Query 002210
Match_columns 953
No_of_seqs 694 out of 5030
Neff 8.3
Searched_HMMs 29240
Date Mon Mar 25 17:05:54 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/002210.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/002210hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4eho_A Bacteriophytochrome, PA 100.0 5E-116 2E-120 1060.3 42.3 606 66-731 20-635 (635)
2 3zq5_A Phytochrome-like protei 100.0 1E-111 4E-116 973.2 40.5 483 67-580 16-509 (520)
3 3nhq_A Bacteriophytochrome; ph 100.0 3E-109 1E-113 951.7 47.2 469 67-578 13-492 (505)
4 3s7o_A Bacteriophytochrome; bi 100.0 3.7E-81 1.3E-85 676.9 30.8 295 66-397 38-337 (343)
5 4e04_A Bacteriophytochrome (li 100.0 1E-80 3.4E-85 673.0 33.5 296 67-393 16-315 (327)
6 2ool_A Sensor protein; bacteri 100.0 1.1E-77 3.9E-82 658.2 36.2 296 68-394 30-329 (337)
7 4glq_A Methyl-accepting chemot 100.0 1.5E-34 5.3E-39 290.6 15.9 152 205-393 3-155 (171)
8 2k2n_A Sensor protein, SYB-CPH 100.0 3E-28 1E-32 245.3 17.1 164 216-392 1-167 (172)
9 2lb5_A Sensor histidine kinase 99.9 4.9E-27 1.7E-31 244.0 17.6 182 196-392 13-197 (208)
10 3ewk_A Sensor protein; PAS dom 99.9 2.4E-25 8.3E-30 234.4 28.6 221 623-863 1-227 (227)
11 4f3l_A Mclock, circadian locom 99.8 3.6E-18 1.2E-22 192.5 21.1 236 613-871 88-360 (361)
12 4f3l_B BMAL1B; BHLH, PAS, circ 99.8 8.4E-18 2.9E-22 191.0 20.7 233 614-868 89-385 (387)
13 3a0r_A Sensor protein; four he 99.7 2.7E-17 9.3E-22 184.1 7.4 190 734-946 3-195 (349)
14 3mr0_A Sensory box histidine k 99.7 9.3E-16 3.2E-20 148.1 16.4 138 604-743 2-141 (142)
15 3p7n_A Sensor histidine kinase 99.6 1.3E-15 4.5E-20 162.9 15.9 175 724-912 48-239 (258)
16 3mr0_A Sensory box histidine k 99.6 3.4E-15 1.2E-19 144.1 15.0 135 732-880 2-138 (142)
17 3rty_A Period circadian protei 99.6 1.5E-14 5.1E-19 160.0 18.2 220 623-866 5-263 (339)
18 2gj3_A Nitrogen fixation regul 99.6 9.7E-15 3.3E-19 136.2 12.3 117 738-868 4-120 (120)
19 2pr5_A Blue-light photorecepto 99.6 3.3E-14 1.1E-18 135.0 15.8 126 615-744 3-131 (132)
20 2pr5_A Blue-light photorecepto 99.6 5.2E-14 1.8E-18 133.6 16.1 122 743-880 3-127 (132)
21 4hia_A LOV protein; PAS, HTH, 99.6 1.1E-14 3.8E-19 145.3 11.4 163 609-776 5-171 (176)
22 2gj3_A Nitrogen fixation regul 99.6 4.2E-14 1.4E-18 131.8 14.4 117 610-728 4-120 (120)
23 3p7n_A Sensor histidine kinase 99.5 1.4E-14 4.7E-19 155.0 11.5 174 603-785 55-233 (258)
24 3k3c_A Protein RV1364C/MT1410; 99.5 5E-14 1.7E-18 137.7 14.6 138 609-749 15-157 (158)
25 3f1p_B ARYL hydrocarbon recept 99.5 2.2E-14 7.5E-19 133.7 10.9 115 741-869 4-120 (121)
26 3ue6_A Aureochrome1; PAS/LOV d 99.5 2.8E-14 9.6E-19 140.1 11.8 135 725-873 21-158 (166)
27 4hia_A LOV protein; PAS, HTH, 99.5 9.2E-14 3.1E-18 138.6 15.6 122 738-873 6-130 (176)
28 3f1p_B ARYL hydrocarbon recept 99.5 6.7E-14 2.3E-18 130.4 12.3 114 614-729 5-120 (121)
29 1d06_A Nitrogen fixation regul 99.5 2E-13 7E-18 129.0 15.0 125 725-865 2-130 (130)
30 3nja_A Probable ggdef family p 99.5 9.7E-14 3.3E-18 128.4 11.7 122 734-869 2-125 (125)
31 3ue6_A Aureochrome1; PAS/LOV d 99.5 1E-13 3.5E-18 136.1 11.6 126 606-733 30-158 (166)
32 3nja_A Probable ggdef family p 99.5 2.3E-13 7.9E-18 125.8 12.6 122 606-729 2-125 (125)
33 3t50_A Blue-light-activated hi 99.5 2.1E-13 7E-18 127.6 12.3 123 616-740 2-127 (128)
34 3kx0_X Uncharacterized protein 99.5 8.9E-14 3E-18 140.7 10.2 140 608-749 34-181 (185)
35 3f1p_A Endothelial PAS domain- 99.5 8.7E-14 3E-18 128.6 8.9 105 754-869 11-116 (117)
36 4dj3_A Period circadian protei 99.5 5.4E-13 1.8E-17 146.0 15.5 222 616-863 31-278 (317)
37 3bwl_A Sensor protein; structu 99.4 7.5E-13 2.5E-17 123.8 13.9 124 723-865 1-126 (126)
38 3t50_A Blue-light-activated hi 99.4 6.2E-13 2.1E-17 124.3 13.4 117 744-874 2-121 (128)
39 3mxq_A Sensor protein; PSI2, M 99.4 4.7E-13 1.6E-17 130.9 12.2 127 604-731 15-151 (152)
40 3f1p_A Endothelial PAS domain- 99.4 3.5E-13 1.2E-17 124.6 10.2 109 619-729 7-116 (117)
41 4dj2_A Period circadian protei 99.4 1.6E-12 5.3E-17 142.6 16.7 223 616-865 31-281 (320)
42 3sw1_A Sensory box protein; li 99.4 1.2E-12 4E-17 128.0 14.0 131 610-742 24-157 (162)
43 1n9l_A PHOT-LOV1, putative blu 99.4 1.5E-12 5E-17 119.4 13.1 102 754-866 5-109 (109)
44 3sw1_A Sensory box protein; li 99.4 1.7E-12 5.8E-17 126.9 13.7 128 738-879 24-154 (162)
45 3gdi_A Period circadian protei 99.4 9.2E-12 3.1E-16 135.9 20.7 224 616-865 20-270 (309)
46 3h9w_A Diguanylate cyclase wit 99.4 9.5E-13 3.2E-17 121.3 10.8 108 754-871 5-113 (115)
47 2vv6_A FIXL, sensor protein FI 99.4 2.8E-12 9.5E-17 119.0 13.7 110 754-876 5-118 (119)
48 3lyx_A Sensory BOX/ggdef domai 99.4 3.3E-12 1.1E-16 116.7 13.9 119 737-869 5-123 (124)
49 2r78_A Sensor protein; sensory 99.4 4.9E-12 1.7E-16 117.4 14.1 113 733-865 5-117 (117)
50 2vv6_A FIXL, sensor protein FI 99.4 1.7E-12 5.7E-17 120.5 10.8 112 619-736 1-118 (119)
51 3lyx_A Sensory BOX/ggdef domai 99.4 6.1E-12 2.1E-16 114.8 14.3 119 609-729 5-123 (124)
52 3ewk_A Sensor protein; PAS dom 99.4 5.1E-12 1.8E-16 132.2 15.5 113 755-878 2-114 (227)
53 3mqq_A Transcriptional regulat 99.4 1.2E-12 4.1E-17 121.6 9.5 116 740-870 4-119 (120)
54 3eeh_A Putative light and redo 99.4 4.4E-12 1.5E-16 116.4 13.0 121 730-865 2-125 (125)
55 4eet_B Phototropin-2; LOV, blu 99.4 6.1E-12 2.1E-16 114.2 13.8 111 616-728 2-115 (115)
56 2z6d_A Phototropin-2; PAS-fold 99.4 7.3E-12 2.5E-16 115.1 14.4 124 608-733 3-129 (130)
57 3mqq_A Transcriptional regulat 99.4 1.9E-12 6.5E-17 120.2 10.4 115 612-730 4-119 (120)
58 4eet_B Phototropin-2; LOV, blu 99.4 4.9E-12 1.7E-16 114.9 12.9 110 744-867 2-114 (115)
59 2v0u_A NPH1-1, LOV2; kinase, t 99.4 4.7E-12 1.6E-16 119.4 13.0 132 614-748 5-139 (146)
60 1d06_A Nitrogen fixation regul 99.4 2.6E-12 9E-17 121.3 11.1 121 601-725 6-130 (130)
61 3h9w_A Diguanylate cyclase wit 99.4 2.5E-12 8.6E-17 118.4 10.7 111 620-732 2-114 (115)
62 3icy_A Sensor protein; sensory 99.3 4E-12 1.4E-16 116.6 11.8 117 737-865 2-118 (118)
63 3k3c_A Protein RV1364C/MT1410; 99.3 5.1E-12 1.8E-16 123.2 13.3 127 736-878 14-146 (158)
64 2z6d_A Phototropin-2; PAS-fold 99.3 6E-12 2.1E-16 115.7 12.5 123 736-872 3-128 (130)
65 2v0u_A NPH1-1, LOV2; kinase, t 99.3 6.7E-12 2.3E-16 118.4 13.1 115 741-869 4-121 (146)
66 3luq_A Sensor protein; PAS, hi 99.3 5.7E-12 1.9E-16 114.4 12.0 113 738-865 2-114 (114)
67 3luq_A Sensor protein; PAS, hi 99.3 9.1E-12 3.1E-16 113.0 13.4 112 611-725 3-114 (114)
68 1n9l_A PHOT-LOV1, putative blu 99.3 1.3E-11 4.4E-16 113.0 13.6 105 620-726 2-109 (109)
69 1v9y_A Heme PAS sensor protein 99.3 5E-12 1.7E-16 123.5 10.7 142 719-876 20-165 (167)
70 3icy_A Sensor protein; sensory 99.3 9.4E-12 3.2E-16 114.0 10.8 115 609-725 2-118 (118)
71 3eeh_A Putative light and redo 99.3 9.8E-12 3.4E-16 114.0 10.9 120 603-725 3-125 (125)
72 2r78_A Sensor protein; sensory 99.3 3.1E-11 1.1E-15 111.9 14.1 113 605-725 5-117 (117)
73 3mxq_A Sensor protein; PSI2, M 99.3 5.2E-12 1.8E-16 123.5 8.9 123 733-870 16-150 (152)
74 2wkq_A NPH1-1, RAS-related C3 99.3 2.3E-11 7.8E-16 135.0 14.3 118 743-874 15-135 (332)
75 2wkq_A NPH1-1, RAS-related C3 99.2 5.1E-11 1.7E-15 132.1 14.9 119 615-735 15-136 (332)
76 3mjq_A Uncharacterized protein 99.2 2.9E-11 9.9E-16 112.0 10.9 117 742-875 2-118 (126)
77 3mjq_A Uncharacterized protein 99.2 2.3E-11 7.9E-16 112.7 9.4 119 614-737 2-120 (126)
78 3vol_A Aerotaxis transducer AE 99.2 9E-11 3.1E-15 123.5 14.9 120 739-882 22-153 (233)
79 3bwl_A Sensor protein; structu 99.2 1.5E-10 5.3E-15 107.8 14.8 118 601-725 7-126 (126)
80 2kdk_A ARYL hydrocarbon recept 99.2 7.1E-11 2.4E-15 109.3 12.2 111 616-728 8-120 (121)
81 3kx0_X Uncharacterized protein 99.2 1.6E-11 5.5E-16 124.0 7.9 123 735-873 33-161 (185)
82 2kdk_A ARYL hydrocarbon recept 99.2 8.7E-11 3E-15 108.6 12.0 110 744-867 8-119 (121)
83 3vol_A Aerotaxis transducer AE 99.2 2.2E-10 7.4E-15 120.6 16.5 153 608-786 19-184 (233)
84 1v9y_A Heme PAS sensor protein 99.2 5.1E-11 1.7E-15 116.3 10.8 130 603-736 32-165 (167)
85 3p01_A Two-component response 99.2 3.4E-10 1.2E-14 114.2 17.2 151 196-391 27-178 (184)
86 3olo_A Two-component sensor hi 99.2 1E-10 3.5E-15 107.0 10.7 111 734-865 8-118 (118)
87 3olo_A Two-component sensor hi 99.1 2.8E-10 9.7E-15 104.0 12.2 111 606-725 8-118 (118)
88 4eho_A Bacteriophytochrome, PA 99.1 5.3E-12 1.8E-16 152.3 0.0 118 739-871 518-635 (635)
89 1byw_A Protein (human ERG pota 99.1 8.7E-10 3E-14 97.9 12.2 104 754-867 3-110 (110)
90 2qkp_A Uncharacterized protein 99.1 4.2E-10 1.4E-14 109.9 10.7 123 611-738 19-144 (151)
91 2l0w_A Potassium voltage-gated 99.1 1.7E-09 5.7E-14 100.7 14.4 113 613-727 21-138 (138)
92 2l0w_A Potassium voltage-gated 99.1 1.2E-09 4.2E-14 101.6 13.3 114 741-867 21-138 (138)
93 3fc7_A HTR-like protein, senso 99.0 2.6E-10 8.9E-15 105.6 7.6 108 609-725 17-125 (125)
94 2zmf_A CAMP and CAMP-inhibited 99.0 4E-09 1.4E-13 105.8 16.8 154 200-392 14-176 (189)
95 4hi4_A Aerotaxis transducer AE 99.0 3.4E-09 1.2E-13 98.7 14.2 105 611-727 5-121 (121)
96 3fg8_A Uncharacterized protein 99.0 2.2E-10 7.4E-15 106.3 5.3 112 606-727 7-118 (118)
97 1byw_A Protein (human ERG pota 99.0 4.9E-09 1.7E-13 92.9 13.6 104 622-727 2-110 (110)
98 3d72_A Vivid PAS protein VVD; 99.0 2.9E-09 1E-13 102.2 12.6 115 743-863 30-149 (149)
99 3oov_A Methyl-accepting chemot 99.0 1.4E-08 4.6E-13 99.9 17.4 155 204-392 7-162 (169)
100 3mfx_A Sensory BOX/ggdef famil 99.0 1.4E-09 4.9E-14 103.1 9.7 113 739-865 7-123 (129)
101 3fc7_A HTR-like protein, senso 98.9 1E-09 3.6E-14 101.4 7.8 108 737-865 17-125 (125)
102 4hi4_A Aerotaxis transducer AE 98.9 8.5E-09 2.9E-13 96.0 12.9 105 739-867 5-121 (121)
103 3k2n_A Sigma-54-dependent tran 98.9 3.1E-08 1.1E-12 98.3 17.9 158 198-392 5-166 (177)
104 2vlg_A Sporulation kinase A; h 98.9 5.4E-09 1.9E-13 96.2 11.3 103 743-862 3-106 (111)
105 3mfx_A Sensory BOX/ggdef famil 98.9 2.5E-09 8.6E-14 101.4 8.7 111 611-726 7-124 (129)
106 3trc_A Phosphoenolpyruvate-pro 98.9 2.3E-08 8E-13 98.3 15.9 158 195-392 4-161 (171)
107 3d72_A Vivid PAS protein VVD; 98.9 5.8E-09 2E-13 100.1 11.2 105 616-723 31-149 (149)
108 4f3l_B BMAL1B; BHLH, PAS, circ 98.9 3.4E-09 1.2E-13 120.0 10.8 109 619-729 276-386 (387)
109 4f3l_A Mclock, circadian locom 98.9 3.2E-09 1.1E-13 119.2 10.1 110 620-731 250-360 (361)
110 1ykd_A Adenylate cyclase; GAF 98.9 2.4E-07 8.3E-12 105.2 25.7 324 199-583 9-378 (398)
111 3e0y_A Conserved domain protei 98.9 4E-08 1.4E-12 97.5 16.8 149 202-392 18-166 (181)
112 3ci6_A Phosphoenolpyruvate-pro 98.9 9.2E-08 3.2E-12 93.4 18.9 156 197-392 8-163 (171)
113 2vlg_A Sporulation kinase A; h 98.9 5.5E-09 1.9E-13 96.2 9.0 93 615-712 3-95 (111)
114 2qyb_A Membrane protein, putat 98.8 3E-08 1E-12 99.1 14.6 143 213-393 15-159 (181)
115 2e4s_A CAMP and CAMP-inhibited 98.8 3.7E-08 1.3E-12 98.8 15.1 157 197-393 11-177 (189)
116 2ykf_A Pdtas, probable sensor 98.3 3.6E-10 1.2E-14 123.6 0.0 159 700-875 111-294 (305)
117 3ibj_A CGMP-dependent 3',5'-cy 98.8 4.4E-07 1.5E-11 110.8 27.4 205 198-445 14-222 (691)
118 3b33_A Sensor protein; structu 98.8 1.1E-08 3.7E-13 93.5 9.9 105 614-725 10-115 (115)
119 3fg8_A Uncharacterized protein 98.8 1.9E-09 6.4E-14 99.9 4.6 112 734-867 7-118 (118)
120 3b33_A Sensor protein; structu 98.8 2E-08 7E-13 91.6 11.2 105 742-865 10-115 (115)
121 2qkp_A Uncharacterized protein 98.8 1.1E-08 3.9E-13 99.6 9.3 117 740-873 20-139 (151)
122 1mc0_A 3',5'-cyclic nucleotide 98.8 9.2E-08 3.1E-12 107.3 16.5 204 199-445 14-222 (368)
123 3a0r_A Sensor protein; four he 98.7 1.6E-09 5.6E-14 120.6 1.7 121 606-735 3-124 (349)
124 3hcy_A Putative two-component 98.7 4E-08 1.4E-12 95.0 11.1 138 213-392 1-139 (151)
125 2w0n_A Sensor protein DCUS; si 98.7 3.3E-09 1.1E-13 96.6 2.4 108 603-725 7-118 (118)
126 3cax_A Uncharacterized protein 98.7 4.1E-08 1.4E-12 110.4 11.7 112 611-732 239-352 (369)
127 1ll8_A PAS kinase; PAS domain, 98.7 1.8E-08 6.1E-13 92.2 5.6 99 754-865 10-113 (114)
128 3a0s_A Sensor protein; PAS-fol 98.6 2.1E-07 7.1E-12 80.1 12.0 95 620-723 1-96 (96)
129 1ll8_A PAS kinase; PAS domain, 98.6 1.4E-08 4.9E-13 92.8 4.5 103 619-725 6-113 (114)
130 3o5y_A Sensor protein; GAF dom 98.6 6.5E-07 2.2E-11 88.5 15.8 138 214-392 4-143 (165)
131 1mc0_A 3',5'-cyclic nucleotide 98.6 1.1E-06 3.7E-11 98.5 17.6 150 202-392 184-337 (368)
132 2w0n_A Sensor protein DCUS; si 98.5 3E-08 1E-12 90.1 3.8 108 732-865 8-118 (118)
133 2jhe_A Transcription regulator 98.5 7.4E-08 2.5E-12 97.1 5.5 109 608-728 77-189 (190)
134 4fpp_A Phosphotransferase; fou 98.4 1.6E-07 5.6E-12 99.4 6.5 84 851-939 17-100 (247)
135 2c2a_A Sensor histidine kinase 98.4 1.7E-07 5.7E-12 99.7 6.6 83 862-949 2-88 (258)
136 3cax_A Uncharacterized protein 98.4 6.1E-07 2.1E-11 100.8 11.0 112 740-871 240-351 (369)
137 1nwz_A PYP, photoactive yellow 98.4 2.1E-06 7.3E-11 79.6 12.1 101 742-858 20-121 (125)
138 2vjw_A GAF-B, GAF family prote 98.4 5E-06 1.7E-10 80.5 15.5 128 215-391 1-133 (149)
139 3a0s_A Sensor protein; PAS-fol 98.4 1.3E-06 4.6E-11 74.9 10.3 92 754-863 4-96 (96)
140 4dj3_A Period circadian protei 98.4 1.1E-06 3.8E-11 96.0 11.7 124 622-747 175-315 (317)
141 1nwz_A PYP, photoactive yellow 98.4 1.2E-06 4.2E-11 81.3 10.0 101 614-719 20-122 (125)
142 2w3g_A DOSS, two component sen 98.4 1E-06 3.5E-11 84.5 9.7 140 213-392 4-145 (153)
143 1mzu_A PPR; photoactive yellow 98.4 3E-06 1E-10 78.8 12.2 100 743-858 26-126 (129)
144 2jhe_A Transcription regulator 98.3 2.6E-07 8.8E-12 93.1 4.9 106 738-868 79-189 (190)
145 1mzu_A PPR; photoactive yellow 98.3 1.7E-06 5.7E-11 80.5 9.6 99 616-719 27-127 (129)
146 1ykd_A Adenylate cyclase; GAF 98.3 7.9E-06 2.7E-10 92.6 17.5 140 214-392 213-376 (398)
147 3rty_A Period circadian protei 98.3 2.6E-06 8.8E-11 94.0 11.0 105 621-727 154-264 (339)
148 2ykf_A Pdtas, probable sensor 97.5 1.8E-07 6E-12 102.2 0.0 121 615-744 174-303 (305)
149 3ibj_A CGMP-dependent 3',5'-cy 98.1 2E-05 6.9E-10 96.1 16.6 141 214-393 195-338 (691)
150 3dba_A CONE CGMP-specific 3',5 98.1 3E-05 1E-09 77.5 15.1 154 198-390 6-171 (180)
151 3gdi_A Period circadian protei 98.1 1.6E-05 5.4E-10 86.5 12.9 104 622-727 166-272 (309)
152 4dj2_A Period circadian protei 98.0 1.6E-05 5.3E-10 87.0 11.5 105 621-727 176-283 (320)
153 3mmh_A FRMSR, methionine-R-sul 98.0 0.00028 9.4E-09 69.5 18.6 145 198-390 15-160 (167)
154 3bjc_A CGMP-specific 3',5'-cyc 98.0 7.8E-07 2.7E-11 111.4 0.0 155 199-392 153-319 (878)
155 4ew8_A Sensor protein DIVL; si 98.0 2E-05 6.9E-10 83.8 10.0 71 879-949 34-106 (268)
156 1vhm_A Protein YEBR; structura 97.6 0.0022 7.7E-08 64.6 18.1 142 200-391 30-172 (195)
157 1f5m_A GAF; CGMP binding, sign 97.4 0.0027 9.3E-08 63.2 15.6 132 213-389 39-176 (180)
158 3ksh_A Putative uncharacterize 97.4 0.0082 2.8E-07 58.2 17.5 130 213-390 29-159 (160)
159 3d36_A Sporulation kinase B; G 97.3 0.0001 3.5E-09 76.9 4.2 66 884-949 13-80 (244)
160 3zcc_A HAMP, osmolarity sensor 97.3 0.00052 1.8E-08 62.0 8.2 59 879-942 54-113 (114)
161 1gkz_A [3-methyl-2-oxobutanoat 97.3 0.00034 1.2E-08 78.9 7.7 68 883-950 119-188 (388)
162 3rfb_A Putative uncharacterize 97.3 0.011 3.8E-07 57.9 17.4 144 198-390 16-160 (171)
163 3jz3_A Sensor protein QSEC; he 97.2 1.8E-05 6.3E-10 81.3 -3.4 66 885-950 2-69 (222)
164 3cit_A Sensor histidine kinase 96.9 0.028 9.7E-07 53.9 15.5 136 196-393 12-148 (160)
165 2btz_A Pyruvate dehydrogenase 96.3 0.0034 1.2E-07 70.9 5.7 60 886-947 96-167 (394)
166 3zrx_A AF1503 protein, osmolar 96.2 0.013 4.5E-07 52.4 8.5 58 882-944 57-115 (115)
167 3bjc_A CGMP-specific 3',5'-cyc 96.2 0.00083 2.9E-08 84.0 0.0 143 214-392 348-508 (878)
168 1oj5_A Steroid receptor coacti 96.0 0.011 3.7E-07 54.6 6.6 103 754-866 9-114 (132)
169 2e0a_A Pyruvate dehydrogenase 96.0 0.012 4E-07 66.4 8.2 58 886-945 96-166 (394)
170 1oj5_A Steroid receptor coacti 95.9 0.01 3.5E-07 54.8 5.9 102 621-725 7-113 (132)
171 2q8g_A [pyruvate dehydrogenase 95.4 0.016 5.6E-07 65.5 6.8 59 887-947 107-177 (407)
172 1y8o_A [pyruvate dehydrogenase 92.8 0.096 3.3E-06 59.4 5.8 58 889-948 121-191 (419)
173 3ehh_A Sensor kinase (YOCF pro 92.0 0.35 1.2E-05 48.7 8.3 57 883-939 26-84 (218)
174 3szt_A QCSR, quorum-sensing co 88.0 4.3 0.00015 41.6 12.7 138 204-379 8-145 (237)
175 3eea_A GAF domain/HD domain pr 85.9 17 0.00059 33.3 13.3 138 215-392 13-156 (162)
176 1b3q_A Protein (chemotaxis pro 85.8 0.48 1.6E-05 52.7 4.1 50 883-943 8-58 (379)
177 2ool_A Sensor protein; bacteri 81.7 1.9 6.5E-05 46.8 6.5 47 625-671 46-93 (337)
178 4dah_A Sporulation kinase D; a 78.0 34 0.0012 33.7 14.3 124 607-769 54-179 (217)
179 2w1r_A Spovt, stage V sporulat 77.4 7.8 0.00027 35.3 8.3 120 219-391 3-122 (123)
180 4ew7_A Conjugative transfer: r 77.2 20 0.0007 30.9 9.9 41 613-653 22-62 (127)
181 1p0z_A Sensor kinase CITA; tra 75.5 7.1 0.00024 35.8 7.6 31 835-865 96-126 (131)
182 3qp6_A CVIR transcriptional re 69.3 70 0.0024 33.0 14.5 133 198-365 21-158 (265)
183 3e4o_A C4-dicarboxylate transp 68.4 42 0.0014 35.6 12.7 120 609-768 100-220 (305)
184 3lif_A Putative diguanylate cy 58.1 1.5E+02 0.0052 29.5 15.1 121 609-768 56-182 (254)
185 3by8_A Sensor protein DCUS; hi 56.6 40 0.0014 31.0 8.8 28 839-866 105-132 (142)
186 3e98_A GAF domain of unknown f 55.7 37 0.0013 34.9 9.0 42 202-245 106-147 (252)
187 1p0z_A Sensor kinase CITA; tra 55.4 1.1E+02 0.0037 27.5 11.4 77 622-726 51-127 (131)
188 1ixm_A SPO0B, protein (sporula 54.0 26 0.0009 34.5 7.2 47 885-935 21-67 (192)
189 3qp1_A CVIR transcriptional re 52.2 1.7E+02 0.0057 28.1 14.8 147 201-383 19-170 (182)
190 3nhq_A Bacteriophytochrome; ph 48.4 7.7 0.00026 44.4 2.6 39 202-242 323-361 (505)
191 4dah_A Sporulation kinase D; a 48.2 37 0.0013 33.4 7.6 32 833-866 120-151 (217)
192 2q0o_A Probable transcriptiona 42.6 94 0.0032 31.2 9.7 120 206-366 11-135 (236)
193 3by8_A Sensor protein DCUS; hi 39.9 94 0.0032 28.4 8.4 77 622-727 57-133 (142)
194 4e04_A Bacteriophytochrome (li 39.3 14 0.00048 39.7 2.7 47 623-669 31-77 (327)
195 1l3l_A Transcriptional activat 32.1 1.6E+02 0.0054 29.4 9.3 119 206-366 9-133 (234)
196 2avx_A Regulatory protein SDIA 31.2 3.3E+02 0.011 25.4 15.4 128 202-367 11-139 (171)
197 3s7o_A Bacteriophytochrome; bi 30.9 25 0.00086 37.9 3.0 45 624-669 55-100 (343)
198 3by9_A Sensor protein; histidi 29.5 4.1E+02 0.014 26.0 13.3 107 622-768 73-179 (260)
199 4eu0_A PELD; C-DI-GMP, signali 25.3 6E+02 0.02 26.5 14.6 124 216-391 24-151 (298)
200 3e4o_A C4-dicarboxylate transp 24.1 2.4E+02 0.0083 29.5 9.4 31 833-866 165-195 (305)
201 2hje_A Autoinducer 2 sensor ki 20.3 6.4E+02 0.022 25.0 10.8 93 617-734 58-152 (221)
202 4ew7_A Conjugative transfer: r 20.1 4.2E+02 0.015 22.9 10.5 35 740-777 21-55 (127)
203 3lid_A Putative sensory BOX/gg 20.1 2.2E+02 0.0074 29.6 7.9 136 606-768 62-204 (295)
No 1
>4eho_A Bacteriophytochrome, PAS/PAC sensor; photoreceptor, bacteriopbhytochrome; HET: MSE BLA; 2.90A {Rhodopseudomonas palustris tie-1}
Probab=100.00 E-value=4.9e-116 Score=1060.32 Aligned_cols=606 Identities=27% Similarity=0.454 Sum_probs=529.5
Q ss_pred HhhhcccCCCCCCccceEEEEecCCceEEEEccChhhhhCCCCCCCCCcccchhhccCCchhhccChhhHHHHHHHhccC
Q 002210 66 AYLQRVQRGRLIQPFGCMIAVDEQNFTVLGYSENAPEMLDLAPHAVPNIEQQDALTLGIDVRTLFTSSGAAALQKAANFG 145 (953)
Q Consensus 66 ~~~~~i~~~g~iQ~~G~ll~~~~~~~~i~~~S~N~~~~lg~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~ 145 (953)
=--||||+||+|||||||||+|+++++|++||+|+.++||+++ ++|+++.+++++.....+.....
T Consensus 20 C~~EpIh~pg~IQp~G~Ll~~~~~~~~i~~~S~N~~~~lg~~~------------~lg~~l~~~~~~~~~~~~~~~~~-- 85 (635)
T 4eho_A 20 CEREEIHLAGSIQPHGALLVVSEPDHRIIQASANAAEFLNLGS------------VLGVPLAEIDGDLLIKILPHLDP-- 85 (635)
T ss_dssp TTSCBCSSCSEECTTEEEEEECTTTCBEEEEETTHHHHHTCSC------------CSSCBSSSSSSSHHHHHGGGCCS--
T ss_pred cccccccCcCcccCCeEEEEEECCCCeEEEEeCcHHhhhCcHh------------hhCCCHHHHcchHHHHHHhhhhh--
Confidence 3458999999999999999999999999999999999999743 58999999999877666654322
Q ss_pred CCCCCCceEEeec--CCCceEEEEEEee-CCEEEEEEeeCCCCCCcchhhhhhHHHHHHHHHHHHhccCCCCCHHHHHHH
Q 002210 146 EVNLLNPILIHCK--TSGKPFYAILHRI-DVGLVIDLEPVNPDDVPVTAAGALKSYKLAAKAISRLQSLPSGNISLLCDV 222 (953)
Q Consensus 146 ~~~~~~~~~~~~~--~~~~~~~~~~h~~-~~~~~ie~Ep~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~l~~~ 222 (953)
....+|+.++++ ..++.|++++||. ++.+||||||..+.. +..+ ++.++++||++ ++++++||++
T Consensus 86 -~~~~~~~~~~~~~~~~~~~~~~~~hr~~~~~li~elE~~~~~~---~~~~------~~~~~~~~i~~--s~~l~~i~~~ 153 (635)
T 4eho_A 86 -TAEGMPVAVRCRIGNPSTEYDGLMHRPPEGGLIIELERAGPPI---DLSG------TLAPALERIRT--AGSLRALCDD 153 (635)
T ss_dssp -SSCCCSCEEEEEETTTTEEEEEECCCCSSSSEEEEEECCCSCC---CCCT------TSSSHHHHHHH--CCSHHHHHHH
T ss_pred -hccCCceeEEEEecCCCceEEEEEEEcCCCEEEEEEEECCCch---hHHH------HHHHHHHHHHh--hCCHHHHHHH
Confidence 123346666554 5577999999995 578999999986532 2222 33568999999 8899999999
Q ss_pred HHHHHHhhhCCCeEEEEeecCCCCceEEEeecCCCCCCccCCCCCCCCccHHHHHHHHhCCceEeecCCCCCceeee--C
Q 002210 223 LVNEVSDLTGYDRVMVYKFHEDEHGEVVAECRRPDLEPYLGFHYPATDIPQASRFLIMKNKVRMICDCLAPPVKVIQ--D 300 (953)
Q Consensus 223 ~v~~vr~~~g~DRVmiY~F~~d~~G~viaE~~~~~~~~~lg~~~pa~dip~~ar~ly~~n~~r~i~D~~~~~~~l~~--~ 300 (953)
+|++||++|||||||||||++||||+||||++.++|+||||+||||+|||+++|++|++|++|+|+|++++||+|++ +
T Consensus 154 ~v~evr~l~~~DRv~iy~F~~d~~G~vvaE~~~~~~~s~lg~~~p~~dip~~~r~ly~~~~~r~i~d~~~~~v~~~~~~~ 233 (635)
T 4eho_A 154 TALLFQQCTGYDRVMVYRFDEQGHGEVFSERHVPGLESYFGNRYPSSDIPQMARRLYERQRVRVLVDVSYQPVPLEPRLS 233 (635)
T ss_dssp HHHHHHHHSCCSEEEEEEECTTCCEEEEEEECCTTCCCCTTCEECSTTSCHHHHHHHHHSCEEEESCSSCCCEEEESSBC
T ss_pred HHHHHHHHhCCCeEEEEEECCCCCEEEEEEEcCCCCccccCCccCCcchHHHHHHHHHcCCeEEEecccCCccccccCcC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999986 4
Q ss_pred CCCCCccccCCccccCCChhHHHHhhhcCCeeEEEEEEEEeCCcccccccccCCCceeEEEeeecCCCCCCChhHHHHHH
Q 002210 301 KKLDQPLSLCGSTLRAPHGCHARYMENMGSIASLVMSVTINEAEDELDNDQEQGRKLWGLVVCHHTSPRFVPFPLRYACE 380 (953)
Q Consensus 301 ~~~~~~ldl~~s~lr~~s~~h~~yl~nmgv~asl~~~i~~~~~~~~~~~~~~~~~~LWGLi~~hh~~pr~~~~~~r~~~~ 380 (953)
+.+++|+|||+|++|++||||+|||+||||+|||+|||+++ +||||||+||||+||+|++++|.+|+
T Consensus 234 ~~~~~~ldl~~~~~r~~sp~h~~yl~~~~v~asl~vpi~~~-------------~~LWGLl~~h~~~pr~~~~~~~~~~~ 300 (635)
T 4eho_A 234 PLTGRDLDMSGCFLRSMSPIHLQYLKNMGVRATLVVSLVVG-------------GKLWGLVACHHYLPRFIHFELRAICE 300 (635)
T ss_dssp TTTSSBCCGGGCTTBCCCHHHHHHHHHHTCCEEEEEEEEET-------------TEEEEEEEEEESSCCCCCHHHHHHHH
T ss_pred cccCCccccccceecCCCHHHHHHHHhhCcceEEEEEEEEc-------------ceeeeeeeeecCCCCcCCHHHHHHHH
Confidence 67899999999999999999999999999999999999998 99999999999999999999999999
Q ss_pred HHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHhhccCC--CCccccCCcchhhhccCCeEEEEECCeEEEeCCCCCHH
Q 002210 381 FLIQVFGVQVNKEVELSAQLREKHILRTQTVLCDMLLRDS--PVGIVTQTPNVMDLVKCDGAALYYRGKLWLLGVTPTEE 458 (953)
Q Consensus 381 ~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~l~~l~~~dg~a~~~~~~~~~~G~~p~~~ 458 (953)
+|++++|++|+++...+.++.++++.++++.+++++.+.. +.++.++.++++++++|||+++|+++++|++|.+|++.
T Consensus 301 ~l~~~~~~~i~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~l~~~~~~l~~l~~adg~al~~~~~~~~~G~~P~~~ 380 (635)
T 4eho_A 301 LLAEAIATRITALESFAQSQSELFVQRLEQRMIEAITREGDWRAAIFDTSQSILQPLHADGCALVYEDQIRTIGDVPSTQ 380 (635)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTSSSSCSHHHHSCTTSCSSGGGTCSEEEEEETTEEEEEESCCCHH
T ss_pred HHHHHHHHHHhHHHhHHHHHHHHHHHHHHHHHHHHHhccCchhhHHHhcChHHHhhhcCCeEEEEECCEEEEEeCCCCHH
Confidence 9999999999988777777888888888999999887654 46789999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhhcCCCeEEEecccCcCCCCCccccccccceEEEEEeCC--CCEEEEeccCcccEEeccCCCCCCCCC-C
Q 002210 459 QIKDIAEWLLEYHRGSTGLSTDSLVEAGYPGALALGDAVCGIAAVKITS--KDFLFWFRSHTAKEIKWGGAKHDSGGK-D 535 (953)
Q Consensus 459 ~~~~l~~~l~~~~~~~~~~~t~~l~~~~~p~~~~~~~~~~g~~~~~i~~--~~~l~wfR~e~~~~v~WaG~p~~~~~~-~ 535 (953)
++.+|+.|+...+. ..+|+|++|.. +||++..+++.+|||++++|+. ++|++|||+++.++++|+|+|+++... +
T Consensus 381 ~i~~l~~wl~~~~~-~~~~~t~~l~~-~~p~~~~~~~~~~G~l~~~i~~~~~~~l~~fR~e~~~~v~WaG~p~~~~~~~~ 458 (635)
T 4eho_A 381 DVREIAGWLDRQPR-AAVTSTASLGL-DVPELAHLTRMASGVVAAPISDHRGEFLMWFRPERVHTVTWGGDPKKPFTMGD 458 (635)
T ss_dssp HHHHHHHHHTTSCC-CSSEEESCHHH-HCGGGGGGHHHHSEEEEEECSSSSSCEEEEEECCTTTTTCSSSCCSCCCCSCC
T ss_pred HHHHHHHHHHhcCC-CcEEEeccccc-cCcchhhhhhhcccEEEEEecCCCCcEEEEeccceeEEEEeccCCCCccccCC
Confidence 99999999987654 47899999985 6999999999999999999986 599999999999999999999999764 4
Q ss_pred CCccccccccccceeeeeeccccCchhhHHHHHHHHHHHHHHHhHHHHhhhccceecccccccccccHHHHHHHHHHHHH
Q 002210 536 GGRKMHPRSSFKAFLEVVKQRSLPWEDVEMDAIHSLQLILRGSLQDEVAEDSKMIVNVPSVDDRIEKIDELRIITNEMVR 615 (953)
Q Consensus 536 dg~~l~PR~SF~~w~e~v~g~s~pW~~~ei~aa~~L~~il~~~~~~~~~~~~~~~~~~~l~~~~l~~~~eL~~~~~~l~~ 615 (953)
+|.+|+||+||++|.+.+++++.||...++.++..++..+.......+.. ....+++...++.+
T Consensus 459 ~~~~l~PR~SF~~w~e~v~~~s~pW~~~e~~aa~~l~~~l~~~il~~r~~----------------~~~~a~e~~~~~~~ 522 (635)
T 4eho_A 459 TPADLSPRRSFAKWHQVVEGTSDPWTAADLAAAGTIGQTVADIVLQFRAV----------------RTLIAREQVPQASS 522 (635)
T ss_dssp SGGGCSHHHHHHHHHHTTTTCCSCCCTTHHHHHHHHHHHHHHHHHHHHHH----------------HHHHHHHTSSSHHH
T ss_pred CcceecceeeeecccceeeecccccchhhhHHHHhhhhhHHHHHHHHhHH----------------HHHHHHHHHHHHHH
Confidence 57799999999999999999999999999999999977666554433310 11223333445778
Q ss_pred HHHhcCccEEEEcCCCcEEecCHHHHHHhCCCcchhcCCCccccccCCcHHHHHHHHHHHhcccceEEEEEEEcccCCCC
Q 002210 616 LIETAAVPILAVDASGNVNGWNSKAAELTGLTVDQAIGTALVDLVAGDSVDVVKNMLSSAFLEERNVEIKLRAFGPRETS 695 (953)
Q Consensus 616 lle~~~~~I~~~D~dg~i~~~N~a~~~l~G~~~~eliG~~~~dl~~~~~~~~~~~~l~~~l~~~~~~e~~~~~~~~~~dG 695 (953)
++++++++|+++|.+|+|++||+++++++||+.++++|++.....++++.+.+......+. .++.+..+++. +++||
T Consensus 523 lle~a~~~i~~~D~~grI~~~N~a~~~l~G~s~~e~~g~~~l~~~~~~~~~~~~~i~~~l~-~g~~~~~E~~~--~~~dG 599 (635)
T 4eho_A 523 QVHASMQPVLITDAEGRILLMNDSFRDMLPAGSPSAVHLDDLAGFFVESNDFLRNVAELID-HGRGWRGEVLL--RGAGN 599 (635)
T ss_dssp HHHHCSSCCEEEETTCCEEEECHHHHTTSCSSCCCCCSSGGGTTSSSSCTHHHHHHHHHHH-HCCCBCCCCEE--CCSSS
T ss_pred HHHhCCCcEEEECCCCeEeeHHHHHHHHHCcChHHHcCcchhhccCCCCHHHHHHHHHHHH-cCCcEEEEEEE--EccCC
Confidence 8999999999999999999999999999999999999999888888888887776665544 22333334443 56799
Q ss_pred CEEEEEEEEEEeecCCCCEEEEEEEEEecchhHHHH
Q 002210 696 GPVILVVNACCTQDTKENVIGVCFVGQDITGQKLVM 731 (953)
Q Consensus 696 ~~~~v~v~~~pi~d~~g~v~gvv~v~~DITerk~~E 731 (953)
+.+|+.++++|++|.+|+++|++++++|||+||++|
T Consensus 600 ~~~~~~~~~~pv~d~~G~v~g~v~i~~DITerK~aE 635 (635)
T 4eho_A 600 RPLPLAVRADPVTRTEDQSLGFVLIFSDATDRRTAD 635 (635)
T ss_dssp SCEECCCCEEEECSTTSSCCEEEECCCCCSSSCCCC
T ss_pred cEEEEEEEEEEEECCCCCEEEEEEEEEeCchHhhCC
Confidence 999999999999999999999999999999999764
No 2
>3zq5_A Phytochrome-like protein CPH1; arginine finger, tandem GAF domain, receptor, PAS domain, chromophore, sensory transduction; HET: CYC; 1.95A {Synechocystis SP} PDB: 2vea_A*
Probab=100.00 E-value=1.2e-111 Score=973.16 Aligned_cols=483 Identities=32% Similarity=0.596 Sum_probs=434.9
Q ss_pred hhhcccCCCCCCccceEEEEecCCceEEEEccChhhhhCCCCCCCCCcccchhhccCCchhhccChhhHHHHHHHhccCC
Q 002210 67 YLQRVQRGRLIQPFGCMIAVDEQNFTVLGYSENAPEMLDLAPHAVPNIEQQDALTLGIDVRTLFTSSGAAALQKAANFGE 146 (953)
Q Consensus 67 ~~~~i~~~g~iQ~~G~ll~~~~~~~~i~~~S~N~~~~lg~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~ 146 (953)
--||||+||+|||||||||+|+++++|++||+|++++||++|++ ++|+++.++|++.+.+.++.++...+
T Consensus 16 drEPIh~pG~IQphG~LLal~~~~~~I~~~S~N~~~~lg~~~~~----------llG~~l~~ll~~~~~~~l~~~l~~~~ 85 (520)
T 3zq5_A 16 ETLAIHTAHLIQPHGLVVVLQEPDLTISQISANCTGILGRSPED----------LLGRTLGEVFDSFQIDPIQSRLTAGQ 85 (520)
T ss_dssp HTCCGGGCCEECTTSEEEEEETTTTEEEEEETTHHHHHSCCHHH----------HTTSBHHHHCEESSCCCCSSCCCHHH
T ss_pred ccccccCCCccCCCeEEEEEECCCCEEEEEcccHHHHhCcChHH----------HcCCCHHHHcCHHHHHHHHHHhcccc
Confidence 35899999999999999999999999999999999999998753 79999999999888777766554443
Q ss_pred CCCCCceEEeec--CCCc-eEEEEEEee-CCEEEEEEeeCCCCCCcchhhhhhHHHHHHHHHHHHhccCCCCCHHHHHHH
Q 002210 147 VNLLNPILIHCK--TSGK-PFYAILHRI-DVGLVIDLEPVNPDDVPVTAAGALKSYKLAAKAISRLQSLPSGNISLLCDV 222 (953)
Q Consensus 147 ~~~~~~~~~~~~--~~~~-~~~~~~h~~-~~~~~ie~Ep~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~l~~~ 222 (953)
....+|+.++++ .+++ .|++++||+ ++++||||||..+.+.. +..+.++++.+++.||++ +.++++||++
T Consensus 86 ~~~~~p~~~~~~~~~~~~~~f~~~~Hr~~~~~lilElEp~~~~~~~----~~~~~~~ll~~i~~~Ir~--sl~l~~il~~ 159 (520)
T 3zq5_A 86 ISSLNPSKLWARVMGDDFVIFDGVFHRNSDGLLVCELEPAYTSDNL----PFLGFYHMANAALNRLRQ--QANLRDFYDV 159 (520)
T ss_dssp HHHTSSEEEEEEETTTEEEEEEEEEEECTTSCEEEEEEECCTTCSC----CCTTHHHHHHHHHHHHHH--SCCHHHHHHH
T ss_pred cccCCcEEEEEeccCCCceeEEEEEEEEcCCEEEEEEEECCCcccc----chHHHHHHHHHHHHHHHh--cCCHHHHHHH
Confidence 445678887763 3456 899999999 99999999999654432 234578899999999999 8899999999
Q ss_pred HHHHHHhhhCCCeEEEEeecCCCCceEEEeecCCCCCCccCCCCCCCCccHHHHHHHHhCCceEeecCCCCCceeeeC--
Q 002210 223 LVNEVSDLTGYDRVMVYKFHEDEHGEVVAECRRPDLEPYLGFHYPATDIPQASRFLIMKNKVRMICDCLAPPVKVIQD-- 300 (953)
Q Consensus 223 ~v~~vr~~~g~DRVmiY~F~~d~~G~viaE~~~~~~~~~lg~~~pa~dip~~ar~ly~~n~~r~i~D~~~~~~~l~~~-- 300 (953)
+|++||++|||||||||||++||+|+||||++.++|+||||+|||++|||+++|+||++|++|+|+|++++|++|++.
T Consensus 160 ~v~evr~ll~~DRVmIYrF~~d~~G~VvAEs~~~~~~s~LGl~~p~~diP~~ar~ly~~~~vr~I~Di~~~pv~l~~~~~ 239 (520)
T 3zq5_A 160 IVEEVRRMTGFDRVMLYRFDENNHGDVIAEDKRDDMEPYLGLHYPESDIPQPARRLFIHNPIRVIPDVYGVAVPLTPAVN 239 (520)
T ss_dssp HHHHHHHHHCCSEEEEEEECTTSCEEEEEEEECTTSCCCTTEEECGGGSCHHHHHHHHHCCEEEESCTTCCCEEEESSSC
T ss_pred HHHHHHHHhCCCEEEEEEEcCCCcEEEEEEEeCCCchhhcCCccChhhhhHHHHHHHHcCCEEEEcCCCCCceeeecccc
Confidence 999999999999999999999999999999999999999999999999999999999999999999999999999974
Q ss_pred CCCCCccccCCccccCCChhHHHHhhhcCCeeEEEEEEEEeCCcccccccccCCCceeEEEeeecCCCCCCChhHHHHHH
Q 002210 301 KKLDQPLSLCGSTLRAPHGCHARYMENMGSIASLVMSVTINEAEDELDNDQEQGRKLWGLVVCHHTSPRFVPFPLRYACE 380 (953)
Q Consensus 301 ~~~~~~ldl~~s~lr~~s~~h~~yl~nmgv~asl~~~i~~~~~~~~~~~~~~~~~~LWGLi~~hh~~pr~~~~~~r~~~~ 380 (953)
+.+++|+||++|+||++||||+|||+||||+|||+|||+++ |||||||+||||+||+|++++|.+|+
T Consensus 240 ~~~~~pldL~~s~lr~~sp~h~eyL~nmgV~AsLvvpI~~~-------------~~LWGLl~~Hh~~pR~w~~~er~~~e 306 (520)
T 3zq5_A 240 PSTNRAVDLTESILRSAYHCHLTFLKNMGVGASLTISLIKD-------------GHLWGLIACHHQTPKVIPFELRKACE 306 (520)
T ss_dssp TTTSSCCCCTTCSSBCCCHHHHHHHHHTTCSEEEEEEEEET-------------TEEEEEEEEEESSCCCCCHHHHHHHH
T ss_pred cccCCcccccccccccCCHHHHHHHHhcCCcEEEEEeEEEC-------------CEEEEEEEEecCCCcCCCHHHHHHHH
Confidence 56789999999999999999999999999999999999998 99999999999999999999999999
Q ss_pred HHHHHHHHhhHHHHHHHHHHHHHHHHHHHHH-HHHhhccCC-CCccccCCcchhhhccCCeEEEEECCeEEEeCCCCCHH
Q 002210 381 FLIQVFGVQVNKEVELSAQLREKHILRTQTV-LCDMLLRDS-PVGIVTQTPNVMDLVKCDGAALYYRGKLWLLGVTPTEE 458 (953)
Q Consensus 381 ~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~-~~~~~~~~~~l~~l~~~dg~a~~~~~~~~~~G~~p~~~ 458 (953)
++++++|++|+++..++....+++..++++. ++.|...+. +.++.++.+++++|++|||+|||++++++++|.||++.
T Consensus 307 ~la~~lsiai~q~e~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~l~~~~~~ll~l~~adG~al~~~~~~~~~G~~P~~~ 386 (520)
T 3zq5_A 307 FFGRVVFSNISAQEDTETFDYRVQLAEHEAVLLDKMTTAADFVEGLTNHPDRLLGLTGSQGAAICFGEKLILVGETPDEK 386 (520)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSSHHHHHHTCHHHHHHTTTCSEEEEEETTEEEEEESCCCHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcChhHHHHhccHHHHhhhcCCeEEEEECCEEEEcCCCCCHH
Confidence 9999999999987776666666666655544 456655544 57888999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhhcCCCeEEEecccCcCCCCCccccccccceEEEEEeCCCCEEEEeccCcccEEeccCCCCCCCCC-C-C
Q 002210 459 QIKDIAEWLLEYHRGSTGLSTDSLVEAGYPGALALGDAVCGIAAVKITSKDFLFWFRSHTAKEIKWGGAKHDSGGK-D-G 536 (953)
Q Consensus 459 ~~~~l~~~l~~~~~~~~~~~t~~l~~~~~p~~~~~~~~~~g~~~~~i~~~~~l~wfR~e~~~~v~WaG~p~~~~~~-~-d 536 (953)
++++|++||...+.+ ++|+||+|.+ +||++..+++.+||||+++|+.++|++|||+|+.++|+|||+|+|++.. + +
T Consensus 387 ~i~~l~~wl~~~~~~-~v~~Td~L~~-~~p~a~~~~~~a~G~lai~ls~~~~l~wFR~e~~~~v~WaG~P~k~~~~~~~~ 464 (520)
T 3zq5_A 387 AVQYLLQWLENREVQ-DVFFTSSLSQ-IYPDAVNFKSVASGLLAIPIARHNFLLWFRPEVLQTVNWGGDPNHAYEATQED 464 (520)
T ss_dssp HHHHHHHHHHHSCCC-SCEEESCGGG-TSGGGGGGHHHHSEEEEEEETTTEEEEEEECCCCEEEEESSCGGGCSEEEEET
T ss_pred HHHHHHHHHHhcCCC-CeeEecchhh-hCcchhhcccccceEEEEEeCCCCEEEEECCCcceEEEeCCCCCCcCCcCCCC
Confidence 999999999988765 6899999998 6999999999999999999999999999999999999999999999762 3 6
Q ss_pred Cc-cccccccccceeeeeeccccCchhhHHHHHHHHHHHHHHHhH
Q 002210 537 GR-KMHPRSSFKAFLEVVKQRSLPWEDVEMDAIHSLQLILRGSLQ 580 (953)
Q Consensus 537 g~-~l~PR~SF~~w~e~v~g~s~pW~~~ei~aa~~L~~il~~~~~ 580 (953)
|. +|+||+||++|+|+|+++|.||...|++++..++..+.+...
T Consensus 465 g~~~l~PR~SF~~W~E~v~g~s~pW~~~e~~~A~~Lr~~l~~vvl 509 (520)
T 3zq5_A 465 GKIELHPRQSFDLWKEIVRLQSLPWQSVEIQSALALKKAIVNLIL 509 (520)
T ss_dssp TEEEEECCCCCCCEEEEECSCCCCCCHHHHHHHHHHHHHHHHHHH
T ss_pred CCccccchhhhhhheeeecCCCCCCCHHHHHHHHHHHHHHHHHHH
Confidence 75 899999999999999999999999999999999776665543
No 3
>3nhq_A Bacteriophytochrome; photoreceptor, PAS, signaling, signaling protei; HET: BLA; 2.55A {Pseudomonas aeruginosa} PDB: 3c2w_A* 3nop_C* 3not_C* 3nou_C* 3g6o_A* 3ibr_A*
Probab=100.00 E-value=3e-109 Score=951.75 Aligned_cols=469 Identities=27% Similarity=0.458 Sum_probs=424.8
Q ss_pred hhhcccCCCCCCccceEEEEecCCceEEEEccChhhhhCCCCCCCCCcccchhhccCCchhh-ccChhhHHHHHHHhccC
Q 002210 67 YLQRVQRGRLIQPFGCMIAVDEQNFTVLGYSENAPEMLDLAPHAVPNIEQQDALTLGIDVRT-LFTSSGAAALQKAANFG 145 (953)
Q Consensus 67 ~~~~i~~~g~iQ~~G~ll~~~~~~~~i~~~S~N~~~~lg~~~~~~~~~~~~~~~~~g~~~~~-~~~~~~~~~~~~~~~~~ 145 (953)
--||||+||+|||||||||+|+ +++|++||+|++++||++| ++|+++.+ +|++.+.+.++.++...
T Consensus 13 ~~EPIh~pG~IQphG~Ll~l~~-~~~I~~~S~N~~~~lg~~~------------~lG~~l~~~ll~~~~~~~l~~~l~~~ 79 (505)
T 3nhq_A 13 EDEPIHVPGAIQPHGALVTLRA-DGMVLAASENIQALLGFVA------------SPGSYLTQEQVGPEVLRMLEEGLTGN 79 (505)
T ss_dssp GGCCTTSCSEECTTEEEEEECT-TSBEEEEETTHHHHHSSCC------------CTTCBCCHHHHHHHHHHHHHHHHSCS
T ss_pred ccccccCCCccCCCeEEEEEcC-CCeEEEEcccHHHHhCccc------------ccCCchhhhhCCHHHHHHHHHHhhcc
Confidence 3589999999999999999999 8999999999999999976 48999999 99999999999988765
Q ss_pred CCCCCCceEEeecCCCceEEEEEEeeCCEEEEEEeeCCCCCCcchhhhhhHHHHHHHHHHHHhccCCCCCHHHHHHHHHH
Q 002210 146 EVNLLNPILIHCKTSGKPFYAILHRIDVGLVIDLEPVNPDDVPVTAAGALKSYKLAAKAISRLQSLPSGNISLLCDVLVN 225 (953)
Q Consensus 146 ~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~ie~Ep~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~l~~~~v~ 225 (953)
.. ..+|+.++ .++++|++++||+++++||||||..+.+. +..+.++++.+++.||++ +.++++||+++|+
T Consensus 80 ~~-~~~p~~~~--~~~~~f~~~~Hr~~~~lilElEp~~~~~~-----~~~~~~~ll~~i~~~Ir~--sl~l~~il~~~v~ 149 (505)
T 3nhq_A 80 GP-WSNSVETR--IGEHLFDVIGHSYKEVFYLEFEIRTADTL-----SITSFTLNAQRIIAQVQL--HNDTASLLSNVTD 149 (505)
T ss_dssp SC-CCCEEEEC--SSSSCEEEEEEEETTEEEEEEEECCSCCC-----CSHHHHHHHHHHHHHHHH--CCCHHHHHHHHHH
T ss_pred cc-cCCcEEEe--cCCceEEEEEEEECCEEEEEEEEcCCccc-----chHHHHHHHHHHHHHHHh--cCCHHHHHHHHHH
Confidence 54 56788774 56789999999999999999999865432 124678999999999999 7899999999999
Q ss_pred HHHhhhCCCeEEEEeecCCCCceEEEeecCCCCCCccCCCCCCCCccHHHHHHHHhCCceEeecCCCCCceeeeC--CCC
Q 002210 226 EVSDLTGYDRVMVYKFHEDEHGEVVAECRRPDLEPYLGFHYPATDIPQASRFLIMKNKVRMICDCLAPPVKVIQD--KKL 303 (953)
Q Consensus 226 ~vr~~~g~DRVmiY~F~~d~~G~viaE~~~~~~~~~lg~~~pa~dip~~ar~ly~~n~~r~i~D~~~~~~~l~~~--~~~ 303 (953)
+||++|||||||||||++||+|+||||++.++|+||||+|||++|||+++|++|++|++|+|+|++++|+|+++. +.+
T Consensus 150 evr~ll~~DRV~IYrF~~d~~G~VvaEs~~~~~~s~LGl~~p~~diP~~ar~ly~~~~vr~I~Dv~~~~~~l~~~~~~~~ 229 (505)
T 3nhq_A 150 ELRRMTGYDRVMAYRFRHDDSGEVVAESRREDLESYLGQRYPASDIPAQARRLYIQNPIRLIADVAYTPMRVFPALNPET 229 (505)
T ss_dssp HHHHHHCCSEEEEEEECTTSCEEEEEEEECTTSCCCTTCEECGGGSCHHHHHHHHHCSEEEESCTTCCCEEEESSEETTT
T ss_pred HHHHHhCCCeEEEEEecCCCCEEEEEEEeCCCchhhcCCccCcccCHHHHHHHHHcCCEEEEcCCCCCcccccccccccc
Confidence 999999999999999999999999999999999999999999999999999999999999999999999999974 567
Q ss_pred CCccccCCccccCCChhHHHHhhhcCCeeEEEEEEEEeCCcccccccccCCCceeEEEeeecCCCCCCChhHHHHHHHHH
Q 002210 304 DQPLSLCGSTLRAPHGCHARYMENMGSIASLVMSVTINEAEDELDNDQEQGRKLWGLVVCHHTSPRFVPFPLRYACEFLI 383 (953)
Q Consensus 304 ~~~ldl~~s~lr~~s~~h~~yl~nmgv~asl~~~i~~~~~~~~~~~~~~~~~~LWGLi~~hh~~pr~~~~~~r~~~~~l~ 383 (953)
++|+||++|+|||+||||+|||+||||+|||+|||+++ |||||||+||||+||+|++++|.+|++++
T Consensus 230 ~~pldLs~~~lR~~sp~h~eyL~nmgV~AsLvvpI~~~-------------~~LWGLl~~Hh~~pR~w~~~er~~~e~la 296 (505)
T 3nhq_A 230 NESFDLSYSVLRSVSPIHCEYLTNMGVRASMSISIVVG-------------GKLWGLFSCHHMSPKLIPYPVRMSFQIFS 296 (505)
T ss_dssp TEECCCTTCTTBCCCHHHHHHHHHHTCCEEEEEEEECS-------------SSEEEEEEEEESSCCCCCHHHHHHHHHHH
T ss_pred CCcccccccccccCCHHHHHHHHhcCCceEEEEEEEEC-------------CEEEEEEEEecCCCCCCCHHHHHHHHHHH
Confidence 89999999999999999999999999999999999998 99999999999999999999999999999
Q ss_pred HHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHhhccCC--CCccccCCcchhhhccCCeEEEEECCeEEEeCCCCCHHHHH
Q 002210 384 QVFGVQVNKEVELSAQLREKHILRTQTVLCDMLLRDS--PVGIVTQTPNVMDLVKCDGAALYYRGKLWLLGVTPTEEQIK 461 (953)
Q Consensus 384 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~l~~l~~~dg~a~~~~~~~~~~G~~p~~~~~~ 461 (953)
+++|++|++....+++..++++.++++.+++++.+.. +.++.++.++++++++|||+|||++++++++|.||++++++
T Consensus 297 ~~ls~al~q~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~l~~~~~~l~~ll~adg~al~~~~~~~~~G~~P~~~~i~ 376 (505)
T 3nhq_A 297 QVCSAIVERLEQGRIAELLRVSTERRLALARRARDADDLFGALAHPDDGIAALIPCDGALVMLGGRTLSIRGDFERQAGN 376 (505)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHCTTTSHHHHTTCSEEEEEETTEEEEESSCCHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCHHHHHHHhhHHHHHHhCCCeEEEEECCeEEecCCCCCHHHHH
Confidence 9999999988777777778888888888888876543 46788889999999999999999999999999999999999
Q ss_pred HHHHHHHhhcCCCeEEEecccCcCCCCCccc---cccccceEEEEEeCC--CCEEEEeccCcccEEeccCCCCCCCC-CC
Q 002210 462 DIAEWLLEYHRGSTGLSTDSLVEAGYPGALA---LGDAVCGIAAVKITS--KDFLFWFRSHTAKEIKWGGAKHDSGG-KD 535 (953)
Q Consensus 462 ~l~~~l~~~~~~~~~~~t~~l~~~~~p~~~~---~~~~~~g~~~~~i~~--~~~l~wfR~e~~~~v~WaG~p~~~~~-~~ 535 (953)
+|++||...+.+ +|+|| +||++.. +++.+||||+++|+. ++|++|||+|+.++|+|||+|+|++. .+
T Consensus 377 ~l~~wl~~~~~~--v~~Td-----~~p~a~~~~~~~~~~~G~lai~ls~~~~~~l~wFR~e~~~~v~WaG~P~k~~~~~~ 449 (505)
T 3nhq_A 377 VLQRLQRDPERD--IYHTD-----NWPQPSEDSPDGGDCCGVLAIRFHRQESGWIFWFRHEEVHRIRWGGKPEKLLTIGP 449 (505)
T ss_dssp HHHHHHTCTTCS--EEEES-----CC-----------CCCEEEEEEEETTTTEEEEEEECSCCCSEEEEESCCCCCCCCT
T ss_pred HHHHHHHhcCCC--eEEeC-----CCcchhhccccccccceEEEEEecCCCCcEEEEEcCCcceEEEeCCCCCCcCCCCC
Confidence 999999988765 89999 5999988 899999999999986 79999999999999999999999976 46
Q ss_pred CCccccccccccceeeeeeccccCchhhHHHHHHHHHHHHHHH
Q 002210 536 GGRKMHPRSSFKAFLEVVKQRSLPWEDVEMDAIHSLQLILRGS 578 (953)
Q Consensus 536 dg~~l~PR~SF~~w~e~v~g~s~pW~~~ei~aa~~L~~il~~~ 578 (953)
+|.+++||+||++|+|+|+++|.||...|++++..++..+.+.
T Consensus 450 ~~~~l~PR~SF~~W~E~v~g~s~pW~~~e~~~A~~Lr~~l~~v 492 (505)
T 3nhq_A 450 SGPRLTPRGSFEAWEEVVRGHSTPWSETDLAIAEKLRLDLMEL 492 (505)
T ss_dssp TCGGGSHHHHHHHHHHHHTTCCCCCCHHHHHHHHHHHHHHHHH
T ss_pred CCCccCchhhhhhheeeecCccCCCCHHHHHHHHHHHHHHHHH
Confidence 7889999999999999999999999999999999997655543
No 4
>3s7o_A Bacteriophytochrome; biliverdin, PAS, GAF, photoreceptor, fluorescent protein; HET: LBV GOL; 1.24A {Deinococcus radiodurans} PDB: 3s7n_A* 3s7p_A* 3s7q_A* 2o9c_A* 2o9b_A* 1ztu_A*
Probab=100.00 E-value=3.7e-81 Score=676.94 Aligned_cols=295 Identities=32% Similarity=0.495 Sum_probs=271.9
Q ss_pred HhhhcccCCCCCCccceEEEEecCCceEEEEccChhhhhCCCCCCCCCcccchhhccCCchhhccChhhHHHHHHHhccC
Q 002210 66 AYLQRVQRGRLIQPFGCMIAVDEQNFTVLGYSENAPEMLDLAPHAVPNIEQQDALTLGIDVRTLFTSSGAAALQKAANFG 145 (953)
Q Consensus 66 ~~~~~i~~~g~iQ~~G~ll~~~~~~~~i~~~S~N~~~~lg~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~ 145 (953)
=--||||+||+|||||||||+|+++++|++||+|++++||++|++ ++|+++.++|++ .++.+++++...
T Consensus 38 Cd~EPIh~pG~IQphG~LL~l~~~~~~I~~~S~N~~~~lg~~~~~----------llG~~l~~ll~~-~~~~l~~~l~~~ 106 (343)
T 3s7o_A 38 CEREPIHIPGSIQPHGALLTADGHSGEVLQMSLNAATFLGQEPTV----------LRGQTLAALLPE-QWPALQAALPPG 106 (343)
T ss_dssp GGGCCTTCCSEECTTSEEEEEETTTCBEEEEETTHHHHHSSCHHH----------HTTCBHHHHSTT-THHHHHHHSCTT
T ss_pred cccccccCCCccCCCeEEEEEECCCCEEEEEcccHHHHhCcChHH----------HcCCCHHHHHhH-HHHHHHHHhccc
Confidence 346899999999999999999999999999999999999998743 799999999999 999999988766
Q ss_pred CCCCCC---ceEEeecCCCceEEEEEEeeCCEEEEEEeeCCCCCCcchhhhhhHHHHHHHHHHHHhccCCCCCHHHHHHH
Q 002210 146 EVNLLN---PILIHCKTSGKPFYAILHRIDVGLVIDLEPVNPDDVPVTAAGALKSYKLAAKAISRLQSLPSGNISLLCDV 222 (953)
Q Consensus 146 ~~~~~~---~~~~~~~~~~~~~~~~~h~~~~~~~ie~Ep~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~l~~~ 222 (953)
+....+ |+.+. .+++|++++||+++++||||||..+.+ .+.++++.+++.||++ +.++++||++
T Consensus 107 ~~~~~~~~~p~~~~---~~~~f~~~~Hr~~~~lilElEp~~~~~--------~~~~~ll~~i~~rIr~--sldl~~ilq~ 173 (343)
T 3s7o_A 107 CPDALQYRATLDWP---AAGHLSLTVHRVGELLILEFEPTEAWD--------STGPHALRNAMFALES--APNLRALAEV 173 (343)
T ss_dssp CCTTCCEEEEECCS---SSSEEEEEEEEETTEEEEEEEEEC------------CHHHHHHHHHHHHHH--CCSHHHHHHH
T ss_pred cccccccCCcEEEc---CCCEEEEEEEEECCEEEEEEEECCCCh--------HHHHHHHHHHHHHHHh--cCCHHHHHHH
Confidence 665666 76663 577999999999999999999986532 2568899999999999 7899999999
Q ss_pred HHHHHHhhhCCCeEEEEeecCCCCceEEEeecCCCCCCccCCCCCCCCccHHHHHHHHhCCceEeecCCCCCceeeeC--
Q 002210 223 LVNEVSDLTGYDRVMVYKFHEDEHGEVVAECRRPDLEPYLGFHYPATDIPQASRFLIMKNKVRMICDCLAPPVKVIQD-- 300 (953)
Q Consensus 223 ~v~~vr~~~g~DRVmiY~F~~d~~G~viaE~~~~~~~~~lg~~~pa~dip~~ar~ly~~n~~r~i~D~~~~~~~l~~~-- 300 (953)
+|+|||++|||||||||||++||+|+||||++.++|+||||+|||++|||+++|++|++|++|+|+|+++.|++|++.
T Consensus 174 tV~eVR~llg~DRVmIYrF~~d~~GeVvAEs~~~~~~s~LGl~~pasdiP~~ar~ly~~~~vr~I~Di~~~pv~l~~~~~ 253 (343)
T 3s7o_A 174 ATQTVRELTGFDRVMLYKFAPDATGEVIAEARREGLHAFLGHRFPASHIPAQARALYTRHLLRLTADTRAAAVPLDPVLN 253 (343)
T ss_dssp HHHHHHHHHCCSEEEEEEECTTSCEEEEEEEECTTCCCCTTCEECGGGSCHHHHHHHHHSCEEEESCTTCCCEEEESSEE
T ss_pred HHHHHHHHhCCCeEEEEEEcCCCCEEEEEEEecCCcccccCCccccccCHHHHHHHHHcCCEEEEeccCCCccccccccc
Confidence 999999999999999999999999999999999999999999999999999999999999999999999999999974
Q ss_pred CCCCCccccCCccccCCChhHHHHhhhcCCeeEEEEEEEEeCCcccccccccCCCceeEEEeeecCCCCCCChhHHHHHH
Q 002210 301 KKLDQPLSLCGSTLRAPHGCHARYMENMGSIASLVMSVTINEAEDELDNDQEQGRKLWGLVVCHHTSPRFVPFPLRYACE 380 (953)
Q Consensus 301 ~~~~~~ldl~~s~lr~~s~~h~~yl~nmgv~asl~~~i~~~~~~~~~~~~~~~~~~LWGLi~~hh~~pr~~~~~~r~~~~ 380 (953)
+.+++|+||++|+||++||||+|||+||||+|||+|||+++ +||||||+|||++||+|++++|.+|+
T Consensus 254 ~~~~~~ldLs~s~lR~~spcH~eyL~nmgV~AsLvvpI~~~-------------~~LWGLL~~Hh~~pR~w~~~er~~~e 320 (343)
T 3s7o_A 254 PQTNAPTPLGGAVLRATSPMHMQYLRNMGVGSSLSVSVVVG-------------GQLWGLIACHHQTPYVLPPDLRTTLE 320 (343)
T ss_dssp TTTTEECCCTTCTTBCCCHHHHHHHHHTTCSEEEEEEEEET-------------TEEEEEEEEEESSCCCCCHHHHHHHH
T ss_pred cccCCcccccccccccCCHHHHHHHHHcCCcEEEEEEEEEC-------------CEEEEEEEEEcCCCcCCCHHHHHHHH
Confidence 56789999999999999999999999999999999999998 99999999999999999999999999
Q ss_pred HHHHHHHHhhHHHHHHH
Q 002210 381 FLIQVFGVQVNKEVELS 397 (953)
Q Consensus 381 ~l~~~~~~~l~~~~~~~ 397 (953)
+|++++|++|+++..++
T Consensus 321 ~la~~lsiaI~~~~~~~ 337 (343)
T 3s7o_A 321 SLGRLLSLQVQVKEALE 337 (343)
T ss_dssp HHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHHHHhhh
Confidence 99999999998766543
No 5
>4e04_A Bacteriophytochrome (light-regulated signal trans histidine kinase), PHYB1; bacteriophytochrome chromophore binding domain; HET: LBV; 1.79A {Rhodopseudomonas palustris}
Probab=100.00 E-value=1e-80 Score=672.99 Aligned_cols=296 Identities=33% Similarity=0.546 Sum_probs=272.7
Q ss_pred hhhcccCCCCCCccceEEEEecCCceEEEEccChhhhhCCCCCCCCCcccchhhccCCchhhccChhhHHHHHHHhccCC
Q 002210 67 YLQRVQRGRLIQPFGCMIAVDEQNFTVLGYSENAPEMLDLAPHAVPNIEQQDALTLGIDVRTLFTSSGAAALQKAANFGE 146 (953)
Q Consensus 67 ~~~~i~~~g~iQ~~G~ll~~~~~~~~i~~~S~N~~~~lg~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~ 146 (953)
--||||+||+|||||||||+| ++++|+++|+|++++||++|++ ++|+++.++|++...+.+++++....
T Consensus 16 ~rEpIh~~G~IQphG~Ll~~~-~~~~I~~~S~N~~~~lg~~~~~----------~lG~~l~~ll~~~~~~~l~~~l~~~~ 84 (327)
T 4e04_A 16 DDEPIHIPGAIQPHGLLLALA-ADMTIVAGSDNLPELTGLAIGA----------LIGRSAADVFDSETHNRLTIALAEPG 84 (327)
T ss_dssp GGCCTTCCSEECTTSEEEEEC-TTCBEEEEETTHHHHHSCCHHH----------HTTCBHHHHBCHHHHHHHHHHHHSCS
T ss_pred ccccccCCCccCCCeEEEEEc-CCCeEEEEcccHHHHhCCChHh----------hcCCCHHHHcCHHHHHHHHHHhhccc
Confidence 358999999999999999999 8999999999999999998743 69999999999999999999887766
Q ss_pred CCCCCceEEeec--CCCceEEEEEEeeCCEEEEEEeeCCCCCCcchhhhhhHHHHHHHHHHHHhccCCCCCHHHHHHHHH
Q 002210 147 VNLLNPILIHCK--TSGKPFYAILHRIDVGLVIDLEPVNPDDVPVTAAGALKSYKLAAKAISRLQSLPSGNISLLCDVLV 224 (953)
Q Consensus 147 ~~~~~~~~~~~~--~~~~~~~~~~h~~~~~~~ie~Ep~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~l~~~~v 224 (953)
....+|+.+++. .++++|++++||+++++|+||||..... . .....++++.+++.||++ +.++++||+++|
T Consensus 85 ~~~~~p~~~~~~~~~~~~~f~~~~Hr~~~~lilElEp~~~~~--~---~~~~~~~ll~~i~~rIr~--sldl~~il~~av 157 (327)
T 4e04_A 85 AAVGAPIAVGFTMPDGERAFNGSWHRHDQLVFLELEPPQRDV--R---YPQAFFRSVRSAIRRLQA--AETLESACAAAA 157 (327)
T ss_dssp CCSEEEEEEEBCCTTCCCEEEEEEEEETTEEEEEEECCCCCS--S---CCCCHHHHHHHHHHHHHH--CCSHHHHHHHHH
T ss_pred cccCCcEEEEeeccCCCceEEEEEEEECCEEEEEEEECCCcc--c---chHHHHHHHHHHHHHHHh--cCCHHHHHHHHH
Confidence 666788888643 4677999999999999999999983321 1 112468899999999999 779999999999
Q ss_pred HHHHhhhCCCeEEEEeecCCCCceEEEeecCCCCCCccCCCCCCCCccHHHHHHHHhCCceEeecCCCCCceeeeC--CC
Q 002210 225 NEVSDLTGYDRVMVYKFHEDEHGEVVAECRRPDLEPYLGFHYPATDIPQASRFLIMKNKVRMICDCLAPPVKVIQD--KK 302 (953)
Q Consensus 225 ~~vr~~~g~DRVmiY~F~~d~~G~viaE~~~~~~~~~lg~~~pa~dip~~ar~ly~~n~~r~i~D~~~~~~~l~~~--~~ 302 (953)
+|||++|||||||||||++||+|+||||++.++|+||||+|||++|||+++|++|++|++|+|+|+++.||+|++. +.
T Consensus 158 ~evr~llg~DRVmIYrF~~d~~G~VvAEs~~~~~~s~LGl~~p~~dip~~ar~ly~~~~vr~I~Di~~~~v~l~~~~~~~ 237 (327)
T 4e04_A 158 QEVREITGFDRVMIYRFASDFSGEVIAEDRCAEVESYLGLHFPASDIPAQARRLYTINPVRIIPDINYRPVPVTPDLNPR 237 (327)
T ss_dssp HHHHHHHCCSEEEEEEECTTSCEEEEEEEECTTSCCCTTCEECGGGSCHHHHHHHHHSCEEEESCTTCCCEEEESCCCTT
T ss_pred HHHHHHHCCCeEEEEEEcCCCCEEEEEEEecCCCcCccCCccccccchHHHHHHHHcCCEEEEeCCCCCccccccccccc
Confidence 9999999999999999999999999999999999999999999999999999999999999999999999999974 56
Q ss_pred CCCccccCCccccCCChhHHHHhhhcCCeeEEEEEEEEeCCcccccccccCCCceeEEEeeecCCCCCCChhHHHHHHHH
Q 002210 303 LDQPLSLCGSTLRAPHGCHARYMENMGSIASLVMSVTINEAEDELDNDQEQGRKLWGLVVCHHTSPRFVPFPLRYACEFL 382 (953)
Q Consensus 303 ~~~~ldl~~s~lr~~s~~h~~yl~nmgv~asl~~~i~~~~~~~~~~~~~~~~~~LWGLi~~hh~~pr~~~~~~r~~~~~l 382 (953)
+++|+||++|+||++||||+|||+||||+|||+|||+++ |||||||+||||+||+|++++|.+|++|
T Consensus 238 ~~~~ldls~s~lr~~spcH~eyL~nmgV~AsLvvpI~~~-------------~~LWGLl~~Hh~~pR~w~~~er~~~e~l 304 (327)
T 4e04_A 238 TGRPIDLSFAILRSVSPVHLEYMRNIGMHGTMSISILRG-------------ERLWGLIACHHRKPNYVDLEVRQACELV 304 (327)
T ss_dssp TSSCCCCTTCTTBCCCHHHHHHHHHTTCCEEEEEEEEET-------------TEEEEEEEEEESSCCCCCHHHHHHHHHH
T ss_pred cCCcccccccccccCCHHHHHHHHHhCCcEEEEEEEEEC-------------CEEEEEEEEecCCCcCCCHHHHHHHHHH
Confidence 789999999999999999999999999999999999998 9999999999999999999999999999
Q ss_pred HHHHHHhhHHH
Q 002210 383 IQVFGVQVNKE 393 (953)
Q Consensus 383 ~~~~~~~l~~~ 393 (953)
++++|++|++.
T Consensus 305 a~~lsiaI~~~ 315 (327)
T 4e04_A 305 AQVLAWQIGVM 315 (327)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 99999999654
No 6
>2ool_A Sensor protein; bacteriophytochrome, photoconversion, photoreceptor, biliver signaling protein; HET: LBV; 2.20A {Rhodopseudomonas palustris} SCOP: d.110.2.1 d.110.3.9
Probab=100.00 E-value=1.1e-77 Score=658.19 Aligned_cols=296 Identities=33% Similarity=0.579 Sum_probs=273.8
Q ss_pred hhcccCCCCCCccceEEEEecCCceEEEEccChhhhhCCCCCCCCCcccchhhccCCchhhccChhhHHHHHHHhccCCC
Q 002210 68 LQRVQRGRLIQPFGCMIAVDEQNFTVLGYSENAPEMLDLAPHAVPNIEQQDALTLGIDVRTLFTSSGAAALQKAANFGEV 147 (953)
Q Consensus 68 ~~~i~~~g~iQ~~G~ll~~~~~~~~i~~~S~N~~~~lg~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~ 147 (953)
-||||+||+|||||||||+|+++++|++||+|++++||++|++ ++|+++.++|++...+.+++.+...+.
T Consensus 30 ~EpIh~~g~IQp~G~Ll~~~~~~~~i~~~S~N~~~~lg~~~~~----------llG~~l~~ll~~~~~~~l~~~l~~~~~ 99 (337)
T 2ool_A 30 REPIHIPGAIQPHGYLFVVSETDLRIASVSANVEDLLRQPPAS----------LLNVPIAHYLTAASAARLTHALHGGDP 99 (337)
T ss_dssp GSCTTCCSEECTTSEEEEECTTTCBEEEEETTHHHHHSSCGGG----------GTTCBGGGGBCHHHHHHHHHHHCC---
T ss_pred cCcCcCCCccCCCEEEEEEECCCCEEEEEehhHHHHHCcCHHH----------HcCCCHHHHcCHHHHHHHHHHHhcCCc
Confidence 5799999999999999999998999999999999999998865 689999999999999999999877777
Q ss_pred CCCCceEEeecC--CCceEEEEEEeeCCEEEEEEeeCCCCCCcchhhhhhHHHHHHHHHHHHhccCCCCCHHHHHHHHHH
Q 002210 148 NLLNPILIHCKT--SGKPFYAILHRIDVGLVIDLEPVNPDDVPVTAAGALKSYKLAAKAISRLQSLPSGNISLLCDVLVN 225 (953)
Q Consensus 148 ~~~~~~~~~~~~--~~~~~~~~~h~~~~~~~ie~Ep~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~l~~~~v~ 225 (953)
...+|+.+++.. .+++|++++||+++++|+||||..+.+. ..+.++++.+++.||++ +.++++||+++|+
T Consensus 100 ~~~~p~~~~~~~~~~~~~f~~~~Hr~~~~li~ElE~~~~~~~------~~~~~~ll~~i~~~Ir~--sl~l~~il~~tv~ 171 (337)
T 2ool_A 100 AAINPIRLDVVTPDGERAFNGILHRHDSIVILELEPRDESRY------TNEFFRSVRVAIRRLQT--AADLPTACWIAAS 171 (337)
T ss_dssp -CCCSEEEEEEETTEEEEEEEEEEEETTEEEEEEECCCCCSC------HHHHHHHHHHHHHHHHT--CCSHHHHHHHHHH
T ss_pred cccCcEEEEEeccCCCeEEEEEEEEcCCeEEEEEEecccchh------hHHHHHHHHHHHHHHHh--cCCHHHHHHHHHH
Confidence 777898887754 3678999999999999999999865432 34678899999999999 8899999999999
Q ss_pred HHHhhhCCCeEEEEeecCCCCceEEEeecCCCCCCccCCCCCCCCccHHHHHHHHhCCceEeecCCCCCceeeeC--CCC
Q 002210 226 EVSDLTGYDRVMVYKFHEDEHGEVVAECRRPDLEPYLGFHYPATDIPQASRFLIMKNKVRMICDCLAPPVKVIQD--KKL 303 (953)
Q Consensus 226 ~vr~~~g~DRVmiY~F~~d~~G~viaE~~~~~~~~~lg~~~pa~dip~~ar~ly~~n~~r~i~D~~~~~~~l~~~--~~~ 303 (953)
+||++|||||||||||++||+|+||||++.++|+||||+|||++|||+++|++|++|++|+|+|+++.|++|++. +.+
T Consensus 172 evr~ll~~DRV~IYrF~~d~~G~VvaEs~~~~~~s~lGl~~p~~dip~~ar~ly~~~~vr~I~Di~~~~v~~~~~~~~~~ 251 (337)
T 2ool_A 172 EVRRITGFDRIKVYQFAADWSGQVIAEDRDSGIPSLLDFHFPSSDIPAQSRALYTINPVRIIPDIGYRPSPLVPDINPRL 251 (337)
T ss_dssp HHHHHHCCSEEEEEEECTTSCEEEEEEEECTTCCCCTTCEECGGGSCHHHHHHHHHSCEEEESCTTCCCEEEESCCCTTT
T ss_pred HHHHHhCCCeeEEEEEcCCCCEEEEEEEccCCCccccCCCCCccccHHHHHHHHHhCCEEEEEccCCCcccccccccccc
Confidence 999999999999999999999999999999999999999999999999999999999999999999999999975 567
Q ss_pred CCccccCCccccCCChhHHHHhhhcCCeeEEEEEEEEeCCcccccccccCCCceeEEEeeecCCCCCCChhHHHHHHHHH
Q 002210 304 DQPLSLCGSTLRAPHGCHARYMENMGSIASLVMSVTINEAEDELDNDQEQGRKLWGLVVCHHTSPRFVPFPLRYACEFLI 383 (953)
Q Consensus 304 ~~~ldl~~s~lr~~s~~h~~yl~nmgv~asl~~~i~~~~~~~~~~~~~~~~~~LWGLi~~hh~~pr~~~~~~r~~~~~l~ 383 (953)
++||||++|+||++||||+|||+||||+|||+|||+++ +||||||+||||+||+|++++|.+|++|+
T Consensus 252 ~~~ldl~~~~lr~~sp~h~eyL~nm~v~AsLvvpI~~~-------------~~LWGLl~~Hh~~pR~w~~~e~~~~e~la 318 (337)
T 2ool_A 252 GGPIDLSFSVLRSVSPTHLEYMVNMGMHAAMSISIVRD-------------NRLWGMISCHNLTPRFVSYEVRQACELIA 318 (337)
T ss_dssp CSSCCCTTCTTBCCCHHHHHHHHHHTCCEEEEEEEEET-------------TEEEEEEEEEESSCCCCCHHHHHHHHHHH
T ss_pred CCCcccccccccCCCHHHHHHHHHcCccccEEEEEEEC-------------CeeEEEEEEecCCCCCCCHHHHHHHHHHH
Confidence 99999999999999999999999999999999999998 99999999999999999999999999999
Q ss_pred HHHHHhhHHHH
Q 002210 384 QVFGVQVNKEV 394 (953)
Q Consensus 384 ~~~~~~l~~~~ 394 (953)
+++|++|++..
T Consensus 319 ~~l~iai~q~e 329 (337)
T 2ool_A 319 QVLTWQIGVLE 329 (337)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 99999996543
No 7
>4glq_A Methyl-accepting chemotaxis protein; chromophore, phytochrome, cyanobacteriochrome, phycoviolobil bilin, BILI-protein; HET: PVN; 1.77A {Thermosynechococcus elongatus} PDB: 4fof_A*
Probab=100.00 E-value=1.5e-34 Score=290.62 Aligned_cols=152 Identities=20% Similarity=0.239 Sum_probs=138.7
Q ss_pred HHHhccCCCCCHHHHHHHHHHHHHhhhCCCeEEEEeecCCCCceEEEeecCCCCCCccCCCCCCCCccHHHHHHHHhCCc
Q 002210 205 ISRLQSLPSGNISLLCDVLVNEVSDLTGYDRVMVYKFHEDEHGEVVAECRRPDLEPYLGFHYPATDIPQASRFLIMKNKV 284 (953)
Q Consensus 205 ~~~l~~~~~~~~~~l~~~~v~~vr~~~g~DRVmiY~F~~d~~G~viaE~~~~~~~~~lg~~~pa~dip~~ar~ly~~n~~ 284 (953)
..+|++ +.|++++++++|++||+++|+||||||+|++||+|+|++|++.++++|++|.+||++|||.+++++|.+|++
T Consensus 3 a~~Ir~--sldl~~il~~~v~~v~~~l~~DRv~Iy~f~~d~~g~vvaE~~~~~~~s~lg~~~~~~~~~~~~~~~~~~g~~ 80 (171)
T 4glq_A 3 AVQLSE--LRDRQAIFETLVAKGRELLACDRVIVYAFDDNYVGTVVAESVAEGWPQARDQVIEDPCFREHWVEAYRQGRI 80 (171)
T ss_dssp -----C--TTHHHHHHHHHHHHHHHHHTCSEEEEEEECTTCCEEEEEEEECTTSCCCTTCEECCTHHHHHTHHHHHTTCC
T ss_pred HHHHhh--cCCHHHHHHHHHHHHHHHHCCCeEEEEEEeCCCCeEEEEEEcCCCCccccCCccCccccHHHHHHHHHcCCE
Confidence 467888 889999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eEeecCCCCCceeeeCCCCCCccccCCccccCCChhHHHHhhhcCCeeEEEEEEEEeCCcccccccccCCCceeEEEeee
Q 002210 285 RMICDCLAPPVKVIQDKKLDQPLSLCGSTLRAPHGCHARYMENMGSIASLVMSVTINEAEDELDNDQEQGRKLWGLVVCH 364 (953)
Q Consensus 285 r~i~D~~~~~~~l~~~~~~~~~ldl~~s~lr~~s~~h~~yl~nmgv~asl~~~i~~~~~~~~~~~~~~~~~~LWGLi~~h 364 (953)
++|+|++.. +++|||.+||++|||+|+|++||+++ |+|||+|+||
T Consensus 81 ~~I~Dv~~~----------------------~~~~~~~~~l~~~~v~S~L~vPi~~~-------------~~l~GlL~~~ 125 (171)
T 4glq_A 81 QATTDIFKA----------------------GLTECHLNQLRPLKVRANLVVPMVID-------------DQLFGLLIAH 125 (171)
T ss_dssp EEESCGGGT----------------------TCCHHHHHHHGGGTEEEEEEEEEEET-------------TEEEEEEEEE
T ss_pred EEEcCcCcC----------------------CCCHHHHHHHHhcCCcEEEEEEEEEC-------------CEEEEEEEEE
Confidence 999996543 35699999999999999999999998 9999999999
Q ss_pred cCC-CCCCChhHHHHHHHHHHHHHHhhHHH
Q 002210 365 HTS-PRFVPFPLRYACEFLIQVFGVQVNKE 393 (953)
Q Consensus 365 h~~-pr~~~~~~r~~~~~l~~~~~~~l~~~ 393 (953)
||+ ||.|+..++.+++.++.++|+.|.+.
T Consensus 126 ~~~~~r~w~~~ei~ll~~lA~ql~iAi~qa 155 (171)
T 4glq_A 126 QASEPRQWQEIEIDQFSELASTGSLVLERL 155 (171)
T ss_dssp EESSCCCCCHHHHHHHHHHHHHHHHHHHHH
T ss_pred eCCCCCCCCHHHHHHHHHHHHHHHHHHHHH
Confidence 985 99999999999999999888887543
No 8
>2k2n_A Sensor protein, SYB-CPH1(GAF); phytochrome, GAF domain, phycocyanobilin, PCB, bacteriophytochrome, cyanobacterial phytochrome, kinase; HET: CYC; NMR {Synechococcus SP} SCOP: d.110.2.1 PDB: 2kli_A* 2koi_A*
Probab=99.95 E-value=3e-28 Score=245.26 Aligned_cols=164 Identities=33% Similarity=0.555 Sum_probs=153.8
Q ss_pred HHHHHHHHHHHHHhhhCCCeEEEEeecCCCCceEEEeecCCC-CCCccCCCCCCCCccHHHHHHHHhCCceEeecCCCCC
Q 002210 216 ISLLCDVLVNEVSDLTGYDRVMVYKFHEDEHGEVVAECRRPD-LEPYLGFHYPATDIPQASRFLIMKNKVRMICDCLAPP 294 (953)
Q Consensus 216 ~~~l~~~~v~~vr~~~g~DRVmiY~F~~d~~G~viaE~~~~~-~~~~lg~~~pa~dip~~ar~ly~~n~~r~i~D~~~~~ 294 (953)
++++++++++++++++|+|||+||+|++|++|++++|++.++ +++++|.+||++|+|.+++.+|.++++|+|+|++..+
T Consensus 1 l~~il~~~~~~~~~~l~~dr~~i~~~~~~~~~~~~~e~~~~~~~~~~~g~~~~~~~~p~~~~~~~~~~~~~~i~d~~~~~ 80 (172)
T 2k2n_A 1 LDQILRATVEEVRAFLGTDRVKVYRFDPEGHGTVVAEARGGERLPSLLGLTFPAGDIPEEARRLFRLAQVRVIVDVEAQS 80 (172)
T ss_dssp CHHHHHHHHHHHHHHHCCSEEEEEECCTTSCCEEEEEEESSTTSCCCTTCBCCTTCSCSHHHHHHHHTCCEECCCGGGCC
T ss_pred CHHHHHHHHHHHHHHhCCCeEEEEEECCCCCEEEEEEEecCCCCccccCCccCcccCcHHHHHHHHhCCeEEEeeccccc
Confidence 478999999999999999999999999999999999999884 7899999999999999999999999999999999988
Q ss_pred ceeee--CCCCCCccccCCccccCCChhHHHHhhhcCCeeEEEEEEEEeCCcccccccccCCCceeEEEeeecCCCCCCC
Q 002210 295 VKVIQ--DKKLDQPLSLCGSTLRAPHGCHARYMENMGSIASLVMSVTINEAEDELDNDQEQGRKLWGLVVCHHTSPRFVP 372 (953)
Q Consensus 295 ~~l~~--~~~~~~~ldl~~s~lr~~s~~h~~yl~nmgv~asl~~~i~~~~~~~~~~~~~~~~~~LWGLi~~hh~~pr~~~ 372 (953)
+.+++ ...+++|+.++....++.+|||.+|++++|++|.|++||+.+ |++||+|.|||+.||.|+
T Consensus 81 ~g~v~~~~~~~~~~~~i~d~~~~~~~~~~~~~~~~~~~~s~l~vPi~~~-------------~~l~G~l~~~~~~~~~~~ 147 (172)
T 2k2n_A 81 RSISQPESWGLSARVPLGEPLQRPVDPCHVHYLKSMGVASSLVVPLMHH-------------QELWGLLVSHHAEPRPYS 147 (172)
T ss_dssp CCCSCCCSCCCSSCCCCCSSSSCCCCHHHHHHHHTTTCSEEEECCCSCS-------------SCCCEEEEEEECSCCCCC
T ss_pred cccccccccccCCceeccchhhcCCCHHHHHHHHhcCCeEEEEEEEEEC-------------CEEEEEEEEEeCCCCCCC
Confidence 88764 356789999999999999999999999999999999999977 999999999999999999
Q ss_pred hhHHHHHHHHHHHHHHhhHH
Q 002210 373 FPLRYACEFLIQVFGVQVNK 392 (953)
Q Consensus 373 ~~~r~~~~~l~~~~~~~l~~ 392 (953)
..++..++.++.++|+.|..
T Consensus 148 ~~e~~~l~~la~~~a~ai~~ 167 (172)
T 2k2n_A 148 QEELQVVQLLADQVSIAIAQ 167 (172)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 99999999999988887753
No 9
>2lb5_A Sensor histidine kinase; PCB, transferase, GAF domain, phosphoprotein; HET: CYC; NMR {Synechococcus SP} PDB: 2lb9_A*
Probab=99.95 E-value=4.9e-27 Score=244.00 Aligned_cols=182 Identities=31% Similarity=0.505 Sum_probs=154.8
Q ss_pred HHHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHhhhCCCeEEEEeecCCCCceEEEeecCC-CCCCccCCCCCCCCccHH
Q 002210 196 KSYKLAAKAISRLQSLPSGNISLLCDVLVNEVSDLTGYDRVMVYKFHEDEHGEVVAECRRP-DLEPYLGFHYPATDIPQA 274 (953)
Q Consensus 196 ~~~~~~~~~~~~l~~~~~~~~~~l~~~~v~~vr~~~g~DRVmiY~F~~d~~G~viaE~~~~-~~~~~lg~~~pa~dip~~ 274 (953)
+..+++.++..+|.+ +.+++++++++++++++++|+|||+||.|++|++|++++|++.+ ++++++|.+||.+|+|.+
T Consensus 13 ~~~~~L~~i~~~i~~--~~dl~~il~~~~~~l~~~l~~dr~~i~~~d~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~p~~ 90 (208)
T 2lb5_A 13 SRDALINRITHQIRQ--SLELDQILRATVEEVRAFLGTDRVKVYRFDPEGHGTVVAEARGGERLPSLLGLTFPAGDIPEE 90 (208)
T ss_dssp --------------------CHHHHHHHHHHHHHHHCCSEEEEEECCTTSEEEEEEEEESSCCSCCCTTCEEEGGGCCSH
T ss_pred HHHHHHHHHHHHHHH--cCCHHHHHHHHHHHHHHHHCCCEEEEEEEcCCCCEEEEEEEecCCCCccccCCcCChhhCcHH
Confidence 445666778888888 77999999999999999999999999999999999999999987 578999999999999999
Q ss_pred HHHHHHhCCceEeecCCCCCceeee--CCCCCCccccCCccccCCChhHHHHhhhcCCeeEEEEEEEEeCCccccccccc
Q 002210 275 SRFLIMKNKVRMICDCLAPPVKVIQ--DKKLDQPLSLCGSTLRAPHGCHARYMENMGSIASLVMSVTINEAEDELDNDQE 352 (953)
Q Consensus 275 ar~ly~~n~~r~i~D~~~~~~~l~~--~~~~~~~ldl~~s~lr~~s~~h~~yl~nmgv~asl~~~i~~~~~~~~~~~~~~ 352 (953)
++.+|..+++|+|.|+...++.+++ ...+++|++++....++.+|||.+|++++|++|.|++||+.+
T Consensus 91 ~~~~~~~~~~~~i~d~~~~~~~~~~~~~~~~~~~i~i~d~~~~~~~~~~~~~l~~~~~~S~l~vPi~~~----------- 159 (208)
T 2lb5_A 91 ARRLFRLAQVRVIVDVEAQSRSISQPESWGLSARVPLGEPLQRPVDPCHVHYLKSMGVASSLVVPLMHH----------- 159 (208)
T ss_dssp HHHHHHHTCCCEECCGGGCCCCCCCSSCCCCCSCCCCCSCSSCCCCHHHHHHHHHTTCSEEEEEEEEET-----------
T ss_pred HHHHHHhCCeEEEeccccccccccccccccccccccccchhhccCCHHHHHHHHhcCCcEEEEEEEEEC-----------
Confidence 9999999999999999998887764 346789999999999999999999999999999999999988
Q ss_pred CCCceeEEEeeecCCCCCCChhHHHHHHHHHHHHHHhhHH
Q 002210 353 QGRKLWGLVVCHHTSPRFVPFPLRYACEFLIQVFGVQVNK 392 (953)
Q Consensus 353 ~~~~LWGLi~~hh~~pr~~~~~~r~~~~~l~~~~~~~l~~ 392 (953)
|++||+|.|||+.||.|+..++.+++.++.++|+.|..
T Consensus 160 --~~l~GvL~~~~~~~~~~~~~e~~ll~~la~~~a~ai~~ 197 (208)
T 2lb5_A 160 --QELWGLLVSHHAEPRPYSQEELQVVQLLADQVSIAIAQ 197 (208)
T ss_dssp --TEEEEEEEEEESCCCCCCHHHHHHHHHHHHHHHHHHHH
T ss_pred --CEeEEEEEEeeCCCCCCCHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999888754
No 10
>3ewk_A Sensor protein; PAS domain, alpha/beta fold, kinase, phosphoprotein, transfe flavoprotein; HET: FAD; 2.34A {Methylococcus capsulatus}
Probab=99.94 E-value=2.4e-25 Score=234.41 Aligned_cols=221 Identities=13% Similarity=0.047 Sum_probs=180.5
Q ss_pred cEEEEcCCCcEEecCHHHHHHhCCCcchhcCCCccccccCCcHHHHHHHHHHHhcccceEEEEEEEcccCCCCCEEEEEE
Q 002210 623 PILAVDASGNVNGWNSKAAELTGLTVDQAIGTALVDLVAGDSVDVVKNMLSSAFLEERNVEIKLRAFGPRETSGPVILVV 702 (953)
Q Consensus 623 ~I~~~D~dg~i~~~N~a~~~l~G~~~~eliG~~~~dl~~~~~~~~~~~~l~~~l~~~~~~e~~~~~~~~~~dG~~~~v~v 702 (953)
.|+++|.+|+|+++|+++++++||+.++++|+++..+.++.........+...+..+.....++.. .++||..+|+.+
T Consensus 1 ~i~i~D~~g~i~~~N~a~~~l~Gy~~~el~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~--~~~dG~~~~~~~ 78 (227)
T 3ewk_A 1 LVSITDLQGRILYANDNFCAVSRYGREELVGQDHRIVNSGYHGKAYIRDMWRTISRGNIWQGEFCN--RRKDGTRYWVDS 78 (227)
T ss_dssp CEEEEETTCBEEEECHHHHHHTTCCHHHHTTSBGGGGCCSCSCHHHHHHHHHHHTTTCCEEEEEEE--ECSSSCEEEEEE
T ss_pred CEEEECCCCcEEehHHHHHHHHCcCHHHHcCCCHHHcCCCCCCHHHHHHHHHHHHcCCeEEEEEEE--EcCCCCEEeeee
Confidence 478899999999999999999999999999999887766555444444444555445455555444 567999999999
Q ss_pred EEEEeecCCCCEEEEEEEEEecchhHHHHHHHHHHHHHHHHHHhCCCCCCCCeEeecCCccEEehhHHHHHHhCCChhhh
Q 002210 703 NACCTQDTKENVIGVCFVGQDITGQKLVMDKYTRIQGDYVGIVSSPSALIPPIFMTDEDGRCLEWNDGMEKLSGLKREEA 782 (953)
Q Consensus 703 ~~~pi~d~~g~v~gvv~v~~DITerk~~E~~L~~se~~~~~i~e~~~~li~~I~~~D~~G~i~~~N~a~~~l~G~~~eel 782 (953)
+..|+++.+|.+.+++++.+|||++|++|++|++ ++.+++++++ +|+++|.+|+|+++|+++++++||+.+|+
T Consensus 79 ~~~p~~d~~g~~~~~~~~~~DIT~~k~~e~~l~~----~~~~~~~~~~---~i~~~d~~g~i~~~N~~~~~~~G~~~~e~ 151 (227)
T 3ewk_A 79 TIVPLMDNAGKPRQYISIRRDITAQKEAEAQLAR----LKQAMDANSE---MILLTDRAGRIIYANPALCRFSGMAEGEL 151 (227)
T ss_dssp EEEEEECSSSCEEEEEEEEEECTTTTHHHHHHHH----HHHHHHTCCS---EEEEECTTSCEEEECHHHHHHHTCCTHHH
T ss_pred EEEEEEcCCCCEEEEEEEEEehhhHHHHHHHHHH----HHHHHhcCcC---eEEEEcCCCcEEEEchHHHHHhCCCHHHH
Confidence 9999999999999999999999999999999864 4567788877 89999999999999999999999999999
Q ss_pred hcccccccccccccccccccCcchHHHHHHHHHHHhcCCCcceEEEEEEccCCC------EEEEEEEEEEeecCCCCEEE
Q 002210 783 IERMLIGEVFTVKNFGCRVKNHDTLTKLRIVMNKVISGQDADKILFGFFDQQGK------YVEALLSANKRTNAEGKISG 856 (953)
Q Consensus 783 iGk~~~~~~~~~~~~~~~l~~~~~~~~~~~~l~~~~~g~~~~~~e~~~~~kdG~------~~~v~~s~~pi~d~~G~i~g 856 (953)
+|++... +.++. ....+...+...+..+..+..++..++++|+ .+|+.++..|++|.+|+++|
T Consensus 152 ~g~~~~~-l~~~~----------~~~~~~~~~~~~~~~~~~~~~e~~~~~k~G~~~~dg~~~~~~~~~~pi~d~~g~~~~ 220 (227)
T 3ewk_A 152 LGQSPSI-LDSPL----------ADQETLAAMQEALQAGQPWSGRLLNRRRTGPAPHDAEDYWAEISTTPIHTDGNGLVG 220 (227)
T ss_dssp HSSCGGG-GBCTT----------SCHHHHHHHHHHHHHTCCEECCEEEEEECCSSSSCEEEEEEEEEEEEEECSSSCEEE
T ss_pred cCCChhh-ccCCC----------CCHHHHHHHHHHHHcCCceeEEEEEECCCCCcCcccceEEEEEEEEEEECCCCCEEE
Confidence 9998753 22221 1112344455556666677788888999997 89999999999999999999
Q ss_pred EEEEEEe
Q 002210 857 ILCFLHV 863 (953)
Q Consensus 857 ~v~v~~D 863 (953)
++++.+|
T Consensus 221 ~v~i~~D 227 (227)
T 3ewk_A 221 YVQIQHD 227 (227)
T ss_dssp EEEEEEC
T ss_pred EEEEecC
Confidence 9999987
No 11
>4f3l_A Mclock, circadian locomoter output cycles protein kaput; BHLH, PAS, circadian rhythm proteins, transcription-activato; 2.27A {Mus musculus}
Probab=99.78 E-value=3.6e-18 Score=192.46 Aligned_cols=236 Identities=12% Similarity=0.060 Sum_probs=167.6
Q ss_pred HHHHHHhcCccEEEEcCCCcEEecCHHHHHHhCCCcchhcCCCccccccCCcHHHHHHHHHHHhc-----------ccce
Q 002210 613 MVRLIETAAVPILAVDASGNVNGWNSKAAELTGLTVDQAIGTALVDLVAGDSVDVVKNMLSSAFL-----------EERN 681 (953)
Q Consensus 613 l~~lle~~~~~I~~~D~dg~i~~~N~a~~~l~G~~~~eliG~~~~dl~~~~~~~~~~~~l~~~l~-----------~~~~ 681 (953)
...++++++..++++|.+|+|+|+|+++.+++||+.++++|+++.+++||++.+.+...+..... ....
T Consensus 88 ~~~~l~a~~~~i~v~~~~G~i~yvs~~~~~~lGy~~~el~g~~~~~~ihp~D~~~~~~~l~~~~~~~~~~~~~~~~~~~~ 167 (361)
T 4f3l_A 88 TQLMLEALDGFFLAIMTDGSIIYVSESVTSLLEHLPSDLVDQSIFNFIPEGEHSEVYKILSTHLLESDSLTPEYLKSKNQ 167 (361)
T ss_dssp HHHHHHHTTEEEEEEETTSBEEEECTTHHHHHCCCHHHHTTSBGGGGSCGGGHHHHHHHHHHCCCCCCSSSCGGGCGGGE
T ss_pred HHHHHHhcCceEEEEcCCccEEEEechhhhhcCCCHHHhcCCcHHHhcCHHHHHHHHHHhccCCCCCCCCCcccccccCc
Confidence 34578999999999999999999999999999999999999999999999999988887775431 1111
Q ss_pred EEEEEEEcccC----CCCCEEEEEEEEEEee---------------------cCCCCEEEEEEEEEecchhHHHHHHHHH
Q 002210 682 VEIKLRAFGPR----ETSGPVILVVNACCTQ---------------------DTKENVIGVCFVGQDITGQKLVMDKYTR 736 (953)
Q Consensus 682 ~e~~~~~~~~~----~dG~~~~v~v~~~pi~---------------------d~~g~v~gvv~v~~DITerk~~E~~L~~ 736 (953)
..+..+..... ......++........ ...+...+++++.++++.+...|..
T Consensus 168 ~~f~cr~~~~~~~~~~~~~y~~i~~~G~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~lvai~r~~~~~~~~e~~--- 244 (361)
T 4f3l_A 168 LEFCCHMLRGTIDPKEPSTYEYVRFIGNFKSLTSVSTSTHNGFEGTIQRTHRPSYEDRVCFVATVRLATPQFIKEMC--- 244 (361)
T ss_dssp EEEEEEEECCCSCSSSCCCEEEEEEEEEEEECC------------------------CEEEEEEEEESSCCSSEEEC---
T ss_pred eeEEEEEeccCCCCCCCCceEEEEEEEEEEeccCCCcccccCcccccccccCccCCCceEEEEEEecCCCCcccccc---
Confidence 22222221111 1223333333222211 1112345567777777765322110
Q ss_pred HHHHHHHHHhCCCCCCCCeEeecCCccEEehhHHHHHHhCCChhhhhcccccccccccccccccccCcchHHHHHHHHHH
Q 002210 737 IQGDYVGIVSSPSALIPPIFMTDEDGRCLEWNDGMEKLSGLKREEAIERMLIGEVFTVKNFGCRVKNHDTLTKLRIVMNK 816 (953)
Q Consensus 737 se~~~~~i~e~~~~li~~I~~~D~~G~i~~~N~a~~~l~G~~~eeliGk~~~~~~~~~~~~~~~l~~~~~~~~~~~~l~~ 816 (953)
.++.... ..++..|.+|+++|+|++++.++||+++|++|+++.+.++| ++...+...+..
T Consensus 245 -------~i~~~~~--~f~~~~~~dg~~~~vn~~~~~ilGY~~eEl~g~~~~~~iHp-----------dD~~~~~~~~~~ 304 (361)
T 4f3l_A 245 -------TVEEPNE--EFTSRHSLEWKFLFLDHRAPPIIGYLPFEVLGTSGYDYYHV-----------DDLENLAKCHEH 304 (361)
T ss_dssp -------SCSSSCC--EEEEEECTTSBEEEECTTSHHHHCCCHHHHTTSBGGGGBCH-----------HHHHHHHHHHHH
T ss_pred -------cccCCcc--eeEEEEcCCceEEEECChhhhhhCcCHHHHcCCCHHHeECH-----------HHHHHHHHHHHH
Confidence 0111111 25778899999999999999999999999999998754444 444445556666
Q ss_pred HhcCCCcceEEEEEEccCCCEEEEEEEEEEeecC-CCCEEEEEEEEEeccHHHHHH
Q 002210 817 VISGQDADKILFGFFDQQGKYVEALLSANKRTNA-EGKISGILCFLHVASPELQYA 871 (953)
Q Consensus 817 ~~~g~~~~~~e~~~~~kdG~~~~v~~s~~pi~d~-~G~i~g~v~v~~DITerK~~e 871 (953)
.+.++.....+|+++++||.++|+..++.+++|. +|++.+++|+.+|||+++.++
T Consensus 305 ~l~~g~~~~~eyR~~~kdG~~vWv~~~~~~v~~~~~g~~~~iv~~~~dITe~~~~~ 360 (361)
T 4f3l_A 305 LMQYGKGKSCYYRFLTKGQQWIWLQTHYYITYHQWNSRPEFIVCTHTVVSYAEVRA 360 (361)
T ss_dssp HHHHSEEECCCEEEECTTSEEEEEEEEEEEEECTTTCCEEEEEEEEEECCHHHHHH
T ss_pred HHhCCCcceEEEEEEecCCCEEEEEEEEEEEEcCCCCCeeEEEEEEEECChhHhhc
Confidence 6666666677899999999999999999999998 899999999999999988544
No 12
>4f3l_B BMAL1B; BHLH, PAS, circadian rhythm proteins, transcription-activato; 2.27A {Mus musculus}
Probab=99.77 E-value=8.4e-18 Score=190.97 Aligned_cols=233 Identities=12% Similarity=0.089 Sum_probs=160.7
Q ss_pred HHHHHhcCccEEEEcCC-CcEEecCHHHHHHhCCCcchhcCCCccccccCCcHHHHHHHHHHHh----------------
Q 002210 614 VRLIETAAVPILAVDAS-GNVNGWNSKAAELTGLTVDQAIGTALVDLVAGDSVDVVKNMLSSAF---------------- 676 (953)
Q Consensus 614 ~~lle~~~~~I~~~D~d-g~i~~~N~a~~~l~G~~~~eliG~~~~dl~~~~~~~~~~~~l~~~l---------------- 676 (953)
..++++++..+++++.+ |+|+|+|++++.++||+.++++|+++.+++||+|.+.+.+.+....
T Consensus 89 ~~ll~~~~gfi~v~~~~~G~i~yvs~~~~~~lG~~~~el~g~~~~~~ihp~D~~~~~~~L~~~~~~p~~~~~~~~tg~~~ 168 (387)
T 4f3l_B 89 HLILRAADGFLFVVGCDRGKILFVSESVFKILNYSQNDLIGQSLFDYLHPKDIAKVKEQLSSSDTAPRERLIDAKTGLPV 168 (387)
T ss_dssp HHHHHTCCSEEEEEETTTCBEEEECTTHHHHHSCCHHHHTTSBGGGGBCGGGHHHHHHHHSCC-----------------
T ss_pred HHHHhcCCCEEEEEecCCeEEEEEchhhHHHcCCCHHHHCCCcHHHhcCCCCHHHHHHHhcccccCccccccCcccCCcc
Confidence 34789999999999987 9999999999999999999999999999999999998876664321
Q ss_pred -------------cccceEEEEEEEcccC-----------------CCCCEEEEEEEEEEeec---------------CC
Q 002210 677 -------------LEERNVEIKLRAFGPR-----------------ETSGPVILVVNACCTQD---------------TK 711 (953)
Q Consensus 677 -------------~~~~~~e~~~~~~~~~-----------------~dG~~~~v~v~~~pi~d---------------~~ 711 (953)
+....+...++..... +.....++.++...... ..
T Consensus 169 ~~e~~~~~~~~~~g~~rsF~cRmr~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~~~G~l~~~~~~~~~~~~~~~~~~~~ 248 (387)
T 4f3l_B 169 KTDITPGPSRLCSGARRSFFCRMKCNRPSVKVEDKDFASTCSKKKADRKSFCTIHSTGYLKSWPPTKMGLDEDNEPDNEG 248 (387)
T ss_dssp ---------CCCGGGEEEEEEEEECSCC-------------------CCSEEEEEEEEEEEC------------------
T ss_pred CCCCCCcccccccCCceeEEEeeecccCCcccccccccccccccccCCCceEEEEEEEEEecccccccccccccccccCC
Confidence 0111223333322100 12333344433322111 01
Q ss_pred CCEEEEEEEEEecchhHHHHHHHHHHHHHHHHHHhCCCCCCCCeEeecCCccEEehhHHHHHHhCCChhhhhcccccccc
Q 002210 712 ENVIGVCFVGQDITGQKLVMDKYTRIQGDYVGIVSSPSALIPPIFMTDEDGRCLEWNDGMEKLSGLKREEAIERMLIGEV 791 (953)
Q Consensus 712 g~v~gvv~v~~DITerk~~E~~L~~se~~~~~i~e~~~~li~~I~~~D~~G~i~~~N~a~~~l~G~~~eeliGk~~~~~~ 791 (953)
+...+++++.++++........ ..+..+... .++..|.+|+++|+|+++..++||+++|++|+.+.+.+
T Consensus 249 ~~~~~lvai~r~~~~~~~~~~~--------~ei~~~~~~---fi~~~~~dg~~~~vn~~~~~ilGY~~eEl~g~~~~~~i 317 (387)
T 4f3l_B 249 CNLSCLVAIGRLHSHMVPQPAN--------GEIRVKSME---YVSRHAIDGKFVFVDQRATAILAYLPQELLGTSCYEYF 317 (387)
T ss_dssp -CCCEEEEEEEECCCSCCSCCC--------SSSCBCCCE---EEEEECTTSBEEEECTHHHHHHCCCHHHHTTSBGGGTB
T ss_pred CcceEEEEEEecccCCCCCCcc--------cccccCCce---EEEEECCCCEEEEECCCcccccCCCHHHHcCCcHHHee
Confidence 2234567777776432110000 001122222 58889999999999999999999999999999887444
Q ss_pred cccccccccccCcchHHHHHHHHHHHhcCCC-cceEEEEEEccCCCEEEEEEEEEEeecC-CCCEEEEEEEEEeccHHH
Q 002210 792 FTVKNFGCRVKNHDTLTKLRIVMNKVISGQD-ADKILFGFFDQQGKYVEALLSANKRTNA-EGKISGILCFLHVASPEL 868 (953)
Q Consensus 792 ~~~~~~~~~l~~~~~~~~~~~~l~~~~~g~~-~~~~e~~~~~kdG~~~~v~~s~~pi~d~-~G~i~g~v~v~~DITerK 868 (953)
+ +++...+...+...+.++. ....+++++++||.++|+..++.+++|. .|++.+++|+.+|||+||
T Consensus 318 H-----------pdD~~~~~~~~~~~l~~~~~~~~~eyR~~~kdG~~vWv~~~~~~~~~~~~g~~~~ivg~~~dIT~Rk 385 (387)
T 4f3l_B 318 H-----------QDDIGHLAECHRQVLQTREKITTNCYKFKIKDGSFITLRSRWFSFMNPWTKEVEYIVSTNTVVLANV 385 (387)
T ss_dssp C-----------HHHHHHHHHHHHHHTTCSSCEECCCEEEECTTSCEEEEEEEEEEEEETTTTEEEEEEEEEEECC---
T ss_pred C-----------HHHHHHHHHHHHHHHhcCCCeeeEEEEEEccCCCEEEEEEEEEEEECCCCCCEEEEEEEEEEcchhh
Confidence 3 4455556677777775543 4467999999999999999999999997 889999999999999988
No 13
>3a0r_A Sensor protein; four helix bundle, PAS fold, kinase, phosphoprotein, transfe two-component regulatory system; 3.80A {Thermotoga maritima}
Probab=99.67 E-value=2.7e-17 Score=184.12 Aligned_cols=190 Identities=18% Similarity=0.172 Sum_probs=140.6
Q ss_pred HHHHHHHHHHHHhCCCCCCCCeEeecCCccEEehhHHHHHHhCCChhhhhcccccccccccccccccccCcchHHHHHHH
Q 002210 734 YTRIQGDYVGIVSSPSALIPPIFMTDEDGRCLEWNDGMEKLSGLKREEAIERMLIGEVFTVKNFGCRVKNHDTLTKLRIV 813 (953)
Q Consensus 734 L~~se~~~~~i~e~~~~li~~I~~~D~~G~i~~~N~a~~~l~G~~~eeliGk~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 813 (953)
+++++..++.+++++++ +|+++|.+|+|++||+++++++||++++++|+++... +. .+. +...
T Consensus 3 l~~~~~~~~~i~~~~~~---~i~~~d~~g~i~~~N~a~~~l~G~~~~e~~G~~~~~~--~~---------~~~---~~~~ 65 (349)
T 3a0r_A 3 VEHLRNFSESILESLET---AIITLSKDGRITEWNKKAEQLFGLKKENVLGRRLKDL--PD---------FEE---IGSV 65 (349)
T ss_dssp ------CCCSSGGGSSS---EEEEEESSSBCSCBCHHHHHHHSCCSTTTTTCBSTTS--TT---------TTH---HHHH
T ss_pred hHHHHHHHHHHHhhhcC---eEEEECCCCCEEeeHHHHHHHhCCCHHHHcCcCHHHC--cC---------hhH---HHHH
Confidence 34566778899999988 9999999999999999999999999999999987632 11 111 1222
Q ss_pred HHHHhcCCCcceEEEEEEccCCCEEEEEEEEEEeecCCCCE-EEEEEEEEeccHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002210 814 MNKVISGQDADKILFGFFDQQGKYVEALLSANKRTNAEGKI-SGILCFLHVASPELQYALQVQRISEQAAANSLNKLEYI 892 (953)
Q Consensus 814 l~~~~~g~~~~~~e~~~~~kdG~~~~v~~s~~pi~d~~G~i-~g~v~v~~DITerK~~e~elq~~ae~~~~~k~~fla~i 892 (953)
.......+..... ....+..+|+.++..|+.+.+|.. .|++++++|||++|+.+.++++.+ ....+.++++.+
T Consensus 66 ~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~DiTe~~~~e~~~~~~~--~~~~~~~~~~~i 139 (349)
T 3a0r_A 66 AESVFENKEPVFL----NFYKFGERYFNIRFSPFRNAKTQLLEGVIITIDDVTELYKYEEERKRRE--RLSILGEMTARV 139 (349)
T ss_dssp HHHHHHHCCCCEE----ECCCBTTBCCEEEEEEECCTTTTSSCEEEEEEECCSTTTTTTTTTTHHH--HHHHHHHHHHHH
T ss_pred HHHHHhcCCceee----cccccCceEEEEEEEEEEcCCCceeeEEEEEEEechHHHHHHHHHHHHH--HHHHHHHHHHHH
Confidence 3333333332222 122223457788899999888775 589999999999998776654432 234567899999
Q ss_pred HHHhhhHHHHHHHHHHhhcCCC-CCHHHHHHHHHHHHHHHHHHhHhhh-hcccchh
Q 002210 893 RREIRKPLNGIAFMQNLMGTSD-LSEEQKQLLKTSVLCQEQLTNIVDD-TDIESIE 946 (953)
Q Consensus 893 sHELrnPL~~I~g~~~LL~~~~-l~e~~~~~l~~i~~~~~~L~~lI~D-LdlsrIe 946 (953)
+||+||||++|.+++++|.... .+++.+++++.+..+.++|.+++++ ++++|..
T Consensus 140 ~Helr~pL~~i~~~~~~l~~~~~~~~~~~~~l~~i~~~~~~l~~li~~ll~~~~~~ 195 (349)
T 3a0r_A 140 AHEIRNPITIIGGFIMRMKKHLDDPETLKKYINIITNELSRLETIVKEILEYSKER 195 (349)
T ss_dssp HHHHHHHHHHHHHHHHHHTTSCSCSSCTTHHHHHHHHHHHHHHHHHHHHHHHHHCC
T ss_pred HHHhcchHHHHHHHHHHHHhhccCcHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCc
Confidence 9999999999999999998743 3445688999999999999999999 7998853
No 14
>3mr0_A Sensory box histidine kinase/response regulator; PAS fold, structural genomics, PSI-2; HET: PG5; 1.49A {Burkholderia thailandensis}
Probab=99.67 E-value=9.3e-16 Score=148.07 Aligned_cols=138 Identities=9% Similarity=0.020 Sum_probs=116.6
Q ss_pred HHHHHHHHHHHHHHHhcCccEEEEcCCCcEEecCHHHHHHhCCCcchhcC--CCccccccCCcHHHHHHHHHHHhcccce
Q 002210 604 DELRIITNEMVRLIETAAVPILAVDASGNVNGWNSKAAELTGLTVDQAIG--TALVDLVAGDSVDVVKNMLSSAFLEERN 681 (953)
Q Consensus 604 ~eL~~~~~~l~~lle~~~~~I~~~D~dg~i~~~N~a~~~l~G~~~~eliG--~~~~dl~~~~~~~~~~~~l~~~l~~~~~ 681 (953)
++|++++++|+.+++++++++|.+|.++.++++|+++.+++||+.+++.+ ..+.+++||++.+.+...+..++..+..
T Consensus 2 ~aL~~se~rl~~~~~~~~~g~w~~d~~~~~~~~s~~~~~~~G~~~~~~~~~~~~~~~~ihpdD~~~~~~~~~~~~~~~~~ 81 (142)
T 3mr0_A 2 NALSASEERFQLAVSGASAGLWDWNPKTGAMYLSPHFKKIMGYEDHELPDEITGHRESIHPDDRARVLAALKAHLEHRDT 81 (142)
T ss_dssp -------CCHHHHHHHTTCEEEEECTTTCCEEECHHHHHHTTCCGGGSCSEEC---CCBCTTTHHHHHHHHHHHHHHCCC
T ss_pred hHHHHHHHHHHHHHHhCCcEEEEEEcCCCeEEECHHHHHHhCCCccccCCCHHHHHhhcCHHHHHHHHHHHHHHHhCCCc
Confidence 35778888999999999999999999999999999999999999998776 3466899999999988888888866666
Q ss_pred EEEEEEEcccCCCCCEEEEEEEEEEeecCCCCEEEEEEEEEecchhHHHHHHHHHHHHHHHH
Q 002210 682 VEIKLRAFGPRETSGPVILVVNACCTQDTKENVIGVCFVGQDITGQKLVMDKYTRIQGDYVG 743 (953)
Q Consensus 682 ~e~~~~~~~~~~dG~~~~v~v~~~pi~d~~g~v~gvv~v~~DITerk~~E~~L~~se~~~~~ 743 (953)
+..+++. .+++|..+|+...+.|++|.+|.+.+++|+++|||++|++|++|++++++|+.
T Consensus 82 ~~~e~r~--~~~~G~~~w~~~~~~~~~d~~g~~~~~~G~~~DITerk~~E~~L~~~~~~l~~ 141 (142)
T 3mr0_A 82 YDVEYRV--RTRSGDFRWIQSRGQALWNSAGEPYRMVGWIMDVTDRKRDEDALRVSREELRR 141 (142)
T ss_dssp EEEEEEE--ECTTSCEEEEEEEEEEEECTTSCEEEEEEEEEECHHHHHHHHHHHHHHHHHHT
T ss_pred eEEEEEE--ECCCCCEEEEEEEEEEEECCCCCEEEEEEEEEcCchHHHHHHHHHHHHHHHhc
Confidence 7777665 56789999999999999999999999999999999999999999999999875
No 15
>3p7n_A Sensor histidine kinase; LOV domain, light-activated transcription factor, DNA bindin; HET: FMN; 2.10A {Erythrobacter litoralis}
Probab=99.64 E-value=1.3e-15 Score=162.92 Aligned_cols=175 Identities=10% Similarity=0.050 Sum_probs=117.0
Q ss_pred cchhHHHHHHHHHHHHHHHHHHhCCCCCCCCeEeecC---CccEEehhHHHHHHhCCChhhhhccccccccccccccccc
Q 002210 724 ITGQKLVMDKYTRIQGDYVGIVSSPSALIPPIFMTDE---DGRCLEWNDGMEKLSGLKREEAIERMLIGEVFTVKNFGCR 800 (953)
Q Consensus 724 ITerk~~E~~L~~se~~~~~i~e~~~~li~~I~~~D~---~G~i~~~N~a~~~l~G~~~eeliGk~~~~~~~~~~~~~~~ 800 (953)
+......++++++++.+|+.+++++++ +|+++|. +|+|++||+++++++||++++++|+.+. .++++.
T Consensus 48 ~~~~~~~~~~l~~~~~~~~~i~~~~~~---~i~~~d~~~~~g~i~~~N~a~~~l~G~~~~el~g~~~~-~l~~~~----- 118 (258)
T 3p7n_A 48 APGADDTRVEVQPPAQWVLDLIEASPI---ASVVSDPRLADNPLIAINQAFTDLTGYSEEECVGRNCR-FLAGSG----- 118 (258)
T ss_dssp -------------CCHHHHHHHHTCSS---EEEEECTTSTTCCEEEECHHHHHHHCCCGGGTTTSCGG-GGCCTT-----
T ss_pred CCcchhhHHHHHhHHHHHHHHHhcCCc---cEEEEcCCCCCCcEEEEhHHHHHHcCCCHHHHCCCChh-hccCCC-----
Confidence 334445566688888999999999988 9999999 8999999999999999999999999864 333321
Q ss_pred ccCcchHHHHHHHHHHHhcCCCcceEEEEEEccCCCEEEEEEEEEEeecCCCCEEEEEEEEEeccHHHH--HHHHHHHHH
Q 002210 801 VKNHDTLTKLRIVMNKVISGQDADKILFGFFDQQGKYVEALLSANKRTNAEGKISGILCFLHVASPELQ--YALQVQRIS 878 (953)
Q Consensus 801 l~~~~~~~~~~~~l~~~~~g~~~~~~e~~~~~kdG~~~~v~~s~~pi~d~~G~i~g~v~v~~DITerK~--~e~elq~~a 878 (953)
....+...+...+..+..+..++.++++||+.+|+.++..|++|.+|.+.+++++++|||++|+ .+.++++..
T Consensus 119 -----~~~~~~~~~~~~l~~~~~~~~e~~~~~~dG~~~~~~~~~~pi~d~~g~~~~~v~~~~DITerk~~~~e~~~~~~~ 193 (258)
T 3p7n_A 119 -----TEPWLTDKIRQGVREHKPVLVEILNYKKDGTPFRNAVLVAPIYDDDDELLYFLGSQVEVDDDQPNMGMARRERAA 193 (258)
T ss_dssp -----CCHHHHHHHHHHHHHTCCEEEEEEEECTTSCEEEEEEEEEEEECTTSCSEEEEEEEEEC-------CHHHHHHHH
T ss_pred -----CchhHHHHHHHHHHcCCCeEEEEEEEcCCCCEEEEeeEEEEEEcCCCCEEEEEEEeeecchhhhhhhHHHHHHHH
Confidence 1122334455555566677888999999999999999999999999999999999999999953 333332222
Q ss_pred HHHH---HHHHHH---------HHHHHHHhhhHHHHHHHHHHhhcC
Q 002210 879 EQAA---ANSLNK---------LEYIRREIRKPLNGIAFMQNLMGT 912 (953)
Q Consensus 879 e~~~---~~k~~f---------la~isHELrnPL~~I~g~~~LL~~ 912 (953)
+... ....+. ...++|++..+++.|......+..
T Consensus 194 ~~l~~L~~r~~~i~~~~~~g~~~~eia~~l~~s~~tv~~~l~~i~~ 239 (258)
T 3p7n_A 194 EMLKTLSPRQLEVTTLVASGLRNKEVAARLGLSEKTVKMHRGLVME 239 (258)
T ss_dssp HHHTTSCHHHHHHHHHHHTTCCHHHHHHHHTCCHHHHHHHHHHHHH
T ss_pred HHHhhcCHHHHHHHHHHHcCCCHHHHHHHHCcCHHHHHHHHHHHHH
Confidence 1111 011111 355678888888877777765543
No 16
>3mr0_A Sensory box histidine kinase/response regulator; PAS fold, structural genomics, PSI-2; HET: PG5; 1.49A {Burkholderia thailandensis}
Probab=99.62 E-value=3.4e-15 Score=144.11 Aligned_cols=135 Identities=10% Similarity=0.108 Sum_probs=109.6
Q ss_pred HHHHHHHHHHHHHHhCCCCCCCCeEeecCCccEEehhHHHHHHhCCChhhhhccc--ccccccccccccccccCcchHHH
Q 002210 732 DKYTRIQGDYVGIVSSPSALIPPIFMTDEDGRCLEWNDGMEKLSGLKREEAIERM--LIGEVFTVKNFGCRVKNHDTLTK 809 (953)
Q Consensus 732 ~~L~~se~~~~~i~e~~~~li~~I~~~D~~G~i~~~N~a~~~l~G~~~eeliGk~--~~~~~~~~~~~~~~l~~~~~~~~ 809 (953)
++|++++++|+.++++++. ++|.+|.++.+++||+++.+++||+++++.+.. +. ...++++...
T Consensus 2 ~aL~~se~rl~~~~~~~~~---g~w~~d~~~~~~~~s~~~~~~~G~~~~~~~~~~~~~~-----------~~ihpdD~~~ 67 (142)
T 3mr0_A 2 NALSASEERFQLAVSGASA---GLWDWNPKTGAMYLSPHFKKIMGYEDHELPDEITGHR-----------ESIHPDDRAR 67 (142)
T ss_dssp -------CCHHHHHHHTTC---EEEEECTTTCCEEECHHHHHHTTCCGGGSCSEEC--------------CCBCTTTHHH
T ss_pred hHHHHHHHHHHHHHHhCCc---EEEEEEcCCCeEEECHHHHHHhCCCccccCCCHHHHH-----------hhcCHHHHHH
Confidence 4678889999999999987 899999999999999999999999999887642 22 2233455556
Q ss_pred HHHHHHHHhcCCCcceEEEEEEccCCCEEEEEEEEEEeecCCCCEEEEEEEEEeccHHHHHHHHHHHHHHH
Q 002210 810 LRIVMNKVISGQDADKILFGFFDQQGKYVEALLSANKRTNAEGKISGILCFLHVASPELQYALQVQRISEQ 880 (953)
Q Consensus 810 ~~~~l~~~~~g~~~~~~e~~~~~kdG~~~~v~~s~~pi~d~~G~i~g~v~v~~DITerK~~e~elq~~ae~ 880 (953)
+...+...+.++.....++++.++||+++|+...+.|++|.+|++.+++|+++|||++|++|.+|++..++
T Consensus 68 ~~~~~~~~~~~~~~~~~e~r~~~~~G~~~w~~~~~~~~~d~~g~~~~~~G~~~DITerk~~E~~L~~~~~~ 138 (142)
T 3mr0_A 68 VLAALKAHLEHRDTYDVEYRVRTRSGDFRWIQSRGQALWNSAGEPYRMVGWIMDVTDRKRDEDALRVSREE 138 (142)
T ss_dssp HHHHHHHHHHHCCCEEEEEEEECTTSCEEEEEEEEEEEECTTSCEEEEEEEEEECHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhCCCceEEEEEEECCCCCEEEEEEEEEEEECCCCCEEEEEEEEEcCchHHHHHHHHHHHHHH
Confidence 77777777777777889999999999999999999999999999999999999999999999888766553
No 17
>3rty_A Period circadian protein; PAS domain, signalling, timeless, circadian clock protein; 2.85A {Drosophila melanogaster} PDB: 1wa9_A 3gec_A
Probab=99.59 E-value=1.5e-14 Score=160.04 Aligned_cols=220 Identities=12% Similarity=0.073 Sum_probs=153.2
Q ss_pred cEEEEc-CCCcEEecCHHHHHHhCCCcchhcCCCccccccCCcHHHHHHHHHHHhccc----------ceEEEEEEEccc
Q 002210 623 PILAVD-ASGNVNGWNSKAAELTGLTVDQAIGTALVDLVAGDSVDVVKNMLSSAFLEE----------RNVEIKLRAFGP 691 (953)
Q Consensus 623 ~I~~~D-~dg~i~~~N~a~~~l~G~~~~eliG~~~~dl~~~~~~~~~~~~l~~~l~~~----------~~~e~~~~~~~~ 691 (953)
-+++++ .+|+|+|+|+.+..++||+.++++|+++.+++||++.+.+...+...+... ..+-..+.....
T Consensus 5 F~~vv~~~~G~i~yvS~~~~~~LGy~~~el~G~s~~d~ihp~D~~~f~~~L~~gl~~~~~~~~~~~~~rsffcR~~rr~~ 84 (339)
T 3rty_A 5 FCCVISMHDGIVLYTTPSITDVLGYPRDMWLGRSFIDFVHLKDRATFASQITTGIPIAESRGSVPKDAKSTFCVMLRRYR 84 (339)
T ss_dssp EEEEEETTTCBEEEECTTHHHHHCCCTTSSTTSBGGGGBCHHHHHHHHHHHHTTSCCC----------CCEEEEEEECCC
T ss_pred EEEEEECCCcEEEEEChHHHHHcCCCHHHHCCCcHHHhcCHHHHHHHHHHHhcCCCCCccccCCCCCCceEEEEEEeccC
Confidence 356778 699999999999999999999999999999999999998777776543110 122222211100
Q ss_pred ------------CCCCCEEEEEEEEEEeecC---------CCCEEEEEEEEEecchhHHHHHHHHHHHHHHHHHH-hCCC
Q 002210 692 ------------RETSGPVILVVNACCTQDT---------KENVIGVCFVGQDITGQKLVMDKYTRIQGDYVGIV-SSPS 749 (953)
Q Consensus 692 ------------~~dG~~~~v~v~~~pi~d~---------~g~v~gvv~v~~DITerk~~E~~L~~se~~~~~i~-e~~~ 749 (953)
.....++|+..+..++.+. .|...+++.++.+++.......+ ++ ....
T Consensus 85 ~l~s~gy~v~~~~~~~~p~~l~~~~~~~~~e~~~~~~~~~~g~~~~lv~~a~~i~s~~~~p~e----------~~~~~~~ 154 (339)
T 3rty_A 85 GLKSGGFGVIGRPVSYEPFRLGLTFREAPEEARPDNYMVSNGTNMLLVICATPIKSSYKVPDE----------ILSQKSP 154 (339)
T ss_dssp -------------CCEEEEEEEEEEEECCCC----------CCCEEEEEEEEECCCSCSSTTB----------BCCSSCC
T ss_pred CCCcCCcceecccccceeEEEEEEEeccccccccccccccCCceEEEEEEcccCCccccccch----------hhccCCc
Confidence 0112233444444454443 46677888889999864321100 11 1122
Q ss_pred CCCCCeEeecCCccEEehhHHHHHHhCCChhhhhcccccccccccccccccccCcchHHHHHHHHHHHhcCCCc-----c
Q 002210 750 ALIPPIFMTDEDGRCLEWNDGMEKLSGLKREEAIERMLIGEVFTVKNFGCRVKNHDTLTKLRIVMNKVISGQDA-----D 824 (953)
Q Consensus 750 ~li~~I~~~D~~G~i~~~N~a~~~l~G~~~eeliGk~~~~~~~~~~~~~~~l~~~~~~~~~~~~l~~~~~g~~~-----~ 824 (953)
+ .++..|.+|+++|+|+++..++||.++|++|+.+.+.++|+ +...+...+...+..+.. .
T Consensus 155 ~---fi~r~~~dG~~~yvn~~~~~lLGY~peELiG~s~~~~vHPd-----------D~~~~~~~~~~~l~~G~~~~~~~~ 220 (339)
T 3rty_A 155 K---FAIRHTATGIISHVDSAAVSALGYLPQDLIGRSIMDFYHHE-----------DLSVMKETYETVMKKGQTAGASFC 220 (339)
T ss_dssp E---EEEEEETTCBEEEECTTHHHHHCCCHHHHTTSBGGGGBCGG-----------GHHHHHHHHHHHHHHTTSTTCCCB
T ss_pred e---EEEEECCCCeEEEcChhhhcccCCCHHHHcCCcHHHEECHH-----------HHHHHHHHHHHHHHcCCccccccc
Confidence 2 68889999999999999999999999999999987555544 334455555555543332 3
Q ss_pred eEEEEEEccCCCEEEEEEEEEEeecCC-CCEEEEEEEEEeccH
Q 002210 825 KILFGFFDQQGKYVEALLSANKRTNAE-GKISGILCFLHVASP 866 (953)
Q Consensus 825 ~~e~~~~~kdG~~~~v~~s~~pi~d~~-G~i~g~v~v~~DITe 866 (953)
..+||++++||.++|+..+.++++|.. +++..++|+.+.|+.
T Consensus 221 s~~yR~~~kdG~~vWlet~~~~~~np~s~~~~~II~~h~vi~~ 263 (339)
T 3rty_A 221 SKPYRFLIQNGCYVLLETEWTSFVNPWSRKLEFVVGHHRVFQG 263 (339)
T ss_dssp CCCEEEECTTSCEEEEEEEEEEEECTTTCSEEEEEEEEEEEEC
T ss_pred ceEEEEEccCCCEEEEEEEEEEEECCCCCCeeEEEEEEEECCC
Confidence 578999999999999999999999875 567778888877763
No 18
>2gj3_A Nitrogen fixation regulatory protein; PAS domain, FAD, redox sensor, atomic resolution, transferase; HET: FAD; 1.04A {Azotobacter vinelandii}
Probab=99.57 E-value=9.7e-15 Score=136.15 Aligned_cols=117 Identities=13% Similarity=-0.001 Sum_probs=95.2
Q ss_pred HHHHHHHHhCCCCCCCCeEeecCCccEEehhHHHHHHhCCChhhhhcccccccccccccccccccCcchHHHHHHHHHHH
Q 002210 738 QGDYVGIVSSPSALIPPIFMTDEDGRCLEWNDGMEKLSGLKREEAIERMLIGEVFTVKNFGCRVKNHDTLTKLRIVMNKV 817 (953)
Q Consensus 738 e~~~~~i~e~~~~li~~I~~~D~~G~i~~~N~a~~~l~G~~~eeliGk~~~~~~~~~~~~~~~l~~~~~~~~~~~~l~~~ 817 (953)
+.+|+.+++++++ +|+++|.+|+|+++|+++++++||+.++++|+++.. +.+... .......+...
T Consensus 4 ~~~~~~~~~~~~~---~i~~~d~~g~i~~~N~a~~~~~G~~~~elig~~~~~-l~~~~~----------~~~~~~~~~~~ 69 (120)
T 2gj3_A 4 PEIFRQTVEHAPI---AISITDLKANILYANRAFRTITGYGSEEVLGKNESI-LSNGTT----------PRLVYQALWGR 69 (120)
T ss_dssp HHHHHHHHHHCSS---EEEEECTTCBEEEECHHHHHHHCCCTTGGGGCBGGG-GCCTTS----------CHHHHHHHHHH
T ss_pred HHHHHHHHHhCCC---eEEEECCCCCEEeehHHHHHHHCcCHHHHcCCCHHH-cCCCCC----------CHHHHHHHHHH
Confidence 4578899999987 899999999999999999999999999999998753 332211 11122334444
Q ss_pred hcCCCcceEEEEEEccCCCEEEEEEEEEEeecCCCCEEEEEEEEEeccHHH
Q 002210 818 ISGQDADKILFGFFDQQGKYVEALLSANKRTNAEGKISGILCFLHVASPEL 868 (953)
Q Consensus 818 ~~g~~~~~~e~~~~~kdG~~~~v~~s~~pi~d~~G~i~g~v~v~~DITerK 868 (953)
+..+..+..++.++++||+.+|+.++..|++|.+|++.+++++++|||++|
T Consensus 70 ~~~~~~~~~e~~~~~~dG~~~~~~~~~~pi~~~~g~~~~~v~~~~DITe~k 120 (120)
T 2gj3_A 70 LAQKKPWSGVLVNRRKDKTLYLAELTVAPVLNEAGETIYYLGMHRDTSELH 120 (120)
T ss_dssp HHTTCCEEEEEEEECTTSCEEEEEEEEEEEECTTSCEEEEEEEEEECCSCC
T ss_pred HHcCCCEEEEEEEEcCCCCEEEEEEEEEEEECCCCCEEEEEEEeccCcccC
Confidence 555556778888999999999999999999999999999999999999864
No 19
>2pr5_A Blue-light photoreceptor; light-oxygen-voltage, LOV, PER-ARNT-SIM, PAS, flavoprotein, protein; HET: FMN; 1.45A {Bacillus subtilis} PDB: 2pr6_A*
Probab=99.57 E-value=3.3e-14 Score=134.97 Aligned_cols=126 Identities=12% Similarity=0.089 Sum_probs=100.8
Q ss_pred HHHHhcCccEEEEcCCC---cEEecCHHHHHHhCCCcchhcCCCccccccCCcHHHHHHHHHHHhcccceEEEEEEEccc
Q 002210 615 RLIETAAVPILAVDASG---NVNGWNSKAAELTGLTVDQAIGTALVDLVAGDSVDVVKNMLSSAFLEERNVEIKLRAFGP 691 (953)
Q Consensus 615 ~lle~~~~~I~~~D~dg---~i~~~N~a~~~l~G~~~~eliG~~~~dl~~~~~~~~~~~~l~~~l~~~~~~e~~~~~~~~ 691 (953)
.++++++++|+++|.+| +|+++|+++++++||+.++++|+++..+.++.........+...+..+.....++.. .
T Consensus 3 ~~~~~~~~~i~~~d~~g~~~~i~~~N~a~~~~~G~~~~el~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~e~~~--~ 80 (132)
T 2pr5_A 3 HMLDHVRVGVVITDPALEDNPIVYVNQGFVQMTGYETEEILGKNCRFLQGKHTDPAEVDNIRTALQNKEPVTVQIQN--Y 80 (132)
T ss_dssp ---CCCCCEEEEECTTSTTCCEEEECHHHHHHHSCCHHHHTTSCGGGGCCTTCCHHHHHHHHHHHHHTCCEEEEEEE--E
T ss_pred hHHhcCCCcEEEEeCCCCCCcEEEECHHHHHHhCcCHHHHcCCChhhhCCCCCCHHHHHHHHHHHHcCCCeEEEEEE--E
Confidence 47899999999999977 999999999999999999999999887766655444444555555444444444443 5
Q ss_pred CCCCCEEEEEEEEEEeecCCCCEEEEEEEEEecchhHHHHHHHHHHHHHHHHH
Q 002210 692 RETSGPVILVVNACCTQDTKENVIGVCFVGQDITGQKLVMDKYTRIQGDYVGI 744 (953)
Q Consensus 692 ~~dG~~~~v~v~~~pi~d~~g~v~gvv~v~~DITerk~~E~~L~~se~~~~~i 744 (953)
++||..+|+.++..|+.+.+ +.+++++++|||++|++|++|++++++++.+
T Consensus 81 ~kdG~~~~~~~~~~~~~~~~--~~~~~~~~~DITe~k~~e~~l~~~~~~l~~l 131 (132)
T 2pr5_A 81 KKDGTMFWNELNIDPMEIED--KTYFVGIQNDITKQKEYEKLLEDSLTEITAL 131 (132)
T ss_dssp CTTSCEEEEEEEEEEEEETT--EEEEEEEEEECHHHHHHHHHHHHHHHHHHHT
T ss_pred ecCCCeeeeEEEEEeccCCC--eeEEEEEEEeCcHHHHHHHHHHHHHHHHHhc
Confidence 67999999999999999854 8889999999999999999999999888764
No 20
>2pr5_A Blue-light photoreceptor; light-oxygen-voltage, LOV, PER-ARNT-SIM, PAS, flavoprotein, protein; HET: FMN; 1.45A {Bacillus subtilis} PDB: 2pr6_A*
Probab=99.56 E-value=5.2e-14 Score=133.58 Aligned_cols=122 Identities=8% Similarity=0.092 Sum_probs=93.1
Q ss_pred HHHhCCCCCCCCeEeecCCc---cEEehhHHHHHHhCCChhhhhcccccccccccccccccccCcchHHHHHHHHHHHhc
Q 002210 743 GIVSSPSALIPPIFMTDEDG---RCLEWNDGMEKLSGLKREEAIERMLIGEVFTVKNFGCRVKNHDTLTKLRIVMNKVIS 819 (953)
Q Consensus 743 ~i~e~~~~li~~I~~~D~~G---~i~~~N~a~~~l~G~~~eeliGk~~~~~~~~~~~~~~~l~~~~~~~~~~~~l~~~~~ 819 (953)
.+++++++ +|+++|.+| +|+++|+++++++||+.++++|+++. .+.++.. ... ....+...+.
T Consensus 3 ~~~~~~~~---~i~~~d~~g~~~~i~~~N~a~~~~~G~~~~el~g~~~~-~l~~~~~------~~~----~~~~~~~~~~ 68 (132)
T 2pr5_A 3 HMLDHVRV---GVVITDPALEDNPIVYVNQGFVQMTGYETEEILGKNCR-FLQGKHT------DPA----EVDNIRTALQ 68 (132)
T ss_dssp ---CCCCC---EEEEECTTSTTCCEEEECHHHHHHHSCCHHHHTTSCGG-GGCCTTC------CHH----HHHHHHHHHH
T ss_pred hHHhcCCC---cEEEEeCCCCCCcEEEECHHHHHHhCcCHHHHcCCChh-hhCCCCC------CHH----HHHHHHHHHH
Confidence 46778877 899999977 99999999999999999999999864 2322211 011 2223344444
Q ss_pred CCCcceEEEEEEccCCCEEEEEEEEEEeecCCCCEEEEEEEEEeccHHHHHHHHHHHHHHH
Q 002210 820 GQDADKILFGFFDQQGKYVEALLSANKRTNAEGKISGILCFLHVASPELQYALQVQRISEQ 880 (953)
Q Consensus 820 g~~~~~~e~~~~~kdG~~~~v~~s~~pi~d~~G~i~g~v~v~~DITerK~~e~elq~~ae~ 880 (953)
.+..+..++.++++||+.+|+.++..|+.|.+ +.+++++++|||++|+.|.++++..++
T Consensus 69 ~~~~~~~e~~~~~kdG~~~~~~~~~~~~~~~~--~~~~~~~~~DITe~k~~e~~l~~~~~~ 127 (132)
T 2pr5_A 69 NKEPVTVQIQNYKKDGTMFWNELNIDPMEIED--KTYFVGIQNDITKQKEYEKLLEDSLTE 127 (132)
T ss_dssp HTCCEEEEEEEECTTSCEEEEEEEEEEEEETT--EEEEEEEEEECHHHHHHHHHHHHHHHH
T ss_pred cCCCeEEEEEEEecCCCeeeeEEEEEeccCCC--eeEEEEEEEeCcHHHHHHHHHHHHHHH
Confidence 55567788889999999999999999998765 888999999999999999887765553
No 21
>4hia_A LOV protein; PAS, HTH, signaling protein; HET: FMN; 1.95A {Rhodobacter sphaeroides} PDB: 4hnb_A* 4hj4_A* 4hj6_A* 4hj3_A*
Probab=99.55 E-value=1.1e-14 Score=145.30 Aligned_cols=163 Identities=14% Similarity=0.047 Sum_probs=123.7
Q ss_pred HHHHHHHHHHhcCccEEEEcCC---CcEEecCHHHHHHhCCCcchhcCCCccccccCCcHHHHHHHHHHHhcccceEEEE
Q 002210 609 ITNEMVRLIETAAVPILAVDAS---GNVNGWNSKAAELTGLTVDQAIGTALVDLVAGDSVDVVKNMLSSAFLEERNVEIK 685 (953)
Q Consensus 609 ~~~~l~~lle~~~~~I~~~D~d---g~i~~~N~a~~~l~G~~~~eliG~~~~dl~~~~~~~~~~~~l~~~l~~~~~~e~~ 685 (953)
...+++.++++++++|+++|.+ |+|+++|+++++++||+.++++|+++..++++.+.......+...+..+.....+
T Consensus 5 ~~~~~~~~~~~~~~~i~~~d~~~~~g~i~~~N~a~~~~~G~~~~e~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e 84 (176)
T 4hia_A 5 QFEKIRAVFDRSGVALTLVDMSLPEQPVVLANPPFLRMTGYTEGQILGFNCRFLQRGDENAQARADIRDALKLGRELQVV 84 (176)
T ss_dssp HHHHHHHHHHHCSSCCEEEETTSTTCCEEEECHHHHHHHTCCHHHHTTSCGGGGCCTTCCHHHHHHHHHHHHHTCCEEEE
T ss_pred HHHHHHHHHhcCCCcEEEEecCCCCCcEEEECHHHHHHHCcCHHHHcCCCcceeeCCCCCHHHHHHHHHHHHcCCceEEE
Confidence 3456788999999999999999 9999999999999999999999999998888887777777777777555555555
Q ss_pred EEEcccCCCCCEEEEEEEEEEeecCCCCEEEEEEEEEecchhHHHHHHHHHHHHH-HHHHHhCCCCCCCCeEeecCCccE
Q 002210 686 LRAFGPRETSGPVILVVNACCTQDTKENVIGVCFVGQDITGQKLVMDKYTRIQGD-YVGIVSSPSALIPPIFMTDEDGRC 764 (953)
Q Consensus 686 ~~~~~~~~dG~~~~v~v~~~pi~d~~g~v~gvv~v~~DITerk~~E~~L~~se~~-~~~i~e~~~~li~~I~~~D~~G~i 764 (953)
+.. .+++|..+|+.++..|+++.+|.+.+++++++|||++|++|+++...... +..+.+.... .....+.+.+.
T Consensus 85 ~~~--~~~dG~~~~~~~~~~pi~~~~g~~~~~~~~~~DITe~k~~e~~~~~a~~d~LtgL~NR~~~---~~~~~~~~~~~ 159 (176)
T 4hia_A 85 LRN--YRANDEPFDNLLFLHPVGGRPDAPDYFLGSQFELGRSGNSEEAAAAGHAGALTGELARIGT---VAARLEMDSRR 159 (176)
T ss_dssp EEE--ECTTCCEEEEEEEEEEESSBTTBCSEEEEEEEEESSSGGGHHHHHHHHHHHHHHHHHHTTS---SCGGGHHHHHH
T ss_pred EEE--EcCCCCEEEEEEEEEEeeCCCCCeEEEEEEEEECcHhhHHHHHHHHhhhhHHhhhhhhhhh---HHHHHHHHHHH
Confidence 444 46789999999999999999999999999999999999999884333222 3334433322 23333444444
Q ss_pred EehhHHHHHHhC
Q 002210 765 LEWNDGMEKLSG 776 (953)
Q Consensus 765 ~~~N~a~~~l~G 776 (953)
..+|.+++-+.+
T Consensus 160 ~~~~~~~~~~~~ 171 (176)
T 4hia_A 160 HLAQAAAALVRA 171 (176)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 455555554443
No 22
>2gj3_A Nitrogen fixation regulatory protein; PAS domain, FAD, redox sensor, atomic resolution, transferase; HET: FAD; 1.04A {Azotobacter vinelandii}
Probab=99.55 E-value=4.2e-14 Score=131.76 Aligned_cols=117 Identities=15% Similarity=0.108 Sum_probs=96.7
Q ss_pred HHHHHHHHHhcCccEEEEcCCCcEEecCHHHHHHhCCCcchhcCCCccccccCCcHHHHHHHHHHHhcccceEEEEEEEc
Q 002210 610 TNEMVRLIETAAVPILAVDASGNVNGWNSKAAELTGLTVDQAIGTALVDLVAGDSVDVVKNMLSSAFLEERNVEIKLRAF 689 (953)
Q Consensus 610 ~~~l~~lle~~~~~I~~~D~dg~i~~~N~a~~~l~G~~~~eliG~~~~dl~~~~~~~~~~~~l~~~l~~~~~~e~~~~~~ 689 (953)
++.++.++++++++|+++|.+|+|+++|+++++++||+.++++|+++..+.++.........+...+..+.....++..
T Consensus 4 ~~~~~~~~~~~~~~i~~~d~~g~i~~~N~a~~~~~G~~~~elig~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~e~~~- 82 (120)
T 2gj3_A 4 PEIFRQTVEHAPIAISITDLKANILYANRAFRTITGYGSEEVLGKNESILSNGTTPRLVYQALWGRLAQKKPWSGVLVN- 82 (120)
T ss_dssp HHHHHHHHHHCSSEEEEECTTCBEEEECHHHHHHHCCCTTGGGGCBGGGGCCTTSCHHHHHHHHHHHHTTCCEEEEEEE-
T ss_pred HHHHHHHHHhCCCeEEEECCCCCEEeehHHHHHHHCcCHHHHcCCCHHHcCCCCCCHHHHHHHHHHHHcCCCEEEEEEE-
Confidence 3567889999999999999999999999999999999999999999988877665544444444555444444444433
Q ss_pred ccCCCCCEEEEEEEEEEeecCCCCEEEEEEEEEecchhH
Q 002210 690 GPRETSGPVILVVNACCTQDTKENVIGVCFVGQDITGQK 728 (953)
Q Consensus 690 ~~~~dG~~~~v~v~~~pi~d~~g~v~gvv~v~~DITerk 728 (953)
.++||..+|+.++..|+++.+|.+.+++++++|||++|
T Consensus 83 -~~~dG~~~~~~~~~~pi~~~~g~~~~~v~~~~DITe~k 120 (120)
T 2gj3_A 83 -RRKDKTLYLAELTVAPVLNEAGETIYYLGMHRDTSELH 120 (120)
T ss_dssp -ECTTSCEEEEEEEEEEEECTTSCEEEEEEEEEECCSCC
T ss_pred -EcCCCCEEEEEEEEEEEECCCCCEEEEEEEeccCcccC
Confidence 56799999999999999999999999999999999985
No 23
>3p7n_A Sensor histidine kinase; LOV domain, light-activated transcription factor, DNA bindin; HET: FMN; 2.10A {Erythrobacter litoralis}
Probab=99.54 E-value=1.4e-14 Score=154.97 Aligned_cols=174 Identities=13% Similarity=0.134 Sum_probs=125.8
Q ss_pred HHHHHHHHHHHHHHHHhcCccEEEEcC---CCcEEecCHHHHHHhCCCcchhcCCCccccccCCcHHHHHHHHHHHhccc
Q 002210 603 IDELRIITNEMVRLIETAAVPILAVDA---SGNVNGWNSKAAELTGLTVDQAIGTALVDLVAGDSVDVVKNMLSSAFLEE 679 (953)
Q Consensus 603 ~~eL~~~~~~l~~lle~~~~~I~~~D~---dg~i~~~N~a~~~l~G~~~~eliG~~~~dl~~~~~~~~~~~~l~~~l~~~ 679 (953)
..++++.++.++.++++++++|+++|. +|+|+++|+++++++||+.++++|+++.++.++.+.......+...+..+
T Consensus 55 ~~~l~~~~~~~~~i~~~~~~~i~~~d~~~~~g~i~~~N~a~~~l~G~~~~el~g~~~~~l~~~~~~~~~~~~~~~~l~~~ 134 (258)
T 3p7n_A 55 RVEVQPPAQWVLDLIEASPIASVVSDPRLADNPLIAINQAFTDLTGYSEEECVGRNCRFLAGSGTEPWLTDKIRQGVREH 134 (258)
T ss_dssp ------CCHHHHHHHHTCSSEEEEECTTSTTCCEEEECHHHHHHHCCCGGGTTTSCGGGGCCTTCCHHHHHHHHHHHHHT
T ss_pred HHHHHhHHHHHHHHHhcCCccEEEEcCCCCCCcEEEEhHHHHHHcCCCHHHHCCCChhhccCCCCchhHHHHHHHHHHcC
Confidence 345677778899999999999999999 99999999999999999999999999998888887777777777777555
Q ss_pred ceEEEEEEEcccCCCCCEEEEEEEEEEeecCCCCEEEEEEEEEecchh--HHHHHHHHHHHHHHHHHHhCCCCCCCCeEe
Q 002210 680 RNVEIKLRAFGPRETSGPVILVVNACCTQDTKENVIGVCFVGQDITGQ--KLVMDKYTRIQGDYVGIVSSPSALIPPIFM 757 (953)
Q Consensus 680 ~~~e~~~~~~~~~~dG~~~~v~v~~~pi~d~~g~v~gvv~v~~DITer--k~~E~~L~~se~~~~~i~e~~~~li~~I~~ 757 (953)
..+..++.. .++||..+|+.++..|+++.+|.+.+++++++|||++ ++.+.++.+.+..+..+.+... -++.
T Consensus 135 ~~~~~e~~~--~~~dG~~~~~~~~~~pi~d~~g~~~~~v~~~~DITerk~~~~e~~~~~~~~~l~~L~~r~~----~i~~ 208 (258)
T 3p7n_A 135 KPVLVEILN--YKKDGTPFRNAVLVAPIYDDDDELLYFLGSQVEVDDDQPNMGMARRERAAEMLKTLSPRQL----EVTT 208 (258)
T ss_dssp CCEEEEEEE--ECTTSCEEEEEEEEEEEECTTSCSEEEEEEEEEC-------CHHHHHHHHHHHTTSCHHHH----HHHH
T ss_pred CCeEEEEEE--EcCCCCEEEEeeEEEEEEcCCCCEEEEEEEeeecchhhhhhhHHHHHHHHHHHhhcCHHHH----HHHH
Confidence 555555444 5679999999999999999999999999999999999 5555554444433322211110 0111
Q ss_pred ecCCccEEehhHHHHHHhCCChhhhhcc
Q 002210 758 TDEDGRCLEWNDGMEKLSGLKREEAIER 785 (953)
Q Consensus 758 ~D~~G~i~~~N~a~~~l~G~~~eeliGk 785 (953)
....| ..|+..+..+|++...+...
T Consensus 209 ~~~~g---~~~~eia~~l~~s~~tv~~~ 233 (258)
T 3p7n_A 209 LVASG---LRNKEVAARLGLSEKTVKMH 233 (258)
T ss_dssp HHHTT---CCHHHHHHHHTCCHHHHHHH
T ss_pred HHHcC---CCHHHHHHHHCcCHHHHHHH
Confidence 11123 37899999999998887653
No 24
>3k3c_A Protein RV1364C/MT1410; sensor, PAS, signal transduction, fatty-acid binding, sigma regulator, signaling protein; HET: PLM; 1.62A {Mycobacterium tuberculosis} PDB: 3k3d_A
Probab=99.54 E-value=5e-14 Score=137.69 Aligned_cols=138 Identities=9% Similarity=0.072 Sum_probs=110.5
Q ss_pred HHHHHHHHHHhcCccEEEEc-CCCcEEecCHHHHHHhCCCcchhcCCCccccccCCcHHHHHHHHHHHhcccceEEEE--
Q 002210 609 ITNEMVRLIETAAVPILAVD-ASGNVNGWNSKAAELTGLTVDQAIGTALVDLVAGDSVDVVKNMLSSAFLEERNVEIK-- 685 (953)
Q Consensus 609 ~~~~l~~lle~~~~~I~~~D-~dg~i~~~N~a~~~l~G~~~~eliG~~~~dl~~~~~~~~~~~~l~~~l~~~~~~e~~-- 685 (953)
.+++|+.+++++|++|+++| .+|+|+++|+++++++|++ +++|+++.+++++.....+...+..++..+......
T Consensus 15 ~~~~~~~~~~~~~~~i~~~d~~~~~i~~~N~~~~~~~g~~--~~~G~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~ 92 (158)
T 3k3c_A 15 AAEDVRRIFEHIPAILVGLEGPDHRFVAVNAAYRGFSPLL--DTVGQPAREVYPELEGQQIYEMLDRVYQTGEPQSGSEW 92 (158)
T ss_dssp CHHHHHHHHHHCSSEEEEEETTTTEEEEECHHHHHHCTTC--CSTTSBHHHHSGGGGGTTHHHHHHHHHHHCCCEEEEEE
T ss_pred HHHHHHHHHhcCCceEEEEECCCcEeHHHHHHHHHHcCCc--hhcCCcHHHhCCchhHHHHHHHHHHHHHhCCcccccce
Confidence 34578999999999999999 9999999999999999999 899999999998877666667777777444433222
Q ss_pred -EEEcccCCC-CCEEEEEEEEEEeecCCCCEEEEEEEEEecchhHHHHHHHHHHHHHHHHHHhCCC
Q 002210 686 -LRAFGPRET-SGPVILVVNACCTQDTKENVIGVCFVGQDITGQKLVMDKYTRIQGDYVGIVSSPS 749 (953)
Q Consensus 686 -~~~~~~~~d-G~~~~v~v~~~pi~d~~g~v~gvv~v~~DITerk~~E~~L~~se~~~~~i~e~~~ 749 (953)
+... ...+ |..+|+.++..|+++.+|.+.|++++++|||++|++|++|+++...+...++++.
T Consensus 93 ~~~~~-~~~~~g~~~~~~~~~~pi~~~~g~~~g~~~~~~DITe~k~~e~~l~~~~~~l~~~v~~~~ 157 (158)
T 3k3c_A 93 RLQTD-YDGSGVEERYFDFVVTPRRRADGSIEGVQLIVDDVTSRVRARQAAEARVEELSERYRNVR 157 (158)
T ss_dssp EEEEE-SSSSCEEEEEEEEEEEEEECTTSCEEEEEEEEEECHHHHHHHHHHHHHHHHHHHC-----
T ss_pred eEEec-cCCCCcceEEEEEEEEEeECCCCCEEEEEEEEEehhHHHHHHHHHHHHHHHHHHHHhhcC
Confidence 2211 1123 6678999999999999999999999999999999999999999988888887763
No 25
>3f1p_B ARYL hydrocarbon receptor nuclear translocator; PAS domain, heterodimer, internal cavity, activator, angiogenesis, congenital erythrocytosis; 1.17A {Homo sapiens} SCOP: d.110.3.0 PDB: 3f1o_B* 3f1n_B 3h7w_B* 3h82_B* 1x0o_A 2hv1_A 4h6j_B 2b02_A* 2k7s_A 2a24_B
Probab=99.53 E-value=2.2e-14 Score=133.70 Aligned_cols=115 Identities=15% Similarity=0.123 Sum_probs=92.9
Q ss_pred HHHHHhCCCCCCCCeEeecCCccEEehhHHHHHHhCCChhhhhcccccccccccccccccccCcchHHHHHHHHHHHhc-
Q 002210 741 YVGIVSSPSALIPPIFMTDEDGRCLEWNDGMEKLSGLKREEAIERMLIGEVFTVKNFGCRVKNHDTLTKLRIVMNKVIS- 819 (953)
Q Consensus 741 ~~~i~e~~~~li~~I~~~D~~G~i~~~N~a~~~l~G~~~eeliGk~~~~~~~~~~~~~~~l~~~~~~~~~~~~l~~~~~- 819 (953)
+..+++++++ .|+..|.+|+++++|+++++++||++++++|+++...++| ++...+...+...+.
T Consensus 4 ~~ll~e~~~d---~i~~~d~~g~i~~~n~~~~~~~G~~~~el~g~~~~~~i~p-----------~d~~~~~~~~~~~~~~ 69 (121)
T 3f1p_B 4 KGLNVCQPTR---FISRHNIEGIFTFVDHRCVATVGYQPQELLGKNIVEFCHP-----------EDQQLLRDSFQQVVKL 69 (121)
T ss_dssp ----CCCCCE---EEEEECTTSBEEEECTTHHHHHSCCGGGTTTSBGGGGBCT-----------TTHHHHHHHHHHHTTS
T ss_pred ccceecCCCc---eEEEECCCceEEEECcchhhhhCCChHHHcCCCHHHeECH-----------HHHHHHHHHHHHHHhc
Confidence 4467788877 8999999999999999999999999999999987644443 334446666666664
Q ss_pred CCCcceEEEEEEccCCCEEEEEEEEEEeecC-CCCEEEEEEEEEeccHHHH
Q 002210 820 GQDADKILFGFFDQQGKYVEALLSANKRTNA-EGKISGILCFLHVASPELQ 869 (953)
Q Consensus 820 g~~~~~~e~~~~~kdG~~~~v~~s~~pi~d~-~G~i~g~v~v~~DITerK~ 869 (953)
++.....+++++++||+++|+..+..|+.|. +|++.+++|+.+|||++|+
T Consensus 70 ~~~~~~~e~r~~~~dG~~~w~~~~~~~~~~~~~g~~~~iv~~~~DIT~~kq 120 (121)
T 3f1p_B 70 KGQVLSVMFRFRSKNQEWLWMRTSSFTFQNPYSDEIEYIICTNTNVKNSSQ 120 (121)
T ss_dssp TTCCEEEEEEEECTTSCEEEEEEEEEEECCTTCCCCCEEEEEEEECCCC--
T ss_pred CCCcccEEEEEEecCCCEEEEEEEEEEEECCCCCceeEEEEEeEEcccccC
Confidence 4456788999999999999999999999987 7899999999999999884
No 26
>3ue6_A Aureochrome1; PAS/LOV domain, FMN-binding blue-light photoreceptor, signal protein; HET: FMN; 2.75A {Vaucheria frigida} PDB: 3ulf_A*
Probab=99.53 E-value=2.8e-14 Score=140.12 Aligned_cols=135 Identities=13% Similarity=0.072 Sum_probs=103.1
Q ss_pred chhHHHHHHHHHHHHHHHHHHhCCCCCCCCeEeecC---CccEEehhHHHHHHhCCChhhhhcccccccccccccccccc
Q 002210 725 TGQKLVMDKYTRIQGDYVGIVSSPSALIPPIFMTDE---DGRCLEWNDGMEKLSGLKREEAIERMLIGEVFTVKNFGCRV 801 (953)
Q Consensus 725 Terk~~E~~L~~se~~~~~i~e~~~~li~~I~~~D~---~G~i~~~N~a~~~l~G~~~eeliGk~~~~~~~~~~~~~~~l 801 (953)
..++++++++++.+..++.+++++++ +|+++|. +|+|+++|+++++++||+.++++|+++. .+++..
T Consensus 21 ~~~~~~~~~l~~~~~~~~~~~~~~~~---~i~~~d~~~~~g~i~~~N~~~~~l~G~~~~e~~g~~~~-~l~~~~------ 90 (166)
T 3ue6_A 21 DNPSKANRILEDPDYSLVKALQMAQQ---NFVITDASLPDNPIVYASRGFLTLTGYSLDQILGRNCR-FLQGPE------ 90 (166)
T ss_dssp ----------CCCCCHHHHHHHHTTS---CEEEEETTSTTCCEEEECHHHHHHHCCCHHHHTTSCGG-GGCCTT------
T ss_pred hhhhHHHHHHHHHHHHHHHHHhcCCc---eEEEEEccCCCCcEEEECHHHHHHhCcCHHHHcCCCHh-heeCCC------
Confidence 34566677777778889999999987 8999999 7999999999999999999999999864 333321
Q ss_pred cCcchHHHHHHHHHHHhcCCCcceEEEEEEccCCCEEEEEEEEEEeecCCCCEEEEEEEEEeccHHHHHHHH
Q 002210 802 KNHDTLTKLRIVMNKVISGQDADKILFGFFDQQGKYVEALLSANKRTNAEGKISGILCFLHVASPELQYALQ 873 (953)
Q Consensus 802 ~~~~~~~~~~~~l~~~~~g~~~~~~e~~~~~kdG~~~~v~~s~~pi~d~~G~i~g~v~v~~DITerK~~e~e 873 (953)
....+...+...+..+..+..++.+.+++|..+|+.++..|+.|.+|.+.|++++++|||++|+++..
T Consensus 91 ----~~~~~~~~~~~~~~~~~~~~~e~~~~~~~g~~~~~~~~~~~i~~~~g~~~~~~~~~~DITe~k~~~~~ 158 (166)
T 3ue6_A 91 ----TDPRAVDKIRNAITKGVDTSVCLLNYRQDGTTFWNLFFVAGLRDSKGNIVNYVGVQSKVSEDYAKLLV 158 (166)
T ss_dssp ----SCHHHHHHHHHHHHHTCCEEEEEEEECTTSCEEEEEEEEEEEECTTSCEEEEEEECCBCCHHHHHHHH
T ss_pred ----CCHHHHHHHHHHHhcCCceEEEEEEEcCCCCEEEEEEEEEeeeCCCCCEEEEEEEEEechHHHHHHHH
Confidence 11123334455555566677888899999999999999999999999999999999999999976643
No 27
>4hia_A LOV protein; PAS, HTH, signaling protein; HET: FMN; 1.95A {Rhodobacter sphaeroides} PDB: 4hnb_A* 4hj4_A* 4hj6_A* 4hj3_A*
Probab=99.53 E-value=9.2e-14 Score=138.56 Aligned_cols=122 Identities=7% Similarity=-0.028 Sum_probs=100.9
Q ss_pred HHHHHHHHhCCCCCCCCeEeecCC---ccEEehhHHHHHHhCCChhhhhcccccccccccccccccccCcchHHHHHHHH
Q 002210 738 QGDYVGIVSSPSALIPPIFMTDED---GRCLEWNDGMEKLSGLKREEAIERMLIGEVFTVKNFGCRVKNHDTLTKLRIVM 814 (953)
Q Consensus 738 e~~~~~i~e~~~~li~~I~~~D~~---G~i~~~N~a~~~l~G~~~eeliGk~~~~~~~~~~~~~~~l~~~~~~~~~~~~l 814 (953)
..+|+.+++++++ +|+++|.+ |+|+++|+++++++||+.++++|+++.. ++++ +....+...+
T Consensus 6 ~~~~~~~~~~~~~---~i~~~d~~~~~g~i~~~N~a~~~~~G~~~~e~~g~~~~~-~~~~----------~~~~~~~~~~ 71 (176)
T 4hia_A 6 FEKIRAVFDRSGV---ALTLVDMSLPEQPVVLANPPFLRMTGYTEGQILGFNCRF-LQRG----------DENAQARADI 71 (176)
T ss_dssp HHHHHHHHHHCSS---CCEEEETTSTTCCEEEECHHHHHHHTCCHHHHTTSCGGG-GCCT----------TCCHHHHHHH
T ss_pred HHHHHHHHhcCCC---cEEEEecCCCCCcEEEECHHHHHHHCcCHHHHcCCCcce-eeCC----------CCCHHHHHHH
Confidence 3568899999987 89999999 9999999999999999999999998653 3322 1112234445
Q ss_pred HHHhcCCCcceEEEEEEccCCCEEEEEEEEEEeecCCCCEEEEEEEEEeccHHHHHHHH
Q 002210 815 NKVISGQDADKILFGFFDQQGKYVEALLSANKRTNAEGKISGILCFLHVASPELQYALQ 873 (953)
Q Consensus 815 ~~~~~g~~~~~~e~~~~~kdG~~~~v~~s~~pi~d~~G~i~g~v~v~~DITerK~~e~e 873 (953)
...+..+.....++.+.++||+.+|+.++..|+.|.+|.+.+++++++|||++|++|.+
T Consensus 72 ~~~~~~~~~~~~e~~~~~~dG~~~~~~~~~~pi~~~~g~~~~~~~~~~DITe~k~~e~~ 130 (176)
T 4hia_A 72 RDALKLGRELQVVLRNYRANDEPFDNLLFLHPVGGRPDAPDYFLGSQFELGRSGNSEEA 130 (176)
T ss_dssp HHHHHHTCCEEEEEEEECTTCCEEEEEEEEEEESSBTTBCSEEEEEEEEESSSGGGHHH
T ss_pred HHHHHcCCceEEEEEEEcCCCCEEEEEEEEEEeeCCCCCeEEEEEEEEECcHhhHHHHH
Confidence 55555666777888899999999999999999999999999999999999999988865
No 28
>3f1p_B ARYL hydrocarbon receptor nuclear translocator; PAS domain, heterodimer, internal cavity, activator, angiogenesis, congenital erythrocytosis; 1.17A {Homo sapiens} SCOP: d.110.3.0 PDB: 3f1o_B* 3f1n_B 3h7w_B* 3h82_B* 1x0o_A 2hv1_A 4h6j_B 2b02_A* 2k7s_A 2a24_B
Probab=99.51 E-value=6.7e-14 Score=130.38 Aligned_cols=114 Identities=7% Similarity=0.124 Sum_probs=98.2
Q ss_pred HHHHHhcCccEEEEcCCCcEEecCHHHHHHhCCCcchhcCCCccccccCCcHHHHHHHHHHHh-cccceEEEEEEEcccC
Q 002210 614 VRLIETAAVPILAVDASGNVNGWNSKAAELTGLTVDQAIGTALVDLVAGDSVDVVKNMLSSAF-LEERNVEIKLRAFGPR 692 (953)
Q Consensus 614 ~~lle~~~~~I~~~D~dg~i~~~N~a~~~l~G~~~~eliG~~~~dl~~~~~~~~~~~~l~~~l-~~~~~~e~~~~~~~~~ 692 (953)
..+++++++.|+.+|.+|+++++|+++++++||++++++|+++.+++||++.+.+...+..++ ..+.....+++. .+
T Consensus 5 ~ll~e~~~d~i~~~d~~g~i~~~n~~~~~~~G~~~~el~g~~~~~~i~p~d~~~~~~~~~~~~~~~~~~~~~e~r~--~~ 82 (121)
T 3f1p_B 5 GLNVCQPTRFISRHNIEGIFTFVDHRCVATVGYQPQELLGKNIVEFCHPEDQQLLRDSFQQVVKLKGQVLSVMFRF--RS 82 (121)
T ss_dssp ---CCCCCEEEEEECTTSBEEEECTTHHHHHSCCGGGTTTSBGGGGBCTTTHHHHHHHHHHHTTSTTCCEEEEEEE--EC
T ss_pred cceecCCCceEEEECCCceEEEECcchhhhhCCChHHHcCCCHHHeECHHHHHHHHHHHHHHHhcCCCcccEEEEE--Ee
Confidence 357899999999999999999999999999999999999999999999999998888888887 445556666555 56
Q ss_pred CCCCEEEEEEEEEEeecC-CCCEEEEEEEEEecchhHH
Q 002210 693 ETSGPVILVVNACCTQDT-KENVIGVCFVGQDITGQKL 729 (953)
Q Consensus 693 ~dG~~~~v~v~~~pi~d~-~g~v~gvv~v~~DITerk~ 729 (953)
++|..+|+.++..|+++. +|.+.+++++.+|||++|+
T Consensus 83 ~dG~~~w~~~~~~~~~~~~~g~~~~iv~~~~DIT~~kq 120 (121)
T 3f1p_B 83 KNQEWLWMRTSSFTFQNPYSDEIEYIICTNTNVKNSSQ 120 (121)
T ss_dssp TTSCEEEEEEEEEEECCTTCCCCCEEEEEEEECCCC--
T ss_pred cCCCEEEEEEEEEEEECCCCCceeEEEEEeEEcccccC
Confidence 799999999999999987 7889999999999999986
No 29
>1d06_A Nitrogen fixation regulatory protein FIXL; oxygen sensor, histidine kinase, PAS, high-resolution, two-C system, signaling protein; HET: HEM; 1.40A {Sinorhizobium meliloti} SCOP: d.110.3.2 PDB: 1ew0_A*
Probab=99.50 E-value=2e-13 Score=129.04 Aligned_cols=125 Identities=11% Similarity=0.087 Sum_probs=96.7
Q ss_pred chhHHHHHHHHHHHHHHHHHHhCCCCCCCCeEeecCCccEEehhHHHHHHhCCChhhhhcccccccccccccccccccCc
Q 002210 725 TGQKLVMDKYTRIQGDYVGIVSSPSALIPPIFMTDEDGRCLEWNDGMEKLSGLKREEAIERMLIGEVFTVKNFGCRVKNH 804 (953)
Q Consensus 725 Terk~~E~~L~~se~~~~~i~e~~~~li~~I~~~D~~G~i~~~N~a~~~l~G~~~eeliGk~~~~~~~~~~~~~~~l~~~ 804 (953)
|+++++|++|++++.+|+.+++++++ +|+++|.+|+|++||+++++++||+++|++|+++.. +++++
T Consensus 2 ~~~~~~e~~l~~~~~~~~~l~~~~~d---~i~~~d~~g~i~~~N~a~~~l~Gy~~~eliG~~~~~-l~~~~--------- 68 (130)
T 1d06_A 2 SHMLETEDVVRARDAHLRSILDTVPD---ATVVSATDGTIVSFNAAAVRQFGYAEEEVIGQNLRI-LMPEP--------- 68 (130)
T ss_dssp CHHHHHHHHHHHHTSCHHHHHTTCSS---EEEEEETTSBEEEECHHHHHHHCCCHHHHTTSBGGG-GSCTT---------
T ss_pred chHHHHHHHHHHHHHHHHHHHhhCcC---eEEEECCCCeEEEEcHHHHHHHCCCHHHHcCCcHHH-HCCch---------
Confidence 78999999999999999999999988 899999999999999999999999999999998753 33321
Q ss_pred chHHHHHHHHHHHhc-CCC---cceEEEEEEccCCCEEEEEEEEEEeecCCCCEEEEEEEEEecc
Q 002210 805 DTLTKLRIVMNKVIS-GQD---ADKILFGFFDQQGKYVEALLSANKRTNAEGKISGILCFLHVAS 865 (953)
Q Consensus 805 ~~~~~~~~~l~~~~~-g~~---~~~~e~~~~~kdG~~~~v~~s~~pi~d~~G~i~g~v~v~~DIT 865 (953)
........+..... +.. ....++..+++||+.+|+.++..|+.+.+ ..+++++++|||
T Consensus 69 -~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~kdG~~~~~~~~~~~~~~~~--~~~~~~~~~DIT 130 (130)
T 1d06_A 69 -YRHEHDGYLQRYMATGEKRIIGIDRVVSGQRKDGSTFPMKLAVGEMRSGG--ERFFTGFIRDLT 130 (130)
T ss_dssp -HHHHHHHHHHHHHHHCCCSSTTSCEEEEEECTTSCEEEEEEEEEEEEETT--EEEEEEEEEECC
T ss_pred -hHHHHHHHHHHHHhcCCccccCCeeEEEEEeCCCCEEEEEEEEEEEEECC--eEEEEEEEEECc
Confidence 11111222222221 221 12457788999999999999999997643 345889999998
No 30
>3nja_A Probable ggdef family protein; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; 2.37A {Chromobacterium violaceum}
Probab=99.50 E-value=9.7e-14 Score=128.40 Aligned_cols=122 Identities=12% Similarity=0.166 Sum_probs=89.1
Q ss_pred HHHHHHHHHHHHhCCCCCCCCeEeecCCccEEehhHHHHHHhCCChhhhhc--ccccccccccccccccccCcchHHHHH
Q 002210 734 YTRIQGDYVGIVSSPSALIPPIFMTDEDGRCLEWNDGMEKLSGLKREEAIE--RMLIGEVFTVKNFGCRVKNHDTLTKLR 811 (953)
Q Consensus 734 L~~se~~~~~i~e~~~~li~~I~~~D~~G~i~~~N~a~~~l~G~~~eeliG--k~~~~~~~~~~~~~~~l~~~~~~~~~~ 811 (953)
|++++++|+.++++++. ++|.+|.+|+++++|+++++++|++.+++.| ..+...+ +++....+.
T Consensus 2 l~~~~~~l~~~~~~~~~---~i~~~d~~~~~~~~n~~~~~~~G~~~~~~~~~~~~~~~~~-----------~~~d~~~~~ 67 (125)
T 3nja_A 2 NAMAEKLLHTAESDAGI---GSWVLHMESGRLEWSQAVHDIFGTDSATFDATEDAYFQRV-----------HPDDRARVR 67 (125)
T ss_dssp ---------------CC---EEEEEETTTTEEEECHHHHHHHTCCTTTCCCBHHHHHHHB-----------CTTTHHHHH
T ss_pred cHHHHHHHHHHHHhCCe---eEEEEEcCCCcEEECHHHHHHhCCCcccccccHHHHHhhc-----------ChhHHHHHH
Confidence 56677889999999987 8999999999999999999999999999988 3333222 234444566
Q ss_pred HHHHHHhcCCCcceEEEEEEccCCCEEEEEEEEEEeecCCCCEEEEEEEEEeccHHHH
Q 002210 812 IVMNKVISGQDADKILFGFFDQQGKYVEALLSANKRTNAEGKISGILCFLHVASPELQ 869 (953)
Q Consensus 812 ~~l~~~~~g~~~~~~e~~~~~kdG~~~~v~~s~~pi~d~~G~i~g~v~v~~DITerK~ 869 (953)
..+...+.++.....++++.+++|+.+|+.++..|+.|.+|++.+++|+++|||++|+
T Consensus 68 ~~~~~~~~~~~~~~~e~~~~~~~g~~~~~~~~~~~~~~~~g~~~~~~g~~~DITe~k~ 125 (125)
T 3nja_A 68 RELDRHVLGDRPFDVEYRIVRPDGQVRELLERNHIQRQASGQVDHLWGTVIDMTEHKQ 125 (125)
T ss_dssp HHHHHHHHSCCCEEEEEEEECTTSCEEEEEEEEEEEECTTSCEEEEEEEEEECCC---
T ss_pred HHHHHHHhcCCCceEEEEEECCCCCEEEEEEeeEEEECCCCCEEEEEEEEEecccccC
Confidence 6777777777778889999999999999999999999999999999999999999884
No 31
>3ue6_A Aureochrome1; PAS/LOV domain, FMN-binding blue-light photoreceptor, signal protein; HET: FMN; 2.75A {Vaucheria frigida} PDB: 3ulf_A*
Probab=99.48 E-value=1e-13 Score=136.08 Aligned_cols=126 Identities=15% Similarity=0.124 Sum_probs=106.3
Q ss_pred HHHHHHHHHHHHHhcCccEEEEcC---CCcEEecCHHHHHHhCCCcchhcCCCccccccCCcHHHHHHHHHHHhcccceE
Q 002210 606 LRIITNEMVRLIETAAVPILAVDA---SGNVNGWNSKAAELTGLTVDQAIGTALVDLVAGDSVDVVKNMLSSAFLEERNV 682 (953)
Q Consensus 606 L~~~~~~l~~lle~~~~~I~~~D~---dg~i~~~N~a~~~l~G~~~~eliG~~~~dl~~~~~~~~~~~~l~~~l~~~~~~ 682 (953)
+++....+..++++++++|+++|. +|+|+++|+++++++||+.++++|+++..++++.........+...+..+...
T Consensus 30 l~~~~~~~~~~~~~~~~~i~~~d~~~~~g~i~~~N~~~~~l~G~~~~e~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~ 109 (166)
T 3ue6_A 30 LEDPDYSLVKALQMAQQNFVITDASLPDNPIVYASRGFLTLTGYSLDQILGRNCRFLQGPETDPRAVDKIRNAITKGVDT 109 (166)
T ss_dssp -CCCCCHHHHHHHHTTSCEEEEETTSTTCCEEEECHHHHHHHCCCHHHHTTSCGGGGCCTTSCHHHHHHHHHHHHHTCCE
T ss_pred HHHHHHHHHHHHhcCCceEEEEEccCCCCcEEEECHHHHHHhCcCHHHHcCCCHhheeCCCCCHHHHHHHHHHHhcCCce
Confidence 444556788899999999999999 79999999999999999999999999988888777666666666666555555
Q ss_pred EEEEEEcccCCCCCEEEEEEEEEEeecCCCCEEEEEEEEEecchhHHHHHH
Q 002210 683 EIKLRAFGPRETSGPVILVVNACCTQDTKENVIGVCFVGQDITGQKLVMDK 733 (953)
Q Consensus 683 e~~~~~~~~~~dG~~~~v~v~~~pi~d~~g~v~gvv~v~~DITerk~~E~~ 733 (953)
..++.. .+++|..+|+.++..|+.+.+|.+.|++++++|||++|+++..
T Consensus 110 ~~e~~~--~~~~g~~~~~~~~~~~i~~~~g~~~~~~~~~~DITe~k~~~~~ 158 (166)
T 3ue6_A 110 SVCLLN--YRQDGTTFWNLFFVAGLRDSKGNIVNYVGVQSKVSEDYAKLLV 158 (166)
T ss_dssp EEEEEE--ECTTSCEEEEEEEEEEEECTTSCEEEEEEECCBCCHHHHHHHH
T ss_pred EEEEEE--EcCCCCEEEEEEEEEeeeCCCCCEEEEEEEEEechHHHHHHHH
Confidence 555444 4568999999999999999999999999999999999998776
No 32
>3nja_A Probable ggdef family protein; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; 2.37A {Chromobacterium violaceum}
Probab=99.47 E-value=2.3e-13 Score=125.81 Aligned_cols=122 Identities=14% Similarity=0.110 Sum_probs=92.0
Q ss_pred HHHHHHHHHHHHHhcCccEEEEcCCCcEEecCHHHHHHhCCCcchhcC--CCccccccCCcHHHHHHHHHHHhcccceEE
Q 002210 606 LRIITNEMVRLIETAAVPILAVDASGNVNGWNSKAAELTGLTVDQAIG--TALVDLVAGDSVDVVKNMLSSAFLEERNVE 683 (953)
Q Consensus 606 L~~~~~~l~~lle~~~~~I~~~D~dg~i~~~N~a~~~l~G~~~~eliG--~~~~dl~~~~~~~~~~~~l~~~l~~~~~~e 683 (953)
|++++++++.+++++++++|.+|.+|+++++|+++.+++|++.++++| ..+.+++++++.+.+...+..++..+....
T Consensus 2 l~~~~~~l~~~~~~~~~~i~~~d~~~~~~~~n~~~~~~~G~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~ 81 (125)
T 3nja_A 2 NAMAEKLLHTAESDAGIGSWVLHMESGRLEWSQAVHDIFGTDSATFDATEDAYFQRVHPDDRARVRRELDRHVLGDRPFD 81 (125)
T ss_dssp ---------------CCEEEEEETTTTEEEECHHHHHHHTCCTTTCCCBHHHHHHHBCTTTHHHHHHHHHHHHHSCCCEE
T ss_pred cHHHHHHHHHHHHhCCeeEEEEEcCCCcEEECHHHHHHhCCCcccccccHHHHHhhcChhHHHHHHHHHHHHHhcCCCce
Confidence 456677889999999999999999999999999999999999999998 556688899999988888888875555566
Q ss_pred EEEEEcccCCCCCEEEEEEEEEEeecCCCCEEEEEEEEEecchhHH
Q 002210 684 IKLRAFGPRETSGPVILVVNACCTQDTKENVIGVCFVGQDITGQKL 729 (953)
Q Consensus 684 ~~~~~~~~~~dG~~~~v~v~~~pi~d~~g~v~gvv~v~~DITerk~ 729 (953)
.+++. .+++|..+|+.++..|+.+.+|.+.+++++++|||++|+
T Consensus 82 ~e~~~--~~~~g~~~~~~~~~~~~~~~~g~~~~~~g~~~DITe~k~ 125 (125)
T 3nja_A 82 VEYRI--VRPDGQVRELLERNHIQRQASGQVDHLWGTVIDMTEHKQ 125 (125)
T ss_dssp EEEEE--ECTTSCEEEEEEEEEEEECTTSCEEEEEEEEEECCC---
T ss_pred EEEEE--ECCCCCEEEEEEeeEEEECCCCCEEEEEEEEEecccccC
Confidence 65554 456899999999999999999999999999999999984
No 33
>3t50_A Blue-light-activated histidine kinase; PAS superfamily, blue-light photoreceptor, FMN binding, TRAN; HET: FMN; 1.64A {Brucella melitensis}
Probab=99.47 E-value=2.1e-13 Score=127.59 Aligned_cols=123 Identities=13% Similarity=0.114 Sum_probs=96.4
Q ss_pred HHHhcCccEEEEcC---CCcEEecCHHHHHHhCCCcchhcCCCccccccCCcHHHHHHHHHHHhcccceEEEEEEEcccC
Q 002210 616 LIETAAVPILAVDA---SGNVNGWNSKAAELTGLTVDQAIGTALVDLVAGDSVDVVKNMLSSAFLEERNVEIKLRAFGPR 692 (953)
Q Consensus 616 lle~~~~~I~~~D~---dg~i~~~N~a~~~l~G~~~~eliG~~~~dl~~~~~~~~~~~~l~~~l~~~~~~e~~~~~~~~~ 692 (953)
++++++++|+++|. +|+|+++|+++++++|++.++++|+++.+++++.........+...+..+.....++.. .+
T Consensus 2 ~~~~~~~~i~~~d~~~~~g~i~~~N~~~~~l~g~~~~e~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~--~~ 79 (128)
T 3t50_A 2 ASEFTLMPMLITNPHLPDNPIVFANPAFLKLTGYEADEVMGRNCRFLQGHGTDPAHVRAIKSAIAAEKPIDIDIIN--YK 79 (128)
T ss_dssp CCCCCSSCEEEECTTSTTCCEEEECHHHHHHHCCCHHHHTTSCGGGGCCTTSCHHHHHHHHHHHHTTCCEEEEEEE--EC
T ss_pred ccccCcccEEEecCCCCCCcEEEEcHHHHHHhCcCHHHHcCCCHhhhcCCccCHHHHHHHHHHHHcCCCceeEEEE--Ec
Confidence 46789999999999 99999999999999999999999999998888777666666666666555555555444 45
Q ss_pred CCCCEEEEEEEEEEeecCCCCEEEEEEEEEecchhHHHHHHHHHHHHH
Q 002210 693 ETSGPVILVVNACCTQDTKENVIGVCFVGQDITGQKLVMDKYTRIQGD 740 (953)
Q Consensus 693 ~dG~~~~v~v~~~pi~d~~g~v~gvv~v~~DITerk~~E~~L~~se~~ 740 (953)
++|..+|+.++..|+.+.+|.+.|++++++|||++|++|++..+.+++
T Consensus 80 ~~g~~~~~~~~~~~i~~~~g~~~~~~~~~~DITe~k~~e~~~~~~~~~ 127 (128)
T 3t50_A 80 KSGEAFWNRLHISPVHNANGRLQHFVSSQLDVTLELVPRGSLEHHHHH 127 (128)
T ss_dssp TTCCEEEEEEEEEEEECTTSCEEEEEEEEEECHHHHC-----------
T ss_pred CCCCEEEEEEEEEEEECCCCCEEEEEEEEEEcchhhhhhhhhhhcccC
Confidence 689999999999999999999999999999999999999998776654
No 34
>3kx0_X Uncharacterized protein RV1364C/MT1410; PAS domain, sensory domain, mycobacteium tuberculos molecule binding domain; 2.30A {Mycobacterium tuberculosis}
Probab=99.47 E-value=8.9e-14 Score=140.70 Aligned_cols=140 Identities=10% Similarity=0.123 Sum_probs=97.9
Q ss_pred HHHHHHHHHHHhcCccEEEEc-CCCcEEecCHHHHHHhCCCcchhcCCCccccccCCcHHHHHHHHHHHhcccceEEEE-
Q 002210 608 IITNEMVRLIETAAVPILAVD-ASGNVNGWNSKAAELTGLTVDQAIGTALVDLVAGDSVDVVKNMLSSAFLEERNVEIK- 685 (953)
Q Consensus 608 ~~~~~l~~lle~~~~~I~~~D-~dg~i~~~N~a~~~l~G~~~~eliG~~~~dl~~~~~~~~~~~~l~~~l~~~~~~e~~- 685 (953)
..+++++.+++++|++|+++| .+|+|+++|+++++++|++ +++|+++.+++++.....+...+..++..+......
T Consensus 34 ~~~~~l~~l~~~~~~~i~~~d~~~g~i~~~N~a~~~l~G~~--~~~G~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~ 111 (185)
T 3kx0_X 34 GAAEDVRRIFEHIPAILVGLEGPDHRFVAVNAAYRGFSPLL--DTVGQPAREVYPELEGQQIYEMLDRVYQTGEPQSGSE 111 (185)
T ss_dssp CCHHHHHHHHHHCSSEEEEEETTTTEEEEECHHHHHHCCCC--SCTTSBHHHHCTTSCSSSSHHHHHHHHHHCCCEEEEE
T ss_pred hhHHHHHHHHhcCCceEEEEECCCcEEEEEcHHHHHHcCCc--cccCCcHHHHCCchhhhhHHHHHHHHHHcCCcccccc
Confidence 445678999999999999999 9999999999999999999 899999999888766555556677776444443322
Q ss_pred EEEcccCC-C-CCEEEEEEEEEEeecCCCCEEEEEEEEEecchhHHHHHH----HHHHHHHHHHHHhCCC
Q 002210 686 LRAFGPRE-T-SGPVILVVNACCTQDTKENVIGVCFVGQDITGQKLVMDK----YTRIQGDYVGIVSSPS 749 (953)
Q Consensus 686 ~~~~~~~~-d-G~~~~v~v~~~pi~d~~g~v~gvv~v~~DITerk~~E~~----L~~se~~~~~i~e~~~ 749 (953)
......+. + |..+|+.++..|+++.+|.+.|++++++|||++|++|++ |++++++++.++++++
T Consensus 112 ~~~~~~~~~~gg~~~~~~~~~~pi~~~~g~~~g~~~~~~DITerk~~e~~~~~ll~~~~~~l~~~~~~~~ 181 (185)
T 3kx0_X 112 WRLQTDYDGSGVEERYFDFVVTPRRRADGSIEGVQLIVDDVTSRVRARQAAEARVEELSERYRNVRDSAT 181 (185)
T ss_dssp EEEC--------CCEEEEEEEEEEECTTSCEEEEEEEEEECHHHHTTCC---------------------
T ss_pred eeEEeeccCCCCccEEEEEEEEEEECCCCCEEEEEEEEEeCCHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Confidence 22211111 2 677999999999999999999999999999999999999 9999999999998874
No 35
>3f1p_A Endothelial PAS domain-containing protein 1; PAS domain, heterodimer, internal cavity, activator, angiogenesis, congenital erythrocytosis; 1.17A {Homo sapiens} SCOP: d.110.3.7 PDB: 3f1o_A* 3f1n_A 3h7w_A* 3h82_A* 1p97_A 2a24_A 4h6j_A
Probab=99.46 E-value=8.7e-14 Score=128.63 Aligned_cols=105 Identities=14% Similarity=0.073 Sum_probs=90.0
Q ss_pred CeEeecCCccEEehhHHHHHHhCCChhhhhcccccccccccccccccccCcchHHHHHHHHHHHhcCCCcceEEEEEEcc
Q 002210 754 PIFMTDEDGRCLEWNDGMEKLSGLKREEAIERMLIGEVFTVKNFGCRVKNHDTLTKLRIVMNKVISGQDADKILFGFFDQ 833 (953)
Q Consensus 754 ~I~~~D~~G~i~~~N~a~~~l~G~~~eeliGk~~~~~~~~~~~~~~~l~~~~~~~~~~~~l~~~~~g~~~~~~e~~~~~k 833 (953)
.|+..|.+|+++++|+++++++||++++++|+.+...++| ++...+...+...+.++.....+++++++
T Consensus 11 ~i~~~d~~g~i~~~n~~~~~~~Gy~~~el~g~~~~~~~~p-----------~d~~~~~~~~~~~~~~~~~~~~e~r~~~~ 79 (117)
T 3f1p_A 11 FLSEHSMDMKFTYCDDRITELIGYHPEELLGRSAYEFYHA-----------LDSENMTKSHQNLCTKGQVVSGQYRMLAK 79 (117)
T ss_dssp EEEEECTTCBEEEECTHHHHHHCCCHHHHTTSBGGGGBCG-----------GGHHHHHHHHHHHHHHSEEECCCEEEECT
T ss_pred EEEEECCCceEEEECcChhhhhCCCHHHHcCCchhheECH-----------HHHHHHHHHHHHHHhCCCeeeeEEEEEec
Confidence 6899999999999999999999999999999987644433 33445666667777766667779999999
Q ss_pred CCCEEEEEEEEEEeecC-CCCEEEEEEEEEeccHHHH
Q 002210 834 QGKYVEALLSANKRTNA-EGKISGILCFLHVASPELQ 869 (953)
Q Consensus 834 dG~~~~v~~s~~pi~d~-~G~i~g~v~v~~DITerK~ 869 (953)
||+++|+..+..|+.|. +|++.+++|+.+|||++|+
T Consensus 80 dG~~~w~~~~~~~~~d~~~g~~~~iv~~~~DITer~~ 116 (117)
T 3f1p_A 80 HGGYVWLETQGTVIYNPRNLQPQCIMCVNYVLSEIEK 116 (117)
T ss_dssp TSSEEEEEEEEEEEEETTTTEEEEEEEEEEECSCCBC
T ss_pred CCCEEEEEEeeEEEECCCCCCceEEEEEeeecccccc
Confidence 99999999999999998 8999999999999999874
No 36
>4dj3_A Period circadian protein homolog 3; PAS domain, circadian rhythm, protein binding; 2.50A {Mus musculus}
Probab=99.45 E-value=5.4e-13 Score=146.01 Aligned_cols=222 Identities=14% Similarity=0.053 Sum_probs=146.3
Q ss_pred HHHhcCccEEEEcCC-CcEEecCHHHHHHhCCCcchhcCCCccccccCCcHHHHHHHHHHHh----------------cc
Q 002210 616 LIETAAVPILAVDAS-GNVNGWNSKAAELTGLTVDQAIGTALVDLVAGDSVDVVKNMLSSAF----------------LE 678 (953)
Q Consensus 616 lle~~~~~I~~~D~d-g~i~~~N~a~~~l~G~~~~eliG~~~~dl~~~~~~~~~~~~l~~~l----------------~~ 678 (953)
++++...-+++++.+ |+|+|+|+.+..++||+.++++|+++.+++||+|...+...+.... ..
T Consensus 31 ~L~aldgF~~vvs~~~G~i~yvS~~~~~~Lg~~~~el~g~s~~d~ihp~D~~~f~~ql~~~~lP~~~~~~~~~~~~~~~~ 110 (317)
T 4dj3_A 31 TSKNTDTFAAVFSFLSGRLVHISEQAALILNSKRGFLKSVHFVDLLAPQDVRAFYAHTAPTQLPFWNNWTQRASQYECAP 110 (317)
T ss_dssp HTSCTTEEEEEEETTTCBEEEECTTHHHHTTCCHHHHHTSBGGGGBCGGGHHHHHHHTCTTTCCCCC----------CCC
T ss_pred HHhccCCEEEEEEcCCcEEEEECCHHHHHcCCCHHHHcCCchhhhcChhhHHHHHHhhcccCCCCcCCCcccccccCCCC
Confidence 578888888899986 9999999999999999999999999999999999998876542110 11
Q ss_pred cceEEEEEEEcccCCCCCEEEEEEEEEE--eec---CCCCEEEEEEEEEecchhHHHHHHHHHHHHHHHHHHhCCCCCCC
Q 002210 679 ERNVEIKLRAFGPRETSGPVILVVNACC--TQD---TKENVIGVCFVGQDITGQKLVMDKYTRIQGDYVGIVSSPSALIP 753 (953)
Q Consensus 679 ~~~~e~~~~~~~~~~dG~~~~v~v~~~p--i~d---~~g~v~gvv~v~~DITerk~~E~~L~~se~~~~~i~e~~~~li~ 753 (953)
...+-.+++.....++.+...+.+...- ... .++....++.+.+=.+.-+..+ ..+.. +.
T Consensus 111 ~rsF~CRmr~g~~~~~~~y~~~~~~g~l~~~~~~~~~~~~~~clv~v~~~~~~~~~~~-----------~~~~~-~~--- 175 (317)
T 4dj3_A 111 AKPFFCRICGGGDREKRHYSPFRILPYLVHVHSSAQPEPEPCCLTLVEKIHSGYEAPR-----------IPVDK-RI--- 175 (317)
T ss_dssp CCCEEEEECCCCCSSSCCCEEEEEEEEEEECCCCSSSCSCEEEEEEEEECCCTTSSSC-----------CCGGG-CE---
T ss_pred CceEEEEEeCCCCCCCCceEEEEEEeEEEeccCCCCCCCCceEEEEEEecCCCcCCCC-----------cccCC-Cc---
Confidence 2223333333211111223333333211 111 1223333443333222111000 01111 12
Q ss_pred CeEeecCCccEEehhHHHHHHhCCChhhhhcccccccccccccccccccCcchHHHHHHHHHHHhcCCCc---ceEEEEE
Q 002210 754 PIFMTDEDGRCLEWNDGMEKLSGLKREEAIERMLIGEVFTVKNFGCRVKNHDTLTKLRIVMNKVISGQDA---DKILFGF 830 (953)
Q Consensus 754 ~I~~~D~~G~i~~~N~a~~~l~G~~~eeliGk~~~~~~~~~~~~~~~l~~~~~~~~~~~~l~~~~~g~~~---~~~e~~~ 830 (953)
.+...+.+|+++|+|+++..++||.++|++|+.+.+.++|++ ...+...+...+.++.. ...++|+
T Consensus 176 Fitrh~~dG~~~yvs~~~~~lLGY~peELig~s~~~~vHPdD-----------~~~~~~~~~~~l~~~~~~~f~s~~yR~ 244 (317)
T 4dj3_A 176 FTTTHTPGCVFLEVDERAVPLLGYLPQDLIGTSILTYLHPED-----------RPLMVAIHQKVLKYAGHPPFEHSPVRF 244 (317)
T ss_dssp EEEEECTTSBEEEECTTHHHHHSCCHHHHTTSBGGGGBCTTT-----------TTHHHHHHHHHHHTTTSCCEECCCEEE
T ss_pred eEEEecCCCeEEEEChHHhhhcCcChHHHcCCCHHHeECHHH-----------HHHHHHHHHHHHHcCCCccccceEEEE
Confidence 577889999999999999999999999999999876665542 23355556666665443 3578999
Q ss_pred EccCCCEEEEEEEEEEeecC-CCCEEEEEEEEEe
Q 002210 831 FDQQGKYVEALLSANKRTNA-EGKISGILCFLHV 863 (953)
Q Consensus 831 ~~kdG~~~~v~~s~~pi~d~-~G~i~g~v~v~~D 863 (953)
+++||.++|+..+..+++|. .+++..++|..+-
T Consensus 245 ~~kdG~~vwvet~~~~~~np~s~~~e~II~~h~v 278 (317)
T 4dj3_A 245 CTQNGEYVILDSSWSSFVNPWSRKVSFIIGRHKV 278 (317)
T ss_dssp ECTTSCEEEEEEEEEEEECSSSCCEEEEEEEEEE
T ss_pred EccCCCEEEEEEEEEEEECCCCCcccEEEEEEEe
Confidence 99999999999999999986 4666677777663
No 37
>3bwl_A Sensor protein; structural genomics, APC87707.1, PAS domain, HTR-like protei protein structure initiative; HET: MSE I3A; 1.73A {Haloarcula marismortui atcc 43049}
Probab=99.45 E-value=7.5e-13 Score=123.78 Aligned_cols=124 Identities=11% Similarity=0.071 Sum_probs=93.9
Q ss_pred ecchhHHHHHHHHHHHHHHHHHHhCCCCCCCCeEeecCCccEEehhHHHHHHhCCChhhhh--ccccccccccccccccc
Q 002210 723 DITGQKLVMDKYTRIQGDYVGIVSSPSALIPPIFMTDEDGRCLEWNDGMEKLSGLKREEAI--ERMLIGEVFTVKNFGCR 800 (953)
Q Consensus 723 DITerk~~E~~L~~se~~~~~i~e~~~~li~~I~~~D~~G~i~~~N~a~~~l~G~~~eeli--Gk~~~~~~~~~~~~~~~ 800 (953)
|+|++|++|++|++++.+|+.+++++++ +|+++|.+|+|+++|+++++++||++++++ |+.+.. +++.
T Consensus 1 ~~t~r~~~e~~L~~~~~~~~~l~e~~~~---~i~~~d~~g~i~~~N~a~~~~~G~~~~el~g~g~~~~~-~~~~------ 70 (126)
T 3bwl_A 1 SNAERKRREKRLEETSSRLEALFENSPD---MIDVLDADGTICEVNQRFCAELGYDESEVLGRSIWEFD-LMFD------ 70 (126)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHCSS---EEEEECTTCBEEEECHHHHHHHTCCGGGTTTSBGGGTB-TTCC------
T ss_pred CchhHHHHHHHHHHHHHHHHHHHhhCCc---EEEEEcCCCCEEEEcHHHHHHhCCCHHHHhhCCCchhh-ccCC------
Confidence 6899999999999999999999999988 899999999999999999999999999994 565542 2221
Q ss_pred ccCcchHHHHHHHHHHHhcCCCcceEEEEEEccCCCEEEEEEEEEEeecCCCCEEEEEEEEEecc
Q 002210 801 VKNHDTLTKLRIVMNKVISGQDADKILFGFFDQQGKYVEALLSANKRTNAEGKISGILCFLHVAS 865 (953)
Q Consensus 801 l~~~~~~~~~~~~l~~~~~g~~~~~~e~~~~~kdG~~~~v~~s~~pi~d~~G~i~g~v~v~~DIT 865 (953)
. ..+...+.... .+....++.++.++||+.+|+.++..++. .+|.. +++++++|||
T Consensus 71 -----~-~~~~~~~~~~~-~~~~~~~e~~~~~~dG~~~~~~~~~~~~~-~~~~~-~~~~~~~DIT 126 (126)
T 3bwl_A 71 -----A-EDVQTQLSGFS-VDERRKFEGLYERRDGSTMSVEVHLLRFN-LEGED-RFLAISRDIT 126 (126)
T ss_dssp -----H-HHHHHHHHTCC-TTCEEEEEEEEECTTSCEEEEEEEEEEEE-ETTEE-EEEEEEEEC-
T ss_pred -----H-HHHHHHHHHHh-cCCCcceEEEEEeCCCCEEEEEEEeEEEe-cCCcE-EEEEEEEeCC
Confidence 1 11222222222 22234566778899999999999888874 34444 5788999998
No 38
>3t50_A Blue-light-activated histidine kinase; PAS superfamily, blue-light photoreceptor, FMN binding, TRAN; HET: FMN; 1.64A {Brucella melitensis}
Probab=99.45 E-value=6.2e-13 Score=124.27 Aligned_cols=117 Identities=16% Similarity=0.108 Sum_probs=91.6
Q ss_pred HHhCCCCCCCCeEeecC---CccEEehhHHHHHHhCCChhhhhcccccccccccccccccccCcchHHHHHHHHHHHhcC
Q 002210 744 IVSSPSALIPPIFMTDE---DGRCLEWNDGMEKLSGLKREEAIERMLIGEVFTVKNFGCRVKNHDTLTKLRIVMNKVISG 820 (953)
Q Consensus 744 i~e~~~~li~~I~~~D~---~G~i~~~N~a~~~l~G~~~eeliGk~~~~~~~~~~~~~~~l~~~~~~~~~~~~l~~~~~g 820 (953)
+++++++ +|+++|. +|+|+++|+++++++||+.++++|+.+. .+++.. ....+...+...+..
T Consensus 2 ~~~~~~~---~i~~~d~~~~~g~i~~~N~~~~~l~g~~~~e~~g~~~~-~~~~~~----------~~~~~~~~~~~~~~~ 67 (128)
T 3t50_A 2 ASEFTLM---PMLITNPHLPDNPIVFANPAFLKLTGYEADEVMGRNCR-FLQGHG----------TDPAHVRAIKSAIAA 67 (128)
T ss_dssp CCCCCSS---CEEEECTTSTTCCEEEECHHHHHHHCCCHHHHTTSCGG-GGCCTT----------SCHHHHHHHHHHHHT
T ss_pred ccccCcc---cEEEecCCCCCCcEEEEcHHHHHHhCcCHHHHcCCCHh-hhcCCc----------cCHHHHHHHHHHHHc
Confidence 3456665 8999999 9999999999999999999999999865 333221 112234445555666
Q ss_pred CCcceEEEEEEccCCCEEEEEEEEEEeecCCCCEEEEEEEEEeccHHHHHHHHH
Q 002210 821 QDADKILFGFFDQQGKYVEALLSANKRTNAEGKISGILCFLHVASPELQYALQV 874 (953)
Q Consensus 821 ~~~~~~e~~~~~kdG~~~~v~~s~~pi~d~~G~i~g~v~v~~DITerK~~e~el 874 (953)
+.....++.+.+++|..+|+.++..|+.|.+|.+.|++++++|||++|+++++.
T Consensus 68 ~~~~~~e~~~~~~~g~~~~~~~~~~~i~~~~g~~~~~~~~~~DITe~k~~e~~~ 121 (128)
T 3t50_A 68 EKPIDIDIINYKKSGEAFWNRLHISPVHNANGRLQHFVSSQLDVTLELVPRGSL 121 (128)
T ss_dssp TCCEEEEEEEECTTCCEEEEEEEEEEEECTTSCEEEEEEEEEECHHHHC-----
T ss_pred CCCceeEEEEEcCCCCEEEEEEEEEEEECCCCCEEEEEEEEEEcchhhhhhhhh
Confidence 666778889999999999999999999999999999999999999999887553
No 39
>3mxq_A Sensor protein; PSI2, MCSG, structural genomics, protein structure initiativ midwest center for structural genomics; 2.78A {Vibrio cholerae o1 biovar el tor}
Probab=99.44 E-value=4.7e-13 Score=130.92 Aligned_cols=127 Identities=12% Similarity=0.095 Sum_probs=99.5
Q ss_pred HHHHHHHHHHHHHHHhcCccEEEEcCCCcEEecCHHHHHHhCCCcchhcCCCccccccCCcHHHHHHHHHHHhcccceEE
Q 002210 604 DELRIITNEMVRLIETAAVPILAVDASGNVNGWNSKAAELTGLTVDQAIGTALVDLVAGDSVDVVKNMLSSAFLEERNVE 683 (953)
Q Consensus 604 ~eL~~~~~~l~~lle~~~~~I~~~D~dg~i~~~N~a~~~l~G~~~~eliG~~~~dl~~~~~~~~~~~~l~~~l~~~~~~e 683 (953)
.++++.+..+..+++++++||+++|.+|+|++||+++++++|++.++++|+++.++++. ..+.+...+..++..+....
T Consensus 15 ~~~~~~~~~l~~il~~~~~gi~v~D~~g~I~~~N~a~~~~~G~~~~eviG~~~~~~~p~-~~~~~~~~l~~vl~~G~~~~ 93 (152)
T 3mxq_A 15 NAMAKSRLLLSELLDQLSFALCIVRNDYVIVKVNEYFESRVIFDGETMQGKNILELFPE-SADYLKRKIDTALVIESSSF 93 (152)
T ss_dssp HHHHHHHHHHHHHHHHHCCEEEEEETTSBEEEECHHHHHTSSSCHHHHTTSBHHHHSGG-GHHHHHHHHHHHHHHTSCEE
T ss_pred HHHHHHHHHHHHHHhcCCCCEEEEcCCCEEEEECHHHHHHHCcCHHHHCCCCHHHhcCC-hHHHHHHHHHHHHhcCCcee
Confidence 45777778889999999999999999999999999999999999999999999999988 77778888888884443321
Q ss_pred EE---------EEEc-ccCCCCCEEEEEEEEEEeecCCCCEEEEEEEEEecchhHHHH
Q 002210 684 IK---------LRAF-GPRETSGPVILVVNACCTQDTKENVIGVCFVGQDITGQKLVM 731 (953)
Q Consensus 684 ~~---------~~~~-~~~~dG~~~~v~v~~~pi~d~~g~v~gvv~v~~DITerk~~E 731 (953)
.. +... ...++|...++.++..|++|.+|++.|++.+++|||+++++.
T Consensus 94 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ti~Pl~d~~G~v~gv~~ii~DVTe~~~a~ 151 (152)
T 3mxq_A 94 SSWEQKPHLLPFKSSRPVSGEEEQMYQNLEVIPIHSEDGTIEHVCLCVYDVTIQASQQ 151 (152)
T ss_dssp EECCSSSCSSCC----------CCEEEEEEEEEEECTTSCEEEEEEEEEEEECC----
T ss_pred eecccccccccccccCCCCCCCcEEEEEEEEEEEECCCCCEEEEEEEEEECCHHHhcc
Confidence 11 1111 012356778889999999999999999999999999998753
No 40
>3f1p_A Endothelial PAS domain-containing protein 1; PAS domain, heterodimer, internal cavity, activator, angiogenesis, congenital erythrocytosis; 1.17A {Homo sapiens} SCOP: d.110.3.7 PDB: 3f1o_A* 3f1n_A 3h7w_A* 3h82_A* 1p97_A 2a24_A 4h6j_A
Probab=99.43 E-value=3.5e-13 Score=124.55 Aligned_cols=109 Identities=9% Similarity=0.057 Sum_probs=95.4
Q ss_pred hcCccEEEEcCCCcEEecCHHHHHHhCCCcchhcCCCccccccCCcHHHHHHHHHHHhcccceEEEEEEEcccCCCCCEE
Q 002210 619 TAAVPILAVDASGNVNGWNSKAAELTGLTVDQAIGTALVDLVAGDSVDVVKNMLSSAFLEERNVEIKLRAFGPRETSGPV 698 (953)
Q Consensus 619 ~~~~~I~~~D~dg~i~~~N~a~~~l~G~~~~eliG~~~~dl~~~~~~~~~~~~l~~~l~~~~~~e~~~~~~~~~~dG~~~ 698 (953)
.+++.|+.+|.+|+++++|+++++++||++++++|+++.+++||++.+.+...+..++..+.....+++. .+++|..+
T Consensus 7 ~~~~~i~~~d~~g~i~~~n~~~~~~~Gy~~~el~g~~~~~~~~p~d~~~~~~~~~~~~~~~~~~~~e~r~--~~~dG~~~ 84 (117)
T 3f1p_A 7 DSKTFLSEHSMDMKFTYCDDRITELIGYHPEELLGRSAYEFYHALDSENMTKSHQNLCTKGQVVSGQYRM--LAKHGGYV 84 (117)
T ss_dssp GGGEEEEEECTTCBEEEECTHHHHHHCCCHHHHTTSBGGGGBCGGGHHHHHHHHHHHHHHSEEECCCEEE--ECTTSSEE
T ss_pred CCccEEEEECCCceEEEECcChhhhhCCCHHHHcCCchhheECHHHHHHHHHHHHHHHhCCCeeeeEEEE--EecCCCEE
Confidence 3567899999999999999999999999999999999999999999998888888887555555444444 56799999
Q ss_pred EEEEEEEEeecC-CCCEEEEEEEEEecchhHH
Q 002210 699 ILVVNACCTQDT-KENVIGVCFVGQDITGQKL 729 (953)
Q Consensus 699 ~v~v~~~pi~d~-~g~v~gvv~v~~DITerk~ 729 (953)
|+.++..|+++. +|.+.+++++.+|||++|+
T Consensus 85 w~~~~~~~~~d~~~g~~~~iv~~~~DITer~~ 116 (117)
T 3f1p_A 85 WLETQGTVIYNPRNLQPQCIMCVNYVLSEIEK 116 (117)
T ss_dssp EEEEEEEEEEETTTTEEEEEEEEEEECSCCBC
T ss_pred EEEEeeEEEECCCCCCceEEEEEeeecccccc
Confidence 999999999997 7889999999999999975
No 41
>4dj2_A Period circadian protein homolog 1; PAS domains, circadian clock protein, protein binding; 2.75A {Mus musculus}
Probab=99.43 E-value=1.6e-12 Score=142.56 Aligned_cols=223 Identities=13% Similarity=0.092 Sum_probs=147.4
Q ss_pred HHHhcCccEEEEcCC-CcEEecCHHHHHHhCCCcchhcCCCccccccCCcHHHHHHHHHHH-h----------------c
Q 002210 616 LIETAAVPILAVDAS-GNVNGWNSKAAELTGLTVDQAIGTALVDLVAGDSVDVVKNMLSSA-F----------------L 677 (953)
Q Consensus 616 lle~~~~~I~~~D~d-g~i~~~N~a~~~l~G~~~~eliG~~~~dl~~~~~~~~~~~~l~~~-l----------------~ 677 (953)
++++...-++++..+ |+|+|+++.+..++||+.++++|+++.+++|++|.+.+.+.+... + .
T Consensus 31 lLqaldGF~~vvs~~~G~i~yvS~sv~~~Lg~~~~~l~g~s~~d~iHp~D~~~f~~qL~~~~lp~~~~~~~~~~~~~~~~ 110 (320)
T 4dj2_A 31 TLRNQDTFSVAVSFLTGRIVYISEQAGVLLRCKRDVFRGARFSELLAPQDVGVFYGSTTPSRLPTWGTGTSAGSGLKDFT 110 (320)
T ss_dssp TTSCSSEEEEEEETTTCBEEEECTHHHHHHTSCSTTTTTSBGGGGBCHHHHHHHHHHCCTTTCCBTTC------------
T ss_pred HHhccCCEEEEEECCCceEEEECcHHHHHhCcCHHHHcCCcHHHhcCHHHHHHHHHhhcccCCCCcccCcccccccccCC
Confidence 477788888888885 999999999999999999999999999999999998777765321 0 0
Q ss_pred ccceEEEEEEEcccCCCCC--EEEEEEEE--EEeecCCCC--EEEEEEEEEecchh-HHHHHHHHHHHHHHHHHHhCCCC
Q 002210 678 EERNVEIKLRAFGPRETSG--PVILVVNA--CCTQDTKEN--VIGVCFVGQDITGQ-KLVMDKYTRIQGDYVGIVSSPSA 750 (953)
Q Consensus 678 ~~~~~e~~~~~~~~~~dG~--~~~v~v~~--~pi~d~~g~--v~gvv~v~~DITer-k~~E~~L~~se~~~~~i~e~~~~ 750 (953)
....+-..++.. ..++.. ..++.+.. ..+.+.+|. ....+..+.-+... +..+ +......
T Consensus 111 ~~rsF~CRmr~~-l~k~~~~~Y~~~~~~g~lk~~~~~~g~~~~~~~li~a~~~~s~~~~~~------------i~~~~~~ 177 (320)
T 4dj2_A 111 QEKSVFCRIRGG-PDRDPGPRYQPFRLTPYVTKIRVSDGAPAQPCCLLIAERIHSGYEAPR------------IPPDKRI 177 (320)
T ss_dssp -CCCEEEEECCC--------CCEEEEEEEEEEEECC---CCCEEEEEEEEEECCCSSSSSC------------CCGGGCE
T ss_pred CceeEEEEEEEe-ccCCCcccEEEEEEEEEecccccCCCCcccceeeeeeeeccCcccccc------------ccCCCce
Confidence 112222333322 112222 23333222 223344454 33333333333211 1000 0001111
Q ss_pred CCCCeEeecCCccEEehhHHHHHHhCCChhhhhcccccccccccccccccccCcchHHHHHHHHHHHhcC-CCcc-eEEE
Q 002210 751 LIPPIFMTDEDGRCLEWNDGMEKLSGLKREEAIERMLIGEVFTVKNFGCRVKNHDTLTKLRIVMNKVISG-QDAD-KILF 828 (953)
Q Consensus 751 li~~I~~~D~~G~i~~~N~a~~~l~G~~~eeliGk~~~~~~~~~~~~~~~l~~~~~~~~~~~~l~~~~~g-~~~~-~~e~ 828 (953)
.+...+.+|+++|+|+++..++||.++|++|+.+.+.++| ++...+...+...+.+ +... ..++
T Consensus 178 ---Fitrh~~dG~~~yvd~~~~~lLGY~peELig~s~~~~vHP-----------dD~~~~~~~~~~~l~~~g~~~~~~~y 243 (320)
T 4dj2_A 178 ---FTTRHTPSCLFQDVDERAAPLLGYLPQDLLGAPVLLFLHP-----------EDRPLMLAIHKKILQLAGQPFDHSPI 243 (320)
T ss_dssp ---EEEEECTTCBEEEECTTHHHHHSCCHHHHTTSBGGGGBCG-----------GGHHHHHHHHHHHTTSSSCCEECCCE
T ss_pred ---EEEEecCCceEEEcCcceeccCCcChHHHcCCcHHHhCCH-----------HHHHHHHHHHHHHHhcCCCcccceEE
Confidence 5778899999999999999999999999999998755444 4445566677777764 3333 4689
Q ss_pred EEEccCCCEEEEEEEEEEeecC-CCCEEEEEEEEEecc
Q 002210 829 GFFDQQGKYVEALLSANKRTNA-EGKISGILCFLHVAS 865 (953)
Q Consensus 829 ~~~~kdG~~~~v~~s~~pi~d~-~G~i~g~v~v~~DIT 865 (953)
|++++||.++|+..+..++.|. .+++..++|.-+-++
T Consensus 244 R~~~kdG~~vwvet~~~~~~np~s~~~e~II~~h~v~~ 281 (320)
T 4dj2_A 244 RFCARNGEYVTMDTSWAGFVHPWSRKVAFVLGRHKVRT 281 (320)
T ss_dssp EEECSSSCEEEEECEEEEEECTTTCSEEEEEEEEEESS
T ss_pred EEEccCCCEEEEEEEEEEEECCCCCCccEEEEEEEEcc
Confidence 9999999999999999998885 577888888877766
No 42
>3sw1_A Sensory box protein; light-oxygen-voltage, LOV, PAS, signaling protein; HET: FMN; 2.63A {Pseudomonas putida}
Probab=99.42 E-value=1.2e-12 Score=128.02 Aligned_cols=131 Identities=13% Similarity=0.093 Sum_probs=109.4
Q ss_pred HHHHHHHHHhcCccEEEEcCCC---cEEecCHHHHHHhCCCcchhcCCCccccccCCcHHHHHHHHHHHhcccceEEEEE
Q 002210 610 TNEMVRLIETAAVPILAVDASG---NVNGWNSKAAELTGLTVDQAIGTALVDLVAGDSVDVVKNMLSSAFLEERNVEIKL 686 (953)
Q Consensus 610 ~~~l~~lle~~~~~I~~~D~dg---~i~~~N~a~~~l~G~~~~eliG~~~~dl~~~~~~~~~~~~l~~~l~~~~~~e~~~ 686 (953)
++.++.++++++++|+++|.+| +|+++|+++++++|++.++++|+++.+++++.........+...+..+.....++
T Consensus 24 ~~~~~~i~~~~~~~i~~~d~~~~~~~i~~~N~~~~~~~g~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 103 (162)
T 3sw1_A 24 AQLLQSMVDASNDGIVVAEKEGDDTILIYVNAAFEYLTGYSRDEILYQDCRFLQGDDRDQLGRARIRKAMAEGRPCREVL 103 (162)
T ss_dssp HHHHHHHHHTCSSEEEEEEEETTEEEEEEECHHHHHHHTCCHHHHTTSBGGGGTTTCCCCHHHHHHHHHHHHTCCEEEEE
T ss_pred HHHHHHHHhhccCcEEEEeCCCCccEEEEECHHHHHHHCCCHHHHcCCCcceecCCCcCHHHHHHHHHHHhcCCCCcceE
Confidence 3567889999999999999999 9999999999999999999999999988877766666666666664555555544
Q ss_pred EEcccCCCCCEEEEEEEEEEeecCCCCEEEEEEEEEecchhHHHHHHHHHHHHHHH
Q 002210 687 RAFGPRETSGPVILVVNACCTQDTKENVIGVCFVGQDITGQKLVMDKYTRIQGDYV 742 (953)
Q Consensus 687 ~~~~~~~dG~~~~v~v~~~pi~d~~g~v~gvv~v~~DITerk~~E~~L~~se~~~~ 742 (953)
.. .+.+|..+|+.++..|+.+.+|.+.|++++++|||++|+++++++++++.+.
T Consensus 104 ~~--~~~~g~~~~~~~~~~~i~~~~g~~~~~~~~~~DiTe~k~~e~~l~~~~~~l~ 157 (162)
T 3sw1_A 104 RN--YRKDGSAFWNELSITPVKSDFDQRTYFIGIQKDVSRQVELERELAELRARPK 157 (162)
T ss_dssp EE--ECTTCCEEEEEEEEEEEECSSSSCEEEEEEEEECHHHHHHHHHHHHHTC---
T ss_pred EE--ECCCCCEEEEEEEEEEeecCCCCEEEEEEEEEeCcHHHHHHHHHHHHHHHHH
Confidence 43 3568999999999999999999999999999999999999999988776554
No 43
>1n9l_A PHOT-LOV1, putative blue light receptor; phototropin, flavin, electron transport; HET: FMN; 1.90A {Chlamydomonas reinhardtii} SCOP: d.110.3.6 PDB: 1n9n_A* 1n9o_A*
Probab=99.41 E-value=1.5e-12 Score=119.39 Aligned_cols=102 Identities=12% Similarity=0.130 Sum_probs=82.1
Q ss_pred CeEeecC---CccEEehhHHHHHHhCCChhhhhcccccccccccccccccccCcchHHHHHHHHHHHhcCCCcceEEEEE
Q 002210 754 PIFMTDE---DGRCLEWNDGMEKLSGLKREEAIERMLIGEVFTVKNFGCRVKNHDTLTKLRIVMNKVISGQDADKILFGF 830 (953)
Q Consensus 754 ~I~~~D~---~G~i~~~N~a~~~l~G~~~eeliGk~~~~~~~~~~~~~~~l~~~~~~~~~~~~l~~~~~g~~~~~~e~~~ 830 (953)
+|+++|. +|+|+++|+++++++||+.+|++|++.. .+.++.. ... ....+...+..+..+..++..
T Consensus 5 ~i~i~d~~~~~g~i~~~N~a~~~l~Gy~~~e~~G~~~~-~l~~~~~------~~~----~~~~~~~~~~~~~~~~~e~~~ 73 (109)
T 1n9l_A 5 TFVVADATLPDCPLVYASEGFYAMTGYGPDEVLGHNCR-FLQGEGT------DPK----EVQKIRDAIKKGEACSVRLLN 73 (109)
T ss_dssp EEEEEETTSTTCCEEEECHHHHHHHCCCHHHHTTSCGG-GGCCTTC------CHH----HHHHHHHHHHHTCCEEEEEEE
T ss_pred EEEEEcCCCCCCeEEEEchHHHHHHCcCHHHHcCCCch-hcCCCCC------CHH----HHHHHHHHHHcCCcEEEEEEE
Confidence 7999994 7999999999999999999999999854 2322211 111 223344555556667888899
Q ss_pred EccCCCEEEEEEEEEEeecCCCCEEEEEEEEEeccH
Q 002210 831 FDQQGKYVEALLSANKRTNAEGKISGILCFLHVASP 866 (953)
Q Consensus 831 ~~kdG~~~~v~~s~~pi~d~~G~i~g~v~v~~DITe 866 (953)
++|||+.+|+.++..|++|.+|++.+++++.+|||+
T Consensus 74 ~~kdG~~~~~~~~~~pi~d~~G~~~~~v~~~~DITe 109 (109)
T 1n9l_A 74 YRKDGTPFWNLLTVTPIKTPDGRVSKFVGVQVDVTS 109 (109)
T ss_dssp ECTTSCEEEEEEEEEEEECTTSCEEEEEEEEEECCC
T ss_pred EcCCCCEEEEEEEEEEEECCCCCEEEEEEEEEeCCC
Confidence 999999999999999999999999999999999995
No 44
>3sw1_A Sensory box protein; light-oxygen-voltage, LOV, PAS, signaling protein; HET: FMN; 2.63A {Pseudomonas putida}
Probab=99.40 E-value=1.7e-12 Score=126.87 Aligned_cols=128 Identities=12% Similarity=0.094 Sum_probs=103.6
Q ss_pred HHHHHHHHhCCCCCCCCeEeecCCc---cEEehhHHHHHHhCCChhhhhcccccccccccccccccccCcchHHHHHHHH
Q 002210 738 QGDYVGIVSSPSALIPPIFMTDEDG---RCLEWNDGMEKLSGLKREEAIERMLIGEVFTVKNFGCRVKNHDTLTKLRIVM 814 (953)
Q Consensus 738 e~~~~~i~e~~~~li~~I~~~D~~G---~i~~~N~a~~~l~G~~~eeliGk~~~~~~~~~~~~~~~l~~~~~~~~~~~~l 814 (953)
+..++.++++++. +|+++|.+| +|+++|+++++++|++.++++|+.+. .+++.... .. +...+
T Consensus 24 ~~~~~~i~~~~~~---~i~~~d~~~~~~~i~~~N~~~~~~~g~~~~~~~g~~~~-~~~~~~~~------~~----~~~~~ 89 (162)
T 3sw1_A 24 AQLLQSMVDASND---GIVVAEKEGDDTILIYVNAAFEYLTGYSRDEILYQDCR-FLQGDDRD------QL----GRARI 89 (162)
T ss_dssp HHHHHHHHHTCSS---EEEEEEEETTEEEEEEECHHHHHHHTCCHHHHTTSBGG-GGTTTCCC------CH----HHHHH
T ss_pred HHHHHHHHhhccC---cEEEEeCCCCccEEEEECHHHHHHHCCCHHHHcCCCcc-eecCCCcC------HH----HHHHH
Confidence 4568899999987 899999999 99999999999999999999999875 33332110 11 22334
Q ss_pred HHHhcCCCcceEEEEEEccCCCEEEEEEEEEEeecCCCCEEEEEEEEEeccHHHHHHHHHHHHHH
Q 002210 815 NKVISGQDADKILFGFFDQQGKYVEALLSANKRTNAEGKISGILCFLHVASPELQYALQVQRISE 879 (953)
Q Consensus 815 ~~~~~g~~~~~~e~~~~~kdG~~~~v~~s~~pi~d~~G~i~g~v~v~~DITerK~~e~elq~~ae 879 (953)
...+..+.....++.+.+++|+.+|+.++..|+.|.+|.+.|++++++|||++|+.+.++++..+
T Consensus 90 ~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~i~~~~g~~~~~~~~~~DiTe~k~~e~~l~~~~~ 154 (162)
T 3sw1_A 90 RKAMAEGRPCREVLRNYRKDGSAFWNELSITPVKSDFDQRTYFIGIQKDVSRQVELERELAELRA 154 (162)
T ss_dssp HHHHHHTCCEEEEEEEECTTCCEEEEEEEEEEEECSSSSCEEEEEEEEECHHHHHHHHHHHHHTC
T ss_pred HHHHhcCCCCcceEEEECCCCCEEEEEEEEEEeecCCCCEEEEEEEEEeCcHHHHHHHHHHHHHH
Confidence 44455555667888889999999999999999999999999999999999999999887776544
No 45
>3gdi_A Period circadian protein homolog 2; tandem PAS domains, biological rhythms, cytoplasm, nucleus, phosphoprotein, transcription; 2.40A {Mus musculus}
Probab=99.40 E-value=9.2e-12 Score=135.86 Aligned_cols=224 Identities=13% Similarity=0.093 Sum_probs=136.6
Q ss_pred HHHhcCccEEEEcCC-CcEEecCHHHHHHhCCCcchhcCCCccccccCCcHHHHHHHHHHH-h----------------c
Q 002210 616 LIETAAVPILAVDAS-GNVNGWNSKAAELTGLTVDQAIGTALVDLVAGDSVDVVKNMLSSA-F----------------L 677 (953)
Q Consensus 616 lle~~~~~I~~~D~d-g~i~~~N~a~~~l~G~~~~eliG~~~~dl~~~~~~~~~~~~l~~~-l----------------~ 677 (953)
+++++..-+++++.+ |+|+|+++.+..++||+.++++|+++.+++|++|.+.+...+... + .
T Consensus 20 ll~a~dgF~~vvs~~~G~i~yvS~s~~~~Lg~~~~el~g~s~~d~iHp~D~~~~~~~L~~~~lp~~~~~~~~~~~~~~~~ 99 (309)
T 3gdi_A 20 IVKNADMFAVAVSLVSGKILYISNQVASIFHCKKDAFSDAKFVEFLAPHDVSVFHSYTTPYKLPPWSVCSGLDSFTQECM 99 (309)
T ss_dssp ---CTTEEEEEECTTTCBEEEECTTTTTTC-------CCSBGGGGBCTTTHHHHHHHTCTTSSCBCC-------------
T ss_pred HHHhcCCEEEEEECCCceEEEECCHHHHHcCCCHHHHcCCchhhccCHhHHHHHHHhccccCCCCcccccCccccccccC
Confidence 678888888999986 999999999999999999999999999999999999887765321 0 0
Q ss_pred ccceEEEEEEEcccC-CCCCEEEEEEEEE--EeecCCCC--EEEEEEEEEecchh-HHHHHHHHHHHHHHHHHHhCCCCC
Q 002210 678 EERNVEIKLRAFGPR-ETSGPVILVVNAC--CTQDTKEN--VIGVCFVGQDITGQ-KLVMDKYTRIQGDYVGIVSSPSAL 751 (953)
Q Consensus 678 ~~~~~e~~~~~~~~~-~dG~~~~v~v~~~--pi~d~~g~--v~gvv~v~~DITer-k~~E~~L~~se~~~~~i~e~~~~l 751 (953)
....+...++..+.+ +..+..++.+... .+.+.+|. ...++.++.-+..- +... ...+. +.
T Consensus 100 ~~rsF~CRmr~~~~~~~~~~Y~~~~~~g~lk~~~~~~g~~~~~~lv~~a~~~~s~~~~p~-----------~~~~~-~~- 166 (309)
T 3gdi_A 100 EEKSFFCRVSVGKHHENEIRYQPFRMTPYLVKVQEQQGAESQLCCLLLAERVHSGYEAPR-----------IPPEK-RI- 166 (309)
T ss_dssp -CCCEEEEECCCC----CCCCEEEEEEEEEEECC--------EEEEEEEEECCCTTSSSC-----------CCGGG-CE-
T ss_pred CceeEEEEEEccccCCCccceEEEEEEeeeccccCCCCCcCccEEEEEEEecCCCccCCC-----------cCCCC-ce-
Confidence 122233333321100 1112223333222 12233443 23333333333210 0000 00011 11
Q ss_pred CCCeEeecCCccEEehhHHHHHHhCCChhhhhcccccccccccccccccccCcchHHHHHHHHHHHhcCC-Ccce-EEEE
Q 002210 752 IPPIFMTDEDGRCLEWNDGMEKLSGLKREEAIERMLIGEVFTVKNFGCRVKNHDTLTKLRIVMNKVISGQ-DADK-ILFG 829 (953)
Q Consensus 752 i~~I~~~D~~G~i~~~N~a~~~l~G~~~eeliGk~~~~~~~~~~~~~~~l~~~~~~~~~~~~l~~~~~g~-~~~~-~e~~ 829 (953)
.+...+.+|+++|+|+++..++||.++|++|+.+.+.++|+ +...+...+...+.++ .... .++|
T Consensus 167 --Fitrh~~dG~~~yvd~~~~~lLGY~peELig~s~~~~iHpd-----------D~~~~~~~~~~~l~~~g~~~~~~~yR 233 (309)
T 3gdi_A 167 --FTTTHTPNCLFQAVDERAVPLLGYLPQDLIETPVLVQLHPS-----------DRPLMLAIHKKILQAGGQPFDYSPIR 233 (309)
T ss_dssp --EEEEECTTCBEEEECTTHHHHHSCCHHHHTTSBHHHHBCTT-----------SHHHHHHHHHHHHHTTTCCEEEEEEE
T ss_pred --EEEEecCCCeEEEECcccccccCcCHHHHcCCCHHHhCCHH-----------HHHHHHHHHHHHHhcCCceeeceEEE
Confidence 57778999999999999999999999999999987555544 3444556666666643 3344 5899
Q ss_pred EEccCCCEEEEEEEEEEeecC-CCCEEEEEEEEEecc
Q 002210 830 FFDQQGKYVEALLSANKRTNA-EGKISGILCFLHVAS 865 (953)
Q Consensus 830 ~~~kdG~~~~v~~s~~pi~d~-~G~i~g~v~v~~DIT 865 (953)
++++||.++|++.+..++.|. .+++..++|.-+.++
T Consensus 234 ~~~kdG~~vwvet~~~~~~np~s~~~e~ii~~h~v~~ 270 (309)
T 3gdi_A 234 FRTRNGEYITLDTSWSSFINPWSRKISFIIGRHKVRV 270 (309)
T ss_dssp EECTTSCEEEEEEEEEEEECTTTCCEEEEEEEEEEEE
T ss_pred EEccCCCEEEEEEEEEEEECCCCCcccEEEEEEEEcc
Confidence 999999999999999998886 567777888777655
No 46
>3h9w_A Diguanylate cyclase with PAS/PAC sensor; alpha-beta protein., structural genomics, PSI-2, protein STR initiative; 1.90A {Marinobacter aquaeolei}
Probab=99.40 E-value=9.5e-13 Score=121.28 Aligned_cols=108 Identities=10% Similarity=-0.004 Sum_probs=91.1
Q ss_pred CeEeec-CCccEEehhHHHHHHhCCChhhhhcccccccccccccccccccCcchHHHHHHHHHHHhcCCCcceEEEEEEc
Q 002210 754 PIFMTD-EDGRCLEWNDGMEKLSGLKREEAIERMLIGEVFTVKNFGCRVKNHDTLTKLRIVMNKVISGQDADKILFGFFD 832 (953)
Q Consensus 754 ~I~~~D-~~G~i~~~N~a~~~l~G~~~eeliGk~~~~~~~~~~~~~~~l~~~~~~~~~~~~l~~~~~g~~~~~~e~~~~~ 832 (953)
++|.+| .+|+++|+|+++++++||+++++.|...+. ...++++...+...+...+.++.....++++++
T Consensus 5 giw~~d~~~~~~~~~n~~~~~l~G~~~~e~~~~~~~~----------~~ihpdd~~~~~~~~~~~~~~~~~~~~e~r~~~ 74 (115)
T 3h9w_A 5 IPWKINWQTMAFEYIGPQIEALLGWPQGSWKSVEDWA----------TRMHPEDQEWVVNFCVKQSECGVDHEADYRALH 74 (115)
T ss_dssp EEEEEETTTTEEEEECTHHHHHHCSCGGGCCBHHHHH----------HSBCHHHHHHHHHHHHHHHHTTCCEEEEEEEEC
T ss_pred EEEEEEcCCCcEEEEChhHHHHhCCChHHccCHHHHH----------HhcCHHHHHHHHHHHHHHHhcCCcccEEEEEEc
Confidence 799999 678999999999999999999998842221 223355566677778888888777889999999
Q ss_pred cCCCEEEEEEEEEEeecCCCCEEEEEEEEEeccHHHHHH
Q 002210 833 QQGKYVEALLSANKRTNAEGKISGILCFLHVASPELQYA 871 (953)
Q Consensus 833 kdG~~~~v~~s~~pi~d~~G~i~g~v~v~~DITerK~~e 871 (953)
+||+++|+..++.|++|.+|++.+++|+..|||++|++|
T Consensus 75 ~dG~~~w~~~~~~~~~d~~G~~~~~~G~~~Dit~~k~~~ 113 (115)
T 3h9w_A 75 RDGHYVWIRDVVHVVRDDSGEVEALIGFMFDISLEHHHH 113 (115)
T ss_dssp TTSCEEEEEEEEEEEECTTSCEEEEEEEEEECGGGGC--
T ss_pred CCCCEEEEEEEEEEEECCCCCEEEEEEEEeccCcccccc
Confidence 999999999999999999999999999999999999776
No 47
>2vv6_A FIXL, sensor protein FIXL; signaling protein, transferase, phosphoprotein, nitrogen FIX PER-ARNT-SIM, metal-binding, PAS, iron, heme; HET: HEM; 1.5A {Bradyrhizobium japonicum} PDB: 1xj6_A* 1xj4_A* 2vv7_A* 2vv8_A* 1lsw_A* 1dp8_A* 1dp9_A* 1drm_A* 1lsv_A* 1dp6_A* 1lsx_A* 1lt0_A* 1y28_A* 2cmn_A* 1xj3_A* 1xj2_A* 2owh_A* 2owj_A*
Probab=99.39 E-value=2.8e-12 Score=118.99 Aligned_cols=110 Identities=13% Similarity=0.085 Sum_probs=72.2
Q ss_pred CeEeecCCccEEehhHHHHHHhCCChhhhhcccccccccccccccccccCcchHHHHHHHHHHHhc-CCC---cceEEEE
Q 002210 754 PIFMTDEDGRCLEWNDGMEKLSGLKREEAIERMLIGEVFTVKNFGCRVKNHDTLTKLRIVMNKVIS-GQD---ADKILFG 829 (953)
Q Consensus 754 ~I~~~D~~G~i~~~N~a~~~l~G~~~eeliGk~~~~~~~~~~~~~~~l~~~~~~~~~~~~l~~~~~-g~~---~~~~e~~ 829 (953)
+|+++|.+|+|++||+++++++||++++++|+++.. +++++ ........+..... +.. ....++.
T Consensus 5 ~i~~~d~~g~i~~~N~a~~~l~G~~~~el~G~~~~~-l~~~~----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 73 (119)
T 2vv6_A 5 AMIVIDGHGIIQLFSTAAERLFGWSELEAIGQNVNI-LMPEP----------DRSRHDSYISRYRTTSDPHIIGIGRIVT 73 (119)
T ss_dssp EEEEEETTSBEEEECHHHHHHHCCCHHHHTTSBGGG-GSCTT----------HHHHHHHHHHHHHHHCCCSSTTTCEEEE
T ss_pred eEEEECCCCeEEEEhHHHHHHhCCCHHHHcCCCHHH-hCCch----------HHHHHHHHHHHHhcCCCcccCCCceEEE
Confidence 899999999999999999999999999999998753 33321 11111122222222 211 1345777
Q ss_pred EEccCCCEEEEEEEEEEeecCCCCEEEEEEEEEeccHHHHHHHHHHH
Q 002210 830 FFDQQGKYVEALLSANKRTNAEGKISGILCFLHVASPELQYALQVQR 876 (953)
Q Consensus 830 ~~~kdG~~~~v~~s~~pi~d~~G~i~g~v~v~~DITerK~~e~elq~ 876 (953)
.+++||+.+|+.++..|+.+.+ ..+++++++|||++|++|.++++
T Consensus 74 ~~~~dG~~~~~~~~~~~~~~~~--~~~~~~~~~DITerk~~e~~l~~ 118 (119)
T 2vv6_A 74 GKRRDGTTFPMHLSIGEMQSGG--EPYFTGFVRDLTEHQQTQARLQE 118 (119)
T ss_dssp EECTTSCEEEEEEEEEEEEETT--EEEEEEEEEECC-----------
T ss_pred EEeCCCCEEEEEEEEEEEEECC--eEEEEEEEEEcHHHHHHHHHHHh
Confidence 8999999999999999997643 34689999999999988876543
No 48
>3lyx_A Sensory BOX/ggdef domain protein; structural genomics, PSI- 2, protein structure initiative, northeast structural genomics consortium; 2.00A {Colwellia psychrerythraea}
Probab=99.39 E-value=3.3e-12 Score=116.67 Aligned_cols=119 Identities=15% Similarity=0.124 Sum_probs=97.9
Q ss_pred HHHHHHHHHhCCCCCCCCeEeecCCccEEehhHHHHHHhCCChhhhhcccccccccccccccccccCcchHHHHHHHHHH
Q 002210 737 IQGDYVGIVSSPSALIPPIFMTDEDGRCLEWNDGMEKLSGLKREEAIERMLIGEVFTVKNFGCRVKNHDTLTKLRIVMNK 816 (953)
Q Consensus 737 se~~~~~i~e~~~~li~~I~~~D~~G~i~~~N~a~~~l~G~~~eeliGk~~~~~~~~~~~~~~~l~~~~~~~~~~~~l~~ 816 (953)
++..++.++++++. +++++|.+|+++++|+++++++|++.++++|+.+. .+++. +....+...+..
T Consensus 5 ~~~~~~~~~~~~~~---~i~~~d~~~~i~~~N~~~~~~~g~~~~~~~g~~~~-~~~~~----------~~~~~~~~~~~~ 70 (124)
T 3lyx_A 5 ILKQRAKAFDYVFD---AIVVTDLQGFIIDWNKGSETLYGYSKEQAIGQPVN-MLHVP----------GDTEHITSEVIS 70 (124)
T ss_dssp HHHHHHHGGGTCSS---EEEEEETTCBEEEECHHHHHHHCCCHHHHTTSBGG-GGSCT----------TTHHHHHHHHHH
T ss_pred HHHHHHHHHhhcCc---eEEEECCCCcEeehhhHHHHHhCCCHHHHcCCCHH-HhcCc----------chhhHHHHHHHH
Confidence 45678999999987 89999999999999999999999999999999876 33332 222223444555
Q ss_pred HhcCCCcceEEEEEEccCCCEEEEEEEEEEeecCCCCEEEEEEEEEeccHHHH
Q 002210 817 VISGQDADKILFGFFDQQGKYVEALLSANKRTNAEGKISGILCFLHVASPELQ 869 (953)
Q Consensus 817 ~~~g~~~~~~e~~~~~kdG~~~~v~~s~~pi~d~~G~i~g~v~v~~DITerK~ 869 (953)
.+.++.....++.+.+++|..+|+.++..|+.|.+|.+.|++++++|||++|+
T Consensus 71 ~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~g~~~~~~~~~~Dit~~~~ 123 (124)
T 3lyx_A 71 AVENQGKWTGEIRMLHKDGHIGWIESMCVPIYGENYQMVGALGINRDITKRKK 123 (124)
T ss_dssp HHHHTSCEEEEEEEECTTSCEEEEEEEEEEEECSTTCEEEEEEEEEECSCC--
T ss_pred HHHcCCcccceEEEEccCCCEEEEEEEEEEEECCCCCEEEEEEEEecchhhhc
Confidence 55666667888899999999999999999999999999999999999999874
No 49
>2r78_A Sensor protein; sensory box sensor histidine kinase/response regulator, structural genomics, PSI, MCSG; 1.60A {Geobacter sulfurreducens pca}
Probab=99.37 E-value=4.9e-12 Score=117.39 Aligned_cols=113 Identities=19% Similarity=0.196 Sum_probs=84.6
Q ss_pred HHHHHHHHHHHHHhCCCCCCCCeEeecCCccEEehhHHHHHHhCCChhhhhcccccccccccccccccccCcchHHHHHH
Q 002210 733 KYTRIQGDYVGIVSSPSALIPPIFMTDEDGRCLEWNDGMEKLSGLKREEAIERMLIGEVFTVKNFGCRVKNHDTLTKLRI 812 (953)
Q Consensus 733 ~L~~se~~~~~i~e~~~~li~~I~~~D~~G~i~~~N~a~~~l~G~~~eeliGk~~~~~~~~~~~~~~~l~~~~~~~~~~~ 812 (953)
+|++++++|+.+++++++ +|+++|.+|+++++|+++++++||+++|++|+++. .+.+.. .... ...
T Consensus 5 ~l~~se~~~~~l~e~~~d---~i~~~d~~g~i~~vN~a~~~l~Gy~~~el~g~~~~-~~~~~~-------~~~~---~~~ 70 (117)
T 2r78_A 5 NLYFQSNAYRALFEHAID---GIFIMDAEGHYLDVNPAICSAIGYTRDEFLALDWG-VLSRGV-------DSGW---AAA 70 (117)
T ss_dssp SHHHHHHHHHHHHHHCSS---EEEEECTTSBEEEECHHHHHHHCCCHHHHTTCBTT-TTTTCS-------TTSH---HHH
T ss_pred HHHHhHHHHHHHHhcCCc---eEEEECCCCCEEEecHHHHHHHCcCHHHHcCCCHH-HhCCcc-------chhH---HHH
Confidence 367788899999999988 99999999999999999999999999999999854 222211 0111 111
Q ss_pred HHHHHhcCCCcceEEEEEEccCCCEEEEEEEEEEeecCCCCEEEEEEEEEecc
Q 002210 813 VMNKVISGQDADKILFGFFDQQGKYVEALLSANKRTNAEGKISGILCFLHVAS 865 (953)
Q Consensus 813 ~l~~~~~g~~~~~~e~~~~~kdG~~~~v~~s~~pi~d~~G~i~g~v~v~~DIT 865 (953)
.+.. +..+.....+++++++||+.+|+.++..|+. +|+ ++++++|||
T Consensus 71 ~~~~-~~~~~~~~~e~~~~~kdG~~~~v~~~~~~~~--~g~---~~~i~~DIT 117 (117)
T 2r78_A 71 SLAR-IVGGEPLREERTVWTRNGDQLTVELSAHLLP--DGK---ILGIARDVS 117 (117)
T ss_dssp HHHH-HHTTCCEEEEEEEECTTSCEEEEEEEEEECT--TSC---EEEEEEC--
T ss_pred HHHH-HHcCCcEEEEEEEEecCCCEEEEEEEEEEec--CCe---EEEEEEeCC
Confidence 2222 2334446778889999999999999999985 565 567889998
No 50
>2vv6_A FIXL, sensor protein FIXL; signaling protein, transferase, phosphoprotein, nitrogen FIX PER-ARNT-SIM, metal-binding, PAS, iron, heme; HET: HEM; 1.5A {Bradyrhizobium japonicum} PDB: 1xj6_A* 1xj4_A* 2vv7_A* 2vv8_A* 1lsw_A* 1dp8_A* 1dp9_A* 1drm_A* 1lsv_A* 1dp6_A* 1lsx_A* 1lt0_A* 1y28_A* 2cmn_A* 1xj3_A* 1xj2_A* 2owh_A* 2owj_A*
Probab=99.37 E-value=1.7e-12 Score=120.53 Aligned_cols=112 Identities=14% Similarity=0.113 Sum_probs=77.8
Q ss_pred hcCccEEEEcCCCcEEecCHHHHHHhCCCcchhcCCCccccccCCcHHHHHHHHHHHhccc------ceEEEEEEEcccC
Q 002210 619 TAAVPILAVDASGNVNGWNSKAAELTGLTVDQAIGTALVDLVAGDSVDVVKNMLSSAFLEE------RNVEIKLRAFGPR 692 (953)
Q Consensus 619 ~~~~~I~~~D~dg~i~~~N~a~~~l~G~~~~eliG~~~~dl~~~~~~~~~~~~l~~~l~~~------~~~e~~~~~~~~~ 692 (953)
+++++|+++|.+|+|++||++++++|||+.++++|+++..++++.........+......+ ...++. ..+
T Consensus 1 ~~~d~i~~~d~~g~i~~~N~a~~~l~G~~~~el~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~ 76 (119)
T 2vv6_A 1 TIPDAMIVIDGHGIIQLFSTAAERLFGWSELEAIGQNVNILMPEPDRSRHDSYISRYRTTSDPHIIGIGRIVT----GKR 76 (119)
T ss_dssp -CCCEEEEEETTSBEEEECHHHHHHHCCCHHHHTTSBGGGGSCTTHHHHHHHHHHHHHHHCCCSSTTTCEEEE----EEC
T ss_pred CCcceEEEECCCCeEEEEhHHHHHHhCCCHHHHcCCCHHHhCCchHHHHHHHHHHHHhcCCCcccCCCceEEE----EEe
Confidence 3689999999999999999999999999999999999998887766655444444443211 122222 256
Q ss_pred CCCCEEEEEEEEEEeecCCCCEEEEEEEEEecchhHHHHHHHHH
Q 002210 693 ETSGPVILVVNACCTQDTKENVIGVCFVGQDITGQKLVMDKYTR 736 (953)
Q Consensus 693 ~dG~~~~v~v~~~pi~d~~g~v~gvv~v~~DITerk~~E~~L~~ 736 (953)
+||..+|+.++..|+.+. ...+++++++|||++|++|++|++
T Consensus 77 ~dG~~~~~~~~~~~~~~~--~~~~~~~~~~DITerk~~e~~l~~ 118 (119)
T 2vv6_A 77 RDGTTFPMHLSIGEMQSG--GEPYFTGFVRDLTEHQQTQARLQE 118 (119)
T ss_dssp TTSCEEEEEEEEEEEEET--TEEEEEEEEEECC-----------
T ss_pred CCCCEEEEEEEEEEEEEC--CeEEEEEEEEEcHHHHHHHHHHHh
Confidence 799999999999999863 335688899999999999988764
No 51
>3lyx_A Sensory BOX/ggdef domain protein; structural genomics, PSI- 2, protein structure initiative, northeast structural genomics consortium; 2.00A {Colwellia psychrerythraea}
Probab=99.37 E-value=6.1e-12 Score=114.84 Aligned_cols=119 Identities=18% Similarity=0.201 Sum_probs=99.0
Q ss_pred HHHHHHHHHHhcCccEEEEcCCCcEEecCHHHHHHhCCCcchhcCCCccccccCCcHHHHHHHHHHHhcccceEEEEEEE
Q 002210 609 ITNEMVRLIETAAVPILAVDASGNVNGWNSKAAELTGLTVDQAIGTALVDLVAGDSVDVVKNMLSSAFLEERNVEIKLRA 688 (953)
Q Consensus 609 ~~~~l~~lle~~~~~I~~~D~dg~i~~~N~a~~~l~G~~~~eliG~~~~dl~~~~~~~~~~~~l~~~l~~~~~~e~~~~~ 688 (953)
..+.++.++++++++++++|.+|+++++|+++++++|++.++++|+++..+.++.........+...+..+.....+...
T Consensus 5 ~~~~~~~~~~~~~~~i~~~d~~~~i~~~N~~~~~~~g~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 84 (124)
T 3lyx_A 5 ILKQRAKAFDYVFDAIVVTDLQGFIIDWNKGSETLYGYSKEQAIGQPVNMLHVPGDTEHITSEVISAVENQGKWTGEIRM 84 (124)
T ss_dssp HHHHHHHGGGTCSSEEEEEETTCBEEEECHHHHHHHCCCHHHHTTSBGGGGSCTTTHHHHHHHHHHHHHHTSCEEEEEEE
T ss_pred HHHHHHHHHhhcCceEEEECCCCcEeehhhHHHHHhCCCHHHHcCCCHHHhcCcchhhHHHHHHHHHHHcCCcccceEEE
Confidence 44678889999999999999999999999999999999999999999997777776666666666666545455444443
Q ss_pred cccCCCCCEEEEEEEEEEeecCCCCEEEEEEEEEecchhHH
Q 002210 689 FGPRETSGPVILVVNACCTQDTKENVIGVCFVGQDITGQKL 729 (953)
Q Consensus 689 ~~~~~dG~~~~v~v~~~pi~d~~g~v~gvv~v~~DITerk~ 729 (953)
...+|..+|+.++..|+.+.+|.+.|++++++|||++|+
T Consensus 85 --~~~~g~~~~~~~~~~~~~~~~g~~~~~~~~~~Dit~~~~ 123 (124)
T 3lyx_A 85 --LHKDGHIGWIESMCVPIYGENYQMVGALGINRDITKRKK 123 (124)
T ss_dssp --ECTTSCEEEEEEEEEEEECSTTCEEEEEEEEEECSCC--
T ss_pred --EccCCCEEEEEEEEEEEECCCCCEEEEEEEEecchhhhc
Confidence 445799999999999999999999999999999999986
No 52
>3ewk_A Sensor protein; PAS domain, alpha/beta fold, kinase, phosphoprotein, transfe flavoprotein; HET: FAD; 2.34A {Methylococcus capsulatus}
Probab=99.37 E-value=5.1e-12 Score=132.21 Aligned_cols=113 Identities=19% Similarity=0.068 Sum_probs=92.2
Q ss_pred eEeecCCccEEehhHHHHHHhCCChhhhhcccccccccccccccccccCcchHHHHHHHHHHHhcCCCcceEEEEEEccC
Q 002210 755 IFMTDEDGRCLEWNDGMEKLSGLKREEAIERMLIGEVFTVKNFGCRVKNHDTLTKLRIVMNKVISGQDADKILFGFFDQQ 834 (953)
Q Consensus 755 I~~~D~~G~i~~~N~a~~~l~G~~~eeliGk~~~~~~~~~~~~~~~l~~~~~~~~~~~~l~~~~~g~~~~~~e~~~~~kd 834 (953)
|+++|.+|+|+++|+++++++||+++|++|+++. .+.+.. . .. .+...+...+..+..+..++.++++|
T Consensus 2 i~i~D~~g~i~~~N~a~~~l~Gy~~~el~G~~~~-~~~~~~------~-~~---~~~~~~~~~~~~~~~~~~e~~~~~~d 70 (227)
T 3ewk_A 2 VSITDLQGRILYANDNFCAVSRYGREELVGQDHR-IVNSGY------H-GK---AYIRDMWRTISRGNIWQGEFCNRRKD 70 (227)
T ss_dssp EEEEETTCBEEEECHHHHHHTTCCHHHHTTSBGG-GGCCSC------S-CH---HHHHHHHHHHTTTCCEEEEEEEECSS
T ss_pred EEEECCCCcEEehHHHHHHHHCcCHHHHcCCCHH-HcCCCC------C-CH---HHHHHHHHHHHcCCeEEEEEEEEcCC
Confidence 7889999999999999999999999999999864 222221 1 11 12333445566667788899999999
Q ss_pred CCEEEEEEEEEEeecCCCCEEEEEEEEEeccHHHHHHHHHHHHH
Q 002210 835 GKYVEALLSANKRTNAEGKISGILCFLHVASPELQYALQVQRIS 878 (953)
Q Consensus 835 G~~~~v~~s~~pi~d~~G~i~g~v~v~~DITerK~~e~elq~~a 878 (953)
|+.+|+..+..|++|.+|++.+++++.+|||++|+++.++++.+
T Consensus 71 G~~~~~~~~~~p~~d~~g~~~~~~~~~~DIT~~k~~e~~l~~~~ 114 (227)
T 3ewk_A 71 GTRYWVDSTIVPLMDNAGKPRQYISIRRDITAQKEAEAQLARLK 114 (227)
T ss_dssp SCEEEEEEEEEEEECSSSCEEEEEEEEEECTTTTHHHHHHHHHH
T ss_pred CCEEeeeeEEEEEEcCCCCEEEEEEEEEehhhHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999887775543
No 53
>3mqq_A Transcriptional regulator, LUXR family; PAS domain, PSI, MCSG, structural genomics, center for structural genomics; 1.65A {Burkholderia thailandensis} PDB: 3mqo_A
Probab=99.37 E-value=1.2e-12 Score=121.59 Aligned_cols=116 Identities=10% Similarity=0.080 Sum_probs=87.0
Q ss_pred HHHHHHhCCCCCCCCeEeecCCccEEehhHHHHHHhCCChhhhhcccccccccccccccccccCcchHHHHHHHHHHHhc
Q 002210 740 DYVGIVSSPSALIPPIFMTDEDGRCLEWNDGMEKLSGLKREEAIERMLIGEVFTVKNFGCRVKNHDTLTKLRIVMNKVIS 819 (953)
Q Consensus 740 ~~~~i~e~~~~li~~I~~~D~~G~i~~~N~a~~~l~G~~~eeliGk~~~~~~~~~~~~~~~l~~~~~~~~~~~~l~~~~~ 819 (953)
.|+.++++++. +|+ +|.+|+|+++|+++++++||++++++|+++. .+++++ +....+...+...+.
T Consensus 4 ~~~~~~~~~~~---~i~-~~~~g~i~~~N~a~~~l~G~~~~el~g~~~~-~~~~~~---------~~~~~~~~~~~~~~~ 69 (120)
T 3mqq_A 4 DYKTAFHLAPI---GLV-LSRDRVIEDCNDELAAIFRCARADLIGRSFE-VLYPSS---------DEFERIGERISPVMI 69 (120)
T ss_dssp CHHHHHHHCSS---EEE-EEETTEEEEECHHHHHHTTSCHHHHTTCBGG-GGSSSH---------HHHHHHHHHHHHHHH
T ss_pred hHHHHHhcCCc---eEE-EecCCEEHHHHHHHHHHhCcCHHHhCCCchh-hccCCh---------hhHHHHHHHHHHHHh
Confidence 47889999887 775 5789999999999999999999999999874 344331 121223333444444
Q ss_pred CCCcceEEEEEEccCCCEEEEEEEEEEeecCCCCEEEEEEEEEeccHHHHH
Q 002210 820 GQDADKILFGFFDQQGKYVEALLSANKRTNAEGKISGILCFLHVASPELQY 870 (953)
Q Consensus 820 g~~~~~~e~~~~~kdG~~~~v~~s~~pi~d~~G~i~g~v~v~~DITerK~~ 870 (953)
++..+..+++++++||+.+|+.++..|+ +.+|...+++++++|||++|+.
T Consensus 70 ~~~~~~~e~~~~~~dG~~~~~~~~~~~~-~~~~~~~~~v~~~~DITerk~~ 119 (120)
T 3mqq_A 70 AHGSYADDRIMKRAGGELFWCHVTGRAL-DRTAPLAAGVWTFEDLSATRRV 119 (120)
T ss_dssp HHSCEEEEEEEECTTSCEEEEEEEEEES-STTSTTSSEEEEEEESCC----
T ss_pred cCCcceEEEEEEeCCCCEEEEEEEEEEC-CCCCCceeEEEEEEcccHhhcc
Confidence 4456678889999999999999999998 5666677889999999999864
No 54
>3eeh_A Putative light and redox sensing histidine kinase; structural genomic MCSG, protein structure initiative, midwest center for STRU genomics; HET: PG5; 1.95A {Haloarcula marismortui}
Probab=99.36 E-value=4.4e-12 Score=116.36 Aligned_cols=121 Identities=9% Similarity=0.090 Sum_probs=94.4
Q ss_pred HHHHHHHHHHHHHHHHhCCCCCCCCeEeecCC-ccEEehhHHHHHHhCCChhhhhccc--ccccccccccccccccCcch
Q 002210 730 VMDKYTRIQGDYVGIVSSPSALIPPIFMTDED-GRCLEWNDGMEKLSGLKREEAIERM--LIGEVFTVKNFGCRVKNHDT 806 (953)
Q Consensus 730 ~E~~L~~se~~~~~i~e~~~~li~~I~~~D~~-G~i~~~N~a~~~l~G~~~eeliGk~--~~~~~~~~~~~~~~l~~~~~ 806 (953)
+++++++++.+|+.++++++. ++|.+|.+ |+++++|+++++++|++.++++|+. +.. ..+++.
T Consensus 2 ~e~~l~~~~~~~~~~~~~~~~---~i~~~d~~~~~i~~~n~~~~~~~g~~~~~~~~~~~~~~~-----------~~~~~~ 67 (125)
T 3eeh_A 2 AKQQAAKSERRVRELTEATND---ILWEFTADLSEVLVINSAYEDIWGRSVAKLRENPHDFLN-----------GIHPED 67 (125)
T ss_dssp --------CHHHHHHHSCCCC---EEEEEETTSSCEEEECTHHHHHHSSCHHHHHHCGGGGGG-----------GBCHHH
T ss_pred hHHHHHHHHHHHHHHHhcCCc---eEEEEEcCCCcEEEecHHHHHHHCCCHHHHccCcHHHHH-----------hcCHHH
Confidence 567788889999999999987 89999999 9999999999999999999999876 221 222344
Q ss_pred HHHHHHHHHHHhcCCCcceEEEEEEccCCCEEEEEEEEEEeecCCCCEEEEEEEEEecc
Q 002210 807 LTKLRIVMNKVISGQDADKILFGFFDQQGKYVEALLSANKRTNAEGKISGILCFLHVAS 865 (953)
Q Consensus 807 ~~~~~~~l~~~~~g~~~~~~e~~~~~kdG~~~~v~~s~~pi~d~~G~i~g~v~v~~DIT 865 (953)
...+...+..... +.....++++.+++|+.+|+.++..|+.+.+|.+.+++++++|||
T Consensus 68 ~~~~~~~~~~~~~-~~~~~~e~~~~~~~g~~~~~~~~~~~~~~~~g~~~~~~~~~~DIT 125 (125)
T 3eeh_A 68 RELMKDTMQSLMD-GESADVECRVNATEEYQRWVWIQGEPITNDAGETVRVAGFARDIT 125 (125)
T ss_dssp HHHHHHHHHHHHT-TCCEEEEEEECGGGTTCEEEEEEEEEEECTTSCEEEEEEEEEECC
T ss_pred HHHHHHHHHHHHc-CCCccEEEEEEcCCCCEEEEEEecEEEECCCCCEEEEEEEEEecC
Confidence 4445555555333 445578888999999999999999999999999999999999998
No 55
>4eet_B Phototropin-2; LOV, blue light photoreceptor, signaling protein, flavoprote; HET: FMN; 1.20A {Arabidopsis thaliana} PDB: 4ees_A* 4eer_A* 4eep_A* 4eeu_A* 1jnu_A* 1g28_A*
Probab=99.36 E-value=6.1e-12 Score=114.22 Aligned_cols=111 Identities=13% Similarity=0.052 Sum_probs=92.9
Q ss_pred HHHhcCccEEEEcC---CCcEEecCHHHHHHhCCCcchhcCCCccccccCCcHHHHHHHHHHHhcccceEEEEEEEcccC
Q 002210 616 LIETAAVPILAVDA---SGNVNGWNSKAAELTGLTVDQAIGTALVDLVAGDSVDVVKNMLSSAFLEERNVEIKLRAFGPR 692 (953)
Q Consensus 616 lle~~~~~I~~~D~---dg~i~~~N~a~~~l~G~~~~eliG~~~~dl~~~~~~~~~~~~l~~~l~~~~~~e~~~~~~~~~ 692 (953)
.+++++++++++|. +|+|+++|+++++++|++.++++|+++..+.++.........+...+..+.....++.. .+
T Consensus 2 ~l~~~~~~i~~~d~~~~~g~i~~~N~~~~~~~g~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~ 79 (115)
T 4eet_B 2 SPEFIEKNFVITDPRLPDNPIIFASDGFLELTEYSREEILGRNARFLQGPETDQATVQKIRDAIRDQRETTVQLIN--YT 79 (115)
T ss_dssp ---CCCCSEEEECTTSTTCCEEEECHHHHHHHCCCHHHHTTSCGGGGCCTTSCHHHHHHHHHHHHTTCCEEEEEEE--EC
T ss_pred ccccCCCcEEEEcCCCCCCcEEEEcHHHHHHHCcCHHHHhCCCHHHhcCCCCChHHHHHHHHHHHcCCCcceEEEE--ec
Confidence 57889999999999 99999999999999999999999999988888777666666666666555555555444 45
Q ss_pred CCCCEEEEEEEEEEeecCCCCEEEEEEEEEecchhH
Q 002210 693 ETSGPVILVVNACCTQDTKENVIGVCFVGQDITGQK 728 (953)
Q Consensus 693 ~dG~~~~v~v~~~pi~d~~g~v~gvv~v~~DITerk 728 (953)
++|..+|+.++..|+.+.+|.+.+++++++|||+++
T Consensus 80 ~~g~~~~~~~~~~~~~~~~g~~~~~~~~~~DITer~ 115 (115)
T 4eet_B 80 KSGKKFWNLLHLQPVRDQKGELQYFIGVQLDGSDHV 115 (115)
T ss_dssp TTCCEEEEEEEEEEEECTTSCEEEEEEEEEECSCCC
T ss_pred CCCCEEEEEEEEEEEECCCCCEEEEEEEEEeecccC
Confidence 689999999999999999999999999999999974
No 56
>2z6d_A Phototropin-2; PAS-fold, LOV-fold, alternative splicing, ATP-binding, chromophore, flavoprotein, FMN, kinase, membrane, nucleotide-binding; HET: FMN; 2.00A {Arabidopsis thaliana} PDB: 2z6c_A*
Probab=99.36 E-value=7.3e-12 Score=115.14 Aligned_cols=124 Identities=11% Similarity=0.081 Sum_probs=97.4
Q ss_pred HHHHHHHHHHHhcCccEEEEc---CCCcEEecCHHHHHHhCCCcchhcCCCccccccCCcHHHHHHHHHHHhcccceEEE
Q 002210 608 IITNEMVRLIETAAVPILAVD---ASGNVNGWNSKAAELTGLTVDQAIGTALVDLVAGDSVDVVKNMLSSAFLEERNVEI 684 (953)
Q Consensus 608 ~~~~~l~~lle~~~~~I~~~D---~dg~i~~~N~a~~~l~G~~~~eliG~~~~dl~~~~~~~~~~~~l~~~l~~~~~~e~ 684 (953)
+.+..++.++++++++++++| .+|+++++|+++++++|++.++++|+++.+++++.........+...+..+.....
T Consensus 3 ~~~~~~~~~~~~~~~~i~~~d~~d~~~~i~~~N~~~~~~~g~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 82 (130)
T 2z6d_A 3 RVSQELKTALSTLQQTFVVSDATQPHCPIVYASSGFFTMTGYSSKEIVGRNCRFLQGPDTDKNEVAKIRDCVKNGKSYCG 82 (130)
T ss_dssp ----CHHHHHHHTTCEEEEEETTSTTCCEEEECHHHHHHHCCCHHHHTTSCGGGGCCTTSCHHHHHHHHHHHHTTCCEEE
T ss_pred hHHHHHHHHHHhcccceeeeeccCCCCcEEEecHHHHHHhCcCHHHHcCCChhhccCCCCCchHHHHHHHHHHcCCccee
Confidence 345567889999999999999 99999999999999999999999999999888877666555555555544444444
Q ss_pred EEEEcccCCCCCEEEEEEEEEEeecCCCCEEEEEEEEEecchhHHHHHH
Q 002210 685 KLRAFGPRETSGPVILVVNACCTQDTKENVIGVCFVGQDITGQKLVMDK 733 (953)
Q Consensus 685 ~~~~~~~~~dG~~~~v~v~~~pi~d~~g~v~gvv~v~~DITerk~~E~~ 733 (953)
++.. .+.+|..+|+.+...|+.+.+|.+.|++++++|||++|++|++
T Consensus 83 ~~~~--~~~~g~~~~~~~~~~~~~~~~g~~~~~~~~~~Dit~~~~~e~e 129 (130)
T 2z6d_A 83 RLLN--YKKDGTPFWNLLTVTPIKDDQGNTIKFIGMQVEVSKYTEGVND 129 (130)
T ss_dssp EEEE--ECTTSCEEEEEEEEEEEECTTSCEEEEEEEEEECCTTC-----
T ss_pred EEEE--EcCCCcEEEEEEEEEEEECCCCCeeEEEEEEecchHHHHhhcc
Confidence 4433 4567999999999999999999999999999999999987754
No 57
>3mqq_A Transcriptional regulator, LUXR family; PAS domain, PSI, MCSG, structural genomics, center for structural genomics; 1.65A {Burkholderia thailandensis} PDB: 3mqo_A
Probab=99.36 E-value=1.9e-12 Score=120.21 Aligned_cols=115 Identities=10% Similarity=0.115 Sum_probs=86.4
Q ss_pred HHHHHHHhcCccEEEEcCCCcEEecCHHHHHHhCCCcchhcCCCccccccCCcH-HHHHHHHHHHhcccceEEEEEEEcc
Q 002210 612 EMVRLIETAAVPILAVDASGNVNGWNSKAAELTGLTVDQAIGTALVDLVAGDSV-DVVKNMLSSAFLEERNVEIKLRAFG 690 (953)
Q Consensus 612 ~l~~lle~~~~~I~~~D~dg~i~~~N~a~~~l~G~~~~eliG~~~~dl~~~~~~-~~~~~~l~~~l~~~~~~e~~~~~~~ 690 (953)
.|+.+++++|++|+ +|.+|+|+++|+++++++||+.++++|+++..+++++.. ..+...+...+..+..+..++..
T Consensus 4 ~~~~~~~~~~~~i~-~~~~g~i~~~N~a~~~l~G~~~~el~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~-- 80 (120)
T 3mqq_A 4 DYKTAFHLAPIGLV-LSRDRVIEDCNDELAAIFRCARADLIGRSFEVLYPSSDEFERIGERISPVMIAHGSYADDRIM-- 80 (120)
T ss_dssp CHHHHHHHCSSEEE-EEETTEEEEECHHHHHHTTSCHHHHTTCBGGGGSSSHHHHHHHHHHHHHHHHHHSCEEEEEEE--
T ss_pred hHHHHHhcCCceEE-EecCCEEHHHHHHHHHHhCcCHHHhCCCchhhccCChhhHHHHHHHHHHHHhcCCcceEEEEE--
Confidence 46789999999996 588999999999999999999999999999877765332 33444444444334444444443
Q ss_pred cCCCCCEEEEEEEEEEeecCCCCEEEEEEEEEecchhHHH
Q 002210 691 PRETSGPVILVVNACCTQDTKENVIGVCFVGQDITGQKLV 730 (953)
Q Consensus 691 ~~~dG~~~~v~v~~~pi~d~~g~v~gvv~v~~DITerk~~ 730 (953)
.++||..+|+.++..|+ +.+|...+++++++|||++|++
T Consensus 81 ~~~dG~~~~~~~~~~~~-~~~~~~~~~v~~~~DITerk~~ 119 (120)
T 3mqq_A 81 KRAGGELFWCHVTGRAL-DRTAPLAAGVWTFEDLSATRRV 119 (120)
T ss_dssp ECTTSCEEEEEEEEEES-STTSTTSSEEEEEEESCC----
T ss_pred EeCCCCEEEEEEEEEEC-CCCCCceeEEEEEEcccHhhcc
Confidence 56799999999999998 5566677889999999999975
No 58
>4eet_B Phototropin-2; LOV, blue light photoreceptor, signaling protein, flavoprote; HET: FMN; 1.20A {Arabidopsis thaliana} PDB: 4ees_A* 4eer_A* 4eep_A* 4eeu_A* 1jnu_A* 1g28_A*
Probab=99.36 E-value=4.9e-12 Score=114.91 Aligned_cols=110 Identities=17% Similarity=0.130 Sum_probs=88.0
Q ss_pred HHhCCCCCCCCeEeecC---CccEEehhHHHHHHhCCChhhhhcccccccccccccccccccCcchHHHHHHHHHHHhcC
Q 002210 744 IVSSPSALIPPIFMTDE---DGRCLEWNDGMEKLSGLKREEAIERMLIGEVFTVKNFGCRVKNHDTLTKLRIVMNKVISG 820 (953)
Q Consensus 744 i~e~~~~li~~I~~~D~---~G~i~~~N~a~~~l~G~~~eeliGk~~~~~~~~~~~~~~~l~~~~~~~~~~~~l~~~~~g 820 (953)
.++++++ +++++|. +|+++++|+++++++||+.++++|+.+. .+++. +....+...+...+..
T Consensus 2 ~l~~~~~---~i~~~d~~~~~g~i~~~N~~~~~~~g~~~~~~~g~~~~-~~~~~----------~~~~~~~~~~~~~~~~ 67 (115)
T 4eet_B 2 SPEFIEK---NFVITDPRLPDNPIIFASDGFLELTEYSREEILGRNAR-FLQGP----------ETDQATVQKIRDAIRD 67 (115)
T ss_dssp ---CCCC---SEEEECTTSTTCCEEEECHHHHHHHCCCHHHHTTSCGG-GGCCT----------TSCHHHHHHHHHHHHT
T ss_pred ccccCCC---cEEEEcCCCCCCcEEEEcHHHHHHHCcCHHHHhCCCHH-HhcCC----------CCChHHHHHHHHHHHc
Confidence 3556666 8999999 9999999999999999999999999864 33322 1112234445555666
Q ss_pred CCcceEEEEEEccCCCEEEEEEEEEEeecCCCCEEEEEEEEEeccHH
Q 002210 821 QDADKILFGFFDQQGKYVEALLSANKRTNAEGKISGILCFLHVASPE 867 (953)
Q Consensus 821 ~~~~~~e~~~~~kdG~~~~v~~s~~pi~d~~G~i~g~v~v~~DITer 867 (953)
+.....++++.+++|+.+|+.++..|+.|.+|.+.+++++++|||++
T Consensus 68 ~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~g~~~~~~~~~~DITer 114 (115)
T 4eet_B 68 QRETTVQLINYTKSGKKFWNLLHLQPVRDQKGELQYFIGVQLDGSDH 114 (115)
T ss_dssp TCCEEEEEEEECTTCCEEEEEEEEEEEECTTSCEEEEEEEEEECSCC
T ss_pred CCCcceEEEEecCCCCEEEEEEEEEEEECCCCCEEEEEEEEEeeccc
Confidence 66777888899999999999999999999999999999999999976
No 59
>2v0u_A NPH1-1, LOV2; kinase, transferase, ATP-binding, serine/threonine-protein kinase, light-induced signal trans phototropin1, nucleotide-binding; HET: FMN; 1.40A {Avena sativa} PDB: 2v0w_A* 2v1b_A* 2v1a_A* 1jnu_A* 1g28_A*
Probab=99.35 E-value=4.7e-12 Score=119.41 Aligned_cols=132 Identities=11% Similarity=-0.022 Sum_probs=110.2
Q ss_pred HHHHHhcCccEEEEcC---CCcEEecCHHHHHHhCCCcchhcCCCccccccCCcHHHHHHHHHHHhcccceEEEEEEEcc
Q 002210 614 VRLIETAAVPILAVDA---SGNVNGWNSKAAELTGLTVDQAIGTALVDLVAGDSVDVVKNMLSSAFLEERNVEIKLRAFG 690 (953)
Q Consensus 614 ~~lle~~~~~I~~~D~---dg~i~~~N~a~~~l~G~~~~eliG~~~~dl~~~~~~~~~~~~l~~~l~~~~~~e~~~~~~~ 690 (953)
+.++++++++++++|. +|+++++|+++++++|++.++++|+++..++++.+.......+...+..+.....++..
T Consensus 5 ~~~~~~~~~~i~~~d~~~~~~~i~~~N~~~~~~~g~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-- 82 (146)
T 2v0u_A 5 ATTLERIEKNFVITDPRLPDNPIIFASDSFLQLTEYSREEILGRNCRFLQGPETDRATVRKIRDAIDNQTEVTVQLIN-- 82 (146)
T ss_dssp CCTGGGSSSCEEEECTTSTTCCEEEECHHHHHHHCCCHHHHTTSCGGGGCCTTSCHHHHHHHHHHHHTTCCEEEEEEE--
T ss_pred HHHHhcCCCcEEEEcCCCCCceEEEEcHHHHHHHCcCHHHHcCCCHHHhcCCcCChHHHHHHHHHHhcCCCcceEEEE--
Confidence 4578999999999999 99999999999999999999999999998888877666666666666445455554444
Q ss_pred cCCCCCEEEEEEEEEEeecCCCCEEEEEEEEEecchhHHHHHHHHHHHHHHHHHHhCC
Q 002210 691 PRETSGPVILVVNACCTQDTKENVIGVCFVGQDITGQKLVMDKYTRIQGDYVGIVSSP 748 (953)
Q Consensus 691 ~~~dG~~~~v~v~~~pi~d~~g~v~gvv~v~~DITerk~~E~~L~~se~~~~~i~e~~ 748 (953)
.+++|..+|+.++..|+.+.+|.+.|++++++|||++|+ ++++.+.+.+++.+++++
T Consensus 83 ~~~~g~~~~~~~~~~~~~~~~g~~~~~~~~~~Dit~~~~-~~~~~~~~~~~~~~~~~~ 139 (146)
T 2v0u_A 83 YTKSGKKFWNLFHLQPMRDQKGDVQYFIGVQLDGTEHVR-DAAEREGVMLIKKTAENI 139 (146)
T ss_dssp ECTTCCEEEEEEEEEEEECTTSCEEEEEEEEEEESSCCC-HHHHHHHHHHHHHHHHHH
T ss_pred EecCCcEEEEEEEEEEeECCCCCEEEEEEEEeechHHHH-HHHHHHHHHHHHHHHhcc
Confidence 456899999999999999999999999999999999999 666677777888877664
No 60
>1d06_A Nitrogen fixation regulatory protein FIXL; oxygen sensor, histidine kinase, PAS, high-resolution, two-C system, signaling protein; HET: HEM; 1.40A {Sinorhizobium meliloti} SCOP: d.110.3.2 PDB: 1ew0_A*
Probab=99.35 E-value=2.6e-12 Score=121.29 Aligned_cols=121 Identities=14% Similarity=0.156 Sum_probs=94.3
Q ss_pred ccHHHHHHHHHHHHHHHHhcCccEEEEcCCCcEEecCHHHHHHhCCCcchhcCCCccccccCCcHHHHHHHHHHHhcccc
Q 002210 601 EKIDELRIITNEMVRLIETAAVPILAVDASGNVNGWNSKAAELTGLTVDQAIGTALVDLVAGDSVDVVKNMLSSAFLEER 680 (953)
Q Consensus 601 ~~~~eL~~~~~~l~~lle~~~~~I~~~D~dg~i~~~N~a~~~l~G~~~~eliG~~~~dl~~~~~~~~~~~~l~~~l~~~~ 680 (953)
+.+++|++.+..++.++++++++|+++|.+|+|++||++++++|||+.++++|+++..++++.+.......+......+.
T Consensus 6 ~~e~~l~~~~~~~~~l~~~~~d~i~~~d~~g~i~~~N~a~~~l~Gy~~~eliG~~~~~l~~~~~~~~~~~~~~~~~~~~~ 85 (130)
T 1d06_A 6 ETEDVVRARDAHLRSILDTVPDATVVSATDGTIVSFNAAAVRQFGYAEEEVIGQNLRILMPEPYRHEHDGYLQRYMATGE 85 (130)
T ss_dssp HHHHHHHHHTSCHHHHHTTCSSEEEEEETTSBEEEECHHHHHHHCCCHHHHTTSBGGGGSCTTHHHHHHHHHHHHHHHCC
T ss_pred HHHHHHHHHHHHHHHHHhhCcCeEEEECCCCeEEEEcHHHHHHHCCCHHHHcCCcHHHHCCchhHHHHHHHHHHHHhcCC
Confidence 35677888888899999999999999999999999999999999999999999999988887766555444444431111
Q ss_pred e----EEEEEEEcccCCCCCEEEEEEEEEEeecCCCCEEEEEEEEEecc
Q 002210 681 N----VEIKLRAFGPRETSGPVILVVNACCTQDTKENVIGVCFVGQDIT 725 (953)
Q Consensus 681 ~----~e~~~~~~~~~~dG~~~~v~v~~~pi~d~~g~v~gvv~v~~DIT 725 (953)
. ...++. ..++||..+|+.++..|+.+. ...+++++++|||
T Consensus 86 ~~~~~~~~e~~--~~~kdG~~~~~~~~~~~~~~~--~~~~~~~~~~DIT 130 (130)
T 1d06_A 86 KRIIGIDRVVS--GQRKDGSTFPMKLAVGEMRSG--GERFFTGFIRDLT 130 (130)
T ss_dssp CSSTTSCEEEE--EECTTSCEEEEEEEEEEEEET--TEEEEEEEEEECC
T ss_pred ccccCCeeEEE--EEeCCCCEEEEEEEEEEEEEC--CeEEEEEEEEECc
Confidence 1 111222 256799999999999999763 3346888899998
No 61
>3h9w_A Diguanylate cyclase with PAS/PAC sensor; alpha-beta protein., structural genomics, PSI-2, protein STR initiative; 1.90A {Marinobacter aquaeolei}
Probab=99.35 E-value=2.5e-12 Score=118.38 Aligned_cols=111 Identities=11% Similarity=-0.031 Sum_probs=94.0
Q ss_pred cCccEEEEc-CCCcEEecCHHHHHHhCCCcchhcCCC-ccccccCCcHHHHHHHHHHHhcccceEEEEEEEcccCCCCCE
Q 002210 620 AAVPILAVD-ASGNVNGWNSKAAELTGLTVDQAIGTA-LVDLVAGDSVDVVKNMLSSAFLEERNVEIKLRAFGPRETSGP 697 (953)
Q Consensus 620 ~~~~I~~~D-~dg~i~~~N~a~~~l~G~~~~eliG~~-~~dl~~~~~~~~~~~~l~~~l~~~~~~e~~~~~~~~~~dG~~ 697 (953)
+++++|.+| .+|+++++|+++++++||+.+++.|.. +.+++||++.+.+...+..++..+..+..+++. .+++|..
T Consensus 2 a~~giw~~d~~~~~~~~~n~~~~~l~G~~~~e~~~~~~~~~~ihpdd~~~~~~~~~~~~~~~~~~~~e~r~--~~~dG~~ 79 (115)
T 3h9w_A 2 TKAIPWKINWQTMAFEYIGPQIEALLGWPQGSWKSVEDWATRMHPEDQEWVVNFCVKQSECGVDHEADYRA--LHRDGHY 79 (115)
T ss_dssp -CCEEEEEETTTTEEEEECTHHHHHHCSCGGGCCBHHHHHHSBCHHHHHHHHHHHHHHHHTTCCEEEEEEE--ECTTSCE
T ss_pred cceEEEEEEcCCCcEEEEChhHHHHhCCChHHccCHHHHHHhcCHHHHHHHHHHHHHHHhcCCcccEEEEE--EcCCCCE
Confidence 578999999 688999999999999999999998832 347899999998888888888655566666665 5679999
Q ss_pred EEEEEEEEEeecCCCCEEEEEEEEEecchhHHHHH
Q 002210 698 VILVVNACCTQDTKENVIGVCFVGQDITGQKLVMD 732 (953)
Q Consensus 698 ~~v~v~~~pi~d~~g~v~gvv~v~~DITerk~~E~ 732 (953)
+|+.+++.|++|.+|++.+++++..|||++|.+|+
T Consensus 80 ~w~~~~~~~~~d~~G~~~~~~G~~~Dit~~k~~~~ 114 (115)
T 3h9w_A 80 VWIRDVVHVVRDDSGEVEALIGFMFDISLEHHHHH 114 (115)
T ss_dssp EEEEEEEEEEECTTSCEEEEEEEEEECGGGGC---
T ss_pred EEEEEEEEEEECCCCCEEEEEEEEeccCccccccc
Confidence 99999999999999999999999999999999875
No 62
>3icy_A Sensor protein; sensory box histidine kinase/response regulator domain, kinase, chlorobium tepidum TLS, PSI-2; 2.68A {Chlorobaculum tepidum}
Probab=99.35 E-value=4e-12 Score=116.55 Aligned_cols=117 Identities=18% Similarity=0.131 Sum_probs=99.7
Q ss_pred HHHHHHHHHhCCCCCCCCeEeecCCccEEehhHHHHHHhCCChhhhhcccccccccccccccccccCcchHHHHHHHHHH
Q 002210 737 IQGDYVGIVSSPSALIPPIFMTDEDGRCLEWNDGMEKLSGLKREEAIERMLIGEVFTVKNFGCRVKNHDTLTKLRIVMNK 816 (953)
Q Consensus 737 se~~~~~i~e~~~~li~~I~~~D~~G~i~~~N~a~~~l~G~~~eeliGk~~~~~~~~~~~~~~~l~~~~~~~~~~~~l~~ 816 (953)
++++|+.++++++. ++|.+|.+|+++++|+++++++||+++++.|+..... .+.++++...+...+..
T Consensus 2 s~~~~~~l~~~~~~---~i~~~d~~~~~~~~n~~~~~~~G~~~~~~~~~~~~~~---------~~i~p~d~~~~~~~~~~ 69 (118)
T 3icy_A 2 NAEELQALVDNIPA---AIYHLDVSGQATIRFRPPAFLKTLVSEHAGTTRLNTL---------SMIHHDDRHMLSNAYSK 69 (118)
T ss_dssp HHHHHHHHHTTCCC---CCEEECTTSCEEECCCCCGGGGGGEEEETTEEEEGGG---------GGBCGGGHHHHHHHHHH
T ss_pred cHHHHHHHHhcCCc---eEEEEEcCCCceEEechhHhhcCCCHHHccCChhHHH---------HHcCHHHHHHHHHHHHH
Confidence 46789999999987 8999999999999999999999999999888753100 22234555567777777
Q ss_pred HhcCCCcceEEEEEEccCCCEEEEEEEEEEeecCCCCEEEEEEEEEecc
Q 002210 817 VISGQDADKILFGFFDQQGKYVEALLSANKRTNAEGKISGILCFLHVAS 865 (953)
Q Consensus 817 ~~~g~~~~~~e~~~~~kdG~~~~v~~s~~pi~d~~G~i~g~v~v~~DIT 865 (953)
...++.....++++.+++|+.+|+.....|+.|.+|.+.+++|+++|||
T Consensus 70 ~~~~~~~~~~e~r~~~~~g~~~w~~~~~~~~~~~~g~~~~~~g~~~DIT 118 (118)
T 3icy_A 70 LREAKHSLTLVYRIVTPEGKLHWIEDHMRSSFSDDGLFSGIDGILCEVT 118 (118)
T ss_dssp HHHSCCEEEEEEEEECTTCCEEEEEEEEEEEECTTSCEEEEEEEEEECC
T ss_pred HHhcCCCceEEEEEECCCCCEEEEEEEEEEEECCCCCEEEEEEEEEecC
Confidence 7777778889999999999999999999999999999999999999998
No 63
>3k3c_A Protein RV1364C/MT1410; sensor, PAS, signal transduction, fatty-acid binding, sigma regulator, signaling protein; HET: PLM; 1.62A {Mycobacterium tuberculosis} PDB: 3k3d_A
Probab=99.35 E-value=5.1e-12 Score=123.22 Aligned_cols=127 Identities=13% Similarity=0.108 Sum_probs=94.7
Q ss_pred HHHHHHHHHHhCCCCCCCCeEeec-CCccEEehhHHHHHHhCCChhhhhcccccccccccccccccccCcchHHHHHHHH
Q 002210 736 RIQGDYVGIVSSPSALIPPIFMTD-EDGRCLEWNDGMEKLSGLKREEAIERMLIGEVFTVKNFGCRVKNHDTLTKLRIVM 814 (953)
Q Consensus 736 ~se~~~~~i~e~~~~li~~I~~~D-~~G~i~~~N~a~~~l~G~~~eeliGk~~~~~~~~~~~~~~~l~~~~~~~~~~~~l 814 (953)
..+++|+.++++++. +|+++| .+|+++++|+++++++|++ +++|+++. .++++.. .. .+...+
T Consensus 14 ~~~~~~~~~~~~~~~---~i~~~d~~~~~i~~~N~~~~~~~g~~--~~~G~~~~-~~~~~~~-------~~---~~~~~~ 77 (158)
T 3k3c_A 14 GAAEDVRRIFEHIPA---ILVGLEGPDHRFVAVNAAYRGFSPLL--DTVGQPAR-EVYPELE-------GQ---QIYEML 77 (158)
T ss_dssp CCHHHHHHHHHHCSS---EEEEEETTTTEEEEECHHHHHHCTTC--CSTTSBHH-HHSGGGG-------GT---THHHHH
T ss_pred HHHHHHHHHHhcCCc---eEEEEECCCcEeHHHHHHHHHHcCCc--hhcCCcHH-HhCCchh-------HH---HHHHHH
Confidence 345679999999987 899999 9999999999999999999 89999875 3444311 01 133345
Q ss_pred HHHhcCCCc-ceEEEEE--EccC--CCEEEEEEEEEEeecCCCCEEEEEEEEEeccHHHHHHHHHHHHH
Q 002210 815 NKVISGQDA-DKILFGF--FDQQ--GKYVEALLSANKRTNAEGKISGILCFLHVASPELQYALQVQRIS 878 (953)
Q Consensus 815 ~~~~~g~~~-~~~e~~~--~~kd--G~~~~v~~s~~pi~d~~G~i~g~v~v~~DITerK~~e~elq~~a 878 (953)
...+..+.+ ...++.+ .+++ |..+|+.++..|++|.+|.+.|++++++|||++|+++.++++.+
T Consensus 78 ~~~~~~g~~~~~~~~~~~~~~~~~~g~~~~~~~~~~pi~~~~g~~~g~~~~~~DITe~k~~e~~l~~~~ 146 (158)
T 3k3c_A 78 DRVYQTGEPQSGSEWRLQTDYDGSGVEERYFDFVVTPRRRADGSIEGVQLIVDDVTSRVRARQAAEARV 146 (158)
T ss_dssp HHHHHHCCCEEEEEEEEEEESSSSCEEEEEEEEEEEEEECTTSCEEEEEEEEEECHHHHHHHHHHHHHH
T ss_pred HHHHHhCCcccccceeEEeccCCCCcceEEEEEEEEEeECCCCCEEEEEEEEEehhHHHHHHHHHHHHH
Confidence 555533333 2222323 3323 77899999999999999999999999999999999887765433
No 64
>2z6d_A Phototropin-2; PAS-fold, LOV-fold, alternative splicing, ATP-binding, chromophore, flavoprotein, FMN, kinase, membrane, nucleotide-binding; HET: FMN; 2.00A {Arabidopsis thaliana} PDB: 2z6c_A*
Probab=99.34 E-value=6e-12 Score=115.71 Aligned_cols=123 Identities=11% Similarity=0.048 Sum_probs=94.2
Q ss_pred HHHHHHHHHHhCCCCCCCCeEeec---CCccEEehhHHHHHHhCCChhhhhcccccccccccccccccccCcchHHHHHH
Q 002210 736 RIQGDYVGIVSSPSALIPPIFMTD---EDGRCLEWNDGMEKLSGLKREEAIERMLIGEVFTVKNFGCRVKNHDTLTKLRI 812 (953)
Q Consensus 736 ~se~~~~~i~e~~~~li~~I~~~D---~~G~i~~~N~a~~~l~G~~~eeliGk~~~~~~~~~~~~~~~l~~~~~~~~~~~ 812 (953)
+++..++.+++++++ +++++| .+|+++++|+++++++|++.++++|+.+.. +++.. ....+..
T Consensus 3 ~~~~~~~~~~~~~~~---~i~~~d~~d~~~~i~~~N~~~~~~~g~~~~~~~g~~~~~-~~~~~----------~~~~~~~ 68 (130)
T 2z6d_A 3 RVSQELKTALSTLQQ---TFVVSDATQPHCPIVYASSGFFTMTGYSSKEIVGRNCRF-LQGPD----------TDKNEVA 68 (130)
T ss_dssp ----CHHHHHHHTTC---EEEEEETTSTTCCEEEECHHHHHHHCCCHHHHTTSCGGG-GCCTT----------SCHHHHH
T ss_pred hHHHHHHHHHHhccc---ceeeeeccCCCCcEEEecHHHHHHhCcCHHHHcCCChhh-ccCCC----------CCchHHH
Confidence 445678889999887 899999 999999999999999999999999998753 22221 1112333
Q ss_pred HHHHHhcCCCcceEEEEEEccCCCEEEEEEEEEEeecCCCCEEEEEEEEEeccHHHHHHH
Q 002210 813 VMNKVISGQDADKILFGFFDQQGKYVEALLSANKRTNAEGKISGILCFLHVASPELQYAL 872 (953)
Q Consensus 813 ~l~~~~~g~~~~~~e~~~~~kdG~~~~v~~s~~pi~d~~G~i~g~v~v~~DITerK~~e~ 872 (953)
.+...+..+.....++.+.+++|+.+|+.++..|+.+.+|.+.|++++++|||++|+++.
T Consensus 69 ~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~g~~~~~~~~~~Dit~~~~~e~ 128 (130)
T 2z6d_A 69 KIRDCVKNGKSYCGRLLNYKKDGTPFWNLLTVTPIKDDQGNTIKFIGMQVEVSKYTEGVN 128 (130)
T ss_dssp HHHHHHHTTCCEEEEEEEECTTSCEEEEEEEEEEEECTTSCEEEEEEEEEECCTTC----
T ss_pred HHHHHHHcCCcceeEEEEEcCCCcEEEEEEEEEEEECCCCCeeEEEEEEecchHHHHhhc
Confidence 344455555666778888899999999999999999999999999999999999987663
No 65
>2v0u_A NPH1-1, LOV2; kinase, transferase, ATP-binding, serine/threonine-protein kinase, light-induced signal trans phototropin1, nucleotide-binding; HET: FMN; 1.40A {Avena sativa} PDB: 2v0w_A* 2v1b_A* 2v1a_A* 1jnu_A* 1g28_A*
Probab=99.34 E-value=6.7e-12 Score=118.38 Aligned_cols=115 Identities=14% Similarity=0.087 Sum_probs=93.5
Q ss_pred HHHHHhCCCCCCCCeEeecC---CccEEehhHHHHHHhCCChhhhhcccccccccccccccccccCcchHHHHHHHHHHH
Q 002210 741 YVGIVSSPSALIPPIFMTDE---DGRCLEWNDGMEKLSGLKREEAIERMLIGEVFTVKNFGCRVKNHDTLTKLRIVMNKV 817 (953)
Q Consensus 741 ~~~i~e~~~~li~~I~~~D~---~G~i~~~N~a~~~l~G~~~eeliGk~~~~~~~~~~~~~~~l~~~~~~~~~~~~l~~~ 817 (953)
++.++++++. +++++|. +|+++++|+++++++|++.++++|+++...+.+. ....+...+...
T Consensus 4 l~~~~~~~~~---~i~~~d~~~~~~~i~~~N~~~~~~~g~~~~~~~g~~~~~~~~~~-----------~~~~~~~~~~~~ 69 (146)
T 2v0u_A 4 LATTLERIEK---NFVITDPRLPDNPIIFASDSFLQLTEYSREEILGRNCRFLQGPE-----------TDRATVRKIRDA 69 (146)
T ss_dssp CCCTGGGSSS---CEEEECTTSTTCCEEEECHHHHHHHCCCHHHHTTSCGGGGCCTT-----------SCHHHHHHHHHH
T ss_pred HHHHHhcCCC---cEEEEcCCCCCceEEEEcHHHHHHHCcCHHHHcCCCHHHhcCCc-----------CChHHHHHHHHH
Confidence 4456777776 8999999 9999999999999999999999999875322221 112234445555
Q ss_pred hcCCCcceEEEEEEccCCCEEEEEEEEEEeecCCCCEEEEEEEEEeccHHHH
Q 002210 818 ISGQDADKILFGFFDQQGKYVEALLSANKRTNAEGKISGILCFLHVASPELQ 869 (953)
Q Consensus 818 ~~g~~~~~~e~~~~~kdG~~~~v~~s~~pi~d~~G~i~g~v~v~~DITerK~ 869 (953)
+..+.....++.+.+++|..+|+.++..|+.+.+|.+.|++++++|||++|+
T Consensus 70 ~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~g~~~~~~~~~~Dit~~~~ 121 (146)
T 2v0u_A 70 IDNQTEVTVQLINYTKSGKKFWNLFHLQPMRDQKGDVQYFIGVQLDGTEHVR 121 (146)
T ss_dssp HHTTCCEEEEEEEECTTCCEEEEEEEEEEEECTTSCEEEEEEEEEEESSCCC
T ss_pred HhcCCCcceEEEEEecCCcEEEEEEEEEEeECCCCCEEEEEEEEeechHHHH
Confidence 5666667788889999999999999999999999999999999999999987
No 66
>3luq_A Sensor protein; PAS, histidine, kinase, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: PGE; 2.49A {Geobacter sulfurreducens}
Probab=99.34 E-value=5.7e-12 Score=114.41 Aligned_cols=113 Identities=14% Similarity=0.133 Sum_probs=91.2
Q ss_pred HHHHHHHHhCCCCCCCCeEeecCCccEEehhHHHHHHhCCChhhhhcccccccccccccccccccCcchHHHHHHHHHHH
Q 002210 738 QGDYVGIVSSPSALIPPIFMTDEDGRCLEWNDGMEKLSGLKREEAIERMLIGEVFTVKNFGCRVKNHDTLTKLRIVMNKV 817 (953)
Q Consensus 738 e~~~~~i~e~~~~li~~I~~~D~~G~i~~~N~a~~~l~G~~~eeliGk~~~~~~~~~~~~~~~l~~~~~~~~~~~~l~~~ 817 (953)
+++|+.+++++++ +++++|.+|+++++|+++++++|++.++++|+.+.+ +++.. ...+...+...
T Consensus 2 e~~~~~~~~~~~~---~i~~~d~~g~i~~~N~~~~~~~g~~~~~~~g~~~~~-~~~~~-----------~~~~~~~~~~~ 66 (114)
T 3luq_A 2 DERLRLFTEHAPA---ALAMFDREMRYLAVSRRWREDYGLGDGDILGMSHYD-IFPEI-----------GEEWKSVHRRG 66 (114)
T ss_dssp CHHHHHHHHTCSS---EEEEEETTCBEEEECHHHHHHTTCCSSCCTTCBHHH-HCTTC-----------CHHHHHHHHHH
T ss_pred hHHHHHHHhcCCc---eEEEEcCCcEEEEECHHHHHHHCCCHHHHcCCcHHH-HCCcc-----------HHHHHHHHHHH
Confidence 4578899999987 899999999999999999999999999999998763 33331 12244455666
Q ss_pred hcCCCcceEEEEEEccCCCEEEEEEEEEEeecCCCCEEEEEEEEEecc
Q 002210 818 ISGQDADKILFGFFDQQGKYVEALLSANKRTNAEGKISGILCFLHVAS 865 (953)
Q Consensus 818 ~~g~~~~~~e~~~~~kdG~~~~v~~s~~pi~d~~G~i~g~v~v~~DIT 865 (953)
..++.....+..+.+++|+.+|+.++..|++|.+|.+.|++++++|||
T Consensus 67 ~~~~~~~~~~~~~~~~~g~~~~~~~~~~p~~~~~g~~~~~~~~~~DIT 114 (114)
T 3luq_A 67 LAGEVIRVEEDCFVRADGRTQWLRWEVRPWYEGEGRVGGVVIFTEDIT 114 (114)
T ss_dssp HTTCCEEEEEEEEEC--CCEEEEEEEEEEEECTTSCEEEEEEEEEECC
T ss_pred hcCCcceeeeeEEEcCCCcEEEEEEEEEEeECCCCCEEEEEEEEeeCC
Confidence 666655444457889999999999999999999999999999999998
No 67
>3luq_A Sensor protein; PAS, histidine, kinase, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: PGE; 2.49A {Geobacter sulfurreducens}
Probab=99.34 E-value=9.1e-12 Score=113.04 Aligned_cols=112 Identities=16% Similarity=0.056 Sum_probs=90.7
Q ss_pred HHHHHHHHhcCccEEEEcCCCcEEecCHHHHHHhCCCcchhcCCCccccccCCcHHHHHHHHHHHhcccceEEEEEEEcc
Q 002210 611 NEMVRLIETAAVPILAVDASGNVNGWNSKAAELTGLTVDQAIGTALVDLVAGDSVDVVKNMLSSAFLEERNVEIKLRAFG 690 (953)
Q Consensus 611 ~~l~~lle~~~~~I~~~D~dg~i~~~N~a~~~l~G~~~~eliG~~~~dl~~~~~~~~~~~~l~~~l~~~~~~e~~~~~~~ 690 (953)
++++.++++++++++++|.+|+++++|+++++++|++.++++|+++.+++ +++.+.....+..++.+..........
T Consensus 3 ~~~~~~~~~~~~~i~~~d~~g~i~~~N~~~~~~~g~~~~~~~g~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~-- 79 (114)
T 3luq_A 3 ERLRLFTEHAPAALAMFDREMRYLAVSRRWREDYGLGDGDILGMSHYDIF-PEIGEEWKSVHRRGLAGEVIRVEEDCF-- 79 (114)
T ss_dssp HHHHHHHHTCSSEEEEEETTCBEEEECHHHHHHTTCCSSCCTTCBHHHHC-TTCCHHHHHHHHHHHTTCCEEEEEEEE--
T ss_pred HHHHHHHhcCCceEEEEcCCcEEEEECHHHHHHHCCCHHHHcCCcHHHHC-CccHHHHHHHHHHHhcCCcceeeeeEE--
Confidence 56788999999999999999999999999999999999999999999888 444455666666666433322222122
Q ss_pred cCCCCCEEEEEEEEEEeecCCCCEEEEEEEEEecc
Q 002210 691 PRETSGPVILVVNACCTQDTKENVIGVCFVGQDIT 725 (953)
Q Consensus 691 ~~~dG~~~~v~v~~~pi~d~~g~v~gvv~v~~DIT 725 (953)
.+++|..+|+.++..|+++.+|.+.|++++++|||
T Consensus 80 ~~~~g~~~~~~~~~~p~~~~~g~~~~~~~~~~DIT 114 (114)
T 3luq_A 80 VRADGRTQWLRWEVRPWYEGEGRVGGVVIFTEDIT 114 (114)
T ss_dssp EC--CCEEEEEEEEEEEECTTSCEEEEEEEEEECC
T ss_pred EcCCCcEEEEEEEEEEeECCCCCEEEEEEEEeeCC
Confidence 45689999999999999999999999999999998
No 68
>1n9l_A PHOT-LOV1, putative blue light receptor; phototropin, flavin, electron transport; HET: FMN; 1.90A {Chlamydomonas reinhardtii} SCOP: d.110.3.6 PDB: 1n9n_A* 1n9o_A*
Probab=99.33 E-value=1.3e-11 Score=113.02 Aligned_cols=105 Identities=14% Similarity=0.091 Sum_probs=85.3
Q ss_pred cCccEEEEcC---CCcEEecCHHHHHHhCCCcchhcCCCccccccCCcHHHHHHHHHHHhcccceEEEEEEEcccCCCCC
Q 002210 620 AAVPILAVDA---SGNVNGWNSKAAELTGLTVDQAIGTALVDLVAGDSVDVVKNMLSSAFLEERNVEIKLRAFGPRETSG 696 (953)
Q Consensus 620 ~~~~I~~~D~---dg~i~~~N~a~~~l~G~~~~eliG~~~~dl~~~~~~~~~~~~l~~~l~~~~~~e~~~~~~~~~~dG~ 696 (953)
++++|+++|. +|+|+++|+++++++||+.++++|++...+.++.........+..++..+.....++.. .++||+
T Consensus 2 ~~~~i~i~d~~~~~g~i~~~N~a~~~l~Gy~~~e~~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~e~~~--~~kdG~ 79 (109)
T 1n9l_A 2 LRHTFVVADATLPDCPLVYASEGFYAMTGYGPDEVLGHNCRFLQGEGTDPKEVQKIRDAIKKGEACSVRLLN--YRKDGT 79 (109)
T ss_dssp CSCEEEEEETTSTTCCEEEECHHHHHHHCCCHHHHTTSCGGGGCCTTCCHHHHHHHHHHHHHTCCEEEEEEE--ECTTSC
T ss_pred CccEEEEEcCCCCCCeEEEEchHHHHHHCcCHHHHcCCCchhcCCCCCCHHHHHHHHHHHHcCCcEEEEEEE--EcCCCC
Confidence 5789999994 79999999999999999999999999776666554443444555555444455555444 568999
Q ss_pred EEEEEEEEEEeecCCCCEEEEEEEEEecch
Q 002210 697 PVILVVNACCTQDTKENVIGVCFVGQDITG 726 (953)
Q Consensus 697 ~~~v~v~~~pi~d~~g~v~gvv~v~~DITe 726 (953)
.+|+.++..|+++.+|.+.+++++.+|||+
T Consensus 80 ~~~~~~~~~pi~d~~G~~~~~v~~~~DITe 109 (109)
T 1n9l_A 80 PFWNLLTVTPIKTPDGRVSKFVGVQVDVTS 109 (109)
T ss_dssp EEEEEEEEEEEECTTSCEEEEEEEEEECCC
T ss_pred EEEEEEEEEEEECCCCCEEEEEEEEEeCCC
Confidence 999999999999999999999999999996
No 69
>1v9y_A Heme PAS sensor protein; signaling protein; HET: HEM; 1.32A {Escherichia coli} SCOP: d.110.3.2 PDB: 1v9z_A* 1vb6_A* 1s67_L* 1s66_L*
Probab=99.31 E-value=5e-12 Score=123.54 Aligned_cols=142 Identities=20% Similarity=0.177 Sum_probs=81.6
Q ss_pred EEEEecchhHHHHHHHHHHHHHHHHHHhCCCCCCCCeEeecCCccEEehhHHHHHHhCCChhhhhccccccccccccccc
Q 002210 719 FVGQDITGQKLVMDKYTRIQGDYVGIVSSPSALIPPIFMTDEDGRCLEWNDGMEKLSGLKREEAIERMLIGEVFTVKNFG 798 (953)
Q Consensus 719 ~v~~DITerk~~E~~L~~se~~~~~i~e~~~~li~~I~~~D~~G~i~~~N~a~~~l~G~~~eeliGk~~~~~~~~~~~~~ 798 (953)
-+..+++..++..+++.+.+..|+.++++.++ +++++|.+|+++++|+++++++|++.++++|+.+.. +++....
T Consensus 20 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~---~i~~~d~~g~i~~~N~~~~~l~g~~~~~~~g~~~~~-~~~~~~~- 94 (167)
T 1v9y_A 20 HMRQDAEVIMKLTDADNAADGIFFPALEQNMM---GAVLINENDEVMFFNPAAEKLWGYKREEVIGNNIDM-LIPRDLR- 94 (167)
T ss_dssp --------------------CCHHHHHHTCSS---EEEEECTTSBEEEECHHHHHHHSCCGGGTTTSBGGG-GSCGGGT-
T ss_pred HHHhhHHHHHHHHHHHhhhhHHHHHHHHhCCC---CEEEECCCCcEEEECHHHHHHhCCCHHHHcCCChhh-ccCcccc-
Confidence 34578888888899999999999999999987 899999999999999999999999999999998753 3333110
Q ss_pred ccccCcchHHHHHHHHHHHhcCCCc----ceEEEEEEccCCCEEEEEEEEEEeecCCCCEEEEEEEEEeccHHHHHHHHH
Q 002210 799 CRVKNHDTLTKLRIVMNKVISGQDA----DKILFGFFDQQGKYVEALLSANKRTNAEGKISGILCFLHVASPELQYALQV 874 (953)
Q Consensus 799 ~~l~~~~~~~~~~~~l~~~~~g~~~----~~~e~~~~~kdG~~~~v~~s~~pi~d~~G~i~g~v~v~~DITerK~~e~el 874 (953)
.. +...+.....+... ...++.+.+++|..+|+.++..|+ +.+|... ++++++|||++|+.+.++
T Consensus 95 ------~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~-~~~g~~~-~~~~~~DiT~~~~~e~~l 163 (167)
T 1v9y_A 95 ------PA---HPEYIRHNREGGKARVEGMSRELQLEKKDGSKIWTRFALSKV-SAEGKVY-YLALVRDASVEMAQKEQT 163 (167)
T ss_dssp ------TT---HHHHHHHHHC----------CEEEEECTTSCEEEEEEEEEEE-EETTEEE-EEEEEEC-----------
T ss_pred ------ch---HHHHHHHHhhcCCCcccccceEEEEEcCCCcEEEEEEEEEEE-ecCCCEE-EEEEEecCcHHHHHHHHH
Confidence 11 22333344444332 355778889999999999999998 4566664 899999999999887665
Q ss_pred HH
Q 002210 875 QR 876 (953)
Q Consensus 875 q~ 876 (953)
++
T Consensus 164 ~~ 165 (167)
T 1v9y_A 164 RQ 165 (167)
T ss_dssp --
T ss_pred Hh
Confidence 54
No 70
>3icy_A Sensor protein; sensory box histidine kinase/response regulator domain, kinase, chlorobium tepidum TLS, PSI-2; 2.68A {Chlorobaculum tepidum}
Probab=99.29 E-value=9.4e-12 Score=114.01 Aligned_cols=115 Identities=16% Similarity=0.125 Sum_probs=101.5
Q ss_pred HHHHHHHHHHhcCccEEEEcCCCcEEecCHHHHHHhCCCcchhcCCCc--cccccCCcHHHHHHHHHHHhcccceEEEEE
Q 002210 609 ITNEMVRLIETAAVPILAVDASGNVNGWNSKAAELTGLTVDQAIGTAL--VDLVAGDSVDVVKNMLSSAFLEERNVEIKL 686 (953)
Q Consensus 609 ~~~~l~~lle~~~~~I~~~D~dg~i~~~N~a~~~l~G~~~~eliG~~~--~dl~~~~~~~~~~~~l~~~l~~~~~~e~~~ 686 (953)
++++|+.++++++++++.+|.+|.++++|+++.+++||+.+++.|... .++++|++.+.+...+...+..+..+..++
T Consensus 2 s~~~~~~l~~~~~~~i~~~d~~~~~~~~n~~~~~~~G~~~~~~~~~~~~~~~~i~p~d~~~~~~~~~~~~~~~~~~~~e~ 81 (118)
T 3icy_A 2 NAEELQALVDNIPAAIYHLDVSGQATIRFRPPAFLKTLVSEHAGTTRLNTLSMIHHDDRHMLSNAYSKLREAKHSLTLVY 81 (118)
T ss_dssp HHHHHHHHHTTCCCCCEEECTTSCEEECCCCCGGGGGGEEEETTEEEEGGGGGBCGGGHHHHHHHHHHHHHSCCEEEEEE
T ss_pred cHHHHHHHHhcCCceEEEEEcCCCceEEechhHhhcCCCHHHccCChhHHHHHcCHHHHHHHHHHHHHHHhcCCCceEEE
Confidence 356789999999999999999999999999999999999999888754 578999999988888888876666666666
Q ss_pred EEcccCCCCCEEEEEEEEEEeecCCCCEEEEEEEEEecc
Q 002210 687 RAFGPRETSGPVILVVNACCTQDTKENVIGVCFVGQDIT 725 (953)
Q Consensus 687 ~~~~~~~dG~~~~v~v~~~pi~d~~g~v~gvv~v~~DIT 725 (953)
+. .+++|..+|+.....|+++.+|.+.+++++++|||
T Consensus 82 r~--~~~~g~~~w~~~~~~~~~~~~g~~~~~~g~~~DIT 118 (118)
T 3icy_A 82 RI--VTPEGKLHWIEDHMRSSFSDDGLFSGIDGILCEVT 118 (118)
T ss_dssp EE--ECTTCCEEEEEEEEEEEECTTSCEEEEEEEEEECC
T ss_pred EE--ECCCCCEEEEEEEEEEEECCCCCEEEEEEEEEecC
Confidence 65 46789999999999999999999999999999998
No 71
>3eeh_A Putative light and redox sensing histidine kinase; structural genomic MCSG, protein structure initiative, midwest center for STRU genomics; HET: PG5; 1.95A {Haloarcula marismortui}
Probab=99.29 E-value=9.8e-12 Score=113.98 Aligned_cols=120 Identities=13% Similarity=0.137 Sum_probs=96.5
Q ss_pred HHHHHHHHHHHHHHHHhcCccEEEEcCC-CcEEecCHHHHHHhCCCcchhcCCC--ccccccCCcHHHHHHHHHHHhccc
Q 002210 603 IDELRIITNEMVRLIETAAVPILAVDAS-GNVNGWNSKAAELTGLTVDQAIGTA--LVDLVAGDSVDVVKNMLSSAFLEE 679 (953)
Q Consensus 603 ~~eL~~~~~~l~~lle~~~~~I~~~D~d-g~i~~~N~a~~~l~G~~~~eliG~~--~~dl~~~~~~~~~~~~l~~~l~~~ 679 (953)
.++|++.+++++.++++++++++++|.+ |+++++|+++++++|++.++++|.+ +.+++++++...+...+.... .+
T Consensus 3 e~~l~~~~~~~~~~~~~~~~~i~~~d~~~~~i~~~n~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~ 81 (125)
T 3eeh_A 3 KQQAAKSERRVRELTEATNDILWEFTADLSEVLVINSAYEDIWGRSVAKLRENPHDFLNGIHPEDRELMKDTMQSLM-DG 81 (125)
T ss_dssp -------CHHHHHHHSCCCCEEEEEETTSSCEEEECTHHHHHHSSCHHHHHHCGGGGGGGBCHHHHHHHHHHHHHHH-TT
T ss_pred HHHHHHHHHHHHHHHhcCCceEEEEEcCCCcEEEecHHHHHHHCCCHHHHccCcHHHHHhcCHHHHHHHHHHHHHHH-cC
Confidence 4567788889999999999999999999 9999999999999999999999887 667888888777777766633 33
Q ss_pred ceEEEEEEEcccCCCCCEEEEEEEEEEeecCCCCEEEEEEEEEecc
Q 002210 680 RNVEIKLRAFGPRETSGPVILVVNACCTQDTKENVIGVCFVGQDIT 725 (953)
Q Consensus 680 ~~~e~~~~~~~~~~dG~~~~v~v~~~pi~d~~g~v~gvv~v~~DIT 725 (953)
.....+++. .+++|..+|+.++..|+.+.+|.+.+++++++|||
T Consensus 82 ~~~~~e~~~--~~~~g~~~~~~~~~~~~~~~~g~~~~~~~~~~DIT 125 (125)
T 3eeh_A 82 ESADVECRV--NATEEYQRWVWIQGEPITNDAGETVRVAGFARDIT 125 (125)
T ss_dssp CCEEEEEEE--CGGGTTCEEEEEEEEEEECTTSCEEEEEEEEEECC
T ss_pred CCccEEEEE--EcCCCCEEEEEEecEEEECCCCCEEEEEEEEEecC
Confidence 344555444 45679999999999999999999999999999998
No 72
>2r78_A Sensor protein; sensory box sensor histidine kinase/response regulator, structural genomics, PSI, MCSG; 1.60A {Geobacter sulfurreducens pca}
Probab=99.29 E-value=3.1e-11 Score=111.88 Aligned_cols=113 Identities=16% Similarity=0.132 Sum_probs=84.1
Q ss_pred HHHHHHHHHHHHHHhcCccEEEEcCCCcEEecCHHHHHHhCCCcchhcCCCccccccCCcHHHHHHHHHHHhcccceEEE
Q 002210 605 ELRIITNEMVRLIETAAVPILAVDASGNVNGWNSKAAELTGLTVDQAIGTALVDLVAGDSVDVVKNMLSSAFLEERNVEI 684 (953)
Q Consensus 605 eL~~~~~~l~~lle~~~~~I~~~D~dg~i~~~N~a~~~l~G~~~~eliG~~~~dl~~~~~~~~~~~~l~~~l~~~~~~e~ 684 (953)
+|++++++|+.++++++++|+++|.+|+|+++|+++++++||+.++++|+++..+.++.........+.... .+.....
T Consensus 5 ~l~~se~~~~~l~e~~~d~i~~~d~~g~i~~vN~a~~~l~Gy~~~el~g~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~ 83 (117)
T 2r78_A 5 NLYFQSNAYRALFEHAIDGIFIMDAEGHYLDVNPAICSAIGYTRDEFLALDWGVLSRGVDSGWAAASLARIV-GGEPLRE 83 (117)
T ss_dssp SHHHHHHHHHHHHHHCSSEEEEECTTSBEEEECHHHHHHHCCCHHHHTTCBTTTTTTCSTTSHHHHHHHHHH-TTCCEEE
T ss_pred HHHHhHHHHHHHHhcCCceEEEECCCCCEEEecHHHHHHHCcCHHHHcCCCHHHhCCccchhHHHHHHHHHH-cCCcEEE
Confidence 477888999999999999999999999999999999999999999999998876654433222223333322 2333333
Q ss_pred EEEEcccCCCCCEEEEEEEEEEeecCCCCEEEEEEEEEecc
Q 002210 685 KLRAFGPRETSGPVILVVNACCTQDTKENVIGVCFVGQDIT 725 (953)
Q Consensus 685 ~~~~~~~~~dG~~~~v~v~~~pi~d~~g~v~gvv~v~~DIT 725 (953)
+.+. .++||+.+|+.++..|+. +|. ++++++|||
T Consensus 84 e~~~--~~kdG~~~~v~~~~~~~~--~g~---~~~i~~DIT 117 (117)
T 2r78_A 84 ERTV--WTRNGDQLTVELSAHLLP--DGK---ILGIARDVS 117 (117)
T ss_dssp EEEE--ECTTSCEEEEEEEEEECT--TSC---EEEEEEC--
T ss_pred EEEE--EecCCCEEEEEEEEEEec--CCe---EEEEEEeCC
Confidence 4333 577999999999999886 455 566789998
No 73
>3mxq_A Sensor protein; PSI2, MCSG, structural genomics, protein structure initiativ midwest center for structural genomics; 2.78A {Vibrio cholerae o1 biovar el tor}
Probab=99.28 E-value=5.2e-12 Score=123.49 Aligned_cols=123 Identities=10% Similarity=0.070 Sum_probs=90.5
Q ss_pred HHHHHHHHHHHHHhCCCCCCCCeEeecCCccEEehhHHHHHHhCCChhhhhcccccccccccccccccccCcchHHHHHH
Q 002210 733 KYTRIQGDYVGIVSSPSALIPPIFMTDEDGRCLEWNDGMEKLSGLKREEAIERMLIGEVFTVKNFGCRVKNHDTLTKLRI 812 (953)
Q Consensus 733 ~L~~se~~~~~i~e~~~~li~~I~~~D~~G~i~~~N~a~~~l~G~~~eeliGk~~~~~~~~~~~~~~~l~~~~~~~~~~~ 812 (953)
++++++..++.+++++++ +|+++|.+|+|++||+++++++|+++++++|+++. +++|. ....+..
T Consensus 16 ~~~~~~~~l~~il~~~~~---gi~v~D~~g~I~~~N~a~~~~~G~~~~eviG~~~~-~~~p~-----------~~~~~~~ 80 (152)
T 3mxq_A 16 AMAKSRLLLSELLDQLSF---ALCIVRNDYVIVKVNEYFESRVIFDGETMQGKNIL-ELFPE-----------SADYLKR 80 (152)
T ss_dssp HHHHHHHHHHHHHHHHCC---EEEEEETTSBEEEECHHHHHTSSSCHHHHTTSBHH-HHSGG-----------GHHHHHH
T ss_pred HHHHHHHHHHHHHhcCCC---CEEEEcCCCEEEEECHHHHHHHCcCHHHHCCCCHH-HhcCC-----------hHHHHHH
Confidence 456677788999999987 99999999999999999999999999999999986 44443 1122455
Q ss_pred HHHHHhcCCCcce---------EEEEE---EccCCCEEEEEEEEEEeecCCCCEEEEEEEEEeccHHHHH
Q 002210 813 VMNKVISGQDADK---------ILFGF---FDQQGKYVEALLSANKRTNAEGKISGILCFLHVASPELQY 870 (953)
Q Consensus 813 ~l~~~~~g~~~~~---------~e~~~---~~kdG~~~~v~~s~~pi~d~~G~i~g~v~v~~DITerK~~ 870 (953)
.+..++..+.+.. +++.. ..++|+..|..++..|+.|.+|++.|++++++|||+++.+
T Consensus 81 ~l~~vl~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ti~Pl~d~~G~v~gv~~ii~DVTe~~~a 150 (152)
T 3mxq_A 81 KIDTALVIESSSFSSWEQKPHLLPFKSSRPVSGEEEQMYQNLEVIPIHSEDGTIEHVCLCVYDVTIQASQ 150 (152)
T ss_dssp HHHHHHHHTSCEEEECCSSSCSSCC----------CCEEEEEEEEEEECTTSCEEEEEEEEEEEECC---
T ss_pred HHHHHHhcCCceeeecccccccccccccCCCCCCCcEEEEEEEEEEEECCCCCEEEEEEEEEECCHHHhc
Confidence 5666665443311 11111 2356778899999999999999999999999999998743
No 74
>2wkq_A NPH1-1, RAS-related C3 botulinum toxin substrate 1; transferase, cell adhesion, nucleotide-binding, protein engineering, RAS superfamily LOV2; HET: GTP FMN; 1.60A {Avena sativa} PDB: 2wkr_A* 2wkp_A*
Probab=99.27 E-value=2.3e-11 Score=134.96 Aligned_cols=118 Identities=14% Similarity=0.105 Sum_probs=95.7
Q ss_pred HHHhCCCCCCCCeEeecC---CccEEehhHHHHHHhCCChhhhhcccccccccccccccccccCcchHHHHHHHHHHHhc
Q 002210 743 GIVSSPSALIPPIFMTDE---DGRCLEWNDGMEKLSGLKREEAIERMLIGEVFTVKNFGCRVKNHDTLTKLRIVMNKVIS 819 (953)
Q Consensus 743 ~i~e~~~~li~~I~~~D~---~G~i~~~N~a~~~l~G~~~eeliGk~~~~~~~~~~~~~~~l~~~~~~~~~~~~l~~~~~ 819 (953)
.+++++++ +|+++|. +|+|+++|+++++++||++++++|+++.. +++++ ........+...+.
T Consensus 15 ~~~~~~~~---~i~~~D~~~~~g~i~~~N~a~~~l~G~~~~el~G~~~~~-l~~~~----------~~~~~~~~~~~~~~ 80 (332)
T 2wkq_A 15 TTLERIEK---NFVITDPRLPDNPIIFASDSFLQLTEYSREEILGRNARF-LQGPE----------TDRATVRKIRDAID 80 (332)
T ss_dssp CCGGGCCS---EEEEECTTSTTCCEEEECHHHHHHHCCCHHHHTTSCGGG-GCCTT----------CCHHHHHHHHHHHH
T ss_pred hHhhcCCC---cEEEecCCCCCCCEEEeehHHHHHhCCCHHHHcCCCchh-hcCCC----------CCHHHHHHHHHHHH
Confidence 35566766 8999999 99999999999999999999999998753 33221 11123334555566
Q ss_pred CCCcceEEEEEEccCCCEEEEEEEEEEeecCCCCEEEEEEEEEeccHHHHHHHHH
Q 002210 820 GQDADKILFGFFDQQGKYVEALLSANKRTNAEGKISGILCFLHVASPELQYALQV 874 (953)
Q Consensus 820 g~~~~~~e~~~~~kdG~~~~v~~s~~pi~d~~G~i~g~v~v~~DITerK~~e~el 874 (953)
.+..+..+++++++||+.+|+.++..|++|.+|++.|++++++|||++|+.++++
T Consensus 81 ~~~~~~~e~~~~~~dG~~~~~~~~~~pi~d~~g~~~~~v~~~~DITe~k~~e~~~ 135 (332)
T 2wkq_A 81 NQTEVTVQLINYTKSGKKFWNLFHLQPMRDQKGDVQYFIGVQLDGTEHVRDAAER 135 (332)
T ss_dssp TTCCEEEEEEEECTTCCEEEEEEEEEEEECTTSCEEEEEEEEEEESSCCCHHHHH
T ss_pred cCCeeEEEEEEEcCCCCEEEEeeEEEEeEcCCCCEEEEEEEeccCchhhhhhhhc
Confidence 6667788999999999999999999999999999999999999999998776543
No 75
>2wkq_A NPH1-1, RAS-related C3 botulinum toxin substrate 1; transferase, cell adhesion, nucleotide-binding, protein engineering, RAS superfamily LOV2; HET: GTP FMN; 1.60A {Avena sativa} PDB: 2wkr_A* 2wkp_A*
Probab=99.24 E-value=5.1e-11 Score=132.14 Aligned_cols=119 Identities=13% Similarity=0.033 Sum_probs=101.8
Q ss_pred HHHHhcCccEEEEcC---CCcEEecCHHHHHHhCCCcchhcCCCccccccCCcHHHHHHHHHHHhcccceEEEEEEEccc
Q 002210 615 RLIETAAVPILAVDA---SGNVNGWNSKAAELTGLTVDQAIGTALVDLVAGDSVDVVKNMLSSAFLEERNVEIKLRAFGP 691 (953)
Q Consensus 615 ~lle~~~~~I~~~D~---dg~i~~~N~a~~~l~G~~~~eliG~~~~dl~~~~~~~~~~~~l~~~l~~~~~~e~~~~~~~~ 691 (953)
.++++++++|+++|. +|+|+++|+++++++||+.++++|+++.++.++++.......+...+..+.....+++. .
T Consensus 15 ~~~~~~~~~i~~~D~~~~~g~i~~~N~a~~~l~G~~~~el~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~e~~~--~ 92 (332)
T 2wkq_A 15 TTLERIEKNFVITDPRLPDNPIIFASDSFLQLTEYSREEILGRNARFLQGPETDRATVRKIRDAIDNQTEVTVQLIN--Y 92 (332)
T ss_dssp CCGGGCCSEEEEECTTSTTCCEEEECHHHHHHHCCCHHHHTTSCGGGGCCTTCCHHHHHHHHHHHHTTCCEEEEEEE--E
T ss_pred hHhhcCCCcEEEecCCCCCCCEEEeehHHHHHhCCCHHHHcCCCchhhcCCCCCHHHHHHHHHHHHcCCeeEEEEEE--E
Confidence 467899999999999 99999999999999999999999999998888776665666666666555555555444 5
Q ss_pred CCCCCEEEEEEEEEEeecCCCCEEEEEEEEEecchhHHHHHHHH
Q 002210 692 RETSGPVILVVNACCTQDTKENVIGVCFVGQDITGQKLVMDKYT 735 (953)
Q Consensus 692 ~~dG~~~~v~v~~~pi~d~~g~v~gvv~v~~DITerk~~E~~L~ 735 (953)
++||..+|+.++..|+++.+|.+.|++++++|||++|+.+++++
T Consensus 93 ~~dG~~~~~~~~~~pi~d~~g~~~~~v~~~~DITe~k~~e~~~~ 136 (332)
T 2wkq_A 93 TKSGKKFWNLFHLQPMRDQKGDVQYFIGVQLDGTEHVRDAAERE 136 (332)
T ss_dssp CTTCCEEEEEEEEEEEECTTSCEEEEEEEEEEESSCCCHHHHHH
T ss_pred cCCCCEEEEeeEEEEeEcCCCCEEEEEEEeccCchhhhhhhhcc
Confidence 67999999999999999999999999999999999998887764
No 76
>3mjq_A Uncharacterized protein; NESG, structural genomics, PSI-2, protein structure initiati northeast structural genomics consortium; 2.60A {Desulfitobacterium hafniense}
Probab=99.24 E-value=2.9e-11 Score=111.99 Aligned_cols=117 Identities=12% Similarity=0.161 Sum_probs=83.9
Q ss_pred HHHHhCCCCCCCCeEeecCCccEEehhHHHHHHhCCChhhhhcccccccccccccccccccCcchHHHHHHHHHHHhcCC
Q 002210 742 VGIVSSPSALIPPIFMTDEDGRCLEWNDGMEKLSGLKREEAIERMLIGEVFTVKNFGCRVKNHDTLTKLRIVMNKVISGQ 821 (953)
Q Consensus 742 ~~i~e~~~~li~~I~~~D~~G~i~~~N~a~~~l~G~~~eeliGk~~~~~~~~~~~~~~~l~~~~~~~~~~~~l~~~~~g~ 821 (953)
+.+++++++ +++++|.+|+++++|+++++++|++.++++|+++... ++. +....+...+.....++
T Consensus 2 ~~l~~~~~~---~i~~~d~~g~i~~~N~~~~~~~g~~~~~~~g~~~~~~-~~~----------~~~~~~~~~~~~~~~~~ 67 (126)
T 3mjq_A 2 KNFLETIED---MILIINREGRLLYANTAVPKKLGYTHEELMSMHILTI-TSA----------GKMAEGEKILAELFAGK 67 (126)
T ss_dssp CTTGGGCSS---EEEEEETTSBEEEECTHHHHHHSCCHHHHHHSBHHHH-HCT----------TCHHHHHHHHHHHHHTC
T ss_pred hhHHhhCCc---eEEEEeCCCcEEEEcHHHHHHHCCCHHHHcCCCHHHH-cCc----------hhHHHHHHHHHHHHhCC
Confidence 456778777 8999999999999999999999999999999987633 322 22223445555666665
Q ss_pred CcceEEEEEEccCCCEEEEEEEEEEeecCCCCEEEEEEEEEeccHHHHHHHHHH
Q 002210 822 DADKILFGFFDQQGKYVEALLSANKRTNAEGKISGILCFLHVASPELQYALQVQ 875 (953)
Q Consensus 822 ~~~~~e~~~~~kdG~~~~v~~s~~pi~d~~G~i~g~v~v~~DITerK~~e~elq 875 (953)
.. ..++++.+++|..+|+.++..|..+ +...+++++++|||++|+++.+.+
T Consensus 68 ~~-~~~~~~~~~~g~~~~~~~~~~~~~~--~~~~~~~~~~~DITe~k~a~~~~~ 118 (126)
T 3mjq_A 68 KE-SLPLSLEKKEGTSIPAKARIWQGKW--HNEPCLFAIIKDLSKEERASSPPF 118 (126)
T ss_dssp CS-EEEEEEECTTSCEEEEEEEEEEEES--SSSEEEEEEEEECC----------
T ss_pred Cc-eeEEEEEccCCCEEEEEEEEEeeeE--CCceEEEEEEEechHHHHhhcccc
Confidence 54 7788889999999999999987664 335678999999999998775543
No 77
>3mjq_A Uncharacterized protein; NESG, structural genomics, PSI-2, protein structure initiati northeast structural genomics consortium; 2.60A {Desulfitobacterium hafniense}
Probab=99.22 E-value=2.3e-11 Score=112.66 Aligned_cols=119 Identities=11% Similarity=0.122 Sum_probs=87.0
Q ss_pred HHHHHhcCccEEEEcCCCcEEecCHHHHHHhCCCcchhcCCCccccccCCcHHHHHHHHHHHhcccceEEEEEEEcccCC
Q 002210 614 VRLIETAAVPILAVDASGNVNGWNSKAAELTGLTVDQAIGTALVDLVAGDSVDVVKNMLSSAFLEERNVEIKLRAFGPRE 693 (953)
Q Consensus 614 ~~lle~~~~~I~~~D~dg~i~~~N~a~~~l~G~~~~eliG~~~~dl~~~~~~~~~~~~l~~~l~~~~~~e~~~~~~~~~~ 693 (953)
+.++++++++|+++|.+|+|+++|+++++++|++.++++|+++.+++++.+...+...+......... ..++.. .++
T Consensus 2 ~~l~~~~~~~i~~~d~~g~i~~~N~~~~~~~g~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~--~~~ 78 (126)
T 3mjq_A 2 KNFLETIEDMILIINREGRLLYANTAVPKKLGYTHEELMSMHILTITSAGKMAEGEKILAELFAGKKE-SLPLSL--EKK 78 (126)
T ss_dssp CTTGGGCSSEEEEEETTSBEEEECTHHHHHHSCCHHHHHHSBHHHHHCTTCHHHHHHHHHHHHHTCCS-EEEEEE--ECT
T ss_pred hhHHhhCCceEEEEeCCCcEEEEcHHHHHHHCCCHHHHcCCCHHHHcCchhHHHHHHHHHHHHhCCCc-eeEEEE--Ecc
Confidence 45789999999999999999999999999999999999999999999988888777777777633322 333333 345
Q ss_pred CCCEEEEEEEEEEeecCCCCEEEEEEEEEecchhHHHHHHHHHH
Q 002210 694 TSGPVILVVNACCTQDTKENVIGVCFVGQDITGQKLVMDKYTRI 737 (953)
Q Consensus 694 dG~~~~v~v~~~pi~d~~g~v~gvv~v~~DITerk~~E~~L~~s 737 (953)
+|..+|+.++..|... +...+++++++|||++|++++++..+
T Consensus 79 ~g~~~~~~~~~~~~~~--~~~~~~~~~~~DITe~k~a~~~~~~~ 120 (126)
T 3mjq_A 79 EGTSIPAKARIWQGKW--HNEPCLFAIIKDLSKEERASSPPFLE 120 (126)
T ss_dssp TSCEEEEEEEEEEEES--SSSEEEEEEEEECC------------
T ss_pred CCCEEEEEEEEEeeeE--CCceEEEEEEEechHHHHhhcccchh
Confidence 7999999988887664 34668899999999999999886654
No 78
>3vol_A Aerotaxis transducer AER2; heme, oxygen sensor protein, PAS, HAMP, cyanoMet, CN-bound, protein; HET: HEM; 2.40A {Pseudomonas aeruginosa}
Probab=99.22 E-value=9e-11 Score=123.55 Aligned_cols=120 Identities=13% Similarity=0.101 Sum_probs=89.9
Q ss_pred HHHHHHHhCCCCCCCCeEeecCCccEEehhHHHHHHh------------CCChhhhhcccccccccccccccccccCcch
Q 002210 739 GDYVGIVSSPSALIPPIFMTDEDGRCLEWNDGMEKLS------------GLKREEAIERMLIGEVFTVKNFGCRVKNHDT 806 (953)
Q Consensus 739 ~~~~~i~e~~~~li~~I~~~D~~G~i~~~N~a~~~l~------------G~~~eeliGk~~~~~~~~~~~~~~~l~~~~~ 806 (953)
.+++.++++++. +|+++|.+|+|+|+|+++++++ ||++++++|+++. .+++. +..
T Consensus 22 ~~l~~iLd~~~~---~vii~D~~g~I~~~N~a~~~ll~~~~~~~~~~l~G~~~~eliG~~~~-~~~~~---------~~~ 88 (233)
T 3vol_A 22 ARIKSALDNVSA---NVMIADNDLNIIYMNRTVSEMLGRAEADIRKQLPNFDAGRLMGANID-VFHKN---------PAH 88 (233)
T ss_dssp HHHHHHHTTSSS---EEEEEETTSBEEEECHHHHHHHHHTHHHHHTTCTTCCTTSCTTCBGG-GGSSS---------HHH
T ss_pred HHHHHHHhcCCC---cEEEECCCCcEEEecHHHHHHHHHHHHHHHhhcCCCCHHHHcCCCHH-HHcCC---------HHH
Confidence 467789999877 9999999999999999999998 8999999999874 33332 111
Q ss_pred HHHHHHHHHHHhcCCCcceEEEEEEccCCCEEEEEEEEEEeecCCCCEEEEEEEEEeccHHHHHHHHHHHHHHHHH
Q 002210 807 LTKLRIVMNKVISGQDADKILFGFFDQQGKYVEALLSANKRTNAEGKISGILCFLHVASPELQYALQVQRISEQAA 882 (953)
Q Consensus 807 ~~~~~~~l~~~~~g~~~~~~e~~~~~kdG~~~~v~~s~~pi~d~~G~i~g~v~v~~DITerK~~e~elq~~ae~~~ 882 (953)
...+.....+ .+..+ + ..+|. |+.++..|++|.+|++.|++++++|||++++.+.++++..++..
T Consensus 89 ----~~~~~~~~~~--~~~~~--~-~~~g~--~~~~~~~Pi~d~~G~~~g~v~~~~DITe~~~~e~ei~~l~~a~~ 153 (233)
T 3vol_A 89 ----QRHLLANLTG--VHKAE--L-NLGGR--RFSLDVVPVFNDANERLGSAVQWTDRTEEHRAEQEVSQLVQAAA 153 (233)
T ss_dssp ----HHHHHHTCCS--CEEEE--E-EETTE--EEEEEEEEEECTTCCEEEEEEEEEECHHHHHHHHHHHHHHHHHH
T ss_pred ----HHHHHHhccc--ceeEE--E-EECCE--EEEEEEEEEECCCCCEEEEEEEEehhhHHHHHHHHHHHHHHHHh
Confidence 1112222222 22333 2 23554 67899999999999999999999999999999988877666543
No 79
>3bwl_A Sensor protein; structural genomics, APC87707.1, PAS domain, HTR-like protei protein structure initiative; HET: MSE I3A; 1.73A {Haloarcula marismortui atcc 43049}
Probab=99.21 E-value=1.5e-10 Score=107.81 Aligned_cols=118 Identities=16% Similarity=0.126 Sum_probs=86.7
Q ss_pred ccHHHHHHHHHHHHHHHHhcCccEEEEcCCCcEEecCHHHHHHhCCCcchh--cCCCccccccCCcHHHHHHHHHHHhcc
Q 002210 601 EKIDELRIITNEMVRLIETAAVPILAVDASGNVNGWNSKAAELTGLTVDQA--IGTALVDLVAGDSVDVVKNMLSSAFLE 678 (953)
Q Consensus 601 ~~~~eL~~~~~~l~~lle~~~~~I~~~D~dg~i~~~N~a~~~l~G~~~~el--iG~~~~dl~~~~~~~~~~~~l~~~l~~ 678 (953)
+.+++|++++++|+.+++++|++|+++|.+|+|+++|+++++++||+.+++ +|+++.++++ +...+...+.....
T Consensus 7 ~~e~~L~~~~~~~~~l~e~~~~~i~~~d~~g~i~~~N~a~~~~~G~~~~el~g~g~~~~~~~~--~~~~~~~~~~~~~~- 83 (126)
T 3bwl_A 7 RREKRLEETSSRLEALFENSPDMIDVLDADGTICEVNQRFCAELGYDESEVLGRSIWEFDLMF--DAEDVQTQLSGFSV- 83 (126)
T ss_dssp HHHHHHHHHHHHHHHHHHHCSSEEEEECTTCBEEEECHHHHHHHTCCGGGTTTSBGGGTBTTC--CHHHHHHHHHTCCT-
T ss_pred HHHHHHHHHHHHHHHHHhhCCcEEEEEcCCCCEEEEcHHHHHHhCCCHHHHhhCCCchhhccC--CHHHHHHHHHHHhc-
Confidence 356778899999999999999999999999999999999999999999999 5677777776 33333333322221
Q ss_pred cceEEEEEEEcccCCCCCEEEEEEEEEEeecCCCCEEEEEEEEEecc
Q 002210 679 ERNVEIKLRAFGPRETSGPVILVVNACCTQDTKENVIGVCFVGQDIT 725 (953)
Q Consensus 679 ~~~~e~~~~~~~~~~dG~~~~v~v~~~pi~d~~g~v~gvv~v~~DIT 725 (953)
.....++.. ..++||..+|+.++..++.+ +|.. +++++++|||
T Consensus 84 ~~~~~~e~~--~~~~dG~~~~~~~~~~~~~~-~~~~-~~~~~~~DIT 126 (126)
T 3bwl_A 84 DERRKFEGL--YERRDGSTMSVEVHLLRFNL-EGED-RFLAISRDIT 126 (126)
T ss_dssp TCEEEEEEE--EECTTSCEEEEEEEEEEEEE-TTEE-EEEEEEEEC-
T ss_pred CCCcceEEE--EEeCCCCEEEEEEEeEEEec-CCcE-EEEEEEEeCC
Confidence 122223322 24679999999988888754 4443 5678889998
No 80
>2kdk_A ARYL hydrocarbon receptor nuclear translocator-LI 2; circadian clock, PAS domain, transcription, activator, biolo rhythms, DNA-binding, nucleus; NMR {Homo sapiens}
Probab=99.21 E-value=7.1e-11 Score=109.26 Aligned_cols=111 Identities=11% Similarity=0.103 Sum_probs=93.3
Q ss_pred HHHhcCccEEEEcCCCcEEecCHHHHHHhCCCcchhcCCCccccccCCcHHHHHHHHHHHhcc-cceEEEEEEEcccCCC
Q 002210 616 LIETAAVPILAVDASGNVNGWNSKAAELTGLTVDQAIGTALVDLVAGDSVDVVKNMLSSAFLE-ERNVEIKLRAFGPRET 694 (953)
Q Consensus 616 lle~~~~~I~~~D~dg~i~~~N~a~~~l~G~~~~eliG~~~~dl~~~~~~~~~~~~l~~~l~~-~~~~e~~~~~~~~~~d 694 (953)
++++++++|+.+|.+|+++++|+++++++||+.++++|+++.+++++++.+.+...+...+.. ......+++. .++|
T Consensus 8 ~~~~~~~~i~~~d~~g~i~~~N~~~~~~~G~~~~el~g~~~~~~~~p~d~~~~~~~~~~~~~~~~~~~~~e~r~--~~~d 85 (121)
T 2kdk_A 8 INVKPTEFITRFAVNGKFVYVDQRATAILGYLPQELLGTSCYEYFHQDDHNNLTDKHKAVLQSKEKILTDSYKF--RAKD 85 (121)
T ss_dssp CCCCSSEEEEEECTTSBEEEECTHHHHHTCCCTTTSBTSBTTTTBCSSSHHHHHHHHHHHHTSSSCEEEEEEEE--ECSS
T ss_pred cccCCccEEEEECCCeeEEEEChhHHHHHCCCHHHHcCCcHHHeeCHHHHHHHHHHHHHHHhCCCCCccEEEEE--EEcC
Confidence 567899999999999999999999999999999999999999999999988877777776643 3334444444 5679
Q ss_pred CCEEEEEEEEEEeecCC-CCEEEEEEEEEecchhH
Q 002210 695 SGPVILVVNACCTQDTK-ENVIGVCFVGQDITGQK 728 (953)
Q Consensus 695 G~~~~v~v~~~pi~d~~-g~v~gvv~v~~DITerk 728 (953)
|..+|+.++..|+++.. +.+.+++++.+||++.+
T Consensus 86 G~~~~~~~~~~~~~d~~~~~~~~~v~~~~~i~~~~ 120 (121)
T 2kdk_A 86 GSFVTLKSQWFSFTNPDTKELEYIVSVNTLVLGHS 120 (121)
T ss_dssp SCEEEEEEEEEEEECCSSSCEEEEEEEEECCSSCC
T ss_pred CCEEEEEEEEEEEECCCCCeeeEEEEEEEeccccC
Confidence 99999999999999875 56777889999998864
No 81
>3kx0_X Uncharacterized protein RV1364C/MT1410; PAS domain, sensory domain, mycobacteium tuberculos molecule binding domain; 2.30A {Mycobacterium tuberculosis}
Probab=99.20 E-value=1.6e-11 Score=123.98 Aligned_cols=123 Identities=13% Similarity=0.115 Sum_probs=89.1
Q ss_pred HHHHHHHHHHHhCCCCCCCCeEeec-CCccEEehhHHHHHHhCCChhhhhcccccccccccccccccccCcchHHHHHHH
Q 002210 735 TRIQGDYVGIVSSPSALIPPIFMTD-EDGRCLEWNDGMEKLSGLKREEAIERMLIGEVFTVKNFGCRVKNHDTLTKLRIV 813 (953)
Q Consensus 735 ~~se~~~~~i~e~~~~li~~I~~~D-~~G~i~~~N~a~~~l~G~~~eeliGk~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 813 (953)
.+.+++|+.+++++++ +|+++| .+|+++++|+++++++|++ +++|+++.+ +++.... .. +...
T Consensus 33 ~~~~~~l~~l~~~~~~---~i~~~d~~~g~i~~~N~a~~~l~G~~--~~~G~~~~~-~~~~~~~------~~----~~~~ 96 (185)
T 3kx0_X 33 VGAAEDVRRIFEHIPA---ILVGLEGPDHRFVAVNAAYRGFSPLL--DTVGQPARE-VYPELEG------QQ----IYEM 96 (185)
T ss_dssp TCCHHHHHHHHHHCSS---EEEEEETTTTEEEEECHHHHHHCCCC--SCTTSBHHH-HCTTSCS------SS----SHHH
T ss_pred hhhHHHHHHHHhcCCc---eEEEEECCCcEEEEEcHHHHHHcCCc--cccCCcHHH-HCCchhh------hh----HHHH
Confidence 3456689999999987 899999 9999999999999999999 899998763 4443211 11 1223
Q ss_pred HHHHh-cCCCcceEEEEE--EccC--CCEEEEEEEEEEeecCCCCEEEEEEEEEeccHHHHHHHH
Q 002210 814 MNKVI-SGQDADKILFGF--FDQQ--GKYVEALLSANKRTNAEGKISGILCFLHVASPELQYALQ 873 (953)
Q Consensus 814 l~~~~-~g~~~~~~e~~~--~~kd--G~~~~v~~s~~pi~d~~G~i~g~v~v~~DITerK~~e~e 873 (953)
+...+ .|......++.+ .+++ |..+|+.++..|+.|.+|.+.|++++++|||++|+++.+
T Consensus 97 ~~~~~~~g~~~~~~~~~~~~~~~~~gg~~~~~~~~~~pi~~~~g~~~g~~~~~~DITerk~~e~~ 161 (185)
T 3kx0_X 97 LDRVYQTGEPQSGSEWRLQTDYDGSGVEERYFDFVVTPRRRADGSIEGVQLIVDDVTSRVRARQA 161 (185)
T ss_dssp HHHHHHHCCCEEEEEEEEC--------CCEEEEEEEEEEECTTSCEEEEEEEEEECHHHHTTCC-
T ss_pred HHHHHHcCCcccccceeEEeeccCCCCccEEEEEEEEEEECCCCCEEEEEEEEEeCCHHHHHHHH
Confidence 44444 333322222333 2323 778999999999999999999999999999999988765
No 82
>2kdk_A ARYL hydrocarbon receptor nuclear translocator-LI 2; circadian clock, PAS domain, transcription, activator, biolo rhythms, DNA-binding, nucleus; NMR {Homo sapiens}
Probab=99.20 E-value=8.7e-11 Score=108.65 Aligned_cols=110 Identities=14% Similarity=0.101 Sum_probs=86.6
Q ss_pred HHhCCCCCCCCeEeecCCccEEehhHHHHHHhCCChhhhhcccccccccccccccccccCcchHHHHHHHHHHHhcC-CC
Q 002210 744 IVSSPSALIPPIFMTDEDGRCLEWNDGMEKLSGLKREEAIERMLIGEVFTVKNFGCRVKNHDTLTKLRIVMNKVISG-QD 822 (953)
Q Consensus 744 i~e~~~~li~~I~~~D~~G~i~~~N~a~~~l~G~~~eeliGk~~~~~~~~~~~~~~~l~~~~~~~~~~~~l~~~~~g-~~ 822 (953)
+++++++ +|+..|.+|+++++|+++++++||++++++|+.+...+++ +....+...+...+.+ +.
T Consensus 8 ~~~~~~~---~i~~~d~~g~i~~~N~~~~~~~G~~~~el~g~~~~~~~~p-----------~d~~~~~~~~~~~~~~~~~ 73 (121)
T 2kdk_A 8 INVKPTE---FITRFAVNGKFVYVDQRATAILGYLPQELLGTSCYEYFHQ-----------DDHNNLTDKHKAVLQSKEK 73 (121)
T ss_dssp CCCCSSE---EEEEECTTSBEEEECTHHHHHTCCCTTTSBTSBTTTTBCS-----------SSHHHHHHHHHHHHTSSSC
T ss_pred cccCCcc---EEEEECCCeeEEEEChhHHHHHCCCHHHHcCCcHHHeeCH-----------HHHHHHHHHHHHHHhCCCC
Confidence 4556655 7999999999999999999999999999999987644333 2333344555555554 44
Q ss_pred cceEEEEEEccCCCEEEEEEEEEEeecCC-CCEEEEEEEEEeccHH
Q 002210 823 ADKILFGFFDQQGKYVEALLSANKRTNAE-GKISGILCFLHVASPE 867 (953)
Q Consensus 823 ~~~~e~~~~~kdG~~~~v~~s~~pi~d~~-G~i~g~v~v~~DITer 867 (953)
....+++++++||+++|+..+..|++|.+ |.+.+++++.+|||+.
T Consensus 74 ~~~~e~r~~~~dG~~~~~~~~~~~~~d~~~~~~~~~v~~~~~i~~~ 119 (121)
T 2kdk_A 74 ILTDSYKFRAKDGSFVTLKSQWFSFTNPDTKELEYIVSVNTLVLGH 119 (121)
T ss_dssp EEEEEEEEECSSSCEEEEEEEEEEEECCSSSCEEEEEEEEECCSSC
T ss_pred CccEEEEEEEcCCCEEEEEEEEEEEECCCCCeeeEEEEEEEecccc
Confidence 45788999999999999999999999886 5667788999999864
No 83
>3vol_A Aerotaxis transducer AER2; heme, oxygen sensor protein, PAS, HAMP, cyanoMet, CN-bound, protein; HET: HEM; 2.40A {Pseudomonas aeruginosa}
Probab=99.20 E-value=2.2e-10 Score=120.62 Aligned_cols=153 Identities=8% Similarity=0.086 Sum_probs=92.9
Q ss_pred HHHHHHHHHHHhcCccEEEEcCCCcEEecCHHHHHHh------------CCCcchhcCCCccccccCCcHHHHHHHHHHH
Q 002210 608 IITNEMVRLIETAAVPILAVDASGNVNGWNSKAAELT------------GLTVDQAIGTALVDLVAGDSVDVVKNMLSSA 675 (953)
Q Consensus 608 ~~~~~l~~lle~~~~~I~~~D~dg~i~~~N~a~~~l~------------G~~~~eliG~~~~dl~~~~~~~~~~~~l~~~ 675 (953)
+...++..++++++++|+++|.+|+|+++|++++++| ||+.++++|+++.++.+.. ......+. .
T Consensus 19 ~e~~~l~~iLd~~~~~vii~D~~g~I~~~N~a~~~ll~~~~~~~~~~l~G~~~~eliG~~~~~~~~~~--~~~~~~~~-~ 95 (233)
T 3vol_A 19 SHMARIKSALDNVSANVMIADNDLNIIYMNRTVSEMLGRAEADIRKQLPNFDAGRLMGANIDVFHKNP--AHQRHLLA-N 95 (233)
T ss_dssp THHHHHHHHHTTSSSEEEEEETTSBEEEECHHHHHHHHHTHHHHHTTCTTCCTTSCTTCBGGGGSSSH--HHHHHHHH-T
T ss_pred HHHHHHHHHHhcCCCcEEEECCCCcEEEecHHHHHHHHHHHHHHHhhcCCCCHHHHcCCCHHHHcCCH--HHHHHHHH-h
Confidence 3446678899999999999999999999999999999 8999999999998876532 11122222 2
Q ss_pred hcccceEEEEEEEcccCCCCCEEEEEEEEEEeecCCCCEEEEEEEEEecchhHHHHHHHHHHHHHHHHHHhCCCCCCCCe
Q 002210 676 FLEERNVEIKLRAFGPRETSGPVILVVNACCTQDTKENVIGVCFVGQDITGQKLVMDKYTRIQGDYVGIVSSPSALIPPI 755 (953)
Q Consensus 676 l~~~~~~e~~~~~~~~~~dG~~~~v~v~~~pi~d~~g~v~gvv~v~~DITerk~~E~~L~~se~~~~~i~e~~~~li~~I 755 (953)
+.. .+..++.. +| .|+.++..|++|.+|++.|++++++|||+++++|++++..... +.. +
T Consensus 96 ~~~--~~~~~~~~-----~g--~~~~~~~~Pi~d~~G~~~g~v~~~~DITe~~~~e~ei~~l~~a---~~~-------g- 155 (233)
T 3vol_A 96 LTG--VHKAELNL-----GG--RRFSLDVVPVFNDANERLGSAVQWTDRTEEHRAEQEVSQLVQA---AAA-------G- 155 (233)
T ss_dssp CCS--CEEEEEEE-----TT--EEEEEEEEEEECTTCCEEEEEEEEEECHHHHHHHHHHHHHHHH---HHC-------C-
T ss_pred ccc--ceeEEEEE-----CC--EEEEEEEEEEECCCCCEEEEEEEEehhhHHHHHHHHHHHHHHH---HhC-------C-
Confidence 222 23333332 23 3678899999999999999999999999999999887654322 221 1
Q ss_pred EeecCCccEE-ehhHHHHHHhCCChhhhhccc
Q 002210 756 FMTDEDGRCL-EWNDGMEKLSGLKREEAIERM 786 (953)
Q Consensus 756 ~~~D~~G~i~-~~N~a~~~l~G~~~eeliGk~ 786 (953)
|..+++. ..|..+..-+|+...++++..
T Consensus 156 ---dl~~ri~~~~~~~~~~~l~~~ln~l~~~~ 184 (233)
T 3vol_A 156 ---DFSKRVEEAGKEGFFLRLAKDLNSLVDTA 184 (233)
T ss_dssp --------------------------------
T ss_pred ---cccccccccccchHHHHHHHHHHHHHHHH
Confidence 3356665 467777777777777776653
No 84
>1v9y_A Heme PAS sensor protein; signaling protein; HET: HEM; 1.32A {Escherichia coli} SCOP: d.110.3.2 PDB: 1v9z_A* 1vb6_A* 1s67_L* 1s66_L*
Probab=99.19 E-value=5.1e-11 Score=116.29 Aligned_cols=130 Identities=11% Similarity=0.092 Sum_probs=84.3
Q ss_pred HHHHHHHHHHHHHHHHhcCccEEEEcCCCcEEecCHHHHHHhCCCcchhcCCCccccccCCcHHHHHHHHHHHhcccce-
Q 002210 603 IDELRIITNEMVRLIETAAVPILAVDASGNVNGWNSKAAELTGLTVDQAIGTALVDLVAGDSVDVVKNMLSSAFLEERN- 681 (953)
Q Consensus 603 ~~eL~~~~~~l~~lle~~~~~I~~~D~dg~i~~~N~a~~~l~G~~~~eliG~~~~dl~~~~~~~~~~~~l~~~l~~~~~- 681 (953)
.+++.+.+..+..+++.++++++++|.+|+|+++|+++++++|++.++++|+++.+++++.........+.........
T Consensus 32 ~~~~~~~~~~~~~~l~~~~~~i~~~d~~g~i~~~N~~~~~l~g~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 111 (167)
T 1v9y_A 32 TDADNAADGIFFPALEQNMMGAVLINENDEVMFFNPAAEKLWGYKREEVIGNNIDMLIPRDLRPAHPEYIRHNREGGKAR 111 (167)
T ss_dssp --------CCHHHHHHTCSSEEEEECTTSBEEEECHHHHHHHSCCGGGTTTSBGGGGSCGGGTTTHHHHHHHHHC-----
T ss_pred HHHHhhhhHHHHHHHHhCCCCEEEECCCCcEEEECHHHHHHhCCCHHHHcCCChhhccCccccchHHHHHHHHhhcCCCc
Confidence 4456666778899999999999999999999999999999999999999999999888877655555555555533221
Q ss_pred ---EEEEEEEcccCCCCCEEEEEEEEEEeecCCCCEEEEEEEEEecchhHHHHHHHHH
Q 002210 682 ---VEIKLRAFGPRETSGPVILVVNACCTQDTKENVIGVCFVGQDITGQKLVMDKYTR 736 (953)
Q Consensus 682 ---~e~~~~~~~~~~dG~~~~v~v~~~pi~d~~g~v~gvv~v~~DITerk~~E~~L~~ 736 (953)
...+... ..++|..+|+.++..|+. .+|.+ +++++++|||++|++++++++
T Consensus 112 ~~~~~~~~~~--~~~~g~~~~~~~~~~~~~-~~g~~-~~~~~~~DiT~~~~~e~~l~~ 165 (167)
T 1v9y_A 112 VEGMSRELQL--EKKDGSKIWTRFALSKVS-AEGKV-YYLALVRDASVEMAQKEQTRQ 165 (167)
T ss_dssp -----CEEEE--ECTTSCEEEEEEEEEEEE-ETTEE-EEEEEEEC-------------
T ss_pred ccccceEEEE--EcCCCcEEEEEEEEEEEe-cCCCE-EEEEEEecCcHHHHHHHHHHh
Confidence 2222222 345799999999999994 35655 488999999999999887764
No 85
>3p01_A Two-component response regulator; PSI-2, midwest center for structural genomics, protein struc initiative, MCSG, signali protein; 2.65A {Nostoc SP}
Probab=99.19 E-value=3.4e-10 Score=114.18 Aligned_cols=151 Identities=8% Similarity=0.105 Sum_probs=113.2
Q ss_pred HHHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHhhhCCCeEEEEeecCCCCceEE-EeecCCCCCCccCCCCCCCCccHH
Q 002210 196 KSYKLAAKAISRLQSLPSGNISLLCDVLVNEVSDLTGYDRVMVYKFHEDEHGEVV-AECRRPDLEPYLGFHYPATDIPQA 274 (953)
Q Consensus 196 ~~~~~~~~~~~~l~~~~~~~~~~l~~~~v~~vr~~~g~DRVmiY~F~~d~~G~vi-aE~~~~~~~~~lg~~~pa~dip~~ 274 (953)
+..+++.++...|.+ +.+++++++.+++.+++++|+||+.||.+++| ....+ ++...++. .+..+|. ..-
T Consensus 27 ~~~~~L~~is~~l~~--~~dl~~il~~i~~~l~~~l~~d~~~i~l~~~~-~~~~~~~~~~~~~~---~~~~~~~---~~~ 97 (184)
T 3p01_A 27 AQMSLLTVLVQVTQA--SNSLEAILTPIATAFAESFAVNACILQMLEGQ-TLSTIQGFYSQQGT---VNNWLNQ---DPL 97 (184)
T ss_dssp HHHHHHHHHHHHHHH--CSSSHHHHHHHHHHHHHHHTCSEEEEEEEETT-EEEEEEEEEESSSS---CCCCGGG---CHH
T ss_pred HHHHHHHHHHHHHHh--cCCHHHHHHHHHHHHHHHhCCCeEEEEEecCC-ceeeeeeeccccCc---cCcccCC---CcH
Confidence 345666777777888 77999999999999999999999999999443 33322 23444433 2333442 234
Q ss_pred HHHHHHhCCceEeecCCCCCceeeeCCCCCCccccCCccccCCChhHHHHhhhcCCeeEEEEEEEEeCCcccccccccCC
Q 002210 275 SRFLIMKNKVRMICDCLAPPVKVIQDKKLDQPLSLCGSTLRAPHGCHARYMENMGSIASLVMSVTINEAEDELDNDQEQG 354 (953)
Q Consensus 275 ar~ly~~n~~r~i~D~~~~~~~l~~~~~~~~~ldl~~s~lr~~s~~h~~yl~nmgv~asl~~~i~~~~~~~~~~~~~~~~ 354 (953)
....+..++.-+|.|+...| . -++.++++..|++|.|++||+.+
T Consensus 98 ~~~~~~~~~~~~i~d~~~~~-~----------------------~~~~~~~~~~~~~s~l~vPL~~~------------- 141 (184)
T 3p01_A 98 TNEAIATGQIQVAANIAKDP-K----------------------LASISQYQDNGIQSHVVIPITYR------------- 141 (184)
T ss_dssp HHHHHHHCSCEEESCGGGCH-H----------------------HHTCHHHHHHTCCEEEEEEEEET-------------
T ss_pred HHHHHhhCCeEEEeccccCc-c----------------------ccchhHHHHhCccEEEEEEEEEC-------------
Confidence 55667788888888854433 1 11245678899999999999987
Q ss_pred CceeEEEeeecCCCCCCChhHHHHHHHHHHHHHHhhH
Q 002210 355 RKLWGLVVCHHTSPRFVPFPLRYACEFLIQVFGVQVN 391 (953)
Q Consensus 355 ~~LWGLi~~hh~~pr~~~~~~r~~~~~l~~~~~~~l~ 391 (953)
|++||+|.+|+..|+.|+......++.++.++++.|.
T Consensus 142 ~~~~GvL~l~~~~~~~f~~~d~~ll~~lA~q~aiAi~ 178 (184)
T 3p01_A 142 NEMLGVLSLQWQQPISLREDELTLIHLSAQLVAIALT 178 (184)
T ss_dssp TEEEEEEEEEESSCCCCCHHHHHHHHHHHHHHHHHHH
T ss_pred CEEEEEEEeCcCCCCCCCHHHHHHHHHHHHHHHHHHH
Confidence 9999999997778999999999999999998887774
No 86
>3olo_A Two-component sensor histidine kinase; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG, TRA; 2.09A {Nostoc SP}
Probab=99.17 E-value=1e-10 Score=107.00 Aligned_cols=111 Identities=12% Similarity=0.029 Sum_probs=83.2
Q ss_pred HHHHHHHHHHHHhCCCCCCCCeEeecCCccEEehhHHHHHHhCCChhhhhcccccccccccccccccccCcchHHHHHHH
Q 002210 734 YTRIQGDYVGIVSSPSALIPPIFMTDEDGRCLEWNDGMEKLSGLKREEAIERMLIGEVFTVKNFGCRVKNHDTLTKLRIV 813 (953)
Q Consensus 734 L~~se~~~~~i~e~~~~li~~I~~~D~~G~i~~~N~a~~~l~G~~~eeliGk~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 813 (953)
+++..+.++.+++++++ +|+++|.+|+++++|+++++++||++++++|+++.+ +++... ..... .
T Consensus 8 ~e~~~~~~~~~~~~~~~---~i~~~d~~g~i~~~N~~~~~l~G~~~~el~g~~~~~-~~~~~~-------~~~~~----~ 72 (118)
T 3olo_A 8 SELEFKFAHYLINNAVE---ASFCLGDNWQFLYVNDATCRMTEYSREQLLSMNLQD-IDVDFA-------LHDWE----E 72 (118)
T ss_dssp HHHHHHHHHHHHHHCSS---EEEEECTTSBEEEECHHHHHHHCCCHHHHTTCBGGG-TBTTGG-------GSCHH----H
T ss_pred HHHHHHHHHHHHhcCCc---eEEEECCCCcEEEEHHHHHHHHCCCHHHHhCCChhh-cccccC-------HHHHH----H
Confidence 34445567789999987 899999999999999999999999999999998753 333311 11111 1
Q ss_pred HHHHhcCCCcceEEEEEEccCCCEEEEEEEEEEeecCCCCEEEEEEEEEecc
Q 002210 814 MNKVISGQDADKILFGFFDQQGKYVEALLSANKRTNAEGKISGILCFLHVAS 865 (953)
Q Consensus 814 l~~~~~g~~~~~~e~~~~~kdG~~~~v~~s~~pi~d~~G~i~g~v~v~~DIT 865 (953)
+. . +....+++++.+++|+.+|+.++..|+.+.++ .+++++++|||
T Consensus 73 ~~---~-~~~~~~e~~~~~~~g~~~~~~~~~~~~~~~~~--~~~~~~~~DIT 118 (118)
T 3olo_A 73 IR---Q-KNNYTFKTRYRSQSGRIFLVEMSLTFLEDQER--RFSCVFVREKS 118 (118)
T ss_dssp HH---H-HSEEEEEEEEECTTCCEEEEEEEEEEEEETTE--EEEEEEEEEC-
T ss_pred HH---h-cCcEEEEEEEEccCCCEEEEEEEEEEEEECCc--cEEEEEEEeCC
Confidence 11 1 23456788899999999999999999876543 35778999998
No 87
>3olo_A Two-component sensor histidine kinase; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG, TRA; 2.09A {Nostoc SP}
Probab=99.14 E-value=2.8e-10 Score=103.99 Aligned_cols=111 Identities=13% Similarity=0.084 Sum_probs=82.9
Q ss_pred HHHHHHHHHHHHHhcCccEEEEcCCCcEEecCHHHHHHhCCCcchhcCCCccccccCCcHHHHHHHHHHHhcccceEEEE
Q 002210 606 LRIITNEMVRLIETAAVPILAVDASGNVNGWNSKAAELTGLTVDQAIGTALVDLVAGDSVDVVKNMLSSAFLEERNVEIK 685 (953)
Q Consensus 606 L~~~~~~l~~lle~~~~~I~~~D~dg~i~~~N~a~~~l~G~~~~eliG~~~~dl~~~~~~~~~~~~l~~~l~~~~~~e~~ 685 (953)
+++..+.++.++++++++|+++|.+|+|+++|+++++++||+.++++|+++.++.++..... +.... ......++
T Consensus 8 ~e~~~~~~~~~~~~~~~~i~~~d~~g~i~~~N~~~~~l~G~~~~el~g~~~~~~~~~~~~~~----~~~~~-~~~~~~~e 82 (118)
T 3olo_A 8 SELEFKFAHYLINNAVEASFCLGDNWQFLYVNDATCRMTEYSREQLLSMNLQDIDVDFALHD----WEEIR-QKNNYTFK 82 (118)
T ss_dssp HHHHHHHHHHHHHHCSSEEEEECTTSBEEEECHHHHHHHCCCHHHHTTCBGGGTBTTGGGSC----HHHHH-HHSEEEEE
T ss_pred HHHHHHHHHHHHhcCCceEEEECCCCcEEEEHHHHHHHHCCCHHHHhCCChhhcccccCHHH----HHHHH-hcCcEEEE
Confidence 34445567789999999999999999999999999999999999999999998876544332 22222 12233333
Q ss_pred EEEcccCCCCCEEEEEEEEEEeecCCCCEEEEEEEEEecc
Q 002210 686 LRAFGPRETSGPVILVVNACCTQDTKENVIGVCFVGQDIT 725 (953)
Q Consensus 686 ~~~~~~~~dG~~~~v~v~~~pi~d~~g~v~gvv~v~~DIT 725 (953)
... .+++|..+|+.++..|+.+. | ..+++++++|||
T Consensus 83 ~~~--~~~~g~~~~~~~~~~~~~~~-~-~~~~~~~~~DIT 118 (118)
T 3olo_A 83 TRY--RSQSGRIFLVEMSLTFLEDQ-E-RRFSCVFVREKS 118 (118)
T ss_dssp EEE--ECTTCCEEEEEEEEEEEEET-T-EEEEEEEEEEC-
T ss_pred EEE--EccCCCEEEEEEEEEEEEEC-C-ccEEEEEEEeCC
Confidence 333 56689999999999998763 3 346678899997
No 88
>4eho_A Bacteriophytochrome, PAS/PAC sensor; photoreceptor, bacteriopbhytochrome; HET: MSE BLA; 2.90A {Rhodopseudomonas palustris tie-1}
Probab=99.13 E-value=5.3e-12 Score=152.27 Aligned_cols=118 Identities=16% Similarity=0.126 Sum_probs=94.9
Q ss_pred HHHHHHHhCCCCCCCCeEeecCCccEEehhHHHHHHhCCChhhhhcccccccccccccccccccCcchHHHHHHHHHHHh
Q 002210 739 GDYVGIVSSPSALIPPIFMTDEDGRCLEWNDGMEKLSGLKREEAIERMLIGEVFTVKNFGCRVKNHDTLTKLRIVMNKVI 818 (953)
Q Consensus 739 ~~~~~i~e~~~~li~~I~~~D~~G~i~~~N~a~~~l~G~~~eeliGk~~~~~~~~~~~~~~~l~~~~~~~~~~~~l~~~~ 818 (953)
.++..+++++++ +|+++|.+|+|++||+++++++||+.++++|+.....++++ ....+........
T Consensus 518 ~~~~~lle~a~~---~i~~~D~~grI~~~N~a~~~l~G~s~~e~~g~~~l~~~~~~-----------~~~~~~~i~~~l~ 583 (635)
T 4eho_A 518 PQASSQVHASMQ---PVLITDAEGRILLMNDSFRDMLPAGSPSAVHLDDLAGFFVE-----------SNDFLRNVAELID 583 (635)
T ss_dssp SSHHHHHHHCSS---CCEEEETTCCEEEECHHHHTTSCSSCCCCCSSGGGTTSSSS-----------CTHHHHHHHHHHH
T ss_pred HHHHHHHHhCCC---cEEEECCCCeEeeHHHHHHHHHCcChHHHcCcchhhccCCC-----------CHHHHHHHHHHHH
Confidence 356778888876 89999999999999999999999999999999765333332 1122333333333
Q ss_pred cCCCcceEEEEEEccCCCEEEEEEEEEEeecCCCCEEEEEEEEEeccHHHHHH
Q 002210 819 SGQDADKILFGFFDQQGKYVEALLSANKRTNAEGKISGILCFLHVASPELQYA 871 (953)
Q Consensus 819 ~g~~~~~~e~~~~~kdG~~~~v~~s~~pi~d~~G~i~g~v~v~~DITerK~~e 871 (953)
. +..+..|++++++||+.+|+.+++.|++|.+|+++|++++++|||++|++|
T Consensus 584 ~-g~~~~~E~~~~~~dG~~~~~~~~~~pv~d~~G~v~g~v~i~~DITerK~aE 635 (635)
T 4eho_A 584 H-GRGWRGEVLLRGAGNRPLPLAVRADPVTRTEDQSLGFVLIFSDATDRRTAD 635 (635)
T ss_dssp H-CCCBCCCCEECCSSSSCEECCCCEEEECSTTSSCCEEEECCCCCSSSCCCC
T ss_pred c-CCcEEEEEEEEccCCcEEEEEEEEEEEECCCCCEEEEEEEEEeCchHhhCC
Confidence 3 445678889999999999999999999999999999999999999998643
No 89
>1byw_A Protein (human ERG potassium channel); PAS domain, potassium channel domain, membrane protein; 2.60A {Homo sapiens} SCOP: d.110.3.6
Probab=99.07 E-value=8.7e-10 Score=97.87 Aligned_cols=104 Identities=16% Similarity=0.284 Sum_probs=81.7
Q ss_pred CeEeecC---CccEEehhHHHHHHhCCChhhhhccc-ccccccccccccccccCcchHHHHHHHHHHHhcCCCcceEEEE
Q 002210 754 PIFMTDE---DGRCLEWNDGMEKLSGLKREEAIERM-LIGEVFTVKNFGCRVKNHDTLTKLRIVMNKVISGQDADKILFG 829 (953)
Q Consensus 754 ~I~~~D~---~G~i~~~N~a~~~l~G~~~eeliGk~-~~~~~~~~~~~~~~l~~~~~~~~~~~~l~~~~~g~~~~~~e~~ 829 (953)
+++++|. +|+|+++|+++++++|++.++++|+. +...+.+.. ....+...+...+.++.....++.
T Consensus 3 ~i~i~d~~~~~g~i~~~N~~~~~~~g~~~~~~~g~~~~~~~~~~~~----------~~~~~~~~~~~~~~~~~~~~~~~~ 72 (110)
T 1byw_A 3 KFIIANARVENCAVIYCNDGFCELCGYSRAEVMQRPCTCDFLHGPC----------TQRRAAAQIAQALLGAEERKVEIA 72 (110)
T ss_dssp EEEEEETTSSSCBEEEECHHHHHHHTCCHHHHTTSBTTCGGGCCTT----------CCHHHHHHHHHHHHTTCCEEEEEE
T ss_pred CEEEEeccCCCCcEEEECHHHHHHhCCCHHHHccCCCccccccCCc----------CCHHHHHHHHHHHhcCCCceEEEE
Confidence 6888887 59999999999999999999999998 243333321 111123334445555666677888
Q ss_pred EEccCCCEEEEEEEEEEeecCCCCEEEEEEEEEeccHH
Q 002210 830 FFDQQGKYVEALLSANKRTNAEGKISGILCFLHVASPE 867 (953)
Q Consensus 830 ~~~kdG~~~~v~~s~~pi~d~~G~i~g~v~v~~DITer 867 (953)
+.+++|+.+|+.++..|+.+.+|++.+++++++|||++
T Consensus 73 ~~~~~g~~~~~~~~~~~~~~~~g~~~~~~~~~~DiTe~ 110 (110)
T 1byw_A 73 FYRKDGSCFLCLVDVVPVKNEDGAVIMFILNFEVVMEK 110 (110)
T ss_dssp EECTTSCEEEEEEEEEEEECTTCCEEEEEEEEEEEEEC
T ss_pred EEcCCCCEEEEEEEEEEeecCCCCEEEEEEEEEeccCC
Confidence 89999999999999999999999999999999999963
No 90
>2qkp_A Uncharacterized protein; structural genomics, unknown function, PSI-2, protein struct initiative; 1.75A {Streptococcus mutans}
Probab=99.07 E-value=4.2e-10 Score=109.88 Aligned_cols=123 Identities=13% Similarity=0.092 Sum_probs=87.8
Q ss_pred HHHHHHHHhcCccEEEEcCCCcEEecCHH---HHHHhCCCcchhcCCCccccccCCcHHHHHHHHHHHhcccceEEEEEE
Q 002210 611 NEMVRLIETAAVPILAVDASGNVNGWNSK---AAELTGLTVDQAIGTALVDLVAGDSVDVVKNMLSSAFLEERNVEIKLR 687 (953)
Q Consensus 611 ~~l~~lle~~~~~I~~~D~dg~i~~~N~a---~~~l~G~~~~eliG~~~~dl~~~~~~~~~~~~l~~~l~~~~~~e~~~~ 687 (953)
..+..++++++++|+++|.+|+|+++|++ ++++|| ..++++|+++.++.++...+.+.. +...+..+......+.
T Consensus 19 ~~l~~IL~~~~~gI~~vD~~g~I~~~N~a~~~~~~i~g-~~~~~iGr~v~~~~~~~~~~~v~~-i~~~l~~g~~~~~~~~ 96 (151)
T 2qkp_A 19 EQANLILNHLPLEITFVNKDDIFQYYNDSVPAAEMVFK-RTPSQVGRNVELCHPPKVLDKVKK-VFELLRNGQRDKVNMW 96 (151)
T ss_dssp HHHHHHHHHSSSEEEEEETTSBEEEECCCSCGGGCSSC-CCGGGTTSBGGGSSCHHHHHHHHH-HHHHHHTTSBSEEEEE
T ss_pred HHHHHHHHhCCCceEEEcCCCeEEEEeCCCchhhhhcC-CCHHHcCCCHHHhCCHHHHHHHHH-HHHHHHcCCccEEEEE
Confidence 34678999999999999999999999999 999999 567899999998766433332222 3333433333333332
Q ss_pred EcccCCCCCEEEEEEEEEEeecCCCCEEEEEEEEEecchhHHHHHHHHHHH
Q 002210 688 AFGPRETSGPVILVVNACCTQDTKENVIGVCFVGQDITGQKLVMDKYTRIQ 738 (953)
Q Consensus 688 ~~~~~~dG~~~~v~v~~~pi~d~~g~v~gvv~v~~DITerk~~E~~L~~se 738 (953)
... .+...++.++..|++|.+|+++|++.+++|||+.++.+++.++-+
T Consensus 97 ~~~---~~~~~~v~v~~~Pi~d~~G~~~G~vev~~Dit~l~~le~~r~~~~ 144 (151)
T 2qkp_A 97 FQS---ERLGKFVYVTYAAVRDQAGDFQGVLEYVQDIKPFFELDSEFNRDE 144 (151)
T ss_dssp EEE---TTTTEEEEEEEEEEECTTCCEEEEEEEEEECGGGGGGGGC-----
T ss_pred Eec---CCCCeEEEEEEEEEECCCCCEEEEEEEEEECHHHHhhhhhhhccc
Confidence 211 121356788999999989999999999999999998877755444
No 91
>2l0w_A Potassium voltage-gated channel, subfamily H (EAG member 2, isoform CRA_B; HERG, PAS domain, voltage-gated potassium channel, membrane; NMR {Homo sapiens} PDB: 2l1m_A 2l4r_A
Probab=99.06 E-value=1.7e-09 Score=100.70 Aligned_cols=113 Identities=13% Similarity=0.128 Sum_probs=90.0
Q ss_pred HHHHHHhcCccEEEEcC---CCcEEecCHHHHHHhCCCcchhcCCC--ccccccCCcHHHHHHHHHHHhcccceEEEEEE
Q 002210 613 MVRLIETAAVPILAVDA---SGNVNGWNSKAAELTGLTVDQAIGTA--LVDLVAGDSVDVVKNMLSSAFLEERNVEIKLR 687 (953)
Q Consensus 613 l~~lle~~~~~I~~~D~---dg~i~~~N~a~~~l~G~~~~eliG~~--~~dl~~~~~~~~~~~~l~~~l~~~~~~e~~~~ 687 (953)
+...+++++++++++|. +|+|+++|+++++++|++.++++|++ +..+.++.........+...+..+.....+..
T Consensus 21 ~~~~~~~~~~~i~~~d~~~~~g~i~~~N~~~~~l~g~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 100 (138)
T 2l0w_A 21 IIRKFEGQSRKFIIANARVENCAVIYCNDGFCELCGYSRAEVMQRPCTCDFLHGPRTQRRAAAQIAQALLGAEERKVEIA 100 (138)
T ss_dssp HHHHHTTTTSEEEEEESSSTTCBEEEECSHHHHHHSCCHHHHTTSBTTCGGGCCTTCCHHHHHHHHHHTTCSSCEEEEEE
T ss_pred HHHHHhcCCCCEEEEecCCCCCEEEEeCHHHHHHhCCCHHHHcCCCCcccccCCcccchhHHHHHHHHHhhcCCceeEEE
Confidence 45567789999999999 99999999999999999999999998 44455555544445555566644544444443
Q ss_pred EcccCCCCCEEEEEEEEEEeecCCCCEEEEEEEEEecchh
Q 002210 688 AFGPRETSGPVILVVNACCTQDTKENVIGVCFVGQDITGQ 727 (953)
Q Consensus 688 ~~~~~~dG~~~~v~v~~~pi~d~~g~v~gvv~v~~DITer 727 (953)
. .+++|..+|+.++..|+.+.+|.+.+++++++|||++
T Consensus 101 ~--~~~~g~~~~~~~~~~~~~~~~g~~~~~~~~~~Dit~~ 138 (138)
T 2l0w_A 101 F--YRKDGSCFLCLVDVVPVKNEDGAVIMFILNFEVVMEK 138 (138)
T ss_dssp E--ECTTSCEEEEEEEEEEEECTTSCEEEEEEEEEEEEEC
T ss_pred E--ECCCCCEEEEEEEEEEEeCCCCCEEEEEEEEEeccCC
Confidence 3 4568999999999999999899999999999999975
No 92
>2l0w_A Potassium voltage-gated channel, subfamily H (EAG member 2, isoform CRA_B; HERG, PAS domain, voltage-gated potassium channel, membrane; NMR {Homo sapiens} PDB: 2l1m_A 2l4r_A
Probab=99.06 E-value=1.2e-09 Score=101.64 Aligned_cols=114 Identities=16% Similarity=0.279 Sum_probs=89.6
Q ss_pred HHHHHhCCCCCCCCeEeecC---CccEEehhHHHHHHhCCChhhhhcccc-cccccccccccccccCcchHHHHHHHHHH
Q 002210 741 YVGIVSSPSALIPPIFMTDE---DGRCLEWNDGMEKLSGLKREEAIERML-IGEVFTVKNFGCRVKNHDTLTKLRIVMNK 816 (953)
Q Consensus 741 ~~~i~e~~~~li~~I~~~D~---~G~i~~~N~a~~~l~G~~~eeliGk~~-~~~~~~~~~~~~~l~~~~~~~~~~~~l~~ 816 (953)
+...+++++. +++++|. +|+|+++|+++++++|++.++++|+.+ ...+.+.. ....+...+..
T Consensus 21 ~~~~~~~~~~---~i~~~d~~~~~g~i~~~N~~~~~l~g~~~~~~~g~~~~~~~~~~~~----------~~~~~~~~~~~ 87 (138)
T 2l0w_A 21 IIRKFEGQSR---KFIIANARVENCAVIYCNDGFCELCGYSRAEVMQRPCTCDFLHGPR----------TQRRAAAQIAQ 87 (138)
T ss_dssp HHHHHTTTTS---EEEEEESSSTTCBEEEECSHHHHHHSCCHHHHTTSBTTCGGGCCTT----------CCHHHHHHHHH
T ss_pred HHHHHhcCCC---CEEEEecCCCCCEEEEeCHHHHHHhCCCHHHHcCCCCcccccCCcc----------cchhHHHHHHH
Confidence 3445666766 8999999 999999999999999999999999983 43333321 11123334555
Q ss_pred HhcCCCcceEEEEEEccCCCEEEEEEEEEEeecCCCCEEEEEEEEEeccHH
Q 002210 817 VISGQDADKILFGFFDQQGKYVEALLSANKRTNAEGKISGILCFLHVASPE 867 (953)
Q Consensus 817 ~~~g~~~~~~e~~~~~kdG~~~~v~~s~~pi~d~~G~i~g~v~v~~DITer 867 (953)
.+..+.....++.+.+++|+.+|+.++..|+.+.+|.+.+++++++|||++
T Consensus 88 ~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~g~~~~~~~~~~Dit~~ 138 (138)
T 2l0w_A 88 ALLGAEERKVEIAFYRKDGSCFLCLVDVVPVKNEDGAVIMFILNFEVVMEK 138 (138)
T ss_dssp HTTCSSCEEEEEEEECTTSCEEEEEEEEEEEECTTSCEEEEEEEEEEEEEC
T ss_pred HHhhcCCceeEEEEECCCCCEEEEEEEEEEEeCCCCCEEEEEEEEEeccCC
Confidence 556666667788888999999999999999999999999999999999963
No 93
>3fc7_A HTR-like protein, sensor protein; APC87712.1, HTR-like protein,haloarcula marismortui ATCC 430 structural genomics, PSI-2; 2.65A {Haloarcula marismortui}
Probab=99.04 E-value=2.6e-10 Score=105.56 Aligned_cols=108 Identities=14% Similarity=0.110 Sum_probs=76.7
Q ss_pred HHHHHHHHHHhcCccEEEEcCCCcEEecCHHHHHHhCCCcchhcCCCccccccCCcHHHHHHHHHHHhcccceEEEEEEE
Q 002210 609 ITNEMVRLIETAAVPILAVDASGNVNGWNSKAAELTGLTVDQAIGTALVDLVAGDSVDVVKNMLSSAFLEERNVEIKLRA 688 (953)
Q Consensus 609 ~~~~l~~lle~~~~~I~~~D~dg~i~~~N~a~~~l~G~~~~eliG~~~~dl~~~~~~~~~~~~l~~~l~~~~~~e~~~~~ 688 (953)
.+++++.++++++++|+++|.+|+|+++|+++++++|++.++++|+++.++++++...............+.... ..
T Consensus 17 ~~~~~~~i~~~~~~~i~~~d~~g~i~~~N~~~~~~~g~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~- 93 (125)
T 3fc7_A 17 TRKKFESLVSDSPDGIVHLTTNGTILSVNPSMAGRLGADPDTLVGQQLSAVMDSEAANQRLEAGKSAVENGTATR--SE- 93 (125)
T ss_dssp ---------CCSCCEEEEEETTSBEEEECHHHHHHHTSCHHHHTTSBGGGSSCHHHHHHHHHHHHHHHHHTSCEE--EE-
T ss_pred HHHHHHHHHhcCCCeEEEEcCCCeEEEECHHHHHHhCCCHHHHcCccHHHhCCHHHHHHHHHHHHHHhcCCCeEE--eE-
Confidence 677889999999999999999999999999999999999999999999998844333333333344443333331 11
Q ss_pred cccCCCCC-EEEEEEEEEEeecCCCCEEEEEEEEEecc
Q 002210 689 FGPRETSG-PVILVVNACCTQDTKENVIGVCFVGQDIT 725 (953)
Q Consensus 689 ~~~~~dG~-~~~v~v~~~pi~d~~g~v~gvv~v~~DIT 725 (953)
+|. .+|+.++..|+.+ +|...|++++++|||
T Consensus 94 -----~~~~~~~~~~~~~p~~~-~~~~~~~~~~~~DIT 125 (125)
T 3fc7_A 94 -----DAVGGRHYHNQYIPVDS-HRKSDTFQLVSRDIT 125 (125)
T ss_dssp -----EEETTEEEEEEEEESST-TTTTTEEEEEEEECC
T ss_pred -----cCCCcEEEEEEEEeEec-CCCeEEEEEEEecCC
Confidence 244 6788899999876 466788999999998
No 94
>2zmf_A CAMP and CAMP-inhibited CGMP 3',5'-cyclic phospho 10A; GAF domain, phosphodiesterase, CGMP-binding, HYD nucleotide-binding, structural genomics; HET: MSE CMP; 2.10A {Homo sapiens}
Probab=99.04 E-value=4e-09 Score=105.77 Aligned_cols=154 Identities=10% Similarity=0.058 Sum_probs=110.7
Q ss_pred HHHHHHHH-hccCCCCCHHHHHHHHHHHHHhhhCCCeEEEEeecCCCCceEEEeecCCCC-------CCccCCCCCCCCc
Q 002210 200 LAAKAISR-LQSLPSGNISLLCDVLVNEVSDLTGYDRVMVYKFHEDEHGEVVAECRRPDL-------EPYLGFHYPATDI 271 (953)
Q Consensus 200 ~~~~~~~~-l~~~~~~~~~~l~~~~v~~vr~~~g~DRVmiY~F~~d~~G~viaE~~~~~~-------~~~lg~~~pa~di 271 (953)
++..+... +.+ +.|++++++.+++.+++++|+||+.||-+++|+..-+..-...... ......++|...
T Consensus 14 ~Ll~~~~~i~~~--~~dld~ll~~i~~~~~~~l~ad~~~i~l~d~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~- 90 (189)
T 2zmf_A 14 FLLDVSKTYFDN--IVAIDSLLEHIMIYAKNLVNADRCALFQVDHKNKELYSDLFDIGEEKEGKPVFKKTKEIRFSIEK- 90 (189)
T ss_dssp HHHHHHHHHHHC--SSCHHHHHHHHHHHHHHHHTEEEEEEEEEETTTTEEEEEEECCSCEETTEECCEECCCCEEETTS-
T ss_pred HHHHHHHHHHHc--cCCHHHHHHHHHHHHHHHhCCCEEEEEEEecCCcEEEEEEEecccccccccccccccccccCCCc-
Confidence 34444444 345 5699999999999999999999999999999987655443322211 111222333322
Q ss_pred cHHHHHHHHhCCceEeecCCCCCceeeeCCCCCCccccCCccccCCChhHHHHhhhcCCeeEEEEEEEEeCCcccccccc
Q 002210 272 PQASRFLIMKNKVRMICDCLAPPVKVIQDKKLDQPLSLCGSTLRAPHGCHARYMENMGSIASLVMSVTINEAEDELDNDQ 351 (953)
Q Consensus 272 p~~ar~ly~~n~~r~i~D~~~~~~~l~~~~~~~~~ldl~~s~lr~~s~~h~~yl~nmgv~asl~~~i~~~~~~~~~~~~~ 351 (953)
.-....+..++.-.|+|+...|.. +.+.......++++.|++||+.+
T Consensus 91 -~~~~~v~~~~~~~~i~d~~~~~~~----------------------~~~~~~~~~~~~~s~l~vPl~~~---------- 137 (189)
T 2zmf_A 91 -GIAGQVARTGEVLNIPDAYADPRF----------------------NREVDLYTGYTTRNILCMPIVSR---------- 137 (189)
T ss_dssp -HHHHHHHHHCCCEEESCGGGSTTC----------------------CTHHHHHHCCCCCCEEEEEEEET----------
T ss_pred -cHHHHHHHhCCeEEEecccccccc----------------------cccchhhcccccceEEEeeeccc----------
Confidence 234456777888888885433211 34556778899999999999987
Q ss_pred cCCCceeEEEeeecC-CCCCCChhHHHHHHHHHHHHHHhhHH
Q 002210 352 EQGRKLWGLVVCHHT-SPRFVPFPLRYACEFLIQVFGVQVNK 392 (953)
Q Consensus 352 ~~~~~LWGLi~~hh~-~pr~~~~~~r~~~~~l~~~~~~~l~~ 392 (953)
|++||.|..+++ .|+.|+.....+++.++.++++.|..
T Consensus 138 ---~~~~Gvl~l~~~~~~~~f~~~d~~ll~~lA~q~a~Ai~n 176 (189)
T 2zmf_A 138 ---GSVIGVVQMVNKISGSAFSKTDENNFKMFAVFCALALHC 176 (189)
T ss_dssp ---TEEEEEEEEEEETTSSSCCHHHHHHHHHHHHHHHHHHHH
T ss_pred ---CceeeEEEEEEcCCCCCcCHHHHHHHHHHHHHHHHHHHH
Confidence 899999987665 58999999999999999988887754
No 95
>4hi4_A Aerotaxis transducer AER2; PAS domain, diatomic GAS sensor, signaling protein; HET: HEM GOL; 2.30A {Pseudomonas aeruginosa}
Probab=99.02 E-value=3.4e-09 Score=98.68 Aligned_cols=105 Identities=10% Similarity=0.165 Sum_probs=78.7
Q ss_pred HHHHHHHHhcCccEEEEcCCCcEEecCHHHHHHhC------------CCcchhcCCCccccccCCcHHHHHHHHHHHhcc
Q 002210 611 NEMVRLIETAAVPILAVDASGNVNGWNSKAAELTG------------LTVDQAIGTALVDLVAGDSVDVVKNMLSSAFLE 678 (953)
Q Consensus 611 ~~l~~lle~~~~~I~~~D~dg~i~~~N~a~~~l~G------------~~~~eliG~~~~dl~~~~~~~~~~~~l~~~l~~ 678 (953)
.+++.+++++++||+++|.+|+|+++|+++++++| ++.++++|+++.++++.. ......+.. ..
T Consensus 5 ~rl~~il~~~~~gviv~D~~g~I~~~N~a~~~llg~~~~~i~~~~~g~~~~~~~G~~~~~~~~~~--~~~~~~~~~-~~- 80 (121)
T 4hi4_A 5 ARIASALDNVSANVMIADNDLNIIYMNRTVSEMLGRAEADIRKQLPNFDAGRLMGANIDVFHKNP--AHQRHLLAN-LT- 80 (121)
T ss_dssp HHHHHHHTTSSSEEEEEETTCBEEEECHHHHHHHHHTHHHHHHHCTTCCGGGCTTCBGGGGCSSH--HHHHHHHHH-CS-
T ss_pred HHHHHHHhcCCccEEEEcCCCeEEEecHHHHHHHHHHHHHHHHhcCCCChHHhcCCCHHHhcCCH--HHHHHHHhC-cC-
Confidence 56788999999999999999999999999999996 889999999998877532 111222222 11
Q ss_pred cceEEEEEEEcccCCCCCEEEEEEEEEEeecCCCCEEEEEEEEEecchh
Q 002210 679 ERNVEIKLRAFGPRETSGPVILVVNACCTQDTKENVIGVCFVGQDITGQ 727 (953)
Q Consensus 679 ~~~~e~~~~~~~~~~dG~~~~v~v~~~pi~d~~g~v~gvv~v~~DITer 727 (953)
.....++.. +|. ++.++..|+++.+|++.|++++++|||++
T Consensus 81 -~~~~~~~~~-----~~~--~~~~~~~pi~~~~g~~~g~v~~~~DiTee 121 (121)
T 4hi4_A 81 -GVHKAELNL-----GGR--RFSLDVVPVFNDANARLGSAVQWTDRTEE 121 (121)
T ss_dssp -SCEEEEEEE-----TTE--EEEEEEEEEECTTSCEEEEEEEEEECC--
T ss_pred -CCcEEEEEE-----CCE--EEEEEEEEEECCCCCEEEEEEEEEEecCC
Confidence 223333332 232 45789999999899999999999999984
No 96
>3fg8_A Uncharacterized protein RHA05790; PAS domain, structural genomics, PS protein structure initiative, midwest center for structural genomics, MCSG; HET: 3PB; 1.80A {Rhodococcus SP}
Probab=99.00 E-value=2.2e-10 Score=106.30 Aligned_cols=112 Identities=11% Similarity=0.130 Sum_probs=84.1
Q ss_pred HHHHHHHHHHHHHhcCccEEEEcCCCcEEecCHHHHHHhCCCcchhcCCCccccccCCcHHHHHHHHHHHhcccceEEEE
Q 002210 606 LRIITNEMVRLIETAAVPILAVDASGNVNGWNSKAAELTGLTVDQAIGTALVDLVAGDSVDVVKNMLSSAFLEERNVEIK 685 (953)
Q Consensus 606 L~~~~~~l~~lle~~~~~I~~~D~dg~i~~~N~a~~~l~G~~~~eliG~~~~dl~~~~~~~~~~~~l~~~l~~~~~~e~~ 685 (953)
+....+....+++++|++|+++|.+|+|+++|+++++++|++.++++|+++.+++++.....+...+..++..+.....+
T Consensus 7 ~~~~~~~~~~il~~~~~~i~~~D~~g~i~~~N~a~~~l~g~~~~e~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 86 (118)
T 3fg8_A 7 HHHHSSGRENLYFQGGLGFMALDEDLRIIYVNSGCLRHVRRSRDELLGRVVTEVLPETQGSYFDALCRKVLATGREQQTR 86 (118)
T ss_dssp ------CCCCSSSCTTCEEEEECTTCBEEEECHHHHHHHTCCHHHHTTSBHHHHCGGGTTSHHHHHHHHHHHHCCCEEEE
T ss_pred cccccchHHHHHhhCCceEEEECCCCeEEEECHHHHHHhCCCHHHHcCCcHHHHcCccchHHHHHHHHHHHHcCCceEEE
Confidence 44455566778999999999999999999999999999999999999999999888766666666777777555555553
Q ss_pred EEEcccCCCCCEEEEEEEEEEeecCCCCEEEEEEEEEecchh
Q 002210 686 LRAFGPRETSGPVILVVNACCTQDTKENVIGVCFVGQDITGQ 727 (953)
Q Consensus 686 ~~~~~~~~dG~~~~v~v~~~pi~d~~g~v~gvv~v~~DITer 727 (953)
+..... +| .|+.++..|..+ |++++++|||+|
T Consensus 87 ~~~~~~--~g--~~~~~~~~p~~~------g~v~~~~DITer 118 (118)
T 3fg8_A 87 VDSLYS--PG--MTIEVTAAADSG------ALVVHFRDVTAE 118 (118)
T ss_dssp EECSSS--TT--CEEEEEEEEETT------EEEEEEEECSCC
T ss_pred EEEEcC--CC--eEEEEEEEEcCC------cEEEEEEeccCC
Confidence 333222 44 567778888754 377889999985
No 97
>1byw_A Protein (human ERG potassium channel); PAS domain, potassium channel domain, membrane protein; 2.60A {Homo sapiens} SCOP: d.110.3.6
Probab=98.99 E-value=4.9e-09 Score=92.87 Aligned_cols=104 Identities=13% Similarity=0.128 Sum_probs=79.8
Q ss_pred ccEEEEcC---CCcEEecCHHHHHHhCCCcchhcCCC-ccc-cccCCcHHHHHHHHHHHhcccceEEEEEEEcccCCCCC
Q 002210 622 VPILAVDA---SGNVNGWNSKAAELTGLTVDQAIGTA-LVD-LVAGDSVDVVKNMLSSAFLEERNVEIKLRAFGPRETSG 696 (953)
Q Consensus 622 ~~I~~~D~---dg~i~~~N~a~~~l~G~~~~eliG~~-~~d-l~~~~~~~~~~~~l~~~l~~~~~~e~~~~~~~~~~dG~ 696 (953)
.+|+++|. +|+|+++|+++++++|++.++++|++ +.. +.++.........+...+..+.....+... .+++|.
T Consensus 2 ~~i~i~d~~~~~g~i~~~N~~~~~~~g~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~g~ 79 (110)
T 1byw_A 2 RKFIIANARVENCAVIYCNDGFCELCGYSRAEVMQRPCTCDFLHGPCTQRRAAAQIAQALLGAEERKVEIAF--YRKDGS 79 (110)
T ss_dssp CEEEEEETTSSSCBEEEECHHHHHHHTCCHHHHTTSBTTCGGGCCTTCCHHHHHHHHHHHHTTCCEEEEEEE--ECTTSC
T ss_pred CCEEEEeccCCCCcEEEECHHHHHHhCCCHHHHccCCCccccccCCcCCHHHHHHHHHHHhcCCCceEEEEE--EcCCCC
Confidence 57888997 59999999999999999999999998 244 444444444444555555444444444433 456899
Q ss_pred EEEEEEEEEEeecCCCCEEEEEEEEEecchh
Q 002210 697 PVILVVNACCTQDTKENVIGVCFVGQDITGQ 727 (953)
Q Consensus 697 ~~~v~v~~~pi~d~~g~v~gvv~v~~DITer 727 (953)
.+|+.++..|+.+.+|.+.+++++++|||++
T Consensus 80 ~~~~~~~~~~~~~~~g~~~~~~~~~~DiTe~ 110 (110)
T 1byw_A 80 CFLCLVDVVPVKNEDGAVIMFILNFEVVMEK 110 (110)
T ss_dssp EEEEEEEEEEEECTTCCEEEEEEEEEEEEEC
T ss_pred EEEEEEEEEEeecCCCCEEEEEEEEEeccCC
Confidence 9999999999999999999999999999985
No 98
>3d72_A Vivid PAS protein VVD; circadian, photoreceptor, blue-light, LOV, signaling protein; HET: FAD; 1.65A {Neurospora crassa} PDB: 3is2_A* 2pd8_A* 3hjk_A* 2pdr_A* 2pd7_A* 2pdt_A* 3hji_A* 3rh8_B*
Probab=98.98 E-value=2.9e-09 Score=102.19 Aligned_cols=115 Identities=13% Similarity=0.135 Sum_probs=82.8
Q ss_pred HHHhCCCCCCCCeEeec---CCccEEehhHHHHHHhCCChhhhhccccccccccccccc--ccccCcchHHHHHHHHHHH
Q 002210 743 GIVSSPSALIPPIFMTD---EDGRCLEWNDGMEKLSGLKREEAIERMLIGEVFTVKNFG--CRVKNHDTLTKLRIVMNKV 817 (953)
Q Consensus 743 ~i~e~~~~li~~I~~~D---~~G~i~~~N~a~~~l~G~~~eeliGk~~~~~~~~~~~~~--~~l~~~~~~~~~~~~l~~~ 817 (953)
.++++. + +|+++| .+|+|+++|+++++++||+.++++|+++. .++++.... .+.... ........+...
T Consensus 30 ~~~~~~-~---~i~~~d~~d~~g~i~~~N~a~~~l~G~~~~el~g~~~~-~l~~~~~~~~~~~~~~~-~~~~~~~~~~~~ 103 (149)
T 3d72_A 30 GPVDTS-V---ALILCDLKQKDTPIVYASEAFLYMTGYSNAEVLGRNCR-FLQSPDGMVKPKSTRKY-VDSNTINTMRKA 103 (149)
T ss_dssp CSCCTT-S---CEEEEETTSTTCCEEEECHHHHHHHCCCHHHHTTSCGG-GGGSTTSCCCTTCCCSS-SCHHHHHHHHHH
T ss_pred HhhcCC-c---cEEEEeccCCCCcEEEECHHHHHHHCcCHHHHcCCChh-HhCCccccccccccccc-cChHHHHHHHHH
Confidence 445553 3 899999 79999999999999999999999999875 333321000 000000 011123334444
Q ss_pred hcCCCcceEEEEEEccCCCEEEEEEEEEEeecCCCCEEEEEEEEEe
Q 002210 818 ISGQDADKILFGFFDQQGKYVEALLSANKRTNAEGKISGILCFLHV 863 (953)
Q Consensus 818 ~~g~~~~~~e~~~~~kdG~~~~v~~s~~pi~d~~G~i~g~v~v~~D 863 (953)
+..+.....++.+.++||+.+|+.++..|++|.+|++.+++++++|
T Consensus 104 ~~~~~~~~~e~~~~~~dG~~~~~~~~~~~i~~~~g~~~~~v~~~~D 149 (149)
T 3d72_A 104 IDRNAEVQVEVVNFKKNGQRFVNFLTMIPVRDETGEYRYSMGFQCE 149 (149)
T ss_dssp HHHTCCEEEEEEEECTTCCEEEEEEEEEEEECTTSSEEEEEEECCC
T ss_pred HHCCCceEEEEEEECCCCCEEEEEEEEEEEEcCCCCEEEEEEEEeC
Confidence 4555566788888999999999999999999999999999999877
No 99
>3oov_A Methyl-accepting chemotaxis protein, putative; structural genomics, PSI-2, protein structure initiative; 2.20A {Geobacter sulfurreducens}
Probab=98.97 E-value=1.4e-08 Score=99.86 Aligned_cols=155 Identities=14% Similarity=0.110 Sum_probs=115.4
Q ss_pred HHHHhccCCCCCHHHHHHHHHHHHHhhhCCCeEEEEeecCCCCceEEEeecCCCCCCccCCCCCCCCccHHHHHHHHhCC
Q 002210 204 AISRLQSLPSGNISLLCDVLVNEVSDLTGYDRVMVYKFHEDEHGEVVAECRRPDLEPYLGFHYPATDIPQASRFLIMKNK 283 (953)
Q Consensus 204 ~~~~l~~~~~~~~~~l~~~~v~~vr~~~g~DRVmiY~F~~d~~G~viaE~~~~~~~~~lg~~~pa~dip~~ar~ly~~n~ 283 (953)
+...|.+ +.+++++++.+++.+++++|+||+.||-++++...-.+.-+..+.-....+..||-.+-..-....+..++
T Consensus 7 i~~~l~~--~~~~~~~l~~~~~~~~~~~~~~~~~i~l~d~~~~~l~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 84 (169)
T 3oov_A 7 ISSRIQK--SIDVDEVLRLCAEGLHDVLGYERVNILMADTARTSLSFVAAVGTADFNPAGVVLPLDQRGGVITKCFTDRQ 84 (169)
T ss_dssp HHHHHHH--CCCHHHHHHHHHHHHHHTTCCSEEEEEEECTTSSEEEEEEEESCSSCCCTTCEEESSGGGHHHHHHHHHTC
T ss_pred HHHHHhh--hcCHHHHHHHHHHHHHHhhCCceEEEEEEeCCCCeEEEEEEeCchhhhhhcccCCcccccchHHHHHhcCC
Confidence 3445555 67999999999999999999999999999998765555555554444455666765444556677788888
Q ss_pred ceEeecCCCCCceeeeCCCCCCccccCCccccCCChhHHHHhhhcCCeeEEEEEEEEeCCcccccccccCCCceeEEEee
Q 002210 284 VRMICDCLAPPVKVIQDKKLDQPLSLCGSTLRAPHGCHARYMENMGSIASLVMSVTINEAEDELDNDQEQGRKLWGLVVC 363 (953)
Q Consensus 284 ~r~i~D~~~~~~~l~~~~~~~~~ldl~~s~lr~~s~~h~~yl~nmgv~asl~~~i~~~~~~~~~~~~~~~~~~LWGLi~~ 363 (953)
.-+|.|+...|-..... + ..+++...|+++.+++||+.+ |+++|+|.+
T Consensus 85 ~~~i~d~~~~~~~~~~~------------------~-~~~~~~~~~~~s~l~vPl~~~-------------~~~iGvl~~ 132 (169)
T 3oov_A 85 VYMIDDVSAYPTDFRLQ------------------S-PYDAIRALRSKSFVICPIVVK-------------GEAIGVFAV 132 (169)
T ss_dssp CEEESCGGGSCGGGSCC------------------T-TGGGCGGGCCSSEEEEEEEET-------------TEEEEEEEE
T ss_pred CEEeccccchhhhhhcc------------------c-cHHHHHhcCcCcEEEEEEEeC-------------CcEEEEEEE
Confidence 88888855443211000 0 023467789999999999987 899999999
Q ss_pred ecCCC-CCCChhHHHHHHHHHHHHHHhhHH
Q 002210 364 HHTSP-RFVPFPLRYACEFLIQVFGVQVNK 392 (953)
Q Consensus 364 hh~~p-r~~~~~~r~~~~~l~~~~~~~l~~ 392 (953)
++..+ +.++......++.++.+++..|..
T Consensus 133 ~~~~~~~~f~~~d~~~l~~~a~~~a~ai~n 162 (169)
T 3oov_A 133 DNRSSRRSLNDTDVDTIKLFADQASSAIVR 162 (169)
T ss_dssp ECTTSSSCCCHHHHHHHHHHHHHHHHHHHH
T ss_pred EccccCCCCCHHHHHHHHHHHHHHHHHHHH
Confidence 99875 458999999999888888877743
No 100
>3mfx_A Sensory BOX/ggdef family protein; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 2.40A {Shewanella oneidensis}
Probab=98.97 E-value=1.4e-09 Score=103.09 Aligned_cols=113 Identities=9% Similarity=0.002 Sum_probs=78.7
Q ss_pred HHHHHHHhCCCCCCCCeEeecCCccEEehhHHHHHHhCCChhhhhcccccccccccccccccccCcchHHHHHHHHHHHh
Q 002210 739 GDYVGIVSSPSALIPPIFMTDEDGRCLEWNDGMEKLSGLKREEAIERMLIGEVFTVKNFGCRVKNHDTLTKLRIVMNKVI 818 (953)
Q Consensus 739 ~~~~~i~e~~~~li~~I~~~D~~G~i~~~N~a~~~l~G~~~eeliGk~~~~~~~~~~~~~~~l~~~~~~~~~~~~l~~~~ 818 (953)
..++.+++++++ +|+++|.+|+|+++|+++++++||++++++|+++.+. ++++.. ......+.. +....
T Consensus 7 ~~l~~i~~~~~d---~i~~~D~~g~I~~~N~aa~~l~G~~~~el~G~~~~~l-~~~~~~---~~~~~~~~~----~~~~~ 75 (129)
T 3mfx_A 7 ETIELFIQHLTE---AMILVNANGFIRSCNQRSAELLDCPQVSLKGQDWRNF-LTEHHQ---ARYDNLLSH----DVQLG 75 (129)
T ss_dssp HHHHHHHTTCSS---EEEEEETTSBEEEECHHHHHHTTSCHHHHTTSBGGGG-BCTTCC---GGGGCTTC----------
T ss_pred HHHHHHHhcCCc---eEEEECCCCEEEeEhHHHHHHHCcCHHHHcCCcHHHH-cChHhH---HHHHHHHHH----HHhcC
Confidence 357889999988 9999999999999999999999999999999998644 433211 000011110 11110
Q ss_pred c----CCCcceEEEEEEccCCCEEEEEEEEEEeecCCCCEEEEEEEEEecc
Q 002210 819 S----GQDADKILFGFFDQQGKYVEALLSANKRTNAEGKISGILCFLHVAS 865 (953)
Q Consensus 819 ~----g~~~~~~e~~~~~kdG~~~~v~~s~~pi~d~~G~i~g~v~v~~DIT 865 (953)
. .......++.++++||+.+|+.++++|+. +++.. ++++++|..
T Consensus 76 ~~~~~~~~~~~~E~~~~rkdG~~~~velsis~i~--~~~~~-~v~~~~~~~ 123 (129)
T 3mfx_A 76 TNCGQPVQHPAQETTLICASGKAKDVELSISYIP--GHEPM-FVMVMHDLE 123 (129)
T ss_dssp ----CCSCEEEEEEEEECTTSCEEEEEEEEEEEC--SSSCE-EEEEEEEC-
T ss_pred cccccccCCCceEEEEEcCCCCEEEEEEEEEEec--CCCcE-EEEEEechh
Confidence 1 00123478889999999999999999997 33334 678889865
No 101
>3fc7_A HTR-like protein, sensor protein; APC87712.1, HTR-like protein,haloarcula marismortui ATCC 430 structural genomics, PSI-2; 2.65A {Haloarcula marismortui}
Probab=98.95 E-value=1e-09 Score=101.40 Aligned_cols=108 Identities=10% Similarity=0.026 Sum_probs=71.9
Q ss_pred HHHHHHHHHhCCCCCCCCeEeecCCccEEehhHHHHHHhCCChhhhhcccccccccccccccccccCcchHHHHHHHHHH
Q 002210 737 IQGDYVGIVSSPSALIPPIFMTDEDGRCLEWNDGMEKLSGLKREEAIERMLIGEVFTVKNFGCRVKNHDTLTKLRIVMNK 816 (953)
Q Consensus 737 se~~~~~i~e~~~~li~~I~~~D~~G~i~~~N~a~~~l~G~~~eeliGk~~~~~~~~~~~~~~~l~~~~~~~~~~~~l~~ 816 (953)
++++|+.+++++++ +|+++|.+|+|+++|+++++++|++.++++|+++.+.+ +. +....+......
T Consensus 17 ~~~~~~~i~~~~~~---~i~~~d~~g~i~~~N~~~~~~~g~~~~~~~g~~~~~~~-~~----------~~~~~~~~~~~~ 82 (125)
T 3fc7_A 17 TRKKFESLVSDSPD---GIVHLTTNGTILSVNPSMAGRLGADPDTLVGQQLSAVM-DS----------EAANQRLEAGKS 82 (125)
T ss_dssp ---------CCSCC---EEEEEETTSBEEEECHHHHHHHTSCHHHHTTSBGGGSS-CH----------HHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCCC---eEEEEcCCCeEEEECHHHHHHhCCCHHHHcCccHHHhC-CH----------HHHHHHHHHHHH
Confidence 67789999999988 99999999999999999999999999999999976433 22 111222222233
Q ss_pred HhcCCCcceEEEEEEccCCC-EEEEEEEEEEeecCCCCEEEEEEEEEecc
Q 002210 817 VISGQDADKILFGFFDQQGK-YVEALLSANKRTNAEGKISGILCFLHVAS 865 (953)
Q Consensus 817 ~~~g~~~~~~e~~~~~kdG~-~~~v~~s~~pi~d~~G~i~g~v~v~~DIT 865 (953)
....+... ..++|. .+|+.++..|+.+. |...|++++++|||
T Consensus 83 ~~~~~~~~------~~~~~~~~~~~~~~~~p~~~~-~~~~~~~~~~~DIT 125 (125)
T 3fc7_A 83 AVENGTAT------RSEDAVGGRHYHNQYIPVDSH-RKSDTFQLVSRDIT 125 (125)
T ss_dssp HHHHTSCE------EEEEEETTEEEEEEEEESSTT-TTTTEEEEEEEECC
T ss_pred HhcCCCeE------EeEcCCCcEEEEEEEEeEecC-CCeEEEEEEEecCC
Confidence 33333221 233455 68899999998765 66678999999998
No 102
>4hi4_A Aerotaxis transducer AER2; PAS domain, diatomic GAS sensor, signaling protein; HET: HEM GOL; 2.30A {Pseudomonas aeruginosa}
Probab=98.92 E-value=8.5e-09 Score=95.95 Aligned_cols=105 Identities=12% Similarity=0.103 Sum_probs=75.7
Q ss_pred HHHHHHHhCCCCCCCCeEeecCCccEEehhHHHHHHhC------------CChhhhhcccccccccccccccccccCcch
Q 002210 739 GDYVGIVSSPSALIPPIFMTDEDGRCLEWNDGMEKLSG------------LKREEAIERMLIGEVFTVKNFGCRVKNHDT 806 (953)
Q Consensus 739 ~~~~~i~e~~~~li~~I~~~D~~G~i~~~N~a~~~l~G------------~~~eeliGk~~~~~~~~~~~~~~~l~~~~~ 806 (953)
.+++.+++++++ +|+++|.+|+|+++|+++++++| |++++++|+++. .+++.+ ..
T Consensus 5 ~rl~~il~~~~~---gviv~D~~g~I~~~N~a~~~llg~~~~~i~~~~~g~~~~~~~G~~~~-~~~~~~---------~~ 71 (121)
T 4hi4_A 5 ARIASALDNVSA---NVMIADNDLNIIYMNRTVSEMLGRAEADIRKQLPNFDAGRLMGANID-VFHKNP---------AH 71 (121)
T ss_dssp HHHHHHHTTSSS---EEEEEETTCBEEEECHHHHHHHHHTHHHHHHHCTTCCGGGCTTCBGG-GGCSSH---------HH
T ss_pred HHHHHHHhcCCc---cEEEEcCCCeEEEecHHHHHHHHHHHHHHHHhcCCCChHHhcCCCHH-HhcCCH---------HH
Confidence 468899999988 99999999999999999999996 899999999874 333321 11
Q ss_pred HHHHHHHHHHHhcCCCcceEEEEEEccCCCEEEEEEEEEEeecCCCCEEEEEEEEEeccHH
Q 002210 807 LTKLRIVMNKVISGQDADKILFGFFDQQGKYVEALLSANKRTNAEGKISGILCFLHVASPE 867 (953)
Q Consensus 807 ~~~~~~~l~~~~~g~~~~~~e~~~~~kdG~~~~v~~s~~pi~d~~G~i~g~v~v~~DITer 867 (953)
....+.. .. .....++ . .+|+ ++.++.+|++|.+|++.|++++++|||++
T Consensus 72 ---~~~~~~~-~~--~~~~~~~--~-~~~~--~~~~~~~pi~~~~g~~~g~v~~~~DiTee 121 (121)
T 4hi4_A 72 ---QRHLLAN-LT--GVHKAEL--N-LGGR--RFSLDVVPVFNDANARLGSAVQWTDRTEE 121 (121)
T ss_dssp ---HHHHHHH-CS--SCEEEEE--E-ETTE--EEEEEEEEEECTTSCEEEEEEEEEECC--
T ss_pred ---HHHHHhC-cC--CCcEEEE--E-ECCE--EEEEEEEEEECCCCCEEEEEEEEEEecCC
Confidence 1112222 11 2223332 2 2454 45788999999999999999999999974
No 103
>3k2n_A Sigma-54-dependent transcriptional regulator; PSI-2, protein structure initiative, structural genomics; 2.50A {Chlorobium tepidum tls}
Probab=98.92 E-value=3.1e-08 Score=98.32 Aligned_cols=158 Identities=9% Similarity=0.019 Sum_probs=108.9
Q ss_pred HHHHHHHHHHhccCCCCCHHHHHHHHHHHHHhhhCCCeEEEEeecCCCCceEEE-eecCCCC-CCccCCCCCCCCccHHH
Q 002210 198 YKLAAKAISRLQSLPSGNISLLCDVLVNEVSDLTGYDRVMVYKFHEDEHGEVVA-ECRRPDL-EPYLGFHYPATDIPQAS 275 (953)
Q Consensus 198 ~~~~~~~~~~l~~~~~~~~~~l~~~~v~~vr~~~g~DRVmiY~F~~d~~G~via-E~~~~~~-~~~lg~~~pa~dip~~a 275 (953)
.+++.++...|.+ +.+++++++.+++.+++++|+||+.||-+++++..-.+. .....+. ....+..+|..+-+ +
T Consensus 5 l~ll~~i~~~l~~--~~d~~~~l~~i~~~~~~~~~~~~~~i~l~d~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~--~ 80 (177)
T 3k2n_A 5 LKLMQYIGDAIGT--IRDPQELFRTVTDKLRLLFAFDSAVIITIDRERREASVFFEMLRFELPEQLRHQTRSIAGTW--L 80 (177)
T ss_dssp HHHHHHHHHHHTT--CCSHHHHHHHHHHHHTTTCCCSEEEEEEEETTTTEEEEEEEECSSCCCSTTCCSEEECTTSG--G
T ss_pred HHHHHHHHHHHhc--ccCHHHHHHHHHHHHHHhcCCCeEEEEEEcCCCCeEEeEEecccCCCCchhhcccCCccccH--H
Confidence 4566677777877 779999999999999999999999999999988765553 2111111 11222233322111 1
Q ss_pred HHHHHhCCceEeecCCCCCceeeeCCCCCCccccCCccccCCC--hhHHHHhhhcCCeeEEEEEEEEeCCcccccccccC
Q 002210 276 RFLIMKNKVRMICDCLAPPVKVIQDKKLDQPLSLCGSTLRAPH--GCHARYMENMGSIASLVMSVTINEAEDELDNDQEQ 353 (953)
Q Consensus 276 r~ly~~n~~r~i~D~~~~~~~l~~~~~~~~~ldl~~s~lr~~s--~~h~~yl~nmgv~asl~~~i~~~~~~~~~~~~~~~ 353 (953)
...+..+...++ |....+ -+... ++..+.+...|+++.|++||+.+
T Consensus 81 ~~v~~~~~~~~~-d~~~~~-------------------~~~~~~~~~~~~~~~~~~~~s~l~vPL~~~------------ 128 (177)
T 3k2n_A 81 EGHLDDRTVTVA-SIARDI-------------------PSFGADGAPLLWTLHELGMRQIVLSPLRSG------------ 128 (177)
T ss_dssp GGGTTCCSCEEE-ETTTTC-------------------TTTTTTTCHHHHHHHHHTCCEEEEEEEEET------------
T ss_pred HHHhccCCceEe-chhhcc-------------------cccCCcchhHHHHHHHcCceEEEEEEEEEC------------
Confidence 222333444333 432210 00011 24446688999999999999988
Q ss_pred CCceeEEEeeecCCCCCCChhHHHHHHHHHHHHHHhhHH
Q 002210 354 GRKLWGLVVCHHTSPRFVPFPLRYACEFLIQVFGVQVNK 392 (953)
Q Consensus 354 ~~~LWGLi~~hh~~pr~~~~~~r~~~~~l~~~~~~~l~~ 392 (953)
++++|.|..+++.|+.++......++.++.++++.|..
T Consensus 129 -~~~iGvL~l~~~~~~~f~~~d~~ll~~lA~~~a~Ai~n 166 (177)
T 3k2n_A 129 -GRVIGFLSFVSAEEKLWSDGDKSLLSGVSSSIAIAVSN 166 (177)
T ss_dssp -TEEEEEEEEEESSCCCCCHHHHHHHHHHHHHHHHHHHH
T ss_pred -CEEEEEEEEEECCCCCCCHHHHHHHHHHHHHHHHHHHH
Confidence 89999999999999999999999999999988888754
No 104
>2vlg_A Sporulation kinase A; histidine kinase, two-component regulatory system, two-component signal transduction, transferase, phosphorylation, SCOD; 1.7A {Bacillus subtilis}
Probab=98.92 E-value=5.4e-09 Score=96.23 Aligned_cols=103 Identities=11% Similarity=0.031 Sum_probs=68.6
Q ss_pred HHHhCCCCCCCCeEeecCCccEEehhHHHHHHhCCChhhhhcccccccccccccccccccCcchHHHHHHHHHHHhcCCC
Q 002210 743 GIVSSPSALIPPIFMTDEDGRCLEWNDGMEKLSGLKREEAIERMLIGEVFTVKNFGCRVKNHDTLTKLRIVMNKVISGQD 822 (953)
Q Consensus 743 ~i~e~~~~li~~I~~~D~~G~i~~~N~a~~~l~G~~~eeliGk~~~~~~~~~~~~~~~l~~~~~~~~~~~~l~~~~~g~~ 822 (953)
.+++++++ +|+++|.+|+|+|+|+++++++||+++|++|+.+.+.++|+ +...+...+. ....
T Consensus 3 ~lle~~~d---~i~v~d~~G~i~yvn~~~~~~lGy~~~el~G~~~~~~ihp~-----------D~~~~~~~~~---~~~~ 65 (111)
T 2vlg_A 3 FPLQTKTD---IHAVLASNGRIIYISANSKLHLGYLQGEMIGSFLKTFLHEE-----------DQFLVESYFY---NEHH 65 (111)
T ss_dssp ------CC---EEEEECTTSBEEEECTTHHHHHSCCHHHHTTSBGGGGBCGG-----------GHHHHHHHHH---CSCC
T ss_pred chhhcCCC---EEEEEcCCCeEEEEChHHHHHhCCCHHHHcCCcHHHeECHh-----------HHHHHHHHHh---ccCC
Confidence 35677776 89999999999999999999999999999999987555444 3233333332 2233
Q ss_pred cceEEEEEEccCCCEEEEEEEEEEeecCCCCEE-EEEEEEE
Q 002210 823 ADKILFGFFDQQGKYVEALLSANKRTNAEGKIS-GILCFLH 862 (953)
Q Consensus 823 ~~~~e~~~~~kdG~~~~v~~s~~pi~d~~G~i~-g~v~v~~ 862 (953)
....++++++|||+++|+..++.++.+.++... .++|-++
T Consensus 66 ~~~~e~r~~~kdG~~~wve~~~~~v~~~~~~~~r~~~~~~~ 106 (111)
T 2vlg_A 66 LMPCTFRFIKKDHTIVWVEAAVEIVTTRAERTEREIILKMK 106 (111)
T ss_dssp SSCEEEEEECTTSCEEEEEEEEEEC-------CCCEEEEEE
T ss_pred CccEEEEEEcCCCCEEEEEEEEEEEecccCCceEEEEEEEE
Confidence 346789999999999999999999998765433 2455443
No 105
>3mfx_A Sensory BOX/ggdef family protein; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 2.40A {Shewanella oneidensis}
Probab=98.90 E-value=2.5e-09 Score=101.37 Aligned_cols=111 Identities=13% Similarity=0.118 Sum_probs=79.7
Q ss_pred HHHHHHHHhcCccEEEEcCCCcEEecCHHHHHHhCCCcchhcCCCccccccCCcHHHHHHHHHHHhcccc-------eEE
Q 002210 611 NEMVRLIETAAVPILAVDASGNVNGWNSKAAELTGLTVDQAIGTALVDLVAGDSVDVVKNMLSSAFLEER-------NVE 683 (953)
Q Consensus 611 ~~l~~lle~~~~~I~~~D~dg~i~~~N~a~~~l~G~~~~eliG~~~~dl~~~~~~~~~~~~l~~~l~~~~-------~~e 683 (953)
+.+..++++++++|+++|.+|+|+++|++++++|||+.++++|+++.+++++++.......+......+. ...
T Consensus 7 ~~l~~i~~~~~d~i~~~D~~g~I~~~N~aa~~l~G~~~~el~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 86 (129)
T 3mfx_A 7 ETIELFIQHLTEAMILVNANGFIRSCNQRSAELLDCPQVSLKGQDWRNFLTEHHQARYDNLLSHDVQLGTNCGQPVQHPA 86 (129)
T ss_dssp HHHHHHHTTCSSEEEEEETTSBEEEECHHHHHHTTSCHHHHTTSBGGGGBCTTCCGGGGCTTC----------CCSCEEE
T ss_pred HHHHHHHhcCCceEEEECCCCEEEeEhHHHHHHHCcCHHHHcCCcHHHHcChHhHHHHHHHHHHHHhcCcccccccCCCc
Confidence 4578899999999999999999999999999999999999999999999987765433222222221111 112
Q ss_pred EEEEEcccCCCCCEEEEEEEEEEeecCCCCEEEEEEEEEecch
Q 002210 684 IKLRAFGPRETSGPVILVVNACCTQDTKENVIGVCFVGQDITG 726 (953)
Q Consensus 684 ~~~~~~~~~~dG~~~~v~v~~~pi~d~~g~v~gvv~v~~DITe 726 (953)
.++. ..++||+.+|+.++..|+.+ ++.. ++++++|+..
T Consensus 87 ~E~~--~~rkdG~~~~velsis~i~~--~~~~-~v~~~~~~~~ 124 (129)
T 3mfx_A 87 QETT--LICASGKAKDVELSISYIPG--HEPM-FVMVMHDLEH 124 (129)
T ss_dssp EEEE--EECTTSCEEEEEEEEEEECS--SSCE-EEEEEEEC--
T ss_pred eEEE--EEcCCCCEEEEEEEEEEecC--CCcE-EEEEEechhh
Confidence 3333 35679999999999999983 3333 4567788753
No 106
>3trc_A Phosphoenolpyruvate-protein phosphotransferase; signal transduction; HET: MSE; 1.65A {Coxiella burnetii}
Probab=98.90 E-value=2.3e-08 Score=98.33 Aligned_cols=158 Identities=8% Similarity=0.080 Sum_probs=114.1
Q ss_pred hHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHhhhCCCeEEEEeecCCCCceEEEeecCCCCCCccCCCCCCCCccHH
Q 002210 195 LKSYKLAAKAISRLQSLPSGNISLLCDVLVNEVSDLTGYDRVMVYKFHEDEHGEVVAECRRPDLEPYLGFHYPATDIPQA 274 (953)
Q Consensus 195 ~~~~~~~~~~~~~l~~~~~~~~~~l~~~~v~~vr~~~g~DRVmiY~F~~d~~G~viaE~~~~~~~~~lg~~~pa~dip~~ 274 (953)
++.++.+.++...+.+ +.+++++++.+++.+.+++|+|++.||-+++++..-++.-+....-+..-...+|..+ .-
T Consensus 4 l~~L~~L~~i~~~l~~--~~~~~~~l~~~~~~~~~~~~~~~~~i~l~d~~~~~l~~~~~~g~~~~~~~~~~~~~~~--~~ 79 (171)
T 3trc_A 4 MNMLKILRQITQEVNA--APNLEQALKLVVVRLCEALPADACSLFICDDVHGEYVLMATQGLNSKQVGKLRLKFGE--GL 79 (171)
T ss_dssp HHHHHHHHHHHHHHHH--CSSHHHHHHHHHHHHHHHTTCSEEEEEEEETTTTEEEEEEEESSCGGGTTTCEEETTC--HH
T ss_pred HHHHHHHHHHHHHHhc--ccCHHHHHHHHHHHHHHHhCCcEEEEEEEECCCCeEEEEEecCCCccccccEeecCCC--Ch
Confidence 3455666677777877 6799999999999999999999999999999875444443332222222223454443 34
Q ss_pred HHHHHHhCCceEeecCCCCCceeeeCCCCCCccccCCccccCCChhHHHHhhhcCCeeEEEEEEEEeCCcccccccccCC
Q 002210 275 SRFLIMKNKVRMICDCLAPPVKVIQDKKLDQPLSLCGSTLRAPHGCHARYMENMGSIASLVMSVTINEAEDELDNDQEQG 354 (953)
Q Consensus 275 ar~ly~~n~~r~i~D~~~~~~~l~~~~~~~~~ldl~~s~lr~~s~~h~~yl~nmgv~asl~~~i~~~~~~~~~~~~~~~~ 354 (953)
....+..++.-+|.|+...|-. .. .+ .+...|+++.+++||+.+
T Consensus 80 ~~~~~~~~~~~~~~d~~~~~~~-------~~------------~~----~~~~~~~~s~l~vPl~~~------------- 123 (171)
T 3trc_A 80 IGLVGEREEPINLADAPLHPAY-------KH------------RP----ELGEEDYHGFLGIPIIEQ------------- 123 (171)
T ss_dssp HHHHHHHTSCEEESCGGGSTTC-------CC------------CG----GGCCCCCCEEEEEEEEET-------------
T ss_pred hhHHHhcCCeEEeCCCCCCCcc-------cc------------cc----cCCcccccEEEEEeEEEC-------------
Confidence 5566777887788885433211 00 01 124578999999999987
Q ss_pred CceeEEEeeecCCCCCCChhHHHHHHHHHHHHHHhhHH
Q 002210 355 RKLWGLVVCHHTSPRFVPFPLRYACEFLIQVFGVQVNK 392 (953)
Q Consensus 355 ~~LWGLi~~hh~~pr~~~~~~r~~~~~l~~~~~~~l~~ 392 (953)
|+++|.|.+++..|+.++......++.++.+++..|..
T Consensus 124 ~~~~Gvl~~~~~~~~~f~~~d~~~l~~la~~~a~ai~~ 161 (171)
T 3trc_A 124 GELLGILVIQQLESHHFAEEEEAFCVTLAIHLAAEIAH 161 (171)
T ss_dssp TEEEEEEEEEESSSCCCCHHHHHHHHHHHHHHHHHHHH
T ss_pred CEEEEEEEEeecCCCCCCHHHHHHHHHHHHHHHHHHHH
Confidence 89999999999999999999999999999988877743
No 107
>3d72_A Vivid PAS protein VVD; circadian, photoreceptor, blue-light, LOV, signaling protein; HET: FAD; 1.65A {Neurospora crassa} PDB: 3is2_A* 2pd8_A* 3hjk_A* 2pdr_A* 2pd7_A* 2pdt_A* 3hji_A* 3rh8_B*
Probab=98.90 E-value=5.8e-09 Score=100.05 Aligned_cols=105 Identities=11% Similarity=0.077 Sum_probs=83.0
Q ss_pred HHHhcCccEEEEc---CCCcEEecCHHHHHHhCCCcchhcCCCccccccCCc-----------HHHHHHHHHHHhcccce
Q 002210 616 LIETAAVPILAVD---ASGNVNGWNSKAAELTGLTVDQAIGTALVDLVAGDS-----------VDVVKNMLSSAFLEERN 681 (953)
Q Consensus 616 lle~~~~~I~~~D---~dg~i~~~N~a~~~l~G~~~~eliG~~~~dl~~~~~-----------~~~~~~~l~~~l~~~~~ 681 (953)
++++. ++|+++| .+|+|+++|+++++++||+.++++|+++..+.+++. .......+...+..+..
T Consensus 31 ~~~~~-~~i~~~d~~d~~g~i~~~N~a~~~l~G~~~~el~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 109 (149)
T 3d72_A 31 PVDTS-VALILCDLKQKDTPIVYASEAFLYMTGYSNAEVLGRNCRFLQSPDGMVKPKSTRKYVDSNTINTMRKAIDRNAE 109 (149)
T ss_dssp SCCTT-SCEEEEETTSTTCCEEEECHHHHHHHCCCHHHHTTSCGGGGGSTTSCCCTTCCCSSSCHHHHHHHHHHHHHTCC
T ss_pred hhcCC-ccEEEEeccCCCCcEEEECHHHHHHHCcCHHHHcCCChhHhCCccccccccccccccChHHHHHHHHHHHCCCc
Confidence 45554 8999999 799999999999999999999999999988887762 33344444555544444
Q ss_pred EEEEEEEcccCCCCCEEEEEEEEEEeecCCCCEEEEEEEEEe
Q 002210 682 VEIKLRAFGPRETSGPVILVVNACCTQDTKENVIGVCFVGQD 723 (953)
Q Consensus 682 ~e~~~~~~~~~~dG~~~~v~v~~~pi~d~~g~v~gvv~v~~D 723 (953)
...++.. .+++|..+|+.++..|+++.+|.+.+++++++|
T Consensus 110 ~~~e~~~--~~~dG~~~~~~~~~~~i~~~~g~~~~~v~~~~D 149 (149)
T 3d72_A 110 VQVEVVN--FKKNGQRFVNFLTMIPVRDETGEYRYSMGFQCE 149 (149)
T ss_dssp EEEEEEE--ECTTCCEEEEEEEEEEEECTTSSEEEEEEECCC
T ss_pred eEEEEEE--ECCCCCEEEEEEEEEEEEcCCCCEEEEEEEEeC
Confidence 4444443 467899999999999999999999999998776
No 108
>4f3l_B BMAL1B; BHLH, PAS, circadian rhythm proteins, transcription-activato; 2.27A {Mus musculus}
Probab=98.89 E-value=3.4e-09 Score=120.05 Aligned_cols=109 Identities=8% Similarity=0.037 Sum_probs=91.3
Q ss_pred hcCccEEEEcCCCcEEecCHHHHHHhCCCcchhcCCCccccccCCcHHHHHHHHHHHhc-ccceEEEEEEEcccCCCCCE
Q 002210 619 TAAVPILAVDASGNVNGWNSKAAELTGLTVDQAIGTALVDLVAGDSVDVVKNMLSSAFL-EERNVEIKLRAFGPRETSGP 697 (953)
Q Consensus 619 ~~~~~I~~~D~dg~i~~~N~a~~~l~G~~~~eliG~~~~dl~~~~~~~~~~~~l~~~l~-~~~~~e~~~~~~~~~~dG~~ 697 (953)
...+.++..|.+|+++++|+++..++||+++|++|+++.+++||+|.+.+...+...+. .+.....+++. +++||.+
T Consensus 276 ~~~~fi~~~~~dg~~~~vn~~~~~ilGY~~eEl~g~~~~~~iHpdD~~~~~~~~~~~l~~~~~~~~~eyR~--~~kdG~~ 353 (387)
T 4f3l_B 276 KSMEYVSRHAIDGKFVFVDQRATAILAYLPQELLGTSCYEYFHQDDIGHLAECHRQVLQTREKITTNCYKF--KIKDGSF 353 (387)
T ss_dssp CCCEEEEEECTTSBEEEECTHHHHHHCCCHHHHTTSBGGGTBCHHHHHHHHHHHHHHTTCSSCEECCCEEE--ECTTSCE
T ss_pred CCceEEEEECCCCEEEEECCCcccccCCCHHHHcCCcHHHeeCHHHHHHHHHHHHHHHhcCCCeeeEEEEE--EccCCCE
Confidence 35567888999999999999999999999999999999999999999988888888873 33334445554 5679999
Q ss_pred EEEEEEEEEeecC-CCCEEEEEEEEEecchhHH
Q 002210 698 VILVVNACCTQDT-KENVIGVCFVGQDITGQKL 729 (953)
Q Consensus 698 ~~v~v~~~pi~d~-~g~v~gvv~v~~DITerk~ 729 (953)
+|+..++.++++. +|++.+++++.+|||+||.
T Consensus 354 vWv~~~~~~~~~~~~g~~~~ivg~~~dIT~Rk~ 386 (387)
T 4f3l_B 354 ITLRSRWFSFMNPWTKEVEYIVSTNTVVLANVL 386 (387)
T ss_dssp EEEEEEEEEEEETTTTEEEEEEEEEEECC----
T ss_pred EEEEEEEEEEECCCCCCEEEEEEEEEEcchhhc
Confidence 9999999999987 7899999999999999974
No 109
>4f3l_A Mclock, circadian locomoter output cycles protein kaput; BHLH, PAS, circadian rhythm proteins, transcription-activato; 2.27A {Mus musculus}
Probab=98.88 E-value=3.2e-09 Score=119.18 Aligned_cols=110 Identities=8% Similarity=-0.056 Sum_probs=95.6
Q ss_pred cCccEEEEcCCCcEEecCHHHHHHhCCCcchhcCCCccccccCCcHHHHHHHHHHHhcccceEEEEEEEcccCCCCCEEE
Q 002210 620 AAVPILAVDASGNVNGWNSKAAELTGLTVDQAIGTALVDLVAGDSVDVVKNMLSSAFLEERNVEIKLRAFGPRETSGPVI 699 (953)
Q Consensus 620 ~~~~I~~~D~dg~i~~~N~a~~~l~G~~~~eliG~~~~dl~~~~~~~~~~~~l~~~l~~~~~~e~~~~~~~~~~dG~~~~ 699 (953)
....++..|.+|+++++|+++..++||+++|++|+++.+++||++.+.+...+..++..+.....+++. ++++|..+|
T Consensus 250 ~~~f~~~~~~dg~~~~vn~~~~~ilGY~~eEl~g~~~~~~iHpdD~~~~~~~~~~~l~~g~~~~~eyR~--~~kdG~~vW 327 (361)
T 4f3l_A 250 NEEFTSRHSLEWKFLFLDHRAPPIIGYLPFEVLGTSGYDYYHVDDLENLAKCHEHLMQYGKGKSCYYRF--LTKGQQWIW 327 (361)
T ss_dssp CCEEEEEECTTSBEEEECTTSHHHHCCCHHHHTTSBGGGGBCHHHHHHHHHHHHHHHHHSEEECCCEEE--ECTTSEEEE
T ss_pred cceeEEEEcCCceEEEECChhhhhhCcCHHHHcCCCHHHeECHHHHHHHHHHHHHHHhCCCcceEEEEE--EecCCCEEE
Confidence 456788899999999999999999999999999999999999999998888888887555444444444 567999999
Q ss_pred EEEEEEEeecC-CCCEEEEEEEEEecchhHHHH
Q 002210 700 LVVNACCTQDT-KENVIGVCFVGQDITGQKLVM 731 (953)
Q Consensus 700 v~v~~~pi~d~-~g~v~gvv~v~~DITerk~~E 731 (953)
+..++.|+++. +|++.+++++.+|||+++..+
T Consensus 328 v~~~~~~v~~~~~g~~~~iv~~~~dITe~~~~~ 360 (361)
T 4f3l_A 328 LQTHYYITYHQWNSRPEFIVCTHTVVSYAEVRA 360 (361)
T ss_dssp EEEEEEEEECTTTCCEEEEEEEEEECCHHHHHH
T ss_pred EEEEEEEEEcCCCCCeeEEEEEEEECChhHhhc
Confidence 99999999997 799999999999999998754
No 110
>1ykd_A Adenylate cyclase; GAF domain, bound cyclic AMP ligand, lyase; HET: CMP; 1.90A {Anabaena SP}
Probab=98.88 E-value=2.4e-07 Score=105.17 Aligned_cols=324 Identities=10% Similarity=0.099 Sum_probs=184.2
Q ss_pred HHHHHHHHHhccCCCCCHHH----HHHHHHHHHHhhhCCCeEEEEeecCCCCceEEEeecCCCCCCccCCCCCCCCccHH
Q 002210 199 KLAAKAISRLQSLPSGNISL----LCDVLVNEVSDLTGYDRVMVYKFHEDEHGEVVAECRRPDLEPYLGFHYPATDIPQA 274 (953)
Q Consensus 199 ~~~~~~~~~l~~~~~~~~~~----l~~~~v~~vr~~~g~DRVmiY~F~~d~~G~viaE~~~~~~~~~lg~~~pa~dip~~ 274 (953)
+.+.+++..+. +.+++. +++.+++.+++++|+|++.||.++++.. +....+....-....+..+|... --
T Consensus 9 ~~l~~~~~~l~---~~~l~~~l~~~l~~i~~~~~~~~~a~~~~i~l~d~~~~-~l~~~~~~g~~~~~~~~~~~~~~--g~ 82 (398)
T 1ykd_A 9 QIVHQTLSMLD---SHGFENILQEMLQSITLKTGELLGADRTTIFLLDEEKQ-ELWSIVAAGEGDRSLEIRIPADK--GI 82 (398)
T ss_dssp HHHHHHHHHHT---TSCHHHHHHHHHHHHHHHHHHHHTEEEEEEEEEETTTT-EEEEEEECCGGGCCCCCEEETTS--HH
T ss_pred HHHHHHHHHHH---hccHHHHHHHHHHHHHHHHHHHhCCceEEEEEEECCCC-eEEEEeecCCCCccceeecCCCC--ch
Confidence 33344444443 346655 5566666699999999999999999864 44444332221234466666542 23
Q ss_pred HHHHHHhCCceEeecCCCCCceeeeCCCCCCccccCCccccCCChhHHHHhhhcCCeeEEEEEEEEeCCcccccccccCC
Q 002210 275 SRFLIMKNKVRMICDCLAPPVKVIQDKKLDQPLSLCGSTLRAPHGCHARYMENMGSIASLVMSVTINEAEDELDNDQEQG 354 (953)
Q Consensus 275 ar~ly~~n~~r~i~D~~~~~~~l~~~~~~~~~ldl~~s~lr~~s~~h~~yl~nmgv~asl~~~i~~~~~~~~~~~~~~~~ 354 (953)
+...+..++.-.|+|+...+. |..-+.+.......++++.|++||+.. +
T Consensus 83 ~g~v~~~~~~v~i~d~~~~~~-------------------~~~~~~~~~~~~~~~~~s~l~vPl~~~------------~ 131 (398)
T 1ykd_A 83 AGEVATFKQVVNIPFDFYHDP-------------------RSIFAQKQEKITGYRTYTMLALPLLSE------------Q 131 (398)
T ss_dssp HHHHHHHCCCEEECSCGGGSG-------------------GGHHHHHHHHHHCCCCSCEEEEEEECS------------S
T ss_pred hhhhhccCcEEeccchhcccc-------------------hhhcccccCcccCcCCceEEEEEEECC------------C
Confidence 455667777777888533210 101133444455778999999999852 2
Q ss_pred CceeEEEeeecC---------------CCCCCChhHHHHHHHHHHHHHHhhHHHHHHHHHH-HHHHHHHHHHHHHHhhc-
Q 002210 355 RKLWGLVVCHHT---------------SPRFVPFPLRYACEFLIQVFGVQVNKEVELSAQL-REKHILRTQTVLCDMLL- 417 (953)
Q Consensus 355 ~~LWGLi~~hh~---------------~pr~~~~~~r~~~~~l~~~~~~~l~~~~~~~~~~-~~~~~~~~~~~~~~~~~- 417 (953)
|++||.|.+++. .++.++......++.++..++..|......+... ..+......+....+..
T Consensus 132 g~~iGvl~l~~~~~~~~~~~~~l~~~~~~~~f~~~d~~~l~~~a~~~~~al~~~~l~~~~~~~~~~l~~L~~~~~~l~~~ 211 (398)
T 1ykd_A 132 GRLVAVVQLLNKLKPYSPPDALLAERIDNQGFTSADEQLFQEFAPSIRLILESSRSFYIATQKQRAAAAMMKAVKSLSQS 211 (398)
T ss_dssp CCEEEEEEEEEEBCSCCCTTCCHHHHBCTTCCCHHHHHHGGGTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred CCEEEEEEEeccCCcccccccccccccccCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 899999999998 6899999999999999998888876433222111 11111122222222222
Q ss_pred cCCCCccccC-CcchhhhccCCeEEEEEC----CeEEEeCC----------CCCHHHHHHHHHHHHhhcCCCeEEEe-cc
Q 002210 418 RDSPVGIVTQ-TPNVMDLVKCDGAALYYR----GKLWLLGV----------TPTEEQIKDIAEWLLEYHRGSTGLST-DS 481 (953)
Q Consensus 418 ~~~~~~~~~~-~~~l~~l~~~dg~a~~~~----~~~~~~G~----------~p~~~~~~~l~~~l~~~~~~~~~~~t-~~ 481 (953)
......+... ...+..+++||+++|+.- +..+.... .|.. ..+..|.... +. +++.. |.
T Consensus 212 ~~dl~~~l~~i~~~~~~~~~~~~~~i~l~d~~~~~l~~~~~~~~~~~~~~~~~~~---~~~~~~v~~~-~~-~~~i~~d~ 286 (398)
T 1ykd_A 212 SLDLEDTLKRVMDEAKELMNADRSTLWLIDRDRHELWTKITQDNGSTKELRVPIG---KGFAGIVAAS-GQ-KLNIPFDL 286 (398)
T ss_dssp CCCHHHHHHHHHHHHHHHTTEEEEEEEEEETTTTEEEEEEECSSSCEEEEEEETT---SHHHHHHHHH-CC-CEEECSCG
T ss_pred cCCHHHHHHHHHHHHHHHhCcCeEEEEEEECCCCEEEEEEecCCCceeeeeccCC---CchhhHHhcc-CC-eEEecccc
Confidence 1122222211 246777889998887752 23433211 1111 2455665544 22 34444 43
Q ss_pred cCcCCCCCc----cccccccceEEEEEeCC-C-C---EEEEeccCcccEEeccCCCCCCCCCCCCccccccccccceeee
Q 002210 482 LVEAGYPGA----LALGDAVCGIAAVKITS-K-D---FLFWFRSHTAKEIKWGGAKHDSGGKDGGRKMHPRSSFKAFLEV 552 (953)
Q Consensus 482 l~~~~~p~~----~~~~~~~~g~~~~~i~~-~-~---~l~wfR~e~~~~v~WaG~p~~~~~~~dg~~l~PR~SF~~w~e~ 552 (953)
-.+-.|... ...+-....++++||-. + . .+..++... .| -.|+.++..|.+.
T Consensus 287 ~~~~~~~~~~~~~~~~~~~~~s~l~vPl~~~~~~~iGvl~l~~~~~-----------------~~--~~~~~~~~~~~~~ 347 (398)
T 1ykd_A 287 YDHPDSATAKQIDQQNGYRTCSLLCMPVFNGDQELIGVTQLVNKKK-----------------TG--EFPPYNPETWPIA 347 (398)
T ss_dssp GGSTTCHHHHHHHHHHTCCCCCEEEEEEECSSSCEEEEEEEEEECC-----------------SS--CCCCCCGGGTTCC
T ss_pred ccCcccCcccchhhhcCCeeeeEEEEeeecCCCCEEEEEEEEecCC-----------------cc--ccccccccccccc
Confidence 322112111 00122356688999862 2 1 121221110 11 1245566789888
Q ss_pred eeccccCchhhHHHHHHHHHHHHHHHhHHHH
Q 002210 553 VKQRSLPWEDVEMDAIHSLQLILRGSLQDEV 583 (953)
Q Consensus 553 v~g~s~pW~~~ei~aa~~L~~il~~~~~~~~ 583 (953)
..+...+|...++..+..+...+..+++..+
T Consensus 348 ~~~~~~~f~~~d~~ll~~la~~~a~al~na~ 378 (398)
T 1ykd_A 348 PECFQASFDRNDEEFMEAFNIQAGVALQNAQ 378 (398)
T ss_dssp CGGGCCCCCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ccccCCCCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 8888889999999999988777776666554
No 111
>3e0y_A Conserved domain protein; APC87688.2, geobacter sulfurreducens PCA, structural genomics, PSI-2, midwest center for structural G MCSG; 3.10A {Geobacter sulfurreducens}
Probab=98.87 E-value=4e-08 Score=97.53 Aligned_cols=149 Identities=10% Similarity=0.008 Sum_probs=105.9
Q ss_pred HHHHHHhccCCCCCHHHHHHHHHHHHHhhhCCCeEEEEeecCCCCceEEEeecCCCCCCccCCCCCCCCccHHHHHHHHh
Q 002210 202 AKAISRLQSLPSGNISLLCDVLVNEVSDLTGYDRVMVYKFHEDEHGEVVAECRRPDLEPYLGFHYPATDIPQASRFLIMK 281 (953)
Q Consensus 202 ~~~~~~l~~~~~~~~~~l~~~~v~~vr~~~g~DRVmiY~F~~d~~G~viaE~~~~~~~~~lg~~~pa~dip~~ar~ly~~ 281 (953)
.++...+.+ +.+++++++.+++.+.+++|+|++.||.+++++. .+.+ +...+-...-+..+|-.+-+ ....+..
T Consensus 18 ~~i~~~l~~--~~~~~~~l~~i~~~~~~~~~~~~~~i~l~d~~~~-~~~~-~~g~~~~~~~~~~~~~~~~~--~~~~~~~ 91 (181)
T 3e0y_A 18 EEISMLVSS--DFDLPEVLQHVTAKVATQLKVSVCNIYLREGDEV-VLAA-THGFDPAFIGKIRIKIGDGI--TGSVARD 91 (181)
T ss_dssp HHHHHHHST--TSCHHHHHHHHHHHHHHHTTCSCEEEEEEETTEE-EEEE-EESSCGGGTTTCEEETTTSS--HHHHHHH
T ss_pred HHHHHHHhh--cCCHHHHHHHHHHHHHHHhCCCeEEEEEEcCCCc-eEEE-ecCCCHHHhccccccCCCCe--eeehhhc
Confidence 455666776 6799999999999999999999999999999876 3333 33322222233344443322 3456677
Q ss_pred CCceEeecCCCCCceeeeCCCCCCccccCCccccCCChhHHHHhhhcCCeeEEEEEEEEeCCcccccccccCCCceeEEE
Q 002210 282 NKVRMICDCLAPPVKVIQDKKLDQPLSLCGSTLRAPHGCHARYMENMGSIASLVMSVTINEAEDELDNDQEQGRKLWGLV 361 (953)
Q Consensus 282 n~~r~i~D~~~~~~~l~~~~~~~~~ldl~~s~lr~~s~~h~~yl~nmgv~asl~~~i~~~~~~~~~~~~~~~~~~LWGLi 361 (953)
++..+|.|+...|-. .+...+...|+++.+++||+.+ |+++|.|
T Consensus 92 ~~~~~i~d~~~~~~~-----------------------~~~~~~~~~~~~s~l~vPl~~~-------------~~~iGvl 135 (181)
T 3e0y_A 92 GQYISLSRASQDPRY-----------------------RYFPELQEEKYNSMLSFPIGDK-------------KEVYGVI 135 (181)
T ss_dssp CCCEEEEEECCCCCC--------------------------------CEEEEEEEEEECS-------------SCEEEEE
T ss_pred CCeEEecCcccCccc-----------------------cccccccccCcceEEEEEEEeC-------------CeEEEEE
Confidence 888888885443321 0111244678999999999977 8999999
Q ss_pred eeecCCCCCCChhHHHHHHHHHHHHHHhhHH
Q 002210 362 VCHHTSPRFVPFPLRYACEFLIQVFGVQVNK 392 (953)
Q Consensus 362 ~~hh~~pr~~~~~~r~~~~~l~~~~~~~l~~ 392 (953)
.+++..|+.++......++.++..++..|..
T Consensus 136 ~~~~~~~~~f~~~~~~~l~~la~~~a~al~~ 166 (181)
T 3e0y_A 136 NLNTTSIRSFHEDEIYFVSIIANLILTAIKL 166 (181)
T ss_dssp EEEESSCCCCCHHHHHHHHHHHHHHHHHHHH
T ss_pred EEeeCCCCCCCHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999988887753
No 112
>3ci6_A Phosphoenolpyruvate-protein phosphotransferase; PEP-phosphotransferase, GAF domain, structura genomics, PSI-2, protein structure initiative; HET: MSE P4G; 1.55A {Acinetobacter SP}
Probab=98.87 E-value=9.2e-08 Score=93.43 Aligned_cols=156 Identities=12% Similarity=0.085 Sum_probs=110.2
Q ss_pred HHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHhhhCCCeEEEEeecCCCCceEEEeecCCCCCCccCCCCCCCCccHHHH
Q 002210 197 SYKLAAKAISRLQSLPSGNISLLCDVLVNEVSDLTGYDRVMVYKFHEDEHGEVVAECRRPDLEPYLGFHYPATDIPQASR 276 (953)
Q Consensus 197 ~~~~~~~~~~~l~~~~~~~~~~l~~~~v~~vr~~~g~DRVmiY~F~~d~~G~viaE~~~~~~~~~lg~~~pa~dip~~ar 276 (953)
.+..+.++...+.+ +.+++++++.+++.+.+++|+|++.||-++++...-.+.-+...+-...-+..+|..+ .-..
T Consensus 8 ~l~~l~~~~~~l~~--~~~~~~~l~~~~~~~~~~~~~~~~~i~l~~~~~~~l~~~~~~g~~~~~~~~~~~~~~~--~~~~ 83 (171)
T 3ci6_A 8 QLDTLRRIVQEINS--SVSLHDSLDIMVNQVADAMKVDVCSIYLLDERNQRYLLMASKGLNPESVGHVSLQLSE--GLVG 83 (171)
T ss_dssp HHHHHHHHHHHHHT--CSSHHHHHHHHHHHHHHHHTCSEEEEEEEETTTTEEEEEEEESSCGGGTTTCEEETTS--HHHH
T ss_pred HHHHHHHHHHHHhc--CCCHHHHHHHHHHHHHHHhCCCeEEEEEEeCCCCEEEEEeccCCCcccccceeeeccC--Ceeh
Confidence 34455666777777 6799999999999999999999999999998865544443333322223334455432 2455
Q ss_pred HHHHhCCceEeecCCCCCceeeeCCCCCCccccCCccccCCChhHHHHhhhcCCeeEEEEEEEEeCCcccccccccCCCc
Q 002210 277 FLIMKNKVRMICDCLAPPVKVIQDKKLDQPLSLCGSTLRAPHGCHARYMENMGSIASLVMSVTINEAEDELDNDQEQGRK 356 (953)
Q Consensus 277 ~ly~~n~~r~i~D~~~~~~~l~~~~~~~~~ldl~~s~lr~~s~~h~~yl~nmgv~asl~~~i~~~~~~~~~~~~~~~~~~ 356 (953)
..+..++...+.|+...|-. .+.......|+++.+++||+.+ |+
T Consensus 84 ~~~~~~~~~~~~d~~~~~~~-----------------------~~~~~~~~~~~~s~l~vPl~~~-------------~~ 127 (171)
T 3ci6_A 84 LVGQREEIVNLENASKHERF-----------------------AYLPETGEEIYNSFLGVPVMYR-------------RK 127 (171)
T ss_dssp HHHHHTSCEEESSGGGSTTC--------------------------------CCCEEEEEEEEET-------------TE
T ss_pred hhhccCceEEecCCCcCcch-----------------------hccccccccccceEEEEeEEEC-------------CE
Confidence 66777888788874333210 0111136678999999999977 99
Q ss_pred eeEEEeeecCCCCCCChhHHHHHHHHHHHHHHhhHH
Q 002210 357 LWGLVVCHHTSPRFVPFPLRYACEFLIQVFGVQVNK 392 (953)
Q Consensus 357 LWGLi~~hh~~pr~~~~~~r~~~~~l~~~~~~~l~~ 392 (953)
++|.|.+.+..++.++...+..++.++..++..|..
T Consensus 128 ~~Gvl~l~~~~~~~f~~~~~~~l~~la~~~a~al~~ 163 (171)
T 3ci6_A 128 VMGVLVVQNKQPQDFSEAAESFLVTLCAQLSGVIAH 163 (171)
T ss_dssp EEEEEEEEESSCCCCCHHHHHHHHHHHHHHHHHHHH
T ss_pred EEEEEEEecCCCCCCCHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999988877743
No 113
>2vlg_A Sporulation kinase A; histidine kinase, two-component regulatory system, two-component signal transduction, transferase, phosphorylation, SCOD; 1.7A {Bacillus subtilis}
Probab=98.86 E-value=5.5e-09 Score=96.18 Aligned_cols=93 Identities=12% Similarity=0.087 Sum_probs=68.0
Q ss_pred HHHHhcCccEEEEcCCCcEEecCHHHHHHhCCCcchhcCCCccccccCCcHHHHHHHHHHHhcccceEEEEEEEcccCCC
Q 002210 615 RLIETAAVPILAVDASGNVNGWNSKAAELTGLTVDQAIGTALVDLVAGDSVDVVKNMLSSAFLEERNVEIKLRAFGPRET 694 (953)
Q Consensus 615 ~lle~~~~~I~~~D~dg~i~~~N~a~~~l~G~~~~eliG~~~~dl~~~~~~~~~~~~l~~~l~~~~~~e~~~~~~~~~~d 694 (953)
.++++++++|+++|.+|+|+|+|+++++++||++++++|+++.+++||++.+.+...+.. .......+++. .++|
T Consensus 3 ~lle~~~d~i~v~d~~G~i~yvn~~~~~~lGy~~~el~G~~~~~~ihp~D~~~~~~~~~~---~~~~~~~e~r~--~~kd 77 (111)
T 2vlg_A 3 FPLQTKTDIHAVLASNGRIIYISANSKLHLGYLQGEMIGSFLKTFLHEEDQFLVESYFYN---EHHLMPCTFRF--IKKD 77 (111)
T ss_dssp ------CCEEEEECTTSBEEEECTTHHHHHSCCHHHHTTSBGGGGBCGGGHHHHHHHHHC---SCCSSCEEEEE--ECTT
T ss_pred chhhcCCCEEEEEcCCCeEEEEChHHHHHhCCCHHHHcCCcHHHeECHhHHHHHHHHHhc---cCCCccEEEEE--EcCC
Confidence 478999999999999999999999999999999999999999999999998876655432 12212233332 5679
Q ss_pred CCEEEEEEEEEEeecCCC
Q 002210 695 SGPVILVVNACCTQDTKE 712 (953)
Q Consensus 695 G~~~~v~v~~~pi~d~~g 712 (953)
|+.+|+.++..++++..+
T Consensus 78 G~~~wve~~~~~v~~~~~ 95 (111)
T 2vlg_A 78 HTIVWVEAAVEIVTTRAE 95 (111)
T ss_dssp SCEEEEEEEEEEC-----
T ss_pred CCEEEEEEEEEEEecccC
Confidence 999999999999988654
No 114
>2qyb_A Membrane protein, putative; GAF domain, domain of putative membrane protein, PSI-2, MCSG structural genomics; 2.40A {Geobacter sulfurreducens pca}
Probab=98.84 E-value=3e-08 Score=99.06 Aligned_cols=143 Identities=12% Similarity=0.047 Sum_probs=105.9
Q ss_pred CCCHHHHHHHHHHHHHhhhCCCeEEEEeecCCCCceEEEeecCCCCCCccCCCCCCCCccHHHHHHHHhCCceEeecCCC
Q 002210 213 SGNISLLCDVLVNEVSDLTGYDRVMVYKFHEDEHGEVVAECRRPDLEPYLGFHYPATDIPQASRFLIMKNKVRMICDCLA 292 (953)
Q Consensus 213 ~~~~~~l~~~~v~~vr~~~g~DRVmiY~F~~d~~G~viaE~~~~~~~~~lg~~~pa~dip~~ar~ly~~n~~r~i~D~~~ 292 (953)
+.+++++++.+++.+.+++|+|++.||.+++++.-.+++-.-.+....--....|..+ ......+..++..++.|+..
T Consensus 15 ~~~~~~~l~~i~~~~~~~~~~~~~~i~l~~~~~~l~~~a~~g~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~v~d~~~ 92 (181)
T 2qyb_A 15 TLDLQIIMDDLLNLLLKEFKLDLAVIRLVDEKGVLRVRSYSGKGIAGIAGKDWEPEIE--TYIGEAFLSNRLQFVNDTQY 92 (181)
T ss_dssp HHHHHHHHHHHHHHHHHHSSCSEEEEEEECTTSCEEEEEEEESCTTSTTCSCBCCCTT--SHHHHHHHHTSCEEESCGGG
T ss_pred ccCHHHHHHHHHHHHHHHhCCcEEEEEEECCCCCEEEEEEeCCCcceecccccccCCC--CchhhhhhcCCCEEecChhc
Confidence 4589999999999999999999999999955554445554332221100122334222 24556677788888888432
Q ss_pred CCceeeeCCCCCCccccCCccccCCChhHHHHhhhcCCeeEEEEEEEEeCCcccccccccCCCc-eeEEEeeec-CCCCC
Q 002210 293 PPVKVIQDKKLDQPLSLCGSTLRAPHGCHARYMENMGSIASLVMSVTINEAEDELDNDQEQGRK-LWGLVVCHH-TSPRF 370 (953)
Q Consensus 293 ~~~~l~~~~~~~~~ldl~~s~lr~~s~~h~~yl~nmgv~asl~~~i~~~~~~~~~~~~~~~~~~-LWGLi~~hh-~~pr~ 370 (953)
.+ .+...+++...|+++.+++||..+ ++ +||.|.+++ ..|+.
T Consensus 93 ~~-----------------------~~~~~~~~~~~g~~s~~~vPl~~~-------------~~~~~GvL~l~~~~~~~~ 136 (181)
T 2qyb_A 93 MT-----------------------KPLTRELMQKEGIKSFAHIPISRK-------------GEPPFGILSVFSRTIVGL 136 (181)
T ss_dssp CS-----------------------CHHHHHHHHHTTCCEEEEEEECCT-------------TSCCCEEEEEEESSCSSC
T ss_pred CC-----------------------chhhHHHHHhcCcceEEEEEEEeC-------------CCeEEEEEEEecCCCCCC
Confidence 21 156777888999999999999876 78 999999999 67999
Q ss_pred CChhHHHHHHHHHHHHHHhhHHH
Q 002210 371 VPFPLRYACEFLIQVFGVQVNKE 393 (953)
Q Consensus 371 ~~~~~r~~~~~l~~~~~~~l~~~ 393 (953)
++.+....++.++.+++..|...
T Consensus 137 f~~~d~~lL~~la~~~a~al~~a 159 (181)
T 2qyb_A 137 FNEPFLNLLESLAGQLAQAVKIV 159 (181)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHHC
T ss_pred CCHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999998888644
No 115
>2e4s_A CAMP and CAMP-inhibited CGMP 3',5'-cyclic phosphodiesterase 10A; GAF domain, structural genomics, NPPSFA; HET: MSE CMP; 2.10A {Homo sapiens} PDB: 2zmf_A*
Probab=98.84 E-value=3.7e-08 Score=98.80 Aligned_cols=157 Identities=9% Similarity=0.068 Sum_probs=113.7
Q ss_pred HHHHHHHHHHHhccCCC-CCHHHHHHHHHHHHHhhhCCCeEEEEeecCCCCceEEEeecCCC-------C-CCccCCCCC
Q 002210 197 SYKLAAKAISRLQSLPS-GNISLLCDVLVNEVSDLTGYDRVMVYKFHEDEHGEVVAECRRPD-------L-EPYLGFHYP 267 (953)
Q Consensus 197 ~~~~~~~~~~~l~~~~~-~~~~~l~~~~v~~vr~~~g~DRVmiY~F~~d~~G~viaE~~~~~-------~-~~~lg~~~p 267 (953)
..+.+.++...|.+ + .+++++++.+++.+++++|+|++.||-++++...-+ ......+ + ....+.++|
T Consensus 11 ~~~~L~~~~~~l~~--~~~d~~~~l~~i~~~~~~~~~a~~~~i~l~d~~~~~l~-~~~~~~~~~~~~~~~~~~~~~~~~~ 87 (189)
T 2e4s_A 11 LNDFLLDVSKTYFD--NIVAIDSLLEHIMIYAKNLVNADRCALFQVDHKNKELY-SDLFDIGEEKEGKPVFKKTKEIRFS 87 (189)
T ss_dssp HHHHHHHHHHHHHH--CSSCHHHHHHHHHHHHHHHHTEEEEEEEEEETTTTEEE-EEEEEEEEEETTEEEEEECCCCEEE
T ss_pred HHHHHHHHHHHHHh--cccCHHHHHHHHHHHHHHHhCCCeEEEEEEECCCCEEE-EEEeccCccccccccccCCcceEee
Confidence 34455566666655 4 499999999999999999999999999998864333 2221111 1 123455555
Q ss_pred CCCccHHHHHHHHhCCceEeecCCCCCceeeeCCCCCCccccCCccccCCChhHHHHhhhcCCeeEEEEEEEEeCCcccc
Q 002210 268 ATDIPQASRFLIMKNKVRMICDCLAPPVKVIQDKKLDQPLSLCGSTLRAPHGCHARYMENMGSIASLVMSVTINEAEDEL 347 (953)
Q Consensus 268 a~dip~~ar~ly~~n~~r~i~D~~~~~~~l~~~~~~~~~ldl~~s~lr~~s~~h~~yl~nmgv~asl~~~i~~~~~~~~~ 347 (953)
.. ..-+...+..++.-+|.|+...| . .+.+.......++++.|++||+.+
T Consensus 88 ~~--~~~~~~v~~~~~~~~i~d~~~~~-------~---------------~~~~~~~~~~~~~~s~l~vPl~~~------ 137 (189)
T 2e4s_A 88 IE--KGIAGQVARTGEVLNIPDAYADP-------R---------------FNREVDLYTGYTTRNILCMPIVSR------ 137 (189)
T ss_dssp TT--SHHHHHHHHHCCCEEESCGGGST-------T---------------CCTHHHHHHCCCCCCEEEEEEEET------
T ss_pred CC--CcHHHHHHHhCCEEEecCCCcCc-------c---------------cChhhccccCCccceEEEEEeccC------
Confidence 43 23456677788888888844332 1 023445667899999999999977
Q ss_pred cccccCCCceeEEEeeecCCCC-CCChhHHHHHHHHHHHHHHhhHHH
Q 002210 348 DNDQEQGRKLWGLVVCHHTSPR-FVPFPLRYACEFLIQVFGVQVNKE 393 (953)
Q Consensus 348 ~~~~~~~~~LWGLi~~hh~~pr-~~~~~~r~~~~~l~~~~~~~l~~~ 393 (953)
|+++|.|.+++..++ .++......++.++.++++.|...
T Consensus 138 -------~~~iGvl~l~~~~~~~~f~~~d~~ll~~la~~~a~ai~na 177 (189)
T 2e4s_A 138 -------GSVIGVVQMVNKISGSAFSKTDENNFKMFAVFCALALHCA 177 (189)
T ss_dssp -------TEEEEEEEEEEETTSSSCCHHHHHHHHHHHHHHHHHHHHH
T ss_pred -------CeEEEEEEEEeCCCCCCCCHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999866 899999999999999888877543
No 116
>2ykf_A Pdtas, probable sensor histidine kinase pdtas; transferase, two-component system, GAF domain, PAS domain; 2.00A {Mycobacterium tuberculosis} PDB: 2ykh_A
Probab=98.33 E-value=3.6e-10 Score=123.58 Aligned_cols=159 Identities=12% Similarity=0.066 Sum_probs=106.7
Q ss_pred EEEEEEEeecCCCCEEEEEEEEE-ecchh---HHHHHHHHHHHHHHHHHHh-----------------CCCCCCCCeEee
Q 002210 700 LVVNACCTQDTKENVIGVCFVGQ-DITGQ---KLVMDKYTRIQGDYVGIVS-----------------SPSALIPPIFMT 758 (953)
Q Consensus 700 v~v~~~pi~d~~g~v~gvv~v~~-DITer---k~~E~~L~~se~~~~~i~e-----------------~~~~li~~I~~~ 758 (953)
+..+..|+++ +|+++|++++.+ |+|++ +..|....+....+..+++ ++++ ||+++
T Consensus 111 v~~~~~Pi~~-~g~vigvl~~~~~di~~~~~~~~~e~~~~~~~~~L~~mi~~~~~~~~~~~~~~~~~~~~~d---GIivv 186 (305)
T 2ykf_A 111 HSVEVSPVRF-GDQVVAVLTRHQPELAARRRSGHLETAYRLCATDLLRMLAEGTFPDAGDVAMSRSSPRAGD---GFIRL 186 (305)
Confidence 6778999998 789999999999 99987 4556665666666666664 5555 89999
Q ss_pred cCCccEEehhHHHHHHhC---CChhhhhcccccccccccccccccccCcchHHHHHHHHHHHhcC-CCcceEEEEEEccC
Q 002210 759 DEDGRCLEWNDGMEKLSG---LKREEAIERMLIGEVFTVKNFGCRVKNHDTLTKLRIVMNKVISG-QDADKILFGFFDQQ 834 (953)
Q Consensus 759 D~~G~i~~~N~a~~~l~G---~~~eeliGk~~~~~~~~~~~~~~~l~~~~~~~~~~~~l~~~~~g-~~~~~~e~~~~~kd 834 (953)
|.+|+|+++|+++++++| ++ ++++|+++.+ +++.... ...... .+...+...+.+ +.....++. ..
T Consensus 187 D~~G~Ii~~N~aA~~ll~~lG~~-~~~iGk~l~e-l~~~~~~--~~~~~~---~~~~~l~~vl~~~~~~~~~ei~---~~ 256 (305)
T 2ykf_A 187 DVDGVVSYASPNALSAYHRMGLT-TELEGVNLID-ATRPLIS--DPFEAH---EVDEHVQDLLAGDGKGMRMEVD---AG 256 (305)
Confidence 999999999999999985 44 7889998763 3332100 000000 011111122233 222222211 12
Q ss_pred CCEEEEEEEEEEeecCCCCEEEEEEEEEeccHHHHHHHHHH
Q 002210 835 GKYVEALLSANKRTNAEGKISGILCFLHVASPELQYALQVQ 875 (953)
Q Consensus 835 G~~~~v~~s~~pi~d~~G~i~g~v~v~~DITerK~~e~elq 875 (953)
| .++.++..|+.+ +|++.|++.+++|||+.++.+.+++
T Consensus 257 ~--~~l~v~~~Pi~~-~g~~~G~Vvv~rDITE~~~lE~eL~ 294 (305)
T 2ykf_A 257 G--ATVLLRTLPLVV-AGRNVGAAILIRDVTEVKRRDRALI 294 (305)
Confidence 3 567778889886 5888899999999999998886654
No 117
>3ibj_A CGMP-dependent 3',5'-cyclic phosphodiesterase; PDE2A, GAF-domains, allosteric regulation hydrolase, membrane; 3.02A {Homo sapiens}
Probab=98.83 E-value=4.4e-07 Score=110.82 Aligned_cols=205 Identities=10% Similarity=0.031 Sum_probs=127.4
Q ss_pred HHHHHHHHHHhccCCCCCHHHHHHHHHHHHHhhhCCCeEEEEeecCCCCceEEEeecCCCCCCccCCCCCCCCccHHHHH
Q 002210 198 YKLAAKAISRLQSLPSGNISLLCDVLVNEVSDLTGYDRVMVYKFHEDEHGEVVAECRRPDLEPYLGFHYPATDIPQASRF 277 (953)
Q Consensus 198 ~~~~~~~~~~l~~~~~~~~~~l~~~~v~~vr~~~g~DRVmiY~F~~d~~G~viaE~~~~~~~~~lg~~~pa~dip~~ar~ 277 (953)
.+.+.+++..|. +.+++++++++++.+++++|+||+.||.|++|+..-++..+.....+. ..++|-.- -...
T Consensus 14 ~~~L~~i~~~ls---~ldl~~ll~~il~~l~~~l~ad~~~i~L~d~~~~~l~~~~~~g~~~~~--~~~~p~~G---i~g~ 85 (691)
T 3ibj_A 14 DRKILQLCGELY---DLDASSLQLKVLQYLQQETRASRCCLLLVSEDNLQLSCKVIGDKVLGE--EVSFPLTG---CLGQ 85 (691)
T ss_dssp HHHHHHHHHHCC---CSSHHHHHHHHHHHHHHHTTBSCEEEEEECTTSSEEEEEEETTEEEEE--EEEEECCS---SSHH
T ss_pred HHHHHHHHHHHH---hccHHHHHHHHHHHHHHHhCCCEEEEEEEECCCCeEEEEecCCCcccc--ceecCCcc---HHHH
Confidence 344556666665 569999999999999999999999999999986543322222211111 12344331 2334
Q ss_pred HHHhCCceEeecCCCCCceeeeCCCCCCccccCCccccCCChhHHHHhhhcCCeeEEEEEEEEeCCcccccccccCCCce
Q 002210 278 LIMKNKVRMICDCLAPPVKVIQDKKLDQPLSLCGSTLRAPHGCHARYMENMGSIASLVMSVTINEAEDELDNDQEQGRKL 357 (953)
Q Consensus 278 ly~~n~~r~i~D~~~~~~~l~~~~~~~~~ldl~~s~lr~~s~~h~~yl~nmgv~asl~~~i~~~~~~~~~~~~~~~~~~L 357 (953)
.+..++.-.|+|+...| ..+..+....+++|.|++||+.+ .+|++
T Consensus 86 v~~~~~pv~i~d~~~~~------------------------~~~~~~~~~~~~~S~L~vPI~~~-----------~~g~v 130 (691)
T 3ibj_A 86 VVEDKKSIQLKDLTSED------------------------VQQLQSMLGCELQAMLCVPVISR-----------ATDQV 130 (691)
T ss_dssp HHHHCCCEEGGGSCHHH------------------------HHHHHHHHTSCCSCEEEEEEECS-----------SSCSE
T ss_pred HHHHCCeEEeccchhcc------------------------ccccccccCCccceEEEEEeEcC-----------CCCcE
Confidence 56666666677743221 23555677788999999999853 22799
Q ss_pred eEEEeeecCC-CCCCChhHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHhhcc--CCCCccccC-Ccchhh
Q 002210 358 WGLVVCHHTS-PRFVPFPLRYACEFLIQVFGVQVNKEVELSAQLREKHILRTQTVLCDMLLR--DSPVGIVTQ-TPNVMD 433 (953)
Q Consensus 358 WGLi~~hh~~-pr~~~~~~r~~~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~-~~~l~~ 433 (953)
||+|..+++. ++.++......++.++..++..|......++..++++.++.-..+...+.. .....+... ...+..
T Consensus 131 iGvL~l~~~~~~~~ft~~d~~lL~~la~~~a~al~~a~l~~~~~~~~~~l~~L~ei~~~l~~~~~dl~~ll~~i~~~~~~ 210 (691)
T 3ibj_A 131 VALACAFNKLEGDLFTDEDEHVIQHCFHYTSTVLTSTLAFQKEQKLKCECQALLQVAKNLFTHLDDVSVLLQEIITEARN 210 (691)
T ss_dssp EEEEEEESBSSSCCCCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCSCTTTHHHHHHHHHHH
T ss_pred EEEEEEEcCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccHHHHHHHHHHHHHH
Confidence 9999988886 668888888888888888888775433222222222111111112222222 122222222 346778
Q ss_pred hccCCeEEEEEC
Q 002210 434 LVKCDGAALYYR 445 (953)
Q Consensus 434 l~~~dg~a~~~~ 445 (953)
+++||.++|+.-
T Consensus 211 ~l~ad~~~i~L~ 222 (691)
T 3ibj_A 211 LSNAEICSVFLL 222 (691)
T ss_dssp HHTEEEEEEEEE
T ss_pred HhCCCeEEEEEE
Confidence 889999888763
No 118
>3b33_A Sensor protein; structural genomics, PAS domain, nitrogen regulation protein APC91440.4, PSI-2; HET: MSE; 1.83A {Vibrio parahaemolyticus rimd 2210633}
Probab=98.83 E-value=1.1e-08 Score=93.51 Aligned_cols=105 Identities=12% Similarity=0.138 Sum_probs=78.6
Q ss_pred HHHHHhcCccEEEEcCCCcEEecCHHHHHHhCCCcchhcCCCccccccCCcHHHHHHHHHHHhcccce-EEEEEEEcccC
Q 002210 614 VRLIETAAVPILAVDASGNVNGWNSKAAELTGLTVDQAIGTALVDLVAGDSVDVVKNMLSSAFLEERN-VEIKLRAFGPR 692 (953)
Q Consensus 614 ~~lle~~~~~I~~~D~dg~i~~~N~a~~~l~G~~~~eliG~~~~dl~~~~~~~~~~~~l~~~l~~~~~-~e~~~~~~~~~ 692 (953)
..++++++++|+++|.+|+|+++|+++++++|++.++++|+++.+++++... ....+..++..+.. ...+... .
T Consensus 10 ~~il~~~~~~i~~~D~~g~I~~~N~aa~~l~g~~~~~~~g~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~--~- 84 (115)
T 3b33_A 10 SAILNNMVTATLILDDGLAIRYANPAAELLFSQSAKRIVEQSLSQLIQHASL--DLALLTQPLQSGQSITDSDVTF--V- 84 (115)
T ss_dssp HHHHHHCSSEEEEECTTCBEEEECHHHHHHTTSCHHHHTTCBHHHHCSEEEC--CTHHHHHHHHHCCCEEEEEEEE--E-
T ss_pred HHHHhhcCceEEEECCCCcEEEECHHHHHHhCCCHHHHhCCCHHHHhCccch--hhHHHHHHHHcCCcccCCceEE--e-
Confidence 3489999999999999999999999999999999999999999887764321 11233344422222 2223222 1
Q ss_pred CCCCEEEEEEEEEEeecCCCCEEEEEEEEEecc
Q 002210 693 ETSGPVILVVNACCTQDTKENVIGVCFVGQDIT 725 (953)
Q Consensus 693 ~dG~~~~v~v~~~pi~d~~g~v~gvv~v~~DIT 725 (953)
++|..+|+.++..|+.+ +|. .|++.+++||+
T Consensus 85 ~~g~~~~~~~~~~pi~~-~g~-~~~l~~~~Di~ 115 (115)
T 3b33_A 85 VDGRPLMLEVTVSPITW-QRQ-LMLLVEMRKID 115 (115)
T ss_dssp ETTEEEEEEEEEEEEEE-TTE-EEEEEEEEEC-
T ss_pred cCCCEEEEEEEEEEeec-CCc-eEEEEEEEeCC
Confidence 36888999999999998 776 68899999985
No 119
>3fg8_A Uncharacterized protein RHA05790; PAS domain, structural genomics, PS protein structure initiative, midwest center for structural genomics, MCSG; HET: 3PB; 1.80A {Rhodococcus SP}
Probab=98.82 E-value=1.9e-09 Score=99.90 Aligned_cols=112 Identities=13% Similarity=0.140 Sum_probs=76.2
Q ss_pred HHHHHHHHHHHHhCCCCCCCCeEeecCCccEEehhHHHHHHhCCChhhhhcccccccccccccccccccCcchHHHHHHH
Q 002210 734 YTRIQGDYVGIVSSPSALIPPIFMTDEDGRCLEWNDGMEKLSGLKREEAIERMLIGEVFTVKNFGCRVKNHDTLTKLRIV 813 (953)
Q Consensus 734 L~~se~~~~~i~e~~~~li~~I~~~D~~G~i~~~N~a~~~l~G~~~eeliGk~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 813 (953)
+...+..++.+++++++ +|+++|.+|+|+++|+++++++|+++++++|+++.+ +++.... . .+...
T Consensus 7 ~~~~~~~~~~il~~~~~---~i~~~D~~g~i~~~N~a~~~l~g~~~~e~~G~~~~~-~~~~~~~-------~---~~~~~ 72 (118)
T 3fg8_A 7 HHHHSSGRENLYFQGGL---GFMALDEDLRIIYVNSGCLRHVRRSRDELLGRVVTE-VLPETQG-------S---YFDAL 72 (118)
T ss_dssp ------CCCCSSSCTTC---EEEEECTTCBEEEECHHHHHHHTCCHHHHTTSBHHH-HCGGGTT-------S---HHHHH
T ss_pred cccccchHHHHHhhCCc---eEEEECCCCeEEEECHHHHHHhCCCHHHHcCCcHHH-HcCccch-------H---HHHHH
Confidence 34455667788999987 999999999999999999999999999999999763 4443110 1 13344
Q ss_pred HHHHhcCCCcceEEEEEEccCCCEEEEEEEEEEeecCCCCEEEEEEEEEeccHH
Q 002210 814 MNKVISGQDADKILFGFFDQQGKYVEALLSANKRTNAEGKISGILCFLHVASPE 867 (953)
Q Consensus 814 l~~~~~g~~~~~~e~~~~~kdG~~~~v~~s~~pi~d~~G~i~g~v~v~~DITer 867 (953)
+...+..+....+++....++| .|+.++..|+.+ |++++++|||+|
T Consensus 73 ~~~~~~~~~~~~~~~~~~~~~g--~~~~~~~~p~~~------g~v~~~~DITer 118 (118)
T 3fg8_A 73 CRKVLATGREQQTRVDSLYSPG--MTIEVTAAADSG------ALVVHFRDVTAE 118 (118)
T ss_dssp HHHHHHHCCCEEEEEECSSSTT--CEEEEEEEEETT------EEEEEEEECSCC
T ss_pred HHHHHHcCCceEEEEEEEcCCC--eEEEEEEEEcCC------cEEEEEEeccCC
Confidence 5555555554444333344466 567777788753 377889999974
No 120
>3b33_A Sensor protein; structural genomics, PAS domain, nitrogen regulation protein APC91440.4, PSI-2; HET: MSE; 1.83A {Vibrio parahaemolyticus rimd 2210633}
Probab=98.81 E-value=2e-08 Score=91.60 Aligned_cols=105 Identities=13% Similarity=0.118 Sum_probs=77.9
Q ss_pred HHHHhCCCCCCCCeEeecCCccEEehhHHHHHHhCCChhhhhcccccccccccccccccccCcchHHHHHHHHHHHhc-C
Q 002210 742 VGIVSSPSALIPPIFMTDEDGRCLEWNDGMEKLSGLKREEAIERMLIGEVFTVKNFGCRVKNHDTLTKLRIVMNKVIS-G 820 (953)
Q Consensus 742 ~~i~e~~~~li~~I~~~D~~G~i~~~N~a~~~l~G~~~eeliGk~~~~~~~~~~~~~~~l~~~~~~~~~~~~l~~~~~-g 820 (953)
..+++++++ +++++|.+|+|+++|+++++++|++.++++|+++.. +++... . ... .+...+. +
T Consensus 10 ~~il~~~~~---~i~~~D~~g~I~~~N~aa~~l~g~~~~~~~g~~~~~-~~~~~~---~-----~~~----~~~~~~~~~ 73 (115)
T 3b33_A 10 SAILNNMVT---ATLILDDGLAIRYANPAAELLFSQSAKRIVEQSLSQ-LIQHAS---L-----DLA----LLTQPLQSG 73 (115)
T ss_dssp HHHHHHCSS---EEEEECTTCBEEEECHHHHHHTTSCHHHHTTCBHHH-HCSEEE---C-----CTH----HHHHHHHHC
T ss_pred HHHHhhcCc---eEEEECCCCcEEEECHHHHHHhCCCHHHHhCCCHHH-HhCccc---h-----hhH----HHHHHHHcC
Confidence 457888877 999999999999999999999999999999998763 333211 0 111 1222222 3
Q ss_pred CCcceEEEEEEccCCCEEEEEEEEEEeecCCCCEEEEEEEEEecc
Q 002210 821 QDADKILFGFFDQQGKYVEALLSANKRTNAEGKISGILCFLHVAS 865 (953)
Q Consensus 821 ~~~~~~e~~~~~kdG~~~~v~~s~~pi~d~~G~i~g~v~v~~DIT 865 (953)
......++.+. ++|+.+|+.++..|+.+ +|. .|++.+++||+
T Consensus 74 ~~~~~~~~~~~-~~g~~~~~~~~~~pi~~-~g~-~~~l~~~~Di~ 115 (115)
T 3b33_A 74 QSITDSDVTFV-VDGRPLMLEVTVSPITW-QRQ-LMLLVEMRKID 115 (115)
T ss_dssp CCEEEEEEEEE-ETTEEEEEEEEEEEEEE-TTE-EEEEEEEEEC-
T ss_pred CcccCCceEEe-cCCCEEEEEEEEEEeec-CCc-eEEEEEEEeCC
Confidence 33334566666 78999999999999998 776 68899999985
No 121
>2qkp_A Uncharacterized protein; structural genomics, unknown function, PSI-2, protein struct initiative; 1.75A {Streptococcus mutans}
Probab=98.79 E-value=1.1e-08 Score=99.60 Aligned_cols=117 Identities=15% Similarity=0.188 Sum_probs=83.3
Q ss_pred HHHHHHhCCCCCCCCeEeecCCccEEehhHH---HHHHhCCChhhhhcccccccccccccccccccCcchHHHHHHHHHH
Q 002210 740 DYVGIVSSPSALIPPIFMTDEDGRCLEWNDG---MEKLSGLKREEAIERMLIGEVFTVKNFGCRVKNHDTLTKLRIVMNK 816 (953)
Q Consensus 740 ~~~~i~e~~~~li~~I~~~D~~G~i~~~N~a---~~~l~G~~~eeliGk~~~~~~~~~~~~~~~l~~~~~~~~~~~~l~~ 816 (953)
.+.+++++++. +|+++|.+|+|+|+|++ +++++| ..++++|+++. .+++. .....+...+.
T Consensus 20 ~l~~IL~~~~~---gI~~vD~~g~I~~~N~a~~~~~~i~g-~~~~~iGr~v~-~~~~~----------~~~~~v~~i~~- 83 (151)
T 2qkp_A 20 QANLILNHLPL---EITFVNKDDIFQYYNDSVPAAEMVFK-RTPSQVGRNVE-LCHPP----------KVLDKVKKVFE- 83 (151)
T ss_dssp HHHHHHHHSSS---EEEEEETTSBEEEECCCSCGGGCSSC-CCGGGTTSBGG-GSSCH----------HHHHHHHHHHH-
T ss_pred HHHHHHHhCCC---ceEEEcCCCeEEEEeCCCchhhhhcC-CCHHHcCCCHH-HhCCH----------HHHHHHHHHHH-
Confidence 47789999987 99999999999999999 999999 56789999985 33332 11122222333
Q ss_pred HhcCCCcceEEEEEEccCCCEEEEEEEEEEeecCCCCEEEEEEEEEeccHHHHHHHH
Q 002210 817 VISGQDADKILFGFFDQQGKYVEALLSANKRTNAEGKISGILCFLHVASPELQYALQ 873 (953)
Q Consensus 817 ~~~g~~~~~~e~~~~~kdG~~~~v~~s~~pi~d~~G~i~g~v~v~~DITerK~~e~e 873 (953)
.+..+.....++.+...+ ..+++.++..|++|.+|++.|++.+++|||+.++.+.+
T Consensus 84 ~l~~g~~~~~~~~~~~~~-~~~~v~v~~~Pi~d~~G~~~G~vev~~Dit~l~~le~~ 139 (151)
T 2qkp_A 84 LLRNGQRDKVNMWFQSER-LGKFVYVTYAAVRDQAGDFQGVLEYVQDIKPFFELDSE 139 (151)
T ss_dssp HHHTTSBSEEEEEEEETT-TTEEEEEEEEEEECTTCCEEEEEEEEEECGGGGGGGGC
T ss_pred HHHcCCccEEEEEEecCC-CCeEEEEEEEEEECCCCCEEEEEEEEEECHHHHhhhhh
Confidence 333333344444443322 12567889999999999999999999999987755533
No 122
>1mc0_A 3',5'-cyclic nucleotide phosphodiesterase 2A; GAF domain, 3',5' guanosine monophosphate, hydrolase; HET: PCG; 2.86A {Mus musculus} SCOP: d.110.2.1 d.110.2.1
Probab=98.75 E-value=9.2e-08 Score=107.30 Aligned_cols=204 Identities=8% Similarity=0.010 Sum_probs=129.6
Q ss_pred HHHHHHHHHhccCCCCCHHHHHHHHHHHHHhhhCCCeEEEEeecCCCCceEEEeecCCCCCCccCCCCCCCCccHHHHHH
Q 002210 199 KLAAKAISRLQSLPSGNISLLCDVLVNEVSDLTGYDRVMVYKFHEDEHGEVVAECRRPDLEPYLGFHYPATDIPQASRFL 278 (953)
Q Consensus 199 ~~~~~~~~~l~~~~~~~~~~l~~~~v~~vr~~~g~DRVmiY~F~~d~~G~viaE~~~~~~~~~lg~~~pa~dip~~ar~l 278 (953)
+.+.++...| + +.+++++++.+++.+++++|+||+.||.+++|+. +.++.+... ....-+.++|...=+ ....
T Consensus 14 ~~l~~l~~~l-~--~~dl~~~l~~i~~~~~~~~~~~~~~i~l~d~~~~-~l~~~~~~g-~~~~~~~~~~~~~g~--~g~~ 86 (368)
T 1mc0_A 14 RKILQLCGEL-F--DLDATSLQLKVLQYLQQETQATHCCLLLVSEDNL-QLSCKVIGD-KVLGEEVSFPLTMGR--LGQV 86 (368)
T ss_dssp HHHHHHHHTC-C--CSSHHHHHHHHHHHHHHHSCEEEEEEEEECSSSC-EEEEEEETT-EEEEEEEEEESSSSS--HHHH
T ss_pred HHHHHHHHHH-h--hhhHHHHHHHHHHHHHHHhCCcEEEEEEEeCCCC-eEEEEecCC-CccccceeeccccCH--HHHH
Confidence 3445566667 5 6799999999999999999999999999998864 454444322 112223445543322 2456
Q ss_pred HHhCCceEeecCCCCCceeeeCCCCCCccccCCccccCCChhHHHHhhhcCCeeEEEEEEEEeCCcccccccccCCCcee
Q 002210 279 IMKNKVRMICDCLAPPVKVIQDKKLDQPLSLCGSTLRAPHGCHARYMENMGSIASLVMSVTINEAEDELDNDQEQGRKLW 358 (953)
Q Consensus 279 y~~n~~r~i~D~~~~~~~l~~~~~~~~~ldl~~s~lr~~s~~h~~yl~nmgv~asl~~~i~~~~~~~~~~~~~~~~~~LW 358 (953)
+..++.-.|+|+...| | ++......++++|.|++||+.+ .+|++|
T Consensus 87 ~~~~~~~~i~d~~~~~--------------------~----~~~~~~~~~~~~s~l~vPl~~~-----------~~~~~~ 131 (368)
T 1mc0_A 87 VEDKQCIQLKDLTSDD--------------------V----QQLQNMLGCELQAMLCVPVISR-----------ATDQVV 131 (368)
T ss_dssp HHHCCCEEGGGSCHHH--------------------H----HHHHHHHCSCCCCEEEEEEECT-----------TTCSEE
T ss_pred HhcCCeEEeccccccc--------------------c----cccccccCcccceEEEEEeecC-----------CCCcEE
Confidence 7778887888843221 1 3445677888999999999864 127999
Q ss_pred EEEeeecCC-CCCCChhHHHHHHHHHHHHHHhhHHHHHHHHHHH-HHHHHHHHHHHHHhhccC--CCCcccc-CCcchhh
Q 002210 359 GLVVCHHTS-PRFVPFPLRYACEFLIQVFGVQVNKEVELSAQLR-EKHILRTQTVLCDMLLRD--SPVGIVT-QTPNVMD 433 (953)
Q Consensus 359 GLi~~hh~~-pr~~~~~~r~~~~~l~~~~~~~l~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~--~~~~~~~-~~~~l~~ 433 (953)
|.|.++++. ++.++......++.++..++..|......+...+ ++...... .+...+... ....+.. -...+..
T Consensus 132 Gvl~l~~~~~~~~f~~~d~~~l~~la~~~~~al~~~~l~~~~~~~~~~l~~l~-~i~~~l~~~~~~~~~~l~~i~~~~~~ 210 (368)
T 1mc0_A 132 ALACAFNKLGGDFFTDEDEHVIQHCFHYTGTVLTSTLAFQKEQKLKCECQALL-QVAKNLFTHLDDVSVLLQEIITEARN 210 (368)
T ss_dssp EEEEEEEESSCSSCCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHTTTCHHHHHHHHHHHHHH
T ss_pred EEEEeecCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHhcccCHHHHHHHHHHHHHH
Confidence 999988876 5668999999999999999888864322221111 11111111 111222221 1212211 1245677
Q ss_pred hccCCeEEEEEC
Q 002210 434 LVKCDGAALYYR 445 (953)
Q Consensus 434 l~~~dg~a~~~~ 445 (953)
+++||.++|+.-
T Consensus 211 ~~~~~~~~i~l~ 222 (368)
T 1mc0_A 211 LSNAEICSVFLL 222 (368)
T ss_dssp HHTEEEEEEEEE
T ss_pred HhcccEEEEEEE
Confidence 889998877763
No 123
>3a0r_A Sensor protein; four helix bundle, PAS fold, kinase, phosphoprotein, transfe two-component regulatory system; 3.80A {Thermotoga maritima}
Probab=98.75 E-value=1.6e-09 Score=120.59 Aligned_cols=121 Identities=20% Similarity=0.307 Sum_probs=86.9
Q ss_pred HHHHHHHHHHHHHhcCccEEEEcCCCcEEecCHHHHHHhCCCcchhcCCCccccccCCcHHHHHHHHHHHhcccceEEEE
Q 002210 606 LRIITNEMVRLIETAAVPILAVDASGNVNGWNSKAAELTGLTVDQAIGTALVDLVAGDSVDVVKNMLSSAFLEERNVEIK 685 (953)
Q Consensus 606 L~~~~~~l~~lle~~~~~I~~~D~dg~i~~~N~a~~~l~G~~~~eliG~~~~dl~~~~~~~~~~~~l~~~l~~~~~~e~~ 685 (953)
++++++.++.++++++++|+++|.+|+|++||+++++++||+.++++|+++.++.++.. ........+..+......
T Consensus 3 l~~~~~~~~~i~~~~~~~i~~~d~~g~i~~~N~a~~~l~G~~~~e~~G~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~ 79 (349)
T 3a0r_A 3 VEHLRNFSESILESLETAIITLSKDGRITEWNKKAEQLFGLKKENVLGRRLKDLPDFEE---IGSVAESVFENKEPVFLN 79 (349)
T ss_dssp ------CCCSSGGGSSSEEEEEESSSBCSCBCHHHHHHHSCCSTTTTTCBSTTSTTTTH---HHHHHHHHHHHCCCCEEE
T ss_pred hHHHHHHHHHHHhhhcCeEEEECCCCCEEeeHHHHHHHhCCCHHHHcCcCHHHCcChhH---HHHHHHHHHhcCCceeec
Confidence 34455567789999999999999999999999999999999999999999998744332 233344444333333222
Q ss_pred EEEcccCCCCCEEEEEEEEEEeecCCCCE-EEEEEEEEecchhHHHHHHHH
Q 002210 686 LRAFGPRETSGPVILVVNACCTQDTKENV-IGVCFVGQDITGQKLVMDKYT 735 (953)
Q Consensus 686 ~~~~~~~~dG~~~~v~v~~~pi~d~~g~v-~gvv~v~~DITerk~~E~~L~ 735 (953)
.. .++.+|+.++..|+.+..|.. .|++++++|||++|++|++++
T Consensus 80 ~~------~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~DiTe~~~~e~~~~ 124 (349)
T 3a0r_A 80 FY------KFGERYFNIRFSPFRNAKTQLLEGVIITIDDVTELYKYEEERK 124 (349)
T ss_dssp CC------CBTTBCCEEEEEEECCTTTTSSCEEEEEEECCSTTTTTTTTTT
T ss_pred cc------ccCceEEEEEEEEEEcCCCceeeEEEEEEEechHHHHHHHHHH
Confidence 11 123457788999999877765 589999999999988776543
No 124
>3hcy_A Putative two-component sensor histidine kinase PR; two-component sensor histidine kinase protein, structural GE PSI, MCSG; 2.80A {Sinorhizobium meliloti}
Probab=98.74 E-value=4e-08 Score=95.00 Aligned_cols=138 Identities=12% Similarity=0.069 Sum_probs=92.1
Q ss_pred CCCHHHHHHHHHHHHHhhhCCCeEEEEeecCCCCceEEEeecCCCCCC-ccCCCCCCCCccHHHHHHHHhCCceEeecCC
Q 002210 213 SGNISLLCDVLVNEVSDLTGYDRVMVYKFHEDEHGEVVAECRRPDLEP-YLGFHYPATDIPQASRFLIMKNKVRMICDCL 291 (953)
Q Consensus 213 ~~~~~~l~~~~v~~vr~~~g~DRVmiY~F~~d~~G~viaE~~~~~~~~-~lg~~~pa~dip~~ar~ly~~n~~r~i~D~~ 291 (953)
|.+++++++.+++.+.+++|+|++.||-+++|+.-.+.+- .++++ +... ..... | ....+..++.-+|.|+.
T Consensus 1 S~~l~~~l~~~~~~~~~~~~~~~~~i~l~d~~~~l~~~a~---~g~~~~~~~~-~~~~~-~--~~~~~~~~~~~~i~d~~ 73 (151)
T 3hcy_A 1 SNAIEEVYEATLDAIQGALNCDRASILLFDEAGTMRFVAA---RGLSEHYQRA-VDGHS-P--WITGANEPEPIFVENVD 73 (151)
T ss_dssp CCCCHHHHHHHHHHHHHHHCCSEEEEEEECTTSCEEEEEE---ESCCHHHHHH-TCBCC-S--CC---CCCCCEEESCGG
T ss_pred CccHHHHHHHHHHHHHHhhcCCEEEEEEEcCCCcEEEEee---CCCCHHHHhh-ccCCC-c--hhhhhhcCCcEEEeChh
Confidence 3588999999999999999999999999999873222221 12111 1000 00000 0 00111122222233311
Q ss_pred CCCceeeeCCCCCCccccCCccccCCChhHHHHhhhcCCeeEEEEEEEEeCCcccccccccCCCceeEEEeeecCCCCCC
Q 002210 292 APPVKVIQDKKLDQPLSLCGSTLRAPHGCHARYMENMGSIASLVMSVTINEAEDELDNDQEQGRKLWGLVVCHHTSPRFV 371 (953)
Q Consensus 292 ~~~~~l~~~~~~~~~ldl~~s~lr~~s~~h~~yl~nmgv~asl~~~i~~~~~~~~~~~~~~~~~~LWGLi~~hh~~pr~~ 371 (953)
.. ...+.+.+.+...|+++.+++||+.+ |+++|.|..++..|+.+
T Consensus 74 ~~----------------------~~~~~~~~~~~~~g~~s~~~vPl~~~-------------~~~iGvl~~~~~~~~~f 118 (151)
T 3hcy_A 74 DA----------------------EFSRELKESIVGEGIAALGFFPLVTE-------------GRLIGKFMTYYDRPHRF 118 (151)
T ss_dssp GS----------------------CCCHHHHHHHHHHTCCEEEEEEEESS-------------SSEEEEEEEEESSCCCC
T ss_pred hC----------------------cccchhHHHHHhcCchheEEeceEEC-------------CEEEEEEEEecCCCCCC
Confidence 11 11255677888999999999999976 99999999999999999
Q ss_pred ChhHHHHHHHHHHHHHHhhHH
Q 002210 372 PFPLRYACEFLIQVFGVQVNK 392 (953)
Q Consensus 372 ~~~~r~~~~~l~~~~~~~l~~ 392 (953)
+...+.+++.++.+++..|..
T Consensus 119 ~~~~~~ll~~~a~~~a~ai~~ 139 (151)
T 3hcy_A 119 ADSEIGMALTIARQLGFSIQR 139 (151)
T ss_dssp CHHHHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHHHH
Confidence 999999999888888877753
No 125
>2w0n_A Sensor protein DCUS; signal transduction, two-component regulatory system, PAS, kinase, membrane, transferase, solid state cell inner membrane; NMR {Escherichia coli}
Probab=98.71 E-value=3.3e-09 Score=96.59 Aligned_cols=108 Identities=18% Similarity=0.189 Sum_probs=81.9
Q ss_pred HHHHHHHHHHHHHHHHhcCccEEEEcCCCcEEecCHHHHHHhCC---CcchhcCCCccccccCCcHHHHHHHHHHHhccc
Q 002210 603 IDELRIITNEMVRLIETAAVPILAVDASGNVNGWNSKAAELTGL---TVDQAIGTALVDLVAGDSVDVVKNMLSSAFLEE 679 (953)
Q Consensus 603 ~~eL~~~~~~l~~lle~~~~~I~~~D~dg~i~~~N~a~~~l~G~---~~~eliG~~~~dl~~~~~~~~~~~~l~~~l~~~ 679 (953)
.+++++..++++.++++++++|+++|.+|+|+++|+++++++|+ +.++++|+++.+++++.. +...+..+
T Consensus 7 ~~~l~~~~~~~~~il~~~~~~i~~~d~~g~i~~~N~~~~~~~g~~~~~~~~~~g~~~~~~~~~~~-------~~~~~~~~ 79 (118)
T 2w0n_A 7 PYEISTLFEQRQAMLQSIKEGVVAVDDRGEVTLINDAAQELLNYRKSQDDEKLSTLSHSWSQVVD-------VSEVLRDG 79 (118)
T ss_dssp HHHHCTTHHHHHHHHHCCCCCCEEEBTTTBCCCBCHHHHHHHCSCTTTTTSSCCCTTCCCSCTHH-------HHHHHHTT
T ss_pred HHHHHHHHHHHHHHHhhccccEEEECCCCcEeehhHHHHHHhCCCccChhhhhccCcccccCchh-------HHHHhccC
Confidence 45566777888999999999999999999999999999999997 789999999998876532 22233222
Q ss_pred ceE-EEEEEEcccCCCCCEEEEEEEEEEeecCCCCEEEEEEEEEecc
Q 002210 680 RNV-EIKLRAFGPRETSGPVILVVNACCTQDTKENVIGVCFVGQDIT 725 (953)
Q Consensus 680 ~~~-e~~~~~~~~~~dG~~~~v~v~~~pi~d~~g~v~gvv~v~~DIT 725 (953)
... .... . .+| .|+.++..|+.+ +|++.|++++++|||
T Consensus 80 ~~~~~~~~-~----~~~--~~~~~~~~p~~~-~g~~~g~v~~~~DiT 118 (118)
T 2w0n_A 80 TPRRDEEI-T----IKD--RLLLINTVPVRS-NGVIIGAISTFRDKT 118 (118)
T ss_dssp CCCCCCCE-E----SSS--CEECCCEECCCC-SSCCCCEEECCCCCC
T ss_pred ceeccEEE-E----ECC--EEEEEeeceeee-CCEEEEEEEEEEeCC
Confidence 111 1111 1 134 467778899987 888889999999997
No 126
>3cax_A Uncharacterized protein PF0695; structural genomics, unknown function, PSI-2, protein struct initiative; 2.43A {Pyrococcus furiosus dsm 3638}
Probab=98.71 E-value=4.1e-08 Score=110.43 Aligned_cols=112 Identities=20% Similarity=0.206 Sum_probs=86.2
Q ss_pred HHHHHHHHhcCccEEEEcCCCcEEecCHHHHHHhCCCcchhcCCCccccccCCcHHHHHHHHHHHhcccc--eEEEEEEE
Q 002210 611 NEMVRLIETAAVPILAVDASGNVNGWNSKAAELTGLTVDQAIGTALVDLVAGDSVDVVKNMLSSAFLEER--NVEIKLRA 688 (953)
Q Consensus 611 ~~l~~lle~~~~~I~~~D~dg~i~~~N~a~~~l~G~~~~eliG~~~~dl~~~~~~~~~~~~l~~~l~~~~--~~e~~~~~ 688 (953)
..+..+++++++||+++|.+|+|+++|++ +++| ++.++++|+++.+++++.....+.. +..++..+. ..+..+..
T Consensus 239 ~~l~~IL~~l~dgIivvD~~g~I~~~N~a-e~i~-~~~~e~iGr~v~~~~p~~~~~~~~~-l~~~l~~g~~~~~~~~~~~ 315 (369)
T 3cax_A 239 EELKAIFEALPVDVTFIDKDDRVRFFSPG-ERIF-TRTPSVLGRPVQLCHPPKSVYVVNK-ILKAFKEGRKKEATFWLRL 315 (369)
T ss_dssp HHHHHHHHHSSSEEEEECTTSBEEEECCS-SCSS-CCCGGGTTCBTTTSSCGGGHHHHHH-HHHHHHHTSCSCEEEEEEE
T ss_pred HHHHHHHHhCCCcEEEECCCCcEEEEcCH-HHcc-CChHHHcCCcHHHHCChhhHHHHHH-HHHHHHcCCceEEEEEEee
Confidence 35678999999999999999999999999 9999 8999999999998887654443332 333332222 22332221
Q ss_pred cccCCCCCEEEEEEEEEEeecCCCCEEEEEEEEEecchhHHHHH
Q 002210 689 FGPRETSGPVILVVNACCTQDTKENVIGVCFVGQDITGQKLVMD 732 (953)
Q Consensus 689 ~~~~~dG~~~~v~v~~~pi~d~~g~v~gvv~v~~DITerk~~E~ 732 (953)
+| +++.++..|++|.+|+++|++.+++|||+.++.++
T Consensus 316 -----~g--~~v~v~~~PI~d~~G~~~G~v~v~~DITe~~~le~ 352 (369)
T 3cax_A 316 -----RE--KYVYIKYVPLFNEKGEYIGTLEMTMDIAPYKKIEG 352 (369)
T ss_dssp -----TT--EEEEEEEEEEECTTSCEEEEEEEEEECHHHHTCCS
T ss_pred -----CC--EEEEEEEEEEECCCCCEEEEEEEEEcCHHHHHHHH
Confidence 24 57888999999999999999999999999877554
No 127
>1ll8_A PAS kinase; PAS domain, ligand binding, ligand screening, kinase regulation, transferase; NMR {Homo sapiens} SCOP: d.110.3.5
Probab=98.66 E-value=1.8e-08 Score=92.16 Aligned_cols=99 Identities=15% Similarity=0.188 Sum_probs=69.5
Q ss_pred CeEeecCC-ccEEehhHHHHHHhCCChhhhhcccccccccccccccccccCcchHHHHHHHHHHHhcC-CCc---ceEEE
Q 002210 754 PIFMTDED-GRCLEWNDGMEKLSGLKREEAIERMLIGEVFTVKNFGCRVKNHDTLTKLRIVMNKVISG-QDA---DKILF 828 (953)
Q Consensus 754 ~I~~~D~~-G~i~~~N~a~~~l~G~~~eeliGk~~~~~~~~~~~~~~~l~~~~~~~~~~~~l~~~~~g-~~~---~~~e~ 828 (953)
+|+++|.+ |+|+++|+++++++||+.++++|+++.. ++++.. ... ..........+ +.. ...++
T Consensus 10 ~i~~~d~~~g~I~~~N~aa~~l~G~~~~el~g~~~~~-l~~~~~-------~~~---~~~~~~~~~~~~~~~~~~~~~~~ 78 (114)
T 1ll8_A 10 AIFTVDAKTTEILVANDKACGLLGYSSQDLIGQKLTQ-FFLRSD-------SDV---VEALSEEHMEADGHAAVVFGTVV 78 (114)
T ss_dssp EEEEEETTTCBEEEECTTHHHHHTCCTTTTTTSBGGG-GSSCTT-------THH---HHHTTSSTTSSSSCSSCCCSSSE
T ss_pred eEEEEECCCCeEEEehHHHHHHhCCCHHHHcCCCHHH-hcCcch-------hHH---HHHHHHHhhccCCcceeccCcEE
Confidence 89999999 9999999999999999999999999864 333211 011 11111111111 111 13456
Q ss_pred EEEccCCCEEEEEEEEEEeecCCCCEEEEEEEEEecc
Q 002210 829 GFFDQQGKYVEALLSANKRTNAEGKISGILCFLHVAS 865 (953)
Q Consensus 829 ~~~~kdG~~~~v~~s~~pi~d~~G~i~g~v~v~~DIT 865 (953)
.++++||+.+|+.++.+|+.+.++. +++++++|++
T Consensus 79 ~~~~~dG~~~~v~~~~~~~~~~~~~--~~v~~~~~~~ 113 (114)
T 1ll8_A 79 DIISRSGEKIPVSVWMKRMRQERRL--CCVVVLEPVE 113 (114)
T ss_dssp EECCTTCCCEEEECCEECCBSSSSB--EEEEEEEECC
T ss_pred EEEecCCCEEEEEEEEEeeccCCcc--EEEEEEeecC
Confidence 7789999999999999999876543 5788899976
No 128
>3a0s_A Sensor protein; PAS-fold, kinase, phosphoprotein, transferase, two-component regulatory system; HET: PG4 PGE; 1.47A {Thermotoga maritima} PDB: 3a0v_A*
Probab=98.65 E-value=2.1e-07 Score=80.11 Aligned_cols=95 Identities=23% Similarity=0.384 Sum_probs=70.4
Q ss_pred cCccEEEEcCCCcEEecCHHHHHHhCCCcchhcCCCccccccCCcHHHHHHHHHHHhcccceEEEEEEEcccCCCCCEEE
Q 002210 620 AAVPILAVDASGNVNGWNSKAAELTGLTVDQAIGTALVDLVAGDSVDVVKNMLSSAFLEERNVEIKLRAFGPRETSGPVI 699 (953)
Q Consensus 620 ~~~~I~~~D~dg~i~~~N~a~~~l~G~~~~eliG~~~~dl~~~~~~~~~~~~l~~~l~~~~~~e~~~~~~~~~~dG~~~~ 699 (953)
++++|+++|.+|+|+++|+++++++|++.++++|+++.++ +.... ....+...+..+...++... ++..+|
T Consensus 1 ~~~~i~~~d~~g~i~~~N~~~~~l~g~~~~~~~g~~~~~~--~~~~~-~~~~~~~~~~~~~~~~~~~~------~~~~~~ 71 (96)
T 3a0s_A 1 METAIITLSKDGRITEWNKKAEQLFGLKKENVLGRRLKDL--PDFEE-IGSVAESVFENKEPVFLNFY------KFGERY 71 (96)
T ss_dssp CCCEEEEEETTSBEEEECHHHHHHHCCCHHHHTTSBGGGS--TTCHH-HHHHHHHHHHHTCCEEEEEE------EETTEE
T ss_pred CCceEEEEcCCCCEeehhHHHHHHhCCCHHHhcCCCHHHC--cchHH-HHHHHHHHhccCCeEEEEEE------cCCcEE
Confidence 4789999999999999999999999999999999999887 33322 33344444433344443322 244568
Q ss_pred EEEEEEEeecCCCC-EEEEEEEEEe
Q 002210 700 LVVNACCTQDTKEN-VIGVCFVGQD 723 (953)
Q Consensus 700 v~v~~~pi~d~~g~-v~gvv~v~~D 723 (953)
+.++..|+.+.+|. +.|++++++|
T Consensus 72 ~~~~~~p~~~~~~~~~~g~v~~~~D 96 (96)
T 3a0s_A 72 FNIRFSPFRNAKTQLLEGVIITIDD 96 (96)
T ss_dssp EEEEEEEEECTTTCCEEEEEEEEEC
T ss_pred EEEEEEEeEcCCCCeeeEEEEEecC
Confidence 89999999987565 6799888877
No 129
>1ll8_A PAS kinase; PAS domain, ligand binding, ligand screening, kinase regulation, transferase; NMR {Homo sapiens} SCOP: d.110.3.5
Probab=98.64 E-value=1.4e-08 Score=92.82 Aligned_cols=103 Identities=17% Similarity=0.172 Sum_probs=73.7
Q ss_pred hcCccEEEEcCC-CcEEecCHHHHHHhCCCcchhcCCCccccccCCcHHHHHHHHHHHh-cccceE---EEEEEEcccCC
Q 002210 619 TAAVPILAVDAS-GNVNGWNSKAAELTGLTVDQAIGTALVDLVAGDSVDVVKNMLSSAF-LEERNV---EIKLRAFGPRE 693 (953)
Q Consensus 619 ~~~~~I~~~D~d-g~i~~~N~a~~~l~G~~~~eliG~~~~dl~~~~~~~~~~~~l~~~l-~~~~~~---e~~~~~~~~~~ 693 (953)
+.+++|+++|.+ |+|+++|++++++|||+.++++|+++.+++++.+............ ..+... ..++. ..++
T Consensus 6 ~~~~~i~~~d~~~g~I~~~N~aa~~l~G~~~~el~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~ 83 (114)
T 1ll8_A 6 EFNKAIFTVDAKTTEILVANDKACGLLGYSSQDLIGQKLTQFFLRSDSDVVEALSEEHMEADGHAAVVFGTVVD--IISR 83 (114)
T ss_dssp TTTCEEEEEETTTCBEEEECTTHHHHHTCCTTTTTTSBGGGGSSCTTTHHHHHTTSSTTSSSSCSSCCCSSSEE--ECCT
T ss_pred CCCceEEEEECCCCeEEEehHHHHHHhCCCHHHHcCCCHHHhcCcchhHHHHHHHHHhhccCCcceeccCcEEE--EEec
Confidence 456799999999 9999999999999999999999999999998765543222222122 111110 11112 2567
Q ss_pred CCCEEEEEEEEEEeecCCCCEEEEEEEEEecc
Q 002210 694 TSGPVILVVNACCTQDTKENVIGVCFVGQDIT 725 (953)
Q Consensus 694 dG~~~~v~v~~~pi~d~~g~v~gvv~v~~DIT 725 (953)
||..+|+.++..|+.+..+ .+++++++|++
T Consensus 84 dG~~~~v~~~~~~~~~~~~--~~~v~~~~~~~ 113 (114)
T 1ll8_A 84 SGEKIPVSVWMKRMRQERR--LCCVVVLEPVE 113 (114)
T ss_dssp TCCCEEEECCEECCBSSSS--BEEEEEEEECC
T ss_pred CCCEEEEEEEEEeeccCCc--cEEEEEEeecC
Confidence 8999999999999987443 35677888875
No 130
>3o5y_A Sensor protein; GAF domain, histidine, kinase, PSI, MCSG, structural genomics, midwest center for structural genomics, protein S initiative; 2.45A {Bacillus halodurans}
Probab=98.61 E-value=6.5e-07 Score=88.45 Aligned_cols=138 Identities=10% Similarity=0.080 Sum_probs=99.1
Q ss_pred CCHHHHHHHHHHHHHhhhCCCeEEEEeecCCCCceEEEeecCCCCCCc--cCCCCCCCCccHHHHHHHHhCCceEeecCC
Q 002210 214 GNISLLCDVLVNEVSDLTGYDRVMVYKFHEDEHGEVVAECRRPDLEPY--LGFHYPATDIPQASRFLIMKNKVRMICDCL 291 (953)
Q Consensus 214 ~~~~~l~~~~v~~vr~~~g~DRVmiY~F~~d~~G~viaE~~~~~~~~~--lg~~~pa~dip~~ar~ly~~n~~r~i~D~~ 291 (953)
.+++++++.+++.++++++||++-+|-++++ +.+.++..+.-... .|..+|..+-+ ...-+..++.-+ .|..
T Consensus 4 ~sldevL~~v~~~l~~~~~~d~~~l~L~~~~---~L~l~a~~~~~~~~~~~~~~ip~~~s~--~~~v~~~~~~~v-~~~~ 77 (165)
T 3o5y_A 4 MSLDDIINNMIDKLKLLVHFDRISFLLLANE---TLKLSHVYPKGSHSLDIGSTIPKEQSL--YWSALDQRQTIF-RSLT 77 (165)
T ss_dssp CCHHHHHHHHHHHHHHHSCCSEEEEEEEETT---EEEEEEEESTTCCSSCTTCEECSTTCH--HHHHHHHTSCEE-EESC
T ss_pred CCHHHHHHHHHHHHHHhcCcceEEEEEEECC---EEEEEEEecCCccccccccccCCccCH--HHHHHHhCCeEE-EcCc
Confidence 4899999999999999999999999999753 33434333332222 46667764322 233344555444 3422
Q ss_pred CCCceeeeCCCCCCccccCCccccCCChhHHHHhhhcCCeeEEEEEEEEeCCcccccccccCCCceeEEEeeecCCCCCC
Q 002210 292 APPVKVIQDKKLDQPLSLCGSTLRAPHGCHARYMENMGSIASLVMSVTINEAEDELDNDQEQGRKLWGLVVCHHTSPRFV 371 (953)
Q Consensus 292 ~~~~~l~~~~~~~~~ldl~~s~lr~~s~~h~~yl~nmgv~asl~~~i~~~~~~~~~~~~~~~~~~LWGLi~~hh~~pr~~ 371 (953)
..+- .-+...|+...|++|.|++||+.+ |++||.|...+..|+.+
T Consensus 78 ~~~~----------------------~~~~~~~~~~~~~~S~l~vPL~~~-------------~~~iGvl~l~~~~~~~f 122 (165)
T 3o5y_A 78 DTQD----------------------NFYEKQYLAILDLKSILVIPIYSK-------------NKRVGVLSIGRKQQIDW 122 (165)
T ss_dssp CTTC----------------------CCTTHHHHHTTTCCEEEEEEEECS-------------SCEEEEEEEEESSCCCC
T ss_pred cccc----------------------ccccchHHHhhCCCEEEEeCeeEC-------------CEEEEEEEEEeCCCCCC
Confidence 1110 022346889999999999999987 99999999999889999
Q ss_pred ChhHHHHHHHHHHHHHHhhHH
Q 002210 372 PFPLRYACEFLIQVFGVQVNK 392 (953)
Q Consensus 372 ~~~~r~~~~~l~~~~~~~l~~ 392 (953)
+......++.|+.++++.|..
T Consensus 123 ~~~d~~~l~~la~~~aiai~n 143 (165)
T 3o5y_A 123 SLDDLAFLEQLTDHLAVSIEN 143 (165)
T ss_dssp CHHHHHHHHHHHHHHHHHHHT
T ss_pred CHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999888887753
No 131
>1mc0_A 3',5'-cyclic nucleotide phosphodiesterase 2A; GAF domain, 3',5' guanosine monophosphate, hydrolase; HET: PCG; 2.86A {Mus musculus} SCOP: d.110.2.1 d.110.2.1
Probab=98.56 E-value=1.1e-06 Score=98.48 Aligned_cols=150 Identities=12% Similarity=0.150 Sum_probs=108.9
Q ss_pred HHHHHHhccCCC-CCHHHHHHHHHHHHHhhhCCCeEEEEeecCCCCceEEEeecCCCC--CCccCCCCCCCCccHHHHHH
Q 002210 202 AKAISRLQSLPS-GNISLLCDVLVNEVSDLTGYDRVMVYKFHEDEHGEVVAECRRPDL--EPYLGFHYPATDIPQASRFL 278 (953)
Q Consensus 202 ~~~~~~l~~~~~-~~~~~l~~~~v~~vr~~~g~DRVmiY~F~~d~~G~viaE~~~~~~--~~~lg~~~pa~dip~~ar~l 278 (953)
.++...|.+ + .+++++++.+++.+++++|+||+.||.+++ |+....+...++ +...+..+|... .-+...
T Consensus 184 ~~i~~~l~~--~~~~~~~~l~~i~~~~~~~~~~~~~~i~l~d~---~~l~~~~~~g~~~~~~~~~~~~~~~~--~~~~~~ 256 (368)
T 1mc0_A 184 LQVAKNLFT--HLDDVSVLLQEIITEARNLSNAEICSVFLLDQ---NELVAKVFDGGVVDDESYEIRIPADQ--GIAGHV 256 (368)
T ss_dssp HHHHHHHHH--TTTCHHHHHHHHHHHHHHHHTEEEEEEEEECS---SSEEEEEETTEECCCSTTCCEECTTS--HHHHHH
T ss_pred HHHHHHHHh--cccCHHHHHHHHHHHHHHHhcccEEEEEEEeC---CceEEEEeccccccccccceeecCCC--ceeeee
Confidence 334445555 4 489999999999999999999999999988 455555544322 234566676542 345667
Q ss_pred HHhCCceEeecCCCCCceeeeCCCCCCccccCCccccCCChhHHHHhhhcCCeeEEEEEEEEeCCcccccccccCCCcee
Q 002210 279 IMKNKVRMICDCLAPPVKVIQDKKLDQPLSLCGSTLRAPHGCHARYMENMGSIASLVMSVTINEAEDELDNDQEQGRKLW 358 (953)
Q Consensus 279 y~~n~~r~i~D~~~~~~~l~~~~~~~~~ldl~~s~lr~~s~~h~~yl~nmgv~asl~~~i~~~~~~~~~~~~~~~~~~LW 358 (953)
+..++...|+|+...|-- .........+++++.+++||+.. +|++|
T Consensus 257 ~~~~~~~~i~d~~~~~~~----------------------~~~~~~~~~~~~~s~l~vPl~~~------------~~~~i 302 (368)
T 1mc0_A 257 ATTGQILNIPDAYAHPLF----------------------YRGVDDSTGFRTRNILCFPIKNE------------NQEVI 302 (368)
T ss_dssp HHHCCCEEESCSTTCTTC----------------------CCTTHHHHTCCCCCEEEEEEECT------------TSCEE
T ss_pred hhhCCEEEecCcccCccc----------------------chhhhhccCCccceEEEEeeECC------------CCcEE
Confidence 888998899996544311 11111233455799999999962 18999
Q ss_pred EEEeeecCCCC-CCChhHHHHHHHHHHHHHHhhHH
Q 002210 359 GLVVCHHTSPR-FVPFPLRYACEFLIQVFGVQVNK 392 (953)
Q Consensus 359 GLi~~hh~~pr-~~~~~~r~~~~~l~~~~~~~l~~ 392 (953)
|.|.++++.++ .++...+..++.++.+++..|..
T Consensus 303 Gvl~l~~~~~~~~f~~~d~~ll~~la~~~a~ai~n 337 (368)
T 1mc0_A 303 GVAELVNKINGPWFSKFDEDLATAFSIYCGISIAH 337 (368)
T ss_dssp EEEEEEEETTSSSCCHHHHHHHHHHHHHHHHHHHH
T ss_pred EEEEEEECCCCCCCCHHHHHHHHHHHHHHHHHHHH
Confidence 99999999875 79999999999999988887754
No 132
>2w0n_A Sensor protein DCUS; signal transduction, two-component regulatory system, PAS, kinase, membrane, transferase, solid state cell inner membrane; NMR {Escherichia coli}
Probab=98.55 E-value=3e-08 Score=90.07 Aligned_cols=108 Identities=13% Similarity=0.148 Sum_probs=77.7
Q ss_pred HHHHHHHHHHHHHHhCCCCCCCCeEeecCCccEEehhHHHHHHhCC---ChhhhhcccccccccccccccccccCcchHH
Q 002210 732 DKYTRIQGDYVGIVSSPSALIPPIFMTDEDGRCLEWNDGMEKLSGL---KREEAIERMLIGEVFTVKNFGCRVKNHDTLT 808 (953)
Q Consensus 732 ~~L~~se~~~~~i~e~~~~li~~I~~~D~~G~i~~~N~a~~~l~G~---~~eeliGk~~~~~~~~~~~~~~~l~~~~~~~ 808 (953)
+++++.+..++.+++++++ +++++|.+|+|+++|+++++++|| +.++++|+.+.. +++. ..
T Consensus 8 ~~l~~~~~~~~~il~~~~~---~i~~~d~~g~i~~~N~~~~~~~g~~~~~~~~~~g~~~~~-~~~~----------~~-- 71 (118)
T 2w0n_A 8 YEISTLFEQRQAMLQSIKE---GVVAVDDRGEVTLINDAAQELLNYRKSQDDEKLSTLSHS-WSQV----------VD-- 71 (118)
T ss_dssp HHHCTTHHHHHHHHHCCCC---CCEEEBTTTBCCCBCHHHHHHHCSCTTTTTSSCCCTTCC-CSCT----------HH--
T ss_pred HHHHHHHHHHHHHHhhccc---cEEEECCCCcEeehhHHHHHHhCCCccChhhhhccCccc-ccCc----------hh--
Confidence 3455667788999999988 899999999999999999999998 789999998753 2222 11
Q ss_pred HHHHHHHHHhcCCCcceEEEEEEccCCCEEEEEEEEEEeecCCCCEEEEEEEEEecc
Q 002210 809 KLRIVMNKVISGQDADKILFGFFDQQGKYVEALLSANKRTNAEGKISGILCFLHVAS 865 (953)
Q Consensus 809 ~~~~~l~~~~~g~~~~~~e~~~~~kdG~~~~v~~s~~pi~d~~G~i~g~v~v~~DIT 865 (953)
+...+. .+....... ...+| .|+.++..|+.+ +|++.|++++++|||
T Consensus 72 -~~~~~~---~~~~~~~~~---~~~~~--~~~~~~~~p~~~-~g~~~g~v~~~~DiT 118 (118)
T 2w0n_A 72 -VSEVLR---DGTPRRDEE---ITIKD--RLLLINTVPVRS-NGVIIGAISTFRDKT 118 (118)
T ss_dssp -HHHHHH---TTCCCCCCC---EESSS--CEECCCEECCCC-SSCCCCEEECCCCCC
T ss_pred -HHHHhc---cCceeccEE---EEECC--EEEEEeeceeee-CCEEEEEEEEEEeCC
Confidence 122222 222111112 23456 467788889987 888889999999998
No 133
>2jhe_A Transcription regulator TYRR; aromatic hydrocarbons catabolism, TYRR protei nucleotide-binding, transcription regulation, activator; HET: PG4; 2.30A {Escherichia coli}
Probab=98.50 E-value=7.4e-08 Score=97.11 Aligned_cols=109 Identities=17% Similarity=0.165 Sum_probs=80.2
Q ss_pred HHHHHHHHHHHhcCccEEEEcCCCcEEecCHHHHHHhCCCcchhcCCCccccccCCcHHHHHHHHHHHhcccceEEEEEE
Q 002210 608 IITNEMVRLIETAAVPILAVDASGNVNGWNSKAAELTGLTVDQAIGTALVDLVAGDSVDVVKNMLSSAFLEERNVEIKLR 687 (953)
Q Consensus 608 ~~~~~l~~lle~~~~~I~~~D~dg~i~~~N~a~~~l~G~~~~eliG~~~~dl~~~~~~~~~~~~l~~~l~~~~~~e~~~~ 687 (953)
+....+..+++++++||+++|.+|+|+++|++++++||++.++++|+++.+++++.... ..+.. ........++.
T Consensus 77 ~~~~~l~~il~~~~~gvi~~D~~g~I~~~N~aa~~llg~~~~~~~g~~~~~~~~~~~~~---~~~~~--~~~~~~~~~~~ 151 (190)
T 2jhe_A 77 REHLALSALLEALPEPVLSVDMKSKVDMANPASCQLFGQKLDRLRNHTAAQLINGFNFL---RWLES--EPQDSHNEHVV 151 (190)
T ss_dssp HHHHHHHHHHHHCSSCEEEECTTCBEEEECHHHHHHHTSCHHHHTTSBGGGTSTTCCHH---HHHHT--CCCSCEEEEEE
T ss_pred HHHHHHHHHHHhCCCcEEEEcCCCCEEEEcHHHHHHhCCCHHHhcCccHHHHhCCCCHH---HHHhc--CCCCCcceEEE
Confidence 44567889999999999999999999999999999999999999999999988765432 11111 11122222332
Q ss_pred EcccCCCCCEEEEEEEEEEeecCCCC----EEEEEEEEEecchhH
Q 002210 688 AFGPRETSGPVILVVNACCTQDTKEN----VIGVCFVGQDITGQK 728 (953)
Q Consensus 688 ~~~~~~dG~~~~v~v~~~pi~d~~g~----v~gvv~v~~DITerk 728 (953)
. +|. ++.++..|+.+.+|+ +.|++++++|||+++
T Consensus 152 ~-----~g~--~~~~~~~pi~~~~~~~~~~~~g~v~~~~DiTe~~ 189 (190)
T 2jhe_A 152 I-----NGQ--NFLMEITPVYLQDENDQHVLTGAVVMLRSTIRMG 189 (190)
T ss_dssp E-----TTE--EEEEEEEEETTTTEEEEEEEE-HHHHHHHHTTTC
T ss_pred E-----CCe--EEEEEEEEEEecCCCCcceEEeEEEEEeccchhc
Confidence 2 353 456788999875555 788888899999875
No 134
>4fpp_A Phosphotransferase; four helix bundle, bergerat fold, CCKA, CTRA, CPDR, bacterial cytoplasme; 2.20A {Caulobacter crescentus} PDB: 4fmt_A
Probab=98.44 E-value=1.6e-07 Score=99.41 Aligned_cols=84 Identities=10% Similarity=0.066 Sum_probs=47.0
Q ss_pred CCCEEEEEEEEEeccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHH
Q 002210 851 EGKISGILCFLHVASPELQYALQVQRISEQAAANSLNKLEYIRREIRKPLNGIAFMQNLMGTSDLSEEQKQLLKTSVLCQ 930 (953)
Q Consensus 851 ~G~i~g~v~v~~DITerK~~e~elq~~ae~~~~~k~~fla~isHELrnPL~~I~g~~~LL~~~~l~e~~~~~l~~i~~~~ 930 (953)
.|....+...++|+|.++..+.+++...- + .-+.+.|||||||||++|.+++++|.....++...++++.|.+++
T Consensus 17 ~g~~~~~~~~~~e~~~~~~~e~~~~~~~l-a----allas~IaHELrtPL~~I~~~~elL~~~~~~~~~~~~l~~I~~~~ 91 (247)
T 4fpp_A 17 RGSHNQMTETVTETTAPASPEADVQGPDF-A----AMLAARLCHDFISPASAIVSGLDLLEDPSAQDMRDDAMNLIASSA 91 (247)
T ss_dssp --------------------------CHH-H----HHHHHHHHHHHHHHHHHHHHHHHHHHCTTCGGGHHHHHHHHHHHH
T ss_pred CCcHHHHHHHHHHHHHHHHHHHHhhHHHH-H----HHHHhccCHHHhHHHHHHHHHHHHHhccCCchHHHHHHHHHHHHH
Confidence 34445566778999988876655443221 1 125678999999999999999999998888888889999999988
Q ss_pred HHHHhHhhh
Q 002210 931 EQLTNIVDD 939 (953)
Q Consensus 931 ~~L~~lI~D 939 (953)
+++..+++.
T Consensus 92 ~~~~~ll~~ 100 (247)
T 4fpp_A 92 RKLADLLQF 100 (247)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 888777754
No 135
>2c2a_A Sensor histidine kinase; phosphotransfer, PHOQ, selenomethionyl MAD, two-component systems, transferase; HET: ADP; 1.9A {Thermotoga maritima} SCOP: a.30.2.1 d.122.1.3 PDB: 3dge_A*
Probab=98.44 E-value=1.7e-07 Score=99.74 Aligned_cols=83 Identities=16% Similarity=0.170 Sum_probs=67.3
Q ss_pred EeccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhcCC---CCCHHHHHHHHHHHHHHHHHHhHhh
Q 002210 862 HVASPELQYALQVQRISEQAAANSLNKLEYIRREIRKPLNGIAFMQNLMGTS---DLSEEQKQLLKTSVLCQEQLTNIVD 938 (953)
Q Consensus 862 ~DITerK~~e~elq~~ae~~~~~k~~fla~isHELrnPL~~I~g~~~LL~~~---~l~e~~~~~l~~i~~~~~~L~~lI~ 938 (953)
.|||++++.+ ..++..+.|.+|++.++|||||||++|.+++++|... ...++.+++++.+..++++|..+++
T Consensus 2 ~~it~~~~~~-----~l~~~~~~~~~~~~~isHelrtPL~~i~~~~~~l~~~~~~~~~~~~~~~l~~i~~~~~~l~~li~ 76 (258)
T 2c2a_A 2 ENVTESKELE-----RLKRIDRMKTEFIANISHELRTPLTAIKAYAETIYNSLGELDLSTLKEFLEVIIDQSNHLENLLN 76 (258)
T ss_dssp CCHHHHHHHH-----HHHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHTGGGCCTTTTHHHHHHHHHHHHHHHHHHH
T ss_pred cchHHHHHHH-----HHHHHHHHHHHHHHHhhhhhcCCHHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5788877554 2233445677899999999999999999999998652 2345678999999999999999999
Q ss_pred h-hcccchhccc
Q 002210 939 D-TDIESIEEWY 949 (953)
Q Consensus 939 D-LdlsrIe~G~ 949 (953)
+ ++++|++.+.
T Consensus 77 ~ll~~~~~~~~~ 88 (258)
T 2c2a_A 77 ELLDFSRLERKS 88 (258)
T ss_dssp HHHHHHHHHHTC
T ss_pred HHHHHHHhhCCC
Confidence 9 8999998874
No 136
>3cax_A Uncharacterized protein PF0695; structural genomics, unknown function, PSI-2, protein struct initiative; 2.43A {Pyrococcus furiosus dsm 3638}
Probab=98.42 E-value=6.1e-07 Score=100.81 Aligned_cols=112 Identities=13% Similarity=0.166 Sum_probs=82.1
Q ss_pred HHHHHHhCCCCCCCCeEeecCCccEEehhHHHHHHhCCChhhhhcccccccccccccccccccCcchHHHHHHHHHHHhc
Q 002210 740 DYVGIVSSPSALIPPIFMTDEDGRCLEWNDGMEKLSGLKREEAIERMLIGEVFTVKNFGCRVKNHDTLTKLRIVMNKVIS 819 (953)
Q Consensus 740 ~~~~i~e~~~~li~~I~~~D~~G~i~~~N~a~~~l~G~~~eeliGk~~~~~~~~~~~~~~~l~~~~~~~~~~~~l~~~~~ 819 (953)
++.++++++++ +|+++|.+|+|+++|++ ++++ ++.++++|+++. .+++. .....+...+.....
T Consensus 240 ~l~~IL~~l~d---gIivvD~~g~I~~~N~a-e~i~-~~~~e~iGr~v~-~~~p~----------~~~~~~~~l~~~l~~ 303 (369)
T 3cax_A 240 ELKAIFEALPV---DVTFIDKDDRVRFFSPG-ERIF-TRTPSVLGRPVQ-LCHPP----------KSVYVVNKILKAFKE 303 (369)
T ss_dssp HHHHHHHHSSS---EEEEECTTSBEEEECCS-SCSS-CCCGGGTTCBTT-TSSCG----------GGHHHHHHHHHHHHH
T ss_pred HHHHHHHhCCC---cEEEECCCCcEEEEcCH-HHcc-CChHHHcCCcHH-HHCCh----------hhHHHHHHHHHHHHc
Confidence 46789999987 99999999999999999 9999 899999999986 34432 111112222222223
Q ss_pred CCCcceEEEEEEccCCCEEEEEEEEEEeecCCCCEEEEEEEEEeccHHHHHH
Q 002210 820 GQDADKILFGFFDQQGKYVEALLSANKRTNAEGKISGILCFLHVASPELQYA 871 (953)
Q Consensus 820 g~~~~~~e~~~~~kdG~~~~v~~s~~pi~d~~G~i~g~v~v~~DITerK~~e 871 (953)
|. ....++.+ .++| +++.++..|++|.+|+++|++++++|||+.++.+
T Consensus 304 g~-~~~~~~~~-~~~g--~~v~v~~~PI~d~~G~~~G~v~v~~DITe~~~le 351 (369)
T 3cax_A 304 GR-KKEATFWL-RLRE--KYVYIKYVPLFNEKGEYIGTLEMTMDIAPYKKIE 351 (369)
T ss_dssp TS-CSCEEEEE-EETT--EEEEEEEEEEECTTSCEEEEEEEEEECHHHHTCC
T ss_pred CC-ceEEEEEE-eeCC--EEEEEEEEEEECCCCCEEEEEEEEEcCHHHHHHH
Confidence 33 33334333 3456 5788999999999999999999999999987554
No 137
>1nwz_A PYP, photoactive yellow protein; PAS, LOV, GAF, domains fold, signaling protein; HET: HC4; 0.82A {Halorhodospira halophila} SCOP: d.110.3.1 PDB: 1kou_A* 1ot9_A* 1otb_A* 1s4r_A* 1s4s_A* 1ts0_A* 1ts6_A* 1ts7_A* 1ts8_A* 1uwn_X* 1uwp_X* 2d01_A* 2phy_A* 2pyp_A* 2pyr_A* 2qj5_A* 2qj7_A* 2qws_A* 2zoh_A* 2zoi_A* ...
Probab=98.40 E-value=2.1e-06 Score=79.63 Aligned_cols=101 Identities=16% Similarity=0.242 Sum_probs=70.4
Q ss_pred HHHHhCCCCCCCCeEeecCCccEEehhHHHHHHhCCChhhhhcccccccccccccccccccCcchHHHHHHHHHHHhcCC
Q 002210 742 VGIVSSPSALIPPIFMTDEDGRCLEWNDGMEKLSGLKREEAIERMLIGEVFTVKNFGCRVKNHDTLTKLRIVMNKVISGQ 821 (953)
Q Consensus 742 ~~i~e~~~~li~~I~~~D~~G~i~~~N~a~~~l~G~~~eeliGk~~~~~~~~~~~~~~~l~~~~~~~~~~~~l~~~~~g~ 821 (953)
..++++++. |++++|.+|+|++||+++++++||++++++|+++.+.+.+.. .......++...+. .|.
T Consensus 20 ~~~ld~l~~---Gii~lD~~g~I~~~N~~~e~~sG~~~~eviGk~~f~~~~~~~------~~~~f~~rf~~~~~---~g~ 87 (125)
T 1nwz_A 20 DGQLDGLAF---GAIQLDGDGNILQYNAAEGDITGRDPKQVIGKNFFKDVAPCT------DSPEFYGKFKEGVA---SGN 87 (125)
T ss_dssp HHHHTTCSS---EEEEEETTCBEEEECHHHHHHHCCCHHHHTTSBCCCCCCGGG------CSTTTHHHHHHHHH---HTC
T ss_pred HHHHhccCc---eEEEECCCCEEEEEHHHHHHHhCCCHHHHcCCchhhhccchh------cccHHHHHHHHHHh---cCc
Confidence 446888876 999999999999999999999999999999999875555432 12232233333332 333
Q ss_pred CcceEEEEEE-ccCCCEEEEEEEEEEeecCCCCEEEEE
Q 002210 822 DADKILFGFF-DQQGKYVEALLSANKRTNAEGKISGIL 858 (953)
Q Consensus 822 ~~~~~e~~~~-~kdG~~~~v~~s~~pi~d~~G~i~g~v 858 (953)
....+.+. +++|+ ++.++.....+.+|..++++
T Consensus 88 --l~~~~~~v~~~~~~--p~~v~i~l~~~~~~~~~~i~ 121 (125)
T 1nwz_A 88 --LNTMFEYTFDYQMT--PTKVKVHMKKALSGDSYWVF 121 (125)
T ss_dssp --CEEEEEEEECTTSC--CEEEEEEEEECSSSSEEEEE
T ss_pred --eeEEEEEEEcCCCC--EEEEEEEEEEcCCCCEEEEE
Confidence 34444444 88898 55555666677888887544
No 138
>2vjw_A GAF-B, GAF family protein; histidine kinase, hypoxia sensing, hydrolase; HET: MSE; 2.0A {Mycobacterium smegmatis} PDB: 2vks_A
Probab=98.40 E-value=5e-06 Score=80.51 Aligned_cols=128 Identities=15% Similarity=0.066 Sum_probs=95.4
Q ss_pred CHHHHHHHHHHHHHhhhCCCeEEEEeecCCCC---ceE-EEeecCCCCCCccCCCCCCCCccHHHHHHHHhCCceEeecC
Q 002210 215 NISLLCDVLVNEVSDLTGYDRVMVYKFHEDEH---GEV-VAECRRPDLEPYLGFHYPATDIPQASRFLIMKNKVRMICDC 290 (953)
Q Consensus 215 ~~~~l~~~~v~~vr~~~g~DRVmiY~F~~d~~---G~v-iaE~~~~~~~~~lg~~~pa~dip~~ar~ly~~n~~r~i~D~ 290 (953)
+++++++.+++.+++++|+|++.||-.+++.. |+. +.-+.....+.+.|..||-.. + -....+..++.-.|+|.
T Consensus 1 ~~~~~L~~i~~~a~~~~~ad~~~i~l~~~~~~~~~~~l~~~a~~g~~~~~~~~~~~~~~~-g-~~g~v~~~g~~v~v~d~ 78 (149)
T 2vjw_A 1 DPATVFRLVAAEALTLTGADGTLVAVPADPDASAAEELVIVEVAGAVPAEVEASAIPVQD-N-AIGQAFRDRAPRRLDVL 78 (149)
T ss_dssp CTHHHHHHHHHHHHHHHCCSEEEEEEECC----CCSEEEEEEEEETSCGGGTTCEEESSS-S-HHHHHHHHCCCEEESCC
T ss_pred CHHHHHHHHHHHHHHHhCCCEEEEEEEcCCCCCcCceEEEEEEecCChHhhcCcccCCCC-C-HHHHHhhcCceEEecCc
Confidence 45789999999999999999999999988741 333 333334444556788887643 2 33455677777778885
Q ss_pred CCCCceeeeCCCCCCccccCCccccCCChhHHHHhhhcCCeeEEEEEEEEeCCcccccccccCCCceeEEEeeecC-CCC
Q 002210 291 LAPPVKVIQDKKLDQPLSLCGSTLRAPHGCHARYMENMGSIASLVMSVTINEAEDELDNDQEQGRKLWGLVVCHHT-SPR 369 (953)
Q Consensus 291 ~~~~~~l~~~~~~~~~ldl~~s~lr~~s~~h~~yl~nmgv~asl~~~i~~~~~~~~~~~~~~~~~~LWGLi~~hh~-~pr 369 (953)
...| |+++.|++||..+ ++.-|.|..++. .|+
T Consensus 79 ~~d~----------------------------------~~~s~l~vPL~~~-------------~~~~GvL~l~~~~~~~ 111 (149)
T 2vjw_A 79 DGPG----------------------------------LGGPALVLPLRAT-------------DTVAGVLVAVQGSGAR 111 (149)
T ss_dssp CTTS----------------------------------CEEEEEEEEEEET-------------TEEEEEEEEEEETTCC
T ss_pred ccCC----------------------------------CCCeEEEEEEccC-------------CeEEEEEEEeeCCCCC
Confidence 4322 6899999999977 899999999998 788
Q ss_pred CCChhHHHHHHHHHHHHHHhhH
Q 002210 370 FVPFPLRYACEFLIQVFGVQVN 391 (953)
Q Consensus 370 ~~~~~~r~~~~~l~~~~~~~l~ 391 (953)
.++......++.|+.+.++.|.
T Consensus 112 ~f~~~d~~ll~~lA~~aa~al~ 133 (149)
T 2vjw_A 112 PFTAEQLEMMTGFADQAAVAWQ 133 (149)
T ss_dssp CCCHHHHHHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHHHHH
Confidence 8998888888888887776664
No 139
>3a0s_A Sensor protein; PAS-fold, kinase, phosphoprotein, transferase, two-component regulatory system; HET: PG4 PGE; 1.47A {Thermotoga maritima} PDB: 3a0v_A*
Probab=98.40 E-value=1.3e-06 Score=74.86 Aligned_cols=92 Identities=23% Similarity=0.339 Sum_probs=64.5
Q ss_pred CeEeecCCccEEehhHHHHHHhCCChhhhhcccccccccccccccccccCcchHHHHHHHHHHHhcCCCcceEEEEEEcc
Q 002210 754 PIFMTDEDGRCLEWNDGMEKLSGLKREEAIERMLIGEVFTVKNFGCRVKNHDTLTKLRIVMNKVISGQDADKILFGFFDQ 833 (953)
Q Consensus 754 ~I~~~D~~G~i~~~N~a~~~l~G~~~eeliGk~~~~~~~~~~~~~~~l~~~~~~~~~~~~l~~~~~g~~~~~~e~~~~~k 833 (953)
+|+++|.+|+++++|+++++++|++.++++|+++... +.. .. +...+......+.. +++.. +
T Consensus 4 ~i~~~d~~g~i~~~N~~~~~l~g~~~~~~~g~~~~~~--~~~---------~~---~~~~~~~~~~~~~~--~~~~~--~ 65 (96)
T 3a0s_A 4 AIITLSKDGRITEWNKKAEQLFGLKKENVLGRRLKDL--PDF---------EE---IGSVAESVFENKEP--VFLNF--Y 65 (96)
T ss_dssp EEEEEETTSBEEEECHHHHHHHCCCHHHHTTSBGGGS--TTC---------HH---HHHHHHHHHHHTCC--EEEEE--E
T ss_pred eEEEEcCCCCEeehhHHHHHHhCCCHHHhcCCCHHHC--cch---------HH---HHHHHHHHhccCCe--EEEEE--E
Confidence 8999999999999999999999999999999987532 211 11 22223333332322 23222 2
Q ss_pred CCCEEEEEEEEEEeecCCCC-EEEEEEEEEe
Q 002210 834 QGKYVEALLSANKRTNAEGK-ISGILCFLHV 863 (953)
Q Consensus 834 dG~~~~v~~s~~pi~d~~G~-i~g~v~v~~D 863 (953)
+|..+|+.++..|+.+.+|. +.|++++++|
T Consensus 66 ~~~~~~~~~~~~p~~~~~~~~~~g~v~~~~D 96 (96)
T 3a0s_A 66 KFGERYFNIRFSPFRNAKTQLLEGVIITIDD 96 (96)
T ss_dssp EETTEEEEEEEEEEECTTTCCEEEEEEEEEC
T ss_pred cCCcEEEEEEEEEeEcCCCCeeeEEEEEecC
Confidence 44557899999999988665 6789988887
No 140
>4dj3_A Period circadian protein homolog 3; PAS domain, circadian rhythm, protein binding; 2.50A {Mus musculus}
Probab=98.39 E-value=1.1e-06 Score=95.96 Aligned_cols=124 Identities=11% Similarity=0.042 Sum_probs=98.4
Q ss_pred ccEEEEcCCCcEEecCHHHHHHhCCCcchhcCCCccccccCCcHHHHHHHHHHHhcc-cc-e-EEEEEEEcccCCCCCEE
Q 002210 622 VPILAVDASGNVNGWNSKAAELTGLTVDQAIGTALVDLVAGDSVDVVKNMLSSAFLE-ER-N-VEIKLRAFGPRETSGPV 698 (953)
Q Consensus 622 ~~I~~~D~dg~i~~~N~a~~~l~G~~~~eliG~~~~dl~~~~~~~~~~~~l~~~l~~-~~-~-~e~~~~~~~~~~dG~~~ 698 (953)
..+...+.+|+++++|+++..++||.++|++|+++.+++|++|.+.+.+.+..++.. +. . ....++. +++||..+
T Consensus 175 ~Fitrh~~dG~~~yvs~~~~~lLGY~peELig~s~~~~vHPdD~~~~~~~~~~~l~~~~~~~f~s~~yR~--~~kdG~~v 252 (317)
T 4dj3_A 175 IFTTTHTPGCVFLEVDERAVPLLGYLPQDLIGTSILTYLHPEDRPLMVAIHQKVLKYAGHPPFEHSPVRF--CTQNGEYV 252 (317)
T ss_dssp EEEEEECTTSBEEEECTTHHHHHSCCHHHHTTSBGGGGBCTTTTTHHHHHHHHHHHTTTSCCEECCCEEE--ECTTSCEE
T ss_pred ceEEEecCCCeEEEEChHHhhhcCcChHHHcCCCHHHeECHHHHHHHHHHHHHHHHcCCCccccceEEEE--EccCCCEE
Confidence 457778999999999999999999999999999999999999999888888888843 33 1 2234444 56799999
Q ss_pred EEEEEEEEeecC-CCCEEEEEEEEE--------e-----cchhHHHHHHHHHHHHHHHHHHhC
Q 002210 699 ILVVNACCTQDT-KENVIGVCFVGQ--------D-----ITGQKLVMDKYTRIQGDYVGIVSS 747 (953)
Q Consensus 699 ~v~v~~~pi~d~-~g~v~gvv~v~~--------D-----ITerk~~E~~L~~se~~~~~i~e~ 747 (953)
|+.....++++. .+++..++++-+ | +++++..+.++++++++++.++-.
T Consensus 253 wvet~~~~~~np~s~~~e~II~~h~v~~~p~~~dvf~~~~~~~~~~~~~~~~~~~~~~~~~~~ 315 (317)
T 4dj3_A 253 ILDSSWSSFVNPWSRKVSFIIGRHKVRTSPLNEDVFATRIKKAASNDKDIAELQEQIHKLLLQ 315 (317)
T ss_dssp EEEEEEEEEECSSSCCEEEEEEEEEECCCCSSSCTTCCCCCCCSSCCHHHHHHHHHHHHHTTS
T ss_pred EEEEEEEEEECCCCCcccEEEEEEEeccCCCCCCcccCCccchhccchhHHHHHHHHHHHhcC
Confidence 999999999986 466667777766 4 345666777788888887776644
No 141
>1nwz_A PYP, photoactive yellow protein; PAS, LOV, GAF, domains fold, signaling protein; HET: HC4; 0.82A {Halorhodospira halophila} SCOP: d.110.3.1 PDB: 1kou_A* 1ot9_A* 1otb_A* 1s4r_A* 1s4s_A* 1ts0_A* 1ts6_A* 1ts7_A* 1ts8_A* 1uwn_X* 1uwp_X* 2d01_A* 2phy_A* 2pyp_A* 2pyr_A* 2qj5_A* 2qj7_A* 2qws_A* 2zoh_A* 2zoi_A* ...
Probab=98.38 E-value=1.2e-06 Score=81.29 Aligned_cols=101 Identities=15% Similarity=0.157 Sum_probs=71.9
Q ss_pred HHHHHhcCccEEEEcCCCcEEecCHHHHHHhCCCcchhcCCCccccc-cCCcHHHHHHHHHHHhcccc-eEEEEEEEccc
Q 002210 614 VRLIETAAVPILAVDASGNVNGWNSKAAELTGLTVDQAIGTALVDLV-AGDSVDVVKNMLSSAFLEER-NVEIKLRAFGP 691 (953)
Q Consensus 614 ~~lle~~~~~I~~~D~dg~i~~~N~a~~~l~G~~~~eliG~~~~dl~-~~~~~~~~~~~l~~~l~~~~-~~e~~~~~~~~ 691 (953)
..++++++.|++++|.+|+|++||+++++++|+++++++|+++.+.+ +......+...+.+.+..+. ...+.+. .
T Consensus 20 ~~~ld~l~~Gii~lD~~g~I~~~N~~~e~~sG~~~~eviGk~~f~~~~~~~~~~~f~~rf~~~~~~g~l~~~~~~v---~ 96 (125)
T 1nwz_A 20 DGQLDGLAFGAIQLDGDGNILQYNAAEGDITGRDPKQVIGKNFFKDVAPCTDSPEFYGKFKEGVASGNLNTMFEYT---F 96 (125)
T ss_dssp HHHHTTCSSEEEEEETTCBEEEECHHHHHHHCCCHHHHTTSBCCCCCCGGGCSTTTHHHHHHHHHHTCCEEEEEEE---E
T ss_pred HHHHhccCceEEEECCCCEEEEEHHHHHHHhCCCHHHHcCCchhhhccchhcccHHHHHHHHHHhcCceeEEEEEE---E
Confidence 34799999999999999999999999999999999999999998743 33344444555555553332 3233333 2
Q ss_pred CCCCCEEEEEEEEEEeecCCCCEEEEEE
Q 002210 692 RETSGPVILVVNACCTQDTKENVIGVCF 719 (953)
Q Consensus 692 ~~dG~~~~v~v~~~pi~d~~g~v~gvv~ 719 (953)
+++|++.. ++.....+.+|...+++.
T Consensus 97 ~~~~~p~~--v~i~l~~~~~~~~~~i~v 122 (125)
T 1nwz_A 97 DYQMTPTK--VKVHMKKALSGDSYWVFV 122 (125)
T ss_dssp CTTSCCEE--EEEEEEECSSSSEEEEEE
T ss_pred cCCCCEEE--EEEEEEEcCCCCEEEEEE
Confidence 44677555 555666677888777653
No 142
>2w3g_A DOSS, two component sensor histidine kinase DEVS (GAF family protein); redox sensor, heme, hypoxia, GAF domain, transferase; HET: HEM; 1.40A {Mycobacterium tuberculosis} PDB: 2w3d_A* 2w3f_A* 2w3e_A* 2w3h_A* 2y79_A* 2y8h_A* 2vzw_A*
Probab=98.37 E-value=1e-06 Score=84.53 Aligned_cols=140 Identities=13% Similarity=0.001 Sum_probs=97.7
Q ss_pred CCCHHHHHHHHHHHHHhhhCCCeEEEEeecCCCCceEEEeecCCCCCCccC-CCCCCCCccHHHHHHHHhCCceEeecCC
Q 002210 213 SGNISLLCDVLVNEVSDLTGYDRVMVYKFHEDEHGEVVAECRRPDLEPYLG-FHYPATDIPQASRFLIMKNKVRMICDCL 291 (953)
Q Consensus 213 ~~~~~~l~~~~v~~vr~~~g~DRVmiY~F~~d~~G~viaE~~~~~~~~~lg-~~~pa~dip~~ar~ly~~n~~r~i~D~~ 291 (953)
+.+++++++.+++.+++++|+|++.||-+++++.-.+.+-.- ..-+.+.. .++|..+ .-....+..++.-++.|..
T Consensus 4 ~~~~~~~l~~i~~~~~~~~~~~~~~i~l~d~~~~l~~~~~~g-~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~d~~ 80 (153)
T 2w3g_A 4 DPDLEATLRAIVHSATSLVDARYGAMEVHDRQHRVLHFVYEG-IDEETVRRIGHLPKGL--GVIGLLIEDPKPLRLDDVS 80 (153)
T ss_dssp CHHHHHHHHHHHHHHHHHTTEEEEEEEEECTTCCEEEEEEES-CCHHHHHHHCSCCCSC--THHHHHHHSCSCEEESSGG
T ss_pred ccCHHHHHHHHHHHHHHHhCCCEEEEEEECCCCCEEEEEEec-CCHHHHHhhccCCCCC--CHHHHHHhcCCcEEecCcc
Confidence 457899999999999999999999999999664433333221 11111111 2444432 2345566777777888743
Q ss_pred CCCceeeeCCCCCCccccCCccccCCChhHHHHhhhcCCeeEEEEEEEEeCCcccccccccCCCceeEEEeeecCCC-CC
Q 002210 292 APPVKVIQDKKLDQPLSLCGSTLRAPHGCHARYMENMGSIASLVMSVTINEAEDELDNDQEQGRKLWGLVVCHHTSP-RF 370 (953)
Q Consensus 292 ~~~~~l~~~~~~~~~ldl~~s~lr~~s~~h~~yl~nmgv~asl~~~i~~~~~~~~~~~~~~~~~~LWGLi~~hh~~p-r~ 370 (953)
..|-- . .. +. ...++++.+++||+.+ |+++|.|.+++..+ +.
T Consensus 81 ~~~~~-------~-----------~~-~~-----~~~~~~s~l~vPl~~~-------------~~~~Gvl~l~~~~~~~~ 123 (153)
T 2w3g_A 81 AHPAS-------I-----------GF-PP-----YHPPMRTFLGVPVRVR-------------DESFGTLYLTDKTNGQP 123 (153)
T ss_dssp GSTTC-------C-----------CC-CT-----TCCCCCCEEEEEEEET-------------TEEEEEEEEEEETTSCC
T ss_pred cCchh-------c-----------CC-CC-----cCCCCCeEEEeeEEEC-------------CEEEEEEEEeeCCCCCC
Confidence 32210 0 00 10 3458899999999977 89999999999987 79
Q ss_pred CChhHHHHHHHHHHHHHHhhHH
Q 002210 371 VPFPLRYACEFLIQVFGVQVNK 392 (953)
Q Consensus 371 ~~~~~r~~~~~l~~~~~~~l~~ 392 (953)
++......++.++.+++..|..
T Consensus 124 f~~~~~~~l~~la~~~a~ai~~ 145 (153)
T 2w3g_A 124 FSDDDEVLVQALAAAAGIAVAN 145 (153)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999988887753
No 143
>1mzu_A PPR; photoactive yellow protein, PAS, PYP, signaling protein; HET: HC4; 2.00A {Rhodospirillum centenum} SCOP: d.110.3.1
Probab=98.36 E-value=3e-06 Score=78.77 Aligned_cols=100 Identities=16% Similarity=0.084 Sum_probs=69.2
Q ss_pred HHHhCCCCCCCCeEeecCCccEEehhHHHHHHhCCChhhhhcccccccccccccccccccCcchHHHHHHHHHHHhcCCC
Q 002210 743 GIVSSPSALIPPIFMTDEDGRCLEWNDGMEKLSGLKREEAIERMLIGEVFTVKNFGCRVKNHDTLTKLRIVMNKVISGQD 822 (953)
Q Consensus 743 ~i~e~~~~li~~I~~~D~~G~i~~~N~a~~~l~G~~~eeliGk~~~~~~~~~~~~~~~l~~~~~~~~~~~~l~~~~~g~~ 822 (953)
.++++++. |++++|.+|+|++||+++++++||++++++|+++.+.+.+.. ..... ...+......+.
T Consensus 26 ~~ld~l~~---GiivlD~dg~I~~~N~~~e~isG~s~eeviGk~~f~~~~p~~------~~~~f----~grf~~~~~~G~ 92 (129)
T 1mzu_A 26 AEFDALPV---GAIQVDGSGVIHRYNRTESRLSGRIPERVIGRNFFTEVAPCT------NIPAF----SGRFMDGVTSGT 92 (129)
T ss_dssp TTGGGCSS---EEEEEETTCBEEEECHHHHHHHCCCHHHHTTSBCCCCCCGGG------CSTTT----HHHHHHHHHTSC
T ss_pred HHHhccCc---eEEEECCCCeEEEEHHHHHHHhCCCHHHHcCCchhhhccchh------cccHH----HHHHHHHHhcCc
Confidence 35788776 999999999999999999999999999999999875555432 11222 223333333332
Q ss_pred cceEEEEEE-ccCCCEEEEEEEEEEeecCCCCEEEEE
Q 002210 823 ADKILFGFF-DQQGKYVEALLSANKRTNAEGKISGIL 858 (953)
Q Consensus 823 ~~~~e~~~~-~kdG~~~~v~~s~~pi~d~~G~i~g~v 858 (953)
....+.+. +++|+ ++.++.....+.+|..++++
T Consensus 93 -l~~~~~yv~~~~~~--p~~v~i~l~~~~~~~~~~i~ 126 (129)
T 1mzu_A 93 -LDARFDFVFDFQMA--PVRVQIRMQNAGVPDRYWIF 126 (129)
T ss_dssp -CEEEEEEEEECSSC--EEEEEEEEEECSSTTEEEEE
T ss_pred -eeEEEEEEEcCCCC--EEEEEEEEEEcCCCCEEEEE
Confidence 34444444 88888 55555666667888887544
No 144
>2jhe_A Transcription regulator TYRR; aromatic hydrocarbons catabolism, TYRR protei nucleotide-binding, transcription regulation, activator; HET: PG4; 2.30A {Escherichia coli}
Probab=98.34 E-value=2.6e-07 Score=93.09 Aligned_cols=106 Identities=11% Similarity=0.087 Sum_probs=75.2
Q ss_pred HHHHHHHHhCCCCCCCCeEeecCCccEEehhHHHHHHhCCChhhhhcccccccccccccccccccCcchHHHHHHHHHHH
Q 002210 738 QGDYVGIVSSPSALIPPIFMTDEDGRCLEWNDGMEKLSGLKREEAIERMLIGEVFTVKNFGCRVKNHDTLTKLRIVMNKV 817 (953)
Q Consensus 738 e~~~~~i~e~~~~li~~I~~~D~~G~i~~~N~a~~~l~G~~~eeliGk~~~~~~~~~~~~~~~l~~~~~~~~~~~~l~~~ 817 (953)
...++.+++++++ +++++|.+|+|+++|+++++++|++.++++|+++.. +++. .. +...+.
T Consensus 79 ~~~l~~il~~~~~---gvi~~D~~g~I~~~N~aa~~llg~~~~~~~g~~~~~-~~~~----------~~---~~~~~~-- 139 (190)
T 2jhe_A 79 HLALSALLEALPE---PVLSVDMKSKVDMANPASCQLFGQKLDRLRNHTAAQ-LING----------FN---FLRWLE-- 139 (190)
T ss_dssp HHHHHHHHHHCSS---CEEEECTTCBEEEECHHHHHHHTSCHHHHTTSBGGG-TSTT----------CC---HHHHHH--
T ss_pred HHHHHHHHHhCCC---cEEEEcCCCCEEEEcHHHHHHhCCCHHHhcCccHHH-HhCC----------CC---HHHHHh--
Confidence 4468889999988 999999999999999999999999999999998753 3332 11 111222
Q ss_pred hcCC-CcceEEEEEEccCCCEEEEEEEEEEeecCCCC----EEEEEEEEEeccHHH
Q 002210 818 ISGQ-DADKILFGFFDQQGKYVEALLSANKRTNAEGK----ISGILCFLHVASPEL 868 (953)
Q Consensus 818 ~~g~-~~~~~e~~~~~kdG~~~~v~~s~~pi~d~~G~----i~g~v~v~~DITerK 868 (953)
.+. .....++.+ +|. ++.++..|+.+.+|+ +.|++++++|||+.+
T Consensus 140 -~~~~~~~~~~~~~---~g~--~~~~~~~pi~~~~~~~~~~~~g~v~~~~DiTe~~ 189 (190)
T 2jhe_A 140 -SEPQDSHNEHVVI---NGQ--NFLMEITPVYLQDENDQHVLTGAVVMLRSTIRMG 189 (190)
T ss_dssp -TCCCSCEEEEEEE---TTE--EEEEEEEEETTTTEEEEEEEE-HHHHHHHHTTTC
T ss_pred -cCCCCCcceEEEE---CCe--EEEEEEEEEEecCCCCcceEEeEEEEEeccchhc
Confidence 122 222333322 675 456778899876665 788888999999864
No 145
>1mzu_A PPR; photoactive yellow protein, PAS, PYP, signaling protein; HET: HC4; 2.00A {Rhodospirillum centenum} SCOP: d.110.3.1
Probab=98.33 E-value=1.7e-06 Score=80.49 Aligned_cols=99 Identities=14% Similarity=0.195 Sum_probs=70.7
Q ss_pred HHHhcCccEEEEcCCCcEEecCHHHHHHhCCCcchhcCCCccccc-cCCcHHHHHHHHHHHhcccc-eEEEEEEEcccCC
Q 002210 616 LIETAAVPILAVDASGNVNGWNSKAAELTGLTVDQAIGTALVDLV-AGDSVDVVKNMLSSAFLEER-NVEIKLRAFGPRE 693 (953)
Q Consensus 616 lle~~~~~I~~~D~dg~i~~~N~a~~~l~G~~~~eliG~~~~dl~-~~~~~~~~~~~l~~~l~~~~-~~e~~~~~~~~~~ 693 (953)
++++++.||+++|.+|+|++||.+++++.|+++++++|+++.+.+ +......+...+.+.+..+. ...+.+.. ++
T Consensus 27 ~ld~l~~GiivlD~dg~I~~~N~~~e~isG~s~eeviGk~~f~~~~p~~~~~~f~grf~~~~~~G~l~~~~~yv~---~~ 103 (129)
T 1mzu_A 27 EFDALPVGAIQVDGSGVIHRYNRTESRLSGRIPERVIGRNFFTEVAPCTNIPAFSGRFMDGVTSGTLDARFDFVF---DF 103 (129)
T ss_dssp TGGGCSSEEEEEETTCBEEEECHHHHHHHCCCHHHHTTSBCCCCCCGGGCSTTTHHHHHHHHHTSCCEEEEEEEE---EC
T ss_pred HHhccCceEEEECCCCeEEEEHHHHHHHhCCCHHHHcCCchhhhccchhcccHHHHHHHHHHhcCceeEEEEEEE---cC
Confidence 689999999999999999999999999999999999999998743 33344444555555553332 32333332 33
Q ss_pred CCCEEEEEEEEEEeecCCCCEEEEEE
Q 002210 694 TSGPVILVVNACCTQDTKENVIGVCF 719 (953)
Q Consensus 694 dG~~~~v~v~~~pi~d~~g~v~gvv~ 719 (953)
+|++.. ++.....+.+|...+++.
T Consensus 104 ~~~p~~--v~i~l~~~~~~~~~~i~v 127 (129)
T 1mzu_A 104 QMAPVR--VQIRMQNAGVPDRYWIFV 127 (129)
T ss_dssp SSCEEE--EEEEEEECSSTTEEEEEE
T ss_pred CCCEEE--EEEEEEEcCCCCEEEEEE
Confidence 577544 556666677888777653
No 146
>1ykd_A Adenylate cyclase; GAF domain, bound cyclic AMP ligand, lyase; HET: CMP; 1.90A {Anabaena SP}
Probab=98.33 E-value=7.9e-06 Score=92.57 Aligned_cols=140 Identities=13% Similarity=0.087 Sum_probs=102.4
Q ss_pred CCHHHHHHHHHHHHHhhhCCCeEEEEeecCCCCceEEEeecCCCCCCccCCCCCCCCccHHHHHHHHhCCceEee-cCCC
Q 002210 214 GNISLLCDVLVNEVSDLTGYDRVMVYKFHEDEHGEVVAECRRPDLEPYLGFHYPATDIPQASRFLIMKNKVRMIC-DCLA 292 (953)
Q Consensus 214 ~~~~~l~~~~v~~vr~~~g~DRVmiY~F~~d~~G~viaE~~~~~~~~~lg~~~pa~dip~~ar~ly~~n~~r~i~-D~~~ 292 (953)
.+++++++.+++.+++++|+||+.||.+++++.. .......++. ...+.++|.. ..-+...+..++.-.|+ |+..
T Consensus 213 ~dl~~~l~~i~~~~~~~~~~~~~~i~l~d~~~~~-l~~~~~~~~~-~~~~~~~~~~--~~~~~~v~~~~~~~~i~~d~~~ 288 (398)
T 1ykd_A 213 LDLEDTLKRVMDEAKELMNADRSTLWLIDRDRHE-LWTKITQDNG-STKELRVPIG--KGFAGIVAASGQKLNIPFDLYD 288 (398)
T ss_dssp CCHHHHHHHHHHHHHHHTTEEEEEEEEEETTTTE-EEEEEECSSS-CEEEEEEETT--SHHHHHHHHHCCCEEECSCGGG
T ss_pred CCHHHHHHHHHHHHHHHhCcCeEEEEEEECCCCE-EEEEEecCCC-ceeeeeccCC--CchhhHHhccCCeEEecccccc
Confidence 4899999999999999999999999999998744 4333332221 2223345543 23455678888888888 8433
Q ss_pred CCceeeeCCCCCCccccCCccccCCChhH--HHHhhhcCCeeEEEEEEE-EeCCcccccccccCCCceeEEEeeecCC--
Q 002210 293 PPVKVIQDKKLDQPLSLCGSTLRAPHGCH--ARYMENMGSIASLVMSVT-INEAEDELDNDQEQGRKLWGLVVCHHTS-- 367 (953)
Q Consensus 293 ~~~~l~~~~~~~~~ldl~~s~lr~~s~~h--~~yl~nmgv~asl~~~i~-~~~~~~~~~~~~~~~~~LWGLi~~hh~~-- 367 (953)
.| .. ..+ ..-...+++++.|++||+ .+ |++||.|.++++.
T Consensus 289 ~~-------~~---------------~~~~~~~~~~~~~~~s~l~vPl~~~~-------------~~~iGvl~l~~~~~~ 333 (398)
T 1ykd_A 289 HP-------DS---------------ATAKQIDQQNGYRTCSLLCMPVFNGD-------------QELIGVTQLVNKKKT 333 (398)
T ss_dssp ST-------TC---------------HHHHHHHHHHTCCCCCEEEEEEECSS-------------SCEEEEEEEEEECCS
T ss_pred Cc-------cc---------------CcccchhhhcCCeeeeEEEEeeecCC-------------CCEEEEEEEEecCCc
Confidence 22 10 222 222346678999999999 46 8999999999987
Q ss_pred ------------------CCCCChhHHHHHHHHHHHHHHhhHH
Q 002210 368 ------------------PRFVPFPLRYACEFLIQVFGVQVNK 392 (953)
Q Consensus 368 ------------------pr~~~~~~r~~~~~l~~~~~~~l~~ 392 (953)
|+.|+.....+++.++.+++..|..
T Consensus 334 ~~~~~~~~~~~~~~~~~~~~~f~~~d~~ll~~la~~~a~al~n 376 (398)
T 1ykd_A 334 GEFPPYNPETWPIAPECFQASFDRNDEEFMEAFNIQAGVALQN 376 (398)
T ss_dssp SCCCCCCGGGTTCCCGGGCCCCCHHHHHHHHHHHHHHHHHHHH
T ss_pred ccccccccccccccccccCCCCCHHHHHHHHHHHHHHHHHHHH
Confidence 8999999999999999988887754
No 147
>3rty_A Period circadian protein; PAS domain, signalling, timeless, circadian clock protein; 2.85A {Drosophila melanogaster} PDB: 1wa9_A 3gec_A
Probab=98.26 E-value=2.6e-06 Score=94.03 Aligned_cols=105 Identities=14% Similarity=0.117 Sum_probs=85.8
Q ss_pred CccEEEEcCCCcEEecCHHHHHHhCCCcchhcCCCccccccCCcHHHHHHHHHHHhcccce-----EEEEEEEcccCCCC
Q 002210 621 AVPILAVDASGNVNGWNSKAAELTGLTVDQAIGTALVDLVAGDSVDVVKNMLSSAFLEERN-----VEIKLRAFGPRETS 695 (953)
Q Consensus 621 ~~~I~~~D~dg~i~~~N~a~~~l~G~~~~eliG~~~~dl~~~~~~~~~~~~l~~~l~~~~~-----~e~~~~~~~~~~dG 695 (953)
.+.++..|.+|+++++|+++..++||+++|++|+++.+++||+|.+.+...+...+..+.. ...+++. +++||
T Consensus 154 ~~fi~r~~~dG~~~yvn~~~~~lLGY~peELiG~s~~~~vHPdD~~~~~~~~~~~l~~G~~~~~~~~s~~yR~--~~kdG 231 (339)
T 3rty_A 154 PKFAIRHTATGIISHVDSAAVSALGYLPQDLIGRSIMDFYHHEDLSVMKETYETVMKKGQTAGASFCSKPYRF--LIQNG 231 (339)
T ss_dssp CEEEEEEETTCBEEEECTTHHHHHCCCHHHHTTSBGGGGBCGGGHHHHHHHHHHHHHHTTSTTCCCBCCCEEE--ECTTS
T ss_pred ceEEEEECCCCeEEEcChhhhcccCCCHHHHcCCcHHHEECHHHHHHHHHHHHHHHHcCCcccccccceEEEE--EccCC
Confidence 4678889999999999999999999999999999999999999999888888887743332 1223333 56689
Q ss_pred CEEEEEEEEEEeecCC-CCEEEEEEEEEecchh
Q 002210 696 GPVILVVNACCTQDTK-ENVIGVCFVGQDITGQ 727 (953)
Q Consensus 696 ~~~~v~v~~~pi~d~~-g~v~gvv~v~~DITer 727 (953)
..+|+..+..+++|.. +++..++++-+.|+..
T Consensus 232 ~~vWlet~~~~~~np~s~~~~~II~~h~vi~~p 264 (339)
T 3rty_A 232 CYVLLETEWTSFVNPWSRKLEFVVGHHRVFQGP 264 (339)
T ss_dssp CEEEEEEEEEEEECTTTCSEEEEEEEEEEEECC
T ss_pred CEEEEEEEEEEEECCCCCCeeEEEEEEEECCCC
Confidence 9999999999999864 5677788887777654
No 148
>2ykf_A Pdtas, probable sensor histidine kinase pdtas; transferase, two-component system, GAF domain, PAS domain; 2.00A {Mycobacterium tuberculosis} PDB: 2ykh_A
Probab=97.51 E-value=1.8e-07 Score=102.22 Aligned_cols=121 Identities=15% Similarity=0.141 Sum_probs=85.5
Q ss_pred HHHHhcCccEEEEcCCCcEEecCHHHHHHhC---CCcchhcCCCccccccCC---cHH--HHHHHHHHHhcc-cceEEEE
Q 002210 615 RLIETAAVPILAVDASGNVNGWNSKAAELTG---LTVDQAIGTALVDLVAGD---SVD--VVKNMLSSAFLE-ERNVEIK 685 (953)
Q Consensus 615 ~lle~~~~~I~~~D~dg~i~~~N~a~~~l~G---~~~~eliG~~~~dl~~~~---~~~--~~~~~l~~~l~~-~~~~e~~ 685 (953)
.+++++++||+++|.+|+|+++|++++++|| ++ ++++|+++.++++.. ... .+...+..++.+ ......+
T Consensus 174 ~~~~~~~dGIivvD~~G~Ii~~N~aA~~ll~~lG~~-~~~iGk~l~el~~~~~~~~~~~~~~~~~l~~vl~~~~~~~~~e 252 (305)
T 2ykf_A 174 RSSPRAGDGFIRLDVDGVVSYASPNALSAYHRMGLT-TELEGVNLIDATRPLISDPFEAHEVDEHVQDLLAGDGKGMRME 252 (305)
Confidence 4577999999999999999999999999985 44 788999999887643 111 122222223322 2222222
Q ss_pred EEEcccCCCCCEEEEEEEEEEeecCCCCEEEEEEEEEecchhHHHHHHHHHHHHHHHHH
Q 002210 686 LRAFGPRETSGPVILVVNACCTQDTKENVIGVCFVGQDITGQKLVMDKYTRIQGDYVGI 744 (953)
Q Consensus 686 ~~~~~~~~dG~~~~v~v~~~pi~d~~g~v~gvv~v~~DITerk~~E~~L~~se~~~~~i 744 (953)
+. ....++.++..|+.+ +|++.|++.+++|||+.++.|++|+......+.|
T Consensus 253 i~-------~~~~~l~v~~~Pi~~-~g~~~G~Vvv~rDITE~~~lE~eL~~K~~~IrEI 303 (305)
T 2ykf_A 253 VD-------AGGATVLLRTLPLVV-AGRNVGAAILIRDVTEVKRRDRALISKDATIREI 303 (305)
Confidence 11 123567788899987 6888999999999999999999987665555443
No 149
>3ibj_A CGMP-dependent 3',5'-cyclic phosphodiesterase; PDE2A, GAF-domains, allosteric regulation hydrolase, membrane; 3.02A {Homo sapiens}
Probab=98.15 E-value=2e-05 Score=96.10 Aligned_cols=141 Identities=12% Similarity=0.143 Sum_probs=105.2
Q ss_pred CCHHHHHHHHHHHHHhhhCCCeEEEEeecCCCCceEEEeecCCCCC--CccCCCCCCCCccHHHHHHHHhCCceEeecCC
Q 002210 214 GNISLLCDVLVNEVSDLTGYDRVMVYKFHEDEHGEVVAECRRPDLE--PYLGFHYPATDIPQASRFLIMKNKVRMICDCL 291 (953)
Q Consensus 214 ~~~~~l~~~~v~~vr~~~g~DRVmiY~F~~d~~G~viaE~~~~~~~--~~lg~~~pa~dip~~ar~ly~~n~~r~i~D~~ 291 (953)
.+++++++.+++.+++++|+||+.||-+++ |+.+..+...+.. ...+..+|... .-+...+..++.-.|+|+.
T Consensus 195 ~dl~~ll~~i~~~~~~~l~ad~~~i~L~d~---~~l~~~~~~g~~~~~~~~~~~~~~~~--gi~g~v~~~g~~v~i~d~~ 269 (691)
T 3ibj_A 195 DDVSVLLQEIITEARNLSNAEICSVFLLDQ---NELVAKVFDGGVVDDESYEIRIPADQ--GIAGHVATTGQILNIPDAY 269 (691)
T ss_dssp SCTTTHHHHHHHHHHHHHTEEEEEEEEECS---SEEEEECCSSSCCSSCCCEEEEETTS--HHHHHHHHHCSCEEESCST
T ss_pred ccHHHHHHHHHHHHHHHhCCCeEEEEEEeC---CeEEEEeecCCcccccccceeccCCC--CHHHHHHHhCCEEEecCcc
Confidence 489999999999999999999999999988 6777776655432 33455566543 3456778888888899865
Q ss_pred CCCceeeeCCCCCCccccCCccccCCChhHHHHhhhcCCeeEEEEEEEEeCCcccccccccCCCceeEEEeeecCCCC-C
Q 002210 292 APPVKVIQDKKLDQPLSLCGSTLRAPHGCHARYMENMGSIASLVMSVTINEAEDELDNDQEQGRKLWGLVVCHHTSPR-F 370 (953)
Q Consensus 292 ~~~~~l~~~~~~~~~ldl~~s~lr~~s~~h~~yl~nmgv~asl~~~i~~~~~~~~~~~~~~~~~~LWGLi~~hh~~pr-~ 370 (953)
..|-- ++........++++.|++||+.+ +|++||.|..+++.++ .
T Consensus 270 ~d~~~----------------------~~~~~~~~g~~~rS~L~vPL~~~------------~g~viGVL~l~~~~~~~~ 315 (691)
T 3ibj_A 270 AHPLF----------------------YRGVDDSTGFRTRNILCFPIKNE------------NQEVIGVAELVNKINGPW 315 (691)
T ss_dssp TSTTC----------------------------CCSCCCCCEEEEECCCS------------SSCCCEEEEEEEESSSSS
T ss_pred cCccc----------------------cchhhcccCCeeeeEEEEeEECC------------CCCEEEEEEEEECCCCCC
Confidence 54311 11222233467899999999854 2699999999998754 7
Q ss_pred CChhHHHHHHHHHHHHHHhhHHH
Q 002210 371 VPFPLRYACEFLIQVFGVQVNKE 393 (953)
Q Consensus 371 ~~~~~r~~~~~l~~~~~~~l~~~ 393 (953)
++......++.++.++|+.|...
T Consensus 316 f~~~d~~ll~~lA~~~aiAIena 338 (691)
T 3ibj_A 316 FSKFDEDLATAFSIYCGISIAHS 338 (691)
T ss_dssp CCTTTTHHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999888654
No 150
>3dba_A CONE CGMP-specific 3',5'-cyclic phosphodiesterase alpha'; 3', GAF domain, cyclic nucleotide phosphodiesterase hydrolase, lipoprotein, membrane; HET: 35G; 2.57A {Gallus gallus}
Probab=98.15 E-value=3e-05 Score=77.49 Aligned_cols=154 Identities=10% Similarity=0.133 Sum_probs=109.6
Q ss_pred HHHHHHHHHHhccCCCC-CHHHHHHHHHHHHHhhhCCCeEEEEeecCCCC-ceEEEeec--CCC--C-----CCccCCCC
Q 002210 198 YKLAAKAISRLQSLPSG-NISLLCDVLVNEVSDLTGYDRVMVYKFHEDEH-GEVVAECR--RPD--L-----EPYLGFHY 266 (953)
Q Consensus 198 ~~~~~~~~~~l~~~~~~-~~~~l~~~~v~~vr~~~g~DRVmiY~F~~d~~-G~viaE~~--~~~--~-----~~~lg~~~ 266 (953)
.+.+.++...|.+ +. +++++++.+++.+++++|+||+.||-++++.. ++.++... ..+ + .+..+.++
T Consensus 6 l~~L~eis~~l~~--~~~dl~~ll~~il~~~~~~~~a~~~~i~L~d~~~~~~~l~~~~~~~~~g~~~~~~~~~~~~~~~~ 83 (180)
T 3dba_A 6 CNILFELLTEIQD--EAGSMEKIVHKTLQRLSQLLAADRCSMFICRSRNGIPEVATRLLNVTPTSKFEDNLVNPDKETVF 83 (180)
T ss_dssp HHHHHHHHTTSCS--SSSHHHHHHHHHHHHHHHHHTEEEEEEEEEEEETTEEEEEEEEEEECTTCCHHHHBCCGGGCCEE
T ss_pred HHHHHHHHHHHHH--hhhcHHHHHHHHHHHHHHHhCcceEEEEEEeCCCCcceeeeeeeccccCccchhhccccccceee
Confidence 4445556666766 77 99999999999999999999999999998754 56665432 233 2 23345566
Q ss_pred CCCCccHHHHHHHHhCCceEeecCCCCCceeeeCCCCCCccccCCccccCCChhHHHHhhhcCCeeEEEEEEEEeCCccc
Q 002210 267 PATDIPQASRFLIMKNKVRMICDCLAPPVKVIQDKKLDQPLSLCGSTLRAPHGCHARYMENMGSIASLVMSVTINEAEDE 346 (953)
Q Consensus 267 pa~dip~~ar~ly~~n~~r~i~D~~~~~~~l~~~~~~~~~ldl~~s~lr~~s~~h~~yl~nmgv~asl~~~i~~~~~~~~ 346 (953)
|-.. --+...+..++.-+|+|+...| .-. + ........++++-|++||+.+
T Consensus 84 ~~~~--gi~g~v~~tg~~v~i~d~~~d~-------~f~--------------~-~~~~~~~~~~~S~L~vPl~~~----- 134 (180)
T 3dba_A 84 PLDI--GIAGWVAHTKKFFNIPDVKKNN-------HFS--------------D-YLDKKTGYTTVNMMAIPITQG----- 134 (180)
T ss_dssp CTTS--SHHHHHHHHTCCEEESCGGGCT-------TCC--------------C-HHHHHHCCCCCCEEEEEEEET-----
T ss_pred eCCC--CHHHHHHHhCCEEEecCCCCCc-------ccC--------------h-hhccccCccccEEEEEEeccC-----
Confidence 6542 2356677788888888854433 110 1 111234567899999999977
Q ss_pred ccccccCCCceeEEEeeecCCCC-CCChhHHHHHHHHHHHHHHhh
Q 002210 347 LDNDQEQGRKLWGLVVCHHTSPR-FVPFPLRYACEFLIQVFGVQV 390 (953)
Q Consensus 347 ~~~~~~~~~~LWGLi~~hh~~pr-~~~~~~r~~~~~l~~~~~~~l 390 (953)
|++.|.|...+..+. ..+......++.|+.++++.|
T Consensus 135 --------~~viGVL~l~n~~~~~~Ft~~d~~lL~~lA~~aa~~i 171 (180)
T 3dba_A 135 --------KEVLAVVMALNKLNASEFSKEDEEVFKKYLNFISLVL 171 (180)
T ss_dssp --------TEEEEEEEEEEESSSSSCCHHHHHHHHHHHHHHHHHT
T ss_pred --------CEEEEEEEEEeCCCCCCCCHHHHHHHHHHHHHHHHHH
Confidence 899999999888754 778888888888888877765
No 151
>3gdi_A Period circadian protein homolog 2; tandem PAS domains, biological rhythms, cytoplasm, nucleus, phosphoprotein, transcription; 2.40A {Mus musculus}
Probab=98.11 E-value=1.6e-05 Score=86.54 Aligned_cols=104 Identities=8% Similarity=0.011 Sum_probs=85.9
Q ss_pred ccEEEEcCCCcEEecCHHHHHHhCCCcchhcCCCccccccCCcHHHHHHHHHHHhc-ccceEE-EEEEEcccCCCCCEEE
Q 002210 622 VPILAVDASGNVNGWNSKAAELTGLTVDQAIGTALVDLVAGDSVDVVKNMLSSAFL-EERNVE-IKLRAFGPRETSGPVI 699 (953)
Q Consensus 622 ~~I~~~D~dg~i~~~N~a~~~l~G~~~~eliG~~~~dl~~~~~~~~~~~~l~~~l~-~~~~~e-~~~~~~~~~~dG~~~~ 699 (953)
..+...+.+|+++++|+++..++||.++|++|+++.+++|++|.+.+.+.+..++. .+.... ..++. +++||..+|
T Consensus 166 ~Fitrh~~dG~~~yvd~~~~~lLGY~peELig~s~~~~iHpdD~~~~~~~~~~~l~~~g~~~~~~~yR~--~~kdG~~vw 243 (309)
T 3gdi_A 166 IFTTTHTPNCLFQAVDERAVPLLGYLPQDLIETPVLVQLHPSDRPLMLAIHKKILQAGGQPFDYSPIRF--RTRNGEYIT 243 (309)
T ss_dssp EEEEEECTTCBEEEECTTHHHHHSCCHHHHTTSBHHHHBCTTSHHHHHHHHHHHHHTTTCCEEEEEEEE--ECTTSCEEE
T ss_pred eEEEEecCCCeEEEECcccccccCcCHHHHcCCCHHHhCCHHHHHHHHHHHHHHHhcCCceeeceEEEE--EccCCCEEE
Confidence 45777899999999999999999999999999999999999999988888888884 344443 34444 577999999
Q ss_pred EEEEEEEeecC-CCCEEEEEEEEEecchh
Q 002210 700 LVVNACCTQDT-KENVIGVCFVGQDITGQ 727 (953)
Q Consensus 700 v~v~~~pi~d~-~g~v~gvv~v~~DITer 727 (953)
+.....++.+. .+++..++++-+-++..
T Consensus 244 vet~~~~~~np~s~~~e~ii~~h~v~~gp 272 (309)
T 3gdi_A 244 LDTSWSSFINPWSRKISFIIGRHKVRVGP 272 (309)
T ss_dssp EEEEEEEEECTTTCCEEEEEEEEEEEECC
T ss_pred EEEEEEEEECCCCCcccEEEEEEEEccCC
Confidence 99999998875 57777888877766653
No 152
>4dj2_A Period circadian protein homolog 1; PAS domains, circadian clock protein, protein binding; 2.75A {Mus musculus}
Probab=98.05 E-value=1.6e-05 Score=86.96 Aligned_cols=105 Identities=10% Similarity=0.010 Sum_probs=86.3
Q ss_pred CccEEEEcCCCcEEecCHHHHHHhCCCcchhcCCCccccccCCcHHHHHHHHHHHhc-ccceE-EEEEEEcccCCCCCEE
Q 002210 621 AVPILAVDASGNVNGWNSKAAELTGLTVDQAIGTALVDLVAGDSVDVVKNMLSSAFL-EERNV-EIKLRAFGPRETSGPV 698 (953)
Q Consensus 621 ~~~I~~~D~dg~i~~~N~a~~~l~G~~~~eliG~~~~dl~~~~~~~~~~~~l~~~l~-~~~~~-e~~~~~~~~~~dG~~~ 698 (953)
...+...+.+|+++++|+++..++||.++|++|+++.+++|++|.+.+.+.+..++. .+... ...++. +++||..+
T Consensus 176 ~~Fitrh~~dG~~~yvd~~~~~lLGY~peELig~s~~~~vHPdD~~~~~~~~~~~l~~~g~~~~~~~yR~--~~kdG~~v 253 (320)
T 4dj2_A 176 RIFTTRHTPSCLFQDVDERAAPLLGYLPQDLLGAPVLLFLHPEDRPLMLAIHKKILQLAGQPFDHSPIRF--CARNGEYV 253 (320)
T ss_dssp CEEEEEECTTCBEEEECTTHHHHHSCCHHHHTTSBGGGGBCGGGHHHHHHHHHHHTTSSSCCEECCCEEE--ECSSSCEE
T ss_pred ceEEEEecCCceEEEcCcceeccCCcChHHHcCCcHHHhCCHHHHHHHHHHHHHHHhcCCCcccceEEEE--EccCCCEE
Confidence 456778899999999999999999999999999999999999999988888888885 34433 234444 56799999
Q ss_pred EEEEEEEEeecC-CCCEEEEEEEEEecchh
Q 002210 699 ILVVNACCTQDT-KENVIGVCFVGQDITGQ 727 (953)
Q Consensus 699 ~v~v~~~pi~d~-~g~v~gvv~v~~DITer 727 (953)
|+.....++.+. .+++..+++.-+-++..
T Consensus 254 wvet~~~~~~np~s~~~e~II~~h~v~~gp 283 (320)
T 4dj2_A 254 TMDTSWAGFVHPWSRKVAFVLGRHKVRTAP 283 (320)
T ss_dssp EEECEEEEEECTTTCSEEEEEEEEEESSCC
T ss_pred EEEEEEEEEECCCCCCccEEEEEEEEccCC
Confidence 999999998875 57788888877666653
No 153
>3mmh_A FRMSR, methionine-R-sulfoxide reductase; oxidoreductase; HET: SME MRD; 1.25A {Neisseria meningitidis} SCOP: d.110.2.0
Probab=98.01 E-value=0.00028 Score=69.46 Aligned_cols=145 Identities=12% Similarity=0.052 Sum_probs=102.0
Q ss_pred HHHHHHHHHHh-ccCCCCCHHHHHHHHHHHHHhhhCCCeEEEEeecCCCCceEEEeecCCCCCCccCCCCCCCCccHHHH
Q 002210 198 YKLAAKAISRL-QSLPSGNISLLCDVLVNEVSDLTGYDRVMVYKFHEDEHGEVVAECRRPDLEPYLGFHYPATDIPQASR 276 (953)
Q Consensus 198 ~~~~~~~~~~l-~~~~~~~~~~l~~~~v~~vr~~~g~DRVmiY~F~~d~~G~viaE~~~~~~~~~lg~~~pa~dip~~ar 276 (953)
|..+..-++++ .. ..++.+.++.++..+.+.++++|+.+|-+++++.--++.-... .. -..+||-.. --+-
T Consensus 15 ~~~ll~~i~~ll~~--~~dl~~~L~~v~~~l~~~l~~~~~~iyL~d~~~~~L~l~a~~G--~~--~~~~i~~ge--Gi~G 86 (167)
T 3mmh_A 15 YREVLPQIESVVAD--ETDWVANLANTAAVLKEAFGWFWVGFYLVDTRSDELVLAPFQG--PL--ACTRIPFGR--GVCG 86 (167)
T ss_dssp HHHHHHHHHHHHHT--CCCHHHHHHHHHHHHHHHHCCSEEEEEEEETTTTEEEEEEEES--SC--CCSEEETTS--HHHH
T ss_pred HHHHHHHHHHHHcc--CCCHHHHHHHHHHHHHHHcCCcEEEEEEEECCCCEEEEEEecc--cc--cceEeccCC--ChHH
Confidence 44333444443 44 5699999999999999999999999999998865444443221 11 122443322 2345
Q ss_pred HHHHhCCceEeecCCCCCceeeeCCCCCCccccCCccccCCChhHHHHhhhcCCeeEEEEEEEEeCCcccccccccCCCc
Q 002210 277 FLIMKNKVRMICDCLAPPVKVIQDKKLDQPLSLCGSTLRAPHGCHARYMENMGSIASLVMSVTINEAEDELDNDQEQGRK 356 (953)
Q Consensus 277 ~ly~~n~~r~i~D~~~~~~~l~~~~~~~~~ldl~~s~lr~~s~~h~~yl~nmgv~asl~~~i~~~~~~~~~~~~~~~~~~ 356 (953)
.-+..++.-+|+|++..|--+ +| ..+++|-+++||+.+ |+
T Consensus 87 ~v~~~g~~~~v~Dv~~~p~~~---------------------~~------~~~~~S~i~vPi~~~-------------g~ 126 (167)
T 3mmh_A 87 QAWAKGGTVVVGDVDAHPDHI---------------------AC------SSLSRSEIVVPLFSD-------------GR 126 (167)
T ss_dssp HHHHHTSCEEESCGGGSTTCC---------------------CS------STTCCEEEEEEEEET-------------TE
T ss_pred HHHhCCcEEEECCcccCcchh---------------------hc------CccCCeEEEEEeccC-------------CE
Confidence 566778888999976554211 11 136889999999987 89
Q ss_pred eeEEEeeecCCCCCCChhHHHHHHHHHHHHHHhh
Q 002210 357 LWGLVVCHHTSPRFVPFPLRYACEFLIQVFGVQV 390 (953)
Q Consensus 357 LWGLi~~hh~~pr~~~~~~r~~~~~l~~~~~~~l 390 (953)
++|.|.+.+..|+.........++.++..++..+
T Consensus 127 viGVL~i~s~~~~~F~~~d~~~L~~lA~~la~~i 160 (167)
T 3mmh_A 127 CIGVLDADSEHLAQFDETDALYLGELAKILEKRF 160 (167)
T ss_dssp EEEEEEEEESSTTCCCHHHHHHHHHHHHHHHHHH
T ss_pred EEEEEEEecCCCCCCCHHHHHHHHHHHHHHHHHH
Confidence 9999999998898888888888888887776554
No 154
>3bjc_A CGMP-specific 3',5'-cyclic phosphodiesterase; PDE5, erectIle dysfunction, inhibitor design, allosteric enzyme, alternative splicing, CGMP binding; HET: WAN; 2.00A {Homo sapiens} SCOP: a.211.1.2 PDB: 3mf0_A 3lfv_A 2xss_A 2k31_A*
Probab=98.00 E-value=7.8e-07 Score=111.37 Aligned_cols=155 Identities=10% Similarity=0.125 Sum_probs=0.0
Q ss_pred HHHHHHHHHhccCCCCCHHHHHHHHHHHHHhhhCCCeEEEEeecCCCCce--EEEe--ecCCCC--C--CccCCCCCCCC
Q 002210 199 KLAAKAISRLQSLPSGNISLLCDVLVNEVSDLTGYDRVMVYKFHEDEHGE--VVAE--CRRPDL--E--PYLGFHYPATD 270 (953)
Q Consensus 199 ~~~~~~~~~l~~~~~~~~~~l~~~~v~~vr~~~g~DRVmiY~F~~d~~G~--viaE--~~~~~~--~--~~lg~~~pa~d 270 (953)
..+.++...|.+ +.+++++++.+++.+++++|+||+.||.++++..|. .++. ....+. + +..+..||-..
T Consensus 153 ~~L~eis~~L~~--~ldl~~ll~~il~~l~~~l~ad~~~I~L~d~~~~~~~~lv~~~f~~~~G~~~~~~~~~~~~~p~~~ 230 (878)
T 3bjc_A 153 SRLLELVKDISS--HLDVTALCHKIFLHIHGLISADRYSLFLVCEDSSNDKFLISRLFDVAEGSTLEEVSNNCIRLEWNK 230 (878)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHHHHhh--cCCHHHHHHHHHHHHHHHhCCCeEEEEEEeCCCCCceeEEeeecccccCccccccCCcceeeeCCc
Confidence 344556666776 679999999999999999999999999999987643 3321 111121 1 23445555431
Q ss_pred ccHHHHHHHHhCCceEeecCCCCCceeeeCCCCCCccccCCccccCCChhHHHHhhhcCCeeEEEEEEEE-eCCcccccc
Q 002210 271 IPQASRFLIMKNKVRMICDCLAPPVKVIQDKKLDQPLSLCGSTLRAPHGCHARYMENMGSIASLVMSVTI-NEAEDELDN 349 (953)
Q Consensus 271 ip~~ar~ly~~n~~r~i~D~~~~~~~l~~~~~~~~~ldl~~s~lr~~s~~h~~yl~nmgv~asl~~~i~~-~~~~~~~~~ 349 (953)
--+...+..+..-.|+|+...|- . ..........++++.|++||+. +
T Consensus 231 --gi~g~v~~~g~pv~I~D~~~dp~-------f---------------~~~~~~~~~~~~~S~L~vPL~~~~-------- 278 (878)
T 3bjc_A 231 --GIVGHVAALGEPLNIKDAYEDPR-------F---------------NAEVDQITGYKTQSILCMPIKNHR-------- 278 (878)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --cHHHHHHhcCceEEeCCcccCcc-------c---------------ccccccccCCccceEEEEeeEcCC--------
Confidence 12334455566666666443321 0 1111223345689999999997 5
Q ss_pred cccCCCceeEEEeeecCCCC---CCChhHHHHHHHHHHHHHHhhHH
Q 002210 350 DQEQGRKLWGLVVCHHTSPR---FVPFPLRYACEFLIQVFGVQVNK 392 (953)
Q Consensus 350 ~~~~~~~LWGLi~~hh~~pr---~~~~~~r~~~~~l~~~~~~~l~~ 392 (953)
|++||.|.++++.+. .++......++.++..++..|..
T Consensus 279 -----g~viGvL~l~~~~~~~~~~ft~~D~~lL~~lA~~~a~AL~n 319 (878)
T 3bjc_A 279 -----EEVVGVAQAINKKSGNGGTFTEKDEKDFAAYLAFCGIVLHN 319 (878)
T ss_dssp ----------------------------------------------
T ss_pred -----CCEEEEEEEEecCCCCCCCCCHHHHHHHHHHHHHHHHHHHH
Confidence 899999999998754 88888899999999988888764
No 155
>4ew8_A Sensor protein DIVL; signal transduction, two-component regulatory system, hiska GHKL domain, structural genomics; 2.50A {Caulobacter crescentus}
Probab=97.95 E-value=2e-05 Score=83.79 Aligned_cols=71 Identities=21% Similarity=0.271 Sum_probs=62.9
Q ss_pred HHHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhcC-CCCCHHHHHHHHHHHHHHHHHHhHhhh-hcccchhccc
Q 002210 879 EQAAANSLNKLEYIRREIRKPLNGIAFMQNLMGT-SDLSEEQKQLLKTSVLCQEQLTNIVDD-TDIESIEEWY 949 (953)
Q Consensus 879 e~~~~~k~~fla~isHELrnPL~~I~g~~~LL~~-~~l~e~~~~~l~~i~~~~~~L~~lI~D-LdlsrIe~G~ 949 (953)
++..+.+.+|++.++|||||||++|.+++++|.. ...+++.+++++.+..+.++|..++++ +++++++.|.
T Consensus 34 ~~~~~~~~~~~~~l~Helr~pL~~i~~~~~~l~~~~~~~~~~~~~l~~i~~~~~~l~~~i~~l~~~~~~~~~~ 106 (268)
T 4ew8_A 34 AEAERLKRDFVGNVSYELRTPLTTIIGYSELLERADGISERGRNHVAAVRAAATQLARSIDDVLDMAQIDAGE 106 (268)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCSSCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCC
Confidence 3345567789999999999999999999999987 457888999999999999999999999 7999998875
No 156
>1vhm_A Protein YEBR; structural genomics, unknown function; HET: MES; 2.10A {Escherichia coli} SCOP: d.110.2.1
Probab=97.62 E-value=0.0022 Score=64.55 Aligned_cols=142 Identities=10% Similarity=0.048 Sum_probs=99.3
Q ss_pred HHHHHHHHhccCCCCCHHHHHHHHHHHHHhhh-CCCeEEEEeecCCCCceEEEeecCCCCCCccCCCCCCCCccHHHHHH
Q 002210 200 LAAKAISRLQSLPSGNISLLCDVLVNEVSDLT-GYDRVMVYKFHEDEHGEVVAECRRPDLEPYLGFHYPATDIPQASRFL 278 (953)
Q Consensus 200 ~~~~~~~~l~~~~~~~~~~l~~~~v~~vr~~~-g~DRVmiY~F~~d~~G~viaE~~~~~~~~~lg~~~pa~dip~~ar~l 278 (953)
++.++-.-+.. ..++.+.++.+++.+.+.+ +++++.+|-+++ |+.+..+.. +.. -..+||-..= -+-.-
T Consensus 30 ll~~l~~ll~~--~~dl~~~L~~v~~ll~~~l~~~~~~~iyL~d~---~~L~l~~~~-G~~--~~~~i~~GeG--i~G~a 99 (195)
T 1vhm_A 30 LNRDFNALMAG--ETSFLATLANTSALLYERLTDINWAGFYLLED---DTLVLGPFQ-GKI--ACVRIPVGRG--VCGTA 99 (195)
T ss_dssp HHHHHHHHHTT--CCCHHHHHHHHHHHHHHHSSSCSEEEEEEEET---TEEEEEEEE-ESC--CCSEEETTSH--HHHHH
T ss_pred HHHHHHHHHhc--CCcHHHHHHHHHHHHHHhCCCCCEEEEEEEEC---CEEEEEEec-Ccc--cceEecCCCC--hHHHH
Confidence 33333344555 5699999999999999999 999999999986 343332211 111 1344443322 34456
Q ss_pred HHhCCceEeecCCCCCceeeeCCCCCCccccCCccccCCChhHHHHhhhcCCeeEEEEEEEEeCCcccccccccCCCcee
Q 002210 279 IMKNKVRMICDCLAPPVKVIQDKKLDQPLSLCGSTLRAPHGCHARYMENMGSIASLVMSVTINEAEDELDNDQEQGRKLW 358 (953)
Q Consensus 279 y~~n~~r~i~D~~~~~~~l~~~~~~~~~ldl~~s~lr~~s~~h~~yl~nmgv~asl~~~i~~~~~~~~~~~~~~~~~~LW 358 (953)
+..++.-+|+|+...|--+ .| ..+++|.|++||+.+ |++.
T Consensus 100 a~tg~~i~V~Dv~~~p~~~---------------------~~------~~~~~S~l~VPI~~~-------------g~vi 139 (195)
T 1vhm_A 100 VARNQVQRIEDVHVFDGHI---------------------AC------DAASNSEIVLPLVVK-------------NQII 139 (195)
T ss_dssp HHHTSCEEESCTTTCTTCC---------------------CS------CCCCSEEEEEEEEET-------------TEEE
T ss_pred HhcCCEEEECCcccCcchh---------------------hc------CCCccEEEEEeEeEC-------------CEEE
Confidence 6778888999977654211 00 115799999999977 8999
Q ss_pred EEEeeecCCCCCCChhHHHHHHHHHHHHHHhhH
Q 002210 359 GLVVCHHTSPRFVPFPLRYACEFLIQVFGVQVN 391 (953)
Q Consensus 359 GLi~~hh~~pr~~~~~~r~~~~~l~~~~~~~l~ 391 (953)
|.|......|+.........++.++..++..|+
T Consensus 140 GVL~i~s~~~~~F~e~d~~~L~~lA~~ia~ale 172 (195)
T 1vhm_A 140 GVLDIDSTVFGRFTDEDEQGLRQLVAQLEKVLA 172 (195)
T ss_dssp EEEEEEESSTTCCCHHHHHHHHHHHHHHHHHHH
T ss_pred EEEEecCCCCCCCCHHHHHHHHHHHHHHHHHHH
Confidence 999999988888888888888888887776653
No 157
>1f5m_A GAF; CGMP binding, signaling protein; 1.90A {Saccharomyces cerevisiae} SCOP: d.110.2.1 PDB: 3ko6_A*
Probab=97.43 E-value=0.0027 Score=63.20 Aligned_cols=132 Identities=8% Similarity=-0.006 Sum_probs=94.2
Q ss_pred CCCHHHHHHHHHHHHHhhh-----CCCeEEEEeecCCCCceEEEeecCCCCCCccCCCCCCCCccHHHHHHHHhCCceEe
Q 002210 213 SGNISLLCDVLVNEVSDLT-----GYDRVMVYKFHEDEHGEVVAECRRPDLEPYLGFHYPATDIPQASRFLIMKNKVRMI 287 (953)
Q Consensus 213 ~~~~~~l~~~~v~~vr~~~-----g~DRVmiY~F~~d~~G~viaE~~~~~~~~~lg~~~pa~dip~~ar~ly~~n~~r~i 287 (953)
..++.++++.+++.+.+.+ +++++.+|-++++..++.+.-....... ..+||-..= -+-.-...++.-+|
T Consensus 39 ~~dl~~~L~~v~~~l~~~l~~~~~~~~~~~~yl~d~~~~~~L~l~~~~g~~~---~~~i~~g~G--i~G~aa~~g~~v~v 113 (180)
T 1f5m_A 39 QVNWVCNLSNASSLIWHAYKSLAVDINWAGFYVTQASEENTLILGPFQGKVA---CQMIQFGKG--VCGTAASTKETQIV 113 (180)
T ss_dssp CCBHHHHHHHHHHHHHHHHHHTTCCEEEEEEEEECSSSSCEEEEEEEEESCC---CSEEETTSH--HHHHHHHHTSCEEE
T ss_pred CccHHHHHHHHHHHHHHHHhhccCCccEEEEEEEecCCCCeEEEeecCCCcc---ceeecCCCc--chhhhhhcCCEEEe
Confidence 4689999999999999998 9999999999987645554422111111 244444332 23345666777788
Q ss_pred ecCCCCCceeeeCCCCCCccccCCccccCCChhHHHHhhhcCCeeEEEEEEEE-eCCcccccccccCCCceeEEEeeecC
Q 002210 288 CDCLAPPVKVIQDKKLDQPLSLCGSTLRAPHGCHARYMENMGSIASLVMSVTI-NEAEDELDNDQEQGRKLWGLVVCHHT 366 (953)
Q Consensus 288 ~D~~~~~~~l~~~~~~~~~ldl~~s~lr~~s~~h~~yl~nmgv~asl~~~i~~-~~~~~~~~~~~~~~~~LWGLi~~hh~ 366 (953)
+|+...|--+ .| ..+++|.+++||+. + |++.|.|.+++.
T Consensus 114 ~Dv~~dp~~~---------------------~~------~~~~~S~l~vPi~~~~-------------g~viGVL~l~s~ 153 (180)
T 1f5m_A 114 PDVNKYPGHI---------------------AC------DGETKSEIVVPIISND-------------GKTLGVIDIDCL 153 (180)
T ss_dssp SCGGGSTTCC---------------------CS------STTCCEEEEEEEECTT-------------SCEEEEEEEEES
T ss_pred CCcccCcccc---------------------cc------CcccceEEEEEEEcCC-------------CeEEEEEEeccC
Confidence 9966544211 11 13789999999997 5 899999999998
Q ss_pred CCCCCChhHHHHHHHHHHHHHHh
Q 002210 367 SPRFVPFPLRYACEFLIQVFGVQ 389 (953)
Q Consensus 367 ~pr~~~~~~r~~~~~l~~~~~~~ 389 (953)
.|+.........++.++..++..
T Consensus 154 ~~~~F~~~d~~~L~~la~~~a~~ 176 (180)
T 1f5m_A 154 DYEGFDHVDKEFLEKLAKLINKS 176 (180)
T ss_dssp STTCCCHHHHHHHHHHHHHHHHH
T ss_pred CCCCcCHHHHHHHHHHHHHHHHh
Confidence 88888888888888888877654
No 158
>3ksh_A Putative uncharacterized protein; FRMSR, free-Met-R-SO, oxidoreductase; 1.50A {Staphylococcus aureus} SCOP: d.110.2.0 PDB: 3ksf_A 3ksi_A 3ksg_A*
Probab=97.36 E-value=0.0082 Score=58.24 Aligned_cols=130 Identities=11% Similarity=0.152 Sum_probs=93.1
Q ss_pred CCCHHHHHHHHHHHHHhhhC-CCeEEEEeecCCCCceEEEeecCCCCCCccCCCCCCCCccHHHHHHHHhCCceEeecCC
Q 002210 213 SGNISLLCDVLVNEVSDLTG-YDRVMVYKFHEDEHGEVVAECRRPDLEPYLGFHYPATDIPQASRFLIMKNKVRMICDCL 291 (953)
Q Consensus 213 ~~~~~~l~~~~v~~vr~~~g-~DRVmiY~F~~d~~G~viaE~~~~~~~~~lg~~~pa~dip~~ar~ly~~n~~r~i~D~~ 291 (953)
..|+.+.++.++..+++.++ +|++-+|-+++ ++.+-.+.... .. -.+||-.. --.-.-+..++.-+|+|+.
T Consensus 29 ~~dl~~~L~~v~~ll~~~l~~~~~~gfYL~~~---~~L~l~~~~G~-~a--~~ri~~Ge--Gv~G~aa~~~~~i~V~Dv~ 100 (160)
T 3ksh_A 29 EHHMIAILSNMSALLNDNLDQINWVGFYLLEQ---NELILGPFQGH-PA--CVHIPIGK--GVCGTAVSERRTQVVADVH 100 (160)
T ss_dssp CCCHHHHHHHHHHHHHHHCSSCSEEEEEEEET---TEEEEEEEEES-CC--CSEEETTS--HHHHHHHHHTSCEEESCGG
T ss_pred CCCHHHHHHHHHHHHHHHcccCCEEEEEEEEC---CEEEEEeccCC-cc--cEEeeCCC--CHHHHHHhhCCEEEECCcc
Confidence 46999999999999999997 99999999974 35443322111 11 12333221 2345667788999999976
Q ss_pred CCCceeeeCCCCCCccccCCccccCCChhHHHHhhhcCCeeEEEEEEEEeCCcccccccccCCCceeEEEeeecCCCCCC
Q 002210 292 APPVKVIQDKKLDQPLSLCGSTLRAPHGCHARYMENMGSIASLVMSVTINEAEDELDNDQEQGRKLWGLVVCHHTSPRFV 371 (953)
Q Consensus 292 ~~~~~l~~~~~~~~~ldl~~s~lr~~s~~h~~yl~nmgv~asl~~~i~~~~~~~~~~~~~~~~~~LWGLi~~hh~~pr~~ 371 (953)
..|--+ .| ..+++|-+++||+.+ |+++|.|...+..++..
T Consensus 101 ~~p~~i---------------------~~------~~~~~Sei~VPI~~~-------------g~viGVL~i~s~~~~~F 140 (160)
T 3ksh_A 101 QFKGHI---------------------AC------DANSKSEIVVPIFKD-------------DKIIGVLDIDAPITDRF 140 (160)
T ss_dssp GSTTCC---------------------GG------GTTCSEEEEEEEEET-------------TEEEEEEEEEESSSSCC
T ss_pred cCcccc---------------------cc------CcccCceEEEEEEEC-------------CEEEEEEEEecCCCCCC
Confidence 554211 11 135789999999987 99999999999888888
Q ss_pred ChhHHHHHHHHHHHHHHhh
Q 002210 372 PFPLRYACEFLIQVFGVQV 390 (953)
Q Consensus 372 ~~~~r~~~~~l~~~~~~~l 390 (953)
.......++.++..++..|
T Consensus 141 ~e~D~~~L~~lA~~la~~~ 159 (160)
T 3ksh_A 141 DDNDKEHLEAIVKIIEKQL 159 (160)
T ss_dssp CHHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHh
Confidence 8888888888887776443
No 159
>3d36_A Sporulation kinase B; GHKL ATPase, four helix bundle, class I two-component histidine kinase, phosphoprotein; HET: ADP; 2.03A {Geobacillus stearothermophilus}
Probab=97.34 E-value=0.0001 Score=76.91 Aligned_cols=66 Identities=17% Similarity=0.208 Sum_probs=55.1
Q ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHhhcCCCC-CHHHHHHHHHHHHHHHHHHhHhhh-hcccchhccc
Q 002210 884 NSLNKLEYIRREIRKPLNGIAFMQNLMGTSDL-SEEQKQLLKTSVLCQEQLTNIVDD-TDIESIEEWY 949 (953)
Q Consensus 884 ~k~~fla~isHELrnPL~~I~g~~~LL~~~~l-~e~~~~~l~~i~~~~~~L~~lI~D-LdlsrIe~G~ 949 (953)
.+.++++.++|||||||++|.+++++|..... +++.+++++.+....++|..++++ +++++.+.+.
T Consensus 13 ~~~~~~~~l~Helr~pL~~i~~~~~~l~~~~~~~~~~~~~~~~i~~~~~~l~~~i~~l~~~~~~~~~~ 80 (244)
T 3d36_A 13 AVTHLAASISHEIRNPLTAARGFIQLIEEQPLAADKRRQYARIAIEELDRAEAIITDYLTFAKPAPET 80 (244)
T ss_dssp ----CCCCHHHHHHHHHHHHHHHHHHGGGCTTCHHHHHHHHHHHHHHHHHHHHHHHHHHSSCCSSCCC
T ss_pred HHHHHHHHhhHHhccHHHHHHHHHHHHHhcccChhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCC
Confidence 35678899999999999999999999987554 456788999999999999999999 7999987653
No 160
>3zcc_A HAMP, osmolarity sensor protein ENVZ; signaling protein, signal transduction, membrane protein, signalling, chimera; 1.25A {Archaeoglobus fulgidus} PDB: 3zrw_A 3zrv_A 3zrx_A 3zrw_B 2lfr_A 2lfs_A 1joy_A 2l7h_A 2l7i_A 2y20_A 2y21_A 2y0q_A 2y0t_A
Probab=97.32 E-value=0.00052 Score=61.99 Aligned_cols=59 Identities=19% Similarity=0.284 Sum_probs=48.7
Q ss_pred HHHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHHHHHHhHhhh-hcc
Q 002210 879 EQAAANSLNKLEYIRREIRKPLNGIAFMQNLMGTSDLSEEQKQLLKTSVLCQEQLTNIVDD-TDI 942 (953)
Q Consensus 879 e~~~~~k~~fla~isHELrnPL~~I~g~~~LL~~~~l~e~~~~~l~~i~~~~~~L~~lI~D-Ldl 942 (953)
++....+.+|++.++||+||||+.|.++++++.. ...+.++.+..++.+|..++++ |++
T Consensus 54 ~~~~~~~~~~~~~~shel~tpl~~i~~~~e~l~~-----~~~~~~~~i~~~~~~l~~~i~~ll~~ 113 (114)
T 3zcc_A 54 KQLADDGTLLMAGVSHDLRTPLTRIRLATEMMSE-----QDGYLAESINKDIEECNAIIEQFIDY 113 (114)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSCG-----GGHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhHHHcChHHHHHHHHHHHHH-----hhhHHHHHHHHHHHHHHHHHHHHHhh
Confidence 3344556788999999999999999999999963 3355568999999999999999 776
No 161
>1gkz_A [3-methyl-2-oxobutanoate dehydrogenase [lipoamide]] kinase; transferase, mitochondrial protein kinase, potassium; HET: ADP; 2.2A {Rattus norvegicus} SCOP: a.29.5.1 d.122.1.4 PDB: 1gjv_A 1gkx_A*
Probab=97.27 E-value=0.00034 Score=78.95 Aligned_cols=68 Identities=4% Similarity=0.001 Sum_probs=60.0
Q ss_pred HHHHHHHHHHHHHhhhHHHHHH-HHHHhhcCCCCCHHHHHHHHHHHHHHHHHHhHhhh-hcccchhcccc
Q 002210 883 ANSLNKLEYIRREIRKPLNGIA-FMQNLMGTSDLSEEQKQLLKTSVLCQEQLTNIVDD-TDIESIEEWYD 950 (953)
Q Consensus 883 ~~k~~fla~isHELrnPL~~I~-g~~~LL~~~~l~e~~~~~l~~i~~~~~~L~~lI~D-LdlsrIe~G~~ 950 (953)
..+..+++.++||+||||+.|. |+.+++.....+++.+++++.+.++..+|..|+++ |++++++.|+.
T Consensus 119 ~~~~~~l~~i~helrtpL~~i~~g~~~l~~~~~~~~~~~~~l~~i~~~~~~l~~li~~ll~l~~~~~~~~ 188 (388)
T 1gkz_A 119 AQYCQLVRQLLDDHKDVVTLLAEGLRESRKHIEDEKLVRYFLDKTLTSRLGIRMLATHHLALHEDKPDFV 188 (388)
T ss_dssp HHHHHHHHHHHHHTTTHHHHHHHHHHHSSSSCCSTTHHHHHHHHHHHHHHHHHHHHHHHHHTTSCCTTEE
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHHhhccCcHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCcc
Confidence 3466899999999999999999 88888776666788999999999999999999999 89999998753
No 162
>3rfb_A Putative uncharacterized protein; FRMSR, GAF, oxidoreductase, SME; HET: SME; 2.30A {Streptococcus pneumoniae}
Probab=97.26 E-value=0.011 Score=57.93 Aligned_cols=144 Identities=11% Similarity=-0.004 Sum_probs=98.6
Q ss_pred HHHHHHHHHHhccCCCCCHHHHHHHHHHHHHhhhC-CCeEEEEeecCCCCceEEEeecCCCCCCccCCCCCCCCccHHHH
Q 002210 198 YKLAAKAISRLQSLPSGNISLLCDVLVNEVSDLTG-YDRVMVYKFHEDEHGEVVAECRRPDLEPYLGFHYPATDIPQASR 276 (953)
Q Consensus 198 ~~~~~~~~~~l~~~~~~~~~~l~~~~v~~vr~~~g-~DRVmiY~F~~d~~G~viaE~~~~~~~~~lg~~~pa~dip~~ar 276 (953)
|..+..-+.+|-+- ..|+.+.++.++..+++.++ +|++-+|-+++ ++.+-.+... ... ..+||-.. --.-
T Consensus 16 ~~~ll~~l~~ll~~-~~dl~~~L~nv~~lL~~~l~~~~~~gfYL~~~---~~L~l~a~~G-~~a--~~ri~~Ge--Gv~G 86 (171)
T 3rfb_A 16 YQMLNEELSFLLEG-ETNVLANLSNASALIKSRFPNTVFAGFYLFDG---KELVLGPFQG-GVS--CIRIALGK--GVCG 86 (171)
T ss_dssp HHHHHHHHHHHHTT-CCBHHHHHHHHHHHHHHHCTTEEEEEEEEECS---SEEEEEEEES-SSC--CCEEETTS--HHHH
T ss_pred HHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHHHccCCCEEEEEEEEC---CEEEEEeccC-Ccc--ceEeeCCc--CHHH
Confidence 44343344443321 56999999999999999997 99999999864 4544332111 111 12222211 2455
Q ss_pred HHHHhCCceEeecCCCCCceeeeCCCCCCccccCCccccCCChhHHHHhhhcCCeeEEEEEEEEeCCcccccccccCCCc
Q 002210 277 FLIMKNKVRMICDCLAPPVKVIQDKKLDQPLSLCGSTLRAPHGCHARYMENMGSIASLVMSVTINEAEDELDNDQEQGRK 356 (953)
Q Consensus 277 ~ly~~n~~r~i~D~~~~~~~l~~~~~~~~~ldl~~s~lr~~s~~h~~yl~nmgv~asl~~~i~~~~~~~~~~~~~~~~~~ 356 (953)
.-+..++.-+|+|++..|--+. | .-++++-+++||+.+ |+
T Consensus 87 ~va~tg~~i~V~Dv~~~p~~i~---------------------~------~~~~~Sei~VPI~~~-------------g~ 126 (171)
T 3rfb_A 87 EAAHFQETVIVGDVTTYLNYIS---------------------C------DSLAKSEIVVPMMKN-------------GQ 126 (171)
T ss_dssp HHHHTTSCEEESCTTSCSSCCC---------------------S------CTTCCEEEEEEEEET-------------TE
T ss_pred HHHhhCCEEEECCcccCccccc---------------------c------CcccCceEEEEEEEC-------------CE
Confidence 6678899999999877663221 1 124689999999987 99
Q ss_pred eeEEEeeecCCCCCCChhHHHHHHHHHHHHHHhh
Q 002210 357 LWGLVVCHHTSPRFVPFPLRYACEFLIQVFGVQV 390 (953)
Q Consensus 357 LWGLi~~hh~~pr~~~~~~r~~~~~l~~~~~~~l 390 (953)
++|.|...+..++.........++.++..++..+
T Consensus 127 viGVL~i~s~~~~~F~e~D~~~L~~lA~~la~~~ 160 (171)
T 3rfb_A 127 LLGVLDLDSSEIEDYDAMDRDYLEQFVAILLEKT 160 (171)
T ss_dssp EEEEEEEEESSTTCCCHHHHHHHHHHHHHHHHSC
T ss_pred EEEEEEEecCCCCCCCHHHHHHHHHHHHHHHHHh
Confidence 9999999998888888888888888877766543
No 163
>3jz3_A Sensor protein QSEC; helix-turn-helix, kinase domain, ATP-binding, cell inner MEM cell membrane, kinase, membrane, nucleotide-binding; 2.50A {Escherichia coli}
Probab=97.21 E-value=1.8e-05 Score=81.31 Aligned_cols=66 Identities=17% Similarity=0.207 Sum_probs=24.8
Q ss_pred HHHHHHHHHHHhhhHHHHHHHHHHhhcCCCC-CHHHHHHHHHHHHHHHHHHhHhhh-hcccchhcccc
Q 002210 885 SLNKLEYIRREIRKPLNGIAFMQNLMGTSDL-SEEQKQLLKTSVLCQEQLTNIVDD-TDIESIEEWYD 950 (953)
Q Consensus 885 k~~fla~isHELrnPL~~I~g~~~LL~~~~l-~e~~~~~l~~i~~~~~~L~~lI~D-LdlsrIe~G~~ 950 (953)
+.+|++.++|||||||++|.++++++..... ++..+++++.+..+.+++.+++++ +++++++.+..
T Consensus 2 ~~~~~~~~~Helr~pL~~i~~~~~~l~~~~~~~~~~~~~l~~i~~~~~~l~~~i~~l~~~~~~~~~~~ 69 (222)
T 3jz3_A 2 ERRFTSDAAHELRSPLTALKVQTEVAQLSDDDPQARKKALLQLHSGIDRATRLVDQLLTLSRLDSLDN 69 (222)
T ss_dssp --------------------------------------CEECCC-CHHHHHHHHHHHHHHHTCCCSTT
T ss_pred HHHHHHHHhHHhcCcHHHHHHHHHHHhhccCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCC
Confidence 4578999999999999999999999977443 444578888898989999999999 79999887653
No 164
>3cit_A Sensor histidine kinase; MEGA: 3.30.450.40, structural genomics, sensor histidine KIN pseudomonas syringae, PSI-2; HET: MSE; 1.90A {Pseudomonas syringae PV}
Probab=96.86 E-value=0.028 Score=53.90 Aligned_cols=136 Identities=11% Similarity=0.102 Sum_probs=92.0
Q ss_pred HHHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHhhhCCCeEEEEeecCCCCceEEEeecCCCCCCccCCCCCCCCccHHH
Q 002210 196 KSYKLAAKAISRLQSLPSGNISLLCDVLVNEVSDLTGYDRVMVYKFHEDEHGEVVAECRRPDLEPYLGFHYPATDIPQAS 275 (953)
Q Consensus 196 ~~~~~~~~~~~~l~~~~~~~~~~l~~~~v~~vr~~~g~DRVmiY~F~~d~~G~viaE~~~~~~~~~lg~~~pa~dip~~a 275 (953)
..++++..+-..|- +.+.+++++.+++..++++|+||..+|-+++| |+....+.. | | ..
T Consensus 12 ~rLrlL~e~~~~L~---~l~~~~~l~~il~~a~~~~~~d~gsL~l~d~~--~~l~~~aa~-------G--------~-~~ 70 (160)
T 3cit_A 12 ARLRLLVDTGQELI---QLPPEAMRKCVLQRACAFVAMDHGLLLEWGAD--NGVQTTARH-------G--------S-KE 70 (160)
T ss_dssp HHHHHHHHHHHHHH---HSCHHHHHHHHHHHHHHHTTCSEEEEEECC----CCCEEEEEE-------S--------C-HH
T ss_pred HHHHHHHHHHHHHh---cCCHHHHHHHHHHHHHHHhccCeeEEEEEcCC--Cceeeeecc-------C--------c-hh
Confidence 34566666666663 34679999999999999999999999999996 555433221 2 1 11
Q ss_pred HHHHHhCCceEeecCCCCCceeeeCCCCCCccccCCccccCCChhHHHHhhhcCCeeEEEEEEEEeCCcccccccccCCC
Q 002210 276 RFLIMKNKVRMICDCLAPPVKVIQDKKLDQPLSLCGSTLRAPHGCHARYMENMGSIASLVMSVTINEAEDELDNDQEQGR 355 (953)
Q Consensus 276 r~ly~~n~~r~i~D~~~~~~~l~~~~~~~~~ldl~~s~lr~~s~~h~~yl~nmgv~asl~~~i~~~~~~~~~~~~~~~~~ 355 (953)
| ...+|+++|.....-.-- +..-+..++-|+||+.. .+|
T Consensus 71 ~----l~~lr~~~~~~~~gpr~~-------------------------~~tg~~t~svl~vPL~~------------~~g 109 (160)
T 3cit_A 71 R----LSTLETTADPLAIGPQWL-------------------------ERPGTHLPCVLLLPLRG------------ADE 109 (160)
T ss_dssp H----HTTSCCCCCTTCCSCEEE-------------------------ECTTSSSCEEEEEEEEC------------SSS
T ss_pred h----hhhhhccccccccccccc-------------------------cccCcccceeEEEeeec------------CCC
Confidence 1 356666777543310000 12223457889999962 239
Q ss_pred ceeEEEeeecCC-CCCCChhHHHHHHHHHHHHHHhhHHH
Q 002210 356 KLWGLVVCHHTS-PRFVPFPLRYACEFLIQVFGVQVNKE 393 (953)
Q Consensus 356 ~LWGLi~~hh~~-pr~~~~~~r~~~~~l~~~~~~~l~~~ 393 (953)
+.+|.+.+=+.. ...+..+...+++.|+.+++.+|...
T Consensus 110 ~~~Gvlql~N~~~~~~f~~eD~e~l~lLA~~~a~aien~ 148 (160)
T 3cit_A 110 GSFGTLVLANSVAISAPDGEDIESLQLLATLLAAHLENN 148 (160)
T ss_dssp SEEEEEEEEESSCCCCCCHHHHHHHHHHHHHHHHHHHHH
T ss_pred cEEEEEEEeccCCCCCCCHHHHHHHHHHHHHHHHHHHHH
Confidence 999999997776 55788889999999999988887543
No 165
>2btz_A Pyruvate dehydrogenase kinase isoenzyme 2; GHKL motif regulation, transferase; 2.2A {Homo sapiens} PDB: 2bu2_A* 2bu5_A* 2bu6_A* 2bu7_A* 2bu8_A* 3crk_A* 1jm6_A* 3crl_A*
Probab=96.26 E-value=0.0034 Score=70.85 Aligned_cols=60 Identities=12% Similarity=-0.038 Sum_probs=45.9
Q ss_pred HHHHHHHHHHhhh-----HHHHHHHHHHhhcCCCCCHH----HHHHHH--HHHHHHHHHHhHhhh-hcccchhc
Q 002210 886 LNKLEYIRREIRK-----PLNGIAFMQNLMGTSDLSEE----QKQLLK--TSVLCQEQLTNIVDD-TDIESIEE 947 (953)
Q Consensus 886 ~~fla~isHELrn-----PL~~I~g~~~LL~~~~l~e~----~~~~l~--~i~~~~~~L~~lI~D-LdlsrIe~ 947 (953)
.++++.++||||| ||+.|.|+++++.....++. ..++++ .+.+.+.+| +|++ |++++++.
T Consensus 96 ~~~~~~~~HeLrtpl~~vPlt~i~g~~ell~~~~~~~~~~~~~~~~l~~~~i~~~~~rl--li~~ll~l~~~~~ 167 (394)
T 2btz_A 96 LSQFTDALVTIRNRHNDVVPTMAQGVLEYKDTYGDDPVSNQNIQYFLDRFYLSRISIRM--LINQHTLIFDGST 167 (394)
T ss_dssp THHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHCC---
T ss_pred HHHHHHHHHHHHhhcchhHHHHHHHHHHHHHhhcCCcccHHHHHHHHHHHHHhhhHHHH--HHHHHHHHhcccc
Confidence 3578899999999 89999999999986544433 344788 477778888 9999 89999987
No 166
>3zrx_A AF1503 protein, osmolarity sensor protein ENVZ; signaling protein, osmoregulation, OMPR, OMPC; 1.25A {Archaeoglobus fulgidus} PDB: 3zrv_A 3zrw_A 3zrw_B 2lfs_A 2lfr_A 1joy_A 2l7i_A 2y20_A 2l7h_A 2y21_A 2y0t_A 2y0q_A
Probab=96.23 E-value=0.013 Score=52.40 Aligned_cols=58 Identities=17% Similarity=0.244 Sum_probs=48.5
Q ss_pred HHHHHHHHHHHHHHhhhHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHHHHHHhHhhh-hcccc
Q 002210 882 AANSLNKLEYIRREIRKPLNGIAFMQNLMGTSDLSEEQKQLLKTSVLCQEQLTNIVDD-TDIES 944 (953)
Q Consensus 882 ~~~k~~fla~isHELrnPL~~I~g~~~LL~~~~l~e~~~~~l~~i~~~~~~L~~lI~D-Ldlsr 944 (953)
...+.++++.++||+++|++.|.++++.+... ..+..+.+...+.+|..++++ ++++|
T Consensus 57 ~~~~~~~~~~~shel~~~l~~i~~~~~~l~~~-----~~~~~~~~~~~~~~~~~~~~~l~~~~~ 115 (115)
T 3zrx_A 57 ADDRTLLMAGVSHDLRTPLTRIRLATEMMSEQ-----DGYLAESINKDIEECNAIIEQFIDYLR 115 (115)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHTSCGG-----GHHHHHHHHHHHHHHHHHHHHHHTTCC
T ss_pred HHHHHHHHHHHHHHHHhhHHHHHHHHHHHHhh-----hHHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 34466789999999999999999999988643 256778888889999999999 78875
No 167
>3bjc_A CGMP-specific 3',5'-cyclic phosphodiesterase; PDE5, erectIle dysfunction, inhibitor design, allosteric enzyme, alternative splicing, CGMP binding; HET: WAN; 2.00A {Homo sapiens} SCOP: a.211.1.2 PDB: 3mf0_A 3lfv_A 2xss_A 2k31_A*
Probab=96.17 E-value=0.00083 Score=83.95 Aligned_cols=143 Identities=7% Similarity=0.010 Sum_probs=0.0
Q ss_pred CCHHHHHHHHHHHHHhhhCCCeEEEEeecCCCCceEEEeecCCC---------CCCccCCCCCCCCccHHHHHHHHhCCc
Q 002210 214 GNISLLCDVLVNEVSDLTGYDRVMVYKFHEDEHGEVVAECRRPD---------LEPYLGFHYPATDIPQASRFLIMKNKV 284 (953)
Q Consensus 214 ~~~~~l~~~~v~~vr~~~g~DRVmiY~F~~d~~G~viaE~~~~~---------~~~~lg~~~pa~dip~~ar~ly~~n~~ 284 (953)
.+++++++.+++.+++++|+||+.||-+++++. +.++.+.... ..+.-+.++|... .-+...+..+..
T Consensus 348 ~dl~~ll~~I~~~a~~ll~a~~~~V~L~d~~~~-~l~a~a~~~~s~~~~~~~~~~~~~~~~~p~~~--gi~g~v~~~g~~ 424 (878)
T 3bjc_A 348 QSLEVILKKIAATIISFMQVQKCTIFIVDEDCS-DSFSSVFHMECEELEKSSDTLTREHDANKINY--MYAQYVKNTMEP 424 (878)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred ccHHHHHHHHHHHHHHHhCcceeEEEEEcCccc-chhHHHhhccccccccccccccccccccchhh--hHHHHHhhcCCe
Confidence 489999999999999999999999999998653 4444332211 1111133444321 112233445555
Q ss_pred eEeecCCCCCceeeeCCCCCCccccCCccccCCChhHHHHhhh---cCCeeEEEEEEEEeCCcccccccccCCCceeEEE
Q 002210 285 RMICDCLAPPVKVIQDKKLDQPLSLCGSTLRAPHGCHARYMEN---MGSIASLVMSVTINEAEDELDNDQEQGRKLWGLV 361 (953)
Q Consensus 285 r~i~D~~~~~~~l~~~~~~~~~ldl~~s~lr~~s~~h~~yl~n---mgv~asl~~~i~~~~~~~~~~~~~~~~~~LWGLi 361 (953)
-.|.|+...|- . +.+...... .++++.|++||+.+ .+|+++|.|
T Consensus 425 v~i~D~~~d~r-------~---------------~~~~~~~~g~~~~~~rS~L~vPL~~~-----------~~g~viGVL 471 (878)
T 3bjc_A 425 LNIPDVSKDKR-------F---------------PWTTENTGNVNQQCIRSLLCTPIKNG-----------KKNKVIGVC 471 (878)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred eeecCcccccc-------c---------------ccccccccCccccccceEEEEEEecC-----------CCCcEEEEE
Confidence 55666433221 0 111111222 57899999999854 016899999
Q ss_pred eeecCCC------CCCChhHHHHHHHHHHHHHHhhHH
Q 002210 362 VCHHTSP------RFVPFPLRYACEFLIQVFGVQVNK 392 (953)
Q Consensus 362 ~~hh~~p------r~~~~~~r~~~~~l~~~~~~~l~~ 392 (953)
..+++.+ +.++.....+++.++.++|+.|..
T Consensus 472 ~l~~~~~~~~G~~~~Ft~~d~~lL~~lA~~aaiAIen 508 (878)
T 3bjc_A 472 QLVNKMEENTGKVKPFNRNDEQFLEAFVIFCGLGIQN 508 (878)
T ss_dssp -------------------------------------
T ss_pred EEEEcCCCcccCCCCCCHHHHHHHHHHHHHHHHHHHH
Confidence 9988765 788888888888888888887754
No 168
>1oj5_A Steroid receptor coactivator 1A; transcriptional coactivator, complex, LXXLL motif, transcriptional regulation; 2.2A {Mus musculus} SCOP: d.110.3.8
Probab=96.01 E-value=0.011 Score=54.57 Aligned_cols=103 Identities=10% Similarity=0.068 Sum_probs=70.1
Q ss_pred CeEeecCCccEEehhHHHHHHhCCCh--hhhhcccccccccccccccccccCcchHHHHHHHHHHHhcCCCcceEEEEEE
Q 002210 754 PIFMTDEDGRCLEWNDGMEKLSGLKR--EEAIERMLIGEVFTVKNFGCRVKNHDTLTKLRIVMNKVISGQDADKILFGFF 831 (953)
Q Consensus 754 ~I~~~D~~G~i~~~N~a~~~l~G~~~--eeliGk~~~~~~~~~~~~~~~l~~~~~~~~~~~~l~~~~~g~~~~~~e~~~~ 831 (953)
-+...|.+|+|+++..... ..++.. +|++|+.+.+.+++.+.. ...+.......+..+....-.|||+
T Consensus 9 F~sRh~~dGKf~~vDq~~~-r~~~~~g~qdLlGrsiy~f~H~~D~~---------~s~l~~h~~~vl~~Gq~~S~~YRfr 78 (132)
T 1oj5_A 9 FMTKQDTTGKIISIDTSSL-RAAGRTGWEDLVRKCIYAFFQPQGRE---------PSYARQLFQEVMTRGTASSPSYRFI 78 (132)
T ss_dssp EEEEECTTCCEEEEECHHH-HTTCCSCHHHHHHHHHHHHTSCBTTB---------CCHHHHHHHHHHHHSEEECCCEEEE
T ss_pred eEEeecCCCcEEEEecccc-cccccccHHHHHHHHHHHHhCcccch---------HHHHHHHHHHHHHcCCccccceEEE
Confidence 4677899999999999987 477777 999999987666555211 0123444444444455556679999
Q ss_pred ccCCCEEEEEEEEEEeecCC-CCEEEEEEEEEeccH
Q 002210 832 DQQGKYVEALLSANKRTNAE-GKISGILCFLHVASP 866 (953)
Q Consensus 832 ~kdG~~~~v~~s~~pi~d~~-G~i~g~v~v~~DITe 866 (953)
.++|.++|+......+++.- +++-.++|+-.-+.+
T Consensus 79 ~k~g~~V~~qT~sk~f~np~t~e~e~Ivs~n~v~r~ 114 (132)
T 1oj5_A 79 LNDGTMLSAHTRCKLCYPQSPDMQPFIMGIHIIDRE 114 (132)
T ss_dssp CTTSCEEEEEEEEEEECC----CCCEEEEEEEEECC
T ss_pred ecCCcEEEEEEEEEEecCCCCCCCCEEEEEEEEEcC
Confidence 99999999999888887743 344445565544443
No 169
>2e0a_A Pyruvate dehydrogenase kinase isozyme 4; PDK4, ATP-binding, structural genomics, NPPSFA, NATI project on protein structural and functional analyses; HET: ANP; 1.86A {Homo sapiens} PDB: 2zdx_A* 2zdy_A* 2zkj_A* 3d2r_A*
Probab=95.96 E-value=0.012 Score=66.38 Aligned_cols=58 Identities=5% Similarity=0.004 Sum_probs=47.4
Q ss_pred HHHHHHHHHHhhh-----HHHHHHHHHHhhcCCC----CCHHHHHHHH--HHHHHHHHHHhHhhh-hc-ccch
Q 002210 886 LNKLEYIRREIRK-----PLNGIAFMQNLMGTSD----LSEEQKQLLK--TSVLCQEQLTNIVDD-TD-IESI 945 (953)
Q Consensus 886 ~~fla~isHELrn-----PL~~I~g~~~LL~~~~----l~e~~~~~l~--~i~~~~~~L~~lI~D-Ld-lsrI 945 (953)
.++++.++||||| ||+.|.|+++++.... ..++.+++++ .+.+.+.+| +|++ |+ ++++
T Consensus 96 ~~~~~~~~HeLrtpl~~vPlt~i~g~~el~~~~~~~~~~~~~~~~~l~~~~i~~~~~rl--li~~lL~l~~~~ 166 (394)
T 2e0a_A 96 LSDFVDTLIKVRNRHHNVVPTMAQGIIEYKDACTVDPVTNQNLQYFLDRFYMNRISTRM--LMNQHILIFSDS 166 (394)
T ss_dssp HHHHHHHHHHHHHHHTTHHHHHHHHHHHHHTTSCCCTTTCHHHHHHHHHHHHHHHHHHH--HHHHHHHHHCSS
T ss_pred HHHHHHHHHHHHhhhhhhHHHHHHHHHHHHhhhccCcccHHHHHHHHHHHHHHHHHHHH--HHHHHHHHhhcc
Confidence 3577888999999 8999999999887532 4566788999 688888999 9999 87 7776
No 170
>1oj5_A Steroid receptor coactivator 1A; transcriptional coactivator, complex, LXXLL motif, transcriptional regulation; 2.2A {Mus musculus} SCOP: d.110.3.8
Probab=95.91 E-value=0.01 Score=54.79 Aligned_cols=102 Identities=3% Similarity=-0.051 Sum_probs=73.3
Q ss_pred CccEEEEcCCCcEEecCHHHHHHhCCCc--chhcCCCccccccCCcHH--HHHHHHHHHhcccceEEEEEEEcccCCCCC
Q 002210 621 AVPILAVDASGNVNGWNSKAAELTGLTV--DQAIGTALVDLVAGDSVD--VVKNMLSSAFLEERNVEIKLRAFGPRETSG 696 (953)
Q Consensus 621 ~~~I~~~D~dg~i~~~N~a~~~l~G~~~--~eliG~~~~dl~~~~~~~--~~~~~l~~~l~~~~~~e~~~~~~~~~~dG~ 696 (953)
..-+.-.|.+|+|+++..+.. ..++.. +|++|+.+.+++|++|.+ .+.+....++..+......++. +.++|+
T Consensus 7 e~F~sRh~~dGKf~~vDq~~~-r~~~~~g~qdLlGrsiy~f~H~~D~~~s~l~~h~~~vl~~Gq~~S~~YRf--r~k~g~ 83 (132)
T 1oj5_A 7 ESFMTKQDTTGKIISIDTSSL-RAAGRTGWEDLVRKCIYAFFQPQGREPSYARQLFQEVMTRGTASSPSYRF--ILNDGT 83 (132)
T ss_dssp CEEEEEECTTCCEEEEECHHH-HTTCCSCHHHHHHHHHHHHTSCBTTBCCHHHHHHHHHHHHSEEECCCEEE--ECTTSC
T ss_pred eeeEEeecCCCcEEEEecccc-cccccccHHHHHHHHHHHHhCcccchHHHHHHHHHHHHHcCCccccceEE--EecCCc
Confidence 345667899999999999887 477777 899999999999999966 8888888888555444433333 345899
Q ss_pred EEEEEEEEEEeecC-CCCEEEEEEEEEecc
Q 002210 697 PVILVVNACCTQDT-KENVIGVCFVGQDIT 725 (953)
Q Consensus 697 ~~~v~v~~~pi~d~-~g~v~gvv~v~~DIT 725 (953)
.+|+......+++. .+++..++++-.=+.
T Consensus 84 ~V~~qT~sk~f~np~t~e~e~Ivs~n~v~r 113 (132)
T 1oj5_A 84 MLSAHTRCKLCYPQSPDMQPFIMGIHIIDR 113 (132)
T ss_dssp EEEEEEEEEEECC----CCCEEEEEEEEEC
T ss_pred EEEEEEEEEEecCCCCCCCCEEEEEEEEEc
Confidence 99999888888774 244445555433333
No 171
>2q8g_A [pyruvate dehydrogenase [lipoamide]] kinase isozy; GHKL ATPase/kinase family, pyruvate dehydrogenase complex, mitochondrial kinase; HET: AZX; 1.90A {Homo sapiens} PDB: 2q8f_A* 2q8h_A
Probab=95.44 E-value=0.016 Score=65.47 Aligned_cols=59 Identities=5% Similarity=-0.041 Sum_probs=43.1
Q ss_pred HHHHHHHHHhhh-----HHHHHHHHHHhhcCCCCC----HHHHHHHHH--HHHHHHHHHhHhhh-hcccchhc
Q 002210 887 NKLEYIRREIRK-----PLNGIAFMQNLMGTSDLS----EEQKQLLKT--SVLCQEQLTNIVDD-TDIESIEE 947 (953)
Q Consensus 887 ~fla~isHELrn-----PL~~I~g~~~LL~~~~l~----e~~~~~l~~--i~~~~~~L~~lI~D-LdlsrIe~ 947 (953)
+++..++||||| ||+.|.|+++++.....+ ++.+++++. +.+.+.+| +|++ |+++|+|.
T Consensus 107 ~~f~~~~HeLrt~~~~vPLt~i~g~~ell~~~~~~~~~~~~~~~~l~~~~~~~~~~rl--li~~ll~l~~~e~ 177 (407)
T 2q8g_A 107 YDFTDTVIRIRNRHNDVIPTMAQGVIEYKESFGVDPVTSQNVQYFLDRFYMSRISIRM--LLNQHSLLFGGKG 177 (407)
T ss_dssp HHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHC--CHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHC---
T ss_pred HHHHHHHHHHHhhhccchHHHHHHHHHHHHhhccCccCHHHHHHHHHHHHHHHHHHHH--HHHHHHHHhcccc
Confidence 344555599999 999999999988764333 345778887 67777888 9999 89999976
No 172
>1y8o_A [pyruvate dehydrogenase [lipoamide]] kinase isozy; pyruvate dehydrogenase kinase 3, lipoyl-bearing domain; HET: RED ADP; 2.48A {Homo sapiens} SCOP: a.29.5.1 d.122.1.4 PDB: 1y8n_A* 1y8p_A* 2pnr_A* 2q8i_A*
Probab=92.82 E-value=0.096 Score=59.35 Aligned_cols=58 Identities=9% Similarity=-0.011 Sum_probs=40.7
Q ss_pred HHHHHHHhhhHHH-----HHHHHHHhhcCCCC----CHHHHHHHHHHHHH--HHHHHhHhhh-hcc-cchhcc
Q 002210 889 LEYIRREIRKPLN-----GIAFMQNLMGTSDL----SEEQKQLLKTSVLC--QEQLTNIVDD-TDI-ESIEEW 948 (953)
Q Consensus 889 la~isHELrnPL~-----~I~g~~~LL~~~~l----~e~~~~~l~~i~~~--~~~L~~lI~D-Ldl-srIe~G 948 (953)
++.++|||||||+ .|.|+++++..... .++..++++.+... +.+| +|++ |.+ ++.+.+
T Consensus 121 f~~~~HeLrtPL~~vi~~~i~g~~ell~~~~~~~~~~~~~~~~l~~i~~~~~~~rl--li~~lL~l~~~~~~~ 191 (419)
T 1y8o_A 121 FLQVLIKVRNRHNDVVPTMAQGVIEYKEKFGFDPFISTNIQYFLDRFYTNRISFRM--LINQHTLLFGGDTNP 191 (419)
T ss_dssp HHHHHHHHHHHGGGHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHSCCSSC
T ss_pred HHHHHHHHhcchhhhHHHHHHHHHHHHHHhccCcccHHHHHHHHHHHHHHHHHHHH--HHHHHHHHhcccccC
Confidence 4556799999999 88999998875322 34566788886544 6777 9999 544 444333
No 173
>3ehh_A Sensor kinase (YOCF protein); four-helix bundle, GHL ATPase domain, transferase; HET: MSE ADP; 2.10A {Bacillus subtilis} PDB: 3ehj_A* 3gie_A* 3gif_A* 3gig_A* 3ehf_A*
Probab=91.99 E-value=0.35 Score=48.70 Aligned_cols=57 Identities=12% Similarity=0.063 Sum_probs=44.1
Q ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHHhhcC--CCCCHHHHHHHHHHHHHHHHHHhHhhh
Q 002210 883 ANSLNKLEYIRREIRKPLNGIAFMQNLMGT--SDLSEEQKQLLKTSVLCQEQLTNIVDD 939 (953)
Q Consensus 883 ~~k~~fla~isHELrnPL~~I~g~~~LL~~--~~l~e~~~~~l~~i~~~~~~L~~lI~D 939 (953)
..+.++...++|++++||++|.++++++.. ...++..++.+..+....+++...+++
T Consensus 26 ~er~~la~~l~~~l~~~L~~i~~~~~~~~~~~~~~~~~~~~~l~~i~~~~~~~~~~~r~ 84 (218)
T 3ehh_A 26 EERQRMARDLVDTLGQKLSLMGLKSDLARKLIYKDPEQAARELKSVQQTARTSLNEVRK 84 (218)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhhhhHHHHHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345667888999999999999999998876 334455677788887777777776666
No 174
>3szt_A QCSR, quorum-sensing control repressor; quorum sensing acyl-homoserine lactone, helix-turn-helix, transcription factor, 3-OXO-C12 HSL; HET: OHN; 2.55A {Pseudomonas aeruginosa}
Probab=87.98 E-value=4.3 Score=41.61 Aligned_cols=138 Identities=11% Similarity=0.015 Sum_probs=84.0
Q ss_pred HHHHhccCCCCCHHHHHHHHHHHHHhhhCCCeEEEEeecCCCCceEEEeecCCCCCCccCCCCCCCCccHHHHHHHHhCC
Q 002210 204 AISRLQSLPSGNISLLCDVLVNEVSDLTGYDRVMVYKFHEDEHGEVVAECRRPDLEPYLGFHYPATDIPQASRFLIMKNK 283 (953)
Q Consensus 204 ~~~~l~~~~~~~~~~l~~~~v~~vr~~~g~DRVmiY~F~~d~~G~viaE~~~~~~~~~lg~~~pa~dip~~ar~ly~~n~ 283 (953)
.+.++.. +.+.+++.+.+ ..+.+.+|||++.++-+.+...+ .+ ..+ --+..|+...+.|..+.
T Consensus 8 ~~~~l~~--a~~~~~l~~~l-~~~~~~lGf~~~~y~~~~~~~~~-------~~--~~~-----i~~~~p~~w~~~Y~~~~ 70 (237)
T 3szt_A 8 YLEILSR--ITTEEEFFSLV-LEICGNYGFEFFSFGARAPFPLT-------AP--KYH-----FLSNYPGEWKSRYISED 70 (237)
T ss_dssp HHHHHHH--CCSHHHHHHHH-HHHHHHTTCSEEEEEEECCCSTT-------SC--CEE-----EEECCCHHHHHHHHHTT
T ss_pred HHHHHHc--CCCHHHHHHHH-HHHHHHcCCCeEEEEeecCCCCC-------CC--CeE-----eeCCCCHHHHHHHHHCC
Confidence 4566777 55888988887 77888999999999877653221 01 011 12456889999999987
Q ss_pred ceEeecCCCCCceeeeCCCCCCccccCCccccCCChhHHHHhhhcCCeeEEEEEEEEeCCcccccccccCCCceeEEEee
Q 002210 284 VRMICDCLAPPVKVIQDKKLDQPLSLCGSTLRAPHGCHARYMENMGSIASLVMSVTINEAEDELDNDQEQGRKLWGLVVC 363 (953)
Q Consensus 284 ~r~i~D~~~~~~~l~~~~~~~~~ldl~~s~lr~~s~~h~~yl~nmgv~asl~~~i~~~~~~~~~~~~~~~~~~LWGLi~~ 363 (953)
.-.+ | ||-.. ......|+.-+....+. .+.-.++.+.+|++.-+++|+.-. +..+|+++.
T Consensus 71 y~~~-D----Pv~~~-~~~~~~p~~W~~~~~~~-~~~~~~~a~~~gl~~G~~~p~~~~-------------~g~~g~ls~ 130 (237)
T 3szt_A 71 YTSI-D----PIVRH-GLLEYTPLIWNGEDFQE-NRFFWEEALHHGIRHGWSIPVRGK-------------YGLISMLSL 130 (237)
T ss_dssp GGGT-C----HHHHH-HHHSCSCEEEETTTCSS-CHHHHHHHHHTTCCEEEEEEEECG-------------GGCEEEEEE
T ss_pred Cccc-C----hHhhh-hcCCCCCEEeCCCCccc-HHHHHHHHHHcCCCCEEEEEeeCC-------------CCCeEEEEE
Confidence 5322 1 21110 00112233322222222 255567788999999999999754 678899988
Q ss_pred ecCCCCCCChhHHHHH
Q 002210 364 HHTSPRFVPFPLRYAC 379 (953)
Q Consensus 364 hh~~pr~~~~~~r~~~ 379 (953)
....+. ....+....
T Consensus 131 ~~~~~~-~~~~~~~~~ 145 (237)
T 3szt_A 131 VRSSES-IAATEILEK 145 (237)
T ss_dssp EESSSC-CCHHHHHHH
T ss_pred ecCCCc-CCHHHHHHH
Confidence 766543 344433333
No 175
>3eea_A GAF domain/HD domain protein; structural genomics, PSI, MCSG, protein structure initiative, midwest center for structural genomics; HET: PG6; 1.80A {Geobacter sulfurreducens}
Probab=85.94 E-value=17 Score=33.31 Aligned_cols=138 Identities=14% Similarity=0.170 Sum_probs=90.8
Q ss_pred CHHHHHHHHHHHHHhhhCCCeEEEEeecCCCCceEEEeecCCCCCC-ccC----CCCCCCCccHHHHHHHHhCCceEeec
Q 002210 215 NISLLCDVLVNEVSDLTGYDRVMVYKFHEDEHGEVVAECRRPDLEP-YLG----FHYPATDIPQASRFLIMKNKVRMICD 289 (953)
Q Consensus 215 ~~~~l~~~~v~~vr~~~g~DRVmiY~F~~d~~G~viaE~~~~~~~~-~lg----~~~pa~dip~~ar~ly~~n~~r~i~D 289 (953)
+.++..+...+-++++.|+-=..||-||..-.---=|-| -|+++ |+- ...--.-||--..-|-.+.. +
T Consensus 13 ~vd~~~~~l~rll~k~~~~~w~~vy~~drerrdf~~~rs--~~~pa~~l~~~r~mpl~p~k~pllk~~lr~~~h--l--- 85 (162)
T 3eea_A 13 DVDEVIKDLSRLLRKLVKTRWIAVYFFDRERRDFAPARS--TGLPASFLPVFREMPLAPDKIPLLKSMLRKRQH--L--- 85 (162)
T ss_dssp CHHHHHHHHHHHHHHHSCCSEEEEEEECC--CSEEEEEE--ESCCGGGHHHHHHCCBCTTTCHHHHHHHHHTCC--E---
T ss_pred cHHHHHHHHHHHHHHHhCCceEEEEEeehhhhccccccc--cCCchhhhHHHhhCCCCCCccHHHHHHHHhcCc--c---
Confidence 788888888899999999999999999987655443433 33332 221 11111123322211111111 1
Q ss_pred CCCCCceeeeCCCCCCccccCCccccCCChhHHHHhhhcCCeeEEEEEEEEeCCcccccccccCCCceeEEEeeecCCCC
Q 002210 290 CLAPPVKVIQDKKLDQPLSLCGSTLRAPHGCHARYMENMGSIASLVMSVTINEAEDELDNDQEQGRKLWGLVVCHHTSPR 369 (953)
Q Consensus 290 ~~~~~~~l~~~~~~~~~ldl~~s~lr~~s~~h~~yl~nmgv~asl~~~i~~~~~~~~~~~~~~~~~~LWGLi~~hh~~pr 369 (953)
.++ |-+.|+| ..|--..+++|+.+-+ +|++++ ++.=|.+.+-..++|
T Consensus 86 --------l~~-------dp~~s~l--~tp~l~k~~~~~~ILg---VPL~~g-------------~qVIGVLFaArR~~R 132 (162)
T 3eea_A 86 --------MLT-------DPGSSDL--LTPKLRKLLRNLCVLA---VPMVVR-------------TQVIGAVFMARTRDN 132 (162)
T ss_dssp --------EES-------CGGGCTT--SCHHHHHHTTTEEEEE---EEEEET-------------TEEEEEEEEEEETTS
T ss_pred --------ccC-------CCCcchh--ccHHHHHHHhhCeEEE---ecceeC-------------CEEEEEEEEeccccc
Confidence 111 1122222 3588889999997765 999998 899999999999999
Q ss_pred -CCChhHHHHHHHHHHHHHHhhHH
Q 002210 370 -FVPFPLRYACEFLIQVFGVQVNK 392 (953)
Q Consensus 370 -~~~~~~r~~~~~l~~~~~~~l~~ 392 (953)
..+++++.+..-|+...++.|+.
T Consensus 133 ~~Fs~dEiALL~SLAahAAIAIdn 156 (162)
T 3eea_A 133 PPFSDAETAIIRDLVSHAALVVSH 156 (162)
T ss_dssp CCCCHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHH
Confidence 88999999998888888887754
No 176
>1b3q_A Protein (chemotaxis protein CHEA); histine kinase, signal transduction, multi-domai protein, transferase; 2.60A {Thermotoga maritima} SCOP: a.30.2.1 b.40.7.1 d.122.1.3 PDB: 2ch4_A* 3ur1_A
Probab=85.79 E-value=0.48 Score=52.72 Aligned_cols=50 Identities=16% Similarity=0.075 Sum_probs=39.0
Q ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHHHHHHhHhhh-hccc
Q 002210 883 ANSLNKLEYIRREIRKPLNGIAFMQNLMGTSDLSEEQKQLLKTSVLCQEQLTNIVDD-TDIE 943 (953)
Q Consensus 883 ~~k~~fla~isHELrnPL~~I~g~~~LL~~~~l~e~~~~~l~~i~~~~~~L~~lI~D-Ldls 943 (953)
..|.+++.+++|||++|++.|.++.+.+.. +.+..+.++|.+++++ ++++
T Consensus 8 ~~k~d~l~~~~~el~~~~~~l~~~~~~~~~-----------~~i~~~~~~l~~l~~~l~~~~ 58 (379)
T 1b3q_A 8 IEKLDNLMDLMGELVIARSRILETLKKYNI-----------KELDESLSHLSRITLDLQNVV 58 (379)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHTTSSCCC-----------HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhH-----------HHHHHHHHHHHHHHHHHHHHH
Confidence 357899999999999999999998877753 4466666777777777 4544
No 177
>2ool_A Sensor protein; bacteriophytochrome, photoconversion, photoreceptor, biliver signaling protein; HET: LBV; 2.20A {Rhodopseudomonas palustris} SCOP: d.110.2.1 d.110.3.9
Probab=81.66 E-value=1.9 Score=46.79 Aligned_cols=47 Identities=6% Similarity=0.126 Sum_probs=38.9
Q ss_pred EEEcC-CCcEEecCHHHHHHhCCCcchhcCCCccccccCCcHHHHHHH
Q 002210 625 LAVDA-SGNVNGWNSKAAELTGLTVDQAIGTALVDLVAGDSVDVVKNM 671 (953)
Q Consensus 625 ~~~D~-dg~i~~~N~a~~~l~G~~~~eliG~~~~dl~~~~~~~~~~~~ 671 (953)
+++|. +++|+.+|..+.+++|+++++++|+++.++++++....+...
T Consensus 46 l~~~~~~~~i~~~S~N~~~~lg~~~~~llG~~l~~ll~~~~~~~l~~~ 93 (337)
T 2ool_A 46 FVVSETDLRIASVSANVEDLLRQPPASLLNVPIAHYLTAASAARLTHA 93 (337)
T ss_dssp EEECTTTCBEEEEETTHHHHHSSCGGGGTTCBGGGGBCHHHHHHHHHH
T ss_pred EEEECCCCEEEEEehhHHHHHCcCHHHHcCCCHHHHcCHHHHHHHHHH
Confidence 44565 589999999999999999999999999999987666644443
No 178
>4dah_A Sporulation kinase D; alpha-beta-alpha structure, structural genomics, midwest CEN structural genomics (MCSG), PSI-biology, PAS-like fold; 2.03A {Bacillus subtilis} PDB: 4dbj_A 4dbi_A 4dak_A 3fos_A
Probab=77.95 E-value=34 Score=33.70 Aligned_cols=124 Identities=15% Similarity=0.097 Sum_probs=69.3
Q ss_pred HHHHHHHHHHHHhcCc--cEEEEcCCCcEEecCHHHHHHhCCCcchhcCCCccccccCCcHHHHHHHHHHHhcccceEEE
Q 002210 607 RIITNEMVRLIETAAV--PILAVDASGNVNGWNSKAAELTGLTVDQAIGTALVDLVAGDSVDVVKNMLSSAFLEERNVEI 684 (953)
Q Consensus 607 ~~~~~~l~~lle~~~~--~I~~~D~dg~i~~~N~a~~~l~G~~~~eliG~~~~dl~~~~~~~~~~~~l~~~l~~~~~~e~ 684 (953)
.+....+..+.+..+. .++++|.+|+++..+.. ...+. ...+++.+ ..++..++.+-.
T Consensus 54 ~~~~~~L~~~~~~~~~~~~i~i~d~~G~~~~~~~~----------~~~~~------~~~~r~~f----~~a~~~~~~~is 113 (217)
T 4dah_A 54 KKMQSILEKTFDSEPRFSGLYFLNAKGDVTASTTE----------LKTKV------NLADRSFF----IKAKETKKTVIS 113 (217)
T ss_dssp HHHHHHHHHHHTTCTTEEEEEEEETTCBEEEESSC----------CSSCC------BCTTSHHH----HHHHHHCSCEEC
T ss_pred HHHHHHHHHHHhcCCcccEEEEECCCCcEEEecCC----------CCCCC------CcchhHHH----HHHHhcCCcEEe
Confidence 3445556666665554 68899999999876530 00111 12233433 333432332211
Q ss_pred EEEEcccCCCCCEEEEEEEEEEeecCCCCEEEEEEEEEecchhHHHHHHHHHHHHHHHHHHhCCCCCCCCeEeecCCccE
Q 002210 685 KLRAFGPRETSGPVILVVNACCTQDTKENVIGVCFVGQDITGQKLVMDKYTRIQGDYVGIVSSPSALIPPIFMTDEDGRC 764 (953)
Q Consensus 685 ~~~~~~~~~dG~~~~v~v~~~pi~d~~g~v~gvv~v~~DITerk~~E~~L~~se~~~~~i~e~~~~li~~I~~~D~~G~i 764 (953)
.... -...|. ++..-+.|+++.+|++.|++++..++..... .+..+ .... -++++|.+|++
T Consensus 114 ~~~~--~~~~g~--~~i~ia~pi~~~~g~~~Gvl~~~i~l~~l~~----------~~~~~--~~gg---~~~l~d~~G~i 174 (217)
T 4dah_A 114 DSYS--SRITGQ--PIFTICVPVLDSKRNVTDYLVAAIQIDYLKN----------LINLL--SPDV---YIEVVNQDGKM 174 (217)
T ss_dssp CCEE--CTTTCS--EEEEEEEEEECTTSCEEEEEEEEEEHHHHHH----------HHHHH--CTTS---CEEEEETTSCE
T ss_pred ceEE--cCCCCC--EEEEEEEEEECCCCCEEEEEEEEEcHHHHHH----------HHHhc--CCCc---EEEEEcCCCCE
Confidence 1111 112344 4555778999889999999998777655322 12222 1122 58999999988
Q ss_pred EehhH
Q 002210 765 LEWND 769 (953)
Q Consensus 765 ~~~N~ 769 (953)
++-+.
T Consensus 175 i~~~~ 179 (217)
T 4dah_A 175 IFASG 179 (217)
T ss_dssp EEEES
T ss_pred EEeCC
Confidence 76543
No 179
>2w1r_A Spovt, stage V sporulation protein T; regulatory GAF domain of spovt, transcription, transcription regulation, repressor, activator; 1.50A {Bacillus subtilis}
Probab=77.40 E-value=7.8 Score=35.28 Aligned_cols=120 Identities=14% Similarity=0.114 Sum_probs=80.3
Q ss_pred HHHHHHHHHHhhhCCCeEEEEeecCCCCceEEEeecCCCCCCccCCCCCCCCccHHHHHHHHhCCceEeecCCCCCceee
Q 002210 219 LCDVLVNEVSDLTGYDRVMVYKFHEDEHGEVVAECRRPDLEPYLGFHYPATDIPQASRFLIMKNKVRMICDCLAPPVKVI 298 (953)
Q Consensus 219 l~~~~v~~vr~~~g~DRVmiY~F~~d~~G~viaE~~~~~~~~~lg~~~pa~dip~~ar~ly~~n~~r~i~D~~~~~~~l~ 298 (953)
.++..++-+.+.||+ =|.|- | .-.|+|=+-.+ -..|+ | ..|+...+.....+++.++.+... .++.
T Consensus 3 ~a~~~AeiI~~~~~~-aV~It--D---~~~ilA~~G~g-~~~~~----~-~~is~~~~~~i~~~k~~~~~~~~~--~~~~ 68 (123)
T 2w1r_A 3 FAKEYADALYDSLGH-SVLIC--D---RDVYIAVSGSS-KKDYL----N-KSISEMLERTMDQRSSVLESDAKS--VQLV 68 (123)
T ss_dssp HHHHHHHHHHHHHCS-EEEEE--C---SSBEEEEESSC-HHHHB----T-CBBCHHHHHHHHHCSCEEESSCEE--EESB
T ss_pred HHHHHHHHHHHHHCC-eEEEE--c---CccEEEEEecC-hhhcC----C-CccCHHHHHHHHcCCEEEEcCCcc--cccc
Confidence 345667778899999 77774 2 22466654322 12233 3 467888999999999988866321 1111
Q ss_pred eCCCCCCccccCCccccCCChhHHHHhhhcCCeeEEEEEEEEeCCcccccccccCCCceeEEEeeecCCCCCCChhHHHH
Q 002210 299 QDKKLDQPLSLCGSTLRAPHGCHARYMENMGSIASLVMSVTINEAEDELDNDQEQGRKLWGLVVCHHTSPRFVPFPLRYA 378 (953)
Q Consensus 299 ~~~~~~~~ldl~~s~lr~~s~~h~~yl~nmgv~asl~~~i~~~~~~~~~~~~~~~~~~LWGLi~~hh~~pr~~~~~~r~~ 378 (953)
.. + +-...|.+++||+.+ |+.=|.|.-. +..+.+..-++.+
T Consensus 69 ~~------------------~-------~~~~~s~ii~PI~~~-------------g~viG~i~l~-~~~~~~~~~~~~l 109 (123)
T 2w1r_A 69 NG------------------I-------DEDMNSYTVGPIVAN-------------GDPIGAVVIF-SKDQTMGEVEHKA 109 (123)
T ss_dssp TT------------------C-------EEEESEEEEEEEEET-------------TEEEEEEEEE-ESSSCCCHHHHHH
T ss_pred CC------------------C-------CCCeeEEEEEEEEEC-------------CEEEEEEEEE-EcCCCCCHHHHHH
Confidence 00 0 012488999999988 8999999888 6666689999999
Q ss_pred HHHHHHHHHHhhH
Q 002210 379 CEFLIQVFGVQVN 391 (953)
Q Consensus 379 ~~~l~~~~~~~l~ 391 (953)
.+-+++.||.|+.
T Consensus 110 a~gla~lls~Qme 122 (123)
T 2w1r_A 110 VETAAGFLARQME 122 (123)
T ss_dssp HHHHHHHHC----
T ss_pred HHHHHHHHHHHhc
Confidence 9999999999874
No 180
>4ew7_A Conjugative transfer: regulation; alpha-beta-alpha structure, structural genomics, midwest CEN structural genomics (MCSG), PSI-biology; 1.67A {Salmonella enterica subsp}
Probab=77.25 E-value=20 Score=30.89 Aligned_cols=41 Identities=17% Similarity=0.156 Sum_probs=34.0
Q ss_pred HHHHHHhcCccEEEEcCCCcEEecCHHHHHHhCCCcchhcC
Q 002210 613 MVRLIETAAVPILAVDASGNVNGWNSKAAELTGLTVDQAIG 653 (953)
Q Consensus 613 l~~lle~~~~~I~~~D~dg~i~~~N~a~~~l~G~~~~eliG 653 (953)
.+.+..++|+++.+-+...+|+|.|.++.+||-.+..-+-|
T Consensus 22 iq~iY~nSPVpVCVRNq~RkilYaN~aF~elF~Ked~~~sg 62 (127)
T 4ew7_A 22 IQDIYKNSPVPVCVRNQSRKIIYANGAFIELFSKEDQPLSG 62 (127)
T ss_dssp HHHHHTTCSSCEEEECTTSCEEEECHHHHHHTTSCCCGGGC
T ss_pred HHhhhcCCCccEEEecccceEEEecchHHHHhhcccCcccC
Confidence 45688999999999999999999999999998655443333
No 181
>1p0z_A Sensor kinase CITA; transferase; HET: FLC MO7; 1.60A {Klebsiella pneumoniae} SCOP: d.110.6.1 PDB: 2v9a_A 2j80_A*
Probab=75.47 E-value=7.1 Score=35.75 Aligned_cols=31 Identities=23% Similarity=0.275 Sum_probs=22.8
Q ss_pred CCEEEEEEEEEEeecCCCCEEEEEEEEEecc
Q 002210 835 GKYVEALLSANKRTNAEGKISGILCFLHVAS 865 (953)
Q Consensus 835 G~~~~v~~s~~pi~d~~G~i~g~v~v~~DIT 865 (953)
|...+......|++|.+|+++|++++..++.
T Consensus 96 g~~g~~~~~~~PV~~~~g~viGvv~vg~~l~ 126 (131)
T 1p0z_A 96 GSLGSSLRGKSPIQDATGKVIGIVSVGYTIE 126 (131)
T ss_dssp ETTEEEEEEEEEEECTTCCEEEEEEEEEEGG
T ss_pred ccceeeEEEEEeEECCCCCEEEEEEEEEEhH
Confidence 3333444555699988999999999887764
No 182
>3qp6_A CVIR transcriptional regulator; quorum sensing, agonist, antagonist, LUXR, acylated homoseri lactone, transcription factor; HET: HL6; 2.00A {Chromobacterium violaceum} PDB: 3qp5_A*
Probab=69.27 E-value=70 Score=33.00 Aligned_cols=133 Identities=10% Similarity=0.012 Sum_probs=81.4
Q ss_pred HHHHHHHHHHhccCCCCCHHHHHHHHHHHHHhhhCCCeEEEEeecCCCCceE-EEeecCCCCCCccCCCCCCCCccHHHH
Q 002210 198 YKLAAKAISRLQSLPSGNISLLCDVLVNEVSDLTGYDRVMVYKFHEDEHGEV-VAECRRPDLEPYLGFHYPATDIPQASR 276 (953)
Q Consensus 198 ~~~~~~~~~~l~~~~~~~~~~l~~~~v~~vr~~~g~DRVmiY~F~~d~~G~v-iaE~~~~~~~~~lg~~~pa~dip~~ar 276 (953)
+..+...+.++.. +.+.+++. ..+..+.+.+|||++..+-..+...+.. -.+ .+ -.+..|..+.
T Consensus 21 ~~~l~~~l~~l~~--a~~~~~l~-~~l~~~~~~lGf~~~~y~~~~~~~~~~~~~~~-------~~-----i~~~yp~~W~ 85 (265)
T 3qp6_A 21 QWTLLEWIHMAGH--IETEGELK-AFLDNILSQAPSDRIILVLGRLNNQNQIQRME-------KV-----LNVSYPSDWL 85 (265)
T ss_dssp HHHHHHHHHHHTT--CCSHHHHH-HHHHHHTCSSTTCEEEEEEEEECTTSCEEEEE-------EE-----EESSCCHHHH
T ss_pred HHHHHHHHHHHhc--CCCHHHHH-HHHHHHHHHcCCCEEEEEeecCCCCccccccc-------ce-----eecCCcHHHH
Confidence 4455678899998 55888888 5567888899999998865544332211 000 11 1355688999
Q ss_pred HHHHhCCceEeecCCCCCceeeeCCCCCCccccCCccccCCChh---HHHHhhhcCCeeEEEEEE-EEeCCccccccccc
Q 002210 277 FLIMKNKVRMICDCLAPPVKVIQDKKLDQPLSLCGSTLRAPHGC---HARYMENMGSIASLVMSV-TINEAEDELDNDQE 352 (953)
Q Consensus 277 ~ly~~n~~r~i~D~~~~~~~l~~~~~~~~~ldl~~s~lr~~s~~---h~~yl~nmgv~asl~~~i-~~~~~~~~~~~~~~ 352 (953)
+.|..+..-.| | | ++.......|+.-+....+..++. -.+..+.+|+..-+++|+ .-.
T Consensus 86 ~~Y~~~~y~~~-D----P--vv~~~~~~~p~~W~~~~~~~~~~~~~~~~~~a~~~Gl~~G~tipi~~~~----------- 147 (265)
T 3qp6_A 86 NQYSQENFAQH-D----P--IMRIHLGQGPVIWEERFSRAKGSEEKRFIAEASSNGMGSGITFSAASDR----------- 147 (265)
T ss_dssp HHHHHTTGGGT-C----G--GGGCCTTSSCEEHHHHHTTCCSHHHHHHHHHHHHTTCSSEEEEEEECSS-----------
T ss_pred HHHHHCcCccc-C----h--HHHHhcCCCCEEECCcccccCChhHHHHHHHHHHcCCccceEEEEEEcC-----------
Confidence 99998775322 1 2 221111334443332211222333 345568999999999999 644
Q ss_pred CCCceeEEEeeec
Q 002210 353 QGRKLWGLVVCHH 365 (953)
Q Consensus 353 ~~~~LWGLi~~hh 365 (953)
+...|++....
T Consensus 148 --~g~~g~ls~~~ 158 (265)
T 3qp6_A 148 --NNVGSILSIGG 158 (265)
T ss_dssp --SSEEEEEEEES
T ss_pred --CCCEEEEEeec
Confidence 56778887766
No 183
>3e4o_A C4-dicarboxylate transport sensor protein DCTB; PAS domain, N-TERM helical dimerization domain, transferase; 2.30A {Sinorhizobium meliloti} PDB: 3e4p_A 3e4q_A 2zbb_A
Probab=68.37 E-value=42 Score=35.61 Aligned_cols=120 Identities=18% Similarity=0.186 Sum_probs=65.7
Q ss_pred HHHHHHHHHHhc-CccEEEEcCCCcEEecCHHHHHHhCCCcchhcCCCccccccCCcHHHHHHHHHHHhcccceEEEEEE
Q 002210 609 ITNEMVRLIETA-AVPILAVDASGNVNGWNSKAAELTGLTVDQAIGTALVDLVAGDSVDVVKNMLSSAFLEERNVEIKLR 687 (953)
Q Consensus 609 ~~~~l~~lle~~-~~~I~~~D~dg~i~~~N~a~~~l~G~~~~eliG~~~~dl~~~~~~~~~~~~l~~~l~~~~~~e~~~~ 687 (953)
....+..+.+.. -..|++.|.+|+++..+.. -.+...+|.++ .+++ .+.+++.......+.
T Consensus 100 l~~~L~~~~~~~~~~~i~v~d~~G~viass~~------~~p~~~~g~d~------~~R~----yf~~Al~g~~~~~~~-- 161 (305)
T 3e4o_A 100 INRKLEALATSAEAAVIYLIDRSGVAVAASNW------QEPTSFVGNDY------AFRD----YFRLAVRDGMAEHFA-- 161 (305)
T ss_dssp HHHHHHHHHHHSSCSEEEEEETTSBEEEETTT------TSTTCCTTCBC------TTSH----HHHHHHHHSEEEEEE--
T ss_pred HHHHHHHHHhccCccEEEEECCCCCEEEeCCC------cCcccccCCCc------cccH----HHHHHHhcCCcEEEE--
Confidence 334444444333 3478999999999875421 01112233322 2333 344444333222222
Q ss_pred EcccCCCCCEEEEEEEEEEeecCCCCEEEEEEEEEecchhHHHHHHHHHHHHHHHHHHhCCCCCCCCeEeecCCccEEeh
Q 002210 688 AFGPRETSGPVILVVNACCTQDTKENVIGVCFVGQDITGQKLVMDKYTRIQGDYVGIVSSPSALIPPIFMTDEDGRCLEW 767 (953)
Q Consensus 688 ~~~~~~dG~~~~v~v~~~pi~d~~g~v~gvv~v~~DITerk~~E~~L~~se~~~~~i~e~~~~li~~I~~~D~~G~i~~~ 767 (953)
. ....|.. +..-+.|+++ +|+++|++++..|+....+ . +.. . .. .++++|.+|.|+.-
T Consensus 162 ~--~~~tg~~--~i~~a~PV~~-~G~viGVv~v~i~l~~l~~---~-------~~~--~--~g---~~~l~D~~G~ii~~ 219 (305)
T 3e4o_A 162 M--GTVSKRP--GLYISRRVDG-PGGPLGVIVAKLEFDGVEA---D-------WQA--S--GK---PAYVTDRRGIVLIT 219 (305)
T ss_dssp E--CTTTCCE--EEEEEEEEEE-TTEEEEEEEEEECCHHHHH---H-------HHH--H--TS---CEEEECTTCBEEEE
T ss_pred E--ecCCCCE--EEEEEEEEcc-CCeEEEEEEEEEcHHHHHH---H-------Hhc--C--Cc---eEEEEcCCCeEEEe
Confidence 1 1123443 3456788887 6999999999888875322 1 111 1 22 58999999998755
Q ss_pred h
Q 002210 768 N 768 (953)
Q Consensus 768 N 768 (953)
+
T Consensus 220 ~ 220 (305)
T 3e4o_A 220 S 220 (305)
T ss_dssp S
T ss_pred C
Confidence 4
No 184
>3lif_A Putative diguanylate cyclase (ggdef) with PAS/PAC; PDC fold, signaling protein; HET: CIT; 2.70A {Rhodopseudomonas palustris}
Probab=58.10 E-value=1.5e+02 Score=29.47 Aligned_cols=121 Identities=12% Similarity=0.061 Sum_probs=65.4
Q ss_pred HHHHHHHHHHhcCc--cEEEEcCCCcEEecCHHHHHHhCCCcchhcCCCccccccCCcHHHHHHHHHHHhc--ccceE-E
Q 002210 609 ITNEMVRLIETAAV--PILAVDASGNVNGWNSKAAELTGLTVDQAIGTALVDLVAGDSVDVVKNMLSSAFL--EERNV-E 683 (953)
Q Consensus 609 ~~~~l~~lle~~~~--~I~~~D~dg~i~~~N~a~~~l~G~~~~eliG~~~~dl~~~~~~~~~~~~l~~~l~--~~~~~-e 683 (953)
....+..+....+. .++++|.+|+ +..+.. .. ..+. ...+++ .+..++. .+..+ .
T Consensus 56 ~~~~L~~~~~~~~~~~~i~i~d~~G~-~~~s~~------~~---~~~~------~~~~r~----~f~~a~~~~~~~~~is 115 (254)
T 3lif_A 56 FNERLRALADNLPQLSDVAILDADGQ-LTYASV------KP---VPAL------DNSDRS----YFRYHRANDDHTLLIT 115 (254)
T ss_dssp HHHHHHHHHHHCTTEEEEEEECTTSB-EEEESS------SS---EECC------BCTTSH----HHHHHHHCCCCCCEEE
T ss_pred HHHHHHHHHhcCCccceEEEECCCCC-EecCCC------CC---CCCC------CcccHH----HHHHHHhCCCCCeEEC
Confidence 34456666666665 6899999999 543211 00 0111 112333 3334442 22222 2
Q ss_pred EEEEEcccCCCCCEEEEEEEEEEeecCCCCEEEEEEEEEecchhHHHHHHHHHHHHHHHHHHhCCCCCCC-CeEeecCCc
Q 002210 684 IKLRAFGPRETSGPVILVVNACCTQDTKENVIGVCFVGQDITGQKLVMDKYTRIQGDYVGIVSSPSALIP-PIFMTDEDG 762 (953)
Q Consensus 684 ~~~~~~~~~~dG~~~~v~v~~~pi~d~~g~v~gvv~v~~DITerk~~E~~L~~se~~~~~i~e~~~~li~-~I~~~D~~G 762 (953)
-.+... ..|. ++..-+.|+++.+|++.|++++..++.. +..++......-. .++++|.+|
T Consensus 116 ~p~~~~---~~g~--~~i~~~~pi~~~~g~~~Gvl~~~i~l~~--------------l~~~~~~~~~~~~g~~~l~d~~G 176 (254)
T 3lif_A 116 GPIQSR---TSGV--WVFVVSRRLETTDGKFFGVVVATIESEY--------------FSTFYKTFDLGPGGSISLLHSDG 176 (254)
T ss_dssp EEEECT---TTCC--EEEEEEEEEECTTCCEEEEEEEEECHHH--------------HHHHHTTSCCCTTCEEEEEETTS
T ss_pred CceecC---CCCc--EEEEEEeeeeCCCCCEeEEEEEEECHHH--------------HHHHHHhcCcCCCcEEEEEeCCC
Confidence 222221 1233 4455778999889999999888777532 2223333221101 388999999
Q ss_pred cEEehh
Q 002210 763 RCLEWN 768 (953)
Q Consensus 763 ~i~~~N 768 (953)
.++.-.
T Consensus 177 ~ii~~~ 182 (254)
T 3lif_A 177 RLLIQW 182 (254)
T ss_dssp BEEEEE
T ss_pred cEEEEC
Confidence 998764
No 185
>3by8_A Sensor protein DCUS; histidine kinase sensor domain, inner membrane, membrane, phosphoprotein, transferase, transmembrane; 1.45A {Escherichia coli} SCOP: d.110.6.1 PDB: 1ojg_A
Probab=56.63 E-value=40 Score=31.04 Aligned_cols=28 Identities=18% Similarity=0.054 Sum_probs=21.6
Q ss_pred EEEEEEEEeecCCCCEEEEEEEEEeccH
Q 002210 839 EALLSANKRTNAEGKISGILCFLHVASP 866 (953)
Q Consensus 839 ~v~~s~~pi~d~~G~i~g~v~v~~DITe 866 (953)
.......|++|.+|+++|++++..++..
T Consensus 105 ~~~~~~~PV~~~~g~viGvv~vg~~~~~ 132 (142)
T 3by8_A 105 QALRVFTPIYDENHKQIGVVAIGLELSR 132 (142)
T ss_dssp CEEEEEEEEECTTSCEEEEEEEEEEHHH
T ss_pred EEEEEEEeEEcCCCCEEEEEEEeEEHHH
Confidence 3344455999888999999999888664
No 186
>3e98_A GAF domain of unknown function; structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PSI-2; HET: MSE; 2.43A {Pseudomonas aeruginosa}
Probab=55.67 E-value=37 Score=34.94 Aligned_cols=42 Identities=7% Similarity=0.102 Sum_probs=35.2
Q ss_pred HHHHHHhccCCCCCHHHHHHHHHHHHHhhhCCCeEEEEeecCCC
Q 002210 202 AKAISRLQSLPSGNISLLCDVLVNEVSDLTGYDRVMVYKFHEDE 245 (953)
Q Consensus 202 ~~~~~~l~~~~~~~~~~l~~~~v~~vr~~~g~DRVmiY~F~~d~ 245 (953)
.++..+|-. +.+++++++++.+.+++..+.|.|-+.-|++.+
T Consensus 106 ~~l~l~LL~--a~sl~~l~~~L~~~l~~~F~l~~v~L~L~~~~~ 147 (252)
T 3e98_A 106 RRLVLDLLD--ATSLEDVVSTVEDSLRHEFQVPYVSLILFSDSS 147 (252)
T ss_dssp HHHHHHHHH--CCSHHHHHHHHHHHHHHTSCCSEEEEEEECSSC
T ss_pred HHHHHHHhc--CCCHHHHHHHHHHHHHHHCCCCeEEEEEecCcc
Confidence 345555655 669999999999999999999999999998765
No 187
>1p0z_A Sensor kinase CITA; transferase; HET: FLC MO7; 1.60A {Klebsiella pneumoniae} SCOP: d.110.6.1 PDB: 2v9a_A 2j80_A*
Probab=55.38 E-value=1.1e+02 Score=27.52 Aligned_cols=77 Identities=25% Similarity=0.220 Sum_probs=43.9
Q ss_pred ccEEEEcCCCcEEecCHHHHHHhCCCcchhcCCCccccccCCcHHHHHHHHHHHhcccceEEEEEEEcccCCCCCEEEEE
Q 002210 622 VPILAVDASGNVNGWNSKAAELTGLTVDQAIGTALVDLVAGDSVDVVKNMLSSAFLEERNVEIKLRAFGPRETSGPVILV 701 (953)
Q Consensus 622 ~~I~~~D~dg~i~~~N~a~~~l~G~~~~eliG~~~~dl~~~~~~~~~~~~l~~~l~~~~~~e~~~~~~~~~~dG~~~~v~ 701 (953)
+.|++.|.+|..+.... .+.+|+++.. .+. +..++.+...+.. .. |......
T Consensus 51 ~~i~v~d~~G~~~a~~~----------~~~iG~~~~~---~~~-------~~~al~G~~~~~~-~~-------g~~g~~~ 102 (131)
T 1p0z_A 51 TYITVGDASGQRLYHVN----------PDEIGKSMEG---GDS-------DEALINAKSYVSV-RK-------GSLGSSL 102 (131)
T ss_dssp SEEEEEETTSBEEECSS----------GGGTTSBCCS---SCC-------HHHHHHCCCEEEE-EE-------ETTEEEE
T ss_pred CEEEEEcCCCcEEEecC----------hhhCCCcccC---CCc-------HHHHhCCCeEEEE-EE-------ccceeeE
Confidence 47889999998876532 2336765431 111 2233322222221 11 2112222
Q ss_pred EEEEEeecCCCCEEEEEEEEEecch
Q 002210 702 VNACCTQDTKENVIGVCFVGQDITG 726 (953)
Q Consensus 702 v~~~pi~d~~g~v~gvv~v~~DITe 726 (953)
....|+++.+|+++|++.+..++..
T Consensus 103 ~~~~PV~~~~g~viGvv~vg~~l~~ 127 (131)
T 1p0z_A 103 RGKSPIQDATGKVIGIVSVGYTIEQ 127 (131)
T ss_dssp EEEEEEECTTCCEEEEEEEEEEGGG
T ss_pred EEEEeEECCCCCEEEEEEEEEEhHH
Confidence 3456999878999999999888754
No 188
>1ixm_A SPO0B, protein (sporulation response regulatory protein); phosphotransferase, two component system; 2.60A {Bacillus subtilis} SCOP: d.123.1.1 PDB: 2ftk_A* 1f51_A
Probab=53.97 E-value=26 Score=34.47 Aligned_cols=47 Identities=13% Similarity=0.070 Sum_probs=35.7
Q ss_pred HHHHHHHHHHHhhhHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHHHHHHh
Q 002210 885 SLNKLEYIRREIRKPLNGIAFMQNLMGTSDLSEEQKQLLKTSVLCQEQLTN 935 (953)
Q Consensus 885 k~~fla~isHELrnPL~~I~g~~~LL~~~~l~e~~~~~l~~i~~~~~~L~~ 935 (953)
-.+.+...+||+.|-|..|.|+++|=+ -++.++|+..+....+....
T Consensus 21 ~~~~LR~qrHdf~NkLqvI~GLlql~~----ydea~~yI~~~~~~~q~~~~ 67 (192)
T 1ixm_A 21 LIHLLGHSRHDWMNKLQLIKGNLSLQK----YDRVFEMIEEMVIDAKHESK 67 (192)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHTTC----HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhHHHHHHHHHHHHHHHcCC----HHHHHHHHHHHHHHHHHHHH
Confidence 345678889999999999999999865 36778888777555544443
No 189
>3qp1_A CVIR transcriptional regulator; quorum sensing, agonist, antagonist, LUXR, acylated homoseri lactone, transcription factor; HET: HL6; 1.55A {Chromobacterium violaceum} PDB: 3qp2_A* 3qp4_A* 3qp8_A*
Probab=52.16 E-value=1.7e+02 Score=28.06 Aligned_cols=147 Identities=11% Similarity=0.003 Sum_probs=85.8
Q ss_pred HHHHHHHhccCCCCCHHHHHHHHHHHHHhhhCCCeEEEEeecCCCCc--eEEEeecCCCCCCccCCCCCCCCccHHHHHH
Q 002210 201 AAKAISRLQSLPSGNISLLCDVLVNEVSDLTGYDRVMVYKFHEDEHG--EVVAECRRPDLEPYLGFHYPATDIPQASRFL 278 (953)
Q Consensus 201 ~~~~~~~l~~~~~~~~~~l~~~~v~~vr~~~g~DRVmiY~F~~d~~G--~viaE~~~~~~~~~lg~~~pa~dip~~ar~l 278 (953)
+...+.+++. +.+.+++.+. +..+.+.+|||++++..-.....| +.+.. +--+..|+.+.+.
T Consensus 19 l~~~~~~l~~--a~s~~~l~~~-l~~~~~~~Gf~~~~y~~~~~~~~~~~~~~~~-------------~~~~nyP~~W~~~ 82 (182)
T 3qp1_A 19 LLEWIHMAGH--IETENELKAF-LDQVLSQAPSERLLLALGRLNNQNQIQRLER-------------VLNVSYPSDWLDQ 82 (182)
T ss_dssp HHHHHHHHTT--CCSHHHHHHH-HHHHHTTSSCSEEEEEEEEECTTSCEEEEEE-------------EEESSSCHHHHHH
T ss_pred HHHHHHHHHh--cCCHHHHHHH-HHHHHHhcCCCeEEEEeecCCCcccccchhh-------------hhhcCCCHHHHHH
Confidence 3567888888 5588888766 556778899999987543322222 11100 1123457899999
Q ss_pred HHhCCceEeecCCCCCceeeeCCCCCCccccCCccccCCChhHH---HHhhhcCCeeEEEEEEEEeCCcccccccccCCC
Q 002210 279 IMKNKVRMICDCLAPPVKVIQDKKLDQPLSLCGSTLRAPHGCHA---RYMENMGSIASLVMSVTINEAEDELDNDQEQGR 355 (953)
Q Consensus 279 y~~n~~r~i~D~~~~~~~l~~~~~~~~~ldl~~s~lr~~s~~h~---~yl~nmgv~asl~~~i~~~~~~~~~~~~~~~~~ 355 (953)
|..+..-.|. | ++.......|+.=+....+..++-.. +..+.+|++.-+++||.-. .+
T Consensus 83 Y~~~~y~~~D-----P--vv~~~~~~~p~~W~~~~~~~~~~~~~~~~~~a~~~Gl~~G~tvp~~~~------------~~ 143 (182)
T 3qp1_A 83 YMKENYAQHD-----P--ILRIHLGQGPVMWEERFNRAKGAEEKRFIAEATQNGMGSGITFSAASE------------RN 143 (182)
T ss_dssp HHHTTGGGTC-----G--GGGSCTTSCCEEHHHHHHTCCSHHHHHHHHHHHHTTCSSEEEEEEEET------------TT
T ss_pred HHHCCCcccC-----c--chHhhcCCCCEecCchhhcccChHHHHHHHHHHHcCCCceEEEEeecC------------CC
Confidence 9999974332 2 22211133444333222233333333 4567899999999999732 14
Q ss_pred ceeEEEeeecCCCCCCChhHHHHHHHHH
Q 002210 356 KLWGLVVCHHTSPRFVPFPLRYACEFLI 383 (953)
Q Consensus 356 ~LWGLi~~hh~~pr~~~~~~r~~~~~l~ 383 (953)
...|+++.-.... ..+...+...++++
T Consensus 144 g~~g~ls~a~~~~-~~~~~~~~~l~~la 170 (182)
T 3qp1_A 144 NIGSILSIAGREP-GRNAALVAMLNCLT 170 (182)
T ss_dssp TEEEEEEEESSTG-GGCHHHHHHHHHHH
T ss_pred CcEEEEEEecCCc-cCCHHHHHHHHHHH
Confidence 6889888765443 24444444444433
No 190
>3nhq_A Bacteriophytochrome; photoreceptor, PAS, signaling, signaling protei; HET: BLA; 2.55A {Pseudomonas aeruginosa} PDB: 3c2w_A* 3nop_C* 3not_C* 3nou_C* 3g6o_A* 3ibr_A*
Probab=48.35 E-value=7.7 Score=44.42 Aligned_cols=39 Identities=10% Similarity=-0.013 Sum_probs=33.8
Q ss_pred HHHHHHhccCCCCCHHHHHHHHHHHHHhhhCCCeEEEEeec
Q 002210 202 AKAISRLQSLPSGNISLLCDVLVNEVSDLTGYDRVMVYKFH 242 (953)
Q Consensus 202 ~~~~~~l~~~~~~~~~~l~~~~v~~vr~~~g~DRVmiY~F~ 242 (953)
.+++.+|.+ +.++.+++.+.+.++++++++|+|.||.++
T Consensus 323 ~~l~~~l~~--~~~~~~~l~~~~~~l~~ll~adg~al~~~~ 361 (505)
T 3nhq_A 323 LALARRARD--ADDLFGALAHPDDGIAALIPCDGALVMLGG 361 (505)
T ss_dssp HHHHHHHHH--HCCHHHHHHCTTTSHHHHTTCSEEEEEETT
T ss_pred HHHHHHHhh--cCCHHHHHHHhhHHHHHHhCCCeEEEEECC
Confidence 456667777 568999999999999999999999999886
No 191
>4dah_A Sporulation kinase D; alpha-beta-alpha structure, structural genomics, midwest CEN structural genomics (MCSG), PSI-biology, PAS-like fold; 2.03A {Bacillus subtilis} PDB: 4dbj_A 4dbi_A 4dak_A 3fos_A
Probab=48.22 E-value=37 Score=33.36 Aligned_cols=32 Identities=6% Similarity=0.001 Sum_probs=25.1
Q ss_pred cCCCEEEEEEEEEEeecCCCCEEEEEEEEEeccH
Q 002210 833 QQGKYVEALLSANKRTNAEGKISGILCFLHVASP 866 (953)
Q Consensus 833 kdG~~~~v~~s~~pi~d~~G~i~g~v~v~~DITe 866 (953)
..|+ ++.....|+++.+|++.|++++..++..
T Consensus 120 ~~g~--~~i~ia~pi~~~~g~~~Gvl~~~i~l~~ 151 (217)
T 4dah_A 120 ITGQ--PIFTICVPVLDSKRNVTDYLVAAIQIDY 151 (217)
T ss_dssp TTCS--EEEEEEEEEECTTSCEEEEEEEEEEHHH
T ss_pred CCCC--EEEEEEEEEECCCCCEEEEEEEEEcHHH
Confidence 3565 5667778999989999999988777653
No 192
>2q0o_A Probable transcriptional activator protein TRAR; helix-turn-helix, two-helix coiled coil; HET: LAE; 2.00A {Rhizobium SP}
Probab=42.58 E-value=94 Score=31.21 Aligned_cols=120 Identities=12% Similarity=0.050 Sum_probs=66.4
Q ss_pred HHhccCCCCC-HHHHHHHHHHHHHhhhCCCeEEEEeecCCCCceEEEeecCCCCCCccCCCCCCCCccHHHHHHHHhCCc
Q 002210 206 SRLQSLPSGN-ISLLCDVLVNEVSDLTGYDRVMVYKFHEDEHGEVVAECRRPDLEPYLGFHYPATDIPQASRFLIMKNKV 284 (953)
Q Consensus 206 ~~l~~~~~~~-~~~l~~~~v~~vr~~~g~DRVmiY~F~~d~~G~viaE~~~~~~~~~lg~~~pa~dip~~ar~ly~~n~~ 284 (953)
.++.. +.+ .+++.+.+ +.+.+.+|||++.++.+.. + ..++ .+..|....+.|..+..
T Consensus 11 ~~l~~--a~~~~~~l~~~l-~~~~~~~gf~~~~y~~~~~------------~--~~~~-----~~~~p~~w~~~Y~~~~y 68 (236)
T 2q0o_A 11 IDMLE--AAQDGHMIKIAL-RSFAHSCGYDRFAYLQKDG------------T--QVRT-----FHSYPGPWESIYLGSDY 68 (236)
T ss_dssp HHHHH--HCCSHHHHHHHH-HHHHHHHTCCEEEEEEEET------------T--EEEE-----EECSCHHHHHHHHHTTG
T ss_pred HHHHH--ccCcHHHHHHHH-HHHHHHhCCCeEEEEecCC------------C--ceEE-----EeCCCHHHHHHHHHCCC
Confidence 55555 336 77777775 5555669999999875210 1 1111 24457888999988775
Q ss_pred eEeecCCCCCceeeeCCCCCCccccCCccccC-CC---hhHHHHhhhcCCeeEEEEEEEEeCCcccccccccCCCceeEE
Q 002210 285 RMICDCLAPPVKVIQDKKLDQPLSLCGSTLRA-PH---GCHARYMENMGSIASLVMSVTINEAEDELDNDQEQGRKLWGL 360 (953)
Q Consensus 285 r~i~D~~~~~~~l~~~~~~~~~ldl~~s~lr~-~s---~~h~~yl~nmgv~asl~~~i~~~~~~~~~~~~~~~~~~LWGL 360 (953)
..+ | |+-.. ......|+.-+....+. .+ +...++.+.+|+..-+++|+.-. +..+|+
T Consensus 69 ~~~-D----Pv~~~-~~~~~~p~~w~~~~~~~~~~~~~~~~~~~a~~~gl~~G~~~p~~~~-------------~~~~g~ 129 (236)
T 2q0o_A 69 FNI-D----PVLAE-AKRRRDVFFWTADAWPARGSSPLRRFRDEAISHGIRCGVTIPVEGS-------------YGSAMM 129 (236)
T ss_dssp GGT-C----HHHHH-HHHCCSCEEEESTTSCCSSCCHHHHHHHHHHHTTCCEEEEEEEECG-------------GGCEEE
T ss_pred ccc-C----HHHHH-HhCCCCCEEecCcccccccCHHHHHHHHHHHHcCCCceEEEEEEcC-------------CCCeEE
Confidence 322 1 21100 00111222222111111 11 23345677999999999999754 557788
Q ss_pred EeeecC
Q 002210 361 VVCHHT 366 (953)
Q Consensus 361 i~~hh~ 366 (953)
+.....
T Consensus 130 ls~~~~ 135 (236)
T 2q0o_A 130 LTFASP 135 (236)
T ss_dssp EEEEES
T ss_pred EEEecC
Confidence 766543
No 193
>3by8_A Sensor protein DCUS; histidine kinase sensor domain, inner membrane, membrane, phosphoprotein, transferase, transmembrane; 1.45A {Escherichia coli} SCOP: d.110.6.1 PDB: 1ojg_A
Probab=39.86 E-value=94 Score=28.43 Aligned_cols=77 Identities=21% Similarity=0.178 Sum_probs=44.0
Q ss_pred ccEEEEcCCCcEEecCHHHHHHhCCCcchhcCCCccccccCCcHHHHHHHHHHHhcccceEEEEEEEcccCCCCCEEEEE
Q 002210 622 VPILAVDASGNVNGWNSKAAELTGLTVDQAIGTALVDLVAGDSVDVVKNMLSSAFLEERNVEIKLRAFGPRETSGPVILV 701 (953)
Q Consensus 622 ~~I~~~D~dg~i~~~N~a~~~l~G~~~~eliG~~~~dl~~~~~~~~~~~~l~~~l~~~~~~e~~~~~~~~~~dG~~~~v~ 701 (953)
+.|++.|.+|..+.... .+.+|+++.. + .+..++.+...+.. .. ..++.. +
T Consensus 57 ~~i~v~d~~G~~~~~~~----------~~~iG~~~~~---~--------~~~~al~G~~~~~~---~~---~~~g~~-~- 107 (142)
T 3by8_A 57 LFIVVTDMQSLRYSHPE----------AQRIGQPFKG---D--------DILKALNGEENVAI---NR---GFLAQA-L- 107 (142)
T ss_dssp SEEEEEETTCBBSCCSS----------GGGTTSBCCC---G--------GGTGGGGTCCEEEE---EC---SSSSCE-E-
T ss_pred cEEEEECCCCcEEECCC----------hHHCCCcCCC---C--------CHHHHhCCCeEEEE---ec---CccEEE-E-
Confidence 47889999997766432 3347765541 1 12233422222211 11 112222 2
Q ss_pred EEEEEeecCCCCEEEEEEEEEecchh
Q 002210 702 VNACCTQDTKENVIGVCFVGQDITGQ 727 (953)
Q Consensus 702 v~~~pi~d~~g~v~gvv~v~~DITer 727 (953)
....|+++.+|+++|++.+..++...
T Consensus 108 ~~~~PV~~~~g~viGvv~vg~~~~~~ 133 (142)
T 3by8_A 108 RVFTPIYDENHKQIGVVAIGLELSRV 133 (142)
T ss_dssp EEEEEEECTTSCEEEEEEEEEEHHHH
T ss_pred EEEEeEEcCCCCEEEEEEEeEEHHHH
Confidence 24459998789999999998887654
No 194
>4e04_A Bacteriophytochrome (light-regulated signal trans histidine kinase), PHYB1; bacteriophytochrome chromophore binding domain; HET: LBV; 1.79A {Rhodopseudomonas palustris}
Probab=39.34 E-value=14 Score=39.67 Aligned_cols=47 Identities=23% Similarity=0.367 Sum_probs=39.0
Q ss_pred cEEEEcCCCcEEecCHHHHHHhCCCcchhcCCCccccccCCcHHHHH
Q 002210 623 PILAVDASGNVNGWNSKAAELTGLTVDQAIGTALVDLVAGDSVDVVK 669 (953)
Q Consensus 623 ~I~~~D~dg~i~~~N~a~~~l~G~~~~eliG~~~~dl~~~~~~~~~~ 669 (953)
..+++|.+++|+.++..+.+++|.+.++++|+++.+++.+.....+.
T Consensus 31 ~Ll~~~~~~~I~~~S~N~~~~lg~~~~~~lG~~l~~ll~~~~~~~l~ 77 (327)
T 4e04_A 31 LLLALAADMTIVAGSDNLPELTGLAIGALIGRSAADVFDSETHNRLT 77 (327)
T ss_dssp EEEEECTTCBEEEEETTHHHHHSCCHHHHTTCBHHHHBCHHHHHHHH
T ss_pred EEEEEcCCCeEEEEcccHHHHhCCChHhhcCCCHHHHcCHHHHHHHH
Confidence 34667888999999999999999999999999999988765544433
No 195
>1l3l_A Transcriptional activator protein TRAR; helix-turn-helix DNA binding motif, alpha/beta/alpha sandwich; HET: LAE; 1.66A {Agrobacterium tumefaciens} SCOP: a.4.6.2 d.110.5.1 PDB: 1h0m_A*
Probab=32.12 E-value=1.6e+02 Score=29.44 Aligned_cols=119 Identities=10% Similarity=0.183 Sum_probs=67.7
Q ss_pred HHhccCCCCC-HHHHHHHHHHHHHhhhCCCeEEEEeecCCCCceEEEeecCCCCCCccCCCCCCCCccHHHHHHHHhCCc
Q 002210 206 SRLQSLPSGN-ISLLCDVLVNEVSDLTGYDRVMVYKFHEDEHGEVVAECRRPDLEPYLGFHYPATDIPQASRFLIMKNKV 284 (953)
Q Consensus 206 ~~l~~~~~~~-~~~l~~~~v~~vr~~~g~DRVmiY~F~~d~~G~viaE~~~~~~~~~lg~~~pa~dip~~ar~ly~~n~~ 284 (953)
.++.. +.+ .+++.+. ++.+.+.+|||++.++.+.. +. . +-.+..|....+.|..+..
T Consensus 9 ~~l~~--a~~~~~~l~~~-l~~~~~~~gf~~~~y~~~~~------------~~--~-----~~~~~~p~~w~~~Y~~~~y 66 (234)
T 1l3l_A 9 TDLAA--IEGDECILKTG-LADIADHFGFTGYAYLHIQH------------RH--I-----TAVTNYHRQWQSTYFDKKF 66 (234)
T ss_dssp HHHTT--CCSCHHHHHHH-HHHHHHHTTCSEEEEEEEET------------TE--E-----EEEECSCHHHHHHHHHTTG
T ss_pred HHHHH--ccCcHHHHHHH-HHHHHHHcCCCeEEEEecCC------------CC--e-----EEEcCCCHHHHHHHHHCCC
Confidence 56766 446 7777765 44666899999999883111 00 1 1134567889999988775
Q ss_pred eEeecCCCCCceeee-CCCCCCccccCCccccC-C---ChhHHHHhhhcCCeeEEEEEEEEeCCcccccccccCCCceeE
Q 002210 285 RMICDCLAPPVKVIQ-DKKLDQPLSLCGSTLRA-P---HGCHARYMENMGSIASLVMSVTINEAEDELDNDQEQGRKLWG 359 (953)
Q Consensus 285 r~i~D~~~~~~~l~~-~~~~~~~ldl~~s~lr~-~---s~~h~~yl~nmgv~asl~~~i~~~~~~~~~~~~~~~~~~LWG 359 (953)
..+ | | ++. ......|+.-+...... . .+...++.+.+|+..-+++|+.-. +..+|
T Consensus 67 ~~~-D----P--v~~~~~~~~~p~~w~~~~~~~~~~~~~~~~~~~a~~~gl~~G~~~p~~~~-------------~~~~g 126 (234)
T 1l3l_A 67 EAL-D----P--VVKRARSRKHIFTWSGEHERPTLSKDERAFYDHASDFGIRSGITIPIKTA-------------NGFMS 126 (234)
T ss_dssp GGT-C----H--HHHHHHHCCSCEEEEHHHHTTTCCHHHHHHHHHHHTTTCSEEEEEEEECG-------------GGCEE
T ss_pred ccc-C----c--HHHHhhCCCCCeeeCccccccccchHHHHHHHHHHHcCCCccEEEEEecC-------------CCCEE
Confidence 322 2 2 221 00111233222221111 1 123344567999999999999754 56788
Q ss_pred EEeeecC
Q 002210 360 LVVCHHT 366 (953)
Q Consensus 360 Li~~hh~ 366 (953)
++..-..
T Consensus 127 ~ls~~~~ 133 (234)
T 1l3l_A 127 MFTMASD 133 (234)
T ss_dssp EEEEEES
T ss_pred EEEEecC
Confidence 8765443
No 196
>2avx_A Regulatory protein SDIA; homoserine lactone, quorum sensing, transcription; HET: HTF; NMR {Escherichia coli}
Probab=31.17 E-value=3.3e+02 Score=25.37 Aligned_cols=128 Identities=13% Similarity=0.042 Sum_probs=76.1
Q ss_pred HHHHHHhccCCCCCHHHHHHHHHHHHHhhhCCCeEEEEeecCCCCceEEEeecCCCCCCccCCCCCCCCccHHHHHHHHh
Q 002210 202 AKAISRLQSLPSGNISLLCDVLVNEVSDLTGYDRVMVYKFHEDEHGEVVAECRRPDLEPYLGFHYPATDIPQASRFLIMK 281 (953)
Q Consensus 202 ~~~~~~l~~~~~~~~~~l~~~~v~~vr~~~g~DRVmiY~F~~d~~G~viaE~~~~~~~~~lg~~~pa~dip~~ar~ly~~ 281 (953)
...+..+.. +.+.+++.+.+. .+.+.+|||++++.-..+...+ .| ..+=-+..|+...+.|..
T Consensus 11 ~~~l~~l~~--a~~~~~l~~~l~-~~~~~lGf~~~~y~~~~~~~~~-----------~~---~~~~~~~yp~~W~~~Y~~ 73 (171)
T 2avx_A 11 RTMLLRFQR--METAEEVYHEIE-LQAQQLEYDYYSLCVRHPVPFT-----------RP---KVAFYTNYPEAWVSYYQA 73 (171)
T ss_dssp HHHHHHHHH--TCSHHHHHHHHH-HHHHTTTCSCEEEEEEECCTTS-----------CC---EEEEEECCCHHHHHHHHH
T ss_pred HHHHHHHHh--CCCHHHHHHHHH-HHHHHcCCCeEEEEeecCCCCC-----------CC---cEehhcCCCHHHHHHHHH
Confidence 345677777 458888886644 5557889999987654322111 01 011134568999999999
Q ss_pred CCceEeecCCCCCceeeeC-CCCCCccccCCccccCCChhHHHHhhhcCCeeEEEEEEEEeCCcccccccccCCCceeEE
Q 002210 282 NKVRMICDCLAPPVKVIQD-KKLDQPLSLCGSTLRAPHGCHARYMENMGSIASLVMSVTINEAEDELDNDQEQGRKLWGL 360 (953)
Q Consensus 282 n~~r~i~D~~~~~~~l~~~-~~~~~~ldl~~s~lr~~s~~h~~yl~nmgv~asl~~~i~~~~~~~~~~~~~~~~~~LWGL 360 (953)
+..-.|. | ++.. .....|+.=+.... .-.+--.+..+.+|++.-+++||.-. +..+|+
T Consensus 74 ~~y~~~D-----P--vv~~~~~~~~p~~W~~~~~-~~~~~~~~~a~~~Gl~~G~t~p~~~~-------------~g~~~~ 132 (171)
T 2avx_A 74 KNFLAID-----P--VLNPENFSQGHLMWNDDLF-SEAQPLWEAARAHGLRRGVTQYLMLP-------------ERALGF 132 (171)
T ss_dssp TTGGGTC-----G--GGCTTTCTTSEEECCTTTT-SSCHHHHHHHHHHTCCEEEEEEECCT-------------TCCEEE
T ss_pred CCCeEeC-----h--hhhhhcCCCCCEecCchhc-cchHHHHHHHHHcCCCcEEEEEeecC-------------CCCEEE
Confidence 9864332 2 2221 12233443322221 11234456779999999999999632 567888
Q ss_pred EeeecCC
Q 002210 361 VVCHHTS 367 (953)
Q Consensus 361 i~~hh~~ 367 (953)
++.-...
T Consensus 133 ls~~~~~ 139 (171)
T 2avx_A 133 LSFSRCS 139 (171)
T ss_dssp EEEEESC
T ss_pred EEEecCC
Confidence 8765543
No 197
>3s7o_A Bacteriophytochrome; biliverdin, PAS, GAF, photoreceptor, fluorescent protein; HET: LBV GOL; 1.24A {Deinococcus radiodurans} PDB: 3s7n_A* 3s7p_A* 3s7q_A* 2o9c_A* 2o9b_A* 1ztu_A*
Probab=30.91 E-value=25 Score=37.90 Aligned_cols=45 Identities=24% Similarity=0.301 Sum_probs=37.9
Q ss_pred EEEEcC-CCcEEecCHHHHHHhCCCcchhcCCCccccccCCcHHHHH
Q 002210 624 ILAVDA-SGNVNGWNSKAAELTGLTVDQAIGTALVDLVAGDSVDVVK 669 (953)
Q Consensus 624 I~~~D~-dg~i~~~N~a~~~l~G~~~~eliG~~~~dl~~~~~~~~~~ 669 (953)
.+++|. +++|+.++..+.+++|.++++++|+++.+++.+ ....+.
T Consensus 55 LL~l~~~~~~I~~~S~N~~~~lg~~~~~llG~~l~~ll~~-~~~~l~ 100 (343)
T 3s7o_A 55 LLTADGHSGEVLQMSLNAATFLGQEPTVLRGQTLAALLPE-QWPALQ 100 (343)
T ss_dssp EEEEETTTCBEEEEETTHHHHHSSCHHHHTTCBHHHHSTT-THHHHH
T ss_pred EEEEECCCCEEEEEcccHHHHhCcChHHHcCCCHHHHHhH-HHHHHH
Confidence 455665 899999999999999999999999999999887 655443
No 198
>3by9_A Sensor protein; histidine kinase sensor domain, phosphoprotein, transferase, two-component regulatory system; 1.70A {Vibrio cholerae}
Probab=29.52 E-value=4.1e+02 Score=26.04 Aligned_cols=107 Identities=12% Similarity=0.025 Sum_probs=57.4
Q ss_pred ccEEEEcCCCcEEecCHHHHHHhCCCcchhcCCCccccccCCcHHHHHHHHHHHhcccceEEEEEEEcccCCCCCEEEEE
Q 002210 622 VPILAVDASGNVNGWNSKAAELTGLTVDQAIGTALVDLVAGDSVDVVKNMLSSAFLEERNVEIKLRAFGPRETSGPVILV 701 (953)
Q Consensus 622 ~~I~~~D~dg~i~~~N~a~~~l~G~~~~eliG~~~~dl~~~~~~~~~~~~l~~~l~~~~~~e~~~~~~~~~~dG~~~~v~ 701 (953)
..+++.|.+|.++..+.. . ......|..+ ..++ .+..++........ +.. ...|. ++.
T Consensus 73 ~~i~i~d~~G~~~~~~~~-----~-~~~~~~~~~~------~~r~----~~~~a~~~~~~~~~-~~~---~~~g~--~~i 130 (260)
T 3by9_A 73 ADTYLIDRFGNTIASSNW-----N-LDRSFIGRNF------AWRP----YFYLSIAGQKSQYF-ALG---STSGQ--RGY 130 (260)
T ss_dssp SEEEEEETTSBEEEETTT-----T-STTCCTTCBC------TTSH----HHHHHTTTSCEEEE-EEC---TTTCC--EEE
T ss_pred ceEEEECCCCCEEEecCC-----C-CCCCccCCcc------ccCH----HHHHHHhCCCceEE-EEe---cCCCC--EEE
Confidence 358889999998875421 0 0111122211 1222 34455533322222 211 12344 344
Q ss_pred EEEEEeecCCCCEEEEEEEEEecchhHHHHHHHHHHHHHHHHHHhCCCCCCCCeEeecCCccEEehh
Q 002210 702 VNACCTQDTKENVIGVCFVGQDITGQKLVMDKYTRIQGDYVGIVSSPSALIPPIFMTDEDGRCLEWN 768 (953)
Q Consensus 702 v~~~pi~d~~g~v~gvv~v~~DITerk~~E~~L~~se~~~~~i~e~~~~li~~I~~~D~~G~i~~~N 768 (953)
.-+.|++ .+|+++|++++..++... ..++..... .++++|.+|.++.-+
T Consensus 131 ~~~~pi~-~~g~~~Gvv~~~i~l~~l--------------~~~~~~~~g---~~~l~d~~G~ii~~~ 179 (260)
T 3by9_A 131 YYAYPVI-YAAEILGVIVVKMDLSAI--------------EQGWQNKSS---YFVATDDHQVVFMSS 179 (260)
T ss_dssp EEEEEEE-ETTEEEEEEEEEECSHHH--------------HHTCCCSSC---EEEEECTTCBEEEES
T ss_pred EEEEEEc-cCCeEEEEEEEEEeHHHH--------------HHHHhcCCC---cEEEECCCCeEEEcC
Confidence 4677888 589999999887776532 112222222 488899999998654
No 199
>4eu0_A PELD; C-DI-GMP, signaling protein; HET: C2E; 1.70A {Pseudomonas aeruginosa} PDB: 4euv_A* 4etz_A* 4etx_A 4dmz_A 4dn0_A*
Probab=25.34 E-value=6e+02 Score=26.51 Aligned_cols=124 Identities=10% Similarity=0.055 Sum_probs=73.2
Q ss_pred HHHHHHHHHHHHHhhhCCCeEEEEeecCCCC--ceEEEeecCCCCCCccCCCCCCCCccHHHHHHHHhCCceEeecCCCC
Q 002210 216 ISLLCDVLVNEVSDLTGYDRVMVYKFHEDEH--GEVVAECRRPDLEPYLGFHYPATDIPQASRFLIMKNKVRMICDCLAP 293 (953)
Q Consensus 216 ~~~l~~~~v~~vr~~~g~DRVmiY~F~~d~~--G~viaE~~~~~~~~~lg~~~pa~dip~~ar~ly~~n~~r~i~D~~~~ 293 (953)
+..+.+...+-+.+.-++.+.-+|+.+.+.+ -+.+| -+|--+|-+-==+=.|.....+....|.+..-.
T Consensus 24 l~~~a~~lL~llaq~~~l~~Aaly~~~~~~~~~~~p~A---------~iG~~~~l~~~DpLVr~alet~~l~~v~~~~~~ 94 (298)
T 4eu0_A 24 LDALAETVLALLAQYGSLRIAGLYRVRYDRTPEPQPLA---------TLGEMPALDADDLLVRTCLERGELVSVRQELLE 94 (298)
T ss_dssp HHHTHHHHHHHHHHHHTCSEEEEEEBCTTSCBCSSCSE---------EESSCCCCCSCCHHHHHHHHHTSCEECCC----
T ss_pred ChHHHHHHHHHHHHhcCeeEEEEEEEECCcccCCceee---------ecCCCCCCCCCCHHHHHHHHhCCceeechhhhh
Confidence 6777888888899999999999999866542 22232 123222211112234444444544444441100
Q ss_pred CceeeeCCCCCCccccCCccccCCChhHHHHhhhc-CCeeEEEEEEE-EeCCcccccccccCCCceeEEEeeecCCCCCC
Q 002210 294 PVKVIQDKKLDQPLSLCGSTLRAPHGCHARYMENM-GSIASLVMSVT-INEAEDELDNDQEQGRKLWGLVVCHHTSPRFV 371 (953)
Q Consensus 294 ~~~l~~~~~~~~~ldl~~s~lr~~s~~h~~yl~nm-gv~asl~~~i~-~~~~~~~~~~~~~~~~~LWGLi~~hh~~pr~~ 371 (953)
=.+.+ +.+.-+++|++ .+ |++||+|+.+..-+...
T Consensus 95 ------------------------------~~~~~~~sryL~viPLld~~-------------g~i~Gvl~V~~mpF~a~ 131 (298)
T 4eu0_A 95 ------------------------------RGEQRAHSAAAVCVPLVDTD-------------GRILALLAVEQMPFFVF 131 (298)
T ss_dssp ---------------------------------------CCEEEEEECTT-------------SCEEEEEEEEECCGGGC
T ss_pred ------------------------------ccccccccceEEEEEeecCC-------------CcEEEEEEEecCCcccc
Confidence 00011 34666788987 33 99999999999888778
Q ss_pred ChhHHHHHHHHHHHHHHhhH
Q 002210 372 PFPLRYACEFLIQVFGVQVN 391 (953)
Q Consensus 372 ~~~~r~~~~~l~~~~~~~l~ 391 (953)
....-.....|+..++..+.
T Consensus 132 ~~~~LqlL~VL~g~~ad~i~ 151 (298)
T 4eu0_A 132 NERTFSLLAILAGHIADLLQ 151 (298)
T ss_dssp SHHHHHHHHHHHHHHHHHHG
T ss_pred CHhHHHHHHHHHHHHHHHHH
Confidence 77766666666666666554
No 200
>3e4o_A C4-dicarboxylate transport sensor protein DCTB; PAS domain, N-TERM helical dimerization domain, transferase; 2.30A {Sinorhizobium meliloti} PDB: 3e4p_A 3e4q_A 2zbb_A
Probab=24.14 E-value=2.4e+02 Score=29.50 Aligned_cols=31 Identities=10% Similarity=0.069 Sum_probs=22.8
Q ss_pred cCCCEEEEEEEEEEeecCCCCEEEEEEEEEeccH
Q 002210 833 QQGKYVEALLSANKRTNAEGKISGILCFLHVASP 866 (953)
Q Consensus 833 kdG~~~~v~~s~~pi~d~~G~i~g~v~v~~DITe 866 (953)
..|+ ++...+.|+++ +|+++|++++..|+..
T Consensus 165 ~tg~--~~i~~a~PV~~-~G~viGVv~v~i~l~~ 195 (305)
T 3e4o_A 165 VSKR--PGLYISRRVDG-PGGPLGVIVAKLEFDG 195 (305)
T ss_dssp TTCC--EEEEEEEEEEE-TTEEEEEEEEEECCHH
T ss_pred CCCC--EEEEEEEEEcc-CCeEEEEEEEEEcHHH
Confidence 3444 44556778886 5999999999888774
No 201
>2hje_A Autoinducer 2 sensor kinase/phosphatase LUXQ; PER/ARNT/simple-minded (PAS) fold, autoinducer-2 (AI-2), quorum sensing, histidine sensor kinase; 1.70A {Vibrio harveyi} SCOP: d.110.6.3 PDB: 2hj9_C 1zhh_B*
Probab=20.27 E-value=6.4e+02 Score=24.98 Aligned_cols=93 Identities=15% Similarity=0.220 Sum_probs=60.7
Q ss_pred HHhcCccEEEEcCCCcEEecCHHHHHHhCCCcchhcCCCccccccCCcHHHHHHHHHHHh-cccceEEEEEEEcccCCCC
Q 002210 617 IETAAVPILAVDASGNVNGWNSKAAELTGLTVDQAIGTALVDLVAGDSVDVVKNMLSSAF-LEERNVEIKLRAFGPRETS 695 (953)
Q Consensus 617 le~~~~~I~~~D~dg~i~~~N~a~~~l~G~~~~eliG~~~~dl~~~~~~~~~~~~l~~~l-~~~~~~e~~~~~~~~~~dG 695 (953)
.+++|+--++.+.+|.+ |-.+-...+|++... +....+++. ...|.+ ..... .+
T Consensus 58 p~~~pDfRFI~~~~~~~--WdDgNa~FyGi~~~~-----------------L~~L~~~v~~~~~Wh~-~~~~s-----~~ 112 (221)
T 2hje_A 58 PSHTPEFRFLTDHKGII--WDDGNAHFYGVNDLI-----------------LDSLANRVSFSNNWYY-INVMT-----SI 112 (221)
T ss_dssp GGGCCSEEEEECSSSEE--EECSGGGGGTCCHHH-----------------HHHHHHHCCSSSSCEE-EEEEE-----TT
T ss_pred cCCCCcEEEEEeCCceE--EECCCccccccCHHH-----------------HHHHHhhhcccCceEE-EEecc-----CC
Confidence 36788888888888754 445555677765543 333444444 333333 22333 48
Q ss_pred CEEEEEEEEEEeec-CCCCEEEEEEEEEecchhHHHHHHH
Q 002210 696 GPVILVVNACCTQD-TKENVIGVCFVGQDITGQKLVMDKY 734 (953)
Q Consensus 696 ~~~~v~v~~~pi~d-~~g~v~gvv~v~~DITerk~~E~~L 734 (953)
+.+++.++..|+.+ ..|+++|...++.-.-..-..-+++
T Consensus 113 g~~~lLvRR~pIi~~~tGeVlG~Ly~gvVLnnNfslve~l 152 (221)
T 2hje_A 113 GSRHMLVRRVPILDPSTGEVLGFSFNAVVLDNNFALMEKL 152 (221)
T ss_dssp EEEEEEEEEEEEEETTTTEEEEEEEEEEECTTCHHHHHHH
T ss_pred CceEEEEEccceecCCCCcEEEEEEEEEEecCcHHHHHHH
Confidence 89999999999987 4699999888777776665544443
No 202
>4ew7_A Conjugative transfer: regulation; alpha-beta-alpha structure, structural genomics, midwest CEN structural genomics (MCSG), PSI-biology; 1.67A {Salmonella enterica subsp}
Probab=20.12 E-value=4.2e+02 Score=22.86 Aligned_cols=35 Identities=11% Similarity=0.192 Sum_probs=28.9
Q ss_pred HHHHHHhCCCCCCCCeEeecCCccEEehhHHHHHHhCC
Q 002210 740 DYVGIVSSPSALIPPIFMTDEDGRCLEWNDGMEKLSGL 777 (953)
Q Consensus 740 ~~~~i~e~~~~li~~I~~~D~~G~i~~~N~a~~~l~G~ 777 (953)
..+.+..++|- ++++-+.+.+|+|.|.+|.++|-.
T Consensus 21 ~iq~iY~nSPV---pVCVRNq~RkilYaN~aF~elF~K 55 (127)
T 4ew7_A 21 SIQDIYKNSPV---PVCVRNQSRKIIYANGAFIELFSK 55 (127)
T ss_dssp HHHHHHTTCSS---CEEEECTTSCEEEECHHHHHHTTS
T ss_pred hHHhhhcCCCc---cEEEecccceEEEecchHHHHhhc
Confidence 34566677765 899999999999999999999743
No 203
>3lid_A Putative sensory BOX/ggdef family protein; PDC fold, signaling protein; 1.76A {Vibrio parahaemolyticus} PDB: 3lie_A 2p7j_A*
Probab=20.08 E-value=2.2e+02 Score=29.60 Aligned_cols=136 Identities=14% Similarity=-0.012 Sum_probs=67.1
Q ss_pred HHHHHHHHHHHHHhcCc--cEEEEcCCCcEE-ecCHHHHHHhCCCcchhcCCCccccccCCcHHHHHHHHHHHhcccceE
Q 002210 606 LRIITNEMVRLIETAAV--PILAVDASGNVN-GWNSKAAELTGLTVDQAIGTALVDLVAGDSVDVVKNMLSSAFLEERNV 682 (953)
Q Consensus 606 L~~~~~~l~~lle~~~~--~I~~~D~dg~i~-~~N~a~~~l~G~~~~eliG~~~~dl~~~~~~~~~~~~l~~~l~~~~~~ 682 (953)
....+..|..++++.+. .|.++|.+|+.+ .+|......+-.+.. .+....+++.+...+.. ..+..+
T Consensus 62 ~~~l~~~~~~~~~~~~~~~~i~lid~~G~~i~~~~~~~~~~~~~p~~--------~l~n~~~R~yf~~a~~~--~~~~~~ 131 (295)
T 3lid_A 62 LTILENMWSSVARNQKLYKQIRFLDTSGTEKVRIKYDFKTSIAGPSL--------ILRDKSAREYFKYAQSL--DNEQIS 131 (295)
T ss_dssp HHHHHHHHHHHHHHHCCEEEEEEEETTSBEEEEEEEETTTTEEEECS--------CCCBCTTSHHHHHHHHS--CTTCCE
T ss_pred HHHHHHHHHHHHhcCccccEEEEECCCCCEEEEEEccCCceeEcCcc--------ccccchhhHHHHHHhcC--CCCcEE
Confidence 44556667777776554 588999999854 344321111100011 11122334433333221 222222
Q ss_pred EEEEEEcccCCCC----CEEEEEEEEEEeecCCCCEEEEEEEEEecchhHHHHHHHHHHHHHHHHHHhCCCCCCCCeEee
Q 002210 683 EIKLRAFGPRETS----GPVILVVNACCTQDTKENVIGVCFVGQDITGQKLVMDKYTRIQGDYVGIVSSPSALIPPIFMT 758 (953)
Q Consensus 683 e~~~~~~~~~~dG----~~~~v~v~~~pi~d~~g~v~gvv~v~~DITerk~~E~~L~~se~~~~~i~e~~~~li~~I~~~ 758 (953)
...+... ..+| ...++..-+.|+. .+|+++|++++-.|+... ...+. ..... -..++++
T Consensus 132 ~s~~~~~--~~~g~~~~~~~p~i~~a~pV~-~~g~~~GVlv~~i~l~~l----------~~~~~---~~~~~-~~~~~l~ 194 (295)
T 3lid_A 132 AWGIELE--RDKGELVYPLSPSLRILMPIS-VNDVRQGYLVLNVDIEYL----------SSLLN---YSPVR-DFHIELV 194 (295)
T ss_dssp ECCCEEC--EETTEECSSCCEEEEEEEEEE-ETTEEEEEEEEEEEHHHH----------HHHHS---EETTT-TEECEEE
T ss_pred EeCceec--ccCCcccCCCCCEEEEEEEEc-cCCeEEEEEEEEecHHHH----------HHHHh---hcccC-CCcEEEE
Confidence 2211110 0012 1234555678887 589999999887776442 11221 11111 0148999
Q ss_pred cCCccEEehh
Q 002210 759 DEDGRCLEWN 768 (953)
Q Consensus 759 D~~G~i~~~N 768 (953)
|.+|.++.-+
T Consensus 195 d~~G~~l~~~ 204 (295)
T 3lid_A 195 KHKGFYIASP 204 (295)
T ss_dssp ETTSBEEECS
T ss_pred cCCCCEEecC
Confidence 9999988654
Done!