCceeecCCCccccchhhhhhcCCcchhhhhhhhccceEEEEEc-CCc-eeEeCCCCcccccccCC
Q 002209 264 LLRGDPPKKPLVPLGPKMQSNEKRDIIQVRTFQDLLKDEYDEDLFDYYATTQLVLVSL-DGT-VKEIGPPAVYTSLDPSP 341 (953)
Q Consensus 264 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~l~~~~~-~g~-~~~l~~~~~~~~~~~Sp 341 (953)
- . .|..+.|-.+.. ..+ ..+.+..+|. +-+ ..++.-++.....+++|
T Consensus 196 ~---~---~PlpnDGk~l~~----------------~~e---------y~~~vSvID~etmeV~~qV~Vdgnpd~v~~sp 244 (635)
T PRK02888 196 F---R---IPLPNDGKDLDD----------------PKK---------YRSLFTAVDAETMEVAWQVMVDGNLDNVDTDY 244 (635)
T ss_pred c---c---cccCCCCCEeec----------------ccc---------eeEEEEEEECccceEEEEEEeCCCcccceECC
Confidence 0 0 000001100000 000 2234556666 432 23333335667789999
Q ss_pred CCcEEEEEEecCCccccccCCCCCcceEEEeccCceEEEeccCCCcccCCccccccccCccceeeccCCCCceEEEEecc
Q 002209 342 DEKYILISSIHRPYSFIVPCGRFPRQVGVWTTDGIFVRELCDLPLAEDIPIAFNSVRKGMRSINWRSDKPSTLYWAETQD 421 (953)
Q Consensus 342 DG~~l~~~~~~~~~~~~~~~~~~~~~i~~~d~~g~~~~~l~~~~~~~~~p~~~~~~~~~~~~~~wspDg~~i~~~~~~~~ 421 (953)
||+++++++...+. ...+...+..........+.. +.-++.+||+...+.
T Consensus 245 dGk~afvTsyNsE~---------G~tl~em~a~e~d~~vvfni~----------------~iea~vkdGK~~~V~----- 294 (635)
T PRK02888 245 DGKYAFSTCYNSEE---------GVTLAEMMAAERDWVVVFNIA----------------RIEEAVKAGKFKTIG----- 294 (635)
T ss_pred CCCEEEEeccCccc---------CcceeeeccccCceEEEEchH----------------HHHHhhhCCCEEEEC-----
Confidence 99999888733211 113333333221111111100 112466788743321
Q ss_pred CCCcccccccCCeEEEEecCCCC----CCCceEEeecccccCCeeeccCCceEEEEEecccCceEEEEEcCCC
Q 002209 422 GGDAKVEVTPRDIIYTQQAEPVQ----GEGPEILHKLDLRYGGISWCDDSLALVYESWYKTRRTRTWVISPGS 490 (953)
Q Consensus 422 ~~~~~~~~~~~~~l~~~d~~~~~----g~~~~~l~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~l~~~d~~~ 490 (953)
.+.|-++|. .+ +.+...........-++.+||||++++.+..... .+-++|.+.
T Consensus 295 ----------gn~V~VID~--~t~~~~~~~v~~yIPVGKsPHGV~vSPDGkylyVanklS~---tVSVIDv~k 352 (635)
T PRK02888 295 ----------GSKVPVVDG--RKAANAGSALTRYVPVPKNPHGVNTSPDGKYFIANGKLSP---TVTVIDVRK 352 (635)
T ss_pred ----------CCEEEEEEC--CccccCCcceEEEEECCCCccceEECCCCCEEEEeCCCCC---cEEEEEChh
Confidence 346788885 22 1222232333445567899999999988754332 466777665
No 330
>COG3243 PhaC Poly(3-hydroxyalkanoate) synthetase [Lipid metabolism]
Probab=97.61 E-value=0.0012 Score=70.71 Aligned_cols=88 Identities=14% Similarity=0.066 Sum_probs=62.5
Q ss_pred hHHHHHHHcCcEEEEcCCCCCCCCCChhhhhhhHHHHHHHHHHHHHHHHHcCCCCCCcEEEEEeChHHHHHHHHHHhCCC
Q 002209 703 TSVLLWLARGFAILGGPTTPIIGEGDEEANDRFVEQLVACAEAAVEEVVRRGVAHPSKIAVGGHSYGAFMTANLLAHAPH 782 (953)
Q Consensus 703 ~~~~~la~~G~~V~~~~~~~~~G~G~~~~~~~~~~~~~~D~~~~~~~l~~~~~~d~~~i~l~G~S~GG~~a~~~a~~~p~ 782 (953)
.....++++|..|+..+- .+-........+-....+++..+++.+++.-. .++|-++|+|.||.+...+++..+.
T Consensus 130 s~V~~l~~~g~~vfvIsw---~nPd~~~~~~~~edYi~e~l~~aid~v~~itg--~~~InliGyCvGGtl~~~ala~~~~ 204 (445)
T COG3243 130 SLVRWLLEQGLDVFVISW---RNPDASLAAKNLEDYILEGLSEAIDTVKDITG--QKDINLIGYCVGGTLLAAALALMAA 204 (445)
T ss_pred cHHHHHHHcCCceEEEec---cCchHhhhhccHHHHHHHHHHHHHHHHHHHhC--ccccceeeEecchHHHHHHHHhhhh
Confidence 356678899999998433 22222333334444555888888988887632 3689999999999999999998887
Q ss_pred c-ccEEEEcccCCC
Q 002209 783 L-FCCGIARSGAYN 795 (953)
Q Consensus 783 ~-~~a~v~~~~~~d 795 (953)
+ ++.+.......|
T Consensus 205 k~I~S~T~lts~~D 218 (445)
T COG3243 205 KRIKSLTLLTSPVD 218 (445)
T ss_pred cccccceeeecchh
Confidence 6 777776655444
No 331
>PF04762 IKI3: IKI3 family; InterPro: IPR006849 Members of this family are components of the elongator multi-subunit component of a novel RNA polymerase II holoenzyme for transcriptional elongation [].
Probab=97.61 E-value=0.08 Score=65.51 Aligned_cols=110 Identities=17% Similarity=0.206 Sum_probs=60.7
Q ss_pred CccceeeccCCCCceEEEE-eccCCCcccccccCCeEEEEecCCCCCCCceEEe-ecccccCCeeeccCCceEEEEEecc
Q 002209 400 GMRSINWRSDKPSTLYWAE-TQDGGDAKVEVTPRDIIYTQQAEPVQGEGPEILH-KLDLRYGGISWCDDSLALVYESWYK 477 (953)
Q Consensus 400 ~~~~~~wspDg~~i~~~~~-~~~~~~~~~~~~~~~~l~~~d~~~~~g~~~~~l~-~~~~~~~~~~~SpDg~~l~~~~~~~ 477 (953)
+...++|..||+.++...- ... +.+..+.+|+- +| +..-.. .-++-...++|-|.|..|+......
T Consensus 211 ~~~~ISWRGDG~yFAVss~~~~~--------~~~R~iRVy~R---eG-~L~stSE~v~gLe~~l~WrPsG~lIA~~q~~~ 278 (928)
T PF04762_consen 211 GRVRISWRGDGEYFAVSSVEPET--------GSRRVIRVYSR---EG-ELQSTSEPVDGLEGALSWRPSGNLIASSQRLP 278 (928)
T ss_pred CceEEEECCCCcEEEEEEEEcCC--------CceeEEEEECC---Cc-eEEeccccCCCccCCccCCCCCCEEEEEEEcC
Confidence 4456999999997665521 111 12456777773 32 221111 1123334689999999988876533
Q ss_pred cCceEEEEEcCCCCCCCcEEe-ecCCCccccCCCCCCCeEeccCCCEEEEEe
Q 002209 478 TRRTRTWVISPGSKDVAPRIL-FDRSSEDVYSDPGSPMMRRTSTGTYVIAKI 528 (953)
Q Consensus 478 ~~~~~l~~~d~~~~~~~~~~~-~~~~~~~~~~~~~~p~~~~SpDG~~l~~~~ 528 (953)
....+..+..+|-....-.+ .+.....+.. +.|++|+..|+...
T Consensus 279 -~~~~VvFfErNGLrhgeF~l~~~~~~~~v~~------l~Wn~ds~iLAv~~ 323 (928)
T PF04762_consen 279 -DRHDVVFFERNGLRHGEFTLRFDPEEEKVIE------LAWNSDSEILAVWL 323 (928)
T ss_pred -CCcEEEEEecCCcEeeeEecCCCCCCceeeE------EEECCCCCEEEEEe
Confidence 33466666655521000111 1111112222 89999999999876
No 332
>KOG1445 consensus Tumor-specific antigen (contains WD repeats) [Cytoskeleton]
Probab=97.60 E-value=0.0012 Score=72.36 Aligned_cols=157 Identities=15% Similarity=0.152 Sum_probs=91.7
Q ss_pred CCcccccccCC-CCcEEEEEEecCCccccccCCCCCcceEEEeccCceEEEeccCCCcccCCccccccccCccceeeccC
Q 002209 331 PAVYTSLDPSP-DEKYILISSIHRPYSFIVPCGRFPRQVGVWTTDGIFVRELCDLPLAEDIPIAFNSVRKGMRSINWRSD 409 (953)
Q Consensus 331 ~~~~~~~~~Sp-DG~~l~~~~~~~~~~~~~~~~~~~~~i~~~d~~g~~~~~l~~~~~~~~~p~~~~~~~~~~~~~~wspD 409 (953)
+..++.+.|.| |-.+||+...+. .|.+|.+..+...+....+... .......+.++.|.|=
T Consensus 627 gt~vtDl~WdPFD~~rLAVa~ddg-------------~i~lWr~~a~gl~e~~~tPe~~-----lt~h~eKI~slRfHPL 688 (1012)
T KOG1445|consen 627 GTLVTDLHWDPFDDERLAVATDDG-------------QINLWRLTANGLPENEMTPEKI-----LTIHGEKITSLRFHPL 688 (1012)
T ss_pred CceeeecccCCCChHHeeecccCc-------------eEEEEEeccCCCCcccCCccee-----eecccceEEEEEecch
Confidence 35678899999 888999887554 7888877633222211111100 0011123456777763
Q ss_pred CCCceEEEEeccCCCcccccccCCeEEEEecCCCCCCCceEEeecccccCCeeeccCCceEEEEEecccCceEEEEEcCC
Q 002209 410 KPSTLYWAETQDGGDAKVEVTPRDIIYTQQAEPVQGEGPEILHKLDLRYGGISWCDDSLALVYESWYKTRRTRTWVISPG 489 (953)
Q Consensus 410 g~~i~~~~~~~~~~~~~~~~~~~~~l~~~d~~~~~g~~~~~l~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~l~~~d~~ 489 (953)
-.-++. ..+....|.+||+ .++.....+.++...+.+++|||||++++....++ +|.++++.
T Consensus 689 AadvLa------------~asyd~Ti~lWDl--~~~~~~~~l~gHtdqIf~~AWSpdGr~~AtVcKDg----~~rVy~Pr 750 (1012)
T KOG1445|consen 689 AADVLA------------VASYDSTIELWDL--ANAKLYSRLVGHTDQIFGIAWSPDGRRIATVCKDG----TLRVYEPR 750 (1012)
T ss_pred hhhHhh------------hhhccceeeeeeh--hhhhhhheeccCcCceeEEEECCCCcceeeeecCc----eEEEeCCC
Confidence 221111 1234557889997 44445556778888889999999999999886554 68888877
Q ss_pred CCCCCcEEeecCCCccccCCCCCCCeEeccCCCEEEEEee
Q 002209 490 SKDVAPRILFDRSSEDVYSDPGSPMMRRTSTGTYVIAKIK 529 (953)
Q Consensus 490 ~~~~~~~~~~~~~~~~~~~~~~~p~~~~SpDG~~l~~~~~ 529 (953)
.++ ++ +.+.... .+..+. .+.|.-||+.|+....
T Consensus 751 s~e-~p--v~Eg~gp--vgtRgA-Ri~wacdgr~viv~Gf 784 (1012)
T KOG1445|consen 751 SRE-QP--VYEGKGP--VGTRGA-RILWACDGRIVIVVGF 784 (1012)
T ss_pred CCC-Cc--cccCCCC--ccCcce-eEEEEecCcEEEEecc
Confidence 752 22 2222111 011111 2667778887776653
No 333
>KOG0313 consensus Microtubule binding protein YTM1 (contains WD40 repeats) [Cytoskeleton]
Probab=97.59 E-value=0.0083 Score=62.45 Aligned_cols=249 Identities=15% Similarity=0.135 Sum_probs=141.5
Q ss_pred eeeeecCCCCCcccceEeccCCCeEEEEEeeccccCCCCcceEEEEECCCCceeecccCCCccccccccceEEe-cCCe-
Q 002209 179 EIEIQGFPDGAKLNFVTWSQDGKHLAFSIRIDAEDSSSSKLRVWVADVDTGKARPLFQSPDIYLNAIFDNFVWV-NNST- 256 (953)
Q Consensus 179 ~~~l~~~~~~~~~~~~~wSPDG~~laf~~~~~~~~~~~~~~~l~~~d~~~g~~~~lt~~~~~~~~~~~~~~~ws-pDg~- 256 (953)
+..+..+-+..+++.+.-+ +++|+... +...+.+++..|....++..+.+. +..++|- +|..
T Consensus 96 P~pl~~~~hdDWVSsv~~~--~~~Iltgs---------YDg~~riWd~~Gk~~~~~~Ght~~-----ik~v~~v~~n~~~ 159 (423)
T KOG0313|consen 96 PKPLQCFLHDDWVSSVKGA--SKWILTGS---------YDGTSRIWDLKGKSIKTIVGHTGP-----IKSVAWVIKNSSS 159 (423)
T ss_pred CCccccccchhhhhhhccc--CceEEEee---------cCCeeEEEecCCceEEEEecCCcc-----eeeeEEEecCCcc
Confidence 3334334444567777766 78998744 466778888887766666655543 6678886 3332
Q ss_pred EEEEEecCCCCCCCCCCCCCCCCceeecCCCccccchhhhhhcCCcchhhhhhhhccceEEEEEc-CCcee--EeC-CC-
Q 002209 257 LLVCTIPLLRGDPPKKPLVPLGPKMQSNEKRDIIQVRTFQDLLKDEYDEDLFDYYATTQLVLVSL-DGTVK--EIG-PP- 331 (953)
Q Consensus 257 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~l~~~~~-~g~~~--~l~-~~- 331 (953)
..++++ ..| .+-.||.++. .-..+ ... ..
T Consensus 160 ~~fvsa---------------------------------------s~D-------qtl~Lw~~~~~~~~~~~~~~~~GHk 193 (423)
T KOG0313|consen 160 CLFVSA---------------------------------------SMD-------QTLRLWKWNVGENKVKALKVCRGHK 193 (423)
T ss_pred ceEEEe---------------------------------------cCC-------ceEEEEEecCchhhhhHHhHhcccc
Confidence 233220 111 2345666665 22221 111 22
Q ss_pred CcccccccCCCCcEEEEEEecCCccccccCCCCCcceEEEeccCceEEEecc------------CCCcccCCc-cccccc
Q 002209 332 AVYTSLDPSPDEKYILISSIHRPYSFIVPCGRFPRQVGVWTTDGIFVRELCD------------LPLAEDIPI-AFNSVR 398 (953)
Q Consensus 332 ~~~~~~~~SpDG~~l~~~~~~~~~~~~~~~~~~~~~i~~~d~~g~~~~~l~~------------~~~~~~~p~-~~~~~~ 398 (953)
..+.+++..+||.+++-.+.+. .|-+|+....+...+.. .......|. ...++.
T Consensus 194 ~~V~sVsv~~sgtr~~SgS~D~-------------~lkiWs~~~~~~~~~E~~s~~rrk~~~~~~~~~~r~P~vtl~GHt 260 (423)
T KOG0313|consen 194 RSVDSVSVDSSGTRFCSGSWDT-------------MLKIWSVETDEEDELESSSNRRRKKQKREKEGGTRTPLVTLEGHT 260 (423)
T ss_pred cceeEEEecCCCCeEEeecccc-------------eeeecccCCCccccccccchhhhhhhhhhhcccccCceEEecccc
Confidence 7788899999999988887544 77788743221111111 011111222 334555
Q ss_pred cCccceeeccCCCCceEEEEeccCCCcccccccCCeEEEEecCCCCCCCceEEeecccccCCeeeccCCceEEEEEeccc
Q 002209 399 KGMRSINWRSDKPSTLYWAETQDGGDAKVEVTPRDIIYTQQAEPVQGEGPEILHKLDLRYGGISWCDDSLALVYESWYKT 478 (953)
Q Consensus 399 ~~~~~~~wspDg~~i~~~~~~~~~~~~~~~~~~~~~l~~~d~~~~~g~~~~~l~~~~~~~~~~~~SpDg~~l~~~~~~~~ 478 (953)
.-+.++.|++ ...+|.. +-...|.+||+ ..++....++ .......+..+|..+.|+.++.+.
T Consensus 261 ~~Vs~V~w~d--~~v~yS~------------SwDHTIk~WDl--etg~~~~~~~-~~ksl~~i~~~~~~~Ll~~gssdr- 322 (423)
T KOG0313|consen 261 EPVSSVVWSD--ATVIYSV------------SWDHTIKVWDL--ETGGLKSTLT-TNKSLNCISYSPLSKLLASGSSDR- 322 (423)
T ss_pred cceeeEEEcC--CCceEee------------cccceEEEEEe--ecccceeeee-cCcceeEeecccccceeeecCCCC-
Confidence 5667899988 3355551 33457889997 3444443443 334466788999888888776543
Q ss_pred CceEEEEEcCCCCCCCcEEe-ecCCCccccCCCCCCCeEeccCCCEEEEEee
Q 002209 479 RRTRTWVISPGSKDVAPRIL-FDRSSEDVYSDPGSPMMRRTSTGTYVIAKIK 529 (953)
Q Consensus 479 ~~~~l~~~d~~~~~~~~~~~-~~~~~~~~~~~~~~p~~~~SpDG~~l~~~~~ 529 (953)
.|.+.|+.++.+..... +-.+...+.+ +.|+|-..+++....
T Consensus 323 ---~irl~DPR~~~gs~v~~s~~gH~nwVss------vkwsp~~~~~~~S~S 365 (423)
T KOG0313|consen 323 ---HIRLWDPRTGDGSVVSQSLIGHKNWVSS------VKWSPTNEFQLVSGS 365 (423)
T ss_pred ---ceeecCCCCCCCceeEEeeecchhhhhh------eecCCCCceEEEEEe
Confidence 56677887765443332 2222223333 779999888776653
No 334
>KOG0294 consensus WD40 repeat-containing protein [Function unknown]
Probab=97.59 E-value=0.0053 Score=62.34 Aligned_cols=215 Identities=13% Similarity=0.077 Sum_probs=114.8
Q ss_pred ceEEEEccCCCCCCceeeeecCCCCCcccceEeccCCC--eEEEEEeeccccCCCCcceEEEEECCCCceeecccCCCcc
Q 002209 164 GIGIHQLFPDGKLGQEIEIQGFPDGAKLNFVTWSQDGK--HLAFSIRIDAEDSSSSKLRVWVADVDTGKARPLFQSPDIY 241 (953)
Q Consensus 164 ~i~i~~~~~~g~~~~~~~l~~~~~~~~~~~~~wSPDG~--~laf~~~~~~~~~~~~~~~l~~~d~~~g~~~~lt~~~~~~ 241 (953)
.|.|+|+... .+...|. ...+.++...|.|+-. +|+-.+ ++..|-++++..=+...-...
T Consensus 64 tI~IYDm~k~---~qlg~ll--~HagsitaL~F~~~~S~shLlS~s---------dDG~i~iw~~~~W~~~~slK~---- 125 (362)
T KOG0294|consen 64 TIHIYDMRKR---KQLGILL--SHAGSITALKFYPPLSKSHLLSGS---------DDGHIIIWRVGSWELLKSLKA---- 125 (362)
T ss_pred cEEEEeccch---hhhccee--ccccceEEEEecCCcchhheeeec---------CCCcEEEEEcCCeEEeeeecc----
Confidence 6899998431 1111222 1224788889998875 777644 255666666443222111111
Q ss_pred ccccccceEEecCCeEEEEEecCCCCCCCCCCCCCCCCceeecCCCccccchhhhhhcCCcchhhhhhhhccceEEEEEc
Q 002209 242 LNAIFDNFVWVNNSTLLVCTIPLLRGDPPKKPLVPLGPKMQSNEKRDIIQVRTFQDLLKDEYDEDLFDYYATTQLVLVSL 321 (953)
Q Consensus 242 ~~~~~~~~~wspDg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~l~~~~~ 321 (953)
..+.+..++..|-|+.-... ++...|..+|+
T Consensus 126 H~~~Vt~lsiHPS~KLALsV-------------------------------------------------g~D~~lr~WNL 156 (362)
T KOG0294|consen 126 HKGQVTDLSIHPSGKLALSV-------------------------------------------------GGDQVLRTWNL 156 (362)
T ss_pred cccccceeEecCCCceEEEE-------------------------------------------------cCCceeeeehh
Confidence 12227788889999765543 02234556777
Q ss_pred -CCceeEeCCC-CcccccccCCCCcEEEEEEecCCccccccCCCCCcceEEEeccC-ceEEEeccCCCcccCCccccccc
Q 002209 322 -DGTVKEIGPP-AVYTSLDPSPDEKYILISSIHRPYSFIVPCGRFPRQVGVWTTDG-IFVRELCDLPLAEDIPIAFNSVR 398 (953)
Q Consensus 322 -~g~~~~l~~~-~~~~~~~~SpDG~~l~~~~~~~~~~~~~~~~~~~~~i~~~d~~g-~~~~~l~~~~~~~~~p~~~~~~~ 398 (953)
.|+.-.+.+- ...+.+.|+|.|.+.++...+ .|-+|.++. +-.+.+....
T Consensus 157 V~Gr~a~v~~L~~~at~v~w~~~Gd~F~v~~~~--------------~i~i~q~d~A~v~~~i~~~~------------- 209 (362)
T KOG0294|consen 157 VRGRVAFVLNLKNKATLVSWSPQGDHFVVSGRN--------------KIDIYQLDNASVFREIENPK------------- 209 (362)
T ss_pred hcCccceeeccCCcceeeEEcCCCCEEEEEecc--------------EEEEEecccHhHhhhhhccc-------------
Confidence 7754443332 344568999999988877622 566776663 2222222210
Q ss_pred cCccceeeccCCCCceEEEEeccCCCcccccccCCeEEEEecCCCCCCCceEEeecccccCCee-e-ccCCceEEEEEec
Q 002209 399 KGMRSINWRSDKPSTLYWAETQDGGDAKVEVTPRDIIYTQQAEPVQGEGPEILHKLDLRYGGIS-W-CDDSLALVYESWY 476 (953)
Q Consensus 399 ~~~~~~~wspDg~~i~~~~~~~~~~~~~~~~~~~~~l~~~d~~~~~g~~~~~l~~~~~~~~~~~-~-SpDg~~l~~~~~~ 476 (953)
....+.|- ++..++.. .....+-++|- .+......+..+..++..+. + .|++.+|+.++.+
T Consensus 210 -r~l~~~~l-~~~~L~vG-------------~d~~~i~~~D~--ds~~~~~~~~AH~~RVK~i~~~~~~~~~~lvTaSSD 272 (362)
T KOG0294|consen 210 -RILCATFL-DGSELLVG-------------GDNEWISLKDT--DSDTPLTEFLAHENRVKDIASYTNPEHEYLVTASSD 272 (362)
T ss_pred -cceeeeec-CCceEEEe-------------cCCceEEEecc--CCCccceeeecchhheeeeEEEecCCceEEEEeccC
Confidence 00011121 12222221 11234556662 12223344566777776655 2 4678888877665
Q ss_pred ccCceEEEEEcCCCC
Q 002209 477 KTRRTRTWVISPGSK 491 (953)
Q Consensus 477 ~~~~~~l~~~d~~~~ 491 (953)
+ ...+|.++.++.
T Consensus 273 G--~I~vWd~~~~~k 285 (362)
T KOG0294|consen 273 G--FIKVWDIDMETK 285 (362)
T ss_pred c--eEEEEEcccccc
Confidence 4 348888888764
No 335
>KOG1007 consensus WD repeat protein TSSC1, WD repeat superfamily [Function unknown]
Probab=97.59 E-value=0.0027 Score=63.54 Aligned_cols=113 Identities=19% Similarity=0.304 Sum_probs=73.9
Q ss_pred cccceEeccCCCeEEEEEeeccccCCCCcceEEEEECCCCce--eecccCCCccccccccceEEec--CCeEEEEEecCC
Q 002209 190 KLNFVTWSQDGKHLAFSIRIDAEDSSSSKLRVWVADVDTGKA--RPLFQSPDIYLNAIFDNFVWVN--NSTLLVCTIPLL 265 (953)
Q Consensus 190 ~~~~~~wSPDG~~laf~~~~~~~~~~~~~~~l~~~d~~~g~~--~~lt~~~~~~~~~~~~~~~wsp--Dg~~l~~~~~~~ 265 (953)
.+..+.|-||++.|+-.. ..+|-+++++.+.. ..+...........+.+.+||| ||..++.+
T Consensus 125 ~i~cvew~Pns~klasm~----------dn~i~l~~l~ess~~vaev~ss~s~e~~~~ftsg~WspHHdgnqv~tt---- 190 (370)
T KOG1007|consen 125 KINCVEWEPNSDKLASMD----------DNNIVLWSLDESSKIVAEVLSSESAEMRHSFTSGAWSPHHDGNQVATT---- 190 (370)
T ss_pred ceeeEEEcCCCCeeEEec----------cCceEEEEcccCcchheeecccccccccceecccccCCCCccceEEEe----
Confidence 678899999999999865 44666666665433 2222222111122255788997 88888866
Q ss_pred CCCCCCCCCCCCCCceeecCCCccccchhhhhhcCCcchhhhhhhhccceEEEEEc-CC-ceeEeCCC--CcccccccCC
Q 002209 266 RGDPPKKPLVPLGPKMQSNEKRDIIQVRTFQDLLKDEYDEDLFDYYATTQLVLVSL-DG-TVKEIGPP--AVYTSLDPSP 341 (953)
Q Consensus 266 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~l~~~~~-~g-~~~~l~~~--~~~~~~~~Sp 341 (953)
+.+.|+-+|+ +- +...|... ..+.++.|.|
T Consensus 191 ----------------------------------------------~d~tl~~~D~RT~~~~~sI~dAHgq~vrdlDfNp 224 (370)
T KOG1007|consen 191 ----------------------------------------------SDSTLQFWDLRTMKKNNSIEDAHGQRVRDLDFNP 224 (370)
T ss_pred ----------------------------------------------CCCcEEEEEccchhhhcchhhhhcceeeeccCCC
Confidence 3356667776 32 33333332 4578899999
Q ss_pred CCcEEEEEEecCCccccccCCCCCcceEEEecc
Q 002209 342 DEKYILISSIHRPYSFIVPCGRFPRQVGVWTTD 374 (953)
Q Consensus 342 DG~~l~~~~~~~~~~~~~~~~~~~~~i~~~d~~ 374 (953)
+-++++++..+. +.|.+||..
T Consensus 225 nkq~~lvt~gDd------------gyvriWD~R 245 (370)
T KOG1007|consen 225 NKQHILVTCGDD------------GYVRIWDTR 245 (370)
T ss_pred CceEEEEEcCCC------------ccEEEEecc
Confidence 999999887553 478899986
No 336
>KOG0299 consensus U3 snoRNP-associated protein (contains WD40 repeats) [RNA processing and modification]
Probab=97.57 E-value=0.0098 Score=63.48 Aligned_cols=59 Identities=20% Similarity=0.201 Sum_probs=40.3
Q ss_pred cccceEeccCCCeEEEEEeeccccCCCCcceEEEEECCCCceeecccCCCccccccccceEEecCCeEEEEE
Q 002209 190 KLNFVTWSQDGKHLAFSIRIDAEDSSSSKLRVWVADVDTGKARPLFQSPDIYLNAIFDNFVWVNNSTLLVCT 261 (953)
Q Consensus 190 ~~~~~~wSPDG~~laf~~~~~~~~~~~~~~~l~~~d~~~g~~~~lt~~~~~~~~~~~~~~~wspDg~~l~~~ 261 (953)
.+...+.||||++||+. .....|-+++.++.+.++.+...-.. +.+++|-..-..+|..
T Consensus 204 eil~~avS~Dgkylatg---------g~d~~v~Iw~~~t~ehv~~~~ghr~~----V~~L~fr~gt~~lys~ 262 (479)
T KOG0299|consen 204 EILTLAVSSDGKYLATG---------GRDRHVQIWDCDTLEHVKVFKGHRGA----VSSLAFRKGTSELYSA 262 (479)
T ss_pred eeEEEEEcCCCcEEEec---------CCCceEEEecCcccchhhcccccccc----eeeeeeecCccceeee
Confidence 56778899999999993 34667778999999887774433322 5666775443445544
No 337
>KOG0307 consensus Vesicle coat complex COPII, subunit SEC31 [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.57 E-value=0.00043 Score=81.57 Aligned_cols=211 Identities=16% Similarity=0.217 Sum_probs=124.3
Q ss_pred CCCCCcccceEeccCCCe----EEEEEeeccccCCCCcceEEEEECCC----CceeecccCCCccccccccceEEecCCe
Q 002209 185 FPDGAKLNFVTWSQDGKH----LAFSIRIDAEDSSSSKLRVWVADVDT----GKARPLFQSPDIYLNAIFDNFVWVNNST 256 (953)
Q Consensus 185 ~~~~~~~~~~~wSPDG~~----laf~~~~~~~~~~~~~~~l~~~d~~~----g~~~~lt~~~~~~~~~~~~~~~wspDg~ 256 (953)
+.....-...+|++-|.. ||- +.+++.|-+++++. ++..-|..... +++.+..+.|.+...
T Consensus 61 ~~s~~rF~kL~W~~~g~~~~GlIaG---------G~edG~I~ly~p~~~~~~~~~~~la~~~~--h~G~V~gLDfN~~q~ 129 (1049)
T KOG0307|consen 61 LQSSNRFNKLAWGSYGSHSHGLIAG---------GLEDGNIVLYDPASIIANASEEVLATKSK--HTGPVLGLDFNPFQG 129 (1049)
T ss_pred ccccccceeeeecccCCCccceeec---------cccCCceEEecchhhccCcchHHHhhhcc--cCCceeeeeccccCC
Confidence 444446788999998887 443 33344555555443 33222322222 334477888988876
Q ss_pred -EEEEEecCCCCCCCCCCCCCCCCceeecCCCccccchhhhhhcCCcchhhhhhhhccceEEEEEcCCceeEeCC----C
Q 002209 257 -LLVCTIPLLRGDPPKKPLVPLGPKMQSNEKRDIIQVRTFQDLLKDEYDEDLFDYYATTQLVLVSLDGTVKEIGP----P 331 (953)
Q Consensus 257 -~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~l~~~~~~g~~~~l~~----~ 331 (953)
+|+.. . ..++|+++|+..-.+..+. .
T Consensus 130 nlLASG----------------------------------------a---------~~geI~iWDlnn~~tP~~~~~~~~ 160 (1049)
T KOG0307|consen 130 NLLASG----------------------------------------A---------DDGEILIWDLNKPETPFTPGSQAP 160 (1049)
T ss_pred ceeecc----------------------------------------C---------CCCcEEEeccCCcCCCCCCCCCCC
Confidence 55532 1 3467889998432222222 1
Q ss_pred -CcccccccCCCCcEEEEEEecCCccccccCCCCCcceEEEeccCce-EEEeccCCCcccCCccccccccCccceeeccC
Q 002209 332 -AVYTSLDPSPDEKYILISSIHRPYSFIVPCGRFPRQVGVWTTDGIF-VRELCDLPLAEDIPIAFNSVRKGMRSINWRSD 409 (953)
Q Consensus 332 -~~~~~~~~SpDG~~l~~~~~~~~~~~~~~~~~~~~~i~~~d~~g~~-~~~l~~~~~~~~~p~~~~~~~~~~~~~~wspD 409 (953)
..+..++|...=.+|+.+... .+.+.+||+..++ +-.+...+.. .....++|.||
T Consensus 161 ~~eI~~lsWNrkvqhILAS~s~------------sg~~~iWDlr~~~pii~ls~~~~~-----------~~~S~l~WhP~ 217 (1049)
T KOG0307|consen 161 PSEIKCLSWNRKVSHILASGSP------------SGRAVIWDLRKKKPIIKLSDTPGR-----------MHCSVLAWHPD 217 (1049)
T ss_pred cccceEeccchhhhHHhhccCC------------CCCceeccccCCCcccccccCCCc-----------cceeeeeeCCC
Confidence 566777787766666555422 2367899998652 2233333211 12357999999
Q ss_pred CCCceEEEEeccCCCcccccccCCeEEEEecCCCCCCCceEEeecccccCCeeeccCCceEEEEEecccCceEEEEEcCC
Q 002209 410 KPSTLYWAETQDGGDAKVEVTPRDIIYTQQAEPVQGEGPEILHKLDLRYGGISWCDDSLALVYESWYKTRRTRTWVISPG 489 (953)
Q Consensus 410 g~~i~~~~~~~~~~~~~~~~~~~~~l~~~d~~~~~g~~~~~l~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~l~~~d~~ 489 (953)
..+-+...... +....|-+||+ .......+.++.+...+-++.|++.+..++.++..++ ++...+.+
T Consensus 218 ~aTql~~As~d---------d~~PviqlWDl-R~assP~k~~~~H~~GilslsWc~~D~~lllSsgkD~---~ii~wN~~ 284 (1049)
T KOG0307|consen 218 HATQLLVASGD---------DSAPVIQLWDL-RFASSPLKILEGHQRGILSLSWCPQDPRLLLSSGKDN---RIICWNPN 284 (1049)
T ss_pred CceeeeeecCC---------CCCceeEeecc-cccCCchhhhcccccceeeeccCCCCchhhhcccCCC---CeeEecCC
Confidence 98765552222 22335677886 2233344556777777888999998877666655442 67788888
Q ss_pred CC
Q 002209 490 SK 491 (953)
Q Consensus 490 ~~ 491 (953)
++
T Consensus 285 tg 286 (1049)
T KOG0307|consen 285 TG 286 (1049)
T ss_pred Cc
Confidence 75
No 338
>COG1506 DAP2 Dipeptidyl aminopeptidases/acylaminoacyl-peptidases [Amino acid transport and metabolism]
Probab=97.56 E-value=0.035 Score=66.28 Aligned_cols=162 Identities=18% Similarity=0.199 Sum_probs=93.9
Q ss_pred hcCCCCCCceecCCCCEEEEEecCCCCCccccccccceeceEEecCCCCCCcceeeeeceEEEEccCCCCCCceeeeecC
Q 002209 106 VDAPPLPALSFSPQRDKILFLKRRALPPLEELARPEEKLAGLRIDGKCNTRSRMSFYTGIGIHQLFPDGKLGQEIEIQGF 185 (953)
Q Consensus 106 ~~~~~~~~~~~SPDG~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~i~~~~~~g~~~~~~~l~~~ 185 (953)
........+.|||||+.++|.... +... ..+|+.++. | .++..
T Consensus 57 ~~~~~~~~~~~spdg~~~~~~~~~-----------------------~~~~------~~l~l~~~~--g------~~~~~ 99 (620)
T COG1506 57 TFGGGVSELRWSPDGSVLAFVSTD-----------------------GGRV------AQLYLVDVG--G------LITKT 99 (620)
T ss_pred ccCCcccccccCCCCCEEEEEecc-----------------------CCCc------ceEEEEecC--C------ceeee
Confidence 334467788999999999999853 1122 267887762 2 12111
Q ss_pred CCCCcccceEeccCCCeEEEEEeecc-c----------------cCC-CCcceEEEEECCCCceeecccCCCcccccccc
Q 002209 186 PDGAKLNFVTWSQDGKHLAFSIRIDA-E----------------DSS-SSKLRVWVADVDTGKARPLFQSPDIYLNAIFD 247 (953)
Q Consensus 186 ~~~~~~~~~~wSPDG~~laf~~~~~~-~----------------~~~-~~~~~l~~~d~~~g~~~~lt~~~~~~~~~~~~ 247 (953)
. ..+..+.|+|+|+.+++...... . ... ....++|++|.++ ....+...... +.
T Consensus 100 ~--~~v~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~l~~~d~~~-~~~~~~~~~~~-----~~ 171 (620)
T COG1506 100 A--FGVSDARWSPDGDRIAFLTAEGASKRDGGDHLFVDRLPVWFDGRGGERSDLYVVDIES-KLIKLGLGNLD-----VV 171 (620)
T ss_pred e--cccccceeCCCCCeEEEEecccccccCCceeeeecccceeecCCCCcccceEEEccCc-ccccccCCCCc-----ee
Confidence 1 35788999999999999321110 0 011 1356677777665 33333222211 33
Q ss_pred ceEEecCCeEEEEEecCCCCCCCCCCCCCCCCceeecCCCccccchhhhhhcCCcchhhhhhhhccceEEEEEc-CCcee
Q 002209 248 NFVWVNNSTLLVCTIPLLRGDPPKKPLVPLGPKMQSNEKRDIIQVRTFQDLLKDEYDEDLFDYYATTQLVLVSL-DGTVK 326 (953)
Q Consensus 248 ~~~wspDg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~l~~~~~-~g~~~ 326 (953)
.+.|.+|++.++........ ++ .......... ++...
T Consensus 172 ~~~~~~~~~~~~~~~~~~~~------------------------------------~~------~~~~~~~~~~~~~~~~ 209 (620)
T COG1506 172 SFATDGDGRLVASIRLDDDA------------------------------------DP------WVTNLYVLIEGNGELE 209 (620)
T ss_pred eeeeCCCCceeEEeeecccc------------------------------------CC------ceEeeEEEecCCCceE
Confidence 55555666666655221110 00 1122333333 67777
Q ss_pred EeCCC-CcccccccCCCCcEEEEEEecCC
Q 002209 327 EIGPP-AVYTSLDPSPDEKYILISSIHRP 354 (953)
Q Consensus 327 ~l~~~-~~~~~~~~SpDG~~l~~~~~~~~ 354 (953)
.++.. .....+.|.+||+.+++.....+
T Consensus 210 ~~~~~~~~~~~~~~~~~gk~~~~~~~~~~ 238 (620)
T COG1506 210 SLTPGEGSISKLAFDADGKSIALLGTESD 238 (620)
T ss_pred EEcCCCceeeeeeeCCCCCeeEEeccCCc
Confidence 77766 67888999999999998886553
No 339
>KOG0268 consensus Sof1-like rRNA processing protein (contains WD40 repeats) [RNA processing and modification]
Probab=97.55 E-value=0.00087 Score=68.99 Aligned_cols=136 Identities=10% Similarity=0.060 Sum_probs=83.7
Q ss_pred cceEEEEEc-CC-ceeEeCCCCcccccccCCCCcEEEEEEecCCccccccCCCCCcceEEEeccCceEEEeccCCCcccC
Q 002209 313 TTQLVLVSL-DG-TVKEIGPPAVYTSLDPSPDEKYILISSIHRPYSFIVPCGRFPRQVGVWTTDGIFVRELCDLPLAEDI 390 (953)
Q Consensus 313 ~~~l~~~~~-~g-~~~~l~~~~~~~~~~~SpDG~~l~~~~~~~~~~~~~~~~~~~~~i~~~d~~g~~~~~l~~~~~~~~~ 390 (953)
...|+++|+ .+ .++.+...-....++|+|.+ ..|+.... ..++|.+|...-. +++..+.
T Consensus 209 DrsIvLyD~R~~~Pl~KVi~~mRTN~IswnPea--fnF~~a~E-----------D~nlY~~DmR~l~-~p~~v~~----- 269 (433)
T KOG0268|consen 209 DRSIVLYDLRQASPLKKVILTMRTNTICWNPEA--FNFVAANE-----------DHNLYTYDMRNLS-RPLNVHK----- 269 (433)
T ss_pred CCceEEEecccCCccceeeeeccccceecCccc--cceeeccc-----------cccceehhhhhhc-ccchhhc-----
Confidence 356889999 55 44555544455678999943 44444221 3378888875211 1111110
Q ss_pred CccccccccCccceeeccCCCCceEEEEeccCCCcccccccCCeEEEEecCCCCCCCceEE--eecccccCCeeeccCCc
Q 002209 391 PIAFNSVRKGMRSINWRSDKPSTLYWAETQDGGDAKVEVTPRDIIYTQQAEPVQGEGPEIL--HKLDLRYGGISWCDDSL 468 (953)
Q Consensus 391 p~~~~~~~~~~~~~~wspDg~~i~~~~~~~~~~~~~~~~~~~~~l~~~d~~~~~g~~~~~l--~~~~~~~~~~~~SpDg~ 468 (953)
+.-..+-++.|||-|+.++-. +-...|.++.+ ..+..+.+ +.--..+.++.||-|.+
T Consensus 270 -----dhvsAV~dVdfsptG~Efvsg-------------syDksIRIf~~---~~~~SRdiYhtkRMq~V~~Vk~S~Dsk 328 (433)
T KOG0268|consen 270 -----DHVSAVMDVDFSPTGQEFVSG-------------SYDKSIRIFPV---NHGHSRDIYHTKRMQHVFCVKYSMDSK 328 (433)
T ss_pred -----ccceeEEEeccCCCcchhccc-------------cccceEEEeec---CCCcchhhhhHhhhheeeEEEEecccc
Confidence 111234578999999987654 33446667764 44555544 44445677899999999
Q ss_pred eEEEEEecccCceEEEEEcCCC
Q 002209 469 ALVYESWYKTRRTRTWVISPGS 490 (953)
Q Consensus 469 ~l~~~~~~~~~~~~l~~~d~~~ 490 (953)
+|+..+++. +.+||...+..
T Consensus 329 yi~SGSdd~--nvRlWka~Ase 348 (433)
T KOG0268|consen 329 YIISGSDDG--NVRLWKAKASE 348 (433)
T ss_pred EEEecCCCc--ceeeeecchhh
Confidence 998877654 45899887654
No 340
>KOG1036 consensus Mitotic spindle checkpoint protein BUB3, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning]
Probab=97.55 E-value=0.03 Score=56.94 Aligned_cols=109 Identities=17% Similarity=0.222 Sum_probs=73.4
Q ss_pred cccceEeccCCCeEEEEEeeccccCCCCcceEEEEECCCCceeecccCCCccccccccceEEecCCeEEEEEecCCCCCC
Q 002209 190 KLNFVTWSQDGKHLAFSIRIDAEDSSSSKLRVWVADVDTGKARPLFQSPDIYLNAIFDNFVWVNNSTLLVCTIPLLRGDP 269 (953)
Q Consensus 190 ~~~~~~wSPDG~~laf~~~~~~~~~~~~~~~l~~~d~~~g~~~~lt~~~~~~~~~~~~~~~wspDg~~l~~~~~~~~~~~ 269 (953)
.++...|||.+..|+..+- ...|.+++....+.+........ +-.++|.++.+ +++..
T Consensus 15 ~IS~v~f~~~~~~LLvssW---------DgslrlYdv~~~~l~~~~~~~~p-----lL~c~F~d~~~-~~~G~------- 72 (323)
T KOG1036|consen 15 GISSVKFSPSSSDLLVSSW---------DGSLRLYDVPANSLKLKFKHGAP-----LLDCAFADEST-IVTGG------- 72 (323)
T ss_pred ceeeEEEcCcCCcEEEEec---------cCcEEEEeccchhhhhheecCCc-----eeeeeccCCce-EEEec-------
Confidence 6899999999998888663 34555566555555555444432 55788877554 44330
Q ss_pred CCCCCCCCCCceeecCCCccccchhhhhhcCCcchhhhhhhhccceEEEEEc-CCceeEeCCC-CcccccccCCCCcEEE
Q 002209 270 PKKPLVPLGPKMQSNEKRDIIQVRTFQDLLKDEYDEDLFDYYATTQLVLVSL-DGTVKEIGPP-AVYTSLDPSPDEKYIL 347 (953)
Q Consensus 270 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~l~~~~~-~g~~~~l~~~-~~~~~~~~SpDG~~l~ 347 (953)
-.++|.++|+ +|+...+..+ ..++.+..++--..++
T Consensus 73 ------------------------------------------~dg~vr~~Dln~~~~~~igth~~~i~ci~~~~~~~~vI 110 (323)
T KOG1036|consen 73 ------------------------------------------LDGQVRRYDLNTGNEDQIGTHDEGIRCIEYSYEVGCVI 110 (323)
T ss_pred ------------------------------------------cCceEEEEEecCCcceeeccCCCceEEEEeeccCCeEE
Confidence 2367889999 8888777766 7788888886444444
Q ss_pred EEEecCCccccccCCCCCcceEEEeccC
Q 002209 348 ISSIHRPYSFIVPCGRFPRQVGVWTTDG 375 (953)
Q Consensus 348 ~~~~~~~~~~~~~~~~~~~~i~~~d~~g 375 (953)
..+ |.+.|.+||...
T Consensus 111 sgs-------------WD~~ik~wD~R~ 125 (323)
T KOG1036|consen 111 SGS-------------WDKTIKFWDPRN 125 (323)
T ss_pred Ecc-------------cCccEEEEeccc
Confidence 444 455899999875
No 341
>KOG0650 consensus WD40 repeat nucleolar protein Bop1, involved in ribosome biogenesis [Translation, ribosomal structure and biogenesis]
Probab=97.54 E-value=0.0013 Score=71.91 Aligned_cols=88 Identities=9% Similarity=0.135 Sum_probs=53.5
Q ss_pred cceEEEEEcCCceeEeC--CC-CcccccccCCCCcEEEEEEecCCccccccCCCCCcceEEEeccCce-EEEeccCCCcc
Q 002209 313 TTQLVLVSLDGTVKEIG--PP-AVYTSLDPSPDEKYILISSIHRPYSFIVPCGRFPRQVGVWTTDGIF-VRELCDLPLAE 388 (953)
Q Consensus 313 ~~~l~~~~~~g~~~~l~--~~-~~~~~~~~SpDG~~l~~~~~~~~~~~~~~~~~~~~~i~~~d~~g~~-~~~l~~~~~~~ 388 (953)
...+++..++....+.. .. +.+..+.|.|---++++++.+ .|.+||+...+ ++.|....
T Consensus 545 ~~~VliHQLSK~~sQ~PF~kskG~vq~v~FHPs~p~lfVaTq~--------------~vRiYdL~kqelvKkL~tg~--- 607 (733)
T KOG0650|consen 545 NKSVLIHQLSKRKSQSPFRKSKGLVQRVKFHPSKPYLFVATQR--------------SVRIYDLSKQELVKKLLTGS--- 607 (733)
T ss_pred cceEEEEecccccccCchhhcCCceeEEEecCCCceEEEEecc--------------ceEEEehhHHHHHHHHhcCC---
Confidence 34566777733222222 22 677888999988888777633 78999997533 22222211
Q ss_pred cCCccccccccCccceeeccCCCCceEEEEeccCCCcccccccCCeEEEEec
Q 002209 389 DIPIAFNSVRKGMRSINWRSDKPSTLYWAETQDGGDAKVEVTPRDIIYTQQA 440 (953)
Q Consensus 389 ~~p~~~~~~~~~~~~~~wspDg~~i~~~~~~~~~~~~~~~~~~~~~l~~~d~ 440 (953)
..+.+++.+|.|..|+.. +....+..+|+
T Consensus 608 ----------kwiS~msihp~GDnli~g-------------s~d~k~~WfDl 636 (733)
T KOG0650|consen 608 ----------KWISSMSIHPNGDNLILG-------------SYDKKMCWFDL 636 (733)
T ss_pred ----------eeeeeeeecCCCCeEEEe-------------cCCCeeEEEEc
Confidence 123467888988887776 33456666665
No 342
>PF11339 DUF3141: Protein of unknown function (DUF3141); InterPro: IPR024501 This family of proteins appears to be predominantly expressed in Proteobacteria. Their function is unknown.
Probab=97.53 E-value=0.0032 Score=69.04 Aligned_cols=49 Identities=16% Similarity=0.243 Sum_probs=40.6
Q ss_pred cCCCCCcEEEEEeCCCCCCCCchHHHHHHH-------HHHHhCCCcEEEEEeCCCCcc
Q 002209 826 ANKLKKPILLVHGEEDNNSGTLTMQSDRFF-------NALKGHGALCRLVILPFESHG 876 (953)
Q Consensus 826 ~~~i~~P~Li~~G~~D~~v~~~~~~~~~~~-------~~l~~~g~~~~~~~~~~~~H~ 876 (953)
+++|++|++++.|..|.+.| ++|+..+. +.++..|..+-+.+-+..||.
T Consensus 293 Lr~Ir~Piivfas~gDnITP--P~QaL~WI~dlY~~~~ei~a~gQ~IVY~~h~~vGHL 348 (581)
T PF11339_consen 293 LRNIRSPIIVFASYGDNITP--PQQALNWIPDLYPDTEEIKAAGQTIVYLLHESVGHL 348 (581)
T ss_pred hhhCCCCEEEEeccCCCCCC--hhHhccchHhhcCCHHHHHhCCCEEEEEecCCCCce
Confidence 46789999999999999988 99986554 456677777888888989995
No 343
>PF06028 DUF915: Alpha/beta hydrolase of unknown function (DUF915); InterPro: IPR010315 This family consists of bacterial proteins of unknown function, which are hydrolase-like.; PDB: 3LP5_A 3FLE_A 3DS8_A.
Probab=97.52 E-value=0.00093 Score=68.92 Aligned_cols=151 Identities=15% Similarity=0.097 Sum_probs=93.8
Q ss_pred HHHHHHHHHHHHHHHHHcCCCCCCcEEEEEeChHHHHHHHHHHhCCC-----cccEEEEcccCCCCCCCCcCcc-----c
Q 002209 736 VEQLVACAEAAVEEVVRRGVAHPSKIAVGGHSYGAFMTANLLAHAPH-----LFCCGIARSGAYNRTLTPFGFQ-----N 805 (953)
Q Consensus 736 ~~~~~~D~~~~~~~l~~~~~~d~~~i~l~G~S~GG~~a~~~a~~~p~-----~~~a~v~~~~~~d~~~~~~~~~-----~ 805 (953)
......-+..++.+|.+++.+ +++-++||||||..++.++..+.. .+...|++++.++......... .
T Consensus 82 ~~~qa~wl~~vl~~L~~~Y~~--~~~N~VGHSmGg~~~~~yl~~~~~~~~~P~l~K~V~Ia~pfng~~~~~~~~~~~~~~ 159 (255)
T PF06028_consen 82 YKKQAKWLKKVLKYLKKKYHF--KKFNLVGHSMGGLSWTYYLENYGNDKNLPKLNKLVTIAGPFNGILGMNDDQNQNDLN 159 (255)
T ss_dssp HHHHHHHHHHHHHHHHHCC----SEEEEEEETHHHHHHHHHHHHCTTGTTS-EEEEEEEES--TTTTTCCSC-TTTT-CS
T ss_pred HHHHHHHHHHHHHHHHHhcCC--CEEeEEEECccHHHHHHHHHHhccCCCCcccceEEEeccccCccccccccchhhhhc
Confidence 344556677888999998776 599999999999999999987532 4788888888887543211000 0
Q ss_pred ccchhhhhHHHHHhcCcccccCCC--CCcEEEEEeC------CCCCCCCchHHHHHHHHHHHhCCCcEEEEEeCC--CCc
Q 002209 806 EDRTLWEATSTYVEMSPFMSANKL--KKPILLVHGE------EDNNSGTLTMQSDRFFNALKGHGALCRLVILPF--ESH 875 (953)
Q Consensus 806 ~~~~~~~~~~~~~~~sp~~~~~~i--~~P~Li~~G~------~D~~v~~~~~~~~~~~~~l~~~g~~~~~~~~~~--~~H 875 (953)
..+ +-.....|...-... -.++ ...+|-|.|. .|.+|| ...++.+...++......+-.++.| +.|
T Consensus 160 ~~g-p~~~~~~y~~l~~~~-~~~~p~~i~VLnI~G~~~~g~~sDG~V~--~~Ss~sl~~L~~~~~~~Y~e~~v~G~~a~H 235 (255)
T PF06028_consen 160 KNG-PKSMTPMYQDLLKNR-RKNFPKNIQVLNIYGDLEDGSNSDGIVP--NASSLSLRYLLKNRAKSYQEKTVTGKDAQH 235 (255)
T ss_dssp TT--BSS--HHHHHHHHTH-GGGSTTT-EEEEEEEESBTTCSBTSSSB--HHHHCTHHHHCTTTSSEEEEEEEESGGGSC
T ss_pred ccC-CcccCHHHHHHHHHH-HhhCCCCeEEEEEecccCCCCCCCeEEe--HHHHHHHHHHhhcccCceEEEEEECCCCcc
Confidence 111 111122222211000 0122 3569999998 899998 8888888888887777777777776 578
Q ss_pred cCCCcccHHHHHHHHHHHH
Q 002209 876 GYAARESIMHVLWETDRWL 894 (953)
Q Consensus 876 ~~~~~~~~~~~~~~i~~fl 894 (953)
.-. .++ ..+.+.|.+||
T Consensus 236 S~L-heN-~~V~~~I~~FL 252 (255)
T PF06028_consen 236 SQL-HEN-PQVDKLIIQFL 252 (255)
T ss_dssp CGG-GCC-HHHHHHHHHHH
T ss_pred ccC-CCC-HHHHHHHHHHh
Confidence 653 233 46667777776
No 344
>COG4947 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=97.50 E-value=0.00026 Score=64.94 Aligned_cols=118 Identities=25% Similarity=0.303 Sum_probs=82.3
Q ss_pred HHHHHHHHcCCCCCCcEEEEEeChHHHHHHHHHHhCCCcccEEEEcccCCCCCCCCcCcccccchhhhhHHHHHhcCccc
Q 002209 745 AAVEEVVRRGVAHPSKIAVGGHSYGAFMTANLLAHAPHLFCCGIARSGAYNRTLTPFGFQNEDRTLWEATSTYVEMSPFM 824 (953)
Q Consensus 745 ~~~~~l~~~~~~d~~~i~l~G~S~GG~~a~~~a~~~p~~~~a~v~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~sp~~ 824 (953)
+.-.|++++. =+.+..+.|.||||+.|+.+..++|++|..+|+.+|++|....--++.+. . .|. .+|.+
T Consensus 89 AyerYv~eEa--lpgs~~~sgcsmGayhA~nfvfrhP~lftkvialSGvYdardffg~yydd-------D-v~y-nsP~d 157 (227)
T COG4947 89 AYERYVIEEA--LPGSTIVSGCSMGAYHAANFVFRHPHLFTKVIALSGVYDARDFFGGYYDD-------D-VYY-NSPSD 157 (227)
T ss_pred HHHHHHHHhh--cCCCccccccchhhhhhhhhheeChhHhhhheeecceeeHHHhccccccC-------c-eee-cChhh
Confidence 3345666542 24568899999999999999999999999999999998854211111111 0 111 45555
Q ss_pred ccCCCCC----------cEEEEEeCCCCCCCCchHHHHHHHHHHHhCCCcEEEEEeCCCCccC
Q 002209 825 SANKLKK----------PILLVHGEEDNNSGTLTMQSDRFFNALKGHGALCRLVILPFESHGY 877 (953)
Q Consensus 825 ~~~~i~~----------P~Li~~G~~D~~v~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~H~~ 877 (953)
++..+.. -+.+..|..|+.. .+..++.+.|.++.++..+.++.+-.|.+
T Consensus 158 ylpg~~dp~~l~rlr~~~~vfc~G~e~~~L----~~~~~L~~~l~dKqipaw~~~WggvaHdw 216 (227)
T COG4947 158 YLPGLADPFRLERLRRIDMVFCIGDEDPFL----DNNQHLSRLLSDKQIPAWMHVWGGVAHDW 216 (227)
T ss_pred hccCCcChHHHHHHhhccEEEEecCccccc----cchHHHHHHhccccccHHHHHhccccccc
Confidence 5555443 3777889988774 46678889998888888887887777765
No 345
>COG3545 Predicted esterase of the alpha/beta hydrolase fold [General function prediction only]
Probab=97.47 E-value=0.0016 Score=61.14 Aligned_cols=119 Identities=14% Similarity=0.082 Sum_probs=80.0
Q ss_pred CCcEEEEEeChHHHHHHHHHHhCCCcccEEEEcccCCCCCCCCcCcccccchhhhhHHHHHhcCcccccCCCCCcEEEEE
Q 002209 758 PSKIAVGGHSYGAFMTANLLAHAPHLFCCGIARSGAYNRTLTPFGFQNEDRTLWEATSTYVEMSPFMSANKLKKPILLVH 837 (953)
Q Consensus 758 ~~~i~l~G~S~GG~~a~~~a~~~p~~~~a~v~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~sp~~~~~~i~~P~Li~~ 837 (953)
++.+.|++||.|..+++..+.+....++++.+++|+--..... .......++|.. ...+.-|.++++
T Consensus 58 ~~~~vlVAHSLGc~~v~h~~~~~~~~V~GalLVAppd~~~~~~------------~~~~~~tf~~~p-~~~lpfps~vva 124 (181)
T COG3545 58 EGPVVLVAHSLGCATVAHWAEHIQRQVAGALLVAPPDVSRPEI------------RPKHLMTFDPIP-REPLPFPSVVVA 124 (181)
T ss_pred CCCeEEEEecccHHHHHHHHHhhhhccceEEEecCCCcccccc------------chhhccccCCCc-cccCCCceeEEE
Confidence 4569999999999999999988766899999999863111000 001111222221 233456899999
Q ss_pred eCCCCCCCCchHHHHHHHHHHHhCCCcEEEEEeCCCCccCC--CcccHHHHHHHHHHHHHH
Q 002209 838 GEEDNNSGTLTMQSDRFFNALKGHGALCRLVILPFESHGYA--ARESIMHVLWETDRWLQK 896 (953)
Q Consensus 838 G~~D~~v~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~H~~~--~~~~~~~~~~~i~~fl~~ 896 (953)
+.+|+.|+ ++++..+.+++.. .++....+||... ......+.+..+.+|+.+
T Consensus 125 SrnDp~~~--~~~a~~~a~~wgs-----~lv~~g~~GHiN~~sG~g~wpeg~~~l~~~~s~ 178 (181)
T COG3545 125 SRNDPYVS--YEHAEDLANAWGS-----ALVDVGEGGHINAESGFGPWPEGYALLAQLLSR 178 (181)
T ss_pred ecCCCCCC--HHHHHHHHHhccH-----hheecccccccchhhcCCCcHHHHHHHHHHhhh
Confidence 99999999 9999999888865 4777888899642 233344555555555443
No 346
>KOG0294 consensus WD40 repeat-containing protein [Function unknown]
Probab=97.46 E-value=0.0067 Score=61.60 Aligned_cols=101 Identities=16% Similarity=0.177 Sum_probs=63.5
Q ss_pred CCCCCCceecCCCC--EEEEEecCCCCCccccccccceeceEEecCCCCCCcceeeeeceEEEEccCCCCCCceeeeecC
Q 002209 108 APPLPALSFSPQRD--KILFLKRRALPPLEELARPEEKLAGLRIDGKCNTRSRMSFYTGIGIHQLFPDGKLGQEIEIQGF 185 (953)
Q Consensus 108 ~~~~~~~~~SPDG~--~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~i~~~~~~g~~~~~~~l~~~ 185 (953)
+..+..+.|+|+-. +|+..+.+ +.|.+|++. .-..+..+
T Consensus 83 agsitaL~F~~~~S~shLlS~sdD---------------------------------G~i~iw~~~------~W~~~~sl 123 (362)
T KOG0294|consen 83 AGSITALKFYPPLSKSHLLSGSDD---------------------------------GHIIIWRVG------SWELLKSL 123 (362)
T ss_pred ccceEEEEecCCcchhheeeecCC---------------------------------CcEEEEEcC------CeEEeeee
Confidence 44567778888775 66666554 367888872 22222222
Q ss_pred C-CCCcccceEeccCCCeEEEEEeeccccCCCCcceEEEEECCCCceeecccCCCccccccccceEEecCCeEEEEE
Q 002209 186 P-DGAKLNFVTWSQDGKHLAFSIRIDAEDSSSSKLRVWVADVDTGKARPLFQSPDIYLNAIFDNFVWVNNSTLLVCT 261 (953)
Q Consensus 186 ~-~~~~~~~~~wSPDG~~laf~~~~~~~~~~~~~~~l~~~d~~~g~~~~lt~~~~~~~~~~~~~~~wspDg~~l~~~ 261 (953)
. +...++..+..|-|+ ||.+.. +...|..|++-.|..-.++..... ...+.|+|.|.++++.
T Consensus 124 K~H~~~Vt~lsiHPS~K-LALsVg--------~D~~lr~WNLV~Gr~a~v~~L~~~-----at~v~w~~~Gd~F~v~ 186 (362)
T KOG0294|consen 124 KAHKGQVTDLSIHPSGK-LALSVG--------GDQVLRTWNLVRGRVAFVLNLKNK-----ATLVSWSPQGDHFVVS 186 (362)
T ss_pred cccccccceeEecCCCc-eEEEEc--------CCceeeeehhhcCccceeeccCCc-----ceeeEEcCCCCEEEEE
Confidence 2 123699999999887 554432 245666777766655444443432 3468999999988876
No 347
>KOG4283 consensus Transcription-coupled repair protein CSA, contains WD40 domain [Transcription; Replication, recombination and repair]
Probab=97.45 E-value=0.029 Score=56.44 Aligned_cols=111 Identities=13% Similarity=0.159 Sum_probs=72.4
Q ss_pred cccceEeccCCCeEEEEEeeccccCCCCcceEEEEECCCCceeecccCCCccccccccceEEecCCe---EEEEEecCCC
Q 002209 190 KLNFVTWSQDGKHLAFSIRIDAEDSSSSKLRVWVADVDTGKARPLFQSPDIYLNAIFDNFVWVNNST---LLVCTIPLLR 266 (953)
Q Consensus 190 ~~~~~~wSPDG~~laf~~~~~~~~~~~~~~~l~~~d~~~g~~~~lt~~~~~~~~~~~~~~~wspDg~---~l~~~~~~~~ 266 (953)
.+....|-|=..-+..++. -...|-+||..+-+....+..++. +.+-+|||=.. .|+..
T Consensus 103 ~iss~~WyP~DtGmFtssS--------FDhtlKVWDtnTlQ~a~~F~me~~-----VYshamSp~a~sHcLiA~g----- 164 (397)
T KOG4283|consen 103 AISSAIWYPIDTGMFTSSS--------FDHTLKVWDTNTLQEAVDFKMEGK-----VYSHAMSPMAMSHCLIAAG----- 164 (397)
T ss_pred eeeeeEEeeecCceeeccc--------ccceEEEeecccceeeEEeecCce-----eehhhcChhhhcceEEEEe-----
Confidence 6777888885555544332 245778888877665544444443 55777887553 23322
Q ss_pred CCCCCCCCCCCCCceeecCCCccccchhhhhhcCCcchhhhhhhhccceEEEEEc-CCceeE-eCCC-CcccccccCCCC
Q 002209 267 GDPPKKPLVPLGPKMQSNEKRDIIQVRTFQDLLKDEYDEDLFDYYATTQLVLVSL-DGTVKE-IGPP-AVYTSLDPSPDE 343 (953)
Q Consensus 267 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~l~~~~~-~g~~~~-l~~~-~~~~~~~~SpDG 343 (953)
+...++.+-|+ +|.-.- |... +++-.+.|||-.
T Consensus 165 --------------------------------------------tr~~~VrLCDi~SGs~sH~LsGHr~~vlaV~Wsp~~ 200 (397)
T KOG4283|consen 165 --------------------------------------------TRDVQVRLCDIASGSFSHTLSGHRDGVLAVEWSPSS 200 (397)
T ss_pred --------------------------------------------cCCCcEEEEeccCCcceeeeccccCceEEEEeccCc
Confidence 02246677888 886544 3444 888999999999
Q ss_pred cEEEEEEecCCccccccCCCCCcceEEEecc
Q 002209 344 KYILISSIHRPYSFIVPCGRFPRQVGVWTTD 374 (953)
Q Consensus 344 ~~l~~~~~~~~~~~~~~~~~~~~~i~~~d~~ 374 (953)
.+++++..- .+.+.+||+.
T Consensus 201 e~vLatgsa------------Dg~irlWDiR 219 (397)
T KOG4283|consen 201 EWVLATGSA------------DGAIRLWDIR 219 (397)
T ss_pred eeEEEecCC------------CceEEEEEee
Confidence 999988632 3588999886
No 348
>KOG1036 consensus Mitotic spindle checkpoint protein BUB3, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning]
Probab=97.44 E-value=0.048 Score=55.56 Aligned_cols=90 Identities=13% Similarity=0.162 Sum_probs=58.0
Q ss_pred CCCCceecCCCCEEEEEecCCCCCccccccccceeceEEecCCCCCCcceeeeeceEEEEccCCCCCCceeeeecCCCCC
Q 002209 110 PLPALSFSPQRDKILFLKRRALPPLEELARPEEKLAGLRIDGKCNTRSRMSFYTGIGIHQLFPDGKLGQEIEIQGFPDGA 189 (953)
Q Consensus 110 ~~~~~~~SPDG~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~i~~~~~~g~~~~~~~l~~~~~~~ 189 (953)
.++.+.|||.+..|+.++.+ +.|.++++... ..+.. +..+.
T Consensus 15 ~IS~v~f~~~~~~LLvssWD---------------------------------gslrlYdv~~~----~l~~~--~~~~~ 55 (323)
T KOG1036|consen 15 GISSVKFSPSSSDLLVSSWD---------------------------------GSLRLYDVPAN----SLKLK--FKHGA 55 (323)
T ss_pred ceeeEEEcCcCCcEEEEecc---------------------------------CcEEEEeccch----hhhhh--eecCC
Confidence 36788999999888888776 36788888432 11111 33334
Q ss_pred cccceEeccCCCeEEEEEeeccccCCCCcceEEEEECCCCceeecccCCCccccccccceEEec
Q 002209 190 KLNFVTWSQDGKHLAFSIRIDAEDSSSSKLRVWVADVDTGKARPLFQSPDIYLNAIFDNFVWVN 253 (953)
Q Consensus 190 ~~~~~~wSPDG~~laf~~~~~~~~~~~~~~~l~~~d~~~g~~~~lt~~~~~~~~~~~~~~~wsp 253 (953)
.+..-.|.+ ..++++ ++-...|.++|+.+++..++-.+.+. +..+..++
T Consensus 56 plL~c~F~d-~~~~~~---------G~~dg~vr~~Dln~~~~~~igth~~~-----i~ci~~~~ 104 (323)
T KOG1036|consen 56 PLLDCAFAD-ESTIVT---------GGLDGQVRRYDLNTGNEDQIGTHDEG-----IRCIEYSY 104 (323)
T ss_pred ceeeeeccC-CceEEE---------eccCceEEEEEecCCcceeeccCCCc-----eEEEEeec
Confidence 455566764 456666 33467899999999988877665543 44555553
No 349
>COG1770 PtrB Protease II [Amino acid transport and metabolism]
Probab=97.44 E-value=0.06 Score=61.18 Aligned_cols=110 Identities=18% Similarity=0.269 Sum_probs=66.1
Q ss_pred CCCCceecCCCCEEEEEecCCCCCccccccccceeceEEecCCCCCCcceeeeeceEEEEccCCCCCCceeeeecCCCCC
Q 002209 110 PLPALSFSPQRDKILFLKRRALPPLEELARPEEKLAGLRIDGKCNTRSRMSFYTGIGIHQLFPDGKLGQEIEIQGFPDGA 189 (953)
Q Consensus 110 ~~~~~~~SPDG~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~i~~~~~~g~~~~~~~l~~~~~~~ 189 (953)
.+...++|||++.+|++.+. .++... .|.+.|+.+ |.. ....++ .
T Consensus 130 ~Lg~~~~s~D~~~la~s~D~----------------------~G~e~y------~lr~kdL~t-g~~-~~d~i~-----~ 174 (682)
T COG1770 130 SLGAASISPDHNLLAYSVDV----------------------LGDEQY------TLRFKDLAT-GEE-LPDEIT-----N 174 (682)
T ss_pred eeeeeeeCCCCceEEEEEec----------------------ccccEE------EEEEEeccc-ccc-cchhhc-----c
Confidence 35678899999999999874 233444 788999865 211 111111 1
Q ss_pred cccceEeccCCCeEEEEEeeccccCCCCcceEEEEECCC--CceeecccCCCccccccccceEEecCCeEEEEE
Q 002209 190 KLNFVTWSQDGKHLAFSIRIDAEDSSSSKLRVWVADVDT--GKARPLFQSPDIYLNAIFDNFVWVNNSTLLVCT 261 (953)
Q Consensus 190 ~~~~~~wSPDG~~laf~~~~~~~~~~~~~~~l~~~d~~~--g~~~~lt~~~~~~~~~~~~~~~wspDg~~l~~~ 261 (953)
......|.+|++.+.|++..+ ..--..||...+.+ .+.+.+...++..+ .-++.=|...+.|++.
T Consensus 175 ~~~~~~Wa~d~~~lfYt~~d~----~~rp~kv~~h~~gt~~~~d~lvyeE~d~~f---~~~v~~s~s~~yi~i~ 241 (682)
T COG1770 175 TSGSFAWAADGKTLFYTRLDE----NHRPDKVWRHRLGTPGSSDELVYEEKDDRF---FLSVGRSRSEAYIVIS 241 (682)
T ss_pred cccceEEecCCCeEEEEEEcC----CCCcceEEEEecCCCCCcceEEEEcCCCcE---EEEeeeccCCceEEEE
Confidence 356789999999999988533 22356788888776 34444443333211 1233344555566654
No 350
>KOG2110 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=97.44 E-value=0.0022 Score=66.47 Aligned_cols=135 Identities=17% Similarity=0.139 Sum_probs=84.2
Q ss_pred eceEEEEccCCCCCCceeeee---cC-CCCCcccceEeccCCCeEEEEEeeccccCCCCcceEEEEECCCCceeecccCC
Q 002209 163 TGIGIHQLFPDGKLGQEIEIQ---GF-PDGAKLNFVTWSQDGKHLAFSIRIDAEDSSSSKLRVWVADVDTGKARPLFQSP 238 (953)
Q Consensus 163 ~~i~i~~~~~~g~~~~~~~l~---~~-~~~~~~~~~~wSPDG~~laf~~~~~~~~~~~~~~~l~~~d~~~g~~~~lt~~~ 238 (953)
..|||+|+++ -+.|. .. +........+.++.+.+|||-..+ ...+|+++|+..-++.-.....
T Consensus 106 e~IyIydI~~------MklLhTI~t~~~n~~gl~AlS~n~~n~ylAyp~s~-------t~GdV~l~d~~nl~~v~~I~aH 172 (391)
T KOG2110|consen 106 ESIYIYDIKD------MKLLHTIETTPPNPKGLCALSPNNANCYLAYPGST-------TSGDVVLFDTINLQPVNTINAH 172 (391)
T ss_pred ccEEEEeccc------ceeehhhhccCCCccceEeeccCCCCceEEecCCC-------CCceEEEEEcccceeeeEEEec
Confidence 5799999953 22222 12 112234555566677799996533 2678888887764433222222
Q ss_pred CccccccccceEEecCCeEEEEEecCCCCCCCCCCCCCCCCceeecCCCccccchhhhhhcCCcchhhhhhhhccceEEE
Q 002209 239 DIYLNAIFDNFVWVNNSTLLVCTIPLLRGDPPKKPLVPLGPKMQSNEKRDIIQVRTFQDLLKDEYDEDLFDYYATTQLVL 318 (953)
Q Consensus 239 ~~~~~~~~~~~~wspDg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~l~~ 318 (953)
.. .+..++|++||..|+.++. ...-|.+
T Consensus 173 ~~----~lAalafs~~G~llATASe------------------------------------------------KGTVIRV 200 (391)
T KOG2110|consen 173 KG----PLAALAFSPDGTLLATASE------------------------------------------------KGTVIRV 200 (391)
T ss_pred CC----ceeEEEECCCCCEEEEecc------------------------------------------------CceEEEE
Confidence 22 2678999999999996611 1123444
Q ss_pred EEc-CC-ceeEeCCC---CcccccccCCCCcEEEEEEecCCccccccCCCCCcceEEEeccC
Q 002209 319 VSL-DG-TVKEIGPP---AVYTSLDPSPDEKYILISSIHRPYSFIVPCGRFPRQVGVWTTDG 375 (953)
Q Consensus 319 ~~~-~g-~~~~l~~~---~~~~~~~~SpDG~~l~~~~~~~~~~~~~~~~~~~~~i~~~d~~g 375 (953)
+.+ +| +...+..+ ..+.+++||||+++|+.+++.. .|.++.++.
T Consensus 201 f~v~~G~kl~eFRRG~~~~~IySL~Fs~ds~~L~~sS~Te-------------TVHiFKL~~ 249 (391)
T KOG2110|consen 201 FSVPEGQKLYEFRRGTYPVSIYSLSFSPDSQFLAASSNTE-------------TVHIFKLEK 249 (391)
T ss_pred EEcCCccEeeeeeCCceeeEEEEEEECCCCCeEEEecCCC-------------eEEEEEecc
Confidence 555 66 33334333 5678999999999999998544 788887763
No 351
>TIGR02171 Fb_sc_TIGR02171 Fibrobacter succinogenes paralogous family TIGR02171. This model describes a paralogous family of the rumen bacterium Fibrobacter succinogenes. Eleven members are found in Fibrobacter succinogenes S85, averaging over 900 amino acids in length. More than half are predicted lipoproteins. The function is unknown.
Probab=97.42 E-value=0.0088 Score=70.46 Aligned_cols=84 Identities=23% Similarity=0.319 Sum_probs=51.9
Q ss_pred ceEEEEccCCCCCCceeeeecCCCCCcccceEeccCCCeEEEEEeeccccCCCCcceEEEEECCCC--ceeecccCCCcc
Q 002209 164 GIGIHQLFPDGKLGQEIEIQGFPDGAKLNFVTWSQDGKHLAFSIRIDAEDSSSSKLRVWVADVDTG--KARPLFQSPDIY 241 (953)
Q Consensus 164 ~i~i~~~~~~g~~~~~~~l~~~~~~~~~~~~~wSPDG~~laf~~~~~~~~~~~~~~~l~~~d~~~g--~~~~lt~~~~~~ 241 (953)
+|.+.|. || ...+.+. +.+...+.+|.|||||++|||+.... .-.+...||+.++++. ...+| +..
T Consensus 330 ~L~~~D~--dG--~n~~~ve-~~~~~~i~sP~~SPDG~~vAY~ts~e---~~~g~s~vYv~~L~t~~~~~vkl---~ve- 397 (912)
T TIGR02171 330 NLAYIDY--TK--GASRAVE-IEDTISVYHPDISPDGKKVAFCTGIE---GLPGKSSVYVRNLNASGSGLVKL---PVE- 397 (912)
T ss_pred eEEEEec--CC--CCceEEE-ecCCCceecCcCCCCCCEEEEEEeec---CCCCCceEEEEehhccCCCceEe---ecc-
Confidence 6788887 55 3444441 22334789999999999999944322 2236788999999863 23344 211
Q ss_pred ccccccceEEe--cCC-eEEEEEe
Q 002209 242 LNAIFDNFVWV--NNS-TLLVCTI 262 (953)
Q Consensus 242 ~~~~~~~~~ws--pDg-~~l~~~~ 262 (953)
+ ...+.|- .+| +.|+|++
T Consensus 398 -~--aaiprwrv~e~gdt~ivyv~ 418 (912)
T TIGR02171 398 -N--AAIPRWRVLENGDTVIVYVS 418 (912)
T ss_pred -c--ccccceEecCCCCeEEEEEc
Confidence 1 2245554 666 5677773
No 352
>KOG1408 consensus WD40 repeat protein [Function unknown]
Probab=97.42 E-value=0.0075 Score=67.50 Aligned_cols=74 Identities=18% Similarity=0.260 Sum_probs=47.4
Q ss_pred eEeccCCCEEEEEeeeccCCCcEEEEecCCCCCCCCCCeEEEEECCCCceEEEeccCcccceeeeEeeccCCcccccccc
Q 002209 515 MRRTSTGTYVIAKIKKENDEGTYILLNGNGATPEGNIPFLDLFDINTGSKERIWESDKEKYYETTVALMSDQTEGDLYLN 594 (953)
Q Consensus 515 ~~~SpDG~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~d~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~s~d 594 (953)
+..-|..++++....++ .|.+||+.+|+.++.+.++-. -+... ....++|.
T Consensus 602 m~Vdp~~k~v~t~cQDr---------------------nirif~i~sgKq~k~FKgs~~--~eG~l------IKv~lDPS 652 (1080)
T KOG1408|consen 602 MAVDPTSKLVVTVCQDR---------------------NIRIFDIESGKQVKSFKGSRD--HEGDL------IKVILDPS 652 (1080)
T ss_pred eeeCCCcceEEEEeccc---------------------ceEEEeccccceeeeeccccc--CCCce------EEEEECCC
Confidence 44566667776665433 399999999999999877632 00000 11356777
Q ss_pred CCEEEEEEecCCCCceEEEEECCCCCe
Q 002209 595 QLKILTSKESKTENTQYYIQSWPDKKS 621 (953)
Q Consensus 595 g~~l~~~~~~~~~p~~l~~~~~~~g~~ 621 (953)
|-+++..++..+ |.++|..+|+.
T Consensus 653 giY~atScsdkt----l~~~Df~sgEc 675 (1080)
T KOG1408|consen 653 GIYLATSCSDKT----LCFVDFVSGEC 675 (1080)
T ss_pred ccEEEEeecCCc----eEEEEeccchh
Confidence 877777666543 77777777753
No 353
>KOG4378 consensus Nuclear protein COP1 [Signal transduction mechanisms]
Probab=97.39 E-value=0.011 Score=63.37 Aligned_cols=145 Identities=16% Similarity=0.155 Sum_probs=89.6
Q ss_pred CcccccccCCCCcEEEEEEecCCccccccCCCCCcceEEEeccCceEE-EeccCCCcccCCccccccccCccceeeccCC
Q 002209 332 AVYTSLDPSPDEKYILISSIHRPYSFIVPCGRFPRQVGVWTTDGIFVR-ELCDLPLAEDIPIAFNSVRKGMRSINWRSDK 410 (953)
Q Consensus 332 ~~~~~~~~SpDG~~l~~~~~~~~~~~~~~~~~~~~~i~~~d~~g~~~~-~l~~~~~~~~~p~~~~~~~~~~~~~~wspDg 410 (953)
..++.+.+.-...+||.++.. ++|.+..+.++... .++...+ ..+|-+.+||-.
T Consensus 122 stvt~v~YN~~DeyiAsvs~g-------------Gdiiih~~~t~~~tt~f~~~sg------------qsvRll~ys~sk 176 (673)
T KOG4378|consen 122 STVTYVDYNNTDEYIASVSDG-------------GDIIIHGTKTKQKTTTFTIDSG------------QSVRLLRYSPSK 176 (673)
T ss_pred ceeEEEEecCCcceeEEeccC-------------CcEEEEecccCccccceecCCC------------CeEEEeeccccc
Confidence 444555555566777777632 37777777644322 2222111 123567888887
Q ss_pred CCceEEEEeccCCCcccccccCCeEEEEecCCCCCCCceE--EeecccccCCeeeccCCceEEEEEecccCceEEEEEcC
Q 002209 411 PSTLYWAETQDGGDAKVEVTPRDIIYTQQAEPVQGEGPEI--LHKLDLRYGGISWCDDSLALVYESWYKTRRTRTWVISP 488 (953)
Q Consensus 411 ~~i~~~~~~~~~~~~~~~~~~~~~l~~~d~~~~~g~~~~~--l~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~l~~~d~ 488 (953)
+.++-. ++..+.+.+||. +|..+.- ...+.....++.|||-...|+.+...+ .+|+++|.
T Consensus 177 r~lL~~------------asd~G~VtlwDv---~g~sp~~~~~~~HsAP~~gicfspsne~l~vsVG~D---kki~~yD~ 238 (673)
T KOG4378|consen 177 RFLLSI------------ASDKGAVTLWDV---QGMSPIFHASEAHSAPCRGICFSPSNEALLVSVGYD---KKINIYDI 238 (673)
T ss_pred ceeeEe------------eccCCeEEEEec---cCCCcccchhhhccCCcCcceecCCccceEEEeccc---ceEEEeec
Confidence 766654 144668899996 5544432 345566678899999988877765444 37888887
Q ss_pred CCCCCCcEEeecCCCccccCCCCCCCeEeccCCCEEEEEe
Q 002209 489 GSKDVAPRILFDRSSEDVYSDPGSPMMRRTSTGTYVIAKI 528 (953)
Q Consensus 489 ~~~~~~~~~~~~~~~~~~~~~~~~p~~~~SpDG~~l~~~~ 528 (953)
.......+...+.+... +.|+++|.+|+...
T Consensus 239 ~s~~s~~~l~y~~Plst---------vaf~~~G~~L~aG~ 269 (673)
T KOG4378|consen 239 RSQASTDRLTYSHPLST---------VAFSECGTYLCAGN 269 (673)
T ss_pred ccccccceeeecCCcce---------eeecCCceEEEeec
Confidence 76433333333333332 78999999888775
No 354
>KOG0316 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=97.38 E-value=0.0054 Score=59.65 Aligned_cols=200 Identities=13% Similarity=0.153 Sum_probs=120.9
Q ss_pred CcccccccCCCCcEEEEEEecCCccccccCCCCCcceEEEeccCc-eEEEeccCCCcccCCccccccccCccceeeccCC
Q 002209 332 AVYTSLDPSPDEKYILISSIHRPYSFIVPCGRFPRQVGVWTTDGI-FVRELCDLPLAEDIPIAFNSVRKGMRSINWRSDK 410 (953)
Q Consensus 332 ~~~~~~~~SpDG~~l~~~~~~~~~~~~~~~~~~~~~i~~~d~~g~-~~~~l~~~~~~~~~p~~~~~~~~~~~~~~wspDg 410 (953)
+.+..+.+.-||++.+....++ .+.+|+.-.+ -++....+. ..+...+-+.|.
T Consensus 18 gaV~avryN~dGnY~ltcGsdr-------------tvrLWNp~rg~liktYsghG-------------~EVlD~~~s~Dn 71 (307)
T KOG0316|consen 18 GAVRAVRYNVDGNYCLTCGSDR-------------TVRLWNPLRGALIKTYSGHG-------------HEVLDAALSSDN 71 (307)
T ss_pred cceEEEEEccCCCEEEEcCCCc-------------eEEeecccccceeeeecCCC-------------ceeeeccccccc
Confidence 4566677888999987666443 8999988644 344433321 223456677777
Q ss_pred CCceEEEEeccCCCcccccccCCeEEEEecCCCCCCCceEEeecccccCCeeeccCCceEEEEEecccCceEEEEEcCCC
Q 002209 411 PSTLYWAETQDGGDAKVEVTPRDIIYTQQAEPVQGEGPEILHKLDLRYGGISWCDDSLALVYESWYKTRRTRTWVISPGS 490 (953)
Q Consensus 411 ~~i~~~~~~~~~~~~~~~~~~~~~l~~~d~~~~~g~~~~~l~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~l~~~d~~~ 490 (953)
..++-- ++...+++||+ .+|...+++-.+.+.++.+.|..+...++..+.+.. .++|--....
T Consensus 72 skf~s~-------------GgDk~v~vwDV--~TGkv~Rr~rgH~aqVNtV~fNeesSVv~SgsfD~s--~r~wDCRS~s 134 (307)
T KOG0316|consen 72 SKFASC-------------GGDKAVQVWDV--NTGKVDRRFRGHLAQVNTVRFNEESSVVASGSFDSS--VRLWDCRSRS 134 (307)
T ss_pred cccccC-------------CCCceEEEEEc--ccCeeeeecccccceeeEEEecCcceEEEeccccce--eEEEEcccCC
Confidence 665543 45668899997 556566778888899999999988887766655443 3666554444
Q ss_pred CCCCcEEeecCCCccccCCCCCCCeEeccCCCEEEEEeeeccCCCcEEEEecCCCCCCCCCCeEEEEECCCCceEEEecc
Q 002209 491 KDVAPRILFDRSSEDVYSDPGSPMMRRTSTGTYVIAKIKKENDEGTYILLNGNGATPEGNIPFLDLFDINTGSKERIWES 570 (953)
Q Consensus 491 ~~~~~~~~~~~~~~~~~~~~~~p~~~~SpDG~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~d~~~~~~~~l~~~ 570 (953)
.+|.++.+.....+. +.--.+..|+..+.++ .+..||+..|...-
T Consensus 135 --~ePiQildea~D~V~--------Si~v~~heIvaGS~DG---------------------tvRtydiR~G~l~s---- 179 (307)
T KOG0316|consen 135 --FEPIQILDEAKDGVS--------SIDVAEHEIVAGSVDG---------------------TVRTYDIRKGTLSS---- 179 (307)
T ss_pred --CCccchhhhhcCcee--------EEEecccEEEeeccCC---------------------cEEEEEeecceeeh----
Confidence 577777665433321 1222233333333211 27777876553221
Q ss_pred CcccceeeeEeeccCCccccccccCCEEEEEEecCCCCceEEEEECCCCCee
Q 002209 571 DKEKYYETTVALMSDQTEGDLYLNQLKILTSKESKTENTQYYIQSWPDKKSC 622 (953)
Q Consensus 571 ~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~p~~l~~~~~~~g~~~ 622 (953)
.|+.... ...+||+|++-.+...-. ..+.++|-++|+..
T Consensus 180 ---Dy~g~pi------t~vs~s~d~nc~La~~l~----stlrLlDk~tGklL 218 (307)
T KOG0316|consen 180 ---DYFGHPI------TSVSFSKDGNCSLASSLD----STLRLLDKETGKLL 218 (307)
T ss_pred ---hhcCCcc------eeEEecCCCCEEEEeecc----ceeeecccchhHHH
Confidence 1222111 225789999977765443 34888888888653
No 355
>KOG0264 consensus Nucleosome remodeling factor, subunit CAF1/NURF55/MSI1 [Chromatin structure and dynamics]
Probab=97.38 E-value=0.013 Score=62.57 Aligned_cols=229 Identities=10% Similarity=0.230 Sum_probs=129.0
Q ss_pred eceEEEEccCCCCCCce-------eeeecCCCCCcccceEeccCCCeEEEEEeeccccCCCCcceEEEEECCCCc-----
Q 002209 163 TGIGIHQLFPDGKLGQE-------IEIQGFPDGAKLNFVTWSQDGKHLAFSIRIDAEDSSSSKLRVWVADVDTGK----- 230 (953)
Q Consensus 163 ~~i~i~~~~~~g~~~~~-------~~l~~~~~~~~~~~~~wSPDG~~laf~~~~~~~~~~~~~~~l~~~d~~~g~----- 230 (953)
++++|||.+........ .+|.++.. ......|++.-.-.+.+.. .+....+|-+...+.+
T Consensus 147 ~dv~Vfd~tk~~s~~~~~~~~~Pdl~L~gH~~--eg~glsWn~~~~g~Lls~~------~d~~i~lwdi~~~~~~~~~~~ 218 (422)
T KOG0264|consen 147 GDVYVFDYTKHPSKPKASGECRPDLRLKGHEK--EGYGLSWNRQQEGTLLSGS------DDHTICLWDINAESKEDKVVD 218 (422)
T ss_pred CCEEEEEeccCCCcccccccCCCceEEEeecc--cccccccccccceeEeecc------CCCcEEEEeccccccCCcccc
Confidence 57899998654322221 15555543 2466899986554443321 3344455555443332
Q ss_pred eeecccCCCccccccccceEEecCCeEEEEEecCCCCCCCCCCCCCCCCceeecCCCccccchhhhhhcCCcchhhhhhh
Q 002209 231 ARPLFQSPDIYLNAIFDNFVWVNNSTLLVCTIPLLRGDPPKKPLVPLGPKMQSNEKRDIIQVRTFQDLLKDEYDEDLFDY 310 (953)
Q Consensus 231 ~~~lt~~~~~~~~~~~~~~~wspDg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~ 310 (953)
++.++.... ..++.++|.+-...+|.+..
T Consensus 219 p~~~~~~h~----~~VeDV~~h~~h~~lF~sv~----------------------------------------------- 247 (422)
T KOG0264|consen 219 PKTIFSGHE----DVVEDVAWHPLHEDLFGSVG----------------------------------------------- 247 (422)
T ss_pred ceEEeecCC----cceehhhccccchhhheeec-----------------------------------------------
Confidence 122222222 23778899987776665411
Q ss_pred hccceEEEEEc-CC--ceeEeCCC--CcccccccCCCCcEEEEEEecCCccccccCCCCCcceEEEeccCceEEEeccCC
Q 002209 311 YATTQLVLVSL-DG--TVKEIGPP--AVYTSLDPSPDEKYILISSIHRPYSFIVPCGRFPRQVGVWTTDGIFVRELCDLP 385 (953)
Q Consensus 311 ~~~~~l~~~~~-~g--~~~~l~~~--~~~~~~~~SpDG~~l~~~~~~~~~~~~~~~~~~~~~i~~~d~~g~~~~~l~~~~ 385 (953)
..+.|.+.|+ ++ +....... +.+..++|+|=+.+|+.+.. ..+.|.+||+..=.. .+.
T Consensus 248 -dd~~L~iwD~R~~~~~~~~~~~ah~~~vn~~~fnp~~~~ilAT~S------------~D~tV~LwDlRnL~~-~lh--- 310 (422)
T KOG0264|consen 248 -DDGKLMIWDTRSNTSKPSHSVKAHSAEVNCVAFNPFNEFILATGS------------ADKTVALWDLRNLNK-PLH--- 310 (422)
T ss_pred -CCCeEEEEEcCCCCCCCcccccccCCceeEEEeCCCCCceEEecc------------CCCcEEEeechhccc-Cce---
Confidence 2245667776 43 22222222 67788999997777766652 134899999973221 111
Q ss_pred CcccCCccccccccCccceeeccCCCCceEEEEeccCCCcccccccCCeEEEEecCC---------CCCCCceEEe---e
Q 002209 386 LAEDIPIAFNSVRKGMRSINWRSDKPSTLYWAETQDGGDAKVEVTPRDIIYTQQAEP---------VQGEGPEILH---K 453 (953)
Q Consensus 386 ~~~~~p~~~~~~~~~~~~~~wspDg~~i~~~~~~~~~~~~~~~~~~~~~l~~~d~~~---------~~g~~~~~l~---~ 453 (953)
.+.+....+..+.|||+-..++-.. +....+.+||+.. ++.+.+..|. +
T Consensus 311 -------~~e~H~dev~~V~WSPh~etvLASS------------g~D~rl~vWDls~ig~eq~~eda~dgppEllF~HgG 371 (422)
T KOG0264|consen 311 -------TFEGHEDEVFQVEWSPHNETVLASS------------GTDRRLNVWDLSRIGEEQSPEDAEDGPPELLFIHGG 371 (422)
T ss_pred -------eccCCCcceEEEEeCCCCCceeEec------------ccCCcEEEEeccccccccChhhhccCCcceeEEecC
Confidence 2223445567899999998876651 2345677888621 1112233343 3
Q ss_pred cccccCCeeeccCCceEEEEEecccCceEEEEEc
Q 002209 454 LDLRYGGISWCDDSLALVYESWYKTRRTRTWVIS 487 (953)
Q Consensus 454 ~~~~~~~~~~SpDg~~l~~~~~~~~~~~~l~~~d 487 (953)
+...+..+.|.|.--+++.+...++. .+||.+.
T Consensus 372 H~~kV~DfsWnp~ePW~I~SvaeDN~-LqIW~~s 404 (422)
T KOG0264|consen 372 HTAKVSDFSWNPNEPWTIASVAEDNI-LQIWQMA 404 (422)
T ss_pred cccccccccCCCCCCeEEEEecCCce-EEEeecc
Confidence 34456778999999887776655532 4677654
No 356
>KOG1539 consensus WD repeat protein [General function prediction only]
Probab=97.36 E-value=0.0077 Score=68.86 Aligned_cols=83 Identities=14% Similarity=0.154 Sum_probs=53.3
Q ss_pred CCeEEEEecCCCCCCC-ceEEeecccccCCeeeccCCceEEEEEecccCceEEEEEcCCCCCCCcEEeecCCCccccCCC
Q 002209 432 RDIIYTQQAEPVQGEG-PEILHKLDLRYGGISWCDDSLALVYESWYKTRRTRTWVISPGSKDVAPRILFDRSSEDVYSDP 510 (953)
Q Consensus 432 ~~~l~~~d~~~~~g~~-~~~l~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~ 510 (953)
.-.|.++|. ...+ .+.+..+...++.+.||||||+|+.++.+... ++|.+ -++..--..+++.+...
T Consensus 555 df~I~vvD~---~t~kvvR~f~gh~nritd~~FS~DgrWlisasmD~tI--r~wDl--pt~~lID~~~vd~~~~s----- 622 (910)
T KOG1539|consen 555 DFSIRVVDV---VTRKVVREFWGHGNRITDMTFSPDGRWLISASMDSTI--RTWDL--PTGTLIDGLLVDSPCTS----- 622 (910)
T ss_pred ceeEEEEEc---hhhhhhHHhhccccceeeeEeCCCCcEEEEeecCCcE--EEEec--cCcceeeeEecCCccee-----
Confidence 346788885 2222 34455677788899999999999999876533 55544 44311112223333222
Q ss_pred CCCCeEeccCCCEEEEEeee
Q 002209 511 GSPMMRRTSTGTYVIAKIKK 530 (953)
Q Consensus 511 ~~p~~~~SpDG~~l~~~~~~ 530 (953)
++|||.|.+|+....+
T Consensus 623 ----ls~SPngD~LAT~Hvd 638 (910)
T KOG1539|consen 623 ----LSFSPNGDFLATVHVD 638 (910)
T ss_pred ----eEECCCCCEEEEEEec
Confidence 8899999999988754
No 357
>KOG0292 consensus Vesicle coat complex COPI, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.29 E-value=0.13 Score=59.68 Aligned_cols=249 Identities=14% Similarity=0.177 Sum_probs=133.9
Q ss_pred CCCCceecCCCCEEEEEecCCCCCccccccccceeceEEecCCCCCCcceeeeeceEEEEccCCCCCCceeeeecCC-CC
Q 002209 110 PLPALSFSPQRDKILFLKRRALPPLEELARPEEKLAGLRIDGKCNTRSRMSFYTGIGIHQLFPDGKLGQEIEIQGFP-DG 188 (953)
Q Consensus 110 ~~~~~~~SPDG~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~i~~~~~~g~~~~~~~l~~~~-~~ 188 (953)
++-.++|-|-.-||+.+-.. +.|.+||-.- | +.|..+. +.
T Consensus 11 RvKglsFHP~rPwILtslHs---------------------------------G~IQlWDYRM-~-----tli~rFdeHd 51 (1202)
T KOG0292|consen 11 RVKGLSFHPKRPWILTSLHS---------------------------------GVIQLWDYRM-G-----TLIDRFDEHD 51 (1202)
T ss_pred cccceecCCCCCEEEEeecC---------------------------------ceeeeehhhh-h-----hHHhhhhccC
Confidence 56678899988888877653 3567777632 1 1222122 33
Q ss_pred CcccceEeccCCCeEEEEEeeccccCCCCcceEEEEECCCCcee-ecccCCCccccccccceEEecCCeEEEEEecCCCC
Q 002209 189 AKLNFVTWSQDGKHLAFSIRIDAEDSSSSKLRVWVADVDTGKAR-PLFQSPDIYLNAIFDNFVWVNNSTLLVCTIPLLRG 267 (953)
Q Consensus 189 ~~~~~~~wSPDG~~laf~~~~~~~~~~~~~~~l~~~d~~~g~~~-~lt~~~~~~~~~~~~~~~wspDg~~l~~~~~~~~~ 267 (953)
+.++...|.|++-. |++ +.....|-+|+.+..... .|..+-+. +..+.|.+.=-+|+.++
T Consensus 52 GpVRgv~FH~~qpl--FVS-------GGDDykIkVWnYk~rrclftL~GHlDY-----VRt~~FHheyPWIlSAS----- 112 (1202)
T KOG0292|consen 52 GPVRGVDFHPTQPL--FVS-------GGDDYKIKVWNYKTRRCLFTLLGHLDY-----VRTVFFHHEYPWILSAS----- 112 (1202)
T ss_pred CccceeeecCCCCe--EEe-------cCCccEEEEEecccceehhhhccccce-----eEEeeccCCCceEEEcc-----
Confidence 47889999998763 544 222455555555443321 22222221 55666776666776541
Q ss_pred CCCCCCCCCCCCceeecCCCccccchhhhhhcCCcchhhhhhhhccceEEEEEc-CC-ceeEeCCC-CcccccccCCCCc
Q 002209 268 DPPKKPLVPLGPKMQSNEKRDIIQVRTFQDLLKDEYDEDLFDYYATTQLVLVSL-DG-TVKEIGPP-AVYTSLDPSPDEK 344 (953)
Q Consensus 268 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~l~~~~~-~g-~~~~l~~~-~~~~~~~~SpDG~ 344 (953)
.| ..|.+++- ++ ....++.. -.+....|.|-..
T Consensus 113 -----------------------------------DD---------QTIrIWNwqsr~~iavltGHnHYVMcAqFhptED 148 (1202)
T KOG0292|consen 113 -----------------------------------DD---------QTIRIWNWQSRKCIAVLTGHNHYVMCAQFHPTED 148 (1202)
T ss_pred -----------------------------------CC---------CeEEEEeccCCceEEEEecCceEEEeeccCCccc
Confidence 11 23444454 55 34555555 6778889999888
Q ss_pred EEEEEEecCCccccccCCCCCcceEEEeccCceEEEeccCCCcccC----------C--c-----cccccccCccceeec
Q 002209 345 YILISSIHRPYSFIVPCGRFPRQVGVWTTDGIFVRELCDLPLAEDI----------P--I-----AFNSVRKGMRSINWR 407 (953)
Q Consensus 345 ~l~~~~~~~~~~~~~~~~~~~~~i~~~d~~g~~~~~l~~~~~~~~~----------p--~-----~~~~~~~~~~~~~ws 407 (953)
.|+..+.+ +.|.+||+.|-..+........+.+ + . -..++.-|+.-.+|.
T Consensus 149 lIVSaSLD-------------QTVRVWDisGLRkk~~~pg~~e~~~~~~~~~~dLfg~~DaVVK~VLEGHDRGVNwaAfh 215 (1202)
T KOG0292|consen 149 LIVSASLD-------------QTVRVWDISGLRKKNKAPGSLEDQMRGQQGNSDLFGQTDAVVKHVLEGHDRGVNWAAFH 215 (1202)
T ss_pred eEEEeccc-------------ceEEEEeecchhccCCCCCCchhhhhccccchhhcCCcCeeeeeeecccccccceEEec
Confidence 88877744 4999999987544443332111100 0 0 112233333445555
Q ss_pred cCCCCceEEEEeccCCCcccccccCCeEEEEecCCCCCCCce--EEeecccccCCeeeccCCceEEEEEecccCceEEEE
Q 002209 408 SDKPSTLYWAETQDGGDAKVEVTPRDIIYTQQAEPVQGEGPE--ILHKLDLRYGGISWCDDSLALVYESWYKTRRTRTWV 485 (953)
Q Consensus 408 pDg~~i~~~~~~~~~~~~~~~~~~~~~l~~~d~~~~~g~~~~--~l~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~l~~ 485 (953)
|--..|+-. .| +..-.+|.+.. ...-+ ..-++-.+++++.|.|....|+..++++. .++|-
T Consensus 216 pTlpliVSG---~D--------DRqVKlWrmne----tKaWEvDtcrgH~nnVssvlfhp~q~lIlSnsEDks--irVwD 278 (1202)
T KOG0292|consen 216 PTLPLIVSG---AD--------DRQVKLWRMNE----TKAWEVDTCRGHYNNVSSVLFHPHQDLILSNSEDKS--IRVWD 278 (1202)
T ss_pred CCcceEEec---CC--------cceeeEEEecc----ccceeehhhhcccCCcceEEecCccceeEecCCCcc--EEEEe
Confidence 533322211 11 11124555542 21111 12345667888999998887777665553 36665
Q ss_pred EcCCC
Q 002209 486 ISPGS 490 (953)
Q Consensus 486 ~d~~~ 490 (953)
++-.+
T Consensus 279 m~kRt 283 (1202)
T KOG0292|consen 279 MTKRT 283 (1202)
T ss_pred ccccc
Confidence 55433
No 358
>KOG1516 consensus Carboxylesterase and related proteins [General function prediction only]
Probab=97.26 E-value=0.00037 Score=82.45 Aligned_cols=126 Identities=24% Similarity=0.260 Sum_probs=79.6
Q ss_pred EEEEEEcCCCCCCCCCCCccEEEEeCCCCCcCcCCCCcccCCCCCCCCccchHHHHHHHcCcEEEEcCCC-CCCCC---C
Q 002209 652 LSATLYLPPGYDPSKDGPLPCLFWSYPGEFKSKDAAGQVRGSPNEFPRIGSTSVLLWLARGFAILGGPTT-PIIGE---G 727 (953)
Q Consensus 652 ~~~~l~~P~~~~~~~~~~~P~vv~~hGg~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~G~~V~~~~~~-~~~G~---G 727 (953)
++..+|.|.....+ + +||+|++|||.+..+. ...+.... ....+..+..+|+.++|| |..|+ |
T Consensus 97 LylNV~tp~~~~~~--~-~pV~V~iHGG~~~~gs--------~~~~~~~~--~~~~~~~~~VVvVt~~YRLG~lGF~st~ 163 (545)
T KOG1516|consen 97 LYLNVYTPQGCSES--K-LPVMVYIHGGGFQFGS--------ASSFEIIS--PAYVLLLKDVVVVTINYRLGPLGFLSTG 163 (545)
T ss_pred ceEEEeccCCCccC--C-CCEEEEEeCCceeecc--------ccchhhcC--chhccccCCEEEEEecccceeceeeecC
Confidence 67788888752211 2 9999999998543322 11121111 122334567888886664 32332 2
Q ss_pred ChhhhhhhHHHHHHHHHHHHHHHHHc---CCCCCCcEEEEEeChHHHHHHHHHHhC--CCcccEEEEcccC
Q 002209 728 DEEANDRFVEQLVACAEAAVEEVVRR---GVAHPSKIAVGGHSYGAFMTANLLAHA--PHLFCCGIARSGA 793 (953)
Q Consensus 728 ~~~~~~~~~~~~~~D~~~~~~~l~~~---~~~d~~~i~l~G~S~GG~~a~~~a~~~--p~~~~a~v~~~~~ 793 (953)
.+..+ +...+.|+..|++|+.+. -.-|+++|.|+|||+||..+..+.... ..+|+.+|..+|.
T Consensus 164 d~~~~---gN~gl~Dq~~AL~wv~~~I~~FGGdp~~vTl~G~saGa~~v~~l~~Sp~s~~LF~~aI~~SG~ 231 (545)
T KOG1516|consen 164 DSAAP---GNLGLFDQLLALRWVKDNIPSFGGDPKNVTLFGHSAGAASVSLLTLSPHSRGLFHKAISMSGN 231 (545)
T ss_pred CCCCC---CcccHHHHHHHHHHHHHHHHhcCCCCCeEEEEeechhHHHHHHHhcCHhhHHHHHHHHhhccc
Confidence 22222 334456999999999775 236899999999999999987776521 2478888888875
No 359
>KOG0290 consensus Conserved WD40 repeat-containing protein AN11 [Function unknown]
Probab=97.26 E-value=0.068 Score=53.91 Aligned_cols=232 Identities=16% Similarity=0.209 Sum_probs=123.1
Q ss_pred ceEEEEccCCCCCCceeeeecCCCCCcccceEeccCCC-----eEEEEEeeccccCCCCcceEEEEECCCCceee---cc
Q 002209 164 GIGIHQLFPDGKLGQEIEIQGFPDGAKLNFVTWSQDGK-----HLAFSIRIDAEDSSSSKLRVWVADVDTGKARP---LF 235 (953)
Q Consensus 164 ~i~i~~~~~~g~~~~~~~l~~~~~~~~~~~~~wSPDG~-----~laf~~~~~~~~~~~~~~~l~~~d~~~g~~~~---lt 235 (953)
.|.|..+..++ ++......+.....++...|.||.+ .||.+. .-.+||.++.+.++... |.
T Consensus 74 kvqiv~ld~~s--~e~~~~a~fd~~YP~tK~~wiPd~~g~~pdlLATs~---------D~LRlWri~~ee~~~~~~~~L~ 142 (364)
T KOG0290|consen 74 KVQIVQLDEDS--GELVEDANFDHPYPVTKLMWIPDSKGVYPDLLATSS---------DFLRLWRIGDEESRVELQSVLN 142 (364)
T ss_pred eeEEEEEccCC--CceeccCCCCCCCCccceEecCCccccCcchhhccc---------CeEEEEeccCcCCceehhhhhc
Confidence 45565554333 3322222222223677889999985 344432 36788888865544322 22
Q ss_pred cCCCccccccccceEEe-cCCeEEEEEecCCCCCCCCCCCCCCCCceeecCCCccccchhhhhhcCCcchhhhhhhhccc
Q 002209 236 QSPDIYLNAIFDNFVWV-NNSTLLVCTIPLLRGDPPKKPLVPLGPKMQSNEKRDIIQVRTFQDLLKDEYDEDLFDYYATT 314 (953)
Q Consensus 236 ~~~~~~~~~~~~~~~ws-pDg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~ 314 (953)
...+..+.+.+.+|.|. -|-++|..++- | .+-
T Consensus 143 ~~kns~~~aPlTSFDWne~dp~~igtSSi----------------------------------------D-------TTC 175 (364)
T KOG0290|consen 143 NNKNSEFCAPLTSFDWNEVDPNLIGTSSI----------------------------------------D-------TTC 175 (364)
T ss_pred cCcccccCCcccccccccCCcceeEeecc----------------------------------------c-------CeE
Confidence 22333345557788897 44455554410 1 223
Q ss_pred eEEEEEc--CC--ceeEeCCCCcccccccCCCCcEEEEEEecCCccccccCCCCCcceEEEeccCceEEEeccCCCcccC
Q 002209 315 QLVLVSL--DG--TVKEIGPPAVYTSLDPSPDEKYILISSIHRPYSFIVPCGRFPRQVGVWTTDGIFVRELCDLPLAEDI 390 (953)
Q Consensus 315 ~l~~~~~--~g--~~~~l~~~~~~~~~~~SpDG~~l~~~~~~~~~~~~~~~~~~~~~i~~~d~~g~~~~~l~~~~~~~~~ 390 (953)
.||-+.. .| +.+.|.....+..++|+.+|+.++.+.. ..+.+.++|+...+...+.-.+.....
T Consensus 176 TiWdie~~~~~~vkTQLIAHDKEV~DIaf~~~s~~~FASvg------------aDGSvRmFDLR~leHSTIIYE~p~~~~ 243 (364)
T KOG0290|consen 176 TIWDIETGVSGTVKTQLIAHDKEVYDIAFLKGSRDVFASVG------------ADGSVRMFDLRSLEHSTIIYEDPSPST 243 (364)
T ss_pred EEEEEeeccccceeeEEEecCcceeEEEeccCccceEEEec------------CCCcEEEEEecccccceEEecCCCCCC
Confidence 3443332 22 4445555578889999998877655542 234788899876554443222111111
Q ss_pred CccccccccCccceeeccCCCCceEEEEeccCCCcccccccCCeEEEEecCCCCCCCceEEeecccccCCeeeccCCceE
Q 002209 391 PIAFNSVRKGMRSINWRSDKPSTLYWAETQDGGDAKVEVTPRDIIYTQQAEPVQGEGPEILHKLDLRYGGISWCDDSLAL 470 (953)
Q Consensus 391 p~~~~~~~~~~~~~~wspDg~~i~~~~~~~~~~~~~~~~~~~~~l~~~d~~~~~g~~~~~l~~~~~~~~~~~~SpDg~~l 470 (953)
|. -.++|++......-.. . -....|.++|+ ..-......|..+...+++++|.|-++.-
T Consensus 244 pL---------lRLswnkqDpnymATf-~----------~dS~~V~iLDi-R~P~tpva~L~~H~a~VNgIaWaPhS~~h 302 (364)
T KOG0290|consen 244 PL---------LRLSWNKQDPNYMATF-A----------MDSNKVVILDI-RVPCTPVARLRNHQASVNGIAWAPHSSSH 302 (364)
T ss_pred cc---------eeeccCcCCchHHhhh-h----------cCCceEEEEEe-cCCCcceehhhcCcccccceEecCCCCce
Confidence 11 2456665443221110 1 12345667775 12223344577888899999999998776
Q ss_pred EEEEecccCceEEEEEc
Q 002209 471 VYESWYKTRRTRTWVIS 487 (953)
Q Consensus 471 ~~~~~~~~~~~~l~~~d 487 (953)
+.+..++. +.-+|-++
T Consensus 303 ictaGDD~-qaliWDl~ 318 (364)
T KOG0290|consen 303 ICTAGDDC-QALIWDLQ 318 (364)
T ss_pred eeecCCcc-eEEEEecc
Confidence 65554442 22455444
No 360
>PF00975 Thioesterase: Thioesterase domain; InterPro: IPR001031 Thioesterase domains often occur integrated in or associated with peptide synthetases which are involved in the non-ribosomal synthesis of peptide antibiotics []. Thioesterases are required for the addition of the last amino acid to the peptide antibiotic, thereby forming a cyclic antibiotic. Next to the operons encoding these enzymes, in almost all cases, are genes that encode proteins that have similarity to the type II fatty acid thioesterases of vertebrates.; GO: 0016788 hydrolase activity, acting on ester bonds, 0009058 biosynthetic process; PDB: 2RON_A 2K2Q_B 3LCR_B 2HFJ_B 1MNQ_A 1MN6_B 1MNA_B 2HFK_B 2H7Y_B 2H7X_A ....
Probab=97.24 E-value=0.0064 Score=62.83 Aligned_cols=82 Identities=15% Similarity=0.151 Sum_probs=48.1
Q ss_pred HHHHHHHcCcEEEEcCCCCCCCCCChhhhhhhHHHHHHHHHHHHHHHHHcCCCCCCcEEEEEeChHHHHHHHHHHhC---
Q 002209 704 SVLLWLARGFAILGGPTTPIIGEGDEEANDRFVEQLVACAEAAVEEVVRRGVAHPSKIAVGGHSYGAFMTANLLAHA--- 780 (953)
Q Consensus 704 ~~~~la~~G~~V~~~~~~~~~G~G~~~~~~~~~~~~~~D~~~~~~~l~~~~~~d~~~i~l~G~S~GG~~a~~~a~~~--- 780 (953)
.+..+...++.|..... .|.+.........+.++.+..+.+..... ..++.|+|||+||.+|..+|.+-
T Consensus 19 la~~l~~~~~~v~~i~~---~~~~~~~~~~~si~~la~~y~~~I~~~~~-----~gp~~L~G~S~Gg~lA~E~A~~Le~~ 90 (229)
T PF00975_consen 19 LARALPDDVIGVYGIEY---PGRGDDEPPPDSIEELASRYAEAIRARQP-----EGPYVLAGWSFGGILAFEMARQLEEA 90 (229)
T ss_dssp HHHHHTTTEEEEEEECS---TTSCTTSHEESSHHHHHHHHHHHHHHHTS-----SSSEEEEEETHHHHHHHHHHHHHHHT
T ss_pred HHHhCCCCeEEEEEEec---CCCCCCCCCCCCHHHHHHHHHHHhhhhCC-----CCCeeehccCccHHHHHHHHHHHHHh
Confidence 33333333477777444 34432323334456666665555433321 23899999999999999988642
Q ss_pred CCcccEEEEcccC
Q 002209 781 PHLFCCGIARSGA 793 (953)
Q Consensus 781 p~~~~a~v~~~~~ 793 (953)
...+..++++.+.
T Consensus 91 G~~v~~l~liD~~ 103 (229)
T PF00975_consen 91 GEEVSRLILIDSP 103 (229)
T ss_dssp T-SESEEEEESCS
T ss_pred hhccCceEEecCC
Confidence 2346777777643
No 361
>PF07676 PD40: WD40-like Beta Propeller Repeat; InterPro: IPR011659 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide. WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events. This region appears to be related to the IPR001680 from INTERPRO repeat. This model is likely to miss copies within a sequence.; PDB: 2HQS_D 1C5K_A 2IVZ_A 2W8B_D 3IAX_A 1CRZ_A 1N6F_D 1N6D_C 1N6E_C 1K32_A ....
Probab=97.23 E-value=0.00065 Score=47.65 Aligned_cols=31 Identities=23% Similarity=0.457 Sum_probs=23.3
Q ss_pred CcccceEeccCCCeEEEEEeeccccCCCCcceEEE
Q 002209 189 AKLNFVTWSQDGKHLAFSIRIDAEDSSSSKLRVWV 223 (953)
Q Consensus 189 ~~~~~~~wSPDG~~laf~~~~~~~~~~~~~~~l~~ 223 (953)
.....|.|||||++|+|++++. +.+..+||+
T Consensus 9 ~~~~~p~~SpDGk~i~f~s~~~----~~g~~diy~ 39 (39)
T PF07676_consen 9 GDDGSPAWSPDGKYIYFTSNRN----DRGSFDIYV 39 (39)
T ss_dssp SSEEEEEE-TTSSEEEEEEECT------SSEEEEE
T ss_pred ccccCEEEecCCCEEEEEecCC----CCCCcCEEC
Confidence 4688999999999999998743 146788885
No 362
>PF07519 Tannase: Tannase and feruloyl esterase; InterPro: IPR011118 This family includes fungal tannase [] and feruloyl esterase [, ]. It also includes several bacterial homologues of unknown function.
Probab=97.22 E-value=0.032 Score=63.66 Aligned_cols=86 Identities=17% Similarity=0.078 Sum_probs=64.0
Q ss_pred HHHHcCcEEEEcCCCCCCCCC----Chhh-----hhhhHHHHHHHHHHHHHHHHHc-CCCCCCcEEEEEeChHHHHHHHH
Q 002209 707 LWLARGFAILGGPTTPIIGEG----DEEA-----NDRFVEQLVACAEAAVEEVVRR-GVAHPSKIAVGGHSYGAFMTANL 776 (953)
Q Consensus 707 ~la~~G~~V~~~~~~~~~G~G----~~~~-----~~~~~~~~~~D~~~~~~~l~~~-~~~d~~~i~l~G~S~GG~~a~~~ 776 (953)
.-+++||+++.-|. |..+.. .++. -.+|....+.+...+.+.|.+. +...+++-...|.|-||-.++.+
T Consensus 54 ~~~~~G~A~~~TD~-Gh~~~~~~~~~~~~~n~~~~~dfa~ra~h~~~~~aK~l~~~~Yg~~p~~sY~~GcS~GGRqgl~~ 132 (474)
T PF07519_consen 54 TALARGYATASTDS-GHQGSAGSDDASFGNNPEALLDFAYRALHETTVVAKALIEAFYGKAPKYSYFSGCSTGGRQGLMA 132 (474)
T ss_pred hhhhcCeEEEEecC-CCCCCcccccccccCCHHHHHHHHhhHHHHHHHHHHHHHHHHhCCCCCceEEEEeCCCcchHHHH
Confidence 34689999999554 332221 1222 2355566677777777778776 33567899999999999999999
Q ss_pred HHhCCCcccEEEEcccC
Q 002209 777 LAHAPHLFCCGIARSGA 793 (953)
Q Consensus 777 a~~~p~~~~a~v~~~~~ 793 (953)
|-++|+.|.++++.+|.
T Consensus 133 AQryP~dfDGIlAgaPA 149 (474)
T PF07519_consen 133 AQRYPEDFDGILAGAPA 149 (474)
T ss_pred HHhChhhcCeEEeCCch
Confidence 99999999999999884
No 363
>KOG4378 consensus Nuclear protein COP1 [Signal transduction mechanisms]
Probab=97.19 E-value=0.013 Score=62.93 Aligned_cols=142 Identities=12% Similarity=0.111 Sum_probs=89.6
Q ss_pred ceEEEEEc-CC-ceeEeCCC--CcccccccCCCCcEEEEEEecCCccccccCCCCCcceEEEeccCceEEEeccCCCccc
Q 002209 314 TQLVLVSL-DG-TVKEIGPP--AVYTSLDPSPDEKYILISSIHRPYSFIVPCGRFPRQVGVWTTDGIFVRELCDLPLAED 389 (953)
Q Consensus 314 ~~l~~~~~-~g-~~~~l~~~--~~~~~~~~SpDG~~l~~~~~~~~~~~~~~~~~~~~~i~~~d~~g~~~~~l~~~~~~~~ 389 (953)
+.|.+..+ ++ +.+.++.+ ..++-+.+||-.|+++.+..++ +.+.+||+.|..+..-... ...
T Consensus 143 Gdiiih~~~t~~~tt~f~~~sgqsvRll~ys~skr~lL~~asd~------------G~VtlwDv~g~sp~~~~~~--~Hs 208 (673)
T KOG4378|consen 143 GDIIIHGTKTKQKTTTFTIDSGQSVRLLRYSPSKRFLLSIASDK------------GAVTLWDVQGMSPIFHASE--AHS 208 (673)
T ss_pred CcEEEEecccCccccceecCCCCeEEEeecccccceeeEeeccC------------CeEEEEeccCCCcccchhh--hcc
Confidence 45667777 55 34445444 4455788999999998887543 5899999997544321111 111
Q ss_pred CCccccccccCccceeeccCCCCceEEEEeccCCCcccccccCCeEEEEecCCCCCCCceEEeecccccCCeeeccCCce
Q 002209 390 IPIAFNSVRKGMRSINWRSDKPSTLYWAETQDGGDAKVEVTPRDIIYTQQAEPVQGEGPEILHKLDLRYGGISWCDDSLA 469 (953)
Q Consensus 390 ~p~~~~~~~~~~~~~~wspDg~~i~~~~~~~~~~~~~~~~~~~~~l~~~d~~~~~g~~~~~l~~~~~~~~~~~~SpDg~~ 469 (953)
.| .+.+.|||-...|+..+ +-...|++||. .......-...+.....++|+++|.+
T Consensus 209 AP---------~~gicfspsne~l~vsV------------G~Dkki~~yD~---~s~~s~~~l~y~~Plstvaf~~~G~~ 264 (673)
T KOG4378|consen 209 AP---------CRGICFSPSNEALLVSV------------GYDKKINIYDI---RSQASTDRLTYSHPLSTVAFSECGTY 264 (673)
T ss_pred CC---------cCcceecCCccceEEEe------------cccceEEEeec---ccccccceeeecCCcceeeecCCceE
Confidence 12 25789999887665541 34558999995 22221111223455678999999999
Q ss_pred EEEEEecccCceEEEEEcCCCCCCCcEEe
Q 002209 470 LVYESWYKTRRTRTWVISPGSKDVAPRIL 498 (953)
Q Consensus 470 l~~~~~~~~~~~~l~~~d~~~~~~~~~~~ 498 (953)
|+.....+ +|+.+|+.+. ..|..+
T Consensus 265 L~aG~s~G----~~i~YD~R~~-k~Pv~v 288 (673)
T KOG4378|consen 265 LCAGNSKG----ELIAYDMRST-KAPVAV 288 (673)
T ss_pred EEeecCCc----eEEEEecccC-CCCceE
Confidence 98875433 8999998875 344443
No 364
>KOG0277 consensus Peroxisomal targeting signal type 2 receptor [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.18 E-value=0.027 Score=55.63 Aligned_cols=205 Identities=11% Similarity=0.098 Sum_probs=118.0
Q ss_pred cccceEecc--CCCeEEEEEeeccccCCCCcceEEEEECCCC-ceeecccCCCccccccccceEEecCCeEEEEEecCCC
Q 002209 190 KLNFVTWSQ--DGKHLAFSIRIDAEDSSSSKLRVWVADVDTG-KARPLFQSPDIYLNAIFDNFVWVNNSTLLVCTIPLLR 266 (953)
Q Consensus 190 ~~~~~~wSP--DG~~laf~~~~~~~~~~~~~~~l~~~d~~~g-~~~~lt~~~~~~~~~~~~~~~wspDg~~l~~~~~~~~ 266 (953)
.-..+.||| +++ ||...... -+=.|...|++++++++ ..+.+-.... +.....++|++.-.-++++..
T Consensus 10 ~GysvqfSPf~~nr-LavAt~q~--yGl~G~G~L~ile~~~~~gi~e~~s~d~---~D~LfdV~Wse~~e~~~~~a~--- 80 (311)
T KOG0277|consen 10 HGYSVQFSPFVENR-LAVATAQH--YGLAGNGRLFILEVTDPKGIQECQSYDT---EDGLFDVAWSENHENQVIAAS--- 80 (311)
T ss_pred ccceeEecccccch-hheeehhh--cccccCceEEEEecCCCCCeEEEEeeec---ccceeEeeecCCCcceEEEEe---
Confidence 346678888 444 44433211 11246789999999643 3332222111 111558999977765554411
Q ss_pred CCCCCCCCCCCCCceeecCCCccccchhhhhhcCCcchhhhhhhhccceEEEEEc---CCceeEeCCC-CcccccccCCC
Q 002209 267 GDPPKKPLVPLGPKMQSNEKRDIIQVRTFQDLLKDEYDEDLFDYYATTQLVLVSL---DGTVKEIGPP-AVYTSLDPSPD 342 (953)
Q Consensus 267 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~l~~~~~---~g~~~~l~~~-~~~~~~~~SpD 342 (953)
+.+.|.++|+ .+....+-+. ..+.++.|++-
T Consensus 81 ---------------------------------------------GDGSLrl~d~~~~s~Pi~~~kEH~~EV~Svdwn~~ 115 (311)
T KOG0277|consen 81 ---------------------------------------------GDGSLRLFDLTMPSKPIHKFKEHKREVYSVDWNTV 115 (311)
T ss_pred ---------------------------------------------cCceEEEeccCCCCcchhHHHhhhhheEEeccccc
Confidence 3344555565 2222333333 67788999997
Q ss_pred CcEEEEEEecCCccccccCCCCCcceEEEeccCc-eEEEeccCCCcccCCccccccccCccceeeccCCCCceEEEEecc
Q 002209 343 EKYILISSIHRPYSFIVPCGRFPRQVGVWTTDGI-FVRELCDLPLAEDIPIAFNSVRKGMRSINWRSDKPSTLYWAETQD 421 (953)
Q Consensus 343 G~~l~~~~~~~~~~~~~~~~~~~~~i~~~d~~g~-~~~~l~~~~~~~~~p~~~~~~~~~~~~~~wspDg~~i~~~~~~~~ 421 (953)
-++++.++ .+.+.|.+|+.+.. .++. |++.+.-+...+|||--..+.-.
T Consensus 116 ~r~~~lts------------SWD~TiKLW~~~r~~Sv~T-------------f~gh~~~Iy~a~~sp~~~nlfas----- 165 (311)
T KOG0277|consen 116 RRRIFLTS------------SWDGTIKLWDPNRPNSVQT-------------FNGHNSCIYQAAFSPHIPNLFAS----- 165 (311)
T ss_pred cceeEEee------------ccCCceEeecCCCCcceEe-------------ecCCccEEEEEecCCCCCCeEEE-----
Confidence 77776665 24568999988732 2222 22333445678899876654332
Q ss_pred CCCcccccccCCeEEEEecCCCCCCCceEEeecccccCCeeeccCCceEEEEEecccCceEEEEEcCCC
Q 002209 422 GGDAKVEVTPRDIIYTQQAEPVQGEGPEILHKLDLRYGGISWCDDSLALVYESWYKTRRTRTWVISPGS 490 (953)
Q Consensus 422 ~~~~~~~~~~~~~l~~~d~~~~~g~~~~~l~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~l~~~d~~~ 490 (953)
.++...+.+||+ ... |+...+..+...+-...|+.-...+++....+. -|+..|+..
T Consensus 166 -------~Sgd~~l~lwdv-r~~-gk~~~i~ah~~Eil~cdw~ky~~~vl~Tg~vd~---~vr~wDir~ 222 (311)
T KOG0277|consen 166 -------ASGDGTLRLWDV-RSP-GKFMSIEAHNSEILCCDWSKYNHNVLATGGVDN---LVRGWDIRN 222 (311)
T ss_pred -------ccCCceEEEEEe-cCC-CceeEEEeccceeEeecccccCCcEEEecCCCc---eEEEEehhh
Confidence 155667777876 223 455456666666677889998888777764442 345555444
No 365
>KOG1034 consensus Transcriptional repressor EED/ESC/FIE, required for transcriptional silencing, WD repeat superfamily [Transcription]
Probab=97.18 E-value=0.018 Score=58.95 Aligned_cols=116 Identities=14% Similarity=0.148 Sum_probs=71.5
Q ss_pred cccceEeccCCCe---EEEEEeeccccCCCCcceEEEEECCCCceeecccCCCccccccccceEEecCCeEEEEEecCCC
Q 002209 190 KLNFVTWSQDGKH---LAFSIRIDAEDSSSSKLRVWVADVDTGKARPLFQSPDIYLNAIFDNFVWVNNSTLLVCTIPLLR 266 (953)
Q Consensus 190 ~~~~~~wSPDG~~---laf~~~~~~~~~~~~~~~l~~~d~~~g~~~~lt~~~~~~~~~~~~~~~wspDg~~l~~~~~~~~ 266 (953)
.-...+|+=|-.. ++.+ +...+.|+++|+.+++...-....+.. +..+.+-|+.-.|+.+..
T Consensus 91 sfytcsw~yd~~~~~p~la~--------~G~~GvIrVid~~~~~~~~~~~ghG~s----INeik~~p~~~qlvls~S--- 155 (385)
T KOG1034|consen 91 SFYTCSWSYDSNTGNPFLAA--------GGYLGVIRVIDVVSGQCSKNYRGHGGS----INEIKFHPDRPQLVLSAS--- 155 (385)
T ss_pred ceEEEEEEecCCCCCeeEEe--------ecceeEEEEEecchhhhccceeccCcc----chhhhcCCCCCcEEEEec---
Confidence 3455678765442 2222 225789999999988764333222222 667888888865554411
Q ss_pred CCCCCCCCCCCCCceeecCCCccccchhhhhhcCCcchhhhhhhhccceEEEEEc-CCceeEeCCC-----CcccccccC
Q 002209 267 GDPPKKPLVPLGPKMQSNEKRDIIQVRTFQDLLKDEYDEDLFDYYATTQLVLVSL-DGTVKEIGPP-----AVYTSLDPS 340 (953)
Q Consensus 267 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~l~~~~~-~g~~~~l~~~-----~~~~~~~~S 340 (953)
....|.+.++ ++.-..+..+ +.+-++.||
T Consensus 156 ---------------------------------------------kD~svRlwnI~~~~Cv~VfGG~egHrdeVLSvD~~ 190 (385)
T KOG1034|consen 156 ---------------------------------------------KDHSVRLWNIQTDVCVAVFGGVEGHRDEVLSVDFS 190 (385)
T ss_pred ---------------------------------------------CCceEEEEeccCCeEEEEecccccccCcEEEEEEc
Confidence 1123445566 5554444432 556789999
Q ss_pred CCCcEEEEEEecCCccccccCCCCCcceEEEeccCceE
Q 002209 341 PDEKYILISSIHRPYSFIVPCGRFPRQVGVWTTDGIFV 378 (953)
Q Consensus 341 pDG~~l~~~~~~~~~~~~~~~~~~~~~i~~~d~~g~~~ 378 (953)
+||.+|+....+. .|.+|++..++.
T Consensus 191 ~~gd~i~ScGmDh-------------slk~W~l~~~~f 215 (385)
T KOG1034|consen 191 LDGDRIASCGMDH-------------SLKLWRLNVKEF 215 (385)
T ss_pred CCCCeeeccCCcc-------------eEEEEecChhHH
Confidence 9999998776554 899999985443
No 366
>KOG1063 consensus RNA polymerase II elongator complex, subunit ELP2, WD repeat superfamily [Chromatin structure and dynamics; Transcription]
Probab=97.16 E-value=0.003 Score=70.48 Aligned_cols=109 Identities=16% Similarity=0.149 Sum_probs=65.8
Q ss_pred CCCceecCCCCEEEEEecCCCCCccccccccceeceEEecCCCCCCcceeeeeceEEEEccCCCCCCceeeeecCCCCCc
Q 002209 111 LPALSFSPQRDKILFLKRRALPPLEELARPEEKLAGLRIDGKCNTRSRMSFYTGIGIHQLFPDGKLGQEIEIQGFPDGAK 190 (953)
Q Consensus 111 ~~~~~~SPDG~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~i~~~~~~g~~~~~~~l~~~~~~~~ 190 (953)
+..+.+||+|+.||..... ..... ..|++|+... -.+...|.+ +.-.
T Consensus 528 v~~l~~s~~gnliASaCKS-----------------------~~~eh-----AvI~lw~t~~---W~~~~~L~~--HsLT 574 (764)
T KOG1063|consen 528 VYALAISPTGNLIASACKS-----------------------SLKEH-----AVIRLWNTAN---WLQVQELEG--HSLT 574 (764)
T ss_pred EEEEEecCCCCEEeehhhh-----------------------CCccc-----eEEEEEeccc---hhhhheecc--cceE
Confidence 6678999999999987763 11111 3689998632 122223332 1127
Q ss_pred ccceEeccCCCeEEEEEeeccccCCCCcceEEEEECCCCceeecccCCCccccccccceEEecCCeEEEEE
Q 002209 191 LNFVTWSQDGKHLAFSIRIDAEDSSSSKLRVWVADVDTGKARPLFQSPDIYLNAIFDNFVWVNNSTLLVCT 261 (953)
Q Consensus 191 ~~~~~wSPDG~~laf~~~~~~~~~~~~~~~l~~~d~~~g~~~~lt~~~~~~~~~~~~~~~wspDg~~l~~~ 261 (953)
+...+|||||++|+-+++ +-...||-.--+-....+... ...+..++-.+.|+||++.++.+
T Consensus 575 VT~l~FSpdg~~LLsvsR-------DRt~sl~~~~~~~~~e~~fa~--~k~HtRIIWdcsW~pde~~FaTa 636 (764)
T KOG1063|consen 575 VTRLAFSPDGRYLLSVSR-------DRTVSLYEVQEDIKDEFRFAC--LKAHTRIIWDCSWSPDEKYFATA 636 (764)
T ss_pred EEEEEECCCCcEEEEeec-------CceEEeeeeecccchhhhhcc--ccccceEEEEcccCcccceeEEe
Confidence 899999999999998774 335566654211111111111 11233456789999999986655
No 367
>KOG4283 consensus Transcription-coupled repair protein CSA, contains WD40 domain [Transcription; Replication, recombination and repair]
Probab=97.13 E-value=0.0098 Score=59.75 Aligned_cols=155 Identities=14% Similarity=0.116 Sum_probs=95.1
Q ss_pred cceeeeeceEEEEccCCCCCCceeeeecCCCCCcccceEeccCCC-eEEEEEeeccccCCCCcceEEEEECCCCceeecc
Q 002209 157 SRMSFYTGIGIHQLFPDGKLGQEIEIQGFPDGAKLNFVTWSQDGK-HLAFSIRIDAEDSSSSKLRVWVADVDTGKARPLF 235 (953)
Q Consensus 157 ~~~~~~~~i~i~~~~~~g~~~~~~~l~~~~~~~~~~~~~wSPDG~-~laf~~~~~~~~~~~~~~~l~~~d~~~g~~~~lt 235 (953)
...+|+..|.|||.++ .+..-. +.-.+.+..-+|||=.. +-+... +....++-+.|+.+|......
T Consensus 118 tssSFDhtlKVWDtnT----lQ~a~~--F~me~~VYshamSp~a~sHcLiA~-------gtr~~~VrLCDi~SGs~sH~L 184 (397)
T KOG4283|consen 118 TSSSFDHTLKVWDTNT----LQEAVD--FKMEGKVYSHAMSPMAMSHCLIAA-------GTRDVQVRLCDIASGSFSHTL 184 (397)
T ss_pred ecccccceEEEeeccc----ceeeEE--eecCceeehhhcChhhhcceEEEE-------ecCCCcEEEEeccCCcceeee
Confidence 3445667899999854 332211 22224677788999554 333333 223678999999999877665
Q ss_pred cCCCccccccccceEEecCCeEEEEEecCCCCCCCCCCCCCCCCceeecCCCccccchhhhhhcCCcchhhhhhhhccce
Q 002209 236 QSPDIYLNAIFDNFVWVNNSTLLVCTIPLLRGDPPKKPLVPLGPKMQSNEKRDIIQVRTFQDLLKDEYDEDLFDYYATTQ 315 (953)
Q Consensus 236 ~~~~~~~~~~~~~~~wspDg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~ 315 (953)
...... +-.+.|||-..++.++....+. .++|+.. . ..+-
T Consensus 185 sGHr~~----vlaV~Wsp~~e~vLatgsaDg~-----------irlWDiR--------r-----------------asgc 224 (397)
T KOG4283|consen 185 SGHRDG----VLAVEWSPSSEWVLATGSADGA-----------IRLWDIR--------R-----------------ASGC 224 (397)
T ss_pred ccccCc----eEEEEeccCceeEEEecCCCce-----------EEEEEee--------c-----------------ccce
Confidence 544433 6689999999998877221111 1122111 0 2244
Q ss_pred EEEEEc-CCceeEeC--CC---CcccccccCCCCcEEEEEEecCCccccccCCCCCcceEEEeccCce
Q 002209 316 LVLVSL-DGTVKEIG--PP---AVYTSLDPSPDEKYILISSIHRPYSFIVPCGRFPRQVGVWTTDGIF 377 (953)
Q Consensus 316 l~~~~~-~g~~~~l~--~~---~~~~~~~~SpDG~~l~~~~~~~~~~~~~~~~~~~~~i~~~d~~g~~ 377 (953)
+..+|. +++.-++. +. +-+.+.+|+.||++++....++ .+.+|+...++
T Consensus 225 f~~lD~hn~k~~p~~~~n~ah~gkvngla~tSd~~~l~~~gtd~-------------r~r~wn~~~G~ 279 (397)
T KOG4283|consen 225 FRVLDQHNTKRPPILKTNTAHYGKVNGLAWTSDARYLASCGTDD-------------RIRVWNMESGR 279 (397)
T ss_pred eEEeecccCccCccccccccccceeeeeeecccchhhhhccCcc-------------ceEEeecccCc
Confidence 556676 54322222 11 6677899999999998776443 78888887554
No 368
>PF07819 PGAP1: PGAP1-like protein; InterPro: IPR012908 The sequences found in this family are similar to PGAP1 (Q765A7 from SWISSPROT). This is an endoplasmic reticulum membrane protein with a catalytic serine-containing motif that is conserved in a number of lipases. PGAP1 functions as a GPI inositol-deacylase; this deacylation is important for the efficient transport of GPI-anchored proteins from the endoplasmic reticulum to the Golgi body [].; GO: 0016788 hydrolase activity, acting on ester bonds, 0006505 GPI anchor metabolic process, 0006886 intracellular protein transport, 0031227 intrinsic to endoplasmic reticulum membrane
Probab=97.12 E-value=0.0082 Score=61.31 Aligned_cols=54 Identities=15% Similarity=0.168 Sum_probs=37.8
Q ss_pred HHHHHHHHHHHHHcC---CCCCCcEEEEEeChHHHHHHHHHHhCC---CcccEEEEcccC
Q 002209 740 VACAEAAVEEVVRRG---VAHPSKIAVGGHSYGAFMTANLLAHAP---HLFCCGIARSGA 793 (953)
Q Consensus 740 ~~D~~~~~~~l~~~~---~~d~~~i~l~G~S~GG~~a~~~a~~~p---~~~~a~v~~~~~ 793 (953)
.+-+..+++++.+.. ...+++|.|+||||||.++-.++...+ +.++.+|..+.+
T Consensus 63 ~~~~~~~i~~i~~~~~~~~~~~~~vilVgHSmGGlvar~~l~~~~~~~~~v~~iitl~tP 122 (225)
T PF07819_consen 63 AEFLAEAIKYILELYKSNRPPPRSVILVGHSMGGLVARSALSLPNYDPDSVKTIITLGTP 122 (225)
T ss_pred HHHHHHHHHHHHHhhhhccCCCCceEEEEEchhhHHHHHHHhccccccccEEEEEEEcCC
Confidence 344455556655443 345789999999999999888876543 368888877654
No 369
>PTZ00472 serine carboxypeptidase (CBP1); Provisional
Probab=97.06 E-value=0.0032 Score=71.71 Aligned_cols=142 Identities=13% Similarity=0.092 Sum_probs=83.2
Q ss_pred CcEEEEEEEcCCCCCCCCCCCccEEEEeCCCCCcCcCCCCcccCCCCCCCCccc---hHHHHHHHcCcEEEEcCCCCCCC
Q 002209 649 GVQLSATLYLPPGYDPSKDGPLPCLFWSYPGEFKSKDAAGQVRGSPNEFPRIGS---TSVLLWLARGFAILGGPTTPIIG 725 (953)
Q Consensus 649 g~~~~~~l~~P~~~~~~~~~~~P~vv~~hGg~~~~~~~~~~~~~~~~~~~~~~~---~~~~~la~~G~~V~~~~~~~~~G 725 (953)
+..+..|++...+ ++. ..|+|||++|||..+.-......-||......+. .....|.+.+..|+. |-.-..|
T Consensus 60 ~~~lFyw~~~s~~-~~~---~~Pl~lwlnGGPG~ss~~G~f~E~GP~~i~~~~~~~~~n~~sW~~~~~~l~i-DqP~G~G 134 (462)
T PTZ00472 60 DKHYFYWAFGPRN-GNP---EAPVLLWMTGGPGCSSMFALLAENGPCLMNETTGDIYNNTYSWNNEAYVIYV-DQPAGVG 134 (462)
T ss_pred CceEEEEEEEcCC-CCC---CCCEEEEECCCCcHHHHHhhhccCCCeEEeCCCCceeECCcccccccCeEEE-eCCCCcC
Confidence 5578888886553 222 3799999999998765443333334433322110 011235555555554 2211134
Q ss_pred CCChhhh--hhhHHHHHHHHHHHHHHHHHc-CCCCCCcEEEEEeChHHHHHHHHHHhC----------CCcccEEEEccc
Q 002209 726 EGDEEAN--DRFVEQLVACAEAAVEEVVRR-GVAHPSKIAVGGHSYGAFMTANLLAHA----------PHLFCCGIARSG 792 (953)
Q Consensus 726 ~G~~~~~--~~~~~~~~~D~~~~~~~l~~~-~~~d~~~i~l~G~S~GG~~a~~~a~~~----------p~~~~a~v~~~~ 792 (953)
++..... .........|+.++++...++ +.....++.|+|+||||..+..++.+- .=.++++++..|
T Consensus 135 ~S~~~~~~~~~~~~~~a~d~~~~l~~f~~~~p~~~~~~~~i~GeSygG~y~p~~a~~i~~~n~~~~~~~inLkGi~IGNg 214 (462)
T PTZ00472 135 FSYADKADYDHNESEVSEDMYNFLQAFFGSHEDLRANDLFVVGESYGGHYAPATAYRINMGNKKGDGLYINLAGLAVGNG 214 (462)
T ss_pred cccCCCCCCCCChHHHHHHHHHHHHHHHHhCccccCCCEEEEeecchhhhHHHHHHHHHhhccccCCceeeeEEEEEecc
Confidence 3332211 122356778888888766543 444567999999999999887777541 013788888888
Q ss_pred CCC
Q 002209 793 AYN 795 (953)
Q Consensus 793 ~~d 795 (953)
..+
T Consensus 215 ~~d 217 (462)
T PTZ00472 215 LTD 217 (462)
T ss_pred ccC
Confidence 765
No 370
>KOG0303 consensus Actin-binding protein Coronin, contains WD40 repeats [Cytoskeleton]
Probab=97.05 E-value=0.057 Score=56.70 Aligned_cols=123 Identities=19% Similarity=0.251 Sum_probs=76.5
Q ss_pred CcccccccCCCCcEEEEEEecCCccccccCCCCCcceEEEecc-CceEEEeccCCCcccCCccccccccCccceeeccCC
Q 002209 332 AVYTSLDPSPDEKYILISSIHRPYSFIVPCGRFPRQVGVWTTD-GIFVRELCDLPLAEDIPIAFNSVRKGMRSINWRSDK 410 (953)
Q Consensus 332 ~~~~~~~~SpDG~~l~~~~~~~~~~~~~~~~~~~~~i~~~d~~-g~~~~~l~~~~~~~~~p~~~~~~~~~~~~~~wspDg 410 (953)
+.+-.++|+|=...++.+..+ ...|-+|.+- ++..+.++. +.. ...++...+.-++|.|--
T Consensus 82 ~~vLDi~w~PfnD~vIASgSe------------D~~v~vW~IPe~~l~~~lte-pvv-----~L~gH~rrVg~V~wHPtA 143 (472)
T KOG0303|consen 82 APVLDIDWCPFNDCVIASGSE------------DTKVMVWQIPENGLTRDLTE-PVV-----ELYGHQRRVGLVQWHPTA 143 (472)
T ss_pred ccccccccCccCCceeecCCC------------CceEEEEECCCcccccCccc-ceE-----EEeecceeEEEEeecccc
Confidence 667788999955544444322 2378888874 333333331 110 112333445568899977
Q ss_pred CCceEEEEeccCCCcccccccCCeEEEEecCCCCCCCceEEeecccccCCeeeccCCceEEEEEecccCceEEEEEcCCC
Q 002209 411 PSTLYWAETQDGGDAKVEVTPRDIIYTQQAEPVQGEGPEILHKLDLRYGGISWCDDSLALVYESWYKTRRTRTWVISPGS 490 (953)
Q Consensus 411 ~~i~~~~~~~~~~~~~~~~~~~~~l~~~d~~~~~g~~~~~l~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~l~~~d~~~ 490 (953)
..+++. .+..+.+.+|++ .+|.....|. +..-+.++.|+.||..|+.+..++ ++.++|..+
T Consensus 144 ~NVLls------------ag~Dn~v~iWnv--~tgeali~l~-hpd~i~S~sfn~dGs~l~TtckDK----kvRv~dpr~ 204 (472)
T KOG0303|consen 144 PNVLLS------------AGSDNTVSIWNV--GTGEALITLD-HPDMVYSMSFNRDGSLLCTTCKDK----KVRVIDPRR 204 (472)
T ss_pred hhhHhh------------ccCCceEEEEec--cCCceeeecC-CCCeEEEEEeccCCceeeeecccc----eeEEEcCCC
Confidence 665554 245678999997 2333333343 666678899999999999887554 677888877
Q ss_pred C
Q 002209 491 K 491 (953)
Q Consensus 491 ~ 491 (953)
+
T Consensus 205 ~ 205 (472)
T KOG0303|consen 205 G 205 (472)
T ss_pred C
Confidence 5
No 371
>PF15492 Nbas_N: Neuroblastoma-amplified sequence, N terminal
Probab=97.05 E-value=0.13 Score=52.37 Aligned_cols=36 Identities=19% Similarity=0.240 Sum_probs=27.7
Q ss_pred cccceEeccCCCeEEEEEeeccccCCCCcceEEEEECCCCceeec
Q 002209 190 KLNFVTWSQDGKHLAFSIRIDAEDSSSSKLRVWVADVDTGKARPL 234 (953)
Q Consensus 190 ~~~~~~wSPDG~~laf~~~~~~~~~~~~~~~l~~~d~~~g~~~~l 234 (953)
.-+..+||||+..|||+.. ...|.+.|+.|.+...+
T Consensus 45 QWRkl~WSpD~tlLa~a~S---------~G~i~vfdl~g~~lf~I 80 (282)
T PF15492_consen 45 QWRKLAWSPDCTLLAYAES---------TGTIRVFDLMGSELFVI 80 (282)
T ss_pred hheEEEECCCCcEEEEEcC---------CCeEEEEecccceeEEc
Confidence 4567899999999999663 66888889888665443
No 372
>PF05577 Peptidase_S28: Serine carboxypeptidase S28; InterPro: IPR008758 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This group of serine peptidases belong to MEROPS peptidase family S28 (clan SC). The predicted active site residues for members of this family and family S10 occur in the same order in the sequence: S, D, H. These serine proteases include several eukaryotic enzymes such as lysosomal Pro-X carboxypeptidase, dipeptidyl-peptidase II, and thymus-specific serine peptidase [, , , ].; GO: 0008236 serine-type peptidase activity, 0006508 proteolysis; PDB: 3N2Z_B 3JYH_A 3N0T_C.
Probab=97.02 E-value=0.003 Score=72.17 Aligned_cols=88 Identities=23% Similarity=0.115 Sum_probs=60.0
Q ss_pred HHHHHH-cCcEEEEcCCCCCCCCCChhhhh---------hhHHHHHHHHHHHHHHHHHcC-CCCCCcEEEEEeChHHHHH
Q 002209 705 VLLWLA-RGFAILGGPTTPIIGEGDEEAND---------RFVEQLVACAEAAVEEVVRRG-VAHPSKIAVGGHSYGAFMT 773 (953)
Q Consensus 705 ~~~la~-~G~~V~~~~~~~~~G~G~~~~~~---------~~~~~~~~D~~~~~~~l~~~~-~~d~~~i~l~G~S~GG~~a 773 (953)
...||+ .|-.|+.. -.+=||.|..-. -..++.+.|+...++++..+. ..+..+++++|.||||.+|
T Consensus 51 ~~~lA~~~~a~~v~l---EHRyYG~S~P~~~~s~~nL~yLt~~QALaD~a~F~~~~~~~~~~~~~~pwI~~GgSY~G~La 127 (434)
T PF05577_consen 51 MWELAKEFGALVVAL---EHRYYGKSQPFGDLSTENLRYLTSEQALADLAYFIRYVKKKYNTAPNSPWIVFGGSYGGALA 127 (434)
T ss_dssp HHHHHHHHTEEEEEE-----TTSTTB-TTGGGGGSTTTC-SHHHHHHHHHHHHHHHHHHTTTGCC--EEEEEETHHHHHH
T ss_pred HHHHHHHcCCcEEEe---ehhhhcCCCCccccchhhHHhcCHHHHHHHHHHHHHHHHHhhcCCCCCCEEEECCcchhHHH
Confidence 344564 46666663 334566664211 126788999999999998653 3455699999999999999
Q ss_pred HHHHHhCCCcccEEEEcccCCC
Q 002209 774 ANLLAHAPHLFCCGIARSGAYN 795 (953)
Q Consensus 774 ~~~a~~~p~~~~a~v~~~~~~d 795 (953)
+|+-.++|++|.|+++-++++.
T Consensus 128 aw~r~kyP~~~~ga~ASSapv~ 149 (434)
T PF05577_consen 128 AWFRLKYPHLFDGAWASSAPVQ 149 (434)
T ss_dssp HHHHHH-TTT-SEEEEET--CC
T ss_pred HHHHhhCCCeeEEEEeccceee
Confidence 9999999999999999888754
No 373
>KOG0269 consensus WD40 repeat-containing protein [Function unknown]
Probab=96.98 E-value=0.0093 Score=67.63 Aligned_cols=181 Identities=13% Similarity=0.171 Sum_probs=107.9
Q ss_pred eceEEEEccCCCCCCceeeeecCCCCC-cccceEeccCCCeEEEEEeeccccCCCCcceEEEEECCCCceeecccCCCcc
Q 002209 163 TGIGIHQLFPDGKLGQEIEIQGFPDGA-KLNFVTWSQDGKHLAFSIRIDAEDSSSSKLRVWVADVDTGKARPLFQSPDIY 241 (953)
Q Consensus 163 ~~i~i~~~~~~g~~~~~~~l~~~~~~~-~~~~~~wSPDG~~laf~~~~~~~~~~~~~~~l~~~d~~~g~~~~lt~~~~~~ 241 (953)
+.|.+||+.-. +..+.++.+.+.. .+..+.|++---.|+.+.. .++ -|-.+|+...+-...+.....
T Consensus 110 G~i~vWdlnk~---~rnk~l~~f~EH~Rs~~~ldfh~tep~iliSGS------QDg--~vK~~DlR~~~S~~t~~~nSE- 177 (839)
T KOG0269|consen 110 GVISVWDLNKS---IRNKLLTVFNEHERSANKLDFHSTEPNILISGS------QDG--TVKCWDLRSKKSKSTFRSNSE- 177 (839)
T ss_pred CcEEEEecCcc---ccchhhhHhhhhccceeeeeeccCCccEEEecC------CCc--eEEEEeeecccccccccccch-
Confidence 57899999432 2234444344333 7888999988878887553 334 444455555444444433222
Q ss_pred ccccccceEEecCCeEEEEEecCCCCCCCCCCCCCCCCceeecCCCccccchhhhhhcCCcchhhhhhhhccceEEEEEc
Q 002209 242 LNAIFDNFVWVNNSTLLVCTIPLLRGDPPKKPLVPLGPKMQSNEKRDIIQVRTFQDLLKDEYDEDLFDYYATTQLVLVSL 321 (953)
Q Consensus 242 ~~~~~~~~~wspDg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~l~~~~~ 321 (953)
.+..++|+|.-...|+++. ..+.|.++|+
T Consensus 178 ---SiRDV~fsp~~~~~F~s~~------------------------------------------------dsG~lqlWDl 206 (839)
T KOG0269|consen 178 ---SIRDVKFSPGYGNKFASIH------------------------------------------------DSGYLQLWDL 206 (839)
T ss_pred ---hhhceeeccCCCceEEEec------------------------------------------------CCceEEEeec
Confidence 2779999976554444411 1233445555
Q ss_pred ---CCceeEeCCC-CcccccccCCCCcEEEEEEecCCccccccCCCCCcceEEEeccCceEEEeccCCCcccCCcccccc
Q 002209 322 ---DGTVKEIGPP-AVYTSLDPSPDEKYILISSIHRPYSFIVPCGRFPRQVGVWTTDGIFVRELCDLPLAEDIPIAFNSV 397 (953)
Q Consensus 322 ---~g~~~~l~~~-~~~~~~~~SpDG~~l~~~~~~~~~~~~~~~~~~~~~i~~~d~~g~~~~~l~~~~~~~~~p~~~~~~ 397 (953)
..-.++++.. +.+.-..|+|++.+||....+ +.|.+|+..+...+.+...... .|
T Consensus 207 Rqp~r~~~k~~AH~GpV~c~nwhPnr~~lATGGRD-------------K~vkiWd~t~~~~~~~~tInTi--ap------ 265 (839)
T KOG0269|consen 207 RQPDRCEKKLTAHNGPVLCLNWHPNREWLATGGRD-------------KMVKIWDMTDSRAKPKHTINTI--AP------ 265 (839)
T ss_pred cCchhHHHHhhcccCceEEEeecCCCceeeecCCC-------------ccEEEEeccCCCccceeEEeec--ce------
Confidence 3334555555 778889999999999977633 3899999987665544332111 11
Q ss_pred ccCccceeeccCCCCceEEEEeccCCCcccccccCCeEEEEec
Q 002209 398 RKGMRSINWRSDKPSTLYWAETQDGGDAKVEVTPRDIIYTQQA 440 (953)
Q Consensus 398 ~~~~~~~~wspDg~~i~~~~~~~~~~~~~~~~~~~~~l~~~d~ 440 (953)
+..+.|.|+-+..+-. ........|++||+
T Consensus 266 ---v~rVkWRP~~~~hLAt----------csmv~dtsV~VWDv 295 (839)
T KOG0269|consen 266 ---VGRVKWRPARSYHLAT----------CSMVVDTSVHVWDV 295 (839)
T ss_pred ---eeeeeeccCccchhhh----------hhccccceEEEEee
Confidence 2458899998744332 11123457888886
No 374
>KOG1963 consensus WD40 repeat protein [General function prediction only]
Probab=96.97 E-value=0.17 Score=58.81 Aligned_cols=102 Identities=17% Similarity=0.144 Sum_probs=67.3
Q ss_pred CCCceecCCCCEEEEEecCCCCCccccccccceeceEEecCCCCCCcceeeeeceEEEEccC-CCCCCceeeeecCCCCC
Q 002209 111 LPALSFSPQRDKILFLKRRALPPLEELARPEEKLAGLRIDGKCNTRSRMSFYTGIGIHQLFP-DGKLGQEIEIQGFPDGA 189 (953)
Q Consensus 111 ~~~~~~SPDG~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~i~~~~~-~g~~~~~~~l~~~~~~~ 189 (953)
....++||.|+.+|..-.+ ++|.+|.--. ++..-..+.+.- +..
T Consensus 208 ~t~~~~spn~~~~Aa~d~d---------------------------------GrI~vw~d~~~~~~~~t~t~lHW--H~~ 252 (792)
T KOG1963|consen 208 ITCVALSPNERYLAAGDSD---------------------------------GRILVWRDFGSSDDSETCTLLHW--HHD 252 (792)
T ss_pred ceeEEeccccceEEEeccC---------------------------------CcEEEEeccccccccccceEEEe--ccc
Confidence 4457889999988877654 2456764311 122233455543 224
Q ss_pred cccceEeccCCCeEEEEEeeccccCCCCcceEEEEECCCCceeecccCCCccccccccceEEecCCeEEEEE
Q 002209 190 KLNFVTWSQDGKHLAFSIRIDAEDSSSSKLRVWVADVDTGKARPLFQSPDIYLNAIFDNFVWVNNSTLLVCT 261 (953)
Q Consensus 190 ~~~~~~wSPDG~~laf~~~~~~~~~~~~~~~l~~~d~~~g~~~~lt~~~~~~~~~~~~~~~wspDg~~l~~~ 261 (953)
.+...+||+||..|+- +.....|.+|.+++++.+-|-. +.+.+..+.|||||......
T Consensus 253 ~V~~L~fS~~G~~LlS---------GG~E~VLv~Wq~~T~~kqfLPR-----Lgs~I~~i~vS~ds~~~sl~ 310 (792)
T KOG1963|consen 253 EVNSLSFSSDGAYLLS---------GGREGVLVLWQLETGKKQFLPR-----LGSPILHIVVSPDSDLYSLV 310 (792)
T ss_pred ccceeEEecCCceEee---------cccceEEEEEeecCCCcccccc-----cCCeeEEEEEcCCCCeEEEE
Confidence 6889999999999887 3336677788888888444422 33447799999999876655
No 375
>PF12048 DUF3530: Protein of unknown function (DUF3530); InterPro: IPR022529 This family of proteins is functionally uncharacterised. This protein is found in bacteria. Proteins in this family are typically between 272 to 336 amino acids in length. These proteins are distantly related to alpa/beta hydrolases so they may act as enzymes.
Probab=96.97 E-value=0.073 Score=57.26 Aligned_cols=213 Identities=20% Similarity=0.188 Sum_probs=122.3
Q ss_pred EEEEEEcCCCcEEEEEEEcCCCCCCCCCCCccEEEEeCCCCCcCcCCCCcccCCCCCCCCccchHHHHHHHcCcEEEEcC
Q 002209 640 ELIKYQRKDGVQLSATLYLPPGYDPSKDGPLPCLFWSYPGEFKSKDAAGQVRGSPNEFPRIGSTSVLLWLARGFAILGGP 719 (953)
Q Consensus 640 ~~~~~~~~dg~~~~~~l~~P~~~~~~~~~~~P~vv~~hGg~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~G~~V~~~~ 719 (953)
|..++. .++.++ -.||+|... +.+.-+||++||.... -.+...-......|...|+..+...
T Consensus 63 e~~~L~-~~~~~f-laL~~~~~~----~~~~G~vIilp~~g~~------------~d~p~~i~~LR~~L~~~GW~Tlsit 124 (310)
T PF12048_consen 63 EVQWLQ-AGEERF-LALWRPANS----AKPQGAVIILPDWGEH------------PDWPGLIAPLRRELPDHGWATLSIT 124 (310)
T ss_pred hcEEee-cCCEEE-EEEEecccC----CCCceEEEEecCCCCC------------CCcHhHHHHHHHHhhhcCceEEEec
Confidence 334444 344444 457777642 2246789999983110 0111112234556888999999832
Q ss_pred CCCCC---------------CCCCh-----------------hhhhhhHHHHHHHHHHHHHHHHHcCCCCCCcEEEEEeC
Q 002209 720 TTPII---------------GEGDE-----------------EANDRFVEQLVACAEAAVEEVVRRGVAHPSKIAVGGHS 767 (953)
Q Consensus 720 ~~~~~---------------G~G~~-----------------~~~~~~~~~~~~D~~~~~~~l~~~~~~d~~~i~l~G~S 767 (953)
..+-. .-+.. .....+......-+.+++.++.+++. .+|.|+||.
T Consensus 125 ~P~~~~~~~p~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ari~Aa~~~~~~~~~---~~ivlIg~G 201 (310)
T PF12048_consen 125 LPDPAPPASPNRATEAEEVPSAGDQQLSQPSDEPSPASAQEAEAREAYEERLFARIEAAIAFAQQQGG---KNIVLIGHG 201 (310)
T ss_pred CCCcccccCCccCCCCCCCCCCCCCCcCCCCCCCccccccHhHHhHHHHHHHHHHHHHHHHHHHhcCC---ceEEEEEeC
Confidence 22200 00100 01112344556667777788877752 469999999
Q ss_pred hHHHHHHHHHHhCCC-cccEEEEcccCCCCCCCCcCcccccchhhhhHHHHHhcCcccccCCCCCcEEEEEeCCCCCCCC
Q 002209 768 YGAFMTANLLAHAPH-LFCCGIARSGAYNRTLTPFGFQNEDRTLWEATSTYVEMSPFMSANKLKKPILLVHGEEDNNSGT 846 (953)
Q Consensus 768 ~GG~~a~~~a~~~p~-~~~a~v~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~sp~~~~~~i~~P~Li~~G~~D~~v~~ 846 (953)
.|+++++.++...+. .+.+.|.+++...... ........+.+++.|+|=|++.. ....
T Consensus 202 ~gA~~~~~~la~~~~~~~daLV~I~a~~p~~~-------------------~n~~l~~~la~l~iPvLDi~~~~-~~~~- 260 (310)
T PF12048_consen 202 TGAGWAARYLAEKPPPMPDALVLINAYWPQPD-------------------RNPALAEQLAQLKIPVLDIYSAD-NPAS- 260 (310)
T ss_pred hhHHHHHHHHhcCCCcccCeEEEEeCCCCcch-------------------hhhhHHHHhhccCCCEEEEecCC-ChHH-
Confidence 999999999998763 4889999887422100 00112234567889999999887 3321
Q ss_pred chHHHHHHHHHHHhC-CCcEEEEEeCCCCccCCCcccHHHHHHHHHHHHHHh
Q 002209 847 LTMQSDRFFNALKGH-GALCRLVILPFESHGYAARESIMHVLWETDRWLQKY 897 (953)
Q Consensus 847 ~~~~~~~~~~~l~~~-g~~~~~~~~~~~~H~~~~~~~~~~~~~~i~~fl~~~ 897 (953)
...+.+-....+.+ ....+-+.+++..|..... ...+.++|..||.++
T Consensus 261 -~~~a~~R~~~a~r~~~~~YrQ~~L~~~~~~~~~~--~~~l~~rIrGWL~~~ 309 (310)
T PF12048_consen 261 -QQTAKQRKQAAKRNKKPDYRQIQLPGLPDNPSGW--QEQLLRRIRGWLKRH 309 (310)
T ss_pred -HHHHHHHHHHHHhccCCCceeEecCCCCCChhhH--HHHHHHHHHHHHHhh
Confidence 23333322333333 2446666777777755322 233888999999875
No 376
>KOG0268 consensus Sof1-like rRNA processing protein (contains WD40 repeats) [RNA processing and modification]
Probab=96.96 E-value=0.0023 Score=66.05 Aligned_cols=161 Identities=10% Similarity=0.120 Sum_probs=97.3
Q ss_pred ceEEEEccCCCCCCceeeeecCCCCC-cccceEeccCCCeEEEEEeeccccCCCCcceEEEEECCCCceeecccCCCccc
Q 002209 164 GIGIHQLFPDGKLGQEIEIQGFPDGA-KLNFVTWSQDGKHLAFSIRIDAEDSSSSKLRVWVADVDTGKARPLFQSPDIYL 242 (953)
Q Consensus 164 ~i~i~~~~~~g~~~~~~~l~~~~~~~-~~~~~~wSPDG~~laf~~~~~~~~~~~~~~~l~~~d~~~g~~~~lt~~~~~~~ 242 (953)
+|-|||..- ..++..+.-|. .+....++|--..|+-+.. .+..|+++|+..+.+.+-....-.
T Consensus 168 ~i~IWD~~R------~~Pv~smswG~Dti~svkfNpvETsILas~~--------sDrsIvLyD~R~~~Pl~KVi~~mR-- 231 (433)
T KOG0268|consen 168 QIDIWDEQR------DNPVSSMSWGADSISSVKFNPVETSILASCA--------SDRSIVLYDLRQASPLKKVILTMR-- 231 (433)
T ss_pred eeeeccccc------CCccceeecCCCceeEEecCCCcchheeeec--------cCCceEEEecccCCccceeeeecc--
Confidence 578888732 23333333333 5788899998877776542 366899999887765332111111
Q ss_pred cccccceEEecCCeEEEEEecCCCCCCCCCCCCCCCCceeecCCCccccchhhhhhcCCcchhhhhhhhccceEEEEEc-
Q 002209 243 NAIFDNFVWVNNSTLLVCTIPLLRGDPPKKPLVPLGPKMQSNEKRDIIQVRTFQDLLKDEYDEDLFDYYATTQLVLVSL- 321 (953)
Q Consensus 243 ~~~~~~~~wspDg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~l~~~~~- 321 (953)
...++|+|.+ ..|.+ .+ ....||.+|.
T Consensus 232 ---TN~IswnPea-fnF~~--------------------------------------a~----------ED~nlY~~DmR 259 (433)
T KOG0268|consen 232 ---TNTICWNPEA-FNFVA--------------------------------------AN----------EDHNLYTYDMR 259 (433)
T ss_pred ---ccceecCccc-cceee--------------------------------------cc----------ccccceehhhh
Confidence 3478999933 33333 11 2245777776
Q ss_pred C-CceeEeCCC--CcccccccCCCCcEEEEEEecCCccccccCCCCCcceEEEeccCceEEEeccCCCcccCCccccccc
Q 002209 322 D-GTVKEIGPP--AVYTSLDPSPDEKYILISSIHRPYSFIVPCGRFPRQVGVWTTDGIFVRELCDLPLAEDIPIAFNSVR 398 (953)
Q Consensus 322 ~-g~~~~l~~~--~~~~~~~~SpDG~~l~~~~~~~~~~~~~~~~~~~~~i~~~d~~g~~~~~l~~~~~~~~~p~~~~~~~ 398 (953)
. ..+..+..+ ..+.+++|||-|+-++..+.+ ..|.++.++.+.-+.+....- .
T Consensus 260 ~l~~p~~v~~dhvsAV~dVdfsptG~EfvsgsyD-------------ksIRIf~~~~~~SRdiYhtkR-----------M 315 (433)
T KOG0268|consen 260 NLSRPLNVHKDHVSAVMDVDFSPTGQEFVSGSYD-------------KSIRIFPVNHGHSRDIYHTKR-----------M 315 (433)
T ss_pred hhcccchhhcccceeEEEeccCCCcchhcccccc-------------ceEEEeecCCCcchhhhhHhh-----------h
Confidence 1 222233322 556789999999999877744 489999888665554443210 0
Q ss_pred cCccceeeccCCCCceEE
Q 002209 399 KGMRSINWRSDKPSTLYW 416 (953)
Q Consensus 399 ~~~~~~~wspDg~~i~~~ 416 (953)
..+..+.||.|.+.|+-.
T Consensus 316 q~V~~Vk~S~Dskyi~SG 333 (433)
T KOG0268|consen 316 QHVFCVKYSMDSKYIISG 333 (433)
T ss_pred heeeEEEEeccccEEEec
Confidence 123568999999966544
No 377
>KOG0308 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=96.95 E-value=0.011 Score=65.75 Aligned_cols=133 Identities=11% Similarity=0.029 Sum_probs=76.3
Q ss_pred eeEeCCC-Cccccccc-CCCCcEEEEEEecCCccccccCCCCCcceEEEeccCceEEEeccCCCcccCCccccccccCcc
Q 002209 325 VKEIGPP-AVYTSLDP-SPDEKYILISSIHRPYSFIVPCGRFPRQVGVWTTDGIFVRELCDLPLAEDIPIAFNSVRKGMR 402 (953)
Q Consensus 325 ~~~l~~~-~~~~~~~~-SpDG~~l~~~~~~~~~~~~~~~~~~~~~i~~~d~~g~~~~~l~~~~~~~~~p~~~~~~~~~~~ 402 (953)
...|... +++..++. -++...+|.. ++.++|++||++.+..+.+......... -...+...+++
T Consensus 110 ~stir~H~DYVkcla~~ak~~~lvaSg-------------GLD~~IflWDin~~~~~l~~s~n~~t~~-sl~sG~k~siY 175 (735)
T KOG0308|consen 110 MSTIRTHKDYVKCLAYIAKNNELVASG-------------GLDRKIFLWDINTGTATLVASFNNVTVN-SLGSGPKDSIY 175 (735)
T ss_pred HhhhhcccchheeeeecccCceeEEec-------------CCCccEEEEEccCcchhhhhhccccccc-cCCCCCcccee
Confidence 3344444 66666666 4454443333 3456999999996543222211100000 00002223445
Q ss_pred ceeeccCCCCceEEEEeccCCCcccccccCCeEEEEecCCCCCCCceEEeecccccCCeeeccCCceEEEEEecccCceE
Q 002209 403 SINWRSDKPSTLYWAETQDGGDAKVEVTPRDIIYTQQAEPVQGEGPEILHKLDLRYGGISWCDDSLALVYESWYKTRRTR 482 (953)
Q Consensus 403 ~~~wspDg~~i~~~~~~~~~~~~~~~~~~~~~l~~~d~~~~~g~~~~~l~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~ 482 (953)
+++-.+.|.-|+-. +-...|.+|| |....+.-.|.++..++..+..++||++++.++.+++. +
T Consensus 176 SLA~N~t~t~ivsG-------------gtek~lr~wD--prt~~kimkLrGHTdNVr~ll~~dDGt~~ls~sSDgtI--r 238 (735)
T KOG0308|consen 176 SLAMNQTGTIIVSG-------------GTEKDLRLWD--PRTCKKIMKLRGHTDNVRVLLVNDDGTRLLSASSDGTI--R 238 (735)
T ss_pred eeecCCcceEEEec-------------CcccceEEec--cccccceeeeeccccceEEEEEcCCCCeEeecCCCceE--E
Confidence 55555655322211 3345678888 56666777787888888889999999999988776644 7
Q ss_pred EEEEcC
Q 002209 483 TWVISP 488 (953)
Q Consensus 483 l~~~d~ 488 (953)
||-+..
T Consensus 239 lWdLgq 244 (735)
T KOG0308|consen 239 LWDLGQ 244 (735)
T ss_pred eeeccc
Confidence 776643
No 378
>KOG1332 consensus Vesicle coat complex COPII, subunit SEC13 [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.95 E-value=0.094 Score=51.68 Aligned_cols=69 Identities=10% Similarity=0.104 Sum_probs=40.6
Q ss_pred EeecccccCCeeeccCC----ceEEEEEecccCceEEEEEcCCCCCCCcEEeecCCCccccCCCCCCCeEeccCCCEEEE
Q 002209 451 LHKLDLRYGGISWCDDS----LALVYESWYKTRRTRTWVISPGSKDVAPRILFDRSSEDVYSDPGSPMMRRTSTGTYVIA 526 (953)
Q Consensus 451 l~~~~~~~~~~~~SpDg----~~l~~~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~SpDG~~l~~ 526 (953)
|..+..-++.++|+|.- .+|+..+.++ +--||..+.+.+.-+.+.+.+ ....++. ++||.-|..|+.
T Consensus 203 l~~H~dwVRDVAwaP~~gl~~s~iAS~SqDg--~viIwt~~~e~e~wk~tll~~-f~~~~w~------vSWS~sGn~LaV 273 (299)
T KOG1332|consen 203 LEGHKDWVRDVAWAPSVGLPKSTIASCSQDG--TVIIWTKDEEYEPWKKTLLEE-FPDVVWR------VSWSLSGNILAV 273 (299)
T ss_pred hhhcchhhhhhhhccccCCCceeeEEecCCC--cEEEEEecCccCccccccccc-CCcceEE------EEEeccccEEEE
Confidence 66666677889999973 2344444433 346788775543222233322 2222333 889999998887
Q ss_pred Ee
Q 002209 527 KI 528 (953)
Q Consensus 527 ~~ 528 (953)
..
T Consensus 274 s~ 275 (299)
T KOG1332|consen 274 SG 275 (299)
T ss_pred ec
Confidence 64
No 379
>KOG0264 consensus Nucleosome remodeling factor, subunit CAF1/NURF55/MSI1 [Chromatin structure and dynamics]
Probab=96.95 E-value=0.097 Score=56.10 Aligned_cols=226 Identities=15% Similarity=0.164 Sum_probs=124.3
Q ss_pred cCCCCEEEEEecC--CCCCccccccccceeceEEec-------CCCCCC-cceeeeeceEEEEccCCCCCC---cee-ee
Q 002209 117 SPQRDKILFLKRR--ALPPLEELARPEEKLAGLRID-------GKCNTR-SRMSFYTGIGIHQLFPDGKLG---QEI-EI 182 (953)
Q Consensus 117 SPDG~~la~~~~~--~~~~~~~~~~~~~~~~~~~~~-------~~~~~~-~~~~~~~~i~i~~~~~~g~~~---~~~-~l 182 (953)
+|.|.-++|-... +.+....-++|+..+.+..-. ....+. ...+..+.|.+||+...+... .++ -+
T Consensus 144 t~~~dv~Vfd~tk~~s~~~~~~~~~Pdl~L~gH~~eg~glsWn~~~~g~Lls~~~d~~i~lwdi~~~~~~~~~~~p~~~~ 223 (422)
T KOG0264|consen 144 TSSGDVYVFDYTKHPSKPKASGECRPDLRLKGHEKEGYGLSWNRQQEGTLLSGSDDHTICLWDINAESKEDKVVDPKTIF 223 (422)
T ss_pred CCCCCEEEEEeccCCCcccccccCCCceEEEeecccccccccccccceeEeeccCCCcEEEEeccccccCCccccceEEe
Confidence 7788878876554 222222245677666554431 111111 112223578999996544311 112 22
Q ss_pred ecCCCCCcccceEeccCCCeEEEEEeeccccCCCCcceEEEEECCCC--ceeecccCCCccccccccceEEecCCeEEEE
Q 002209 183 QGFPDGAKLNFVTWSQDGKHLAFSIRIDAEDSSSSKLRVWVADVDTG--KARPLFQSPDIYLNAIFDNFVWVNNSTLLVC 260 (953)
Q Consensus 183 ~~~~~~~~~~~~~wSPDG~~laf~~~~~~~~~~~~~~~l~~~d~~~g--~~~~lt~~~~~~~~~~~~~~~wspDg~~l~~ 260 (953)
.+ +...+...+|.|-.+.|+-... ....|.++|+.++ ++........ +.+..++|.|=+..|+.
T Consensus 224 ~~--h~~~VeDV~~h~~h~~lF~sv~--------dd~~L~iwD~R~~~~~~~~~~~ah~----~~vn~~~fnp~~~~ilA 289 (422)
T KOG0264|consen 224 SG--HEDVVEDVAWHPLHEDLFGSVG--------DDGKLMIWDTRSNTSKPSHSVKAHS----AEVNCVAFNPFNEFILA 289 (422)
T ss_pred ec--CCcceehhhccccchhhheeec--------CCCeEEEEEcCCCCCCCcccccccC----CceeEEEeCCCCCceEE
Confidence 22 2247888999996665543321 3667888888853 3333222222 22678899987776664
Q ss_pred EecCCCCCCCCCCCCCCCCceeecCCCccccchhhhhhcCCcchhhhhhhhccceEEEEEc---CCceeEeCCC-Ccccc
Q 002209 261 TIPLLRGDPPKKPLVPLGPKMQSNEKRDIIQVRTFQDLLKDEYDEDLFDYYATTQLVLVSL---DGTVKEIGPP-AVYTS 336 (953)
Q Consensus 261 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~l~~~~~---~g~~~~l~~~-~~~~~ 336 (953)
+.. ..+.+.++|+ ...+..+... ..+..
T Consensus 290 T~S------------------------------------------------~D~tV~LwDlRnL~~~lh~~e~H~dev~~ 321 (422)
T KOG0264|consen 290 TGS------------------------------------------------ADKTVALWDLRNLNKPLHTFEGHEDEVFQ 321 (422)
T ss_pred ecc------------------------------------------------CCCcEEEeechhcccCceeccCCCcceEE
Confidence 410 1234555565 3344444444 77889
Q ss_pred cccCCCCcEEEEEEecCCccccccCCCCCcceEEEeccCceEEEe--ccCCCcccCCccccccccCccceeeccCCCCce
Q 002209 337 LDPSPDEKYILISSIHRPYSFIVPCGRFPRQVGVWTTDGIFVREL--CDLPLAEDIPIAFNSVRKGMRSINWRSDKPSTL 414 (953)
Q Consensus 337 ~~~SpDG~~l~~~~~~~~~~~~~~~~~~~~~i~~~d~~g~~~~~l--~~~~~~~~~p~~~~~~~~~~~~~~wspDg~~i~ 414 (953)
+.|||.-+.|+.++. ..+.+.+||+..-...+. ....+..+.-+...+....+..+.|.|+-..++
T Consensus 322 V~WSPh~etvLASSg------------~D~rl~vWDls~ig~eq~~eda~dgppEllF~HgGH~~kV~DfsWnp~ePW~I 389 (422)
T KOG0264|consen 322 VEWSPHNETVLASSG------------TDRRLNVWDLSRIGEEQSPEDAEDGPPELLFIHGGHTAKVSDFSWNPNEPWTI 389 (422)
T ss_pred EEeCCCCCceeEecc------------cCCcEEEEeccccccccChhhhccCCcceeEEecCcccccccccCCCCCCeEE
Confidence 999999999887773 235889999973111111 111111111122335556677899999887655
Q ss_pred EE
Q 002209 415 YW 416 (953)
Q Consensus 415 ~~ 416 (953)
..
T Consensus 390 ~S 391 (422)
T KOG0264|consen 390 AS 391 (422)
T ss_pred EE
Confidence 44
No 380
>KOG4328 consensus WD40 protein [Function unknown]
Probab=96.93 E-value=0.12 Score=55.36 Aligned_cols=154 Identities=14% Similarity=0.126 Sum_probs=89.9
Q ss_pred CcccccccCCCCcE-EEEEEecCCccccccCCCCCcceEEEeccCceEEEeccCCCcccCCccccccccCccceeeccCC
Q 002209 332 AVYTSLDPSPDEKY-ILISSIHRPYSFIVPCGRFPRQVGVWTTDGIFVRELCDLPLAEDIPIAFNSVRKGMRSINWRSDK 410 (953)
Q Consensus 332 ~~~~~~~~SpDG~~-l~~~~~~~~~~~~~~~~~~~~~i~~~d~~g~~~~~l~~~~~~~~~p~~~~~~~~~~~~~~wspDg 410 (953)
+.++.+.|+|..-- |+.++ +.+.|.+.|+++.....+..... ......+..|+.+.
T Consensus 235 ~~Vs~l~F~P~n~s~i~ssS-------------yDGtiR~~D~~~~i~e~v~s~~~----------d~~~fs~~d~~~e~ 291 (498)
T KOG4328|consen 235 GPVSGLKFSPANTSQIYSSS-------------YDGTIRLQDFEGNISEEVLSLDT----------DNIWFSSLDFSAES 291 (498)
T ss_pred ccccceEecCCChhheeeec-------------cCceeeeeeecchhhHHHhhcCc----------cceeeeeccccCCC
Confidence 77889999995544 44444 24489999998776555544321 11233567788888
Q ss_pred CCceEEEEeccCCCcccccccCCeEEEEecCCCCCCCceEEeecccccCCeeeccCCceEEEEE-ecccCceEEEEEcCC
Q 002209 411 PSTLYWAETQDGGDAKVEVTPRDIIYTQQAEPVQGEGPEILHKLDLRYGGISWCDDSLALVYES-WYKTRRTRTWVISPG 489 (953)
Q Consensus 411 ~~i~~~~~~~~~~~~~~~~~~~~~l~~~d~~~~~g~~~~~l~~~~~~~~~~~~SpDg~~l~~~~-~~~~~~~~l~~~d~~ 489 (953)
..++|. +..+..-++|. ..++.+...+.-++..+.++++.|--.+++.++ .+++. +||.+.--
T Consensus 292 ~~vl~~-------------~~~G~f~~iD~-R~~~s~~~~~~lh~kKI~sv~~NP~~p~~laT~s~D~T~--kIWD~R~l 355 (498)
T KOG4328|consen 292 RSVLFG-------------DNVGNFNVIDL-RTDGSEYENLRLHKKKITSVALNPVCPWFLATASLDQTA--KIWDLRQL 355 (498)
T ss_pred ccEEEe-------------ecccceEEEEe-ecCCccchhhhhhhcccceeecCCCCchheeecccCcce--eeeehhhh
Confidence 877776 33444556665 234444445555566788999999887755544 44433 57765432
Q ss_pred CCCCCcEEeecCCCccccCCCCCCCeEeccCCCEEEEEeee
Q 002209 490 SKDVAPRILFDRSSEDVYSDPGSPMMRRTSTGTYVIAKIKK 530 (953)
Q Consensus 490 ~~~~~~~~~~~~~~~~~~~~~~~p~~~~SpDG~~l~~~~~~ 530 (953)
.+..++.+-+-.+...+.+ ..|||+|-.|+....+
T Consensus 356 ~~K~sp~lst~~HrrsV~s------AyFSPs~gtl~TT~~D 390 (498)
T KOG4328|consen 356 RGKASPFLSTLPHRRSVNS------AYFSPSGGTLLTTCQD 390 (498)
T ss_pred cCCCCcceecccccceeee------eEEcCCCCceEeeccC
Confidence 2211221212122222222 5699999888877643
No 381
>COG3490 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=96.90 E-value=0.41 Score=48.62 Aligned_cols=106 Identities=13% Similarity=0.135 Sum_probs=63.1
Q ss_pred ccceEeccCC-CeEEEEEeeccccCCCCcceEEEEECCCCceeecccCCCccccccccceEEecCCeEEEEEecCCCCCC
Q 002209 191 LNFVTWSQDG-KHLAFSIRIDAEDSSSSKLRVWVADVDTGKARPLFQSPDIYLNAIFDNFVWVNNSTLLVCTIPLLRGDP 269 (953)
Q Consensus 191 ~~~~~wSPDG-~~laf~~~~~~~~~~~~~~~l~~~d~~~g~~~~lt~~~~~~~~~~~~~~~wspDg~~l~~~~~~~~~~~ 269 (953)
....+++|-- +.++|.++. ..-.++.|.++++..++....+.+ .....-.|||||++||.+-
T Consensus 70 ~Hgi~~~p~~~ravafARrP--------Gtf~~vfD~~~~~~pv~~~s~~~R--HfyGHGvfs~dG~~LYATE------- 132 (366)
T COG3490 70 GHGIAFHPALPRAVAFARRP--------GTFAMVFDPNGAQEPVTLVSQEGR--HFYGHGVFSPDGRLLYATE------- 132 (366)
T ss_pred cCCeecCCCCcceEEEEecC--------CceEEEECCCCCcCcEEEecccCc--eeecccccCCCCcEEEeec-------
Confidence 3446667654 556666542 446678888887654433323221 1144677999999999761
Q ss_pred CCCCCCCCCCceeecCCCccccchhhhhhcCCcchhhhhhhhccceEEEEEcCCceeEeCCC----CcccccccCCCCcE
Q 002209 270 PKKPLVPLGPKMQSNEKRDIIQVRTFQDLLKDEYDEDLFDYYATTQLVLVSLDGTVKEIGPP----AVYTSLDPSPDEKY 345 (953)
Q Consensus 270 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~l~~~~~~g~~~~l~~~----~~~~~~~~SpDG~~ 345 (953)
+ ..|+ ..+-|-+||.....+++.+- -+...+.|.+||+.
T Consensus 133 --------------n-----------------dfd~------~rGViGvYd~r~~fqrvgE~~t~GiGpHev~lm~DGrt 175 (366)
T COG3490 133 --------------N-----------------DFDP------NRGVIGVYDAREGFQRVGEFSTHGIGPHEVTLMADGRT 175 (366)
T ss_pred --------------C-----------------CCCC------CCceEEEEecccccceecccccCCcCcceeEEecCCcE
Confidence 1 1110 34566777774334444332 34457899999999
Q ss_pred EEEEE
Q 002209 346 ILISS 350 (953)
Q Consensus 346 l~~~~ 350 (953)
|+...
T Consensus 176 lvvan 180 (366)
T COG3490 176 LVVAN 180 (366)
T ss_pred EEEeC
Confidence 98775
No 382
>PLN02733 phosphatidylcholine-sterol O-acyltransferase
Probab=96.88 E-value=0.0037 Score=70.06 Aligned_cols=87 Identities=14% Similarity=0.231 Sum_probs=61.5
Q ss_pred hHHHHHHHcCcEEEEcCCCCCCCCCChhhhhhhHHHHHHHHHHHHHHHHHcCCCCCCcEEEEEeChHHHHHHHHHHhCCC
Q 002209 703 TSVLLWLARGFAILGGPTTPIIGEGDEEANDRFVEQLVACAEAAVEEVVRRGVAHPSKIAVGGHSYGAFMTANLLAHAPH 782 (953)
Q Consensus 703 ~~~~~la~~G~~V~~~~~~~~~G~G~~~~~~~~~~~~~~D~~~~~~~l~~~~~~d~~~i~l~G~S~GG~~a~~~a~~~p~ 782 (953)
.....|.+.||.+ . .+..|+|.++.........+.++.+.++.+.+... ..++.|+||||||.++..++..+|+
T Consensus 112 ~li~~L~~~GY~~-~---~dL~g~gYDwR~~~~~~~~~~~Lk~lIe~~~~~~g--~~kV~LVGHSMGGlva~~fl~~~p~ 185 (440)
T PLN02733 112 DMIEQLIKWGYKE-G---KTLFGFGYDFRQSNRLPETMDGLKKKLETVYKASG--GKKVNIISHSMGGLLVKCFMSLHSD 185 (440)
T ss_pred HHHHHHHHcCCcc-C---CCcccCCCCccccccHHHHHHHHHHHHHHHHHHcC--CCCEEEEEECHhHHHHHHHHHHCCH
Confidence 4456788999977 3 34456665544333334556777777777765532 3689999999999999999988875
Q ss_pred c----ccEEEEcccCCC
Q 002209 783 L----FCCGIARSGAYN 795 (953)
Q Consensus 783 ~----~~a~v~~~~~~d 795 (953)
. ++..|++++.+.
T Consensus 186 ~~~k~I~~~I~la~P~~ 202 (440)
T PLN02733 186 VFEKYVNSWIAIAAPFQ 202 (440)
T ss_pred hHHhHhccEEEECCCCC
Confidence 3 678888887655
No 383
>COG3150 Predicted esterase [General function prediction only]
Probab=96.87 E-value=0.011 Score=54.82 Aligned_cols=136 Identities=14% Similarity=0.125 Sum_probs=73.9
Q ss_pred hHHHHHHHHHHHHHHHHHcCCCCCCcEEEEEeChHHHHHHHHHHhCCCcccEEEEcccCCCCCCCCcCccccc-----ch
Q 002209 735 FVEQLVACAEAAVEEVVRRGVAHPSKIAVGGHSYGAFMTANLLAHAPHLFCCGIARSGAYNRTLTPFGFQNED-----RT 809 (953)
Q Consensus 735 ~~~~~~~D~~~~~~~l~~~~~~d~~~i~l~G~S~GG~~a~~~a~~~p~~~~a~v~~~~~~d~~~~~~~~~~~~-----~~ 809 (953)
+.....+.+.+++..+. | ..++|+|.|.||+.|.|++.++ -+++++ +.|..-..-...++.... +.
T Consensus 41 ~p~~a~~ele~~i~~~~-----~-~~p~ivGssLGGY~At~l~~~~--Girav~-~NPav~P~e~l~gylg~~en~ytg~ 111 (191)
T COG3150 41 DPQQALKELEKAVQELG-----D-ESPLIVGSSLGGYYATWLGFLC--GIRAVV-FNPAVRPYELLTGYLGRPENPYTGQ 111 (191)
T ss_pred CHHHHHHHHHHHHHHcC-----C-CCceEEeecchHHHHHHHHHHh--CChhhh-cCCCcCchhhhhhhcCCCCCCCCcc
Confidence 34555555555543331 2 2489999999999999999887 366554 334322100000110000 01
Q ss_pred hh----hhHHHHHhcCcccccCCCCCc--EEEEEeCCCCCCCCchHHHHHHHHHHHhCCCcEEEEEeCCCCccCCCcccH
Q 002209 810 LW----EATSTYVEMSPFMSANKLKKP--ILLVHGEEDNNSGTLTMQSDRFFNALKGHGALCRLVILPFESHGYAARESI 883 (953)
Q Consensus 810 ~~----~~~~~~~~~sp~~~~~~i~~P--~Li~~G~~D~~v~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~H~~~~~~~~ 883 (953)
.| ...+... ...+..++.| +.++.-+.|++.+ +.++...|.... ..+..|.+|.|.. .
T Consensus 112 ~y~le~~hI~~l~----~~~~~~l~~p~~~~lL~qtgDEvLD--yr~a~a~y~~~~-------~~V~dgg~H~F~~---f 175 (191)
T COG3150 112 EYVLESRHIATLC----VLQFRELNRPRCLVLLSQTGDEVLD--YRQAVAYYHPCY-------EIVWDGGDHKFKG---F 175 (191)
T ss_pred eEEeehhhHHHHH----HhhccccCCCcEEEeecccccHHHH--HHHHHHHhhhhh-------heeecCCCccccc---h
Confidence 11 1111111 1223344444 3444555599877 777777766554 4467889999854 4
Q ss_pred HHHHHHHHHHHH
Q 002209 884 MHVLWETDRWLQ 895 (953)
Q Consensus 884 ~~~~~~i~~fl~ 895 (953)
...++.|..|..
T Consensus 176 ~~~l~~i~aF~g 187 (191)
T COG3150 176 SRHLQRIKAFKG 187 (191)
T ss_pred HHhHHHHHHHhc
Confidence 566778887753
No 384
>PF05705 DUF829: Eukaryotic protein of unknown function (DUF829); InterPro: IPR008547 This signature identifies Transmembrane protein 53, that have no known function but are predicted to be integral membrane proteins.
Probab=96.86 E-value=0.03 Score=58.32 Aligned_cols=64 Identities=13% Similarity=0.018 Sum_probs=56.1
Q ss_pred CCCCcEEEEEeCCCCCCCCchHHHHHHHHHHHhCCCcEEEEEeCCCCccCCCcccHHHHHHHHHHH
Q 002209 828 KLKKPILLVHGEEDNNSGTLTMQSDRFFNALKGHGALCRLVILPFESHGYAARESIMHVLWETDRW 893 (953)
Q Consensus 828 ~i~~P~Li~~G~~D~~v~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~H~~~~~~~~~~~~~~i~~f 893 (953)
...+|.|++.++.|.+++ ..+.+++.+..++.|.+++...|++.+|.-....+.+.+.+.+.+|
T Consensus 176 ~~~~p~lylYS~~D~l~~--~~~ve~~~~~~~~~G~~V~~~~f~~S~HV~H~r~~p~~Y~~~v~~f 239 (240)
T PF05705_consen 176 PSRCPRLYLYSKADPLIP--WRDVEEHAEEARRKGWDVRAEKFEDSPHVAHLRKHPDRYWRAVDEF 239 (240)
T ss_pred CCCCCeEEecCCCCcCcC--HHHHHHHHHHHHHcCCeEEEecCCCCchhhhcccCHHHHHHHHHhh
Confidence 346899999999999999 9999999999999999999999999999876677777777777766
No 385
>KOG0650 consensus WD40 repeat nucleolar protein Bop1, involved in ribosome biogenesis [Translation, ribosomal structure and biogenesis]
Probab=96.86 E-value=0.024 Score=62.52 Aligned_cols=266 Identities=14% Similarity=0.115 Sum_probs=135.0
Q ss_pred cccceEeccCCCeEEEEEeeccccCCCCcceEEEEECCCCceeecccCCCccccccccceEEecCCeE--EEEEecCCC-
Q 002209 190 KLNFVTWSQDGKHLAFSIRIDAEDSSSSKLRVWVADVDTGKARPLFQSPDIYLNAIFDNFVWVNNSTL--LVCTIPLLR- 266 (953)
Q Consensus 190 ~~~~~~wSPDG~~laf~~~~~~~~~~~~~~~l~~~d~~~g~~~~lt~~~~~~~~~~~~~~~wspDg~~--l~~~~~~~~- 266 (953)
.+...+-.|-|.+|+--+ ..+.|.+|.+.||.+.+.+..... +..++|.|.+.. |+++....-
T Consensus 402 ~Vr~iSvdp~G~wlasGs---------dDGtvriWEi~TgRcvr~~~~d~~-----I~~vaw~P~~~~~vLAvA~~~~~~ 467 (733)
T KOG0650|consen 402 LVRSISVDPSGEWLASGS---------DDGTVRIWEIATGRCVRTVQFDSE-----IRSVAWNPLSDLCVLAVAVGECVL 467 (733)
T ss_pred eEEEEEecCCcceeeecC---------CCCcEEEEEeecceEEEEEeecce-----eEEEEecCCCCceeEEEEecCceE
Confidence 577788889999998733 355666667778887665554443 789999998863 443321110
Q ss_pred CCCCCCCCCCCCCceeecCCCccccchhhhhhcCCcchhhhhhhhccceEEEEE----c-CCceeEeCCCCcccccccCC
Q 002209 267 GDPPKKPLVPLGPKMQSNEKRDIIQVRTFQDLLKDEYDEDLFDYYATTQLVLVS----L-DGTVKEIGPPAVYTSLDPSP 341 (953)
Q Consensus 267 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~l~~~~----~-~g~~~~l~~~~~~~~~~~Sp 341 (953)
...+.. |..+... ...+++....+...-+ ..-..|.-. + -|-...|..+..+..+.|..
T Consensus 468 ivnp~~-----G~~~e~~---------~t~ell~~~~~~~~p~--~~~~~W~~~~~~e~~~~v~~~I~~~k~i~~vtWHr 531 (733)
T KOG0650|consen 468 IVNPIF-----GDRLEVG---------PTKELLASAPNESEPD--AAVVTWSRASLDELEKGVCIVIKHPKSIRQVTWHR 531 (733)
T ss_pred EeCccc-----cchhhhc---------chhhhhhcCCCccCCc--ccceeechhhhhhhccceEEEEecCCccceeeeec
Confidence 000000 0000000 0000000000000000 111123222 1 12223444447788999999
Q ss_pred CCcEEEEEEecCCccccccCCCCCcceEEEeccCceEEEeccCCCcccCCccccccccCccceeeccCCCCceEEEEecc
Q 002209 342 DEKYILISSIHRPYSFIVPCGRFPRQVGVWTTDGIFVRELCDLPLAEDIPIAFNSVRKGMRSINWRSDKPSTLYWAETQD 421 (953)
Q Consensus 342 DG~~l~~~~~~~~~~~~~~~~~~~~~i~~~d~~g~~~~~l~~~~~~~~~p~~~~~~~~~~~~~~wspDg~~i~~~~~~~~ 421 (953)
+|.+|+.+..+. ....|.+.++...... .+.. ...+-+....|.|-...++..
T Consensus 532 kGDYlatV~~~~----------~~~~VliHQLSK~~sQ----~PF~--------kskG~vq~v~FHPs~p~lfVa----- 584 (733)
T KOG0650|consen 532 KGDYLATVMPDS----------GNKSVLIHQLSKRKSQ----SPFR--------KSKGLVQRVKFHPSKPYLFVA----- 584 (733)
T ss_pred CCceEEEeccCC----------CcceEEEEeccccccc----Cchh--------hcCCceeEEEecCCCceEEEE-----
Confidence 999999987433 2336777777632211 1110 111223356787765544333
Q ss_pred CCCcccccccCCeEEEEecCCCCCCCceEEeecccccCCeeeccCCceEEEEEecccCceEEEEEcCCCCCCCcEEeec-
Q 002209 422 GGDAKVEVTPRDIIYTQQAEPVQGEGPEILHKLDLRYGGISWCDDSLALVYESWYKTRRTRTWVISPGSKDVAPRILFD- 500 (953)
Q Consensus 422 ~~~~~~~~~~~~~l~~~d~~~~~g~~~~~l~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~l~~~d~~~~~~~~~~~~~- 500 (953)
....|.+||+ ....-.+.|..+...+..++.+|.|..|+..+..+ ++.++|++-.. ++.....
T Consensus 585 ---------Tq~~vRiYdL--~kqelvKkL~tg~kwiS~msihp~GDnli~gs~d~----k~~WfDldlss-kPyk~lr~ 648 (733)
T KOG0650|consen 585 ---------TQRSVRIYDL--SKQELVKKLLTGSKWISSMSIHPNGDNLILGSYDK----KMCWFDLDLSS-KPYKTLRL 648 (733)
T ss_pred ---------eccceEEEeh--hHHHHHHHHhcCCeeeeeeeecCCCCeEEEecCCC----eeEEEEcccCc-chhHHhhh
Confidence 2345778886 22222233444445577889999999998887654 66667766542 2222111
Q ss_pred --CCCccccCCCCCCC-eEeccCCCEEEEEe
Q 002209 501 --RSSEDVYSDPGSPM-MRRTSTGTYVIAKI 528 (953)
Q Consensus 501 --~~~~~~~~~~~~p~-~~~SpDG~~l~~~~ 528 (953)
.....+.....-|. -+-|+||..++|..
T Consensus 649 H~~avr~Va~H~ryPLfas~sdDgtv~Vfhg 679 (733)
T KOG0650|consen 649 HEKAVRSVAFHKRYPLFASGSDDGTVIVFHG 679 (733)
T ss_pred hhhhhhhhhhccccceeeeecCCCcEEEEee
Confidence 11112222222222 24578888887775
No 386
>PF07082 DUF1350: Protein of unknown function (DUF1350); InterPro: IPR010765 This family consists of several hypothetical proteins from both cyanobacteria and plants. Members of this family are typically around 250 residues in length. The function of this family is unknown but the species distribution indicates that the family may be involved in photosynthesis.
Probab=96.83 E-value=0.073 Score=53.60 Aligned_cols=154 Identities=18% Similarity=0.105 Sum_probs=83.9
Q ss_pred hHHHHHHHcCcEEEEcCCCCCCCCCChhhhhhhHHHHHHHHHHHHHHHHHcCCCCC--CcEEEEEeChHHHHHHHHHHhC
Q 002209 703 TSVLLWLARGFAILGGPTTPIIGEGDEEANDRFVEQLVACAEAAVEEVVRRGVAHP--SKIAVGGHSYGAFMTANLLAHA 780 (953)
Q Consensus 703 ~~~~~la~~G~~V~~~~~~~~~G~G~~~~~~~~~~~~~~D~~~~~~~l~~~~~~d~--~~i~l~G~S~GG~~a~~~a~~~ 780 (953)
...+.|+++||+|++.+|.- ++ .+.............+++.|.++...+. -+++=+|||+|.-+-+.+....
T Consensus 38 ~lLe~La~~Gy~ViAtPy~~--tf----DH~~~A~~~~~~f~~~~~~L~~~~~~~~~~lP~~~vGHSlGcklhlLi~s~~ 111 (250)
T PF07082_consen 38 YLLERLADRGYAVIATPYVV--TF----DHQAIAREVWERFERCLRALQKRGGLDPAYLPVYGVGHSLGCKLHLLIGSLF 111 (250)
T ss_pred HHHHHHHhCCcEEEEEecCC--CC----cHHHHHHHHHHHHHHHHHHHHHhcCCCcccCCeeeeecccchHHHHHHhhhc
Confidence 45566889999999955521 22 1112223334445566677776544333 3788899999999999888776
Q ss_pred CCcccEEEEcccCCCCC---CCCcC-------cccccchhhhhHHHHHhcCcccccCCCCCcEEEEEeCCCCCCCCchHH
Q 002209 781 PHLFCCGIARSGAYNRT---LTPFG-------FQNEDRTLWEATSTYVEMSPFMSANKLKKPILLVHGEEDNNSGTLTMQ 850 (953)
Q Consensus 781 p~~~~a~v~~~~~~d~~---~~~~~-------~~~~~~~~~~~~~~~~~~sp~~~~~~i~~P~Li~~G~~D~~v~~~~~~ 850 (953)
+..-++-|+++ +-|.. ..++. ..+....+.+......... .....|+|.=.+|. .++
T Consensus 112 ~~~r~gniliS-FNN~~a~~aIP~~~~l~~~l~~EF~PsP~ET~~li~~~Y-------~~~rnLLIkF~~D~-----iDq 178 (250)
T PF07082_consen 112 DVERAGNILIS-FNNFPADEAIPLLEQLAPALRLEFTPSPEETRRLIRESY-------QVRRNLLIKFNDDD-----IDQ 178 (250)
T ss_pred cCcccceEEEe-cCChHHHhhCchHhhhccccccCccCCHHHHHHHHHHhc-------CCccceEEEecCCC-----ccc
Confidence 43334445543 11100 00100 0011111222222222111 12335666666665 578
Q ss_pred HHHHHHHHHhCC-CcEEEEEeCCCCcc
Q 002209 851 SDRFFNALKGHG-ALCRLVILPFESHG 876 (953)
Q Consensus 851 ~~~~~~~l~~~g-~~~~~~~~~~~~H~ 876 (953)
+..+.+.|+... .-++.+..+| +|.
T Consensus 179 t~~L~~~L~~r~~~~~~~~~L~G-~HL 204 (250)
T PF07082_consen 179 TDELEQILQQRFPDMVSIQTLPG-NHL 204 (250)
T ss_pred hHHHHHHHhhhccccceEEeCCC-CCC
Confidence 888888888652 2356777886 885
No 387
>KOG0307 consensus Vesicle coat complex COPII, subunit SEC31 [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.82 E-value=0.013 Score=69.56 Aligned_cols=167 Identities=12% Similarity=0.145 Sum_probs=89.6
Q ss_pred CcccccccCCCCc-EEEEEEecCCccccccCCCCCcceEEEeccCceEEEeccCCCcccCCccccccccCccceeeccCC
Q 002209 332 AVYTSLDPSPDEK-YILISSIHRPYSFIVPCGRFPRQVGVWTTDGIFVRELCDLPLAEDIPIAFNSVRKGMRSINWRSDK 410 (953)
Q Consensus 332 ~~~~~~~~SpDG~-~l~~~~~~~~~~~~~~~~~~~~~i~~~d~~g~~~~~l~~~~~~~~~p~~~~~~~~~~~~~~wspDg 410 (953)
+.+..+.|.|.+. .||-..+ .++|++||++.-+ ...+.. .. .....+..++|.-.-
T Consensus 117 G~V~gLDfN~~q~nlLASGa~-------------~geI~iWDlnn~~-tP~~~~----~~-----~~~~eI~~lsWNrkv 173 (1049)
T KOG0307|consen 117 GPVLGLDFNPFQGNLLASGAD-------------DGEILIWDLNKPE-TPFTPG----SQ-----APPSEIKCLSWNRKV 173 (1049)
T ss_pred CceeeeeccccCCceeeccCC-------------CCcEEEeccCCcC-CCCCCC----CC-----CCcccceEeccchhh
Confidence 6778899999888 4444332 2499999998521 111110 00 001233456675544
Q ss_pred CCceEEEEeccCCCcccccccCCeEEEEecCCCCCCC-ceEEeec--ccccCCeeeccCCce-EEEEEeccc-CceEEEE
Q 002209 411 PSTLYWAETQDGGDAKVEVTPRDIIYTQQAEPVQGEG-PEILHKL--DLRYGGISWCDDSLA-LVYESWYKT-RRTRTWV 485 (953)
Q Consensus 411 ~~i~~~~~~~~~~~~~~~~~~~~~l~~~d~~~~~g~~-~~~l~~~--~~~~~~~~~SpDg~~-l~~~~~~~~-~~~~l~~ 485 (953)
+.|+-. .+..+...+||+ ...+ ...+... ...+..+.|.||... |+.+++++. -...+|.
T Consensus 174 qhILAS------------~s~sg~~~iWDl---r~~~pii~ls~~~~~~~~S~l~WhP~~aTql~~As~dd~~PviqlWD 238 (1049)
T KOG0307|consen 174 SHILAS------------GSPSGRAVIWDL---RKKKPIIKLSDTPGRMHCSVLAWHPDHATQLLVASGDDSAPVIQLWD 238 (1049)
T ss_pred hHHhhc------------cCCCCCceeccc---cCCCcccccccCCCccceeeeeeCCCCceeeeeecCCCCCceeEeec
Confidence 443322 133456778886 3222 2223333 234668999999765 555544432 2234554
Q ss_pred EcCCCCCCCcEEeecCCCccccCCCCCCCeEeccCCCEEEEEeeeccCCCcEEEEecCCCCCCCCCCeEEEEECCCCceE
Q 002209 486 ISPGSKDVAPRILFDRSSEDVYSDPGSPMMRRTSTGTYVIAKIKKENDEGTYILLNGNGATPEGNIPFLDLFDINTGSKE 565 (953)
Q Consensus 486 ~d~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~SpDG~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~d~~~~~~~ 565 (953)
+.-.+ .+..+...+...+.+ +.|.+.+..++..... ..++..|+.++|+..
T Consensus 239 lR~as---sP~k~~~~H~~Gils------lsWc~~D~~lllSsgk--------------------D~~ii~wN~~tgEvl 289 (1049)
T KOG0307|consen 239 LRFAS---SPLKILEGHQRGILS------LSWCPQDPRLLLSSGK--------------------DNRIICWNPNTGEVL 289 (1049)
T ss_pred ccccC---Cchhhhcccccceee------eccCCCCchhhhcccC--------------------CCCeeEecCCCceEe
Confidence 43332 344444444443433 7898888555544421 224889999988754
No 388
>KOG2110 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=96.76 E-value=0.014 Score=60.65 Aligned_cols=135 Identities=13% Similarity=0.134 Sum_probs=83.6
Q ss_pred ceEEEEEc-CCce-eEeC---CC-CcccccccCCCCcEEEEEEecCCccccccCCCCCcceEEEeccCce-EEEeccCCC
Q 002209 314 TQLVLVSL-DGTV-KEIG---PP-AVYTSLDPSPDEKYILISSIHRPYSFIVPCGRFPRQVGVWTTDGIF-VRELCDLPL 386 (953)
Q Consensus 314 ~~l~~~~~-~g~~-~~l~---~~-~~~~~~~~SpDG~~l~~~~~~~~~~~~~~~~~~~~~i~~~d~~g~~-~~~l~~~~~ 386 (953)
.+||++|+ +=++ ..|. .+ .+...+++++++.+|||-.... .++|.+||+.+-. ...+..+.
T Consensus 106 e~IyIydI~~MklLhTI~t~~~n~~gl~AlS~n~~n~ylAyp~s~t-----------~GdV~l~d~~nl~~v~~I~aH~- 173 (391)
T KOG2110|consen 106 ESIYIYDIKDMKLLHTIETTPPNPKGLCALSPNNANCYLAYPGSTT-----------SGDVVLFDTINLQPVNTINAHK- 173 (391)
T ss_pred ccEEEEecccceeehhhhccCCCccceEeeccCCCCceEEecCCCC-----------CceEEEEEcccceeeeEEEecC-
Confidence 45999998 5322 2221 12 4556667777788999876433 5699999997422 22333322
Q ss_pred cccCCccccccccCccceeeccCCCCceEEEEeccCCCcccccccCCeE-EEEecCCCCCCCceEEeec--ccccCCeee
Q 002209 387 AEDIPIAFNSVRKGMRSINWRSDKPSTLYWAETQDGGDAKVEVTPRDII-YTQQAEPVQGEGPEILHKL--DLRYGGISW 463 (953)
Q Consensus 387 ~~~~p~~~~~~~~~~~~~~wspDg~~i~~~~~~~~~~~~~~~~~~~~~l-~~~d~~~~~g~~~~~l~~~--~~~~~~~~~ 463 (953)
+..-.++|++||..||-. +.++.| .++.. .+|.+...+-.+ ...+.+++|
T Consensus 174 ------------~~lAalafs~~G~llATA-------------SeKGTVIRVf~v--~~G~kl~eFRRG~~~~~IySL~F 226 (391)
T KOG2110|consen 174 ------------GPLAALAFSPDGTLLATA-------------SEKGTVIRVFSV--PEGQKLYEFRRGTYPVSIYSLSF 226 (391)
T ss_pred ------------CceeEEEECCCCCEEEEe-------------ccCceEEEEEEc--CCccEeeeeeCCceeeEEEEEEE
Confidence 223468999999988766 445444 45553 344444444222 344567999
Q ss_pred ccCCceEEEEEecccCceEEEEEcCC
Q 002209 464 CDDSLALVYESWYKTRRTRTWVISPG 489 (953)
Q Consensus 464 SpDg~~l~~~~~~~~~~~~l~~~d~~ 489 (953)
|||+..|..+++.++. +++.++..
T Consensus 227 s~ds~~L~~sS~TeTV--HiFKL~~~ 250 (391)
T KOG2110|consen 227 SPDSQFLAASSNTETV--HIFKLEKV 250 (391)
T ss_pred CCCCCeEEEecCCCeE--EEEEeccc
Confidence 9999999988876654 67766643
No 389
>KOG4328 consensus WD40 protein [Function unknown]
Probab=96.74 E-value=0.54 Score=50.69 Aligned_cols=155 Identities=13% Similarity=0.059 Sum_probs=82.6
Q ss_pred CcccccccCCCCcEEEEEEecCCccccccCCCCCcceEEEecc--CceEEEeccCCCcccCCccccccccCccceeeccC
Q 002209 332 AVYTSLDPSPDEKYILISSIHRPYSFIVPCGRFPRQVGVWTTD--GIFVRELCDLPLAEDIPIAFNSVRKGMRSINWRSD 409 (953)
Q Consensus 332 ~~~~~~~~SpDG~~l~~~~~~~~~~~~~~~~~~~~~i~~~d~~--g~~~~~l~~~~~~~~~p~~~~~~~~~~~~~~wspD 409 (953)
..+.+..++.+...++|..+-+ ..-+||+. +++...+.-+. ..+.++++.|-
T Consensus 280 ~~fs~~d~~~e~~~vl~~~~~G-------------~f~~iD~R~~~s~~~~~~lh~-------------kKI~sv~~NP~ 333 (498)
T KOG4328|consen 280 IWFSSLDFSAESRSVLFGDNVG-------------NFNVIDLRTDGSEYENLRLHK-------------KKITSVALNPV 333 (498)
T ss_pred eeeeeccccCCCccEEEeeccc-------------ceEEEEeecCCccchhhhhhh-------------cccceeecCCC
Confidence 5677888998888888876332 55567765 43333332221 23456777776
Q ss_pred CCCceEEEEeccCCCcccccccCCeEEEEecCCCCCCCceEE--eecccccCCeeeccCCceEEEEEecccCceEEEEEc
Q 002209 410 KPSTLYWAETQDGGDAKVEVTPRDIIYTQQAEPVQGEGPEIL--HKLDLRYGGISWCDDSLALVYESWYKTRRTRTWVIS 487 (953)
Q Consensus 410 g~~i~~~~~~~~~~~~~~~~~~~~~l~~~d~~~~~g~~~~~l--~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~l~~~d 487 (953)
-...+.. .+.++.+-+||+....+...-.| ..+...+.+..|||+|..|+....++. .+||...
T Consensus 334 ~p~~laT------------~s~D~T~kIWD~R~l~~K~sp~lst~~HrrsV~sAyFSPs~gtl~TT~~D~~--IRv~dss 399 (498)
T KOG4328|consen 334 CPWFLAT------------ASLDQTAKIWDLRQLRGKASPFLSTLPHRRSVNSAYFSPSGGTLLTTCQDNE--IRVFDSS 399 (498)
T ss_pred Cchheee------------cccCcceeeeehhhhcCCCCcceecccccceeeeeEEcCCCCceEeeccCCc--eEEeecc
Confidence 6644333 13344566788633343331123 345667788999999888887765542 2555442
Q ss_pred -CCCCCCCcEEeecCCCccccCCCCCCCeEeccCCCEEEEEe
Q 002209 488 -PGSKDVAPRILFDRSSEDVYSDPGSPMMRRTSTGTYVIAKI 528 (953)
Q Consensus 488 -~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~SpDG~~l~~~~ 528 (953)
..........|.......-.-.+.. ..|.||-..++...
T Consensus 400 ~~sa~~~p~~~I~Hn~~t~RwlT~fK--A~W~P~~~li~vg~ 439 (498)
T KOG4328|consen 400 CISAKDEPLGTIPHNNRTGRWLTPFK--AAWDPDYNLIVVGR 439 (498)
T ss_pred cccccCCccceeeccCcccccccchh--heeCCCccEEEEec
Confidence 1122122233332222111111111 35888776665554
No 390
>KOG0292 consensus Vesicle coat complex COPI, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.73 E-value=0.56 Score=54.72 Aligned_cols=251 Identities=10% Similarity=0.119 Sum_probs=135.3
Q ss_pred cccceEeccCCCeEEEEEeeccccCCCCcceEEEEECCCCceeecccCCCccccccccceEEecCCeEEEEEecCCCCCC
Q 002209 190 KLNFVTWSQDGKHLAFSIRIDAEDSSSSKLRVWVADVDTGKARPLFQSPDIYLNAIFDNFVWVNNSTLLVCTIPLLRGDP 269 (953)
Q Consensus 190 ~~~~~~wSPDG~~laf~~~~~~~~~~~~~~~l~~~d~~~g~~~~lt~~~~~~~~~~~~~~~wspDg~~l~~~~~~~~~~~ 269 (953)
.+-..+|.|---||+..- .++.-+||-+.. |....-+...+ +.+..+.|.|++-.++..
T Consensus 11 RvKglsFHP~rPwILtsl-------HsG~IQlWDYRM--~tli~rFdeHd----GpVRgv~FH~~qplFVSG-------- 69 (1202)
T KOG0292|consen 11 RVKGLSFHPKRPWILTSL-------HSGVIQLWDYRM--GTLIDRFDEHD----GPVRGVDFHPTQPLFVSG-------- 69 (1202)
T ss_pred cccceecCCCCCEEEEee-------cCceeeeehhhh--hhHHhhhhccC----CccceeeecCCCCeEEec--------
Confidence 556688999889998854 344566665553 33322222222 238899999998777643
Q ss_pred CCCCCCCCCCceeecCCCccccchhhhhhcCCcchhhhhhhhccceEEEEEcCCceeEeCCC-CcccccccCCCCcEEEE
Q 002209 270 PKKPLVPLGPKMQSNEKRDIIQVRTFQDLLKDEYDEDLFDYYATTQLVLVSLDGTVKEIGPP-AVYTSLDPSPDEKYILI 348 (953)
Q Consensus 270 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~l~~~~~~g~~~~l~~~-~~~~~~~~SpDG~~l~~ 348 (953)
..| ..-.+|.|....-...|... +.++...|.+.=-||+.
T Consensus 70 --------------------------------GDD-------ykIkVWnYk~rrclftL~GHlDYVRt~~FHheyPWIlS 110 (1202)
T KOG0292|consen 70 --------------------------------GDD-------YKIKVWNYKTRRCLFTLLGHLDYVRTVFFHHEYPWILS 110 (1202)
T ss_pred --------------------------------CCc-------cEEEEEecccceehhhhccccceeEEeeccCCCceEEE
Confidence 111 11223333222223334444 78889999999999998
Q ss_pred EEecCCccccccCCCCCcceEEEeccC-ceEEEeccCCCcccCCccccccccCccceeeccCCCCceEEEEeccCCCccc
Q 002209 349 SSIHRPYSFIVPCGRFPRQVGVWTTDG-IFVRELCDLPLAEDIPIAFNSVRKGMRSINWRSDKPSTLYWAETQDGGDAKV 427 (953)
Q Consensus 349 ~~~~~~~~~~~~~~~~~~~i~~~d~~g-~~~~~l~~~~~~~~~p~~~~~~~~~~~~~~wspDg~~i~~~~~~~~~~~~~~ 427 (953)
.+.+. +|.+|+-.. +.+..++.+... +--.+|.|-...|+-.
T Consensus 111 ASDDQ-------------TIrIWNwqsr~~iavltGHnHY-------------VMcAqFhptEDlIVSa----------- 153 (1202)
T KOG0292|consen 111 ASDDQ-------------TIRIWNWQSRKCIAVLTGHNHY-------------VMCAQFHPTEDLIVSA----------- 153 (1202)
T ss_pred ccCCC-------------eEEEEeccCCceEEEEecCceE-------------EEeeccCCccceEEEe-----------
Confidence 88554 899998874 445556654321 1223455544433332
Q ss_pred ccccCCeEEEEecC--------CC---------------CCC--C-c-eEEeecccccCCeeeccCCceEEEEEecccCc
Q 002209 428 EVTPRDIIYTQQAE--------PV---------------QGE--G-P-EILHKLDLRYGGISWCDDSLALVYESWYKTRR 480 (953)
Q Consensus 428 ~~~~~~~l~~~d~~--------~~---------------~g~--~-~-~~l~~~~~~~~~~~~SpDg~~l~~~~~~~~~~ 480 (953)
+-...|.+||.. |. -|+ . . ..|.+++..++..+|.|---.|+..+.+ +.
T Consensus 154 --SLDQTVRVWDisGLRkk~~~pg~~e~~~~~~~~~~dLfg~~DaVVK~VLEGHDRGVNwaAfhpTlpliVSG~DD--Rq 229 (1202)
T KOG0292|consen 154 --SLDQTVRVWDISGLRKKNKAPGSLEDQMRGQQGNSDLFGQTDAVVKHVLEGHDRGVNWAAFHPTLPLIVSGADD--RQ 229 (1202)
T ss_pred --cccceEEEEeecchhccCCCCCCchhhhhccccchhhcCCcCeeeeeeecccccccceEEecCCcceEEecCCc--ce
Confidence 333345555531 00 000 0 0 1234556667777888866656655443 34
Q ss_pred eEEEEEcCCCCCCCcEE-eecCCCccccCCCCCCCeEeccCCCEEEEEeeeccCCCcEEEEecCCCCCCCCCCeEEEEEC
Q 002209 481 TRTWVISPGSKDVAPRI-LFDRSSEDVYSDPGSPMMRRTSTGTYVIAKIKKENDEGTYILLNGNGATPEGNIPFLDLFDI 559 (953)
Q Consensus 481 ~~l~~~d~~~~~~~~~~-~~~~~~~~~~~~~~~p~~~~SpDG~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~d~ 559 (953)
.+||+++...- -.+ .-..+...+.+ +-|.|.-..|+....+. .|.+||+
T Consensus 230 VKlWrmnetKa---WEvDtcrgH~nnVss------vlfhp~q~lIlSnsEDk---------------------sirVwDm 279 (1202)
T KOG0292|consen 230 VKLWRMNETKA---WEVDTCRGHYNNVSS------VLFHPHQDLILSNSEDK---------------------SIRVWDM 279 (1202)
T ss_pred eeEEEeccccc---eeehhhhcccCCcce------EEecCccceeEecCCCc---------------------cEEEEec
Confidence 58999874331 111 01122222222 45666555555444221 3889998
Q ss_pred CCCceEEEeccC
Q 002209 560 NTGSKERIWESD 571 (953)
Q Consensus 560 ~~~~~~~l~~~~ 571 (953)
......+.+..+
T Consensus 280 ~kRt~v~tfrre 291 (1202)
T KOG0292|consen 280 TKRTSVQTFRRE 291 (1202)
T ss_pred ccccceeeeecc
Confidence 766655555444
No 391
>KOG0285 consensus Pleiotropic regulator 1 [RNA processing and modification]
Probab=96.73 E-value=0.2 Score=52.13 Aligned_cols=181 Identities=12% Similarity=0.070 Sum_probs=111.4
Q ss_pred CcccceEeccCCCeEEEEEeeccccCCCCcceEEEEECCCCceee-cccCCCccccccccceEEecCCeEEEEEecCCCC
Q 002209 189 AKLNFVTWSQDGKHLAFSIRIDAEDSSSSKLRVWVADVDTGKARP-LFQSPDIYLNAIFDNFVWVNNSTLLVCTIPLLRG 267 (953)
Q Consensus 189 ~~~~~~~wSPDG~~laf~~~~~~~~~~~~~~~l~~~d~~~g~~~~-lt~~~~~~~~~~~~~~~wspDg~~l~~~~~~~~~ 267 (953)
+++..+.+-|-.+|++. +..+..+-++|+++|+... |+.+-. .+..+++|+---++|...
T Consensus 152 gWVr~vavdP~n~wf~t---------gs~DrtikIwDlatg~LkltltGhi~-----~vr~vavS~rHpYlFs~g----- 212 (460)
T KOG0285|consen 152 GWVRSVAVDPGNEWFAT---------GSADRTIKIWDLATGQLKLTLTGHIE-----TVRGVAVSKRHPYLFSAG----- 212 (460)
T ss_pred ceEEEEeeCCCceeEEe---------cCCCceeEEEEcccCeEEEeecchhh-----eeeeeeecccCceEEEec-----
Confidence 47888999998888776 3456788899999998643 332222 267888998877887651
Q ss_pred CCCCCCCCCCCCceeecCCCccccchhhhhhcCCcchhhhhhhhccceEEEEEc-CCceeE-eCCC-CcccccccCCCCc
Q 002209 268 DPPKKPLVPLGPKMQSNEKRDIIQVRTFQDLLKDEYDEDLFDYYATTQLVLVSL-DGTVKE-IGPP-AVYTSLDPSPDEK 344 (953)
Q Consensus 268 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~l~~~~~-~g~~~~-l~~~-~~~~~~~~SpDG~ 344 (953)
...++--+|+ ..+.-+ .... ..+..++..|--.
T Consensus 213 --------------------------------------------edk~VKCwDLe~nkvIR~YhGHlS~V~~L~lhPTld 248 (460)
T KOG0285|consen 213 --------------------------------------------EDKQVKCWDLEYNKVIRHYHGHLSGVYCLDLHPTLD 248 (460)
T ss_pred --------------------------------------------CCCeeEEEechhhhhHHHhccccceeEEEeccccce
Confidence 1134445566 333222 2222 5566777788666
Q ss_pred EEEEEEecCCccccccCCCCCcceEEEeccCce-EEEeccCCCcccCCccccccccCccceeeccCCCCceEEEEeccCC
Q 002209 345 YILISSIHRPYSFIVPCGRFPRQVGVWTTDGIF-VRELCDLPLAEDIPIAFNSVRKGMRSINWRSDKPSTLYWAETQDGG 423 (953)
Q Consensus 345 ~l~~~~~~~~~~~~~~~~~~~~~i~~~d~~g~~-~~~l~~~~~~~~~p~~~~~~~~~~~~~~wspDg~~i~~~~~~~~~~ 423 (953)
.|+..+.+ ..+.+||+.+.. +..+..+.. -+.++.+.|-...++-.
T Consensus 249 vl~t~grD-------------st~RvWDiRtr~~V~~l~GH~~-------------~V~~V~~~~~dpqvit~------- 295 (460)
T KOG0285|consen 249 VLVTGGRD-------------STIRVWDIRTRASVHVLSGHTN-------------PVASVMCQPTDPQVITG------- 295 (460)
T ss_pred eEEecCCc-------------ceEEEeeecccceEEEecCCCC-------------cceeEEeecCCCceEEe-------
Confidence 66655433 388999998654 333443321 12334444433333332
Q ss_pred CcccccccCCeEEEEecCCCCCCCceEEeecccccCCeeeccCCceEEEE
Q 002209 424 DAKVEVTPRDIIYTQQAEPVQGEGPEILHKLDLRYGGISWCDDSLALVYE 473 (953)
Q Consensus 424 ~~~~~~~~~~~l~~~d~~~~~g~~~~~l~~~~~~~~~~~~SpDg~~l~~~ 473 (953)
+.+..|.+||+ ..|.....++.+...+..+...|+-..++.+
T Consensus 296 ------S~D~tvrlWDl--~agkt~~tlt~hkksvral~lhP~e~~fASa 337 (460)
T KOG0285|consen 296 ------SHDSTVRLWDL--RAGKTMITLTHHKKSVRALCLHPKENLFASA 337 (460)
T ss_pred ------cCCceEEEeee--ccCceeEeeecccceeeEEecCCchhhhhcc
Confidence 44567889997 5566666788888888888888876654444
No 392
>KOG1408 consensus WD40 repeat protein [Function unknown]
Probab=96.71 E-value=0.019 Score=64.38 Aligned_cols=117 Identities=12% Similarity=0.093 Sum_probs=72.3
Q ss_pred CcccccccCCCCcEEEEEEecCCccccccCCCCCcceEEEeccC-ceEEEeccCCCcccCCccccccccCccceeeccCC
Q 002209 332 AVYTSLDPSPDEKYILISSIHRPYSFIVPCGRFPRQVGVWTTDG-IFVRELCDLPLAEDIPIAFNSVRKGMRSINWRSDK 410 (953)
Q Consensus 332 ~~~~~~~~SpDG~~l~~~~~~~~~~~~~~~~~~~~~i~~~d~~g-~~~~~l~~~~~~~~~p~~~~~~~~~~~~~~wspDg 410 (953)
.....++..|.-|+++....++ +|.++++.. ++.+........++.++ .+...|.|
T Consensus 597 tTlYDm~Vdp~~k~v~t~cQDr-------------nirif~i~sgKq~k~FKgs~~~eG~lI----------Kv~lDPSg 653 (1080)
T KOG1408|consen 597 TTLYDMAVDPTSKLVVTVCQDR-------------NIRIFDIESGKQVKSFKGSRDHEGDLI----------KVILDPSG 653 (1080)
T ss_pred ceEEEeeeCCCcceEEEEeccc-------------ceEEEeccccceeeeecccccCCCceE----------EEEECCCc
Confidence 3455678889999999888665 999999984 44444443322222222 34455555
Q ss_pred CCceEEEEeccCCCcccccccCCeEEEEecCCCCCCCceEEeecccccCCeeeccCCceEEEEEecccCceEEEEEcC
Q 002209 411 PSTLYWAETQDGGDAKVEVTPRDIIYTQQAEPVQGEGPEILHKLDLRYGGISWCDDSLALVYESWYKTRRTRTWVISP 488 (953)
Q Consensus 411 ~~i~~~~~~~~~~~~~~~~~~~~~l~~~d~~~~~g~~~~~l~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~l~~~d~ 488 (953)
-+|+-. -....|-++|. ..|.-..+.+.+...+.++.|++|=|.|+..+.++ -.-+|.+..
T Consensus 654 iY~atS-------------csdktl~~~Df--~sgEcvA~m~GHsE~VTG~kF~nDCkHlISvsgDg--CIFvW~lp~ 714 (1080)
T KOG1408|consen 654 IYLATS-------------CSDKTLCFVDF--VSGECVAQMTGHSEAVTGVKFLNDCKHLISVSGDG--CIFVWKLPL 714 (1080)
T ss_pred cEEEEe-------------ecCCceEEEEe--ccchhhhhhcCcchheeeeeecccchhheeecCCc--eEEEEECch
Confidence 433322 12335677775 34444455677788889999999999988776443 234565554
No 393
>KOG0647 consensus mRNA export protein (contains WD40 repeats) [RNA processing and modification]
Probab=96.70 E-value=0.9 Score=46.51 Aligned_cols=113 Identities=15% Similarity=0.287 Sum_probs=71.5
Q ss_pred cccceEeccCCCeEEEEEeeccccCCCCcceEEEEECCCCceee--cccCCCccccccccceEEecCCeEEEEEecCCCC
Q 002209 190 KLNFVTWSQDGKHLAFSIRIDAEDSSSSKLRVWVADVDTGKARP--LFQSPDIYLNAIFDNFVWVNNSTLLVCTIPLLRG 267 (953)
Q Consensus 190 ~~~~~~wSPDG~~laf~~~~~~~~~~~~~~~l~~~d~~~g~~~~--lt~~~~~~~~~~~~~~~wspDg~~l~~~~~~~~~ 267 (953)
.++.++|||..+.++-... -++..++|-+... |.... ... +++.+-.+.|+.||..++...
T Consensus 29 sIS~l~FSP~~~~~~~A~S------WD~tVR~wevq~~-g~~~~ka~~~-----~~~PvL~v~WsddgskVf~g~----- 91 (347)
T KOG0647|consen 29 SISALAFSPQADNLLAAGS------WDGTVRIWEVQNS-GQLVPKAQQS-----HDGPVLDVCWSDDGSKVFSGG----- 91 (347)
T ss_pred chheeEeccccCceEEecc------cCCceEEEEEecC-Ccccchhhhc-----cCCCeEEEEEccCCceEEeec-----
Confidence 6889999995544444332 3356667766644 33221 111 222266899999998888651
Q ss_pred CCCCCCCCCCCCceeecCCCccccchhhhhhcCCcchhhhhhhhccceEEEEEc-CCceeEeCCC-CcccccccCCCCc-
Q 002209 268 DPPKKPLVPLGPKMQSNEKRDIIQVRTFQDLLKDEYDEDLFDYYATTQLVLVSL-DGTVKEIGPP-AVYTSLDPSPDEK- 344 (953)
Q Consensus 268 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~l~~~~~-~g~~~~l~~~-~~~~~~~~SpDG~- 344 (953)
...++-.+|+ +|++..+... +.+....|-+-..
T Consensus 92 --------------------------------------------~Dk~~k~wDL~S~Q~~~v~~Hd~pvkt~~wv~~~~~ 127 (347)
T KOG0647|consen 92 --------------------------------------------CDKQAKLWDLASGQVSQVAAHDAPVKTCHWVPGMNY 127 (347)
T ss_pred --------------------------------------------cCCceEEEEccCCCeeeeeecccceeEEEEecCCCc
Confidence 2245667788 8888888776 7777777776555
Q ss_pred -EEEEEEecCCccccccCCCCCcceEEEeccCc
Q 002209 345 -YILISSIHRPYSFIVPCGRFPRQVGVWTTDGI 376 (953)
Q Consensus 345 -~l~~~~~~~~~~~~~~~~~~~~~i~~~d~~g~ 376 (953)
.|+..+ +.+.|..||....
T Consensus 128 ~cl~TGS-------------WDKTlKfWD~R~~ 147 (347)
T KOG0647|consen 128 QCLVTGS-------------WDKTLKFWDTRSS 147 (347)
T ss_pred ceeEecc-------------cccceeecccCCC
Confidence 333333 5568999998743
No 394
>PF06977 SdiA-regulated: SdiA-regulated; InterPro: IPR009722 This entry represents a conserved region approximately 100 residues long within a number of hypothetical bacterial proteins that may be regulated by SdiA, a member of the LuxR family of transcriptional regulators []. Some proteins contain the IPR001258 from INTERPRO repeat.; PDB: 3QQZ_A.
Probab=96.67 E-value=0.2 Score=51.62 Aligned_cols=58 Identities=12% Similarity=0.125 Sum_probs=37.7
Q ss_pred cccceEeccCCCeEEEEEeeccccCCCCcceEEEEECCCCceeecccCCCccccccccceEEecCCeEEE
Q 002209 190 KLNFVTWSQDGKHLAFSIRIDAEDSSSSKLRVWVADVDTGKARPLFQSPDIYLNAIFDNFVWVNNSTLLV 259 (953)
Q Consensus 190 ~~~~~~wSPDG~~laf~~~~~~~~~~~~~~~l~~~d~~~g~~~~lt~~~~~~~~~~~~~~~wspDg~~l~ 259 (953)
.++..+|.||.++|+.+.+ +...|+.++.+|.-.+++.-.+... .+.+++..+|+.++
T Consensus 23 e~SGLTy~pd~~tLfaV~d--------~~~~i~els~~G~vlr~i~l~g~~D----~EgI~y~g~~~~vl 80 (248)
T PF06977_consen 23 ELSGLTYNPDTGTLFAVQD--------EPGEIYELSLDGKVLRRIPLDGFGD----YEGITYLGNGRYVL 80 (248)
T ss_dssp -EEEEEEETTTTEEEEEET--------TTTEEEEEETT--EEEEEE-SS-SS----EEEEEE-STTEEEE
T ss_pred CccccEEcCCCCeEEEEEC--------CCCEEEEEcCCCCEEEEEeCCCCCC----ceeEEEECCCEEEE
Confidence 4889999999999887653 4678999998765555543222111 66888888886555
No 395
>KOG4840 consensus Predicted hydrolases or acyltransferases (alpha/beta hydrolase superfamily) [General function prediction only]
Probab=96.65 E-value=0.082 Score=51.33 Aligned_cols=88 Identities=14% Similarity=0.121 Sum_probs=66.3
Q ss_pred hHHHHHHHcCcEEEEcCCCC-CCCCCChhhhhhhHHHHHHHHHHHHHHHHHcCCCCCCcEEEEEeChHHHHHHHHHHh--
Q 002209 703 TSVLLWLARGFAILGGPTTP-IIGEGDEEANDRFVEQLVACAEAAVEEVVRRGVAHPSKIAVGGHSYGAFMTANLLAH-- 779 (953)
Q Consensus 703 ~~~~~la~~G~~V~~~~~~~-~~G~G~~~~~~~~~~~~~~D~~~~~~~l~~~~~~d~~~i~l~G~S~GG~~a~~~a~~-- 779 (953)
....++.+.+|..+.+..+. +.|+|.. ...+..+|+..+++++...+. .+.|.++|||-|..=.++++.+
T Consensus 57 ~L~~~lde~~wslVq~q~~Ssy~G~Gt~-----slk~D~edl~~l~~Hi~~~~f--St~vVL~GhSTGcQdi~yYlTnt~ 129 (299)
T KOG4840|consen 57 MLNRYLDENSWSLVQPQLRSSYNGYGTF-----SLKDDVEDLKCLLEHIQLCGF--STDVVLVGHSTGCQDIMYYLTNTT 129 (299)
T ss_pred HHHHHHhhccceeeeeeccccccccccc-----cccccHHHHHHHHHHhhccCc--ccceEEEecCccchHHHHHHHhcc
Confidence 44567788999998855433 3566654 245678899999998866543 3489999999999998888853
Q ss_pred CCCcccEEEEcccCCCCC
Q 002209 780 APHLFCCGIARSGAYNRT 797 (953)
Q Consensus 780 ~p~~~~a~v~~~~~~d~~ 797 (953)
.|..++|+|+.+|++|..
T Consensus 130 ~~r~iraaIlqApVSDrE 147 (299)
T KOG4840|consen 130 KDRKIRAAILQAPVSDRE 147 (299)
T ss_pred chHHHHHHHHhCccchhh
Confidence 235689999999999866
No 396
>TIGR02171 Fb_sc_TIGR02171 Fibrobacter succinogenes paralogous family TIGR02171. This model describes a paralogous family of the rumen bacterium Fibrobacter succinogenes. Eleven members are found in Fibrobacter succinogenes S85, averaging over 900 amino acids in length. More than half are predicted lipoproteins. The function is unknown.
Probab=96.64 E-value=0.22 Score=59.25 Aligned_cols=128 Identities=12% Similarity=0.123 Sum_probs=79.2
Q ss_pred cEEEEEEecCCccccccCCCCCcceEEEeccCceEEEe-ccCCCcccCCccccccccCccceeeccCCCCceEEEEeccC
Q 002209 344 KYILISSIHRPYSFIVPCGRFPRQVGVWTTDGIFVREL-CDLPLAEDIPIAFNSVRKGMRSINWRSDKPSTLYWAETQDG 422 (953)
Q Consensus 344 ~~l~~~~~~~~~~~~~~~~~~~~~i~~~d~~g~~~~~l-~~~~~~~~~p~~~~~~~~~~~~~~wspDg~~i~~~~~~~~~ 422 (953)
.+|||+... +++|.+.|.+|...+.+ ..... -+.++.|||||+.|+|.+....
T Consensus 319 tkiAfv~~~------------~~~L~~~D~dG~n~~~ve~~~~~-------------~i~sP~~SPDG~~vAY~ts~e~- 372 (912)
T TIGR02171 319 AKLAFRNDV------------TGNLAYIDYTKGASRAVEIEDTI-------------SVYHPDISPDGKKVAFCTGIEG- 372 (912)
T ss_pred eeEEEEEcC------------CCeEEEEecCCCCceEEEecCCC-------------ceecCcCCCCCCEEEEEEeecC-
Confidence 358888732 23899999999887766 33221 1246889999999999422211
Q ss_pred CCcccccccCCeEEEEecCCCCCCCceEEeecccccCCeeeccCCce-EEEEEeccc-------CceEEEEEcCCCCC-C
Q 002209 423 GDAKVEVTPRDIIYTQQAEPVQGEGPEILHKLDLRYGGISWCDDSLA-LVYESWYKT-------RRTRTWVISPGSKD-V 493 (953)
Q Consensus 423 ~~~~~~~~~~~~l~~~d~~~~~g~~~~~l~~~~~~~~~~~~SpDg~~-l~~~~~~~~-------~~~~l~~~d~~~~~-~ 493 (953)
+.++..||+.++ ...+.....|.-....+..-...+.|.. |+|.+..++ .....|.+.-..|. +
T Consensus 373 ------~~g~s~vYv~~L-~t~~~~~vkl~ve~aaiprwrv~e~gdt~ivyv~~a~nn~d~~~~~~~stw~v~f~~gkfg 445 (912)
T TIGR02171 373 ------LPGKSSVYVRNL-NASGSGLVKLPVENAAIPRWRVLENGDTVIVYVSDASNNKDDATFAAYSTWQVPFANGKFG 445 (912)
T ss_pred ------CCCCceEEEEeh-hccCCCceEeecccccccceEecCCCCeEEEEEcCCCCCcchhhhhhcceEEEEecCCCCC
Confidence 124567999998 3344455555444444444455677766 777764322 12357888876654 5
Q ss_pred CcEEeecCCCc
Q 002209 494 APRILFDRSSE 504 (953)
Q Consensus 494 ~~~~~~~~~~~ 504 (953)
+|+.+++..+.
T Consensus 446 ~p~kl~dga~h 456 (912)
T TIGR02171 446 TPKKLFDGAYH 456 (912)
T ss_pred Cchhhhccccc
Confidence 67777776543
No 397
>KOG1963 consensus WD40 repeat protein [General function prediction only]
Probab=96.62 E-value=0.79 Score=53.52 Aligned_cols=114 Identities=17% Similarity=0.132 Sum_probs=70.8
Q ss_pred ccccccCCCCcEEEEEEecCCccccccCCCCCcceEEEeccCceEEEeccCCCcccCCccccccccCccceeeccCCCCc
Q 002209 334 YTSLDPSPDEKYILISSIHRPYSFIVPCGRFPRQVGVWTTDGIFVRELCDLPLAEDIPIAFNSVRKGMRSINWRSDKPST 413 (953)
Q Consensus 334 ~~~~~~SpDG~~l~~~~~~~~~~~~~~~~~~~~~i~~~d~~g~~~~~l~~~~~~~~~p~~~~~~~~~~~~~~wspDg~~i 413 (953)
.+-.++||.|+++|....++ .|.+|.--+.+-. ...+..+..+...+..++||+||..|
T Consensus 208 ~t~~~~spn~~~~Aa~d~dG-------------rI~vw~d~~~~~~--------~~t~t~lHWH~~~V~~L~fS~~G~~L 266 (792)
T KOG1963|consen 208 ITCVALSPNERYLAAGDSDG-------------RILVWRDFGSSDD--------SETCTLLHWHHDEVNSLSFSSDGAYL 266 (792)
T ss_pred ceeEEeccccceEEEeccCC-------------cEEEEeccccccc--------cccceEEEecccccceeEEecCCceE
Confidence 45689999999998876443 7888855442100 11111222333445689999999865
Q ss_pred eEEEEeccCCCcccccccCCeEEEEecCCCCCCCceEEeecccccCCeeeccCCceEEEEEecccCceEEEEEcC
Q 002209 414 LYWAETQDGGDAKVEVTPRDIIYTQQAEPVQGEGPEILHKLDLRYGGISWCDDSLALVYESWYKTRRTRTWVISP 488 (953)
Q Consensus 414 ~~~~~~~~~~~~~~~~~~~~~l~~~d~~~~~g~~~~~l~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~l~~~d~ 488 (953)
+-. +....+.+|.+ ..++.+.|..-...+..+.|||||......-.++ .|..+..
T Consensus 267 lSG-------------G~E~VLv~Wq~---~T~~kqfLPRLgs~I~~i~vS~ds~~~sl~~~DN----qI~li~~ 321 (792)
T KOG1963|consen 267 LSG-------------GREGVLVLWQL---ETGKKQFLPRLGSPILHIVVSPDSDLYSLVLEDN----QIHLIKA 321 (792)
T ss_pred eec-------------ccceEEEEEee---cCCCcccccccCCeeEEEEEcCCCCeEEEEecCc----eEEEEec
Confidence 543 33456677875 4455556666667778899999998755544433 4445544
No 398
>KOG0321 consensus WD40 repeat-containing protein L2DTL [Function unknown]
Probab=96.58 E-value=0.15 Score=57.09 Aligned_cols=60 Identities=15% Similarity=0.193 Sum_probs=41.5
Q ss_pred CcccceEeccCCCeEEEEEeeccccCCCCcceEEEEECCCCceeec--ccCCCccccccccceEEecCCeEEEEE
Q 002209 189 AKLNFVTWSQDGKHLAFSIRIDAEDSSSSKLRVWVADVDTGKARPL--FQSPDIYLNAIFDNFVWVNNSTLLVCT 261 (953)
Q Consensus 189 ~~~~~~~wSPDG~~laf~~~~~~~~~~~~~~~l~~~d~~~g~~~~l--t~~~~~~~~~~~~~~~wspDg~~l~~~ 261 (953)
..+....|-| |+..+.... |+..+..||+++++.+.. .-... ..+.+.+|.|+...+|++
T Consensus 101 nAifDl~wap-ge~~lVsas--------GDsT~r~Wdvk~s~l~G~~~~~GH~----~SvkS~cf~~~n~~vF~t 162 (720)
T KOG0321|consen 101 NAIFDLKWAP-GESLLVSAS--------GDSTIRPWDVKTSRLVGGRLNLGHT----GSVKSECFMPTNPAVFCT 162 (720)
T ss_pred ceeEeeccCC-CceeEEEcc--------CCceeeeeeeccceeecceeecccc----cccchhhhccCCCcceee
Confidence 3788899999 776666442 466777888888776544 22222 226788999999888776
No 399
>KOG1523 consensus Actin-related protein Arp2/3 complex, subunit ARPC1/p41-ARC [Cytoskeleton]
Probab=96.58 E-value=0.042 Score=56.23 Aligned_cols=220 Identities=9% Similarity=0.036 Sum_probs=115.2
Q ss_pred CcccccccCCCCcEEEEEEecCCccccccCCCCCcceEEEeccCce-EEEeccCCCcccCCccccccccCccceeeccCC
Q 002209 332 AVYTSLDPSPDEKYILISSIHRPYSFIVPCGRFPRQVGVWTTDGIF-VRELCDLPLAEDIPIAFNSVRKGMRSINWRSDK 410 (953)
Q Consensus 332 ~~~~~~~~SpDG~~l~~~~~~~~~~~~~~~~~~~~~i~~~d~~g~~-~~~l~~~~~~~~~p~~~~~~~~~~~~~~wspDg 410 (953)
..++..+|++|+..||+..+.. ++.++...+.+ .+......- ....+..+.|+|.+
T Consensus 11 ~pitchAwn~drt~iAv~~~~~-------------evhiy~~~~~~~w~~~htls~----------Hd~~vtgvdWap~s 67 (361)
T KOG1523|consen 11 EPITCHAWNSDRTQIAVSPNNH-------------EVHIYSMLGADLWEPAHTLSE----------HDKIVTGVDWAPKS 67 (361)
T ss_pred CceeeeeecCCCceEEeccCCc-------------eEEEEEecCCCCceeceehhh----------hCcceeEEeecCCC
Confidence 4577889999999999987443 78888887766 333222211 11233458999999
Q ss_pred CCceEEEEeccCCCcccccccCCeEEEEecCCCCCCCc---eEEeecccccCCeeeccCCceEEEEEecccCceEEEEEc
Q 002209 411 PSTLYWAETQDGGDAKVEVTPRDIIYTQQAEPVQGEGP---EILHKLDLRYGGISWCDDSLALVYESWYKTRRTRTWVIS 487 (953)
Q Consensus 411 ~~i~~~~~~~~~~~~~~~~~~~~~l~~~d~~~~~g~~~---~~l~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~l~~~d 487 (953)
.+|+-- +....-|++.. .++++- -.|.........+.|||.+..++..+.... ..++.+.
T Consensus 68 nrIvtc-------------s~drnayVw~~--~~~~~WkptlvLlRiNrAAt~V~WsP~enkFAVgSgar~--isVcy~E 130 (361)
T KOG1523|consen 68 NRIVTC-------------SHDRNAYVWTQ--PSGGTWKPTLVLLRINRAATCVKWSPKENKFAVGSGARL--ISVCYYE 130 (361)
T ss_pred CceeEc-------------cCCCCcccccc--CCCCeeccceeEEEeccceeeEeecCcCceEEeccCccE--EEEEEEe
Confidence 888765 33344566653 234332 124556677788999999888776653221 2344443
Q ss_pred CCCCCCCcEEeecCCC-ccccCCCCCCCeEeccCCCEEEEEeeeccCCCcEEEEecCCCCCCCCCCeEEEEECCCCceEE
Q 002209 488 PGSKDVAPRILFDRSS-EDVYSDPGSPMMRRTSTGTYVIAKIKKENDEGTYILLNGNGATPEGNIPFLDLFDINTGSKER 566 (953)
Q Consensus 488 ~~~~~~~~~~~~~~~~-~~~~~~~~~p~~~~SpDG~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~d~~~~~~~~ 566 (953)
-+..-=-.+.+ ..+. ..+.. +.|.|++-.|+...-+. +.+|+ ..|+-+++++..-.
T Consensus 131 ~ENdWWVsKhi-kkPirStv~s------ldWhpnnVLlaaGs~D~---k~rVf-------------SayIK~Vdekpap~ 187 (361)
T KOG1523|consen 131 QENDWWVSKHI-KKPIRSTVTS------LDWHPNNVLLAAGSTDG---KCRVF-------------SAYIKGVDEKPAPT 187 (361)
T ss_pred cccceehhhhh-CCccccceee------eeccCCcceecccccCc---ceeEE-------------EEeeeccccCCCCC
Confidence 22210000000 0000 00111 56777776665554221 11111 13344444443322
Q ss_pred EeccCcccceeeeEeec----cCCccccccccCCEEEEEEecCCCCceEEEEECCCCC
Q 002209 567 IWESDKEKYYETTVALM----SDQTEGDLYLNQLKILTSKESKTENTQYYIQSWPDKK 620 (953)
Q Consensus 567 l~~~~~~~~~~~~~~~~----~~~~~~~~s~dg~~l~~~~~~~~~p~~l~~~~~~~g~ 620 (953)
-|... ..|..+..-. .......|||+|.++.++.... .+++.|..+..
T Consensus 188 pWgsk--~PFG~lm~E~~~~ggwvh~v~fs~sG~~lawv~Hds----~v~~~da~~p~ 239 (361)
T KOG1523|consen 188 PWGSK--MPFGQLMSEASSSGGWVHGVLFSPSGNRLAWVGHDS----TVSFVDAAGPS 239 (361)
T ss_pred CCccC--CcHHHHHHhhccCCCceeeeEeCCCCCEeeEecCCC----ceEEeecCCCc
Confidence 23322 1222211111 1223467999999999876643 47777765554
No 400
>PRK02888 nitrous-oxide reductase; Validated
Probab=96.52 E-value=0.15 Score=58.59 Aligned_cols=111 Identities=14% Similarity=-0.043 Sum_probs=59.7
Q ss_pred CCCCceecCCCCEEEEEecC--CCCCccccccccceeceEEecCCC------CCCcceeeeeceEEEEccCCCCCCceee
Q 002209 110 PLPALSFSPQRDKILFLKRR--ALPPLEELARPEEKLAGLRIDGKC------NTRSRMSFYTGIGIHQLFPDGKLGQEIE 181 (953)
Q Consensus 110 ~~~~~~~SPDG~~la~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~i~i~~~~~~g~~~~~~~ 181 (953)
+....++||||+++.+++.. .+..+..+...+.. ..+.+++.. ++.......+.+.++|.......+ ...
T Consensus 236 npd~v~~spdGk~afvTsyNsE~G~tl~em~a~e~d-~~vvfni~~iea~vkdGK~~~V~gn~V~VID~~t~~~~~-~~v 313 (635)
T PRK02888 236 NLDNVDTDYDGKYAFSTCYNSEEGVTLAEMMAAERD-WVVVFNIARIEEAVKAGKFKTIGGSKVPVVDGRKAANAG-SAL 313 (635)
T ss_pred CcccceECCCCCEEEEeccCcccCcceeeeccccCc-eEEEEchHHHHHhhhCCCEEEECCCEEEEEECCccccCC-cce
Confidence 45678999999999888643 22333333332222 333333321 111111111347777763210001 112
Q ss_pred eecCCCCCcccceEeccCCCeEEEEEeeccccCCCCcceEEEEECCCCc
Q 002209 182 IQGFPDGAKLNFVTWSQDGKHLAFSIRIDAEDSSSSKLRVWVADVDTGK 230 (953)
Q Consensus 182 l~~~~~~~~~~~~~wSPDG~~laf~~~~~~~~~~~~~~~l~~~d~~~g~ 230 (953)
+..++.+........||||++|+.+.. -...+-++|++..+
T Consensus 314 ~~yIPVGKsPHGV~vSPDGkylyVank--------lS~tVSVIDv~k~k 354 (635)
T PRK02888 314 TRYVPVPKNPHGVNTSPDGKYFIANGK--------LSPTVTVIDVRKLD 354 (635)
T ss_pred EEEEECCCCccceEECCCCCEEEEeCC--------CCCcEEEEEChhhh
Confidence 222445567788899999999887542 35677788877643
No 401
>KOG0285 consensus Pleiotropic regulator 1 [RNA processing and modification]
Probab=96.43 E-value=0.67 Score=48.40 Aligned_cols=234 Identities=15% Similarity=0.089 Sum_probs=127.4
Q ss_pred CCCCceecCCCCEEEEEecCCCCCccccccccceeceEEecCCCCCCcceeeeeceEEEEccCCCCCCce-eeeecCCCC
Q 002209 110 PLPALSFSPQRDKILFLKRRALPPLEELARPEEKLAGLRIDGKCNTRSRMSFYTGIGIHQLFPDGKLGQE-IEIQGFPDG 188 (953)
Q Consensus 110 ~~~~~~~SPDG~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~i~~~~~~g~~~~~-~~l~~~~~~ 188 (953)
++..+++-|-.+|++..+.+ ..|.|||+.+ ++. -.|+++-
T Consensus 153 WVr~vavdP~n~wf~tgs~D---------------------------------rtikIwDlat----g~LkltltGhi-- 193 (460)
T KOG0285|consen 153 WVRSVAVDPGNEWFATGSAD---------------------------------RTIKIWDLAT----GQLKLTLTGHI-- 193 (460)
T ss_pred eEEEEeeCCCceeEEecCCC---------------------------------ceeEEEEccc----CeEEEeecchh--
Confidence 45566777777777666654 4678999954 332 2233222
Q ss_pred CcccceEeccCCCeEEEEEeeccccCCCCcceEEEEECCCCceeecccCCCccccccccceEEecCCeEEEEEecCCCCC
Q 002209 189 AKLNFVTWSQDGKHLAFSIRIDAEDSSSSKLRVWVADVDTGKARPLFQSPDIYLNAIFDNFVWVNNSTLLVCTIPLLRGD 268 (953)
Q Consensus 189 ~~~~~~~wSPDG~~laf~~~~~~~~~~~~~~~l~~~d~~~g~~~~lt~~~~~~~~~~~~~~~wspDg~~l~~~~~~~~~~ 268 (953)
..+..+++|+---+| |... +...+-.||++..+..+-..+.-.. +..+...|--..|+..
T Consensus 194 ~~vr~vavS~rHpYl-Fs~g--------edk~VKCwDLe~nkvIR~YhGHlS~----V~~L~lhPTldvl~t~------- 253 (460)
T KOG0285|consen 194 ETVRGVAVSKRHPYL-FSAG--------EDKQVKCWDLEYNKVIRHYHGHLSG----VYCLDLHPTLDVLVTG------- 253 (460)
T ss_pred heeeeeeecccCceE-EEec--------CCCeeEEEechhhhhHHHhccccce----eEEEeccccceeEEec-------
Confidence 368889999755544 5432 3678889999887765543332211 4455555666666644
Q ss_pred CCCCCCCCCCCceeecCCCccccchhhhhhcCCcchhhhhhhhccceEEEEEc-CC-ceeEeCCC-CcccccccCCCCcE
Q 002209 269 PPKKPLVPLGPKMQSNEKRDIIQVRTFQDLLKDEYDEDLFDYYATTQLVLVSL-DG-TVKEIGPP-AVYTSLDPSPDEKY 345 (953)
Q Consensus 269 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~l~~~~~-~g-~~~~l~~~-~~~~~~~~SpDG~~ 345 (953)
.+| +.+.++|+ +. .+..+... ..+.++.+-|-.-.
T Consensus 254 ---------------------------------grD---------st~RvWDiRtr~~V~~l~GH~~~V~~V~~~~~dpq 291 (460)
T KOG0285|consen 254 ---------------------------------GRD---------STIRVWDIRTRASVHVLSGHTNPVASVMCQPTDPQ 291 (460)
T ss_pred ---------------------------------CCc---------ceEEEeeecccceEEEecCCCCcceeEEeecCCCc
Confidence 111 33444555 44 34444433 55666666663334
Q ss_pred EEEEEecCCccccccCCCCCcceEEEecc-CceEEEeccCCCcccCCccccccccCccceeeccCCCCceEEEEeccCCC
Q 002209 346 ILISSIHRPYSFIVPCGRFPRQVGVWTTD-GIFVRELCDLPLAEDIPIAFNSVRKGMRSINWRSDKPSTLYWAETQDGGD 424 (953)
Q Consensus 346 l~~~~~~~~~~~~~~~~~~~~~i~~~d~~-g~~~~~l~~~~~~~~~p~~~~~~~~~~~~~~wspDg~~i~~~~~~~~~~~ 424 (953)
|+..+.+ ..|.+||+. |+....++.+.. .++.+...|+-..++-
T Consensus 292 vit~S~D-------------~tvrlWDl~agkt~~tlt~hkk-------------svral~lhP~e~~fAS--------- 336 (460)
T KOG0285|consen 292 VITGSHD-------------STVRLWDLRAGKTMITLTHHKK-------------SVRALCLHPKENLFAS--------- 336 (460)
T ss_pred eEEecCC-------------ceEEEeeeccCceeEeeecccc-------------eeeEEecCCchhhhhc---------
Confidence 5555533 389999997 556666776542 2355666665432221
Q ss_pred cccccccCCeEEEEecCCCCCCCceEEeecccccCCeeeccCCceEEEEEecccCceEEEEEcCCCC
Q 002209 425 AKVEVTPRDIIYTQQAEPVQGEGPEILHKLDLRYGGISWCDDSLALVYESWYKTRRTRTWVISPGSK 491 (953)
Q Consensus 425 ~~~~~~~~~~l~~~d~~~~~g~~~~~l~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~l~~~d~~~~ 491 (953)
...+.+-.+++ ..|.-...+..+...+..++-..||- +++..++ ..++..|..++
T Consensus 337 -----as~dnik~w~~--p~g~f~~nlsgh~~iintl~~nsD~v--~~~G~dn---g~~~fwdwksg 391 (460)
T KOG0285|consen 337 -----ASPDNIKQWKL--PEGEFLQNLSGHNAIINTLSVNSDGV--LVSGGDN---GSIMFWDWKSG 391 (460)
T ss_pred -----cCCccceeccC--CccchhhccccccceeeeeeeccCce--EEEcCCc---eEEEEEecCcC
Confidence 12334555554 23332333444444555555555653 2222222 25777777664
No 402
>KOG0308 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=96.42 E-value=0.088 Score=58.89 Aligned_cols=159 Identities=11% Similarity=0.140 Sum_probs=96.7
Q ss_pred CCCCceecCCCCEEEEEecCCCCCccccccccceeceEEecCCCCCCcceeeeeceEEEEccCCCCCCceeeeecCCCCC
Q 002209 110 PLPALSFSPQRDKILFLKRRALPPLEELARPEEKLAGLRIDGKCNTRSRMSFYTGIGIHQLFPDGKLGQEIEIQGFPDGA 189 (953)
Q Consensus 110 ~~~~~~~SPDG~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~i~~~~~~g~~~~~~~l~~~~~~~ 189 (953)
++..+.+--+|+.++..+.+ +.+.+|+...++. .-...|.. +..
T Consensus 75 WVNDiiL~~~~~tlIS~SsD---------------------------------tTVK~W~~~~~~~-~c~stir~--H~D 118 (735)
T KOG0308|consen 75 WVNDIILCGNGKTLISASSD---------------------------------TTVKVWNAHKDNT-FCMSTIRT--HKD 118 (735)
T ss_pred HHhhHHhhcCCCceEEecCC---------------------------------ceEEEeecccCcc-hhHhhhhc--ccc
Confidence 57788889999988888876 3678998855431 11122222 223
Q ss_pred cccceEe-ccCCCeEEEEEeeccccCCCCcceEEEEECCCCceeecccCCCccc-------cccccceEEecCCeEEEEE
Q 002209 190 KLNFVTW-SQDGKHLAFSIRIDAEDSSSSKLRVWVADVDTGKARPLFQSPDIYL-------NAIFDNFVWVNNSTLLVCT 261 (953)
Q Consensus 190 ~~~~~~w-SPDG~~laf~~~~~~~~~~~~~~~l~~~d~~~g~~~~lt~~~~~~~-------~~~~~~~~wspDg~~l~~~ 261 (953)
++...+. .++...+|. ++=...|++||+++|.++.+........ ...+.+++-.+.|..|+..
T Consensus 119 YVkcla~~ak~~~lvaS---------gGLD~~IflWDin~~~~~l~~s~n~~t~~sl~sG~k~siYSLA~N~t~t~ivsG 189 (735)
T KOG0308|consen 119 YVKCLAYIAKNNELVAS---------GGLDRKIFLWDINTGTATLVASFNNVTVNSLGSGPKDSIYSLAMNQTGTIIVSG 189 (735)
T ss_pred hheeeeecccCceeEEe---------cCCCccEEEEEccCcchhhhhhccccccccCCCCCccceeeeecCCcceEEEec
Confidence 6777776 556555444 2236789999999886633322222110 1112233333445344322
Q ss_pred ecCCCCCCCCCCCCCCCCceeecCCCccccchhhhhhcCCcchhhhhhhhccceEEEEEc-CC-ceeEeCCC-Ccccccc
Q 002209 262 IPLLRGDPPKKPLVPLGPKMQSNEKRDIIQVRTFQDLLKDEYDEDLFDYYATTQLVLVSL-DG-TVKEIGPP-AVYTSLD 338 (953)
Q Consensus 262 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~l~~~~~-~g-~~~~l~~~-~~~~~~~ 338 (953)
. ....|.++|. ++ +...|... .++..+.
T Consensus 190 --------------------------------------g-----------tek~lr~wDprt~~kimkLrGHTdNVr~ll 220 (735)
T KOG0308|consen 190 --------------------------------------G-----------TEKDLRLWDPRTCKKIMKLRGHTDNVRVLL 220 (735)
T ss_pred --------------------------------------C-----------cccceEEeccccccceeeeeccccceEEEE
Confidence 0 1234666776 55 45555555 8889999
Q ss_pred cCCCCcEEEEEEecCCccccccCCCCCcceEEEeccC
Q 002209 339 PSPDEKYILISSIHRPYSFIVPCGRFPRQVGVWTTDG 375 (953)
Q Consensus 339 ~SpDG~~l~~~~~~~~~~~~~~~~~~~~~i~~~d~~g 375 (953)
.++||.+++.++.+. .|.+||+.-
T Consensus 221 ~~dDGt~~ls~sSDg-------------tIrlWdLgq 244 (735)
T KOG0308|consen 221 VNDDGTRLLSASSDG-------------TIRLWDLGQ 244 (735)
T ss_pred EcCCCCeEeecCCCc-------------eEEeeeccc
Confidence 999999999888665 899999973
No 403
>PF00151 Lipase: Lipase; InterPro: IPR013818 Triglyceride lipases (3.1.1.3 from EC) are lipolytic enzymes that hydrolyse ester linkages of triglycerides []. Lipases are widely distributed in animals, plants and prokaryotes. At least three tissue-specific isozymes exist in higher vertebrates, pancreatic, hepatic and gastric/lingual. These lipases are closely related to each other and to lipoprotein lipase (3.1.1.34 from EC), which hydrolyses triglycerides of chylomicrons and very low density lipoproteins (VLDL) []. The most conserved region in all these proteins is centred around a serine residue which has been shown [] to participate, with an histidine and an aspartic acid residue, in a charge relay system. Such a region is also present in lipases of prokaryotic origin and in lecithin-cholesterol acyltransferase (2.3.1.43 from EC) (LCAT) [], which catalyzes fatty acid transfer between phosphatidylcholine and cholesterol.; PDB: 1LPB_B 1LPA_B 1N8S_A 1GPL_A 1W52_X 2PVS_B 2OXE_B 1BU8_A 2PPL_A 1ETH_A ....
Probab=96.41 E-value=0.0095 Score=64.46 Aligned_cols=112 Identities=9% Similarity=-0.099 Sum_probs=57.4
Q ss_pred CccEEEEeCCCCCcCcCCCCcccCCCCCCCCccchHHHHHHH---cCcEEEEcCCCCCCCCCChhhhhhhHHHHHHHHHH
Q 002209 669 PLPCLFWSYPGEFKSKDAAGQVRGSPNEFPRIGSTSVLLWLA---RGFAILGGPTTPIIGEGDEEANDRFVEQLVACAEA 745 (953)
Q Consensus 669 ~~P~vv~~hGg~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~---~G~~V~~~~~~~~~G~G~~~~~~~~~~~~~~D~~~ 745 (953)
..|++|++||..... ....+.......+.. ..+.|+.+|...... .............-..+..
T Consensus 70 ~~pt~iiiHGw~~~~------------~~~~~~~~~~~all~~~~~d~NVI~VDWs~~a~-~~Y~~a~~n~~~vg~~la~ 136 (331)
T PF00151_consen 70 SKPTVIIIHGWTGSG------------SSESWIQDMIKALLQKDTGDYNVIVVDWSRGAS-NNYPQAVANTRLVGRQLAK 136 (331)
T ss_dssp TSEEEEEE--TT-TT-------------TTTHHHHHHHHHHCC--S-EEEEEEE-HHHHS-S-HHHHHHHHHHHHHHHHH
T ss_pred CCCeEEEEcCcCCcc------------cchhHHHHHHHHHHhhccCCceEEEEcchhhcc-ccccchhhhHHHHHHHHHH
Confidence 379999999953111 011111222233333 478998855511000 0000000111223344445
Q ss_pred HHHHHHHcCCCCCCcEEEEEeChHHHHHHHHHHhCCC--cccEEEEcccC
Q 002209 746 AVEEVVRRGVAHPSKIAVGGHSYGAFMTANLLAHAPH--LFCCGIARSGA 793 (953)
Q Consensus 746 ~~~~l~~~~~~d~~~i~l~G~S~GG~~a~~~a~~~p~--~~~a~v~~~~~ 793 (953)
.+..|.+...++.++|.|+|||+||.+|..++..... ++..+....|+
T Consensus 137 ~l~~L~~~~g~~~~~ihlIGhSLGAHvaG~aG~~~~~~~ki~rItgLDPA 186 (331)
T PF00151_consen 137 FLSFLINNFGVPPENIHLIGHSLGAHVAGFAGKYLKGGGKIGRITGLDPA 186 (331)
T ss_dssp HHHHHHHHH---GGGEEEEEETCHHHHHHHHHHHTTT---SSEEEEES-B
T ss_pred HHHHHHhhcCCChhHEEEEeeccchhhhhhhhhhccCcceeeEEEecCcc
Confidence 5666765545788999999999999999999987755 67777776664
No 404
>KOG0299 consensus U3 snoRNP-associated protein (contains WD40 repeats) [RNA processing and modification]
Probab=96.38 E-value=0.17 Score=54.32 Aligned_cols=22 Identities=5% Similarity=-0.111 Sum_probs=17.4
Q ss_pred ccccCCeeeccCCceEEEEEec
Q 002209 455 DLRYGGISWCDDSLALVYESWY 476 (953)
Q Consensus 455 ~~~~~~~~~SpDg~~l~~~~~~ 476 (953)
.+-++++.|+++|++|+.+...
T Consensus 425 ~GfVNsl~f~~sgk~ivagiGk 446 (479)
T KOG0299|consen 425 VGFVNSLAFSNSGKRIVAGIGK 446 (479)
T ss_pred ccEEEEEEEccCCCEEEEeccc
Confidence 4567889999999998877543
No 405
>PF01674 Lipase_2: Lipase (class 2); InterPro: IPR002918 Lipases or triacylglycerol acylhydrolases hydrolyse ester bonds in triacylglycerol giving diacylglycerol, monoacylglycerol, glycerol and free fatty acids []. This group of lipases has been called class 2 as they are not clearly related to other lipase families, and includes LipA and LipB from Bacillus subtilis [] and uncharacterised proteins from Caenorhabditis.; PDB: 2VTV_B 2X76_A 2X5X_A 2QXU_A 3QMM_A 1I6W_A 3D2C_J 2QXT_B 1R50_A 1T2N_A ....
Probab=96.36 E-value=0.016 Score=58.34 Aligned_cols=70 Identities=17% Similarity=0.252 Sum_probs=39.3
Q ss_pred hHHHHHHHcCcE---EEEcCCCCCCCCCChhhh---hhhHHHHHHHHHHHHHHHHHcCCCCCCcEEEEEeChHHHHHHHH
Q 002209 703 TSVLLWLARGFA---ILGGPTTPIIGEGDEEAN---DRFVEQLVACAEAAVEEVVRRGVAHPSKIAVGGHSYGAFMTANL 776 (953)
Q Consensus 703 ~~~~~la~~G~~---V~~~~~~~~~G~G~~~~~---~~~~~~~~~D~~~~~~~l~~~~~~d~~~i~l~G~S~GG~~a~~~ 776 (953)
....+|+++||. |+...+ |.+..... ....-.....+.++++.+.+. ... +|-|+||||||.++-++
T Consensus 20 ~~~~~l~~~GY~~~~vya~ty----g~~~~~~~~~~~~~~~~~~~~l~~fI~~Vl~~--TGa-kVDIVgHS~G~~iaR~y 92 (219)
T PF01674_consen 20 TLAPYLKAAGYCDSEVYALTY----GSGNGSPSVQNAHMSCESAKQLRAFIDAVLAY--TGA-KVDIVGHSMGGTIARYY 92 (219)
T ss_dssp HHHHHHHHTT--CCCEEEE------S-CCHHTHHHHHHB-HHHHHHHHHHHHHHHHH--HT---EEEEEETCHHHHHHHH
T ss_pred HHHHHHHHcCCCcceeEeccC----CCCCCCCcccccccchhhHHHHHHHHHHHHHh--hCC-EEEEEEcCCcCHHHHHH
Confidence 346689999999 677555 22222111 110122345666666666553 335 89999999999999888
Q ss_pred HHh
Q 002209 777 LAH 779 (953)
Q Consensus 777 a~~ 779 (953)
+..
T Consensus 93 i~~ 95 (219)
T PF01674_consen 93 IKG 95 (219)
T ss_dssp HHH
T ss_pred HHH
Confidence 764
No 406
>KOG0646 consensus WD40 repeat protein [General function prediction only]
Probab=96.35 E-value=0.12 Score=55.51 Aligned_cols=142 Identities=12% Similarity=0.019 Sum_probs=77.0
Q ss_pred ceEEEEEc-CCceeEeCCC--CcccccccCCCCcEEEEEEecCCccccccCCCCCcceEEEeccCceEEEeccCCCcccC
Q 002209 314 TQLVLVSL-DGTVKEIGPP--AVYTSLDPSPDEKYILISSIHRPYSFIVPCGRFPRQVGVWTTDGIFVRELCDLPLAEDI 390 (953)
Q Consensus 314 ~~l~~~~~-~g~~~~l~~~--~~~~~~~~SpDG~~l~~~~~~~~~~~~~~~~~~~~~i~~~d~~g~~~~~l~~~~~~~~~ 390 (953)
++||++.+ +|+.-.+-.. ..++-+.||-||++|+..+.+. .|.+|.+..- +...+.....
T Consensus 103 g~lYlWelssG~LL~v~~aHYQ~ITcL~fs~dgs~iiTgskDg-------------~V~vW~l~~l----v~a~~~~~~~ 165 (476)
T KOG0646|consen 103 GNLYLWELSSGILLNVLSAHYQSITCLKFSDDGSHIITGSKDG-------------AVLVWLLTDL----VSADNDHSVK 165 (476)
T ss_pred CcEEEEEeccccHHHHHHhhccceeEEEEeCCCcEEEecCCCc-------------cEEEEEEEee----cccccCCCcc
Confidence 57888888 8875444332 6678889999999998777554 7888876410 0000000001
Q ss_pred Cc-cccccccCccceeeccCCCCceEEEEeccCCCcccccccCCeEEEEecCCCCCCCceEEeecccccCCeeeccCCce
Q 002209 391 PI-AFNSVRKGMRSINWRSDKPSTLYWAETQDGGDAKVEVTPRDIIYTQQAEPVQGEGPEILHKLDLRYGGISWCDDSLA 469 (953)
Q Consensus 391 p~-~~~~~~~~~~~~~wspDg~~i~~~~~~~~~~~~~~~~~~~~~l~~~d~~~~~g~~~~~l~~~~~~~~~~~~SpDg~~ 469 (953)
|. .|+.+--.+.++.-.+-|.. .+. +.++.+..+.+||+ ..+..-.-...+.....++.+|-++.
T Consensus 166 p~~~f~~HtlsITDl~ig~Gg~~-~rl----------~TaS~D~t~k~wdl---S~g~LLlti~fp~si~av~lDpae~~ 231 (476)
T KOG0646|consen 166 PLHIFSDHTLSITDLQIGSGGTN-ARL----------YTASEDRTIKLWDL---SLGVLLLTITFPSSIKAVALDPAERV 231 (476)
T ss_pred ceeeeccCcceeEEEEecCCCcc-ceE----------EEecCCceEEEEEe---ccceeeEEEecCCcceeEEEcccccE
Confidence 11 11111112233333332211 111 12255667788886 44432111234556678899999988
Q ss_pred EEEEEecccCceEEEEEcCCC
Q 002209 470 LVYESWYKTRRTRTWVISPGS 490 (953)
Q Consensus 470 l~~~~~~~~~~~~l~~~d~~~ 490 (953)
++.....+ .+|+.+..+
T Consensus 232 ~yiGt~~G----~I~~~~~~~ 248 (476)
T KOG0646|consen 232 VYIGTEEG----KIFQNLLFK 248 (476)
T ss_pred EEecCCcc----eEEeeehhc
Confidence 77765433 566666544
No 407
>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]
Probab=96.34 E-value=0.98 Score=54.87 Aligned_cols=166 Identities=14% Similarity=0.158 Sum_probs=91.5
Q ss_pred CcccccccCCCCcEEEEEEecCCccccccCCCCCcceEEEeccCceEEEeccCCCcccCCccccccccCccceeeccCCC
Q 002209 332 AVYTSLDPSPDEKYILISSIHRPYSFIVPCGRFPRQVGVWTTDGIFVRELCDLPLAEDIPIAFNSVRKGMRSINWRSDKP 411 (953)
Q Consensus 332 ~~~~~~~~SpDG~~l~~~~~~~~~~~~~~~~~~~~~i~~~d~~g~~~~~l~~~~~~~~~p~~~~~~~~~~~~~~wspDg~ 411 (953)
+.+.++.|--|+..|.+....+ +|.++|........+... ..|+...+||||++
T Consensus 69 ~~i~s~~fl~d~~~i~v~~~~G-------------~iilvd~et~~~eivg~v-------------d~GI~aaswS~Dee 122 (1265)
T KOG1920|consen 69 DEIVSVQFLADTNSICVITALG-------------DIILVDPETLELEIVGNV-------------DNGISAASWSPDEE 122 (1265)
T ss_pred cceEEEEEecccceEEEEecCC-------------cEEEEcccccceeeeeec-------------cCceEEEeecCCCc
Confidence 3566777888888888887443 777777765554443332 25777899999999
Q ss_pred CceEEEEeccCCCcccccccCCeEEEEec--C-----CC--------------CCCCceEEee-----------------
Q 002209 412 STLYWAETQDGGDAKVEVTPRDIIYTQQA--E-----PV--------------QGEGPEILHK----------------- 453 (953)
Q Consensus 412 ~i~~~~~~~~~~~~~~~~~~~~~l~~~d~--~-----~~--------------~g~~~~~l~~----------------- 453 (953)
.+++.+. ...+++..- + +. -|.+.+++..
T Consensus 123 ~l~liT~-------------~~tll~mT~~f~~i~E~~L~~d~~~~sk~v~VGwGrkeTqfrgs~gr~~~~~~~~~ek~~ 189 (1265)
T KOG1920|consen 123 LLALITG-------------RQTLLFMTKDFEPIAEKPLDADDERKSKFVNVGWGRKETQFRGSEGRQAARQKIEKEKAL 189 (1265)
T ss_pred EEEEEeC-------------CcEEEEEeccccchhccccccccccccccceecccccceeeecchhhhcccccccccccc
Confidence 8887732 111111110 0 00 0111112210
Q ss_pred ----cccccCCeeeccCCceEEEEEeccc-CceEEEEEcCCCCCCCcEEeecCCCccccCCCCCCCeEeccCCCEEEEEe
Q 002209 454 ----LDLRYGGISWCDDSLALVYESWYKT-RRTRTWVISPGSKDVAPRILFDRSSEDVYSDPGSPMMRRTSTGTYVIAKI 528 (953)
Q Consensus 454 ----~~~~~~~~~~SpDg~~l~~~~~~~~-~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~SpDG~~l~~~~ 528 (953)
.+..-.++.|--||++++.+.-... +...+.++|.++. ...+..+... ..+.++|-|.|.+++..-
T Consensus 190 ~~~~~~~~~~~IsWRgDg~~fAVs~~~~~~~~RkirV~drEg~----Lns~se~~~~-----l~~~LsWkPsgs~iA~iq 260 (1265)
T KOG1920|consen 190 EQIEQDDHKTSISWRGDGEYFAVSFVESETGTRKIRVYDREGA----LNSTSEPVEG-----LQHSLSWKPSGSLIAAIQ 260 (1265)
T ss_pred cchhhccCCceEEEccCCcEEEEEEEeccCCceeEEEecccch----hhcccCcccc-----cccceeecCCCCeEeeee
Confidence 1111234899999999887553222 2235666665531 1111112111 123388999999988776
Q ss_pred eeccCCCcEEEEecCCCC
Q 002209 529 KKENDEGTYILLNGNGAT 546 (953)
Q Consensus 529 ~~~~~~~~~~~~~~~~~~ 546 (953)
...+++ ..+++..+|-+
T Consensus 261 ~~~sd~-~IvffErNGL~ 277 (1265)
T KOG1920|consen 261 CKTSDS-DIVFFERNGLR 277 (1265)
T ss_pred ecCCCC-cEEEEecCCcc
Confidence 544333 56667777654
No 408
>KOG0303 consensus Actin-binding protein Coronin, contains WD40 repeats [Cytoskeleton]
Probab=96.34 E-value=0.31 Score=51.45 Aligned_cols=116 Identities=9% Similarity=0.053 Sum_probs=67.7
Q ss_pred CcccccccCCCCcEEEEEEecCCccccccCCCCCcceEEEeccCceE-EEeccCCCcccCCccccccccCccceeeccCC
Q 002209 332 AVYTSLDPSPDEKYILISSIHRPYSFIVPCGRFPRQVGVWTTDGIFV-RELCDLPLAEDIPIAFNSVRKGMRSINWRSDK 410 (953)
Q Consensus 332 ~~~~~~~~SpDG~~l~~~~~~~~~~~~~~~~~~~~~i~~~d~~g~~~-~~l~~~~~~~~~p~~~~~~~~~~~~~~wspDg 410 (953)
..+..+.|.|--.-+++++.. ...|.+|++.+++. -.|. ++ .-+.++.|+-||
T Consensus 132 rrVg~V~wHPtA~NVLlsag~------------Dn~v~iWnv~tgeali~l~-hp-------------d~i~S~sfn~dG 185 (472)
T KOG0303|consen 132 RRVGLVQWHPTAPNVLLSAGS------------DNTVSIWNVGTGEALITLD-HP-------------DMVYSMSFNRDG 185 (472)
T ss_pred eeEEEEeecccchhhHhhccC------------CceEEEEeccCCceeeecC-CC-------------CeEEEEEeccCC
Confidence 455678899987777776522 34899999996653 3343 33 234689999999
Q ss_pred CCceEEEEeccCCCcccccccCCeEEEEecCCCCCCCceEE-eeccc-ccCCeeeccCCceEEEEEecccCceEEEEEcC
Q 002209 411 PSTLYWAETQDGGDAKVEVTPRDIIYTQQAEPVQGEGPEIL-HKLDL-RYGGISWCDDSLALVYESWYKTRRTRTWVISP 488 (953)
Q Consensus 411 ~~i~~~~~~~~~~~~~~~~~~~~~l~~~d~~~~~g~~~~~l-~~~~~-~~~~~~~SpDg~~l~~~~~~~~~~~~l~~~d~ 488 (953)
..++-. .....|.++|. -.+ +...- ..+.+ ....+.|-.+|+ |+.+....-....+-+.|.
T Consensus 186 s~l~Tt-------------ckDKkvRv~dp--r~~-~~v~e~~~heG~k~~Raifl~~g~-i~tTGfsr~seRq~aLwdp 248 (472)
T KOG0303|consen 186 SLLCTT-------------CKDKKVRVIDP--RRG-TVVSEGVAHEGAKPARAIFLASGK-IFTTGFSRMSERQIALWDP 248 (472)
T ss_pred ceeeee-------------cccceeEEEcC--CCC-cEeeecccccCCCcceeEEeccCc-eeeeccccccccceeccCc
Confidence 977665 34557888883 332 22111 12222 234578889998 5544432222223444444
Q ss_pred CC
Q 002209 489 GS 490 (953)
Q Consensus 489 ~~ 490 (953)
+.
T Consensus 249 ~n 250 (472)
T KOG0303|consen 249 NN 250 (472)
T ss_pred cc
Confidence 43
No 409
>PF07676 PD40: WD40-like Beta Propeller Repeat; InterPro: IPR011659 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide. WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events. This region appears to be related to the IPR001680 from INTERPRO repeat. This model is likely to miss copies within a sequence.; PDB: 2HQS_D 1C5K_A 2IVZ_A 2W8B_D 3IAX_A 1CRZ_A 1N6F_D 1N6D_C 1N6E_C 1K32_A ....
Probab=96.33 E-value=0.0067 Score=42.43 Aligned_cols=37 Identities=16% Similarity=0.188 Sum_probs=26.1
Q ss_pred eEEeecccccCCeeeccCCceEEEEEecc-cCceEEEE
Q 002209 449 EILHKLDLRYGGISWCDDSLALVYESWYK-TRRTRTWV 485 (953)
Q Consensus 449 ~~l~~~~~~~~~~~~SpDg~~l~~~~~~~-~~~~~l~~ 485 (953)
++++........+.|||||++|+|.+.+. .+..+||+
T Consensus 2 ~~~t~~~~~~~~p~~SpDGk~i~f~s~~~~~g~~diy~ 39 (39)
T PF07676_consen 2 KQLTNSPGDDGSPAWSPDGKYIYFTSNRNDRGSFDIYV 39 (39)
T ss_dssp EEES-SSSSEEEEEE-TTSSEEEEEEECT--SSEEEEE
T ss_pred cCcccCCccccCEEEecCCCEEEEEecCCCCCCcCEEC
Confidence 45666666777899999999999998876 23356774
No 410
>PF15492 Nbas_N: Neuroblastoma-amplified sequence, N terminal
Probab=96.30 E-value=0.84 Score=46.62 Aligned_cols=39 Identities=15% Similarity=0.118 Sum_probs=31.1
Q ss_pred CcccccccCCCCcEEEEEEecCCccccccCCCCCcceEEEeccCceEEEecc
Q 002209 332 AVYTSLDPSPDEKYILISSIHRPYSFIVPCGRFPRQVGVWTTDGIFVRELCD 383 (953)
Q Consensus 332 ~~~~~~~~SpDG~~l~~~~~~~~~~~~~~~~~~~~~i~~~d~~g~~~~~l~~ 383 (953)
...+.++||||+..||++... +.|.++|+.|.+...+..
T Consensus 44 PQWRkl~WSpD~tlLa~a~S~-------------G~i~vfdl~g~~lf~I~p 82 (282)
T PF15492_consen 44 PQWRKLAWSPDCTLLAYAEST-------------GTIRVFDLMGSELFVIPP 82 (282)
T ss_pred chheEEEECCCCcEEEEEcCC-------------CeEEEEecccceeEEcCc
Confidence 455678999999999999744 389999999887766544
No 411
>KOG0302 consensus Ribosome Assembly protein [General function prediction only]
Probab=96.27 E-value=0.17 Score=53.12 Aligned_cols=122 Identities=12% Similarity=0.173 Sum_probs=77.6
Q ss_pred CcccccccCCCCcEEEEEEecCCccccccCCCCCcceEEEeccCceEE-EeccCCCcccCCccccccccCccceeeccCC
Q 002209 332 AVYTSLDPSPDEKYILISSIHRPYSFIVPCGRFPRQVGVWTTDGIFVR-ELCDLPLAEDIPIAFNSVRKGMRSINWRSDK 410 (953)
Q Consensus 332 ~~~~~~~~SpDG~~l~~~~~~~~~~~~~~~~~~~~~i~~~d~~g~~~~-~l~~~~~~~~~p~~~~~~~~~~~~~~wspDg 410 (953)
..+..++|||.-+.++++..- .+.|.+||+..+..+ .+... ....-+.-+.|+-+-
T Consensus 258 ~SVEDLqWSptE~~vfaScS~------------DgsIrIWDiRs~~~~~~~~~k-----------Ah~sDVNVISWnr~~ 314 (440)
T KOG0302|consen 258 KSVEDLQWSPTEDGVFASCSC------------DGSIRIWDIRSGPKKAAVSTK-----------AHNSDVNVISWNRRE 314 (440)
T ss_pred cchhhhccCCccCceEEeeec------------CceEEEEEecCCCccceeEee-----------ccCCceeeEEccCCc
Confidence 678899999998888877643 348999999854222 22221 111233458898776
Q ss_pred CCceEEEEeccCCCcccccccCCeEEEEecCCCCCCCceE-EeecccccCCeeeccCCceEEEEEecccCceEEEEEcCC
Q 002209 411 PSTLYWAETQDGGDAKVEVTPRDIIYTQQAEPVQGEGPEI-LHKLDLRYGGISWCDDSLALVYESWYKTRRTRTWVISPG 489 (953)
Q Consensus 411 ~~i~~~~~~~~~~~~~~~~~~~~~l~~~d~~~~~g~~~~~-l~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~l~~~d~~ 489 (953)
..|++. +..+.+-+||+.....+++.. +.-+...+.++.|+|....++.++..+. +..||-+.++
T Consensus 315 ~lLasG-------------~DdGt~~iwDLR~~~~~~pVA~fk~Hk~pItsieW~p~e~s~iaasg~D~-QitiWDlsvE 380 (440)
T KOG0302|consen 315 PLLASG-------------GDDGTLSIWDLRQFKSGQPVATFKYHKAPITSIEWHPHEDSVIAASGEDN-QITIWDLSVE 380 (440)
T ss_pred ceeeec-------------CCCceEEEEEhhhccCCCcceeEEeccCCeeEEEeccccCceEEeccCCC-cEEEEEeecc
Confidence 644443 345577888875556665544 4566778899999997666554443332 2467777665
Q ss_pred C
Q 002209 490 S 490 (953)
Q Consensus 490 ~ 490 (953)
.
T Consensus 381 ~ 381 (440)
T KOG0302|consen 381 A 381 (440)
T ss_pred C
Confidence 4
No 412
>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.26 E-value=0.86 Score=51.14 Aligned_cols=206 Identities=11% Similarity=0.100 Sum_probs=108.1
Q ss_pred eceEEEEccCCCCCCceeeeecCCCCCcccceEeccCCCeEEEEEeeccccCCCCcceEEEEECCCCceeecccCCCccc
Q 002209 163 TGIGIHQLFPDGKLGQEIEIQGFPDGAKLNFVTWSQDGKHLAFSIRIDAEDSSSSKLRVWVADVDTGKARPLFQSPDIYL 242 (953)
Q Consensus 163 ~~i~i~~~~~~g~~~~~~~l~~~~~~~~~~~~~wSPDG~~laf~~~~~~~~~~~~~~~l~~~d~~~g~~~~lt~~~~~~~ 242 (953)
+++.||+-.+. ..-+...++. ..++...|-+--+||+..+ ...+|.+++.++++....+......
T Consensus 35 G~V~IWnyetq-tmVksfeV~~----~PvRa~kfiaRknWiv~Gs---------DD~~IrVfnynt~ekV~~FeAH~Dy- 99 (794)
T KOG0276|consen 35 GDVQIWNYETQ-TMVKSFEVSE----VPVRAAKFIARKNWIVTGS---------DDMQIRVFNYNTGEKVKTFEAHSDY- 99 (794)
T ss_pred CeeEEEecccc-eeeeeeeecc----cchhhheeeeccceEEEec---------CCceEEEEecccceeeEEeeccccc-
Confidence 46788887431 1112223332 2577778888888888843 4778888888887654443322222
Q ss_pred cccccceEEecCCeEEEEEecCCCCCCCCCCCCCCCCceeecCCCccccchhhhhhcCCcchhhhhhhhccceEEEEEcC
Q 002209 243 NAIFDNFVWVNNSTLLVCTIPLLRGDPPKKPLVPLGPKMQSNEKRDIIQVRTFQDLLKDEYDEDLFDYYATTQLVLVSLD 322 (953)
Q Consensus 243 ~~~~~~~~wspDg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~l~~~~~~ 322 (953)
+..++-.|.--.+..+ ..| ..-.+|.++-.
T Consensus 100 ---IR~iavHPt~P~vLts----------------------------------------SDD-------m~iKlW~we~~ 129 (794)
T KOG0276|consen 100 ---IRSIAVHPTLPYVLTS----------------------------------------SDD-------MTIKLWDWENE 129 (794)
T ss_pred ---eeeeeecCCCCeEEec----------------------------------------CCc-------cEEEEeeccCc
Confidence 5555555655444433 111 22334444321
Q ss_pred CceeEeCCC--CcccccccCC-CCcEEEEEEecCCccccccCCCCCcceEEEeccCceE-EEeccCCCcccCCccccccc
Q 002209 323 GTVKEIGPP--AVYTSLDPSP-DEKYILISSIHRPYSFIVPCGRFPRQVGVWTTDGIFV-RELCDLPLAEDIPIAFNSVR 398 (953)
Q Consensus 323 g~~~~l~~~--~~~~~~~~Sp-DG~~l~~~~~~~~~~~~~~~~~~~~~i~~~d~~g~~~-~~l~~~~~~~~~p~~~~~~~ 398 (953)
=...+..++ -.+..++|.| |-...|..+.+ ++|.+|.+..... ..+. ++.
T Consensus 130 wa~~qtfeGH~HyVMqv~fnPkD~ntFaS~sLD-------------rTVKVWslgs~~~nfTl~-------------gHe 183 (794)
T KOG0276|consen 130 WACEQTFEGHEHYVMQVAFNPKDPNTFASASLD-------------RTVKVWSLGSPHPNFTLE-------------GHE 183 (794)
T ss_pred eeeeeEEcCcceEEEEEEecCCCccceeeeecc-------------ccEEEEEcCCCCCceeee-------------ccc
Confidence 133333333 6678889999 66666666644 3899998864321 1222 333
Q ss_pred cCccceeeccCCCCceEEEEeccCCCcccccccCCeEEEEecCCCCCCCceEEeecccccCCeeeccCCceEEE
Q 002209 399 KGMRSINWRSDKPSTLYWAETQDGGDAKVEVTPRDIIYTQQAEPVQGEGPEILHKLDLRYGGISWCDDSLALVY 472 (953)
Q Consensus 399 ~~~~~~~wspDg~~i~~~~~~~~~~~~~~~~~~~~~l~~~d~~~~~g~~~~~l~~~~~~~~~~~~SpDg~~l~~ 472 (953)
.|+.-+.+-+-|.+=+..+ . .....+-+||. .+..-.+.|..+..+++.+.|.|.=-.|+.
T Consensus 184 kGVN~Vdyy~~gdkpylIs-g----------aDD~tiKvWDy--Qtk~CV~TLeGHt~Nvs~v~fhp~lpiiis 244 (794)
T KOG0276|consen 184 KGVNCVDYYTGGDKPYLIS-G----------ADDLTIKVWDY--QTKSCVQTLEGHTNNVSFVFFHPELPIIIS 244 (794)
T ss_pred cCcceEEeccCCCcceEEe-c----------CCCceEEEeec--chHHHHHHhhcccccceEEEecCCCcEEEE
Confidence 4555555555443322221 1 22335677775 222223445566666666666554333333
No 413
>KOG2321 consensus WD40 repeat protein [General function prediction only]
Probab=96.24 E-value=0.54 Score=52.15 Aligned_cols=117 Identities=11% Similarity=0.205 Sum_probs=68.4
Q ss_pred cceEEEEEc-CCc-eeEeCCC-CcccccccCCCCcEEEEEEecCCccccccCCCCCcceEEEeccCce-EEEe------c
Q 002209 313 TTQLVLVSL-DGT-VKEIGPP-AVYTSLDPSPDEKYILISSIHRPYSFIVPCGRFPRQVGVWTTDGIF-VREL------C 382 (953)
Q Consensus 313 ~~~l~~~~~-~g~-~~~l~~~-~~~~~~~~SpDG~~l~~~~~~~~~~~~~~~~~~~~~i~~~d~~g~~-~~~l------~ 382 (953)
...||+++| .|. ...+... +.+..+..++--..|++...+ +.+..||...+. +..| .
T Consensus 154 g~evYRlNLEqGrfL~P~~~~~~~lN~v~in~~hgLla~Gt~~-------------g~VEfwDpR~ksrv~~l~~~~~v~ 220 (703)
T KOG2321|consen 154 GSEVYRLNLEQGRFLNPFETDSGELNVVSINEEHGLLACGTED-------------GVVEFWDPRDKSRVGTLDAASSVN 220 (703)
T ss_pred CcceEEEEccccccccccccccccceeeeecCccceEEecccC-------------ceEEEecchhhhhheeeecccccC
Confidence 357899999 774 3333333 566677778777777766533 378888886432 2222 2
Q ss_pred cCCCcccCCccccccccCccceeeccCCCCceEEEEeccCCCcccccccCCeEEEEecCCCCCCCceEEeeccc--ccCC
Q 002209 383 DLPLAEDIPIAFNSVRKGMRSINWRSDKPSTLYWAETQDGGDAKVEVTPRDIIYTQQAEPVQGEGPEILHKLDL--RYGG 460 (953)
Q Consensus 383 ~~~~~~~~p~~~~~~~~~~~~~~wspDg~~i~~~~~~~~~~~~~~~~~~~~~l~~~d~~~~~g~~~~~l~~~~~--~~~~ 460 (953)
.+++.... ..+.++.|+-||=.++.. ...+.++++|+ -..++-.+-.+.+ .+..
T Consensus 221 s~pg~~~~--------~svTal~F~d~gL~~aVG-------------ts~G~v~iyDL---Ra~~pl~~kdh~~e~pi~~ 276 (703)
T KOG2321|consen 221 SHPGGDAA--------PSVTALKFRDDGLHVAVG-------------TSTGSVLIYDL---RASKPLLVKDHGYELPIKK 276 (703)
T ss_pred CCcccccc--------CcceEEEecCCceeEEee-------------ccCCcEEEEEc---ccCCceeecccCCccceee
Confidence 22222111 235678999998666665 44668999997 4444444443332 3445
Q ss_pred eeeccC
Q 002209 461 ISWCDD 466 (953)
Q Consensus 461 ~~~SpD 466 (953)
+.|-+.
T Consensus 277 l~~~~~ 282 (703)
T KOG2321|consen 277 LDWQDT 282 (703)
T ss_pred eccccc
Confidence 677554
No 414
>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]
Probab=96.23 E-value=0.91 Score=55.11 Aligned_cols=41 Identities=17% Similarity=0.216 Sum_probs=30.3
Q ss_pred cceEEEEEc-CCceeEeCCC-CcccccccCCCCcEEEEEEecC
Q 002209 313 TTQLVLVSL-DGTVKEIGPP-AVYTSLDPSPDEKYILISSIHR 353 (953)
Q Consensus 313 ~~~l~~~~~-~g~~~~l~~~-~~~~~~~~SpDG~~l~~~~~~~ 353 (953)
.+.|.++|. +.....++.- .++...+||||++.+++...+.
T Consensus 89 ~G~iilvd~et~~~eivg~vd~GI~aaswS~Dee~l~liT~~~ 131 (1265)
T KOG1920|consen 89 LGDIILVDPETLELEIVGNVDNGISAASWSPDEELLALITGRQ 131 (1265)
T ss_pred CCcEEEEcccccceeeeeeccCceEEEeecCCCcEEEEEeCCc
Confidence 355667777 6655555544 7888999999999999998543
No 415
>PF03096 Ndr: Ndr family; InterPro: IPR004142 This family consists of proteins from different gene families: Ndr1/RTP/Drg1, Ndr2, and Ndr3. Their similarity was previously noted []. The precise molecular and cellular function of members of this family is still unknown, yet they are known to be involved in cellular differentiation events. The Ndr1 group was the first to be discovered. Their expression is repressed by the proto-oncogenes N-myc and c-myc, and in line with this observation, Ndr1 protein expression is down-regulated in neoplastic cells, and is reactivated when differentiation is induced by chemicals such as retinoic acid. Ndr2 and Ndr3 expression is not under the control of N-myc or c-myc. Ndr1 expression is also activated by several chemicals: tunicamycin and homocysteine induce Ndr1 in human umbilical endothelial cells; nickel induces Ndr1 in several cell types. Members of this family are found in wide variety of multicellular eukaryotes, including an Ndr1 type protein in Helianthus annuus (Common sunflower), known as Sf21. Interestingly, the highest scoring matches in the noise are all alpha/beta hydrolases (IPR000073 from INTERPRO), suggesting that this family may have an enzymatic function.; PDB: 2QMQ_A 2XMR_B 2XMQ_B 2XMS_A.
Probab=96.22 E-value=0.21 Score=51.81 Aligned_cols=221 Identities=16% Similarity=0.142 Sum_probs=112.6
Q ss_pred EEcCCCcEEEEEEEcCCCCCCCCCCCccEEEEeCCCCCcCcCCCCcccCCCCCCCCccchHHHHHHHcCcEEEEcCCCCC
Q 002209 644 YQRKDGVQLSATLYLPPGYDPSKDGPLPCLFWSYPGEFKSKDAAGQVRGSPNEFPRIGSTSVLLWLARGFAILGGPTTPI 723 (953)
Q Consensus 644 ~~~~dg~~~~~~l~~P~~~~~~~~~~~P~vv~~hGg~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~G~~V~~~~~~~~ 723 (953)
+++.-| .++++++-.. +++.|++|-.|--..+.. ..|..+-.........+.|.|+-++..|.
T Consensus 4 v~t~~G-~v~V~v~G~~------~~~kp~ilT~HDvGlNh~----------scF~~ff~~~~m~~i~~~f~i~Hi~aPGq 66 (283)
T PF03096_consen 4 VETPYG-SVHVTVQGDP------KGNKPAILTYHDVGLNHK----------SCFQGFFNFEDMQEILQNFCIYHIDAPGQ 66 (283)
T ss_dssp EEETTE-EEEEEEESS--------TTS-EEEEE--TT--HH----------HHCHHHHCSHHHHHHHTTSEEEEEE-TTT
T ss_pred eccCce-EEEEEEEecC------CCCCceEEEeccccccch----------HHHHHHhcchhHHHHhhceEEEEEeCCCC
Confidence 344444 6777777432 124799999986211100 01211111122233456799988555332
Q ss_pred CCCCChhhhhh----hHHHHHHHHHHHHHHHHHcCCCCCCcEEEEEeChHHHHHHHHHHhCCCcccEEEEcccCCCC---
Q 002209 724 IGEGDEEANDR----FVEQLVACAEAAVEEVVRRGVAHPSKIAVGGHSYGAFMTANLLAHAPHLFCCGIARSGAYNR--- 796 (953)
Q Consensus 724 ~G~G~~~~~~~----~~~~~~~D~~~~~~~l~~~~~~d~~~i~l~G~S~GG~~a~~~a~~~p~~~~a~v~~~~~~d~--- 796 (953)
..|....+.. ..+++.+++..+++++. + +.+..+|--+|+++-+.+|..+|+++-+.|++.+....
T Consensus 67 -e~ga~~~p~~y~yPsmd~LAe~l~~Vl~~f~----l--k~vIg~GvGAGAnIL~rfAl~~p~~V~GLiLvn~~~~~~gw 139 (283)
T PF03096_consen 67 -EEGAATLPEGYQYPSMDQLAEMLPEVLDHFG----L--KSVIGFGVGAGANILARFALKHPERVLGLILVNPTCTAAGW 139 (283)
T ss_dssp -STT-----TT-----HHHHHCTHHHHHHHHT---------EEEEEETHHHHHHHHHHHHSGGGEEEEEEES---S---H
T ss_pred -CCCcccccccccccCHHHHHHHHHHHHHhCC----c--cEEEEEeeccchhhhhhccccCccceeEEEEEecCCCCccH
Confidence 2233323333 24556666666666652 2 46899999999999999999999999999999875431
Q ss_pred -----------CCCCcCccccc--chhh---------h-------------------h----HHHHHhcCcc-cccCCCC
Q 002209 797 -----------TLTPFGFQNED--RTLW---------E-------------------A----TSTYVEMSPF-MSANKLK 830 (953)
Q Consensus 797 -----------~~~~~~~~~~~--~~~~---------~-------------------~----~~~~~~~sp~-~~~~~i~ 830 (953)
.+...++.... ...| . + .+.|..+..+ .......
T Consensus 140 ~Ew~~~K~~~~~L~~~gmt~~~~d~Ll~h~Fg~~~~~~n~Dlv~~yr~~l~~~~Np~Nl~~f~~sy~~R~DL~~~~~~~~ 219 (283)
T PF03096_consen 140 MEWFYQKLSSWLLYSYGMTSSVKDYLLWHYFGKEEEENNSDLVQTYRQHLDERINPKNLALFLNSYNSRTDLSIERPSLG 219 (283)
T ss_dssp HHHHHHHHH-------CTTS-HHHHHHHHHS-HHHHHCT-HHHHHHHHHHHT-TTHHHHHHHHHHHHT-----SECTTCC
T ss_pred HHHHHHHHhcccccccccccchHHhhhhcccccccccccHHHHHHHHHHHhcCCCHHHHHHHHHHHhccccchhhcCCCC
Confidence 11111111000 0000 0 0 0111122222 2334557
Q ss_pred CcEEEEEeCCCCCCCCchHHHHHHHHHHHhCCCcEEEEEeCCCCccCCCcccHHHHHHHHHHHHH
Q 002209 831 KPILLVHGEEDNNSGTLTMQSDRFFNALKGHGALCRLVILPFESHGYAARESIMHVLWETDRWLQ 895 (953)
Q Consensus 831 ~P~Li~~G~~D~~v~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~H~~~~~~~~~~~~~~i~~fl~ 895 (953)
+|+|++.|+.-.. .+.+.+++.+|.. ....++..+++|=... .+....+.+.+.=|++
T Consensus 220 c~vLlvvG~~Sp~----~~~vv~~ns~Ldp--~~ttllkv~dcGglV~-eEqP~klaea~~lFlQ 277 (283)
T PF03096_consen 220 CPVLLVVGDNSPH----VDDVVEMNSKLDP--TKTTLLKVADCGGLVL-EEQPGKLAEAFKLFLQ 277 (283)
T ss_dssp S-EEEEEETTSTT----HHHHHHHHHHS-C--CCEEEEEETT-TT-HH-HH-HHHHHHHHHHHHH
T ss_pred CCeEEEEecCCcc----hhhHHHHHhhcCc--ccceEEEecccCCccc-ccCcHHHHHHHHHHHc
Confidence 9999999998866 5778899998854 3578999998765442 4555556555555544
No 416
>KOG0290 consensus Conserved WD40 repeat-containing protein AN11 [Function unknown]
Probab=96.18 E-value=0.97 Score=45.99 Aligned_cols=239 Identities=16% Similarity=0.164 Sum_probs=125.6
Q ss_pred cccceEec--cCC-CeEEEEEeeccccCCCCcceEEEEECCCCceeecccCCCccccccccceEEecCCeEEEEEecCCC
Q 002209 190 KLNFVTWS--QDG-KHLAFSIRIDAEDSSSSKLRVWVADVDTGKARPLFQSPDIYLNAIFDNFVWVNNSTLLVCTIPLLR 266 (953)
Q Consensus 190 ~~~~~~wS--PDG-~~laf~~~~~~~~~~~~~~~l~~~d~~~g~~~~lt~~~~~~~~~~~~~~~wspDg~~l~~~~~~~~ 266 (953)
......|| ||. -+||..+-.+ .-+...+|.-.+.++++.......+-. ..+.-+.|.||.+-.+-
T Consensus 46 ~lya~~Ws~~~~~~~rla~gS~~E---e~~Nkvqiv~ld~~s~e~~~~a~fd~~---YP~tK~~wiPd~~g~~p------ 113 (364)
T KOG0290|consen 46 PLYAMNWSVRPDKKFRLAVGSFIE---EYNNKVQIVQLDEDSGELVEDANFDHP---YPVTKLMWIPDSKGVYP------ 113 (364)
T ss_pred ceeeeccccCCCcceeEEEeeecc---ccCCeeEEEEEccCCCceeccCCCCCC---CCccceEecCCccccCc------
Confidence 45556777 443 4566544322 233466777777778876554432221 12457788888753320
Q ss_pred CCCCCCCCCCCCCceeecCCCccccchhhhhhcCCcchhhhhhhhccceEEEEEc-CCceeE---eC-----CC-Ccccc
Q 002209 267 GDPPKKPLVPLGPKMQSNEKRDIIQVRTFQDLLKDEYDEDLFDYYATTQLVLVSL-DGTVKE---IG-----PP-AVYTS 336 (953)
Q Consensus 267 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~l~~~~~-~g~~~~---l~-----~~-~~~~~ 336 (953)
|++.... ..-+||+++. +++... +. +. +..++
T Consensus 114 ------------------------------dlLATs~--------D~LRlWri~~ee~~~~~~~~L~~~kns~~~aPlTS 155 (364)
T KOG0290|consen 114 ------------------------------DLLATSS--------DFLRLWRIGDEESRVELQSVLNNNKNSEFCAPLTS 155 (364)
T ss_pred ------------------------------chhhccc--------CeEEEEeccCcCCceehhhhhccCcccccCCcccc
Confidence 1111111 1235666664 332221 11 11 56788
Q ss_pred cccCC-CCcEEEEEEecCCccccccCCCCCcceEEEeccCce----EEEeccCCCcccCCccccccccCccceeeccCCC
Q 002209 337 LDPSP-DEKYILISSIHRPYSFIVPCGRFPRQVGVWTTDGIF----VRELCDLPLAEDIPIAFNSVRKGMRSINWRSDKP 411 (953)
Q Consensus 337 ~~~Sp-DG~~l~~~~~~~~~~~~~~~~~~~~~i~~~d~~g~~----~~~l~~~~~~~~~p~~~~~~~~~~~~~~wspDg~ 411 (953)
+.|.. |-++|..++.+. +-.+||++.+. .++|..+. ..+..++|+.+|.
T Consensus 156 FDWne~dp~~igtSSiDT-------------TCTiWdie~~~~~~vkTQLIAHD-------------KEV~DIaf~~~s~ 209 (364)
T KOG0290|consen 156 FDWNEVDPNLIGTSSIDT-------------TCTIWDIETGVSGTVKTQLIAHD-------------KEVYDIAFLKGSR 209 (364)
T ss_pred cccccCCcceeEeecccC-------------eEEEEEEeeccccceeeEEEecC-------------cceeEEEeccCcc
Confidence 89987 666666666444 67789998652 23444332 3456788988665
Q ss_pred CceEEEEeccCCCcccccccCCeEEEEecCCCCCCCceEEeecc---cccCCeeeccCC-ceEEEEEecccCceEEEEEc
Q 002209 412 STLYWAETQDGGDAKVEVTPRDIIYTQQAEPVQGEGPEILHKLD---LRYGGISWCDDS-LALVYESWYKTRRTRTWVIS 487 (953)
Q Consensus 412 ~i~~~~~~~~~~~~~~~~~~~~~l~~~d~~~~~g~~~~~l~~~~---~~~~~~~~SpDg-~~l~~~~~~~~~~~~l~~~d 487 (953)
.+ |. .++..+.+.++|+..++ ..+.+...+ ...-.++|++.. ++++....+. .++.++|
T Consensus 210 ~~-FA-----------SvgaDGSvRmFDLR~le--HSTIIYE~p~~~~pLlRLswnkqDpnymATf~~dS---~~V~iLD 272 (364)
T KOG0290|consen 210 DV-FA-----------SVGADGSVRMFDLRSLE--HSTIIYEDPSPSTPLLRLSWNKQDPNYMATFAMDS---NKVVILD 272 (364)
T ss_pred ce-EE-----------EecCCCcEEEEEecccc--cceEEecCCCCCCcceeeccCcCCchHHhhhhcCC---ceEEEEE
Confidence 43 33 12456678888862111 122232222 223346677643 4444322221 2677777
Q ss_pred CCCCCCCcEEeecCCCccccCCCCCCCeEeccCCCEEEEEe
Q 002209 488 PGSKDVAPRILFDRSSEDVYSDPGSPMMRRTSTGTYVIAKI 528 (953)
Q Consensus 488 ~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~SpDG~~l~~~~ 528 (953)
..-. ..+..-...+...+.+ ++|.|-.+.-+...
T Consensus 273 iR~P-~tpva~L~~H~a~VNg------IaWaPhS~~hicta 306 (364)
T KOG0290|consen 273 IRVP-CTPVARLRNHQASVNG------IAWAPHSSSHICTA 306 (364)
T ss_pred ecCC-CcceehhhcCcccccc------eEecCCCCceeeec
Confidence 7655 2444444555555555 88999877655554
No 417
>COG3391 Uncharacterized conserved protein [Function unknown]
Probab=96.15 E-value=1.1 Score=50.21 Aligned_cols=159 Identities=11% Similarity=-0.009 Sum_probs=96.7
Q ss_pred cccceEeccCCCeEEEEEeeccccCCCCcceEEEEECCCCceeecccCCCccccccccceEEecCCeEEEEEecCCCCCC
Q 002209 190 KLNFVTWSQDGKHLAFSIRIDAEDSSSSKLRVWVADVDTGKARPLFQSPDIYLNAIFDNFVWVNNSTLLVCTIPLLRGDP 269 (953)
Q Consensus 190 ~~~~~~wSPDG~~laf~~~~~~~~~~~~~~~l~~~d~~~g~~~~lt~~~~~~~~~~~~~~~wspDg~~l~~~~~~~~~~~ 269 (953)
......++|||+.++.... +.....++++|..+++.......... -...+.+|+|+.++...
T Consensus 117 ~P~~~~~~~~~~~vYV~n~------~~~~~~vsvid~~t~~~~~~~~vG~~-----P~~~a~~p~g~~vyv~~------- 178 (381)
T COG3391 117 GPVGLAVDPDGKYVYVANA------GNGNNTVSVIDAATNKVTATIPVGNT-----PTGVAVDPDGNKVYVTN------- 178 (381)
T ss_pred CCceEEECCCCCEEEEEec------ccCCceEEEEeCCCCeEEEEEecCCC-----cceEEECCCCCeEEEEe-------
Confidence 5677899999999887542 11468899999988776544322221 23688999999888761
Q ss_pred CCCCCCCCCCceeecCCCccccchhhhhhcCCcchhhhhhhhccceEEEEEc-CCceeE------eCCCCcccccccCCC
Q 002209 270 PKKPLVPLGPKMQSNEKRDIIQVRTFQDLLKDEYDEDLFDYYATTQLVLVSL-DGTVKE------IGPPAVYTSLDPSPD 342 (953)
Q Consensus 270 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~l~~~~~-~g~~~~------l~~~~~~~~~~~SpD 342 (953)
...+.|..++. +-...+ +........+.++||
T Consensus 179 -----------------------------------------~~~~~v~vi~~~~~~v~~~~~~~~~~~~~~P~~i~v~~~ 217 (381)
T COG3391 179 -----------------------------------------SDDNTVSVIDTSGNSVVRGSVGSLVGVGTGPAGIAVDPD 217 (381)
T ss_pred -----------------------------------------cCCCeEEEEeCCCcceeccccccccccCCCCceEEECCC
Confidence 02345667776 333332 222244567889999
Q ss_pred CcEEEEEEecCCccccccCCCCCcceEEEeccCceEEEeccCCCcccCCccccccccCccceeeccCCCCceEEEEeccC
Q 002209 343 EKYILISSIHRPYSFIVPCGRFPRQVGVWTTDGIFVRELCDLPLAEDIPIAFNSVRKGMRSINWRSDKPSTLYWAETQDG 422 (953)
Q Consensus 343 G~~l~~~~~~~~~~~~~~~~~~~~~i~~~d~~g~~~~~l~~~~~~~~~p~~~~~~~~~~~~~~wspDg~~i~~~~~~~~~ 422 (953)
|+++....... ....+...|...+.......... .. ....+..+|+|+.++.. .
T Consensus 218 g~~~yV~~~~~----------~~~~v~~id~~~~~v~~~~~~~~----------~~-~~~~v~~~p~g~~~yv~-~---- 271 (381)
T COG3391 218 GNRVYVANDGS----------GSNNVLKIDTATGNVTATDLPVG----------SG-APRGVAVDPAGKAAYVA-N---- 271 (381)
T ss_pred CCEEEEEeccC----------CCceEEEEeCCCceEEEeccccc----------cC-CCCceeECCCCCEEEEE-e----
Confidence 99887765332 12367777777655444311110 00 23467899999865544 1
Q ss_pred CCcccccccCCeEEEEec
Q 002209 423 GDAKVEVTPRDIIYTQQA 440 (953)
Q Consensus 423 ~~~~~~~~~~~~l~~~d~ 440 (953)
...+.+.++|.
T Consensus 272 -------~~~~~V~vid~ 282 (381)
T COG3391 272 -------SQGGTVSVIDG 282 (381)
T ss_pred -------cCCCeEEEEeC
Confidence 12456777773
No 418
>KOG0302 consensus Ribosome Assembly protein [General function prediction only]
Probab=96.06 E-value=0.1 Score=54.65 Aligned_cols=102 Identities=17% Similarity=0.192 Sum_probs=59.3
Q ss_pred ceEEecCCCCCCc-ceeeeeceEEEEccCCCCCC-ceeeeecCCCCCcccceEeccCCCeEEEEEeeccccCCCCcceEE
Q 002209 145 AGLRIDGKCNTRS-RMSFYTGIGIHQLFPDGKLG-QEIEIQGFPDGAKLNFVTWSQDGKHLAFSIRIDAEDSSSSKLRVW 222 (953)
Q Consensus 145 ~~~~~~~~~~~~~-~~~~~~~i~i~~~~~~g~~~-~~~~l~~~~~~~~~~~~~wSPDG~~laf~~~~~~~~~~~~~~~l~ 222 (953)
.++.++|...++. ..-...+|++|...+ |.-. ..+.+++++ ..+....|||.-+.++++..- ...|.
T Consensus 215 y~LdWSp~~~g~LlsGDc~~~I~lw~~~~-g~W~vd~~Pf~gH~--~SVEDLqWSptE~~vfaScS~--------DgsIr 283 (440)
T KOG0302|consen 215 YGLDWSPIKTGRLLSGDCVKGIHLWEPST-GSWKVDQRPFTGHT--KSVEDLQWSPTEDGVFASCSC--------DGSIR 283 (440)
T ss_pred eeeecccccccccccCccccceEeeeecc-CceeecCccccccc--cchhhhccCCccCceEEeeec--------CceEE
Confidence 4456666444322 122336899998855 4322 234555533 468899999998888876542 34566
Q ss_pred EEECCCCc--eeecccCCCccccccccceEEecCCeEEEEE
Q 002209 223 VADVDTGK--ARPLFQSPDIYLNAIFDNFVWVNNSTLLVCT 261 (953)
Q Consensus 223 ~~d~~~g~--~~~lt~~~~~~~~~~~~~~~wspDg~~l~~~ 261 (953)
++|+..+. +.-.+.. .++.+.-+.|+-+-..|++.
T Consensus 284 IWDiRs~~~~~~~~~kA----h~sDVNVISWnr~~~lLasG 320 (440)
T KOG0302|consen 284 IWDIRSGPKKAAVSTKA----HNSDVNVISWNRREPLLASG 320 (440)
T ss_pred EEEecCCCccceeEeec----cCCceeeEEccCCcceeeec
Confidence 66666652 2222211 22337788898776666654
No 419
>KOG0646 consensus WD40 repeat protein [General function prediction only]
Probab=96.05 E-value=0.11 Score=55.89 Aligned_cols=60 Identities=7% Similarity=0.105 Sum_probs=42.5
Q ss_pred CcccceEeccCCCeEEEEEeeccccCCCCcceEEEEECCCCceeecccCCCccccccccceEEecCCeEEEEE
Q 002209 189 AKLNFVTWSQDGKHLAFSIRIDAEDSSSSKLRVWVADVDTGKARPLFQSPDIYLNAIFDNFVWVNNSTLLVCT 261 (953)
Q Consensus 189 ~~~~~~~wSPDG~~laf~~~~~~~~~~~~~~~l~~~d~~~g~~~~lt~~~~~~~~~~~~~~~wspDg~~l~~~ 261 (953)
+.+....=+|+|.+|+- +....+||+|.+.+|....+....-.. +.-+.|+.||..|+.+
T Consensus 82 g~v~al~s~n~G~~l~a---------g~i~g~lYlWelssG~LL~v~~aHYQ~----ITcL~fs~dgs~iiTg 141 (476)
T KOG0646|consen 82 GPVHALASSNLGYFLLA---------GTISGNLYLWELSSGILLNVLSAHYQS----ITCLKFSDDGSHIITG 141 (476)
T ss_pred cceeeeecCCCceEEEe---------ecccCcEEEEEeccccHHHHHHhhccc----eeEEEEeCCCcEEEec
Confidence 34677788999988775 224679999999999864443222211 5678899999998865
No 420
>KOG1034 consensus Transcriptional repressor EED/ESC/FIE, required for transcriptional silencing, WD repeat superfamily [Transcription]
Probab=95.99 E-value=0.37 Score=49.74 Aligned_cols=85 Identities=13% Similarity=0.177 Sum_probs=58.0
Q ss_pred eceEEEEccCCCCCCceeeeecCCCCCcccceEeccCCCeEEEEEeeccccCCCCcceEEEEECCCCceeecccCCCccc
Q 002209 163 TGIGIHQLFPDGKLGQEIEIQGFPDGAKLNFVTWSQDGKHLAFSIRIDAEDSSSSKLRVWVADVDTGKARPLFQSPDIYL 242 (953)
Q Consensus 163 ~~i~i~~~~~~g~~~~~~~l~~~~~~~~~~~~~wSPDG~~laf~~~~~~~~~~~~~~~l~~~d~~~g~~~~lt~~~~~~~ 242 (953)
+-|+|.|+.. +. -...+.+ .|..++...+-|+.-+|+.+.. ++..|.++++++.....+..+-+ +.
T Consensus 115 GvIrVid~~~-~~--~~~~~~g--hG~sINeik~~p~~~qlvls~S--------kD~svRlwnI~~~~Cv~VfGG~e-gH 180 (385)
T KOG1034|consen 115 GVIRVIDVVS-GQ--CSKNYRG--HGGSINEIKFHPDRPQLVLSAS--------KDHSVRLWNIQTDVCVAVFGGVE-GH 180 (385)
T ss_pred eEEEEEecch-hh--hccceec--cCccchhhhcCCCCCcEEEEec--------CCceEEEEeccCCeEEEEecccc-cc
Confidence 5688888743 21 1233433 4457999999999877777543 35678888888888877765433 23
Q ss_pred cccccceEEecCCeEEEEE
Q 002209 243 NAIFDNFVWVNNSTLLVCT 261 (953)
Q Consensus 243 ~~~~~~~~wspDg~~l~~~ 261 (953)
...+-++.|++||.+|+..
T Consensus 181 rdeVLSvD~~~~gd~i~Sc 199 (385)
T KOG1034|consen 181 RDEVLSVDFSLDGDRIASC 199 (385)
T ss_pred cCcEEEEEEcCCCCeeecc
Confidence 3336689999999988855
No 421
>KOG1007 consensus WD repeat protein TSSC1, WD repeat superfamily [Function unknown]
Probab=95.96 E-value=0.33 Score=49.12 Aligned_cols=105 Identities=12% Similarity=0.121 Sum_probs=64.8
Q ss_pred cccccccCC--CCcEEEEEEecCCccccccCCCCCcceEEEeccCce-EEEeccCCCcccCCccccccccCccceeeccC
Q 002209 333 VYTSLDPSP--DEKYILISSIHRPYSFIVPCGRFPRQVGVWTTDGIF-VRELCDLPLAEDIPIAFNSVRKGMRSINWRSD 409 (953)
Q Consensus 333 ~~~~~~~Sp--DG~~l~~~~~~~~~~~~~~~~~~~~~i~~~d~~g~~-~~~l~~~~~~~~~p~~~~~~~~~~~~~~wspD 409 (953)
..++-+||| ||..++.+. ..+++-||+.+-. .-.|.+ .....++++.|.|+
T Consensus 172 ~ftsg~WspHHdgnqv~tt~--------------d~tl~~~D~RT~~~~~sI~d------------AHgq~vrdlDfNpn 225 (370)
T KOG1007|consen 172 SFTSGAWSPHHDGNQVATTS--------------DSTLQFWDLRTMKKNNSIED------------AHGQRVRDLDFNPN 225 (370)
T ss_pred eecccccCCCCccceEEEeC--------------CCcEEEEEccchhhhcchhh------------hhcceeeeccCCCC
Confidence 456778999 999998887 2378899987321 111111 11134578889998
Q ss_pred CCCceEEEEeccCCCcccccccCCeEEEEecCCCCCC-CceEEeecccccCCeeeccCCceEEEEEecc
Q 002209 410 KPSTLYWAETQDGGDAKVEVTPRDIIYTQQAEPVQGE-GPEILHKLDLRYGGISWCDDSLALVYESWYK 477 (953)
Q Consensus 410 g~~i~~~~~~~~~~~~~~~~~~~~~l~~~d~~~~~g~-~~~~l~~~~~~~~~~~~SpDg~~l~~~~~~~ 477 (953)
-+.++.. . +...-|.+||. .... ....+..+...+..+.|.|--..|+.+...+
T Consensus 226 kq~~lvt--~----------gDdgyvriWD~--R~tk~pv~el~~HsHWvW~VRfn~~hdqLiLs~~SD 280 (370)
T KOG1007|consen 226 KQHILVT--C----------GDDGYVRIWDT--RKTKFPVQELPGHSHWVWAVRFNPEHDQLILSGGSD 280 (370)
T ss_pred ceEEEEE--c----------CCCccEEEEec--cCCCccccccCCCceEEEEEEecCccceEEEecCCC
Confidence 8866554 1 33456778885 2222 2334556666667788888777776665433
No 422
>PF00450 Peptidase_S10: Serine carboxypeptidase; InterPro: IPR001563 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This group of serine peptidases belong to MEROPS peptidase family S10 (clan SC). The type example is carboxypeptidase Y from Saccharomyces cerevisiae (Baker's yeast) []. All known carboxypeptidases are either metallo carboxypeptidases or serine carboxypeptidases (3.4.16.5 from EC and 3.4.16.6 from EC). The catalytic activity of the serine carboxypeptidases, like that of the trypsin family serine proteases, is provided by a charge relay system involving an aspartic acid residue hydrogen-bonded to a histidine, which is itself hydrogen-bonded to a serine []. The sequences surrounding the active site serine and histidine residues are highly conserved in all the serine carboxypeptidases.; GO: 0004185 serine-type carboxypeptidase activity, 0006508 proteolysis; PDB: 1AC5_A 1WHS_B 3SC2_B 1WHT_A 1BCR_A 1BCS_A 1GXS_A 1IVY_A 1WPX_A 1YSC_A ....
Probab=95.87 E-value=0.033 Score=63.51 Aligned_cols=150 Identities=13% Similarity=0.068 Sum_probs=82.8
Q ss_pred EEEEEcCCCcEEEEEEEcCCCCCCCCCCCccEEEEeCCCCCcCcCCCCcccCCCCCCCCcc----chHHHHHHHcCcEEE
Q 002209 641 LIKYQRKDGVQLSATLYLPPGYDPSKDGPLPCLFWSYPGEFKSKDAAGQVRGSPNEFPRIG----STSVLLWLARGFAIL 716 (953)
Q Consensus 641 ~~~~~~~dg~~~~~~l~~P~~~~~~~~~~~P~vv~~hGg~~~~~~~~~~~~~~~~~~~~~~----~~~~~~la~~G~~V~ 716 (953)
.+.+....+..+..|++.-.+ ++. ..|+||++.|||..+.-......-||......+ ......|.+. ..+|
T Consensus 15 yl~~~~~~~~~lfyw~~~s~~-~~~---~~Pl~~wlnGGPG~SS~~g~f~e~GP~~~~~~~~~~l~~n~~sW~~~-an~l 89 (415)
T PF00450_consen 15 YLPVNDNENAHLFYWFFESRN-DPE---DDPLILWLNGGPGCSSMWGLFGENGPFRINPDGPYTLEDNPYSWNKF-ANLL 89 (415)
T ss_dssp EEEECTTTTEEEEEEEEE-SS-GGC---SS-EEEEEE-TTTB-THHHHHCTTSSEEEETTSTSEEEE-TT-GGGT-SEEE
T ss_pred EEecCCCCCcEEEEEEEEeCC-CCC---CccEEEEecCCceeccccccccccCceEEeecccccccccccccccc-cceE
Confidence 344544566788888885543 333 479999999999876544333334443333100 0111234444 4555
Q ss_pred EcCCCCCCCCCChhhhhh---hHHHHHHHHHHHHHHHH-HcCCCCCCcEEEEEeChHHHHHHHHHH----hC------CC
Q 002209 717 GGPTTPIIGEGDEEANDR---FVEQLVACAEAAVEEVV-RRGVAHPSKIAVGGHSYGAFMTANLLA----HA------PH 782 (953)
Q Consensus 717 ~~~~~~~~G~G~~~~~~~---~~~~~~~D~~~~~~~l~-~~~~~d~~~i~l~G~S~GG~~a~~~a~----~~------p~ 782 (953)
.+|..-.+|+........ ......+|+..++.... ..+.....++.|+|.||||..+-.+|. .. +-
T Consensus 90 ~iD~PvGtGfS~~~~~~~~~~~~~~~a~~~~~fl~~f~~~~p~~~~~~~yi~GESYgG~yvP~~a~~i~~~~~~~~~~~i 169 (415)
T PF00450_consen 90 FIDQPVGTGFSYGNDPSDYVWNDDQAAEDLYEFLQQFFQKFPEYRSNPLYIAGESYGGHYVPALASYILQQNKKGDQPKI 169 (415)
T ss_dssp EE--STTSTT-EESSGGGGS-SHHHHHHHHHHHHHHHHHHSGGGTTSEEEEEEETTHHHHHHHHHHHHHHHTCC--STTS
T ss_pred EEeecCceEEeeccccccccchhhHHHHHHHHHHHHhhhhhhhccCCCEEEEccccccccchhhHHhhhhcccccccccc
Confidence 545333345544433322 23556677777766543 345556679999999999998766554 22 22
Q ss_pred cccEEEEcccCCC
Q 002209 783 LFCCGIARSGAYN 795 (953)
Q Consensus 783 ~~~a~v~~~~~~d 795 (953)
.++++++..|+.+
T Consensus 170 nLkGi~IGng~~d 182 (415)
T PF00450_consen 170 NLKGIAIGNGWID 182 (415)
T ss_dssp EEEEEEEESE-SB
T ss_pred ccccceecCcccc
Confidence 4889999888755
No 423
>KOG2183 consensus Prolylcarboxypeptidase (angiotensinase C) [Posttranslational modification, protein turnover, chaperones; General function prediction only]
Probab=95.86 E-value=0.042 Score=58.55 Aligned_cols=56 Identities=27% Similarity=0.262 Sum_probs=48.3
Q ss_pred HHHHHHHHHHHHHHHHHcCCCCCCcEEEEEeChHHHHHHHHHHhCCCcccEEEEcc
Q 002209 736 VEQLVACAEAAVEEVVRRGVAHPSKIAVGGHSYGAFMTANLLAHAPHLFCCGIARS 791 (953)
Q Consensus 736 ~~~~~~D~~~~~~~l~~~~~~d~~~i~l~G~S~GG~~a~~~a~~~p~~~~a~v~~~ 791 (953)
.++...|....+..|++.......+|.++|.||||++++|+=.++|+.+.++.+.+
T Consensus 144 seQALADfA~ll~~lK~~~~a~~~pvIafGGSYGGMLaAWfRlKYPHiv~GAlAaS 199 (492)
T KOG2183|consen 144 SEQALADFAELLTFLKRDLSAEASPVIAFGGSYGGMLAAWFRLKYPHIVLGALAAS 199 (492)
T ss_pred HHHHHHHHHHHHHHHhhccccccCcEEEecCchhhHHHHHHHhcChhhhhhhhhcc
Confidence 46788999999999988766667899999999999999999999999887776554
No 424
>COG4814 Uncharacterized protein with an alpha/beta hydrolase fold [General function prediction only]
Probab=95.85 E-value=0.093 Score=52.36 Aligned_cols=146 Identities=15% Similarity=0.118 Sum_probs=88.6
Q ss_pred HHHHHHHHHHHHHcCCCCCCcEEEEEeChHHHHHHHHHHhCCC-----cccEEEEcccCCCCCCC-C------cCccccc
Q 002209 740 VACAEAAVEEVVRRGVAHPSKIAVGGHSYGAFMTANLLAHAPH-----LFCCGIARSGAYNRTLT-P------FGFQNED 807 (953)
Q Consensus 740 ~~D~~~~~~~l~~~~~~d~~~i~l~G~S~GG~~a~~~a~~~p~-----~~~a~v~~~~~~d~~~~-~------~~~~~~~ 807 (953)
..=+..++.+|.+++.+ .++-++||||||....+++..+.. .+.-.|.+++.++.... + ......
T Consensus 119 s~wlk~~msyL~~~Y~i--~k~n~VGhSmGg~~~~~Y~~~yg~dks~P~lnK~V~l~gpfN~~~l~~de~v~~v~~~~~- 195 (288)
T COG4814 119 SKWLKKAMSYLQKHYNI--PKFNAVGHSMGGLGLTYYMIDYGDDKSLPPLNKLVSLAGPFNVGNLVPDETVTDVLKDGP- 195 (288)
T ss_pred HHHHHHHHHHHHHhcCC--ceeeeeeeccccHHHHHHHHHhcCCCCCcchhheEEecccccccccCCCcchheeeccCc-
Confidence 34456788999998766 489999999999999988876521 36667777776661111 1 001000
Q ss_pred chhhhhHHHHHhcCcccccCCC--CCcEEEEEeCCC------CCCCCchHHHHHHHHHHHhCCCcEEEEEeCC--CCccC
Q 002209 808 RTLWEATSTYVEMSPFMSANKL--KKPILLVHGEED------NNSGTLTMQSDRFFNALKGHGALCRLVILPF--ESHGY 877 (953)
Q Consensus 808 ~~~~~~~~~~~~~sp~~~~~~i--~~P~Li~~G~~D------~~v~~~~~~~~~~~~~l~~~g~~~~~~~~~~--~~H~~ 877 (953)
+..-.....|.... ...+ +.-+|++.|+.| -.|| ...+...+..+.+.+..+.-.+|+| +-|.-
T Consensus 196 ~~~~t~y~~y~~~n----~k~v~~~~evl~IaGDl~dg~~tDG~Vp--~assls~~~lf~~~~ksy~e~~~~Gk~a~Hs~ 269 (288)
T COG4814 196 GLIKTPYYDYIAKN----YKKVSPNTEVLLIAGDLDDGKQTDGAVP--WASSLSIYHLFKKNGKSYIESLYKGKDARHSK 269 (288)
T ss_pred cccCcHHHHHHHhc----ceeCCCCcEEEEEecccccCCcCCCcee--chHhHHHHHHhccCcceeEEEeeeCCcchhhc
Confidence 00000011111111 1111 356899999764 5677 7888888888888877776667776 46754
Q ss_pred CCcccHHHHHHHHHHHHHH
Q 002209 878 AARESIMHVLWETDRWLQK 896 (953)
Q Consensus 878 ~~~~~~~~~~~~i~~fl~~ 896 (953)
. .+ ...+.+.+..||.+
T Consensus 270 l-he-n~~v~~yv~~FLw~ 286 (288)
T COG4814 270 L-HE-NPTVAKYVKNFLWE 286 (288)
T ss_pred c-CC-ChhHHHHHHHHhhc
Confidence 2 22 34566777777653
No 425
>COG3391 Uncharacterized conserved protein [Function unknown]
Probab=95.82 E-value=1.1 Score=50.17 Aligned_cols=206 Identities=11% Similarity=-0.013 Sum_probs=120.4
Q ss_pred ccceEeccCCCeEEEEEeeccccCCCCcceEEEEECCCCceeecccCCCccccccccceEEecCCeEEEEEecCCCCCCC
Q 002209 191 LNFVTWSQDGKHLAFSIRIDAEDSSSSKLRVWVADVDTGKARPLFQSPDIYLNAIFDNFVWVNNSTLLVCTIPLLRGDPP 270 (953)
Q Consensus 191 ~~~~~wSPDG~~laf~~~~~~~~~~~~~~~l~~~d~~~g~~~~lt~~~~~~~~~~~~~~~wspDg~~l~~~~~~~~~~~~ 270 (953)
......+++|+.++-... ....+.++|.++.+...-...+.. ...++++|||+.++++-...
T Consensus 76 p~~i~v~~~~~~vyv~~~--------~~~~v~vid~~~~~~~~~~~vG~~-----P~~~~~~~~~~~vYV~n~~~----- 137 (381)
T COG3391 76 PAGVAVNPAGNKVYVTTG--------DSNTVSVIDTATNTVLGSIPVGLG-----PVGLAVDPDGKYVYVANAGN----- 137 (381)
T ss_pred ccceeeCCCCCeEEEecC--------CCCeEEEEcCcccceeeEeeeccC-----CceEEECCCCCEEEEEeccc-----
Confidence 455678888987765432 256888888666544332222221 44789999999999871100
Q ss_pred CCCCCCCCCceeecCCCccccchhhhhhcCCcchhhhhhhhccceEEEEEc-CCceeEe-CCCCcccccccCCCCcEEEE
Q 002209 271 KKPLVPLGPKMQSNEKRDIIQVRTFQDLLKDEYDEDLFDYYATTQLVLVSL-DGTVKEI-GPPAVYTSLDPSPDEKYILI 348 (953)
Q Consensus 271 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~l~~~~~-~g~~~~l-~~~~~~~~~~~SpDG~~l~~ 348 (953)
....++++|. +++.... ..+......+++|||++++.
T Consensus 138 -----------------------------------------~~~~vsvid~~t~~~~~~~~vG~~P~~~a~~p~g~~vyv 176 (381)
T COG3391 138 -----------------------------------------GNNTVSVIDAATNKVTATIPVGNTPTGVAVDPDGNKVYV 176 (381)
T ss_pred -----------------------------------------CCceEEEEeCCCCeEEEEEecCCCcceEEECCCCCeEEE
Confidence 1246777777 5544333 22223478899999998887
Q ss_pred EEecCCccccccCCCCCcceEEEeccCceEEEeccCCCcccCCccccccccCccceeeccCCCCceEEEEeccCCCcccc
Q 002209 349 SSIHRPYSFIVPCGRFPRQVGVWTTDGIFVRELCDLPLAEDIPIAFNSVRKGMRSINWRSDKPSTLYWAETQDGGDAKVE 428 (953)
Q Consensus 349 ~~~~~~~~~~~~~~~~~~~i~~~d~~g~~~~~l~~~~~~~~~p~~~~~~~~~~~~~~wspDg~~i~~~~~~~~~~~~~~~ 428 (953)
.... .+.+.+.|.++....+ ...... .....++..+.++|||+.++.....
T Consensus 177 ~~~~------------~~~v~vi~~~~~~v~~-~~~~~~-------~~~~~~P~~i~v~~~g~~~yV~~~~--------- 227 (381)
T COG3391 177 TNSD------------DNTVSVIDTSGNSVVR-GSVGSL-------VGVGTGPAGIAVDPDGNRVYVANDG--------- 227 (381)
T ss_pred EecC------------CCeEEEEeCCCcceec-cccccc-------cccCCCCceEEECCCCCEEEEEecc---------
Confidence 7622 2377788876655443 221100 0112345679999999976554111
Q ss_pred cccCCeEEEEecCCCCCCCceEE--eecccccCCeeeccCCceEEEEEecccCceEEEEEcCCCC
Q 002209 429 VTPRDIIYTQQAEPVQGEGPEIL--HKLDLRYGGISWCDDSLALVYESWYKTRRTRTWVISPGSK 491 (953)
Q Consensus 429 ~~~~~~l~~~d~~~~~g~~~~~l--~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~l~~~d~~~~ 491 (953)
+....+..++. ..+..... .........+..+|+|+.++...... ..+.++|..+.
T Consensus 228 -~~~~~v~~id~---~~~~v~~~~~~~~~~~~~~v~~~p~g~~~yv~~~~~---~~V~vid~~~~ 285 (381)
T COG3391 228 -SGSNNVLKIDT---ATGNVTATDLPVGSGAPRGVAVDPAGKAAYVANSQG---GTVSVIDGATD 285 (381)
T ss_pred -CCCceEEEEeC---CCceEEEeccccccCCCCceeECCCCCEEEEEecCC---CeEEEEeCCCC
Confidence 11346777774 33332222 11111345688999999887765442 26888887663
No 426
>COG2319 FOG: WD40 repeat [General function prediction only]
Probab=95.82 E-value=1.8 Score=48.50 Aligned_cols=194 Identities=17% Similarity=0.181 Sum_probs=101.7
Q ss_pred ccceEe-ccCCCeEEEEEeeccccCCCCcceEEEEECCC-Cc-eeecccCCCccccccccceEEecCCeEEEEEecCCCC
Q 002209 191 LNFVTW-SQDGKHLAFSIRIDAEDSSSSKLRVWVADVDT-GK-ARPLFQSPDIYLNAIFDNFVWVNNSTLLVCTIPLLRG 267 (953)
Q Consensus 191 ~~~~~w-SPDG~~laf~~~~~~~~~~~~~~~l~~~d~~~-g~-~~~lt~~~~~~~~~~~~~~~wspDg~~l~~~~~~~~~ 267 (953)
+....+ ++++..++... ......+.+++..+ .. ...+..+... +..+.|+|+++.++....
T Consensus 112 ~~~~~~~~~~~~~~~~~~-------~~~d~~~~~~~~~~~~~~~~~~~~~~~~-----v~~~~~~~~~~~~~~~~~---- 175 (466)
T COG2319 112 VSKLALSSPDGNSILLAS-------SSLDGTVKLWDLSTPGKLIRTLEGHSES-----VTSLAFSPDGKLLASGSS---- 175 (466)
T ss_pred eeeEEEECCCcceEEecc-------CCCCccEEEEEecCCCeEEEEEecCccc-----EEEEEECCCCCEEEecCC----
Confidence 444555 88888444322 11234667777665 33 3333333332 567999999995554300
Q ss_pred CCCCCCCCCCCCceeecCCCccccchhhhhhcCCcchhhhhhhhccceEEEEEc-CCce-eEeCCC-CcccccccCCCCc
Q 002209 268 DPPKKPLVPLGPKMQSNEKRDIIQVRTFQDLLKDEYDEDLFDYYATTQLVLVSL-DGTV-KEIGPP-AVYTSLDPSPDEK 344 (953)
Q Consensus 268 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~l~~~~~-~g~~-~~l~~~-~~~~~~~~SpDG~ 344 (953)
....+..+++ .+.. ..+... ..+..++|+|+|+
T Consensus 176 --------------------------------------------~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~ 211 (466)
T COG2319 176 --------------------------------------------LDGTIKLWDLRTGKPLSTLAGHTDPVSSLAFSPDGG 211 (466)
T ss_pred --------------------------------------------CCCceEEEEcCCCceEEeeccCCCceEEEEEcCCcc
Confidence 0133445555 4333 333333 6788899999999
Q ss_pred EEEEEEecCCccccccCCCCCcceEEEeccCceEEE--eccCCCcccCCccccccccCccceeeccCCCCceEEEEeccC
Q 002209 345 YILISSIHRPYSFIVPCGRFPRQVGVWTTDGIFVRE--LCDLPLAEDIPIAFNSVRKGMRSINWRSDKPSTLYWAETQDG 422 (953)
Q Consensus 345 ~l~~~~~~~~~~~~~~~~~~~~~i~~~d~~g~~~~~--l~~~~~~~~~p~~~~~~~~~~~~~~wspDg~~i~~~~~~~~~ 422 (953)
.++..... .+.+.+||...+.... +..+. ... -..|+|++..++..
T Consensus 212 ~~~~~~~~------------d~~i~~wd~~~~~~~~~~~~~~~-------------~~~-~~~~~~~~~~~~~~------ 259 (466)
T COG2319 212 LLIASGSS------------DGTIRLWDLSTGKLLRSTLSGHS-------------DSV-VSSFSPDGSLLASG------ 259 (466)
T ss_pred eEEEEecC------------CCcEEEEECCCCcEEeeecCCCC-------------cce-eEeECCCCCEEEEe------
Confidence 44444111 2366688766332222 21111 010 11699999433322
Q ss_pred CCcccccccCCeEEEEecCCCCCCCc--eEEeecccccCCeeeccCCceEEEEEecccCceEEEEEcCCC
Q 002209 423 GDAKVEVTPRDIIYTQQAEPVQGEGP--EILHKLDLRYGGISWCDDSLALVYESWYKTRRTRTWVISPGS 490 (953)
Q Consensus 423 ~~~~~~~~~~~~l~~~d~~~~~g~~~--~~l~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~l~~~d~~~ 490 (953)
.....+.++++ ..... ..+..+...+..+.|+|++..++....+ ....+| +..+
T Consensus 260 -------~~d~~~~~~~~---~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~d--~~~~~~--~~~~ 315 (466)
T COG2319 260 -------SSDGTIRLWDL---RSSSSLLRTLSGHSSSVLSVAFSPDGKLLASGSSD--GTVRLW--DLET 315 (466)
T ss_pred -------cCCCcEEEeee---cCCCcEEEEEecCCccEEEEEECCCCCEEEEeeCC--CcEEEE--EcCC
Confidence 33456777775 22221 2222234455667899998888874433 224666 5554
No 427
>KOG2111 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=95.81 E-value=0.92 Score=46.82 Aligned_cols=103 Identities=17% Similarity=0.174 Sum_probs=64.8
Q ss_pred CCCeEEEEEeeccccCCCCcceEEEEECCCCce---eecccCCCccccccccceEEecCCeEEEEEecCCCCCCCCCCCC
Q 002209 199 DGKHLAFSIRIDAEDSSSSKLRVWVADVDTGKA---RPLFQSPDIYLNAIFDNFVWVNNSTLLVCTIPLLRGDPPKKPLV 275 (953)
Q Consensus 199 DG~~laf~~~~~~~~~~~~~~~l~~~d~~~g~~---~~lt~~~~~~~~~~~~~~~wspDg~~l~~~~~~~~~~~~~~~~~ 275 (953)
+-..|||-. ...++|-++|+...+. .-+-.+... +.-++..-+|..|+.++.
T Consensus 147 ~k~~LafPg--------~k~GqvQi~dL~~~~~~~p~~I~AH~s~-----Iacv~Ln~~Gt~vATaSt------------ 201 (346)
T KOG2111|consen 147 NKSLLAFPG--------FKTGQVQIVDLASTKPNAPSIINAHDSD-----IACVALNLQGTLVATAST------------ 201 (346)
T ss_pred CceEEEcCC--------CccceEEEEEhhhcCcCCceEEEcccCc-----eeEEEEcCCccEEEEecc------------
Confidence 345677743 3456788888776544 222222221 556778889998886510
Q ss_pred CCCCceeecCCCccccchhhhhhcCCcchhhhhhhhccceEEEEEc-CC-ceeEeCCC---CcccccccCCCCcEEEEEE
Q 002209 276 PLGPKMQSNEKRDIIQVRTFQDLLKDEYDEDLFDYYATTQLVLVSL-DG-TVKEIGPP---AVYTSLDPSPDEKYILISS 350 (953)
Q Consensus 276 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~l~~~~~-~g-~~~~l~~~---~~~~~~~~SpDG~~l~~~~ 350 (953)
...-|.+.|. +| ..+.+..+ ..+..++||||+.+|++++
T Consensus 202 ------------------------------------kGTLIRIFdt~~g~~l~E~RRG~d~A~iy~iaFSp~~s~LavsS 245 (346)
T KOG2111|consen 202 ------------------------------------KGTLIRIFDTEDGTLLQELRRGVDRADIYCIAFSPNSSWLAVSS 245 (346)
T ss_pred ------------------------------------CcEEEEEEEcCCCcEeeeeecCCchheEEEEEeCCCccEEEEEc
Confidence 1123445576 66 33444333 7788999999999999999
Q ss_pred ecCCccccccCCCCCcceEEEeccC
Q 002209 351 IHRPYSFIVPCGRFPRQVGVWTTDG 375 (953)
Q Consensus 351 ~~~~~~~~~~~~~~~~~i~~~d~~g 375 (953)
..+ ++.++.+..
T Consensus 246 dKg-------------TlHiF~l~~ 257 (346)
T KOG2111|consen 246 DKG-------------TLHIFSLRD 257 (346)
T ss_pred CCC-------------eEEEEEeec
Confidence 554 777777753
No 428
>KOG0281 consensus Beta-TrCP (transducin repeats containing)/Slimb proteins [Function unknown]
Probab=95.74 E-value=0.092 Score=54.10 Aligned_cols=213 Identities=17% Similarity=0.166 Sum_probs=114.0
Q ss_pred CCcceeeeeceEEEEccCCCCCCc-eeeeecCCCCCcccceEeccCCCeEEEEEeeccccCCCCcceEEEEECCCCceee
Q 002209 155 TRSRMSFYTGIGIHQLFPDGKLGQ-EIEIQGFPDGAKLNFVTWSQDGKHLAFSIRIDAEDSSSSKLRVWVADVDTGKARP 233 (953)
Q Consensus 155 ~~~~~~~~~~i~i~~~~~~g~~~~-~~~l~~~~~~~~~~~~~wSPDG~~laf~~~~~~~~~~~~~~~l~~~d~~~g~~~~ 233 (953)
.......+..|.|||.++ .. .+.|++++ +.+-...+ |.+.|+. ++....+.++|.++|++..
T Consensus 209 kiVSGlrDnTikiWD~n~----~~c~~~L~GHt--GSVLCLqy--d~rviis---------GSSDsTvrvWDv~tge~l~ 271 (499)
T KOG0281|consen 209 KIVSGLRDNTIKIWDKNS----LECLKILTGHT--GSVLCLQY--DERVIVS---------GSSDSTVRVWDVNTGEPLN 271 (499)
T ss_pred hhhcccccCceEEecccc----HHHHHhhhcCC--CcEEeeec--cceEEEe---------cCCCceEEEEeccCCchhh
Confidence 333344456789999843 22 34455544 23444444 5554443 4457788899999998754
Q ss_pred cccCCCccccccccceEEecCCeEEEEEecCCCCCCCCCCCCCCCCceeecCCCccccchhhhhhcCCcchhhhhhhhcc
Q 002209 234 LFQSPDIYLNAIFDNFVWVNNSTLLVCTIPLLRGDPPKKPLVPLGPKMQSNEKRDIIQVRTFQDLLKDEYDEDLFDYYAT 313 (953)
Q Consensus 234 lt~~~~~~~~~~~~~~~wspDg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~ 313 (953)
..-+.-.. +-.+.++ +|-.+-.+ .| ..
T Consensus 272 tlihHcea----VLhlrf~-ng~mvtcS-----------------------------------------kD-------rs 298 (499)
T KOG0281|consen 272 TLIHHCEA----VLHLRFS-NGYMVTCS-----------------------------------------KD-------RS 298 (499)
T ss_pred HHhhhcce----eEEEEEe-CCEEEEec-----------------------------------------CC-------ce
Confidence 43322211 3355554 34222222 01 12
Q ss_pred ceEEEEEc-CC-ceeE-eCCC-CcccccccCCCCcEEEEEEecCCccccccCCCCCcceEEEeccCceE-EEeccCCCcc
Q 002209 314 TQLVLVSL-DG-TVKE-IGPP-AVYTSLDPSPDEKYILISSIHRPYSFIVPCGRFPRQVGVWTTDGIFV-RELCDLPLAE 388 (953)
Q Consensus 314 ~~l~~~~~-~g-~~~~-l~~~-~~~~~~~~SpDG~~l~~~~~~~~~~~~~~~~~~~~~i~~~d~~g~~~-~~l~~~~~~~ 388 (953)
..+|.++. +. +.++ +... ..+..+.| |.|+|+.++.++ +|.+|+.++.+. +.|..+..
T Consensus 299 iaVWdm~sps~it~rrVLvGHrAaVNvVdf--d~kyIVsASgDR-------------TikvW~~st~efvRtl~gHkR-- 361 (499)
T KOG0281|consen 299 IAVWDMASPTDITLRRVLVGHRAAVNVVDF--DDKYIVSASGDR-------------TIKVWSTSTCEFVRTLNGHKR-- 361 (499)
T ss_pred eEEEeccCchHHHHHHHHhhhhhheeeecc--ccceEEEecCCc-------------eEEEEeccceeeehhhhcccc--
Confidence 23444443 21 2222 2223 55666666 467888877554 899999986654 44444321
Q ss_pred cCCccccccccCccceee-ccCCCCceEEEEeccCCCcccccccCCeEEEEecCCCCCCCceEEeecccccCCeeeccCC
Q 002209 389 DIPIAFNSVRKGMRSINW-RSDKPSTLYWAETQDGGDAKVEVTPRDIIYTQQAEPVQGEGPEILHKLDLRYGGISWCDDS 467 (953)
Q Consensus 389 ~~p~~~~~~~~~~~~~~w-spDg~~i~~~~~~~~~~~~~~~~~~~~~l~~~d~~~~~g~~~~~l~~~~~~~~~~~~SpDg 467 (953)
+++- --.|+.++-. +..+.|.+||+ ..|.-.+.|.+++.-+..+.| |.
T Consensus 362 --------------GIAClQYr~rlvVSG-------------SSDntIRlwdi--~~G~cLRvLeGHEeLvRciRF--d~ 410 (499)
T KOG0281|consen 362 --------------GIACLQYRDRLVVSG-------------SSDNTIRLWDI--ECGACLRVLEGHEELVRCIRF--DN 410 (499)
T ss_pred --------------cceehhccCeEEEec-------------CCCceEEEEec--cccHHHHHHhchHHhhhheee--cC
Confidence 1111 0112222111 44668889986 334445667777777777888 67
Q ss_pred ceEEEEEecccCceEEEEEc
Q 002209 468 LALVYESWYKTRRTRTWVIS 487 (953)
Q Consensus 468 ~~l~~~~~~~~~~~~l~~~d 487 (953)
++|+..+.++. .++|-+.
T Consensus 411 krIVSGaYDGk--ikvWdl~ 428 (499)
T KOG0281|consen 411 KRIVSGAYDGK--IKVWDLQ 428 (499)
T ss_pred ceeeeccccce--EEEEecc
Confidence 88888766553 2555544
No 429
>PF08386 Abhydrolase_4: TAP-like protein; InterPro: IPR013595 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This entry represents a C-terminal domain associated with putative hydrolases and bacterial peptidases that belong to MEROPS peptidase family S33 (clan SC). They are related to a tripeptidyl aminopeptidase from Streptomyces lividans (Q54410 from SWISSPROT). A member of this family (Q6E3K7 from SWISSPROT) is thought to be involved in the C-terminal processing of propionicin F, a bacteriocidin characterised from Propionibacterium freudenreichii []. ; GO: 0008233 peptidase activity
Probab=95.63 E-value=0.024 Score=49.86 Aligned_cols=60 Identities=27% Similarity=0.277 Sum_probs=47.2
Q ss_pred CCcEEEEEeCCCCCCCCchHHHHHHHHHHHhCCCcEEEEEeCCCCccCCCcccHHHHHHHHHHHHHH
Q 002209 830 KKPILLVHGEEDNNSGTLTMQSDRFFNALKGHGALCRLVILPFESHGYAARESIMHVLWETDRWLQK 896 (953)
Q Consensus 830 ~~P~Li~~G~~D~~v~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~H~~~~~~~~~~~~~~i~~fl~~ 896 (953)
..|+|+++++.|..+| ++.++++.+.+... +++.+++.||+... ....-+.+.+.+||..
T Consensus 34 ~~piL~l~~~~Dp~TP--~~~a~~~~~~l~~s----~lvt~~g~gHg~~~-~~s~C~~~~v~~yl~~ 93 (103)
T PF08386_consen 34 APPILVLGGTHDPVTP--YEGARAMAARLPGS----RLVTVDGAGHGVYA-GGSPCVDKAVDDYLLD 93 (103)
T ss_pred CCCEEEEecCcCCCCc--HHHHHHHHHHCCCc----eEEEEeccCcceec-CCChHHHHHHHHHHHc
Confidence 4899999999999988 99999998888753 89999999999753 3334555566666653
No 430
>KOG2041 consensus WD40 repeat protein [General function prediction only]
Probab=95.52 E-value=1.7 Score=49.47 Aligned_cols=61 Identities=16% Similarity=0.335 Sum_probs=34.9
Q ss_pred CcccceEeccCCCeEEEEEeeccccCCCCcceEEEEECCCCc-eeecccCCCccccccccceEEecCCeEEEEE
Q 002209 189 AKLNFVTWSQDGKHLAFSIRIDAEDSSSSKLRVWVADVDTGK-ARPLFQSPDIYLNAIFDNFVWVNNSTLLVCT 261 (953)
Q Consensus 189 ~~~~~~~wSPDG~~laf~~~~~~~~~~~~~~~l~~~d~~~g~-~~~lt~~~~~~~~~~~~~~~wspDg~~l~~~ 261 (953)
..+..+.|.-+.+.|-. + +.+| -|.+|-+-.|. ....+..-+ +..+.+..|..||+.|.+.
T Consensus 72 ~sV~vvTWNe~~QKLTt-S------Dt~G--lIiVWmlykgsW~EEMiNnRn---KSvV~SmsWn~dG~kIcIv 133 (1189)
T KOG2041|consen 72 ASVMVVTWNENNQKLTT-S------DTSG--LIIVWMLYKGSWCEEMINNRN---KSVVVSMSWNLDGTKICIV 133 (1189)
T ss_pred ceEEEEEeccccccccc-c------CCCc--eEEEEeeecccHHHHHhhCcC---ccEEEEEEEcCCCcEEEEE
Confidence 36778889866665543 2 2333 33333333333 333433222 2236789999999998876
No 431
>PF11187 DUF2974: Protein of unknown function (DUF2974); InterPro: IPR024499 This family of proteins has no known function.
Probab=95.51 E-value=0.019 Score=58.26 Aligned_cols=54 Identities=20% Similarity=0.191 Sum_probs=37.5
Q ss_pred HHHHHHHHHHHHHcCCCCCCcEEEEEeChHHHHHHHHHHhCC----CcccEEEEcccC
Q 002209 740 VACAEAAVEEVVRRGVAHPSKIAVGGHSYGAFMTANLLAHAP----HLFCCGIARSGA 793 (953)
Q Consensus 740 ~~D~~~~~~~l~~~~~~d~~~i~l~G~S~GG~~a~~~a~~~p----~~~~a~v~~~~~ 793 (953)
+.....|++|+.+.-.-.+.+|.+.|||.||++|.++++..+ +++..+.+..|+
T Consensus 65 ~~~q~~A~~yl~~~~~~~~~~i~v~GHSkGGnLA~yaa~~~~~~~~~rI~~vy~fDgP 122 (224)
T PF11187_consen 65 TPQQKSALAYLKKIAKKYPGKIYVTGHSKGGNLAQYAAANCDDEIQDRISKVYSFDGP 122 (224)
T ss_pred CHHHHHHHHHHHHHHHhCCCCEEEEEechhhHHHHHHHHHccHHHhhheeEEEEeeCC
Confidence 344456677776542112346999999999999999998843 467777766653
No 432
>COG3490 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=95.48 E-value=1.8 Score=44.11 Aligned_cols=166 Identities=14% Similarity=0.169 Sum_probs=93.4
Q ss_pred ecccccCCeeeccCCce-EEEEEecccCceEEEEEcCCCCCCCcEEeecCCCccccCCCCCCCeEeccCCCEEEEEeeec
Q 002209 453 KLDLRYGGISWCDDSLA-LVYESWYKTRRTRTWVISPGSKDVAPRILFDRSSEDVYSDPGSPMMRRTSTGTYVIAKIKKE 531 (953)
Q Consensus 453 ~~~~~~~~~~~SpDg~~-l~~~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~SpDG~~l~~~~~~~ 531 (953)
....+.-.++++|-..+ ++|+...+ . -.+++|.++. .++..+........|+. -.|||||++|+...++.
T Consensus 65 ~lpaR~Hgi~~~p~~~ravafARrPG-t--f~~vfD~~~~-~~pv~~~s~~~RHfyGH-----Gvfs~dG~~LYATEndf 135 (366)
T COG3490 65 ALPARGHGIAFHPALPRAVAFARRPG-T--FAMVFDPNGA-QEPVTLVSQEGRHFYGH-----GVFSPDGRLLYATENDF 135 (366)
T ss_pred ecccccCCeecCCCCcceEEEEecCC-c--eEEEECCCCC-cCcEEEecccCceeecc-----cccCCCCcEEEeecCCC
Confidence 33444556889998655 66664333 2 5678888876 46666665555555653 45999999999887654
Q ss_pred cCCCcEEEEecCCCCCCCCCCeEEEEECCCCceEEEeccCcccceeeeEeeccCCccccccccCCEEEEEEecC------
Q 002209 532 NDEGTYILLNGNGATPEGNIPFLDLFDINTGSKERIWESDKEKYYETTVALMSDQTEGDLYLNQLKILTSKESK------ 605 (953)
Q Consensus 532 ~~~~~~~~~~~~~~~~~~~~~~L~~~d~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~------ 605 (953)
+ .++..|-+||... ...++-+-+. .. -.-++..+.+||+++++.-...
T Consensus 136 d----------------~~rGViGvYd~r~-~fqrvgE~~t--------~G-iGpHev~lm~DGrtlvvanGGIethpdf 189 (366)
T COG3490 136 D----------------PNRGVIGVYDARE-GFQRVGEFST--------HG-IGPHEVTLMADGRTLVVANGGIETHPDF 189 (366)
T ss_pred C----------------CCCceEEEEeccc-ccceeccccc--------CC-cCcceeEEecCCcEEEEeCCceeccccc
Confidence 2 2344577788753 2233211110 00 0112345777888777653321
Q ss_pred --------CCCceEEEEECCCCCeeEEecCCCCCC-CcCCCceEEEEEEcCCCcEEEEEEEc
Q 002209 606 --------TENTQYYIQSWPDKKSCQITDFPHPYP-QLASLQKELIKYQRKDGVQLSATLYL 658 (953)
Q Consensus 606 --------~~p~~l~~~~~~~g~~~~Lt~~~~~~~-~~~~~~~~~~~~~~~dg~~~~~~l~~ 658 (953)
.+.+.+.+++..+|+... + +.++ ....+....+.+. .||..+.+.-|.
T Consensus 190 gR~~lNldsMePSlvlld~atG~lie--k--h~Lp~~l~~lSiRHld~g-~dgtvwfgcQy~ 246 (366)
T COG3490 190 GRTELNLDSMEPSLVLLDAATGNLIE--K--HTLPASLRQLSIRHLDIG-RDGTVWFGCQYR 246 (366)
T ss_pred CccccchhhcCccEEEEeccccchhh--h--ccCchhhhhcceeeeeeC-CCCcEEEEEEee
Confidence 123456666656664322 1 1233 2334445555554 688888888776
No 433
>KOG4389 consensus Acetylcholinesterase/Butyrylcholinesterase [Signal transduction mechanisms]
Probab=95.47 E-value=0.021 Score=61.99 Aligned_cols=125 Identities=26% Similarity=0.300 Sum_probs=79.3
Q ss_pred EEEEEEcCCCCCCCCCCCccEEEEeCCCCCcCcCCCCcccCCCCCCCCccchHHHHHHHc-CcEEEEcCCC-CCCC---C
Q 002209 652 LSATLYLPPGYDPSKDGPLPCLFWSYPGEFKSKDAAGQVRGSPNEFPRIGSTSVLLWLAR-GFAILGGPTT-PIIG---E 726 (953)
Q Consensus 652 ~~~~l~~P~~~~~~~~~~~P~vv~~hGg~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~-G~~V~~~~~~-~~~G---~ 726 (953)
++..+|.|. .++.+ .-|+|+++||.+.++.++-.+-.| ..|++. ..+|+..+|+ |..| .
T Consensus 121 LYlNVW~P~-~~p~n---~tVlVWiyGGGF~sGt~SLdvYdG------------k~la~~envIvVs~NYRvG~FGFL~l 184 (601)
T KOG4389|consen 121 LYLNVWAPA-ADPYN---LTVLVWIYGGGFYSGTPSLDVYDG------------KFLAAVENVIVVSMNYRVGAFGFLYL 184 (601)
T ss_pred eEEEEeccC-CCCCC---ceEEEEEEcCccccCCcceeeecc------------ceeeeeccEEEEEeeeeeccceEEec
Confidence 566777784 23333 459999999977776655444432 234544 4555555553 2223 2
Q ss_pred -CChhhhhhhHHHHHHHHHHHHHHHHHc---CCCCCCcEEEEEeChHHHHHHHHHHhCC--CcccEEEEcccCCC
Q 002209 727 -GDEEANDRFVEQLVACAEAAVEEVVRR---GVAHPSKIAVGGHSYGAFMTANLLAHAP--HLFCCGIARSGAYN 795 (953)
Q Consensus 727 -G~~~~~~~~~~~~~~D~~~~~~~l~~~---~~~d~~~i~l~G~S~GG~~a~~~a~~~p--~~~~a~v~~~~~~d 795 (953)
|..+.+. ....-|..-|+.|+.++ -.-|+++|.|+|.|+|+.-+..=+...+ .+|+-+|+.+|..+
T Consensus 185 ~~~~eaPG---NmGl~DQqLAl~WV~~Ni~aFGGnp~~vTLFGESAGaASv~aHLlsP~S~glF~raIlQSGS~~ 256 (601)
T KOG4389|consen 185 PGHPEAPG---NMGLLDQQLALQWVQENIAAFGGNPSRVTLFGESAGAASVVAHLLSPGSRGLFHRAILQSGSLN 256 (601)
T ss_pred CCCCCCCC---ccchHHHHHHHHHHHHhHHHhCCCcceEEEeccccchhhhhheecCCCchhhHHHHHhhcCCCC
Confidence 3333333 34567888899999876 2358999999999999976643332221 36888898888654
No 434
>KOG3967 consensus Uncharacterized conserved protein [Function unknown]
Probab=95.34 E-value=0.094 Score=50.49 Aligned_cols=76 Identities=18% Similarity=0.256 Sum_probs=46.3
Q ss_pred HHHHHHcCcEEEEcCCCCCCCCCCh-hhhhhhHHHHHHHHHHHHHHHHHcCCCCCCcEEEEEeChHHHHHHHHHHhCCC
Q 002209 705 VLLWLARGFAILGGPTTPIIGEGDE-EANDRFVEQLVACAEAAVEEVVRRGVAHPSKIAVGGHSYGAFMTANLLAHAPH 782 (953)
Q Consensus 705 ~~~la~~G~~V~~~~~~~~~G~G~~-~~~~~~~~~~~~D~~~~~~~l~~~~~~d~~~i~l~G~S~GG~~a~~~a~~~p~ 782 (953)
...-.+.||.|+..+....+-+-.+ ..+..+....++.+.-+..+++.. ..++.++++-||+||.+++.++.+.|+
T Consensus 137 i~rAv~~Gygviv~N~N~~~kfye~k~np~kyirt~veh~~yvw~~~v~p--a~~~sv~vvahsyGG~~t~~l~~~f~~ 213 (297)
T KOG3967|consen 137 IKRAVAEGYGVIVLNPNRERKFYEKKRNPQKYIRTPVEHAKYVWKNIVLP--AKAESVFVVAHSYGGSLTLDLVERFPD 213 (297)
T ss_pred HHHHHHcCCcEEEeCCchhhhhhhcccCcchhccchHHHHHHHHHHHhcc--cCcceEEEEEeccCChhHHHHHHhcCC
Confidence 3444578999887443211111111 112233344455555555555443 346789999999999999999999875
No 435
>KOG0267 consensus Microtubule severing protein katanin p80 subunit B (contains WD40 repeats) [Cell cycle control, cell division, chromosome partitioning]
Probab=95.21 E-value=0.063 Score=60.75 Aligned_cols=81 Identities=12% Similarity=0.133 Sum_probs=50.0
Q ss_pred eceEEEEccCCCCCCceeeeecCCCCCcccceEeccCCCeEEEEEeeccccCCCCcceEEEEECCCCceeecccCCCccc
Q 002209 163 TGIGIHQLFPDGKLGQEIEIQGFPDGAKLNFVTWSQDGKHLAFSIRIDAEDSSSSKLRVWVADVDTGKARPLFQSPDIYL 242 (953)
Q Consensus 163 ~~i~i~~~~~~g~~~~~~~l~~~~~~~~~~~~~wSPDG~~laf~~~~~~~~~~~~~~~l~~~d~~~g~~~~lt~~~~~~~ 242 (953)
+.|.+||+.. + ...+.|+++. ..+..+.|+|=|.+.|- +.-..++-+||..-..+.........
T Consensus 92 gtiK~wDlee-A--k~vrtLtgh~--~~~~sv~f~P~~~~~a~---------gStdtd~~iwD~Rk~Gc~~~~~s~~~-- 155 (825)
T KOG0267|consen 92 GTIKVWDLEE-A--KIVRTLTGHL--LNITSVDFHPYGEFFAS---------GSTDTDLKIWDIRKKGCSHTYKSHTR-- 155 (825)
T ss_pred Cceeeeehhh-h--hhhhhhhccc--cCcceeeeccceEEecc---------ccccccceehhhhccCceeeecCCcc--
Confidence 4689999953 1 2234454433 26777889998876532 33456777777664334433332221
Q ss_pred cccccceEEecCCeEEEEE
Q 002209 243 NAIFDNFVWVNNSTLLVCT 261 (953)
Q Consensus 243 ~~~~~~~~wspDg~~l~~~ 261 (953)
.+..+.++|||++++..
T Consensus 156 --vv~~l~lsP~Gr~v~~g 172 (825)
T KOG0267|consen 156 --VVDVLRLSPDGRWVASG 172 (825)
T ss_pred --eeEEEeecCCCceeecc
Confidence 26688999999999854
No 436
>KOG0300 consensus WD40 repeat-containing protein [Function unknown]
Probab=95.13 E-value=1.1 Score=45.77 Aligned_cols=39 Identities=21% Similarity=0.247 Sum_probs=28.3
Q ss_pred CcccccccCCCCcEEEEEEecCCccccccCCCCCcceEEEeccCceEEE-ecc
Q 002209 332 AVYTSLDPSPDEKYILISSIHRPYSFIVPCGRFPRQVGVWTTDGIFVRE-LCD 383 (953)
Q Consensus 332 ~~~~~~~~SpDG~~l~~~~~~~~~~~~~~~~~~~~~i~~~d~~g~~~~~-l~~ 383 (953)
+.+....|-.-|+.++..+-++ .--+||++++++.. |+.
T Consensus 273 ~vV~a~dWL~gg~Q~vTaSWDR-------------TAnlwDVEtge~v~~LtG 312 (481)
T KOG0300|consen 273 AVVSACDWLAGGQQMVTASWDR-------------TANLWDVETGEVVNILTG 312 (481)
T ss_pred cceEehhhhcCcceeeeeeccc-------------cceeeeeccCceeccccC
Confidence 5566678888999998887443 66689999877654 443
No 437
>PRK10252 entF enterobactin synthase subunit F; Provisional
Probab=95.08 E-value=0.18 Score=66.90 Aligned_cols=75 Identities=11% Similarity=0.018 Sum_probs=49.3
Q ss_pred HcCcEEEEcCCCCCCCCCChhhhhhhHHHHHHHHHHHHHHHHHcCCCCCCcEEEEEeChHHHHHHHHHHh---CCCcccE
Q 002209 710 ARGFAILGGPTTPIIGEGDEEANDRFVEQLVACAEAAVEEVVRRGVAHPSKIAVGGHSYGAFMTANLLAH---APHLFCC 786 (953)
Q Consensus 710 ~~G~~V~~~~~~~~~G~G~~~~~~~~~~~~~~D~~~~~~~l~~~~~~d~~~i~l~G~S~GG~~a~~~a~~---~p~~~~a 786 (953)
..++.|+.++. .|++..............++.+.++.+. ...++.++||||||.++..++.+ .++.+..
T Consensus 1092 ~~~~~v~~~~~---~g~~~~~~~~~~l~~la~~~~~~i~~~~-----~~~p~~l~G~S~Gg~vA~e~A~~l~~~~~~v~~ 1163 (1296)
T PRK10252 1092 DPQWSIYGIQS---PRPDGPMQTATSLDEVCEAHLATLLEQQ-----PHGPYHLLGYSLGGTLAQGIAARLRARGEEVAF 1163 (1296)
T ss_pred CCCCcEEEEEC---CCCCCCCCCCCCHHHHHHHHHHHHHhhC-----CCCCEEEEEechhhHHHHHHHHHHHHcCCceeE
Confidence 45688888443 4554432223345666666666555431 12479999999999999999885 4677777
Q ss_pred EEEccc
Q 002209 787 GIARSG 792 (953)
Q Consensus 787 ~v~~~~ 792 (953)
++++.+
T Consensus 1164 l~l~~~ 1169 (1296)
T PRK10252 1164 LGLLDT 1169 (1296)
T ss_pred EEEecC
Confidence 777654
No 438
>PF13360 PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A 3Q54_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A ....
Probab=95.07 E-value=4.6 Score=41.58 Aligned_cols=52 Identities=15% Similarity=0.112 Sum_probs=30.2
Q ss_pred ceEEEEEc-CCceeEe-CC---C--CcccccccCCCCcEEEEEEecCCccccccCCCCCcceEEEeccCceE
Q 002209 314 TQLVLVSL-DGTVKEI-GP---P--AVYTSLDPSPDEKYILISSIHRPYSFIVPCGRFPRQVGVWTTDGIFV 378 (953)
Q Consensus 314 ~~l~~~~~-~g~~~~l-~~---~--~~~~~~~~SpDG~~l~~~~~~~~~~~~~~~~~~~~~i~~~d~~g~~~ 378 (953)
..|+.+|. +|+...- .. + ..........+|+.+++... .+.|+.+|+.++..
T Consensus 86 ~~l~~~d~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------------~g~l~~~d~~tG~~ 144 (238)
T PF13360_consen 86 GSLYALDAKTGKVLWSIYLTSSPPAGVRSSSSPAVDGDRLYVGTS-------------SGKLVALDPKTGKL 144 (238)
T ss_dssp SEEEEEETTTSCEEEEEEE-SSCTCSTB--SEEEEETTEEEEEET-------------CSEEEEEETTTTEE
T ss_pred eeeEecccCCcceeeeeccccccccccccccCceEecCEEEEEec-------------cCcEEEEecCCCcE
Confidence 47888997 8865443 11 1 12223334445777777662 23889999886554
No 439
>COG3204 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=95.06 E-value=3.6 Score=42.48 Aligned_cols=64 Identities=13% Similarity=0.169 Sum_probs=42.9
Q ss_pred eeeecCCCCCcccceEeccCCCeEEEEEeeccccCCCCcceEEEEECCCCceeec--ccCCCccccccccceEEecCCeE
Q 002209 180 IEIQGFPDGAKLNFVTWSQDGKHLAFSIRIDAEDSSSSKLRVWVADVDTGKARPL--FQSPDIYLNAIFDNFVWVNNSTL 257 (953)
Q Consensus 180 ~~l~~~~~~~~~~~~~wSPDG~~laf~~~~~~~~~~~~~~~l~~~d~~~g~~~~l--t~~~~~~~~~~~~~~~wspDg~~ 257 (953)
+++.+.+ ..++...|+||.+.|..+.+ ....|.-++.+|.-.+.+ +...+ .+.+.|.-+|+.
T Consensus 79 kpi~g~~--~nvS~LTynp~~rtLFav~n--------~p~~iVElt~~GdlirtiPL~g~~D------pE~Ieyig~n~f 142 (316)
T COG3204 79 KPILGET--ANVSSLTYNPDTRTLFAVTN--------KPAAIVELTKEGDLIRTIPLTGFSD------PETIEYIGGNQF 142 (316)
T ss_pred ccccccc--ccccceeeCCCcceEEEecC--------CCceEEEEecCCceEEEecccccCC------hhHeEEecCCEE
Confidence 3354444 35899999999998876543 456787788777655544 33222 557889988876
Q ss_pred EE
Q 002209 258 LV 259 (953)
Q Consensus 258 l~ 259 (953)
.+
T Consensus 143 vi 144 (316)
T COG3204 143 VI 144 (316)
T ss_pred EE
Confidence 66
No 440
>KOG4532 consensus WD40-like repeat containing protein [General function prediction only]
Probab=95.02 E-value=0.97 Score=45.46 Aligned_cols=106 Identities=11% Similarity=0.054 Sum_probs=56.5
Q ss_pred CCCceecCCCCEEEEEecCCCCCccccccccceeceEEecCCCCCCcceeeeeceEEEEccCCCCCCceeeeecCCCCCc
Q 002209 111 LPALSFSPQRDKILFLKRRALPPLEELARPEEKLAGLRIDGKCNTRSRMSFYTGIGIHQLFPDGKLGQEIEIQGFPDGAK 190 (953)
Q Consensus 111 ~~~~~~SPDG~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~i~~~~~~g~~~~~~~l~~~~~~~~ 190 (953)
....++|||+++++.+.+- .++..+.+..++.-.....+...++ .
T Consensus 161 ~ns~~~snd~~~~~~Vgds---------------------------------~~Vf~y~id~~sey~~~~~~a~t~D--~ 205 (344)
T KOG4532|consen 161 QNSLHYSNDPSWGSSVGDS---------------------------------RRVFRYAIDDESEYIENIYEAPTSD--H 205 (344)
T ss_pred eeeeEEcCCCceEEEecCC---------------------------------CcceEEEeCCccceeeeeEecccCC--C
Confidence 4566778888877776552 3455666643332222222222222 3
Q ss_pred ccceEeccCCCeEEEEEeeccccCCCCcceEEEEECCCC-ce-eecccCCCccccccccceEEecCC--eEEEEE
Q 002209 191 LNFVTWSQDGKHLAFSIRIDAEDSSSSKLRVWVADVDTG-KA-RPLFQSPDIYLNAIFDNFVWVNNS--TLLVCT 261 (953)
Q Consensus 191 ~~~~~wSPDG~~laf~~~~~~~~~~~~~~~l~~~d~~~g-~~-~~lt~~~~~~~~~~~~~~~wspDg--~~l~~~ 261 (953)
-...+||......|...+ ++...|| |+..- .+ ...+. .....|+.+..+.||+-| ..|+|+
T Consensus 206 gF~~S~s~~~~~FAv~~Q-------dg~~~I~--DVR~~~tpm~~~ss-trp~hnGa~R~c~Fsl~g~lDLLf~s 270 (344)
T KOG4532|consen 206 GFYNSFSENDLQFAVVFQ-------DGTCAIY--DVRNMATPMAEISS-TRPHHNGAFRVCRFSLYGLLDLLFIS 270 (344)
T ss_pred ceeeeeccCcceEEEEec-------CCcEEEE--Eecccccchhhhcc-cCCCCCCceEEEEecCCCcceEEEEe
Confidence 466789987777776553 3344444 44432 22 11111 112245568899999877 356665
No 441
>KOG4547 consensus WD40 repeat-containing protein [General function prediction only]
Probab=94.99 E-value=1.9 Score=48.22 Aligned_cols=103 Identities=18% Similarity=0.142 Sum_probs=64.2
Q ss_pred CCCcceEEEEECCCCceee-cccCCCccccccccceEEecCCeEEEEEecCCCCCCCCCCCCCCCCceeecCCCccccch
Q 002209 215 SSSKLRVWVADVDTGKARP-LFQSPDIYLNAIFDNFVWVNNSTLLVCTIPLLRGDPPKKPLVPLGPKMQSNEKRDIIQVR 293 (953)
Q Consensus 215 ~~~~~~l~~~d~~~g~~~~-lt~~~~~~~~~~~~~~~wspDg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 293 (953)
+.+...+|++++.+|+... ++... +-+.+....|+.+-..|+...
T Consensus 76 gt~~g~v~~ys~~~g~it~~~st~~---h~~~v~~~~~~~~~~ciyS~~------------------------------- 121 (541)
T KOG4547|consen 76 GTPQGSVLLYSVAGGEITAKLSTDK---HYGNVNEILDAQRLGCIYSVG------------------------------- 121 (541)
T ss_pred ecCCccEEEEEecCCeEEEEEecCC---CCCcceeeecccccCceEecC-------------------------------
Confidence 3357789999998887643 33211 111255666666555555330
Q ss_pred hhhhhcCCcchhhhhhhhccceEEEEEc-CCceeEeCCC--CcccccccCCCCcEEEEEEecCCccccccCCCCCcceEE
Q 002209 294 TFQDLLKDEYDEDLFDYYATTQLVLVSL-DGTVKEIGPP--AVYTSLDPSPDEKYILISSIHRPYSFIVPCGRFPRQVGV 370 (953)
Q Consensus 294 ~~~~~~~~~~d~~~~~~~~~~~l~~~~~-~g~~~~l~~~--~~~~~~~~SpDG~~l~~~~~~~~~~~~~~~~~~~~~i~~ 370 (953)
+..++..++. ++...++... ..+.+.++||||+.++..+ .+|-+
T Consensus 122 ------------------ad~~v~~~~~~~~~~~~~~~~~~~~~~sl~is~D~~~l~~as---------------~~ik~ 168 (541)
T KOG4547|consen 122 ------------------ADLKVVYILEKEKVIIRIWKEQKPLVSSLCISPDGKILLTAS---------------RQIKV 168 (541)
T ss_pred ------------------CceeEEEEecccceeeeeeccCCCccceEEEcCCCCEEEecc---------------ceEEE
Confidence 2234445555 6655555443 5678999999999888776 28999
Q ss_pred EeccCceEEE-eccC
Q 002209 371 WTTDGIFVRE-LCDL 384 (953)
Q Consensus 371 ~d~~g~~~~~-l~~~ 384 (953)
||++.+++.. .+.+
T Consensus 169 ~~~~~kevv~~ftgh 183 (541)
T KOG4547|consen 169 LDIETKEVVITFTGH 183 (541)
T ss_pred EEccCceEEEEecCC
Confidence 9999766543 4443
No 442
>COG3204 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=94.98 E-value=3 Score=43.02 Aligned_cols=117 Identities=12% Similarity=0.167 Sum_probs=67.9
Q ss_pred CcccccccCCCCcEEEEEEecCCccccccCCCCCcceEEEeccCceEEEeccCCCcccCCccccccccCccceeeccCCC
Q 002209 332 AVYTSLDPSPDEKYILISSIHRPYSFIVPCGRFPRQVGVWTTDGIFVRELCDLPLAEDIPIAFNSVRKGMRSINWRSDKP 411 (953)
Q Consensus 332 ~~~~~~~~SpDG~~l~~~~~~~~~~~~~~~~~~~~~i~~~d~~g~~~~~l~~~~~~~~~p~~~~~~~~~~~~~~wspDg~ 411 (953)
..+++..|+||.+.|+.+.+.. ..|.-.+.+|.-++.+.-.... ....+.|.-+|+
T Consensus 86 ~nvS~LTynp~~rtLFav~n~p------------~~iVElt~~GdlirtiPL~g~~------------DpE~Ieyig~n~ 141 (316)
T COG3204 86 ANVSSLTYNPDTRTLFAVTNKP------------AAIVELTKEGDLIRTIPLTGFS------------DPETIEYIGGNQ 141 (316)
T ss_pred ccccceeeCCCcceEEEecCCC------------ceEEEEecCCceEEEecccccC------------ChhHeEEecCCE
Confidence 5689999999999988776432 2555566777777765543211 113456666664
Q ss_pred CceEEEEeccCCCcccccccCCeEEEEecCCCCCCC------ceEEeec---ccccCCeeeccCCceEEEEEecccCceE
Q 002209 412 STLYWAETQDGGDAKVEVTPRDIIYTQQAEPVQGEG------PEILHKL---DLRYGGISWCDDSLALVYESWYKTRRTR 482 (953)
Q Consensus 412 ~i~~~~~~~~~~~~~~~~~~~~~l~~~d~~~~~g~~------~~~l~~~---~~~~~~~~~SpDg~~l~~~~~~~~~~~~ 482 (953)
..+ ++. ....++.+.+++ ++.. ...|... .....+++|+|..++|+++.+++.. .
T Consensus 142 fvi--~dE-----------R~~~l~~~~vd~-~t~~~~~~~~~i~L~~~~k~N~GfEGlA~d~~~~~l~~aKEr~P~--~ 205 (316)
T COG3204 142 FVI--VDE-----------RDRALYLFTVDA-DTTVISAKVQKIPLGTTNKKNKGFEGLAWDPVDHRLFVAKERNPI--G 205 (316)
T ss_pred EEE--Eeh-----------hcceEEEEEEcC-CccEEeccceEEeccccCCCCcCceeeecCCCCceEEEEEccCCc--E
Confidence 221 111 123455544411 2111 1112111 2334679999999999998877765 7
Q ss_pred EEEEcC
Q 002209 483 TWVISP 488 (953)
Q Consensus 483 l~~~d~ 488 (953)
||.++.
T Consensus 206 I~~~~~ 211 (316)
T COG3204 206 IFEVTQ 211 (316)
T ss_pred EEEEec
Confidence 888873
No 443
>KOG0269 consensus WD40 repeat-containing protein [Function unknown]
Probab=94.90 E-value=0.69 Score=53.22 Aligned_cols=99 Identities=9% Similarity=0.077 Sum_probs=60.8
Q ss_pred CcccccccCCCCcEEEEEEecCCccccccCCCCCcceEEEeccC--ceEEEeccCCCcccCCccccccccCccceeeccC
Q 002209 332 AVYTSLDPSPDEKYILISSIHRPYSFIVPCGRFPRQVGVWTTDG--IFVRELCDLPLAEDIPIAFNSVRKGMRSINWRSD 409 (953)
Q Consensus 332 ~~~~~~~~SpDG~~l~~~~~~~~~~~~~~~~~~~~~i~~~d~~g--~~~~~l~~~~~~~~~p~~~~~~~~~~~~~~wspD 409 (953)
..++.+.|||--....++..+ .+.+.+||+.- .-.++++.+. +-+.-+.|+|+
T Consensus 177 ESiRDV~fsp~~~~~F~s~~d------------sG~lqlWDlRqp~r~~~k~~AH~-------------GpV~c~nwhPn 231 (839)
T KOG0269|consen 177 ESIRDVKFSPGYGNKFASIHD------------SGYLQLWDLRQPDRCEKKLTAHN-------------GPVLCLNWHPN 231 (839)
T ss_pred hhhhceeeccCCCceEEEecC------------CceEEEeeccCchhHHHHhhccc-------------CceEEEeecCC
Confidence 778899999954444444322 34899999973 2233444432 22345889998
Q ss_pred CCCceEEEEeccCCCcccccccCCeEEEEecCCCCCCCceE-E-eecccccCCeeeccCCceEE
Q 002209 410 KPSTLYWAETQDGGDAKVEVTPRDIIYTQQAEPVQGEGPEI-L-HKLDLRYGGISWCDDSLALV 471 (953)
Q Consensus 410 g~~i~~~~~~~~~~~~~~~~~~~~~l~~~d~~~~~g~~~~~-l-~~~~~~~~~~~~SpDg~~l~ 471 (953)
+..||-. +.+..+-+|+. ++++... + ......+..+.|-|+-.+.+
T Consensus 232 r~~lATG-------------GRDK~vkiWd~---t~~~~~~~~tInTiapv~rVkWRP~~~~hL 279 (839)
T KOG0269|consen 232 REWLATG-------------GRDKMVKIWDM---TDSRAKPKHTINTIAPVGRVKWRPARSYHL 279 (839)
T ss_pred Cceeeec-------------CCCccEEEEec---cCCCccceeEEeecceeeeeeeccCccchh
Confidence 8766544 33446778885 4443332 2 34455677899999977643
No 444
>COG3946 VirJ Type IV secretory pathway, VirJ component [Intracellular trafficking and secretion]
Probab=94.85 E-value=0.12 Score=55.28 Aligned_cols=172 Identities=16% Similarity=0.133 Sum_probs=92.7
Q ss_pred CCCccchHHHHHHHcCcEEEEcCCCCCCCCCChhhhhhhHHHHHHHHHHHHHHHHHcCCCCCCcEEEEEeChHHHHHHHH
Q 002209 697 FPRIGSTSVLLWLARGFAILGGPTTPIIGEGDEEANDRFVEQLVACAEAAVEEVVRRGVAHPSKIAVGGHSYGAFMTANL 776 (953)
Q Consensus 697 ~~~~~~~~~~~la~~G~~V~~~~~~~~~G~G~~~~~~~~~~~~~~D~~~~~~~l~~~~~~d~~~i~l~G~S~GG~~a~~~ 776 (953)
|+.........|.++|+-|+..|..-+ +.....-+....|+.+.+++-..+- ...++.++|+|+|+=+--.+
T Consensus 272 Wr~lDk~v~~~l~~~gvpVvGvdsLRY------fW~~rtPe~~a~Dl~r~i~~y~~~w--~~~~~~liGySfGADvlP~~ 343 (456)
T COG3946 272 WRDLDKEVAEALQKQGVPVVGVDSLRY------FWSERTPEQIAADLSRLIRFYARRW--GAKRVLLIGYSFGADVLPFA 343 (456)
T ss_pred hhhhhHHHHHHHHHCCCceeeeehhhh------hhccCCHHHHHHHHHHHHHHHHHhh--CcceEEEEeecccchhhHHH
Confidence 444555667788999999998554322 2223344677889999988887653 24699999999999877666
Q ss_pred HHhCCCcccEEEEcccCCCCCC-CCcCcccccchhhhhHHHHHhcCcccccCCCC-CcEEEEEeC--CCCCCCCchHHHH
Q 002209 777 LAHAPHLFCCGIARSGAYNRTL-TPFGFQNEDRTLWEATSTYVEMSPFMSANKLK-KPILLVHGE--EDNNSGTLTMQSD 852 (953)
Q Consensus 777 a~~~p~~~~a~v~~~~~~d~~~-~~~~~~~~~~~~~~~~~~~~~~sp~~~~~~i~-~P~Li~~G~--~D~~v~~~~~~~~ 852 (953)
-.+.|...+..|-......... ..+.+.-+ -|-....-........+.+|. .-+..|.|. +|..|| -
T Consensus 344 ~n~L~~~~r~~v~~~~ll~l~~~~~fe~~v~---gWlg~~~~g~~~~~~~~~~l~~~~v~CiYG~~e~d~~Cp--~---- 414 (456)
T COG3946 344 YNRLPPATRQRVRMVSLLGLGRTADFEISVE---GWLGMAGEGAGDVVPDIAKLPLARVQCIYGQEEKDTACP--S---- 414 (456)
T ss_pred HHhCCHHHHHHHHHHHHHhccccceEEEEEe---eeeccCCcCCCCcchhhhhCCcceeEEEecCccccccCC--c----
Confidence 6665543332222211111000 00100000 010000000012223334443 246667775 455555 3
Q ss_pred HHHHHHHhCCCcEEEEEeCCCCccCCCcccHHHHHHHHHHHHH
Q 002209 853 RFFNALKGHGALCRLVILPFESHGYAARESIMHVLWETDRWLQ 895 (953)
Q Consensus 853 ~~~~~l~~~g~~~~~~~~~~~~H~~~~~~~~~~~~~~i~~fl~ 895 (953)
++.++ ++.+.+|| ||.| .++.+.+.+.|++=+.
T Consensus 415 -----l~~~~--~~~v~lpG-gHHF--d~dy~~la~~il~~~~ 447 (456)
T COG3946 415 -----LKAKG--VDTVKLPG-GHHF--DGDYEKLAKAILQGMR 447 (456)
T ss_pred -----chhhc--ceeEecCC-Cccc--CccHHHHHHHHHHHHH
Confidence 22233 46777898 6766 3455666777776653
No 445
>PF06977 SdiA-regulated: SdiA-regulated; InterPro: IPR009722 This entry represents a conserved region approximately 100 residues long within a number of hypothetical bacterial proteins that may be regulated by SdiA, a member of the LuxR family of transcriptional regulators []. Some proteins contain the IPR001258 from INTERPRO repeat.; PDB: 3QQZ_A.
Probab=94.83 E-value=1.7 Score=44.85 Aligned_cols=123 Identities=13% Similarity=0.152 Sum_probs=66.2
Q ss_pred eEeCCC-CcccccccCCCCcEEEEEEecCCccccccCCCCCcceEEEeccCceEEEeccCCCcccCCccccccccCccce
Q 002209 326 KEIGPP-AVYTSLDPSPDEKYILISSIHRPYSFIVPCGRFPRQVGVWTTDGIFVRELCDLPLAEDIPIAFNSVRKGMRSI 404 (953)
Q Consensus 326 ~~l~~~-~~~~~~~~SpDG~~l~~~~~~~~~~~~~~~~~~~~~i~~~d~~g~~~~~l~~~~~~~~~p~~~~~~~~~~~~~ 404 (953)
+.|..- ..++.++|.||.+.|+.+.+. +..|+.++++|.-.+.+.-... .-...+
T Consensus 15 ~~l~g~~~e~SGLTy~pd~~tLfaV~d~------------~~~i~els~~G~vlr~i~l~g~------------~D~EgI 70 (248)
T PF06977_consen 15 KPLPGILDELSGLTYNPDTGTLFAVQDE------------PGEIYELSLDGKVLRRIPLDGF------------GDYEGI 70 (248)
T ss_dssp EE-TT--S-EEEEEEETTTTEEEEEETT------------TTEEEEEETT--EEEEEE-SS-------------SSEEEE
T ss_pred eECCCccCCccccEEcCCCCeEEEEECC------------CCEEEEEcCCCCEEEEEeCCCC------------CCceeE
Confidence 344443 568899999999998888743 2378888888776666553221 112356
Q ss_pred eeccCCCCceEEEEeccCCCcccccccCCeEEEEecCCCCCCCc-----eEEe-----ecccccCCeeeccCCceEEEEE
Q 002209 405 NWRSDKPSTLYWAETQDGGDAKVEVTPRDIIYTQQAEPVQGEGP-----EILH-----KLDLRYGGISWCDDSLALVYES 474 (953)
Q Consensus 405 ~wspDg~~i~~~~~~~~~~~~~~~~~~~~~l~~~d~~~~~g~~~-----~~l~-----~~~~~~~~~~~SpDg~~l~~~~ 474 (953)
++.-+|+ +...+ .....++.+++ +..+... +.+. .......+++|.+.+++|+.+.
T Consensus 71 ~y~g~~~--~vl~~-----------Er~~~L~~~~~-~~~~~~~~~~~~~~~~l~~~~~~N~G~EGla~D~~~~~L~v~k 136 (248)
T PF06977_consen 71 TYLGNGR--YVLSE-----------ERDQRLYIFTI-DDDTTSLDRADVQKISLGFPNKGNKGFEGLAYDPKTNRLFVAK 136 (248)
T ss_dssp EE-STTE--EEEEE-----------TTTTEEEEEEE-----TT--EEEEEEEE---S---SS--EEEEEETTTTEEEEEE
T ss_pred EEECCCE--EEEEE-----------cCCCcEEEEEE-eccccccchhhceEEecccccCCCcceEEEEEcCCCCEEEEEe
Confidence 6766563 22211 12346776665 1122211 1121 1223356799999999988876
Q ss_pred ecccCceEEEEEcC
Q 002209 475 WYKTRRTRTWVISP 488 (953)
Q Consensus 475 ~~~~~~~~l~~~d~ 488 (953)
+++.. .||.++.
T Consensus 137 E~~P~--~l~~~~~ 148 (248)
T PF06977_consen 137 ERKPK--RLYEVNG 148 (248)
T ss_dssp ESSSE--EEEEEES
T ss_pred CCCCh--hhEEEcc
Confidence 65543 7888876
No 446
>KOG2182 consensus Hydrolytic enzymes of the alpha/beta hydrolase fold [Posttranslational modification, protein turnover, chaperones; General function prediction only]
Probab=94.75 E-value=0.28 Score=54.07 Aligned_cols=131 Identities=15% Similarity=0.022 Sum_probs=83.5
Q ss_pred CCcEEEEEEEcCCCCCCCCCCCccEEEEeCC-CCCcCcCCCCcccCCCCCCCCccchHHHHHHHcCcEEEEcCCCCCCCC
Q 002209 648 DGVQLSATLYLPPGYDPSKDGPLPCLFWSYP-GEFKSKDAAGQVRGSPNEFPRIGSTSVLLWLARGFAILGGPTTPIIGE 726 (953)
Q Consensus 648 dg~~~~~~l~~P~~~~~~~~~~~P~vv~~hG-g~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~G~~V~~~~~~~~~G~ 726 (953)
.+...+=++|.+..+... .-|+.|++-| ||.. ..|-... +..+...-.+.|-.|+.... +=+
T Consensus 67 ~~~~~Qq~~y~n~~~~~~---~gPiFLmIGGEgp~~---------~~wv~~~--~~~~~~~AkkfgA~v~~lEH---RFY 129 (514)
T KOG2182|consen 67 NGKFFQQRFYNNNQWAKP---GGPIFLMIGGEGPES---------DKWVGNE--NLTWLQWAKKFGATVFQLEH---RFY 129 (514)
T ss_pred hhhhhhhheeeccccccC---CCceEEEEcCCCCCC---------CCccccC--cchHHHHHHHhCCeeEEeee---ecc
Confidence 344444456666554322 2688999877 3211 1111111 12233333457888888333 334
Q ss_pred CChhh-------h--hhhHHHHHHHHHHHHHHHHHcC-CCCCCcEEEEEeChHHHHHHHHHHhCCCcccEEEEcccCCC
Q 002209 727 GDEEA-------N--DRFVEQLVACAEAAVEEVVRRG-VAHPSKIAVGGHSYGAFMTANLLAHAPHLFCCGIARSGAYN 795 (953)
Q Consensus 727 G~~~~-------~--~~~~~~~~~D~~~~~~~l~~~~-~~d~~~i~l~G~S~GG~~a~~~a~~~p~~~~a~v~~~~~~d 795 (953)
|.+.. + .-...+.+.|+..+|+.+..+. .-+..+.+.+|.||-|.|++|+=..+|+++.++|+-++++.
T Consensus 130 G~S~P~~~~st~nlk~LSs~QALaDla~fI~~~n~k~n~~~~~~WitFGgSYsGsLsAW~R~~yPel~~GsvASSapv~ 208 (514)
T KOG2182|consen 130 GQSSPIGDLSTSNLKYLSSLQALADLAEFIKAMNAKFNFSDDSKWITFGGSYSGSLSAWFREKYPELTVGSVASSAPVL 208 (514)
T ss_pred ccCCCCCCCcccchhhhhHHHHHHHHHHHHHHHHhhcCCCCCCCeEEECCCchhHHHHHHHHhCchhheeeccccccee
Confidence 54421 1 1225678999999999997764 45556999999999999999999999999999998877643
No 447
>PF05990 DUF900: Alpha/beta hydrolase of unknown function (DUF900); InterPro: IPR010297 This domain is associated with proteins of unknown function, which are hydrolase-like.
Probab=94.72 E-value=0.14 Score=52.59 Aligned_cols=83 Identities=12% Similarity=0.075 Sum_probs=50.3
Q ss_pred HHHHHHHHHHHHHHcCCCCCCcEEEEEeChHHHHHHHHHHhC----C-----CcccEEEEcccCCCCCCCCcCcccccch
Q 002209 739 LVACAEAAVEEVVRRGVAHPSKIAVGGHSYGAFMTANLLAHA----P-----HLFCCGIARSGAYNRTLTPFGFQNEDRT 809 (953)
Q Consensus 739 ~~~D~~~~~~~l~~~~~~d~~~i~l~G~S~GG~~a~~~a~~~----p-----~~~~a~v~~~~~~d~~~~~~~~~~~~~~ 809 (953)
...++...++.|.+.. ...+|.|++||||+.+.+.++... + .+|.-+++.+|-.+..
T Consensus 75 s~~~l~~~L~~L~~~~--~~~~I~ilaHSMG~rv~~~aL~~l~~~~~~~~~~~~~~~viL~ApDid~d------------ 140 (233)
T PF05990_consen 75 SGPALARFLRDLARAP--GIKRIHILAHSMGNRVLLEALRQLASEGERPDVKARFDNVILAAPDIDND------------ 140 (233)
T ss_pred HHHHHHHHHHHHHhcc--CCceEEEEEeCchHHHHHHHHHHHHhcccchhhHhhhheEEEECCCCCHH------------
Confidence 3445555566665542 357999999999999998887542 1 2466777777644311
Q ss_pred hhhhHHHHHhcCcccccCCCCCcEEEEEeCCCCC
Q 002209 810 LWEATSTYVEMSPFMSANKLKKPILLVHGEEDNN 843 (953)
Q Consensus 810 ~~~~~~~~~~~sp~~~~~~i~~P~Li~~G~~D~~ 843 (953)
.+...- ..+.+...++.+.+..+|..
T Consensus 141 ------~f~~~~--~~~~~~~~~itvy~s~~D~A 166 (233)
T PF05990_consen 141 ------VFRSQL--PDLGSSARRITVYYSRNDRA 166 (233)
T ss_pred ------HHHHHH--HHHhhcCCCEEEEEcCCchH
Confidence 011000 02223347889999999965
No 448
>KOG2931 consensus Differentiation-related gene 1 protein (NDR1 protein), related proteins [Function unknown]
Probab=94.70 E-value=1.9 Score=44.47 Aligned_cols=131 Identities=13% Similarity=0.128 Sum_probs=81.0
Q ss_pred eEEEEEEcCCCcEEEEEEEcCCCCCCCCCCCccEEEEeCCCCCcCcCCCCcccCCCCCCCC-ccchHHHHHHHcCcEEEE
Q 002209 639 KELIKYQRKDGVQLSATLYLPPGYDPSKDGPLPCLFWSYPGEFKSKDAAGQVRGSPNEFPR-IGSTSVLLWLARGFAILG 717 (953)
Q Consensus 639 ~~~~~~~~~dg~~~~~~l~~P~~~~~~~~~~~P~vv~~hGg~~~~~~~~~~~~~~~~~~~~-~~~~~~~~la~~G~~V~~ 717 (953)
.++..+++..| .++..++--+ +++.|++|-.|.=..+.+ ..|.. +....+..++.+ |.|..
T Consensus 22 ~~e~~V~T~~G-~v~V~V~Gd~------~~~kpaiiTyhDlglN~~----------scFq~ff~~p~m~ei~~~-fcv~H 83 (326)
T KOG2931|consen 22 CQEHDVETAHG-VVHVTVYGDP------KGNKPAIITYHDLGLNHK----------SCFQGFFNFPDMAEILEH-FCVYH 83 (326)
T ss_pred ceeeeeccccc-cEEEEEecCC------CCCCceEEEecccccchH----------hHhHHhhcCHhHHHHHhh-eEEEe
Confidence 34555666565 5788887422 124677888887211111 01211 112334456666 88888
Q ss_pred cCCCCCCCCCChhhhh----hhHHHHHHHHHHHHHHHHHcCCCCCCcEEEEEeChHHHHHHHHHHhCCCcccEEEEcccC
Q 002209 718 GPTTPIIGEGDEEAND----RFVEQLVACAEAAVEEVVRRGVAHPSKIAVGGHSYGAFMTANLLAHAPHLFCCGIARSGA 793 (953)
Q Consensus 718 ~~~~~~~G~G~~~~~~----~~~~~~~~D~~~~~~~l~~~~~~d~~~i~l~G~S~GG~~a~~~a~~~p~~~~a~v~~~~~ 793 (953)
++..|. -.|-...+. ...+++.+++..+++++. -+-|.-+|--.|+++-...|..+|+++-+.|++.+.
T Consensus 84 V~~PGq-e~gAp~~p~~y~yPsmd~LAd~l~~VL~~f~------lk~vIg~GvGAGAyIL~rFAl~hp~rV~GLvLIn~~ 156 (326)
T KOG2931|consen 84 VDAPGQ-EDGAPSFPEGYPYPSMDDLADMLPEVLDHFG------LKSVIGMGVGAGAYILARFALNHPERVLGLVLINCD 156 (326)
T ss_pred cCCCcc-ccCCccCCCCCCCCCHHHHHHHHHHHHHhcC------cceEEEecccccHHHHHHHHhcChhheeEEEEEecC
Confidence 554221 112111122 236677788888877752 346889999999999999999999999999999864
Q ss_pred C
Q 002209 794 Y 794 (953)
Q Consensus 794 ~ 794 (953)
.
T Consensus 157 ~ 157 (326)
T KOG2931|consen 157 P 157 (326)
T ss_pred C
Confidence 3
No 449
>PF13360 PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A 3Q54_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A ....
Probab=94.65 E-value=6.2 Score=40.60 Aligned_cols=52 Identities=12% Similarity=0.039 Sum_probs=28.5
Q ss_pred ccceEEEEEc-CCceeEeCC-CCcccccccCCCCcEEEEEEecCCccccccCCCCCcceEEEeccCce
Q 002209 312 ATTQLVLVSL-DGTVKEIGP-PAVYTSLDPSPDEKYILISSIHRPYSFIVPCGRFPRQVGVWTTDGIF 377 (953)
Q Consensus 312 ~~~~l~~~~~-~g~~~~l~~-~~~~~~~~~SpDG~~l~~~~~~~~~~~~~~~~~~~~~i~~~d~~g~~ 377 (953)
....|+.+|. +|+...-.. +..+... ...++..|++...+ +.++.+|..+++
T Consensus 44 ~~~~l~~~d~~tG~~~W~~~~~~~~~~~-~~~~~~~v~v~~~~-------------~~l~~~d~~tG~ 97 (238)
T PF13360_consen 44 GDGNLYALDAKTGKVLWRFDLPGPISGA-PVVDGGRVYVGTSD-------------GSLYALDAKTGK 97 (238)
T ss_dssp TTSEEEEEETTTSEEEEEEECSSCGGSG-EEEETTEEEEEETT-------------SEEEEEETTTSC
T ss_pred CCCEEEEEECCCCCEEEEeeccccccce-eeecccccccccce-------------eeeEecccCCcc
Confidence 3467889998 887544332 2222221 13355566655522 268888865443
No 450
>KOG0267 consensus Microtubule severing protein katanin p80 subunit B (contains WD40 repeats) [Cell cycle control, cell division, chromosome partitioning]
Probab=94.50 E-value=0.063 Score=60.75 Aligned_cols=114 Identities=10% Similarity=0.084 Sum_probs=66.1
Q ss_pred ceEEEEEc-CC-ceeEeCCC-CcccccccCCCCcEEEEEEecCCccccccCCCCCcceEEEeccCceEEEeccCCCcccC
Q 002209 314 TQLVLVSL-DG-TVKEIGPP-AVYTSLDPSPDEKYILISSIHRPYSFIVPCGRFPRQVGVWTTDGIFVRELCDLPLAEDI 390 (953)
Q Consensus 314 ~~l~~~~~-~g-~~~~l~~~-~~~~~~~~SpDG~~l~~~~~~~~~~~~~~~~~~~~~i~~~d~~g~~~~~l~~~~~~~~~ 390 (953)
+.|-++|+ .+ .++.|+.. ..+.++.|+|=|.+.+-.+.+ .++.+||...........
T Consensus 92 gtiK~wDleeAk~vrtLtgh~~~~~sv~f~P~~~~~a~gStd-------------td~~iwD~Rk~Gc~~~~~------- 151 (825)
T KOG0267|consen 92 GTIKVWDLEEAKIVRTLTGHLLNITSVDFHPYGEFFASGSTD-------------TDLKIWDIRKKGCSHTYK------- 151 (825)
T ss_pred CceeeeehhhhhhhhhhhccccCcceeeeccceEEecccccc-------------ccceehhhhccCceeeec-------
Confidence 34556777 55 56667766 778889999999887544433 378889887322221111
Q ss_pred CccccccccCccceeeccCCCCceEEEEeccCCCcccccccCCeEEEEecCCCCCCCceEEeecccccCCeeeccCC
Q 002209 391 PIAFNSVRKGMRSINWRSDKPSTLYWAETQDGGDAKVEVTPRDIIYTQQAEPVQGEGPEILHKLDLRYGGISWCDDS 467 (953)
Q Consensus 391 p~~~~~~~~~~~~~~wspDg~~i~~~~~~~~~~~~~~~~~~~~~l~~~d~~~~~g~~~~~l~~~~~~~~~~~~SpDg 467 (953)
+...+++.+.|+|||+.++-. +....+-+||+ ..|.-...+..+.+.+..+.|.|-.
T Consensus 152 -----s~~~vv~~l~lsP~Gr~v~~g-------------~ed~tvki~d~--~agk~~~ef~~~e~~v~sle~hp~e 208 (825)
T KOG0267|consen 152 -----SHTRVVDVLRLSPDGRWVASG-------------GEDNTVKIWDL--TAGKLSKEFKSHEGKVQSLEFHPLE 208 (825)
T ss_pred -----CCcceeEEEeecCCCceeecc-------------CCcceeeeecc--cccccccccccccccccccccCchh
Confidence 112345678999999854433 23456777875 2222222233344555555555543
No 451
>COG3319 Thioesterase domains of type I polyketide synthases or non-ribosomal peptide synthetases [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=94.47 E-value=0.086 Score=54.40 Aligned_cols=72 Identities=17% Similarity=0.101 Sum_probs=41.8
Q ss_pred cEEEEcCCCCCCCCCChhhhhhhHHHHHHHHHHHHHHHHHcCCCCCCcEEEEEeChHHHHHHHHHHhC---CCcccEEEE
Q 002209 713 FAILGGPTTPIIGEGDEEANDRFVEQLVACAEAAVEEVVRRGVAHPSKIAVGGHSYGAFMTANLLAHA---PHLFCCGIA 789 (953)
Q Consensus 713 ~~V~~~~~~~~~G~G~~~~~~~~~~~~~~D~~~~~~~l~~~~~~d~~~i~l~G~S~GG~~a~~~a~~~---p~~~~a~v~ 789 (953)
.-|+.. ...|++.........+.++...+++|..+. + ..++.+.|||+||++|..+|.+- .+.+.-+++
T Consensus 27 ~~v~~l---~a~g~~~~~~~~~~l~~~a~~yv~~Ir~~Q--P---~GPy~L~G~S~GG~vA~evA~qL~~~G~~Va~L~l 98 (257)
T COG3319 27 LPVYGL---QAPGYGAGEQPFASLDDMAAAYVAAIRRVQ--P---EGPYVLLGWSLGGAVAFEVAAQLEAQGEEVAFLGL 98 (257)
T ss_pred ceeecc---ccCcccccccccCCHHHHHHHHHHHHHHhC--C---CCCEEEEeeccccHHHHHHHHHHHhCCCeEEEEEE
Confidence 556663 334444322222334566655555554442 2 23799999999999999988753 233444444
Q ss_pred ccc
Q 002209 790 RSG 792 (953)
Q Consensus 790 ~~~ 792 (953)
+..
T Consensus 99 lD~ 101 (257)
T COG3319 99 LDA 101 (257)
T ss_pred ecc
Confidence 443
No 452
>KOG2100 consensus Dipeptidyl aminopeptidase [Posttranslational modification, protein turnover, chaperones]
Probab=94.36 E-value=9.5 Score=46.57 Aligned_cols=65 Identities=9% Similarity=0.074 Sum_probs=39.5
Q ss_pred CeEEEEECCCC-ceEEEeccCcccceeeeEeeccCCccccccccCCEEEEEEecC-CCCceEEEEECCCCCeeEEecC
Q 002209 552 PFLDLFDINTG-SKERIWESDKEKYYETTVALMSDQTEGDLYLNQLKILTSKESK-TENTQYYIQSWPDKKSCQITDF 627 (953)
Q Consensus 552 ~~L~~~d~~~~-~~~~l~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~-~~p~~l~~~~~~~g~~~~Lt~~ 627 (953)
.|+..+....+ ....++.+.+. +... ..++.+.++++|..... ..-.++|.+++.+.....+|..
T Consensus 366 ~hi~~~~~~~~~~~~~lt~g~w~-----v~~i------~~~~~~~~~i~f~~~~~~~~~~~ly~i~~~~~~~~~lt~~ 432 (755)
T KOG2100|consen 366 NHIAYLKLSNGSEPRMLTSGNWE-----VTSI------LGYDKDSNRIYFDAYEEDPSERHLYSISLGSGTVESLTCS 432 (755)
T ss_pred EEEEEEEcCCCCccccccccceE-----EEEe------ccccCCCceEEEEecCCCCCceEEEEEEcccccccccccc
Confidence 45666666555 66666666654 2222 12335667777766654 3446799999888777666643
No 453
>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.
Probab=94.30 E-value=1.3 Score=50.10 Aligned_cols=36 Identities=11% Similarity=0.160 Sum_probs=21.8
Q ss_pred eEEEEEc-CCc-eeEeCCCCcccccccCCCCcEEEEEEe
Q 002209 315 QLVLVSL-DGT-VKEIGPPAVYTSLDPSPDEKYILISSI 351 (953)
Q Consensus 315 ~l~~~~~-~g~-~~~l~~~~~~~~~~~SpDG~~l~~~~~ 351 (953)
.|..+|. +++ .+++.- ..+..+.||+||+++++.+.
T Consensus 127 ~i~~yDw~~~~~i~~i~v-~~vk~V~Ws~~g~~val~t~ 164 (443)
T PF04053_consen 127 FICFYDWETGKLIRRIDV-SAVKYVIWSDDGELVALVTK 164 (443)
T ss_dssp EEEEE-TTT--EEEEESS--E-EEEEE-TTSSEEEEE-S
T ss_pred CEEEEEhhHcceeeEEec-CCCcEEEEECCCCEEEEEeC
Confidence 4778888 664 444443 23678899999999999973
No 454
>TIGR03712 acc_sec_asp2 accessory Sec system protein Asp2. This protein is designated Asp2 because, along with SecY2, SecA2, and other proteins it is part of the accessory secretory protein system. The system is involved in the export of serine-rich glycoproteins important for virulence in a number of Gram-positive species, including Streptococcus gordonii and Staphylococcus aureus. This protein family is assigned to transport rather than glycosylation function, but the specific molecular role is unknown.
Probab=94.30 E-value=1.7 Score=48.19 Aligned_cols=56 Identities=14% Similarity=0.172 Sum_probs=40.1
Q ss_pred hhHHHHHHHHHHHHHHHHHcCCCCCCcEEEEEeChHHHHHHHHHHhCCCcccEEEEcccCCC
Q 002209 734 RFVEQLVACAEAAVEEVVRRGVAHPSKIAVGGHSYGAFMTANLLAHAPHLFCCGIARSGAYN 795 (953)
Q Consensus 734 ~~~~~~~~D~~~~~~~l~~~~~~d~~~i~l~G~S~GG~~a~~~a~~~p~~~~a~v~~~~~~d 795 (953)
.+-...+.-+..++++| + .+.+.+.+.|.|||.+-|++.++.. .-.|+|..-|+.+
T Consensus 336 eyE~~I~~~I~~~L~~L---g-F~~~qLILSGlSMGTfgAlYYga~l--~P~AIiVgKPL~N 391 (511)
T TIGR03712 336 EYEQGIINVIQEKLDYL---G-FDHDQLILSGLSMGTFGALYYGAKL--SPHAIIVGKPLVN 391 (511)
T ss_pred HHHHHHHHHHHHHHHHh---C-CCHHHeeeccccccchhhhhhcccC--CCceEEEcCcccc
Confidence 34334444444555554 3 4678899999999999999999876 2578888888766
No 455
>KOG2565 consensus Predicted hydrolases or acyltransferases (alpha/beta hydrolase superfamily) [General function prediction only]
Probab=94.30 E-value=0.22 Score=52.55 Aligned_cols=117 Identities=20% Similarity=0.217 Sum_probs=71.0
Q ss_pred CCcEEEEEEEcCCCCCCCCCCCccEEEEeCCCCCcCcCCCCcccCCCCCCCCccchHHHHHHHc---C------cEEEEc
Q 002209 648 DGVQLSATLYLPPGYDPSKDGPLPCLFWSYPGEFKSKDAAGQVRGSPNEFPRIGSTSVLLWLAR---G------FAILGG 718 (953)
Q Consensus 648 dg~~~~~~l~~P~~~~~~~~~~~P~vv~~hGg~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~---G------~~V~~~ 718 (953)
.|.+++-.-..|+.- ..++..+|++ ++||+|..-.+ | . .+...|..- | |-|++|
T Consensus 132 eGL~iHFlhvk~p~~-k~~k~v~PlL-l~HGwPGsv~E-----------F---y-kfIPlLT~p~~hg~~~d~~FEVI~P 194 (469)
T KOG2565|consen 132 EGLKIHFLHVKPPQK-KKKKKVKPLL-LLHGWPGSVRE-----------F---Y-KFIPLLTDPKRHGNESDYAFEVIAP 194 (469)
T ss_pred cceeEEEEEecCCcc-ccCCcccceE-EecCCCchHHH-----------H---H-hhhhhhcCccccCCccceeEEEecc
Confidence 678888888888753 3334456655 48998733211 1 1 112222221 2 788884
Q ss_pred CCCCCCCCCChhhhhhhHHHHHHHHHHHHHHHHHcCCCCCCcEEEEEeChHHHHHHHHHHhCCCcccEE
Q 002209 719 PTTPIIGEGDEEANDRFVEQLVACAEAAVEEVVRRGVAHPSKIAVGGHSYGAFMTANLLAHAPHLFCCG 787 (953)
Q Consensus 719 ~~~~~~G~G~~~~~~~~~~~~~~D~~~~~~~l~~~~~~d~~~i~l~G~S~GG~~a~~~a~~~p~~~~a~ 787 (953)
...|+|.|.+....+-..++-+.-..+.+...+ -++.+|-|.-+|.-++..++..+|+.+.+.
T Consensus 195 ---SlPGygwSd~~sk~GFn~~a~ArvmrkLMlRLg---~nkffiqGgDwGSiI~snlasLyPenV~Gl 257 (469)
T KOG2565|consen 195 ---SLPGYGWSDAPSKTGFNAAATARVMRKLMLRLG---YNKFFIQGGDWGSIIGSNLASLYPENVLGL 257 (469)
T ss_pred ---CCCCcccCcCCccCCccHHHHHHHHHHHHHHhC---cceeEeecCchHHHHHHHHHhhcchhhhHh
Confidence 446788886654332222222122223344444 368999999999999999999999987754
No 456
>KOG4388 consensus Hormone-sensitive lipase HSL [Lipid transport and metabolism]
Probab=93.89 E-value=0.053 Score=59.86 Aligned_cols=89 Identities=17% Similarity=0.156 Sum_probs=63.8
Q ss_pred ccEEEEeCCCCCcCcCCCCcccCCCCCCCCccchHHHHHH-HcCcEEEEcCCCCCCCCCChhhhhhhHHHHHHHHHHHHH
Q 002209 670 LPCLFWSYPGEFKSKDAAGQVRGSPNEFPRIGSTSVLLWL-ARGFAILGGPTTPIIGEGDEEANDRFVEQLVACAEAAVE 748 (953)
Q Consensus 670 ~P~vv~~hGg~~~~~~~~~~~~~~~~~~~~~~~~~~~~la-~~G~~V~~~~~~~~~G~G~~~~~~~~~~~~~~D~~~~~~ 748 (953)
.-+|+.+|||.+ +......+. .+.+.|+ +.|+-|+.++| +.+++..++...+.+.-|.-
T Consensus 396 ~sli~HcHGGGf--------VAqsSkSHE----~YLr~Wa~aL~cPiiSVdY--------SLAPEaPFPRaleEv~fAYc 455 (880)
T KOG4388|consen 396 RSLIVHCHGGGF--------VAQSSKSHE----PYLRSWAQALGCPIISVDY--------SLAPEAPFPRALEEVFFAYC 455 (880)
T ss_pred ceEEEEecCCce--------eeecccccc----HHHHHHHHHhCCCeEEeee--------ccCCCCCCCcHHHHHHHHHH
Confidence 358999999854 333222332 3345566 46999999777 56666677888888888999
Q ss_pred HHHHc----CCCCCCcEEEEEeChHHHHHHHHHHh
Q 002209 749 EVVRR----GVAHPSKIAVGGHSYGAFMTANLLAH 779 (953)
Q Consensus 749 ~l~~~----~~~d~~~i~l~G~S~GG~~a~~~a~~ 779 (953)
|++.+ ++ ..+||.+.|-|.||.+.+-++.+
T Consensus 456 W~inn~allG~-TgEriv~aGDSAGgNL~~~VaLr 489 (880)
T KOG4388|consen 456 WAINNCALLGS-TGERIVLAGDSAGGNLCFTVALR 489 (880)
T ss_pred HHhcCHHHhCc-ccceEEEeccCCCcceeehhHHH
Confidence 98875 33 46899999999999987666543
No 457
>TIGR03300 assembly_YfgL outer membrane assembly lipoprotein YfgL. Members of this protein family are YfgL, a lipoprotein component of a complex that acts protein insertion into the bacterial outer membrane. Other members of this complex are NlpB, YfiO, and YaeT. This protein contains multiple copies of a repeat that, in other contexts, are associated with binding of the coenzyme PQQ.
Probab=93.61 E-value=15 Score=41.09 Aligned_cols=55 Identities=13% Similarity=0.078 Sum_probs=29.7
Q ss_pred eEEEEECCCCceEEEeccCcccceeeeEeeccCCccccccccCCEEEEEEecCCCCceEEEEECCCCCeeE
Q 002209 553 FLDLFDINTGSKERIWESDKEKYYETTVALMSDQTEGDLYLNQLKILTSKESKTENTQYYIQSWPDKKSCQ 623 (953)
Q Consensus 553 ~L~~~d~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~p~~l~~~~~~~g~~~~ 623 (953)
.|+.+|..+|+. +|..... ......+....+..+++.... ..++.++..+|+...
T Consensus 290 ~l~~~d~~tG~~--~W~~~~~----------~~~~~ssp~i~g~~l~~~~~~----G~l~~~d~~tG~~~~ 344 (377)
T TIGR03300 290 VVVALDRRSGSE--LWKNDEL----------KYRQLTAPAVVGGYLVVGDFE----GYLHWLSREDGSFVA 344 (377)
T ss_pred eEEEEECCCCcE--EEccccc----------cCCccccCEEECCEEEEEeCC----CEEEEEECCCCCEEE
Confidence 499999988863 4544211 000001112235555554322 468999988887654
No 458
>KOG2041 consensus WD40 repeat protein [General function prediction only]
Probab=93.56 E-value=0.32 Score=55.11 Aligned_cols=31 Identities=0% Similarity=-0.121 Sum_probs=21.6
Q ss_pred CceeEeCCCCcccccccCCCCcEEEEEEecC
Q 002209 323 GTVKEIGPPAVYTSLDPSPDEKYILISSIHR 353 (953)
Q Consensus 323 g~~~~l~~~~~~~~~~~SpDG~~l~~~~~~~ 353 (953)
.++..+..+-.+....|+|+|..||+..++.
T Consensus 250 ~~Pvv~dtgm~~vgakWnh~G~vLAvcG~~~ 280 (1189)
T KOG2041|consen 250 PEPVVVDTGMKIVGAKWNHNGAVLAVCGNDS 280 (1189)
T ss_pred CCCeEEecccEeecceecCCCcEEEEccCcc
Confidence 3444444444567889999999999887553
No 459
>KOG3975 consensus Uncharacterized conserved protein [Function unknown]
Probab=93.54 E-value=1.9 Score=43.19 Aligned_cols=44 Identities=11% Similarity=0.085 Sum_probs=30.7
Q ss_pred CCcEEEEEeCCCCCCCCchHHHHHHHHHHHhCCCcEEEEEeCCCCccCC
Q 002209 830 KKPILLVHGEEDNNSGTLTMQSDRFFNALKGHGALCRLVILPFESHGYA 878 (953)
Q Consensus 830 ~~P~Li~~G~~D~~v~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~H~~~ 878 (953)
..-+-+..|+.|.-|| ......+.+.+++- ++++.+ .+..|.|-
T Consensus 242 ~d~l~Fyygt~DgW~p--~~~~d~~kdd~~ee--d~~Lde-dki~HAFV 285 (301)
T KOG3975|consen 242 LDSLWFYYGTNDGWVP--SHYYDYYKDDVPEE--DLKLDE-DKIPHAFV 285 (301)
T ss_pred CcEEEEEccCCCCCcc--hHHHHHHhhhcchh--ceeecc-ccCCccee
Confidence 3567888999999998 66666655555433 456655 67889884
No 460
>KOG1551 consensus Uncharacterized conserved protein [Function unknown]
Probab=93.44 E-value=0.39 Score=48.06 Aligned_cols=66 Identities=17% Similarity=0.085 Sum_probs=39.1
Q ss_pred ccCCCCCc-----EEEEEeCCCCCCCCchHHHHHHHHHHHhCCCcEEEEEeCCCCccCCCcccHHHHHHHHHHHHHHh
Q 002209 825 SANKLKKP-----ILLVHGEEDNNSGTLTMQSDRFFNALKGHGALCRLVILPFESHGYAARESIMHVLWETDRWLQKY 897 (953)
Q Consensus 825 ~~~~i~~P-----~Li~~G~~D~~v~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~H~~~~~~~~~~~~~~i~~fl~~~ 897 (953)
.+.+..+| +.++..++|..+| -.....+-+... |..++ ..+ .||.-...-....+.+.|.+-|++.
T Consensus 296 ~v~~fp~Pvdpsl~ivv~A~~D~Yip--r~gv~~lQ~~WP--g~eVr--~~e-gGHVsayl~k~dlfRR~I~d~L~R~ 366 (371)
T KOG1551|consen 296 HVANFPVPVDPSLIIVVQAKEDAYIP--RTGVRSLQEIWP--GCEVR--YLE-GGHVSAYLFKQDLFRRAIVDGLDRL 366 (371)
T ss_pred hhhcCCCCCCCCeEEEEEecCCcccc--ccCcHHHHHhCC--CCEEE--Eee-cCceeeeehhchHHHHHHHHHHHhh
Confidence 44444444 5777899999987 544444444432 44444 455 4896543333445667788877763
No 461
>KOG2111 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=93.33 E-value=4.4 Score=42.06 Aligned_cols=86 Identities=9% Similarity=0.103 Sum_probs=59.6
Q ss_pred CCeEEEEecCCCCCCCceEEeecccccCCeeeccCCceEEEEEecccCceEEEEEcCCCCCCCcEEeecCC--CccccCC
Q 002209 432 RDIIYTQQAEPVQGEGPEILHKLDLRYGGISWCDDSLALVYESWYKTRRTRTWVISPGSKDVAPRILFDRS--SEDVYSD 509 (953)
Q Consensus 432 ~~~l~~~d~~~~~g~~~~~l~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~--~~~~~~~ 509 (953)
.++|-+.|+....-+.+..+..++.++..++.+-+|..|+.++..++ -|.++|..+| +...-..+. ..++|.
T Consensus 158 ~GqvQi~dL~~~~~~~p~~I~AH~s~Iacv~Ln~~Gt~vATaStkGT---LIRIFdt~~g--~~l~E~RRG~d~A~iy~- 231 (346)
T KOG2111|consen 158 TGQVQIVDLASTKPNAPSIINAHDSDIACVALNLQGTLVATASTKGT---LIRIFDTEDG--TLLQELRRGVDRADIYC- 231 (346)
T ss_pred cceEEEEEhhhcCcCCceEEEcccCceeEEEEcCCccEEEEeccCcE---EEEEEEcCCC--cEeeeeecCCchheEEE-
Confidence 46777888611111234677888989999999999999988876553 4677787775 333333332 234555
Q ss_pred CCCCCeEeccCCCEEEEEe
Q 002209 510 PGSPMMRRTSTGTYVIAKI 528 (953)
Q Consensus 510 ~~~p~~~~SpDG~~l~~~~ 528 (953)
++||||++||+..+
T Consensus 232 -----iaFSp~~s~LavsS 245 (346)
T KOG2111|consen 232 -----IAFSPNSSWLAVSS 245 (346)
T ss_pred -----EEeCCCccEEEEEc
Confidence 89999999999887
No 462
>COG4782 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=93.29 E-value=0.36 Score=51.19 Aligned_cols=55 Identities=15% Similarity=0.117 Sum_probs=41.1
Q ss_pred HHHHHHHHHHHHHHHHcCCCCCCcEEEEEeChHHHHHHHHHHh--------CCCcccEEEEcccC
Q 002209 737 EQLVACAEAAVEEVVRRGVAHPSKIAVGGHSYGAFMTANLLAH--------APHLFCCGIARSGA 793 (953)
Q Consensus 737 ~~~~~D~~~~~~~l~~~~~~d~~~i~l~G~S~GG~~a~~~a~~--------~p~~~~a~v~~~~~ 793 (953)
.+-..++...+.+|.+...+ ++|.|+.||||.++++.++-+ .+..|+-+|+.+|=
T Consensus 171 ~~Sr~aLe~~lr~La~~~~~--~~I~ilAHSMGtwl~~e~LrQLai~~~~~l~~ki~nViLAaPD 233 (377)
T COG4782 171 NYSRPALERLLRYLATDKPV--KRIYLLAHSMGTWLLMEALRQLAIRADRPLPAKIKNVILAAPD 233 (377)
T ss_pred hhhHHHHHHHHHHHHhCCCC--ceEEEEEecchHHHHHHHHHHHhccCCcchhhhhhheEeeCCC
Confidence 45567888899999887643 589999999999999877643 12346777776663
No 463
>KOG3881 consensus Uncharacterized conserved protein [Function unknown]
Probab=93.22 E-value=3.9 Score=43.60 Aligned_cols=98 Identities=8% Similarity=-0.028 Sum_probs=58.4
Q ss_pred ccCCeEEEEecCCCCCCCceE-EeecccccCCeeeccCCceEEEEEecccCceEEEEEcCCCCCCCcEEe-ecCCCcccc
Q 002209 430 TPRDIIYTQQAEPVQGEGPEI-LHKLDLRYGGISWCDDSLALVYESWYKTRRTRTWVISPGSKDVAPRIL-FDRSSEDVY 507 (953)
Q Consensus 430 ~~~~~l~~~d~~~~~g~~~~~-l~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~l~~~d~~~~~~~~~~~-~~~~~~~~~ 507 (953)
....++.+||. ..+..+.. +.-.+..++.+...|+|..|+++.... .|..+|..++. ...- ...-.+.+.
T Consensus 223 T~~hqvR~YDt--~~qRRPV~~fd~~E~~is~~~l~p~gn~Iy~gn~~g----~l~~FD~r~~k--l~g~~~kg~tGsir 294 (412)
T KOG3881|consen 223 TRYHQVRLYDT--RHQRRPVAQFDFLENPISSTGLTPSGNFIYTGNTKG----QLAKFDLRGGK--LLGCGLKGITGSIR 294 (412)
T ss_pred ecceeEEEecC--cccCcceeEeccccCcceeeeecCCCcEEEEecccc----hhheecccCce--eeccccCCccCCcc
Confidence 45678999983 43333322 233345566788899999987764332 67788877641 1111 122122111
Q ss_pred CCCCCCCeEeccCCCEEEEEeeeccCCCcEEEEecCCCCCCCCCCeEEEEECCCC
Q 002209 508 SDPGSPMMRRTSTGTYVIAKIKKENDEGTYILLNGNGATPEGNIPFLDLFDINTG 562 (953)
Q Consensus 508 ~~~~~p~~~~SpDG~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~d~~~~ 562 (953)
+ +...|.++.|+....++ +|.++|+++.
T Consensus 295 s------ih~hp~~~~las~GLDR---------------------yvRIhD~ktr 322 (412)
T KOG3881|consen 295 S------IHCHPTHPVLASCGLDR---------------------YVRIHDIKTR 322 (412)
T ss_pred e------EEEcCCCceEEeeccce---------------------eEEEeecccc
Confidence 1 66778888888777554 4888998773
No 464
>PRK13614 lipoprotein LpqB; Provisional
Probab=93.21 E-value=2.6 Score=49.04 Aligned_cols=62 Identities=6% Similarity=-0.063 Sum_probs=36.0
Q ss_pred CCcccceEeccCCCeEEEEEeeccccCCCCcceEEEEECCC-Cc-------eeecccCCCccccccccceEEecCCeEEE
Q 002209 188 GAKLNFVTWSQDGKHLAFSIRIDAEDSSSSKLRVWVADVDT-GK-------ARPLFQSPDIYLNAIFDNFVWVNNSTLLV 259 (953)
Q Consensus 188 ~~~~~~~~wSPDG~~laf~~~~~~~~~~~~~~~l~~~d~~~-g~-------~~~lt~~~~~~~~~~~~~~~wspDg~~l~ 259 (953)
+.....|+|.++| ++....+ +....|..+..++ ++ ........+. .+..+..|+||.+++
T Consensus 382 g~~Lt~PS~d~~g-~vWtv~~-------g~~~~vv~~~~~g~~~~~~~~~~~v~~~~l~g~----~I~~lrvSrDG~R~A 449 (573)
T PRK13614 382 GSTLTRPSFSPQD-WVWTAGP-------GGNGRIVAYRPTGVAEGAQAPTVTLTADWLAGR----TVKELRVSREGVRAL 449 (573)
T ss_pred CCCccCCcccCCC-CEEEeeC-------CCCceEEEEecCCCcccccccceeecccccCCC----eeEEEEECCCccEEE
Confidence 3467889999999 6665432 1223555555432 22 1111111111 277899999999888
Q ss_pred EE
Q 002209 260 CT 261 (953)
Q Consensus 260 ~~ 261 (953)
+.
T Consensus 450 vi 451 (573)
T PRK13614 450 VI 451 (573)
T ss_pred EE
Confidence 76
No 465
>KOG2321 consensus WD40 repeat protein [General function prediction only]
Probab=93.09 E-value=15 Score=41.39 Aligned_cols=41 Identities=12% Similarity=0.160 Sum_probs=28.5
Q ss_pred ccCCeeeccCCceEEEEEecccCceEEEEEcCCCCCCCcEEeecCCC
Q 002209 457 RYGGISWCDDSLALVYESWYKTRRTRTWVISPGSKDVAPRILFDRSS 503 (953)
Q Consensus 457 ~~~~~~~SpDg~~l~~~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~ 503 (953)
.+..+.|+.||-.++.....+ .++++|+.+ .++..+-+...
T Consensus 230 svTal~F~d~gL~~aVGts~G----~v~iyDLRa--~~pl~~kdh~~ 270 (703)
T KOG2321|consen 230 SVTALKFRDDGLHVAVGTSTG----SVLIYDLRA--SKPLLVKDHGY 270 (703)
T ss_pred cceEEEecCCceeEEeeccCC----cEEEEEccc--CCceeecccCC
Confidence 366789999998888765433 688888877 35555555433
No 466
>PF13449 Phytase-like: Esterase-like activity of phytase
Probab=93.08 E-value=16 Score=39.88 Aligned_cols=149 Identities=15% Similarity=0.108 Sum_probs=76.5
Q ss_pred cccccccCCCCcEEEEEEecCCccccccCCCCCcceEEEeccCceEEEeccCCCcccCC--ccccccccCccceeeccCC
Q 002209 333 VYTSLDPSPDEKYILISSIHRPYSFIVPCGRFPRQVGVWTTDGIFVRELCDLPLAEDIP--IAFNSVRKGMRSINWRSDK 410 (953)
Q Consensus 333 ~~~~~~~SpDG~~l~~~~~~~~~~~~~~~~~~~~~i~~~d~~g~~~~~l~~~~~~~~~p--~~~~~~~~~~~~~~wspDg 410 (953)
...++++.+||..++..- ... .......|+.++.+|...+.+.......... ..-...+.|..+++++|||
T Consensus 86 D~Egi~~~~~g~~~is~E-~~~------~~~~~p~I~~~~~~G~~~~~~~vP~~~~~~~~~~~~~~~N~G~E~la~~~dG 158 (326)
T PF13449_consen 86 DPEGIAVPPDGSFWISSE-GGR------TGGIPPRIRRFDLDGRVIRRFPVPAAFLPDANGTSGRRNNRGFEGLAVSPDG 158 (326)
T ss_pred ChhHeEEecCCCEEEEeC-Ccc------CCCCCCEEEEECCCCcccceEccccccccccCccccccCCCCeEEEEECCCC
Confidence 344667766775444332 210 0111247888888866655542211110000 0111234566789999999
Q ss_pred CCceEEEEec---cCCCcccccccCCeEEEEecCCCCCCC-ceEE----ee-----cccccCCeeeccCCceEEEEEec-
Q 002209 411 PSTLYWAETQ---DGGDAKVEVTPRDIIYTQQAEPVQGEG-PEIL----HK-----LDLRYGGISWCDDSLALVYESWY- 476 (953)
Q Consensus 411 ~~i~~~~~~~---~~~~~~~~~~~~~~l~~~d~~~~~g~~-~~~l----~~-----~~~~~~~~~~SpDg~~l~~~~~~- 476 (953)
+.|+...+.. ++.......+..-+++.++. .+.+. ...+ .. ....+..+.+-+|++.|+.....
T Consensus 159 ~~l~~~~E~~l~~d~~~~~~~~~~~~ri~~~d~--~~~~~~~~~~~y~ld~~~~~~~~~~isd~~al~d~~lLvLER~~~ 236 (326)
T PF13449_consen 159 RTLFAAMESPLKQDGPRANPDNGSPLRILRYDP--KTPGEPVAEYAYPLDPPPTAPGDNGISDIAALPDGRLLVLERDFS 236 (326)
T ss_pred CEEEEEECccccCCCcccccccCceEEEEEecC--CCCCccceEEEEeCCccccccCCCCceeEEEECCCcEEEEEccCC
Confidence 9777766543 22111111122235566663 33221 2221 11 23455678899999977776542
Q ss_pred --ccCceEEEEEcCCC
Q 002209 477 --KTRRTRTWVISPGS 490 (953)
Q Consensus 477 --~~~~~~l~~~d~~~ 490 (953)
.....+||.+++..
T Consensus 237 ~~~~~~~ri~~v~l~~ 252 (326)
T PF13449_consen 237 PGTGNYKRIYRVDLSD 252 (326)
T ss_pred CCccceEEEEEEEccc
Confidence 12346899999865
No 467
>PRK13613 lipoprotein LpqB; Provisional
Probab=93.05 E-value=6.4 Score=46.38 Aligned_cols=57 Identities=18% Similarity=0.125 Sum_probs=37.2
Q ss_pred cccceEeccCCCeEEEEEeeccccCCCCcceEEEEECCCCce-----eecccCCCccccccccceEEecCCeEEEEE
Q 002209 190 KLNFVTWSQDGKHLAFSIRIDAEDSSSSKLRVWVADVDTGKA-----RPLFQSPDIYLNAIFDNFVWVNNSTLLVCT 261 (953)
Q Consensus 190 ~~~~~~wSPDG~~laf~~~~~~~~~~~~~~~l~~~d~~~g~~-----~~lt~~~~~~~~~~~~~~~wspDg~~l~~~ 261 (953)
.+..++.|+||+.+|+... ....||+-.+.++.. +.+..... +..+.|.++| .++..
T Consensus 364 ~~~s~avS~~g~~~A~v~~--------~~~~l~vg~~~~~~~~~~~~~~~~~~~~------Lt~PS~d~~g-~vWtv 425 (599)
T PRK13613 364 PLRRVAVSRDESRAAGISA--------DGDSVYVGSLTPGASIGVHSWGVTADGR------LTSPSWDGRG-DLWVV 425 (599)
T ss_pred CccceEEcCCCceEEEEcC--------CCcEEEEeccCCCCccccccceeeccCc------ccCCcCcCCC-CEEEe
Confidence 5778999999999999742 245788876544332 23333222 5578898888 56543
No 468
>PLN02209 serine carboxypeptidase
Probab=92.97 E-value=0.67 Score=52.33 Aligned_cols=151 Identities=13% Similarity=0.057 Sum_probs=79.5
Q ss_pred EEEEEEcCCCcEEEEEEEcCCCCCCCCCCCccEEEEeCCCCCcCcCCCCcccCCCCCCCCcc--------chHHHHHHHc
Q 002209 640 ELIKYQRKDGVQLSATLYLPPGYDPSKDGPLPCLFWSYPGEFKSKDAAGQVRGSPNEFPRIG--------STSVLLWLAR 711 (953)
Q Consensus 640 ~~~~~~~~dg~~~~~~l~~P~~~~~~~~~~~P~vv~~hGg~~~~~~~~~~~~~~~~~~~~~~--------~~~~~~la~~ 711 (953)
..+.+....+..+..+++.... ++. ..|+|+|+-|||..+.-......-||.....-. ......|.+.
T Consensus 42 Gy~~v~~~~~~~lf~~f~es~~-~~~---~~Pl~lWlnGGPG~SS~~g~f~e~GP~~~~~~~~~~~~~~l~~n~~sW~~~ 117 (437)
T PLN02209 42 GYIGIGEEENVQFFYYFIKSDK-NPQ---EDPLIIWLNGGPGCSCLSGLFFENGPLALKNKVYNGSVPSLVSTTYSWTKT 117 (437)
T ss_pred EEEEecCCCCeEEEEEEEecCC-CCC---CCCEEEEECCCCcHHHhhhHHHhcCCceeccCCCCCCcccceeCCCchhhc
Confidence 3455554456667777765432 222 379999999998776543333333443322110 0001123333
Q ss_pred CcEEEEcCCCCCCCCCChhhhh--hhHHHHHHHHHHHHHHHH-HcCCCCCCcEEEEEeChHHHHHHHHHHh----C----
Q 002209 712 GFAILGGPTTPIIGEGDEEAND--RFVEQLVACAEAAVEEVV-RRGVAHPSKIAVGGHSYGAFMTANLLAH----A---- 780 (953)
Q Consensus 712 G~~V~~~~~~~~~G~G~~~~~~--~~~~~~~~D~~~~~~~l~-~~~~~d~~~i~l~G~S~GG~~a~~~a~~----~---- 780 (953)
..++..|-.-.+|+....... ..-....+|+..++.... ..+.....++.|+|.||||..+-.++.. .
T Consensus 118 -anllfiDqPvGtGfSy~~~~~~~~~~~~~a~~~~~fl~~f~~~~p~~~~~~~yi~GESYaG~yvP~~a~~i~~~~~~~~ 196 (437)
T PLN02209 118 -ANIIFLDQPVGSGFSYSKTPIERTSDTSEVKKIHEFLQKWLIKHPQFLSNPFYVVGDSYSGMIVPALVHEISKGNYICC 196 (437)
T ss_pred -CcEEEecCCCCCCccCCCCCCCccCCHHHHHHHHHHHHHHHHhCccccCCCEEEEecCcCceehHHHHHHHHhhccccc
Confidence 344443433334444322111 111233466666665443 3454555689999999999866555532 1
Q ss_pred -C-CcccEEEEcccCCC
Q 002209 781 -P-HLFCCGIARSGAYN 795 (953)
Q Consensus 781 -p-~~~~a~v~~~~~~d 795 (953)
+ =.++++++..|..|
T Consensus 197 ~~~inl~Gi~igng~td 213 (437)
T PLN02209 197 NPPINLQGYVLGNPITH 213 (437)
T ss_pred CCceeeeeEEecCcccC
Confidence 1 13788888888665
No 469
>PF11768 DUF3312: Protein of unknown function (DUF3312); InterPro: IPR024511 This is a eukaryotic family of uncharacterised proteins that contain WD40 repeats.
Probab=92.92 E-value=8.8 Score=43.52 Aligned_cols=141 Identities=13% Similarity=0.103 Sum_probs=82.0
Q ss_pred ceEEEEEc-CCceeEeCC---CCcccccccCCCCcEEEEEEecCCccccccCCCCCcceEEEeccCceEEEec--cCCCc
Q 002209 314 TQLVLVSL-DGTVKEIGP---PAVYTSLDPSPDEKYILISSIHRPYSFIVPCGRFPRQVGVWTTDGIFVRELC--DLPLA 387 (953)
Q Consensus 314 ~~l~~~~~-~g~~~~l~~---~~~~~~~~~SpDG~~l~~~~~~~~~~~~~~~~~~~~~i~~~d~~g~~~~~l~--~~~~~ 387 (953)
.+|.++.+ .++...+.- ....-.+.||-.-.+.+++....-. ..++..-+..+|+...+..+.+. ..+..
T Consensus 184 aNl~L~~~~~~klEvL~yirTE~dPl~~~Fs~~~~~qi~tVE~s~s----~~g~~~~d~ciYE~~r~klqrvsvtsipL~ 259 (545)
T PF11768_consen 184 ANLHLLSCSGGKLEVLSYIRTENDPLDVEFSLNQPYQIHTVEQSIS----VKGEPSADSCIYECSRNKLQRVSVTSIPLP 259 (545)
T ss_pred ccEEEEEecCCcEEEEEEEEecCCcEEEEccCCCCcEEEEEEEecC----CCCCceeEEEEEEeecCceeEEEEEEEecC
Confidence 46777777 445555432 1344566777744444444432200 00111224556666655555443 32221
Q ss_pred ccCCccccccccCccceeeccCCCCceEEEEeccCCCcccccccCCeEEEEecCCCCCCCceEEeecccccCCeeeccCC
Q 002209 388 EDIPIAFNSVRKGMRSINWRSDKPSTLYWAETQDGGDAKVEVTPRDIIYTQQAEPVQGEGPEILHKLDLRYGGISWCDDS 467 (953)
Q Consensus 388 ~~~p~~~~~~~~~~~~~~wspDg~~i~~~~~~~~~~~~~~~~~~~~~l~~~d~~~~~g~~~~~l~~~~~~~~~~~~SpDg 467 (953)
..+...+++|+.+.++.. -.++.+.++|. ......++........++|.|||
T Consensus 260 -----------s~v~~ca~sp~E~kLvlG-------------C~DgSiiLyD~----~~~~t~~~ka~~~P~~iaWHp~g 311 (545)
T PF11768_consen 260 -----------SQVICCARSPSEDKLVLG-------------CEDGSIILYDT----TRGVTLLAKAEFIPTLIAWHPDG 311 (545)
T ss_pred -----------CcceEEecCcccceEEEE-------------ecCCeEEEEEc----CCCeeeeeeecccceEEEEcCCC
Confidence 345678999999988887 44668899994 23344455556666779999999
Q ss_pred ceEEEEEecccCceEEEEEcCCC
Q 002209 468 LALVYESWYKTRRTRTWVISPGS 490 (953)
Q Consensus 468 ~~l~~~~~~~~~~~~l~~~d~~~ 490 (953)
..++..+..+ .|..+|..-
T Consensus 312 ai~~V~s~qG----elQ~FD~AL 330 (545)
T PF11768_consen 312 AIFVVGSEQG----ELQCFDMAL 330 (545)
T ss_pred cEEEEEcCCc----eEEEEEeec
Confidence 9888775443 455555544
No 470
>KOG0270 consensus WD40 repeat-containing protein [Function unknown]
Probab=92.80 E-value=14 Score=40.12 Aligned_cols=59 Identities=19% Similarity=0.274 Sum_probs=42.0
Q ss_pred ccceEeccCCCeEEEEEeeccccCCCCcceEEEEECCCCceeecccCCCccccccccceEEecCCeEEEEE
Q 002209 191 LNFVTWSQDGKHLAFSIRIDAEDSSSSKLRVWVADVDTGKARPLFQSPDIYLNAIFDNFVWVNNSTLLVCT 261 (953)
Q Consensus 191 ~~~~~wSPDG~~laf~~~~~~~~~~~~~~~l~~~d~~~g~~~~lt~~~~~~~~~~~~~~~wspDg~~l~~~ 261 (953)
+-..+|.-+-+.|++.. +....|-+||+++|++...+...+.. +..+.|.|-.-.+..+
T Consensus 246 vl~Ls~n~~~~nVLaSg--------saD~TV~lWD~~~g~p~~s~~~~~k~----Vq~l~wh~~~p~~LLs 304 (463)
T KOG0270|consen 246 VLALSWNRNFRNVLASG--------SADKTVKLWDVDTGKPKSSITHHGKK----VQTLEWHPYEPSVLLS 304 (463)
T ss_pred HHHHHhccccceeEEec--------CCCceEEEEEcCCCCcceehhhcCCc----eeEEEecCCCceEEEe
Confidence 45678888888888854 34667888899999987776644433 8899999776544433
No 471
>KOG1912 consensus WD40 repeat protein [General function prediction only]
Probab=92.77 E-value=12 Score=43.71 Aligned_cols=67 Identities=7% Similarity=-0.097 Sum_probs=36.4
Q ss_pred ceeeccCCCCceEEEEeccCCCcccccccCCeEEEEecCCCCCCCce-EEeecccccCCeeeccCCce-EEEEEecccCc
Q 002209 403 SINWRSDKPSTLYWAETQDGGDAKVEVTPRDIIYTQQAEPVQGEGPE-ILHKLDLRYGGISWCDDSLA-LVYESWYKTRR 480 (953)
Q Consensus 403 ~~~wspDg~~i~~~~~~~~~~~~~~~~~~~~~l~~~d~~~~~g~~~~-~l~~~~~~~~~~~~SpDg~~-l~~~~~~~~~~ 480 (953)
.++|+|.-+.++|.+ -...++++|+ +-.... .+.-..+...-+.|-||+++ ..|....++ .
T Consensus 235 ~faf~p~~rn~lfi~-------------~prellv~dl---e~~~~l~vvpier~~akfv~vlP~~~rd~LfclH~nG-~ 297 (1062)
T KOG1912|consen 235 QFAFSPHWRNILFIT-------------FPRELLVFDL---EYECCLAVVPIERGGAKFVDVLPDPRRDALFCLHSNG-R 297 (1062)
T ss_pred hhhcChhhhceEEEE-------------eccceEEEcc---hhhceeEEEEeccCCcceeEeccCCCcceEEEEecCC-e
Confidence 478899888888872 2336788885 222111 11222233445778888776 445443332 2
Q ss_pred eEEEEE
Q 002209 481 TRTWVI 486 (953)
Q Consensus 481 ~~l~~~ 486 (953)
..+|+-
T Consensus 298 ltirvr 303 (1062)
T KOG1912|consen 298 LTIRVR 303 (1062)
T ss_pred EEEEEe
Confidence 344443
No 472
>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.
Probab=92.77 E-value=2.6 Score=47.67 Aligned_cols=45 Identities=9% Similarity=0.151 Sum_probs=28.7
Q ss_pred CcEEEEEEecCCccccccCCCCCcceEEEeccC-ceEEEeccCCCcccCCccccccccCccceeeccCCCCceEE
Q 002209 343 EKYILISSIHRPYSFIVPCGRFPRQVGVWTTDG-IFVRELCDLPLAEDIPIAFNSVRKGMRSINWRSDKPSTLYW 416 (953)
Q Consensus 343 G~~l~~~~~~~~~~~~~~~~~~~~~i~~~d~~g-~~~~~l~~~~~~~~~p~~~~~~~~~~~~~~wspDg~~i~~~ 416 (953)
|..|.+.+. ..|.+||.+. ..++++.-. .++.+.||+||+.+++.
T Consensus 117 G~LL~~~~~--------------~~i~~yDw~~~~~i~~i~v~---------------~vk~V~Ws~~g~~val~ 162 (443)
T PF04053_consen 117 GNLLGVKSS--------------DFICFYDWETGKLIRRIDVS---------------AVKYVIWSDDGELVALV 162 (443)
T ss_dssp SSSEEEEET--------------TEEEEE-TTT--EEEEESS----------------E-EEEEE-TTSSEEEEE
T ss_pred CcEEEEECC--------------CCEEEEEhhHcceeeEEecC---------------CCcEEEEECCCCEEEEE
Confidence 887777761 1599999984 445554431 23578999999988887
No 473
>PF01764 Lipase_3: Lipase (class 3); InterPro: IPR002921 Triglyceride lipases are lipolytic enzymes that hydrolyse ester linkages of triglycerides []. Lipases are widely distributed in animals, plants and prokaryotes. This family of lipases have been called Class 3 as they are not closely related to other lipase families.; GO: 0004806 triglyceride lipase activity, 0006629 lipid metabolic process; PDB: 1LGY_A 1DTE_A 1DT5_F 4DYH_B 1DU4_C 4EA6_B 1GT6_B 1EIN_A 1DT3_A 1TIB_A ....
Probab=92.58 E-value=0.28 Score=45.93 Aligned_cols=40 Identities=25% Similarity=0.277 Sum_probs=29.7
Q ss_pred HHHHHHHHHHHHHHHcCCCCCCcEEEEEeChHHHHHHHHHHh
Q 002209 738 QLVACAEAAVEEVVRRGVAHPSKIAVGGHSYGAFMTANLLAH 779 (953)
Q Consensus 738 ~~~~D~~~~~~~l~~~~~~d~~~i~l~G~S~GG~~a~~~a~~ 779 (953)
.....+...++.+.+... ..+|.+.|||+||.+|..++..
T Consensus 45 ~~~~~~~~~l~~~~~~~~--~~~i~itGHSLGGalA~l~a~~ 84 (140)
T PF01764_consen 45 SLYDQILDALKELVEKYP--DYSIVITGHSLGGALASLAAAD 84 (140)
T ss_dssp HHHHHHHHHHHHHHHHST--TSEEEEEEETHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhccc--CccchhhccchHHHHHHHHHHh
Confidence 444556666666665543 3689999999999999888875
No 474
>PRK13613 lipoprotein LpqB; Provisional
Probab=92.42 E-value=3.1 Score=48.97 Aligned_cols=107 Identities=14% Similarity=0.252 Sum_probs=61.5
Q ss_pred CCCCceecCCCCEEEEEecCCCCCccccccccceeceEEecCCCCCCcceeeeeceEEEEccCCCCCCc-eeeeecCCCC
Q 002209 110 PLPALSFSPQRDKILFLKRRALPPLEELARPEEKLAGLRIDGKCNTRSRMSFYTGIGIHQLFPDGKLGQ-EIEIQGFPDG 188 (953)
Q Consensus 110 ~~~~~~~SPDG~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~i~~~~~~g~~~~-~~~l~~~~~~ 188 (953)
.+..+++|+||+.+|++..+ . . .+++-.+..++.... .+.+ + .+
T Consensus 364 ~~~s~avS~~g~~~A~v~~~-------------------------~-~------~l~vg~~~~~~~~~~~~~~~--~-~~ 408 (599)
T PRK13613 364 PLRRVAVSRDESRAAGISAD-------------------------G-D------SVYVGSLTPGASIGVHSWGV--T-AD 408 (599)
T ss_pred CccceEEcCCCceEEEEcCC-------------------------C-c------EEEEeccCCCCcccccccee--e-cc
Confidence 45678899999999988653 1 1 456655422221000 1122 1 23
Q ss_pred CcccceEeccCCCeEEEEEeeccccCCCCcceEEEEECCCCceeecccCCCccccc-cccceEEecCCeEEEEE
Q 002209 189 AKLNFVTWSQDGKHLAFSIRIDAEDSSSSKLRVWVADVDTGKARPLFQSPDIYLNA-IFDNFVWVNNSTLLVCT 261 (953)
Q Consensus 189 ~~~~~~~wSPDG~~laf~~~~~~~~~~~~~~~l~~~d~~~g~~~~lt~~~~~~~~~-~~~~~~wspDg~~l~~~ 261 (953)
.....|+|.++| +|... +.+ .++...|+++.. +|+...+.. +. +.+ .+..+..|+||.++++.
T Consensus 409 ~~Lt~PS~d~~g-~vWtv-d~~----~~~~~vl~v~~~-~G~~~~V~~-~~--l~g~~I~~lrvSrDG~RvAvv 472 (599)
T PRK13613 409 GRLTSPSWDGRG-DLWVV-DRD----PADPRLLWLLQG-DGEPVEVRT-PE--LDGHRVVAVRVARDGVRVALI 472 (599)
T ss_pred CcccCCcCcCCC-CEEEe-cCC----CCCceEEEEEcC-CCcEEEeec-cc--cCCCEeEEEEECCCccEEEEE
Confidence 467889999998 66543 211 122223555553 556544433 21 111 37899999999998877
No 475
>cd00741 Lipase Lipase. Lipases are esterases that can hydrolyze long-chain acyl-triglycerides into di- and monoglycerides, glycerol, and free fatty acids at a water/lipid interface. A typical feature of lipases is "interfacial activation", the process of becoming active at the lipid/water interface, although several examples of lipases have been identified that do not undergo interfacial activation . The active site of a lipase contains a catalytic triad consisting of Ser - His - Asp/Glu, but unlike most serine proteases, the active site is buried inside the structure. A "lid" or "flap" covers the active site, making it inaccessible to solvent and substrates. The lid opens during the process of interfacial activation, allowing the lipid substrate access to the active site.
Probab=92.41 E-value=0.4 Score=45.78 Aligned_cols=43 Identities=19% Similarity=0.144 Sum_probs=29.0
Q ss_pred HHHHHHHHHHHHHHHcCCCCCCcEEEEEeChHHHHHHHHHHhCCC
Q 002209 738 QLVACAEAAVEEVVRRGVAHPSKIAVGGHSYGAFMTANLLAHAPH 782 (953)
Q Consensus 738 ~~~~D~~~~~~~l~~~~~~d~~~i~l~G~S~GG~~a~~~a~~~p~ 782 (953)
.....+...++..... ....+|.++|||+||.+|..++.....
T Consensus 9 ~~~~~i~~~~~~~~~~--~p~~~i~v~GHSlGg~lA~l~a~~~~~ 51 (153)
T cd00741 9 SLANLVLPLLKSALAQ--YPDYKIHVTGHSLGGALAGLAGLDLRG 51 (153)
T ss_pred HHHHHHHHHHHHHHHH--CCCCeEEEEEcCHHHHHHHHHHHHHHh
Confidence 3344444445444433 134699999999999999998886643
No 476
>PF05057 DUF676: Putative serine esterase (DUF676); InterPro: IPR007751 This domain, whose function is unknown, is found within a group of putative lipases.
Probab=92.32 E-value=0.14 Score=52.04 Aligned_cols=21 Identities=33% Similarity=0.468 Sum_probs=18.1
Q ss_pred CCcEEEEEeChHHHHHHHHHH
Q 002209 758 PSKIAVGGHSYGAFMTANLLA 778 (953)
Q Consensus 758 ~~~i~l~G~S~GG~~a~~~a~ 778 (953)
..+|.++|||+||.++-.++.
T Consensus 77 ~~~IsfIgHSLGGli~r~al~ 97 (217)
T PF05057_consen 77 IRKISFIGHSLGGLIARYALG 97 (217)
T ss_pred cccceEEEecccHHHHHHHHH
Confidence 358999999999999977766
No 477
>COG2319 FOG: WD40 repeat [General function prediction only]
Probab=92.31 E-value=21 Score=39.51 Aligned_cols=161 Identities=18% Similarity=0.146 Sum_probs=79.6
Q ss_pred eEEEEEc-C-C-ceeEeCCC-CcccccccCCCCcEEEEEEecCCccccccCCCCCcceEEEeccCc-eEEEeccCCCccc
Q 002209 315 QLVLVSL-D-G-TVKEIGPP-AVYTSLDPSPDEKYILISSIHRPYSFIVPCGRFPRQVGVWTTDGI-FVRELCDLPLAED 389 (953)
Q Consensus 315 ~l~~~~~-~-g-~~~~l~~~-~~~~~~~~SpDG~~l~~~~~~~~~~~~~~~~~~~~~i~~~d~~g~-~~~~l~~~~~~~~ 389 (953)
.+..++. . + ....+... ..+..+.|+|+++.++.... ....+.+|++..+ ....+..+
T Consensus 135 ~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~------------~~~~~~~~~~~~~~~~~~~~~~----- 197 (466)
T COG2319 135 TVKLWDLSTPGKLIRTLEGHSESVTSLAFSPDGKLLASGSS------------LDGTIKLWDLRTGKPLSTLAGH----- 197 (466)
T ss_pred cEEEEEecCCCeEEEEEecCcccEEEEEECCCCCEEEecCC------------CCCceEEEEcCCCceEEeeccC-----
Confidence 3445555 3 2 33333333 66778999999996665542 1348889999853 33333321
Q ss_pred CCccccccccCccceeeccCCCCceEEEEeccCCCcccccccCCeEEEEecCCCCCCCceE--EeecccccCCeeeccCC
Q 002209 390 IPIAFNSVRKGMRSINWRSDKPSTLYWAETQDGGDAKVEVTPRDIIYTQQAEPVQGEGPEI--LHKLDLRYGGISWCDDS 467 (953)
Q Consensus 390 ~p~~~~~~~~~~~~~~wspDg~~i~~~~~~~~~~~~~~~~~~~~~l~~~d~~~~~g~~~~~--l~~~~~~~~~~~~SpDg 467 (953)
...+..++|+|+++ .++.. . .....+.+|+. ..+.... +..+.... ...|++++
T Consensus 198 --------~~~v~~~~~~~~~~-~~~~~-~----------~~d~~i~~wd~---~~~~~~~~~~~~~~~~~-~~~~~~~~ 253 (466)
T COG2319 198 --------TDPVSSLAFSPDGG-LLIAS-G----------SSDGTIRLWDL---STGKLLRSTLSGHSDSV-VSSFSPDG 253 (466)
T ss_pred --------CCceEEEEEcCCcc-eEEEE-e----------cCCCcEEEEEC---CCCcEEeeecCCCCcce-eEeECCCC
Confidence 13346788999998 22221 0 22334446664 2222221 22222221 12799999
Q ss_pred ceEEEEEecccCceEEEEEcCCCCCCCcEEeecCCCccccCCCCCCCeEeccCCCEEEEE
Q 002209 468 LALVYESWYKTRRTRTWVISPGSKDVAPRILFDRSSEDVYSDPGSPMMRRTSTGTYVIAK 527 (953)
Q Consensus 468 ~~l~~~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~SpDG~~l~~~ 527 (953)
..++..... ...++|.+.... ........+...+.. +.|+|++..++..
T Consensus 254 ~~~~~~~~d--~~~~~~~~~~~~---~~~~~~~~~~~~v~~------~~~~~~~~~~~~~ 302 (466)
T COG2319 254 SLLASGSSD--GTIRLWDLRSSS---SLLRTLSGHSSSVLS------VAFSPDGKLLASG 302 (466)
T ss_pred CEEEEecCC--CcEEEeeecCCC---cEEEEEecCCccEEE------EEECCCCCEEEEe
Confidence 655533222 223455444332 112222122222222 5688888777763
No 478
>PF05694 SBP56: 56kDa selenium binding protein (SBP56); InterPro: IPR008826 This family consists of several eukaryotic selenium binding proteins as well as three sequences from archaea. The exact function of this protein is unknown although it is thought that SBP56 participates in late stages of intra-Golgi protein transport []. The Lotus japonicus homologue of SBP56, LjSBP is thought to have more than one physiological role and can be implicated in controlling the oxidation/reduction status of target proteins in vesicular Golgi transport [].; GO: 0008430 selenium binding; PDB: 2ECE_A.
Probab=92.16 E-value=3.2 Score=45.57 Aligned_cols=67 Identities=13% Similarity=0.106 Sum_probs=35.2
Q ss_pred cCCeeeccCCceEEEEEecccCceEEEEEcCCCCCCCcEEeecCCCcc---------cc---CCCCCCCeEeccCCCEEE
Q 002209 458 YGGISWCDDSLALVYESWYKTRRTRTWVISPGSKDVAPRILFDRSSED---------VY---SDPGSPMMRRTSTGTYVI 525 (953)
Q Consensus 458 ~~~~~~SpDg~~l~~~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~---------~~---~~~~~p~~~~SpDG~~l~ 525 (953)
+..+..|.|.|+|+++.|-.+ .++.+|.... .+++..-...... +. -..+..|++.|.||++|+
T Consensus 314 itDI~iSlDDrfLYvs~W~~G---dvrqYDISDP-~~Pkl~gqv~lGG~~~~~~~~~v~g~~l~GgPqMvqlS~DGkRlY 389 (461)
T PF05694_consen 314 ITDILISLDDRFLYVSNWLHG---DVRQYDISDP-FNPKLVGQVFLGGSIRKGDHPVVKGKRLRGGPQMVQLSLDGKRLY 389 (461)
T ss_dssp ---EEE-TTS-EEEEEETTTT---EEEEEE-SST-TS-EEEEEEE-BTTTT-B--TTS------S----EEE-TTSSEEE
T ss_pred eEeEEEccCCCEEEEEcccCC---cEEEEecCCC-CCCcEEeEEEECcEeccCCCccccccccCCCCCeEEEccCCeEEE
Confidence 456789999999999988663 6777777665 3555543211111 00 111345689999999999
Q ss_pred EEe
Q 002209 526 AKI 528 (953)
Q Consensus 526 ~~~ 528 (953)
++.
T Consensus 390 vTn 392 (461)
T PF05694_consen 390 VTN 392 (461)
T ss_dssp EE-
T ss_pred EEe
Confidence 885
No 479
>PRK13615 lipoprotein LpqB; Provisional
Probab=92.07 E-value=3.9 Score=47.40 Aligned_cols=62 Identities=8% Similarity=-0.023 Sum_probs=36.4
Q ss_pred CcccceEeccCCCeEEEEEeeccccCCCCcceEEEEECCCCceeecccCCCccccccccceEEecCCeEEEEE
Q 002209 189 AKLNFVTWSQDGKHLAFSIRIDAEDSSSSKLRVWVADVDTGKARPLFQSPDIYLNAIFDNFVWVNNSTLLVCT 261 (953)
Q Consensus 189 ~~~~~~~wSPDG~~laf~~~~~~~~~~~~~~~l~~~d~~~g~~~~lt~~~~~~~~~~~~~~~wspDg~~l~~~ 261 (953)
.....|+|.++| ++....+ ++ ...+.... .+|+...+.- +.. ....+..+..|+||.++++.
T Consensus 373 ~~Lt~PS~d~~g-~vWtv~~------g~-~~~l~~~~-~~G~~~~v~v-~~~-~~~~I~~lrvSrDG~R~Avi 434 (557)
T PRK13615 373 PGLVAPSLDAQG-YVWSTPA------SD-PRGLVAWG-PDGVGHPVAV-SWT-ATGRVVSLEVARDGARVLVQ 434 (557)
T ss_pred CccccCcCcCCC-CEEEEeC------CC-ceEEEEec-CCCceEEeec-ccc-CCCeeEEEEeCCCccEEEEE
Confidence 357889999999 6665432 11 23333332 3455544321 111 11237799999999988876
No 480
>TIGR02604 Piru_Ver_Nterm putative membrane-bound dehydrogenase domain. All proteins that score above the trusted cutoff score of 45 to this model are large proteins of either Pirellula sp. 1 or Verrucomicrobium spinosum. These proteins all contain, in addition to this domain, several hundred residues of highly variable sequence, and then a well-conserved C-terminal domain (TIGR02603) that features a putative cytochrome c-type heme binding motif CXXCH. The membrane-bound L-sorbosone dehydrogenase from Acetobacter liquefaciens (Gluconacetobacter liquefaciens) is homologous to this domain but lacks additional sequence regions shared by members of this family and belongs to a different clade of the larger family of homologs. It and its closely related homologs are excluded from the this model by scoring between the trusted (45) and noise (18) cutoffs.
Probab=91.97 E-value=4.2 Score=45.28 Aligned_cols=130 Identities=10% Similarity=0.068 Sum_probs=68.1
Q ss_pred eEEEEEc---CCc---eeEeCCC-CcccccccCCCCcEEEEEEecCCccccccCCCCCcceEEE-eccCc-----eEEEe
Q 002209 315 QLVLVSL---DGT---VKEIGPP-AVYTSLDPSPDEKYILISSIHRPYSFIVPCGRFPRQVGVW-TTDGI-----FVREL 381 (953)
Q Consensus 315 ~l~~~~~---~g~---~~~l~~~-~~~~~~~~SpDG~~l~~~~~~~~~~~~~~~~~~~~~i~~~-d~~g~-----~~~~l 381 (953)
+|++++- +|+ .+.+... .....+++.+|| |+++. . ..|+.+ +.++. +.+.|
T Consensus 48 rI~~l~d~dgdG~~d~~~vfa~~l~~p~Gi~~~~~G--lyV~~-~-------------~~i~~~~d~~gdg~ad~~~~~l 111 (367)
T TIGR02604 48 RILILEDADGDGKYDKSNVFAEELSMVTGLAVAVGG--VYVAT-P-------------PDILFLRDKDGDDKADGEREVL 111 (367)
T ss_pred EEEEEEcCCCCCCcceeEEeecCCCCccceeEecCC--EEEeC-C-------------CeEEEEeCCCCCCCCCCccEEE
Confidence 5666654 453 2344444 556788999999 44443 1 156655 44431 22223
Q ss_pred cc-CCCcccCCccccccccCccceeeccCCCCceEEEEeccCCC-------cccccccCCeEEEEecCCCCCCCceEEee
Q 002209 382 CD-LPLAEDIPIAFNSVRKGMRSINWRSDKPSTLYWAETQDGGD-------AKVEVTPRDIIYTQQAEPVQGEGPEILHK 453 (953)
Q Consensus 382 ~~-~~~~~~~p~~~~~~~~~~~~~~wspDg~~i~~~~~~~~~~~-------~~~~~~~~~~l~~~d~~~~~g~~~~~l~~ 453 (953)
.. .+.... ........+.|.|||+ |++..-...... ..........++.++. ++++.+.+..
T Consensus 112 ~~~~~~~~~------~~~~~~~~l~~gpDG~-LYv~~G~~~~~~~~~~~~~~~~~~~~~g~i~r~~p---dg~~~e~~a~ 181 (367)
T TIGR02604 112 LSGFGGQIN------NHHHSLNSLAWGPDGW-LYFNHGNTLASKVTRPGTSDESRQGLGGGLFRYNP---DGGKLRVVAH 181 (367)
T ss_pred EEccCCCCC------cccccccCceECCCCC-EEEecccCCCceeccCCCccCcccccCceEEEEec---CCCeEEEEec
Confidence 22 221100 0112345799999995 444321110000 0001122357888884 6666666666
Q ss_pred cccccCCeeeccCCceE
Q 002209 454 LDLRYGGISWCDDSLAL 470 (953)
Q Consensus 454 ~~~~~~~~~~SpDg~~l 470 (953)
+-.+...++|+++|+.+
T Consensus 182 G~rnp~Gl~~d~~G~l~ 198 (367)
T TIGR02604 182 GFQNPYGHSVDSWGDVF 198 (367)
T ss_pred CcCCCccceECCCCCEE
Confidence 65566789999998753
No 481
>PF13449 Phytase-like: Esterase-like activity of phytase
Probab=91.95 E-value=17 Score=39.66 Aligned_cols=67 Identities=13% Similarity=0.067 Sum_probs=37.7
Q ss_pred cceEeccCCCeEEEEEeeccccCCCCcceEEEEECCCCceeecc-cC---------CCccccccccceEEecCCeEEEEE
Q 002209 192 NFVTWSQDGKHLAFSIRIDAEDSSSSKLRVWVADVDTGKARPLF-QS---------PDIYLNAIFDNFVWVNNSTLLVCT 261 (953)
Q Consensus 192 ~~~~wSPDG~~laf~~~~~~~~~~~~~~~l~~~d~~~g~~~~lt-~~---------~~~~~~~~~~~~~wspDg~~l~~~ 261 (953)
...++.+||..++- .... ........|+.++.+|...+++. .. .....|..++.++++|||+.|++.
T Consensus 88 Egi~~~~~g~~~is-~E~~--~~~~~~p~I~~~~~~G~~~~~~~vP~~~~~~~~~~~~~~~N~G~E~la~~~dG~~l~~~ 164 (326)
T PF13449_consen 88 EGIAVPPDGSFWIS-SEGG--RTGGIPPRIRRFDLDGRVIRRFPVPAAFLPDANGTSGRRNNRGFEGLAVSPDGRTLFAA 164 (326)
T ss_pred hHeEEecCCCEEEE-eCCc--cCCCCCCEEEEECCCCcccceEccccccccccCccccccCCCCeEEEEECCCCCEEEEE
Confidence 34566667754333 2110 00111388999998854333331 11 112345568899999999977766
No 482
>KOG3914 consensus WD repeat protein WDR4 [Function unknown]
Probab=91.89 E-value=2.3 Score=45.46 Aligned_cols=39 Identities=8% Similarity=0.266 Sum_probs=24.2
Q ss_pred cceEEEEECCCCceeecccCCCccccccccceEEecCCeEEEEE
Q 002209 218 KLRVWVADVDTGKARPLFQSPDIYLNAIFDNFVWVNNSTLLVCT 261 (953)
Q Consensus 218 ~~~l~~~d~~~g~~~~lt~~~~~~~~~~~~~~~wspDg~~l~~~ 261 (953)
..++.++.+..+..+.+..+-. .+..++||||+++|.++
T Consensus 131 ~~~~di~s~~~~~~~~~lGhvS-----ml~dVavS~D~~~Iita 169 (390)
T KOG3914|consen 131 VYSFDILSADSGRCEPILGHVS-----MLLDVAVSPDDQFIITA 169 (390)
T ss_pred ceeeeeecccccCcchhhhhhh-----hhheeeecCCCCEEEEe
Confidence 3344455544455555543322 15689999999999876
No 483
>KOG0281 consensus Beta-TrCP (transducin repeats containing)/Slimb proteins [Function unknown]
Probab=91.84 E-value=2.7 Score=43.75 Aligned_cols=116 Identities=13% Similarity=0.096 Sum_probs=60.2
Q ss_pred eEEEEEc-CCceeEeCCC--CcccccccCCCCcEEEEEEecCCccccccCCCCCcceEEEeccCce-EEEeccCCCcccC
Q 002209 315 QLVLVSL-DGTVKEIGPP--AVYTSLDPSPDEKYILISSIHRPYSFIVPCGRFPRQVGVWTTDGIF-VRELCDLPLAEDI 390 (953)
Q Consensus 315 ~l~~~~~-~g~~~~l~~~--~~~~~~~~SpDG~~l~~~~~~~~~~~~~~~~~~~~~i~~~d~~g~~-~~~l~~~~~~~~~ 390 (953)
.|-+++. +++..+...+ .++.-..+ .|+.++..+.+. .|.+||+..+. .+.|..+.
T Consensus 341 TikvW~~st~efvRtl~gHkRGIAClQY--r~rlvVSGSSDn-------------tIRlwdi~~G~cLRvLeGHE----- 400 (499)
T KOG0281|consen 341 TIKVWSTSTCEFVRTLNGHKRGIACLQY--RDRLVVSGSSDN-------------TIRLWDIECGACLRVLEGHE----- 400 (499)
T ss_pred eEEEEeccceeeehhhhcccccceehhc--cCeEEEecCCCc-------------eEEEEeccccHHHHHHhchH-----
Confidence 4556666 6665444333 34433333 577776666444 89999998443 44443322
Q ss_pred CccccccccCccceeeccCCCCceEEEEeccCCCcccccccCCeEEEEecCCCCCCCceE---------EeecccccCCe
Q 002209 391 PIAFNSVRKGMRSINWRSDKPSTLYWAETQDGGDAKVEVTPRDIIYTQQAEPVQGEGPEI---------LHKLDLRYGGI 461 (953)
Q Consensus 391 p~~~~~~~~~~~~~~wspDg~~i~~~~~~~~~~~~~~~~~~~~~l~~~d~~~~~g~~~~~---------l~~~~~~~~~~ 461 (953)
.-++-+.| |.++|+-. ...+.|.+||+ .++-.++. +..+.+.+..+
T Consensus 401 --------eLvRciRF--d~krIVSG-------------aYDGkikvWdl--~aaldpra~~~~~Cl~~lv~hsgRVFrL 455 (499)
T KOG0281|consen 401 --------ELVRCIRF--DNKRIVSG-------------AYDGKIKVWDL--QAALDPRAPASTLCLRTLVEHSGRVFRL 455 (499)
T ss_pred --------Hhhhheee--cCceeeec-------------cccceEEEEec--ccccCCcccccchHHHhhhhccceeEEE
Confidence 22344455 34555543 23456777876 22333322 22344455555
Q ss_pred eeccCCceEEEEEecc
Q 002209 462 SWCDDSLALVYESWYK 477 (953)
Q Consensus 462 ~~SpDg~~l~~~~~~~ 477 (953)
.| |..+|+..+.++
T Consensus 456 QF--D~fqIvsssHdd 469 (499)
T KOG0281|consen 456 QF--DEFQIISSSHDD 469 (499)
T ss_pred ee--cceEEEeccCCC
Confidence 55 556666655444
No 484
>PRK13614 lipoprotein LpqB; Provisional
Probab=91.83 E-value=9.9 Score=44.38 Aligned_cols=148 Identities=11% Similarity=0.116 Sum_probs=76.7
Q ss_pred eEEEEEcCCceeEeCCCCcccccccCCCCcEEEEEEecCCccccccCCCCCcceEEEeccCc-eEEEeccCCCcccCCcc
Q 002209 315 QLVLVSLDGTVKEIGPPAVYTSLDPSPDEKYILISSIHRPYSFIVPCGRFPRQVGVWTTDGI-FVRELCDLPLAEDIPIA 393 (953)
Q Consensus 315 ~l~~~~~~g~~~~l~~~~~~~~~~~SpDG~~l~~~~~~~~~~~~~~~~~~~~~i~~~d~~g~-~~~~l~~~~~~~~~p~~ 393 (953)
.|+.....+..+.+......+.++|+++| ++-...... +..|..+.-++. +....... ...
T Consensus 366 ~l~~~~~g~~~~~~~~g~~Lt~PS~d~~g-~vWtv~~g~-----------~~~vv~~~~~g~~~~~~~~~~------~v~ 427 (573)
T PRK13614 366 TLYTVSPGQPARALTSGSTLTRPSFSPQD-WVWTAGPGG-----------NGRIVAYRPTGVAEGAQAPTV------TLT 427 (573)
T ss_pred EEEEecCCCcceeeecCCCccCCcccCCC-CEEEeeCCC-----------CceEEEEecCCCcccccccce------eec
Confidence 45555554455555555567889999998 665443211 113433333221 11000000 000
Q ss_pred cccccc-CccceeeccCCCCceEEEEeccCCCcccccccCCeEEEEecCCCCCCCceEEeec-----ccccCCeeeccCC
Q 002209 394 FNSVRK-GMRSINWRSDKPSTLYWAETQDGGDAKVEVTPRDIIYTQQAEPVQGEGPEILHKL-----DLRYGGISWCDDS 467 (953)
Q Consensus 394 ~~~~~~-~~~~~~wspDg~~i~~~~~~~~~~~~~~~~~~~~~l~~~d~~~~~g~~~~~l~~~-----~~~~~~~~~SpDg 467 (953)
.....+ .+..+..|+||-+++..++. +++.+|++.-+.....|.++.|+.. .....++.|..|+
T Consensus 428 ~~~l~g~~I~~lrvSrDG~R~Avi~~~----------~g~~~V~va~V~R~~~G~P~~L~~~~~~~~~~~~~sl~W~~~~ 497 (573)
T PRK13614 428 ADWLAGRTVKELRVSREGVRALVISEQ----------NGKSRVQVAGIVRNEDGTPRELTAPITLAADSDADTGAWVGDS 497 (573)
T ss_pred ccccCCCeeEEEEECCCccEEEEEEEe----------CCccEEEEEEEEeCCCCCeEEccCceecccCCCcceeEEcCCC
Confidence 011112 26789999999999988432 2233455433211234555555432 2456678999999
Q ss_pred ceEEEEEecccCceEEEEEcCCCC
Q 002209 468 LALVYESWYKTRRTRTWVISPGSK 491 (953)
Q Consensus 468 ~~l~~~~~~~~~~~~l~~~d~~~~ 491 (953)
..++.....+ .+...+.+.++++
T Consensus 498 sl~V~~~~~~-~~~~~~~v~v~~g 520 (573)
T PRK13614 498 TVVVTKASAT-SNVVPELLSVDAG 520 (573)
T ss_pred EEEEEeccCC-CcceEEEEEeCCC
Confidence 8766654322 3345677776543
No 485
>KOG3914 consensus WD repeat protein WDR4 [Function unknown]
Probab=91.80 E-value=1.9 Score=46.02 Aligned_cols=40 Identities=8% Similarity=-0.132 Sum_probs=27.0
Q ss_pred CCceEEeecccccCCeeeccCCceEEEEEecccCceEEEEEcCC
Q 002209 446 EGPEILHKLDLRYGGISWCDDSLALVYESWYKTRRTRTWVISPG 489 (953)
Q Consensus 446 ~~~~~l~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~l~~~d~~ 489 (953)
+..+.+..+-..+..++||||++.|.++..++ +|++....
T Consensus 142 ~~~~~~lGhvSml~dVavS~D~~~IitaDRDE----kIRvs~yp 181 (390)
T KOG3914|consen 142 GRCEPILGHVSMLLDVAVSPDDQFIITADRDE----KIRVSRYP 181 (390)
T ss_pred cCcchhhhhhhhhheeeecCCCCEEEEecCCc----eEEEEecC
Confidence 44455556666677899999999888875433 56665543
No 486
>TIGR02604 Piru_Ver_Nterm putative membrane-bound dehydrogenase domain. All proteins that score above the trusted cutoff score of 45 to this model are large proteins of either Pirellula sp. 1 or Verrucomicrobium spinosum. These proteins all contain, in addition to this domain, several hundred residues of highly variable sequence, and then a well-conserved C-terminal domain (TIGR02603) that features a putative cytochrome c-type heme binding motif CXXCH. The membrane-bound L-sorbosone dehydrogenase from Acetobacter liquefaciens (Gluconacetobacter liquefaciens) is homologous to this domain but lacks additional sequence regions shared by members of this family and belongs to a different clade of the larger family of homologs. It and its closely related homologs are excluded from the this model by scoring between the trusted (45) and noise (18) cutoffs.
Probab=91.73 E-value=6.9 Score=43.55 Aligned_cols=33 Identities=6% Similarity=-0.071 Sum_probs=25.4
Q ss_pred ceEEEEEc-CCceeEeCCC-CcccccccCCCCcEE
Q 002209 314 TQLVLVSL-DGTVKEIGPP-AVYTSLDPSPDEKYI 346 (953)
Q Consensus 314 ~~l~~~~~-~g~~~~l~~~-~~~~~~~~SpDG~~l 346 (953)
+.+++++. +++.+.+..+ .+...++|+|+|+.+
T Consensus 164 g~i~r~~pdg~~~e~~a~G~rnp~Gl~~d~~G~l~ 198 (367)
T TIGR02604 164 GGLFRYNPDGGKLRVVAHGFQNPYGHSVDSWGDVF 198 (367)
T ss_pred ceEEEEecCCCeEEEEecCcCCCccceECCCCCEE
Confidence 57899999 6667666665 666789999999764
No 487
>PLN03016 sinapoylglucose-malate O-sinapoyltransferase
Probab=91.61 E-value=0.74 Score=51.98 Aligned_cols=150 Identities=15% Similarity=0.086 Sum_probs=76.3
Q ss_pred EEEEEcCCCcEEEEEEEcCCCCCCCCCCCccEEEEeCCCCCcCcCCCCcccCCCCCCCCc---c--c---hHHHHHHHcC
Q 002209 641 LIKYQRKDGVQLSATLYLPPGYDPSKDGPLPCLFWSYPGEFKSKDAAGQVRGSPNEFPRI---G--S---TSVLLWLARG 712 (953)
Q Consensus 641 ~~~~~~~dg~~~~~~l~~P~~~~~~~~~~~P~vv~~hGg~~~~~~~~~~~~~~~~~~~~~---~--~---~~~~~la~~G 712 (953)
.+++....+..+..|++...+ ++. ..|+|+++-|||..+.-......-||-..... + . .....|.+.
T Consensus 41 y~~v~~~~~~~lfy~f~es~~-~~~---~~P~~lWlnGGPG~SS~~g~~~e~GP~~~~~~~~~~~~~~l~~n~~sW~~~- 115 (433)
T PLN03016 41 YIGIGEDENVQFFYYFIKSEN-NPK---EDPLLIWLNGGPGCSCLGGIIFENGPVGLKFEVFNGSAPSLFSTTYSWTKM- 115 (433)
T ss_pred EEEecCCCCeEEEEEEEecCC-Ccc---cCCEEEEEcCCCcHHHHHHHHHhcCCceeeccccCCCCCceeeCCCchhhc-
Confidence 344443345667777775432 222 37999999999876543222222233221100 0 0 001123433
Q ss_pred cEEEEcCCCCCCCCCChhhhhhh--HHHHHHHHHHHHHH-HHHcCCCCCCcEEEEEeChHHHHHHHHHHh----C-----
Q 002209 713 FAILGGPTTPIIGEGDEEANDRF--VEQLVACAEAAVEE-VVRRGVAHPSKIAVGGHSYGAFMTANLLAH----A----- 780 (953)
Q Consensus 713 ~~V~~~~~~~~~G~G~~~~~~~~--~~~~~~D~~~~~~~-l~~~~~~d~~~i~l~G~S~GG~~a~~~a~~----~----- 780 (953)
..++..|..-..|+......... -...++|+..++.. +...+.....++.|+|.||||..+-.+|.. .
T Consensus 116 anllfiDqPvGtGfSy~~~~~~~~~d~~~a~~~~~fl~~f~~~~p~~~~~~~yi~GESYaG~yvP~la~~i~~~n~~~~~ 195 (433)
T PLN03016 116 ANIIFLDQPVGSGFSYSKTPIDKTGDISEVKRTHEFLQKWLSRHPQYFSNPLYVVGDSYSGMIVPALVQEISQGNYICCE 195 (433)
T ss_pred CcEEEecCCCCCCccCCCCCCCccCCHHHHHHHHHHHHHHHHhChhhcCCCEEEEccCccceehHHHHHHHHhhcccccC
Confidence 33444343223344332211111 01223555555554 344454456789999999999876655542 1
Q ss_pred -CCcccEEEEcccCCC
Q 002209 781 -PHLFCCGIARSGAYN 795 (953)
Q Consensus 781 -p~~~~a~v~~~~~~d 795 (953)
+=.++++++..|..+
T Consensus 196 ~~inLkGi~iGNg~t~ 211 (433)
T PLN03016 196 PPINLQGYMLGNPVTY 211 (433)
T ss_pred CcccceeeEecCCCcC
Confidence 114788888888655
No 488
>PF11768 DUF3312: Protein of unknown function (DUF3312); InterPro: IPR024511 This is a eukaryotic family of uncharacterised proteins that contain WD40 repeats.
Probab=91.52 E-value=5.8 Score=44.91 Aligned_cols=142 Identities=10% Similarity=0.047 Sum_probs=83.0
Q ss_pred ceEEEEccCCCCCCceeeeecCCCCCcccceEeccCCCeEEEEEeeccccCCCCcceEEEEECCCCceeec--ccCCCcc
Q 002209 164 GIGIHQLFPDGKLGQEIEIQGFPDGAKLNFVTWSQDGKHLAFSIRIDAEDSSSSKLRVWVADVDTGKARPL--FQSPDIY 241 (953)
Q Consensus 164 ~i~i~~~~~~g~~~~~~~l~~~~~~~~~~~~~wSPDG~~laf~~~~~~~~~~~~~~~l~~~d~~~g~~~~l--t~~~~~~ 241 (953)
||.++.++. ++...|.............||-...+.+++....-...+.-..+..+++...++.+++ +..+
T Consensus 185 Nl~L~~~~~----~klEvL~yirTE~dPl~~~Fs~~~~~qi~tVE~s~s~~g~~~~d~ciYE~~r~klqrvsvtsip--- 257 (545)
T PF11768_consen 185 NLHLLSCSG----GKLEVLSYIRTENDPLDVEFSLNQPYQIHTVEQSISVKGEPSADSCIYECSRNKLQRVSVTSIP--- 257 (545)
T ss_pred cEEEEEecC----CcEEEEEEEEecCCcEEEEccCCCCcEEEEEEEecCCCCCceeEEEEEEeecCceeEEEEEEEe---
Confidence 788877743 3444444333333566778887444444444322011122234445566666655544 2222
Q ss_pred ccccccceEEecCCeEEEEEecCCCCCCCCCCCCCCCCceeecCCCccccchhhhhhcCCcchhhhhhhhccceEEEEEc
Q 002209 242 LNAIFDNFVWVNNSTLLVCTIPLLRGDPPKKPLVPLGPKMQSNEKRDIIQVRTFQDLLKDEYDEDLFDYYATTQLVLVSL 321 (953)
Q Consensus 242 ~~~~~~~~~wspDg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~l~~~~~ 321 (953)
+++.+..++++|+.++++... ..+.|.++|.
T Consensus 258 L~s~v~~ca~sp~E~kLvlGC-------------------------------------------------~DgSiiLyD~ 288 (545)
T PF11768_consen 258 LPSQVICCARSPSEDKLVLGC-------------------------------------------------EDGSIILYDT 288 (545)
T ss_pred cCCcceEEecCcccceEEEEe-------------------------------------------------cCCeEEEEEc
Confidence 222366889999999988772 2356778887
Q ss_pred -CCceeEeCCCCcccccccCCCCcEEEEEEecCCccccccCCCCCcceEEEecc
Q 002209 322 -DGTVKEIGPPAVYTSLDPSPDEKYILISSIHRPYSFIVPCGRFPRQVGVWTTD 374 (953)
Q Consensus 322 -~g~~~~l~~~~~~~~~~~SpDG~~l~~~~~~~~~~~~~~~~~~~~~i~~~d~~ 374 (953)
.+..+.....-....++|+|||..+++.+.. +++.+||+.
T Consensus 289 ~~~~t~~~ka~~~P~~iaWHp~gai~~V~s~q-------------GelQ~FD~A 329 (545)
T PF11768_consen 289 TRGVTLLAKAEFIPTLIAWHPDGAIFVVGSEQ-------------GELQCFDMA 329 (545)
T ss_pred CCCeeeeeeecccceEEEEcCCCcEEEEEcCC-------------ceEEEEEee
Confidence 4433322222445778999999988887743 389999987
No 489
>KOG1282 consensus Serine carboxypeptidases (lysosomal cathepsin A) [Posttranslational modification, protein turnover, chaperones; Amino acid transport and metabolism]
Probab=91.44 E-value=1.5 Score=49.23 Aligned_cols=150 Identities=14% Similarity=0.078 Sum_probs=81.7
Q ss_pred EEEEEcCCCcEEEEEEEcCCCCCCCCCCCccEEEEeCCCCCcCcCCCCcccCCCCCCCCccchH---HHHHHHcCcEEEE
Q 002209 641 LIKYQRKDGVQLSATLYLPPGYDPSKDGPLPCLFWSYPGEFKSKDAAGQVRGSPNEFPRIGSTS---VLLWLARGFAILG 717 (953)
Q Consensus 641 ~~~~~~~dg~~~~~~l~~P~~~~~~~~~~~P~vv~~hGg~~~~~~~~~~~~~~~~~~~~~~~~~---~~~la~~G~~V~~ 717 (953)
-+.+....+..+..|++.-.. .+. .-|+|||+-|||.++.-......-||-.....+... .-.|.+.. .++.
T Consensus 48 Yv~v~~~~~~~LFYwf~eS~~-~P~---~dPlvLWLnGGPGCSSl~G~~~E~GPf~v~~~G~tL~~N~ySWnk~a-NiLf 122 (454)
T KOG1282|consen 48 YVTVNESEGRQLFYWFFESEN-NPE---TDPLVLWLNGGPGCSSLGGLFEENGPFRVKYNGKTLYLNPYSWNKEA-NILF 122 (454)
T ss_pred eEECCCCCCceEEEEEEEccC-CCC---CCCEEEEeCCCCCccchhhhhhhcCCeEEcCCCCcceeCCccccccc-cEEE
Confidence 455655678889988886442 232 368999999999886544333333443332111100 00122221 2222
Q ss_pred cCCCCCCCCCChhhhhh---hHHHHHHHHHHH-HHHHHHcCCCCCCcEEEEEeChHHHHHHHHH----HhC-----C-Cc
Q 002209 718 GPTTPIIGEGDEEANDR---FVEQLVACAEAA-VEEVVRRGVAHPSKIAVGGHSYGAFMTANLL----AHA-----P-HL 783 (953)
Q Consensus 718 ~~~~~~~G~G~~~~~~~---~~~~~~~D~~~~-~~~l~~~~~~d~~~i~l~G~S~GG~~a~~~a----~~~-----p-~~ 783 (953)
.+..-..|+..+..... --.....|...+ .+|+.+.+....+.+.|.|-||+|..+-.+| ... | --
T Consensus 123 Ld~PvGvGFSYs~~~~~~~~~D~~~A~d~~~FL~~wf~kfPey~~~~fyI~GESYAG~YVP~La~~I~~~N~~~~~~~iN 202 (454)
T KOG1282|consen 123 LDQPVGVGFSYSNTSSDYKTGDDGTAKDNYEFLQKWFEKFPEYKSNDFYIAGESYAGHYVPALAQEILKGNKKCCKPNIN 202 (454)
T ss_pred EecCCcCCccccCCCCcCcCCcHHHHHHHHHHHHHHHHhChhhcCCCeEEecccccceehHHHHHHHHhccccccCCccc
Confidence 22222234333221111 112334555554 4567777777778999999999995554443 332 1 24
Q ss_pred ccEEEEcccCCC
Q 002209 784 FCCGIARSGAYN 795 (953)
Q Consensus 784 ~~a~v~~~~~~d 795 (953)
+|+.++..|+.|
T Consensus 203 LkG~~IGNg~td 214 (454)
T KOG1282|consen 203 LKGYAIGNGLTD 214 (454)
T ss_pred ceEEEecCcccC
Confidence 899999888766
No 490
>KOG0270 consensus WD40 repeat-containing protein [Function unknown]
Probab=91.42 E-value=20 Score=39.15 Aligned_cols=138 Identities=15% Similarity=0.181 Sum_probs=84.3
Q ss_pred ceEEEEEc-CCceeEeCCC--CcccccccCCCCcEEEEEEecCCccccccCCCCCcceEEEeccC--ceEEEeccCCCcc
Q 002209 314 TQLVLVSL-DGTVKEIGPP--AVYTSLDPSPDEKYILISSIHRPYSFIVPCGRFPRQVGVWTTDG--IFVRELCDLPLAE 388 (953)
Q Consensus 314 ~~l~~~~~-~g~~~~l~~~--~~~~~~~~SpDG~~l~~~~~~~~~~~~~~~~~~~~~i~~~d~~g--~~~~~l~~~~~~~ 388 (953)
..+.++|+ +|++...... +.+..+.|.|---.++.+.. +.+.+.+.|... ...+..
T Consensus 266 ~TV~lWD~~~g~p~~s~~~~~k~Vq~l~wh~~~p~~LLsGs------------~D~~V~l~D~R~~~~s~~~w------- 326 (463)
T KOG0270|consen 266 KTVKLWDVDTGKPKSSITHHGKKVQTLEWHPYEPSVLLSGS------------YDGTVALKDCRDPSNSGKEW------- 326 (463)
T ss_pred ceEEEEEcCCCCcceehhhcCCceeEEEecCCCceEEEecc------------ccceEEeeeccCccccCceE-------
Confidence 45667888 8877766653 88899999996665555541 234677776651 000000
Q ss_pred cCCccccccccCccceeeccCCCCceEEEEeccCCCcccccccCCeEEEEecCCCCCCCceEEeecccccCCeeeccCCc
Q 002209 389 DIPIAFNSVRKGMRSINWRSDKPSTLYWAETQDGGDAKVEVTPRDIIYTQQAEPVQGEGPEILHKLDLRYGGISWCDDSL 468 (953)
Q Consensus 389 ~~p~~~~~~~~~~~~~~wspDg~~i~~~~~~~~~~~~~~~~~~~~~l~~~d~~~~~g~~~~~l~~~~~~~~~~~~SpDg~ 468 (953)
...+.+..++|.|......+. . ...+.|+-+|+ ...+.....+..++..++++.++..-.
T Consensus 327 -------k~~g~VEkv~w~~~se~~f~~-~-----------tddG~v~~~D~-R~~~~~vwt~~AHd~~ISgl~~n~~~p 386 (463)
T KOG0270|consen 327 -------KFDGEVEKVAWDPHSENSFFV-S-----------TDDGTVYYFDI-RNPGKPVWTLKAHDDEISGLSVNIQTP 386 (463)
T ss_pred -------EeccceEEEEecCCCceeEEE-e-----------cCCceEEeeec-CCCCCceeEEEeccCCcceEEecCCCC
Confidence 011234567787777654444 1 23457888886 223333455678888899999988877
Q ss_pred eEEEEEecccCceEEEEEcCCCC
Q 002209 469 ALVYESWYKTRRTRTWVISPGSK 491 (953)
Q Consensus 469 ~l~~~~~~~~~~~~l~~~d~~~~ 491 (953)
.++.+...+ ....||.++.+.+
T Consensus 387 ~~l~t~s~d-~~Vklw~~~~~~~ 408 (463)
T KOG0270|consen 387 GLLSTASTD-KVVKLWKFDVDSP 408 (463)
T ss_pred cceeecccc-ceEEEEeecCCCC
Confidence 766554333 2247888876654
No 491
>KOG0321 consensus WD40 repeat-containing protein L2DTL [Function unknown]
Probab=91.16 E-value=7 Score=44.43 Aligned_cols=117 Identities=12% Similarity=0.141 Sum_probs=62.1
Q ss_pred cccccccCCCCcEEEEEEecCCccccccCCCCCcceEEEeccCceEEEeccCCCcccCCccccccccCccceeeccCCCC
Q 002209 333 VYTSLDPSPDEKYILISSIHRPYSFIVPCGRFPRQVGVWTTDGIFVRELCDLPLAEDIPIAFNSVRKGMRSINWRSDKPS 412 (953)
Q Consensus 333 ~~~~~~~SpDG~~l~~~~~~~~~~~~~~~~~~~~~i~~~d~~g~~~~~l~~~~~~~~~p~~~~~~~~~~~~~~wspDg~~ 412 (953)
++.++....-|.+|.....++ .||.|++.+-....+....+....-+ ...-..|||+..
T Consensus 273 G~~nL~lDssGt~L~AsCtD~-------------sIy~ynm~s~s~sP~~~~sg~~~~sf--------~vks~lSpd~~~ 331 (720)
T KOG0321|consen 273 GQVNLILDSSGTYLFASCTDN-------------SIYFYNMRSLSISPVAEFSGKLNSSF--------YVKSELSPDDCS 331 (720)
T ss_pred eeEEEEecCCCCeEEEEecCC-------------cEEEEeccccCcCchhhccCccccee--------eeeeecCCCCce
Confidence 345566666678888777554 89999997544443332221110000 011236888886
Q ss_pred ceEEEEeccCCCcccccccCCeEEEEecCCCCCCCceEEeecccccCCeeeccC--CceEEEEEecccCceEEEEEc
Q 002209 413 TLYWAETQDGGDAKVEVTPRDIIYTQQAEPVQGEGPEILHKLDLRYGGISWCDD--SLALVYESWYKTRRTRTWVIS 487 (953)
Q Consensus 413 i~~~~~~~~~~~~~~~~~~~~~l~~~d~~~~~g~~~~~l~~~~~~~~~~~~SpD--g~~l~~~~~~~~~~~~l~~~d 487 (953)
++-. +...+.|.|.+.. --..+..+..+...+..+.|+|. +..+.. +.+. ...+|.+.
T Consensus 332 l~Sg-------------Ssd~~ayiw~vs~-~e~~~~~l~Ght~eVt~V~w~pS~~t~v~Tc-SdD~--~~kiW~l~ 391 (720)
T KOG0321|consen 332 LLSG-------------SSDEQAYIWVVSS-PEAPPALLLGHTREVTTVRWLPSATTPVATC-SDDF--RVKIWRLS 391 (720)
T ss_pred Eecc-------------CCCcceeeeeecC-ccCChhhhhCcceEEEEEeeccccCCCceee-ccCc--ceEEEecc
Confidence 6544 3344556655400 11223345666667778888764 444433 3322 23677763
No 492
>smart00824 PKS_TE Thioesterase. Peptide synthetases are involved in the non-ribosomal synthesis of peptide antibiotics. Next to the operons encoding these enzymes, in almost all cases, are genes that encode proteins that have similarity to the type II fatty acid thioesterases of vertebrates. There are also modules within the peptide synthetases that also share this similarity. With respect to antibiotic production, thioesterases are required for the addition of the last amino acid to the peptide antibiotic, thereby forming a cyclic antibiotic. Thioesterases (non-integrated) have molecular masses of 25-29 kDa.
Probab=90.83 E-value=2.1 Score=42.98 Aligned_cols=34 Identities=15% Similarity=0.125 Sum_probs=25.6
Q ss_pred CCcEEEEEeChHHHHHHHHHHh---CCCcccEEEEcc
Q 002209 758 PSKIAVGGHSYGAFMTANLLAH---APHLFCCGIARS 791 (953)
Q Consensus 758 ~~~i~l~G~S~GG~~a~~~a~~---~p~~~~a~v~~~ 791 (953)
..++.++|||+||.++..++.+ .+..+..++...
T Consensus 63 ~~~~~l~g~s~Gg~~a~~~a~~l~~~~~~~~~l~~~~ 99 (212)
T smart00824 63 GRPFVLVGHSSGGLLAHAVAARLEARGIPPAAVVLLD 99 (212)
T ss_pred CCCeEEEEECHHHHHHHHHHHHHHhCCCCCcEEEEEc
Confidence 3578999999999999888875 334566666554
No 493
>PRK13615 lipoprotein LpqB; Provisional
Probab=90.77 E-value=18 Score=42.09 Aligned_cols=134 Identities=10% Similarity=0.021 Sum_probs=72.8
Q ss_pred CCceeEeCCCCcccccccCCCCcEEEEEEecCCccccccCCCCCcceEEEecc-CceEEEeccCCCcccCCccccccccC
Q 002209 322 DGTVKEIGPPAVYTSLDPSPDEKYILISSIHRPYSFIVPCGRFPRQVGVWTTD-GIFVRELCDLPLAEDIPIAFNSVRKG 400 (953)
Q Consensus 322 ~g~~~~l~~~~~~~~~~~SpDG~~l~~~~~~~~~~~~~~~~~~~~~i~~~d~~-g~~~~~l~~~~~~~~~p~~~~~~~~~ 400 (953)
.+..+.+......+.++|+++| ++-...... ...+.... .++...+.. +.. ....
T Consensus 363 ~~~~~~~~~~~~Lt~PS~d~~g-~vWtv~~g~-------------~~~l~~~~~~G~~~~v~v-~~~---------~~~~ 418 (557)
T PRK13615 363 DRDAVLLDTRPGLVAPSLDAQG-YVWSTPASD-------------PRGLVAWGPDGVGHPVAV-SWT---------ATGR 418 (557)
T ss_pred CCcceeeccCCccccCcCcCCC-CEEEEeCCC-------------ceEEEEecCCCceEEeec-ccc---------CCCe
Confidence 4455555444567889999998 665443211 11222221 123222211 111 1123
Q ss_pred ccceeeccCCCCceEEEEeccCCCcccccccCCeEEEEecCCCCCCCceEE-ee------cccccCCeeeccCCceEEEE
Q 002209 401 MRSINWRSDKPSTLYWAETQDGGDAKVEVTPRDIIYTQQAEPVQGEGPEIL-HK------LDLRYGGISWCDDSLALVYE 473 (953)
Q Consensus 401 ~~~~~wspDg~~i~~~~~~~~~~~~~~~~~~~~~l~~~d~~~~~g~~~~~l-~~------~~~~~~~~~~SpDg~~l~~~ 473 (953)
+..+..|+||-+++..++. .+..+|++.-+.. +++.++.| +. ......++.|..|++.++..
T Consensus 419 I~~lrvSrDG~R~Avi~~~----------~g~~~V~va~V~R-~~~~P~~L~~~p~~l~~~l~~v~sl~W~~~~~laVl~ 487 (557)
T PRK13615 419 VVSLEVARDGARVLVQLET----------GAGPQLLVASIVR-DGGVPTSLTTTPLELLASPGTPLDATWVDELDVATLT 487 (557)
T ss_pred eEEEEeCCCccEEEEEEec----------CCCCEEEEEEEEe-CCCcceEeeeccEEcccCcCcceeeEEcCCCEEEEEe
Confidence 5679999999999998543 2234565543312 34444445 32 23355678999999865655
Q ss_pred EecccCceEEEEEcCCCC
Q 002209 474 SWYKTRRTRTWVISPGSK 491 (953)
Q Consensus 474 ~~~~~~~~~l~~~d~~~~ 491 (953)
...+ .+..++++.+++.
T Consensus 488 ~~~~-~~~~v~~v~v~g~ 504 (557)
T PRK13615 488 LAPD-GERQVELHQVGGP 504 (557)
T ss_pred ccCC-CCceEEEEECCCc
Confidence 3222 3346788888764
No 494
>PF03088 Str_synth: Strictosidine synthase; InterPro: IPR018119 This entry represents a conserved region found in strictosidine synthase (4.3.3.2 from EC), a key enzyme in alkaloid biosynthesis. It catalyses the Pictet-Spengler stereospecific condensation of tryptamine with secologanin to form strictosidine []. The structure of the native enzyme from the Indian medicinal plant Rauvolfia serpentina (Serpentwood) (Devilpepper) represents the first example of a six-bladed four-stranded beta-propeller fold from the plant kingdom [].; GO: 0016844 strictosidine synthase activity, 0009058 biosynthetic process; PDB: 2FPB_A 2V91_B 2FP8_A 3V1S_B 2FPC_A 2VAQ_A 2FP9_B.
Probab=90.46 E-value=0.76 Score=38.75 Aligned_cols=40 Identities=18% Similarity=0.219 Sum_probs=32.5
Q ss_pred ccceEEEEEc-CCceeEeCCC-CcccccccCCCCcEEEEEEe
Q 002209 312 ATTQLVLVSL-DGTVKEIGPP-AVYTSLDPSPDEKYILISSI 351 (953)
Q Consensus 312 ~~~~l~~~~~-~g~~~~l~~~-~~~~~~~~SpDG~~l~~~~~ 351 (953)
..++|+.+|. +++.+.+..+ .....+++|||++.|+++..
T Consensus 35 ~~GRll~ydp~t~~~~vl~~~L~fpNGVals~d~~~vlv~Et 76 (89)
T PF03088_consen 35 PTGRLLRYDPSTKETTVLLDGLYFPNGVALSPDESFVLVAET 76 (89)
T ss_dssp --EEEEEEETTTTEEEEEEEEESSEEEEEE-TTSSEEEEEEG
T ss_pred CCcCEEEEECCCCeEEEehhCCCccCeEEEcCCCCEEEEEec
Confidence 5689999999 8888888777 77889999999999998863
No 495
>COG4287 PqaA PhoPQ-activated pathogenicity-related protein [General function prediction only]
Probab=90.45 E-value=0.24 Score=51.93 Aligned_cols=133 Identities=16% Similarity=0.195 Sum_probs=80.3
Q ss_pred HHHHHHHHHHHHHc-CCCCCCcEEEEEeChHHHHHHHHHHhCCCcccEEEEcc-cCCCCC------CCCcC---------
Q 002209 740 VACAEAAVEEVVRR-GVAHPSKIAVGGHSYGAFMTANLLAHAPHLFCCGIARS-GAYNRT------LTPFG--------- 802 (953)
Q Consensus 740 ~~D~~~~~~~l~~~-~~~d~~~i~l~G~S~GG~~a~~~a~~~p~~~~a~v~~~-~~~d~~------~~~~~--------- 802 (953)
+.-+..|++...+. ..+.-++..|.|.|--|+.+...|..+|. +.|+|..+ -..+.. +..++
T Consensus 214 v~a~srAMdlAq~eL~q~~Ik~F~VTGaSKRgWttwLTAIaDpr-v~aIvp~v~D~Lni~a~L~hiyrsYGgnwpi~l~p 292 (507)
T COG4287 214 VYAVSRAMDLAQDELEQVEIKGFMVTGASKRGWTTWLTAIADPR-VFAIVPFVYDNLNIEAQLLHIYRSYGGNWPIKLAP 292 (507)
T ss_pred HHHHHHHHHHHHhhhhheeeeeEEEeccccchHHHHHHHhcCcc-hhhhhhhHHhhcccHHHHHHHHHhhCCCCCcccch
Confidence 34444455444332 33445689999999999999999999975 55544432 111110 00011
Q ss_pred ccccc-chhhhh---HHHHHhcCccccc-----CCCCCcEEEEEeCCCCCCCCchHHHHHHHHHHHhCCCcEEEEEeCCC
Q 002209 803 FQNED-RTLWEA---TSTYVEMSPFMSA-----NKLKKPILLVHGEEDNNSGTLTMQSDRFFNALKGHGALCRLVILPFE 873 (953)
Q Consensus 803 ~~~~~-~~~~~~---~~~~~~~sp~~~~-----~~i~~P~Li~~G~~D~~v~~~~~~~~~~~~~l~~~g~~~~~~~~~~~ 873 (953)
|..+. ...-+. .....-.+|+.+. .++..|-+|+.+..|...+ ++.+.-+|..|... +-+...|++
T Consensus 293 yyaegi~erl~tp~fkqL~~IiDPlay~~try~~RLalpKyivnaSgDdff~--pDsa~lYyd~LPG~---kaLrmvPN~ 367 (507)
T COG4287 293 YYAEGIDERLETPLFKQLLEIIDPLAYRNTRYQLRLALPKYIVNASGDDFFV--PDSANLYYDDLPGE---KALRMVPND 367 (507)
T ss_pred hHhhhHHHhhcCHHHHHHHHhhcHHHHhhhhhhhhccccceeecccCCcccC--CCccceeeccCCCc---eeeeeCCCC
Confidence 00000 000001 1112223565554 6778899999999999887 88888888888654 568889999
Q ss_pred CccCC
Q 002209 874 SHGYA 878 (953)
Q Consensus 874 ~H~~~ 878 (953)
.|...
T Consensus 368 ~H~~~ 372 (507)
T COG4287 368 PHNLI 372 (507)
T ss_pred cchhh
Confidence 99874
No 496
>KOG0300 consensus WD40 repeat-containing protein [Function unknown]
Probab=90.10 E-value=7.9 Score=39.94 Aligned_cols=29 Identities=7% Similarity=0.018 Sum_probs=22.8
Q ss_pred CCCCCceecCCCCEEEEEecCCCCCcccc
Q 002209 109 PPLPALSFSPQRDKILFLKRRALPPLEEL 137 (953)
Q Consensus 109 ~~~~~~~~SPDG~~la~~~~~~~~~~~~~ 137 (953)
..+..+.|+|.|..++..+.+....++.+
T Consensus 191 GSVNsikfh~s~~L~lTaSGD~taHIW~~ 219 (481)
T KOG0300|consen 191 GSVNSIKFHNSGLLLLTASGDETAHIWKA 219 (481)
T ss_pred cceeeEEeccccceEEEccCCcchHHHHH
Confidence 35778999999999998888766666653
No 497
>PF07995 GSDH: Glucose / Sorbosone dehydrogenase; InterPro: IPR012938 Proteins containing this domain are thought to be glucose/sorbosone dehydrogenases. The best characterised of these proteins is soluble glucose dehydrogenase (P13650 from SWISSPROT) from Acinetobacter calcoaceticus, which oxidises glucose to gluconolactone. The enzyme is a calcium-dependent homodimer which uses PQQ as a cofactor [].; GO: 0016901 oxidoreductase activity, acting on the CH-OH group of donors, quinone or similar compound as acceptor, 0048038 quinone binding, 0005975 carbohydrate metabolic process; PDB: 2ISM_A 2WG3_D 3HO5_A 3HO4_A 3HO3_A 2WFT_A 2WG4_B 2WFX_B 1CRU_A 1CQ1_B ....
Probab=89.98 E-value=7.2 Score=42.62 Aligned_cols=80 Identities=16% Similarity=0.069 Sum_probs=41.1
Q ss_pred cceeeccCCCCceEEEEeccCCC---cccccccCCeEEEEecCCCCCC-------------CceEEeecccccCCeeecc
Q 002209 402 RSINWRSDKPSTLYWAETQDGGD---AKVEVTPRDIIYTQQAEPVQGE-------------GPEILHKLDLRYGGISWCD 465 (953)
Q Consensus 402 ~~~~wspDg~~i~~~~~~~~~~~---~~~~~~~~~~l~~~d~~~~~g~-------------~~~~l~~~~~~~~~~~~Sp 465 (953)
..++|.||| .|++.+ .+..+ ..........|+.++. +|. ..+.+..+-.+...++|.|
T Consensus 117 ~~l~fgpDG-~LYvs~--G~~~~~~~~~~~~~~~G~ilri~~---dG~~p~dnP~~~~~~~~~~i~A~GlRN~~~~~~d~ 190 (331)
T PF07995_consen 117 GGLAFGPDG-KLYVSV--GDGGNDDNAQDPNSLRGKILRIDP---DGSIPADNPFVGDDGADSEIYAYGLRNPFGLAFDP 190 (331)
T ss_dssp EEEEE-TTS-EEEEEE--B-TTTGGGGCSTTSSTTEEEEEET---TSSB-TTSTTTTSTTSTTTEEEE--SEEEEEEEET
T ss_pred ccccCCCCC-cEEEEe--CCCCCcccccccccccceEEEecc---cCcCCCCCccccCCCceEEEEEeCCCccccEEEEC
Confidence 469999999 344332 22221 1112234568888885 433 3445555666667789999
Q ss_pred CCceEEEEEecccCceEEEEEc
Q 002209 466 DSLALVYESWYKTRRTRTWVIS 487 (953)
Q Consensus 466 Dg~~l~~~~~~~~~~~~l~~~d 487 (953)
....|+...+......+|.++.
T Consensus 191 ~tg~l~~~d~G~~~~dein~i~ 212 (331)
T PF07995_consen 191 NTGRLWAADNGPDGWDEINRIE 212 (331)
T ss_dssp TTTEEEEEEE-SSSSEEEEEE-
T ss_pred CCCcEEEEccCCCCCcEEEEec
Confidence 8444555544333334566654
No 498
>PF02450 LCAT: Lecithin:cholesterol acyltransferase; InterPro: IPR003386 Lecithin:cholesterol acyltransferase (LACT), also known as phosphatidylcholine-sterol acyltransferase (2.3.1.43 from EC), is involved in extracellular metabolism of plasma lipoproteins, including cholesterol. It esterifies the free cholesterol transported in plasma lipoproteins, and is activated by apolipoprotein A-I. Defects in LACT cause Norum and Fish eye diseases. This family also includes phospholipid:diacylglycerol acyltransferase (PDAT)(2.3.1.158 from EC), which is involved in triacylglycerol formation by an acyl-CoA independent pathway. The enzyme specifically transfers acyl groups from the sn-2 position of a phospholipid to diacylglycerol, thus forming an sn-1-lysophospholipid [].; GO: 0008374 O-acyltransferase activity, 0006629 lipid metabolic process
Probab=89.91 E-value=0.63 Score=52.07 Aligned_cols=83 Identities=13% Similarity=0.166 Sum_probs=52.5
Q ss_pred hHHHHHHHcCcEE----EEcCCCCCCCCCChhhhhhhHHHHHHHHHHHHHHHHHcCCCCCCcEEEEEeChHHHHHHHHHH
Q 002209 703 TSVLLWLARGFAI----LGGPTTPIIGEGDEEANDRFVEQLVACAEAAVEEVVRRGVAHPSKIAVGGHSYGAFMTANLLA 778 (953)
Q Consensus 703 ~~~~~la~~G~~V----~~~~~~~~~G~G~~~~~~~~~~~~~~D~~~~~~~l~~~~~~d~~~i~l~G~S~GG~~a~~~a~ 778 (953)
.....|.+.||.. +..+| |.+ .... .....+..+...|+.+.+.. ..++.|+||||||.++..++.
T Consensus 69 ~li~~L~~~GY~~~~~l~~~pY-DWR-----~~~~-~~~~~~~~lk~~ie~~~~~~---~~kv~li~HSmGgl~~~~fl~ 138 (389)
T PF02450_consen 69 KLIENLEKLGYDRGKDLFAAPY-DWR-----LSPA-ERDEYFTKLKQLIEEAYKKN---GKKVVLIAHSMGGLVARYFLQ 138 (389)
T ss_pred HHHHHHHhcCcccCCEEEEEee-chh-----hchh-hHHHHHHHHHHHHHHHHHhc---CCcEEEEEeCCCchHHHHHHH
Confidence 4566788877765 33222 221 1111 12334455556666554432 479999999999999999888
Q ss_pred hCCC------cccEEEEcccCCC
Q 002209 779 HAPH------LFCCGIARSGAYN 795 (953)
Q Consensus 779 ~~p~------~~~a~v~~~~~~d 795 (953)
..+. .++..|.+++.+.
T Consensus 139 ~~~~~~W~~~~i~~~i~i~~p~~ 161 (389)
T PF02450_consen 139 WMPQEEWKDKYIKRFISIGTPFG 161 (389)
T ss_pred hccchhhHHhhhhEEEEeCCCCC
Confidence 7643 4888999887643
No 499
>KOG3724 consensus Negative regulator of COPII vesicle formation [Intracellular trafficking, secretion, and vesicular transport]
Probab=89.40 E-value=1.6 Score=50.95 Aligned_cols=45 Identities=16% Similarity=0.220 Sum_probs=31.2
Q ss_pred HHHHHHHHHHHHHHHHHcC----CCC---CCcEEEEEeChHHHHHHHHHHhC
Q 002209 736 VEQLVACAEAAVEEVVRRG----VAH---PSKIAVGGHSYGAFMTANLLAHA 780 (953)
Q Consensus 736 ~~~~~~D~~~~~~~l~~~~----~~d---~~~i~l~G~S~GG~~a~~~a~~~ 780 (953)
...-.+-+.+|+.++.+++ .-+ |..|+++||||||.+|..++...
T Consensus 152 l~dQtEYV~dAIk~ILslYr~~~e~~~p~P~sVILVGHSMGGiVAra~~tlk 203 (973)
T KOG3724|consen 152 LLDQTEYVNDAIKYILSLYRGEREYASPLPHSVILVGHSMGGIVARATLTLK 203 (973)
T ss_pred HHHHHHHHHHHHHHHHHHhhcccccCCCCCceEEEEeccchhHHHHHHHhhh
Confidence 3444555666777776542 223 56799999999999998877653
No 500
>PLN02454 triacylglycerol lipase
Probab=89.26 E-value=0.75 Score=50.56 Aligned_cols=42 Identities=21% Similarity=0.197 Sum_probs=30.3
Q ss_pred HHHHHHHHHHHHHHHcCCCCCCcEEEEEeChHHHHHHHHHHh
Q 002209 738 QLVACAEAAVEEVVRRGVAHPSKIAVGGHSYGAFMTANLLAH 779 (953)
Q Consensus 738 ~~~~D~~~~~~~l~~~~~~d~~~i~l~G~S~GG~~a~~~a~~ 779 (953)
...+++...++.+.+.+.-..-+|.++|||+||.+|+.+|..
T Consensus 207 S~r~qvl~~V~~l~~~Yp~~~~sI~vTGHSLGGALAtLaA~d 248 (414)
T PLN02454 207 SARSQLLAKIKELLERYKDEKLSIVLTGHSLGASLATLAAFD 248 (414)
T ss_pred HHHHHHHHHHHHHHHhCCCCCceEEEEecCHHHHHHHHHHHH
Confidence 455666677777776642222259999999999999988854
Done!