BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 002211
(953 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3KG2|A Chain A, Ampa Subtype Ionotropic Glutamate Receptor In Complex With
Competitive Antagonist Zk 200775
pdb|3KG2|B Chain B, Ampa Subtype Ionotropic Glutamate Receptor In Complex With
Competitive Antagonist Zk 200775
pdb|3KG2|C Chain C, Ampa Subtype Ionotropic Glutamate Receptor In Complex With
Competitive Antagonist Zk 200775
pdb|3KG2|D Chain D, Ampa Subtype Ionotropic Glutamate Receptor In Complex With
Competitive Antagonist Zk 200775
Length = 823
Score = 93.6 bits (231), Expect = 5e-19, Method: Compositional matrix adjust.
Identities = 142/723 (19%), Positives = 265/723 (36%), Gaps = 109/723 (15%)
Query: 156 YPFFVQTAPNDLYLMSAIAEMVSYFGWGEVIAIFNDDDQGRNGVTALGDKLAEIRCKISY 215
+PF +Q P+ L A+ ++ Y+ W + A D D+G + + A+ D AE + +++
Sbjct: 98 HPFVIQMRPD---LKGALLSLIEYYQW-DKFAYLYDSDRGLSTLQAVLDSAAEKKWQVTA 153
Query: 216 KSALPPDQSVTETDVRNELVKVRMMEARVIVVHGYSRTGLMVFDVAQRLGMMDSGYVWIA 275
+ + + R+ + + + R +++ + D +G GY +I
Sbjct: 154 INVGNINNDKKDETYRSLFQDLELKKERRVILDCERDKVNDIVDQVITIGKHVKGYHYII 213
Query: 276 TTWLSTFIDSKSPLSLKTAKSILGALTLRQHTPDSKRRRDFVSRWNTLSNG------SIG 329
F D L ++ + + + + D F+ RW+TL +
Sbjct: 214 ANL--GFTDG-DLLKIQFGGAEVSGFQIVDY--DDSLVSKFIERWSTLEEKEYPGAHTAT 268
Query: 330 LNPYGLYAYDTVWMIARALKLFLDQGNTISFSNDTKXXXXXXXXXXXXXXSIFDGGKKFL 389
+ YD V ++ A + Q IS + + G +
Sbjct: 269 IKYTSALTYDAVQVMTEAFRNLRKQRIEISRRGNAGDCLANPAVP-------WGQGVEIE 321
Query: 390 ANILQTNMTGLSGPIHFNQDRSLLHPSYDIINVIEHGYPQQIGYWSNYSGLSVVPPEKLY 449
+ Q + GLSG I F+Q+ ++ + +I+ + +G P++IGYWS +K+
Sbjct: 322 RALKQVQVEGLSGNIKFDQNGKRINYTINIMELKTNG-PRKIGYWSEV--------DKMV 372
Query: 450 RKPANRSSSNQHLYSVVWPGGVTSKPRGWVFPNNGRQLRIGVPNRVSYRDFVFKVNGTDI 509
+ S Q V + P + N+ + G +
Sbjct: 373 LTEDDTSGLEQKTVVVT---TILESPYVMMKANHA------------------ALAGNER 411
Query: 510 VHGYCIDVFLAAVRLLPYAVPYKFIPYGDGH------KNPTYSELINQITTGVFDAAVGD 563
GYC+D LAA YK GDG ++ ++ ++ G D A+
Sbjct: 412 YEGYCVD--LAAEIAKHCGFKYKLTIVGDGKYGARDADTKIWNGMVGELVYGKADIAIAP 469
Query: 564 IAIVTNRTKAVDFTQPYIESGL-VVVAPVRKLNSSAWAFLRPFTPLMWAXXXXXXXXXXX 622
+ I R + +DF++P++ G+ +++ +K ++FL P +W
Sbjct: 470 LTITLVREEVIDFSKPFMSLGISIMIKKPQKSKPGVFSFLDPLAYEIWMCIVFAYIGVSV 529
Query: 623 XXWILE-----HRLNDEFRGPPRKQ---------IVTVLWFSFSTMFFAHRENTVSTL-G 667
+++ +EF Q I LWFS + + +L G
Sbjct: 530 VLFLVSRFSPYEWHTEEFEDGRETQSSESTNEFGIFNSLWFSLGAFMQQGADISPRSLSG 589
Query: 668 RXXXXXXXXXXXXXTSSYTASLTSILTVQQLSSPIKGIDTLMTSNDRVGYQV---GSFAE 724
R SSYTA+L + LTV+++ SPI+ + L + + Y GS E
Sbjct: 590 RIVGGVWWFFTLIIISSYTANLAAFLTVERMVSPIESAEDL-SKQTEIAYGTLDSGSTKE 648
Query: 725 NYLIEELSIPKSRLVALGSPE--------------------EYAIALENRTVAAVVDERP 764
+ ++++ + S E +YA LE+ + +P
Sbjct: 649 FFRRSKIAVFDKMWTYMRSAEPSVFVRTTAEGVARVRKSKGKYAYLLESTMNEYIEQRKP 708
Query: 765 YIDLFLSDHCQFSVRGQEFTKSGWGFAFPRDSPLAIDMSTAILTLSENGELQRIHDKWLR 824
C G G+G A P+ S L ++ A+L LSE G L ++ +KW
Sbjct: 709 ---------CDTMKVGGNLDSKGYGIATPKGSSLGTPVNLAVLKLSEQGLLDKLKNKWWY 759
Query: 825 KKA 827
K
Sbjct: 760 DKG 762
>pdb|3Q41|A Chain A, Crystal Structure Of The Glun1 N-Terminal Domain (Ntd)
pdb|3Q41|B Chain B, Crystal Structure Of The Glun1 N-Terminal Domain (Ntd)
pdb|3Q41|C Chain C, Crystal Structure Of The Glun1 N-Terminal Domain (Ntd)
Length = 384
Score = 68.2 bits (165), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 96/447 (21%), Positives = 170/447 (38%), Gaps = 87/447 (19%)
Query: 44 ALKPEVLNVGAIFSFGTVNGQVSRIAMKAAQDDINSDPRVLGGRKL-----SITMHDAKF 98
A P+++N+GA+ S +R + ++ +N + G K+ S+T
Sbjct: 1 ACDPKIVNIGAVLS--------TRKHEQMFREAVNQANKRHGSWKIQLNATSVTHKPNAI 52
Query: 99 NGFLSIMGALQFMETDTLAIV-----GPQSAVMAHVLSHLANELQVPLLSFTALDPTLSP 153
LS+ L + + AI+ P +S+ A ++P+L T S
Sbjct: 53 QMALSVCEDL--ISSQVYAILVSHPPTPNDHFTPTPVSYTAGFYRIPVLGLTTRMSIYSD 110
Query: 154 LQYPF-FVQTAPNDLYLMSAIAEMVSYFGWGEVIAIFNDDDQGRNGVTALGDKLAEIRCK 212
F++T P + S EM+ + W +I + +DD +GR L L E K
Sbjct: 111 KSIHLSFLRTVPPYSHQSSVWFEMMRVYNWNHIILLVSDDHEGRAAQKRLETLLEERESK 170
Query: 213 ISYKSALPPDQSVTETDVRNELVKVRMMEARVIVVHGYSRTGLMVFDVAQRLGMMDSGYV 272
P +V L++ R +EARVI++ V+ A L M SGYV
Sbjct: 171 AEKVLQFDPGTK----NVTALLMEARELEARVIILSASEDDAATVYRAAAMLNMTGSGYV 226
Query: 273 WIATTWLSTFIDSKSPLSLKTAKSILGALTLRQHTPDSKRRRDFVSRWNTLSNGSIGLNP 332
W+ + + LR + PD ++ N ++ S
Sbjct: 227 WL------------------VGEREISGNALR-YAPDGIIGLQLINGKNESAHIS----- 262
Query: 333 YGLYAYDTVWMIARALKLFLDQGNTISFSNDTKXXXXXXXXXXXXXXSIFDGGKKFLANI 392
D V ++A+A+ L++ N +I+ G F +
Sbjct: 263 ------DAVGVVAQAVHELLEKENITDPPRGC-----------VGNTNIWKTGPLFKRVL 305
Query: 393 LQTNMT-GLSGPIHFNQDRSLLHPSYDIINVIEHGYPQQIGYWSNYSGLSVVPPEKLYRK 451
+ + G++G + FN+D +Y I+N +++ Q+G Y+G V+P ++
Sbjct: 306 MSSKYADGVTGRVEFNEDGDRKFANYSIMN-LQNRKLVQVGI---YNGTHVIPNDR---- 357
Query: 452 PANRSSSNQHLYSVVWPGGVTSKPRGW 478
++WPGG T KPRG+
Sbjct: 358 ------------KIIWPGGETEKPRGY 372
>pdb|4IO2|A Chain A, Crystal Structure Of The Avglur1 Ligand Binding Domain
Complex With Glutamate At 1.37 Angstrom Resolution
pdb|4IO2|B Chain B, Crystal Structure Of The Avglur1 Ligand Binding Domain
Complex With Glutamate At 1.37 Angstrom Resolution
pdb|4IO3|A Chain A, Crystal Structure Of The Avglur1 Ligand Binding Domain
Complex With Aspartate At 1.66 Angstrom Resolution
pdb|4IO3|B Chain B, Crystal Structure Of The Avglur1 Ligand Binding Domain
Complex With Aspartate At 1.66 Angstrom Resolution
pdb|4IO4|A Chain A, Crystal Structure Of The Avglur1 Ligand Binding Domain
Complex With Serine At 1.94 Angstrom Resolution
pdb|4IO4|B Chain B, Crystal Structure Of The Avglur1 Ligand Binding Domain
Complex With Serine At 1.94 Angstrom Resolution
pdb|4IO5|A Chain A, Crystal Structure Of The Avglur1 Ligand Binding Domain
Complex With Alanine At 1.72 Angstrom Resolution
pdb|4IO5|B Chain B, Crystal Structure Of The Avglur1 Ligand Binding Domain
Complex With Alanine At 1.72 Angstrom Resolution
pdb|4IO6|A Chain A, Crystal Structure Of The Avglur1 Ligand Binding Domain
Complex With Methionine At 1.6 Angstrom Resolution
pdb|4IO6|B Chain B, Crystal Structure Of The Avglur1 Ligand Binding Domain
Complex With Methionine At 1.6 Angstrom Resolution
pdb|4IO7|A Chain A, Crystal Structure Of The Avglur1 Ligand Binding Domain
Complex With Phenylalanine At 1.9 Angstrom Resolution
pdb|4IO7|B Chain B, Crystal Structure Of The Avglur1 Ligand Binding Domain
Complex With Phenylalanine At 1.9 Angstrom Resolution
Length = 248
Score = 62.4 bits (150), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 41/154 (26%), Positives = 77/154 (50%), Gaps = 14/154 (9%)
Query: 684 SYTASLTSILTVQQLSSPIKGIDTLMTSN---DRVGYQVGSFAENYLIEELSIPKSRLVA 740
S + S S+ + + + I G+D L +R+G ++G+ E+Y + E+S
Sbjct: 99 SNSISDNSMRILMRKGTLIDGMDDLKNGKIPYNRIGIRIGTAGEDYYLREISGGSRNFYP 158
Query: 741 LGSPEEYAIALENRTVAAVVDERPYIDLFLSDH------CQFSVRGQEFTKSGWGFAFPR 794
L S +E +L +A ++D ++D+ +++ C ++ G++F KS +G P+
Sbjct: 159 LKSRQEMYDSL----LAGIIDV-SFMDIGTAEYVTNNIYCNLTLVGEDFDKSTFGIVTPK 213
Query: 795 DSPLAIDMSTAILTLSENGELQRIHDKWLRKKAC 828
+ A D+ IL+L E G L + KW + KAC
Sbjct: 214 EWLYAKDLDVNILSLRETGILDNLKKKWFQTKAC 247
>pdb|3SM9|A Chain A, Crystal Structure Of Metabotropic Glutamate Receptor 3
Precursor In Presence Of Ly341495 Antagonist
Length = 479
Score = 57.8 bits (138), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 60/239 (25%), Positives = 103/239 (43%), Gaps = 40/239 (16%)
Query: 69 AMKAAQDDINSDPRVLGGRKLSITMHDAKFNGFLSIMGALQFM----------------- 111
AM A D+IN D +L G KL + + D ++ +L+F+
Sbjct: 46 AMLFAIDEINKDDYLLPGVKLGVHILDTCSRDTYALEQSLEFVRASLTKVDEAEYMCPDG 105
Query: 112 -----ETDTLAIVGPQSAVMAHVLSHLANEL---QVPLLSFTALDPTLS-PLQYPFFVQT 162
E L I G + V +AN L Q+P +S+ + LS +Y +F +T
Sbjct: 106 SYAIQENIPLLIAGVIGGSYSSVSIQVANLLRLFQIPQISYASTSAKLSDKSRYDYFART 165
Query: 163 APNDLYLMSAIAEMVSYFGWGEVIAIFNDDDQGRNGVTALGDKLAEIRCKISYKSALPPD 222
P D Y A+AE++ +F W V + ++ D G G+ A ++ A +R IS +A
Sbjct: 166 VPPDFYQAKAMAEILRFFNWTYVSTVASEGDYGETGIEAF-EQEARLR-NISIATA---- 219
Query: 223 QSVTETDVRNELVKV-----RMMEARVIVVHGYSRTGLMVFDVAQRLGMMDSGYVWIAT 276
+ V +++R V + ARV+V+ S + A R ++ + W+A+
Sbjct: 220 EKVGRSNIRKSYDSVIRELLQKPNARVVVLFMRSDDSRELIAAASR---ANASFTWVAS 275
>pdb|2E4U|A Chain A, Crystal Structure Of The Extracellular Region Of The Group
Ii Metabotropic Glutamate Receptor Complexed With
L-glutamate
pdb|2E4U|B Chain B, Crystal Structure Of The Extracellular Region Of The Group
Ii Metabotropic Glutamate Receptor Complexed With
L-glutamate
pdb|2E4V|A Chain A, Crystal Structure Of The Extracellular Region Of The Group
Ii Metabotropic Glutamate Receptor Complexed With Dcg-Iv
pdb|2E4V|B Chain B, Crystal Structure Of The Extracellular Region Of The Group
Ii Metabotropic Glutamate Receptor Complexed With Dcg-Iv
pdb|2E4W|A Chain A, Crystal Structure Of The Extracellular Region Of The Group
Ii Metabotropic Glutamate Receptor Complexed With
1s,3s-Acpd
pdb|2E4W|B Chain B, Crystal Structure Of The Extracellular Region Of The Group
Ii Metabotropic Glutamate Receptor Complexed With
1s,3s-Acpd
pdb|2E4X|A Chain A, Crystal Structure Of The Extracellular Region Of The Group
Ii Metabotropic Glutamate Receptor Complexed With
1s,3r-Acpd
pdb|2E4X|B Chain B, Crystal Structure Of The Extracellular Region Of The Group
Ii Metabotropic Glutamate Receptor Complexed With
1s,3r-Acpd
pdb|2E4Y|A Chain A, Crystal Structure Of The Extracellular Region Of The Group
Ii Metabotropic Glutamate Receptor Complexed With
2r,4r-Apdc
pdb|2E4Y|B Chain B, Crystal Structure Of The Extracellular Region Of The Group
Ii Metabotropic Glutamate Receptor Complexed With
2r,4r-Apdc
Length = 555
Score = 57.0 bits (136), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 59/239 (24%), Positives = 103/239 (43%), Gaps = 40/239 (16%)
Query: 69 AMKAAQDDINSDPRVLGGRKLSITMHDAKFNGFLSIMGALQFM----------------- 111
AM A D+IN D +L G KL + + D ++ +L+F+
Sbjct: 47 AMLFAIDEINKDNYLLPGVKLGVHILDTCSRDTYALEQSLEFVRASLTKVDEAEYMCPDG 106
Query: 112 -----ETDTLAIVGPQSAVMAHVLSHLANEL---QVPLLSFTALDPTLS-PLQYPFFVQT 162
E L I G + V +AN L Q+P +S+ + LS +Y +F +T
Sbjct: 107 SYAIQENIPLLIAGVIGGSYSSVSIQVANLLRLFQIPQISYASTSAKLSDKSRYDYFART 166
Query: 163 APNDLYLMSAIAEMVSYFGWGEVIAIFNDDDQGRNGVTALGDKLAEIRCKISYKSALPPD 222
P D Y A+AE++ +F W V + ++ D G G+ A ++ A +R I +A
Sbjct: 167 VPPDFYQAKAMAEILRFFNWTYVSTVASEGDYGETGIEAF-EQEARLR-NICIATA---- 220
Query: 223 QSVTETDVRNELVKV-----RMMEARVIVVHGYSRTGLMVFDVAQRLGMMDSGYVWIAT 276
+ V +++R V + ARV+V+ S + A R+ ++ + W+A+
Sbjct: 221 EKVGRSNIRKSYDSVIRELLQKPNARVVVLFMRSDDSRELIAAANRV---NASFTWVAS 276
>pdb|3LMK|A Chain A, Ligand Binding Domain Of Metabotropoc Glutamate Receptor
Mglur5 Complexed With Glutamate
pdb|3LMK|B Chain B, Ligand Binding Domain Of Metabotropoc Glutamate Receptor
Mglur5 Complexed With Glutamate
Length = 492
Score = 53.9 bits (128), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 61/319 (19%), Positives = 133/319 (41%), Gaps = 53/319 (16%)
Query: 44 ALKPEVLNVGAIFSF--------------GTVNGQ--VSRI-AMKAAQDDINSDPRVLGG 86
A P + +GA+FS G V Q + R+ AM + INSDP +L
Sbjct: 16 AHMPGDIIIGALFSVHHQPTVDKVHERKCGAVREQYGIQRVEAMLHTLERINSDPTLLPN 75
Query: 87 RKLSITMHDAKFNGFLSIMGALQFMETDTLA--------------------------IVG 120
L + D+ ++ +++ +++F+ ++ ++G
Sbjct: 76 ITLGCEIRDSCWHSAVALEQSIEFIRDSLISSEEEEGLVRCVDGSSSSFRSKKPIVGVIG 135
Query: 121 PQSAVMAHVLSHLANELQVPLLSFTALDPTLSPLQ-YPFFVQTAPNDLYLMSAIAEMVSY 179
P S+ +A + +L +P ++++A LS + +F++ P+D A+ ++V
Sbjct: 136 PGSSSVAIQVQNLLQLFNIPQIAYSATSMDLSDKTLFKYFMRVVPSDAQQARAMVDIVKR 195
Query: 180 FGWGEVIAIFNDDDQGRNGVTALGDKLAEIRCKISYKSALPPDQSVTETDVRNELVKVRM 239
+ W V A+ + + G +G+ A D A+ I++ + + D + + +
Sbjct: 196 YNWTYVSAVHTEGNYGESGMEAFKDMSAKEGISIAHSYKIYSNAGEQSFDKLLKKLTSHL 255
Query: 240 MEARVIV--VHGYSRTGLMVFDVAQRLGMMDSGYVWIATTWLSTFIDSKSPLSLKTAKSI 297
+ARV+ G + GL++ +RLG+ + + W + ++ +
Sbjct: 256 PKARVVACFCEGMTVRGLLM--AMRRLGLAGEFLLLGSDGWADRY-----DVTDGYQREA 308
Query: 298 LGALTLRQHTPDSKRRRDF 316
+G +T++ +PD K D+
Sbjct: 309 VGGITIKLQSPDVKWFDDY 327
Score = 30.0 bits (66), Expect = 6.3, Method: Compositional matrix adjust.
Identities = 20/74 (27%), Positives = 36/74 (48%), Gaps = 6/74 (8%)
Query: 385 GKKFLANILQTNMTGLSGPIHFNQDRSLLHPSYDIINVIEHGYPQ----QIGYWSNYSGL 440
G+K L ++++TN TG+SG + Y+I+N E G +G W N G
Sbjct: 421 GRKLLESLMKTNFTGVSGDTILFDENGDSPGRYEIMNFKEMGKDYFDYINVGSWDN--GE 478
Query: 441 SVVPPEKLYRKPAN 454
+ ++++ K +N
Sbjct: 479 LKMDDDEVWSKKSN 492
>pdb|4F11|A Chain A, Crystal Structure Of The Extracellular Domain Of Human
Gaba(B) Receptor Gbr2
pdb|4F12|A Chain A, Crystal Structure Of The Extracellular Domain Of Human
Gaba(B) Receptor Gbr2
Length = 433
Score = 53.5 bits (127), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 62/253 (24%), Positives = 107/253 (42%), Gaps = 34/253 (13%)
Query: 124 AVMAHVLSHLANELQ---VPLLSFTALDPTLS-PLQYPFFVQTAPNDLYLMSAIAEMVSY 179
V V S +A LQ + LSF A P L+ +YP+F +T P+D + AI +++ +
Sbjct: 92 GVCPSVTSIIAESLQGWNLVQLSFAATTPVLADKKKYPYFFRTVPSDNAVNPAILKLLKH 151
Query: 180 FGWGEVIAIFNDDD---QGRNGVTALGDKLAEIRCKISYKSALPPDQSVTETDVRNELVK 236
+ W V + D + RN +T + L +IS D D + K
Sbjct: 152 YQWKRVGTLTQDVQRFSEVRNDLTGV---LYGEDIEIS-------DTESFSNDPCTSVKK 201
Query: 237 VRMMEARVIVVHGYSRTGLMVFDVAQRLGMMDSGYVWIATTWLS----TFIDSKSPLSLK 292
++ + R+I+ VF A M S Y WI W + +++ S
Sbjct: 202 LKGNDVRIILGQFDQNMAAKVFCCAYEENMYGSKYQWIIPGWYEPSWWEQVHTEANSSRC 261
Query: 293 TAKSILGA-----------LTLRQ-HTPDSKRRRDFVSRWNTLSNGSIGLNPYGLYAYDT 340
K++L A L+ +Q T K + + +N +G +G + + YAYD
Sbjct: 262 LRKNLLAAMEGYIGVDFEPLSSKQIKTISGKTPQQYEREYNNKRSG-VGPSKFHGYAYDG 320
Query: 341 VWMIARALKLFLD 353
+W+IA+ L+ ++
Sbjct: 321 IWVIAKTLQRAME 333
>pdb|3H6G|A Chain A, Crystal Structure Of The Glur6 Amino Terminal Domain Dimer
Assembly
pdb|3H6G|B Chain B, Crystal Structure Of The Glur6 Amino Terminal Domain Dimer
Assembly
pdb|3H6H|A Chain A, Crystal Structure Of The Glur6 Amino Terminal Domain Dimer
Assembly Mpd Form
pdb|3H6H|B Chain B, Crystal Structure Of The Glur6 Amino Terminal Domain Dimer
Assembly Mpd Form
pdb|3QLV|C Chain C, Crystal Structure Of The Gluk2GLUK5 (GLUR6KA2) ATD
TETRAMER ASSEMBLY
pdb|3QLV|D Chain D, Crystal Structure Of The Gluk2GLUK5 (GLUR6KA2) ATD
TETRAMER ASSEMBLY
pdb|3QLV|F Chain F, Crystal Structure Of The Gluk2GLUK5 (GLUR6KA2) ATD
TETRAMER ASSEMBLY
pdb|3QLV|H Chain H, Crystal Structure Of The Gluk2GLUK5 (GLUR6KA2) ATD
TETRAMER ASSEMBLY
pdb|3QLV|J Chain J, Crystal Structure Of The Gluk2GLUK5 (GLUR6KA2) ATD
TETRAMER ASSEMBLY
Length = 395
Score = 51.2 bits (121), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 90/422 (21%), Positives = 164/422 (38%), Gaps = 59/422 (13%)
Query: 48 EVLNVGAIFSF---GTVNGQVSRIAMKAAQDDINSDPRVLGGRKLSITMHDAK-FNGFLS 103
VL G IF + G + + +A + A + IN + +L L+ ++ F +
Sbjct: 3 HVLRFGGIFEYVESGPMGAE--ELAFRFAVNTINRNRTLLPNTTLTYDTQKINLYDSFEA 60
Query: 104 IMGALQFMETDTLAIVGPQSAVMAHVLSHLANELQVPLLSFTALDPTLSPLQYPFFVQTA 163
A + AI GP + A+ + + N L VP + T +S + F+V
Sbjct: 61 SKKACDQLSLGVAAIFGPSHSSSANAVQSICNALGVPHIQ-TRWKHQVSDNKDSFYVSLY 119
Query: 164 PNDLYLMSAIAEMVSYFGWGEVIAIFNDDDQGRNGVTALGDKLA-----EIRCKISYKSA 218
P+ L AI ++V +F W V +++D G+ L + + +R KI
Sbjct: 120 PDFSSLSRAILDLVQFFKWKTVTVVYDDS----TGLIRLQELIKAPSRYNLRLKI---RQ 172
Query: 219 LPPDQSVTETDVRNELVKVRMMEARVIVVHGYSRTGLMVFDVAQRLGMMDSGYVWIATTW 278
LP D D + L +++ + ++ + A +GMM Y +I TT
Sbjct: 173 LPADTK----DAKPLLKEMKRGKEFHVIFDCSHEMAAGILKQALAMGMMTEYYHYIFTT- 227
Query: 279 LSTFIDSKSPLSLKTAKSILGALTLRQHTPDSKRRRDFVSRWNT------------LSNG 326
L F P S + R ++ + + +W+ L +G
Sbjct: 228 LDLFALDVEPYRY----SGVNMTGFRILNTENTQVSSIIEKWSMERLQAPPKPDSGLLDG 283
Query: 327 SIGLNPYGLYAYDTVWMIARALKLFLDQGNTISFSNDTKXXXXXXXXXXXXXXSIFDGGK 386
+ + YD V +++ A++ F + N K + G
Sbjct: 284 FMTTD--AALMYDAVHVVSVAVQQFPQMTVSSLQCNRHKP---------------WRFGT 326
Query: 387 KFLANILQTNMTGLSGPIHFNQDRSLLHP-SYDIINVIEHGYPQQIGYWSNYSGLSVVPP 445
+F++ I + + GL+G I FN+ L D+I++ E G ++IG W SGL++
Sbjct: 327 RFMSLIKEAHWEGLTGRITFNKTNGLRTDFDLDVISLKEEGL-EKIGTWDPASGLNMTES 385
Query: 446 EK 447
+K
Sbjct: 386 QK 387
>pdb|3OLZ|A Chain A, Crystal Structure Of The Gluk3 (Glur7) Atd Dimer At 2.75
Angstrom Resolution
pdb|3OLZ|B Chain B, Crystal Structure Of The Gluk3 (Glur7) Atd Dimer At 2.75
Angstrom Resolution
Length = 398
Score = 50.1 bits (118), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 93/408 (22%), Positives = 153/408 (37%), Gaps = 26/408 (6%)
Query: 47 PEVLNVGAIFSFGT-VNGQV---SRIAMKAAQDDINSDPRVLGGRKLSITMHDAKF-NGF 101
P V+ +G IF + N QV A + + + IN + +L L+ + F + F
Sbjct: 2 PHVIRIGGIFEYADGPNAQVMNAEEHAFRFSANIINRNRTLLPNTTLTYDIQRIHFHDSF 61
Query: 102 LSIMGALQFMETDTLAIVGPQSAVMAHVLSHLANELQVPLLSFTALDPTLSPLQYPFFVQ 161
+ A + +AI GP + + + N L+VP + L + F+V
Sbjct: 62 EATKKACDQLALGVVAIFGPSQGSCTNAVQSICNALEVPHIQLRWKHHPLDN-KDTFYVN 120
Query: 162 TAPNDLYLMSAIAEMVSYFGWGEVIAIFNDDDQGRNGVTALGDK-LAEIRCKISYKSALP 220
P+ L AI ++V W +++D G+ L + +A R I K
Sbjct: 121 LYPDYASLSHAILDLVQSLKWRSATVVYDDS----TGLIRLQELIMAPSRYNIRLKIRQL 176
Query: 221 PDQSVTETDVRNELVKVRMMEARVIVVHGYSRTGLMVFDVAQRLGMMDSGYVWIATTWLS 280
P S + E+ + R E R+I ++ + A +GMM Y +I TT L
Sbjct: 177 PIDSDDSRPLLKEMKRGR--EFRIIFDCSHTMAA-QILKQAMAMGMMTEYYHFIFTT-LD 232
Query: 281 TFIDSKSPLSLKTAKSILGALTLRQHTPDSKRRRDFVSRWNTLSNGSIGLNPYGLYAYDT 340
+ P S + R D+ V +W+ + GL D
Sbjct: 233 LYALDLEPYRY----SGVNLTGFRILNVDNPHVSAIVEKWSMERLQAAPRAESGL--LDG 286
Query: 341 VWMIARALKLFLDQGNTISFSNDTKXXXXXXXXXXXXXXSIFDGGKKFLANILQTNMTGL 400
V M A L D + +S + GG +F+ I + GL
Sbjct: 287 VMMTDAA--LLYDAVHIVSVCYQRAPQMTVNSLQCHRHKAWRFGG-RFMNFIKEAQWEGL 343
Query: 401 SGPIHFNQDRSLLHP-SYDIINVIEHGYPQQIGYWSNYSGLSVVPPEK 447
+G I FN+ L DII++ E G +++G WS GL++ K
Sbjct: 344 TGRIVFNKTSGLRTDFDLDIISLKEDGL-EKVGVWSPADGLNITEVAK 390
>pdb|1EWK|A Chain A, Crystal Structure Of Metabotropic Glutamate Receptor
Subtype 1 Complexed With Glutamate
pdb|1EWK|B Chain B, Crystal Structure Of Metabotropic Glutamate Receptor
Subtype 1 Complexed With Glutamate
pdb|1EWT|A Chain A, Crystal Structure Of Metabotropic Glutamate Receptor
Subtype 1 Ligand Free Form I
pdb|1EWT|B Chain B, Crystal Structure Of Metabotropic Glutamate Receptor
Subtype 1 Ligand Free Form I
pdb|1EWV|A Chain A, Crystal Structure Of Metabotropic Glutamate Receptor
Subtype 1 Ligand Free Form Ii
pdb|1EWV|B Chain B, Crystal Structure Of Metabotropic Glutamate Receptor
Subtype 1 Ligand Free Form Ii
pdb|1ISR|A Chain A, Crystal Structure Of Metabotropic Glutamate Receptor
Subtype 1 Complexed With Glutamate And Gadolinium Ion
pdb|1ISS|A Chain A, Crystal Structure Of Metabotropic Glutamate Receptor
Subtype 1 Complexed With An Antagonist
pdb|1ISS|B Chain B, Crystal Structure Of Metabotropic Glutamate Receptor
Subtype 1 Complexed With An Antagonist
Length = 490
Score = 49.7 bits (117), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 47/229 (20%), Positives = 99/229 (43%), Gaps = 30/229 (13%)
Query: 69 AMKAAQDDINSDPRVLGGRKLSITMHDAKFNGFLSIMGALQFM---------ETDTL--- 116
AM D IN+DP +L L + D+ ++ +++ +++F+ E D L
Sbjct: 49 AMFHTLDKINADPVLLPNITLGSEIRDSCWHSSVALEQSIEFIRDSLISIRDEKDGLNRC 108
Query: 117 -----------------AIVGPQSAVMAHVLSHLANELQVPLLSFTALDPTLSPLQ-YPF 158
++GP S+ +A + +L +P ++++A LS Y +
Sbjct: 109 LPDGQTLPPGRTKKPIAGVIGPGSSSVAIQVQNLLQLFDIPQIAYSATSIDLSDKTLYKY 168
Query: 159 FVQTAPNDLYLMSAIAEMVSYFGWGEVIAIFNDDDQGRNGVTALGDKLAEIRCKISYKSA 218
F++ P+D A+ ++V + W V A+ + + G +G+ A + A+ I++
Sbjct: 169 FLRVVPSDTLQARAMLDIVKRYNWTYVSAVHTEGNYGESGMDAFKELAAQEGLCIAHSDK 228
Query: 219 LPPDQSVTETDVRNELVKVRMMEARVIVVHGYSRTGLMVFDVAQRLGMM 267
+ + D ++ R+ +ARV+V T + +RLG++
Sbjct: 229 IYSNAGEKSFDRLLRKLRERLPKARVVVCFCEGMTVRGLLSAMRRLGVV 277
>pdb|3KS9|A Chain A, Metabotropic Glutamate Receptor Mglur1 Complexed With
Ly341495 Antagonist
pdb|3KS9|B Chain B, Metabotropic Glutamate Receptor Mglur1 Complexed With
Ly341495 Antagonist
Length = 496
Score = 49.3 bits (116), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 45/229 (19%), Positives = 98/229 (42%), Gaps = 30/229 (13%)
Query: 69 AMKAAQDDINSDPRVLGGRKLSITMHDAKFNGFLSIMGALQFMETDTLAI---------- 118
AM D IN+DP +L L + D+ ++ +++ +++F+ ++I
Sbjct: 54 AMFHTLDKINADPVLLPNITLGSEIRDSCWHSSVALEQSIEFIRDSLISIRDEKDGINRC 113
Query: 119 -------------------VGPQSAVMAHVLSHLANELQVPLLSFTALDPTLSPLQ-YPF 158
+GP S+ +A + +L +P ++++A LS Y +
Sbjct: 114 LPDGQSLPPGRTKKPIAGVIGPGSSSVAIQVQNLLQLFDIPQIAYSATSIDLSDKTLYKY 173
Query: 159 FVQTAPNDLYLMSAIAEMVSYFGWGEVIAIFNDDDQGRNGVTALGDKLAEIRCKISYKSA 218
F++ P+D A+ ++V + W V A+ + + G +G+ A + A+ I++
Sbjct: 174 FLRVVPSDTLQARAMLDIVKRYNWTYVSAVHTEGNYGESGMDAFKELAAQEGLSIAHSDK 233
Query: 219 LPPDQSVTETDVRNELVKVRMMEARVIVVHGYSRTGLMVFDVAQRLGMM 267
+ + D ++ R+ +ARV+V T + +RLG++
Sbjct: 234 IYSNAGEKSFDRLLRKLRERLPKARVVVCFCEGMTVRGLLSAMRRLGVV 282
>pdb|3QLT|A Chain A, Crystal Structure Of A Gluk2 (Glur6) Glycan Wedge
Homodimer Assembly
pdb|3QLT|B Chain B, Crystal Structure Of A Gluk2 (Glur6) Glycan Wedge
Homodimer Assembly
pdb|3QLU|C Chain C, Crystal Structure Of The Gluk2GLUK5 (GLUR6KA2) ATD DIMER
ASSEMBLY
pdb|3QLU|D Chain D, Crystal Structure Of The Gluk2GLUK5 (GLUR6KA2) ATD DIMER
ASSEMBLY
Length = 395
Score = 48.9 bits (115), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 89/422 (21%), Positives = 163/422 (38%), Gaps = 59/422 (13%)
Query: 48 EVLNVGAIFSF---GTVNGQVSRIAMKAAQDDINSDPRVLGGRKLSITMHDAK-FNGFLS 103
VL G IF + G + + +A + A + IN + +L L+ ++ F +
Sbjct: 3 HVLRFGGIFEYVESGPMGAE--ELAFRFAVNTINRNRTLLPNTTLTYDTQKINLYDSFEA 60
Query: 104 IMGALQFMETDTLAIVGPQSAVMAHVLSHLANELQVPLLSFTALDPTLSPLQYPFFVQTA 163
A + AI GP + A+ + + N L VP + T +S + F+V
Sbjct: 61 SKKACDQLSLGVAAIFGPSHSSSANAVQSICNALGVPHIQ-TRWKHQVSDNKDSFYVSLY 119
Query: 164 PNDLYLMSAIAEMVSYFGWGEVIAIFNDDDQGRNGVTALGDKLA-----EIRCKISYKSA 218
P+ L AI ++V +F W V +++D G+ L + + +R KI
Sbjct: 120 PDFSSLSRAILDLVQFFKWKTVTVVYDDS----TGLIRLQELIKAPSRYNLRLKI---RQ 172
Query: 219 LPPDQSVTETDVRNELVKVRMMEARVIVVHGYSRTGLMVFDVAQRLGMMDSGYVWIATTW 278
LP D D + L +++ + ++ + A + MM Y +I TT
Sbjct: 173 LPADTK----DAKPLLKEMKRGKEFHVIFDCSHEMAAGILKQALNMSMMTEYYHYIFTT- 227
Query: 279 LSTFIDSKSPLSLKTAKSILGALTLRQHTPDSKRRRDFVSRWNT------------LSNG 326
L F P S + R ++ + + +W+ L +G
Sbjct: 228 LDLFALDVEPYRY----SGVNMTGFRILNTENTQVSSIIEKWSMERLQAPPKPDSGLLDG 283
Query: 327 SIGLNPYGLYAYDTVWMIARALKLFLDQGNTISFSNDTKXXXXXXXXXXXXXXSIFDGGK 386
+ + YD V +++ A++ F + N K + G
Sbjct: 284 FMTTD--AALMYDAVHVVSVAVQQFPQMTVSSLQCNRHKP---------------WRFGT 326
Query: 387 KFLANILQTNMTGLSGPIHFNQDRSLLHP-SYDIINVIEHGYPQQIGYWSNYSGLSVVPP 445
+F++ I + + GL+G I FN+ L D+I++ E G ++IG W SGL++
Sbjct: 327 RFMSLIKEAHWEGLTGRITFNKTNGLRTDFDLDVISLKEEGL-EKIGTWDPASGLNMTES 385
Query: 446 EK 447
+K
Sbjct: 386 QK 387
>pdb|3QEL|A Chain A, Crystal Structure Of Amino Terminal Domains Of The Nmda
Receptor Subunit Glun1 And Glun2b In Complex With
Ifenprodil
pdb|3QEL|C Chain C, Crystal Structure Of Amino Terminal Domains Of The Nmda
Receptor Subunit Glun1 And Glun2b In Complex With
Ifenprodil
pdb|3QEM|A Chain A, Crystal Structure Of Amino Terminal Domains Of The Nmda
Receptor Subunit Glun1 And Glun2b In Complex With Ro
25-6981
pdb|3QEM|C Chain C, Crystal Structure Of Amino Terminal Domains Of The Nmda
Receptor Subunit Glun1 And Glun2b In Complex With Ro
25-6981
Length = 383
Score = 47.0 bits (110), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 59/251 (23%), Positives = 99/251 (39%), Gaps = 28/251 (11%)
Query: 47 PEVLNVGAIFSFGTVNGQVSRIAMKAAQDDINSDPRVLGGRKLSITMHDAKFNGFLSIMG 106
P+++N+GA+ S + Q+ R A+ A R + + S+T LS+
Sbjct: 2 PKIVNIGAVLSTKK-HEQIFREAVNQANK--RHFTRKIQLQATSVTHRPNAIQMALSVCE 58
Query: 107 ALQFMETDTLAIV-----GPQSAVMAHVLSHLANELQVPLLSFTALDPTLSPLQYPF-FV 160
L + + AI+ P + +S+ A ++P++ T S F+
Sbjct: 59 DL--ISSQVYAILVSHPPAPTDHLTPTPISYTAGFYRIPVIGLTTRMSIYSDKSIHLSFL 116
Query: 161 QTAPNDLYLMSAIAEMVSYFGWGEVIAIFNDDDQGRNGVTALGDKLAEIRCK-------- 212
+T P + EM+ F W VI I +DD +GR L L K
Sbjct: 117 RTVPPYSHQALVWFEMMRLFNWNHVILIVSDDHEGRAAQKKLETLLEGKESKSKKRNYEN 176
Query: 213 ---ISYKSALPPDQSVT---ETDVRNE---LVKVRMMEARVIVVHGYSRTGLMVFDVAQR 263
+SY + P E +N L++ + +EARVI++ V+ A
Sbjct: 177 LDQLSYDNKRGPKADKVLQFEPGTKNLTALLLEAKELEARVIILSASEDDATAVYKSAAM 236
Query: 264 LGMMDSGYVWI 274
L M +GYVW+
Sbjct: 237 LDMTGAGYVWL 247
>pdb|3H5V|A Chain A, Crystal Structure Of The Glur2-atd
pdb|3H5V|B Chain B, Crystal Structure Of The Glur2-atd
pdb|3H5V|C Chain C, Crystal Structure Of The Glur2-atd
pdb|3H5W|A Chain A, Crystal Structure Of The Glur2-Atd In Space Group P212121
Without Solvent
pdb|3H5W|B Chain B, Crystal Structure Of The Glur2-Atd In Space Group P212121
Without Solvent
Length = 394
Score = 46.6 bits (109), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 57/297 (19%), Positives = 118/297 (39%), Gaps = 23/297 (7%)
Query: 156 YPFFVQTAPNDLYLMSAIAEMVSYFGWGEVIAIFNDDDQGRNGVTALGDKLAEIRCKISY 215
+PF +Q P+ L A+ ++ Y+ W + ++ D D+G + + A+ D AE + +++
Sbjct: 106 HPFVIQMRPD---LKGALLSLIEYYQWDKFAYLY-DSDRGLSTLQAVLDSAAEKKWQVTA 161
Query: 216 KSALPPDQSVTETDVRNELVKVRMMEARVIVVHGYSRTGLMVFDVAQRLGMMDSGYVWIA 275
+ + + R+ + + + R +++ + D +G GY +I
Sbjct: 162 INVGNINNDKKDETYRSLFQDLELKKERRVILDCERDKVNDIVDQVITIGKHVKGYHYII 221
Query: 276 TTWLSTFIDSKSPLSLKTAKSILGALTLRQHTPDSKRRRDFVSRWNTLSNG------SIG 329
F D L ++ + + + + D F+ RW+TL +
Sbjct: 222 ANL--GFTDG-DLLKIQFGGANVSGFQIVDY--DDSLVSKFIERWSTLEEKEYPGAHTAT 276
Query: 330 LNPYGLYAYDTVWMIARALKLFLDQGNTISFSNDTKXXXXXXXXXXXXXXSIFDGGKKFL 389
+ YD V ++ A + Q IS + + G +
Sbjct: 277 IKYTSALTYDAVQVMTEAFRNLRKQRIEISRRGNAGDCLANPAVP-------WGQGVEIE 329
Query: 390 ANILQTNMTGLSGPIHFNQDRSLLHPSYDIINVIEHGYPQQIGYWSNYSGLSVVPPE 446
+ Q + GLSG I F+Q+ ++ + +I+ + +G P++IGYWS + V E
Sbjct: 330 RALKQVQVEGLSGNIKFDQNGKRINYTINIMELKTNG-PRKIGYWSEVDKMVVTLTE 385
>pdb|2E4Z|A Chain A, Crystal Structure Of The Ligand-Binding Region Of The
Group Iii Metabotropic Glutamate Receptor
Length = 501
Score = 46.6 bits (109), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 36/158 (22%), Positives = 68/158 (43%), Gaps = 24/158 (15%)
Query: 69 AMKAAQDDINSDPRVLGGRKLSITMHDAKFNGFLSIMGALQFMET----DT--------- 115
AM A D INSDP +L L + D ++ +L F++ DT
Sbjct: 49 AMLYALDQINSDPNLLPNVTLGARILDTCSRDTYALEQSLTFVQALIQKDTSDVRCTNGE 108
Query: 116 ----------LAIVGPQSAVMAHVLSHLANELQVPLLSFTALDPTLSP-LQYPFFVQTAP 164
+ ++G + ++ +++++ Q+P +S+ + P LS +Y FF + P
Sbjct: 109 PPVFVKPEKVVGVIGASGSSVSIMVANILRLFQIPQISYASTAPELSDDRRYDFFSRVVP 168
Query: 165 NDLYLMSAIAEMVSYFGWGEVIAIFNDDDQGRNGVTAL 202
D + A+ ++V GW V + ++ G GV +
Sbjct: 169 PDSFQAQAMVDIVKALGWNYVSTLASEGSYGEKGVESF 206
>pdb|3MQ4|A Chain A, Metabotropic Glutamate Receptor Mglur7 Complexed With
Ly3414 Antagonist
Length = 481
Score = 46.2 bits (108), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 36/158 (22%), Positives = 68/158 (43%), Gaps = 24/158 (15%)
Query: 69 AMKAAQDDINSDPRVLGGRKLSITMHDAKFNGFLSIMGALQFMET----DT--------- 115
AM A D INSDP +L L + D ++ +L F++ DT
Sbjct: 49 AMLYALDQINSDPNLLPNVTLGARILDTCSRDTYALEQSLTFVQALIQKDTSDVRCTNGE 108
Query: 116 ----------LAIVGPQSAVMAHVLSHLANELQVPLLSFTALDPTLSP-LQYPFFVQTAP 164
+ ++G + ++ +++++ Q+P +S+ + P LS +Y FF + P
Sbjct: 109 PPVFVKPEKVVGVIGASGSSVSIMVANILRLFQIPQISYASTAPELSDDRRYDFFSRVVP 168
Query: 165 NDLYLMSAIAEMVSYFGWGEVIAIFNDDDQGRNGVTAL 202
D + A+ ++V GW V + ++ G GV +
Sbjct: 169 PDSFQAQAMVDIVKALGWNYVSTLASEGSYGEKGVESF 206
>pdb|3HSY|A Chain A, High Resolution Structure Of A Dimeric Glur2 N-Terminal
Domain (Ntd)
pdb|3HSY|B Chain B, High Resolution Structure Of A Dimeric Glur2 N-Terminal
Domain (Ntd)
Length = 376
Score = 45.8 bits (107), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 56/293 (19%), Positives = 117/293 (39%), Gaps = 23/293 (7%)
Query: 156 YPFFVQTAPNDLYLMSAIAEMVSYFGWGEVIAIFNDDDQGRNGVTALGDKLAEIRCKISY 215
+PF +Q P+ L A+ ++ Y+ W + ++ D D+G + + A+ D AE + +++
Sbjct: 98 HPFVIQMRPD---LKGALLSLIEYYQWDKFAYLY-DSDRGLSTLQAVLDSAAEKKWQVTA 153
Query: 216 KSALPPDQSVTETDVRNELVKVRMMEARVIVVHGYSRTGLMVFDVAQRLGMMDSGYVWIA 275
+ + + R+ + + + R +++ + D +G GY +I
Sbjct: 154 INVGNINNDKKDETYRSLFQDLELKKERRVILDCERDKVNDIVDQVITIGKHVKGYHYII 213
Query: 276 TTWLSTFIDSKSPLSLKTAKSILGALTLRQHTPDSKRRRDFVSRWNTLSNG------SIG 329
F D L ++ + + + + D F+ RW+TL +
Sbjct: 214 ANL--GFTDG-DLLKIQFGGANVSGFQIVDY--DDSLVSKFIERWSTLEEKEYPGAHTAT 268
Query: 330 LNPYGLYAYDTVWMIARALKLFLDQGNTISFSNDTKXXXXXXXXXXXXXXSIFDGGKKFL 389
+ YD V ++ A + Q IS + + G +
Sbjct: 269 IKYTSALTYDAVQVMTEAFRNLRKQRIEISRRGNAGDCLANPAVP-------WGQGVEIE 321
Query: 390 ANILQTNMTGLSGPIHFNQDRSLLHPSYDIINVIEHGYPQQIGYWSNYSGLSV 442
+ Q + GLSG I F+Q+ ++ + +I+ + +G P++IGYWS + V
Sbjct: 322 RALKQVQVEGLSGNIKFDQNGKRINYTINIMELKTNG-PRKIGYWSEVDKMVV 373
>pdb|2WJW|A Chain A, Crystal Structure Of The Human Ionotropic Glutamate
Receptor Glur2 Atd Region At 1.8 A Resolution
pdb|2WJX|A Chain A, Crystal Structure Of The Human Ionotropic Glutamate
Receptor Glur2 Atd Region At 4.1 A Resolution
pdb|2WJX|B Chain B, Crystal Structure Of The Human Ionotropic Glutamate
Receptor Glur2 Atd Region At 4.1 A Resolution
pdb|2WJX|C Chain C, Crystal Structure Of The Human Ionotropic Glutamate
Receptor Glur2 Atd Region At 4.1 A Resolution
Length = 388
Score = 45.8 bits (107), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 57/297 (19%), Positives = 118/297 (39%), Gaps = 23/297 (7%)
Query: 156 YPFFVQTAPNDLYLMSAIAEMVSYFGWGEVIAIFNDDDQGRNGVTALGDKLAEIRCKISY 215
+PF +Q P+ L A+ ++ Y+ W + ++ D D+G + + A+ D AE + +++
Sbjct: 98 HPFVIQMRPD---LKGALLSLIEYYQWDKFAYLY-DSDRGLSTLQAVLDSAAEKKWQVTA 153
Query: 216 KSALPPDQSVTETDVRNELVKVRMMEARVIVVHGYSRTGLMVFDVAQRLGMMDSGYVWIA 275
+ + + R+ + + + R +++ + D +G GY +I
Sbjct: 154 INVGNINNDKKDEMYRSLFQDLELKKERRVILDCERDKVNDIVDQVITIGKHVKGYHYII 213
Query: 276 TTWLSTFIDSKSPLSLKTAKSILGALTLRQHTPDSKRRRDFVSRWNTLSNG------SIG 329
F D L ++ + + + + D F+ RW+TL +
Sbjct: 214 ANL--GFTDG-DLLKIQFGGANVSGFQIVDY--DDSLVSKFIERWSTLEEKEYPGAHTTT 268
Query: 330 LNPYGLYAYDTVWMIARALKLFLDQGNTISFSNDTKXXXXXXXXXXXXXXSIFDGGKKFL 389
+ YD V ++ A + Q IS + + G +
Sbjct: 269 IKYTSALTYDAVQVMTEAFRNLRKQRIEISRRGNAGDCLANPAVP-------WGQGVEIE 321
Query: 390 ANILQTNMTGLSGPIHFNQDRSLLHPSYDIINVIEHGYPQQIGYWSNYSGLSVVPPE 446
+ Q + GLSG I F+Q+ ++ + +I+ + +G P++IGYWS + V E
Sbjct: 322 RALKQVQVEGLSGNIKFDQNGKRINYTINIMELKTNG-PRKIGYWSEVDKMVVTLTE 377
>pdb|1PB7|A Chain A, Crystal Structure Of The Nr1 Ligand Binding Core In
Complex With Glycine At 1.35 Angstroms Resolution
pdb|1PBQ|A Chain A, Crystal Structure Of The Nr1 Ligand Binding Core In
Complex With 5,7-Dichlorokynurenic Acid (Dcka) At 1.90
Angstroms Resolution
pdb|1PBQ|B Chain B, Crystal Structure Of The Nr1 Ligand Binding Core In
Complex With 5,7-Dichlorokynurenic Acid (Dcka) At 1.90
Angstroms Resolution
pdb|1Y1M|A Chain A, Crystal Structure Of The Nr1 Ligand Binding Core In
Complex With Cycloleucine
pdb|1Y1M|B Chain B, Crystal Structure Of The Nr1 Ligand Binding Core In
Complex With Cycloleucine
pdb|1Y1Z|A Chain A, Crystal Structure Of The Nr1 Ligand Binding Core In
Complex With Acbc
pdb|1Y20|A Chain A, Crystal Structure Of The Nr1 Ligand-binding Core In
Complex With Acpc
pdb|2A5T|A Chain A, Crystal Structure Of The Nr1NR2A LIGAND-Binding Cores
Complex
Length = 292
Score = 45.4 bits (106), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 23/86 (26%), Positives = 42/86 (48%)
Query: 743 SPEEYAIALENRTVAAVVDERPYIDLFLSDHCQFSVRGQEFTKSGWGFAFPRDSPLAIDM 802
S E A+ + + A + + ++ S C G+ F +SG+G +DSP ++
Sbjct: 205 SAAEAIQAVRDNKLHAFIWDSAVLEFEASQKCDLVTTGELFFRSGFGIGMRKDSPWKQNV 264
Query: 803 STAILTLSENGELQRIHDKWLRKKAC 828
S +IL ENG ++ + W+R + C
Sbjct: 265 SLSILKSHENGFMEDLDKTWVRYQEC 290
Score = 34.3 bits (77), Expect = 0.30, Method: Compositional matrix adjust.
Identities = 15/88 (17%), Positives = 39/88 (44%), Gaps = 8/88 (9%)
Query: 509 IVHGYCIDVFLAAVRLLPYAVPYKFIPYG--------DGHKNPTYSELINQITTGVFDAA 560
+G+CID+ + R + + + G + ++ ++ ++ +G D
Sbjct: 62 CCYGFCIDLLIKLARTMNFTYEVHLVADGKFGTQERVNNSNKKEWNGMMGELLSGQADMI 121
Query: 561 VGDIAIVTNRTKAVDFTQPYIESGLVVV 588
V + I R + ++F++P+ GL ++
Sbjct: 122 VAPLTINNERAQYIEFSKPFKYQGLTIL 149
>pdb|1PB8|A Chain A, Crystal Structure Of The Nr1 Ligand Binding Core In
Complex With D-Serine At 1.45 Angstroms Resolution
pdb|1PB9|A Chain A, Crystal Structure Of The Nr1 Ligand Binding Core In
Complex With D-Cycloserine At 1.60 Angstroms Resolution
Length = 292
Score = 45.4 bits (106), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 23/86 (26%), Positives = 42/86 (48%)
Query: 743 SPEEYAIALENRTVAAVVDERPYIDLFLSDHCQFSVRGQEFTKSGWGFAFPRDSPLAIDM 802
S E A+ + + A + + ++ S C G+ F +SG+G +DSP ++
Sbjct: 205 SAAEAIQAVRDNKLHAFIWDSAVLEFEASQKCDLVTTGELFFRSGFGIGMRKDSPWKQNV 264
Query: 803 STAILTLSENGELQRIHDKWLRKKAC 828
S +IL ENG ++ + W+R + C
Sbjct: 265 SLSILKSHENGFMEDLDKTWVRYQEC 290
Score = 36.2 bits (82), Expect = 0.091, Method: Compositional matrix adjust.
Identities = 16/88 (18%), Positives = 40/88 (45%), Gaps = 8/88 (9%)
Query: 509 IVHGYCIDVFLAAVRLLPYAVPYKFIPYG--------DGHKNPTYSELINQITTGVFDAA 560
+G+CID+ + R + + + G + ++ ++ ++ +G D
Sbjct: 62 CCYGFCIDLLIKLARTMNFTYEVHLVADGKFGTQERVNNSNKKEWNGMMGELLSGQADMI 121
Query: 561 VGDIAIVTNRTKAVDFTQPYIESGLVVV 588
V + I T R + ++F++P+ GL ++
Sbjct: 122 VAPLTINTERAQYIEFSKPFKYQGLTIL 149
>pdb|3N6V|A Chain A, Structure Of The Glua2 Ntd-Dimer Interface Mutant, T78a
pdb|3N6V|B Chain B, Structure Of The Glua2 Ntd-Dimer Interface Mutant, T78a
pdb|3N6V|C Chain C, Structure Of The Glua2 Ntd-Dimer Interface Mutant, T78a
pdb|3N6V|D Chain D, Structure Of The Glua2 Ntd-Dimer Interface Mutant, T78a
pdb|3N6V|E Chain E, Structure Of The Glua2 Ntd-Dimer Interface Mutant, T78a
pdb|3N6V|F Chain F, Structure Of The Glua2 Ntd-Dimer Interface Mutant, T78a
Length = 374
Score = 45.4 bits (106), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 56/293 (19%), Positives = 117/293 (39%), Gaps = 23/293 (7%)
Query: 156 YPFFVQTAPNDLYLMSAIAEMVSYFGWGEVIAIFNDDDQGRNGVTALGDKLAEIRCKISY 215
+PF +Q P+ L A+ ++ Y+ W + ++ D D+G + + A+ D AE + +++
Sbjct: 96 HPFVIQMRPD---LKGALLSLIEYYQWDKFAYLY-DSDRGLSTLQAVLDSAAEKKWQVTA 151
Query: 216 KSALPPDQSVTETDVRNELVKVRMMEARVIVVHGYSRTGLMVFDVAQRLGMMDSGYVWIA 275
+ + + R+ + + + R +++ + D +G GY +I
Sbjct: 152 INVGNINNDKKDETYRSLFQDLELKKERRVILDCERDKVNDIVDQVITIGKHVKGYHYII 211
Query: 276 TTWLSTFIDSKSPLSLKTAKSILGALTLRQHTPDSKRRRDFVSRWNTLSNG------SIG 329
F D L ++ + + + + D F+ RW+TL +
Sbjct: 212 ANL--GFTDG-DLLKIQFGGANVSGFQIVDY--DDSLVSKFIERWSTLEEKEYPGAHTAT 266
Query: 330 LNPYGLYAYDTVWMIARALKLFLDQGNTISFSNDTKXXXXXXXXXXXXXXSIFDGGKKFL 389
+ YD V ++ A + Q IS + + G +
Sbjct: 267 IKYTSALTYDAVQVMTEAFRNLRKQRIEISRRGNAGDCLANPAVP-------WGQGVEIE 319
Query: 390 ANILQTNMTGLSGPIHFNQDRSLLHPSYDIINVIEHGYPQQIGYWSNYSGLSV 442
+ Q + GLSG I F+Q+ ++ + +I+ + +G P++IGYWS + V
Sbjct: 320 RALKQVQVEGLSGNIKFDQNGKRINYTINIMELKTNG-PRKIGYWSEVDKMVV 371
>pdb|3O2J|A Chain A, Structure Of The Glua2 Ntd-Dimer Interface Mutant, N54a
pdb|3O2J|B Chain B, Structure Of The Glua2 Ntd-Dimer Interface Mutant, N54a
Length = 388
Score = 45.4 bits (106), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 56/293 (19%), Positives = 117/293 (39%), Gaps = 23/293 (7%)
Query: 156 YPFFVQTAPNDLYLMSAIAEMVSYFGWGEVIAIFNDDDQGRNGVTALGDKLAEIRCKISY 215
+PF +Q P+ L A+ ++ Y+ W + ++ D D+G + + A+ D AE + +++
Sbjct: 101 HPFVIQMRPD---LKGALLSLIEYYQWDKFAYLY-DSDRGLSTLQAVLDSAAEKKWQVTA 156
Query: 216 KSALPPDQSVTETDVRNELVKVRMMEARVIVVHGYSRTGLMVFDVAQRLGMMDSGYVWIA 275
+ + + R+ + + + R +++ + D +G GY +I
Sbjct: 157 INVGNINNDKKDETYRSLFQDLELKKERRVILDCERDKVNDIVDQVITIGKHVKGYHYII 216
Query: 276 TTWLSTFIDSKSPLSLKTAKSILGALTLRQHTPDSKRRRDFVSRWNTLSNG------SIG 329
F D L ++ + + + + D F+ RW+TL +
Sbjct: 217 ANL--GFTDG-DLLKIQFGGANVSGFQIVDY--DDSLVSKFIERWSTLEEKEYPGAHTAT 271
Query: 330 LNPYGLYAYDTVWMIARALKLFLDQGNTISFSNDTKXXXXXXXXXXXXXXSIFDGGKKFL 389
+ YD V ++ A + Q IS + + G +
Sbjct: 272 IKYTSALTYDAVQVMTEAFRNLRKQRIEISRRGNAGDCLANPAVP-------WGQGVEIE 324
Query: 390 ANILQTNMTGLSGPIHFNQDRSLLHPSYDIINVIEHGYPQQIGYWSNYSGLSV 442
+ Q + GLSG I F+Q+ ++ + +I+ + +G P++IGYWS + V
Sbjct: 325 RALKQVQVEGLSGNIKFDQNGKRINYTINIMELKTNG-PRKIGYWSEVDKMVV 376
>pdb|2F34|A Chain A, Crystal Structure Of The Glur5 Ligand Binding Core Dimer
With Ubp310 At 1.74 Angstroms Resolution
pdb|2F34|B Chain B, Crystal Structure Of The Glur5 Ligand Binding Core Dimer
With Ubp310 At 1.74 Angstroms Resolution
pdb|2F35|A Chain A, Crystal Structure Of The Glur5 Ligand Binding Core With
Ubp302 At 1.87 Angstroms Resolution
pdb|2F35|B Chain B, Crystal Structure Of The Glur5 Ligand Binding Core With
Ubp302 At 1.87 Angstroms Resolution
pdb|2F36|A Chain A, Crystal Structure Of The Glur5 Ligand Binding Core Dimer
With Glutamate At 2.1 Angstroms Resolution
pdb|2F36|B Chain B, Crystal Structure Of The Glur5 Ligand Binding Core Dimer
With Glutamate At 2.1 Angstroms Resolution
pdb|2F36|C Chain C, Crystal Structure Of The Glur5 Ligand Binding Core Dimer
With Glutamate At 2.1 Angstroms Resolution
pdb|2F36|D Chain D, Crystal Structure Of The Glur5 Ligand Binding Core Dimer
With Glutamate At 2.1 Angstroms Resolution
pdb|2OJT|A Chain A, Structure And Mechanism Of Kainate Receptor Modulation By
Anions
pdb|2OJT|B Chain B, Structure And Mechanism Of Kainate Receptor Modulation By
Anions
pdb|2QS1|A Chain A, Crystal Structure Of The Glur5 Ligand Binding Core Dimer
In Complex With Ubp315 At 1.80 Angstroms Resolution
pdb|2QS1|B Chain B, Crystal Structure Of The Glur5 Ligand Binding Core Dimer
In Complex With Ubp315 At 1.80 Angstroms Resolution
pdb|2QS2|A Chain A, Crystal Structure Of The Glur5 Ligand Binding Core Dimer
In Complex With Ubp318 At 1.80 Angstroms Resolution
pdb|2QS2|B Chain B, Crystal Structure Of The Glur5 Ligand Binding Core Dimer
In Complex With Ubp318 At 1.80 Angstroms Resolution
pdb|2QS3|A Chain A, Crystal Structure Of The Glur5 Ligand Binding Core Dimer
In Complex With Ubp316 At 1.76 Angstroms Resolution
pdb|2QS3|B Chain B, Crystal Structure Of The Glur5 Ligand Binding Core Dimer
In Complex With Ubp316 At 1.76 Angstroms Resolution
pdb|2QS4|A Chain A, Crystal Structure Of The Glur5 Ligand Binding Core Dimer
In Complex With Ly466195 At 1.58 Angstroms Resolution
pdb|2QS4|B Chain B, Crystal Structure Of The Glur5 Ligand Binding Core Dimer
In Complex With Ly466195 At 1.58 Angstroms Resolution
pdb|2QS4|C Chain C, Crystal Structure Of The Glur5 Ligand Binding Core Dimer
In Complex With Ly466195 At 1.58 Angstroms Resolution
pdb|2QS4|D Chain D, Crystal Structure Of The Glur5 Ligand Binding Core Dimer
In Complex With Ly466195 At 1.58 Angstroms Resolution
Length = 258
Score = 45.4 bits (106), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 24/97 (24%), Positives = 46/97 (47%), Gaps = 3/97 (3%)
Query: 495 VSYRDFVFKVNGTDIVHGYCIDVFLAAVRLLPYAVPYKFIP---YGDGHKNPTYSELINQ 551
V YR + G D GYC+D+ +L + K +P YG + ++ ++ +
Sbjct: 17 VMYRKSDKPLYGNDRFEGYCLDLLKELSNILGFLYDVKLVPDGKYGAQNDKGEWNGMVKE 76
Query: 552 ITTGVFDAAVGDIAIVTNRTKAVDFTQPYIESGLVVV 588
+ D AV + I R K +DF++P++ G+ ++
Sbjct: 77 LIDHRADLAVAPLTITYVREKVIDFSKPFMTLGISIL 113
Score = 42.0 bits (97), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 21/71 (29%), Positives = 32/71 (45%)
Query: 758 AVVDERPYIDLFLSDHCQFSVRGQEFTKSGWGFAFPRDSPLAIDMSTAILTLSENGELQR 817
A++ E I+ +C + G G+G P SP ++ AIL L E G+L
Sbjct: 186 ALLMESTSIEYVTQRNCNLTQIGGLIDSKGYGVGTPIGSPYRDKITIAILQLQEEGKLHM 245
Query: 818 IHDKWLRKKAC 828
+ +KW R C
Sbjct: 246 MKEKWWRGNGC 256
>pdb|1TXF|A Chain A, Crystal Structure Of The Glur5 Ligand Binding Core In
Complex With Glutamate At 2.1 Angstrom Resolution
pdb|3C31|A Chain A, Crystal Structure Of Glur5 Ligand-Binding Core In Complex
With Lithium At 1.49 Angstrom Resolution
pdb|3C31|B Chain B, Crystal Structure Of Glur5 Ligand-Binding Core In Complex
With Lithium At 1.49 Angstrom Resolution
pdb|3C32|A Chain A, Crystal Structure Of Glur5 Ligand-Binding Core In Complex
With Sodium At 1.72 Angstrom Resolution
pdb|3C32|B Chain B, Crystal Structure Of Glur5 Ligand-Binding Core In Complex
With Sodium At 1.72 Angstrom Resolution
pdb|3C33|A Chain A, Crystal Structure Of Glur5 Ligand-Binding Core In Complex
With Potassium At 1.78 Angstrom Resolution
pdb|3C33|B Chain B, Crystal Structure Of Glur5 Ligand-Binding Core In Complex
With Potassium At 1.78 Angstrom Resolution
pdb|3C34|A Chain A, Crystal Structure Of Glur5 Ligand-Binding Core In Complex
With Rubidium At 1.82 Angstrom Resolution
pdb|3C34|B Chain B, Crystal Structure Of Glur5 Ligand-Binding Core In Complex
With Rubidium At 1.82 Angstrom Resolution
pdb|3C35|A Chain A, Crystal Structure Of Glur5 Ligand-Binding Core In Complex
With Cesium At 1.97 Angstrom Resolution
pdb|3C35|B Chain B, Crystal Structure Of Glur5 Ligand-Binding Core In Complex
With Cesium At 1.97 Angstrom Resolution
pdb|3C36|A Chain A, Crystal Structure Of Glur5 Ligand-Binding Core In Complex
With Ammonium Ions At 1.68 Angstrom Resolution
pdb|3C36|B Chain B, Crystal Structure Of Glur5 Ligand-Binding Core In Complex
With Ammonium Ions At 1.68 Angstrom Resolution
Length = 258
Score = 45.1 bits (105), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 24/97 (24%), Positives = 46/97 (47%), Gaps = 3/97 (3%)
Query: 495 VSYRDFVFKVNGTDIVHGYCIDVFLAAVRLLPYAVPYKFIP---YGDGHKNPTYSELINQ 551
V YR + G D GYC+D+ +L + K +P YG + ++ ++ +
Sbjct: 17 VMYRKSDKPLYGNDRFEGYCLDLLKELSNILGFLYDVKLVPDGKYGAQNDKGEWNGMVKE 76
Query: 552 ITTGVFDAAVGDIAIVTNRTKAVDFTQPYIESGLVVV 588
+ D AV + I R K +DF++P++ G+ ++
Sbjct: 77 LIDHRADLAVAPLTITYVREKVIDFSKPFMTLGISIL 113
Score = 42.0 bits (97), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 21/71 (29%), Positives = 32/71 (45%)
Query: 758 AVVDERPYIDLFLSDHCQFSVRGQEFTKSGWGFAFPRDSPLAIDMSTAILTLSENGELQR 817
A++ E I+ +C + G G+G P SP ++ AIL L E G+L
Sbjct: 186 ALLMESTSIEYVTQRNCNLTQIGGLIDSKGYGVGTPIGSPYRDKITIAILQLQEEGKLHM 245
Query: 818 IHDKWLRKKAC 828
+ +KW R C
Sbjct: 246 MKEKWWRGNGC 256
>pdb|1YCJ|A Chain A, Crystal Structure Of The Kainate Receptor Glur5 Ligand-
Binding Core In Complex With (S)-Glutamate
pdb|1YCJ|B Chain B, Crystal Structure Of The Kainate Receptor Glur5 Ligand-
Binding Core In Complex With (S)-Glutamate
pdb|1VSO|A Chain A, Crystal Structure Of The Ligand-Binding Core Of Iglur5 In
Complex With The Antagonist (S)-Atpo At 1.85 A
Resolution
pdb|2PBW|A Chain A, Crystal Structure Of The Ligand-Binding Core Of Iglur5 In
Complex With The Partial Agonist Domoic Acid At 2.5 A
Resolution
pdb|2PBW|B Chain B, Crystal Structure Of The Ligand-Binding Core Of Iglur5 In
Complex With The Partial Agonist Domoic Acid At 2.5 A
Resolution
pdb|3GBA|A Chain A, X-Ray Structure Of Iglur5 Ligand-Binding Core (S1s2) In
Complex With Dysiherbaine At 1.35a Resolution
pdb|3GBA|B Chain B, X-Ray Structure Of Iglur5 Ligand-Binding Core (S1s2) In
Complex With Dysiherbaine At 1.35a Resolution
pdb|3GBA|C Chain C, X-Ray Structure Of Iglur5 Ligand-Binding Core (S1s2) In
Complex With Dysiherbaine At 1.35a Resolution
pdb|3GBA|D Chain D, X-Ray Structure Of Iglur5 Ligand-Binding Core (S1s2) In
Complex With Dysiherbaine At 1.35a Resolution
pdb|3GBB|A Chain A, X-Ray Strucutre Of Iglur5 Ligand-Binding Core (S1s2) In
Complex With Msviii-19 At 2.10a Resolution
pdb|3GBB|B Chain B, X-Ray Strucutre Of Iglur5 Ligand-Binding Core (S1s2) In
Complex With Msviii-19 At 2.10a Resolution
pdb|3S2V|A Chain A, Crystal Structure Of The Ligand Binding Domain Of Gluk1 In
Complex With An Antagonist
(S)-1-(2'-Amino-2'-Carboxyethyl)-3-[(2-
Carboxythien-3-Yl)methyl]thieno[3,4-D]pyrimidin-2,
4-Dione At 2.5 A Resolution
pdb|3S2V|B Chain B, Crystal Structure Of The Ligand Binding Domain Of Gluk1 In
Complex With An Antagonist
(S)-1-(2'-Amino-2'-Carboxyethyl)-3-[(2-
Carboxythien-3-Yl)methyl]thieno[3,4-D]pyrimidin-2,
4-Dione At 2.5 A Resolution
pdb|4E0X|A Chain A, Crystal Structure Of The Kainate Receptor Gluk1
Ligand-Binding Domain In Complex With Kainate In The
Absence Of Glycerol
pdb|4E0X|B Chain B, Crystal Structure Of The Kainate Receptor Gluk1
Ligand-Binding Domain In Complex With Kainate In The
Absence Of Glycerol
pdb|4DLD|A Chain A, Crystal Structure Of The Gluk1 Ligand-Binding Domain
(S1s2) In Complex With The Antagonist
(S)-2-Amino-3-(2-(2-Carboxyethyl)-5-Chloro-4-
Nitrophenyl)propionic Acid At 2.0 A Resolution
pdb|4DLD|B Chain B, Crystal Structure Of The Gluk1 Ligand-Binding Domain
(S1s2) In Complex With The Antagonist
(S)-2-Amino-3-(2-(2-Carboxyethyl)-5-Chloro-4-
Nitrophenyl)propionic Acid At 2.0 A Resolution
Length = 257
Score = 45.1 bits (105), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 24/97 (24%), Positives = 46/97 (47%), Gaps = 3/97 (3%)
Query: 495 VSYRDFVFKVNGTDIVHGYCIDVFLAAVRLLPYAVPYKFIP---YGDGHKNPTYSELINQ 551
V YR + G D GYC+D+ +L + K +P YG + ++ ++ +
Sbjct: 17 VMYRKSDKPLYGNDRFEGYCLDLLKELSNILGFLYDVKLVPDGKYGAQNDKGEWNGMVKE 76
Query: 552 ITTGVFDAAVGDIAIVTNRTKAVDFTQPYIESGLVVV 588
+ D AV + I R K +DF++P++ G+ ++
Sbjct: 77 LIDHRADLAVAPLTITYVREKVIDFSKPFMTLGISIL 113
Score = 42.0 bits (97), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 21/71 (29%), Positives = 32/71 (45%)
Query: 758 AVVDERPYIDLFLSDHCQFSVRGQEFTKSGWGFAFPRDSPLAIDMSTAILTLSENGELQR 817
A++ E I+ +C + G G+G P SP ++ AIL L E G+L
Sbjct: 186 ALLMESTSIEYVTQRNCNLTQIGGLIDSKGYGVGTPIGSPYRDKITIAILQLQEEGKLHM 245
Query: 818 IHDKWLRKKAC 828
+ +KW R C
Sbjct: 246 MKEKWWRGNGC 256
>pdb|2WKY|A Chain A, Crystal Structure Of The Ligand-Binding Core Of Glur5 In
Complex With The Agonist 4-Ahcp
pdb|2WKY|B Chain B, Crystal Structure Of The Ligand-Binding Core Of Glur5 In
Complex With The Agonist 4-Ahcp
Length = 258
Score = 45.1 bits (105), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 24/97 (24%), Positives = 46/97 (47%), Gaps = 3/97 (3%)
Query: 495 VSYRDFVFKVNGTDIVHGYCIDVFLAAVRLLPYAVPYKFIP---YGDGHKNPTYSELINQ 551
V YR + G D GYC+D+ +L + K +P YG + ++ ++ +
Sbjct: 17 VMYRKSDKPLYGNDRFEGYCLDLLKELSNILGFLYDVKLVPDGKYGAQNDKGEWNGMVKE 76
Query: 552 ITTGVFDAAVGDIAIVTNRTKAVDFTQPYIESGLVVV 588
+ D AV + I R K +DF++P++ G+ ++
Sbjct: 77 LIDHRADLAVAPLTITYVREKVIDFSKPFMTLGISIL 113
Score = 42.0 bits (97), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 21/71 (29%), Positives = 32/71 (45%)
Query: 758 AVVDERPYIDLFLSDHCQFSVRGQEFTKSGWGFAFPRDSPLAIDMSTAILTLSENGELQR 817
A++ E I+ +C + G G+G P SP ++ AIL L E G+L
Sbjct: 186 ALLMESTSIEYVTQRNCNLTQIGGLIDSKGYGVGTPIGSPYRDKITIAILQLQEEGKLHM 245
Query: 818 IHDKWLRKKAC 828
+ +KW R C
Sbjct: 246 MKEKWWRGNGC 256
>pdb|2ZNS|A Chain A, Crystal Structure Of The Ligand-Binding Core Of The Human
Ionotropic Glutamate Receptor, Glur5, In Complex With
Glutamate
pdb|2ZNT|A Chain A, Crystal Structure Of The Ligand-Binding Core Of The Human
Ionotropic Glutamate Receptor, Glur5, In Complex With A
Novel Selective Agonist, Dysiherbaine
pdb|2ZNU|A Chain A, Crystal Structure Of The Ligand-Binding Core Of The Human
Ionotropic Glutamate Receptor, Glur5, In Complex With A
Novel Selective Agonist, Neodysiherbaine A
pdb|3FUZ|A Chain A, Crystal Structure Of The Human Glutamate Receptor, Glur5,
Ligand- Binding Core In Complex With L-Glutamate In
Space Group P1
pdb|3FUZ|B Chain B, Crystal Structure Of The Human Glutamate Receptor, Glur5,
Ligand- Binding Core In Complex With L-Glutamate In
Space Group P1
pdb|3FV1|A Chain A, Crystal Structure Of The Human Glutamate Receptor, Glur5,
Ligand- Binding Core In Complex With Dysiherbaine In
Space Group P1
pdb|3FV1|B Chain B, Crystal Structure Of The Human Glutamate Receptor, Glur5,
Ligand- Binding Core In Complex With Dysiherbaine In
Space Group P1
pdb|3FV2|A Chain A, Crystal Structure Of The Human Glutamate Receptor, Glur5,
Ligand- Binding Core In Complex With Neodysiherbaine A
In Space Group P1
pdb|3FV2|B Chain B, Crystal Structure Of The Human Glutamate Receptor, Glur5,
Ligand- Binding Core In Complex With Neodysiherbaine A
In Space Group P1
pdb|3FVG|A Chain A, Crystal Structure Of The Human Glutamate Receptor, Glur5,
Ligand- Binding Core In Complex With Msviii-19 In Space
Group P1
pdb|3FVG|B Chain B, Crystal Structure Of The Human Glutamate Receptor, Glur5,
Ligand- Binding Core In Complex With Msviii-19 In Space
Group P1
pdb|3FVK|A Chain A, Crystal Structure Of The Human Glutamate Receptor, Glur5,
Ligand- Binding Core In Complex With
8-Deoxy-Neodysiherbaine A In Space Group P1
pdb|3FVK|B Chain B, Crystal Structure Of The Human Glutamate Receptor, Glur5,
Ligand- Binding Core In Complex With
8-Deoxy-Neodysiherbaine A In Space Group P1
pdb|3FVN|A Chain A, Crystal Structure Of The Human Glutamate Receptor, Glur5,
Ligand- Binding Core In Complex With
9-Deoxy-Neodysiherbaine A In Space Group P1
pdb|3FVN|B Chain B, Crystal Structure Of The Human Glutamate Receptor, Glur5,
Ligand- Binding Core In Complex With
9-Deoxy-Neodysiherbaine A In Space Group P1
pdb|3FVO|A Chain A, Crystal Structure Of The Human Glutamate Receptor, Glur5,
Ligand-Binding Core In Complex With
8-Epi-Neodysiherbaine A In Space Group P1
pdb|3FVO|B Chain B, Crystal Structure Of The Human Glutamate Receptor, Glur5,
Ligand-Binding Core In Complex With
8-Epi-Neodysiherbaine A In Space Group P1
Length = 256
Score = 45.1 bits (105), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 24/97 (24%), Positives = 46/97 (47%), Gaps = 3/97 (3%)
Query: 495 VSYRDFVFKVNGTDIVHGYCIDVFLAAVRLLPYAVPYKFIP---YGDGHKNPTYSELINQ 551
V YR + G D GYC+D+ +L + K +P YG + ++ ++ +
Sbjct: 16 VMYRKSDKPLYGNDRFEGYCLDLLKELSNILGFIYDVKLVPDGKYGAQNDKGEWNGMVKE 75
Query: 552 ITTGVFDAAVGDIAIVTNRTKAVDFTQPYIESGLVVV 588
+ D AV + I R K +DF++P++ G+ ++
Sbjct: 76 LIDHRADLAVAPLTITYVREKVIDFSKPFMTLGISIL 112
Score = 42.0 bits (97), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 21/71 (29%), Positives = 32/71 (45%)
Query: 758 AVVDERPYIDLFLSDHCQFSVRGQEFTKSGWGFAFPRDSPLAIDMSTAILTLSENGELQR 817
A++ E I+ +C + G G+G P SP ++ AIL L E G+L
Sbjct: 185 ALLMESTSIEYVTQRNCNLTQIGGLIDSKGYGVGTPIGSPYRDKITIAILQLQEEGKLHM 244
Query: 818 IHDKWLRKKAC 828
+ +KW R C
Sbjct: 245 MKEKWWRGNGC 255
>pdb|2PYY|A Chain A, Crystal Structure Of The Glur0 Ligand-Binding Core From
Nostoc Punctiforme In Complex With (L)-Glutamate
pdb|2PYY|C Chain C, Crystal Structure Of The Glur0 Ligand-Binding Core From
Nostoc Punctiforme In Complex With (L)-Glutamate
pdb|2PYY|B Chain B, Crystal Structure Of The Glur0 Ligand-Binding Core From
Nostoc Punctiforme In Complex With (L)-Glutamate
Length = 228
Score = 45.1 bits (105), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 25/84 (29%), Positives = 41/84 (48%), Gaps = 2/84 (2%)
Query: 745 EEYAIALENRTVAAVVDERPYIDLFLSDHCQFSVR--GQEFTKSGWGFAFPRDSPLAIDM 802
EE AL+ + AVV + P + + ++ + V G + +G P +SP +
Sbjct: 141 EEAYKALQTKKADAVVFDAPVLLFYAANEGKGKVEIVGSILREESYGIILPNNSPYRKPI 200
Query: 803 STAILTLSENGELQRIHDKWLRKK 826
+ A+L L ENG Q ++DKW K
Sbjct: 201 NQALLNLKENGTYQSLYDKWFDPK 224
>pdb|3U92|A Chain A, Crystal Structure Of The Gluk3 Ligand Binding Domain
Complex With Kainate And Zinc: P2221 Form
pdb|3U92|B Chain B, Crystal Structure Of The Gluk3 Ligand Binding Domain
Complex With Kainate And Zinc: P2221 Form
pdb|3U93|A Chain A, Crystal Structure Of The Gluk3 Ligand Binding Domain
Complex With Glutamate And Zinc: P2221 Form
pdb|3U93|B Chain B, Crystal Structure Of The Gluk3 Ligand Binding Domain
Complex With Glutamate And Zinc: P2221 Form
pdb|3U94|A Chain A, Crystal Structure Of The Gluk3 Ligand Binding Domain
Complex With Glutamate And Zinc: P21212 Form
pdb|3U94|B Chain B, Crystal Structure Of The Gluk3 Ligand Binding Domain
Complex With Glutamate And Zinc: P21212 Form
pdb|3U94|C Chain C, Crystal Structure Of The Gluk3 Ligand Binding Domain
Complex With Glutamate And Zinc: P21212 Form
pdb|3U94|D Chain D, Crystal Structure Of The Gluk3 Ligand Binding Domain
Complex With Glutamate And Zinc: P21212 Form
Length = 257
Score = 44.3 bits (103), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 23/97 (23%), Positives = 46/97 (47%), Gaps = 3/97 (3%)
Query: 495 VSYRDFVFKVNGTDIVHGYCIDVFLAAVRLLPYAVPYKFIP---YGDGHKNPTYSELINQ 551
V +R + G D GYCID+ +L ++ + + YG ++ ++ +
Sbjct: 17 VMFRKSDRTLYGNDRFEGYCIDLLKELAHILGFSYEIRLVEDGKYGAQDDKGQWNGMVKE 76
Query: 552 ITTGVFDAAVGDIAIVTNRTKAVDFTQPYIESGLVVV 588
+ D AV + I R KA+DF++P++ G+ ++
Sbjct: 77 LIDHKADLAVAPLTITHVREKAIDFSKPFMTLGVSIL 113
Score = 38.9 bits (89), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 20/71 (28%), Positives = 31/71 (43%)
Query: 758 AVVDERPYIDLFLSDHCQFSVRGQEFTKSGWGFAFPRDSPLAIDMSTAILTLSENGELQR 817
A++ E I+ +C + G G+G P SP ++ AIL L E +L
Sbjct: 185 ALLMESTTIEYITQRNCNLTQIGGLIDSKGYGIGTPMGSPYRDKITIAILQLQEEDKLHI 244
Query: 818 IHDKWLRKKAC 828
+ +KW R C
Sbjct: 245 MKEKWWRGSGC 255
>pdb|3S9E|A Chain A, Crystal Structure Of The Kainate Receptor Gluk3 Ligand
Binding Domain In Complex With (S)-Glutamate
pdb|3S9E|B Chain B, Crystal Structure Of The Kainate Receptor Gluk3 Ligand
Binding Domain In Complex With (S)-Glutamate
pdb|4E0W|A Chain A, Crystal Structure Of The Kainate Receptor Gluk3 Ligand
Binding Domain In Complex With Kainate
pdb|4G8N|A Chain A, Crystal Structure Of The Kainate Receptor Gluk3
Ligand-Binding Domain In Complex With The Agonist G8m
Length = 258
Score = 44.3 bits (103), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 23/97 (23%), Positives = 46/97 (47%), Gaps = 3/97 (3%)
Query: 495 VSYRDFVFKVNGTDIVHGYCIDVFLAAVRLLPYAVPYKFIP---YGDGHKNPTYSELINQ 551
V +R + G D GYCID+ +L ++ + + YG ++ ++ +
Sbjct: 19 VMFRKSDRTLYGNDRFEGYCIDLLKELAHILGFSYEIRLVEDGKYGAQDDKGQWNGMVKE 78
Query: 552 ITTGVFDAAVGDIAIVTNRTKAVDFTQPYIESGLVVV 588
+ D AV + I R KA+DF++P++ G+ ++
Sbjct: 79 LIDHKADLAVAPLTITHVREKAIDFSKPFMTLGVSIL 115
Score = 39.3 bits (90), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 21/83 (25%), Positives = 35/83 (42%), Gaps = 10/83 (12%)
Query: 746 EYAIALENRTVAAVVDERPYIDLFLSDHCQFSVRGQEFTKSGWGFAFPRDSPLAIDMSTA 805
+YA+ +E+ T+ + +C + G G+G P SP ++ A
Sbjct: 185 DYALLMESTTIEYITQR----------NCNLTQIGGLIDSKGYGIGTPMGSPYRDKITIA 234
Query: 806 ILTLSENGELQRIHDKWLRKKAC 828
IL L E +L + +KW R C
Sbjct: 235 ILQLQEEDKLHIMKEKWWRGSGC 257
>pdb|2XXU|A Chain A, Crystal Structure Of The Gluk2 (Glur6) M770k Lbd Dimer In
Complex With Glutamate
pdb|2XXU|B Chain B, Crystal Structure Of The Gluk2 (Glur6) M770k Lbd Dimer In
Complex With Glutamate
pdb|2XXV|A Chain A, Crystal Structure Of The Gluk2 (Glur6) M770k Lbd Dimer In
Complex With Kainate
pdb|2XXV|B Chain B, Crystal Structure Of The Gluk2 (Glur6) M770k Lbd Dimer In
Complex With Kainate
Length = 261
Score = 43.5 bits (101), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 23/83 (27%), Positives = 36/83 (43%), Gaps = 10/83 (12%)
Query: 746 EYAIALENRTVAAVVDERPYIDLFLSDHCQFSVRGQEFTKSGWGFAFPRDSPLAIDMSTA 805
+YA +E+ T+ V +C + G G+G P+ SP ++ A
Sbjct: 185 DYAFLMESTTIEFVTQR----------NCNLTQIGGLIDSKGYGVGTPKGSPYRDKITIA 234
Query: 806 ILTLSENGELQRIHDKWLRKKAC 828
IL L E G+L + +KW R C
Sbjct: 235 ILQLQEEGKLHMMKEKWWRGNGC 257
Score = 40.8 bits (94), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 25/91 (27%), Positives = 41/91 (45%), Gaps = 12/91 (13%)
Query: 506 GTDIVHGYCIDVFLAAVRLLPYAVPYKFIPYG--------DGHKNPTYSELINQITTGVF 557
G D GYCID+ +L + + + G +G N ELI+
Sbjct: 28 GNDRFEGYCIDLLRELSTILGFTYEIRLVEDGKYGAQDDVNGQWNGMVRELIDHKA---- 83
Query: 558 DAAVGDIAIVTNRTKAVDFTQPYIESGLVVV 588
D AV +AI R K +DF++P++ G+ ++
Sbjct: 84 DLAVAPLAITYVREKVIDFSKPFMTLGISIL 114
>pdb|3QEK|A Chain A, Crystal Structure Of Amino Terminal Domain Of The Nmda
Receptor Subunit Glun1
pdb|3QEK|B Chain B, Crystal Structure Of Amino Terminal Domain Of The Nmda
Receptor Subunit Glun1
Length = 384
Score = 43.5 bits (101), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 57/251 (22%), Positives = 96/251 (38%), Gaps = 28/251 (11%)
Query: 47 PEVLNVGAIFSFGTVNGQVSRIAMKAAQDDINSDPRVLGGRKLSITMHDAKFNGFLSIMG 106
P+++N+GA+ S + Q+ R A+ A R + + S+T LS+
Sbjct: 3 PKIVNIGAVLSTKK-HEQIFREAVNQANK--RHFTRKIQLQATSVTHRPNAIQXALSVCE 59
Query: 107 ALQFMETDTLAIV-----GPQSAVMAHVLSHLANELQVPLLSFTALDPTLSPLQYPF-FV 160
L + + AI+ P + +S+ A ++P++ T S F+
Sbjct: 60 DL--ISSQVYAILVSHPPAPTDHLTPTPISYTAGFYRIPVIGLTTRXSIYSDKSIHLSFL 117
Query: 161 QTAPNDLYLMSAIAEMVSYFGWGEVIAIFNDDDQGRNGVTALGDKLAEIRCK-------- 212
+T P + E F W VI I +DD +GR L L K
Sbjct: 118 RTVPPYSHQALVWFEXXRLFNWNHVILIVSDDHEGRAAQKKLETLLEGKESKSKKRNYEN 177
Query: 213 ---ISYKSALPPDQSVT---ETDVRNE---LVKVRMMEARVIVVHGYSRTGLMVFDVAQR 263
+SY + P E +N L++ + +EARVI++ V+ A
Sbjct: 178 LDQLSYDNKRGPKADKVLQFEPGTKNLTALLLEAKELEARVIILSASEDDATAVYKSAAX 237
Query: 264 LGMMDSGYVWI 274
L +GYVW+
Sbjct: 238 LDXTGAGYVWL 248
>pdb|2RCA|B Chain B, Crystal Structure Of The Nr3b Ligand Binding Core Complex
With Glycine At 1.58 Angstrom Resolution
pdb|2RCB|A Chain A, Crystal Structure Of The Nr3b Ligand Binding Core Complex
With D- Serine At 1.62 Angstrom Resolution
pdb|2RCB|B Chain B, Crystal Structure Of The Nr3b Ligand Binding Core Complex
With D- Serine At 1.62 Angstrom Resolution
pdb|2RCA|A Chain A, Crystal Structure Of The Nr3b Ligand Binding Core Complex
With Glycine At 1.58 Angstrom Resolution
Length = 292
Score = 42.7 bits (99), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 22/85 (25%), Positives = 38/85 (44%), Gaps = 12/85 (14%)
Query: 756 VAAVVDERPYIDLFLSDH------------CQFSVRGQEFTKSGWGFAFPRDSPLAIDMS 803
VA + + P ++ F+ D C+ G+ F G+G P++SPL ++S
Sbjct: 206 VAMLTSDPPKLNAFIMDKSLLDYEVSIDADCKLLTVGKPFAIEGYGIGLPQNSPLTSNLS 265
Query: 804 TAILTLSENGELQRIHDKWLRKKAC 828
I +G + +HDKW + C
Sbjct: 266 EFISRYKSSGFIDLLHDKWYKMVPC 290
Score = 37.4 bits (85), Expect = 0.045, Method: Compositional matrix adjust.
Identities = 27/103 (26%), Positives = 46/103 (44%), Gaps = 12/103 (11%)
Query: 500 FVFKVNGT------DIVHGYCIDVFLAAVRLLPYAVPYKFIPYGDGH----KNPTYSELI 549
F VNG+ +GYCID+ L A ++ GDG ++ ++ L+
Sbjct: 50 FAALVNGSVPRTLRRCCYGYCIDLLERLAEDL--AFDFELYIVGDGKYGALRDGRWTGLV 107
Query: 550 NQITTGVFDAAVGDIAIVTNRTKAVDFTQPYIESGLVVVAPVR 592
+ G AV +I + R++ VDFT P+ + L ++ R
Sbjct: 108 GDLLAGRAHMAVTSFSINSARSQVVDFTSPFFSTSLGIMVRTR 150
>pdb|2A5S|A Chain A, Crystal Structure Of The Nr2a Ligand Binding Core In
Complex With Glutamate
pdb|2A5T|B Chain B, Crystal Structure Of The Nr1NR2A LIGAND-Binding Cores
Complex
Length = 284
Score = 42.4 bits (98), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 29/108 (26%), Positives = 49/108 (45%), Gaps = 9/108 (8%)
Query: 491 VPNRVSYRDFVFKVNGTD-------IVHGYCIDVFLAAVRLLPYAVPYKFIPYGDGHK-- 541
V N V R FV N T+ G+CID+ R + + + G K
Sbjct: 31 VRNTVPCRKFVKINNSTNEGMNVKKCCKGFCIDILKKLSRTVKFTYDLYLVTNGKHGKKV 90
Query: 542 NPTYSELINQITTGVFDAAVGDIAIVTNRTKAVDFTQPYIESGLVVVA 589
N ++ +I ++ AVG + I R++ VDF+ P++E+G+ V+
Sbjct: 91 NNVWNGMIGEVVYQRAVMAVGSLTINEERSEVVDFSVPFVETGISVMV 138
Score = 30.8 bits (68), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 13/44 (29%), Positives = 22/44 (50%)
Query: 780 GQEFTKSGWGFAFPRDSPLAIDMSTAILTLSENGELQRIHDKWL 823
G F +G+G A + SP + A+L +GE++ + WL
Sbjct: 235 GYIFATTGYGIALQKGSPWKRQIDLALLQFVGDGEMEELETLWL 278
>pdb|1YAE|A Chain A, Structure Of The Kainate Receptor Subunit Glur6 Agonist
Binding Domain Complexed With Domoic Acid
pdb|1YAE|B Chain B, Structure Of The Kainate Receptor Subunit Glur6 Agonist
Binding Domain Complexed With Domoic Acid
pdb|1YAE|C Chain C, Structure Of The Kainate Receptor Subunit Glur6 Agonist
Binding Domain Complexed With Domoic Acid
pdb|1YAE|D Chain D, Structure Of The Kainate Receptor Subunit Glur6 Agonist
Binding Domain Complexed With Domoic Acid
pdb|1YAE|E Chain E, Structure Of The Kainate Receptor Subunit Glur6 Agonist
Binding Domain Complexed With Domoic Acid
pdb|1YAE|F Chain F, Structure Of The Kainate Receptor Subunit Glur6 Agonist
Binding Domain Complexed With Domoic Acid
Length = 312
Score = 42.4 bits (98), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 21/71 (29%), Positives = 31/71 (43%)
Query: 758 AVVDERPYIDLFLSDHCQFSVRGQEFTKSGWGFAFPRDSPLAIDMSTAILTLSENGELQR 817
A + E I+ +C + G G+G P SP ++ AIL L E G+L
Sbjct: 221 AFLMESTTIEFVTQRNCNLTQIGGLIDSKGYGVGTPMGSPYRDKITIAILQLQEEGKLHM 280
Query: 818 IHDKWLRKKAC 828
+ +KW R C
Sbjct: 281 MKEKWWRGNGC 291
Score = 41.2 bits (95), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 28/100 (28%), Positives = 45/100 (45%), Gaps = 14/100 (14%)
Query: 506 GTDIVHGYCIDVFLAAVRLLPYAVPYKFIPYG--------DGHKNPTYSELINQITTGVF 557
G D GYCID+ +L + + + G +G N ELI+
Sbjct: 37 GNDRFEGYCIDLLRELSTILGFTYEIRLVEDGKYGAQDDVNGQWNGMVRELIDHKA---- 92
Query: 558 DAAVGDIAIVTNRTKAVDFTQPYIESGLVVVAPVRKLNSS 597
D AV +AI R K +DF++P++ G+ ++ RK N +
Sbjct: 93 DLAVAPLAITYVREKVIDFSKPFMTLGISIL--YRKPNGT 130
>pdb|2XXW|A Chain A, Crystal Structure Of The Gluk2 (Glur6) D776k Lbd Dimer In
Complex With Glutamate
pdb|2XXW|B Chain B, Crystal Structure Of The Gluk2 (Glur6) D776k Lbd Dimer In
Complex With Glutamate
pdb|2XXX|A Chain A, Crystal Structure Of The Gluk2 (Glur6) D776k Lbd Dimer In
Complex With Glutamate (P21 21 21)
pdb|2XXX|B Chain B, Crystal Structure Of The Gluk2 (Glur6) D776k Lbd Dimer In
Complex With Glutamate (P21 21 21)
pdb|2XXX|C Chain C, Crystal Structure Of The Gluk2 (Glur6) D776k Lbd Dimer In
Complex With Glutamate (P21 21 21)
pdb|2XXX|D Chain D, Crystal Structure Of The Gluk2 (Glur6) D776k Lbd Dimer In
Complex With Glutamate (P21 21 21)
pdb|2XXY|A Chain A, Crystal Structure Of The Gluk2 (Glur6) D776k Lbd Dimer In
Complex With Kainate
pdb|2XXY|B Chain B, Crystal Structure Of The Gluk2 (Glur6) D776k Lbd Dimer In
Complex With Kainate
pdb|2XXY|C Chain C, Crystal Structure Of The Gluk2 (Glur6) D776k Lbd Dimer In
Complex With Kainate
pdb|2XXY|D Chain D, Crystal Structure Of The Gluk2 (Glur6) D776k Lbd Dimer In
Complex With Kainate
Length = 261
Score = 42.4 bits (98), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 21/71 (29%), Positives = 31/71 (43%)
Query: 758 AVVDERPYIDLFLSDHCQFSVRGQEFTKSGWGFAFPRDSPLAIDMSTAILTLSENGELQR 817
A + E I+ +C + G G+G P SP ++ AIL L E G+L
Sbjct: 187 AFLMESTTIEFVTQRNCNLTQIGGLIDSKGYGVGTPMGSPYRKKITIAILQLQEEGKLHM 246
Query: 818 IHDKWLRKKAC 828
+ +KW R C
Sbjct: 247 MKEKWWRGNGC 257
Score = 40.8 bits (94), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 25/91 (27%), Positives = 41/91 (45%), Gaps = 12/91 (13%)
Query: 506 GTDIVHGYCIDVFLAAVRLLPYAVPYKFIPYG--------DGHKNPTYSELINQITTGVF 557
G D GYCID+ +L + + + G +G N ELI+
Sbjct: 28 GNDRFEGYCIDLLRELSTILGFTYEIRLVEDGKYGAQDDVNGQWNGMVRELIDHKA---- 83
Query: 558 DAAVGDIAIVTNRTKAVDFTQPYIESGLVVV 588
D AV +AI R K +DF++P++ G+ ++
Sbjct: 84 DLAVAPLAITYVREKVIDFSKPFMTLGISIL 114
>pdb|2XXR|A Chain A, Crystal Structure Of The Gluk2 (Glur6) Wild-Type Lbd Dimer
In Complex With Glutamate
pdb|2XXR|B Chain B, Crystal Structure Of The Gluk2 (Glur6) Wild-Type Lbd Dimer
In Complex With Glutamate
pdb|2XXT|A Chain A, Crystal Structure Of The Gluk2 (Glur6) Wild-Type Lbd Dimer
In Complex With Kainate
pdb|2XXT|B Chain B, Crystal Structure Of The Gluk2 (Glur6) Wild-Type Lbd Dimer
In Complex With Kainate
Length = 261
Score = 42.4 bits (98), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 23/83 (27%), Positives = 35/83 (42%), Gaps = 10/83 (12%)
Query: 746 EYAIALENRTVAAVVDERPYIDLFLSDHCQFSVRGQEFTKSGWGFAFPRDSPLAIDMSTA 805
+YA +E+ T+ V +C + G G+G P SP ++ A
Sbjct: 185 DYAFLMESTTIEFVTQR----------NCNLTQIGGLIDSKGYGVGTPMGSPYRDKITIA 234
Query: 806 ILTLSENGELQRIHDKWLRKKAC 828
IL L E G+L + +KW R C
Sbjct: 235 ILQLQEEGKLHMMKEKWWRGNGC 257
Score = 40.8 bits (94), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 25/91 (27%), Positives = 41/91 (45%), Gaps = 12/91 (13%)
Query: 506 GTDIVHGYCIDVFLAAVRLLPYAVPYKFIPYG--------DGHKNPTYSELINQITTGVF 557
G D GYCID+ +L + + + G +G N ELI+
Sbjct: 28 GNDRFEGYCIDLLRELSTILGFTYEIRLVEDGKYGAQDDVNGQWNGMVRELIDHKA---- 83
Query: 558 DAAVGDIAIVTNRTKAVDFTQPYIESGLVVV 588
D AV +AI R K +DF++P++ G+ ++
Sbjct: 84 DLAVAPLAITYVREKVIDFSKPFMTLGISIL 114
>pdb|1S50|A Chain A, X-Ray Structure Of The Glur6 Ligand Binding Core (S1s2a)
In Complex With Glutamate At 1.65 A Resolution
pdb|1S7Y|A Chain A, Crystal Structure Of The Glur6 Ligand Binding Core In
Complex With Glutamate At 1.75 A Resolution Orthorhombic
Form
pdb|1S7Y|B Chain B, Crystal Structure Of The Glur6 Ligand Binding Core In
Complex With Glutamate At 1.75 A Resolution Orthorhombic
Form
pdb|1S9T|A Chain A, Crystal Structure Of The Glur6 Ligand Binding Core In
Complex With Quisqualate At 1.8a Resolution
pdb|1S9T|B Chain B, Crystal Structure Of The Glur6 Ligand Binding Core In
Complex With Quisqualate At 1.8a Resolution
pdb|1SD3|A Chain A, Crystal Structure Of The Glur6 Ligand Binding Core In
Complex With 2s,4r-4-Methylglutamate At 1.8 Angstrom
Resolution
pdb|1SD3|B Chain B, Crystal Structure Of The Glur6 Ligand Binding Core In
Complex With 2s,4r-4-Methylglutamate At 1.8 Angstrom
Resolution
pdb|1TT1|A Chain A, Crystal Structure Of The Glur6 Ligand Binding Core In
Complex With Kainate 1.93 A Resolution
pdb|1TT1|B Chain B, Crystal Structure Of The Glur6 Ligand Binding Core In
Complex With Kainate 1.93 A Resolution
pdb|3G3F|A Chain A, Crystal Structure Of The Glur6 Ligand Binding Domain Dimer
With Glutamate And Nacl At 1.38 Angstrom Resolution
pdb|3G3F|B Chain B, Crystal Structure Of The Glur6 Ligand Binding Domain Dimer
With Glutamate And Nacl At 1.38 Angstrom Resolution
Length = 259
Score = 42.0 bits (97), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 23/83 (27%), Positives = 35/83 (42%), Gaps = 10/83 (12%)
Query: 746 EYAIALENRTVAAVVDERPYIDLFLSDHCQFSVRGQEFTKSGWGFAFPRDSPLAIDMSTA 805
+YA +E+ T+ V +C + G G+G P SP ++ A
Sbjct: 185 DYAFLMESTTIEFVTQR----------NCNLTQIGGLIDSKGYGVGTPMGSPYRDKITIA 234
Query: 806 ILTLSENGELQRIHDKWLRKKAC 828
IL L E G+L + +KW R C
Sbjct: 235 ILQLQEEGKLHMMKEKWWRGNGC 257
Score = 40.8 bits (94), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 25/91 (27%), Positives = 41/91 (45%), Gaps = 12/91 (13%)
Query: 506 GTDIVHGYCIDVFLAAVRLLPYAVPYKFIPYG--------DGHKNPTYSELINQITTGVF 557
G D GYCID+ +L + + + G +G N ELI+
Sbjct: 28 GNDRFEGYCIDLLRELSTILGFTYEIRLVEDGKYGAQDDVNGQWNGMVRELIDHKA---- 83
Query: 558 DAAVGDIAIVTNRTKAVDFTQPYIESGLVVV 588
D AV +AI R K +DF++P++ G+ ++
Sbjct: 84 DLAVAPLAITYVREKVIDFSKPFMTLGISIL 114
>pdb|3G3G|A Chain A, Crystal Structure Of The Glur6 Ligand Binding Domain Dimer
K665r Mutant With Glutamate And Nacl At 1.3 Angstrom
Resolution
pdb|3G3G|B Chain B, Crystal Structure Of The Glur6 Ligand Binding Domain Dimer
K665r Mutant With Glutamate And Nacl At 1.3 Angstrom
Resolution
Length = 259
Score = 42.0 bits (97), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 23/83 (27%), Positives = 35/83 (42%), Gaps = 10/83 (12%)
Query: 746 EYAIALENRTVAAVVDERPYIDLFLSDHCQFSVRGQEFTKSGWGFAFPRDSPLAIDMSTA 805
+YA +E+ T+ V +C + G G+G P SP ++ A
Sbjct: 185 DYAFLMESTTIEFVTQR----------NCNLTQIGGLIDSKGYGVGTPMGSPYRDKITIA 234
Query: 806 ILTLSENGELQRIHDKWLRKKAC 828
IL L E G+L + +KW R C
Sbjct: 235 ILQLQEEGKLHMMKEKWWRGNGC 257
Score = 40.8 bits (94), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 25/91 (27%), Positives = 41/91 (45%), Gaps = 12/91 (13%)
Query: 506 GTDIVHGYCIDVFLAAVRLLPYAVPYKFIPYG--------DGHKNPTYSELINQITTGVF 557
G D GYCID+ +L + + + G +G N ELI+
Sbjct: 28 GNDRFEGYCIDLLRELSTILGFTYEIRLVEDGKYGAQDDVNGQWNGMVRELIDHKA---- 83
Query: 558 DAAVGDIAIVTNRTKAVDFTQPYIESGLVVV 588
D AV +AI R K +DF++P++ G+ ++
Sbjct: 84 DLAVAPLAITYVREKVIDFSKPFMTLGISIL 114
>pdb|3QXM|A Chain A, Crystal Structure Of Human Gluk2 Ligand-Binding Core In
Complex With Novel Marine-Derived Toxins,
Neodysiherbaine A
pdb|3QXM|B Chain B, Crystal Structure Of Human Gluk2 Ligand-Binding Core In
Complex With Novel Marine-Derived Toxins,
Neodysiherbaine A
Length = 258
Score = 42.0 bits (97), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 23/83 (27%), Positives = 35/83 (42%), Gaps = 10/83 (12%)
Query: 746 EYAIALENRTVAAVVDERPYIDLFLSDHCQFSVRGQEFTKSGWGFAFPRDSPLAIDMSTA 805
+YA +E+ T+ V +C + G G+G P SP ++ A
Sbjct: 184 DYAFLMESTTIEFVTQR----------NCNLTQIGGLIDSKGYGVGTPMGSPYRDKITIA 233
Query: 806 ILTLSENGELQRIHDKWLRKKAC 828
IL L E G+L + +KW R C
Sbjct: 234 ILQLQEEGKLHMMKEKWWRGNGC 256
Score = 41.2 bits (95), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 21/87 (24%), Positives = 41/87 (47%), Gaps = 4/87 (4%)
Query: 506 GTDIVHGYCIDVFLAAVRLLPYAVPYKFIPYG----DGHKNPTYSELINQITTGVFDAAV 561
G D GYCID+ +L + + + G N ++ ++ ++ D AV
Sbjct: 27 GNDRFEGYCIDLLRELSTILGFTYEIRLVEDGKYGAQDDANGQWNGMVRELIDHKADLAV 86
Query: 562 GDIAIVTNRTKAVDFTQPYIESGLVVV 588
+AI R K +DF++P++ G+ ++
Sbjct: 87 APLAITYVREKVIDFSKPFMTLGISIL 113
>pdb|2I0B|A Chain A, Crystal Structure Of The Glur6 Ligand Binding Core Elkq
Mutant Dimer At 1.96 Angstroms Resolution
pdb|2I0B|B Chain B, Crystal Structure Of The Glur6 Ligand Binding Core Elkq
Mutant Dimer At 1.96 Angstroms Resolution
pdb|2I0B|C Chain C, Crystal Structure Of The Glur6 Ligand Binding Core Elkq
Mutant Dimer At 1.96 Angstroms Resolution
Length = 259
Score = 42.0 bits (97), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 23/83 (27%), Positives = 35/83 (42%), Gaps = 10/83 (12%)
Query: 746 EYAIALENRTVAAVVDERPYIDLFLSDHCQFSVRGQEFTKSGWGFAFPRDSPLAIDMSTA 805
+YA +E+ T+ V +C + G G+G P SP ++ A
Sbjct: 185 DYAFLMESTTIEFVTQR----------NCNLTQIGGLIDSKGYGVGTPMGSPYRDKITLA 234
Query: 806 ILTLSENGELQRIHDKWLRKKAC 828
IL L E G+L + +KW R C
Sbjct: 235 ILKLQEQGKLHMMKEKWWRGNGC 257
Score = 39.7 bits (91), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 24/91 (26%), Positives = 41/91 (45%), Gaps = 12/91 (13%)
Query: 506 GTDIVHGYCIDVFLAAVRLLPYAVPYKFIPYG--------DGHKNPTYSELINQITTGVF 557
G D GYCID+ +L + + + G +G N ELI+
Sbjct: 28 GNDRFEGYCIDLLRELSTILGFTYEIRLVEDGKYGAQDDVNGQWNGMVRELIDHKA---- 83
Query: 558 DAAVGDIAIVTNRTKAVDFTQPYIESGLVVV 588
D AV +AI R + +DF++P++ G+ ++
Sbjct: 84 DLAVAPLAITYVREEVIDFSKPFMTLGISIL 114
>pdb|3G3K|A Chain A, Crystal Structure Of The Glur6 Ligand Binding Domain Dimer
I442h K494e K665r I749l Q753k E757q Mutant With
Glutamate And Nacl At 1.24 Angstrom Resolution
pdb|3G3K|B Chain B, Crystal Structure Of The Glur6 Ligand Binding Domain Dimer
I442h K494e K665r I749l Q753k E757q Mutant With
Glutamate And Nacl At 1.24 Angstrom Resolution
Length = 259
Score = 42.0 bits (97), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 23/83 (27%), Positives = 35/83 (42%), Gaps = 10/83 (12%)
Query: 746 EYAIALENRTVAAVVDERPYIDLFLSDHCQFSVRGQEFTKSGWGFAFPRDSPLAIDMSTA 805
+YA +E+ T+ V +C + G G+G P SP ++ A
Sbjct: 185 DYAFLMESTTIEFVTQR----------NCNLTQIGGLIDSKGYGVGTPMGSPYRDKITLA 234
Query: 806 ILTLSENGELQRIHDKWLRKKAC 828
IL L E G+L + +KW R C
Sbjct: 235 ILKLQEQGKLHMMKEKWWRGNGC 257
Score = 38.1 bits (87), Expect = 0.026, Method: Compositional matrix adjust.
Identities = 24/91 (26%), Positives = 40/91 (43%), Gaps = 12/91 (13%)
Query: 506 GTDIVHGYCIDVFLAAVRLLPYAVPYKFIPYG--------DGHKNPTYSELINQITTGVF 557
G D GYCID+ L + + + G +G N ELI+
Sbjct: 28 GNDRFEGYCIDLLRELSTHLGFTYEIRLVEDGKYGAQDDVNGQWNGMVRELIDHKA---- 83
Query: 558 DAAVGDIAIVTNRTKAVDFTQPYIESGLVVV 588
D AV +AI R + +DF++P++ G+ ++
Sbjct: 84 DLAVAPLAITYVREEVIDFSKPFMTLGISIL 114
>pdb|3G3H|A Chain A, Crystal Structure Of The Glur6 Ligand Binding Domain Dimer
K665r I749l Q753k Mutant With Glutamate And Nacl At 1.5
Angstrom Resolution
pdb|3G3H|B Chain B, Crystal Structure Of The Glur6 Ligand Binding Domain Dimer
K665r I749l Q753k Mutant With Glutamate And Nacl At 1.5
Angstrom Resolution
Length = 259
Score = 42.0 bits (97), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 23/83 (27%), Positives = 35/83 (42%), Gaps = 10/83 (12%)
Query: 746 EYAIALENRTVAAVVDERPYIDLFLSDHCQFSVRGQEFTKSGWGFAFPRDSPLAIDMSTA 805
+YA +E+ T+ V +C + G G+G P SP ++ A
Sbjct: 185 DYAFLMESTTIEFVTQR----------NCNLTQIGGLIDSKGYGVGTPMGSPYRDKITLA 234
Query: 806 ILTLSENGELQRIHDKWLRKKAC 828
IL L E G+L + +KW R C
Sbjct: 235 ILKLQEEGKLHMMKEKWWRGNGC 257
Score = 41.2 bits (95), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 25/91 (27%), Positives = 41/91 (45%), Gaps = 12/91 (13%)
Query: 506 GTDIVHGYCIDVFLAAVRLLPYAVPYKFIPYG--------DGHKNPTYSELINQITTGVF 557
G D GYCID+ +L + + + G +G N ELI+
Sbjct: 28 GNDRFEGYCIDLLRELSTILGFTYEIRLVEDGKYGAQDDVNGQWNGMVRELIDHKA---- 83
Query: 558 DAAVGDIAIVTNRTKAVDFTQPYIESGLVVV 588
D AV +AI R K +DF++P++ G+ ++
Sbjct: 84 DLAVAPLAITYVREKVIDFSKPFMTLGISIL 114
>pdb|3G3I|A Chain A, Crystal Structure Of The Glur6 Ligand Binding Domain Dimer
I442h K494e I749l Q753k Mutant With Glutamate And Nacl
At 1.37 Angstrom Resolution
pdb|3G3I|B Chain B, Crystal Structure Of The Glur6 Ligand Binding Domain Dimer
I442h K494e I749l Q753k Mutant With Glutamate And Nacl
At 1.37 Angstrom Resolution
Length = 259
Score = 42.0 bits (97), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 23/83 (27%), Positives = 35/83 (42%), Gaps = 10/83 (12%)
Query: 746 EYAIALENRTVAAVVDERPYIDLFLSDHCQFSVRGQEFTKSGWGFAFPRDSPLAIDMSTA 805
+YA +E+ T+ V +C + G G+G P SP ++ A
Sbjct: 185 DYAFLMESTTIEFVTQR----------NCNLTQIGGLIDSKGYGVGTPMGSPYRDKITLA 234
Query: 806 ILTLSENGELQRIHDKWLRKKAC 828
IL L E G+L + +KW R C
Sbjct: 235 ILKLQEEGKLHMMKEKWWRGNGC 257
Score = 37.7 bits (86), Expect = 0.027, Method: Compositional matrix adjust.
Identities = 24/91 (26%), Positives = 40/91 (43%), Gaps = 12/91 (13%)
Query: 506 GTDIVHGYCIDVFLAAVRLLPYAVPYKFIPYG--------DGHKNPTYSELINQITTGVF 557
G D GYCID+ L + + + G +G N ELI+
Sbjct: 28 GNDRFEGYCIDLLRELSTHLGFTYEIRLVEDGKYGAQDDVNGQWNGMVRELIDHKA---- 83
Query: 558 DAAVGDIAIVTNRTKAVDFTQPYIESGLVVV 588
D AV +AI R + +DF++P++ G+ ++
Sbjct: 84 DLAVAPLAITYVREEVIDFSKPFMTLGISIL 114
>pdb|3G3J|A Chain A, Crystal Structure Of The Glur6 Ligand Binding Domain Dimer
I442h K494e K665r I749l Q753k Mutant With Glutamate And
Nacl At 1.32 Angstrom Resolution
pdb|3G3J|B Chain B, Crystal Structure Of The Glur6 Ligand Binding Domain Dimer
I442h K494e K665r I749l Q753k Mutant With Glutamate And
Nacl At 1.32 Angstrom Resolution
Length = 259
Score = 42.0 bits (97), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 23/83 (27%), Positives = 35/83 (42%), Gaps = 10/83 (12%)
Query: 746 EYAIALENRTVAAVVDERPYIDLFLSDHCQFSVRGQEFTKSGWGFAFPRDSPLAIDMSTA 805
+YA +E+ T+ V +C + G G+G P SP ++ A
Sbjct: 185 DYAFLMESTTIEFVTQR----------NCNLTQIGGLIDSKGYGVGTPMGSPYRDKITLA 234
Query: 806 ILTLSENGELQRIHDKWLRKKAC 828
IL L E G+L + +KW R C
Sbjct: 235 ILKLQEEGKLHMMKEKWWRGNGC 257
Score = 38.1 bits (87), Expect = 0.026, Method: Compositional matrix adjust.
Identities = 24/91 (26%), Positives = 40/91 (43%), Gaps = 12/91 (13%)
Query: 506 GTDIVHGYCIDVFLAAVRLLPYAVPYKFIPYG--------DGHKNPTYSELINQITTGVF 557
G D GYCID+ L + + + G +G N ELI+
Sbjct: 28 GNDRFEGYCIDLLRELSTHLGFTYEIRLVEDGKYGAQDDVNGQWNGMVRELIDHKA---- 83
Query: 558 DAAVGDIAIVTNRTKAVDFTQPYIESGLVVV 588
D AV +AI R + +DF++P++ G+ ++
Sbjct: 84 DLAVAPLAITYVREEVIDFSKPFMTLGISIL 114
>pdb|2I0C|A Chain A, Crystal Structure Of The Glur6 Ligand Binding Core Dimer
Crosslinked By Disulfide Bonds Between Y490c And L752c
At 2.25 Angstroms Resolution
pdb|2I0C|B Chain B, Crystal Structure Of The Glur6 Ligand Binding Core Dimer
Crosslinked By Disulfide Bonds Between Y490c And L752c
At 2.25 Angstroms Resolution
Length = 259
Score = 41.6 bits (96), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 25/91 (27%), Positives = 41/91 (45%), Gaps = 12/91 (13%)
Query: 506 GTDIVHGYCIDVFLAAVRLLPYAVPYKFIPYG--------DGHKNPTYSELINQITTGVF 557
G D GYCID+ +L + + + G +G N ELI+
Sbjct: 28 GNDRFEGYCIDLLRELSTILGFTYEIRLVEDGKYGAQDDVNGQWNGMVRELIDHKA---- 83
Query: 558 DAAVGDIAIVTNRTKAVDFTQPYIESGLVVV 588
D AV +AI R K +DF++P++ G+ ++
Sbjct: 84 DLAVAPLAITCVREKVIDFSKPFMTLGISIL 114
Score = 40.0 bits (92), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 20/71 (28%), Positives = 30/71 (42%)
Query: 758 AVVDERPYIDLFLSDHCQFSVRGQEFTKSGWGFAFPRDSPLAIDMSTAILTLSENGELQR 817
A + E I+ +C + G G+G P SP ++ AI L E G+L
Sbjct: 187 AFLMESTTIEFVTQRNCNLTQIGGLIDSKGYGVGTPMGSPYRDKITIAICQLQEEGKLHM 246
Query: 818 IHDKWLRKKAC 828
+ +KW R C
Sbjct: 247 MKEKWWRGNGC 257
>pdb|2RC7|A Chain A, Crystal Structure Of The Nr3a Ligand Binding Core Complex
With Glycine At 1.58 Angstrom Resolution
pdb|2RC8|A Chain A, Crystal Structure Of The Nr3a Ligand Binding Core Complex
With D- Serine At 1.45 Angstrom Resolution
pdb|2RC8|B Chain B, Crystal Structure Of The Nr3a Ligand Binding Core Complex
With D- Serine At 1.45 Angstrom Resolution
pdb|2RC9|A Chain A, Crystal Structure Of The Nr3a Ligand Binding Core Complex
With Acpc At 1.96 Angstrom Resolution
pdb|2RC9|B Chain B, Crystal Structure Of The Nr3a Ligand Binding Core Complex
With Acpc At 1.96 Angstrom Resolution
pdb|2RC7|B Chain B, Crystal Structure Of The Nr3a Ligand Binding Core Complex
With Glycine At 1.58 Angstrom Resolution
Length = 294
Score = 41.2 bits (95), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 17/55 (30%), Positives = 27/55 (49%)
Query: 774 CQFSVRGQEFTKSGWGFAFPRDSPLAIDMSTAILTLSENGELQRIHDKWLRKKAC 828
C+ G+ F G+G P +SPL ++S I +G + +HDKW + C
Sbjct: 238 CKLLTVGKPFAIEGYGIGLPPNSPLTSNISELISQYKSHGFMDVLHDKWYKVVPC 292
Score = 40.8 bits (94), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 26/90 (28%), Positives = 45/90 (50%), Gaps = 10/90 (11%)
Query: 509 IVHGYCIDVFLAAVRLLPYAVPYKFIPY--GDGH----KNPTYSELINQITTGVFDAAVG 562
+GYCID+ + L + + F Y GDG KN ++ L+ + +G + AV
Sbjct: 67 CCYGYCIDL----LEQLAEDMNFDFDLYIVGDGKYGAWKNGHWTGLVGDLLSGTANMAVT 122
Query: 563 DIAIVTNRTKAVDFTQPYIESGLVVVAPVR 592
+I T R++ +DFT P+ + L ++ R
Sbjct: 123 SFSINTARSQVIDFTSPFFSTSLGILVRTR 152
>pdb|4F3P|A Chain A, Crystal Structure Of A Glutamine-Binding Periplasmic
Protein From Burkholderia Pseudomallei In Complex With
Glutamine
pdb|4F3P|B Chain B, Crystal Structure Of A Glutamine-Binding Periplasmic
Protein From Burkholderia Pseudomallei In Complex With
Glutamine
Length = 249
Score = 40.8 bits (94), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 32/141 (22%), Positives = 67/141 (47%), Gaps = 8/141 (5%)
Query: 685 YTASLTSILTVQQLSSPIKGIDTLMTSNDRVGYQVGSFAENYLIEELSIPKSRLVALGSP 744
Y + L ++ VQ ++ IK ID L + + + G+ +++ L PK + +
Sbjct: 107 YDSGLAAM--VQANNTTIKSIDDL--NGKVIAAKTGTATIDWIKAHLK-PK-EIRQFPNI 160
Query: 745 EEYAIALENRTVAAVVDERPYIDLFLSDHCQFSVR--GQEFTKSGWGFAFPRDSPLAIDM 802
++ +ALE V A + + P + F+++ + V+ G + +G FP+ SPL +
Sbjct: 161 DQAYLALEAGRVDAAMHDTPNVLFFVNNEGKGRVKVAGAPVSGDKYGIGFPKGSPLVAKV 220
Query: 803 STAILTLSENGELQRIHDKWL 823
+ + + +G +I+ KW
Sbjct: 221 NAELARMKADGRYAKIYKKWF 241
Score = 35.0 bits (79), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 16/44 (36%), Positives = 25/44 (56%)
Query: 545 YSELINQITTGVFDAAVGDIAIVTNRTKAVDFTQPYIESGLVVV 588
++ LI + T D A+ + I R KA+DF+ PY +SGL +
Sbjct: 71 FAGLIPALQTQNIDVALSGMTIKEERRKAIDFSDPYYDSGLAAM 114
>pdb|3DP4|A Chain A, Crystal Structure Of The Binding Domain Of The Ampa
Subunit Glur3 Bound To Ampa
pdb|3DLN|A Chain A, Crystal Structure Of The Binding Domain Of The Ampa
Subunit Glur3 Bound To Glutamate
Length = 278
Score = 40.8 bits (94), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 23/100 (23%), Positives = 50/100 (50%), Gaps = 8/100 (8%)
Query: 495 VSYRDFVFKVNGTDIVHGYCIDVFLAAVRLLPYAVPYKFIPYGDGH---KNPT---YSEL 548
V Y+ ++ G + GYC+D+ + + + YK GDG ++P ++ +
Sbjct: 33 VMYKKNHEQLEGNERYEGYCVDLAYEIAKHV--RIKYKLSIVGDGKYGARDPETKIWNGM 90
Query: 549 INQITTGVFDAAVGDIAIVTNRTKAVDFTQPYIESGLVVV 588
+ ++ G D AV + I R + +DF++P++ G+ ++
Sbjct: 91 VGELVYGRADIAVAPLTITLVREEVIDFSKPFMSLGISIM 130
Score = 37.7 bits (86), Expect = 0.028, Method: Compositional matrix adjust.
Identities = 17/49 (34%), Positives = 25/49 (51%)
Query: 774 CQFSVRGQEFTKSGWGFAFPRDSPLAIDMSTAILTLSENGELQRIHDKW 822
C G G+G A P+ S L ++ A+L LSE G L ++ +KW
Sbjct: 222 CDTMKVGGNLDSKGYGVATPKGSALGTPVNLAVLKLSEQGILDKLKNKW 270
>pdb|4F2O|A Chain A, Quisqualate Bound To The D655a Mutant Of The Ligand
Binding Domain Of Glua3
pdb|4F2Q|A Chain A, Quisqualate Bound To The D655a Mutant Of The Ligand
Binding Domain Of Glua3
pdb|4F31|B Chain B, Kainate Bound To The D655a Mutant Of The Ligand Binding
Domain Of Glua3
pdb|4F31|D Chain D, Kainate Bound To The D655a Mutant Of The Ligand Binding
Domain Of Glua3
pdb|4F3B|A Chain A, Glutamate Bound To The D655a Mutant Of The Ligand Binding
Domain Of Glua3
Length = 258
Score = 40.4 bits (93), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 23/100 (23%), Positives = 50/100 (50%), Gaps = 8/100 (8%)
Query: 495 VSYRDFVFKVNGTDIVHGYCIDVFLAAVRLLPYAVPYKFIPYGDGH---KNPT---YSEL 548
V Y+ ++ G + GYC+D+ + + + YK GDG ++P ++ +
Sbjct: 14 VMYKKNHEQLEGNERYEGYCVDLAYEIAKHV--RIKYKLSIVGDGKYGARDPETKIWNGM 71
Query: 549 INQITTGVFDAAVGDIAIVTNRTKAVDFTQPYIESGLVVV 588
+ ++ G D AV + I R + +DF++P++ G+ ++
Sbjct: 72 VGELVYGRADIAVAPLTITLVREEVIDFSKPFMSLGISIM 111
Score = 35.8 bits (81), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 16/49 (32%), Positives = 25/49 (51%)
Query: 774 CQFSVRGQEFTKSGWGFAFPRDSPLAIDMSTAILTLSENGELQRIHDKW 822
C G G+G A P+ S L ++ A+L L+E G L ++ +KW
Sbjct: 203 CDTMKVGGNLDSKGYGVATPKGSALGNAVNLAVLKLNEQGLLDKLKNKW 251
>pdb|3M3F|A Chain A, Pepa Bound To The Ligand Binding Domain Of Glua3 (Flop
Form)
pdb|3M3K|A Chain A, Ligand Binding Domain (S1s2) Of Glua3 (Flop)
pdb|3M3K|C Chain C, Ligand Binding Domain (S1s2) Of Glua3 (Flop)
pdb|3M3K|E Chain E, Ligand Binding Domain (S1s2) Of Glua3 (Flop)
pdb|4F1Y|A Chain A, Cnqx Bound To The Ligand Binding Domain Of Glua3
pdb|4F1Y|C Chain C, Cnqx Bound To The Ligand Binding Domain Of Glua3
Length = 258
Score = 40.4 bits (93), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 23/100 (23%), Positives = 50/100 (50%), Gaps = 8/100 (8%)
Query: 495 VSYRDFVFKVNGTDIVHGYCIDVFLAAVRLLPYAVPYKFIPYGDGH---KNPT---YSEL 548
V Y+ ++ G + GYC+D+ + + + YK GDG ++P ++ +
Sbjct: 14 VMYKKNHEQLEGNERYEGYCVDLAYEIAKHV--RIKYKLSIVGDGKYGARDPETKIWNGM 71
Query: 549 INQITTGVFDAAVGDIAIVTNRTKAVDFTQPYIESGLVVV 588
+ ++ G D AV + I R + +DF++P++ G+ ++
Sbjct: 72 VGELVYGRADIAVAPLTITLVREEVIDFSKPFMSLGISIM 111
Score = 35.8 bits (81), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 16/49 (32%), Positives = 25/49 (51%)
Query: 774 CQFSVRGQEFTKSGWGFAFPRDSPLAIDMSTAILTLSENGELQRIHDKW 822
C G G+G A P+ S L ++ A+L L+E G L ++ +KW
Sbjct: 203 CDTMKVGGNLDSKGYGVATPKGSALGNAVNLAVLKLNEQGLLDKLKNKW 251
>pdb|3LSW|A Chain A, Aniracetam Bound To The Ligand Binding Domain Of Glua3
pdb|3LSX|A Chain A, Piracetam Bound To The Ligand Binding Domain Of Glua3
pdb|3RT6|B Chain B, Fluorowillardiine Bound To The Ligand Binding Domain Of
Glua3
pdb|3RT8|A Chain A, Chlorowillardiine Bound To The Ligand Binding Domain Of
Glua3
pdb|4F29|A Chain A, Quisqualate Bound To The Ligand Binding Domain Of Glua3i
pdb|4F39|A Chain A, Kainate Bound To The Ligand Binding Domain Of Glua3
pdb|4F3G|A Chain A, Kainate Bound To The Ligand Binding Domain Of Glua3i
Length = 258
Score = 40.4 bits (93), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 23/100 (23%), Positives = 50/100 (50%), Gaps = 8/100 (8%)
Query: 495 VSYRDFVFKVNGTDIVHGYCIDVFLAAVRLLPYAVPYKFIPYGDGH---KNPT---YSEL 548
V Y+ ++ G + GYC+D+ + + + YK GDG ++P ++ +
Sbjct: 14 VMYKKNHEQLEGNERYEGYCVDLAYEIAKHV--RIKYKLSIVGDGKYGARDPETKIWNGM 71
Query: 549 INQITTGVFDAAVGDIAIVTNRTKAVDFTQPYIESGLVVV 588
+ ++ G D AV + I R + +DF++P++ G+ ++
Sbjct: 72 VGELVYGRADIAVAPLTITLVREEVIDFSKPFMSLGISIM 111
Score = 37.7 bits (86), Expect = 0.032, Method: Compositional matrix adjust.
Identities = 17/49 (34%), Positives = 25/49 (51%)
Query: 774 CQFSVRGQEFTKSGWGFAFPRDSPLAIDMSTAILTLSENGELQRIHDKW 822
C G G+G A P+ S L ++ A+L LSE G L ++ +KW
Sbjct: 203 CDTMKVGGNLDSKGYGVATPKGSALGTPVNLAVLKLSEQGILDKLKNKW 251
>pdb|4F22|A Chain A, Kainate Bound To The K660a Mutant Of The Ligand Binding
Domain Of Glua3
Length = 258
Score = 40.4 bits (93), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 23/100 (23%), Positives = 50/100 (50%), Gaps = 8/100 (8%)
Query: 495 VSYRDFVFKVNGTDIVHGYCIDVFLAAVRLLPYAVPYKFIPYGDGH---KNPT---YSEL 548
V Y+ ++ G + GYC+D+ + + + YK GDG ++P ++ +
Sbjct: 14 VMYKKNHEQLEGNERYEGYCVDLAYEIAKHV--RIKYKLSIVGDGKYGARDPETKIWNGM 71
Query: 549 INQITTGVFDAAVGDIAIVTNRTKAVDFTQPYIESGLVVV 588
+ ++ G D AV + I R + +DF++P++ G+ ++
Sbjct: 72 VGELVYGRADIAVAPLTITLVREEVIDFSKPFMSLGISIM 111
Score = 37.7 bits (86), Expect = 0.034, Method: Compositional matrix adjust.
Identities = 17/49 (34%), Positives = 25/49 (51%)
Query: 774 CQFSVRGQEFTKSGWGFAFPRDSPLAIDMSTAILTLSENGELQRIHDKW 822
C G G+G A P+ S L ++ A+L LSE G L ++ +KW
Sbjct: 203 CDTMKVGGNLDSKGYGVATPKGSALGTPVNLAVLKLSEQGILDKLKNKW 251
>pdb|3T9X|B Chain B, Glutamate Bound To A Double Cysteine Mutant (V484cE657C)
OF THE Ligand Binding Domain Of Glua2
pdb|3T9X|D Chain D, Glutamate Bound To A Double Cysteine Mutant (V484cE657C)
OF THE Ligand Binding Domain Of Glua2
pdb|3T9X|F Chain F, Glutamate Bound To A Double Cysteine Mutant (V484cE657C)
OF THE Ligand Binding Domain Of Glua2
Length = 258
Score = 40.0 bits (92), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 22/91 (24%), Positives = 42/91 (46%), Gaps = 8/91 (8%)
Query: 504 VNGTDIVHGYCIDVFLAAVRLLPYAVPYKFIPYGDGH------KNPTYSELINQITTGVF 557
+ G + GYC+D LAA YK GDG ++ ++ ++ G
Sbjct: 23 LEGNERYEGYCVD--LAAEIAKHCGFKYKLTIVGDGKYGARDADTKIWNGMVGELVYGKA 80
Query: 558 DAAVGDIAIVTNRTKAVDFTQPYIESGLVVV 588
D A+ + I R + +DF++P++ G+ ++
Sbjct: 81 DIAIAPLTITLCREEVIDFSKPFMSLGISIM 111
Score = 36.6 bits (83), Expect = 0.074, Method: Compositional matrix adjust.
Identities = 22/80 (27%), Positives = 35/80 (43%), Gaps = 9/80 (11%)
Query: 743 SPEEYAIALENRTVAAVVDERPYIDLFLSDHCQFSVRGQEFTKSGWGFAFPRDSPLAIDM 802
S +YA LE+ + +P C G G+G A P+ S L +
Sbjct: 181 SKGKYAYLLESTMNEYIEQRKP---------CDTMKVGGNLDSKGYGIATPKGSSLGNAV 231
Query: 803 STAILTLSENGELQRIHDKW 822
+ A+L L+E G L ++ +KW
Sbjct: 232 NLAVLKLNEQGLLDKLKNKW 251
>pdb|2ANJ|A Chain A, Crystal Structure Of The Glur2 Ligand Binding Core (S1s2j-
Y450w) Mutant In Complex With The Partial Agonist Kainic
Acid At 2.1 A Resolution
Length = 263
Score = 39.7 bits (91), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 22/91 (24%), Positives = 42/91 (46%), Gaps = 8/91 (8%)
Query: 504 VNGTDIVHGYCIDVFLAAVRLLPYAVPYKFIPYGDGH------KNPTYSELINQITTGVF 557
+ G + GYC+D LAA YK GDG ++ ++ ++ G
Sbjct: 26 LEGNERYEGYCVD--LAAEIAKHCGFKYKLTIVGDGKWGARDADTKIWNGMVGELVYGKA 83
Query: 558 DAAVGDIAIVTNRTKAVDFTQPYIESGLVVV 588
D A+ + I R + +DF++P++ G+ ++
Sbjct: 84 DIAIAPLTITLVREEVIDFSKPFMSLGISIM 114
Score = 36.6 bits (83), Expect = 0.073, Method: Compositional matrix adjust.
Identities = 22/80 (27%), Positives = 35/80 (43%), Gaps = 9/80 (11%)
Query: 743 SPEEYAIALENRTVAAVVDERPYIDLFLSDHCQFSVRGQEFTKSGWGFAFPRDSPLAIDM 802
S +YA LE+ + +P C G G+G A P+ S L +
Sbjct: 184 SKGKYAYLLESTMNEYIEQRKP---------CDTMKVGGNLDSKGYGIATPKGSSLGNAV 234
Query: 803 STAILTLSENGELQRIHDKW 822
+ A+L L+E G L ++ +KW
Sbjct: 235 NLAVLKLNEQGLLDKLKNKW 254
>pdb|2GFE|A Chain A, Crystal Structure Of The Glur2 A476e S673d Ligand Binding
Core Mutant At 1.54 Angstroms Resolution
pdb|2GFE|B Chain B, Crystal Structure Of The Glur2 A476e S673d Ligand Binding
Core Mutant At 1.54 Angstroms Resolution
pdb|2GFE|C Chain C, Crystal Structure Of The Glur2 A476e S673d Ligand Binding
Core Mutant At 1.54 Angstroms Resolution
Length = 262
Score = 39.7 bits (91), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 22/91 (24%), Positives = 42/91 (46%), Gaps = 8/91 (8%)
Query: 504 VNGTDIVHGYCIDVFLAAVRLLPYAVPYKFIPYGDG------HKNPTYSELINQITTGVF 557
+ G + GYC+D LAA YK GDG ++ ++ ++ G
Sbjct: 26 LEGNERYEGYCVD--LAAEIAKHCGFKYKLTIVGDGKYGARDEDTKIWNGMVGELVYGKA 83
Query: 558 DAAVGDIAIVTNRTKAVDFTQPYIESGLVVV 588
D A+ + I R + +DF++P++ G+ ++
Sbjct: 84 DIAIAPLTITLVREEVIDFSKPFMSLGISIM 114
Score = 36.6 bits (83), Expect = 0.075, Method: Compositional matrix adjust.
Identities = 22/80 (27%), Positives = 35/80 (43%), Gaps = 9/80 (11%)
Query: 743 SPEEYAIALENRTVAAVVDERPYIDLFLSDHCQFSVRGQEFTKSGWGFAFPRDSPLAIDM 802
S +YA LE+ + +P C G G+G A P+ S L +
Sbjct: 184 SKGKYAYLLESTMNEYIEQRKP---------CDTMKVGGNLDSKGYGIATPKGSSLGNAV 234
Query: 803 STAILTLSENGELQRIHDKW 822
+ A+L L+E G L ++ +KW
Sbjct: 235 NLAVLKLNEQGLLDKLKNKW 254
>pdb|3RNN|A Chain A, Crystal Structure Of Iglur2 Ligand Binding Domain With
Symmetric Sulfonamide Containing Potentiator
pdb|3RNN|B Chain B, Crystal Structure Of Iglur2 Ligand Binding Domain With
Symmetric Sulfonamide Containing Potentiator
pdb|3RNN|C Chain C, Crystal Structure Of Iglur2 Ligand Binding Domain With
Symmetric Sulfonamide Containing Potentiator
Length = 292
Score = 39.7 bits (91), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 22/91 (24%), Positives = 42/91 (46%), Gaps = 8/91 (8%)
Query: 504 VNGTDIVHGYCIDVFLAAVRLLPYAVPYKFIPYGDGH------KNPTYSELINQITTGVF 557
+ G + GYC+D LAA YK GDG ++ ++ ++ G
Sbjct: 39 LEGNERYEGYCVD--LAAEIAKHCGFKYKLTIVGDGKYGARDADTKIWNGMVGELVYGKA 96
Query: 558 DAAVGDIAIVTNRTKAVDFTQPYIESGLVVV 588
D A+ + I R + +DF++P++ G+ ++
Sbjct: 97 DIAIAPLTITLVREEVIDFSKPFMSLGISIM 127
Score = 36.6 bits (83), Expect = 0.064, Method: Compositional matrix adjust.
Identities = 22/80 (27%), Positives = 35/80 (43%), Gaps = 9/80 (11%)
Query: 743 SPEEYAIALENRTVAAVVDERPYIDLFLSDHCQFSVRGQEFTKSGWGFAFPRDSPLAIDM 802
S +YA LE+ + +P C G G+G A P+ S L +
Sbjct: 197 SKGKYAYLLESTMNEYIEQRKP---------CDTMKVGGNLDSKGYGIATPKGSSLGNAV 247
Query: 803 STAILTLSENGELQRIHDKW 822
+ A+L L+E G L ++ +KW
Sbjct: 248 NLAVLKLNEQGLLDKLKNKW 267
>pdb|1M5D|A Chain A, X-ray Structure Of The Glur2 Ligand Binding Core (s1s2j-
Y702f) In Complex With Br-hibo At 1.73 A Resolution
pdb|1M5F|A Chain A, X-ray Structure Of The Glur2 Ligand Binding Core (s1s2j-
Y702f) In Complex With Acpa At 1.95 A Resolution
pdb|1M5F|B Chain B, X-ray Structure Of The Glur2 Ligand Binding Core (s1s2j-
Y702f) In Complex With Acpa At 1.95 A Resolution
pdb|1M5F|C Chain C, X-ray Structure Of The Glur2 Ligand Binding Core (s1s2j-
Y702f) In Complex With Acpa At 1.95 A Resolution
pdb|1SYI|A Chain A, X-Ray Structure Of The Y702f Mutant Of The Glur2 Ligand-
Binding Core (S1s2j) In Complex With (S)-Cpw399 At 2.1 A
Resolution.
pdb|1SYI|B Chain B, X-Ray Structure Of The Y702f Mutant Of The Glur2 Ligand-
Binding Core (S1s2j) In Complex With (S)-Cpw399 At 2.1 A
Resolution.
pdb|1XHY|A Chain A, X-ray Structure Of The Y702f Mutant Of The Glur2
Ligand-binding Core (s1s2j) In Complex With Kainate At
1.85 A Resolution
Length = 263
Score = 39.7 bits (91), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 22/91 (24%), Positives = 42/91 (46%), Gaps = 8/91 (8%)
Query: 504 VNGTDIVHGYCIDVFLAAVRLLPYAVPYKFIPYGDGH------KNPTYSELINQITTGVF 557
+ G + GYC+D LAA YK GDG ++ ++ ++ G
Sbjct: 26 LEGNERYEGYCVD--LAAEIAKHCGFKYKLTIVGDGKYGARDADTKIWNGMVGELVYGKA 83
Query: 558 DAAVGDIAIVTNRTKAVDFTQPYIESGLVVV 588
D A+ + I R + +DF++P++ G+ ++
Sbjct: 84 DIAIAPLTITLVREEVIDFSKPFMSLGISIM 114
Score = 37.0 bits (84), Expect = 0.054, Method: Compositional matrix adjust.
Identities = 22/80 (27%), Positives = 35/80 (43%), Gaps = 9/80 (11%)
Query: 743 SPEEYAIALENRTVAAVVDERPYIDLFLSDHCQFSVRGQEFTKSGWGFAFPRDSPLAIDM 802
S +YA LE+ + +P C G G+G A P+ S L +
Sbjct: 184 SKGKYAFLLESTMNEYIEQRKP---------CDTMKVGGNLDSKGYGIATPKGSSLGNAV 234
Query: 803 STAILTLSENGELQRIHDKW 822
+ A+L L+E G L ++ +KW
Sbjct: 235 NLAVLKLNEQGLLDKLKNKW 254
>pdb|3RN8|A Chain A, Crystal Structure Of Iglur2 Ligand Binding Domain And
Symmetrical Carboxyl Containing Potentiator
pdb|3RN8|B Chain B, Crystal Structure Of Iglur2 Ligand Binding Domain And
Symmetrical Carboxyl Containing Potentiator
pdb|3RN8|C Chain C, Crystal Structure Of Iglur2 Ligand Binding Domain And
Symmetrical Carboxyl Containing Potentiator
Length = 280
Score = 39.7 bits (91), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 22/91 (24%), Positives = 42/91 (46%), Gaps = 8/91 (8%)
Query: 504 VNGTDIVHGYCIDVFLAAVRLLPYAVPYKFIPYGDGH------KNPTYSELINQITTGVF 557
+ G + GYC+D LAA YK GDG ++ ++ ++ G
Sbjct: 27 LEGNERYEGYCVD--LAAEIAKHCGFKYKLTIVGDGKYGARDADTKIWNGMVGELVYGKA 84
Query: 558 DAAVGDIAIVTNRTKAVDFTQPYIESGLVVV 588
D A+ + I R + +DF++P++ G+ ++
Sbjct: 85 DIAIAPLTITLVREEVIDFSKPFMSLGISIM 115
Score = 36.6 bits (83), Expect = 0.067, Method: Compositional matrix adjust.
Identities = 22/80 (27%), Positives = 35/80 (43%), Gaps = 9/80 (11%)
Query: 743 SPEEYAIALENRTVAAVVDERPYIDLFLSDHCQFSVRGQEFTKSGWGFAFPRDSPLAIDM 802
S +YA LE+ + +P C G G+G A P+ S L +
Sbjct: 185 SKGKYAYLLESTMNEYIEQRKP---------CDTMKVGGNLDSKGYGIATPKGSSLGNAV 235
Query: 803 STAILTLSENGELQRIHDKW 822
+ A+L L+E G L ++ +KW
Sbjct: 236 NLAVLKLNEQGLLDKLKNKW 255
>pdb|2I3V|A Chain A, Measurement Of Conformational Changes Accompanying
Desensitization In An Ionotropic Glutamate Receptor:
Structure Of G725c Mutant
pdb|2I3V|B Chain B, Measurement Of Conformational Changes Accompanying
Desensitization In An Ionotropic Glutamate Receptor:
Structure Of G725c Mutant
pdb|2I3V|C Chain C, Measurement Of Conformational Changes Accompanying
Desensitization In An Ionotropic Glutamate Receptor:
Structure Of G725c Mutant
pdb|2I3V|D Chain D, Measurement Of Conformational Changes Accompanying
Desensitization In An Ionotropic Glutamate Receptor:
Structure Of G725c Mutant
Length = 259
Score = 39.3 bits (90), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 22/91 (24%), Positives = 42/91 (46%), Gaps = 8/91 (8%)
Query: 504 VNGTDIVHGYCIDVFLAAVRLLPYAVPYKFIPYGDGH------KNPTYSELINQITTGVF 557
+ G + GYC+D LAA YK GDG ++ ++ ++ G
Sbjct: 24 LEGNERYEGYCVD--LAAEIAKHCGFKYKLTIVGDGKYGARDADTKIWNGMVGELVYGKA 81
Query: 558 DAAVGDIAIVTNRTKAVDFTQPYIESGLVVV 588
D A+ + I R + +DF++P++ G+ ++
Sbjct: 82 DIAIAPLTITLVREEVIDFSKPFMSLGISIM 112
Score = 36.2 bits (82), Expect = 0.081, Method: Compositional matrix adjust.
Identities = 22/80 (27%), Positives = 35/80 (43%), Gaps = 9/80 (11%)
Query: 743 SPEEYAIALENRTVAAVVDERPYIDLFLSDHCQFSVRGQEFTKSGWGFAFPRDSPLAIDM 802
S +YA LE+ + +P C G G+G A P+ S L +
Sbjct: 182 SKGKYAYLLESTMNEYIEQRKP---------CDTMKVGCNLDSKGYGIATPKGSSLGNAV 232
Query: 803 STAILTLSENGELQRIHDKW 822
+ A+L L+E G L ++ +KW
Sbjct: 233 NLAVLKLNEQGLLDKLKNKW 252
>pdb|3R7X|A Chain A, Crystal Structure Analysis Of A Quinazolinedione
Sulfonamide Bound To Human Glur2: A Novel Class Of
Competitive Ampa Receptor Antagonists With Oral Activity
pdb|3R7X|B Chain B, Crystal Structure Analysis Of A Quinazolinedione
Sulfonamide Bound To Human Glur2: A Novel Class Of
Competitive Ampa Receptor Antagonists With Oral Activity
pdb|3UA8|A Chain A, Crystal Structure Analysis Of A 6-Amino Quinazolinedione
Sulfonamide Bound To Human Glur2
Length = 263
Score = 39.3 bits (90), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 22/91 (24%), Positives = 42/91 (46%), Gaps = 8/91 (8%)
Query: 504 VNGTDIVHGYCIDVFLAAVRLLPYAVPYKFIPYGDGH------KNPTYSELINQITTGVF 557
+ G + GYC+D LAA YK GDG ++ ++ ++ G
Sbjct: 26 LEGNERYEGYCVD--LAAEIAKHCGFKYKLTIVGDGKYGARDADTKIWNGMVGELVYGKA 83
Query: 558 DAAVGDIAIVTNRTKAVDFTQPYIESGLVVV 588
D A+ + I R + +DF++P++ G+ ++
Sbjct: 84 DIAIAPLTITLVREEVIDFSKPFMSLGISIM 114
Score = 35.8 bits (81), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 22/80 (27%), Positives = 35/80 (43%), Gaps = 9/80 (11%)
Query: 743 SPEEYAIALENRTVAAVVDERPYIDLFLSDHCQFSVRGQEFTKSGWGFAFPRDSPLAIDM 802
S +YA LE+ + +P C G G+G A P+ S L +
Sbjct: 184 SKGKYAYLLESTMNEYIEQRKP---------CDTMKVGGNLDSKGYGIATPKGSSLRNAV 234
Query: 803 STAILTLSENGELQRIHDKW 822
+ A+L L+E G L ++ +KW
Sbjct: 235 NLAVLKLNEQGLLDKLKNKW 254
>pdb|3IJO|B Chain B, Crystal Structure Of The Ampa Subunit Glur2 Bound To The
Allosteric Modulator, Althiazide
pdb|3IJO|E Chain E, Crystal Structure Of The Ampa Subunit Glur2 Bound To The
Allosteric Modulator, Althiazide
pdb|3IJO|H Chain H, Crystal Structure Of The Ampa Subunit Glur2 Bound To The
Allosteric Modulator, Althiazide
pdb|3IJX|B Chain B, Crystal Structure Of The Ampa Subunit Glur2 Bound To The
Allosteric Modulator, Hydrochlorothiazide
pdb|3IJX|D Chain D, Crystal Structure Of The Ampa Subunit Glur2 Bound To The
Allosteric Modulator, Hydrochlorothiazide
pdb|3IJX|H Chain H, Crystal Structure Of The Ampa Subunit Glur2 Bound To The
Allosteric Modulator, Hydrochlorothiazide
pdb|3IK6|B Chain B, Crystal Structure Of The Ampa Subunit Glur2 Bound To The
Allosteric Modulator, Chlorothiazide
pdb|3IK6|E Chain E, Crystal Structure Of The Ampa Subunit Glur2 Bound To The
Allosteric Modulator, Chlorothiazide
pdb|3IK6|H Chain H, Crystal Structure Of The Ampa Subunit Glur2 Bound To The
Allosteric Modulator, Chlorothiazide
pdb|3IL1|B Chain B, Crystal Structure Of The Ampa Subunit Glur2 Bound To The
Allosteric Modulator, Idra-21
pdb|3IL1|E Chain E, Crystal Structure Of The Ampa Subunit Glur2 Bound To The
Allosteric Modulator, Idra-21
pdb|3IL1|H Chain H, Crystal Structure Of The Ampa Subunit Glur2 Bound To The
Allosteric Modulator, Idra-21
pdb|3ILT|B Chain B, Crystal Structure Of The Ampa Subunit Glur2 Bound To The
Allosteric Modulator, Trichlormethiazide
pdb|3ILT|E Chain E, Crystal Structure Of The Ampa Subunit Glur2 Bound To The
Allosteric Modulator, Trichlormethiazide
pdb|3ILT|H Chain H, Crystal Structure Of The Ampa Subunit Glur2 Bound To The
Allosteric Modulator, Trichlormethiazide
pdb|3ILU|B Chain B, Crystal Structure Of The Ampa Subunit Glur2 Bound To The
Allosteric Modulator, Hydroflumethiazide
pdb|3ILU|E Chain E, Crystal Structure Of The Ampa Subunit Glur2 Bound To The
Allosteric Modulator, Hydroflumethiazide
pdb|3ILU|H Chain H, Crystal Structure Of The Ampa Subunit Glur2 Bound To The
Allosteric Modulator, Hydroflumethiazide
pdb|3LSF|B Chain B, Piracetam Bound To The Ligand Binding Domain Of Glua2
pdb|3LSF|E Chain E, Piracetam Bound To The Ligand Binding Domain Of Glua2
pdb|3LSF|H Chain H, Piracetam Bound To The Ligand Binding Domain Of Glua2
Length = 258
Score = 39.3 bits (90), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 22/91 (24%), Positives = 42/91 (46%), Gaps = 8/91 (8%)
Query: 504 VNGTDIVHGYCIDVFLAAVRLLPYAVPYKFIPYGDGH------KNPTYSELINQITTGVF 557
+ G + GYC+D LAA YK GDG ++ ++ ++ G
Sbjct: 23 LEGNERYEGYCVD--LAAEIAKHCGFKYKLTIVGDGKYGARDADTKIWNGMVGELVYGKA 80
Query: 558 DAAVGDIAIVTNRTKAVDFTQPYIESGLVVV 588
D A+ + I R + +DF++P++ G+ ++
Sbjct: 81 DIAIAPLTITLVREEVIDFSKPFMSLGISIM 111
Score = 37.7 bits (86), Expect = 0.031, Method: Compositional matrix adjust.
Identities = 23/80 (28%), Positives = 35/80 (43%), Gaps = 9/80 (11%)
Query: 743 SPEEYAIALENRTVAAVVDERPYIDLFLSDHCQFSVRGQEFTKSGWGFAFPRDSPLAIDM 802
S +YA LE+ + +P C G G+G A P+ S L +
Sbjct: 181 SKGKYAYLLESTMNEYIEQRKP---------CDTMKVGGNLDSKGYGIATPKGSSLGNAV 231
Query: 803 STAILTLSENGELQRIHDKW 822
+ A+L LSE G L ++ +KW
Sbjct: 232 NLAVLKLSEQGLLDKLKNKW 251
>pdb|3H03|A Chain A, Crystal Structure Of The Binding Domain Of The Ampa
Subunit Glur2 Bound To Ubp277
pdb|3H03|B Chain B, Crystal Structure Of The Binding Domain Of The Ampa
Subunit Glur2 Bound To Ubp277
pdb|3H03|D Chain D, Crystal Structure Of The Binding Domain Of The Ampa
Subunit Glur2 Bound To Ubp277
pdb|3H03|G Chain G, Crystal Structure Of The Binding Domain Of The Ampa
Subunit Glur2 Bound To Ubp277
pdb|3H06|G Chain G, Crystal Structure Of The Binding Domain Of The Ampa
Subunit Glur2 Bound To The Willardiine Antagonist,
Ubp282
pdb|3H06|B Chain B, Crystal Structure Of The Binding Domain Of The Ampa
Subunit Glur2 Bound To The Willardiine Antagonist,
Ubp282
pdb|3H06|E Chain E, Crystal Structure Of The Binding Domain Of The Ampa
Subunit Glur2 Bound To The Willardiine Antagonist,
Ubp282
pdb|3H06|H Chain H, Crystal Structure Of The Binding Domain Of The Ampa
Subunit Glur2 Bound To The Willardiine Antagonist,
Ubp282
pdb|3H06|J Chain J, Crystal Structure Of The Binding Domain Of The Ampa
Subunit Glur2 Bound To The Willardiine Antagonist,
Ubp282
pdb|3H06|L Chain L, Crystal Structure Of The Binding Domain Of The Ampa
Subunit Glur2 Bound To The Willardiine Antagonist,
Ubp282
pdb|3H06|N Chain N, Crystal Structure Of The Binding Domain Of The Ampa
Subunit Glur2 Bound To The Willardiine Antagonist,
Ubp282
pdb|3H06|P Chain P, Crystal Structure Of The Binding Domain Of The Ampa
Subunit Glur2 Bound To The Willardiine Antagonist,
Ubp282
pdb|3LSL|A Chain A, Piracetam Bound To The Ligand Binding Domain Of Glua2
(Flop Form)
pdb|3LSL|D Chain D, Piracetam Bound To The Ligand Binding Domain Of Glua2
(Flop Form)
pdb|3LSL|G Chain G, Piracetam Bound To The Ligand Binding Domain Of Glua2
(Flop Form)
pdb|3M3L|A Chain A, Pepa Bound To The Ligand Binding Domain Of Glua2 (Flop
Form)
pdb|3M3L|D Chain D, Pepa Bound To The Ligand Binding Domain Of Glua2 (Flop
Form)
pdb|3M3L|G Chain G, Pepa Bound To The Ligand Binding Domain Of Glua2 (Flop
Form)
pdb|3RTF|B Chain B, Chlorowillardiine Bound To The Ligand Binding Domain Of
Glua2
pdb|3RTF|D Chain D, Chlorowillardiine Bound To The Ligand Binding Domain Of
Glua2
pdb|3RTF|F Chain F, Chlorowillardiine Bound To The Ligand Binding Domain Of
Glua2
pdb|3RTW|B Chain B, Nitrowillardiine Bound To The Ligand Binding Domain Of
Glua2
pdb|3RTW|D Chain D, Nitrowillardiine Bound To The Ligand Binding Domain Of
Glua2
pdb|3RTW|F Chain F, Nitrowillardiine Bound To The Ligand Binding Domain Of
Glua2
pdb|4GXS|B Chain B, Ligand Binding Domain Of Glua2 (AmpaGLUTAMATE RECEPTOR)
BOUND TO (-)- Kaitocephalin
pdb|4GXS|D Chain D, Ligand Binding Domain Of Glua2 (AmpaGLUTAMATE RECEPTOR)
BOUND TO (-)- Kaitocephalin
Length = 258
Score = 39.3 bits (90), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 22/91 (24%), Positives = 42/91 (46%), Gaps = 8/91 (8%)
Query: 504 VNGTDIVHGYCIDVFLAAVRLLPYAVPYKFIPYGDGH------KNPTYSELINQITTGVF 557
+ G + GYC+D LAA YK GDG ++ ++ ++ G
Sbjct: 23 LEGNERYEGYCVD--LAAEIAKHCGFKYKLTIVGDGKYGARDADTKIWNGMVGELVYGKA 80
Query: 558 DAAVGDIAIVTNRTKAVDFTQPYIESGLVVV 588
D A+ + I R + +DF++P++ G+ ++
Sbjct: 81 DIAIAPLTITLVREEVIDFSKPFMSLGISIM 111
Score = 36.6 bits (83), Expect = 0.074, Method: Compositional matrix adjust.
Identities = 22/80 (27%), Positives = 35/80 (43%), Gaps = 9/80 (11%)
Query: 743 SPEEYAIALENRTVAAVVDERPYIDLFLSDHCQFSVRGQEFTKSGWGFAFPRDSPLAIDM 802
S +YA LE+ + +P C G G+G A P+ S L +
Sbjct: 181 SKGKYAYLLESTMNEYIEQRKP---------CDTMKVGGNLDSKGYGIATPKGSSLGNAV 231
Query: 803 STAILTLSENGELQRIHDKW 822
+ A+L L+E G L ++ +KW
Sbjct: 232 NLAVLKLNEQGLLDKLKNKW 251
>pdb|3B6W|C Chain C, Crystal Structure Of The Glur2 Ligand Binding Core (S1s2j)
T686s Mutant In Complex With Glutamate At 1.7 Resolution
pdb|3B6W|D Chain D, Crystal Structure Of The Glur2 Ligand Binding Core (S1s2j)
T686s Mutant In Complex With Glutamate At 1.7 Resolution
pdb|3B6W|A Chain A, Crystal Structure Of The Glur2 Ligand Binding Core (S1s2j)
T686s Mutant In Complex With Glutamate At 1.7 Resolution
pdb|3B6W|B Chain B, Crystal Structure Of The Glur2 Ligand Binding Core (S1s2j)
T686s Mutant In Complex With Glutamate At 1.7 Resolution
Length = 263
Score = 39.3 bits (90), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 22/91 (24%), Positives = 42/91 (46%), Gaps = 8/91 (8%)
Query: 504 VNGTDIVHGYCIDVFLAAVRLLPYAVPYKFIPYGDGH------KNPTYSELINQITTGVF 557
+ G + GYC+D LAA YK GDG ++ ++ ++ G
Sbjct: 26 LEGNERYEGYCVD--LAAEIAKHCGFKYKLTIVGDGKYGARDADTKIWNGMVGELVYGKA 83
Query: 558 DAAVGDIAIVTNRTKAVDFTQPYIESGLVVV 588
D A+ + I R + +DF++P++ G+ ++
Sbjct: 84 DIAIAPLTITLVREEVIDFSKPFMSLGISIM 114
Score = 36.6 bits (83), Expect = 0.072, Method: Compositional matrix adjust.
Identities = 22/80 (27%), Positives = 35/80 (43%), Gaps = 9/80 (11%)
Query: 743 SPEEYAIALENRTVAAVVDERPYIDLFLSDHCQFSVRGQEFTKSGWGFAFPRDSPLAIDM 802
S +YA LE+ + +P C G G+G A P+ S L +
Sbjct: 184 SKGKYAYLLESTMNEYIEQRKP---------CDTMKVGGNLDSKGYGIATPKGSSLGNAV 234
Query: 803 STAILTLSENGELQRIHDKW 822
+ A+L L+E G L ++ +KW
Sbjct: 235 NLAVLKLNEQGLLDKLKNKW 254
>pdb|1MQD|A Chain A, X-Ray Structure Of The Glur2 Ligand-Binding Core (S1s2j)
In Complex With (S)-Des-Me-Ampa At 1.46 A Resolution.
Crystallization In The Presence Of Lithium Sulfate.
pdb|1MQD|B Chain B, X-Ray Structure Of The Glur2 Ligand-Binding Core (S1s2j)
In Complex With (S)-Des-Me-Ampa At 1.46 A Resolution.
Crystallization In The Presence Of Lithium Sulfate.
pdb|1MQD|C Chain C, X-Ray Structure Of The Glur2 Ligand-Binding Core (S1s2j)
In Complex With (S)-Des-Me-Ampa At 1.46 A Resolution.
Crystallization In The Presence Of Lithium Sulfate.
pdb|1MQD|D Chain D, X-Ray Structure Of The Glur2 Ligand-Binding Core (S1s2j)
In Complex With (S)-Des-Me-Ampa At 1.46 A Resolution.
Crystallization In The Presence Of Lithium Sulfate.
pdb|3B7D|A Chain A, Crystal Structure Of The Glur2 Ligand Binding Core
(Hs1s2j) In Complex With Cnqx At 2.5 A Resolution
pdb|3B7D|B Chain B, Crystal Structure Of The Glur2 Ligand Binding Core
(Hs1s2j) In Complex With Cnqx At 2.5 A Resolution
pdb|3B7D|C Chain C, Crystal Structure Of The Glur2 Ligand Binding Core
(Hs1s2j) In Complex With Cnqx At 2.5 A Resolution
pdb|3B7D|D Chain D, Crystal Structure Of The Glur2 Ligand Binding Core
(Hs1s2j) In Complex With Cnqx At 2.5 A Resolution
pdb|3B7D|E Chain E, Crystal Structure Of The Glur2 Ligand Binding Core
(Hs1s2j) In Complex With Cnqx At 2.5 A Resolution
pdb|3B7D|F Chain F, Crystal Structure Of The Glur2 Ligand Binding Core
(Hs1s2j) In Complex With Cnqx At 2.5 A Resolution
pdb|3B7D|G Chain G, Crystal Structure Of The Glur2 Ligand Binding Core
(Hs1s2j) In Complex With Cnqx At 2.5 A Resolution
pdb|3B7D|H Chain H, Crystal Structure Of The Glur2 Ligand Binding Core
(Hs1s2j) In Complex With Cnqx At 2.5 A Resolution
Length = 261
Score = 39.3 bits (90), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 22/91 (24%), Positives = 42/91 (46%), Gaps = 8/91 (8%)
Query: 504 VNGTDIVHGYCIDVFLAAVRLLPYAVPYKFIPYGDGH------KNPTYSELINQITTGVF 557
+ G + GYC+D LAA YK GDG ++ ++ ++ G
Sbjct: 26 LEGNERYEGYCVD--LAAEIAKHCGFKYKLTIVGDGKYGARDADTKIWNGMVGELVYGKA 83
Query: 558 DAAVGDIAIVTNRTKAVDFTQPYIESGLVVV 588
D A+ + I R + +DF++P++ G+ ++
Sbjct: 84 DIAIAPLTITLVREEVIDFSKPFMSLGISIM 114
Score = 36.6 bits (83), Expect = 0.067, Method: Compositional matrix adjust.
Identities = 22/80 (27%), Positives = 35/80 (43%), Gaps = 9/80 (11%)
Query: 743 SPEEYAIALENRTVAAVVDERPYIDLFLSDHCQFSVRGQEFTKSGWGFAFPRDSPLAIDM 802
S +YA LE+ + +P C G G+G A P+ S L +
Sbjct: 184 SKGKYAYLLESTMNEYIEQRKP---------CDTMKVGGNLDSKGYGIATPKGSSLGNAV 234
Query: 803 STAILTLSENGELQRIHDKW 822
+ A+L L+E G L ++ +KW
Sbjct: 235 NLAVLKLNEQGLLDKLKNKW 254
>pdb|1LBC|A Chain A, Crystal Structure Of Glur2 Ligand Binding Core (S1s2j-
N775s) In Complex With Cyclothiazide (Ctz) As Well As
Glutamate At 1.8 A Resolution
pdb|1LBC|B Chain B, Crystal Structure Of Glur2 Ligand Binding Core (S1s2j-
N775s) In Complex With Cyclothiazide (Ctz) As Well As
Glutamate At 1.8 A Resolution
pdb|1LBC|C Chain C, Crystal Structure Of Glur2 Ligand Binding Core (S1s2j-
N775s) In Complex With Cyclothiazide (Ctz) As Well As
Glutamate At 1.8 A Resolution
pdb|3H6T|A Chain A, Crystal Structure Of The Iglur2 Ligand-Binding Core
(S1s2j-N754s) In Complex With Glutamate And
Cyclothiazide At 2.25 A Resolution
pdb|3H6T|B Chain B, Crystal Structure Of The Iglur2 Ligand-Binding Core
(S1s2j-N754s) In Complex With Glutamate And
Cyclothiazide At 2.25 A Resolution
pdb|3H6T|C Chain C, Crystal Structure Of The Iglur2 Ligand-Binding Core
(S1s2j-N754s) In Complex With Glutamate And
Cyclothiazide At 2.25 A Resolution
pdb|3H6U|A Chain A, Crystal Structure Of The Iglur2 Ligand-binding Core
(s1s2j-n754s) In Complex With Glutamate And Ns1493 At
1.85 A Resolution
pdb|3H6V|A Chain A, Crystal Structure Of The Iglur2 Ligand-Binding Core
(S1s2j-N754s) In Complex With Glutamate And Ns5206 At
2.10 A Resolution
pdb|3H6V|B Chain B, Crystal Structure Of The Iglur2 Ligand-Binding Core
(S1s2j-N754s) In Complex With Glutamate And Ns5206 At
2.10 A Resolution
pdb|3H6W|A Chain A, Crystal Structure Of The Iglur2 Ligand-Binding Core
(S1s2j-N754s) In Complex With Glutamate And Ns5217 At
1.50 A Resolution
pdb|3H6W|B Chain B, Crystal Structure Of The Iglur2 Ligand-Binding Core
(S1s2j-N754s) In Complex With Glutamate And Ns5217 At
1.50 A Resolution
pdb|3KGC|A Chain A, Isolated Ligand Binding Domain Dimer Of Glua2 Ionotropic
Glutamate Receptor In Complex With Glutamate, Ly 404187
And Zk 200775
pdb|3KGC|B Chain B, Isolated Ligand Binding Domain Dimer Of Glua2 Ionotropic
Glutamate Receptor In Complex With Glutamate, Ly 404187
And Zk 200775
pdb|3BBR|A Chain A, Crystal Structure Of The Iglur2 Ligand Binding Core
(S1s2j-N775s) In Complex With A Dimeric Positive
Modulator As Well As Glutamate At 2.25 A Resolution
pdb|3BBR|B Chain B, Crystal Structure Of The Iglur2 Ligand Binding Core
(S1s2j-N775s) In Complex With A Dimeric Positive
Modulator As Well As Glutamate At 2.25 A Resolution
pdb|2XX9|A Chain A, Crystal Structure Of
1-((2-Fluoro-4-(3-(Trifluoromethyl)-4,5,6,7-
Tetrahydro-1h-Indazol-1-Yl)phenyl)methyl)-2-
Pyrrolidinone In Complex With The Ligand Binding Domain
Of The Rat Glua2 Receptor And Glutamate At 2.2a
Resolution.
pdb|2XX9|B Chain B, Crystal Structure Of
1-((2-Fluoro-4-(3-(Trifluoromethyl)-4,5,6,7-
Tetrahydro-1h-Indazol-1-Yl)phenyl)methyl)-2-
Pyrrolidinone In Complex With The Ligand Binding Domain
Of The Rat Glua2 Receptor And Glutamate At 2.2a
Resolution.
pdb|2XX9|C Chain C, Crystal Structure Of
1-((2-Fluoro-4-(3-(Trifluoromethyl)-4,5,6,7-
Tetrahydro-1h-Indazol-1-Yl)phenyl)methyl)-2-
Pyrrolidinone In Complex With The Ligand Binding Domain
Of The Rat Glua2 Receptor And Glutamate At 2.2a
Resolution.
pdb|2XXH|A Chain A, Crystal Structure Of
1-(4-(2-Oxo-2-(1-Pyrrolidinyl)ethyl)phenyl)-3-
(Trifluoromethyl)-4,5,6,7-Tetrahydro-1h-Indazole In
Complex With The Ligand Binding Domain Of The Rat Glua2
Receptor And Glutamate At 1.5a Resolution.
pdb|2XXH|B Chain B, Crystal Structure Of
1-(4-(2-Oxo-2-(1-Pyrrolidinyl)ethyl)phenyl)-3-
(Trifluoromethyl)-4,5,6,7-Tetrahydro-1h-Indazole In
Complex With The Ligand Binding Domain Of The Rat Glua2
Receptor And Glutamate At 1.5a Resolution.
pdb|2XXH|C Chain C, Crystal Structure Of
1-(4-(2-Oxo-2-(1-Pyrrolidinyl)ethyl)phenyl)-3-
(Trifluoromethyl)-4,5,6,7-Tetrahydro-1h-Indazole In
Complex With The Ligand Binding Domain Of The Rat Glua2
Receptor And Glutamate At 1.5a Resolution.
pdb|2XXI|A Chain A, Crystal Structure Of
1-((4-(3-(Trifluoromethyl)-6,7-Dihydropyrano(4,3
-C(Pyrazol-1(4h)-Yl)phenyl)methyl)-2-Pyrrolidinone In
Complex With The Ligand Binding Domain Of The Rat Glua2
Receptor And Glutamate At 1.6a Resolution.
pdb|2XXI|B Chain B, Crystal Structure Of
1-((4-(3-(Trifluoromethyl)-6,7-Dihydropyrano(4,3
-C(Pyrazol-1(4h)-Yl)phenyl)methyl)-2-Pyrrolidinone In
Complex With The Ligand Binding Domain Of The Rat Glua2
Receptor And Glutamate At 1.6a Resolution.
pdb|2XXI|C Chain C, Crystal Structure Of
1-((4-(3-(Trifluoromethyl)-6,7-Dihydropyrano(4,3
-C(Pyrazol-1(4h)-Yl)phenyl)methyl)-2-Pyrrolidinone In
Complex With The Ligand Binding Domain Of The Rat Glua2
Receptor And Glutamate At 1.6a Resolution.
pdb|2XX8|A Chain A, Crystal Structure Of
N,N-Dimethyl-4-(3-(Trifluoromethyl)-4,
5,6,7-Tetrahydro-1h-Indazol-1-Yl)benzamide In Complex
With The Ligand Binding Domain Of The Rat Glua2 Receptor
And Glutamate At 2.2a Resolution.
pdb|2XX8|B Chain B, Crystal Structure Of
N,N-Dimethyl-4-(3-(Trifluoromethyl)-4,
5,6,7-Tetrahydro-1h-Indazol-1-Yl)benzamide In Complex
With The Ligand Binding Domain Of The Rat Glua2 Receptor
And Glutamate At 2.2a Resolution.
pdb|2XX8|C Chain C, Crystal Structure Of
N,N-Dimethyl-4-(3-(Trifluoromethyl)-4,
5,6,7-Tetrahydro-1h-Indazol-1-Yl)benzamide In Complex
With The Ligand Binding Domain Of The Rat Glua2 Receptor
And Glutamate At 2.2a Resolution
Length = 263
Score = 39.3 bits (90), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 22/91 (24%), Positives = 42/91 (46%), Gaps = 8/91 (8%)
Query: 504 VNGTDIVHGYCIDVFLAAVRLLPYAVPYKFIPYGDGH------KNPTYSELINQITTGVF 557
+ G + GYC+D LAA YK GDG ++ ++ ++ G
Sbjct: 26 LEGNERYEGYCVD--LAAEIAKHCGFKYKLTIVGDGKYGARDADTKIWNGMVGELVYGKA 83
Query: 558 DAAVGDIAIVTNRTKAVDFTQPYIESGLVVV 588
D A+ + I R + +DF++P++ G+ ++
Sbjct: 84 DIAIAPLTITLVREEVIDFSKPFMSLGISIM 114
Score = 37.7 bits (86), Expect = 0.029, Method: Compositional matrix adjust.
Identities = 23/80 (28%), Positives = 35/80 (43%), Gaps = 9/80 (11%)
Query: 743 SPEEYAIALENRTVAAVVDERPYIDLFLSDHCQFSVRGQEFTKSGWGFAFPRDSPLAIDM 802
S +YA LE+ + +P C G G+G A P+ S L +
Sbjct: 184 SKGKYAYLLESTMNEYIEQRKP---------CDTMKVGGNLDSKGYGIATPKGSSLGNAV 234
Query: 803 STAILTLSENGELQRIHDKW 822
+ A+L LSE G L ++ +KW
Sbjct: 235 NLAVLKLSEQGLLDKLKNKW 254
>pdb|3PD8|A Chain A, X-Ray Structure Of The Ligand-Binding Core Of Glua2 In
Complex With (S)-7-Hpca At 2.5 A Resolution
pdb|3PD8|B Chain B, X-Ray Structure Of The Ligand-Binding Core Of Glua2 In
Complex With (S)-7-Hpca At 2.5 A Resolution
pdb|3PD8|C Chain C, X-Ray Structure Of The Ligand-Binding Core Of Glua2 In
Complex With (S)-7-Hpca At 2.5 A Resolution
Length = 261
Score = 39.3 bits (90), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 22/91 (24%), Positives = 42/91 (46%), Gaps = 8/91 (8%)
Query: 504 VNGTDIVHGYCIDVFLAAVRLLPYAVPYKFIPYGDGH------KNPTYSELINQITTGVF 557
+ G + GYC+D LAA YK GDG ++ ++ ++ G
Sbjct: 25 LEGNERYEGYCVD--LAAEIAKHCGFKYKLTIVGDGKYGARDADTKIWNGMVGELVYGKA 82
Query: 558 DAAVGDIAIVTNRTKAVDFTQPYIESGLVVV 588
D A+ + I R + +DF++P++ G+ ++
Sbjct: 83 DIAIAPLTITLVREEVIDFSKPFMSLGISIM 113
Score = 36.6 bits (83), Expect = 0.067, Method: Compositional matrix adjust.
Identities = 22/80 (27%), Positives = 35/80 (43%), Gaps = 9/80 (11%)
Query: 743 SPEEYAIALENRTVAAVVDERPYIDLFLSDHCQFSVRGQEFTKSGWGFAFPRDSPLAIDM 802
S +YA LE+ + +P C G G+G A P+ S L +
Sbjct: 183 SKGKYAYLLESTMNEYIEQRKP---------CDTMKVGGNLDSKGYGIATPKGSSLGNAV 233
Query: 803 STAILTLSENGELQRIHDKW 822
+ A+L L+E G L ++ +KW
Sbjct: 234 NLAVLKLNEQGLLDKLKNKW 253
>pdb|3DP6|A Chain A, Crystal Structure Of The Binding Domain Of The Ampa
Subunit Glur2 Bound To Glutamate
pdb|3DP6|B Chain B, Crystal Structure Of The Binding Domain Of The Ampa
Subunit Glur2 Bound To Glutamate
pdb|3DP6|C Chain C, Crystal Structure Of The Binding Domain Of The Ampa
Subunit Glur2 Bound To Glutamate
Length = 279
Score = 39.3 bits (90), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 22/91 (24%), Positives = 42/91 (46%), Gaps = 8/91 (8%)
Query: 504 VNGTDIVHGYCIDVFLAAVRLLPYAVPYKFIPYGDGH------KNPTYSELINQITTGVF 557
+ G + GYC+D LAA YK GDG ++ ++ ++ G
Sbjct: 42 LEGNERYEGYCVD--LAAEIAKHCGFKYKLTIVGDGKYGARDADTKIWNGMVGELVYGKA 99
Query: 558 DAAVGDIAIVTNRTKAVDFTQPYIESGLVVV 588
D A+ + I R + +DF++P++ G+ ++
Sbjct: 100 DIAIAPLTITLVREEVIDFSKPFMSLGISIM 130
Score = 36.6 bits (83), Expect = 0.068, Method: Compositional matrix adjust.
Identities = 22/80 (27%), Positives = 35/80 (43%), Gaps = 9/80 (11%)
Query: 743 SPEEYAIALENRTVAAVVDERPYIDLFLSDHCQFSVRGQEFTKSGWGFAFPRDSPLAIDM 802
S +YA LE+ + +P C G G+G A P+ S L +
Sbjct: 200 SKGKYAYLLESTMNEYIEQRKP---------CDTMKVGGNLDSKGYGIATPKGSSLGNAV 250
Query: 803 STAILTLSENGELQRIHDKW 822
+ A+L L+E G L ++ +KW
Sbjct: 251 NLAVLKLNEQGLLDKLKNKW 270
>pdb|1FW0|A Chain A, Crystal Structure Of The Glur2 Ligand Binding Core (S1s2j)
In Complex With Kainate At 2.0 A Resolution
pdb|1FTJ|A Chain A, Crystal Structure Of The Glur2 Ligand Binding Core (S1s2j)
In Complex With Glutamate At 1.9 Resolution
pdb|1FTJ|B Chain B, Crystal Structure Of The Glur2 Ligand Binding Core (S1s2j)
In Complex With Glutamate At 1.9 Resolution
pdb|1FTJ|C Chain C, Crystal Structure Of The Glur2 Ligand Binding Core (S1s2j)
In Complex With Glutamate At 1.9 Resolution
pdb|1FTL|A Chain A, Crystal Structure Of The Glur2 Ligand Binding Core (S1s2j)
In Complex With The Antagonist Dnqx At 1.8 A Resolution
pdb|1FTL|B Chain B, Crystal Structure Of The Glur2 Ligand Binding Core (S1s2j)
In Complex With The Antagonist Dnqx At 1.8 A Resolution
pdb|1FTM|A Chain A, Crystal Structure Of The Glur2 Ligand Binding Core (S1s2j)
In Complex With Ampa At 1.7 Resolution
pdb|1FTM|B Chain B, Crystal Structure Of The Glur2 Ligand Binding Core (S1s2j)
In Complex With Ampa At 1.7 Resolution
pdb|1FTM|C Chain C, Crystal Structure Of The Glur2 Ligand Binding Core (S1s2j)
In Complex With Ampa At 1.7 Resolution
pdb|1FTO|A Chain A, Crystal Structure Of The Glur2 Ligand Binding Core (S1s2j)
In The Apo State At 2.0 A Resolution
pdb|1FTO|B Chain B, Crystal Structure Of The Glur2 Ligand Binding Core (S1s2j)
In The Apo State At 2.0 A Resolution
pdb|1M5B|A Chain A, X-Ray Structure Of The Glur2 Ligand Binding Core (S1s2j)
In Complex With 2-Me-Tet-Ampa At 1.85 A Resolution.
pdb|1M5B|B Chain B, X-Ray Structure Of The Glur2 Ligand Binding Core (S1s2j)
In Complex With 2-Me-Tet-Ampa At 1.85 A Resolution.
pdb|1M5B|C Chain C, X-Ray Structure Of The Glur2 Ligand Binding Core (S1s2j)
In Complex With 2-Me-Tet-Ampa At 1.85 A Resolution.
pdb|1M5C|A Chain A, X-Ray Structure Of The Glur2 Ligand Binding Core (S1s2j)
In Complex With Br-Hibo At 1.65 A Resolution
pdb|1M5E|A Chain A, X-Ray Structure Of The Glur2 Ligand Binding Core (S1s2j)
In Complex With Acpa At 1.46 A Resolution
pdb|1M5E|B Chain B, X-Ray Structure Of The Glur2 Ligand Binding Core (S1s2j)
In Complex With Acpa At 1.46 A Resolution
pdb|1M5E|C Chain C, X-Ray Structure Of The Glur2 Ligand Binding Core (S1s2j)
In Complex With Acpa At 1.46 A Resolution
pdb|1MM6|A Chain A, Crystal Structure Of The Glur2 Ligand Binding Core (s1s2j)
In Complex With Quisqualate In A Non Zinc Crystal Form
At 2.15 Angstroms Resolution
pdb|1MM6|B Chain B, Crystal Structure Of The Glur2 Ligand Binding Core (s1s2j)
In Complex With Quisqualate In A Non Zinc Crystal Form
At 2.15 Angstroms Resolution
pdb|1MM7|A Chain A, Crystal Structure Of The Glur2 Ligand Binding Core (S1s2j)
In Complex With Quisqualate In A Zinc Crystal Form At
1.65 Angstroms Resolution
pdb|1MM7|B Chain B, Crystal Structure Of The Glur2 Ligand Binding Core (S1s2j)
In Complex With Quisqualate In A Zinc Crystal Form At
1.65 Angstroms Resolution
pdb|1MM7|C Chain C, Crystal Structure Of The Glur2 Ligand Binding Core (S1s2j)
In Complex With Quisqualate In A Zinc Crystal Form At
1.65 Angstroms Resolution
pdb|1N0T|A Chain A, X-Ray Structure Of The Glur2 Ligand-Binding Core (S1s2j)
In Complex With The Antagonist (S)-Atpo At 2.1 A
Resolution.
pdb|1N0T|B Chain B, X-Ray Structure Of The Glur2 Ligand-Binding Core (S1s2j)
In Complex With The Antagonist (S)-Atpo At 2.1 A
Resolution.
pdb|1N0T|C Chain C, X-Ray Structure Of The Glur2 Ligand-Binding Core (S1s2j)
In Complex With The Antagonist (S)-Atpo At 2.1 A
Resolution.
pdb|1N0T|D Chain D, X-Ray Structure Of The Glur2 Ligand-Binding Core (S1s2j)
In Complex With The Antagonist (S)-Atpo At 2.1 A
Resolution.
pdb|1NNK|A Chain A, X-Ray Structure Of The Glur2 Ligand-Binding Core (S1s2j)
In Complex With (S)-Atpa At 1.85 A Resolution.
Crystallization With Zinc Ions.
pdb|1NNP|A Chain A, X-Ray Structure Of The Glur2 Ligand-Binding Core (S1s2j)
In Complex With (S)-Atpa At 1.9 A Resolution.
Crystallization Without Zinc Ions.
pdb|1NNP|B Chain B, X-Ray Structure Of The Glur2 Ligand-Binding Core (S1s2j)
In Complex With (S)-Atpa At 1.9 A Resolution.
Crystallization Without Zinc Ions.
pdb|1MS7|A Chain A, X-Ray Structure Of The Glur2 Ligand-Binding Core (S1s2j)
In Complex With (S)-Des-Me-Ampa At 1.97 A Resolution,
Crystallization In The Presence Of Zinc Acetate
pdb|1MS7|B Chain B, X-Ray Structure Of The Glur2 Ligand-Binding Core (S1s2j)
In Complex With (S)-Des-Me-Ampa At 1.97 A Resolution,
Crystallization In The Presence Of Zinc Acetate
pdb|1MS7|C Chain C, X-Ray Structure Of The Glur2 Ligand-Binding Core (S1s2j)
In Complex With (S)-Des-Me-Ampa At 1.97 A Resolution,
Crystallization In The Presence Of Zinc Acetate
pdb|1MXU|A Chain A, Crystal Structure Of The Glur2 Ligand Binding Core (S1s2j)
In Complex With Bromo-Willardiine (Control For The
Crystal Titration Experiments)
pdb|1MXU|B Chain B, Crystal Structure Of The Glur2 Ligand Binding Core (S1s2j)
In Complex With Bromo-Willardiine (Control For The
Crystal Titration Experiments)
pdb|1MXU|C Chain C, Crystal Structure Of The Glur2 Ligand Binding Core (S1s2j)
In Complex With Bromo-Willardiine (Control For The
Crystal Titration Experiments)
pdb|1MXV|A Chain A, Crystal Titration Experiments (Ampa Co-Crystals Soaked In
10 Mm Brw)
pdb|1MXV|B Chain B, Crystal Titration Experiments (Ampa Co-Crystals Soaked In
10 Mm Brw)
pdb|1MXV|C Chain C, Crystal Titration Experiments (Ampa Co-Crystals Soaked In
10 Mm Brw)
pdb|1MXW|A Chain A, Crystal Titration Experiments (Ampa Co-Crystals Soaked In
1 Mm Brw)
pdb|1MXW|B Chain B, Crystal Titration Experiments (Ampa Co-Crystals Soaked In
1 Mm Brw)
pdb|1MXW|C Chain C, Crystal Titration Experiments (Ampa Co-Crystals Soaked In
1 Mm Brw)
pdb|1MXX|A Chain A, Crystal Titration Experiments (Ampa Co-Crystals Soaked In
100 Um Brw)
pdb|1MXX|B Chain B, Crystal Titration Experiments (Ampa Co-Crystals Soaked In
100 Um Brw)
pdb|1MXX|C Chain C, Crystal Titration Experiments (Ampa Co-Crystals Soaked In
100 Um Brw)
pdb|1MXY|A Chain A, Crystal Titration Experiments (Ampa Co-Crystals Soaked In
10 Um Brw)
pdb|1MXY|B Chain B, Crystal Titration Experiments (Ampa Co-Crystals Soaked In
10 Um Brw)
pdb|1MXY|C Chain C, Crystal Titration Experiments (Ampa Co-Crystals Soaked In
10 Um Brw)
pdb|1MXZ|A Chain A, Crystal Titration Experiments (ampa Co-crystals Soaked In
1 Um Brw)
pdb|1MXZ|B Chain B, Crystal Titration Experiments (ampa Co-crystals Soaked In
1 Um Brw)
pdb|1MXZ|C Chain C, Crystal Titration Experiments (ampa Co-crystals Soaked In
1 Um Brw)
pdb|1MY0|A Chain A, Crystal Titration Experiments (Ampa Co-Crystals Soaked In
100 Nm Brw)
pdb|1MY0|B Chain B, Crystal Titration Experiments (Ampa Co-Crystals Soaked In
100 Nm Brw)
pdb|1MY0|C Chain C, Crystal Titration Experiments (Ampa Co-Crystals Soaked In
100 Nm Brw)
pdb|1MY1|A Chain A, Crystal Titration Experiments (Ampa Co-Crystals Soaked In
10 Nm Brw)
pdb|1MY1|B Chain B, Crystal Titration Experiments (Ampa Co-Crystals Soaked In
10 Nm Brw)
pdb|1MY1|C Chain C, Crystal Titration Experiments (Ampa Co-Crystals Soaked In
10 Nm Brw)
pdb|1MY2|A Chain A, Crystal Titration Experiment (Ampa Complex Control)
pdb|1MY2|B Chain B, Crystal Titration Experiment (Ampa Complex Control)
pdb|1MY2|C Chain C, Crystal Titration Experiment (Ampa Complex Control)
pdb|1MY3|A Chain A, Crystal Structure Of Glutamate Receptor Ligand-Binding
Core In Complex With Bromo-Willardiine In The Zn Crystal
Form
pdb|1MY3|B Chain B, Crystal Structure Of Glutamate Receptor Ligand-Binding
Core In Complex With Bromo-Willardiine In The Zn Crystal
Form
pdb|1MY3|C Chain C, Crystal Structure Of Glutamate Receptor Ligand-Binding
Core In Complex With Bromo-Willardiine In The Zn Crystal
Form
pdb|1MY4|A Chain A, Crystal Structure Of Glutamate Receptor Ligand-Binding
Core In Complex With Iodo-Willardiine In The Zn Crystal
Form
pdb|1MY4|B Chain B, Crystal Structure Of Glutamate Receptor Ligand-Binding
Core In Complex With Iodo-Willardiine In The Zn Crystal
Form
pdb|1MY4|C Chain C, Crystal Structure Of Glutamate Receptor Ligand-Binding
Core In Complex With Iodo-Willardiine In The Zn Crystal
Form
pdb|1MQG|A Chain A, Crystal Structure Of The Glur2 Ligand Binding Core (S1s2j)
In Complex With Iodo-Willardiine At 2.15 Angstroms
Resolution
pdb|1MQG|B Chain B, Crystal Structure Of The Glur2 Ligand Binding Core (S1s2j)
In Complex With Iodo-Willardiine At 2.15 Angstroms
Resolution
pdb|1MQI|A Chain A, Crystal Structure Of The Glur2 Ligand Binding Core (s1s2j)
In Complex With Fluoro-willardiine At 1.35 Angstroms
Resolution
pdb|1MQJ|A Chain A, Crystal Structure Of The Glur2 Ligand Binding Core (S1s2j)
In Complex With Willardiine At 1.65 Angstroms Resolution
pdb|1SYH|A Chain A, X-ray Structure Of The Glur2 Ligand-binding Core (s1s2j)
In Complex With (s)-cpw399 At 1.85 A Resolution.
pdb|1WVJ|A Chain A, Exploring The Glur2 Ligand-Binding Core In Complex With
The Bicyclic Ampa Analogue (S)-4-Ahcp
pdb|2AIX|A Chain A, X-Ray Structure Of The Glur2 Ligand-Binding Core (S1s2j)
In Complex With (S)-Thio-Atpa At 2.2 A Resolution.
pdb|2AL4|A Chain A, Crystal Structure Of The Glur2 Ligand Binding Core (S1s2j)
In Complex With Quisqualate And Cx614.
pdb|2AL4|B Chain B, Crystal Structure Of The Glur2 Ligand Binding Core (S1s2j)
In Complex With Quisqualate And Cx614.
pdb|2AL4|C Chain C, Crystal Structure Of The Glur2 Ligand Binding Core (S1s2j)
In Complex With Quisqualate And Cx614.
pdb|2AL4|D Chain D, Crystal Structure Of The Glur2 Ligand Binding Core (S1s2j)
In Complex With Quisqualate And Cx614.
pdb|2AL4|E Chain E, Crystal Structure Of The Glur2 Ligand Binding Core (S1s2j)
In Complex With Quisqualate And Cx614.
pdb|2AL4|F Chain F, Crystal Structure Of The Glur2 Ligand Binding Core (S1s2j)
In Complex With Quisqualate And Cx614.
pdb|2AL5|A Chain A, Crystal Structure Of The Glur2 Ligand Binding Core (S1s2j)
In Complex With Fluoro-Willardiine And Aniracetam
pdb|2AL5|B Chain B, Crystal Structure Of The Glur2 Ligand Binding Core (S1s2j)
In Complex With Fluoro-Willardiine And Aniracetam
pdb|2CMO|A Chain A, The Structure Of A Mixed Glur2 Ligand-Binding Core Dimer
In Complex With (S)-Glutamate And The Antagonist
(S)-Ns1209
pdb|2P2A|A Chain A, X-Ray Structure Of The Glur2 Ligand Binding Core (S1s2j)
In Complex With 2-Bn-Tet-Ampa At 2.26a Resolution
pdb|2P2A|B Chain B, X-Ray Structure Of The Glur2 Ligand Binding Core (S1s2j)
In Complex With 2-Bn-Tet-Ampa At 2.26a Resolution
pdb|3BKI|P Chain P, Crystal Structure Of The Glur2 Ligand Binding Core (S1s2j)
In Complex With Fqx At 1.87 Angstroms
pdb|3BKI|B Chain B, Crystal Structure Of The Glur2 Ligand Binding Core (S1s2j)
In Complex With Fqx At 1.87 Angstroms
pdb|3BKI|C Chain C, Crystal Structure Of The Glur2 Ligand Binding Core (S1s2j)
In Complex With Fqx At 1.87 Angstroms
pdb|3BKI|D Chain D, Crystal Structure Of The Glur2 Ligand Binding Core (S1s2j)
In Complex With Fqx At 1.87 Angstroms
pdb|3BFU|A Chain A, Structure Of The Ligand-Binding Core Of Glur2 In Complex
With The Agonist (R)-Tdpa At 1.95 A Resolution
pdb|3BFU|B Chain B, Structure Of The Ligand-Binding Core Of Glur2 In Complex
With The Agonist (R)-Tdpa At 1.95 A Resolution
pdb|3BFU|C Chain C, Structure Of The Ligand-Binding Core Of Glur2 In Complex
With The Agonist (R)-Tdpa At 1.95 A Resolution
pdb|3BFU|D Chain D, Structure Of The Ligand-Binding Core Of Glur2 In Complex
With The Agonist (R)-Tdpa At 1.95 A Resolution
pdb|3BFT|A Chain A, Structure Of The Ligand-binding Core Of Glur2 In Complex
With The Agonist (s)-tdpa At 2.25 A Resolution
pdb|3BFT|B Chain B, Structure Of The Ligand-binding Core Of Glur2 In Complex
With The Agonist (s)-tdpa At 2.25 A Resolution
pdb|3BFT|C Chain C, Structure Of The Ligand-binding Core Of Glur2 In Complex
With The Agonist (s)-tdpa At 2.25 A Resolution
pdb|2CMO|B Chain B, The Structure Of A Mixed Glur2 Ligand-Binding Core Dimer
In Complex With (S)-Glutamate And The Antagonist
(S)-Ns1209
pdb|3TZA|A Chain A, Crystal Structure Of The Glua2 Ligand-Binding Domain
(S1s2j) In Complex With The Antagonist
(S)-2-Amino-3-(2-(2-Carboxyethyl)-5-
Chloro-4-Nitrophenyl)propionic Acid At 1.9a Resolution
pdb|3TZA|B Chain B, Crystal Structure Of The Glua2 Ligand-Binding Domain
(S1s2j) In Complex With The Antagonist
(S)-2-Amino-3-(2-(2-Carboxyethyl)-5-
Chloro-4-Nitrophenyl)propionic Acid At 1.9a Resolution
pdb|4G8M|A Chain A, Crystal Structure Of The Glua2 Ligand-Binding Domain
(S1s2j) In Complex With The Agonist Cbg-Iv At 2.05a
Resolution
pdb|4G8M|B Chain B, Crystal Structure Of The Glua2 Ligand-Binding Domain
(S1s2j) In Complex With The Agonist Cbg-Iv At 2.05a
Resolution
Length = 263
Score = 39.3 bits (90), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 22/91 (24%), Positives = 42/91 (46%), Gaps = 8/91 (8%)
Query: 504 VNGTDIVHGYCIDVFLAAVRLLPYAVPYKFIPYGDGH------KNPTYSELINQITTGVF 557
+ G + GYC+D LAA YK GDG ++ ++ ++ G
Sbjct: 26 LEGNERYEGYCVD--LAAEIAKHCGFKYKLTIVGDGKYGARDADTKIWNGMVGELVYGKA 83
Query: 558 DAAVGDIAIVTNRTKAVDFTQPYIESGLVVV 588
D A+ + I R + +DF++P++ G+ ++
Sbjct: 84 DIAIAPLTITLVREEVIDFSKPFMSLGISIM 114
Score = 36.6 bits (83), Expect = 0.069, Method: Compositional matrix adjust.
Identities = 22/80 (27%), Positives = 35/80 (43%), Gaps = 9/80 (11%)
Query: 743 SPEEYAIALENRTVAAVVDERPYIDLFLSDHCQFSVRGQEFTKSGWGFAFPRDSPLAIDM 802
S +YA LE+ + +P C G G+G A P+ S L +
Sbjct: 184 SKGKYAYLLESTMNEYIEQRKP---------CDTMKVGGNLDSKGYGIATPKGSSLGNAV 234
Query: 803 STAILTLSENGELQRIHDKW 822
+ A+L L+E G L ++ +KW
Sbjct: 235 NLAVLKLNEQGLLDKLKNKW 254
>pdb|3PD9|A Chain A, X-Ray Structure Of The Ligand-Binding Core Of Glua2 In
Complex With (R)-5-Hpca At 2.1 A Resolution
pdb|3PD9|B Chain B, X-Ray Structure Of The Ligand-Binding Core Of Glua2 In
Complex With (R)-5-Hpca At 2.1 A Resolution
Length = 260
Score = 39.3 bits (90), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 22/91 (24%), Positives = 42/91 (46%), Gaps = 8/91 (8%)
Query: 504 VNGTDIVHGYCIDVFLAAVRLLPYAVPYKFIPYGDGH------KNPTYSELINQITTGVF 557
+ G + GYC+D LAA YK GDG ++ ++ ++ G
Sbjct: 24 LEGNERYEGYCVD--LAAEIAKHCGFKYKLTIVGDGKYGARDADTKIWNGMVGELVYGKA 81
Query: 558 DAAVGDIAIVTNRTKAVDFTQPYIESGLVVV 588
D A+ + I R + +DF++P++ G+ ++
Sbjct: 82 DIAIAPLTITLVREEVIDFSKPFMSLGISIM 112
Score = 36.6 bits (83), Expect = 0.069, Method: Compositional matrix adjust.
Identities = 22/80 (27%), Positives = 35/80 (43%), Gaps = 9/80 (11%)
Query: 743 SPEEYAIALENRTVAAVVDERPYIDLFLSDHCQFSVRGQEFTKSGWGFAFPRDSPLAIDM 802
S +YA LE+ + +P C G G+G A P+ S L +
Sbjct: 182 SKGKYAYLLESTMNEYIEQRKP---------CDTMKVGGNLDSKGYGIATPKGSSLGNAV 232
Query: 803 STAILTLSENGELQRIHDKW 822
+ A+L L+E G L ++ +KW
Sbjct: 233 NLAVLKLNEQGLLDKLKNKW 252
>pdb|3B6T|A Chain A, Crystal Structure Of The Glur2 Ligand Binding Core (S1s2j)
T686a Mutant In Complex With Quisqualate At 2.1
Resolution
pdb|3B6Q|A Chain A, Crystal Structure Of The Glur2 Ligand Binding Core (S1s2j)
Mutant T686a In Complex With Glutamate At 2.0 Resolution
Length = 263
Score = 39.3 bits (90), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 22/91 (24%), Positives = 42/91 (46%), Gaps = 8/91 (8%)
Query: 504 VNGTDIVHGYCIDVFLAAVRLLPYAVPYKFIPYGDGH------KNPTYSELINQITTGVF 557
+ G + GYC+D LAA YK GDG ++ ++ ++ G
Sbjct: 26 LEGNERYEGYCVD--LAAEIAKHCGFKYKLTIVGDGKYGARDADTKIWNGMVGELVYGKA 83
Query: 558 DAAVGDIAIVTNRTKAVDFTQPYIESGLVVV 588
D A+ + I R + +DF++P++ G+ ++
Sbjct: 84 DIAIAPLTITLVREEVIDFSKPFMSLGISIM 114
Score = 36.6 bits (83), Expect = 0.072, Method: Compositional matrix adjust.
Identities = 22/80 (27%), Positives = 35/80 (43%), Gaps = 9/80 (11%)
Query: 743 SPEEYAIALENRTVAAVVDERPYIDLFLSDHCQFSVRGQEFTKSGWGFAFPRDSPLAIDM 802
S +YA LE+ + +P C G G+G A P+ S L +
Sbjct: 184 SKGKYAYLLESTMNEYIEQRKP---------CDTMKVGGNLDSKGYGIATPKGSSLGNAV 234
Query: 803 STAILTLSENGELQRIHDKW 822
+ A+L L+E G L ++ +KW
Sbjct: 235 NLAVLKLNEQGLLDKLKNKW 254
>pdb|2I3W|A Chain A, Measurement Of Conformational Changes Accompanying
Desensitization In An Ionotropic Glutamate Receptor:
Structure Of S729c Mutant
pdb|2I3W|B Chain B, Measurement Of Conformational Changes Accompanying
Desensitization In An Ionotropic Glutamate Receptor:
Structure Of S729c Mutant
Length = 259
Score = 39.3 bits (90), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 22/91 (24%), Positives = 42/91 (46%), Gaps = 8/91 (8%)
Query: 504 VNGTDIVHGYCIDVFLAAVRLLPYAVPYKFIPYGDGH------KNPTYSELINQITTGVF 557
+ G + GYC+D LAA YK GDG ++ ++ ++ G
Sbjct: 24 LEGNERYEGYCVD--LAAEIAKHCGFKYKLTIVGDGKYGARDADTKIWNGMVGELVYGKA 81
Query: 558 DAAVGDIAIVTNRTKAVDFTQPYIESGLVVV 588
D A+ + I R + +DF++P++ G+ ++
Sbjct: 82 DIAIAPLTITLVREEVIDFSKPFMSLGISIM 112
Score = 35.8 bits (81), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 22/80 (27%), Positives = 35/80 (43%), Gaps = 9/80 (11%)
Query: 743 SPEEYAIALENRTVAAVVDERPYIDLFLSDHCQFSVRGQEFTKSGWGFAFPRDSPLAIDM 802
S +YA LE+ + +P C G G+G A P+ S L +
Sbjct: 182 SKGKYAYLLESTMNEYIEQRKP---------CDTMKVGGNLDCKGYGIATPKGSSLGNAV 232
Query: 803 STAILTLSENGELQRIHDKW 822
+ A+L L+E G L ++ +KW
Sbjct: 233 NLAVLKLNEQGLLDKLKNKW 252
>pdb|1LBB|A Chain A, Crystal Structure Of The Glur2 Ligand Binding Domain
Mutant (s1s2j-n754d) In Complex With Kainate At 2.1 A
Resolution
Length = 263
Score = 39.3 bits (90), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 22/91 (24%), Positives = 42/91 (46%), Gaps = 8/91 (8%)
Query: 504 VNGTDIVHGYCIDVFLAAVRLLPYAVPYKFIPYGDGH------KNPTYSELINQITTGVF 557
+ G + GYC+D LAA YK GDG ++ ++ ++ G
Sbjct: 26 LEGNERYEGYCVD--LAAEIAKHCGFKYKLTIVGDGKYGARDADTKIWNGMVGELVYGKA 83
Query: 558 DAAVGDIAIVTNRTKAVDFTQPYIESGLVVV 588
D A+ + I R + +DF++P++ G+ ++
Sbjct: 84 DIAIAPLTITLVREEVIDFSKPFMSLGISIM 114
Score = 36.2 bits (82), Expect = 0.089, Method: Compositional matrix adjust.
Identities = 22/80 (27%), Positives = 34/80 (42%), Gaps = 9/80 (11%)
Query: 743 SPEEYAIALENRTVAAVVDERPYIDLFLSDHCQFSVRGQEFTKSGWGFAFPRDSPLAIDM 802
S +YA LE+ + +P C G G+G A P+ S L +
Sbjct: 184 SKGKYAYLLESTMNEYIEQRKP---------CDTMKVGGNLDSKGYGIATPKGSSLGNAV 234
Query: 803 STAILTLSENGELQRIHDKW 822
+ A+L L E G L ++ +KW
Sbjct: 235 NLAVLKLDEQGLLDKLKNKW 254
>pdb|1MQH|A Chain A, Crystal Structure Of The Glur2 Ligand Binding Core (S1s2j)
In Complex With Bromo-Willardiine At 1.8 Angstroms
Resolution
Length = 263
Score = 39.3 bits (90), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 22/91 (24%), Positives = 42/91 (46%), Gaps = 8/91 (8%)
Query: 504 VNGTDIVHGYCIDVFLAAVRLLPYAVPYKFIPYGDGH------KNPTYSELINQITTGVF 557
+ G + GYC+D LAA YK GDG ++ ++ ++ G
Sbjct: 26 LEGNERYEGYCVD--LAAEIAKHCGFKYKLTIVGDGKYGARDADTKIWNGMVGELVYGKA 83
Query: 558 DAAVGDIAIVTNRTKAVDFTQPYIESGLVVV 588
D A+ + I R + +DF++P++ G+ ++
Sbjct: 84 DIAIAPLTITLVREEVIDFSKPFMSLGISIM 114
Score = 36.6 bits (83), Expect = 0.075, Method: Compositional matrix adjust.
Identities = 22/80 (27%), Positives = 35/80 (43%), Gaps = 9/80 (11%)
Query: 743 SPEEYAIALENRTVAAVVDERPYIDLFLSDHCQFSVRGQEFTKSGWGFAFPRDSPLAIDM 802
S +YA LE+ + +P C G G+G A P+ S L +
Sbjct: 184 SKGKYAYLLESTMNEYIEQRKP---------CDTMKVGGNLDSKGYGIATPKGSSLGNAV 234
Query: 803 STAILTLSENGELQRIHDKW 822
+ A+L L+E G L ++ +KW
Sbjct: 235 NLAVLKLNEQGLLDKLKNKW 254
>pdb|2UXA|A Chain A, Crystal Structure Of The Glur2-Flip Ligand Binding Domain,
RG UNEDITED.
pdb|2UXA|B Chain B, Crystal Structure Of The Glur2-Flip Ligand Binding Domain,
RG UNEDITED.
pdb|2UXA|C Chain C, Crystal Structure Of The Glur2-Flip Ligand Binding Domain,
RG UNEDITED
Length = 261
Score = 39.3 bits (90), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 22/91 (24%), Positives = 42/91 (46%), Gaps = 8/91 (8%)
Query: 504 VNGTDIVHGYCIDVFLAAVRLLPYAVPYKFIPYGDGH------KNPTYSELINQITTGVF 557
+ G + GYC+D LAA YK GDG ++ ++ ++ G
Sbjct: 25 LEGNERYEGYCVD--LAAEIAKHCGFKYKLTIVGDGKYGARDADTKIWNGMVGELVYGKA 82
Query: 558 DAAVGDIAIVTNRTKAVDFTQPYIESGLVVV 588
D A+ + I R + +DF++P++ G+ ++
Sbjct: 83 DIAIAPLTITLVREEVIDFSKPFMSLGISIM 113
Score = 37.7 bits (86), Expect = 0.029, Method: Compositional matrix adjust.
Identities = 23/80 (28%), Positives = 35/80 (43%), Gaps = 9/80 (11%)
Query: 743 SPEEYAIALENRTVAAVVDERPYIDLFLSDHCQFSVRGQEFTKSGWGFAFPRDSPLAIDM 802
S +YA LE+ + +P C G G+G A P+ S L +
Sbjct: 183 SKGKYAYLLESTMNEYIEQRKP---------CDTMKVGGNLDSKGYGIATPKGSSLRTPV 233
Query: 803 STAILTLSENGELQRIHDKW 822
+ A+L LSE G L ++ +KW
Sbjct: 234 NLAVLKLSEQGVLDKLKNKW 253
>pdb|1P1N|A Chain A, Glur2 Ligand Binding Core (S1s2j) Mutant L650t In Complex
With Kainate
pdb|1P1O|A Chain A, Crystal Structure Of The Glur2 Ligand-Binding Core (S1s2j)
Mutant L650t In Complex With Quisqualate
pdb|1P1Q|A Chain A, Crystal Structure Of The Glur2 Ligand Binding Core (S1s2j)
L650t Mutant In Complex With Ampa
pdb|1P1Q|B Chain B, Crystal Structure Of The Glur2 Ligand Binding Core (S1s2j)
L650t Mutant In Complex With Ampa
pdb|1P1Q|C Chain C, Crystal Structure Of The Glur2 Ligand Binding Core (S1s2j)
L650t Mutant In Complex With Ampa
pdb|1P1U|A Chain A, Crystal Structure Of The Glur2 Ligand-Binding Core (S1s2j)
L650t Mutant In Complex With Ampa (Ammonium Sulfate
Crystal Form)
pdb|1P1U|B Chain B, Crystal Structure Of The Glur2 Ligand-Binding Core (S1s2j)
L650t Mutant In Complex With Ampa (Ammonium Sulfate
Crystal Form)
Length = 263
Score = 39.3 bits (90), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 22/91 (24%), Positives = 42/91 (46%), Gaps = 8/91 (8%)
Query: 504 VNGTDIVHGYCIDVFLAAVRLLPYAVPYKFIPYGDGH------KNPTYSELINQITTGVF 557
+ G + GYC+D LAA YK GDG ++ ++ ++ G
Sbjct: 26 LEGNERYEGYCVD--LAAEIAKHCGFKYKLTIVGDGKYGARDADTKIWNGMVGELVYGKA 83
Query: 558 DAAVGDIAIVTNRTKAVDFTQPYIESGLVVV 588
D A+ + I R + +DF++P++ G+ ++
Sbjct: 84 DIAIAPLTITLVREEVIDFSKPFMSLGISIM 114
Score = 36.6 bits (83), Expect = 0.072, Method: Compositional matrix adjust.
Identities = 22/80 (27%), Positives = 35/80 (43%), Gaps = 9/80 (11%)
Query: 743 SPEEYAIALENRTVAAVVDERPYIDLFLSDHCQFSVRGQEFTKSGWGFAFPRDSPLAIDM 802
S +YA LE+ + +P C G G+G A P+ S L +
Sbjct: 184 SKGKYAYLLESTMNEYIEQRKP---------CDTMKVGGNLDSKGYGIATPKGSSLGNAV 234
Query: 803 STAILTLSENGELQRIHDKW 822
+ A+L L+E G L ++ +KW
Sbjct: 235 NLAVLKLNEQGLLDKLKNKW 254
>pdb|2XHD|A Chain A, Crystal Structure Of N-((2s)-5-(6-Fluoro-3-Pyridinyl)-2,3-
Dihydro-1h-Inden-2-Yl)-2-Propanesulfonamide In Complex
With The Ligand Binding Domain Of The Human Glua2
Receptor
pdb|2XHD|B Chain B, Crystal Structure Of N-((2s)-5-(6-Fluoro-3-Pyridinyl)-2,3-
Dihydro-1h-Inden-2-Yl)-2-Propanesulfonamide In Complex
With The Ligand Binding Domain Of The Human Glua2
Receptor
Length = 263
Score = 39.3 bits (90), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 22/91 (24%), Positives = 42/91 (46%), Gaps = 8/91 (8%)
Query: 504 VNGTDIVHGYCIDVFLAAVRLLPYAVPYKFIPYGDGH------KNPTYSELINQITTGVF 557
+ G + GYC+D LAA YK GDG ++ ++ ++ G
Sbjct: 26 LEGNERYEGYCVD--LAAEIAKHCGFKYKLTIVGDGKYGARDADTKIWNGMVGELVYGKA 83
Query: 558 DAAVGDIAIVTNRTKAVDFTQPYIESGLVVV 588
D A+ + I R + +DF++P++ G+ ++
Sbjct: 84 DIAIAPLTITLVREEVIDFSKPFMSLGISIM 114
Score = 37.7 bits (86), Expect = 0.027, Method: Compositional matrix adjust.
Identities = 23/80 (28%), Positives = 35/80 (43%), Gaps = 9/80 (11%)
Query: 743 SPEEYAIALENRTVAAVVDERPYIDLFLSDHCQFSVRGQEFTKSGWGFAFPRDSPLAIDM 802
S +YA LE+ + +P C G G+G A P+ S L +
Sbjct: 184 SKGKYAYLLESTMNEYIEQRKP---------CDTMKVGGNLDSKGYGIATPKGSSLRTPV 234
Query: 803 STAILTLSENGELQRIHDKW 822
+ A+L LSE G L ++ +KW
Sbjct: 235 NLAVLKLSEQGVLDKLKNKW 254
>pdb|2XX7|A Chain A, Crystal Structure Of
1-(4-(1-Pyrrolidinylcarbonyl)phenyl)-3-
(Trifluoromethyl)-4,5,6,7-Tetrahydro-1h-Indazole In
Complex With The Ligand Binding Domain Of The Rat Glua2
Receptor And Glutamate At 2.2a Resolution.
pdb|2XX7|B Chain B, Crystal Structure Of
1-(4-(1-Pyrrolidinylcarbonyl)phenyl)-3-
(Trifluoromethyl)-4,5,6,7-Tetrahydro-1h-Indazole In
Complex With The Ligand Binding Domain Of The Rat Glua2
Receptor And Glutamate At 2.2a Resolution.
pdb|2XX7|C Chain C, Crystal Structure Of
1-(4-(1-Pyrrolidinylcarbonyl)phenyl)-3-
(Trifluoromethyl)-4,5,6,7-Tetrahydro-1h-Indazole In
Complex With The Ligand Binding Domain Of The Rat Glua2
Receptor And Glutamate At 2.2a Resolution
Length = 291
Score = 39.3 bits (90), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 22/91 (24%), Positives = 42/91 (46%), Gaps = 8/91 (8%)
Query: 504 VNGTDIVHGYCIDVFLAAVRLLPYAVPYKFIPYGDGH------KNPTYSELINQITTGVF 557
+ G + GYC+D LAA YK GDG ++ ++ ++ G
Sbjct: 55 LEGNERYEGYCVD--LAAEIAKHCGFKYKLTIVGDGKYGARDADTKIWNGMVGELVYGKA 112
Query: 558 DAAVGDIAIVTNRTKAVDFTQPYIESGLVVV 588
D A+ + I R + +DF++P++ G+ ++
Sbjct: 113 DIAIAPLTITLVREEVIDFSKPFMSLGISIM 143
Score = 38.1 bits (87), Expect = 0.026, Method: Compositional matrix adjust.
Identities = 23/80 (28%), Positives = 35/80 (43%), Gaps = 9/80 (11%)
Query: 743 SPEEYAIALENRTVAAVVDERPYIDLFLSDHCQFSVRGQEFTKSGWGFAFPRDSPLAIDM 802
S +YA LE+ + +P C G G+G A P+ S L +
Sbjct: 213 SKGKYAYLLESTMNEYIEQRKP---------CDTMKVGGNLDSKGYGIATPKGSSLGNAV 263
Query: 803 STAILTLSENGELQRIHDKW 822
+ A+L LSE G L ++ +KW
Sbjct: 264 NLAVLKLSEQGLLDKLKNKW 283
>pdb|3O28|A Chain A, Ligand-Binding Domain Of Glua2 (Flip) Ionotropic Glutamate
Receptor In Complex With An Allosteric Modulator
Length = 263
Score = 39.3 bits (90), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 22/91 (24%), Positives = 42/91 (46%), Gaps = 8/91 (8%)
Query: 504 VNGTDIVHGYCIDVFLAAVRLLPYAVPYKFIPYGDGH------KNPTYSELINQITTGVF 557
+ G + GYC+D LAA YK GDG ++ ++ ++ G
Sbjct: 26 LEGNERYEGYCVD--LAAEIAKHCGFKYKLTIVGDGKYGARDADTKIWNGMVGELVYGKA 83
Query: 558 DAAVGDIAIVTNRTKAVDFTQPYIESGLVVV 588
D A+ + I R + +DF++P++ G+ ++
Sbjct: 84 DIAIAPLTITLVREEVIDFSKPFMSLGISIM 114
Score = 38.9 bits (89), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 23/80 (28%), Positives = 35/80 (43%), Gaps = 9/80 (11%)
Query: 743 SPEEYAIALENRTVAAVVDERPYIDLFLSDHCQFSVRGQEFTKSGWGFAFPRDSPLAIDM 802
S +YA LE+ + +P C G G+G A P+ S L +
Sbjct: 184 SKGKYAYLLESTMNEYIEQRKP---------CDTMKVGGNLDSKGYGIATPKGSSLGTPV 234
Query: 803 STAILTLSENGELQRIHDKW 822
+ A+L LSE G L ++ +KW
Sbjct: 235 NLAVLKLSEQGVLDKLKNKW 254
>pdb|3O29|A Chain A, Ligand-Binding Domain Of Glua2 (Flip) Ionotropic Glutamate
Receptor In Complex With An Allosteric Modulator
pdb|3O2A|A Chain A, Ligand-Binding Domain Of Glua2 (Flip) Ionotropic Glutamate
Receptor In Complex With An Allosteric Modulator
pdb|3O6G|A Chain A, Ligand-Binding Domain Of Glua2 (Flip) Ionotropic Glutamate
Receptor In Complex With An Allosteric Modulator
pdb|3O6H|A Chain A, Ligand-Binding Domain Of Glua2 (Flip) Ionotropic Glutamate
Receptor In Complex With An Allosteric Modulator
pdb|3O6I|A Chain A, Ligand-Binding Domain Of Glua2 (Flip) Ionotropic Glutamate
Receptor In Complex With An Allosteric Modulator
pdb|3PMV|A Chain A, Ligand-Binding Domain Of Glua2 (Flip) Ionotropic Glutamate
Receptor In Complex With An Allosteric Modulator
pdb|3PMW|A Chain A, Ligand-Binding Domain Of Glua2 (Flip) Ionotropic Glutamate
Receptor In Complex With An Allosteric Modulator
pdb|3PMX|A Chain A, Ligand-Binding Domain Of Glua2 (Flip) Ionotropic Glutamate
Receptor In Complex With An Allosteric Modulator
pdb|4FAT|A Chain A, Ligand-Binding Domain Of Glua2 (Flip) Ionotropic Glutamate
Receptor In Complex With An Allosteric Modulator
Length = 263
Score = 39.3 bits (90), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 22/91 (24%), Positives = 42/91 (46%), Gaps = 8/91 (8%)
Query: 504 VNGTDIVHGYCIDVFLAAVRLLPYAVPYKFIPYGDGH------KNPTYSELINQITTGVF 557
+ G + GYC+D LAA YK GDG ++ ++ ++ G
Sbjct: 26 LEGNERYEGYCVD--LAAEIAKHCGFKYKLTIVGDGKYGARDADTKIWNGMVGELVYGKA 83
Query: 558 DAAVGDIAIVTNRTKAVDFTQPYIESGLVVV 588
D A+ + I R + +DF++P++ G+ ++
Sbjct: 84 DIAIAPLTITLVREEVIDFSKPFMSLGISIM 114
Score = 38.9 bits (89), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 23/80 (28%), Positives = 35/80 (43%), Gaps = 9/80 (11%)
Query: 743 SPEEYAIALENRTVAAVVDERPYIDLFLSDHCQFSVRGQEFTKSGWGFAFPRDSPLAIDM 802
S +YA LE+ + +P C G G+G A P+ S L +
Sbjct: 184 SKGKYAYLLESTMNEYIEQRKP---------CDTMKVGGNLDSKGYGIATPKGSSLGTPV 234
Query: 803 STAILTLSENGELQRIHDKW 822
+ A+L LSE G L ++ +KW
Sbjct: 235 NLAVLKLSEQGVLDKLKNKW 254
>pdb|1GR2|A Chain A, Structure Of A Glutamate Receptor Ligand Binding Core
(Glur2) Complexed With Kainate
pdb|1FTK|A Chain A, Crystal Structure Of The Glur2 Ligand Binding Core (S1s2i)
In Complex With Kainate At 1.6 A Resolution
Length = 279
Score = 39.3 bits (90), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 22/91 (24%), Positives = 42/91 (46%), Gaps = 8/91 (8%)
Query: 504 VNGTDIVHGYCIDVFLAAVRLLPYAVPYKFIPYGDGH------KNPTYSELINQITTGVF 557
+ G + GYC+D LAA YK GDG ++ ++ ++ G
Sbjct: 38 LEGNERYEGYCVD--LAAEIAKHCGFKYKLTIVGDGKYGARDADTKIWNGMVGELVYGKA 95
Query: 558 DAAVGDIAIVTNRTKAVDFTQPYIESGLVVV 588
D A+ + I R + +DF++P++ G+ ++
Sbjct: 96 DIAIAPLTITLVREEVIDFSKPFMSLGISIM 126
Score = 36.6 bits (83), Expect = 0.066, Method: Compositional matrix adjust.
Identities = 22/80 (27%), Positives = 35/80 (43%), Gaps = 9/80 (11%)
Query: 743 SPEEYAIALENRTVAAVVDERPYIDLFLSDHCQFSVRGQEFTKSGWGFAFPRDSPLAIDM 802
S +YA LE+ + +P C G G+G A P+ S L +
Sbjct: 200 SKGKYAYLLESTMNEYIEQRKP---------CDTMKVGGNLDSKGYGIATPKGSSLGNAV 250
Query: 803 STAILTLSENGELQRIHDKW 822
+ A+L L+E G L ++ +KW
Sbjct: 251 NLAVLKLNEQGLLDKLKNKW 270
>pdb|3TDJ|A Chain A, Crystal Structure Of The Glua2 Ligand-Binding Domain
(S1s2j-L483y- N754s) In Complex With Glutamate And
Bpam-97 At 1.95 A Resolution
pdb|3TDJ|B Chain B, Crystal Structure Of The Glua2 Ligand-Binding Domain
(S1s2j-L483y- N754s) In Complex With Glutamate And
Bpam-97 At 1.95 A Resolution
pdb|3TKD|A Chain A, Crystal Structure Of The Glua2 Ligand-Binding Domain
(S1s2j-L483y- N754s) In Complex With Glutamate And
Cyclothiazide At 1.45 A Resolution
pdb|3TKD|B Chain B, Crystal Structure Of The Glua2 Ligand-Binding Domain
(S1s2j-L483y- N754s) In Complex With Glutamate And
Cyclothiazide At 1.45 A Resolution
Length = 263
Score = 38.9 bits (89), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 22/91 (24%), Positives = 42/91 (46%), Gaps = 8/91 (8%)
Query: 504 VNGTDIVHGYCIDVFLAAVRLLPYAVPYKFIPYGDGH------KNPTYSELINQITTGVF 557
+ G + GYC+D LAA YK GDG ++ ++ ++ G
Sbjct: 26 LEGNERYEGYCVD--LAAEIAKHCGFKYKLTIVGDGKYGARDADTKIWNGMVGELVYGKA 83
Query: 558 DAAVGDIAIVTNRTKAVDFTQPYIESGLVVV 588
D A+ + I R + +DF++P++ G+ ++
Sbjct: 84 DIAIAPLTITYVREEVIDFSKPFMSLGISIM 114
Score = 37.7 bits (86), Expect = 0.029, Method: Compositional matrix adjust.
Identities = 23/80 (28%), Positives = 35/80 (43%), Gaps = 9/80 (11%)
Query: 743 SPEEYAIALENRTVAAVVDERPYIDLFLSDHCQFSVRGQEFTKSGWGFAFPRDSPLAIDM 802
S +YA LE+ + +P C G G+G A P+ S L +
Sbjct: 184 SKGKYAYLLESTMNEYIEQRKP---------CDTMKVGGNLDSKGYGIATPKGSSLGNAV 234
Query: 803 STAILTLSENGELQRIHDKW 822
+ A+L LSE G L ++ +KW
Sbjct: 235 NLAVLKLSEQGLLDKLKNKW 254
>pdb|1LB8|A Chain A, Crystal Structure Of The Non-Desensitizing Glur2 Ligand
Binding Core Mutant (S1s2j-L483y) In Complex With Ampa
At 2.3 Resolution
pdb|1LB8|B Chain B, Crystal Structure Of The Non-Desensitizing Glur2 Ligand
Binding Core Mutant (S1s2j-L483y) In Complex With Ampa
At 2.3 Resolution
pdb|1LB9|A Chain A, Crystal Structure Of The Non-Desensitizing Glur2 Ligand
Binding Core Mutant (S1s2j-L483y) In Complex With
Antagonist Dnqx At 2.3 A Resolution
pdb|1LB9|B Chain B, Crystal Structure Of The Non-Desensitizing Glur2 Ligand
Binding Core Mutant (S1s2j-L483y) In Complex With
Antagonist Dnqx At 2.3 A Resolution
Length = 263
Score = 38.9 bits (89), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 22/91 (24%), Positives = 42/91 (46%), Gaps = 8/91 (8%)
Query: 504 VNGTDIVHGYCIDVFLAAVRLLPYAVPYKFIPYGDGH------KNPTYSELINQITTGVF 557
+ G + GYC+D LAA YK GDG ++ ++ ++ G
Sbjct: 26 LEGNERYEGYCVD--LAAEIAKHCGFKYKLTIVGDGKYGARDADTKIWNGMVGELVYGKA 83
Query: 558 DAAVGDIAIVTNRTKAVDFTQPYIESGLVVV 588
D A+ + I R + +DF++P++ G+ ++
Sbjct: 84 DIAIAPLTITYVREEVIDFSKPFMSLGISIM 114
Score = 36.6 bits (83), Expect = 0.068, Method: Compositional matrix adjust.
Identities = 22/80 (27%), Positives = 35/80 (43%), Gaps = 9/80 (11%)
Query: 743 SPEEYAIALENRTVAAVVDERPYIDLFLSDHCQFSVRGQEFTKSGWGFAFPRDSPLAIDM 802
S +YA LE+ + +P C G G+G A P+ S L +
Sbjct: 184 SKGKYAYLLESTMNEYIEQRKP---------CDTMKVGGNLDSKGYGIATPKGSSLGNAV 234
Query: 803 STAILTLSENGELQRIHDKW 822
+ A+L L+E G L ++ +KW
Sbjct: 235 NLAVLKLNEQGLLDKLKNKW 254
>pdb|1P1W|A Chain A, Crystal Structure Of The Glur2 Ligand-Binding Core (S1s2j)
With The L483y And L650t Mutations And In Complex With
Ampa
pdb|1P1W|B Chain B, Crystal Structure Of The Glur2 Ligand-Binding Core (S1s2j)
With The L483y And L650t Mutations And In Complex With
Ampa
Length = 263
Score = 38.9 bits (89), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 22/91 (24%), Positives = 42/91 (46%), Gaps = 8/91 (8%)
Query: 504 VNGTDIVHGYCIDVFLAAVRLLPYAVPYKFIPYGDGH------KNPTYSELINQITTGVF 557
+ G + GYC+D LAA YK GDG ++ ++ ++ G
Sbjct: 26 LEGNERYEGYCVD--LAAEIAKHCGFKYKLTIVGDGKYGARDADTKIWNGMVGELVYGKA 83
Query: 558 DAAVGDIAIVTNRTKAVDFTQPYIESGLVVV 588
D A+ + I R + +DF++P++ G+ ++
Sbjct: 84 DIAIAPLTITYVREEVIDFSKPFMSLGISIM 114
Score = 36.6 bits (83), Expect = 0.069, Method: Compositional matrix adjust.
Identities = 22/80 (27%), Positives = 35/80 (43%), Gaps = 9/80 (11%)
Query: 743 SPEEYAIALENRTVAAVVDERPYIDLFLSDHCQFSVRGQEFTKSGWGFAFPRDSPLAIDM 802
S +YA LE+ + +P C G G+G A P+ S L +
Sbjct: 184 SKGKYAYLLESTMNEYIEQRKP---------CDTMKVGGNLDSKGYGIATPKGSSLGNAV 234
Query: 803 STAILTLSENGELQRIHDKW 822
+ A+L L+E G L ++ +KW
Sbjct: 235 NLAVLKLNEQGLLDKLKNKW 254
>pdb|3OEK|A Chain A, Crystal Structure Of Glun2d Ligand-Binding Core In Complex
With L- Aspartate
pdb|3OEL|A Chain A, Crystal Structure Of Glun2d Ligand-Binding Core In Complex
With D- Glutamate
pdb|3OEM|A Chain A, Crystal Structure Of Glun2d Ligand-Binding Core In Complex
With N- Methyl-D-Aspartate
pdb|3OEN|A Chain A, Crystal Structure Of Glun2d Ligand-Binding Core In Complex
With L- Glutamate
Length = 286
Score = 38.1 bits (87), Expect = 0.023, Method: Compositional matrix adjust.
Identities = 19/82 (23%), Positives = 41/82 (50%), Gaps = 2/82 (2%)
Query: 509 IVHGYCIDVFLAAVRLLPYAVPYKFIPYGDGHK--NPTYSELINQITTGVFDAAVGDIAI 566
G+CID+ + ++ + G K + ++ +I ++ D A+G + I
Sbjct: 58 CCKGFCIDILKRLAHTIGFSYDLYLVTNGKHGKKIDGVWNGMIGEVFYQRADMAIGSLTI 117
Query: 567 VTNRTKAVDFTQPYIESGLVVV 588
R++ VDF+ P++E+G+ V+
Sbjct: 118 NEERSEIVDFSVPFVETGISVM 139
>pdb|3T93|B Chain B, Glutamate Bound To A Double Cysteine Mutant (A452cS652C)
OF THE Ligand Binding Domain Of Glua2
pdb|3T93|D Chain D, Glutamate Bound To A Double Cysteine Mutant (A452cS652C)
OF THE Ligand Binding Domain Of Glua2
pdb|3T93|F Chain F, Glutamate Bound To A Double Cysteine Mutant (A452cS652C)
OF THE Ligand Binding Domain Of Glua2
pdb|3T96|B Chain B, Iodowillardiine Bound To A Double Cysteine Mutant
(A452cS652C) OF THE Ligand Binding Domain Of Glua2
pdb|3T96|D Chain D, Iodowillardiine Bound To A Double Cysteine Mutant
(A452cS652C) OF THE Ligand Binding Domain Of Glua2
pdb|3T96|F Chain F, Iodowillardiine Bound To A Double Cysteine Mutant
(A452cS652C) OF THE Ligand Binding Domain Of Glua2
pdb|3T9H|B Chain B, Kainate Bound To A Double Cysteine Mutant (A452cS652C) OF
THE LIGAND Binding Domain Of Glua2
pdb|3T9H|D Chain D, Kainate Bound To A Double Cysteine Mutant (A452cS652C) OF
THE LIGAND Binding Domain Of Glua2
pdb|3T9H|F Chain F, Kainate Bound To A Double Cysteine Mutant (A452cS652C) OF
THE LIGAND Binding Domain Of Glua2
pdb|3T9U|A Chain A, Cnqx Bound To An Oxidized Double Cysteine Mutant
(A452cS652C) OF THE Ligand Binding Domain Of Glua2
pdb|3T9U|B Chain B, Cnqx Bound To An Oxidized Double Cysteine Mutant
(A452cS652C) OF THE Ligand Binding Domain Of Glua2
pdb|3T9U|C Chain C, Cnqx Bound To An Oxidized Double Cysteine Mutant
(A452cS652C) OF THE Ligand Binding Domain Of Glua2
pdb|3T9V|A Chain A, Cnqx Bound To A Reduced Double Cysteine Mutant
(A452cS652C) OF THE Ligand Binding Domain Of Glua2
pdb|3T9V|B Chain B, Cnqx Bound To A Reduced Double Cysteine Mutant
(A452cS652C) OF THE Ligand Binding Domain Of Glua2
Length = 258
Score = 38.1 bits (87), Expect = 0.023, Method: Composition-based stats.
Identities = 22/91 (24%), Positives = 42/91 (46%), Gaps = 8/91 (8%)
Query: 504 VNGTDIVHGYCIDVFLAAVRLLPYAVPYKFIPYGDGH------KNPTYSELINQITTGVF 557
+ G + GYC+D LAA YK GDG ++ ++ ++ G
Sbjct: 23 LEGNERYEGYCVD--LAAEIAKHCGFKYKLTIVGDGKYGCRDADTKIWNGMVGELVYGKA 80
Query: 558 DAAVGDIAIVTNRTKAVDFTQPYIESGLVVV 588
D A+ + I R + +DF++P++ G+ ++
Sbjct: 81 DIAIAPLTITLVREEVIDFSKPFMSLGISIM 111
Score = 36.2 bits (82), Expect = 0.095, Method: Composition-based stats.
Identities = 23/85 (27%), Positives = 36/85 (42%), Gaps = 9/85 (10%)
Query: 743 SPEEYAIALENRTVAAVVDERPYIDLFLSDHCQFSVRGQEFTKSGWGFAFPRDSPLAIDM 802
S +YA LE+ + +P C G G+G A P+ S L +
Sbjct: 181 SKGKYAYLLESTMNEYIEQRKP---------CDTMKVGGNLDSKGYGIATPKGSSLGNAV 231
Query: 803 STAILTLSENGELQRIHDKWLRKKA 827
+ A+L L+E G L ++ +KW K
Sbjct: 232 NLAVLKLNEQGLLDKLKNKWWYDKG 256
>pdb|3TQL|A Chain A, Structure Of The Amino Acid Abc Transporter, Periplasmic
Amino Acid- Binding Protein From Coxiella Burnetii
Length = 227
Score = 37.7 bits (86), Expect = 0.027, Method: Composition-based stats.
Identities = 19/48 (39%), Positives = 24/48 (50%)
Query: 542 NPTYSELINQITTGVFDAAVGDIAIVTNRTKAVDFTQPYIESGLVVVA 589
N + LI + G FDA G I T R K VDFT PY + + +A
Sbjct: 47 NQPWDSLIPSLKLGKFDALFGGXNITTARQKEVDFTDPYYTNSVSFIA 94
>pdb|1GGG|A Chain A, Glutamine Binding Protein Open Ligand-Free Structure
pdb|1GGG|B Chain B, Glutamine Binding Protein Open Ligand-Free Structure
pdb|1WDN|A Chain A, Glutamine-Binding Protein
Length = 226
Score = 37.4 bits (85), Expect = 0.045, Method: Composition-based stats.
Identities = 25/87 (28%), Positives = 43/87 (49%), Gaps = 9/87 (10%)
Query: 502 FKVNGTDIVHGYCIDVFLAAVRLLPYAVPYKFIPYGDGHKNPTYSELINQITTGVFDAAV 561
F+ D+ G+ +D++ A + L + Y+ P +S +I + T D A+
Sbjct: 16 FEFKQGDLYVGFDVDLWAAIAKEL--KLDYELKPM-------DFSGIIPALQTKNVDLAL 66
Query: 562 GDIAIVTNRTKAVDFTQPYIESGLVVV 588
I I R KA+DF+ Y +SGL+V+
Sbjct: 67 AGITITDERKKAIDFSDGYYKSGLLVM 93
Score = 36.6 bits (83), Expect = 0.061, Method: Composition-based stats.
Identities = 23/69 (33%), Positives = 34/69 (49%), Gaps = 3/69 (4%)
Query: 758 AVVDERPYIDLFL--SDHCQFSVRGQEFTKSGWGFAFPRDS-PLAIDMSTAILTLSENGE 814
AV+ + P I F+ + + QF G +G AFP+ S L ++ A+ TL ENG
Sbjct: 153 AVLHDTPNILYFIKTAGNGQFKAVGDSLEAQQYGIAFPKGSDELRDKVNGALKTLRENGT 212
Query: 815 LQRIHDKWL 823
I+ KW
Sbjct: 213 YNEIYKKWF 221
>pdb|1YK1|A Chain A, Structure Of Natriuretic Peptide Receptor-C Complexed With
Brain Natriuretic Peptide
pdb|1YK1|B Chain B, Structure Of Natriuretic Peptide Receptor-C Complexed With
Brain Natriuretic Peptide
Length = 479
Score = 36.2 bits (82), Expect = 0.085, Method: Compositional matrix adjust.
Identities = 33/158 (20%), Positives = 66/158 (41%), Gaps = 4/158 (2%)
Query: 118 IVGPQSAVMAHVLSHLANELQVPLLSFTALDPTLS--PLQYPFFVQTAPNDLYLMSAIAE 175
I+GP A ++ LA+ +P+LS AL +Y + AP + +
Sbjct: 130 ILGPVCEYAAAPVARLASHWDLPMLSAGALAAGFQHKDSEYSHLTRVAPAYAKMGEMMLA 189
Query: 176 MVSYFGWGEVIAIFNDDDQGRNGVTALGDKLAEIRCKISYKSALPPDQSVTETDVRNELV 235
+ + W +++DD RN L + + E+ + +++ + D+ + +
Sbjct: 190 LFRHHHWSRAALVYSDDKLERNCYFTL-EGVHEVFQEEGLHTSIYSFDETKDLDLEDIVR 248
Query: 236 KVRMMEARVIVVHGYSRTGLMVFDVAQRLGMMDSGYVW 273
++ E RV+++ S T + VA R GM Y +
Sbjct: 249 NIQASE-RVVIMCASSDTIRSIMLVAHRHGMTSGDYAF 285
>pdb|1YK0|A Chain A, Structure Of Natriuretic Peptide Receptor-c Complexed With
Atrial Natriuretic Peptide
pdb|1YK0|B Chain B, Structure Of Natriuretic Peptide Receptor-c Complexed With
Atrial Natriuretic Peptide
Length = 480
Score = 36.2 bits (82), Expect = 0.089, Method: Compositional matrix adjust.
Identities = 33/158 (20%), Positives = 66/158 (41%), Gaps = 4/158 (2%)
Query: 118 IVGPQSAVMAHVLSHLANELQVPLLSFTALDPTLS--PLQYPFFVQTAPNDLYLMSAIAE 175
I+GP A ++ LA+ +P+LS AL +Y + AP + +
Sbjct: 131 ILGPVCEYAAAPVARLASHWDLPMLSAGALAAGFQHKDSEYSHLTRVAPAYAKMGEMMLA 190
Query: 176 MVSYFGWGEVIAIFNDDDQGRNGVTALGDKLAEIRCKISYKSALPPDQSVTETDVRNELV 235
+ + W +++DD RN L + + E+ + +++ + D+ + +
Sbjct: 191 LFRHHHWSRAALVYSDDKLERNCYFTL-EGVHEVFQEEGLHTSIYSFDETKDLDLEDIVR 249
Query: 236 KVRMMEARVIVVHGYSRTGLMVFDVAQRLGMMDSGYVW 273
++ E RV+++ S T + VA R GM Y +
Sbjct: 250 NIQASE-RVVIMCASSDTIRSIMLVAHRHGMTSGDYAF 286
>pdb|3EN3|A Chain A, Crystal Structure Of The Glur4 Ligand-Binding Domain In
Complex With Kainate
pdb|3EPE|A Chain A, Crystal Structure Of The Glur4 Ligand-Binding Domain In
Complex With Glutamate
pdb|3EPE|B Chain B, Crystal Structure Of The Glur4 Ligand-Binding Domain In
Complex With Glutamate
Length = 257
Score = 36.2 bits (82), Expect = 0.093, Method: Composition-based stats.
Identities = 17/48 (35%), Positives = 25/48 (52%)
Query: 780 GQEFTKSGWGFAFPRDSPLAIDMSTAILTLSENGELQRIHDKWLRKKA 827
G G+G A P+ S L ++ A+L LSE G L ++ +KW K
Sbjct: 208 GGNLDSKGYGVATPKGSSLRTPVNLAVLKLSEAGVLDKLKNKWWYDKG 255
Score = 34.7 bits (78), Expect = 0.26, Method: Composition-based stats.
Identities = 20/89 (22%), Positives = 41/89 (46%), Gaps = 8/89 (8%)
Query: 506 GTDIVHGYCIDVFLAAVRLLPYAVPYKFIPYGDGH------KNPTYSELINQITTGVFDA 559
G D GYC+D LA+ + YK DG ++ ++ ++ G +
Sbjct: 24 GNDKYEGYCVD--LASEIAKHIGIKYKIAIVPDGKYGARDADTKIWNGMVGELVYGKAEI 81
Query: 560 AVGDIAIVTNRTKAVDFTQPYIESGLVVV 588
A+ + I R + +DF++P++ G+ ++
Sbjct: 82 AIAPLTITLVREEVIDFSKPFMSLGISIM 110
>pdb|3KEI|A Chain A, Crystal Structure Of The Glua4 Ligand-Binding Domain L651v
Mutant In Complex With Glutamate
pdb|3KEI|B Chain B, Crystal Structure Of The Glua4 Ligand-Binding Domain L651v
Mutant In Complex With Glutamate
pdb|3KFM|A Chain A, Crystal Structure Of The Glua4 Ligand-Binding Domain L651v
Mutant In Complex With Kainate
Length = 257
Score = 36.2 bits (82), Expect = 0.094, Method: Composition-based stats.
Identities = 17/48 (35%), Positives = 25/48 (52%)
Query: 780 GQEFTKSGWGFAFPRDSPLAIDMSTAILTLSENGELQRIHDKWLRKKA 827
G G+G A P+ S L ++ A+L LSE G L ++ +KW K
Sbjct: 208 GGNLDSKGYGVATPKGSSLRTPVNLAVLKLSEAGVLDKLKNKWWYDKG 255
Score = 34.7 bits (78), Expect = 0.26, Method: Composition-based stats.
Identities = 20/89 (22%), Positives = 41/89 (46%), Gaps = 8/89 (8%)
Query: 506 GTDIVHGYCIDVFLAAVRLLPYAVPYKFIPYGDGH------KNPTYSELINQITTGVFDA 559
G D GYC+D LA+ + YK DG ++ ++ ++ G +
Sbjct: 24 GNDKYEGYCVD--LASEIAKHIGIKYKIAIVPDGKYGARDADTKIWNGMVGELVYGKAEI 81
Query: 560 AVGDIAIVTNRTKAVDFTQPYIESGLVVV 588
A+ + I R + +DF++P++ G+ ++
Sbjct: 82 AIAPLTITLVREEVIDFSKPFMSLGISIM 110
>pdb|3FAT|A Chain A, X-Ray Structure Of Iglur4 Flip Ligand-Binding Core (S1s2)
In Complex With (S)-Ampa At 1.90a Resolution
pdb|3FAT|B Chain B, X-Ray Structure Of Iglur4 Flip Ligand-Binding Core (S1s2)
In Complex With (S)-Ampa At 1.90a Resolution
pdb|3FAT|C Chain C, X-Ray Structure Of Iglur4 Flip Ligand-Binding Core (S1s2)
In Complex With (S)-Ampa At 1.90a Resolution
pdb|3FAS|A Chain A, X-Ray Structure Of Iglur4 Flip Ligand-Binding Core (S1s2)
In Complex With (S)-Glutamate At 1.40a Resolution
pdb|3FAS|B Chain B, X-Ray Structure Of Iglur4 Flip Ligand-Binding Core (S1s2)
In Complex With (S)-Glutamate At 1.40a Resolution
Length = 260
Score = 36.2 bits (82), Expect = 0.094, Method: Composition-based stats.
Identities = 17/48 (35%), Positives = 25/48 (52%)
Query: 780 GQEFTKSGWGFAFPRDSPLAIDMSTAILTLSENGELQRIHDKWLRKKA 827
G G+G A P+ S L ++ A+L LSE G L ++ +KW K
Sbjct: 210 GGNLDSKGYGVATPKGSSLRTPVNLAVLKLSEAGVLDKLKNKWWYDKG 257
Score = 34.7 bits (78), Expect = 0.26, Method: Composition-based stats.
Identities = 20/89 (22%), Positives = 41/89 (46%), Gaps = 8/89 (8%)
Query: 506 GTDIVHGYCIDVFLAAVRLLPYAVPYKFIPYGDGH------KNPTYSELINQITTGVFDA 559
G D GYC+D LA+ + YK DG ++ ++ ++ G +
Sbjct: 26 GNDKYEGYCVD--LASEIAKHIGIKYKIAIVPDGKYGARDADTKIWNGMVGELVYGKAEI 83
Query: 560 AVGDIAIVTNRTKAVDFTQPYIESGLVVV 588
A+ + I R + +DF++P++ G+ ++
Sbjct: 84 AIAPLTITLVREEVIDFSKPFMSLGISIM 112
>pdb|1JDN|A Chain A, Crystal Structure Of Hormone Receptor
pdb|1JDP|A Chain A, Crystal Structure Of Hormone/receptor Complex
pdb|1JDP|B Chain B, Crystal Structure Of Hormone/receptor Complex
Length = 441
Score = 36.2 bits (82), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 33/158 (20%), Positives = 66/158 (41%), Gaps = 4/158 (2%)
Query: 118 IVGPQSAVMAHVLSHLANELQVPLLSFTALDPTLS--PLQYPFFVQTAPNDLYLMSAIAE 175
I+GP A ++ LA+ +P+LS AL +Y + AP + +
Sbjct: 88 ILGPVCEYAAAPVARLASHWDLPMLSAGALAAGFQHKDSEYSHLTRVAPAYAKMGEMMLA 147
Query: 176 MVSYFGWGEVIAIFNDDDQGRNGVTALGDKLAEIRCKISYKSALPPDQSVTETDVRNELV 235
+ + W +++DD RN L + + E+ + +++ + D+ + +
Sbjct: 148 LFRHHHWSRAALVYSDDKLERNCYFTL-EGVHEVFQEEGLHTSIYSFDETKDLDLEDIVR 206
Query: 236 KVRMMEARVIVVHGYSRTGLMVFDVAQRLGMMDSGYVW 273
++ E RV+++ S T + VA R GM Y +
Sbjct: 207 NIQASE-RVVIMCASSDTIRSIMLVAHRHGMTSGDYAF 243
>pdb|2Y7I|A Chain A, Structural Basis For High Arginine Specificity In
Salmonella Typhimurium Periplasmic Binding Protein
Stm4351.
pdb|2Y7I|B Chain B, Structural Basis For High Arginine Specificity In
Salmonella Typhimurium Periplasmic Binding Protein
Stm4351
Length = 229
Score = 35.0 bits (79), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 31/121 (25%), Positives = 51/121 (42%), Gaps = 13/121 (10%)
Query: 483 NGRQLRIGVPNRVSYRDFVFKVNGTDIVHGYCIDVFLAAVRLLPYAVPYKFIPYGDGHKN 542
+ R L G +Y + F V+ + + G+ IDV A + + + N
Sbjct: 4 SARTLHFGTS--ATYAPYEF-VDADNKIVGFDIDVANAVCKEMQAECSFT---------N 51
Query: 543 PTYSELINQITTGVFDAAVGDIAIVTNRTKAVDFTQPYIESGLVVVAPVRKLNSSAWAFL 602
++ LI + FDA + + + R + V F+QPY E GL V RK +A L
Sbjct: 52 QSFDSLIPSLRFKKFDAVIAGMDMTPKREQQVSFSQPYYE-GLSAVVVTRKGAYHTFADL 110
Query: 603 R 603
+
Sbjct: 111 K 111
>pdb|2V3U|A Chain A, Structure Of The Ligand-binding Core Of The Ionotropic
Glutamate Receptor-like Glurdelta2 In Complex With D-
Serine
Length = 265
Score = 33.1 bits (74), Expect = 0.85, Method: Compositional matrix adjust.
Identities = 16/54 (29%), Positives = 22/54 (40%)
Query: 774 CQFSVRGQEFTKSGWGFAFPRDSPLAIDMSTAILTLSENGELQRIHDKWLRKKA 827
C F G G+G A SP S IL L ++G++ + KW K
Sbjct: 208 CSFYTVGNTVADRGYGIALQHGSPYRDVFSQRILELQQSGDMDILKHKWWPKNG 261
Score = 31.6 bits (70), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 20/81 (24%), Positives = 36/81 (44%), Gaps = 3/81 (3%)
Query: 511 HGYCIDVFLAAVRLLPYAVPYKFIP---YGDGHKNPTYSELINQITTGVFDAAVGDIAIV 567
G+ IDV A L + P YG ++ T++ L+ ++ D + + I
Sbjct: 30 QGFSIDVLDALSNYLGFNYEIYVAPDHKYGSPQEDGTWNGLVGELVFKRADIGISALTIT 89
Query: 568 TNRTKAVDFTQPYIESGLVVV 588
+R VDFT Y++ + V+
Sbjct: 90 PDRENVVDFTTRYMDYSVGVL 110
>pdb|1II5|A Chain A, Crystal Structure Of The Glur0 Ligand Binding Core Complex
With L- Glutamate
Length = 233
Score = 32.7 bits (73), Expect = 0.98, Method: Compositional matrix adjust.
Identities = 35/137 (25%), Positives = 55/137 (40%), Gaps = 23/137 (16%)
Query: 487 LRIGVPNRVSYRDFVFKVNGTDIVH-GYCIDVFLAAVRLLPYAVPYKFIPYGDGHKNPTY 545
L++GV V FVF G + G +DV+ A + Y + +
Sbjct: 6 LKVGV---VGNPPFVFYGEGKNAAFTGISLDVWRAVAESQKWNSEY--------VRQNSI 54
Query: 546 SELINQITTGVFDAAVGDIAIVTNRT--KAVDFTQPYIESGLVVVAP---------VRKL 594
S I + G D +G I++ R + + FTQPY SG+ ++ P V L
Sbjct: 55 SAGITAVAEGELDILIGPISVTPERAAIEGITFTQPYFSSGIGLLIPGTATPLFRSVGDL 114
Query: 595 NSSAWAFLRPFTPLMWA 611
+ A +R T + WA
Sbjct: 115 KNKEVAVVRDTTAVDWA 131
>pdb|1IIT|A Chain A, Glur0 Ligand Binding Core Complex With L-Serine
pdb|1IIW|A Chain A, Glur0 Ligand Binding Core: Closed-Cleft Ligand-Free
Structure
Length = 232
Score = 32.7 bits (73), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 35/137 (25%), Positives = 55/137 (40%), Gaps = 23/137 (16%)
Query: 487 LRIGVPNRVSYRDFVFKVNGTDIVH-GYCIDVFLAAVRLLPYAVPYKFIPYGDGHKNPTY 545
L++GV V FVF G + G +DV+ A + Y + +
Sbjct: 6 LKVGV---VGNPPFVFYGEGKNAAFTGISLDVWRAVAESQKWNSEY--------VRQNSI 54
Query: 546 SELINQITTGVFDAAVGDIAIVTNRT--KAVDFTQPYIESGLVVVAP---------VRKL 594
S I + G D +G I++ R + + FTQPY SG+ ++ P V L
Sbjct: 55 SAGITAVAEGELDILIGPISVTPERAAIEGITFTQPYFSSGIGLLIPGTATPLFRSVGDL 114
Query: 595 NSSAWAFLRPFTPLMWA 611
+ A +R T + WA
Sbjct: 115 KNKEVAVVRDTTAVDWA 131
>pdb|1NKS|A Chain A, Adenylate Kinase From Sulfolobus Acidocaldarius
pdb|1NKS|B Chain B, Adenylate Kinase From Sulfolobus Acidocaldarius
pdb|1NKS|C Chain C, Adenylate Kinase From Sulfolobus Acidocaldarius
pdb|1NKS|D Chain D, Adenylate Kinase From Sulfolobus Acidocaldarius
pdb|1NKS|E Chain E, Adenylate Kinase From Sulfolobus Acidocaldarius
pdb|1NKS|F Chain F, Adenylate Kinase From Sulfolobus Acidocaldarius
Length = 194
Score = 32.3 bits (72), Expect = 1.4, Method: Composition-based stats.
Identities = 12/33 (36%), Positives = 23/33 (69%)
Query: 918 PSNVYMIEAEPKNGSARINRDISQEREQYNNET 950
PS ++++EA+PK +R RD ++ R Y++E+
Sbjct: 116 PSVIFLLEADPKIILSRQKRDTTRNRNDYSDES 148
>pdb|2YJP|A Chain A, Crystal Structure Of The Solute Receptors For L-Cysteine
Of Neisseria Gonorrhoeae
pdb|2YJP|B Chain B, Crystal Structure Of The Solute Receptors For L-Cysteine
Of Neisseria Gonorrhoeae
pdb|2YJP|C Chain C, Crystal Structure Of The Solute Receptors For L-Cysteine
Of Neisseria Gonorrhoeae
Length = 291
Score = 32.0 bits (71), Expect = 1.7, Method: Composition-based stats.
Identities = 14/45 (31%), Positives = 23/45 (51%)
Query: 549 INQITTGVFDAAVGDIAIVTNRTKAVDFTQPYIESGLVVVAPVRK 593
+ + +G D + + R +AVDF PY++ L VV+P K
Sbjct: 110 VEYVRSGKVDLILANFTQTPERAEAVDFADPYMKVALGVVSPKNK 154
>pdb|3MPL|A Chain A, Crystal Structure Of Bordetella Pertussis Bvgs Vft2 Domain
(Double Mutant F375eQ461E)
Length = 267
Score = 31.6 bits (70), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 15/45 (33%), Positives = 28/45 (62%), Gaps = 1/45 (2%)
Query: 544 TYSELINQITTGVFDAAVGDIAIVTNRTKAVDFTQPYIESGLVVV 588
T ELI ++ +G D A G + + + R + F++PY+ +G+V+V
Sbjct: 80 TVEELIAKLRSGEADMA-GALEVNSARESFLSFSRPYVRNGMVIV 123
>pdb|2V3T|A Chain A, Structure Of The Ligand-Binding Core Of The Ionotropic
Glutamate Receptor-Like Glurdelta2 In The Apo Form
pdb|2V3T|B Chain B, Structure Of The Ligand-Binding Core Of The Ionotropic
Glutamate Receptor-Like Glurdelta2 In The Apo Form
Length = 265
Score = 31.6 bits (70), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 16/54 (29%), Positives = 21/54 (38%)
Query: 774 CQFSVRGQEFTKSGWGFAFPRDSPLAIDMSTAILTLSENGELQRIHDKWLRKKA 827
C F G G+G A SP S IL L ++G+ + KW K
Sbjct: 208 CSFYTVGNTVADRGYGIALQHGSPYRDVFSQRILELQQSGDXDILKHKWWPKNG 261
Score = 30.4 bits (67), Expect = 4.8, Method: Compositional matrix adjust.
Identities = 20/81 (24%), Positives = 35/81 (43%), Gaps = 3/81 (3%)
Query: 511 HGYCIDVFLAAVRLLPYAVPYKFIP---YGDGHKNPTYSELINQITTGVFDAAVGDIAIV 567
G+ IDV A L + P YG ++ T++ L+ ++ D + + I
Sbjct: 30 QGFSIDVLDALSNYLGFNYEIYVAPDHKYGSPQEDGTWNGLVGELVFKRADIGISALTIT 89
Query: 568 TNRTKAVDFTQPYIESGLVVV 588
+R VDFT Y + + V+
Sbjct: 90 PDRENVVDFTTRYXDYSVGVL 110
>pdb|2IEE|A Chain A, Crystal Structure Of Yckb_bacsu From Bacillus Subtilis.
Northeast Structural Genomics Consortium Target Sr574.
pdb|2IEE|B Chain B, Crystal Structure Of Yckb_bacsu From Bacillus Subtilis.
Northeast Structural Genomics Consortium Target Sr574
Length = 271
Score = 31.2 bits (69), Expect = 2.8, Method: Composition-based stats.
Identities = 21/76 (27%), Positives = 35/76 (46%), Gaps = 9/76 (11%)
Query: 505 NGTDIVHGYCIDVFLAAVRLLPYAVPYKFIPYGDGHKNPTYSELINQITTGVFDAAVGDI 564
+G+D + GY ++V A + L V +K DG + + +G DAA DI
Sbjct: 41 SGSDKLTGYEVEVVREAAKRLGLKVEFKEXGI-DGX--------LTAVNSGQVDAAANDI 91
Query: 565 AIVTNRTKAVDFTQPY 580
+ +R + F+ PY
Sbjct: 92 DVTKDREEKFAFSTPY 107
>pdb|3MPK|A Chain A, Crystal Structure Of Bordetella Pertussis Bvgs Periplasmic
Vft2 Domain
Length = 267
Score = 30.8 bits (68), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 15/45 (33%), Positives = 28/45 (62%), Gaps = 1/45 (2%)
Query: 544 TYSELINQITTGVFDAAVGDIAIVTNRTKAVDFTQPYIESGLVVV 588
T ELI ++ +G D A G + + + R + F++PY+ +G+V+V
Sbjct: 80 TVEELIAKLRSGEADMA-GALFVNSARESFLSFSRPYVRNGMVIV 123
>pdb|4GNR|A Chain A, 1.0 Angstrom Resolution Crystal Structure Of The
Branched-Chain Amino Acid Transporter Substrate Binding
Protein Livj From Streptococcus Pneumoniae Str. Canada
Mdr_19a In Complex With Isoleucine
Length = 353
Score = 30.4 bits (67), Expect = 4.6, Method: Compositional matrix adjust.
Identities = 45/217 (20%), Positives = 97/217 (44%), Gaps = 16/217 (7%)
Query: 53 GAIFSFGTVNGQVSRIAMKAAQDDINSDPRVLGGRKLSITMHDAKFNGFLSIMGALQFM- 111
G++ ++GT + +++A+ D+IN+ + G+++ + D K + +
Sbjct: 18 GSLAAYGTAEQKGAQLAV----DEINA-AGGIDGKQIEVVDKDNKSETAEAASVTTNLVT 72
Query: 112 ETDTLAIVGPQSAVMAHVLSHLANELQVPLLSFTALDPTLSPLQYPFFVQTAPNDLYLMS 171
++ A+VGP ++ A + VPL+S +A L+ Q F+ T D +
Sbjct: 73 QSKVSAVVGPATSGATAAAVANATKAGVPLISPSATQDGLTKGQDYLFIGTF-QDSFQGK 131
Query: 172 AIAEMVSYFGWGEVIAIFNDDDQGRNGVTALGDKLAEIRCKISYKSALPPDQS--VTETD 229
I+ VS + + ++ D+ + +A+ + SYK + D++ +TD
Sbjct: 132 IISNYVSEKLNAKKVVLYTDN------ASDYAKGIAK-SFRESYKGEIVADETFVAGDTD 184
Query: 230 VRNELVKVRMMEARVIVVHGYSRTGLMVFDVAQRLGM 266
+ L K++ + IVV GY + + A+ +G+
Sbjct: 185 FQAALTKMKGKDFDAIVVPGYYNEAGKIVNQARGMGI 221
>pdb|4F3S|A Chain A, Crystal Structure Of Periplasmic D-Alanine Abc Transporter
From Salmonella Enterica
Length = 255
Score = 30.0 bits (66), Expect = 6.7, Method: Composition-based stats.
Identities = 12/41 (29%), Positives = 22/41 (53%)
Query: 549 INQITTGVFDAAVGDIAIVTNRTKAVDFTQPYIESGLVVVA 589
+ + +G D A I+I R K +DF++PY + +V+
Sbjct: 61 LGAVASGQADVAFSGISITDKRKKVIDFSEPYYINSFYLVS 101
>pdb|4DZ1|A Chain A, Crystal Structure Of Dals, An Atp Binding Cassette
Transporter For D- Alanine From Salmonella Enterica
Length = 259
Score = 30.0 bits (66), Expect = 6.8, Method: Composition-based stats.
Identities = 12/41 (29%), Positives = 22/41 (53%)
Query: 549 INQITTGVFDAAVGDIAIVTNRTKAVDFTQPYIESGLVVVA 589
+ + +G D A I+I R K +DF++PY + +V+
Sbjct: 81 LGAVASGQADVAFSGISITDKRKKVIDFSEPYYINSFYLVS 121
>pdb|2Q2C|A Chain A, Crystal Structures Of The Arginine-, Lysine-,
Histidine-Binding Protein Artj From The Thermophilic
Bacterium Geobacillus Stearothermophilus
pdb|2Q2C|B Chain B, Crystal Structures Of The Arginine-, Lysine-,
Histidine-Binding Protein Artj From The Thermophilic
Bacterium Geobacillus Stearothermophilus
pdb|2Q2C|C Chain C, Crystal Structures Of The Arginine-, Lysine-,
Histidine-Binding Protein Artj From The Thermophilic
Bacterium Geobacillus Stearothermophilus
pdb|2Q2C|D Chain D, Crystal Structures Of The Arginine-, Lysine-,
Histidine-Binding Protein Artj From The Thermophilic
Bacterium Geobacillus Stearothermophilus
pdb|2PVU|A Chain A, Crystal Structures Of The Arginine-, Lysine-,
Histidine-Binding Protein Artj From The Thermophilic
Bacterium Geobacillus Stearothermophilus
pdb|2Q2A|A Chain A, Crystal Structures Of The Arginine-, Lysine-, Histidine-
Binding Protein Artj From The Thermophilic Bacterium
Geobacillus Stearothermophilus
pdb|2Q2A|B Chain B, Crystal Structures Of The Arginine-, Lysine-, Histidine-
Binding Protein Artj From The Thermophilic Bacterium
Geobacillus Stearothermophilus
pdb|2Q2A|C Chain C, Crystal Structures Of The Arginine-, Lysine-, Histidine-
Binding Protein Artj From The Thermophilic Bacterium
Geobacillus Stearothermophilus
pdb|2Q2A|D Chain D, Crystal Structures Of The Arginine-, Lysine-, Histidine-
Binding Protein Artj From The Thermophilic Bacterium
Geobacillus Stearothermophilus
Length = 272
Score = 29.6 bits (65), Expect = 8.2, Method: Composition-based stats.
Identities = 12/46 (26%), Positives = 23/46 (50%)
Query: 781 QEFTKSGWGFAFPRDSPLAIDMSTAILTLSENGELQRIHDKWLRKK 826
+ F +G FP++S L + A+ + +G+ I+ KW K+
Sbjct: 219 KNFASEYYGMIFPKNSELKAKVDEALKNVINSGKYTEIYKKWFGKE 264
>pdb|3QEL|B Chain B, Crystal Structure Of Amino Terminal Domains Of The Nmda
Receptor Subunit Glun1 And Glun2b In Complex With
Ifenprodil
pdb|3QEL|D Chain D, Crystal Structure Of Amino Terminal Domains Of The Nmda
Receptor Subunit Glun1 And Glun2b In Complex With
Ifenprodil
pdb|3QEM|B Chain B, Crystal Structure Of Amino Terminal Domains Of The Nmda
Receptor Subunit Glun1 And Glun2b In Complex With Ro
25-6981
pdb|3QEM|D Chain D, Crystal Structure Of Amino Terminal Domains Of The Nmda
Receptor Subunit Glun1 And Glun2b In Complex With Ro
25-6981
Length = 364
Score = 29.6 bits (65), Expect = 8.8, Method: Compositional matrix adjust.
Identities = 16/66 (24%), Positives = 36/66 (54%), Gaps = 5/66 (7%)
Query: 222 DQSVTETD--VRNELVKVRMMEARVIVVHGYSRTGLMVFDVAQRLGMMDSGYVWIATTWL 279
D S+ + D ++N+L K +++ +I+++ +F+VA +G+ GY WI + +
Sbjct: 176 DMSLDDGDSKIQNQLKK---LQSPIILLYCTKEEATYIFEVANSVGLTGYGYTWIVPSLV 232
Query: 280 STFIDS 285
+ D+
Sbjct: 233 AGDTDT 238
>pdb|3JPW|A Chain A, Crystal Structure Of Amino Terminal Domain Of The Nmda
Receptor Subunit Nr2b
pdb|3JPY|A Chain A, Crystal Structure Of The Zinc-Bound Amino Terminal Domain
Of The Nmda Receptor Subunit Nr2b
Length = 363
Score = 29.6 bits (65), Expect = 8.8, Method: Compositional matrix adjust.
Identities = 16/66 (24%), Positives = 36/66 (54%), Gaps = 5/66 (7%)
Query: 222 DQSVTETD--VRNELVKVRMMEARVIVVHGYSRTGLMVFDVAQRLGMMDSGYVWIATTWL 279
D S+ + D ++N+L K +++ +I+++ +F+VA +G+ GY WI + +
Sbjct: 175 DMSLDDGDSKIQNQLKK---LQSPIILLYCTKEEATYIFEVANSVGLTGYGYTWIVPSLV 231
Query: 280 STFIDS 285
+ D+
Sbjct: 232 AGDTDT 237
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.321 0.136 0.411
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 25,157,179
Number of Sequences: 62578
Number of extensions: 975062
Number of successful extensions: 2098
Number of sequences better than 100.0: 110
Number of HSP's better than 100.0 without gapping: 90
Number of HSP's successfully gapped in prelim test: 20
Number of HSP's that attempted gapping in prelim test: 1873
Number of HSP's gapped (non-prelim): 200
length of query: 953
length of database: 14,973,337
effective HSP length: 108
effective length of query: 845
effective length of database: 8,214,913
effective search space: 6941601485
effective search space used: 6941601485
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 56 (26.2 bits)