Query 002211
Match_columns 953
No_of_seqs 664 out of 3833
Neff 9.5
Searched_HMMs 29240
Date Mon Mar 25 17:08:44 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/002211.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/002211hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3kg2_A Glutamate receptor 2; I 100.0 1.9E-99 7E-104 944.5 64.6 762 48-876 1-814 (823)
2 3o21_A Glutamate receptor 3; p 100.0 2.5E-52 8.6E-57 471.4 42.4 368 47-443 3-380 (389)
3 3om0_A Glutamate receptor, ion 100.0 7.9E-51 2.7E-55 461.2 36.5 369 48-444 3-382 (393)
4 4f11_A Gamma-aminobutyric acid 100.0 1.9E-50 6.5E-55 464.4 37.2 387 45-472 10-422 (433)
5 3h6g_A Glutamate receptor, ion 100.0 3.7E-50 1.3E-54 456.1 37.7 371 47-445 2-385 (395)
6 4gpa_A Glutamate receptor 4; P 100.0 1.9E-49 6.5E-54 449.7 43.2 374 46-447 2-382 (389)
7 3hsy_A Glutamate receptor 2; l 100.0 6E-50 2.1E-54 450.5 37.8 364 48-442 1-373 (376)
8 1jdp_A NPR-C, atrial natriuret 100.0 6.3E-49 2.2E-53 452.7 42.2 363 46-439 6-397 (441)
9 3saj_A Glutamate receptor 1; r 100.0 3.4E-49 1.2E-53 445.9 37.7 367 45-447 6-381 (384)
10 2e4u_A Metabotropic glutamate 100.0 2.6E-48 9E-53 459.2 42.7 390 45-480 10-486 (555)
11 3sm9_A Mglur3, metabotropic gl 100.0 1.1E-48 3.8E-53 452.2 38.1 367 45-435 9-462 (479)
12 1dp4_A Atrial natriuretic pept 100.0 3E-48 1E-52 446.6 38.3 360 48-438 1-398 (435)
13 3ks9_A Mglur1, metabotropic gl 100.0 6E-48 2.1E-52 448.1 39.0 391 45-477 13-496 (496)
14 3qek_A NMDA glutamate receptor 100.0 6.1E-48 2.1E-52 435.9 34.3 338 46-436 2-369 (384)
15 3mq4_A Mglur7, metabotropic gl 100.0 2.9E-48 1E-52 450.1 26.0 369 45-435 12-467 (481)
16 3i45_A Twin-arginine transloca 100.0 2E-41 6.9E-46 383.2 34.6 358 47-448 3-371 (387)
17 4f06_A Extracellular ligand-bi 100.0 1.9E-41 6.6E-46 380.5 32.1 348 46-434 2-360 (371)
18 3h5l_A Putative branched-chain 100.0 1.7E-41 5.9E-46 388.0 29.9 351 45-434 10-394 (419)
19 3ipc_A ABC transporter, substr 100.0 3E-40 1E-44 369.2 32.2 345 48-437 1-352 (356)
20 4gnr_A ABC transporter substra 100.0 8.2E-40 2.8E-44 365.2 33.1 339 45-434 3-351 (353)
21 3qel_B Glutamate [NMDA] recept 100.0 4.1E-40 1.4E-44 366.5 27.4 340 47-442 2-356 (364)
22 3td9_A Branched chain amino ac 100.0 1.5E-39 5E-44 365.1 32.1 342 46-438 13-364 (366)
23 3i09_A Periplasmic branched-ch 100.0 4.3E-39 1.5E-43 362.5 34.7 334 47-426 2-342 (375)
24 1usg_A Leucine-specific bindin 100.0 6.2E-39 2.1E-43 357.1 32.4 340 48-431 1-345 (346)
25 3n0w_A ABC branched chain amin 100.0 6.9E-39 2.3E-43 361.3 32.8 335 46-426 3-346 (379)
26 3hut_A Putative branched-chain 100.0 1.1E-38 3.7E-43 356.9 33.5 345 47-437 2-354 (358)
27 3lkb_A Probable branched-chain 100.0 4.3E-39 1.5E-43 364.8 27.7 353 46-441 4-379 (392)
28 3eaf_A ABC transporter, substr 100.0 1.8E-38 6.3E-43 359.3 32.6 351 47-438 2-373 (391)
29 3n0x_A Possible substrate bind 100.0 5.1E-39 1.8E-43 361.5 27.7 333 47-426 2-348 (374)
30 4evq_A Putative ABC transporte 100.0 4.4E-38 1.5E-42 354.4 32.6 346 45-437 12-364 (375)
31 3lop_A Substrate binding perip 100.0 3.7E-38 1.3E-42 353.3 29.7 341 47-430 3-356 (364)
32 4eyg_A Twin-arginine transloca 100.0 1.3E-37 4.3E-42 349.6 32.7 347 46-437 3-360 (368)
33 3sg0_A Extracellular ligand-bi 100.0 1.4E-36 4.7E-41 343.6 24.2 344 45-431 23-385 (386)
34 1pea_A Amidase operon; gene re 100.0 7.2E-35 2.5E-39 329.1 36.2 348 46-434 4-357 (385)
35 3snr_A Extracellular ligand-bi 100.0 5.4E-35 1.8E-39 327.4 27.7 340 46-430 4-360 (362)
36 2h4a_A YRAM (HI1655); perplasm 100.0 8.2E-30 2.8E-34 276.9 19.5 307 51-431 2-317 (325)
37 3ckm_A YRAM (HI1655), LPOA; pe 100.0 5.4E-29 1.8E-33 273.8 20.7 313 49-433 2-321 (327)
38 1yae_A Glutamate receptor, ion 99.9 3.8E-27 1.3E-31 257.5 15.9 273 482-843 10-305 (312)
39 3g3k_A Glutamate receptor, ion 99.9 4.5E-25 1.5E-29 234.2 15.6 235 483-829 2-258 (259)
40 1pb7_A N-methyl-D-aspartate re 99.9 1.2E-25 4E-30 242.8 11.1 236 485-830 41-292 (292)
41 4h5g_A Amino acid ABC superfam 99.9 2.4E-24 8.4E-29 226.0 18.3 220 485-824 12-237 (243)
42 2a5s_A N-methyl-D-aspartate re 99.9 1.7E-25 5.7E-30 240.7 7.2 241 481-829 25-283 (284)
43 2rc8_A Glutamate [NMDA] recept 99.9 1.5E-24 5.3E-29 234.4 12.4 215 509-829 67-293 (294)
44 4gvo_A LMO2349 protein; struct 99.9 5.2E-24 1.8E-28 223.5 14.9 222 483-824 7-235 (243)
45 3kzg_A Arginine 3RD transport 99.9 4.8E-23 1.6E-27 215.2 18.1 218 485-825 3-231 (237)
46 2v3u_A Glutamate receptor delt 99.9 8.1E-23 2.8E-27 217.4 18.0 235 483-829 1-264 (265)
47 3i6v_A Periplasmic His/Glu/Gln 99.9 5.4E-23 1.9E-27 214.1 16.2 220 484-833 4-226 (232)
48 3k4u_A Binding component of AB 99.9 1.5E-22 5.3E-27 212.6 18.6 223 483-824 3-228 (245)
49 4f3p_A Glutamine-binding perip 99.9 2.1E-22 7.3E-27 212.1 19.8 221 482-825 21-243 (249)
50 1mqi_A Glutamate receptor 2; G 99.9 1.6E-22 5.3E-27 215.0 17.5 232 484-829 3-262 (263)
51 3del_B Arginine binding protei 99.9 2.8E-22 9.6E-27 210.1 18.7 223 483-830 9-238 (242)
52 3hv1_A Polar amino acid ABC up 99.9 4.9E-22 1.7E-26 211.8 19.0 225 483-828 19-252 (268)
53 3kbr_A Cyclohexadienyl dehydra 99.9 2.4E-22 8E-27 210.2 15.5 222 483-824 13-237 (239)
54 3tql_A Arginine-binding protei 99.9 9.3E-22 3.2E-26 203.6 18.6 218 485-823 2-227 (227)
55 1ii5_A SLR1257 protein; membra 99.9 2.2E-21 7.5E-26 201.7 19.9 218 484-824 3-226 (233)
56 4eq9_A ABC transporter substra 99.9 1.3E-21 4.5E-26 205.4 16.8 223 484-827 7-238 (246)
57 3h7m_A Sensor protein; histidi 99.9 2.7E-21 9.2E-26 201.2 18.1 219 483-824 9-230 (234)
58 3mpk_A Virulence sensor protei 99.9 3E-21 1E-25 205.6 17.9 219 483-824 30-252 (267)
59 1lst_A Lysine, arginine, ornit 99.9 3.8E-21 1.3E-25 200.9 17.7 221 484-824 3-232 (239)
60 1wdn_A GLNBP, glutamine bindin 99.9 6.8E-21 2.3E-25 196.9 19.0 217 485-824 3-222 (226)
61 4dz1_A DALS D-alanine transpor 99.9 8.3E-21 2.8E-25 201.2 18.0 222 483-824 27-253 (259)
62 2y7i_A STM4351; arginine-bindi 99.9 1.4E-20 4.6E-25 195.2 19.2 218 483-824 4-228 (229)
63 2iee_A ORF2, probable ABC tran 99.8 3.7E-21 1.3E-25 205.3 13.1 219 483-824 19-246 (271)
64 2pvu_A ARTJ; basic amino acid 99.8 5.7E-20 2E-24 196.3 19.2 241 461-824 15-262 (272)
65 2q88_A EHUB, putative ABC tran 99.8 3E-20 1E-24 196.6 15.9 221 484-823 12-239 (257)
66 3qax_A Probable ABC transporte 99.8 6.1E-20 2.1E-24 195.3 18.5 218 483-824 29-253 (268)
67 2pyy_A Ionotropic glutamate re 99.8 4E-20 1.4E-24 191.4 15.4 218 485-824 3-222 (228)
68 4i62_A Amino acid ABC transpor 99.8 7.6E-20 2.6E-24 194.7 17.5 220 484-824 38-264 (269)
69 1xt8_A Putative amino-acid tra 99.8 1.1E-19 3.7E-24 196.3 16.9 218 484-824 43-265 (292)
70 2yjp_A Putative ABC transporte 99.8 1.4E-19 4.8E-24 195.3 17.2 217 485-824 55-276 (291)
71 2vha_A Periplasmic binding tra 99.8 1.9E-19 6.5E-24 193.8 17.3 220 484-824 16-248 (287)
72 2yln_A Putative ABC transporte 99.8 1.8E-19 6.2E-24 193.5 16.4 216 484-824 56-277 (283)
73 2v25_A Major cell-binding fact 99.7 9.1E-18 3.1E-22 177.4 13.4 215 484-823 37-258 (259)
74 3n5l_A Binding protein compone 98.8 9.5E-09 3.2E-13 110.7 11.2 215 484-823 3-242 (310)
75 3p7i_A PHND, subunit of alkylp 98.7 4.8E-08 1.6E-12 105.5 13.0 216 483-823 12-251 (321)
76 2ozz_A Hypothetical protein YH 98.6 1.5E-07 5.1E-12 94.3 11.9 182 507-823 27-223 (231)
77 2h3h_A Sugar ABC transporter, 98.5 6.4E-06 2.2E-10 88.8 22.1 208 50-277 2-216 (313)
78 3ksm_A ABC-type sugar transpor 98.5 4.6E-06 1.6E-10 88.0 20.2 209 50-277 1-221 (276)
79 2rjo_A Twin-arginine transloca 98.5 1.3E-05 4.4E-10 87.3 22.6 205 48-267 4-222 (332)
80 3brq_A HTH-type transcriptiona 98.4 5.4E-06 1.8E-10 88.5 18.5 211 47-277 17-236 (296)
81 3d02_A Putative LACI-type tran 98.4 1.9E-05 6.5E-10 84.6 22.9 211 48-277 3-223 (303)
82 2qh8_A Uncharacterized protein 98.4 8.5E-06 2.9E-10 87.4 19.8 202 47-265 6-216 (302)
83 3brs_A Periplasmic binding pro 98.4 1.5E-05 5.1E-10 84.8 20.7 210 49-277 5-224 (289)
84 3rot_A ABC sugar transporter, 98.4 9.7E-06 3.3E-10 86.7 18.9 205 49-269 3-215 (297)
85 1tjy_A Sugar transport protein 98.4 3.2E-05 1.1E-09 83.4 22.8 206 51-277 5-222 (316)
86 2fn9_A Ribose ABC transporter, 98.4 2.2E-05 7.4E-10 83.5 20.9 197 50-266 3-215 (290)
87 2qu7_A Putative transcriptiona 98.4 2.7E-06 9.4E-11 90.5 13.5 204 47-272 6-217 (288)
88 1dbq_A Purine repressor; trans 98.3 1.8E-05 6.3E-10 84.1 19.7 207 47-272 5-217 (289)
89 2x7x_A Sensor protein; transfe 98.3 4.7E-05 1.6E-09 82.5 21.1 211 47-277 4-222 (325)
90 3l49_A ABC sugar (ribose) tran 98.3 3.3E-05 1.1E-09 82.1 19.6 209 48-277 4-224 (291)
91 2vk2_A YTFQ, ABC transporter p 98.3 6.2E-05 2.1E-09 80.7 21.5 207 49-272 2-221 (306)
92 2fvy_A D-galactose-binding per 98.2 6E-05 2E-09 80.9 21.0 204 50-265 3-226 (309)
93 3o1i_D Periplasmic protein TOR 98.2 2.3E-05 7.9E-10 83.9 17.6 205 48-267 4-218 (304)
94 3lkv_A Uncharacterized conserv 98.2 4.4E-05 1.5E-09 81.7 19.6 190 46-251 5-203 (302)
95 3gbv_A Putative LACI-family tr 98.2 4.2E-05 1.4E-09 81.8 19.5 212 46-277 5-232 (304)
96 3c3k_A Alanine racemase; struc 98.2 5.7E-05 1.9E-09 80.1 19.7 204 47-275 6-217 (285)
97 2iks_A DNA-binding transcripti 98.2 8.5E-05 2.9E-09 79.1 20.7 210 47-277 18-233 (293)
98 3lft_A Uncharacterized protein 98.2 0.00013 4.4E-09 77.8 22.1 200 49-266 2-210 (295)
99 3h75_A Periplasmic sugar-bindi 98.2 0.00018 6.1E-09 78.8 23.4 214 49-277 3-241 (350)
100 3l6u_A ABC-type sugar transpor 98.2 0.00011 3.9E-09 78.0 21.0 209 47-277 6-228 (293)
101 2h0a_A TTHA0807, transcription 98.2 8.2E-06 2.8E-10 86.1 11.7 203 51-275 1-213 (276)
102 2ioy_A Periplasmic sugar-bindi 98.2 0.0002 6.8E-09 75.7 22.5 205 51-277 3-216 (283)
103 2o20_A Catabolite control prot 98.1 4.9E-05 1.7E-09 82.6 18.0 209 47-275 61-272 (332)
104 3g1w_A Sugar ABC transporter; 98.1 0.00021 7.3E-09 76.4 22.8 211 49-277 4-221 (305)
105 3d8u_A PURR transcriptional re 98.1 7.1E-05 2.4E-09 78.8 18.6 206 49-275 3-214 (275)
106 8abp_A L-arabinose-binding pro 98.1 0.0001 3.5E-09 78.9 19.9 215 48-277 1-232 (306)
107 2fep_A Catabolite control prot 98.1 8.3E-05 2.8E-09 79.0 18.6 211 47-277 14-231 (289)
108 3clk_A Transcription regulator 98.1 2E-05 6.9E-10 83.8 13.5 206 47-272 6-215 (290)
109 2rgy_A Transcriptional regulat 98.1 4.2E-05 1.4E-09 81.3 15.9 206 47-272 6-219 (290)
110 3dbi_A Sugar-binding transcrip 98.1 6.8E-05 2.3E-09 81.7 17.8 212 47-277 59-278 (338)
111 3bbl_A Regulatory protein of L 98.1 4.2E-05 1.4E-09 81.2 15.4 209 49-277 4-224 (287)
112 2hsg_A Glucose-resistance amyl 98.1 4.3E-05 1.5E-09 83.0 15.4 212 46-277 57-275 (332)
113 1jx6_A LUXP protein; protein-l 98.1 0.00023 7.9E-09 77.6 21.2 208 46-266 40-258 (342)
114 3m9w_A D-xylose-binding peripl 98.0 0.00031 1.1E-08 75.4 21.6 200 49-267 2-213 (313)
115 3k4h_A Putative transcriptiona 98.0 9.4E-05 3.2E-09 78.6 17.2 207 47-272 6-222 (292)
116 3o74_A Fructose transport syst 98.0 0.00022 7.4E-09 74.8 19.4 207 50-277 3-215 (272)
117 3ctp_A Periplasmic binding pro 98.0 4.8E-05 1.6E-09 82.6 14.2 203 47-275 58-264 (330)
118 1qpz_A PURA, protein (purine n 97.9 0.00028 9.5E-09 76.9 19.3 207 48-273 57-269 (340)
119 3egc_A Putative ribose operon 97.9 0.0001 3.6E-09 78.3 14.1 211 47-277 6-222 (291)
120 3hcw_A Maltose operon transcri 97.9 0.00085 2.9E-08 71.3 21.2 208 47-275 5-225 (295)
121 3gv0_A Transcriptional regulat 97.9 0.00037 1.3E-08 73.8 18.1 208 47-274 6-220 (288)
122 3kjx_A Transcriptional regulat 97.8 0.00042 1.5E-08 75.5 18.5 210 46-275 65-280 (344)
123 3gyb_A Transcriptional regulat 97.8 7E-05 2.4E-09 79.1 11.8 205 48-277 4-212 (280)
124 3k9c_A Transcriptional regulat 97.8 0.00073 2.5E-08 71.5 19.4 206 46-274 9-217 (289)
125 3uif_A Sulfonate ABC transport 97.8 0.00014 4.9E-09 79.5 13.1 108 700-809 109-228 (348)
126 2x26_A Periplasmic aliphatic s 97.8 0.00026 8.7E-09 75.9 14.6 121 701-824 96-232 (308)
127 3jy6_A Transcriptional regulat 97.8 0.0012 4.2E-08 69.2 19.7 206 47-276 5-215 (276)
128 2dri_A D-ribose-binding protei 97.7 0.0032 1.1E-07 65.7 22.7 205 51-277 3-215 (271)
129 3tb6_A Arabinose metabolism tr 97.7 0.00047 1.6E-08 73.3 16.4 210 49-275 15-234 (298)
130 3ksx_A Nitrate transport prote 97.7 0.00024 8.1E-09 76.8 14.2 93 700-795 121-219 (324)
131 3qk7_A Transcriptional regulat 97.7 0.00039 1.3E-08 73.9 15.5 208 48-277 5-223 (294)
132 3kke_A LACI family transcripti 97.7 0.00063 2.2E-08 72.6 17.1 205 46-272 12-227 (303)
133 3bil_A Probable LACI-family tr 97.7 0.00094 3.2E-08 72.9 18.6 204 47-272 64-271 (348)
134 3e3m_A Transcriptional regulat 97.7 0.0022 7.6E-08 70.1 21.6 209 47-275 68-283 (355)
135 3un6_A Hypothetical protein sa 97.7 7.7E-05 2.6E-09 81.4 9.7 121 700-824 143-283 (341)
136 2f5x_A BUGD; periplasmic bindi 97.7 0.00049 1.7E-08 73.2 15.1 121 700-822 121-275 (312)
137 3g85_A Transcriptional regulat 97.7 0.00026 8.7E-09 75.1 12.9 208 46-275 8-221 (289)
138 3cs3_A Sugar-binding transcrip 97.7 0.0019 6.4E-08 67.8 19.4 199 47-275 6-210 (277)
139 3h5o_A Transcriptional regulat 97.7 0.0024 8.2E-08 69.3 20.6 207 47-275 60-272 (339)
140 3uug_A Multiple sugar-binding 97.6 0.0018 6.1E-08 70.0 19.4 206 48-270 2-232 (330)
141 1byk_A Protein (trehalose oper 97.6 0.0022 7.4E-08 66.4 19.0 198 51-277 4-205 (255)
142 1gud_A ALBP, D-allose-binding 97.6 0.0077 2.6E-07 63.5 23.1 209 51-277 3-227 (288)
143 3e61_A Putative transcriptiona 97.6 0.00093 3.2E-08 70.2 15.4 200 47-275 6-210 (277)
144 2qpq_A Protein BUG27; alpha/be 97.6 0.00077 2.6E-08 71.5 14.6 121 700-822 112-266 (301)
145 3huu_A Transcription regulator 97.5 0.002 6.7E-08 68.8 17.4 206 47-277 20-238 (305)
146 2fqx_A Membrane lipoprotein TM 97.5 0.008 2.7E-07 64.4 22.1 207 48-275 3-220 (318)
147 2dvz_A BUGE, putative exported 97.5 0.00075 2.6E-08 71.9 13.6 121 700-822 125-279 (314)
148 3qsl_A Putative exported prote 97.4 0.00067 2.3E-08 73.9 12.4 137 522-773 59-205 (346)
149 4fe7_A Xylose operon regulator 97.4 0.0039 1.3E-07 69.7 18.8 212 45-277 21-239 (412)
150 3hs3_A Ribose operon repressor 97.4 0.0024 8.3E-08 67.0 16.1 199 46-275 7-211 (277)
151 1jye_A Lactose operon represso 97.4 0.0082 2.8E-07 65.3 20.0 205 47-275 59-271 (349)
152 3jvd_A Transcriptional regulat 97.3 0.0058 2E-07 66.0 18.4 196 47-272 62-261 (333)
153 3ix1_A N-formyl-4-amino-5-amin 97.3 0.00041 1.4E-08 74.1 8.8 78 508-593 15-96 (302)
154 3s99_A Basic membrane lipoprot 97.3 0.014 4.9E-07 63.1 21.0 202 45-266 22-230 (356)
155 2hqb_A Transcriptional activat 97.2 0.043 1.5E-06 58.0 23.1 195 48-265 4-204 (296)
156 3miz_A Putative transcriptiona 97.1 0.00065 2.2E-08 72.4 7.5 206 46-274 10-229 (301)
157 3qi7_A Putative transcriptiona 96.8 0.044 1.5E-06 58.7 17.8 216 47-269 10-252 (371)
158 4ddd_A Immunogenic protein; ss 96.7 0.0029 1E-07 68.1 8.5 62 700-763 136-203 (327)
159 3h5t_A Transcriptional regulat 96.7 0.014 4.7E-07 64.0 13.9 207 47-272 66-298 (366)
160 3ixl_A Amdase, arylmalonate de 96.6 0.037 1.3E-06 56.2 15.1 128 105-260 57-199 (240)
161 2x7q_A Ca3427, possible thiami 96.5 0.0093 3.2E-07 64.0 11.1 108 700-812 110-236 (321)
162 2k1e_A Water soluble analogue 96.5 0.0016 5.6E-08 56.5 4.1 78 616-697 18-97 (103)
163 2ih3_C Voltage-gated potassium 96.1 0.0076 2.6E-07 54.0 5.9 76 618-697 41-118 (122)
164 2g29_A Nitrate transport prote 96.0 0.027 9.1E-07 62.9 11.2 103 706-811 151-272 (417)
165 3eff_K Voltage-gated potassium 95.8 0.015 5E-07 53.6 6.7 73 619-695 21-95 (139)
166 1zbm_A Hypothetical protein AF 95.8 0.049 1.7E-06 56.9 11.7 99 706-812 99-210 (280)
167 2a9h_A Voltage-gated potassium 95.7 0.014 5E-07 54.5 6.0 77 618-698 64-142 (155)
168 3jv9_A OXYR, transcriptional r 95.0 0.29 9.8E-06 48.1 13.8 193 485-810 4-207 (219)
169 3ho7_A OXYR; beta-alpha-barrel 94.7 0.24 8.3E-06 49.3 12.6 84 484-593 10-93 (232)
170 4ab5_A Transcriptional regulat 94.7 0.32 1.1E-05 47.9 13.3 196 484-810 7-206 (222)
171 4h33_A LMO2059 protein; bilaye 94.7 0.048 1.7E-06 49.8 6.3 57 641-697 42-100 (137)
172 2xed_A Putative maleate isomer 94.1 0.56 1.9E-05 48.4 13.8 120 106-253 82-220 (273)
173 3oxn_A Putative transcriptiona 94.0 1.1 3.7E-05 44.9 15.7 193 484-809 18-215 (241)
174 1us5_A Putative GLUR0 ligand b 93.8 0.17 5.9E-06 53.6 9.4 61 701-763 122-188 (314)
175 3ldc_A Calcium-gated potassium 93.6 0.12 4.1E-06 42.3 5.9 52 642-693 28-81 (82)
176 4gx0_A TRKA domain protein; me 93.4 0.21 7.2E-06 58.0 9.9 124 642-769 51-185 (565)
177 3ouf_A Potassium channel prote 93.2 0.079 2.7E-06 45.1 4.3 58 642-699 32-91 (97)
178 1atg_A MODA, periplasmic molyb 92.8 0.46 1.6E-05 47.2 10.4 71 514-593 14-90 (231)
179 3r26_A Molybdate-binding perip 92.7 1.2 4E-05 44.9 13.4 114 701-822 106-232 (237)
180 3pjs_K KCSA, voltage-gated pot 92.4 0.0096 3.3E-07 56.7 -2.8 60 638-697 63-124 (166)
181 2fyi_A HTH-type transcriptiona 92.3 3.8 0.00013 40.4 16.5 196 484-811 13-214 (228)
182 3gzg_A Molybdate-binding perip 92.2 0.99 3.4E-05 46.0 12.0 115 701-822 119-248 (253)
183 2zzv_A ABC transporter, solute 92.2 0.67 2.3E-05 50.2 11.3 59 700-766 164-222 (361)
184 2hxr_A HTH-type transcriptiona 92.2 4.2 0.00014 40.2 16.8 83 485-593 30-112 (238)
185 3fzv_A Probable transcriptiona 92.1 2.5 8.5E-05 44.0 15.6 194 484-809 94-294 (306)
186 2esn_A Probable transcriptiona 92.1 2.4 8E-05 44.3 15.3 87 484-593 100-186 (310)
187 2i49_A Bicarbonate transporter 92.0 0.35 1.2E-05 53.8 8.9 106 705-811 153-280 (429)
188 1lnq_A MTHK channels, potassiu 91.8 0.12 4E-06 55.7 4.5 124 642-770 45-171 (336)
189 2q67_A Potassium channel prote 91.7 0.21 7.2E-06 43.9 5.3 55 642-696 49-105 (114)
190 1p7b_A Integral membrane chann 91.7 0.21 7.1E-06 52.9 6.2 59 639-697 93-153 (333)
191 1xl4_A Inward rectifier potass 91.1 0.28 9.7E-06 51.2 6.5 61 637-697 77-139 (301)
192 3vou_A ION transport 2 domain 91.1 0.33 1.1E-05 44.9 6.3 54 642-695 52-107 (148)
193 2y7p_A LYSR-type regulatory pr 90.9 3.6 0.00012 40.4 14.4 84 484-593 7-90 (218)
194 1sw5_A Osmoprotection protein 90.9 0.73 2.5E-05 47.7 9.4 105 701-810 124-238 (275)
195 4esw_A Pyrimidine biosynthesis 90.8 0.7 2.4E-05 49.6 9.6 67 700-769 101-170 (342)
196 2ql3_A Probable transcriptiona 90.7 4.8 0.00017 38.7 15.0 84 484-593 4-87 (209)
197 3fxq_A LYSR type regulator of 90.6 2.7 9.3E-05 43.8 13.9 85 485-593 92-176 (305)
198 1orq_C Potassium channel; volt 90.4 0.3 1E-05 48.9 5.7 73 619-695 146-220 (223)
199 1al3_A Cys regulon transcripti 90.3 7.7 0.00027 40.7 17.4 205 485-823 93-304 (324)
200 2pfz_A Putative exported prote 90.3 1.8 6.1E-05 45.4 12.0 56 700-763 128-183 (301)
201 2dgd_A 223AA long hypothetical 90.2 1.7 5.9E-05 43.2 11.3 81 170-253 96-183 (223)
202 2pfy_A Putative exported prote 90.2 1.7 5.9E-05 45.5 11.8 87 700-795 129-216 (301)
203 1ixc_A CBNR, LYSR-type regulat 90.1 3.5 0.00012 42.5 14.1 84 484-593 90-173 (294)
204 2hzl_A Trap-T family sorbitol/ 89.1 1.3 4.3E-05 48.1 9.9 87 700-795 163-252 (365)
205 3s99_A Basic membrane lipoprot 88.6 4.2 0.00014 43.6 13.4 89 50-147 150-238 (356)
206 1i6a_A OXYR, hydrogen peroxide 88.2 0.78 2.7E-05 45.2 6.9 84 484-593 4-87 (219)
207 2fqx_A Membrane lipoprotein TM 87.6 8.6 0.00029 40.4 15.1 126 51-183 131-264 (318)
208 3bfj_A 1,3-propanediol oxidore 86.3 3.9 0.00013 44.6 11.7 88 172-261 23-114 (387)
209 2qks_A KIR3.1-prokaryotic KIR 86.3 0.97 3.3E-05 47.6 6.5 56 642-697 78-135 (321)
210 1uth_A LYSR-type regulatory pr 86.2 7.2 0.00025 40.7 13.6 83 485-593 105-187 (315)
211 3ox4_A Alcohol dehydrogenase 2 86.2 3.2 0.00011 45.1 10.9 90 171-262 20-111 (383)
212 2eq5_A 228AA long hypothetical 85.6 6.3 0.00022 39.1 12.0 115 107-253 68-186 (228)
213 3beh_A MLL3241 protein; transm 85.5 0.48 1.6E-05 51.2 3.8 74 618-695 141-216 (355)
214 1twy_A ABC transporter, peripl 84.8 25 0.00085 35.6 16.8 71 514-593 42-113 (290)
215 2h9b_A HTH-type transcriptiona 83.5 33 0.0011 35.4 17.3 82 486-593 91-172 (312)
216 2hqb_A Transcriptional activat 83.2 13 0.00043 38.6 13.6 120 51-184 128-248 (296)
217 1jfl_A Aspartate racemase; alp 82.6 10 0.00035 37.6 12.1 81 105-214 65-145 (228)
218 3l6g_A Betaine ABC transporter 81.8 5.7 0.0002 40.3 9.9 98 693-795 88-199 (256)
219 2r9r_B Paddle chimera voltage 81.7 1.1 3.8E-05 50.8 4.9 72 620-695 357-430 (514)
220 2h98_A HTH-type transcriptiona 81.5 47 0.0016 34.3 17.5 82 486-593 91-172 (313)
221 3k6v_A Solute-binding protein 81.4 31 0.001 36.7 15.8 69 516-593 59-133 (354)
222 1rrm_A Lactaldehyde reductase; 80.8 6.1 0.00021 42.9 10.4 89 172-262 21-111 (386)
223 2zsk_A PH1733, 226AA long hypo 80.6 7.6 0.00026 38.5 10.2 79 107-214 66-144 (226)
224 3hhf_B Transcriptional regulat 80.1 2.5 8.7E-05 40.8 6.5 81 484-593 6-86 (213)
225 3kos_A HTH-type transcriptiona 78.9 19 0.00066 34.6 12.7 106 702-809 95-203 (219)
226 1xs5_A 29 kDa protein, membran 78.2 31 0.0011 34.4 13.9 36 518-561 21-56 (241)
227 1nh8_A ATP phosphoribosyltrans 78.1 7.8 0.00027 39.8 9.2 102 701-810 120-224 (304)
228 3onm_A Transcriptional regulat 78.1 52 0.0018 32.0 15.8 82 484-593 26-107 (238)
229 3cij_A UPF0100 protein AF_0094 77.9 54 0.0019 33.5 16.4 70 515-593 20-95 (295)
230 2hpg_A ABC transporter, peripl 77.7 1.6 5.6E-05 46.3 4.3 88 700-795 148-236 (327)
231 1vlj_A NADH-dependent butanol 77.0 6.8 0.00023 42.9 9.3 88 172-261 33-123 (407)
232 3ukm_A Potassium channel subfa 76.5 1.7 6E-05 44.4 3.9 66 642-707 201-275 (280)
233 3cfx_A UPF0100 protein MA_0280 75.7 44 0.0015 34.3 14.9 70 515-593 20-95 (296)
234 1o2d_A Alcohol dehydrogenase, 75.0 11 0.00039 40.5 10.3 88 171-261 30-120 (371)
235 2l82_A Designed protein OR32; 74.9 24 0.00083 29.2 9.4 97 159-266 4-104 (162)
236 4edp_A ABC transporter, substr 74.7 36 0.0012 35.6 14.4 83 740-822 215-299 (351)
237 2de3_A Dibenzothiophene desulf 74.6 11 0.00036 40.7 9.9 120 700-824 109-299 (365)
238 2gzm_A Glutamate racemase; enz 74.4 20 0.00069 36.4 11.5 118 105-251 56-186 (267)
239 1mkz_A Molybdenum cofactor bio 72.9 14 0.00047 34.8 9.0 64 183-250 11-78 (172)
240 3cfz_A UPF0100 protein MJ1186; 72.9 37 0.0013 34.8 13.4 71 514-593 19-95 (292)
241 2dwu_A Glutamate racemase; iso 72.8 23 0.00077 36.3 11.4 119 104-251 59-190 (276)
242 2rin_A Putative glycine betain 72.8 8.4 0.00029 40.1 8.2 66 701-767 104-183 (298)
243 3uhj_A Probable glycerol dehyd 72.6 5.1 0.00017 43.5 6.7 82 172-259 43-126 (387)
244 2q5c_A NTRC family transcripti 71.3 49 0.0017 31.7 12.7 158 50-267 5-162 (196)
245 2oho_A Glutamate racemase; iso 71.2 13 0.00045 38.0 9.2 82 106-215 66-150 (273)
246 3tmg_A Glycine betaine, L-prol 71.0 22 0.00074 36.5 10.8 97 693-795 102-216 (280)
247 1r9l_A Glycine betaine-binding 70.6 15 0.0005 38.5 9.6 67 701-768 107-194 (309)
248 1h3d_A ATP-phosphoribosyltrans 70.1 23 0.0008 36.3 10.5 101 701-810 115-218 (299)
249 3m9w_A D-xylose-binding peripl 69.3 15 0.00053 38.1 9.6 79 183-266 3-84 (313)
250 3muq_A Uncharacterized conserv 68.7 48 0.0016 32.9 12.3 74 511-593 18-94 (237)
251 2czl_A Hypothetical protein TT 67.7 12 0.00041 38.0 8.1 59 705-767 91-150 (272)
252 3hn0_A Nitrate transport prote 67.1 13 0.00045 38.2 8.3 62 711-773 95-161 (283)
253 3g1w_A Sugar ABC transporter; 66.5 13 0.00044 38.5 8.2 80 183-266 5-87 (305)
254 2hxw_A Major antigenic peptide 65.6 25 0.00086 34.6 9.9 69 515-593 16-91 (237)
255 2xxp_A CPS2A; replication, pep 65.3 8.5 0.00029 41.8 6.4 66 700-770 26-97 (398)
256 3cvg_A Putative metal binding 65.1 67 0.0023 32.9 13.3 73 512-593 33-115 (294)
257 4dik_A Flavoprotein; TM0755, e 65.1 26 0.00088 38.2 10.3 144 118-281 213-365 (410)
258 1zuw_A Glutamate racemase 1; ( 65.0 46 0.0016 33.8 11.7 120 103-251 54-187 (272)
259 3ist_A Glutamate racemase; str 64.3 24 0.00081 35.9 9.3 147 84-258 28-196 (269)
260 3ce9_A Glycerol dehydrogenase; 63.8 14 0.00049 39.4 7.9 97 173-279 25-123 (354)
261 2jfq_A Glutamate racemase; cel 62.7 39 0.0013 34.7 10.7 120 104-251 74-206 (286)
262 1jq5_A Glycerol dehydrogenase; 62.3 15 0.0005 39.6 7.7 95 173-277 23-119 (370)
263 2jfn_A Glutamate racemase; cel 61.9 36 0.0012 35.0 10.3 39 105-143 74-113 (285)
264 3ojc_A Putative aspartate/glut 60.3 8.2 0.00028 38.4 4.8 81 105-214 67-148 (231)
265 1y5e_A Molybdenum cofactor bio 60.2 33 0.0011 32.0 8.8 67 180-250 11-81 (169)
266 2pjk_A 178AA long hypothetical 60.2 30 0.001 32.6 8.5 67 180-250 13-90 (178)
267 3h75_A Periplasmic sugar-bindi 60.0 22 0.00075 37.6 8.7 81 181-266 2-87 (350)
268 3l49_A ABC sugar (ribose) tran 60.0 27 0.00091 35.6 9.1 79 183-266 6-87 (291)
269 3rfq_A Pterin-4-alpha-carbinol 59.5 24 0.00083 33.5 7.7 65 182-250 30-98 (185)
270 1b73_A Glutamate racemase; iso 58.9 23 0.00079 35.7 8.1 119 103-251 51-180 (254)
271 3hl0_A Maleylacetate reductase 58.8 13 0.00045 39.6 6.5 97 171-278 23-121 (353)
272 2is8_A Molybdopterin biosynthe 58.1 28 0.00096 32.3 7.9 63 184-250 3-71 (164)
273 2l69_A Rossmann 2X3 fold prote 57.7 60 0.002 26.0 8.2 66 162-238 56-121 (134)
274 3um7_A Potassium channel subfa 57.5 6.1 0.00021 41.0 3.4 53 641-693 114-168 (309)
275 3gbv_A Putative LACI-family tr 57.5 29 0.00099 35.5 8.9 84 181-266 7-95 (304)
276 8abp_A L-arabinose-binding pro 57.5 34 0.0012 35.1 9.5 78 183-266 3-83 (306)
277 3um7_A Potassium channel subfa 57.2 8.6 0.0003 39.9 4.4 53 642-694 224-284 (309)
278 2vvt_A Glutamate racemase; iso 57.1 33 0.0011 35.3 9.0 119 104-251 76-207 (290)
279 1p99_A Hypothetical protein PG 56.6 38 0.0013 34.9 9.4 36 518-561 56-91 (295)
280 3jy6_A Transcriptional regulat 56.5 34 0.0012 34.6 9.1 78 182-266 7-86 (276)
281 3r6u_A Choline-binding protein 55.9 53 0.0018 33.6 10.3 90 701-795 130-230 (284)
282 3d02_A Putative LACI-type tran 55.9 27 0.00092 35.9 8.3 80 183-266 5-87 (303)
283 1tjy_A Sugar transport protein 55.7 17 0.0006 37.8 6.8 80 183-266 4-86 (316)
284 2vd3_A ATP phosphoribosyltrans 55.6 19 0.00066 36.7 6.6 102 701-810 105-208 (289)
285 3uug_A Multiple sugar-binding 54.9 31 0.0011 36.0 8.7 79 183-266 4-85 (330)
286 3jzd_A Iron-containing alcohol 54.6 15 0.00052 39.2 6.0 97 171-278 25-123 (358)
287 3s81_A Putative aspartate race 54.4 57 0.0019 33.0 10.1 39 104-143 89-127 (268)
288 3tb6_A Arabinose metabolism tr 52.8 37 0.0013 34.6 8.8 79 183-266 16-100 (298)
289 3o74_A Fructose transport syst 52.1 22 0.00074 35.8 6.7 79 183-266 3-83 (272)
290 3iwt_A 178AA long hypothetical 52.0 37 0.0013 31.9 7.8 63 184-250 17-90 (178)
291 3sya_A G protein-activated inw 51.9 17 0.00059 38.2 5.7 59 641-699 90-152 (340)
292 3l6u_A ABC-type sugar transpor 51.7 30 0.001 35.3 7.8 81 181-266 7-90 (293)
293 1oj7_A Hypothetical oxidoreduc 51.6 42 0.0014 36.5 9.2 83 173-261 43-128 (408)
294 3rot_A ABC sugar transporter, 51.3 25 0.00086 36.1 7.1 81 183-266 4-87 (297)
295 1ccw_A Protein (glutamate muta 51.0 75 0.0026 28.3 9.3 85 184-277 5-93 (137)
296 3uhf_A Glutamate racemase; str 50.8 1E+02 0.0035 31.3 11.2 103 84-215 47-162 (274)
297 3k9c_A Transcriptional regulat 50.8 1.2E+02 0.004 30.7 12.2 117 51-178 128-252 (289)
298 3lr1_A Tungstate ABC transport 50.7 9.9 0.00034 37.9 3.5 75 511-594 18-95 (236)
299 3dbi_A Sugar-binding transcrip 50.6 52 0.0018 34.4 9.6 85 177-266 56-144 (338)
300 3p6l_A Sugar phosphate isomera 50.5 68 0.0023 32.0 10.2 93 171-266 25-129 (262)
301 2fn9_A Ribose ABC transporter, 50.3 42 0.0014 34.1 8.6 79 183-266 3-84 (290)
302 3o66_A Glycine betaine/carniti 50.2 55 0.0019 33.4 9.3 90 701-795 129-229 (282)
303 2g2c_A Putative molybdenum cof 49.9 28 0.00097 32.4 6.4 63 184-250 7-78 (167)
304 3qvl_A Putative hydantoin race 49.8 2E+02 0.0069 28.4 14.7 170 50-259 2-193 (245)
305 4euo_A ABC transporter, substr 49.6 2.3E+02 0.0078 28.9 16.6 84 737-820 175-258 (320)
306 1ta9_A Glycerol dehydrogenase; 48.5 30 0.001 38.2 7.3 97 172-278 81-179 (450)
307 3fd3_A Chromosome replication 48.4 1.6E+02 0.0054 27.3 12.1 68 512-592 15-82 (208)
308 4ef1_A Pheromone COB1/lipoprot 48.1 2E+02 0.0069 28.5 12.5 64 700-766 91-180 (246)
309 2yxb_A Coenzyme B12-dependent 47.8 1.1E+02 0.0037 28.2 10.0 86 183-277 19-108 (161)
310 3brq_A HTH-type transcriptiona 47.1 68 0.0023 32.5 9.7 84 177-266 14-102 (296)
311 3tsm_A IGPS, indole-3-glycerol 46.8 1E+02 0.0035 31.2 10.4 87 171-267 82-171 (272)
312 3ksm_A ABC-type sugar transpor 46.5 32 0.0011 34.6 6.9 80 184-266 2-85 (276)
313 3cg1_A UPF0100 protein PF0080; 46.5 2.4E+02 0.0083 28.4 13.9 69 516-593 21-100 (296)
314 1i4n_A Indole-3-glycerol phosp 46.4 65 0.0022 32.2 8.7 86 171-267 64-152 (251)
315 3kke_A LACI family transcripti 46.1 38 0.0013 34.8 7.5 85 176-266 9-95 (303)
316 1jx6_A LUXP protein; protein-l 46.0 46 0.0016 34.8 8.3 82 183-266 44-129 (342)
317 2qmw_A PDT, prephenate dehydra 46.0 57 0.0019 33.0 8.3 84 712-797 3-97 (267)
318 3szp_A Transcriptional regulat 45.9 11 0.00038 38.4 3.2 72 737-810 213-286 (291)
319 3kbq_A Protein TA0487; structu 45.5 47 0.0016 31.1 7.1 62 183-249 4-70 (172)
320 2pju_A Propionate catabolism o 45.1 1.2E+02 0.0041 29.7 10.3 135 89-267 39-174 (225)
321 2fep_A Catabolite control prot 44.7 59 0.002 33.0 8.7 78 183-266 17-96 (289)
322 3isp_A HTH-type transcriptiona 44.5 82 0.0028 32.0 9.9 47 543-593 127-173 (303)
323 2h3h_A Sugar ABC transporter, 44.3 47 0.0016 34.3 7.9 79 184-266 3-83 (313)
324 3k4h_A Putative transcriptiona 44.3 43 0.0015 34.0 7.6 80 181-266 7-93 (292)
325 2fvy_A D-galactose-binding per 44.1 65 0.0022 32.9 9.0 79 183-266 3-85 (309)
326 3huu_A Transcription regulator 44.0 35 0.0012 35.1 6.9 86 175-266 15-107 (305)
327 3i42_A Response regulator rece 43.9 96 0.0033 26.3 8.9 57 197-264 14-72 (127)
328 3sds_A Ornithine carbamoyltran 43.7 3.1E+02 0.011 28.8 15.0 132 50-217 67-219 (353)
329 3l4e_A Uncharacterized peptida 43.6 47 0.0016 32.1 7.1 97 171-278 16-121 (206)
330 3mwb_A Prephenate dehydratase; 43.1 47 0.0016 34.5 7.3 85 712-797 6-101 (313)
331 3lmz_A Putative sugar isomeras 43.0 1E+02 0.0035 30.6 10.1 94 170-266 32-127 (257)
332 3okf_A 3-dehydroquinate syntha 42.9 69 0.0023 34.4 8.9 97 176-277 56-158 (390)
333 2jfz_A Glutamate racemase; cel 42.8 1.3E+02 0.0044 30.1 10.6 38 106-143 54-91 (255)
334 2klu_A T-cell surface glycopro 41.9 65 0.0022 24.3 5.7 16 853-868 13-28 (70)
335 3lte_A Response regulator; str 41.9 1.1E+02 0.0038 26.0 9.1 58 197-265 17-76 (132)
336 2qsx_A Putative transcriptiona 41.8 1.3E+02 0.0044 28.6 10.4 70 739-810 140-211 (218)
337 2ioy_A Periplasmic sugar-bindi 41.6 65 0.0022 32.5 8.4 79 183-266 2-83 (283)
338 1jlj_A Gephyrin; globular alph 41.5 70 0.0024 30.4 7.8 68 179-250 11-87 (189)
339 3fni_A Putative diflavin flavo 41.2 1.5E+02 0.005 27.0 9.9 86 183-278 5-97 (159)
340 2iks_A DNA-binding transcripti 39.7 38 0.0013 34.5 6.3 85 177-266 15-101 (293)
341 2dri_A D-ribose-binding protei 39.6 77 0.0026 31.7 8.5 79 183-266 2-83 (271)
342 2qmx_A Prephenate dehydratase; 39.5 83 0.0028 32.0 8.4 79 712-797 6-95 (283)
343 3gyb_A Transcriptional regulat 39.4 57 0.0019 32.8 7.5 116 51-178 120-243 (280)
344 1jye_A Lactose operon represso 39.1 78 0.0027 33.2 8.8 65 181-249 60-126 (349)
345 3spc_A Inward-rectifier K+ cha 38.9 40 0.0014 35.5 6.0 59 641-699 93-155 (343)
346 3hs3_A Ribose operon repressor 38.6 65 0.0022 32.4 7.8 68 177-249 5-75 (277)
347 3gl9_A Response regulator; bet 37.7 1.8E+02 0.0062 24.4 10.4 58 197-265 13-72 (122)
348 2vpn_A Periplasmic substrate b 37.6 29 0.00099 36.3 4.9 88 700-795 130-218 (316)
349 1y80_A Predicted cobalamin bin 37.6 1.4E+02 0.0047 28.8 9.5 87 183-277 89-179 (210)
350 3lua_A Response regulator rece 37.4 1.8E+02 0.0063 24.9 9.9 56 197-263 15-75 (140)
351 3ukm_A Potassium channel subfa 37.3 18 0.0006 37.0 2.9 54 641-694 92-147 (280)
352 2rjo_A Twin-arginine transloca 37.1 67 0.0023 33.4 7.8 79 183-266 6-89 (332)
353 3t6k_A Response regulator rece 37.0 2E+02 0.0067 24.8 9.9 58 197-265 15-74 (136)
354 1sg6_A Pentafunctional AROM po 36.9 1.5E+02 0.0052 31.8 10.7 96 177-277 31-140 (393)
355 3kjx_A Transcriptional regulat 36.7 95 0.0032 32.4 9.0 78 183-266 69-148 (344)
356 3h5o_A Transcriptional regulat 36.5 86 0.003 32.6 8.6 81 180-266 60-142 (339)
357 3out_A Glutamate racemase; str 36.3 64 0.0022 32.7 7.0 58 85-143 31-99 (268)
358 4a29_A Engineered retro-aldol 36.2 1.1E+02 0.0038 30.5 8.3 85 173-268 69-156 (258)
359 1uuy_A CNX1, molybdopterin bio 36.0 49 0.0017 30.7 5.7 64 183-250 6-80 (167)
360 3dmy_A Protein FDRA; predicted 35.7 4.8E+02 0.016 28.7 14.8 145 99-265 45-198 (480)
361 3d8u_A PURR transcriptional re 35.3 72 0.0025 31.9 7.5 78 183-266 4-83 (275)
362 3dnf_A ISPH, LYTB, 4-hydroxy-3 35.1 64 0.0022 33.0 6.6 52 91-142 186-239 (297)
363 2rgy_A Transcriptional regulat 35.0 68 0.0023 32.5 7.2 79 182-266 8-91 (290)
364 3e3m_A Transcriptional regulat 34.8 1.1E+02 0.0039 32.0 9.2 81 180-266 68-150 (355)
365 2xwv_A Sialic acid-binding per 34.6 55 0.0019 34.0 6.4 60 700-766 133-192 (312)
366 3grc_A Sensor protein, kinase; 34.6 1E+02 0.0035 26.7 7.6 57 197-264 17-75 (140)
367 3kht_A Response regulator; PSI 34.5 2.2E+02 0.0077 24.5 10.7 72 197-277 16-89 (144)
368 3ezx_A MMCP 1, monomethylamine 34.3 1.8E+02 0.0063 28.0 9.8 87 183-277 93-185 (215)
369 3egc_A Putative ribose operon 34.2 38 0.0013 34.5 5.1 80 181-266 7-88 (291)
370 2nr1_A NR1 M2, M2; receptor, s 33.9 10 0.00034 22.9 0.3 19 640-658 6-24 (27)
371 3apt_A Methylenetetrahydrofola 33.8 4.1E+02 0.014 27.3 12.8 164 88-269 14-203 (310)
372 2pbq_A Molybdenum cofactor bio 33.6 1E+02 0.0035 28.8 7.6 63 183-250 6-77 (178)
373 4a8t_A Putrescine carbamoyltra 33.6 4.3E+02 0.015 27.5 16.2 132 50-217 64-206 (339)
374 3qk7_A Transcriptional regulat 33.4 75 0.0026 32.3 7.3 78 182-266 6-89 (294)
375 2x7x_A Sensor protein; transfe 33.3 1.3E+02 0.0044 31.0 9.3 80 182-266 6-88 (325)
376 3brs_A Periplasmic binding pro 33.2 3.7E+02 0.013 26.6 13.2 119 50-178 132-258 (289)
377 3e61_A Putative transcriptiona 33.0 81 0.0028 31.5 7.4 77 182-266 8-87 (277)
378 2pln_A HP1043, response regula 33.0 1.4E+02 0.0049 25.6 8.3 55 197-264 29-83 (137)
379 3gt7_A Sensor protein; structu 33.0 2.5E+02 0.0087 24.6 11.8 58 197-265 18-77 (154)
380 2vk2_A YTFQ, ABC transporter p 32.8 78 0.0027 32.3 7.4 79 183-266 3-84 (306)
381 3cg4_A Response regulator rece 32.6 2.4E+02 0.0081 24.2 12.6 56 197-263 18-75 (142)
382 1di6_A MOGA, molybdenum cofact 32.0 1E+02 0.0034 29.5 7.2 64 183-250 4-75 (195)
383 3to5_A CHEY homolog; alpha(5)b 31.7 2.2E+02 0.0077 24.9 9.2 59 197-265 23-83 (134)
384 3kto_A Response regulator rece 31.7 2.4E+02 0.0083 24.0 9.7 58 197-265 17-78 (136)
385 4a8p_A Putrescine carbamoyltra 31.6 4.7E+02 0.016 27.4 16.1 132 50-217 42-184 (355)
386 3heb_A Response regulator rece 31.6 2.6E+02 0.0089 24.4 11.3 70 197-277 15-97 (152)
387 3qja_A IGPS, indole-3-glycerol 31.5 1.2E+02 0.004 30.7 8.1 87 171-267 75-164 (272)
388 1dbq_A Purine repressor; trans 31.2 1.4E+02 0.0047 30.0 8.9 64 183-251 8-73 (289)
389 3gv0_A Transcriptional regulat 31.1 83 0.0028 31.8 7.1 80 181-266 7-90 (288)
390 3mz1_A Putative transcriptiona 31.1 47 0.0016 33.6 5.2 72 737-810 215-288 (300)
391 3c3k_A Alanine racemase; struc 31.0 1.5E+02 0.0052 29.7 9.2 78 182-266 8-87 (285)
392 3pzy_A MOG; ssgcid, seattle st 30.9 86 0.0029 29.0 6.4 63 183-250 8-75 (164)
393 1gud_A ALBP, D-allose-binding 30.6 1E+02 0.0035 31.1 7.7 81 183-266 2-85 (288)
394 3hdv_A Response regulator; PSI 30.5 2.5E+02 0.0086 23.8 10.2 58 197-265 18-78 (136)
395 2o20_A Catabolite control prot 30.4 1.3E+02 0.0046 31.0 8.8 80 181-266 62-143 (332)
396 3rf7_A Iron-containing alcohol 30.4 84 0.0029 33.6 7.1 84 172-261 40-131 (375)
397 4ep1_A Otcase, ornithine carba 30.3 4.9E+02 0.017 27.1 14.7 132 50-217 71-210 (340)
398 3clk_A Transcription regulator 30.0 51 0.0017 33.5 5.2 80 182-266 8-89 (290)
399 3hcw_A Maltose operon transcri 29.8 3.8E+02 0.013 26.7 12.2 115 51-178 133-259 (295)
400 3bil_A Probable LACI-family tr 29.8 93 0.0032 32.6 7.5 78 183-266 67-146 (348)
401 2qip_A Protein of unknown func 29.8 2.5E+02 0.0086 25.6 9.5 95 171-266 36-134 (165)
402 3iv7_A Alcohol dehydrogenase I 29.6 36 0.0012 36.4 4.0 95 171-278 26-122 (364)
403 2qxy_A Response regulator; reg 29.5 2.2E+02 0.0075 24.5 9.0 58 197-265 15-73 (142)
404 2b4l_A Glycine betaine-binding 29.0 80 0.0027 31.9 6.3 58 483-563 163-220 (268)
405 3rvy_A ION transport protein; 28.8 30 0.001 35.4 3.2 58 640-697 178-243 (285)
406 2zay_A Response regulator rece 28.6 2.8E+02 0.0097 23.8 10.4 56 197-263 19-76 (147)
407 2j48_A Two-component sensor ki 28.4 1.9E+02 0.0066 23.5 8.1 58 197-265 12-71 (119)
408 3rhg_A Putative phophotriester 28.4 5.4E+02 0.019 27.0 13.6 160 98-278 72-254 (365)
409 3c3m_A Response regulator rece 28.3 2.4E+02 0.0082 24.1 9.0 58 197-265 14-73 (138)
410 2hsg_A Glucose-resistance amyl 28.1 1E+02 0.0035 31.9 7.4 79 182-266 60-140 (332)
411 3miz_A Putative transcriptiona 27.4 1.8E+02 0.0061 29.4 9.0 84 175-265 6-92 (301)
412 3jvd_A Transcriptional regulat 27.4 5.1E+02 0.018 26.4 13.2 116 50-178 175-298 (333)
413 4ecf_A ABC-type phosphate tran 27.3 86 0.0029 31.5 6.3 71 513-593 17-91 (264)
414 3o1i_D Periplasmic protein TOR 27.1 66 0.0023 32.7 5.5 80 183-266 6-88 (304)
415 3qbe_A 3-dehydroquinate syntha 27.0 2.1E+02 0.0073 30.3 9.4 110 157-277 23-138 (368)
416 1xah_A Sadhqs, 3-dehydroquinat 26.5 96 0.0033 32.8 6.7 97 173-278 24-126 (354)
417 1xrs_B D-lysine 5,6-aminomutas 25.8 3.3E+02 0.011 27.2 10.0 86 184-277 122-223 (262)
418 2bon_A Lipid kinase; DAG kinas 25.8 1.7E+02 0.0058 30.5 8.5 75 183-264 30-105 (332)
419 3kn3_A Putative periplasmic pr 25.7 30 0.001 34.5 2.3 74 511-593 18-94 (242)
420 3hhg_A Transcriptional regulat 25.7 41 0.0014 34.3 3.6 81 484-593 92-172 (306)
421 3bbl_A Regulatory protein of L 25.6 91 0.0031 31.4 6.2 78 183-266 5-88 (287)
422 3eod_A Protein HNR; response r 25.5 2.2E+02 0.0074 24.0 8.0 68 183-265 8-77 (130)
423 3hv2_A Response regulator/HD d 25.4 2.1E+02 0.0071 25.2 8.1 58 197-265 25-84 (153)
424 2rjn_A Response regulator rece 25.3 2.6E+02 0.0087 24.5 8.7 58 197-265 18-77 (154)
425 2i2x_B MTAC, methyltransferase 24.9 4.3E+02 0.015 26.2 10.9 84 183-277 124-212 (258)
426 3nhm_A Response regulator; pro 24.5 2.4E+02 0.0082 23.8 8.2 69 197-277 15-85 (133)
427 4es6_A Uroporphyrinogen-III sy 24.3 47 0.0016 33.2 3.6 86 169-263 115-206 (254)
428 3fst_A 5,10-methylenetetrahydr 24.2 5.9E+02 0.02 26.0 13.6 164 87-269 23-206 (304)
429 2qr3_A Two-component system re 24.1 3.3E+02 0.011 23.1 10.9 58 197-265 14-78 (140)
430 1vc4_A Indole-3-glycerol phosp 24.0 2.5E+02 0.0085 28.0 8.8 87 171-267 68-156 (254)
431 3tpf_A Otcase, ornithine carba 24.0 5.9E+02 0.02 26.0 16.0 132 50-217 37-177 (307)
432 3umf_A Adenylate kinase; rossm 23.9 29 0.001 33.9 1.8 31 114-144 30-60 (217)
433 3sr0_A Adenylate kinase; phosp 23.8 38 0.0013 32.8 2.6 30 115-144 2-31 (206)
434 2qv7_A Diacylglycerol kinase D 23.7 2.7E+02 0.0091 29.0 9.6 75 182-263 24-102 (337)
435 4f2g_A Otcase 1, ornithine car 23.5 6.1E+02 0.021 26.0 12.1 132 50-217 46-185 (309)
436 3cnb_A DNA-binding response re 23.5 3.4E+02 0.012 23.0 11.3 58 197-264 19-79 (143)
437 2rdm_A Response regulator rece 23.5 3.3E+02 0.011 22.8 9.0 58 197-265 16-77 (132)
438 4i1d_A ABC transporter substra 23.5 5.8E+02 0.02 25.7 13.5 72 741-812 184-255 (324)
439 4amu_A Ornithine carbamoyltran 23.4 6.6E+02 0.023 26.4 12.2 132 50-216 72-211 (365)
440 3hp4_A GDSL-esterase; psychrot 23.0 2.5E+02 0.0087 25.5 8.5 69 183-254 3-79 (185)
441 1mb3_A Cell division response 22.6 2.8E+02 0.0094 22.9 8.1 57 197-264 12-70 (124)
442 3gd5_A Otcase, ornithine carba 22.6 6.5E+02 0.022 25.9 15.5 132 50-217 49-188 (323)
443 3fxb_A Trap dicarboxylate tran 22.4 76 0.0026 33.2 4.8 101 700-808 144-247 (326)
444 3hzh_A Chemotaxis response reg 22.4 4E+02 0.014 23.4 9.9 59 197-265 47-109 (157)
445 2gkg_A Response regulator homo 22.3 3.3E+02 0.011 22.4 10.5 57 197-264 16-75 (127)
446 3hdg_A Uncharacterized protein 22.3 3.1E+02 0.011 23.2 8.5 58 197-265 18-77 (137)
447 1byk_A Protein (trehalose oper 22.2 1.7E+02 0.0059 28.5 7.5 63 183-250 3-67 (255)
448 3hly_A Flavodoxin-like domain; 21.9 1.6E+02 0.0056 26.7 6.6 86 184-279 2-93 (161)
449 5nul_A Flavodoxin; electron tr 21.9 2.1E+02 0.0071 24.9 7.2 82 185-280 1-91 (138)
450 3cs3_A Sugar-binding transcrip 21.8 4.4E+02 0.015 25.9 10.6 114 51-177 120-243 (277)
451 1dxh_A Ornithine carbamoyltran 21.7 6.9E+02 0.024 25.9 14.6 133 50-217 46-187 (335)
452 3lft_A Uncharacterized protein 21.5 1.2E+02 0.0039 30.9 6.1 65 183-250 3-71 (295)
453 2jwa_A Receptor tyrosine-prote 21.5 1.7E+02 0.006 20.2 4.7 22 853-874 18-39 (44)
454 2lpm_A Two-component response 21.4 61 0.0021 28.3 3.3 67 187-266 12-80 (123)
455 3f2i_A ALR0221 protein; alpha- 21.4 2.3E+02 0.0079 26.1 7.5 93 164-263 27-123 (172)
456 3a10_A Response regulator; pho 21.3 3.3E+02 0.011 22.1 8.3 58 197-265 12-71 (116)
457 1pii_A N-(5'phosphoribosyl)ant 21.2 1.5E+02 0.005 32.6 6.8 86 171-267 71-159 (452)
458 3lou_A Formyltetrahydrofolate 21.2 5.1E+02 0.018 26.3 10.6 97 115-217 12-129 (292)
459 4exl_A PBP 1, phosphate-bindin 21.2 1.5E+02 0.0052 29.6 6.8 70 514-593 18-91 (265)
460 3zy2_A Putative GDP-fucose pro 20.8 3.1E+02 0.01 28.6 8.6 88 163-265 261-348 (362)
461 1k68_A Phytochrome response re 20.7 3.8E+02 0.013 22.5 10.7 58 197-265 13-81 (140)
462 3rqi_A Response regulator prot 20.6 2.3E+02 0.0079 26.0 7.6 58 197-265 18-77 (184)
463 3g85_A Transcriptional regulat 20.6 2.7E+02 0.0091 27.7 8.7 120 51-178 129-257 (289)
464 1k66_A Phytochrome response re 20.5 4E+02 0.014 22.7 9.4 58 197-265 17-88 (149)
465 1qpz_A PURA, protein (purine n 20.4 2.6E+02 0.0088 28.8 8.7 67 180-251 56-124 (340)
466 3luy_A Probable chorismate mut 20.4 2.2E+02 0.0076 29.6 7.7 84 712-797 6-106 (329)
467 2qu7_A Putative transcriptiona 20.2 1.8E+02 0.006 29.2 7.1 64 183-251 9-73 (288)
468 2csu_A 457AA long hypothetical 20.1 3.3E+02 0.011 29.8 9.7 145 98-265 72-227 (457)
469 1dz3_A Stage 0 sporulation pro 20.1 3.6E+02 0.012 22.5 8.3 58 197-264 13-73 (130)
470 1duv_G Octase-1, ornithine tra 20.0 7.4E+02 0.025 25.6 15.5 133 50-217 45-187 (333)
No 1
>3kg2_A Glutamate receptor 2; ION channel, membrane protein, cell membrane, glycoprotein, transport, membrane, postsynaptic cell membrane, editing; HET: ZK1 NAG BMA; 3.60A {Rattus norvegicus}
Probab=100.00 E-value=1.9e-99 Score=944.53 Aligned_cols=762 Identities=20% Similarity=0.335 Sum_probs=638.7
Q ss_pred ceEEEeEEEecCCCchhHHHHHHHHHHHHHhcCCCCCCCcEEEEEEecCCC-ChHHHHHHHHHHHhcCcEEEEccCChhh
Q 002211 48 EVLNVGAIFSFGTVNGQVSRIAMKAAQDDINSDPRVLGGRKLSITMHDAKF-NGFLSIMGALQFMETDTLAIVGPQSAVM 126 (953)
Q Consensus 48 ~~i~IG~l~~~~~~~g~~~~~a~~lAve~iN~~g~il~g~~l~l~~~D~~~-~~~~a~~~a~~li~~~v~aiiGp~~S~~ 126 (953)
++|+||+++|++.. ..+.|+++|+||||++| ++|++++.|+++ ++..++.+++++++++|.|||||.+|.+
T Consensus 1 ~~ikIG~l~~~tg~---~~~~a~~lAveeiN~~~-----~~l~~~~~D~~~~~~~~a~~~~~~l~~~~V~aiiG~~~S~~ 72 (823)
T 3kg2_A 1 NSIQIGGLFPRGAD---QEYSAFRVGMVQFSTSE-----FRLTPHIDNLEVANSFAVTNAFCSQFSRGVYAIFGFYDKKS 72 (823)
T ss_dssp CEEEEEEEEETTCH---HHHHHHHHHHHHTCCSS-----CEEEEEEEEECTTCHHHHHHHHHHHHHTTCSEEEECCCTTT
T ss_pred CcceEEEEeCCCCh---HHHHHHHHHHHHHhcCC-----eEEEEEEEEcCCCChHHHHHHHHHHHhcCcEEEEcCCChhH
Confidence 37999999999875 78999999999999987 799999999999 9999999999999999999999999999
Q ss_pred HHHHHHhhhhCCCcEEEeecCCCCCCCCCCCcEEEccCChHHHHHHHHHHHHHcCCcEEEEEEecCccccchHHHHHHHH
Q 002211 127 AHVLSHLANELQVPLLSFTALDPTLSPLQYPFFVQTAPNDLYLMSAIAEMVSYFGWGEVIAIFNDDDQGRNGVTALGDKL 206 (953)
Q Consensus 127 a~av~~v~~~~~vP~Is~~at~~~ls~~~~p~~fr~~p~d~~~~~ai~~~l~~~~w~~vaii~~d~~~g~~~~~~l~~~l 206 (953)
+.++++++++++||+|++ +.+.. ..+||+||+.|+ |+.+++++++++||++|++|| |++||.+..+.+.+++
T Consensus 73 ~~a~~~i~~~~~iP~is~--~~~~~--~~~~~~~r~~p~---~~~a~~~l~~~~gw~~v~ii~-d~~~g~~~~~~~~~~~ 144 (823)
T 3kg2_A 73 VNTITSFCGTLHVSFITP--SFPTD--GTHPFVIQMRPD---LKGALLSLIEYYQWDKFAYLY-DSDRGLSTLQAVLDSA 144 (823)
T ss_dssp HHHHHHHHHHTTCEEEEC--SCCCS--SCCSSEEECSCC---CHHHHHHHHHHTTCSEEEEEE-CGGGCTHHHHHHHHHH
T ss_pred HHHHHHHhhcCCCceeec--ccCCC--CCCceEEEeCCC---HHHHHHHHHHHCCCCEEEEEE-eCChhHHHHHHHHHHh
Confidence 999999999999999997 33333 357899999988 899999999999999999999 8889999999999999
Q ss_pred HhcCcEEEEEEecCCCCCCChHHHHHHHHHHhcCCceEEEEEcchhhHHHHHHHHHHcCCCCCceEEEEeCcccccccCC
Q 002211 207 AEIRCKISYKSALPPDQSVTETDVRNELVKVRMMEARVIVVHGYSRTGLMVFDVAQRLGMMDSGYVWIATTWLSTFIDSK 286 (953)
Q Consensus 207 ~~~g~~v~~~~~~~~~~~~~~~d~~~~l~~i~~~~~~vii~~~~~~~~~~~~~~a~~~g~~~~~~~wi~~~~~~~~~~~~ 286 (953)
++.|+||++.+.++.+...++.|+..++++|+++++|+||+++...++..++++|+++||++++|+||.++......+.
T Consensus 145 ~~~g~~v~~~~~~~~~~~~~~~d~~~~l~~i~~~~~~vii~~~~~~~~~~~~~~a~~~g~~~~~~~~i~~~~~~~~~~~- 223 (823)
T 3kg2_A 145 AEKKWQVTAINVGNINNDKKDETYRSLFQDLELKKERRVILDCERDKVNDIVDQVITIGKHVKGYHYIIANLGFTDGDL- 223 (823)
T ss_dssp HHTTCEEEEEECSSCCSSSTTTTTTTHHHHTTTTTCCEEEEECCHHHHHHHHHHHHHHTTTBTTCEEEECSSBSSSSCC-
T ss_pred hccCCceEEEEeecCCCCccchhHHHHHHHHHhcCCeEEEEECCHHHHHHHHHHHHHcCcCCCCeEEEEecccccccch-
Confidence 9999999998877754223367899999999999999999999999999999999999999999999999854333322
Q ss_pred CCCchhhhhhccceEEEEEecCCChhhHHHHHHHHhhcCCC------CCCCchhhHHhhHHHHHHHHHHHHHhcCCcccc
Q 002211 287 SPLSLKTAKSILGALTLRQHTPDSKRRRDFVSRWNTLSNGS------IGLNPYGLYAYDTVWMIARALKLFLDQGNTISF 360 (953)
Q Consensus 287 ~~~~~~~~~~~~g~~~~~~~~~~~~~~~~F~~~~~~~~~~~------~~~~~~~~~~YDAv~~la~Al~~~~~~~~~~~~ 360 (953)
........|++++.++.++.+.+++|.++|+++++.. ..++.+++++||||+++|+|+++++.++.....
T Consensus 224 ----~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~a~~~YDAv~~la~Al~~~~~~~~~~~~ 299 (823)
T 3kg2_A 224 ----LKIQFGGAEVSGFQIVDYDDSLVSKFIERWSTLEEKEYPGAHTATIKYTSALTYDAVQVMTEAFRNLRKQRIEISR 299 (823)
T ss_dssp ----SSSSSSBCEEEEEESSCTTSHHHHHHHHHHTTSCTTTSTTCCSSCCCHHHHHHHHHHHHHHHHHHHHHTTTCCCCC
T ss_pred ----HHhhcCCCCceEeeeecCCchHHHHHHHHHHhhcccccCCCCccccchhhHHHHHHHHHHHHHHHHHHhhcccccc
Confidence 1233455678999999999999999999999987622 236778999999999999999999876544321
Q ss_pred cCCCccCCCCCCcccCCCc--cccCchHHHHHHHHhcccCCcceeEEEccCCCCCCccEEEEEeecCCeeeEEEEecCCC
Q 002211 361 SNDTKLNGLGGGTLNLGAL--SIFDGGKKFLANILQTNMTGLSGPIHFNQDRSLLHPSYDIINVIEHGYPQQIGYWSNYS 438 (953)
Q Consensus 361 ~~~~~~~~~~~~~~~~~~~--~~~~~~~~l~~~l~~~~f~G~tG~v~Fd~~g~~~~~~y~I~~~~~~~~~~~VG~w~~~~ 438 (953)
. ....+|... ..|.+|++|+++|++++|+|++|+++||++|++....|+|+|+++++. ++||.|++..
T Consensus 300 ~---------~~~~~c~~~~~~~~~~g~~l~~~l~~~~f~G~tG~i~fd~~G~~~~~~~~I~~~~~~g~-~~vg~w~~~~ 369 (823)
T 3kg2_A 300 R---------GNAGDCLANPAVPWGQGVEIERALKQVQVEGLSGNIKFDQNGKRINYTINIMELKTNGP-RKIGYWSEVD 369 (823)
T ss_dssp S---------SCCCCTTCSSCCCCTHHHHHHHHHTTCCCEETTEECCBCSSSCBCSCEEEEEEECSSCE-EEEEEEETTT
T ss_pred C---------CCCCCccCCCCCcccchHHHHHHHHhcccCCcccCeEECCCCcccccEEEEEEEcCCCC-eeEEEEcCCC
Confidence 1 112234333 456789999999999999999999999999999889999999999998 9999999998
Q ss_pred CccccCCcccccCCCCCCCCCCcceeeEeCCCcccCCCcccccCCCcceEEEecCcccccccEEee------CCcceEEE
Q 002211 439 GLSVVPPEKLYRKPANRSSSNQHLYSVVWPGGVTSKPRGWVFPNNGRQLRIGVPNRVSYRDFVFKV------NGTDIVHG 512 (953)
Q Consensus 439 gl~~~~~~~~~~~~~~~~~~~~~l~~i~Wpg~~~~~P~~~~~~~~g~~lri~v~~~~~~~p~~~~~------~~~~~~~G 512 (953)
|+....+ + ....+|++|+|++.. ++||.+.+ ++++++.|
T Consensus 370 g~~~~~~------------------------------~--~~~~~~~~l~v~~~~---~~P~~~~~~~~~~~~~~~~~~G 414 (823)
T 3kg2_A 370 KMVLTED------------------------------D--TSGLEQKTVVVTTIL---ESPYVMMKANHAALAGNERYEG 414 (823)
T ss_dssp EEEECCC------------------------------C--CSSCCCCCEEEEECC---CTTTSEECTTGGGCCGGGGEES
T ss_pred CceeccC------------------------------c--ccccCCCEEEEEEec---CCCcEEEecCccccCCCCceEE
Confidence 7653211 0 012357899999874 56776653 24679999
Q ss_pred eeHHHHHHHHHhCCCcccEEEeeC---CC-CCCCCChHHHHHHHHcCceeEEEecEEEecCccceeeccccceecceEEE
Q 002211 513 YCIDVFLAAVRLLPYAVPYKFIPY---GD-GHKNPTYSELINQITTGVFDAAVGDIAIVTNRTKAVDFTQPYIESGLVVV 588 (953)
Q Consensus 513 ~~~dll~~la~~l~~~~~~~~~~~---~~-~~~n~~~~~~i~~l~~g~~Di~~~~~~~t~~r~~~vdft~p~~~~~~~~~ 588 (953)
||+|+++++++++||+++++.++. |. ...|++|++++++|.+|++|++++++++|++|.+.+|||.||+.++++++
T Consensus 415 ~~~dl~~~~a~~l~~~~~~~~~~~~~~g~~~~~~g~~~~~~~~l~~~~~D~~~~~~~~t~~R~~~~dfs~py~~~~~~~~ 494 (823)
T 3kg2_A 415 YCVDLAAEIAKHCGFKYKLTIVGDGKYGARDADTKIWNGMVGELVYGKADIAIAPLTITLVREEVIDFSKPFMSLGISIM 494 (823)
T ss_dssp HHHHHHHHHHHHHTCCEEEEECSSCCCCCBCTTTCCBCHHHHHHHTTSCSEECSCCBCCHHHHTTEEECSCSEEECEEEE
T ss_pred EHHHHHHHHHHHcCCcEEEEEccCCcccccCCCCCchhhHHHhhccccCcEEecceecchhheeeEEeccchhhCCEEEE
Confidence 999999999999999988777763 32 23578899999999999999999999999999999999999999999999
Q ss_pred Eeccc-CCcCcceeeccCchhHHHHHHHHHHHHHHHhhhhhcccCCCCCCCC--------------cccchhhHHHHHHH
Q 002211 589 APVRK-LNSSAWAFLRPFTPLMWAVTGVFFLVVGTVVWILEHRLNDEFRGPP--------------RKQIVTVLWFSFST 653 (953)
Q Consensus 589 v~~~~-~~~~~~~~l~PF~~~vW~~i~~~~~~~~~~~~~l~~~~~~~~~~~~--------------~~~~~~~~~~~~~~ 653 (953)
+|++. ..++++.|++||++.+|++++++++++++++|++++..+.+|+.+. ..++.+++|+++++
T Consensus 495 v~~~~~~~~~~~~fl~Pf~~~vW~~i~~~~~~~~~~l~~~~~~~p~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 574 (823)
T 3kg2_A 495 IKKPQKSKPGVFSFLDPLAYEIWMCIVFAYIGVSVVLFLVSRFSPYEWHTEEFEDGRETQSSESTNEFGIFNSLWFSLGA 574 (823)
T ss_dssp EECCCCCCCCGGGTTTTSCHHHHHHHHHHHHHHHTTGGGTC-----------------------CHHHHHHHHHHHTTTT
T ss_pred EECCCcccccchHhhcCCchhHHHHHHHHHHHHHHHHHHHHhcChhhccCcccccccccccccccccccHHHHHHHHHHH
Confidence 99987 4578999999999999999999999999999999998755443221 23477999999999
Q ss_pred hhccccC-CcccchhHHHHHHHHHHHHHhhhhcccceeeeeeeccccCCCCChHHhhhCC-CeEEEEeCchHHHHHHHhh
Q 002211 654 MFFAHRE-NTVSTLGRVVLIIWLFVVLIITSSYTASLTSILTVQQLSSPIKGIDTLMTSN-DRVGYQVGSFAENYLIEEL 731 (953)
Q Consensus 654 l~~~~~~-~~~s~~~R~l~~~w~~~~lil~~~Yta~L~s~Lt~~~~~~~I~sl~dL~~~~-~~ig~~~~s~~~~~l~~~~ 731 (953)
+++|+.+ .|++.++|+++++|||++||++++|||+|+|+||++++.++|+|++||.+++ .++|+..++...+++.+.
T Consensus 575 l~~~g~~~~p~~~~~R~~~~~w~~~~lil~~~Yta~L~s~Lt~~~~~~~I~s~~dL~~~~~i~~~~~~~~~~~~~~~~~- 653 (823)
T 3kg2_A 575 FMQQGADISPRSLSGRIVGGVWWFFTLIIISSYTANLAAFLTVERMVSPIESAEDLSKQTEIAYGTLDSGSTKEFFRRS- 653 (823)
T ss_dssp SCC------CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCSSHHHHHCCSSEEECBSSSHHHHHHHHC-
T ss_pred HHhcCCCcCCcchhhhhHHHHHHHHHHHHHHHHHHHHHHHhcccccCCCCCCHHHHhhCCCeeEEEEeCCcHHHHHHhc-
Confidence 9988865 7999999999999999999999999999999999999999999999999865 457777777777887542
Q ss_pred CCCc-c----------ceEeCCCHHHHHHHHH-cCCcEEEEccchhHHHHHhcC-cceEEeCCccccCccEEEecCCCcc
Q 002211 732 SIPK-S----------RLVALGSPEEYAIALE-NRTVAAVVDERPYIDLFLSDH-CQFSVRGQEFTKSGWGFAFPRDSPL 798 (953)
Q Consensus 732 ~~~~-~----------~~~~~~~~~~~~~~l~-~g~~~a~~~~~~~~~~~~~~~-~~l~~~~~~~~~~~~~~~~~k~spl 798 (953)
+... . ....+++.+|++++++ +++.+|++.+.+.++|+.+++ |+++.+++.+...++++++||||||
T Consensus 654 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~y~~~~~~c~l~~v~~~~~~~~~~~~~~k~spl 733 (823)
T 3kg2_A 654 KIAVFDKMWTYMRSAEPSVFVRTTAEGVARVRKSKGKYAYLLESTMNEYIEQRKPCDTMKVGGNLDSKGYGIATPKGSSL 733 (823)
T ss_dssp CCHHHHHHHHHHHHCSSCCCBSSHHHHHHHHHTTTTSEEEEEEHHHHHHHHTSTTCCEEEESCCSSCEEECCEEETTCSS
T ss_pred cchHHHHHHHHHHhcCCccccCCHHHHHHHHhccCCceEEEechHHHHHHHhcCCCceEEccccccccceeEeecCCChH
Confidence 1110 0 1123569999999998 577899999999999988775 9999999999999999999999999
Q ss_pred hHHHHHHHHhhhccccHHHHHHHhcc-cCCCCCCCCC--CCCCccccccchHHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Q 002211 799 AIDMSTAILTLSENGELQRIHDKWLR-KKACSSESSQ--SDSEQLQIQSFRGLFLICGIACFLALLAYFCLMLRQFKKYS 875 (953)
Q Consensus 799 ~~~~n~~i~~l~e~G~~~~~~~~w~~-~~~c~~~~~~--~~~~~l~l~~~~g~f~il~~g~~lallvf~~e~~~~~~~~~ 875 (953)
++.||++|++++|+|++++|+++|+. ...|...... ....+|+++++.|+|+++++|+++|+++|++|++|++++++
T Consensus 734 ~~~~~~~il~l~e~G~~~~~~~~w~~~~~~c~~~~~~~~~~~~~L~l~~l~g~f~il~~g~~la~~vf~~E~~~~~~~~~ 813 (823)
T 3kg2_A 734 GTPVNLAVLKLSEQGLLDKLKNKWWYDKGECGAKDSGSKEKTSALSLSNVAGVFYILVGGLGLAMLVALIEFCYKSRAEA 813 (823)
T ss_dssp HHHHHHHHHHHHHTTHHHHHHHHHHTTSCSCSSTTTSTTTCCCSCCSHHHHHHHHHHHHHHHHHHHHHHHHHHHC-----
T ss_pred HHHHHHHHHHHHhCCcHHHHHHhhCcCCCCCCCCCccccccCCccchhhhhhHHHHHHHHHHHHHHHHHHHHHHHcchhh
Confidence 99999999999999999999999997 7788876432 35679999999999999999999999999999998776654
Q ss_pred c
Q 002211 876 A 876 (953)
Q Consensus 876 ~ 876 (953)
+
T Consensus 814 ~ 814 (823)
T 3kg2_A 814 K 814 (823)
T ss_dssp -
T ss_pred h
Confidence 4
No 2
>3o21_A Glutamate receptor 3; periplasmatic binding protein, oligomerization, membrane, TR protein; HET: NAG; 2.20A {Rattus norvegicus} PDB: 3p3w_A
Probab=100.00 E-value=2.5e-52 Score=471.41 Aligned_cols=368 Identities=17% Similarity=0.261 Sum_probs=318.3
Q ss_pred CceEEEeEEEecCCCchhHHHHHHHHHHHHHhcCCCC-CCCcEEEEEEecCCC-ChHHHHHHHHHHHhcCcEEEEccCCh
Q 002211 47 PEVLNVGAIFSFGTVNGQVSRIAMKAAQDDINSDPRV-LGGRKLSITMHDAKF-NGFLSIMGALQFMETDTLAIVGPQSA 124 (953)
Q Consensus 47 ~~~i~IG~l~~~~~~~g~~~~~a~~lAve~iN~~g~i-l~g~~l~l~~~D~~~-~~~~a~~~a~~li~~~v~aiiGp~~S 124 (953)
+++|+||+++|++.. ..+.|+++|+||||++|++ |+|++|+++++|++| ||.+|+.++++|++++|+|||||.+|
T Consensus 3 ~~~i~IG~i~~~sg~---~~~~a~~lAv~eiN~~g~ill~g~~l~~~~~D~~~~d~~~a~~~a~~li~~~V~aiiG~~~S 79 (389)
T 3o21_A 3 PNTISIGGLFMRNTV---QEHSAFRFAVQLYNTNQNTTEKPFHLNYHVDHLDSSNSFSVTNAFCSQFSRGVYAIFGFYDQ 79 (389)
T ss_dssp CSEEEEEEEECTTCH---HHHHHHHHHHHHHHSCCCTTTCSSEEEEEEEECCTTCHHHHHHHHHHHHTTTCSCEEECCCT
T ss_pred CceeEEEEEeCCCCH---HHHHHHHHHHHHHhcCccccCCCcEEEEEEEecCCCChHHHHHHHHHHHhcCcEEEEeCCCh
Confidence 679999999999875 7899999999999999999 699999999999988 99999999999999999999999999
Q ss_pred hhHHHHHHhhhhCCCcEEEeecCCCCCCCCCCCcEEEccCChHHHHHHHHHHHHHcCCcEEEEEEecCccccchHHHHHH
Q 002211 125 VMAHVLSHLANELQVPLLSFTALDPTLSPLQYPFFVQTAPNDLYLMSAIAEMVSYFGWGEVIAIFNDDDQGRNGVTALGD 204 (953)
Q Consensus 125 ~~a~av~~v~~~~~vP~Is~~at~~~ls~~~~p~~fr~~p~d~~~~~ai~~~l~~~~w~~vaii~~d~~~g~~~~~~l~~ 204 (953)
..+.+++++++.++||+|++++ |.++ ..+|.||+.|+ |+.+++++++++||++|++|| |++||....+.|.+
T Consensus 80 ~~~~a~~~i~~~~~iP~Is~s~--~~~~--~~~~~~~~~p~---~~~a~~~~~~~~gw~~vaii~-d~~~g~~~~~~~~~ 151 (389)
T 3o21_A 80 MSMNTLTSFCGALHTSFVTPSF--PTDA--DVQFVIQMRPA---LKGAILSLLSYYKWEKFVYLY-DTERGFSVLQAIME 151 (389)
T ss_dssp TTHHHHHHHHHHHTCCEEECSC--CCSS--CCSSEEECSCC---SHHHHHHHHHHHTCCEEEEEE-CSTTCSHHHHHHHH
T ss_pred hHHHHHHHHhccCCCceeecCC--CCcc--CCceEEEEccC---HHHHHHHHHHhCCCCEEEEEE-cCcHHHHHHHHHHH
Confidence 9999999999999999998753 4443 34566777776 899999999999999999999 88999999999999
Q ss_pred HHHhcCcEEEEEEecCCCCCCChHHHHHHHHHHhcCCceEEEEEcchhhHHHHHHHHHHcCCCCCceEEEEeCccccccc
Q 002211 205 KLAEIRCKISYKSALPPDQSVTETDVRNELVKVRMMEARVIVVHGYSRTGLMVFDVAQRLGMMDSGYVWIATTWLSTFID 284 (953)
Q Consensus 205 ~l~~~g~~v~~~~~~~~~~~~~~~d~~~~l~~i~~~~~~vii~~~~~~~~~~~~~~a~~~g~~~~~~~wi~~~~~~~~~~ 284 (953)
++++.|+||+..+.++.. .+.|+..+|++|+++++|+||+++...++..+++||+++||+.++|+||.++.+....+
T Consensus 152 ~~~~~g~~v~~~~~~~~~---~~~d~~~~l~~ik~~~~~vii~~~~~~~~~~i~~qa~~~g~~~~~~~~i~~~~~~~~~~ 228 (389)
T 3o21_A 152 AAVQNNWQVTARSVGNIK---DVQEFRRIIEEMDRRQEKRYLIDCEVERINTILEQVVILGKHSRGYHYMLANLGFTDIL 228 (389)
T ss_dssp HHHHTTCEEEEEECTTCC---CTHHHHHHHHHHHTTTCCEEEEESCHHHHHHHHHHHHHHCSCSTTCEEEECCTTGGGCC
T ss_pred HhhcCCCeEEEEEecCCC---CcHHHHHHHHHHHhCCCeEEEEECCHHHHHHHHHHHHHcCcccCCeEEEEccCCccccc
Confidence 999999999998877643 25699999999999999999999999999999999999999999999999885544433
Q ss_pred CCCCCchhhhhhccceEEEEEecCCChhhHHHHHHHHhhcCCC------CCCCchhhHHhhHHHHHHHHHHHHHhcCCcc
Q 002211 285 SKSPLSLKTAKSILGALTLRQHTPDSKRRRDFVSRWNTLSNGS------IGLNPYGLYAYDTVWMIARALKLFLDQGNTI 358 (953)
Q Consensus 285 ~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~F~~~~~~~~~~~------~~~~~~~~~~YDAv~~la~Al~~~~~~~~~~ 358 (953)
. ........|++++..+.+++|.+++|+++|+++++.. ..++.+++++||||+++|+|++++..++...
T Consensus 229 ~-----~~~~~~~~~~~~~~~~~~~~~~~~~F~~~~~~~~~~~~~~~~~~~~~~~a~~~YDAv~~~a~Al~~~~~~~~~~ 303 (389)
T 3o21_A 229 L-----ERVMHGGANITGFQIVNNENPMVQQFIQRWVRLDEREFPEAKNAPLKYTSALTHDAILVIAEAFRYLRRQRVDV 303 (389)
T ss_dssp C-----HHHHHTTCEEEEEESCCTTCHHHHHHHHHHTTSCTTTSTTSSSSCCCHHHHHHHHHHHHHHHHHHHHHHTTCCC
T ss_pred H-----HHHhcCCcceEEEEEecCCChhHHHHHHHHHhccccccCCCCCCccchhHHHHHHHHHHHHHHHHHHHhhCccc
Confidence 2 2344566789999989999999999999999988631 1357889999999999999999998654332
Q ss_pred cccCCCccCCCCCCcccC--CCccccCchHHHHHHHHhcccCCcceeEEEccCCCCCCccEEEEEeecCCeeeEEEEecC
Q 002211 359 SFSNDTKLNGLGGGTLNL--GALSIFDGGKKFLANILQTNMTGLSGPIHFNQDRSLLHPSYDIINVIEHGYPQQIGYWSN 436 (953)
Q Consensus 359 ~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~l~~~l~~~~f~G~tG~v~Fd~~g~~~~~~y~I~~~~~~~~~~~VG~w~~ 436 (953)
.+. +....| +...+|.+|.+|+++|++++|+|++|+++||++|++....|+|+|+.+++. ++||+|++
T Consensus 304 ~~~---------~~~~~~~~~~~~~~~~g~~l~~~l~~~~f~G~tG~i~Fd~~G~~~~~~~~i~~~~~~g~-~~VG~w~~ 373 (389)
T 3o21_A 304 SRR---------GSAGDCLANPAVPWSQGIDIERALKMVQVQGMTGNIQFDTYGRRTNYTIDVYEMKVSGS-RKAGYWNE 373 (389)
T ss_dssp C--------------CCSCSSSCCCTTTTHHHHHHHHTCCEEETTEEECBCTTSBBCSCCEEEEEEETTEE-EEEEEEET
T ss_pred ccC---------CCCCcCCCCCCCCCCCcHHHHHHHHhCcccccceeeeeCCCCCcccceEEEEEEcCCCc-eeeeEEcC
Confidence 111 111233 344668889999999999999999999999999998889999999998888 99999999
Q ss_pred CCCcccc
Q 002211 437 YSGLSVV 443 (953)
Q Consensus 437 ~~gl~~~ 443 (953)
..||+..
T Consensus 374 ~~g~~~~ 380 (389)
T 3o21_A 374 YERFVPF 380 (389)
T ss_dssp TTEEECC
T ss_pred CCCcccc
Confidence 9998754
No 3
>3om0_A Glutamate receptor, ionotropic kainate 5; membrane protein, ION channel; HET: NAG BMA GOL; 1.40A {Rattus norvegicus} PDB: 3om1_A* 3qlu_A* 3qlv_A
Probab=100.00 E-value=7.9e-51 Score=461.16 Aligned_cols=369 Identities=19% Similarity=0.273 Sum_probs=311.5
Q ss_pred ceEEEeEEEecCCCchhHHHHHHHHHHHHHhcCCCCCCCcEEEEEEecCCCChH-HHHHHHHHHHhcCcEEEEccCChhh
Q 002211 48 EVLNVGAIFSFGTVNGQVSRIAMKAAQDDINSDPRVLGGRKLSITMHDAKFNGF-LSIMGALQFMETDTLAIVGPQSAVM 126 (953)
Q Consensus 48 ~~i~IG~l~~~~~~~g~~~~~a~~lAve~iN~~g~il~g~~l~l~~~D~~~~~~-~a~~~a~~li~~~v~aiiGp~~S~~ 126 (953)
++|+||+++|+++..|...+.|+++|+||||++||+|+|++|+++++|+++++. .+..+++++++++|.+||||.+|+.
T Consensus 3 ~~ikIG~~~~~s~~~G~~~~~a~~lAv~eiN~~ggil~g~~l~~~~~D~~~~~~~~~~~~~~~l~~~~V~aiiG~~~S~~ 82 (393)
T 3om0_A 3 SSLRMAAILDDQTVCGRGERLALALAREQINGIIEVPAKARVEVDIFELQRDSQYETTDTMCQILPKGVVSVLGPSSSPA 82 (393)
T ss_dssp CEEEEEEEECCCCSSCCCHHHHHHHHHHHHHHSCCSSCCCEEEEEEEECCSSCHHHHHHHHHHHGGGCCSCEECCSSCHH
T ss_pred cceeEEEEecCCCcccHHHHHHHHHHHHHHhcCcccccCcEEEEEEEecCCCchhHHHHHHHHHHhcCcEEEECCCCchh
Confidence 479999999999999999999999999999999999999999999999999764 5667888998889999999999954
Q ss_pred -HHHHHHhhhhCCCcEEEeecCCCCCCC-CCCCcE--EEccCChHHHHHHHHHHHHHcCCcEEEEEEecCccccchHHHH
Q 002211 127 -AHVLSHLANELQVPLLSFTALDPTLSP-LQYPFF--VQTAPNDLYLMSAIAEMVSYFGWGEVIAIFNDDDQGRNGVTAL 202 (953)
Q Consensus 127 -a~av~~v~~~~~vP~Is~~at~~~ls~-~~~p~~--fr~~p~d~~~~~ai~~~l~~~~w~~vaii~~d~~~g~~~~~~l 202 (953)
+.+++++++++++|+|++++++ ++ .++|+| ||+.|++..|+.+++++++++||++|++||+|++||+.+.+.+
T Consensus 83 ~~~a~~~i~~~~~ip~is~~a~~---~~~~~~~~~~~fr~~p~~~~~~~~~~~~~~~~g~~~vaii~~~~~~g~~l~~~~ 159 (393)
T 3om0_A 83 SASTVSHICGEKEIPHIKVGPEE---TPRLQYLRFASVSLYPSNEDVSLAVSRILKSFNYPSASLICAKAECLLRLEELV 159 (393)
T ss_dssp HHHHHHHHHHHHTCCEEECSCCC---CC----CCSCCEESSCCHHHHHHHHHHHHHHTTSCCEEEEESSTTHHHHTHHHH
T ss_pred HHHHHHHHHhccCCCeEeccCCc---CccccccccceEEecCCHHHHHHHHHHHHHhCCCcEEEEEEeCchHHHHHHHHH
Confidence 5799999999999999998775 23 568998 9999999999999999999999999999999999998876666
Q ss_pred HHHHHhcCcEEEEEEecCCCCCCChHHHHHHHHHHhcCCceEEEEEcchhhHHHHHHHHHHcCCCCCceEEEEeCccccc
Q 002211 203 GDKLAEIRCKISYKSALPPDQSVTETDVRNELVKVRMMEARVIVVHGYSRTGLMVFDVAQRLGMMDSGYVWIATTWLSTF 282 (953)
Q Consensus 203 ~~~l~~~g~~v~~~~~~~~~~~~~~~d~~~~l~~i~~~~~~vii~~~~~~~~~~~~~~a~~~g~~~~~~~wi~~~~~~~~ 282 (953)
+.+.+.|++|+... + ++ ..|++.++++|+++++|+|++++.+.++..+++|++++||+.++|+||.+++....
T Consensus 160 -~~~~~~g~~v~~~~-~-~~----~~d~~~~l~~i~~~~~~vii~~~~~~~~~~~~~~a~~~g~~~~~~~~i~~~~~~~~ 232 (393)
T 3om0_A 160 -RGFLISKETLSVRM-L-DD----SRDPTPLLKEIRDDKVSTIIIDANASISHLVLRKASELGMTSAFYKYILTTMDFPI 232 (393)
T ss_dssp -HHHHHSSSCEEEEE-C-C-----CCCSHHHHHHHHHHTCSEEEEESCHHHHHHHHHHHHHTTTTSTTCEEEECCTTGGG
T ss_pred -HhhhccCCeEEEEe-c-CC----CCCHHHHHHHHHhcCCeEEEEECCHHHHHHHHHHHHHcCcccCCeEEEEecccccc
Confidence 45777899997654 4 34 56899999999999999999999999999999999999999989999999876544
Q ss_pred ccCCCCCchhhhhhccceEEEEEecCCChhhHHHHHHHHhhcCCC------CCCCchhhHHhhHHHHHHHHHHHHHhcCC
Q 002211 283 IDSKSPLSLKTAKSILGALTLRQHTPDSKRRRDFVSRWNTLSNGS------IGLNPYGLYAYDTVWMIARALKLFLDQGN 356 (953)
Q Consensus 283 ~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~F~~~~~~~~~~~------~~~~~~~~~~YDAv~~la~Al~~~~~~~~ 356 (953)
.+.. .......|++++..+.++.|.+++|.++|+++|+.. ..|+.+++++|||++++|+|++++.+...
T Consensus 233 ~~l~-----~~~~~~~~~~g~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~p~~~a~~~YDAv~~la~Al~~~~~~~~ 307 (393)
T 3om0_A 233 LHLD-----GIVEDSSNILGFSMFNTSHPFYPEFVRSLNMSWRENCEASTYPGPALSAALMFDAVHVVVSAVRELNRSQE 307 (393)
T ss_dssp CCCT-----TTCCSSCSEEEEECCCTTSTTHHHHHHHHHHHHTTTSCGGGCCSCCHHHHHHHHHHHHHHHHHHHHTTTSC
T ss_pred cchh-----hhhccCCcEEEEEEecCCccHHHHHHHHHHHHhhhhccCCCCCCCchHHHHHHhHHHHHHHHHHHHhhccc
Confidence 3331 123456789999988888999999999998888621 24778999999999999999999854311
Q ss_pred cccccCCCccCCCCCCcccCCCccccCchHHHHHHHHhcccCCcceeEEEccCCCCCCccEEEEEeecCCeeeEEEEecC
Q 002211 357 TISFSNDTKLNGLGGGTLNLGALSIFDGGKKFLANILQTNMTGLSGPIHFNQDRSLLHPSYDIINVIEHGYPQQIGYWSN 436 (953)
Q Consensus 357 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~f~G~tG~v~Fd~~g~~~~~~y~I~~~~~~~~~~~VG~w~~ 436 (953)
......+|....+|.++.+|+++|++++|+|++|+++||++|++....|+|+++++++. ++||+|++
T Consensus 308 ------------~~~~~~~c~~~~~~~~g~~l~~~l~~~~f~G~tG~i~fd~~G~~~~~~~~i~~~~~~g~-~~VG~w~~ 374 (393)
T 3om0_A 308 ------------IGVKPLACTSANIWPHGTSLMNYLRMVEYDGLTGRVEFNSKGQRTNYTLRILEKSRQGH-REIGVWYS 374 (393)
T ss_dssp ------------CCCCCCCTTCCCCCTTHHHHHHHHTTCCEEETTEEECBCTTSCBCSCEEEEEEEETTEE-EEEEEEEC
T ss_pred ------------CcCCCcCCCCCCcccCchHHHHHHHhCCCCCccceEEeCCCCcccceeEEEEEeccCCc-eEeeeEcC
Confidence 11233457777788889999999999999999999999999998889999999998887 99999999
Q ss_pred CCCccccC
Q 002211 437 YSGLSVVP 444 (953)
Q Consensus 437 ~~gl~~~~ 444 (953)
..||++..
T Consensus 375 ~~gl~~~~ 382 (393)
T 3om0_A 375 NRTLAMNA 382 (393)
T ss_dssp C-------
T ss_pred CCCccccc
Confidence 99987653
No 4
>4f11_A Gamma-aminobutyric acid type B receptor subunit 2; venus flytrap module, G-protein coupled receptor, signaling; 2.38A {Homo sapiens} PDB: 4f12_A*
Probab=100.00 E-value=1.9e-50 Score=464.42 Aligned_cols=387 Identities=18% Similarity=0.266 Sum_probs=326.8
Q ss_pred CCCceEEEeEEEecCC-----CchhHHHHHHHHHHHHHhcCCCCCCCcEEEEEEecCCCChHHHHHHHHHHHhc--CcEE
Q 002211 45 LKPEVLNVGAIFSFGT-----VNGQVSRIAMKAAQDDINSDPRVLGGRKLSITMHDAKFNGFLSIMGALQFMET--DTLA 117 (953)
Q Consensus 45 ~~~~~i~IG~l~~~~~-----~~g~~~~~a~~lAve~iN~~g~il~g~~l~l~~~D~~~~~~~a~~~a~~li~~--~v~a 117 (953)
...++|+||+++|++. ..|...+.|+++|+|+||++ |+++|++|+++++|++++|..|+.++++|+.+ +|.+
T Consensus 10 ~~~~~i~IG~~~plsG~~a~~~~g~~~~~~~~lAv~~iN~~-g~l~g~~l~l~~~D~~~~~~~a~~~a~~li~~~~~v~a 88 (433)
T 4f11_A 10 PSSPPLSIMGLMPLTKEVAKGSIGRGVLPAVELAIEQIRNE-SLLRPYFLDLRLYDTECDNAKGLKAFYDAIKYGPNHLM 88 (433)
T ss_dssp -CCCEEEEEEEECCCTTSTTHHHHHHHHHHHHHHHHHHHHT-TTTTTCEEEEEEEECTTCHHHHHHHHHHHHHHSCCCSE
T ss_pred CCCCceEEEEEEEecCCCCCCccchhHHHHHHHHHHHHhcc-CCCCCCEEEEEEecCCCCHHHHHHHHHHHHhcCCceEE
Confidence 4567999999999985 45889999999999999999 77789999999999999999999999999985 8999
Q ss_pred EEccCChhhHHHHHHhhhhCCCcEEEeecCCCCCCC-CCCCcEEEccCChHHHHHHHHHHHHHcCCcEEEEEEecCcccc
Q 002211 118 IVGPQSAVMAHVLSHLANELQVPLLSFTALDPTLSP-LQYPFFVQTAPNDLYLMSAIAEMVSYFGWGEVIAIFNDDDQGR 196 (953)
Q Consensus 118 iiGp~~S~~a~av~~v~~~~~vP~Is~~at~~~ls~-~~~p~~fr~~p~d~~~~~ai~~~l~~~~w~~vaii~~d~~~g~ 196 (953)
||||.+|..+.+++++++.+++|+|+++++++.+++ ..|||+||+.|++..++.+++++++++||++|++||+|++||+
T Consensus 89 viG~~~S~~~~a~~~~~~~~~ip~is~~~~~~~l~~~~~~~~~fr~~~~~~~~~~~~~~~~~~~g~~~v~ii~~~~~~g~ 168 (433)
T 4f11_A 89 VFGGVCPSVTSIIAESLQGWNLVQLSFAATTPVLADKKKYPYFFRTVPSDNAVNPAILKLLKHYQWKRVGTLTQDVQRFS 168 (433)
T ss_dssp EEECCSHHHHHHHHHTHHHHTCEEEESSCCCGGGGCTTTCTTEEESSCCGGGHHHHHHHHHHHTTCCEEEEEEESSHHHH
T ss_pred EECCCcchHHHHHHHHHHhcCceEEEcccCCccccccccCCceEEecCchHHHHHHHHHHHHHcCCcEEEEEEecchhhH
Confidence 999999999999999999999999999999999998 5799999999999999999999999999999999999999999
Q ss_pred chHHHHHHHHHhcCcEEEEEEecCCCCCCChHHHHHHHHHHhcCCceEEEEEcchhhHHHHHHHHHHcCCCCCceEEEEe
Q 002211 197 NGVTALGDKLAEIRCKISYKSALPPDQSVTETDVRNELVKVRMMEARVIVVHGYSRTGLMVFDVAQRLGMMDSGYVWIAT 276 (953)
Q Consensus 197 ~~~~~l~~~l~~~g~~v~~~~~~~~~~~~~~~d~~~~l~~i~~~~~~vii~~~~~~~~~~~~~~a~~~g~~~~~~~wi~~ 276 (953)
...+.|.+.+++.|++|+..+.++. |+..++++|+++++|+|++++.+.++..++++++++|+..++|+||++
T Consensus 169 ~~~~~~~~~~~~~g~~v~~~~~~~~-------d~~~~l~~i~~~~~~vii~~~~~~~~~~~~~~a~~~g~~~~~~~~i~~ 241 (433)
T 4f11_A 169 EVRNDLTGVLYGEDIEISDTESFSN-------DPCTSVKKLKGNDVRIILGQFDQNMAAKVFCCAYEENMYGSKYQWIIP 241 (433)
T ss_dssp HHHHHHHHHSSSSSCEEEEEEEESS-------CCHHHHHHHHHTTCCEEEEECCHHHHHHHHHHHHHTTCCSTTCEEEEE
T ss_pred HHHHHHHHHHHHcCceEEEEeccCc-------CHHHHHHHHhhCCCeEEEEeCcHHHHHHHHHHHHHcCCCCCCeEEEEc
Confidence 9999999999999999999888863 567899999999999999999999999999999999999888999999
Q ss_pred Cccccccc--------CCCCCchhhhhhccceEEEEEecCCC--------hhhHHHHHHHHhh-cCCCCCCCchhhHHhh
Q 002211 277 TWLSTFID--------SKSPLSLKTAKSILGALTLRQHTPDS--------KRRRDFVSRWNTL-SNGSIGLNPYGLYAYD 339 (953)
Q Consensus 277 ~~~~~~~~--------~~~~~~~~~~~~~~g~~~~~~~~~~~--------~~~~~F~~~~~~~-~~~~~~~~~~~~~~YD 339 (953)
++....+. ...+......++++|++++.++.+.. +..++|.++|+++ ++ ..++.+++++||
T Consensus 242 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~~~~~~~f~~~y~~~~~~--~~~~~~a~~~YD 319 (433)
T 4f11_A 242 GWYEPSWWEQVHTEANSSRCLRKNLLAAMEGYIGVDFEPLSSKQIKTISGKTPQQYEREYNNKRSG--VGPSKFHGYAYD 319 (433)
T ss_dssp SCSCTTTTTCC------CCSCHHHHHHHHTTCEEEEECSSCCCCCCCTTSCCHHHHHHHHHHHHTT--SCCCTTHHHHHH
T ss_pred CcchHhHhcccccCCCCCCCCHHHHHHHHhCEEEEEEeecCCCCCcccCCCCHHHHHHHHHHhcCC--CCcccchhhHHH
Confidence 98443321 11222345668899999999876532 3478999999987 55 678899999999
Q ss_pred HHHHHHHHHHHHHhcCCcccccCCCccCCCCCCcccCCCccccCchHHHHHHHHhcccCCcceeEEEccCCCCCCccEEE
Q 002211 340 TVWMIARALKLFLDQGNTISFSNDTKLNGLGGGTLNLGALSIFDGGKKFLANILQTNMTGLSGPIHFNQDRSLLHPSYDI 419 (953)
Q Consensus 340 Av~~la~Al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~f~G~tG~v~Fd~~g~~~~~~y~I 419 (953)
||+++|+|+++++.+..... .+ ..+..-+...+.++++|+++|++++|+|++|+++| ++|++ ...|+|
T Consensus 320 Av~~la~Al~~a~~~~~~~~---------~~-~~l~~~~~~~~~~~~~l~~~l~~~~f~G~tG~v~f-~~Gd~-~~~~~I 387 (433)
T 4f11_A 320 GIWVIAKTLQRAMETLHASS---------RH-QRIQDFNYTDHTLGRIILNAMNETNFFGVTGQVVF-RNGER-MGTIKF 387 (433)
T ss_dssp HHHHHHHHHHHHHHHHHHSS---------SC-CCGGGCSSCCHHHHHHHHHHHHTCEEEETTEEEEE-ETTEE-ECEEEE
T ss_pred HHHHHHHHHHHHHHHHhccC---------CC-CcccccccccHHHHHHHHHHHHhcEEEccceEEEE-ecCce-eeeEEE
Confidence 99999999999875411000 00 00110111234468999999999999999999999 89996 589999
Q ss_pred EEeecCCeeeEEEEecCCCC-ccccCCcccccCCCCCCCCCCcceeeEeCCCcc
Q 002211 420 INVIEHGYPQQIGYWSNYSG-LSVVPPEKLYRKPANRSSSNQHLYSVVWPGGVT 472 (953)
Q Consensus 420 ~~~~~~~~~~~VG~w~~~~g-l~~~~~~~~~~~~~~~~~~~~~l~~i~Wpg~~~ 472 (953)
++++++++ ++||.|++... |. .+...|.|||+.+
T Consensus 388 ~~~~~g~~-~~VG~~~~~~~~l~------------------~~~~~i~W~~~~~ 422 (433)
T 4f11_A 388 TQFQDSRE-VKVGEYNAVADTLE------------------IINDTIRFQGSEP 422 (433)
T ss_dssp EEEETTEE-EEEEEEETTTTEEE------------------ECTTTCCCSSSSC
T ss_pred EEEECCce-EEEEEEECCCCeEE------------------EeCCceECCCCCC
Confidence 99998665 99999987531 11 1123689999884
No 5
>3h6g_A Glutamate receptor, ionotropic kainate 2; membrane protein glycoprotein, cell junction, cell membrane, glycoprotein, ION transport; HET: NAG TLA; 2.70A {Rattus norvegicus} PDB: 3h6h_A* 3qlv_C 3qlu_C* 3qlt_A* 3olz_A*
Probab=100.00 E-value=3.7e-50 Score=456.09 Aligned_cols=371 Identities=21% Similarity=0.330 Sum_probs=322.3
Q ss_pred CceEEEeEEEecC-CCchhHHHHHHHHHHHHHhcCCCCCCCcEEEEEEecCC-CChHHHHHHHHHHHhcCcEEEEccCCh
Q 002211 47 PEVLNVGAIFSFG-TVNGQVSRIAMKAAQDDINSDPRVLGGRKLSITMHDAK-FNGFLSIMGALQFMETDTLAIVGPQSA 124 (953)
Q Consensus 47 ~~~i~IG~l~~~~-~~~g~~~~~a~~lAve~iN~~g~il~g~~l~l~~~D~~-~~~~~a~~~a~~li~~~v~aiiGp~~S 124 (953)
+++|+||+++|++ +..|...+.|+++|+||||++||+|+|++|++++.|+. .|+..+...+++|++++|.+||||.+|
T Consensus 2 ~~~i~IG~l~~~sg~~~g~~~~~a~~lAv~eiN~~ggil~~~~l~~~~~~~~~~d~~~~~~~a~~l~~~~V~aiiG~~~S 81 (395)
T 3h6g_A 2 THVLRFGGIFEYVESGPMGAEELAFRFAVNTINRNRTLLPNTTLTYDTQKINLYDSFEASKKACDQLSLGVAAIFGPSHS 81 (395)
T ss_dssp CEEEEEEEEEEESSSCSCCHHHHHHHHHHHHHHHCSSSSSSEEEEEEEEEEETTCHHHHHHHHHHHHHHCCSCEECCSSH
T ss_pred CcceEEEEEecCCCcccchHHHHHHHHHHHHHhcCccccCCceEEEEEeecCCcChHHHHHHHHHhhhcCcEEEECCCCh
Confidence 5789999999997 46788999999999999999999998889999999887 599999999999999999999999999
Q ss_pred hhHHHHHHhhhhCCCcEEEeecCCCCCCCCCCCcEEEccCChHHHHHHHHHHHHHcCCcEEEEEEecCccccchHHHHHH
Q 002211 125 VMAHVLSHLANELQVPLLSFTALDPTLSPLQYPFFVQTAPNDLYLMSAIAEMVSYFGWGEVIAIFNDDDQGRNGVTALGD 204 (953)
Q Consensus 125 ~~a~av~~v~~~~~vP~Is~~at~~~ls~~~~p~~fr~~p~d~~~~~ai~~~l~~~~w~~vaii~~d~~~g~~~~~~l~~ 204 (953)
..+.++++++++++||+|+++++++.+++ +.+|+||+.|++..|+.+++++++++||++|++|| |++||+...+.+.+
T Consensus 82 ~~~~a~~~~~~~~~ip~is~~~~~~~l~~-~~~~~~r~~~~~~~~~~~~~~~~~~~g~~~v~ii~-d~~~g~~~~~~~~~ 159 (395)
T 3h6g_A 82 SSANAVQSICNALGVPHIQTRWKHQVSDN-KDSFYVSLYPDFSSLSRAILDLVQFFKWKTVTVVY-DDSTGLIRLQELIK 159 (395)
T ss_dssp HHHHHHHHHHHHTTCCEEECSCCCCCTTC-CCCSEEEEEECHHHHHHHHHHHHHHTTCSEEEEEE-SSTHHHHHTHHHHT
T ss_pred hHHHHHHHHHhcCCCCeEeeccCcccccc-cCceEEEecCCHHHHHHHHHHHHHHCCCeEEEEEE-EChhHHHHHHHHHH
Confidence 99999999999999999999999999986 36889999999999999999999999999999998 77899999999999
Q ss_pred HHHhcCcEEEEEEecCCCCCCChHHHHHHHHHHhcCCceEEEEEcchhhHHHHHHHHHHcCCCCCceEEEEeCccccccc
Q 002211 205 KLAEIRCKISYKSALPPDQSVTETDVRNELVKVRMMEARVIVVHGYSRTGLMVFDVAQRLGMMDSGYVWIATTWLSTFID 284 (953)
Q Consensus 205 ~l~~~g~~v~~~~~~~~~~~~~~~d~~~~l~~i~~~~~~vii~~~~~~~~~~~~~~a~~~g~~~~~~~wi~~~~~~~~~~ 284 (953)
.+++.|++|+... ++.+ ..|+..++++|+++++|+|++++.+.++..+++|++++||+.+.|+||.++......+
T Consensus 160 ~~~~~g~~v~~~~-~~~~----~~d~~~~l~~i~~~~~~vi~~~~~~~~~~~~~~qa~~~gl~~~~~~~i~~~~~~~~~~ 234 (395)
T 3h6g_A 160 APSRYNLRLKIRQ-LPAD----TKDAKPLLKEMKRGKEFHVIFDCSHEMAAGILKQALAMGMMTEYYHYIFTTLDLFALD 234 (395)
T ss_dssp GGGTSSCEEEEEE-CCSS----GGGGHHHHHHHHHTTCCEEEEESCHHHHHHHHHHHHHTTCCSTTCEEEECCTTGGGBC
T ss_pred hhhcCCceEEEEE-eCCC----chhHHHHHHHHhhcCCeEEEEECCHHHHHHHHHHHHHccccCCceEEEEecCceeEec
Confidence 9999999999876 8776 7899999999999999999999999999999999999999999999999875333222
Q ss_pred CCCCCchhhhhhccceEEEEEecCCChhhHHHHHHHHhhcCCCC----------CCCchhhHHhhHHHHHHHHHHHHHhc
Q 002211 285 SKSPLSLKTAKSILGALTLRQHTPDSKRRRDFVSRWNTLSNGSI----------GLNPYGLYAYDTVWMIARALKLFLDQ 354 (953)
Q Consensus 285 ~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~F~~~~~~~~~~~~----------~~~~~~~~~YDAv~~la~Al~~~~~~ 354 (953)
... ......++.++..+.++++..++|.++|++++.... .++.+++++|||++++++|++++.+.
T Consensus 235 ~~~-----~~~~g~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~p~~~~~~~~~~~~~~aa~~YDav~~~a~Al~~a~~~ 309 (395)
T 3h6g_A 235 VEP-----YRYSGVNMTGFRILNTENTQVSSIIEKWSMERLQAPPKPDSGLLDGFMTTDAALMYDAVHVVSVAVQQFPQM 309 (395)
T ss_dssp CTT-----TTTSCCEEEEEECSCTTSHHHHHHHHHHHHC------CCSSCBCTTCCCHHHHHHHHHHHHHHHHHHTCTTC
T ss_pred hHH-----hccCccceEEEEEecCCcHHHHHHHHHHHhcccccCcccCCCcCCCccchhHHHHHhHHHHHHHHHHhhhcC
Confidence 211 111112357777888889999999999998663111 14679999999999999999987432
Q ss_pred CCcccccCCCccCCCCCCcccCCCccccCchHHHHHHHHhcccCCcceeEEEcc-CCCCCCccEEEEEeecCCeeeEEEE
Q 002211 355 GNTISFSNDTKLNGLGGGTLNLGALSIFDGGKKFLANILQTNMTGLSGPIHFNQ-DRSLLHPSYDIINVIEHGYPQQIGY 433 (953)
Q Consensus 355 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~f~G~tG~v~Fd~-~g~~~~~~y~I~~~~~~~~~~~VG~ 433 (953)
....++|...+.|.++++|+++|++++|+|++|+++||+ +|++....|+|++++++++ +.||+
T Consensus 310 ---------------~~~~~~c~~~~~~~~~~~l~~al~~~~~~G~tG~i~fd~~~G~~~~~~~~i~~~~~~~~-~~vG~ 373 (395)
T 3h6g_A 310 ---------------TVSSLQCNRHKPWRFGTRFMSLIKEAHWEGLTGRITFNKTNGLRTDFDLDVISLKEEGL-EKIGT 373 (395)
T ss_dssp ---------------CCCCCCTTSCCCCTTHHHHHHHHHHCEEEETTEEEECCTTTSEECCCCEEEEEEETTEE-EEEEE
T ss_pred ---------------CCcCCCCCCCCcCcccHHHHHHHhcCCCcCcceeeEecCCCCeecCCeEEEEEeccCCc-eEEEE
Confidence 123345777778889999999999999999999999998 9999888999999999888 99999
Q ss_pred ecCCCCccccCC
Q 002211 434 WSNYSGLSVVPP 445 (953)
Q Consensus 434 w~~~~gl~~~~~ 445 (953)
|++..|+++..+
T Consensus 374 w~~~~g~~~~~~ 385 (395)
T 3h6g_A 374 WDPASGLNMTES 385 (395)
T ss_dssp EETTTEECCCC-
T ss_pred EcCCCCccccCC
Confidence 999999876543
No 6
>4gpa_A Glutamate receptor 4; PBP fold, ligand-gated ION channel, ION transport, transmembrane AMPA receptor regulating proteins, cornichons, ckamp44; HET: NAG; 2.25A {Rattus norvegicus}
Probab=100.00 E-value=1.9e-49 Score=449.70 Aligned_cols=374 Identities=15% Similarity=0.217 Sum_probs=318.7
Q ss_pred CCceEEEeEEEecCCCchhHHHHHHHHHHHHHhcCCCCC-CCcEEEEEEecCC-CChHHHHHHHHHHHhcCcEEEEccCC
Q 002211 46 KPEVLNVGAIFSFGTVNGQVSRIAMKAAQDDINSDPRVL-GGRKLSITMHDAK-FNGFLSIMGALQFMETDTLAIVGPQS 123 (953)
Q Consensus 46 ~~~~i~IG~l~~~~~~~g~~~~~a~~lAve~iN~~g~il-~g~~l~l~~~D~~-~~~~~a~~~a~~li~~~v~aiiGp~~ 123 (953)
-+++|+||++||.+. .....|+++|||+||+++++| ++.+|.+...|++ +++..+.+.++++++++|+|||||.+
T Consensus 2 ~P~~I~IG~lf~~~~---~~~~~a~~~Av~~iN~~~~ilg~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~V~aiiG~~~ 78 (389)
T 4gpa_A 2 FPSSVQIGGLFIRNT---DQEYTAFRLAIFLHNTSPNASEAPFNLVPHVDNIETANSFAVTNAFCSQYSRGVFAIFGLYD 78 (389)
T ss_dssp CCSEEEEEEEECTTC---HHHHHHHHHHHHHHHTCSCTTTCSSEEEEEEEECSSCCHHHHHHHHHHHHHTTCSEEEECCC
T ss_pred CCCeEEEEEEEcCCC---hHHHHHHHHHHHHHHhCCCCCCCCEEEEEEEecCCCchHHHHHHHHHHHHhcCCEEEEeCCc
Confidence 468999999999875 567899999999999999998 3344544444443 58889999999999999999999999
Q ss_pred hhhHHHHHHhhhhCCCcEEEeecCCCCCCCCCCCcEEEccCChHHHHHHHHHHHHHcCCcEEEEEEecCccccchHHHHH
Q 002211 124 AVMAHVLSHLANELQVPLLSFTALDPTLSPLQYPFFVQTAPNDLYLMSAIAEMVSYFGWGEVIAIFNDDDQGRNGVTALG 203 (953)
Q Consensus 124 S~~a~av~~v~~~~~vP~Is~~at~~~ls~~~~p~~fr~~p~d~~~~~ai~~~l~~~~w~~vaii~~d~~~g~~~~~~l~ 203 (953)
|.++.+++++++.++||+++++++.+.. .+|++++|+. ++++++++++++||++|++||+++.++. ..+.+.
T Consensus 79 S~~~~~v~~i~~~~~ip~is~~~~~~~~--~~~~~~~~~~-----~~~a~~~l~~~~~w~~vaii~~~d~~~~-~~~~~~ 150 (389)
T 4gpa_A 79 KRSVHTLTSFCSALHISLITPSFPTEGE--SQFVLQLRPS-----LRGALLSLLDHYEWNCFVFLYDTDRGYS-ILQAIM 150 (389)
T ss_dssp TTTHHHHHHHHHHTTCEEEECSCCCSSC--CSSEEECSCC-----CHHHHHHHHHHTTCCEEEEEECSTTCSH-HHHHHH
T ss_pred cHHHHHHHHHHHHhCCCceecccccccc--ccCCccccCC-----HHHHHHHHHHHcCCcEEEEEEecchhhH-HHHHHH
Confidence 9999999999999999999987665433 4566666654 3468999999999999999998776664 567788
Q ss_pred HHHHhcCcEEEEEEecCCCCCCChHHHHHHHHHHhcCCceEEEEEcchhhHHHHHHHHHHcCCCCCceEEEEeCcccccc
Q 002211 204 DKLAEIRCKISYKSALPPDQSVTETDVRNELVKVRMMEARVIVVHGYSRTGLMVFDVAQRLGMMDSGYVWIATTWLSTFI 283 (953)
Q Consensus 204 ~~l~~~g~~v~~~~~~~~~~~~~~~d~~~~l~~i~~~~~~vii~~~~~~~~~~~~~~a~~~g~~~~~~~wi~~~~~~~~~ 283 (953)
+++++.|++|+....++.. ..|+..+|++++++++|+||+.+...++..++++|+++||++++|+|+.++++....
T Consensus 151 ~~~~~~g~~v~~~~~~~~~----~~d~~~~l~~i~~~~~~vIv~~~~~~~~~~il~~a~~~g~~~~~~~~i~~~~~~~~~ 226 (389)
T 4gpa_A 151 EKAGQNGWHVSAICVENFN----DVSYRQLLEELDRRQEKKFVIDCEIERLQNILEQIVSVGKHVKGYHYIIANLGFKDI 226 (389)
T ss_dssp HHHHTTTCEEEEEECTTCC----HHHHHHHHHHHHHHTCCEEEEECCHHHHHHHHHHHHHHTCSBTTCEEEECSSBGGGS
T ss_pred HHHHhcCceEEEEeecCCc----chhHHHHHHHhhccCCcEEEEEechhHHHHHHHHHHHhCCCCCceEEEEeCccccch
Confidence 9999999999998877766 899999999999999999999999999999999999999999999999999877654
Q ss_pred cCCCCCchhhhhhccceEEEEEecCCChhhHHHHHHHHhhcC-----CCCCCCchhhHHhhHHHHHHHHHHHHHhcCCcc
Q 002211 284 DSKSPLSLKTAKSILGALTLRQHTPDSKRRRDFVSRWNTLSN-----GSIGLNPYGLYAYDTVWMIARALKLFLDQGNTI 358 (953)
Q Consensus 284 ~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~F~~~~~~~~~-----~~~~~~~~~~~~YDAv~~la~Al~~~~~~~~~~ 358 (953)
.. ........|+.++..+.+..+.+++|.++|++.+. ....++.+++++||||+++|+|++++..+....
T Consensus 227 ~~-----~~~~~~~~~i~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~a~~YDAV~~~A~Al~~~~~~~~~~ 301 (389)
T 4gpa_A 227 SL-----ERFIHGGANVTGFQLVDFNTPMVTKLMDRWKKLDQREYPGSETPPKYTSALTYDGVLVMAETFRSLRRQKIDI 301 (389)
T ss_dssp CC-----HHHHHHBCEEEEEECSCTTSHHHHHHHHHHTTSCTTTSTTTTSCCCHHHHHHHHHHHHHHHHHHHHHHTTCCC
T ss_pred hh-----hhhhhcccceEEEEeecCCChHHHHHHHHHHHHhhhhcccCCCChhHHHHHHHHHHHHHHHHHHHHHhhcccc
Confidence 43 45667788999999999999999999999998764 234678899999999999999999998875543
Q ss_pred cccCCCccCCCCCCcccCCCccccCchHHHHHHHHhcccCCcceeEEEccCCCCCCccEEEEEeecCCeeeEEEEecCCC
Q 002211 359 SFSNDTKLNGLGGGTLNLGALSIFDGGKKFLANILQTNMTGLSGPIHFNQDRSLLHPSYDIINVIEHGYPQQIGYWSNYS 438 (953)
Q Consensus 359 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~f~G~tG~v~Fd~~g~~~~~~y~I~~~~~~~~~~~VG~w~~~~ 438 (953)
.. ......+.|....+|.+|.+|+++|++++|+|++|+|.||++|+|.+..|+|+|++++++ ++||+|++..
T Consensus 302 ~~-------~~~~~~~~~~~~~~~~~G~~l~~~l~~v~f~G~tG~v~Fd~~G~r~~~~~~I~~l~~~~~-~~VG~W~~~~ 373 (389)
T 4gpa_A 302 SR-------RGNAGDCLANPAAPWGQGIDMERTLKQVRIQGLTGNVQFDHYGRRVNYTMDVFELKSTGP-RKVGYWNDMD 373 (389)
T ss_dssp CC-------TTCCCCTTCSSCCCCTTHHHHHHHHHTCEEEETTEEEEBCTTSCBCSCEEEEEEEETTEE-EEEEEEETTT
T ss_pred cc-------cCCccccccCCCcccchHHHHHHHHHhCceecCceeEEECCCCCCCCCEEEEEEEECCEE-EEEEEEECCC
Confidence 21 123345567778889999999999999999999999999999999889999999999988 9999999999
Q ss_pred CccccCCcc
Q 002211 439 GLSVVPPEK 447 (953)
Q Consensus 439 gl~~~~~~~ 447 (953)
||.+..+++
T Consensus 374 gl~~~~~~t 382 (389)
T 4gpa_A 374 KLVLIQDRT 382 (389)
T ss_dssp EEEECCC--
T ss_pred CeEECCCCc
Confidence 998877644
No 7
>3hsy_A Glutamate receptor 2; ligand-gated ION channel, synapse, cell CELL membrane, endoplasmic reticulum, glycoprotein, ION TRA ionic channel; HET: NAG BMA; 1.75A {Rattus norvegicus} PDB: 3h5v_A* 3h5w_A 3o2j_A* 2wjw_A* 2wjx_A 3n6v_A
Probab=100.00 E-value=6e-50 Score=450.50 Aligned_cols=364 Identities=19% Similarity=0.304 Sum_probs=293.8
Q ss_pred ceEEEeEEEecCCCchhHHHHHHHHHHHHHhcCCCCCCCcEEEEEEecCC-CChHHHHHHHHHHHhcCcEEEEccCChhh
Q 002211 48 EVLNVGAIFSFGTVNGQVSRIAMKAAQDDINSDPRVLGGRKLSITMHDAK-FNGFLSIMGALQFMETDTLAIVGPQSAVM 126 (953)
Q Consensus 48 ~~i~IG~l~~~~~~~g~~~~~a~~lAve~iN~~g~il~g~~l~l~~~D~~-~~~~~a~~~a~~li~~~v~aiiGp~~S~~ 126 (953)
.+|+||+++|++. ...+.|+++|+||||++ |++|++++.|++ +||..+++++++|++++|.+||||.+|..
T Consensus 1 ~~i~IG~i~~~sg---~~~~~~~~lAv~~iN~~-----g~~l~~~~~d~~~~d~~~a~~~~~~li~~~V~aiiG~~~S~~ 72 (376)
T 3hsy_A 1 NSIQIGGLFPRGA---DQEYSAFRVGMVQFSTS-----EFRLTPHIDNLEVANSFAVTNAFCSQFSRGVYAIFGFYDKKS 72 (376)
T ss_dssp CEEEEEEEEETTC---HHHHHHHHHHHHHTCCS-----SCEEEEEEEEECTTCHHHHHHHHHHHHHTTCSEEEECCCTTT
T ss_pred CceeEEEEeCCCC---HHHHHHHHHHHHHHhcC-----CeEEEEEEeecCCCChHHHHHHHHHHHhcCcEEEECCCchhH
Confidence 3699999999986 36799999999999998 689999999965 49999999999999999999999999999
Q ss_pred HHHHHHhhhhCCCcEEEeecCCCCCCCCCCCcEEEccCChHHHHHHHHHHHHHcCCcEEEEEEecCccccchHHHHHHHH
Q 002211 127 AHVLSHLANELQVPLLSFTALDPTLSPLQYPFFVQTAPNDLYLMSAIAEMVSYFGWGEVIAIFNDDDQGRNGVTALGDKL 206 (953)
Q Consensus 127 a~av~~v~~~~~vP~Is~~at~~~ls~~~~p~~fr~~p~d~~~~~ai~~~l~~~~w~~vaii~~d~~~g~~~~~~l~~~l 206 (953)
+.++++++++++||+|+++++ . ....+|+||+.|+ |+.+++++++++||++|++|| |++||....+.|.+++
T Consensus 73 ~~av~~~~~~~~ip~is~~~~--~--~~~~~~~~~~~p~---~~~a~~~~~~~~gw~~vaii~-d~~~g~~~~~~~~~~~ 144 (376)
T 3hsy_A 73 VNTITSFCGTLHVSFITPSFP--T--DGTHPFVIQMRPD---LKGALLSLIEYYQWDKFAYLY-DSDRGLSTLQAVLDSA 144 (376)
T ss_dssp HHHHHHHHHHHTCEEEECSCC--C--CSCCTTEEECSCC---CHHHHHHHHHHTTCCEEEEEE-CSTTCSHHHHHHHHHH
T ss_pred HHHHHHHhccCcCceeecCCC--C--cccCCceEEeCcc---HHHHHHHHHHhcCCCEEEEEE-eCchhHHHHHHHHHHh
Confidence 999999999999999998763 2 2356899999876 899999999999999999999 8999999999999999
Q ss_pred HhcCcEEEEEEecCCCCCCChHHHHHHHHHHhcCCceEEEEEcchhhHHHHHHHHHHcCCCCCceEEEEeCcccccccCC
Q 002211 207 AEIRCKISYKSALPPDQSVTETDVRNELVKVRMMEARVIVVHGYSRTGLMVFDVAQRLGMMDSGYVWIATTWLSTFIDSK 286 (953)
Q Consensus 207 ~~~g~~v~~~~~~~~~~~~~~~d~~~~l~~i~~~~~~vii~~~~~~~~~~~~~~a~~~g~~~~~~~wi~~~~~~~~~~~~ 286 (953)
++.|++|+....++.....++.|+..+|++|++++||+||+++.+.++..+++|++++||+.++|+||.+++.....+.
T Consensus 145 ~~~g~~v~~~~~~~~~~~~~~~d~~~~l~~i~~~~~~vii~~~~~~~~~~~~~qa~~~g~~~~~~~~i~~~~~~~~~~~- 223 (376)
T 3hsy_A 145 AEKKWQVTAINVGNINNDKKDETYRSLFQDLELKKERRVILDCERDKVNDIVDQVITIGKHVKGYHYIIANLGFTDGDL- 223 (376)
T ss_dssp HHHTCEEEEEECTTCC--------------------CEEEEESCHHHHHHHHHHHHHHTSSGGGCEEEECSSBTTSTTG-
T ss_pred hhcCCeEEEEEeccccccccchhHHHHHHHHhhCCCeEEEEECCHHHHHHHHHHHHHcccCCCCcEEEEcCCCccccch-
Confidence 9999999988766532001368999999999999999999999999999999999999999999999999853322221
Q ss_pred CCCchhhhhhccceEEEEEecCCChhhHHHHHHHHhhcCCC------CCCCchhhHHhhHHHHHHHHHHHHHhcCCcccc
Q 002211 287 SPLSLKTAKSILGALTLRQHTPDSKRRRDFVSRWNTLSNGS------IGLNPYGLYAYDTVWMIARALKLFLDQGNTISF 360 (953)
Q Consensus 287 ~~~~~~~~~~~~g~~~~~~~~~~~~~~~~F~~~~~~~~~~~------~~~~~~~~~~YDAv~~la~Al~~~~~~~~~~~~ 360 (953)
.+......+++++.++.+++|..++|+++|+++|+.. ..|+.+++++||||+++|+|++++.+++.....
T Consensus 224 ----~~~~~~~~~~~~~~~~~~~~~~~~~F~~~~~~~~~~~~~~~~~~~~~~~aa~~YDav~~la~Ai~~~~~~~~~~~~ 299 (376)
T 3hsy_A 224 ----LKIQFGGANVSGFQIVDYDDSLVSKFIERWSTLEEKEYPGAHTATIKYTSALTYDAVQVMTEAFRNLRKQRIEISR 299 (376)
T ss_dssp ----GGSCCTTCEEEEEESCCTTSHHHHHHHHHHTTSCTTTSTTCSCSSCCHHHHHHHHHHHHHHHHHHHHHHTTCCCSC
T ss_pred ----HHhhcCCcCceEEEEecCCchHHHHHHHHHHhccccccCCCCCcccchhHHHHHHHHHHHHHHHHHHHhcCCcccc
Confidence 1122233458888888889999999999999988632 147889999999999999999999875433211
Q ss_pred cCCCccCCCCCCcccC--CCccccCchHHHHHHHHhcccCCcceeEEEccCCCCCCccEEEEEeecCCeeeEEEEecCCC
Q 002211 361 SNDTKLNGLGGGTLNL--GALSIFDGGKKFLANILQTNMTGLSGPIHFNQDRSLLHPSYDIINVIEHGYPQQIGYWSNYS 438 (953)
Q Consensus 361 ~~~~~~~~~~~~~~~~--~~~~~~~~~~~l~~~l~~~~f~G~tG~v~Fd~~g~~~~~~y~I~~~~~~~~~~~VG~w~~~~ 438 (953)
.+....| +...+|.+|.+|+++|++++|+|++|+++||++|++....|+|+++.+++. ++||+|++.+
T Consensus 300 ---------~~~~~~~~~~~~~~~~~g~~l~~~l~~~~f~G~tG~i~fd~~G~~~~~~~~i~~~~~~g~-~~VG~w~~~~ 369 (376)
T 3hsy_A 300 ---------RGNAGDCLANPAVPWGQGVEIERALKQVQVEGLSGNIKFDQNGKRINYTINIMELKTNGP-RKIGYWSEVD 369 (376)
T ss_dssp ---------CCCCCCTTCSSCCCCHHHHHHHHHHHHCCEEETTEEECBCTTSBBCSCEEEEEEEETTEE-EEEEEEETTT
T ss_pred ---------CCCCCccCCCCCCCcCCcHHHHHHHHhcCcCCCccceeECCCCCCccceEEEEEecCCCc-eEEEEEcCCC
Confidence 1112234 455667889999999999999999999999999999899999999998888 9999999999
Q ss_pred Cccc
Q 002211 439 GLSV 442 (953)
Q Consensus 439 gl~~ 442 (953)
||+.
T Consensus 370 g~~~ 373 (376)
T 3hsy_A 370 KMVV 373 (376)
T ss_dssp EEEE
T ss_pred Ccee
Confidence 8764
No 8
>1jdp_A NPR-C, atrial natriuretic peptide clearance receptor; hormone-receptor complex, natriuretic peptide receptor, ALLO activation, signaling protein; HET: NDG NAG; 2.00A {Homo sapiens} SCOP: c.93.1.1 PDB: 1jdn_A* 1yk0_A* 1yk1_A*
Probab=100.00 E-value=6.3e-49 Score=452.73 Aligned_cols=363 Identities=16% Similarity=0.235 Sum_probs=304.5
Q ss_pred CCceEEEeEEEecCC---CchhHHHHHHHHHHHHHhcCCC----CCCCcEEEEEEecCCCChHHHHHHHHHHHh---c-C
Q 002211 46 KPEVLNVGAIFSFGT---VNGQVSRIAMKAAQDDINSDPR----VLGGRKLSITMHDAKFNGFLSIMGALQFME---T-D 114 (953)
Q Consensus 46 ~~~~i~IG~l~~~~~---~~g~~~~~a~~lAve~iN~~g~----il~g~~l~l~~~D~~~~~~~a~~~a~~li~---~-~ 114 (953)
.+++|+||+++|++. ..|.....|+++|+|+||++|+ +|+|++|+++++|++|++. |+..+.+++. + +
T Consensus 6 ~~~~i~IG~~~p~sg~~~~~g~~~~~a~~~Av~eiN~~~~~~~~ll~g~~l~~~~~D~~~~~~-a~~~~~~~~~~~~~~~ 84 (441)
T 1jdp_A 6 PPQKIEVLVLLPQDDSYLFSLTRVRPAIEYALRSVEGNGTGRRLLPPGTRFQVAYEDSDCGNR-ALFSLVDRVAAARGAK 84 (441)
T ss_dssp CCCEEEEEEEECSSTTSTTCHHHHHHHHHHHHHHHCC-----CCSCTTCEEEEEEEECTTSTH-HHHHHHHHHHHTTTCC
T ss_pred CCCceEEEEEcCCCCCcccchhhhHHHHHHHHHHHHhCCCcccccCCCcEEEEEEecCCCchh-HHHHHHHHHHhhccCC
Confidence 457899999999974 3467788999999999999998 8899999999999999998 7766665542 3 8
Q ss_pred cEEEEccCChhhHHHHHHhhhhCCCcEEEeecCCCCCCC-C-CCCcEEEccCChHHHHHHHHHHHHHcCCcEEEEEEecC
Q 002211 115 TLAIVGPQSAVMAHVLSHLANELQVPLLSFTALDPTLSP-L-QYPFFVQTAPNDLYLMSAIAEMVSYFGWGEVIAIFNDD 192 (953)
Q Consensus 115 v~aiiGp~~S~~a~av~~v~~~~~vP~Is~~at~~~ls~-~-~~p~~fr~~p~d~~~~~ai~~~l~~~~w~~vaii~~d~ 192 (953)
|.+||||.+|..+.+++++++.+++|+|++++++|.+++ . +||||||+.|++..|+.+++++++++||++|++|++|+
T Consensus 85 v~aiiG~~~S~~~~~v~~~~~~~~ip~is~~~~~~~ls~~~~~~~~~fr~~p~~~~~~~a~~~~~~~~~w~~v~ii~~d~ 164 (441)
T 1jdp_A 85 PDLILGPVCEYAAAPVARLASHWDLPMLSAGALAAGFQHKDSEYSHLTRVAPAYAKMGEMMLALFRHHHWSRAALVYSDD 164 (441)
T ss_dssp CSEEECCCSHHHHHHHHHHHHHHTCCEEESCCCSGGGGCTTTTTTTEEECSCCHHHHHHHHHHHHHHHTCCEEEEEEECC
T ss_pred ceEEECCCchhhHHHHHHHHhhcCCcEEcCCCCchhhccccccCCceEEecCcHHHHHHHHHHHHHhcCCcEEEEEEEcC
Confidence 999999999999999999999999999999999999998 4 79999999999999999999999999999999999999
Q ss_pred ccccc---hHHHHHHHHHhcCcEEEEEEecCCCCCCChHHHHHHHHHHhcCCceEEEEEcchhhHHHHHHHHHHcCCCCC
Q 002211 193 DQGRN---GVTALGDKLAEIRCKISYKSALPPDQSVTETDVRNELVKVRMMEARVIVVHGYSRTGLMVFDVAQRLGMMDS 269 (953)
Q Consensus 193 ~~g~~---~~~~l~~~l~~~g~~v~~~~~~~~~~~~~~~d~~~~l~~i~~~~~~vii~~~~~~~~~~~~~~a~~~g~~~~ 269 (953)
+||+. ..+.|++++++.|+||+..+.++.+ ..|+...+++|+ +++|||++++...++..++++++++||..+
T Consensus 165 ~~g~~~~~~~~~~~~~~~~~g~~v~~~~~~~~~----~~d~~~~l~~i~-~~~~vii~~~~~~~~~~~~~~~~~~gl~~~ 239 (441)
T 1jdp_A 165 KLERNCYFTLEGVHEVFQEEGLHTSIYSFDETK----DLDLEDIVRNIQ-ASERVVIMCASSDTIRSIMLVAHRHGMTSG 239 (441)
T ss_dssp SSSCHHHHHHHHHHHHHHHHTCEEEEEEECTTS----CCCHHHHHHHHH-HHCSEEEEESCHHHHHHHHHHHHHTTCTTT
T ss_pred CcccchHHHHHHHHHHHHhcCcEEEEEEecCCc----ccCHHHHHHHhh-cCCcEEEEecCHHHHHHHHHHHHHcCCCCC
Confidence 99999 9999999999999999988777654 457899999999 999999999999999999999999999888
Q ss_pred ceEEEEeCcccc------cccCCCCCchhhhhhccceEEEEEecCCChhhHHHHHHHHhh-----cCCCCCCCchhhHHh
Q 002211 270 GYVWIATTWLST------FIDSKSPLSLKTAKSILGALTLRQHTPDSKRRRDFVSRWNTL-----SNGSIGLNPYGLYAY 338 (953)
Q Consensus 270 ~~~wi~~~~~~~------~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~F~~~~~~~-----~~~~~~~~~~~~~~Y 338 (953)
.|+||.+++... .+..............+++.++..+.+..|.+++|.++|+++ |+....++.+++++|
T Consensus 240 ~~v~i~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~g~~~~~~~~p~~~~F~~~~~~~~~~~~~~~~~~~~~~~~~~Y 319 (441)
T 1jdp_A 240 DYAFFNIELFNSSSYGDGSWKRGDKHDFEAKQAYSSLQTVTLLRTVKPEFEKFSMEVKSSVEKQGLNMEDYVNMFVEGFH 319 (441)
T ss_dssp TCEEEEECSSCCCSTTTCTTCCSSTTHHHHHHHGGGEEEEEECCCCCHHHHHHHHHHHHHHHTTTCCCCSSCCHHHHHHH
T ss_pred CEEEEEEeccccccccCCCCccCCcccHHHHHHHHhheEEeecCCCCchHHHHHHHHHHHHhhCCCCccchhhhHHHHHH
Confidence 899999884321 111111111111234566777777778899999999999876 442223567889999
Q ss_pred hHHHHHHHHHHHHHhcCCcccccCCCccCCCCCCcccCCCccccCchHHHHHHHHhcccCCcceeEEEccCCCCCCccEE
Q 002211 339 DTVWMIARALKLFLDQGNTISFSNDTKLNGLGGGTLNLGALSIFDGGKKFLANILQTNMTGLSGPIHFNQDRSLLHPSYD 418 (953)
Q Consensus 339 DAv~~la~Al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~f~G~tG~v~Fd~~g~~~~~~y~ 418 (953)
|||+++|+|++++..++.. +.++++|+++|++++|+|++|++.||++|++ ...|+
T Consensus 320 dAv~~~A~Al~~~~~~~~~------------------------~~~~~~l~~~l~~~~f~g~~G~v~fd~~Gd~-~~~~~ 374 (441)
T 1jdp_A 320 DAILLYVLALHEVLRAGYS------------------------KKDGGKIIQQTWNRTFEGIAGQVSIDANGDR-YGDFS 374 (441)
T ss_dssp HHHHHHHHHHHHHHHTTCC------------------------TTCHHHHHHHHSSEEEEETTEEEEECTTSBB-CCEEE
T ss_pred HHHHHHHHHHHHHHHhCCC------------------------CCCHHHHHHHHhCCeeECCccceEECCCCCc-cccEE
Confidence 9999999999998654210 1258999999999999999999999999996 58999
Q ss_pred EEEeec--CCeeeEEEEecCCCC
Q 002211 419 IINVIE--HGYPQQIGYWSNYSG 439 (953)
Q Consensus 419 I~~~~~--~~~~~~VG~w~~~~g 439 (953)
|++++. +|.+++||.|++..+
T Consensus 375 I~~~~~~~~g~~~~VG~~~~~~~ 397 (441)
T 1jdp_A 375 VIAMTDVEAGTQEVIGDYFGKEG 397 (441)
T ss_dssp EEEEEETTTTEEEEEEEEETTTT
T ss_pred EEecccCCCCceEEEEEEcCCCC
Confidence 999973 455699999998764
No 9
>3saj_A Glutamate receptor 1; rossman fold, ION channel, membrane, transport protein; HET: NAG BMA MAN; 2.50A {Rattus norvegicus}
Probab=100.00 E-value=3.4e-49 Score=445.87 Aligned_cols=367 Identities=19% Similarity=0.254 Sum_probs=315.7
Q ss_pred CCCceEEEeEEEecCCCchhHHHHHHHHHHHHHhcCCCCCCCcEEEEEEecCCC-ChHHHHHHHHHHHhcCcEEEEccCC
Q 002211 45 LKPEVLNVGAIFSFGTVNGQVSRIAMKAAQDDINSDPRVLGGRKLSITMHDAKF-NGFLSIMGALQFMETDTLAIVGPQS 123 (953)
Q Consensus 45 ~~~~~i~IG~l~~~~~~~g~~~~~a~~lAve~iN~~g~il~g~~l~l~~~D~~~-~~~~a~~~a~~li~~~v~aiiGp~~ 123 (953)
..+++|+||+++|++.. ..+.|+++|+|+||++| +|++++.|+++ ||..++.++++|++++|.+||||.+
T Consensus 6 ~~~~~ikIG~~~~~sg~---~~~~a~~lAv~~iN~~g------~l~~~~~D~~~~d~~~a~~~~~~l~~~~V~aiiG~~~ 76 (384)
T 3saj_A 6 AMPNNIQIGGLFPNQQS---QEHAAFRFALSQLTEPP------KLLPQIDIVNISDSFEMTYRFCSQFSKGVYAIFGFYE 76 (384)
T ss_dssp CCCSEEEEEEEESCSSS---HHHHHHHHHHTTCCSSS------EEEEEEEECCTTCHHHHHHHHHHHHHTTCSCEEECCC
T ss_pred CCCcceeEEEEecCCCH---HHHHHHHHHHHHHhcCC------ccceeeEecccCchhhHHHHHHHHHhcCeEEEECCCC
Confidence 45789999999999876 78999999999999985 89999999987 9999999999999999999999999
Q ss_pred hhhHHHHHHhhhhCCCcEEEeecCCCCCCCCCCCcEEEccCChHHHHHHHHHHHHHcCCcEEEEEEecCccccchHHHHH
Q 002211 124 AVMAHVLSHLANELQVPLLSFTALDPTLSPLQYPFFVQTAPNDLYLMSAIAEMVSYFGWGEVIAIFNDDDQGRNGVTALG 203 (953)
Q Consensus 124 S~~a~av~~v~~~~~vP~Is~~at~~~ls~~~~p~~fr~~p~d~~~~~ai~~~l~~~~w~~vaii~~d~~~g~~~~~~l~ 203 (953)
|.++.++++++++++||+|+++ +|.++ ..+|+||+.|+ |+.+++++++++||++|++|| |++||+...+.|.
T Consensus 77 S~~~~a~~~~~~~~~iP~is~~--~~~~~--~~~~~~~~~p~---~~~a~~~~~~~~g~~~v~ii~-d~~~g~~~~~~~~ 148 (384)
T 3saj_A 77 RRTVNMLTSFCGALHVCFITPS--FPVDT--SNQFVLQLRPE---LQEALISIIDHYKWQTFVYIY-DADRGLSVLQRVL 148 (384)
T ss_dssp HHHHHHHHHHHHHHTCCEEECS--CCCSS--CCTTEEECSCC---CHHHHHHHHHHTTCCEEEEEE-CSTTCSHHHHHHH
T ss_pred HHHHHHHHHHhccCCCCeEecc--ccCcC--ccCceEEeccc---HHHHHHHHHHHCCCcEEEEEE-eCchhHHHHHHHH
Confidence 9999999999999999999984 45443 45678888877 899999999999999999999 7799999999999
Q ss_pred HHHHhcCcEEEEEEecCCCCCCChHHHHHHHHHHhcCCceEEEEEcchhhHHHHHHHHHHcCCCCCceEEEEeCcccccc
Q 002211 204 DKLAEIRCKISYKSALPPDQSVTETDVRNELVKVRMMEARVIVVHGYSRTGLMVFDVAQRLGMMDSGYVWIATTWLSTFI 283 (953)
Q Consensus 204 ~~l~~~g~~v~~~~~~~~~~~~~~~d~~~~l~~i~~~~~~vii~~~~~~~~~~~~~~a~~~g~~~~~~~wi~~~~~~~~~ 283 (953)
+.+++.|+||+..+.++.+ +.|+..+|.+|+++++|+|++++.+.++..+++|++++||+.++|+||+++......
T Consensus 149 ~~~~~~g~~v~~~~~~~~~----~~d~~~~l~~ik~~~~~vii~~~~~~~~~~~~~qa~~~g~~~~~~~~i~~~~~~~~~ 224 (384)
T 3saj_A 149 DTAAEKNWQVTAVNILTTT----EEGYRMLFQDLEKKKERLVVVDCESERLNAILGQIVKLEKNGIGYHYILANLGFMDI 224 (384)
T ss_dssp HHHHHHTCEEEEEEGGGCC----HHHHHHTTTTCCSCSEEEEEEECCGGGHHHHHHHHHHTCCTTCEEEEEESSSCGGGS
T ss_pred HHhhhcCceEEEEEeccCC----chhHHHHHHHHhccCCcEEEEEcCHHHHHHHHHHHHHcCCCCCCcEEEEECCCcccc
Confidence 9999999999998865555 889999999999999999999999999999999999999999999999998543322
Q ss_pred cCCCCCchhhhhhccceEEEEEecCCChhhHHHHHHHHhhcCCC------CCCCchhhHHhhHHHHHHHHHHHHHhcCCc
Q 002211 284 DSKSPLSLKTAKSILGALTLRQHTPDSKRRRDFVSRWNTLSNGS------IGLNPYGLYAYDTVWMIARALKLFLDQGNT 357 (953)
Q Consensus 284 ~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~F~~~~~~~~~~~------~~~~~~~~~~YDAv~~la~Al~~~~~~~~~ 357 (953)
+. ........|++++.++.+++|.+++|.++|+++++.. ..++.+++++|||++++++|++++++.+..
T Consensus 225 ~~-----~~~~~~~~~v~~~~~~~~~~~~~~~F~~~~~~~~~~~~p~~~~~~~~~~aa~~YDav~~~a~Al~~~~~~~~~ 299 (384)
T 3saj_A 225 DL-----NKFKESGANVTGFQLVNYTDTIPARIMQQWRTSDSRDHTRVDWKRPKYTSALTYDGVKVMAEAFQSLRRQRID 299 (384)
T ss_dssp CH-----HHHHHTTCCEEEEECCCTTSHHHHHHHHHHHHHHHHC------CCCCHHHHHHHHHHHHHHHHHHHHHHTTCC
T ss_pred cH-----HHhhCCCcceEEEEeecCCChHHHHHHHHHHhcCccccCCCCCCccchhHHHHHHHHHHHHHHHHHHHhhccc
Confidence 21 2344556789999999999999999999999987521 135778999999999999999999875443
Q ss_pred ccccCCCccCCCCCCcccCCCc--cccCchHHHHHHHHhcccCCcceeEEEccCCCCCCccEEEEEeecCCeeeEEEEec
Q 002211 358 ISFSNDTKLNGLGGGTLNLGAL--SIFDGGKKFLANILQTNMTGLSGPIHFNQDRSLLHPSYDIINVIEHGYPQQIGYWS 435 (953)
Q Consensus 358 ~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~l~~~l~~~~f~G~tG~v~Fd~~g~~~~~~y~I~~~~~~~~~~~VG~w~ 435 (953)
... .+....|... .+|.+|.+|+++|++++|+|++|+++||++|++....|+|+++++++. ++||+|+
T Consensus 300 ~~~---------~~~~~~c~~~~~~~~~~g~~l~~~l~~~~f~G~tG~i~fd~~G~~~~~~~~i~~~~~~g~-~~VG~W~ 369 (384)
T 3saj_A 300 ISR---------RGNAGDCLANPAVPWGQGIDIQRALQQVRFEGLTGNVQFNEKGRRTNYTLHVIEMKHDGI-RKIGYWN 369 (384)
T ss_dssp CCC---------CCSCCCSCCBSCCCCTTHHHHHHHHHSCCEEETTEEECBCTTSBBCSCCEEEEEEETTEE-EEEEEEE
T ss_pred eec---------CCCCCCCCCCCCCCcCCcHHHHHHHHhCcCcccceeeEeCCCCCcccceEEEEEeccCCc-ceeEEEc
Confidence 221 1122244433 456789999999999999999999999999999899999999999988 9999999
Q ss_pred CCCCccccCCcc
Q 002211 436 NYSGLSVVPPEK 447 (953)
Q Consensus 436 ~~~gl~~~~~~~ 447 (953)
+..|+++.+++.
T Consensus 370 ~~~gl~~~~~~~ 381 (384)
T 3saj_A 370 EDDKFVPAALEV 381 (384)
T ss_dssp TTTEEEECCC--
T ss_pred CCCCccccCccc
Confidence 999988766543
No 10
>2e4u_A Metabotropic glutamate receptor 3; G-protein-coupled receptor, neuron, central nerve system, SI protein; HET: NAG GLU; 2.35A {Rattus norvegicus} PDB: 2e4v_A* 2e4w_A* 2e4x_A* 2e4y_A*
Probab=100.00 E-value=2.6e-48 Score=459.17 Aligned_cols=390 Identities=21% Similarity=0.313 Sum_probs=324.5
Q ss_pred CCCceEEEeEEEecC-------------CCchhHHHHHHHHHHHHHhcCCCCCCCcEEEEEEecCCCChHHHHHHHHHHH
Q 002211 45 LKPEVLNVGAIFSFG-------------TVNGQVSRIAMKAAQDDINSDPRVLGGRKLSITMHDAKFNGFLSIMGALQFM 111 (953)
Q Consensus 45 ~~~~~i~IG~l~~~~-------------~~~g~~~~~a~~lAve~iN~~g~il~g~~l~l~~~D~~~~~~~a~~~a~~li 111 (953)
..+++|+||+++|++ +..|.....|+++|+||||+++++|||++|+++++|+++++..|++++.+++
T Consensus 10 ~~~g~i~IG~l~pl~g~~~~~~~C~~~~~~~g~~~~~a~~~AieeIN~~~~llpg~~L~~~i~D~~~~~~~a~~~a~~~l 89 (555)
T 2e4u_A 10 KIEGDLVLGGLFPINEKGTGTEECGRINEDRGIQRLEAMLFAIDEINKDNYLLPGVKLGVHILDTCSRDTYALEQSLEFV 89 (555)
T ss_dssp EECCSEEEEEEECCEEECCTTCSEEEECTTTTHHHHHHHHHHHHHHHHCTTSSTTCCEEEEEEECTTCHHHHHHHHHHHH
T ss_pred ecCCCEEEEEEEEeeECCCCCCccccccchhhhHHHHHHHHHHHHHhCCCCCCCCCeEEEEEEECCCChHHHHHHHHHHH
Confidence 356799999999997 2458888999999999999999999999999999999999999999999888
Q ss_pred h-------------------------cCcEEEEccCChhhHHHHHHhhhhCCCcEEEeecCCCCCCC-CCCCcEEEccCC
Q 002211 112 E-------------------------TDTLAIVGPQSAVMAHVLSHLANELQVPLLSFTALDPTLSP-LQYPFFVQTAPN 165 (953)
Q Consensus 112 ~-------------------------~~v~aiiGp~~S~~a~av~~v~~~~~vP~Is~~at~~~ls~-~~~p~~fr~~p~ 165 (953)
+ ++|+|||||.+|..+.+++++++.+++|+|+++++++.|++ .+||||||+.|+
T Consensus 90 ~~~~~~~~~~ny~C~~~~~~~~~~~~~~v~aviG~~~S~~s~~va~~~~~~~iP~Is~~a~~~~lsd~~~~p~~fr~~p~ 169 (555)
T 2e4u_A 90 RASLTKVDEAEYMCPDGSYAIQENIPLLIAGVIGGSYSSVSIQVANLLRLFQIPQISYASTSAKLSDKSRYDYFARTVPP 169 (555)
T ss_dssp HTTC--------------------CCCCEEEEEECSSHHHHHHHHHHHGGGTCCEEESSCCCGGGGCTTTCTTEEESSCC
T ss_pred hCcCcccCCCCcccCCCccccccccCCceEEEECCCCcHHHHHHHHHHhCcCCceEeCCcCCCccCCcccCCCceeeCCC
Confidence 4 47999999999999999999999999999999999999998 579999999999
Q ss_pred hHHHHHHHHHHHHHcCCcEEEEEEecCccccchHHHHHHHHHhcCcEEEEEEecCCCCCCChHHHHHHHHHHhc-CCceE
Q 002211 166 DLYLMSAIAEMVSYFGWGEVIAIFNDDDQGRNGVTALGDKLAEIRCKISYKSALPPDQSVTETDVRNELVKVRM-MEARV 244 (953)
Q Consensus 166 d~~~~~ai~~~l~~~~w~~vaii~~d~~~g~~~~~~l~~~l~~~g~~v~~~~~~~~~~~~~~~d~~~~l~~i~~-~~~~v 244 (953)
|..|+.+++++++++||+||++|++|++||+...+.|++++++.|+||++.+.++.. .+..|+...+.+|++ +++||
T Consensus 170 d~~~~~a~~~ll~~fgw~~V~ii~~d~~~g~~~~~~~~~~~~~~gi~v~~~~~~~~~--~~~~~~~~~l~~i~~~s~a~v 247 (555)
T 2e4u_A 170 DFYQAKAMAEILRFFNWTYVSTVASEGDYGETGIEAFEQEARLRNICIATAEKVGRS--NIRKSYDSVIRELLQKPNARV 247 (555)
T ss_dssp HHHHHHHHHHHHHHTTCCEEEEEEESSTTHHHHHHHHHHHHHTTTCEEEEEEEECTT--CCHHHHHHHHHHHHTCTTCCE
T ss_pred hHHHHHHHHHHHHHcCCeEEEEEEeeChHHHHHHHHHHHHHHHCCccEEEEEEeCCC--CChHHHHHHHHHHhccCCCCE
Confidence 999999999999999999999999999999999999999999999999999989863 347899999999964 79999
Q ss_pred EEEEcchhhHHHHHHHHHHcCCCCCceEEEEeCcccccccCCCCCchhhhhhccceEEEEEecCCChhhHHHH-------
Q 002211 245 IVVHGYSRTGLMVFDVAQRLGMMDSGYVWIATTWLSTFIDSKSPLSLKTAKSILGALTLRQHTPDSKRRRDFV------- 317 (953)
Q Consensus 245 ii~~~~~~~~~~~~~~a~~~g~~~~~~~wi~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~F~------- 317 (953)
||+++...++..++++++++|+ +++||++++|....... ....+.++|++++.++..+.|++++|+
T Consensus 248 Ii~~~~~~~~~~~~~~~~~~g~---~~~~i~s~~~~~~~~~~----~~~~~~~~G~l~~~~~~~~ipgf~~f~~~~~p~~ 320 (555)
T 2e4u_A 248 VVLFMRSDDSRELIAAANRVNA---SFTWVASDGWGAQESIV----KGSEHVAYGAITLELASHPVRQFDRYFQSLNPYN 320 (555)
T ss_dssp EEEECCHHHHHHHHHHHHHTTC---CCEEEECTTTTTCGGGT----TTCHHHHTTCEEEEECCCCCHHHHHHHHTCCTTT
T ss_pred EEEEcCHHHHHHHHHHHHHhcC---CeEEEEeccccccchhh----ccchhhcceEEEEEeccCCCCcHHHHHhhCCccc
Confidence 9999999999999999999987 68999999876543221 112456899999998876666665543
Q ss_pred --------HHHHhhcCCCC---------------------CCCchhhHHhhHHHHHHHHHHHHHhcCCcccccCCCccCC
Q 002211 318 --------SRWNTLSNGSI---------------------GLNPYGLYAYDTVWMIARALKLFLDQGNTISFSNDTKLNG 368 (953)
Q Consensus 318 --------~~~~~~~~~~~---------------------~~~~~~~~~YDAv~~la~Al~~~~~~~~~~~~~~~~~~~~ 368 (953)
+.|+++|++.. .+..+++.+||||+++|+||+++..+....
T Consensus 321 ~p~~~~~~~~w~~~f~c~~~~~~~~~~~C~~~e~l~~~~~~~~~~~~~~YdAVya~A~AL~~~~~~~~~~---------- 390 (555)
T 2e4u_A 321 NHRNPWFRDFWEQKFQCSLQNKRNHRQVCDKHLAIDSSNYEQESKIMFVVNAVYAMAHALHKMQRTLCPQ---------- 390 (555)
T ss_dssp CTTCTTHHHHHHHHTTCCCC------CCCCTTCCCCTTTCCCCTTHHHHHHHHHHHHHHHHHHHHHHCTT----------
T ss_pred CCCCHHHHHHHHHHcCCCCCCCCccCCCCCCccccccccccccccchhhHHHHHHHHHHHHHHHhhhcCC----------
Confidence 45777776321 145678899999999999999986531100
Q ss_pred CCCCcccCCCccccCchHHHHH-HHHhcccC------Cccee-EEEccCCCCCCccEEEEEeec---CCeeeEEEEecCC
Q 002211 369 LGGGTLNLGALSIFDGGKKFLA-NILQTNMT------GLSGP-IHFNQDRSLLHPSYDIINVIE---HGYPQQIGYWSNY 437 (953)
Q Consensus 369 ~~~~~~~~~~~~~~~~~~~l~~-~l~~~~f~------G~tG~-v~Fd~~g~~~~~~y~I~~~~~---~~~~~~VG~w~~~ 437 (953)
....|...... ++++|++ +|++++|+ |++|+ +.||++|++ ...|+|+|++. +..+++||.|++
T Consensus 391 ---~~~~~~~~~~~-~~~~l~~~~L~~v~f~~~~~~~g~~G~~v~fd~~Gd~-~~~y~I~~~~~~~g~~~~~~VG~~~~- 464 (555)
T 2e4u_A 391 ---TTKLCDAMKIL-DGKKLYKEYLLKIQFTAPFNPNKGADSIVKFDTFGDG-MGRYNVFNLQQTGGKYSYLKVGHWAE- 464 (555)
T ss_dssp ---CSSCCGGGTSC-CHHHHHHHHTTCEEECCSSSCCSSSCCEEECCTTSCC-CCCEEEEEEECTTSSCEEEEEEEESS-
T ss_pred ---CCccccccCCC-CcccccHHhHhceeecccccccCCCCCeEEEcCCCCc-cceEEEEEEEecCCcEEEEEEEEecc-
Confidence 00112222223 5889999 99999999 99998 999999996 68999999962 224599999984
Q ss_pred CCccccCCcccccCCCCCCCCCCcceeeEeCCCcccCCCcccc
Q 002211 438 SGLSVVPPEKLYRKPANRSSSNQHLYSVVWPGGVTSKPRGWVF 480 (953)
Q Consensus 438 ~gl~~~~~~~~~~~~~~~~~~~~~l~~i~Wpg~~~~~P~~~~~ 480 (953)
.|. .+...|.|++ .++|++.|-
T Consensus 465 -~l~------------------i~~~~I~W~~--~~~P~S~CS 486 (555)
T 2e4u_A 465 -TLS------------------LDVDSIHWSR--NSVPTSQCS 486 (555)
T ss_dssp -SEE------------------CCGGGCCCTT--SSCCCCCSS
T ss_pred -eEE------------------EeccccccCC--CCCcceeeC
Confidence 332 2235689988 578998873
No 11
>3sm9_A Mglur3, metabotropic glutamate receptor 3; structural genomics, structural genomics consortium, SGC, CE membrane, G-protein coupled receptor; HET: Z99; 2.26A {Homo sapiens}
Probab=100.00 E-value=1.1e-48 Score=452.21 Aligned_cols=367 Identities=20% Similarity=0.316 Sum_probs=309.8
Q ss_pred CCCceEEEeEEEecC------------C-CchhHHHHHHHHHHHHHhcCCCCCCCcEEEEEEecCCCChHHHHHHHHHHH
Q 002211 45 LKPEVLNVGAIFSFG------------T-VNGQVSRIAMKAAQDDINSDPRVLGGRKLSITMHDAKFNGFLSIMGALQFM 111 (953)
Q Consensus 45 ~~~~~i~IG~l~~~~------------~-~~g~~~~~a~~lAve~iN~~g~il~g~~l~l~~~D~~~~~~~a~~~a~~li 111 (953)
..+++|.||++||++ . ..|.....|+++|+||||+++++|||++|+++++|+|+++..|++++.+|+
T Consensus 9 ~~~GDi~iGglf~l~~~~~~~~~C~~~~~~~g~~~~~a~~~AieeIN~~~~lLpg~~L~~~i~D~~~~~~~a~~~~~~ll 88 (479)
T 3sm9_A 9 KIEGDLVLGGLFPINEKGTGTEECGRINEDRGIQRLEAMLFAIDEINKDDYLLPGVKLGVHILDTCSRDTYALEQSLEFV 88 (479)
T ss_dssp EECCSEEEEEEECCEEECC-CCSEEEECTTTTHHHHHHHHHHHHHHHHCSSSSTTCCEEEEEEECTTCHHHHHHHHHHHH
T ss_pred ccCCCEEEEEEEEeEECCCCCCCCcccchhhhHHHHHHHHHHHHHHhCCCccCCCCeEeEEEEecCCChHHHHHHHHHHH
Confidence 467899999999995 1 257888999999999999999999999999999999999999999999999
Q ss_pred hc-------------------------CcEEEEccCChhhHHHHHHhhhhCCCcEEEeecCCCCCCC-CCCCcEEEccCC
Q 002211 112 ET-------------------------DTLAIVGPQSAVMAHVLSHLANELQVPLLSFTALDPTLSP-LQYPFFVQTAPN 165 (953)
Q Consensus 112 ~~-------------------------~v~aiiGp~~S~~a~av~~v~~~~~vP~Is~~at~~~ls~-~~~p~~fr~~p~ 165 (953)
++ +|+|||||.+|+.+.+++++++.+++|+|++++++|.|++ .+||||||+.|+
T Consensus 89 ~~~~~~~~~pny~C~~~~~~~~~~~~~~v~aviG~~~S~~s~ava~i~~~~~iP~Is~~a~~~~lsd~~~~p~~fr~~ps 168 (479)
T 3sm9_A 89 RASLTKVDEAEYMCPDGSYAIQENIPLLIAGVIGGSYSSVSIQVANLLRLFQIPQISYASTSAKLSDKSRYDYFARTVPP 168 (479)
T ss_dssp HTCC-----------------------CEEEEECCSSHHHHHHHHHHHGGGTCCEEESSCCCGGGGCTTTTTTEEESSCC
T ss_pred hCCCccCCCCCCccCCCCccccccCCCceEEEECCCCcHHHHHHHHHHhcCCccEECCCcCCccccCcccCCCeEEeCCc
Confidence 74 5999999999999999999999999999999999999998 579999999999
Q ss_pred hHHHHHHHHHHHHHcCCcEEEEEEecCccccchHHHHHHHHHhcCcEEEEEEecCCCCCCChHHHHHHH-HHHhcCCceE
Q 002211 166 DLYLMSAIAEMVSYFGWGEVIAIFNDDDQGRNGVTALGDKLAEIRCKISYKSALPPDQSVTETDVRNEL-VKVRMMEARV 244 (953)
Q Consensus 166 d~~~~~ai~~~l~~~~w~~vaii~~d~~~g~~~~~~l~~~l~~~g~~v~~~~~~~~~~~~~~~d~~~~l-~~i~~~~~~v 244 (953)
|..|+.+++++++++||+||++|++|++||+...+.|++++++.|+||++.+.++.. ....|+..++ ++++++++||
T Consensus 169 d~~~~~a~~~ll~~fgw~~V~ii~~dd~~G~~~~~~~~~~~~~~Gi~v~~~~~i~~~--~~~~d~~~~l~~~i~~s~a~v 246 (479)
T 3sm9_A 169 DFYQAKAMAEILRFFNWTYVSTVASEGDYGETGIEAFEQEARLRNISIATAEKVGRS--NIRKSYDSVIRELLQKPNARV 246 (479)
T ss_dssp THHHHHHHHHHHHHTTCCEEEEEEESSHHHHHHHHHHHHHHHTTTCEEEEEEEECC----CHHHHHHHHHHHHTCTTCCE
T ss_pred HHHHHHHHHHHHHHCCCeEEEEEEecchhhHHHHHHHHHHHHHCCceEEEEEEcCCC--CChHHHHHHHHHHHhcCCCeE
Confidence 999999999999999999999999999999999999999999999999999999865 4478999999 7788899999
Q ss_pred EEEEcchhhHHHHHHHHHHcCCCCCceEEEEeCcccccccCCCCCchhhhhhccceEEEEEecCCChhhHHHHHH-----
Q 002211 245 IVVHGYSRTGLMVFDVAQRLGMMDSGYVWIATTWLSTFIDSKSPLSLKTAKSILGALTLRQHTPDSKRRRDFVSR----- 319 (953)
Q Consensus 245 ii~~~~~~~~~~~~~~a~~~g~~~~~~~wi~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~F~~~----- 319 (953)
||+++...++..++++++++|+. ++||++++|........ .....+.|++++.++..+.|++++|+..
T Consensus 247 Ii~~~~~~~~~~l~~~~~~~g~~---~~wI~s~~w~~~~~~~~----~~~~~~~G~l~~~~~~~~ipgf~~fl~~~~p~~ 319 (479)
T 3sm9_A 247 VVLFMRSDDSRELIAAASRANAS---FTWVASDGWGAQESIIK----GSEHVAYGAITLELASQPVRQFDRYFQSLNPYN 319 (479)
T ss_dssp EEEECCHHHHHHHHHHHHHTTCC---CEEEECTTTTTCHHHHT----TCTTTTTTCEEEEECCCCCHHHHHHHHTCCTTT
T ss_pred EEEEcChHHHHHHHHHHHHhCCE---EEEEEechhhcCccccc----cccccCceEEEEEeccCCCcchhhHhhccCcCc
Confidence 99999999999999999999985 79999998865321110 1235689999999999999999888754
Q ss_pred ----------HHhhcCCCC---------------------CCCchhhHHhhHHHHHHHHHHHHHhcCCcccccCCCccCC
Q 002211 320 ----------WNTLSNGSI---------------------GLNPYGLYAYDTVWMIARALKLFLDQGNTISFSNDTKLNG 368 (953)
Q Consensus 320 ----------~~~~~~~~~---------------------~~~~~~~~~YDAv~~la~Al~~~~~~~~~~~~~~~~~~~~ 368 (953)
|+..|++.. ........+||||+++|+||+++..+....
T Consensus 320 ~p~d~~~~~~w~~~f~C~~~~~~~~~~~C~~~~~l~~~~~~~~~~~~~vy~AVyavA~ALh~m~~~~~~~---------- 389 (479)
T 3sm9_A 320 NHRNPWFRDFWEQKFQCSLQNKRNHRRVCDKHLAIDSSNYEQESKIMFVVNAVYAMAHALHKMQRTLCPN---------- 389 (479)
T ss_dssp CTTCTTHHHHHHHHHTCBCCC---CSCBCCTTCCCCTTTCCCCTTHHHHHHHHHHHHHHHHHHHHHHSTT----------
T ss_pred CCCCHHHHHHHHHHcCCCCCCCcccccCCCCccccccCccccccchhhHHHHHHHHHHHHHHHHHhhcCC----------
Confidence 565554210 111234689999999999999997631110
Q ss_pred CCCCcccCCCccccCchHHHH-HHHHhcccCCc------ce-eEEEccCCCCCCccEEEEEeec---CCeeeEEEEec
Q 002211 369 LGGGTLNLGALSIFDGGKKFL-ANILQTNMTGL------SG-PIHFNQDRSLLHPSYDIINVIE---HGYPQQIGYWS 435 (953)
Q Consensus 369 ~~~~~~~~~~~~~~~~~~~l~-~~l~~~~f~G~------tG-~v~Fd~~g~~~~~~y~I~~~~~---~~~~~~VG~w~ 435 (953)
....|.....+ ++++|+ ++|++++|.+. +| ++.||++|++ ...|+|+|++. ...+++||.|+
T Consensus 390 ---~~~~c~~~~~~-~~~qL~~~~Lk~v~F~~~~~~~~~~g~~v~fd~~G~~-~~~YdI~n~~~~~~~~~~~~VG~~~ 462 (479)
T 3sm9_A 390 ---TTKLCDAMKIL-DGKKLYKDYLLKINFTAPFNPNKDADSIVKFDTFGDG-MGRYNVFNFQNVGGKYSYLKVGHWA 462 (479)
T ss_dssp ---CSSCCHHHHSC-CHHHHHHHTGGGCCEECTTC-----CCEECCCTTCBC-CCCEEEEEEEESSSCEEEEEEEEES
T ss_pred ---CCcCCCCCCCc-ChHHHHHHHhcceeeccccCccccCCCeEEECCCCCc-ccceEEEEEEECCCcEEEEEEEEEe
Confidence 01123332233 489999 99999999998 56 6999999995 78999999973 23458999997
No 12
>1dp4_A Atrial natriuretic peptide receptor A; periplasmic binding protein fold, dimer, hormone/growth FACT receptor, lyase complex; HET: NAG; 2.00A {Rattus norvegicus} SCOP: c.93.1.1 PDB: 1t34_A* 3a3k_A*
Probab=100.00 E-value=3e-48 Score=446.57 Aligned_cols=360 Identities=15% Similarity=0.196 Sum_probs=306.7
Q ss_pred ceEEEeEEEecC---CCchhHHHH-HHHHHHHHHhcCCCCCCCcEEEEEEecC-----CCChHHHHHHHHHHHh-cCcEE
Q 002211 48 EVLNVGAIFSFG---TVNGQVSRI-AMKAAQDDINSDPRVLGGRKLSITMHDA-----KFNGFLSIMGALQFME-TDTLA 117 (953)
Q Consensus 48 ~~i~IG~l~~~~---~~~g~~~~~-a~~lAve~iN~~g~il~g~~l~l~~~D~-----~~~~~~a~~~a~~li~-~~v~a 117 (953)
++|+||+++|++ +..|..... |+++|+|+||++||+|+|++|+++++|+ +|++..++..+.+++. ++|.+
T Consensus 1 g~i~IG~l~p~sg~~~~~g~~~~~~a~~~Av~~iN~~ggil~g~~l~~~~~D~~~~p~~c~~~~a~~~a~~~l~~~~v~a 80 (435)
T 1dp4_A 1 SDLTVAVVLPLTNTSYPWSWARVGPAVELALARVKARPDLLPGWTVRMVLGSSENAAGVCSDTAAPLAAVDLKWEHSPAV 80 (435)
T ss_dssp CEEEEEEEECSSCCCSTTCHHHHHHHHHHHHHHHHTCTTSSTTCEEEEEEEECBCTTSSBCTTHHHHHHHHHHHHHCCSE
T ss_pred CceEEEEEccCcCCCCceeHHHHHHHHHHHHHHHHhCCCCCCCceEEEEEecCcCcccccchhhHHHHHHHHHHhcCceE
Confidence 479999999998 356777777 9999999999999999999999999999 5556688888888775 49999
Q ss_pred EEccCChhhHHHHHHhhhhCCCcEEEeecCCCCCCC-CCCCcEEEccCChHHHHHHHHHHHHHcCCcEEEEE------Ee
Q 002211 118 IVGPQSAVMAHVLSHLANELQVPLLSFTALDPTLSP-LQYPFFVQTAPNDLYLMSAIAEMVSYFGWGEVIAI------FN 190 (953)
Q Consensus 118 iiGp~~S~~a~av~~v~~~~~vP~Is~~at~~~ls~-~~~p~~fr~~p~d~~~~~ai~~~l~~~~w~~vaii------~~ 190 (953)
||||.+|..+.+++++++.+++|+|+++++++.+++ ..||||||+.|++..|+.+++++++++||++|++| ++
T Consensus 81 viG~~~S~~~~av~~~~~~~~ip~is~~~~~~~ls~~~~~~~~fr~~p~~~~~~~a~~~~l~~~~w~~v~ii~~~d~~~~ 160 (435)
T 1dp4_A 81 FLGPGCVYSAAPVGRFTAHWRVPLLTAGAPALGIGVKDEYALTTRTGPSHVKLGDFVTALHRRLGWEHQALVLYADRLGD 160 (435)
T ss_dssp EECCCSHHHHHHHHHHHHHHTCCEEESCCCCGGGGCTTTSTTEEECSCCHHHHHHHHHHHHHHHTCCSEEEEEEECCSSS
T ss_pred EECCCChHHHHHHHHHHHhcCCcEEcccccccccCcccccCeEEEecCcHHHHHHHHHHHHHHCCCcEEEEEEEccCCCC
Confidence 999999999999999999999999999999999998 46999999999999999999999999999999999 77
Q ss_pred cCccccchHHHHHHHHHh-cCcEEEEEEecCCCCCCChHHHHHHHHHHhcCCceEEEEEcchhhHHHHHHHHHHcCCCCC
Q 002211 191 DDDQGRNGVTALGDKLAE-IRCKISYKSALPPDQSVTETDVRNELVKVRMMEARVIVVHGYSRTGLMVFDVAQRLGMMDS 269 (953)
Q Consensus 191 d~~~g~~~~~~l~~~l~~-~g~~v~~~~~~~~~~~~~~~d~~~~l~~i~~~~~~vii~~~~~~~~~~~~~~a~~~g~~~~ 269 (953)
|++|| ...+.+.+++++ .|+||+..+.++.+ ..|+..++++|++ ++||||+++...++..++++++++|+..+
T Consensus 161 ~~~~g-~~~~~~~~~~~~~~g~~v~~~~~~~~~----~~d~~~~l~~i~~-~~~viv~~~~~~~~~~~~~~a~~~g~~~~ 234 (435)
T 1dp4_A 161 DRPCF-FIVEGLYMRVRERLNITVNHQEFVEGD----PDHYPKLLRAVRR-KGRVIYICSSPDAFRNLMLLALNAGLTGE 234 (435)
T ss_dssp CCHHH-HHHHHHHHHHHHHHCCEEEEEEECTTC----GGGHHHHHHHHHH-HCSEEEEESCHHHHHHHHHHHHHTTCCTT
T ss_pred cchHH-HHHHHHHHHHHhhcCeEEEEEEEecCc----hhhHHHHHHHHHh-hCceEEEecChHHHHHHHHHHHHcCCCCC
Confidence 78888 566778888888 99999988776544 7889999999998 99999999999999999999999999877
Q ss_pred ceEEEEeCccccccc---------CC---CCCchhhhhhccceEEEEEecCCChhhHHHHHHHHhhcCC----C---CCC
Q 002211 270 GYVWIATTWLSTFID---------SK---SPLSLKTAKSILGALTLRQHTPDSKRRRDFVSRWNTLSNG----S---IGL 330 (953)
Q Consensus 270 ~~~wi~~~~~~~~~~---------~~---~~~~~~~~~~~~g~~~~~~~~~~~~~~~~F~~~~~~~~~~----~---~~~ 330 (953)
+|+||.++++..... .. ....+...++++|++++.++.|+.+..++|.++|+++++. . ..+
T Consensus 235 ~~~~i~~~~~~~~~~~~~~g~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~ 314 (435)
T 1dp4_A 235 DYVFFHLDVFGQSLKSAQGLVPQKPWERGDGQDRSARQAFQAAKIITYKEPDNPEYLEFLKQLKLLADKKFNFTVEDGLK 314 (435)
T ss_dssp TCEEEEECTTCTTSCSSCTTSCBCTTCCSSSCHHHHHHHGGGEEEEEECCCCSHHHHHHHHHHHHHHHHHHCCCCCCSGG
T ss_pred CEEEEEEecccccccccccccccCCcccCCcchHHHHHHhheeEEEecCCCCChhHHHHHHHHHHHhcCCCCcccccchh
Confidence 799999997665321 00 0001345567899999988888889999999999877531 1 126
Q ss_pred CchhhHHhhHHHHHHHHHHHHHhcCCcccccCCCccCCCCCCcccCCCccccCchHHHHHHHHhcccCCcceeEEEccCC
Q 002211 331 NPYGLYAYDTVWMIARALKLFLDQGNTISFSNDTKLNGLGGGTLNLGALSIFDGGKKFLANILQTNMTGLSGPIHFNQDR 410 (953)
Q Consensus 331 ~~~~~~~YDAv~~la~Al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~f~G~tG~v~Fd~~g 410 (953)
+.+++++||||+++|+|++++..+++. ..++++|+++|++++|+|++|++.||++|
T Consensus 315 ~~~~~~~ydav~~~a~Al~~~~~~~~~------------------------~~~~~~l~~~l~~~~f~g~~G~v~fd~~g 370 (435)
T 1dp4_A 315 NIIPASFHDGLLLYVQAVTETLAQGGT------------------------VTDGENITQRMWNRSFQGVTGYLKIDRNG 370 (435)
T ss_dssp GHHHHHHHHHHHHHHHHHHHHHHTTCC------------------------TTCHHHHHHTTTTEEEEETTEEEEECTTS
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHcCCC------------------------CCCHHHHHHHHhCceeeccceeEEECCCC
Confidence 678999999999999999998654221 11589999999999999999999999999
Q ss_pred CCCCccEEEEEee-cCCeeeEEEEecCCC
Q 002211 411 SLLHPSYDIINVI-EHGYPQQIGYWSNYS 438 (953)
Q Consensus 411 ~~~~~~y~I~~~~-~~~~~~~VG~w~~~~ 438 (953)
++. ..|+|+++. .+|.++.||.|++..
T Consensus 371 ~~~-~~~~i~~~~~~~g~~~~vg~~~~~~ 398 (435)
T 1dp4_A 371 DRD-TDFSLWDMDPETGAFRVVLNYNGTS 398 (435)
T ss_dssp BBC-CCEEEEEECTTTCCEEEEEEECTTT
T ss_pred Ccc-ceeEEEEecCCCCcEEEEEEecCCC
Confidence 964 799999994 234459999998875
No 13
>3ks9_A Mglur1, metabotropic glutamate receptor 1; glutamate receptors, dimerization, glutamic acid BIN structural genomics, structural genomics consortium; HET: Z99 NAG; 1.90A {Homo sapiens} SCOP: c.93.1.1 PDB: 1ewk_A* 1ewt_A* 1ewv_A 1isr_A* 1iss_A* 3lmk_A*
Probab=100.00 E-value=6e-48 Score=448.09 Aligned_cols=391 Identities=20% Similarity=0.319 Sum_probs=314.3
Q ss_pred CCCceEEEeEEEecCC-----------------CchhHHHHHHHHHHHHHhcCCCCCCCcEEEEEEecCCCChHHHHHHH
Q 002211 45 LKPEVLNVGAIFSFGT-----------------VNGQVSRIAMKAAQDDINSDPRVLGGRKLSITMHDAKFNGFLSIMGA 107 (953)
Q Consensus 45 ~~~~~i~IG~l~~~~~-----------------~~g~~~~~a~~lAve~iN~~g~il~g~~l~l~~~D~~~~~~~a~~~a 107 (953)
..+++|.||++||++. ..|.+...|+.+||||||+++++|||++|+++++|+|+++..|++++
T Consensus 13 ~~~GDi~iGglf~vh~~~~~~~~~~~~c~~~~~~~g~~~~~a~~~AieeIN~~~~lLpn~tLg~~i~D~~~~~~~a~~~a 92 (496)
T 3ks9_A 13 RMDGDVIIGALFSVHHQPPAEKVPERKCGEIREQYGIQRVEAMFHTLDKINADPVLLPNITLGSEIRDSCWHSSVALEQS 92 (496)
T ss_dssp EECCSEEEEEEECSBCCCCGGGTTTTCCCCBCTTTTHHHHHHHHHHHHHHHTCSSSSTTCCEEEEEEECTTCHHHHHHHH
T ss_pred ecCCCEEEEEEEEeEEcCccCCCCCCCCccccchhhHHHHHHHHHHHHHHhCCCCCCCCceEeEEEEEcCCCcHHHHHHH
Confidence 4688999999999862 13567889999999999999999999999999999999999999999
Q ss_pred HHHH-----------------------------hcCcEEEEccCChhhHHHHHHhhhhCCCcEEEeecCCCCCCC-CCCC
Q 002211 108 LQFM-----------------------------ETDTLAIVGPQSAVMAHVLSHLANELQVPLLSFTALDPTLSP-LQYP 157 (953)
Q Consensus 108 ~~li-----------------------------~~~v~aiiGp~~S~~a~av~~v~~~~~vP~Is~~at~~~ls~-~~~p 157 (953)
.+++ +++|+|||||.+|+.+.+++++++.+++|+|++++++|.+++ .+||
T Consensus 93 ~~ll~~~~~s~~~~~~~n~~C~~~~~~~~~~~~~~~v~aviG~~~S~~s~ava~i~~~~~iP~Is~~a~~~~lsd~~~~p 172 (496)
T 3ks9_A 93 IEFIRDSLISIRDEKDGINRCLPDGQSLPPGRTKKPIAGVIGPGSSSVAIQVQNLLQLFDIPQIAYSATSIDLSDKTLYK 172 (496)
T ss_dssp HHHHSTTC--------------------------CCEEEEECCSSHHHHHHHHHHHGGGTCCEEESSCCCGGGGCTTTCT
T ss_pred HHHHHhhhccccccCCCCccccCcccccccccCCCceEEEECCCccHHHHHHHHHHhhcceeEECCCcCCccccCccCCC
Confidence 9998 338999999999999999999999999999999999999999 6799
Q ss_pred cEEEccCChHHHHHHHHHHHHHcCCcEEEEEEecCccccchHHHHHHHHHhcCcEEEEEEecCCCCCCChHHHHHHHHHH
Q 002211 158 FFVQTAPNDLYLMSAIAEMVSYFGWGEVIAIFNDDDQGRNGVTALGDKLAEIRCKISYKSALPPDQSVTETDVRNELVKV 237 (953)
Q Consensus 158 ~~fr~~p~d~~~~~ai~~~l~~~~w~~vaii~~d~~~g~~~~~~l~~~l~~~g~~v~~~~~~~~~~~~~~~d~~~~l~~i 237 (953)
||||+.|+|..|+.+++++++++||+||++|++|++||+...+.|++++++.|+||++.+.++.. ....|+..++++|
T Consensus 173 ~~frt~psd~~~~~ai~~ll~~fgw~~V~li~~dd~~G~~~~~~~~~~~~~~Gi~v~~~~~i~~~--~~~~d~~~~l~~i 250 (496)
T 3ks9_A 173 YFLRVVPSDTLQARAMLDIVKRYNWTYVSAVHTEGNYGESGMDAFKELAAQEGLSIAHSDKIYSN--AGEKSFDRLLRKL 250 (496)
T ss_dssp TEEESSCCTHHHHHHHHHHHHHTTCCEEEEEEESSHHHHHHHHHHHHHHHHTTCEEEEEEEECTT--CCHHHHHHHHHHH
T ss_pred ceEEecCChHHHHHHHHHHHHHcCCcEEEEEEeccHHHHHHHHHHHHHHHHcCceEEEEEEECCC--CCHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999888754 4588999999999
Q ss_pred hcC--CceEEEEEcchhhHHHHHHHHHHcCCCCCceEEEEeCcccccccCCCCCchhhhhhccceEEEEEecCCChhhHH
Q 002211 238 RMM--EARVIVVHGYSRTGLMVFDVAQRLGMMDSGYVWIATTWLSTFIDSKSPLSLKTAKSILGALTLRQHTPDSKRRRD 315 (953)
Q Consensus 238 ~~~--~~~vii~~~~~~~~~~~~~~a~~~g~~~~~~~wi~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~ 315 (953)
+++ +++||++++...++..++++++++|+.+ .++||++++|....... ......+.|++++.++.++.|++++
T Consensus 251 ~~~~~~a~vii~~~~~~~~~~l~~~~~~~g~~~-k~~~i~s~~w~~~~~~~----~~~~~~~~G~l~~~~~~~~ipgf~~ 325 (496)
T 3ks9_A 251 RERLPKARVVVCFCEGMTVRGLLSAMRRLGVVG-EFSLIGSDGWADRDEVI----EGYEVEANGGITIKLQSPEVRSFDD 325 (496)
T ss_dssp HTTTTTTCEEEEECCHHHHHHHHHHHHHHTCCS-CCEEEECTTTTTCHHHH----TTCHHHHTTCEEEEECCCCCHHHHH
T ss_pred HhccCceEEEEEecChHHHHHHHHHHHHhCCCC-cEEEEEechhccccccc----cccccccCceEEEeccCCcCcchHh
Confidence 985 8999999999999999999999999864 46899999886532211 1133568999999999999999999
Q ss_pred HHHH---------------HHhhcCCCCC------------------------CCchhhHHhhHHHHHHHHHHHHHhcCC
Q 002211 316 FVSR---------------WNTLSNGSIG------------------------LNPYGLYAYDTVWMIARALKLFLDQGN 356 (953)
Q Consensus 316 F~~~---------------~~~~~~~~~~------------------------~~~~~~~~YDAv~~la~Al~~~~~~~~ 356 (953)
|+.. |+..|++... ........|+|||++|+|||++..+.+
T Consensus 326 fl~~~~p~~~p~d~~l~~~W~~~f~C~~~~~~~~~~~~~~~C~~~~~l~~~~~~~~~~~~vy~AVyavAhALh~m~~~~~ 405 (496)
T 3ks9_A 326 YFLKLRLDTNTRNPWFPEFWQHRFQCRLPGHLLENPNFKRICTGNESLEENYVQDSKMGFVINAIYAMAHGLQNMHHALC 405 (496)
T ss_dssp HHTTCCTTTCCSCTTHHHHHHHHTTCBCCC-----CCCSSBCCSCCCTTTTCCCCTTHHHHHHHHHHHHHHHHHHHHHHS
T ss_pred HhccCCcCCCCCCHHHHHHHHHHcCCCCCCCccccccccCCCCCcccccccccccchHHHHHHHHHHHHHHHHHHHhccC
Confidence 8754 6655542100 011124699999999999999975422
Q ss_pred cccccCCCccCCCCCCcccCCCccccCchHHHHHHHHhcccCCccee-EEEccCCCCCCccEEEEEeec----CCeeeEE
Q 002211 357 TISFSNDTKLNGLGGGTLNLGALSIFDGGKKFLANILQTNMTGLSGP-IHFNQDRSLLHPSYDIINVIE----HGYPQQI 431 (953)
Q Consensus 357 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~f~G~tG~-v~Fd~~g~~~~~~y~I~~~~~----~~~~~~V 431 (953)
.. ....|.....+ .+++|+++|++++|.+.+|+ +.||++|+ ....|+|+|++. ...+++|
T Consensus 406 ~~-------------~~~~c~~~~~~-~~~qL~~~Lk~v~f~~~~g~~v~fd~~gd-~~~~YdI~n~~~~~~~~~~~~~V 470 (496)
T 3ks9_A 406 PG-------------HVGLCDAMKPI-DGSKLLDFLIKSSFIGVSGEEVWFDEKGD-APGRYDIMNLQYTEANRYDYVHV 470 (496)
T ss_dssp TT-------------CSSCCGGGSSC-CHHHHHHHHHTCEEECTTSCEEECCTTSC-CCCEEEEEEEEECC--CEEEEEE
T ss_pred CC-------------CCCCCcCCCCC-CHHHHHHHHHhcCCcCCCCCEEEECCCCC-ccceEEEEEEEECCCCCEEEEEE
Confidence 10 11123334344 48999999999999999995 99999999 478999999972 2345899
Q ss_pred EEecCCCCccccCCcccccCCCCCCCCCCcceeeEeCCCcccCCCc
Q 002211 432 GYWSNYSGLSVVPPEKLYRKPANRSSSNQHLYSVVWPGGVTSKPRG 477 (953)
Q Consensus 432 G~w~~~~gl~~~~~~~~~~~~~~~~~~~~~l~~i~Wpg~~~~~P~~ 477 (953)
|.|+.. .|.+ +...| |.++..++|+|
T Consensus 471 G~~~~~-~l~i------------------~~~~i-w~~~~~~vP~~ 496 (496)
T 3ks9_A 471 GTWHEG-VLNI------------------DDYKI-QMNKSGLVPRG 496 (496)
T ss_dssp EEEETT-EEEE------------------CTTTC------------
T ss_pred EEEeCC-eEEE------------------ehhhc-ccCCCCCCCCC
Confidence 999732 2322 12235 88887788875
No 14
>3qek_A NMDA glutamate receptor subunit; amino terminal domain, ION channel, NMDA receptor, allosteri modulation, phenylethanolamine, polyamine; HET: NAG BMA; 2.00A {Xenopus laevis} PDB: 3qel_A* 3qem_A* 3q41_A*
Probab=100.00 E-value=6.1e-48 Score=435.95 Aligned_cols=338 Identities=22% Similarity=0.327 Sum_probs=283.8
Q ss_pred CCceEEEeEEEecCCCchhHHHHHHHHHHHHHhcCCCCCCCcEEEEEEecCCCChHHHHHHHHH-HHhcCcEEEEc----
Q 002211 46 KPEVLNVGAIFSFGTVNGQVSRIAMKAAQDDINSDPRVLGGRKLSITMHDAKFNGFLSIMGALQ-FMETDTLAIVG---- 120 (953)
Q Consensus 46 ~~~~i~IG~l~~~~~~~g~~~~~a~~lAve~iN~~g~il~g~~l~l~~~D~~~~~~~a~~~a~~-li~~~v~aiiG---- 120 (953)
.+++|+||+++|++ ..+.|+++|+++||++++. .|++|+++..|+++||.+++.++++ |++++|.||||
T Consensus 2 ~~~~i~IG~i~~~s-----~~~~~~~lAv~~iN~~~~~-~~~~l~~~~~d~~~d~~~a~~~~~~~Li~~~V~aiiG~~~~ 75 (384)
T 3qek_A 2 DPKIVNIGAVLSTK-----KHEQIFREAVNQANKRHFT-RKIQLQATSVTHRPNAIQMALSVCEDLISSQVYAILVSHPP 75 (384)
T ss_dssp CCEEEEEEEEESSH-----HHHHHHHHHHHHHHHHSCC-SSEEEEEEEEECCSSHHHHHHHHHHHTGGGTEEEEEECC--
T ss_pred CceEEEEeEEeeCc-----hHHHHHHHHHHHHhccccC-CceEEEEEEecccCCHHHHHHHHHHHHHHcCceEEEEecCC
Confidence 46799999999998 6799999999999999876 4799999999999999999976555 89899999999
Q ss_pred -cCChhhHHHHHHhhhhCCCcEEEeecCCCCCCC-CCCCcEEEccCChHHHHHHHHHHHHHcCCcEEEEEEecCccccch
Q 002211 121 -PQSAVMAHVLSHLANELQVPLLSFTALDPTLSP-LQYPFFVQTAPNDLYLMSAIAEMVSYFGWGEVIAIFNDDDQGRNG 198 (953)
Q Consensus 121 -p~~S~~a~av~~v~~~~~vP~Is~~at~~~ls~-~~~p~~fr~~p~d~~~~~ai~~~l~~~~w~~vaii~~d~~~g~~~ 198 (953)
|.+|..+.+++++++.+++|+|+++++++.+++ .+||||||+.|++..|+.+++++++++||++|++||+|++||++.
T Consensus 76 ~~~~s~~~~a~~~~~~~~~iP~is~~~~~~~ls~~~~~~~~fr~~~~~~~~~~a~~~~~~~~gw~~v~ii~~d~~~G~~~ 155 (384)
T 3qek_A 76 APTDHLTPTPISYTAGFYRIPVIGLTTRMSIYSDKSIHLSFLRTVPPYSHQALVWFEMMRLFNWNHVILIVSDDHEGRAA 155 (384)
T ss_dssp ------CCHHHHHHHHTTTCCEEESSCCCGGGGCSSSCTTEEESSCCGGGHHHHHHHHHHHTTCCEEEEEEESSHHHHHH
T ss_pred CCccchhHHHHHHHHhcCCCCEEecccCchhccCcccCCceEEecCChHHHHHHHHHHHHHcCCeEEEEEEEcCcccHHH
Confidence 678888999999999999999999999999998 678999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhcCcEEE-----------EE-------E---ecCCCCCCChHHHHHHHHHHhcCCceEEEEEcchhhHHHH
Q 002211 199 VTALGDKLAEIRCKIS-----------YK-------S---ALPPDQSVTETDVRNELVKVRMMEARVIVVHGYSRTGLMV 257 (953)
Q Consensus 199 ~~~l~~~l~~~g~~v~-----------~~-------~---~~~~~~~~~~~d~~~~l~~i~~~~~~vii~~~~~~~~~~~ 257 (953)
.+.|++++++.|++++ +. + .++.+ +.|+..+|++|+++++|+||+++.+.++..+
T Consensus 156 ~~~~~~~~~~~g~~v~~~~~~~~~~v~~~~~~~~~~~~v~~~~~~----~~d~~~~l~~i~~~~~~vii~~~~~~~~~~~ 231 (384)
T 3qek_A 156 QKKLETLLEGKESKSKKRNYENLDQLSYDNKRGPKADKVLQFEPG----TKNLTALLLEAKELEARVIILSASEDDATAV 231 (384)
T ss_dssp HHHHHHHHC--------------CCSCCCCCCCCEEEEEEEECTT----CSCCHHHHHHHHTSSCCEEEEECCHHHHHHH
T ss_pred HHHHHHHHHhccCccccccccccceeeeccccCcccceecccCCc----hhhHHHHHHHHHhcCCcEEEEECCHHHHHHH
Confidence 9999999999998542 11 1 22333 6789999999999999999999999999999
Q ss_pred HHHHHHcCCCCCceEEEEeCcccccccCCCCCchhhhhhccceEEEEEecCCChhhHHHHHHHHhhcCCCCCCCchhhHH
Q 002211 258 FDVAQRLGMMDSGYVWIATTWLSTFIDSKSPLSLKTAKSILGALTLRQHTPDSKRRRDFVSRWNTLSNGSIGLNPYGLYA 337 (953)
Q Consensus 258 ~~~a~~~g~~~~~~~wi~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~F~~~~~~~~~~~~~~~~~~~~~ 337 (953)
+++|+++||++++|+||+++++... ....+.++|++++..+.++. .++++
T Consensus 232 ~~~a~~~g~~~~~~~~i~~~~~~~~--------~~~~~~~~g~lg~~~~~~~~----------------------~~~~~ 281 (384)
T 3qek_A 232 YKSAAMLDMTGAGYVWLVGEREISG--------SALRYAPDGIIGLQLINGKN----------------------ESAHI 281 (384)
T ss_dssp HHHHHHTTCSSTTCEEECCSGGGSG--------GGGSSCCTTCEEEEETTTTC----------------------HHHHH
T ss_pred HHHHHHcCCccCCeEEEEecccccc--------ccccccCCccEEEEEcCCCc----------------------hhHHH
Confidence 9999999999888999999987532 12346789999999876543 26789
Q ss_pred hhHHHHHHHHHHHHHhcCCcccccCCCccCCCCCCcccC-CCccccCchHHHHHHHHhccc-CCcceeEEEccCCCCCCc
Q 002211 338 YDTVWMIARALKLFLDQGNTISFSNDTKLNGLGGGTLNL-GALSIFDGGKKFLANILQTNM-TGLSGPIHFNQDRSLLHP 415 (953)
Q Consensus 338 YDAv~~la~Al~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~l~~~l~~~~f-~G~tG~v~Fd~~g~~~~~ 415 (953)
||||+++|+|++++..+.... +....| ....+|..+..|.+.+.+++| +|++|++.||++|++...
T Consensus 282 YdAV~~~a~Al~~~~~~~~~~------------~~~~~c~~~~~~~~~~~~l~~~~~~~~f~~G~~G~v~fd~~G~~~~~ 349 (384)
T 3qek_A 282 SDAVAVVAQAIHELFEMENIT------------DPPRGCVGNTNIWKTGPLFKRVLMSSKYPDGVTGRIEFNEDGDRKFA 349 (384)
T ss_dssp HHHHHHHHHHHHHHHTSSSCC------------CCCSCCTTCCCCCTTHHHHHHHHHTCCEEEETTEEECBCTTSCBCSC
T ss_pred HHHHHHHHHHHHHHHhccCCC------------CCCCccccCCCccccHHHHHHHHhcCCccCCCCcceEECCCCCCCcc
Confidence 999999999999997653211 111123 345678789999999999998 999999999999998789
Q ss_pred cEEEEEeecCCeeeEEEEecC
Q 002211 416 SYDIINVIEHGYPQQIGYWSN 436 (953)
Q Consensus 416 ~y~I~~~~~~~~~~~VG~w~~ 436 (953)
.|+|+|+++++. ++||+|+.
T Consensus 350 ~~~I~~~~~~~~-~~VG~w~~ 369 (384)
T 3qek_A 350 QYSIMNLQNRKL-VQVGIFNG 369 (384)
T ss_dssp CEEEEEEETTEE-EEEEEECS
T ss_pred cEEEEEEcCCce-EEEEEEeC
Confidence 999999998777 99999984
No 15
>3mq4_A Mglur7, metabotropic glutamate receptor 7; glutamate receptors, dimerization, glutamic acid BIN structural genomics, structural genomics consortium; HET: Z99; 2.80A {Homo sapiens} SCOP: c.93.1.0 PDB: 2e4z_A*
Probab=100.00 E-value=2.9e-48 Score=450.06 Aligned_cols=369 Identities=21% Similarity=0.351 Sum_probs=283.5
Q ss_pred CCCceEEEeEEEecCC-------------CchhHHHHHHHHHHHHHhcCCCCCCCcEEEEEEecCCCChHHHHHHHHHHH
Q 002211 45 LKPEVLNVGAIFSFGT-------------VNGQVSRIAMKAAQDDINSDPRVLGGRKLSITMHDAKFNGFLSIMGALQFM 111 (953)
Q Consensus 45 ~~~~~i~IG~l~~~~~-------------~~g~~~~~a~~lAve~iN~~g~il~g~~l~l~~~D~~~~~~~a~~~a~~li 111 (953)
..+++|+||+++|++. ..|.....|+++|+||||+++++|||++|+++++|+|+++..|++++.+++
T Consensus 12 ~~~gdi~IG~lf~l~~~~~~~~~C~~~~~~~g~~~~~a~~~AieeIN~~~~lLpn~~L~~~i~D~~~~~~~a~~~a~~ll 91 (481)
T 3mq4_A 12 RIEGDVTLGGLFPVHAKGPSGVPCGDIKRENGIHRLEAMLYALDQINSDPNLLPNVTLGARILDTCSRDTYALEQSLTFV 91 (481)
T ss_dssp EECCSEEEEEEECSBCCC-----CCSBCTTTTHHHHHHHHHHHHHHTTCSSSSSSCCEEEEEEECTTCHHHHHHHHGGGG
T ss_pred ccCCCEEEEEEEEceeCCCCCCCCccccchhhHHHHHHHHHHHHHHhCCCCcCCCceEEEEEEeCCCChHHHHHHHHHHH
Confidence 4678999999999973 357889999999999999999999999999999999999999999999998
Q ss_pred h-----------------------cCcEEEEccCChhhHHHHHHhhhhCCCcEEEeecCCCCCCC-CCCCcEEEccCChH
Q 002211 112 E-----------------------TDTLAIVGPQSAVMAHVLSHLANELQVPLLSFTALDPTLSP-LQYPFFVQTAPNDL 167 (953)
Q Consensus 112 ~-----------------------~~v~aiiGp~~S~~a~av~~v~~~~~vP~Is~~at~~~ls~-~~~p~~fr~~p~d~ 167 (953)
+ ++|+|||||.+|+.+.+++++++.+++|+|++++++|.|++ .+||||||+.|+|.
T Consensus 92 ~~~~~~~~pny~C~~~~~~~~~~~~~v~aiiG~~~S~~s~ava~~~~~~~iP~Is~~a~~~~lsd~~~~p~~fr~~psd~ 171 (481)
T 3mq4_A 92 QALIQKDTSDVRCTNGEPPVFVKPEKVVGVIGASGSSVSIMVANILRLFQIPQISYASTAPELSDDRRYDFFSRVVPPDS 171 (481)
T ss_dssp GGGSCCCC--------------CCCCEEEEECCSSHHHHHHHHHHHTTTTCCEEESSCCCGGGGCTTTTTTEEESSCCTH
T ss_pred hCCcccCCCCcccCCCCCcccccCCCcEEEEcCCCcHHHHHHHHHHHhCCCCEEccccCCccccCcccCCceEEecCchH
Confidence 6 46999999999999999999999999999999999999999 68999999999999
Q ss_pred HHHHHHHHHHHHcCCcEEEEEEecCccccchHHHHHHHHHh-cCcEEEEEEecCCCCCCChH--HHHHHHHHHh-cCCce
Q 002211 168 YLMSAIAEMVSYFGWGEVIAIFNDDDQGRNGVTALGDKLAE-IRCKISYKSALPPDQSVTET--DVRNELVKVR-MMEAR 243 (953)
Q Consensus 168 ~~~~ai~~~l~~~~w~~vaii~~d~~~g~~~~~~l~~~l~~-~g~~v~~~~~~~~~~~~~~~--d~~~~l~~i~-~~~~~ 243 (953)
.|+.+++++++++||+||++|++|++||+...+.|++++++ .|+||++.+.++.. .... |+...+.+++ ++++|
T Consensus 172 ~~~~a~~~ll~~fgw~~V~li~~d~~~G~~~~~~~~~~~~~~~Gi~va~~~~i~~~--~~~~~~d~~~~l~~i~~~s~a~ 249 (481)
T 3mq4_A 172 FQAQAMVDIVKALGWNYVSTLASEGSYGEKGVESFTQISKEAGGLSIAQSVRIPQE--RKDRTIDFDRIIKQLLDTPNSR 249 (481)
T ss_dssp HHHHHHHHHHHHHTCCEEEEC---CHHHHHHHHHHHHCC---CCCEECCCCCCCCC--------CCSHHHHCCCCC----
T ss_pred HHHHHHHHHHHHCCCeEEEEEEEcchhHHHHHHHHHHHHHHhCCEEEEEEEEcCCC--CccchHHHHHHHHHHHhcCCCE
Confidence 99999999999999999999999999999999999999986 79999998888765 2233 7888999998 58999
Q ss_pred EEEEEcchhhHHHHHHHHHHcCCCCCceEEEEeCcccccccCCCCCchhhhhhccceEEEEEecCCChhhHHHHHH----
Q 002211 244 VIVVHGYSRTGLMVFDVAQRLGMMDSGYVWIATTWLSTFIDSKSPLSLKTAKSILGALTLRQHTPDSKRRRDFVSR---- 319 (953)
Q Consensus 244 vii~~~~~~~~~~~~~~a~~~g~~~~~~~wi~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~F~~~---- 319 (953)
|||+++...++..++++++++|+.+ +++||+++.|....... ......+.|++++.++..+.|++++|+..
T Consensus 250 vIi~~~~~~~~~~l~~~~~~~g~~~-~~~wI~s~~w~~~~~~~----~~~~~~~~G~l~~~~~~~~ipgf~~fl~~~~p~ 324 (481)
T 3mq4_A 250 AVVIFANDEDIKQILAAAKRADQVG-HFLWVGSDSWGSKINPL----HQHEDIAEGAITIQPKRATVEGFDAYFTSRTLE 324 (481)
T ss_dssp CEEECCCSSHHHHHC-----------CCCEEEC---------------------CCCEEEEECCCCCHHHHHHHHTCCTT
T ss_pred EEEEEEChHHHHHHHHHHHHccCCc-ceEEEEECccccccccc----cccchhhccEEEEecCcCccccHHHHhhcCCcC
Confidence 9999999999999999999999864 48999999887543221 12346789999999999999999998654
Q ss_pred -----------HHhhcCCCC--------------------------CCCchhhHHhhHHHHHHHHHHHHHhcCCcccccC
Q 002211 320 -----------WNTLSNGSI--------------------------GLNPYGLYAYDTVWMIARALKLFLDQGNTISFSN 362 (953)
Q Consensus 320 -----------~~~~~~~~~--------------------------~~~~~~~~~YDAv~~la~Al~~~~~~~~~~~~~~ 362 (953)
|+..|++.. ........+||||+++|+||+++..+.+..
T Consensus 325 ~~p~d~~~~~~w~~~f~C~~~~~~~~~~~~~~~Ct~~e~l~~~~~~~~~~~~~~vy~AVyavA~ALh~m~~~~~~~---- 400 (481)
T 3mq4_A 325 NNRRNVWFAEYWEENFNCKLTISGSKKEDTDRKCTGQERIGKDSNYEQEGKVQFVIDAVYAMAHALHHMNKDLCAD---- 400 (481)
T ss_dssp TCTTCTTHHHHHHHHHTCCC------------CCCSCCCTTTSSCCCCCTTHHHHHHHHHHHHHHHHHHHHHHCC-----
T ss_pred cCCCCHHHHHHHHHhcCCCCCCccccccccCCCCCCccccCcCCcccccchhhhHHHHHHHHHHHHHHHHHhhCCC----
Confidence 555554211 011334579999999999999997532210
Q ss_pred CCccCCCCCCcccCCCccccCchHHHHHHHHhcccCCcce-eEEEccCCCCCCccEEEEEee--c--CCeeeEEEEec
Q 002211 363 DTKLNGLGGGTLNLGALSIFDGGKKFLANILQTNMTGLSG-PIHFNQDRSLLHPSYDIINVI--E--HGYPQQIGYWS 435 (953)
Q Consensus 363 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~f~G~tG-~v~Fd~~g~~~~~~y~I~~~~--~--~~~~~~VG~w~ 435 (953)
....|.....+ ++++|+++|++++|.+.+| +|.||++|++ ...|+|+|++ . ...+++||.|+
T Consensus 401 ---------~~~~c~~~~~~-~~~qL~~~Lk~v~F~~~~G~~v~fd~~Gd~-~~~YdI~n~~~~~~~~~~~~~VG~~~ 467 (481)
T 3mq4_A 401 ---------YRGVCPEMEQA-GGKKLLKYIRNVNFNGSAGTPVMFNKNGDA-PGRYDIFQYQTTNTSNPGYRLIGQWT 467 (481)
T ss_dssp ------------CCHHHHTS-CHHHHHHHHHTCEEECTTSSEEECCTTSCC-CCEEEEEEEC-----CCCEEEEEEEE
T ss_pred ---------CCCCCCCCCCc-CHHHHHHHHhcceeecCCCCEEEECCCCCC-ceeEEEEEEEECCCCcEEEEEEEEEc
Confidence 01123333334 4899999999999999999 6999999994 7899999997 2 22448999997
No 16
>3i45_A Twin-arginine translocation pathway signal protei; structural genomics; 1.36A {Rhodospirillum rubrum}
Probab=100.00 E-value=2e-41 Score=383.20 Aligned_cols=358 Identities=14% Similarity=0.154 Sum_probs=308.6
Q ss_pred CceEEEeEEEecCCC--chhHHHHHHHHHHHHHhcCCCCCCCcEEEEEEecCCCChHHHHHHHHHHHhc-CcEEEEccCC
Q 002211 47 PEVLNVGAIFSFGTV--NGQVSRIAMKAAQDDINSDPRVLGGRKLSITMHDAKFNGFLSIMGALQFMET-DTLAIVGPQS 123 (953)
Q Consensus 47 ~~~i~IG~l~~~~~~--~g~~~~~a~~lAve~iN~~g~il~g~~l~l~~~D~~~~~~~a~~~a~~li~~-~v~aiiGp~~ 123 (953)
.++|+||+++|++.. +|.....|+++|+++||++||+++|+++++++.|+++++..+++.+++|+++ +|.+||||.+
T Consensus 3 ~~~i~IG~~~p~sg~~~~g~~~~~g~~~a~~~iN~~ggi~Gg~~i~l~~~D~~~~~~~~~~~~~~li~~~~v~aiiG~~~ 82 (387)
T 3i45_A 3 LEAIRIGEINSYSQIPAFTLPYRNGWQLAVEQINAAGGLLGGRPLEVISRDDGGDPGKAVTAAQELLTRHGVHALAGTFL 82 (387)
T ss_dssp CCCEEEEEEECTTTCHHHHHHHHHHHHHHHHHHHHTTCBTTTBCEEEEEEECTTCHHHHHHHHHHHHHHHCCSEEEECCS
T ss_pred CCCEEEEEeecCCCchhhhHHHHHHHHHHHHHHHhcCCCCCCcceEEEEecCCCCHHHHHHHHHHHHHhcCCEEEECCcc
Confidence 568999999999864 5778899999999999999999855999999999999999999999999996 9999999999
Q ss_pred hhhHHHHHHhhhhCCCcEEEeecCCCCCCC-CCCCcEEEccCChHHHHHHHHHHHHHcCCcEEEEEEecCccccchHHHH
Q 002211 124 AVMAHVLSHLANELQVPLLSFTALDPTLSP-LQYPFFVQTAPNDLYLMSAIAEMVSYFGWGEVIAIFNDDDQGRNGVTAL 202 (953)
Q Consensus 124 S~~a~av~~v~~~~~vP~Is~~at~~~ls~-~~~p~~fr~~p~d~~~~~ai~~~l~~~~w~~vaii~~d~~~g~~~~~~l 202 (953)
|..+.++++++++.+||+|+++++++.++. ..+||+||+.|++..++.++++++.++||++|++|+.|++||+...+.+
T Consensus 83 s~~~~a~~~~~~~~~ip~i~~~~~~~~l~~~~~~~~~f~~~~~~~~~~~~~~~~l~~~g~~~vaii~~~~~~g~~~~~~~ 162 (387)
T 3i45_A 83 SHVGLAVSDFARQRKVLFMASEPLTDALTWEKGNRYTYRLRPSTYMQAAMLAAEAAKLPITRWATIAPNYEYGQSAVARF 162 (387)
T ss_dssp HHHHHHHHHHHHHHTCCEEECSCCCGGGTTTTCCTTEEECSCCHHHHHHHHHHHHTTSSCCEEEEECCSSHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHcCceEEecCCCchhhhhccCCCCEEEeCCChHHHHHHHHHHHHHcCCCeEEEEeCCchHhHHHHHHH
Confidence 999999999999999999999999988875 6789999999999999999999999999999999999999999999999
Q ss_pred HHHHHhc--CcEEEEEEecCCCCCCChHHHHHHHHHHhcCCceEEEEEcchhhHHHHHHHHHHcCCCCCceEEEEeCccc
Q 002211 203 GDKLAEI--RCKISYKSALPPDQSVTETDVRNELVKVRMMEARVIVVHGYSRTGLMVFDVAQRLGMMDSGYVWIATTWLS 280 (953)
Q Consensus 203 ~~~l~~~--g~~v~~~~~~~~~~~~~~~d~~~~l~~i~~~~~~vii~~~~~~~~~~~~~~a~~~g~~~~~~~wi~~~~~~ 280 (953)
++.+++. |++++....++.+ ..|+...++++++.+||+|++++...++..++++++++|+... +++.+....
T Consensus 163 ~~~l~~~~~g~~vv~~~~~~~~----~~d~~~~~~~i~~~~~d~v~~~~~~~~~~~~~~~~~~~g~~~~--~~i~~~~~~ 236 (387)
T 3i45_A 163 KELLLAARPEVTFVAEQWPALY----KLDAGPTVQALQQAEPEGLFNVLFGADLPKFVREGRVRGLFAG--RQVVSMLTG 236 (387)
T ss_dssp HHHHHHHCTTCEEEEEECCCTT----CCCHHHHHHHHHHTCCSEEEECCCTTHHHHHHHHHHHHTSSTT--CEEEEEEEE
T ss_pred HHHHHHhCCCcEEEeeecCCCC----CcCHHHHHHHHHhCCCCEEEEcCccHHHHHHHHHHHHcCCCCC--CeEEeecCC
Confidence 9999998 9999988888876 6789999999999999999999999999999999999998543 344433221
Q ss_pred --ccccCCCCCchhhhhhccceEEEEE-e-cCCChhhHHHHHHHHhhcCCCCCCCchhhHHhhHHHHHHHHHHHHHhcCC
Q 002211 281 --TFIDSKSPLSLKTAKSILGALTLRQ-H-TPDSKRRRDFVSRWNTLSNGSIGLNPYGLYAYDTVWMIARALKLFLDQGN 356 (953)
Q Consensus 281 --~~~~~~~~~~~~~~~~~~g~~~~~~-~-~~~~~~~~~F~~~~~~~~~~~~~~~~~~~~~YDAv~~la~Al~~~~~~~~ 356 (953)
..+. ....+..+|++.... + .+++|..++|.++|+++++ ..|+.+++.+|||++++++|+++++..
T Consensus 237 ~~~~~~------~~~~~~~~g~~~~~~~~~~~~~~~~~~f~~~~~~~~~--~~p~~~~~~~Yda~~~~a~Al~~ag~~-- 306 (387)
T 3i45_A 237 EPEYLN------PLKDEAPEGWIVTGYPWYDIDTAPHRAFVEAYRARWK--EDPFVGSLVGYNTLTAMAVAFEKAGGT-- 306 (387)
T ss_dssp SHHHHG------GGGGGCCSSCEEEECCGGGCCCHHHHHHHHHHHHHHS--SCCCHHHHHHHHHHHHHHHHHHHHTSC--
T ss_pred ChHHHH------HhhhhccCceEEecccccCCCCHHHHHHHHHHHHHHC--CCCCcHHHHHHHHHHHHHHHHHHhCCC--
Confidence 1111 111235688776533 2 3578999999999999997 678899999999999999999997321
Q ss_pred cccccCCCccCCCCCCcccCCCccccCchHHHHHHHHhcccCCcceeEEEccCCCCCCccEEEEEee-cCCeeeEEEEec
Q 002211 357 TISFSNDTKLNGLGGGTLNLGALSIFDGGKKFLANILQTNMTGLSGPIHFNQDRSLLHPSYDIINVI-EHGYPQQIGYWS 435 (953)
Q Consensus 357 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~f~G~tG~v~Fd~~g~~~~~~y~I~~~~-~~~~~~~VG~w~ 435 (953)
++++|+++|++++|+|++|+++|++++++......|.++. .++. ..++.|.
T Consensus 307 ---------------------------~~~~v~~al~~~~~~g~~G~i~f~~~~~~~~~~~~i~~~~~~~g~-~~i~~w~ 358 (387)
T 3i45_A 307 ---------------------------ESETLVETLKDMAFSTPMGPLSFRASDHQSTMGAWVGRTALRDGK-GVMVDWR 358 (387)
T ss_dssp ---------------------------CHHHHHHHTTTCEEEETTEEEEBCTTTCBBCCCEEEEEEEEETTE-EEEEEEE
T ss_pred ---------------------------CHHHHHHHHhcCCCcCCCCCeEEcCCCCccccceeEEEEEeeCCc-eeEEeeE
Confidence 4899999999999999999999997444467777888876 6677 8999999
Q ss_pred CCCCccccCCccc
Q 002211 436 NYSGLSVVPPEKL 448 (953)
Q Consensus 436 ~~~gl~~~~~~~~ 448 (953)
+..|..+.+|+..
T Consensus 359 ~~~~~~~~p~~~~ 371 (387)
T 3i45_A 359 YVDGGSVLPPPEV 371 (387)
T ss_dssp EECGGGGSCCHHH
T ss_pred EeCchhcCCCHHH
Confidence 9988877766443
No 17
>4f06_A Extracellular ligand-binding receptor; PSI-biology, MCSG, midwest center for structural genomics, transporter; HET: MSE PHB; 1.30A {Rhodopseudomonas palustris} PDB: 4evs_A*
Probab=100.00 E-value=1.9e-41 Score=380.52 Aligned_cols=348 Identities=16% Similarity=0.164 Sum_probs=297.3
Q ss_pred CCceEEEeEEEecCC---CchhHHHHHHHHHHHHHhcCCCCCCCcEEEEEEecCCC-ChHHHHHHHHHHHhc-CcEEEEc
Q 002211 46 KPEVLNVGAIFSFGT---VNGQVSRIAMKAAQDDINSDPRVLGGRKLSITMHDAKF-NGFLSIMGALQFMET-DTLAIVG 120 (953)
Q Consensus 46 ~~~~i~IG~l~~~~~---~~g~~~~~a~~lAve~iN~~g~il~g~~l~l~~~D~~~-~~~~a~~~a~~li~~-~v~aiiG 120 (953)
.+++|+||+++|+|. ..|...+.|+++|++++| ||++ |++|+++++|+++ +|..++..+++|+++ +|.+|||
T Consensus 2 ~Ad~IkIG~~~plSG~~a~~G~~~~~g~~la~~~~n--ggi~-G~~ielv~~D~~~~~p~~a~~~a~~Li~~d~V~aiiG 78 (371)
T 4f06_A 2 NADTIKVGVIGTMSGPYALFGKNYKMGIDAWVAEHG--NKVA-GHTVEFVYRDEVSPNPAQSKALAQELIVKEKVQYLAG 78 (371)
T ss_dssp --CEEEEEEEECCSSTTHHHHHHHHHHHHHHHHHHC--SEET-TEEEEEEEEECCSSCHHHHHHHHHHHHHTSCCSEEEE
T ss_pred CCCcEEEEEEeCCcCchHHhHHHHHHHHHHHHHHhC--CCCC-CEEEEEEEEcCCCCCHHHHHHHHHHHHhcCCCEEEEe
Confidence 457899999999984 458899999999999999 6775 8999999999986 899999999999987 8999999
Q ss_pred cCChhhHHHHHHhhhhCCCcEEEeecCCCCCCCCCCCcEEEccCChHHHHHHHHHHHHHcCCcEEEEEEecCccccchHH
Q 002211 121 PQSAVMAHVLSHLANELQVPLLSFTALDPTLSPLQYPFFVQTAPNDLYLMSAIAEMVSYFGWGEVIAIFNDDDQGRNGVT 200 (953)
Q Consensus 121 p~~S~~a~av~~v~~~~~vP~Is~~at~~~ls~~~~p~~fr~~p~d~~~~~ai~~~l~~~~w~~vaii~~d~~~g~~~~~ 200 (953)
|.+|+.+.++++++++.++|+|+++++++.++.. .||+||+.+++..++.++++++++.+|++|++|+.|++||+...+
T Consensus 79 ~~~S~~~~a~~~~~~~~~vp~i~~~a~~~~~~~~-~~~~fr~~~~~~~~~~~~~~~~~~~g~k~vaii~~~~~~g~~~~~ 157 (371)
T 4f06_A 79 LYFTPNAMAVAPLLQEAKVPMVVMNAATSSITEK-SPYIVRTSFTMFQNTVPAAKVAKQKGATKVAIAVSDYGPGIDAET 157 (371)
T ss_dssp CCSHHHHHHHGGGHHHHTCCEEESSCCCGGGGGG-CTTEEESSCCHHHHHHHHHHHHHHTTCCEEEEEEESSHHHHHHHH
T ss_pred cccccchHHHHHHHHhhcCCccccccccchhccc-CCcceecccchhhhhhhhhhhhhhcCceEEEEEcCCcccchhHHH
Confidence 9999999999999999999999999999888763 589999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhcCcEEEEEEecCCCCCCChHHHHHHHHHHhcCCceEEEEEcc-hhhHHHHHHHHHHcCCCCCceEEEEeCcc
Q 002211 201 ALGDKLAEIRCKISYKSALPPDQSVTETDVRNELVKVRMMEARVIVVHGY-SRTGLMVFDVAQRLGMMDSGYVWIATTWL 279 (953)
Q Consensus 201 ~l~~~l~~~g~~v~~~~~~~~~~~~~~~d~~~~l~~i~~~~~~vii~~~~-~~~~~~~~~~a~~~g~~~~~~~wi~~~~~ 279 (953)
.+++.+++.|++|+..+.++.+ +.|+++++.+|++++||+|++... ++++..+++++++.|+...++.++.++..
T Consensus 158 ~~~~~~~~~g~~vv~~~~~~~~----~~d~~~~l~~i~~~~pd~v~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~ 233 (371)
T 4f06_A 158 AFKKTFEAEGGKVVEAVRMPLS----TTDFGPIMQRIKNSGADMIFTFLPAGPPTLGFVKAYIDNGLKAGGVKLMSTGDV 233 (371)
T ss_dssp HHHHHHHHTTCEEEEEEEECTT----CCCCHHHHHHHHHHTCSEEEEECCTTHHHHHHHHHHHHTTTTTTTCEEEEEGGG
T ss_pred HHHHHHHhcCCceEEEEecCcc----cccHHHHHHHHHhcCCCEEEEEeccCchhhHHHHHHHHhhhhccCcEEEEeccc
Confidence 9999999999999999999988 789999999999999999988765 57788899999999998777777666543
Q ss_pred cccccCCCCCchhhhhhccceEEEEEecC--CChhhHHHHHHHHhhcCCCCCCCchhhHHhhHHHHHHHHHHHHHhcCCc
Q 002211 280 STFIDSKSPLSLKTAKSILGALTLRQHTP--DSKRRRDFVSRWNTLSNGSIGLNPYGLYAYDTVWMIARALKLFLDQGNT 357 (953)
Q Consensus 280 ~~~~~~~~~~~~~~~~~~~g~~~~~~~~~--~~~~~~~F~~~~~~~~~~~~~~~~~~~~~YDAv~~la~Al~~~~~~~~~ 357 (953)
...... ....+..+|++...++.+ ++|..++|.++|+++++....++.+++.+|||++++++|+++... .
T Consensus 234 ~~~~~~-----~~~~~~~~g~~~~~~~~~~~~~p~~~~f~~~~~~~~~~~~~~~~~a~~~Yda~~~l~~Ai~~~ag---~ 305 (371)
T 4f06_A 234 VTEPDL-----PNIGEAGLGILSTYHYAVSHDSPENKAFLALLQKGGAKLDEVTMTSVAAYDGARLIYKMIEATSG---K 305 (371)
T ss_dssp GCGGGH-----HHHCGGGTTCEEEESCCTTCCSHHHHHHHHHHHHTTCCGGGCCHHHHHHHHHHHHHHHHHHHTTT---S
T ss_pred CCHHHH-----HhcccccCceEEeeccccCCCChhHHHHHHHHHHhcCCCCCccchHHHHHHHHHHHHHHHHHhcC---C
Confidence 322111 234567788888877654 578899999999999864456788999999999999999987411 1
Q ss_pred ccccCCCccCCCCCCcccCCCccccCchHHHHHHHHhcccCCcceeEEEccCCCCCCccEEEEEeec-CCe--eeEEEEe
Q 002211 358 ISFSNDTKLNGLGGGTLNLGALSIFDGGKKFLANILQTNMTGLSGPIHFNQDRSLLHPSYDIINVIE-HGY--PQQIGYW 434 (953)
Q Consensus 358 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~f~G~tG~v~Fd~~g~~~~~~y~I~~~~~-~~~--~~~VG~w 434 (953)
.++++++++|++++|+|++|+++||++++.....+.|.++++ +|. ++.++.+
T Consensus 306 -------------------------~d~~~v~~al~~~~~~~~~G~i~fd~~~~~~~~~~~i~~v~~~dGk~v~~~~~~~ 360 (371)
T 4f06_A 306 -------------------------SDPDKAIAAVKGMKWVSPRGEVSIDPETRHITQNVYLREVEKVDGKLINRELETF 360 (371)
T ss_dssp -------------------------CCHHHHHHHHTTCEEEETTEEEEECTTTCBEEEEEEEEEEEEETTEEEEEEEEEE
T ss_pred -------------------------CCHHHHHHHHhCCCeeCCcEEEEEcCCCCcccCCEEEEEEEecCCEEEEEEEEEE
Confidence 158999999999999999999999987765667788888863 443 2444444
No 18
>3h5l_A Putative branched-chain amino acid ABC transporter; structural genomics, PSI-2, protein structure initiative; 1.70A {Ruegeria pomeroyi}
Probab=100.00 E-value=1.7e-41 Score=387.99 Aligned_cols=351 Identities=13% Similarity=0.082 Sum_probs=289.2
Q ss_pred CCCceEEEeEEEecCCC---chhHHHHHHHHHHHHHhcCCCCCCCcEEEEEEecCC-CChHHHHHHHHHHHh-cCcEEEE
Q 002211 45 LKPEVLNVGAIFSFGTV---NGQVSRIAMKAAQDDINSDPRVLGGRKLSITMHDAK-FNGFLSIMGALQFME-TDTLAIV 119 (953)
Q Consensus 45 ~~~~~i~IG~l~~~~~~---~g~~~~~a~~lAve~iN~~g~il~g~~l~l~~~D~~-~~~~~a~~~a~~li~-~~v~aii 119 (953)
..+++|+||+++|++.. .|...+.|+++|+++||++||++ |++|+++++|++ +++..++..+++|++ ++|.+||
T Consensus 10 ~~~~~i~IG~~~plsG~~a~~g~~~~~g~~lA~~~iN~~ggi~-G~~i~l~~~D~~~~~~~~a~~~a~~li~~~~v~aii 88 (419)
T 3h5l_A 10 QSSDPVVIGCPAPLTGIVAADGIEFQRGIQMAADEINAVGGIL-GRPIELVFADTQSKGVDVVIQSAQRLIDRDNASALI 88 (419)
T ss_dssp ---CCEEEEEEECCSSTTHHHHHHHHHHHHHHHHHHHTTTSBT-TBCEEEEEEECTTCCHHHHHHHHHHHHHTTCCSEEE
T ss_pred ccCCCEEEEEeecCCCcccccCHHHHHHHHHHHHHHHhcCCcC-ceEEEEEEccCCCCCHHHHHHHHHHHhhhcCCeEEE
Confidence 45679999999999864 48899999999999999999997 899999999998 699999999999999 5999999
Q ss_pred ccCChhhHHHHHHhhhhCCCcEEEeecCCCCCC-----C-CCCCcEEEccCChHHHHHHHHHHHHHc--------CCcEE
Q 002211 120 GPQSAVMAHVLSHLANELQVPLLSFTALDPTLS-----P-LQYPFFVQTAPNDLYLMSAIAEMVSYF--------GWGEV 185 (953)
Q Consensus 120 Gp~~S~~a~av~~v~~~~~vP~Is~~at~~~ls-----~-~~~p~~fr~~p~d~~~~~ai~~~l~~~--------~w~~v 185 (953)
||.+|..+.++++++++++||+|+++ +++.++ + ..|+|+||+.|++..++.+++++++++ ||++|
T Consensus 89 G~~~s~~~~a~~~~~~~~~ip~i~~~-~~~~~~~~~~~~~~~~~~~f~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~v 167 (419)
T 3h5l_A 89 AGYNLENGTALHDVAADAGVIAMHAN-TVAVHDEMVKSDPDRYWGTFQYDPPETLYGGGFLKFLKDIEDNGEFSRPNNKI 167 (419)
T ss_dssp CSCCSSCSCHHHHHHHHHTCEEEECC-CCHHHHHHHHHCTTTCTTEEESSCCTHHHHHHHHHHHHHHHHTTSCCCSSSEE
T ss_pred ccccchhHHHhHHHHHHcCCeEEEcC-cchhhhhhhhcCcccCceEEEeCCchHHHHHHHHHHHHHHHhhccccCCCCEE
Confidence 99999999999999999999999964 433322 2 468999999999999999999999886 89999
Q ss_pred EEEEecCccccchHHHHHHHHHhcCcEEEEEEecCCCCCCChHHHHHHHHHHhcCCceEEEEEcc-hhhHHHHHHHHHHc
Q 002211 186 IAIFNDDDQGRNGVTALGDKLAEIRCKISYKSALPPDQSVTETDVRNELVKVRMMEARVIVVHGY-SRTGLMVFDVAQRL 264 (953)
Q Consensus 186 aii~~d~~~g~~~~~~l~~~l~~~g~~v~~~~~~~~~~~~~~~d~~~~l~~i~~~~~~vii~~~~-~~~~~~~~~~a~~~ 264 (953)
++|++|++||+...+.|++.+++.|++|+..+.++.+ ..|+..++++|++.++|+|++.+. +.++..+++++++.
T Consensus 168 ail~~~~~~g~~~~~~~~~~~~~~g~~vv~~~~~~~~----~~d~~~~l~~i~~~~~d~v~~~~~~~~~~~~~~~~~~~~ 243 (419)
T 3h5l_A 168 AIITGPGIYSVNIANAIRDGAGEYGYDVSLFETVAIP----VSDWGPTLAKLRADPPAVIVVTHFYPQDQALFMNQFMTD 243 (419)
T ss_dssp EEEECSSHHHHHHHHHHHHHGGGGTCEEEEEEECCSS----CSCCHHHHHHHHHSCCSEEEECCCCHHHHHHHHHHHTTS
T ss_pred EEEEcCcchhHHHHHHHHHHHHHcCCeEEEEecCCCC----CccHHHHHHHHHhcCCCEEEEccccCchHHHHHHHHHHc
Confidence 9999999999999999999999999999999999877 689999999999999999999876 57899999999999
Q ss_pred CCCCCceEEEEeCcccccccCCCCCchhhhhhccceEEEEEe-cCCChhhHHHHHHHHhhcCCCCCCC-chhhHHhhHHH
Q 002211 265 GMMDSGYVWIATTWLSTFIDSKSPLSLKTAKSILGALTLRQH-TPDSKRRRDFVSRWNTLSNGSIGLN-PYGLYAYDTVW 342 (953)
Q Consensus 265 g~~~~~~~wi~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~-~~~~~~~~~F~~~~~~~~~~~~~~~-~~~~~~YDAv~ 342 (953)
|+ +..|+.++++...-.. ....+..+|++....+ .+.++..++|.++|+++|+ ..+. .+++.+|||++
T Consensus 244 g~---~~~~~~~~~~~~~~~~-----~~~g~~~~G~~~~~~~~~~~~~~~~~f~~~~~~~~g--~~p~~~~a~~~Yda~~ 313 (419)
T 3h5l_A 244 PT---NSLVYLQYGASLAAFR-----DIAGDNSVGVTYATVLGTLQDEMGDAFAKAYKERYG--DLSSTASGCQTYSALY 313 (419)
T ss_dssp CC---SCEEEECSGGGSHHHH-----HHHGGGGTTCEEEESSCCCSSHHHHHHHHHHHHHHC--TTSCHHHHHHHHHHHH
T ss_pred CC---CceEEecCCCCcHHHH-----HhhhhhcCceEEeecCCCCCCHHHHHHHHHHHHHhC--CCCCcchhHHHHHHHH
Confidence 98 3457777665432110 2344668898766554 3567889999999999997 4454 58999999999
Q ss_pred HHHHHHHHHHhcCCcccccCCCccCCCCCCcccCCCccccCchHHHHHHHHhcccCCcceeEEEccCCCCC---------
Q 002211 343 MIARALKLFLDQGNTISFSNDTKLNGLGGGTLNLGALSIFDGGKKFLANILQTNMTGLSGPIHFNQDRSLL--------- 413 (953)
Q Consensus 343 ~la~Al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~f~G~tG~v~Fd~~g~~~--------- 413 (953)
++++|++++++.... +...++++|+++|++++|+|++|+++||++|+..
T Consensus 314 ~~~~a~~~a~~~~~~----------------------g~~~~~~~l~~al~~~~~~g~~G~i~f~~~g~~~~~~~~~~~~ 371 (419)
T 3h5l_A 314 AYSIAAALAGGPGAP----------------------YDDVQNKAVADRLRSLIFRGPVGTMRFHADTQSAWSYPTETND 371 (419)
T ss_dssp HHHHHHHHTTSCCCT----------------------TCHHHHHHHHHHHHHCEEEETTEEEEBCTTTCBBCEETTTCSC
T ss_pred HHHHHHHHhcCCccC----------------------CCccCHHHHHHHHHhCCcccCceEEEECCCCCccccccCccCC
Confidence 999999987542110 1122589999999999999999999999999832
Q ss_pred ---CccEEEEEeecCCeeeEEEEe
Q 002211 414 ---HPSYDIINVIEHGYPQQIGYW 434 (953)
Q Consensus 414 ---~~~y~I~~~~~~~~~~~VG~w 434 (953)
...+.|+|++++.. +.+-.|
T Consensus 372 ~~~~~~~~i~q~q~g~~-~~~~V~ 394 (419)
T 3h5l_A 372 PSLGMPHIFSQIFDKAE-DGVLIA 394 (419)
T ss_dssp TTSSEECEEEECCCTTS-CCEEEE
T ss_pred ccccCCceEEEeeCCce-eeEEEC
Confidence 12345677664443 334455
No 19
>3ipc_A ABC transporter, substrate binding protein (amino; venus flytrap domain, transport protein; 1.30A {Agrobacterium tumefaciens} PDB: 3ip5_A 3ip6_A 3ip7_A 3ip9_A 3ipa_A
Probab=100.00 E-value=3e-40 Score=369.20 Aligned_cols=345 Identities=14% Similarity=0.122 Sum_probs=301.5
Q ss_pred ceEEEeEEEecCCC---chhHHHHHHHHHHHHHhcCCCCCCCcEEEEEEecCCCChHHHHHHHHHHHhcCcEEEEccCCh
Q 002211 48 EVLNVGAIFSFGTV---NGQVSRIAMKAAQDDINSDPRVLGGRKLSITMHDAKFNGFLSIMGALQFMETDTLAIVGPQSA 124 (953)
Q Consensus 48 ~~i~IG~l~~~~~~---~g~~~~~a~~lAve~iN~~g~il~g~~l~l~~~D~~~~~~~a~~~a~~li~~~v~aiiGp~~S 124 (953)
++|+||+++|++.. +|.....|+++|++++|++||++ |+++++++.|+++++..+.+.+++|++++|.+||||.+|
T Consensus 1 ~~i~IG~~~p~sg~~~~~g~~~~~g~~~a~~~iN~~ggi~-G~~~~l~~~d~~~~~~~~~~~~~~l~~~~v~~iig~~~s 79 (356)
T 3ipc_A 1 MDVVIAVGAPLTGPNAAFGAQIQKGAEQAAKDINAAGGIN-GEQIKIVLGDDVSDPKQGISVANKFVADGVKFVVGHANS 79 (356)
T ss_dssp CCEEEEEEECCSSTTHHHHHHHHHHHHHHHHHHHHTTCBT-TBCEEEEEEECTTCHHHHHHHHHHHHHTTCCEEEECSSH
T ss_pred CeEEEEEeeCCCCcchhhCHHHHHHHHHHHHHHHhcCCCC-CeEEEEEEecCCCCHHHHHHHHHHHHHCCCcEEEcCCCc
Confidence 47999999999854 68889999999999999999994 999999999999999999999999999999999999999
Q ss_pred hhHHHHHHhhhhCCCcEEEeecCCCCCCCCCCCcEEEccCChHHHHHHHHHHH-HHcCCcEEEEEEecCccccchHHHHH
Q 002211 125 VMAHVLSHLANELQVPLLSFTALDPTLSPLQYPFFVQTAPNDLYLMSAIAEMV-SYFGWGEVIAIFNDDDQGRNGVTALG 203 (953)
Q Consensus 125 ~~a~av~~v~~~~~vP~Is~~at~~~ls~~~~p~~fr~~p~d~~~~~ai~~~l-~~~~w~~vaii~~d~~~g~~~~~~l~ 203 (953)
..+.++++++++.++|+|++.++++.+++..+||+||+.|++..++.++++++ +++||++|++|+.+++||+...+.++
T Consensus 80 ~~~~~~~~~~~~~~ip~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~g~~~iaii~~~~~~~~~~~~~~~ 159 (356)
T 3ipc_A 80 GVSIPASEVYAENGILEITPAATNPVFTERGLWNTFRTCGRDDQQGGIAGKYLADHFKDAKVAIIHDKTPYGQGLADETK 159 (356)
T ss_dssp HHHHHHHHHHHTTTCEEEESSCCCGGGGSSCCTTEEESSCCHHHHHHHHHHHHHHHCTTCCEEEEECSSHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCCeEEecCCCCcHhhcCCCCcEEEecCChHHHHHHHHHHHHHhcCCCEEEEEeCCChHHHHHHHHHH
Confidence 99999999999999999999999998888778999999999999999999975 55699999999999999999999999
Q ss_pred HHHHhcCcEEEEEEecCCCCCCChHHHHHHHHHHhcCCceEEEEEcchhhHHHHHHHHHHcCCCCCceEEEEeCcccccc
Q 002211 204 DKLAEIRCKISYKSALPPDQSVTETDVRNELVKVRMMEARVIVVHGYSRTGLMVFDVAQRLGMMDSGYVWIATTWLSTFI 283 (953)
Q Consensus 204 ~~l~~~g~~v~~~~~~~~~~~~~~~d~~~~l~~i~~~~~~vii~~~~~~~~~~~~~~a~~~g~~~~~~~wi~~~~~~~~~ 283 (953)
+++++.|++++....++.+ ..|+...++++++.+||+|++++...++..+++++++.|+..+ |++++++....
T Consensus 160 ~~l~~~g~~v~~~~~~~~~----~~d~~~~~~~l~~~~~d~v~~~~~~~~a~~~~~~~~~~g~~~~---~~~~~~~~~~~ 232 (356)
T 3ipc_A 160 KAANAAGVTEVMYEGVNVG----DKDFSALISKMKEAGVSIIYWGGLHTEAGLIIRQAADQGLKAK---LVSGDGIVSNE 232 (356)
T ss_dssp HHHHHTTCCCSEEEECCTT----CCCCHHHHHHHHHTTCCEEEEESCHHHHHHHHHHHHHHTCCCE---EEECGGGCSHH
T ss_pred HHHHHcCCEEEEEEeeCCC----CCCHHHHHHHHHhcCCCEEEEccCchHHHHHHHHHHHCCCCCc---EEEeccccCHH
Confidence 9999999999888888766 6788999999999999999999999999999999999998653 77766554321
Q ss_pred cCCCCCchhhhhhccceEEEEEecC-CChhhHHHHHHHHhhcCCCCCCCchhhHHhhHHHHHHHHHHHHHhcCCcccccC
Q 002211 284 DSKSPLSLKTAKSILGALTLRQHTP-DSKRRRDFVSRWNTLSNGSIGLNPYGLYAYDTVWMIARALKLFLDQGNTISFSN 362 (953)
Q Consensus 284 ~~~~~~~~~~~~~~~g~~~~~~~~~-~~~~~~~F~~~~~~~~~~~~~~~~~~~~~YDAv~~la~Al~~~~~~~~~~~~~~ 362 (953)
.. .......+|++...++.+ ..|..++|.++|+++ + ..|+.+++.+|||++++++|+++++..
T Consensus 233 ~~-----~~~g~~~~g~~~~~~~~~~~~~~~~~f~~~~~~~-~--~~p~~~~~~~yda~~~~~~al~~ag~~-------- 296 (356)
T 3ipc_A 233 LA-----SIAGDAVEGTLNTFGPDPTLRPENKELVEKFKAA-G--FNPEAYTLYSYAAMQAIAGAAKAAGSV-------- 296 (356)
T ss_dssp HH-----HHHGGGGTTCEEEESCCGGGCGGGHHHHHHHHHT-T--CCCCTTHHHHHHHHHHHHHHHHHHTCC--------
T ss_pred HH-----HHhhHHhCCEEEEecCCCCCChhHHHHHHHHHHc-C--CCcchhHHHHHHHHHHHHHHHHHhCCC--------
Confidence 11 233456889887776654 468899999999998 6 567889999999999999999997321
Q ss_pred CCccCCCCCCcccCCCccccCchHHHHHHHHhcccCCcceeEEEccCCCCCCccEEEEEeecC--CeeeEEEEecCC
Q 002211 363 DTKLNGLGGGTLNLGALSIFDGGKKFLANILQTNMTGLSGPIHFNQDRSLLHPSYDIINVIEH--GYPQQIGYWSNY 437 (953)
Q Consensus 363 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~f~G~tG~v~Fd~~g~~~~~~y~I~~~~~~--~~~~~VG~w~~~ 437 (953)
+++.|.++|++.+|+|++|+++||++|++....+.|++++.+ |.|+.+..|.+.
T Consensus 297 ---------------------~~~~~~~~l~~~~~~g~~G~~~f~~~g~~~~~~~~i~~~~~~~~G~~~~~~~~~~~ 352 (356)
T 3ipc_A 297 ---------------------EPEKVAEALKKGSFPTALGEISFDEKGDPKLPGYVMYEWKKGPDGKFTYIQQGSHH 352 (356)
T ss_dssp ---------------------CHHHHHHHHTTCCBCCTTSSBCBCTTSCBCCCCCEEEEEEECTTSSEEEEEC----
T ss_pred ---------------------CHHHHHHHHHhCCCCCcceeeEECCCCCccCCCeEEEEEEECCCCcEEEEeccccc
Confidence 589999999999999999999999999987789999999965 666999988654
No 20
>4gnr_A ABC transporter substrate-binding protein-branche amino acid transport; amino acid-binding protein, surface-exposed protein; HET: MLY; 1.00A {Streptococcus pneumoniae}
Probab=100.00 E-value=8.2e-40 Score=365.16 Aligned_cols=339 Identities=17% Similarity=0.211 Sum_probs=282.0
Q ss_pred CCCceEEEeEEEecCC---CchhHHHHHHHHHHHHHhcCCCCCCCcEEEEEEecCCCChHHHHHHHHHHHhc-CcEEEEc
Q 002211 45 LKPEVLNVGAIFSFGT---VNGQVSRIAMKAAQDDINSDPRVLGGRKLSITMHDAKFNGFLSIMGALQFMET-DTLAIVG 120 (953)
Q Consensus 45 ~~~~~i~IG~l~~~~~---~~g~~~~~a~~lAve~iN~~g~il~g~~l~l~~~D~~~~~~~a~~~a~~li~~-~v~aiiG 120 (953)
..+++|+||+++|+|. ..|...++|+++|+|+||++||++ |++|+++++|++++|..+++++++|+++ +|.+|+|
T Consensus 3 ~~~~tIkIG~~~plsG~~a~~G~~~~~g~~lAv~~iN~~GGi~-Gr~ielv~~D~~~~p~~a~~~a~~li~~~~v~~i~g 81 (353)
T 4gnr_A 3 VEEKTIKIGFNFEESGSLAAYGTAEQKGAQLAVDEINAAGGID-GKQIEVVDKDNKSETAEAASVTTNLVTQSKVSAVVG 81 (353)
T ss_dssp ---CEEEEEEEECCSSTTHHHHHHHHHHHHHHHHHHHHTTCBT-TBEEEEEEEECTTCHHHHHHHHHHHHHTSCCSEEEC
T ss_pred CCCCeEEEEEEeCCcCchhHhHHHHHHHHHHHHHHHHhcCCCC-CeEEEEEEecCCCCHHHHHHHHHHHHhhCCceEEec
Confidence 3578999999999984 458899999999999999999997 9999999999999999999999999988 7899999
Q ss_pred cCChhhHHHHHHhhhhCCCcEEEeecCCCCCCCCCCCcEEEccCChHHHHHHHHHHHHHcC-CcEEEEEEec-Cccccch
Q 002211 121 PQSAVMAHVLSHLANELQVPLLSFTALDPTLSPLQYPFFVQTAPNDLYLMSAIAEMVSYFG-WGEVIAIFND-DDQGRNG 198 (953)
Q Consensus 121 p~~S~~a~av~~v~~~~~vP~Is~~at~~~ls~~~~p~~fr~~p~d~~~~~ai~~~l~~~~-w~~vaii~~d-~~~g~~~ 198 (953)
|.+|..+.++++++++.++|+|+++++++.++. .++|+||+.|++..++.++++++.+.+ ++++++++.+ ++||++.
T Consensus 82 ~~~s~~~~a~~~~~~~~~vp~i~~~~~~~~l~~-~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~yg~~~ 160 (353)
T 4gnr_A 82 PATSGATAAAVANATKAGVPLISPSATQDGLTK-GQDYLFIGTFQDSFQGKIISNYVSEKLNAKKVVLYTDNASDYAKGI 160 (353)
T ss_dssp CCSHHHHHHHHHHHHHTTCCEEESSCCCTTTTT-TCTTEEECSCCHHHHHHHHHHHHHHTSCCSEEEEEEETTCHHHHHH
T ss_pred cccCcccceehhhhhccCcceEeeccccccccc-CCccccccCCCcHHHHHHHHHHHHHhcCCcEEEEEEcCchHHHHHH
Confidence 999999999999999999999999999998875 458999999999999999999987655 4555555554 4688887
Q ss_pred HHHHHHHHHhcCcEEEEEEecCCCCCCChHHHHHHHHHHhcCCceEEEEEcchhhHHHHHHHHHHcCCCCCceEEEEeCc
Q 002211 199 VTALGDKLAEIRCKISYKSALPPDQSVTETDVRNELVKVRMMEARVIVVHGYSRTGLMVFDVAQRLGMMDSGYVWIATTW 278 (953)
Q Consensus 199 ~~~l~~~l~~~g~~v~~~~~~~~~~~~~~~d~~~~l~~i~~~~~~vii~~~~~~~~~~~~~~a~~~g~~~~~~~wi~~~~ 278 (953)
.+.+.+. .|++|+..+.++++ +.|++.++.++++++||+|++.+.+.++..++++++++|+..+ ++.+++
T Consensus 161 ~~~~~~~---~g~~vv~~~~~~~~----~~d~~~~l~~i~~~~~d~v~~~~~~~~~~~~~~~~~~~g~~~~---~~~~~~ 230 (353)
T 4gnr_A 161 AKSFRES---YKGEIVADETFVAG----DTDFQAALTKMKGKDFDAIVVPGYYNEAGKIVNQARGMGIDKP---IVGGDG 230 (353)
T ss_dssp HHHHHHH---CCSEEEEEEEECTT----CCCCHHHHHHHHTSCCSEEECCSCHHHHHHHHHHHHHTTCCSC---EEECGG
T ss_pred HHHHHHH---cCCEEEEEEeeCCC----CCCHHHHHHHHHhcCCCEEEEecCcHHHHHHHHHHHHcCCCCc---EEEecc
Confidence 7766543 58899999999987 7799999999999999999999999999999999999998654 566554
Q ss_pred ccccccCCCCCchhhhhhccceEEEEEecC---CChhhHHHHHHHHhhcCCCCCCCchhhHHhhHHHHHHHHHHHHHhcC
Q 002211 279 LSTFIDSKSPLSLKTAKSILGALTLRQHTP---DSKRRRDFVSRWNTLSNGSIGLNPYGLYAYDTVWMIARALKLFLDQG 355 (953)
Q Consensus 279 ~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~---~~~~~~~F~~~~~~~~~~~~~~~~~~~~~YDAv~~la~Al~~~~~~~ 355 (953)
+...... .....+..+|.+....+.+ .++..++|.++|+++|+ ..|+.+++++|||++++++|++++.
T Consensus 231 ~~~~~~~----~~~~~~~~~g~~~~~~~~~~~~~~~~~~~f~~~~~~~~g--~~p~~~a~~~Yda~~~la~Ai~~a~--- 301 (353)
T 4gnr_A 231 FNGEEFV----QQATAEKASNIYFISGFSTTVEVSAKAKAFLDAYRAKYN--EEPSTFAALAYDSVHLVANAAKGAK--- 301 (353)
T ss_dssp GCSHHHH----HHHCTTTCCSEEEEESCCSSSSCCHHHHHHHHHHHHHHS--SCCCHHHHHHHHHHHHHHHHHTTCS---
T ss_pred cccchhh----hhhhhhhhcCccccccccCCCCCCHHHHHHHHHHHHHhC--CCCChhHHHHHHHHHHHHHHHhcCC---
Confidence 4432111 0122456778777765543 46788999999999998 7789999999999999999997531
Q ss_pred CcccccCCCccCCCCCCcccCCCccccCchHHHHHHHHhc-ccCCcceeEEEccCCCCCCccEEEEEeecCCeeeEEEEe
Q 002211 356 NTISFSNDTKLNGLGGGTLNLGALSIFDGGKKFLANILQT-NMTGLSGPIHFNQDRSLLHPSYDIINVIEHGYPQQIGYW 434 (953)
Q Consensus 356 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~-~f~G~tG~v~Fd~~g~~~~~~y~I~~~~~~~~~~~VG~w 434 (953)
++++++++|+++ +|+|++|+++||++|++ ...+.|++++++.+ +.+...
T Consensus 302 ----------------------------~~~~v~~aL~~~~~~~g~~G~i~f~~~g~~-~~~~~i~~v~~Gk~-~~~~~v 351 (353)
T 4gnr_A 302 ----------------------------NSGEIKDNLAXTKDFEGVTGQTSFDADHNT-VKTAYMMTMNNGKV-EAAEVV 351 (353)
T ss_dssp ----------------------------SHHHHHHHHHTCCCEEETTEEECCCTTSCC-CCCEEEEEEETTEE-EEEEEE
T ss_pred ----------------------------CHHHHHHHHHhcCCCccCceeEEECCCcCC-cCCeEEEEEECCEE-EEEEEe
Confidence 378899999998 49999999999999986 55677888875544 665543
No 21
>3qel_B Glutamate [NMDA] receptor subunit epsilon-2; ION channel, allosteric modulation, phenylethanolamine, N-glycosylation, extracellular; HET: NAG BMA MAN FUC QEL; 2.60A {Rattus norvegicus} PDB: 3qem_B* 3jpw_A* 3jpy_A*
Probab=100.00 E-value=4.1e-40 Score=366.47 Aligned_cols=340 Identities=15% Similarity=0.235 Sum_probs=262.2
Q ss_pred CceEEEeEEEecCCCchhHHHHHHHHHHHHHhcCCCCCCCcEEEEEE-ecCCCChHHHHHHHHHHHhc-CcEEEEc-cCC
Q 002211 47 PEVLNVGAIFSFGTVNGQVSRIAMKAAQDDINSDPRVLGGRKLSITM-HDAKFNGFLSIMGALQFMET-DTLAIVG-PQS 123 (953)
Q Consensus 47 ~~~i~IG~l~~~~~~~g~~~~~a~~lAve~iN~~g~il~g~~l~l~~-~D~~~~~~~a~~~a~~li~~-~v~aiiG-p~~ 123 (953)
+..+.||++|.-+.. +.+++-|+++.|.-.. ..++..++ ..+.+||..+..++|+++.+ +|.|||| |.+
T Consensus 2 ~~~~~v~~~~~~~~~-----~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~dp~~~~~~~C~~l~~~~V~aiIgg~~s 73 (364)
T 3qel_B 2 PPSIGIAVILVGTSD-----EVAIKDAHEKDDFHHL---SVVPRVELVAMNETDPKSIITRICDLMSDRKIQGVVFADDT 73 (364)
T ss_dssp CCEEEEEEEEESSCC-----HHHHTC---------C---CSEEEEEEEEECCCSHHHHHHHHHHHHHHSCEEEEEEEESS
T ss_pred CCceEEEEEEcccch-----hhhhccccCccccccC---CccceEEEEEecCCCHHHHHHHHHHHHHhCCeEEEEecCCC
Confidence 456899999976653 7889999999985442 24666654 35778999999999999976 7989885 555
Q ss_pred hhhHHH--HHHhhhhCCCcEEEeecCCC-CCCC-CCCCcEEEccCChHHHHHHHHHHHHHcCCcEEEEEEecCccccchH
Q 002211 124 AVMAHV--LSHLANELQVPLLSFTALDP-TLSP-LQYPFFVQTAPNDLYLMSAIAEMVSYFGWGEVIAIFNDDDQGRNGV 199 (953)
Q Consensus 124 S~~a~a--v~~v~~~~~vP~Is~~at~~-~ls~-~~~p~~fr~~p~d~~~~~ai~~~l~~~~w~~vaii~~d~~~g~~~~ 199 (953)
+..+.+ ++.+++.++||+||+++++| .|++ .+||||||+.|+|..|+.++++++++|||++|++||+|+ .+.
T Consensus 74 ~~~a~a~~v~~i~~~~~iP~IS~~at~~~~lsd~~~~p~f~Rt~psd~~q~~ai~~ll~~fgW~~V~iI~~d~----~g~ 149 (364)
T 3qel_B 74 DQEAIAQILDFISAQTLTPILGIHGGSSMIMADKDESSMFFQFGPSIEQQASVMLNIMEEYDWYIFSIVTTYF----PGY 149 (364)
T ss_dssp CCTHHHHHHHHHHHHHTCCEEEEEGGGGSCCSSCCTTCCEEESSCCHHHHHHHHHHHHHHTTCCEEEEEEESC----TTH
T ss_pred CchHHHHHHHHHHhccCCCEEEeecCCCCcCCCcccCceEEEcCCChHHHHHHHHHHHHHCCCeEEEEEEeCC----ccH
Confidence 444555 99999999999999999998 8998 679999999999999999999999999999999999984 344
Q ss_pred HHHHHHHHhc--Cc--EEEEEEecCCCCCCChHHHHHHH-HHHhcCCceEEEEEcchhhHHHHHHHHHHcCCCCCceEEE
Q 002211 200 TALGDKLAEI--RC--KISYKSALPPDQSVTETDVRNEL-VKVRMMEARVIVVHGYSRTGLMVFDVAQRLGMMDSGYVWI 274 (953)
Q Consensus 200 ~~l~~~l~~~--g~--~v~~~~~~~~~~~~~~~d~~~~l-~~i~~~~~~vii~~~~~~~~~~~~~~a~~~g~~~~~~~wi 274 (953)
+.|.+.+++. |. |+.+...++.. .+..++...+ +++++++++|||++++.+.+..++++|.++||++++|+||
T Consensus 150 ~~~~~~l~~~~~~~~ici~~~~~i~~~--~~~~~~~~~l~~~i~~~~a~ViIv~~~~~~~~~ll~~a~~~g~~~~~y~wI 227 (364)
T 3qel_B 150 QDFVNKIRSTIENSFVGWELEEVLLLD--MSLDDGDSKIQNQLKKLQSPIILLYCTKEEATYIFEVANSVGLTGYGYTWI 227 (364)
T ss_dssp HHHHHHHHHHHHTCSSCCEEEEEEEEC--TTSCSSSCHHHHHHTTCCCSEEEEESCHHHHHHHHHHHHTTTCSSTTCEEE
T ss_pred HHHHHHHHHHhhccccceEEEEEEccC--CCcccHHHHHHHHHHccCCcEEEEEcCHHHHHHHHHHHHHcCCCCCCeEEE
Confidence 5666666655 44 77766655443 2345677888 7999999999999999999999999999999999999999
Q ss_pred EeCcccccccCCCCCchhhhhhccceEEEEEecCCChhhHHHHHHHHhhcCCCCCCCchhhHHhhHHHHHHHHHHHHHhc
Q 002211 275 ATTWLSTFIDSKSPLSLKTAKSILGALTLRQHTPDSKRRRDFVSRWNTLSNGSIGLNPYGLYAYDTVWMIARALKLFLDQ 354 (953)
Q Consensus 275 ~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~F~~~~~~~~~~~~~~~~~~~~~YDAv~~la~Al~~~~~~ 354 (953)
+++++....+... .+..+|+++++++. |++ .+.+++||||+++|+|++++..+
T Consensus 228 ~t~~~~~~~~~~~------~~~~~g~~~~~~~~------------W~~---------~~~~~~yDaV~~~A~A~~~~~~~ 280 (364)
T 3qel_B 228 VPSLVAGDTDTVP------SEFPTGLISVSYDE------------WDY---------GLPARVRDGIAIITTAASDMLSE 280 (364)
T ss_dssp ECHHHHCSTTCCC------TTSCTTCEECCBCT------------TTS---------CHHHHHHHHHHHHHHHHHHHHTT
T ss_pred EecccccCccccc------ccCCCceEEEeecc------------chh---------hHHHHHHHHHHHHHHHHHHHHhc
Confidence 9997654433211 24568899887753 331 24678999999999999998764
Q ss_pred CCcccccCCCccCCCCCCcccCCCcc--ccCchHHHHHHHHhcccCCcceeEEEccCCCCCCccEEEEEee-cCCeeeEE
Q 002211 355 GNTISFSNDTKLNGLGGGTLNLGALS--IFDGGKKFLANILQTNMTGLSGPIHFNQDRSLLHPSYDIINVI-EHGYPQQI 431 (953)
Q Consensus 355 ~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~l~~~l~~~~f~G~tG~v~Fd~~g~~~~~~y~I~~~~-~~~~~~~V 431 (953)
.+..+ ....+|.... +|.+|..|+++|++++|+|+ +++||++|++.++.|+|+|++ ++++ ++|
T Consensus 281 ~~~i~-----------~~~~~C~~~~~~~~~~G~~l~~~l~~v~f~Gl--~i~F~~~G~~~~~~~~Iinl~~~~~~-~~V 346 (364)
T 3qel_B 281 HSFIP-----------EPKSSCYNTHEKRIYQSNMLNRYLINVTFEGR--DLSFSEDGYQMHPKLVIILLNKERKW-ERV 346 (364)
T ss_dssp TSCCC-----------CCCSCSTTTTTGGGGCCSTTHHHHTCCEETTE--ECCBCTTSSBSSCCEEEEEECTTSCE-EEE
T ss_pred cCCCC-----------CCCCCCCCCCCCccCCHHHHHHHHhhceEeCc--eEEECCCCCcccceEEEEEEcCCCCc-EEE
Confidence 32221 1233455443 57789999999999999998 899999999999999999998 4566 999
Q ss_pred EEecCCCCccc
Q 002211 432 GYWSNYSGLSV 442 (953)
Q Consensus 432 G~w~~~~gl~~ 442 (953)
|+|++ .||.+
T Consensus 347 G~W~~-~~L~~ 356 (364)
T 3qel_B 347 GKWKD-KSLQM 356 (364)
T ss_dssp EEECS-SCEEE
T ss_pred EEECC-CeEEe
Confidence 99984 34543
No 22
>3td9_A Branched chain amino acid ABC transporter, peripl amino acid-binding protein; leucine binding, structural genomics; HET: MSE PHE; 1.90A {Thermotoga maritima}
Probab=100.00 E-value=1.5e-39 Score=365.11 Aligned_cols=342 Identities=15% Similarity=0.199 Sum_probs=298.0
Q ss_pred CCceEEEeEEEecCCC---chhHHHHHHHHHHHHHhcCCCCCCCcEEEEEEecCCCChHHHHHHHHHHHhc-CcEEEEcc
Q 002211 46 KPEVLNVGAIFSFGTV---NGQVSRIAMKAAQDDINSDPRVLGGRKLSITMHDAKFNGFLSIMGALQFMET-DTLAIVGP 121 (953)
Q Consensus 46 ~~~~i~IG~l~~~~~~---~g~~~~~a~~lAve~iN~~g~il~g~~l~l~~~D~~~~~~~a~~~a~~li~~-~v~aiiGp 121 (953)
.+.+++||+++|+|.. .|.....|+++|++++|+ ++ |+++++++.|+++++..+.+.+++|+++ +|.+||||
T Consensus 13 ~~~~~~iG~~~plsG~~a~~g~~~~~g~~~a~~~in~---i~-G~~i~l~~~D~~~~~~~~~~~~~~l~~~~~v~~iiG~ 88 (366)
T 3td9_A 13 MRKVVKIAVILPMTGGISAFGRMVWEGIQIAHEEKPT---VL-GEEVELVLLDTRSEKTEAANAAARAIDKEKVLAIIGE 88 (366)
T ss_dssp ---CEEEEEEECCSSTTHHHHHHHHHHHHHHHHHCCE---ET-TEEEEEEEEECTTCHHHHHHHHHHHHHTSCCSEEEEC
T ss_pred hcceEEEEEEECCcCcchhcCHHHHHHHHHHHHHhhh---cC-CeEEEEEEecCCCCHHHHHHHHHHHhccCCeEEEEcc
Confidence 4568999999999854 588899999999999999 54 8999999999999999999999999998 59999999
Q ss_pred CChhhHHHHHHhhhhCCCcEEEeecCCCCCCCCCCCcEEEccCChHHHHHHHHHHH-HHcCCcEEEEEEe-cCccccchH
Q 002211 122 QSAVMAHVLSHLANELQVPLLSFTALDPTLSPLQYPFFVQTAPNDLYLMSAIAEMV-SYFGWGEVIAIFN-DDDQGRNGV 199 (953)
Q Consensus 122 ~~S~~a~av~~v~~~~~vP~Is~~at~~~ls~~~~p~~fr~~p~d~~~~~ai~~~l-~~~~w~~vaii~~-d~~~g~~~~ 199 (953)
.+|..+.++++++++.++|+|++.++++.+++ .+||+||+.|++..++.++++++ +++||++|++||. +++||....
T Consensus 89 ~~s~~~~~~~~~~~~~~iP~i~~~~~~~~~~~-~~~~~f~~~~~~~~~~~~~~~~l~~~~g~~~iaii~~~~~~~~~~~~ 167 (366)
T 3td9_A 89 VASAHSLAIAPIAEENKVPMVTPASTNPLVTQ-GRKFVSRVCFIDPFQGAAMAVFAYKNLGAKRVVVFTDVEQDYSVGLS 167 (366)
T ss_dssp SSHHHHHHHHHHHHHTTCCEEESSCCCGGGTT-TCSSEEESSCCHHHHHHHHHHHHHHTSCCCEEEEEEETTCHHHHHHH
T ss_pred CCchhHHHHHHHHHhCCCeEEecCCCCccccC-CCCCEEEEeCCcHHHHHHHHHHHHHhcCCcEEEEEEeCCCcHHHHHH
Confidence 99999999999999999999999988887765 57999999999999999999998 5689999999986 788999999
Q ss_pred HHHHHHHHhcCcEEEEEEecCCCCCCChHHHHHHHHHHhcCCceEEEEEcchhhHHHHHHHHHHcCCCCCceEEEEeCcc
Q 002211 200 TALGDKLAEIRCKISYKSALPPDQSVTETDVRNELVKVRMMEARVIVVHGYSRTGLMVFDVAQRLGMMDSGYVWIATTWL 279 (953)
Q Consensus 200 ~~l~~~l~~~g~~v~~~~~~~~~~~~~~~d~~~~l~~i~~~~~~vii~~~~~~~~~~~~~~a~~~g~~~~~~~wi~~~~~ 279 (953)
+.+.+.+++.|++++... ++.+ ..|+...++++++.++|+|++.+...++..+++++++.|+.. .|++++++
T Consensus 168 ~~~~~~~~~~G~~v~~~~-~~~~----~~d~~~~~~~l~~~~~d~v~~~~~~~~a~~~~~~~~~~g~~~---~~~~~~~~ 239 (366)
T 3td9_A 168 NFFINKFTELGGQVKRVF-FRSG----DQDFSAQLSVAMSFNPDAIYITGYYPEIALISRQARQLGFTG---YILAGDGA 239 (366)
T ss_dssp HHHHHHHHHTTCEEEEEE-ECTT----CCCCHHHHHHHHHTCCSEEEECSCHHHHHHHHHHHHHTTCCS---EEEECGGG
T ss_pred HHHHHHHHHCCCEEEEEE-eCCC----CccHHHHHHHHHhcCCCEEEEccchhHHHHHHHHHHHcCCCc---eEEeeCCc
Confidence 999999999999999888 7766 678889999999999999999999999999999999999864 47777655
Q ss_pred cccccCCCCCchhhhhhccceEEEEEecCC---ChhhHHHHHHHHhhcCCCCCCCchhhHHhhHHHHHHHHHHHHHhcCC
Q 002211 280 STFIDSKSPLSLKTAKSILGALTLRQHTPD---SKRRRDFVSRWNTLSNGSIGLNPYGLYAYDTVWMIARALKLFLDQGN 356 (953)
Q Consensus 280 ~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~---~~~~~~F~~~~~~~~~~~~~~~~~~~~~YDAv~~la~Al~~~~~~~~ 356 (953)
...... ....+..+|++....+.+. .+..++|.++|+++++ ..|+.+++.+|||++++++|+++++..
T Consensus 240 ~~~~~~-----~~~~~~~~g~~~~~~~~~~~~~~~~~~~f~~~~~~~~g--~~p~~~~~~~yda~~~~~~al~~ag~~-- 310 (366)
T 3td9_A 240 DAPELI-----EIGGEAVEGLLFTTHYHPKAASNPVAKKFVEVYKEKYG--KEPAALNALGYDAYMVLLDAIERAGSF-- 310 (366)
T ss_dssp CSTHHH-----HHHGGGGTTCEEEESCCGGGCCSHHHHHHHHHHHHHHS--SCCCHHHHHHHHHHHHHHHHHHHHTSC--
T ss_pred CCHHHH-----HHHhHHhCCeEEEEeeCCCCCCCHHHHHHHHHHHHHHC--CCCchhHHHHHHHHHHHHHHHHHhCCC--
Confidence 432110 2345678999888876554 6789999999999998 678999999999999999999997321
Q ss_pred cccccCCCccCCCCCCcccCCCccccCchHHHHHHHHhcc-cCCcceeEEEccCCCCCCccEEEEEeecCCeeeEEEEec
Q 002211 357 TISFSNDTKLNGLGGGTLNLGALSIFDGGKKFLANILQTN-MTGLSGPIHFNQDRSLLHPSYDIINVIEHGYPQQIGYWS 435 (953)
Q Consensus 357 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~-f~G~tG~v~Fd~~g~~~~~~y~I~~~~~~~~~~~VG~w~ 435 (953)
+++.|.++|++++ |+|++|+++||++|++. ..+.|++++++.+ +.||.|+
T Consensus 311 ---------------------------~~~~~~~~l~~~~~~~g~~G~i~f~~~g~~~-~~~~i~~~~~g~~-~~v~~~~ 361 (366)
T 3td9_A 311 ---------------------------DREKIAEEIRKTRNFNGASGIINIDENGDAI-KSVVVNIVKNGSV-DFEAVIN 361 (366)
T ss_dssp ---------------------------CHHHHHHHHTTCCSEEETTEEECBCTTSCBC-CCEEEEEEETTEE-EEEEEEC
T ss_pred ---------------------------CHHHHHHHHHhCCCCcccceeeEECCCCCcc-CceEEEEEECCEE-EEEEecC
Confidence 5899999999998 99999999999999865 5699999986555 9999998
Q ss_pred CCC
Q 002211 436 NYS 438 (953)
Q Consensus 436 ~~~ 438 (953)
+..
T Consensus 362 ~~~ 364 (366)
T 3td9_A 362 PDD 364 (366)
T ss_dssp GGG
T ss_pred hhh
Confidence 753
No 23
>3i09_A Periplasmic branched-chain amino acid-binding Pro; type I periplasmic binding protein, structural genomics, JOI for structural genomics; HET: MSE CIT; 1.80A {Burkholderia mallei}
Probab=100.00 E-value=4.3e-39 Score=362.47 Aligned_cols=334 Identities=15% Similarity=0.146 Sum_probs=293.6
Q ss_pred CceEEEeEEEecCCC---c-hhHHHHHHHHHHHHHhcCCCCCCCcEEEEEEecCCCChHHHHHHHHHHHh-cCcEEEEcc
Q 002211 47 PEVLNVGAIFSFGTV---N-GQVSRIAMKAAQDDINSDPRVLGGRKLSITMHDAKFNGFLSIMGALQFME-TDTLAIVGP 121 (953)
Q Consensus 47 ~~~i~IG~l~~~~~~---~-g~~~~~a~~lAve~iN~~g~il~g~~l~l~~~D~~~~~~~a~~~a~~li~-~~v~aiiGp 121 (953)
+++|+||+++|++.. + |.....|+++|++++ +||++ |+++++++.|++++|..+++.+++|++ ++|.+||||
T Consensus 2 ~~~i~IG~~~p~sg~~a~~~g~~~~~g~~~A~~~~--~ggi~-G~~i~l~~~D~~~~~~~a~~~~~~li~~~~v~~iiG~ 78 (375)
T 3i09_A 2 ADSVKIGFITDMSGLYADIDGQGGLEAIKMAVADF--GGKVN-GKPIEVVYADHQNKADIAASKAREWMDRGGLDLLVGG 78 (375)
T ss_dssp CSSEEEEEEECSSSTTTTTSHHHHHHHHHHHHHHH--TSEET-TEEEEEEEEECTTCHHHHHHHHHHHHHHSCEEEEEEC
T ss_pred CCCeEEEEEeCCCcccccccCHHHHHHHHHHHHHh--CCCCC-CeEEEEEEecCCCCHHHHHHHHHHHHhhCCCEEEECC
Confidence 468999999999743 4 788999999999999 56775 899999999999999999999999998 699999999
Q ss_pred CChhhHHHHHHhhhhCCCcEEEeecCCCCCCC-CCCCcEEEccCChHHHHHHHHHHHHHcCCcEEEEEEecCccccchHH
Q 002211 122 QSAVMAHVLSHLANELQVPLLSFTALDPTLSP-LQYPFFVQTAPNDLYLMSAIAEMVSYFGWGEVIAIFNDDDQGRNGVT 200 (953)
Q Consensus 122 ~~S~~a~av~~v~~~~~vP~Is~~at~~~ls~-~~~p~~fr~~p~d~~~~~ai~~~l~~~~w~~vaii~~d~~~g~~~~~ 200 (953)
.+|..+.++++++++.++|+|+++++++.+++ ..+||+||+.+++..++.++++++.++||++|++|+.|++||+...+
T Consensus 79 ~~s~~~~a~~~~~~~~~ip~i~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~l~~~g~~~vaii~~~~~~g~~~~~ 158 (375)
T 3i09_A 79 TNSATALSMNQVAAEKKKVYINIGAGADTLTNEQCTPYTVHYAYDTMALAKGTGSAVVKQGGKTWFFLTADYAFGKALEK 158 (375)
T ss_dssp SCHHHHHHHHHHHHHHTCEEEECSCCCGGGGTTTCCTTEEECSCCHHHHHHHHHHHHHHTTCCEEEEEEESSHHHHHHHH
T ss_pred CCcHHHHHHHHHHHHcCceEEEeCCCchhhhcccCCCcEEEeeCChHHHHHHHHHHHHHcCCceEEEEecccHHHHHHHH
Confidence 99999999999999999999999999988887 56899999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhcCcEEEEEEecCCCCCCChHHHHHHHHHHhcCCceEEEEEcchhhHHHHHHHHHHcCCCCCceEEEEeCccc
Q 002211 201 ALGDKLAEIRCKISYKSALPPDQSVTETDVRNELVKVRMMEARVIVVHGYSRTGLMVFDVAQRLGMMDSGYVWIATTWLS 280 (953)
Q Consensus 201 ~l~~~l~~~g~~v~~~~~~~~~~~~~~~d~~~~l~~i~~~~~~vii~~~~~~~~~~~~~~a~~~g~~~~~~~wi~~~~~~ 280 (953)
.+++.+++.|++|+....++.+ ..|+...+.++++.+||+|++.+...++..++++++++|+..+. .+++.+++.
T Consensus 159 ~~~~~~~~~G~~v~~~~~~~~~----~~d~~~~l~~i~~~~~d~v~~~~~~~~~~~~~~~~~~~g~~~~~-~i~g~~~~~ 233 (375)
T 3i09_A 159 NTADVVKANGGKVLGEVRHPLS----ASDFSSFLLQAQSSKAQILGLANAGGDTVNAIKAAKEFGITKTM-KLAALLMFI 233 (375)
T ss_dssp HHHHHHHHTTCEEEEEEEECTT----CSCCHHHHHHHHHTCCSEEEEECCHHHHHHHHHHHHHTTGGGTC-EEEESSCCH
T ss_pred HHHHHHHHcCCEEeeeeeCCCC----CccHHHHHHHHHhCCCCEEEEecCchhHHHHHHHHHHcCCCcCc-eEEecccch
Confidence 9999999999999988888877 67899999999999999999999999999999999999998766 455444433
Q ss_pred ccccCCCCCchhhhhhccceEEEEEecCC-ChhhHHHHHHHHhhcCCCCCCCchhhHHhhHHHHHHHHHHHHHhcCCccc
Q 002211 281 TFIDSKSPLSLKTAKSILGALTLRQHTPD-SKRRRDFVSRWNTLSNGSIGLNPYGLYAYDTVWMIARALKLFLDQGNTIS 359 (953)
Q Consensus 281 ~~~~~~~~~~~~~~~~~~g~~~~~~~~~~-~~~~~~F~~~~~~~~~~~~~~~~~~~~~YDAv~~la~Al~~~~~~~~~~~ 359 (953)
..+. ....+..+|++...++.++ .+..++|.++|+++|+ ..|+.+++.+|||++++++|+++++..
T Consensus 234 ~~~~------~~~~~~~~g~~~~~~~~~~~~~~~~~f~~~~~~~~g--~~p~~~a~~~Yda~~~~~~Al~~ag~~----- 300 (375)
T 3i09_A 234 NDVH------ALGLETTQGLVLTDSWYWNRDQASRQWAQRYFAKMK--KMPSSLQAADYSSVTTYLKAVQAAGST----- 300 (375)
T ss_dssp HHHH------HHCHHHHTTCEEEESCCTTSSHHHHHHHHHHHHHHS--SCCCHHHHHHHHHHHHHHHHHHHHTSC-----
T ss_pred hhHh------hhChhhhCCeeeeeeecCCCCHHHHHHHHHHHHHHC--CCCcHHHHHHHHHHHHHHHHHHHhCCC-----
Confidence 2211 1123568898887766543 6889999999999997 678899999999999999999997321
Q ss_pred ccCCCccCCCCCCcccCCCccccCchHHHHHHHHhcccCCcceeEEEccCCCCCCccEEEEEeecCC
Q 002211 360 FSNDTKLNGLGGGTLNLGALSIFDGGKKFLANILQTNMTGLSGPIHFNQDRSLLHPSYDIINVIEHG 426 (953)
Q Consensus 360 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~f~G~tG~v~Fd~~g~~~~~~y~I~~~~~~~ 426 (953)
+++.|+++|++++|+|++|.+.||++|++. ..+.|+++++++
T Consensus 301 ------------------------~~~~l~~aL~~~~~~~~~G~~~f~~~g~~~-~~~~i~~v~~~~ 342 (375)
T 3i09_A 301 ------------------------DSDKVMAQLKKMKIDDFYAKGYIRTDGSMI-HDMYLMEVKKPS 342 (375)
T ss_dssp ------------------------CHHHHHHHHTTSCEESSSCEEEECTTSBEE-CCEEEEEECCGG
T ss_pred ------------------------CHHHHHHHHhCCCccCCCCceEECCCCCee-eeeEEEEEeccc
Confidence 589999999999999999999999999864 577899987543
No 24
>1usg_A Leucine-specific binding protein; leucine-binding protein, X-RAY crystallography, protein structure, ABC transport systems, transport protein; 1.53A {Escherichia coli} SCOP: c.93.1.1 PDB: 1usi_A* 1usk_A 2lbp_A 1z15_A 1z16_A 1z17_A 1z18_A 2liv_A
Probab=100.00 E-value=6.2e-39 Score=357.08 Aligned_cols=340 Identities=14% Similarity=0.172 Sum_probs=292.7
Q ss_pred ceEEEeEEEecCCC---chhHHHHHHHHHHHHHhcCCCCCCCcEEEEEEecCCCChHHHHHHHHHHHhcCcEEEEccCCh
Q 002211 48 EVLNVGAIFSFGTV---NGQVSRIAMKAAQDDINSDPRVLGGRKLSITMHDAKFNGFLSIMGALQFMETDTLAIVGPQSA 124 (953)
Q Consensus 48 ~~i~IG~l~~~~~~---~g~~~~~a~~lAve~iN~~g~il~g~~l~l~~~D~~~~~~~a~~~a~~li~~~v~aiiGp~~S 124 (953)
++|+||+++|++.. +|.....|+++|+++||++||+ .|++|++++.|+++++..+.+.+++|++++|.+||||.+|
T Consensus 1 ~~i~IG~~~p~~g~~~~~~~~~~~g~~~a~~~iN~~ggi-~G~~l~l~~~d~~~~~~~~~~~~~~l~~~~v~~iig~~~s 79 (346)
T 1usg_A 1 DDIKVAVVGAMSGPIAQWGDMEFNGARQAIKDINAKGGI-KGDKLVGVEYDDACDPKQAVAVANKIVNDGIKYVIGHLCS 79 (346)
T ss_dssp CCEEEEEEECSSSTTHHHHHHHHHHHHHHHHHHHHTTTB-TTBCEEEEEEECTTCHHHHHHHHHHHHHTTCCEEECCSSH
T ss_pred CcEEEEEEeCCCCcchhcCHHHHHHHHHHHHHHHHhCCC-CCeEEEEEEeCCCCCHHHHHHHHHHHHhCCCCEEEcCCCc
Confidence 36999999999754 5778899999999999999999 5999999999999999999999999999999999999999
Q ss_pred hhHHHHHHhhhhCCCcEEEeecCCCCCCCCCCCcEEEccCChHHHHHHHHHHH-HHcCCcEEEEEEecCccccchHHHHH
Q 002211 125 VMAHVLSHLANELQVPLLSFTALDPTLSPLQYPFFVQTAPNDLYLMSAIAEMV-SYFGWGEVIAIFNDDDQGRNGVTALG 203 (953)
Q Consensus 125 ~~a~av~~v~~~~~vP~Is~~at~~~ls~~~~p~~fr~~p~d~~~~~ai~~~l-~~~~w~~vaii~~d~~~g~~~~~~l~ 203 (953)
..+.++++++++.++|+|+++++++.+++..+|++||+.+++..++.++++++ +++||++|++|+.+++||+...+.++
T Consensus 80 ~~~~~~~~~~~~~~ip~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~g~~~i~~i~~~~~~~~~~~~~~~ 159 (346)
T 1usg_A 80 SSTQPASDIYEDEGILMISPGATNPELTQRGYQHIMRTAGLDSSQGPTAAKYILETVKPQRIAIIHDKQQYGEGLARSVQ 159 (346)
T ss_dssp HHHHHHHHHHHHHTCEEEECCCCCGGGGSSCCSSEEECSCCGGGHHHHHHHHHHHTTCCSSEEEEECSSHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCCeEEeeCCCChHHhcCCCCcEEeccCChHHHHHHHHHHHHHhcCCCeEEEEECCCchHHHHHHHHH
Confidence 99999999999999999999888887876558999999999999999999997 45799999999999999999999999
Q ss_pred HHHHhcCcEEEEEEecCCCCCCChHHHHHHHHHHhcCCceEEEEEcchhhHHHHHHHHHHcCCCCCceEEEEeCcccccc
Q 002211 204 DKLAEIRCKISYKSALPPDQSVTETDVRNELVKVRMMEARVIVVHGYSRTGLMVFDVAQRLGMMDSGYVWIATTWLSTFI 283 (953)
Q Consensus 204 ~~l~~~g~~v~~~~~~~~~~~~~~~d~~~~l~~i~~~~~~vii~~~~~~~~~~~~~~a~~~g~~~~~~~wi~~~~~~~~~ 283 (953)
+.+++.|++++....++.+ ..|+...++++++.+||+|++.+....+..+++++++.|+..+ |++++++....
T Consensus 160 ~~l~~~g~~v~~~~~~~~~----~~d~~~~~~~l~~~~~d~i~~~~~~~~a~~~~~~~~~~g~~~~---~~~~~~~~~~~ 232 (346)
T 1usg_A 160 DGLKAANANVVFFDGITAG----EKDFSALIARLKKENIDFVYYGGYYPEMGQMLRQARSVGLKTQ---FMGPEGVGNAS 232 (346)
T ss_dssp HHHHHTTCCEEEEEECCTT----CCCCHHHHHHHHHTTCCEEEEESCHHHHHHHHHHHHHTTCCCE---EEECGGGCCTT
T ss_pred HHHHHcCCEEEEEeccCCC----CcCHHHHHHHHHhcCCCEEEEcCcchHHHHHHHHHHHcCCCCe---EEecCCCCcHH
Confidence 9999999999887777665 4577889999999999999999988889999999999998654 88777654321
Q ss_pred cCCCCCchhhhhhccceEEEEEec-CCChhhHHHHHHHHhhcCCCCCCCchhhHHhhHHHHHHHHHHHHHhcCCcccccC
Q 002211 284 DSKSPLSLKTAKSILGALTLRQHT-PDSKRRRDFVSRWNTLSNGSIGLNPYGLYAYDTVWMIARALKLFLDQGNTISFSN 362 (953)
Q Consensus 284 ~~~~~~~~~~~~~~~g~~~~~~~~-~~~~~~~~F~~~~~~~~~~~~~~~~~~~~~YDAv~~la~Al~~~~~~~~~~~~~~ 362 (953)
. -....+..+|++...++. +..|..++|.++|+++++ ..++.+++.+|||++++++|+++++..
T Consensus 233 -~----~~~~~~~~~g~~~~~~~~~~~~~~~~~f~~~~~~~~~--~~~~~~~~~~yda~~~~~~al~~~g~~-------- 297 (346)
T 1usg_A 233 -L----SNIAGDAAEGMLVTMPKRYDQDPANQGIVDALKADKK--DPSGPYVWITYAAVQSLATALERTGSD-------- 297 (346)
T ss_dssp -H----HHHHGGGGTTCEEEECCCGGGSGGGHHHHHHHHHTTC--CCCCHHHHHHHHHHHHHHHHHHHHCCC--------
T ss_pred -H----HHHhhHhhCCeEEecCCCCCCCHHHHHHHHHHHHHhC--CCCchhHHHHHHHHHHHHHHHHHhCCC--------
Confidence 0 022345678988877653 356788999999999986 567889999999999999999997321
Q ss_pred CCccCCCCCCcccCCCccccCchHHHHHHHHhcccCCcceeEEEccCCCCCCccEEEEEeecCCeeeEE
Q 002211 363 DTKLNGLGGGTLNLGALSIFDGGKKFLANILQTNMTGLSGPIHFNQDRSLLHPSYDIINVIEHGYPQQI 431 (953)
Q Consensus 363 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~f~G~tG~v~Fd~~g~~~~~~y~I~~~~~~~~~~~V 431 (953)
++++|+++|++.+|+|++|+++||++|++....|.|++++.+|.++.|
T Consensus 298 ---------------------~~~~l~~~l~~~~~~g~~G~i~f~~~g~~~~~~~~i~~~~~~G~~~~~ 345 (346)
T 1usg_A 298 ---------------------EPLALVKDLKANGANTVIGPLNWDEKGDLKGFDFGVFQWHADGSSTKA 345 (346)
T ss_dssp ---------------------CHHHHHHHHHHHCEEETTEEECBCTTSSBSSCCCEEEEECTTSCEEEC
T ss_pred ---------------------CHHHHHHHHHhCCCccceeeeEECCCCCccCCceEEEEEecCCEEEec
Confidence 488999999999999999999999999977788999999833433554
No 25
>3n0w_A ABC branched chain amino acid family transporter, periplasmic ligand binding protein...; receptor family ligand binding region; HET: MSE; 1.88A {Burkholderia xenovorans}
Probab=100.00 E-value=6.9e-39 Score=361.34 Aligned_cols=335 Identities=12% Similarity=0.107 Sum_probs=291.2
Q ss_pred CCceEEEeEEEecCC---Cc-hhHHHHHHHHHHHHHhcCCCCCCCcEEEEEEecCCCChHHHHHHHHHHHh-cCcEEEEc
Q 002211 46 KPEVLNVGAIFSFGT---VN-GQVSRIAMKAAQDDINSDPRVLGGRKLSITMHDAKFNGFLSIMGALQFME-TDTLAIVG 120 (953)
Q Consensus 46 ~~~~i~IG~l~~~~~---~~-g~~~~~a~~lAve~iN~~g~il~g~~l~l~~~D~~~~~~~a~~~a~~li~-~~v~aiiG 120 (953)
..++|+||+++|++. .+ |.....|+++|++++ +||++ |++++++++|++++|..+.+.+++|++ ++|.+|||
T Consensus 3 ~~~~i~IG~~~p~sg~~a~~~g~~~~~g~~~a~~~i--~ggi~-G~~i~l~~~D~~~~~~~a~~~~~~li~~~~v~~iiG 79 (379)
T 3n0w_A 3 STGQVTLGVLTDMSSVYADSAGKGSVAAVQLAIEDV--GGKAL-GQPVKLVSADYQMKTDVALSIAREWFDRDGVDAIFD 79 (379)
T ss_dssp ---CCEEEEEECSSSTTTTTSHHHHHHHHHHHHHHT--TTEET-TEECEEEEEECTTCHHHHHHHHHHHHHHSCCCEEEE
T ss_pred CCCcEEEEEEeCCccccccccCHHHHHHHHHHHHHh--cCCCC-CeEEEEEEeCCCCCHHHHHHHHHHHHHhCCceEEEc
Confidence 356899999999974 34 888999999999999 46775 899999999999999999999999998 69999999
Q ss_pred cCChhhHHHHHHhhhhCCCcEEEeecCCCCCCC-CCCCcEEEccCChHHHHHHHHHHHHHcCCcEEEEEEecCccccchH
Q 002211 121 PQSAVMAHVLSHLANELQVPLLSFTALDPTLSP-LQYPFFVQTAPNDLYLMSAIAEMVSYFGWGEVIAIFNDDDQGRNGV 199 (953)
Q Consensus 121 p~~S~~a~av~~v~~~~~vP~Is~~at~~~ls~-~~~p~~fr~~p~d~~~~~ai~~~l~~~~w~~vaii~~d~~~g~~~~ 199 (953)
|.+|..+.++++++++.++|+|+++++++.+++ ..+||+||+.+++..++.++++++.++||++|++|+.|++||+...
T Consensus 80 ~~~s~~~~a~~~~~~~~~ip~i~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~l~~~g~~~vaii~~~~~~g~~~~ 159 (379)
T 3n0w_A 80 VVNSGTALAINNLVKDKKKLAFITAAAADQIGGTECNGYGIGFLYNFTSIVKTVVQAQLAKGYKTWFLMLPDAAYGDLMN 159 (379)
T ss_dssp CCCHHHHHHHHHHHHHHTCEEEECSCCCTTTTTTTCCSSEEECSCCHHHHHHHHHHHHHHTTCCEEEEEEESSHHHHHHH
T ss_pred CCCcHHHHHHHHHHHHcCceEEEcCCCchhhhcccCCCcEEEEeCChHHHHHHHHHHHHHcCCcEEEEEecccchhHHHH
Confidence 999999999999999999999999999999987 5689999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhcCcEEEEEEecCCCCCCChHHHHHHHHHHhcCCceEEEEEcchhhHHHHHHHHHHcCCCCCceEEEEeCcc
Q 002211 200 TALGDKLAEIRCKISYKSALPPDQSVTETDVRNELVKVRMMEARVIVVHGYSRTGLMVFDVAQRLGMMDSGYVWIATTWL 279 (953)
Q Consensus 200 ~~l~~~l~~~g~~v~~~~~~~~~~~~~~~d~~~~l~~i~~~~~~vii~~~~~~~~~~~~~~a~~~g~~~~~~~wi~~~~~ 279 (953)
+.+++.+++.|++|+....++.+ ..|+...+.++++.++|+|++.+.+.++..++++++++|+..+.+ ++.+.++
T Consensus 160 ~~~~~~~~~~G~~v~~~~~~~~~----~~d~~~~l~~i~~~~~d~v~~~~~~~~~~~~~~~~~~~g~~~~~~-~~~~~~~ 234 (379)
T 3n0w_A 160 AAIRRELTAGGGQIVGSVRFPFE----TQDFSSYLLQAKASGAQLIVSTSGGAANINIMKQAREFGLPSKTQ-KVGGMID 234 (379)
T ss_dssp HHHHHHHHHHTCEEEEEEEECTT----CCCCHHHHHHHHHHTCSEEEECCCHHHHHHHHHHHHHTTCSCSSC-EEECCBC
T ss_pred HHHHHHHHHcCCEEEEEEeCCCC----CCCHHHHHHHHHHCCCCEEEEecccchHHHHHHHHHHcCCCCCCc-EEEeccc
Confidence 99999999999999998888877 678999999999999999999999999999999999999976644 4444432
Q ss_pred c-ccccCCCCCchhhhhhccceEEEEEecCC-ChhhHHHHHHHHhhcCCCCCCCchhhHHhhHHHHHHHHHHHHHhcCCc
Q 002211 280 S-TFIDSKSPLSLKTAKSILGALTLRQHTPD-SKRRRDFVSRWNTLSNGSIGLNPYGLYAYDTVWMIARALKLFLDQGNT 357 (953)
Q Consensus 280 ~-~~~~~~~~~~~~~~~~~~g~~~~~~~~~~-~~~~~~F~~~~~~~~~~~~~~~~~~~~~YDAv~~la~Al~~~~~~~~~ 357 (953)
. ..+. ....+..+|++...++.++ .|..++|.++|+++|+ ..|+.+++.+|||++++++|++++++.
T Consensus 235 ~~~~~~------~~~~~~~~g~~~~~~~~~~~~~~~~~f~~~~~~~~g--~~p~~~~~~~Yda~~~~~~Al~~ag~~--- 303 (379)
T 3n0w_A 235 ILTDVK------SAGLRVMQGQEYATSFYWNMDDRTRAFAKRFYAKMG--KMPTNNQAGGYSAALQYLKAVNAIGSK--- 303 (379)
T ss_dssp CHHHHH------HHCHHHHTTCEEEESCCTTSSHHHHHHHHHHHHHHS--SCCCHHHHHHHHHHHHHHHHHHHHTCC---
T ss_pred chHHHH------hhCHHhhCCeEEEeeecCCCCHHHHHHHHHHHHHHC--CCCChHHHHHHHHHHHHHHHHHHhCCC---
Confidence 2 2111 1123568898887776543 6889999999999997 678999999999999999999997321
Q ss_pred ccccCCCccCCCCCCcccCCCccccCchHHHHHHHHhcccCCccee-EEEccCCCCCCccEEEEEeecCC
Q 002211 358 ISFSNDTKLNGLGGGTLNLGALSIFDGGKKFLANILQTNMTGLSGP-IHFNQDRSLLHPSYDIINVIEHG 426 (953)
Q Consensus 358 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~f~G~tG~-v~Fd~~g~~~~~~y~I~~~~~~~ 426 (953)
+++.|+++|++++|+|+.|. +.||++|++ ...+.|+++++++
T Consensus 304 --------------------------~~~~v~~aL~~~~~~~~~G~~~~f~~~g~~-~~~~~i~~~~~~~ 346 (379)
T 3n0w_A 304 --------------------------DPQKVFAYLKTIKFDDAVTRHGTLRPGGRL-VRDMYLVRAKKPE 346 (379)
T ss_dssp --------------------------CHHHHHHHHTTCCBCSSSCCSBEECTTSBE-ECCEEEEEECCGG
T ss_pred --------------------------CHHHHHHHHhcCCccccCCCceeECCCCCc-ccceEEEEEEchh
Confidence 58999999999999999986 999999985 5778899997543
No 26
>3hut_A Putative branched-chain amino acid ABC transporter; extracellular ligand-binding receptor,transport protein; 1.93A {Rhodospirillum rubrum atcc 11170}
Probab=100.00 E-value=1.1e-38 Score=356.91 Aligned_cols=345 Identities=15% Similarity=0.127 Sum_probs=298.1
Q ss_pred CceEEEeEEEecCCC---chhHHHHHHHHHHHHHhcCCCCCCCcEEEEEEecCCCChHHHHHHHHHHH-hcCcEEEEccC
Q 002211 47 PEVLNVGAIFSFGTV---NGQVSRIAMKAAQDDINSDPRVLGGRKLSITMHDAKFNGFLSIMGALQFM-ETDTLAIVGPQ 122 (953)
Q Consensus 47 ~~~i~IG~l~~~~~~---~g~~~~~a~~lAve~iN~~g~il~g~~l~l~~~D~~~~~~~a~~~a~~li-~~~v~aiiGp~ 122 (953)
.++|+||+++|++.. +|.....|+++|++++|++||++ |+++++++.|+++++..+.+.+++|+ +++|.+||||.
T Consensus 2 ~~~i~IG~i~p~sg~~~~~~~~~~~g~~~a~~~~n~~ggi~-G~~~~l~~~d~~~~~~~~~~~~~~l~~~~~v~~iig~~ 80 (358)
T 3hut_A 2 SLALLLGYELPLTGANAAYGRVFQEAARLQLDRFNAAGGVG-GRPVDILYADSRDDADQARTIARAFVDDPRVVGVLGDF 80 (358)
T ss_dssp -CCEEEEEEECSSSTTHHHHHHHHHHHHHHHHHHHHTTTBT-TBCEEEEEEECTTCHHHHHHHHHHHHHCTTEEEEEECS
T ss_pred CccEEEEEEeccCCchhhcCHHHHHHHHHHHHHHHhhCCCC-CeEEEEEEecCCCCHHHHHHHHHHHhccCCcEEEEcCC
Confidence 368999999999744 57889999999999999999997 89999999999999999999999999 66999999999
Q ss_pred ChhhHHHHHHhhhhCCCcEEEeecCCCCCCCCCCCcEEEccCChHHHHHHHHHHHHHcCCcEEEEEEecCccccchHHHH
Q 002211 123 SAVMAHVLSHLANELQVPLLSFTALDPTLSPLQYPFFVQTAPNDLYLMSAIAEMVSYFGWGEVIAIFNDDDQGRNGVTAL 202 (953)
Q Consensus 123 ~S~~a~av~~v~~~~~vP~Is~~at~~~ls~~~~p~~fr~~p~d~~~~~ai~~~l~~~~w~~vaii~~d~~~g~~~~~~l 202 (953)
+|..+.++++++++.++|+|+++++++.+++.. ||+||+.+++..++.++++++.+.||++|++|+.+++||+...+.+
T Consensus 81 ~s~~~~~~~~~~~~~~iP~v~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~l~~~g~~~ia~i~~~~~~~~~~~~~~ 159 (358)
T 3hut_A 81 SSTVSMAAGSIYGKEGMPQLSPTAAHPDYIKIS-PWQFRAITTPAFEGPNNAAWMIGDGFTSVAVIGVTTDWGLSSAQAF 159 (358)
T ss_dssp SHHHHHHHHHHHHHHTCCEEESSCCCGGGTTSC-TTEEESSCCGGGHHHHHHHHHHHTTCCEEEEEEESSHHHHHHHHHH
T ss_pred CcHHHHHHHHHHHHCCCcEEecCCCCcccccCC-CeEEEecCChHHHHHHHHHHHHHcCCCEEEEEecCcHHHHHHHHHH
Confidence 999999999999999999999998888887654 9999999999999999999988889999999999999999999999
Q ss_pred HHHHHhcCcEEEEEEecCCCCCCChHHHHHHHHHHhcCCceEEEEEcchhhHHHHHHHHHHcCCCCCceEEEEeCccccc
Q 002211 203 GDKLAEIRCKISYKSALPPDQSVTETDVRNELVKVRMMEARVIVVHGYSRTGLMVFDVAQRLGMMDSGYVWIATTWLSTF 282 (953)
Q Consensus 203 ~~~l~~~g~~v~~~~~~~~~~~~~~~d~~~~l~~i~~~~~~vii~~~~~~~~~~~~~~a~~~g~~~~~~~wi~~~~~~~~ 282 (953)
++++++.|++++....++.+ ..++...++++++.+||+|++.+....+..+++++++.|+..+ |++.+++...
T Consensus 160 ~~~l~~~g~~v~~~~~~~~~----~~~~~~~~~~l~~~~~d~i~~~~~~~~a~~~~~~~~~~g~~~p---~~~~~~~~~~ 232 (358)
T 3hut_A 160 RKAFELRGGAVVVNEEVPPG----NRRFDDVIDEIEDEAPQAIYLAMAYEDAAPFLRALRARGSALP---VYGSSALYSP 232 (358)
T ss_dssp HHHHHHTTCEEEEEEEECTT----CCCCHHHHHHHHHHCCSEEEEESCHHHHHHHHHHHHHTTCCCC---EEECGGGCSH
T ss_pred HHHHHHcCCEEEEEEecCCC----CccHHHHHHHHHhcCCCEEEEccCchHHHHHHHHHHHcCCCCc---EEecCcccCH
Confidence 99999999999988778766 6678889999999999999999999899999999999998654 7777655432
Q ss_pred ccCCCCCchhhhhhccceEEEEEecC--CChhhHHHHHHHHhhcCCCCCCCchhhHHhhHHHHHHHHHHHHHhcCCcccc
Q 002211 283 IDSKSPLSLKTAKSILGALTLRQHTP--DSKRRRDFVSRWNTLSNGSIGLNPYGLYAYDTVWMIARALKLFLDQGNTISF 360 (953)
Q Consensus 283 ~~~~~~~~~~~~~~~~g~~~~~~~~~--~~~~~~~F~~~~~~~~~~~~~~~~~~~~~YDAv~~la~Al~~~~~~~~~~~~ 360 (953)
... ....+..+|++...++.+ ..|..++|.++|+++++ ..|+.+++.+|||++++++|+++++..
T Consensus 233 ~~~-----~~~~~~~~g~~~~~~~~~~~~~~~~~~f~~~~~~~~~--~~p~~~~~~~yda~~~~~~al~~ag~~------ 299 (358)
T 3hut_A 233 KFI-----DLGGPAVEGVRLATAFVLGASDPVVVEFVSAYETLYG--AIPTLFAAHGYDAVGIMLAAVGRAGPE------ 299 (358)
T ss_dssp HHH-----HHHGGGGTTCEEEESCCTTCCSHHHHHHHHHHHHHHS--SCCCHHHHHHHHHHHHHHHHHHHHCTT------
T ss_pred HHH-----HHhHHhhCCeEEEeccCCCCCCHHHHHHHHHHHHHHC--CCCCHHHHHHHHHHHHHHHHHHHhCCC------
Confidence 111 233467899988887765 46889999999999997 578999999999999999999997322
Q ss_pred cCCCccCCCCCCcccCCCccccCchHH-HHHHHHhc-ccCCcceeEEEccCCCCCCccEEEEEeecCCeeeEEEEecCC
Q 002211 361 SNDTKLNGLGGGTLNLGALSIFDGGKK-FLANILQT-NMTGLSGPIHFNQDRSLLHPSYDIINVIEHGYPQQIGYWSNY 437 (953)
Q Consensus 361 ~~~~~~~~~~~~~~~~~~~~~~~~~~~-l~~~l~~~-~f~G~tG~v~Fd~~g~~~~~~y~I~~~~~~~~~~~VG~w~~~ 437 (953)
++++ |.++|+++ +|+|++|+++||++|++....+.|++++++.+ +.+..+.+.
T Consensus 300 -----------------------~~~~~~~~~l~~~~~~~g~~G~~~f~~~g~~~~~~~~i~~~~~G~~-~~~~~~~~~ 354 (358)
T 3hut_A 300 -----------------------VTRESLRDALAATDRYAGVTGITRFDPETRETTKILTRLVVREGDF-RVIDREGHH 354 (358)
T ss_dssp -----------------------CCHHHHHHHHHTCCSEEETTEEEEECTTTCCEEECCEEEEEETTEE-EEC------
T ss_pred -----------------------ChHHHHHHHHHhcCCCcCCceeeEECCCCCcCCCceEEEEEECCEE-EEecccccc
Confidence 3677 99999999 89999999999999986578899999985444 777666543
No 27
>3lkb_A Probable branched-chain amino acid ABC transporter, amino acid binding protein; branched amino acid, PSI-II, NYSGXRC, structural genomics; 2.40A {Thermus thermophilus}
Probab=100.00 E-value=4.3e-39 Score=364.81 Aligned_cols=353 Identities=10% Similarity=0.002 Sum_probs=301.1
Q ss_pred CCceEEEeEEEecCCC---chhHHHHHHHHHHHHHhcCCCCCCCcEEEEEEecCCCChHHHHHHHHHHHhc-CcEEEEcc
Q 002211 46 KPEVLNVGAIFSFGTV---NGQVSRIAMKAAQDDINSDPRVLGGRKLSITMHDAKFNGFLSIMGALQFMET-DTLAIVGP 121 (953)
Q Consensus 46 ~~~~i~IG~l~~~~~~---~g~~~~~a~~lAve~iN~~g~il~g~~l~l~~~D~~~~~~~a~~~a~~li~~-~v~aiiGp 121 (953)
++++|+||+++|++.. .|.....|+++|++++|++||++ |+++++++.|+++++..+.+.+++|+++ +|.+|||
T Consensus 4 a~~~i~IG~~~p~sG~~a~~g~~~~~g~~~a~~~iN~~ggi~-G~~i~l~~~D~~~~~~~~~~~~~~li~~~~V~~iig- 81 (392)
T 3lkb_A 4 GQQQVTLFWSGAITGPTSDAGAPYGAAVEDYCKWANERKLVP-GVVFNCVVRDDQYNNANTQRFFEEAVDRFKIPVFLS- 81 (392)
T ss_dssp CCEEEEEEEEECSSSTTHHHHHHHHHHHHHHHHHHHHHTSST-TEEEEEEEEECTTCHHHHHHHHHHHHHTTCCSCEEE-
T ss_pred cCCceEEEEEecccCchhhcChhHHHHHHHHHHHHHhcCCcC-CeEeEEEEecCCCCHHHHHHHHHHHHhhcCcEEEEe-
Confidence 4679999999999844 57889999999999999999997 8999999999999999999999999997 9999999
Q ss_pred CChhhHHHHHHhhhhCCCcEEEeecCCCCCCC-CCCCcEEEccCChHHHHHHHHHHHHH-cCCcEEEEEEecCccccchH
Q 002211 122 QSAVMAHVLSHLANELQVPLLSFTALDPTLSP-LQYPFFVQTAPNDLYLMSAIAEMVSY-FGWGEVIAIFNDDDQGRNGV 199 (953)
Q Consensus 122 ~~S~~a~av~~v~~~~~vP~Is~~at~~~ls~-~~~p~~fr~~p~d~~~~~ai~~~l~~-~~w~~vaii~~d~~~g~~~~ 199 (953)
.+|..+.++++++++.+||+|+++++++ +.+ ..+||+||+.+++..++.++++++.+ +||++|++|+.+++||+...
T Consensus 82 ~~s~~~~~~~~~~~~~~iP~i~~~~~~~-~~~~~~~~~~f~~~~~~~~~~~~~~~~l~~~~g~~~iaii~~~~~~g~~~~ 160 (392)
T 3lkb_A 82 YATGANLQLKPLIQELRIPTIPASMHIE-LIDPPNNDYIFLPTTSYSEQVVALLEYIAREKKGAKVALVVHPSPFGRAPV 160 (392)
T ss_dssp CCHHHHHHHHHHHHHHTCCEEESCCCGG-GGSSSSCTTBCEEECCHHHHHHHHHHHHHHHCTTCEEEEEECSSHHHHTTH
T ss_pred CCcHHHHHHHHHHHhCCceEEecccChh-hccCCCCCceEecCCChHHHHHHHHHHHHHhCCCCEEEEEEeCCchhhhHH
Confidence 6899999999999999999999866544 444 56899999999999999999999876 69999999999999999999
Q ss_pred HHHHHHHHhcCcEEEEEEecCCCCCCChHHHHHHHHHHhcCCceEEEEEcchhhHHHHHHHHHHcCCCCCceEEEEeCcc
Q 002211 200 TALGDKLAEIRCKISYKSALPPDQSVTETDVRNELVKVRMMEARVIVVHGYSRTGLMVFDVAQRLGMMDSGYVWIATTWL 279 (953)
Q Consensus 200 ~~l~~~l~~~g~~v~~~~~~~~~~~~~~~d~~~~l~~i~~~~~~vii~~~~~~~~~~~~~~a~~~g~~~~~~~wi~~~~~ 279 (953)
+.+++++++.|++++....++.+ ..|+...++++++.+||+|++.+...++..++++++++|+.. .|+.++++
T Consensus 161 ~~~~~~l~~~G~~v~~~~~~~~~----~~d~~~~~~~l~~~~~dav~~~~~~~~a~~~~~~~~~~g~~~---~~~~~~~~ 233 (392)
T 3lkb_A 161 EDARKAARELGLQIVDVQEVGSG----NLDNTALLKRFEQAGVEYVVHQNVAGPVANILKDAKRLGLKM---RHLGAHYT 233 (392)
T ss_dssp HHHHHHHHHHTCEEEEEEECCTT----CCCCHHHHHHHHHTTCCEEEEESCHHHHHHHHHHHHHTTCCC---EEEECGGG
T ss_pred HHHHHHHHHcCCeEEEEEeeCCC----CcCHHHHHHHHHhcCCCEEEEecCcchHHHHHHHHHHcCCCc---eEEEecCc
Confidence 99999999999999988888876 678899999999999999999999999999999999999864 36666554
Q ss_pred cccccCCCCCchhhhhhccceEEEEEecCC--ChhhHHHHHHHHhhcCCCCCCCch----hhHHhhHHHHHHHHHHHHHh
Q 002211 280 STFIDSKSPLSLKTAKSILGALTLRQHTPD--SKRRRDFVSRWNTLSNGSIGLNPY----GLYAYDTVWMIARALKLFLD 353 (953)
Q Consensus 280 ~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~--~~~~~~F~~~~~~~~~~~~~~~~~----~~~~YDAv~~la~Al~~~~~ 353 (953)
...... .......+|++...++.+. .+..++|.++|+++|+ ..|..+ ++.+|||++++++|++++..
T Consensus 234 ~~~~~~-----~~~g~~~~g~~~~~~~~~~~~~~~~~~f~~~~~~~~~--~~p~~~~~~~~~~~yda~~~~~~al~~ag~ 306 (392)
T 3lkb_A 234 GGPDLI-----ALAGDAAEGFLWATSFYMAHEDTPGIRLQKEIGRKYG--RPENFIESVNYTNGMLAAAIAVEAIRRAQE 306 (392)
T ss_dssp CSHHHH-----HHHGGGGTTCEEEESBCCTTSCCHHHHHHHHHHHHTT--CCHHHHTCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ccHHHH-----HhhhhhhcCeEEEEeecCCCCCchhHHHHHHHHHHhC--CCcccccchhHHHHHHHHHHHHHHHHHhhc
Confidence 322111 2344568999888876442 4567899999999987 444444 78999999999999999865
Q ss_pred cCCcccccCCCccCCCCCCcccCCCccccCchHHHHHHHHhcc----cC-------CcceeEEEccCCCCCCccEEEEEe
Q 002211 354 QGNTISFSNDTKLNGLGGGTLNLGALSIFDGGKKFLANILQTN----MT-------GLSGPIHFNQDRSLLHPSYDIINV 422 (953)
Q Consensus 354 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~----f~-------G~tG~v~Fd~~g~~~~~~y~I~~~ 422 (953)
.++. .+++.|+++|++++ |+ |++|+++||++|++....+.|+++
T Consensus 307 ~~~~-------------------------~~~~~v~~aL~~~~~~~~~~~~~~~~~G~~G~i~f~~~~~~~~~~~~i~~~ 361 (392)
T 3lkb_A 307 RFKR-------------------------ITNETVYQAIVGMNGPNAFKPGFAVSTKQGVEIDFTKSEHTGAEGLRILEA 361 (392)
T ss_dssp HHSS-------------------------CCHHHHHHHHHTCCGGGCBCCSSBCCCSSSCSBCCCSSCCEEECCBEEEEE
T ss_pred cCCC-------------------------CCHHHHHHHHHhcCCCcCcccccccccccceeeEeCCCCcCCcccEEEEEE
Confidence 3111 15899999999997 98 999999999988866778899999
Q ss_pred ecCCeeeEEEEecCCCCcc
Q 002211 423 IEHGYPQQIGYWSNYSGLS 441 (953)
Q Consensus 423 ~~~~~~~~VG~w~~~~gl~ 441 (953)
+++++ +.||.|....++.
T Consensus 362 ~~g~~-~~v~~w~~~~~~~ 379 (392)
T 3lkb_A 362 KGGRF-VPVTEPFTSALFR 379 (392)
T ss_dssp ETTEE-EECSCCBCCHHHH
T ss_pred eCCEE-EEeccccchhHHH
Confidence 76666 9999998776544
No 28
>3eaf_A ABC transporter, substrate binding protein; PSI2, NYSGXRC, substrate binding P structural genomics, protein structure initiative; 2.00A {Aeropyrum pernix}
Probab=100.00 E-value=1.8e-38 Score=359.34 Aligned_cols=351 Identities=15% Similarity=0.169 Sum_probs=293.4
Q ss_pred CceEEEeEEEecCCC---chhHHHHHHHHHHHHHhcCCCCC-CCc--EEEEEEecCCCChHHHHHHHHHHH-hcCcEEEE
Q 002211 47 PEVLNVGAIFSFGTV---NGQVSRIAMKAAQDDINSDPRVL-GGR--KLSITMHDAKFNGFLSIMGALQFM-ETDTLAIV 119 (953)
Q Consensus 47 ~~~i~IG~l~~~~~~---~g~~~~~a~~lAve~iN~~g~il-~g~--~l~l~~~D~~~~~~~a~~~a~~li-~~~v~aii 119 (953)
.++|+||+++|++.. .|.....|+++|+++||++||++ +|+ +|++++.|+++++..+.+.+++|+ +++|.+||
T Consensus 2 ~~~i~IG~~~p~sG~~a~~g~~~~~g~~~a~~~iN~~ggi~~~G~~~~l~l~~~D~~~~~~~a~~~~~~li~~~~V~~ii 81 (391)
T 3eaf_A 2 SLTINVGLLVDETGPTSDVGKGYSLGAELAFKYFNEKGIYTKDGVRVNINYIKRDYAYNPTTAEEYYREFRDRYGVIAII 81 (391)
T ss_dssp CEEEEEEEEECSSSTTHHHHHHHHHHHHHHHHHHHHHCEECTTCCEEEEEEEEEECTTCHHHHHHHHHHHHHTTCCSEEE
T ss_pred CccEEEEEEEcCCCchhhhhHHHHHHHHHHHHHHHHcCCCccCCeEEEEEEEEeCCCCCHHHHHHHHHHHHhhcCcEEEE
Confidence 368999999999854 57888999999999999999994 599 999999999999999999999999 56999999
Q ss_pred ccCChhhHHHHHHhhhhCCCcEEEeecCCCCCCCCCCCcEEEccCChHHHHHHHHHHHHH-cCCcEEEEEEe-cCccccc
Q 002211 120 GPQSAVMAHVLSHLANELQVPLLSFTALDPTLSPLQYPFFVQTAPNDLYLMSAIAEMVSY-FGWGEVIAIFN-DDDQGRN 197 (953)
Q Consensus 120 Gp~~S~~a~av~~v~~~~~vP~Is~~at~~~ls~~~~p~~fr~~p~d~~~~~ai~~~l~~-~~w~~vaii~~-d~~~g~~ 197 (953)
| .+|..+.++++++++.++|+|+++++++ +. .+||+||+.|++..++.++++++.+ +||++|++|+. |++||+.
T Consensus 82 G-~~s~~~~a~~~~~~~~~iP~i~~~~~~~-~~--~~~~~f~~~~~~~~~~~~~~~~l~~~~g~~~iaii~~~~~~~g~~ 157 (391)
T 3eaf_A 82 G-WGTADTEKLSDQVDTDKITYISASYSAK-LL--VKPFNFYPAPDYSTQACSGLAFLASEFGQGKLALAYDSKVAYSRS 157 (391)
T ss_dssp E-CCHHHHHHHHHHHHHHTCEEEESCCCGG-GT--TSTTEECSSCCHHHHHHHHHHHHHHHHCSEEEEEEECTTCHHHHT
T ss_pred E-cCcHHHHHHHHHHhhcCCeEEecccchh-hc--CCCcEEEeCCCHHHHHHHHHHHHHHhcCCCEEEEEEecCChhHHH
Confidence 9 6899999999999999999999876654 33 6799999999999999999999877 69999999999 9999999
Q ss_pred hHHHHHHHHHhcCcEEEEEEecCCCCCCChHHHHHHHHH--HhcCCceEEEEEcchhhHHHHHHHHHHcCCCCCceEEEE
Q 002211 198 GVTALGDKLAEIRCKISYKSALPPDQSVTETDVRNELVK--VRMMEARVIVVHGYSRTGLMVFDVAQRLGMMDSGYVWIA 275 (953)
Q Consensus 198 ~~~~l~~~l~~~g~~v~~~~~~~~~~~~~~~d~~~~l~~--i~~~~~~vii~~~~~~~~~~~~~~a~~~g~~~~~~~wi~ 275 (953)
..+.+++++++.|++|+....++.+ ..|+...+.+ +++.+||+|++.+...++..++++++++|+..+ ++.
T Consensus 158 ~~~~~~~~l~~~G~~v~~~~~~~~~----~~d~~~~~~~~~l~~~~~dav~~~~~~~~~~~~~~~~~~~g~~~~---~~~ 230 (391)
T 3eaf_A 158 PIGAIKKAAPSLGLQVVGDYDLPLR----ATEADAERIAREMLAADPDYVWCGNTISSCSLLGRAMAKVGLDAF---LLT 230 (391)
T ss_dssp THHHHHHHTGGGTEEEEEEEECCTT----CCHHHHHHHHHHHHTTCCSEEEECSCHHHHHHHHHHHHHHTCCCE---EEE
T ss_pred HHHHHHHHHHHcCCceeeeeccCCC----CcCHHHHHHHHHHHHcCCCEEEEecCcHHHHHHHHHHHHCCCCce---EEE
Confidence 9999999999999999998888876 6799999999 999999999999999999999999999998653 555
Q ss_pred eCcccccccCCCCCchhhhhhccc-eEEEEEec-----CCChhhHHHHHHHHhhcC-CCCCCCchhhHHhhHHHHHHHHH
Q 002211 276 TTWLSTFIDSKSPLSLKTAKSILG-ALTLRQHT-----PDSKRRRDFVSRWNTLSN-GSIGLNPYGLYAYDTVWMIARAL 348 (953)
Q Consensus 276 ~~~~~~~~~~~~~~~~~~~~~~~g-~~~~~~~~-----~~~~~~~~F~~~~~~~~~-~~~~~~~~~~~~YDAv~~la~Al 348 (953)
+++.... .. -....+..+| ++...++. ++.+. .+|.++|+++|+ .....+.+++.+|||++++++|+
T Consensus 231 ~~~~~~~-~~----~~~~g~~~~g~~~~~~~~~~~~~~~~~~~-~~f~~~~~~~~~~~~p~~~~~~~~~yda~~~l~~Al 304 (391)
T 3eaf_A 231 NVWGFDE-RS----PQLIGEGGYGKVFGISPFIYPMFGQDVEG-IQTIFEAARMNGVSEDQINLRVVQGFVNVWLLIKAI 304 (391)
T ss_dssp CGGGCST-TH----HHHHCGGGTTSEEEEESBCCGGGCTTCHH-HHHHHHHHHHTTCCGGGCCHHHHHHHHHHHHHHHHH
T ss_pred eccCCCH-HH----HHhhhhhccCcEEEEEEecCcccCCCCch-hHHHHHHHHHhCCCCcccccHHHHHHHHHHHHHHHH
Confidence 5443221 11 0234456899 87777665 34555 679999999986 22223589999999999999999
Q ss_pred HHHHhcCCcccccCCCccCCCCCCcccCCCccccCchHHHHHHHHhcccC--Ccce-eEEEccCCCCCCccEEEEEeecC
Q 002211 349 KLFLDQGNTISFSNDTKLNGLGGGTLNLGALSIFDGGKKFLANILQTNMT--GLSG-PIHFNQDRSLLHPSYDIINVIEH 425 (953)
Q Consensus 349 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~f~--G~tG-~v~Fd~~g~~~~~~y~I~~~~~~ 425 (953)
+++...+.. ..+++.|.++|++.+|+ |++| +++||++|++....+.|+++..+
T Consensus 305 ~~a~~~g~~------------------------~~~~~~v~~aL~~~~~~~~G~~G~~i~f~~~~~~~~~~~~i~~~~~~ 360 (391)
T 3eaf_A 305 ESVTSQDLQ------------------------ERGGEALKEALEANTFDLGGITADTIDYEPGFHLAYRKVFIIKLGEN 360 (391)
T ss_dssp TTSCHHHHH------------------------HHTHHHHHHHHHHCCBCSTTCBSSCBCCBTTBCCCCCCEEEEEECTT
T ss_pred HHHHhcCCC------------------------CCCHHHHHHHHHhCCCCCCCccccceeeCCCCCCcceEEEEEEEecC
Confidence 986211000 01489999999998898 9999 99999876667788999999445
Q ss_pred CeeeEEEEecCCC
Q 002211 426 GYPQQIGYWSNYS 438 (953)
Q Consensus 426 ~~~~~VG~w~~~~ 438 (953)
|.++.|+.|....
T Consensus 361 G~~~~v~~~~~~~ 373 (391)
T 3eaf_A 361 GELQLMGKFEAPS 373 (391)
T ss_dssp SSEEEEEEECCCT
T ss_pred CEEEEeeeecCcc
Confidence 5559999997643
No 29
>3n0x_A Possible substrate binding protein of ABC transpo system; receptor family ligand binding region, structural genomics; HET: MSE; 1.50A {Rhodopseudomonas palustris} PDB: 3nnd_B
Probab=100.00 E-value=5.1e-39 Score=361.47 Aligned_cols=333 Identities=14% Similarity=0.098 Sum_probs=277.8
Q ss_pred CceEEEeEEEecCCC---chhHHHHHHHHHHHHHhc-CCCCCCCcEEEEEEecCCCChHHHHHHHHHHHhc-CcEEEEcc
Q 002211 47 PEVLNVGAIFSFGTV---NGQVSRIAMKAAQDDINS-DPRVLGGRKLSITMHDAKFNGFLSIMGALQFMET-DTLAIVGP 121 (953)
Q Consensus 47 ~~~i~IG~l~~~~~~---~g~~~~~a~~lAve~iN~-~g~il~g~~l~l~~~D~~~~~~~a~~~a~~li~~-~v~aiiGp 121 (953)
.++|+||+++|++.. .|...+.|+++|++++|+ .||++ |++|+++++|++++|..++.++++|+++ +|.+||||
T Consensus 2 ~~~i~IG~~~plsG~~a~~g~~~~~g~~lA~~~iN~~~ggi~-G~~i~l~~~D~~~~~~~a~~~~~~li~~~~v~aiiG~ 80 (374)
T 3n0x_A 2 ADDLKIALIYGKTGPLEAYAKQTETGLMMGLEYATKGTMTLD-GRKIVVITKDDQSKPDLSKAALAEAYQDDGADIAIGT 80 (374)
T ss_dssp --CEEEEEEECCSSTTHHHHHHHHHHHHHHHHHHTTTCCEET-TEEEEEEEEECTTCHHHHHHHHHHHHHTSCCSEEEEC
T ss_pred CCCEEEEEecCCCCchhhhCHHHHHHHHHHHHHHhccCCCcC-CEEEEEEEecCCCCHHHHHHHHHHHHHhCCceEEEcC
Confidence 368999999999854 588999999999999998 67885 8999999999999999999999999985 99999999
Q ss_pred CChhhHHHHHHhhhhCCCcEEEeecCCCCCCC-CCCCcEEEccCChHHHHHHHHHHHHHcCCcEEEEEEecCccccchHH
Q 002211 122 QSAVMAHVLSHLANELQVPLLSFTALDPTLSP-LQYPFFVQTAPNDLYLMSAIAEMVSYFGWGEVIAIFNDDDQGRNGVT 200 (953)
Q Consensus 122 ~~S~~a~av~~v~~~~~vP~Is~~at~~~ls~-~~~p~~fr~~p~d~~~~~ai~~~l~~~~w~~vaii~~d~~~g~~~~~ 200 (953)
.+|..+.+++++++++++|+|++.++++.+++ ..+||+||+.|++..++.+++.++++++| +|++|+.|++||+...+
T Consensus 81 ~~s~~~~a~~~~~~~~~ip~i~~~~~~~~~~~~~~~~~~fr~~~~~~~~~~~~~~~~~~~~~-~v~ii~~~~~~g~~~~~ 159 (374)
T 3n0x_A 81 SSSAAALADLPVAEENKKILIVEPAVADQITGEKWNRYIFRTGRNSSQDAISNAVAIGKQGV-TIATLAQDYAFGRDGVA 159 (374)
T ss_dssp SSHHHHHHHHHHHHHHTCCEEECSCCCGGGGTTTCCTTEEECSCCHHHHHHHHHHHHCCTTE-EEEEEEESSHHHHHHHH
T ss_pred CCcHHHHHHHHHHHHcCccEEEcCCCchhhhcCCCCCeEEEccCCchhHHHHHHHHHhccCC-EEEEEeCCchHHHHHHH
Confidence 99999999999999999999998888888887 45899999999999999999977888888 89999999999999999
Q ss_pred HHHHHHHhcCcEEEEEEecCCCCCCChHHHHHHHHHHhcCC-----ceEEEEEcchhhHHHHHHHHHHcCCCCCceEEEE
Q 002211 201 ALGDKLAEIRCKISYKSALPPDQSVTETDVRNELVKVRMME-----ARVIVVHGYSRTGLMVFDVAQRLGMMDSGYVWIA 275 (953)
Q Consensus 201 ~l~~~l~~~g~~v~~~~~~~~~~~~~~~d~~~~l~~i~~~~-----~~vii~~~~~~~~~~~~~~a~~~g~~~~~~~wi~ 275 (953)
.|++.+++.|++|+..+.++.+ ..|++.++++|++++ ||+|++...+... .++++.+.++...++.++.
T Consensus 160 ~~~~~~~~~G~~vv~~~~~~~~----~~d~~~~l~~i~~~~~~~~~~d~v~~~~~g~~~--~~~~~~~~~~~~~g~~~~~ 233 (374)
T 3n0x_A 160 AFKEALAKTGATLATEEYVPTT----TTDFTAVGQRLFDALKDKPGKKIIWVIWAGGGD--PLTKLQDMDPKRYGIELST 233 (374)
T ss_dssp HHHHHHTTTTCEEEEEEEECTT----CCCCHHHHHHHHHHHTTCSSEEEEEECCCSSSC--HHHHHHHTCGGGGTEEEEE
T ss_pred HHHHHHHHcCCEEeeeecCCCC----CccHHHHHHHHHhcCCCCCCCCEEEEEecCCcH--HHHHHHHcchhhcCCeeee
Confidence 9999999999999999989877 778999999999988 9999997443222 2456666666555555544
Q ss_pred eCcccccccCCCCCchhhhhhccceEEEEEe---cCCChhhHHHHHHHHhhcCCCCCCCchhhHHhhHHHHHHHHHHHHH
Q 002211 276 TTWLSTFIDSKSPLSLKTAKSILGALTLRQH---TPDSKRRRDFVSRWNTLSNGSIGLNPYGLYAYDTVWMIARALKLFL 352 (953)
Q Consensus 276 ~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~---~~~~~~~~~F~~~~~~~~~~~~~~~~~~~~~YDAv~~la~Al~~~~ 352 (953)
.+..... ........|+.+...+ .++.|..++|.++|+++|+ ..|+.+++.+|||++++++|+++++
T Consensus 234 ~~~~~~~--------~~~~~~~~g~~~~~~~~~~~~~~~~~~~f~~~y~~~~g--~~p~~~a~~~Yda~~~l~~Al~~ag 303 (374)
T 3n0x_A 234 GGNILPA--------LAAYKRLPGMEGATYYYYDIPKNPINEWLVTEHQKRFN--APPDFFTAGGFSAAMAVVTAVQKAK 303 (374)
T ss_dssp CCCCTTG--------GGGGGGSTTCEEEESCCTTSCCSHHHHHHHHHHHHHHS--SCCCHHHHHHHHHHHHHHHHHHHHT
T ss_pred ccccchh--------hhhhhhhcCccccceeccCCCCCHHHHHHHHHHHHHHC--CCCChhHHHHHHHHHHHHHHHHHhC
Confidence 3321111 0111345676666543 3467889999999999998 6789999999999999999999973
Q ss_pred hcCCcccccCCCccCCCCCCcccCCCccccCchHHHHHHHHhcccCCcceeEEEccCCCCCCccEEEEEeecCC
Q 002211 353 DQGNTISFSNDTKLNGLGGGTLNLGALSIFDGGKKFLANILQTNMTGLSGPIHFNQDRSLLHPSYDIINVIEHG 426 (953)
Q Consensus 353 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~f~G~tG~v~Fd~~g~~~~~~y~I~~~~~~~ 426 (953)
+. ++++|+++|++++|+|++|+++||++++.....+.|++++.++
T Consensus 304 ~~-----------------------------~~~~v~~aL~~~~~~g~~G~i~f~~~~~~~~~~~~i~~~~~~~ 348 (374)
T 3n0x_A 304 ST-----------------------------DTEKLIAAMEGMEFDTPKGKMVFRKEDHQALQSMYHFKVKVDP 348 (374)
T ss_dssp SC-----------------------------CHHHHHHHHTTCEEEETTEEEEECTTTCBEECCEEEEEEECCT
T ss_pred CC-----------------------------CHHHHHHHHhcCCccCCCCCEEECcccCccccceEEEEEEeCC
Confidence 21 5899999999999999999999996433356788999998543
No 30
>4evq_A Putative ABC transporter subunit, substrate-bindi component; structural genomics, PSI-biology, midwest center for structu genomics; HET: MSE PHB; 1.40A {Rhodopseudomonas palustris} PDB: 4evr_A
Probab=100.00 E-value=4.4e-38 Score=354.38 Aligned_cols=346 Identities=11% Similarity=0.132 Sum_probs=299.9
Q ss_pred CCCceEEEeEEEecCC---CchhHHHHHHHHHHHHHhcCCCCCCCcEEEEEEecCCCChHHHHHHHHHHHhc-CcEEEEc
Q 002211 45 LKPEVLNVGAIFSFGT---VNGQVSRIAMKAAQDDINSDPRVLGGRKLSITMHDAKFNGFLSIMGALQFMET-DTLAIVG 120 (953)
Q Consensus 45 ~~~~~i~IG~l~~~~~---~~g~~~~~a~~lAve~iN~~g~il~g~~l~l~~~D~~~~~~~a~~~a~~li~~-~v~aiiG 120 (953)
++.++|+||+++|++. .+|.....|+++|++++| |++ +|+++++++.|+++++..+.+.+++|+++ +|.+|||
T Consensus 12 a~~~~i~IG~~~p~sg~~~~~~~~~~~g~~~a~~~~n--g~~-~g~~~~l~~~d~~~~~~~~~~~~~~l~~~~~v~~iig 88 (375)
T 4evq_A 12 AQAGALKVGLLLPYSGTYAPLGEAITRGLELYVQSQG--GKL-GGRSISFVKVDDESAPPKATELTTKLIQSEKADVLIG 88 (375)
T ss_dssp ---CCEEEEEEECSSSTTHHHHHHHHHHHHHHHHHTT--TEE-TTEEEEEEEEECTTCHHHHHHHHHCCCCCSCCSEEEE
T ss_pred hhCCCeEEEEEeCCCCcchhcCHHHHHHHHHHHHHhC--CCc-CCEEEEEEEecCCCCHHHHHHHHHHHHhcCCceEEEc
Confidence 4567999999999974 457889999999999998 555 69999999999999999999999999986 9999999
Q ss_pred cCChhhHHHHHHhhhhCCCcEEEeecCCCCCCC-CCCCcEEEccCChHHHHHHHHHHHHHcCCcEEEEEEecCccccchH
Q 002211 121 PQSAVMAHVLSHLANELQVPLLSFTALDPTLSP-LQYPFFVQTAPNDLYLMSAIAEMVSYFGWGEVIAIFNDDDQGRNGV 199 (953)
Q Consensus 121 p~~S~~a~av~~v~~~~~vP~Is~~at~~~ls~-~~~p~~fr~~p~d~~~~~ai~~~l~~~~w~~vaii~~d~~~g~~~~ 199 (953)
|.+|..+.++++++++.++|+|+++++++.+++ ..+|++||+.+++..++.++++++.++||++|++|+.++++|+...
T Consensus 89 ~~~s~~~~~~~~~~~~~~iP~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~ia~i~~~~~~~~~~~ 168 (375)
T 4evq_A 89 TVHSGVAMAMVKIAREDGIPTIVPNAGADIITRAMCAPNVFRTSFANGQIGRATGDAMIKAGLKKAVTVTWKYAAGEEMV 168 (375)
T ss_dssp CSSHHHHHHHHHHHHHHCCCEEESSCCCGGGGTTTCCTTEEESSCCHHHHHHHHHHHHHHTTCCEEEEEEESSHHHHHHH
T ss_pred CCccHHHHHHHHHHHHcCceEEecCCCChhhcccCCCCCEEEeeCChHhHHHHHHHHHHHcCCcEEEEEecCchHHHHHH
Confidence 999999999999999999999999999888887 4589999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhcCcEEEEEEecCCCCCCChHHHHHHHHHHhcCCceEEEEEcchhhHHHHHHHHHHcCCCCCceEEEEeCcc
Q 002211 200 TALGDKLAEIRCKISYKSALPPDQSVTETDVRNELVKVRMMEARVIVVHGYSRTGLMVFDVAQRLGMMDSGYVWIATTWL 279 (953)
Q Consensus 200 ~~l~~~l~~~g~~v~~~~~~~~~~~~~~~d~~~~l~~i~~~~~~vii~~~~~~~~~~~~~~a~~~g~~~~~~~wi~~~~~ 279 (953)
+.+++++++.|++++....++.+ ..|+...++++++.+||+|++.+....+..++++++++|+..+ |+.+++
T Consensus 169 ~~~~~~l~~~G~~v~~~~~~~~~----~~d~~~~~~~l~~~~~dai~~~~~~~~a~~~~~~~~~~g~~vp---~~~~~~- 240 (375)
T 4evq_A 169 SGFKKSFTAGKGEVVKDITIAFP----DVEFQSALAEIASLKPDCVYAFFSGGGALKFIKDYAAANLGIP---LWGPGF- 240 (375)
T ss_dssp HHHHHHHHHTTCEEEEEEEECTT----CCCCHHHHHHHHHHCCSEEEEECCTHHHHHHHHHHHHTTCCCC---EEEEGG-
T ss_pred HHHHHHHHHcCCeEEEEEecCCC----CccHHHHHHHHHhcCCCEEEEecCcchHHHHHHHHHHcCCCce---EEecCc-
Confidence 99999999999999888888766 5688899999999999999999999999999999999998643 555543
Q ss_pred cccccCCCCCchhhhhhccceEEEEEecC--CChhhHHHHHHHHhhcCCCCCCCchhhHHhhHHHHHHHHHHHHHhcCCc
Q 002211 280 STFIDSKSPLSLKTAKSILGALTLRQHTP--DSKRRRDFVSRWNTLSNGSIGLNPYGLYAYDTVWMIARALKLFLDQGNT 357 (953)
Q Consensus 280 ~~~~~~~~~~~~~~~~~~~g~~~~~~~~~--~~~~~~~F~~~~~~~~~~~~~~~~~~~~~YDAv~~la~Al~~~~~~~~~ 357 (953)
... .. -.......+|++...++.+ +.|..++|.++|+++|+ ..|+.+++.+|||++++++|++++...
T Consensus 241 ~~~-~~----~~~~g~~~~g~~~~~~~~~~~~~~~~~~f~~~~~~~~~--~~p~~~~~~~yda~~~~~~al~~~g~~--- 310 (375)
T 4evq_A 241 LTD-GV----EAAAGPAGDGIKTVLHYVSDLDNAENQAFVKSFEAAYK--IPPDVFAVQGWDAGQLLDAGVKAVGGD--- 310 (375)
T ss_dssp GTT-TT----HHHHGGGGTTCEEEESCCTTCCSHHHHHHHHHHHHHHS--SCCCHHHHHHHHHHHHHHHHHHHTTTC---
T ss_pred CCH-HH----HHhhhhhcCCeEEeeccCCCCCCHHHHHHHHHHHHHHC--CCCcHHHHHHHHHHHHHHHHHHHhCCC---
Confidence 211 11 1334567899998877655 46889999999999997 678899999999999999999986321
Q ss_pred ccccCCCccCCCCCCcccCCCccccCchHHHHHHHHhcccCCcceeEEEccCCCCCCccEEEEEeecCCeeeEEEEecCC
Q 002211 358 ISFSNDTKLNGLGGGTLNLGALSIFDGGKKFLANILQTNMTGLSGPIHFNQDRSLLHPSYDIINVIEHGYPQQIGYWSNY 437 (953)
Q Consensus 358 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~f~G~tG~v~Fd~~g~~~~~~y~I~~~~~~~~~~~VG~w~~~ 437 (953)
+.+++.|+++|++++|+|++|+++||++|++ ...+.|++++++++ +.|+.+-+.
T Consensus 311 ------------------------~~~~~~l~~~l~~~~~~g~~G~i~f~~~g~~-~~~~~i~~~~~g~~-~~v~~~~~~ 364 (375)
T 4evq_A 311 ------------------------VAKRKELNAAMAAASFASPRGPFKLSAAHNP-VQNFYLRELKGGKS-VNLGLAAPA 364 (375)
T ss_dssp ------------------------TTCHHHHHHHHHTCEEEETTEEEEBCTTSCB-CCCEEEEEEETTEE-EEEEEEECS
T ss_pred ------------------------CCCHHHHHHHHhcCCcccCCcceeECCCCCc-cccEEEEEEECCCc-EEeeehhhc
Confidence 1158999999999999999999999999986 56899999987666 999987553
No 31
>3lop_A Substrate binding periplasmic protein; protein structure initiative II(PSI II), NYSGXRC, structural genomics; 1.55A {Ralstonia solanacearum}
Probab=100.00 E-value=3.7e-38 Score=353.31 Aligned_cols=341 Identities=10% Similarity=0.101 Sum_probs=294.2
Q ss_pred CceEEEeEEEecCC---CchhHHHHHHHHHHHHHhcCCCCCCCcEEEEEEecCCCChHHHHHHHHHHHhc-CcEEEEccC
Q 002211 47 PEVLNVGAIFSFGT---VNGQVSRIAMKAAQDDINSDPRVLGGRKLSITMHDAKFNGFLSIMGALQFMET-DTLAIVGPQ 122 (953)
Q Consensus 47 ~~~i~IG~l~~~~~---~~g~~~~~a~~lAve~iN~~g~il~g~~l~l~~~D~~~~~~~a~~~a~~li~~-~v~aiiGp~ 122 (953)
+++|+||+++|++. .+|.....|+++|++++|++||++ |+++++++.|++++|..+.+.+++|+++ +|.+||||.
T Consensus 3 ~~~i~IG~~~p~sG~~~~~g~~~~~g~~~a~~~~N~~ggi~-G~~i~l~~~D~~~~~~~~~~~~~~l~~~~~v~~iig~~ 81 (364)
T 3lop_A 3 LADISVIQSLPLSGSQAVTGRALNAGARLYFDWLNLNGGIN-GETIRLVARDDEQKIEQTVRNVRDMARVDNPVALLTVV 81 (364)
T ss_dssp --CEEEEEEECSSSTTHHHHHHHHHHHHHHHHHHHHTTTBT-TBCEEEEEEECTTCHHHHHHHHHHHHHHSCEEEEECCC
T ss_pred CCeEEEEEEecCCCcchhccHHHHHHHHHHHHHHHhcCCcC-CeEEEEEEeCCCCCHHHHHHHHHHHHhhcCcEEEEecC
Confidence 46899999999974 457888999999999999999996 8999999999999999999999999996 999999999
Q ss_pred ChhhHHHHHH--hhhhCCCcEEEeecCCCCCCCCCCCcEEEccCChHHHHHHHHHHHHHcCCcEEEEEEecCccccchHH
Q 002211 123 SAVMAHVLSH--LANELQVPLLSFTALDPTLSPLQYPFFVQTAPNDLYLMSAIAEMVSYFGWGEVIAIFNDDDQGRNGVT 200 (953)
Q Consensus 123 ~S~~a~av~~--v~~~~~vP~Is~~at~~~ls~~~~p~~fr~~p~d~~~~~ai~~~l~~~~w~~vaii~~d~~~g~~~~~ 200 (953)
+|..+.++++ ++++.++|+|++.++++.+++ +||+||+.|++..++.++++++.++||++|++|+.+++||+...+
T Consensus 82 ~s~~~~~~~~~~~~~~~~iP~v~~~~~~~~~~~--~~~~f~~~~~~~~~~~~~~~~l~~~g~~~iaii~~~~~~g~~~~~ 159 (364)
T 3lop_A 82 GTANVEALMREGVLAEARLPLVGPATGASSMTT--DPLVFPIKASYQQEIDKMITALVTIGVTRIGVLYQEDALGKEAIT 159 (364)
T ss_dssp CHHHHHHHHHTTHHHHHTCCEESCSCCCGGGGS--CTTEECCSCCHHHHHHHHHHHHHHTTCCCEEEEEETTHHHHHHHH
T ss_pred CCHHHHhhCchhhHHhcCCcEEEcccCcHhhcc--CCcEEEeCCChHHHHHHHHHHHHHcCCceEEEEEeCchhhHHHHH
Confidence 9999999999 999999999999888887766 899999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhcCcEEEEEEecCCCCCCChHHHHHHHHHHhcCCceEEEEEcchhhHHHHHHHHHHcCCCCCceEEEEeCccc
Q 002211 201 ALGDKLAEIRCKISYKSALPPDQSVTETDVRNELVKVRMMEARVIVVHGYSRTGLMVFDVAQRLGMMDSGYVWIATTWLS 280 (953)
Q Consensus 201 ~l~~~l~~~g~~v~~~~~~~~~~~~~~~d~~~~l~~i~~~~~~vii~~~~~~~~~~~~~~a~~~g~~~~~~~wi~~~~~~ 280 (953)
.+++++++.|++++....++.+ ..|+...++++++.+||+|++.+....+..++++++++|+..+ |++.+++.
T Consensus 160 ~~~~~~~~~G~~v~~~~~~~~~----~~d~~~~~~~l~~~~~d~v~~~~~~~~a~~~~~~~~~~g~~~~---~i~~~~~~ 232 (364)
T 3lop_A 160 GVERTLKAHALAITAMASYPRN----TANVGPAVDKLLAADVQAIFLGATAEPAAQFVRQYRARGGEAQ---LLGLSSID 232 (364)
T ss_dssp HHHHHHHTTTCCCSEEEEECTT----SCCCHHHHHHHHHSCCSEEEEESCHHHHHHHHHHHHHTTCCCE---EEECTTSC
T ss_pred HHHHHHHHcCCcEEEEEEecCC----CccHHHHHHHHHhCCCCEEEEecCcHHHHHHHHHHHHcCCCCe---EEEeccCC
Confidence 9999999999999887778766 6788999999999999999999999999999999999998654 67766554
Q ss_pred ccccCCCCCchhhh-hhccceEEEEEe----cCCChhhHHHHHHHHhhcCCCCCCCchhhHHhhHHHHHHHHHHHHHhcC
Q 002211 281 TFIDSKSPLSLKTA-KSILGALTLRQH----TPDSKRRRDFVSRWNTLSNGSIGLNPYGLYAYDTVWMIARALKLFLDQG 355 (953)
Q Consensus 281 ~~~~~~~~~~~~~~-~~~~g~~~~~~~----~~~~~~~~~F~~~~~~~~~~~~~~~~~~~~~YDAv~~la~Al~~~~~~~ 355 (953)
..... .... +..+|++....+ .+..|..++|.++|+++++....|+.+++.+|||++++++|+++++..
T Consensus 233 ~~~~~-----~~~g~~~~~g~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~p~~~a~~~yda~~~~~~al~~ag~~- 306 (364)
T 3lop_A 233 PGILQ-----KVAGLDAVRGYSLALVMPNPGKSVNPVIREFNRARAAVGAKDVDLSFRAVEGFVAAKVLAEAIRRAGPK- 306 (364)
T ss_dssp HHHHH-----HHHCHHHHTTCEEEECSCCTTCTTSHHHHHHHHHHHHHTCTTCCCCHHHHHHHHHHHHHHHHHHHHCSS-
T ss_pred hHHHH-----HHhChhhcCCeEEEEEeCCCCCCCCHHHHHHHHHHHHhcCCCCCCChHHHHHHHHHHHHHHHHHHhCCC-
Confidence 32111 2234 667898876532 256788999999999998732278899999999999999999997311
Q ss_pred CcccccCCCccCCCCCCcccCCCccccCchHHHHHHHHhc-ccCC-cceeEEEccCCCCCCccEEEEEeecCCeeeE
Q 002211 356 NTISFSNDTKLNGLGGGTLNLGALSIFDGGKKFLANILQT-NMTG-LSGPIHFNQDRSLLHPSYDIINVIEHGYPQQ 430 (953)
Q Consensus 356 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~-~f~G-~tG~v~Fd~~g~~~~~~y~I~~~~~~~~~~~ 430 (953)
.+++.|+++|+++ +|+| ++|+++|+++++.......|.++++++....
T Consensus 307 ---------------------------~~~~~v~~aL~~~~~~~~~~~g~i~f~~~~~~~~~~~~i~~~~~~~~~~~ 356 (364)
T 3lop_A 307 ---------------------------PTREQVRHALTELRDYDVGGGFTVDFTDRSRPGSHYIELGVVGPNGLVIQ 356 (364)
T ss_dssp ---------------------------CCHHHHHHHHHTCEEEESSTTCEEECSSTTSCSCCCCEEEEECTTSCEEE
T ss_pred ---------------------------CCHHHHHHHHHhcCCccCCCCeeeecCCCCcCCcceEEEEEEcCCCcccc
Confidence 1489999999999 6999 9999999988776666778888877666333
No 32
>4eyg_A Twin-arginine translocation pathway signal; PSI-biology, MCSG, midwest center for structural genomics, transporter; HET: VNL; 1.86A {Rhodopseudomonas palustris} PDB: 4ey3_A* 3t0n_A* 4eyk_A*
Probab=100.00 E-value=1.3e-37 Score=349.64 Aligned_cols=347 Identities=16% Similarity=0.161 Sum_probs=296.2
Q ss_pred CCceEEEeEEEecCCC---chhHHHHHHHHHHHHHhcCCCCCCCcEEEEEEecCCCChHHHHHHHHHHHh-cCcEEEEcc
Q 002211 46 KPEVLNVGAIFSFGTV---NGQVSRIAMKAAQDDINSDPRVLGGRKLSITMHDAKFNGFLSIMGALQFME-TDTLAIVGP 121 (953)
Q Consensus 46 ~~~~i~IG~l~~~~~~---~g~~~~~a~~lAve~iN~~g~il~g~~l~l~~~D~~~~~~~a~~~a~~li~-~~v~aiiGp 121 (953)
++++|+||+++|++.. +|.....|+++|++++|. ++ +|++|++++.|+++++..+.+.+++|++ ++|.+||||
T Consensus 3 a~~~i~IG~~~p~sg~~~~~g~~~~~g~~~a~~~~~~--~i-~G~~i~l~~~D~~~~~~~~~~~~~~li~~~~v~~iiG~ 79 (368)
T 4eyg_A 3 AEDTFKVGLIVPMTGGQASTGKQIDNAIKLYIKKHGD--TV-AGKKIEVILKDDAAIPDNTKRLAQELIVNDKVNVIAGF 79 (368)
T ss_dssp -CCEEEEEEEECSSSTTHHHHHHHHHHHHHHHHHHCS--EE-TTEEEEEEEEECTTCHHHHHHHHHHHHHTSCCSEEEEC
T ss_pred CCCcEEEEEEeCCcCcchhccHHHHHHHHHHHHHcCC--CC-CCeEEEEEEeCCCCCHHHHHHHHHHHHhcCCcEEEECC
Confidence 4578999999999844 478899999999999973 35 5899999999999999999999999998 699999999
Q ss_pred CChhhHHHHHHhhhhCCCcEEEeecCCCCCCCCCCCcEEEccCChHHHHHHHHHHHHHcCCcEEEEEEecCccccchHHH
Q 002211 122 QSAVMAHVLSHLANELQVPLLSFTALDPTLSPLQYPFFVQTAPNDLYLMSAIAEMVSYFGWGEVIAIFNDDDQGRNGVTA 201 (953)
Q Consensus 122 ~~S~~a~av~~v~~~~~vP~Is~~at~~~ls~~~~p~~fr~~p~d~~~~~ai~~~l~~~~w~~vaii~~d~~~g~~~~~~ 201 (953)
.+|..+.++++++++.++|+|+++++++.+++. +||+||+.+++..++.++++++.++||++|++|+.|+++|+...+.
T Consensus 80 ~~s~~~~~~~~~~~~~~ip~i~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~l~~~g~~~ia~i~~~~~~g~~~~~~ 158 (368)
T 4eyg_A 80 GITPAALAAAPLATQAKVPEIVMAAGTSIITER-SPYIVRTSFTLAQSSIIIGDWAAKNGIKKVATLTSDYAPGNDALAF 158 (368)
T ss_dssp SSHHHHHHHHHHHHHHTCCEEESSCCCGGGGGG-CTTEEESSCCHHHHHHHHHHHHHHTTCCEEEEEEESSHHHHHHHHH
T ss_pred CccHHHHHHHHHHHhCCceEEeccCCChhhccC-CCCEEEecCChHHHHHHHHHHHHHcCCCEEEEEecCchHhHHHHHH
Confidence 999999999999999999999998888877765 8999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhcCcEEEEEEecCCCCCCChHHHHHHHHHHhcCCceEEEEEcchhhHHHHHHHHHHcCCCCCceEEEEeCcccc
Q 002211 202 LGDKLAEIRCKISYKSALPPDQSVTETDVRNELVKVRMMEARVIVVHGYSRTGLMVFDVAQRLGMMDSGYVWIATTWLST 281 (953)
Q Consensus 202 l~~~l~~~g~~v~~~~~~~~~~~~~~~d~~~~l~~i~~~~~~vii~~~~~~~~~~~~~~a~~~g~~~~~~~wi~~~~~~~ 281 (953)
+++.+++.|++++....++.+ ..|+...++++++.++|+|++.+....+..+++++++.|+..+++.|++++++..
T Consensus 159 ~~~~l~~~g~~v~~~~~~~~~----~~d~~~~~~~l~~~~~d~v~~~~~~~~a~~~~~~~~~~g~~~~~v~~~~~~~~~~ 234 (368)
T 4eyg_A 159 FKERFTAGGGEIVEEIKVPLA----NPDFAPFLQRMKDAKPDAMFVFVPAGQGGNFMKQFAERGLDKSGIKVIGPGDVMD 234 (368)
T ss_dssp HHHHHHHTTCEEEEEEEECSS----SCCCHHHHHHHHHHCCSEEEEECCTTCHHHHHHHHHHTTGGGTTCEEEEETTTTC
T ss_pred HHHHHHHcCCEEEEEEeCCCC----CCcHHHHHHHHHhcCCCEEEEeccchHHHHHHHHHHHcCCCcCCceEEecCcccC
Confidence 999999999999988888876 6788999999999999999998888899999999999999766577888875432
Q ss_pred cccCCCCCchhhhhhccceEEEEEecC--CChhhHHHHHHHHhhc-CCCCCCCchhhHHhhHHHHHHHHHHHHHhcCCcc
Q 002211 282 FIDSKSPLSLKTAKSILGALTLRQHTP--DSKRRRDFVSRWNTLS-NGSIGLNPYGLYAYDTVWMIARALKLFLDQGNTI 358 (953)
Q Consensus 282 ~~~~~~~~~~~~~~~~~g~~~~~~~~~--~~~~~~~F~~~~~~~~-~~~~~~~~~~~~~YDAv~~la~Al~~~~~~~~~~ 358 (953)
.... .......+|++...++.+ ..|..++|.++| ++| + ..|+.+++.+|||++++++|++++...
T Consensus 235 ~~~~-----~~~g~~~~g~~~~~~~~~~~~~~~~~~f~~~~-~~~~~--~~p~~~~~~~yda~~~~~~al~~~g~~---- 302 (368)
T 4eyg_A 235 DDLL-----NSMGDAALGVVTAHMYSAAHPSAMNKEFVAAY-KKEFG--QRPGFMAVGGYDGIHLVFEALKKTGGK---- 302 (368)
T ss_dssp HHHH-----TTCCGGGTTCEEEESCCTTCCSHHHHHHHHHH-HHHHS--SCCCHHHHHHHHHHHHHHHHHHHTTTC----
T ss_pred HHHH-----HhhhhhhCCeEEeeecCCCCCCHHHHHHHHHH-HHhCC--CCCChHHHHHHHHHHHHHHHHHHhCCC----
Confidence 2111 112356789888877654 468899999999 888 5 578899999999999999999996311
Q ss_pred cccCCCccCCCCCCcccCCCccccCchHHHHHHHHhcccCCcceeEEEc-cCCCCCCccEEEEEee-cCCeee--EEEEe
Q 002211 359 SFSNDTKLNGLGGGTLNLGALSIFDGGKKFLANILQTNMTGLSGPIHFN-QDRSLLHPSYDIINVI-EHGYPQ--QIGYW 434 (953)
Q Consensus 359 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~f~G~tG~v~Fd-~~g~~~~~~y~I~~~~-~~~~~~--~VG~w 434 (953)
. +++.|+++|++++|+|++|+++|| ++|+ ....+.|.+++ .+|.|+ .+|.|
T Consensus 303 -----------------------~-~~~~l~~al~~~~~~g~~G~i~f~~~~~~-~~~~~~i~~~~~~~G~~~~v~~~~~ 357 (368)
T 4eyg_A 303 -----------------------A-DGDSLIAAMKGMKWESPRGPISIDPETRD-IVQNIYIRKVEKVDGELYNIEFAKF 357 (368)
T ss_dssp -----------------------C-SHHHHHHHHTTCEEEETTEEEEECTTTCC-EEEEEEEEEEEEETTEEEEEEEEEE
T ss_pred -----------------------C-CHHHHHHHHHcCCcccCCCCeEECcccCC-cccceEEEEEEecCCeEEEEEeecc
Confidence 1 489999999999999999999999 6776 46778899987 244434 45555
Q ss_pred cCC
Q 002211 435 SNY 437 (953)
Q Consensus 435 ~~~ 437 (953)
.+.
T Consensus 358 ~~~ 360 (368)
T 4eyg_A 358 DAV 360 (368)
T ss_dssp EEE
T ss_pred ccc
Confidence 443
No 33
>3sg0_A Extracellular ligand-binding receptor; structural genomics, PSI-biology; HET: 173; 1.20A {Rhodopseudomonas palustris} PDB: 4dqd_A*
Probab=100.00 E-value=1.4e-36 Score=343.58 Aligned_cols=344 Identities=15% Similarity=0.192 Sum_probs=287.0
Q ss_pred CCCceEEEeEEEecCCC---chhHHHHHHHHHHHHHhcCCCCCCCcEEEEEEecCCCChHHHHHHHHHHHhc-CcEEEEc
Q 002211 45 LKPEVLNVGAIFSFGTV---NGQVSRIAMKAAQDDINSDPRVLGGRKLSITMHDAKFNGFLSIMGALQFMET-DTLAIVG 120 (953)
Q Consensus 45 ~~~~~i~IG~l~~~~~~---~g~~~~~a~~lAve~iN~~g~il~g~~l~l~~~D~~~~~~~a~~~a~~li~~-~v~aiiG 120 (953)
..+++|+||+++|++.. .|.....|+++|++++| |+++++++.|+++++..+.+.+++|+++ +|.+|||
T Consensus 23 ~a~~~i~IG~~~p~sg~~~~~g~~~~~g~~~a~~~i~-------G~~i~l~~~d~~~~~~~~~~~~~~l~~~~~v~~iig 95 (386)
T 3sg0_A 23 AAQAEIKIGITMSASGPGAALGQPQSKTVAALPKEIG-------GEKVTYFALDDESDPTKAAQNARKLLSEEKVDVLIG 95 (386)
T ss_dssp --CCCEEEEEEECCSSTTHHHHHHHHHHGGGSCSEET-------TEEEEEEEEECTTCHHHHHHHHHHHHHTSCCSEEEC
T ss_pred cCCCceEEEEEeccCCchhhhcHHHHHHHHHHHHHcC-------CEEEEEEEecCCCCHHHHHHHHHHHHhhcCceEEEC
Confidence 45678999999999854 57788999999999984 7899999999999999999999999998 8999999
Q ss_pred cCChhhHHHHHHhhhhCCCcEEEeecCCCCCC--CCCCCcEEEccCChHHHHHHHHHHHHHcCCcEEEEEEecCccccch
Q 002211 121 PQSAVMAHVLSHLANELQVPLLSFTALDPTLS--PLQYPFFVQTAPNDLYLMSAIAEMVSYFGWGEVIAIFNDDDQGRNG 198 (953)
Q Consensus 121 p~~S~~a~av~~v~~~~~vP~Is~~at~~~ls--~~~~p~~fr~~p~d~~~~~ai~~~l~~~~w~~vaii~~d~~~g~~~ 198 (953)
|.+|..+.++.+++++.++|+|+++++++.++ ...+||+||+.+++..++.++++++.++||++|++|+.|++||+..
T Consensus 96 ~~~s~~~~~~~~~~~~~~ip~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~ia~i~~~~~~~~~~ 175 (386)
T 3sg0_A 96 SSLTPVSLPLIDIAAEAKTPLMTMAAAAILVAPMDERRKWVYKVVPNDDIMAEAIGKYIAKTGAKKVGYIGFSDAYGEGY 175 (386)
T ss_dssp CSSHHHHHHHHHHHHHTTCCEEECCCCGGGTCSCCTTGGGEEECSCCHHHHHHHHHHHHHHTTCCEEEEEEESSHHHHHH
T ss_pred CCCchhHHHHHHHHHhcCCeEEEecCCCccccccCCCCCcEEecCCCcHHHHHHHHHHHHhcCCCEEEEEecCchHHHHH
Confidence 99999999999999999999999998888777 3568999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhcCcEEEEEEecCCCCCCChHHHHHHHHHHhcCCceEEEEEcchhhHHHHHHHHHHcCCCCCceEEEEeCc
Q 002211 199 VTALGDKLAEIRCKISYKSALPPDQSVTETDVRNELVKVRMMEARVIVVHGYSRTGLMVFDVAQRLGMMDSGYVWIATTW 278 (953)
Q Consensus 199 ~~~l~~~l~~~g~~v~~~~~~~~~~~~~~~d~~~~l~~i~~~~~~vii~~~~~~~~~~~~~~a~~~g~~~~~~~wi~~~~ 278 (953)
.+.+++.+++.|++++....++.+ ..|+...++++++.+||+|++.+...++..+++++++.|+..+ ++..++
T Consensus 176 ~~~~~~~l~~~g~~v~~~~~~~~~----~~d~~~~~~~~~~~~~dav~~~~~~~~a~~~~~~~~~~g~~~~---~~~~~~ 248 (386)
T 3sg0_A 176 YKVLAAAAPKLGFELTTHEVYARS----DASVTGQVLKIIATKPDAVFIASAGTPAVLPQKALRERGFKGA---IYQTHG 248 (386)
T ss_dssp HHHHHHHHHHHTCEECCCEEECTT----CSCCHHHHHHHHHTCCSEEEEECCSGGGHHHHHHHHHTTCCSE---EECCGG
T ss_pred HHHHHHHHHHcCCEEEEEEeeCCC----CCcHHHHHHHHHhcCCCEEEEecCcchHHHHHHHHHHcCCCCc---EEeccc
Confidence 999999999999999877777766 6688999999999999999999998999999999999998743 566655
Q ss_pred ccccccCCCCCchhhhhhccceEEEEEe------cC-CC---hhhHHHHHHHHhhcCCCCCCCchhhHHhhHHHHHHHHH
Q 002211 279 LSTFIDSKSPLSLKTAKSILGALTLRQH------TP-DS---KRRRDFVSRWNTLSNGSIGLNPYGLYAYDTVWMIARAL 348 (953)
Q Consensus 279 ~~~~~~~~~~~~~~~~~~~~g~~~~~~~------~~-~~---~~~~~F~~~~~~~~~~~~~~~~~~~~~YDAv~~la~Al 348 (953)
+...... ....+..+|++....+ .+ .. +..++|.++|+++|+. ..|+.+++.+|||++++++|+
T Consensus 249 ~~~~~~~-----~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~-~~p~~~~~~~yda~~~~~~al 322 (386)
T 3sg0_A 249 VATEEFI-----KLGGKDVEGAIFAGEAFSGAEDMPADSPFRKVKARFVDAYKAANGG-AAPTIFGVHLWDSMTLVENAI 322 (386)
T ss_dssp GCSHHHH-----HHHGGGGTTCEEEECHHHHGGGSCTTCHHHHHHHHHHHHHHHHTTT-CCCCHHHHHHHHHHHHHHHHH
T ss_pred cCCHHHH-----HhhhhhcCCeEEecccccccccCCCCCcchHHHHHHHHHHHHHhCC-CCCChhHHHHHHHHHHHHHHH
Confidence 4432111 2344678898876542 12 22 4579999999999872 257899999999999999999
Q ss_pred HHHHhcCCcccccCCCccCCCCCCcccCCCccccCchHHHHHHHHhc-ccCCcceeEEEccCCCC--CCccEEEEEeecC
Q 002211 349 KLFLDQGNTISFSNDTKLNGLGGGTLNLGALSIFDGGKKFLANILQT-NMTGLSGPIHFNQDRSL--LHPSYDIINVIEH 425 (953)
Q Consensus 349 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~-~f~G~tG~v~Fd~~g~~--~~~~y~I~~~~~~ 425 (953)
+++.+.... +...+++.|.++|+++ +|+|++|+++|+++++. ....+.|++++++
T Consensus 323 ~~a~~~~~~----------------------g~~~~~~~~~~al~~~~~~~g~~G~~~f~~~~~~g~~~~~~~i~~~~~G 380 (386)
T 3sg0_A 323 PAALKAAKP----------------------GTPEFRAAIRDQIEKSKDLALNNGLSNMTPDNHNGYDERSAFLIEIRDG 380 (386)
T ss_dssp HHHHHHCCT----------------------TSHHHHHHHHHHHTTCCSEEETTEEECCCSSCSSCCCGGGCEEEEEETT
T ss_pred HHhhhccCC----------------------CCcchHHHHHHHHHhccCccccceeEEECCCcCCCCCCCceEEEEEECC
Confidence 998654210 0112478999999999 79999999999876543 3456889999765
Q ss_pred CeeeEE
Q 002211 426 GYPQQI 431 (953)
Q Consensus 426 ~~~~~V 431 (953)
.+ +.+
T Consensus 381 ~~-~~~ 385 (386)
T 3sg0_A 381 AF-RLK 385 (386)
T ss_dssp EE-EEC
T ss_pred EE-Eec
Confidence 54 543
No 34
>1pea_A Amidase operon; gene regulator, receptor, binding protein; 2.10A {Pseudomonas aeruginosa} SCOP: c.93.1.1 PDB: 1qo0_A 1qnl_A
Probab=100.00 E-value=7.2e-35 Score=329.09 Aligned_cols=348 Identities=14% Similarity=0.060 Sum_probs=285.2
Q ss_pred CCceEEEeEEEecCCC---chhHHHHHHHHHHHHHhcCCCCCCCcEEEEEEecCCCChHHHHHHHHHHHh-cCcEEEEcc
Q 002211 46 KPEVLNVGAIFSFGTV---NGQVSRIAMKAAQDDINSDPRVLGGRKLSITMHDAKFNGFLSIMGALQFME-TDTLAIVGP 121 (953)
Q Consensus 46 ~~~~i~IG~l~~~~~~---~g~~~~~a~~lAve~iN~~g~il~g~~l~l~~~D~~~~~~~a~~~a~~li~-~~v~aiiGp 121 (953)
.+++++||+++|++.. +|.....|+++|++++|++||++ |+++++++.|+++++..+.+.+++|++ ++|.+||||
T Consensus 4 ~~~~~~IG~~~p~sg~~~~~~~~~~~g~~~a~~~~N~~ggi~-G~~l~l~~~d~~~~~~~~~~~~~~l~~~~~v~~iig~ 82 (385)
T 1pea_A 4 HQERPLIGLLFSETGVTADIERSQRYGALLAVEQLNREGGVG-GRPIETLSQDPGGDPDRYRLCAEDFIRNRGVRFLVGC 82 (385)
T ss_dssp ----CEEEEECCSSSTTHHHHHHHHHHHHHHHHHHHTTTTBT-TBCCEEEEECCTTCHHHHHHHHHHHHHTTCCCEEEEC
T ss_pred CCCCeEEEEEECCCCcchhcCHHHHHHHHHHHHHhccccCCC-CeEEEEEEeCCCCCHHHHHHHHHHHHhhCCcEEEECC
Confidence 3568999999999743 67888999999999999999997 899999999999999999999999997 699999999
Q ss_pred CChhhHHHHHHhhhhCCCcEEEeecCCCCCCCCCCCcEEEccCChHHHHHHHHHHHHHcCCcEEEEEEecCccccchHHH
Q 002211 122 QSAVMAHVLSHLANELQVPLLSFTALDPTLSPLQYPFFVQTAPNDLYLMSAIAEMVSYFGWGEVIAIFNDDDQGRNGVTA 201 (953)
Q Consensus 122 ~~S~~a~av~~v~~~~~vP~Is~~at~~~ls~~~~p~~fr~~p~d~~~~~ai~~~l~~~~w~~vaii~~d~~~g~~~~~~ 201 (953)
.+|..+.++.+++.+.++|+|++++++. ...+|++||+.+++..++..+++++.+.||++|++|+.++.||+...+.
T Consensus 83 ~~s~~~~~~~~~~~~~~iP~v~~~~~~~---~~~~~~~~~v~~~~~~~~~~~~~~l~~~g~~~ia~i~~~~~~~~~~~~~ 159 (385)
T 1pea_A 83 YMSHTRKAVMPVVERADALLCYPTPYEG---FEYSPNIVYGGPAPNQNSAPLAAYLIRHYGERVVFIGSDYIYPRESNHV 159 (385)
T ss_dssp CSHHHHHHHHHHHHHTTCEEEECSCCCC---CCCCTTEEECSCCGGGTHHHHHHHHHTTTCSEEEEEEESSHHHHHHHHH
T ss_pred CchHHHHHHHHHHHhcCceEEECCcccC---ccCCCCEEEecCChHHhHHHHHHHHHHccCcEEEEEeCCChHHHHHHHH
Confidence 9998888999999999999999865421 1246899999999999999999999999999999999998899999999
Q ss_pred HHHHHHhcCcEEEEEEecCCCCCCChHHHHHHHHHHhcCCceEEEEEcchhhHHHHHHHHHHcCCCCCceEEEEeCcccc
Q 002211 202 LGDKLAEIRCKISYKSALPPDQSVTETDVRNELVKVRMMEARVIVVHGYSRTGLMVFDVAQRLGMMDSGYVWIATTWLST 281 (953)
Q Consensus 202 l~~~l~~~g~~v~~~~~~~~~~~~~~~d~~~~l~~i~~~~~~vii~~~~~~~~~~~~~~a~~~g~~~~~~~wi~~~~~~~ 281 (953)
+++++++.|++++....++.. ....++...++++++.+||+|++.+....+..++++++++|+..+.+.++..++...
T Consensus 160 ~~~~l~~~G~~v~~~~~~~~~--~~~~d~~~~~~~l~~~~pdaI~~~~~~~~a~~~~~~~~~~G~~~~~~~~~~~~~~~~ 237 (385)
T 1pea_A 160 MRHLYRQHGGTVLEEIYIPLY--PSDDDLQRAVERIYQARADVVFSTVVGTGTAELYRAIARRYGDGRRPPIASLTTSEA 237 (385)
T ss_dssp HHHHHHHTTCEEEEEEEECSS--CCHHHHHHHHHHHHHHTCSEEEEECCTHHHHHHHHHHHHHHCSSCCCCEEESSCCHH
T ss_pred HHHHHHHcCCEEEEEEeecCC--CCcchHHHHHHHHHHCCCCEEEEecccccHHHHHHHHHHcCCCcCCceEEecccchH
Confidence 999999999999876666542 237899999999998899999998888889999999999998754444555443221
Q ss_pred cccCCCCCchhhhhhccceEEEEEec--CCChhhHHHHHHHHhhcCCCCCCCchhhHHhhHHHHHHHHHHHHHhcCCccc
Q 002211 282 FIDSKSPLSLKTAKSILGALTLRQHT--PDSKRRRDFVSRWNTLSNGSIGLNPYGLYAYDTVWMIARALKLFLDQGNTIS 359 (953)
Q Consensus 282 ~~~~~~~~~~~~~~~~~g~~~~~~~~--~~~~~~~~F~~~~~~~~~~~~~~~~~~~~~YDAv~~la~Al~~~~~~~~~~~ 359 (953)
.+.. ...+..+|++...++. .+.+..++|.++|+++|+....++.+++.+|||++++++|+++++..
T Consensus 238 ~~~~------~~~~~~~g~~~~~~~~~~~~~~~~~~f~~~~~~~~g~~~~~~~~~~~~yda~~~~~~Al~~ag~~----- 306 (385)
T 1pea_A 238 EVAK------MESDVAEGQVVVAPYFSSIDTPASRAFVQACHGFFPENATITAWAEAAYWQTLLLGRAAQAAGNW----- 306 (385)
T ss_dssp HHTT------SCHHHHTTCEEEESCCTTCSSHHHHHHHHHHHTTSCTTCCCCHHHHHHHHHHHHHHHHHHHHTSC-----
T ss_pred HHHh------cCchhhCCeEEecccccccCCHHHHHHHHHHHHHhCCCCCCChHHHHHHHHHHHHHHHHHHhCCC-----
Confidence 1111 1124678988887664 35788999999999998743457889999999999999999997321
Q ss_pred ccCCCccCCCCCCcccCCCccccCchHHHHHHHHhcccCCcceeEEEccCCCCCCccEEEEEeecCCeeeEEEEe
Q 002211 360 FSNDTKLNGLGGGTLNLGALSIFDGGKKFLANILQTNMTGLSGPIHFNQDRSLLHPSYDIINVIEHGYPQQIGYW 434 (953)
Q Consensus 360 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~f~G~tG~v~Fd~~g~~~~~~y~I~~~~~~~~~~~VG~w 434 (953)
+++.|+++|++++|+|++|+++||++++.....+.|.++..+|.++.|...
T Consensus 307 ------------------------~~~~l~~al~~~~~~g~~G~i~f~~~~~~~~~~~~i~~~~~~g~~~~v~~~ 357 (385)
T 1pea_A 307 ------------------------RVEDVQRHLYDIDIDAPQGPVRVERQNNHSRLSSRIAEIDARGVFQVRWQS 357 (385)
T ss_dssp ------------------------CHHHHHHHHTTCCEEETTEEEEECTTTSCEEBCCEEEEECTTSCEEEEEEC
T ss_pred ------------------------CHHHHHHHHhhCcccCCCCCeEEcCCCCccccceEEEEEcCCCcEEEeecC
Confidence 489999999999999999999999855445667888888434443766654
No 35
>3snr_A Extracellular ligand-binding receptor; structural genomics, APC102214, PSI-biology, midwest center structural genomics, MCSG; HET: MSE TYR PHE; 1.49A {Rhodopseudomonas palustris} PDB: 3uk0_A* 3t23_A* 3ukj_A* 4eyo_A* 4eyq_A* 3tx6_A* 4f8j_A* 4fb4_A*
Probab=100.00 E-value=5.4e-35 Score=327.36 Aligned_cols=340 Identities=16% Similarity=0.145 Sum_probs=284.5
Q ss_pred CCceEEEeEEEecCCC---chhHHHHHHHHHHHHHhcCCCCCCCcEEEEEEecCCCChHHHHHHHHHHHhc-CcEEEEcc
Q 002211 46 KPEVLNVGAIFSFGTV---NGQVSRIAMKAAQDDINSDPRVLGGRKLSITMHDAKFNGFLSIMGALQFMET-DTLAIVGP 121 (953)
Q Consensus 46 ~~~~i~IG~l~~~~~~---~g~~~~~a~~lAve~iN~~g~il~g~~l~l~~~D~~~~~~~a~~~a~~li~~-~v~aiiGp 121 (953)
.+++|+||+++|++.. +|.....|+++|++++| |+++++++.|+++++..+.+.+++|+++ +|.+||||
T Consensus 4 a~~~i~IG~~~p~sg~~~~~g~~~~~g~~~a~~~i~-------g~~i~l~~~d~~~~~~~~~~~~~~l~~~~~v~~iig~ 76 (362)
T 3snr_A 4 ETNEITVGISVTTTGPAAALGIPERNALEFVVKEIS-------GHPIKIIVLDDGGDPTAATTNARRFVTESKADVIMGS 76 (362)
T ss_dssp CCCCEEEEEEECCSSTTHHHHHHHHHGGGGSCSEET-------TEEEEEEEEECTTCHHHHHHHHHHHHHTSCCSEEEEC
T ss_pred CCCCeEEEEEecccCchhhcCHHHHHHHHHHHHHhC-------CeEEEEEEecCCCCHHHHHHHHHHHHhccCceEEEcC
Confidence 4678999999999854 57788999999999984 7899999999999999999999999998 89999999
Q ss_pred CChhhHHHHHHhhhhCCCcEEEeecCCCCCCCCCCCcEEEccCChHHHHHHHHHHHHHcCCcEEEEEEecCccccchHHH
Q 002211 122 QSAVMAHVLSHLANELQVPLLSFTALDPTLSPLQYPFFVQTAPNDLYLMSAIAEMVSYFGWGEVIAIFNDDDQGRNGVTA 201 (953)
Q Consensus 122 ~~S~~a~av~~v~~~~~vP~Is~~at~~~ls~~~~p~~fr~~p~d~~~~~ai~~~l~~~~w~~vaii~~d~~~g~~~~~~ 201 (953)
.+|..+.++.+++.+.++|+|++.++ + +....+|++||+.+++..++.++++++.++||++|++|+.+++||+...+.
T Consensus 77 ~~s~~~~~~~~~~~~~~ip~v~~~~~-~-~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~ia~i~~~~~~~~~~~~~ 154 (362)
T 3snr_A 77 SVTPPSVAISNVANEAQIPHIALAPL-P-ITPERAKWSVVMPQPIPIMGKVLYEHMKKNNVKTVGYIGYSDSYGDLWFND 154 (362)
T ss_dssp SSHHHHHHHHHHHHHHTCCEEESSCC-C-CCTTTTTTEEECSCCHHHHHHHHHHHHHHTTCCEEEEEEESSHHHHHHHHH
T ss_pred CCcHHHHHHHHHHHHcCccEEEecCC-c-cccCCCCcEEecCCChHHHHHHHHHHHHhcCCCEEEEEecCchHHHHHHHH
Confidence 99999999999999999999998877 4 334568999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhcCcEEEEEEecCCCCCCChHHHHHHHHHHhcCCceEEEEEcchhhHHHHHHHHHHcCCCCCceEEEEeCcccc
Q 002211 202 LGDKLAEIRCKISYKSALPPDQSVTETDVRNELVKVRMMEARVIVVHGYSRTGLMVFDVAQRLGMMDSGYVWIATTWLST 281 (953)
Q Consensus 202 l~~~l~~~g~~v~~~~~~~~~~~~~~~d~~~~l~~i~~~~~~vii~~~~~~~~~~~~~~a~~~g~~~~~~~wi~~~~~~~ 281 (953)
+++++++.|++++....++.+ ..|+...++++++.+||+|++.+....+..++++++++|+..+ ++...++.+
T Consensus 155 ~~~~l~~~g~~v~~~~~~~~~----~~~~~~~~~~l~~~~~dav~~~~~~~~a~~~~~~~~~~g~~~p---~i~~~g~~~ 227 (362)
T 3snr_A 155 LKKQGEAMGLKIVGEERFARP----DTSVAGQALKLVAANPDAILVGASGTAAALPQTTLRERGYNGL---IYQTHGAAS 227 (362)
T ss_dssp HHHHHHHTTCEEEEEEEECTT----CSCCHHHHHHHHHHCCSEEEEECCHHHHHHHHHHHHHTTCCSE---EEECGGGCS
T ss_pred HHHHHHHcCCEEEEEeecCCC----CCCHHHHHHHHHhcCCCEEEEecCcchHHHHHHHHHHcCCCcc---EEeccCcCc
Confidence 999999999999888888766 6678889999999999999999989999999999999998754 466655443
Q ss_pred cccCCCCCchhhhhhccceEEEEEe----------cCCChhhHHHHHHHHhhcCCCCCCCchhhHHhhHHHHHHHHHHHH
Q 002211 282 FIDSKSPLSLKTAKSILGALTLRQH----------TPDSKRRRDFVSRWNTLSNGSIGLNPYGLYAYDTVWMIARALKLF 351 (953)
Q Consensus 282 ~~~~~~~~~~~~~~~~~g~~~~~~~----------~~~~~~~~~F~~~~~~~~~~~~~~~~~~~~~YDAv~~la~Al~~~ 351 (953)
.... .......+|++....+ .|..+..++|.++|+++|+. ..|+.+++.+|||++++++|++++
T Consensus 228 ~~~~-----~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~-~~p~~~~~~~yda~~~~~~al~~a 301 (362)
T 3snr_A 228 MDFI-----RIAGKSAEGVLMASGPVMDPEGQDDTALTKKPGMALVKVYEEKYGP-SSRSQFAGHSYDAFKVLERVVPVA 301 (362)
T ss_dssp HHHH-----HHHGGGGTTCEEEECGGGCSTTSCTTCTTHHHHHHHHHHHHHHHCT-TCCCHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHH-----HHhHHHhCCCEEecccccccccCCCcCcccHHHHHHHHHHHHHhCC-CCCCchhHhHHHHHHHHHHHHHHh
Confidence 2111 2344678898877642 12235689999999999872 267899999999999999999998
Q ss_pred HhcCCcccccCCCccCCCCCCcccCCCccccCchHHHHHHHHhc-ccCCcceeEEEccCCCC--CCccEEEEEeecCCee
Q 002211 352 LDQGNTISFSNDTKLNGLGGGTLNLGALSIFDGGKKFLANILQT-NMTGLSGPIHFNQDRSL--LHPSYDIINVIEHGYP 428 (953)
Q Consensus 352 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~-~f~G~tG~v~Fd~~g~~--~~~~y~I~~~~~~~~~ 428 (953)
.+.... +...+++.|+++|+++ +|+|++|+++|+++++. ....+.|++++++.+
T Consensus 302 ~~~~~~----------------------g~~~~~~~~~~al~~~~~~~g~~G~~~f~~~~~~g~~~~~~~i~~~~~G~~- 358 (362)
T 3snr_A 302 LKKAKP----------------------GTQEFREALREAFLTEKDIAASQGVYNFTETDRYGLDDRSRILLTVKNGKY- 358 (362)
T ss_dssp HHHCCT----------------------TSHHHHHHHHHHHHHCCCEECSSCEECCCSSCSSCCCGGGCEEEEEETTEE-
T ss_pred hccccC----------------------CCcchHHHHHHHHHhcCCcccceeeEEeCCCCCCCCCCCCeEEEEEECCEE-
Confidence 654210 0112489999999999 89999999999987432 346688999976554
Q ss_pred eE
Q 002211 429 QQ 430 (953)
Q Consensus 429 ~~ 430 (953)
+.
T Consensus 359 ~~ 360 (362)
T 3snr_A 359 VI 360 (362)
T ss_dssp EE
T ss_pred EE
Confidence 54
No 36
>2h4a_A YRAM (HI1655); perplasmic binding protein, lipoprotein; 1.35A {Haemophilus influenzae} PDB: 3ckm_A
Probab=99.97 E-value=8.2e-30 Score=276.94 Aligned_cols=307 Identities=10% Similarity=0.051 Sum_probs=244.3
Q ss_pred EEeEEEecCC---CchhHHHHHHHHHHHHHhcCCCCCCCcEEEEEEecCCCChHHHHHHHHHHHhcCcEEEEccCChhhH
Q 002211 51 NVGAIFSFGT---VNGQVSRIAMKAAQDDINSDPRVLGGRKLSITMHDAKFNGFLSIMGALQFMETDTLAIVGPQSAVMA 127 (953)
Q Consensus 51 ~IG~l~~~~~---~~g~~~~~a~~lAve~iN~~g~il~g~~l~l~~~D~~~~~~~a~~~a~~li~~~v~aiiGp~~S~~a 127 (953)
|||+++|+|. .+|...++|+++|. .|++++++++||+++| +..+++++++++|.+||||.+|+.+
T Consensus 2 kIG~llplSG~~a~~G~~~~~G~~lA~----------~G~~i~l~~~D~~~~~--a~~~~~~l~~~~v~~IiGp~~s~~~ 69 (325)
T 2h4a_A 2 QIGLLLPLSGDGQILGTTIQSGFNDAK----------GNSTIPVQVFDTSMNS--VQDIIAQAKQAGIKTLVGPLLKQNL 69 (325)
T ss_dssp CEEEEECCSSTTHHHHHHHHHHHHHHH----------TTCCSCEEEEETTTSC--HHHHHHHHHHTTCCEEECCCSHHHH
T ss_pred cEEEEECCCCccHHHHHHHHHHHHHhc----------cCCCceEEEEECCCCh--HHHHHHHHHHCCCCEEEeeCCHHHH
Confidence 6999999984 46899999999996 2789999999999998 5777888998899999999999999
Q ss_pred HHHHHhh-hhCCCcEEEeecCCCCCCCCCCCcEEEccCChHHHHHHHHHHHHHcCCcEEEEEEecCccccchHHHHHHHH
Q 002211 128 HVLSHLA-NELQVPLLSFTALDPTLSPLQYPFFVQTAPNDLYLMSAIAEMVSYFGWGEVIAIFNDDDQGRNGVTALGDKL 206 (953)
Q Consensus 128 ~av~~v~-~~~~vP~Is~~at~~~ls~~~~p~~fr~~p~d~~~~~ai~~~l~~~~w~~vaii~~d~~~g~~~~~~l~~~l 206 (953)
.++++++ .+.+||+|++++++. .....+.|+||+. +..++.++++++.+.|.|++++|+.+++||++..+.|++++
T Consensus 70 ~a~~~~~~~~~~vp~i~~~~~~~-~~~~~~~~~f~~~--~~~~~~~~a~~a~~~g~k~vail~~~~~yG~~~~~~F~~~~ 146 (325)
T 2h4a_A 70 DVILADPAQIQGMDVLALNATPN-SRAIPQLCYYGLS--PEDEAESAANKMWNDGVRNPLVAMPQNDLGQRVGNAFNVRW 146 (325)
T ss_dssp HHHHHCGGGGTTCEEEESCCCSS-CCCCTTEEECCCC--HHHHHHHHHHHHHHTTCCSCEEEEESSHHHHHHHHHHHHHH
T ss_pred HHHHhhhhccCCCcEEECCCCcc-ccCCCCeEEEECC--HHHHHHHHHHHHHHcCCCeEEEEEcCCcHHHHHHHHHHHHH
Confidence 9999999 789999999876543 3233345677765 44578999999988999999999999999999999999999
Q ss_pred HhcCcEEEEEEecCCCCCCChHHHHHHHHHHhcCCceEEEEEcchhhHHHHHHHHHHcCCCCCceEEEEeCccc--cccc
Q 002211 207 AEIRCKISYKSALPPDQSVTETDVRNELVKVRMMEARVIVVHGYSRTGLMVFDVAQRLGMMDSGYVWIATTWLS--TFID 284 (953)
Q Consensus 207 ~~~g~~v~~~~~~~~~~~~~~~d~~~~l~~i~~~~~~vii~~~~~~~~~~~~~~a~~~g~~~~~~~wi~~~~~~--~~~~ 284 (953)
++.|++|+..+.|+.+ +|+...|+++ ..+||+|++.+++.++..+.++++..|... ..+.++++. +. .
T Consensus 147 ~~~Gg~vv~~~~y~~~-----~d~~~~l~~i-~~~pDaV~~~~~~~~~~~i~~~~~~~g~~~---pl~~~~~~~~~s~-~ 216 (325)
T 2h4a_A 147 QQLAGTDANIRYYNLP-----ADVTYFVQEN-NSNTTALYAVASPTELAEXKGYLTNIVPNL---AIYASSRASASAT-N 216 (325)
T ss_dssp HHHHSSCCEEEEESST-----THHHHHHHHS-TTCCCEEEECCCHHHHHHHHHHHTTTCTTC---EEEECGGGCCHHH-H
T ss_pred HHcCCCcceeEecCCH-----HHHHHHHHhc-CCCCCEEEEeCCHHHHhhhhhhHhhcCCCC---CEEEeccccccCC-C
Confidence 9999999998888754 5999999999 489999999999999998888888766433 466776665 22 1
Q ss_pred CCCCCchhhhhhccceEEEE-Ee--cCCChhhHHHHHHHHhhcCCCCCCCchhhHHhhHHHHHHHHHHHHHhcCCccccc
Q 002211 285 SKSPLSLKTAKSILGALTLR-QH--TPDSKRRRDFVSRWNTLSNGSIGLNPYGLYAYDTVWMIARALKLFLDQGNTISFS 361 (953)
Q Consensus 285 ~~~~~~~~~~~~~~g~~~~~-~~--~~~~~~~~~F~~~~~~~~~~~~~~~~~~~~~YDAv~~la~Al~~~~~~~~~~~~~ 361 (953)
. .......++|++... ++ .++.+.+++|.++|+..+ .+....+.+|||+.+++++ .++
T Consensus 217 ~----~~~~~~~~~Gv~f~~~p~~~~~~~~~~~~f~~~~~~~~----~~~rl~AlgyDA~~l~~~l-~~l---------- 277 (325)
T 2h4a_A 217 T----NTDFIAQMNGVQFSDIPFFKDTNSPQYQKLAKSTGGEY----QLMRLYAMGADAWLLINQF-NEL---------- 277 (325)
T ss_dssp T----CHHHHHHTTTCEEEECGGGSCCCSHHHHHHHHHTTTCH----HHHHHHHHHHHHHHHHHTH-HHH----------
T ss_pred C----CchhhhhcCCcEEEccccccCCCcHHHHHHHhccCCCc----chHHHHHHHHHHHHHHHHH-HHH----------
Confidence 1 134457789987665 33 345677888888876543 2456678999999986654 221
Q ss_pred CCCccCCCCCCcccCCCccccCchHHHHHHHHhcccCCcceeEEEccCCCCCCccEEEEEeecCCeeeEE
Q 002211 362 NDTKLNGLGGGTLNLGALSIFDGGKKFLANILQTNMTGLSGPIHFNQDRSLLHPSYDIINVIEHGYPQQI 431 (953)
Q Consensus 362 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~f~G~tG~v~Fd~~g~~~~~~y~I~~~~~~~~~~~V 431 (953)
+.+.+.+|+|+||.++||++|+ ......+.+++++.. +.|
T Consensus 278 ----------------------------~~~~~~~~~G~tG~l~~~~~g~-~~R~l~~~~~~~G~~-~~~ 317 (325)
T 2h4a_A 278 ----------------------------RQVPGYRLSGLTGILSADTNCN-VERDMTWYQYQDGAI-VPV 317 (325)
T ss_dssp ----------------------------HHSTTCCEEETTEEEEECTTCB-EEEECEEEEEETTEE-EEC
T ss_pred ----------------------------hhCCCCeeccCceeEEECCCCe-EEEeechhhccCCeE-EEe
Confidence 1133467999999999999998 477788888886665 443
No 37
>3ckm_A YRAM (HI1655), LPOA; periplasmic-binding protein, lipoprotein, unliganded, biosynthetic protein; 1.35A {Haemophilus influenzae} SCOP: c.93.1.1
Probab=99.96 E-value=5.4e-29 Score=273.80 Aligned_cols=313 Identities=10% Similarity=0.048 Sum_probs=241.6
Q ss_pred eEEEeEEEecCC---CchhHHHHHHHHHHHHHhcCCCCCCCcEEEEEEecCCCChHHHHHHHHHHHhcCcEEEEccCChh
Q 002211 49 VLNVGAIFSFGT---VNGQVSRIAMKAAQDDINSDPRVLGGRKLSITMHDAKFNGFLSIMGALQFMETDTLAIVGPQSAV 125 (953)
Q Consensus 49 ~i~IG~l~~~~~---~~g~~~~~a~~lAve~iN~~g~il~g~~l~l~~~D~~~~~~~a~~~a~~li~~~v~aiiGp~~S~ 125 (953)
.+|||+++|+|. .+|...++|+++|++ |++++++++|++++|.+++ ++.+.+++|.+||||.+|+
T Consensus 2 V~kIG~l~PlSG~~a~~G~~~~~g~~lA~~----------g~~i~l~~~D~~~~~~~aa--~~~~~~~~v~~iiGp~~s~ 69 (327)
T 3ckm_A 2 VSQIGLLLPLSGDGQILGTTIQSGFNDAKG----------NSTIPVQVFDTSMNSVQDI--IAQAKQAGIKTLVGPLLKQ 69 (327)
T ss_dssp -CCEEEEECCSSTTHHHHHHHHHHHHHHHT----------TCCSCEEEEETTTSCHHHH--HHHHHHTTCCEEECCCSHH
T ss_pred EEEEEEEECCCCchHHHHHHHHHHHHHhCC----------CCCceEEEEeCCCCHHHHH--HHHHHHcCCeEEEEccccc
Confidence 479999999984 458899999999963 5778999999999997663 4456667999999999999
Q ss_pred hHHHHHHhhh-hCCCcEEEeecCCCCCCCCCCCcEEEccCChHHHHHHHHHHHHHcCCcEEEEEEecCccccchHHHHHH
Q 002211 126 MAHVLSHLAN-ELQVPLLSFTALDPTLSPLQYPFFVQTAPNDLYLMSAIAEMVSYFGWGEVIAIFNDDDQGRNGVTALGD 204 (953)
Q Consensus 126 ~a~av~~v~~-~~~vP~Is~~at~~~ls~~~~p~~fr~~p~d~~~~~ai~~~l~~~~w~~vaii~~d~~~g~~~~~~l~~ 204 (953)
.+.+++.... ...+|+++.+++++ .. ..|++||+.+++..++.++++++...|+|++++++.|++||++..+.|++
T Consensus 70 ~~~a~~~~~~~~~~v~~~~~~~~~~-~~--~~~~~f~~~~~~~~~~~~~a~~~~~~g~k~~~ii~~~~~yg~~~~~~f~~ 146 (327)
T 3ckm_A 70 NLDVILADPAQIQGMDVLALNATPN-SR--AIPQLCYYGLSPEDEAESAANKMWNDGVRNPLVAMPQNDLGQRVGNAFNV 146 (327)
T ss_dssp HHHHHHHCGGGGTTCEEEESCCCTT-CC--CCTTEEECCCCHHHHHHHHHHHHHHTTCCSCEEEEESSHHHHHHHHHHHH
T ss_pred cchhhHHHHHhccCceEeccCcCcc-cc--cCCCeEEEecChHHHHHHHHHHHHhcCCeeEEEEecCChHHHHHHHHHHH
Confidence 8888776554 55566665444332 22 35899999999999999999999999999999999999999999999999
Q ss_pred HHHhcCcEEEEEEecCCCCCCChHHHHHHHHHHhcCCceEEEEEcchhhHHHHHHHHHHcCCCCCceEEEEeCccccccc
Q 002211 205 KLAEIRCKISYKSALPPDQSVTETDVRNELVKVRMMEARVIVVHGYSRTGLMVFDVAQRLGMMDSGYVWIATTWLSTFID 284 (953)
Q Consensus 205 ~l~~~g~~v~~~~~~~~~~~~~~~d~~~~l~~i~~~~~~vii~~~~~~~~~~~~~~a~~~g~~~~~~~wi~~~~~~~~~~ 284 (953)
.+++.|++|+..+.++.. +. ...+.+++..++|+|++.+.+.++..+++++++.|+.. .++.++++.....
T Consensus 147 ~~~~~Gg~vv~~~~~~~~----~~--~~~~~~~~~~~~dai~~~~~~~~~~~i~~q~~~~g~~~---~~~~~~~~~~~~~ 217 (327)
T 3ckm_A 147 RWQQLAGTDANIRYYNLP----AD--VTYFVQENNSNTTALYAVASPTELAEMKGYLTNIVPNL---AIYASSRASASAT 217 (327)
T ss_dssp HHHHHHSSCCEEEEESST----TH--HHHHHHHSCTTCCEEEECCCHHHHHHHHHHHTTTCTTC---EEEECGGGCCHHH
T ss_pred HHHHCCCeEEEEEECCCC----ch--hhHHHHHhccCCcEEEEEcCHHHHHHHHHHHHhhhccC---CEEeeeccccccc
Confidence 999999999999888765 33 35678889999999999999999999999999988754 4666665443221
Q ss_pred CCCCCchhhhhhccceEEEEE-e--cCCChhhHHHHHHHHhhcCCCCCCCchhhHHhhHHHHHHHHHHHHHhcCCccccc
Q 002211 285 SKSPLSLKTAKSILGALTLRQ-H--TPDSKRRRDFVSRWNTLSNGSIGLNPYGLYAYDTVWMIARALKLFLDQGNTISFS 361 (953)
Q Consensus 285 ~~~~~~~~~~~~~~g~~~~~~-~--~~~~~~~~~F~~~~~~~~~~~~~~~~~~~~~YDAv~~la~Al~~~~~~~~~~~~~ 361 (953)
... .......+|++.... + .++.+..++|.++|++.++ +..+.+.+|||+.+++++.+..
T Consensus 218 ~~~---~~~~~~~~g~~~~~~~~~~~~~~~~~~~f~~~~~~~~~----~~~~~AlgyDA~~l~~~l~~~~---------- 280 (327)
T 3ckm_A 218 NTN---TDFIAQMNGVQFSDIPFFKDTNSPQYQKLAKSTGGEYQ----LMRLYAMGADAWLLINQFNELR---------- 280 (327)
T ss_dssp HTC---HHHHHHTTTCEEEECGGGGCCCSHHHHHHHHHTTTCHH----HHHHHHHHHHHHHHHHTHHHHH----------
T ss_pred hhc---chhhhhcCCeEEEcccccCCCCCHHHHHHHHHHHhhcC----CCchHHHHHHHHHHHHHHHHhc----------
Confidence 111 222344677665543 2 4567888999999887764 2346778999998876554331
Q ss_pred CCCccCCCCCCcccCCCccccCchHHHHHHHHhcccCCcceeEEEccCCCCCCccEEEEEeecCCeeeEEEE
Q 002211 362 NDTKLNGLGGGTLNLGALSIFDGGKKFLANILQTNMTGLSGPIHFNQDRSLLHPSYDIINVIEHGYPQQIGY 433 (953)
Q Consensus 362 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~f~G~tG~v~Fd~~g~~~~~~y~I~~~~~~~~~~~VG~ 433 (953)
.+...+|+|++|.++||++|+ ....+.+.+++++.. ++|..
T Consensus 281 -----------------------------~~~~~~f~G~tG~i~fd~~G~-~~r~l~~~~~~~G~~-vpv~d 321 (327)
T 3ckm_A 281 -----------------------------QVPGYRLSGLTGILSADTNCN-VERDMTWYQYQDGAI-VPVVD 321 (327)
T ss_dssp -----------------------------HSTTCCEEETTEEEEECTTCB-EEEECEEEEEETTEE-EECC-
T ss_pred -----------------------------CCCCCCceeceEEEEECCCCC-CccccEEEEEECCEE-EEccc
Confidence 123356999999999999997 567778888877665 77664
No 38
>1yae_A Glutamate receptor, ionotropic kainate 2; kainate receptor, membrane protein; HET: NAG FUC DOQ; 3.11A {Rattus norvegicus} SCOP: c.94.1.1
Probab=99.94 E-value=3.8e-27 Score=257.51 Aligned_cols=273 Identities=23% Similarity=0.410 Sum_probs=197.0
Q ss_pred CCCcceEEEecCcccccccEEeeC------CcceEEEeeHHHHHHHHHhCCCcccEEEeeC---CCCCC-CCChHHHHHH
Q 002211 482 NNGRQLRIGVPNRVSYRDFVFKVN------GTDIVHGYCIDVFLAAVRLLPYAVPYKFIPY---GDGHK-NPTYSELINQ 551 (953)
Q Consensus 482 ~~g~~lri~v~~~~~~~p~~~~~~------~~~~~~G~~~dll~~la~~l~~~~~~~~~~~---~~~~~-n~~~~~~i~~ 551 (953)
..+++|||++.. ++||.+.++ +++++.|+++||++++++++|+++++..++. |.... +.+|++++.+
T Consensus 10 ~~~~~l~V~~~~---~~P~~~~~~~~~~~~~~g~~~G~~vdl~~~ia~~lg~~~~~~~~~~~~~g~~~~~~~~~~~~~~~ 86 (312)
T 1yae_A 10 LSNRSLIVTTIL---EEPYVLFKKSDKPLYGNDRFEGYCIDLLRELSTILGFTYEIRLVEDGKYGAQDDVNGQWNGMVRE 86 (312)
T ss_dssp TCSCEEEEEECC---BTTTBEECCCSSCCCGGGGEESHHHHHHHHHHHHHCCEEEEEECSSCCCCCBCTTTCCBCSHHHH
T ss_pred hcCceEEEEEec---cCCeeEEeccccccCCCceEEEEEHHHHHHHHHHcCCeEEEEecCCCccceeccCCCcchHHHHH
Confidence 356889999985 478888752 3688999999999999999998877766543 22222 5789999999
Q ss_pred HHcCceeEEEecEEEecCccceeeccccceecceEEEEeccc-CCcCcceeeccCchhHHHHHHHHHHHHHHHhhhhhcc
Q 002211 552 ITTGVFDAAVGDIAIVTNRTKAVDFTQPYIESGLVVVAPVRK-LNSSAWAFLRPFTPLMWAVTGVFFLVVGTVVWILEHR 630 (953)
Q Consensus 552 l~~g~~Di~~~~~~~t~~r~~~vdft~p~~~~~~~~~v~~~~-~~~~~~~~l~PF~~~vW~~i~~~~~~~~~~~~~l~~~ 630 (953)
|.+|++|+++++++++++|.+.++||.||+..+.+++++++. ...++|.|+.||+..
T Consensus 87 l~~g~~D~~~~~~~~t~eR~~~~~fs~py~~~~~~~~~~~~~~~~~~~~~~~~pf~~~---------------------- 144 (312)
T 1yae_A 87 LIDHKADLAVAPLAITYVREKVIDFSKPFMTLGISILYRKPNGTNPGVFSFLNGGSLV---------------------- 144 (312)
T ss_dssp HHTTSCSEECSSCBCCHHHHHHEEEEEEEEEECEEEEEEC----------------------------------------
T ss_pred HhCCCcCEEeecceechhhcceEEecceeeecceEEEEeCCccccccceeeecccccC----------------------
Confidence 999999999999999999999999999999999999999876 567899999999900
Q ss_pred cCCCCCCCCcccchhhHHHHHHHhhccccCCcccchhHHHHHHHHHHHHHhhhhcccceeeeeeeccccCCCCChHHhhh
Q 002211 631 LNDEFRGPPRKQIVTVLWFSFSTMFFAHRENTVSTLGRVVLIIWLFVVLIITSSYTASLTSILTVQQLSSPIKGIDTLMT 710 (953)
Q Consensus 631 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~s~~~R~l~~~w~~~~lil~~~Yta~L~s~Lt~~~~~~~I~sl~dL~~ 710 (953)
|+ |++++...|++++||..
T Consensus 145 -------------------------------p~------------------------------tv~~~~~~i~~~~dL~g 163 (312)
T 1yae_A 145 -------------------------------PR------------------------------GSERMESPIDSADDLAK 163 (312)
T ss_dssp -----------------------------------------------------------------------CCSHHHHHT
T ss_pred -------------------------------Cc------------------------------ccccccCCCCCHHHHhh
Confidence 00 45666688999999983
Q ss_pred C-CCeEEEEeCchHHHHHHHhhCCC-----------ccceEeCCCHHHHHHHHHcCCcEEEEccchhHHHHHhcCcceEE
Q 002211 711 S-NDRVGYQVGSFAENYLIEELSIP-----------KSRLVALGSPEEYAIALENRTVAAVVDERPYIDLFLSDHCQFSV 778 (953)
Q Consensus 711 ~-~~~ig~~~~s~~~~~l~~~~~~~-----------~~~~~~~~~~~~~~~~l~~g~~~a~~~~~~~~~~~~~~~~~l~~ 778 (953)
. +.+||+..++....++.+. ... ..+++.+++.++++++|.+|+ ||++.+...+.|++.+.|++.+
T Consensus 164 ~~~~~vg~v~~~~~~~~l~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~G~-Da~i~~~~~~~~~~~~~~~l~~ 241 (312)
T 1yae_A 164 QTKIEYGAVEDGATMTFFKKS-KISTYDKMWAFMSSRRQSVLVKSNEEGIQRVLTSD-YAFLMESTTIEFVTQRNCNLTQ 241 (312)
T ss_dssp CSSSEEECBTTSHHHHHHHHC-CBHHHHHHHHHHHHTHHHHCBSSHHHHHHHHHHSS-EEEEEEHHHHHHHHTTCTTEEE
T ss_pred ccCceEEEEeCChHHHHHHhc-cCchHHHHHHHHHhcCCCcccCCHHHHHHHHHcCC-cEEEeccHHHHHHHhcCCCEEE
Confidence 2 2279977666566666431 111 124566889999999999999 9999999999999988899999
Q ss_pred eCCccccCccEEEecCCCcchHHHHHHHHhhhccccHHHHHHHhcccCCCCCCCCCCCCCccccc
Q 002211 779 RGQEFTKSGWGFAFPRDSPLAIDMSTAILTLSENGELQRIHDKWLRKKACSSESSQSDSEQLQIQ 843 (953)
Q Consensus 779 ~~~~~~~~~~~~~~~k~spl~~~~n~~i~~l~e~G~~~~~~~~w~~~~~c~~~~~~~~~~~l~l~ 843 (953)
++..+...+++++++|++||++.||++|.+|.++|.+++|.+||+....|...+.. ++..++++
T Consensus 242 ~~~~~~~~~~~~a~~k~~~l~~~in~~l~~l~~~G~~~~i~~kw~~~~~c~~~~~~-~~~~~~~~ 305 (312)
T 1yae_A 242 IGGLIDSKGYGVGTPMGSPYRDKITIAILQLQEEGKLHMMKEKWWRGNGCPEEESK-EASALGVQ 305 (312)
T ss_dssp ESSCSSCEEEEEEEETTCSSHHHHHHHHHHHHHHTHHHHHHHHHHCCSCC---------------
T ss_pred ecccccccceEEEEeCCCCcHHHHHHHHHHHHHcCCHHHHHhhhcCCCCCCCCCCc-cchhhhhh
Confidence 99888888999999999999999999999999999999999999998899876544 44445443
No 39
>3g3k_A Glutamate receptor, ionotropic kainate 2; membrane protein, cell junction, cell membrane, glycoprotein, ION transport, ionic channel, membrane; HET: GLU IPA; 1.24A {Rattus norvegicus} PDB: 3g3j_A* 3g3i_A* 2i0b_A* 3g3h_A* 3g3g_A* 3g3f_A* 1s7y_A* 1s9t_A* 1sd3_A* 1tt1_A* 1s50_A* 2xxr_A* 2xxt_A* 2xxx_A* 2xxw_A* 2xxy_A* 2xxu_A* 2xxv_A* 3qxm_A* 2i0c_A* ...
Probab=99.92 E-value=4.5e-25 Score=234.18 Aligned_cols=235 Identities=23% Similarity=0.411 Sum_probs=196.8
Q ss_pred CCcceEEEecCcccccccEEeeCC------cceEEEeeHHHHHHHHHhCCCcccEEEeeCCC-CC---CCCChHHHHHHH
Q 002211 483 NGRQLRIGVPNRVSYRDFVFKVNG------TDIVHGYCIDVFLAAVRLLPYAVPYKFIPYGD-GH---KNPTYSELINQI 552 (953)
Q Consensus 483 ~g~~lri~v~~~~~~~p~~~~~~~------~~~~~G~~~dll~~la~~l~~~~~~~~~~~~~-~~---~n~~~~~~i~~l 552 (953)
.+++|||++.. ++||.+.+.. ++++.||++||++++++++|++++++.+|.+. |. .+++|++++.+|
T Consensus 2 ~~~~l~v~~~~---~~P~~~~~~~~~~~~~~g~~~G~~vdl~~~ia~~lg~~~~~~~~p~~~~g~~~~~~~~~~~~~~~l 78 (259)
T 3g3k_A 2 SNRSLIVTTIL---EEPYVLFKKSDKPLYGNDRFEGYCIDLLRELSTHLGFTYEIRLVEDGKYGAQDDVNGQWNGMVREL 78 (259)
T ss_dssp -CCCEEEEECC---BTTTBEECCCSSCCCGGGGEESHHHHHHHHHHHHHTCCEEEEECTTCCCCCBCTTTCCBCHHHHHH
T ss_pred CCcEEEEEEec---CCCeEEEeecccccCCCceeeeEHHHHHHHHHHHcCCeEEEEECCCCCcCcccCCCCcchHHHHHH
Confidence 36789999985 4788887653 58999999999999999999887777766321 21 156899999999
Q ss_pred HcCceeEEEecEEEecCccceeeccccceecceEEEEecccCCcCcceeeccCchhHHHHHHHHHHHHHHHhhhhhcccC
Q 002211 553 TTGVFDAAVGDIAIVTNRTKAVDFTQPYIESGLVVVAPVRKLNSSAWAFLRPFTPLMWAVTGVFFLVVGTVVWILEHRLN 632 (953)
Q Consensus 553 ~~g~~Di~~~~~~~t~~r~~~vdft~p~~~~~~~~~v~~~~~~~~~~~~l~PF~~~vW~~i~~~~~~~~~~~~~l~~~~~ 632 (953)
.+|++|++++++++|++|.+.++||.||...+.+++++++.
T Consensus 79 ~~g~~D~~~~~~~~t~eR~~~~~fs~py~~~~~~~~~~~~~--------------------------------------- 119 (259)
T 3g3k_A 79 IDHKADLAVAPLAITYVREEVIDFSKPFMTLGISILYRKGT--------------------------------------- 119 (259)
T ss_dssp HTTSCSEECSSCBCCHHHHTTEEECSCSEEECEEEEEESSS---------------------------------------
T ss_pred hcCcccEEEeeeEecccccceEeeeeeeeeCCEEEEEeCCc---------------------------------------
Confidence 99999999999999999999999999999999999998765
Q ss_pred CCCCCCCcccchhhHHHHHHHhhccccCCcccchhHHHHHHHHHHHHHhhhhcccceeeeeeeccccCCCCChHHhhhC-
Q 002211 633 DEFRGPPRKQIVTVLWFSFSTMFFAHRENTVSTLGRVVLIIWLFVVLIITSSYTASLTSILTVQQLSSPIKGIDTLMTS- 711 (953)
Q Consensus 633 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~s~~~R~l~~~w~~~~lil~~~Yta~L~s~Lt~~~~~~~I~sl~dL~~~- 711 (953)
+|++++||...
T Consensus 120 --------------------------------------------------------------------~i~~~~dL~g~~ 131 (259)
T 3g3k_A 120 --------------------------------------------------------------------PIDSADDLAKQT 131 (259)
T ss_dssp --------------------------------------------------------------------SCCSHHHHHTCS
T ss_pred --------------------------------------------------------------------cccCHHHhccCC
Confidence 58899999732
Q ss_pred CCeEEEEeCchHHHHHHHhhCCC-----------ccceEeCCCHHHHHHHHHcCCcEEEEccchhHHHHHhcCcceEEeC
Q 002211 712 NDRVGYQVGSFAENYLIEELSIP-----------KSRLVALGSPEEYAIALENRTVAAVVDERPYIDLFLSDHCQFSVRG 780 (953)
Q Consensus 712 ~~~ig~~~~s~~~~~l~~~~~~~-----------~~~~~~~~~~~~~~~~l~~g~~~a~~~~~~~~~~~~~~~~~l~~~~ 780 (953)
+..+|+..++....++.+. +.. ...++.+++.++++++|.+|+ ||++.+...+.|+.++.|++.+++
T Consensus 132 ~~~ig~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~-da~i~~~~~~~~~~~~~~~l~~~~ 209 (259)
T 3g3k_A 132 KIEYGAVEDGATMTFFKRS-KISTYDKMWAFMSSRRQSVLVKSNEEGIQRVLTSD-YAFLMESTTIEFVTQRNCNLTQIG 209 (259)
T ss_dssp SSEEEEETTSHHHHHHHHC-CSHHHHHHHHHHHHTHHHHEESSHHHHHHHHHHSS-EEEEEEHHHHHHHHHHCTTEEEES
T ss_pred CceEEEecCcHHHHHHhhc-cchhHHHHHHHHHhcCCCcccCCHHHHHHHHHhCC-eEEEechHHHHHHhcCCceEEEec
Confidence 2238888888777777442 111 113356789999999999999 999999999999998899999999
Q ss_pred CccccCccEEEecCCCcchHHHHHHHHhhhccccHHHHHHHhcccCCCC
Q 002211 781 QEFTKSGWGFAFPRDSPLAIDMSTAILTLSENGELQRIHDKWLRKKACS 829 (953)
Q Consensus 781 ~~~~~~~~~~~~~k~spl~~~~n~~i~~l~e~G~~~~~~~~w~~~~~c~ 829 (953)
..+...+++++++|++||++.||++|.+|.++|.+++|.+||+....|+
T Consensus 210 ~~~~~~~~~~a~~k~~~l~~~in~~l~~l~~~G~~~~i~~kw~~~~~c~ 258 (259)
T 3g3k_A 210 GLIDSKGYGVGTPMGSPYRDKITLAILKLQEQGKLHMMKEKWWRGNGCP 258 (259)
T ss_dssp SCSSCEEECCEEETTCTHHHHHHHHHHHHHHTC-CHHHHHHHHCC--CC
T ss_pred ccceeeeEEEEECCCCccHHHHHHHHHHHHhcChHHHHHHhhcCCCCCC
Confidence 9888889999999999999999999999999999999999999977786
No 40
>1pb7_A N-methyl-D-aspartate receptor subunit 1; ligand binding receptor, NR1, ligand binding protein; 1.35A {Rattus norvegicus} SCOP: c.94.1.1 PDB: 1pbq_A* 1y1m_A 1y1z_A 1y20_A 2a5t_A* 1pb8_A 1pb9_A
Probab=99.92 E-value=1.2e-25 Score=242.82 Aligned_cols=236 Identities=20% Similarity=0.391 Sum_probs=190.4
Q ss_pred cceEEEecCcccccccEEeeCCcceEEEeeHHHHHHHHHhCCCcccEEEeeCC-CCC---C----CCChHHHHHHHHcCc
Q 002211 485 RQLRIGVPNRVSYRDFVFKVNGTDIVHGYCIDVFLAAVRLLPYAVPYKFIPYG-DGH---K----NPTYSELINQITTGV 556 (953)
Q Consensus 485 ~~lri~v~~~~~~~p~~~~~~~~~~~~G~~~dll~~la~~l~~~~~~~~~~~~-~~~---~----n~~~~~~i~~l~~g~ 556 (953)
++|++++.. .|+||.+.+. ++++.||++||++++++++|++++++.++.+ .|. . +++|++++++|.+|+
T Consensus 41 ~~l~vg~~~--~~~P~~~~~~-~g~~~G~~vDll~~ia~~lg~~~~~~~~~d~~~g~~~~~~~~~~~~w~~~~~~l~~g~ 117 (292)
T 1pb7_A 41 KVICTGPND--TSPGSPRHTV-PQCCYGFCIDLLIKLARTMNFTYEVHLVADGKFGTQERVNNSNKKEWNGMMGELLSGQ 117 (292)
T ss_dssp CEEEEEEC----------CEE-EEEEESHHHHHHHHHHHHHTCCEEEEECTTCCCCCEEECTTSSCEEECHHHHHHHHTS
T ss_pred ceeecccCC--CCCCcccccc-ccCcceeHHHHHHHHHHHcCceEEEEEecCCcccccccccccccCcHHHHHHHHHcCC
Confidence 678888875 7888887765 6899999999999999999988766665432 121 1 247999999999999
Q ss_pred eeEEEecEEEecCccceeeccccceecceEEEEecccCCcCcceeeccCchhHHHHHHHHHHHHHHHhhhhhcccCCCCC
Q 002211 557 FDAAVGDIAIVTNRTKAVDFTQPYIESGLVVVAPVRKLNSSAWAFLRPFTPLMWAVTGVFFLVVGTVVWILEHRLNDEFR 636 (953)
Q Consensus 557 ~Di~~~~~~~t~~r~~~vdft~p~~~~~~~~~v~~~~~~~~~~~~l~PF~~~vW~~i~~~~~~~~~~~~~l~~~~~~~~~ 636 (953)
+|+++++++++++|.+.++||.||+..+.+++++++.
T Consensus 118 ~D~~~~~~~~t~~R~~~~~fs~Py~~~~~~i~~~~~~------------------------------------------- 154 (292)
T 1pb7_A 118 ADMIVAPLTINNERAQYIEFSKPFKYQGLTILVKKGT------------------------------------------- 154 (292)
T ss_dssp CSEECSSCBCCHHHHTTEEECSCSEEEEEEEEEETTC-------------------------------------------
T ss_pred cCEEEeeeEecHHHhcceEechhhHhcCeEEEEECCc-------------------------------------------
Confidence 9999999999999999999999999999999998765
Q ss_pred CCCcccchhhHHHHHHHhhccccCCcccchhHHHHHHHHHHHHHhhhhcccceeeeeeeccccCCCCChHHhhhCC---C
Q 002211 637 GPPRKQIVTVLWFSFSTMFFAHRENTVSTLGRVVLIIWLFVVLIITSSYTASLTSILTVQQLSSPIKGIDTLMTSN---D 713 (953)
Q Consensus 637 ~~~~~~~~~~~~~~~~~l~~~~~~~~~s~~~R~l~~~w~~~~lil~~~Yta~L~s~Lt~~~~~~~I~sl~dL~~~~---~ 713 (953)
.+++++||...+ .
T Consensus 155 ----------------------------------------------------------------~i~~~~dl~~~g~~~~ 170 (292)
T 1pb7_A 155 ----------------------------------------------------------------RITGINDPRLRNPSDK 170 (292)
T ss_dssp ----------------------------------------------------------------CCCSTTCHHHHSCBTT
T ss_pred ----------------------------------------------------------------CCCCCcCccccCcccc
Confidence 455667775333 2
Q ss_pred e-EEEEeCchHHHHHHHhhCC----CccceEeCCCHHHHHHHHHcCCcEEEEccchhHHHHHhcCcceEEeCCccccCcc
Q 002211 714 R-VGYQVGSFAENYLIEELSI----PKSRLVALGSPEEYAIALENRTVAAVVDERPYIDLFLSDHCQFSVRGQEFTKSGW 788 (953)
Q Consensus 714 ~-ig~~~~s~~~~~l~~~~~~----~~~~~~~~~~~~~~~~~l~~g~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 788 (953)
. +|+..++....++.+.... +..++..+.+.++++++|.+|++||++.+...+.|+++++|++.+++..+...++
T Consensus 171 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~G~vDa~i~d~~~~~~~~~~~~~l~~~~~~~~~~~~ 250 (292)
T 1pb7_A 171 FIYATVKQSSVDIYFRRQVELSTMYRHMEKHNYESAAEAIQAVRDNKLHAFIWDSAVLEFEASQKCDLVTTGELFFRSGF 250 (292)
T ss_dssp BCEECBTTSHHHHHHHTCGGGHHHHHHHTTTCBSSHHHHHHHHHTTSCSEEEEEHHHHHHHHHHCTTEEECSSCSEEEEE
T ss_pred eEEEEEcCchHHHHhhhcccHHHHHHHHHhhcCCCHHHHHHHHHcCCceEEEEcHHHHHHHHhcCCCEEEcCccccCCce
Confidence 3 5778888777777432110 1124456889999999999999999999999999999999999999988888899
Q ss_pred EEEecCCCcchHHHHHHHHhhhccccHHHHHHHhcccCCCCC
Q 002211 789 GFAFPRDSPLAIDMSTAILTLSENGELQRIHDKWLRKKACSS 830 (953)
Q Consensus 789 ~~~~~k~spl~~~~n~~i~~l~e~G~~~~~~~~w~~~~~c~~ 830 (953)
+++++|++||++.||++|.++.++|.+++|.+||+....|.+
T Consensus 251 ~ia~~k~~~l~~~in~al~~l~~~G~~~~l~~kw~~~~~c~~ 292 (292)
T 1pb7_A 251 GIGMRKDSPWKQNVSLSILKSHENGFMEDLDKTWVRYQECDS 292 (292)
T ss_dssp CCEEETTCSSHHHHHHHHHHHHHSSHHHHHHHHHTSSSCCCC
T ss_pred EEEEeCCCHHHHHHHHHHHHHHhCCCHHHHHHhhCCCCCCCC
Confidence 999999999999999999999999999999999999888863
No 41
>4h5g_A Amino acid ABC superfamily ATP binding cassette transporter, binding protein; center for structural genomics of infectious diseases (csgid national institute of allergy and infectious diseases; HET: ARG; 1.78A {Streptococcus pneumoniae} PDB: 4h5f_A*
Probab=99.92 E-value=2.4e-24 Score=226.04 Aligned_cols=220 Identities=22% Similarity=0.307 Sum_probs=191.9
Q ss_pred cceEEEecCcccccccEEee--CCcceEEEeeHHHHHHHHHhCCCcccEEEeeCCCCCCCCChHHHHHHHHcCceeEEEe
Q 002211 485 RQLRIGVPNRVSYRDFVFKV--NGTDIVHGYCIDVFLAAVRLLPYAVPYKFIPYGDGHKNPTYSELINQITTGVFDAAVG 562 (953)
Q Consensus 485 ~~lri~v~~~~~~~p~~~~~--~~~~~~~G~~~dll~~la~~l~~~~~~~~~~~~~~~~n~~~~~~i~~l~~g~~Di~~~ 562 (953)
++|+||+.. +|+||.+.+ ++++++.||++||++++++++|++++++. ..|++++..|.+|++|++++
T Consensus 12 g~L~Vg~~~--~~pP~~~~~~~d~~g~~~G~~vdl~~~ia~~lg~~~~~~~---------~~~~~~~~~l~~g~~d~~~~ 80 (243)
T 4h5g_A 12 GKLVVATSP--DYAPFEFQSLVDGKNQVVGADIDMAQAIADELGVKLEILS---------MSFDNVLTSLQTGKADLAVA 80 (243)
T ss_dssp TEEEEEECC--CBTTTBEEEEETTEEEEESHHHHHHHHHHHHHTSEEEEEE---------CCGGGHHHHHHTTSCSEECS
T ss_pred CEEEEEECC--CCCCcEeeeccCCCCcEEEeHHHHHHHHHHHhCCceEEec---------ccHHHHHHHHHcCCCCcccc
Confidence 579999975 899998853 45789999999999999999997755544 34999999999999999999
Q ss_pred cEEEecCccceeeccccceecceEEEEecccCCcCcceeeccCchhHHHHHHHHHHHHHHHhhhhhcccCCCCCCCCccc
Q 002211 563 DIAIVTNRTKAVDFTQPYIESGLVVVAPVRKLNSSAWAFLRPFTPLMWAVTGVFFLVVGTVVWILEHRLNDEFRGPPRKQ 642 (953)
Q Consensus 563 ~~~~t~~r~~~vdft~p~~~~~~~~~v~~~~~~~~~~~~l~PF~~~vW~~i~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ 642 (953)
++++|++|.+.++||.||+..+.++++++...
T Consensus 81 ~~~~t~eR~~~~~fs~py~~~~~~~~v~~~~~------------------------------------------------ 112 (243)
T 4h5g_A 81 GISATDERKEVFDFSIPYYENKISFLVHKADV------------------------------------------------ 112 (243)
T ss_dssp SCBCCHHHHTTEEECSCSBCCCEEEEEEGGGT------------------------------------------------
T ss_pred cccCChhHccEEEccCccccCccccccccccc------------------------------------------------
Confidence 99999999999999999999999999987761
Q ss_pred chhhHHHHHHHhhccccCCcccchhHHHHHHHHHHHHHhhhhcccceeeeeeeccccCCCCChHHhhhCCCeEEEEeCch
Q 002211 643 IVTVLWFSFSTMFFAHRENTVSTLGRVVLIIWLFVVLIITSSYTASLTSILTVQQLSSPIKGIDTLMTSNDRVGYQVGSF 722 (953)
Q Consensus 643 ~~~~~~~~~~~l~~~~~~~~~s~~~R~l~~~w~~~~lil~~~Yta~L~s~Lt~~~~~~~I~sl~dL~~~~~~ig~~~~s~ 722 (953)
..+++++||. +++||+..|+.
T Consensus 113 ---------------------------------------------------------~~~~~~~dl~--g~~i~v~~g~~ 133 (243)
T 4h5g_A 113 ---------------------------------------------------------EKYKDLTSLE--SANIAAQKGTV 133 (243)
T ss_dssp ---------------------------------------------------------TTCCSHHHHH--TSEEEEETTSH
T ss_pred ---------------------------------------------------------ccccccccCC--CCEEEecCCcH
Confidence 5788999997 89999999999
Q ss_pred HHHHHHHhhCCCccceEeCCCHHHHHHHHHcCCcEEEEccchhHHHHHhcCcceEEe---CCccccCccEEEecCCCc-c
Q 002211 723 AENYLIEELSIPKSRLVALGSPEEYAIALENRTVAAVVDERPYIDLFLSDHCQFSVR---GQEFTKSGWGFAFPRDSP-L 798 (953)
Q Consensus 723 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~g~~~a~~~~~~~~~~~~~~~~~l~~~---~~~~~~~~~~~~~~k~sp-l 798 (953)
...++.+.. +..+++.+++.++++++|.+|++|+++.+...+.+++.++..+... .......+++++++|++| |
T Consensus 134 ~~~~l~~~~--~~~~i~~~~~~~~~~~~l~~GrvD~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~k~~~~L 211 (243)
T 4h5g_A 134 PESMVKEQL--PKAQLTSLTNMGEAVNELQAGKIDAVHMDEPVALSYAAKNAGLAVATVSLKMKDGDANAVALRKNSDDL 211 (243)
T ss_dssp HHHHHHHHC--TTSEEEEESCHHHHHHHHHHTSCSEEEEEHHHHHHHHHHCTTEEECSCCCCCCSSCCBCCEEESSCHHH
T ss_pred HHHHHHHhc--ccceeEEeCCHHHHHHHHHcCCccEEEecHHHHHHHHHHCCCCceeeccCCcccCceEEEEEeCCCHHH
Confidence 988886644 4568889999999999999999999999999988888776654443 234445678999999999 9
Q ss_pred hHHHHHHHHhhhccccHHHHHHHhcc
Q 002211 799 AIDMSTAILTLSENGELQRIHDKWLR 824 (953)
Q Consensus 799 ~~~~n~~i~~l~e~G~~~~~~~~w~~ 824 (953)
++.||++|.+|.++|.+++|.+||+.
T Consensus 212 ~~~~n~aL~~l~~dG~~~~i~~Kw~~ 237 (243)
T 4h5g_A 212 KEVVDKVIQKLKDEGTYQSYLEKAAS 237 (243)
T ss_dssp HHHHHHHHHHHHHHTHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHCCHHHHHHHHhcC
Confidence 99999999999999999999999987
No 42
>2a5s_A N-methyl-D-aspartate receptor nmdar2A subunit, NMDA receptor nmdar2A; protein-ligand complex, metal transport,membrane protein; HET: GLU; 1.70A {Rattus norvegicus} SCOP: c.94.1.1 PDB: 2a5t_B* 3oen_A* 3oel_A* 3oem_A* 3oek_A*
Probab=99.91 E-value=1.7e-25 Score=240.74 Aligned_cols=241 Identities=20% Similarity=0.384 Sum_probs=189.3
Q ss_pred cCCCcceEEEecCcccccccEEeeC---CcceEEEeeHHHHHHHHHhCCCcccEEEeeCC-CCC-CCCChHHHHHHHHcC
Q 002211 481 PNNGRQLRIGVPNRVSYRDFVFKVN---GTDIVHGYCIDVFLAAVRLLPYAVPYKFIPYG-DGH-KNPTYSELINQITTG 555 (953)
Q Consensus 481 ~~~g~~lri~v~~~~~~~p~~~~~~---~~~~~~G~~~dll~~la~~l~~~~~~~~~~~~-~~~-~n~~~~~~i~~l~~g 555 (953)
|.+|++|||||+..++|++|....+ +.+++.|+++|+++++++++|+++++...+.+ .|. .+++|++++++|.+|
T Consensus 25 ~~~~~~lrvgv~~~~~~~~~~~~~~~~~~~~~~~G~~~dl~~~i~~~lg~~~~~~~~~~~~~g~~~~~~~~~~~~~l~~g 104 (284)
T 2a5s_A 25 PLTETCVRNTVPCRKFVKINNSTNEGMNVKKCCKGFCIDILKKLSRTVKFTYDLYLVTNGKHGKKVNNVWNGMIGEVVYQ 104 (284)
T ss_dssp CC-CCCCTTCEEEEEEEESSSSSSCEEEEEEEEESHHHHHHHHHHHHHTCCEEEEECCSSSSCCEETTEECHHHHHHHTT
T ss_pred CCCCccccccccccccccccccccCCCCCcceeeEEhHHHHHHHHHHCCCCEEEEEccCCccCcccCCCHHHHHHHHhcC
Confidence 4579999999998777777743221 13478999999999999999987666554422 122 457899999999999
Q ss_pred ceeEEEecEEEecCccceeeccccceecceEEEEecccCCcCcceeeccCchhHHHHHHHHHHHHHHHhhhhhcccCCCC
Q 002211 556 VFDAAVGDIAIVTNRTKAVDFTQPYIESGLVVVAPVRKLNSSAWAFLRPFTPLMWAVTGVFFLVVGTVVWILEHRLNDEF 635 (953)
Q Consensus 556 ~~Di~~~~~~~t~~r~~~vdft~p~~~~~~~~~v~~~~~~~~~~~~l~PF~~~vW~~i~~~~~~~~~~~~~l~~~~~~~~ 635 (953)
++|+++++++++++|.+.++||.||+.++.+++++++.
T Consensus 105 ~~D~~~~~~~~t~~R~~~~~fs~p~~~~~~~~~~~~~~------------------------------------------ 142 (284)
T 2a5s_A 105 RAVMAVGSLTINEERSEVVDFSVPFVETGISVMVSRGT------------------------------------------ 142 (284)
T ss_dssp SCSEECSSCBCCHHHHTTEEECCCCEEECEEEEEETTC------------------------------------------
T ss_pred CcCEEEEEEEEeccccceEEeccCchhcCEEEEEECCc------------------------------------------
Confidence 99999999999999999999999999999999999765
Q ss_pred CCCCcccchhhHHHHHHHhhccccCCcccchhHHHHHHHHHHHHHhhhhcccceeeeeeeccccCCCCChHHhhh-----
Q 002211 636 RGPPRKQIVTVLWFSFSTMFFAHRENTVSTLGRVVLIIWLFVVLIITSSYTASLTSILTVQQLSSPIKGIDTLMT----- 710 (953)
Q Consensus 636 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~s~~~R~l~~~w~~~~lil~~~Yta~L~s~Lt~~~~~~~I~sl~dL~~----- 710 (953)
++++++||..
T Consensus 143 -----------------------------------------------------------------~~~~~~dl~~~~~~~ 157 (284)
T 2a5s_A 143 -----------------------------------------------------------------QVTGLSDKKFQRPHD 157 (284)
T ss_dssp -----------------------------------------------------------------CCCSTTSHHHHSGGG
T ss_pred -----------------------------------------------------------------ccccccccccCChhH
Confidence 2333333331
Q ss_pred --CCCeEEEEeCchHHHHHHHhhCCCccceEeC--CCHHHHHHHHHcCCcEEEEccchhHHHHHhcC--cceEEeC--Cc
Q 002211 711 --SNDRVGYQVGSFAENYLIEELSIPKSRLVAL--GSPEEYAIALENRTVAAVVDERPYIDLFLSDH--CQFSVRG--QE 782 (953)
Q Consensus 711 --~~~~ig~~~~s~~~~~l~~~~~~~~~~~~~~--~~~~~~~~~l~~g~~~a~~~~~~~~~~~~~~~--~~l~~~~--~~ 782 (953)
.+.+||+..++.....+.+.+......++.+ ++.++++++|.+|++||++.+.+.+.|++++. |++.+++ ..
T Consensus 158 l~~~~~vg~v~~~s~~~~l~~~~~~~~~~i~~~~~~~~~~~l~~l~~G~vDa~i~d~~~~~~~~~~~~~~~l~~~~~~~~ 237 (284)
T 2a5s_A 158 YSPPFRFGTVPNGSTERNIRNNYPYMHQYMTRFNQRGVEDALVSLKTGKLDAFIYDAAVLNYKAGRDEGCKLVTIGSGYI 237 (284)
T ss_dssp SSSCCCEECCTTSHHHHHHHTTCHHHHHHHGGGCCSSHHHHHHHHHTTSCSEEEEEHHHHHHHHHTCTTSCEEEEECCCG
T ss_pred cCCCceEEEEeCCchHHHHHHHHHHHHHHHHhccCCCHHHHHHHHHcCCeeEEEEchHHHHHHHhcCCCCCEEEeCCccc
Confidence 2678997754444555543221000124445 79999999999999999999999999998874 7888874 56
Q ss_pred cccCccEEEecCCCcchHHHHHHHHhhhccccHHHHHHHhcccCCCC
Q 002211 783 FTKSGWGFAFPRDSPLAIDMSTAILTLSENGELQRIHDKWLRKKACS 829 (953)
Q Consensus 783 ~~~~~~~~~~~k~spl~~~~n~~i~~l~e~G~~~~~~~~w~~~~~c~ 829 (953)
+...+++++++|+++|++.||++|.++.++|.+++|.+||+. ..|.
T Consensus 238 ~~~~~~~~a~~k~~~l~~~ln~~l~~l~~~g~~~~i~~kw~~-~~c~ 283 (284)
T 2a5s_A 238 FATTGYGIALQKGSPWKRQIDLALLQFVGDGEMEELETLWLT-GICH 283 (284)
T ss_dssp GGCEEECCEEETTCTTHHHHHHHHHHHHHHTHHHHHHHHHTC-CCCC
T ss_pred cccCceEEEecCCCHHHHHHHHHHHHHHhCChHHHHHHHhhh-ccCC
Confidence 777889999999999999999999999999999999999998 4674
No 43
>2rc8_A Glutamate [NMDA] receptor subunit 3A; membrane protein, cell junction, glycoprotein, ION transport channel, magnesium; 1.45A {Rattus norvegicus} PDB: 2rc7_A 2rc9_A 2rca_A 2rcb_A
Probab=99.91 E-value=1.5e-24 Score=234.43 Aligned_cols=215 Identities=25% Similarity=0.463 Sum_probs=180.1
Q ss_pred eEEEeeHHHHHHHHHhCCCcccEEEeeCC-CCC-CCCChHHHHHHHHcCceeEEEecEEEecCccceeeccccceecceE
Q 002211 509 IVHGYCIDVFLAAVRLLPYAVPYKFIPYG-DGH-KNPTYSELINQITTGVFDAAVGDIAIVTNRTKAVDFTQPYIESGLV 586 (953)
Q Consensus 509 ~~~G~~~dll~~la~~l~~~~~~~~~~~~-~~~-~n~~~~~~i~~l~~g~~Di~~~~~~~t~~r~~~vdft~p~~~~~~~ 586 (953)
++.||++||++++++++|++++++.++.+ .|. .+++|++++++|.+|++|+++++++++++|.+.++||.||+..+.+
T Consensus 67 ~~~G~~vdll~~ia~~lg~~~~~~~~~~~~~g~~~~~~w~~~~~~l~~g~~D~~~~~~~~t~eR~~~~~fs~P~~~~~~~ 146 (294)
T 2rc8_A 67 CCYGYCIDLLEQLAEDMNFDFDLYIVGDGKYGAWKNGHWTGLVGDLLSGTANMAVTSFSINTARSQVIDFTSPFFSTSLG 146 (294)
T ss_dssp EEESHHHHHHHHHHHHHTEEEEEEECTTCCCCCEETTEECHHHHHHHHTSCSEECSSCBCCHHHHTTSEECSCSEEEEEE
T ss_pred CceEEhHHHHHHHHHHcCCcEEEEECCCCcccccCCCCHHHHHHHHHCCCcCEEEeccccCHhHhceEEEccchHhcceE
Confidence 58999999999999999987666554322 111 4578999999999999999999999999999999999999999999
Q ss_pred EEEecccCCcCcceeeccCchhHHHHHHHHHHHHHHHhhhhhcccCCCCCCCCcccchhhHHHHHHHhhccccCCcccch
Q 002211 587 VVAPVRKLNSSAWAFLRPFTPLMWAVTGVFFLVVGTVVWILEHRLNDEFRGPPRKQIVTVLWFSFSTMFFAHRENTVSTL 666 (953)
Q Consensus 587 ~~v~~~~~~~~~~~~l~PF~~~vW~~i~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~s~~ 666 (953)
++++++.
T Consensus 147 i~~~~~~------------------------------------------------------------------------- 153 (294)
T 2rc8_A 147 ILVRTRG------------------------------------------------------------------------- 153 (294)
T ss_dssp EEEETTS-------------------------------------------------------------------------
T ss_pred EEEECCC-------------------------------------------------------------------------
Confidence 9999876
Q ss_pred hHHHHHHHHHHHHHhhhhcccceeeeeeeccccCCCCChHHhh----hCCCeEEEEeCchHHHHHHHhhCCCc--cceEe
Q 002211 667 GRVVLIIWLFVVLIITSSYTASLTSILTVQQLSSPIKGIDTLM----TSNDRVGYQVGSFAENYLIEELSIPK--SRLVA 740 (953)
Q Consensus 667 ~R~l~~~w~~~~lil~~~Yta~L~s~Lt~~~~~~~I~sl~dL~----~~~~~ig~~~~s~~~~~l~~~~~~~~--~~~~~ 740 (953)
+.|++++||. ..+++||+..|+....++.+.+.... .+.+.
T Consensus 154 ---------------------------------~~i~~~~dL~~~~~~~g~~vg~~~gs~~~~~l~~~~~~~~~~i~~~~ 200 (294)
T 2rc8_A 154 ---------------------------------TELSGIHDPKLHHPSQGFRFGTVRESSAEDYVRQSFPEMHEYMRRYN 200 (294)
T ss_dssp ---------------------------------CCCCSTTCHHHHSCCTTCCEECBTTSHHHHHHHHHCHHHHHHHGGGC
T ss_pred ---------------------------------CCcCChhhhhhcCcccCeEEEEEcCChHHHHHHHHHHHHHHHHHHhc
Confidence 4677888886 23789999999998888865421000 11235
Q ss_pred CCCHHHHHHHHHc--CCcEEEEccchhHHHHHhc--CcceEEeCCccccCccEEEecCCCcchHHHHHHHHhhhccccHH
Q 002211 741 LGSPEEYAIALEN--RTVAAVVDERPYIDLFLSD--HCQFSVRGQEFTKSGWGFAFPRDSPLAIDMSTAILTLSENGELQ 816 (953)
Q Consensus 741 ~~~~~~~~~~l~~--g~~~a~~~~~~~~~~~~~~--~~~l~~~~~~~~~~~~~~~~~k~spl~~~~n~~i~~l~e~G~~~ 816 (953)
+.+.++++++|.+ |++||++.+...+.|++++ .|++.++++.+...+++++++|++||++.||++|.+|.++|.++
T Consensus 201 ~~~~~~~~~~l~~~~GrvDa~i~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~ia~~k~~~l~~~in~al~~l~~~G~~~ 280 (294)
T 2rc8_A 201 VPATPDGVQYLKNDPEKLDAFIMDKALLDYEVSIDADCKLLTVGKPFAIEGYGIGLPPNSPLTSNISELISQYKSHGFMD 280 (294)
T ss_dssp BSSHHHHHHHHHSSSCCCSEEEEEHHHHHHHHHTCSSSCEEECSCCEEEEEECCEECTTCTHHHHHHHHHHHHHHTTHHH
T ss_pred CCCHHHHHHHHHhccCceeEEEecHHHHHHHHhhCCCCCEEEcCCcccccceEEEecCCCHHHHHHHHHHHHHHhCCCHH
Confidence 7899999999999 9999999999999999876 57899999888888999999999999999999999999999999
Q ss_pred HHHHHhcccCCCC
Q 002211 817 RIHDKWLRKKACS 829 (953)
Q Consensus 817 ~~~~~w~~~~~c~ 829 (953)
+|.+||+....|.
T Consensus 281 ~l~~kw~~~~~c~ 293 (294)
T 2rc8_A 281 VLHDKWYKVVPCG 293 (294)
T ss_dssp HHHHHHCCC----
T ss_pred HHHHhhcCCCCCC
Confidence 9999999977785
No 44
>4gvo_A LMO2349 protein; structural genomics, IDP05245, L-cystine, ABC transporter, periplasmic binding protein, niaid; HET: HIS; 1.45A {Listeria monocytogenes} PDB: 2o1m_A
Probab=99.91 E-value=5.2e-24 Score=223.53 Aligned_cols=222 Identities=16% Similarity=0.214 Sum_probs=186.1
Q ss_pred CCcceEEEecCcccccccEEeeCCcceEEEeeHHHHHHHHHhC-CCcccEEEeeCCCCCCCCChHHHHHHHHcCceeEEE
Q 002211 483 NGRQLRIGVPNRVSYRDFVFKVNGTDIVHGYCIDVFLAAVRLL-PYAVPYKFIPYGDGHKNPTYSELINQITTGVFDAAV 561 (953)
Q Consensus 483 ~g~~lri~v~~~~~~~p~~~~~~~~~~~~G~~~dll~~la~~l-~~~~~~~~~~~~~~~~n~~~~~~i~~l~~g~~Di~~ 561 (953)
+.++|+||+.. +||||.+.+. ++++.||++||+++++++| |++++++. ..|++++..|.+|++|+++
T Consensus 7 ~~~tl~vg~~~--~~pP~~~~d~-~G~~~G~~vdl~~~ia~~l~g~~~~~~~---------~~~~~~~~~l~~g~~D~~~ 74 (243)
T 4gvo_A 7 KVQTITVGTGT--QFPNVCFLDE-NGKLTGYDVELVKEIDKRLPGYKFKFKT---------MDFSNLLVSLGAGKVDIVA 74 (243)
T ss_dssp -CEEEEEEECS--EETTTEEECT-TSCEESHHHHHHHHHHHTCTTEEEEEEE---------CCGGGHHHHHHTTSCSEEC
T ss_pred cCCeEEEEECC--CCCCeEEECC-CCcEEEhHHHHHHHHHHhccCCeEEEEE---------CCHHHHHHHHHCCCCCEec
Confidence 45789999976 8999999875 7899999999999999998 87655554 3499999999999999999
Q ss_pred ecEEEecCccceeeccccceecceEEEE-ecccCCcCcceeeccCchhHHHHHHHHHHHHHHHhhhhhcccCCCCCCCCc
Q 002211 562 GDIAIVTNRTKAVDFTQPYIESGLVVVA-PVRKLNSSAWAFLRPFTPLMWAVTGVFFLVVGTVVWILEHRLNDEFRGPPR 640 (953)
Q Consensus 562 ~~~~~t~~r~~~vdft~p~~~~~~~~~v-~~~~~~~~~~~~l~PF~~~vW~~i~~~~~~~~~~~~~l~~~~~~~~~~~~~ 640 (953)
+++++|++|.+.++||.||+.....+++ +...
T Consensus 75 ~~~~~t~eR~~~~~fs~p~~~~~~~~~~~~~~~----------------------------------------------- 107 (243)
T 4gvo_A 75 HQMEKSKEREKKFLFNDVAYNNFPLQLTVLDSN----------------------------------------------- 107 (243)
T ss_dssp SCCBCCHHHHHHSEECSSCCEECCEEEEEETTC-----------------------------------------------
T ss_pred ccCCCCHHHhhhhhhhhhhcccccceEEEeccc-----------------------------------------------
Confidence 9999999999999999997766555444 4444
Q ss_pred ccchhhHHHHHHHhhccccCCcccchhHHHHHHHHHHHHHhhhhcccceeeeeeeccccCCCCChHHhhhCCCeEEEEeC
Q 002211 641 KQIVTVLWFSFSTMFFAHRENTVSTLGRVVLIIWLFVVLIITSSYTASLTSILTVQQLSSPIKGIDTLMTSNDRVGYQVG 720 (953)
Q Consensus 641 ~~~~~~~~~~~~~l~~~~~~~~~s~~~R~l~~~w~~~~lil~~~Yta~L~s~Lt~~~~~~~I~sl~dL~~~~~~ig~~~~ 720 (953)
+.|++++||. |++||+..|
T Consensus 108 -----------------------------------------------------------~~~~~~~dL~--g~~v~v~~g 126 (243)
T 4gvo_A 108 -----------------------------------------------------------NSINSTKDLA--GKRVITSAT 126 (243)
T ss_dssp -----------------------------------------------------------CSCSSGGGGT--TCEEEECTT
T ss_pred -----------------------------------------------------------cccCchHHhc--CCeEEEecC
Confidence 6789999996 999999999
Q ss_pred chHHHHHHHh---hCCCccceEeCCCHHHHHHHHHcCCcEEEEccchhHHHHHhcC-cceEEeCCccccCccEEEecCCC
Q 002211 721 SFAENYLIEE---LSIPKSRLVALGSPEEYAIALENRTVAAVVDERPYIDLFLSDH-CQFSVRGQEFTKSGWGFAFPRDS 796 (953)
Q Consensus 721 s~~~~~l~~~---~~~~~~~~~~~~~~~~~~~~l~~g~~~a~~~~~~~~~~~~~~~-~~l~~~~~~~~~~~~~~~~~k~s 796 (953)
+....++.+. ..........+.+.++++++|.+|++||++.+...+.|+.++. .++.++++.+...+++++++|++
T Consensus 127 s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~GrvDa~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~ 206 (243)
T 4gvo_A 127 SNGALVLKKINEEQGNNFEIAYEGQGSNDTANQLKTGRADATISTPFAVDFQNKTSAIKEKVVGDVLSNAKVYFMLGKDE 206 (243)
T ss_dssp CHHHHHHHHHHHHTTSCSEEEECCSGGGSHHHHHHHTSCSBEEECHHHHHHHHHTCSSCEEEEEEEEECCEECCEECTTC
T ss_pred chHHHHHHHHHHhccccceeccccCChHHHHHHHHcCCccEEEccHHHHHHHHhhCCCceEEeccCCCCCcEEEEEeCCC
Confidence 8776666432 2222223345678899999999999999999999988887764 46788888888889999999999
Q ss_pred c-chHHHHHHHHhhhccccHHHHHHHhcc
Q 002211 797 P-LAIDMSTAILTLSENGELQRIHDKWLR 824 (953)
Q Consensus 797 p-l~~~~n~~i~~l~e~G~~~~~~~~w~~ 824 (953)
| |++.||++|.+|.++|.+++|.+||++
T Consensus 207 ~~l~~~in~~l~~l~~~G~~~~i~~kw~g 235 (243)
T 4gvo_A 207 TKLSKKVDEALQSIIDDGTLKKLSEKWLG 235 (243)
T ss_dssp HHHHHHHHHHHHHHHHTTHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHhCcHHHHHHHHHCC
Confidence 8 999999999999999999999999997
No 45
>3kzg_A Arginine 3RD transport system periplasmic binding protein; arginine transport system, protein structure initiative II(PSI II); 2.06A {Legionella pneumophila subsp} SCOP: c.94.1.0
Probab=99.90 E-value=4.8e-23 Score=215.25 Aligned_cols=218 Identities=17% Similarity=0.312 Sum_probs=194.5
Q ss_pred cceEEEecCcccccccEEe-eCCcceEEEeeHHHHHHHHHhCCCcccEEEeeCCCCCCCCChHHHHHHHHcCceeEEEec
Q 002211 485 RQLRIGVPNRVSYRDFVFK-VNGTDIVHGYCIDVFLAAVRLLPYAVPYKFIPYGDGHKNPTYSELINQITTGVFDAAVGD 563 (953)
Q Consensus 485 ~~lri~v~~~~~~~p~~~~-~~~~~~~~G~~~dll~~la~~l~~~~~~~~~~~~~~~~n~~~~~~i~~l~~g~~Di~~~~ 563 (953)
++|+||+.. +|+||.+. +. ++++.|+++|+++++++++|+++++...+ |.+++..+.+|++|+++++
T Consensus 3 ~~l~v~~~~--~~~P~~~~~~~-~g~~~G~~~dl~~~i~~~~g~~~~~~~~~---------~~~~~~~l~~g~~D~~~~~ 70 (237)
T 3kzg_A 3 LNLTIGTSK--FNPPFEVWSGN-NSSLYGFDIDLMQEICRRLHATCTFEAYI---------FDDLFPALKNREVDLVIAS 70 (237)
T ss_dssp CEEEEEEES--EETTTEECCCT-TSCCBSHHHHHHHHHHHHTTCEEEEEEEC---------GGGHHHHHHTTSSSEECSS
T ss_pred ceEEEEECC--CCCCeEEEeCC-CCCEeeehHHHHHHHHHHhCCceEEEEcC---------HHHHHHHHhCCCCCEEEEc
Confidence 679999985 79999998 64 78899999999999999999876666553 9999999999999999988
Q ss_pred EEEecCccceeeccccceecceEEEEecccCCcCcceeeccCchhHHHHHHHHHHHHHHHhhhhhcccCCCCCCCCcccc
Q 002211 564 IAIVTNRTKAVDFTQPYIESGLVVVAPVRKLNSSAWAFLRPFTPLMWAVTGVFFLVVGTVVWILEHRLNDEFRGPPRKQI 643 (953)
Q Consensus 564 ~~~t~~r~~~vdft~p~~~~~~~~~v~~~~~~~~~~~~l~PF~~~vW~~i~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~ 643 (953)
+..+++|.+.++||.||...+.++++++..
T Consensus 71 ~~~~~~r~~~~~fs~p~~~~~~~~~~~~~~-------------------------------------------------- 100 (237)
T 3kzg_A 71 MIITDERKKHFIFSLPYMESNSQYITTVDS-------------------------------------------------- 100 (237)
T ss_dssp CBCCTTGGGTCEECCCSBCCEEEEEEETTC--------------------------------------------------
T ss_pred cccChhHhccceeeeeeeecceEEEEECCC--------------------------------------------------
Confidence 999999999999999999999999998776
Q ss_pred hhhHHHHHHHhhccccCCcccchhHHHHHHHHHHHHHhhhhcccceeeeeeeccccCCCCChHHhhhCCCeEEEEeCchH
Q 002211 644 VTVLWFSFSTMFFAHRENTVSTLGRVVLIIWLFVVLIITSSYTASLTSILTVQQLSSPIKGIDTLMTSNDRVGYQVGSFA 723 (953)
Q Consensus 644 ~~~~~~~~~~l~~~~~~~~~s~~~R~l~~~w~~~~lil~~~Yta~L~s~Lt~~~~~~~I~sl~dL~~~~~~ig~~~~s~~ 723 (953)
+ +++++||. |++||+..|+..
T Consensus 101 --------------------------------------------------------~-~~~~~dL~--g~~i~~~~g~~~ 121 (237)
T 3kzg_A 101 --------------------------------------------------------K-ISTFDDLH--GKKIGVRKGTPY 121 (237)
T ss_dssp --------------------------------------------------------S-CCSGGGGT--TCEEEEETTSTH
T ss_pred --------------------------------------------------------C-CCCHHHhC--CCEEEEecCCHH
Confidence 3 88999996 899999999987
Q ss_pred HHHHHHhhCCCccceEeCCCHHHHHHHHHcCCcEEEEccchhHHHHHhcCc--------ceEEeCCcc-ccCccEEEecC
Q 002211 724 ENYLIEELSIPKSRLVALGSPEEYAIALENRTVAAVVDERPYIDLFLSDHC--------QFSVRGQEF-TKSGWGFAFPR 794 (953)
Q Consensus 724 ~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~g~~~a~~~~~~~~~~~~~~~~--------~l~~~~~~~-~~~~~~~~~~k 794 (953)
..++.+.. +..+++.+.+.++++++|.+|++|+++.+...+.+++.+.. ++.+++..+ ...+++++++|
T Consensus 122 ~~~~~~~~--~~~~~~~~~~~~~~~~~l~~G~vDa~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~k 199 (237)
T 3kzg_A 122 ARQVLSEN--RNNQVIFYELIQDMLLGLSNNQVDASLMDYEAAKYWMASEPYAYKLIGKKYKLIGKKISIGEGYSIMANP 199 (237)
T ss_dssp HHHHHHTC--SSCEEEEESSHHHHHHHHHTTSSSEEEEEHHHHHHHHTTSSTTHHHHCCSEEEEEEEEECTTCBCCEECG
T ss_pred HHHHHHhC--CCCcEEEeCCHHHHHHHHHcCCCCEEEeCcHHHHHHHHhCCccccccCCceEEecCccccCccEEEEEcC
Confidence 77775543 34678889999999999999999999999999999998855 788888777 78889999999
Q ss_pred CCc-chHHHHHHHHhhhccccHHHHHHHhccc
Q 002211 795 DSP-LAIDMSTAILTLSENGELQRIHDKWLRK 825 (953)
Q Consensus 795 ~sp-l~~~~n~~i~~l~e~G~~~~~~~~w~~~ 825 (953)
++| +++.||++|.++.++|.+++|.+||+..
T Consensus 200 ~~~~l~~~l~~~l~~l~~~G~~~~i~~k~~~~ 231 (237)
T 3kzg_A 200 DQFVLIKKINKILLEMEADGTYLRLYSEYFEG 231 (237)
T ss_dssp GGHHHHHHHHHHHHHHHHSSHHHHHHHHHC--
T ss_pred CCHHHHHHHHHHHHHHHHCCcHHHHHHHHhCc
Confidence 987 9999999999999999999999999983
No 46
>2v3u_A Glutamate receptor delta-2 subunit; postsynaptic membrane, ionotropic glutamate receptors, transmembrane, membrane protein; 1.74A {Rattus norvegicus} PDB: 2v3t_A
Probab=99.89 E-value=8.1e-23 Score=217.42 Aligned_cols=235 Identities=20% Similarity=0.336 Sum_probs=185.6
Q ss_pred CCcceEEEecCcccccccEEeeCC----cceEEEeeHHHHHHHHHhCCCcccEEEee---CCCCCCCCChHHHHHHHHcC
Q 002211 483 NGRQLRIGVPNRVSYRDFVFKVNG----TDIVHGYCIDVFLAAVRLLPYAVPYKFIP---YGDGHKNPTYSELINQITTG 555 (953)
Q Consensus 483 ~g~~lri~v~~~~~~~p~~~~~~~----~~~~~G~~~dll~~la~~l~~~~~~~~~~---~~~~~~n~~~~~~i~~l~~g 555 (953)
+|++|||++.. ++||.+.+.+ .+++.|+++|+++++++++|+++++...+ +|....+.+|++++..|.+|
T Consensus 1 ~~~~l~v~~~~---~pP~~~~~~~~~g~~g~~~G~~~dl~~~i~~~lg~~~~~~~~~~~~~g~~~~~~~~~~~~~~l~~g 77 (265)
T 2v3u_A 1 GGVVLRVVTVL---EEPFVMVSENVLGKPKKYQGFSIDVLDALSNYLGFNYEIYVAPDHKYGSPQEDGTWNGLVGELVFK 77 (265)
T ss_dssp CCCEEEEEECC---BTTTBEEECCSTTCCCEEESHHHHHHHHHHHHHTCEEEEEECTTCCCCCBCTTSCBCHHHHHHHTT
T ss_pred CCeEEEEEEec---cCCeEEEecCCCCCcceEeEEEHHHHHHHHHHcCCcEEEEEccCCcccccCCCCCcchHHHHHHcC
Confidence 47899999985 4888887642 17899999999999999999876666544 22222357899999999999
Q ss_pred ceeEEEecEEEecCccceeeccccceecceEEEEecccCCcCcceeeccCchhHHHHHHHHHHHHHHHhhhhhcccCCCC
Q 002211 556 VFDAAVGDIAIVTNRTKAVDFTQPYIESGLVVVAPVRKLNSSAWAFLRPFTPLMWAVTGVFFLVVGTVVWILEHRLNDEF 635 (953)
Q Consensus 556 ~~Di~~~~~~~t~~r~~~vdft~p~~~~~~~~~v~~~~~~~~~~~~l~PF~~~vW~~i~~~~~~~~~~~~~l~~~~~~~~ 635 (953)
++|+++++++++++|.+.++||.||+..+.+++++++.
T Consensus 78 ~~D~~~~~~~~t~~R~~~~~fs~p~~~~~~~~~~~~~~------------------------------------------ 115 (265)
T 2v3u_A 78 RADIGISALTITPDRENVVDFTTRYMDYSVGVLLRRGT------------------------------------------ 115 (265)
T ss_dssp SCSEECSSCBCCHHHHTTEEECSCSEEECEEEEEETTC------------------------------------------
T ss_pred CcCeEEeeeEeehhhhccccccceeeeccEEEEEECCC------------------------------------------
Confidence 99999988999999999999999999999999998755
Q ss_pred CCCCcccchhhHHHHHHHhhccccCCcccchhHHHHHHHHHHHHHhhhhcccceeeeeeeccccCCCCChHHhhhC-CCe
Q 002211 636 RGPPRKQIVTVLWFSFSTMFFAHRENTVSTLGRVVLIIWLFVVLIITSSYTASLTSILTVQQLSSPIKGIDTLMTS-NDR 714 (953)
Q Consensus 636 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~s~~~R~l~~~w~~~~lil~~~Yta~L~s~Lt~~~~~~~I~sl~dL~~~-~~~ 714 (953)
+|++++||.+. +..
T Consensus 116 -----------------------------------------------------------------~i~~~~dL~~~v~v~ 130 (265)
T 2v3u_A 116 -----------------------------------------------------------------SIQSLQDLSKQTDIP 130 (265)
T ss_dssp -----------------------------------------------------------------CCCSHHHHHTCSSSC
T ss_pred -----------------------------------------------------------------CccchhhhhhhhcEE
Confidence 47899999711 123
Q ss_pred EEEEeCchHHHHHHHhhCCCc------------------cceEeCCCHHHHHHHHHcCCcEEEEccchhHHHHHhc--Cc
Q 002211 715 VGYQVGSFAENYLIEELSIPK------------------SRLVALGSPEEYAIALENRTVAAVVDERPYIDLFLSD--HC 774 (953)
Q Consensus 715 ig~~~~s~~~~~l~~~~~~~~------------------~~~~~~~~~~~~~~~l~~g~~~a~~~~~~~~~~~~~~--~~ 774 (953)
.|...++....++.+. +... .++..+.+.++++++|.+|++ +++.+...+.|++.+ .|
T Consensus 131 ~g~~~~~~~~~~l~~~-~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~l~~G~~-a~~~~~~~~~~~~~~~~~~ 208 (265)
T 2v3u_A 131 YGTVLDSAVYQHVRMK-GLNPFERDSMYSQMWRMINRSNGSENNVLESQAGIQKVKYGNY-AFVWDAAVLEYVAINDPDC 208 (265)
T ss_dssp EECBTTSHHHHHHHHH-HTCTTCSCTHHHHHHHHHCC-----CCBSSHHHHHHHHHHSSC-EEEEEHHHHHHHHHHCTTC
T ss_pred EEEeccHHHHHHHHhc-CCCcccccHHHHHHHHHHHhhcCcccccCCHHHHHHHHHcCCE-EEEEcchHHHHHHhcCCCc
Confidence 4444555556666432 1111 123567899999999999999 888888888888765 46
Q ss_pred ceEEeCCccccCccEEEecCCCcchHHHHHHHHhhhccccHHHHHHHhcc-cCCCC
Q 002211 775 QFSVRGQEFTKSGWGFAFPRDSPLAIDMSTAILTLSENGELQRIHDKWLR-KKACS 829 (953)
Q Consensus 775 ~l~~~~~~~~~~~~~~~~~k~spl~~~~n~~i~~l~e~G~~~~~~~~w~~-~~~c~ 829 (953)
++.+++..+...+++++++|++||++.||++|.+|.++|.+++|.+||+. ...|.
T Consensus 209 ~l~~~~~~~~~~~~~~~~~k~~~l~~~in~~l~~l~~~g~~~~i~~kw~~~~~~c~ 264 (265)
T 2v3u_A 209 SFYTVGNTVADRGYGIALQHGSPYRDVFSQRILELQQSGDMDILKHKWWPKNGQCD 264 (265)
T ss_dssp CEEEEC---CCEEECCEEETTCTTHHHHHHHHHHHHHHTHHHHHHHHHCCCCCC--
T ss_pred cEEEeccccCCcceEEEEeCCCccHHHHHHHHHHHhhCChHHHHHhhcCCCcCcCC
Confidence 79999888778889999999999999999999999999999999999998 66774
No 47
>3i6v_A Periplasmic His/Glu/Gln/Arg/opine family-binding; structural genomics, transporter, PSI-2, protein structure initiative; HET: LYS; 2.00A {Silicibacter pomeroyi} SCOP: c.94.1.0
Probab=99.89 E-value=5.4e-23 Score=214.12 Aligned_cols=220 Identities=21% Similarity=0.361 Sum_probs=189.1
Q ss_pred CcceEEEecCcccccccEEeeCCcceEEEeeHHHHHHHHHhCCCcccEEEeeCCCCCCCCChHHHHHHHHcCceeEEEec
Q 002211 484 GRQLRIGVPNRVSYRDFVFKVNGTDIVHGYCIDVFLAAVRLLPYAVPYKFIPYGDGHKNPTYSELINQITTGVFDAAVGD 563 (953)
Q Consensus 484 g~~lri~v~~~~~~~p~~~~~~~~~~~~G~~~dll~~la~~l~~~~~~~~~~~~~~~~n~~~~~~i~~l~~g~~Di~~~~ 563 (953)
.++|||++.. .|+||.+.+. ++++.|+++|+++++++++|++++++.. +|.+++..+.+|++|+++++
T Consensus 4 a~~l~v~~~~--~~~P~~~~~~-~g~~~G~~~dl~~~i~~~~g~~~~~~~~---------~~~~~~~~l~~g~~D~~~~~ 71 (232)
T 3i6v_A 4 ADTVRMGTEG--AYPPYNFIND-AGEVDGFERELGDELCKRAGLTCEWVKN---------DWDSIIPNLVSGNYDTIIAG 71 (232)
T ss_dssp --CEEEEECS--EETTTEEECT-TSCEESHHHHHHHHHHHHHTCCEEEEEC---------CGGGHHHHHHTTSCSEECSS
T ss_pred CCEEEEEECC--CCCCeeEECC-CCCEeeehHHHHHHHHHHcCCceEEEEC---------CHHHHHHHHHCCCCCEEEeC
Confidence 5789999985 7999999875 6899999999999999999977665543 49999999999999999988
Q ss_pred EEEecCccceeeccccceecceEEEEecccCCcCcceeeccCchhHHHHHHHHHHHHHHHhhhhhcccCCCCCCCCcccc
Q 002211 564 IAIVTNRTKAVDFTQPYIESGLVVVAPVRKLNSSAWAFLRPFTPLMWAVTGVFFLVVGTVVWILEHRLNDEFRGPPRKQI 643 (953)
Q Consensus 564 ~~~t~~r~~~vdft~p~~~~~~~~~v~~~~~~~~~~~~l~PF~~~vW~~i~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~ 643 (953)
+..+++|.+.++||.||...+.++++++..
T Consensus 72 ~~~t~~r~~~~~fs~p~~~~~~~~~~~~~~-------------------------------------------------- 101 (232)
T 3i6v_A 72 MSITDERDEVIDFTQNYIPPTASSYVATSD-------------------------------------------------- 101 (232)
T ss_dssp CBCCHHHHTTSEEEEEEECCCEEEEEESST--------------------------------------------------
T ss_pred CcCCHHHHhhcCcccccccCCeEEEEECCC--------------------------------------------------
Confidence 999999999999999999999999987543
Q ss_pred hhhHHHHHHHhhccccCCcccchhHHHHHHHHHHHHHhhhhcccceeeeeeeccccCCCCChHHhhhCCCeEEEEeCchH
Q 002211 644 VTVLWFSFSTMFFAHRENTVSTLGRVVLIIWLFVVLIITSSYTASLTSILTVQQLSSPIKGIDTLMTSNDRVGYQVGSFA 723 (953)
Q Consensus 644 ~~~~~~~~~~l~~~~~~~~~s~~~R~l~~~w~~~~lil~~~Yta~L~s~Lt~~~~~~~I~sl~dL~~~~~~ig~~~~s~~ 723 (953)
++||. | +||+..|+..
T Consensus 102 -------------------------------------------------------------~~dL~--g-~igv~~g~~~ 117 (232)
T 3i6v_A 102 -------------------------------------------------------------GADLS--G-IVAAQTATIQ 117 (232)
T ss_dssp -------------------------------------------------------------TCCTT--S-EEEEETTSHH
T ss_pred -------------------------------------------------------------hHHhC--C-CEEEecCchH
Confidence 35664 7 9999999999
Q ss_pred HHHHHHhhCCCccceEeCCCHHHHHHHHHcCCcEEEEccchhHHHHHhcC-cceEEeCC-ccccCccEEEecCCCc-chH
Q 002211 724 ENYLIEELSIPKSRLVALGSPEEYAIALENRTVAAVVDERPYIDLFLSDH-CQFSVRGQ-EFTKSGWGFAFPRDSP-LAI 800 (953)
Q Consensus 724 ~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~g~~~a~~~~~~~~~~~~~~~-~~l~~~~~-~~~~~~~~~~~~k~sp-l~~ 800 (953)
..++.+. ..+++.+++.++++++|.+|++|+++.+...+.+++.+. .++.+++. .+...+++++++|++| +++
T Consensus 118 ~~~l~~~----~~~~~~~~~~~~~~~~L~~GrvDa~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~l~~ 193 (232)
T 3i6v_A 118 AGYIAES----GATLVEFATPEETIAAVRNGEADAVFADRDYLVPIVAESGGELMFVGDDVPLGGGVGMGLRESDGELRG 193 (232)
T ss_dssp HHHHHHS----SSEEEEESSHHHHHHHHHTTSSSEEEEEHHHHHHHHHHTTTSSEEEEEEEECSSCEEEEECTTCHHHHH
T ss_pred HHHHHhc----CCeEEEeCCHHHHHHHHHcCCcCEEEEChHHHHHHHHhCCCCeEEecCCCCCCCcEEEEEeCCCHHHHH
Confidence 9998653 467888999999999999999999999999999998876 67777765 4556789999999998 999
Q ss_pred HHHHHHHhhhccccHHHHHHHhcccCCCCCCCC
Q 002211 801 DMSTAILTLSENGELQRIHDKWLRKKACSSESS 833 (953)
Q Consensus 801 ~~n~~i~~l~e~G~~~~~~~~w~~~~~c~~~~~ 833 (953)
.||++|.++.++|.+++|.+||+....|.....
T Consensus 194 ~ln~~l~~l~~~G~~~~i~~k~~~~~~~~~~~~ 226 (232)
T 3i6v_A 194 KFDAAITSMKEDGTLNTMIKKWFGEDAAVYEEG 226 (232)
T ss_dssp HHHHHHHHHHHTSHHHHHHHHHHCTTSCCC---
T ss_pred HHHHHHHHHHHCChHHHHHHHHcCCCCCccccc
Confidence 999999999999999999999999666555443
No 48
>3k4u_A Binding component of ABC transporter; structural genomics, protein structure INI NEW YORK structural genomix research consortium, nysgxrc; HET: LYS; 2.62A {Wolinella succinogenes} SCOP: c.94.1.0
Probab=99.89 E-value=1.5e-22 Score=212.57 Aligned_cols=223 Identities=17% Similarity=0.271 Sum_probs=198.3
Q ss_pred CCcceEEEecCcccccccEEeeCCcceEEEeeHHHHHHHHHhCCCcccEEEeeCCCCCCCCChHHHHHHHHcCceeEEEe
Q 002211 483 NGRQLRIGVPNRVSYRDFVFKVNGTDIVHGYCIDVFLAAVRLLPYAVPYKFIPYGDGHKNPTYSELINQITTGVFDAAVG 562 (953)
Q Consensus 483 ~g~~lri~v~~~~~~~p~~~~~~~~~~~~G~~~dll~~la~~l~~~~~~~~~~~~~~~~n~~~~~~i~~l~~g~~Di~~~ 562 (953)
+.++|||++.. +|+||.+.+. ++++.|+++|+++++++++|++++++.. +|.+++.++.+|++|++++
T Consensus 3 ~~~~l~v~~~~--~~~P~~~~~~-~g~~~G~~~dl~~~i~~~~g~~~~~~~~---------~~~~~~~~l~~g~~D~~~~ 70 (245)
T 3k4u_A 3 LRGELRVGLEP--GYLPFEMKDK-KGNVIGFDVDLAREMAKAMGVKLKLVPT---------SWDGLIPGLVTEKFDIIIS 70 (245)
T ss_dssp CCSEEEEEECT--TSTTTCEEET-TTEEESHHHHHHHHHHHHHTCEEEEEEC---------CGGGHHHHHHTTSCSEECS
T ss_pred cCCeEEEEECC--CcCCeeEECC-CCCCccchHHHHHHHHHHhCCeEEEEEc---------cHHHHHHHHhCCCcCEEEe
Confidence 35689999984 7999999875 7899999999999999999977665543 4999999999999999988
Q ss_pred cEEEecCccceeeccccceecceEEEEecccCCcCcceeeccCchhHHHHHHHHHHHHHHHhhhhhcccCCCCCCCCccc
Q 002211 563 DIAIVTNRTKAVDFTQPYIESGLVVVAPVRKLNSSAWAFLRPFTPLMWAVTGVFFLVVGTVVWILEHRLNDEFRGPPRKQ 642 (953)
Q Consensus 563 ~~~~t~~r~~~vdft~p~~~~~~~~~v~~~~~~~~~~~~l~PF~~~vW~~i~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ 642 (953)
++..+++|.+.+.||.||...+.++++++...
T Consensus 71 ~~~~t~~r~~~~~~s~p~~~~~~~~~~~~~~~------------------------------------------------ 102 (245)
T 3k4u_A 71 GMTISQERNLRVNFVEPYIVVGQSLLVKKGLE------------------------------------------------ 102 (245)
T ss_dssp SCBCCHHHHTTSEECSCSEEECEEEEEETTTT------------------------------------------------
T ss_pred cCcCCHHHHhhcCcchhhheeceEEEEECCcc------------------------------------------------
Confidence 89999999999999999999999999988751
Q ss_pred chhhHHHHHHHhhccccCCcccchhHHHHHHHHHHHHHhhhhcccceeeeeeeccccCCCCChHHhhhCCCeEEEEeCch
Q 002211 643 IVTVLWFSFSTMFFAHRENTVSTLGRVVLIIWLFVVLIITSSYTASLTSILTVQQLSSPIKGIDTLMTSNDRVGYQVGSF 722 (953)
Q Consensus 643 ~~~~~~~~~~~l~~~~~~~~~s~~~R~l~~~w~~~~lil~~~Yta~L~s~Lt~~~~~~~I~sl~dL~~~~~~ig~~~~s~ 722 (953)
..|++++||...+++||+..|+.
T Consensus 103 ---------------------------------------------------------~~i~~~~dL~~~g~~i~v~~g~~ 125 (245)
T 3k4u_A 103 ---------------------------------------------------------KGVKSYKDLDKPELTLVTKFGVS 125 (245)
T ss_dssp ---------------------------------------------------------TTCCSGGGGCCSSCEEEEETTSH
T ss_pred ---------------------------------------------------------cccCCHHHhccCCcEEEEeCCcH
Confidence 47899999976689999999999
Q ss_pred HHHHHHHhhCCCccceEeCCCHHHHHHHHHcCCcEEEEccchhHHHHHhcC--cceEEeCCccccCccEEEecCCCc-ch
Q 002211 723 AENYLIEELSIPKSRLVALGSPEEYAIALENRTVAAVVDERPYIDLFLSDH--CQFSVRGQEFTKSGWGFAFPRDSP-LA 799 (953)
Q Consensus 723 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~g~~~a~~~~~~~~~~~~~~~--~~l~~~~~~~~~~~~~~~~~k~sp-l~ 799 (953)
...++.+.. +..+++.+++.++++++|.+|++|+++.+...+.+++.+. ..+..+...+...+++++++|++| ++
T Consensus 126 ~~~~l~~~~--~~~~~~~~~~~~~~~~~L~~GrvDa~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~l~ 203 (245)
T 3k4u_A 126 AEYAAKRLF--KNAKLKTYDTEAEAVQEVLNGKADMFIFDLPFNVAFMAQKGQGYLVHLDTSLTYEPLGWAIKKGDPDFL 203 (245)
T ss_dssp HHHHHHHHC--SSSEEEEESSHHHHHHHHHSSSSEEEEEEHHHHHHHHHHTTTTTEEEECCCCSCEEECCEECTTCHHHH
T ss_pred HHHHHHhhC--CcCCEEEeCCHHHHHHHHHcCCCcEEEEcHHHHHHHHhcCCccceeecCCCcccccEEEEEcCCCHHHH
Confidence 999886543 4567888999999999999999999999999998887764 468888888878899999999999 99
Q ss_pred HHHHHHHHhhhccccHHHHHHHhcc
Q 002211 800 IDMSTAILTLSENGELQRIHDKWLR 824 (953)
Q Consensus 800 ~~~n~~i~~l~e~G~~~~~~~~w~~ 824 (953)
+.||++|.++.++|.++++.++|+.
T Consensus 204 ~~ln~~l~~l~~~g~~~~i~~k~~~ 228 (245)
T 3k4u_A 204 NWLNHFLAQIKHDGSYDELYERWFV 228 (245)
T ss_dssp HHHHHHHHHHHHHSHHHHHHHHHHT
T ss_pred HHHHHHHHHHHhCcHHHHHHHHhcC
Confidence 9999999999999999999999998
No 49
>4f3p_A Glutamine-binding periplasmic protein; ssgcid, structural genomics, GLUT seattle structural genomics center for infectious disease; 2.40A {Burkholderia pseudomallei}
Probab=99.89 E-value=2.1e-22 Score=212.09 Aligned_cols=221 Identities=23% Similarity=0.466 Sum_probs=196.7
Q ss_pred CCCcceEEEecCcccccccEEeeCCcceEEEeeHHHHHHHHHhCCCcccEEEeeCCCCCCCCChHHHHHHHHcCceeEEE
Q 002211 482 NNGRQLRIGVPNRVSYRDFVFKVNGTDIVHGYCIDVFLAAVRLLPYAVPYKFIPYGDGHKNPTYSELINQITTGVFDAAV 561 (953)
Q Consensus 482 ~~g~~lri~v~~~~~~~p~~~~~~~~~~~~G~~~dll~~la~~l~~~~~~~~~~~~~~~~n~~~~~~i~~l~~g~~Di~~ 561 (953)
...++|+|++.. .|+||.+.. +++..|+++|+++.+++++|++++++..+ |.+++.++.+|++|+++
T Consensus 21 ~~~~~l~v~~~~--~~~P~~~~~--~g~~~G~~~dl~~~i~~~~g~~~~~~~~~---------~~~~~~~l~~g~~D~~~ 87 (249)
T 4f3p_A 21 SMAKELVVGTDT--SFMPFEFKQ--GDKYVGFDLDLWAEIAKGAGWTYKIQPMD---------FAGLIPALQTQNIDVAL 87 (249)
T ss_dssp ---CCEEEEEES--CBTTTBEEE--TTEEESHHHHHHHHHHHHHTCCEEEEEEC---------GGGHHHHHHTTSCSEEE
T ss_pred ccCceEEEEeCC--CCCCeEEec--CCeEEEEhHHHHHHHHHHcCCceEEEecC---------HHHHHHHHHCCCCCEEE
Confidence 356789999985 799999874 68899999999999999999887666654 99999999999999998
Q ss_pred ecEEEecCccceeeccccceecceEEEEecccCCcCcceeeccCchhHHHHHHHHHHHHHHHhhhhhcccCCCCCCCCcc
Q 002211 562 GDIAIVTNRTKAVDFTQPYIESGLVVVAPVRKLNSSAWAFLRPFTPLMWAVTGVFFLVVGTVVWILEHRLNDEFRGPPRK 641 (953)
Q Consensus 562 ~~~~~t~~r~~~vdft~p~~~~~~~~~v~~~~~~~~~~~~l~PF~~~vW~~i~~~~~~~~~~~~~l~~~~~~~~~~~~~~ 641 (953)
+++..+++|.+.++||.||.....++++++..
T Consensus 88 ~~~~~~~~r~~~~~~s~p~~~~~~~~~~~~~~------------------------------------------------ 119 (249)
T 4f3p_A 88 SGMTIKEERRKAIDFSDPYYDSGLAAMVQANN------------------------------------------------ 119 (249)
T ss_dssp EEEECCHHHHTTEEECSCCEEEEEEEEEETTC------------------------------------------------
T ss_pred eccccCHHHHcCcceecceeeccEEEEEECCC------------------------------------------------
Confidence 88999999999999999999999999998776
Q ss_pred cchhhHHHHHHHhhccccCCcccchhHHHHHHHHHHHHHhhhhcccceeeeeeeccccCCCCChHHhhhCCCeEEEEeCc
Q 002211 642 QIVTVLWFSFSTMFFAHRENTVSTLGRVVLIIWLFVVLIITSSYTASLTSILTVQQLSSPIKGIDTLMTSNDRVGYQVGS 721 (953)
Q Consensus 642 ~~~~~~~~~~~~l~~~~~~~~~s~~~R~l~~~w~~~~lil~~~Yta~L~s~Lt~~~~~~~I~sl~dL~~~~~~ig~~~~s 721 (953)
+.|++++||. |++||+..|+
T Consensus 120 ----------------------------------------------------------~~i~~~~dL~--g~~i~v~~g~ 139 (249)
T 4f3p_A 120 ----------------------------------------------------------TTIKSIDDLN--GKVIAAKTGT 139 (249)
T ss_dssp ----------------------------------------------------------CSCCSSGGGT--TSEEEEETTS
T ss_pred ----------------------------------------------------------CCcCChHHhC--CCEEEEeCCC
Confidence 5789999996 8999999999
Q ss_pred hHHHHHHHhhCCCccceEeCCCHHHHHHHHHcCCcEEEEccchhHHHHHhcCc--ceEEeCCccccCccEEEecCCCcch
Q 002211 722 FAENYLIEELSIPKSRLVALGSPEEYAIALENRTVAAVVDERPYIDLFLSDHC--QFSVRGQEFTKSGWGFAFPRDSPLA 799 (953)
Q Consensus 722 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~g~~~a~~~~~~~~~~~~~~~~--~l~~~~~~~~~~~~~~~~~k~spl~ 799 (953)
....++.+.. +..+++.+++.++++++|.+|++|+++.+...+.+++.+.. ++.+++..+...+++++++|++|+.
T Consensus 140 ~~~~~l~~~~--~~~~~~~~~~~~~~~~~L~~GrvDa~i~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~k~~~l~ 217 (249)
T 4f3p_A 140 ATIDWIKAHL--KPKEIRQFPNIDQAYLALEAGRVDAAMHDTPNVLFFVNNEGKGRVKVAGAPVSGDKYGIGFPKGSPLV 217 (249)
T ss_dssp HHHHHHHHHC--CCSEEEEESSHHHHHHHHHTTSSSEEEEEHHHHHHHHHTTTTTTEEEEEEEEEEEEEEEEEETTCTHH
T ss_pred hHHHHHHhcC--CCceEEEcCCHHHHHHHHHcCCeeEEEeCcHHHHHHHHhCCCCceEEecCCCCCccEEEEEcCCchHH
Confidence 9989886644 45678889999999999999999999999999999988754 5888888788889999999999999
Q ss_pred HHHHHHHHhhhccccHHHHHHHhccc
Q 002211 800 IDMSTAILTLSENGELQRIHDKWLRK 825 (953)
Q Consensus 800 ~~~n~~i~~l~e~G~~~~~~~~w~~~ 825 (953)
+.||++|.++.++|.+++|.+||+..
T Consensus 218 ~~l~~~l~~l~~~g~~~~i~~k~~~~ 243 (249)
T 4f3p_A 218 AKVNAELARMKADGRYAKIYKKWFGS 243 (249)
T ss_dssp HHHHHHHHHHHHHTHHHHHHHHHHSS
T ss_pred HHHHHHHHHHHhCCcHHHHHHHHcCC
Confidence 99999999999999999999999983
No 50
>1mqi_A Glutamate receptor 2; GLUR2, ligand binding core, S1S2, partial agonist, WILLARDIINES, fluoro-WILLARDIINE, membrane protein; HET: FWD; 1.35A {Rattus norvegicus} SCOP: c.94.1.1 PDB: 1ftj_A* 1ftl_A* 1fto_A 1fw0_A* 1m5b_A* 1ftm_A* 1m5c_A* 1mm6_A* 1mm7_A* 1mqg_A* 1m5e_A* 1mqj_A* 1ms7_A* 1mxu_A* 1mxv_A 1mxw_A 1mxx_A 1mxy_A 1mxz_A 1my0_A ...
Probab=99.89 E-value=1.6e-22 Score=215.05 Aligned_cols=232 Identities=19% Similarity=0.389 Sum_probs=189.2
Q ss_pred CcceEEEecCcccccccEEeeCC------cceEEEeeHHHHHHHHHhCCCcccEEEee---CCCCCCCC-ChHHHHHHHH
Q 002211 484 GRQLRIGVPNRVSYRDFVFKVNG------TDIVHGYCIDVFLAAVRLLPYAVPYKFIP---YGDGHKNP-TYSELINQIT 553 (953)
Q Consensus 484 g~~lri~v~~~~~~~p~~~~~~~------~~~~~G~~~dll~~la~~l~~~~~~~~~~---~~~~~~n~-~~~~~i~~l~ 553 (953)
+++|+|++. +|+||.+.+.+ ++++.||++|+++++++++|+++++...+ +|....+. +|++++.+|.
T Consensus 3 ~~~l~v~~~---~~pP~~~~~~~~~~~~~~g~~~G~~~dl~~~ia~~lg~~~~~~~~~~~~~g~~~~~~~~~~~~~~~l~ 79 (263)
T 1mqi_A 3 NKTVVVTTI---LESPYVMMKKNHEMLEGNERYEGYCVDLAAEIAKHCGFKYKLTIVGDGKYGARDADTKIWNGMVGELV 79 (263)
T ss_dssp CCCEEEEEC---CBTTTBEECTTGGGCCGGGGEESHHHHHHHHHHHHHTCCEEEEECTTCCCCCBCTTTCCBCHHHHHHH
T ss_pred CeEEEEEEe---cCCCcEEEecCcccccCCCceeeeHHHHHHHHHHHcCceEEEEEccccccCccCCCCCCcHHHHHHHH
Confidence 578999997 47999988753 48899999999999999999876666553 23222333 7999999999
Q ss_pred cCceeEEEecEEEecCccceeeccccceecceEEEEecccCCcCcceeeccCchhHHHHHHHHHHHHHHHhhhhhcccCC
Q 002211 554 TGVFDAAVGDIAIVTNRTKAVDFTQPYIESGLVVVAPVRKLNSSAWAFLRPFTPLMWAVTGVFFLVVGTVVWILEHRLND 633 (953)
Q Consensus 554 ~g~~Di~~~~~~~t~~r~~~vdft~p~~~~~~~~~v~~~~~~~~~~~~l~PF~~~vW~~i~~~~~~~~~~~~~l~~~~~~ 633 (953)
+|++|+++++++++++|.+.++||.||+..+.++++++..
T Consensus 80 ~g~~D~~~~~~~~t~~R~~~~~fs~p~~~~~~~~~~~~~~---------------------------------------- 119 (263)
T 1mqi_A 80 YGKADIAIAPLTITLVREEVIDFSKPFMSLGISIMIKKGT---------------------------------------- 119 (263)
T ss_dssp TTSCSEECSSCBCCHHHHTTEEECSCSEEECEEEEEETTC----------------------------------------
T ss_pred cCCcCEEEEeeEecHHHHhhcccccceecccEEEEEcCcc----------------------------------------
Confidence 9999999988999999999999999999999999998765
Q ss_pred CCCCCCcccchhhHHHHHHHhhccccCCcccchhHHHHHHHHHHHHHhhhhcccceeeeeeeccccCCCCChHHhhhCCC
Q 002211 634 EFRGPPRKQIVTVLWFSFSTMFFAHRENTVSTLGRVVLIIWLFVVLIITSSYTASLTSILTVQQLSSPIKGIDTLMTSND 713 (953)
Q Consensus 634 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~s~~~R~l~~~w~~~~lil~~~Yta~L~s~Lt~~~~~~~I~sl~dL~~~~~ 713 (953)
+|++++||. |+
T Consensus 120 -------------------------------------------------------------------~i~~~~dL~--g~ 130 (263)
T 1mqi_A 120 -------------------------------------------------------------------PIESAEDLS--KQ 130 (263)
T ss_dssp -------------------------------------------------------------------SCCSHHHHH--TC
T ss_pred -------------------------------------------------------------------ccCCHHHHh--cc
Confidence 478999997 55
Q ss_pred e---EEEEeCchHHHHHHHhhCCC-----------ccceEeCCCHHHHHHHH--HcCCcEEEEccchhHHHHHhcC-cce
Q 002211 714 R---VGYQVGSFAENYLIEELSIP-----------KSRLVALGSPEEYAIAL--ENRTVAAVVDERPYIDLFLSDH-CQF 776 (953)
Q Consensus 714 ~---ig~~~~s~~~~~l~~~~~~~-----------~~~~~~~~~~~~~~~~l--~~g~~~a~~~~~~~~~~~~~~~-~~l 776 (953)
+ +|+..++....++.+. +.. ..+++.+.+.++++++| .+|+ |+++.+...+.|++.+. |++
T Consensus 131 ~~~~ig~v~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~g~-da~~~~~~~~~~~~~~~~~~~ 208 (263)
T 1mqi_A 131 TEIAYGTLDSGSTKEFFRRS-KIAVFDKMWTYMRSAEPSVFVRTTAEGVARVRKSKGK-YAYLLESTMNEYIEQRKPCDT 208 (263)
T ss_dssp SSSEEECBSSSHHHHHHHHC-CSHHHHHHHHHHHHCSSCCCBSSHHHHHHHHHHTTTS-EEEEEEHHHHHHHTTSTTCCE
T ss_pred cCeeEEEEeccHHHHHHHhc-cchhHHHHHHHHhhCCCceecCCHHHHHHHHhhcCCc-EEEEechHHHHHHHhcCCCce
Confidence 5 5755433334444331 111 12466788999999999 8888 89999999998888764 578
Q ss_pred EEeCCccccCccEEEecCCCcchHHHHHHHHhhhccccHHHHHHHhcc-cCCCC
Q 002211 777 SVRGQEFTKSGWGFAFPRDSPLAIDMSTAILTLSENGELQRIHDKWLR-KKACS 829 (953)
Q Consensus 777 ~~~~~~~~~~~~~~~~~k~spl~~~~n~~i~~l~e~G~~~~~~~~w~~-~~~c~ 829 (953)
.+++..+...+++++++|+++|++.||++|.+|.++|.+++|.+||+. ...|.
T Consensus 209 ~~~~~~~~~~~~~~~~~k~~~l~~~in~~l~~l~~~g~~~~i~~k~~~~~~~C~ 262 (263)
T 1mqi_A 209 MKVGGNLDSKGYGIATPKGSSLGNAVNLAVLKLNEQGLLDKLKNKWWYDKGECG 262 (263)
T ss_dssp EEESCCSCCEEECCEEETTCTTHHHHHHHHHHHHHTTHHHHHHHHHHTTTCSCC
T ss_pred EEcCCcccccceEEEEeCCCccHHHHHHHHHHHHhcccHHHHHHHHcCCCCCCC
Confidence 888877777889999999999999999999999999999999999998 77785
No 51
>3del_B Arginine binding protein; alpha and beta protein (A/B), periplasmic protein, arginine protein binding, transport protein; 1.92A {Chlamydia trachomatis} SCOP: c.94.1.0
Probab=99.88 E-value=2.8e-22 Score=210.07 Aligned_cols=223 Identities=20% Similarity=0.315 Sum_probs=195.4
Q ss_pred CCcceEEEecCcccccccEEeeCCcceEEEeeHHHHHHHHHhCCCcccEEEeeCCCCCCCCChHHHHHHHHcCceeEEEe
Q 002211 483 NGRQLRIGVPNRVSYRDFVFKVNGTDIVHGYCIDVFLAAVRLLPYAVPYKFIPYGDGHKNPTYSELINQITTGVFDAAVG 562 (953)
Q Consensus 483 ~g~~lri~v~~~~~~~p~~~~~~~~~~~~G~~~dll~~la~~l~~~~~~~~~~~~~~~~n~~~~~~i~~l~~g~~Di~~~ 562 (953)
..++|+|++.. +|+||.+.+. ++++.|+++|+++.+++++|++++++.. +|.+++..|.+|++|++++
T Consensus 9 ~~~~l~v~~~~--~~~P~~~~~~-~g~~~G~~~dl~~~i~~~~g~~~~~~~~---------~~~~~~~~l~~g~~D~~~~ 76 (242)
T 3del_B 9 NSEKFIVGTNA--TYPPFEFVDK-RGEVVGFDIDLAREISNKLGKTLDVREF---------SFDALILNLKQHRIDAVIT 76 (242)
T ss_dssp --CEEEEEECS--CBTTTBEECT-TSCEESHHHHHHHHHHHHHTCEEEEEEC---------CGGGHHHHHHTTSSSEECS
T ss_pred cCCcEEEEeCC--CCCCeeEECC-CCCEEEeeHHHHHHHHHHcCCceEEEEc---------CHHHHHHHHhCCCcCEEEe
Confidence 34689999964 7999999875 7899999999999999999976555443 4999999999999999988
Q ss_pred cEEEecCccceeeccccce--ecceEEEEecccCCcCcceeeccCchhHHHHHHHHHHHHHHHhhhhhcccCCCCCCCCc
Q 002211 563 DIAIVTNRTKAVDFTQPYI--ESGLVVVAPVRKLNSSAWAFLRPFTPLMWAVTGVFFLVVGTVVWILEHRLNDEFRGPPR 640 (953)
Q Consensus 563 ~~~~t~~r~~~vdft~p~~--~~~~~~~v~~~~~~~~~~~~l~PF~~~vW~~i~~~~~~~~~~~~~l~~~~~~~~~~~~~ 640 (953)
++..+++|.+.++| .||. ..+.++++++..
T Consensus 77 ~~~~~~~r~~~~~~-~p~~~~~~~~~~~~~~~~----------------------------------------------- 108 (242)
T 3del_B 77 GMSITPSRLKEILM-IPYYGEEIKHLVLVFKGE----------------------------------------------- 108 (242)
T ss_dssp SBBCCHHHHTTEEE-EEEEEEEESEEEEEEESC-----------------------------------------------
T ss_pred cCcCCHHHHhcccc-eeeeecCCceEEEEeCCC-----------------------------------------------
Confidence 89999999999999 9999 888999988664
Q ss_pred ccchhhHHHHHHHhhccccCCcccchhHHHHHHHHHHHHHhhhhcccceeeeeeeccccCCCCChHHhhhCCCeEEEEeC
Q 002211 641 KQIVTVLWFSFSTMFFAHRENTVSTLGRVVLIIWLFVVLIITSSYTASLTSILTVQQLSSPIKGIDTLMTSNDRVGYQVG 720 (953)
Q Consensus 641 ~~~~~~~~~~~~~l~~~~~~~~~s~~~R~l~~~w~~~~lil~~~Yta~L~s~Lt~~~~~~~I~sl~dL~~~~~~ig~~~~ 720 (953)
.|++++||. |++||+..|
T Consensus 109 ------------------------------------------------------------~i~~~~dL~--g~~i~v~~g 126 (242)
T 3del_B 109 ------------------------------------------------------------NKHPLPLTQ--YRSVAVQTG 126 (242)
T ss_dssp ------------------------------------------------------------CSCCCCGGG--SSCEEEETT
T ss_pred ------------------------------------------------------------CCCCHHHhC--CCEEEEEcC
Confidence 678899996 889999999
Q ss_pred chHHHHHHHhhCCCccceEeCCCHHHHHHHHHcCCcEEEEccchhHHHHHhcCcceEEeCCccccCc----cEEEecCCC
Q 002211 721 SFAENYLIEELSIPKSRLVALGSPEEYAIALENRTVAAVVDERPYIDLFLSDHCQFSVRGQEFTKSG----WGFAFPRDS 796 (953)
Q Consensus 721 s~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~g~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~----~~~~~~k~s 796 (953)
+....++.+ .+..+++.+++.++++++|.+|++|+++.+...+.+++++...+.+++..+...+ ++++++|++
T Consensus 127 ~~~~~~l~~---~~~~~~~~~~~~~~~~~~L~~g~vDa~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~ 203 (242)
T 3del_B 127 TYQEAYLQS---LSEVHIRSFDSTLEVLMEVMHGKSPVAVLEPSIAQVVLKDFPALSTATIDLPEDQWVLGYGIGVASDR 203 (242)
T ss_dssp SHHHHHHHH---STTCCEEEESSHHHHHHHHHTTSSSEEEECHHHHHHHGGGCTTEEEEEEECCGGGCEEEEEEEEETTC
T ss_pred cHHHHHHHh---CCCceEEEECCHHHHHHHHHcCCCCEEEecHHHHHHHHHhCCCeEEecCccCcccccceEEEEEeCCC
Confidence 999998865 3556888899999999999999999999999999999988777888877666666 999999999
Q ss_pred c-chHHHHHHHHhhhccccHHHHHHHhcccCCCCC
Q 002211 797 P-LAIDMSTAILTLSENGELQRIHDKWLRKKACSS 830 (953)
Q Consensus 797 p-l~~~~n~~i~~l~e~G~~~~~~~~w~~~~~c~~ 830 (953)
| +++.||++|.++.++|.+++|.+||+....+..
T Consensus 204 ~~l~~~l~~~l~~l~~~g~~~~i~~k~~~~~~~~~ 238 (242)
T 3del_B 204 PALALKIEAAVQEIRKEGVLAELEQKWGLNNLEHH 238 (242)
T ss_dssp HHHHHHHHHHHHHHHHTTHHHHHHHHTTGGGCSST
T ss_pred HHHHHHHHHHHHHHHHcCCHHHHHHHHCCCCCccc
Confidence 8 999999999999999999999999998544443
No 52
>3hv1_A Polar amino acid ABC uptake transporter substrate binding protein; protein structure initiative II(PSI II), nysgxrc; 1.90A {Streptococcus thermophilus lmg 18311}
Probab=99.88 E-value=4.9e-22 Score=211.84 Aligned_cols=225 Identities=19% Similarity=0.361 Sum_probs=196.7
Q ss_pred CCcceEEEecCcccccccEEeeCCcceEEEeeHHHHHHHHHhCCCcccEEEeeCCCCCCCCChHHHHHHHHcCceeEEEe
Q 002211 483 NGRQLRIGVPNRVSYRDFVFKVNGTDIVHGYCIDVFLAAVRLLPYAVPYKFIPYGDGHKNPTYSELINQITTGVFDAAVG 562 (953)
Q Consensus 483 ~g~~lri~v~~~~~~~p~~~~~~~~~~~~G~~~dll~~la~~l~~~~~~~~~~~~~~~~n~~~~~~i~~l~~g~~Di~~~ 562 (953)
..++|||++.. +|+||.+.+. ++.+.|+++|+++.+++++|+++++... +|.+++.++.+|++|++++
T Consensus 19 ~~~~l~v~~~~--~~~P~~~~~~-~g~~~G~~~dl~~~i~~~~g~~~~~~~~---------~~~~~~~~l~~g~~D~~~~ 86 (268)
T 3hv1_A 19 KEKKIKIGFDA--TFVPMGYEEK-DGSYIGFDIDLANAVFKLYGIDVEWQAI---------DWDMKETELKNGTIDLIWN 86 (268)
T ss_dssp HHTEEEEEECT--EETTTEEECT-TSCEECHHHHHHHHHHHTTTCEEEEEEC---------CGGGHHHHHHHTSCSEECS
T ss_pred cCCcEEEEECC--CCCCceEECC-CCCEEEehHHHHHHHHHHhCCcEEEEEC---------CHHHHHHHHHCCCCCEEEe
Confidence 45789999986 7999999875 7899999999999999999977555543 4999999999999999998
Q ss_pred cEEEecCccceeeccccceecceEEEEecccCCcCcceeeccCchhHHHHHHHHHHHHHHHhhhhhcccCCCCCCCCccc
Q 002211 563 DIAIVTNRTKAVDFTQPYIESGLVVVAPVRKLNSSAWAFLRPFTPLMWAVTGVFFLVVGTVVWILEHRLNDEFRGPPRKQ 642 (953)
Q Consensus 563 ~~~~t~~r~~~vdft~p~~~~~~~~~v~~~~~~~~~~~~l~PF~~~vW~~i~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ 642 (953)
++..+.+|.+.++||.||.....++++++..
T Consensus 87 ~~~~t~~r~~~~~fs~p~~~~~~~~~~~~~~------------------------------------------------- 117 (268)
T 3hv1_A 87 GYSVTDERKQSADFTEPYMVNEQVLVTKKSS------------------------------------------------- 117 (268)
T ss_dssp SCBCCHHHHTTCEECCCCEEECEEEEEEGGG-------------------------------------------------
T ss_pred cCccCHHHHhcCcCcHHHeeCceEEEEECCC-------------------------------------------------
Confidence 8999999999999999999999999998655
Q ss_pred chhhHHHHHHHhhccccCCcccchhHHHHHHHHHHHHHhhhhcccceeeeeeeccccCCCCChHHhhhCCCeEEEEeCch
Q 002211 643 IVTVLWFSFSTMFFAHRENTVSTLGRVVLIIWLFVVLIITSSYTASLTSILTVQQLSSPIKGIDTLMTSNDRVGYQVGSF 722 (953)
Q Consensus 643 ~~~~~~~~~~~l~~~~~~~~~s~~~R~l~~~w~~~~lil~~~Yta~L~s~Lt~~~~~~~I~sl~dL~~~~~~ig~~~~s~ 722 (953)
.|++++||. |++||+..|+.
T Consensus 118 ----------------------------------------------------------~i~~~~dL~--g~~i~v~~g~~ 137 (268)
T 3hv1_A 118 ----------------------------------------------------------GIDSVAGMA--GKTLGAQAGSS 137 (268)
T ss_dssp ----------------------------------------------------------CCCSSGGGT--TCCEEEETTCH
T ss_pred ----------------------------------------------------------CCCCHHHhC--CCEEEEEeCCc
Confidence 678899995 89999999999
Q ss_pred HHHHHHHhhC-----CCccceEeCCCHHHHHHHHHcCCcEEEEccchhHHHHHhcC---cceEEeCCccccCccEEEecC
Q 002211 723 AENYLIEELS-----IPKSRLVALGSPEEYAIALENRTVAAVVDERPYIDLFLSDH---CQFSVRGQEFTKSGWGFAFPR 794 (953)
Q Consensus 723 ~~~~l~~~~~-----~~~~~~~~~~~~~~~~~~l~~g~~~a~~~~~~~~~~~~~~~---~~l~~~~~~~~~~~~~~~~~k 794 (953)
...++.+... .+..+++.+++.++++++|.+|++|+++.+...+.+++.+. +++.+++..+...+++++++|
T Consensus 138 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~GrvDa~i~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~k 217 (268)
T 3hv1_A 138 GYDAFNASPKILKDVVANQKVVQYSTFTQALIDLNSGRIDGLLIDRVYANYYLEKSGVLDQYNVMPAGYEGESFAVGARK 217 (268)
T ss_dssp HHHHHHHCTTTTTTTSGGGCEEEESSHHHHHHHHHHTSCSEEEEEHHHHHHHHHHTTCGGGEEEEECSSCCEEECCEECT
T ss_pred hHHHHHHhhHHHhhhcccceEEEeCCHHHHHHHHHcCCCCEEEeCHHHHHHHHHhCCCCCceEECCCCCCCCcEEEEEcC
Confidence 9888854321 22357788999999999999999999999999999988774 568888877778889999999
Q ss_pred CCc-chHHHHHHHHhhhccccHHHHHHHhcccCCC
Q 002211 795 DSP-LAIDMSTAILTLSENGELQRIHDKWLRKKAC 828 (953)
Q Consensus 795 ~sp-l~~~~n~~i~~l~e~G~~~~~~~~w~~~~~c 828 (953)
++| +++.||++|.++.++|.+++|.+||+....+
T Consensus 218 ~~~~l~~~ln~~l~~l~~~g~~~~i~~k~~~~~~~ 252 (268)
T 3hv1_A 218 VDKTLIKKINQGFETLYKNGEFQKISNKWFGEDVA 252 (268)
T ss_dssp TCHHHHHHHHHHHHHHHHHTHHHHHHHHHHSSCCC
T ss_pred CCHHHHHHHHHHHHHHHhCCHHHHHHHHhcCCCCC
Confidence 998 9999999999999999999999999984333
No 53
>3kbr_A Cyclohexadienyl dehydratase; pseudomonas aeruginos structural genomics, PSI-2, protein structure initiative; HET: EPE; 1.66A {Pseudomonas aeruginosa}
Probab=99.88 E-value=2.4e-22 Score=210.21 Aligned_cols=222 Identities=15% Similarity=0.246 Sum_probs=194.3
Q ss_pred CCcceEEEecCcccccccEEeeCCcceEEEeeHHHHHHHHHhCCCcccEEEeeCCCCCCCCChHHHHHHHHcCceeEEEe
Q 002211 483 NGRQLRIGVPNRVSYRDFVFKVNGTDIVHGYCIDVFLAAVRLLPYAVPYKFIPYGDGHKNPTYSELINQITTGVFDAAVG 562 (953)
Q Consensus 483 ~g~~lri~v~~~~~~~p~~~~~~~~~~~~G~~~dll~~la~~l~~~~~~~~~~~~~~~~n~~~~~~i~~l~~g~~Di~~~ 562 (953)
..++|+|++.. +|+||.+.+. ++++.|+++|+++++++++|+++++... +|.+++.+|.+|++|++++
T Consensus 13 ~~~~l~v~~~~--~~~P~~~~~~-~g~~~G~~~dl~~~i~~~~g~~~~~~~~---------~~~~~~~~l~~g~~D~~~~ 80 (239)
T 3kbr_A 13 ESGVLRVATTG--DYKPFSYRTE-EGGYAGFDVDMAQRLAESLGAKLVVVPT---------SWPNLMRDFADDRFDIAMS 80 (239)
T ss_dssp HHTEEEEEECS--EETTTEEECT-TSCEESHHHHHHHHHHHHTTCEEEEEEC---------CTTTHHHHHHTTCCSEECS
T ss_pred hCCeEEEEECC--CCCCeeEECC-CCCEEeehHHHHHHHHHHHCCceEEEEe---------CHHHHHHHHHCCCcCEEEe
Confidence 35789999974 7999999875 7899999999999999999977655543 4999999999999999988
Q ss_pred cEEEecCccceeeccccceecceEEEEecccCCcCcceeeccCchhHHHHHHHHHHHHHHHhhhhhcccCCCCCCCCccc
Q 002211 563 DIAIVTNRTKAVDFTQPYIESGLVVVAPVRKLNSSAWAFLRPFTPLMWAVTGVFFLVVGTVVWILEHRLNDEFRGPPRKQ 642 (953)
Q Consensus 563 ~~~~t~~r~~~vdft~p~~~~~~~~~v~~~~~~~~~~~~l~PF~~~vW~~i~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ 642 (953)
++..+++|.+.++||.||...+.++++++...
T Consensus 81 ~~~~t~~r~~~~~fs~p~~~~~~~~~~~~~~~------------------------------------------------ 112 (239)
T 3kbr_A 81 GISINLERQRQAYFSIPYLRDGKTPITLCSEE------------------------------------------------ 112 (239)
T ss_dssp SCBCCHHHHTTCEECSCSEEECEEEEEEGGGG------------------------------------------------
T ss_pred CCcCCHHHcCccccchHHhccCcEEEEECCcc------------------------------------------------
Confidence 89999999999999999999999999988761
Q ss_pred chhhHHHHHHHhhccccCCcccchhHHHHHHHHHHHHHhhhhcccceeeeeeeccccCCCCChHHhhhCCCeEEEEeCch
Q 002211 643 IVTVLWFSFSTMFFAHRENTVSTLGRVVLIIWLFVVLIITSSYTASLTSILTVQQLSSPIKGIDTLMTSNDRVGYQVGSF 722 (953)
Q Consensus 643 ~~~~~~~~~~~l~~~~~~~~~s~~~R~l~~~w~~~~lil~~~Yta~L~s~Lt~~~~~~~I~sl~dL~~~~~~ig~~~~s~ 722 (953)
..|++++||...+++||+..|+.
T Consensus 113 ---------------------------------------------------------~~i~~~~dL~~~g~~v~~~~g~~ 135 (239)
T 3kbr_A 113 ---------------------------------------------------------ARFQTLEQIDQPGVTAIVNPGGT 135 (239)
T ss_dssp ---------------------------------------------------------GGGSSHHHHSSTTCEEEECTTSH
T ss_pred ---------------------------------------------------------cccCCHHHhcCCCcEEEEcCCCc
Confidence 46889999976688999999999
Q ss_pred HHHHHHHhhCCCccceEeCCCHHHHHHHHHcCCcEEEEccchhHHHHHhcCcceEEeC--CccccCccEEEecCCCc-ch
Q 002211 723 AENYLIEELSIPKSRLVALGSPEEYAIALENRTVAAVVDERPYIDLFLSDHCQFSVRG--QEFTKSGWGFAFPRDSP-LA 799 (953)
Q Consensus 723 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~g~~~a~~~~~~~~~~~~~~~~~l~~~~--~~~~~~~~~~~~~k~sp-l~ 799 (953)
...++.+.. +..+++.+++.++++++|.+|++|+++.+...+.+++.+..++.++. ..+...+++++++| ++ ++
T Consensus 136 ~~~~l~~~~--~~~~~~~~~~~~~~~~~l~~grvDa~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k-~~~l~ 212 (239)
T 3kbr_A 136 NEKFARANL--KKARILVHPDNVTIFQQIVDGKADLMMTDAIEARLQSRLHPELCAVHPQQPFDFAEKAYLLPR-DEAFK 212 (239)
T ss_dssp HHHHHHHHC--SSSEEEECCCTTTHHHHHHTTSCSEEEEEHHHHHHHHHHCTTEEECCCC-CCCCEEECCEECS-CHHHH
T ss_pred HHHHHHHhC--CCCceEEeCCHHHHHHHHHcCCcCEEEEchHHHHHHHHhCCCcEEecCCCCccccceEEEEcC-CHHHH
Confidence 999886543 45678889999999999999999999999999999998877777765 34667789999999 66 99
Q ss_pred HHHHHHHHhhhccccHHHHHHHhcc
Q 002211 800 IDMSTAILTLSENGELQRIHDKWLR 824 (953)
Q Consensus 800 ~~~n~~i~~l~e~G~~~~~~~~w~~ 824 (953)
+.||++|.++.++|.++++.++|++
T Consensus 213 ~~ln~~l~~l~~~g~~~~i~~k~~~ 237 (239)
T 3kbr_A 213 RYVDQWLHIAEQSGLLRQRMEHWLE 237 (239)
T ss_dssp HHHHHHHHHHHHHTHHHHHHHHHC-
T ss_pred HHHHHHHHHHHHCCcHHHHHHHHhc
Confidence 9999999999999999999999986
No 54
>3tql_A Arginine-binding protein; transport and binding proteins, transport protein; HET: MSE ARG; 1.59A {Coxiella burnetii} SCOP: c.94.1.0
Probab=99.88 E-value=9.3e-22 Score=203.58 Aligned_cols=218 Identities=23% Similarity=0.404 Sum_probs=187.6
Q ss_pred cceEEEecCcccccccEEeeCCcceEEEeeHHHHHHHHHhCCCcccEEEeeCCCCCCCCChHHHHHHHHcCceeEEEecE
Q 002211 485 RQLRIGVPNRVSYRDFVFKVNGTDIVHGYCIDVFLAAVRLLPYAVPYKFIPYGDGHKNPTYSELINQITTGVFDAAVGDI 564 (953)
Q Consensus 485 ~~lri~v~~~~~~~p~~~~~~~~~~~~G~~~dll~~la~~l~~~~~~~~~~~~~~~~n~~~~~~i~~l~~g~~Di~~~~~ 564 (953)
++|||++.. +|+||.+.+. ++++.|+++|+++++++++|++++++.. +|.+++.++.+|++|++++++
T Consensus 2 ~~l~v~~~~--~~~P~~~~~~-~g~~~G~~~dl~~~i~~~~g~~~~~~~~---------~~~~~~~~l~~g~~D~~~~~~ 69 (227)
T 3tql_A 2 DTIKFATEA--TYPPYVYMGP-SGQVEGFGADIVKAVCKQMQAVCTISNQ---------PWDSLIPSLKLGKFDALFGGM 69 (227)
T ss_dssp CEEEEEECS--CBTTTBEEC---CCEESHHHHHHHHHHHHTTCEEEEEEC---------CHHHHHHHHHHTSCSEECSSC
T ss_pred ceEEEEEcC--CCCCeeEECC-CCCcccchHHHHHHHHHHhCCeEEEEeC---------CHHHHHHHHhCCCCCEEEecC
Confidence 579999975 7999998865 7889999999999999999977666543 499999999999999998889
Q ss_pred EEecCccceeeccccceecceEEEEecccCCcCcceeeccCchhHHHHHHHHHHHHHHHhhhhhcccCCCCCCCCcccch
Q 002211 565 AIVTNRTKAVDFTQPYIESGLVVVAPVRKLNSSAWAFLRPFTPLMWAVTGVFFLVVGTVVWILEHRLNDEFRGPPRKQIV 644 (953)
Q Consensus 565 ~~t~~r~~~vdft~p~~~~~~~~~v~~~~~~~~~~~~l~PF~~~vW~~i~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~ 644 (953)
..+++|.+.+.||.||...+.++++++..
T Consensus 70 ~~~~~r~~~~~~s~p~~~~~~~l~~~~~~--------------------------------------------------- 98 (227)
T 3tql_A 70 NITTARQKEVDFTDPYYTNSVSFIADKNT--------------------------------------------------- 98 (227)
T ss_dssp BCCTTGGGTEEECSCSBCCEEEEEEETTS---------------------------------------------------
T ss_pred cCCHhHHhheecccceeccceEEEEeCCC---------------------------------------------------
Confidence 99999999999999999999999998877
Q ss_pred hhHHHHHHHhhccccCCcccchhHHHHHHHHHHHHHhhhhcccceeeeeeeccccCCCCChHHhhhCCCeEEEEeCchHH
Q 002211 645 TVLWFSFSTMFFAHRENTVSTLGRVVLIIWLFVVLIITSSYTASLTSILTVQQLSSPIKGIDTLMTSNDRVGYQVGSFAE 724 (953)
Q Consensus 645 ~~~~~~~~~l~~~~~~~~~s~~~R~l~~~w~~~~lil~~~Yta~L~s~Lt~~~~~~~I~sl~dL~~~~~~ig~~~~s~~~ 724 (953)
+.+++++||. |++||+..|+...
T Consensus 99 -------------------------------------------------------~~~~~~~dL~--g~~v~~~~g~~~~ 121 (227)
T 3tql_A 99 -------------------------------------------------------PLTLSKQGLK--GKIIGVQGGTTFD 121 (227)
T ss_dssp -------------------------------------------------------CCCCSTTTTT--TCEEEEETTSHHH
T ss_pred -------------------------------------------------------CCCCCHHHhC--CCEEEEEecccHH
Confidence 3447899995 8999999999998
Q ss_pred HHHHHhhCCCccceEeCCCHHHHHHHHHcCCcEEEEccchhHHHHHhcCc--ceEEeCCcccc-----CccEEEecCCCc
Q 002211 725 NYLIEELSIPKSRLVALGSPEEYAIALENRTVAAVVDERPYIDLFLSDHC--QFSVRGQEFTK-----SGWGFAFPRDSP 797 (953)
Q Consensus 725 ~~l~~~~~~~~~~~~~~~~~~~~~~~l~~g~~~a~~~~~~~~~~~~~~~~--~l~~~~~~~~~-----~~~~~~~~k~sp 797 (953)
.++.+.... ..+++.+.+.++++++|.+|++|+++.+...+.+++++.. ++.+++..+.. .+++++++|++|
T Consensus 122 ~~l~~~~~~-~~~~~~~~~~~~~~~~l~~grvDa~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 200 (227)
T 3tql_A 122 SYLQDSFGN-SITIQRYPSEEDALMDLTSGRVDAVVGDTPLIKQWLKQNGRREYVLIGKPVNDPNYFGKGVGIAVKKGNQ 200 (227)
T ss_dssp HHHHHHHGG-GSEEEEESSHHHHHHHHTTTSSSEEESCHHHHHHHHHHTTCCSEEEEEEECCCGGGCCSCBCCEEETTCH
T ss_pred HHHHHhccc-cceEEEcCCHHHHHHHHHcCCcCEEEeChHHHHHHHHhCCCCCEEEecCcccCccccccceEEEEcCCCH
Confidence 888665421 1577889999999999999999999999999999888754 37776544333 356899999998
Q ss_pred -chHHHHHHHHhhhccccHHHHHHHhc
Q 002211 798 -LAIDMSTAILTLSENGELQRIHDKWL 823 (953)
Q Consensus 798 -l~~~~n~~i~~l~e~G~~~~~~~~w~ 823 (953)
+.+.||++|.++.++|.++++.+||+
T Consensus 201 ~l~~~l~~~l~~l~~~g~~~~i~~k~~ 227 (227)
T 3tql_A 201 ALLLKLNKALAAIKANGVYAAIVQKYF 227 (227)
T ss_dssp HHHHHHHHHHHHHHHTSHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHhCChHHHHHHhhC
Confidence 99999999999999999999999996
No 55
>1ii5_A SLR1257 protein; membrane protein; HET: GLU; 1.60A {Synechocystis SP} SCOP: c.94.1.1 PDB: 1iit_A 1iiw_A
Probab=99.87 E-value=2.2e-21 Score=201.74 Aligned_cols=218 Identities=21% Similarity=0.358 Sum_probs=189.9
Q ss_pred CcceEEEecCcccccccEEe--eCCcceEEEeeHHHHHHHHHhCCCcccEEEeeCCCCCCCCChHHHHHHHHcCceeEEE
Q 002211 484 GRQLRIGVPNRVSYRDFVFK--VNGTDIVHGYCIDVFLAAVRLLPYAVPYKFIPYGDGHKNPTYSELINQITTGVFDAAV 561 (953)
Q Consensus 484 g~~lri~v~~~~~~~p~~~~--~~~~~~~~G~~~dll~~la~~l~~~~~~~~~~~~~~~~n~~~~~~i~~l~~g~~Di~~ 561 (953)
.++|+|++. +|+||.+. +. ++++.|+++|+++.+++++|++++++.. ..|.+++..+.+|++|+++
T Consensus 3 ~~~l~v~~~---~~~P~~~~~~~~-~g~~~G~~~dl~~~i~~~~g~~~~~~~~--------~~~~~~~~~l~~g~~D~~~ 70 (233)
T 1ii5_A 3 AMALKVGVV---GNPPFVFYGEGK-NAAFTGISLDVWRAVAESQKWNSEYVRQ--------NSISAGITAVAEGELDILI 70 (233)
T ss_dssp SCCEEEEEC---CCTTTCEEC------CEESHHHHHHHHHHHHHTCCEEEEEC--------SCHHHHHHHHHTTSCSEEE
T ss_pred CceEEEEec---CCCCeEEEecCC-CCCEEEEeHHHHHHHHHHcCCcEEEEEe--------CCHHHHHHHHHCCCcCEEE
Confidence 467999997 48899987 43 6889999999999999999977655543 2599999999999999999
Q ss_pred ecEEEecCcc--ceeeccccceecceEEEEecccCCcCcceeeccCchhHHHHHHHHHHHHHHHhhhhhcccCCCCCCCC
Q 002211 562 GDIAIVTNRT--KAVDFTQPYIESGLVVVAPVRKLNSSAWAFLRPFTPLMWAVTGVFFLVVGTVVWILEHRLNDEFRGPP 639 (953)
Q Consensus 562 ~~~~~t~~r~--~~vdft~p~~~~~~~~~v~~~~~~~~~~~~l~PF~~~vW~~i~~~~~~~~~~~~~l~~~~~~~~~~~~ 639 (953)
+++..+.+|. +.++|+.||.....++++++...
T Consensus 71 ~~~~~~~~r~~~~~~~~s~p~~~~~~~~~~~~~~~--------------------------------------------- 105 (233)
T 1ii5_A 71 GPISVTPERAAIEGITFTQPYFSSGIGLLIPGTAT--------------------------------------------- 105 (233)
T ss_dssp EEEECCHHHHTSTTEEECCCCEEEEEEEEEEGGGT---------------------------------------------
T ss_pred eeeecCccccccceeEEccceeecCeEEEEECCCC---------------------------------------------
Confidence 8889999998 99999999999999999988761
Q ss_pred cccchhhHHHHHHHhhccccCCcccchhHHHHHHHHHHHHHhhhhcccceeeeeeeccccCCCCChHHhhhCCCeEEEEe
Q 002211 640 RKQIVTVLWFSFSTMFFAHRENTVSTLGRVVLIIWLFVVLIITSSYTASLTSILTVQQLSSPIKGIDTLMTSNDRVGYQV 719 (953)
Q Consensus 640 ~~~~~~~~~~~~~~l~~~~~~~~~s~~~R~l~~~w~~~~lil~~~Yta~L~s~Lt~~~~~~~I~sl~dL~~~~~~ig~~~ 719 (953)
..|.+++||. |++||+..
T Consensus 106 ------------------------------------------------------------~~i~~~~dL~--g~~v~~~~ 123 (233)
T 1ii5_A 106 ------------------------------------------------------------PLFRSVGDLK--NKEVAVVR 123 (233)
T ss_dssp ------------------------------------------------------------TTCSSGGGGT--TCEEEEET
T ss_pred ------------------------------------------------------------CCCCCHHHhC--CCeEEEEC
Confidence 2788999996 89999999
Q ss_pred CchHHHHHHHhhCCCccceEeCCCHHHHHHHHHcCCcEEEEccchhHHHHHhcCc--ceEEeCCccccCccEEEecCCCc
Q 002211 720 GSFAENYLIEELSIPKSRLVALGSPEEYAIALENRTVAAVVDERPYIDLFLSDHC--QFSVRGQEFTKSGWGFAFPRDSP 797 (953)
Q Consensus 720 ~s~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~g~~~a~~~~~~~~~~~~~~~~--~l~~~~~~~~~~~~~~~~~k~sp 797 (953)
|+....++.+. ..+++.+.+.++++++|.+|++|+++.+...+.+++.+.. ++.+++..+...+++++++|++|
T Consensus 124 g~~~~~~l~~~----~~~~~~~~~~~~~~~~l~~g~vDa~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~ 199 (233)
T 1ii5_A 124 DTTAVDWANFY----QADVRETNNLTAAITLLQKKQVEAVMFDRPALIYYTRQNPNLNLEVTEIRVSLEPYGFVLKENSP 199 (233)
T ss_dssp TSHHHHHHHHT----TCEEEEESSHHHHHHHHHTTSCSEEEEEHHHHHHHHHHCGGGCEEECSCCSEEEEEEEEEETTCT
T ss_pred CccHHHHHHHc----CCCeEEcCCHHHHHHHHHcCCccEEEeCHHHHHHHHHhCCCCcEEEeCccccccceEEEEcCCch
Confidence 99988888543 3467888999999999999999999999999999888754 68888877777789999999999
Q ss_pred chHHHHHHHHhhhccccHHHHHHHhcc
Q 002211 798 LAIDMSTAILTLSENGELQRIHDKWLR 824 (953)
Q Consensus 798 l~~~~n~~i~~l~e~G~~~~~~~~w~~ 824 (953)
+.+.+|++|.+|.++|.++++.+||+.
T Consensus 200 l~~~~~~~l~~l~~~g~~~~i~~k~~~ 226 (233)
T 1ii5_A 200 LQKTINVEMLNLLYSRVIAEFTERWLG 226 (233)
T ss_dssp THHHHHHHHHHHHHTTHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHhCCcHHHHHHHHcC
Confidence 999999999999999999999999997
No 56
>4eq9_A ABC transporter substrate-binding protein-amino A transport; structural genomics, niaid; HET: GSH; 1.40A {Streptococcus pneumoniae}
Probab=99.87 E-value=1.3e-21 Score=205.37 Aligned_cols=223 Identities=14% Similarity=0.212 Sum_probs=191.3
Q ss_pred CcceEEEecCcccccccEEeeCCcceEEEeeHHHHHHHHHhCC-CcccEEEeeCCCCCCCCChHHHHHHHHcCceeEEEe
Q 002211 484 GRQLRIGVPNRVSYRDFVFKVNGTDIVHGYCIDVFLAAVRLLP-YAVPYKFIPYGDGHKNPTYSELINQITTGVFDAAVG 562 (953)
Q Consensus 484 g~~lri~v~~~~~~~p~~~~~~~~~~~~G~~~dll~~la~~l~-~~~~~~~~~~~~~~~n~~~~~~i~~l~~g~~Di~~~ 562 (953)
.++|+|++.. .|+||.+. . ++++.|+++|+++.+++++| +++++... +|.+++.+|.+|++|++++
T Consensus 7 ~~~l~v~~~~--~~~P~~~~-~-~g~~~G~~~dl~~~i~~~~g~~~~~~~~~---------~~~~~~~~l~~g~~D~~~~ 73 (246)
T 4eq9_A 7 KKEIIVATNG--SPRPFIYE-E-NGELTGYEIEVVRAIFKDSDKYDVKFEKT---------EWSGVFAGLDADRYNMAVN 73 (246)
T ss_dssp CEEEEEEECC--CSTTTSEE-E-TTEEESHHHHHHHHHHTTCSSEEEEEEEC---------CHHHHHHHHHTTSCSEECS
T ss_pred CCEEEEEeCC--CcCCeEEc-C-CCCCcccHHHHHHHHHHHcCCceEEEEeC---------CHHHHHHHHhCCCcCEEec
Confidence 4689999986 78999984 3 78999999999999999999 88776654 4999999999999999998
Q ss_pred cEEEecCccceeeccccceecceEEEEecccCCcCcceeeccCchhHHHHHHHHHHHHHHHhhhhhcccCCCCCCCCccc
Q 002211 563 DIAIVTNRTKAVDFTQPYIESGLVVVAPVRKLNSSAWAFLRPFTPLMWAVTGVFFLVVGTVVWILEHRLNDEFRGPPRKQ 642 (953)
Q Consensus 563 ~~~~t~~r~~~vdft~p~~~~~~~~~v~~~~~~~~~~~~l~PF~~~vW~~i~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ 642 (953)
++..+++|.+.++||.||...+.++++++..
T Consensus 74 ~~~~~~~r~~~~~~s~p~~~~~~~~~~~~~~------------------------------------------------- 104 (246)
T 4eq9_A 74 NLSYTKERAEKYLYAAPIAQNPNVLVVKKDD------------------------------------------------- 104 (246)
T ss_dssp SCCCCHHHHHHEEECCCCEECCEEEEEETTC-------------------------------------------------
T ss_pred ccccChhhhhceeeccceecCceEEEEECCC-------------------------------------------------
Confidence 8999999999999999999999999999855
Q ss_pred chhhHHHHHHHhhccccCCcccchhHHHHHHHHHHHHHhhhhcccceeeeeeeccccCCCCChHHhhhCCCeEEEEeCch
Q 002211 643 IVTVLWFSFSTMFFAHRENTVSTLGRVVLIIWLFVVLIITSSYTASLTSILTVQQLSSPIKGIDTLMTSNDRVGYQVGSF 722 (953)
Q Consensus 643 ~~~~~~~~~~~l~~~~~~~~~s~~~R~l~~~w~~~~lil~~~Yta~L~s~Lt~~~~~~~I~sl~dL~~~~~~ig~~~~s~ 722 (953)
.+|++++||. |++||+..|+.
T Consensus 105 ---------------------------------------------------------~~i~~~~dL~--g~~i~~~~g~~ 125 (246)
T 4eq9_A 105 ---------------------------------------------------------SSIKSLDDIG--GKSTEVVQATT 125 (246)
T ss_dssp ---------------------------------------------------------CSCSSGGGCT--TCEEEECTTCH
T ss_pred ---------------------------------------------------------CCCCCHHHhC--CCEEEEecCcc
Confidence 4788999996 89999999999
Q ss_pred HHHHHHH---hhCCCccceE-eCCCHHHHHHHHHcCCcEEEEccchhHHHHHhcCc--ceEEeCCccccCc-cEEEecCC
Q 002211 723 AENYLIE---ELSIPKSRLV-ALGSPEEYAIALENRTVAAVVDERPYIDLFLSDHC--QFSVRGQEFTKSG-WGFAFPRD 795 (953)
Q Consensus 723 ~~~~l~~---~~~~~~~~~~-~~~~~~~~~~~l~~g~~~a~~~~~~~~~~~~~~~~--~l~~~~~~~~~~~-~~~~~~k~ 795 (953)
...++.+ .......++. ...+.++++++|.+|++|+++.+...+.+++++.. ++.++.......+ ++++++|+
T Consensus 126 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~g~vDa~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~ 205 (246)
T 4eq9_A 126 SAKQLEAYNAEHTDNPTILNYTKADFQQIMVRLSDGQFDYKIFDKIGVETVIKNQGLDNLKVIELPSDQQPYVYPLLAQG 205 (246)
T ss_dssp HHHHHHHHHHHCTTSCCEEEECCCCHHHHHHHHHTTSSSEEEEEHHHHHHHHHHHTCTTEEEEECCCSSCCEECCEEETT
T ss_pred HHHHHHHHHhhCCCcceEEEecCCCHHHHHHHHHcCCceEEEecHHHHHHHHHhCCCCCceEecCcCCCCCcEEEEEcCC
Confidence 8888865 3322223343 23589999999999999999999999999887743 6888876665555 88999999
Q ss_pred Cc-chHHHHHHHHhhhccccHHHHHHHhcccCC
Q 002211 796 SP-LAIDMSTAILTLSENGELQRIHDKWLRKKA 827 (953)
Q Consensus 796 sp-l~~~~n~~i~~l~e~G~~~~~~~~w~~~~~ 827 (953)
+| +++.||++|.++.++|.+++|.++|++...
T Consensus 206 ~~~l~~~ln~~l~~l~~~g~~~~i~~k~~~~~~ 238 (246)
T 4eq9_A 206 QDELKSFVDKRIKELYKDGTLEKLSKQFFGDTY 238 (246)
T ss_dssp CHHHHHHHHHHHHHHHHTTHHHHHHHHHHSSCC
T ss_pred CHHHHHHHHHHHHHHHhCCcHHHHHHHhcCCCC
Confidence 98 999999999999999999999999998433
No 57
>3h7m_A Sensor protein; histidine kinase sensor domain, kinase, phosphoprotein, transferase; 2.40A {Geobacter sulfurreducens} SCOP: c.94.1.0
Probab=99.86 E-value=2.7e-21 Score=201.24 Aligned_cols=219 Identities=19% Similarity=0.312 Sum_probs=194.1
Q ss_pred CCcceEEEecCcccccccEEeeCCcceEEEeeHHHHHHHHHhCCCcccEEEeeCCCCCCCCChHHHHHHHHcCceeEEEe
Q 002211 483 NGRQLRIGVPNRVSYRDFVFKVNGTDIVHGYCIDVFLAAVRLLPYAVPYKFIPYGDGHKNPTYSELINQITTGVFDAAVG 562 (953)
Q Consensus 483 ~g~~lri~v~~~~~~~p~~~~~~~~~~~~G~~~dll~~la~~l~~~~~~~~~~~~~~~~n~~~~~~i~~l~~g~~Di~~~ 562 (953)
..++|+|++.. .|+||.+.+. ++.+.|+++|+++.+++++|++++++.. +|.+++..+.+|++|++ .
T Consensus 9 ~~~~l~v~~~~--~~~P~~~~~~-~g~~~G~~~dl~~~i~~~~g~~~~~~~~---------~~~~~~~~l~~g~~D~~-~ 75 (234)
T 3h7m_A 9 RHRTIVVGGDR--DYPPYEFIDQ-NGKPAGYNVELTRAIAEVMGMTVEFRLG---------AWSEMFSALKSGRVDVL-Q 75 (234)
T ss_dssp SSSCEEEEEET--EETTTEEECT-TSCEESHHHHHHHHHHHHHTCCEEEEEE---------CGGGHHHHHHTTSSSEE-E
T ss_pred CCCEEEEEecC--CCCCeEEECC-CCCEeeeEHHHHHHHHHHcCCceEEEeC---------CHHHHHHHHhCCCeeEE-E
Confidence 45789999965 7999999875 7889999999999999999988777654 49999999999999996 5
Q ss_pred cEEEecCccceeeccccceecceEEEEecccCCcCcceeeccCchhHHHHHHHHHHHHHHHhhhhhcccCCCCCCCCccc
Q 002211 563 DIAIVTNRTKAVDFTQPYIESGLVVVAPVRKLNSSAWAFLRPFTPLMWAVTGVFFLVVGTVVWILEHRLNDEFRGPPRKQ 642 (953)
Q Consensus 563 ~~~~t~~r~~~vdft~p~~~~~~~~~v~~~~~~~~~~~~l~PF~~~vW~~i~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ 642 (953)
++..+++|.+.+.||.||.....++++++..
T Consensus 76 ~~~~~~~r~~~~~~s~p~~~~~~~~~~~~~~------------------------------------------------- 106 (234)
T 3h7m_A 76 GISWSEKRARQIDFTPPHTIVYHAIFARRDS------------------------------------------------- 106 (234)
T ss_dssp EEECCHHHHTTEEEEEEEEEEEEEEEEESSS-------------------------------------------------
T ss_pred eccCCHhHHhhcCCCccccccceEEEEECCC-------------------------------------------------
Confidence 6899999999999999999999999998877
Q ss_pred chhhHHHHHHHhhccccCCcccchhHHHHHHHHHHHHHhhhhcccceeeeeeeccccCCCCChHHhhhCCCeEEEEeCch
Q 002211 643 IVTVLWFSFSTMFFAHRENTVSTLGRVVLIIWLFVVLIITSSYTASLTSILTVQQLSSPIKGIDTLMTSNDRVGYQVGSF 722 (953)
Q Consensus 643 ~~~~~~~~~~~l~~~~~~~~~s~~~R~l~~~w~~~~lil~~~Yta~L~s~Lt~~~~~~~I~sl~dL~~~~~~ig~~~~s~ 722 (953)
+.|++++||. |++||+..|+.
T Consensus 107 ---------------------------------------------------------~~~~~~~dL~--g~~i~~~~g~~ 127 (234)
T 3h7m_A 107 ---------------------------------------------------------PPAAGLEDLR--GRKVALHRDGI 127 (234)
T ss_dssp ---------------------------------------------------------CCCSSGGGGT--TSCEEEETTSH
T ss_pred ---------------------------------------------------------CCCCCHHHhC--CCEEEEEeCch
Confidence 4689999996 88999999999
Q ss_pred HHHHHHHhhCCCccceEeCCCHHHHHHHHHcCCcEEEEccchhHHHHHhcC--cceEEeCCccccCccEEEecCCCc-ch
Q 002211 723 AENYLIEELSIPKSRLVALGSPEEYAIALENRTVAAVVDERPYIDLFLSDH--CQFSVRGQEFTKSGWGFAFPRDSP-LA 799 (953)
Q Consensus 723 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~g~~~a~~~~~~~~~~~~~~~--~~l~~~~~~~~~~~~~~~~~k~sp-l~ 799 (953)
...++.+.. +..+++.+++.++++++|.+|++|+++.+...+.+++.+. .++.++...+...+++++++|++| ++
T Consensus 128 ~~~~l~~~~--~~~~~~~~~~~~~~~~~l~~g~vDa~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 205 (234)
T 3h7m_A 128 MHEYLAERG--YGKDLVLTPTPADALRLLAAGGCDYAVVAMVPGMYIIRENRLTNLVPVARSIAAQRYGYAVRQGDAELL 205 (234)
T ss_dssp HHHHHHTTT--CGGGEEEESSHHHHHHHHHTTSSSEEEEEHHHHHHHHHHTTCTTEEEEEEEEEEEEEEEEEETTCHHHH
T ss_pred HHHHHHhcC--CCceEEEeCCHHHHHHHHHcCCceEEEeccHHHHHHHHhcCCCceEEeccccCCCceEEEEeCCCHHHH
Confidence 888885432 3467888999999999999999999999999999888764 368888777778889999999998 99
Q ss_pred HHHHHHHHhhhccccHHHHHHHhcc
Q 002211 800 IDMSTAILTLSENGELQRIHDKWLR 824 (953)
Q Consensus 800 ~~~n~~i~~l~e~G~~~~~~~~w~~ 824 (953)
+.||++|.++.++|.++++.++|+.
T Consensus 206 ~~l~~~l~~l~~~g~~~~i~~k~~~ 230 (234)
T 3h7m_A 206 ARFSEGLAILRKTGQYEAIRAKWLG 230 (234)
T ss_dssp HHHHHHHHHHHHHTHHHHHHHHSTT
T ss_pred HHHHHHHHHHHHcCcHHHHHHHhcc
Confidence 9999999999999999999999997
No 58
>3mpk_A Virulence sensor protein BVGS; venus flytrap, sensor domain, signaling protein; 2.04A {Bordetella pertussis} PDB: 3mpl_A
Probab=99.86 E-value=3e-21 Score=205.64 Aligned_cols=219 Identities=19% Similarity=0.266 Sum_probs=192.0
Q ss_pred CCcceEEEecCcccccccEEeeCCcceEEEeeHHHHHHHHHhCCCcccEEEeeCCCCCCCCChHHHHHHHHcCceeEEEe
Q 002211 483 NGRQLRIGVPNRVSYRDFVFKVNGTDIVHGYCIDVFLAAVRLLPYAVPYKFIPYGDGHKNPTYSELINQITTGVFDAAVG 562 (953)
Q Consensus 483 ~g~~lri~v~~~~~~~p~~~~~~~~~~~~G~~~dll~~la~~l~~~~~~~~~~~~~~~~n~~~~~~i~~l~~g~~Di~~~ 562 (953)
+.++|||++.. +|+||.+.+. ++++.|+++|+++++++++|+++++... .+|.+++.++.+|++|++.
T Consensus 30 ~~~~l~v~~~~--~~~P~~~~~~-~g~~~G~~~dl~~~i~~~lg~~~~~~~~--------~~~~~~~~~l~~G~~D~~~- 97 (267)
T 3mpk_A 30 DHPVVKVAVLN--LFAPFTLFRT-DEQFGGISAAVLQLLQLRTGLDFEIIGV--------DTVEELIAKLRSGEADMAG- 97 (267)
T ss_dssp HCSEEEEEEET--EETTTEECCT-TCCCBSHHHHHHHHHHHHHCCEEEEEEE--------SSHHHHHHHHHHTSCSEEE-
T ss_pred hCCcEEEEeCC--CCCCeEEECC-CCcEeeeHHHHHHHHHHHHCCeEEEEec--------CCHHHHHHHHHCCCccEEe-
Confidence 45789999975 7999999875 6889999999999999999977666543 4699999999999999976
Q ss_pred cEEEecCccceeeccccceecceEEEEecccCCcCcceeeccCchhHHHHHHHHHHHHHHHhhhhhcccCCCCCCCCccc
Q 002211 563 DIAIVTNRTKAVDFTQPYIESGLVVVAPVRKLNSSAWAFLRPFTPLMWAVTGVFFLVVGTVVWILEHRLNDEFRGPPRKQ 642 (953)
Q Consensus 563 ~~~~t~~r~~~vdft~p~~~~~~~~~v~~~~~~~~~~~~l~PF~~~vW~~i~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ 642 (953)
++..+++|.+.+.||.||...+.++++++..
T Consensus 98 ~~~~t~~r~~~~~fs~p~~~~~~~l~~~~~~------------------------------------------------- 128 (267)
T 3mpk_A 98 ALFVNSARESFLSFSRPYVRNGMVIVTRQDP------------------------------------------------- 128 (267)
T ss_dssp EEECCGGGTTTEEECSCSEEECEEEEEESST-------------------------------------------------
T ss_pred cccCChhhhcceEechhhccCceEEEEECCC-------------------------------------------------
Confidence 6999999999999999999999999999876
Q ss_pred chhhHHHHHHHhhccccCCcccchhHHHHHHHHHHHHHhhhhcccceeeeeeeccccCCCCChHHhhhCCCeEEEEeCch
Q 002211 643 IVTVLWFSFSTMFFAHRENTVSTLGRVVLIIWLFVVLIITSSYTASLTSILTVQQLSSPIKGIDTLMTSNDRVGYQVGSF 722 (953)
Q Consensus 643 ~~~~~~~~~~~l~~~~~~~~~s~~~R~l~~~w~~~~lil~~~Yta~L~s~Lt~~~~~~~I~sl~dL~~~~~~ig~~~~s~ 722 (953)
+.|++++||. |++||+..|+.
T Consensus 129 ---------------------------------------------------------~~i~~~~dL~--g~~i~v~~g~~ 149 (267)
T 3mpk_A 129 ---------------------------------------------------------DAPVDADHLD--GRTVALVRNSA 149 (267)
T ss_dssp ---------------------------------------------------------TSCSSGGGCT--TCEEEEETTCT
T ss_pred ---------------------------------------------------------CCCCCHHHHC--CCEEEEeCCch
Confidence 5689999996 89999999999
Q ss_pred HHHHHHHhhCCCccceEeCCCHHHHHHHHHcCCcEEEEccchhHHHHHhc--CcceEEeCCcc-ccCccEEEecCCCc-c
Q 002211 723 AENYLIEELSIPKSRLVALGSPEEYAIALENRTVAAVVDERPYIDLFLSD--HCQFSVRGQEF-TKSGWGFAFPRDSP-L 798 (953)
Q Consensus 723 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~g~~~a~~~~~~~~~~~~~~--~~~l~~~~~~~-~~~~~~~~~~k~sp-l 798 (953)
...++.+.. +..+++.+++.++++++|.+|++|+++.+...+.|++++ ..++.+.+... ...+++++++|++| +
T Consensus 150 ~~~~l~~~~--~~~~~~~~~~~~~~l~~L~~GrvDa~i~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~k~~~~l 227 (267)
T 3mpk_A 150 AIPLLQRRY--PQAKVVTADNPSEAMLMVANGQADAVVQTQISASYYVNRYFAGKLRIASALDLPPAEIALATTRGQTEL 227 (267)
T ss_dssp HHHHHHHHC--TTSEEEEESSHHHHHHHHHHTSCSEEEEEHHHHHHHHHHHCTTTEEEEEECSSCCEEEEEEEETTCHHH
T ss_pred hHHHHHHhC--CCcEEEEeCCHHHHHHHHHcCCCCEEEecHHHHHHHHHhcCCCceEEEeccCCCceeEEEEEcCCCHHH
Confidence 999986543 456788899999999999999999999999999998887 44677776533 36689999999999 9
Q ss_pred hHHHHHHHHhhhccccHHHHHHHhcc
Q 002211 799 AIDMSTAILTLSENGELQRIHDKWLR 824 (953)
Q Consensus 799 ~~~~n~~i~~l~e~G~~~~~~~~w~~ 824 (953)
.+.||++|.++.++| ++++.+||+.
T Consensus 228 ~~~ln~~l~~l~~~~-~~~i~~kw~~ 252 (267)
T 3mpk_A 228 MSILNKALYSISNDE-LASIISRWRG 252 (267)
T ss_dssp HHHHHHHHHTSCHHH-HHHHHHTTC-
T ss_pred HHHHHHHHHhCCHHH-HHHHHHhhcc
Confidence 999999999999997 9999999998
No 59
>1lst_A Lysine, arginine, ornithine-binding protein; amino-acid binding protein; HET: LYS; 1.80A {Salmonella typhimurium} SCOP: c.94.1.1 PDB: 2lao_A 1lag_E* 1lah_E 1laf_E 1hsl_A* 1hpb_P*
Probab=99.86 E-value=3.8e-21 Score=200.94 Aligned_cols=221 Identities=18% Similarity=0.305 Sum_probs=187.3
Q ss_pred CcceEEEecCcccccccEEeeCCcceEEEeeHHHHHHHHHhCCCcccEEEeeCCCCCCCCChHHHHHHHHcCceeEEEec
Q 002211 484 GRQLRIGVPNRVSYRDFVFKVNGTDIVHGYCIDVFLAAVRLLPYAVPYKFIPYGDGHKNPTYSELINQITTGVFDAAVGD 563 (953)
Q Consensus 484 g~~lri~v~~~~~~~p~~~~~~~~~~~~G~~~dll~~la~~l~~~~~~~~~~~~~~~~n~~~~~~i~~l~~g~~Di~~~~ 563 (953)
.++|+|++.. +|+||.+.+. ++++.|+++|+++++++++|++++++. .+|.+++..|.+|++|+++++
T Consensus 3 ~~~l~v~~~~--~~~P~~~~~~-~g~~~G~~~dl~~~i~~~~g~~~~~~~---------~~~~~~~~~l~~g~~D~~~~~ 70 (239)
T 1lst_A 3 PQTVRIGTDT--TYAPFSSKDA-KGEFIGFDIDLGNEMCKRMQVKCTWVA---------SDFDALIPSLKAKKIDAIISS 70 (239)
T ss_dssp CSEEEEEECS--CBTTTBEECT-TCCEESHHHHHHHHHHHHHTCEEEEEE---------CCGGGHHHHHHTTSCSEECSS
T ss_pred cceEEEEECC--CcCCeeEECC-CCCEeeEHHHHHHHHHHHHCCeEEEEe---------CCHHHHHHHHhCCCCCEEEEC
Confidence 4679999954 7999999875 688999999999999999997755554 349999999999999999988
Q ss_pred EEEecCccceeeccccceecceEEEEecccCCcCcceeeccCchhHHHHHHHHHHHHHHHhhhhhcccCCCCCCCCcccc
Q 002211 564 IAIVTNRTKAVDFTQPYIESGLVVVAPVRKLNSSAWAFLRPFTPLMWAVTGVFFLVVGTVVWILEHRLNDEFRGPPRKQI 643 (953)
Q Consensus 564 ~~~t~~r~~~vdft~p~~~~~~~~~v~~~~~~~~~~~~l~PF~~~vW~~i~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~ 643 (953)
+..+++|.+.++||.||.....++++++..
T Consensus 71 ~~~t~~r~~~~~~s~p~~~~~~~l~~~~~~-------------------------------------------------- 100 (239)
T 1lst_A 71 LSITDKRQQEIAFSDKLYAADSRLIAAKGS-------------------------------------------------- 100 (239)
T ss_dssp CBCCHHHHHHCEECSCSBCCCEEEEEETTC--------------------------------------------------
T ss_pred cCcCHHHhhceeecccceeCceEEEEeCCC--------------------------------------------------
Confidence 999999999999999999999999998776
Q ss_pred hhhHHHHHHHhhccccCCcccchhHHHHHHHHHHHHHhhhhcccceeeeeeeccccCCCCChHHhhhCCCeEEEEeCchH
Q 002211 644 VTVLWFSFSTMFFAHRENTVSTLGRVVLIIWLFVVLIITSSYTASLTSILTVQQLSSPIKGIDTLMTSNDRVGYQVGSFA 723 (953)
Q Consensus 644 ~~~~~~~~~~l~~~~~~~~~s~~~R~l~~~w~~~~lil~~~Yta~L~s~Lt~~~~~~~I~sl~dL~~~~~~ig~~~~s~~ 723 (953)
+...+++||. |++||+..|+..
T Consensus 101 --------------------------------------------------------~~~~~~~dL~--g~~v~~~~g~~~ 122 (239)
T 1lst_A 101 --------------------------------------------------------PIQPTLESLK--GKHVGVLQGSTQ 122 (239)
T ss_dssp --------------------------------------------------------CCCSSHHHHT--TCEEEEETTSHH
T ss_pred --------------------------------------------------------CCCCCHHHhC--CCEEEEEcCccH
Confidence 2225899996 899999999998
Q ss_pred HHHHHHhhCCCccceEeCCCHHHHHHHHHcCCcEEEEccchhHHH-HHhcC--cceEEeCCcccc-----CccEEEecCC
Q 002211 724 ENYLIEELSIPKSRLVALGSPEEYAIALENRTVAAVVDERPYIDL-FLSDH--CQFSVRGQEFTK-----SGWGFAFPRD 795 (953)
Q Consensus 724 ~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~g~~~a~~~~~~~~~~-~~~~~--~~l~~~~~~~~~-----~~~~~~~~k~ 795 (953)
..++.+....+..++..+++.++++++|.+|++|+++.+...+.+ ++.+. .++.+++..+.. .+++++++|+
T Consensus 123 ~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~G~vDa~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~k~ 202 (239)
T 1lst_A 123 EAYANDNWRTKGVDVVAYANQDLIYSDLTAGRLDAALQDEVAASEGFLKQPAGKEYAFAGPSVKDKKYFGDGTGVGLRKD 202 (239)
T ss_dssp HHHHHHHTGGGTCEEEEESSHHHHHHHHHTTSCSEEEEEHHHHHHHTTTSGGGTTEEECSSCBCCHHHHCSSBCCEECTT
T ss_pred HHHHHHhcccCCCeEEEcCCHHHHHHHHHcCCCCEEEeCcHHHHHHHHhccCCCceEEeccccccccccCcceEEEEeCC
Confidence 888866542233567889999999999999999999999888754 44442 358777765433 3689999999
Q ss_pred Cc-chHHHHHHHHhhhccccHHHHHHHhcc
Q 002211 796 SP-LAIDMSTAILTLSENGELQRIHDKWLR 824 (953)
Q Consensus 796 sp-l~~~~n~~i~~l~e~G~~~~~~~~w~~ 824 (953)
+| +.+.||++|.++.++|.++++.+||+.
T Consensus 203 ~~~l~~~~~~~l~~l~~~G~~~~i~~k~~~ 232 (239)
T 1lst_A 203 DTELKAAFDKALTELRQDGTYDKMAKKYFD 232 (239)
T ss_dssp CHHHHHHHHHHHHHHHHTTHHHHHHHTTCS
T ss_pred CHHHHHHHHHHHHHHHHCccHHHHHHHHcC
Confidence 98 999999999999999999999999997
No 60
>1wdn_A GLNBP, glutamine binding protein; closed form, complex, peptide, complex (binding protein/peptide); 1.94A {Escherichia coli} SCOP: c.94.1.1 PDB: 1ggg_A
Probab=99.86 E-value=6.8e-21 Score=196.93 Aligned_cols=217 Identities=26% Similarity=0.454 Sum_probs=191.0
Q ss_pred cceEEEecCcccccccEEeeCCcceEEEeeHHHHHHHHHhCCCcccEEEeeCCCCCCCCChHHHHHHHHcCceeEEEecE
Q 002211 485 RQLRIGVPNRVSYRDFVFKVNGTDIVHGYCIDVFLAAVRLLPYAVPYKFIPYGDGHKNPTYSELINQITTGVFDAAVGDI 564 (953)
Q Consensus 485 ~~lri~v~~~~~~~p~~~~~~~~~~~~G~~~dll~~la~~l~~~~~~~~~~~~~~~~n~~~~~~i~~l~~g~~Di~~~~~ 564 (953)
++|+|++.. +|+||.+.++ +++.|+++|+++.+++++|++++++.. .|.+++..+.+|++|++++++
T Consensus 3 ~~l~v~~~~--~~~P~~~~~~--g~~~G~~~dl~~~~~~~~g~~~~~~~~---------~~~~~~~~l~~g~~D~~~~~~ 69 (226)
T 1wdn_A 3 KKLVVATDT--AFVPFEFKQG--DLYVGFDVDLWAAIAKELKLDYELKPM---------DFSGIIPALQTKNVDLALAGI 69 (226)
T ss_dssp -CEEEEEES--SBTTTBEEET--TEEESHHHHHHHHHHHHHTCCEEEEEE---------CGGGHHHHHHTTSSSEEEEEE
T ss_pred ceEEEEECC--CCCCeeEecC--CcEEEeeHHHHHHHHHHhCCEEEEEEC---------CHHHHHHHHhCCCCCEEEEcC
Confidence 579999985 7999998873 789999999999999999977666654 399999999999999998888
Q ss_pred EEecCccceeeccccceecceEEEEecccCCcCcceeeccCchhHHHHHHHHHHHHHHHhhhhhcccCCCCCCCCcccch
Q 002211 565 AIVTNRTKAVDFTQPYIESGLVVVAPVRKLNSSAWAFLRPFTPLMWAVTGVFFLVVGTVVWILEHRLNDEFRGPPRKQIV 644 (953)
Q Consensus 565 ~~t~~r~~~vdft~p~~~~~~~~~v~~~~~~~~~~~~l~PF~~~vW~~i~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~ 644 (953)
..+++|.+.++|+.||.....++++++..
T Consensus 70 ~~~~~r~~~~~~~~p~~~~~~~~~~~~~~--------------------------------------------------- 98 (226)
T 1wdn_A 70 TITDERKKAIDFSDGYYKSGLLVMVKANN--------------------------------------------------- 98 (226)
T ss_dssp ECCHHHHTTSEECSCCEEEEEEEEEETTC---------------------------------------------------
T ss_pred cCCHHHhCccccccchhcCceEEEEeCCC---------------------------------------------------
Confidence 88999999999999999999999998776
Q ss_pred hhHHHHHHHhhccccCCcccchhHHHHHHHHHHHHHhhhhcccceeeeeeeccccCCCCChHHhhhCCCeEEEEeCchHH
Q 002211 645 TVLWFSFSTMFFAHRENTVSTLGRVVLIIWLFVVLIITSSYTASLTSILTVQQLSSPIKGIDTLMTSNDRVGYQVGSFAE 724 (953)
Q Consensus 645 ~~~~~~~~~l~~~~~~~~~s~~~R~l~~~w~~~~lil~~~Yta~L~s~Lt~~~~~~~I~sl~dL~~~~~~ig~~~~s~~~ 724 (953)
+.|++++||. |++||+..|+...
T Consensus 99 -------------------------------------------------------~~i~~~~dL~--g~~i~~~~g~~~~ 121 (226)
T 1wdn_A 99 -------------------------------------------------------NDVKSVKDLD--GKVVAVKSGTGSV 121 (226)
T ss_dssp -------------------------------------------------------CSCSSSTTTT--TCEEEEETTSHHH
T ss_pred -------------------------------------------------------CCCCCHHHhC--CCEEEEEcCCcHH
Confidence 4688999996 8999999999988
Q ss_pred HHHHHhhCCCccceEeCCCHHHHHHHHHcCCcEEEEccchhHHHHHhcC--cceEEeCCccccCccEEEecCCCc-chHH
Q 002211 725 NYLIEELSIPKSRLVALGSPEEYAIALENRTVAAVVDERPYIDLFLSDH--CQFSVRGQEFTKSGWGFAFPRDSP-LAID 801 (953)
Q Consensus 725 ~~l~~~~~~~~~~~~~~~~~~~~~~~l~~g~~~a~~~~~~~~~~~~~~~--~~l~~~~~~~~~~~~~~~~~k~sp-l~~~ 801 (953)
.++.+.. +..+++.+.+.++++++|.+|++|+++.+...+.+++.+. .++.+++..+...+++++++|++| +.+.
T Consensus 122 ~~l~~~~--~~~~~~~~~~~~~~~~~l~~g~vDa~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~k~~~~l~~~ 199 (226)
T 1wdn_A 122 DYAKANI--KTKDLRQFPNIDNAYMELGTNRADAVLHDTPNILYFIKTAGNGQFKAVGDSLEAQQYGIAFPKGSDELRDK 199 (226)
T ss_dssp HHHHHHC--CCSEEEEESSHHHHHHHHHTTSCSEEEEEHHHHHHHHHTTTTTTEEEEEEEEEEEEEEEEECTTCHHHHHH
T ss_pred HHHHHhC--CCceEEEeCCHHHHHHHHHcCCcCEEEeCcHHHHHHHHhCCCCceEEecCCcccCceEEEEeCCCHHHHHH
Confidence 8886543 3456788899999999999999999999999999988775 368887766667789999999986 9999
Q ss_pred HHHHHHhhhccccHHHHHHHhcc
Q 002211 802 MSTAILTLSENGELQRIHDKWLR 824 (953)
Q Consensus 802 ~n~~i~~l~e~G~~~~~~~~w~~ 824 (953)
+|++|.++.++|.++++.+||+.
T Consensus 200 ~~~~l~~l~~~g~~~~i~~k~~~ 222 (226)
T 1wdn_A 200 VNGALKTLRENGTYNEIYKKWFG 222 (226)
T ss_dssp HHHHHHHHHHTSHHHHHHHHHHS
T ss_pred HHHHHHHHHhCChHHHHHHHHcC
Confidence 99999999999999999999987
No 61
>4dz1_A DALS D-alanine transporter; D-alanine binding, periplasmic, transport protein; 1.90A {Salmonella enterica} PDB: 3r39_A 4f3s_A
Probab=99.85 E-value=8.3e-21 Score=201.18 Aligned_cols=222 Identities=19% Similarity=0.311 Sum_probs=191.6
Q ss_pred CCcceEEEecCcccccccEEeeCCcceEEEeeHHHHHHHHHhCCCcccEEEeeCCCCCCCCChHHHHHHHHcCceeEEEe
Q 002211 483 NGRQLRIGVPNRVSYRDFVFKVNGTDIVHGYCIDVFLAAVRLLPYAVPYKFIPYGDGHKNPTYSELINQITTGVFDAAVG 562 (953)
Q Consensus 483 ~g~~lri~v~~~~~~~p~~~~~~~~~~~~G~~~dll~~la~~l~~~~~~~~~~~~~~~~n~~~~~~i~~l~~g~~Di~~~ 562 (953)
..++|+|++.. .|+||.+.+. ++++.|+++|+++.+++++|++++++. .+|.+++..+.+|++|++++
T Consensus 27 ~~~~l~v~~~~--~~~P~~~~~~-~g~~~G~~~dl~~~i~~~~g~~~~~~~---------~~~~~~~~~l~~g~~D~~~~ 94 (259)
T 4dz1_A 27 EGRTLNVAVSP--ASPPMLFKSA-DGKLQGIDLELFSSYCQSRHCKLNITE---------YAWDGMLGAVASGQADVAFS 94 (259)
T ss_dssp TTCEEEEEECC--CBTTTBEECT-TCCEESHHHHHHHHHHHHHTCEEEEEE---------CCHHHHHHHHHHTSSSEEEE
T ss_pred cCCeEEEEECC--CCCCeEEECC-CCCEEEeHHHHHHHHHHHhCCeEEEEE---------cCHHHHHHHHhCCCCCEEEE
Confidence 45789999975 7899999874 789999999999999999997755544 34999999999999999988
Q ss_pred cEEEecCccceeeccccceecceEEEEecccCCcCcceeeccCchhHHHHHHHHHHHHHHHhhhhhcccCCCCCCCCccc
Q 002211 563 DIAIVTNRTKAVDFTQPYIESGLVVVAPVRKLNSSAWAFLRPFTPLMWAVTGVFFLVVGTVVWILEHRLNDEFRGPPRKQ 642 (953)
Q Consensus 563 ~~~~t~~r~~~vdft~p~~~~~~~~~v~~~~~~~~~~~~l~PF~~~vW~~i~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ 642 (953)
+++.+++|.+.++||.||...+..++++++..
T Consensus 95 ~~~~t~~r~~~~~fs~p~~~~~~~~~~~~~~~------------------------------------------------ 126 (259)
T 4dz1_A 95 GISITDKRKKVIDFSEPYYINSFYLVSMANHK------------------------------------------------ 126 (259)
T ss_dssp EEECCHHHHTTEEECCCSEEEEEEEEEETTSC------------------------------------------------
T ss_pred CCcCCHHHhhccccccchhhCceEEEEEcCCC------------------------------------------------
Confidence 89999999999999999999999999987761
Q ss_pred chhhHHHHHHHhhccccCCcccchhHHHHHHHHHHHHHhhhhcccceeeeeeeccccCCCCChHHhhhCCCeEEEEeCch
Q 002211 643 IVTVLWFSFSTMFFAHRENTVSTLGRVVLIIWLFVVLIITSSYTASLTSILTVQQLSSPIKGIDTLMTSNDRVGYQVGSF 722 (953)
Q Consensus 643 ~~~~~~~~~~~l~~~~~~~~~s~~~R~l~~~w~~~~lil~~~Yta~L~s~Lt~~~~~~~I~sl~dL~~~~~~ig~~~~s~ 722 (953)
..|++++||. |++||+..|+.
T Consensus 127 ---------------------------------------------------------~~i~~~~dL~--g~~v~v~~g~~ 147 (259)
T 4dz1_A 127 ---------------------------------------------------------ITLNNLNELN--KYSIGYPRGMA 147 (259)
T ss_dssp ---------------------------------------------------------CCCCSGGGGG--GSCEEEETTST
T ss_pred ---------------------------------------------------------CCCCCHHHhC--CCEEEEeCCcH
Confidence 4789999997 88999999999
Q ss_pred HHHHHHHhhCC---Cc-cceEeCCCHHHHHHHHHcCCcEEEEccchhHHHHHhc-CcceEEeCCccccCccEEEecCCCc
Q 002211 723 AENYLIEELSI---PK-SRLVALGSPEEYAIALENRTVAAVVDERPYIDLFLSD-HCQFSVRGQEFTKSGWGFAFPRDSP 797 (953)
Q Consensus 723 ~~~~l~~~~~~---~~-~~~~~~~~~~~~~~~l~~g~~~a~~~~~~~~~~~~~~-~~~l~~~~~~~~~~~~~~~~~k~sp 797 (953)
...++.+.... +. .+++.+++.++++++|.+|++|+++.+...+.+++++ ..++..........+++++++|+++
T Consensus 148 ~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~~~l~~G~vDa~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~ 227 (259)
T 4dz1_A 148 YSDLIKNDLEPKGYYSLSKVKLYPTYNETMADLKNGNLDLAFIEEPVYFTFKNKKKMPIESRYVFKNVDQLGIAFKKGSP 227 (259)
T ss_dssp HHHHHHHHTGGGTSCCGGGCEEESSHHHHHHHHHHTSCSEEEEEHHHHHHHHHTSCCCEEEEEEEEEEEEEEEEEETTCH
T ss_pred HHHHHHHhcccccccccceeEecCCHHHHHHHHHcCCCCEEEecHHHHHHHhccCCCceEeecccCCCceEEEEEeCChH
Confidence 88888654321 11 5778899999999999999999999999988777665 4466666655567789999999999
Q ss_pred chHHHHHHHHhhhccccHHHHHHHhcc
Q 002211 798 LAIDMSTAILTLSENGELQRIHDKWLR 824 (953)
Q Consensus 798 l~~~~n~~i~~l~e~G~~~~~~~~w~~ 824 (953)
+++.||++|.+ ..++.++++.++|..
T Consensus 228 l~~~ln~~l~~-~g~~~l~~~~~~~~~ 253 (259)
T 4dz1_A 228 VRDDFNLWLKE-QGPQKISGIVDSWMK 253 (259)
T ss_dssp HHHHHHHHHHH-HCHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHh-CCCeehHHHHHHHHh
Confidence 99999999999 888999999999987
No 62
>2y7i_A STM4351; arginine-binding protein; HET: ARG; 1.90A {Salmonella enterica subsp}
Probab=99.85 E-value=1.4e-20 Score=195.23 Aligned_cols=218 Identities=22% Similarity=0.393 Sum_probs=188.9
Q ss_pred CCcceEEEecCcccccccEEeeCCcceEEEeeHHHHHHHHHhCCCcccEEEeeCCCCCCCCChHHHHHHHHcCceeEEEe
Q 002211 483 NGRQLRIGVPNRVSYRDFVFKVNGTDIVHGYCIDVFLAAVRLLPYAVPYKFIPYGDGHKNPTYSELINQITTGVFDAAVG 562 (953)
Q Consensus 483 ~g~~lri~v~~~~~~~p~~~~~~~~~~~~G~~~dll~~la~~l~~~~~~~~~~~~~~~~n~~~~~~i~~l~~g~~Di~~~ 562 (953)
..++|+|++.. +|+||.+.+. ++++.|+++|+++.+++++|+++++... +|.+++..+.+|++|++++
T Consensus 4 ~a~~l~v~~~~--~~~P~~~~~~-~g~~~G~~~dl~~~i~~~~g~~~~~~~~---------~~~~~~~~l~~g~~D~~~~ 71 (229)
T 2y7i_A 4 SARTLHFGTSA--TYAPYEFVDA-DNKIVGFDIDVANAVCKEMQAECSFTNQ---------SFDSLIPSLRFKKFDAVIA 71 (229)
T ss_dssp SCCEEEEEECC--CBTTTBEECT-TSCEESHHHHHHHHHHHHTTCEEEEEEC---------CGGGHHHHHHTTSCSEECS
T ss_pred cCCcEEEEeCC--CcCCceEECC-CCCCcceeHHHHHHHHHHhCCeEEEEEc---------CHHHHHHHHhCCCceEEEe
Confidence 45789999964 7999998875 6889999999999999999977655543 4999999999999999987
Q ss_pred cEEEecCccceeeccccceec-ceEEEEecccCCcCcceeeccCchhHHHHHHHHHHHHHHHhhhhhcccCCCCCCCCcc
Q 002211 563 DIAIVTNRTKAVDFTQPYIES-GLVVVAPVRKLNSSAWAFLRPFTPLMWAVTGVFFLVVGTVVWILEHRLNDEFRGPPRK 641 (953)
Q Consensus 563 ~~~~t~~r~~~vdft~p~~~~-~~~~~v~~~~~~~~~~~~l~PF~~~vW~~i~~~~~~~~~~~~~l~~~~~~~~~~~~~~ 641 (953)
++..+++|.+.+.|+.||... ..++++++..
T Consensus 72 ~~~~~~~r~~~~~~s~p~~~~~~~~~~~~~~~------------------------------------------------ 103 (229)
T 2y7i_A 72 GMDMTPKREQQVSFSQPYYEGLSAVVVTRKGA------------------------------------------------ 103 (229)
T ss_dssp SCBCCHHHHTTSEECSCSBCCCCEEEEEETTS------------------------------------------------
T ss_pred cCccCHHHhcceeeccccccCCcEEEEEeCCC------------------------------------------------
Confidence 788999999999999999999 8888886432
Q ss_pred cchhhHHHHHHHhhccccCCcccchhHHHHHHHHHHHHHhhhhcccceeeeeeeccccCCCCChHHhhhCCCeEEEEeCc
Q 002211 642 QIVTVLWFSFSTMFFAHRENTVSTLGRVVLIIWLFVVLIITSSYTASLTSILTVQQLSSPIKGIDTLMTSNDRVGYQVGS 721 (953)
Q Consensus 642 ~~~~~~~~~~~~l~~~~~~~~~s~~~R~l~~~w~~~~lil~~~Yta~L~s~Lt~~~~~~~I~sl~dL~~~~~~ig~~~~s 721 (953)
+++++||. |++||+..|+
T Consensus 104 ------------------------------------------------------------~~~~~dL~--g~~v~~~~g~ 121 (229)
T 2y7i_A 104 ------------------------------------------------------------YHTFADLK--GKKVGLENGT 121 (229)
T ss_dssp ------------------------------------------------------------CCSTGGGT--TCEEEEETTS
T ss_pred ------------------------------------------------------------CCCHHHHC--CCEEEEecCC
Confidence 57789995 8999999999
Q ss_pred hHHHHHHHhhCCCccceEeCCCHHHHHHHHHcCCcEEEEccchhHHHHHhcCcceEEeCCccc-----cCccEEEecCCC
Q 002211 722 FAENYLIEELSIPKSRLVALGSPEEYAIALENRTVAAVVDERPYIDLFLSDHCQFSVRGQEFT-----KSGWGFAFPRDS 796 (953)
Q Consensus 722 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~g~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~-----~~~~~~~~~k~s 796 (953)
....++.+.. +..+++.+.+.++++++|.+|++|+++.+...+.+++++..++.+++..+. ..+++++++|++
T Consensus 122 ~~~~~l~~~~--~~~~~~~~~~~~~~~~~l~~grvDa~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 199 (229)
T 2y7i_A 122 THQRYLQDKQ--QAITPVAYDSYLNAFTDLKNNRLEGVFGDVAAIGKWLKNNPDYAIMDERASDPDYYGKGLGIAVRKDN 199 (229)
T ss_dssp HHHHHHHHHC--TTSEEEEESCHHHHHHHHHTTSCSEEEEEHHHHHHHHTTCTTEEECSCCBCCTTTSCCCBCCEECTTC
T ss_pred cHHHHHHHhC--CCCeEEecCCHHHHHHHHHcCCcCEEEechHHHHHHHHhCCCeEEeccccccccccccceEEEEeCCC
Confidence 9888886543 345778889999999999999999999999999999888778888876542 237899999999
Q ss_pred c-chHHHHHHHHhhhccccHHHHHHHhcc
Q 002211 797 P-LAIDMSTAILTLSENGELQRIHDKWLR 824 (953)
Q Consensus 797 p-l~~~~n~~i~~l~e~G~~~~~~~~w~~ 824 (953)
| +++.||++|.++.++|.++++.+||+.
T Consensus 200 ~~l~~~l~~~l~~l~~~g~~~~i~~k~~~ 228 (229)
T 2y7i_A 200 DALLQEINAALDKVKASPEYAQMQEKWFT 228 (229)
T ss_dssp HHHHHHHHHHHHHHHTSHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHhCChHHHHHHHHcC
Confidence 8 999999999999999999999999985
No 63
>2iee_A ORF2, probable ABC transporter extracellular-binding protein YCKB; SR574, NESG, X-RAY, structural genomics, PSI-2; 2.20A {Bacillus subtilis}
Probab=99.84 E-value=3.7e-21 Score=205.35 Aligned_cols=219 Identities=16% Similarity=0.274 Sum_probs=186.2
Q ss_pred CCcceEEEecCcccccccEEeeCCc--ceEEEeeHHHHHHHHHhCCCcccEEEeeCCCCCCCCChHHHHHHHHcCceeEE
Q 002211 483 NGRQLRIGVPNRVSYRDFVFKVNGT--DIVHGYCIDVFLAAVRLLPYAVPYKFIPYGDGHKNPTYSELINQITTGVFDAA 560 (953)
Q Consensus 483 ~g~~lri~v~~~~~~~p~~~~~~~~--~~~~G~~~dll~~la~~l~~~~~~~~~~~~~~~~n~~~~~~i~~l~~g~~Di~ 560 (953)
..++|+|++.. +|+||.+.+.++ +.+.|+++|+++++++++|++++++.. .|.+++..+.+|++|++
T Consensus 19 ~~~~l~v~~~~--~~pP~~~~~~~~~~g~~~G~~~dl~~~i~~~~g~~v~~~~~---------~~~~~~~~l~~G~~D~~ 87 (271)
T 2iee_A 19 DKGKIVVATSG--TLYPTSYHDTDSGSDKLTGYEVEVVREAAKRLGLKVEFKEM---------GIDGMLTAVNSGQVDAA 87 (271)
T ss_dssp HHTEEEEEECS--CBTTTBEEETTTTCCEEECHHHHHHHHHHHHTTCEEEEEEC---------CSTTHHHHHHHTSSSEE
T ss_pred cCCeEEEEECC--CCCCeeEeCCCCCCCCceeeHHHHHHHHHHHcCCeEEEEEC---------CHHHHHHHHHCCCcCEE
Confidence 45789999974 799999987522 899999999999999999977665543 49999999999999999
Q ss_pred EecEEEecCccceeeccccceecceEEEEecccCCcCcceeeccCchhHHHHHHHHHHHHHHHhhhhhcccCCCCCCCCc
Q 002211 561 VGDIAIVTNRTKAVDFTQPYIESGLVVVAPVRKLNSSAWAFLRPFTPLMWAVTGVFFLVVGTVVWILEHRLNDEFRGPPR 640 (953)
Q Consensus 561 ~~~~~~t~~r~~~vdft~p~~~~~~~~~v~~~~~~~~~~~~l~PF~~~vW~~i~~~~~~~~~~~~~l~~~~~~~~~~~~~ 640 (953)
++++..+++|.+.++||.||.....++++++...
T Consensus 88 ~~~~~~t~~r~~~~~fs~p~~~~~~~l~~~~~~~---------------------------------------------- 121 (271)
T 2iee_A 88 ANDIDVTKDREEKFAFSTPYKYSYGTAIVRKDDL---------------------------------------------- 121 (271)
T ss_dssp CSSCBCCHHHHTTEEECCCSEEEEEEEEECTTTG----------------------------------------------
T ss_pred EeCCcCChhhccceEEeecceeCCeEEEEECCCC----------------------------------------------
Confidence 9888899999999999999999999999987661
Q ss_pred ccchhhHHHHHHHhhccccCCcccchhHHHHHHHHHHHHHhhhhcccceeeeeeeccccCCCCChHHhhhCCCeEEEEeC
Q 002211 641 KQIVTVLWFSFSTMFFAHRENTVSTLGRVVLIIWLFVVLIITSSYTASLTSILTVQQLSSPIKGIDTLMTSNDRVGYQVG 720 (953)
Q Consensus 641 ~~~~~~~~~~~~~l~~~~~~~~~s~~~R~l~~~w~~~~lil~~~Yta~L~s~Lt~~~~~~~I~sl~dL~~~~~~ig~~~~ 720 (953)
..|++++||. |++||+..|
T Consensus 122 -----------------------------------------------------------~~i~~~~dL~--g~~i~v~~g 140 (271)
T 2iee_A 122 -----------------------------------------------------------SGIKTLKDLK--GKKAAGAAT 140 (271)
T ss_dssp -----------------------------------------------------------GGCSSGGGGT--TCEEESCTT
T ss_pred -----------------------------------------------------------CCCCCHHHhC--CCEEEEeCC
Confidence 2688999996 899999999
Q ss_pred chHHHHHHHhhCCCccceEeCCCHHHH--HHHHHcCCcEEEEccchhHHHHHh-cC--cceEEe-CCccccCccEEEecC
Q 002211 721 SFAENYLIEELSIPKSRLVALGSPEEY--AIALENRTVAAVVDERPYIDLFLS-DH--CQFSVR-GQEFTKSGWGFAFPR 794 (953)
Q Consensus 721 s~~~~~l~~~~~~~~~~~~~~~~~~~~--~~~l~~g~~~a~~~~~~~~~~~~~-~~--~~l~~~-~~~~~~~~~~~~~~k 794 (953)
+....++++ .+. +++.+++.+++ +++|.+|++| ++.+...+.+++. +. .++.++ +..+...+++++++|
T Consensus 141 ~~~~~~l~~-~~~---~~~~~~~~~~~~l~~~L~~GrvD-~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k 215 (271)
T 2iee_A 141 TVYMEVARK-YGA---KEVIYDNATNEQYLKDVANGRTD-VILNDYYLQTLALAAFPDLNITIHPDIKYMPNKQALVMKK 215 (271)
T ss_dssp SHHHHHHHH-TTC---EEEECSSCCHHHHHHHHHHTSSC-EEEEEHHHHHHHHHHCTTSSCEECSSCCEEEEEECCEEET
T ss_pred ccHHHHHHH-cCC---ceEEeCChhhHHHHHHHHcCCcc-EEeccHHHHHHHHHhCCCCceEEecCCCcccceEEEEEcC
Confidence 998888853 432 77888999999 9999999999 6666666555554 43 367887 666677789999999
Q ss_pred CCc-chHHHHHHHHhhhccccHHHHHHHhcc
Q 002211 795 DSP-LAIDMSTAILTLSENGELQRIHDKWLR 824 (953)
Q Consensus 795 ~sp-l~~~~n~~i~~l~e~G~~~~~~~~w~~ 824 (953)
++| +++.||++|.+|.++|.++++.+||+.
T Consensus 216 ~~~~l~~~ln~al~~l~~~G~~~~i~~k~~~ 246 (271)
T 2iee_A 216 SNAALQKKMNEALKEMSKDGSLTKLSKQFFN 246 (271)
T ss_dssp TCHHHHHHHHHHHHHHHHHTHHHHHHHHHTT
T ss_pred CCHHHHHHHHHHHHHHHHCCCHHHHHHHhCC
Confidence 998 999999999999999999999999998
No 64
>2pvu_A ARTJ; basic amino acid binding protein, ABC transport system, THER bacterium, transport protein; HET: LYS; 1.79A {Geobacillus stearothermophilus} PDB: 2q2a_A* 2q2c_A*
Probab=99.83 E-value=5.7e-20 Score=196.25 Aligned_cols=241 Identities=17% Similarity=0.302 Sum_probs=191.4
Q ss_pred cceeeEeCCCcccCCCc---ccccCCCcceEEEecCcccccccEEeeCCcceEEEeeHHHHHHHHHhCCCcccEEEeeCC
Q 002211 461 HLYSVVWPGGVTSKPRG---WVFPNNGRQLRIGVPNRVSYRDFVFKVNGTDIVHGYCIDVFLAAVRLLPYAVPYKFIPYG 537 (953)
Q Consensus 461 ~l~~i~Wpg~~~~~P~~---~~~~~~g~~lri~v~~~~~~~p~~~~~~~~~~~~G~~~dll~~la~~l~~~~~~~~~~~~ 537 (953)
-+..+.|.++....+.. -......++|+|++.. +|+||.+.+ ++.+.|+++|+++.+++++|++++++..
T Consensus 15 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~v~~~~--~~~P~~~~~--~g~~~G~~~dl~~~i~~~~g~~v~~~~~--- 87 (272)
T 2pvu_A 15 VPRGSHMGGGRSTETSSSSGGDGGATKKKVVVGTDA--AFAPFEYMQ--KGKIVGFDVDLLDAVMKAAGLDYELKNI--- 87 (272)
T ss_dssp -----------------------CCCCCCEEEEECC--CBTTTBEEE--TTEEESHHHHHHHHHHHHHTCCEEEEEC---
T ss_pred ccccceecCCCCCccccCccccccccCCeEEEEECC--CCCCeEEec--CCeEEEEHHHHHHHHHHHhCCceEEEEC---
Confidence 34456777765322111 1112345789999975 789998875 5789999999999999999977655543
Q ss_pred CCCCCCChHHHHHHHHcCceeEEEecEEEecCccceeeccccceecceEEEEecccCCcCcceeeccCchhHHHHHHHHH
Q 002211 538 DGHKNPTYSELINQITTGVFDAAVGDIAIVTNRTKAVDFTQPYIESGLVVVAPVRKLNSSAWAFLRPFTPLMWAVTGVFF 617 (953)
Q Consensus 538 ~~~~n~~~~~~i~~l~~g~~Di~~~~~~~t~~r~~~vdft~p~~~~~~~~~v~~~~~~~~~~~~l~PF~~~vW~~i~~~~ 617 (953)
.|.+++..+.+|++|++++++..+++|.+.++|+.||.....++++++..
T Consensus 88 ------~~~~~~~~l~~G~~D~~~~~~~~~~~r~~~~~~s~p~~~~~~~l~~~~~~------------------------ 137 (272)
T 2pvu_A 88 ------GWDPLFASLQSKEVDMGISGITITDERKQSYDFSDPYFEATQVILVKQGS------------------------ 137 (272)
T ss_dssp ------CHHHHHHHHHHTSSSEECSSCBCCHHHHTTEEECSCCEEECEEEEEETTC------------------------
T ss_pred ------CHHHHHHHHhCCCCCEEEeCCcCCHHHHhcCccchhhhccceEEEEECCC------------------------
Confidence 39999999999999999887888999999999999999999999998766
Q ss_pred HHHHHHhhhhhcccCCCCCCCCcccchhhHHHHHHHhhccccCCcccchhHHHHHHHHHHHHHhhhhcccceeeeeeecc
Q 002211 618 LVVGTVVWILEHRLNDEFRGPPRKQIVTVLWFSFSTMFFAHRENTVSTLGRVVLIIWLFVVLIITSSYTASLTSILTVQQ 697 (953)
Q Consensus 618 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~s~~~R~l~~~w~~~~lil~~~Yta~L~s~Lt~~~ 697 (953)
T Consensus 138 -------------------------------------------------------------------------------- 137 (272)
T 2pvu_A 138 -------------------------------------------------------------------------------- 137 (272)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred ccCCCCChHHhhhCCCeEEEEeCchHHHHHHHhhCCCccceEeCCCHHHHHHHHHcCCcEEEEccchhHHHHHhcCc--c
Q 002211 698 LSSPIKGIDTLMTSNDRVGYQVGSFAENYLIEELSIPKSRLVALGSPEEYAIALENRTVAAVVDERPYIDLFLSDHC--Q 775 (953)
Q Consensus 698 ~~~~I~sl~dL~~~~~~ig~~~~s~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~g~~~a~~~~~~~~~~~~~~~~--~ 775 (953)
+|++++||. |++||+..|+....++.+.++ ...+++.+.+.++++++|.+|++|+++.+...+.+++++.. +
T Consensus 138 ---~i~~~~dL~--g~~i~~~~g~~~~~~l~~~~~-~~~~i~~~~~~~~~~~~l~~G~vDa~~~~~~~~~~~~~~~~~~~ 211 (272)
T 2pvu_A 138 ---PVKNALDLK--GKTIGVQNATTGQEAAEKLFG-KGPHIKKFETTVVAIMELLNGGVDAVITDNAVANEYVKNNPNKK 211 (272)
T ss_dssp ---CCCSGGGGT--TSCEEEETTSHHHHHHHHHHC-SSTTEEEESSHHHHHHHHHTTSCSEEEEEHHHHHHHHHHCGGGC
T ss_pred ---CCCCHHHhC--CCeEEEEcCchHHHHHHHhcC-CCCeEEEcCCHHHHHHHHHcCCccEEEeCHHHHHHHHHhCCCCc
Confidence 488999996 889999999998888876555 45677888999999999999999999999999999887754 3
Q ss_pred eEEeCCcc--ccCccEEEecCCCcchHHHHHHHHhhhccccHHHHHHHhcc
Q 002211 776 FSVRGQEF--TKSGWGFAFPRDSPLAIDMSTAILTLSENGELQRIHDKWLR 824 (953)
Q Consensus 776 l~~~~~~~--~~~~~~~~~~k~spl~~~~n~~i~~l~e~G~~~~~~~~w~~ 824 (953)
+.+++... ...+++++++|+..+.+.+|++|.++.++|.++++.+||+.
T Consensus 212 l~~~~~~~~~~~~~~~~~~~k~~~l~~~l~~~l~~l~~~g~~~~i~~k~~~ 262 (272)
T 2pvu_A 212 LQVIEDPKNFASEYYGMIFPKNSELKAKVDEALKNVINSGKYTEIYKKWFG 262 (272)
T ss_dssp EEEECCTTTSCCEEECCEEETTCTTHHHHHHHHHHHHHTTHHHHHHHHHHS
T ss_pred eEEeccccccCCceEEEEEeCCHHHHHHHHHHHHHHHhCChHHHHHHHHcC
Confidence 88887653 55678999999944999999999999999999999999997
No 65
>2q88_A EHUB, putative ABC transporter amino acid-binding prote; substrate-binding protein, compatible solues, ABC-transporte osmoprotection; HET: 4CS; 1.90A {Sinorhizobium meliloti} PDB: 2q89_A*
Probab=99.83 E-value=3e-20 Score=196.58 Aligned_cols=221 Identities=18% Similarity=0.209 Sum_probs=188.0
Q ss_pred CcceEEEecCcccccccEEeeCCcceEEEeeHHHHHHHHHhCCCc-ccEEEeeCCCCCCCCChHHHHHHHHcCceeEEEe
Q 002211 484 GRQLRIGVPNRVSYRDFVFKVNGTDIVHGYCIDVFLAAVRLLPYA-VPYKFIPYGDGHKNPTYSELINQITTGVFDAAVG 562 (953)
Q Consensus 484 g~~lri~v~~~~~~~p~~~~~~~~~~~~G~~~dll~~la~~l~~~-~~~~~~~~~~~~~n~~~~~~i~~l~~g~~Di~~~ 562 (953)
.++|+|++. +|+||.+.+. ++++.|+++|+++++++++|++ +++... .|.+++..+.+|++|++++
T Consensus 12 ~~~l~v~~~---~~~P~~~~~~-~g~~~G~~~dl~~~i~~~~g~~~~~~~~~---------~~~~~~~~l~~g~~D~~~~ 78 (257)
T 2q88_A 12 QGFARIAIA---NEPPFTAVGA-DGKVSGAAPDVAREIFKRLGVADVVASIS---------EYGAMIPGLQAGRHDAITA 78 (257)
T ss_dssp HTEEEEEEC---CCTTTCEECT-TCCEESHHHHHHHHHHHHTTCCEEEEEEC---------CGGGHHHHHHTTSCSEECS
T ss_pred CCeEEEEcC---CCCCeeEECC-CCCcccccHHHHHHHHHHcCCCeeeEEeC---------CHHHHHHHHHCCCcCEEEe
Confidence 467999996 6899998775 6889999999999999999976 655543 4999999999999999987
Q ss_pred cEEEecCccceeeccccceecceEEEEecccCCcCcceeeccCchhHHHHHHHHHHHHHHHhhhhhcccCCCCCCCCccc
Q 002211 563 DIAIVTNRTKAVDFTQPYIESGLVVVAPVRKLNSSAWAFLRPFTPLMWAVTGVFFLVVGTVVWILEHRLNDEFRGPPRKQ 642 (953)
Q Consensus 563 ~~~~t~~r~~~vdft~p~~~~~~~~~v~~~~~~~~~~~~l~PF~~~vW~~i~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ 642 (953)
++..+++|.+.++||.||...+.++++++..+
T Consensus 79 ~~~~t~~r~~~~~~s~p~~~~~~~~~~~~~~~------------------------------------------------ 110 (257)
T 2q88_A 79 GLFMKPERCAAVAYSQPILCDAEAFALKKGNP------------------------------------------------ 110 (257)
T ss_dssp CCBCCHHHHTTSEECSCCCEECEEEEEETTCT------------------------------------------------
T ss_pred cccCCHHHHhccccccchhcCceEEEEECCCc------------------------------------------------
Confidence 79999999999999999999999999987761
Q ss_pred chhhHHHHHHHhhccccCCcccchhHHHHHHHHHHHHHhhhhcccceeeeeeeccccCCCCChHHhhhC-CCeEEEEeCc
Q 002211 643 IVTVLWFSFSTMFFAHRENTVSTLGRVVLIIWLFVVLIITSSYTASLTSILTVQQLSSPIKGIDTLMTS-NDRVGYQVGS 721 (953)
Q Consensus 643 ~~~~~~~~~~~l~~~~~~~~~s~~~R~l~~~w~~~~lil~~~Yta~L~s~Lt~~~~~~~I~sl~dL~~~-~~~ig~~~~s 721 (953)
..|++++||..+ |++||+..|+
T Consensus 111 ---------------------------------------------------------~~i~~~~dL~~~~g~~i~~~~g~ 133 (257)
T 2q88_A 111 ---------------------------------------------------------LGLKSYKDIADNPDAKIGAPGGG 133 (257)
T ss_dssp ---------------------------------------------------------TCCCBHHHHHHCTTCCEEECTTS
T ss_pred ---------------------------------------------------------cCCCCHHHHhccCCceEEEECCc
Confidence 268899999755 7899999999
Q ss_pred hHHHHHHHhhCCCccceEeCCCHHHHHHHHHcCCcEEEEccchhHHHHHhcCc--ceEEeCCccc--cCccEEEecCCCc
Q 002211 722 FAENYLIEELSIPKSRLVALGSPEEYAIALENRTVAAVVDERPYIDLFLSDHC--QFSVRGQEFT--KSGWGFAFPRDSP 797 (953)
Q Consensus 722 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~g~~~a~~~~~~~~~~~~~~~~--~l~~~~~~~~--~~~~~~~~~k~sp 797 (953)
....++. ..+.+..+++.+++.++++++|.+|++|+++.+...+.+++.+.. .+..+.+... ..+++++++|+++
T Consensus 134 ~~~~~l~-~~~~~~~~~~~~~~~~~~~~~l~~grvDa~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~ 212 (257)
T 2q88_A 134 TEEKLAL-EAGVPRDRVIVVPDGQSGLKMLQDGRIDVYSLPVLSINDLVSKANDPNVEVLAPVEGAPVYCDGAAFRKGDE 212 (257)
T ss_dssp HHHHHHH-HTTCCGGGEEECSSHHHHHHHHHHTSCSEEEEEHHHHHHHHHHHCCTTEEEECSCBTCCCEEBCCEECGGGH
T ss_pred ccHHHHH-hcCCCCceEEEcCCHHHHHHHHHcCCCcEEEcCHHHHHHHHHhCCCcceeeecccCCccccceEEEEcCCCH
Confidence 9888885 445556688899999999999999999999999999998887643 4555543211 2467789999987
Q ss_pred -chHHHHHHHHhhhccccHHHHHHHhc
Q 002211 798 -LAIDMSTAILTLSENGELQRIHDKWL 823 (953)
Q Consensus 798 -l~~~~n~~i~~l~e~G~~~~~~~~w~ 823 (953)
+.+.||++|.++.++|.++++.++|.
T Consensus 213 ~l~~~l~~~l~~~~~~g~~~~i~~k~~ 239 (257)
T 2q88_A 213 ALRDAFDVELAKLKESGEFAKIIEPYG 239 (257)
T ss_dssp HHHHHHHHHHHHHHHHTHHHHHHGGGT
T ss_pred HHHHHHHHHHHHHHhCCcHHHHHHHhC
Confidence 99999999999999999999999994
No 66
>3qax_A Probable ABC transporter arginine-binding protein; periplasmic, transport PR; HET: ARG; 2.00A {Chlamydophila pneumoniae} PDB: 3g41_A* 3n26_A*
Probab=99.83 E-value=6.1e-20 Score=195.34 Aligned_cols=218 Identities=21% Similarity=0.304 Sum_probs=192.8
Q ss_pred CCcceEEEecCcccccccEEeeCCcceEEEeeHHHHHHHHHhCCCcccEEEeeCCCCCCCCChHHHHHHHHcCceeEEEe
Q 002211 483 NGRQLRIGVPNRVSYRDFVFKVNGTDIVHGYCIDVFLAAVRLLPYAVPYKFIPYGDGHKNPTYSELINQITTGVFDAAVG 562 (953)
Q Consensus 483 ~g~~lri~v~~~~~~~p~~~~~~~~~~~~G~~~dll~~la~~l~~~~~~~~~~~~~~~~n~~~~~~i~~l~~g~~Di~~~ 562 (953)
..++|+|++.. .++||.+.+. ++++.|+++|+++.+++++|++++++.. +|.+++..+.+|++|++++
T Consensus 29 ~~~~l~v~~~~--~~~P~~~~~~-~g~~~G~~~dl~~~i~~~~g~~~~~~~~---------~~~~~~~~l~~g~~D~~~~ 96 (268)
T 3qax_A 29 RNRIWIVGTNA--TYPPFEYVDA-QGEVVGFDIDLAKAISEKLGKQLEVREF---------AFDALILNLKKHRIDAILA 96 (268)
T ss_dssp --CEEEEEECS--CBTTTBEECT-TSCEESHHHHHHHHHHHHHTCEEEEEEC---------CGGGHHHHHHHTSSSEECS
T ss_pred cCCeEEEEECC--CCCCceEECC-CCCEEEEEHHHHHHHHHHhCCeEEEEec---------CHHHHHHHHhCCCccEEee
Confidence 34679999975 7899998875 7899999999999999999977555443 4999999999999999988
Q ss_pred cEEEecCccceeeccccce--ecceEEEEecccCCcCcceeeccCchhHHHHHHHHHHHHHHHhhhhhcccCCCCCCCCc
Q 002211 563 DIAIVTNRTKAVDFTQPYI--ESGLVVVAPVRKLNSSAWAFLRPFTPLMWAVTGVFFLVVGTVVWILEHRLNDEFRGPPR 640 (953)
Q Consensus 563 ~~~~t~~r~~~vdft~p~~--~~~~~~~v~~~~~~~~~~~~l~PF~~~vW~~i~~~~~~~~~~~~~l~~~~~~~~~~~~~ 640 (953)
++..+++|.+.++| .||. ..+..+++++..
T Consensus 97 ~~~~~~~r~~~~~~-~p~~~~~~~~~~~~~~~~----------------------------------------------- 128 (268)
T 3qax_A 97 GMSITPSRQKEIAL-LPYYGDEVQELMVVSKRS----------------------------------------------- 128 (268)
T ss_dssp CCBCCHHHHTTSEE-EEEECCCBCEEEEEEETT-----------------------------------------------
T ss_pred cCccCHhHhcceee-ecceecccceEEEEECCC-----------------------------------------------
Confidence 89999999999999 9999 899999998875
Q ss_pred ccchhhHHHHHHHhhccccCCcccchhHHHHHHHHHHHHHhhhhcccceeeeeeeccccCCCCChHHhhhCCCeEEEEeC
Q 002211 641 KQIVTVLWFSFSTMFFAHRENTVSTLGRVVLIIWLFVVLIITSSYTASLTSILTVQQLSSPIKGIDTLMTSNDRVGYQVG 720 (953)
Q Consensus 641 ~~~~~~~~~~~~~l~~~~~~~~~s~~~R~l~~~w~~~~lil~~~Yta~L~s~Lt~~~~~~~I~sl~dL~~~~~~ig~~~~ 720 (953)
..|++++||. |++||+..|
T Consensus 129 -----------------------------------------------------------~~i~~~~dL~--g~~i~~~~g 147 (268)
T 3qax_A 129 -----------------------------------------------------------LETPVLPLTQ--YSSVAVQTG 147 (268)
T ss_dssp -----------------------------------------------------------SCSCCCCGGG--SSCEEEETT
T ss_pred -----------------------------------------------------------CCCCCHHHhC--CCEEEEecC
Confidence 4788999996 889999999
Q ss_pred chHHHHHHHhhCCCccceEeCCCHHHHHHHHHcCCcEEEEccchhHHHHHhcCcceEEeCCccccCc----cEEEecCCC
Q 002211 721 SFAENYLIEELSIPKSRLVALGSPEEYAIALENRTVAAVVDERPYIDLFLSDHCQFSVRGQEFTKSG----WGFAFPRDS 796 (953)
Q Consensus 721 s~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~g~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~----~~~~~~k~s 796 (953)
+....++.+ .+..+++.+++.++++++|.+|++|+++.+...+.+++.+..++.+++..+...+ ++++++|++
T Consensus 148 ~~~~~~l~~---~~~~~~~~~~~~~~~~~~l~~G~vDa~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~ 224 (268)
T 3qax_A 148 TYQEHYLLS---QPGICVRSFDSTLEVIMEVRYGKSPVAVLEPSVGRVVLKDFPNLVATRLELPPECWVLGCGLGVAKDR 224 (268)
T ss_dssp SHHHHHHHT---STTCCEEEESCHHHHHHHHHTTSSSEEEECHHHHHHHGGGCTTEEEEEEECCGGGCBCCEEEEECTTC
T ss_pred cHHHHHHHh---CCCceEEecCCHHHHHHHHHcCCCCEEEecHHHHHHHHHhCCCcEEecCccCcccccccEEEEEeCCC
Confidence 998888854 3456788899999999999999999999999999999988777888876666666 999999999
Q ss_pred c-chHHHHHHHHhhhccccHHHHHHHhcc
Q 002211 797 P-LAIDMSTAILTLSENGELQRIHDKWLR 824 (953)
Q Consensus 797 p-l~~~~n~~i~~l~e~G~~~~~~~~w~~ 824 (953)
| +++.+|++|.++.++|.++++.++|+.
T Consensus 225 ~~l~~~l~~~l~~l~~~g~~~~i~~k~~~ 253 (268)
T 3qax_A 225 PEEIQTIQQAITDLKSEGVIQSLTKKWQL 253 (268)
T ss_dssp HHHHHHHHHHHHHHHHTTHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHHHHHCCcHHHHHHHHcC
Confidence 8 999999999999999999999999997
No 67
>2pyy_A Ionotropic glutamate receptor bacterial homologue; GLUR0 ligand binding domain, transport protein; HET: GLU; 2.10A {Nostoc punctiforme}
Probab=99.83 E-value=4e-20 Score=191.39 Aligned_cols=218 Identities=25% Similarity=0.413 Sum_probs=184.1
Q ss_pred cceEEEecCcccccccEEeeCCcceEEEeeHHHHHHHHHhCCCcccEEEeeCCCCCCCCChHHHHHHHHcCceeEEEecE
Q 002211 485 RQLRIGVPNRVSYRDFVFKVNGTDIVHGYCIDVFLAAVRLLPYAVPYKFIPYGDGHKNPTYSELINQITTGVFDAAVGDI 564 (953)
Q Consensus 485 ~~lri~v~~~~~~~p~~~~~~~~~~~~G~~~dll~~la~~l~~~~~~~~~~~~~~~~n~~~~~~i~~l~~g~~Di~~~~~ 564 (953)
++|+|++. +++||.+. . ++++.|+++|+++.+++++|++++++.. .+|.+++..+.+|++|++++++
T Consensus 3 ~~l~v~~~---~~~P~~~~-~-~g~~~G~~~dl~~~~~~~~g~~~~~~~~--------~~~~~~~~~l~~g~~D~~~~~~ 69 (228)
T 2pyy_A 3 QPLLVATR---VIPPFVLS-N-KGELSGFSIDLWRSIATQIGIESKLIEY--------SSVPELISAIKDNKVNLGIAAI 69 (228)
T ss_dssp -CEEEEEC---CBTTTBBC-C----CBSHHHHHHHHHHHHHTCCEEEEEC--------SSHHHHHHHHHTTSCSEECSSC
T ss_pred ceEEEEec---CCCCeEEe-c-CCceEEEeHHHHHHHHHHhCCcEEEEEc--------CCHHHHHHHHHCCCcCEEEecc
Confidence 57999997 47888877 3 6789999999999999999977666554 3599999999999999998888
Q ss_pred EEecCccceeeccccceecceEEEEecccCCcCcceeeccCchhHHHHHHHHHHHHHHHhhhhhcccCCCCCCCCcccch
Q 002211 565 AIVTNRTKAVDFTQPYIESGLVVVAPVRKLNSSAWAFLRPFTPLMWAVTGVFFLVVGTVVWILEHRLNDEFRGPPRKQIV 644 (953)
Q Consensus 565 ~~t~~r~~~vdft~p~~~~~~~~~v~~~~~~~~~~~~l~PF~~~vW~~i~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~ 644 (953)
..+.+|.+.+.|+.||...+.++++++..+.
T Consensus 70 ~~~~~r~~~~~~~~p~~~~~~~~~~~~~~~~------------------------------------------------- 100 (228)
T 2pyy_A 70 SITAEREQNFDFSLPIFASGLQIMVRNLESG------------------------------------------------- 100 (228)
T ss_dssp BCCHHHHHHSEECSCSEEEEEEEEEEC-----------------------------------------------------
T ss_pred ccCHHHHccceecccchhcceEEEEECCccc-------------------------------------------------
Confidence 8899999999999999999999999877610
Q ss_pred hhHHHHHHHhhccccCCcccchhHHHHHHHHHHHHHhhhhcccceeeeeeeccccCCCCChHHhhhCCCeEEEEeCchHH
Q 002211 645 TVLWFSFSTMFFAHRENTVSTLGRVVLIIWLFVVLIITSSYTASLTSILTVQQLSSPIKGIDTLMTSNDRVGYQVGSFAE 724 (953)
Q Consensus 645 ~~~~~~~~~l~~~~~~~~~s~~~R~l~~~w~~~~lil~~~Yta~L~s~Lt~~~~~~~I~sl~dL~~~~~~ig~~~~s~~~ 724 (953)
...+++++||. |++||+..|+...
T Consensus 101 ------------------------------------------------------~~~~~~~~dL~--g~~i~~~~g~~~~ 124 (228)
T 2pyy_A 101 ------------------------------------------------------TGDIRSIDDLP--GKVVATTAGSTAA 124 (228)
T ss_dssp -------------------------------------------------------CCCCSGGGCT--TCEEEEETTSHHH
T ss_pred ------------------------------------------------------cCCcCCHHHcC--CCeEEEEcCcHHH
Confidence 13688999996 8999999999988
Q ss_pred HHHHHhhCCCccceEeCCCHHHHHHHHHcCCcEEEEccchhHHHHHhcCc--ceEEeCCccccCccEEEecCCCcchHHH
Q 002211 725 NYLIEELSIPKSRLVALGSPEEYAIALENRTVAAVVDERPYIDLFLSDHC--QFSVRGQEFTKSGWGFAFPRDSPLAIDM 802 (953)
Q Consensus 725 ~~l~~~~~~~~~~~~~~~~~~~~~~~l~~g~~~a~~~~~~~~~~~~~~~~--~l~~~~~~~~~~~~~~~~~k~spl~~~~ 802 (953)
.++.+ . ..+++.+.+.++++++|.+|++|+++.+...+.+++.+.. ++.+++..+...+++++++|++++.+.+
T Consensus 125 ~~l~~-~---~~~~~~~~~~~~~~~~l~~g~~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 200 (228)
T 2pyy_A 125 TYLRE-H---HISVLEVPKIEEAYKALQTKKADAVVFDAPVLLFYAANEGKGKVEIVGSILREESYGIILPNNSPYRKPI 200 (228)
T ss_dssp HHHHH-T---TCEEEEESSHHHHHHHHHTTSSSEEEEEHHHHHHHHHTTTTTTEEEEEEEEEEEEECCEECTTCTTHHHH
T ss_pred HHHHH-c---CCceEecCCHHHHHHHHHcCCCCEEEecHHHHHHHHHhCCCCcEEEecccccceeEEEEEeCChHHHHHH
Confidence 88854 3 3367788999999999999999999999999988877743 6887776666678899999999999999
Q ss_pred HHHHHhhhccccHHHHHHHhcc
Q 002211 803 STAILTLSENGELQRIHDKWLR 824 (953)
Q Consensus 803 n~~i~~l~e~G~~~~~~~~w~~ 824 (953)
|++|.++.++|.++++.+||+.
T Consensus 201 ~~~l~~l~~~g~~~~i~~k~~~ 222 (228)
T 2pyy_A 201 NQALLNLKENGTYQSLYDKWFD 222 (228)
T ss_dssp HHHHHHHHHTTHHHHHHHHHHC
T ss_pred HHHHHHHHhCCcHHHHHHHHcC
Confidence 9999999999999999999997
No 68
>4i62_A Amino acid ABC transporter, periplasmic amino ACI protein, putative; center for structural genomics of infectious diseases (csgid national institute of allergy and infectious diseases (NIAI niaid; HET: ARG; 1.05A {Streptococcus pneumoniae}
Probab=99.82 E-value=7.6e-20 Score=194.73 Aligned_cols=220 Identities=21% Similarity=0.374 Sum_probs=191.8
Q ss_pred CcceEEEecCcccccccEE---eeCCcceEEEeeHHHHHHHHHhCCCcccEEEeeCCCCCCCCChHHHHHHHHcCceeEE
Q 002211 484 GRQLRIGVPNRVSYRDFVF---KVNGTDIVHGYCIDVFLAAVRLLPYAVPYKFIPYGDGHKNPTYSELINQITTGVFDAA 560 (953)
Q Consensus 484 g~~lri~v~~~~~~~p~~~---~~~~~~~~~G~~~dll~~la~~l~~~~~~~~~~~~~~~~n~~~~~~i~~l~~g~~Di~ 560 (953)
.++|+|++.. .|+||.+ .+ +++.+.|+++|+++.+++++|++++++.. +|.+++..+.+|++|++
T Consensus 38 ~~~l~v~~~~--~~~P~~~~~~~~-~~g~~~G~~~dl~~~~~~~~g~~~~~~~~---------~~~~~~~~l~~g~~D~~ 105 (269)
T 4i62_A 38 KGKLVVALNP--DFAPFEYQKVVD-GKNQIVGSDIELAKAIATELGVELELSPM---------SFDNVLASVQSGKADLA 105 (269)
T ss_dssp HTEEEEEECS--CBTTTBEEEEET-TEEEEESHHHHHHHHHHHHHTCEEEEEEC---------CHHHHHHHHHTTSCSEE
T ss_pred CCeEEEEecC--CCCCceeecccC-CCCcEeeecHHHHHHHHHHHCCceEEEEc---------CHHHHHHHHhCCCccEE
Confidence 4579999974 7899988 54 37899999999999999999977555543 49999999999999999
Q ss_pred EecEEEecCccceeeccccceecceEEEEecccCCcCcceeeccCchhHHHHHHHHHHHHHHHhhhhhcccCCCCCCCCc
Q 002211 561 VGDIAIVTNRTKAVDFTQPYIESGLVVVAPVRKLNSSAWAFLRPFTPLMWAVTGVFFLVVGTVVWILEHRLNDEFRGPPR 640 (953)
Q Consensus 561 ~~~~~~t~~r~~~vdft~p~~~~~~~~~v~~~~~~~~~~~~l~PF~~~vW~~i~~~~~~~~~~~~~l~~~~~~~~~~~~~ 640 (953)
++++..+.+|.+.+.|+.||.....++++++...
T Consensus 106 ~~~~~~~~~r~~~~~~s~p~~~~~~~~~~~~~~~---------------------------------------------- 139 (269)
T 4i62_A 106 ISGVSKTDERSKVFDFSTPYYTAKNKLIVKKSDL---------------------------------------------- 139 (269)
T ss_dssp CSSCBCCHHHHTTEEECSCCEECCEEEEEEGGGT----------------------------------------------
T ss_pred ecCCcCCHhHhhceecccchhhcceEEEEECCcc----------------------------------------------
Confidence 9889999999999999999999999999988751
Q ss_pred ccchhhHHHHHHHhhccccCCcccchhHHHHHHHHHHHHHhhhhcccceeeeeeeccccCCCCChHHhhhCCCeEEEEeC
Q 002211 641 KQIVTVLWFSFSTMFFAHRENTVSTLGRVVLIIWLFVVLIITSSYTASLTSILTVQQLSSPIKGIDTLMTSNDRVGYQVG 720 (953)
Q Consensus 641 ~~~~~~~~~~~~~l~~~~~~~~~s~~~R~l~~~w~~~~lil~~~Yta~L~s~Lt~~~~~~~I~sl~dL~~~~~~ig~~~~ 720 (953)
..|++++||. |++||+..|
T Consensus 140 -----------------------------------------------------------~~i~~~~dL~--g~~i~~~~g 158 (269)
T 4i62_A 140 -----------------------------------------------------------ATYQSVNDLA--QKKVGAQKG 158 (269)
T ss_dssp -----------------------------------------------------------TTCSSGGGGC---CEEEEETT
T ss_pred -----------------------------------------------------------ccccCHHHhC--CCeEEEecC
Confidence 4789999996 899999999
Q ss_pred chHHHHHHHhhCCCccceEeCCCHHHHHHHHHcCCcEEEEccchhHHHHHhcCcceEEeCCccc---cCccEEEecCCCc
Q 002211 721 SFAENYLIEELSIPKSRLVALGSPEEYAIALENRTVAAVVDERPYIDLFLSDHCQFSVRGQEFT---KSGWGFAFPRDSP 797 (953)
Q Consensus 721 s~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~g~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~---~~~~~~~~~k~sp 797 (953)
+....++.+.. +..+++.+++.++++++|.+|++|+++.+.+.+.+++.+...+.+....+. ..+++++++|++|
T Consensus 159 ~~~~~~l~~~~--~~~~~~~~~~~~~~~~~l~~g~vDa~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 236 (269)
T 4i62_A 159 SIQETMAKDLL--QNSSLVSLPKNGNLITDLKSGQVDAVIFEEPVAKGFVENNPDLAIADLNFEKEQDDSYAVAMKKDSK 236 (269)
T ss_dssp SHHHHHHHHHC--TTSEEEEESCHHHHHHHHHTTSSSEEEEEHHHHHHHHHHCTTEEECSCCCCC-CCCEECCEEESSCH
T ss_pred chHHHHHHHhC--CCCcEEecCCHHHHHHHHHcCCCCEEEeChHHHHHHHHhCCCCeEEeeccCCCcccceEEEEeCCCH
Confidence 99988886543 346788899999999999999999999999999999888777777655443 5678999999998
Q ss_pred -chHHHHHHHHhhhccccHHHHHHHhcc
Q 002211 798 -LAIDMSTAILTLSENGELQRIHDKWLR 824 (953)
Q Consensus 798 -l~~~~n~~i~~l~e~G~~~~~~~~w~~ 824 (953)
+.+.||++|.++.++|.++++.++|+.
T Consensus 237 ~l~~~l~~~l~~l~~~g~~~~i~~k~~~ 264 (269)
T 4i62_A 237 ELKEAVDKTIQKLKESGELDKLIEDAFK 264 (269)
T ss_dssp HHHHHHHHHHHHHHHTTHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhCChHHHHHHHHhC
Confidence 999999999999999999999999997
No 69
>1xt8_A Putative amino-acid transporter periplasmic solut protein; ABC transport, cysteine uptake; 2.00A {Campylobacter jejuni} SCOP: c.94.1.1
Probab=99.82 E-value=1.1e-19 Score=196.29 Aligned_cols=218 Identities=18% Similarity=0.292 Sum_probs=191.4
Q ss_pred CcceEEEecCcccccccEEeeCCcceEEEeeHHHHHHHHHhC---CCcccEEEeeCCCCCCCCChHHHHHHHHcCceeEE
Q 002211 484 GRQLRIGVPNRVSYRDFVFKVNGTDIVHGYCIDVFLAAVRLL---PYAVPYKFIPYGDGHKNPTYSELINQITTGVFDAA 560 (953)
Q Consensus 484 g~~lri~v~~~~~~~p~~~~~~~~~~~~G~~~dll~~la~~l---~~~~~~~~~~~~~~~~n~~~~~~i~~l~~g~~Di~ 560 (953)
.++|+|++.. +++||.+.+. ++...|+++|+++.+++++ |++++++.. .|.+++..+.+|++|++
T Consensus 43 ~~~l~v~~~~--~~~P~~~~~~-~g~~~G~~~dl~~~i~~~~~~~g~~~~~~~~---------~~~~~~~~l~~G~~D~~ 110 (292)
T 1xt8_A 43 NGVVRIGVFG--DKPPFGYVDE-KGNNQGYDIALAKRIAKELFGDENKVQFVLV---------EAANRVEFLKSNKVDII 110 (292)
T ss_dssp HSSEEEEECS--EETTTEEECT-TSCEESHHHHHHHHHHHHHHSCTTCEEEEEC---------CGGGHHHHHHTTSCSEE
T ss_pred CCeEEEEECC--CCCCeeEECC-CCCEeeEhHHHHHHHHHHhccCCceEEEEEc---------CHHHHHHHHhCCCeeEE
Confidence 4679999975 7999998874 6889999999999999999 977665543 39999999999999999
Q ss_pred EecEEEecCccceeeccccceecceEEEEecccCCcCcceeeccCchhHHHHHHHHHHHHHHHhhhhhcccCCCCCCCCc
Q 002211 561 VGDIAIVTNRTKAVDFTQPYIESGLVVVAPVRKLNSSAWAFLRPFTPLMWAVTGVFFLVVGTVVWILEHRLNDEFRGPPR 640 (953)
Q Consensus 561 ~~~~~~t~~r~~~vdft~p~~~~~~~~~v~~~~~~~~~~~~l~PF~~~vW~~i~~~~~~~~~~~~~l~~~~~~~~~~~~~ 640 (953)
++++..+.+|.+.++|+.||...+.++++++..
T Consensus 111 ~~~~~~~~~r~~~~~~s~p~~~~~~~~~~~~~~----------------------------------------------- 143 (292)
T 1xt8_A 111 LANFTQTPQRAEQVDFCSPYMKVALGVAVPKDS----------------------------------------------- 143 (292)
T ss_dssp CSSCBCCHHHHTTEEECCCCEEEEEEEEEETTC-----------------------------------------------
T ss_pred eecCCCCcchhcceeeeccceecceEEEEECCC-----------------------------------------------
Confidence 887888999999999999999999999988654
Q ss_pred ccchhhHHHHHHHhhccccCCcccchhHHHHHHHHHHHHHhhhhcccceeeeeeeccccCCCCChHHhhhCCCeEEEEeC
Q 002211 641 KQIVTVLWFSFSTMFFAHRENTVSTLGRVVLIIWLFVVLIITSSYTASLTSILTVQQLSSPIKGIDTLMTSNDRVGYQVG 720 (953)
Q Consensus 641 ~~~~~~~~~~~~~l~~~~~~~~~s~~~R~l~~~w~~~~lil~~~Yta~L~s~Lt~~~~~~~I~sl~dL~~~~~~ig~~~~ 720 (953)
+|++++||. |++||+..|
T Consensus 144 ------------------------------------------------------------~i~~~~dL~--g~~i~~~~g 161 (292)
T 1xt8_A 144 ------------------------------------------------------------NITSVEDLK--DKTLLLNKG 161 (292)
T ss_dssp ------------------------------------------------------------CCCSSGGGT--TSEEEEETT
T ss_pred ------------------------------------------------------------CCCCHHHhC--CCEEEEeCC
Confidence 678899996 899999999
Q ss_pred chHHHHHHHhhCCCccceEeCCCHHHHHHHHHcCCcEEEEccchhHHHHHhcCcceEEeCCccccCcc-EEEecCCCc-c
Q 002211 721 SFAENYLIEELSIPKSRLVALGSPEEYAIALENRTVAAVVDERPYIDLFLSDHCQFSVRGQEFTKSGW-GFAFPRDSP-L 798 (953)
Q Consensus 721 s~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~g~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~-~~~~~k~sp-l 798 (953)
+....++.+.. +..+++.+.+.++.+++|.+|++|+++.+...+.+++.+..++.+++..+...++ +++++|++| +
T Consensus 162 ~~~~~~l~~~~--~~~~~~~~~~~~~~~~~L~~G~vDa~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~k~~~~l 239 (292)
T 1xt8_A 162 TTADAYFTQNY--PNIKTLKYDQNTETFAALMDKRGDALSHDNTLLFAWVKDHPDFKMGIKELGNKDVIAPAVKKGDKEL 239 (292)
T ss_dssp SHHHHHHHHHC--TTSEEEEESSHHHHHHHHHTTSSSEEEEEHHHHHHHHHHCTTEEEEEEEEEEEEEECCEEETTCHHH
T ss_pred CcHHHHHHHhC--CCceEEEcCCHHHHHHHHHcCCccEEEecHHHHHHHHHhCCCeEEcccccccCceeEEEEeCCCHHH
Confidence 98888886543 3456788899999999999999999999999999998887678887766666777 999999998 9
Q ss_pred hHHHHHHHHhhhccccHHHHHHHhcc
Q 002211 799 AIDMSTAILTLSENGELQRIHDKWLR 824 (953)
Q Consensus 799 ~~~~n~~i~~l~e~G~~~~~~~~w~~ 824 (953)
.+.+|++|.++.++|.++++.++|+.
T Consensus 240 ~~~l~~~l~~l~~~g~~~~i~~k~~~ 265 (292)
T 1xt8_A 240 KEFIDNLIIKLGQEQFFHKAYDETLK 265 (292)
T ss_dssp HHHHHHHHHHHHTTTHHHHHHHHHTG
T ss_pred HHHHHHHHHHHHhCcHHHHHHHHhcC
Confidence 99999999999999999999999997
No 70
>2yjp_A Putative ABC transporter, periplasmic binding Pro amino acid; transport protein, solute-binding protein; 2.26A {Neisseria gonorrhoeae}
Probab=99.82 E-value=1.4e-19 Score=195.28 Aligned_cols=217 Identities=20% Similarity=0.323 Sum_probs=191.6
Q ss_pred cceEEEecCcccccccEEeeCCcceEEEeeHHHHHHHHHhC---CCcccEEEeeCCCCCCCCChHHHHHHHHcCceeEEE
Q 002211 485 RQLRIGVPNRVSYRDFVFKVNGTDIVHGYCIDVFLAAVRLL---PYAVPYKFIPYGDGHKNPTYSELINQITTGVFDAAV 561 (953)
Q Consensus 485 ~~lri~v~~~~~~~p~~~~~~~~~~~~G~~~dll~~la~~l---~~~~~~~~~~~~~~~~n~~~~~~i~~l~~g~~Di~~ 561 (953)
++|||++.. +|+||.+.+. ++.+.|+.+|+++.+++++ |++++++.. .|.+++..|.+|++|+++
T Consensus 55 ~~l~vg~~~--~~~P~~~~~~-~g~~~G~~~dl~~~i~~~~~~~g~~v~~~~~---------~~~~~~~~l~~G~~D~~~ 122 (291)
T 2yjp_A 55 GVIRIGVFG--DKPPFGYVDA-NGKNQGFDVEIAKDLAKDLLGSPDKVEFVLT---------EAANRVEYVRSGKVDLIL 122 (291)
T ss_dssp TCEEEEECS--EETTTEEECT-TSCEESHHHHHHHHHHHHHHSCGGGEEEEEC---------CGGGHHHHHHTTSCSEEC
T ss_pred CeEEEEEcC--CCCCceEECC-CCCEeehHHHHHHHHHHHhccCCceEEEEEc---------cHHHHHHHHhCCCeeEEE
Confidence 579999974 7999998875 7899999999999999999 976555443 389999999999999999
Q ss_pred ecEEEecCccceeeccccceecceEEEEecccCCcCcceeeccCchhHHHHHHHHHHHHHHHhhhhhcccCCCCCCCCcc
Q 002211 562 GDIAIVTNRTKAVDFTQPYIESGLVVVAPVRKLNSSAWAFLRPFTPLMWAVTGVFFLVVGTVVWILEHRLNDEFRGPPRK 641 (953)
Q Consensus 562 ~~~~~t~~r~~~vdft~p~~~~~~~~~v~~~~~~~~~~~~l~PF~~~vW~~i~~~~~~~~~~~~~l~~~~~~~~~~~~~~ 641 (953)
+++..+.+|.+.++|+.||...+.++++++..
T Consensus 123 ~~~~~~~~r~~~~~~~~p~~~~~~~l~~~~~~------------------------------------------------ 154 (291)
T 2yjp_A 123 ANFTQTPERAEAVDFADPYMKVALGVVSPKNK------------------------------------------------ 154 (291)
T ss_dssp SSCBCCHHHHTTEEECCCCEEECEEEEEETTS------------------------------------------------
T ss_pred eCCCCChHHHccceeccCeeecceEEEEeCCC------------------------------------------------
Confidence 88888999999999999999999999988655
Q ss_pred cchhhHHHHHHHhhccccCCcccchhHHHHHHHHHHHHHhhhhcccceeeeeeeccccCCCCChHHhhhCCCeEEEEeCc
Q 002211 642 QIVTVLWFSFSTMFFAHRENTVSTLGRVVLIIWLFVVLIITSSYTASLTSILTVQQLSSPIKGIDTLMTSNDRVGYQVGS 721 (953)
Q Consensus 642 ~~~~~~~~~~~~l~~~~~~~~~s~~~R~l~~~w~~~~lil~~~Yta~L~s~Lt~~~~~~~I~sl~dL~~~~~~ig~~~~s 721 (953)
.|++++||. |++||+..|+
T Consensus 155 -----------------------------------------------------------~i~sl~dL~--gk~v~~~~g~ 173 (291)
T 2yjp_A 155 -----------------------------------------------------------PITDMAQLK--DQTLLVNKGT 173 (291)
T ss_dssp -----------------------------------------------------------CCCSGGGGT--TSEEEEETTS
T ss_pred -----------------------------------------------------------CCCCHHHhC--CCEEEEecCC
Confidence 688999996 8999999999
Q ss_pred hHHHHHHHhhCCCccceEeCCCHHHHHHHHHcCCcEEEEccchhHHHHHhcCcceEEeCCccccCcc-EEEecCCCc-ch
Q 002211 722 FAENYLIEELSIPKSRLVALGSPEEYAIALENRTVAAVVDERPYIDLFLSDHCQFSVRGQEFTKSGW-GFAFPRDSP-LA 799 (953)
Q Consensus 722 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~g~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~-~~~~~k~sp-l~ 799 (953)
....++.+.. +..+++.+.+.++++++|.+|++|+++.+.+.+.+++.+..++.++...+...++ +++++|++| +.
T Consensus 174 ~~~~~l~~~~--~~~~~~~~~~~~~~~~~l~~G~vDa~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~l~ 251 (291)
T 2yjp_A 174 TADAFFTKSH--PEVKLLKFDQNTETFDALKDGRGVALAHDNALLWAWAKENPNFEVAIGNLGPAEFIAPAVQKGNADLL 251 (291)
T ss_dssp HHHHHHHHHC--TTSEEEEESSHHHHHHHHHTTSSSEEEEEHHHHHHHHHHCTTEEEEECCSSSCEEECCEEETTCHHHH
T ss_pred cHHHHHHHhC--CCceEEEeCCHHHHHHHHHcCCccEEEecHHHHHHHHHhCCCeEEcCCcccCCcceEEEEeCCCHHHH
Confidence 9888886543 3457788899999999999999999999999999988877778888777777777 999999998 99
Q ss_pred HHHHHHHHhhhccccHHHHHHHhcc
Q 002211 800 IDMSTAILTLSENGELQRIHDKWLR 824 (953)
Q Consensus 800 ~~~n~~i~~l~e~G~~~~~~~~w~~ 824 (953)
+.||++|.++.++|.++++.++|+.
T Consensus 252 ~~l~~al~~l~~~g~~~~i~~k~~~ 276 (291)
T 2yjp_A 252 NWVNGEIAAMKKDGRLKAAYEKTLL 276 (291)
T ss_dssp HHHHHHHHHHHHHSHHHHHHHHHTH
T ss_pred HHHHHHHHHHHhCChHHHHHHHhcc
Confidence 9999999999999999999999987
No 71
>2vha_A Periplasmic binding transport protein; periplasmic binding protein, ligand binding, ultrahigh resolution; HET: GLU; 1.00A {Shigella flexneri} PDB: 2ia4_A*
Probab=99.81 E-value=1.9e-19 Score=193.84 Aligned_cols=220 Identities=21% Similarity=0.281 Sum_probs=189.6
Q ss_pred CcceEEEecCcccccccEEeeCCcceEEEeeHHHHHHHHHh----CC---CcccEEEeeCCCCCCCCChHHHHHHHHcCc
Q 002211 484 GRQLRIGVPNRVSYRDFVFKVNGTDIVHGYCIDVFLAAVRL----LP---YAVPYKFIPYGDGHKNPTYSELINQITTGV 556 (953)
Q Consensus 484 g~~lri~v~~~~~~~p~~~~~~~~~~~~G~~~dll~~la~~----l~---~~~~~~~~~~~~~~~n~~~~~~i~~l~~g~ 556 (953)
.++|+|++.. +|+||.+.+. ++++.|+++|+++.+++. +| ++ +++++ ..|.+++..+.+|+
T Consensus 16 ~~~l~v~~~~--~~~P~~~~~~-~g~~~G~~~dl~~~ia~~l~~~~G~~~~~--v~~~~-------~~~~~~~~~l~~g~ 83 (287)
T 2vha_A 16 NGVIVVGHRE--SSVPFSYYDN-QQKVVGYSQDYSNAIVEAVKKKLNKPDLQ--VKLIP-------ITSQNRIPLLQNGT 83 (287)
T ss_dssp HTEEEEEECS--EETTTEEECS-SSCEESHHHHHHHHHHHHHHHHTTCTTCE--EEEEE-------CCTTTHHHHHHTTS
T ss_pred CCeEEEEEcC--CCCCceEECC-CCCcccccHHHHHHHHHHHHHhcCCCCce--EEEEE-------CCHHHHHHHHHCCC
Confidence 4679999975 7999999875 688999999999999976 56 55 44444 34889999999999
Q ss_pred eeEEEecEEEecCccceeeccccceecceEEEEecccCCcCcceeeccCchhHHHHHHHHHHHHHHHhhhhhcccCCCCC
Q 002211 557 FDAAVGDIAIVTNRTKAVDFTQPYIESGLVVVAPVRKLNSSAWAFLRPFTPLMWAVTGVFFLVVGTVVWILEHRLNDEFR 636 (953)
Q Consensus 557 ~Di~~~~~~~t~~r~~~vdft~p~~~~~~~~~v~~~~~~~~~~~~l~PF~~~vW~~i~~~~~~~~~~~~~l~~~~~~~~~ 636 (953)
+|++++++..+++|.+.++||.||...+.++++++..
T Consensus 84 ~D~~~~~~~~t~~r~~~~~~s~p~~~~~~~l~~~~~~------------------------------------------- 120 (287)
T 2vha_A 84 FDFECGSTTNNVERQKQAAFSDTIFVVGTRLLTKKGG------------------------------------------- 120 (287)
T ss_dssp CSEECSSCBCCHHHHTTCEEEEEEEEEEEEEEEETTS-------------------------------------------
T ss_pred eeEEeccccCCcchhhcccccceeeecceEEEEECCC-------------------------------------------
Confidence 9999888889999999999999999999999998665
Q ss_pred CCCcccchhhHHHHHHHhhccccCCcccchhHHHHHHHHHHHHHhhhhcccceeeeeeeccccCCCCChHHhhhCCCeEE
Q 002211 637 GPPRKQIVTVLWFSFSTMFFAHRENTVSTLGRVVLIIWLFVVLIITSSYTASLTSILTVQQLSSPIKGIDTLMTSNDRVG 716 (953)
Q Consensus 637 ~~~~~~~~~~~~~~~~~l~~~~~~~~~s~~~R~l~~~w~~~~lil~~~Yta~L~s~Lt~~~~~~~I~sl~dL~~~~~~ig 716 (953)
+|++++||. |++||
T Consensus 121 ----------------------------------------------------------------~i~sl~dL~--g~~v~ 134 (287)
T 2vha_A 121 ----------------------------------------------------------------DIKDFADLK--GKAVV 134 (287)
T ss_dssp ----------------------------------------------------------------SCCSGGGGT--TCEEE
T ss_pred ----------------------------------------------------------------CCCCHHHcC--CCEEE
Confidence 578999996 88999
Q ss_pred EEeCchHHHHHHHhhC--CCccceEeCCCHHHHHHHHHcCCcEEEEccchhHHHHHhcC---cceEEeCCccccCccEEE
Q 002211 717 YQVGSFAENYLIEELS--IPKSRLVALGSPEEYAIALENRTVAAVVDERPYIDLFLSDH---CQFSVRGQEFTKSGWGFA 791 (953)
Q Consensus 717 ~~~~s~~~~~l~~~~~--~~~~~~~~~~~~~~~~~~l~~g~~~a~~~~~~~~~~~~~~~---~~l~~~~~~~~~~~~~~~ 791 (953)
+..|+....++.+... ....+++.+.+.++++++|.+|++|+++.+...+.+++.+. .++.+++..+...+++++
T Consensus 135 ~~~g~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~G~vDa~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 214 (287)
T 2vha_A 135 VTSGTTSEVLLNKLNEEQKMNMRIISAKDHGDSFRTLESGRAVAFMMDDALLAGERAKAKKPDNWDIVGKPQSQEAYGCM 214 (287)
T ss_dssp EETTSHHHHHHHHHHHHTTCCCEEEEESSHHHHHHHHHTTSCSEEEEEHHHHHHHHTTSSSGGGEEEESCCSCEEEEEEE
T ss_pred EeCCCcHHHHHHHHhhccCCCceEEEcCCHHHHHHHHHcCCeeEEEeChHHHHHHHHhCCCCCceEecCCccccCceEEE
Confidence 9999988887754321 12356788999999999999999999999999998888763 368888877777789999
Q ss_pred ecCCCc-chHHHHHHHHhhhccccHHHHHHHhcc
Q 002211 792 FPRDSP-LAIDMSTAILTLSENGELQRIHDKWLR 824 (953)
Q Consensus 792 ~~k~sp-l~~~~n~~i~~l~e~G~~~~~~~~w~~ 824 (953)
++|++| +++.||++|.++.++|.++++.++|+.
T Consensus 215 ~~k~~~~l~~~l~~~l~~l~~~g~~~~i~~k~~~ 248 (287)
T 2vha_A 215 LRKDDPQFKKLMDDTIAQVQTSGEAEKWFDKWFK 248 (287)
T ss_dssp ECTTCHHHHHHHHHHHHHHHHTTHHHHHHHHHHH
T ss_pred EeCCCHHHHHHHHHHHHHHHhCchHHHHHHHHcC
Confidence 999988 999999999999999999999999998
No 72
>2yln_A Putative ABC transporter, periplasmic binding Pro amino acid; transport protein, solute-BIND protein; HET: CYS GOL; 1.12A {Neisseria gonorrhoeae} PDB: 3zsf_A
Probab=99.81 E-value=1.8e-19 Score=193.47 Aligned_cols=216 Identities=19% Similarity=0.304 Sum_probs=189.4
Q ss_pred CcceEEEecCcccccccEEeeCCcceEEEeeHHHHHHHHHhCCCcccEEEeeCCCCCCCCChHHHHHHHHcCceeEEEec
Q 002211 484 GRQLRIGVPNRVSYRDFVFKVNGTDIVHGYCIDVFLAAVRLLPYAVPYKFIPYGDGHKNPTYSELINQITTGVFDAAVGD 563 (953)
Q Consensus 484 g~~lri~v~~~~~~~p~~~~~~~~~~~~G~~~dll~~la~~l~~~~~~~~~~~~~~~~n~~~~~~i~~l~~g~~Di~~~~ 563 (953)
.++|+|++.. +|+||.+.+. ++.+.|+.+|+++.+++++|++++++.. .|.+++..|.+|++|+++++
T Consensus 56 ~~~l~v~~~~--~~~P~~~~~~-~g~~~G~~~dl~~~i~~~~G~~v~~~~~---------~~~~~~~~l~~G~~D~~~~~ 123 (283)
T 2yln_A 56 KGTVTVGTEG--TYAPFTYHDK-DGKLTGYDVEVTRAVAEKLGVKVEFKET---------QWDSMMAGLKAGRFDVVANQ 123 (283)
T ss_dssp TCEEEEEECS--EETTTEEECT-TSCEESHHHHHHHHHHHHHTCEEEEEEC---------CGGGHHHHHHHTSCSEECSS
T ss_pred CCeEEEEECC--CCCCeeEECC-CCCEeeehHHHHHHHHHHcCCceEEEEC---------CHHHHHHHHHCCCcCEEEec
Confidence 4679999975 6999999874 6889999999999999999977555443 39999999999999999987
Q ss_pred EEE-ecCccceeeccccceecceEEEEecccCCcCcceeeccCchhHHHHHHHHHHHHHHHhhhhhcccCCCCCCCCccc
Q 002211 564 IAI-VTNRTKAVDFTQPYIESGLVVVAPVRKLNSSAWAFLRPFTPLMWAVTGVFFLVVGTVVWILEHRLNDEFRGPPRKQ 642 (953)
Q Consensus 564 ~~~-t~~r~~~vdft~p~~~~~~~~~v~~~~~~~~~~~~l~PF~~~vW~~i~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ 642 (953)
+.. +.+|.+.++|+.||...+..+++++..
T Consensus 124 ~~~~t~~r~~~~~~~~p~~~~~~~l~~~~~~------------------------------------------------- 154 (283)
T 2yln_A 124 VGLTSPERQATFDKSEPYSWSGAVLVAHNDS------------------------------------------------- 154 (283)
T ss_dssp CCCCSHHHHHHEEECSCSEEECEEEEEETTC-------------------------------------------------
T ss_pred CccCChhhhcceEeccCeeeecEEEEEECCC-------------------------------------------------
Confidence 887 899999999999999999999998766
Q ss_pred chhhHHHHHHHhhccccCCcccchhHHHHHHHHHHHHHhhhhcccceeeeeeeccccCCCCChHHhhhCCCeEEEEeCch
Q 002211 643 IVTVLWFSFSTMFFAHRENTVSTLGRVVLIIWLFVVLIITSSYTASLTSILTVQQLSSPIKGIDTLMTSNDRVGYQVGSF 722 (953)
Q Consensus 643 ~~~~~~~~~~~l~~~~~~~~~s~~~R~l~~~w~~~~lil~~~Yta~L~s~Lt~~~~~~~I~sl~dL~~~~~~ig~~~~s~ 722 (953)
+|++++||. |++||+..|+.
T Consensus 155 ----------------------------------------------------------~i~s~~dL~--G~~v~v~~g~~ 174 (283)
T 2yln_A 155 ----------------------------------------------------------NIKSIADIK--GVKTAQSLTSN 174 (283)
T ss_dssp ----------------------------------------------------------SCCSGGGCT--TSEEEECTTSH
T ss_pred ----------------------------------------------------------CCCCHHHhC--CCEEEEecCch
Confidence 488999995 89999999998
Q ss_pred HHHHHHHhhCCCccceEeCCCHHHHHHHHHcCCcEEEEccchhHHHHHhcCc--ceEEeC-Cccc-cCccEEEecCCCc-
Q 002211 723 AENYLIEELSIPKSRLVALGSPEEYAIALENRTVAAVVDERPYIDLFLSDHC--QFSVRG-QEFT-KSGWGFAFPRDSP- 797 (953)
Q Consensus 723 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~g~~~a~~~~~~~~~~~~~~~~--~l~~~~-~~~~-~~~~~~~~~k~sp- 797 (953)
...++.+ . ..+++.+.+..+++++|.+|++|+++.+.+.+.+++.+.. ++.+++ ..+. ..+++++++|++|
T Consensus 175 ~~~~l~~-~---~~~~~~~~~~~~~~~~l~~g~vDa~i~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~i~~~k~~~~ 250 (283)
T 2yln_A 175 YGEKAKA-A---GAQLVPVDGLAQSLTLIEQKRADATLNDELAVLDYLKKNPNAGVKIVWSAPADEKVGSGLIVNKGNDE 250 (283)
T ss_dssp HHHHHHH-T---TCEEEECSSHHHHHHHHHTTSCCEEEEEHHHHHHHHHHSTTSSEEEEEECCGGGCEEECCEEESSCHH
T ss_pred HHHHHHH-c---CCeEEEeCCHHHHHHHHHcCCCCEEEecHHHHHHHHHhCCCCcEEEccCcccCCcccEEEEEeCCCHH
Confidence 8888854 3 3467888999999999999999999999999998877654 488887 6666 6789999999988
Q ss_pred chHHHHHHHHhhhccccHHHHHHHhcc
Q 002211 798 LAIDMSTAILTLSENGELQRIHDKWLR 824 (953)
Q Consensus 798 l~~~~n~~i~~l~e~G~~~~~~~~w~~ 824 (953)
+.+.||++|.++.++|.++++.+||+.
T Consensus 251 l~~~i~~al~~l~~~g~~~~i~~k~~~ 277 (283)
T 2yln_A 251 AVAKFSTAINELKADGTLKKLGEQFFG 277 (283)
T ss_dssp HHHHHHHHHHHHHHTTHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHHHCCcHHHHHHHHcC
Confidence 999999999999999999999999997
No 73
>2v25_A Major cell-binding factor; antigen, adhesin, aspartate, glutamate, transport, ABC transport, virulence factor, receptor; 1.49A {Campylobacter jejuni}
Probab=99.73 E-value=9.1e-18 Score=177.37 Aligned_cols=215 Identities=16% Similarity=0.293 Sum_probs=181.2
Q ss_pred CcceEEEecCcccccccEEeeCCcceEEEeeHHHHHHHHHhC---CCcccEEEeeCCCCCCCCChHHHHHHHHcCceeEE
Q 002211 484 GRQLRIGVPNRVSYRDFVFKVNGTDIVHGYCIDVFLAAVRLL---PYAVPYKFIPYGDGHKNPTYSELINQITTGVFDAA 560 (953)
Q Consensus 484 g~~lri~v~~~~~~~p~~~~~~~~~~~~G~~~dll~~la~~l---~~~~~~~~~~~~~~~~n~~~~~~i~~l~~g~~Di~ 560 (953)
.++|+|++.. +++||.+.+..++.+.|+++|+++.+++++ |++++++.. .|.+++..+.+|++|++
T Consensus 37 ~~~l~vg~~~--~~~p~~~~~~~~g~~~G~~~~l~~~~~~~~~~pg~~v~~~~~---------~~~~~~~~l~~g~~D~~ 105 (259)
T 2v25_A 37 KGQLIVGVKN--DVPHYALLDQATGEIKGFEVDVAKLLAKSILGDDKKIKLVAV---------NAKTRGPLLDNGSVDAV 105 (259)
T ss_dssp HTCEEEEECS--EETTTEEEETTTTEEESHHHHHHHHHHHHHHSCTTSEEEEEC---------CTTTHHHHHHTTSCSEE
T ss_pred CCeEEEEECC--CCCCeEEEECCCCeEEEeeHHHHHHHHHHhcCCCcceEEEEc---------CHHHHHHHHhCCCCCEE
Confidence 3579999975 789999887446899999999999999999 976555443 48999999999999999
Q ss_pred EecEEEecCccceeeccccceecceEEEEecccCCcCcceeeccCchhHHHHHHHHHHHHHHHhhhhhcccCCCCCCCCc
Q 002211 561 VGDIAIVTNRTKAVDFTQPYIESGLVVVAPVRKLNSSAWAFLRPFTPLMWAVTGVFFLVVGTVVWILEHRLNDEFRGPPR 640 (953)
Q Consensus 561 ~~~~~~t~~r~~~vdft~p~~~~~~~~~v~~~~~~~~~~~~l~PF~~~vW~~i~~~~~~~~~~~~~l~~~~~~~~~~~~~ 640 (953)
++++..+.+|.+.++|+.||.....++++++..
T Consensus 106 ~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~----------------------------------------------- 138 (259)
T 2v25_A 106 IATFTITPERKRIYNFSEPYYQDAIGLLVLKEK----------------------------------------------- 138 (259)
T ss_dssp CSSCBCCHHHHTTEEECSCSEEEEEEEEEEGGG-----------------------------------------------
T ss_pred EecCccCHHHHhcCcccccceeCceEEEEeCCC-----------------------------------------------
Confidence 887888889999999999999999999998765
Q ss_pred ccchhhHHHHHHHhhccccCCcccchhHHHHHHHHHHHHHhhhhcccceeeeeeeccccCCCCChHHhhhCCCeEEEEeC
Q 002211 641 KQIVTVLWFSFSTMFFAHRENTVSTLGRVVLIIWLFVVLIITSSYTASLTSILTVQQLSSPIKGIDTLMTSNDRVGYQVG 720 (953)
Q Consensus 641 ~~~~~~~~~~~~~l~~~~~~~~~s~~~R~l~~~w~~~~lil~~~Yta~L~s~Lt~~~~~~~I~sl~dL~~~~~~ig~~~~ 720 (953)
++++++||. +++|++..|
T Consensus 139 ------------------------------------------------------------~i~~~~dL~--g~~i~~~~g 156 (259)
T 2v25_A 139 ------------------------------------------------------------KYKSLADMK--GANIGVAQA 156 (259)
T ss_dssp ------------------------------------------------------------CCCSGGGCT--TCEEEEETT
T ss_pred ------------------------------------------------------------CCCCHHHhC--CCEEEEecC
Confidence 567899996 889999999
Q ss_pred chHHHHHHHhh---CCCccceEeCCCHHHHHHHHHcCCcEEEEccchhHHHHHhcCcceEEeCCccccCccEEEecCCCc
Q 002211 721 SFAENYLIEEL---SIPKSRLVALGSPEEYAIALENRTVAAVVDERPYIDLFLSDHCQFSVRGQEFTKSGWGFAFPRDSP 797 (953)
Q Consensus 721 s~~~~~l~~~~---~~~~~~~~~~~~~~~~~~~l~~g~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~k~sp 797 (953)
+....++.+.. +. ..+++.+.+.++.+++|.+|++|+++.+.+.+.+++.+..+ +++..+...+++++++|++|
T Consensus 157 ~~~~~~~~~~~~~~g~-~~~~~~~~~~~~~~~~l~~g~vDa~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~k~~~ 233 (259)
T 2v25_A 157 ATTKKAIGEAAKKIGI-DVKFSEFPDYPSIKAALDAKRVDAFSVDKSILLGYVDDKSE--ILPDSFEPQSYGIVTKKDDP 233 (259)
T ss_dssp CSHHHHHHHHHHHTTC-CCEEEEESSHHHHHHHHHTTSSSEEEEEHHHHTTTCCTTEE--ECSCCCSEEEECCEEETTCH
T ss_pred CchHHHHHHHHHhcCC-ceeEEEeCCHHHHHHHHHcCCCcEEEecHHHHHHHHHhCCC--ccccccccceeEEEEcCCCH
Confidence 88777665432 32 22567889999999999999999999999888887776554 55656666788999999997
Q ss_pred -chHHHHHHHHhhhccccHHHHHHHhc
Q 002211 798 -LAIDMSTAILTLSENGELQRIHDKWL 823 (953)
Q Consensus 798 -l~~~~n~~i~~l~e~G~~~~~~~~w~ 823 (953)
+.+.+|++|.++.++ ++++.+||.
T Consensus 234 ~l~~~~~~~l~~~~~~--~~~i~~k~~ 258 (259)
T 2v25_A 234 AFAKYVDDFVKEHKNE--IDALAKKWG 258 (259)
T ss_dssp HHHHHHHHHHHHTHHH--HHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHH--HHHHHHHhC
Confidence 999999999999999 999999994
No 74
>3n5l_A Binding protein component of ABC phosphonate TRAN; structural genomics, joint center for structural genomics; HET: UNL; 1.97A {Pseudomonas aeruginosa}
Probab=98.83 E-value=9.5e-09 Score=110.70 Aligned_cols=215 Identities=14% Similarity=0.119 Sum_probs=145.4
Q ss_pred CcceEEEecCcccccccEEeeCCcceEEEeeHHHHHHHHHhCCCcccEEEeeCCCCCCCCChHHHHHHHHcCceeEEEec
Q 002211 484 GRQLRIGVPNRVSYRDFVFKVNGTDIVHGYCIDVFLAAVRLLPYAVPYKFIPYGDGHKNPTYSELINQITTGVFDAAVGD 563 (953)
Q Consensus 484 g~~lri~v~~~~~~~p~~~~~~~~~~~~G~~~dll~~la~~l~~~~~~~~~~~~~~~~n~~~~~~i~~l~~g~~Di~~~~ 563 (953)
.++|+||+.. .++|+..... ..++++.+++++|.++++ +.. .+|++++..|.+|++|+++.+
T Consensus 3 ~~~l~iG~~p--~~~p~~~~~~--------~~~l~~~l~k~lG~~ve~--~~~------~~~~~~i~al~~G~vDi~~~~ 64 (310)
T 3n5l_A 3 QPVINFGIIS--TESSQNLKSI--------WEPFLKDMSQQTGYQVKA--FFA------PDYAGIIQGMRFDKVDIAWYG 64 (310)
T ss_dssp CCEEEEEECC--SSCHHHHHHH--------HHHHHHHHHHHHSSEEEE--ECC------SSHHHHHHHHHTTSCSEEECC
T ss_pred CcEEEEEEec--CCCHHHHHHH--------HHHHHHHHHHHhCCCEEE--EeC------CCHHHHHHHHHcCCCCEEEEC
Confidence 3679999986 5666654321 248999999999966544 432 569999999999999998644
Q ss_pred -EEEec--Cccceeeccccce-----ecceEEEEecccCCcCcceeeccCchhHHHHHHHHHHHHHHHhhhhhcccCCCC
Q 002211 564 -IAIVT--NRTKAVDFTQPYI-----ESGLVVVAPVRKLNSSAWAFLRPFTPLMWAVTGVFFLVVGTVVWILEHRLNDEF 635 (953)
Q Consensus 564 -~~~t~--~r~~~vdft~p~~-----~~~~~~~v~~~~~~~~~~~~l~PF~~~vW~~i~~~~~~~~~~~~~l~~~~~~~~ 635 (953)
..... +|.....|..++. ....+++|++.
T Consensus 65 ~~~~~~~~~~~~~~~~a~~~~~~g~~~~~~~lvv~~d------------------------------------------- 101 (310)
T 3n5l_A 65 NKAAMEAVDRAHGEIFAQTVAASGAPGYWSLLIANKD------------------------------------------- 101 (310)
T ss_dssp HHHHHHHHHHSCEEEEEEEEETTCCSEEEEEEEEETT-------------------------------------------
T ss_pred cHHHHHHHHhcCCeEEEEEeccCCCcceEEEEEEECC-------------------------------------------
Confidence 33322 2223333433221 01234555543
Q ss_pred CCCCcccchhhHHHHHHHhhccccCCcccchhHHHHHHHHHHHHHhhhhcccceeeeeeeccccCCCCChHHhhh--CCC
Q 002211 636 RGPPRKQIVTVLWFSFSTMFFAHRENTVSTLGRVVLIIWLFVVLIITSSYTASLTSILTVQQLSSPIKGIDTLMT--SND 713 (953)
Q Consensus 636 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~s~~~R~l~~~w~~~~lil~~~Yta~L~s~Lt~~~~~~~I~sl~dL~~--~~~ 713 (953)
.+|++++||++ .++
T Consensus 102 ----------------------------------------------------------------s~i~sl~DL~~~~kgk 117 (310)
T 3n5l_A 102 ----------------------------------------------------------------SKIDSLEDMLANAKSL 117 (310)
T ss_dssp ----------------------------------------------------------------CSCCSHHHHHHTGGGC
T ss_pred ----------------------------------------------------------------CCCCCHHHHhhhcCCC
Confidence 37999999942 367
Q ss_pred eEEEE-eCchH----HHH-HHHhhCCCc---cceEeCCCHHHHHHHHHcCCcEEEEccchhHHHHHhcC----cceEEeC
Q 002211 714 RVGYQ-VGSFA----ENY-LIEELSIPK---SRLVALGSPEEYAIALENRTVAAVVDERPYIDLFLSDH----CQFSVRG 780 (953)
Q Consensus 714 ~ig~~-~~s~~----~~~-l~~~~~~~~---~~~~~~~~~~~~~~~l~~g~~~a~~~~~~~~~~~~~~~----~~l~~~~ 780 (953)
+|++. .|+.. ..+ +.+..+... .+.+...+.++.+.+|..|++|+.+.+.+.+..+..+. .+++++.
T Consensus 118 ~ia~~~~gs~~~~l~~~~~l~~~~Gi~~~~~~~~v~~g~~~~~~~al~~G~vDa~~~~~~~~~~~~~~~~~~~~~lrvl~ 197 (310)
T 3n5l_A 118 TFGNGDPNSTSGYLVPGYYVFAKNNVDPVKAFKRTLNSSHEVNALAVANKQVDVATFNTEGMERLELTQPEKARQLKVIW 197 (310)
T ss_dssp EEEECCTTCTTTTHHHHHHTTTTTTCCHHHHSSEEEECCHHHHHHHHHTTSSSEEEEEHHHHHHHHHHCHHHHTTEEEEE
T ss_pred EEEecCCCccHhHHHHHHHHHHHcCCChHHhccccccCCHHHHHHHHHcCCccEEEecchhHHHHHHhCccchhCEEEEE
Confidence 88874 34322 121 212334332 23344567788999999999999999988888887764 3677766
Q ss_pred CccccCccEEEecCCCc--chHHHHHHHHhhhccccHHHHHHHhc
Q 002211 781 QEFTKSGWGFAFPRDSP--LAIDMSTAILTLSENGELQRIHDKWL 823 (953)
Q Consensus 781 ~~~~~~~~~~~~~k~sp--l~~~~n~~i~~l~e~G~~~~~~~~w~ 823 (953)
.......++++++|+-| +++.++.++.++.++|...++.+++-
T Consensus 198 ~s~~~p~~~i~~~~~~~~~l~~~l~~al~~~~~d~~~~~~l~~~g 242 (310)
T 3n5l_A 198 KSPLIPGDPLVWRNNLSDEQKNKLRDFFFKYGANAEQKKVLADLQ 242 (310)
T ss_dssp EEEEEECCEEEEETTSCHHHHHHHHHHHHHCCCSHHHHHHHHHTT
T ss_pred ECCCCCCCcEEEECCCCHHHHHHHHHHHHhcCCChhHHHHHHhcC
Confidence 54334467899999954 99999999999999999988888763
No 75
>3p7i_A PHND, subunit of alkylphosphonate ABC transporter; phosphonate binding protein, transport protein; 1.71A {Escherichia coli UTI89} PDB: 3qk6_A 3quj_A* 3s4u_A
Probab=98.74 E-value=4.8e-08 Score=105.46 Aligned_cols=216 Identities=15% Similarity=0.174 Sum_probs=143.5
Q ss_pred CCcceEEEecCcccccccEEeeCCcceEEEeeHHHHHHHHHhCCCcccEEEeeCCCCCCCCChHHHHHHHHcCceeEEEe
Q 002211 483 NGRQLRIGVPNRVSYRDFVFKVNGTDIVHGYCIDVFLAAVRLLPYAVPYKFIPYGDGHKNPTYSELINQITTGVFDAAVG 562 (953)
Q Consensus 483 ~g~~lri~v~~~~~~~p~~~~~~~~~~~~G~~~dll~~la~~l~~~~~~~~~~~~~~~~n~~~~~~i~~l~~g~~Di~~~ 562 (953)
+.++|+||+.+ .+.|.... ....++++.+++++|.++++ +.. .+|++++..|.+|++|+++.
T Consensus 12 ~~~~l~~Gv~p--~~~~~~~~--------~~~~~l~~~L~k~lG~~ve~--~~~------~~~~~~i~aL~~G~vDia~~ 73 (321)
T 3p7i_A 12 QEKALNFGIIS--TESQQNLK--------PQWTPFLQDMEKKLGVKVNA--FFA------PDYAGIIQGMRFNKVDIAWY 73 (321)
T ss_dssp --CCEEEEECC--SSCHHHHH--------HHHHHHHHHHHHHHTSCEEE--ECC------SSHHHHHHHHHTTSCSEEEC
T ss_pred cCCcEEEEEec--CCCHHHHH--------HHHHHHHHHHHHHHCCCEEE--Eec------CCHHHHHHHHHcCCCcEEEE
Confidence 35789999985 44443322 22247999999999966544 432 56999999999999999974
Q ss_pred -cEEEecC--ccceeeccccce-----ecceEEEEecccCCcCcceeeccCchhHHHHHHHHHHHHHHHhhhhhcccCCC
Q 002211 563 -DIAIVTN--RTKAVDFTQPYI-----ESGLVVVAPVRKLNSSAWAFLRPFTPLMWAVTGVFFLVVGTVVWILEHRLNDE 634 (953)
Q Consensus 563 -~~~~t~~--r~~~vdft~p~~-----~~~~~~~v~~~~~~~~~~~~l~PF~~~vW~~i~~~~~~~~~~~~~l~~~~~~~ 634 (953)
+..++.. |.....|..|+. ....+++|++.
T Consensus 74 ~~~~~~~~~~~~~~~~~a~~~~~~g~~~y~~~lvv~~d------------------------------------------ 111 (321)
T 3p7i_A 74 GNLSAMEAVDRANGQVFAQTVAADGSPGYWSVLIVNKD------------------------------------------ 111 (321)
T ss_dssp CHHHHHHHHHHSCEEEEEEEEETTCCSSBCEEEEEETT------------------------------------------
T ss_pred ChHHHHHHHHhcCCEEEEEEeccCCCcceEEEEEEECC------------------------------------------
Confidence 3444433 222333433221 01134555543
Q ss_pred CCCCCcccchhhHHHHHHHhhccccCCcccchhHHHHHHHHHHHHHhhhhcccceeeeeeeccccCCCCChHHhhh--CC
Q 002211 635 FRGPPRKQIVTVLWFSFSTMFFAHRENTVSTLGRVVLIIWLFVVLIITSSYTASLTSILTVQQLSSPIKGIDTLMT--SN 712 (953)
Q Consensus 635 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~s~~~R~l~~~w~~~~lil~~~Yta~L~s~Lt~~~~~~~I~sl~dL~~--~~ 712 (953)
.+|++++||++ .+
T Consensus 112 -----------------------------------------------------------------s~i~sl~DL~~~~kg 126 (321)
T 3p7i_A 112 -----------------------------------------------------------------SPINNLNDLLAKRKD 126 (321)
T ss_dssp -----------------------------------------------------------------CSCCSHHHHHHTGGG
T ss_pred -----------------------------------------------------------------CCCCCHHHHHhhcCC
Confidence 37999999932 26
Q ss_pred CeEEEE-eCchH----HHH-HHHhhCCCcc--ceEeCCCHHHHHHHHHcCCcEEEEccchhHHHHHhcC----cceEEeC
Q 002211 713 DRVGYQ-VGSFA----ENY-LIEELSIPKS--RLVALGSPEEYAIALENRTVAAVVDERPYIDLFLSDH----CQFSVRG 780 (953)
Q Consensus 713 ~~ig~~-~~s~~----~~~-l~~~~~~~~~--~~~~~~~~~~~~~~l~~g~~~a~~~~~~~~~~~~~~~----~~l~~~~ 780 (953)
++|++. .|+.. ..+ +....+.... +.+.+.+..+.+.+|.+|++|+.+.+...+..+..+. .+++++.
T Consensus 127 k~va~~~~gsts~~l~~~~~l~~~~Gi~~~~~~~v~~~~~~~a~~al~~G~vDa~~~~~~~~~~~~~~~p~~~~~lrvl~ 206 (321)
T 3p7i_A 127 LTFGNGDPNSTSGFLVPGYYVFAKNNISASDFKRTVNAGHETNALAVANKQVDVATNNTENLDKLKTSAPEKLKELKVIW 206 (321)
T ss_dssp CEEEECCTTCTTTTHHHHHHTTGGGTCCGGGSSEEEECCHHHHHHHHHTTSSSEEEEEHHHHHTHHHHCHHHHTTEEEEE
T ss_pred CEEEeCCCCccHHHHHHHHHHHHHcCCChhHceeeecCCHHHHHHHHHCCCceEEEechHHHHHHHHhCcchhccEEEEE
Confidence 688863 33322 222 2233344332 2345667889999999999999999988887777653 3677776
Q ss_pred CccccCccEEEecCCCc--chHHHHHHHHhhhccccHHHHHHHhc
Q 002211 781 QEFTKSGWGFAFPRDSP--LAIDMSTAILTLSENGELQRIHDKWL 823 (953)
Q Consensus 781 ~~~~~~~~~~~~~k~sp--l~~~~n~~i~~l~e~G~~~~~~~~w~ 823 (953)
.......++++++|+-| +++.++.++..+.++|...++.+++-
T Consensus 207 ~s~~~p~~~i~~~k~~~~~l~~~l~~aL~~~~~d~~~~~~l~~~g 251 (321)
T 3p7i_A 207 KSPLIPGDPIVWRKNLSETTKDKIYDFFMNYGKTPEEKAVLERLG 251 (321)
T ss_dssp ECSCBCCCEEEEETTSCHHHHHHHHHHHHHTTCSHHHHHHHHHHT
T ss_pred EcCCCCCCceeeeCCCCHHHHHHHHHHHHhcCCCHHHHHHHHhcC
Confidence 54444567899999954 99999999999999998888877763
No 76
>2ozz_A Hypothetical protein YHFZ; alpha-beta structure, structural genomics, PSI-2, protein structure initiative; 2.30A {Shigella flexneri 2A} SCOP: c.94.1.1
Probab=98.64 E-value=1.5e-07 Score=94.25 Aligned_cols=182 Identities=12% Similarity=0.027 Sum_probs=131.8
Q ss_pred cceEEEeeHHHHHHHHHhCCCcccEEEeeCCCCCCCCChHHHHHHHHcCceeEEEecEEEecC------ccceeeccccc
Q 002211 507 TDIVHGYCIDVFLAAVRLLPYAVPYKFIPYGDGHKNPTYSELINQITTGVFDAAVGDIAIVTN------RTKAVDFTQPY 580 (953)
Q Consensus 507 ~~~~~G~~~dll~~la~~l~~~~~~~~~~~~~~~~n~~~~~~i~~l~~g~~Di~~~~~~~t~~------r~~~vdft~p~ 580 (953)
+.++.|+.--|.+.+. |+++.+.++. .|++.+..|++|++|+++.++..+++ |...+||+.||
T Consensus 27 s~~yeGlatgl~~~f~---gi~~~i~~mr--------g~~~RI~aL~~gk~D~aI~S~~aa~e~~~~~~r~~~vdFg~~y 95 (231)
T 2ozz_A 27 TRLYEGLASGLKAQFD---GIPFYYAHMR--------GADIRVECLLNGVYDMAVVSRLAAESYLSQNNLCIALELGPHT 95 (231)
T ss_dssp SHHHHHHHHHHHHTTT---TSCEEEEECS--------CHHHHHHHHHTTSCSEEEEEHHHHHHHHHHSCEEEEEECCTTS
T ss_pred hhhhhHHHHHHHHHhc---CCcEEEEEcc--------ChHHHHHHHHcCCCCEEEEecccchhhhcccCeEEEEEcCCCc
Confidence 4567788877777773 7555555441 59999999999999999999999999 99999999999
Q ss_pred eecceEEEEecccCCcCcceeeccCchhHHHHHHHHHHHHHHHhhhhhcccCCCCCCCCcccchhhHHHHHHHhhccccC
Q 002211 581 IESGLVVVAPVRKLNSSAWAFLRPFTPLMWAVTGVFFLVVGTVVWILEHRLNDEFRGPPRKQIVTVLWFSFSTMFFAHRE 660 (953)
Q Consensus 581 ~~~~~~~~v~~~~~~~~~~~~l~PF~~~vW~~i~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 660 (953)
+.+.-.++++++..
T Consensus 96 Yv~~h~li~~~~~~------------------------------------------------------------------ 109 (231)
T 2ozz_A 96 YVGEHQLICRKGES------------------------------------------------------------------ 109 (231)
T ss_dssp SSCCEEEEEETTCG------------------------------------------------------------------
T ss_pred cccCeEEEEeCCCc------------------------------------------------------------------
Confidence 98877788876651
Q ss_pred CcccchhHHHHHHHHHHHHHhhhhcccceeeeeeeccccCCCCChHHhhhCCCeEEEEeCchHHHHHHHhhCCCccceEe
Q 002211 661 NTVSTLGRVVLIIWLFVVLIITSSYTASLTSILTVQQLSSPIKGIDTLMTSNDRVGYQVGSFAENYLIEELSIPKSRLVA 740 (953)
Q Consensus 661 ~~~s~~~R~l~~~w~~~~lil~~~Yta~L~s~Lt~~~~~~~I~sl~dL~~~~~~ig~~~~s~~~~~l~~~~~~~~~~~~~ 740 (953)
..| ++||+..||..+..+.+..- ...++..
T Consensus 110 ---------------------------------------~~i----------krVGvd~gS~dq~~lt~~~~-~g~~Ve~ 139 (231)
T 2ozz_A 110 ---------------------------------------GNV----------KRVGLDSRSADQKIMTDVFF-GDSDVER 139 (231)
T ss_dssp ---------------------------------------GGC----------CEEEECTTCHHHHHHHHHHH-TTSCCEE
T ss_pred ---------------------------------------ccc----------EEEEecCCChhHHHHHhhhc-CCCeEEE
Confidence 122 68999999998888866443 4445666
Q ss_pred C-CCHHHHHHHHHcCCcEEEEc--cchhHHHHHhcCcceEEe--CC---ccccCccEEEecCCCc-chHHHHHHHHhhhc
Q 002211 741 L-GSPEEYAIALENRTVAAVVD--ERPYIDLFLSDHCQFSVR--GQ---EFTKSGWGFAFPRDSP-LAIDMSTAILTLSE 811 (953)
Q Consensus 741 ~-~~~~~~~~~l~~g~~~a~~~--~~~~~~~~~~~~~~l~~~--~~---~~~~~~~~~~~~k~sp-l~~~~n~~i~~l~e 811 (953)
+ .+..+++..|.+|++||++. +.+... +..++... .. ........++++||++ +++.+|+.|.
T Consensus 140 ve~~y~~~i~~L~~G~IDA~Iwn~d~~~a~----~~~~l~~~~l~~~~~~~~~~eavI~v~k~n~~L~~~ln~~I~---- 211 (231)
T 2ozz_A 140 VDLSYHESLQRIVKGDVDAVIWNVVAENEL----TMLGLEATPLTDDPRFLQATEAVVLTRVDDYPMQQLLRAVVD---- 211 (231)
T ss_dssp EECCHHHHHHHHHHTSCCEEEEEC-CHHHH----HHTTEEEEECCSCHHHHHTTCEEEEEETTCHHHHHHHHHHCC----
T ss_pred EECCHHHHHHHHHcCCccEEEEcCcchhhh----cCCCcceeccccccccccCCceEEEEECCCHHHHHHHHHHhH----
Confidence 7 79999999999999999999 666554 22333322 22 2234456688999976 8888887663
Q ss_pred cccHHHHHHHhc
Q 002211 812 NGELQRIHDKWL 823 (953)
Q Consensus 812 ~G~~~~~~~~w~ 823 (953)
...+-.+.++-+
T Consensus 212 ~~~v~~~Q~~V~ 223 (231)
T 2ozz_A 212 KHALLAHQQRVV 223 (231)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 334444444443
No 77
>2h3h_A Sugar ABC transporter, periplasmic sugar-binding protein; glucose binding protein, periplasmic binding protein, GBP; HET: BGC; 1.70A {Thermotoga maritima} PDB: 2qvc_A* 3c6q_B*
Probab=98.52 E-value=6.4e-06 Score=88.84 Aligned_cols=208 Identities=12% Similarity=0.049 Sum_probs=140.5
Q ss_pred EEEeEEEecCCCchhHHHHHHHHHHHHHhcCCCCCCCcEEEEEEecCCCChHHHHHHHHHHHhcCcEEEEc-cCChhhHH
Q 002211 50 LNVGAIFSFGTVNGQVSRIAMKAAQDDINSDPRVLGGRKLSITMHDAKFNGFLSIMGALQFMETDTLAIVG-PQSAVMAH 128 (953)
Q Consensus 50 i~IG~l~~~~~~~g~~~~~a~~lAve~iN~~g~il~g~~l~l~~~D~~~~~~~a~~~a~~li~~~v~aiiG-p~~S~~a~ 128 (953)
++||++.|....+......+++.+.++. |+++.+.. .+..++....+....++.+++.+||. |..+....
T Consensus 2 ~~Ig~i~~~~~~~~~~~~~gi~~~~~~~--------g~~~~~~~-~~~~~~~~~~~~i~~l~~~~vdgiIi~~~~~~~~~ 72 (313)
T 2h3h_A 2 LTIGVIGKSVHPYWSQVEQGVKAAGKAL--------GVDTKFFV-PQKEDINAQLQMLESFIAEGVNGIAIAPSDPTAVI 72 (313)
T ss_dssp CEEEEECSCSSHHHHHHHHHHHHHHHHH--------TCEEEEEC-CSSSCHHHHHHHHHHHHHTTCSEEEECCSSTTTTH
T ss_pred eEEEEEeCCCcHHHHHHHHHHHHHHHHc--------CCEEEEEC-CCCCCHHHHHHHHHHHHHcCCCEEEEeCCChHHHH
Confidence 5899999864335566778888888774 46665432 24678888888888899889988874 54444333
Q ss_pred HHHHhhhhCCCcEEEeecCCCCCCCCCCCcEEEccCChHHHHHHHHHHHHHc--CCcEEEEEEec--CccccchHHHHHH
Q 002211 129 VLSHLANELQVPLLSFTALDPTLSPLQYPFFVQTAPNDLYLMSAIAEMVSYF--GWGEVIAIFND--DDQGRNGVTALGD 204 (953)
Q Consensus 129 av~~v~~~~~vP~Is~~at~~~ls~~~~p~~fr~~p~d~~~~~ai~~~l~~~--~w~~vaii~~d--~~~g~~~~~~l~~ 204 (953)
.....+.+.++|+|......+. .+.+..+..++...+..+++++... |.+++++|..+ ........+.|.+
T Consensus 73 ~~~~~~~~~~iPvV~~~~~~~~-----~~~~~~V~~d~~~~g~~a~~~L~~~~~G~~~I~~i~~~~~~~~~~~R~~gf~~ 147 (313)
T 2h3h_A 73 PTIKKALEMGIPVVTLDTDSPD-----SGRYVYIGTDNYQAGYTAGLIMKELLGGKGKVVIGTGSLTAMNSLQRIQGFKD 147 (313)
T ss_dssp HHHHHHHHTTCCEEEESSCCTT-----SCCSCEEECCHHHHHHHHHHHHHHHHTSCSEEEEEESCSSCHHHHHHHHHHHH
T ss_pred HHHHHHHHCCCeEEEeCCCCCC-----cceeEEECcCHHHHHHHHHHHHHHHcCCCCEEEEEECCCCCccHHHHHHHHHH
Confidence 4455566789999987554321 1223345577777888889998777 99999999864 3445667889999
Q ss_pred HHHhcCcEEEEEEecCCCCCCChHHHHHHHHHHhcC--CceEEEEEcchhhHHHHHHHHHHcCCCCCceEEEEeC
Q 002211 205 KLAEIRCKISYKSALPPDQSVTETDVRNELVKVRMM--EARVIVVHGYSRTGLMVFDVAQRLGMMDSGYVWIATT 277 (953)
Q Consensus 205 ~l~~~g~~v~~~~~~~~~~~~~~~d~~~~l~~i~~~--~~~vii~~~~~~~~~~~~~~a~~~g~~~~~~~wi~~~ 277 (953)
++++.|+++........ +.++....+.++.+. ++++|+.. +...+..+++++++.|. ..+...++.|
T Consensus 148 ~l~~~g~~~~~~~~~~~----~~~~~~~~~~~~l~~~~~~~ai~~~-~d~~a~g~~~al~~~G~-p~dv~vvg~d 216 (313)
T 2h3h_A 148 AIKDSEIEIVDILNDEE----DGARAVSLAEAALNAHPDLDAFFGV-YAYNGPAQALVVKNAGK-VGKVKIVCFD 216 (313)
T ss_dssp HHTTSSCEEEEEEECSS----CHHHHHHHHHHHHHHCTTCCEEEEC-STTHHHHHHHHHHHTTC-TTTSEEEEEC
T ss_pred HhcCCCCEEEEeecCCC----CHHHHHHHHHHHHHHCcCceEEEEc-CCCccHHHHHHHHHcCC-CCCeEEEEeC
Confidence 99999998765332222 245555566666554 45777654 44567789999999994 2334444444
No 78
>3ksm_A ABC-type sugar transport system, periplasmic COMP; periplasmic component, PSI- 11023L, structural genomics, protein structure initiative; HET: BDR; 1.90A {Hahella chejuensis}
Probab=98.51 E-value=4.6e-06 Score=88.02 Aligned_cols=209 Identities=10% Similarity=-0.028 Sum_probs=144.7
Q ss_pred EEEeEEEecC-CCchhHHHHHHHHHHHHHhcCCCCCCCcEEEEEEecCCCChHHHHHHHHHHHhcC-cEEEEccC-Chhh
Q 002211 50 LNVGAIFSFG-TVNGQVSRIAMKAAQDDINSDPRVLGGRKLSITMHDAKFNGFLSIMGALQFMETD-TLAIVGPQ-SAVM 126 (953)
Q Consensus 50 i~IG~l~~~~-~~~g~~~~~a~~lAve~iN~~g~il~g~~l~l~~~D~~~~~~~a~~~a~~li~~~-v~aiiGp~-~S~~ 126 (953)
++||++.|-. ..+......+++-+.++. |+++.+...|+..++....+....+++++ +.+||-.. .+..
T Consensus 1 ~~Ig~i~~~~~~~~~~~~~~gi~~~~~~~--------g~~~~~~~~~~~~~~~~~~~~i~~l~~~~~vdgii~~~~~~~~ 72 (276)
T 3ksm_A 1 PKLLLVLKGDSNAYWRQVYLGAQKAADEA--------GVTLLHRSTKDDGDIAGQIQILSYHLSQAPPDALILAPNSAED 72 (276)
T ss_dssp CEEEEECSCSSSTHHHHHHHHHHHHHHHH--------TCEEEECCCSSTTCHHHHHHHHHHHHHHSCCSEEEECCSSTTT
T ss_pred CeEEEEeCCCCChHHHHHHHHHHHHHHHc--------CCEEEEECCCCCCCHHHHHHHHHHHHHhCCCCEEEEeCCCHHH
Confidence 5899999853 555667778888888774 57777666567788888888888999988 99988543 3344
Q ss_pred HHHHHHhhhhCCCcEEEeecCCCCCCCCCCCcEEEccCChHHHHHHHHHHHHHc----CCcEEEEEEec--CccccchHH
Q 002211 127 AHVLSHLANELQVPLLSFTALDPTLSPLQYPFFVQTAPNDLYLMSAIAEMVSYF----GWGEVIAIFND--DDQGRNGVT 200 (953)
Q Consensus 127 a~av~~v~~~~~vP~Is~~at~~~ls~~~~p~~fr~~p~d~~~~~ai~~~l~~~----~w~~vaii~~d--~~~g~~~~~ 200 (953)
.......+.+.++|+|......+ + .+++..+..++...+..+++++... |-++++++..+ ........+
T Consensus 73 ~~~~~~~~~~~~ipvV~~~~~~~---~--~~~~~~V~~d~~~~g~~~~~~l~~~~~~~G~~~i~~i~~~~~~~~~~~R~~ 147 (276)
T 3ksm_A 73 LTPSVAQYRARNIPVLVVDSDLA---G--DAHQGLVATDNYAAGQLAARALLATLDLSKERNIALLRLRAGNASTDQREQ 147 (276)
T ss_dssp THHHHHHHHHTTCCEEEESSCCS---S--SCSSEEEECCHHHHHHHHHHHHHHHSCTTSCEEEEECBCCTTCHHHHHHHH
T ss_pred HHHHHHHHHHCCCcEEEEecCCC---C--CCcceEEccCHHHHHHHHHHHHHHhcCcCCCceEEEEEcCCCchhHHHHHH
Confidence 45556677888999998754432 1 1223445677788888899998887 89999999854 334566788
Q ss_pred HHHHHHHhc-CcEEEEEEecCCCCCCChHHHHHHHHHHhcC--CceEEEEEcchhhHHHHHHHHHHcCCCCCceEEEEeC
Q 002211 201 ALGDKLAEI-RCKISYKSALPPDQSVTETDVRNELVKVRMM--EARVIVVHGYSRTGLMVFDVAQRLGMMDSGYVWIATT 277 (953)
Q Consensus 201 ~l~~~l~~~-g~~v~~~~~~~~~~~~~~~d~~~~l~~i~~~--~~~vii~~~~~~~~~~~~~~a~~~g~~~~~~~wi~~~ 277 (953)
.|.+++++. |+++... .... .+..+....+.++.+. ++++|+. .+...+..+++++++.|+ ..+...++.|
T Consensus 148 gf~~~l~~~~~~~~~~~--~~~~--~~~~~~~~~~~~~l~~~~~~~ai~~-~~d~~a~g~~~al~~~g~-p~di~vig~d 221 (276)
T 3ksm_A 148 GFLDVLRKHDKIRIIAA--PYAG--DDRGAARSEMLRLLKETPTIDGLFT-PNESTTIGALVAIRQSGM-SKQFGFIGFD 221 (276)
T ss_dssp HHHHHHTTCTTEEEEEC--CBCC--SSHHHHHHHHHHHHHHCSCCCEEEC-CSHHHHHHHHHHHHHTTC-TTSSEEEEES
T ss_pred HHHHHHHhCCCcEEEEE--ecCC--CcHHHHHHHHHHHHHhCCCceEEEE-CCchhhhHHHHHHHHcCC-CCCeEEEEeC
Confidence 999999998 8887632 2222 2345555566666544 4566554 445567789999999997 3344444444
No 79
>2rjo_A Twin-arginine translocation pathway signal protei; PSI-2, NYSGXRC, twin arginine translocation pathway signal P structural genomics; HET: GAL; 2.05A {Burkholderia phytofirmans}
Probab=98.46 E-value=1.3e-05 Score=87.28 Aligned_cols=205 Identities=9% Similarity=0.020 Sum_probs=138.0
Q ss_pred ceEEEeEEEec-CCCchhHHHHHHHHHHHHHhcCCCCCCCcEEEEEEecCCCChHHHHHHHHHHHhcC--cEEEEccCC-
Q 002211 48 EVLNVGAIFSF-GTVNGQVSRIAMKAAQDDINSDPRVLGGRKLSITMHDAKFNGFLSIMGALQFMETD--TLAIVGPQS- 123 (953)
Q Consensus 48 ~~i~IG~l~~~-~~~~g~~~~~a~~lAve~iN~~g~il~g~~l~l~~~D~~~~~~~a~~~a~~li~~~--v~aiiGp~~- 123 (953)
...+||++.|. +..+-.....+++-+.++. |+++. +.++..++.........+++++ +.+||....
T Consensus 4 ~s~~Igvi~~~~~~~~~~~~~~gi~~~a~~~--------g~~l~--~~~~~~~~~~~~~~i~~l~~~~~~vdgiIi~~~~ 73 (332)
T 2rjo_A 4 GQTTLACSFRSLTNPYYTAFNKGAQSFAKSV--------GLPYV--PLTTEGSSEKGIADIRALLQKTGGNLVLNVDPND 73 (332)
T ss_dssp CCCEEEEEESCTTSHHHHHHHHHHHHHHHHH--------TCCEE--EEECTTCHHHHHHHHHHHHHHTTTCEEEEECCSS
T ss_pred CccEEEEEecCCCcHHHHHHHHHHHHHHHHc--------CCEEE--EecCCCCHHHHHHHHHHHHHCCCCCCEEEEeCCC
Confidence 35689999985 3444456667777777663 45544 4577778877777788888888 999886433
Q ss_pred hhhHHHHHHhhhhCCCcEEEeecCCCCCCCCCC--CcEEEccCChHHHHHHHHHHHHH--cCCcEEEEEEec--Cccccc
Q 002211 124 AVMAHVLSHLANELQVPLLSFTALDPTLSPLQY--PFFVQTAPNDLYLMSAIAEMVSY--FGWGEVIAIFND--DDQGRN 197 (953)
Q Consensus 124 S~~a~av~~v~~~~~vP~Is~~at~~~ls~~~~--p~~fr~~p~d~~~~~ai~~~l~~--~~w~~vaii~~d--~~~g~~ 197 (953)
..........+...++|+|......+......+ +.+..+..++...+..+++++.. .|.+++++|... ......
T Consensus 74 ~~~~~~~~~~~~~~~iPvV~~~~~~~~~~~~~~~~~~~~~V~~D~~~~g~~a~~~L~~~~~G~~~I~~i~g~~~~~~~~~ 153 (332)
T 2rjo_A 74 SADARVIVEACSKAGAYVTTIWNKPKDLHPWDYNPNYVAHLSYDGVAYGEETATQLFKSMGGKGGVVALGGIFSNVPAIE 153 (332)
T ss_dssp HHHHHHHHHHHHHHTCEEEEESCCCTTCCGGGGTTTEEEEEECCHHHHHHHHHHHHHHHTTTCEEEEEEECCTTCHHHHH
T ss_pred HHHHHHHHHHHHHCCCeEEEECCCCCcccchhcccceeEEEccChHHHHHHHHHHHHHHcCCCCeEEEEECCCCCccHHH
Confidence 332234445566679999987654332111111 35666778888888889999877 699999999854 334566
Q ss_pred hHHHHHHHHHhc-CcEEEEEEecCCCCCCChHHHHHHHHHHhcC---CceEEEEEcchhhHHHHHHHHHHcCCC
Q 002211 198 GVTALGDKLAEI-RCKISYKSALPPDQSVTETDVRNELVKVRMM---EARVIVVHGYSRTGLMVFDVAQRLGMM 267 (953)
Q Consensus 198 ~~~~l~~~l~~~-g~~v~~~~~~~~~~~~~~~d~~~~l~~i~~~---~~~vii~~~~~~~~~~~~~~a~~~g~~ 267 (953)
..+.|.+++++. |+++....... .+..+....+.++.+. ++++|+. .+...+..+++++++.|+.
T Consensus 154 R~~Gf~~al~~~pgi~~~~~~~~~----~~~~~~~~~~~~ll~~~~~~~~aI~~-~nd~~A~g~~~al~~~G~~ 222 (332)
T 2rjo_A 154 RKAGLDAALKKFPGIQLLDFQVAD----WNSQKAFPIMQAWMTRFNSKIKGVWA-ANDDMALGAIEALRAEGLA 222 (332)
T ss_dssp HHHHHHHHHHTCTTEEEEEEEECT----TCHHHHHHHHHHHHHHHGGGEEEEEE-SSHHHHHHHHHHHHHTTCB
T ss_pred HHHHHHHHHHhCCCcEEEeeccCC----CCHHHHHHHHHHHHHhcCCCeeEEEE-CCCchHHHHHHHHHHcCCC
Confidence 788999999999 98876432222 1244555556665444 4666654 4556688899999999986
No 80
>3brq_A HTH-type transcriptional regulator ASCG; transcriptional repressor structure escherichia coli, struct genomics, PSI-2; HET: FRU; 2.00A {Escherichia coli}
Probab=98.44 E-value=5.4e-06 Score=88.54 Aligned_cols=211 Identities=9% Similarity=-0.021 Sum_probs=138.7
Q ss_pred CceEEEeEEEec---CCCchhHHHHHHHHHHHHHhcCCCCCCCcEEEEEEecCCCChHHHHHHHHHHHhcCcEEEEccCC
Q 002211 47 PEVLNVGAIFSF---GTVNGQVSRIAMKAAQDDINSDPRVLGGRKLSITMHDAKFNGFLSIMGALQFMETDTLAIVGPQS 123 (953)
Q Consensus 47 ~~~i~IG~l~~~---~~~~g~~~~~a~~lAve~iN~~g~il~g~~l~l~~~D~~~~~~~a~~~a~~li~~~v~aiiGp~~ 123 (953)
....+||++.|. +..+......+++.+.++. |+++ .+.++..++....+....++++++.+||....
T Consensus 17 ~~~~~Ig~i~~~~~~~~~~~~~~~~gi~~~~~~~--------g~~~--~~~~~~~~~~~~~~~~~~l~~~~vdgii~~~~ 86 (296)
T 3brq_A 17 KSTQTLGLVVTNTLYHGIYFSELLFHAARMAEEK--------GRQL--LLADGKHSAEEERQAIQYLLDLRCDAIMIYPR 86 (296)
T ss_dssp --CCEEEEEECGGGCC--CHHHHHHHHHHHHHHT--------TCEE--EEECCTTSHHHHHHHHHHHHHTTCSEEEEECS
T ss_pred CCCceEEEEeCCcccCCchHHHHHHHHHHHHHHC--------CCEE--EEEeCCCCHHHHHHHHHHHHhcCCCEEEEecC
Confidence 456889999996 4566677788888887762 5555 45677788887777888888889988886433
Q ss_pred hhhHHHHHHhhhh-CCCcEEEeecCCCCCCCCCCCcEEEccCChHHHHHHHHHHHHHcCCcEEEEEEecC--ccccchHH
Q 002211 124 AVMAHVLSHLANE-LQVPLLSFTALDPTLSPLQYPFFVQTAPNDLYLMSAIAEMVSYFGWGEVIAIFNDD--DQGRNGVT 200 (953)
Q Consensus 124 S~~a~av~~v~~~-~~vP~Is~~at~~~ls~~~~p~~fr~~p~d~~~~~ai~~~l~~~~w~~vaii~~d~--~~g~~~~~ 200 (953)
+..... ...+.+ .++|+|......+ + +.+..+..++...+..+++++...|.+++++|..+. ..+....+
T Consensus 87 ~~~~~~-~~~l~~~~~iPvV~~~~~~~---~---~~~~~V~~d~~~~~~~a~~~l~~~G~~~I~~i~~~~~~~~~~~R~~ 159 (296)
T 3brq_A 87 FLSVDE-IDDIIDAHSQPIMVLNRRLR---K---NSSHSVWCDHKQTSFNAVAELINAGHQEIAFLTGSMDSPTSIERLA 159 (296)
T ss_dssp SSCHHH-HHHHHHTCSSCEEEESCCCS---S---SGGGEECCCHHHHHHHHHHHHHHTTCCSEEEECCCTTCHHHHHHHH
T ss_pred CCChHH-HHHHHhcCCCCEEEEccccC---C---CCCCEEEEchHHHHHHHHHHHHHCCCceEEEEcCCCCCccHHHHHH
Confidence 222222 344555 8999998754322 1 223345566777778888998888999999998653 34566788
Q ss_pred HHHHHHHhcCcEEEEEEecCCCCCCChHHHHHHHHHHhc--CCceEEEEEcchhhHHHHHHHHHHcCCCCCce-EEEEeC
Q 002211 201 ALGDKLAEIRCKISYKSALPPDQSVTETDVRNELVKVRM--MEARVIVVHGYSRTGLMVFDVAQRLGMMDSGY-VWIATT 277 (953)
Q Consensus 201 ~l~~~l~~~g~~v~~~~~~~~~~~~~~~d~~~~l~~i~~--~~~~vii~~~~~~~~~~~~~~a~~~g~~~~~~-~wi~~~ 277 (953)
.|.+++++.|+.+.....+..+ .+..+....+.++.+ .++++|+.. +...+..+++++++.|+..++- ..++.|
T Consensus 160 gf~~~l~~~g~~~~~~~~~~~~--~~~~~~~~~~~~~l~~~~~~~ai~~~-~d~~a~g~~~al~~~g~~vP~di~vvg~d 236 (296)
T 3brq_A 160 GYKDALAQHGIALNEKLIANGK--WTPASGAEGVEMLLERGAKFSALVAS-NDDMAIGAMKALHERGVAVPEQVSVIGFD 236 (296)
T ss_dssp HHHHHHHTTTCCCCGGGEECCC--SSHHHHHHHHHHHHTC--CCSEEEES-SHHHHHHHHHHHHHHTCCTTTTCEEEEES
T ss_pred HHHHHHHHcCCCCChhhEEeCC--CChhHHHHHHHHHHhCCCCCCEEEEC-ChHHHHHHHHHHHHcCCCCCCceEEEeec
Confidence 9999999998765322112222 224444555666654 357877654 5566788899999999875443 344443
No 81
>3d02_A Putative LACI-type transcriptional regulator; periplasmic sugar-binding protein, structura genomics; HET: MSE GOL; 1.30A {Klebsiella pneumoniae subsp}
Probab=98.44 E-value=1.9e-05 Score=84.60 Aligned_cols=211 Identities=9% Similarity=-0.050 Sum_probs=138.5
Q ss_pred ceEEEeEEEecC-CCchhHHHHHHHHHHHHHhcCCCCCCCcEEEEEEecCCCChHHHHHHHHHHHhcCcEEEE-ccCChh
Q 002211 48 EVLNVGAIFSFG-TVNGQVSRIAMKAAQDDINSDPRVLGGRKLSITMHDAKFNGFLSIMGALQFMETDTLAIV-GPQSAV 125 (953)
Q Consensus 48 ~~i~IG~l~~~~-~~~g~~~~~a~~lAve~iN~~g~il~g~~l~l~~~D~~~~~~~a~~~a~~li~~~v~aii-Gp~~S~ 125 (953)
+..+||++.|.. ..+......+++.+.++. |+++.+ +.++..++.........++.+++.+|| .|..+.
T Consensus 3 ~~~~Ig~i~~~~~~~~~~~~~~g~~~~~~~~--------g~~~~~-~~~~~~~~~~~~~~~~~l~~~~vdgiii~~~~~~ 73 (303)
T 3d02_A 3 AEKTVVNISKVDGMPWFNRMGEGVVQAGKEF--------NLNASQ-VGPSSTDAPQQVKIIEDLIARKVDAITIVPNDAN 73 (303)
T ss_dssp -CEEEEEECSCSSCHHHHHHHHHHHHHHHHT--------TEEEEE-ECCSSSCHHHHHHHHHHHHHTTCSEEEECCSCHH
T ss_pred CceEEEEEeccCCChHHHHHHHHHHHHHHHc--------CCEEEE-ECCCCCCHHHHHHHHHHHHHcCCCEEEEecCChH
Confidence 468899999864 456667788888888874 444432 245677888888888888888998876 555554
Q ss_pred hHHHHHHhhhhCCCcEEEeecCCCCCCCCCCCcEEEccCChHHHHHHHHHHHHH-cCCc-EEEEEEec--CccccchHHH
Q 002211 126 MAHVLSHLANELQVPLLSFTALDPTLSPLQYPFFVQTAPNDLYLMSAIAEMVSY-FGWG-EVIAIFND--DDQGRNGVTA 201 (953)
Q Consensus 126 ~a~av~~v~~~~~vP~Is~~at~~~ls~~~~p~~fr~~p~d~~~~~ai~~~l~~-~~w~-~vaii~~d--~~~g~~~~~~ 201 (953)
........+...++|+|...... .. .+.+..+..++...+..+++++.. .|.+ +++++... ........+.
T Consensus 74 ~~~~~~~~~~~~~ipvV~~~~~~--~~---~~~~~~v~~d~~~~g~~a~~~l~~~~g~~~~i~~i~g~~~~~~~~~R~~g 148 (303)
T 3d02_A 74 VLEPVFKKARDAGIVVLTNESPG--QP---SANWDVEIIDNEKFAAEYVEHMAKRMGGKGGYVIYVGSLTVPQHNLWADL 148 (303)
T ss_dssp HHHHHHHHHHHTTCEEEEESCTT--CT---TCSEEEESSCHHHHHHHHHHHHHHHTTTCEEEEEECSCSSCHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCeEEEEecCC--CC---CCceEEEecCHHHHHHHHHHHHHHHhCcCceEEEEecCCCCccHHHHHHH
Confidence 44445566777899999875431 11 133455667777888888998777 8887 99988743 3334566788
Q ss_pred HHHHHHhcC--cEEEEEEecCCCCCCChHHHHHHHHHHhcCC--ceEEEEEcchhhHHHHHHHHHHcCCCCCceEEEEeC
Q 002211 202 LGDKLAEIR--CKISYKSALPPDQSVTETDVRNELVKVRMME--ARVIVVHGYSRTGLMVFDVAQRLGMMDSGYVWIATT 277 (953)
Q Consensus 202 l~~~l~~~g--~~v~~~~~~~~~~~~~~~d~~~~l~~i~~~~--~~vii~~~~~~~~~~~~~~a~~~g~~~~~~~wi~~~ 277 (953)
|.+.+++.+ +++... .+... .+..+....+.++.+.. +++|+. .+...+..+++++++.|+. .+...++.+
T Consensus 149 f~~~l~~~~~~~~~~~~-~~~~~--~~~~~~~~~~~~~l~~~~~~~ai~~-~~d~~a~g~~~al~~~g~~-~dv~vig~d 223 (303)
T 3d02_A 149 LVKYQKEHYPDMHEVTR-RMPVA--ESVDDSRRTTLDLMKTYPDLKAVVS-FGSNGPIGAGRAVKEKRAK-NKVAVYGMM 223 (303)
T ss_dssp HHHHHHHHCTTEEESSS-CBSCT--TCHHHHHHHHHHHHHHCTTEEEEEE-SSTTHHHHHHHHHHHTTCT-TTCEEEECC
T ss_pred HHHHHHhhCCCCEEEEe-ecCCC--CCHHHHHHHHHHHHHhCCCCCEEEE-eCCcchhHHHHHHHhcCCC-CCeEEEEeC
Confidence 999998765 444321 11212 23455556666665544 555554 4445677899999999986 333444433
No 82
>2qh8_A Uncharacterized protein; conserved domain protein, structural genomics, PSI-2, MCSG, BIG_563.1, protein structure initiative; HET: HIS; 2.20A {Vibrio cholerae o1 biovar eltor str} PDB: 3lkv_A*
Probab=98.43 E-value=8.5e-06 Score=87.39 Aligned_cols=202 Identities=15% Similarity=0.119 Sum_probs=132.9
Q ss_pred CceEEEeEEEecCCCchhHHHHHHHHHHHHHhcCCCCCCCcEEEEEEecCCCChHHHHHHHHHHHhcCcEEEEccCChhh
Q 002211 47 PEVLNVGAIFSFGTVNGQVSRIAMKAAQDDINSDPRVLGGRKLSITMHDAKFNGFLSIMGALQFMETDTLAIVGPQSAVM 126 (953)
Q Consensus 47 ~~~i~IG~l~~~~~~~g~~~~~a~~lAve~iN~~g~il~g~~l~l~~~D~~~~~~~a~~~a~~li~~~v~aiiGp~~S~~ 126 (953)
+.+.+||++.+++.++-.....|++ +.+++.|.+. |+++.+.+.|++.++.+......+|.+++|++||.... ..
T Consensus 6 ~~t~~IGvi~~~~~p~~~~~~~gi~---~~l~~~Gy~~-g~~v~l~~~~~~~~~~~~~~~~~~l~~~~vDgII~~~~-~~ 80 (302)
T 2qh8_A 6 AKTAKVAVSQIVEHPALDATRQGLL---DGLKAKGYEE-GKNLEFDYKTAQGNPAIAVQIARQFVGENPDVLVGIAT-PT 80 (302)
T ss_dssp -CCEEEEEEESSCCHHHHHHHHHHH---HHHHHTTCCB-TTTEEEEEEECTTCHHHHHHHHHHHHHTCCSEEEEESH-HH
T ss_pred cCCcEEEEEEeccChhHHHHHHHHH---HHHHHcCCCC-CCceEEEEecCCCCHHHHHHHHHHHHhCCCCEEEECCh-HH
Confidence 4678999985445544445555555 4455566553 78999999999999999999999999889999887543 22
Q ss_pred HHHHHHhhhhCCCcEEEeecCCCCCCC------CCCCcEEEccCChHHHHHHHHHHHHHc--CCcEEEEEEecCc-cccc
Q 002211 127 AHVLSHLANELQVPLLSFTALDPTLSP------LQYPFFVQTAPNDLYLMSAIAEMVSYF--GWGEVIAIFNDDD-QGRN 197 (953)
Q Consensus 127 a~av~~v~~~~~vP~Is~~at~~~ls~------~~~p~~fr~~p~d~~~~~ai~~~l~~~--~w~~vaii~~d~~-~g~~ 197 (953)
...+.. ...++|+|..+..+|.... ...+++..+. +...+...++++.+. |.+++++|+.... .+..
T Consensus 81 ~~~~~~--~~~~iPvV~~~~~~~~~~~~v~~~~~~~~~~~gv~--~~~~~~~~~~~l~~~~Pg~~~I~~i~~~~~~~~~~ 156 (302)
T 2qh8_A 81 AQALVS--ATKTIPIVFTAVTDPVGAKLVKQLEQPGKNVTGLS--DLSPVEQHVELIKEILPNVKSIGVVYNPGEANAVS 156 (302)
T ss_dssp HHHHHH--HCSSSCEEEEEESCTTTTTSCSCSSSCCSSEEEEE--CCCCHHHHHHHHHHHSTTCCEEEEEECTTCHHHHH
T ss_pred HHHHHh--cCCCcCEEEEecCCHhhcCccccccCCCCCEEEEE--CCcCHHHHHHHHHHhCCCCcEEEEEecCCCcchHH
Confidence 333333 2679999987765553211 1123444443 222345667887777 9999999996543 3566
Q ss_pred hHHHHHHHHHhcCcEEEEEEecCCCCCCChHHHHHHHHHHhcCCceEEEEEcchhhHHHHHHHHHHcC
Q 002211 198 GVTALGDKLAEIRCKISYKSALPPDQSVTETDVRNELVKVRMMEARVIVVHGYSRTGLMVFDVAQRLG 265 (953)
Q Consensus 198 ~~~~l~~~l~~~g~~v~~~~~~~~~~~~~~~d~~~~l~~i~~~~~~vii~~~~~~~~~~~~~~a~~~g 265 (953)
..+.+++++++.|+++...... . .++....++++.. ++++|++..+. .+...++.+.+.|
T Consensus 157 r~~g~~~al~~~gi~~~~~~~~--~----~~~~~~~~~~l~~-~~dai~~~~D~-~a~g~~~~l~~~~ 216 (302)
T 2qh8_A 157 LMELLKLSAAKHGIKLVEATAL--K----SADVQSATQAIAE-KSDVIYALIDN-TVASAIEGMIVAA 216 (302)
T ss_dssp HHHHHHHHHHHTTCEEEEEECS--S----GGGHHHHHHHHGG-GCSEEEECSCH-HHHTTHHHHHHHH
T ss_pred HHHHHHHHHHHcCCEEEEEecC--C----hHHHHHHHHHHhc-cCCEEEECCcH-hHHHHHHHHHHHH
Confidence 7889999999999987654322 2 4567777888864 78988876543 2333344444433
No 83
>3brs_A Periplasmic binding protein/LACI transcriptional; structural genomics, protein structure initiative; 2.00A {Clostridium phytofermentans}
Probab=98.40 E-value=1.5e-05 Score=84.77 Aligned_cols=210 Identities=9% Similarity=-0.064 Sum_probs=139.4
Q ss_pred eEEEeEEEecC---CCchhHHHHHHHHHHHHHhcCCCCCCCcEEEEEEecCCCChHHHHHHHHHHHhcCcEEEEccCC-h
Q 002211 49 VLNVGAIFSFG---TVNGQVSRIAMKAAQDDINSDPRVLGGRKLSITMHDAKFNGFLSIMGALQFMETDTLAIVGPQS-A 124 (953)
Q Consensus 49 ~i~IG~l~~~~---~~~g~~~~~a~~lAve~iN~~g~il~g~~l~l~~~D~~~~~~~a~~~a~~li~~~v~aiiGp~~-S 124 (953)
..+||++.|.. ..+......+++.++++. |+++.+...|+..++....+....++++++.+||.... .
T Consensus 5 ~~~Ig~v~~~~~~~~~~~~~~~~gi~~~a~~~--------g~~~~~~~~~~~~~~~~~~~~~~~l~~~~vdgii~~~~~~ 76 (289)
T 3brs_A 5 QYYMICIPKVLDDSSDFWSVLVEGAQMAAKEY--------EIKLEFMAPEKEEDYLVQNELIEEAIKRKPDVILLAAADY 76 (289)
T ss_dssp CCEEEEECSCCCSSSHHHHHHHHHHHHHHHHH--------TCEEEECCCSSTTCHHHHHHHHHHHHHTCCSEEEECCSCT
T ss_pred CcEEEEEeCCCCCCchHHHHHHHHHHHHHHHc--------CCEEEEecCCCCCCHHHHHHHHHHHHHhCCCEEEEeCCCh
Confidence 46799999853 455566778888877774 56676654454678887778888888889998886433 3
Q ss_pred hhHHHHHHhhhhCCCcEEEeecCCCCCCCCCCCcEEEccCChHHHHHHHHHHHHHc-C-CcEEEEEEec--CccccchHH
Q 002211 125 VMAHVLSHLANELQVPLLSFTALDPTLSPLQYPFFVQTAPNDLYLMSAIAEMVSYF-G-WGEVIAIFND--DDQGRNGVT 200 (953)
Q Consensus 125 ~~a~av~~v~~~~~vP~Is~~at~~~ls~~~~p~~fr~~p~d~~~~~ai~~~l~~~-~-w~~vaii~~d--~~~g~~~~~ 200 (953)
.........+.+.++|+|......+. .+.+..+..++...+..+++++... | -++++++..+ ........+
T Consensus 77 ~~~~~~~~~~~~~~iPvV~~~~~~~~-----~~~~~~V~~D~~~~g~~~~~~L~~~~G~~~~i~~i~~~~~~~~~~~R~~ 151 (289)
T 3brs_A 77 EKTYDAAKEIKDAGIKLIVIDSGMKQ-----DIADITVATDNIQAGIRIGAVTKNLVRKSGKIGVISFVKNSKTAMDREE 151 (289)
T ss_dssp TTTHHHHTTTGGGTCEEEEESSCCSS-----CCCSEEEECCHHHHHHHHHHHHHHHTSSSCEEEEEESCTTSHHHHHHHH
T ss_pred HHhHHHHHHHHHCCCcEEEECCCCCC-----CcceEEEeeChHHHHHHHHHHHHHHcCCCceEEEEECCCCCccHHHHHH
Confidence 32223445566689999987543321 1234556777888888899997775 6 9999999854 334556778
Q ss_pred HHHHHHHhcCcEEEEEEecCCCCCCChHHHHHHHHHHhcC--CceEEEEEcchhhHHHHHHHHHHcCCCCCceEEEEeC
Q 002211 201 ALGDKLAEIRCKISYKSALPPDQSVTETDVRNELVKVRMM--EARVIVVHGYSRTGLMVFDVAQRLGMMDSGYVWIATT 277 (953)
Q Consensus 201 ~l~~~l~~~g~~v~~~~~~~~~~~~~~~d~~~~l~~i~~~--~~~vii~~~~~~~~~~~~~~a~~~g~~~~~~~wi~~~ 277 (953)
.|.+++++.|..+....... .+..+....+.++.+. ++++|+. .+...+..+++++++.|+. .+...++.|
T Consensus 152 gf~~~l~~~g~~~~~~~~~~----~~~~~~~~~~~~~l~~~~~~~ai~~-~~d~~a~g~~~al~~~G~~-~di~vvg~d 224 (289)
T 3brs_A 152 GLKIGLSDDSNKIEAIYYCD----SNYDKAYDGTVELLTKYPDISVMVG-LNQYSATGAARAIKDMSLE-AKVKLVCID 224 (289)
T ss_dssp HHHHHHGGGGGGEEEEEECT----TCHHHHHHHHHHHHHHCTTEEEEEE-SSHHHHHHHHHHHHHTTCT-TTSEEEEEE
T ss_pred HHHHHHHhCCCcEEeeecCC----CCHHHHHHHHHHHHHhCCCceEEEE-CCCcchHHHHHHHHhcCCC-CCEEEEEEC
Confidence 89999999887644322112 2245555556665543 4666654 4556778889999999986 344444444
No 84
>3rot_A ABC sugar transporter, periplasmic sugar binding; nysgrc, PSI-biology, structural genomics; 1.91A {Legionella pneumophila subsp}
Probab=98.39 E-value=9.7e-06 Score=86.69 Aligned_cols=205 Identities=11% Similarity=-0.025 Sum_probs=142.9
Q ss_pred eEEEeEEEecC-CCchhHHHHHHHHHHHHHhcCCCCCCCcEEEEEEecCCCChHHHHHHHHHHHhcCcEEEE-ccCChhh
Q 002211 49 VLNVGAIFSFG-TVNGQVSRIAMKAAQDDINSDPRVLGGRKLSITMHDAKFNGFLSIMGALQFMETDTLAIV-GPQSAVM 126 (953)
Q Consensus 49 ~i~IG~l~~~~-~~~g~~~~~a~~lAve~iN~~g~il~g~~l~l~~~D~~~~~~~a~~~a~~li~~~v~aii-Gp~~S~~ 126 (953)
.++||++.|.. ..+......+++-+.++. |+++.+...++..++..-.+....++.+++.+|| .|..+..
T Consensus 3 ~~~Igvi~~~~~~~~~~~~~~gi~~~a~~~--------g~~~~~~~~~~~~~~~~~~~~i~~l~~~~vdgiii~~~~~~~ 74 (297)
T 3rot_A 3 RDKYYLITHGSQDPYWTSLFQGAKKAAEEL--------KVDLQILAPPGANDVPKQVQFIESALATYPSGIATTIPSDTA 74 (297)
T ss_dssp CCEEEEECSCCCSHHHHHHHHHHHHHHHHH--------TCEEEEECCSSSCCHHHHHHHHHHHHHTCCSEEEECCCCSST
T ss_pred eEEEEEEecCCCCchHHHHHHHHHHHHHHh--------CcEEEEECCCCcCCHHHHHHHHHHHHHcCCCEEEEeCCCHHH
Confidence 47899999875 555667788888888874 4566543322326888888888899999988877 5555554
Q ss_pred HHHHHHhhhhCCCcEEEeecCCCCCCCCCCCcEEEccCChHHHHHHHHHHHHHcC--CcEEEEEEec--CccccchHHHH
Q 002211 127 AHVLSHLANELQVPLLSFTALDPTLSPLQYPFFVQTAPNDLYLMSAIAEMVSYFG--WGEVIAIFND--DDQGRNGVTAL 202 (953)
Q Consensus 127 a~av~~v~~~~~vP~Is~~at~~~ls~~~~p~~fr~~p~d~~~~~ai~~~l~~~~--w~~vaii~~d--~~~g~~~~~~l 202 (953)
.......+...++|+|......+... ..+.+..+..++...+..+++++...| -++++++..+ ........+.|
T Consensus 75 ~~~~~~~~~~~giPvV~~~~~~~~~~--~~~~~~~V~~D~~~~g~~a~~~l~~~g~~~~~i~~i~g~~~~~~~~~R~~Gf 152 (297)
T 3rot_A 75 FSKSLQRANKLNIPVIAVDTRPKDKT--KNPYLVFLGSDNLLAGKKLGEKALELTPSAKRALVLNPQPGHIGLEKRAYGI 152 (297)
T ss_dssp THHHHHHHHHHTCCEEEESCCCSCTT--TSCCSCEEECCHHHHHHHHHHHHHHHCTTCCEEEEEESCTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHCCCCEEEEcCCCcccc--ccCcceEEccChHHHHHHHHHHHHHhcCCCceEEEEeCCCCcHHHHHHHHHH
Confidence 45566677778999998765443221 123445566778888899999988888 8999999754 33445678899
Q ss_pred HHHHHhcCcEEEEEEecCCCCCCChHHHHHHHHHHhcC--CceEEEEEcchhhHHHHHHHHHHcCCCCC
Q 002211 203 GDKLAEIRCKISYKSALPPDQSVTETDVRNELVKVRMM--EARVIVVHGYSRTGLMVFDVAQRLGMMDS 269 (953)
Q Consensus 203 ~~~l~~~g~~v~~~~~~~~~~~~~~~d~~~~l~~i~~~--~~~vii~~~~~~~~~~~~~~a~~~g~~~~ 269 (953)
.+++++.|+++.... .. .........+.++.+. ++++|+. .+...+..++++++++|+..+
T Consensus 153 ~~~l~~~g~~~~~~~--~~---~~~~~~~~~~~~~l~~~~~~~ai~~-~~d~~A~g~~~al~~~g~~vP 215 (297)
T 3rot_A 153 KTILQDKGIFFEELD--VG---TDPNQVQSRVKSYFKIHPETNIIFC-LTSQALDPLGQMLLHPDRYDF 215 (297)
T ss_dssp HHHHHHTTCEEEEEE--CC---SCHHHHHHHHHHHHHHCTTCCEEEE-SSHHHHHHHHHHHHSHHHHTC
T ss_pred HHHHHhcCCeEEEee--cC---CChHHHHHHHHHHHHhCCCCCEEEE-cCCcchHHHHHHHHhcCCccC
Confidence 999999999987644 21 1245555566664443 4566554 556677888999999887543
No 85
>1tjy_A Sugar transport protein; protein-ligand complex, signaling protein; HET: PAV; 1.30A {Salmonella typhimurium} SCOP: c.93.1.1 PDB: 1tm2_A 3t95_A* 3ejw_A*
Probab=98.37 E-value=3.2e-05 Score=83.42 Aligned_cols=206 Identities=12% Similarity=-0.006 Sum_probs=135.1
Q ss_pred EEeEEEecC-CCchhHHHHHHHHHHHHHhcCCCCCCCcEEEEEEe-cCCCChHHHHHHHHHHHhcCcEEEE-ccCChhhH
Q 002211 51 NVGAIFSFG-TVNGQVSRIAMKAAQDDINSDPRVLGGRKLSITMH-DAKFNGFLSIMGALQFMETDTLAIV-GPQSAVMA 127 (953)
Q Consensus 51 ~IG~l~~~~-~~~g~~~~~a~~lAve~iN~~g~il~g~~l~l~~~-D~~~~~~~a~~~a~~li~~~v~aii-Gp~~S~~a 127 (953)
+||++.|.. ..+......+++.++++. |+++ .+. ++..++....+....++.++|.+|| .|..+...
T Consensus 5 ~Igvi~~~~~~~~~~~~~~g~~~~~~~~--------g~~~--~~~~~~~~d~~~q~~~i~~li~~~vdgiii~~~~~~~~ 74 (316)
T 1tjy_A 5 RIAFIPKLVGVGFFTSGGNGAQEAGKAL--------GIDV--TYDGPTEPSVSGQVQLVNNFVNQGYDAIIVSAVSPDGL 74 (316)
T ss_dssp EEEEECSSSSSHHHHHHHHHHHHHHHHH--------TCEE--EECCCSSCCHHHHHHHHHHHHHTTCSEEEECCSSSSTT
T ss_pred EEEEEeCCCCChHHHHHHHHHHHHHHHh--------CCEE--EEECCCCCCHHHHHHHHHHHHHcCCCEEEEeCCCHHHH
Confidence 799999864 455566778888888775 3444 455 4778888888888999999988855 56655544
Q ss_pred HHHHHhhhhCCCcEEEeecCCCCCCCCCCCcEEEccCChHHHHHHHHHHHHH---cCCcEEEEEEec--CccccchHHHH
Q 002211 128 HVLSHLANELQVPLLSFTALDPTLSPLQYPFFVQTAPNDLYLMSAIAEMVSY---FGWGEVIAIFND--DDQGRNGVTAL 202 (953)
Q Consensus 128 ~av~~v~~~~~vP~Is~~at~~~ls~~~~p~~fr~~p~d~~~~~ai~~~l~~---~~w~~vaii~~d--~~~g~~~~~~l 202 (953)
..+...+...++|+|.+....+ .. .+..+....++...+..+++++.. .|-+++++|... +.......+.+
T Consensus 75 ~~~~~~a~~~gipvV~~d~~~~---~~-~~~~~v~~~D~~~~g~~~~~~L~~~~~~g~~~i~~i~g~~~~~~~~~r~~g~ 150 (316)
T 1tjy_A 75 CPALKRAMQRGVKILTWDSDTK---PE-CRSYYINQGTPKQLGSMLVEMAAHQVDKEKAKVAFFYSSPTVTDQNQWVKEA 150 (316)
T ss_dssp HHHHHHHHHTTCEEEEESSCCC---GG-GCSEEEESCCHHHHHHHHHHHHHHHHCSSSEEEEEEESCSSCHHHHHHHHHH
T ss_pred HHHHHHHHHCcCEEEEecCCCC---CC-CceEEEecCCHHHHHHHHHHHHHHHcCCCCCEEEEEEcCCCChhHHHHHHHH
Confidence 5556667788999998754321 11 112333356666778888888766 578999999843 33455667888
Q ss_pred HHHHHhc--CcEEEEEEecCCCCCCChHHHHHHHHHHhcC--CceEEEEEcchhhHHHHHHHHHHcCCCCCceEEEEeC
Q 002211 203 GDKLAEI--RCKISYKSALPPDQSVTETDVRNELVKVRMM--EARVIVVHGYSRTGLMVFDVAQRLGMMDSGYVWIATT 277 (953)
Q Consensus 203 ~~~l~~~--g~~v~~~~~~~~~~~~~~~d~~~~l~~i~~~--~~~vii~~~~~~~~~~~~~~a~~~g~~~~~~~wi~~~ 277 (953)
.+.+++. ++++.....-.. +.++....++++.+. ++++|+. .+...+..++++++++| . .+...++.|
T Consensus 151 ~~~l~~~~~~~~~~~~~~~~~----~~~~~~~~~~~ll~~~~~~~aI~~-~nD~~A~g~~~al~~~G-~-~dv~VvG~D 222 (316)
T 1tjy_A 151 KAKISQEHPGWEIVTTQFGYN----DATKSLQTAEGIIKAYPDLDAIIA-PDANALPAAAQAAENLK-R-NNLAIVGFS 222 (316)
T ss_dssp HHHHHHHCTTEEEEEEEECTT----CHHHHHHHHHHHHHHCSSCCEEEE-CSTTHHHHHHHHHHHTT-C-CSCEEEEBC
T ss_pred HHHHHhhCCCcEEEEeccCCC----CHHHHHHHHHHHHHhCCCCCEEEE-CCCccHHHHHHHHHHcC-C-CCEEEEEeC
Confidence 8999776 666654322222 245555566666543 4566554 44566788899999998 5 344444443
No 86
>2fn9_A Ribose ABC transporter, periplasmic ribose-bindin; RBP, ribose binding protein, periplasmic binding protein, thermophilic proteins; 1.40A {Thermotoga maritima} PDB: 2fn8_A*
Probab=98.36 E-value=2.2e-05 Score=83.53 Aligned_cols=197 Identities=11% Similarity=0.038 Sum_probs=130.4
Q ss_pred EEEeEEEec-CCCchhHHHHHHHHHHHHHhcCCCCCCCcEEEEEEecCCCChHHHHHHHHHHHhcCcEEEEccCC-hhhH
Q 002211 50 LNVGAIFSF-GTVNGQVSRIAMKAAQDDINSDPRVLGGRKLSITMHDAKFNGFLSIMGALQFMETDTLAIVGPQS-AVMA 127 (953)
Q Consensus 50 i~IG~l~~~-~~~~g~~~~~a~~lAve~iN~~g~il~g~~l~l~~~D~~~~~~~a~~~a~~li~~~v~aiiGp~~-S~~a 127 (953)
.+||++.|. +..+......+++.++++. |+++. +.|+..++....+....++++++.+||.... ....
T Consensus 3 ~~Ig~i~~~~~~~~~~~~~~gi~~~~~~~--------g~~~~--~~~~~~~~~~~~~~~~~l~~~~vdgiI~~~~~~~~~ 72 (290)
T 2fn9_A 3 GKMAIVISTLNNPWFVVLAETAKQRAEQL--------GYEAT--IFDSQNDTAKESAHFDAIIAAGYDAIIFNPTDADGS 72 (290)
T ss_dssp CEEEEEESCSSSHHHHHHHHHHHHHHHHT--------TCEEE--EEECTTCHHHHHHHHHHHHHTTCSEEEECCSCTTTT
T ss_pred eEEEEEeCCCCChHHHHHHHHHHHHHHHc--------CCEEE--EeCCCCCHHHHHHHHHHHHHcCCCEEEEecCChHHH
Confidence 479999986 3555566778888777762 55554 5677788888778888888889998886333 3322
Q ss_pred HHHHHhhhhCCCcEEEeecCCCCCCCCCCCcEEE-ccCChHHHHHHHHHHHHHc------CCcE--EEEEEec--Ccccc
Q 002211 128 HVLSHLANELQVPLLSFTALDPTLSPLQYPFFVQ-TAPNDLYLMSAIAEMVSYF------GWGE--VIAIFND--DDQGR 196 (953)
Q Consensus 128 ~av~~v~~~~~vP~Is~~at~~~ls~~~~p~~fr-~~p~d~~~~~ai~~~l~~~------~w~~--vaii~~d--~~~g~ 196 (953)
......+.+.++|+|......+. . +++.. +..++...+..+++++... |.++ ++++... .....
T Consensus 73 ~~~~~~~~~~~iPvV~~~~~~~~---~--~~~~~~V~~D~~~~~~~~~~~L~~~~g~~~~G~r~i~i~~l~g~~~~~~~~ 147 (290)
T 2fn9_A 73 IANVKRAKEAGIPVFCVDRGINA---R--GLAVAQIYSDNYYGGVLAGEYFVKFLKEKYPDAKEIPYAELLGILSAQPTW 147 (290)
T ss_dssp HHHHHHHHHTTCCEEEESSCCSC---S--SSSSEEEEECHHHHHHHHHHHHHHHHHHHCSSCSCEEEEEEECCTTCHHHH
T ss_pred HHHHHHHHHCCCeEEEEecCCCC---C--CceEEEEeCCHHHHHHHHHHHHHHHhcccCCcccceeEEEEEcCCCCchHH
Confidence 23445566789999987543321 1 11222 5566777788888887776 8899 6667643 33455
Q ss_pred chHHHHHHHHHhc-CcEEEEEEecCCCCCCChHHHHHHHHHHhc--CCceEEEEEcchhhHHHHHHHHHHcCC
Q 002211 197 NGVTALGDKLAEI-RCKISYKSALPPDQSVTETDVRNELVKVRM--MEARVIVVHGYSRTGLMVFDVAQRLGM 266 (953)
Q Consensus 197 ~~~~~l~~~l~~~-g~~v~~~~~~~~~~~~~~~d~~~~l~~i~~--~~~~vii~~~~~~~~~~~~~~a~~~g~ 266 (953)
...+.|.+++++. |+++.....-. .+..+....+.++.+ .++++|+. .+...+..+++++++.|+
T Consensus 148 ~R~~gf~~~l~~~~g~~~~~~~~~~----~~~~~~~~~~~~ll~~~~~~~ai~~-~~d~~a~g~~~al~~~g~ 215 (290)
T 2fn9_A 148 DRSNGFHSVVDQYPEFKMVAQQSAE----FDRDTAYKVTEQILQAHPEIKAIWC-GNDAMALGAMKACEAAGR 215 (290)
T ss_dssp HHHHHHHHHHTTSTTEEEEEEEECT----TCHHHHHHHHHHHHHHCTTCCEEEE-SSHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHhCCCCEEEEeccCC----CCHHHHHHHHHHHHHhCCCCcEEEE-CCchHHHHHHHHHHHCCC
Confidence 6788899999998 88765422111 123444455555543 35787765 455667889999999997
No 87
>2qu7_A Putative transcriptional regulator; structural genomics, PSI-2, protein structure initiative; 2.30A {Staphylococcus saprophyticus subsp}
Probab=98.35 E-value=2.7e-06 Score=90.52 Aligned_cols=204 Identities=7% Similarity=-0.083 Sum_probs=131.9
Q ss_pred CceEEEeEEEecCCCchhHHHHHHHHHHHHHhcCCCCCCCcEEEEEEecCCCChHHHHHHHHHHHhcCcEEEEccCChhh
Q 002211 47 PEVLNVGAIFSFGTVNGQVSRIAMKAAQDDINSDPRVLGGRKLSITMHDAKFNGFLSIMGALQFMETDTLAIVGPQSAVM 126 (953)
Q Consensus 47 ~~~i~IG~l~~~~~~~g~~~~~a~~lAve~iN~~g~il~g~~l~l~~~D~~~~~~~a~~~a~~li~~~v~aiiGp~~S~~ 126 (953)
....+||++.|.+..+......+++.+.++. |+++. +.++..++....+....++++++.+||....+..
T Consensus 6 ~~~~~Igvi~~~~~~~~~~~~~gi~~~~~~~--------g~~~~--~~~~~~~~~~~~~~~~~l~~~~vdgiI~~~~~~~ 75 (288)
T 2qu7_A 6 GRSNIIAFIVPDQNPFFTEVLTEISHECQKH--------HLHVA--VASSEENEDKQQDLIETFVSQNVSAIILVPVKSK 75 (288)
T ss_dssp -CEEEEEEEESSCCHHHHHHHHHHHHHHGGG--------TCEEE--EEECTTCHHHHHHHHHHHHHTTEEEEEECCSSSC
T ss_pred CCCCEEEEEECCCCchHHHHHHHHHHHHHHC--------CCEEE--EEeCCCCHHHHHHHHHHHHHcCccEEEEecCCCC
Confidence 4567899999873334445566666666542 55554 4577778877777788888889999886443322
Q ss_pred HHHHHHhhhhCCCcEEEeecCCCCCCCCCCCcEEEccCChHHHHHHHHHHHHHcCCcEEEEEEec--CccccchHHHHHH
Q 002211 127 AHVLSHLANELQVPLLSFTALDPTLSPLQYPFFVQTAPNDLYLMSAIAEMVSYFGWGEVIAIFND--DDQGRNGVTALGD 204 (953)
Q Consensus 127 a~av~~v~~~~~vP~Is~~at~~~ls~~~~p~~fr~~p~d~~~~~ai~~~l~~~~w~~vaii~~d--~~~g~~~~~~l~~ 204 (953)
...+..+ .++|+|......+. +.+..+..++...+..+++++...|.++++++... ........+.|.+
T Consensus 76 ~~~~~~l---~~iPvV~~~~~~~~------~~~~~V~~d~~~~g~~a~~~L~~~G~~~I~~i~~~~~~~~~~~R~~gf~~ 146 (288)
T 2qu7_A 76 FQMKREW---LKIPIMTLDRELES------TSLPSITVDNEEAAYIATKRVLESTCKEVGLLLANPNISTTIGRKNGYNK 146 (288)
T ss_dssp CCCCGGG---GGSCEEEESCCCSS------CCCCEEEECHHHHHHHHHHHHHTSSCCCEEEEECCTTSHHHHHHHHHHHH
T ss_pred hHHHHHh---cCCCEEEEecccCC------CCCCEEEECcHHHHHHHHHHHHHcCCCcEEEEecCCCCCCHHHHHHHHHH
Confidence 2222222 78999987543321 22345566777788889999888899999999854 3345667789999
Q ss_pred HHHhcCcEEEEEEec--CCCCCC----ChHHHHHHHHHHhcCCceEEEEEcchhhHHHHHHHHHHcCCCCCceE
Q 002211 205 KLAEIRCKISYKSAL--PPDQSV----TETDVRNELVKVRMMEARVIVVHGYSRTGLMVFDVAQRLGMMDSGYV 272 (953)
Q Consensus 205 ~l~~~g~~v~~~~~~--~~~~~~----~~~d~~~~l~~i~~~~~~vii~~~~~~~~~~~~~~a~~~g~~~~~~~ 272 (953)
++++.|+++.....+ ... . +..+-...+.++.+.++++|+.. +...+..+++++++.|+..++-+
T Consensus 147 ~l~~~g~~~~~~~i~~~~~~--~~~~~~~~~~~~~~~~~l~~~~~ai~~~-~d~~a~g~~~al~~~g~~vP~di 217 (288)
T 2qu7_A 147 AISEFDLNVNPSLIHYSDQQ--LGTNAQIYSGYEATKTLLSKGIKGIVAT-NHLLLLGALQAIKESEKEIKKDV 217 (288)
T ss_dssp HHHHTTCCCCGGGEEECCSS--CSHHHHHHHHHHHHHHHHHTTCCEEEEC-SHHHHHHHHHHHHHSSCCBTTTB
T ss_pred HHHHcCCCCCcceEEeccCC--ccccCCHHHHHHHHHHHHhcCCCEEEEC-CcHHHHHHHHHHHHhCCCCCCce
Confidence 999998765321111 111 1 12333344455444488887754 45567788999999998654433
No 88
>1dbq_A Purine repressor; transcription regulation, DNA-binding regulatory protein; 2.20A {Escherichia coli} SCOP: c.93.1.1 PDB: 1jhz_A
Probab=98.34 E-value=1.8e-05 Score=84.05 Aligned_cols=207 Identities=11% Similarity=-0.006 Sum_probs=134.1
Q ss_pred CceEEEeEEEec-CCCchhHHHHHHHHHHHHHhcCCCCCCCcEEEEEEecCCCChHHHHHHHHHHHhcCcEEEEccCChh
Q 002211 47 PEVLNVGAIFSF-GTVNGQVSRIAMKAAQDDINSDPRVLGGRKLSITMHDAKFNGFLSIMGALQFMETDTLAIVGPQSAV 125 (953)
Q Consensus 47 ~~~i~IG~l~~~-~~~~g~~~~~a~~lAve~iN~~g~il~g~~l~l~~~D~~~~~~~a~~~a~~li~~~v~aiiGp~~S~ 125 (953)
....+||++.|. +..+......+++.+.++. |+++.+ .++..++....+....++++++.+||......
T Consensus 5 ~~~~~Ig~i~~~~~~~~~~~~~~gi~~~~~~~--------g~~~~~--~~~~~~~~~~~~~~~~l~~~~vdgii~~~~~~ 74 (289)
T 1dbq_A 5 NHTKSIGLLATSSEAAYFAEIIEAVEKNCFQK--------GYTLIL--GNAWNNLEKQRAYLSMMAQKRVDGLLVMCSEY 74 (289)
T ss_dssp ---CEEEEEESCTTSHHHHHHHHHHHHHHHHH--------TCEEEE--EECTTCHHHHHHHHHHHHHTTCSEEEEECSCC
T ss_pred CCCCEEEEEeCCCCChHHHHHHHHHHHHHHHc--------CCeEEE--EcCCCChHHHHHHHHHHHhCCCCEEEEEeccC
Confidence 345689999985 3455566778888887763 555554 57777888777778888888898888532222
Q ss_pred hHHHHHHhhhh-CCCcEEEeecCCCCCCCCCCCcEEEccCChHHHHHHHHHHHHHcCCcEEEEEEec--CccccchHHHH
Q 002211 126 MAHVLSHLANE-LQVPLLSFTALDPTLSPLQYPFFVQTAPNDLYLMSAIAEMVSYFGWGEVIAIFND--DDQGRNGVTAL 202 (953)
Q Consensus 126 ~a~av~~v~~~-~~vP~Is~~at~~~ls~~~~p~~fr~~p~d~~~~~ai~~~l~~~~w~~vaii~~d--~~~g~~~~~~l 202 (953)
.. ...+.+.+ .++|+|......+. . ++...+..++...+..+++++...|.+++++|..+ ........+.|
T Consensus 75 ~~-~~~~~l~~~~~iPvV~~~~~~~~---~--~~~~~V~~d~~~~~~~~~~~L~~~G~~~i~~i~~~~~~~~~~~R~~g~ 148 (289)
T 1dbq_A 75 PE-PLLAMLEEYRHIPMVVMDWGEAK---A--DFTDAVIDNAFEGGYMAGRYLIERGHREIGVIPGPLERNTGAGRLAGF 148 (289)
T ss_dssp CH-HHHHHHHHTTTSCEEEEECSSCC---S--SSCEEEEECHHHHHHHHHHHHHHTTCCSEEEECCC------CHHHHHH
T ss_pred CH-HHHHHHHhccCCCEEEEccCCCc---c--CcCCEEEeCcHHHHHHHHHHHHHCCCCeEEEEecCCccccHHHHHHHH
Confidence 11 23344444 79999987654321 1 22334556777778889999888899999999754 34566778999
Q ss_pred HHHHHhcCcEEEEEEecCCCCCCChHHHHHHHHHHhc--CCceEEEEEcchhhHHHHHHHHHHcCCCCCceE
Q 002211 203 GDKLAEIRCKISYKSALPPDQSVTETDVRNELVKVRM--MEARVIVVHGYSRTGLMVFDVAQRLGMMDSGYV 272 (953)
Q Consensus 203 ~~~l~~~g~~v~~~~~~~~~~~~~~~d~~~~l~~i~~--~~~~vii~~~~~~~~~~~~~~a~~~g~~~~~~~ 272 (953)
.+++++.|+.+.....+... .+..+....+.++.+ .++++|+.. +...+..+++++++.|+..++-+
T Consensus 149 ~~~l~~~g~~~~~~~~~~~~--~~~~~~~~~~~~~l~~~~~~~ai~~~-~d~~a~g~~~al~~~G~~vP~di 217 (289)
T 1dbq_A 149 MKAMEEAMIKVPESWIVQGD--FEPESGYRAMQQILSQPHRPTAVFCG-GDIMAMGALCAADEMGLRVPQDV 217 (289)
T ss_dssp HHHHHHTTCCCCGGGBCCCC--SSHHHHHHHHHHHHTSSSCCSEEEES-CHHHHHHHHHHHHHTTCCTTTTC
T ss_pred HHHHHHCCCCCChHHeEeCC--CCHHHHHHHHHHHHhCCCCCCEEEEC-CcHHHHHHHHHHHHcCCCCCCce
Confidence 99999998765321112211 124444555666654 357777654 45677789999999998754433
No 89
>2x7x_A Sensor protein; transferase, sensor histidine kinase; HET: FRU; 2.64A {Bacteroides thetaiotaomicron}
Probab=98.27 E-value=4.7e-05 Score=82.52 Aligned_cols=211 Identities=7% Similarity=0.051 Sum_probs=133.1
Q ss_pred CceEEEeEEEecCCCchhHHHHHHHHHHHHHhcCCCCCCCcEEEEEEecCCCChHHHHHHHHHHHhcCcEEEEccCChhh
Q 002211 47 PEVLNVGAIFSFGTVNGQVSRIAMKAAQDDINSDPRVLGGRKLSITMHDAKFNGFLSIMGALQFMETDTLAIVGPQSAVM 126 (953)
Q Consensus 47 ~~~i~IG~l~~~~~~~g~~~~~a~~lAve~iN~~g~il~g~~l~l~~~D~~~~~~~a~~~a~~li~~~v~aiiGp~~S~~ 126 (953)
....+||++.|.+..+-.....|++-+.++ . .|+++. +.++..++.........+++++|.+||....+..
T Consensus 4 ~~~~~Igvi~~~~~~~~~~~~~gi~~~a~~---~----~g~~l~--i~~~~~~~~~~~~~i~~l~~~~vdgiIi~~~~~~ 74 (325)
T 2x7x_A 4 TPHFRIGVAQCSDDSWRHKMNDEILREAMF---Y----NGVSVE--IRSAGDDNSKQAEDVHYFMDEGVDLLIISANEAA 74 (325)
T ss_dssp --CCEEEEEESCCSHHHHHHHHHHHHHHTT---S----SSCEEE--EEECTTCHHHHHHHHHHHHHTTCSEEEECCSSHH
T ss_pred CCCeEEEEEecCCCHHHHHHHHHHHHHHHH---c----CCcEEE--EeCCCCCHHHHHHHHHHHHHcCCCEEEEeCCCHH
Confidence 346789999987333333445555554432 2 145554 5677778888777888888889999886444332
Q ss_pred -HHHHHHhhhhCCCcEEEeecCCCCCCCCCCCcEEEccCChHHHHHHHHHHHHHc--CCcEEEEEEecC--ccccchHHH
Q 002211 127 -AHVLSHLANELQVPLLSFTALDPTLSPLQYPFFVQTAPNDLYLMSAIAEMVSYF--GWGEVIAIFNDD--DQGRNGVTA 201 (953)
Q Consensus 127 -a~av~~v~~~~~vP~Is~~at~~~ls~~~~p~~fr~~p~d~~~~~ai~~~l~~~--~w~~vaii~~d~--~~g~~~~~~ 201 (953)
.......+...++|+|......+ . .+.+..+..++...+..+++++... |.++++++..+. .......+.
T Consensus 75 ~~~~~~~~~~~~~iPvV~~~~~~~---~--~~~~~~V~~D~~~~g~~a~~~L~~~~~G~~~I~~i~~~~~~~~~~~R~~G 149 (325)
T 2x7x_A 75 PMTPIVEEAYQKGIPVILVDRKIL---S--DKYTAYIGADNYEIGRSVGNYIASSLKGKGNIVELTGLSGSTPAMERHQG 149 (325)
T ss_dssp HHHHHHHHHHHTTCCEEEESSCCS---S--SCSSEEEEECHHHHHHHHHHHHHHHTTTEEEEEEEESCTTSHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCeEEEeCCCCC---C--cceeEEEecCHHHHHHHHHHHHHHHcCCCceEEEEECCCCCccHHHHHHH
Confidence 23344556678999998754322 1 1223445567777788888887765 899999998542 345566789
Q ss_pred HHHHHHhc-CcEEEEEEecCCCCCCChHHHHHHHHHHhc--CCceEEEEEcchhhHHHHHHHHHHcCCCCCceEEEEeC
Q 002211 202 LGDKLAEI-RCKISYKSALPPDQSVTETDVRNELVKVRM--MEARVIVVHGYSRTGLMVFDVAQRLGMMDSGYVWIATT 277 (953)
Q Consensus 202 l~~~l~~~-g~~v~~~~~~~~~~~~~~~d~~~~l~~i~~--~~~~vii~~~~~~~~~~~~~~a~~~g~~~~~~~wi~~~ 277 (953)
|.+++++. |+++..... .. .+..+....+.++.+ .++++|+. .+...+..+++++++.|+ ..+...++.|
T Consensus 150 f~~al~~~pg~~~~~~~~--~~--~~~~~~~~~~~~ll~~~~~~~aI~~-~nd~~A~g~~~al~~~Gi-p~dv~vig~D 222 (325)
T 2x7x_A 150 FMAAISKFPDIKLIDKAD--AA--WERGPAEIEMDSMLRRHPKIDAVYA-HNDRIAPGAYQAAKMAGR-EKEMIFVGID 222 (325)
T ss_dssp HHHHHHTCTEEEEEEEEE--CT--TSHHHHHHHHHHHHHHCSCCCEEEE-SSTTHHHHHHHHHHHTTC-TTSSEEEEEE
T ss_pred HHHHHHhCCCCEEEeeec--CC--CCHHHHHHHHHHHHHhCCCCCEEEE-CCCchHHHHHHHHHHcCC-CCCeEEEEEC
Confidence 99999998 887654221 11 123444445555543 35777764 455567788999999996 3344444444
No 90
>3l49_A ABC sugar (ribose) transporter, periplasmic substrate-binding subunit; sugar binding/transporter, structural genomics, PSI; HET: UNL; 2.30A {Rhodobacter sphaeroides}
Probab=98.27 E-value=3.3e-05 Score=82.15 Aligned_cols=209 Identities=13% Similarity=0.013 Sum_probs=140.9
Q ss_pred ceEEEeEEEecC-CCchhHHHHHHHHHHHHHhcCCCCCCCcEEEEEEecCCCChHHHHHHHHHHHhcCcEEEE-ccCChh
Q 002211 48 EVLNVGAIFSFG-TVNGQVSRIAMKAAQDDINSDPRVLGGRKLSITMHDAKFNGFLSIMGALQFMETDTLAIV-GPQSAV 125 (953)
Q Consensus 48 ~~i~IG~l~~~~-~~~g~~~~~a~~lAve~iN~~g~il~g~~l~l~~~D~~~~~~~a~~~a~~li~~~v~aii-Gp~~S~ 125 (953)
..-+||++.|.. ..+......+++-+.++. |+++. +.++..++.........++.+++.+|| .|..+.
T Consensus 4 ~~~~Ig~i~~~~~~~~~~~~~~gi~~~a~~~--------g~~~~--~~~~~~~~~~~~~~~~~l~~~~vdgiIi~~~~~~ 73 (291)
T 3l49_A 4 EGKTIGITAIGTDHDWDLKAYQAQIAEIERL--------GGTAI--ALDAGRNDQTQVSQIQTLIAQKPDAIIEQLGNLD 73 (291)
T ss_dssp TTCEEEEEESCCSSHHHHHHHHHHHHHHHHT--------TCEEE--EEECTTCHHHHHHHHHHHHHHCCSEEEEESSCHH
T ss_pred CCcEEEEEeCCCCChHHHHHHHHHHHHHHHc--------CCEEE--EEcCCCCHHHHHHHHHHHHHcCCCEEEEeCCChh
Confidence 356899999964 444455677777777763 45554 557778888878888888888998887 566655
Q ss_pred hHHHHHHhhhhCCCcEEEeecCCCCCCCCCCCcEEEccCChHHHHHHHHHHHHH--cCCcEEEEEEecC--ccccchHHH
Q 002211 126 MAHVLSHLANELQVPLLSFTALDPTLSPLQYPFFVQTAPNDLYLMSAIAEMVSY--FGWGEVIAIFNDD--DQGRNGVTA 201 (953)
Q Consensus 126 ~a~av~~v~~~~~vP~Is~~at~~~ls~~~~p~~fr~~p~d~~~~~ai~~~l~~--~~w~~vaii~~d~--~~g~~~~~~ 201 (953)
........+...++|+|......+ +.+..+..++...+..+++++.. .|-++++++.... .......+.
T Consensus 74 ~~~~~~~~~~~~~iPvV~~~~~~~-------~~~~~V~~D~~~~g~~~~~~l~~~~~g~~~i~~i~~~~~~~~~~~R~~g 146 (291)
T 3l49_A 74 VLNPWLQKINDAGIPLFTVDTATP-------HAINNTTSNNYSIGAELALQMVADLGGKGNVLVFNGFYSVPVCKIRYDQ 146 (291)
T ss_dssp HHHHHHHHHHHTTCCEEEESCCCT-------TCSEEEEECHHHHHHHHHHHHHHHHTTCEEEEEECSCTTSHHHHHHHHH
T ss_pred hhHHHHHHHHHCCCcEEEecCCCC-------CcCceEecChHHHHHHHHHHHHHHcCCCceEEEEeCCCCCchHHHHHHH
Confidence 566667778888999998765432 12334566777778889999888 8999999997442 234455788
Q ss_pred HHHHHHhc-CcEEEEEEecCCCCCCChHHHHHHHHHHhcC-----CceEEEEEcchhhHHHHHHHHHHcCCCCCceEEEE
Q 002211 202 LGDKLAEI-RCKISYKSALPPDQSVTETDVRNELVKVRMM-----EARVIVVHGYSRTGLMVFDVAQRLGMMDSGYVWIA 275 (953)
Q Consensus 202 l~~~l~~~-g~~v~~~~~~~~~~~~~~~d~~~~l~~i~~~-----~~~vii~~~~~~~~~~~~~~a~~~g~~~~~~~wi~ 275 (953)
|.+++++. |+++.....+... ..+.+.....+.++.+. ++++|+ +.+...+..+++++++.|+. +...++
T Consensus 147 f~~~l~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~l~~~~~~~~~~ai~-~~~d~~a~g~~~al~~~g~~--di~vvg 222 (291)
T 3l49_A 147 MKYVLEAFPDVKIIEPELRDVI-PNTIQSAYSNVTDMLTKYPNEGDVGAIW-ACWDVPMIGATQALQAAGRT--DIRTYG 222 (291)
T ss_dssp HHHHHHTCTTEEECSSCBCCCS-SSHHHHHHHHHHHHHHHCCSTTSCCEEE-ESSHHHHHHHHHHHHHTTCC--SCEEEE
T ss_pred HHHHHHHCCCCEEEeeeccCCC-CCCHHHHHHHHHHHHHhCCCcCCcCEEE-ECCCchHHHHHHHHHHcCCC--CeEEEE
Confidence 99999998 6775443322222 01233344455555443 567775 45667788899999999985 434444
Q ss_pred eC
Q 002211 276 TT 277 (953)
Q Consensus 276 ~~ 277 (953)
.|
T Consensus 223 ~d 224 (291)
T 3l49_A 223 VD 224 (291)
T ss_dssp EE
T ss_pred ec
Confidence 43
No 91
>2vk2_A YTFQ, ABC transporter periplasmic-binding protein YTFQ; transport protein, galactofuranose; HET: GZL; 1.20A {Escherichia coli}
Probab=98.25 E-value=6.2e-05 Score=80.72 Aligned_cols=207 Identities=10% Similarity=0.037 Sum_probs=133.3
Q ss_pred eEEEeEEEecC-CCchhHHHHHHHHHHHHHhcCCCCCCCcEEEEEEecCCCChHHHHHHHHHHHhcCcEEEEccCChhh-
Q 002211 49 VLNVGAIFSFG-TVNGQVSRIAMKAAQDDINSDPRVLGGRKLSITMHDAKFNGFLSIMGALQFMETDTLAIVGPQSAVM- 126 (953)
Q Consensus 49 ~i~IG~l~~~~-~~~g~~~~~a~~lAve~iN~~g~il~g~~l~l~~~D~~~~~~~a~~~a~~li~~~v~aiiGp~~S~~- 126 (953)
+++||++.|.. ..+......+++-+.++. |+++. +.++..++....+....+++++|.+||-...+..
T Consensus 2 ~~~Ig~i~~~~~~~~~~~~~~gi~~~a~~~--------g~~l~--~~~~~~~~~~~~~~i~~l~~~~vdgiIi~~~~~~~ 71 (306)
T 2vk2_A 2 PLTVGFSQVGSESGWRAAETNVAKSEAEKR--------GITLK--IADGQQKQENQIKAVRSFVAQGVDAIFIAPVVATG 71 (306)
T ss_dssp CCEEEEEECCCCSHHHHHHHHHHHHHHHHH--------TCEEE--EEECTTCHHHHHHHHHHHHHHTCSEEEECCSSSSS
T ss_pred CeEEEEEeCCCCCHHHHHHHHHHHHHHHHc--------CCEEE--EeCCCCCHHHHHHHHHHHHHcCCCEEEEeCCChhh
Confidence 57899999964 445556677777777764 45554 4577778877777778888889988875433322
Q ss_pred HHHHHHhhhhCCCcEEEeecCCCCCCCCCCCcEEEccCChHHHHHHHHHHHHHcC---CcEEEEEEecC--ccccchHHH
Q 002211 127 AHVLSHLANELQVPLLSFTALDPTLSPLQYPFFVQTAPNDLYLMSAIAEMVSYFG---WGEVIAIFNDD--DQGRNGVTA 201 (953)
Q Consensus 127 a~av~~v~~~~~vP~Is~~at~~~ls~~~~p~~fr~~p~d~~~~~ai~~~l~~~~---w~~vaii~~d~--~~g~~~~~~ 201 (953)
.......+...++|+|......+.. ...+++..+..++...+..+++++...| -++++++.... .......+.
T Consensus 72 ~~~~~~~~~~~~iPvV~~~~~~~~~--~~~~~~~~V~~D~~~~g~~a~~~L~~~g~g~~~~I~~i~~~~~~~~~~~R~~G 149 (306)
T 2vk2_A 72 WEPVLKEAKDAEIPVFLLDRSIDVK--DKSLYMTTVTADNILEGKLIGDWLVKEVNGKPCNVVELQGTVGASVAIDRKKG 149 (306)
T ss_dssp CHHHHHHHHHTTCCEEEESSCCCCS--CGGGSSEEEECCHHHHHHHHHHHHHHHHTTSCEEEEEEECSTTCHHHHHHHHH
T ss_pred HHHHHHHHHHCCCCEEEecCCCCCC--CccceEEEEecCHHHHHHHHHHHHHHhcCCCCCeEEEEEcCCCChhHHHHHHH
Confidence 1233455567899999875433211 1011344566677777888888887766 78999998542 334566788
Q ss_pred HHHHHHhcCc-EEEEEEecCCCCCCChHHHHHHHHHHhc-----CCceEEEEEcchhhHHHHHHHHHHcCCCCCceE
Q 002211 202 LGDKLAEIRC-KISYKSALPPDQSVTETDVRNELVKVRM-----MEARVIVVHGYSRTGLMVFDVAQRLGMMDSGYV 272 (953)
Q Consensus 202 l~~~l~~~g~-~v~~~~~~~~~~~~~~~d~~~~l~~i~~-----~~~~vii~~~~~~~~~~~~~~a~~~g~~~~~~~ 272 (953)
|.+++++.|. ++.... ... .+..+....+.++.+ .++++|+. .+...+..+++++++.|+..++-+
T Consensus 150 f~~al~~~g~~~~~~~~--~~~--~~~~~~~~~~~~ll~~~~~~~~~~ai~~-~nd~~A~g~~~al~~~G~~vP~di 221 (306)
T 2vk2_A 150 FAEAIKNAPNIKIIRSQ--SGD--FTRSKGKEVMESFIKAENNGKNICMVYA-HNDDMVIGAIQAIKEAGLKPGKDI 221 (306)
T ss_dssp HHHHTTTCTTEEEEEEE--ECT--TCHHHHHHHHHHHHHHTTTTTTCCEEEE-SSHHHHHHHHHHHHHTTCCBTTTB
T ss_pred HHHHHhhCCCeEEEEec--cCC--CcHHHHHHHHHHHHHhCCCCCCeeEEEE-CCchHHHHHHHHHHHcCCCCCCCe
Confidence 9999999885 433221 111 123444444555543 35777765 445667889999999998655433
No 92
>2fvy_A D-galactose-binding periplasmic protein; periplasmic binding protien, hinge, chemotaxis, transport,; HET: BGC; 0.92A {Escherichia coli} SCOP: c.93.1.1 PDB: 1glg_A* 2fw0_A* 2gbp_A* 2qw1_A* 2hph_A* 2ipn_A* 2ipm_A* 2ipl_A* 1gca_A* 1gcg_A 3ga5_A* 3gbp_A*
Probab=98.24 E-value=6e-05 Score=80.87 Aligned_cols=204 Identities=9% Similarity=0.003 Sum_probs=133.5
Q ss_pred EEEeEEEecC-CCchhHHHHHHHHHHHHHhcCCCCCCCcEEEEEEecCCCChHHHHHHHHHHHhcCcEEEEccC-ChhhH
Q 002211 50 LNVGAIFSFG-TVNGQVSRIAMKAAQDDINSDPRVLGGRKLSITMHDAKFNGFLSIMGALQFMETDTLAIVGPQ-SAVMA 127 (953)
Q Consensus 50 i~IG~l~~~~-~~~g~~~~~a~~lAve~iN~~g~il~g~~l~l~~~D~~~~~~~a~~~a~~li~~~v~aiiGp~-~S~~a 127 (953)
-+||++.|.. ..+......+++-+.++. |+ +++.+.++..++....+....++++++.+||-.. .....
T Consensus 3 ~~Igvi~~~~~~~~~~~~~~gi~~~a~~~--------g~-~~~~~~~~~~~~~~~~~~~~~~~~~~vdgiii~~~~~~~~ 73 (309)
T 2fvy_A 3 TRIGVTIYKYDDNFMSVVRKAIEQDAKAA--------PD-VQLLMNDSQNDQSKQNDQIDVLLAKGVKALAINLVDPAAA 73 (309)
T ss_dssp EEEEEEESCTTSHHHHHHHHHHHHHHHTC--------TT-EEEEEEECTTCHHHHHHHHHHHHHTTCSEEEECCSSGGGH
T ss_pred cEEEEEeccCCcHHHHHHHHHHHHHHHhc--------CC-eEEEEecCCCCHHHHHHHHHHHHHcCCCEEEEeCCCcchh
Confidence 4799999853 444455666666666552 44 3455667778888877778888888998887533 33333
Q ss_pred HHHHHhhhhCCCcEEEeecCCCCCCCCCCCcEEEccCChHHHHHHHHHHHHH------------cCCcEEEEEEec--Cc
Q 002211 128 HVLSHLANELQVPLLSFTALDPTLSPLQYPFFVQTAPNDLYLMSAIAEMVSY------------FGWGEVIAIFND--DD 193 (953)
Q Consensus 128 ~av~~v~~~~~vP~Is~~at~~~ls~~~~p~~fr~~p~d~~~~~ai~~~l~~------------~~w~~vaii~~d--~~ 193 (953)
......+...++|+|......+......++.+..+..++...+..+++++.. .|-+++++|... ..
T Consensus 74 ~~~~~~~~~~~iPvV~~~~~~~~~~~~~~~~~~~V~~d~~~~g~~~~~~L~~~~~~~~~~~~~g~g~~~i~~i~~~~~~~ 153 (309)
T 2fvy_A 74 GTVIEKARGQNVPVVFFNKEPSRKALDSYDKAYYVGTDSKESGIIQGDLIAKHWAANQGWDLNKDGQIQFVLLKGEPGHP 153 (309)
T ss_dssp HHHHHHHHTTTCCEEEESSCCCHHHHHTCTTEEEEECCHHHHHHHHHHHHHHHHHHCGGGCTTCSSSEEEEEEECSTTCH
T ss_pred HHHHHHHHHCCCcEEEecCCCCcccccccCccEEEecCHHHHHHHHHHHHHHHHhhcccccccCCCceEEEEEEcCCCCc
Confidence 3445566678999998754321100011345667778888888888888766 678899999854 33
Q ss_pred cccchHHHHHHHHHhcCcEEEEEEecCCCCCCChHHHHHHHHHHhcC----CceEEEEEcchhhHHHHHHHHHHcC
Q 002211 194 QGRNGVTALGDKLAEIRCKISYKSALPPDQSVTETDVRNELVKVRMM----EARVIVVHGYSRTGLMVFDVAQRLG 265 (953)
Q Consensus 194 ~g~~~~~~l~~~l~~~g~~v~~~~~~~~~~~~~~~d~~~~l~~i~~~----~~~vii~~~~~~~~~~~~~~a~~~g 265 (953)
......+.|.+.+++.|+.+.....+... .+..+-...+.++.+. ++++|+. .+...+..++++++++|
T Consensus 154 ~~~~R~~gf~~~l~~~g~~~~~~~~~~~~--~~~~~~~~~~~~~l~~~~~~~~~ai~~-~~d~~a~g~~~al~~~g 226 (309)
T 2fvy_A 154 DAEARTTYVIKELNDKGIKTEQLQLDTAM--WDTAQAKDKMDAWLSGPNANKIEVVIA-NNDAMAMGAVEALKAHN 226 (309)
T ss_dssp HHHHHHHHHHHHHHHTTCCEEEEEEEECT--TCHHHHHHHHHHHHTSTTGGGCCEEEE-SSHHHHHHHHHHHHHTT
T ss_pred cHHHHHHHHHHHHHhcCCceEEEEEecCC--CCHHHHHHHHHHHHHhCCCCCccEEEE-CCchhHHHHHHHHHHcC
Confidence 45667888999999998765432222222 2244445556666543 5677665 45566788999999988
No 93
>3o1i_D Periplasmic protein TORT; ligand free, two component sensor, periplasmic binding prote signaling protein; HET: PE4; 2.80A {Vibrio parahaemolyticus} PDB: 3o1h_B* 3o1j_C
Probab=98.23 E-value=2.3e-05 Score=83.92 Aligned_cols=205 Identities=9% Similarity=-0.066 Sum_probs=136.0
Q ss_pred ceEEEeEEEecC-CCchhHHHHHHHHHHHHHhcCCCCCCCcEEEEEEecCCCChHHHHHHHHHHHhcCcEEEE-ccCChh
Q 002211 48 EVLNVGAIFSFG-TVNGQVSRIAMKAAQDDINSDPRVLGGRKLSITMHDAKFNGFLSIMGALQFMETDTLAIV-GPQSAV 125 (953)
Q Consensus 48 ~~i~IG~l~~~~-~~~g~~~~~a~~lAve~iN~~g~il~g~~l~l~~~D~~~~~~~a~~~a~~li~~~v~aii-Gp~~S~ 125 (953)
...+||+++|-. ..+-.....+++-+.++. |+++.+...+...++....+....++++++.+|| .|..+.
T Consensus 4 ~~~~Igvi~~~~~~~~~~~~~~g~~~~a~~~--------g~~~~~~~~~~~~~~~~~~~~~~~~~~~~vdgiii~~~~~~ 75 (304)
T 3o1i_D 4 SDEKICAIYPHLKDSYWLSVNYGMVSEAEKQ--------GVNLRVLEAGGYPNKSRQEQQLALCTQWGANAIILGTVDPH 75 (304)
T ss_dssp -CCEEEEEESCSCSHHHHHHHHHHHHHHHHH--------TCEEEEEECSSTTCHHHHHHHHHHHHHHTCSEEEECCSSTT
T ss_pred CCcEEEEEeCCCCCcHHHHHHHHHHHHHHHc--------CCeEEEEcCCCCCCHHHHHHHHHHHHHcCCCEEEEeCCChh
Confidence 467899999864 444456677777777764 4666654444334888888888889988888877 444444
Q ss_pred hHHHHHHhhhhCCCcEEEeecCCCCCCCCCCCcEEEccCChHHHHHHHHHHHHHcC-----CcEEEEEEec--Cccccch
Q 002211 126 MAHVLSHLANELQVPLLSFTALDPTLSPLQYPFFVQTAPNDLYLMSAIAEMVSYFG-----WGEVIAIFND--DDQGRNG 198 (953)
Q Consensus 126 ~a~av~~v~~~~~vP~Is~~at~~~ls~~~~p~~fr~~p~d~~~~~ai~~~l~~~~-----w~~vaii~~d--~~~g~~~ 198 (953)
........+. .++|+|......+.......+.+..+..++...+..+++++...| -++++++... .......
T Consensus 76 ~~~~~~~~~~-~~iPvV~~~~~~~~~~~~~~~~~~~V~~D~~~~g~~a~~~l~~~g~~~~~~~~i~~i~~~~~~~~~~~R 154 (304)
T 3o1i_D 76 AYEHNLKSWV-GNTPVFATVNQLDLDEEQSTLLKGEVGVDWYWMGYEAGKYLAERHPKGSGKTNIALLLGPRTRGGTKPV 154 (304)
T ss_dssp SSTTTHHHHT-TTSCEEECSSCCCCCTTTGGGEEEECCCCHHHHHHHHHHHHHTTSBTTTCCEEEEEECCCC-----CHH
T ss_pred HHHHHHHHHc-CCCCEEEecCCCcccccCCCceEEEEecCHHHHHHHHHHHHHHhcccCCCCCEEEEEECCCCcchHHHH
Confidence 2223344455 899999875443221122335667778888888899999998888 8899999754 3345567
Q ss_pred HHHHHHHHHhcCcEEEEEEecCCCCCCChHHHHHHHHHHh-cCCceEEEEEcchhhHHHHHHHHHHcCCC
Q 002211 199 VTALGDKLAEIRCKISYKSALPPDQSVTETDVRNELVKVR-MMEARVIVVHGYSRTGLMVFDVAQRLGMM 267 (953)
Q Consensus 199 ~~~l~~~l~~~g~~v~~~~~~~~~~~~~~~d~~~~l~~i~-~~~~~vii~~~~~~~~~~~~~~a~~~g~~ 267 (953)
.+.|.+++++.|+++.... ... .+.+.....+.++. ..++++ | +++...+..++++++++|+.
T Consensus 155 ~~gf~~~l~~~~~~~~~~~--~~~--~~~~~~~~~~~~~l~~~~~~a-i-~~~d~~a~g~~~al~~~g~~ 218 (304)
T 3o1i_D 155 TTGFYEAIKNSDIHIVDSF--WAD--NDKELQRNLVQRVIDMGNIDY-I-VGSAVAIEAAISELRSADKT 218 (304)
T ss_dssp HHHHHHTTTTBTEEEEECC--CCC--SCHHHHHHHHHHHHHHSCCSE-E-EECHHHHHHHHHHHTTTTCG
T ss_pred HHHHHHHHhcCCCEEEEee--cCC--CcHHHHHHHHHHHHcCCCCCE-E-EecCcchHHHHHHHHhcCCC
Confidence 8999999999998876533 222 22344334444433 346788 4 45667888899999999975
No 94
>3lkv_A Uncharacterized conserved domain protein; ATPase binding cassette, PSI, MCSG, structural genomics, Pro structure initiative; HET: PHE; 2.20A {Vibrio cholerae}
Probab=98.23 E-value=4.4e-05 Score=81.67 Aligned_cols=190 Identities=16% Similarity=0.150 Sum_probs=128.8
Q ss_pred CCceEEEeEEEecCCCchhHHHHHHHHHHHHHhcCCCCCCCcEEEEEEecCCCChHHHHHHHHHHHhcCcEEEEccCChh
Q 002211 46 KPEVLNVGAIFSFGTVNGQVSRIAMKAAQDDINSDPRVLGGRKLSITMHDAKFNGFLSIMGALQFMETDTLAIVGPQSAV 125 (953)
Q Consensus 46 ~~~~i~IG~l~~~~~~~g~~~~~a~~lAve~iN~~g~il~g~~l~l~~~D~~~~~~~a~~~a~~li~~~v~aiiGp~~S~ 125 (953)
..++++||++.-...+.-...+.|++ +++++.|.. .|..+++.+.|.++|+....+.+++|+++++++||+- .+.
T Consensus 5 ~~~~~~igi~q~~~hp~ld~~~~G~~---~~L~~~G~~-~g~nv~~~~~~a~gd~~~~~~~~~~l~~~~~DlIiai-~t~ 79 (302)
T 3lkv_A 5 MAKTAKVAVSQIVEHPALDATRQGLL---DGLKAKGYE-EGKNLEFDYKTAQGNPAIAVQIARQFVGENPDVLVGI-ATP 79 (302)
T ss_dssp --CCEEEEEEESCCCHHHHHHHHHHH---HHHHHTTCC-BTTTEEEEEEECTTCHHHHHHHHHHHHTTCCSEEEEE-SHH
T ss_pred hcCCceEEEEEeecChhHHHHHHHHH---HHHHhhCcc-cCCcEEEEEEeCCCCHHHHHHHHHHHHhcCCcEEEEc-CCH
Confidence 45789999986554332234455664 456667666 4889999999999999999999999999999999873 444
Q ss_pred hHHHHHHhhhhCCCcEEEeecCCCCCCC----C--CCCcEEEccCChHHHHHHHHHHHHHc--CCcEEEEEEecCc-ccc
Q 002211 126 MAHVLSHLANELQVPLLSFTALDPTLSP----L--QYPFFVQTAPNDLYLMSAIAEMVSYF--GWGEVIAIFNDDD-QGR 196 (953)
Q Consensus 126 ~a~av~~v~~~~~vP~Is~~at~~~ls~----~--~~p~~fr~~p~d~~~~~ai~~~l~~~--~w~~vaii~~d~~-~g~ 196 (953)
.+.+++.. ..++|+|-.+.++|.-.. . .-+++.-+. +........++++++ +.++|++||...+ ...
T Consensus 80 aa~a~~~~--~~~iPVVf~~v~dp~~~~l~~~~~~~g~nvtGv~--~~~~~~~~l~l~~~l~P~~k~vgvi~~~~~~~s~ 155 (302)
T 3lkv_A 80 TAQALVSA--TKTIPIVFTAVTDPVGAKLVKQLEQPGKNVTGLS--DLSPVEQHVELIKEILPNVKSIGVVYNPGEANAV 155 (302)
T ss_dssp HHHHHHHH--CSSSCEEEEEESCTTTTTSCSCSSSCCSSEEEEE--CCCCHHHHHHHHHHHSTTCCEEEEEECTTCHHHH
T ss_pred HHHHHHhh--cCCCCeEEEecCCcchhhhcccccCCCCcEEEEE--CCcCHHHHHHHHHHhCCCCCEEEEEeCCCcccHH
Confidence 55555443 457999987778775432 1 123454443 222234455666654 6899999996543 344
Q ss_pred chHHHHHHHHHhcCcEEEEEEecCCCCCCChHHHHHHHHHHhcCCceEEEEEcch
Q 002211 197 NGVTALGDKLAEIRCKISYKSALPPDQSVTETDVRNELVKVRMMEARVIVVHGYS 251 (953)
Q Consensus 197 ~~~~~l~~~l~~~g~~v~~~~~~~~~~~~~~~d~~~~l~~i~~~~~~vii~~~~~ 251 (953)
...+.+++.+++.|++++..... +..++...++.+. .+.|++++....
T Consensus 156 ~~~~~~~~~~~~~g~~~v~~~~~------~~~~~~~~~~~l~-~~~d~i~~~~d~ 203 (302)
T 3lkv_A 156 SLMELLKLSAAKHGIKLVEATAL------KSADVQSATQAIA-EKSDVIYALIDN 203 (302)
T ss_dssp HHHHHHHHHHHHTTCEEEEEECS------SGGGHHHHHHHHH-TTCSEEEECSCH
T ss_pred HHHHHHHHHHHHcCCEEEEEecC------ChHHHHHHHHhcc-CCeeEEEEeCCc
Confidence 56788889999999998754322 2456777777665 568888887654
No 95
>3gbv_A Putative LACI-family transcriptional regulator; NYSGXRC, PSI-II, 11231J, structur genomics, protein structure initiative; 2.20A {Bacteroides fragilis}
Probab=98.23 E-value=4.2e-05 Score=81.85 Aligned_cols=212 Identities=9% Similarity=0.019 Sum_probs=137.6
Q ss_pred CCceEEEeEEEecC--CCchhHHHHHHHHHHHHHhcCCCCCCCcEEEEEEe-cCCCChHHHHHHHHHHHhcCcEEEEc-c
Q 002211 46 KPEVLNVGAIFSFG--TVNGQVSRIAMKAAQDDINSDPRVLGGRKLSITMH-DAKFNGFLSIMGALQFMETDTLAIVG-P 121 (953)
Q Consensus 46 ~~~~i~IG~l~~~~--~~~g~~~~~a~~lAve~iN~~g~il~g~~l~l~~~-D~~~~~~~a~~~a~~li~~~v~aiiG-p 121 (953)
.....+||+++|.. ..+-.....+++-+.++.+ |+.+.+... ++..++..-.+....++++++.+||- |
T Consensus 5 ~~~~~~Igvi~~~~~~~~~~~~~~~gi~~~a~~~~-------g~~~~~~~~~~~~~~~~~~~~~i~~l~~~~vdgiii~~ 77 (304)
T 3gbv_A 5 SNKKYTFACLLPKHLEGEYWTDVQKGIREAVTTYS-------DFNISANITHYDPYDYNSFVATSQAVIEEQPDGVMFAP 77 (304)
T ss_dssp --CCEEEEEEEECCCTTSHHHHHHHHHHHHHHHTG-------GGCEEEEEEEECSSCHHHHHHHHHHHHTTCCSEEEECC
T ss_pred cCCcceEEEEecCCCCchHHHHHHHHHHHHHHHHH-------hCCeEEEEEcCCCCCHHHHHHHHHHHHhcCCCEEEECC
Confidence 34578999999974 5555666777777777641 466776655 45567777777778888888888774 4
Q ss_pred CChhhHHHHHHhhhhCCCcEEEeecCCCCCCCCCCCcEEEccCChHHHHHHHHHHHHHcCC--cEEEEEEec------Cc
Q 002211 122 QSAVMAHVLSHLANELQVPLLSFTALDPTLSPLQYPFFVQTAPNDLYLMSAIAEMVSYFGW--GEVIAIFND------DD 193 (953)
Q Consensus 122 ~~S~~a~av~~v~~~~~vP~Is~~at~~~ls~~~~p~~fr~~p~d~~~~~ai~~~l~~~~w--~~vaii~~d------~~ 193 (953)
..+.........+...++|+|......+.. +.+-.+..++...+..+++++...|. ++++++..+ ..
T Consensus 78 ~~~~~~~~~~~~~~~~~iPvV~~~~~~~~~-----~~~~~V~~D~~~~g~~a~~~l~~~g~~~~~i~~i~~~~~g~~~~~ 152 (304)
T 3gbv_A 78 TVPQYTKGFTDALNELGIPYIYIDSQIKDA-----PPLAFFGQNSHQSGYFAARMLMLLAVNDREIVIFRKIHEGVIGSN 152 (304)
T ss_dssp SSGGGTHHHHHHHHHHTCCEEEESSCCTTS-----CCSEEEECCHHHHHHHHHHHHHHHSTTCSEEEEEEEEBTTBCCCH
T ss_pred CChHHHHHHHHHHHHCCCeEEEEeCCCCCC-----CceEEEecChHHHHHHHHHHHHHHhCCCCeEEEEEecccCCccch
Confidence 444334445566677799999876443211 12344567777888889999988887 999999832 23
Q ss_pred cccchHHHHHHHHHhcCcE--EEEEEecCCCCCCChHHHHHHHHHHhc--CCceEEEEEcchhhHHHHHHHHHHcCCCCC
Q 002211 194 QGRNGVTALGDKLAEIRCK--ISYKSALPPDQSVTETDVRNELVKVRM--MEARVIVVHGYSRTGLMVFDVAQRLGMMDS 269 (953)
Q Consensus 194 ~g~~~~~~l~~~l~~~g~~--v~~~~~~~~~~~~~~~d~~~~l~~i~~--~~~~vii~~~~~~~~~~~~~~a~~~g~~~~ 269 (953)
......+.|.+++++.|.. +.....-... .+.....+.++.+ .++++|+..... +..+++++++.|+ .
T Consensus 153 ~~~~R~~gf~~~l~~~g~~~~~~~~~~~~~~----~~~~~~~~~~~l~~~~~~~ai~~~~d~--a~g~~~al~~~g~--~ 224 (304)
T 3gbv_A 153 QQESREIGFRQYMQEHHPACNILELNLHADL----NIEDSRMLDDFFREHPDVKHGITFNSK--VYIIGEYLQQRRK--S 224 (304)
T ss_dssp HHHHHHHHHHHHHHHHCTTSEEEEEEEESSC----SSCHHHHHHHHHHHCTTCCEEEESSSC--THHHHHHHHHTTC--C
T ss_pred hHHHHHHHHHHHHHhhCCCcEEEEeeecCCC----HHHHHHHHHHHHHhCCCeEEEEEcCcc--hHHHHHHHHHcCC--C
Confidence 4456788999999998754 3322111111 1222333444432 367887776654 7789999999998 4
Q ss_pred ceEEEEeC
Q 002211 270 GYVWIATT 277 (953)
Q Consensus 270 ~~~wi~~~ 277 (953)
+...++.|
T Consensus 225 di~vig~d 232 (304)
T 3gbv_A 225 DFSLIGYD 232 (304)
T ss_dssp SCEEEEES
T ss_pred CcEEEEeC
Confidence 44455544
No 96
>3c3k_A Alanine racemase; structural genomics, protein structure initiative, NEW YORK research center for structural genomics, nysgxrc; 1.99A {Actinobacillus succinogenes}
Probab=98.21 E-value=5.7e-05 Score=80.08 Aligned_cols=204 Identities=9% Similarity=-0.026 Sum_probs=132.0
Q ss_pred CceEEEeEEEec-CCCchhHHHHHHHHHHHHHhcCCCCCCCcEEEEEEecCCCChHHHHHHHHHHHhcCcEEEEccCChh
Q 002211 47 PEVLNVGAIFSF-GTVNGQVSRIAMKAAQDDINSDPRVLGGRKLSITMHDAKFNGFLSIMGALQFMETDTLAIVGPQSAV 125 (953)
Q Consensus 47 ~~~i~IG~l~~~-~~~~g~~~~~a~~lAve~iN~~g~il~g~~l~l~~~D~~~~~~~a~~~a~~li~~~v~aiiGp~~S~ 125 (953)
....+||++.|. +..+......+++-+.++. |+++.+ .++..++....+....++++++.+||......
T Consensus 6 ~~~~~Igvi~~~~~~~~~~~~~~gi~~~~~~~--------g~~~~~--~~~~~~~~~~~~~~~~l~~~~vdgiI~~~~~~ 75 (285)
T 3c3k_A 6 AKTGMLLVMVSNIANPFCAAVVKGIEKTAEKN--------GYRILL--CNTESDLARSRSCLTLLSGKMVDGVITMDALS 75 (285)
T ss_dssp -CCCEEEEEESCTTSHHHHHHHHHHHHHHHHT--------TCEEEE--EECTTCHHHHHHHTHHHHTTCCSEEEECCCGG
T ss_pred CCCCEEEEEeCCCCCchHHHHHHHHHHHHHHc--------CCEEEE--EeCCCCHHHHHHHHHHHHhCCCCEEEEeCCCC
Confidence 345689999985 3455556677777776662 566654 56667777766777778888999888643322
Q ss_pred hHHHHHHhhhhCCCcEEEeecCCCCCCCCCCCcEEEccCChHHHHHHHHHHHHHcCCcEEEEEEecC--ccccchHHHHH
Q 002211 126 MAHVLSHLANELQVPLLSFTALDPTLSPLQYPFFVQTAPNDLYLMSAIAEMVSYFGWGEVIAIFNDD--DQGRNGVTALG 203 (953)
Q Consensus 126 ~a~av~~v~~~~~vP~Is~~at~~~ls~~~~p~~fr~~p~d~~~~~ai~~~l~~~~w~~vaii~~d~--~~g~~~~~~l~ 203 (953)
....+ ..+. .++|+|......+ +.. +..+..++...+..+++++...|-+++++|.... .......+.|.
T Consensus 76 ~~~~~-~~l~-~~iPvV~~~~~~~---~~~---~~~V~~D~~~~g~~a~~~L~~~G~~~I~~i~~~~~~~~~~~R~~gf~ 147 (285)
T 3c3k_A 76 ELPEL-QNII-GAFPWVQCAEYDP---LST---VSSVSIDDVAASEYVVDQLVKSGKKRIALINHDLAYQYAQHRESGYL 147 (285)
T ss_dssp GHHHH-HHHH-TTSSEEEESSCCT---TSS---SCEEECCHHHHHHHHHHHHHHTTCCCEEEEECCTTSHHHHHHHHHHH
T ss_pred ChHHH-HHHh-cCCCEEEEccccC---CCC---CCEEEEChHHHHHHHHHHHHHcCCCeEEEEeCCCccccHHHHHHHHH
Confidence 22223 3345 8999998754332 112 2334566777778888988888999999998653 34556678899
Q ss_pred HHHHhcCcEEE-EEEecCCCCCCChHHHHHHHHH--HhcC--CceEEEEEcchhhHHHHHHHHHHcCCCCCceEEEE
Q 002211 204 DKLAEIRCKIS-YKSALPPDQSVTETDVRNELVK--VRMM--EARVIVVHGYSRTGLMVFDVAQRLGMMDSGYVWIA 275 (953)
Q Consensus 204 ~~l~~~g~~v~-~~~~~~~~~~~~~~d~~~~l~~--i~~~--~~~vii~~~~~~~~~~~~~~a~~~g~~~~~~~wi~ 275 (953)
+++++.|+++. ....+ . ..+....+.+ +.+. ++++|+. .+...+..+++++++.|+..++-+-+.
T Consensus 148 ~~l~~~g~~~~~~~~~~--~----~~~~~~~~~~~~~l~~~~~~~ai~~-~~d~~A~g~~~al~~~g~~vP~di~vv 217 (285)
T 3c3k_A 148 NRLKFHGLDYSRISYAE--N----LDYMAGKLATFSLLKSAVKPDAIFA-ISDVLAAGAIQALTESGLSIPQDVAVV 217 (285)
T ss_dssp HHHHHHTCCCCEEEECS--S----SSHHHHHHHHHHHHSSSSCCSEEEE-SSHHHHHHHHHHHHHTTCCTTTTCEEE
T ss_pred HHHHHcCCCceEeecCC--C----hHHHHHHHHHHHHHcCCCCCeEEEE-CCHHHHHHHHHHHHHcCCCCCCceEEE
Confidence 99999987643 11111 1 2333445555 5443 5777665 455667889999999998755444333
No 97
>2iks_A DNA-binding transcriptional dual regulator; escherichia coli structural genomics, PSI-2, protein structure initiative; 1.85A {Escherichia coli}
Probab=98.19 E-value=8.5e-05 Score=79.07 Aligned_cols=210 Identities=9% Similarity=-0.044 Sum_probs=136.2
Q ss_pred CceEEEeEEEec-CCCchhHHHHHHHHHHHHHhcCCCCCCCcEEEEEEecCCCChHHHHHHHHHHHhcCcEEEEccCChh
Q 002211 47 PEVLNVGAIFSF-GTVNGQVSRIAMKAAQDDINSDPRVLGGRKLSITMHDAKFNGFLSIMGALQFMETDTLAIVGPQSAV 125 (953)
Q Consensus 47 ~~~i~IG~l~~~-~~~~g~~~~~a~~lAve~iN~~g~il~g~~l~l~~~D~~~~~~~a~~~a~~li~~~v~aiiGp~~S~ 125 (953)
...-+||++.|. +..+-.....+++-+.++. |+++. +.++..++.........++++++.+||-.....
T Consensus 18 ~~~~~Ig~i~~~~~~~~~~~~~~gi~~~~~~~--------g~~~~--~~~~~~~~~~~~~~~~~l~~~~vdgii~~~~~~ 87 (293)
T 2iks_A 18 GRTRSIGLVIPDLENTSYTRIANYLERQARQR--------GYQLL--IACSEDQPDNEMRCIEHLLQRQVDAIIVSTSLP 87 (293)
T ss_dssp CCCCEEEEEESCSCSHHHHHHHHHHHHHHHHT--------TCEEE--EEECTTCHHHHHHHHHHHHHTTCSEEEECCSSC
T ss_pred CCCcEEEEEeCCCcCcHHHHHHHHHHHHHHHC--------CCEEE--EEcCCCCHHHHHHHHHHHHHcCCCEEEEeCCCC
Confidence 446789999985 3444455667777666652 55555 456667777777777788888898887533322
Q ss_pred hHHHHHHhhhhCCCcEEEeecCCCCCCCCCCCcEEEccCChHHHHHHHHHHHHHcCCcEEEEEEecC--ccccchHHHHH
Q 002211 126 MAHVLSHLANELQVPLLSFTALDPTLSPLQYPFFVQTAPNDLYLMSAIAEMVSYFGWGEVIAIFNDD--DQGRNGVTALG 203 (953)
Q Consensus 126 ~a~av~~v~~~~~vP~Is~~at~~~ls~~~~p~~fr~~p~d~~~~~ai~~~l~~~~w~~vaii~~d~--~~g~~~~~~l~ 203 (953)
....+...+...++|+|......+ + +.+..+..++...+..+++++...|.+++++|.... .......+.|.
T Consensus 88 ~~~~~~~~~~~~~iPvV~~~~~~~---~---~~~~~V~~d~~~~~~~a~~~L~~~G~~~I~~i~~~~~~~~~~~R~~Gf~ 161 (293)
T 2iks_A 88 PEHPFYQRWANDPFPIVALDRALD---R---EHFTSVVGADQDDAEMLAEELRKFPAETVLYLGALPELSVSFLREQGFR 161 (293)
T ss_dssp TTCHHHHTTTTSSSCEEEEESCCC---T---TTCEEEEECHHHHHHHHHHHHHTSCCSSEEEEEECTTSHHHHHHHHHHH
T ss_pred CcHHHHHHHHhCCCCEEEECCccC---c---CCCCEEEecCHHHHHHHHHHHHHCCCCEEEEEecCcccccHHHHHHHHH
Confidence 222334556678999998765332 1 123345567777788889998888999999998643 33456678899
Q ss_pred HHHHhcCcEEEEEEecCCCCCCChHHHHHHHHHHhcC--CceEEEEEcchhhHHHHHHHHHHcCCCCCceE-EEEeC
Q 002211 204 DKLAEIRCKISYKSALPPDQSVTETDVRNELVKVRMM--EARVIVVHGYSRTGLMVFDVAQRLGMMDSGYV-WIATT 277 (953)
Q Consensus 204 ~~l~~~g~~v~~~~~~~~~~~~~~~d~~~~l~~i~~~--~~~vii~~~~~~~~~~~~~~a~~~g~~~~~~~-wi~~~ 277 (953)
+++++.|....... ... .+..+-...+.++.+. ++++|+. .+...+..+++++++.|+..++-+ .++.|
T Consensus 162 ~~l~~~g~~~~~~~--~~~--~~~~~~~~~~~~~l~~~~~~~ai~~-~~d~~a~g~~~al~~~g~~vP~di~vvg~d 233 (293)
T 2iks_A 162 TAWKDDPREVHFLY--ANS--YEREAAAQLFEKWLETHPMPQALFT-TSFALLQGVMDVTLRRDGKLPSDLAIATFG 233 (293)
T ss_dssp HHHTTCCCCEEEEE--ESS--SCHHHHHHHHHHHTTTSCCCSEEEE-SSHHHHHHHHHHHHHHHSSCCSSCEEEEES
T ss_pred HHHHHcCCCccEEE--cCC--CChhhHHHHHHHHHhcCCCCCEEEE-CChHHHHHHHHHHHHcCCCCCCceEEEEEC
Confidence 99999987433221 111 1244445556666544 4677664 455567888999999998755433 44444
No 98
>3lft_A Uncharacterized protein; ABC, ATPase, cassette, L-Trp, PSI, MCSG, structural genomics center for structural genomics; HET: MSE TRP; 1.35A {Streptococcus pneumoniae}
Probab=98.19 E-value=0.00013 Score=77.75 Aligned_cols=200 Identities=9% Similarity=0.054 Sum_probs=132.0
Q ss_pred eEEEeEEEecCCCchhHHHHHHHHHHHHHhcCCCCCCCcEEEEEEecCCCChHHHHHHHHHHHhcCcEEEEccCChhhHH
Q 002211 49 VLNVGAIFSFGTVNGQVSRIAMKAAQDDINSDPRVLGGRKLSITMHDAKFNGFLSIMGALQFMETDTLAIVGPQSAVMAH 128 (953)
Q Consensus 49 ~i~IG~l~~~~~~~g~~~~~a~~lAve~iN~~g~il~g~~l~l~~~D~~~~~~~a~~~a~~li~~~v~aiiGp~~S~~a~ 128 (953)
..+||++-..+.++-.....|++-++++ .|- .|+++.+.+.|+++++.+......+|.+++|++||...+ ....
T Consensus 2 ~~~Igvi~~~~~p~~~~i~~gi~~~l~~---~gy--~g~~v~l~~~~~~~~~~~~~~~~~~l~~~~vDgII~~~~-~~~~ 75 (295)
T 3lft_A 2 NAKIGVLQFVSHPSLDLIYKGIQDGLAE---EGY--KDDQVKIDFMNSEGDQSKVATMSKQLVANGNDLVVGIAT-PAAQ 75 (295)
T ss_dssp CEEEEEEECSCCHHHHHHHHHHHHHHHH---TTC--CGGGEEEEEEECTTCHHHHHHHHHHHTTSSCSEEEEESH-HHHH
T ss_pred ceEEEEEEccCChhHHHHHHHHHHHHHH---cCC--CCCceEEEEecCCCCHHHHHHHHHHHHhcCCCEEEECCc-HHHH
Confidence 4679988333444444555666655444 433 366899999999999999888888898889999887532 2233
Q ss_pred HHHHhhhhCCCcEEEeecCCCCCCC------CCCCcEEEccCChHHHHHHHHHHHHHc--CCcEEEEEEecCc-cccchH
Q 002211 129 VLSHLANELQVPLLSFTALDPTLSP------LQYPFFVQTAPNDLYLMSAIAEMVSYF--GWGEVIAIFNDDD-QGRNGV 199 (953)
Q Consensus 129 av~~v~~~~~vP~Is~~at~~~ls~------~~~p~~fr~~p~d~~~~~ai~~~l~~~--~w~~vaii~~d~~-~g~~~~ 199 (953)
.+.. ...++|+|..+..+|.... ...+++..+. +..-+...++++.+. |-+++++|+.+.. .++...
T Consensus 76 ~~~~--~~~~iPvV~~~~~~~~~~~~v~~~~~~~~~~~gv~--~~~~~~~~~~~l~~~~pg~~~I~~i~~~~~~~~~~r~ 151 (295)
T 3lft_A 76 GLAS--ATKDLPVIMAAITDPIGANLVKDLKKPGGNVTGVS--DHNPAQQQVELIKALTPNVKTIGALYSSSEDNSKTQV 151 (295)
T ss_dssp HHHH--HCSSSCEEEESCSCTTTTTSCSCSSCCCSSEEEEE--ECCCHHHHHHHHHHHCTTCCEEEEEEETTCHHHHHHH
T ss_pred HHHH--cCCCCCEEEEeccChhhcCccccccCCCCcEEEEE--CCccHHHHHHHHHHhCCCCcEEEEEeCCCCcchHHHH
Confidence 3332 2478999987655543221 0112343333 233356677888777 8999999997644 355667
Q ss_pred HHHHHHHHhcCcEEEEEEecCCCCCCChHHHHHHHHHHhcCCceEEEEEcchhhHHHHHHHHHHcCC
Q 002211 200 TALGDKLAEIRCKISYKSALPPDQSVTETDVRNELVKVRMMEARVIVVHGYSRTGLMVFDVAQRLGM 266 (953)
Q Consensus 200 ~~l~~~l~~~g~~v~~~~~~~~~~~~~~~d~~~~l~~i~~~~~~vii~~~~~~~~~~~~~~a~~~g~ 266 (953)
+.+++++++.|+++...... . .++....++++. .++++|++..+ ..+...++++.+.|.
T Consensus 152 ~g~~~al~~~gi~~~~~~~~--~----~~~~~~~~~~l~-~~~dai~~~~D-~~a~g~~~~l~~~~~ 210 (295)
T 3lft_A 152 EEFKAYAEKAGLTVETFAVP--S----TNEIASTVTVMT-SKVDAIWVPID-NTIASGFPTVVSSNQ 210 (295)
T ss_dssp HHHHHHHHHTTCEEEEEEES--S----GGGHHHHHHHHT-TTCSEEEECSC-HHHHHTHHHHHHHTT
T ss_pred HHHHHHHHHcCCEEEEEecC--C----HHHHHHHHHHHH-hcCCEEEECCc-hhHHHHHHHHHHHHH
Confidence 89999999999988654332 2 346677788876 47898887654 345556677777774
No 99
>3h75_A Periplasmic sugar-binding domain protein; protein structure initiative II (PSI II), sugar binding PROT alpha/beta fold; 1.60A {Pseudomonas fluorescens pf-5}
Probab=98.17 E-value=0.00018 Score=78.79 Aligned_cols=214 Identities=12% Similarity=0.019 Sum_probs=142.0
Q ss_pred eEEEeEEEecC-C-CchhHHHHHHHHHHHHHhcCCCCCCCcEEEEEEecCCCChHHHHHHHHHHHh--cCcEEEEccCCh
Q 002211 49 VLNVGAIFSFG-T-VNGQVSRIAMKAAQDDINSDPRVLGGRKLSITMHDAKFNGFLSIMGALQFME--TDTLAIVGPQSA 124 (953)
Q Consensus 49 ~i~IG~l~~~~-~-~~g~~~~~a~~lAve~iN~~g~il~g~~l~l~~~D~~~~~~~a~~~a~~li~--~~v~aiiGp~~S 124 (953)
..+||++.|-. . .+-.....+++-+.++. |+++.+ .++..++..-.+...+++. +++.+||-....
T Consensus 3 ~~~Ig~i~p~~~~~~f~~~~~~g~~~~a~~~--------g~~~~~--~~~~~~~~~~~~~i~~~i~~~~~vDgiIi~~~~ 72 (350)
T 3h75_A 3 LTSVVFLNPGNSTETFWVSYSQFMQAAARDL--------GLDLRI--LYAERDPQNTLQQARELFQGRDKPDYLMLVNEQ 72 (350)
T ss_dssp CCEEEEEECSCTTCHHHHHHHHHHHHHHHHH--------TCEEEE--EECTTCHHHHHHHHHHHHHSSSCCSEEEEECCS
T ss_pred CCEEEEECCCCCCChHHHHHHHHHHHHHHHc--------CCeEEE--EECCCCHHHHHHHHHHHHhcCCCCCEEEEeCch
Confidence 46899999974 3 45567778888888775 455554 4777888888888899998 588877753333
Q ss_pred hhHHHHHHhhhhCCCcEEEeecCCCCCCC-------CCCC-cEEEccCChHHHHHHHHHHHHHcC------C-cEEEEEE
Q 002211 125 VMAHVLSHLANELQVPLLSFTALDPTLSP-------LQYP-FFVQTAPNDLYLMSAIAEMVSYFG------W-GEVIAIF 189 (953)
Q Consensus 125 ~~a~av~~v~~~~~vP~Is~~at~~~ls~-------~~~p-~~fr~~p~d~~~~~ai~~~l~~~~------w-~~vaii~ 189 (953)
.....+...+...++|+|......+.... ..|+ ++..+..++...+..+++++...+ - ++++++.
T Consensus 73 ~~~~~~~~~~~~~giPvV~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~D~~~~g~~a~~~L~~~g~~~~~g~~~~i~~i~ 152 (350)
T 3h75_A 73 YVAPQILRLSQGSGIKLFIVNSPLTLDQRELIGQSRQNYSDWIGSMVGDDEEAGYRMLKELLHKLGPVPAGHGIELLAFS 152 (350)
T ss_dssp SHHHHHHHHHTTSCCEEEEEESCCCTTTC------------CEEEEECCHHHHHHHHHHHHHHHHCCCCSSCCEEEEEEE
T ss_pred hhHHHHHHHHHhCCCcEEEEcCCCChHHHhhhcCCchhccceeeeecCChHHHHHHHHHHHHHHhhhhcCCCCceEEEEe
Confidence 44556667788899999998765543321 1122 256677788888888999977766 4 7999997
Q ss_pred ec--CccccchHHHHHHHHHhcCc-EEEEEEecCCCCCCChHHHHHHHHHHhcCC--ceEEEEEcchhhHHHHHHHHHHc
Q 002211 190 ND--DDQGRNGVTALGDKLAEIRC-KISYKSALPPDQSVTETDVRNELVKVRMME--ARVIVVHGYSRTGLMVFDVAQRL 264 (953)
Q Consensus 190 ~d--~~~g~~~~~~l~~~l~~~g~-~v~~~~~~~~~~~~~~~d~~~~l~~i~~~~--~~vii~~~~~~~~~~~~~~a~~~ 264 (953)
.. ........+.|.+++++.|. ++... +... .+.+.....+.++.+.. +++|+ +.+...+..++++++++
T Consensus 153 g~~~~~~~~~R~~Gf~~~l~~~~~~~~~~~--~~~~--~~~~~~~~~~~~~L~~~~~~~aI~-~~~d~~a~g~~~al~~~ 227 (350)
T 3h75_A 153 GLKVTPAAQLRERGLRRALAEHPQVHLRQL--VYGE--WNRERAYRQAQQLLKRYPKTQLVW-SANDEMALGAMQAAREL 227 (350)
T ss_dssp SCTTSHHHHHHHHHHHHHHHHCTTEEEEEE--EECT--TCHHHHHHHHHHHHHHCTTEEEEE-ESSHHHHHHHHHHHHHT
T ss_pred CCCCCHHHHHHHHHHHHHHHHCCCeEEEEE--eeCC--CcHHHHHHHHHHHHHhCCCcCEEE-ECChHHHHHHHHHHHHc
Confidence 54 23445567899999999886 22222 2222 22455555566655444 45543 45566778899999999
Q ss_pred CCCCCc-eEEEEeC
Q 002211 265 GMMDSG-YVWIATT 277 (953)
Q Consensus 265 g~~~~~-~~wi~~~ 277 (953)
|+..++ ...++.|
T Consensus 228 G~~vP~di~vvg~d 241 (350)
T 3h75_A 228 GRKPGTDLLFSGVN 241 (350)
T ss_dssp TCCBTTTBEEEEES
T ss_pred CCCCCCCeEEEecC
Confidence 987544 3344433
No 100
>3l6u_A ABC-type sugar transport system periplasmic compo; structural genomics, nysgrc, target 11006S, PSI-2, protein S initiative; 1.90A {Exiguobacterium sibiricum}
Probab=98.16 E-value=0.00011 Score=78.03 Aligned_cols=209 Identities=10% Similarity=0.025 Sum_probs=138.3
Q ss_pred CceEEEeEEEecC-CCchhHHHHHHHHHHHHHhcCCCCCCCcEEEEEEecCCCChHHHHHHHHHHHhcCcEEEEc-cCCh
Q 002211 47 PEVLNVGAIFSFG-TVNGQVSRIAMKAAQDDINSDPRVLGGRKLSITMHDAKFNGFLSIMGALQFMETDTLAIVG-PQSA 124 (953)
Q Consensus 47 ~~~i~IG~l~~~~-~~~g~~~~~a~~lAve~iN~~g~il~g~~l~l~~~D~~~~~~~a~~~a~~li~~~v~aiiG-p~~S 124 (953)
...-+||++.|-. ..+-.....+++-+.++. |+++. +.++..++....+....++++++.+||- |...
T Consensus 6 ~~~~~Ig~i~~~~~~~~~~~~~~gi~~~a~~~--------g~~~~--~~~~~~~~~~~~~~~~~l~~~~vdgiI~~~~~~ 75 (293)
T 3l6u_A 6 PKRNIVGFTIVNDKHEFAQRLINAFKAEAKAN--------KYEAL--VATSQNSRISEREQILEFVHLKVDAIFITTLDD 75 (293)
T ss_dssp ---CEEEEEESCSCSHHHHHHHHHHHHHHHHT--------TCEEE--EEECSSCHHHHHHHHHHHHHTTCSEEEEECSCT
T ss_pred CCCcEEEEEEecCCcHHHHHHHHHHHHHHHHc--------CCEEE--EECCCCCHHHHHHHHHHHHHcCCCEEEEecCCh
Confidence 4567899999863 444456667777776663 55554 5577788888888888898888888774 3333
Q ss_pred hhHHHHHHhhhhCCCcEEEeecCCCCCCCCCCCcEEEccCChHHHHHHHHHHHHH-c-CCc-----EEEEEEec--Cccc
Q 002211 125 VMAHVLSHLANELQVPLLSFTALDPTLSPLQYPFFVQTAPNDLYLMSAIAEMVSY-F-GWG-----EVIAIFND--DDQG 195 (953)
Q Consensus 125 ~~a~av~~v~~~~~vP~Is~~at~~~ls~~~~p~~fr~~p~d~~~~~ai~~~l~~-~-~w~-----~vaii~~d--~~~g 195 (953)
.........+.+.++|+|......+. .+.+..+..++...+..+++++.. + |-+ ++++|... ....
T Consensus 76 ~~~~~~~~~~~~~~iPvV~~~~~~~~-----~~~~~~V~~D~~~~g~~~~~~l~~~~~g~~~~~~~~i~~i~g~~~~~~~ 150 (293)
T 3l6u_A 76 VYIGSAIEEAKKAGIPVFAIDRMIRS-----DAVVSSITSNNQMIGEQLASYIKNELIKQTGRSTGRIVEITGTANVYTT 150 (293)
T ss_dssp TTTHHHHHHHHHTTCCEEEESSCCCC-----TTCSEEEEECHHHHHHHHHHHHHHHHHHHHSCSCEEEEEEECSTTCHHH
T ss_pred HHHHHHHHHHHHcCCCEEEecCCCCC-----CcceeEEecCHHHHHHHHHHHHHHHhccCCCCCCceEEEEECCCCCchH
Confidence 33334556667789999987654332 123345567777888888888776 5 767 99999843 3345
Q ss_pred cchHHHHHHHHHhc-CcEEEEEEecCCCCCCChHHHHHHHHHHhcC--CceEEEEEcchhhHHHHHHHHHHcCCCCCceE
Q 002211 196 RNGVTALGDKLAEI-RCKISYKSALPPDQSVTETDVRNELVKVRMM--EARVIVVHGYSRTGLMVFDVAQRLGMMDSGYV 272 (953)
Q Consensus 196 ~~~~~~l~~~l~~~-g~~v~~~~~~~~~~~~~~~d~~~~l~~i~~~--~~~vii~~~~~~~~~~~~~~a~~~g~~~~~~~ 272 (953)
....+.|.+++++. |+++.....-.. +..+....+.++.+. ++++|+ +.+...+..++++++++|+. +..
T Consensus 151 ~~R~~gf~~~l~~~~g~~~~~~~~~~~----~~~~~~~~~~~~l~~~~~~~ai~-~~~d~~a~g~~~al~~~g~~--di~ 223 (293)
T 3l6u_A 151 NERHRGFLKGIENEPTLSIVDSVSGNY----DPVTSERVMRQVIDSGIPFDAVY-CHNDDIAMGVLEALKKAKIS--GKI 223 (293)
T ss_dssp HHHHHHHHHHHTTCTTEEEEEEEECTT----CHHHHHHHHHHHHHTTCCCSEEE-ESSHHHHHHHHHHHHHTTCC--CCE
T ss_pred HHHHHHHHHHHHhCCCcEEeeeccCCC----CHHHHHHHHHHHHHhCCCCCEEE-ECCchHHHHHHHHHHhCCCC--CeE
Confidence 56688999999999 988765432222 245555566666554 456654 44556678899999999975 333
Q ss_pred EEEeC
Q 002211 273 WIATT 277 (953)
Q Consensus 273 wi~~~ 277 (953)
.++.|
T Consensus 224 vig~d 228 (293)
T 3l6u_A 224 VVGID 228 (293)
T ss_dssp EEEEE
T ss_pred EEEec
Confidence 44433
No 101
>2h0a_A TTHA0807, transcriptional regulator; repressor, structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.80A {Thermus thermophilus}
Probab=98.15 E-value=8.2e-06 Score=86.14 Aligned_cols=203 Identities=12% Similarity=0.030 Sum_probs=120.5
Q ss_pred EEeEEEec-CCCchhHHHHHHHHHHHHHhcCCCCCCCcEEEEEEecCCCChHHHHHHHHHHHhcCcEEEEccCChhhHHH
Q 002211 51 NVGAIFSF-GTVNGQVSRIAMKAAQDDINSDPRVLGGRKLSITMHDAKFNGFLSIMGALQFMETDTLAIVGPQSAVMAHV 129 (953)
Q Consensus 51 ~IG~l~~~-~~~~g~~~~~a~~lAve~iN~~g~il~g~~l~l~~~D~~~~~~~a~~~a~~li~~~v~aiiGp~~S~~a~a 129 (953)
+||++.|- +..+-.....+++-+.++. |+++. +.++..++....+....++++++.+||....+... .
T Consensus 1 ~Igvi~~~~~~~~~~~~~~gi~~~~~~~--------g~~~~--~~~~~~~~~~~~~~~~~l~~~~vdgiI~~~~~~~~-~ 69 (276)
T 2h0a_A 1 TVSVLLPFVATEFYRRLVEGIEGVLLEQ--------RYDLA--LFPILSLARLKRYLENTTLAYLTDGLILASYDLTE-R 69 (276)
T ss_dssp CEEEEECCSCCHHHHHHHHHHHHHHGGG--------TCEEE--ECCCCSCCCCC---------CCCSEEEEESCCCC---
T ss_pred CEEEEECCCCCHHHHHHHHHHHHHHHHC--------CCEEE--EEeCCCchhhHHHHHHHHHhCCCCEEEEecCCCCH-H
Confidence 48999885 3444445566666555542 45554 45666565555555667777888887753332222 3
Q ss_pred HHHhhhhCCCcEEEeecCCCCCCCCCCCcEEEccCChHHHHHHHHHHHHHcCCcEEEEEEecC-c-----ccc-chHHHH
Q 002211 130 LSHLANELQVPLLSFTALDPTLSPLQYPFFVQTAPNDLYLMSAIAEMVSYFGWGEVIAIFNDD-D-----QGR-NGVTAL 202 (953)
Q Consensus 130 v~~v~~~~~vP~Is~~at~~~ls~~~~p~~fr~~p~d~~~~~ai~~~l~~~~w~~vaii~~d~-~-----~g~-~~~~~l 202 (953)
....+...++|+|......+ + +..+..++...+..+++++...|-++++++..+. . ... ...+.|
T Consensus 70 ~~~~~~~~~iPvV~~~~~~~-------~-~~~V~~d~~~~~~~a~~~L~~~G~~~i~~i~~~~~~~~~~~~~~~~R~~gf 141 (276)
T 2h0a_A 70 FEEGRLPTERPVVLVDAQNP-------R-YDSVYLDNRLGGRLAGAYLARFPGPIFAIAVEEEPDRAFRRTVFAERMAGF 141 (276)
T ss_dssp ----CCSCSSCEEEESSCCT-------T-SEEEEECSHHHHHHHHHHHTTSSSCEEEEEECCSCCC---CCHHHHHHHHH
T ss_pred HHHHHhhcCCCEEEEeccCC-------C-CCEEEEccHHHHHHHHHHHHHcCCCeEEEEecCcccccccchhHHHHHHHH
Confidence 34455678999998754332 1 3445567777888899998888999999998653 2 445 668899
Q ss_pred HHHHHhcCcEEEEEEecCCCCCCChHHHHHHHHHHhcC--CceEEEEEcchhhHHHHHHHHHHcCCCCCceEEEE
Q 002211 203 GDKLAEIRCKISYKSALPPDQSVTETDVRNELVKVRMM--EARVIVVHGYSRTGLMVFDVAQRLGMMDSGYVWIA 275 (953)
Q Consensus 203 ~~~l~~~g~~v~~~~~~~~~~~~~~~d~~~~l~~i~~~--~~~vii~~~~~~~~~~~~~~a~~~g~~~~~~~wi~ 275 (953)
.+.+++.|+.+.....+... .+..+-...+.++.+. ++++|+ +.+...+..+++++++.|+..++-+.+.
T Consensus 142 ~~~l~~~g~~~~~~~~~~~~--~~~~~~~~~~~~~l~~~~~~~ai~-~~~d~~a~g~~~al~~~g~~vP~di~vv 213 (276)
T 2h0a_A 142 QEALKEAGRPFSPDRLYITR--HSQEGGRLALRHFLEKASPPLNVF-AGADQVALGVLEEAVRLGLTPGRDVRVL 213 (276)
T ss_dssp HHHHHHTTCCCCGGGEEEEC--SSHHHHHHHHHHHHTTCCSSEEEE-CSSHHHHHHHHHHHHTTSCTTTTSEEEE
T ss_pred HHHHHHcCCCCChHHeeecC--CChHHHHHHHHHHHhCCCCCCEEE-ECCcHHHHHHHHHHHHcCCCCCCCeEEE
Confidence 99999998764211011111 1244445556666554 477776 5566778889999999998765544443
No 102
>2ioy_A Periplasmic sugar-binding protein; ribose binding protein, thermophilic proteins; HET: RIP; 1.90A {Thermoanaerobacter tengcongensis}
Probab=98.15 E-value=0.0002 Score=75.73 Aligned_cols=205 Identities=11% Similarity=0.099 Sum_probs=130.8
Q ss_pred EEeEEEecC-CCchhHHHHHHHHHHHHHhcCCCCCCCcEEEEEEecCCCChHHHHHHHHHHHhcCcEEEEc-cCChhhHH
Q 002211 51 NVGAIFSFG-TVNGQVSRIAMKAAQDDINSDPRVLGGRKLSITMHDAKFNGFLSIMGALQFMETDTLAIVG-PQSAVMAH 128 (953)
Q Consensus 51 ~IG~l~~~~-~~~g~~~~~a~~lAve~iN~~g~il~g~~l~l~~~D~~~~~~~a~~~a~~li~~~v~aiiG-p~~S~~a~ 128 (953)
+||++.|-. ..+......+++.+.++. |+++. +.++..++.........+++++|.+||- |..+....
T Consensus 3 ~Igvi~~~~~~~f~~~~~~gi~~~~~~~--------g~~~~--~~~~~~~~~~~~~~i~~l~~~~vdgiIi~~~~~~~~~ 72 (283)
T 2ioy_A 3 TIGLVISTLNNPFFVTLKNGAEEKAKEL--------GYKII--VEDSQNDSSKELSNVEDLIQQKVDVLLINPVDSDAVV 72 (283)
T ss_dssp EEEEEESCSSSHHHHHHHHHHHHHHHHH--------TCEEE--EEECTTCHHHHHHHHHHHHHTTCSEEEECCSSTTTTH
T ss_pred EEEEEecCCCCHHHHHHHHHHHHHHHhc--------CcEEE--EecCCCCHHHHHHHHHHHHHcCCCEEEEeCCchhhhH
Confidence 689998853 445556677888777764 45554 4577778877777788888888988764 44433322
Q ss_pred HHHHhhhhCCCcEEEeecCCCCCCCCCCCcEEEccCChHHHHHHHHHHHHHc-C-CcEEEEEEecC--ccccchHHHHHH
Q 002211 129 VLSHLANELQVPLLSFTALDPTLSPLQYPFFVQTAPNDLYLMSAIAEMVSYF-G-WGEVIAIFNDD--DQGRNGVTALGD 204 (953)
Q Consensus 129 av~~v~~~~~vP~Is~~at~~~ls~~~~p~~fr~~p~d~~~~~ai~~~l~~~-~-w~~vaii~~d~--~~g~~~~~~l~~ 204 (953)
.....+...++|+|......+ +. +.+..+..++...+..++++|... | -+++++|.... .......+.|.+
T Consensus 73 ~~~~~~~~~~iPvV~~~~~~~---~~--~~~~~V~~D~~~~g~~a~~~L~~~~gg~~~I~~i~g~~~~~~~~~R~~Gf~~ 147 (283)
T 2ioy_A 73 TAIKEANSKNIPVITIDRSAN---GG--DVVCHIASDNVKGGEMAAEFIAKALKGKGNVVELEGIPGASAARDRGKGFDE 147 (283)
T ss_dssp HHHHHHHHTTCCEEEESSCCS---SS--CCSEEEEECHHHHHHHHHHHHHHHTTTCEEEEEEECCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHCCCeEEEecCCCC---Cc--ceeEEEecChHHHHHHHHHHHHHHcCCCceEEEEECCCCCccHHHHHHHHHH
Confidence 334556678999998754321 11 122334456666778888887766 5 89999998543 233456788999
Q ss_pred HHHhc-CcEEEEEEecCCCCCCChHHHHHHHHHHhcC--CceEEEEEcchhhHHHHHHHHHHcCCCCCceEEEEeC
Q 002211 205 KLAEI-RCKISYKSALPPDQSVTETDVRNELVKVRMM--EARVIVVHGYSRTGLMVFDVAQRLGMMDSGYVWIATT 277 (953)
Q Consensus 205 ~l~~~-g~~v~~~~~~~~~~~~~~~d~~~~l~~i~~~--~~~vii~~~~~~~~~~~~~~a~~~g~~~~~~~wi~~~ 277 (953)
++++. |+++.....-.. +.++-...++++.+. ++++|+ +.+...+..++++++++|+ .+...++.|
T Consensus 148 al~~~~~~~~~~~~~~~~----~~~~~~~~~~~ll~~~~~~~ai~-~~nD~~A~g~~~al~~~G~--~di~viG~D 216 (283)
T 2ioy_A 148 AIAKYPDIKIVAKQAADF----DRSKGLSVMENILQAQPKIDAVF-AQNDEMALGAIKAIEAANR--QGIIVVGFD 216 (283)
T ss_dssp HHTTCTTEEEEEEEECTT----CHHHHHHHHHHHHHHCSCCCEEE-ESSHHHHHHHHHHHHHTTC--CCCEEEEEE
T ss_pred HHHhCCCCEEEeeccCCC----CHHHHHHHHHHHHHhCCCccEEE-ECCchHHHHHHHHHHHCCC--CCcEEEEeC
Confidence 99988 887654322111 244444555555443 456554 4455678889999999997 344444443
No 103
>2o20_A Catabolite control protein A; CCPA, transcriptional regulator, helix-turn-helix, transcrip; 1.90A {Lactococcus lactis}
Probab=98.14 E-value=4.9e-05 Score=82.62 Aligned_cols=209 Identities=9% Similarity=0.013 Sum_probs=133.7
Q ss_pred CceEEEeEEEec-CCCchhHHHHHHHHHHHHHhcCCCCCCCcEEEEEEecCCCChHHHHHHHHHHHhcCcEEEEccCChh
Q 002211 47 PEVLNVGAIFSF-GTVNGQVSRIAMKAAQDDINSDPRVLGGRKLSITMHDAKFNGFLSIMGALQFMETDTLAIVGPQSAV 125 (953)
Q Consensus 47 ~~~i~IG~l~~~-~~~~g~~~~~a~~lAve~iN~~g~il~g~~l~l~~~D~~~~~~~a~~~a~~li~~~v~aiiGp~~S~ 125 (953)
....+||++.|. +..+......+++-+.++. |+++.+ .++..++.........++++++.+||......
T Consensus 61 ~~~~~Ig~i~~~~~~~~~~~~~~gi~~~~~~~--------g~~~~~--~~~~~~~~~~~~~~~~l~~~~vdgiI~~~~~~ 130 (332)
T 2o20_A 61 KRTTTVGVILPTITSTYFAAITRGVDDIASMY--------KYNMIL--ANSDNDVEKEEKVLETFLSKQVDGIVYMGSSL 130 (332)
T ss_dssp -CCCEEEEEESCTTCHHHHHHHHHHHHHHHHT--------TCEEEE--EECTTCHHHHHHHHHHHHHTTCSEEEECSSCC
T ss_pred CCCCEEEEEeCCCCCcHHHHHHHHHHHHHHHc--------CCEEEE--EECCCChHHHHHHHHHHHhCCCCEEEEeCCCC
Confidence 346789999985 3445556677777776662 566654 56667777777777778888999888533221
Q ss_pred hHHHHHHhhhhCCCcEEEeecCCCCCCCCCCCcEEEccCChHHHHHHHHHHHHHcCCcEEEEEEecC--ccccchHHHHH
Q 002211 126 MAHVLSHLANELQVPLLSFTALDPTLSPLQYPFFVQTAPNDLYLMSAIAEMVSYFGWGEVIAIFNDD--DQGRNGVTALG 203 (953)
Q Consensus 126 ~a~av~~v~~~~~vP~Is~~at~~~ls~~~~p~~fr~~p~d~~~~~ai~~~l~~~~w~~vaii~~d~--~~g~~~~~~l~ 203 (953)
.... ...+...++|+|......+ +...+ .+..++...+..+++++...|.+++++|..+. .......+.|.
T Consensus 131 ~~~~-~~~l~~~~iPvV~~~~~~~---~~~~~---~V~~D~~~~~~~a~~~L~~~G~~~I~~i~~~~~~~~~~~R~~Gf~ 203 (332)
T 2o20_A 131 DEKI-RTSLKNSRTPVVLVGTIDG---DKEIP---SVNIDYHLAAYQSTKKLIDSGNKKIAYIMGSLKDVENTERMVGYQ 203 (332)
T ss_dssp CHHH-HHHHHHHCCCEEEESCCCT---TSCSC---EEECCHHHHHHHHHHHHHHTTCSSEEEECSCTTSHHHHHHHHHHH
T ss_pred CHHH-HHHHHhCCCCEEEEccccC---CCCCC---EEEeChHHHHHHHHHHHHHCCCCeEEEEeCCcccccHHHHHHHHH
Confidence 2222 3334567999998754332 11222 34566667778888998888999999998653 33456678899
Q ss_pred HHHHhcCcEEEEEEecCCCCCCChHHHHHHHHHHhcCCceEEEEEcchhhHHHHHHHHHHcCCCCCceEEEE
Q 002211 204 DKLAEIRCKISYKSALPPDQSVTETDVRNELVKVRMMEARVIVVHGYSRTGLMVFDVAQRLGMMDSGYVWIA 275 (953)
Q Consensus 204 ~~l~~~g~~v~~~~~~~~~~~~~~~d~~~~l~~i~~~~~~vii~~~~~~~~~~~~~~a~~~g~~~~~~~wi~ 275 (953)
+++++.|+.+.....+..+ .+..+-...+.++.+.++++|+. .+...+..+++++++.|+..++-+-+.
T Consensus 204 ~al~~~g~~~~~~~~~~~~--~~~~~~~~~~~~ll~~~~~ai~~-~~d~~A~g~~~al~~~G~~vP~disvi 272 (332)
T 2o20_A 204 EALLEANIEFDENLVFEGN--YSYEQGKALAERLLERGATSAVV-SHDTVAVGLLSAMMDKGVKVPEDFEII 272 (332)
T ss_dssp HHHHHTTCCCCGGGEECSC--CSHHHHHHHHHHHHHTTCCEEEE-SCHHHHHHHHHHHHHTTCCTTTTCEEE
T ss_pred HHHHHcCCCCChhhEEeCC--CCHHHHHHHHHHHhccCCCEEEE-CChHHHHHHHHHHHHcCCCCccCEEEE
Confidence 9999999764321112211 12333334455543338888776 455667889999999998755444333
No 104
>3g1w_A Sugar ABC transporter; sugar-binding protein, bacillus halod target 11229F, transport protein, structural genomics; 2.02A {Bacillus halodurans c-125}
Probab=98.14 E-value=0.00021 Score=76.38 Aligned_cols=211 Identities=13% Similarity=-0.022 Sum_probs=139.7
Q ss_pred eEEEeEEEecC-CCchhHHHHHHHHHHHHHhcCCCCCCCcEEEEEEecCCCChHHHHHHHHHHHhcCcEEEEc-cCChhh
Q 002211 49 VLNVGAIFSFG-TVNGQVSRIAMKAAQDDINSDPRVLGGRKLSITMHDAKFNGFLSIMGALQFMETDTLAIVG-PQSAVM 126 (953)
Q Consensus 49 ~i~IG~l~~~~-~~~g~~~~~a~~lAve~iN~~g~il~g~~l~l~~~D~~~~~~~a~~~a~~li~~~v~aiiG-p~~S~~ 126 (953)
.-+||++.|.. ..+-.....+++-+.++. |+++.+. .++..++..-.+....++++++.+||- |..+..
T Consensus 4 ~~~I~~i~~~~~~~~~~~~~~gi~~~a~~~--------g~~~~~~-~~~~~~~~~~~~~i~~l~~~~vdgiIi~~~~~~~ 74 (305)
T 3g1w_A 4 NETYMMITFQSGMDYWKRCLKGFEDAAQAL--------NVTVEYR-GAAQYDIQEQITVLEQAIAKNPAGIAISAIDPVE 74 (305)
T ss_dssp -CEEEEEESSTTSTHHHHHHHHHHHHHHHH--------TCEEEEE-ECSSSCHHHHHHHHHHHHHHCCSEEEECCSSTTT
T ss_pred CceEEEEEccCCChHHHHHHHHHHHHHHHc--------CCEEEEe-CCCcCCHHHHHHHHHHHHHhCCCEEEEcCCCHHH
Confidence 35788888764 455556778888888774 5666542 477788888888888888889888773 444443
Q ss_pred HHHHHHhhhhCCCcEEEeecCCCCCCCCCCCcEEEccCChHHHHHHHHHHHHHc--CCcEEEEEEecC-ccccchHHHHH
Q 002211 127 AHVLSHLANELQVPLLSFTALDPTLSPLQYPFFVQTAPNDLYLMSAIAEMVSYF--GWGEVIAIFNDD-DQGRNGVTALG 203 (953)
Q Consensus 127 a~av~~v~~~~~vP~Is~~at~~~ls~~~~p~~fr~~p~d~~~~~ai~~~l~~~--~w~~vaii~~d~-~~g~~~~~~l~ 203 (953)
.......+.+.++|+|......+. . +.+..+..++...+..+++++... |-++++++.... .......+.|.
T Consensus 75 ~~~~~~~~~~~~iPvV~~~~~~~~---~--~~~~~V~~d~~~~g~~~~~~l~~~~~g~~~i~~i~~~~~~~~~~R~~gf~ 149 (305)
T 3g1w_A 75 LTDTINKAVDAGIPIVLFDSGAPD---S--HAHSFLGTNNYNAGMNAAYKMAELLDGEGEVAVITLPNQLNHQERTTGFK 149 (305)
T ss_dssp THHHHHHHHHTTCCEEEESSCCTT---S--CCSCEEECCHHHHHHHHHHHHHHHTTTCEEEEEEECTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHCCCcEEEECCCCCC---C--ceeEEECcCHHHHHHHHHHHHHHHhCCCcEEEEEeCCCcccHHHHHHHHH
Confidence 344556667789999987654332 1 123345677788888899998888 999999998543 23345578899
Q ss_pred HHHHhcCcEEEEEEecCCCCCCChHHHHHHHHHHhcC--CceEEEEEcchhhHHHHHHHHHHcCCCCCceEEEEeC
Q 002211 204 DKLAEIRCKISYKSALPPDQSVTETDVRNELVKVRMM--EARVIVVHGYSRTGLMVFDVAQRLGMMDSGYVWIATT 277 (953)
Q Consensus 204 ~~l~~~g~~v~~~~~~~~~~~~~~~d~~~~l~~i~~~--~~~vii~~~~~~~~~~~~~~a~~~g~~~~~~~wi~~~ 277 (953)
+++++.|..+.....+... .+.......+.++.+. ++++|+ +.+...+..++++++++|+. .+...++.|
T Consensus 150 ~~l~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~l~~~~~~~ai~-~~~d~~a~g~~~al~~~g~~-~di~vig~d 221 (305)
T 3g1w_A 150 ETLEAEFPAIEVIAVEDGR--GDSLHSRRVAHQLLEDYPNLAGIF-ATEANGGVGVGDAVRLESRA-GEIQIISFD 221 (305)
T ss_dssp HHHHHHCTTEEEEEEEECT--TCHHHHHHHHHHHHHHCTTEEEEE-ESSHHHHHHHHHHHHHTTCT-TTSEEEEES
T ss_pred HHHHhhCCCCEEEEEecCC--CCHHHHHHHHHHHHHhCCCceEEE-ECCCcchhhHHHHHHhcCCC-CCeEEEEeC
Confidence 9999887654332222222 2244555555555443 456554 45556788899999999986 444555554
No 105
>3d8u_A PURR transcriptional regulator; APC91343.1, vibrio parahaem RIMD 2210633, structural genomics, PSI-2, protein structure initiative; HET: MSE; 2.88A {Vibrio parahaemolyticus}
Probab=98.14 E-value=7.1e-05 Score=78.76 Aligned_cols=206 Identities=10% Similarity=0.011 Sum_probs=132.2
Q ss_pred eEEEeEEEec-CCCchhHHHHHHHHHHHHHhcCCCCCCCcEEEEEEecCCCChHHHHHHHHHHHhcCcEEEEc-cCChhh
Q 002211 49 VLNVGAIFSF-GTVNGQVSRIAMKAAQDDINSDPRVLGGRKLSITMHDAKFNGFLSIMGALQFMETDTLAIVG-PQSAVM 126 (953)
Q Consensus 49 ~i~IG~l~~~-~~~~g~~~~~a~~lAve~iN~~g~il~g~~l~l~~~D~~~~~~~a~~~a~~li~~~v~aiiG-p~~S~~ 126 (953)
.-+||++.|. +..+-.....+++-+.++. |+++.+ .++..++....+....++++++.+||- |....
T Consensus 3 s~~Ig~i~~~~~~~~~~~~~~gi~~~~~~~--------g~~~~~--~~~~~~~~~~~~~~~~l~~~~vdgii~~~~~~~- 71 (275)
T 3d8u_A 3 AYSIALIIPSLFEKACAHFLPSFQQALNKA--------GYQLLL--GYSDYSIEQEEKLLSTFLESRPAGVVLFGSEHS- 71 (275)
T ss_dssp -CEEEEEESCSSCHHHHHHHHHHHHHHHHT--------SCEECC--EECTTCHHHHHHHHHHHHTSCCCCEEEESSCCC-
T ss_pred ceEEEEEeCCCccccHHHHHHHHHHHHHHC--------CCEEEE--EcCCCCHHHHHHHHHHHHhcCCCEEEEeCCCCC-
Confidence 3479999985 3444455667777766652 555544 466667777777777788888877663 22222
Q ss_pred HHHHHHhhhhCCCcEEEeecCCCCCCCCCCCcEEEccCChHHHHHHHHHHHHHcCCcEEEEEEecC--ccccchHHHHHH
Q 002211 127 AHVLSHLANELQVPLLSFTALDPTLSPLQYPFFVQTAPNDLYLMSAIAEMVSYFGWGEVIAIFNDD--DQGRNGVTALGD 204 (953)
Q Consensus 127 a~av~~v~~~~~vP~Is~~at~~~ls~~~~p~~fr~~p~d~~~~~ai~~~l~~~~w~~vaii~~d~--~~g~~~~~~l~~ 204 (953)
. .....+...++|+|......+ + +.+..+..++...+..+++++...|.++++++..+. .......+.|.+
T Consensus 72 ~-~~~~~l~~~~iPvV~~~~~~~---~---~~~~~V~~d~~~~~~~a~~~L~~~G~~~i~~i~~~~~~~~~~~R~~gf~~ 144 (275)
T 3d8u_A 72 Q-RTHQLLEASNTPVLEIAELSS---K---ASYLNIGVDHFEVGKACTRHLIEQGFKNVGFIGARGNHSTLQRQLHGWQS 144 (275)
T ss_dssp H-HHHHHHHHHTCCEEEESSSCS---S---SSSEEECBCHHHHHHHHHHHHHTTTCCCEEEEECSCSSHHHHHHHHHHHH
T ss_pred H-HHHHHHHhCCCCEEEEeeccC---C---CCCCEEEEChHHHHHHHHHHHHHCCCCeEEEEcCCCCCchHHHHHHHHHH
Confidence 2 333445567999998754322 1 223456677777788889998888999999998653 345566889999
Q ss_pred HHHhcCcEEEEEEecCCCCCCChHHHHHHHHHHhcC--CceEEEEEcchhhHHHHHHHHHHcCCCCCceEEEE
Q 002211 205 KLAEIRCKISYKSALPPDQSVTETDVRNELVKVRMM--EARVIVVHGYSRTGLMVFDVAQRLGMMDSGYVWIA 275 (953)
Q Consensus 205 ~l~~~g~~v~~~~~~~~~~~~~~~d~~~~l~~i~~~--~~~vii~~~~~~~~~~~~~~a~~~g~~~~~~~wi~ 275 (953)
++++.|+.+.....+... .+..+....+.++.+. ++++|+. .+...+..+++++++.|+..++-+.+.
T Consensus 145 ~l~~~g~~~~~~~~~~~~--~~~~~~~~~~~~~l~~~~~~~ai~~-~~d~~a~g~~~al~~~g~~vP~di~vv 214 (275)
T 3d8u_A 145 AMIENYLTPDHFLTTHEA--PSSQLGAEGLAKLLLRDSSLNALVC-SHEEIAIGALFECHRRVLKVPTDIAII 214 (275)
T ss_dssp HHHHTTCCCCCEEECSSC--CCHHHHHHHHHHHHTTCTTCCEEEE-SSHHHHHHHHHHHHHTTCCTTTTCEEE
T ss_pred HHHHcCCCCCccEEEeCC--CChhHHHHHHHHHHhCCCCCCEEEE-cCcHHHHHHHHHHHHcCCCCCCceEEE
Confidence 999998754322222222 2244445556665543 4777664 455668889999999998755444333
No 106
>8abp_A L-arabinose-binding protein; binding proteins; HET: GLA GAL; 1.49A {Escherichia coli} SCOP: c.93.1.1 PDB: 7abp_A* 6abp_A* 1abe_A* 1abf_A* 5abp_A* 1bap_A* 1apb_A* 9abp_A* 2wrz_A
Probab=98.13 E-value=0.0001 Score=78.89 Aligned_cols=215 Identities=10% Similarity=0.003 Sum_probs=136.2
Q ss_pred ceEEEeEEEecC-CCchhHHHHHHHHHHHHHhcCCCCCCCcEEEEEEecCCCChHHHHHHHHHHHhcCcEEEEc-cCChh
Q 002211 48 EVLNVGAIFSFG-TVNGQVSRIAMKAAQDDINSDPRVLGGRKLSITMHDAKFNGFLSIMGALQFMETDTLAIVG-PQSAV 125 (953)
Q Consensus 48 ~~i~IG~l~~~~-~~~g~~~~~a~~lAve~iN~~g~il~g~~l~l~~~D~~~~~~~a~~~a~~li~~~v~aiiG-p~~S~ 125 (953)
++++||++.|.. ..+-.....+++-+.++. |+++ .+.++ .++..-.+....++++++.+||- |..+.
T Consensus 1 ~~~~Ig~i~~~~~~~~~~~~~~gi~~~a~~~--------g~~~--~~~~~-~~~~~~~~~i~~l~~~~vdgiii~~~~~~ 69 (306)
T 8abp_A 1 ENLKLGFLVKQPEEPWFQTEWKFADKAGKDL--------GFEV--IKIAV-PDGEKTLNAIDSLAASGAKGFVICTPDPK 69 (306)
T ss_dssp -CEEEEEEESCTTSHHHHHHHHHHHHHHHHH--------TEEE--EEEEC-CSHHHHHHHHHHHHHTTCCEEEEECSCGG
T ss_pred CCeEEEEEeCCCCchHHHHHHHHHHHHHHHc--------CCEE--EEeCC-CCHHHHHHHHHHHHHcCCCEEEEeCCCch
Confidence 368999999864 455566778888887775 4555 45566 48888888888899998888764 44455
Q ss_pred hHHHHHHhhhhCCCcEEEeecCCCCCCCCCCCcEEEccCChHHHHHHHHHHHH-HcCCc-----EEEEEE-ecC--cccc
Q 002211 126 MAHVLSHLANELQVPLLSFTALDPTLSPLQYPFFVQTAPNDLYLMSAIAEMVS-YFGWG-----EVIAIF-NDD--DQGR 196 (953)
Q Consensus 126 ~a~av~~v~~~~~vP~Is~~at~~~ls~~~~p~~fr~~p~d~~~~~ai~~~l~-~~~w~-----~vaii~-~d~--~~g~ 196 (953)
........+.+.++|+|......+.......+.+..+..++...+..+++++. ++|-+ +++++. ... ....
T Consensus 70 ~~~~~~~~~~~~~iPvV~~~~~~~~~~~~~~~~~~~V~~D~~~~g~~a~~~l~~~~g~~~~~~~~i~~~~~~~~~~~~~~ 149 (306)
T 8abp_A 70 LGSAIVAKARGYDMKVIAVDDQFVNAKGKPMDTVPLVMLAATKIGERQGQELYKEMQKRGWDVKESAVMAITANELDTAR 149 (306)
T ss_dssp GHHHHHHHHHHTTCEEEEESSCCBCTTSCBCTTSCEEEECHHHHHHHHHHHHHHHHHHHTCCGGGEEEEEEECTTSHHHH
T ss_pred hhHHHHHHHHHCCCcEEEeCCCCCCccccccccccEEecChhHHHHHHHHHHHHHHHhcCCCccceEEEEecCCCChHHH
Confidence 55555667778899999876432222111111233344566666777777654 33433 888886 332 3345
Q ss_pred chHHHHHHHHHhcCc---EEEEEEecCCCCCCChHHHHHHHHHHhcCC--ceE-EEEEcchhhHHHHHHHHHHcCCCCCc
Q 002211 197 NGVTALGDKLAEIRC---KISYKSALPPDQSVTETDVRNELVKVRMME--ARV-IVVHGYSRTGLMVFDVAQRLGMMDSG 270 (953)
Q Consensus 197 ~~~~~l~~~l~~~g~---~v~~~~~~~~~~~~~~~d~~~~l~~i~~~~--~~v-ii~~~~~~~~~~~~~~a~~~g~~~~~ 270 (953)
...+.|.+++++.|. +++....-. .+.+.-...+.++.+.. ++. +|++.+...+..++++++++|+...+
T Consensus 150 ~R~~Gf~~~l~~~g~~~~~~~~~~~~~----~~~~~~~~~~~~~l~~~~~~~a~~i~~~nD~~A~g~~~al~~~g~~v~d 225 (306)
T 8abp_A 150 RRTTGSMDALKAAGFPEKQIYQVPTKS----NDIPGAFDAANSMLVQHPEVKHWLIVGMNDSTVLGGVRATEGQGFKAAD 225 (306)
T ss_dssp HHHHHHHHHHHHHTCCGGGEEEEECSS----SSHHHHHHHHHHHHTTCTTCSEEEEECSSHHHHHHHHHHHHHTTCCGGG
T ss_pred HHHHHHHHHHHhcCCCCcEEEeeccCC----CChHHHHHHHHHHHHhCCCCceEEEEeCCcHHHHHHHHHHHHcCCCCCc
Confidence 567889999999874 344322211 22455556666666554 455 45566777888999999999986423
Q ss_pred eEEEEeC
Q 002211 271 YVWIATT 277 (953)
Q Consensus 271 ~~wi~~~ 277 (953)
...++.|
T Consensus 226 i~vvG~D 232 (306)
T 8abp_A 226 IIGIGIN 232 (306)
T ss_dssp EEEEEES
T ss_pred eEEEEeC
Confidence 3344444
No 107
>2fep_A Catabolite control protein A; CCPA, transcriptional regulator; HET: SEP; 2.45A {Bacillus subtilis} PDB: 2nzu_G* 1sxh_A 1sxi_A 1sxg_A* 2nzv_G* 2oen_G*
Probab=98.11 E-value=8.3e-05 Score=78.98 Aligned_cols=211 Identities=10% Similarity=0.005 Sum_probs=135.4
Q ss_pred CceEEEeEEEec-CCCchhHHHHHHHHHHHHHhcCCCCCCCcEEEEEEecCCCChHHHHHHHHHHHhcCcEEEEccCChh
Q 002211 47 PEVLNVGAIFSF-GTVNGQVSRIAMKAAQDDINSDPRVLGGRKLSITMHDAKFNGFLSIMGALQFMETDTLAIVGPQSAV 125 (953)
Q Consensus 47 ~~~i~IG~l~~~-~~~~g~~~~~a~~lAve~iN~~g~il~g~~l~l~~~D~~~~~~~a~~~a~~li~~~v~aiiGp~~S~ 125 (953)
...-+||++.|- +..+-.....+++-+.++. |+++. +.++..++....+....+++++|.+||-.....
T Consensus 14 ~~s~~Igvi~~~~~~~~~~~~~~gi~~~a~~~--------g~~~~--~~~~~~~~~~~~~~~~~l~~~~vdgiIi~~~~~ 83 (289)
T 2fep_A 14 KKTTTVGVIIPDISSIFYSELARGIEDIATMY--------KYNII--LSNSDQNMEKELHLLNTMLGKQVDGIVFMGGNI 83 (289)
T ss_dssp --CCEEEEEESCTTSHHHHHHHHHHHHHHHHT--------TCEEE--EEECTTCHHHHHHHHHHHHHTTCSEEEECCSCC
T ss_pred CCCCeEEEEeCCCCCchHHHHHHHHHHHHHHc--------CCEEE--EEeCCCCHHHHHHHHHHHHhCCCCEEEEecCCC
Confidence 346789999985 3444456667777776652 56665 456777887777777788888898887533222
Q ss_pred hHHHHHHhhhhCCCcEEEeecCCCCCCCCCCCcEEEccCChHHHHHHHHHHHHHcCCcEEEEEEecC---ccccchHHHH
Q 002211 126 MAHVLSHLANELQVPLLSFTALDPTLSPLQYPFFVQTAPNDLYLMSAIAEMVSYFGWGEVIAIFNDD---DQGRNGVTAL 202 (953)
Q Consensus 126 ~a~av~~v~~~~~vP~Is~~at~~~ls~~~~p~~fr~~p~d~~~~~ai~~~l~~~~w~~vaii~~d~---~~g~~~~~~l 202 (953)
.. .....+...++|+|......+ +.. +..+..++...+..+++++...|.+++++|.... .......+.|
T Consensus 84 ~~-~~~~~l~~~~iPvV~~~~~~~---~~~---~~~V~~D~~~~g~~a~~~L~~~G~~~I~~i~~~~~~~~~~~~R~~Gf 156 (289)
T 2fep_A 84 TD-EHVAEFKRSPVPIVLAASVEE---QEE---TPSVAIDYEQAIYDAVKLLVDKGHTDIAFVSGPMAEPINRSKKLQGY 156 (289)
T ss_dssp CH-HHHHHHHHSSSCEEEESCCCT---TCC---SCEEECCHHHHHHHHHHHHHHTTCSSEEEEESCTTSHHHHTTHHHHH
T ss_pred CH-HHHHHHHhcCCCEEEEccccC---CCC---CCEEEECcHHHHHHHHHHHHHCCCCeEEEEeCCccccccHHHHHHHH
Confidence 22 223344578999998754332 112 2235567777788889998888999999998653 2355678899
Q ss_pred HHHHHhcCcEEEEEEecCCCCCCChHHHHHHHHHHhcC--CceEEEEEcchhhHHHHHHHHHHcCCCCCce-EEEEeC
Q 002211 203 GDKLAEIRCKISYKSALPPDQSVTETDVRNELVKVRMM--EARVIVVHGYSRTGLMVFDVAQRLGMMDSGY-VWIATT 277 (953)
Q Consensus 203 ~~~l~~~g~~v~~~~~~~~~~~~~~~d~~~~l~~i~~~--~~~vii~~~~~~~~~~~~~~a~~~g~~~~~~-~wi~~~ 277 (953)
.+++++.|+.+.....+... .+..+-...+.++.+. ++++|+. .+...+..+++++++.|+..++- ..++.|
T Consensus 157 ~~al~~~g~~~~~~~~~~~~--~~~~~~~~~~~~~l~~~~~~~ai~~-~~d~~A~g~~~al~~~G~~vP~di~vvg~D 231 (289)
T 2fep_A 157 KRALEEANLPFNEQFVAEGD--YTYDSGLEALQHLMSLDKKPTAILS-ATDEMALGIIHAAQDQGLSIPEDLDIIGFD 231 (289)
T ss_dssp HHHHHHTTCCCCGGGEEECC--SCHHHHHHHHHHHTTSSSCCSEEEE-SSHHHHHHHHHHHHHTTCCTTTTCEEEEEE
T ss_pred HHHHHHcCCCCChheEeeCC--CCHHHHHHHHHHHHcCCCCCCEEEE-CCHHHHHHHHHHHHHcCCCCCCCeEEEEEC
Confidence 99999998764321111111 1244445556666553 5677665 45566888999999999865443 334433
No 108
>3clk_A Transcription regulator; 11017J, PSI-II, NYSGXRC, dimer, structural genomics, protein structure initiative; 2.08A {Lactobacillus plantarum WCFS1}
Probab=98.10 E-value=2e-05 Score=83.81 Aligned_cols=206 Identities=14% Similarity=0.045 Sum_probs=121.1
Q ss_pred CceEEEeEEEec-CCCchhHHHHHHHHHHHHHhcCCCCCCCcEEEEEEecCCCChHHHHHHHHHHHhcCcEEEEccCChh
Q 002211 47 PEVLNVGAIFSF-GTVNGQVSRIAMKAAQDDINSDPRVLGGRKLSITMHDAKFNGFLSIMGALQFMETDTLAIVGPQSAV 125 (953)
Q Consensus 47 ~~~i~IG~l~~~-~~~~g~~~~~a~~lAve~iN~~g~il~g~~l~l~~~D~~~~~~~a~~~a~~li~~~v~aiiGp~~S~ 125 (953)
....+||++.|. +..+......+++-+.++. |+++.+. .++..++....+....++.+++.+||......
T Consensus 6 ~~~~~Ig~i~~~~~~~~~~~~~~gi~~~a~~~--------g~~~~~~-~~~~~~~~~~~~~~~~l~~~~vdgiI~~~~~~ 76 (290)
T 3clk_A 6 KSSNVIAAVVSSVRTNFAQQILDGIQEEAHKN--------GYNLIIV-YSGSADPEEQKHALLTAIERPVMGILLLSIAL 76 (290)
T ss_dssp --CCEEEEECCCCSSSHHHHHHHHHHHHHHTT--------TCEEEEE-C----------CHHHHHHSSCCSEEEEESCC-
T ss_pred ccCCEEEEEeCCCCChHHHHHHHHHHHHHHHc--------CCeEEEE-eCCCCCHHHHHHHHHHHHhcCCCEEEEecccC
Confidence 345689999985 3455556667776666542 5665543 16666666555666777778888887533322
Q ss_pred hHHHHHHhhhhCCCcEEEeecCCCCCCCCCCCcEEEccCChHHHHHHHHHHHHHcCCcEEEEEEec--CccccchHHHHH
Q 002211 126 MAHVLSHLANELQVPLLSFTALDPTLSPLQYPFFVQTAPNDLYLMSAIAEMVSYFGWGEVIAIFND--DDQGRNGVTALG 203 (953)
Q Consensus 126 ~a~av~~v~~~~~vP~Is~~at~~~ls~~~~p~~fr~~p~d~~~~~ai~~~l~~~~w~~vaii~~d--~~~g~~~~~~l~ 203 (953)
.. .....+...++|+|......+. + +..+..++...+..+++++...|-+++++|..+ ........+.|.
T Consensus 77 ~~-~~~~~l~~~~iPvV~~~~~~~~------~-~~~V~~D~~~~g~~a~~~L~~~G~~~i~~i~~~~~~~~~~~R~~gf~ 148 (290)
T 3clk_A 77 TD-DNLQLLQSSDVPYCFLSMGFDD------D-RPFISSDDEDIGYQATNLLINEGHRQIGIAGIDQYPYTGRKRLAGYK 148 (290)
T ss_dssp ----CHHHHHCC--CEEEESCC--C------C-SCEEECCHHHHHHHHHHHHHTTTCCSEEEESCCCCTTTHHHHHHHHH
T ss_pred CH-HHHHHHHhCCCCEEEEcCCCCC------C-CCEEEeChHHHHHHHHHHHHHcCCCEEEEEeCCCCCcchHHHHHHHH
Confidence 22 3334456689999987543321 2 334556777778889999888899999999854 344566788999
Q ss_pred HHHHhcCcEEEEEEecCCCCCCChHHHHHHHHHHhc-CCceEEEEEcchhhHHHHHHHHHHcCCCCCceE
Q 002211 204 DKLAEIRCKISYKSALPPDQSVTETDVRNELVKVRM-MEARVIVVHGYSRTGLMVFDVAQRLGMMDSGYV 272 (953)
Q Consensus 204 ~~l~~~g~~v~~~~~~~~~~~~~~~d~~~~l~~i~~-~~~~vii~~~~~~~~~~~~~~a~~~g~~~~~~~ 272 (953)
+++++.|+.+.....+... .+..+-...+.++.+ .++++|+. .+...+..+++++++.|+..++-+
T Consensus 149 ~~l~~~g~~~~~~~~~~~~--~~~~~~~~~~~~~l~~~~~~ai~~-~~d~~a~g~~~al~~~g~~vP~di 215 (290)
T 3clk_A 149 KALKEANIAINQEWIKPGD--YSYTSGEQAMKAFGKNTDLTGIIA-ASDMTAIGILNQASSFGIEVPKDL 215 (290)
T ss_dssp HHHHHTTCCCCGGGEECCC--SSHHHHHHHHHHHCTTCCCSEEEE-SSHHHHHHHHHHHHHTTCCTTTTC
T ss_pred HHHHHcCCCCCcceEEcCC--CChhhHHHHHHHHhccCCCcEEEE-CCcHHHHHHHHHHHHcCCCCCCce
Confidence 9999998764311111111 124444455566553 45777765 445567888999999998654433
No 109
>2rgy_A Transcriptional regulator, LACI family; 11011J, NYSGXRC, transctiptional regulator, SUG binding protein, structural genomics, PSI-2; 2.05A {Burkholderia phymatum}
Probab=98.10 E-value=4.2e-05 Score=81.33 Aligned_cols=206 Identities=8% Similarity=-0.051 Sum_probs=129.3
Q ss_pred CceEEEeEEEecC-CCchhHHHHHHHHHHHHHhcCCCCCCCcEEEEEEecCCCChHHHHH---HHHHHHhcCcEEEEccC
Q 002211 47 PEVLNVGAIFSFG-TVNGQVSRIAMKAAQDDINSDPRVLGGRKLSITMHDAKFNGFLSIM---GALQFMETDTLAIVGPQ 122 (953)
Q Consensus 47 ~~~i~IG~l~~~~-~~~g~~~~~a~~lAve~iN~~g~il~g~~l~l~~~D~~~~~~~a~~---~a~~li~~~v~aiiGp~ 122 (953)
....+||++.|.. ..+......+++-+.++. |+++. +.++..++..... ....++++++.+||-..
T Consensus 6 ~~~~~Ig~i~~~~~~~~~~~~~~gi~~~a~~~--------g~~~~--~~~~~~~~~~~~~~~~~~~~l~~~~vdgiIi~~ 75 (290)
T 2rgy_A 6 QQLGIIGLFVPTFFGSYYGTILKQTDLELRAV--------HRHVV--VATGCGESTPREQALEAVRFLIGRDCDGVVVIS 75 (290)
T ss_dssp --CCEEEEECSCSCSHHHHHHHHHHHHHHHHT--------TCEEE--EECCCSSSCHHHHHHHHHHHHHHTTCSEEEECC
T ss_pred CCCCeEEEEeCCCCCchHHHHHHHHHHHHHHC--------CCEEE--EEeCCCchhhhhhHHHHHHHHHhcCccEEEEec
Confidence 3456899999853 444556677777776652 56655 4555556555555 66677788898888533
Q ss_pred ChhhHHHHHHhhhhCCCcEEEeecCCCCCCCCCCCcEEEccCChHHHHHHHHHHHHHcCCcEEEEEEecC--ccccchHH
Q 002211 123 SAVMAHVLSHLANELQVPLLSFTALDPTLSPLQYPFFVQTAPNDLYLMSAIAEMVSYFGWGEVIAIFNDD--DQGRNGVT 200 (953)
Q Consensus 123 ~S~~a~av~~v~~~~~vP~Is~~at~~~ls~~~~p~~fr~~p~d~~~~~ai~~~l~~~~w~~vaii~~d~--~~g~~~~~ 200 (953)
..... .....+...++|+|......+. +.+..+..++...+..+++++...|-+++++|..+. .......+
T Consensus 76 ~~~~~-~~~~~l~~~~iPvV~~~~~~~~------~~~~~V~~D~~~~g~~a~~~L~~~G~~~I~~i~~~~~~~~~~~R~~ 148 (290)
T 2rgy_A 76 HDLHD-EDLDELHRMHPKMVFLNRAFDA------LPDASFCPDHRRGGELAAATLIEHGHRKLAVISGPFTASDNVERLD 148 (290)
T ss_dssp SSSCH-HHHHHHHHHCSSEEEESSCCTT------SGGGEECCCHHHHHHHHHHHHHHTTCCSEEEEESCTTCHHHHHHHH
T ss_pred CCCCH-HHHHHHhhcCCCEEEEccccCC------CCCCEEEeCcHHHHHHHHHHHHHCCCceEEEEeCCCCCccHHHHHH
Confidence 22222 2334445679999987543321 122345567777788888998888999999998653 33456678
Q ss_pred HHHHHHHhcCcEEEEEEecCCCCCCChHHHHHHHHHHhc--CCceEEEEEcchhhHHHHHHHHHHcCCCCCceE
Q 002211 201 ALGDKLAEIRCKISYKSALPPDQSVTETDVRNELVKVRM--MEARVIVVHGYSRTGLMVFDVAQRLGMMDSGYV 272 (953)
Q Consensus 201 ~l~~~l~~~g~~v~~~~~~~~~~~~~~~d~~~~l~~i~~--~~~~vii~~~~~~~~~~~~~~a~~~g~~~~~~~ 272 (953)
.|.+++++.|+++.....+... .+..+-...+.++.+ .++++|+. .+...+..+++++++.|+..++-+
T Consensus 149 Gf~~al~~~g~~~~~~~~~~~~--~~~~~~~~~~~~~l~~~~~~~ai~~-~~d~~A~g~~~al~~~G~~vP~di 219 (290)
T 2rgy_A 149 GFFDELARHGIARDSVPLIESD--FSPEGGYAATCQLLESKAPFTGLFC-ANDTMAVSALARFQQLGISVPGDV 219 (290)
T ss_dssp HHHHHHHTTTCCGGGSCEEECC--SSHHHHHHHHHHHHHHTCCCSEEEE-SSHHHHHHHHHHHHHTTCCTTTTC
T ss_pred HHHHHHHHcCCCCCcccEEecC--CChhHHHHHHHHHHhCCCCCcEEEE-CCcHHHHHHHHHHHHcCCCCCCce
Confidence 8999999988754211111111 123333444555443 46788774 556678889999999998755433
No 110
>3dbi_A Sugar-binding transcriptional regulator, LACI FAM; structural genomics, sugar-binding transcriptional regulator structure initiative, PSI-2; HET: MSE; 2.45A {Escherichia coli K12}
Probab=98.09 E-value=6.8e-05 Score=81.69 Aligned_cols=212 Identities=9% Similarity=0.017 Sum_probs=140.9
Q ss_pred CceEEEeEEEec---CCCchhHHHHHHHHHHHHHhcCCCCCCCcEEEEEEecCCCChHHHHHHHHHHHhcCcEEEEccCC
Q 002211 47 PEVLNVGAIFSF---GTVNGQVSRIAMKAAQDDINSDPRVLGGRKLSITMHDAKFNGFLSIMGALQFMETDTLAIVGPQS 123 (953)
Q Consensus 47 ~~~i~IG~l~~~---~~~~g~~~~~a~~lAve~iN~~g~il~g~~l~l~~~D~~~~~~~a~~~a~~li~~~v~aiiGp~~ 123 (953)
...-+||++.|. +..+-.....+++-+.++. |+++. +.++..++....+....++.+++.+||-...
T Consensus 59 ~~~~~Igvi~~~~~~~~~~~~~~~~gi~~~a~~~--------g~~~~--~~~~~~~~~~~~~~~~~l~~~~vdgiIi~~~ 128 (338)
T 3dbi_A 59 KSTQTLGLVVTNTLYHGIYFSELLFHAARMAEEK--------GRQLL--LADGKHSAEEERQAIQYLLDLRCDAIMIYPR 128 (338)
T ss_dssp -CCSEEEEEECTTTTSTTHHHHHHHHHHHHHHHT--------TCEEE--EEECTTSHHHHHHHHHHHHHTTCSEEEECCS
T ss_pred CCCCEEEEEecCCcccChhHHHHHHHHHHHHHHC--------CCEEE--EEeCCCChHHHHHHHHHHHhCCCCEEEEeCC
Confidence 446789999996 3445556677777766662 55554 5667778887777778888889988885433
Q ss_pred hhhHHHHHHhhhhCCCcEEEeecCCCCCCCCCCCcEEEccCChHHHHHHHHHHHHHcCCcEEEEEEec--CccccchHHH
Q 002211 124 AVMAHVLSHLANELQVPLLSFTALDPTLSPLQYPFFVQTAPNDLYLMSAIAEMVSYFGWGEVIAIFND--DDQGRNGVTA 201 (953)
Q Consensus 124 S~~a~av~~v~~~~~vP~Is~~at~~~ls~~~~p~~fr~~p~d~~~~~ai~~~l~~~~w~~vaii~~d--~~~g~~~~~~ 201 (953)
......+...+...++|+|......+. ... ..+..++...+..+++++...|.+++++|... ........+.
T Consensus 129 ~~~~~~~~~~~~~~~iPvV~~~~~~~~---~~~---~~V~~D~~~~~~~a~~~L~~~G~~~I~~i~~~~~~~~~~~R~~G 202 (338)
T 3dbi_A 129 FLSVDEIDDIIDAHSQPIMVLNRRLRK---NSS---HSVWCDHKQTSFNAVAELINAGHQEIAFLTGSMDSPTSIERLAG 202 (338)
T ss_dssp SSCHHHHHHHHHHCSSCEEEESSCCSS---SGG---GEECBCHHHHHHHHHHHHHHTTCCSEEEECCCTTCHHHHHHHHH
T ss_pred CCChHHHHHHHHcCCCCEEEEcCCCCC---CCC---CEEEEChHHHHHHHHHHHHHCCCCEEEEEeCCCCCccHHHHHHH
Confidence 333455677888889999987543321 122 23566777778888899988999999999754 3345566889
Q ss_pred HHHHHHhcCcEEEEEEecCCCCCCChHHHHHHHHHHhc--CCceEEEEEcchhhHHHHHHHHHHcCCCCCceE-EEEeC
Q 002211 202 LGDKLAEIRCKISYKSALPPDQSVTETDVRNELVKVRM--MEARVIVVHGYSRTGLMVFDVAQRLGMMDSGYV-WIATT 277 (953)
Q Consensus 202 l~~~l~~~g~~v~~~~~~~~~~~~~~~d~~~~l~~i~~--~~~~vii~~~~~~~~~~~~~~a~~~g~~~~~~~-wi~~~ 277 (953)
|.+++++.|+.+.....+... .+..+-...+.++.+ .++++|+. .+...+..++++++++|+..++-+ .++-|
T Consensus 203 f~~al~~~g~~~~~~~~~~~~--~~~~~~~~~~~~ll~~~~~~~ai~~-~nd~~A~g~~~al~~~G~~vP~di~vvg~D 278 (338)
T 3dbi_A 203 YKDALAQHGIALNEKLIANGK--WTPASGAEGVEMLLERGAKFSALVA-SNDDMAIGAMKALHERGVAVPEQVSVIGFD 278 (338)
T ss_dssp HHHHHHHTTCCCCGGGEECCC--SSHHHHHHHHHHHHHTTCCCSEEEE-SSHHHHHHHHHHHHHTTCCTTTTCEEEEES
T ss_pred HHHHHHHCCCCCCcceEEeCC--CCHHHHHHHHHHHHcCCCCCeEEEE-CChHHHHHHHHHHHHcCCCCCCCeEEEEEC
Confidence 999999999765322112222 224444455555543 45777664 455677789999999998765444 44443
No 111
>3bbl_A Regulatory protein of LACI family; protein structure initiative II, PSI-II, NYSGXRC, transcript regulator, periplasmic binding protein; 2.35A {Chloroflexus aggregans}
Probab=98.08 E-value=4.2e-05 Score=81.24 Aligned_cols=209 Identities=9% Similarity=-0.034 Sum_probs=132.4
Q ss_pred eEEEeEEEec-----CCCchhHHHHHHHHHHHHHhcCCCCCCCcEEEEEEecCCCChHHHHHHHHHHHhcCcEEEEccCC
Q 002211 49 VLNVGAIFSF-----GTVNGQVSRIAMKAAQDDINSDPRVLGGRKLSITMHDAKFNGFLSIMGALQFMETDTLAIVGPQS 123 (953)
Q Consensus 49 ~i~IG~l~~~-----~~~~g~~~~~a~~lAve~iN~~g~il~g~~l~l~~~D~~~~~~~a~~~a~~li~~~v~aiiGp~~ 123 (953)
.-+||++.|. +..+-.....+++-+.++. |+++. +.++..++....+....++++++.+||-...
T Consensus 4 s~~Ig~i~~~~~~~~~~~~~~~~~~gi~~~a~~~--------g~~~~--~~~~~~~~~~~~~~~~~l~~~~vdgiIi~~~ 73 (287)
T 3bbl_A 4 SFMIGYSWTQTEPGQVNHILDQFLSSMVREAGAV--------NYFVL--PFPFSEDRSQIDIYRDLIRSGNVDGFVLSSI 73 (287)
T ss_dssp CCEEEECCCCCCTTCSCCTHHHHHHHHHHHHHHT--------TCEEE--ECCCCSSTTCCHHHHHHHHTTCCSEEEECSC
T ss_pred eeEEEEEecccccccCChhHHHHHHHHHHHHHHc--------CCEEE--EEeCCCchHHHHHHHHHHHcCCCCEEEEeec
Confidence 3579999985 4556667778888777762 56654 4555555554455566777788988875332
Q ss_pred hhhHHHHHHhhhhCCCcEEEeecCCCCCCCCCCCcEEEccCChHHHHHHHHHHHHHcCCcEEEEEEecC--ccccchHHH
Q 002211 124 AVMAHVLSHLANELQVPLLSFTALDPTLSPLQYPFFVQTAPNDLYLMSAIAEMVSYFGWGEVIAIFNDD--DQGRNGVTA 201 (953)
Q Consensus 124 S~~a~av~~v~~~~~vP~Is~~at~~~ls~~~~p~~fr~~p~d~~~~~ai~~~l~~~~w~~vaii~~d~--~~g~~~~~~ 201 (953)
.... .....+...++|+|......+ +.. +..+..++...+..+++++...|.+++++|.... .......+.
T Consensus 74 ~~~~-~~~~~l~~~~iPvV~~~~~~~---~~~---~~~V~~D~~~~g~~a~~~L~~~G~~~I~~i~~~~~~~~~~~R~~G 146 (287)
T 3bbl_A 74 NYND-PRVQFLLKQKFPFVAFGRSNP---DWD---FAWVDIDGTAGTRQAVEYLIGRGHRRIAILAWPEDSRVGNDRLQG 146 (287)
T ss_dssp CTTC-HHHHHHHHTTCCEEEESCCST---TCC---CCEEEECHHHHHHHHHHHHHHHTCCCEEEEECCTTCHHHHHHHHH
T ss_pred CCCc-HHHHHHHhcCCCEEEECCcCC---CCC---CCEEEeccHHHHHHHHHHHHHCCCCeEEEEeCCcccccHHHHHHH
Confidence 2212 233445668999998754322 112 2234566777788888988888999999998543 335566788
Q ss_pred HHHHHHhcCcEEEEEEecCCCCCCChHHHHHHHHHHhc-C---CceEEEEEcchhhHHHHHHHHHHcCCCCCc-eEEEEe
Q 002211 202 LGDKLAEIRCKISYKSALPPDQSVTETDVRNELVKVRM-M---EARVIVVHGYSRTGLMVFDVAQRLGMMDSG-YVWIAT 276 (953)
Q Consensus 202 l~~~l~~~g~~v~~~~~~~~~~~~~~~d~~~~l~~i~~-~---~~~vii~~~~~~~~~~~~~~a~~~g~~~~~-~~wi~~ 276 (953)
|.+++++.|+.+.....+... .+..+-...+.++.+ . ++++|+. .+...+..+++++++.|+..++ ...++.
T Consensus 147 f~~~l~~~g~~~~~~~~~~~~--~~~~~~~~~~~~~l~~~~~~~~~ai~~-~~d~~a~g~~~al~~~G~~vP~di~vig~ 223 (287)
T 3bbl_A 147 YLEAMQTAQLPIETGYILRGE--GTFEVGRAMTLHLLDLSPERRPTAIMT-LNDTMAIGAMAAARERGLTIGTDLAIIGF 223 (287)
T ss_dssp HHHHHHHTTCCCCGGGEEECC--SSHHHHHHHHHHHHTSCTTTSCSEEEE-SSHHHHHHHHHHHHHTTCCBTTTBEEEEE
T ss_pred HHHHHHHcCCCCChhhEEeCC--CCHHHHHHHHHHHHhhCCCCCCcEEEE-CCcHHHHHHHHHHHHcCCCCCCCEEEEEE
Confidence 999999998764321111111 124444455666654 3 5677765 4556678899999999987544 334444
Q ss_pred C
Q 002211 277 T 277 (953)
Q Consensus 277 ~ 277 (953)
|
T Consensus 224 d 224 (287)
T 3bbl_A 224 D 224 (287)
T ss_dssp S
T ss_pred C
Confidence 4
No 112
>2hsg_A Glucose-resistance amylase regulator; CCPA, transcriptional regulator, transcription regulator; 2.50A {Bacillus megaterium} SCOP: a.35.1.5 c.93.1.1 PDB: 1rzr_G 2jcg_A 1zvv_A 3oqo_A* 3oqm_A* 3oqn_A*
Probab=98.06 E-value=4.3e-05 Score=83.05 Aligned_cols=212 Identities=12% Similarity=0.011 Sum_probs=134.4
Q ss_pred CCceEEEeEEEec-CCCchhHHHHHHHHHHHHHhcCCCCCCCcEEEEEEecCCCChHHHHHHHHHHHhcCcEEEEccCCh
Q 002211 46 KPEVLNVGAIFSF-GTVNGQVSRIAMKAAQDDINSDPRVLGGRKLSITMHDAKFNGFLSIMGALQFMETDTLAIVGPQSA 124 (953)
Q Consensus 46 ~~~~i~IG~l~~~-~~~~g~~~~~a~~lAve~iN~~g~il~g~~l~l~~~D~~~~~~~a~~~a~~li~~~v~aiiGp~~S 124 (953)
.....+||++.|. +..+......+++-+.++. |+++.+ .++..++.........++.+++.+||-....
T Consensus 57 ~~~~~~Ig~i~~~~~~~~~~~~~~gi~~~a~~~--------g~~~~~--~~~~~~~~~~~~~~~~l~~~~vdgiI~~~~~ 126 (332)
T 2hsg_A 57 SKKTTTVGVIIPDISNIFYAELARGIEDIATMY--------KYNIIL--SNSDQNQDKELHLLNNMLGKQVDGIIFMSGN 126 (332)
T ss_dssp TC-CCEEEEEEC--CCSHHHHHHHHHHHHHHHH--------TCEEEE--EECCSHHHHHHHHHHHTSCCSSCCEEECCSS
T ss_pred hCCCCEEEEEeCCCCCcHHHHHHHHHHHHHHHc--------CCEEEE--EeCCCChHHHHHHHHHHHhCCCcEEEEecCC
Confidence 3456789999985 4556667778888877763 566554 4666666666666667777788887753322
Q ss_pred hhHHHHHHhhhhCCCcEEEeecCCCCCCCCCCCcEEEccCChHHHHHHHHHHHHHcCCcEEEEEEecC---ccccchHHH
Q 002211 125 VMAHVLSHLANELQVPLLSFTALDPTLSPLQYPFFVQTAPNDLYLMSAIAEMVSYFGWGEVIAIFNDD---DQGRNGVTA 201 (953)
Q Consensus 125 ~~a~av~~v~~~~~vP~Is~~at~~~ls~~~~p~~fr~~p~d~~~~~ai~~~l~~~~w~~vaii~~d~---~~g~~~~~~ 201 (953)
... .....+...++|+|......+ +... ..+..++...+..+++++...|.+++++|..+. .......+.
T Consensus 127 ~~~-~~~~~l~~~~iPvV~~~~~~~---~~~~---~~V~~D~~~~~~~a~~~L~~~G~~~I~~i~~~~~~~~~~~~R~~G 199 (332)
T 2hsg_A 127 VTE-EHVEELKKSPVPVVLAASIES---TNQI---PSVTIDYEQAAFDAVQSLIDSGHKNIAFVSGTLEEPINHAKKVKG 199 (332)
T ss_dssp CCH-HHHHHHTTSSSCEEEESCCCS---CTTS---CEEEECHHHHHHHHHHHHHTTTCSCEEEEESCTTSHHHHTTHHHH
T ss_pred CCH-HHHHHHHhCCCCEEEEccccC---CCCC---CEEEEChHHHHHHHHHHHHHCCCCEEEEEeCCcccCccHHHHHHH
Confidence 222 233445668999998754332 1122 234456667778888898888999999998653 335567889
Q ss_pred HHHHHHhcCcEEEEEEecCCCCCCChHHHHHHHHHHhcC--CceEEEEEcchhhHHHHHHHHHHcCCCCCceE-EEEeC
Q 002211 202 LGDKLAEIRCKISYKSALPPDQSVTETDVRNELVKVRMM--EARVIVVHGYSRTGLMVFDVAQRLGMMDSGYV-WIATT 277 (953)
Q Consensus 202 l~~~l~~~g~~v~~~~~~~~~~~~~~~d~~~~l~~i~~~--~~~vii~~~~~~~~~~~~~~a~~~g~~~~~~~-wi~~~ 277 (953)
|.+++++.|+.+.....+..+ .+..+-...+.++.+. ++++|+. .+...+..+++++++.|+..++-+ .++.|
T Consensus 200 f~~al~~~g~~~~~~~~~~~~--~~~~~~~~~~~~ll~~~~~~~ai~~-~nd~~A~g~~~al~~~G~~vP~disvvg~D 275 (332)
T 2hsg_A 200 YKRALTESGLPVRDSYIVEGD--YTYDSGIEAVEKLLEEDEKPTAIFV-GTDEMALGVIHGAQDRGLNVPNDLEIIGFD 275 (332)
T ss_dssp HHHHHHTTTCCCCGGGEEECC--SSHHHHHHHHHHHHHSSSCCSEEEE-SSHHHHHHHHHHHHHTTCCHHHHCEEEEES
T ss_pred HHHHHHHcCCCCChheEEeCC--CCHHHHHHHHHHHHcCCCCCeEEEE-CChHHHHHHHHHHHHcCCCCCCCeEEEEEC
Confidence 999999998764311111111 1234444556666544 5777774 556678889999999998644333 34433
No 113
>1jx6_A LUXP protein; protein-ligand complex, signaling protein; HET: AI2; 1.50A {Vibrio harveyi} SCOP: c.93.1.1 PDB: 1zhh_A* 2hj9_A*
Probab=98.05 E-value=0.00023 Score=77.57 Aligned_cols=208 Identities=5% Similarity=-0.035 Sum_probs=132.8
Q ss_pred CCceEEEeEEEec--CCCchhHHHHHHHHHHHHHhcCCCCCCCcEEEEEEecCC--CChHHHHHHHHHHHhcCcEEEEcc
Q 002211 46 KPEVLNVGAIFSF--GTVNGQVSRIAMKAAQDDINSDPRVLGGRKLSITMHDAK--FNGFLSIMGALQFMETDTLAIVGP 121 (953)
Q Consensus 46 ~~~~i~IG~l~~~--~~~~g~~~~~a~~lAve~iN~~g~il~g~~l~l~~~D~~--~~~~~a~~~a~~li~~~v~aiiGp 121 (953)
.....+||++.|. +..+-.....+++-+.++. |+++.+...++. .++..-......++++++.+||-+
T Consensus 40 ~~~~~~Igvi~~~~~~~~~~~~~~~gi~~~a~~~--------g~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~vdgiIi~ 111 (342)
T 1jx6_A 40 TQRPIKISVVYPGQQVSDYWVRNIASFEKRLYKL--------NINYQLNQVFTRPNADIKQQSLSLMEALKSKSDYLIFT 111 (342)
T ss_dssp CSSCEEEEEEECCCSSCCHHHHHHHHHHHHHHHT--------TCCEEEEEEECCTTCCHHHHHHHHHHHHHTTCSEEEEC
T ss_pred cCCceEEEEEecCCcccHHHHHHHHHHHHHHHHc--------CCeEEEEecCCCCccCHHHHHHHHHHHHhcCCCEEEEe
Confidence 4557899999985 4555556677777766652 567777665665 677777777788888899988875
Q ss_pred CChhhHHHHHHhhhhCCCcEEEeecC-CCCCCCCCCCcEEEccCChHHHHHHHHHHHHHc-C-CcEEEEEEecCc-cccc
Q 002211 122 QSAVMAHVLSHLANELQVPLLSFTAL-DPTLSPLQYPFFVQTAPNDLYLMSAIAEMVSYF-G-WGEVIAIFNDDD-QGRN 197 (953)
Q Consensus 122 ~~S~~a~av~~v~~~~~vP~Is~~at-~~~ls~~~~p~~fr~~p~d~~~~~ai~~~l~~~-~-w~~vaii~~d~~-~g~~ 197 (953)
..+.........+.+.++|.|..... .|.......+.+..+..++...+..+++++... | -+++++|..... ....
T Consensus 112 ~~~~~~~~~~~~~~~~~ip~V~~~~~~~~~~~~~~~~~~~~V~~D~~~~g~~a~~~L~~~~Gg~~~I~~i~~~~~~~~~~ 191 (342)
T 1jx6_A 112 LDTTRHRKFVEHVLDSTNTKLILQNITTPVREWDKHQPFLYVGFDHAEGSRELATEFGKFFPKHTYYSVLYFSEGYISDV 191 (342)
T ss_dssp CSSSTTHHHHHHHHHHCSCEEEEETCCSCBGGGTTSCCSEEEECCHHHHHHHHHHHHHHHSCTTCEEEEECCSTTHHHHH
T ss_pred CChHhHHHHHHHHHHcCCCEEEEecCCCcccccccCCCceEEecCcHHHHHHHHHHHHHHcCCCceEEEEEcCCcchhhH
Confidence 54432233344455678999876332 221000012233445667777788888987774 7 999999975432 3445
Q ss_pred hHHHHHHHHHhcCc-EEEEEEecCCCCCCChHHHHHHHHHHhc--CCceEEEEEcchhhHHHHHHHHHHcCC
Q 002211 198 GVTALGDKLAEIRC-KISYKSALPPDQSVTETDVRNELVKVRM--MEARVIVVHGYSRTGLMVFDVAQRLGM 266 (953)
Q Consensus 198 ~~~~l~~~l~~~g~-~v~~~~~~~~~~~~~~~d~~~~l~~i~~--~~~~vii~~~~~~~~~~~~~~a~~~g~ 266 (953)
..+.|.+++++.|. +.... +... .+..+-...+.++.+ .++++|+. .+...+..++++++++|+
T Consensus 192 R~~Gf~~~l~~~~~~~~~~~--~~~~--~~~~~~~~~~~~~l~~~~~~~ai~~-~nd~~A~g~~~al~~~g~ 258 (342)
T 1jx6_A 192 RGDTFIHQVNRDNNFELQSA--YYTK--ATKQSGYDAAKASLAKHPDVDFIYA-CSTDVALGAVDALAELGR 258 (342)
T ss_dssp HHHHHHHHHHHHHCCEEEEE--ECCC--SSHHHHHHHHHHHHHHCCCCSEEEE-SSHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHhCCCcEEEEE--ecCC--CCHHHHHHHHHHHHHhCCCccEEEE-CCChhHHHHHHHHHHcCC
Confidence 67889999998886 33222 2222 224444445555543 34677664 455668889999999997
No 114
>3m9w_A D-xylose-binding periplasmic protein; xylose binding protein, conformational changes, SUGA protein; 2.15A {Escherichia coli} PDB: 3m9x_A* 3ma0_A*
Probab=98.04 E-value=0.00031 Score=75.45 Aligned_cols=200 Identities=9% Similarity=0.007 Sum_probs=134.0
Q ss_pred eEEEeEEEec-CCCchhHHHHHHHHHHHHHhcCCCCCCCcEEEEEEecCCCChHHHHHHHHHHHhcCcEEEEc-cCChhh
Q 002211 49 VLNVGAIFSF-GTVNGQVSRIAMKAAQDDINSDPRVLGGRKLSITMHDAKFNGFLSIMGALQFMETDTLAIVG-PQSAVM 126 (953)
Q Consensus 49 ~i~IG~l~~~-~~~~g~~~~~a~~lAve~iN~~g~il~g~~l~l~~~D~~~~~~~a~~~a~~li~~~v~aiiG-p~~S~~ 126 (953)
..+||+++|. +..+-.....+++-+.++. |+++. +.++..++....+....++++++.+||- |.....
T Consensus 2 ~~~Igvi~~~~~~~~~~~~~~gi~~~a~~~--------g~~~~--~~~~~~~~~~~~~~i~~l~~~~vdgiIi~~~~~~~ 71 (313)
T 3m9w_A 2 EVKIGMAIDDLRLERWQKDRDIFVKKAESL--------GAKVF--VQSANGNEETQMSQIENMINRGVDVLVIIPYNGQV 71 (313)
T ss_dssp -CEEEEEESCCSSSTTHHHHHHHHHHHHHT--------SCEEE--EEECTTCHHHHHHHHHHHHHTTCSEEEEECSSTTS
T ss_pred CcEEEEEeCCCCChHHHHHHHHHHHHHHHc--------CCEEE--EECCCCCHHHHHHHHHHHHHcCCCEEEEeCCChhh
Confidence 3579999996 4566667788888888773 55555 5567778888888888888888888774 333333
Q ss_pred HHHHHHhhhhCCCcEEEeecCCCCCCCCCCCcEEEccCChHHHHHHHHHHHH-HcCCcEEEEEEecC--ccccchHHHHH
Q 002211 127 AHVLSHLANELQVPLLSFTALDPTLSPLQYPFFVQTAPNDLYLMSAIAEMVS-YFGWGEVIAIFNDD--DQGRNGVTALG 203 (953)
Q Consensus 127 a~av~~v~~~~~vP~Is~~at~~~ls~~~~p~~fr~~p~d~~~~~ai~~~l~-~~~w~~vaii~~d~--~~g~~~~~~l~ 203 (953)
.......+.+.++|+|......+. ... ...+..++...+..+++++. ..|-+++++|.... .......+.|.
T Consensus 72 ~~~~~~~~~~~~iPvV~~~~~~~~---~~~--~~~V~~D~~~~g~~a~~~L~~~~G~~~i~~i~g~~~~~~~~~R~~Gf~ 146 (313)
T 3m9w_A 72 LSNVVKEAKQEGIKVLAYDRMIND---ADI--DFYISFDNEKVGELQAKALVDIVPQGNYFLMGGSPVDNNAKLFRAGQM 146 (313)
T ss_dssp CHHHHHHHHTTTCEEEEESSCCTT---SCC--SEEEEECHHHHHHHHHHHHHHHCSSEEEEEEESCTTCHHHHHHHHHHH
T ss_pred hHHHHHHHHHCCCeEEEECCcCCC---CCc--eEEEecCHHHHHHHHHHHHHHhCCCCcEEEEECCCCCccHHHHHHHHH
Confidence 344556677889999987654322 112 13445677777888898877 89999999998543 33445678888
Q ss_pred HHHHhc----CcEEEEEEecCCCCCCChHHHHHHHHHHhc---CCceEEEEEcchhhHHHHHHHHHHcCCC
Q 002211 204 DKLAEI----RCKISYKSALPPDQSVTETDVRNELVKVRM---MEARVIVVHGYSRTGLMVFDVAQRLGMM 267 (953)
Q Consensus 204 ~~l~~~----g~~v~~~~~~~~~~~~~~~d~~~~l~~i~~---~~~~vii~~~~~~~~~~~~~~a~~~g~~ 267 (953)
+++++. ++++..... ... .+.......+.++.+ .++++|+.. +...+..++++++++|+.
T Consensus 147 ~~l~~~~~~~~~~~~~~~~-~~~--~~~~~~~~~~~~~l~~~~~~~~ai~~~-~d~~a~g~~~al~~~G~~ 213 (313)
T 3m9w_A 147 KVLKPYVDSGKIKVVGDQW-VDG--WLPENALKIMENALTANNNKIDAVVAS-NDATAGGAIQALSAQGLS 213 (313)
T ss_dssp HHHHHHHHTTSEEEEEEEE-CGG--GCHHHHHHHHHHHHHHTTTCCCEEEES-SHHHHHHHHHHHHTTTCT
T ss_pred HHHHhhccCCCEEEEeecc-CCC--cCHHHHHHHHHHHHHhCCCCeeEEEEC-CCchHHHHHHHHHHcCCC
Confidence 999887 577654432 211 123444444555543 356766544 556777899999999986
No 115
>3k4h_A Putative transcriptional regulator; structural genomics, protein structure INI NEW YORK structural genomix research consortium; HET: MAL; 2.80A {Bacillus cytotoxicus nvh 391-98}
Probab=98.03 E-value=9.4e-05 Score=78.60 Aligned_cols=207 Identities=12% Similarity=0.037 Sum_probs=134.6
Q ss_pred CceEEEeEEEec------CCCchhHHHHHHHHHHHHHhcCCCCCCCcEEEEEEecCCCChHHHHHHHHHHHhcCcEEEEc
Q 002211 47 PEVLNVGAIFSF------GTVNGQVSRIAMKAAQDDINSDPRVLGGRKLSITMHDAKFNGFLSIMGALQFMETDTLAIVG 120 (953)
Q Consensus 47 ~~~i~IG~l~~~------~~~~g~~~~~a~~lAve~iN~~g~il~g~~l~l~~~D~~~~~~~a~~~a~~li~~~v~aiiG 120 (953)
...-+||+++|. +..+-.....+++-+.++. |+++. +.++..++..-......+.++++.+||-
T Consensus 6 ~~~~~Igvi~~~~~~~~~~~~~~~~~~~gi~~~a~~~--------g~~~~--~~~~~~~~~~~~~~~~~~~~~~vdgiIi 75 (292)
T 3k4h_A 6 QTTKTLGLVMPSSASKAFQNPFFPEVIRGISSFAHVE--------GYALY--MSTGETEEEIFNGVVKMVQGRQIGGIIL 75 (292)
T ss_dssp -CCCEEEEECSSCHHHHTTSTHHHHHHHHHHHHHHHT--------TCEEE--ECCCCSHHHHHHHHHHHHHTTCCCEEEE
T ss_pred CCCCEEEEEecCCccccccCHHHHHHHHHHHHHHHHc--------CCEEE--EEeCCCCHHHHHHHHHHHHcCCCCEEEE
Confidence 346789999997 3445556677777776663 55554 4666666665555666667778888774
Q ss_pred cCChhhHHHHHHhhhhCCCcEEEeecCCCCCCCCCCCcEEEccCChHHHHHHHHHHHHHcCCcEEEEEEecCc--cccch
Q 002211 121 PQSAVMAHVLSHLANELQVPLLSFTALDPTLSPLQYPFFVQTAPNDLYLMSAIAEMVSYFGWGEVIAIFNDDD--QGRNG 198 (953)
Q Consensus 121 p~~S~~a~av~~v~~~~~vP~Is~~at~~~ls~~~~p~~fr~~p~d~~~~~ai~~~l~~~~w~~vaii~~d~~--~g~~~ 198 (953)
...... ......+...++|+|......+.. +.+..+..++...+..+++++...|-++++++..... .....
T Consensus 76 ~~~~~~-~~~~~~l~~~~iPvV~~~~~~~~~-----~~~~~V~~D~~~~g~~a~~~L~~~G~~~i~~i~~~~~~~~~~~R 149 (292)
T 3k4h_A 76 LYSREN-DRIIQYLHEQNFPFVLIGKPYDRK-----DEITYVDNDNYTAAREVAEYLISLGHKQIAFIGGGSDLLVTRDR 149 (292)
T ss_dssp SCCBTT-CHHHHHHHHTTCCEEEESCCSSCT-----TTSCEEECCHHHHHHHHHHHHHHTTCCCEEEEESCTTBHHHHHH
T ss_pred eCCCCC-hHHHHHHHHCCCCEEEECCCCCCC-----CCCCEEEECcHHHHHHHHHHHHHCCCceEEEEeCcccchhHHHH
Confidence 222222 244566777899999875443221 1133455677778888999998899999999985433 34566
Q ss_pred HHHHHHHHHhcCcEEEEEEecCCCCCCChHHHHHHHHHHhcC--CceEEEEEcchhhHHHHHHHHHHcCCCCCceE
Q 002211 199 VTALGDKLAEIRCKISYKSALPPDQSVTETDVRNELVKVRMM--EARVIVVHGYSRTGLMVFDVAQRLGMMDSGYV 272 (953)
Q Consensus 199 ~~~l~~~l~~~g~~v~~~~~~~~~~~~~~~d~~~~l~~i~~~--~~~vii~~~~~~~~~~~~~~a~~~g~~~~~~~ 272 (953)
.+.|.+++++.|+.+.....+... .+..+....+.++.+. ++++|+ +.+...+..++++++++|+..++-+
T Consensus 150 ~~gf~~~l~~~g~~~~~~~~~~~~--~~~~~~~~~~~~~l~~~~~~~ai~-~~~d~~a~g~~~al~~~g~~vP~di 222 (292)
T 3k4h_A 150 LAGMSDALKLADIVLPKEYILHFD--FSRESGQQAVEELMGLQQPPTAIM-ATDDLIGLGVLSALSKKGFVVPKDV 222 (292)
T ss_dssp HHHHHHHHHHTTCCCCGGGEEECC--SSHHHHHHHHHHHHTSSSCCSEEE-ESSHHHHHHHHHHHHHTTCCTTTTC
T ss_pred HHHHHHHHHHcCCCCChheEEecC--CCHHHHHHHHHHHHcCCCCCcEEE-EcChHHHHHHHHHHHHhCCCCCCeE
Confidence 789999999998764321111111 2245555666666554 567766 4556677889999999998754433
No 116
>3o74_A Fructose transport system repressor FRUR; dual transcriptional regulator, DNA, transcription; 2.00A {Pseudomonas putida} PDB: 3o75_A*
Probab=98.02 E-value=0.00022 Score=74.83 Aligned_cols=207 Identities=9% Similarity=-0.065 Sum_probs=137.0
Q ss_pred EEEeEEEecC-CCchhHHHHHHHHHHHHHhcCCCCCCCcEEEEEEecCCCChHHHHHHHHHHHhcCcEEEEccCChhhHH
Q 002211 50 LNVGAIFSFG-TVNGQVSRIAMKAAQDDINSDPRVLGGRKLSITMHDAKFNGFLSIMGALQFMETDTLAIVGPQSAVMAH 128 (953)
Q Consensus 50 i~IG~l~~~~-~~~g~~~~~a~~lAve~iN~~g~il~g~~l~l~~~D~~~~~~~a~~~a~~li~~~v~aiiGp~~S~~a~ 128 (953)
-+||+++|-. ..+-.....+++-+.++. |+++.+ .++..++..-.+....++++++.+||-........
T Consensus 3 ~~Igvi~~~~~~~~~~~~~~gi~~~a~~~--------g~~~~~--~~~~~~~~~~~~~~~~l~~~~vdgiIi~~~~~~~~ 72 (272)
T 3o74_A 3 RTLGFILPDLENPSYARIAKQLEQGARAR--------GYQLLI--ASSDDQPDSERQLQQLFRARRCDALFVASCLPPED 72 (272)
T ss_dssp CEEEEEESCTTCHHHHHHHHHHHHHHHHT--------TCEEEE--EECTTCHHHHHHHHHHHHHTTCSEEEECCCCCSSC
T ss_pred eEEEEEeCCCcChhHHHHHHHHHHHHHHC--------CCEEEE--EeCCCCHHHHHHHHHHHHHcCCCEEEEecCccccH
Confidence 3699999864 444556677777776662 566654 56667787777778888888888877433221123
Q ss_pred HHHHhhhhCCCcEEEeecCCCCCCCCCCCcEEEccCChHHHHHHHHHHHHHcCCcEEEEEEecC--ccccchHHHHHHHH
Q 002211 129 VLSHLANELQVPLLSFTALDPTLSPLQYPFFVQTAPNDLYLMSAIAEMVSYFGWGEVIAIFNDD--DQGRNGVTALGDKL 206 (953)
Q Consensus 129 av~~v~~~~~vP~Is~~at~~~ls~~~~p~~fr~~p~d~~~~~ai~~~l~~~~w~~vaii~~d~--~~g~~~~~~l~~~l 206 (953)
.....+.+.++|+|......+ +.. +-.+..++...+..+++++...|-++++++.... .......+.|.+++
T Consensus 73 ~~~~~~~~~~iPvV~~~~~~~---~~~---~~~V~~d~~~~~~~a~~~L~~~G~~~i~~i~~~~~~~~~~~R~~gf~~~l 146 (272)
T 3o74_A 73 DSYRELQDKGLPVIAIDRRLD---PAH---FCSVISDDRDASRQLAASLLSSAPRSIALIGARPELSVSQARAGGFDEAL 146 (272)
T ss_dssp CHHHHHHHTTCCEEEESSCCC---TTT---CEEEEECHHHHHHHHHHHHHTTCCSEEEEEEECTTSHHHHHHHHHHHHHT
T ss_pred HHHHHHHHcCCCEEEEccCCC---ccc---cCEEEEchHHHHHHHHHHHHHCCCcEEEEEecCCCCccHHHHHHHHHHHH
Confidence 344566778999998754332 112 2335567777788889999999999999998653 34556788999999
Q ss_pred HhcCcEEEEEEecCCCCCCChHHHHHHHHHHhc--C-CceEEEEEcchhhHHHHHHHHHHcCCCCCceEEEEeC
Q 002211 207 AEIRCKISYKSALPPDQSVTETDVRNELVKVRM--M-EARVIVVHGYSRTGLMVFDVAQRLGMMDSGYVWIATT 277 (953)
Q Consensus 207 ~~~g~~v~~~~~~~~~~~~~~~d~~~~l~~i~~--~-~~~vii~~~~~~~~~~~~~~a~~~g~~~~~~~wi~~~ 277 (953)
++.|+++.....-... .++....+.++.+ . .+++|+. .+...+..++++++++|+...+...++.|
T Consensus 147 ~~~~~~~~~~~~~~~~----~~~~~~~~~~~l~~~~~~~~ai~~-~~d~~a~g~~~al~~~g~vp~di~vvg~d 215 (272)
T 3o74_A 147 QGYTGEVRRYQGEAFS----RECGQRLMQQLIDDLGGLPDALVT-TSYVLLQGVFDTLQARPVDSRQLQLGTFG 215 (272)
T ss_dssp TTCCSEEEEEEESSSS----HHHHHHHHHHHHHHHTSCCSEEEE-SSHHHHHHHHHHHHTSCGGGCCCEEEEES
T ss_pred HHcCCChheeecCCCC----HHHHHHHHHHHHhcCCCCCcEEEE-eCchHHHHHHHHHHHcCCCccceEEEEeC
Confidence 9999876543322222 4444455555543 2 4787765 45667888999999999832334444444
No 117
>3ctp_A Periplasmic binding protein/LACI transcriptional; structural genomics, protein structure initiative; HET: XLF; 1.41A {Alkaliphilus metalliredigens}
Probab=98.00 E-value=4.8e-05 Score=82.64 Aligned_cols=203 Identities=8% Similarity=0.016 Sum_probs=131.0
Q ss_pred CceEEEeEEEecC-CCchhHHHHHHHHHHHHHhcCCCCCCCcEEEEEEecCCCChHHHHHHHHHHHhcCcEEEEccCChh
Q 002211 47 PEVLNVGAIFSFG-TVNGQVSRIAMKAAQDDINSDPRVLGGRKLSITMHDAKFNGFLSIMGALQFMETDTLAIVGPQSAV 125 (953)
Q Consensus 47 ~~~i~IG~l~~~~-~~~g~~~~~a~~lAve~iN~~g~il~g~~l~l~~~D~~~~~~~a~~~a~~li~~~v~aiiGp~~S~ 125 (953)
....+||++.|.. ..+......+++-+.++. |+++.+ .++..++.........++.+++.+|| .....
T Consensus 58 ~~~~~Igvi~~~~~~~~~~~~~~gi~~~~~~~--------g~~~~~--~~~~~~~~~~~~~~~~l~~~~vdgiI-~~~~~ 126 (330)
T 3ctp_A 58 KNSKTIGLMVPNISNPFFNQMASVIEEYAKNK--------GYTLFL--CNTDDDKEKEKTYLEVLQSHRVAGII-ASRSQ 126 (330)
T ss_dssp --CCEEEEEESCTTSHHHHHHHHHHHHHHHHT--------TCEEEE--EECTTCHHHHHHHHHHHHHTTCSEEE-EETCC
T ss_pred CCCCEEEEEeCCCCCcHHHHHHHHHHHHHHHC--------CCEEEE--EeCCCChHHHHHHHHHHHhCCCCEEE-ECCCC
Confidence 4567899999863 444556677777776652 566654 56677877777777888888999988 43322
Q ss_pred hHHHHHHhhhhCCCcEEEeecCCCCCCCCCCCcEEEccCChHHHHHHHHHHHHHcCCcEEEEEEecC--ccccchHHHHH
Q 002211 126 MAHVLSHLANELQVPLLSFTALDPTLSPLQYPFFVQTAPNDLYLMSAIAEMVSYFGWGEVIAIFNDD--DQGRNGVTALG 203 (953)
Q Consensus 126 ~a~av~~v~~~~~vP~Is~~at~~~ls~~~~p~~fr~~p~d~~~~~ai~~~l~~~~w~~vaii~~d~--~~g~~~~~~l~ 203 (953)
.. +.+...++|+|......+. ..+ .+..++...+..+++++...|.+++++|.... .......+.|.
T Consensus 127 ~~----~~l~~~~iPvV~~~~~~~~----~~~---~V~~D~~~~~~~a~~~L~~~G~~~I~~i~~~~~~~~~~~R~~Gf~ 195 (330)
T 3ctp_A 127 CE----DEYANIDIPVVAFENHILD----NII---TISSDNYNGGRMAFDHLYEKGCRKILHIKGPEVFEATELRYKGFL 195 (330)
T ss_dssp CS----GGGTTCCSCEEEESSCCCT----TSC---EEEECHHHHHHHHHHHHHHTTCCSEEEEECCTTCHHHHHHHHHHH
T ss_pred CH----HHHHhcCCCEEEEeccCCC----CCC---EEEeCHHHHHHHHHHHHHHCCCCeEEEEeCCccCccHHHHHHHHH
Confidence 21 2345779999987654321 223 34456666678888988888999999998653 34556788999
Q ss_pred HHHHhcCcEEEEEEecCCCCCCChHHHHHHHHHHhc-CCceEEEEEcchhhHHHHHHHHHHcCCCCCceEEEE
Q 002211 204 DKLAEIRCKISYKSALPPDQSVTETDVRNELVKVRM-MEARVIVVHGYSRTGLMVFDVAQRLGMMDSGYVWIA 275 (953)
Q Consensus 204 ~~l~~~g~~v~~~~~~~~~~~~~~~d~~~~l~~i~~-~~~~vii~~~~~~~~~~~~~~a~~~g~~~~~~~wi~ 275 (953)
+++++.|+.+. ...+... .+..+-...+.++.+ .++++|+.. +...+..+++++++.|+..++-+-+.
T Consensus 196 ~al~~~g~~~~-~~~~~~~--~~~~~~~~~~~~ll~~~~~~ai~~~-~d~~A~g~~~al~~~G~~vP~disvv 264 (330)
T 3ctp_A 196 DGARAKDLEID-FIEFQHD--FQVKMLEEDINSMKDIVNYDGIFVF-NDIAAATVMRALKKRGVSIPQEVQII 264 (330)
T ss_dssp HHHHHTTCCCE-EEECSSS--CCGGGGGCCCTTGGGGGGSSEEEES-SHHHHHHHHHHHHHTTCCTTTTCEEE
T ss_pred HHHHHcCCCcc-eeEEcCC--CCHHHHHHHHHHHhcCCCCcEEEEC-CHHHHHHHHHHHHHcCCCCCCCeEEE
Confidence 99999998665 3223222 112222222333333 367887754 45567789999999998765444333
No 118
>1qpz_A PURA, protein (purine nucleotide synthesis repressor); transcription regulation, DNA-binding, purine biosynthesis; HET: DNA HPA; 2.50A {Escherichia coli} SCOP: a.35.1.5 c.93.1.1 PDB: 1bdi_A* 1qp0_A* 1qp4_A* 1pnr_A* 1wet_A* 1zay_A* 1vpw_A* 2pue_A* 2puf_A* 2pug_A* 1bdh_A* 1qp7_A* 1qqa_A* 1qqb_A* 2puc_A* 2pua_A* 2pub_A* 2pud_A* 1jfs_A* 1jh9_A* ...
Probab=97.95 E-value=0.00028 Score=76.88 Aligned_cols=207 Identities=11% Similarity=-0.001 Sum_probs=132.4
Q ss_pred ceEEEeEEEecC-CCchhHHHHHHHHHHHHHhcCCCCCCCcEEEEEEecCCCChHHHHHHHHHHHhcCcEEEEccCChhh
Q 002211 48 EVLNVGAIFSFG-TVNGQVSRIAMKAAQDDINSDPRVLGGRKLSITMHDAKFNGFLSIMGALQFMETDTLAIVGPQSAVM 126 (953)
Q Consensus 48 ~~i~IG~l~~~~-~~~g~~~~~a~~lAve~iN~~g~il~g~~l~l~~~D~~~~~~~a~~~a~~li~~~v~aiiGp~~S~~ 126 (953)
..-+||++.|.. ..+......+++-+.++. |+++.+ .++..++.........++++++.+||-......
T Consensus 57 ~~~~Igvi~~~~~~~~~~~~~~gi~~~a~~~--------g~~~~~--~~~~~~~~~~~~~~~~l~~~~vdgiI~~~~~~~ 126 (340)
T 1qpz_A 57 HTKSIGLLATSSEAAYFAEIIEAVEKNCFQK--------GYTLIL--GNAWNNLEKQRAYLSMMAQKRVDGLLVMCSEYP 126 (340)
T ss_dssp CCSEEEEEESCSCSHHHHHHHHHHHHHHHHT--------TCEEEE--EECTTCHHHHHHHHHHHHHTTCSEEEECCSCCC
T ss_pred CCCEEEEEeCCCCChHHHHHHHHHHHHHHHc--------CCEEEE--EeCCCCHHHHHHHHHHHHcCCCCEEEEeCCCCC
Confidence 456899999863 444556677777776652 566654 567777777767777788888988884222211
Q ss_pred HHHHHHhhhh-CCCcEEEeecCCCCCCCCCCCcEEEccCChHHHHHHHHHHHHHcCCcEEEEEEecC--ccccchHHHHH
Q 002211 127 AHVLSHLANE-LQVPLLSFTALDPTLSPLQYPFFVQTAPNDLYLMSAIAEMVSYFGWGEVIAIFNDD--DQGRNGVTALG 203 (953)
Q Consensus 127 a~av~~v~~~-~~vP~Is~~at~~~ls~~~~p~~fr~~p~d~~~~~ai~~~l~~~~w~~vaii~~d~--~~g~~~~~~l~ 203 (953)
. .......+ .++|+|......+. . ++...+..++...+..+++++...|.+++++|.... .......+.|.
T Consensus 127 ~-~~~~~l~~~~~iPvV~~~~~~~~---~--~~~~~V~~D~~~~~~~a~~~L~~~G~~~I~~i~g~~~~~~~~~R~~Gf~ 200 (340)
T 1qpz_A 127 E-PLLAMLEEYRHIPMVVMDWGEAK---A--DFTDAVIDNAFEGGYMAGRYLIERGHREIGVIPGPLERNTGAGRLAGFM 200 (340)
T ss_dssp H-HHHHHHHTTTTSCEEEEEESSCC---C--SSSEEEECCHHHHHHHHHHHHHHHTCCCEEEECCCTTSHHHHHHHHHHH
T ss_pred h-HHHHHHHhhCCCCEEEEecccCC---C--CCCCEEEECHHHHHHHHHHHHHHCCCCEEEEEeCCCccccHHHHHHHHH
Confidence 1 22333333 69999987654321 1 222345566777778888888888999999997542 23456678899
Q ss_pred HHHHhcCcEEEEEEecCCCCCCChHHHHHHHHHHhc--CCceEEEEEcchhhHHHHHHHHHHcCCCCCceEE
Q 002211 204 DKLAEIRCKISYKSALPPDQSVTETDVRNELVKVRM--MEARVIVVHGYSRTGLMVFDVAQRLGMMDSGYVW 273 (953)
Q Consensus 204 ~~l~~~g~~v~~~~~~~~~~~~~~~d~~~~l~~i~~--~~~~vii~~~~~~~~~~~~~~a~~~g~~~~~~~w 273 (953)
+++++.|+.+.....+..+ .+..+-...+.++.+ .++++|+. .+...+..+++++++.|+..++-+-
T Consensus 201 ~al~~~g~~~~~~~~~~~~--~~~~~~~~~~~~ll~~~~~~~ai~~-~nd~~A~g~~~al~~~G~~vP~dis 269 (340)
T 1qpz_A 201 KAMEEAMIKVPESWIVQGD--FEPESGYRAMQQILSQPHRPTAVFC-GGDIMAMGALCAADEMGLRVPQDVS 269 (340)
T ss_dssp HHHHHTTCCCCGGGBCCCC--SSHHHHHHHHHHHHTSSSCCSEEEE-SSHHHHHHHHHHHHHTTCCTTTTCE
T ss_pred HHHHHCCCCCChhheEeCC--CCHHHHHHHHHHHHcCCCCCcEEEE-CCHHHHHHHHHHHHHcCCCCCCCeE
Confidence 9999998764321112211 223444455666654 35777765 4556677899999999987554433
No 119
>3egc_A Putative ribose operon repressor; structural genomics, unknown function, DNA-binding, transcri transcription regulation, PSI-2; 2.35A {Burkholderia thailandensis}
Probab=97.89 E-value=0.0001 Score=78.26 Aligned_cols=211 Identities=12% Similarity=0.034 Sum_probs=135.0
Q ss_pred CceEEEeEEEecC-CCchhHHHHHHHHHHHHHhcCCCCCCCcEEEEEEecCCCChHHHHHHHHHHHhcCcEEEEccCChh
Q 002211 47 PEVLNVGAIFSFG-TVNGQVSRIAMKAAQDDINSDPRVLGGRKLSITMHDAKFNGFLSIMGALQFMETDTLAIVGPQSAV 125 (953)
Q Consensus 47 ~~~i~IG~l~~~~-~~~g~~~~~a~~lAve~iN~~g~il~g~~l~l~~~D~~~~~~~a~~~a~~li~~~v~aiiGp~~S~ 125 (953)
...-+||+++|-. ..+-.....+++-+.++. |+++. +.++..++....+....++++++.+||-.....
T Consensus 6 ~~~~~Igvv~~~~~~~~~~~~~~gi~~~a~~~--------g~~~~--~~~~~~~~~~~~~~~~~l~~~~vdgiIi~~~~~ 75 (291)
T 3egc_A 6 KRSNVVGLIVSDIENVFFAEVASGVESEARHK--------GYSVL--LANTAEDIVREREAVGQFFERRVDGLILAPSEG 75 (291)
T ss_dssp -CCCEEEEEESCTTSHHHHHHHHHHHHHHHHT--------TCEEE--EEECTTCHHHHHHHHHHHHHTTCSEEEECCCSS
T ss_pred CCCcEEEEEECCCcchHHHHHHHHHHHHHHHC--------CCEEE--EEeCCCCHHHHHHHHHHHHHCCCCEEEEeCCCC
Confidence 3467899999864 444456667777776662 55555 556777887777777888888888887433322
Q ss_pred hHHHHHHhhhhCCCcEEEeecCCCCCCCCCCCcEEEccCChHHHHHHHHHHHHHcCCcEEEEEEecC--ccccchHHHHH
Q 002211 126 MAHVLSHLANELQVPLLSFTALDPTLSPLQYPFFVQTAPNDLYLMSAIAEMVSYFGWGEVIAIFNDD--DQGRNGVTALG 203 (953)
Q Consensus 126 ~a~av~~v~~~~~vP~Is~~at~~~ls~~~~p~~fr~~p~d~~~~~ai~~~l~~~~w~~vaii~~d~--~~g~~~~~~l~ 203 (953)
.......+...++|+|......+. +.+..+..++...+..+++++...|-++++++.... .......+.|.
T Consensus 76 -~~~~~~~~~~~~iPvV~~~~~~~~------~~~~~V~~D~~~~g~~a~~~L~~~G~~~i~~i~~~~~~~~~~~R~~gf~ 148 (291)
T 3egc_A 76 -EHDYLRTELPKTFPIVAVNRELRI------PGCGAVLSENVRGARTAVEYLIARGHTRIGAIVGSAGLMTSRERLKGFR 148 (291)
T ss_dssp -CCHHHHHSSCTTSCEEEESSCCCC------TTCEEEEECHHHHHHHHHHHHHHTTCCSEEEECSCTTSHHHHHHHHHHH
T ss_pred -ChHHHHHhhccCCCEEEEecccCC------CCCCEEEECcHHHHHHHHHHHHHcCCCEEEEEeCCCCCcCHHHHHHHHH
Confidence 334455667789999987554331 223445667778888899999889999999998553 34556688999
Q ss_pred HHHHhcCcEEEEEEecCCCCCCChHHHHHHHHHHhc--CCceEEEEEcchhhHHHHHHHHHHcCCCCCceE-EEEeC
Q 002211 204 DKLAEIRCKISYKSALPPDQSVTETDVRNELVKVRM--MEARVIVVHGYSRTGLMVFDVAQRLGMMDSGYV-WIATT 277 (953)
Q Consensus 204 ~~l~~~g~~v~~~~~~~~~~~~~~~d~~~~l~~i~~--~~~~vii~~~~~~~~~~~~~~a~~~g~~~~~~~-wi~~~ 277 (953)
+++++.|+.+......... .+..+....+.++.+ .++++|+ +.+...+..++++++++|+..++-+ .++.|
T Consensus 149 ~~l~~~g~~~~~~~~~~~~--~~~~~~~~~~~~~l~~~~~~~ai~-~~~d~~a~g~~~al~~~g~~vP~di~vvg~d 222 (291)
T 3egc_A 149 AAMSAAGLPVRQEWIAAGG--VRADNGRDGAIKVLTGADRPTALL-TSSHRITEGAMQALNVLGLRYGPDVEIVSFD 222 (291)
T ss_dssp HHHHHTTCCCCGGGEEC--------CCHHHHHHHHTC-CCCSEEE-ESSHHHHHHHHHHHHHHTCCBTTTBEEEEES
T ss_pred HHHHHcCCCCCHHHeEeCC--CChhHHHHHHHHHHhCCCCCcEEE-ECCcHHHHHHHHHHHHcCCCCCCceEEEEec
Confidence 9999998764211111111 011222233444433 4577766 4566678889999999998755433 34433
No 120
>3hcw_A Maltose operon transcriptional repressor; RNA-binding, PSI-2, NYSGXRC, STRU genomics, protein structure initiative; 2.20A {Staphylococcus aureus subsp}
Probab=97.88 E-value=0.00085 Score=71.29 Aligned_cols=208 Identities=10% Similarity=0.030 Sum_probs=130.6
Q ss_pred CceEEEeEEEec------CCCchhHHHHHHHHHHHHHhcCCCCCCCcEEEEEEecCCCChHHHHHHHHHHHhcCcEEEEc
Q 002211 47 PEVLNVGAIFSF------GTVNGQVSRIAMKAAQDDINSDPRVLGGRKLSITMHDAKFNGFLSIMGALQFMETDTLAIVG 120 (953)
Q Consensus 47 ~~~i~IG~l~~~------~~~~g~~~~~a~~lAve~iN~~g~il~g~~l~l~~~D~~~~~~~a~~~a~~li~~~v~aiiG 120 (953)
...-+||+++|. +..+-.....+++-+.++. |+.+. +.++..++.........+.+++|.+||-
T Consensus 5 ~~s~~Igvi~~~~~~~~~~~~f~~~~~~gi~~~a~~~--------g~~~~--~~~~~~~~~~~~~~~~~l~~~~vdGiI~ 74 (295)
T 3hcw_A 5 NQTYKIGLVLKGSEEPIRLNPFYINVLLGISETCNQH--------GYGTQ--TTVSNNMNDLMDEVYKMIKQRMVDAFIL 74 (295)
T ss_dssp CCSCEEEEECSCCCHHHHSCHHHHHHHHHHHHHHHTT--------TCEEE--ECCCCSHHHHHHHHHHHHHTTCCSEEEE
T ss_pred CCCcEEEEEeecCCcccccChHHHHHHHHHHHHHHHC--------CCEEE--EEcCCCChHHHHHHHHHHHhCCcCEEEE
Confidence 345689999953 3334445556666555541 56554 5566666666556666677778888774
Q ss_pred cCChhhHHHHHHhhhhCCCcEEEeecCCCCCCCCCCCcEEEccCChHHHHHHHHHHHHHcCCcEEEEEEecCc--cccch
Q 002211 121 PQSAVMAHVLSHLANELQVPLLSFTALDPTLSPLQYPFFVQTAPNDLYLMSAIAEMVSYFGWGEVIAIFNDDD--QGRNG 198 (953)
Q Consensus 121 p~~S~~a~av~~v~~~~~vP~Is~~at~~~ls~~~~p~~fr~~p~d~~~~~ai~~~l~~~~w~~vaii~~d~~--~g~~~ 198 (953)
-..... ......+...++|+|......+... .. +..+..++..-+..+++++...|-+++++|..... .....
T Consensus 75 ~~~~~~-~~~~~~l~~~~iPvV~i~~~~~~~~-~~---~~~V~~D~~~~~~~a~~~L~~~G~~~I~~i~~~~~~~~~~~R 149 (295)
T 3hcw_A 75 LYSKEN-DPIKQMLIDESMPFIVIGKPTSDID-HQ---FTHIDNDNILASENLTRHVIEQGVDELIFITEKGNFEVSKDR 149 (295)
T ss_dssp SCCCTT-CHHHHHHHHTTCCEEEESCCCSSGG-GG---SCEEEECHHHHHHHHHHHHHHHCCSEEEEEEESSCCHHHHHH
T ss_pred cCcccC-hHHHHHHHhCCCCEEEECCCCcccc-CC---ceEEecCcHHHHHHHHHHHHHcCCccEEEEcCCccchhHHHH
Confidence 222211 2344556778999998754332110 02 23344566777888888888899999999986533 34566
Q ss_pred HHHHHHHHHhcCcEEEEEEecCCCCCCChHHHHHHHHHHhc-----CCceEEEEEcchhhHHHHHHHHHHcCCCCCceEE
Q 002211 199 VTALGDKLAEIRCKISYKSALPPDQSVTETDVRNELVKVRM-----MEARVIVVHGYSRTGLMVFDVAQRLGMMDSGYVW 273 (953)
Q Consensus 199 ~~~l~~~l~~~g~~v~~~~~~~~~~~~~~~d~~~~l~~i~~-----~~~~vii~~~~~~~~~~~~~~a~~~g~~~~~~~w 273 (953)
.+.|.+++++.|+.+... .... +..+....+.++.+ ..+++|+ +.+...+..++++++++|+..++-+-
T Consensus 150 ~~Gf~~al~~~g~~~~~~-~~~~----~~~~~~~~~~~~l~~~~~~~~~~ai~-~~~d~~A~g~~~al~~~g~~vP~di~ 223 (295)
T 3hcw_A 150 IQGFETVASQFNLDYQII-ETSN----EREVILNYMQNLHTRLKDPNIKQAII-SLDAMLHLAILSVLYELNIEIPKDVM 223 (295)
T ss_dssp HHHHHHHHHHTTCEEEEE-EECS----CHHHHHHHHHHHHHHHTCTTSCEEEE-ESSHHHHHHHHHHHHHTTCCTTTTEE
T ss_pred HHHHHHHHHHcCCCeeEE-eccC----CHHHHHHHHHHHHhhcccCCCCcEEE-ECChHHHHHHHHHHHHcCCCCCCceE
Confidence 889999999999886522 1122 24444444444433 2578766 45666788899999999987654443
Q ss_pred EE
Q 002211 274 IA 275 (953)
Q Consensus 274 i~ 275 (953)
|.
T Consensus 224 vi 225 (295)
T 3hcw_A 224 TA 225 (295)
T ss_dssp EE
T ss_pred EE
Confidence 33
No 121
>3gv0_A Transcriptional regulator, LACI family; transcription regulator, PSI-II, structural genomics structure initiative; 2.35A {Agrobacterium tumefaciens str}
Probab=97.87 E-value=0.00037 Score=73.79 Aligned_cols=208 Identities=8% Similarity=-0.025 Sum_probs=128.4
Q ss_pred CceEEEeEEEecCC---CchhHHHHHHHHHHHHHhcCCCCCCCcEEEEEEecCCCChHHHHHHHHHHHhcCcEEEEccCC
Q 002211 47 PEVLNVGAIFSFGT---VNGQVSRIAMKAAQDDINSDPRVLGGRKLSITMHDAKFNGFLSIMGALQFMETDTLAIVGPQS 123 (953)
Q Consensus 47 ~~~i~IG~l~~~~~---~~g~~~~~a~~lAve~iN~~g~il~g~~l~l~~~D~~~~~~~a~~~a~~li~~~v~aiiGp~~ 123 (953)
...-+||+++|... .+-.....+++-+.++ .|+++.+. ++..++.........+.++++.+||-...
T Consensus 6 ~~s~~Igvv~~~~~~~~~~~~~~~~gi~~~a~~--------~g~~~~~~--~~~~~~~~~~~~~~~l~~~~vdgiIi~~~ 75 (288)
T 3gv0_A 6 GKTNVIALVLSVDEELMGFTSQMVFGITEVLST--------TQYHLVVT--PHIHAKDSMVPIRYILETGSADGVIISKI 75 (288)
T ss_dssp -CCCEEEEECBCCCCSSCHHHHHHHHHHHHHTT--------SSCEEEEC--CBSSGGGTTHHHHHHHHHTCCSEEEEESC
T ss_pred CCCCEEEEEecCCccccHHHHHHHHHHHHHHHH--------cCCEEEEe--cCCcchhHHHHHHHHHHcCCccEEEEecC
Confidence 34578999999643 4444555565555443 25666554 44443333223333345567777663221
Q ss_pred hhhHHHHHHhhhhCCCcEEEeecCCCCCCCCCCCcEEEccCChHHHHHHHHHHHHHcCCcEEEEEEecCc--cccchHHH
Q 002211 124 AVMAHVLSHLANELQVPLLSFTALDPTLSPLQYPFFVQTAPNDLYLMSAIAEMVSYFGWGEVIAIFNDDD--QGRNGVTA 201 (953)
Q Consensus 124 S~~a~av~~v~~~~~vP~Is~~at~~~ls~~~~p~~fr~~p~d~~~~~ai~~~l~~~~w~~vaii~~d~~--~g~~~~~~ 201 (953)
.... .....+.+.++|+|......+ +.. +-.+..++...+..+++++...|-++++++..+.. ......+.
T Consensus 76 ~~~~-~~~~~l~~~~iPvV~i~~~~~---~~~---~~~V~~D~~~~g~~a~~~L~~~G~~~I~~i~~~~~~~~~~~R~~g 148 (288)
T 3gv0_A 76 EPND-PRVRFMTERNMPFVTHGRSDM---GIE---HAFHDFDNEAYAYEAVERLAQCGRKRIAVIVPPSRFSFHDHARKG 148 (288)
T ss_dssp CTTC-HHHHHHHHTTCCEEEESCCCS---SCC---CEEEEECHHHHHHHHHHHHHHTTCCEEEEECCCTTSHHHHHHHHH
T ss_pred CCCc-HHHHHHhhCCCCEEEECCcCC---CCC---CcEEEeCcHHHHHHHHHHHHHCCCCeEEEEcCCcccchHHHHHHH
Confidence 1111 334566678999998754332 112 23355677778888999999999999999975433 35567889
Q ss_pred HHHHHHhcCcEEEEEEecCCCCCCChHHHHHHHHHHhcC--CceEEEEEcchhhHHHHHHHHHHcCCCCCceEEE
Q 002211 202 LGDKLAEIRCKISYKSALPPDQSVTETDVRNELVKVRMM--EARVIVVHGYSRTGLMVFDVAQRLGMMDSGYVWI 274 (953)
Q Consensus 202 l~~~l~~~g~~v~~~~~~~~~~~~~~~d~~~~l~~i~~~--~~~vii~~~~~~~~~~~~~~a~~~g~~~~~~~wi 274 (953)
|.+++++.|+.+.....+... .+..+....+.++.+. ++++|+ +.+...+..++++++++|+..++-+-|
T Consensus 149 f~~~l~~~g~~~~~~~~~~~~--~~~~~~~~~~~~~l~~~~~~~ai~-~~~d~~A~g~~~al~~~g~~vP~di~v 220 (288)
T 3gv0_A 149 FNRGIRDFGLTEFPIDAVTIE--TPLEKIRDFGQRLMQSSDRPDGIV-SISGSSTIALVAGFEAAGVKIGEDVDI 220 (288)
T ss_dssp HHHHHHHTTCEECCCCSCCTT--SCHHHHHHHHHHHTTSSSCCSEEE-ESCHHHHHHHHHHHHTTTCCTTTSCEE
T ss_pred HHHHHHHcCCCcchhheeccc--cchHHHHHHHHHHHhCCCCCcEEE-EcCcHHHHHHHHHHHHcCCCCCCceEE
Confidence 999999999876533222222 3345555667777654 467766 455667788999999999875544433
No 122
>3kjx_A Transcriptional regulator, LACI family; LACL family, protein structure initiative II(PSI II), NYSGXRC, structural genomics; 2.33A {Silicibacter pomeroyi}
Probab=97.85 E-value=0.00042 Score=75.53 Aligned_cols=210 Identities=8% Similarity=-0.033 Sum_probs=135.3
Q ss_pred CCceEEEeEEEecC-CCchhHHHHHHHHHHHHHhcCCCCCCCcEEEEEEecCCCChHHHHHHHHHHHhcCcEEEEccCCh
Q 002211 46 KPEVLNVGAIFSFG-TVNGQVSRIAMKAAQDDINSDPRVLGGRKLSITMHDAKFNGFLSIMGALQFMETDTLAIVGPQSA 124 (953)
Q Consensus 46 ~~~~i~IG~l~~~~-~~~g~~~~~a~~lAve~iN~~g~il~g~~l~l~~~D~~~~~~~a~~~a~~li~~~v~aiiGp~~S 124 (953)
....-+||++.|.. ..+-.....+++-+.++ .|+++. +.++..++..-.+....++++++.+||=....
T Consensus 65 ~~~~~~Ig~i~~~~~~~~~~~~~~gi~~~a~~--------~g~~~~--~~~~~~~~~~~~~~i~~l~~~~vdGiIi~~~~ 134 (344)
T 3kjx_A 65 SNRVNLVAVIIPSLSNMVFPEVLTGINQVLED--------TELQPV--VGVTDYLPEKEEKVLYEMLSWRPSGVIIAGLE 134 (344)
T ss_dssp TSCCSEEEEEESCSSSSSHHHHHHHHHHHHTS--------SSSEEE--EEECTTCHHHHHHHHHHHHTTCCSEEEEECSC
T ss_pred cCCCCEEEEEeCCCCcHHHHHHHHHHHHHHHH--------CCCEEE--EEeCCCCHHHHHHHHHHHHhCCCCEEEEECCC
Confidence 34467899999863 44445556666655544 256664 55677777777777778888888777632222
Q ss_pred hhHHHHHHhhhhCCCcEEEeecCCCCCCCCCCCcEEEccCChHHHHHHHHHHHHHcCCcEEEEEEecC---ccccchHHH
Q 002211 125 VMAHVLSHLANELQVPLLSFTALDPTLSPLQYPFFVQTAPNDLYLMSAIAEMVSYFGWGEVIAIFNDD---DQGRNGVTA 201 (953)
Q Consensus 125 ~~a~av~~v~~~~~vP~Is~~at~~~ls~~~~p~~fr~~p~d~~~~~ai~~~l~~~~w~~vaii~~d~---~~g~~~~~~ 201 (953)
... .....+...++|+|......+ .+....+..++..-+..+++++...|-+++++|.... .......+.
T Consensus 135 ~~~-~~~~~l~~~~iPvV~i~~~~~------~~~~~~V~~D~~~~~~~a~~~L~~~G~~~I~~i~~~~~~~~~~~~R~~G 207 (344)
T 3kjx_A 135 HSE-AARAMLDAAGIPVVEIMDSDG------KPVDAMVGISHRRAGREMAQAILKAGYRRIGFMGTKMPLDYRARKRFEG 207 (344)
T ss_dssp CCH-HHHHHHHHCSSCEEEEEECSS------CCSSEEEEECHHHHHHHHHHHHHHHTCCSCCEEESSTTTCHHHHHHHHH
T ss_pred CCH-HHHHHHHhCCCCEEEEeCCCC------CCCCCEEEECcHHHHHHHHHHHHHCCCCeEEEEecCcccCccHHHHHHH
Confidence 112 345566778999998743211 1222345567777788888998888999999998653 334556789
Q ss_pred HHHHHHhcCcEEEEEEecCCCCCCChHHHHHHHHHHhc--CCceEEEEEcchhhHHHHHHHHHHcCCCCCceEEEE
Q 002211 202 LGDKLAEIRCKISYKSALPPDQSVTETDVRNELVKVRM--MEARVIVVHGYSRTGLMVFDVAQRLGMMDSGYVWIA 275 (953)
Q Consensus 202 l~~~l~~~g~~v~~~~~~~~~~~~~~~d~~~~l~~i~~--~~~~vii~~~~~~~~~~~~~~a~~~g~~~~~~~wi~ 275 (953)
|.+++++.|+.+.....+... .+..+-...+.++.+ .++++|+ +.+...+..+++++++.|+..++-+-+.
T Consensus 208 f~~al~~~g~~~~~~~~~~~~--~~~~~~~~~~~~ll~~~~~~~ai~-~~nd~~A~g~~~al~~~g~~vP~disvv 280 (344)
T 3kjx_A 208 FTEVLGKNGVEIEDREFYSGG--SALAKGREMTQAMLERSPDLDFLY-YSNDMIAAGGLLYLLEQGIDIPGQIGLA 280 (344)
T ss_dssp HHHHHHHTTCCCSCEEECSSC--CCHHHHHHHHHHHHHHSTTCCEEE-ESSHHHHHHHHHHHHHTTCCTTTTCEEE
T ss_pred HHHHHHHcCCCCChheEEeCC--CCHHHHHHHHHHHHhcCCCCCEEE-ECCHHHHHHHHHHHHHcCCCCCCceEEE
Confidence 999999999865433333222 223443444444433 3677776 4556678889999999998765544444
No 123
>3gyb_A Transcriptional regulators (LACI-family transcriptional regulatory protein); protein structure initiative II(PSI II), nysgxrc; 1.60A {Corynebacterium glutamicum}
Probab=97.84 E-value=7e-05 Score=79.08 Aligned_cols=205 Identities=9% Similarity=-0.005 Sum_probs=129.6
Q ss_pred ceEEEeEEEecC-CCchhHHHHHHHHHHHHHhcCCCCCCCcEEEEEEecCCCChHHHHHHHHHHHhcCcEEEEccCChhh
Q 002211 48 EVLNVGAIFSFG-TVNGQVSRIAMKAAQDDINSDPRVLGGRKLSITMHDAKFNGFLSIMGALQFMETDTLAIVGPQSAVM 126 (953)
Q Consensus 48 ~~i~IG~l~~~~-~~~g~~~~~a~~lAve~iN~~g~il~g~~l~l~~~D~~~~~~~a~~~a~~li~~~v~aiiGp~~S~~ 126 (953)
..-+||+++|.. ..+-.....+++-+.++. |+++.+. ++. ++....+....++++++.+|| -.....
T Consensus 4 ~~~~Igvi~~~~~~~~~~~~~~gi~~~a~~~--------g~~~~~~--~~~-~~~~~~~~~~~l~~~~vdgiI-~~~~~~ 71 (280)
T 3gyb_A 4 RTQLIAVLIDDYSNPWFIDLIQSLSDVLTPK--------GYRLSVI--DSL-TSQAGTDPITSALSMRPDGII-IAQDIP 71 (280)
T ss_dssp CCCEEEEEESCTTSGGGHHHHHHHHHHHGGG--------TCEEEEE--CSS-SSCSSSCHHHHHHTTCCSEEE-EESCC-
T ss_pred ccCEEEEEeCCCCChHHHHHHHHHHHHHHHC--------CCEEEEE--eCC-CchHHHHHHHHHHhCCCCEEE-ecCCCC
Confidence 356899999863 555566777777766653 5666654 444 444444556667778898888 322222
Q ss_pred HHHHHHhhhhCCCcEEEeecCCCCCCCCCCCcEEEccCChHHHHHHHHHHHHHcCCcEEEEEEecCccccchHHHHHHHH
Q 002211 127 AHVLSHLANELQVPLLSFTALDPTLSPLQYPFFVQTAPNDLYLMSAIAEMVSYFGWGEVIAIFNDDDQGRNGVTALGDKL 206 (953)
Q Consensus 127 a~av~~v~~~~~vP~Is~~at~~~ls~~~~p~~fr~~p~d~~~~~ai~~~l~~~~w~~vaii~~d~~~g~~~~~~l~~~l 206 (953)
...+.. .++|+|......+ .+...++ +..++...+..+++++...|-++++++...........+.|.+++
T Consensus 72 ~~~~~~----~~iPvV~~~~~~~--~~~~~~~---V~~D~~~~g~~a~~~L~~~G~~~i~~i~~~~~~~~~R~~gf~~~l 142 (280)
T 3gyb_A 72 DFTVPD----SLPPFVIAGTRIT--QASTHDS---VANDDFRGAEIATKHLIDLGHTHIAHLRVGSGAGLRRFESFEATM 142 (280)
T ss_dssp -----------CCCEEEESCCCS--SSCSTTE---EEECHHHHHHHHHHHHHHTTCCSEEEECCSSHHHHHHHHHHHHHH
T ss_pred hhhHhh----cCCCEEEECCCCC--CCCCCCE---EEechHHHHHHHHHHHHHCCCCeEEEEeCCCchHHHHHHHHHHHH
Confidence 222222 8999998765442 1222333 455677778889999988999999999876544666788999999
Q ss_pred HhcCcEEEEEEecCCCCCCChHHHHHHHHHHhcC--CceEEEEEcchhhHHHHHHHHHHcCCCCCceE-EEEeC
Q 002211 207 AEIRCKISYKSALPPDQSVTETDVRNELVKVRMM--EARVIVVHGYSRTGLMVFDVAQRLGMMDSGYV-WIATT 277 (953)
Q Consensus 207 ~~~g~~v~~~~~~~~~~~~~~~d~~~~l~~i~~~--~~~vii~~~~~~~~~~~~~~a~~~g~~~~~~~-wi~~~ 277 (953)
++.|..+.... +... .+..+....+.++.+. ++++|+. .+...+..++++++++|+..++-+ .++.|
T Consensus 143 ~~~~~~~~~~~-~~~~--~~~~~~~~~~~~~l~~~~~~~ai~~-~~d~~a~g~~~al~~~g~~vP~di~vvg~d 212 (280)
T 3gyb_A 143 RAHGLEPLSND-YLGP--AVEHAGYTETLALLKEHPEVTAIFS-SNDITAIGALGAARELGLRVPEDLSIIGYD 212 (280)
T ss_dssp HHTTCCCEECC-CCSC--CCHHHHHHHHHHHHHHCTTCCEEEE-SSHHHHHHHHHHHHHHTCCTTTTCEEEEES
T ss_pred HHcCcCCCccc-ccCC--CCHHHHHHHHHHHHhCCCCCCEEEE-CChHHHHHHHHHHHHcCCCCCCeeEEEEEC
Confidence 99998765432 2222 2344445555555443 4677664 456678889999999998754433 44433
No 124
>3k9c_A Transcriptional regulator, LACI family protein; PSI-II, 11026W, structural genomics, PR structure initiative; 2.14A {Rhodococcus jostii}
Probab=97.82 E-value=0.00073 Score=71.54 Aligned_cols=206 Identities=13% Similarity=0.068 Sum_probs=129.8
Q ss_pred CCceEEEeEEEecCCCchhHHHHHHHHHHHHHhcCCCCCCCcEEEEEEecCCCChHHHHHHHHHHHhcCcEEEEccCChh
Q 002211 46 KPEVLNVGAIFSFGTVNGQVSRIAMKAAQDDINSDPRVLGGRKLSITMHDAKFNGFLSIMGALQFMETDTLAIVGPQSAV 125 (953)
Q Consensus 46 ~~~~i~IG~l~~~~~~~g~~~~~a~~lAve~iN~~g~il~g~~l~l~~~D~~~~~~~a~~~a~~li~~~v~aiiGp~~S~ 125 (953)
....-+||++++.+..+-.....+++-+.++. |+++.+...+...+ -.+....+++++|.+||-.....
T Consensus 9 ~~~~~~Igvi~~~~~~~~~~~~~gi~~~a~~~--------g~~~~~~~~~~~~~---~~~~~~~l~~~~vdgiIi~~~~~ 77 (289)
T 3k9c_A 9 QASSRLLGVVFELQQPFHGDLVEQIYAAATRR--------GYDVMLSAVAPSRA---EKVAVQALMRERCEAAILLGTRF 77 (289)
T ss_dssp ----CEEEEEEETTCHHHHHHHHHHHHHHHHT--------TCEEEEEEEBTTBC---HHHHHHHHTTTTEEEEEEETCCC
T ss_pred cCCCCEEEEEEecCCchHHHHHHHHHHHHHHC--------CCEEEEEeCCCCHH---HHHHHHHHHhCCCCEEEEECCCC
Confidence 34567899999555655566677777776663 56776655544333 34455667777888887433222
Q ss_pred hHHHHHHhhhhCCCcEEEeecCCCCCCCCCCCcEEEccCChHHHHHHHHHHHHHcCCcEEEEEEecCc-cccchHHHHHH
Q 002211 126 MAHVLSHLANELQVPLLSFTALDPTLSPLQYPFFVQTAPNDLYLMSAIAEMVSYFGWGEVIAIFNDDD-QGRNGVTALGD 204 (953)
Q Consensus 126 ~a~av~~v~~~~~vP~Is~~at~~~ls~~~~p~~fr~~p~d~~~~~ai~~~l~~~~w~~vaii~~d~~-~g~~~~~~l~~ 204 (953)
.... ...+.. ++|+|......+ + +.+-.+..++..-+..+++++...|-++++++..... ......+.|.+
T Consensus 78 ~~~~-~~~~~~-~iPvV~i~~~~~---~---~~~~~V~~D~~~~~~~a~~~L~~~G~~~I~~i~~~~~~~~~~R~~Gf~~ 149 (289)
T 3k9c_A 78 DTDE-LGALAD-RVPALVVARASG---L---PGVGAVRGDDVAGITLAVDHLTELGHRNIAHIDGADAPGGADRRAGFLA 149 (289)
T ss_dssp CHHH-HHHHHT-TSCEEEESSCCS---S---TTSEEEEECHHHHHHHHHHHHHHTTCCSEEEECCTTSTTHHHHHHHHHH
T ss_pred CHHH-HHHHHc-CCCEEEEcCCCC---C---CCCCEEEeChHHHHHHHHHHHHHCCCCcEEEEeCCCCccHHHHHHHHHH
Confidence 2233 334455 999998754332 1 2233455677777888899988899999999986533 34456789999
Q ss_pred HHHhcCcEEEEEEecCCCCCCChHHHHHHHHHHhc--CCceEEEEEcchhhHHHHHHHHHHcCCCCCceEEE
Q 002211 205 KLAEIRCKISYKSALPPDQSVTETDVRNELVKVRM--MEARVIVVHGYSRTGLMVFDVAQRLGMMDSGYVWI 274 (953)
Q Consensus 205 ~l~~~g~~v~~~~~~~~~~~~~~~d~~~~l~~i~~--~~~~vii~~~~~~~~~~~~~~a~~~g~~~~~~~wi 274 (953)
++++.|..+... .+... .+..+-...+.++.+ .++++|+. .+...+..+++++++.|+..++-+-+
T Consensus 150 al~~~g~~~~~~-~~~~~--~~~~~~~~~~~~~l~~~~~~~ai~~-~~d~~A~g~~~al~~~g~~vP~di~v 217 (289)
T 3k9c_A 150 AMDRHGLSASAT-VVTGG--TTETEGAEGMHTLLEMPTPPTAVVA-FNDRCATGVLDLLVRSGRDVPADISV 217 (289)
T ss_dssp HHHHTTCGGGEE-EECCC--SSHHHHHHHHHHHHTSSSCCSEEEE-SSHHHHHHHHHHHHHTTCCTTTTCEE
T ss_pred HHHHCCCCCCcc-EEECC--CCHHHHHHHHHHHHcCCCCCCEEEE-CChHHHHHHHHHHHHcCCCCCCceEE
Confidence 999998763221 12222 234555556666655 35677654 45567788999999999876544433
No 125
>3uif_A Sulfonate ABC transporter, periplasmic sulfonate- protein SSUA; structural genomics; 2.60A {Methylobacillus flagellatus}
Probab=97.77 E-value=0.00014 Score=79.45 Aligned_cols=108 Identities=19% Similarity=0.047 Sum_probs=64.5
Q ss_pred CCCCChHHhhhCCCeEEEEeCchHHHHHH---HhhCCCccceEe-CCCHHHHHHHHHcCCcEEEEccchhHHHHHhcCcc
Q 002211 700 SPIKGIDTLMTSNDRVGYQVGSFAENYLI---EELSIPKSRLVA-LGSPEEYAIALENRTVAAVVDERPYIDLFLSDHCQ 775 (953)
Q Consensus 700 ~~I~sl~dL~~~~~~ig~~~~s~~~~~l~---~~~~~~~~~~~~-~~~~~~~~~~l~~g~~~a~~~~~~~~~~~~~~~~~ 775 (953)
.+|++++||. |++||+..|+.....+. +..+.....+.. .-+..+...+|.+|++||++...+..........+
T Consensus 109 s~i~s~~DLk--Gk~I~v~~gs~~~~~~~~~l~~~Gl~~~~v~~v~~~~~~~~~al~~G~vDa~~~~~~~~~~~~~g~~~ 186 (348)
T 3uif_A 109 STAKSIKDLK--GKKIALHRGRPWELAFSNLLQSEGLTFKDFKIVNVNPQVGAAALASGTVDGFFSLFDSYILEDRGVGK 186 (348)
T ss_dssp CCCCSGGGGT--TSEEEECTTSTHHHHHHHHHHHTTCCGGGSEEECCCHHHHHHHHHHTSSSEEEESTTHHHHHHTTSEE
T ss_pred CCCCCHHHcC--CCEEEecCCChHHHHHHHHHHHcCCCHHHeEEEECCHHHHHHHHHcCCCCEEEechHHHHHHhcCCcE
Confidence 3699999996 99999988876544332 334544333322 22678899999999999999877766433222222
Q ss_pred eEEeCCcc---ccCccEEEecCC----Cc-chHHHHHHHHhh
Q 002211 776 FSVRGQEF---TKSGWGFAFPRD----SP-LAIDMSTAILTL 809 (953)
Q Consensus 776 l~~~~~~~---~~~~~~~~~~k~----sp-l~~~~n~~i~~l 809 (953)
.......+ .....+++++++ .| ....|.+++.+-
T Consensus 187 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~a~~~a 228 (348)
T 3uif_A 187 IIWSTKTAPVDWKLMGGVWARNDFVKQNPEITQAIVTAYLKS 228 (348)
T ss_dssp EEEEGGGSCGGGSCCEEEEEEHHHHHHCHHHHHHHHHHHHHH
T ss_pred EEEeccccCCCCcceeEEEECHHHHHHCHHHHHHHHHHHHHH
Confidence 22222111 122346677665 45 555565555443
No 126
>2x26_A Periplasmic aliphatic sulphonates-binding protein; transport protein; 1.75A {Escherichia coli}
Probab=97.76 E-value=0.00026 Score=75.91 Aligned_cols=121 Identities=17% Similarity=0.213 Sum_probs=75.2
Q ss_pred CCCChHHhhhCCCeEEEEeCchHHHHHH---HhhCCCccceE-eCCCHHHHHHHHHcCCcEEEEccchhHHHHHhcCcce
Q 002211 701 PIKGIDTLMTSNDRVGYQVGSFAENYLI---EELSIPKSRLV-ALGSPEEYAIALENRTVAAVVDERPYIDLFLSDHCQF 776 (953)
Q Consensus 701 ~I~sl~dL~~~~~~ig~~~~s~~~~~l~---~~~~~~~~~~~-~~~~~~~~~~~l~~g~~~a~~~~~~~~~~~~~~~~~l 776 (953)
+|++++||. |++|++..|+....++. +..+.....+. .+.+..+.+.++.+|++|+++...++..+...+. .+
T Consensus 96 ~i~s~~dL~--Gk~i~~~~gs~~~~~l~~~l~~~Gl~~~~v~~~~~~~~~~~~al~~G~vDa~~~~~~~~~~~~~~~-~~ 172 (308)
T 2x26_A 96 PIKTVADLK--GHKVAFQKGSSSHNLLLRALRQAGLKFTDIQPTYLTPADARAAFQQGNVDAWAIWDPYYSAALLQG-GV 172 (308)
T ss_dssp SCCSGGGGT--TSEEEECTTSHHHHHHHHHHHHTTCCGGGSEEEECCHHHHHHHHHTTSSSEEEEETTHHHHHHHHS-SE
T ss_pred CCCCHHHcC--CCEEeeeCCCcHHHHHHHHHHHcCCCHHHeEEEecChHHHHHHHHcCCCCEEEecchhHHHHHhcC-Cc
Confidence 688999996 89999987876554432 23444433332 3456889999999999999998888877765542 34
Q ss_pred EEeCC--ccccCccEEEec----CCCc-chHHHHHHHHh----hhccc-cHHHHHHHhcc
Q 002211 777 SVRGQ--EFTKSGWGFAFP----RDSP-LAIDMSTAILT----LSENG-ELQRIHDKWLR 824 (953)
Q Consensus 777 ~~~~~--~~~~~~~~~~~~----k~sp-l~~~~n~~i~~----l~e~G-~~~~~~~~w~~ 824 (953)
+++.. .+....-.+++. +..| +...|++++.+ +.+++ ...++..+|+.
T Consensus 173 ~~l~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~al~~a~~~~~~~~~~~~~~~~~~~~ 232 (308)
T 2x26_A 173 RVLKDGTDLNQTGSFYLAARPYAEKNGAFIQGVLATFSEADALTRSQREQSIALLAKTMG 232 (308)
T ss_dssp EEEEESTTSCCCCEEEEEEHHHHHHTHHHHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHT
T ss_pred EEEecCCCcCCcceEEEEcHHHHHHCHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHhC
Confidence 44422 221222223333 3345 77888887776 33443 34555666654
No 127
>3jy6_A Transcriptional regulator, LACI family; NYSGXRC, PSI-II, protein S initiative, structural genomics; 1.97A {Lactobacillus brevis}
Probab=97.75 E-value=0.0012 Score=69.19 Aligned_cols=206 Identities=9% Similarity=-0.026 Sum_probs=131.7
Q ss_pred CceEEEeEEEecC-CCchhHHHHHHHHHHHHHhcCCCCCCCcEEEEEEecCCCChHHHHHHHHHHHhcCcEEEEccCChh
Q 002211 47 PEVLNVGAIFSFG-TVNGQVSRIAMKAAQDDINSDPRVLGGRKLSITMHDAKFNGFLSIMGALQFMETDTLAIVGPQSAV 125 (953)
Q Consensus 47 ~~~i~IG~l~~~~-~~~g~~~~~a~~lAve~iN~~g~il~g~~l~l~~~D~~~~~~~a~~~a~~li~~~v~aiiGp~~S~ 125 (953)
...-+||+++|-. ..+-.....+++-+.++. |+++. +.++..++..-.+....++++++.+||-.....
T Consensus 5 ~~s~~Igvi~~~~~~~~~~~~~~gi~~~~~~~--------g~~~~--~~~~~~~~~~~~~~~~~l~~~~vdgiIi~~~~~ 74 (276)
T 3jy6_A 5 QSSKLIAVIVANIDDYFSTELFKGISSILESR--------GYIGV--LFDANADIEREKTLLRAIGSRGFDGLILQSFSN 74 (276)
T ss_dssp CCCCEEEEEESCTTSHHHHHHHHHHHHHHHTT--------TCEEE--EEECTTCHHHHHHHHHHHHTTTCSEEEEESSCC
T ss_pred CCCcEEEEEeCCCCchHHHHHHHHHHHHHHHC--------CCEEE--EEeCCCCHHHHHHHHHHHHhCCCCEEEEecCCc
Confidence 4457899999864 334445566666555542 55555 456667777767777778888888877433333
Q ss_pred hHHHHHHhhhhCCCcEEEeecCCCCCCCCCCCcEEEccCChHHHHHHHHHHHHHcCCcEEEEEEecCc-c--ccchHHHH
Q 002211 126 MAHVLSHLANELQVPLLSFTALDPTLSPLQYPFFVQTAPNDLYLMSAIAEMVSYFGWGEVIAIFNDDD-Q--GRNGVTAL 202 (953)
Q Consensus 126 ~a~av~~v~~~~~vP~Is~~at~~~ls~~~~p~~fr~~p~d~~~~~ai~~~l~~~~w~~vaii~~d~~-~--g~~~~~~l 202 (953)
......+.+.++|+|......+ +...+ .+..++...+..+++++...|-++++++..... + .....+.|
T Consensus 75 --~~~~~~l~~~~iPvV~i~~~~~---~~~~~---~V~~D~~~~g~~a~~~L~~~G~~~I~~i~~~~~~~~~~~~R~~gf 146 (276)
T 3jy6_A 75 --PQTVQEILHQQMPVVSVDREMD---ACPWP---QVVTDNFEAAKAATTAFRQQGYQHVVVLTSELELSRTRQERYRGI 146 (276)
T ss_dssp --HHHHHHHHTTSSCEEEESCCCT---TCSSC---EEECCHHHHHHHHHHHHHTTTCCEEEEEEECSTTCHHHHHHHHHH
T ss_pred --HHHHHHHHHCCCCEEEEecccC---CCCCC---EEEEChHHHHHHHHHHHHHcCCCeEEEEecCCCCCchHHHHHHHH
Confidence 4555667778999998754332 22223 345677778888999999999999999987543 2 34567888
Q ss_pred HHHHHhcCcEEEEEEecCCCCCCChHHHHHHHHHHhc-CCceEEEEEcchhhHHHHHHHHHHcCCCCCceEEEEe
Q 002211 203 GDKLAEIRCKISYKSALPPDQSVTETDVRNELVKVRM-MEARVIVVHGYSRTGLMVFDVAQRLGMMDSGYVWIAT 276 (953)
Q Consensus 203 ~~~l~~~g~~v~~~~~~~~~~~~~~~d~~~~l~~i~~-~~~~vii~~~~~~~~~~~~~~a~~~g~~~~~~~wi~~ 276 (953)
.+++++.+. +... -... .....+....+.++. .++++|+. .+...+..++++++++|+..++-+-|.+
T Consensus 147 ~~~l~~~~~-~~~~--~~~~--~~~~~~~~~~~~l~~~~~~~ai~~-~~d~~a~g~~~al~~~g~~vP~di~vig 215 (276)
T 3jy6_A 147 LAAAQDVDV-LEVS--ESSY--NHSEVHQRLTQLITQNDQKTVAFA-LKERWLLEFFPNLIISGLIDNQTVTATG 215 (276)
T ss_dssp HTTCSEEEE-EEEC--SSSC--CHHHHHHHHHHHHHSSSSCEEEEE-SSHHHHHHHSHHHHHSSSCCSSSEEEEE
T ss_pred HHHHHhCCc-EEEe--cccc--CCcHHHHHHHHHHhcCCCCcEEEE-eCcHHHHHHHHHHHHcCCCCCCcEEEEE
Confidence 888887754 2211 1100 112334444444443 45677664 5667788899999999987665454443
No 128
>2dri_A D-ribose-binding protein; sugar transport; HET: RIP; 1.60A {Escherichia coli} SCOP: c.93.1.1 PDB: 1urp_A* 1ba2_A 1dbp_A* 1drj_A* 1drk_A* 2gx6_A*
Probab=97.75 E-value=0.0032 Score=65.75 Aligned_cols=205 Identities=11% Similarity=0.091 Sum_probs=125.2
Q ss_pred EEeEEEecC-CCchhHHHHHHHHHHHHHhcCCCCCCCcEEEEEEecCCCChHHHHHHHHHHHhcCcEEEEc-cCChhhHH
Q 002211 51 NVGAIFSFG-TVNGQVSRIAMKAAQDDINSDPRVLGGRKLSITMHDAKFNGFLSIMGALQFMETDTLAIVG-PQSAVMAH 128 (953)
Q Consensus 51 ~IG~l~~~~-~~~g~~~~~a~~lAve~iN~~g~il~g~~l~l~~~D~~~~~~~a~~~a~~li~~~v~aiiG-p~~S~~a~ 128 (953)
+||++.|-. ..+-.....+++-+.++. |+++.+ .++..++..-......+++++|.+||= |..+....
T Consensus 3 ~Igvi~~~~~~~f~~~~~~gi~~~~~~~--------g~~~~~--~~~~~~~~~~~~~i~~l~~~~vdgiIi~~~~~~~~~ 72 (271)
T 2dri_A 3 TIALVVSTLNNPFFVSLKDGAQKEADKL--------GYNLVV--LDSQNNPAKELANVQDLTVRGTKILLINPTDSDAVG 72 (271)
T ss_dssp EEEEEESCSSSHHHHHHHHHHHHHHHHH--------TCEEEE--EECTTCHHHHHHHHHHHTTTTEEEEEECCSSTTTTH
T ss_pred EEEEEecCCCCHHHHHHHHHHHHHHHHc--------CcEEEE--eCCCCCHHHHHHHHHHHHHcCCCEEEEeCCChHHHH
Confidence 589988753 444445667777666663 455544 566667766666667777788988773 33333222
Q ss_pred HHHHhhhhCCCcEEEeecCCCCCCCCCCCcEEEccCChHHHHHHHHHHHHHc--CCcEEEEEEecC--ccccchHHHHHH
Q 002211 129 VLSHLANELQVPLLSFTALDPTLSPLQYPFFVQTAPNDLYLMSAIAEMVSYF--GWGEVIAIFNDD--DQGRNGVTALGD 204 (953)
Q Consensus 129 av~~v~~~~~vP~Is~~at~~~ls~~~~p~~fr~~p~d~~~~~ai~~~l~~~--~w~~vaii~~d~--~~g~~~~~~l~~ 204 (953)
.....+...++|+|......+ .. +..-.+..++..-+..+++++... |-+++++|.... .......+.|.+
T Consensus 73 ~~~~~~~~~~iPvV~i~~~~~---~~--~~~~~V~~D~~~~g~~a~~~L~~~g~g~~~I~~i~g~~~~~~~~~R~~Gf~~ 147 (271)
T 2dri_A 73 NAVKMANQANIPVITLDRQAT---KG--EVVSHIASDNVLGGKIAGDYIAKKAGEGAKVIELQGIAGTSAARERGEGFQQ 147 (271)
T ss_dssp HHHHHHHHTTCCEEEESSCCS---SS--CCSEEEEECHHHHHHHHHHHHHHHHCTTCEEEEEECCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHCCCcEEEecCCCC---CC--ceeEEEecChHHHHHHHHHHHHHHcCCCCeEEEEECCCCCccHhHHHHHHHH
Confidence 334455667999998754322 11 111234456666677788887666 568999998542 233456788999
Q ss_pred HHHhcCcEEEEEEecCCCCCCChHHHHHHHHHHhc--CCceEEEEEcchhhHHHHHHHHHHcCCCCCceEEEEeC
Q 002211 205 KLAEIRCKISYKSALPPDQSVTETDVRNELVKVRM--MEARVIVVHGYSRTGLMVFDVAQRLGMMDSGYVWIATT 277 (953)
Q Consensus 205 ~l~~~g~~v~~~~~~~~~~~~~~~d~~~~l~~i~~--~~~~vii~~~~~~~~~~~~~~a~~~g~~~~~~~wi~~~ 277 (953)
++++.|+++..... .. .+...-...+.++.+ ..+++|+ +.+...+..+++++++.|+ .+...++-|
T Consensus 148 al~~~g~~~~~~~~--~~--~~~~~~~~~~~~ll~~~~~~~ai~-~~nD~~A~g~~~al~~~g~--~dv~vvGfD 215 (271)
T 2dri_A 148 AVAAHKFNVLASQP--AD--FDRIKGLNVMQNLLTAHPDVQAVF-AQNDEMALGALRALQTAGK--SDVMVVGFD 215 (271)
T ss_dssp HHHHHTCEEEEEEE--CT--TCHHHHHHHHHHHHHHCTTCCEEE-ESSHHHHHHHHHHHHHHTC--CSCEEEEEE
T ss_pred HHhcCCCEEEEecC--CC--CCHHHHHHHHHHHHHhCCCccEEE-ECCCcHHHHHHHHHHHcCC--CCcEEEEec
Confidence 99999987654321 11 123333344455433 3466654 4455678889999999997 344444433
No 129
>3tb6_A Arabinose metabolism transcriptional repressor; transcription regulation, arabinose binding, DNA binding Pro; HET: ARB; 2.21A {Bacillus subtilis}
Probab=97.74 E-value=0.00047 Score=73.31 Aligned_cols=210 Identities=12% Similarity=0.071 Sum_probs=133.8
Q ss_pred eEEEeEEEecC-CCchhHHHHHHHHHHHHHhcCCCCCCCcEEEEEEecCCCChHHHHHHHHHHHhcCcEEEEc-cCChh-
Q 002211 49 VLNVGAIFSFG-TVNGQVSRIAMKAAQDDINSDPRVLGGRKLSITMHDAKFNGFLSIMGALQFMETDTLAIVG-PQSAV- 125 (953)
Q Consensus 49 ~i~IG~l~~~~-~~~g~~~~~a~~lAve~iN~~g~il~g~~l~l~~~D~~~~~~~a~~~a~~li~~~v~aiiG-p~~S~- 125 (953)
.-+||++.|.. ..+-.....+++-+.++. |+++. +.++..++..-.+....++++++.+||- |..+.
T Consensus 15 ~~~Igvi~~~~~~~~~~~~~~gi~~~a~~~--------g~~~~--~~~~~~~~~~~~~~~~~l~~~~vdgiIi~~~~~~~ 84 (298)
T 3tb6_A 15 NKTIGVLTTYISDYIFPSIIRGIESYLSEQ--------GYSML--LTSTNNNPDNERRGLENLLSQHIDGLIVEPTKSAL 84 (298)
T ss_dssp CCEEEEEESCSSSTTHHHHHHHHHHHHHHT--------TCEEE--EEECTTCHHHHHHHHHHHHHTCCSEEEECCSSTTS
T ss_pred CceEEEEeCCCCchHHHHHHHHHHHHHHHC--------CCEEE--EEeCCCChHHHHHHHHHHHHCCCCEEEEecccccc
Confidence 36899999974 445566777887777662 56555 4566678888778888888888888774 33221
Q ss_pred --hHHHHHHhhhhCCCcEEEeecCCCCCCCCCCCcEEEccCChHHHHHHHHHHHHHcCCcEEEEEEecC-ccccchHHHH
Q 002211 126 --MAHVLSHLANELQVPLLSFTALDPTLSPLQYPFFVQTAPNDLYLMSAIAEMVSYFGWGEVIAIFNDD-DQGRNGVTAL 202 (953)
Q Consensus 126 --~a~av~~v~~~~~vP~Is~~at~~~ls~~~~p~~fr~~p~d~~~~~ai~~~l~~~~w~~vaii~~d~-~~g~~~~~~l 202 (953)
........+...++|+|......+.. ..+ .+..++...+..+++++...|-++++++.... .......+.|
T Consensus 85 ~~~~~~~~~~~~~~~iPvV~~~~~~~~~---~~~---~V~~d~~~~~~~a~~~L~~~G~~~i~~i~~~~~~~~~~R~~gf 158 (298)
T 3tb6_A 85 QTPNIGYYLNLEKNGIPFAMINASYAEL---AAP---SFTLDDVKGGMMAAEHLLSLGHTHMMGIFKADDTQGVKRMNGF 158 (298)
T ss_dssp CCTTHHHHHHHHHTTCCEEEESSCCTTC---SSC---EEEECHHHHHHHHHHHHHHTTCCSEEEEEESSSHHHHHHHHHH
T ss_pred cCCcHHHHHHHHhcCCCEEEEecCcCCC---CCC---EEEeCcHHHHHHHHHHHHHCCCCcEEEEcCCCCccHHHHHHHH
Confidence 33345566777899999876543221 223 34556777788899999889999999998543 3345567889
Q ss_pred HHHHHhcCcEEEEEEecCCCCCCChHHHHHHHHHHhcC--C--ceEEEEEcchhhHHHHHHHHHHcCCCCCceEEEE
Q 002211 203 GDKLAEIRCKISYKSALPPDQSVTETDVRNELVKVRMM--E--ARVIVVHGYSRTGLMVFDVAQRLGMMDSGYVWIA 275 (953)
Q Consensus 203 ~~~l~~~g~~v~~~~~~~~~~~~~~~d~~~~l~~i~~~--~--~~vii~~~~~~~~~~~~~~a~~~g~~~~~~~wi~ 275 (953)
.+++++.|+.+.....+..............+.++.+. + +++|+. .+...+..+++++++.|+..++-+-+.
T Consensus 159 ~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ai~~-~~d~~a~g~~~al~~~g~~vP~di~vv 234 (298)
T 3tb6_A 159 IQAHRERELFPSPDMIVTFTTEEKESKLLEKVKATLEKNSKHMPTAILC-YNDEIALKVIDMLREMDLKVPEDMSIV 234 (298)
T ss_dssp HHHHHHTTCCCCGGGEEEECHHHHTTHHHHHHHHHHHHTTTSCCSEEEC-SSHHHHHHHHHHHHHTTCCTTTTCEEE
T ss_pred HHHHHHcCCCCCcceEEEecccchhhhHHHHHHHHHhcCCCCCCeEEEE-eCcHHHHHHHHHHHHcCCCCCCceEEE
Confidence 99999998764211111111000001112334444332 3 677664 455667889999999998765444444
No 130
>3ksx_A Nitrate transport protein; SSUA, alkanesulfonate-binding protein, periplasmic-binding P transport protein; HET: MPO; 1.70A {Xanthomonas axonopodis PV} PDB: 3e4r_A* 3ksj_A*
Probab=97.74 E-value=0.00024 Score=76.82 Aligned_cols=93 Identities=23% Similarity=0.294 Sum_probs=60.1
Q ss_pred CCCCChHHhhhCCCeEEEEeCchHHHHHH---HhhCCCcc--ceEeCCCHHHHHHHHHcCCcEEEEccchhHHHHHhcC-
Q 002211 700 SPIKGIDTLMTSNDRVGYQVGSFAENYLI---EELSIPKS--RLVALGSPEEYAIALENRTVAAVVDERPYIDLFLSDH- 773 (953)
Q Consensus 700 ~~I~sl~dL~~~~~~ig~~~~s~~~~~l~---~~~~~~~~--~~~~~~~~~~~~~~l~~g~~~a~~~~~~~~~~~~~~~- 773 (953)
.+|++++||. |++|++..|+.....+. +..+.... +++.+ +..+...+|.+|++|+++...++......+.
T Consensus 121 s~I~s~~DLk--Gk~i~v~~gs~~~~~~~~~l~~~Gl~~~~v~~v~~-~~~~~~~al~~G~vDa~~~~~p~~~~~~~~~~ 197 (324)
T 3ksx_A 121 SALRTVADLK--GKRIAFQKGSSAHNLLLRVLAKSGLSMRDITPLYL-SPANARAAFAAGQVDAWAIWDPWYSALTLDGS 197 (324)
T ss_dssp CSCCSGGGGT--TCEEEECTTSHHHHHHHHHHHHTTCCGGGSEEEEC-CHHHHHHHHHTTCCSEEEEETTHHHHHHHTTS
T ss_pred CCCCCHHHhC--CCEEEecCCChHHHHHHHHHHHcCCCHHHeEEEeC-CHHHHHHHHHcCCCCEEEEccHHHHHHHhcCC
Confidence 4799999996 99999998875544332 23454433 33444 7889999999999999998888877665543
Q ss_pred cceEEeCCccccCccEEEecCC
Q 002211 774 CQFSVRGQEFTKSGWGFAFPRD 795 (953)
Q Consensus 774 ~~l~~~~~~~~~~~~~~~~~k~ 795 (953)
.+.......+......++++++
T Consensus 198 ~~~l~~~~~~~~~~~~~~~~~~ 219 (324)
T 3ksx_A 198 ARLLANGEGLGLTGGFFLSSRR 219 (324)
T ss_dssp EEEEEESTTSCCCCEEEEEEHH
T ss_pred cEEEecccccCCCccEEEECHH
Confidence 2333333333333344555544
No 131
>3qk7_A Transcriptional regulators; structural genomics, NEW YORK structural genomix research CO NYSGXRC, PSI-2, protein structur initiative; 2.70A {Yersinia pestis}
Probab=97.74 E-value=0.00039 Score=73.92 Aligned_cols=208 Identities=9% Similarity=-0.023 Sum_probs=129.2
Q ss_pred ceEEEeEEEec-----CCCchhHHHHHHHHHHHHHhcCCCCCCCcEEEEEEecCCCChHHHHHHHHHHHhcCcEEEEc-c
Q 002211 48 EVLNVGAIFSF-----GTVNGQVSRIAMKAAQDDINSDPRVLGGRKLSITMHDAKFNGFLSIMGALQFMETDTLAIVG-P 121 (953)
Q Consensus 48 ~~i~IG~l~~~-----~~~~g~~~~~a~~lAve~iN~~g~il~g~~l~l~~~D~~~~~~~a~~~a~~li~~~v~aiiG-p 121 (953)
..-+||+++|. +..+-.....+++-+.++. |+.+.+...++... .......+..++|.+||- |
T Consensus 5 ~s~~Igvi~~~~~~~~~~~~~~~~~~gi~~~a~~~--------g~~~~~~~~~~~~~---~~~~~~~l~~~~vdGiIi~~ 73 (294)
T 3qk7_A 5 RTDAIALAYPSRPRVLNNSTFLEMISWIGIELGKR--------GLDLLLIPDEPGEK---YQSLIHLVETRRVDALIVAH 73 (294)
T ss_dssp CCCEEEEEEESCSGGGSCHHHHHHHHHHHHHHHHT--------TCEEEEEEECTTCC---CHHHHHHHHHTCCSEEEECS
T ss_pred ccceEEEEecCCCccccChhHHHHHHHHHHHHHHC--------CCEEEEEeCCChhh---HHHHHHHHHcCCCCEEEEeC
Confidence 45689999983 3444455667777666652 67777766554222 222334455568888774 2
Q ss_pred CChhhHHHHHHhhhhCCCcEEEeecCCCCCCCCCCCcEEEccCChHHHHHHHHHHHHHcCCcEEEEEEecCc--cccchH
Q 002211 122 QSAVMAHVLSHLANELQVPLLSFTALDPTLSPLQYPFFVQTAPNDLYLMSAIAEMVSYFGWGEVIAIFNDDD--QGRNGV 199 (953)
Q Consensus 122 ~~S~~a~av~~v~~~~~vP~Is~~at~~~ls~~~~p~~fr~~p~d~~~~~ai~~~l~~~~w~~vaii~~d~~--~g~~~~ 199 (953)
..... .....+...++|+|......+ ... +-.+..++...+..+++++...|-++++++..... ......
T Consensus 74 ~~~~~--~~~~~l~~~~iPvV~~~~~~~---~~~---~~~V~~D~~~~~~~a~~~L~~~G~~~I~~i~~~~~~~~~~~R~ 145 (294)
T 3qk7_A 74 TQPED--FRLQYLQKQNFPFLALGRSHL---PKP---YAWFDFDNHAGASLAVKRLLELGHQRIAFVSTDARISYVDQRL 145 (294)
T ss_dssp CCSSC--HHHHHHHHTTCCEEEESCCCC---SSC---CEEEEECHHHHHHHHHHHHHHTTCCCEEEEEESSCCHHHHHHH
T ss_pred CCCCh--HHHHHHHhCCCCEEEECCCCC---CCC---CCEEEcChHHHHHHHHHHHHHCCCceEEEEeCCcccchHHHHH
Confidence 22222 344566778999998754321 122 23456677777888899998899999999986533 344568
Q ss_pred HHHHHHHHhcCcEEEEEEecCCCCCCChHHHHHHHHHHhcC--CceEEEEEcchhhHHHHHHHHHHcCCCCCceE-EEEe
Q 002211 200 TALGDKLAEIRCKISYKSALPPDQSVTETDVRNELVKVRMM--EARVIVVHGYSRTGLMVFDVAQRLGMMDSGYV-WIAT 276 (953)
Q Consensus 200 ~~l~~~l~~~g~~v~~~~~~~~~~~~~~~d~~~~l~~i~~~--~~~vii~~~~~~~~~~~~~~a~~~g~~~~~~~-wi~~ 276 (953)
+.|.+++++.|+.+.....+... .+..+-...+.++.+. ++++|+. .+...+..++++++++|+..++-+ .++-
T Consensus 146 ~Gf~~al~~~g~~~~~~~~~~~~--~~~~~~~~~~~~~l~~~~~~~ai~~-~nd~~A~g~~~al~~~G~~vP~di~vig~ 222 (294)
T 3qk7_A 146 QGYVQTMSEAGLMPLAGYLQKAD--PTRPGGYLAASRLLALEVPPTAIIT-DCNMLGDGVASALDKAGLLGGEGISLIAY 222 (294)
T ss_dssp HHHHHHHHTTTCCCCTTCEEEEC--SSHHHHHHHHHHHHHSSSCCSEEEE-SSHHHHHHHHHHHHHTTCSSTTSCEEEEE
T ss_pred HHHHHHHHHCCCCCChhHeecCC--CCHHHHHHHHHHHHcCCCCCcEEEE-CCHHHHHHHHHHHHHcCCCCCCceEEEee
Confidence 89999999998763211011111 1244444555555543 5677664 556677889999999998765444 4444
Q ss_pred C
Q 002211 277 T 277 (953)
Q Consensus 277 ~ 277 (953)
|
T Consensus 223 D 223 (294)
T 3qk7_A 223 D 223 (294)
T ss_dssp T
T ss_pred c
Confidence 4
No 132
>3kke_A LACI family transcriptional regulator; structural genomics, DNA-binding, transcription regulation, PSI-2; 2.20A {Mycobacterium smegmatis str}
Probab=97.73 E-value=0.00063 Score=72.63 Aligned_cols=205 Identities=11% Similarity=0.014 Sum_probs=130.1
Q ss_pred CCceEEEeEEEecC-CCchhHHHHHHHHHHHHHhcCCCCCCCcEEEEEEecCCCChHHHHHHHHHHHhcCcEEEEccCCh
Q 002211 46 KPEVLNVGAIFSFG-TVNGQVSRIAMKAAQDDINSDPRVLGGRKLSITMHDAKFNGFLSIMGALQFMETDTLAIVGPQSA 124 (953)
Q Consensus 46 ~~~~i~IG~l~~~~-~~~g~~~~~a~~lAve~iN~~g~il~g~~l~l~~~D~~~~~~~a~~~a~~li~~~v~aiiGp~~S 124 (953)
....-+||++.|.. ..+-.....+++-+.++. |+++. +.++..++..-.+....+++++|.+||-....
T Consensus 12 ~~~s~~Igvi~~~~~~~~~~~~~~gi~~~a~~~--------g~~~~--~~~~~~~~~~~~~~~~~l~~~~vdgiI~~~~~ 81 (303)
T 3kke_A 12 HSRSGTIGLIVPDVNNAVFADMFSGVQMAASGH--------STDVL--LGQIDAPPRGTQQLSRLVSEGRVDGVLLQRRE 81 (303)
T ss_dssp -----CEEEEESCTTSTTHHHHHHHHHHHHHHT--------TCCEE--EEECCSTTHHHHHHHHHHHSCSSSEEEECCCT
T ss_pred hCCCCEEEEEeCCCcChHHHHHHHHHHHHHHHC--------CCEEE--EEeCCCChHHHHHHHHHHHhCCCcEEEEecCC
Confidence 34567899999864 455566778887777763 45555 45666677766667777778888887743322
Q ss_pred hhHH-HHHHhhhhCCCcEEEeecCCCCCCCCCCCcEEEccCChHHHHHHHHHHHHHcCCcEEEEEEecC--ccccchHHH
Q 002211 125 VMAH-VLSHLANELQVPLLSFTALDPTLSPLQYPFFVQTAPNDLYLMSAIAEMVSYFGWGEVIAIFNDD--DQGRNGVTA 201 (953)
Q Consensus 125 ~~a~-av~~v~~~~~vP~Is~~at~~~ls~~~~p~~fr~~p~d~~~~~ai~~~l~~~~w~~vaii~~d~--~~g~~~~~~ 201 (953)
.... .+.. +.+ ++|+|......+. ..+ .+..++...+..+++++...|-++++++.... .......+.
T Consensus 82 ~~~~~~~~~-l~~-~iPvV~i~~~~~~----~~~---~V~~D~~~~g~~a~~~L~~~G~~~I~~i~~~~~~~~~~~R~~G 152 (303)
T 3kke_A 82 DFDDDMLAA-VLE-GVPAVTINSRVPG----RVG---SVILDDQKGGGIATEHLITLGHSRIAFISGTAIHDTAQRRKEG 152 (303)
T ss_dssp TCCHHHHHH-HHT-TSCEEEESCCCTT----CCC---EEEECHHHHHHHHHHHHHHTTCCSEEEEESCSSCHHHHHHHHH
T ss_pred CCcHHHHHH-HhC-CCCEEEECCcCCC----CCC---EEEECcHHHHHHHHHHHHHCCCCeEEEEeCCCcCccHHHHHHH
Confidence 2222 3333 444 9999987654432 223 34556777788888898889999999998543 345566889
Q ss_pred HHHHHHhcCcEEEEEEecCCCCCCChHHHHHHHHHH-----hcC--CceEEEEEcchhhHHHHHHHHHHcCCCCCceE
Q 002211 202 LGDKLAEIRCKISYKSALPPDQSVTETDVRNELVKV-----RMM--EARVIVVHGYSRTGLMVFDVAQRLGMMDSGYV 272 (953)
Q Consensus 202 l~~~l~~~g~~v~~~~~~~~~~~~~~~d~~~~l~~i-----~~~--~~~vii~~~~~~~~~~~~~~a~~~g~~~~~~~ 272 (953)
|.+++++.|+.+......... .+.++-...+.++ .+. ++++|+. .+...+..+++++++.|+..++-+
T Consensus 153 f~~al~~~g~~~~~~~~~~~~--~~~~~~~~~~~~l~~~~~l~~~~~~~ai~~-~nd~~A~g~~~al~~~G~~vP~di 227 (303)
T 3kke_A 153 YLETLASAGLRSEAAWVVDAG--WEADAGSAALNTLYRGANLGKPDGPTAVVV-ASVNAAVGALSTALRLGLRVPEDL 227 (303)
T ss_dssp HHHHHHHTTCCCCGGGEEECC--SSHHHHHHHHHHHHHHHCTTSTTSCSEEEE-SSHHHHHHHHHHHHHTTCCTTTTC
T ss_pred HHHHHHHcCCCCCcceEEecC--CChHHHHHHHHHhcchhhhcCCCCCcEEEE-CCHHHHHHHHHHHHHcCCCCCCce
Confidence 999999998764311111111 1244445556666 443 4677654 455667889999999998755433
No 133
>3bil_A Probable LACI-family transcriptional regulator; structural genomics, unknown function, PSI-2, protein structure initiative; 2.50A {Corynebacterium glutamicum atcc 13032}
Probab=97.72 E-value=0.00094 Score=72.88 Aligned_cols=204 Identities=10% Similarity=0.002 Sum_probs=125.5
Q ss_pred CceEEEeEEEecC-CCchhHHHHHHHHHHHHHhcCCCCCCCcEEEEEEecCCCChHHHHHHHHHHHhcCcEEEEccCChh
Q 002211 47 PEVLNVGAIFSFG-TVNGQVSRIAMKAAQDDINSDPRVLGGRKLSITMHDAKFNGFLSIMGALQFMETDTLAIVGPQSAV 125 (953)
Q Consensus 47 ~~~i~IG~l~~~~-~~~g~~~~~a~~lAve~iN~~g~il~g~~l~l~~~D~~~~~~~a~~~a~~li~~~v~aiiGp~~S~ 125 (953)
...-+||++.|.. ..+......+++-+.++. |+++.+ .++..++.........++.+++.+||-.....
T Consensus 64 ~~s~~Igvi~~~~~~~~~~~~~~gi~~~a~~~--------g~~~~~--~~~~~~~~~~~~~~~~l~~~~vdgiI~~~~~~ 133 (348)
T 3bil_A 64 SRSNTIGVIVPSLINHYFAAMVTEIQSTASKA--------GLATII--TNSNEDATTMSGSLEFLTSHGVDGIICVPNEE 133 (348)
T ss_dssp ----CEEEEESCSSSHHHHHHHHHHHHHHHHT--------TCCEEE--EECTTCHHHHHHHHHHHHHTTCSCEEECCCGG
T ss_pred CCCCEEEEEeCCCCCcHHHHHHHHHHHHHHHc--------CCEEEE--EeCCCCHHHHHHHHHHHHhCCCCEEEEeCCCC
Confidence 3456899999853 444455667777666652 555554 45666777666677778888888877533332
Q ss_pred hHHHHHHhhhhCCCcEEEeecCCCCCCCCCCCcEEEccCChHHHHHHHHHHHHHcCCcEEEEEEecC--ccccchHHHHH
Q 002211 126 MAHVLSHLANELQVPLLSFTALDPTLSPLQYPFFVQTAPNDLYLMSAIAEMVSYFGWGEVIAIFNDD--DQGRNGVTALG 203 (953)
Q Consensus 126 ~a~av~~v~~~~~vP~Is~~at~~~ls~~~~p~~fr~~p~d~~~~~ai~~~l~~~~w~~vaii~~d~--~~g~~~~~~l~ 203 (953)
.. .....+...++|+|......+. ....+ .+..++..-+..+++++...|.+++++|..+. .......+.|.
T Consensus 134 ~~-~~~~~l~~~~iPvV~i~~~~~~--~~~~~---~V~~D~~~~~~~a~~~L~~~G~~~I~~i~~~~~~~~~~~R~~Gf~ 207 (348)
T 3bil_A 134 CA-NQLEDLQKQGMPVVLVDRELPG--DSTIP---TATSNPQPGIAAAVELLAHNNALPIGYLSGPMDTSTGRERLEDFK 207 (348)
T ss_dssp GH-HHHHHHHHC-CCEEEESSCCSC--C-CCC---EEEEECHHHHHHHHHHHHHTTCCSEEEECCCTTSHHHHHHHHHHH
T ss_pred Ch-HHHHHHHhCCCCEEEEcccCCC--CCCCC---EEEeChHHHHHHHHHHHHHCCCCeEEEEeCCCCCccHHHHHHHHH
Confidence 22 3344556689999987543321 01222 34455666678888888888999999998543 23456678899
Q ss_pred HHHHhcCcEEEEEEecCCCCCCChHHHHHHHHHHhcCC-ceEEEEEcchhhHHHHHHHHHHcCCCCCceE
Q 002211 204 DKLAEIRCKISYKSALPPDQSVTETDVRNELVKVRMME-ARVIVVHGYSRTGLMVFDVAQRLGMMDSGYV 272 (953)
Q Consensus 204 ~~l~~~g~~v~~~~~~~~~~~~~~~d~~~~l~~i~~~~-~~vii~~~~~~~~~~~~~~a~~~g~~~~~~~ 272 (953)
+++++.|+..... +... .+..+-...+.++.+.. + .|++.+...+..+++++++.|+..++-+
T Consensus 208 ~al~~~g~~~~~v--~~~~--~~~~~~~~~~~~ll~~~~~--ai~~~nD~~A~g~~~al~~~G~~vP~di 271 (348)
T 3bil_A 208 AACANSKIGEQLV--FLGG--YEQSVGFEGATKLLDQGAK--TLFAGDSMMTIGVIEACHKAGLVIGKDV 271 (348)
T ss_dssp HHHHHTTCCCCEE--ECCC--SSHHHHHHHHHHHHHTTCS--EEEESSHHHHHHHHHHHHHTTCCBTTTB
T ss_pred HHHHHcCcCccEE--EcCC--CCHHHHHHHHHHHHcCCCC--EEEEcChHHHHHHHHHHHHcCCCCCCCe
Confidence 9999998632111 1111 12344444555554443 5 4445667778899999999998755433
No 134
>3e3m_A Transcriptional regulator, LACI family; structural genomics, DNA-binding, plasmid, transcription regulation, PSI-2; 1.60A {Silicibacter pomeroyi}
Probab=97.71 E-value=0.0022 Score=70.09 Aligned_cols=209 Identities=10% Similarity=0.052 Sum_probs=132.0
Q ss_pred CceEEEeEEEecC-CCchhHHHHHHHHHHHHHhcCCCCCCCcEEEEEEecCCCChHHHHHHHHHHHhcCcEEEEccCChh
Q 002211 47 PEVLNVGAIFSFG-TVNGQVSRIAMKAAQDDINSDPRVLGGRKLSITMHDAKFNGFLSIMGALQFMETDTLAIVGPQSAV 125 (953)
Q Consensus 47 ~~~i~IG~l~~~~-~~~g~~~~~a~~lAve~iN~~g~il~g~~l~l~~~D~~~~~~~a~~~a~~li~~~v~aiiGp~~S~ 125 (953)
...-+||++.|.. ..+-.....+++-+.++. |+.+. +.++..++..-.+....++.+++.+||-.....
T Consensus 68 ~~~~~Igvi~~~~~~~~~~~~~~gi~~~a~~~--------g~~~~--~~~~~~~~~~~~~~~~~l~~~~vdGiI~~~~~~ 137 (355)
T 3e3m_A 68 KRSGFVGLLLPSLNNLHFAQTAQSLTDVLEQG--------GLQLL--LGYTAYSPEREEQLVETMLRRRPEAMVLSYDGH 137 (355)
T ss_dssp ---CEEEEEESCSBCHHHHHHHHHHHHHHHHT--------TCEEE--EEECTTCHHHHHHHHHHHHHTCCSEEEEECSCC
T ss_pred CCCCEEEEEeCCCCchHHHHHHHHHHHHHHHC--------CCEEE--EEeCCCChHHHHHHHHHHHhCCCCEEEEeCCCC
Confidence 3456799999864 333345566666666552 56664 456667777777777778888887776422222
Q ss_pred hHHHHHHhhhhCCCcEEEeecCCCCCCCCCCCcEEEccCChHHHHHHHHHHHHHcCCcEEEEEEecCcc---ccchHHHH
Q 002211 126 MAHVLSHLANELQVPLLSFTALDPTLSPLQYPFFVQTAPNDLYLMSAIAEMVSYFGWGEVIAIFNDDDQ---GRNGVTAL 202 (953)
Q Consensus 126 ~a~av~~v~~~~~vP~Is~~at~~~ls~~~~p~~fr~~p~d~~~~~ai~~~l~~~~w~~vaii~~d~~~---g~~~~~~l 202 (953)
.. .....+...++|+|...... .. +....+..++..-+..+++++...|-+++++|..+... .....+.|
T Consensus 138 ~~-~~~~~l~~~~iPvV~i~~~~---~~---~~~~~V~~D~~~~~~~a~~~L~~~G~r~I~~i~~~~~~~~~~~~R~~Gf 210 (355)
T 3e3m_A 138 TE-QTIRLLQRASIPIVEIWEKP---AH---PIGHTVGFSNERAAYDMTNALLARGFRKIVFLGEKDDDWTRGAARRAGF 210 (355)
T ss_dssp CH-HHHHHHHHCCSCEEEESSCC---SS---CSSEEEECCHHHHHHHHHHHHHHTTCCSEEEEEESSCTTSHHHHHHHHH
T ss_pred CH-HHHHHHHhCCCCEEEECCcc---CC---CCCCEEEeChHHHHHHHHHHHHHCCCCeEEEEccCcccChhHHHHHHHH
Confidence 22 34456677899999864221 11 22235566777778888899988999999999865332 45678899
Q ss_pred HHHHHhcCcEEEEEEec-CCCCCCChHHHHHHHHHHhc--CCceEEEEEcchhhHHHHHHHHHHcCCCCCceEEEE
Q 002211 203 GDKLAEIRCKISYKSAL-PPDQSVTETDVRNELVKVRM--MEARVIVVHGYSRTGLMVFDVAQRLGMMDSGYVWIA 275 (953)
Q Consensus 203 ~~~l~~~g~~v~~~~~~-~~~~~~~~~d~~~~l~~i~~--~~~~vii~~~~~~~~~~~~~~a~~~g~~~~~~~wi~ 275 (953)
.+++++.|+.+.....+ ... .+.++-...+.++.+ .++++|+. .+...+..++++++++|+..++-+-|.
T Consensus 211 ~~al~~~g~~~~~~~~~~~~~--~~~~~~~~~~~~ll~~~~~~~ai~~-~nD~~A~g~~~al~~~G~~vP~disvi 283 (355)
T 3e3m_A 211 KRAMREAGLNPDQEIRLGAPP--LSIEDGVAAAELILQEYPDTDCIFC-VSDMPAFGLLSRLKSIGVAVPEQVSVV 283 (355)
T ss_dssp HHHHHHTTSCSCCEEEESCSS--CCHHHHHHHHHHHHHHCTTCCEEEE-SSHHHHHHHHHHHHHHTCCTTTTCEEE
T ss_pred HHHHHHCCcCCCccEEEecCC--CCHHHHHHHHHHHHcCCCCCcEEEE-CChHHHHHHHHHHHHcCCCCCCceEEE
Confidence 99999999864321112 111 123334444555443 46777664 556677889999999998765444443
No 135
>3un6_A Hypothetical protein saouhsc_00137; structural genomics, center for structural genomics of infec diseases, csgid; 2.01A {Staphylococcus aureus subsp}
Probab=97.71 E-value=7.7e-05 Score=81.38 Aligned_cols=121 Identities=11% Similarity=0.113 Sum_probs=76.9
Q ss_pred CCCCChHHh-hhCCCeEEEEeCchHHH-----HHHHhhCCCcc--ceEeCCCHHHHHHHHHcCCcEEEEccchhHHHHHh
Q 002211 700 SPIKGIDTL-MTSNDRVGYQVGSFAEN-----YLIEELSIPKS--RLVALGSPEEYAIALENRTVAAVVDERPYIDLFLS 771 (953)
Q Consensus 700 ~~I~sl~dL-~~~~~~ig~~~~s~~~~-----~l~~~~~~~~~--~~~~~~~~~~~~~~l~~g~~~a~~~~~~~~~~~~~ 771 (953)
.+|++++|| . |++||+..++.... ++ +..+.... +++.+ +..+...+|.+|++||++...++......
T Consensus 143 s~I~s~~DL~k--Gk~i~v~~~~s~~~~~~~~~l-~~~Gl~~~dv~~~~~-~~~~~~~al~~G~vDa~~~~~p~~~~~~~ 218 (341)
T 3un6_A 143 MHLNEFNNNGD--DYHFGIPHRYSTHYLLLEELR-KQLKIKPGHFSYHEM-SPAEMPAALSEHRITGYSVAEPFGALGEK 218 (341)
T ss_dssp CCGGGCCSSSS--CEEEEESCSSSHHHHHHHHHH-HHTTCCTTSEEEEEC-CGGGHHHHHHTTSCSEEEEETTHHHHHHH
T ss_pred CCCCCHHHhCC--CCEEEECCCCCHHHHHHHHHH-HHcCCCHHHeEEEEc-ChHHHHHHHHcCCCCEEEecCCHHHHHHh
Confidence 368889999 6 89999987543333 33 34455433 44455 57788999999999999998888777665
Q ss_pred cCc-ceEEeCCcc-ccC-ccEEEecCC----Cc-----chHHHHHHHHhhhccccHHHHHHHhcc
Q 002211 772 DHC-QFSVRGQEF-TKS-GWGFAFPRD----SP-----LAIDMSTAILTLSENGELQRIHDKWLR 824 (953)
Q Consensus 772 ~~~-~l~~~~~~~-~~~-~~~~~~~k~----sp-----l~~~~n~~i~~l~e~G~~~~~~~~w~~ 824 (953)
+.. +.......+ ... ...++++++ .| +...+++++..+.+++.-.++..+|+.
T Consensus 219 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~p~~v~~~~~a~~~a~~~~~~~~~~~~~~~~~~~ 283 (341)
T 3un6_A 219 LGKGKTLKHGDDVIPDAYCCVLVLRGELLDQHKDVAQAFVQDYKKSGFKMNDRKQSVDIMTHHFK 283 (341)
T ss_dssp SSCCEEEEEGGGTSTTCCCEEEEECHHHHHHCHHHHHHHHHHHHHHHHHTTSHHHHHHHHHHHSS
T ss_pred cCCeEEEEeccccCCCCceEEEEECHHHHHHCHHHHHHHHHHHHHHHHHHHhCHHHHHHHHHHhC
Confidence 543 322222222 222 245666654 44 566666777777776644466677765
No 136
>2f5x_A BUGD; periplasmic binding protein, transport protein; 1.72A {Bordetella pertussis tohama I}
Probab=97.68 E-value=0.00049 Score=73.21 Aligned_cols=121 Identities=12% Similarity=0.150 Sum_probs=83.4
Q ss_pred CCCCChHHhhh------CCCeEEEE-eCchHH---HHHHHhhCCCccceEeCCCHHHHHHHHHcCCcEEEEccchhHHHH
Q 002211 700 SPIKGIDTLMT------SNDRVGYQ-VGSFAE---NYLIEELSIPKSRLVALGSPEEYAIALENRTVAAVVDERPYIDLF 769 (953)
Q Consensus 700 ~~I~sl~dL~~------~~~~ig~~-~~s~~~---~~l~~~~~~~~~~~~~~~~~~~~~~~l~~g~~~a~~~~~~~~~~~ 769 (953)
.+++|++||++ ....+|.. .|+... ..+.+..+.. ...++|....+.+.+|..|++|+.+........+
T Consensus 121 s~~~sl~dL~~~ak~~p~~~~~g~~g~Gs~~hl~~~~l~~~~Gi~-~~~Vpy~G~~~a~~aL~~G~VD~~~~~~~~~~~~ 199 (312)
T 2f5x_A 121 FPPNNIKELAEYVKKNADKISLANAGIGAASHLCGTMLVEALGVN-LLTIPYKGTAPAMNDLLGKQVDLMCDQTTNTTQQ 199 (312)
T ss_dssp CSCCSHHHHHHHHHHHGGGCEEEESSTTSHHHHHHHHHHHHHTCC-CEEEECSSHHHHHHHHHTTSSCEEEEEHHHHHHH
T ss_pred CCCCCHHHHHHHHHhCCCceEEeCCCCCcHHHHHHHHHHHHHCCC-eEEeccCChHHHHHHHHcCCccEEEechHHHHHH
Confidence 47999999975 23567766 355332 2333455553 3457899999999999999999999887766555
Q ss_pred HhcCcceEEe---CC----------ccc---------cCccEEEecCCCc--chHHHHHHHHhhhccccHHHHHHHh
Q 002211 770 LSDHCQFSVR---GQ----------EFT---------KSGWGFAFPRDSP--LAIDMSTAILTLSENGELQRIHDKW 822 (953)
Q Consensus 770 ~~~~~~l~~~---~~----------~~~---------~~~~~~~~~k~sp--l~~~~n~~i~~l~e~G~~~~~~~~w 822 (953)
++. .+++.+ .+ .+. ...++++.|+|-| +.+.+++++.++.+++.+++..+++
T Consensus 200 i~~-g~lr~Lav~~~~r~~~~pdvPt~~E~G~~~~~~~~w~gl~ap~g~p~~vv~~l~~al~~~~~~p~~~~~~~~~ 275 (312)
T 2f5x_A 200 ITS-GKVKAYAVTSLKRVPTLPDLPTMDESGYKGFEVGIWHGMWAPKGTPKPVVDKLVKSLQAGLADPKFQERMKQL 275 (312)
T ss_dssp HHT-TSSEEEEECSSSCCTTSTTSCBTTTTTCTTCCCEEEEEEEEETTCCHHHHHHHHHHHHHHHTCHHHHHHHHHT
T ss_pred HHc-CCeEEEEEcCccchhhcCCCCCHhhcCCCCeeEEEEEEEEEcCCCCHHHHHHHHHHHHHHHcCHHHHHHHHHC
Confidence 443 233322 11 111 1136788999966 9999999999999999887766655
No 137
>3g85_A Transcriptional regulator (LACI family); transcription regulator, PSI-II, structural genomics structure initiative; 1.84A {Clostridium acetobutylicum atcc 824}
Probab=97.67 E-value=0.00026 Score=75.08 Aligned_cols=208 Identities=10% Similarity=0.032 Sum_probs=128.6
Q ss_pred CCceEEEeEEEe--cCCCchhHHHHHHHHHHHHHhcCCCCCCCcEEEEEEecCCCChHHHHHHHHHHHhcCcEEEEccCC
Q 002211 46 KPEVLNVGAIFS--FGTVNGQVSRIAMKAAQDDINSDPRVLGGRKLSITMHDAKFNGFLSIMGALQFMETDTLAIVGPQS 123 (953)
Q Consensus 46 ~~~~i~IG~l~~--~~~~~g~~~~~a~~lAve~iN~~g~il~g~~l~l~~~D~~~~~~~a~~~a~~li~~~v~aiiGp~~ 123 (953)
....-+||+++| .+..+-.....+++-+.++. |+++.+...+...+. -.+....+.++++.+||-...
T Consensus 8 ~~~~~~Igvi~~~~~~~~~~~~~~~gi~~~a~~~--------g~~~~~~~~~~~~~~--~~~~~~~l~~~~vdgiIi~~~ 77 (289)
T 3g85_A 8 SQSKPTIALYWSSDISVNIISRFLRGLQSKLAKQ--------NYNYNVVICPYKTDC--LHLEKGISKENSFDAAIIANI 77 (289)
T ss_dssp ---CCEEEEEEETTSCGGGHHHHHHHHHHHHHHT--------TTCSEEEEEEECTTC--GGGCGGGSTTTCCSEEEESSC
T ss_pred cCCCceEEEEeccccchHHHHHHHHHHHHHHHHc--------CCeEEEEecCCCchh--HHHHHHHHhccCCCEEEEecC
Confidence 445678999999 34555556677777777663 455555433322221 122334455668888875433
Q ss_pred hhhHHHHHHhhhhCCCcEEEeecCCCCCCCCCCCcEEEccCChHHHHHHHHHHHHHcCCcEEEEEEecC--ccccchHHH
Q 002211 124 AVMAHVLSHLANELQVPLLSFTALDPTLSPLQYPFFVQTAPNDLYLMSAIAEMVSYFGWGEVIAIFNDD--DQGRNGVTA 201 (953)
Q Consensus 124 S~~a~av~~v~~~~~vP~Is~~at~~~ls~~~~p~~fr~~p~d~~~~~ai~~~l~~~~w~~vaii~~d~--~~g~~~~~~ 201 (953)
......+... ...++|+|......+ .+-.+..++...+..+++++...|-++++++..+. .......+.
T Consensus 78 ~~~~~~~~~~-~~~~iPvV~~~~~~~--------~~~~V~~D~~~~~~~a~~~L~~~G~~~i~~i~~~~~~~~~~~R~~g 148 (289)
T 3g85_A 78 SNYDLEYLNK-ASLTLPIILFNRLSN--------KYSSVNVDNYKMGEKASLLFAKKRYKSAAAILTESLNDAMDNRNKG 148 (289)
T ss_dssp CHHHHHHHHH-CCCSSCEEEESCCCS--------SSEEEEECHHHHHHHHHHHHHHTTCCBCEEEECCCSSHHHHHHHHH
T ss_pred CcccHHHHHh-ccCCCCEEEECCCCC--------CCCEEEeCHHHHHHHHHHHHHHcCCCEEEEEeCCcccccHHHHHHH
Confidence 3333333333 367999998765322 22345667777888899999899999999998653 334567889
Q ss_pred HHHHHHhcCcEEEEEEecCCCCCCChHHHHHHHHHHhcC--CceEEEEEcchhhHHHHHHHHHHcCCCCCceEEEE
Q 002211 202 LGDKLAEIRCKISYKSALPPDQSVTETDVRNELVKVRMM--EARVIVVHGYSRTGLMVFDVAQRLGMMDSGYVWIA 275 (953)
Q Consensus 202 l~~~l~~~g~~v~~~~~~~~~~~~~~~d~~~~l~~i~~~--~~~vii~~~~~~~~~~~~~~a~~~g~~~~~~~wi~ 275 (953)
|.+++++.|+.+.....+... .+..+....+.++.+. ++++|+ +.+...+..++++++++|+..++-+-+.
T Consensus 149 f~~~l~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~l~~~~~~~ai~-~~~d~~a~g~~~al~~~g~~vP~di~vi 221 (289)
T 3g85_A 149 FIETCHKNGIKISENHIIAAE--NSIHGGVDAAKKLMKLKNTPKALF-CNSDSIALGVISVLNKRQISIPDDIEIV 221 (289)
T ss_dssp HHHHHHHTTCBCCGGGEEECC--SSHHHHHHHHHHHTTSSSCCSEEE-ESSHHHHHHHHHHHHHTTCCTTTTCEEE
T ss_pred HHHHHHHcCCCCChhheeccC--CCHHHHHHHHHHHHcCCCCCcEEE-EcCCHHHHHHHHHHHHcCCCCCCceEEE
Confidence 999999998764311111111 2245555566666554 467766 4556678889999999998765444333
No 138
>3cs3_A Sugar-binding transcriptional regulator, LACI FAM; structural genomics, sugar-binding transcriptional regulator structure initiative; 2.40A {Enterococcus faecalis}
Probab=97.67 E-value=0.0019 Score=67.84 Aligned_cols=199 Identities=9% Similarity=-0.057 Sum_probs=122.5
Q ss_pred CceEEEeEEEec-CCCchhHHHHHHHHHHHHHhcCCCCCCCcEEEEEEecCCCChHHHHHHHHHHHhcCcEEEEccCChh
Q 002211 47 PEVLNVGAIFSF-GTVNGQVSRIAMKAAQDDINSDPRVLGGRKLSITMHDAKFNGFLSIMGALQFMETDTLAIVGPQSAV 125 (953)
Q Consensus 47 ~~~i~IG~l~~~-~~~~g~~~~~a~~lAve~iN~~g~il~g~~l~l~~~D~~~~~~~a~~~a~~li~~~v~aiiGp~~S~ 125 (953)
....+||++.|. +..+-.....+++-+.++ .|+++.+.. +..++..-. ++ ++.+||-.....
T Consensus 6 ~~~~~Igvi~~~~~~~~~~~~~~gi~~~a~~--------~g~~~~~~~--~~~~~~~~~----~~---~vdgiI~~~~~~ 68 (277)
T 3cs3_A 6 RQTNIIGVYLADYGGSFYGELLEGIKKGLAL--------FDYEMIVCS--GKKSHLFIP----EK---MVDGAIILDWTF 68 (277)
T ss_dssp CCCCEEEEEECSSCTTTHHHHHHHHHHHHHT--------TTCEEEEEE--STTTTTCCC----TT---TCSEEEEECTTS
T ss_pred cCCcEEEEEecCCCChhHHHHHHHHHHHHHH--------CCCeEEEEe--CCCCHHHHh----hc---cccEEEEecCCC
Confidence 345689999986 345555666777766654 256666543 333322111 11 677666322221
Q ss_pred hHHHHHHhhhhCCCcEEEeecCCCCCCCCCCCcEEEccCChHHHHHHHHHHHHHcCCcEEEEEEecC--ccccchHHHHH
Q 002211 126 MAHVLSHLANELQVPLLSFTALDPTLSPLQYPFFVQTAPNDLYLMSAIAEMVSYFGWGEVIAIFNDD--DQGRNGVTALG 203 (953)
Q Consensus 126 ~a~av~~v~~~~~vP~Is~~at~~~ls~~~~p~~fr~~p~d~~~~~ai~~~l~~~~w~~vaii~~d~--~~g~~~~~~l~ 203 (953)
.... ...+...++|+|......+ + +.+..+..++...+..+++++...|.++++++..+. .......+.|.
T Consensus 69 ~~~~-~~~l~~~~iPvV~~~~~~~---~---~~~~~V~~D~~~~~~~a~~~L~~~G~~~i~~i~~~~~~~~~~~R~~gf~ 141 (277)
T 3cs3_A 69 PTKE-IEKFAERGHSIVVLDRTTE---H---RNIRQVLLDNRGGATQAIEQFVNVGSKKVLLLSGPEKGYDSQERLAVST 141 (277)
T ss_dssp CHHH-HHHHHHTTCEEEESSSCCC---S---TTEEEEEECHHHHHHHHHHHHHHTTCSCEEEEECCTTSHHHHHHHHHHH
T ss_pred CHHH-HHHHHhcCCCEEEEecCCC---C---CCCCEEEeCcHHHHHHHHHHHHHcCCceEEEEeCCccCccHHHHHHHHH
Confidence 1222 3445568999998754322 1 234456667777788888998888999999998653 23456678899
Q ss_pred HHHHhcCcEEEEEEecCCCCCCChHHHHHHHHHHhcC---CceEEEEEcchhhHHHHHHHHHHcCCCCCceEEEE
Q 002211 204 DKLAEIRCKISYKSALPPDQSVTETDVRNELVKVRMM---EARVIVVHGYSRTGLMVFDVAQRLGMMDSGYVWIA 275 (953)
Q Consensus 204 ~~l~~~g~~v~~~~~~~~~~~~~~~d~~~~l~~i~~~---~~~vii~~~~~~~~~~~~~~a~~~g~~~~~~~wi~ 275 (953)
+++++.|+++. .. ... .+..+-...+.++.+. ++++|+. .+...+..+++++++.|+..++-+.+.
T Consensus 142 ~~l~~~g~~~~-~~--~~~--~~~~~~~~~~~~~l~~~~~~~~ai~~-~~d~~a~g~~~al~~~g~~vP~di~vv 210 (277)
T 3cs3_A 142 RELTRFGIPYE-II--QGD--FTEPSGYAAAKKILSQPQTEPVDVFA-FNDEMAIGVYKYVAETNYQMGKDIRII 210 (277)
T ss_dssp HHHHHTTCCEE-EE--ECC--SSHHHHHHHHHHHTTSCCCSSEEEEE-SSHHHHHHHHHHHTTSSCCBTTTEEEE
T ss_pred HHHHHcCCCee-EE--eCC--CChhHHHHHHHHHHhcCCCCCcEEEE-cChHHHHHHHHHHHHcCCCCCCcEEEE
Confidence 99999998765 11 111 1244445566666554 5677654 455667889999999998755544444
No 139
>3h5o_A Transcriptional regulator GNTR; transcription regulator, GNTR,chromobacterium violaceum, PSI, SGX, DNA-binding; 2.30A {Chromobacterium violaceum}
Probab=97.65 E-value=0.0024 Score=69.33 Aligned_cols=207 Identities=9% Similarity=0.012 Sum_probs=133.2
Q ss_pred CceEEEeEEEecC-CCchhHHHHHHHHHHHHHhcCCCCCCCcEEEEEEecCCCChHHHHHHHHHHHhcCcEEEEc-cCCh
Q 002211 47 PEVLNVGAIFSFG-TVNGQVSRIAMKAAQDDINSDPRVLGGRKLSITMHDAKFNGFLSIMGALQFMETDTLAIVG-PQSA 124 (953)
Q Consensus 47 ~~~i~IG~l~~~~-~~~g~~~~~a~~lAve~iN~~g~il~g~~l~l~~~D~~~~~~~a~~~a~~li~~~v~aiiG-p~~S 124 (953)
...-+||++.|.. ..+-.....+++-+.++. |+++. +.++..++..-.+....++.+++.+||= |...
T Consensus 60 ~~~~~Igvi~~~~~~~~~~~~~~gi~~~a~~~--------g~~~~--~~~~~~~~~~~~~~~~~l~~~~vdGiIi~~~~~ 129 (339)
T 3h5o_A 60 AKSRTVLVLIPSLANTVFLETLTGIETVLDAA--------GYQML--IGNSHYDAGQELQLLRAYLQHRPDGVLITGLSH 129 (339)
T ss_dssp ---CEEEEEESCSTTCTTHHHHHHHHHHHHHT--------TCEEE--EEECTTCHHHHHHHHHHHHTTCCSEEEEECSCC
T ss_pred CCCCEEEEEeCCCCCHHHHHHHHHHHHHHHHC--------CCEEE--EEeCCCChHHHHHHHHHHHcCCCCEEEEeCCCC
Confidence 3456899999863 445556777888777762 56654 5677778877777777888888887763 2222
Q ss_pred hhHHHHHHhhhhCCCcEEEeecCCCCCCCCCCCcEEEccCChHHHHHHHHHHHHHcCCcEEEEEEecC-ccccchHHHHH
Q 002211 125 VMAHVLSHLANELQVPLLSFTALDPTLSPLQYPFFVQTAPNDLYLMSAIAEMVSYFGWGEVIAIFNDD-DQGRNGVTALG 203 (953)
Q Consensus 125 ~~a~av~~v~~~~~vP~Is~~at~~~ls~~~~p~~fr~~p~d~~~~~ai~~~l~~~~w~~vaii~~d~-~~g~~~~~~l~ 203 (953)
.. .....+...++|+|...... .. +.. .+..++...+..+++++...|.++++++.... .......+.|.
T Consensus 130 ~~--~~~~~l~~~~iPvV~~~~~~----~~--~~~-~V~~D~~~~~~~a~~~L~~~G~~~I~~i~~~~~~~~~~R~~Gf~ 200 (339)
T 3h5o_A 130 AE--PFERILSQHALPVVYMMDLA----DD--GRC-CVGFSQEDAGAAITRHLLSRGKRRIGFLGAQLDERVMKRLDGYR 200 (339)
T ss_dssp CT--THHHHHHHTTCCEEEEESCC----SS--SCC-EEECCHHHHHHHHHHHHHHTTCCSEEEEEESCCHHHHHHHHHHH
T ss_pred CH--HHHHHHhcCCCCEEEEeecC----CC--CCe-EEEECHHHHHHHHHHHHHHCCCCeEEEEeCCCCccHHHHHHHHH
Confidence 21 34456677899999875322 11 222 55667777788888999889999999998653 33445678899
Q ss_pred HHHHhcCcEEEE-EEecCCCCCCChHHHHHHHHHHhc--CCceEEEEEcchhhHHHHHHHHHHcCCCCCceEEEE
Q 002211 204 DKLAEIRCKISY-KSALPPDQSVTETDVRNELVKVRM--MEARVIVVHGYSRTGLMVFDVAQRLGMMDSGYVWIA 275 (953)
Q Consensus 204 ~~l~~~g~~v~~-~~~~~~~~~~~~~d~~~~l~~i~~--~~~~vii~~~~~~~~~~~~~~a~~~g~~~~~~~wi~ 275 (953)
+++++.|+.... ....... .+..+-...+.++.+ .++++|+. .+...+..+++++++.|+..++-+-+.
T Consensus 201 ~al~~~g~~~~~~~~~~~~~--~~~~~~~~~~~~ll~~~~~~~ai~~-~nD~~A~g~~~al~~~G~~vP~disvv 272 (339)
T 3h5o_A 201 AALDAADCRDAGLEWLDPQP--SSMQMGADMLDRALAERPDCDALFC-CNDDLAIGALARSQQLGIAVPERLAIA 272 (339)
T ss_dssp HHHHHTTCCCGGGEEEECSC--CCHHHHHHHHHHHHHHCTTCCEEEE-SSHHHHHHHHHHHHHTTCCTTTTCEEE
T ss_pred HHHHHCCCCCCChheEecCC--CCHHHHHHHHHHHHcCCCCCcEEEE-CChHHHHHHHHHHHHcCCCCCCCEEEE
Confidence 999998872110 0011111 223444445555543 36777764 556678889999999998765544443
No 140
>3uug_A Multiple sugar-binding periplasmic receptor CHVE; periplasmic binding protein, sugar-binding protein, sugar binding protein; HET: BDP; 1.75A {Agrobacterium tumefaciens} PDB: 3urm_A*
Probab=97.65 E-value=0.0018 Score=69.97 Aligned_cols=206 Identities=7% Similarity=-0.031 Sum_probs=133.5
Q ss_pred ceEEEeEEEecC-CCchhHHHHHHHHHHHHHhcCCCCCCCcEEEEEEecCCCChHHHHHHHHHHHhcCcEEEE-ccCChh
Q 002211 48 EVLNVGAIFSFG-TVNGQVSRIAMKAAQDDINSDPRVLGGRKLSITMHDAKFNGFLSIMGALQFMETDTLAIV-GPQSAV 125 (953)
Q Consensus 48 ~~i~IG~l~~~~-~~~g~~~~~a~~lAve~iN~~g~il~g~~l~l~~~D~~~~~~~a~~~a~~li~~~v~aii-Gp~~S~ 125 (953)
+..+||++.|.. ..+-.....+++-+.++. |+++. +.++..++..-.+....++++++.+|| .|..+.
T Consensus 2 ~~~~Igvi~~~~~~~~~~~~~~gi~~~a~~~--------g~~~~--~~~~~~~~~~~~~~i~~~~~~~vdgiIi~~~~~~ 71 (330)
T 3uug_A 2 DKGSVGIAMPTKSSARWIDDGNNIVKQLQEA--------GYKTD--LQYADDDIPNQLSQIENMVTKGVKVLVIASIDGT 71 (330)
T ss_dssp CCCEEEEEECCSSSTHHHHHHHHHHHHHHHT--------TCEEE--EEECTTCHHHHHHHHHHHHHHTCSEEEECCSSGG
T ss_pred CCcEEEEEeCCCcchHHHHHHHHHHHHHHHc--------CCEEE--EeeCCCCHHHHHHHHHHHHHcCCCEEEEEcCCch
Confidence 346899999964 455556677887777762 55555 456778888888888899999888877 455544
Q ss_pred hHHHHHHhhhhCCCcEEEeecCCCCCCCCCCCcEEEccCChHHHHHHHHHHHHH-------cCCcEEEEEEecC--cccc
Q 002211 126 MAHVLSHLANELQVPLLSFTALDPTLSPLQYPFFVQTAPNDLYLMSAIAEMVSY-------FGWGEVIAIFNDD--DQGR 196 (953)
Q Consensus 126 ~a~av~~v~~~~~vP~Is~~at~~~ls~~~~p~~fr~~p~d~~~~~ai~~~l~~-------~~w~~vaii~~d~--~~g~ 196 (953)
........+...++|+|......+.. .... ..+..++...+..+++++.. .|-++++++.... ....
T Consensus 72 ~~~~~~~~~~~~giPvV~~~~~~~~~--~~~~--~~V~~D~~~~g~~a~~~l~~~~~~~~~~G~~~i~~i~g~~~~~~~~ 147 (330)
T 3uug_A 72 TLSDVLKQAGEQGIKVIAYDRLIRNS--GDVS--YYATFDNFQVGVLQATSITDKLGLKDGKGPFNIELFGGSPDDNNAF 147 (330)
T ss_dssp GGHHHHHHHHHTTCEEEEESSCCCSC--TTCC--EEEEECHHHHHHHHHHHHHHHHTGGGTCCCEEEEECBCCTTCHHHH
T ss_pred hHHHHHHHHHHCCCCEEEECCCCCCC--Ccee--EEEEeCHHHHHHHHHHHHHHHhcccCCCCceEEEEEECCCCCchHH
Confidence 44555667778899999876544321 1122 34455677778888888776 6888999997432 3345
Q ss_pred chHHHHHHHHHhc---C-cEEEEEEe-----cCCCCCCChHHHHHHHHHHhc-----CCceEEEEEcchhhHHHHHHHHH
Q 002211 197 NGVTALGDKLAEI---R-CKISYKSA-----LPPDQSVTETDVRNELVKVRM-----MEARVIVVHGYSRTGLMVFDVAQ 262 (953)
Q Consensus 197 ~~~~~l~~~l~~~---g-~~v~~~~~-----~~~~~~~~~~d~~~~l~~i~~-----~~~~vii~~~~~~~~~~~~~~a~ 262 (953)
...+.|.+++++. | +.+..... .... .+.+.-...+.++.+ .++++|+ +.+...+..++++++
T Consensus 148 ~R~~Gf~~al~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~l~~~~~~~~~~ai~-~~nd~~A~g~~~al~ 224 (330)
T 3uug_A 148 FFYDGAMSVLKPYIDSGKLVVKSGQMGMDKVGTLR--WDPATAQARMDNLLSAYYTDAKVDAVL-SPYDGLSIGIISSLK 224 (330)
T ss_dssp HHHHHHHHHHHHHHHHTSEECTTCCCSHHHHBCGG--GCHHHHHHHHHHHHHHHCSSSCCCEEE-CSSHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhccccCceEEeecccccccccCCC--CCHHHHHHHHHHHHHhcCCCCCeEEEE-ECCCchHHHHHHHHH
Confidence 5678888888886 3 54432110 0111 112333334444433 4667655 445567888999999
Q ss_pred HcCCCCCc
Q 002211 263 RLGMMDSG 270 (953)
Q Consensus 263 ~~g~~~~~ 270 (953)
++|+..++
T Consensus 225 ~~g~~vP~ 232 (330)
T 3uug_A 225 GVGYGTKD 232 (330)
T ss_dssp HTTCSSSS
T ss_pred HcCCCCCC
Confidence 99987653
No 141
>1byk_A Protein (trehalose operon repressor); LACI family, phosphate binding, protein structure, trehalose repressor, gene regulation; HET: T6P; 2.50A {Escherichia coli} SCOP: c.93.1.1
Probab=97.63 E-value=0.0022 Score=66.36 Aligned_cols=198 Identities=11% Similarity=0.012 Sum_probs=126.6
Q ss_pred EEeEEEecC-CCchhHHHHHHHHHHHHHhcCCCCCCCcEEEEEEecCCCChHHHHHHHHHHHhcCcEEEEccCChhhHHH
Q 002211 51 NVGAIFSFG-TVNGQVSRIAMKAAQDDINSDPRVLGGRKLSITMHDAKFNGFLSIMGALQFMETDTLAIVGPQSAVMAHV 129 (953)
Q Consensus 51 ~IG~l~~~~-~~~g~~~~~a~~lAve~iN~~g~il~g~~l~l~~~D~~~~~~~a~~~a~~li~~~v~aiiGp~~S~~a~a 129 (953)
+||++.|.. ..+-.....+++-+.++. |+++.+ .++..++..-.+....++++++.+||-.......
T Consensus 4 ~Igvi~~~~~~~~~~~~~~gi~~~~~~~--------g~~~~~--~~~~~~~~~~~~~~~~l~~~~vdgiI~~~~~~~~-- 71 (255)
T 1byk_A 4 VVAIIVTRLDSLSENLAVQTMLPAFYEQ--------GYDPIM--MESQFSPQLVAEHLGVLKRRNIDGVVLFGFTGIT-- 71 (255)
T ss_dssp EEEEEESCTTCHHHHHHHHHHHHHHHHH--------TCEEEE--EECTTCHHHHHHHHHHHHTTTCCEEEEECCTTCC--
T ss_pred EEEEEeCCCCCccHHHHHHHHHHHHHHc--------CCEEEE--EeCCCcHHHHHHHHHHHHhcCCCEEEEecCcccc--
Confidence 689999853 444445667777776663 555554 4566677666666677777788887642221111
Q ss_pred HHHhhhhCCCcEEEeecCCCCCCCCCCCcEEEccCChHHHHHHHHHHHHHcCCcEEEEEEec--C-ccccchHHHHHHHH
Q 002211 130 LSHLANELQVPLLSFTALDPTLSPLQYPFFVQTAPNDLYLMSAIAEMVSYFGWGEVIAIFND--D-DQGRNGVTALGDKL 206 (953)
Q Consensus 130 v~~v~~~~~vP~Is~~at~~~ls~~~~p~~fr~~p~d~~~~~ai~~~l~~~~w~~vaii~~d--~-~~g~~~~~~l~~~l 206 (953)
.+.....++|+|...... +.+-.+..++...+..+++++...|.++++++... + .......+.|.+++
T Consensus 72 -~~~l~~~~~pvV~~~~~~--------~~~~~V~~d~~~~~~~a~~~L~~~G~~~I~~i~~~~~~~~~~~~R~~gf~~al 142 (255)
T 1byk_A 72 -EEMLAHWQSSLVLLARDA--------KGFASVCYDDEGAIKILMQRLYDQGHRNISYLGVPHSDVTTGKRRHEAYLAFC 142 (255)
T ss_dssp -TTTSGGGSSSEEEESSCC--------SSCEEEEECHHHHHHHHHHHHHHTTCCCEEEECCCTTSTTTTHHHHHHHHHHH
T ss_pred -HHHHHhcCCCEEEEcccc--------CCCCEEEEccHHHHHHHHHHHHHcCCCeEEEEecCCCCcccHHHHHHHHHHHH
Confidence 123456689999875421 12334556677778888999888899999999854 2 34566788999999
Q ss_pred HhcCcEEEEEEecCCCCCCChHHHHHHHHHHhcCCceEEEEEcchhhHHHHHHHHHHcCCCCCceEEEEeC
Q 002211 207 AEIRCKISYKSALPPDQSVTETDVRNELVKVRMMEARVIVVHGYSRTGLMVFDVAQRLGMMDSGYVWIATT 277 (953)
Q Consensus 207 ~~~g~~v~~~~~~~~~~~~~~~d~~~~l~~i~~~~~~vii~~~~~~~~~~~~~~a~~~g~~~~~~~wi~~~ 277 (953)
++.|+.+.. +... .+..+-...+.++.+.++++|+. .+...+..+++++++.|+ .+...++-|
T Consensus 143 ~~~g~~~~~---~~~~--~~~~~~~~~~~~~l~~~~~ai~~-~~d~~A~g~~~al~~~g~--~di~vig~d 205 (255)
T 1byk_A 143 KAHKLHPVA---ALPG--LAMKQGYENVAKVITPETTALLC-ATDTLALGASKYLQEQRI--DTLQLASVG 205 (255)
T ss_dssp HHTTCCCEE---ECCC--SCHHHHHHHSGGGCCTTCCEEEE-SSHHHHHHHHHHHHHTTC--CSCEEEEEC
T ss_pred HHcCCCcce---eecC--CccchHHHHHHHHhcCCCCEEEE-eChHHHHHHHHHHHHcCC--CcEEEEEeC
Confidence 999876431 2222 22344444455555556887665 455678889999999997 344444443
No 142
>1gud_A ALBP, D-allose-binding periplasmic protein; periplasmic binding protein, X-RAY crystallography, hinge bending, conformational change; 1.7A {Escherichia coli} SCOP: c.93.1.1 PDB: 1gub_A 1rpj_A*
Probab=97.60 E-value=0.0077 Score=63.49 Aligned_cols=209 Identities=10% Similarity=0.011 Sum_probs=127.2
Q ss_pred EEeEEEec-CCCchhHHHHHHHHHHHHHhcCCCCCCCcEEEEEEec--CCCChHHHHHHHHHHHhcCcEEEEc-cCChhh
Q 002211 51 NVGAIFSF-GTVNGQVSRIAMKAAQDDINSDPRVLGGRKLSITMHD--AKFNGFLSIMGALQFMETDTLAIVG-PQSAVM 126 (953)
Q Consensus 51 ~IG~l~~~-~~~~g~~~~~a~~lAve~iN~~g~il~g~~l~l~~~D--~~~~~~~a~~~a~~li~~~v~aiiG-p~~S~~ 126 (953)
+||++.|- +..+-.....+++-+.++. |+++.+ .+ +..++..-......++.++|.+||= |..+..
T Consensus 3 ~Igvi~~~~~~~f~~~~~~gi~~~a~~~--------g~~~~~--~~~~~~~~~~~~~~~~~~~~~~~vdgiIi~~~~~~~ 72 (288)
T 1gud_A 3 EYAVVLKTLSNPFWVDMKKGIEDEAKTL--------GVSVDI--FASPSEGDFQSQLQLFEDLSNKNYKGIAFAPLSSVN 72 (288)
T ss_dssp EEEEEESCSSSHHHHHHHHHHHHHHHHH--------TCCEEE--EECSSTTCHHHHHHHHHHHHTSSEEEEEECCSSSST
T ss_pred EEEEEeCCCCchHHHHHHHHHHHHHHHc--------CCEEEE--eCCCCCCCHHHHHHHHHHHHHcCCCEEEEeCCChHH
Confidence 68999875 3444445667777776664 455544 45 6667766666677788888988773 433322
Q ss_pred HHHHHHhhhhCCCcEEEeecCCCCCC----CCCCCcEEEccCChHHHHHHHHHHHHHc-C--CcEEEEEEecCcc--ccc
Q 002211 127 AHVLSHLANELQVPLLSFTALDPTLS----PLQYPFFVQTAPNDLYLMSAIAEMVSYF-G--WGEVIAIFNDDDQ--GRN 197 (953)
Q Consensus 127 a~av~~v~~~~~vP~Is~~at~~~ls----~~~~p~~fr~~p~d~~~~~ai~~~l~~~-~--w~~vaii~~d~~~--g~~ 197 (953)
.......+...++|+|......+... ...+ .-.+..++..-+..++++|... | -+++++|...... ...
T Consensus 73 ~~~~~~~~~~~~iPvV~~~~~~~~~~~~~~~~~~--~~~V~~D~~~~g~~a~~~L~~~~G~~~~~I~~i~g~~~~~~~~~ 150 (288)
T 1gud_A 73 LVMPVARAWKKGIYLVNLDEKIDMDNLKKAGGNV--EAFVTTDNVAVGAKGASFIIDKLGAEGGEVAIIEGKAGNASGEA 150 (288)
T ss_dssp THHHHHHHHHTTCEEEEESSCCCHHHHHHTTCCC--SEEEECCHHHHHHHHHHHHHHHHGGGCEEEEEEECSTTCHHHHH
T ss_pred HHHHHHHHHHCCCeEEEECCCCCcccccccCCce--eEEECCChHHHHHHHHHHHHHHhCCCCCEEEEEeCCCCCchHhH
Confidence 22233445567999998754221100 0012 0234566667778888887766 8 8999999854332 345
Q ss_pred hHHHHHHHHHhc-CcEEEEEEecCCCCCCChHHHHHHHHHHhc--CCceEEEEEcchhhHHHHHHHHHHcCCCCCceEEE
Q 002211 198 GVTALGDKLAEI-RCKISYKSALPPDQSVTETDVRNELVKVRM--MEARVIVVHGYSRTGLMVFDVAQRLGMMDSGYVWI 274 (953)
Q Consensus 198 ~~~~l~~~l~~~-g~~v~~~~~~~~~~~~~~~d~~~~l~~i~~--~~~~vii~~~~~~~~~~~~~~a~~~g~~~~~~~wi 274 (953)
..+.|.+++++. |+++.....-. .+.++-...++++.+ ..+++|+. .+...+..++++++++|+. .+...+
T Consensus 151 R~~Gf~~al~~~~g~~~~~~~~~~----~~~~~~~~~~~~ll~~~~~~~ai~~-~nD~~A~g~~~al~~~G~~-~dv~vv 224 (288)
T 1gud_A 151 RRNGATEAFKKASQIKLVASQPAD----WDRIKALDVATNVLQRNPNIKAIYC-ANDTMAMGVAQAVANAGKT-GKVLVV 224 (288)
T ss_dssp HHHHHHHHHHTCTTEEEEEEEECT----TCHHHHHHHHHHHHHHCTTCCEEEE-SSHHHHHHHHHHHHHTTCT-TTSEEE
T ss_pred HHHHHHHHHHhCCCcEEEEeecCC----ccHHHHHHHHHHHHHhCCCceEEEE-CCCchHHHHHHHHHhcCCC-CCeEEE
Confidence 678899999988 88765432211 123444444555443 34676554 4556788899999999984 344455
Q ss_pred EeC
Q 002211 275 ATT 277 (953)
Q Consensus 275 ~~~ 277 (953)
+-|
T Consensus 225 GfD 227 (288)
T 1gud_A 225 GTD 227 (288)
T ss_dssp EES
T ss_pred EeC
Confidence 544
No 143
>3e61_A Putative transcriptional repressor of ribose OPER; structural genomics, DNA-binding, transcripti regulation, PSI-2; 2.00A {Staphylococcus saprophyticus subsp}
Probab=97.57 E-value=0.00093 Score=70.17 Aligned_cols=200 Identities=9% Similarity=0.021 Sum_probs=122.1
Q ss_pred CceEEEeEEEecC-CCchhHHHHHHHHHHHHHhcCCCCCCCcEEEEEEecCCCChHHHHHHHHHHHhcCcEEEEccCChh
Q 002211 47 PEVLNVGAIFSFG-TVNGQVSRIAMKAAQDDINSDPRVLGGRKLSITMHDAKFNGFLSIMGALQFMETDTLAIVGPQSAV 125 (953)
Q Consensus 47 ~~~i~IG~l~~~~-~~~g~~~~~a~~lAve~iN~~g~il~g~~l~l~~~D~~~~~~~a~~~a~~li~~~v~aiiGp~~S~ 125 (953)
...-+||+++|.. ..+-.....+++-+.++. |+++. +.++..++..-......++++++.+||-...+
T Consensus 6 ~~~~~Ig~i~~~~~~~~~~~~~~gi~~~~~~~--------g~~~~--~~~~~~~~~~~~~~~~~l~~~~~dgiIi~~~~- 74 (277)
T 3e61_A 6 RKSKLIGLLLPDMSNPFFTLIARGVEDVALAH--------GYQVL--IGNSDNDIKKAQGYLATFVSHNCTGMISTAFN- 74 (277)
T ss_dssp ----CEEEEESCTTSHHHHHHHHHHHHHHHHT--------TCCEE--EEECTTCHHHHHHHHHHHHHTTCSEEEECGGG-
T ss_pred CCCCEEEEEECCCCCHHHHHHHHHHHHHHHHC--------CCEEE--EEeCCCCHHHHHHHHHHHHhCCCCEEEEecCC-
Confidence 3456799999863 444455667777666652 45554 46666777777777778888888887753322
Q ss_pred hHHHHHH-hhhhCCCcEEEeecCCCCCCCCCCCcEEEccCChHHHHHHHHHHHHHcCCcEEEEEEec--CccccchHHHH
Q 002211 126 MAHVLSH-LANELQVPLLSFTALDPTLSPLQYPFFVQTAPNDLYLMSAIAEMVSYFGWGEVIAIFND--DDQGRNGVTAL 202 (953)
Q Consensus 126 ~a~av~~-v~~~~~vP~Is~~at~~~ls~~~~p~~fr~~p~d~~~~~ai~~~l~~~~w~~vaii~~d--~~~g~~~~~~l 202 (953)
. .... .+...++|+|......+.. . .+..++...+..+++++...|-++++++... ........+.|
T Consensus 75 -~-~~~~~~l~~~~iPvV~~~~~~~~~-----~---~V~~D~~~~g~~a~~~L~~~G~~~i~~i~~~~~~~~~~~R~~gf 144 (277)
T 3e61_A 75 -E-NIIENTLTDHHIPFVFIDRINNEH-----N---GISTNHFKGGQLQAEVVRKGKGKNVLIVHENLLIDAFHQRVQGI 144 (277)
T ss_dssp -H-HHHHHHHHHC-CCEEEGGGCC-----------------HHHHHHHHHHHHHHTTCCSEEEEESCTTSHHHHHHHHHH
T ss_pred -h-HHHHHHHHcCCCCEEEEeccCCCC-----C---eEEechHHHHHHHHHHHHHCCCCeEEEEeCCCCCccHHHHHHHH
Confidence 2 2244 6677899999876543211 1 5566777788889999988999999999854 33455667899
Q ss_pred HHHHHhcCcEEEEEEecCCCCCCChHHHHHHHHHHhc-CCceEEEEEcchhhHHHHHHHHHHcCCCCCceEEEE
Q 002211 203 GDKLAEIRCKISYKSALPPDQSVTETDVRNELVKVRM-MEARVIVVHGYSRTGLMVFDVAQRLGMMDSGYVWIA 275 (953)
Q Consensus 203 ~~~l~~~g~~v~~~~~~~~~~~~~~~d~~~~l~~i~~-~~~~vii~~~~~~~~~~~~~~a~~~g~~~~~~~wi~ 275 (953)
.+++++.|+.+.. ...... .....+.. ++. .++++|+.. +...+..++++++++|+..++-+-|.
T Consensus 145 ~~~l~~~~~~~~~-~~~~~~--~~~~~~~~----l~~~~~~~ai~~~-~d~~a~g~~~al~~~g~~vP~di~vi 210 (277)
T 3e61_A 145 KYILDQQRIDYKM-LEATLL--DNDKKFID----LIKELSIDSIICS-NDLLAINVLGIVQRYHFKVPAEIQII 210 (277)
T ss_dssp HHHHHC---CEEE-EEGGGG--GSHHHHHH----HHHHHTCCEEEES-SHHHHHHHHHHHHHTTCCTTTTCEEE
T ss_pred HHHHHHcCCCccc-eecCCC--CHHHHHHH----hhcCCCCCEEEEC-CcHHHHHHHHHHHHcCCCCCCceEEE
Confidence 9999999887654 212111 11222222 332 467877654 55677889999999998755444444
No 144
>2qpq_A Protein BUG27; alpha/beta domain, venus flytrap, transport protein; HET: CIT; 1.92A {Bordetella pertussis}
Probab=97.57 E-value=0.00077 Score=71.46 Aligned_cols=121 Identities=12% Similarity=0.104 Sum_probs=83.4
Q ss_pred CCCCChHHhhh------CCCeEEEE-eCchHH---HHHHHhhCCCccceEeCCCHHHHHHHHHcCCcEEEEccchhHHHH
Q 002211 700 SPIKGIDTLMT------SNDRVGYQ-VGSFAE---NYLIEELSIPKSRLVALGSPEEYAIALENRTVAAVVDERPYIDLF 769 (953)
Q Consensus 700 ~~I~sl~dL~~------~~~~ig~~-~~s~~~---~~l~~~~~~~~~~~~~~~~~~~~~~~l~~g~~~a~~~~~~~~~~~ 769 (953)
.+++|++||+. ....+|.. .|+..+ ..+.+..+.. ...++|....+.+.+|..|++|+.+........+
T Consensus 112 s~~~sl~dL~~~ak~~p~~~~~g~~g~Gs~~hl~~~~l~~~~G~~-~~~Vpy~g~~~a~~al~~G~vD~~~~~~~~~~~~ 190 (301)
T 2qpq_A 112 SKYKTLGELMAAAKQTNTQVTYGSCGNGTPQHLAGELLNVSAKTH-MVHVPYKGCGPALNDVLGSQIGLAVVTASSAIPF 190 (301)
T ss_dssp CSCCSHHHHHHHTCSSSCCCEEEESSTTSHHHHHHHHHHHHHTCC-CEEEECSSHHHHHHHHHTTSSSCEEEEHHHHHHH
T ss_pred CCCCCHHHHHHHHHhCCCceEEecCCCCcHHHHHHHHHHHHhCCC-eEEeccCChHHHHHHHHCCCccEEEEcHHHHHHH
Confidence 47899999975 12456665 254332 2333445553 3457899999999999999999999887665544
Q ss_pred HhcCcceEEe---CC----------cc--------c-cCccEEEecCCCc--chHHHHHHHHhhhccccHHHHHHHh
Q 002211 770 LSDHCQFSVR---GQ----------EF--------T-KSGWGFAFPRDSP--LAIDMSTAILTLSENGELQRIHDKW 822 (953)
Q Consensus 770 ~~~~~~l~~~---~~----------~~--------~-~~~~~~~~~k~sp--l~~~~n~~i~~l~e~G~~~~~~~~w 822 (953)
++. .+++.+ .+ .+ . ...++++.|+|-| +.+.+++++.++.+++.+++..+++
T Consensus 191 i~~-g~lr~Lav~~~~r~~~~pdvPt~~e~G~~~~~~~~w~gl~ap~g~p~~vv~~l~~al~~~~~~~~~~~~~~~~ 266 (301)
T 2qpq_A 191 IKA-GKLQALAVTSKERSALLPEVPTVAEQGVAGYELNQWHGLLVPGATPMAVRQKLYDGIAKVMQRDDVQKKLADL 266 (301)
T ss_dssp HHT-TSEEEEEECSSSCCTTCTTSCBSGGGTCTTCCCEEEEEEEEETTCCHHHHHHHHHHHHHHHTCHHHHHHHHHH
T ss_pred Hhc-CCeEEEEEcCCccccccCCCCChHHhCCCceEEEeEEEEEecCCCCHHHHHHHHHHHHHHHcCHHHHHHHHHC
Confidence 443 334333 11 01 0 1236788999966 9999999999999999888777666
No 145
>3huu_A Transcription regulator like protein; PSI-II, NYSGXRC, LAC I, STR genomics, protein structure initiative; 1.95A {Staphylococcus haemolyticus}
Probab=97.53 E-value=0.002 Score=68.79 Aligned_cols=206 Identities=10% Similarity=0.045 Sum_probs=130.0
Q ss_pred CceEEEeEEEec------CCCchhHHHHHHHHHHHHHhcCCCCCCCcEEEEEEecCCCChHHHHHHHHHHHhcCcEEEEc
Q 002211 47 PEVLNVGAIFSF------GTVNGQVSRIAMKAAQDDINSDPRVLGGRKLSITMHDAKFNGFLSIMGALQFMETDTLAIVG 120 (953)
Q Consensus 47 ~~~i~IG~l~~~------~~~~g~~~~~a~~lAve~iN~~g~il~g~~l~l~~~D~~~~~~~a~~~a~~li~~~v~aiiG 120 (953)
...-+||++.|. +..+-.....+++-+.++. |+++. +.++..++..-......+.++++.+||-
T Consensus 20 ~~~~~Igvi~~~~~~~~~~~~~~~~~~~gi~~~a~~~--------g~~~~--~~~~~~~~~~~~~~~~~l~~~~vdgiIi 89 (305)
T 3huu_A 20 NKTLTIGLIQKSSAPEIRQNPFNSDVLNGINQACNVR--------GYSTR--MTVSENSGDLYHEVKTMIQSKSVDGFIL 89 (305)
T ss_dssp -CCCEEEEECSCCSHHHHTSHHHHHHHHHHHHHHHHH--------TCEEE--ECCCSSHHHHHHHHHHHHHTTCCSEEEE
T ss_pred CCCCEEEEEeCCCccccccCcHHHHHHHHHHHHHHHC--------CCEEE--EEeCCCChHHHHHHHHHHHhCCCCEEEE
Confidence 446789999996 3344456667777776663 45554 4666666666566666677778888773
Q ss_pred -cCChhhHHHHHHhhhhCCCcEEEeecCCCCCCCCCCCcEEEccCChHHHHHHHHHHHHHcCCcEEEEEEecCc--cccc
Q 002211 121 -PQSAVMAHVLSHLANELQVPLLSFTALDPTLSPLQYPFFVQTAPNDLYLMSAIAEMVSYFGWGEVIAIFNDDD--QGRN 197 (953)
Q Consensus 121 -p~~S~~a~av~~v~~~~~vP~Is~~at~~~ls~~~~p~~fr~~p~d~~~~~ai~~~l~~~~w~~vaii~~d~~--~g~~ 197 (953)
|..... .....+...++|+|...... ... .+-.+..++..-+..+++++...|-+++++|..+.. ....
T Consensus 90 ~~~~~~~--~~~~~l~~~~iPvV~i~~~~---~~~---~~~~V~~D~~~~g~~a~~~L~~~G~~~I~~i~~~~~~~~~~~ 161 (305)
T 3huu_A 90 LYSLKDD--PIEHLLNEFKVPYLIVGKSL---NYE---NIIHIDNDNIDAAYQLTQYLYHLGHRHILFLQESGHYAVTED 161 (305)
T ss_dssp SSCBTTC--HHHHHHHHTTCCEEEESCCC---SST---TCCEEECCHHHHHHHHHHHHHHTTCCSEEEEEESSCBHHHHH
T ss_pred eCCcCCc--HHHHHHHHcCCCEEEECCCC---ccc---CCcEEEeCHHHHHHHHHHHHHHCCCCeEEEEcCCcccchhHH
Confidence 322222 34556677899999875432 112 223455677777888899998899999999986543 3455
Q ss_pred hHHHHHHHHHhcCcEEEEEEecCCCCCCChHHHHHHHHHH-hc--CCceEEEEEcchhhHHHHHHHHHHcCCCCCceE-E
Q 002211 198 GVTALGDKLAEIRCKISYKSALPPDQSVTETDVRNELVKV-RM--MEARVIVVHGYSRTGLMVFDVAQRLGMMDSGYV-W 273 (953)
Q Consensus 198 ~~~~l~~~l~~~g~~v~~~~~~~~~~~~~~~d~~~~l~~i-~~--~~~~vii~~~~~~~~~~~~~~a~~~g~~~~~~~-w 273 (953)
..+.|.+++++.|+.+.. .+... .+.-...+.++ .+ .++++|+. .+...+..+++++++.|+..++-+ .
T Consensus 162 R~~Gf~~~l~~~g~~~~~--~~~~~----~~~~~~~~~~~~l~~~~~~~ai~~-~nd~~A~g~~~al~~~g~~vP~di~v 234 (305)
T 3huu_A 162 RSVGFKQYCDDVKISNDC--VVIKS----MNDLRDFIKQYCIDASHMPSVIIT-SDVMLNMQLLNVLYEYQLRIPEDIQT 234 (305)
T ss_dssp HHHHHHHHHHHTTCCCCE--EEECS----HHHHHHHC--------CCCSEEEE-SSHHHHHHHHHHHHHTTCCTTTTCEE
T ss_pred HHHHHHHHHHHcCCCccc--EEecC----cHHHHHHHHHhhhcCCCCCCEEEE-CChHHHHHHHHHHHHcCCCCCcceEE
Confidence 688999999999976543 12211 11133344444 32 46777664 566678889999999998755433 4
Q ss_pred EEeC
Q 002211 274 IATT 277 (953)
Q Consensus 274 i~~~ 277 (953)
++.|
T Consensus 235 ig~D 238 (305)
T 3huu_A 235 ATFN 238 (305)
T ss_dssp EEES
T ss_pred EEEC
Confidence 4433
No 146
>2fqx_A Membrane lipoprotein TMPC; ABC transport system, ligand-binding protein, guanosine, TP0319, transport protein; HET: GMP; 1.70A {Treponema pallidum} PDB: 2fqw_A* 2fqy_A*
Probab=97.52 E-value=0.008 Score=64.44 Aligned_cols=207 Identities=12% Similarity=0.001 Sum_probs=119.4
Q ss_pred ceEEEeEEEe---cCC-CchhHHHHHHHHHHHHHhcCCCCCCCcEEEEEEecCCCChHHHHHHHHHHHhcCcEEEEccCC
Q 002211 48 EVLNVGAIFS---FGT-VNGQVSRIAMKAAQDDINSDPRVLGGRKLSITMHDAKFNGFLSIMGALQFMETDTLAIVGPQS 123 (953)
Q Consensus 48 ~~i~IG~l~~---~~~-~~g~~~~~a~~lAve~iN~~g~il~g~~l~l~~~D~~~~~~~a~~~a~~li~~~v~aiiGp~~ 123 (953)
++.+||+++| ++. .+-.....|++-+.++. |+++.+. ++..+. ...+....++++++.+||....
T Consensus 3 ~~~~Ig~v~~~g~~~d~~f~~~~~~Gi~~~~~~~--------g~~~~~~--~~~~~~-~~~~~l~~l~~~~~dgIi~~~~ 71 (318)
T 2fqx_A 3 GDFVVGMVTDSGDIDDKSFNQQVWEGISRFAQEN--------NAKCKYV--TASTDA-EYVPSLSAFADENMGLVVACGS 71 (318)
T ss_dssp CCCEEEEEESSSCTTSSSHHHHHHHHHHHHHHHT--------TCEEEEE--ECCSGG-GHHHHHHHHHHTTCSEEEEEST
T ss_pred CCcEEEEEEcCCCCCCccHHHHHHHHHHHHHHHh--------CCeEEEE--eCCCHH-HHHHHHHHHHHcCCCEEEECCh
Confidence 4578999997 333 45556667777766663 4555543 333222 2345566777888888886432
Q ss_pred hhhHHHHHHhhhhC-CCcEEEeecCCCCCCCCCCCcEEEccCChHHHHHHH----HHHHHHcCC-cEEEEEEec-Ccccc
Q 002211 124 AVMAHVLSHLANEL-QVPLLSFTALDPTLSPLQYPFFVQTAPNDLYLMSAI----AEMVSYFGW-GEVIAIFND-DDQGR 196 (953)
Q Consensus 124 S~~a~av~~v~~~~-~vP~Is~~at~~~ls~~~~p~~fr~~p~d~~~~~ai----~~~l~~~~w-~~vaii~~d-~~~g~ 196 (953)
. ...++..++..+ ++|++......+ . .+.+-.... |..++..+ +.++.+.|- ++|++|... .....
T Consensus 72 ~-~~~~~~~~a~~~p~~p~v~id~~~~---~--~~~~~~v~~-d~~~~~~lag~~a~~l~~~Gh~r~Ig~i~g~~~~~~~ 144 (318)
T 2fqx_A 72 F-LVEAVIETSARFPKQKFLVIDAVVQ---D--RDNVVSAVF-GQNEGSFLVGVAAALKAKEAGKSAVGFIVGMELGMMP 144 (318)
T ss_dssp T-THHHHHHHHHHCTTSCEEEESSCCC---S--CTTEEEEEE-CHHHHHHHHHHHHHHHHHHTTCCEEEEEESCCSTTTH
T ss_pred h-HHHHHHHHHHHCCCCEEEEEcCccC---C--CCCEEEEEe-chHHHHHHHHHHHHHHhccCCCcEEEEEeCcccHHHH
Confidence 2 122355566554 899987654221 0 122222222 34444444 466777786 899999753 23345
Q ss_pred chHHHHHHHHHhcCcEEEEEEecCCCCCCChHHHHHHHHHHhcCCceEEEEEcchhhHHHHHHHHHHcCCCCCceEEEE
Q 002211 197 NGVTALGDKLAEIRCKISYKSALPPDQSVTETDVRNELVKVRMMEARVIVVHGYSRTGLMVFDVAQRLGMMDSGYVWIA 275 (953)
Q Consensus 197 ~~~~~l~~~l~~~g~~v~~~~~~~~~~~~~~~d~~~~l~~i~~~~~~vii~~~~~~~~~~~~~~a~~~g~~~~~~~wi~ 275 (953)
.....|.+.+++.|..+.....+... -.+...-.....++.+.++|+|+... ...+..++++++++|+. ++-+++.
T Consensus 145 ~r~~Gf~~~~~~~~~~~~~~~~~~~~-~~~~~~g~~~a~~ll~~~~daI~~~~-d~~a~Gv~~a~~e~g~~-P~dv~vi 220 (318)
T 2fqx_A 145 LFEAGFEAGVKAVDPDIQVVVEVANT-FSDPQKGQALAAKLYDSGVNVIFQVA-GGTGNGVIKEARDRRLN-GQDVWVI 220 (318)
T ss_dssp HHHHHHHHHHHHHCTTCEEEEEECSC-SSCHHHHHHHHHHHHHTTCCEEEEEC-GGGHHHHHHHHHHHHHT-TCCCEEE
T ss_pred HHHHHHHHHHHHHCCCCEEEEEEccC-ccCHHHHHHHHHHHHHCCCcEEEECC-CCCchHHHHHHHhhhhc-cCCcEEE
Confidence 56788999999887643222222211 01123334445566566899877554 44577788999998887 4444444
No 147
>2dvz_A BUGE, putative exported protein; periplamsic binding proteins, carboxylate binding, glutamate, transport protein; HET: GLU; 2.30A {Bordetella pertussis}
Probab=97.51 E-value=0.00075 Score=71.88 Aligned_cols=121 Identities=10% Similarity=0.105 Sum_probs=83.0
Q ss_pred CCCCChHHhhh------CCCeEEEE-eCchHH---HHHHHhhCCCccceEeCCCHHHHHHHHHcCCcEEEEccchhHHHH
Q 002211 700 SPIKGIDTLMT------SNDRVGYQ-VGSFAE---NYLIEELSIPKSRLVALGSPEEYAIALENRTVAAVVDERPYIDLF 769 (953)
Q Consensus 700 ~~I~sl~dL~~------~~~~ig~~-~~s~~~---~~l~~~~~~~~~~~~~~~~~~~~~~~l~~g~~~a~~~~~~~~~~~ 769 (953)
.+++|++||++ ....+|.. .|+... ..+.+..+.. ...++|....+.+.+|..|++|+.+........+
T Consensus 125 s~~~tl~dL~~~ak~~p~~~~~g~~g~Gs~~hl~~~~l~~~~Gi~-~~~Vpy~G~~~a~~al~~G~vD~~~~~~~~~~~~ 203 (314)
T 2dvz_A 125 FPAKDFKGFLEELKKNPGKYSYGSSGTCGVLHLMGESFKMATGTD-IVHVPYKGSGPAVADAVGGQIELIFDNLPSSMPQ 203 (314)
T ss_dssp SSCSSHHHHHHHHHTSTTTCEEEESCTTSHHHHHHHHHHHHHTCC-CEEEECSSHHHHHHHHHHTSSSEEEEEHHHHHHH
T ss_pred CCCCCHHHHHHHHHhCCCcEEEeCCCCCcHHHHHHHHHHHHhCCC-eEEcccCCHHHHHHHHHcCCceEEEEcHHHHHHH
Confidence 47899999975 23467766 355322 3343455553 3457899999999999999999999887665544
Q ss_pred HhcCcceEEe---CC----------cc--------c-cCccEEEecCCCc--chHHHHHHHHhhhccccHHHHHHHh
Q 002211 770 LSDHCQFSVR---GQ----------EF--------T-KSGWGFAFPRDSP--LAIDMSTAILTLSENGELQRIHDKW 822 (953)
Q Consensus 770 ~~~~~~l~~~---~~----------~~--------~-~~~~~~~~~k~sp--l~~~~n~~i~~l~e~G~~~~~~~~w 822 (953)
++. ++++.+ ++ .+ . ...++++.|+|-| ..+.+++++.++.+++.+++..+++
T Consensus 204 i~~-g~lr~Lav~~~~r~~~~pdvPt~~e~G~~~~~~~~w~gl~ap~g~p~~vv~~l~~al~~~~~~p~~~~~~~~~ 279 (314)
T 2dvz_A 204 IQA-GKLRAMAIAWPTRIDAIKDVPTFADAGFPVLNQPVWYGLLAPKGTPMDVVNKLRDAAVVALKDPKVIKALDDQ 279 (314)
T ss_dssp HHT-TSSEEEEEESSSCCGGGTTSCBTTTTTCGGGCCCEEEEEEEETTCCHHHHHHHHHHHHHHHTCHHHHHHHHHH
T ss_pred HHc-CCEEEEEecCccccccCCCCCCHHhcCCCceEEeEEEEEEEcCCCCHHHHHHHHHHHHHHHcCHHHHHHHHHC
Confidence 443 222222 11 01 0 1136788999976 9999999999999999888776665
No 148
>3qsl_A Putative exported protein; unknown, structural genomics, PSI-biology, midwest center FO structural genomics, MCSG, unknown function; HET: MSE CIT; 2.00A {Bordetella bronchiseptica}
Probab=97.44 E-value=0.00067 Score=73.87 Aligned_cols=137 Identities=13% Similarity=0.157 Sum_probs=96.1
Q ss_pred HHhCCCcccEEEeeCCCCCCCCChHHHHHHHHcCceeEEEecEEEe----cCccceeeccccceecceEEEEecccCCcC
Q 002211 522 VRLLPYAVPYKFIPYGDGHKNPTYSELINQITTGVFDAAVGDIAIV----TNRTKAVDFTQPYIESGLVVVAPVRKLNSS 597 (953)
Q Consensus 522 a~~l~~~~~~~~~~~~~~~~n~~~~~~i~~l~~g~~Di~~~~~~~t----~~r~~~vdft~p~~~~~~~~~v~~~~~~~~ 597 (953)
.++.|+++++ +++ +++.+++..|.+|++|+++++.... .++.....+..++...+..+++++..
T Consensus 59 ~~~~g~~v~~--~~~------~~~~~~~~~l~~G~~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~---- 126 (346)
T 3qsl_A 59 FKDEGLDVSI--ADF------AGGSKALQAVVGGSADVVSGAFEHTLSLQAKGQFYRAFALQGRAPMIGVGVSKKN---- 126 (346)
T ss_dssp HHHTTCEEEE--EEC------SSHHHHHHHHHTTSCSEEEEETHHHHHHHHTTCCEEEEEESBSSCCEEEEEETTT----
T ss_pred hHhhCCeEEE--Eec------CChHHHHHHHHCCCCCEEccchHHHHHHHhCCCCeEEEEecccCCCcEEEEecCc----
Confidence 3567866544 442 5689999999999999987754433 35555666666666666677766543
Q ss_pred cceeeccCchhHHHHHHHHHHHHHHHhhhhhcccCCCCCCCCcccchhhHHHHHHHhhccccCCcccchhHHHHHHHHHH
Q 002211 598 AWAFLRPFTPLMWAVTGVFFLVVGTVVWILEHRLNDEFRGPPRKQIVTVLWFSFSTMFFAHRENTVSTLGRVVLIIWLFV 677 (953)
Q Consensus 598 ~~~~l~PF~~~vW~~i~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~s~~~R~l~~~w~~~ 677 (953)
T Consensus 127 -------------------------------------------------------------------------------- 126 (346)
T 3qsl_A 127 -------------------------------------------------------------------------------- 126 (346)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HHHhhhhcccceeeeeeeccccCCCCChHHhhhCCCeEEEE-eCchHHHHHH---HhhCCCc--cceEeCCCHHHHHHHH
Q 002211 678 VLIITSSYTASLTSILTVQQLSSPIKGIDTLMTSNDRVGYQ-VGSFAENYLI---EELSIPK--SRLVALGSPEEYAIAL 751 (953)
Q Consensus 678 ~lil~~~Yta~L~s~Lt~~~~~~~I~sl~dL~~~~~~ig~~-~~s~~~~~l~---~~~~~~~--~~~~~~~~~~~~~~~l 751 (953)
.++|++++||. |++|++. .|+....++. +..+... .+++.+....+...+|
T Consensus 127 ---------------------~~~i~s~~DL~--Gk~i~~~~~gs~~~~~~~~~l~~~G~~~~~v~~~~~~~~~~~~~al 183 (346)
T 3qsl_A 127 ---------------------LPGYKGPADLK--GRKIGVTAPGSSTNMVVNFFLAKHGLKASDVSFIGVGAGAGAVTAL 183 (346)
T ss_dssp ---------------------CTTCCSGGGGT--TCEEEESSTTSHHHHHHHHHHHHTTCCGGGSEEEECCSSHHHHHHH
T ss_pred ---------------------ccCCCChHHcC--CCEEEECCCCcHHHHHHHHHHHHcCCCHHHeEEEecCCcHHHHHHH
Confidence 14799999996 8999998 5765433332 3444442 3556777888999999
Q ss_pred HcCCcEEEEccchhHHHHHhcC
Q 002211 752 ENRTVAAVVDERPYIDLFLSDH 773 (953)
Q Consensus 752 ~~g~~~a~~~~~~~~~~~~~~~ 773 (953)
.+|++|+++...++......+.
T Consensus 184 ~~G~vDa~~~~~p~~~~~~~~g 205 (346)
T 3qsl_A 184 RSGQIDAISNTDPVVSMLETSG 205 (346)
T ss_dssp HHTSCSEEEEETTHHHHHHHTT
T ss_pred HcCCccEEEecchhHHHHHhCC
Confidence 9999999999888876655443
No 149
>4fe7_A Xylose operon regulatory protein; HTH_ARAC, helix-turn-helix, PBP, periplasmic binding protein binding transcription regulator, DNA xylose; HET: XYS; 2.90A {Escherichia coli} PDB: 4fe4_A
Probab=97.42 E-value=0.0039 Score=69.69 Aligned_cols=212 Identities=9% Similarity=0.019 Sum_probs=129.7
Q ss_pred CCCceEEEeEEEecCCCchhHHHHHHHHHHHHHhcCCCCCCCcEEEEEEecCCCChHHHHHHHHHHHhcCcEEEEccCCh
Q 002211 45 LKPEVLNVGAIFSFGTVNGQVSRIAMKAAQDDINSDPRVLGGRKLSITMHDAKFNGFLSIMGALQFMETDTLAIVGPQSA 124 (953)
Q Consensus 45 ~~~~~i~IG~l~~~~~~~g~~~~~a~~lAve~iN~~g~il~g~~l~l~~~D~~~~~~~a~~~a~~li~~~v~aiiGp~~S 124 (953)
.....-+||+++|.+..+-.....|++-+.++. |+.+.+...++.. .....+.+++|++||-...
T Consensus 21 ~~~~s~~Igvv~~~~~~f~~~l~~gi~~~a~~~--------g~~~~i~~~~~~~------~~i~~l~~~~vDGiIi~~~- 85 (412)
T 4fe7_A 21 MFTKRHRITLLFNANKAYDRQVVEGVGEYLQAS--------QSEWDIFIEEDFR------ARIDKIKDWLGDGVIADFD- 85 (412)
T ss_dssp CCCCCEEEEEECCTTSHHHHHHHHHHHHHHHHH--------TCCEEEEECC-CC--------------CCCSEEEEETT-
T ss_pred CCCCCceEEEEeCCcchhhHHHHHHHHHHHHhc--------CCCeEEEecCCcc------chhhhHhcCCCCEEEEecC-
Confidence 345678999999976666667778888777764 4556655443321 1244566678888885322
Q ss_pred hhHHHHHHhhhhCCCcEEEeecCCCCCCCCCCCcEEEccCChHHHHHHHHHHHHHcCCcEEEEEEecCcc----ccchHH
Q 002211 125 VMAHVLSHLANELQVPLLSFTALDPTLSPLQYPFFVQTAPNDLYLMSAIAEMVSYFGWGEVIAIFNDDDQ----GRNGVT 200 (953)
Q Consensus 125 ~~a~av~~v~~~~~vP~Is~~at~~~ls~~~~p~~fr~~p~d~~~~~ai~~~l~~~~w~~vaii~~d~~~----g~~~~~ 200 (953)
.......+...++|+|......+... ..+.+-.+..++..-+..+++++...|-+++++|...... .....+
T Consensus 86 --~~~~~~~l~~~~iPvV~i~~~~~~~~--~~~~~~~V~~D~~~~g~~a~~~L~~~G~r~I~~i~~~~~~~~~~~~~R~~ 161 (412)
T 4fe7_A 86 --DKQIEQALADVDVPIVGVGGSYHLAE--SYPPVHYIATDNYALVESAFLHLKEKGVNRFAFYGLPESSGKRWATEREY 161 (412)
T ss_dssp --CHHHHHHHTTCCSCEEEEEECCSSGG--GSCSSEEEEECHHHHHHHHHHHHHHTTCCEEEEECCCTTSCCHHHHHHHH
T ss_pred --ChHHHHHHhhCCCCEEEecCCccccc--cCCCCCEEEeCHHHHHHHHHHHHHHcCCceEEEecccccccccHHHHHHH
Confidence 23345667778999998765433211 1123445566777788888999999999999999865432 456788
Q ss_pred HHHHHHHhcCcEEEEEEecCCCCCCChHHHHHHHHHHhc--CCceEEEEEcchhhHHHHHHHHHHcCCCCCceE-EEEeC
Q 002211 201 ALGDKLAEIRCKISYKSALPPDQSVTETDVRNELVKVRM--MEARVIVVHGYSRTGLMVFDVAQRLGMMDSGYV-WIATT 277 (953)
Q Consensus 201 ~l~~~l~~~g~~v~~~~~~~~~~~~~~~d~~~~l~~i~~--~~~~vii~~~~~~~~~~~~~~a~~~g~~~~~~~-wi~~~ 277 (953)
.+.+++++.|+........... ..+..+....+.++.+ .++++|+. .+...+..+++++++.|+..++-+ .++-|
T Consensus 162 Gf~~al~~~g~~~~~~~~~~~~-~~~~~~~~~~~~~~l~~~~~~~aI~~-~nD~~A~g~~~al~~~G~~vP~disvig~D 239 (412)
T 4fe7_A 162 AFRQLVAEEKYRGVVYQGLETA-PENWQHAQNRLADWLQTLPPQTGIIA-VTDARARHILQVCEHLHIPVPEKLCVIGID 239 (412)
T ss_dssp HHHHHHTTSSSCCEEECCSCSS-CSSHHHHHHHHHHHHHHSCTTEEEEE-SSHHHHHHHHHHHHHHTCCTTTTSEEEESS
T ss_pred HHHHHHHHcCCCcccccccccc-ccchhhHHHHHHHHHHhCCCCeEEEE-EecHHHHHHHHHHHHcCCCCCceEEEEeec
Confidence 9999999998764322111111 0122233344444432 46777664 456677889999999998765444 44444
No 150
>3hs3_A Ribose operon repressor; PSI-II, NYSGXRC, periplasmic binding protein, structural genomics, protein structure initiative; 1.60A {Lactobacillus acidophilus}
Probab=97.42 E-value=0.0024 Score=67.00 Aligned_cols=199 Identities=9% Similarity=-0.003 Sum_probs=133.0
Q ss_pred CCceEEEeEEEecC-CCchhHHHHHHHHHHHHHhcCCCCCCCcEEEEEEecCCCChHHHHHHHHHHHhcCcEEEEccCCh
Q 002211 46 KPEVLNVGAIFSFG-TVNGQVSRIAMKAAQDDINSDPRVLGGRKLSITMHDAKFNGFLSIMGALQFMETDTLAIVGPQSA 124 (953)
Q Consensus 46 ~~~~i~IG~l~~~~-~~~g~~~~~a~~lAve~iN~~g~il~g~~l~l~~~D~~~~~~~a~~~a~~li~~~v~aiiGp~~S 124 (953)
....-+||++.|-. ..+-.....+++-+.++. |+++ +.+.++..++..-.+....++++++.+||-..
T Consensus 7 ~~~~~~Igvi~~~~~~~~~~~~~~gi~~~a~~~--------g~~~-~~~~~~~~~~~~~~~~~~~l~~~~vdgiIi~~-- 75 (277)
T 3hs3_A 7 QKKSKMIGIIIPDLNNRFYAQIIDGIQEVIQKE--------GYTA-LISFSTNSDVKKYQNAIINFENNNVDGIITSA-- 75 (277)
T ss_dssp -CCCCEEEEEESCTTSHHHHHHHHHHHHHHHHT--------TCEE-EEEECSSCCHHHHHHHHHHHHHTTCSEEEEEC--
T ss_pred cCCCCEEEEEeCCCCChhHHHHHHHHHHHHHHC--------CCCE-EEEEeCCCChHHHHHHHHHHHhCCCCEEEEcc--
Confidence 34567899999864 444455667777666652 5551 33567777888777777888888888877432
Q ss_pred hhHHHHHHhhhhCCCcEEEeecC-CCCCCCCCCCcEEEccCChHHHHHHHHHHHHHcCCcEEEEEEec--CccccchHHH
Q 002211 125 VMAHVLSHLANELQVPLLSFTAL-DPTLSPLQYPFFVQTAPNDLYLMSAIAEMVSYFGWGEVIAIFND--DDQGRNGVTA 201 (953)
Q Consensus 125 ~~a~av~~v~~~~~vP~Is~~at-~~~ls~~~~p~~fr~~p~d~~~~~ai~~~l~~~~w~~vaii~~d--~~~g~~~~~~ 201 (953)
.....+...++|+|..... .+ + +.+ .+..++...+..+++++. .|-++++++... ........+.
T Consensus 76 ----~~~~~~~~~~iPvV~~~~~~~~---~---~~~-~V~~D~~~~g~~a~~~L~-~G~~~I~~i~~~~~~~~~~~R~~G 143 (277)
T 3hs3_A 76 ----FTIPPNFHLNTPLVMYDSANIN---D---DIV-RIVSNNTKGGKESIKLLS-KKIEKVLIQHWPLSLPTIRERIEA 143 (277)
T ss_dssp ----CCCCTTCCCSSCEEEESCCCCC---S---SSE-EEEECHHHHHHHHHHTSC-TTCCEEEEEESCTTSHHHHHHHHH
T ss_pred ----hHHHHHHhCCCCEEEEcccccC---C---CCE-EEEEChHHHHHHHHHHHH-hCCCEEEEEeCCCcCccHHHHHHH
Confidence 1123356679999987544 22 1 223 666777777888888887 999999999854 3345566789
Q ss_pred HHHHHHhcCcEEEEEEecCCCCCCChHHHHHHHHHHhc--CCceEEEEEcchhhHHHHHHHHHHcCCCCCceEEEE
Q 002211 202 LGDKLAEIRCKISYKSALPPDQSVTETDVRNELVKVRM--MEARVIVVHGYSRTGLMVFDVAQRLGMMDSGYVWIA 275 (953)
Q Consensus 202 l~~~l~~~g~~v~~~~~~~~~~~~~~~d~~~~l~~i~~--~~~~vii~~~~~~~~~~~~~~a~~~g~~~~~~~wi~ 275 (953)
|.+++++.|+.+... .+... .+ ...+.++.+ .++++|+. .+...+..+++++++.|+..++-+-+.
T Consensus 144 f~~~l~~~g~~~~~~-~~~~~----~~--~~~~~~~l~~~~~~~ai~~-~~d~~A~g~~~al~~~g~~vP~di~vi 211 (277)
T 3hs3_A 144 MTAEASKLKIDYLLE-ETPEN----NP--YISAQSALNKSNQFDAIIT-VNDLYAAEIIKEAKRRNLKIPDDFQLV 211 (277)
T ss_dssp HHHHHHHTTCEEEEE-ECCSS----CH--HHHHHHHHHTGGGCSEEEC-SSHHHHHHHHHHHHHTTCCTTTTCEEE
T ss_pred HHHHHHHCCCCCCCC-CccCC----ch--HHHHHHHHcCCCCCCEEEE-CCHHHHHHHHHHHHHcCCCCCCceEEE
Confidence 999999999987655 33322 11 344444443 35677654 455677889999999998765444443
No 151
>1jye_A Lactose operon repressor; gene regulation, protein stability, protein DNA-binding, transcription; 1.70A {Escherichia coli} SCOP: c.93.1.1 PDB: 1lbi_A 1lbg_A* 1lbh_A 1jyf_A 3edc_A 1efa_A* 1jwl_A* 2pe5_A* 1tlf_A* 2p9h_A* 2paf_A* 1cjg_A* 1l1m_A 1osl_A 2kei_A* 2kej_A* 2kek_A* 2bjc_A 1lqc_A 1lcc_A* ...
Probab=97.36 E-value=0.0082 Score=65.32 Aligned_cols=205 Identities=10% Similarity=-0.001 Sum_probs=121.0
Q ss_pred CceEEEeEEEecC-CCchhHHHHHHHHHHHHHhcCCCCCCCcEEEEEEecCCC-ChHHHHHHHHHHHhcCcEEEE--ccC
Q 002211 47 PEVLNVGAIFSFG-TVNGQVSRIAMKAAQDDINSDPRVLGGRKLSITMHDAKF-NGFLSIMGALQFMETDTLAIV--GPQ 122 (953)
Q Consensus 47 ~~~i~IG~l~~~~-~~~g~~~~~a~~lAve~iN~~g~il~g~~l~l~~~D~~~-~~~~a~~~a~~li~~~v~aii--Gp~ 122 (953)
....+||++.|.- ..+-.....+++-+.++ .|+++.+. ++.. ++..-......++.+++.+|| +|.
T Consensus 59 ~~~~~Igvi~~~~~~~~~~~~~~gi~~~a~~--------~g~~~~~~--~~~~~~~~~~~~~l~~l~~~~vdGiIi~~~~ 128 (349)
T 1jye_A 59 KQSLLIGVATSSLALHAPSQIVAAILSRADQ--------LGASVVVS--MVERSGVEACKTAVHNLLAQRVSGLIINYPL 128 (349)
T ss_dssp ---CEEEEEESCTTSHHHHHHHHHHHHHHHH--------TTCEEEEE--ECCSSSHHHHHHHHHHHHTTTCSCEEEESCC
T ss_pred CCCCEEEEEeCCCCcccHHHHHHHHHHHHHH--------cCCEEEEE--eCCCCcHHHHHHHHHHHHHCCCCEEEEecCC
Confidence 3467899999853 33334455666666554 25666653 4433 344444556667777777766 454
Q ss_pred ChhhHHHHHHhhhhCCCcEEEeecCCCCCCCCCCCcEEEccCChHHHHHHHHHHHHHcCCcEEEEEEecCc--cccchHH
Q 002211 123 SAVMAHVLSHLANELQVPLLSFTALDPTLSPLQYPFFVQTAPNDLYLMSAIAEMVSYFGWGEVIAIFNDDD--QGRNGVT 200 (953)
Q Consensus 123 ~S~~a~av~~v~~~~~vP~Is~~at~~~ls~~~~p~~fr~~p~d~~~~~ai~~~l~~~~w~~vaii~~d~~--~g~~~~~ 200 (953)
.... .+...+...++|+|...... ....++ +..++..-+..+++++...|.+++++|..+.. ......+
T Consensus 129 ~~~~--~~~~~~~~~~iPvV~i~~~~----~~~~~~---V~~d~~~~~~~a~~~L~~~G~~~I~~i~g~~~~~~~~~R~~ 199 (349)
T 1jye_A 129 DDQD--AIAVEAACTNVPALFLDVSD----QTPINS---IIFSHEDGTRLGVEHLVALGHQQIALLAGPLSSVSARLRLA 199 (349)
T ss_dssp CHHH--HHHHHHHTTTSCEEESSSCT----TSSSCE---EEECHHHHHHHHHHHHHHHTCCSEEEEECCTTSHHHHHHHH
T ss_pred CChh--HHHHHHhhCCCCEEEEcccC----CCCCCE---EEEchHHHHHHHHHHHHHCCCCEEEEEeCCCCCccHHHHHH
Confidence 4322 22333456789999875321 112332 34556666777788888889999999986432 3445678
Q ss_pred HHHHHHHhcCcEEEEEEecCCCCCCChHHHHHHHHHHhcC--CceEEEEEcchhhHHHHHHHHHHcCCCCCceEEEE
Q 002211 201 ALGDKLAEIRCKISYKSALPPDQSVTETDVRNELVKVRMM--EARVIVVHGYSRTGLMVFDVAQRLGMMDSGYVWIA 275 (953)
Q Consensus 201 ~l~~~l~~~g~~v~~~~~~~~~~~~~~~d~~~~l~~i~~~--~~~vii~~~~~~~~~~~~~~a~~~g~~~~~~~wi~ 275 (953)
.|.+++++.|+.+.... ..+ .+..+-...+.++.+. .+++|+. .+...+..+++++++.|+..++-+-+.
T Consensus 200 Gf~~al~~~gi~~~~~~--~~~--~~~~~~~~~~~~ll~~~~~~~ai~~-~nD~~A~g~~~al~~~G~~vP~disvv 271 (349)
T 1jye_A 200 GWHKYLTRNQIQPIAER--EGD--WSAMSGFQQTMQMLNEGIVPTAMLV-ANDQMALGAMRAITESGLRVGADISVV 271 (349)
T ss_dssp HHHHHHHHTTCCCSEEE--ECC--SSHHHHHHHHHHHHHTTCCCSEEEE-SSHHHHHHHHHHHHHTTCCBTTTBEEE
T ss_pred HHHHHHHHcCCCccccc--cCC--CChHHHHHHHHHHHhCCCCCCEEEE-CChHHHHHHHHHHHHcCCCCCCcEEEE
Confidence 89999999987543221 111 1133333344444333 4777664 455668889999999998765444443
No 152
>3jvd_A Transcriptional regulators; structural genomics, PSI-2, sugar binding protein, transcrip regulation, protein structure initiative; 2.30A {Corynebacterium glutamicum}
Probab=97.34 E-value=0.0058 Score=66.05 Aligned_cols=196 Identities=11% Similarity=0.035 Sum_probs=127.4
Q ss_pred CceEEEeEEEecC-CCchhHHHHHHHHHHHHHhcCCCCCCCcEEEEEEecCCCChHHHHHHHHHHHhcCcEEEEccCChh
Q 002211 47 PEVLNVGAIFSFG-TVNGQVSRIAMKAAQDDINSDPRVLGGRKLSITMHDAKFNGFLSIMGALQFMETDTLAIVGPQSAV 125 (953)
Q Consensus 47 ~~~i~IG~l~~~~-~~~g~~~~~a~~lAve~iN~~g~il~g~~l~l~~~D~~~~~~~a~~~a~~li~~~v~aiiGp~~S~ 125 (953)
...-+||++.|-. ..+-.....+++-+.++. |+.+.+. ++.. +..-......++.+++.+||-...
T Consensus 62 ~~~~~Igvi~~~~~~~~~~~~~~gi~~~a~~~--------g~~~~~~--~~~~-~~~~~~~~~~l~~~~vdGiIi~~~-- 128 (333)
T 3jvd_A 62 HRSALVGVIVPDLSNEYYSESLQTIQQDLKAA--------GYQMLVA--EANS-VQAQDVVMESLISIQAAGIIHVPV-- 128 (333)
T ss_dssp --CCEEEEEESCSSSHHHHHHHHHHHHHHHHH--------TCEEEEE--ECCS-HHHHHHHHHHHHHHTCSEEEECCC--
T ss_pred CCCCEEEEEeCCCcChHHHHHHHHHHHHHHHC--------CCEEEEE--CCCC-hHHHHHHHHHHHhCCCCEEEEcch--
Confidence 3467899999863 444556677777777764 5666654 4444 566666667777888888885333
Q ss_pred hHHHHHHhhhhCCCcEEEeecCCCCCCCCCCCcEEEccCChHHHHHHHHHHHHHcCCcEEEEEEecCc--cccchHHHHH
Q 002211 126 MAHVLSHLANELQVPLLSFTALDPTLSPLQYPFFVQTAPNDLYLMSAIAEMVSYFGWGEVIAIFNDDD--QGRNGVTALG 203 (953)
Q Consensus 126 ~a~av~~v~~~~~vP~Is~~at~~~ls~~~~p~~fr~~p~d~~~~~ai~~~l~~~~w~~vaii~~d~~--~g~~~~~~l~ 203 (953)
...+...++|+|......+. ...+ .+..++...+..+++++...|-+++++|..... ......+.|.
T Consensus 129 -----~~~~~~~~iPvV~~~~~~~~---~~~~---~V~~D~~~~~~~a~~~L~~~G~~~I~~i~~~~~~~~~~~R~~Gf~ 197 (333)
T 3jvd_A 129 -----VGSIAPEGIPMVQLTRGELG---PGFP---RVLCDDEAGFFQLTESVLGGSGMNIAALVGEESLSTTQERMRGIS 197 (333)
T ss_dssp -----TTCCC-CCSCEEEECC-------CCSC---EEEECHHHHHHHHHHHHCCSSSCEEEEEESCTTSHHHHHHHHHHH
T ss_pred -----HHHHhhCCCCEEEECccCCC---CCCC---EEEEChHHHHHHHHHHHHHCCCCeEEEEeCCCCCccHHHHHHHHH
Confidence 34456779999987554321 2223 345567777888888888899999999986533 3456688999
Q ss_pred HHHHhcCcEEEEEEecCCCCCCChHHHHHHHHHHhcCC-ceEEEEEcchhhHHHHHHHHHHcCCCCCceE
Q 002211 204 DKLAEIRCKISYKSALPPDQSVTETDVRNELVKVRMME-ARVIVVHGYSRTGLMVFDVAQRLGMMDSGYV 272 (953)
Q Consensus 204 ~~l~~~g~~v~~~~~~~~~~~~~~~d~~~~l~~i~~~~-~~vii~~~~~~~~~~~~~~a~~~g~~~~~~~ 272 (953)
+++++.|+.... ... . .+.++....+.++.+.. +++|+. .+...+..++++++++|+..++-+
T Consensus 198 ~al~~~g~~~~~--~~~-~--~~~~~~~~~~~~ll~~~~~~ai~~-~nd~~A~g~~~al~~~G~~vP~di 261 (333)
T 3jvd_A 198 HAASIYGAEVTF--HFG-H--YSVESGEEMAQVVFNNGLPDALIV-ASPRLMAGVMRAFTRLNVRVPHDV 261 (333)
T ss_dssp HHHHHTTCEEEE--EEC-C--SSHHHHHHHHHHHHHTCCCSEEEE-CCHHHHHHHHHHHHHTTCCTTTTC
T ss_pred HHHHHCCCCEEE--ecC-C--CCHHHHHHHHHHHhcCCCCcEEEE-CCHHHHHHHHHHHHHcCCCCCCce
Confidence 999999987221 111 1 12444455555555443 777764 455677789999999998755443
No 153
>3ix1_A N-formyl-4-amino-5-aminomethyl-2-methylpyrimidine protein; periplasmic N-formyl-4-amino-5-aminomethyl-2-methylpyrimidin protein; HET: NFM; 2.40A {Bacillus halodurans c-125}
Probab=97.33 E-value=0.00041 Score=74.08 Aligned_cols=78 Identities=8% Similarity=-0.038 Sum_probs=50.9
Q ss_pred ceEEEeeHHHHHHHHHhCCCcccEEEeeCCCCCCCCChHHHHHHHHcCceeEEEec-EEEec---Cccceeeccccceec
Q 002211 508 DIVHGYCIDVFLAAVRLLPYAVPYKFIPYGDGHKNPTYSELINQITTGVFDAAVGD-IAIVT---NRTKAVDFTQPYIES 583 (953)
Q Consensus 508 ~~~~G~~~dll~~la~~l~~~~~~~~~~~~~~~~n~~~~~~i~~l~~g~~Di~~~~-~~~t~---~r~~~vdft~p~~~~ 583 (953)
..+.|+.+.+-+-+.++.|+++ ++++. +....++..|.+|++|+++++ ..... +......+..++...
T Consensus 15 ~~~~~~~va~~~g~~~~~Gl~v--~~~~~------~~~~~~~~~l~~G~~D~~~~~~~~~~~~~~~g~~~~~~~~~~~~~ 86 (302)
T 3ix1_A 15 AVHTFLYVAIENGYFAEEGLDV--DIVFP------TNPTDPIQLTASGAIPLALSYQPDVILARSKDLPVVSVASVVRSP 86 (302)
T ss_dssp GGGHHHHHHHHTTHHHHTTEEE--EEECC------SSTTHHHHHHHHTSCSEEEECHHHHHHHHHTTCCEEEEEEEECSC
T ss_pred cccHHHHHHHHcChHHHcCCcE--EEecC------CCCchHHHHHHCCCCCEEecCHHHHHHHHHCCCCEEEEEEEeccC
Confidence 3446777777788888999664 44442 234589999999999999876 22222 333345555566566
Q ss_pred ceEEEEeccc
Q 002211 584 GLVVVAPVRK 593 (953)
Q Consensus 584 ~~~~~v~~~~ 593 (953)
+..+++++..
T Consensus 87 ~~~l~~~~~s 96 (302)
T 3ix1_A 87 LNHVMFLAEQ 96 (302)
T ss_dssp CEEEEEEGGG
T ss_pred CEEEEEECCC
Confidence 6777776544
No 154
>3s99_A Basic membrane lipoprotein; ssgcid, structural genomics, SEA structural genomics center for infectious disease, adenine; HET: ADE; 2.05A {Brucella melitensis biovar abortus}
Probab=97.32 E-value=0.014 Score=63.12 Aligned_cols=202 Identities=13% Similarity=0.035 Sum_probs=122.8
Q ss_pred CCCceEEEeEEEecC---CCchhHHHHHHHHHHHHHhcCCCCCCCcEEEEEEecCCCChHHHHHHHHHHHhcCcEEEEcc
Q 002211 45 LKPEVLNVGAIFSFG---TVNGQVSRIAMKAAQDDINSDPRVLGGRKLSITMHDAKFNGFLSIMGALQFMETDTLAIVGP 121 (953)
Q Consensus 45 ~~~~~i~IG~l~~~~---~~~g~~~~~a~~lAve~iN~~g~il~g~~l~l~~~D~~~~~~~a~~~a~~li~~~v~aiiGp 121 (953)
...++++||++++-. ..+-.....|++.+.++.+ -++++.+.++..+.....+..++++++++..||+.
T Consensus 22 ~~~~~~kIglv~~g~i~D~~f~~~~~~G~~~~~~~~G--------~~~~~~~~e~~~~~~d~~~~l~~l~~~g~d~Ii~~ 93 (356)
T 3s99_A 22 MAEEKLKVGFIYIGPPGDFGWTYQHDQARKELVEALG--------DKVETTFLENVAEGADAERSIKRIARAGNKLIFTT 93 (356)
T ss_dssp ----CEEEEEECSSCGGGSSHHHHHHHHHHHHHHHHT--------TTEEEEEECSCCTTHHHHHHHHHHHHTTCSEEEEC
T ss_pred ccCCCCEEEEEEccCCCchhHHHHHHHHHHHHHHHhC--------CceEEEEEecCCCHHHHHHHHHHHHHCCCCEEEEC
Confidence 456789999999732 3455666788887777763 23666677776666666778888999999999986
Q ss_pred CChhhHHHHHHhhhhC-CCcEEEeecCCCCCCCCCCCcEEEccCChHHHHHHHHHHHH-Hc-CCcEEEEEEec-Cccccc
Q 002211 122 QSAVMAHVLSHLANEL-QVPLLSFTALDPTLSPLQYPFFVQTAPNDLYLMSAIAEMVS-YF-GWGEVIAIFND-DDQGRN 197 (953)
Q Consensus 122 ~~S~~a~av~~v~~~~-~vP~Is~~at~~~ls~~~~p~~fr~~p~d~~~~~ai~~~l~-~~-~w~~vaii~~d-~~~g~~ 197 (953)
+.....++..++.++ ++|++-.....+ ...-..++|+ ..++.-++-.+. ++ +-++|++|... .+....
T Consensus 94 -g~~~~~~~~~vA~~~Pdv~fv~id~~~~--~~Nv~sv~~~-----~~eg~ylaG~~A~~~tk~~kIGfVgg~~~p~v~~ 165 (356)
T 3s99_A 94 -SFGYMDPTVKVAKKFPDVKFEHATGYKT--ADNMSAYNAR-----FYEGRYVQGVIAAKMSKKGIAGYIGSVPVPEVVQ 165 (356)
T ss_dssp -SGGGHHHHHHHHTTCTTSEEEEESCCCC--BTTEEEEEEC-----HHHHHHHHHHHHHHHCSSCEEEEEECCCCHHHHH
T ss_pred -CHHHHHHHHHHHHHCCCCEEEEEecccc--CCcEEEEEec-----hhHHHHHHHHHHHHhcCCCEEEEECCCccHHHHH
Confidence 445566778888876 788886533211 0111123343 344544444431 11 24789999853 333334
Q ss_pred hHHHHHHHHHhcCcEEEEEEecCCCCCCChHHHHHHHHHHhcCCceEEEEEcchhhHHHHHHHHHHcCC
Q 002211 198 GVTALGDKLAEIRCKISYKSALPPDQSVTETDVRNELVKVRMMEARVIVVHGYSRTGLMVFDVAQRLGM 266 (953)
Q Consensus 198 ~~~~l~~~l~~~g~~v~~~~~~~~~~~~~~~d~~~~l~~i~~~~~~vii~~~~~~~~~~~~~~a~~~g~ 266 (953)
....|.+.++..+..+.....+... -.+...-......+.+.++|+|+.+.... .++++|++.|.
T Consensus 166 ~~~GF~~G~k~~np~i~v~~~~~g~-~~d~~kg~~~a~~l~~~G~DvIf~~~d~~---Gv~~aa~e~Gv 230 (356)
T 3s99_A 166 GINSFMLGAQSVNPDFRVKVIWVNS-WFDPGKEADAAKALIDQGVDIITQHTDST---AAIQVAHDRGI 230 (356)
T ss_dssp HHHHHHHHHHTTCTTCEEEEEECSS-SCCHHHHHHHHHHHHHTTCSEEEESSSSS---HHHHHHHHTTC
T ss_pred HHHHHHHHHHHHCCCCEEEEEECCC-CCChHHHHHHHHHHHhCCCcEEEECCCch---HHHHHHHHcCC
Confidence 5778888888766543322222211 01233444556666678999988876654 57899998774
No 155
>2hqb_A Transcriptional activator of COMK gene; berkeley structure genomics center target 1957B, structural genomics, PSI; 2.70A {Bacillus halodurans}
Probab=97.22 E-value=0.043 Score=57.98 Aligned_cols=195 Identities=11% Similarity=0.012 Sum_probs=112.6
Q ss_pred ceEEEeEEEe--cCC-CchhHHHHHHHHHHHHHhcCCCCCCCcEEEEEEecCCCChHHHHHHHHHHHhcCcEEEEccCCh
Q 002211 48 EVLNVGAIFS--FGT-VNGQVSRIAMKAAQDDINSDPRVLGGRKLSITMHDAKFNGFLSIMGALQFMETDTLAIVGPQSA 124 (953)
Q Consensus 48 ~~i~IG~l~~--~~~-~~g~~~~~a~~lAve~iN~~g~il~g~~l~l~~~D~~~~~~~a~~~a~~li~~~v~aiiGp~~S 124 (953)
.+.+||+++| ++. .+-.....|++-+.++. |+++. +.++..++....+....++++++.+||.....
T Consensus 4 ~~~~Ig~v~~~~~~d~~f~~~~~~gi~~~~~~~--------g~~~~--~~~~~~~~~~~~~~l~~l~~~~vdgIi~~~~~ 73 (296)
T 2hqb_A 4 GGGMVGLLVEDTIDDQGWNRKAYEGLLNIHSNL--------DVDVV--LEEGVNSEQKAHRRIKELVDGGVNLIFGHGHA 73 (296)
T ss_dssp --CEEEEECCCC----CCTHHHHHHHHHHHHHS--------CCEEE--EECCCCSHHHHHHHHHHHHHTTCCEEEECSTH
T ss_pred CCcEEEEEECCCCCCCcHHHHHHHHHHHHHHHh--------CCeEE--EEeCCCCHHHHHHHHHHHHHCCCCEEEEcCHh
Confidence 3578999997 333 56566677877776662 45554 45555555555556677888899999985432
Q ss_pred hhHHHHHHhhhhC-CCcEEEeecCCCCCCCCCCCcEEEccCChHHHHHHHHH-HHHH-cCCcEEEEEEecCccccchHHH
Q 002211 125 VMAHVLSHLANEL-QVPLLSFTALDPTLSPLQYPFFVQTAPNDLYLMSAIAE-MVSY-FGWGEVIAIFNDDDQGRNGVTA 201 (953)
Q Consensus 125 ~~a~av~~v~~~~-~vP~Is~~at~~~ls~~~~p~~fr~~p~d~~~~~ai~~-~l~~-~~w~~vaii~~d~~~g~~~~~~ 201 (953)
...++..++..+ ++|++...... .. +.+-.... |..++..++- ++.+ .+-+++++|...... . ..+.
T Consensus 74 -~~~~~~~~~~~~p~~p~v~id~~~---~~---~~~~~v~~-d~~~g~~lag~la~~l~~~~~Ig~i~g~~~~-~-r~~G 143 (296)
T 2hqb_A 74 -FAEYFSTIHNQYPDVHFVSFNGEV---KG---ENITSLHF-EGYAMGYFGGMVAASMSETHKVGVIAAFPWQ-P-EVEG 143 (296)
T ss_dssp -HHHHHHTTTTSCTTSEEEEESCCC---CS---SSEEEEEE-CCHHHHHHHHHHHHHTCSSSEEEEEESCTTC-H-HHHH
T ss_pred -HHHHHHHHHHHCCCCEEEEEecCc---CC---CCEEEEEe-chHHHHHHHHHHHHhhccCCeEEEEcCcCch-h-hHHH
Confidence 233455565544 78998764321 11 22222222 3334443333 2334 256899999854322 2 7888
Q ss_pred HHHHHHhcCcEEEEEEecCCCCCCChHHHHHHHHHHhcCCceEEEEEcchhhHHHHHHHHHHcC
Q 002211 202 LGDKLAEIRCKISYKSALPPDQSVTETDVRNELVKVRMMEARVIVVHGYSRTGLMVFDVAQRLG 265 (953)
Q Consensus 202 l~~~l~~~g~~v~~~~~~~~~~~~~~~d~~~~l~~i~~~~~~vii~~~~~~~~~~~~~~a~~~g 265 (953)
|.+.+++.|.. .....+... -.+...-.....++.+.++|+|+.. ....+..+++++++.|
T Consensus 144 f~~~~~~~~~~-~~~~~~~~~-~~~~~~g~~~a~~ll~~~~daI~~~-~D~~a~Gv~~a~~e~G 204 (296)
T 2hqb_A 144 FVDGAKYMNES-EAFVRYVGE-WTDADKALELFQELQKEQVDVFYPA-GDGYHVPVVEAIKDQG 204 (296)
T ss_dssp HHHHHHHTTCC-EEEEEECSS-SSCHHHHHHHHHHHHTTTCCEEECC-CTTTHHHHHHHHHHHT
T ss_pred HHHHHHHhCCC-eEEEEeecc-ccCHHHHHHHHHHHHHCCCcEEEEC-CCCCCHHHHHHHHHcC
Confidence 99999998874 222222211 0112333445566666679987654 4455677889999988
No 156
>3miz_A Putative transcriptional regulator protein, LACI family; LACL family, protein structure initiative II (PSI II), NYSGXRC, structural genomics; 1.91A {Rhizobium etli}
Probab=97.11 E-value=0.00065 Score=72.42 Aligned_cols=206 Identities=11% Similarity=0.044 Sum_probs=130.3
Q ss_pred CCceEEEeEEEecC-CCchh-HHHHHHHHHHHHHhcCCCCCCCcEEEEEEecCCCChHHHHHHHHHHHhcCcEEEEc-cC
Q 002211 46 KPEVLNVGAIFSFG-TVNGQ-VSRIAMKAAQDDINSDPRVLGGRKLSITMHDAKFNGFLSIMGALQFMETDTLAIVG-PQ 122 (953)
Q Consensus 46 ~~~~i~IG~l~~~~-~~~g~-~~~~a~~lAve~iN~~g~il~g~~l~l~~~D~~~~~~~a~~~a~~li~~~v~aiiG-p~ 122 (953)
....-+||++.|.. ..+-. ....+++-+.++. |+++. +.++..++....+....++++++.+||- |.
T Consensus 10 ~~~s~~Igvi~~~~~~~~~~~~~~~gi~~~a~~~--------g~~~~--~~~~~~~~~~~~~~~~~l~~~~vdGiIi~~~ 79 (301)
T 3miz_A 10 SSRSNTFGIITDYVSTTPYSVDIVRGIQDWANAN--------GKTIL--IANTGGSSEREVEIWKMFQSHRIDGVLYVTM 79 (301)
T ss_dssp --CCCEEEEEESSTTTCCSCHHHHHHHHHHHHHT--------TCEEE--EEECTTCHHHHHHHHHHHHHTTCSEEEEEEE
T ss_pred hCCCCEEEEEeCCCcCcccHHHHHHHHHHHHHHC--------CCEEE--EEeCCCChHHHHHHHHHHHhCCCCEEEEecC
Confidence 34467899999974 33334 6778888777763 56665 4566677777777777888888887773 22
Q ss_pred ChhhHHHHHHhhhhCCCcEEEeecCCCCCCCCCCCcEEEccCChHHHHHHHHHHHHHcCCcEEEEEEecCc--cccchHH
Q 002211 123 SAVMAHVLSHLANELQVPLLSFTALDPTLSPLQYPFFVQTAPNDLYLMSAIAEMVSYFGWGEVIAIFNDDD--QGRNGVT 200 (953)
Q Consensus 123 ~S~~a~av~~v~~~~~vP~Is~~at~~~ls~~~~p~~fr~~p~d~~~~~ai~~~l~~~~w~~vaii~~d~~--~g~~~~~ 200 (953)
.... ....+...++|+|......+.. ...+ .+..++...+..+++++...|-++++++..... ......+
T Consensus 80 ~~~~---~~~~~~~~~iPvV~~~~~~~~~--~~~~---~V~~D~~~~g~~a~~~L~~~G~~~I~~i~~~~~~~~~~~R~~ 151 (301)
T 3miz_A 80 YRRI---VDPESGDVSIPTVMINCRPQTR--ELLP---SIEPDDYQGARDLTRYLLERGHRRIGYIRLNPILLGAELRLD 151 (301)
T ss_dssp EEEE---CCCCCTTCCCCEEEEEEECSST--TSSC---EEEECHHHHHHHHHHHHHTTTCCSEEEEECCTTSHHHHHHHH
T ss_pred CccH---HHHHHHhCCCCEEEECCCCCCC--CCCC---EEeeChHHHHHHHHHHHHHcCCCeEEEEecCccchhHHHHHH
Confidence 2222 3445667799999876543211 0222 345667777888899999999999999985433 3445678
Q ss_pred HHHHHHHhcCcEE----EEEE---ecCCCCCCChHHHHHHHHHHhc--CCceEEEEEcchhhHHHHHHHHHHcCCCCCce
Q 002211 201 ALGDKLAEIRCKI----SYKS---ALPPDQSVTETDVRNELVKVRM--MEARVIVVHGYSRTGLMVFDVAQRLGMMDSGY 271 (953)
Q Consensus 201 ~l~~~l~~~g~~v----~~~~---~~~~~~~~~~~d~~~~l~~i~~--~~~~vii~~~~~~~~~~~~~~a~~~g~~~~~~ 271 (953)
.|.+++++.|+.+ .... .+... .......+.++.+ .++++|+. .+...+..+++++++.|+..++-
T Consensus 152 Gf~~al~~~g~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~l~~~~~~~ai~~-~~d~~A~g~~~al~~~g~~vP~d 226 (301)
T 3miz_A 152 AFRRTTSEFGLTENDLSISLGMDGPVGAE----NNYVFAAATEMLKQDDRPTAIMS-GNDEMAIQIYIAAMALGLRIPQD 226 (301)
T ss_dssp HHHHHHHHHTCCGGGEEEEECEESSTTSC----EECHHHHHHHHHTSTTCCSEEEE-SSHHHHHHHHHHHHTTTCCHHHH
T ss_pred HHHHHHHHcCCCCCcceEEEcCCCCcCcc----ccHHHHHHHHHHcCCCCCcEEEE-CCHHHHHHHHHHHHHcCCCCCCC
Confidence 8999999988753 2211 11111 1111133444433 35777664 45567888999999999865443
Q ss_pred EEE
Q 002211 272 VWI 274 (953)
Q Consensus 272 ~wi 274 (953)
+-|
T Consensus 227 i~v 229 (301)
T 3miz_A 227 VSI 229 (301)
T ss_dssp CEE
T ss_pred eeE
Confidence 333
No 157
>3qi7_A Putative transcriptional regulator; periplasmic binding protein-like, structural genomics, joint for structural genomics, JCSG; HET: MSE; 1.86A {Clostridium difficile}
Probab=96.77 E-value=0.044 Score=58.65 Aligned_cols=216 Identities=12% Similarity=0.042 Sum_probs=128.2
Q ss_pred CceEEEeEEEecCCCchhHHHHHHHHHHHHHhcCCCCC---CC--cEEEEEEecCCCCh-----HHHHHHHHHHHhc-Cc
Q 002211 47 PEVLNVGAIFSFGTVNGQVSRIAMKAAQDDINSDPRVL---GG--RKLSITMHDAKFNG-----FLSIMGALQFMET-DT 115 (953)
Q Consensus 47 ~~~i~IG~l~~~~~~~g~~~~~a~~lAve~iN~~g~il---~g--~~l~l~~~D~~~~~-----~~a~~~a~~li~~-~v 115 (953)
.++++||++.+. ........++++-.+++-|..+... .| ..+.+++.++-.|+ ..++....++... ++
T Consensus 10 ~~~~~igi~t~t-~s~se~t~~~a~~~i~~yg~~pn~~~l~~~~s~~iG~I~~~~~pd~F~se~~ttI~~I~~~a~~~gy 88 (371)
T 3qi7_A 10 IDDFKVAVVTQP-LSENKVQYNMVEEMAKEYEEENKIDKDKDGQTKVKQTIKHVVLPENFTSNIDSAINKIVKLADDKEV 88 (371)
T ss_dssp CCCEEEEEEECC-TTTCHHHHHHHHHHHHHHHHHTTCCC-----CCCCEEEEEEECCTTGGGGHHHHHHHHHGGGGCTTE
T ss_pred CCCeEEEEEcCC-cCCCHHHHHHHHHHHHHhCCCcccchhcccccccceEEEEeccCCCchHHHHHHHHHHHHHhhcCCC
Confidence 457999998764 3445788899999999998744211 01 22334444433333 3456666666665 78
Q ss_pred EEEEccCChhhHHHHHHhhhhCCCcEEEeecCCCCCCC--CCCCcEEEccCChHHHHHHHHHHHHHcCCcEEEEEEecCc
Q 002211 116 LAIVGPQSAVMAHVLSHLANELQVPLLSFTALDPTLSP--LQYPFFVQTAPNDLYLMSAIAEMVSYFGWGEVIAIFNDDD 193 (953)
Q Consensus 116 ~aiiGp~~S~~a~av~~v~~~~~vP~Is~~at~~~ls~--~~~p~~fr~~p~d~~~~~ai~~~l~~~~w~~vaii~~d~~ 193 (953)
.+||.-..........+...+.+++.|-+.+....-.. ..... +.+...+..-+..+++++...|-+++++|.....
T Consensus 89 k~II~n~~~~~~~~~i~~lkekrvDgIIi~~~~~ed~~~i~~~~d-i~V~~Dn~~Ggy~A~~~Li~~Ghk~Ia~Isgp~~ 167 (371)
T 3qi7_A 89 QAIVVSTDQAGLLPALQKVKEKRPEIITISAPMGDDKNQLSQFVD-VNLGVSAEERGKVLAERSKEMGAKAFIHYASTDD 167 (371)
T ss_dssp EEEEEECSSCCCHHHHHHHHHHCTTSEEEESSCCSCHHHHHHHSS-EEEECCHHHHHHHHHHHHHHTTCSCEEEEEETTG
T ss_pred eEEEEECCCcchHHHHHHHHhcCCCEEEEeccccccchhhcccCc-eEEEeChHHHHHHHHHHHHHCCCCEEEEEecccc
Confidence 88776444322234456667667776554443211000 00011 2455555566666778999999999999986432
Q ss_pred --c--ccchHHHHHHHHHhcCcEEEEEEecCCCCCCChHHHHHHHHHH---------hc-CCceEEEEEcchhhHHHHHH
Q 002211 194 --Q--GRNGVTALGDKLAEIRCKISYKSALPPDQSVTETDVRNELVKV---------RM-MEARVIVVHGYSRTGLMVFD 259 (953)
Q Consensus 194 --~--g~~~~~~l~~~l~~~g~~v~~~~~~~~~~~~~~~d~~~~l~~i---------~~-~~~~vii~~~~~~~~~~~~~ 259 (953)
+ .....+.+++++++.|+.+.....-.+. .+..+ ...+++ +. ..++. |++++...+..+++
T Consensus 168 ~~~~~~~~R~~Gyk~Al~e~Gi~~~~~~~~d~t---~e~G~-~~a~~lL~~~~~~~~~~~~~~TA-IFatND~mAiG~ik 242 (371)
T 3qi7_A 168 LKDVNIAKRLEMIKETCKNIGLPFVQVNTPNIN---TEEDK-NKVKQFLNEDIEKQVKKYGKDIN-VFGVNEYMDEVILT 242 (371)
T ss_dssp GGSHHHHHHHHHHHHHHHHTTCCEEEEEECCCS---STHHH-HHHHHHHHHHHHHHHHHHCSCCE-EEESSHHHHHHHHH
T ss_pred ccchhHHHHHHHHHHHHHHcCCCceeecCCCCc---hHHHH-HHHHHHHhccccchhhccCCCcE-EEECCHHHHHHHHH
Confidence 2 2335788999999999987654322222 12222 223222 12 23454 55666778899999
Q ss_pred HHHHcCCCCC
Q 002211 260 VAQRLGMMDS 269 (953)
Q Consensus 260 ~a~~~g~~~~ 269 (953)
++++.|...|
T Consensus 243 al~e~Gi~VP 252 (371)
T 3qi7_A 243 KALELKYIVA 252 (371)
T ss_dssp HHHHHCCBBC
T ss_pred HHHHcCCccC
Confidence 9999997543
No 158
>4ddd_A Immunogenic protein; ssgcid, structural genomics, seattle structural genomics CEN infectious disease, immune system; 1.90A {Ehrlichia chaffeensis}
Probab=96.72 E-value=0.0029 Score=68.10 Aligned_cols=62 Identities=27% Similarity=0.230 Sum_probs=44.7
Q ss_pred CCCCChHHhhhCCCeEEEE-eCchHHH---HHHHhhCCCccc--eEeCCCHHHHHHHHHcCCcEEEEccc
Q 002211 700 SPIKGIDTLMTSNDRVGYQ-VGSFAEN---YLIEELSIPKSR--LVALGSPEEYAIALENRTVAAVVDER 763 (953)
Q Consensus 700 ~~I~sl~dL~~~~~~ig~~-~~s~~~~---~l~~~~~~~~~~--~~~~~~~~~~~~~l~~g~~~a~~~~~ 763 (953)
.+|++++||. +++|++. .|+..+. .+.+..+..... .+.|.+..+.+.+|..|++|+++...
T Consensus 136 s~i~sl~DL~--gk~v~~~~~Gs~~~~~~~~~l~~~Gi~~~~v~~v~~~g~~~a~~aL~~G~vDa~~~~~ 203 (327)
T 4ddd_A 136 SNISVIDDIK--GKRVNIGSPGTGVRVAMLKLLGEKGWTKKDFSVMAELKSSEQAQALCDNKIDVMVDVI 203 (327)
T ss_dssp SSCCSGGGGT--TSEEECCSTTSHHHHHHHHHHHHHTCCGGGCSEEECCCHHHHHHHHHTTSCSBEEEEE
T ss_pred CCCCCHHHhC--CCEEecCCCCccHHHHHHHHHHHcCCChHhcchhhcCCHHHHHHHHHcCCCCEEEEcc
Confidence 3789999996 7888884 4553322 222445555433 47889999999999999999998743
No 159
>3h5t_A Transcriptional regulator, LACI family; DNA-dependent, protein structure initiative II(PSI II), NYSGXRC, 11232D), structural genomics; 2.53A {Corynebacterium glutamicum}
Probab=96.68 E-value=0.014 Score=64.00 Aligned_cols=207 Identities=9% Similarity=0.017 Sum_probs=117.7
Q ss_pred CceEEEeEEEecCCC--chhHHHHHHHHHHHHHhcCCCCCCCcEEEEEEecCCCChHHHHHHHHHHHhcCcEEEEccCCh
Q 002211 47 PEVLNVGAIFSFGTV--NGQVSRIAMKAAQDDINSDPRVLGGRKLSITMHDAKFNGFLSIMGALQFMETDTLAIVGPQSA 124 (953)
Q Consensus 47 ~~~i~IG~l~~~~~~--~g~~~~~a~~lAve~iN~~g~il~g~~l~l~~~D~~~~~~~a~~~a~~li~~~v~aiiGp~~S 124 (953)
...-+||+++|.... ........+.-++++.=+ |+.+.+...+...+. .-......+..+++.+||-....
T Consensus 66 ~~s~~Igvi~~~~~~~~~~~~~~~~~~~gi~~~a~------g~~~~~~~~~~~~~~-~~~~~~~~l~~~~vdGiIi~~~~ 138 (366)
T 3h5t_A 66 RRAGAIGVLLTEDLTYAFEDMASVDFLAGVAQAAG------DTQLTLIPASPASSV-DHVSAQQLVNNAAVDGVVIYSVA 138 (366)
T ss_dssp --CCEEEEEESSCTTHHHHSHHHHHHHHHHHHHSS------SCEEEEEECCCCTTC-CHHHHHHHHHTCCCSCEEEESCC
T ss_pred CCCCEEEEEecCCccccccCHHHHHHHHHHHHHHh------hCCEEEEEcCCCccH-HHHHHHHHHHhCCCCEEEEecCC
Confidence 345789999986422 111222233333333211 567777665543321 12334455666677666632111
Q ss_pred hhHHHHHHhhhhCCCcEEEeecCCCCCCCCCCCcEEEccCChHHHHHHHHHHHHHcCCcEEEEEEec-------------
Q 002211 125 VMAHVLSHLANELQVPLLSFTALDPTLSPLQYPFFVQTAPNDLYLMSAIAEMVSYFGWGEVIAIFND------------- 191 (953)
Q Consensus 125 ~~a~av~~v~~~~~vP~Is~~at~~~ls~~~~p~~fr~~p~d~~~~~ai~~~l~~~~w~~vaii~~d------------- 191 (953)
... .....+...++|+|...... .....++ +..++..-+..++++|...|-+++++|...
T Consensus 139 ~~~-~~~~~l~~~~iPvV~i~~~~---~~~~~~~---V~~D~~~~~~~a~~~L~~~G~r~I~~i~~~~~~~~~~g~~~~~ 211 (366)
T 3h5t_A 139 KGD-PHIDAIRARGLPAVIADQPA---REEGMPF---IAPNNRKAIAPAAQALIDAGHRKIGILSIRLDRANNDGEVTRE 211 (366)
T ss_dssp TTC-HHHHHHHHHTCCEEEESSCC---SCTTCCE---EEECHHHHTHHHHHHHHHTTCCSEEEEEECCSSSCCCEECCHH
T ss_pred CCh-HHHHHHHHCCCCEEEECCcc---CCCCCCE---EEeChHHHHHHHHHHHHHCCCCcEEEEecccccccccCccccc
Confidence 111 23345566799999875422 1122333 456677778888899999999999999832
Q ss_pred ------CccccchHHHHHHHHHhcCcEEE---EEEecCCCCCCChHHHHHHHHHHhc--CCceEEEEEcchhhHHHHHHH
Q 002211 192 ------DDQGRNGVTALGDKLAEIRCKIS---YKSALPPDQSVTETDVRNELVKVRM--MEARVIVVHGYSRTGLMVFDV 260 (953)
Q Consensus 192 ------~~~g~~~~~~l~~~l~~~g~~v~---~~~~~~~~~~~~~~d~~~~l~~i~~--~~~~vii~~~~~~~~~~~~~~ 260 (953)
........+.|.+++++.|+.+. ....-.. +..+-...+.++.+ ..+++|+. .+...+..++++
T Consensus 212 ~~~~~~~~~~~~R~~Gf~~al~~~g~~~~~~~~~~~~~~----~~~~~~~~~~~ll~~~~~~~ai~~-~nD~~A~g~~~a 286 (366)
T 3h5t_A 212 RLENAQYQVQRDRVRGAMEVFIEAGIDPGTVPIMECWIN----NRQHNFEVAKELLETHPDLTAVLC-TVDALAFGVLEY 286 (366)
T ss_dssp HHHTCCCTTHHHHHHHHHHHHHHHTCCGGGSCEEEESSC----CHHHHHHHHHHHHHHCTTCCEEEE-SSHHHHHHHHHH
T ss_pred cccccccchHHHHHHHHHHHHHHCCCCCCcceEEEcCCC----CHHHHHHHHHHHHcCCCCCcEEEE-CCcHHHHHHHHH
Confidence 22334567899999999987531 1111111 13333444555533 35777665 445677789999
Q ss_pred HHHcCCCCCceE
Q 002211 261 AQRLGMMDSGYV 272 (953)
Q Consensus 261 a~~~g~~~~~~~ 272 (953)
++++|+..++-+
T Consensus 287 l~~~G~~vP~di 298 (366)
T 3h5t_A 287 LKSVGKSAPADL 298 (366)
T ss_dssp HHHTTCCTTTTC
T ss_pred HHHcCCCCCCce
Confidence 999998755433
No 160
>3ixl_A Amdase, arylmalonate decarboxylase; enantioselective decarboxylation, lyase; HET: CME PAC; 1.45A {Bordetella bronchiseptica} PDB: 3ixm_A 2vlb_A 3dg9_A 3ip8_A* 3dtv_A* 3eis_A*
Probab=96.57 E-value=0.037 Score=56.15 Aligned_cols=128 Identities=11% Similarity=-0.010 Sum_probs=91.4
Q ss_pred HHHHHHHhcCcEEEEccCChhhH--------HHHHHhhhhCCCcEEEeecCCCCCCCCCCCcEEEccCChHHHHHHHHHH
Q 002211 105 MGALQFMETDTLAIVGPQSAVMA--------HVLSHLANELQVPLLSFTALDPTLSPLQYPFFVQTAPNDLYLMSAIAEM 176 (953)
Q Consensus 105 ~~a~~li~~~v~aiiGp~~S~~a--------~av~~v~~~~~vP~Is~~at~~~ls~~~~p~~fr~~p~d~~~~~ai~~~ 176 (953)
+++.+|...++.+|+=+.+|+.. .....+.+..++|+++. +.++++.
T Consensus 57 ~aa~~L~~ag~d~i~~aCtsas~~~G~~~~~~~~~~l~~~~~iPv~~~-------------------------~~A~~~a 111 (240)
T 3ixl_A 57 DHARRLQKQGAAVVSLMCTSLSFYRGAAFNAALTVAMREATGLPCTTM-------------------------STAVLNG 111 (240)
T ss_dssp HHHHHHHHTTEEEEEECCHHHHHTTCHHHHHHHHHHHHHHHSSCEEEH-------------------------HHHHHHH
T ss_pred HHHHHhccCCCCEEEECCcHHHHhcccchHHHHHHHHHhccCCCEECH-------------------------HHHHHHH
Confidence 34555655699999987766554 34456667778999862 4677888
Q ss_pred HHHcCCcEEEEEEecCccccchHHHHHHHHHhcCcEEEEEEecCCCC-----CCChHHHHHHHHH-H-hcCCceEEEEEc
Q 002211 177 VSYFGWGEVIAIFNDDDQGRNGVTALGDKLAEIRCKISYKSALPPDQ-----SVTETDVRNELVK-V-RMMEARVIVVHG 249 (953)
Q Consensus 177 l~~~~w~~vaii~~d~~~g~~~~~~l~~~l~~~g~~v~~~~~~~~~~-----~~~~~d~~~~l~~-i-~~~~~~vii~~~ 249 (953)
++..|.++|+++.. |.....+.+++.+++.|++|+......... ..+...+...+.+ + ...++|+||+.|
T Consensus 112 l~~~g~~rvglltp---y~~~~~~~~~~~l~~~Giev~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~adaivL~C 188 (240)
T 3ixl_A 112 LRALGVRRVALATA---YIDDVNERLAAFLAEESLVPTGCRSLGITGVEAMARVDTATLVDLCVRAFEAAPDSDGILLSS 188 (240)
T ss_dssp HHHTTCSEEEEEES---SCHHHHHHHHHHHHHTTCEEEEEEECCCCCHHHHHTCCHHHHHHHHHHHHHTSTTCSEEEEEC
T ss_pred HHHhCCCEEEEEeC---ChHHHHHHHHHHHHHCCCEEeccccCCCCCcchhhcCCHHHHHHHHHHHhhcCCCCCEEEEeC
Confidence 88999999999974 777888899999999999987765443221 1235567777888 7 777899999987
Q ss_pred chhhHHHHHHH
Q 002211 250 YSRTGLMVFDV 260 (953)
Q Consensus 250 ~~~~~~~~~~~ 260 (953)
..-....++.+
T Consensus 189 T~l~~l~~i~~ 199 (240)
T 3ixl_A 189 GGLLTLDAIPE 199 (240)
T ss_dssp TTSCCTTHHHH
T ss_pred CCCchhhhHHH
Confidence 65433333333
No 161
>2x7q_A Ca3427, possible thiamine biosynthesis enzyme; unknown function; 2.00A {Candida albicans} PDB: 2x7p_A
Probab=96.55 E-value=0.0093 Score=64.04 Aligned_cols=108 Identities=17% Similarity=0.199 Sum_probs=63.6
Q ss_pred CCCCChHHhhhCCCeEEEEe-CchHHH---HHHHhhCCCc-cceEeCCCHHHHHHHHHcC----CcEEEEccchhHHHHH
Q 002211 700 SPIKGIDTLMTSNDRVGYQV-GSFAEN---YLIEELSIPK-SRLVALGSPEEYAIALENR----TVAAVVDERPYIDLFL 770 (953)
Q Consensus 700 ~~I~sl~dL~~~~~~ig~~~-~s~~~~---~l~~~~~~~~-~~~~~~~~~~~~~~~l~~g----~~~a~~~~~~~~~~~~ 770 (953)
++|++++|| ++||+.. |+.... .+.+..++.. .+++.+.+..+...+|.+| ++||++.+........
T Consensus 110 ~~i~s~~DL----K~i~~~~~gs~~~~~~~~l~~~~Gl~~dv~~v~~~~~~~~~~al~~G~~~~~vDa~~~ep~~~~~~~ 185 (321)
T 2x7q_A 110 DDVTDAKQL----KRIGVSRIGSGSYVMSFVLAHQLGVPSFDQFQVLSNFKNLRDSVNLKDGVEGSDAFMWEYFTSKKYY 185 (321)
T ss_dssp TTCSSGGGC----CEEEESSTTSHHHHHHHHHHHHHTSCCCCEEEECCSHHHHHHHHTTCTTSCCCSEEEEEHHHHHHHH
T ss_pred CCCCChHHc----ceEEeeCCCcHHHHHHHHHHHhcCCCcceEEEEcCChHHHHHHHHcCCCccceEEEEecCccchhhc
Confidence 479999999 6899986 654332 2223345442 4567777889999999999 9999875533333332
Q ss_pred hcCcceEEeCCccccCc-cEEEecCC----Cc-----chHHHHHHHHhhhcc
Q 002211 771 SDHCQFSVRGQEFTKSG-WGFAFPRD----SP-----LAIDMSTAILTLSEN 812 (953)
Q Consensus 771 ~~~~~l~~~~~~~~~~~-~~~~~~k~----sp-----l~~~~n~~i~~l~e~ 812 (953)
. ...+..+.....+.+ .+++++++ .| +...+.+++..+.++
T Consensus 186 ~-~g~~~~~~d~~~~~~~~~l~~~~~~~~~~p~~v~~~~~a~~~a~~~~~~~ 236 (321)
T 2x7q_A 186 D-NHEIKQIDQIYTPWSSWVVATSSDSLQAKSDVIKNFIDAVNQGIQYYNEH 236 (321)
T ss_dssp H-TTSEEEEEEEECSSCSEEEEEEHHHHHHSHHHHHHHHHHHHHHHHHHHHC
T ss_pred c-CCceEEccccCCCCceEEEEEcHHHHhhCHHHHHHHHHHHHHHHHHHHHC
Confidence 2 334555443332322 36676654 34 344444555555443
No 162
>2k1e_A Water soluble analogue of potassium channel, KCSA; homotetramer, ION transport, ionic channel, membrane, transmembrane, transport; NMR {Escherichia coli} PDB: 2kb1_A
Probab=96.54 E-value=0.0016 Score=56.47 Aligned_cols=78 Identities=15% Similarity=0.089 Sum_probs=62.4
Q ss_pred HHHHHHHHhhhhhcccCCCCCCCCcccchhhHHHHHHHhhccccC--CcccchhHHHHHHHHHHHHHhhhhcccceeeee
Q 002211 616 FFLVVGTVVWILEHRLNDEFRGPPRKQIVTVLWFSFSTMFFAHRE--NTVSTLGRVVLIIWLFVVLIITSSYTASLTSIL 693 (953)
Q Consensus 616 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~--~~~s~~~R~l~~~w~~~~lil~~~Yta~L~s~L 693 (953)
.+++.+++++.+|+..+ +.+..++.+++||++.++...|.. .|.+..+|++.++|.++++.+.+...+.+++.+
T Consensus 18 ~~~~~a~~~~~~E~~~~----~~~~~~~~~a~y~~~~T~tTvGyGDi~P~t~~gr~~~~~~~l~G~~~~~~~~~~i~~~~ 93 (103)
T 2k1e_A 18 VLEEASKKAVEAERGAP----GAALISYPDAIWWSVETATTVGYGDRYPVTEEGRKVAEQVMKAGIEVFALVTAALATDF 93 (103)
T ss_dssp HHHHHHHHHHHHHTTST----TCCCCCGGGTTTTTTGGGGCCSCCSSCCCSSSCTHHHHHHHHHHHHHHHHTHHHHHTTG
T ss_pred HHHHHHHhhhhhccCCC----CcccccHHHHHHHHHHHHhcccCCCCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33445666777776543 233457899999999999988743 799999999999999999999999999999888
Q ss_pred eecc
Q 002211 694 TVQQ 697 (953)
Q Consensus 694 t~~~ 697 (953)
+...
T Consensus 94 ~~~~ 97 (103)
T 2k1e_A 94 VRRE 97 (103)
T ss_dssp GGHH
T ss_pred HHHH
Confidence 7654
No 163
>2ih3_C Voltage-gated potassium channel; ION channel D-amino acid semi-synthetic, membrane protein; HET: 1EM; 1.72A {Streptomyces lividans} PDB: 2ih1_C* 1r3j_C* 1k4d_C* 1r3i_C* 1k4c_C* 1r3k_C* 1r3l_C* 2bob_C* 2boc_C* 2hvj_C* 2hvk_C* 2itc_C 2itd_C 3gb7_C* 3iga_C* 1jvm_A 1s5h_C* 3ifx_A* 1j95_A 2jk5_C* ...
Probab=96.08 E-value=0.0076 Score=54.02 Aligned_cols=76 Identities=17% Similarity=0.201 Sum_probs=60.6
Q ss_pred HHHHHHhhhhhcccCCCCCCCCcccchhhHHHHHHHhhccccC--CcccchhHHHHHHHHHHHHHhhhhcccceeeeeee
Q 002211 618 LVVGTVVWILEHRLNDEFRGPPRKQIVTVLWFSFSTMFFAHRE--NTVSTLGRVVLIIWLFVVLIITSSYTASLTSILTV 695 (953)
Q Consensus 618 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~--~~~s~~~R~l~~~w~~~~lil~~~Yta~L~s~Lt~ 695 (953)
++.+.+.|.+|+..+ ++...++.+++|+++.++...|.. .|.+..+|++.++|.++++.+.+...+.+++.++.
T Consensus 41 ~~~a~~~~~~E~~~~----~~~~~~~~~a~y~~~~T~tTvGyGDi~P~t~~gr~~~~~~~~~Gi~~~~~~~~~i~~~~~~ 116 (122)
T 2ih3_C 41 LAGSYLAVLAERGAP----GAQLITYPRALWWACETATTVAYGDLYPVTLWGRLVAVVVMVAGITSFGLVTAALATWFVG 116 (122)
T ss_dssp HHHHHHHHHHHTTST----TCCCCSHHHHHHHHHHHHTTCCCSSSCCCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHhhheeeecCC----CCccCccccchhheeeeeeeeecCCCCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344566777776432 233457899999999999988743 79999999999999999999999999999988765
Q ss_pred cc
Q 002211 696 QQ 697 (953)
Q Consensus 696 ~~ 697 (953)
..
T Consensus 117 ~~ 118 (122)
T 2ih3_C 117 RE 118 (122)
T ss_dssp HH
T ss_pred HH
Confidence 43
No 164
>2g29_A Nitrate transport protein NRTA; solute-binding protein, alpha-beta protein; 1.50A {Synechocystis SP}
Probab=95.99 E-value=0.027 Score=62.87 Aligned_cols=103 Identities=11% Similarity=0.176 Sum_probs=62.6
Q ss_pred HHhhhCCCeEEEE-eCchHHHHHH---HhhCCCc---cceEeCCCHHHHHHHHHcCCcEEEEccchhHHHHHhcCc-ceE
Q 002211 706 DTLMTSNDRVGYQ-VGSFAENYLI---EELSIPK---SRLVALGSPEEYAIALENRTVAAVVDERPYIDLFLSDHC-QFS 777 (953)
Q Consensus 706 ~dL~~~~~~ig~~-~~s~~~~~l~---~~~~~~~---~~~~~~~~~~~~~~~l~~g~~~a~~~~~~~~~~~~~~~~-~l~ 777 (953)
+||. |++||+. .++....+++ +..++.. .+++.+ ...+...+|.+|++|+++...++......+.. ...
T Consensus 151 ~dLk--Gk~iav~~~gs~~~~~l~~~L~~~Gl~~~~dv~~v~~-~~~~~~~aL~~G~vDa~~~~eP~~~~~~~~g~~~~~ 227 (417)
T 2g29_A 151 AKVT--DPKVAMTFPGGTHDMWIRYWLAAGGMEPGKDFSTIVV-PPAQMVANVKVNAMESFCVGEPWPLQTVNQGVGYQA 227 (417)
T ss_dssp HTSS--SCEEEESSTTSHHHHHHHHHHHHTTCCBTTTBEEEEC-CGGGHHHHHHTTSCSEEEEETTHHHHHHHHTSCEEE
T ss_pred HhcC--CCEEEEeCCCCHHHHHHHHHHHHcCCCCCCceEEEEC-CHHHHHHHHHcCCCCEEEeCCCHHHHHHHcCCCEEE
Confidence 6775 8999998 4665433332 2345543 355666 46789999999999999988887766555533 222
Q ss_pred E-eCCccccCc-cEEEecCC----Cc-----chHHHHHHHHhhhc
Q 002211 778 V-RGQEFTKSG-WGFAFPRD----SP-----LAIDMSTAILTLSE 811 (953)
Q Consensus 778 ~-~~~~~~~~~-~~~~~~k~----sp-----l~~~~n~~i~~l~e 811 (953)
. ..+.....+ ..++++++ .| +...+.++..++.+
T Consensus 228 ~~~~~~~~~~p~~~l~~~~~~~~~~p~~~~~~~~A~~~A~~~~~~ 272 (417)
T 2g29_A 228 LTTGQLWKDHPEKAFGMRADWVDQNPKAAKALLMAVMEAQQWCDQ 272 (417)
T ss_dssp EEGGGTBTTCBCEEEEEEHHHHHHCHHHHHHHHHHHHHHHHHHHC
T ss_pred EechhhcCCCceEEEEECHHHHHHCHHHHHHHHHHHHHHHHHHhC
Confidence 2 223222222 46777754 44 44456666666665
No 165
>3eff_K Voltage-gated potassium channel; FULL length KCSA, bulge helix, cell membrane, ION transport, ionic channel, membrane, transmembrane; 3.80A {Streptomyces lividans}
Probab=95.80 E-value=0.015 Score=53.61 Aligned_cols=73 Identities=18% Similarity=0.182 Sum_probs=57.9
Q ss_pred HHHHHhhhhhcccCCCCCCCCcccchhhHHHHHHHhhccccC--CcccchhHHHHHHHHHHHHHhhhhcccceeeeeee
Q 002211 619 VVGTVVWILEHRLNDEFRGPPRKQIVTVLWFSFSTMFFAHRE--NTVSTLGRVVLIIWLFVVLIITSSYTASLTSILTV 695 (953)
Q Consensus 619 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~--~~~s~~~R~l~~~w~~~~lil~~~Yta~L~s~Lt~ 695 (953)
+.+.+++.+|+.. .++....+.+++||++.++...|.. .|.+..+|++.++|.++++.+.+...+.+++.+..
T Consensus 21 ~~a~~~~~~e~~~----~~~~~~~~~~a~yf~~~T~tTvGyGd~~P~t~~~r~~~~~~~~~G~~~~~~~~~~i~~~~~~ 95 (139)
T 3eff_K 21 AGSYLAVLAERGA----PGAQLITYPRALWWSVETATTVGYGDLYPVTLWGRLVAVVVMVAGITSFGLVTAALATWFVG 95 (139)
T ss_dssp HHHHHHHHTTSSC----TTCCCCCHHHHHHHHHHHHTTCCCSSSCCCSSHHHHHHHHHHHHHHHHHHHHHHHHTTTTTH
T ss_pred HHHHHHHHHhcCC----CCcccCCHHHHHHHHheeeecccCCCCcCCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455566666543 2233456889999999999988744 79999999999999999999999999999888744
No 166
>1zbm_A Hypothetical protein AF1704; alpha-beta protein, structural genomics, PSI, protein struct initiative; 2.30A {Archaeoglobus fulgidus} SCOP: c.94.1.1
Probab=95.79 E-value=0.049 Score=56.91 Aligned_cols=99 Identities=14% Similarity=-0.072 Sum_probs=58.2
Q ss_pred HHhhhCCCeEEEE-eCchHHHHHHHhhCCCccceEeCCCHHHHHHHHHcCCcEEEEccc-hhHHHHHhcCcceEEeCC--
Q 002211 706 DTLMTSNDRVGYQ-VGSFAENYLIEELSIPKSRLVALGSPEEYAIALENRTVAAVVDER-PYIDLFLSDHCQFSVRGQ-- 781 (953)
Q Consensus 706 ~dL~~~~~~ig~~-~~s~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~g~~~a~~~~~-~~~~~~~~~~~~l~~~~~-- 781 (953)
+||. |++||+. .++....+++..+. ..+++ +.+..+...++.+|++||.+... +... +... ++..+..
T Consensus 99 ~DLk--GK~Iav~~~~s~~~~ll~~~l~--~~~~~-~~~~~~~~~al~~G~vDa~~~~~~~~~~-~~~~--g~~~~~~~~ 170 (280)
T 1zbm_A 99 ISLD--GKRIAVPGRYTTANLLLKLAVE--DFEPV-EMPFDRIIQAVLDEEVDAGLLIHEGQIT-YADY--GLKCVLDLW 170 (280)
T ss_dssp CCCT--TCEEEESCTTSHHHHHHHHHCS--SCEEE-ECCGGGHHHHHHTTSSSEEEECSGGGGT-GGGG--TCEEEEEHH
T ss_pred hhcC--CCEEEecCCCcHHHHHHHHHhc--cCceE-ecCHHHHHHHHHcCCCCEEEEechHHhH-HHhc--CCeEeccHH
Confidence 6775 8999996 45544433433222 22444 34668899999999999988543 4444 2222 2222211
Q ss_pred -c----c-ccCc-cEEEecCC-Cc-chHHHHHHHHhhhcc
Q 002211 782 -E----F-TKSG-WGFAFPRD-SP-LAIDMSTAILTLSEN 812 (953)
Q Consensus 782 -~----~-~~~~-~~~~~~k~-sp-l~~~~n~~i~~l~e~ 812 (953)
. . .+.+ ..++++++ .| +...|.+++.+..+.
T Consensus 171 ~~~~~~~g~~~~~~~~~~~~~~~p~~v~~~~~a~~~a~~~ 210 (280)
T 1zbm_A 171 DWWSEQVKLPLPLGLNAIRRDLSVEVQEEFLRAMRESIAF 210 (280)
T ss_dssp HHHHTTCSSCEEEEEEEEETTSCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHhhCCCCCeeEEEEcccCCHHHHHHHHHHHHHHHHH
Confidence 0 0 1112 35778888 67 778888877766554
No 167
>2a9h_A Voltage-gated potassium channel; potassium channel, KCSA, structure, membrane protein, metal transport; HET: PCA; NMR {Streptomyces lividans} SCOP: f.14.1.1
Probab=95.65 E-value=0.014 Score=54.47 Aligned_cols=77 Identities=16% Similarity=0.165 Sum_probs=61.4
Q ss_pred HHHHHHhhhhhcccCCCCCCCCcccchhhHHHHHHHhhccccC--CcccchhHHHHHHHHHHHHHhhhhcccceeeeeee
Q 002211 618 LVVGTVVWILEHRLNDEFRGPPRKQIVTVLWFSFSTMFFAHRE--NTVSTLGRVVLIIWLFVVLIITSSYTASLTSILTV 695 (953)
Q Consensus 618 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~--~~~s~~~R~l~~~w~~~~lil~~~Yta~L~s~Lt~ 695 (953)
++.+++++.+|+..+ ++...++.+++||++.++...|.. .|.+..+|++.++|.++++.+.+..++.+++.++.
T Consensus 64 ~~~a~~~~~~E~~~~----~~~~~s~~~a~y~s~vTltTVGYGDi~P~t~~gr~~~~~~~l~Gv~~~a~~~~~i~~~~~~ 139 (155)
T 2a9h_A 64 LAGSYLAVLAERGAP----GAALISYPDALWWSVETATTVGYGDLYPVTLWGRCVAVVVMVAGITSYGLVFAAVATWFVG 139 (155)
T ss_dssp HHHHHHHHHHHTTSS----CSSTTSHHHHHHHHHHHHTTCCCSSSCCCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHhccCC----CCccCcccceeheeeeeeecccCCCCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344555777776432 233446899999999999988744 79999999999999999999999999999998876
Q ss_pred ccc
Q 002211 696 QQL 698 (953)
Q Consensus 696 ~~~ 698 (953)
...
T Consensus 140 ~~~ 142 (155)
T 2a9h_A 140 REQ 142 (155)
T ss_dssp CCC
T ss_pred HHH
Confidence 553
No 168
>3jv9_A OXYR, transcriptional regulator, LYSR family; LYSR-type transcriptional regulator, LTTR, redox, structural genomics, OPPF; 2.39A {Neisseria meningitidis}
Probab=94.97 E-value=0.29 Score=48.13 Aligned_cols=193 Identities=12% Similarity=0.111 Sum_probs=117.6
Q ss_pred cceEEEecCcccccccEEeeCCcceEEEeeHHHHHHHHHhCCCcccEEEeeCCCCCCCCChHHHHHHHHcCceeEEEecE
Q 002211 485 RQLRIGVPNRVSYRDFVFKVNGTDIVHGYCIDVFLAAVRLLPYAVPYKFIPYGDGHKNPTYSELINQITTGVFDAAVGDI 564 (953)
Q Consensus 485 ~~lri~v~~~~~~~p~~~~~~~~~~~~G~~~dll~~la~~l~~~~~~~~~~~~~~~~n~~~~~~i~~l~~g~~Di~~~~~ 564 (953)
++||||+.. .+. ..+-.+++..+.++.+ .++++... ++..++.+.|.+|++|+++...
T Consensus 4 g~l~Ig~~~--~~~------------~~~l~~~l~~~~~~~P-~i~i~i~~-------~~~~~~~~~l~~g~~Dl~i~~~ 61 (219)
T 3jv9_A 4 GAFKLGLIF--TVA------------PYLLPKLIVSLRRTAP-KMPLMLEE-------NYTHTLTESLKRGDVDAIIVAE 61 (219)
T ss_dssp CCEEEEEET--TTH------------HHHHHHHHHHHHHHST-TCCEEEEE-------ECHHHHHHHHHHTSSSEEEEES
T ss_pred CcEEEEEcc--hhh------------HHHHHHHHHHHHHHCC-CcEEEEEe-------CCcHHHHHHHHcCCCCEEEEcC
Confidence 568888874 111 2355677888888774 24555554 4578999999999999998743
Q ss_pred EEecCccceeeccccceecceEEEEecccCCcCcceeeccCchhHHHHHHHHHHHHHHHhhhhhcccCCCCCCCCcccch
Q 002211 565 AIVTNRTKAVDFTQPYIESGLVVVAPVRKLNSSAWAFLRPFTPLMWAVTGVFFLVVGTVVWILEHRLNDEFRGPPRKQIV 644 (953)
Q Consensus 565 ~~t~~r~~~vdft~p~~~~~~~~~v~~~~~~~~~~~~l~PF~~~vW~~i~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~ 644 (953)
.. ....+. ..++....+++++++..+..
T Consensus 62 ~~---~~~~~~-~~~l~~~~~~~v~~~~~pl~------------------------------------------------ 89 (219)
T 3jv9_A 62 PF---QEPGIV-TEPLYDEPFFVIVPKGHSFE------------------------------------------------ 89 (219)
T ss_dssp SC---CCTTEE-EEEEEEEEEEEEEETTCGGG------------------------------------------------
T ss_pred CC---CCCCee-EEEeeeceEEEEEeCCCCcc------------------------------------------------
Confidence 22 122232 46777888899888765211
Q ss_pred hhHHHHHHHhhccccCCcccchhHHHHHHHHHHHHHhhhhcccceeeeeeeccccCCCCChHHhhhCCCe-EEEEeCchH
Q 002211 645 TVLWFSFSTMFFAHRENTVSTLGRVVLIIWLFVVLIITSSYTASLTSILTVQQLSSPIKGIDTLMTSNDR-VGYQVGSFA 723 (953)
Q Consensus 645 ~~~~~~~~~l~~~~~~~~~s~~~R~l~~~w~~~~lil~~~Yta~L~s~Lt~~~~~~~I~sl~dL~~~~~~-ig~~~~s~~ 723 (953)
....-+++||. +.+ +....++..
T Consensus 90 ------------------------------------------------------~~~~~~~~~L~--~~~~i~~~~~~~~ 113 (219)
T 3jv9_A 90 ------------------------------------------------------ELDAVSPRMLG--EEQVLLLTEGNCM 113 (219)
T ss_dssp ------------------------------------------------------TSSSCCSSTTS--SSCEEEECTTCHH
T ss_pred ------------------------------------------------------cCCCCCHHHhc--CCcEEEecCCccH
Confidence 02334678886 444 444455555
Q ss_pred HHHHHHhhCC--------CccceEeCCCHHHHHHHHHcCCcEEEEccchhHHHHHhcCcceEEeCC--ccccCccEEEec
Q 002211 724 ENYLIEELSI--------PKSRLVALGSPEEYAIALENRTVAAVVDERPYIDLFLSDHCQFSVRGQ--EFTKSGWGFAFP 793 (953)
Q Consensus 724 ~~~l~~~~~~--------~~~~~~~~~~~~~~~~~l~~g~~~a~~~~~~~~~~~~~~~~~l~~~~~--~~~~~~~~~~~~ 793 (953)
...+.+.... ........++.+...+.+..|..-+++-+..... + +..++..+.. ......++++.+
T Consensus 114 ~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~v~~g~gi~~~p~~~~~~-~--~~~~l~~~~~~~~~~~~~~~l~~~ 190 (219)
T 3jv9_A 114 RDQVLSSCSELAAKQRIQGLTNTLQGSSINTIRHMVASGLAISVLPATALTE-N--DHMLFSIIPFEGTPPSRRVVLAYR 190 (219)
T ss_dssp HHHHHHHCSTTHHHHHHHTTTSSCEESSHHHHHHHHHHTSCEEEEEGGGCCT-T--CTTTEEEECCSSSCCEEEEEEEEE
T ss_pred HHHHHHHHHhhhhhhccCCCCceEEeCCHHHHHHHHHcCCcEEehhHHHHHh-c--cCCcEEEEecCCCCcceeEEEEEe
Confidence 5555443322 2334456789999999999988777776655444 2 3345555543 223346778888
Q ss_pred CCCcchHHHHHHHHhhh
Q 002211 794 RDSPLAIDMSTAILTLS 810 (953)
Q Consensus 794 k~spl~~~~n~~i~~l~ 810 (953)
++......+...+..+.
T Consensus 191 ~~~~~~~~~~~~~~~l~ 207 (219)
T 3jv9_A 191 RNFVRPKALSAMKAAIM 207 (219)
T ss_dssp TTCSCHHHHHHHHHHHH
T ss_pred cCccccHHHHHHHHHHH
Confidence 88665555544444443
No 169
>3ho7_A OXYR; beta-alpha-barrels, DNA-binding, transcription, transcriptio regulation; 1.58A {Porphyromonas gingivalis}
Probab=94.73 E-value=0.24 Score=49.31 Aligned_cols=84 Identities=13% Similarity=0.054 Sum_probs=58.2
Q ss_pred CcceEEEecCcccccccEEeeCCcceEEEeeHHHHHHHHHhCCCcccEEEeeCCCCCCCCChHHHHHHHHcCceeEEEec
Q 002211 484 GRQLRIGVPNRVSYRDFVFKVNGTDIVHGYCIDVFLAAVRLLPYAVPYKFIPYGDGHKNPTYSELINQITTGVFDAAVGD 563 (953)
Q Consensus 484 g~~lri~v~~~~~~~p~~~~~~~~~~~~G~~~dll~~la~~l~~~~~~~~~~~~~~~~n~~~~~~i~~l~~g~~Di~~~~ 563 (953)
.++|+||+.. .+. ..+..+++..+.++.+ .++++... ++..++++.|.+|++|+++..
T Consensus 10 ~g~l~Ig~~~--~~~------------~~~l~~~l~~~~~~~P-~v~i~~~~-------~~~~~~~~~l~~g~~Dl~i~~ 67 (232)
T 3ho7_A 10 TGRLNIAVLP--TIA------------PYLLPRVFPIWKKELA-GLEIHVSE-------MQTSRCLASLLSGEIDMAIIA 67 (232)
T ss_dssp CEEEEEEECT--TTH------------HHHHHHHHHHHHHHST-TEEEEEEE-------CCHHHHHHHHHHTSCSEEEES
T ss_pred ceeEEEEecc--ccc------------hhhhHHHHHHHHHHCC-CcEEEEEe-------CCHHHHHHHHHcCCCCEEEEc
Confidence 3578998874 111 2355678888888875 35666654 568899999999999999874
Q ss_pred EEEecCccceeeccccceecceEEEEeccc
Q 002211 564 IAIVTNRTKAVDFTQPYIESGLVVVAPVRK 593 (953)
Q Consensus 564 ~~~t~~r~~~vdft~p~~~~~~~~~v~~~~ 593 (953)
..... ..+. ..++....++++++...
T Consensus 68 ~~~~~---~~l~-~~~l~~~~~~~v~~~~h 93 (232)
T 3ho7_A 68 SKAET---EGLE-DDLLYYEEFLGYVSRCE 93 (232)
T ss_dssp SCCCC---TTEE-EEEEEEEEEEEEECTTS
T ss_pred CCCCC---CCeE-EEEecccCEEEEEcCCC
Confidence 43222 2232 46777888899888665
No 170
>4ab5_A Transcriptional regulator, LYSR family; transcription factors; 2.51A {Neisseria meningitidis serogroup B} PDB: 4ab6_A
Probab=94.69 E-value=0.32 Score=47.94 Aligned_cols=196 Identities=9% Similarity=-0.003 Sum_probs=116.1
Q ss_pred CcceEEEecCcccccccEEeeCCcceEEEeeHHHHHHHHHhCCCcccEEEeeCCCCCCCCChHHHHHHHHcCceeEEEec
Q 002211 484 GRQLRIGVPNRVSYRDFVFKVNGTDIVHGYCIDVFLAAVRLLPYAVPYKFIPYGDGHKNPTYSELINQITTGVFDAAVGD 563 (953)
Q Consensus 484 g~~lri~v~~~~~~~p~~~~~~~~~~~~G~~~dll~~la~~l~~~~~~~~~~~~~~~~n~~~~~~i~~l~~g~~Di~~~~ 563 (953)
.++||||+.. ... ..+..+++..+.++.+ .++++... ++..+++..|.+|++|+++..
T Consensus 7 ~g~l~Ig~~~--~~~------------~~~l~~~l~~f~~~~P-~i~i~i~~-------~~~~~~~~~l~~g~~Di~i~~ 64 (222)
T 4ab5_A 7 AGELRIAVEC--HTC------------FDWLMPAMGEFRPMWP-QVELDIVS-------GFQADPVGLLLQHRADLAIVS 64 (222)
T ss_dssp TEEEEEECCC--TTT------------HHHHHHHHHHHHHHST-TEEEEEEC-------CCCSCTHHHHHTTSCSEEEES
T ss_pred cceEEEEEeh--HHH------------HHHHHHHHHHHHHHCC-CcEEEEec-------CCHHHHHHHHHcCCcCEEEec
Confidence 3578998874 111 2355678888888875 25566654 456789999999999999874
Q ss_pred EEEecCccceeeccccceecceEEEEecccCCcCcceeeccCchhHHHHHHHHHHHHHHHhhhhhcccCCCCCCCCcccc
Q 002211 564 IAIVTNRTKAVDFTQPYIESGLVVVAPVRKLNSSAWAFLRPFTPLMWAVTGVFFLVVGTVVWILEHRLNDEFRGPPRKQI 643 (953)
Q Consensus 564 ~~~t~~r~~~vdft~p~~~~~~~~~v~~~~~~~~~~~~l~PF~~~vW~~i~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~ 643 (953)
.... ...+. ..++....+++++++..+...
T Consensus 65 ~~~~---~~~~~-~~~l~~~~~~~v~~~~~pl~~---------------------------------------------- 94 (222)
T 4ab5_A 65 EAEK---QNGIS-FQPLFAYEMVGICAPDHPLAA---------------------------------------------- 94 (222)
T ss_dssp CCCC---CTTEE-EEEEEEEEEEEEECTTSGGGG----------------------------------------------
T ss_pred CCCC---cCCeE-EEEeecCcEEEEecCCChhhc----------------------------------------------
Confidence 3222 22232 467778888888876652110
Q ss_pred hhhHHHHHHHhhccccCCcccchhHHHHHHHHHHHHHhhhhcccceeeeeeeccccCCCCChHHhhhCCCeEEE-EeCch
Q 002211 644 VTVLWFSFSTMFFAHRENTVSTLGRVVLIIWLFVVLIITSSYTASLTSILTVQQLSSPIKGIDTLMTSNDRVGY-QVGSF 722 (953)
Q Consensus 644 ~~~~~~~~~~l~~~~~~~~~s~~~R~l~~~w~~~~lil~~~Yta~L~s~Lt~~~~~~~I~sl~dL~~~~~~ig~-~~~s~ 722 (953)
...-+++||. +.++.. ..++.
T Consensus 95 --------------------------------------------------------~~~i~~~dL~--~~~~i~~~~~~~ 116 (222)
T 4ab5_A 95 --------------------------------------------------------KNVWTAEDFI--GETLITYPVPDE 116 (222)
T ss_dssp --------------------------------------------------------CSEECGGGGS--SSCEEECSSCGG
T ss_pred --------------------------------------------------------cCCcCHHHHc--CCCEEecCCCcH
Confidence 1223678886 444433 34443
Q ss_pred HHHHHHH---hhCCCccceEeCCCHHHHHHHHHcCCcEEEEccchhHHHHHhcCcceEEeCCccccCccEEEecCCCcch
Q 002211 723 AENYLIE---ELSIPKSRLVALGSPEEYAIALENRTVAAVVDERPYIDLFLSDHCQFSVRGQEFTKSGWGFAFPRDSPLA 799 (953)
Q Consensus 723 ~~~~l~~---~~~~~~~~~~~~~~~~~~~~~l~~g~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~k~spl~ 799 (953)
....+.+ ..+.... ....++.+.....+..|..-+++.+.....+.........-+........++++.+++.+..
T Consensus 117 ~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~v~~g~gi~~~p~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~~~~~~~~ 195 (222)
T 4ab5_A 117 MLDLPKKILIPKNINPP-RRHSELTIAIIQLVASRRGIAALPYWTVMPYLEKGYVVHRQITADGLQSKLYAAIRTEDTDK 195 (222)
T ss_dssp GCHHHHHTTGGGTCCCC-EEECSCHHHHHHHHHTTSCBEEEEHHHHHHHHHTTSCEEEEESTTCCEEEEEEEEEGGGTTC
T ss_pred HHHHHHHHHHHcCCCCC-eEecCCHHHHHHHHHcCCeEEEcchHHhHHHhhcCcEEEEecCCCccceEEEEEEeCCcccC
Confidence 3333322 3344434 66788999999999988776776554333333222222222333233556788888876655
Q ss_pred HHHHHHHHhhh
Q 002211 800 IDMSTAILTLS 810 (953)
Q Consensus 800 ~~~n~~i~~l~ 810 (953)
..+...+..+.
T Consensus 196 ~~~~~f~~~l~ 206 (222)
T 4ab5_A 196 SYLNNFCQIIR 206 (222)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 55555554443
No 171
>4h33_A LMO2059 protein; bilayers, KVLM, lipidic cubic phase (LCP), pore module, ION membrane protein; HET: OLC; 3.10A {Listeria monocytogenes} PDB: 4h37_A
Probab=94.67 E-value=0.048 Score=49.82 Aligned_cols=57 Identities=16% Similarity=0.334 Sum_probs=50.1
Q ss_pred ccchhhHHHHHHHhhccccC--CcccchhHHHHHHHHHHHHHhhhhcccceeeeeeecc
Q 002211 641 KQIVTVLWFSFSTMFFAHRE--NTVSTLGRVVLIIWLFVVLIITSSYTASLTSILTVQQ 697 (953)
Q Consensus 641 ~~~~~~~~~~~~~l~~~~~~--~~~s~~~R~l~~~w~~~~lil~~~Yta~L~s~Lt~~~ 697 (953)
.+..+++||++.++...|.. .|.+..+|++.++|.++++.+.+...+.+++.+....
T Consensus 42 ~~~~~a~y~~~~T~tTvGyGDi~P~t~~gr~~~~~~~~~g~~~~~~~~~~i~~~~~~~~ 100 (137)
T 4h33_A 42 NNYPDALWWAIVTATTVGYGDIVPVTPIGRILASIMMLFGIAFIGMITSTITNFFRCKK 100 (137)
T ss_dssp CSHHHHHHHHHHHHTTCCCSSSCCCSHHHHHHHHHHHHHHHHHHHHHHHHHHTTTTTTT
T ss_pred CCHHHHHHHHHHHHHcccCCCCCCCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35789999999999988744 7999999999999999999999999999998886543
No 172
>2xed_A Putative maleate isomerase; nicotinic acid catabolism, cofactor-independent CIS-trans isomerase; 1.95A {Nocardia farcinica} PDB: 2xec_A
Probab=94.13 E-value=0.56 Score=48.42 Aligned_cols=120 Identities=17% Similarity=0.076 Sum_probs=81.1
Q ss_pred HHHHHHhcCcEEEEccCChhhHH--------HHHHhhhhC-----CCcEEEeecCCCCCCCCCCCcEEEccCChHHHHHH
Q 002211 106 GALQFMETDTLAIVGPQSAVMAH--------VLSHLANEL-----QVPLLSFTALDPTLSPLQYPFFVQTAPNDLYLMSA 172 (953)
Q Consensus 106 ~a~~li~~~v~aiiGp~~S~~a~--------av~~v~~~~-----~vP~Is~~at~~~ls~~~~p~~fr~~p~d~~~~~a 172 (953)
++.+|.+.++.+|+-+.++.... ....+.+.. ++|+++. +.+
T Consensus 82 aa~~L~~~g~d~IviaCnta~~~~G~~~~~~~~~~l~~~~~~~~~~iPv~~~-------------------------~~A 136 (273)
T 2xed_A 82 CVLEIADAAPEVILYACLVAVMVGGPGEHHRVESAVAEQLATGGSQALVRSS-------------------------AGA 136 (273)
T ss_dssp HHHHHHTTCCSEEEECCHHHHHTTCTTHHHHHHHHHHHHHHHTTCCCEEEEH-------------------------HHH
T ss_pred HHHHHhhcCCCEEEECCChHHHhcccchhHHHHHHHHHHhhccCCCCCEecH-------------------------HHH
Confidence 44455555899998876665332 124444555 8898862 255
Q ss_pred HHHHHHHcCCcEEEEEEecCccccchHHHHHHHHHhcCcEEEEEEecCCCC-----CCChHHHHHHHHHHhcCCceEEEE
Q 002211 173 IAEMVSYFGWGEVIAIFNDDDQGRNGVTALGDKLAEIRCKISYKSALPPDQ-----SVTETDVRNELVKVRMMEARVIVV 247 (953)
Q Consensus 173 i~~~l~~~~w~~vaii~~d~~~g~~~~~~l~~~l~~~g~~v~~~~~~~~~~-----~~~~~d~~~~l~~i~~~~~~vii~ 247 (953)
+++.++..|-++|+++. .|.....+.+.+.+++.|+++.......... ..+...+...++++...++|+||+
T Consensus 137 ~~~al~~~g~~rvgvlt---p~~~~~~~~~~~~l~~~Gi~v~~~~~~~~~~~~~~g~~~~~~l~~~~~~l~~~gadaIvL 213 (273)
T 2xed_A 137 LVEGLRALDAQRVALVT---PYMRPLAEKVVAYLEAEGFTISDWRALEVADNTEVGCIPGEQVMAAARSLDLSEVDALVI 213 (273)
T ss_dssp HHHHHHHTTCCEEEEEE---CSCHHHHHHHHHHHHHTTCEEEEEEECCCCBHHHHHTCCHHHHHHHHHHSCCTTCSEEEE
T ss_pred HHHHHHHcCCCeEEEEc---CChhhhHHHHHHHHHHCCCEEeccccCCCccchhhcccCHHHHHHHHHHHhhCCCCEEEE
Confidence 66666778889999996 5666667788899999999987655443310 123456777777887778999999
Q ss_pred E-cchhh
Q 002211 248 H-GYSRT 253 (953)
Q Consensus 248 ~-~~~~~ 253 (953)
. |..-.
T Consensus 214 g~CT~l~ 220 (273)
T 2xed_A 214 SCAVQMP 220 (273)
T ss_dssp ESSSSSC
T ss_pred cCCCCcc
Confidence 8 77543
No 173
>3oxn_A Putative transcriptional regulator, LYSR family; structural genomics, PSI-2, protein structure initiative; 2.70A {Vibrio parahaemolyticus}
Probab=94.00 E-value=1.1 Score=44.88 Aligned_cols=193 Identities=10% Similarity=0.079 Sum_probs=114.1
Q ss_pred CcceEEEecCcccccccEEeeCCcceEEEeeHHHHHHHHHhCCCcccEEEeeCCCCCCCCChHHHHHHHHcCceeEEEec
Q 002211 484 GRQLRIGVPNRVSYRDFVFKVNGTDIVHGYCIDVFLAAVRLLPYAVPYKFIPYGDGHKNPTYSELINQITTGVFDAAVGD 563 (953)
Q Consensus 484 g~~lri~v~~~~~~~p~~~~~~~~~~~~G~~~dll~~la~~l~~~~~~~~~~~~~~~~n~~~~~~i~~l~~g~~Di~~~~ 563 (953)
.++||||+.. .. ...+...++..+.++.+ .+++.... ++..++++.|.+|++|+++..
T Consensus 18 ~g~l~Ig~~~--~~------------~~~~l~~~l~~f~~~~P-~i~l~~~~-------~~~~~~~~~l~~g~~Dl~i~~ 75 (241)
T 3oxn_A 18 DQTFTIATTD--YA------------MQTILPFALPRIYQEAP-NVSFNFLP-------LQHDRLSDQLTYEGADLAICR 75 (241)
T ss_dssp CCEEEEEECS--HH------------HHHTHHHHHHHHHHHCT-TCEEEEEE-------CCGGGHHHHHHTSCCSEEEEC
T ss_pred CceEEEEech--HH------------HHHHHHHHHHHHHHHCC-CCEEEEEE-------CCcccHHHHHHcCCCCEEEec
Confidence 4679999874 11 12456678888888875 25566554 567899999999999999873
Q ss_pred EEEecCccceeeccccceecceEEEEecccCCcCcceeeccCchhHHHHHHHHHHHHHHHhhhhhcccCCCCCCCCcccc
Q 002211 564 IAIVTNRTKAVDFTQPYIESGLVVVAPVRKLNSSAWAFLRPFTPLMWAVTGVFFLVVGTVVWILEHRLNDEFRGPPRKQI 643 (953)
Q Consensus 564 ~~~t~~r~~~vdft~p~~~~~~~~~v~~~~~~~~~~~~l~PF~~~vW~~i~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~ 643 (953)
. ......+. ..++....+++++++..+..
T Consensus 76 ~---~~~~~~~~-~~~l~~~~~~~v~~~~hpl~----------------------------------------------- 104 (241)
T 3oxn_A 76 P---TGPVEPLR-SEILGRVGVLCLLSKQHPLA----------------------------------------------- 104 (241)
T ss_dssp C---SSCCTTEE-EEEEECCCEEEEEETTSGGG-----------------------------------------------
T ss_pred C---CCCCccce-eEEeecccEEEEEeCCCCcc-----------------------------------------------
Confidence 2 22222333 46778888999988766210
Q ss_pred hhhHHHHHHHhhccccCCcccchhHHHHHHHHHHHHHhhhhcccceeeeeeeccccCCCCChHHhhhCCCeEE-EEeCch
Q 002211 644 VTVLWFSFSTMFFAHRENTVSTLGRVVLIIWLFVVLIITSSYTASLTSILTVQQLSSPIKGIDTLMTSNDRVG-YQVGSF 722 (953)
Q Consensus 644 ~~~~~~~~~~l~~~~~~~~~s~~~R~l~~~w~~~~lil~~~Yta~L~s~Lt~~~~~~~I~sl~dL~~~~~~ig-~~~~s~ 722 (953)
...-+++||. +.++- +..+..
T Consensus 105 --------------------------------------------------------~~~i~~~dL~--~~~~i~~~~~~~ 126 (241)
T 3oxn_A 105 --------------------------------------------------------NQEMSLDDYL--SHPHAMIAISDG 126 (241)
T ss_dssp --------------------------------------------------------GSCCCHHHHH--TSEEEECSCCHH
T ss_pred --------------------------------------------------------cCCCCHHHHh--cCCeEEEecCCC
Confidence 1234689997 55543 344444
Q ss_pred HHHHHHHhhC--CCccceEeCCCHHHHHHHHHcCCcEEEEccchhHHHHHhcCcceEEeC--CccccCccEEEecCCCcc
Q 002211 723 AENYLIEELS--IPKSRLVALGSPEEYAIALENRTVAAVVDERPYIDLFLSDHCQFSVRG--QEFTKSGWGFAFPRDSPL 798 (953)
Q Consensus 723 ~~~~l~~~~~--~~~~~~~~~~~~~~~~~~l~~g~~~a~~~~~~~~~~~~~~~~~l~~~~--~~~~~~~~~~~~~k~spl 798 (953)
....+.+.+. .........++.+.....+..|.--+++-+.....+. .. .++..+. .......++++.+|+.+.
T Consensus 127 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~g~giailp~~~~~~~~-~~-~~l~~~~~~~~~~~~~~~l~~~~~~~~ 204 (241)
T 3oxn_A 127 VKALIEQALIDKPQRKMVLRAYHLEAALAIVDTLPIIITVPADLAYLVA-ER-YDLVVKPLPFQFTPFDYSMIWHARCEH 204 (241)
T ss_dssp HHHHHHHHSTTSCCCEEEEECSSTHHHHHHC--CCCEEEEEHHHHHHHH-HH-TTEEEECCSSCCCCCCEEEEEEGGGTT
T ss_pred ccchhHHHHHhhccceEEEECCcHHHHHHHHhCCCeEEEcHHHHHHHhc-cc-CCceEeCCCCCCCcccEEEEEcCcCCC
Confidence 4444433222 2223335678888999999888777776554433332 21 3455544 233345678888887654
Q ss_pred hHHHHHHHHhh
Q 002211 799 AIDMSTAILTL 809 (953)
Q Consensus 799 ~~~~n~~i~~l 809 (953)
.......+..+
T Consensus 205 ~~~~~~~~~~l 215 (241)
T 3oxn_A 205 SPAQEWLRSVV 215 (241)
T ss_dssp CHHHHHHHHHH
T ss_pred CchhHHHHHHH
Confidence 44444443333
No 174
>1us5_A Putative GLUR0 ligand binding core; receptor, membrane protein, glutamate receptor, L-glutamate; HET: GLU; 1.5A {Thermus thermophilus} SCOP: c.94.1.1 PDB: 1us4_A*
Probab=93.76 E-value=0.17 Score=53.64 Aligned_cols=61 Identities=20% Similarity=0.185 Sum_probs=42.4
Q ss_pred CCCChHHhhhCCCeEEE-EeCchHHHHH---HHhhCCCccce--EeCCCHHHHHHHHHcCCcEEEEccc
Q 002211 701 PIKGIDTLMTSNDRVGY-QVGSFAENYL---IEELSIPKSRL--VALGSPEEYAIALENRTVAAVVDER 763 (953)
Q Consensus 701 ~I~sl~dL~~~~~~ig~-~~~s~~~~~l---~~~~~~~~~~~--~~~~~~~~~~~~l~~g~~~a~~~~~ 763 (953)
+|++++||. ++++++ ..|+..+..+ .+..+.....+ ..+.+..+.+.++..|++|+.+...
T Consensus 122 ~i~sl~dL~--g~~i~~~~~gs~~~~~~~~~l~~~G~~~~~v~~~~~~~~~~~~~al~~G~vda~~~~~ 188 (314)
T 1us5_A 122 GIRTVADLK--GKRVVVGDVGSGTEQNARQILEAYGLTFDDLGQAIRVSASQGIQLMQDKRADALFYTV 188 (314)
T ss_dssp SCSSGGGGT--TSEEECCCTTCHHHHHHHHHHHHTTCCGGGSSEEECCCHHHHHHHHHTTSCSEEEEEE
T ss_pred CCCcHHHhC--CCEeecCCCCchHHHHHHHHHHHcCCCHHHcCceecCCHHHHHHHHHcCCccEEEEcc
Confidence 678999997 778887 4566443322 23455543333 4567889999999999999988653
No 175
>3ldc_A Calcium-gated potassium channel MTHK; transmembrane, ION channel, open conformation, IO transport; 1.45A {Methanothermobacter thermautotrophicusorganism_taxid} PDB: 3lde_A 4hyo_A 4hz3_D 3r65_A 3ous_A 3ldd_A
Probab=93.56 E-value=0.12 Score=42.35 Aligned_cols=52 Identities=13% Similarity=0.133 Sum_probs=45.5
Q ss_pred cchhhHHHHHHHhhccccC--CcccchhHHHHHHHHHHHHHhhhhcccceeeee
Q 002211 642 QIVTVLWFSFSTMFFAHRE--NTVSTLGRVVLIIWLFVVLIITSSYTASLTSIL 693 (953)
Q Consensus 642 ~~~~~~~~~~~~l~~~~~~--~~~s~~~R~l~~~w~~~~lil~~~Yta~L~s~L 693 (953)
+..+++|+++.++...|.. .|.+..+|++.++|.++++.+.+...+++++.+
T Consensus 28 ~~~~a~yf~~~T~tTvGyGdi~P~t~~~r~~~~~~~~~G~~~~~~~~~~i~~~l 81 (82)
T 3ldc_A 28 SWTVSLYWTFVTIATVGYGDYSPHTPLGMYFTCTLIVLGIGTFAVAVERLLEFL 81 (82)
T ss_dssp CHHHHHHHHHHHHTTCCCCSSCCCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHhcccCCCCCCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5889999999999988743 789999999999999999999999888876653
No 176
>4gx0_A TRKA domain protein; membrane protein, ION channel, ADP binding, NAD binding, MEM transport protein; HET: MAL GLC; 2.60A {Geobacter sulfurreducens} PDB: 4gx1_A* 4gx2_A* 4gx5_A 4gvl_A*
Probab=93.35 E-value=0.21 Score=58.02 Aligned_cols=124 Identities=10% Similarity=0.132 Sum_probs=80.4
Q ss_pred cchhhHHHHHHHhhccccC--CcccchhHHHHHHHHHHHHHhhhhcccc-eeeeeeeccccCCCC-----Ch-HHhhhCC
Q 002211 642 QIVTVLWFSFSTMFFAHRE--NTVSTLGRVVLIIWLFVVLIITSSYTAS-LTSILTVQQLSSPIK-----GI-DTLMTSN 712 (953)
Q Consensus 642 ~~~~~~~~~~~~l~~~~~~--~~~s~~~R~l~~~w~~~~lil~~~Yta~-L~s~Lt~~~~~~~I~-----sl-~dL~~~~ 712 (953)
.+..++||++.++...|.. .|.+..+|++.++|.++++.+.....+. ++++++.+.++.... .. +.+ .
T Consensus 51 ~~~~~~y~~~~t~tTvGygd~~p~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~ 127 (565)
T 4gx0_A 51 SFMAGIYWTITVMTTLGFGDITFESDAGYLFASIVTVSGVIFLDIILPFGFVSMFLAPWIERRLRYHPTIELPDDT---R 127 (565)
T ss_dssp CHHHHHHHHHHHHTTCCCCSSCCCSHHHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHTSCCCBCCCCTTC---C
T ss_pred chhhhhheeeeeeeeecCCCcCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccccc---C
Confidence 6889999999999988754 6888999999999999999888877776 555543322221111 11 222 2
Q ss_pred CeEEEE-eCchHHHHHHHhhCCCccceEeCCCHHHHHHHHHcC-CcEEEEccchhHHHH
Q 002211 713 DRVGYQ-VGSFAENYLIEELSIPKSRLVALGSPEEYAIALENR-TVAAVVDERPYIDLF 769 (953)
Q Consensus 713 ~~ig~~-~~s~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~g-~~~a~~~~~~~~~~~ 769 (953)
.++.+. .|.+..... +.+......++..+..++..+.+.+. +..++.++...-+.+
T Consensus 128 ~hviI~G~g~~g~~la-~~L~~~~~~vvvid~~~~~~~~~~~~~~~~~i~Gd~~~~~~L 185 (565)
T 4gx0_A 128 GHILIFGIDPITRTLI-RKLESRNHLFVVVTDNYDQALHLEEQEGFKVVYGSPTDAHVL 185 (565)
T ss_dssp SCEEEESCCHHHHHHH-HHTTTTTCCEEEEESCHHHHHHHHHSCSSEEEESCTTCHHHH
T ss_pred CeEEEECCChHHHHHH-HHHHHCCCCEEEEECCHHHHHHHHHhcCCeEEEeCCCCHHHH
Confidence 234443 444444443 44444445666677777777777777 788888876544443
No 177
>3ouf_A Potassium channel protein; ION channel, membrane, membrane protein; 1.55A {Bacillus cereus} PDB: 3t4z_A 3tcu_A 3t1c_A 3tet_A 3t4d_A 3t2m_A 3e86_A 3e83_A 3e89_A 3e8b_A 3e8f_A 3e8g_A 3e8h_A 3k0d_A 3k0g_A 3k06_A 3k08_A 3k04_A 3k03_A
Probab=93.16 E-value=0.079 Score=45.06 Aligned_cols=58 Identities=14% Similarity=0.334 Sum_probs=50.9
Q ss_pred cchhhHHHHHHHhhccccC--CcccchhHHHHHHHHHHHHHhhhhcccceeeeeeecccc
Q 002211 642 QIVTVLWFSFSTMFFAHRE--NTVSTLGRVVLIIWLFVVLIITSSYTASLTSILTVQQLS 699 (953)
Q Consensus 642 ~~~~~~~~~~~~l~~~~~~--~~~s~~~R~l~~~w~~~~lil~~~Yta~L~s~Lt~~~~~ 699 (953)
...+++||++.++...|.. .|.+..+|++.++|.++++.+.+...+.+++.++.+...
T Consensus 32 ~~~~a~yf~~~T~tTvGyGdi~P~t~~gr~~~~~~~~~G~~~~~~~i~~i~~~~~~~~~~ 91 (97)
T 3ouf_A 32 RPIDALYFSVVTLTTVGYGDFSPQTDFGKIFTILYIFIGIGLVFGFIHKLAVNVQLPSIL 91 (97)
T ss_dssp CHHHHHHHHHHHHTTCCCCSSCCCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHH
T ss_pred CHHHHHHHHHHHHHccCCCCCCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHH
Confidence 5889999999999988744 789999999999999999999999999998888765543
No 178
>1atg_A MODA, periplasmic molybdate-binding protein; tungstate, ABC transporter; 1.20A {Azotobacter vinelandii} SCOP: c.94.1.1
Probab=92.77 E-value=0.46 Score=47.20 Aligned_cols=71 Identities=11% Similarity=-0.028 Sum_probs=44.6
Q ss_pred eHHHHHHHHHhCCCcccEEEeeCCCCCCCCChHHHHHHHHcCc-eeEEEecEEEecC---ccceee--ccccceecceEE
Q 002211 514 CIDVFLAAVRLLPYAVPYKFIPYGDGHKNPTYSELINQITTGV-FDAAVGDIAIVTN---RTKAVD--FTQPYIESGLVV 587 (953)
Q Consensus 514 ~~dll~~la~~l~~~~~~~~~~~~~~~~n~~~~~~i~~l~~g~-~Di~~~~~~~t~~---r~~~vd--ft~p~~~~~~~~ 587 (953)
.-++++.+.++-|.++++.. ++-.+++.+|.+|+ +|+++..-....+ ....+. -..|+....+++
T Consensus 14 l~~~~~~F~~~p~i~v~~~~---------~~s~~l~~~l~~g~~~Dv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vl 84 (231)
T 1atg_A 14 LEQLAGQFAKQTGHAVVISS---------GSSGPVYAQIVNGAPYNVFFSADEKSPEKLDNQGFALPGSRFTYAIGKLVL 84 (231)
T ss_dssp HHHHHHHHHHHHCCCEEEEE---------ECHHHHHHHHHTTCCCSEEECSSSHHHHHHHHTTCBCTTCCEEEEECCEEE
T ss_pred HHHHHHHHHhccCCeEEEEE---------CCcHHHHHHHHcCCCCCEEEeCChhHHHHHHhcCCCcCCceeEeeeeeEEE
Confidence 34677777777776655543 34688999999998 9997652211111 111111 246788888888
Q ss_pred EEeccc
Q 002211 588 VAPVRK 593 (953)
Q Consensus 588 ~v~~~~ 593 (953)
++++..
T Consensus 85 v~~~~~ 90 (231)
T 1atg_A 85 WSAKPG 90 (231)
T ss_dssp EESSTT
T ss_pred EEcCCC
Confidence 887665
No 179
>3r26_A Molybdate-binding periplasmic protein; protein binding; 1.70A {Escherichia coli} SCOP: c.94.1.1 PDB: 3axf_A 1amf_A 1wod_A
Probab=92.74 E-value=1.2 Score=44.92 Aligned_cols=114 Identities=11% Similarity=0.060 Sum_probs=64.5
Q ss_pred CCCChHHhhhCCCeEEEEe------CchHHHHHHHhhCCC---ccceEeCCCHHHHHHHHHcCCcEEEEccchhHHHHHh
Q 002211 701 PIKGIDTLMTSNDRVGYQV------GSFAENYLIEELSIP---KSRLVALGSPEEYAIALENRTVAAVVDERPYIDLFLS 771 (953)
Q Consensus 701 ~I~sl~dL~~~~~~ig~~~------~s~~~~~l~~~~~~~---~~~~~~~~~~~~~~~~l~~g~~~a~~~~~~~~~~~~~ 771 (953)
.++++.||.+ +.+|++.+ |.+....|+ ..+.. ..+++...+..+....+.+|+.|+.+.-......
T Consensus 106 ~~~~l~~l~~-~~~iai~~p~~~p~G~~a~~~l~-~~g~~~~l~~~~~~~~~~~~~~~~v~~Ge~d~gi~~~s~a~~--- 180 (237)
T 3r26_A 106 SKTNWTSLLN-GGRLAVGDPEHVPAGIYAKEALQ-KLGAWDTLSPKLAPAEDVRGALALVERNEAPLGIVYGSDAVA--- 180 (237)
T ss_dssp TTCCHHHHHT-TCCEEEECTTTCHHHHHHHHHHH-HTTCHHHHGGGEEEESSHHHHHHHHHTTSSSEEEEEHHHHHH---
T ss_pred chHhHHHhcC-CCeEEEeCCCCCChHHHHHHHHH-HcCCHHHhhhcEEecCCHHHHHHHHHcCCCCEEEEEeccccc---
Confidence 3456777664 45788764 334455553 33321 2356666788899999999999998875443321
Q ss_pred cCcceEE---eCCc-cccCccEEEecCCCcchHHHHHHHHhhhccccHHHHHHHh
Q 002211 772 DHCQFSV---RGQE-FTKSGWGFAFPRDSPLAIDMSTAILTLSENGELQRIHDKW 822 (953)
Q Consensus 772 ~~~~l~~---~~~~-~~~~~~~~~~~k~spl~~~~n~~i~~l~e~G~~~~~~~~w 822 (953)
..++.+ +++. .....+.+++.|+++- +.-.+.+.-|. +..-+++..++
T Consensus 181 -~~~~~~v~~~P~~~~~~~~~~~ai~k~~~~-~~A~~Fi~fl~-S~eaq~i~~~~ 232 (237)
T 3r26_A 181 -SKGVKVVATFPEDSHKKVEYPVAVVEGHNN-ATVKAFYDYLK-GPQAAEIFKRY 232 (237)
T ss_dssp -CSSEEEEEECCGGGSCCEEEEEEEBTTCCS-HHHHHHHHHHT-SHHHHHHHHHT
T ss_pred -CCCCeEEEECCcccCCeeeeeEEEEcCCCC-HHHHHHHHHHc-CHHHHHHHHHc
Confidence 223333 3332 2234567888898875 33333443333 33345555554
No 180
>3pjs_K KCSA, voltage-gated potassium channel; ION channel, conducts K+ IONS, cell membrane, transport PROT; 3.80A {Streptomyces lividans} PDB: 1f6g_A
Probab=92.36 E-value=0.0096 Score=56.68 Aligned_cols=60 Identities=20% Similarity=0.224 Sum_probs=52.3
Q ss_pred CCcccchhhHHHHHHHhhccccC--CcccchhHHHHHHHHHHHHHhhhhcccceeeeeeecc
Q 002211 638 PPRKQIVTVLWFSFSTMFFAHRE--NTVSTLGRVVLIIWLFVVLIITSSYTASLTSILTVQQ 697 (953)
Q Consensus 638 ~~~~~~~~~~~~~~~~l~~~~~~--~~~s~~~R~l~~~w~~~~lil~~~Yta~L~s~Lt~~~ 697 (953)
+...++.+++||++.++...|.. .|.+..+|++.++|.++++++.+...+.+++.++...
T Consensus 63 ~~~~~~~~a~yf~~~T~tTvGyGDi~P~t~~~r~~~~~~~l~G~~~~~~~~~~i~~~~~~~~ 124 (166)
T 3pjs_K 63 AQLITYPRALWWSVETATTVGYGDLYPVTLWGRLVAVVVMVAGITSFGLVTAALATWFVGQE 124 (166)
T ss_dssp CCCCSTTTTTTTTHHHHSCCCCSSSCCCSSTTTTTTHHHHHHHHHHHHHHHTTSSSSSSSSH
T ss_pred cccCCHHHHHHHHHHHhccccCCCCCCCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33456889999999999988744 7999999999999999999999999999999987543
No 181
>2fyi_A HTH-type transcriptional regulator CBL; Lys-R family, cofactor-binding DO cysteine biosynthesis; 2.80A {Escherichia coli K12} SCOP: c.94.1.1
Probab=92.28 E-value=3.8 Score=40.39 Aligned_cols=196 Identities=10% Similarity=0.059 Sum_probs=117.5
Q ss_pred CcceEEEecCcccccccEEeeCCcceEEEeeHHHHHHHHHhCCCcccEEEeeCCCCCCCCChHHHHHHHHcCceeEEEec
Q 002211 484 GRQLRIGVPNRVSYRDFVFKVNGTDIVHGYCIDVFLAAVRLLPYAVPYKFIPYGDGHKNPTYSELINQITTGVFDAAVGD 563 (953)
Q Consensus 484 g~~lri~v~~~~~~~p~~~~~~~~~~~~G~~~dll~~la~~l~~~~~~~~~~~~~~~~n~~~~~~i~~l~~g~~Di~~~~ 563 (953)
.++||||+.. .. ...+..+++..+.++.+ .++++... ++..++++.|.+|++|+++..
T Consensus 13 ~g~lrIg~~~--~~------------~~~~l~~~l~~f~~~~P-~v~l~l~~-------~~~~~~~~~l~~g~~Dl~i~~ 70 (228)
T 2fyi_A 13 SGVLTIATTH--TQ------------ARYSLPEVIKAFRELFP-EVRLELIQ-------GTPQEIATLLQNGEADIGIAS 70 (228)
T ss_dssp CEEEEEEECH--HH------------HHHTHHHHHHHHHHHCT-TEEEEEEE-------CCHHHHHHHHHHTSCSEEEES
T ss_pred cceEEEeecc--ch------------HHHHHHHHHHHHHHHCC-CcEEEEEe-------CCHHHHHHHHHcCCccEEEEe
Confidence 3579998864 11 12456778889998886 36666665 568899999999999998863
Q ss_pred EEEecCccceeeccccceecceEEEEecccCCcCcceeeccCchhHHHHHHHHHHHHHHHhhhhhcccCCCCCCCCcccc
Q 002211 564 IAIVTNRTKAVDFTQPYIESGLVVVAPVRKLNSSAWAFLRPFTPLMWAVTGVFFLVVGTVVWILEHRLNDEFRGPPRKQI 643 (953)
Q Consensus 564 ~~~t~~r~~~vdft~p~~~~~~~~~v~~~~~~~~~~~~l~PF~~~vW~~i~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~ 643 (953)
.. ......+. ..++....++++++...+..
T Consensus 71 ~~--~~~~~~l~-~~~l~~~~~~~v~~~~hpla----------------------------------------------- 100 (228)
T 2fyi_A 71 ER--LSNDPQLV-AFPWFRWHHSLLVPHDHPLT----------------------------------------------- 100 (228)
T ss_dssp SS--STTCTTEE-EEEEEEECEEEEEETTCGGG-----------------------------------------------
T ss_pred cc--cCCCCCce-EEEeeecceEEEecCCCCcc-----------------------------------------------
Confidence 11 11112232 35777888888888655210
Q ss_pred hhhHHHHHHHhhccccCCcccchhHHHHHHHHHHHHHhhhhcccceeeeeeeccccCCCCChHHhhhCCCe-EEEEeCch
Q 002211 644 VTVLWFSFSTMFFAHRENTVSTLGRVVLIIWLFVVLIITSSYTASLTSILTVQQLSSPIKGIDTLMTSNDR-VGYQVGSF 722 (953)
Q Consensus 644 ~~~~~~~~~~l~~~~~~~~~s~~~R~l~~~w~~~~lil~~~Yta~L~s~Lt~~~~~~~I~sl~dL~~~~~~-ig~~~~s~ 722 (953)
....-+++||. +.+ |....++.
T Consensus 101 -------------------------------------------------------~~~~i~~~dL~--~~~~i~~~~~~~ 123 (228)
T 2fyi_A 101 -------------------------------------------------------QISPLTLESIA--KWPLITYRQGIT 123 (228)
T ss_dssp -------------------------------------------------------TSSSCCHHHHT--TSCEEEECTTST
T ss_pred -------------------------------------------------------ccCccCHHHHc--CCCeEEecCCcc
Confidence 02235689997 444 44444443
Q ss_pred HHHHHH---HhhCCCccceEeCCCHHHHHHHHHcCCcEEEEccchhHHHHHhcCcceEEeCC--ccccCccEEEecCCCc
Q 002211 723 AENYLI---EELSIPKSRLVALGSPEEYAIALENRTVAAVVDERPYIDLFLSDHCQFSVRGQ--EFTKSGWGFAFPRDSP 797 (953)
Q Consensus 723 ~~~~l~---~~~~~~~~~~~~~~~~~~~~~~l~~g~~~a~~~~~~~~~~~~~~~~~l~~~~~--~~~~~~~~~~~~k~sp 797 (953)
....+. ...+.........++.+.....+..|.--+++-+... ... ...++..+.- ......++++.+++.+
T Consensus 124 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lv~~G~Gia~lp~~~~-~~~--~~~~l~~~~~~~~~~~~~~~l~~~~~~~ 200 (228)
T 2fyi_A 124 GRSRIDDAFARKGLLADIVLSAQDSDVIKTYVALGLGIGLVAEQSS-GEQ--EEENLIRLDTRHLFDANTVWLGLKRGQL 200 (228)
T ss_dssp THHHHHHHHHHTTCCCCEEEEESSHHHHHHHHHHTSCEEEEEGGGG-STT--CCTTEEEECCTTTSCCEEEEEEEETTCC
T ss_pred HHHHHHHHHHHcCCCcceEEEeCCHHHHHHHHHhCCCEEEeehHhh-hhc--ccCCeEEEECCCcccceEEEEEEeCCCc
Confidence 333222 2334433344567888889999988776677655322 111 1234555532 2223457788888877
Q ss_pred chHHHHHHHHhhhc
Q 002211 798 LAIDMSTAILTLSE 811 (953)
Q Consensus 798 l~~~~n~~i~~l~e 811 (953)
+...+...+..+.+
T Consensus 201 ~~~~~~~f~~~l~~ 214 (228)
T 2fyi_A 201 QRNYVWRFLELCNA 214 (228)
T ss_dssp BCHHHHHHHHHHCS
T ss_pred CCHHHHHHHHHHHH
Confidence 76666666655544
No 182
>3gzg_A Molybdate-binding periplasmic protein; permease; molybdate complex, mutant K127S, metal binding protein; 1.55A {Xanthomonas axonopodis PV} PDB: 2h5y_A
Probab=92.19 E-value=0.99 Score=46.04 Aligned_cols=115 Identities=15% Similarity=0.097 Sum_probs=62.1
Q ss_pred CCCC--hHHhhhCCCeEEEEe------CchHHHHHHHhhCCC---ccceEeCCCHHHHHHHHHcCCcEEEEccchhHHHH
Q 002211 701 PIKG--IDTLMTSNDRVGYQV------GSFAENYLIEELSIP---KSRLVALGSPEEYAIALENRTVAAVVDERPYIDLF 769 (953)
Q Consensus 701 ~I~s--l~dL~~~~~~ig~~~------~s~~~~~l~~~~~~~---~~~~~~~~~~~~~~~~l~~g~~~a~~~~~~~~~~~ 769 (953)
.|++ +.++...+.+|++.+ |.+....|+ ..+.. ..+++..++..+....+.+|+.|+.+.-...+.
T Consensus 119 ~i~~~dl~~l~~~~~~iai~dP~~~p~G~~a~~~l~-~~g~~~~l~~~~v~~~~~~~~~~~v~~Gead~giv~~s~a~-- 195 (253)
T 3gzg_A 119 PRAPGAIAKALGENGRLAVGQTASVPAGSYAAAALR-KLGQWDSVSNRLAESESVRAALMLVSRGEAPLGIVYGSDAR-- 195 (253)
T ss_dssp TTSTTHHHHHTTTTCCEEEECTTTSHHHHHHHHHHH-HTTCHHHHTTSEEEESSHHHHHHHHHTTSSSEEEEEHHHHH--
T ss_pred CCCHHHHHHhhcCCCEEEEeCCCCCchHHHHHHHHH-HcCcHHHHhhceeecCCHHHHHHHHHcCCCCEEEEEhhccc--
Confidence 3555 555543446788865 334445553 33321 235666788899999999999998887544332
Q ss_pred HhcCcceEEe---CCc-cccCccEEEecCCCcchHHHHHHHHhhhccccHHHHHHHh
Q 002211 770 LSDHCQFSVR---GQE-FTKSGWGFAFPRDSPLAIDMSTAILTLSENGELQRIHDKW 822 (953)
Q Consensus 770 ~~~~~~l~~~---~~~-~~~~~~~~~~~k~spl~~~~n~~i~~l~e~G~~~~~~~~w 822 (953)
. ..++.++ ++. ..+..+.+++.|++. .+.-.+.+..| .+..-+++..+|
T Consensus 196 -~-~~~v~~v~~~P~~~~~~i~~~~ai~k~~~-~~~A~~Fi~fl-~S~eaq~i~~~~ 248 (253)
T 3gzg_A 196 -A-DAKVRVVATFPDDSHDAIVYPVAALKNSN-NPATAAFVSWL-GSKPAKAIFARR 248 (253)
T ss_dssp -H-CTTEEEEEECCGGGSCCEEEEEEECTTCC-CTTHHHHHHHT-TSHHHHHHHHHT
T ss_pred -c-CCCceEEEECCcccCceeEEEEEEECCCC-hHHHHHHHHHH-cCHHHHHHHHHc
Confidence 1 2334443 332 223456788888752 12222233222 333445555554
No 183
>2zzv_A ABC transporter, solute-binding protein; periplasmic substrate binding protein, calcium, lactate, trap transporter, transport protein; 1.40A {Thermus thermophilus} PDB: 2zzw_A 2zzx_A
Probab=92.18 E-value=0.67 Score=50.19 Aligned_cols=59 Identities=19% Similarity=0.220 Sum_probs=45.2
Q ss_pred CCCCChHHhhhCCCeEEEEeCchHHHHHHHhhCCCccceEeCCCHHHHHHHHHcCCcEEEEccchhH
Q 002211 700 SPIKGIDTLMTSNDRVGYQVGSFAENYLIEELSIPKSRLVALGSPEEYAIALENRTVAAVVDERPYI 766 (953)
Q Consensus 700 ~~I~sl~dL~~~~~~ig~~~~s~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~g~~~a~~~~~~~~ 766 (953)
.+|++++||. |++|++. +......+ +.++. ..+.+ ...|...+|++|.+|+.....+..
T Consensus 164 ~pI~s~~DLk--G~kirv~-~~~~~~~~-~~lGa---~pv~~-~~~e~~~ALq~G~VDg~~~~~~~~ 222 (361)
T 2zzv_A 164 KPIRRFEDFK--GVKLRVP-GGMIAEVF-AAAGA---STVLL-PGGEVYPALERGVIDAADFVGPAV 222 (361)
T ss_dssp SCCCSGGGGT--TCEEECC-SHHHHHHH-HHTTC---EEECC-CGGGHHHHHHTTSCSEEECSCHHH
T ss_pred CCcCChHHhC--CCEEeec-CHHHHHHH-HHcCC---eeeec-ChHHHHHHHHcCCcceeecCCcch
Confidence 6899999996 9999988 55555666 45553 33333 678899999999999998776665
No 184
>2hxr_A HTH-type transcriptional regulator CYNR; CYNR transcriptional regulator LYSR struc genomics, PSI-2, protein structure initiative; 2.05A {Escherichia coli} PDB: 3hfu_A
Probab=92.16 E-value=4.2 Score=40.22 Aligned_cols=83 Identities=11% Similarity=0.218 Sum_probs=56.1
Q ss_pred cceEEEecCcccccccEEeeCCcceEEEeeHHHHHHHHHhCCCcccEEEeeCCCCCCCCChHHHHHHHHcCceeEEEecE
Q 002211 485 RQLRIGVPNRVSYRDFVFKVNGTDIVHGYCIDVFLAAVRLLPYAVPYKFIPYGDGHKNPTYSELINQITTGVFDAAVGDI 564 (953)
Q Consensus 485 ~~lri~v~~~~~~~p~~~~~~~~~~~~G~~~dll~~la~~l~~~~~~~~~~~~~~~~n~~~~~~i~~l~~g~~Di~~~~~ 564 (953)
++||||+.. .+ ...+...++..+.++.+ .++++... ++..++++.|.+|++|+++...
T Consensus 30 g~l~Ig~~~--~~------------~~~~l~~~l~~f~~~~P-~v~l~~~~-------~~~~~~~~~l~~g~~Dl~i~~~ 87 (238)
T 2hxr_A 30 GSLRIAVTP--TF------------TSYFIGPLMADFYARYP-SITLQLQE-------MSQEKIEDMLCRDELDVGIAFA 87 (238)
T ss_dssp -CEEEEECH--HH------------HTTTHHHHHHHHHHHCT-TSCEEEEE-------CCHHHHHHHHHTTSCSEEEEES
T ss_pred CeEEEeech--hh------------HHHHHHHHHHHHHHhCC-CcEEEEEE-------CCHHHHHHHHHcCCCcEEEEcC
Confidence 579998864 11 12456678888988886 35666665 5578999999999999988632
Q ss_pred EEecCccceeeccccceecceEEEEeccc
Q 002211 565 AIVTNRTKAVDFTQPYIESGLVVVAPVRK 593 (953)
Q Consensus 565 ~~t~~r~~~vdft~p~~~~~~~~~v~~~~ 593 (953)
......+. +.++....++++++...
T Consensus 88 ---~~~~~~l~-~~~l~~~~~~~v~~~~h 112 (238)
T 2hxr_A 88 ---PVHSPELE-AIPLLTESLALVVAQHH 112 (238)
T ss_dssp ---SCCCTTEE-EEEEEEEEEEEEEETTS
T ss_pred ---CCCcccce-eeeeccCcEEEEEcCCC
Confidence 11122233 35778888888888665
No 185
>3fzv_A Probable transcriptional regulator; LYSR, structural genomics, PSI-2, structure initiative; 2.71A {Pseudomonas aeruginosa PA01}
Probab=92.14 E-value=2.5 Score=43.99 Aligned_cols=194 Identities=15% Similarity=0.117 Sum_probs=113.4
Q ss_pred CcceEEEecCcccccccEEeeCCcceEEEeeHHHHHHHHHhCCCcccEEEeeCCCCCCCCChHHHHHHHHcCceeEEEec
Q 002211 484 GRQLRIGVPNRVSYRDFVFKVNGTDIVHGYCIDVFLAAVRLLPYAVPYKFIPYGDGHKNPTYSELINQITTGVFDAAVGD 563 (953)
Q Consensus 484 g~~lri~v~~~~~~~p~~~~~~~~~~~~G~~~dll~~la~~l~~~~~~~~~~~~~~~~n~~~~~~i~~l~~g~~Di~~~~ 563 (953)
.++|+||++. .+. ..+..+++..+.++.+ .++++... ++..+++..|.+|++|+++..
T Consensus 94 ~g~l~i~~~~--~~~------------~~~l~~~l~~f~~~~P-~i~i~l~~-------~~~~~~~~~l~~g~~Dl~i~~ 151 (306)
T 3fzv_A 94 AGQIDIGCFE--TVA------------PLYLPGLIAGFRQAYP-GVEIRIRD-------GEQQELVQGLTSGRFDLAFLY 151 (306)
T ss_dssp CEEEEEEEEG--GGH------------HHHHHHHHHHHHHHCT-TEEEEEEE-------ECHHHHHHHHHHTSCSEEEEC
T ss_pred CceEEEEech--hhh------------HHHHHHHHHHHHHHCC-CeEEEEEe-------CCHHHHHHHHHCCCccEEEEe
Confidence 3579999874 111 2455678888888885 25565554 568899999999999998863
Q ss_pred EEEecCccceeeccccce-ecceEEEEecccCCcCcceeeccCchhHHHHHHHHHHHHHHHhhhhhcccCCCCCCCCccc
Q 002211 564 IAIVTNRTKAVDFTQPYI-ESGLVVVAPVRKLNSSAWAFLRPFTPLMWAVTGVFFLVVGTVVWILEHRLNDEFRGPPRKQ 642 (953)
Q Consensus 564 ~~~t~~r~~~vdft~p~~-~~~~~~~v~~~~~~~~~~~~l~PF~~~vW~~i~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ 642 (953)
-. .....+. ..++. ....+++++...+...
T Consensus 152 ~~---~~~~~l~-~~~l~~~~~~~~v~~~~~pl~~--------------------------------------------- 182 (306)
T 3fzv_A 152 EH---DLDSTIE-TEPLMPPQRPHALLPEGHRFAG--------------------------------------------- 182 (306)
T ss_dssp SS---SCCTTEE-EEESSCCBCCEEEEETTCTTTT---------------------------------------------
T ss_pred cc---ccccccc-eeeeeeccccEEEecCCCcccC---------------------------------------------
Confidence 21 2222232 34555 6677777776552110
Q ss_pred chhhHHHHHHHhhccccCCcccchhHHHHHHHHHHHHHhhhhcccceeeeeeeccccCCCCChHHhhhCCCeEEEE-eCc
Q 002211 643 IVTVLWFSFSTMFFAHRENTVSTLGRVVLIIWLFVVLIITSSYTASLTSILTVQQLSSPIKGIDTLMTSNDRVGYQ-VGS 721 (953)
Q Consensus 643 ~~~~~~~~~~~l~~~~~~~~~s~~~R~l~~~w~~~~lil~~~Yta~L~s~Lt~~~~~~~I~sl~dL~~~~~~ig~~-~~s 721 (953)
...-+++||. +.++-.. .+.
T Consensus 183 ---------------------------------------------------------~~~~~~~dL~--~~~~i~~~~~~ 203 (306)
T 3fzv_A 183 ---------------------------------------------------------QAQVSLRDLC--LEPMILLDVQP 203 (306)
T ss_dssp ---------------------------------------------------------SSEECHHHHT--TSCEEEECCTT
T ss_pred ---------------------------------------------------------CCCCCHHHHc--CCCEEEecCCc
Confidence 1234789997 4444333 333
Q ss_pred h---HHHHHHHhhCCCccceEeCCCHHHHHHHHHcCCcEEEEccchhHHHHHhcCcceEEeC--CccccCccEEEecCCC
Q 002211 722 F---AENYLIEELSIPKSRLVALGSPEEYAIALENRTVAAVVDERPYIDLFLSDHCQFSVRG--QEFTKSGWGFAFPRDS 796 (953)
Q Consensus 722 ~---~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~g~~~a~~~~~~~~~~~~~~~~~l~~~~--~~~~~~~~~~~~~k~s 796 (953)
. ...++ +..+.........++.+.....+..|.--+++-+.....+. .....+..+. .......++++.+++.
T Consensus 204 ~~~~~~~~~-~~~g~~~~~~~~~~~~~~~~~~v~~g~Gia~lp~~~~~~~~-~~~~~l~~~~~~~~~~~~~~~l~~~~~~ 281 (306)
T 3fzv_A 204 SRTYFVSLF-EELGLTPNIAFSSPSIEMVRGMVGQGFGFSLLVTRPHSECT-YDGKKVVMVDLAEPVSTSGLAAAWLKRA 281 (306)
T ss_dssp HHHHHHHHH-HHTTCCCCEEEEESCHHHHHHHHHTTSCBEEECCCCSCSBC-TTSCBEEEEEESSCCCBCCCEEEEETTS
T ss_pred chHHHHHHH-HHcCCCCCeEEEeCCHHHHHHHHHcCCCEEEEecccccccc-cCCCceEEEECCCCCccceEEEEEeCCc
Confidence 2 22333 33454444456678999999999988666666544332221 1112255443 3334567888888886
Q ss_pred cchHHHHHHHHhh
Q 002211 797 PLAIDMSTAILTL 809 (953)
Q Consensus 797 pl~~~~n~~i~~l 809 (953)
+....+...+..+
T Consensus 282 ~~~~~~~~f~~~l 294 (306)
T 3fzv_A 282 QLTKPARLFVDYC 294 (306)
T ss_dssp CCCHHHHHHHHHH
T ss_pred ccCHHHHHHHHHH
Confidence 6555555444443
No 186
>2esn_A Probable transcriptional regulator; PA0477, APC5828,transcription, PSI, protein struc initiative, MCSG; 2.10A {Pseudomonas aeruginosa} SCOP: a.4.5.37 c.94.1.1
Probab=92.06 E-value=2.4 Score=44.34 Aligned_cols=87 Identities=13% Similarity=0.158 Sum_probs=54.9
Q ss_pred CcceEEEecCcccccccEEeeCCcceEEEeeHHHHHHHHHhCCCcccEEEeeCCCCCCCCChHHHHHHHHcCceeEEEec
Q 002211 484 GRQLRIGVPNRVSYRDFVFKVNGTDIVHGYCIDVFLAAVRLLPYAVPYKFIPYGDGHKNPTYSELINQITTGVFDAAVGD 563 (953)
Q Consensus 484 g~~lri~v~~~~~~~p~~~~~~~~~~~~G~~~dll~~la~~l~~~~~~~~~~~~~~~~n~~~~~~i~~l~~g~~Di~~~~ 563 (953)
.++||||+.. .. ...+..+++..+.++.+ .++++... ++..++++.|.+|++|+++..
T Consensus 100 ~~~l~Ig~~~--~~------------~~~~l~~~l~~f~~~~P-~i~i~l~~-------~~~~~~~~~l~~g~~Dl~i~~ 157 (310)
T 2esn_A 100 QRTFVFAATD--YT------------AFALLPPLMNRLQHSAP-GVRLRLVN-------AERKLSVEALASGRIDFALGY 157 (310)
T ss_dssp CCEEEEECCH--HH------------HHHHHHHHHHHHHHHST-TCEEEEEC-------CSSSCCHHHHHHTSSSEEEEC
T ss_pred CceEEEEeCh--HH------------HHHHHHHHHHHHHHHCC-CeEEEEEe-------CCcccHHHHHHcCCCCEEEec
Confidence 3579999863 11 12355677888888875 35566654 445678899999999999863
Q ss_pred EEEecCccceeeccccceecceEEEEeccc
Q 002211 564 IAIVTNRTKAVDFTQPYIESGLVVVAPVRK 593 (953)
Q Consensus 564 ~~~t~~r~~~vdft~p~~~~~~~~~v~~~~ 593 (953)
....+.....+. ..++....++++++...
T Consensus 158 ~~~~~~~~~~l~-~~~l~~~~~~~v~~~~~ 186 (310)
T 2esn_A 158 DEEHERLPEGIQ-AHDWFADRYVVVARRDH 186 (310)
T ss_dssp CSTTCCCCTTEE-EEEEEEECEEEEEESSC
T ss_pred CcccccCCcCcc-eeeeeccceEEEEeCCC
Confidence 100111112222 45777888888887655
No 187
>2i49_A Bicarbonate transporter; alpha-beta protein, C-clamp, ABC transporter, periplasmic SO binding protein, bicarbonate-binding protein; 1.35A {Synechocystis SP} PDB: 2i48_A 2i4b_A 2i4c_A
Probab=91.95 E-value=0.35 Score=53.76 Aligned_cols=106 Identities=15% Similarity=0.195 Sum_probs=63.0
Q ss_pred hHHh-hhCCC--eEEEE-eCchHHHHH---HHhhCCCc---cceEeCCCHHHHHHHHHcCCcEEEEccchhHHHHHhcCc
Q 002211 705 IDTL-MTSND--RVGYQ-VGSFAENYL---IEELSIPK---SRLVALGSPEEYAIALENRTVAAVVDERPYIDLFLSDHC 774 (953)
Q Consensus 705 l~dL-~~~~~--~ig~~-~~s~~~~~l---~~~~~~~~---~~~~~~~~~~~~~~~l~~g~~~a~~~~~~~~~~~~~~~~ 774 (953)
++|| .+.|+ +||+. .++....++ .+..++.. .+++.+ .+.+...+|.+|++||++...++......+..
T Consensus 153 i~dL~k~~GK~~~Iav~~~gs~~~~~l~~~L~~~Gl~p~~DV~~v~~-~~~~~~~aL~~G~iDa~~~~eP~~~~a~~~g~ 231 (429)
T 2i49_A 153 IKGFNKTNGRKFKAAHTFPNVNQDFWIRYWFAAGGVDPDTDIDLLAV-PPAETVQGMRNGTMDAFSTGDPWPYRIVTENI 231 (429)
T ss_dssp HHTHHHHHSSCCEEEESSTTSHHHHHHHHHHHHTTCCTTTTSEEEEC-CHHHHHHHHHHTCCCEEEEETTHHHHHHHTTS
T ss_pred HHHHHHhCCCCcEEEEeCCCCHHHHHHHHHHHhcCCCCCCcEEEEEC-ChHHHHHHHHcCCccEEEeccchHHHHHHCCC
Confidence 6888 65577 89997 566443322 13345543 345555 67899999999999999988887766555433
Q ss_pred ceEEe--CCcccc-CccEEEecCC----Cc-----chHHHHHHHHhhhc
Q 002211 775 QFSVR--GQEFTK-SGWGFAFPRD----SP-----LAIDMSTAILTLSE 811 (953)
Q Consensus 775 ~l~~~--~~~~~~-~~~~~~~~k~----sp-----l~~~~n~~i~~l~e 811 (953)
...+. ++.... ....++++++ .| +...+.++..++.+
T Consensus 232 g~~~~~~~~~~~~~~~~vl~~~~~~~~~~Pe~v~~~~~A~~~A~~~~~~ 280 (429)
T 2i49_A 232 GYMAGLTAQIWPYHPEEYLAIRADWVDKNPKATKALLKGIMEAQQWIDD 280 (429)
T ss_dssp CEEEEEHHHHSTTCCCCEEEEEHHHHHHCHHHHHHHHHHHHHHHHHHTS
T ss_pred CEEEEechHhcCCCceEEEEECHHHHHHCHHHHHHHHHHHHHHHHHHhC
Confidence 22222 222221 2345666654 45 44455555555554
No 188
>1lnq_A MTHK channels, potassium channel related protein; rossman fold, helix bundle, membrane protein; 3.30A {Methanothermobacter thermautotrophicusorganism_taxid} SCOP: c.2.1.9 d.286.1.1 f.14.1.1 PDB: 3rbz_A
Probab=91.76 E-value=0.12 Score=55.74 Aligned_cols=124 Identities=10% Similarity=0.021 Sum_probs=76.9
Q ss_pred cchhhHHHHHHHhhccccC--CcccchhHHHHHHHHHHHHHhhhhcccceeeeeeeccccCCCCChHHhhhCCCeEEEEe
Q 002211 642 QIVTVLWFSFSTMFFAHRE--NTVSTLGRVVLIIWLFVVLIITSSYTASLTSILTVQQLSSPIKGIDTLMTSNDRVGYQV 719 (953)
Q Consensus 642 ~~~~~~~~~~~~l~~~~~~--~~~s~~~R~l~~~w~~~~lil~~~Yta~L~s~Lt~~~~~~~I~sl~dL~~~~~~ig~~~ 719 (953)
++.+++||++.++...|.. .|.+..+|++.++|.++++++.+...+.+++.++.......... ....+ ..++.+..
T Consensus 45 ~~~~a~y~~~~t~tTvGyGd~~p~t~~~r~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~-~~~viI~G 122 (336)
T 1lnq_A 45 SWTVSLYWTFVTIATVGYGDYSPSTPLGMYFTVTLIVLGIGTFAVAVERLLEFLINREQMKLMGL-IDVAK-SRHVVICG 122 (336)
T ss_dssp CSSTTHHHHHHHHTTCCCSSCCCCCSSHHHHHTHHHHTTSTTTTTHHHHHTTTC-------------------CEEEEES
T ss_pred CHHHHHHHHHHHhhcccCCCCCCCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh-hhhcc-cCCEEEEC
Confidence 5788999999999988744 78899999999999999999999999999999988765432211 11111 23444433
Q ss_pred -CchHHHHHHHhhCCCccceEeCCCHHHHHHHHHcCCcEEEEccchhHHHHH
Q 002211 720 -GSFAENYLIEELSIPKSRLVALGSPEEYAIALENRTVAAVVDERPYIDLFL 770 (953)
Q Consensus 720 -~s~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~g~~~a~~~~~~~~~~~~ 770 (953)
|....... +.+..... ++..+..++..+ +++.+..++.++....+.+.
T Consensus 123 ~G~~g~~l~-~~L~~~g~-v~vid~~~~~~~-~~~~~~~~i~gd~~~~~~L~ 171 (336)
T 1lnq_A 123 WSESTLECL-RELRGSEV-FVLAEDENVRKK-VLRSGANFVHGDPTRVSDLE 171 (336)
T ss_dssp CCHHHHHHH-TTGGGSCE-EEEESCGGGHHH-HHHTTCEEEESCTTSHHHHH
T ss_pred CcHHHHHHH-HHHHhCCc-EEEEeCChhhhh-HHhCCcEEEEeCCCCHHHHH
Confidence 44333333 44432334 555666666666 66667778887766555543
No 189
>2q67_A Potassium channel protein; inverted teepee, helix bundle, tetramer, central cavity, ION metal transport, membrane protein; 2.30A {Bacillus cereus} PDB: 2q68_A 2q6a_A 2q69_A 2ahy_A 2ahz_A
Probab=91.71 E-value=0.21 Score=43.85 Aligned_cols=55 Identities=15% Similarity=0.353 Sum_probs=47.9
Q ss_pred cchhhHHHHHHHhhccccC--CcccchhHHHHHHHHHHHHHhhhhcccceeeeeeec
Q 002211 642 QIVTVLWFSFSTMFFAHRE--NTVSTLGRVVLIIWLFVVLIITSSYTASLTSILTVQ 696 (953)
Q Consensus 642 ~~~~~~~~~~~~l~~~~~~--~~~s~~~R~l~~~w~~~~lil~~~Yta~L~s~Lt~~ 696 (953)
+..+++|+++.++...|.. .|.+..+|++.++|.++++.+.....+.+++.++..
T Consensus 49 ~~~~a~y~~~~T~tTvGyGdi~P~t~~gr~~~~~~~~~G~~~~~~~~~~l~~~~~~~ 105 (114)
T 2q67_A 49 RPIDALYFSVVTLTTVGAGNFSPQTDFGKIFTILYIFIGIGLVFGFIHKLAVNVQLP 105 (114)
T ss_dssp CHHHHHHHHHHHHTSCCCSSCCCCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC-
T ss_pred CHHHHHHHHHHHhcceeCCCCccCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5789999999999988744 789999999999999999999999999988877543
No 190
>1p7b_A Integral membrane channel and cytosolic domains; transmembrane helices, ION conduction, immunoglobulin fold, assembly; 3.65A {Burkholderia pseudomallei} SCOP: b.1.18.16 f.14.1.1 PDB: 2wll_B* 2wll_A*
Probab=91.68 E-value=0.21 Score=52.93 Aligned_cols=59 Identities=12% Similarity=0.113 Sum_probs=51.9
Q ss_pred CcccchhhHHHHHHHhhccccC--CcccchhHHHHHHHHHHHHHhhhhcccceeeeeeecc
Q 002211 639 PRKQIVTVLWFSFSTMFFAHRE--NTVSTLGRVVLIIWLFVVLIITSSYTASLTSILTVQQ 697 (953)
Q Consensus 639 ~~~~~~~~~~~~~~~l~~~~~~--~~~s~~~R~l~~~w~~~~lil~~~Yta~L~s~Lt~~~ 697 (953)
...++..++||++.++...|.. .|.+..+|++.+++.++++++.+.-++.+.+.++.+.
T Consensus 93 ~~~s~~~a~yfs~vT~tTVGYGDi~P~t~~gr~~~~~~~l~G~~~~a~~ig~i~~~~~~~~ 153 (333)
T 1p7b_A 93 SPPGFVGAFFFSVETLATVGYGDMHPQTVYAHAIATLEIFVGMSGIALSTGLVFARFARPR 153 (333)
T ss_dssp SSSSTHHHHHHHTTTTTTCCCSCCCCCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSCC
T ss_pred CCCcHHHhHhhhheeeeecCCCCCcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3456889999999999988744 7899999999999999999999999999999888765
No 191
>1xl4_A Inward rectifier potassium channel; integral membrane protein, ION channel, inwardly rectifying channel, metal transport; 2.60A {Magnetospirillum magnetotacticum} SCOP: b.1.18.16 f.14.1.1 PDB: 1xl6_A* 2wlh_A 2wli_B 2wlj_A* 2wlk_A* 2wlm_A 2wlo_A 2wln_A 3zrs_A 2wli_A 2x6c_A* 2x6b_A* 2x6a_A*
Probab=91.10 E-value=0.28 Score=51.24 Aligned_cols=61 Identities=10% Similarity=0.087 Sum_probs=52.0
Q ss_pred CCCcccchhhHHHHHHHhhccccC--CcccchhHHHHHHHHHHHHHhhhhcccceeeeeeecc
Q 002211 637 GPPRKQIVTVLWFSFSTMFFAHRE--NTVSTLGRVVLIIWLFVVLIITSSYTASLTSILTVQQ 697 (953)
Q Consensus 637 ~~~~~~~~~~~~~~~~~l~~~~~~--~~~s~~~R~l~~~w~~~~lil~~~Yta~L~s~Lt~~~ 697 (953)
+.....+..++||++.++...|.. .|.+..+|++.+++.++++++.+..++.+.+.++.+.
T Consensus 77 ~~~~~s~~~a~yfs~vT~tTvGYGDi~P~t~~gr~~~~~~~l~G~~~~a~~~g~v~~~~~~~~ 139 (301)
T 1xl4_A 77 NARPGSFTDAFFFSVQTMATIGYGKLIPIGPLANTLVTLEALCGMLGLAVAASLIYARFTRPT 139 (301)
T ss_dssp TSCTTCHHHHHHHHHHHHTTCCCSSSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCCC
T ss_pred CCCcCCHHHHHHHhhhheeccCCCCCcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHH
Confidence 334456899999999999988744 7899999999999999999999999999988886643
No 192
>3vou_A ION transport 2 domain protein, voltage-gated SOD channel; 4-helical bundle, ION channel, membrane, transport protein; 3.20A {Bacillus weihenstephanensis}
Probab=91.09 E-value=0.33 Score=44.93 Aligned_cols=54 Identities=17% Similarity=0.357 Sum_probs=47.4
Q ss_pred cchhhHHHHHHHhhccccC--CcccchhHHHHHHHHHHHHHhhhhcccceeeeeee
Q 002211 642 QIVTVLWFSFSTMFFAHRE--NTVSTLGRVVLIIWLFVVLIITSSYTASLTSILTV 695 (953)
Q Consensus 642 ~~~~~~~~~~~~l~~~~~~--~~~s~~~R~l~~~w~~~~lil~~~Yta~L~s~Lt~ 695 (953)
.+.+++||++.++...|.. .|.+..+|++.++|.++++.+.+...+++.+.+..
T Consensus 52 ~~~~a~y~~~~t~tTvGyGd~~p~t~~~r~~~~~~~~~g~~~~~~~~~~~~~~~~~ 107 (148)
T 3vou_A 52 RPLDALYFSVVTLTTVGDGNFSPQTDFGKVFTILYIFIGIGLVFGFIHKLAVNVQL 107 (148)
T ss_dssp CHHHHHHHHHHHHTTCCCSSCCCCSHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCH
T ss_pred CHHHHHHHHHHHHHccCCCCCCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5889999999999988744 78899999999999999999999999888776644
No 193
>2y7p_A LYSR-type regulatory protein; transcription regulator, DNA-binding, transcription, transcr factor, transcription regulation; HET: SAL PEU; 1.85A {Burkholderia SP} PDB: 2y7k_A* 2y84_A 2y7w_A 2y7r_A
Probab=90.87 E-value=3.6 Score=40.36 Aligned_cols=84 Identities=12% Similarity=0.151 Sum_probs=58.3
Q ss_pred CcceEEEecCcccccccEEeeCCcceEEEeeHHHHHHHHHhCCCcccEEEeeCCCCCCCCChHHHHHHHHcCceeEEEec
Q 002211 484 GRQLRIGVPNRVSYRDFVFKVNGTDIVHGYCIDVFLAAVRLLPYAVPYKFIPYGDGHKNPTYSELINQITTGVFDAAVGD 563 (953)
Q Consensus 484 g~~lri~v~~~~~~~p~~~~~~~~~~~~G~~~dll~~la~~l~~~~~~~~~~~~~~~~n~~~~~~i~~l~~g~~Di~~~~ 563 (953)
.++||||+.. . ....+-..++..+.++.+ .++++... ++..+++++|.+|++|++++.
T Consensus 7 ~g~l~Ig~~~--~------------~~~~~lp~~l~~f~~~~P-~v~l~l~~-------~~~~~l~~~L~~g~iDl~i~~ 64 (218)
T 2y7p_A 7 TRTFNLAMTD--I------------GEMYFMPPLMEALAQRAP-HIQISTLR-------PNAGNLKEDMESGAVDLALGL 64 (218)
T ss_dssp CCEEEEECCH--H------------HHHHHHHHHHHHHHHHCT-TCEEEEEC-------CCTTTHHHHHHHTSSCEEEEC
T ss_pred ceEEEEEecH--H------------HHHHHHHHHHHHHHHHCC-CCEEEEEe-------CCcccHHHHHhCCCceEEEec
Confidence 4678998763 1 112456678888888885 35666654 557899999999999998863
Q ss_pred EEEecCccceeeccccceecceEEEEeccc
Q 002211 564 IAIVTNRTKAVDFTQPYIESGLVVVAPVRK 593 (953)
Q Consensus 564 ~~~t~~r~~~vdft~p~~~~~~~~~v~~~~ 593 (953)
. ......+.+ .|+....++++++...
T Consensus 65 ~---~~~~~~l~~-~~l~~~~~~~v~~~~h 90 (218)
T 2y7p_A 65 L---PELQTGFFQ-RRLFRHRYVCMFRKDH 90 (218)
T ss_dssp C---TTCCTTEEE-EEEEEECEEEEEETTC
T ss_pred C---CCCCcceeE-EEeeeccEEEEEcCCC
Confidence 2 222223443 5788899999998766
No 194
>1sw5_A Osmoprotection protein (PROX); binding-protein, compatible solutes, cation-PI interactions, classical hydrogen bonds, protein binding; 1.80A {Archaeoglobus fulgidus} SCOP: c.94.1.1 PDB: 1sw4_A 1sw1_A 1sw2_A 3mam_A*
Probab=90.87 E-value=0.73 Score=47.74 Aligned_cols=105 Identities=8% Similarity=-0.003 Sum_probs=59.1
Q ss_pred CCCChHHhhhCC--CeEEEEeCch-----HHHHHHHhhCCCccceEeCCCHHHHHHHHHcCCcEEEEccchhHHHHHhcC
Q 002211 701 PIKGIDTLMTSN--DRVGYQVGSF-----AENYLIEELSIPKSRLVALGSPEEYAIALENRTVAAVVDERPYIDLFLSDH 773 (953)
Q Consensus 701 ~I~sl~dL~~~~--~~ig~~~~s~-----~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~g~~~a~~~~~~~~~~~~~~~ 773 (953)
.|+|++||.... .++|...+.. ....+ +.+++....+... +..+...++.+|++|++..-.+....- +
T Consensus 124 ~i~si~DL~g~~~~~~~g~~~~~~~~~~g~~~~~-~~yGl~~~~~~~~-~~~~~~~Al~~g~vd~~~~~~p~~~~~--~- 198 (275)
T 1sw5_A 124 GVEKISDLAEFADQLVFGSDPEFASRPDGLPQIK-KVYGFEFKEVKQM-EPTLMYEAIKNKQVDVIPAYTTDSRVD--L- 198 (275)
T ss_dssp TCCBGGGGTTTGGGCEEEECHHHHHSTTSHHHHH-HHHTCCCSEEEEC-CGGGHHHHHHTTSCSEEEEETTCHHHH--H-
T ss_pred CCCcHHHHHhhhcceEeccCcccccccchHHHHH-HhcCCCcccccCC-CHHHHHHHHHcCCCeEEEEeCCCcchh--c-
Confidence 799999997331 1444332211 11133 5566654455555 567889999999999999887766542 2
Q ss_pred cceEEeCCc---cccCccEEEecCCCcchHHHHHHHHhhh
Q 002211 774 CQFSVRGQE---FTKSGWGFAFPRDSPLAIDMSTAILTLS 810 (953)
Q Consensus 774 ~~l~~~~~~---~~~~~~~~~~~k~spl~~~~n~~i~~l~ 810 (953)
.+++++... +.......+++++..=.+.+-+.+.++.
T Consensus 199 ~~l~~L~d~~~~~~~~~~~~v~~~~~~~~P~~~~~l~~l~ 238 (275)
T 1sw5_A 199 FNLKILEDDKGALPPYDAIIIVNGNTAKDEKLISVLKLLE 238 (275)
T ss_dssp TTEEECBCTTCCSCCCEEEEEECTTGGGCHHHHHHHHTTT
T ss_pred CCeEEccCCcccCCccceeeeeehhhccChHHHHHHHHHH
Confidence 245555432 2223344566655320034445555553
No 195
>4esw_A Pyrimidine biosynthesis enzyme THI13; thiamin pyrimidine biosynthesis, transferase; HET: CIT; 1.60A {Candida albicans} PDB: 4esx_A*
Probab=90.84 E-value=0.7 Score=49.64 Aligned_cols=67 Identities=13% Similarity=0.146 Sum_probs=43.1
Q ss_pred CCCCChHHhhhCCCeEEEEeCchHHHHH---HHhhCCCccceEeCCCHHHHHHHHHcCCcEEEEccchhHHHH
Q 002211 700 SPIKGIDTLMTSNDRVGYQVGSFAENYL---IEELSIPKSRLVALGSPEEYAIALENRTVAAVVDERPYIDLF 769 (953)
Q Consensus 700 ~~I~sl~dL~~~~~~ig~~~~s~~~~~l---~~~~~~~~~~~~~~~~~~~~~~~l~~g~~~a~~~~~~~~~~~ 769 (953)
+.+++++||. |++||+.. +....++ .+..+.....+.......+...++.+|.+|+.+.-.++....
T Consensus 101 ~~~~~~~dLk--GK~ig~~~-~~~~~~l~~~L~~~Gl~~~dv~~v~~~~~~~~al~~G~vDa~~~~~p~~~~~ 170 (342)
T 4esw_A 101 GITSDFQSLK--GKRIGYVG-EFGKIQVDELTKHYGMTPDDYVAVRCGMNVAKYILEGTIDCGIGIECIQQVE 170 (342)
T ss_dssp SCCSSGGGGT--TCEEEESS-SHHHHHHHHHHGGGTCCGGGSEEEECGGGHHHHHHHTSSSEEEEETTTHHHH
T ss_pred cccCCHHHhC--CCEEEecC-CchHHHHHHHHHHcCCChhheEEecCCHHHHHHHHcCCCCEEEEeccchHHH
Confidence 5677899997 99999864 4333222 234455555444443344566788999999998876655443
No 196
>2ql3_A Probable transcriptional regulator, LYSR family P; APC7314, rhodococcus RHA1, structural genomics, PSI-2; HET: MSE; 2.05A {Rhodococcus SP}
Probab=90.67 E-value=4.8 Score=38.74 Aligned_cols=84 Identities=17% Similarity=0.161 Sum_probs=56.4
Q ss_pred CcceEEEecCcccccccEEeeCCcceEEEeeHHHHHHHHHhCCCcccEEEeeCCCCCCCCChHHHHHHHHcCceeEEEec
Q 002211 484 GRQLRIGVPNRVSYRDFVFKVNGTDIVHGYCIDVFLAAVRLLPYAVPYKFIPYGDGHKNPTYSELINQITTGVFDAAVGD 563 (953)
Q Consensus 484 g~~lri~v~~~~~~~p~~~~~~~~~~~~G~~~dll~~la~~l~~~~~~~~~~~~~~~~n~~~~~~i~~l~~g~~Di~~~~ 563 (953)
.++||||+.. ... ..+-.+++..+.++.+ .++++... ++..++.++|.+|++|+++..
T Consensus 4 ~g~l~Ig~~~--~~~------------~~~l~~~l~~f~~~~P-~i~i~l~~-------~~~~~l~~~l~~g~~Dl~i~~ 61 (209)
T 2ql3_A 4 AGPIAVGCYP--ALG------------PTILPSMLYAFTAEYP-RASVEFRE-------DTQNRLRTQLEGGELDVAIVY 61 (209)
T ss_dssp CEEEEEEECG--GGT------------TTTHHHHHHHHHHHCT-TEEEEEEE-------CCHHHHHHHHHTTSCSEEEEE
T ss_pred ceeEEEeech--hhh------------hhhHHHHHHHHHHHCC-CceEEEEE-------CcHHHHHHHHHcCCccEEEEe
Confidence 3578998874 111 2345678888988886 35666655 568899999999999998752
Q ss_pred EEEecCccceeeccccceecceEEEEeccc
Q 002211 564 IAIVTNRTKAVDFTQPYIESGLVVVAPVRK 593 (953)
Q Consensus 564 ~~~t~~r~~~vdft~p~~~~~~~~~v~~~~ 593 (953)
. ......+. +.++....++++++...
T Consensus 62 ~---~~~~~~l~-~~~l~~~~~~~v~~~~h 87 (209)
T 2ql3_A 62 D---LDLSPEWQ-TVPLMTREPMVVLGAEH 87 (209)
T ss_dssp S---SSCCTTEE-EEEEEEECCEEEEETTC
T ss_pred c---CCCCCCce-EEEeecCceEEEEeCCC
Confidence 2 11112232 35677888888887654
No 197
>3fxq_A LYSR type regulator of TSAMBCD; transcriptional regulator, LTTR, TSAR, WHTH, DNA- transcription, transcription regulation; 1.85A {Comamonas testosteroni} PDB: 3fxr_A* 3fxu_A* 3fzj_A 3n6t_A 3n6u_A*
Probab=90.59 E-value=2.7 Score=43.79 Aligned_cols=85 Identities=15% Similarity=0.160 Sum_probs=56.2
Q ss_pred cceEEEecCcccccccEEeeCCcceEEEeeHHHHHHHHHhCCCcccEEEeeCCCCCCCCChHHHHHHHHcCceeEEEecE
Q 002211 485 RQLRIGVPNRVSYRDFVFKVNGTDIVHGYCIDVFLAAVRLLPYAVPYKFIPYGDGHKNPTYSELINQITTGVFDAAVGDI 564 (953)
Q Consensus 485 ~~lri~v~~~~~~~p~~~~~~~~~~~~G~~~dll~~la~~l~~~~~~~~~~~~~~~~n~~~~~~i~~l~~g~~Di~~~~~ 564 (953)
++|||++.. .+ ...+...++..+.++.+ .++++... ++.++++..|.+|++|+++...
T Consensus 92 g~l~I~~~~--~~------------~~~~l~~~l~~f~~~~P-~i~i~l~~-------~~~~~~~~~l~~g~~Dlai~~~ 149 (305)
T 3fxq_A 92 GHITFAASP--AI------------ALAALPLALASFAREFP-DVTVNVRD-------GMYPAVSPQLRDGTLDFALTAA 149 (305)
T ss_dssp TEEEEEECH--HH------------HHTHHHHHHHHHHHHCT-TCEEEEEE-------CCTTTTHHHHHHTSSSEEEEEC
T ss_pred ceEEEEech--HH------------HHHHHHHHHHHHHHHCC-CCEEEEEE-------CCHHHHHHHHHcCCCCEEEecC
Confidence 579998874 11 12356678888888885 35566654 4567889999999999998632
Q ss_pred EEecCccceeeccccceecceEEEEeccc
Q 002211 565 AIVTNRTKAVDFTQPYIESGLVVVAPVRK 593 (953)
Q Consensus 565 ~~t~~r~~~vdft~p~~~~~~~~~v~~~~ 593 (953)
.... ....+ -..++....++++++...
T Consensus 150 ~~~~-~~~~l-~~~~L~~~~~~~v~~~~h 176 (305)
T 3fxq_A 150 HKHD-IDTDL-EAQPLYVSDVVIVGQRQH 176 (305)
T ss_dssp CGGG-SCTTE-EEEEEEECCEEEEEETTC
T ss_pred CCCC-CccCe-eEEEeecCcEEEEEcCCC
Confidence 2111 01122 246778888999888665
No 198
>1orq_C Potassium channel; voltage-dependent, KVAP, FAB complex, MEM protein; 3.20A {Aeropyrum pernix} SCOP: f.14.1.1 PDB: 2a0l_A
Probab=90.39 E-value=0.3 Score=48.90 Aligned_cols=73 Identities=12% Similarity=0.213 Sum_probs=56.8
Q ss_pred HHHHHhhhhhcccCCCCCCCCcccchhhHHHHHHHhhccccC--CcccchhHHHHHHHHHHHHHhhhhcccceeeeeee
Q 002211 619 VVGTVVWILEHRLNDEFRGPPRKQIVTVLWFSFSTMFFAHRE--NTVSTLGRVVLIIWLFVVLIITSSYTASLTSILTV 695 (953)
Q Consensus 619 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~--~~~s~~~R~l~~~w~~~~lil~~~Yta~L~s~Lt~ 695 (953)
+.+++.+.+|+.. .++...+..+++|+++.++...|.. .|.+..+|++.+++.++++.+.+...+.+++.++.
T Consensus 146 ~~~~~~~~~e~~~----~~~~~~~~~~s~y~~~~t~tTvGyGdi~P~t~~~~~~~~~~~~~G~~~~~~~i~~i~~~~~~ 220 (223)
T 1orq_C 146 YGAFAIYIVEYPD----PNSSIKSVFDALWWAVVTATTVGYGDVVPATPIGKVIGIAVMLTGISALTLLIGTVSNMFQK 220 (223)
T ss_dssp HHHHHHHHTTSSS----TTCSCCSHHHHHHHHHHHHTTCCCCSSCCCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCC----cCCCcCcchhHHHhHHhHHhccCCCCCCCCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4455566666532 1233457899999999999988743 78999999999999999999999999998877653
No 199
>1al3_A Cys regulon transcriptional activator CYSB; LYSR family, cysteine biosynthesis, transcription regulation; 1.80A {Klebsiella aerogenes} SCOP: c.94.1.1
Probab=90.34 E-value=7.7 Score=40.69 Aligned_cols=205 Identities=12% Similarity=0.073 Sum_probs=120.7
Q ss_pred cceEEEecCcccccccEEeeCCcceEEEeeHHHHHHHHHhCCCcccEEEeeCCCCCCCCChHHHHHHHHcCceeEEEecE
Q 002211 485 RQLRIGVPNRVSYRDFVFKVNGTDIVHGYCIDVFLAAVRLLPYAVPYKFIPYGDGHKNPTYSELINQITTGVFDAAVGDI 564 (953)
Q Consensus 485 ~~lri~v~~~~~~~p~~~~~~~~~~~~G~~~dll~~la~~l~~~~~~~~~~~~~~~~n~~~~~~i~~l~~g~~Di~~~~~ 564 (953)
++||||++. .+ ...+...++..+.++.+ .++++... ++.+++++.|.+|++|+++...
T Consensus 93 g~l~I~~~~--~~------------~~~~l~~~l~~f~~~~P-~v~i~l~~-------~~~~~~~~~l~~g~~Dlai~~~ 150 (324)
T 1al3_A 93 GSLYVATTH--TQ------------ARYALPGVIKGFIERYP-RVSLHMHQ-------GSPTQIAEAVSKGNADFAIATE 150 (324)
T ss_dssp EEEEEEECH--HH------------HHHTSHHHHHHHHHHCT-EEEEEEEE-------CCHHHHHHHHHTTCCSEEEESS
T ss_pred CeEEEEech--hh------------hhhHHHHHHHHHHHHCC-CCEEEEEE-------CCHHHHHHHHHCCCceEEEEec
Confidence 579998874 11 12455678888888876 35566654 5578999999999999998632
Q ss_pred EEecCccceeeccccceecceEEEEecccCCcCcceeeccCchhHHHHHHHHHHHHHHHhhhhhcccCCCCCCCCcccch
Q 002211 565 AIVTNRTKAVDFTQPYIESGLVVVAPVRKLNSSAWAFLRPFTPLMWAVTGVFFLVVGTVVWILEHRLNDEFRGPPRKQIV 644 (953)
Q Consensus 565 ~~t~~r~~~vdft~p~~~~~~~~~v~~~~~~~~~~~~l~PF~~~vW~~i~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~ 644 (953)
.. .....+. ..+.....++++++...+..
T Consensus 151 ~~--~~~~~l~-~~~L~~~~~~~v~~~~~pl~------------------------------------------------ 179 (324)
T 1al3_A 151 AL--HLYDDLV-MLPCYHWNRSIVVTPEHPLA------------------------------------------------ 179 (324)
T ss_dssp CC--CTTSCEE-EEEEEEECEEEEECTTSTTT------------------------------------------------
T ss_pred CC--CCCCCee-EEEecCCceEEEEcCCCccc------------------------------------------------
Confidence 11 1112222 35677778888887655211
Q ss_pred hhHHHHHHHhhccccCCcccchhHHHHHHHHHHHHHhhhhcccceeeeeeeccccCCCCChHHhhhCCCe-EEEEeCchH
Q 002211 645 TVLWFSFSTMFFAHRENTVSTLGRVVLIIWLFVVLIITSSYTASLTSILTVQQLSSPIKGIDTLMTSNDR-VGYQVGSFA 723 (953)
Q Consensus 645 ~~~~~~~~~l~~~~~~~~~s~~~R~l~~~w~~~~lil~~~Yta~L~s~Lt~~~~~~~I~sl~dL~~~~~~-ig~~~~s~~ 723 (953)
....-+++||. +.+ |.+..++..
T Consensus 180 ------------------------------------------------------~~~~~~~~dL~--~~~~i~~~~~~~~ 203 (324)
T 1al3_A 180 ------------------------------------------------------TKGSVSIEELA--QYPLVTYTFGFTG 203 (324)
T ss_dssp ------------------------------------------------------TTSCCCHHHHH--TSEEEEECTTSTT
T ss_pred ------------------------------------------------------cCCCCCHHHHh--CCCeEEecCCCcH
Confidence 02335689997 555 334433322
Q ss_pred ----HHHHHHhhCCCccceEeCCCHHHHHHHHHcCCcEEEEccchhHHHHHhcCcceEEeC--CccccCccEEEecCCCc
Q 002211 724 ----ENYLIEELSIPKSRLVALGSPEEYAIALENRTVAAVVDERPYIDLFLSDHCQFSVRG--QEFTKSGWGFAFPRDSP 797 (953)
Q Consensus 724 ----~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~g~~~a~~~~~~~~~~~~~~~~~l~~~~--~~~~~~~~~~~~~k~sp 797 (953)
..++. ..+.........++.+.....+..|.--+++-...... .. ..++..+. .......++++.+++.+
T Consensus 204 ~~~~~~~~~-~~g~~~~~~~~~~~~~~~~~lv~~G~Giailp~~~~~~-~~--~~~L~~~~~~~~~~~~~~~l~~~~~~~ 279 (324)
T 1al3_A 204 RSELDTAFN-RAGLTPRIVFTATDADVIKTYVRLGLGVGVIASMAVDP-VS--DPDLVKLDANGIFSHSTTKIGFRRSTF 279 (324)
T ss_dssp HHHHHHHHH-HHTCCCEEEEEESSHHHHHHHHHHTSCEEEEEGGGCCT-TT--CTTSEEEECBTTBCCEEEEEEEETTCC
T ss_pred HHHHHHHHH-HcCCCCceEEEeCCHHHHHHHHHhCCCeEEechhhhhh-hc--cCCeEEEECCCCCcceEEEEEEeCCCC
Confidence 23342 33444344456788888999999877667665432211 11 23454443 22234467788888877
Q ss_pred chHHHHHHHHhhhccccHHHHHHHhc
Q 002211 798 LAIDMSTAILTLSENGELQRIHDKWL 823 (953)
Q Consensus 798 l~~~~n~~i~~l~e~G~~~~~~~~w~ 823 (953)
+...+...+..+.+.- -+.+.++++
T Consensus 280 ~~~~~~~fi~~l~~~~-~~~~~~~~~ 304 (324)
T 1al3_A 280 LRSYMYDFIQRFAPHL-TRDVVDTAV 304 (324)
T ss_dssp CCHHHHHHHHHHCTTC-CHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHh-ccchhhhhh
Confidence 7666666666665532 234444443
No 200
>2pfz_A Putative exported protein; extracytoplasmic solute receptor, tripartite ATP independent periplasmic transport, pyroglutamic acid; 1.80A {Bordetella pertussis tohama I}
Probab=90.30 E-value=1.8 Score=45.41 Aligned_cols=56 Identities=13% Similarity=0.135 Sum_probs=42.0
Q ss_pred CCCCChHHhhhCCCeEEEEeCchHHHHHHHhhCCCccceEeCCCHHHHHHHHHcCCcEEEEccc
Q 002211 700 SPIKGIDTLMTSNDRVGYQVGSFAENYLIEELSIPKSRLVALGSPEEYAIALENRTVAAVVDER 763 (953)
Q Consensus 700 ~~I~sl~dL~~~~~~ig~~~~s~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~g~~~a~~~~~ 763 (953)
.+|++++||. |++|.+. |+.....+ +.++. ..++. ...|...+|++|.+|+.....
T Consensus 128 ~pI~s~~Dlk--G~KiR~~-~~~~~~~~-~~lGa---~pv~~-~~~E~y~ALq~G~vDg~~~~~ 183 (301)
T 2pfz_A 128 RDIKQVSDMK--GLKWRAY-SPVTAKIA-ELVGA---QPVTV-QQAELAQAMATGVIDSYMSSG 183 (301)
T ss_dssp SCCSSGGGGT--TCEEEES-SHHHHHHH-HHHTC---EEEEC-CGGGHHHHHHTTSCSEEEECH
T ss_pred CCCCChHHhc--CCEEecC-ChhHHHHH-HHcCC---cceec-CHHHHHHHHhcCeeeEEecCc
Confidence 6899999996 9999987 65555555 45653 33333 778899999999999995443
No 201
>2dgd_A 223AA long hypothetical arylmalonate decarboxylas; octamer, alpha/beta structure, lyase; 2.90A {Sulfolobus tokodaii}
Probab=90.25 E-value=1.7 Score=43.20 Aligned_cols=81 Identities=5% Similarity=-0.103 Sum_probs=56.3
Q ss_pred HHHHHHHHHHcCCcEEEEEEecCccccchHHHHHHHHHhcCcEEEEEEecCCCC-----CCChHHHHHHHHHHhcC--Cc
Q 002211 170 MSAIAEMVSYFGWGEVIAIFNDDDQGRNGVTALGDKLAEIRCKISYKSALPPDQ-----SVTETDVRNELVKVRMM--EA 242 (953)
Q Consensus 170 ~~ai~~~l~~~~w~~vaii~~d~~~g~~~~~~l~~~l~~~g~~v~~~~~~~~~~-----~~~~~d~~~~l~~i~~~--~~ 242 (953)
..++++.++..|-++|+++. .|+....+.+.+.+++.|+++.......... ..+...+...++++.+. ++
T Consensus 96 ~~a~~~a~~~~g~~rvgvlt---~~~~~~~~~~~~~l~~~G~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ga 172 (223)
T 2dgd_A 96 EESVYELLKKLNVRKLWIGT---PYIKERTLEEVEWWRNKGFEIVGYDGLGKIRGIDISNTPIFTIYRLVKRHLNEVLKA 172 (223)
T ss_dssp HHHHHHHHHHTTCCEEEEEE---SSCHHHHHHHHHHHHTTTCEEEEEEECCCCSHHHHHTCCHHHHHHHHHTTHHHHTTS
T ss_pred HHHHHHHHHHcCCCeEEEEe---CCchHHHHHHHHHHHhCCcEEecccCCCCCCcchhhccCHHHHHHHHHHHhcccCCC
Confidence 45666667778889999996 5666667788889999999986654433210 01245566677777666 89
Q ss_pred eEEEEEcchhh
Q 002211 243 RVIVVHGYSRT 253 (953)
Q Consensus 243 ~vii~~~~~~~ 253 (953)
|+||+.|..-.
T Consensus 173 daIvLgCT~l~ 183 (223)
T 2dgd_A 173 DAVYIACTALS 183 (223)
T ss_dssp SEEEECCTTSC
T ss_pred CEEEEeCCccc
Confidence 99999876543
No 202
>2pfy_A Putative exported protein; extracytoplasmic solute receptor, tripartite ATP independent periplasmic transport, pyroglutamic acid; 1.95A {Bordetella pertussis tohama I}
Probab=90.19 E-value=1.7 Score=45.51 Aligned_cols=87 Identities=9% Similarity=0.002 Sum_probs=53.1
Q ss_pred CCCCChHHhhhCCCeEEEEeCchHHHHHHHhhCCCccceEeCCCHHHHHHHHHcCCcEEEEccchhHHHH-HhcCcceEE
Q 002211 700 SPIKGIDTLMTSNDRVGYQVGSFAENYLIEELSIPKSRLVALGSPEEYAIALENRTVAAVVDERPYIDLF-LSDHCQFSV 778 (953)
Q Consensus 700 ~~I~sl~dL~~~~~~ig~~~~s~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~g~~~a~~~~~~~~~~~-~~~~~~l~~ 778 (953)
.+|++++||. |++|.+. ++.....+ +.++. ..++. ...|...+|++|.+|+.........-. ..+-.++..
T Consensus 129 ~pI~s~~Dlk--G~KiR~~-~~~~~~~~-~~lGa---~pv~~-~~~E~y~ALq~G~vDg~~~~~~~~~~~~~~ev~k~~~ 200 (301)
T 2pfy_A 129 KPVAALADLK--GTRFRAY-SASTSHMA-ALMGA---VPTTV-QTPEVPQAFSTGVIDAMLTSPATGVDSQAWDYVKYYY 200 (301)
T ss_dssp SCCSSGGGGT--TCEEEEC-SHHHHHHH-HHTTS---EEEEC-CGGGHHHHHHTTSCSBEEECHHHHHHTTGGGTCCEEE
T ss_pred CCCCCHHHhC--CCEEeec-ChhHHHHH-HHcCC---cceec-cHHHHHHHHhcceeeeEecCccccccccHHHHhhhhc
Confidence 5899999996 9999987 65555555 45553 33443 778899999999999995443322111 112234333
Q ss_pred eCCccccCccEEEecCC
Q 002211 779 RGQEFTKSGWGFAFPRD 795 (953)
Q Consensus 779 ~~~~~~~~~~~~~~~k~ 795 (953)
.... ......+++.+.
T Consensus 201 ~~~~-~~~~~~~~~n~~ 216 (301)
T 2pfy_A 201 DAQA-FIPQSFVIANKR 216 (301)
T ss_dssp ECCC-CCCEEEEEEEHH
T ss_pred cccc-ccceeeEEEcHH
Confidence 3322 223445666665
No 203
>1ixc_A CBNR, LYSR-type regulatory protein; long alpha helix connecting DNA binding and regulatory domai binding protein; 2.20A {Cupriavidus necator} SCOP: a.4.5.37 c.94.1.1 PDB: 1iz1_A
Probab=90.11 E-value=3.5 Score=42.53 Aligned_cols=84 Identities=8% Similarity=0.023 Sum_probs=57.1
Q ss_pred CcceEEEecCcccccccEEeeCCcceEEEeeHHHHHHHHHhCCCcccEEEeeCCCCCCCCChHHHHHHHHcCceeEEEec
Q 002211 484 GRQLRIGVPNRVSYRDFVFKVNGTDIVHGYCIDVFLAAVRLLPYAVPYKFIPYGDGHKNPTYSELINQITTGVFDAAVGD 563 (953)
Q Consensus 484 g~~lri~v~~~~~~~p~~~~~~~~~~~~G~~~dll~~la~~l~~~~~~~~~~~~~~~~n~~~~~~i~~l~~g~~Di~~~~ 563 (953)
.++||||+.. .+. ..+..+++..+.++.+ .++++... ++..+++..|.+|++|+++..
T Consensus 90 ~g~l~Ig~~~--~~~------------~~~l~~~l~~f~~~~P-~i~l~~~~-------~~~~~~~~~l~~g~~Dl~i~~ 147 (294)
T 1ixc_A 90 VGELSVAYFG--TPI------------YRSLPLLLRAFLTSTP-TATVSLTH-------MTKDEQVEGLLAGTIHVGFSR 147 (294)
T ss_dssp CEEEEEEECS--GGG------------GTHHHHHHHHHHHHCT-TEEEEEEE-------CCHHHHHHHHHHTSCSEEEES
T ss_pred CceEEEEEcc--chh------------HHHHHHHHHHHHHHCC-CcEEEEEe-------CCHHHHHHHHHCCCccEEEEe
Confidence 3679999875 111 2345678888888875 35566655 557789999999999999864
Q ss_pred EEEecCccceeeccccceecceEEEEeccc
Q 002211 564 IAIVTNRTKAVDFTQPYIESGLVVVAPVRK 593 (953)
Q Consensus 564 ~~~t~~r~~~vdft~p~~~~~~~~~v~~~~ 593 (953)
.... ...+. ..|.....++++++...
T Consensus 148 ~~~~---~~~l~-~~~l~~~~~~~v~~~~~ 173 (294)
T 1ixc_A 148 FFPR---HPGIE-IVNIAQEDLYLAVHRSQ 173 (294)
T ss_dssp CCCC---CTTEE-EEEEEEEEEEEEEEGGG
T ss_pred cCCC---CCCce-EEEEeeccEEEEEeCCC
Confidence 3221 12232 35777888888888665
No 204
>2hzl_A Trap-T family sorbitol/mannitol transporter, periplasmic binding protein, SMOM; trap transporter, periplasmic subunit, ligand binding; 1.40A {Rhodobacter sphaeroides 2} PDB: 2hzk_A
Probab=89.08 E-value=1.3 Score=48.09 Aligned_cols=87 Identities=18% Similarity=0.132 Sum_probs=53.7
Q ss_pred CCCCChHHhhhCCCeEEEEeCchHHHHHHHhhCCCccceEeCCCHHHHHHHHHcCCcEEEEccchhHHHH--HhcCcceE
Q 002211 700 SPIKGIDTLMTSNDRVGYQVGSFAENYLIEELSIPKSRLVALGSPEEYAIALENRTVAAVVDERPYIDLF--LSDHCQFS 777 (953)
Q Consensus 700 ~~I~sl~dL~~~~~~ig~~~~s~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~g~~~a~~~~~~~~~~~--~~~~~~l~ 777 (953)
.+|++++||. |++|.+. + .....+ +.++.. .++ -...|...+|++|.+|+.....+...+- ..+-.++.
T Consensus 163 ~pI~s~~DLk--G~KiR~~-~-~~~~~~-~~lGa~---pv~-~~~~e~y~ALq~G~VDg~~~~~p~~~~~~~~~ev~k~~ 233 (365)
T 2hzl_A 163 REINTVADMQ--GLKMRVG-G-FAGKVM-ERLGVV---PQQ-IAGGDIYPALEKGTIDATEWVGPYDDEKLGFFKVAPYY 233 (365)
T ss_dssp SCCCSTGGGT--TCEEECC-T-THHHHH-HTTTCE---EEC-CCTTSHHHHHHHTSCSEECCSCHHHHHHHTGGGTCCEE
T ss_pred CCCCChHHhC--CCEEecC-C-cHHHHH-HHcCCc---cee-cCHHHHHHHHhCCCcceeeccCccchhhcChHHhhhee
Confidence 6899999996 9999988 5 345555 455532 222 2566888999999999998655554321 12233444
Q ss_pred EeCC-ccccCccEEEecCC
Q 002211 778 VRGQ-EFTKSGWGFAFPRD 795 (953)
Q Consensus 778 ~~~~-~~~~~~~~~~~~k~ 795 (953)
.... ........++++++
T Consensus 234 ~~~~~~~~~~~~~~v~n~~ 252 (365)
T 2hzl_A 234 YYPGWWEGGPTVHFMFNKS 252 (365)
T ss_dssp EECBTTCSSCEEEEEEEHH
T ss_pred eccCccccccceEEEEcHH
Confidence 4333 12123446777765
No 205
>3s99_A Basic membrane lipoprotein; ssgcid, structural genomics, SEA structural genomics center for infectious disease, adenine; HET: ADE; 2.05A {Brucella melitensis biovar abortus}
Probab=88.61 E-value=4.2 Score=43.63 Aligned_cols=89 Identities=9% Similarity=-0.005 Sum_probs=69.8
Q ss_pred EEEeEEEecCCCchhHHHHHHHHHHHHHhcCCCCCCCcEEEEEEecCCCChHHHHHHHHHHHhcCcEEEEccCChhhHHH
Q 002211 50 LNVGAIFSFGTVNGQVSRIAMKAAQDDINSDPRVLGGRKLSITMHDAKFNGFLSIMGALQFMETDTLAIVGPQSAVMAHV 129 (953)
Q Consensus 50 i~IG~l~~~~~~~g~~~~~a~~lAve~iN~~g~il~g~~l~l~~~D~~~~~~~a~~~a~~li~~~v~aiiGp~~S~~a~a 129 (953)
=+||.+.....+.......|+..++++.| |..++.+.+..+-.||..+.+++..|+++++.+|+....+. .
T Consensus 150 ~kIGfVgg~~~p~v~~~~~GF~~G~k~~n------p~i~v~~~~~g~~~d~~kg~~~a~~l~~~G~DvIf~~~d~~---G 220 (356)
T 3s99_A 150 GIAGYIGSVPVPEVVQGINSFMLGAQSVN------PDFRVKVIWVNSWFDPGKEADAAKALIDQGVDIITQHTDST---A 220 (356)
T ss_dssp CEEEEEECCCCHHHHHHHHHHHHHHHTTC------TTCEEEEEECSSSCCHHHHHHHHHHHHHTTCSEEEESSSSS---H
T ss_pred CEEEEECCCccHHHHHHHHHHHHHHHHHC------CCCEEEEEECCCCCChHHHHHHHHHHHhCCCcEEEECCCch---H
Confidence 47899987754444456799999999887 45677777776668999999999999999999998765553 4
Q ss_pred HHHhhhhCCCcEEEeecC
Q 002211 130 LSHLANELQVPLLSFTAL 147 (953)
Q Consensus 130 v~~v~~~~~vP~Is~~at 147 (953)
+...+.+.++..|.+...
T Consensus 221 v~~aa~e~Gv~vIG~D~d 238 (356)
T 3s99_A 221 AIQVAHDRGIKAFGQASD 238 (356)
T ss_dssp HHHHHHHTTCEEEEEESC
T ss_pred HHHHHHHcCCEEEEEcCc
Confidence 567778889999987654
No 206
>1i6a_A OXYR, hydrogen peroxide-inducible genes activator; OXYR regulatory domain, oxidized form, transcription; 2.30A {Escherichia coli} SCOP: c.94.1.1 PDB: 1i69_A
Probab=88.19 E-value=0.78 Score=45.19 Aligned_cols=84 Identities=13% Similarity=0.189 Sum_probs=57.8
Q ss_pred CcceEEEecCcccccccEEeeCCcceEEEeeHHHHHHHHHhCCCcccEEEeeCCCCCCCCChHHHHHHHHcCceeEEEec
Q 002211 484 GRQLRIGVPNRVSYRDFVFKVNGTDIVHGYCIDVFLAAVRLLPYAVPYKFIPYGDGHKNPTYSELINQITTGVFDAAVGD 563 (953)
Q Consensus 484 g~~lri~v~~~~~~~p~~~~~~~~~~~~G~~~dll~~la~~l~~~~~~~~~~~~~~~~n~~~~~~i~~l~~g~~Di~~~~ 563 (953)
.++||||+.. .. ...+..+++..+.++.+ .++++... ++..++++.|.+|++|+++..
T Consensus 4 ~g~lrIg~~~--~~------------~~~~l~~~l~~f~~~~P-~v~l~l~~-------~~~~~~~~~l~~g~~Dl~i~~ 61 (219)
T 1i6a_A 4 SGPLHIGLIP--TV------------GPYLLPHIIPMLHQTFP-KLEMYLHE-------AQTHQLLAQLDSGKLDAVILA 61 (219)
T ss_dssp CEEEEEEECT--TT------------HHHHHHHHHHHHHHHCT-TEEEEEEE-------CCHHHHHHHHHHTSCSEEEEE
T ss_pred ceEEEEEecc--ch------------hhhhhhHHHHHHHHHCC-CeEEEEEE-------CChHHHHHHHHcCCeeEEEec
Confidence 3578998874 11 12456778888988886 36666665 568899999999999998852
Q ss_pred EEEecCccceeeccccceecceEEEEeccc
Q 002211 564 IAIVTNRTKAVDFTQPYIESGLVVVAPVRK 593 (953)
Q Consensus 564 ~~~t~~r~~~vdft~p~~~~~~~~~v~~~~ 593 (953)
. ......+. +.|+....++++++...
T Consensus 62 ~---~~~~~~l~-~~~l~~~~~~~v~~~~h 87 (219)
T 1i6a_A 62 L---VKESEAFI-EVPLFDEPMLLAIYEDH 87 (219)
T ss_dssp C---CGGGTTSE-EEEEEEEEEEEEEETTS
T ss_pred C---CCCCCCcc-eeeeecccEEEEEcCCC
Confidence 2 11122233 35778888899888765
No 207
>2fqx_A Membrane lipoprotein TMPC; ABC transport system, ligand-binding protein, guanosine, TP0319, transport protein; HET: GMP; 1.70A {Treponema pallidum} PDB: 2fqw_A* 2fqy_A*
Probab=87.60 E-value=8.6 Score=40.43 Aligned_cols=126 Identities=8% Similarity=-0.021 Sum_probs=81.0
Q ss_pred EEeEEEecCCCchhHHHHHHHHHHHHHhcCCCCCCCcEEEEEEecCCCChHHHHHHHHHHHhcCcEEEEccCChhhHHHH
Q 002211 51 NVGAIFSFGTVNGQVSRIAMKAAQDDINSDPRVLGGRKLSITMHDAKFNGFLSIMGALQFMETDTLAIVGPQSAVMAHVL 130 (953)
Q Consensus 51 ~IG~l~~~~~~~g~~~~~a~~lAve~iN~~g~il~g~~l~l~~~D~~~~~~~a~~~a~~li~~~v~aiiGp~~S~~a~av 130 (953)
+||.+.............|++.++++.|- ..++.+++..+-.++..+.+++.+|+++++.+|+.... ..+..+
T Consensus 131 ~Ig~i~g~~~~~~~~r~~Gf~~~~~~~~~------~~~~~~~~~~~~~~~~~g~~~a~~ll~~~~daI~~~~d-~~a~Gv 203 (318)
T 2fqx_A 131 AVGFIVGMELGMMPLFEAGFEAGVKAVDP------DIQVVVEVANTFSDPQKGQALAAKLYDSGVNVIFQVAG-GTGNGV 203 (318)
T ss_dssp EEEEEESCCSTTTHHHHHHHHHHHHHHCT------TCEEEEEECSCSSCHHHHHHHHHHHHHTTCCEEEEECG-GGHHHH
T ss_pred EEEEEeCcccHHHHHHHHHHHHHHHHHCC------CCEEEEEEccCccCHHHHHHHHHHHHHCCCcEEEECCC-CCchHH
Confidence 68888765444445668999999998862 34555554444457888999999999999999987544 345555
Q ss_pred HHhhhh-----CCCcEEEeecCCCCCCCC---CCCcEEEccCChHHHHHHHHHHHHHcCCc
Q 002211 131 SHLANE-----LQVPLLSFTALDPTLSPL---QYPFFVQTAPNDLYLMSAIAEMVSYFGWG 183 (953)
Q Consensus 131 ~~v~~~-----~~vP~Is~~at~~~ls~~---~~p~~fr~~p~d~~~~~ai~~~l~~~~w~ 183 (953)
...+.+ .++-+|.+.........- ..|.+-.+..+-...+...++.+..-.|+
T Consensus 204 ~~a~~e~g~~P~dv~viG~D~~~~~~~~~~~~~~~~LTsv~~~~~~~~~~a~~~~~~g~~~ 264 (318)
T 2fqx_A 204 IKEARDRRLNGQDVWVIGVDRDQYMDGVYDGSKSVVLTSMVKRADVAAERISKMAYDGSFP 264 (318)
T ss_dssp HHHHHHHHHTTCCCEEEEEESCCGGGGBCSSSCBSEEEEEEECHHHHHHHHHHHHHHTCCC
T ss_pred HHHHHhhhhccCCcEEEEEecchhhhccccCCCCeEEEEEEEEHHHHHHHHHHHHHcCCCC
Confidence 555555 678889886533211100 23455555555566666666666554554
No 208
>3bfj_A 1,3-propanediol oxidoreductase; opportunistic pathogens, decamer, structural genomics,struct proteomics in europe, spine; 2.70A {Klebsiella pneumoniae}
Probab=86.31 E-value=3.9 Score=44.57 Aligned_cols=88 Identities=17% Similarity=0.206 Sum_probs=65.9
Q ss_pred HHHHHHHHcCCcEEEEEEecCcccc--chHHHHHHHHHhcCcEEEEEEecCCCCCCChHHHHHHHHHHhcCCceEEEEEc
Q 002211 172 AIAEMVSYFGWGEVIAIFNDDDQGR--NGVTALGDKLAEIRCKISYKSALPPDQSVTETDVRNELVKVRMMEARVIVVHG 249 (953)
Q Consensus 172 ai~~~l~~~~w~~vaii~~d~~~g~--~~~~~l~~~l~~~g~~v~~~~~~~~~~~~~~~d~~~~l~~i~~~~~~vii~~~ 249 (953)
.+.++++.+|.+++.+|+....+.. +..+.+.+.|++.|+++.....+.++ .+.+.+...+..+++.++|+||-.+
T Consensus 23 ~l~~~l~~~g~~~~livtd~~~~~~~~g~~~~v~~~L~~~g~~~~~~~~~~~~--p~~~~v~~~~~~~~~~~~d~IIavG 100 (387)
T 3bfj_A 23 VVGERCQLLGGKKALLVTDKGLRAIKDGAVDKTLHYLREAGIEVAIFDGVEPN--PKDTNVRDGLAVFRREQCDIIVTVG 100 (387)
T ss_dssp GHHHHHHHTTCSEEEEECCTTTC--CCSSHHHHHHHHHHTTCEEEEECCCCSS--CBHHHHHHHHHHHHHTTCCEEEEEE
T ss_pred HHHHHHHHcCCCEEEEEECcchhhccchHHHHHHHHHHHcCCeEEEECCccCC--CCHHHHHHHHHHHHhcCCCEEEEeC
Confidence 3667778888899999987666555 57899999999999887543444444 5678889999999999999999775
Q ss_pred ch--hhHHHHHHHH
Q 002211 250 YS--RTGLMVFDVA 261 (953)
Q Consensus 250 ~~--~~~~~~~~~a 261 (953)
.+ -|+.+++...
T Consensus 101 GGsv~D~aK~iA~~ 114 (387)
T 3bfj_A 101 GGSPHDCGKGIGIA 114 (387)
T ss_dssp SHHHHHHHHHHHHH
T ss_pred CcchhhHHHHHHHH
Confidence 54 5666666655
No 209
>2qks_A KIR3.1-prokaryotic KIR channel chimera; G-protein gated inward rectifier, potassium channel selectivity filter, metal transport; HET: BNG; 2.20A {Burkholderia xenovorans}
Probab=86.27 E-value=0.97 Score=47.60 Aligned_cols=56 Identities=11% Similarity=0.077 Sum_probs=50.4
Q ss_pred cchhhHHHHHHHhhccccC--CcccchhHHHHHHHHHHHHHhhhhcccceeeeeeecc
Q 002211 642 QIVTVLWFSFSTMFFAHRE--NTVSTLGRVVLIIWLFVVLIITSSYTASLTSILTVQQ 697 (953)
Q Consensus 642 ~~~~~~~~~~~~l~~~~~~--~~~s~~~R~l~~~w~~~~lil~~~Yta~L~s~Lt~~~ 697 (953)
++.+++||++.++...|.. .|.+..+|++.+++.++++++.+.-++.+++.++.+.
T Consensus 78 s~~~a~y~s~vT~tTVGYGDi~P~t~~gr~~~~~~~l~G~~~~a~~~g~i~~~~~~~~ 135 (321)
T 2qks_A 78 GFGGAFFFSVETLATVGYGDMHPQTVYAHWIATLEIFVGMSSIALATGCAFIKMSQPK 135 (321)
T ss_dssp THHHHHHHHHHHHTTCCCCSSCBCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCC
T ss_pred chhheeeeeeEEeccccCCCcCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 6889999999999988744 7899999999999999999999999999999887764
No 210
>1uth_A LYSR-type regulatory protein; transcription regulation, transcriptional regulator; 2.2A {Burkholderia SP} SCOP: c.94.1.1 PDB: 1utb_A 1utb_B 1uth_B 2uyf_A 2uye_A
Probab=86.25 E-value=7.2 Score=40.74 Aligned_cols=83 Identities=12% Similarity=0.171 Sum_probs=53.9
Q ss_pred cceEEEecCcccccccEEeeCCcceEEEeeHHHHHHHHHhCCCcccEEEeeCCCCCCCCChHHHHHHHHcCceeEEEecE
Q 002211 485 RQLRIGVPNRVSYRDFVFKVNGTDIVHGYCIDVFLAAVRLLPYAVPYKFIPYGDGHKNPTYSELINQITTGVFDAAVGDI 564 (953)
Q Consensus 485 ~~lri~v~~~~~~~p~~~~~~~~~~~~G~~~dll~~la~~l~~~~~~~~~~~~~~~~n~~~~~~i~~l~~g~~Di~~~~~ 564 (953)
++||||+.. .. ...+...++..+.++.+ .++++... ++..+++..|.+|++|+++...
T Consensus 105 ~~l~Ig~~~--~~------------~~~~l~~~l~~f~~~~P-~v~l~l~~-------~~~~~~~~~l~~g~~Dl~i~~~ 162 (315)
T 1uth_A 105 RTFNLAMTD--IG------------EMYFMPPLMEALAQRAP-HIQISTLR-------PNAGNLKEDMESGAVDLALGLL 162 (315)
T ss_dssp CEEEEECCH--HH------------HHHHHHHHHHHHHHHCT-TCEEEEEC-------TTSSCHHHHHHHTSCCEEEECC
T ss_pred eEEEEEech--HH------------HHHHHHHHHHHHHHHCC-CcEEEEEe-------CCcccHHHHHHCCCCCEEEecC
Confidence 579998863 11 11345677888888875 25566554 4567899999999999988632
Q ss_pred EEecCccceeeccccceecceEEEEeccc
Q 002211 565 AIVTNRTKAVDFTQPYIESGLVVVAPVRK 593 (953)
Q Consensus 565 ~~t~~r~~~vdft~p~~~~~~~~~v~~~~ 593 (953)
. .....+. ..|+....++++++...
T Consensus 163 ~---~~~~~l~-~~~l~~~~~~~v~~~~h 187 (315)
T 1uth_A 163 P---ELQTGFF-QRRLFRHRYVCMFRKDH 187 (315)
T ss_dssp T---TCCTTEE-EEEEEEECEEEEEETTC
T ss_pred C---CCCCCce-EEEeeccceEEEEeCCC
Confidence 1 1112222 45677788888887655
No 211
>3ox4_A Alcohol dehydrogenase 2; iron, NAD, oxidoreductase; HET: NAD; 2.00A {Zymomonas mobilis} PDB: 3owo_A*
Probab=86.24 E-value=3.2 Score=45.11 Aligned_cols=90 Identities=11% Similarity=0.072 Sum_probs=68.7
Q ss_pred HHHHHHHHHcCCcEEEEEEecCccccchHHHHHHHHHhcCcEEEEEEecCCCCCCChHHHHHHHHHHhcCCceEEEEEcc
Q 002211 171 SAIAEMVSYFGWGEVIAIFNDDDQGRNGVTALGDKLAEIRCKISYKSALPPDQSVTETDVRNELVKVRMMEARVIVVHGY 250 (953)
Q Consensus 171 ~ai~~~l~~~~w~~vaii~~d~~~g~~~~~~l~~~l~~~g~~v~~~~~~~~~~~~~~~d~~~~l~~i~~~~~~vii~~~~ 250 (953)
..+.++++.+|.+++.+|+.......+..+.+.+.|++.|+++.....+.++ .+.+.+...++.+++.++|+||-.+.
T Consensus 20 ~~l~~~~~~~g~~~~liVtd~~~~~~g~~~~v~~~L~~~gi~~~~~~~v~~~--p~~~~v~~~~~~~~~~~~D~IIavGG 97 (383)
T 3ox4_A 20 EKAIKDLNGSGFKNALIVSDAFMNKSGVVKQVADLLKAQGINSAVYDGVMPN--PTVTAVLEGLKILKDNNSDFVISLGG 97 (383)
T ss_dssp HHHHHTTTTSCCCEEEEEEEHHHHHTTHHHHHHHHHHTTTCEEEEEEEECSS--CBHHHHHHHHHHHHHHTCSEEEEEES
T ss_pred HHHHHHHHHcCCCEEEEEECCchhhCchHHHHHHHHHHcCCeEEEECCccCC--CCHHHHHHHHHHHHhcCcCEEEEeCC
Confidence 4567778889999999998765444446888999999999887554445555 56788889999999999999998766
Q ss_pred h--hhHHHHHHHHH
Q 002211 251 S--RTGLMVFDVAQ 262 (953)
Q Consensus 251 ~--~~~~~~~~~a~ 262 (953)
+ -|+.+++....
T Consensus 98 Gsv~D~aK~ia~~~ 111 (383)
T 3ox4_A 98 GSPHDCAKAIALVA 111 (383)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHH
Confidence 5 56677766655
No 212
>2eq5_A 228AA long hypothetical hydantoin racemase; structural genomics, NPPSFA, national project on P structural and functional analyses; 2.20A {Pyrococcus horikoshii}
Probab=85.60 E-value=6.3 Score=39.15 Aligned_cols=115 Identities=13% Similarity=0.126 Sum_probs=67.6
Q ss_pred HHHHHhcCcEEEEccCChhhHHHHHHhhhhCCCcEEEeecCCCCCCCCCCCcEEEccCChHHHHHHHHHHHHHcCCcEEE
Q 002211 107 ALQFMETDTLAIVGPQSAVMAHVLSHLANELQVPLLSFTALDPTLSPLQYPFFVQTAPNDLYLMSAIAEMVSYFGWGEVI 186 (953)
Q Consensus 107 a~~li~~~v~aiiGp~~S~~a~av~~v~~~~~vP~Is~~at~~~ls~~~~p~~fr~~p~d~~~~~ai~~~l~~~~w~~va 186 (953)
+..|.+.++.+|+-+.++. .++..+-+..++|+++.. .+.++.....| ++|+
T Consensus 68 ~~~l~~~g~d~iviaCnta--~~~~~l~~~~~iPvi~i~-------------------------~~~~~~a~~~~-~rig 119 (228)
T 2eq5_A 68 AKEFEREGVDAIIISCAAD--PAVEKVRKLLSIPVIGAG-------------------------SSVSALALAYG-RRVG 119 (228)
T ss_dssp HHHHHHTTCSEEEECSTTC--TTHHHHHHHCSSCEEEHH-------------------------HHHHHHHHTTC-SSEE
T ss_pred HHHHHHCCCCEEEEeCCch--HHHHHHHHhCCCCEeCcc-------------------------HHHHHHHHHhC-CeEE
Confidence 4455556899998877666 555566677789988631 11222223456 8999
Q ss_pred EEEecCccccchHHHHHHHH-HhcCcEEEEEEe--c-CCCCCCChHHHHHHHHHHhcCCceEEEEEcchhh
Q 002211 187 AIFNDDDQGRNGVTALGDKL-AEIRCKISYKSA--L-PPDQSVTETDVRNELVKVRMMEARVIVVHGYSRT 253 (953)
Q Consensus 187 ii~~d~~~g~~~~~~l~~~l-~~~g~~v~~~~~--~-~~~~~~~~~d~~~~l~~i~~~~~~vii~~~~~~~ 253 (953)
++....... ..+.+.+ ++.|.++..... + ..........+...+.++.+.++|+||+.|..-.
T Consensus 120 Vlat~~t~~----~~~~~~~~~~~g~~~~~~~~~~v~~~~~~~~~~~l~~~~~~l~~~~~d~IvLgCT~~~ 186 (228)
T 2eq5_A 120 VLNLTEETP----KVIRSILGNNLIAEDHPSGVSNTLDLLTDWGRREVINAAKRLKEKGVEVIALGCTGMS 186 (228)
T ss_dssp EECSSSCCC----HHHHHHHGGGEEEEECCTTCCSGGGGGSHHHHHHHHHHHHHHHHTTCSEEEECCTHHH
T ss_pred EEecCcccH----HHHHHHHHHHhCccccCCceeeHHHhcChHHHHHHHHHHHHHHHcCCCEEEECCCCcc
Confidence 998754322 3567788 777776421100 0 0000001233556666776678999999877643
No 213
>3beh_A MLL3241 protein; transmembrane protein, membrane protein; HET: LDA; 3.10A {Mesorhizobium loti} PDB: 2zd9_A*
Probab=85.46 E-value=0.48 Score=51.24 Aligned_cols=74 Identities=16% Similarity=0.203 Sum_probs=57.3
Q ss_pred HHHHHHhhhhhcccCCCCCCCCcccchhhHHHHHHHhhccccC--CcccchhHHHHHHHHHHHHHhhhhcccceeeeeee
Q 002211 618 LVVGTVVWILEHRLNDEFRGPPRKQIVTVLWFSFSTMFFAHRE--NTVSTLGRVVLIIWLFVVLIITSSYTASLTSILTV 695 (953)
Q Consensus 618 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~--~~~s~~~R~l~~~w~~~~lil~~~Yta~L~s~Lt~ 695 (953)
++.+++.+.+++..+++ ...++.+++|+++.++...|.. .|.+..+|++.+++.++++++.+...+.+++.+..
T Consensus 141 ~~~a~~~~~~e~~~~~~----~f~~~~~s~y~~~~t~ttvGygd~~p~t~~~~~~~~~~~~~g~~~~~~~~~~i~~~~~~ 216 (355)
T 3beh_A 141 FAVALAAYVIERDIQPE----KFGSIPQAMWWAVVTLSTTGYGDTIPQSFAGRVLAGAVMMSGIGIFGLWAGILATGFYQ 216 (355)
T ss_dssp HHHHHHHHHHHTTTCHH----HHSSHHHHHHHHHHHHTTCCCSSSCCCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhhcCCCCc----ccccHHHHHHHHHhheeecCCCCCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34456667777643221 1235789999999999988733 78999999999999999999999999999877653
No 214
>1twy_A ABC transporter, periplasmic substrate-binding PR; nysgxrc target, structural genomics, protei structure initiative, PSI; 1.65A {Vibrio cholerae o1 biovar eltor} SCOP: c.94.1.1
Probab=84.78 E-value=25 Score=35.60 Aligned_cols=71 Identities=14% Similarity=0.049 Sum_probs=46.5
Q ss_pred eHHHHHHHHHhCCCcccEEEeeCCCCCCCCChHHHHHHHHcCceeEEEecEEEecCcc-ceeeccccceecceEEEEecc
Q 002211 514 CIDVFLAAVRLLPYAVPYKFIPYGDGHKNPTYSELINQITTGVFDAAVGDIAIVTNRT-KAVDFTQPYIESGLVVVAPVR 592 (953)
Q Consensus 514 ~~dll~~la~~l~~~~~~~~~~~~~~~~n~~~~~~i~~l~~g~~Di~~~~~~~t~~r~-~~vdft~p~~~~~~~~~v~~~ 592 (953)
-.+++..+.++.+ .++++... ++..+++..|.+|++|+++.......++. ..+. ..|+....++++++..
T Consensus 42 l~~~l~~f~~~~P-~i~v~i~~-------~~~~~~~~~l~~g~~Di~i~~~~~~~~~~~~~~~-~~~l~~~~~~~v~~~~ 112 (290)
T 1twy_A 42 MDVLAEKYNQQHP-ETYVAVQG-------VGSTAGISLLKKGVADIAMTSRYLTESEAQNTLH-TFTLAFDGLAIVVNQA 112 (290)
T ss_dssp HHHHHHHHHHHCT-TCEEEEEE-------SCHHHHHHHHHTTSCSEEEESSCCCTTTCCTTCE-EEEEEEEEEEEEECTT
T ss_pred HHHHHHHHHhhCC-CceEEEEe-------cCcHHHHHHHhcCCCcEEEecCCCchhhhhcCce-EEEEEeeeEEEEECCC
Confidence 4567888888873 14455544 55789999999999999886432222110 1222 3577888888888765
Q ss_pred c
Q 002211 593 K 593 (953)
Q Consensus 593 ~ 593 (953)
.
T Consensus 113 ~ 113 (290)
T 1twy_A 113 N 113 (290)
T ss_dssp C
T ss_pred C
Confidence 5
No 215
>2h9b_A HTH-type transcriptional regulator BENM; LTTR, transcriptional activator, LYSR-type transcripti regulator; 1.80A {Acinetobacter SP} PDB: 2h99_A 3k1m_A 3k1n_A 3k1p_A 2f7a_A* 2f6p_A 2f78_A 2f6g_A* 2f8d_A 2f97_A*
Probab=83.51 E-value=33 Score=35.44 Aligned_cols=82 Identities=17% Similarity=0.221 Sum_probs=55.6
Q ss_pred ceEEEecCcccccccEEeeCCcceEEEeeHHHHHHHHHhCCCcccEEEeeCCCCCCCCChHHHHHHHHcCceeEEEecEE
Q 002211 486 QLRIGVPNRVSYRDFVFKVNGTDIVHGYCIDVFLAAVRLLPYAVPYKFIPYGDGHKNPTYSELINQITTGVFDAAVGDIA 565 (953)
Q Consensus 486 ~lri~v~~~~~~~p~~~~~~~~~~~~G~~~dll~~la~~l~~~~~~~~~~~~~~~~n~~~~~~i~~l~~g~~Di~~~~~~ 565 (953)
+||||+.. .+. ..+..+++..+.++.+ .++++... ++.++++..|.+|++|+++....
T Consensus 91 ~l~Ig~~~--~~~------------~~~l~~~l~~f~~~~P-~v~i~l~~-------~~~~~~~~~l~~g~~Dlai~~~~ 148 (312)
T 2h9b_A 91 TIRIGFVG--SLL------------FGLLPRIIHLYRQAHP-NLRIELYE-------MGTKAQTEALKEGRIDAGFGRLK 148 (312)
T ss_dssp EEEEEECG--GGG------------GTTHHHHHHHHHHTCT-TCEEEEEE-------CCHHHHHHHHHTTSCSEEEESSC
T ss_pred eEEEEech--hhh------------HhhHHHHHHHHHHHCC-CcEEEEEe-------CCHHHHHHHHHcCCCCEEEEeCC
Confidence 79998874 111 1455678888888875 35566654 56889999999999999986432
Q ss_pred EecCccceeeccccceecceEEEEeccc
Q 002211 566 IVTNRTKAVDFTQPYIESGLVVVAPVRK 593 (953)
Q Consensus 566 ~t~~r~~~vdft~p~~~~~~~~~v~~~~ 593 (953)
.. ...+. ..++....++++++...
T Consensus 149 ~~---~~~l~-~~~L~~~~~~~v~~~~h 172 (312)
T 2h9b_A 149 IS---DPAIK-HSLLRNERLMVAVHASH 172 (312)
T ss_dssp CC---CTTEE-EEEEEEEEEEEEEETTS
T ss_pred CC---CCCce-EEEeecceEEEEEcCCC
Confidence 21 11222 35777888888888654
No 216
>2hqb_A Transcriptional activator of COMK gene; berkeley structure genomics center target 1957B, structural genomics, PSI; 2.70A {Bacillus halodurans}
Probab=83.20 E-value=13 Score=38.63 Aligned_cols=120 Identities=8% Similarity=-0.061 Sum_probs=77.5
Q ss_pred EEeEEEecCCCchhHHHHHHHHHHHHHhcCCCCCCCcEEEEEEecCCCChHHHHHHHHHHHhcCcEEEEccCChhhHHHH
Q 002211 51 NVGAIFSFGTVNGQVSRIAMKAAQDDINSDPRVLGGRKLSITMHDAKFNGFLSIMGALQFMETDTLAIVGPQSAVMAHVL 130 (953)
Q Consensus 51 ~IG~l~~~~~~~g~~~~~a~~lAve~iN~~g~il~g~~l~l~~~D~~~~~~~a~~~a~~li~~~v~aiiGp~~S~~a~av 130 (953)
+||.+....... ...|++.|+++.| +. ++.+++..+-.++..+.+++.+|+++++.+|+... ...+..+
T Consensus 128 ~Ig~i~g~~~~~---r~~Gf~~~~~~~~------~~-~~~~~~~~~~~~~~~g~~~a~~ll~~~~daI~~~~-D~~a~Gv 196 (296)
T 2hqb_A 128 KVGVIAAFPWQP---EVEGFVDGAKYMN------ES-EAFVRYVGEWTDADKALELFQELQKEQVDVFYPAG-DGYHVPV 196 (296)
T ss_dssp EEEEEESCTTCH---HHHHHHHHHHHTT------CC-EEEEEECSSSSCHHHHHHHHHHHHTTTCCEEECCC-TTTHHHH
T ss_pred eEEEEcCcCchh---hHHHHHHHHHHhC------CC-eEEEEeeccccCHHHHHHHHHHHHHCCCcEEEECC-CCCCHHH
Confidence 688887654322 6789999998876 23 55444444445788899999999998999999754 4455666
Q ss_pred HHhhhhCCCcEEEeecCCCCCCC-CCCCcEEEccCChHHHHHHHHHHHHHcCCcE
Q 002211 131 SHLANELQVPLLSFTALDPTLSP-LQYPFFVQTAPNDLYLMSAIAEMVSYFGWGE 184 (953)
Q Consensus 131 ~~v~~~~~vP~Is~~at~~~ls~-~~~p~~fr~~p~d~~~~~ai~~~l~~~~w~~ 184 (953)
...+.+.++-+|.+.. +. .. ...|.+-.+..+-...+..+++.+..-.|+.
T Consensus 197 ~~a~~e~Gv~viG~D~-~~--~~~~~~~~LTsv~~~~~~~~~~a~~~~~~g~~~~ 248 (296)
T 2hqb_A 197 VEAIKDQGDFAIGYVG-DQ--ADLGGSTILTSTVQHVDDLYVLVAKRFQEGKLES 248 (296)
T ss_dssp HHHHHHHTCEEEEEES-CC--SSSSCSSEEEEEEECHHHHHHHHHHHTTTTCCCC
T ss_pred HHHHHHcCCEEEEEec-ch--hhhCCCeEEEEEEEEhHHHHHHHHHHHHcCCCCC
Confidence 6777888899998865 22 22 1124454444455555555555554445653
No 217
>1jfl_A Aspartate racemase; alpha-beta structure, HOMO-dimer, homologous domains, isomer; 1.90A {Pyrococcus horikoshii} SCOP: c.78.2.1 c.78.2.1 PDB: 2dx7_A* 1iu9_A
Probab=82.60 E-value=10 Score=37.56 Aligned_cols=81 Identities=12% Similarity=0.201 Sum_probs=52.0
Q ss_pred HHHHHHHhcCcEEEEccCChhhHHHHHHhhhhCCCcEEEeecCCCCCCCCCCCcEEEccCChHHHHHHHHHHHHHcCCcE
Q 002211 105 MGALQFMETDTLAIVGPQSAVMAHVLSHLANELQVPLLSFTALDPTLSPLQYPFFVQTAPNDLYLMSAIAEMVSYFGWGE 184 (953)
Q Consensus 105 ~~a~~li~~~v~aiiGp~~S~~a~av~~v~~~~~vP~Is~~at~~~ls~~~~p~~fr~~p~d~~~~~ai~~~l~~~~w~~ 184 (953)
+.+..|.+.++.+|+=+..+.. .++..+-+..++|++.. .++.++.+...+-++
T Consensus 65 ~~~~~l~~~g~d~iviaCnTa~-~~~~~l~~~~~iPvi~i-------------------------~~~~~~~a~~~~~~r 118 (228)
T 1jfl_A 65 WTAKRLEECGADFIIMPCNTAH-AFVEDIRKAIKIPIISM-------------------------IEETAKKVKELGFKK 118 (228)
T ss_dssp HHHHHHHHHTCSEEECSCTGGG-GGHHHHHHHCSSCBCCH-------------------------HHHHHHHHHHTTCSE
T ss_pred HHHHHHHHcCCCEEEEcCccHH-HHHHHHHHhCCCCEech-------------------------HHHHHHHHHHcCCCe
Confidence 4555565669999998887775 55667777788988852 133344444447789
Q ss_pred EEEEEecCccccchHHHHHHHHHhcCcEEE
Q 002211 185 VIAIFNDDDQGRNGVTALGDKLAEIRCKIS 214 (953)
Q Consensus 185 vaii~~d~~~g~~~~~~l~~~l~~~g~~v~ 214 (953)
|+++...... ....+++.+++.|.++.
T Consensus 119 igvlaT~~T~---~~~~y~~~l~~~g~~v~ 145 (228)
T 1jfl_A 119 AGLLATTGTI---VSGVYEKEFSKYGVEIM 145 (228)
T ss_dssp EEEECCHHHH---HHTHHHHHHHHTTCEEE
T ss_pred EEEEecHHHh---hhhHHHHHHHHCCCeEE
Confidence 9999654321 12345666777787753
No 218
>3l6g_A Betaine ABC transporter permease and substrate BI protein; glycine betaine binding, substrate binding domain, venus FLY cell membrane; HET: B3P; 1.90A {Lactococcus lactis} PDB: 3l6h_A
Probab=81.83 E-value=5.7 Score=40.33 Aligned_cols=98 Identities=10% Similarity=0.093 Sum_probs=54.7
Q ss_pred eeeccccCCCCChHHhhhC--CCeEEEEeCchHHHHHH---Hhh-CCCccceEeCCCHHH----HHHHHHcCCcEEEEcc
Q 002211 693 LTVQQLSSPIKGIDTLMTS--NDRVGYQVGSFAENYLI---EEL-SIPKSRLVALGSPEE----YAIALENRTVAAVVDE 762 (953)
Q Consensus 693 Lt~~~~~~~I~sl~dL~~~--~~~ig~~~~s~~~~~l~---~~~-~~~~~~~~~~~~~~~----~~~~l~~g~~~a~~~~ 762 (953)
|.++++. .|+|++||.+. ++.+|+..|........ +.+ ++...+++. .+... ..+++++|+.+++..-
T Consensus 88 l~Vp~~~-~i~si~DL~~~~~g~~~g~~~G~~~~~~~~~~l~~y~gL~~~~~v~-~s~~~m~~~l~~A~~~g~~~v~~~w 165 (256)
T 3l6g_A 88 FVVPSYM-NVNSIEDLTNQANKTITGIEPGAGVMAASEKTLNSYDNLKDWKLVP-SSSGAMTVALGEAIKQHKDIVITGW 165 (256)
T ss_dssp EEEETTS-CCCBGGGCSSGGGGEEECCCTTCHHHHHHHHHHTTCGGGTTCEEEC-CCHHHHHHHHHHHHHTTCCCCEEEE
T ss_pred EEECCcc-CCCCHHHHHHhcCCeEEecCCCchhhHHHHHHHHhcCCCCCeEEec-CCHHHHHHHHHHHHHCCCCEEEEee
Confidence 3444444 79999999532 55678887775443222 344 443122322 23332 3477888999999887
Q ss_pred chhHHHHHhcCcceEEeCCc---cc-cCccEEEecCC
Q 002211 763 RPYIDLFLSDHCQFSVRGQE---FT-KSGWGFAFPRD 795 (953)
Q Consensus 763 ~~~~~~~~~~~~~l~~~~~~---~~-~~~~~~~~~k~ 795 (953)
.+....-. .+++.+..+ |. +.....+++++
T Consensus 166 ~p~~~~~~---~~l~~LeDpk~~~~~~~~~~~vvr~~ 199 (256)
T 3l6g_A 166 SPHWMFNK---YDLKYLADPKGTMGTSENINTIVRKG 199 (256)
T ss_dssp ESCTHHHH---SCEEECBCTTCTTCCCEEEEEEEETT
T ss_pred cCchhhhh---cCeEEecCCccccCCcceEEEeechh
Confidence 77665432 156666432 22 23445566665
No 219
>2r9r_B Paddle chimera voltage gated potassium channel KV; voltage sensor, voltage dependent, ION CH shaker, membrane protein, eukaryotic; HET: NAP PGW; 2.40A {Rattus norvegicus} PDB: 3lnm_B* 3lut_B* 2a79_B*
Probab=81.71 E-value=1.1 Score=50.80 Aligned_cols=72 Identities=13% Similarity=0.163 Sum_probs=54.5
Q ss_pred HHHHhhhhhcccCCCCCCCCcccchhhHHHHHHHhhccccC--CcccchhHHHHHHHHHHHHHhhhhcccceeeeeee
Q 002211 620 VGTVVWILEHRLNDEFRGPPRKQIVTVLWFSFSTMFFAHRE--NTVSTLGRVVLIIWLFVVLIITSSYTASLTSILTV 695 (953)
Q Consensus 620 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~--~~~s~~~R~l~~~w~~~~lil~~~Yta~L~s~Lt~ 695 (953)
.+.+.+..+... ......++..++|+++.++...|.. .|.+..+|++.++++++++++.+.+.|.+.+-+..
T Consensus 357 f~~~~~~~e~~~----~~~~F~s~~~a~y~~~vT~TTvGYGDi~P~t~~gr~f~~~~~l~G~~~l~l~iavI~~~f~~ 430 (514)
T 2r9r_B 357 FSSAVYFAEADE----RDSQFPSIPDAFWWAVVSMTTVGYGDMVPTTIGGKIVGSLCAIAGVLTIALPVPVIVSNFNY 430 (514)
T ss_dssp HHHHHHHHHTTC----TTCSCSSHHHHHHHHHHHHTTCCCSSSCCCSHHHHHHHHHHHHHHHHHHHTTHHHHHHHHHH
T ss_pred HHhhhheeeccC----CCccccchhhhhheeeeEEEecccCCCCCCCcchHhhehhHHHHHHHHHHHHHHHHHHHHHH
Confidence 344455555322 2233456889999999999988743 78888999999999999999999999988875544
No 220
>2h98_A HTH-type transcriptional regulator CATM; BENM, LTTR; 1.80A {Acinetobacter SP} PDB: 2h9q_A* 2f7b_A 2f7c_A* 3glb_A* 3m1e_A
Probab=81.47 E-value=47 Score=34.30 Aligned_cols=82 Identities=20% Similarity=0.245 Sum_probs=55.3
Q ss_pred ceEEEecCcccccccEEeeCCcceEEEeeHHHHHHHHHhCCCcccEEEeeCCCCCCCCChHHHHHHHHcCceeEEEecEE
Q 002211 486 QLRIGVPNRVSYRDFVFKVNGTDIVHGYCIDVFLAAVRLLPYAVPYKFIPYGDGHKNPTYSELINQITTGVFDAAVGDIA 565 (953)
Q Consensus 486 ~lri~v~~~~~~~p~~~~~~~~~~~~G~~~dll~~la~~l~~~~~~~~~~~~~~~~n~~~~~~i~~l~~g~~Di~~~~~~ 565 (953)
+||||+.. .+. ..+...++..+.++.+ .++++... ++..+++..|.+|++|+++....
T Consensus 91 ~l~Ig~~~--~~~------------~~~l~~~l~~f~~~~P-~v~l~l~~-------~~~~~~~~~l~~g~~Dlai~~~~ 148 (313)
T 2h98_A 91 TLRIGYVS--SLL------------YGLLPEIIYLFRQQNP-EIHIELIE-------CGTKDQINALKQGKIDLGFGRLK 148 (313)
T ss_dssp EEEEEECG--GGG------------GTTHHHHHHHHHHHCT-TSEEEEEE-------CCHHHHHHHHHHTSCSEEEESSC
T ss_pred EEEEEech--HhH------------HhHHHHHHHHHHHHCC-CeEEEEEe-------CChHHHHHHHHcCCCCEEEEeCC
Confidence 79999874 111 1356678888888875 25566554 56789999999999999986322
Q ss_pred EecCccceeeccccceecceEEEEeccc
Q 002211 566 IVTNRTKAVDFTQPYIESGLVVVAPVRK 593 (953)
Q Consensus 566 ~t~~r~~~vdft~p~~~~~~~~~v~~~~ 593 (953)
.. ...+. ..++....++++++...
T Consensus 149 ~~---~~~l~-~~~L~~~~~~~v~~~~h 172 (313)
T 2h98_A 149 IT---DPAIR-RIMLHKEQLKLAIHKHH 172 (313)
T ss_dssp CC---CTTEE-EEEEEEEEEEEEEETTS
T ss_pred CC---CCCee-EEEeeeCcEEEEEcCCC
Confidence 11 12222 45777888888887654
No 221
>3k6v_A Solute-binding protein MA_0280; MODA, molybdate, periplasmic BIN protein, ABC transporter, transport protein, ligand, metal- protein; HET: CIT; 1.69A {Methanosarcina acetivorans} PDB: 3k6u_A* 3k6w_A 3k6x_A
Probab=81.41 E-value=31 Score=36.74 Aligned_cols=69 Identities=9% Similarity=0.041 Sum_probs=43.5
Q ss_pred HHHHHHHHhC-CCcccEEEeeCCCCCCCCChHHHHHHHH-cC-ceeEEEecEEEecCcc---ceeeccccceecceEEEE
Q 002211 516 DVFLAAVRLL-PYAVPYKFIPYGDGHKNPTYSELINQIT-TG-VFDAAVGDIAIVTNRT---KAVDFTQPYIESGLVVVA 589 (953)
Q Consensus 516 dll~~la~~l-~~~~~~~~~~~~~~~~n~~~~~~i~~l~-~g-~~Di~~~~~~~t~~r~---~~vdft~p~~~~~~~~~v 589 (953)
++.+.+.++. |.++++.+- .-..++.++. .| .+|+.++.-.-..++. ...+...+|....+++++
T Consensus 59 ~l~~~Fe~~~pgv~V~~~~g---------gSg~l~~qi~e~G~~aDVf~sad~~~~~~l~~~g~~~~~~~~a~n~lVliv 129 (354)
T 3k6v_A 59 ELEAEFEAQHPGVDVQREAA---------GSAQSVRKITELGKKADVLASADYALIPSLMVPEYADWYAAFARNQMILAY 129 (354)
T ss_dssp HHHHHHHHHSTTCEEEEEEE---------CHHHHHHHHHTSCCCCSEEEESSTTHHHHHTTTTTCSCEEEEEECCEEEEE
T ss_pred HHHHHHHHHCCCcEEEEEeC---------CHHHHHHHHHhcCCCccEEEECCHHHHHHHHhCCCCCCceEeECCeEEEEE
Confidence 6777888888 877666553 2457778885 35 6898765321111111 123345678888999999
Q ss_pred eccc
Q 002211 590 PVRK 593 (953)
Q Consensus 590 ~~~~ 593 (953)
|+..
T Consensus 130 ~~~~ 133 (354)
T 3k6v_A 130 TNES 133 (354)
T ss_dssp CTTS
T ss_pred ECCC
Confidence 8776
No 222
>1rrm_A Lactaldehyde reductase; structural genomics, dehydrogenase, PSI, protein structure initiative; HET: APR; 1.60A {Escherichia coli} SCOP: e.22.1.2 PDB: 2bi4_A* 2bl4_A*
Probab=80.79 E-value=6.1 Score=42.94 Aligned_cols=89 Identities=15% Similarity=0.142 Sum_probs=66.4
Q ss_pred HHHHHHHHcCCcEEEEEEecCccccchHHHHHHHHHhcCcEEEEEEecCCCCCCChHHHHHHHHHHhcCCceEEEEEcch
Q 002211 172 AIAEMVSYFGWGEVIAIFNDDDQGRNGVTALGDKLAEIRCKISYKSALPPDQSVTETDVRNELVKVRMMEARVIVVHGYS 251 (953)
Q Consensus 172 ai~~~l~~~~w~~vaii~~d~~~g~~~~~~l~~~l~~~g~~v~~~~~~~~~~~~~~~d~~~~l~~i~~~~~~vii~~~~~ 251 (953)
.+.++++.+|.+++.+|+....+..+..+.+.+.|++.|+++.....+.++ .+.+.+...++.+++.++|+||-.+.+
T Consensus 21 ~l~~~l~~~g~~~~livtd~~~~~~g~~~~v~~~L~~~g~~~~~~~~~~~~--p~~~~v~~~~~~~~~~~~d~IIavGGG 98 (386)
T 1rrm_A 21 ALTDEVKRRGYQKALIVTDKTLVQCGVVAKVTDKMDAAGLAWAIYDGVVPN--PTITVVKEGLGVFQNSGADYLIAIGGG 98 (386)
T ss_dssp GHHHHHHHHTCCEEEEECBHHHHHTTHHHHHHHHHHHTTCEEEEECBCCSS--CBHHHHHHHHHHHHHHTCSEEEEEESH
T ss_pred HHHHHHHHcCCCEEEEEECcchhhchHHHHHHHHHHHcCCeEEEECCccCC--CCHHHHHHHHHHHHhcCcCEEEEeCCh
Confidence 366777778889999988654444457888999999999887544445544 567888889999999999999977554
Q ss_pred --hhHHHHHHHHH
Q 002211 252 --RTGLMVFDVAQ 262 (953)
Q Consensus 252 --~~~~~~~~~a~ 262 (953)
-|+.+++....
T Consensus 99 sv~D~aK~iA~~~ 111 (386)
T 1rrm_A 99 SPQDTCKAIGIIS 111 (386)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 56777776655
No 223
>2zsk_A PH1733, 226AA long hypothetical aspartate racemase; alpha/beta fold, unknown function; 2.55A {Pyrococcus horikoshii}
Probab=80.57 E-value=7.6 Score=38.52 Aligned_cols=79 Identities=16% Similarity=0.153 Sum_probs=50.8
Q ss_pred HHHHHhcCcEEEEccCChhhHHHHHHhhhhCCCcEEEeecCCCCCCCCCCCcEEEccCChHHHHHHHHHHHHHcCCcEEE
Q 002211 107 ALQFMETDTLAIVGPQSAVMAHVLSHLANELQVPLLSFTALDPTLSPLQYPFFVQTAPNDLYLMSAIAEMVSYFGWGEVI 186 (953)
Q Consensus 107 a~~li~~~v~aiiGp~~S~~a~av~~v~~~~~vP~Is~~at~~~ls~~~~p~~fr~~p~d~~~~~ai~~~l~~~~w~~va 186 (953)
+..|.+.++.+|+-+..+.... +..+-+..++|++.. .++.++.+...+-++|+
T Consensus 66 ~~~L~~~g~d~iviaCnTa~~~-~~~l~~~~~iPvi~i-------------------------~~a~~~~~~~~~~~rig 119 (226)
T 2zsk_A 66 AKALERAGAELIAFAANTPHLV-FDDVQREVNVPMVSI-------------------------IDAVAEEILKRGVRKVL 119 (226)
T ss_dssp HHHHHHHTCSEEEESSSGGGGG-HHHHHHHCSSCBCCH-------------------------HHHHHHHHHHTTCCEEE
T ss_pred HHHHHHcCCCEEEECCCcHHHH-HHHHHHhCCCCEecc-------------------------HHHHHHHHHHcCCCeEE
Confidence 3344445999999887776543 456667778888852 24444444555779999
Q ss_pred EEEecCccccchHHHHHHHHHhcCcEEE
Q 002211 187 AIFNDDDQGRNGVTALGDKLAEIRCKIS 214 (953)
Q Consensus 187 ii~~d~~~g~~~~~~l~~~l~~~g~~v~ 214 (953)
++....... ...+++.+++.|+++.
T Consensus 120 vlaT~~T~~---~~~y~~~l~~~g~~v~ 144 (226)
T 2zsk_A 120 LLGTKTTMT---ADFYIKTLEEKGLEVV 144 (226)
T ss_dssp EESSTTTTS---CHHHHHHHHTTTCEEE
T ss_pred EEeCHHHHh---hhHHHHHHHHCCCEEE
Confidence 997533222 2356777788888764
No 224
>3hhf_B Transcriptional regulator, LYSR family; transcription factor, structur genomics, oxford protein production facility, OPPF; 2.30A {Neisseria meningitidis serogroup B}
Probab=80.12 E-value=2.5 Score=40.84 Aligned_cols=81 Identities=11% Similarity=0.064 Sum_probs=50.1
Q ss_pred CcceEEEecCcccccccEEeeCCcceEEEeeHHHHHHHHHhCCCcccEEEeeCCCCCCCCChHHHHHHHHcCceeEEEec
Q 002211 484 GRQLRIGVPNRVSYRDFVFKVNGTDIVHGYCIDVFLAAVRLLPYAVPYKFIPYGDGHKNPTYSELINQITTGVFDAAVGD 563 (953)
Q Consensus 484 g~~lri~v~~~~~~~p~~~~~~~~~~~~G~~~dll~~la~~l~~~~~~~~~~~~~~~~n~~~~~~i~~l~~g~~Di~~~~ 563 (953)
.++||||+.. .. ...+-.+++..+.++.+- ++++... . +.+..|.+|++|+++..
T Consensus 6 ~g~l~Ig~~~--~~------------~~~~l~~~l~~f~~~~P~-v~l~i~~-------~---~~~~~l~~g~~D~~i~~ 60 (213)
T 3hhf_B 6 QGVLSVDSAM--PM------------VLHLLAPLAAKFNERYPH-IRLSLVS-------S---EGYINLIERKVDIALRA 60 (213)
T ss_dssp CEEEEEEECH--HH------------HHHTHHHHHHHHHHHCTT-EEEEEEC-------C---STTHHHHTTSSSEEEEC
T ss_pred CceEEEecCH--HH------------HHHHHHHHHHHHHHHCCC-cEEEEEe-------C---CcHHHHHhCCccEEEEE
Confidence 3578888864 11 123567888889888752 4555542 1 11345889999999874
Q ss_pred EEEecCccceeeccccceecceEEEEeccc
Q 002211 564 IAIVTNRTKAVDFTQPYIESGLVVVAPVRK 593 (953)
Q Consensus 564 ~~~t~~r~~~vdft~p~~~~~~~~~v~~~~ 593 (953)
.... ...+. +.++.+..+++++++..
T Consensus 61 ~~~~---~~~~~-~~~l~~~~~~~v~~~~~ 86 (213)
T 3hhf_B 61 GELD---DSGLR-ARHLFDSRFRVIASPEY 86 (213)
T ss_dssp C--C---CSSEE-EEEEEEECEEEEECHHH
T ss_pred ecCC---Cccce-EEeeecceEEEEeCHHH
Confidence 3222 12232 46788888999887654
No 225
>3kos_A HTH-type transcriptional activator AMPR; alpha-beta sandwich, DNA-binding, transcription regulation; HET: MES; 1.83A {Citrobacter freundii} PDB: 3kot_A
Probab=78.90 E-value=19 Score=34.56 Aligned_cols=106 Identities=10% Similarity=-0.002 Sum_probs=60.4
Q ss_pred CCChHHhhhCCCeEEEEeCchHHHHHHHhhCCCc---cceEeCCCHHHHHHHHHcCCcEEEEccchhHHHHHhcCcceEE
Q 002211 702 IKGIDTLMTSNDRVGYQVGSFAENYLIEELSIPK---SRLVALGSPEEYAIALENRTVAAVVDERPYIDLFLSDHCQFSV 778 (953)
Q Consensus 702 I~sl~dL~~~~~~ig~~~~s~~~~~l~~~~~~~~---~~~~~~~~~~~~~~~l~~g~~~a~~~~~~~~~~~~~~~~~l~~ 778 (953)
.-+++||.+.. -|....++....++.+...... ......++.+.....+..|.--+++-+.....+....... ..
T Consensus 95 ~~~~~~L~~~~-~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~g~Gi~~lp~~~~~~~~~~~~l~-~~ 172 (219)
T 3kos_A 95 IQTPADILKFP-LLRSYRRDEWALWMQTVGEAPPSPTHNVMVFDSSVTMLEAAQAGMGVAIAPVRMFTHLLSSERIV-QP 172 (219)
T ss_dssp CSSGGGGGGSC-EEEESCTTHHHHHHHHTTCCCCCTTSCEEEESCHHHHHHHHHTTSCBEEEEGGGCHHHHHTTSSB-CC
T ss_pred cCCHHHHhcCc-eeccCCccCHHHHHHHcCCCCCccccceeEEccHHHHHHHHHcCCCeEeehHHhhHHHHHcCCee-cc
Confidence 34678887332 2445556666666644332111 2346778999999999998776777665544443222211 12
Q ss_pred eCCccccCccEEEecCCCcchHHHHHHHHhh
Q 002211 779 RGQEFTKSGWGFAFPRDSPLAIDMSTAILTL 809 (953)
Q Consensus 779 ~~~~~~~~~~~~~~~k~spl~~~~n~~i~~l 809 (953)
..+......++++.+++.+....+...+..+
T Consensus 173 ~~~~~~~~~~~l~~~~~~~~~~~~~~f~~~l 203 (219)
T 3kos_A 173 FLTQIDLGSYWITRLQSRPETPAMREFSRWL 203 (219)
T ss_dssp CCCCBCSCEEEEEEETTSCCCHHHHHHHHHH
T ss_pred ccCCccCCcEEEEecccccCCHHHHHHHHHH
Confidence 2222334467888888876665555555444
No 226
>1xs5_A 29 kDa protein, membrane lipoprotein TPN32; periplasmic binding protein, methionine, membrane protein; 1.85A {Treponema pallidum} SCOP: c.94.1.1
Probab=78.19 E-value=31 Score=34.38 Aligned_cols=36 Identities=11% Similarity=0.178 Sum_probs=26.8
Q ss_pred HHHHHHhCCCcccEEEeeCCCCCCCCChHHHHHHHHcCceeEEE
Q 002211 518 FLAAVRLLPYAVPYKFIPYGDGHKNPTYSELINQITTGVFDAAV 561 (953)
Q Consensus 518 l~~la~~l~~~~~~~~~~~~~~~~n~~~~~~i~~l~~g~~Di~~ 561 (953)
++...++.|++ ++.+.| .+|......|.+|++|+..
T Consensus 21 ~~~~~~~~Gl~--ve~~~f------~d~~~~n~AL~~G~iD~n~ 56 (241)
T 1xs5_A 21 AKEEVKKQHIE--LRIVEF------TNYVALNEAVMRGDILMNF 56 (241)
T ss_dssp HHHHHHTTTEE--EEEEEC------SCHHHHHHHHHHTSSSEEE
T ss_pred HHHHHHHcCCe--EEEEEc------CChHHHHHHHHcCCCCEec
Confidence 34455667855 556665 4599999999999999964
No 227
>1nh8_A ATP phosphoribosyltransferase; prtase, de novo His biosynthesis, PRPP, structural genomics, PSI, protei structure initiative; HET: AMP HIS; 1.80A {Mycobacterium tuberculosis H37RV} SCOP: c.94.1.1 d.58.5.3 PDB: 1nh7_A*
Probab=78.12 E-value=7.8 Score=39.81 Aligned_cols=102 Identities=10% Similarity=0.026 Sum_probs=63.3
Q ss_pred CCCChHHhhhCCCeEEEEeCchHHHHHHHhhCCCccceEeCCCHHHHHHHHHcCCcEEEEccchhHHHHHhcCcceEEeC
Q 002211 701 PIKGIDTLMTSNDRVGYQVGSFAENYLIEELSIPKSRLVALGSPEEYAIALENRTVAAVVDERPYIDLFLSDHCQFSVRG 780 (953)
Q Consensus 701 ~I~sl~dL~~~~~~ig~~~~s~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~g~~~a~~~~~~~~~~~~~~~~~l~~~~ 780 (953)
.+++++||. +++|+...-...++||. +.++. .+++.....-|.. ..-|-.|++++-......+.++ +|.+++
T Consensus 120 ~~~~~~~l~--~~RIATkYp~l~r~yf~-~~gi~-~~Ii~l~GsvE~a--P~~GlADaIvDiVsTG~TLraN--gL~~i~ 191 (304)
T 1nh8_A 120 RNWTTADLA--GMRIATAYPNLVRKDLA-TKGIE-ATVIRLDGAVEIS--VQLGVADAIADVVGSGRTLSQH--DLVAFG 191 (304)
T ss_dssp SCCCGGGGT--TCEEEESCHHHHHHHHH-HHTCC-CEEEECSSCCTHH--HHTTSCSEEEEEESSSHHHHHT--TEEEEE
T ss_pred CcCChHHhC--CCEEEeCcHHHHHHHHH-HCCCe-EEEEECCCceeec--cCCCcccEEEEEeCChHHHHHC--cCEEcc
Confidence 345788884 88999998888999995 45654 4555444333332 3348889999877766665443 577775
Q ss_pred CccccCccEEEecCCCc-c--hHHHHHHHHhhh
Q 002211 781 QEFTKSGWGFAFPRDSP-L--AIDMSTAILTLS 810 (953)
Q Consensus 781 ~~~~~~~~~~~~~k~sp-l--~~~~n~~i~~l~ 810 (953)
+.+....-.++.++.+. . .+.++..+.++.
T Consensus 192 e~I~~SsA~LI~n~~s~~~~k~~~i~~l~~rl~ 224 (304)
T 1nh8_A 192 EPLCDSEAVLIERAGTDGQDQTEARDQLVARVQ 224 (304)
T ss_dssp EEEEEECEEEEEEC--------CHHHHHHHHHH
T ss_pred cEEEEEEEEEEEccccchhhhHHHHHHHHHHHH
Confidence 55555556677777762 2 235666666664
No 228
>3onm_A Transcriptional regulator LRHA; LYSR, ROVM, transcription factor, virulence factor; 2.40A {Yersinia pseudotuberculosis}
Probab=78.10 E-value=52 Score=32.00 Aligned_cols=82 Identities=12% Similarity=0.079 Sum_probs=56.8
Q ss_pred CcceEEEecCcccccccEEeeCCcceEEEeeHHHHHHHHHhCCCcccEEEeeCCCCCCCCChHHHHHHHHcCceeEEEec
Q 002211 484 GRQLRIGVPNRVSYRDFVFKVNGTDIVHGYCIDVFLAAVRLLPYAVPYKFIPYGDGHKNPTYSELINQITTGVFDAAVGD 563 (953)
Q Consensus 484 g~~lri~v~~~~~~~p~~~~~~~~~~~~G~~~dll~~la~~l~~~~~~~~~~~~~~~~n~~~~~~i~~l~~g~~Di~~~~ 563 (953)
.++||||+.. .+. ..+..+++..+.++.+ .++++... ++..+++..|.+|++|+++..
T Consensus 26 ~g~l~Ig~~~--~~~------------~~~l~~~l~~f~~~~P-~i~l~i~~-------~~~~~~~~~L~~g~~Dl~i~~ 83 (238)
T 3onm_A 26 EGSLIIGASD--DTA------------DTLLPFLLNRVATLYP-RLAIDVRV-------KRSPFIADMLSSGEVDLAITT 83 (238)
T ss_dssp -CCEEEEECH--HHH------------TTHHHHHHHHHHHHCT-TCCEEEEE-------CCHHHHHHHHHHTSCSEEEEC
T ss_pred ceeEEEeccc--hhh------------HHHHHHHHHHHHHHCC-CcEEEEEE-------CCHHHHHHHHHCCCccEEEEe
Confidence 3679999874 111 2456678888888875 25566654 568899999999999999863
Q ss_pred EEEecCccceeeccccceecceEEEEeccc
Q 002211 564 IAIVTNRTKAVDFTQPYIESGLVVVAPVRK 593 (953)
Q Consensus 564 ~~~t~~r~~~vdft~p~~~~~~~~~v~~~~ 593 (953)
... .. --+.++....+++++++..
T Consensus 84 ~~~-----~~-~~~~~l~~~~~~~v~~~~~ 107 (238)
T 3onm_A 84 AKV-----DS-HPHVILRTSPTLWYCSVDY 107 (238)
T ss_dssp SCC------C-CCEEEEEEECEEEEEETTC
T ss_pred cCC-----CC-cceEEeecCCEEEEEcCCC
Confidence 321 11 2356778888899888765
No 229
>3cij_A UPF0100 protein AF_0094; archaeal periplasmic binding protein, unknown function, metal binding protein, transport protein; 1.07A {Archaeoglobus fulgidus} PDB: 2ons_A 2onk_E 2onr_A
Probab=77.90 E-value=54 Score=33.55 Aligned_cols=70 Identities=11% Similarity=0.003 Sum_probs=44.9
Q ss_pred HHHHHHHHHhC-CCcccEEEeeCCCCCCCCChHHHHHHHHc-Cc-eeEEEecEEEec---CccceeeccccceecceEEE
Q 002211 515 IDVFLAAVRLL-PYAVPYKFIPYGDGHKNPTYSELINQITT-GV-FDAAVGDIAIVT---NRTKAVDFTQPYIESGLVVV 588 (953)
Q Consensus 515 ~dll~~la~~l-~~~~~~~~~~~~~~~~n~~~~~~i~~l~~-g~-~Di~~~~~~~t~---~r~~~vdft~p~~~~~~~~~ 588 (953)
-++++.+.++. |.++++.+ +....++.++.. |. +|+.+..-.... .....++...||....++++
T Consensus 20 ~~l~~~F~~~~~gi~V~~~~---------~~s~~l~~~i~~~g~~~Dv~~~a~~~~~~~l~~~gl~~~~~~~~~~~lvl~ 90 (295)
T 3cij_A 20 KAFKRAFEEKHPNVEVQTEA---------AGSAATIRKVTELGRKADVIATADYTLIQKMMYPEFANWTIMFAKNQIVLA 90 (295)
T ss_dssp HHHHHHHHHHCTTCEEEEEE---------ECHHHHHHHHHTSCCCCSEEEESSTHHHHHHHTTTTCCCCEEEEECCEEEE
T ss_pred HHHHHHHHHHCCCceEEEEe---------CcHHHHHHHHHhCCCCCCEEEEcChhhHHHHHhCCCcceeeEEEeeeEEEE
Confidence 46777777774 87766644 346778899988 75 898775311101 11122345678888889999
Q ss_pred Eeccc
Q 002211 589 APVRK 593 (953)
Q Consensus 589 v~~~~ 593 (953)
+++..
T Consensus 91 ~~~~~ 95 (295)
T 3cij_A 91 YRNDS 95 (295)
T ss_dssp ECTTS
T ss_pred EeCCC
Confidence 88765
No 230
>2hpg_A ABC transporter, periplasmic substrate-binding protein; periplasmic binding protein, thermophilic proteins, trap- transport; HET: MSE; 1.90A {Thermotoga maritima}
Probab=77.65 E-value=1.6 Score=46.34 Aligned_cols=88 Identities=16% Similarity=0.010 Sum_probs=54.7
Q ss_pred CCCCChHHhhhCCCeEEEEeCchHHHHHHHhhCCCccceEeCCCHHHHHHHHHcCCcEEEEccchhHHHH-HhcCcceEE
Q 002211 700 SPIKGIDTLMTSNDRVGYQVGSFAENYLIEELSIPKSRLVALGSPEEYAIALENRTVAAVVDERPYIDLF-LSDHCQFSV 778 (953)
Q Consensus 700 ~~I~sl~dL~~~~~~ig~~~~s~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~g~~~a~~~~~~~~~~~-~~~~~~l~~ 778 (953)
.+|++++||. |++|.+..+......+ +.++.. .++ -...|...+|++|.+|+.....+.+.-. ..+-.++..
T Consensus 148 ~pI~s~~DLk--G~KiRv~~~~~~~~~~-~alGa~---pv~-m~~~Evy~ALq~G~VDg~~~p~~~~~~~~~~ev~ky~~ 220 (327)
T 2hpg_A 148 KPIRKPEDLN--GLRIRTPGAPAWQESI-RSLGAI---PVA-VNFGEIYTAVQTRAVDGAELTYANVYNGGLYEVLKYMS 220 (327)
T ss_dssp SCCSSGGGGT--TCEEECCSSHHHHHHH-HHHTSE---EEC-CCGGGHHHHHHTTSCSEEEECHHHHHHTTGGGTCCEEE
T ss_pred CCCCCHHHHC--CCEEEeCCCHHHHHHH-HHcCCE---eee-cCHHHHHHHHHcCCeeEEECCHHHHHHcChhhhccEEE
Confidence 6899999996 9999887544555566 456532 222 3678899999999999999765443111 112233333
Q ss_pred eCCccccCccEEEecCC
Q 002211 779 RGQEFTKSGWGFAFPRD 795 (953)
Q Consensus 779 ~~~~~~~~~~~~~~~k~ 795 (953)
..... .....+++.++
T Consensus 221 ~~~~~-~~~~~~~~n~~ 236 (327)
T 2hpg_A 221 ETGHF-LLINFEIVSAD 236 (327)
T ss_dssp EEEEE-EEEEEEEEEHH
T ss_pred ecCcc-hhceEEEEeHH
Confidence 22222 23456666665
No 231
>1vlj_A NADH-dependent butanol dehydrogenase; TM0820, structural G JCSG, protein structure initiative, PSI, joint center for S genomics; HET: NAP; 1.78A {Thermotoga maritima} SCOP: e.22.1.2
Probab=77.04 E-value=6.8 Score=42.91 Aligned_cols=88 Identities=11% Similarity=0.119 Sum_probs=63.8
Q ss_pred HHHHHHHHcCCcEEEEEEecCcccc-chHHHHHHHHHhcCcEEEEEEecCCCCCCChHHHHHHHHHHhcCCceEEEEEcc
Q 002211 172 AIAEMVSYFGWGEVIAIFNDDDQGR-NGVTALGDKLAEIRCKISYKSALPPDQSVTETDVRNELVKVRMMEARVIVVHGY 250 (953)
Q Consensus 172 ai~~~l~~~~w~~vaii~~d~~~g~-~~~~~l~~~l~~~g~~v~~~~~~~~~~~~~~~d~~~~l~~i~~~~~~vii~~~~ 250 (953)
.+.++++.+|.+++.+|+.+..... +..+.+.+.|++.|+++.......++ .+.+.+...+..+++.++|+||-.+.
T Consensus 33 ~l~~~l~~~g~~r~liVtd~~~~~~~g~~~~v~~~L~~~g~~~~~f~~v~~~--p~~~~v~~~~~~~~~~~~D~IIavGG 110 (407)
T 1vlj_A 33 KIGEEIKNAGIRKVLFLYGGGSIKKNGVYDQVVDSLKKHGIEWVEVSGVKPN--PVLSKVHEAVEVAKKEKVEAVLGVGG 110 (407)
T ss_dssp GHHHHHHHTTCCEEEEEECSSHHHHSSHHHHHHHHHHHTTCEEEEECCCCSS--CBHHHHHHHHHHHHHTTCSEEEEEES
T ss_pred HHHHHHHHcCCCeEEEEECchHHhhccHHHHHHHHHHHcCCeEEEecCccCC--CCHHHHHHHHHHHHhcCCCEEEEeCC
Confidence 3667788889899999986444333 46888999999889887533333333 45788888899999999999997765
Q ss_pred h--hhHHHHHHHH
Q 002211 251 S--RTGLMVFDVA 261 (953)
Q Consensus 251 ~--~~~~~~~~~a 261 (953)
+ -|+.+++...
T Consensus 111 GsviD~AK~iA~~ 123 (407)
T 1vlj_A 111 GSVVDSAKAVAAG 123 (407)
T ss_dssp HHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHH
Confidence 4 5666666554
No 232
>3ukm_A Potassium channel subfamily K member 1; membrane protein, eukaryotic, two-pore DO potassium channel, K2P channel, membrane; HET: UND; 3.40A {Homo sapiens}
Probab=76.46 E-value=1.7 Score=44.40 Aligned_cols=66 Identities=9% Similarity=0.124 Sum_probs=51.0
Q ss_pred cchhhHHHHHHHhhccccC--Ccccc-------hhHHHHHHHHHHHHHhhhhcccceeeeeeeccccCCCCChHH
Q 002211 642 QIVTVLWFSFSTMFFAHRE--NTVST-------LGRVVLIIWLFVVLIITSSYTASLTSILTVQQLSSPIKGIDT 707 (953)
Q Consensus 642 ~~~~~~~~~~~~l~~~~~~--~~~s~-------~~R~l~~~w~~~~lil~~~Yta~L~s~Lt~~~~~~~I~sl~d 707 (953)
.+.+++|+++.++...|.. .|.+. .+|++.++|.++++.+.....+.+++.+...++...+..-+|
T Consensus 201 s~~da~y~~~iTltTvGyGD~~p~t~~~~~~~~l~r~~~~~~il~Gl~~~~~~~~~i~~~~~~~~l~~~~~~~~~ 275 (280)
T 3ukm_A 201 NFLESFYFCFISLSTIGLGDYVPGEGYNQKFRELYKIGITCYLLLGLIAMLVVLETFCELHELKKFRKMFYVKKD 275 (280)
T ss_dssp CHHHHHHHHHHHHTTCCCCSCCSSCSSSCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHTSHHHHHHHHTTC----
T ss_pred chhhhhhheeeeeecccCCCCCCCCCcccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhh
Confidence 4789999999999988744 46555 369999999999999999999999988887776655444333
No 233
>3cfx_A UPF0100 protein MA_0280; ABC transporter, binding protein, molybdate, tungstate, LIGA unknown function, transport protein; 1.60A {Methanosarcina acetivorans}
Probab=75.71 E-value=44 Score=34.32 Aligned_cols=70 Identities=10% Similarity=0.031 Sum_probs=44.5
Q ss_pred HHHHHHHHHh-CCCcccEEEeeCCCCCCCCChHHHHHHHHc-Cc-eeEEEecEE--Ee-cCccceeeccccceecceEEE
Q 002211 515 IDVFLAAVRL-LPYAVPYKFIPYGDGHKNPTYSELINQITT-GV-FDAAVGDIA--IV-TNRTKAVDFTQPYIESGLVVV 588 (953)
Q Consensus 515 ~dll~~la~~-l~~~~~~~~~~~~~~~~n~~~~~~i~~l~~-g~-~Di~~~~~~--~t-~~r~~~vdft~p~~~~~~~~~ 588 (953)
-++++.+.++ -|.++++.+ +.-..++.++.+ |. +|+.+..-. +. ......++...||....++++
T Consensus 20 ~~l~~~F~~~~~gi~V~~~~---------~~s~~l~~~i~~~g~~~Dv~~~a~~~~~~~l~~~gl~~~~~~~~~~~l~i~ 90 (296)
T 3cfx_A 20 EELEAEFEAQHPGVDVQREA---------AGSAQSVRKITELGKKADVLASADYALIPSLMVPEYADWYAAFARNQMILA 90 (296)
T ss_dssp HHHHHHHHHHSTTCEEEEEE---------CCHHHHHHHHHTSCCCCSEEEESSTTHHHHHTTTTTCSCEEEEEECCEEEE
T ss_pred HHHHHHHHHHCCCceEEEEe---------CchHHHHHHHHhCCCCCcEEEECChhhHHHHHhCCCccceeeeEeeeEEEE
Confidence 3677788777 486665543 446788899988 75 898765321 11 111223345567888888888
Q ss_pred Eeccc
Q 002211 589 APVRK 593 (953)
Q Consensus 589 v~~~~ 593 (953)
+++..
T Consensus 91 ~~~~~ 95 (296)
T 3cfx_A 91 YTNES 95 (296)
T ss_dssp ECTTS
T ss_pred EeCCC
Confidence 87665
No 234
>1o2d_A Alcohol dehydrogenase, iron-containing; TM0920, structural genomics, JCSG, PSI, protein structure initiative; HET: MSE NAP TRS; 1.30A {Thermotoga maritima} SCOP: e.22.1.2 PDB: 1vhd_A*
Probab=75.02 E-value=11 Score=40.48 Aligned_cols=88 Identities=10% Similarity=0.098 Sum_probs=64.2
Q ss_pred HHHHHHHHHcCCcEEEEEEecCcccc-chHHHHHHHHHhcCcEEEEEEecCCCCCCChHHHHHHHHHHhcCCceEEEEEc
Q 002211 171 SAIAEMVSYFGWGEVIAIFNDDDQGR-NGVTALGDKLAEIRCKISYKSALPPDQSVTETDVRNELVKVRMMEARVIVVHG 249 (953)
Q Consensus 171 ~ai~~~l~~~~w~~vaii~~d~~~g~-~~~~~l~~~l~~~g~~v~~~~~~~~~~~~~~~d~~~~l~~i~~~~~~vii~~~ 249 (953)
..+.++++.+| +++.+|+....+.. +..+.+.+.|++.|+++.....+.++ .+.+++...++.+++.++|+||-.+
T Consensus 30 ~~l~~~l~~~g-~~~liVtd~~~~~~~g~~~~v~~~L~~~g~~~~~~~~~~~~--p~~~~v~~~~~~~~~~~~d~IIavG 106 (371)
T 1o2d_A 30 EKRGNIIDLLG-KRALVVTGKSSSKKNGSLDDLKKLLDETEISYEIFDEVEEN--PSFDNVMKAVERYRNDSFDFVVGLG 106 (371)
T ss_dssp HHHGGGGGGTC-SEEEEEEESSGGGTSSHHHHHHHHHHHTTCEEEEEEEECSS--CBHHHHHHHHHHHTTSCCSEEEEEE
T ss_pred HHHHHHHHHcC-CEEEEEECchHHhhccHHHHHHHHHHHcCCeEEEeCCccCC--CCHHHHHHHHHHHHhcCCCEEEEeC
Confidence 34566677778 99999987655443 36788999999999876544444444 5578889999999999999999776
Q ss_pred ch--hhHHHHHHHH
Q 002211 250 YS--RTGLMVFDVA 261 (953)
Q Consensus 250 ~~--~~~~~~~~~a 261 (953)
.+ -|+.+++...
T Consensus 107 GGsv~D~AK~iA~~ 120 (371)
T 1o2d_A 107 GGSPMDFAKAVAVL 120 (371)
T ss_dssp SHHHHHHHHHHHHH
T ss_pred ChHHHHHHHHHHHH
Confidence 54 5666666554
No 235
>2l82_A Designed protein OR32; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, de novo protein; NMR {Artificial gene}
Probab=74.86 E-value=24 Score=29.20 Aligned_cols=97 Identities=12% Similarity=0.159 Sum_probs=66.9
Q ss_pred EEEccCChHHHHHHHHHHHHHcCCcEEEEEEecCccccchHHHHHHHHHhcCcEEEEEEecCCCCCCChHHHHHHHHHHh
Q 002211 159 FVQTAPNDLYLMSAIAEMVSYFGWGEVIAIFNDDDQGRNGVTALGDKLAEIRCKISYKSALPPDQSVTETDVRNELVKVR 238 (953)
Q Consensus 159 ~fr~~p~d~~~~~ai~~~l~~~~w~~vaii~~d~~~g~~~~~~l~~~l~~~g~~v~~~~~~~~~~~~~~~d~~~~l~~i~ 238 (953)
+|-...+|....+-++.-++..| -+|.++|+|.+-- ....-.+.+++.|..|-.. .+..||..-+..|-
T Consensus 4 ifvvfssdpeilkeivreikrqg-vrvvllysdqdek--rrrerleefekqgvdvrtv--------edkedfrenireiw 72 (162)
T 2l82_A 4 IFVVFSSDPEILKEIVREIKRQG-VRVVLLYSDQDEK--RRRERLEEFEKQGVDVRTV--------EDKEDFRENIREIW 72 (162)
T ss_dssp EEEEEESCHHHHHHHHHHHHHTT-CEEEEEECCSCHH--HHHHHHHHHHTTTCEEEEC--------CSHHHHHHHHHHHH
T ss_pred EEEEecCCHHHHHHHHHHHHhCC-eEEEEEecCchHH--HHHHHHHHHHHcCCceeee--------ccHHHHHHHHHHHH
Confidence 45555677777778888888888 5788899876522 2233345678889887532 13688888888885
Q ss_pred c--CCceEEEEEcc--hhhHHHHHHHHHHcCC
Q 002211 239 M--MEARVIVVHGY--SRTGLMVFDVAQRLGM 266 (953)
Q Consensus 239 ~--~~~~vii~~~~--~~~~~~~~~~a~~~g~ 266 (953)
. .+-|++++... ..-...++.+|++.|.
T Consensus 73 erypqldvvvivttddkewikdfieeakergv 104 (162)
T 2l82_A 73 ERYPQLDVVVIVTTDDKEWIKDFIEEAKERGV 104 (162)
T ss_dssp HHCTTCCEEEEEECCCHHHHHHHHHHHHHTTC
T ss_pred HhCCCCcEEEEEecCcHHHHHHHHHHHHhcCc
Confidence 4 45577666544 3567889999999885
No 236
>4edp_A ABC transporter, substrate-binding protein; clostridium PERF ATCC 13124, center for structural genomics of infectious DI csgid; 1.85A {Clostridium perfringens}
Probab=74.75 E-value=36 Score=35.65 Aligned_cols=83 Identities=7% Similarity=-0.125 Sum_probs=54.4
Q ss_pred eCCCHHHHHHHHHcCCcEEEEccchhHHHHHhcCcceEEeCC--ccccCccEEEecCCCcchHHHHHHHHhhhccccHHH
Q 002211 740 ALGSPEEYAIALENRTVAAVVDERPYIDLFLSDHCQFSVRGQ--EFTKSGWGFAFPRDSPLAIDMSTAILTLSENGELQR 817 (953)
Q Consensus 740 ~~~~~~~~~~~l~~g~~~a~~~~~~~~~~~~~~~~~l~~~~~--~~~~~~~~~~~~k~spl~~~~n~~i~~l~e~G~~~~ 817 (953)
.+.+..+..+.+.+|++++.+.....+..+.....++.++-+ -......+++++++++-.+.--+.|..+........
T Consensus 215 ~~~~~~~~~~~f~~G~~a~~~~~~~~~~~~~~~~~~~~~~~P~~g~~~~~~~~~i~~~s~~~~~A~~fi~~l~s~e~q~~ 294 (351)
T 4edp_A 215 TYSKSSDLANMFSNGEIVAAVASDFAFGTISKAKPEVINVIPESGTYLNFNTININKNSKNKDLAYEFINYALSKEVQEK 294 (351)
T ss_dssp EECCHHHHHHHHHTTSCSEEEEEHHHHHHHHHHCTTCEEECCTTCCBEEEEEEEEBTTCSCHHHHHHHHHHHTSHHHHHH
T ss_pred ccCChHHHHHHHHcCCEEEEecCcHHHHHHHhcCCCeeeeCCCCCcccceeeEEEECCCCCHHHHHHHHHHhcCHHHHHH
Confidence 456788899999999999888766655555554444443321 111234678999999977777777777766554444
Q ss_pred HHHHh
Q 002211 818 IHDKW 822 (953)
Q Consensus 818 ~~~~w 822 (953)
+.+..
T Consensus 295 ~~~~~ 299 (351)
T 4edp_A 295 TAKAL 299 (351)
T ss_dssp HHHHH
T ss_pred HHHhc
Confidence 54443
No 237
>2de3_A Dibenzothiophene desulfurization enzyme B; alpha-beta, hydrolase; HET: OBP; 1.60A {Rhodococcus SP} PDB: 2de4_A* 2de2_A
Probab=74.65 E-value=11 Score=40.66 Aligned_cols=120 Identities=20% Similarity=0.188 Sum_probs=69.9
Q ss_pred CCCCChHHhhhCCCeEEEEe-------Cch-----------------------HHHHHHHhhCCCc--cceEeCCCHH--
Q 002211 700 SPIKGIDTLMTSNDRVGYQV-------GSF-----------------------AENYLIEELSIPK--SRLVALGSPE-- 745 (953)
Q Consensus 700 ~~I~sl~dL~~~~~~ig~~~-------~s~-----------------------~~~~l~~~~~~~~--~~~~~~~~~~-- 745 (953)
.+|++++||. |++||+.. |+. ...++ ++.+... .+++.++..+
T Consensus 109 s~I~s~~DLk--Gk~Igv~~~~~~~~~gs~~~~~~~~~~~~~~~~~gs~~~~~~~~~L-~~~Gl~~~dv~~v~~~~~~~~ 185 (365)
T 2de3_A 109 SPITAAADLA--GRRIGVSASAIRILRGQLGDYLELDPWRQTLVALGSWEARALLHTL-EHGELGVDDVELVPISSPGVD 185 (365)
T ss_dssp CSCCSGGGGT--TCEEEECHHHHHHHHTCCTTGGGSCHHHHHHHHTTHHHHHHHHHHH-HHTTCCGGGSEEEECCCTTTC
T ss_pred CCCCCHHHhC--CCeEEeecccccccCCCcccccccchhhhhhhccchhhHHHHHHHH-HHcCCCHHHeEEEECCCcccc
Confidence 5799999997 99999986 441 33445 3445543 3455555431
Q ss_pred -----------------------HHHHHHHcCCcEEEEccchhHHHHHhcCcceEEeCCcc----ccCccEEEecC----
Q 002211 746 -----------------------EYAIALENRTVAAVVDERPYIDLFLSDHCQFSVRGQEF----TKSGWGFAFPR---- 794 (953)
Q Consensus 746 -----------------------~~~~~l~~g~~~a~~~~~~~~~~~~~~~~~l~~~~~~~----~~~~~~~~~~k---- 794 (953)
+...+|.+|++||++...++...... .+.+++...- ......+++++
T Consensus 186 ~~~~~~~~~~~~~~~~~~~~~~~~~~~aL~~G~vDA~~~~~p~~~~~~~--~g~~~l~~~~~~~~~~~~~~l~~~~~~~~ 263 (365)
T 2de3_A 186 VPAEQLEESATVKGADLFPDVARGQAAVLASGDVDALYSWLPWAGELQA--TGARPVVDLGLDERNAYASVWTVSSGLVR 263 (365)
T ss_dssp CCHHHHHHSSBSSHHHHSTTHHHHHHHHHHSSSCSEEEEEHHHHHHHHH--TTEEESSCGGGSGGGCEEEEEEEEHHHHH
T ss_pred ccccccccccccccccccccchhhHHHHHhCCCcCEEEEcchhHHHHHh--CCCEEEEeCcccCCCCceEEEEEcHHHHH
Confidence 26889999999999988777655433 2355543321 11123555653
Q ss_pred CCc-chHH----HHHHHHhhhcc-ccHHHHHHHhcc
Q 002211 795 DSP-LAID----MSTAILTLSEN-GELQRIHDKWLR 824 (953)
Q Consensus 795 ~sp-l~~~----~n~~i~~l~e~-G~~~~~~~~w~~ 824 (953)
..| +... +.++...+.++ ....++..+++.
T Consensus 264 ~~p~~v~~~~~a~~~a~~~~~~~p~~~~~i~~~~~~ 299 (365)
T 2de3_A 264 QRPGLVQRLVDAAVDAGLWARDHSDAVTSLHAANLG 299 (365)
T ss_dssp HCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHT
T ss_pred HCHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHhC
Confidence 345 4444 44555555554 234455555543
No 238
>2gzm_A Glutamate racemase; enzyme, isomerase; HET: DGL; 1.99A {Bacillus anthracis}
Probab=74.44 E-value=20 Score=36.45 Aligned_cols=118 Identities=14% Similarity=0.114 Sum_probs=67.4
Q ss_pred HHHHHHHhcCcEEEEccCChhhHHHHHHhhhhCCCcEEEeecCCCCCCCCCCCcEEEccCChHHHHHHHHHH-HHHcCCc
Q 002211 105 MGALQFMETDTLAIVGPQSAVMAHVLSHLANELQVPLLSFTALDPTLSPLQYPFFVQTAPNDLYLMSAIAEM-VSYFGWG 183 (953)
Q Consensus 105 ~~a~~li~~~v~aiiGp~~S~~a~av~~v~~~~~vP~Is~~at~~~ls~~~~p~~fr~~p~d~~~~~ai~~~-l~~~~w~ 183 (953)
+.+..|.+.++.+|+-+..+..+.++..+-+..++|+|.. ..+.++. ++..+-+
T Consensus 56 ~~~~~L~~~g~d~iviaCNTas~~~l~~lr~~~~iPvigi-------------------------~ep~~~~A~~~~~~~ 110 (267)
T 2gzm_A 56 EMTEHLLDLNIKMLVIACNTATAVVLEEMQKQLPIPVVGV-------------------------IHPGSRTALKVTNTY 110 (267)
T ss_dssp HHHHHHHTTTCSEEEECCHHHHHHHHHHHHHHCSSCEEES-------------------------HHHHHHHHHHHCSSC
T ss_pred HHHHHHHHCCCCEEEEeCchhhHHHHHHHHHhCCCCEEee-------------------------cHHHHHHHHHccCCC
Confidence 3444555569999999887777667778888889999962 1222222 2334668
Q ss_pred EEEEEEecCccccchHHHHHHHHHhc--CcEEEEEEecC-------CCCCC---ChHHHHHHHHHHhcCCceEEEEEcch
Q 002211 184 EVIAIFNDDDQGRNGVTALGDKLAEI--RCKISYKSALP-------PDQSV---TETDVRNELVKVRMMEARVIVVHGYS 251 (953)
Q Consensus 184 ~vaii~~d~~~g~~~~~~l~~~l~~~--g~~v~~~~~~~-------~~~~~---~~~d~~~~l~~i~~~~~~vii~~~~~ 251 (953)
+|+++..... -....+++.+++. |++|.... -+ .+... ....+...+..+.+.++|+||+.|..
T Consensus 111 rIgVlaT~~T---~~~~~y~~~l~~~~~g~~v~~~~-~~~~v~~ie~g~~~~~~~~~~l~~~~~~l~~~~~d~iVLGCTh 186 (267)
T 2gzm_A 111 HVGIIGTIGT---VKSGAYEEALKSINNRVMVESLA-CPPFVELVESGNFESEMAYEVVRETLQPLKNTDIDTLILGCTH 186 (267)
T ss_dssp EEEEEECHHH---HHHTHHHHHHHHHCTTCEEEEEE-CTTHHHHHHTTCSSSHHHHHHHHHHHHHHHHSCCSEEEECSTT
T ss_pred EEEEEEChHH---hccHHHHHHHHHhCCCCEEeccC-CHHHHHHHhCCCCCCHHHHHHHHHHHHHHHhcCCCEEEEcccC
Confidence 9999875322 1122356666665 66665321 11 01000 02234445555555677777776543
No 239
>1mkz_A Molybdenum cofactor biosynthesis protein B; MAD, WEAK anomalous signal, molybdopterin synthesis, structural genomics, PSI; HET: MSE; 1.60A {Escherichia coli} SCOP: c.57.1.1 PDB: 1r2k_B
Probab=72.92 E-value=14 Score=34.82 Aligned_cols=64 Identities=13% Similarity=0.197 Sum_probs=50.9
Q ss_pred cEEEEEEecCccccc---hHHHHHHHHHhcCcEEEEEEecCCCCCCChHHHHHHHHHHhcC-CceEEEEEcc
Q 002211 183 GEVIAIFNDDDQGRN---GVTALGDKLAEIRCKISYKSALPPDQSVTETDVRNELVKVRMM-EARVIVVHGY 250 (953)
Q Consensus 183 ~~vaii~~d~~~g~~---~~~~l~~~l~~~g~~v~~~~~~~~~~~~~~~d~~~~l~~i~~~-~~~vii~~~~ 250 (953)
-+|++|...|+-|+- ....+.+.+++.|+++.....++.+ .+++...+.+..+. ++|+||..+.
T Consensus 11 ~~v~Ii~tGdE~g~i~D~n~~~l~~~L~~~G~~v~~~~iv~Dd----~~~i~~~l~~a~~~~~~DlVittGG 78 (172)
T 1mkz_A 11 TRIAILTVSNRRGEEDDTSGHYLRDSAQEAGHHVVDKAIVKEN----RYAIRAQVSAWIASDDVQVVLITGG 78 (172)
T ss_dssp CEEEEEEECSSCCGGGCHHHHHHHHHHHHTTCEEEEEEEECSC----HHHHHHHHHHHHHSSSCCEEEEESC
T ss_pred CEEEEEEEeCCCCcccCccHHHHHHHHHHCCCeEeEEEEeCCC----HHHHHHHHHHHHhcCCCCEEEeCCC
Confidence 479999887776642 3577889999999999888778766 78888888888765 6999998754
No 240
>3cfz_A UPF0100 protein MJ1186; ABC transporter, binding protein, molybdate, tungstate, ligand, unknown function, transport protein; 1.70A {Methanocaldococcus jannaschii}
Probab=72.86 E-value=37 Score=34.78 Aligned_cols=71 Identities=10% Similarity=-0.028 Sum_probs=44.6
Q ss_pred eHHHHHHHHHh-CCCcccEEEeeCCCCCCCCChHHHHHHHHc-Cc-eeEEEecEEEec---CccceeeccccceecceEE
Q 002211 514 CIDVFLAAVRL-LPYAVPYKFIPYGDGHKNPTYSELINQITT-GV-FDAAVGDIAIVT---NRTKAVDFTQPYIESGLVV 587 (953)
Q Consensus 514 ~~dll~~la~~-l~~~~~~~~~~~~~~~~n~~~~~~i~~l~~-g~-~Di~~~~~~~t~---~r~~~vdft~p~~~~~~~~ 587 (953)
.-++++.+.++ -|.++++.+ +.-..++.++.+ |. +|+.++.-.... .....++...||....+++
T Consensus 19 ~~~l~~~F~~~~~gi~V~~~~---------~~s~~l~~~i~~~g~~~Dv~~~a~~~~~~~l~~~gl~~~~~~~~~~~lvi 89 (292)
T 3cfz_A 19 FEEYEKMFEKEHPNVDVEREP---------AGSVACVRKIIDLGKKADILASADYSLIPQMMMPKYADWYVMFARNEIVL 89 (292)
T ss_dssp HHHHHHHHHHHCTTEEEEEEE---------ECHHHHHHHHHTSCCCCSEEEESSTTHHHHHTTTTTCSCCEEEEECCEEE
T ss_pred HHHHHHHHHHHCCCceEEEEe---------CCHHHHHHHHHhcCCCCcEEEECChHHHHHHHhCCCccceeeeEeccEEE
Confidence 34677777777 486655543 346788999988 75 898765311101 1122334566788888888
Q ss_pred EEeccc
Q 002211 588 VAPVRK 593 (953)
Q Consensus 588 ~v~~~~ 593 (953)
++++..
T Consensus 90 ~~~~~~ 95 (292)
T 3cfz_A 90 AYTDKS 95 (292)
T ss_dssp EECTTS
T ss_pred EEcCCC
Confidence 887664
No 241
>2dwu_A Glutamate racemase; isomerase; HET: DGL; 1.60A {Bacillus anthracis}
Probab=72.81 E-value=23 Score=36.27 Aligned_cols=119 Identities=15% Similarity=0.143 Sum_probs=67.9
Q ss_pred HHHHHHHHhcCcEEEEccCChhhHHHHHHhhhhCCCcEEEeecCCCCCCCCCCCcEEEccCChHHHHHHHHH-HHHHcCC
Q 002211 104 IMGALQFMETDTLAIVGPQSAVMAHVLSHLANELQVPLLSFTALDPTLSPLQYPFFVQTAPNDLYLMSAIAE-MVSYFGW 182 (953)
Q Consensus 104 ~~~a~~li~~~v~aiiGp~~S~~a~av~~v~~~~~vP~Is~~at~~~ls~~~~p~~fr~~p~d~~~~~ai~~-~l~~~~w 182 (953)
.+.+..|.++++.+|+-+..+..+.++..+-+..++|+|.. ..+.++ .++..+-
T Consensus 59 ~~~~~~L~~~g~d~IViACNTas~~~l~~lr~~~~iPVigi-------------------------iep~~~~A~~~~~~ 113 (276)
T 2dwu_A 59 FEMVEFLKQFPLKALVVACNTAAAATLAALQEALSIPVIGV-------------------------IHPGARAAIKVTKK 113 (276)
T ss_dssp HHHHHHHTTSCEEEEEECCHHHHHHHHHHHHHHCSSCEEES-------------------------HHHHHHHHHHHCSS
T ss_pred HHHHHHHHHCCCCEEEEeCCcHHHHHHHHHHHHCCCCEEec-------------------------cHHHHHHHHHhcCC
Confidence 34445555669999999877777667777888889999852 011221 2233466
Q ss_pred cEEEEEEecCccccchHHHHHHHHHhc--CcEEEEEEecCC-------CCC---CChHHHHHHHHHHhcCCceEEEEEcc
Q 002211 183 GEVIAIFNDDDQGRNGVTALGDKLAEI--RCKISYKSALPP-------DQS---VTETDVRNELVKVRMMEARVIVVHGY 250 (953)
Q Consensus 183 ~~vaii~~d~~~g~~~~~~l~~~l~~~--g~~v~~~~~~~~-------~~~---~~~~d~~~~l~~i~~~~~~vii~~~~ 250 (953)
++|+++......-.. .+.+.+++. +.+|... .-+. +.. .....+...+..+++.++|+||+.|.
T Consensus 114 ~rIgVlaT~~T~~s~---~y~~~i~~~~~~~~v~~~-~~~~~v~~ve~g~~~~~~~~~~l~~~l~~l~~~~~D~IVLGCT 189 (276)
T 2dwu_A 114 GKIGVIGTVGTIQSN---MYEKALHELDTYLKVHSH-ACPTLATVVENRLEDTAYVTQQVKQALLPLTKEDIDTLILGCT 189 (276)
T ss_dssp SEEEEEECHHHHHTT---HHHHHHHHHCTTCEEEEE-ECTTHHHHHHHSTTCHHHHHHHHHHHHHHHHTSCCSEEEECST
T ss_pred CeEEEEeChhhhhhH---HHHHHHHHhCCCCEEEee-eCHHHHHHHHcCCcCCHHHHHHHHHHHHHHHhcCCCEEEECCC
Confidence 899999855332222 234444443 5555432 2221 100 01123555666676678888888665
Q ss_pred h
Q 002211 251 S 251 (953)
Q Consensus 251 ~ 251 (953)
.
T Consensus 190 h 190 (276)
T 2dwu_A 190 H 190 (276)
T ss_dssp T
T ss_pred C
Confidence 4
No 242
>2rin_A Putative glycine betaine-binding ABC transporter protein; type II binding protein, aromatic BOX, acetylcholine, protein binding; HET: ACH; 1.80A {Rhizobium meliloti} PDB: 2rej_A 2rf1_A 2reg_A* 3hcq_A
Probab=72.78 E-value=8.4 Score=40.11 Aligned_cols=66 Identities=14% Similarity=0.116 Sum_probs=40.6
Q ss_pred CCCChHHhhhC-----CCeEEEEeCchHHH----HHH-HhhCCCccceEeCCCHH----HHHHHHHcCCcEEEEccchhH
Q 002211 701 PIKGIDTLMTS-----NDRVGYQVGSFAEN----YLI-EELSIPKSRLVALGSPE----EYAIALENRTVAAVVDERPYI 766 (953)
Q Consensus 701 ~I~sl~dL~~~-----~~~ig~~~~s~~~~----~l~-~~~~~~~~~~~~~~~~~----~~~~~l~~g~~~a~~~~~~~~ 766 (953)
.|+|++||.+. |+.+|+..|+.... .|+ +.++....+++. .+.. +...++.+|+++++..-.+..
T Consensus 104 ~I~si~DLk~~~~~~~gk~~g~~~G~~~~~~~~~~l~~~~yGL~d~~~v~-~~~~~~~a~~~~A~~~g~~~v~~~w~p~~ 182 (298)
T 2rin_A 104 GIKDFKDIAAHKDELDGKIYGIEPGNDGNRLIIDMVEKGTFDLKGFEVVE-SSEQGMLAQVARAEKSGDPIVFLGWEPHP 182 (298)
T ss_dssp TCCBGGGSGGGHHHHTSEEECCSTTCHHHHHHHHHHHHTGGGCTTCEEEC-CCHHHHHHHHHHHHHTTCCCEEEEEESST
T ss_pred CCCCHHHHHHHHHHcCCeEECCCCChHHHHHHHHHhhhhcCCCCCceecc-CCHHHHHHHHHHHHHCCCCEEEEEeccCc
Confidence 78899999632 66788877775433 243 255653233333 2332 235677789999998877764
Q ss_pred H
Q 002211 767 D 767 (953)
Q Consensus 767 ~ 767 (953)
.
T Consensus 183 ~ 183 (298)
T 2rin_A 183 M 183 (298)
T ss_dssp H
T ss_pred h
Confidence 3
No 243
>3uhj_A Probable glycerol dehydrogenase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 2.34A {Sinorhizobium meliloti}
Probab=72.60 E-value=5.1 Score=43.46 Aligned_cols=82 Identities=7% Similarity=0.105 Sum_probs=55.6
Q ss_pred HHHHHHHHcCCcEEEEEEecCccccchHHHHHHHHHhcCcEEEEEEecCCCCCCChHHHHHHHHHHhcCCceEEEEEcch
Q 002211 172 AIAEMVSYFGWGEVIAIFNDDDQGRNGVTALGDKLAEIRCKISYKSALPPDQSVTETDVRNELVKVRMMEARVIVVHGYS 251 (953)
Q Consensus 172 ai~~~l~~~~w~~vaii~~d~~~g~~~~~~l~~~l~~~g~~v~~~~~~~~~~~~~~~d~~~~l~~i~~~~~~vii~~~~~ 251 (953)
.+.++++.+| +++.+|+....+.. ..+.+.+.|++ |+.+.+ ..+... .+.+++...++.+++.++|+||-.+.+
T Consensus 43 ~l~~~l~~~g-~r~liVtd~~~~~~-~~~~v~~~L~~-g~~~~~-~~~~~~--p~~~~v~~~~~~~~~~~~d~IIavGGG 116 (387)
T 3uhj_A 43 KLAAYLAPLG-KRALVLIDRVLFDA-LSERIGKSCGD-SLDIRF-ERFGGE--CCTSEIERVRKVAIEHGSDILVGVGGG 116 (387)
T ss_dssp TTHHHHGGGC-SEEEEEECTTTHHH-HHHHC-------CCEEEE-EECCSS--CSHHHHHHHHHHHHHHTCSEEEEESSH
T ss_pred HHHHHHHHcC-CEEEEEECchHHHH-HHHHHHHHHHc-CCCeEE-EEcCCC--CCHHHHHHHHHHHhhcCCCEEEEeCCc
Confidence 3567788889 99999986665543 67788888988 988743 445555 557888888888888999999988766
Q ss_pred --hhHHHHHH
Q 002211 252 --RTGLMVFD 259 (953)
Q Consensus 252 --~~~~~~~~ 259 (953)
-|+.+++.
T Consensus 117 s~~D~AK~iA 126 (387)
T 3uhj_A 117 KTADTAKIVA 126 (387)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 45555554
No 244
>2q5c_A NTRC family transcriptional regulator; structural genomics, protein structure initiative; HET: SO4 GOL; 1.49A {Clostridium acetobutylicum atcc 824}
Probab=71.26 E-value=49 Score=31.73 Aligned_cols=158 Identities=16% Similarity=0.123 Sum_probs=95.0
Q ss_pred EEEeEEEecCCCchhHHHHHHHHHHHHHhcCCCCCCCcEEEEEEecCCCChHHHHHHHHHHHhcCcEEEEccCChhhHHH
Q 002211 50 LNVGAIFSFGTVNGQVSRIAMKAAQDDINSDPRVLGGRKLSITMHDAKFNGFLSIMGALQFMETDTLAIVGPQSAVMAHV 129 (953)
Q Consensus 50 i~IG~l~~~~~~~g~~~~~a~~lAve~iN~~g~il~g~~l~l~~~D~~~~~~~a~~~a~~li~~~v~aiiGp~~S~~a~a 129 (953)
.+|.++.|.. ....-++-...+.| ..+.+.. ++-..++..++++ .+++.+||.-.. ++.
T Consensus 5 ~~I~~iapy~-----~l~~~~~~i~~e~~--------~~i~i~~----~~l~~~v~~a~~~-~~~~dVIISRGg--ta~- 63 (196)
T 2q5c_A 5 LKIALISQNE-----NLLNLFPKLALEKN--------FIPITKT----ASLTRASKIAFGL-QDEVDAIISRGA--TSD- 63 (196)
T ss_dssp CEEEEEESCH-----HHHHHHHHHHHHHT--------CEEEEEE----CCHHHHHHHHHHH-TTTCSEEEEEHH--HHH-
T ss_pred CcEEEEEccH-----HHHHHHHHHHhhhC--------CceEEEE----CCHHHHHHHHHHh-cCCCeEEEECCh--HHH-
Confidence 5778887752 22233333334432 2444332 3467789999999 889999996322 222
Q ss_pred HHHhhhhCCCcEEEeecCCCCCCCCCCCcEEEccCChHHHHHHHHHHHHHcCCcEEEEEEecCccccchHHHHHHHHHhc
Q 002211 130 LSHLANELQVPLLSFTALDPTLSPLQYPFFVQTAPNDLYLMSAIAEMVSYFGWGEVIAIFNDDDQGRNGVTALGDKLAEI 209 (953)
Q Consensus 130 v~~v~~~~~vP~Is~~at~~~ls~~~~p~~fr~~p~d~~~~~ai~~~l~~~~w~~vaii~~d~~~g~~~~~~l~~~l~~~ 209 (953)
-+-+..++|+|... .+.....+++...- .++ ++++++...+.. ...+.+.+.+
T Consensus 64 --~lr~~~~iPVV~I~------------------~s~~Dil~al~~a~-~~~-~kIavvg~~~~~--~~~~~~~~ll--- 116 (196)
T 2q5c_A 64 --YIKKSVSIPSISIK------------------VTRFDTMRAVYNAK-RFG-NELALIAYKHSI--VDKHEIEAML--- 116 (196)
T ss_dssp --HHHTTCSSCEEEEC------------------CCHHHHHHHHHHHG-GGC-SEEEEEEESSCS--SCHHHHHHHH---
T ss_pred --HHHHhCCCCEEEEc------------------CCHhHHHHHHHHHH-hhC-CcEEEEeCcchh--hHHHHHHHHh---
Confidence 23345689999742 22333445555443 344 589998754432 2345555555
Q ss_pred CcEEEEEEecCCCCCCChHHHHHHHHHHhcCCceEEEEEcchhhHHHHHHHHHHcCCC
Q 002211 210 RCKISYKSALPPDQSVTETDVRNELVKVRMMEARVIVVHGYSRTGLMVFDVAQRLGMM 267 (953)
Q Consensus 210 g~~v~~~~~~~~~~~~~~~d~~~~l~~i~~~~~~vii~~~~~~~~~~~~~~a~~~g~~ 267 (953)
|.++.... +. +.++....+.++++.+.++||-.+. ..+.|++.|+.
T Consensus 117 ~~~i~~~~-~~-----~~~e~~~~i~~l~~~G~~vvVG~~~------~~~~A~~~Gl~ 162 (196)
T 2q5c_A 117 GVKIKEFL-FS-----SEDEITTLISKVKTENIKIVVSGKT------VTDEAIKQGLY 162 (196)
T ss_dssp TCEEEEEE-EC-----SGGGHHHHHHHHHHTTCCEEEECHH------HHHHHHHTTCE
T ss_pred CCceEEEE-eC-----CHHHHHHHHHHHHHCCCeEEECCHH------HHHHHHHcCCc
Confidence 55555432 22 2678899999999999999886543 35677888874
No 245
>2oho_A Glutamate racemase; isomerase; 2.25A {Streptococcus pyogenes m1 gas} PDB: 2ohg_A 2ohv_A*
Probab=71.24 E-value=13 Score=38.01 Aligned_cols=82 Identities=13% Similarity=0.071 Sum_probs=51.4
Q ss_pred HHHHHHhcCcEEEEccCChhhHHHHHHhhhhCCCcEEEeecCCCCCCCCCCCcEEEccCChHHHHHHHHH-HHHHcCCcE
Q 002211 106 GALQFMETDTLAIVGPQSAVMAHVLSHLANELQVPLLSFTALDPTLSPLQYPFFVQTAPNDLYLMSAIAE-MVSYFGWGE 184 (953)
Q Consensus 106 ~a~~li~~~v~aiiGp~~S~~a~av~~v~~~~~vP~Is~~at~~~ls~~~~p~~fr~~p~d~~~~~ai~~-~l~~~~w~~ 184 (953)
.+..|.+.++.+|+-+..+..+.++..+-+..++|+|.. .++.++ .++..+-++
T Consensus 66 ~~~~L~~~g~d~iviaCNTas~~~l~~lr~~~~iPvigi-------------------------~epa~~~A~~~~~~~r 120 (273)
T 2oho_A 66 LVNFLLTQNVKMIVFACNTATAVAWEEVKAALDIPVLGV-------------------------VLPGASAAIKSTTKGQ 120 (273)
T ss_dssp HHHHHHTTTCSEEEECCHHHHHHHHHHHHHHCSSCEEES-------------------------HHHHHHHHHHHCSSSE
T ss_pred HHHHHHHCCCCEEEEeCchHhHHHHHHHHHhCCCCEEec-------------------------cHHHHHHHHHhcCCCe
Confidence 344455559999998887777666777888889999962 111122 233456789
Q ss_pred EEEEEecCccccchHHHHHHHHHhc--CcEEEE
Q 002211 185 VIAIFNDDDQGRNGVTALGDKLAEI--RCKISY 215 (953)
Q Consensus 185 vaii~~d~~~g~~~~~~l~~~l~~~--g~~v~~ 215 (953)
|+++.....- ....+++.+++. |++|..
T Consensus 121 IgVlaT~~T~---~~~~y~~~l~~~~~g~~v~~ 150 (273)
T 2oho_A 121 VGVIGTPMTV---ASDIYRKKIQLLAPSIQVRS 150 (273)
T ss_dssp EEEEECHHHH---HHTHHHHHHHHHCTTSEEEE
T ss_pred EEEEECchhh---cchHHHHHHHHhCCCCEEEe
Confidence 9999855321 123345566665 777653
No 246
>3tmg_A Glycine betaine, L-proline ABC transporter, glycine/betaine/L-proline-binding protein...; ssgcid, structural genomics; 1.90A {Borrelia burgdorferi}
Probab=71.03 E-value=22 Score=36.50 Aligned_cols=97 Identities=13% Similarity=0.121 Sum_probs=53.9
Q ss_pred eeeccccCCCCChHHhhhCC-----CeEEEEeCchHH----HHHHHhhCCC-ccceEeCCCHH----HHHHHHHcCCcEE
Q 002211 693 LTVQQLSSPIKGIDTLMTSN-----DRVGYQVGSFAE----NYLIEELSIP-KSRLVALGSPE----EYAIALENRTVAA 758 (953)
Q Consensus 693 Lt~~~~~~~I~sl~dL~~~~-----~~ig~~~~s~~~----~~l~~~~~~~-~~~~~~~~~~~----~~~~~l~~g~~~a 758 (953)
|.+++.. .|+|++||.+.. +.+|+..|.... ..+ +.+++. ..+++. .+.. +...++.+|+.++
T Consensus 102 l~V~~~~-~i~sisDL~~~~~~f~~~~~g~~~G~~~~~~~~~~l-~~yGL~~~~~~v~-~s~~~m~~~l~~A~~~g~~~v 178 (280)
T 3tmg_A 102 FVVPSYV-PISSISELKGKGDKFKNKMIGIDAGAGTQIVTEQAL-NYYGLSKEYELVP-SSESVMLASLDSSIKRNEWIL 178 (280)
T ss_dssp EEEETTS-CCCBGGGGTTCGGGGTTEEECCSTTCHHHHHHHHHH-HHTTCTTTSEEEC-CCHHHHHHHHHHHHHTTCCCC
T ss_pred EEECCCC-CCCCHHHHHhhHHHcCCeEEecCCCchhHHHHHHHH-HhcCCCCceEEEe-CCHHHHHHHHHHHHHCCCCEE
Confidence 3344433 799999997432 236666665432 333 456763 233332 2333 2347788899988
Q ss_pred EEccchhHHHHHhcCcceEEeCCc---c-ccCccEEEecCC
Q 002211 759 VVDERPYIDLFLSDHCQFSVRGQE---F-TKSGWGFAFPRD 795 (953)
Q Consensus 759 ~~~~~~~~~~~~~~~~~l~~~~~~---~-~~~~~~~~~~k~ 795 (953)
+..-.+....-. .+++++..+ + .......+++++
T Consensus 179 ~~~w~p~~~~~~---~~l~~LeD~k~~~~p~~~~~~vvr~~ 216 (280)
T 3tmg_A 179 VPLWKPHWAFSR---YDIKFLDDPDLIMGGIESVHTLVRLG 216 (280)
T ss_dssp EEEEESCTHHHH---SCEEECBCTTCTTCSSEEEEEEEETT
T ss_pred EEEecCchhhhc---CCeEEecCccccCCCcceEEEEeccc
Confidence 887777655432 256666432 2 223345566665
No 247
>1r9l_A Glycine betaine-binding periplasmic protein; periplasmic binding protein, cation-PI interactions, tryptophan BOX, protein binding; 1.59A {Escherichia coli} SCOP: c.94.1.1 PDB: 1r9q_A*
Probab=70.63 E-value=15 Score=38.45 Aligned_cols=67 Identities=13% Similarity=0.070 Sum_probs=41.4
Q ss_pred CCCChHHhh--h---------C--CCeEEEEeCchHHHHHH---HhhCCCccceEeCC-CH----HHHHHHHHcCCcEEE
Q 002211 701 PIKGIDTLM--T---------S--NDRVGYQVGSFAENYLI---EELSIPKSRLVALG-SP----EEYAIALENRTVAAV 759 (953)
Q Consensus 701 ~I~sl~dL~--~---------~--~~~ig~~~~s~~~~~l~---~~~~~~~~~~~~~~-~~----~~~~~~l~~g~~~a~ 759 (953)
.|+|++||. + . ++.+++..|......+. +.+++.. .+.... +. .+...++.+|+.+++
T Consensus 107 ~i~si~DL~~~~~~~~f~~~~~gkg~~~~~~~G~~~~~~~~~~l~~yGL~~-~~~~~~~s~~~~~~~~~~A~~~g~~~v~ 185 (309)
T 1r9l_A 107 KITNIAQLKDPKIAKLFDTNGDGKADLTGCNPGWGCEGAINHQLAAYELTN-TVTHNQGNYAAMMADTISRYKEGKPVFY 185 (309)
T ss_dssp TCCBGGGGGSHHHHGGGCSSSSSSEEEECCCTTSHHHHHHHHHHHHTTCTT-TEEEECSCHHHHHHHHHHHHHTTCCCEE
T ss_pred CCCCHHHHcCchHHHHcCCCCCCCceEEecCCCcchhHHHHHHHHhcCCCC-ceEEcCCCHHHHHHHHHHHHHCCCCEEE
Confidence 788999996 1 1 23467777775544222 3566553 343333 32 256678889999999
Q ss_pred EccchhHHH
Q 002211 760 VDERPYIDL 768 (953)
Q Consensus 760 ~~~~~~~~~ 768 (953)
..-.+....
T Consensus 186 ~~w~P~~~~ 194 (309)
T 1r9l_A 186 YTWTPYWVS 194 (309)
T ss_dssp EEEESSSHH
T ss_pred EeecCchHh
Confidence 887776544
No 248
>1h3d_A ATP-phosphoribosyltransferase; hisitidine biosynthesis, glycosyltransferase; HET: AMP TLA; 2.7A {Escherichia coli} SCOP: c.94.1.1 d.58.5.3 PDB: 1q1k_A*
Probab=70.13 E-value=23 Score=36.34 Aligned_cols=101 Identities=12% Similarity=0.043 Sum_probs=62.9
Q ss_pred CCCChHHhhhCCCeEEEEeCchHHHHHHHhhCCCccceEeCCCHHHHHHHHHcCCcEEEEccchhHHHHHhcCcceEEeC
Q 002211 701 PIKGIDTLMTSNDRVGYQVGSFAENYLIEELSIPKSRLVALGSPEEYAIALENRTVAAVVDERPYIDLFLSDHCQFSVRG 780 (953)
Q Consensus 701 ~I~sl~dL~~~~~~ig~~~~s~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~g~~~a~~~~~~~~~~~~~~~~~l~~~~ 780 (953)
.+.++++|. +++|+...-...++||. +.++. ..++.....-|.. ..-|-.|++++-......+.++ +|.+++
T Consensus 115 ~~~~~~~l~--g~RIATkyp~l~~~yf~-~~gi~-~~ii~l~GsvE~a--P~~GlADaIvDivsTG~TLraN--gL~~ie 186 (299)
T 1h3d_A 115 AWDGPLSLN--GKRIATSYPHLLKRYLD-QKGIS-FKSCLLNGSVEVA--PRAGLADAICDLVSTGATLEAN--GLREVE 186 (299)
T ss_dssp CCCCGGGGT--TCEEEESCHHHHHHHHH-HHTCC-CEEEECSSCTTHH--HHTTSCSEEEEEESSCHHHHHT--TEEEEE
T ss_pred CCCChHHhC--CCEEEeCcHHHHHHHHH-HcCCc-EEEEECCCceeec--cCCCccceEEecccCHHHHHHC--CCEEeE
Confidence 445677874 88999988888999995 45654 3444443333322 3347889999877766665443 466665
Q ss_pred CccccCccEEEecCCC--cc-hHHHHHHHHhhh
Q 002211 781 QEFTKSGWGFAFPRDS--PL-AIDMSTAILTLS 810 (953)
Q Consensus 781 ~~~~~~~~~~~~~k~s--pl-~~~~n~~i~~l~ 810 (953)
..+ ...-.++.++.+ +. .+.++..+.++.
T Consensus 187 ~I~-~SsA~LI~n~~s~~~~k~~~i~~l~~rl~ 218 (299)
T 1h3d_A 187 VIY-RSKACLIQRDGEMEESKQQLIDKLLTRIQ 218 (299)
T ss_dssp EEE-EECEEEEEESSCCCHHHHHHHHHHHHHHH
T ss_pred EEE-eeEEEEEEeccccChhHHHHHHHHHHHHH
Confidence 444 444566777776 22 245666666664
No 249
>3m9w_A D-xylose-binding periplasmic protein; xylose binding protein, conformational changes, SUGA protein; 2.15A {Escherichia coli} PDB: 3m9x_A* 3ma0_A*
Probab=69.32 E-value=15 Score=38.07 Aligned_cols=79 Identities=15% Similarity=0.119 Sum_probs=60.0
Q ss_pred cEEEEEEec--CccccchHHHHHHHHHhcCcEEEEEEecCCCCCCChHHHHHHHHHHhcCCceEEEEEcchhh-HHHHHH
Q 002211 183 GEVIAIFND--DDQGRNGVTALGDKLAEIRCKISYKSALPPDQSVTETDVRNELVKVRMMEARVIVVHGYSRT-GLMVFD 259 (953)
Q Consensus 183 ~~vaii~~d--~~~g~~~~~~l~~~l~~~g~~v~~~~~~~~~~~~~~~d~~~~l~~i~~~~~~vii~~~~~~~-~~~~~~ 259 (953)
++|+++..+ ++|.......+.+++++.|..+..... . .+.......++.+.+.++|.||+...... ....++
T Consensus 3 ~~Igvi~~~~~~~~~~~~~~gi~~~a~~~g~~~~~~~~-~----~~~~~~~~~i~~l~~~~vdgiIi~~~~~~~~~~~~~ 77 (313)
T 3m9w_A 3 VKIGMAIDDLRLERWQKDRDIFVKKAESLGAKVFVQSA-N----GNEETQMSQIENMINRGVDVLVIIPYNGQVLSNVVK 77 (313)
T ss_dssp CEEEEEESCCSSSTTHHHHHHHHHHHHHTSCEEEEEEC-T----TCHHHHHHHHHHHHHTTCSEEEEECSSTTSCHHHHH
T ss_pred cEEEEEeCCCCChHHHHHHHHHHHHHHHcCCEEEEECC-C----CCHHHHHHHHHHHHHcCCCEEEEeCCChhhhHHHHH
Confidence 578888864 788889999999999999998876432 2 22555667788888899999999876543 356788
Q ss_pred HHHHcCC
Q 002211 260 VAQRLGM 266 (953)
Q Consensus 260 ~a~~~g~ 266 (953)
++.+.|+
T Consensus 78 ~~~~~~i 84 (313)
T 3m9w_A 78 EAKQEGI 84 (313)
T ss_dssp HHHTTTC
T ss_pred HHHHCCC
Confidence 8887764
No 250
>3muq_A Uncharacterized conserved protein; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; 2.05A {Vibrio parahaemolyticus}
Probab=68.68 E-value=48 Score=32.92 Aligned_cols=74 Identities=11% Similarity=0.034 Sum_probs=50.7
Q ss_pred EEeeHHHHHHHHHhCCCcccEEEeeCCCCCCCCChHHHHHHHHcCceeEEEecEEEecCcc---ceeeccccceecceEE
Q 002211 511 HGYCIDVFLAAVRLLPYAVPYKFIPYGDGHKNPTYSELINQITTGVFDAAVGDIAIVTNRT---KAVDFTQPYIESGLVV 587 (953)
Q Consensus 511 ~G~~~dll~~la~~l~~~~~~~~~~~~~~~~n~~~~~~i~~l~~g~~Di~~~~~~~t~~r~---~~vdft~p~~~~~~~~ 587 (953)
.|+.-+|+..+.++.|.++.+.+. .-..+++++.+|.+|+.+..-....+.. ....-..|+....+++
T Consensus 18 ~~ll~~L~~~Fek~~gv~V~~~~~---------gSg~ll~qi~~G~aDv~isa~~~~~~~l~~~g~~~~~~~~a~N~lVl 88 (237)
T 3muq_A 18 SGLLDYLLPQFEKDTGYKVDVIAA---------GTGKALKMGENGDVDLVMTHAPKAEGTFVEKGYGVLPRKLMYNDFVI 88 (237)
T ss_dssp HTHHHHHHHHHHHHHCCEEEEEEE---------CHHHHHHHHHTTSSSEEEECCHHHHHHHHHTTSEEEEEEEEEEEEEE
T ss_pred hhHHHHHHHHHHHHhCceEEEEEc---------ChHHHHHHHhcCCCCEEEecCchhHHHHHhcCCccccEEEEeCCEEE
Confidence 366778889999888866665553 3667899999999999875332221110 0111246888899999
Q ss_pred EEeccc
Q 002211 588 VAPVRK 593 (953)
Q Consensus 588 ~v~~~~ 593 (953)
++|+..
T Consensus 89 V~P~~~ 94 (237)
T 3muq_A 89 VGPKAD 94 (237)
T ss_dssp EECTTC
T ss_pred EEeCCC
Confidence 999876
No 251
>2czl_A Hypothetical protein TTHA1568; conserved hypothetical protein, extremely thermoph bacteria, structural genomics, NPPSFA; HET: CME TLA XPE; 1.55A {Thermus thermophilus} SCOP: c.94.1.1 PDB: 2dbp_A* 3a3u_A*
Probab=67.75 E-value=12 Score=38.04 Aligned_cols=59 Identities=12% Similarity=0.022 Sum_probs=39.6
Q ss_pred hHHhhhCCCeEEEEeCchHHHHHHHhhCCCccceEeCCCHHHHHHHHHcCCcEEEEcc-chhHH
Q 002211 705 IDTLMTSNDRVGYQVGSFAENYLIEELSIPKSRLVALGSPEEYAIALENRTVAAVVDE-RPYID 767 (953)
Q Consensus 705 l~dL~~~~~~ig~~~~s~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~g~~~a~~~~-~~~~~ 767 (953)
++||. |++|++..++....++.+.+- ...+++.. ...+...++.+|++||.+.- .+.+.
T Consensus 91 ~~dLk--Gk~Ia~~~~~~~~~~ll~~ll-~~~~~~~~-~~~~~~~al~~G~vDa~~~~~ep~~~ 150 (272)
T 2czl_A 91 LQALE--GLRVAVPGRHTTAYFLLSLYA-QGFVPVEV-RYDRILPMVAQGEVEAGLIIHESRFT 150 (272)
T ss_dssp CSCCT--TCEEEESCTTSHHHHHHHHHC-SSCEEEEC-CGGGHHHHHHTTSSSEEEECTTHHHH
T ss_pred hHHhC--CCEEEeCCCCchHHHHHHHHh-ccCceeec-ChHHHHHHHHCCCCCEEEEecchhhh
Confidence 67886 999999876655444333331 11244433 55689999999999999975 66665
No 252
>3hn0_A Nitrate transport protein; ABC transporter, structural genomics, joint center for struc genomics, JCSG, protein structure initiative; 1.75A {Parabacteroides distasonis}
Probab=67.14 E-value=13 Score=38.18 Aligned_cols=62 Identities=11% Similarity=0.057 Sum_probs=43.0
Q ss_pred CCCeEEEE-eCchHHHHHH---HhhCCCccceEeCC-CHHHHHHHHHcCCcEEEEccchhHHHHHhcC
Q 002211 711 SNDRVGYQ-VGSFAENYLI---EELSIPKSRLVALG-SPEEYAIALENRTVAAVVDERPYIDLFLSDH 773 (953)
Q Consensus 711 ~~~~ig~~-~~s~~~~~l~---~~~~~~~~~~~~~~-~~~~~~~~l~~g~~~a~~~~~~~~~~~~~~~ 773 (953)
.|++|++. .|+.....++ ++.++ ..+++... ++.+...++.+|++||.+...+++.....+.
T Consensus 95 kGK~Iav~~~gs~~~~ll~~~L~~~Gl-dv~~~~~~~~~~~~~~al~~G~vDa~~~~eP~~~~a~~~~ 161 (283)
T 3hn0_A 95 KEPALYVFGNGTTPDILTRYYLGRQRL-DYPLNYAFNTAGEITQGILAGKVNRAVLGEPFLSIALRKD 161 (283)
T ss_dssp CSCCEECSSTTSHHHHHHHHHHHHHTC-CCCEECSCCSHHHHHHHHHHTSCSEEEECTTHHHHHHHHC
T ss_pred CCCEEEecCCCCcHHHHHHHHHHHcCC-ceEEEEccCCHHHHHHHHHcCCCCEEEecccHHHHHHhhC
Confidence 38999985 5665443332 23455 34555555 6899999999999999998888877655443
No 253
>3g1w_A Sugar ABC transporter; sugar-binding protein, bacillus halod target 11229F, transport protein, structural genomics; 2.02A {Bacillus halodurans c-125}
Probab=66.48 E-value=13 Score=38.47 Aligned_cols=80 Identities=10% Similarity=0.079 Sum_probs=58.9
Q ss_pred cEEEEEEec--CccccchHHHHHHHHHhcCcEEEEEEecCCCCCCChHHHHHHHHHHhcCCceEEEEEcch-hhHHHHHH
Q 002211 183 GEVIAIFND--DDQGRNGVTALGDKLAEIRCKISYKSALPPDQSVTETDVRNELVKVRMMEARVIVVHGYS-RTGLMVFD 259 (953)
Q Consensus 183 ~~vaii~~d--~~~g~~~~~~l~~~l~~~g~~v~~~~~~~~~~~~~~~d~~~~l~~i~~~~~~vii~~~~~-~~~~~~~~ 259 (953)
++++++..+ ++|.......+.+++++.|..+.... ... .+.......++.+.+.++|.||+.... ......++
T Consensus 5 ~~I~~i~~~~~~~~~~~~~~gi~~~a~~~g~~~~~~~--~~~--~~~~~~~~~i~~l~~~~vdgiIi~~~~~~~~~~~~~ 80 (305)
T 3g1w_A 5 ETYMMITFQSGMDYWKRCLKGFEDAAQALNVTVEYRG--AAQ--YDIQEQITVLEQAIAKNPAGIAISAIDPVELTDTIN 80 (305)
T ss_dssp CEEEEEESSTTSTHHHHHHHHHHHHHHHHTCEEEEEE--CSS--SCHHHHHHHHHHHHHHCCSEEEECCSSTTTTHHHHH
T ss_pred ceEEEEEccCCChHHHHHHHHHHHHHHHcCCEEEEeC--CCc--CCHHHHHHHHHHHHHhCCCEEEEcCCCHHHHHHHHH
Confidence 678888854 67888889999999999999887532 221 235566677888888899999987654 33456788
Q ss_pred HHHHcCC
Q 002211 260 VAQRLGM 266 (953)
Q Consensus 260 ~a~~~g~ 266 (953)
++.+.|+
T Consensus 81 ~~~~~~i 87 (305)
T 3g1w_A 81 KAVDAGI 87 (305)
T ss_dssp HHHHTTC
T ss_pred HHHHCCC
Confidence 8888775
No 254
>2hxw_A Major antigenic peptide PEB3; periplasmic binding protein, N-glycosylation, structural genomics; HET: FLC; 1.60A {Campylobacter jejuni} PDB: 3fjm_A 3fjg_A 3fir_A* 3fj7_A*
Probab=65.59 E-value=25 Score=34.57 Aligned_cols=69 Identities=9% Similarity=0.035 Sum_probs=40.3
Q ss_pred HHHHHHHHHhCCCcccEEEeeCCCCCCCCChHHHHHHHHcCceeEEEecEEEecCc--cc---eeec--cccceecceEE
Q 002211 515 IDVFLAAVRLLPYAVPYKFIPYGDGHKNPTYSELINQITTGVFDAAVGDIAIVTNR--TK---AVDF--TQPYIESGLVV 587 (953)
Q Consensus 515 ~dll~~la~~l~~~~~~~~~~~~~~~~n~~~~~~i~~l~~g~~Di~~~~~~~t~~r--~~---~vdf--t~p~~~~~~~~ 587 (953)
-++++.+.++.|.++++.+ ++-.+++.++. +.+|+++.+-....++ .+ .++. ..++....+++
T Consensus 16 ~~~~~~F~~~~gi~V~~~~---------~~s~~l~~~l~-~~~Dv~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~l 85 (237)
T 2hxw_A 16 KDIANKYSEKTGVKVNVNF---------GPQATWFEKAK-KDADILFGASDQSALAIASDFGKDFNVSKIKPLYFREAII 85 (237)
T ss_dssp HHHHHHHHHHHCCCEEEEE---------SSHHHHHHHHH-HHCSEEEESSHHHHHHHHTTSGGGCCGGGCEEEEEEEEEE
T ss_pred HHHHHHHHHHhCceEEEEe---------CChHHHHHHhc-cCCCEEEeCCHHHHHHHHHhcccccCcccccccccCceEE
Confidence 3677778788887766533 44678888888 8999987643111100 11 2221 23455566666
Q ss_pred EEeccc
Q 002211 588 VAPVRK 593 (953)
Q Consensus 588 ~v~~~~ 593 (953)
+++...
T Consensus 86 ~~~~~~ 91 (237)
T 2hxw_A 86 LTQKGN 91 (237)
T ss_dssp EESTTC
T ss_pred EEeCCC
Confidence 666543
No 255
>2xxp_A CPS2A; replication, peptidoglycan, LCP, LYTR; HET: DSL PEG; 1.69A {Streptococcus pneumoniae} PDB: 3tep_A* 3tfl_A* 2xxq_A* 3tel_A* 4de8_A*
Probab=65.28 E-value=8.5 Score=41.78 Aligned_cols=66 Identities=17% Similarity=0.066 Sum_probs=51.2
Q ss_pred CCCCChHHhhhCCCeEEEEeCchHHHHHHH------hhCCCccceEeCCCHHHHHHHHHcCCcEEEEccchhHHHHH
Q 002211 700 SPIKGIDTLMTSNDRVGYQVGSFAENYLIE------ELSIPKSRLVALGSPEEYAIALENRTVAAVVDERPYIDLFL 770 (953)
Q Consensus 700 ~~I~sl~dL~~~~~~ig~~~~s~~~~~l~~------~~~~~~~~~~~~~~~~~~~~~l~~g~~~a~~~~~~~~~~~~ 770 (953)
..|++++||. | ||++.++..+.+... +.+. ..+++.|++..+++.+|.+|++||++.+..+...+.
T Consensus 26 s~i~sl~DLk--g--vgv~~~~~~~~~~~~~~~i~~~~g~-~~~~~~y~~~~~a~~aL~nG~vDAiv~~~~~~~~le 97 (398)
T 2xxp_A 26 SEIENVTQLT--S--VTAPTGTDNENIQKLLADIKSSQNT-DLTVNQSSSYLAAYKSLIAGETKAIVLNSVFENIIE 97 (398)
T ss_dssp CSCCSGGGCS--E--EEECTTTSHHHHHHHHHHHHHHSCC-CCEEEECSSHHHHHHHHHTTSCSCEEEEHHHHHHHH
T ss_pred CCcCCHHHhc--C--eeeECCCCHHHHHHHHHHHHHhhCC-cceEEecCCHHHHHHHHHcCCCCEEEEchHHHHHHH
Confidence 7899999996 4 999988766554422 2232 145789999999999999999999999887766654
No 256
>3cvg_A Putative metal binding protein; PSI-II, NYSGXRC, periplasmic, structural GENO protein structure initiative; 1.97A {Coccidioides immitis}
Probab=65.09 E-value=67 Score=32.91 Aligned_cols=73 Identities=11% Similarity=0.208 Sum_probs=47.8
Q ss_pred EeeHHHHHHHHHh---C---CCcccEEEeeCCCCCCCCChHHHHHHHHcCceeEEEecEEEecCcc--ceeec-cc-cce
Q 002211 512 GYCIDVFLAAVRL---L---PYAVPYKFIPYGDGHKNPTYSELINQITTGVFDAAVGDIAIVTNRT--KAVDF-TQ-PYI 581 (953)
Q Consensus 512 G~~~dll~~la~~---l---~~~~~~~~~~~~~~~~n~~~~~~i~~l~~g~~Di~~~~~~~t~~r~--~~vdf-t~-p~~ 581 (953)
.+..++++.+.++ . + ++++... ++...++.+|.+|++|+++..-....+.. ..+.+ .. ++.
T Consensus 33 ~~lp~ll~~F~~~~~~~~~P~--v~v~l~~-------~~s~~l~~~l~~G~~Dl~i~~~~~~~~~l~~~~~~~~~~~~l~ 103 (294)
T 3cvg_A 33 GLVKELADAFIKSKVDSGSAP--FKVAWYK-------SDTTVTINYLKDGIVDVGITYSPVAERISIKHGISESPSYYAF 103 (294)
T ss_dssp THHHHHHHHHHHHHHSCC-----CEEEEEE-------CCHHHHHHHHHTTSCSEEEESCHHHHHHHHHTTSBCSSCEEEE
T ss_pred HHHHHHHHHHHhhhcccCCCC--eEEEEEe-------CCHHHHHHHHHcCCCcEEEEcCchhhhHHHhCCcccceeeeEE
Confidence 4567788899888 7 6 4455544 56889999999999999875321111100 01112 24 888
Q ss_pred ecceEEEEeccc
Q 002211 582 ESGLVVVAPVRK 593 (953)
Q Consensus 582 ~~~~~~~v~~~~ 593 (953)
...+++++|...
T Consensus 104 ~d~lvlv~~~~h 115 (294)
T 3cvg_A 104 RDHFMLIGPPSN 115 (294)
T ss_dssp EEEEEEEECTTC
T ss_pred eccEEEEecCCC
Confidence 899999998765
No 257
>4dik_A Flavoprotein; TM0755, electron transport, DI-iron protein; 1.75A {Thermotoga maritima} PDB: 4dil_A 1vme_A*
Probab=65.08 E-value=26 Score=38.24 Aligned_cols=144 Identities=10% Similarity=0.011 Sum_probs=83.5
Q ss_pred EEccCChhhHHHHHHhhhhCCCcEEEeecCCCCCCCCCCCcEEEccCChHHHHHHHHHHHHH-cCCcEEEEEEecCcccc
Q 002211 118 IVGPQSAVMAHVLSHLANELQVPLLSFTALDPTLSPLQYPFFVQTAPNDLYLMSAIAEMVSY-FGWGEVIAIFNDDDQGR 196 (953)
Q Consensus 118 iiGp~~S~~a~av~~v~~~~~vP~Is~~at~~~ls~~~~p~~fr~~p~d~~~~~ai~~~l~~-~~w~~vaii~~d~~~g~ 196 (953)
++||.......++. -.....+-+|.|+-. | ++|-.+ ......-.++.+. ..-++|+|+| ++.||.
T Consensus 213 i~~p~~~~v~~~L~-kl~~Ldi~~I~P~HG-p---------i~r~~~--~~ii~~Y~~w~~~~~~~~~v~I~Y-~S~yGn 278 (410)
T 4dik_A 213 VIGHYKNYILEGAE-KLSSLKIKALLPGHG-L---------IWKKDP--QRLLNHYVSVAKGDPKKGKVTVIY-DSMYGF 278 (410)
T ss_dssp HHGGGHHHHHHHHH-HHHTSCCSEEEESSS-C---------BBSSCH--HHHHHHHHHHHHTCCCTTEEEEEE-ECSSSH
T ss_pred hccchHHHHHHHHH-HHhCCCCCEEecCCc-c---------hhhcCH--HHHHHHHHHhhcccccccceeeEE-ecccCh
Confidence 45666544444443 344567777776321 2 233221 1111222222222 1235899998 556665
Q ss_pred c--hHHHHHHHHHhcCcEEEEEEecCCCCCCChHHHHHHHHHHhcCCceEEEEEcch------hhHHHHHHHHHHcCCCC
Q 002211 197 N--GVTALGDKLAEIRCKISYKSALPPDQSVTETDVRNELVKVRMMEARVIVVHGYS------RTGLMVFDVAQRLGMMD 268 (953)
Q Consensus 197 ~--~~~~l~~~l~~~g~~v~~~~~~~~~~~~~~~d~~~~l~~i~~~~~~vii~~~~~------~~~~~~~~~a~~~g~~~ 268 (953)
. +++.+.+.+.+.|++++........ .++.+..+..+. +++.|++.+.. +....++.........+
T Consensus 279 Te~mA~~ia~gl~~~Gv~~~~~~~~d~~----~~~~s~i~~~i~--~~~~ivlGspT~~~~~~p~~~~~l~~l~~~~~~~ 352 (410)
T 4dik_A 279 VENVMKKAIDSLKEKGFTPVVYKFSDEE----RPAISEILKDIP--DSEALIFGVSTYEAEIHPLMRFTLLEIIDKANYE 352 (410)
T ss_dssp HHHHHHHHHHHHHHTTCEEEEEEECSSC----CCCHHHHHHHST--TCSEEEEEECCTTSSSCHHHHHHHHHHHHHCCCC
T ss_pred HHHHHHHHHHHHHhcCCceEEEEeccCC----CCCHHHHHHHHH--hCCeEEEEeCCcCCcCCHHHHHHHHHHHhcccCC
Confidence 4 6899999999999987654444433 456666677664 56777776543 45566777777776665
Q ss_pred CceEEEEeCcccc
Q 002211 269 SGYVWIATTWLST 281 (953)
Q Consensus 269 ~~~~wi~~~~~~~ 281 (953)
+.-..+++.+|..
T Consensus 353 K~~~~FGSyGWsg 365 (410)
T 4dik_A 353 KPVLVFGVHGWAP 365 (410)
T ss_dssp CEEEEEEECCCCC
T ss_pred CEEEEEECCCCCc
Confidence 5555667767764
No 258
>1zuw_A Glutamate racemase 1; (R)-glutamate, peptidoglycan biosynthesi isomerase; HET: DGL; 1.75A {Bacillus subtilis}
Probab=64.96 E-value=46 Score=33.81 Aligned_cols=120 Identities=10% Similarity=0.102 Sum_probs=70.5
Q ss_pred HHHHHHHHHh-cCcEEEEccCChhhHHHHHHhhhhCCCcEEEeecCCCCCCCCCCCcEEEccCChHHHHHHHHHH-HHHc
Q 002211 103 SIMGALQFME-TDTLAIVGPQSAVMAHVLSHLANELQVPLLSFTALDPTLSPLQYPFFVQTAPNDLYLMSAIAEM-VSYF 180 (953)
Q Consensus 103 a~~~a~~li~-~~v~aiiGp~~S~~a~av~~v~~~~~vP~Is~~at~~~ls~~~~p~~fr~~p~d~~~~~ai~~~-l~~~ 180 (953)
..+.+..|.+ .++.+|+=+..+..+.++..+-+..++|+|... ++.++. ++..
T Consensus 54 ~~~~~~~L~~~~g~d~iViACNTas~~~l~~lr~~~~iPVigii-------------------------epa~~~A~~~~ 108 (272)
T 1zuw_A 54 TWELTNYLLENHHIKMLVIACNTATAIALDDIQRSVGIPVVGVI-------------------------QPGARAAIKVT 108 (272)
T ss_dssp HHHHHHHHHHHSCCSEEEECCHHHHHHHHHHHHHHCSSCEEESH-------------------------HHHHHHHHHHC
T ss_pred HHHHHHHHHhhcCCCEEEEeCchhhHHHHHHHHHHCCCCEEccc-------------------------HHHHHHHHHhc
Confidence 3455666777 799999988887776677778888899999631 122222 2334
Q ss_pred CCcEEEEEEecCccccchHHHHHHHHHhc--CcEEEEEEe------cCCCCCCC----hHHHHHHHHHHhcCCceEEEEE
Q 002211 181 GWGEVIAIFNDDDQGRNGVTALGDKLAEI--RCKISYKSA------LPPDQSVT----ETDVRNELVKVRMMEARVIVVH 248 (953)
Q Consensus 181 ~w~~vaii~~d~~~g~~~~~~l~~~l~~~--g~~v~~~~~------~~~~~~~~----~~d~~~~l~~i~~~~~~vii~~ 248 (953)
+-++|+++.....--. ..+++.+++. |.+|..... +..+. .+ ...+...+..+++.++|+||+.
T Consensus 109 ~~~rIgVlaT~~T~~s---~~y~~~i~~~~~~~~v~~~~~~~~v~~ve~g~-~~~~~~~~~l~~~l~~l~~~~~D~iVLG 184 (272)
T 1zuw_A 109 DNQHIGVIGTENTIKS---NAYEEALLALNPDLKVENLACPLLVPFVESGK-FLDQTADEIVKTSLYPLKDTSIDSLILG 184 (272)
T ss_dssp SSSEEEEEECHHHHHT---THHHHHHHHHCTTCEEEEEECTTHHHHHTSCC-CCHHHHHHHHHHHHHHHHHSCCSEEEEE
T ss_pred CCCEEEEEEChhhhhh---hHHHHHHHHhCCCCEEEeccCHHHHHHHHCCC-CCCHHHHHHHHHHHHHHHhcCCCEEEEC
Confidence 6689999886432211 2244555544 566542211 11110 11 2334555666666788888887
Q ss_pred cch
Q 002211 249 GYS 251 (953)
Q Consensus 249 ~~~ 251 (953)
|..
T Consensus 185 CTh 187 (272)
T 1zuw_A 185 CTH 187 (272)
T ss_dssp STT
T ss_pred ccC
Confidence 654
No 259
>3ist_A Glutamate racemase; structural genomics, cell WALL biogenesis/degradation, isomerase, peptidoglycan synthesis; HET: MSE; 1.65A {Listeria monocytogenes} PDB: 3hfr_A* 3isv_A*
Probab=64.35 E-value=24 Score=35.93 Aligned_cols=147 Identities=8% Similarity=0.057 Sum_probs=79.6
Q ss_pred CCCcEEEEEEecCCC------ChHH----HHHHHHHHHhcCcEEEEccCChhhHHHHHHhhhhCCCcEEEeecCCCCCCC
Q 002211 84 LGGRKLSITMHDAKF------NGFL----SIMGALQFMETDTLAIVGPQSAVMAHVLSHLANELQVPLLSFTALDPTLSP 153 (953)
Q Consensus 84 l~g~~l~l~~~D~~~------~~~~----a~~~a~~li~~~v~aiiGp~~S~~a~av~~v~~~~~vP~Is~~at~~~ls~ 153 (953)
||+..+- .+.|+.. ++.. +.+.+..|.+.++.+|+=+..+..+.++-.+-+..++|+|...
T Consensus 28 lP~~~~i-y~~D~a~~PYG~ks~~~i~~~~~~~~~~L~~~g~~~IVIACNTa~~~al~~lr~~~~iPvigii-------- 98 (269)
T 3ist_A 28 LPHEQVY-YLGDTARCPYGPRDKEEVAKFTWEMTNFLVDRGIKMLVIACNTATAAALYDIREKLDIPVIGVI-------- 98 (269)
T ss_dssp CTTCCEE-EEECGGGCCCTTSCHHHHHHHHHHHHHHHHHTTCSEEEECCHHHHHHHHHHHHHHCSSCEEESH--------
T ss_pred CCCCcEE-EEeCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCEEEEeCCCccHHHHHHHHHhcCCCEEeec--------
Confidence 3655554 3567642 2222 2344455666699999998877777677778888899999520
Q ss_pred CCCCcEEEccCChHHHHHHHHHHHHHcCCcEEEEEEecCccccchHHHHHHHHHhc--CcEEEEEEe------cCCCCC-
Q 002211 154 LQYPFFVQTAPNDLYLMSAIAEMVSYFGWGEVIAIFNDDDQGRNGVTALGDKLAEI--RCKISYKSA------LPPDQS- 224 (953)
Q Consensus 154 ~~~p~~fr~~p~d~~~~~ai~~~l~~~~w~~vaii~~d~~~g~~~~~~l~~~l~~~--g~~v~~~~~------~~~~~~- 224 (953)
-.++...++..+-++|+++...... ....+++.+++. +..|..... +..+..
T Consensus 99 ----------------~pa~~~A~~~~~~~~IGVLaT~~Ti---~s~~y~~~i~~~~~~~~v~~~~~~~lV~~vE~g~~~ 159 (269)
T 3ist_A 99 ----------------QPGSRAALKATRNNKIGVLGTLGTV---ESMAYPTALKGLNRRVEVDSLACPKFVSVVESGEYK 159 (269)
T ss_dssp ----------------HHHHHHHHHHCSSSEEEEEECHHHH---HHTHHHHHHHHHCTTCEEEEEECHHHHHHHHTTCTT
T ss_pred ----------------HHHHHHHHHHcCCCeEEEEeccchh---hHHHHHHHHHHhCCCCEEeccCCHHHHHHHHcCCCC
Confidence 0112222344566889988855321 123444555554 344432110 001100
Q ss_pred --CChHHHHHHHHHHhcCCceEEEEEcch-hhHHHHH
Q 002211 225 --VTETDVRNELVKVRMMEARVIVVHGYS-RTGLMVF 258 (953)
Q Consensus 225 --~~~~d~~~~l~~i~~~~~~vii~~~~~-~~~~~~~ 258 (953)
.....+...+..+++.++|.||+.|.. +.....+
T Consensus 160 ~~~~~~~l~~~l~~l~~~g~D~iVLGCTh~pll~~~i 196 (269)
T 3ist_A 160 SAIAKKVVAESLLPLKSTKIDTVILGCTHYPLLKPII 196 (269)
T ss_dssp SHHHHHHHHHHHGGGGGSCCCEEEECSTTGGGGHHHH
T ss_pred CHHHHHHHHHHHHHHHhCCCCEEEECCCCHHHHHHHH
Confidence 012234555666666788888886654 4333333
No 260
>3ce9_A Glycerol dehydrogenase; NP_348253.1, 3-dehydroquinate syntha structural genomics, joint center for structural genomics; HET: MSE; 2.37A {Clostridium acetobutylicum atcc 824}
Probab=63.77 E-value=14 Score=39.43 Aligned_cols=97 Identities=7% Similarity=0.030 Sum_probs=66.1
Q ss_pred HHHHHHHcCCcEEEEEEecCccccchHHHHHHHHHhcCcEEEEEEecCCCCCCChHHHHHHHHHHhcCCceEEEEEcch-
Q 002211 173 IAEMVSYFGWGEVIAIFNDDDQGRNGVTALGDKLAEIRCKISYKSALPPDQSVTETDVRNELVKVRMMEARVIVVHGYS- 251 (953)
Q Consensus 173 i~~~l~~~~w~~vaii~~d~~~g~~~~~~l~~~l~~~g~~v~~~~~~~~~~~~~~~d~~~~l~~i~~~~~~vii~~~~~- 251 (953)
+.++++.+|.+++.+|+....+. ...+.+.+.+++.|+++......+ + .+.+.+... +.+++.++|+||..+.+
T Consensus 25 l~~~l~~~g~~~~livtd~~~~~-~~~~~v~~~L~~~g~~~~~~~~~~-~--~~~~~v~~~-~~~~~~~~d~IIavGGGs 99 (354)
T 3ce9_A 25 IGQIIKKGNFKRVSLYFGEGIYE-LFGETIEKSIKSSNIEIEAVETVK-N--IDFDEIGTN-AFKIPAEVDALIGIGGGK 99 (354)
T ss_dssp HHHHHGGGTCSEEEEEEETTHHH-HHHHHHHHHHHTTTCEEEEEEEEC-C--CBHHHHHHH-HTTSCTTCCEEEEEESHH
T ss_pred HHHHHHhcCCCeEEEEECccHHH-HHHHHHHHHHHHcCCeEEEEecCC-C--CCHHHHHHH-HHhhhcCCCEEEEECChH
Confidence 66778888889999998665443 467888889988898775433233 3 346777777 77888899999977654
Q ss_pred -hhHHHHHHHHHHcCCCCCceEEEEeCcc
Q 002211 252 -RTGLMVFDVAQRLGMMDSGYVWIATTWL 279 (953)
Q Consensus 252 -~~~~~~~~~a~~~g~~~~~~~wi~~~~~ 279 (953)
-|+.+++... .| ..++-|.|...
T Consensus 100 v~D~aK~vA~~--~~---~p~i~IPTT~~ 123 (354)
T 3ce9_A 100 AIDAVKYMAFL--RK---LPFISVPTSTS 123 (354)
T ss_dssp HHHHHHHHHHH--HT---CCEEEEESCCS
T ss_pred HHHHHHHHHhh--cC---CCEEEecCccc
Confidence 5666666532 23 34566666543
No 261
>2jfq_A Glutamate racemase; cell WALL, isomerase, cell shape, peptidoglycan synthesis, peptidoglycan biosynthesis; HET: DGL; 2.15A {Staphylococcus aureus}
Probab=62.71 E-value=39 Score=34.71 Aligned_cols=120 Identities=13% Similarity=0.098 Sum_probs=66.0
Q ss_pred HHHHHHHHhcCcEEEEccCChhhHHHHHHhhhhCCCcEEEeecCCCCCCCCCCCcEEEccCChHHHHHHHHH-HHHHcCC
Q 002211 104 IMGALQFMETDTLAIVGPQSAVMAHVLSHLANELQVPLLSFTALDPTLSPLQYPFFVQTAPNDLYLMSAIAE-MVSYFGW 182 (953)
Q Consensus 104 ~~~a~~li~~~v~aiiGp~~S~~a~av~~v~~~~~vP~Is~~at~~~ls~~~~p~~fr~~p~d~~~~~ai~~-~l~~~~w 182 (953)
.+.+..|.+.++.+|+=+..+..+.++..+-+..++|+|... ++.++ .++..+-
T Consensus 74 ~~~~~~L~~~g~d~IVIaCNTas~~~l~~lr~~~~iPVigi~-------------------------e~a~~~A~~~~~~ 128 (286)
T 2jfq_A 74 VEIARKLMEFDIKMLVIACNTATAVALEYLQKTLSISVIGVI-------------------------EPGARTAIMTTRN 128 (286)
T ss_dssp HHHHHHHTTSCCSEEEECCHHHHHHHHHHHHHHCSSEEEESH-------------------------HHHHHHHHHHCSS
T ss_pred HHHHHHHHHCCCCEEEEeCCchhHHHHHHHHHhCCCCEEecc-------------------------HHHHHHHHHhcCC
Confidence 334444555599999988877776667777788899999631 11221 2333466
Q ss_pred cEEEEEEecCccccchHHHHHHHHHhc--CcEEEEEEec------CCCCCCC----hHHHHHHHHHHhcCCceEEEEEcc
Q 002211 183 GEVIAIFNDDDQGRNGVTALGDKLAEI--RCKISYKSAL------PPDQSVT----ETDVRNELVKVRMMEARVIVVHGY 250 (953)
Q Consensus 183 ~~vaii~~d~~~g~~~~~~l~~~l~~~--g~~v~~~~~~------~~~~~~~----~~d~~~~l~~i~~~~~~vii~~~~ 250 (953)
++|+++...... ....+++.+++. +.+|.....- ..+.... ...+...+..+.+.++|+||+.|.
T Consensus 129 ~rIgVLaT~~T~---~~~~y~~~l~~~~~~~~v~~~~~~~~v~~ie~g~~~~~~~~~~~l~~~~~~l~~~g~D~IVLGCT 205 (286)
T 2jfq_A 129 QNVLVLGTEGTI---KSEAYRTHIKRINPHVEVHGVACPGFVPLVEQMRYSDPTITSIVIHQTLKRWRNSESDTVILGCT 205 (286)
T ss_dssp SEEEEEECHHHH---HHTHHHHHHHHHCTTCEEEEEECTTHHHHHHTTCTTCHHHHHHHHHHHHGGGTTCSCSEEEEESS
T ss_pred CEEEEEeChHHh---cchHHHHHHHHhCCCCEEEecCCHHHHHHHHcCCCCCchhHHHHHHHHHHHHHhCCCCEEEEcCc
Confidence 889998744321 122345555554 5665422110 0110000 122444555555567888888765
Q ss_pred h
Q 002211 251 S 251 (953)
Q Consensus 251 ~ 251 (953)
.
T Consensus 206 h 206 (286)
T 2jfq_A 206 H 206 (286)
T ss_dssp S
T ss_pred C
Confidence 4
No 262
>1jq5_A Glycerol dehydrogenase; oxidoreductase, NAD, glycerol metabolism; HET: NAD; 1.70A {Geobacillus stearothermophilus} SCOP: e.22.1.2 PDB: 1jpu_A* 1jqa_A*
Probab=62.27 E-value=15 Score=39.63 Aligned_cols=95 Identities=14% Similarity=0.092 Sum_probs=66.0
Q ss_pred HHHHHHHcCCcEEEEEEecCccccchHHHHHHHHHhcCcEEEEEEecCCCCCCChHHHHHHHHHHhcCCceEEEEEcch-
Q 002211 173 IAEMVSYFGWGEVIAIFNDDDQGRNGVTALGDKLAEIRCKISYKSALPPDQSVTETDVRNELVKVRMMEARVIVVHGYS- 251 (953)
Q Consensus 173 i~~~l~~~~w~~vaii~~d~~~g~~~~~~l~~~l~~~g~~v~~~~~~~~~~~~~~~d~~~~l~~i~~~~~~vii~~~~~- 251 (953)
+.++++.+| +++.+|+....+. ...+.+.+.|++.|+++.+ ..+... .+.+++...++.+++.++|+||-.+.+
T Consensus 23 l~~~l~~~g-~~~livtd~~~~~-~~~~~v~~~L~~~g~~~~~-~~~~ge--~~~~~v~~~~~~~~~~~~d~IIavGGGs 97 (370)
T 1jq5_A 23 IANYLEGIG-NKTVVIADEIVWK-IAGHTIVNELKKGNIAAEE-VVFSGE--ASRNEVERIANIARKAEAAIVIGVGGGK 97 (370)
T ss_dssp HHHHHTTTC-SEEEEEECHHHHH-HTHHHHHHHHHTTTCEEEE-EECCSS--CBHHHHHHHHHHHHHTTCSEEEEEESHH
T ss_pred HHHHHHHcC-CeEEEEEChHHHH-HHHHHHHHHHHHcCCeEEE-EeeCCC--CCHHHHHHHHHHHHhcCCCEEEEeCChH
Confidence 566777788 9999998654433 4678888999988988753 334433 445678888888888999999977654
Q ss_pred -hhHHHHHHHHHHcCCCCCceEEEEeC
Q 002211 252 -RTGLMVFDVAQRLGMMDSGYVWIATT 277 (953)
Q Consensus 252 -~~~~~~~~~a~~~g~~~~~~~wi~~~ 277 (953)
-|+.+++... .| ..++-|.|.
T Consensus 98 v~D~aK~iA~~--~~---~p~i~IPTT 119 (370)
T 1jq5_A 98 TLDTAKAVADE--LD---AYIVIVPTA 119 (370)
T ss_dssp HHHHHHHHHHH--HT---CEEEEEESS
T ss_pred HHHHHHHHHHh--cC---CCEEEeccc
Confidence 5666666532 23 355666665
No 263
>2jfn_A Glutamate racemase; cell WALL, isomerase, cell shape, UDP- murnac-Ala, peptidoglycan biosynthesis, peptidoglycan synthesis; HET: GLU UMA; 1.9A {Escherichia coli}
Probab=61.91 E-value=36 Score=34.96 Aligned_cols=39 Identities=13% Similarity=0.075 Sum_probs=29.3
Q ss_pred HHHHHHHh-cCcEEEEccCChhhHHHHHHhhhhCCCcEEE
Q 002211 105 MGALQFME-TDTLAIVGPQSAVMAHVLSHLANELQVPLLS 143 (953)
Q Consensus 105 ~~a~~li~-~~v~aiiGp~~S~~a~av~~v~~~~~vP~Is 143 (953)
..+..+++ .++.+|+-+..+..+.++..+-+..++|+|.
T Consensus 74 ~i~~~ll~~~g~d~IviaCNTas~~~l~~lr~~~~iPVig 113 (285)
T 2jfn_A 74 AIVTAVQERYPLALAVVACNTASTVSLPALREKFDFPVVG 113 (285)
T ss_dssp HHHHHHHHHSCCSEEEECCHHHHHHHHHHHHHHCSSCEEC
T ss_pred HHHHHHHHhCCCCEEEEECccccHHHHHHHHHhCCCCEEe
Confidence 33444555 4899999887777766777788888999996
No 264
>3ojc_A Putative aspartate/glutamate racemase; structural genomics, csgid, center for structural genomics O infectious diseases, alpha beta; 1.75A {Yersinia pestis}
Probab=60.31 E-value=8.2 Score=38.42 Aligned_cols=81 Identities=15% Similarity=0.126 Sum_probs=49.6
Q ss_pred HHHHHHHhcCcEEEEccCChhhHHHHHHhhhhCCCcEEEeecCCCCCCCCCCCcEEEccCChHHHHHHHHHHHHHcCCcE
Q 002211 105 MGALQFMETDTLAIVGPQSAVMAHVLSHLANELQVPLLSFTALDPTLSPLQYPFFVQTAPNDLYLMSAIAEMVSYFGWGE 184 (953)
Q Consensus 105 ~~a~~li~~~v~aiiGp~~S~~a~av~~v~~~~~vP~Is~~at~~~ls~~~~p~~fr~~p~d~~~~~ai~~~l~~~~w~~ 184 (953)
+.+..|.+.++.+|+=+..+... .+..+-+..++|+|+. .++.++.+...+-++
T Consensus 67 ~~~~~L~~~g~~~iviaCNTa~~-~~~~l~~~~~iPvi~i-------------------------~~~~~~~a~~~~~~r 120 (231)
T 3ojc_A 67 NAAISLKHAGAEVIVVCTNTMHK-VADDIEAACGLPLLHI-------------------------ADATAVQIKQQGIDK 120 (231)
T ss_dssp HHHHHHHHHTCCEEEECSSGGGG-GHHHHHHHHCSCBCCH-------------------------HHHHHHHHHHTTCCE
T ss_pred HHHHHHHhcCCCEEEEeCCchHH-HHHHHHHhCCCCEecc-------------------------HHHHHHHHHHcCCCE
Confidence 34445555699999988777544 3355666678888842 244444445567789
Q ss_pred EEEEEecCccccchHHHHHHHHHhc-CcEEE
Q 002211 185 VIAIFNDDDQGRNGVTALGDKLAEI-RCKIS 214 (953)
Q Consensus 185 vaii~~d~~~g~~~~~~l~~~l~~~-g~~v~ 214 (953)
|+++......-. ..+++.+++. |+++.
T Consensus 121 VgvLaT~~T~~s---~~y~~~l~~~~g~~v~ 148 (231)
T 3ojc_A 121 IGLLGTRYTMEQ---GFYRGRLTEKHGIEVI 148 (231)
T ss_dssp EEEESCHHHHHS---TTTHHHHHHTTCCEEE
T ss_pred EEEEcCHHHhhc---hHHHHHHHhcCCCEEE
Confidence 999975432211 2234555666 88764
No 265
>1y5e_A Molybdenum cofactor biosynthesis protein B; structural genomics, protein structure initiative, PSI, MCSG, midwest center for structural genomics; 1.90A {Bacillus cereus} SCOP: c.57.1.1
Probab=60.25 E-value=33 Score=32.01 Aligned_cols=67 Identities=12% Similarity=0.091 Sum_probs=50.9
Q ss_pred cCCcEEEEEEecCcccc---chHHHHHHHHHhcCcEEEEEEecCCCCCCChHHHHHHHHHHhc-CCceEEEEEcc
Q 002211 180 FGWGEVIAIFNDDDQGR---NGVTALGDKLAEIRCKISYKSALPPDQSVTETDVRNELVKVRM-MEARVIVVHGY 250 (953)
Q Consensus 180 ~~w~~vaii~~d~~~g~---~~~~~l~~~l~~~g~~v~~~~~~~~~~~~~~~d~~~~l~~i~~-~~~~vii~~~~ 250 (953)
+.--+|++|...|+-|+ .....+.+.+++.|+++.....++.+ .+.+...+.+..+ .++|+||..+.
T Consensus 11 ~~~~rv~Ii~tGdElg~i~Dsn~~~l~~~L~~~G~~v~~~~iv~Dd----~~~i~~~l~~~~~~~~~DlVittGG 81 (169)
T 1y5e_A 11 PKEVRCKIVTISDTRTEETDKSGQLLHELLKEAGHKVTSYEIVKDD----KESIQQAVLAGYHKEDVDVVLTNGG 81 (169)
T ss_dssp -CCCEEEEEEECSSCCTTTCHHHHHHHHHHHHHTCEEEEEEEECSS----HHHHHHHHHHHHTCTTCSEEEEECC
T ss_pred ccCCEEEEEEEcCccCeeccChHHHHHHHHHHCCCeEeEEEEeCCC----HHHHHHHHHHHHhcCCCCEEEEcCC
Confidence 34468999987766543 23567888899999999888778766 7888888888775 37999998754
No 266
>2pjk_A 178AA long hypothetical molybdenum cofactor biosynthesis protein B; 3D-structure, structural genomics, NPPSFA; HET: PEG; 1.90A {Sulfolobus tokodaii} PDB: 3iwt_A*
Probab=60.18 E-value=30 Score=32.65 Aligned_cols=67 Identities=18% Similarity=0.106 Sum_probs=49.9
Q ss_pred cCCcEEEEEEecCc------c-c---cchHHHHHHHHHhcCcEEEEEEecCCCCCCChHHHHHHHHHHhcC-CceEEEEE
Q 002211 180 FGWGEVIAIFNDDD------Q-G---RNGVTALGDKLAEIRCKISYKSALPPDQSVTETDVRNELVKVRMM-EARVIVVH 248 (953)
Q Consensus 180 ~~w~~vaii~~d~~------~-g---~~~~~~l~~~l~~~g~~v~~~~~~~~~~~~~~~d~~~~l~~i~~~-~~~vii~~ 248 (953)
+.--+|++|...|+ . | ......+.+.+++.|.++.....++.+ .+.+...+.+..+. ++|+||..
T Consensus 13 ~~~~rv~IittGde~~~~~~~~G~i~Dsn~~~L~~~l~~~G~~v~~~~iv~Dd----~~~I~~al~~a~~~~~~DlVitt 88 (178)
T 2pjk_A 13 PKSLNFYVITISTSRYEKLLKKEPIVDESGDIIKQLLIENGHKIIGYSLVPDD----KIKILKAFTDALSIDEVDVIIST 88 (178)
T ss_dssp CCCCEEEEEEECHHHHHHHHTTCCCCCHHHHHHHHHHHHTTCEEEEEEEECSC----HHHHHHHHHHHHTCTTCCEEEEE
T ss_pred CCCCEEEEEEeCcccccccccCCeEeehHHHHHHHHHHHCCCEEEEEEEeCCC----HHHHHHHHHHHHhcCCCCEEEEC
Confidence 34467888886542 1 2 345677888999999999887777766 78888888887654 59999987
Q ss_pred cc
Q 002211 249 GY 250 (953)
Q Consensus 249 ~~ 250 (953)
+.
T Consensus 89 GG 90 (178)
T 2pjk_A 89 GG 90 (178)
T ss_dssp SC
T ss_pred CC
Confidence 54
No 267
>3h75_A Periplasmic sugar-binding domain protein; protein structure initiative II (PSI II), sugar binding PROT alpha/beta fold; 1.60A {Pseudomonas fluorescens pf-5}
Probab=60.01 E-value=22 Score=37.61 Aligned_cols=81 Identities=4% Similarity=-0.018 Sum_probs=58.2
Q ss_pred CCcEEEEEEec---CccccchHHHHHHHHHhcCcEEEEEEecCCCCCCChHHHHHHHHHHhc--CCceEEEEEcchhhHH
Q 002211 181 GWGEVIAIFND---DDQGRNGVTALGDKLAEIRCKISYKSALPPDQSVTETDVRNELVKVRM--MEARVIVVHGYSRTGL 255 (953)
Q Consensus 181 ~w~~vaii~~d---~~~g~~~~~~l~~~l~~~g~~v~~~~~~~~~~~~~~~d~~~~l~~i~~--~~~~vii~~~~~~~~~ 255 (953)
+-.+|+++..+ ++|.......+.+++++.|..+.... .. .+.......+.++.+ .++|.||+........
T Consensus 2 ~~~~Ig~i~p~~~~~~f~~~~~~g~~~~a~~~g~~~~~~~-~~----~~~~~~~~~i~~~i~~~~~vDgiIi~~~~~~~~ 76 (350)
T 3h75_A 2 SLTSVVFLNPGNSTETFWVSYSQFMQAAARDLGLDLRILY-AE----RDPQNTLQQARELFQGRDKPDYLMLVNEQYVAP 76 (350)
T ss_dssp -CCEEEEEECSCTTCHHHHHHHHHHHHHHHHHTCEEEEEE-CT----TCHHHHHHHHHHHHHSSSCCSEEEEECCSSHHH
T ss_pred CCCEEEEECCCCCCChHHHHHHHHHHHHHHHcCCeEEEEE-CC----CCHHHHHHHHHHHHhcCCCCCEEEEeCchhhHH
Confidence 34689999864 36888899999999999999887642 11 124444566777776 5999999986555566
Q ss_pred HHHHHHHHcCC
Q 002211 256 MVFDVAQRLGM 266 (953)
Q Consensus 256 ~~~~~a~~~g~ 266 (953)
.+++.+.+.|+
T Consensus 77 ~~~~~~~~~gi 87 (350)
T 3h75_A 77 QILRLSQGSGI 87 (350)
T ss_dssp HHHHHHTTSCC
T ss_pred HHHHHHHhCCC
Confidence 77888877664
No 268
>3l49_A ABC sugar (ribose) transporter, periplasmic substrate-binding subunit; sugar binding/transporter, structural genomics, PSI; HET: UNL; 2.30A {Rhodobacter sphaeroides}
Probab=60.01 E-value=27 Score=35.63 Aligned_cols=79 Identities=6% Similarity=-0.074 Sum_probs=59.4
Q ss_pred cEEEEEEec--CccccchHHHHHHHHHhcCcEEEEEEecCCCCCCChHHHHHHHHHHhcCCceEEEEEcch-hhHHHHHH
Q 002211 183 GEVIAIFND--DDQGRNGVTALGDKLAEIRCKISYKSALPPDQSVTETDVRNELVKVRMMEARVIVVHGYS-RTGLMVFD 259 (953)
Q Consensus 183 ~~vaii~~d--~~~g~~~~~~l~~~l~~~g~~v~~~~~~~~~~~~~~~d~~~~l~~i~~~~~~vii~~~~~-~~~~~~~~ 259 (953)
++|+++..+ +.|.......+.+++++.|..+..... . .+.......++.+.+.++|.||+.... ......++
T Consensus 6 ~~Ig~i~~~~~~~~~~~~~~gi~~~a~~~g~~~~~~~~-~----~~~~~~~~~~~~l~~~~vdgiIi~~~~~~~~~~~~~ 80 (291)
T 3l49_A 6 KTIGITAIGTDHDWDLKAYQAQIAEIERLGGTAIALDA-G----RNDQTQVSQIQTLIAQKPDAIIEQLGNLDVLNPWLQ 80 (291)
T ss_dssp CEEEEEESCCSSHHHHHHHHHHHHHHHHTTCEEEEEEC-T----TCHHHHHHHHHHHHHHCCSEEEEESSCHHHHHHHHH
T ss_pred cEEEEEeCCCCChHHHHHHHHHHHHHHHcCCEEEEEcC-C----CCHHHHHHHHHHHHHcCCCEEEEeCCChhhhHHHHH
Confidence 578888864 667778899999999999998876432 1 224556677888888899999987654 45667788
Q ss_pred HHHHcCC
Q 002211 260 VAQRLGM 266 (953)
Q Consensus 260 ~a~~~g~ 266 (953)
++.+.|+
T Consensus 81 ~~~~~~i 87 (291)
T 3l49_A 81 KINDAGI 87 (291)
T ss_dssp HHHHTTC
T ss_pred HHHHCCC
Confidence 8888775
No 269
>3rfq_A Pterin-4-alpha-carbinolamine dehydratase MOAB2; structural genomics, seattle structural genomics center for infectious disease, ssgcid; HET: B3P; 2.25A {Mycobacterium marinum} PDB: 3tcr_A
Probab=59.49 E-value=24 Score=33.52 Aligned_cols=65 Identities=22% Similarity=0.259 Sum_probs=48.9
Q ss_pred CcEEEEEEecCcc----ccchHHHHHHHHHhcCcEEEEEEecCCCCCCChHHHHHHHHHHhcCCceEEEEEcc
Q 002211 182 WGEVIAIFNDDDQ----GRNGVTALGDKLAEIRCKISYKSALPPDQSVTETDVRNELVKVRMMEARVIVVHGY 250 (953)
Q Consensus 182 w~~vaii~~d~~~----g~~~~~~l~~~l~~~g~~v~~~~~~~~~~~~~~~d~~~~l~~i~~~~~~vii~~~~ 250 (953)
--+|+||...|+- -......+.+.+++.|.++.....++.+ .+.+...+.+..+.++|+||..+.
T Consensus 30 ~~rvaIistGdEl~~G~~Dsn~~~L~~~L~~~G~~v~~~~iv~Dd----~~~I~~al~~a~~~~~DlVIttGG 98 (185)
T 3rfq_A 30 VGRALVVVVDDRTAHGDEDHSGPLVTELLTEAGFVVDGVVAVEAD----EVDIRNALNTAVIGGVDLVVSVGG 98 (185)
T ss_dssp CEEEEEEEECHHHHTTCCCSHHHHHHHHHHHTTEEEEEEEEECSC----HHHHHHHHHHHHHTTCSEEEEESC
T ss_pred CCEEEEEEECcccCCCCcCcHHHHHHHHHHHCCCEEEEEEEeCCC----HHHHHHHHHHHHhCCCCEEEECCC
Confidence 3568888765432 2345678888999999999988888766 788888888876567999998754
No 270
>1b73_A Glutamate racemase; isomerase; 2.30A {Aquifex pyrophilus} SCOP: c.78.2.1 c.78.2.1 PDB: 1b74_A*
Probab=58.93 E-value=23 Score=35.69 Aligned_cols=119 Identities=16% Similarity=0.063 Sum_probs=68.9
Q ss_pred HHHHHHHHHhcCcEEEEccCChhhHHHHHHhhhhCCCcEEEeecCCCCCCCCCCCcEEEccCChHHHHHHHHHH-HHHcC
Q 002211 103 SIMGALQFMETDTLAIVGPQSAVMAHVLSHLANELQVPLLSFTALDPTLSPLQYPFFVQTAPNDLYLMSAIAEM-VSYFG 181 (953)
Q Consensus 103 a~~~a~~li~~~v~aiiGp~~S~~a~av~~v~~~~~vP~Is~~at~~~ls~~~~p~~fr~~p~d~~~~~ai~~~-l~~~~ 181 (953)
..+.+..|.+.++.+|+-+..+..+.++..+-+..++|+|.. .++.++. ++..+
T Consensus 51 ~~~~~~~L~~~g~d~iviaCnTa~~~~~~~lr~~~~iPvigi-------------------------~e~~~~~A~~~~~ 105 (254)
T 1b73_A 51 SLECAGFLKDKGVDIIVVACNTASAYALERLKKEINVPVFGV-------------------------IEPGVKEALKKSR 105 (254)
T ss_dssp HHHHHHHHHTTTCSEEEECCHHHHTTSHHHHHHHSSSCEEES-------------------------HHHHHHHHHHHCS
T ss_pred HHHHHHHHHHCCCCEEEEeCchhhHHHHHHHHHhCCCCEEee-------------------------eHHHHHHHHHccC
Confidence 344555555669999998777766555667777889999962 1222222 33456
Q ss_pred CcEEEEEEecCccccchHHHHHHHHHhcCcEEEEEEecCCCC-CC-----C----hHHHHHHHHHHhcCCceEEEEEcch
Q 002211 182 WGEVIAIFNDDDQGRNGVTALGDKLAEIRCKISYKSALPPDQ-SV-----T----ETDVRNELVKVRMMEARVIVVHGYS 251 (953)
Q Consensus 182 w~~vaii~~d~~~g~~~~~~l~~~l~~~g~~v~~~~~~~~~~-~~-----~----~~d~~~~l~~i~~~~~~vii~~~~~ 251 (953)
-++|+++......-. ..+++.+++.|.++.... .+... .. + ...+...+.++.+. +|+||+.|..
T Consensus 106 ~~rigVlaT~~T~~~---~~y~~~l~~~g~~v~~~~-~~~~v~~ie~g~~~~~~~~~~l~~~~~~l~~~-~d~IILGCT~ 180 (254)
T 1b73_A 106 NKKIGVIGTPATVKS---GAYQRKLEEGGADVFAKA-CPLFAPLAEEGLLEGEITRKVVEHYLKEFKGK-IDTLILGCTH 180 (254)
T ss_dssp SCEEEEEECHHHHHH---CHHHHHHHTTSCEEEEEE-CCCCTTTSCGGGGSGGGHHHHHHHHSTTTTTT-CSEEEECCCC
T ss_pred CCEEEEEEChHHhhh---HHHHHHHHcCCCEEEecC-CHHHHHHHHCCCCCCHHHHHHHHHHHHHHHhc-CCEEEECccC
Confidence 789999986543222 234556667788875322 12110 00 1 12334444455545 9999997765
No 271
>3hl0_A Maleylacetate reductase; structur genomics, PSI-2, protein structure initiative, midwest CENT structural genomics, MCSG; HET: MSE NAD EPE; 1.60A {Agrobacterium tumefaciens str}
Probab=58.81 E-value=13 Score=39.60 Aligned_cols=97 Identities=14% Similarity=0.206 Sum_probs=64.8
Q ss_pred HHHHHHHHHcCCcEEEEEEecCccccchHHHHHHHHHhcCcEEEEEEecCCCCCCChHHHHHHHHHHhcCCceEEEEEcc
Q 002211 171 SAIAEMVSYFGWGEVIAIFNDDDQGRNGVTALGDKLAEIRCKISYKSALPPDQSVTETDVRNELVKVRMMEARVIVVHGY 250 (953)
Q Consensus 171 ~ai~~~l~~~~w~~vaii~~d~~~g~~~~~~l~~~l~~~g~~v~~~~~~~~~~~~~~~d~~~~l~~i~~~~~~vii~~~~ 250 (953)
..+.++++.+|.+++.+|+..... +..+.+.+.|++.+..+ + ..+.++ .+.+.+...++.+++.++|+||-.+.
T Consensus 23 ~~l~~~l~~~g~~r~liVtd~~~~--~~~~~v~~~L~~~~~~v-~-~~v~~~--p~~~~v~~~~~~~~~~~~D~IIavGG 96 (353)
T 3hl0_A 23 ADVAEEIRRLGLSRALVLSTPQQK--GDAEALASRLGRLAAGV-F-SEAAMH--TPVEVTKTAVEAYRAAGADCVVSLGG 96 (353)
T ss_dssp GGHHHHHHHTTCCCEEEECCGGGH--HHHHHHHHHHGGGEEEE-E-CCCCTT--CBHHHHHHHHHHHHHTTCSEEEEEES
T ss_pred HHHHHHHHHhCCCEEEEEecCchh--hHHHHHHHHHhhCCcEE-e-cCcCCC--CcHHHHHHHHHHHhccCCCEEEEeCC
Confidence 346778888999999999865443 35778888888766443 2 223333 44677888888889999999998876
Q ss_pred h--hhHHHHHHHHHHcCCCCCceEEEEeCc
Q 002211 251 S--RTGLMVFDVAQRLGMMDSGYVWIATTW 278 (953)
Q Consensus 251 ~--~~~~~~~~~a~~~g~~~~~~~wi~~~~ 278 (953)
+ -|+.+++... .+ ..++-|.|..
T Consensus 97 Gs~iD~aK~iA~~--~~---~p~i~IPTTa 121 (353)
T 3hl0_A 97 GSTTGLGKAIALR--TD---AAQIVIPTTY 121 (353)
T ss_dssp HHHHHHHHHHHHH--HC---CEEEEEECSS
T ss_pred cHHHHHHHHHHhc--cC---CCEEEEeCCc
Confidence 5 4555555442 23 3455566654
No 272
>2is8_A Molybdopterin biosynthesis enzyme, MOAB; globular alpha/beta fold, structu genomics, NPPSFA; 1.64A {Thermus thermophilus} PDB: 3mch_A
Probab=58.11 E-value=28 Score=32.32 Aligned_cols=63 Identities=16% Similarity=0.134 Sum_probs=47.5
Q ss_pred EEEEEEecCc--cc---cchHHHHHHHHHhcCcEEEEEEecCCCCCCChHHHHHHHHHHhcC-CceEEEEEcc
Q 002211 184 EVIAIFNDDD--QG---RNGVTALGDKLAEIRCKISYKSALPPDQSVTETDVRNELVKVRMM-EARVIVVHGY 250 (953)
Q Consensus 184 ~vaii~~d~~--~g---~~~~~~l~~~l~~~g~~v~~~~~~~~~~~~~~~d~~~~l~~i~~~-~~~vii~~~~ 250 (953)
+|++|...|+ .| ......+.+.+++.|.++.....++.+ .+.+...+++..+. ++|+||..+.
T Consensus 3 ~v~Ii~tGdEl~~G~i~D~n~~~l~~~l~~~G~~v~~~~iv~Dd----~~~i~~~l~~~~~~~~~DlVittGG 71 (164)
T 2is8_A 3 RVGILTVSDKGFRGERQDTTHLAIREVLAGGPFEVAAYELVPDE----PPMIKKVLRLWADREGLDLILTNGG 71 (164)
T ss_dssp EEEEEEECHHHHHTSSCCCHHHHHHHHHTTSSEEEEEEEEECSC----HHHHHHHHHHHHHTSCCSEEEEESC
T ss_pred EEEEEEEcCcccCCCcccchHHHHHHHHHHCCCeEeEEEEcCCC----HHHHHHHHHHHHhcCCCCEEEEcCC
Confidence 6777775544 12 234577889999999999888778766 78888889888764 7999998754
No 273
>2l69_A Rossmann 2X3 fold protein; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Artificial gene}
Probab=57.74 E-value=60 Score=26.04 Aligned_cols=66 Identities=14% Similarity=0.233 Sum_probs=46.2
Q ss_pred ccCChHHHHHHHHHHHHHcCCcEEEEEEecCccccchHHHHHHHHHhcCcEEEEEEecCCCCCCChHHHHHHHHHHh
Q 002211 162 TAPNDLYLMSAIAEMVSYFGWGEVIAIFNDDDQGRNGVTALGDKLAEIRCKISYKSALPPDQSVTETDVRNELVKVR 238 (953)
Q Consensus 162 ~~p~d~~~~~ai~~~l~~~~w~~vaii~~d~~~g~~~~~~l~~~l~~~g~~v~~~~~~~~~~~~~~~d~~~~l~~i~ 238 (953)
....|...++..+.+++.+|..-..+||..| ++..+.|..+.+.+|.+|-.. .+.+||..-|.++.
T Consensus 56 vvvddkewaekairfvkslgaqvliiiydqd---qnrleefsrevrrrgfevrtv--------tspddfkkslerli 121 (134)
T 2l69_A 56 VVVDDKEWAEKAIRFVKSLGAQVLIIIYDQD---QNRLEEFSREVRRRGFEVRTV--------TSPDDFKKSLERLI 121 (134)
T ss_dssp EECSSHHHHHHHHHHHHHHCCCCEEEEECSC---HHHHHHHHHHHHHTTCCEEEE--------SSHHHHHHHHHHHH
T ss_pred EEEccHHHHHHHHHHHHhcCCeEEEEEEeCc---hhHHHHHHHHHHhcCceEEEe--------cChHHHHHHHHHHH
Confidence 3445677788888888888888888887544 466788888888888776532 12567777666653
No 274
>3um7_A Potassium channel subfamily K member 4; potassium ION channel, metal transport; 3.31A {Homo sapiens}
Probab=57.52 E-value=6.1 Score=41.04 Aligned_cols=53 Identities=15% Similarity=0.155 Sum_probs=46.6
Q ss_pred ccchhhHHHHHHHhhccccC--CcccchhHHHHHHHHHHHHHhhhhcccceeeee
Q 002211 641 KQIVTVLWFSFSTMFFAHRE--NTVSTLGRVVLIIWLFVVLIITSSYTASLTSIL 693 (953)
Q Consensus 641 ~~~~~~~~~~~~~l~~~~~~--~~~s~~~R~l~~~w~~~~lil~~~Yta~L~s~L 693 (953)
..+.+++||++.++...|.. .|.+..+|++.++|.++++.+.....+.+...|
T Consensus 114 w~~~~a~yf~~~t~tTvGYGdi~P~T~~gk~~~i~~~l~Gi~~~~~~~~~i~~~l 168 (309)
T 3um7_A 114 WDLGSAFFFSGTIITTIGYGNVALRTDAGRLFCIFYALVGIPLFGILLAGVGDRL 168 (309)
T ss_dssp CSHHHHHHHHHHHHTSCCCCSSCCCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CChhhhhHhhheeeeecccCCCCCCCccchhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35788999999999988755 799999999999999999999999998887665
No 275
>3gbv_A Putative LACI-family transcriptional regulator; NYSGXRC, PSI-II, 11231J, structur genomics, protein structure initiative; 2.20A {Bacteroides fragilis}
Probab=57.47 E-value=29 Score=35.54 Aligned_cols=84 Identities=7% Similarity=-0.057 Sum_probs=59.9
Q ss_pred CCcEEEEEEec---CccccchHHHHHHHHHhc-CcEEEEEEecCCCCCCChHHHHHHHHHHhcCCceEEEEEcchh-hHH
Q 002211 181 GWGEVIAIFND---DDQGRNGVTALGDKLAEI-RCKISYKSALPPDQSVTETDVRNELVKVRMMEARVIVVHGYSR-TGL 255 (953)
Q Consensus 181 ~w~~vaii~~d---~~~g~~~~~~l~~~l~~~-g~~v~~~~~~~~~~~~~~~d~~~~l~~i~~~~~~vii~~~~~~-~~~ 255 (953)
.-++|+++..+ +.|.......+.+++++. |..+......... .+.......++.+.+.++|.||+..... ...
T Consensus 7 ~~~~Igvi~~~~~~~~~~~~~~~gi~~~a~~~~g~~~~~~~~~~~~--~~~~~~~~~i~~l~~~~vdgiii~~~~~~~~~ 84 (304)
T 3gbv_A 7 KKYTFACLLPKHLEGEYWTDVQKGIREAVTTYSDFNISANITHYDP--YDYNSFVATSQAVIEEQPDGVMFAPTVPQYTK 84 (304)
T ss_dssp CCEEEEEEEECCCTTSHHHHHHHHHHHHHHHTGGGCEEEEEEEECS--SCHHHHHHHHHHHHTTCCSEEEECCSSGGGTH
T ss_pred CcceEEEEecCCCCchHHHHHHHHHHHHHHHHHhCCeEEEEEcCCC--CCHHHHHHHHHHHHhcCCCEEEECCCChHHHH
Confidence 34678888754 567788899999999988 7766654432222 2355667778888889999999986644 346
Q ss_pred HHHHHHHHcCC
Q 002211 256 MVFDVAQRLGM 266 (953)
Q Consensus 256 ~~~~~a~~~g~ 266 (953)
..++.+.+.|+
T Consensus 85 ~~~~~~~~~~i 95 (304)
T 3gbv_A 85 GFTDALNELGI 95 (304)
T ss_dssp HHHHHHHHHTC
T ss_pred HHHHHHHHCCC
Confidence 67788888775
No 276
>8abp_A L-arabinose-binding protein; binding proteins; HET: GLA GAL; 1.49A {Escherichia coli} SCOP: c.93.1.1 PDB: 7abp_A* 6abp_A* 1abe_A* 1abf_A* 5abp_A* 1bap_A* 1apb_A* 9abp_A* 2wrz_A
Probab=57.46 E-value=34 Score=35.08 Aligned_cols=78 Identities=10% Similarity=0.063 Sum_probs=58.6
Q ss_pred cEEEEEEec--CccccchHHHHHHHHHhcCcEEEEEEecCCCCCCChHHHHHHHHHHhcCCceEEEEEcch-hhHHHHHH
Q 002211 183 GEVIAIFND--DDQGRNGVTALGDKLAEIRCKISYKSALPPDQSVTETDVRNELVKVRMMEARVIVVHGYS-RTGLMVFD 259 (953)
Q Consensus 183 ~~vaii~~d--~~~g~~~~~~l~~~l~~~g~~v~~~~~~~~~~~~~~~d~~~~l~~i~~~~~~vii~~~~~-~~~~~~~~ 259 (953)
.+|+++..+ ++|.....+.+.+++++.|..+..... .+ .......++.+.+.++|.||+.... ......++
T Consensus 3 ~~Ig~i~~~~~~~~~~~~~~gi~~~a~~~g~~~~~~~~--~~----~~~~~~~i~~l~~~~vdgiii~~~~~~~~~~~~~ 76 (306)
T 8abp_A 3 LKLGFLVKQPEEPWFQTEWKFADKAGKDLGFEVIKIAV--PD----GEKTLNAIDSLAASGAKGFVICTPDPKLGSAIVA 76 (306)
T ss_dssp EEEEEEESCTTSHHHHHHHHHHHHHHHHHTEEEEEEEC--CS----HHHHHHHHHHHHHTTCCEEEEECSCGGGHHHHHH
T ss_pred eEEEEEeCCCCchHHHHHHHHHHHHHHHcCCEEEEeCC--CC----HHHHHHHHHHHHHcCCCEEEEeCCCchhhHHHHH
Confidence 367888754 678888899999999999998865433 12 5556677888888899999998654 44556678
Q ss_pred HHHHcCC
Q 002211 260 VAQRLGM 266 (953)
Q Consensus 260 ~a~~~g~ 266 (953)
++.+.|+
T Consensus 77 ~~~~~~i 83 (306)
T 8abp_A 77 KARGYDM 83 (306)
T ss_dssp HHHHTTC
T ss_pred HHHHCCC
Confidence 8888775
No 277
>3um7_A Potassium channel subfamily K member 4; potassium ION channel, metal transport; 3.31A {Homo sapiens}
Probab=57.18 E-value=8.6 Score=39.91 Aligned_cols=53 Identities=11% Similarity=0.185 Sum_probs=41.5
Q ss_pred cchhhHHHHHHHhhccccC--CcccchhH------HHHHHHHHHHHHhhhhcccceeeeee
Q 002211 642 QIVTVLWFSFSTMFFAHRE--NTVSTLGR------VVLIIWLFVVLIITSSYTASLTSILT 694 (953)
Q Consensus 642 ~~~~~~~~~~~~l~~~~~~--~~~s~~~R------~l~~~w~~~~lil~~~Yta~L~s~Lt 694 (953)
.+.+++||++.++...|.. .|.+..+| ++.++|.++++.+.++-.+.+..++.
T Consensus 224 ~~~da~y~~~vTltTvGyGd~~p~t~~g~~~~~y~~~~~~~il~Gl~~~a~~~~~i~~~~~ 284 (309)
T 3um7_A 224 SKLEAIYFVIVTLTTVGFGDYVAGADPRQDSPAYQPLVWFWILLGLAYFASVLTTIGNWLR 284 (309)
T ss_dssp CHHHHHHHHHHHHTTCCCSSCCTTCCTTCCCSTHHHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred CHHHHHHHHHhheeccccCCCCCCCccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4789999999999988744 56666665 59999999999888887776655553
No 278
>2vvt_A Glutamate racemase; isomerase, peptidoglycan synthesis, cell WALL biogenesis/degradation, cell shape, benzyl purine, MURI inhibitor; HET: I24 DGL; 1.65A {Enterococcus faecalis} PDB: 2jfp_A* 2jfo_A* 2jfu_A 2jfv_A* 2jfw_A*
Probab=57.10 E-value=33 Score=35.33 Aligned_cols=119 Identities=12% Similarity=0.045 Sum_probs=67.2
Q ss_pred HHHHHHHHhcCcEEEEccCChhhHHHHHHhhhhCCCcEEEeecCCCCCCCCCCCcEEEccCChHHHHHHHHH-HHHHcCC
Q 002211 104 IMGALQFMETDTLAIVGPQSAVMAHVLSHLANELQVPLLSFTALDPTLSPLQYPFFVQTAPNDLYLMSAIAE-MVSYFGW 182 (953)
Q Consensus 104 ~~~a~~li~~~v~aiiGp~~S~~a~av~~v~~~~~vP~Is~~at~~~ls~~~~p~~fr~~p~d~~~~~ai~~-~l~~~~w 182 (953)
.+.+..|.++++.+|+=+..+..+.++..+-+..++|+|... ++.++ .+...+-
T Consensus 76 ~~~~~~L~~~g~d~IVIACNTas~~~l~~lr~~~~iPVigii-------------------------epa~~~A~~~~~~ 130 (290)
T 2vvt_A 76 WEMADFLLKKRIKMLVIACNTATAVALEEIKAALPIPVVGVI-------------------------LPGARAAVKVTKN 130 (290)
T ss_dssp HHHHHHHHTTTCSEEEECCHHHHHHHHHHHHHHCSSCEEESS-------------------------HHHHHHHHHHCSS
T ss_pred HHHHHHHHHCCCCEEEEeCcchhHHHHHHHHHhCCCCEEccc-------------------------HHHHHHHHHhcCC
Confidence 444555556699999998877776677788888899999620 11111 1233566
Q ss_pred cEEEEEEecCccccchHHHHHHHHHhc--CcEEEEEEecCC-------CCCC---ChHHHHHHHHHHhcCCceEEEEEcc
Q 002211 183 GEVIAIFNDDDQGRNGVTALGDKLAEI--RCKISYKSALPP-------DQSV---TETDVRNELVKVRMMEARVIVVHGY 250 (953)
Q Consensus 183 ~~vaii~~d~~~g~~~~~~l~~~l~~~--g~~v~~~~~~~~-------~~~~---~~~d~~~~l~~i~~~~~~vii~~~~ 250 (953)
++|+++......-. ..+++.+++. +.+|... .-+. +... ....+...++.+.+.++|+||+.|.
T Consensus 131 ~rIgVLaT~~T~~s---~~y~~~l~~~~~~~~v~~~-~~~~lv~~ve~g~~~~~~~~~~l~~~l~~l~~~g~D~IVLGCT 206 (290)
T 2vvt_A 131 NKIGVIGTLGTIKS---ASYEIAIKSKAPAIEVTSL-ACPKFVPIVESNQYRSSVAKKIVAETLQALQLKGLDTLILGCT 206 (290)
T ss_dssp SEEEEEECHHHHHT---THHHHHHHTTCTTSEEEEE-ECTTHHHHHHTTCTTSHHHHHHHHHHHGGGTTSCCSEEEECST
T ss_pred CEEEEEeCcHhhhh---HHHHHHHHHhCCCCEEEec-cCHHHHHHHHcCCCCCHHHHHHHHHHHHHHHhCCCCEEEECCc
Confidence 89999975533221 1355566655 5555432 1111 1000 0122444455555567788887665
Q ss_pred h
Q 002211 251 S 251 (953)
Q Consensus 251 ~ 251 (953)
.
T Consensus 207 h 207 (290)
T 2vvt_A 207 H 207 (290)
T ss_dssp T
T ss_pred C
Confidence 4
No 279
>1p99_A Hypothetical protein PG110; structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; 1.70A {Staphylococcus aureus subsp} SCOP: c.94.1.1
Probab=56.58 E-value=38 Score=34.94 Aligned_cols=36 Identities=8% Similarity=0.080 Sum_probs=25.6
Q ss_pred HHHHHHhCCCcccEEEeeCCCCCCCCChHHHHHHHHcCceeEEE
Q 002211 518 FLAAVRLLPYAVPYKFIPYGDGHKNPTYSELINQITTGVFDAAV 561 (953)
Q Consensus 518 l~~la~~l~~~~~~~~~~~~~~~~n~~~~~~i~~l~~g~~Di~~ 561 (953)
++...++.|++ ++++.+ .++......|.+|++|+..
T Consensus 56 ~~~~~~~~G~~--Ve~~~f------~~~~~~~~AL~~G~iD~~~ 91 (295)
T 1p99_A 56 VKELAKKDDID--VEIKHF------SDYNLPNKALNDGDIDMNA 91 (295)
T ss_dssp HHHHHGGGTCC--EEEEEC------SSTTSHHHHHHTTSSSEEE
T ss_pred HHHHHHHcCCe--EEEEEe------CChHHHHHHHHcCCCCEEc
Confidence 34455556966 455555 4478899999999999965
No 280
>3jy6_A Transcriptional regulator, LACI family; NYSGXRC, PSI-II, protein S initiative, structural genomics; 1.97A {Lactobacillus brevis}
Probab=56.46 E-value=34 Score=34.55 Aligned_cols=78 Identities=9% Similarity=-0.028 Sum_probs=58.8
Q ss_pred CcEEEEEEec--CccccchHHHHHHHHHhcCcEEEEEEecCCCCCCChHHHHHHHHHHhcCCceEEEEEcchhhHHHHHH
Q 002211 182 WGEVIAIFND--DDQGRNGVTALGDKLAEIRCKISYKSALPPDQSVTETDVRNELVKVRMMEARVIVVHGYSRTGLMVFD 259 (953)
Q Consensus 182 w~~vaii~~d--~~~g~~~~~~l~~~l~~~g~~v~~~~~~~~~~~~~~~d~~~~l~~i~~~~~~vii~~~~~~~~~~~~~ 259 (953)
-+.|+++..+ +.|.......+.+++++.|..+..... . .+...-...++.+.+.++|.||+..... ...++
T Consensus 7 s~~Igvi~~~~~~~~~~~~~~gi~~~~~~~g~~~~~~~~-~----~~~~~~~~~~~~l~~~~vdgiIi~~~~~--~~~~~ 79 (276)
T 3jy6_A 7 SKLIAVIVANIDDYFSTELFKGISSILESRGYIGVLFDA-N----ADIEREKTLLRAIGSRGFDGLILQSFSN--PQTVQ 79 (276)
T ss_dssp CCEEEEEESCTTSHHHHHHHHHHHHHHHTTTCEEEEEEC-T----TCHHHHHHHHHHHHTTTCSEEEEESSCC--HHHHH
T ss_pred CcEEEEEeCCCCchHHHHHHHHHHHHHHHCCCEEEEEeC-C----CCHHHHHHHHHHHHhCCCCEEEEecCCc--HHHHH
Confidence 3678888864 667888899999999999998875431 1 1245556778888889999999987665 66777
Q ss_pred HHHHcCC
Q 002211 260 VAQRLGM 266 (953)
Q Consensus 260 ~a~~~g~ 266 (953)
.+.+.|+
T Consensus 80 ~l~~~~i 86 (276)
T 3jy6_A 80 EILHQQM 86 (276)
T ss_dssp HHHTTSS
T ss_pred HHHHCCC
Confidence 7877664
No 281
>3r6u_A Choline-binding protein; substrate binding protein, ABC-transporter, extracellular, transport protein; 1.61A {Bacillus subtilis} SCOP: c.94.1.0 PDB: 3ppq_A 3ppo_A* 3ppp_A 3ppn_A 3ppr_A*
Probab=55.92 E-value=53 Score=33.60 Aligned_cols=90 Identities=7% Similarity=0.013 Sum_probs=52.7
Q ss_pred CCCChHHhhhCC--CeEEEEe------CchHHHHHHHhhCCCccceEeCCCHHHHHHHHHcCCcEEEEccchhHHHHHhc
Q 002211 701 PIKGIDTLMTSN--DRVGYQV------GSFAENYLIEELSIPKSRLVALGSPEEYAIALENRTVAAVVDERPYIDLFLSD 772 (953)
Q Consensus 701 ~I~sl~dL~~~~--~~ig~~~------~s~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~g~~~a~~~~~~~~~~~~~~ 772 (953)
.|+|++||.+.. .++|... |.-... +.+.+++....+... +.....+++++|+.+++..-.+...+-.
T Consensus 130 ~l~sisDL~~~~~~~~~g~~~ef~~r~G~G~~~-l~~~YGl~~~~~~~~-~~g~~~~A~~~~~~~v~~~wsp~~~~~~-- 205 (284)
T 3r6u_A 130 HLETVSDVKKWAPQLKLGVDNYWMKLKGNGYQD-FTKTYGMTFGGTYPM-QIGLVYDAVKSGKMDIVLAYSTDGRIKS-- 205 (284)
T ss_dssp TCCBSGGGGGGGGGCEEEECTTGGGCSSSSHHH-HHHHHCCCCSEEEEC-CGGGHHHHHHHTSCSEEEEETTCHHHHH--
T ss_pred CCCCHHHHHhhhhceeeccCcccccCchhHHHH-HHHHcCCCccccccc-CHHHHHHHHHcCCCeEEEEeCCCchhhc--
Confidence 789999998653 3566653 232333 346677653334444 4445678899999988887666544321
Q ss_pred CcceEEeCC---ccccCccEEEecCC
Q 002211 773 HCQFSVRGQ---EFTKSGWGFAFPRD 795 (953)
Q Consensus 773 ~~~l~~~~~---~~~~~~~~~~~~k~ 795 (953)
.++..+.. .|..+....+++++
T Consensus 206 -~dL~~LeD~k~~fp~~~v~~vvr~~ 230 (284)
T 3r6u_A 206 -YGLKMLKDDKQFFPPYDCSPVVPEK 230 (284)
T ss_dssp -TTEEECBCTTCCSCCCBEEEEEEHH
T ss_pred -CCceEcCCCcccCCccceeEEEcHH
Confidence 24555543 33344455566654
No 282
>3d02_A Putative LACI-type transcriptional regulator; periplasmic sugar-binding protein, structura genomics; HET: MSE GOL; 1.30A {Klebsiella pneumoniae subsp}
Probab=55.92 E-value=27 Score=35.85 Aligned_cols=80 Identities=13% Similarity=0.016 Sum_probs=55.5
Q ss_pred cEEEEEEe--cCccccchHHHHHHHHHhcCcEEEEEEecCCCCCCChHHHHHHHHHHhcCCceEEEEEcchh-hHHHHHH
Q 002211 183 GEVIAIFN--DDDQGRNGVTALGDKLAEIRCKISYKSALPPDQSVTETDVRNELVKVRMMEARVIVVHGYSR-TGLMVFD 259 (953)
Q Consensus 183 ~~vaii~~--d~~~g~~~~~~l~~~l~~~g~~v~~~~~~~~~~~~~~~d~~~~l~~i~~~~~~vii~~~~~~-~~~~~~~ 259 (953)
++|+++.. +++|.....+.+.+++++.|.++.... +.. .+.......++++...++|.||+..... .....++
T Consensus 5 ~~Ig~i~~~~~~~~~~~~~~g~~~~~~~~g~~~~~~~--~~~--~~~~~~~~~~~~l~~~~vdgiii~~~~~~~~~~~~~ 80 (303)
T 3d02_A 5 KTVVNISKVDGMPWFNRMGEGVVQAGKEFNLNASQVG--PSS--TDAPQQVKIIEDLIARKVDAITIVPNDANVLEPVFK 80 (303)
T ss_dssp EEEEEECSCSSCHHHHHHHHHHHHHHHHTTEEEEEEC--CSS--SCHHHHHHHHHHHHHTTCSEEEECCSCHHHHHHHHH
T ss_pred eEEEEEeccCCChHHHHHHHHHHHHHHHcCCEEEEEC--CCC--CCHHHHHHHHHHHHHcCCCEEEEecCChHHHHHHHH
Confidence 46788864 467888889999999999998875321 112 2244556677888888999999876543 3345677
Q ss_pred HHHHcCC
Q 002211 260 VAQRLGM 266 (953)
Q Consensus 260 ~a~~~g~ 266 (953)
++.+.|.
T Consensus 81 ~~~~~~i 87 (303)
T 3d02_A 81 KARDAGI 87 (303)
T ss_dssp HHHHTTC
T ss_pred HHHHCCC
Confidence 7777664
No 283
>1tjy_A Sugar transport protein; protein-ligand complex, signaling protein; HET: PAV; 1.30A {Salmonella typhimurium} SCOP: c.93.1.1 PDB: 1tm2_A 3t95_A* 3ejw_A*
Probab=55.69 E-value=17 Score=37.82 Aligned_cols=80 Identities=11% Similarity=0.056 Sum_probs=56.2
Q ss_pred cEEEEEEe--cCccccchHHHHHHHHHhcCcEEEEEEecCCCCCCChHHHHHHHHHHhcCCceEEEEEcch-hhHHHHHH
Q 002211 183 GEVIAIFN--DDDQGRNGVTALGDKLAEIRCKISYKSALPPDQSVTETDVRNELVKVRMMEARVIVVHGYS-RTGLMVFD 259 (953)
Q Consensus 183 ~~vaii~~--d~~~g~~~~~~l~~~l~~~g~~v~~~~~~~~~~~~~~~d~~~~l~~i~~~~~~vii~~~~~-~~~~~~~~ 259 (953)
++|+++.. +++|.....+.+.+++++.|.++.... +.. .+...-...++.+.+.++|.||+.... ......++
T Consensus 4 ~~Igvi~~~~~~~~~~~~~~g~~~~~~~~g~~~~~~~--~~~--~d~~~q~~~i~~li~~~vdgiii~~~~~~~~~~~~~ 79 (316)
T 1tjy_A 4 ERIAFIPKLVGVGFFTSGGNGAQEAGKALGIDVTYDG--PTE--PSVSGQVQLVNNFVNQGYDAIIVSAVSPDGLCPALK 79 (316)
T ss_dssp CEEEEECSSSSSHHHHHHHHHHHHHHHHHTCEEEECC--CSS--CCHHHHHHHHHHHHHTTCSEEEECCSSSSTTHHHHH
T ss_pred CEEEEEeCCCCChHHHHHHHHHHHHHHHhCCEEEEEC--CCC--CCHHHHHHHHHHHHHcCCCEEEEeCCCHHHHHHHHH
Confidence 57888874 466777888999999999998876421 222 234455567788888899999987554 33356778
Q ss_pred HHHHcCC
Q 002211 260 VAQRLGM 266 (953)
Q Consensus 260 ~a~~~g~ 266 (953)
++.+.|.
T Consensus 80 ~a~~~gi 86 (316)
T 1tjy_A 80 RAMQRGV 86 (316)
T ss_dssp HHHHTTC
T ss_pred HHHHCcC
Confidence 8888774
No 284
>2vd3_A ATP phosphoribosyltransferase; metal-binding, glycosyltransferase, HISG, histidine, magnesi transferase; HET: HIS; 2.45A {Methanobacterium thermoautotrophicum}
Probab=55.61 E-value=19 Score=36.72 Aligned_cols=102 Identities=17% Similarity=0.140 Sum_probs=62.4
Q ss_pred CCCChHHhhhCCCeEEEEeCchHHHHHHHhhCCCccceEeCCCHHHHHHHHHcCCcEEEEccchhHHHHHhcCcceEEeC
Q 002211 701 PIKGIDTLMTSNDRVGYQVGSFAENYLIEELSIPKSRLVALGSPEEYAIALENRTVAAVVDERPYIDLFLSDHCQFSVRG 780 (953)
Q Consensus 701 ~I~sl~dL~~~~~~ig~~~~s~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~g~~~a~~~~~~~~~~~~~~~~~l~~~~ 780 (953)
.+++++||. .+++|+...-...++||. +.+.+ .+++.....-|.. ..-|-.|++++-......+.++ +|.+++
T Consensus 105 ~~~~~~~l~-~~~RIATkyp~l~~~yf~-~~gi~-~~ii~l~GsvE~a--p~~GlADaIvDivsTG~TLraN--gL~~ie 177 (289)
T 2vd3_A 105 TIRGPEDIP-RGAVIATEFPGITENYLR-EHGID-AEVVELTGSTEIA--PFIGVADLITDLSSTGTTLRMN--HLRVID 177 (289)
T ss_dssp SCCSGGGCC-TTCEEEESCHHHHHHHHH-HTTCC-CEEEECSSCGGGT--TTTTSCSEEEEEESSTHHHHHT--TEEEEE
T ss_pred CCCCHHHhc-CCCEEEeCcHHHHHHHHH-HcCCc-EEEEECCCceeec--cCCCcccEEEEEeCChHHHHHC--CCEEeE
Confidence 456778882 278999988888999995 45554 3555444333322 3348889999877776665443 566665
Q ss_pred CccccCccEEEecCCC-cc-hHHHHHHHHhhh
Q 002211 781 QEFTKSGWGFAFPRDS-PL-AIDMSTAILTLS 810 (953)
Q Consensus 781 ~~~~~~~~~~~~~k~s-pl-~~~~n~~i~~l~ 810 (953)
..+ ...-.++.++.+ +. .+.++..+.++.
T Consensus 178 ~I~-~ssA~LI~n~~s~~~k~~~i~~l~~rl~ 208 (289)
T 2vd3_A 178 TIL-ESSVKLIANRESYATKSGIIEELRTGIR 208 (289)
T ss_dssp EEE-EECEEEEECHHHHHHSHHHHHHHHHHHH
T ss_pred EEE-eeEEEEEEccchhhhHHHHHHHHHHHHH
Confidence 444 334456666665 22 245555555554
No 285
>3uug_A Multiple sugar-binding periplasmic receptor CHVE; periplasmic binding protein, sugar-binding protein, sugar binding protein; HET: BDP; 1.75A {Agrobacterium tumefaciens} PDB: 3urm_A*
Probab=54.93 E-value=31 Score=35.96 Aligned_cols=79 Identities=14% Similarity=0.102 Sum_probs=58.8
Q ss_pred cEEEEEEec--CccccchHHHHHHHHHhcCcEEEEEEecCCCCCCChHHHHHHHHHHhcCCceEEEEEcch-hhHHHHHH
Q 002211 183 GEVIAIFND--DDQGRNGVTALGDKLAEIRCKISYKSALPPDQSVTETDVRNELVKVRMMEARVIVVHGYS-RTGLMVFD 259 (953)
Q Consensus 183 ~~vaii~~d--~~~g~~~~~~l~~~l~~~g~~v~~~~~~~~~~~~~~~d~~~~l~~i~~~~~~vii~~~~~-~~~~~~~~ 259 (953)
++|+++..+ ++|.......+.+++++.|..+.... .. .+...-...++.+.+.++|.||+.... ......++
T Consensus 4 ~~Igvi~~~~~~~~~~~~~~gi~~~a~~~g~~~~~~~--~~---~~~~~~~~~i~~~~~~~vdgiIi~~~~~~~~~~~~~ 78 (330)
T 3uug_A 4 GSVGIAMPTKSSARWIDDGNNIVKQLQEAGYKTDLQY--AD---DDIPNQLSQIENMVTKGVKVLVIASIDGTTLSDVLK 78 (330)
T ss_dssp CEEEEEECCSSSTHHHHHHHHHHHHHHHTTCEEEEEE--CT---TCHHHHHHHHHHHHHHTCSEEEECCSSGGGGHHHHH
T ss_pred cEEEEEeCCCcchHHHHHHHHHHHHHHHcCCEEEEee--CC---CCHHHHHHHHHHHHHcCCCEEEEEcCCchhHHHHHH
Confidence 578888864 67888889999999999999877543 11 224555667788877899999987654 34566788
Q ss_pred HHHHcCC
Q 002211 260 VAQRLGM 266 (953)
Q Consensus 260 ~a~~~g~ 266 (953)
++.+.|+
T Consensus 79 ~~~~~gi 85 (330)
T 3uug_A 79 QAGEQGI 85 (330)
T ss_dssp HHHHTTC
T ss_pred HHHHCCC
Confidence 8888775
No 286
>3jzd_A Iron-containing alcohol dehydrogenase; YP_298327.1, putative alcohol dehedrogenase, structural GENO joint center for structural genomics; HET: MSE NAD PG4 P6G PGE; 2.10A {Ralstonia eutropha}
Probab=54.65 E-value=15 Score=39.23 Aligned_cols=97 Identities=20% Similarity=0.217 Sum_probs=64.6
Q ss_pred HHHHHHHHHcCCcEEEEEEecCccccchHHHHHHHHHhcCcEEEEEEecCCCCCCChHHHHHHHHHHhcCCceEEEEEcc
Q 002211 171 SAIAEMVSYFGWGEVIAIFNDDDQGRNGVTALGDKLAEIRCKISYKSALPPDQSVTETDVRNELVKVRMMEARVIVVHGY 250 (953)
Q Consensus 171 ~ai~~~l~~~~w~~vaii~~d~~~g~~~~~~l~~~l~~~g~~v~~~~~~~~~~~~~~~d~~~~l~~i~~~~~~vii~~~~ 250 (953)
..+.++++.+|.+++.+|+....+ +..+.+.+.|++.+..+ + ....++ .+.+.+...++.+++.++|+||-.+.
T Consensus 25 ~~l~~~l~~~g~~r~liVtd~~~~--~~~~~v~~~L~~~~~~~-f-~~v~~~--p~~~~v~~~~~~~~~~~~D~IIavGG 98 (358)
T 3jzd_A 25 SQVAAEVERLGAKRALVLCTPNQQ--AEAERIADLLGPLSAGV-Y-AGAVMH--VPIESARDATARAREAGADCAVAVGG 98 (358)
T ss_dssp GGHHHHHHHTTCSCEEEECCGGGH--HHHHHHHHHHGGGEEEE-E-CCCCTT--CBHHHHHHHHHHHHHHTCSEEEEEES
T ss_pred HHHHHHHHHhCCCeEEEEeCCcHH--HHHHHHHHHhccCCEEE-e-cCCcCC--CCHHHHHHHHHHhhccCCCEEEEeCC
Confidence 346778889999999999865543 35677888888765432 2 223333 34677888888888899999998876
Q ss_pred h--hhHHHHHHHHHHcCCCCCceEEEEeCc
Q 002211 251 S--RTGLMVFDVAQRLGMMDSGYVWIATTW 278 (953)
Q Consensus 251 ~--~~~~~~~~~a~~~g~~~~~~~wi~~~~ 278 (953)
+ -|+.+++... .+ ..++-|.|..
T Consensus 99 GsviD~aK~iA~~--~~---~p~i~IPTT~ 123 (358)
T 3jzd_A 99 GSTTGLGKAIALE--TG---MPIVAIPTTY 123 (358)
T ss_dssp HHHHHHHHHHHHH--HC---CCEEEEECSS
T ss_pred cHHHHHHHHHHhc--cC---CCEEEEeCCc
Confidence 5 4555555442 23 3456666654
No 287
>3s81_A Putative aspartate racemase; structural genomics, center for structural genomics of infec diseases, csgid, alpha beta fold, cytosol; 1.80A {Salmonella enterica subsp} PDB: 3s7z_A
Probab=54.41 E-value=57 Score=33.05 Aligned_cols=39 Identities=15% Similarity=0.077 Sum_probs=29.8
Q ss_pred HHHHHHHHhcCcEEEEccCChhhHHHHHHhhhhCCCcEEE
Q 002211 104 IMGALQFMETDTLAIVGPQSAVMAHVLSHLANELQVPLLS 143 (953)
Q Consensus 104 ~~~a~~li~~~v~aiiGp~~S~~a~av~~v~~~~~vP~Is 143 (953)
.+.+..|.+.++.+|+=+..+..+ ++..+-+..++|+|.
T Consensus 89 ~~~~~~L~~~Gad~IVIaCNTah~-~l~~lr~~~~iPvig 127 (268)
T 3s81_A 89 ERYLHMLEDAGAECIVIPCNTAHY-WFDDLQNVAKARMIS 127 (268)
T ss_dssp HHHHHHHHHTTCSEEECSCSGGGG-GHHHHHHHCSSEEEC
T ss_pred HHHHHHHHHcCCCEEEEeCCCHHH-HHHHHHHHCCCCEEc
Confidence 445566666799999998887655 666777788999996
No 288
>3tb6_A Arabinose metabolism transcriptional repressor; transcription regulation, arabinose binding, DNA binding Pro; HET: ARB; 2.21A {Bacillus subtilis}
Probab=52.78 E-value=37 Score=34.56 Aligned_cols=79 Identities=10% Similarity=0.032 Sum_probs=59.0
Q ss_pred cEEEEEEec--CccccchHHHHHHHHHhcCcEEEEEEecCCCCCCChHHHHHHHHHHhcCCceEEEEEcchh----hHHH
Q 002211 183 GEVIAIFND--DDQGRNGVTALGDKLAEIRCKISYKSALPPDQSVTETDVRNELVKVRMMEARVIVVHGYSR----TGLM 256 (953)
Q Consensus 183 ~~vaii~~d--~~~g~~~~~~l~~~l~~~g~~v~~~~~~~~~~~~~~~d~~~~l~~i~~~~~~vii~~~~~~----~~~~ 256 (953)
+.|+++..+ +.|.....+.+.+++++.|..+.....- .+...-...++.+.+.+.|.||+..... ....
T Consensus 16 ~~Igvi~~~~~~~~~~~~~~gi~~~a~~~g~~~~~~~~~-----~~~~~~~~~~~~l~~~~vdgiIi~~~~~~~~~~~~~ 90 (298)
T 3tb6_A 16 KTIGVLTTYISDYIFPSIIRGIESYLSEQGYSMLLTSTN-----NNPDNERRGLENLLSQHIDGLIVEPTKSALQTPNIG 90 (298)
T ss_dssp CEEEEEESCSSSTTHHHHHHHHHHHHHHTTCEEEEEECT-----TCHHHHHHHHHHHHHTCCSEEEECCSSTTSCCTTHH
T ss_pred ceEEEEeCCCCchHHHHHHHHHHHHHHHCCCEEEEEeCC-----CChHHHHHHHHHHHHCCCCEEEEecccccccCCcHH
Confidence 789999864 6688889999999999999988764321 1245556778888889999999976532 3446
Q ss_pred HHHHHHHcCC
Q 002211 257 VFDVAQRLGM 266 (953)
Q Consensus 257 ~~~~a~~~g~ 266 (953)
.++++.+.|+
T Consensus 91 ~~~~~~~~~i 100 (298)
T 3tb6_A 91 YYLNLEKNGI 100 (298)
T ss_dssp HHHHHHHTTC
T ss_pred HHHHHHhcCC
Confidence 7778888775
No 289
>3o74_A Fructose transport system repressor FRUR; dual transcriptional regulator, DNA, transcription; 2.00A {Pseudomonas putida} PDB: 3o75_A*
Probab=52.06 E-value=22 Score=35.83 Aligned_cols=79 Identities=11% Similarity=-0.004 Sum_probs=57.5
Q ss_pred cEEEEEEec--CccccchHHHHHHHHHhcCcEEEEEEecCCCCCCChHHHHHHHHHHhcCCceEEEEEcchhhHHHHHHH
Q 002211 183 GEVIAIFND--DDQGRNGVTALGDKLAEIRCKISYKSALPPDQSVTETDVRNELVKVRMMEARVIVVHGYSRTGLMVFDV 260 (953)
Q Consensus 183 ~~vaii~~d--~~~g~~~~~~l~~~l~~~g~~v~~~~~~~~~~~~~~~d~~~~l~~i~~~~~~vii~~~~~~~~~~~~~~ 260 (953)
+.|+++..+ ++|.....+.+.+++++.|..+..... . .+...-...++.+.+.++|.||+..........+++
T Consensus 3 ~~Igvi~~~~~~~~~~~~~~gi~~~a~~~g~~~~~~~~-~----~~~~~~~~~~~~l~~~~vdgiIi~~~~~~~~~~~~~ 77 (272)
T 3o74_A 3 RTLGFILPDLENPSYARIAKQLEQGARARGYQLLIASS-D----DQPDSERQLQQLFRARRCDALFVASCLPPEDDSYRE 77 (272)
T ss_dssp CEEEEEESCTTCHHHHHHHHHHHHHHHHTTCEEEEEEC-T----TCHHHHHHHHHHHHHTTCSEEEECCCCCSSCCHHHH
T ss_pred eEEEEEeCCCcChhHHHHHHHHHHHHHHCCCEEEEEeC-C----CCHHHHHHHHHHHHHcCCCEEEEecCccccHHHHHH
Confidence 578888864 667888899999999999998875432 1 224556677888888999999987654223456677
Q ss_pred HHHcCC
Q 002211 261 AQRLGM 266 (953)
Q Consensus 261 a~~~g~ 266 (953)
+.+.|+
T Consensus 78 ~~~~~i 83 (272)
T 3o74_A 78 LQDKGL 83 (272)
T ss_dssp HHHTTC
T ss_pred HHHcCC
Confidence 777765
No 290
>3iwt_A 178AA long hypothetical molybdenum cofactor biosy protein B; biosynthesis, structural genomics, UNKN function, NPPSFA; HET: PEG; 1.90A {Sulfolobus tokodaii}
Probab=52.00 E-value=37 Score=31.91 Aligned_cols=63 Identities=19% Similarity=0.150 Sum_probs=45.6
Q ss_pred EEEEEEecCcc-------c---cchHHHHHHHHHhcCcEEEEEEecCCCCCCChHHHHHHHHHHhc-CCceEEEEEcc
Q 002211 184 EVIAIFNDDDQ-------G---RNGVTALGDKLAEIRCKISYKSALPPDQSVTETDVRNELVKVRM-MEARVIVVHGY 250 (953)
Q Consensus 184 ~vaii~~d~~~-------g---~~~~~~l~~~l~~~g~~v~~~~~~~~~~~~~~~d~~~~l~~i~~-~~~~vii~~~~ 250 (953)
+|+||...|.- | ......+.+.|++.|++|.....++.+ .+.+...+.+..+ .++|+||..+.
T Consensus 17 ~v~iitvsd~~~~~~~~~g~i~D~ng~~L~~~L~~~G~~v~~~~iV~Dd----~~~i~~al~~~~a~~~~DlVittGG 90 (178)
T 3iwt_A 17 NFYVITISTSRYEKLLKKEPIVDESGDIIKQLLIENGHKIIGYSLVPDD----KIKILKAFTDALSIDEVDVIISTGG 90 (178)
T ss_dssp EEEEEEECHHHHHHHHTTCCCCCHHHHHHHHHHHHTTCEEEEEEEECSC----HHHHHHHHHHHHTCTTCCEEEEESC
T ss_pred EEEEEEEcCCCccccccCCCCCcchHHHHHHHHHHCCCEEEEEEEeCCC----HHHHHHHHHHHHhcCCCCEEEecCC
Confidence 68888754311 1 123467889999999999988888866 7778777776654 57899998764
No 291
>3sya_A G protein-activated inward rectifier potassium CH; ION channel, potassium channel, inward rectification, sodium PIP2 binding, G protein binding; HET: PIO; 2.98A {Mus musculus} PDB: 3syo_A 3syc_A 3syp_A 3syq_A*
Probab=51.90 E-value=17 Score=38.18 Aligned_cols=59 Identities=14% Similarity=0.118 Sum_probs=50.2
Q ss_pred ccchhhHHHHHHHhhccccC--Ccc--cchhHHHHHHHHHHHHHhhhhcccceeeeeeecccc
Q 002211 641 KQIVTVLWFSFSTMFFAHRE--NTV--STLGRVVLIIWLFVVLIITSSYTASLTSILTVQQLS 699 (953)
Q Consensus 641 ~~~~~~~~~~~~~l~~~~~~--~~~--s~~~R~l~~~w~~~~lil~~~Yta~L~s~Lt~~~~~ 699 (953)
..+..++||++.++...|.. .|. ++.+|++..+-.++++++.+.-++-+.+-++.++..
T Consensus 90 ~sf~~af~fSv~T~TTvGYGd~~p~~~~~~g~~l~~~~~l~G~~l~a~~~giv~ak~srp~~r 152 (340)
T 3sya_A 90 NGFVSAFLFSIETETTIGYGYRVITDKCPEGIILLLIQSVLGSIVNAFMVGCMFVKISQPKKR 152 (340)
T ss_dssp CSTTHHHHHHHHHHSCCCCSSSCBCTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCGGGG
T ss_pred cCHHHHHhhhheeeeeecCCCccCcCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHhhc
Confidence 45789999999999988755 454 678999999999999999999999998888877644
No 292
>3l6u_A ABC-type sugar transport system periplasmic compo; structural genomics, nysgrc, target 11006S, PSI-2, protein S initiative; 1.90A {Exiguobacterium sibiricum}
Probab=51.74 E-value=30 Score=35.26 Aligned_cols=81 Identities=7% Similarity=0.065 Sum_probs=58.7
Q ss_pred CCcEEEEEEec--CccccchHHHHHHHHHhcCcEEEEEEecCCCCCCChHHHHHHHHHHhcCCceEEEEEcch-hhHHHH
Q 002211 181 GWGEVIAIFND--DDQGRNGVTALGDKLAEIRCKISYKSALPPDQSVTETDVRNELVKVRMMEARVIVVHGYS-RTGLMV 257 (953)
Q Consensus 181 ~w~~vaii~~d--~~~g~~~~~~l~~~l~~~g~~v~~~~~~~~~~~~~~~d~~~~l~~i~~~~~~vii~~~~~-~~~~~~ 257 (953)
.-++|+++..+ ++|.......+.+++++.|..+..... . .+.......++.+.+.++|.||+.... ......
T Consensus 7 ~~~~Ig~i~~~~~~~~~~~~~~gi~~~a~~~g~~~~~~~~-~----~~~~~~~~~~~~l~~~~vdgiI~~~~~~~~~~~~ 81 (293)
T 3l6u_A 7 KRNIVGFTIVNDKHEFAQRLINAFKAEAKANKYEALVATS-Q----NSRISEREQILEFVHLKVDAIFITTLDDVYIGSA 81 (293)
T ss_dssp --CEEEEEESCSCSHHHHHHHHHHHHHHHHTTCEEEEEEC-S----SCHHHHHHHHHHHHHTTCSEEEEECSCTTTTHHH
T ss_pred CCcEEEEEEecCCcHHHHHHHHHHHHHHHHcCCEEEEECC-C----CCHHHHHHHHHHHHHcCCCEEEEecCChHHHHHH
Confidence 34678888854 667788899999999999998876432 1 225556677888888999999997654 333467
Q ss_pred HHHHHHcCC
Q 002211 258 FDVAQRLGM 266 (953)
Q Consensus 258 ~~~a~~~g~ 266 (953)
++++.+.|+
T Consensus 82 ~~~~~~~~i 90 (293)
T 3l6u_A 82 IEEAKKAGI 90 (293)
T ss_dssp HHHHHHTTC
T ss_pred HHHHHHcCC
Confidence 788888775
No 293
>1oj7_A Hypothetical oxidoreductase YQHD; structural genomics; HET: NZQ; 2.0A {Escherichia coli} SCOP: e.22.1.2
Probab=51.55 E-value=42 Score=36.52 Aligned_cols=83 Identities=13% Similarity=0.186 Sum_probs=55.9
Q ss_pred HHHHHHHcCCcEEEEEEecCcccc-chHHHHHHHHHhcCcEEEEEEecCCCCCCChHHHHHHHHHHhcCCceEEEEEcch
Q 002211 173 IAEMVSYFGWGEVIAIFNDDDQGR-NGVTALGDKLAEIRCKISYKSALPPDQSVTETDVRNELVKVRMMEARVIVVHGYS 251 (953)
Q Consensus 173 i~~~l~~~~w~~vaii~~d~~~g~-~~~~~l~~~l~~~g~~v~~~~~~~~~~~~~~~d~~~~l~~i~~~~~~vii~~~~~ 251 (953)
+.++++ +| +++.+|+.+..... +..+.+.+.|+ |+++.......++ .+.+.+...++.+++.++|+||-.+.+
T Consensus 43 l~~~l~-~g-~r~liVtd~~~~~~~g~~~~v~~~L~--g~~~~~f~~v~~~--p~~~~v~~~~~~~~~~~~D~IIavGGG 116 (408)
T 1oj7_A 43 LREQIP-HD-ARVLITYGGGSVKKTGVLDQVLDALK--GMDVLEFGGIEPN--PAYETLMNAVKLVREQKVTFLLAVGGG 116 (408)
T ss_dssp HHHHSC-TT-CEEEEEECSSHHHHHSHHHHHHHHTT--TSEEEEECCCCSS--CBHHHHHHHHHHHHHHTCCEEEEEESH
T ss_pred HHHHHh-cC-CEEEEEECCchhhhccHHHHHHHHhC--CCEEEEeCCcCCC--cCHHHHHHHHHHHHHcCCCEEEEeCCc
Confidence 455566 67 89999985543333 35677777776 7765433333333 457788888888999999999977654
Q ss_pred --hhHHHHHHHH
Q 002211 252 --RTGLMVFDVA 261 (953)
Q Consensus 252 --~~~~~~~~~a 261 (953)
-|+.+++...
T Consensus 117 sviD~AK~iA~~ 128 (408)
T 1oj7_A 117 SVLDGTKFIAAA 128 (408)
T ss_dssp HHHHHHHHHHHH
T ss_pred hHHHHHHHHHHH
Confidence 5666666554
No 294
>3rot_A ABC sugar transporter, periplasmic sugar binding; nysgrc, PSI-biology, structural genomics; 1.91A {Legionella pneumophila subsp}
Probab=51.28 E-value=25 Score=36.06 Aligned_cols=81 Identities=9% Similarity=-0.041 Sum_probs=58.5
Q ss_pred cEEEEEEec--CccccchHHHHHHHHHhcCcEEEEEEecCCCCCCChHHHHHHHHHHhcCCceEEEEEcch-hhHHHHHH
Q 002211 183 GEVIAIFND--DDQGRNGVTALGDKLAEIRCKISYKSALPPDQSVTETDVRNELVKVRMMEARVIVVHGYS-RTGLMVFD 259 (953)
Q Consensus 183 ~~vaii~~d--~~~g~~~~~~l~~~l~~~g~~v~~~~~~~~~~~~~~~d~~~~l~~i~~~~~~vii~~~~~-~~~~~~~~ 259 (953)
.+++++..+ ++|.......+.+++++.|..+.....-... +...-...++++.+.++|.||+.... ......++
T Consensus 4 ~~Igvi~~~~~~~~~~~~~~gi~~~a~~~g~~~~~~~~~~~~---~~~~~~~~i~~l~~~~vdgiii~~~~~~~~~~~~~ 80 (297)
T 3rot_A 4 DKYYLITHGSQDPYWTSLFQGAKKAAEELKVDLQILAPPGAN---DVPKQVQFIESALATYPSGIATTIPSDTAFSKSLQ 80 (297)
T ss_dssp CEEEEECSCCCSHHHHHHHHHHHHHHHHHTCEEEEECCSSSC---CHHHHHHHHHHHHHTCCSEEEECCCCSSTTHHHHH
T ss_pred EEEEEEecCCCCchHHHHHHHHHHHHHHhCcEEEEECCCCcC---CHHHHHHHHHHHHHcCCCEEEEeCCCHHHHHHHHH
Confidence 467888754 6788888999999999999998764311111 25556677888888999999986543 43466788
Q ss_pred HHHHcCC
Q 002211 260 VAQRLGM 266 (953)
Q Consensus 260 ~a~~~g~ 266 (953)
++.+.|+
T Consensus 81 ~~~~~gi 87 (297)
T 3rot_A 81 RANKLNI 87 (297)
T ss_dssp HHHHHTC
T ss_pred HHHHCCC
Confidence 8888775
No 295
>1ccw_A Protein (glutamate mutase); coenzyme B12, radical reaction, TIM-barrel rossman-fold, isomerase; HET: CNC TAR; 1.60A {Clostridium cochlearium} SCOP: c.23.6.1 PDB: 1cb7_A* 1b1a_A 1i9c_A* 1be1_A 1fmf_A 1id8_A*
Probab=50.99 E-value=75 Score=28.27 Aligned_cols=85 Identities=11% Similarity=0.079 Sum_probs=54.4
Q ss_pred EEEEEEecCccccchHHHHHHHHHhcCcEEEEEEecCCCCCCChHHHHHHHHHHhcCCceEEEEEcch----hhHHHHHH
Q 002211 184 EVIAIFNDDDQGRNGVTALGDKLAEIRCKISYKSALPPDQSVTETDVRNELVKVRMMEARVIVVHGYS----RTGLMVFD 259 (953)
Q Consensus 184 ~vaii~~d~~~g~~~~~~l~~~l~~~g~~v~~~~~~~~~~~~~~~d~~~~l~~i~~~~~~vii~~~~~----~~~~~~~~ 259 (953)
+|.+.....+.-.-+..-+...|+..|.+|.+--...+ . ...+..+++.++|+|.+++.. .....+++
T Consensus 5 ~vvla~~~~d~HdiG~~~v~~~l~~~G~~Vi~lG~~~p-----~---e~~v~~a~~~~~d~v~lS~~~~~~~~~~~~~i~ 76 (137)
T 1ccw_A 5 TIVLGVIGSDCHAVGNKILDHAFTNAGFNVVNIGVLSP-----Q---ELFIKAAIETKADAILVSSLYGQGEIDCKGLRQ 76 (137)
T ss_dssp EEEEEEETTCCCCHHHHHHHHHHHHTTCEEEEEEEEEC-----H---HHHHHHHHHHTCSEEEEEECSSTHHHHHTTHHH
T ss_pred EEEEEeCCCchhHHHHHHHHHHHHHCCCEEEECCCCCC-----H---HHHHHHHHhcCCCEEEEEecCcCcHHHHHHHHH
Confidence 55555555543334566777888999999986543221 2 345666677789999998754 33556777
Q ss_pred HHHHcCCCCCceEEEEeC
Q 002211 260 VAQRLGMMDSGYVWIATT 277 (953)
Q Consensus 260 ~a~~~g~~~~~~~wi~~~ 277 (953)
+.++.|.. .-.+|+++.
T Consensus 77 ~l~~~g~~-~i~v~vGG~ 93 (137)
T 1ccw_A 77 KCDEAGLE-GILLYVGGN 93 (137)
T ss_dssp HHHHTTCT-TCEEEEEES
T ss_pred HHHhcCCC-CCEEEEECC
Confidence 88887763 234555543
No 296
>3uhf_A Glutamate racemase; structural genomics, center for structural genomics of infec diseases, csgid, alpha-beta sandwich fold, isomerase; HET: DGL; 1.83A {Campylobacter jejuni} PDB: 3uho_A* 3uhp_A
Probab=50.83 E-value=1e+02 Score=31.26 Aligned_cols=103 Identities=12% Similarity=-0.028 Sum_probs=60.6
Q ss_pred CCCcEEEEEEecCC------CChHHHHH----HHHHHHhcCcEEEEccCChhhHHHHHHhhhhCCCcEEEeecCCCCCCC
Q 002211 84 LGGRKLSITMHDAK------FNGFLSIM----GALQFMETDTLAIVGPQSAVMAHVLSHLANELQVPLLSFTALDPTLSP 153 (953)
Q Consensus 84 l~g~~l~l~~~D~~------~~~~~a~~----~a~~li~~~v~aiiGp~~S~~a~av~~v~~~~~vP~Is~~at~~~ls~ 153 (953)
||+..+.+ +.|+. .+.....+ .+..|.+.++.+|+=+..+..+.++..+-+..++|+|..
T Consensus 47 lP~e~~iy-~~D~a~~PYG~ks~e~i~~~~~~~~~~L~~~g~d~IVIACNTa~~~al~~lr~~~~iPvigi--------- 116 (274)
T 3uhf_A 47 RLFDEIIY-YGDTARVPYGVKDKDTIIKFCLEALDFFEQFQIDMLIIACNTASAYALDALRAKAHFPVYGV--------- 116 (274)
T ss_dssp TCCSEEEE-EECTTTCCCTTSCHHHHHHHHHHHHHHHTTSCCSEEEECCHHHHHHSHHHHHHHCSSCEECS---------
T ss_pred CCCCCEEE-EecCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCEEEEeCCChhHHHHHHHHHhcCCCEEcC---------
Confidence 36666654 56753 24444333 333444459999999888777777778888889999952
Q ss_pred CCCCcEEEccCChHHHHHHHHHHH-HH--cCCcEEEEEEecCccccchHHHHHHHHHhcCcEEEE
Q 002211 154 LQYPFFVQTAPNDLYLMSAIAEMV-SY--FGWGEVIAIFNDDDQGRNGVTALGDKLAEIRCKISY 215 (953)
Q Consensus 154 ~~~p~~fr~~p~d~~~~~ai~~~l-~~--~~w~~vaii~~d~~~g~~~~~~l~~~l~~~g~~v~~ 215 (953)
.++.++.+ +. -+-++|+++..... -....+++.+.+.|.+.+.
T Consensus 117 ----------------iepa~~~a~~~~~t~~~~IGVLaT~~T---i~s~~Y~~~l~~~~~~~V~ 162 (274)
T 3uhf_A 117 ----------------IDAGVEATIKALHDKNKEILVIATKAT---IKSEEYQKRLLSQGYTNIN 162 (274)
T ss_dssp ----------------HHHHHHHHHHHHCCTTSCEEEEECHHH---HHHTHHHHHHHTTTCCCEE
T ss_pred ----------------CHHHHHHHHHhcccCCCeEEEEecccc---ccHHHHHHHHHHcCCceEE
Confidence 12222322 22 25678888875532 1122456666666654443
No 297
>3k9c_A Transcriptional regulator, LACI family protein; PSI-II, 11026W, structural genomics, PR structure initiative; 2.14A {Rhodococcus jostii}
Probab=50.76 E-value=1.2e+02 Score=30.66 Aligned_cols=117 Identities=13% Similarity=0.087 Sum_probs=72.9
Q ss_pred EEeEEEecCCCchhHHHHHHHHHHHHHhcCCCCCCCcEEEEEEecCCCChHHHHHHHHHHHhc--CcEEEEccCChhhHH
Q 002211 51 NVGAIFSFGTVNGQVSRIAMKAAQDDINSDPRVLGGRKLSITMHDAKFNGFLSIMGALQFMET--DTLAIVGPQSAVMAH 128 (953)
Q Consensus 51 ~IG~l~~~~~~~g~~~~~a~~lAve~iN~~g~il~g~~l~l~~~D~~~~~~~a~~~a~~li~~--~v~aiiGp~~S~~a~ 128 (953)
+||++..........-..|++-|+++.+ + ..... +.....+...+.+.+.+++.. ++.||+.. +...+.
T Consensus 128 ~I~~i~~~~~~~~~~R~~Gf~~al~~~g----~--~~~~~--~~~~~~~~~~~~~~~~~~l~~~~~~~ai~~~-~d~~A~ 198 (289)
T 3k9c_A 128 NIAHIDGADAPGGADRRAGFLAAMDRHG----L--SASAT--VVTGGTTETEGAEGMHTLLEMPTPPTAVVAF-NDRCAT 198 (289)
T ss_dssp SEEEECCTTSTTHHHHHHHHHHHHHHTT----C--GGGEE--EECCCSSHHHHHHHHHHHHTSSSCCSEEEES-SHHHHH
T ss_pred cEEEEeCCCCccHHHHHHHHHHHHHHCC----C--CCCcc--EEECCCCHHHHHHHHHHHHcCCCCCCEEEEC-ChHHHH
Confidence 5777765543344556788888887742 2 11222 334556788888889999875 78999985 445566
Q ss_pred HHHHhhhhCC------CcEEEeecCCCCCCCCCCCcEEEccCChHHHHHHHHHHHH
Q 002211 129 VLSHLANELQ------VPLLSFTALDPTLSPLQYPFFVQTAPNDLYLMSAIAEMVS 178 (953)
Q Consensus 129 av~~v~~~~~------vP~Is~~at~~~ls~~~~p~~fr~~p~d~~~~~ai~~~l~ 178 (953)
.+...+.+.+ |.++++.... +.....|-+-.+..+...++...++++.
T Consensus 199 g~~~al~~~g~~vP~di~vig~D~~~--~~~~~~p~lttv~~~~~~~g~~a~~~l~ 252 (289)
T 3k9c_A 199 GVLDLLVRSGRDVPADISVVGYDDSR--LARIPHVQMTTISQDATHMAEAAVDGAL 252 (289)
T ss_dssp HHHHHHHHTTCCTTTTCEEEEEECCT--TTTCTTTCCEEEECCHHHHHHHHHHHHH
T ss_pred HHHHHHHHcCCCCCCceEEEEECCHH--HHhcCCCCcceEecCHHHHHHHHHHHHH
Confidence 6666666654 3377776542 3332234455566677777877777753
No 298
>3lr1_A Tungstate ABC transporter, periplasmic tungstate- binding protein; the tungstate ABC transporter, structural genomics, PSI, MCSG; 1.80A {Geobacter sulfurreducens}
Probab=50.68 E-value=9.9 Score=37.91 Aligned_cols=75 Identities=9% Similarity=0.003 Sum_probs=52.2
Q ss_pred EEeeHHHHHHHHHhCCCcccEEEeeCCCCCCCCChHHHHHHHHcCceeEEEecEEEecCcc---ceeeccccceecceEE
Q 002211 511 HGYCIDVFLAAVRLLPYAVPYKFIPYGDGHKNPTYSELINQITTGVFDAAVGDIAIVTNRT---KAVDFTQPYIESGLVV 587 (953)
Q Consensus 511 ~G~~~dll~~la~~l~~~~~~~~~~~~~~~~n~~~~~~i~~l~~g~~Di~~~~~~~t~~r~---~~vdft~p~~~~~~~~ 587 (953)
.|+.-+++..+.++.|.++.+... .-..+++++.+|.+|+.+..-....+.. ....-..++....+++
T Consensus 18 ~~ll~~L~~~Fek~~gv~V~~~~~---------gSg~ll~qi~~G~aDV~isa~~~~~~~l~~~g~~~~~~~~~~n~lVl 88 (236)
T 3lr1_A 18 SGLLKVLLPPFEKKNNVKVDVIAV---------GTGQALKLGEAGDVDVVFVHARKLEDKFVADGFGVNRKDVMYNDFVI 88 (236)
T ss_dssp HCHHHHHHHHHHHHHTCEEEEEEE---------CHHHHHHHHHTTSCSEEEECCHHHHHHHHHTTSEEEEEEEEECCEEE
T ss_pred hHHHHHHHHHHHHHhCCeEEEEEc---------ChHHHHHHHhcCCCCEEeecCchhHHHHHhcCCCcceEEEEcCcEEE
Confidence 467778899999888876665553 3677899999999999876332222110 0112246899999999
Q ss_pred EEecccC
Q 002211 588 VAPVRKL 594 (953)
Q Consensus 588 ~v~~~~~ 594 (953)
++|+..+
T Consensus 89 V~P~~~P 95 (236)
T 3lr1_A 89 VGPKNDP 95 (236)
T ss_dssp EECTTCT
T ss_pred EEECCCh
Confidence 9998764
No 299
>3dbi_A Sugar-binding transcriptional regulator, LACI FAM; structural genomics, sugar-binding transcriptional regulator structure initiative, PSI-2; HET: MSE; 2.45A {Escherichia coli K12}
Probab=50.55 E-value=52 Score=34.38 Aligned_cols=85 Identities=6% Similarity=-0.090 Sum_probs=57.9
Q ss_pred HHHcCCcEEEEEEec----CccccchHHHHHHHHHhcCcEEEEEEecCCCCCCChHHHHHHHHHHhcCCceEEEEEcchh
Q 002211 177 VSYFGWGEVIAIFND----DDQGRNGVTALGDKLAEIRCKISYKSALPPDQSVTETDVRNELVKVRMMEARVIVVHGYSR 252 (953)
Q Consensus 177 l~~~~w~~vaii~~d----~~~g~~~~~~l~~~l~~~g~~v~~~~~~~~~~~~~~~d~~~~l~~i~~~~~~vii~~~~~~ 252 (953)
++.-.-+.++++..+ ++|.......+.+++++.|..+..... . .+...-...++.+.+.+.|.||+.....
T Consensus 56 l~~~~~~~Igvi~~~~~~~~~~~~~~~~gi~~~a~~~g~~~~~~~~-~----~~~~~~~~~~~~l~~~~vdgiIi~~~~~ 130 (338)
T 3dbi_A 56 LSAKSTQTLGLVVTNTLYHGIYFSELLFHAARMAEEKGRQLLLADG-K----HSAEEERQAIQYLLDLRCDAIMIYPRFL 130 (338)
T ss_dssp ----CCSEEEEEECTTTTSTTHHHHHHHHHHHHHHHTTCEEEEEEC-T----TSHHHHHHHHHHHHHTTCSEEEECCSSS
T ss_pred hhhCCCCEEEEEecCCcccChhHHHHHHHHHHHHHHCCCEEEEEeC-C----CChHHHHHHHHHHHhCCCCEEEEeCCCC
Confidence 333445789999865 567778889999999999998875431 1 1244455677888888999999976554
Q ss_pred hHHHHHHHHHHcCC
Q 002211 253 TGLMVFDVAQRLGM 266 (953)
Q Consensus 253 ~~~~~~~~a~~~g~ 266 (953)
....+.+.+.+.|.
T Consensus 131 ~~~~~~~~~~~~~i 144 (338)
T 3dbi_A 131 SVDEIDDIIDAHSQ 144 (338)
T ss_dssp CHHHHHHHHHHCSS
T ss_pred ChHHHHHHHHcCCC
Confidence 44556666666664
No 300
>3p6l_A Sugar phosphate isomerase/epimerase; TIM barrel, structural genomics, joint center for structural genomics, JCSG; HET: CIT; 1.85A {Parabacteroides distasonis}
Probab=50.52 E-value=68 Score=32.00 Aligned_cols=93 Identities=9% Similarity=0.008 Sum_probs=68.3
Q ss_pred HHHHHHHHHcCCcEEEEEEec------------CccccchHHHHHHHHHhcCcEEEEEEecCCCCCCChHHHHHHHHHHh
Q 002211 171 SAIAEMVSYFGWGEVIAIFND------------DDQGRNGVTALGDKLAEIRCKISYKSALPPDQSVTETDVRNELVKVR 238 (953)
Q Consensus 171 ~ai~~~l~~~~w~~vaii~~d------------~~~g~~~~~~l~~~l~~~g~~v~~~~~~~~~~~~~~~d~~~~l~~i~ 238 (953)
...++.++..|.+.|=+...+ ........+.+++.+++.|+++........ ...+++...+...+
T Consensus 25 ~~~l~~~~~~G~~~vEl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~i~~~~~~~~---~~~~~~~~~i~~A~ 101 (262)
T 3p6l_A 25 TEALDKTQELGLKYIEIYPGHKLGGKWGDKVFDFNLDAQTQKEIKELAASKGIKIVGTGVYVA---EKSSDWEKMFKFAK 101 (262)
T ss_dssp HHHHHHHHHTTCCEEEECTTEECCGGGTTCEESTTCCHHHHHHHHHHHHHTTCEEEEEEEECC---SSTTHHHHHHHHHH
T ss_pred HHHHHHHHHcCCCEEeecCCcccccccccccccccCCHHHHHHHHHHHHHcCCeEEEEeccCC---ccHHHHHHHHHHHH
Confidence 556777888999988776422 122234578999999999999876654432 23567888888888
Q ss_pred cCCceEEEEEcchhhHHHHHHHHHHcCC
Q 002211 239 MMEARVIVVHGYSRTGLMVFDVAQRLGM 266 (953)
Q Consensus 239 ~~~~~vii~~~~~~~~~~~~~~a~~~g~ 266 (953)
..+++.|+++........+...|.+.|+
T Consensus 102 ~lGa~~v~~~~~~~~~~~l~~~a~~~gv 129 (262)
T 3p6l_A 102 AMDLEFITCEPALSDWDLVEKLSKQYNI 129 (262)
T ss_dssp HTTCSEEEECCCGGGHHHHHHHHHHHTC
T ss_pred HcCCCEEEecCCHHHHHHHHHHHHHhCC
Confidence 8999999998766667777777777775
No 301
>2fn9_A Ribose ABC transporter, periplasmic ribose-bindin; RBP, ribose binding protein, periplasmic binding protein, thermophilic proteins; 1.40A {Thermotoga maritima} PDB: 2fn8_A*
Probab=50.27 E-value=42 Score=34.08 Aligned_cols=79 Identities=5% Similarity=0.037 Sum_probs=55.6
Q ss_pred cEEEEEEec--CccccchHHHHHHHHHhcCcEEEEEEecCCCCCCChHHHHHHHHHHhcCCceEEEEEcchh-hHHHHHH
Q 002211 183 GEVIAIFND--DDQGRNGVTALGDKLAEIRCKISYKSALPPDQSVTETDVRNELVKVRMMEARVIVVHGYSR-TGLMVFD 259 (953)
Q Consensus 183 ~~vaii~~d--~~~g~~~~~~l~~~l~~~g~~v~~~~~~~~~~~~~~~d~~~~l~~i~~~~~~vii~~~~~~-~~~~~~~ 259 (953)
++|+++..+ ++|.....+.+.+++++.|..+..... . .+...-...++.+...++|.||+..... .....++
T Consensus 3 ~~Ig~i~~~~~~~~~~~~~~gi~~~~~~~g~~~~~~~~---~--~~~~~~~~~~~~l~~~~vdgiI~~~~~~~~~~~~~~ 77 (290)
T 2fn9_A 3 GKMAIVISTLNNPWFVVLAETAKQRAEQLGYEATIFDS---Q--NDTAKESAHFDAIIAAGYDAIIFNPTDADGSIANVK 77 (290)
T ss_dssp CEEEEEESCSSSHHHHHHHHHHHHHHHHTTCEEEEEEC---T--TCHHHHHHHHHHHHHTTCSEEEECCSCTTTTHHHHH
T ss_pred eEEEEEeCCCCChHHHHHHHHHHHHHHHcCCEEEEeCC---C--CCHHHHHHHHHHHHHcCCCEEEEecCChHHHHHHHH
Confidence 468888854 678888899999999999998765321 1 1244455667888788999999875433 3335677
Q ss_pred HHHHcCC
Q 002211 260 VAQRLGM 266 (953)
Q Consensus 260 ~a~~~g~ 266 (953)
++.+.|.
T Consensus 78 ~~~~~~i 84 (290)
T 2fn9_A 78 RAKEAGI 84 (290)
T ss_dssp HHHHTTC
T ss_pred HHHHCCC
Confidence 7777664
No 302
>3o66_A Glycine betaine/carnitine/choline ABC transporter; structural genomics, PSI-2, protein structure initiative; HET: PGE; 1.86A {Staphylococcus aureus subsp} SCOP: c.94.1.0
Probab=50.23 E-value=55 Score=33.44 Aligned_cols=90 Identities=11% Similarity=0.058 Sum_probs=52.7
Q ss_pred CCCChHHhhhCC--CeEEEEe------CchHHHHHHHhhCCCccceEeCCCHHHHHHHHHcCCcEEEEccchhHHHHHhc
Q 002211 701 PIKGIDTLMTSN--DRVGYQV------GSFAENYLIEELSIPKSRLVALGSPEEYAIALENRTVAAVVDERPYIDLFLSD 772 (953)
Q Consensus 701 ~I~sl~dL~~~~--~~ig~~~------~s~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~g~~~a~~~~~~~~~~~~~~ 772 (953)
.|+|++||.+.. ..+|... |.-+.. +.+.+++....+... +.....+++++|+.+++..-.+...+-.
T Consensus 129 ~l~sisDL~~~~~~~~~g~~~ef~~r~gdG~~~-l~~~Ygl~~~~~~~~-d~g~~~~A~~~~~~~v~~~wsp~~~~~~-- 204 (282)
T 3o66_A 129 HLETVSDLAKHSKDLRLGMDSSWMNRKGDGYEG-FKKEYGFDFGTVRPM-QIGLVYDALNTEKLDVALGYSTDGRIAA-- 204 (282)
T ss_dssp TCSBSGGGTTTGGGCEEEEEGGGCC--CCSHHH-HHHHHCCCCSEEEEE-CGGGHHHHHHTTSCSEEEEETTCHHHHH--
T ss_pred CCCCHHHHHhcccceEEecCcccccCchhHHHH-HHHHcCCCCcccccc-CHHHHHHHHHcCCCeEEEEeCCCchhhh--
Confidence 799999998643 3577654 232333 345677653334444 4446788999999998887766544421
Q ss_pred CcceEEeCC---ccccCccEEEecCC
Q 002211 773 HCQFSVRGQ---EFTKSGWGFAFPRD 795 (953)
Q Consensus 773 ~~~l~~~~~---~~~~~~~~~~~~k~ 795 (953)
.++..+.. .|.......+++++
T Consensus 205 -~dL~~LeD~k~~fp~~~~~~vvr~~ 229 (282)
T 3o66_A 205 -YDLKVLKDDKQFFPPYAASAVATNE 229 (282)
T ss_dssp -TTCEECBCTTCCSCCCBEEEEEEHH
T ss_pred -cCceEcCCCcccccccceeEEEcHH
Confidence 23444432 23333445555554
No 303
>2g2c_A Putative molybdenum cofactor biosynthesis protein; structural genomics, PSI, protein structure initiative; 1.50A {Corynebacterium diphtheriae} SCOP: c.57.1.1
Probab=49.92 E-value=28 Score=32.41 Aligned_cols=63 Identities=17% Similarity=0.219 Sum_probs=43.8
Q ss_pred EEEEEEecCcc--c---cchHHHHHHH----HHhcCcEEEEEEecCCCCCCChHHHHHHHHHHhcCCceEEEEEcc
Q 002211 184 EVIAIFNDDDQ--G---RNGVTALGDK----LAEIRCKISYKSALPPDQSVTETDVRNELVKVRMMEARVIVVHGY 250 (953)
Q Consensus 184 ~vaii~~d~~~--g---~~~~~~l~~~----l~~~g~~v~~~~~~~~~~~~~~~d~~~~l~~i~~~~~~vii~~~~ 250 (953)
++++|...|+- | ......+.+. +++.|+++.....++.+ .+.+...+++..+.++|+||..+.
T Consensus 7 ~v~Ii~~GdEl~~G~i~D~n~~~l~~~~~~~l~~~G~~v~~~~iv~Dd----~~~I~~~l~~a~~~~~DlVittGG 78 (167)
T 2g2c_A 7 KSAIIVVSDRISTGTRENKALPLLQRLMSDELQDYSYELISEVVVPEG----YDTVVEAIATALKQGARFIITAGG 78 (167)
T ss_dssp EEEEEEECHHHHHTSSCCCHHHHHHHHHCC----CEEEEEEEEEECSS----HHHHHHHHHHHHHTTCSEEEEESC
T ss_pred EEEEEEECCcccCCceeccHHHHHHHhHHhHHHHCCCEEeEEEEeCCC----HHHHHHHHHHHHhCCCCEEEECCC
Confidence 67777754432 1 2345677888 88999998887777766 788888888887656999998754
No 304
>3qvl_A Putative hydantoin racemase; isomerase; HET: 5HY; 1.82A {Klebsiella pneumoniae subsp} PDB: 3qvk_A* 3qvj_A
Probab=49.84 E-value=2e+02 Score=28.41 Aligned_cols=170 Identities=11% Similarity=0.013 Sum_probs=88.8
Q ss_pred EEEeEEEecCCCchhHHHHHHHHHHHHHhcCCCCCCCcEEEEEEecCCC-------ChHHHH----HHHHHHHhcCcEEE
Q 002211 50 LNVGAIFSFGTVNGQVSRIAMKAAQDDINSDPRVLGGRKLSITMHDAKF-------NGFLSI----MGALQFMETDTLAI 118 (953)
Q Consensus 50 i~IG~l~~~~~~~g~~~~~a~~lAve~iN~~g~il~g~~l~l~~~D~~~-------~~~~a~----~~a~~li~~~v~ai 118 (953)
.+|.++.|.++. .+-..+.-+++.+. . +|.++.....+.+. +...+. ..+.++..+++.+|
T Consensus 2 mrilvINPnts~---~~T~~i~~~~~~~~-~----p~~~i~~~t~~~gp~~i~~~~d~~~a~~~l~~~~~~l~~~g~d~i 73 (245)
T 3qvl_A 2 VRIQVINPNTSL---AMTETIGAAARAVA-A----PGTEILAVCPRAGVPSIEGHFDEAIAAVGVLEQIRAGREQGVDGH 73 (245)
T ss_dssp EEEEEECSSCCH---HHHHHHHHHHHHHC-C----TTEEEEEECCSSSCSSCCSHHHHHHHHHHHHHHHHHHHHHTCSEE
T ss_pred CEEEEEeCCCCH---HHHHHHHHHHHHhc-C----CCCEEEEEeCCCCchhhcChhHHHHHHHHHHHHHHHHHHCCCCEE
Confidence 578899998763 34445555555543 1 57788877665442 222222 22233344588888
Q ss_pred EccCChhhHHHHHHhhhhCCCcEEEeecCCCCCCCCCCCcEEEccCChHHHHHHHHHHHHHcCCcEEEEEEecCccccch
Q 002211 119 VGPQSAVMAHVLSHLANELQVPLLSFTALDPTLSPLQYPFFVQTAPNDLYLMSAIAEMVSYFGWGEVIAIFNDDDQGRNG 198 (953)
Q Consensus 119 iGp~~S~~a~av~~v~~~~~vP~Is~~at~~~ls~~~~p~~fr~~p~d~~~~~ai~~~l~~~~w~~vaii~~d~~~g~~~ 198 (953)
+=+..+..+. ..+-+..++|+|.. .++.++.....+ ++|++|......
T Consensus 74 viaCnt~~~l--~~lr~~~~iPvigi-------------------------~e~~~~~a~~~~-~rigVlaT~~t~---- 121 (245)
T 3qvl_A 74 VIASFGDPGL--LAARELAQGPVIGI-------------------------AEAAMHMATMVA-TRFSIVTTLPRT---- 121 (245)
T ss_dssp EEC-CCCTTH--HHHHHHCSSCEEEH-------------------------HHHHHHHHHHHC-SCEEEEESCGGG----
T ss_pred EEeCCChhHH--HHHHHHcCCCEECc-------------------------cHHHHHHHHHcC-CEEEEEEcchhH----
Confidence 8766665543 44556678998863 122222222234 889999865532
Q ss_pred HHHHHHHHHhcCcE--EEEEEecCCC--C--CCC---hHHHHHHHHHH-hcCCceEEEEEcch-hhHHHHHH
Q 002211 199 VTALGDKLAEIRCK--ISYKSALPPD--Q--SVT---ETDVRNELVKV-RMMEARVIVVHGYS-RTGLMVFD 259 (953)
Q Consensus 199 ~~~l~~~l~~~g~~--v~~~~~~~~~--~--~~~---~~d~~~~l~~i-~~~~~~vii~~~~~-~~~~~~~~ 259 (953)
...+.+.+++.|.. +......... . ... ...+.....+. ++.++|+||+.|.. ......++
T Consensus 122 ~~~~~~~l~~~g~~~~~~~v~~~~~~~~~l~~~~~~~~~~l~~~~~~~~~~~gad~IVLGCTh~p~l~~~i~ 193 (245)
T 3qvl_A 122 LIIARHLLHQYGFHQHCAALHAIDLPVLALEDGSGLAQEKVRERCIRALKEDGSGAIVLGSGGMATLAQQLT 193 (245)
T ss_dssp HHHHHHHHHHHTCGGGEEEEEECCSCGGGGGSSSSHHHHHHHHHHHHHHHHSCCSEEEECCGGGGGGHHHHH
T ss_pred HHHHHHHHHHcCCCCeEEEEeCCCCCHHHHcCCcHHHHHHHHHHHHHHHHhcCCCEEEECCCChHHHHHHHH
Confidence 35666666666542 2211111110 0 001 12233333333 34789999997754 44444443
No 305
>4euo_A ABC transporter, substrate binding protein (polya; class D of PBP, GABA-binding, transport protein; 1.28A {Agrobacterium tumefaciens} PDB: 4eq7_A
Probab=49.65 E-value=2.3e+02 Score=28.95 Aligned_cols=84 Identities=2% Similarity=-0.086 Sum_probs=49.5
Q ss_pred ceEeCCCHHHHHHHHHcCCcEEEEccchhHHHHHhcCcceEEeCCccccCccEEEecCCCcchHHHHHHHHhhhccccHH
Q 002211 737 RLVALGSPEEYAIALENRTVAAVVDERPYIDLFLSDHCQFSVRGQEFTKSGWGFAFPRDSPLAIDMSTAILTLSENGELQ 816 (953)
Q Consensus 737 ~~~~~~~~~~~~~~l~~g~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~k~spl~~~~n~~i~~l~e~G~~~ 816 (953)
.+..+.+..+..+.+.+|++++.+.-.........+..++.++-+--.....+++++|+++-.+.--+.|..|.......
T Consensus 175 ~~~~~~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~i~k~s~~~e~A~~fi~fl~s~e~q~ 254 (320)
T 4euo_A 175 DIIWWSGGAQSQQLIASAEAPFGSVWNGRMTALEQSGVKVETSWAQNITAADSLVVPKGTKNKDAAMKFIALATSAQAQA 254 (320)
T ss_dssp GEEEECSHHHHHHHHHTTSSCEEEEEHHHHHHHHHTTCCCEEEEEEEEEEEEEEECBTTCSCHHHHHHHHHHHTSHHHHH
T ss_pred ceeEeCCCchHHHHHHcCCEEEEEeecHHHHHHHhCCCCeEEEecCceeecceEEEECCCCCHHHHHHHHHHHhCHHHHH
Confidence 34566777888999999999887765444433333333333322211123447889999997666666666665443333
Q ss_pred HHHH
Q 002211 817 RIHD 820 (953)
Q Consensus 817 ~~~~ 820 (953)
.+.+
T Consensus 255 ~~~~ 258 (320)
T 4euo_A 255 DMAT 258 (320)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 3333
No 306
>1ta9_A Glycerol dehydrogenase; oxidoredu; 1.90A {Schizosaccharomyces pombe}
Probab=48.47 E-value=30 Score=38.21 Aligned_cols=97 Identities=8% Similarity=0.017 Sum_probs=64.5
Q ss_pred HHHHHHHHcCCcEEEEEEecCccccchHHHHHHHHHhcCcEEEEEEecCCCCCCChHHHHHHHHHHhcCCceEEEEEcch
Q 002211 172 AIAEMVSYFGWGEVIAIFNDDDQGRNGVTALGDKLAEIRCKISYKSALPPDQSVTETDVRNELVKVRMMEARVIVVHGYS 251 (953)
Q Consensus 172 ai~~~l~~~~w~~vaii~~d~~~g~~~~~~l~~~l~~~g~~v~~~~~~~~~~~~~~~d~~~~l~~i~~~~~~vii~~~~~ 251 (953)
.+.++++.+|.+++.+|+....+. ...+.+.+.|++.|+++.+ ..+... .+.+++....+.+++ ++|+||..+.+
T Consensus 81 ~l~~~l~~~g~~rvlIVtd~~~~~-~~~~~v~~~L~~~gi~~~~-~~~~ge--~~~~~v~~~~~~~~~-~~D~IIAvGGG 155 (450)
T 1ta9_A 81 RSYMYVKKWATKSAVVLADQNVWN-ICANKIVDSLSQNGMTVTK-LVFGGE--ASLVELDKLRKQCPD-DTQVIIGVGGG 155 (450)
T ss_dssp GHHHHHTTTCSSEEEEEEEHHHHH-HTHHHHHHHHHHTTCEEEE-EEECSC--CCHHHHHHHHTTSCT-TCCEEEEEESH
T ss_pred HHHHHHHhcCCCEEEEEECccHHH-HHHHHHHHHHHHCCCeEEE-EeeCCC--CCHHHHHHHHHHHhh-CCCEEEEeCCc
Confidence 356677778866999998655443 4678888999989988753 234333 345667777777777 99999977654
Q ss_pred --hhHHHHHHHHHHcCCCCCceEEEEeCc
Q 002211 252 --RTGLMVFDVAQRLGMMDSGYVWIATTW 278 (953)
Q Consensus 252 --~~~~~~~~~a~~~g~~~~~~~wi~~~~ 278 (953)
-|+.+++... .| ..++-|.|..
T Consensus 156 SviD~AK~iA~~--~g---iP~I~IPTTA 179 (450)
T 1ta9_A 156 KTMDSAKYIAHS--MN---LPSIICPTTA 179 (450)
T ss_dssp HHHHHHHHHHHH--TT---CCEEEEESSC
T ss_pred HHHHHHHHHHHh--cC---CCEEEEeCCC
Confidence 5666666532 23 3556666653
No 307
>3fd3_A Chromosome replication initiation inhibitor prote; structural genomics, LYSR, PSI-2, structure initiative; HET: MSE P33 PG4; 1.70A {Agrobacterium tumefaciens str}
Probab=48.40 E-value=1.6e+02 Score=27.29 Aligned_cols=68 Identities=10% Similarity=-0.020 Sum_probs=42.7
Q ss_pred EeeHHHHHHHHHhCCCcccEEEeeCCCCCCCCChHHHHHHHHcCceeEEEecEEEecCccceeeccccceecceEEEEec
Q 002211 512 GYCIDVFLAAVRLLPYAVPYKFIPYGDGHKNPTYSELINQITTGVFDAAVGDIAIVTNRTKAVDFTQPYIESGLVVVAPV 591 (953)
Q Consensus 512 G~~~dll~~la~~l~~~~~~~~~~~~~~~~n~~~~~~i~~l~~g~~Di~~~~~~~t~~r~~~vdft~p~~~~~~~~~v~~ 591 (953)
.+..+++..+.++.+ ++++... ++..++++.+.+|..|+++..- ......+. ..++....++++++.
T Consensus 15 ~~l~~~l~~f~~~~~--v~l~l~~-------~~~~~~~~~l~~g~d~~~i~~~---~~~~~~l~-~~~l~~~~~~~v~~~ 81 (208)
T 3fd3_A 15 TWFLDAVSKFTGGSD--YLVNIAV-------DDQDHTVEWLRGGRVLAAVTAH---DKPVQGCR-VTPLGVLRYHATASP 81 (208)
T ss_dssp TTHHHHHHHHHHTSS--CEEEEEE-------CCSSCHHHHHHTTSCSEEEESC---CSCCTTCE-EEEEEEEEEEEEECH
T ss_pred HHHHHHHHHHHhhcC--eEEEEEe-------CCcHhHHHHHhcCcceEEEecC---CCCCCCce-EEEccceEEEEEECh
Confidence 456788899999886 5565554 4456789999999555544321 11112222 456777778777764
Q ss_pred c
Q 002211 592 R 592 (953)
Q Consensus 592 ~ 592 (953)
.
T Consensus 82 ~ 82 (208)
T 3fd3_A 82 D 82 (208)
T ss_dssp H
T ss_pred H
Confidence 4
No 308
>4ef1_A Pheromone COB1/lipoprotein, YAEC family; periplasmic methionine binding protein, NLPA lipoprotein, ST genomics; 1.90A {Enterococcus faecalis} PDB: 4ef2_A*
Probab=48.10 E-value=2e+02 Score=28.47 Aligned_cols=64 Identities=14% Similarity=0.140 Sum_probs=42.0
Q ss_pred CCCCChHHhhhCCCeEEEEeCchHHH----HHHHhhCC---------------------Cccce-EeCCCHHHHHHHHHc
Q 002211 700 SPIKGIDTLMTSNDRVGYQVGSFAEN----YLIEELSI---------------------PKSRL-VALGSPEEYAIALEN 753 (953)
Q Consensus 700 ~~I~sl~dL~~~~~~ig~~~~s~~~~----~l~~~~~~---------------------~~~~~-~~~~~~~~~~~~l~~ 753 (953)
..+++++||. .|.+|++..+...+. .| +..+. ...++ +.. ...+..+++.+
T Consensus 91 ~kiksl~dL~-~Ga~IAIpnd~sn~~RaL~lL-~~~GLI~Lk~~~~~~~~t~~DI~~Npk~l~~~~el-~aaql~~al~d 167 (246)
T 4ef1_A 91 KKYKSLQEIP-DGSTIYVSSSVSDWPRVLTIL-EDAGLITLKEGVDRTTATFDDIDKNTKKLKFNHES-DPAIMTTLYDN 167 (246)
T ss_dssp SSCSSGGGSC-TTCEEEEESCGGGHHHHHHHH-HHTTSEEECTTCCGGGCCGGGEEEETTCCEEEEEE-CGGGHHHHHHT
T ss_pred CCCCCHHHcC-CCCEEEeecCCchHHHHHHHH-HHCCCeeecCCCCcCcCCHhHHhcCCCccEEeeec-CHHHHHHHhcc
Confidence 5789999996 578999998664322 33 22222 01133 333 56778888999
Q ss_pred CCcEEEEccchhH
Q 002211 754 RTVAAVVDERPYI 766 (953)
Q Consensus 754 g~~~a~~~~~~~~ 766 (953)
|++|+.+....++
T Consensus 168 g~vDaavin~n~a 180 (246)
T 4ef1_A 168 EEGAAVLINSNFA 180 (246)
T ss_dssp TCSSEEEECHHHH
T ss_pred ccccEEEEechHH
Confidence 9999988876554
No 309
>2yxb_A Coenzyme B12-dependent mutase; alpha/beta, structural genomics, NPPSFA, national project on structural and functional analyses; 1.80A {Aeropyrum pernix}
Probab=47.83 E-value=1.1e+02 Score=28.16 Aligned_cols=86 Identities=14% Similarity=0.056 Sum_probs=56.6
Q ss_pred cEEEEEEecCccccchHHHHHHHHHhcCcEEEEEEecCCCCCCChHHHHHHHHHHhcCCceEEEEEcch----hhHHHHH
Q 002211 183 GEVIAIFNDDDQGRNGVTALGDKLAEIRCKISYKSALPPDQSVTETDVRNELVKVRMMEARVIVVHGYS----RTGLMVF 258 (953)
Q Consensus 183 ~~vaii~~d~~~g~~~~~~l~~~l~~~g~~v~~~~~~~~~~~~~~~d~~~~l~~i~~~~~~vii~~~~~----~~~~~~~ 258 (953)
.+|.+.....+.-.-+...+...|+..|.+|.+-... ......+..+++.+||+|.+.+.. .....++
T Consensus 19 ~~vlla~~~gd~HdiG~~~va~~l~~~G~eVi~lG~~--------~p~e~lv~aa~~~~~diV~lS~~~~~~~~~~~~~i 90 (161)
T 2yxb_A 19 YKVLVAKMGLDGHDRGAKVVARALRDAGFEVVYTGLR--------QTPEQVAMAAVQEDVDVIGVSILNGAHLHLMKRLM 90 (161)
T ss_dssp CEEEEEEESSSSCCHHHHHHHHHHHHTTCEEECCCSB--------CCHHHHHHHHHHTTCSEEEEEESSSCHHHHHHHHH
T ss_pred CEEEEEeCCCCccHHHHHHHHHHHHHCCCEEEECCCC--------CCHHHHHHHHHhcCCCEEEEEeechhhHHHHHHHH
Confidence 4566555555444455677778889999998753211 123356777778899999998753 5677788
Q ss_pred HHHHHcCCCCCceEEEEeC
Q 002211 259 DVAQRLGMMDSGYVWIATT 277 (953)
Q Consensus 259 ~~a~~~g~~~~~~~wi~~~ 277 (953)
+++++.|.. .-.+|+++.
T Consensus 91 ~~L~~~g~~-~i~v~vGG~ 108 (161)
T 2yxb_A 91 AKLRELGAD-DIPVVLGGT 108 (161)
T ss_dssp HHHHHTTCT-TSCEEEEEC
T ss_pred HHHHhcCCC-CCEEEEeCC
Confidence 888887752 234566543
No 310
>3brq_A HTH-type transcriptional regulator ASCG; transcriptional repressor structure escherichia coli, struct genomics, PSI-2; HET: FRU; 2.00A {Escherichia coli}
Probab=47.06 E-value=68 Score=32.46 Aligned_cols=84 Identities=6% Similarity=-0.115 Sum_probs=53.6
Q ss_pred HHHcCCcEEEEEEec----CccccchHHHHHHHHHhcCcEEEEEEecCCCCCCChHHHHHHHHHHhcCCceEEEEEcchh
Q 002211 177 VSYFGWGEVIAIFND----DDQGRNGVTALGDKLAEIRCKISYKSALPPDQSVTETDVRNELVKVRMMEARVIVVHGYSR 252 (953)
Q Consensus 177 l~~~~w~~vaii~~d----~~~g~~~~~~l~~~l~~~g~~v~~~~~~~~~~~~~~~d~~~~l~~i~~~~~~vii~~~~~~ 252 (953)
++.-.-.+|+++..+ ++|.....+.+.+++++.|..+.... .. .+.......++.+...+.|.||+.....
T Consensus 14 L~~~~~~~Ig~i~~~~~~~~~~~~~~~~gi~~~~~~~g~~~~~~~---~~--~~~~~~~~~~~~l~~~~vdgii~~~~~~ 88 (296)
T 3brq_A 14 LSAKSTQTLGLVVTNTLYHGIYFSELLFHAARMAEEKGRQLLLAD---GK--HSAEEERQAIQYLLDLRCDAIMIYPRFL 88 (296)
T ss_dssp -----CCEEEEEECGGGCC--CHHHHHHHHHHHHHHTTCEEEEEC---CT--TSHHHHHHHHHHHHHTTCSEEEEECSSS
T ss_pred hhcCCCceEEEEeCCcccCCchHHHHHHHHHHHHHHCCCEEEEEe---CC--CCHHHHHHHHHHHHhcCCCEEEEecCCC
Confidence 333344689998854 56778889999999999999876532 22 2244556677888888999999876533
Q ss_pred hHHHHHHHHHH-cCC
Q 002211 253 TGLMVFDVAQR-LGM 266 (953)
Q Consensus 253 ~~~~~~~~a~~-~g~ 266 (953)
.. ..++.+.+ .|.
T Consensus 89 ~~-~~~~~l~~~~~i 102 (296)
T 3brq_A 89 SV-DEIDDIIDAHSQ 102 (296)
T ss_dssp CH-HHHHHHHHTCSS
T ss_pred Ch-HHHHHHHhcCCC
Confidence 22 34566666 564
No 311
>3tsm_A IGPS, indole-3-glycerol phosphate synthase; structural genomics, ssgcid, seattle structural GE center for infectious disease, lyase; 2.15A {Brucella melitensis} SCOP: c.1.2.0
Probab=46.79 E-value=1e+02 Score=31.22 Aligned_cols=87 Identities=16% Similarity=0.017 Sum_probs=62.0
Q ss_pred HHHHHHHHHcCCcEEEEEEecCccccchHHHHHHHHHhcCcEEEEEEecCCCCCCChHHHHHHHHHHhcCCceEEEEEcc
Q 002211 171 SAIAEMVSYFGWGEVIAIFNDDDQGRNGVTALGDKLAEIRCKISYKSALPPDQSVTETDVRNELVKVRMMEARVIVVHGY 250 (953)
Q Consensus 171 ~ai~~~l~~~~w~~vaii~~d~~~g~~~~~~l~~~l~~~g~~v~~~~~~~~~~~~~~~d~~~~l~~i~~~~~~vii~~~~ 250 (953)
..++......|...+.++.... |..+..+.+...-+..++.|.....+-.. + ++.+.+..++|.|++...
T Consensus 82 ~~~A~~y~~~GA~~IsVltd~~-~f~Gs~~~L~~ir~~v~lPVl~Kdfi~d~-------~--qi~ea~~~GAD~VlLi~a 151 (272)
T 3tsm_A 82 PALAKAYEEGGAACLSVLTDTP-SFQGAPEFLTAARQACSLPALRKDFLFDP-------Y--QVYEARSWGADCILIIMA 151 (272)
T ss_dssp HHHHHHHHHTTCSEEEEECCST-TTCCCHHHHHHHHHTSSSCEEEESCCCST-------H--HHHHHHHTTCSEEEEETT
T ss_pred HHHHHHHHHCCCCEEEEecccc-ccCCCHHHHHHHHHhcCCCEEECCccCCH-------H--HHHHHHHcCCCEEEEccc
Confidence 4567777788999999887444 44466677766655667877655433221 1 577788899999999864
Q ss_pred ---hhhHHHHHHHHHHcCCC
Q 002211 251 ---SRTGLMVFDVAQRLGMM 267 (953)
Q Consensus 251 ---~~~~~~~~~~a~~~g~~ 267 (953)
..+...+++.++++||.
T Consensus 152 ~L~~~~l~~l~~~a~~lGl~ 171 (272)
T 3tsm_A 152 SVDDDLAKELEDTAFALGMD 171 (272)
T ss_dssp TSCHHHHHHHHHHHHHTTCE
T ss_pred ccCHHHHHHHHHHHHHcCCe
Confidence 35678899999999974
No 312
>3ksm_A ABC-type sugar transport system, periplasmic COMP; periplasmic component, PSI- 11023L, structural genomics, protein structure initiative; HET: BDR; 1.90A {Hahella chejuensis}
Probab=46.54 E-value=32 Score=34.58 Aligned_cols=80 Identities=6% Similarity=-0.044 Sum_probs=56.5
Q ss_pred EEEEEEe--cCccccchHHHHHHHHHhcCcEEEEEEecCCCCCCChHHHHHHHHHHhcCC-ceEEEEEcc-hhhHHHHHH
Q 002211 184 EVIAIFN--DDDQGRNGVTALGDKLAEIRCKISYKSALPPDQSVTETDVRNELVKVRMME-ARVIVVHGY-SRTGLMVFD 259 (953)
Q Consensus 184 ~vaii~~--d~~~g~~~~~~l~~~l~~~g~~v~~~~~~~~~~~~~~~d~~~~l~~i~~~~-~~vii~~~~-~~~~~~~~~ 259 (953)
+|+++.. +++|.....+.+.+++++.|.++.....- .. .+.......++.+.+.+ +|.||+... .......++
T Consensus 2 ~Ig~i~~~~~~~~~~~~~~gi~~~~~~~g~~~~~~~~~-~~--~~~~~~~~~i~~l~~~~~vdgii~~~~~~~~~~~~~~ 78 (276)
T 3ksm_A 2 KLLLVLKGDSNAYWRQVYLGAQKAADEAGVTLLHRSTK-DD--GDIAGQIQILSYHLSQAPPDALILAPNSAEDLTPSVA 78 (276)
T ss_dssp EEEEECSCSSSTHHHHHHHHHHHHHHHHTCEEEECCCS-ST--TCHHHHHHHHHHHHHHSCCSEEEECCSSTTTTHHHHH
T ss_pred eEEEEeCCCCChHHHHHHHHHHHHHHHcCCEEEEECCC-CC--CCHHHHHHHHHHHHHhCCCCEEEEeCCCHHHHHHHHH
Confidence 5777774 46678888999999999999988753211 11 22444556777887778 999999774 344566788
Q ss_pred HHHHcCC
Q 002211 260 VAQRLGM 266 (953)
Q Consensus 260 ~a~~~g~ 266 (953)
++.+.|+
T Consensus 79 ~~~~~~i 85 (276)
T 3ksm_A 79 QYRARNI 85 (276)
T ss_dssp HHHHTTC
T ss_pred HHHHCCC
Confidence 8888775
No 313
>3cg1_A UPF0100 protein PF0080; ABC transporter, binding protein, molybdate, tungstate, ligand, unknown function, transport protein; 1.60A {Pyrococcus furiosus} PDB: 3cg3_A
Probab=46.48 E-value=2.4e+02 Score=28.40 Aligned_cols=69 Identities=13% Similarity=0.074 Sum_probs=43.1
Q ss_pred HHHHHHH---Hh-CCCcccE--EEeeCCCCCCCCChHHHHHHHHc-C-ceeEEEecEEEecC---ccceeeccccceecc
Q 002211 516 DVFLAAV---RL-LPYAVPY--KFIPYGDGHKNPTYSELINQITT-G-VFDAAVGDIAIVTN---RTKAVDFTQPYIESG 584 (953)
Q Consensus 516 dll~~la---~~-l~~~~~~--~~~~~~~~~~n~~~~~~i~~l~~-g-~~Di~~~~~~~t~~---r~~~vdft~p~~~~~ 584 (953)
++++.+. ++ .|.++++ .+ ++-.+++.++.+ | .+|+.+..-....+ .....+...||....
T Consensus 21 ~~~~~F~~~~~~~~gi~V~~~~~~---------~~s~~l~~~i~~~g~~~Dv~~~~~~~~~~~l~~~g~~~~~~~~~~~~ 91 (296)
T 3cg1_A 21 EVEKEFSEYAERNLGIKVSFQDEA---------SGSVMAVRKVTDLGRKADVIGVADYTLIPQLLIPNYTDFYVLFATNE 91 (296)
T ss_dssp HHHHHHHHHHHHHHSCCEEEEEEE---------ECHHHHHHHHHTSCCCCSEEEESSTTHHHHHTTTTTCSCCEEEEECC
T ss_pred HHHHHHHHHHHhCCCceEEEEeec---------CCHHHHHHHHHhCCCCCCEEEECChhHHHHHhcCCCCCcceeccccc
Confidence 5777777 76 6877666 33 335678888887 5 59987653211111 111224567888888
Q ss_pred eEEEEeccc
Q 002211 585 LVVVAPVRK 593 (953)
Q Consensus 585 ~~~~v~~~~ 593 (953)
++++++...
T Consensus 92 ~vi~~~~~~ 100 (296)
T 3cg1_A 92 IVIAFTDKS 100 (296)
T ss_dssp EEEEECTTS
T ss_pred EEEEEcCCC
Confidence 888887654
No 314
>1i4n_A Indole-3-glycerol phosphate synthase; thermostable TIM-barrel protein, salt bridges, electrostatic interactions, lyase; 2.50A {Thermotoga maritima} SCOP: c.1.2.4 PDB: 1j5t_A
Probab=46.41 E-value=65 Score=32.21 Aligned_cols=86 Identities=12% Similarity=0.049 Sum_probs=60.3
Q ss_pred HHHHHHHHHcCCcEEEEEEecCccccchHHHHHHHHHhcCcEEEEEEecCCCCCCChHHHHHHHHHHhcCCceEEEEEcc
Q 002211 171 SAIAEMVSYFGWGEVIAIFNDDDQGRNGVTALGDKLAEIRCKISYKSALPPDQSVTETDVRNELVKVRMMEARVIVVHGY 250 (953)
Q Consensus 171 ~ai~~~l~~~~w~~vaii~~d~~~g~~~~~~l~~~l~~~g~~v~~~~~~~~~~~~~~~d~~~~l~~i~~~~~~vii~~~~ 250 (953)
..+++..... ..-+.+++ |..|..+..+.+...-+..++.|..+..+-. .+ ++.+.+..++|+|.+.+.
T Consensus 64 ~~iA~~y~~~-A~~IsVlT-d~~~F~gs~~dL~~ir~~v~lPvLrKDfi~~-------~~--qi~ea~~~GAD~ilLi~a 132 (251)
T 1i4n_A 64 EDFIRMYDEL-ADAISILT-EKHYFKGDPAFVRAARNLTCRPILAKDFYID-------TV--QVKLASSVGADAILIIAR 132 (251)
T ss_dssp HHHHHHHHHH-CSEEEEEC-CCSSSCCCTHHHHHHHTTCCSCEEEECCCCS-------TH--HHHHHHHTTCSEEEEEGG
T ss_pred HHHHHHHHHh-CCceEEEe-cccccCCCHHHHHHHHHhCCCCEEEeeCCCC-------HH--HHHHHHHcCCCEEEEecc
Confidence 4455544444 56666665 6667777777787766666787776553322 23 466788899999999876
Q ss_pred h---hhHHHHHHHHHHcCCC
Q 002211 251 S---RTGLMVFDVAQRLGMM 267 (953)
Q Consensus 251 ~---~~~~~~~~~a~~~g~~ 267 (953)
. .....+++.++++||.
T Consensus 133 ~l~~~~l~~l~~~a~~lGl~ 152 (251)
T 1i4n_A 133 ILTAEQIKEIYEAAEELGMD 152 (251)
T ss_dssp GSCHHHHHHHHHHHHTTTCE
T ss_pred cCCHHHHHHHHHHHHHcCCe
Confidence 5 5788899999999974
No 315
>3kke_A LACI family transcriptional regulator; structural genomics, DNA-binding, transcription regulation, PSI-2; 2.20A {Mycobacterium smegmatis str}
Probab=46.07 E-value=38 Score=34.81 Aligned_cols=85 Identities=6% Similarity=-0.067 Sum_probs=54.9
Q ss_pred HHHHcCCcEEEEEEec--CccccchHHHHHHHHHhcCcEEEEEEecCCCCCCChHHHHHHHHHHhcCCceEEEEEcchhh
Q 002211 176 MVSYFGWGEVIAIFND--DDQGRNGVTALGDKLAEIRCKISYKSALPPDQSVTETDVRNELVKVRMMEARVIVVHGYSRT 253 (953)
Q Consensus 176 ~l~~~~w~~vaii~~d--~~~g~~~~~~l~~~l~~~g~~v~~~~~~~~~~~~~~~d~~~~l~~i~~~~~~vii~~~~~~~ 253 (953)
-++.-.-+.|+++..+ ++|.......+.+++++.|..+.....- . +...-...++.+.+.+.|.||+......
T Consensus 9 ~L~~~~s~~Igvi~~~~~~~~~~~~~~gi~~~a~~~g~~~~~~~~~-~----~~~~~~~~~~~l~~~~vdgiI~~~~~~~ 83 (303)
T 3kke_A 9 ALRHSRSGTIGLIVPDVNNAVFADMFSGVQMAASGHSTDVLLGQID-A----PPRGTQQLSRLVSEGRVDGVLLQRREDF 83 (303)
T ss_dssp --------CEEEEESCTTSTTHHHHHHHHHHHHHHTTCCEEEEECC-S----TTHHHHHHHHHHHSCSSSEEEECCCTTC
T ss_pred HHhhCCCCEEEEEeCCCcChHHHHHHHHHHHHHHHCCCEEEEEeCC-C----ChHHHHHHHHHHHhCCCcEEEEecCCCC
Confidence 3444444678888864 6688889999999999999987654321 1 2345567788888899999999765433
Q ss_pred HHHHHHHHHHcCC
Q 002211 254 GLMVFDVAQRLGM 266 (953)
Q Consensus 254 ~~~~~~~a~~~g~ 266 (953)
....++.+.+ |+
T Consensus 84 ~~~~~~~l~~-~i 95 (303)
T 3kke_A 84 DDDMLAAVLE-GV 95 (303)
T ss_dssp CHHHHHHHHT-TS
T ss_pred cHHHHHHHhC-CC
Confidence 2225666666 64
No 316
>1jx6_A LUXP protein; protein-ligand complex, signaling protein; HET: AI2; 1.50A {Vibrio harveyi} SCOP: c.93.1.1 PDB: 1zhh_A* 2hj9_A*
Probab=45.97 E-value=46 Score=34.83 Aligned_cols=82 Identities=4% Similarity=0.034 Sum_probs=53.9
Q ss_pred cEEEEEEec---CccccchHHHHHHHHHhcCcEEEEEEecCC-CCCCChHHHHHHHHHHhcCCceEEEEEcchhhHHHHH
Q 002211 183 GEVIAIFND---DDQGRNGVTALGDKLAEIRCKISYKSALPP-DQSVTETDVRNELVKVRMMEARVIVVHGYSRTGLMVF 258 (953)
Q Consensus 183 ~~vaii~~d---~~~g~~~~~~l~~~l~~~g~~v~~~~~~~~-~~~~~~~d~~~~l~~i~~~~~~vii~~~~~~~~~~~~ 258 (953)
+.|+++..+ ++|.......+.+++++.|..+.....-.. . .+...-...++.+...++|.||+..........+
T Consensus 44 ~~Igvi~~~~~~~~~~~~~~~gi~~~a~~~g~~~~~~~~~~~~~--~~~~~~~~~i~~l~~~~vdgiIi~~~~~~~~~~~ 121 (342)
T 1jx6_A 44 IKISVVYPGQQVSDYWVRNIASFEKRLYKLNINYQLNQVFTRPN--ADIKQQSLSLMEALKSKSDYLIFTLDTTRHRKFV 121 (342)
T ss_dssp EEEEEEECCCSSCCHHHHHHHHHHHHHHHTTCCEEEEEEECCTT--CCHHHHHHHHHHHHHTTCSEEEECCSSSTTHHHH
T ss_pred eEEEEEecCCcccHHHHHHHHHHHHHHHHcCCeEEEEecCCCCc--cCHHHHHHHHHHHHhcCCCEEEEeCChHhHHHHH
Confidence 468888764 577778889999999999987654321111 0 1234455677788788999999944333334566
Q ss_pred HHHHHcCC
Q 002211 259 DVAQRLGM 266 (953)
Q Consensus 259 ~~a~~~g~ 266 (953)
+++.+.|.
T Consensus 122 ~~~~~~~i 129 (342)
T 1jx6_A 122 EHVLDSTN 129 (342)
T ss_dssp HHHHHHCS
T ss_pred HHHHHcCC
Confidence 77777664
No 317
>2qmw_A PDT, prephenate dehydratase; APC85812, prephenate dehydratase (PDT), staphylococcus aureu aureus MU50, structural genomics, PSI-2; 2.30A {Staphylococcus aureus subsp} SCOP: c.94.1.1 d.58.18.3
Probab=45.97 E-value=57 Score=32.96 Aligned_cols=84 Identities=11% Similarity=-0.017 Sum_probs=59.6
Q ss_pred CCeEEEE--eCchHHHHHHHhhCCCccceEeCCCHHHHHHHHHcCCcEEEEccc---------hhHHHHHhcCcceEEeC
Q 002211 712 NDRVGYQ--VGSFAENYLIEELSIPKSRLVALGSPEEYAIALENRTVAAVVDER---------PYIDLFLSDHCQFSVRG 780 (953)
Q Consensus 712 ~~~ig~~--~~s~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~g~~~a~~~~~---------~~~~~~~~~~~~l~~~~ 780 (953)
..+|+++ .|+|.+.-..+.++.....++++.+.++.++++.+|++|..+... ..++.+.. .++++++
T Consensus 3 ~~~iaylGp~Gtfs~~Aa~~~f~~~~~~~~~~~s~~~v~~aV~~g~~d~gVvPiENS~~G~V~~t~DlL~~--~~l~I~g 80 (267)
T 2qmw_A 3 AMQLYYLGPKGTFSYLACRQYFSENEATFQPKSNLFEVIKAVADDDTSIGVVPIENSIEGTINIVADALAQ--QDVFAHG 80 (267)
T ss_dssp -CEEEEECSTTSHHHHHHHHHCCTTSSEEEEESSHHHHHHHHHHCSSEEEEEEEESCSSSCSHHHHHHHHT--TSSEEEE
T ss_pred ccEEEEECCCCcHHHHHHHHhhccCCceEEEcCCHHHHHHHHHcCCCCEEEEEehhcCCCChHHHHHHhhc--CCcEEEE
Confidence 3468886 688888776554432223488999999999999999998776632 12333333 3699999
Q ss_pred CccccCccEEEecCCCc
Q 002211 781 QEFTKSGWGFAFPRDSP 797 (953)
Q Consensus 781 ~~~~~~~~~~~~~k~sp 797 (953)
+.+.+...++...+|..
T Consensus 81 E~~l~I~h~Ll~~~g~~ 97 (267)
T 2qmw_A 81 EIRLDINFALYGNGTDS 97 (267)
T ss_dssp EEEEECCEEEECCSSCC
T ss_pred EEEEEeeeEEEecCCCC
Confidence 98888888888877743
No 318
>3szp_A Transcriptional regulator, LYSR family; winged helix-turn helix, DNA-binding, transcription factor; 2.20A {Vibrio cholerae} PDB: 3t1b_B
Probab=45.93 E-value=11 Score=38.36 Aligned_cols=72 Identities=4% Similarity=-0.105 Sum_probs=43.6
Q ss_pred ceEeCCCHHHHHHHHHcCCcEEEEccchhHHHHHhcCcceEEeCC--ccccCccEEEecCCCcchHHHHHHHHhhh
Q 002211 737 RLVALGSPEEYAIALENRTVAAVVDERPYIDLFLSDHCQFSVRGQ--EFTKSGWGFAFPRDSPLAIDMSTAILTLS 810 (953)
Q Consensus 737 ~~~~~~~~~~~~~~l~~g~~~a~~~~~~~~~~~~~~~~~l~~~~~--~~~~~~~~~~~~k~spl~~~~n~~i~~l~ 810 (953)
.....++.+.....+..|.--+++-+.....+. .. ..+..+.. ......++++.+++.+....+...+..+.
T Consensus 213 ~~~~~~~~~~~~~~v~~g~Giailp~~~~~~~~-~~-~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~f~~~l~ 286 (291)
T 3szp_A 213 GRFQASALNVVRSACSEGLGITLMPDVMLREFL-ED-GSLVQVLSDWSSNPRDIYMLYNHKDHQPEKVRLFIDFVI 286 (291)
T ss_dssp CSEEESSHHHHHHHHHTTCCEEEEEGGGTHHHH-HT-TTSEECCTTCBCCCEEEEEEECCGGGCCHHHHHHHHHHH
T ss_pred CceEECcHHHHHHHHHcCCcEEEccHHHHHHHH-hC-CCeEEecCCccCCCCcEEEEECCCCCCCHHHHHHHHHHH
Confidence 345678889999999988777777655444443 22 23333322 22245677888888666555555554443
No 319
>3kbq_A Protein TA0487; structural genomics, CINA, protein structure initiative, MCS midwest center for structural genomics, unknown function; 2.00A {Thermoplasma acidophilum}
Probab=45.51 E-value=47 Score=31.07 Aligned_cols=62 Identities=11% Similarity=0.134 Sum_probs=42.7
Q ss_pred cEEEEEEecCcc--c---cchHHHHHHHHHhcCcEEEEEEecCCCCCCChHHHHHHHHHHhcCCceEEEEEc
Q 002211 183 GEVIAIFNDDDQ--G---RNGVTALGDKLAEIRCKISYKSALPPDQSVTETDVRNELVKVRMMEARVIVVHG 249 (953)
Q Consensus 183 ~~vaii~~d~~~--g---~~~~~~l~~~l~~~g~~v~~~~~~~~~~~~~~~d~~~~l~~i~~~~~~vii~~~ 249 (953)
-++++|...|+- | ......+.+.+++.|+++.....++.+ .+.+...+++..+. +|+||..+
T Consensus 4 ~~v~IistGdEll~G~i~DtN~~~l~~~L~~~G~~v~~~~iv~Dd----~~~I~~~l~~a~~~-~DlVittG 70 (172)
T 3kbq_A 4 KNASVITVGNEILKGRTVNTNAAFIGNFLTYHGYQVRRGFVVMDD----LDEIGWAFRVALEV-SDLVVSSG 70 (172)
T ss_dssp CEEEEEEECHHHHTTSSCCHHHHHHHHHHHHTTCEEEEEEEECSC----HHHHHHHHHHHHHH-CSEEEEES
T ss_pred CEEEEEEEcccccCCcEEeHHHHHHHHHHHHCCCEEEEEEEeCCC----HHHHHHHHHHHHhc-CCEEEEcC
Confidence 467777755431 2 234567888888889988887777765 67777777776543 78887765
No 320
>2pju_A Propionate catabolism operon regulatory protein; structural genomics, PRPR, transcriptional regulation, PSI- 2, protein structure initiative; 2.10A {Escherichia coli} SCOP: c.92.3.1
Probab=45.10 E-value=1.2e+02 Score=29.71 Aligned_cols=135 Identities=17% Similarity=0.237 Sum_probs=82.1
Q ss_pred EEEEEecCCCChHHHHHHHHHHHhc-CcEEEEccCChhhHHHHHHhhhhCCCcEEEeecCCCCCCCCCCCcEEEccCChH
Q 002211 89 LSITMHDAKFNGFLSIMGALQFMET-DTLAIVGPQSAVMAHVLSHLANELQVPLLSFTALDPTLSPLQYPFFVQTAPNDL 167 (953)
Q Consensus 89 l~l~~~D~~~~~~~a~~~a~~li~~-~v~aiiGp~~S~~a~av~~v~~~~~vP~Is~~at~~~ls~~~~p~~fr~~p~d~ 167 (953)
..+.+.| ++-..++..+++++.+ ++.+||.-.. ++. -+-+..++|+|... .+..
T Consensus 39 ~~I~vi~--~~le~av~~a~~~~~~~~~dVIISRGg--ta~---~Lr~~~~iPVV~I~------------------vs~~ 93 (225)
T 2pju_A 39 ANITPIQ--LGFEKAVTYIRKKLANERCDAIIAAGS--NGA---YLKSRLSVPVILIK------------------PSGY 93 (225)
T ss_dssp CEEEEEC--CCHHHHHHHHHHHTTTSCCSEEEEEHH--HHH---HHHTTCSSCEEEEC------------------CCHH
T ss_pred ceEEEec--CcHHHHHHHHHHHHhcCCCeEEEeCCh--HHH---HHHhhCCCCEEEec------------------CCHH
Confidence 3344544 3356788888888775 6999996322 222 23345689999742 1223
Q ss_pred HHHHHHHHHHHHcCCcEEEEEEecCccccchHHHHHHHHHhcCcEEEEEEecCCCCCCChHHHHHHHHHHhcCCceEEEE
Q 002211 168 YLMSAIAEMVSYFGWGEVIAIFNDDDQGRNGVTALGDKLAEIRCKISYKSALPPDQSVTETDVRNELVKVRMMEARVIVV 247 (953)
Q Consensus 168 ~~~~ai~~~l~~~~w~~vaii~~d~~~g~~~~~~l~~~l~~~g~~v~~~~~~~~~~~~~~~d~~~~l~~i~~~~~~vii~ 247 (953)
...+++... +.++ ++++++...+.. ...+.+.+.+ |.++.... +. +.++....+.++++.+.++||-
T Consensus 94 Dil~aL~~a-~~~~-~kIavVg~~~~~--~~~~~i~~ll---~~~i~~~~-~~-----~~ee~~~~i~~l~~~G~~vVVG 160 (225)
T 2pju_A 94 DVLQFLAKA-GKLT-SSIGVVTYQETI--PALVAFQKTF---NLRLDQRS-YI-----TEEDARGQINELKANGTEAVVG 160 (225)
T ss_dssp HHHHHHHHT-TCTT-SCEEEEEESSCC--HHHHHHHHHH---TCCEEEEE-ES-----SHHHHHHHHHHHHHTTCCEEEE
T ss_pred HHHHHHHHH-HhhC-CcEEEEeCchhh--hHHHHHHHHh---CCceEEEE-eC-----CHHHHHHHHHHHHHCCCCEEEC
Confidence 334444443 3344 589998755431 2344455544 55554322 22 3779999999999999999886
Q ss_pred EcchhhHHHHHHHHHHcCCC
Q 002211 248 HGYSRTGLMVFDVAQRLGMM 267 (953)
Q Consensus 248 ~~~~~~~~~~~~~a~~~g~~ 267 (953)
.+. ..+.|++.||.
T Consensus 161 ~~~------~~~~A~~~Gl~ 174 (225)
T 2pju_A 161 AGL------ITDLAEEAGMT 174 (225)
T ss_dssp SHH------HHHHHHHTTSE
T ss_pred CHH------HHHHHHHcCCc
Confidence 543 35667888874
No 321
>2fep_A Catabolite control protein A; CCPA, transcriptional regulator; HET: SEP; 2.45A {Bacillus subtilis} PDB: 2nzu_G* 1sxh_A 1sxi_A 1sxg_A* 2nzv_G* 2oen_G*
Probab=44.67 E-value=59 Score=33.01 Aligned_cols=78 Identities=15% Similarity=-0.024 Sum_probs=54.6
Q ss_pred cEEEEEEec--CccccchHHHHHHHHHhcCcEEEEEEecCCCCCCChHHHHHHHHHHhcCCceEEEEEcchhhHHHHHHH
Q 002211 183 GEVIAIFND--DDQGRNGVTALGDKLAEIRCKISYKSALPPDQSVTETDVRNELVKVRMMEARVIVVHGYSRTGLMVFDV 260 (953)
Q Consensus 183 ~~vaii~~d--~~~g~~~~~~l~~~l~~~g~~v~~~~~~~~~~~~~~~d~~~~l~~i~~~~~~vii~~~~~~~~~~~~~~ 260 (953)
+.|+++..+ ++|.......+.+++++.|..+.... .. .+.......++.+.+.++|.||+...... ...++.
T Consensus 17 ~~Igvi~~~~~~~~~~~~~~gi~~~a~~~g~~~~~~~---~~--~~~~~~~~~~~~l~~~~vdgiIi~~~~~~-~~~~~~ 90 (289)
T 2fep_A 17 TTVGVIIPDISSIFYSELARGIEDIATMYKYNIILSN---SD--QNMEKELHLLNTMLGKQVDGIVFMGGNIT-DEHVAE 90 (289)
T ss_dssp CEEEEEESCTTSHHHHHHHHHHHHHHHHTTCEEEEEE---CT--TCHHHHHHHHHHHHHTTCSEEEECCSCCC-HHHHHH
T ss_pred CeEEEEeCCCCCchHHHHHHHHHHHHHHcCCEEEEEe---CC--CCHHHHHHHHHHHHhCCCCEEEEecCCCC-HHHHHH
Confidence 578888864 67778889999999999999876532 11 12445566788888889999998764322 234566
Q ss_pred HHHcCC
Q 002211 261 AQRLGM 266 (953)
Q Consensus 261 a~~~g~ 266 (953)
+.+.|.
T Consensus 91 l~~~~i 96 (289)
T 2fep_A 91 FKRSPV 96 (289)
T ss_dssp HHHSSS
T ss_pred HHhcCC
Confidence 666664
No 322
>3isp_A HTH-type transcriptional regulator RV1985C/MT2039; ROD shaped structure, DNA binding domain, regulatory domain, DNA-binding; 2.70A {Mycobacterium tuberculosis}
Probab=44.45 E-value=82 Score=31.97 Aligned_cols=47 Identities=19% Similarity=0.085 Sum_probs=32.4
Q ss_pred CChHHHHHHHHcCceeEEEecEEEecCccceeeccccceecceEEEEeccc
Q 002211 543 PTYSELINQITTGVFDAAVGDIAIVTNRTKAVDFTQPYIESGLVVVAPVRK 593 (953)
Q Consensus 543 ~~~~~~i~~l~~g~~Di~~~~~~~t~~r~~~vdft~p~~~~~~~~~v~~~~ 593 (953)
++..++++.|.+|++|+++..-. .....+. ..++....++++++...
T Consensus 127 ~~~~~~~~~l~~g~~D~~i~~~~---~~~~~l~-~~~l~~~~~~~v~~~~~ 173 (303)
T 3isp_A 127 EDQDHSARLLREGVAMGAVTTER---NPVPGCR-VHPLGEMRYLPVASRPF 173 (303)
T ss_dssp CCHHHHHHHHHTTSCSEEEESCC---SCCTTEE-EEEEEEEEEEEEECHHH
T ss_pred cChHHHHHHHHcCcceEEEecCC---CCCCCeE-EEEccceeEEEEecchH
Confidence 55788999999999999876322 1112222 46777888888887654
No 323
>2h3h_A Sugar ABC transporter, periplasmic sugar-binding protein; glucose binding protein, periplasmic binding protein, GBP; HET: BGC; 1.70A {Thermotoga maritima} PDB: 2qvc_A* 3c6q_B*
Probab=44.33 E-value=47 Score=34.26 Aligned_cols=79 Identities=8% Similarity=-0.040 Sum_probs=53.6
Q ss_pred EEEEEEecCc-cccchHHHHHHHHHhcCcEEEEEEecCCCCCCChHHHHHHHHHHhcCCceEEEEEcch-hhHHHHHHHH
Q 002211 184 EVIAIFNDDD-QGRNGVTALGDKLAEIRCKISYKSALPPDQSVTETDVRNELVKVRMMEARVIVVHGYS-RTGLMVFDVA 261 (953)
Q Consensus 184 ~vaii~~d~~-~g~~~~~~l~~~l~~~g~~v~~~~~~~~~~~~~~~d~~~~l~~i~~~~~~vii~~~~~-~~~~~~~~~a 261 (953)
+|+++..+.. |.....+.+.+++++.|.++.... +.. .+.......++++...++|.||+.... ......++++
T Consensus 3 ~Ig~i~~~~~~~~~~~~~gi~~~~~~~g~~~~~~~--~~~--~~~~~~~~~i~~l~~~~vdgiIi~~~~~~~~~~~~~~~ 78 (313)
T 2h3h_A 3 TIGVIGKSVHPYWSQVEQGVKAAGKALGVDTKFFV--PQK--EDINAQLQMLESFIAEGVNGIAIAPSDPTAVIPTIKKA 78 (313)
T ss_dssp EEEEECSCSSHHHHHHHHHHHHHHHHHTCEEEEEC--CSS--SCHHHHHHHHHHHHHTTCSEEEECCSSTTTTHHHHHHH
T ss_pred EEEEEeCCCcHHHHHHHHHHHHHHHHcCCEEEEEC--CCC--CCHHHHHHHHHHHHHcCCCEEEEeCCChHHHHHHHHHH
Confidence 5777764321 777888899999999998876532 111 224455667788878899999986543 3334567777
Q ss_pred HHcCC
Q 002211 262 QRLGM 266 (953)
Q Consensus 262 ~~~g~ 266 (953)
.+.|.
T Consensus 79 ~~~~i 83 (313)
T 2h3h_A 79 LEMGI 83 (313)
T ss_dssp HHTTC
T ss_pred HHCCC
Confidence 77664
No 324
>3k4h_A Putative transcriptional regulator; structural genomics, protein structure INI NEW YORK structural genomix research consortium; HET: MAL; 2.80A {Bacillus cytotoxicus nvh 391-98}
Probab=44.27 E-value=43 Score=33.96 Aligned_cols=80 Identities=4% Similarity=-0.095 Sum_probs=56.2
Q ss_pred CCcEEEEEEec-------CccccchHHHHHHHHHhcCcEEEEEEecCCCCCCChHHHHHHHHHHhcCCceEEEEEcchhh
Q 002211 181 GWGEVIAIFND-------DDQGRNGVTALGDKLAEIRCKISYKSALPPDQSVTETDVRNELVKVRMMEARVIVVHGYSRT 253 (953)
Q Consensus 181 ~w~~vaii~~d-------~~~g~~~~~~l~~~l~~~g~~v~~~~~~~~~~~~~~~d~~~~l~~i~~~~~~vii~~~~~~~ 253 (953)
+-+.|+++..+ +.|.......+.+++++.|..+... ... .+.......++.+.+.+.|.||+......
T Consensus 7 ~~~~Igvi~~~~~~~~~~~~~~~~~~~gi~~~a~~~g~~~~~~---~~~--~~~~~~~~~~~~~~~~~vdgiIi~~~~~~ 81 (292)
T 3k4h_A 7 TTKTLGLVMPSSASKAFQNPFFPEVIRGISSFAHVEGYALYMS---TGE--TEEEIFNGVVKMVQGRQIGGIILLYSREN 81 (292)
T ss_dssp CCCEEEEECSSCHHHHTTSTHHHHHHHHHHHHHHHTTCEEEEC---CCC--SHHHHHHHHHHHHHTTCCCEEEESCCBTT
T ss_pred CCCEEEEEecCCccccccCHHHHHHHHHHHHHHHHcCCEEEEE---eCC--CCHHHHHHHHHHHHcCCCCEEEEeCCCCC
Confidence 44678888765 5677788999999999999887652 222 22344566778888889999998654432
Q ss_pred HHHHHHHHHHcCC
Q 002211 254 GLMVFDVAQRLGM 266 (953)
Q Consensus 254 ~~~~~~~a~~~g~ 266 (953)
...++.+.+.|+
T Consensus 82 -~~~~~~l~~~~i 93 (292)
T 3k4h_A 82 -DRIIQYLHEQNF 93 (292)
T ss_dssp -CHHHHHHHHTTC
T ss_pred -hHHHHHHHHCCC
Confidence 256777777775
No 325
>2fvy_A D-galactose-binding periplasmic protein; periplasmic binding protien, hinge, chemotaxis, transport,; HET: BGC; 0.92A {Escherichia coli} SCOP: c.93.1.1 PDB: 1glg_A* 2fw0_A* 2gbp_A* 2qw1_A* 2hph_A* 2ipn_A* 2ipm_A* 2ipl_A* 1gca_A* 1gcg_A 3ga5_A* 3gbp_A*
Probab=44.15 E-value=65 Score=32.91 Aligned_cols=79 Identities=6% Similarity=0.035 Sum_probs=55.3
Q ss_pred cEEEEEEe--cCccccchHHHHHHHHHhcCc-EEEEEEecCCCCCCChHHHHHHHHHHhcCCceEEEEEcchh-hHHHHH
Q 002211 183 GEVIAIFN--DDDQGRNGVTALGDKLAEIRC-KISYKSALPPDQSVTETDVRNELVKVRMMEARVIVVHGYSR-TGLMVF 258 (953)
Q Consensus 183 ~~vaii~~--d~~~g~~~~~~l~~~l~~~g~-~v~~~~~~~~~~~~~~~d~~~~l~~i~~~~~~vii~~~~~~-~~~~~~ 258 (953)
++|+++.. +++|.......+.+++++.|. .+..... . .+.......++.+...++|.||+..... .....+
T Consensus 3 ~~Igvi~~~~~~~~~~~~~~gi~~~a~~~g~~~~~~~~~---~--~~~~~~~~~~~~~~~~~vdgiii~~~~~~~~~~~~ 77 (309)
T 2fvy_A 3 TRIGVTIYKYDDNFMSVVRKAIEQDAKAAPDVQLLMNDS---Q--NDQSKQNDQIDVLLAKGVKALAINLVDPAAAGTVI 77 (309)
T ss_dssp EEEEEEESCTTSHHHHHHHHHHHHHHHTCTTEEEEEEEC---T--TCHHHHHHHHHHHHHTTCSEEEECCSSGGGHHHHH
T ss_pred cEEEEEeccCCcHHHHHHHHHHHHHHHhcCCeEEEEecC---C--CCHHHHHHHHHHHHHcCCCEEEEeCCCcchhHHHH
Confidence 46888875 466778889999999999997 7765321 1 1244455677888888999999876443 345667
Q ss_pred HHHHHcCC
Q 002211 259 DVAQRLGM 266 (953)
Q Consensus 259 ~~a~~~g~ 266 (953)
+++.+.|+
T Consensus 78 ~~~~~~~i 85 (309)
T 2fvy_A 78 EKARGQNV 85 (309)
T ss_dssp HHHHTTTC
T ss_pred HHHHHCCC
Confidence 77777664
No 326
>3huu_A Transcription regulator like protein; PSI-II, NYSGXRC, LAC I, STR genomics, protein structure initiative; 1.95A {Staphylococcus haemolyticus}
Probab=43.99 E-value=35 Score=35.08 Aligned_cols=86 Identities=1% Similarity=-0.124 Sum_probs=56.5
Q ss_pred HHHHHcCCcEEEEEEec-------CccccchHHHHHHHHHhcCcEEEEEEecCCCCCCChHHHHHHHHHHhcCCceEEEE
Q 002211 175 EMVSYFGWGEVIAIFND-------DDQGRNGVTALGDKLAEIRCKISYKSALPPDQSVTETDVRNELVKVRMMEARVIVV 247 (953)
Q Consensus 175 ~~l~~~~w~~vaii~~d-------~~~g~~~~~~l~~~l~~~g~~v~~~~~~~~~~~~~~~d~~~~l~~i~~~~~~vii~ 247 (953)
.-++.-.-+.|+++..+ +.|.......+.+++++.|..+... ... .+.......++.+.+.+.|.||+
T Consensus 15 r~L~~~~~~~Igvi~~~~~~~~~~~~~~~~~~~gi~~~a~~~g~~~~~~---~~~--~~~~~~~~~~~~l~~~~vdgiIi 89 (305)
T 3huu_A 15 RTLITNKTLTIGLIQKSSAPEIRQNPFNSDVLNGINQACNVRGYSTRMT---VSE--NSGDLYHEVKTMIQSKSVDGFIL 89 (305)
T ss_dssp ------CCCEEEEECSCCSHHHHTSHHHHHHHHHHHHHHHHHTCEEEEC---CCS--SHHHHHHHHHHHHHTTCCSEEEE
T ss_pred HHhhhCCCCEEEEEeCCCccccccCcHHHHHHHHHHHHHHHCCCEEEEE---eCC--CChHHHHHHHHHHHhCCCCEEEE
Confidence 33444455789999866 5677788899999999999987652 222 12334466778888899999998
Q ss_pred EcchhhHHHHHHHHHHcCC
Q 002211 248 HGYSRTGLMVFDVAQRLGM 266 (953)
Q Consensus 248 ~~~~~~~~~~~~~a~~~g~ 266 (953)
...... ...++.+.+.|+
T Consensus 90 ~~~~~~-~~~~~~l~~~~i 107 (305)
T 3huu_A 90 LYSLKD-DPIEHLLNEFKV 107 (305)
T ss_dssp SSCBTT-CHHHHHHHHTTC
T ss_pred eCCcCC-cHHHHHHHHcCC
Confidence 754432 256677777665
No 327
>3i42_A Response regulator receiver domain protein (CHEY- like); structural genomics, PSI-2, protein structure initiative; 2.15A {Methylobacillus flagellatus KT} SCOP: c.23.1.0
Probab=43.92 E-value=96 Score=26.28 Aligned_cols=57 Identities=11% Similarity=0.153 Sum_probs=40.7
Q ss_pred chHHHHHHHHHhcCcEEEEEEecCCCCCCChHHHHHHHHHHhcCCceEEEEEcc--hhhHHHHHHHHHHc
Q 002211 197 NGVTALGDKLAEIRCKISYKSALPPDQSVTETDVRNELVKVRMMEARVIVVHGY--SRTGLMVFDVAQRL 264 (953)
Q Consensus 197 ~~~~~l~~~l~~~g~~v~~~~~~~~~~~~~~~d~~~~l~~i~~~~~~vii~~~~--~~~~~~~~~~a~~~ 264 (953)
.....+.+.+++.|..|... .+....+..+++..+|+|++... ..++..+++++++.
T Consensus 14 ~~~~~l~~~L~~~g~~v~~~-----------~~~~~a~~~l~~~~~dlii~D~~l~~~~g~~~~~~l~~~ 72 (127)
T 3i42_A 14 AAAETFKELLEMLGFQADYV-----------MSGTDALHAMSTRGYDAVFIDLNLPDTSGLALVKQLRAL 72 (127)
T ss_dssp HHHHHHHHHHHHTTEEEEEE-----------SSHHHHHHHHHHSCCSEEEEESBCSSSBHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHcCCCEEEE-----------CCHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHhh
Confidence 45677788888888765431 12345566677788999999754 45688899999886
No 328
>3sds_A Ornithine carbamoyltransferase, mitochondrial; structural genomics, seattle structural genomics center for infectious disease, ssgcid; 2.80A {Coccidioides immitis}
Probab=43.67 E-value=3.1e+02 Score=28.78 Aligned_cols=132 Identities=16% Similarity=0.210 Sum_probs=78.6
Q ss_pred EEEeEEEecCCCchhHHHHHHHHHHHHHhcCCCCCCCcEEEEEEecCCCChHHHHHHHHHHHhc--CcEEEEccCChhhH
Q 002211 50 LNVGAIFSFGTVNGQVSRIAMKAAQDDINSDPRVLGGRKLSITMHDAKFNGFLSIMGALQFMET--DTLAIVGPQSAVMA 127 (953)
Q Consensus 50 i~IG~l~~~~~~~g~~~~~a~~lAve~iN~~g~il~g~~l~l~~~D~~~~~~~a~~~a~~li~~--~v~aiiGp~~S~~a 127 (953)
-.|+.+|--.+. ..+.+++.|+.++ +|..+.+-..|++-.-.+.+.-+.+-++. .++++=.+...
T Consensus 67 k~va~lF~e~ST---RTR~SFE~A~~~L-------Gg~~i~l~~~~s~l~kgEsl~DTarvLs~~~D~IviR~~~~~--- 133 (353)
T 3sds_A 67 KTVAMMFSKRST---RTRVSTEGAVVKM-------GGHPMFLGKDDIQLGVNESLYDTSVVISSMVSCIVARVGPHS--- 133 (353)
T ss_dssp CEEEEEESSCCH---HHHHHHHHHHHHT-------TCEEEEECTTTC--CCSSCHHHHHHHHHTSCSEEEEECSSHH---
T ss_pred CEEEEEecCCch---hHHHHHHHHHHHc-------CCeEEecCCccccccCCccHHHHHHHHHHhcCEEEEEeCChH---
Confidence 468888887663 6789999999996 34455442223322222344444455555 44444454322
Q ss_pred HHHHHhhhhCCCcEEEeecCCCCCCCCCCCcEEEccCChHHHHHHHHHH---HHHcCC----------------cEEEEE
Q 002211 128 HVLSHLANELQVPLLSFTALDPTLSPLQYPFFVQTAPNDLYLMSAIAEM---VSYFGW----------------GEVIAI 188 (953)
Q Consensus 128 ~av~~v~~~~~vP~Is~~at~~~ls~~~~p~~fr~~p~d~~~~~ai~~~---l~~~~w----------------~~vaii 188 (953)
.+..+++..+||+|.-+. + ...| .++++++ .+++|. .+|+++
T Consensus 134 -~~~~lA~~s~vPVINag~-d-----~~HP------------tQaLaDl~TI~E~~G~~~~~~~~~~~~~~l~glkva~v 194 (353)
T 3sds_A 134 -DIANLAKHSSVPVINALC-D-----TFHP------------LQAIADFLTIHESFASQSATHGTHPSSLGLEGLKIAWV 194 (353)
T ss_dssp -HHHHHHHHCSSCEEEEEC-S-----SCCH------------HHHHHHHHHHHHHTC--------CTTCCSCTTCEEEEE
T ss_pred -HHHHHHhhCCCCEEECCC-C-----CCCc------------HHHHHHHHHHHHHhCCCcccccccccccccCCCEEEEE
Confidence 345677788999998542 2 1223 3556666 355553 467766
Q ss_pred EecCccccchHHHHHHHHHhcCcEEEEEE
Q 002211 189 FNDDDQGRNGVTALGDKLAEIRCKISYKS 217 (953)
Q Consensus 189 ~~d~~~g~~~~~~l~~~l~~~g~~v~~~~ 217 (953)
.+- ......+...+...|.+|....
T Consensus 195 GD~----~nva~Sl~~~l~~lG~~v~~~~ 219 (353)
T 3sds_A 195 GDA----NNVLFDLAIAATKMGVNVAVAT 219 (353)
T ss_dssp SCC----CHHHHHHHHHHHHTTCEEEEEC
T ss_pred CCC----chHHHHHHHHHHHcCCEEEEEC
Confidence 532 3588888899999998877643
No 329
>3l4e_A Uncharacterized peptidase LMO0363; hypothetical protein LMO0363, csgid, similar to peptidase E, hydrolase, protease, serine protease; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=43.64 E-value=47 Score=32.13 Aligned_cols=97 Identities=15% Similarity=0.134 Sum_probs=55.6
Q ss_pred HHHHHHHHHcCCcEEEEEEecCc--cccchHHHHHHHHHhcCcEEEEEEecCCCCCCChHHHHHHHHHHhcCCceEEEEE
Q 002211 171 SAIAEMVSYFGWGEVIAIFNDDD--QGRNGVTALGDKLAEIRCKISYKSALPPDQSVTETDVRNELVKVRMMEARVIVVH 248 (953)
Q Consensus 171 ~ai~~~l~~~~w~~vaii~~d~~--~g~~~~~~l~~~l~~~g~~v~~~~~~~~~~~~~~~d~~~~l~~i~~~~~~vii~~ 248 (953)
..+.+++..++-++|++|-.... -.....+.+.+++++.|.++........ +.+++...+. ++|+|++.
T Consensus 16 ~~~~~f~~~~~~~~i~~Ip~As~~~~~~~~~~s~~~a~~~lG~~v~~~~i~~~----~~~~~~~~l~-----~ad~I~l~ 86 (206)
T 3l4e_A 16 PLFTEFESNLQGKTVTFIPTASTVEEVTFYVEAGKKALESLGLLVEELDIATE----SLGEITTKLR-----KNDFIYVT 86 (206)
T ss_dssp HHHHHHSCCCTTCEEEEECGGGGGCSCCHHHHHHHHHHHHTTCEEEECCTTTS----CHHHHHHHHH-----HSSEEEEC
T ss_pred HHHHHHHHHcCCCEEEEECCCCCCCCHHHHHHHHHHHHHHcCCeEEEEEecCC----ChHHHHHHHH-----hCCEEEEC
Confidence 33445555555689998852211 1134678889999999997654221111 2445544443 37888887
Q ss_pred cchhhHHHHHHHHHHcCCCC-------CceEEEEeCc
Q 002211 249 GYSRTGLMVFDVAQRLGMMD-------SGYVWIATTW 278 (953)
Q Consensus 249 ~~~~~~~~~~~~a~~~g~~~-------~~~~wi~~~~ 278 (953)
+ .+...+++.+++.|+.. .|..++++..
T Consensus 87 G--G~~~~l~~~L~~~gl~~~l~~~~~~G~p~~G~sA 121 (206)
T 3l4e_A 87 G--GNTFFLLQELKRTGADKLILEEIAAGKLYIGESA 121 (206)
T ss_dssp C--SCHHHHHHHHHHHTHHHHHHHHHHTTCEEEEETH
T ss_pred C--CCHHHHHHHHHHCChHHHHHHHHHcCCeEEEECH
Confidence 6 33345666666666522 2446677663
No 330
>3mwb_A Prephenate dehydratase; L-Phe, PSI, MCSG, structural genomics, midwest center for ST genomics, protein structure initiative, lyase; HET: MSE PHE; 2.00A {Arthrobacter aurescens}
Probab=43.08 E-value=47 Score=34.45 Aligned_cols=85 Identities=7% Similarity=0.052 Sum_probs=58.1
Q ss_pred CCeEEEE--eCchHHHHHHHhhCCCccceEeCCCHHHHHHHHHcCCcEEEEccc--h-------hHHHHHhcCcceEEeC
Q 002211 712 NDRVGYQ--VGSFAENYLIEELSIPKSRLVALGSPEEYAIALENRTVAAVVDER--P-------YIDLFLSDHCQFSVRG 780 (953)
Q Consensus 712 ~~~ig~~--~~s~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~g~~~a~~~~~--~-------~~~~~~~~~~~l~~~~ 780 (953)
..+|+++ .|+|.+.-..+...-....++++.+.++.++++.+|++|.-+... . .++.+ .+..++++++
T Consensus 6 ~~~VaylGp~GtfS~~Aa~~~~~~~~~~~~p~~s~~~vf~aV~~g~~d~gVvPiENS~~G~V~~tlD~L-~~~~~l~Ivg 84 (313)
T 3mwb_A 6 AVTYTFLGPQGTFTEAALMQVPGAADATRIPCTNVNTALERVRAGEADAAMVPIENSVEGGVTATLDAI-ATGQELRIIR 84 (313)
T ss_dssp -CEEEEESSTTSHHHHHHTTSTTGGGSEEEEESSHHHHHHHHHTTSCSEEEEEEESCTTCCHHHHHHHT-TSSSCCEEEE
T ss_pred ccEEEEECCCCcHHHHHHHHHhhcCCccEEecCCHHHHHHHHHcCCCCeeEEEEeecCCCccHHHHHHh-hCCCCeEEEE
Confidence 4578887 688887766432221235678999999999999999987655421 1 22222 3345799999
Q ss_pred CccccCccEEEecCCCc
Q 002211 781 QEFTKSGWGFAFPRDSP 797 (953)
Q Consensus 781 ~~~~~~~~~~~~~k~sp 797 (953)
+.+.+....+...+|..
T Consensus 85 E~~l~I~h~Ll~~~g~~ 101 (313)
T 3mwb_A 85 EALVPITFVLVARPGVE 101 (313)
T ss_dssp EEEEECCCEEEECTTCC
T ss_pred EEEEeeeEEEEcCCCCC
Confidence 98888888887777643
No 331
>3lmz_A Putative sugar isomerase; structural genomics, joint center structural genomics, JCSG, protein structure initiative, PS isomerase; HET: MSE CIT PGE; 1.44A {Parabacteroides distasonis}
Probab=43.04 E-value=1e+02 Score=30.56 Aligned_cols=94 Identities=9% Similarity=-0.022 Sum_probs=67.6
Q ss_pred HHHHHHHHHHcCCcEEEEEEec--CccccchHHHHHHHHHhcCcEEEEEEecCCCCCCChHHHHHHHHHHhcCCceEEEE
Q 002211 170 MSAIAEMVSYFGWGEVIAIFND--DDQGRNGVTALGDKLAEIRCKISYKSALPPDQSVTETDVRNELVKVRMMEARVIVV 247 (953)
Q Consensus 170 ~~ai~~~l~~~~w~~vaii~~d--~~~g~~~~~~l~~~l~~~g~~v~~~~~~~~~~~~~~~d~~~~l~~i~~~~~~vii~ 247 (953)
....++.++..|.+.|=+.... .+......+.+++.+++.|+++........ .....+...+...+..+++.|++
T Consensus 32 ~~~~l~~~~~~G~~~vEl~~~~~~~~~~~~~~~~~~~~l~~~gl~i~~~~~~~~---~~~~~~~~~i~~A~~lGa~~v~~ 108 (257)
T 3lmz_A 32 LDTTLKTLERLDIHYLCIKDFHLPLNSTDEQIRAFHDKCAAHKVTGYAVGPIYM---KSEEEIDRAFDYAKRVGVKLIVG 108 (257)
T ss_dssp HHHHHHHHHHTTCCEEEECTTTSCTTCCHHHHHHHHHHHHHTTCEEEEEEEEEE---CSHHHHHHHHHHHHHHTCSEEEE
T ss_pred HHHHHHHHHHhCCCEEEEecccCCCCCCHHHHHHHHHHHHHcCCeEEEEecccc---CCHHHHHHHHHHHHHhCCCEEEe
Confidence 3567777888999988766431 122345578999999999999875443321 23677888888888889999888
Q ss_pred EcchhhHHHHHHHHHHcCC
Q 002211 248 HGYSRTGLMVFDVAQRLGM 266 (953)
Q Consensus 248 ~~~~~~~~~~~~~a~~~g~ 266 (953)
+........+...|.+.|+
T Consensus 109 ~p~~~~l~~l~~~a~~~gv 127 (257)
T 3lmz_A 109 VPNYELLPYVDKKVKEYDF 127 (257)
T ss_dssp EECGGGHHHHHHHHHHHTC
T ss_pred cCCHHHHHHHHHHHHHcCC
Confidence 7666677777788877775
No 332
>3okf_A 3-dehydroquinate synthase; structural genomics, center for structural genomics of infec diseases, csgid, NAD, lyase; HET: NAD; 2.50A {Vibrio cholerae o1 biovar eltor}
Probab=42.92 E-value=69 Score=34.44 Aligned_cols=97 Identities=16% Similarity=0.127 Sum_probs=63.0
Q ss_pred HHHHcCCcEEEEEEecCccccchHHHHHHHHHhcCcEEEEEEecCCCC-CCChHHHHHHHHHHhcCCc---eEEEEEcch
Q 002211 176 MVSYFGWGEVIAIFNDDDQGRNGVTALGDKLAEIRCKISYKSALPPDQ-SVTETDVRNELVKVRMMEA---RVIVVHGYS 251 (953)
Q Consensus 176 ~l~~~~w~~vaii~~d~~~g~~~~~~l~~~l~~~g~~v~~~~~~~~~~-~~~~~d~~~~l~~i~~~~~---~vii~~~~~ 251 (953)
+++.++.+++.+|+....+.. ..+.+.+.|++.|+++... .++.+. ..+.+.+...++.+++.++ |+||..+.+
T Consensus 56 ~l~~~~~~rvlIVtd~~v~~~-~~~~v~~~L~~~g~~~~~~-~~~~gE~~kt~~~v~~~~~~l~~~~~~R~d~IIAvGGG 133 (390)
T 3okf_A 56 LLSLSAKQKVVIVTNHTVAPL-YAPAIISLLDHIGCQHALL-ELPDGEQYKTLETFNTVMSFLLEHNYSRDVVVIALGGG 133 (390)
T ss_dssp GGCCCTTCEEEEEEETTTHHH-HHHHHHHHHHHHTCEEEEE-EECSSGGGCBHHHHHHHHHHHHHTTCCTTCEEEEEESH
T ss_pred HHHhcCCCEEEEEECCcHHHH-HHHHHHHHHHHcCCeEEEE-EECCCcCCchHHHHHHHHHHHHhcCCCcCcEEEEECCc
Confidence 444557799999987665543 7788899999999876432 233321 1346677888888887776 688877665
Q ss_pred --hhHHHHHHHHHHcCCCCCceEEEEeC
Q 002211 252 --RTGLMVFDVAQRLGMMDSGYVWIATT 277 (953)
Q Consensus 252 --~~~~~~~~~a~~~g~~~~~~~wi~~~ 277 (953)
-|...++......| ..++-|.|.
T Consensus 134 sv~D~ak~~Aa~~~rg---ip~I~IPTT 158 (390)
T 3okf_A 134 VIGDLVGFAAACYQRG---VDFIQIPTT 158 (390)
T ss_dssp HHHHHHHHHHHHBTTC---CEEEEEECS
T ss_pred HHhhHHHHHHHHhcCC---CCEEEeCCC
Confidence 55666665444444 455666665
No 333
>2jfz_A Glutamate racemase; cell WALL, isomerase, cell shape, peptidoglycan synthesis, peptidoglycan biosynthesis; HET: 003 DGL; 1.86A {Helicobacter pylori} PDB: 2jfx_A* 2jfy_A* 2w4i_A*
Probab=42.79 E-value=1.3e+02 Score=30.08 Aligned_cols=38 Identities=11% Similarity=0.154 Sum_probs=28.3
Q ss_pred HHHHHHhcCcEEEEccCChhhHHHHHHhhhhCCCcEEE
Q 002211 106 GALQFMETDTLAIVGPQSAVMAHVLSHLANELQVPLLS 143 (953)
Q Consensus 106 ~a~~li~~~v~aiiGp~~S~~a~av~~v~~~~~vP~Is 143 (953)
.+..|.+.++.+|+-+..+..+.++..+-+..++|+|.
T Consensus 54 ~~~~L~~~g~d~iviaCNTa~~~~~~~lr~~~~iPvig 91 (255)
T 2jfz_A 54 ALDFFKPHEIELLIVACNTASALALEEMQKYSKIPIVG 91 (255)
T ss_dssp HHHHHGGGCCSCEEECCHHHHHHTHHHHHHHCSSCEEC
T ss_pred HHHHHHHCCCCEEEEeCchhhHHHHHHHHHhCCCCEEe
Confidence 34445555999999887777655677777888999996
No 334
>2klu_A T-cell surface glycoprotein CD4; cell membrane, disulfide bond, HOST- virus interaction, immune response, immunoglobulin domain, lipoprotein; NMR {Homo sapiens}
Probab=41.92 E-value=65 Score=24.30 Aligned_cols=16 Identities=19% Similarity=0.243 Sum_probs=7.4
Q ss_pred HHHHHHHHHHHHHHHH
Q 002211 853 GIACFLALLAYFCLML 868 (953)
Q Consensus 853 ~~g~~lallvf~~e~~ 868 (953)
++|-++++++|..-.+
T Consensus 13 vlGg~~~lll~~glcI 28 (70)
T 2klu_A 13 VLGGVAGLLLFIGLGI 28 (70)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHhHHHHHHHHHHHHH
Confidence 4444455555544433
No 335
>3lte_A Response regulator; structural genomics, PSI, protein structure initiative, NYSG YORK structural genomix research consortium, nysgxrc; 2.00A {Bermanella marisrubri}
Probab=41.91 E-value=1.1e+02 Score=26.02 Aligned_cols=58 Identities=12% Similarity=0.094 Sum_probs=40.0
Q ss_pred chHHHHHHHHHhcCcEEEEEEecCCCCCCChHHHHHHHHHHhcCCceEEEEEcc--hhhHHHHHHHHHHcC
Q 002211 197 NGVTALGDKLAEIRCKISYKSALPPDQSVTETDVRNELVKVRMMEARVIVVHGY--SRTGLMVFDVAQRLG 265 (953)
Q Consensus 197 ~~~~~l~~~l~~~g~~v~~~~~~~~~~~~~~~d~~~~l~~i~~~~~~vii~~~~--~~~~~~~~~~a~~~g 265 (953)
.....+.+.+++.|..|... .+....+..+++..+|+|++... ..++..+++++++..
T Consensus 17 ~~~~~l~~~L~~~g~~v~~~-----------~~~~~a~~~l~~~~~dlii~d~~l~~~~g~~~~~~l~~~~ 76 (132)
T 3lte_A 17 AMAAAIERVLKRDHWQVEIA-----------HNGFDAGIKLSTFEPAIMTLDLSMPKLDGLDVIRSLRQNK 76 (132)
T ss_dssp HHHHHHHHHHHHTTCEEEEE-----------SSHHHHHHHHHHTCCSEEEEESCBTTBCHHHHHHHHHTTT
T ss_pred HHHHHHHHHHHHCCcEEEEe-----------CCHHHHHHHHHhcCCCEEEEecCCCCCCHHHHHHHHHhcC
Confidence 35666777788888776531 12344566677788999999755 346788888888765
No 336
>2qsx_A Putative transcriptional regulator, LYSR family; the putative transcriptional regulator, PSI-2, structure initiative, MCSG; 1.64A {Vibrio parahaemolyticus}
Probab=41.77 E-value=1.3e+02 Score=28.61 Aligned_cols=70 Identities=10% Similarity=-0.101 Sum_probs=41.0
Q ss_pred EeCCCHHHHHHHHHcCCcEEEEccchhHHHHHhcCcceEEeC-C-ccccCccEEEecCCCcchHHHHHHHHhhh
Q 002211 739 VALGSPEEYAIALENRTVAAVVDERPYIDLFLSDHCQFSVRG-Q-EFTKSGWGFAFPRDSPLAIDMSTAILTLS 810 (953)
Q Consensus 739 ~~~~~~~~~~~~l~~g~~~a~~~~~~~~~~~~~~~~~l~~~~-~-~~~~~~~~~~~~k~spl~~~~n~~i~~l~ 810 (953)
..+++.+...+++..|.--+++........ +.. .++..+. + ......++++.+++......+...+..+.
T Consensus 140 ~~~~~~~~~~~~v~~G~Gia~lp~~~~~~~-l~~-g~L~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~f~~~l~ 211 (218)
T 2qsx_A 140 VGFEHFYLACEAVRMEKGLALLPDFMAQFS-ILR-GDIQHIGNLKLHSGYGYYVVIPNFRLTSRKVALFHDWLK 211 (218)
T ss_dssp BCCSSHHHHHHHHHTTCCBEEEEHHHHHHH-HHT-TSEEEEEEEEEEEEEEEEEECCTTCTTCHHHHHHHHHHH
T ss_pred ceeccHHHHHHHHHhCCCEEEecHHHHHHH-HHC-CCccccCccccCCCceEEEEeccccCCCHHHHHHHHHHH
Confidence 457788889999998766666654433222 222 3343332 1 11234677888888776666666555443
No 337
>2ioy_A Periplasmic sugar-binding protein; ribose binding protein, thermophilic proteins; HET: RIP; 1.90A {Thermoanaerobacter tengcongensis}
Probab=41.56 E-value=65 Score=32.50 Aligned_cols=79 Identities=8% Similarity=0.061 Sum_probs=54.1
Q ss_pred cEEEEEEe--cCccccchHHHHHHHHHhcCcEEEEEEecCCCCCCChHHHHHHHHHHhcCCceEEEEEcch-hhHHHHHH
Q 002211 183 GEVIAIFN--DDDQGRNGVTALGDKLAEIRCKISYKSALPPDQSVTETDVRNELVKVRMMEARVIVVHGYS-RTGLMVFD 259 (953)
Q Consensus 183 ~~vaii~~--d~~~g~~~~~~l~~~l~~~g~~v~~~~~~~~~~~~~~~d~~~~l~~i~~~~~~vii~~~~~-~~~~~~~~ 259 (953)
+.|+++.. +++|.....+.+.+++++.|..+..... . .+...-...++.+.+.++|.||+.... ......++
T Consensus 2 ~~Igvi~~~~~~~f~~~~~~gi~~~~~~~g~~~~~~~~---~--~~~~~~~~~i~~l~~~~vdgiIi~~~~~~~~~~~~~ 76 (283)
T 2ioy_A 2 KTIGLVISTLNNPFFVTLKNGAEEKAKELGYKIIVEDS---Q--NDSSKELSNVEDLIQQKVDVLLINPVDSDAVVTAIK 76 (283)
T ss_dssp CEEEEEESCSSSHHHHHHHHHHHHHHHHHTCEEEEEEC---T--TCHHHHHHHHHHHHHTTCSEEEECCSSTTTTHHHHH
T ss_pred eEEEEEecCCCCHHHHHHHHHHHHHHHhcCcEEEEecC---C--CCHHHHHHHHHHHHHcCCCEEEEeCCchhhhHHHHH
Confidence 46788875 3667788889999999999998765421 1 123444556777778899999986543 33335667
Q ss_pred HHHHcCC
Q 002211 260 VAQRLGM 266 (953)
Q Consensus 260 ~a~~~g~ 266 (953)
.+.+.|.
T Consensus 77 ~~~~~~i 83 (283)
T 2ioy_A 77 EANSKNI 83 (283)
T ss_dssp HHHHTTC
T ss_pred HHHHCCC
Confidence 7777664
No 338
>1jlj_A Gephyrin; globular alpha/beta fold, structural protein; 1.60A {Homo sapiens} SCOP: c.57.1.1 PDB: 1ihc_A
Probab=41.51 E-value=70 Score=30.42 Aligned_cols=68 Identities=16% Similarity=0.116 Sum_probs=48.1
Q ss_pred HcCCcEEEEEEecCc-----cccchHHHHHHHHHh---cCcEEEEEEecCCCCCCChHHHHHHHHHHhc-CCceEEEEEc
Q 002211 179 YFGWGEVIAIFNDDD-----QGRNGVTALGDKLAE---IRCKISYKSALPPDQSVTETDVRNELVKVRM-MEARVIVVHG 249 (953)
Q Consensus 179 ~~~w~~vaii~~d~~-----~g~~~~~~l~~~l~~---~g~~v~~~~~~~~~~~~~~~d~~~~l~~i~~-~~~~vii~~~ 249 (953)
-+.--+|++|...|+ .-......+.+.+++ .|+++.....++.+ .+++...+.+..+ .++|+||..+
T Consensus 11 v~~~~rv~IistGdEl~~g~~~D~n~~~L~~~L~~~~~~G~~v~~~~iv~Dd----~~~I~~al~~a~~~~~~DlVIttG 86 (189)
T 1jlj_A 11 HDHQIRVGVLTVSDSCFRNLAEDRSGINLKDLVQDPSLLGGTISAYKIVPDE----IEEIKETLIDWCDEKELNLILTTG 86 (189)
T ss_dssp --CCCEEEEEEECHHHHTTSSCCHHHHHHHHHHHCTTTTCCEEEEEEEECSC----HHHHHHHHHHHHHTSCCSEEEEES
T ss_pred ccCCCEEEEEEECCccCCCcccchHHHHHHHHHhchhcCCcEEEEEEEeCCC----HHHHHHHHHHHhhcCCCCEEEEcC
Confidence 344467888876544 112345678888887 79999887777766 7888888888765 3799999875
Q ss_pred c
Q 002211 250 Y 250 (953)
Q Consensus 250 ~ 250 (953)
.
T Consensus 87 G 87 (189)
T 1jlj_A 87 G 87 (189)
T ss_dssp C
T ss_pred C
Confidence 4
No 339
>3fni_A Putative diflavin flavoprotein A 3; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium; 2.30A {Nostoc SP} PDB: 2klb_A
Probab=41.20 E-value=1.5e+02 Score=27.04 Aligned_cols=86 Identities=7% Similarity=-0.065 Sum_probs=49.2
Q ss_pred cEEEEEEecCcccc--chHHHHHHHHHhcCcEEEEEEecCCCCCCChH-HHHHHHHHHhcCCceEEEEEcch--hh--HH
Q 002211 183 GEVIAIFNDDDQGR--NGVTALGDKLAEIRCKISYKSALPPDQSVTET-DVRNELVKVRMMEARVIVVHGYS--RT--GL 255 (953)
Q Consensus 183 ~~vaii~~d~~~g~--~~~~~l~~~l~~~g~~v~~~~~~~~~~~~~~~-d~~~~l~~i~~~~~~vii~~~~~--~~--~~ 255 (953)
+++.|+|.. .+|. ..++.+.+.+++.|.++... +.. .. +....+..+. +.|.||+.++. .. ..
T Consensus 5 ~kv~IvY~S-~~GnT~~iA~~ia~~l~~~g~~v~~~---~~~----~~~~~~~~~~~~~--~~d~ii~Gspty~g~~p~~ 74 (159)
T 3fni_A 5 TSIGVFYVS-EYGYSDRLAQAIINGITKTGVGVDVV---DLG----AAVDLQELRELVG--RCTGLVIGMSPAASAASIQ 74 (159)
T ss_dssp CEEEEEECT-TSTTHHHHHHHHHHHHHHTTCEEEEE---ESS----SCCCHHHHHHHHH--TEEEEEEECCBTTSHHHHH
T ss_pred CEEEEEEEC-CChHHHHHHHHHHHHHHHCCCeEEEE---ECc----CcCCHHHHHHHHH--hCCEEEEEcCcCCCCccHH
Confidence 578899843 3554 46788889998888875432 222 22 3444455553 47888886553 22 23
Q ss_pred HHHHHHHHcCCCCCceEEEEeCc
Q 002211 256 MVFDVAQRLGMMDSGYVWIATTW 278 (953)
Q Consensus 256 ~~~~~a~~~g~~~~~~~wi~~~~ 278 (953)
.++.......+.+.....+++.+
T Consensus 75 ~~l~~l~~~~~~~k~va~fgs~g 97 (159)
T 3fni_A 75 GALSTILGSVNEKQAVGIFETGG 97 (159)
T ss_dssp HHHHHHHHHCCTTSEEEEECCSS
T ss_pred HHHHHHHhhcccCCEEEEEEcCC
Confidence 56666665555444333444433
No 340
>2iks_A DNA-binding transcriptional dual regulator; escherichia coli structural genomics, PSI-2, protein structure initiative; 1.85A {Escherichia coli}
Probab=39.74 E-value=38 Score=34.53 Aligned_cols=85 Identities=5% Similarity=-0.074 Sum_probs=55.2
Q ss_pred HHHcCCcEEEEEEec--CccccchHHHHHHHHHhcCcEEEEEEecCCCCCCChHHHHHHHHHHhcCCceEEEEEcchhhH
Q 002211 177 VSYFGWGEVIAIFND--DDQGRNGVTALGDKLAEIRCKISYKSALPPDQSVTETDVRNELVKVRMMEARVIVVHGYSRTG 254 (953)
Q Consensus 177 l~~~~w~~vaii~~d--~~~g~~~~~~l~~~l~~~g~~v~~~~~~~~~~~~~~~d~~~~l~~i~~~~~~vii~~~~~~~~ 254 (953)
++.-.-+.|+++..+ ++|.....+.+.+++++.|..+..... . .+...-...++.+...++|.||+.......
T Consensus 15 L~~~~~~~Ig~i~~~~~~~~~~~~~~gi~~~~~~~g~~~~~~~~---~--~~~~~~~~~~~~l~~~~vdgii~~~~~~~~ 89 (293)
T 2iks_A 15 LRAGRTRSIGLVIPDLENTSYTRIANYLERQARQRGYQLLIACS---E--DQPDNEMRCIEHLLQRQVDAIIVSTSLPPE 89 (293)
T ss_dssp ---CCCCEEEEEESCSCSHHHHHHHHHHHHHHHHTTCEEEEEEC---T--TCHHHHHHHHHHHHHTTCSEEEECCSSCTT
T ss_pred hhcCCCcEEEEEeCCCcCcHHHHHHHHHHHHHHHCCCEEEEEcC---C--CCHHHHHHHHHHHHHcCCCEEEEeCCCCCc
Confidence 344445689998854 667778889999999999998775321 1 124445567888888899999987654322
Q ss_pred HHHHHHHHHcCC
Q 002211 255 LMVFDVAQRLGM 266 (953)
Q Consensus 255 ~~~~~~a~~~g~ 266 (953)
..+++.+.+.|.
T Consensus 90 ~~~~~~~~~~~i 101 (293)
T 2iks_A 90 HPFYQRWANDPF 101 (293)
T ss_dssp CHHHHTTTTSSS
T ss_pred HHHHHHHHhCCC
Confidence 234555555453
No 341
>2dri_A D-ribose-binding protein; sugar transport; HET: RIP; 1.60A {Escherichia coli} SCOP: c.93.1.1 PDB: 1urp_A* 1ba2_A 1dbp_A* 1drj_A* 1drk_A* 2gx6_A*
Probab=39.60 E-value=77 Score=31.68 Aligned_cols=79 Identities=1% Similarity=0.029 Sum_probs=54.2
Q ss_pred cEEEEEEec--CccccchHHHHHHHHHhcCcEEEEEEecCCCCCCChHHHHHHHHHHhcCCceEEEEEcchh-hHHHHHH
Q 002211 183 GEVIAIFND--DDQGRNGVTALGDKLAEIRCKISYKSALPPDQSVTETDVRNELVKVRMMEARVIVVHGYSR-TGLMVFD 259 (953)
Q Consensus 183 ~~vaii~~d--~~~g~~~~~~l~~~l~~~g~~v~~~~~~~~~~~~~~~d~~~~l~~i~~~~~~vii~~~~~~-~~~~~~~ 259 (953)
+.|+++..+ ++|.......+.+++++.|..+..... .. +...-...++.+...++|.||+..... .....++
T Consensus 2 ~~Igvi~~~~~~~f~~~~~~gi~~~~~~~g~~~~~~~~--~~---~~~~~~~~i~~l~~~~vdgiIi~~~~~~~~~~~~~ 76 (271)
T 2dri_A 2 DTIALVVSTLNNPFFVSLKDGAQKEADKLGYNLVVLDS--QN---NPAKELANVQDLTVRGTKILLINPTDSDAVGNAVK 76 (271)
T ss_dssp CEEEEEESCSSSHHHHHHHHHHHHHHHHHTCEEEEEEC--TT---CHHHHHHHHHHHTTTTEEEEEECCSSTTTTHHHHH
T ss_pred cEEEEEecCCCCHHHHHHHHHHHHHHHHcCcEEEEeCC--CC---CHHHHHHHHHHHHHcCCCEEEEeCCChHHHHHHHH
Confidence 568888754 677788899999999999988765321 11 233445567778888999999865432 2235667
Q ss_pred HHHHcCC
Q 002211 260 VAQRLGM 266 (953)
Q Consensus 260 ~a~~~g~ 266 (953)
.+.+.|.
T Consensus 77 ~~~~~~i 83 (271)
T 2dri_A 77 MANQANI 83 (271)
T ss_dssp HHHHTTC
T ss_pred HHHHCCC
Confidence 7777664
No 342
>2qmx_A Prephenate dehydratase; APC86053, L-Phe inhibition, PDT, CHL tepidum TLS, structural genomics, PSI-2, protein structure initiative; HET: PHE; 2.30A {Chlorobium tepidum tls}
Probab=39.47 E-value=83 Score=32.05 Aligned_cols=79 Identities=16% Similarity=0.103 Sum_probs=58.8
Q ss_pred CCeEEEE--eCchHHHHHHHhhCCCccceEeCCCHHHHHHHHHcCCcEEEEccc---------hhHHHHHhcCcceEEeC
Q 002211 712 NDRVGYQ--VGSFAENYLIEELSIPKSRLVALGSPEEYAIALENRTVAAVVDER---------PYIDLFLSDHCQFSVRG 780 (953)
Q Consensus 712 ~~~ig~~--~~s~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~g~~~a~~~~~---------~~~~~~~~~~~~l~~~~ 780 (953)
+.+|+++ .|+|.+.-..+.+ .++++.+.++.++++.+|++|..+... ..++.+.. .++++++
T Consensus 6 ~~~iaylGp~Gtfs~~Aa~~~f-----~~~p~~s~~~vf~aV~~g~~d~gVvPiENS~~G~V~~t~DlL~~--~~l~I~g 78 (283)
T 2qmx_A 6 NWLIAYQGEPGAYSEIAALRFG-----EPLPCESFDDVFSAVTEQKADYAVIPIENSLGGSIHQNYDLLLR--RPVVILA 78 (283)
T ss_dssp CCEEEEESCTTSHHHHHHHHHS-----EEEEESCHHHHHHHHHTTSCSEEEEEEEESSSCBCHHHHHHHHH--SSEEEEE
T ss_pred CcEEEEECCCCCHHHHHHHHHh-----HhCcCCCHHHHHHHHHCCCCCEEEEeehhcCCCccHHHHHHhhc--CCcEEEE
Confidence 4578886 6888877664433 578999999999999999987666532 13344443 5799999
Q ss_pred CccccCccEEEecCCCc
Q 002211 781 QEFTKSGWGFAFPRDSP 797 (953)
Q Consensus 781 ~~~~~~~~~~~~~k~sp 797 (953)
+.+.+....+...+|..
T Consensus 79 E~~l~I~h~Ll~~~g~~ 95 (283)
T 2qmx_A 79 ETFVKVEHCLLGLPGAS 95 (283)
T ss_dssp EEEEECCCEEEECSSCC
T ss_pred EEEEeeeeeEecCCCCC
Confidence 98888888888877743
No 343
>3gyb_A Transcriptional regulators (LACI-family transcriptional regulatory protein); protein structure initiative II(PSI II), nysgxrc; 1.60A {Corynebacterium glutamicum}
Probab=39.35 E-value=57 Score=32.82 Aligned_cols=116 Identities=10% Similarity=0.021 Sum_probs=70.1
Q ss_pred EEeEEEecCCCchhHHHHHHHHHHHHHhcCCCCCCCcEEEEEEecCCCChHHHHHHHHHHHhc--CcEEEEccCChhhHH
Q 002211 51 NVGAIFSFGTVNGQVSRIAMKAAQDDINSDPRVLGGRKLSITMHDAKFNGFLSIMGALQFMET--DTLAIVGPQSAVMAH 128 (953)
Q Consensus 51 ~IG~l~~~~~~~g~~~~~a~~lAve~iN~~g~il~g~~l~l~~~D~~~~~~~a~~~a~~li~~--~v~aiiGp~~S~~a~ 128 (953)
+|+++...... ...-..|++-|+++.+ .++.........+...+.+.+.+++.. ++.||+.. +...+.
T Consensus 120 ~i~~i~~~~~~-~~~R~~gf~~~l~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ai~~~-~d~~a~ 189 (280)
T 3gyb_A 120 HIAHLRVGSGA-GLRRFESFEATMRAHG--------LEPLSNDYLGPAVEHAGYTETLALLKEHPEVTAIFSS-NDITAI 189 (280)
T ss_dssp SEEEECCSSHH-HHHHHHHHHHHHHHTT--------CCCEECCCCSCCCHHHHHHHHHHHHHHCTTCCEEEES-SHHHHH
T ss_pred eEEEEeCCCch-HHHHHHHHHHHHHHcC--------cCCCcccccCCCCHHHHHHHHHHHHhCCCCCCEEEEC-ChHHHH
Confidence 57777665443 5566788888887742 122222255566788888889998876 58999985 345555
Q ss_pred HHHHhhhhCC------CcEEEeecCCCCCCCCCCCcEEEccCChHHHHHHHHHHHH
Q 002211 129 VLSHLANELQ------VPLLSFTALDPTLSPLQYPFFVQTAPNDLYLMSAIAEMVS 178 (953)
Q Consensus 129 av~~v~~~~~------vP~Is~~at~~~ls~~~~p~~fr~~p~d~~~~~ai~~~l~ 178 (953)
.+...+.+.+ +.++++.... +.....|-+-.+..+...++...++++.
T Consensus 190 g~~~al~~~g~~vP~di~vvg~d~~~--~~~~~~p~lttv~~~~~~~g~~av~~l~ 243 (280)
T 3gyb_A 190 GALGAARELGLRVPEDLSIIGYDNTP--LAQTRLINLTTIDDNSIGVGYNAALLLL 243 (280)
T ss_dssp HHHHHHHHHTCCTTTTCEEEEESCCH--HHHSTTTCCCEEECCHHHHHHHHHHHHH
T ss_pred HHHHHHHHcCCCCCCeeEEEEECCch--HhhccCCCceEEecCHHHHHHHHHHHHH
Confidence 6666665554 3467665332 2222224344455566667777776643
No 344
>1jye_A Lactose operon repressor; gene regulation, protein stability, protein DNA-binding, transcription; 1.70A {Escherichia coli} SCOP: c.93.1.1 PDB: 1lbi_A 1lbg_A* 1lbh_A 1jyf_A 3edc_A 1efa_A* 1jwl_A* 2pe5_A* 1tlf_A* 2p9h_A* 2paf_A* 1cjg_A* 1l1m_A 1osl_A 2kei_A* 2kej_A* 2kek_A* 2bjc_A 1lqc_A 1lcc_A* ...
Probab=39.15 E-value=78 Score=33.23 Aligned_cols=65 Identities=3% Similarity=-0.068 Sum_probs=45.1
Q ss_pred CCcEEEEEEec--CccccchHHHHHHHHHhcCcEEEEEEecCCCCCCChHHHHHHHHHHhcCCceEEEEEc
Q 002211 181 GWGEVIAIFND--DDQGRNGVTALGDKLAEIRCKISYKSALPPDQSVTETDVRNELVKVRMMEARVIVVHG 249 (953)
Q Consensus 181 ~w~~vaii~~d--~~~g~~~~~~l~~~l~~~g~~v~~~~~~~~~~~~~~~d~~~~l~~i~~~~~~vii~~~ 249 (953)
.-+.|+++..+ +.|.......+.+++++.|..+..... . . ...+.....++.+...+.|.||+..
T Consensus 60 ~~~~Igvi~~~~~~~~~~~~~~gi~~~a~~~g~~~~~~~~-~-~--~~~~~~~~~l~~l~~~~vdGiIi~~ 126 (349)
T 1jye_A 60 QSLLIGVATSSLALHAPSQIVAAILSRADQLGASVVVSMV-E-R--SGVEACKTAVHNLLAQRVSGLIINY 126 (349)
T ss_dssp --CEEEEEESCTTSHHHHHHHHHHHHHHHHTTCEEEEEEC-C-S--SSHHHHHHHHHHHHTTTCSCEEEES
T ss_pred CCCEEEEEeCCCCcccHHHHHHHHHHHHHHcCCEEEEEeC-C-C--CcHHHHHHHHHHHHHCCCCEEEEec
Confidence 34678888864 567777888999999999998765321 1 1 1134445677888888999999874
No 345
>3spc_A Inward-rectifier K+ channel KIR2.2; PIP, membrane protein, lipid, receptor, metal transport; HET: P8P; 2.45A {Gallus gallus} PDB: 3jyc_A* 3spi_A* 3sph_A* 3spj_A 3spg_A*
Probab=38.91 E-value=40 Score=35.49 Aligned_cols=59 Identities=15% Similarity=0.127 Sum_probs=50.2
Q ss_pred ccchhhHHHHHHHhhccccC--C--cccchhHHHHHHHHHHHHHhhhhcccceeeeeeecccc
Q 002211 641 KQIVTVLWFSFSTMFFAHRE--N--TVSTLGRVVLIIWLFVVLIITSSYTASLTSILTVQQLS 699 (953)
Q Consensus 641 ~~~~~~~~~~~~~l~~~~~~--~--~~s~~~R~l~~~w~~~~lil~~~Yta~L~s~Lt~~~~~ 699 (953)
..+..++||++.++...|.. . |.++.++++..+-.+.++++.+.-++-+.+-+..|+..
T Consensus 93 ~sf~~af~fSv~T~TTvGYGd~~p~~~~~~~~~l~~~~~l~G~~l~a~~~giv~ak~srp~~r 155 (343)
T 3spc_A 93 NGFVAAFLFSIETQTTIGYGFRCVTEECPLAVFMVVVQSIVGCIIDSFMIGAIMAKMARPKKR 155 (343)
T ss_dssp CSHHHHHHHHHHHHSCCCCSSSEECSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCSCC
T ss_pred CCHHHHhheeeeeeEeecCCCccCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHhh
Confidence 46789999999999988755 2 45889999999999999999999999998888877643
No 346
>3hs3_A Ribose operon repressor; PSI-II, NYSGXRC, periplasmic binding protein, structural genomics, protein structure initiative; 1.60A {Lactobacillus acidophilus}
Probab=38.61 E-value=65 Score=32.40 Aligned_cols=68 Identities=6% Similarity=-0.002 Sum_probs=49.2
Q ss_pred HHHcCCcEEEEEEec--CccccchHHHHHHHHHhcCcE-EEEEEecCCCCCCChHHHHHHHHHHhcCCceEEEEEc
Q 002211 177 VSYFGWGEVIAIFND--DDQGRNGVTALGDKLAEIRCK-ISYKSALPPDQSVTETDVRNELVKVRMMEARVIVVHG 249 (953)
Q Consensus 177 l~~~~w~~vaii~~d--~~~g~~~~~~l~~~l~~~g~~-v~~~~~~~~~~~~~~~d~~~~l~~i~~~~~~vii~~~ 249 (953)
++.-.-+.|+++..+ ++|.......+.+++++.|.. +... ... .+...-...++.+.+.+.|.||+..
T Consensus 5 L~~~~~~~Igvi~~~~~~~~~~~~~~gi~~~a~~~g~~~~~~~---~~~--~~~~~~~~~~~~l~~~~vdgiIi~~ 75 (277)
T 3hs3_A 5 LYQKKSKMIGIIIPDLNNRFYAQIIDGIQEVIQKEGYTALISF---STN--SDVKKYQNAIINFENNNVDGIITSA 75 (277)
T ss_dssp ---CCCCEEEEEESCTTSHHHHHHHHHHHHHHHHTTCEEEEEE---CSS--CCHHHHHHHHHHHHHTTCSEEEEEC
T ss_pred hhcCCCCEEEEEeCCCCChhHHHHHHHHHHHHHHCCCCEEEEE---eCC--CChHHHHHHHHHHHhCCCCEEEEcc
Confidence 444455789999865 677888899999999999998 5542 222 2245556678888889999999987
No 347
>3gl9_A Response regulator; beta-sheet, surrounded by alpha helices, BOTH sides, signaling protein; HET: BFD; 1.80A {Thermotoga maritima} SCOP: c.23.1.0 PDB: 3dgf_C 3dge_C
Probab=37.70 E-value=1.8e+02 Score=24.37 Aligned_cols=58 Identities=14% Similarity=0.041 Sum_probs=39.8
Q ss_pred chHHHHHHHHHhcCcEEEEEEecCCCCCCChHHHHHHHHHHhcCCceEEEEEcc--hhhHHHHHHHHHHcC
Q 002211 197 NGVTALGDKLAEIRCKISYKSALPPDQSVTETDVRNELVKVRMMEARVIVVHGY--SRTGLMVFDVAQRLG 265 (953)
Q Consensus 197 ~~~~~l~~~l~~~g~~v~~~~~~~~~~~~~~~d~~~~l~~i~~~~~~vii~~~~--~~~~~~~~~~a~~~g 265 (953)
.....+...+++.|..+... . +....+..++...+|+|++... ..++..++++.++..
T Consensus 13 ~~~~~l~~~l~~~g~~v~~~---~--------~~~~al~~l~~~~~dlvllD~~~p~~~g~~~~~~l~~~~ 72 (122)
T 3gl9_A 13 VLRKIVSFNLKKEGYEVIEA---E--------NGQIALEKLSEFTPDLIVLXIMMPVMDGFTVLKKLQEKE 72 (122)
T ss_dssp HHHHHHHHHHHHTTCEEEEE---S--------SHHHHHHHHTTBCCSEEEECSCCSSSCHHHHHHHHHTST
T ss_pred HHHHHHHHHHHHCCcEEEEe---C--------CHHHHHHHHHhcCCCEEEEeccCCCCcHHHHHHHHHhcc
Confidence 35567777888888876521 1 2345677777788999999654 456778888887654
No 348
>2vpn_A Periplasmic substrate binding protein; ectoine, hydroxyectoine, trap-transporter, periplasmic binding protein, transport; HET: 4CS; 1.55A {Halomonas elongata} PDB: 2vpo_A* 3gyy_A
Probab=37.57 E-value=29 Score=36.26 Aligned_cols=88 Identities=10% Similarity=0.015 Sum_probs=55.1
Q ss_pred CCCCChHHhhhCCCeEEEEeCchHHHHHHHhhCCCccceEeCCCHHHHHHHHHcCCcEEEEccchhHHHH-HhcCcceEE
Q 002211 700 SPIKGIDTLMTSNDRVGYQVGSFAENYLIEELSIPKSRLVALGSPEEYAIALENRTVAAVVDERPYIDLF-LSDHCQFSV 778 (953)
Q Consensus 700 ~~I~sl~dL~~~~~~ig~~~~s~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~g~~~a~~~~~~~~~~~-~~~~~~l~~ 778 (953)
.+|++++||. |++|.+..+......+ +.++. ..++. ...|...+|++|.+|+.....+...-. ..+-.++..
T Consensus 130 ~pI~s~~Dlk--G~KiR~~~~~~~~~~~-~~lGa---~pv~m-~~~Evy~ALq~G~VDg~~~~~~~~~~~~~~ev~~y~~ 202 (316)
T 2vpn_A 130 EPITSPEDFD--NKKIRTMTNPLLAETY-KAFGA---TPTPL-PWGEVYGGLQTGIIDGQENPIFWIESGGLYEVSPNLT 202 (316)
T ss_dssp SCCCSGGGGT--TCEEEECSCHHHHHHH-HHHTC---EEEEC-CGGGHHHHHHHTSCSEEEEEHHHHHHTTGGGTCCEEE
T ss_pred CCCCChHHhC--CCEEEeCCCHHHHHHH-HHcCC---eeeec-CHHHHHHHHHcCCcceeeCCHHHHHhcCHHHhhhhhe
Confidence 6899999996 9999987666556666 45653 23333 678899999999999998654433111 112234433
Q ss_pred eCCccccCccEEEecCC
Q 002211 779 RGQEFTKSGWGFAFPRD 795 (953)
Q Consensus 779 ~~~~~~~~~~~~~~~k~ 795 (953)
.... ......++++++
T Consensus 203 ~~~~-~~~~~~~~~n~~ 218 (316)
T 2vpn_A 203 FTSH-GWFTTAMMANQD 218 (316)
T ss_dssp ECCC-CEEEEEEEEEHH
T ss_pred eccc-cccceEEEEcHH
Confidence 3222 123456666665
No 349
>1y80_A Predicted cobalamin binding protein; corrinoid, factor IIIM, methyl transferase, structural genomics, PSI, protein structure initiative; HET: B1M; 1.70A {Moorella thermoacetica}
Probab=37.56 E-value=1.4e+02 Score=28.75 Aligned_cols=87 Identities=11% Similarity=0.061 Sum_probs=56.6
Q ss_pred cEEEEEEecCccccchHHHHHHHHHhcCcEEEEEEecCCCCCCChHHHHHHHHHHhcCCceEEEEEcch----hhHHHHH
Q 002211 183 GEVIAIFNDDDQGRNGVTALGDKLAEIRCKISYKSALPPDQSVTETDVRNELVKVRMMEARVIVVHGYS----RTGLMVF 258 (953)
Q Consensus 183 ~~vaii~~d~~~g~~~~~~l~~~l~~~g~~v~~~~~~~~~~~~~~~d~~~~l~~i~~~~~~vii~~~~~----~~~~~~~ 258 (953)
.+|.+.....+.-.-+...+...++..|.+|.+-. .. .+. ...+..+++.+||+|.+.+.. .....++
T Consensus 89 ~~vll~~~~gd~H~iG~~~va~~l~~~G~~v~~LG---~~--vp~---~~l~~~~~~~~~d~v~lS~~~~~~~~~~~~~i 160 (210)
T 1y80_A 89 GKIVLGTVKGDLHDIGKNLVAMMLESGGFTVYNLG---VD--IEP---GKFVEAVKKYQPDIVGMSALLTTTMMNMKSTI 160 (210)
T ss_dssp CEEEEEEBTTCCCCHHHHHHHHHHHHTTCEEEECC---SS--BCH---HHHHHHHHHHCCSEEEEECCSGGGTHHHHHHH
T ss_pred CEEEEEeCCCcccHHHHHHHHHHHHHCCCEEEECC---CC--CCH---HHHHHHHHHcCCCEEEEeccccccHHHHHHHH
Confidence 46766666655555567778888899999987532 11 123 345566666789999998653 4577788
Q ss_pred HHHHHcCCCCCceEEEEeC
Q 002211 259 DVAQRLGMMDSGYVWIATT 277 (953)
Q Consensus 259 ~~a~~~g~~~~~~~wi~~~ 277 (953)
+++++.|....-.+++++.
T Consensus 161 ~~l~~~~~~~~~~v~vGG~ 179 (210)
T 1y80_A 161 DALIAAGLRDRVKVIVGGA 179 (210)
T ss_dssp HHHHHTTCGGGCEEEEEST
T ss_pred HHHHhcCCCCCCeEEEECC
Confidence 8888877642233555543
No 350
>3lua_A Response regulator receiver protein; two-component signal transduction system, histidine kinase, phosphorelay, receiver domain, nysgxrc; 2.40A {Clostridium thermocellum}
Probab=37.43 E-value=1.8e+02 Score=24.94 Aligned_cols=56 Identities=7% Similarity=-0.002 Sum_probs=40.6
Q ss_pred chHHHHHHHHHh-cCcEEEEEEecCCCCCCChHHHHHHHHHHhc-CCceEEEEEcc---hhhHHHHHHHHHH
Q 002211 197 NGVTALGDKLAE-IRCKISYKSALPPDQSVTETDVRNELVKVRM-MEARVIVVHGY---SRTGLMVFDVAQR 263 (953)
Q Consensus 197 ~~~~~l~~~l~~-~g~~v~~~~~~~~~~~~~~~d~~~~l~~i~~-~~~~vii~~~~---~~~~~~~~~~a~~ 263 (953)
.....+...+++ .|..|... .+....+..+++ ..+|+|++... ..++..+++++++
T Consensus 15 ~~~~~l~~~L~~~~~~~v~~~-----------~~~~~a~~~l~~~~~~dlvi~D~~l~~~~~g~~~~~~l~~ 75 (140)
T 3lua_A 15 YEREKTKIIFDNIGEYDFIEV-----------ENLKKFYSIFKDLDSITLIIMDIAFPVEKEGLEVLSAIRN 75 (140)
T ss_dssp HHHHHHHHHHHHHCCCEEEEE-----------CSHHHHHTTTTTCCCCSEEEECSCSSSHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhccCccEEEE-----------CCHHHHHHHHhcCCCCcEEEEeCCCCCCCcHHHHHHHHHh
Confidence 456677788887 78876531 233456777888 88999999765 4467888888888
No 351
>3ukm_A Potassium channel subfamily K member 1; membrane protein, eukaryotic, two-pore DO potassium channel, K2P channel, membrane; HET: UND; 3.40A {Homo sapiens}
Probab=37.27 E-value=18 Score=36.96 Aligned_cols=54 Identities=15% Similarity=0.212 Sum_probs=46.1
Q ss_pred ccchhhHHHHHHHhhccccC--CcccchhHHHHHHHHHHHHHhhhhcccceeeeee
Q 002211 641 KQIVTVLWFSFSTMFFAHRE--NTVSTLGRVVLIIWLFVVLIITSSYTASLTSILT 694 (953)
Q Consensus 641 ~~~~~~~~~~~~~l~~~~~~--~~~s~~~R~l~~~w~~~~lil~~~Yta~L~s~Lt 694 (953)
..+.+++||++.++...|.. .|.+..+|++.+++.++++.+...+.+++...+.
T Consensus 92 w~~~~a~yf~~~t~tTvGyGd~~P~T~~Gk~f~~~~~l~Gi~~~~~~~~~~~~~l~ 147 (280)
T 3ukm_A 92 WDFTSALFFASTVLSTTGYGHTVPLSDGGKAFCIIYSVIGIPFTLLFLTAVVQRIT 147 (280)
T ss_dssp SSHHHHHHHHHHHHTTCCCCSSCCCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CChhcchhheeeeeeccccCCcCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45788999999999988755 7999999999999999999999888887765443
No 352
>2rjo_A Twin-arginine translocation pathway signal protei; PSI-2, NYSGXRC, twin arginine translocation pathway signal P structural genomics; HET: GAL; 2.05A {Burkholderia phytofirmans}
Probab=37.06 E-value=67 Score=33.38 Aligned_cols=79 Identities=5% Similarity=-0.014 Sum_probs=54.9
Q ss_pred cEEEEEEe--cCccccchHHHHHHHHHhcCcEEEEEEecCCCCCCChHHHHHHHHHHhcCC--ceEEEEEcchhh-HHHH
Q 002211 183 GEVIAIFN--DDDQGRNGVTALGDKLAEIRCKISYKSALPPDQSVTETDVRNELVKVRMME--ARVIVVHGYSRT-GLMV 257 (953)
Q Consensus 183 ~~vaii~~--d~~~g~~~~~~l~~~l~~~g~~v~~~~~~~~~~~~~~~d~~~~l~~i~~~~--~~vii~~~~~~~-~~~~ 257 (953)
+.|+++.. +++|.......+.+++++.|..+..... . .+...-...++.+.+.+ +|.||+...... ....
T Consensus 6 ~~Igvi~~~~~~~~~~~~~~gi~~~a~~~g~~l~~~~~---~--~~~~~~~~~i~~l~~~~~~vdgiIi~~~~~~~~~~~ 80 (332)
T 2rjo_A 6 TTLACSFRSLTNPYYTAFNKGAQSFAKSVGLPYVPLTT---E--GSSEKGIADIRALLQKTGGNLVLNVDPNDSADARVI 80 (332)
T ss_dssp CEEEEEESCTTSHHHHHHHHHHHHHHHHHTCCEEEEEC---T--TCHHHHHHHHHHHHHHTTTCEEEEECCSSHHHHHHH
T ss_pred cEEEEEecCCCcHHHHHHHHHHHHHHHHcCCEEEEecC---C--CCHHHHHHHHHHHHHCCCCCCEEEEeCCCHHHHHHH
Confidence 57888885 4667778889999999999988765421 1 12444456677777778 999998765433 3456
Q ss_pred HHHHHHcCC
Q 002211 258 FDVAQRLGM 266 (953)
Q Consensus 258 ~~~a~~~g~ 266 (953)
++.+.+.|+
T Consensus 81 ~~~~~~~~i 89 (332)
T 2rjo_A 81 VEACSKAGA 89 (332)
T ss_dssp HHHHHHHTC
T ss_pred HHHHHHCCC
Confidence 777777664
No 353
>3t6k_A Response regulator receiver; flavodoxin-like, structural genomics, joint center for struc genomics, JCSG, protein structure initiative; HET: MSE; 1.86A {Chloroflexus aurantiacus} SCOP: c.23.1.0
Probab=36.99 E-value=2e+02 Score=24.76 Aligned_cols=58 Identities=7% Similarity=-0.001 Sum_probs=39.5
Q ss_pred chHHHHHHHHHhcCcEEEEEEecCCCCCCChHHHHHHHHHHhcCCceEEEEEcc--hhhHHHHHHHHHHcC
Q 002211 197 NGVTALGDKLAEIRCKISYKSALPPDQSVTETDVRNELVKVRMMEARVIVVHGY--SRTGLMVFDVAQRLG 265 (953)
Q Consensus 197 ~~~~~l~~~l~~~g~~v~~~~~~~~~~~~~~~d~~~~l~~i~~~~~~vii~~~~--~~~~~~~~~~a~~~g 265 (953)
.....+...+++.|..|.. .. +....+..+....+|+|++... ..++..++++.++..
T Consensus 15 ~~~~~l~~~L~~~g~~v~~---~~--------~~~~al~~~~~~~~dlvl~D~~lp~~~g~~~~~~lr~~~ 74 (136)
T 3t6k_A 15 TVAEMLELVLRGAGYEVRR---AA--------SGEEALQQIYKNLPDALICDVLLPGIDGYTLCKRVRQHP 74 (136)
T ss_dssp HHHHHHHHHHHHTTCEEEE---ES--------SHHHHHHHHHHSCCSEEEEESCCSSSCHHHHHHHHHHSG
T ss_pred HHHHHHHHHHHHCCCEEEE---eC--------CHHHHHHHHHhCCCCEEEEeCCCCCCCHHHHHHHHHcCC
Confidence 4566777788888877642 11 2334566677788999999755 346778888888743
No 354
>1sg6_A Pentafunctional AROM polypeptide; shikimate pathway, aromatic amino acid biosynthesis, DHQS, O form J, domain movement, cyclase, lyase; HET: NAD; 1.70A {Emericella nidulans} SCOP: e.22.1.1 PDB: 1nr5_A* 1nrx_A* 1nua_A 1nva_A* 1nvb_A* 1nvd_A* 1nve_A* 1nvf_A* 1dqs_A*
Probab=36.93 E-value=1.5e+02 Score=31.79 Aligned_cols=96 Identities=11% Similarity=0.061 Sum_probs=63.2
Q ss_pred HHHcCCcEEEEEEecCccccchHHHHHHHHHhc------CcEEEEEEecCCCC-CCChHHHHHHHHHHhcCC--c---eE
Q 002211 177 VSYFGWGEVIAIFNDDDQGRNGVTALGDKLAEI------RCKISYKSALPPDQ-SVTETDVRNELVKVRMME--A---RV 244 (953)
Q Consensus 177 l~~~~w~~vaii~~d~~~g~~~~~~l~~~l~~~------g~~v~~~~~~~~~~-~~~~~d~~~~l~~i~~~~--~---~v 244 (953)
++.++.+++.+|+....+.. ..+.+.+.+++. |+++.. ..++.+. ..+.+.+....+.+++.+ . |+
T Consensus 31 ~~~~~~~k~liVtd~~v~~~-~~~~v~~~L~~~~~~~~~g~~~~~-~~~~~gE~~k~~~~v~~~~~~~~~~~~~~~r~d~ 108 (393)
T 1sg6_A 31 ISDCSSTTYVLVTDTNIGSI-YTPSFEEAFRKRAAEITPSPRLLI-YNRPPGEVSKSRQTKADIEDWMLSQNPPCGRDTV 108 (393)
T ss_dssp HHHSCCSEEEEEEEHHHHHH-HHHHHHHHHHHHHHHSSSCCEEEE-EEECSSGGGSSHHHHHHHHHHHHTSSSCCCTTCE
T ss_pred HHhcCCCeEEEEECCcHHHH-HHHHHHHHHHhhhccccCCceeEE-EEeCCCCCCCCHHHHHHHHHHHHHcCCCCCCCCE
Confidence 46678899999986544332 567777777766 776642 3345431 134577788888888888 7 99
Q ss_pred EEEEcch--hhHHHHHHHHHHcCCCCCceEEEEeC
Q 002211 245 IVVHGYS--RTGLMVFDVAQRLGMMDSGYVWIATT 277 (953)
Q Consensus 245 ii~~~~~--~~~~~~~~~a~~~g~~~~~~~wi~~~ 277 (953)
||..+.+ -|...++......|+ .++-|.|.
T Consensus 109 iIalGGGsv~D~ak~~Aa~~~rgi---p~i~IPTT 140 (393)
T 1sg6_A 109 VIALGGGVIGDLTGFVASTYMRGV---RYVQVPTT 140 (393)
T ss_dssp EEEEESHHHHHHHHHHHHHGGGCC---EEEEEECS
T ss_pred EEEECCcHHHHHHHHHHHHhcCCC---CEEEECCc
Confidence 9977654 667777766555553 56666665
No 355
>3kjx_A Transcriptional regulator, LACI family; LACL family, protein structure initiative II(PSI II), NYSGXRC, structural genomics; 2.33A {Silicibacter pomeroyi}
Probab=36.71 E-value=95 Score=32.41 Aligned_cols=78 Identities=9% Similarity=0.059 Sum_probs=56.2
Q ss_pred cEEEEEEec--CccccchHHHHHHHHHhcCcEEEEEEecCCCCCCChHHHHHHHHHHhcCCceEEEEEcchhhHHHHHHH
Q 002211 183 GEVIAIFND--DDQGRNGVTALGDKLAEIRCKISYKSALPPDQSVTETDVRNELVKVRMMEARVIVVHGYSRTGLMVFDV 260 (953)
Q Consensus 183 ~~vaii~~d--~~~g~~~~~~l~~~l~~~g~~v~~~~~~~~~~~~~~~d~~~~l~~i~~~~~~vii~~~~~~~~~~~~~~ 260 (953)
+.|+++..+ ++|.....+.+.+++++.|..+.... .. .+.......++.+.+.+.|.||+....... ..++.
T Consensus 69 ~~Ig~i~~~~~~~~~~~~~~gi~~~a~~~g~~~~~~~-~~----~~~~~~~~~i~~l~~~~vdGiIi~~~~~~~-~~~~~ 142 (344)
T 3kjx_A 69 NLVAVIIPSLSNMVFPEVLTGINQVLEDTELQPVVGV-TD----YLPEKEEKVLYEMLSWRPSGVIIAGLEHSE-AARAM 142 (344)
T ss_dssp SEEEEEESCSSSSSHHHHHHHHHHHHTSSSSEEEEEE-CT----TCHHHHHHHHHHHHTTCCSEEEEECSCCCH-HHHHH
T ss_pred CEEEEEeCCCCcHHHHHHHHHHHHHHHHCCCEEEEEe-CC----CCHHHHHHHHHHHHhCCCCEEEEECCCCCH-HHHHH
Confidence 468888854 67788889999999999999886532 11 124555677888888899999997654332 56667
Q ss_pred HHHcCC
Q 002211 261 AQRLGM 266 (953)
Q Consensus 261 a~~~g~ 266 (953)
+.+.|+
T Consensus 143 l~~~~i 148 (344)
T 3kjx_A 143 LDAAGI 148 (344)
T ss_dssp HHHCSS
T ss_pred HHhCCC
Confidence 777664
No 356
>3h5o_A Transcriptional regulator GNTR; transcription regulator, GNTR,chromobacterium violaceum, PSI, SGX, DNA-binding; 2.30A {Chromobacterium violaceum}
Probab=36.46 E-value=86 Score=32.65 Aligned_cols=81 Identities=7% Similarity=0.017 Sum_probs=56.4
Q ss_pred cCCcEEEEEEec--CccccchHHHHHHHHHhcCcEEEEEEecCCCCCCChHHHHHHHHHHhcCCceEEEEEcchhhHHHH
Q 002211 180 FGWGEVIAIFND--DDQGRNGVTALGDKLAEIRCKISYKSALPPDQSVTETDVRNELVKVRMMEARVIVVHGYSRTGLMV 257 (953)
Q Consensus 180 ~~w~~vaii~~d--~~~g~~~~~~l~~~l~~~g~~v~~~~~~~~~~~~~~~d~~~~l~~i~~~~~~vii~~~~~~~~~~~ 257 (953)
-.-+.|+++..+ +.|.....+.+.+++++.|..+..... . .+...-...++.+.+.+.|.||+....... ..
T Consensus 60 ~~~~~Igvi~~~~~~~~~~~~~~gi~~~a~~~g~~~~~~~~-~----~~~~~~~~~~~~l~~~~vdGiIi~~~~~~~-~~ 133 (339)
T 3h5o_A 60 AKSRTVLVLIPSLANTVFLETLTGIETVLDAAGYQMLIGNS-H----YDAGQELQLLRAYLQHRPDGVLITGLSHAE-PF 133 (339)
T ss_dssp ---CEEEEEESCSTTCTTHHHHHHHHHHHHHTTCEEEEEEC-T----TCHHHHHHHHHHHHTTCCSEEEEECSCCCT-TH
T ss_pred CCCCEEEEEeCCCCCHHHHHHHHHHHHHHHHCCCEEEEEeC-C----CChHHHHHHHHHHHcCCCCEEEEeCCCCCH-HH
Confidence 344678988854 678888999999999999998765321 1 224555677888888999999987654322 45
Q ss_pred HHHHHHcCC
Q 002211 258 FDVAQRLGM 266 (953)
Q Consensus 258 ~~~a~~~g~ 266 (953)
++.+.+.|.
T Consensus 134 ~~~l~~~~i 142 (339)
T 3h5o_A 134 ERILSQHAL 142 (339)
T ss_dssp HHHHHHTTC
T ss_pred HHHHhcCCC
Confidence 666667664
No 357
>3out_A Glutamate racemase; structural genomics, center for structural genomics of infec diseases, csgid, MURI, cell envelope; HET: MSE DGL; 1.65A {Francisella tularensis subsp}
Probab=36.33 E-value=64 Score=32.66 Aligned_cols=58 Identities=10% Similarity=0.084 Sum_probs=38.9
Q ss_pred CCcEEEEEEecCC------CChHHH----HHHHHHHHhcCcEEEEccCChhhHHHHHHhhhhC-CCcEEE
Q 002211 85 GGRKLSITMHDAK------FNGFLS----IMGALQFMETDTLAIVGPQSAVMAHVLSHLANEL-QVPLLS 143 (953)
Q Consensus 85 ~g~~l~l~~~D~~------~~~~~a----~~~a~~li~~~v~aiiGp~~S~~a~av~~v~~~~-~vP~Is 143 (953)
|+..+.+ +.|+. .+.... .+.+..|.+.++.+|+=+..+..+.++..+-+.. ++|+|.
T Consensus 31 p~~~~iy-~~D~a~~PYG~~~~~~i~~~~~~~~~~L~~~g~~~iVIACNTa~~~al~~lr~~~~~iPvig 99 (268)
T 3out_A 31 PNEDIIY-FGDIARIPYGTKSRATIQKFAAQTAKFLIDQEVKAIIIACNTISAIAKDIVQEIAKAIPVID 99 (268)
T ss_dssp TTCCEEE-EECTTTCCCTTSCHHHHHHHHHHHHHHHHHTTCSEEEECCHHHHHHHHHHHHHHHTTSCEEE
T ss_pred CCCcEEE-ecCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCEEEEeCCChHHHHHHHHHHhcCCCCEEe
Confidence 5555554 46762 233333 3344556666999999987777776777788888 899996
No 358
>4a29_A Engineered retro-aldol enzyme RA95.0; de novo protein, engineered enzyme, retro-aldolase, directed evolution; HET: 3NK MLT; 1.10A {Synthetic construct} PDB: 4a2s_A* 4a2r_A* 3tc7_A 3tc6_A 3nl8_A* 3nxf_A* 3o6y_X 3ud6_A* 1igs_A 1juk_A 1jul_A* 3hoj_A 1a53_A* 1lbf_A* 1lbl_A* 3nyz_A 3nz1_A* 3uy7_A 3uxd_A* 3uxa_A* ...
Probab=36.16 E-value=1.1e+02 Score=30.47 Aligned_cols=85 Identities=9% Similarity=0.042 Sum_probs=61.1
Q ss_pred HHHHHHHcCCcEEEEEEecCccccchHHHHHHHHHhcCcEEEEEEecCCCCCCChHHHHHHHHHHhcCCceEEEEEcc--
Q 002211 173 IAEMVSYFGWGEVIAIFNDDDQGRNGVTALGDKLAEIRCKISYKSALPPDQSVTETDVRNELVKVRMMEARVIVVHGY-- 250 (953)
Q Consensus 173 i~~~l~~~~w~~vaii~~d~~~g~~~~~~l~~~l~~~g~~v~~~~~~~~~~~~~~~d~~~~l~~i~~~~~~vii~~~~-- 250 (953)
++++.+ -|..-+.|++ |..|..+..+.+.+.-+..++.|..+..+ .+ . -++.+.+..++|+|.+...
T Consensus 69 iA~~~~-~GA~aiSVLT-d~~~F~Gs~~~L~~vr~~v~lPvLrKDFi-id------~--yQI~eAr~~GADaILLI~a~L 137 (258)
T 4a29_A 69 YAKFME-RYAVGLSITT-EEKYFNGSYETLRKIASSVSIPILMSDFI-VK------E--SQIDDAYNLGADTVLLIVKIL 137 (258)
T ss_dssp HHHHHT-TTCSEEEEEC-CSTTTCCCHHHHHHHHTTCSSCEEEESCC-CS------H--HHHHHHHHHTCSEEEEEGGGS
T ss_pred HHHHHh-CCCeEEEEeC-CCCCCCCCHHHHHHHHHhcCCCEeecccc-cc------H--HHHHHHHHcCCCeeehHHhhc
Confidence 455554 4777777776 56677788888887766667777655433 22 1 3577778889999998755
Q ss_pred -hhhHHHHHHHHHHcCCCC
Q 002211 251 -SRTGLMVFDVAQRLGMMD 268 (953)
Q Consensus 251 -~~~~~~~~~~a~~~g~~~ 268 (953)
......+.+.|.++||..
T Consensus 138 ~~~~l~~l~~~A~~lGl~~ 156 (258)
T 4a29_A 138 TERELESLLEYARSYGMEP 156 (258)
T ss_dssp CHHHHHHHHHHHHHTTCCC
T ss_pred CHHHHHHHHHHHHHHhHHH
Confidence 356889999999999963
No 359
>1uuy_A CNX1, molybdopterin biosynthesis CNX1; chelatase, molybdenum cofactor biosynthesis; HET: MTE AMP; 1.45A {Arabidopsis thaliana} SCOP: c.57.1.1 PDB: 1o8q_A 1o8n_A 1o8o_A 1uux_A* 1eav_A
Probab=35.99 E-value=49 Score=30.74 Aligned_cols=64 Identities=16% Similarity=0.129 Sum_probs=44.2
Q ss_pred cEEEEEEecCcc--cc---chHHHHHHHHHhc-----CcEEEEEEecCCCCCCChHHHHHHHHHHhc-CCceEEEEEcc
Q 002211 183 GEVIAIFNDDDQ--GR---NGVTALGDKLAEI-----RCKISYKSALPPDQSVTETDVRNELVKVRM-MEARVIVVHGY 250 (953)
Q Consensus 183 ~~vaii~~d~~~--g~---~~~~~l~~~l~~~-----g~~v~~~~~~~~~~~~~~~d~~~~l~~i~~-~~~~vii~~~~ 250 (953)
-+|++|...|+- |+ .....+.+.+++. |.++.....++.+ .+.+...+++..+ .++|+||..+.
T Consensus 6 ~rv~IistGde~~~G~~~d~n~~~l~~~l~~~~~~~~G~~v~~~~iv~Dd----~~~i~~~l~~~~~~~~~DlVittGG 80 (167)
T 1uuy_A 6 YKVAILTVSDTVSAGAGPDRSGPRAVSVVDSSSEKLGGAKVVATAVVPDE----VERIKDILQKWSDVDEMDLILTLGG 80 (167)
T ss_dssp EEEEEEEECHHHHTTSSCCSHHHHHHHHHHHTTTTTTSEEEEEEEEECSC----HHHHHHHHHHHHHTSCCSEEEEESC
T ss_pred cEEEEEEECCcccCCCCccCcHHHHHHHHHhccccCCCcEEeEEEEcCCC----HHHHHHHHHHHHhcCCCCEEEECCC
Confidence 467888754432 11 1134566677766 8988887777766 7888888888765 57999999764
No 360
>3dmy_A Protein FDRA; predicted actyl-COA synthetase, nysgrc, PSI-II, STRU genomics, protein structure initiative; 2.07A {Escherichia coli}
Probab=35.69 E-value=4.8e+02 Score=28.67 Aligned_cols=145 Identities=14% Similarity=0.051 Sum_probs=81.0
Q ss_pred ChHHHHHHHHHHHhcCcEEEE--ccCChhhHHHHHHhhhhCCCcEEEeecCCCCCCCCCCCcEEEccCChHHHHHHHHHH
Q 002211 99 NGFLSIMGALQFMETDTLAIV--GPQSAVMAHVLSHLANELQVPLLSFTALDPTLSPLQYPFFVQTAPNDLYLMSAIAEM 176 (953)
Q Consensus 99 ~~~~a~~~a~~li~~~v~aii--Gp~~S~~a~av~~v~~~~~vP~Is~~at~~~ls~~~~p~~fr~~p~d~~~~~ai~~~ 176 (953)
.+..+...+.++.+.++-+|| +...-.....+..++.++++.+|.|.+ ....... +......
T Consensus 45 Pa~~v~~~v~e~~~~Gv~~viis~Gf~~~~~~~l~~~A~~~g~rliGPNc--G~~~~~~----~~~~f~~---------- 108 (480)
T 3dmy_A 45 AGEYAAELANQALDRNLNVMMFSDNVTLEDEIQLKTRAREKGLLVMGPDC--GTSMIAG----TPLAFAN---------- 108 (480)
T ss_dssp CHHHHHHHHHHHHHTTCEEEECCCCCCHHHHHHHHHHHHHTTCCEECSSC--CEEEETT----EEEESCC----------
T ss_pred CHHHHHHHHHHHHhcCCCEEEECCCCCHHHHHHHHHHHHHcCCEEEecCc--cccccCC----ccccccC----------
Confidence 344455556666666555443 111112233456677777777777655 2111111 1111111
Q ss_pred HHHcCCcEEEEEEecCccccchHHHHHHHHHhcCcEEEEEEecCCCC---CCChHHHHHHHHHHhc-CCceEEEEEcch-
Q 002211 177 VSYFGWGEVIAIFNDDDQGRNGVTALGDKLAEIRCKISYKSALPPDQ---SVTETDVRNELVKVRM-MEARVIVVHGYS- 251 (953)
Q Consensus 177 l~~~~w~~vaii~~d~~~g~~~~~~l~~~l~~~g~~v~~~~~~~~~~---~~~~~d~~~~l~~i~~-~~~~vii~~~~~- 251 (953)
.+.--+|++|..... +...+.+.+.+.|+-+.....+-... ...+.++...|.-+.+ .++++|+++..+
T Consensus 109 --~~~~G~vaivSqSGa----l~~~i~~~~~~~g~G~S~~Vs~Gn~~l~~~i~dv~~~D~l~~l~~Dp~T~~I~ly~E~~ 182 (480)
T 3dmy_A 109 --VMPEGNIGVIGASGT----GIQELCSQIALAGEGITHAIGLGGRDLSREVGGISALTALEMLSADEKSEVLAFVSKPP 182 (480)
T ss_dssp --CCCEEEEEEEESCSH----HHHHHHHHHHHTTCCEEEEEECCTTTTSTTTTTHHHHHHHHHHHTCTTCCEEEEEESCC
T ss_pred --CCCCCCEEEEeccHH----HHHHHHHHHHHcCCCceEEEEcCCCccccccCCCCHHHHHHHHhcCCCCCEEEEEEecC
Confidence 012357999987664 34556666777787766554443210 0145678888888876 578999998853
Q ss_pred --hhHHHHHHHHHHcC
Q 002211 252 --RTGLMVFDVAQRLG 265 (953)
Q Consensus 252 --~~~~~~~~~a~~~g 265 (953)
..+..|++.+++.+
T Consensus 183 ~e~~~~~f~~~ar~~~ 198 (480)
T 3dmy_A 183 AEAVRLKIVNAMKATG 198 (480)
T ss_dssp CHHHHHHHHHHHHHHC
T ss_pred CcHHHHHHHHHHHhCC
Confidence 23478898887643
No 361
>3d8u_A PURR transcriptional regulator; APC91343.1, vibrio parahaem RIMD 2210633, structural genomics, PSI-2, protein structure initiative; HET: MSE; 2.88A {Vibrio parahaemolyticus}
Probab=35.30 E-value=72 Score=31.86 Aligned_cols=78 Identities=8% Similarity=0.050 Sum_probs=53.7
Q ss_pred cEEEEEEec--CccccchHHHHHHHHHhcCcEEEEEEecCCCCCCChHHHHHHHHHHhcCCceEEEEEcchhhHHHHHHH
Q 002211 183 GEVIAIFND--DDQGRNGVTALGDKLAEIRCKISYKSALPPDQSVTETDVRNELVKVRMMEARVIVVHGYSRTGLMVFDV 260 (953)
Q Consensus 183 ~~vaii~~d--~~~g~~~~~~l~~~l~~~g~~v~~~~~~~~~~~~~~~d~~~~l~~i~~~~~~vii~~~~~~~~~~~~~~ 260 (953)
+.|+++..+ ++|.......+.+++++.|..+.... .. .+...-...++.+...+.|.||+...... ...++.
T Consensus 4 ~~Ig~i~~~~~~~~~~~~~~gi~~~~~~~g~~~~~~~---~~--~~~~~~~~~~~~l~~~~vdgii~~~~~~~-~~~~~~ 77 (275)
T 3d8u_A 4 YSIALIIPSLFEKACAHFLPSFQQALNKAGYQLLLGY---SD--YSIEQEEKLLSTFLESRPAGVVLFGSEHS-QRTHQL 77 (275)
T ss_dssp CEEEEEESCSSCHHHHHHHHHHHHHHHHTSCEECCEE---CT--TCHHHHHHHHHHHHTSCCCCEEEESSCCC-HHHHHH
T ss_pred eEEEEEeCCCccccHHHHHHHHHHHHHHCCCEEEEEc---CC--CCHHHHHHHHHHHHhcCCCEEEEeCCCCC-HHHHHH
Confidence 468888753 66777888999999999998875432 11 12444556788888889999988765332 245666
Q ss_pred HHHcCC
Q 002211 261 AQRLGM 266 (953)
Q Consensus 261 a~~~g~ 266 (953)
+.+.|.
T Consensus 78 l~~~~i 83 (275)
T 3d8u_A 78 LEASNT 83 (275)
T ss_dssp HHHHTC
T ss_pred HHhCCC
Confidence 666664
No 362
>3dnf_A ISPH, LYTB, 4-hydroxy-3-methylbut-2-ENYL diphosphate reductas; trilobal strucure, open alpha/beta, iron, iron-sulfur, isopr biosynthesis; 1.65A {Aquifex aeolicus}
Probab=35.15 E-value=64 Score=32.96 Aligned_cols=52 Identities=13% Similarity=0.170 Sum_probs=42.0
Q ss_pred EEEecCCCChHHHHHHHHH-HHhc-CcEEEEccCChhhHHHHHHhhhhCCCcEE
Q 002211 91 ITMHDAKFNGFLSIMGALQ-FMET-DTLAIVGPQSAVMAHVLSHLANELQVPLL 142 (953)
Q Consensus 91 l~~~D~~~~~~~a~~~a~~-li~~-~v~aiiGp~~S~~a~av~~v~~~~~vP~I 142 (953)
+...||=|+..+-.+.+.+ |..+ .+..|||+..|+.+.-+.+++.+.+.|-.
T Consensus 186 ~~~~~tIC~AT~~RQ~av~~la~~~D~miVVGg~nSSNT~rL~eia~~~~~~ty 239 (297)
T 3dnf_A 186 VKVINTICNATSLRQESVKKLAPEVDVMIIIGGKNSGNTRRLYYISKELNPNTY 239 (297)
T ss_dssp EEEECCCCSHHHHHHHHHHHHGGGSSEEEEESCTTCHHHHHHHHHHHHHCSSEE
T ss_pred CCCCCCccHHHHHHHHHHHHHHhhCCEEEEECCCCCchhHHHHHHHHhcCCCEE
Confidence 3478999988887775554 5554 78889999999999999999999888753
No 363
>2rgy_A Transcriptional regulator, LACI family; 11011J, NYSGXRC, transctiptional regulator, SUG binding protein, structural genomics, PSI-2; 2.05A {Burkholderia phymatum}
Probab=34.96 E-value=68 Score=32.54 Aligned_cols=79 Identities=9% Similarity=-0.061 Sum_probs=53.5
Q ss_pred CcEEEEEEe--cCccccchHHHHHHHHHhcCcEEEEEEecCCCCCCChHHHHH---HHHHHhcCCceEEEEEcchhhHHH
Q 002211 182 WGEVIAIFN--DDDQGRNGVTALGDKLAEIRCKISYKSALPPDQSVTETDVRN---ELVKVRMMEARVIVVHGYSRTGLM 256 (953)
Q Consensus 182 w~~vaii~~--d~~~g~~~~~~l~~~l~~~g~~v~~~~~~~~~~~~~~~d~~~---~l~~i~~~~~~vii~~~~~~~~~~ 256 (953)
-+.|+++.. +++|.......+.+++++.|..+..... ..+ ...-.. .++.+.+.+.|.||+...... ..
T Consensus 8 ~~~Ig~i~~~~~~~~~~~~~~gi~~~a~~~g~~~~~~~~-~~~----~~~~~~~~~~~~~l~~~~vdgiIi~~~~~~-~~ 81 (290)
T 2rgy_A 8 LGIIGLFVPTFFGSYYGTILKQTDLELRAVHRHVVVATG-CGE----STPREQALEAVRFLIGRDCDGVVVISHDLH-DE 81 (290)
T ss_dssp CCEEEEECSCSCSHHHHHHHHHHHHHHHHTTCEEEEECC-CSS----SCHHHHHHHHHHHHHHTTCSEEEECCSSSC-HH
T ss_pred CCeEEEEeCCCCCchHHHHHHHHHHHHHHCCCEEEEEeC-CCc----hhhhhhHHHHHHHHHhcCccEEEEecCCCC-HH
Confidence 357888875 3667788889999999999998765321 111 223344 677788889999998765433 34
Q ss_pred HHHHHHHcCC
Q 002211 257 VFDVAQRLGM 266 (953)
Q Consensus 257 ~~~~a~~~g~ 266 (953)
.++.+.+.|+
T Consensus 82 ~~~~l~~~~i 91 (290)
T 2rgy_A 82 DLDELHRMHP 91 (290)
T ss_dssp HHHHHHHHCS
T ss_pred HHHHHhhcCC
Confidence 5666666664
No 364
>3e3m_A Transcriptional regulator, LACI family; structural genomics, DNA-binding, plasmid, transcription regulation, PSI-2; 1.60A {Silicibacter pomeroyi}
Probab=34.77 E-value=1.1e+02 Score=31.98 Aligned_cols=81 Identities=11% Similarity=0.012 Sum_probs=56.0
Q ss_pred cCCcEEEEEEec--CccccchHHHHHHHHHhcCcEEEEEEecCCCCCCChHHHHHHHHHHhcCCceEEEEEcchhhHHHH
Q 002211 180 FGWGEVIAIFND--DDQGRNGVTALGDKLAEIRCKISYKSALPPDQSVTETDVRNELVKVRMMEARVIVVHGYSRTGLMV 257 (953)
Q Consensus 180 ~~w~~vaii~~d--~~~g~~~~~~l~~~l~~~g~~v~~~~~~~~~~~~~~~d~~~~l~~i~~~~~~vii~~~~~~~~~~~ 257 (953)
-.-+.|+++..+ +.|.......+.+++++.|..+..... . .+...-...++.+...+.|.||+....... ..
T Consensus 68 ~~~~~Igvi~~~~~~~~~~~~~~gi~~~a~~~g~~~~~~~~-~----~~~~~~~~~~~~l~~~~vdGiI~~~~~~~~-~~ 141 (355)
T 3e3m_A 68 KRSGFVGLLLPSLNNLHFAQTAQSLTDVLEQGGLQLLLGYT-A----YSPEREEQLVETMLRRRPEAMVLSYDGHTE-QT 141 (355)
T ss_dssp ---CEEEEEESCSBCHHHHHHHHHHHHHHHHTTCEEEEEEC-T----TCHHHHHHHHHHHHHTCCSEEEEECSCCCH-HH
T ss_pred CCCCEEEEEeCCCCchHHHHHHHHHHHHHHHCCCEEEEEeC-C----CChHHHHHHHHHHHhCCCCEEEEeCCCCCH-HH
Confidence 344678988854 567778889999999999998865421 1 124455677888888899999997654332 45
Q ss_pred HHHHHHcCC
Q 002211 258 FDVAQRLGM 266 (953)
Q Consensus 258 ~~~a~~~g~ 266 (953)
++.+.+.|+
T Consensus 142 ~~~l~~~~i 150 (355)
T 3e3m_A 142 IRLLQRASI 150 (355)
T ss_dssp HHHHHHCCS
T ss_pred HHHHHhCCC
Confidence 677777665
No 365
>2xwv_A Sialic acid-binding periplasmic protein SIAP; transport protein, trap, sugar transport; HET: SLB; 1.05A {Haemophilus influenzae} PDB: 2xxk_A* 2xa5_A* 2wyp_A* 2wx9_A* 2xwo_A* 2xwk_A* 2v4c_A* 2wyk_A* 2xwi_A* 3b50_A* 2cey_A 2cex_A
Probab=34.62 E-value=55 Score=34.02 Aligned_cols=60 Identities=12% Similarity=0.122 Sum_probs=44.4
Q ss_pred CCCCChHHhhhCCCeEEEEeCchHHHHHHHhhCCCccceEeCCCHHHHHHHHHcCCcEEEEccchhH
Q 002211 700 SPIKGIDTLMTSNDRVGYQVGSFAENYLIEELSIPKSRLVALGSPEEYAIALENRTVAAVVDERPYI 766 (953)
Q Consensus 700 ~~I~sl~dL~~~~~~ig~~~~s~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~g~~~a~~~~~~~~ 766 (953)
.+|++++||. |++|.+.........+ +.++.. .++. ...|...+|++|.+|+.....+.+
T Consensus 133 ~pI~s~~Dlk--GlKiRv~~~~~~~~~~-~alGa~---pv~m-~~~Evy~ALq~G~vDg~~~~~~~~ 192 (312)
T 2xwv_A 133 RAINSIADMK--GLKLRVPNAATNLAYA-KYVGAS---PTPM-AFSEVYLALQTNAVDGQENPLAAV 192 (312)
T ss_dssp SCCCSGGGGT--TCEEEECSCHHHHHHH-HHHTCE---EEEC-CGGGHHHHHHTTSSSEEEEEHHHH
T ss_pred CCcCCHHHhC--CCEEEeCCCHHHHHHH-HHcCCe---eeec-CHHHHHHHHHcCCcceEeccHHHH
Confidence 6899999996 9999987644344555 456532 2333 678899999999999998876655
No 366
>3grc_A Sensor protein, kinase; protein structure initiative II(PSI II), NYSGXRC, 11025B, structural genomics; 2.21A {Polaromonas SP}
Probab=34.62 E-value=1e+02 Score=26.70 Aligned_cols=57 Identities=12% Similarity=0.031 Sum_probs=39.6
Q ss_pred chHHHHHHHHHhcCcEEEEEEecCCCCCCChHHHHHHHHHHhcCCceEEEEEcc--hhhHHHHHHHHHHc
Q 002211 197 NGVTALGDKLAEIRCKISYKSALPPDQSVTETDVRNELVKVRMMEARVIVVHGY--SRTGLMVFDVAQRL 264 (953)
Q Consensus 197 ~~~~~l~~~l~~~g~~v~~~~~~~~~~~~~~~d~~~~l~~i~~~~~~vii~~~~--~~~~~~~~~~a~~~ 264 (953)
.....+.+.+++.|..|... .+....+..++...+|+|++... ..++..++++.++.
T Consensus 17 ~~~~~l~~~l~~~g~~v~~~-----------~~~~~a~~~l~~~~~dlvi~d~~l~~~~g~~~~~~l~~~ 75 (140)
T 3grc_A 17 DIARLLNLMLEKGGFDSDMV-----------HSAAQALEQVARRPYAAMTVDLNLPDQDGVSLIRALRRD 75 (140)
T ss_dssp HHHHHHHHHHHHTTCEEEEE-----------CSHHHHHHHHHHSCCSEEEECSCCSSSCHHHHHHHHHTS
T ss_pred HHHHHHHHHHHHCCCeEEEE-----------CCHHHHHHHHHhCCCCEEEEeCCCCCCCHHHHHHHHHhC
Confidence 45667778888888875431 12345566777788999999754 45678888888873
No 367
>3kht_A Response regulator; PSI-II, 11023K, structural genomics, Pro structure initiative, NEW YORK SGX research center for STRU genomics, nysgxrc; 2.10A {Hahella chejuensis} SCOP: c.23.1.0
Probab=34.55 E-value=2.2e+02 Score=24.50 Aligned_cols=72 Identities=13% Similarity=0.130 Sum_probs=44.6
Q ss_pred chHHHHHHHHHhcCcEEEEEEecCCCCCCChHHHHHHHHHHhcCCceEEEEEcc--hhhHHHHHHHHHHcCCCCCceEEE
Q 002211 197 NGVTALGDKLAEIRCKISYKSALPPDQSVTETDVRNELVKVRMMEARVIVVHGY--SRTGLMVFDVAQRLGMMDSGYVWI 274 (953)
Q Consensus 197 ~~~~~l~~~l~~~g~~v~~~~~~~~~~~~~~~d~~~~l~~i~~~~~~vii~~~~--~~~~~~~~~~a~~~g~~~~~~~wi 274 (953)
.....+.+.+++.|....... ..+....+..++...+|+|++... ..++..+++++++.+....-.+.+
T Consensus 16 ~~~~~l~~~L~~~~~~~~v~~---------~~~~~~a~~~l~~~~~dlii~D~~l~~~~g~~~~~~lr~~~~~~~~pii~ 86 (144)
T 3kht_A 16 DDIALIRRVLDRKDIHCQLEF---------VDNGAKALYQVQQAKYDLIILDIGLPIANGFEVMSAVRKPGANQHTPIVI 86 (144)
T ss_dssp HHHHHHHHHHHHTTCCEEEEE---------ESSHHHHHHHHTTCCCSEEEECTTCGGGCHHHHHHHHHSSSTTTTCCEEE
T ss_pred HHHHHHHHHHHhcCCCeeEEE---------ECCHHHHHHHhhcCCCCEEEEeCCCCCCCHHHHHHHHHhcccccCCCEEE
Confidence 456777888888876522111 123345677778888999999754 346788888888743222223444
Q ss_pred EeC
Q 002211 275 ATT 277 (953)
Q Consensus 275 ~~~ 277 (953)
.++
T Consensus 87 ~s~ 89 (144)
T 3kht_A 87 LTD 89 (144)
T ss_dssp EET
T ss_pred EeC
Confidence 443
No 368
>3ezx_A MMCP 1, monomethylamine corrinoid protein 1; N terminal all helical bundle C terminal rossmann fold, cobalt, metal-binding; HET: HCB; 2.56A {Methanosarcina barkeri}
Probab=34.33 E-value=1.8e+02 Score=28.05 Aligned_cols=87 Identities=14% Similarity=0.058 Sum_probs=56.0
Q ss_pred cEEEEEEecCccccchHHHHHHHHHhcCcEEEEEEecCCCCCCChHHHHHHHHHHhcCCceEEEE--Ecch----hhHHH
Q 002211 183 GEVIAIFNDDDQGRNGVTALGDKLAEIRCKISYKSALPPDQSVTETDVRNELVKVRMMEARVIVV--HGYS----RTGLM 256 (953)
Q Consensus 183 ~~vaii~~d~~~g~~~~~~l~~~l~~~g~~v~~~~~~~~~~~~~~~d~~~~l~~i~~~~~~vii~--~~~~----~~~~~ 256 (953)
.+|.+-....+.=.-+..-+...|+..|.+|.+-- .+ . .....+..+++.+||+|.+ .+.. .....
T Consensus 93 ~~vll~~v~gd~HdiG~~iv~~~l~~~G~~Vi~LG---~~--v---p~e~iv~~~~~~~~d~v~l~~S~l~~~~~~~~~~ 164 (215)
T 3ezx_A 93 GLAITFVAEGDIHDIGHRLVTTMLGANGFQIVDLG---VD--V---LNENVVEEAAKHKGEKVLLVGSALMTTSMLGQKD 164 (215)
T ss_dssp CEEEEEECTTCCCCHHHHHHHHHHHHTSCEEEECC---SS--C---CHHHHHHHHHHTTTSCEEEEEECSSHHHHTHHHH
T ss_pred CeEEEEeCCCChhHHHHHHHHHHHHHCCCeEEEcC---CC--C---CHHHHHHHHHHcCCCEEEEEchhcccCcHHHHHH
Confidence 35555555555444556777788899999987632 11 1 2345577778889999999 6543 34677
Q ss_pred HHHHHHHcCCCCCceEEEEeC
Q 002211 257 VFDVAQRLGMMDSGYVWIATT 277 (953)
Q Consensus 257 ~~~~a~~~g~~~~~~~wi~~~ 277 (953)
+++++++.|+...-.+|+++.
T Consensus 165 ~i~~l~~~~~~~~v~v~vGG~ 185 (215)
T 3ezx_A 165 LMDRLNEEKLRDSVKCMFGGA 185 (215)
T ss_dssp HHHHHHHTTCGGGSEEEEESS
T ss_pred HHHHHHHcCCCCCCEEEEECC
Confidence 888888888632233555543
No 369
>3egc_A Putative ribose operon repressor; structural genomics, unknown function, DNA-binding, transcri transcription regulation, PSI-2; 2.35A {Burkholderia thailandensis}
Probab=34.19 E-value=38 Score=34.47 Aligned_cols=80 Identities=5% Similarity=-0.103 Sum_probs=56.2
Q ss_pred CCcEEEEEEec--CccccchHHHHHHHHHhcCcEEEEEEecCCCCCCChHHHHHHHHHHhcCCceEEEEEcchhhHHHHH
Q 002211 181 GWGEVIAIFND--DDQGRNGVTALGDKLAEIRCKISYKSALPPDQSVTETDVRNELVKVRMMEARVIVVHGYSRTGLMVF 258 (953)
Q Consensus 181 ~w~~vaii~~d--~~~g~~~~~~l~~~l~~~g~~v~~~~~~~~~~~~~~~d~~~~l~~i~~~~~~vii~~~~~~~~~~~~ 258 (953)
.-+.|+++..+ +.|.......+.+++++.|..+..... . .+.......++.+.+.+.|.||+..... ....+
T Consensus 7 ~~~~Igvv~~~~~~~~~~~~~~gi~~~a~~~g~~~~~~~~-~----~~~~~~~~~~~~l~~~~vdgiIi~~~~~-~~~~~ 80 (291)
T 3egc_A 7 RSNVVGLIVSDIENVFFAEVASGVESEARHKGYSVLLANT-A----EDIVREREAVGQFFERRVDGLILAPSEG-EHDYL 80 (291)
T ss_dssp CCCEEEEEESCTTSHHHHHHHHHHHHHHHHTTCEEEEEEC-T----TCHHHHHHHHHHHHHTTCSEEEECCCSS-CCHHH
T ss_pred CCcEEEEEECCCcchHHHHHHHHHHHHHHHCCCEEEEEeC-C----CCHHHHHHHHHHHHHCCCCEEEEeCCCC-ChHHH
Confidence 34678888854 567778899999999999998875431 1 1245566778888889999999876543 33455
Q ss_pred HHHHHcCC
Q 002211 259 DVAQRLGM 266 (953)
Q Consensus 259 ~~a~~~g~ 266 (953)
+.+.+.|+
T Consensus 81 ~~~~~~~i 88 (291)
T 3egc_A 81 RTELPKTF 88 (291)
T ss_dssp HHSSCTTS
T ss_pred HHhhccCC
Confidence 55555553
No 370
>2nr1_A NR1 M2, M2; receptor, signal, postsynaptic membrane; NMR {Homo sapiens} SCOP: j.35.1.1
Probab=33.91 E-value=10 Score=22.91 Aligned_cols=19 Identities=16% Similarity=0.567 Sum_probs=14.7
Q ss_pred cccchhhHHHHHHHhhccc
Q 002211 640 RKQIVTVLWFSFSTMFFAH 658 (953)
Q Consensus 640 ~~~~~~~~~~~~~~l~~~~ 658 (953)
...+..++||+|++++..+
T Consensus 6 ~~~l~aa~wF~WGvllnsg 24 (27)
T 2nr1_A 6 ALTLSSAMWFSWGVLLNSG 24 (27)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred ceehhhhHHHhhHhheecc
Confidence 3457889999999998653
No 371
>3apt_A Methylenetetrahydrofolate reductase; TIM barrel, oxidoreductase, flavin; HET: FAD; 1.85A {Thermus thermophilus} PDB: 3apy_A* 1v93_A*
Probab=33.78 E-value=4.1e+02 Score=27.29 Aligned_cols=164 Identities=13% Similarity=0.084 Sum_probs=88.1
Q ss_pred EEEEEEecCCCC-hHHH-HHHHHHHHhcCcEEEE---ccCCh--hhHHHHHHhhhhCCCcEEEeecCCCCCCCCCCCcEE
Q 002211 88 KLSITMHDAKFN-GFLS-IMGALQFMETDTLAIV---GPQSA--VMAHVLSHLANELQVPLLSFTALDPTLSPLQYPFFV 160 (953)
Q Consensus 88 ~l~l~~~D~~~~-~~~a-~~~a~~li~~~v~aii---Gp~~S--~~a~av~~v~~~~~vP~Is~~at~~~ls~~~~p~~f 160 (953)
.+.+.+.=.+.. .... ...+.+|..-++.+|- |+..| ..+..++....+.+++.|.. +
T Consensus 14 ~~S~E~~PPk~~~~~~~l~~~~~~L~~~~pd~vsVT~~~~g~~r~~t~~~a~~i~~~g~~~i~H---------------l 78 (310)
T 3apt_A 14 LFSFEFFPPKDPEGEEALFRTLEELKAFRPAFVSITYGAMGSTRERSVAWAQRIQSLGLNPLAH---------------L 78 (310)
T ss_dssp EEEEEECCCSSHHHHHHHHHHHHHHGGGCCSEEEECCCSTTCSHHHHHHHHHHHHHTTCCBCEE---------------E
T ss_pred EEEEEEeCCCCcchHHHHHHHHHHHhcCCCCEEEEecCCCCCcchhHHHHHHHHHHhCCCeEEE---------------e
Confidence 455555544332 1222 3333344333545444 33333 34555555555777765542 1
Q ss_pred EccCChHHHHHHHHHHHHHcCCcEEEEEEecCccc----------cchHHHHHHHHHhc-C--cEEEEEEecCCCCCCCh
Q 002211 161 QTAPNDLYLMSAIAEMVSYFGWGEVIAIFNDDDQG----------RNGVTALGDKLAEI-R--CKISYKSALPPDQSVTE 227 (953)
Q Consensus 161 r~~p~d~~~~~ai~~~l~~~~w~~vaii~~d~~~g----------~~~~~~l~~~l~~~-g--~~v~~~~~~~~~~~~~~ 227 (953)
...-.+....+....-+...|.+.|.++..|-.-+ -.....+.+.+++. | .+|.. ..+|.+. ...
T Consensus 79 tc~~~~~~~l~~~L~~~~~~GI~niLaLrGD~p~~~g~~~~~~~~f~~a~~Lv~~ir~~~g~~f~igv-A~yPE~H-p~~ 156 (310)
T 3apt_A 79 TVAGQSRKEVAEVLHRFVESGVENLLALRGDPPRGERVFRPHPEGFRYAAELVALIRERYGDRVSVGG-AAYPEGH-PES 156 (310)
T ss_dssp ECTTSCHHHHHHHHHHHHHTTCCEEEEECCCCSTTCCSCCCCTTSCSSHHHHHHHHHHHHGGGSEEEE-EECTTCC-TTS
T ss_pred ecCCCCHHHHHHHHHHHHHCCCCEEEEEcCCCCCCCCCCCCCCCCCCCHHHHHHHHHHhCCCCeEEEE-EeCCCcC-CCC
Confidence 11112344455555556789999999998663322 11344555555554 4 46543 4566431 112
Q ss_pred ----HHHHHHHHHHhcCCceEEEEE--cchhhHHHHHHHHHHcCCCCC
Q 002211 228 ----TDVRNELVKVRMMEARVIVVH--GYSRTGLMVFDVAQRLGMMDS 269 (953)
Q Consensus 228 ----~d~~~~l~~i~~~~~~vii~~--~~~~~~~~~~~~a~~~g~~~~ 269 (953)
.|+....+|+. .++|.+|.- .+.+....+++.+++.|...+
T Consensus 157 ~~~~~d~~~Lk~Kv~-aGAdf~iTQ~ffD~~~~~~f~~~~r~~Gi~vP 203 (310)
T 3apt_A 157 ESLEADLRHFKAKVE-AGLDFAITQLFFNNAHYFGFLERARRAGIGIP 203 (310)
T ss_dssp SCHHHHHHHHHHHHH-HHCSEEEECCCSCHHHHHHHHHHHHHTTCCSC
T ss_pred CCHHHHHHHHHHHHH-cCCCEEEecccCCHHHHHHHHHHHHHcCCCCe
Confidence 34444444544 679988874 456778889999999997644
No 372
>2pbq_A Molybdenum cofactor biosynthesis MOG; molybdopterin, MPT, structural genomics, NPPSFA, national PR protein structural and functional analyses; 1.70A {Aquifex aeolicus} PDB: 2qq1_A 3mci_A 3mcj_A 3k6a_A* 2f7w_A 2f7y_A 2fuw_A
Probab=33.65 E-value=1e+02 Score=28.84 Aligned_cols=63 Identities=14% Similarity=0.155 Sum_probs=43.7
Q ss_pred cEEEEEEecCcc--c---cchHHHHHHHHH---hcCcEEEEEEecCCCCCCChHHHHHHHHHHhcC-CceEEEEEcc
Q 002211 183 GEVIAIFNDDDQ--G---RNGVTALGDKLA---EIRCKISYKSALPPDQSVTETDVRNELVKVRMM-EARVIVVHGY 250 (953)
Q Consensus 183 ~~vaii~~d~~~--g---~~~~~~l~~~l~---~~g~~v~~~~~~~~~~~~~~~d~~~~l~~i~~~-~~~vii~~~~ 250 (953)
-+|+||...|+- | ......+.+.++ +.|+++ ....++.+ .+.+...+.+..+. ++|+||..+.
T Consensus 6 ~rv~IistGdE~~~G~i~Dsn~~~l~~~l~~l~~~G~~v-~~~iv~Dd----~~~I~~~l~~~~~~~~~DlVittGG 77 (178)
T 2pbq_A 6 AVIGVVTISDRASKGIYEDISGKAIIDYLKDVIITPFEV-EYRVIPDE----RDLIEKTLIELADEKGCSLILTTGG 77 (178)
T ss_dssp CEEEEEEECHHHHHTSSCCHHHHHHHHHHHHHBCSCCEE-EEEEECSC----HHHHHHHHHHHHHTSCCSEEEEESC
T ss_pred CEEEEEEeCCcCCCCCeecchHHHHHHHHHHHHhCCCEE-EEEEcCCC----HHHHHHHHHHHHhcCCCCEEEECCC
Confidence 367888765431 1 123456777666 889998 65666655 78888888888764 7999999754
No 373
>4a8t_A Putrescine carbamoyltransferase; trabnsferase PALO, delta-N-(phosphonoacetyl)-L- ornithine, agmatine deiminase route, agmatine catabolism; HET: PAO PGE; 1.59A {Enterococcus faecalis}
Probab=33.62 E-value=4.3e+02 Score=27.51 Aligned_cols=132 Identities=17% Similarity=0.280 Sum_probs=79.7
Q ss_pred EEEeEEEecCCCchhHHHHHHHHHHHHHhcCCCCCCCcEEEEEEecCCCChHHHHHHHHHHHhc--CcEEEEccCChhhH
Q 002211 50 LNVGAIFSFGTVNGQVSRIAMKAAQDDINSDPRVLGGRKLSITMHDAKFNGFLSIMGALQFMET--DTLAIVGPQSAVMA 127 (953)
Q Consensus 50 i~IG~l~~~~~~~g~~~~~a~~lAve~iN~~g~il~g~~l~l~~~D~~~~~~~a~~~a~~li~~--~v~aiiGp~~S~~a 127 (953)
-.|+.+|--.+. ..+.+++.|+.++ +|..+.+...+++-.-.+.+.-+.+-++. .++++=++. .
T Consensus 64 k~la~lF~e~ST---RTR~SFE~A~~~L-------Gg~~i~l~~~~ssl~kgEsl~DTarvLs~~~D~IviR~~~----~ 129 (339)
T 4a8t_A 64 KSLGMIFQQSST---RTRVSFETAMEQL-------GGHGEYLAPGQIQLGGHETIEDTSRVLSRLVDILMARVER----H 129 (339)
T ss_dssp CEEEEEESSCCS---HHHHHHHHHHHHT-------TCEEEEECCC-CCSSSSSCHHHHHHHHHHHCSEEEEECSS----H
T ss_pred ceEEEEecCCCc---hHHHHHHHHHHHc-------CCeEEEeCcccccCCCCcCHHHHHHHHHHhCCEEEEecCc----H
Confidence 467888877654 6789999999986 45556554444433222333333344444 455555653 2
Q ss_pred HHHHHhhhhCCCcEEEeecCCCCCCCCCCCcEEEccCChHHHHHHHHHH---HHHc--C--C--cEEEEEEecCccccch
Q 002211 128 HVLSHLANELQVPLLSFTALDPTLSPLQYPFFVQTAPNDLYLMSAIAEM---VSYF--G--W--GEVIAIFNDDDQGRNG 198 (953)
Q Consensus 128 ~av~~v~~~~~vP~Is~~at~~~ls~~~~p~~fr~~p~d~~~~~ai~~~---l~~~--~--w--~~vaii~~d~~~g~~~ 198 (953)
.++..+++..+||+|.-+ + +...| .++++++ .+++ | . .+|+++. |. ...
T Consensus 130 ~~~~~lA~~~~vPVINag--~----~~~HP------------tQaLaDl~Ti~e~~~~G~~l~glkva~vG--D~--~rv 187 (339)
T 4a8t_A 130 HSIVDLANCATIPVINGM--S----DYNHP------------TQELGDLCTMVEHLPEGKKLEDCKVVFVG--DA--TQV 187 (339)
T ss_dssp HHHHHHHHHCSSCEEECC--C----SSCCH------------HHHHHHHHHHHHTCCTTCCGGGCEEEEES--SC--CHH
T ss_pred HHHHHHHHhCCCCEEECC--C----CCcCc------------HHHHHHHHHHHHHhhcCCCCCCCEEEEEC--CC--chh
Confidence 344566777899999743 1 22223 3566666 3556 5 2 5677664 32 567
Q ss_pred HHHHHHHHHhcCcEEEEEE
Q 002211 199 VTALGDKLAEIRCKISYKS 217 (953)
Q Consensus 199 ~~~l~~~l~~~g~~v~~~~ 217 (953)
...+...+...|.+|....
T Consensus 188 a~Sl~~~~~~~G~~v~~~~ 206 (339)
T 4a8t_A 188 CFSLGLITTKMGMNFVHFG 206 (339)
T ss_dssp HHHHHHHHHHTTCEEEEEC
T ss_pred HHHHHHHHHHcCCEEEEEC
Confidence 8888888999998876643
No 374
>3qk7_A Transcriptional regulators; structural genomics, NEW YORK structural genomix research CO NYSGXRC, PSI-2, protein structur initiative; 2.70A {Yersinia pestis}
Probab=33.44 E-value=75 Score=32.29 Aligned_cols=78 Identities=8% Similarity=0.082 Sum_probs=54.2
Q ss_pred CcEEEEEEe------cCccccchHHHHHHHHHhcCcEEEEEEecCCCCCCChHHHHHHHHHHhcCCceEEEEEcchhhHH
Q 002211 182 WGEVIAIFN------DDDQGRNGVTALGDKLAEIRCKISYKSALPPDQSVTETDVRNELVKVRMMEARVIVVHGYSRTGL 255 (953)
Q Consensus 182 w~~vaii~~------d~~~g~~~~~~l~~~l~~~g~~v~~~~~~~~~~~~~~~d~~~~l~~i~~~~~~vii~~~~~~~~~ 255 (953)
-+.|+++.. ++.|.......+.+++++.|..+.....-. . ......++.+.+.+.|.||+.......
T Consensus 6 s~~Igvi~~~~~~~~~~~~~~~~~~gi~~~a~~~g~~~~~~~~~~-~-----~~~~~~~~~l~~~~vdGiIi~~~~~~~- 78 (294)
T 3qk7_A 6 TDAIALAYPSRPRVLNNSTFLEMISWIGIELGKRGLDLLLIPDEP-G-----EKYQSLIHLVETRRVDALIVAHTQPED- 78 (294)
T ss_dssp CCEEEEEEESCSGGGSCHHHHHHHHHHHHHHHHTTCEEEEEEECT-T-----CCCHHHHHHHHHTCCSEEEECSCCSSC-
T ss_pred cceEEEEecCCCccccChhHHHHHHHHHHHHHHCCCEEEEEeCCC-h-----hhHHHHHHHHHcCCCCEEEEeCCCCCh-
Confidence 357888886 356777889999999999999877654322 1 223445667777889999987654322
Q ss_pred HHHHHHHHcCC
Q 002211 256 MVFDVAQRLGM 266 (953)
Q Consensus 256 ~~~~~a~~~g~ 266 (953)
..++.+.+.|+
T Consensus 79 ~~~~~l~~~~i 89 (294)
T 3qk7_A 79 FRLQYLQKQNF 89 (294)
T ss_dssp HHHHHHHHTTC
T ss_pred HHHHHHHhCCC
Confidence 55677777665
No 375
>2x7x_A Sensor protein; transferase, sensor histidine kinase; HET: FRU; 2.64A {Bacteroides thetaiotaomicron}
Probab=33.25 E-value=1.3e+02 Score=31.01 Aligned_cols=80 Identities=6% Similarity=-0.025 Sum_probs=54.1
Q ss_pred CcEEEEEEec-CccccchHHHHHHHHHhc-CcEEEEEEecCCCCCCChHHHHHHHHHHhcCCceEEEEEcchhh-HHHHH
Q 002211 182 WGEVIAIFND-DDQGRNGVTALGDKLAEI-RCKISYKSALPPDQSVTETDVRNELVKVRMMEARVIVVHGYSRT-GLMVF 258 (953)
Q Consensus 182 w~~vaii~~d-~~~g~~~~~~l~~~l~~~-g~~v~~~~~~~~~~~~~~~d~~~~l~~i~~~~~~vii~~~~~~~-~~~~~ 258 (953)
-..|+++..+ ++|.......+.+++++. |..+..... . .+.......++.+...++|.||+...... ....+
T Consensus 6 ~~~Igvi~~~~~~~~~~~~~gi~~~a~~~~g~~l~i~~~-~----~~~~~~~~~i~~l~~~~vdgiIi~~~~~~~~~~~~ 80 (325)
T 2x7x_A 6 HFRIGVAQCSDDSWRHKMNDEILREAMFYNGVSVEIRSA-G----DDNSKQAEDVHYFMDEGVDLLIISANEAAPMTPIV 80 (325)
T ss_dssp CCEEEEEESCCSHHHHHHHHHHHHHHTTSSSCEEEEEEC-T----TCHHHHHHHHHHHHHTTCSEEEECCSSHHHHHHHH
T ss_pred CeEEEEEecCCCHHHHHHHHHHHHHHHHcCCcEEEEeCC-C----CCHHHHHHHHHHHHHcCCCEEEEeCCCHHHHHHHH
Confidence 3578888754 445666778888999888 988765421 1 12444556678888889999998765433 34567
Q ss_pred HHHHHcCC
Q 002211 259 DVAQRLGM 266 (953)
Q Consensus 259 ~~a~~~g~ 266 (953)
+++.+.|+
T Consensus 81 ~~~~~~~i 88 (325)
T 2x7x_A 81 EEAYQKGI 88 (325)
T ss_dssp HHHHHTTC
T ss_pred HHHHHCCC
Confidence 77777664
No 376
>3brs_A Periplasmic binding protein/LACI transcriptional; structural genomics, protein structure initiative; 2.00A {Clostridium phytofermentans}
Probab=33.17 E-value=3.7e+02 Score=26.58 Aligned_cols=119 Identities=13% Similarity=0.094 Sum_probs=67.4
Q ss_pred EEEeEEEecC-CCchhHHHHHHHHHHHHHhcCCCCCCCcEEEEEEecCCCChHHHHHHHHHHHhc--CcEEEEccCChhh
Q 002211 50 LNVGAIFSFG-TVNGQVSRIAMKAAQDDINSDPRVLGGRKLSITMHDAKFNGFLSIMGALQFMET--DTLAIVGPQSAVM 126 (953)
Q Consensus 50 i~IG~l~~~~-~~~g~~~~~a~~lAve~iN~~g~il~g~~l~l~~~D~~~~~~~a~~~a~~li~~--~v~aiiGp~~S~~ 126 (953)
=+||++.... ......-..|++-|+++.+ ..+.- ......+...+.+.+.+++.. .+.||+... ...
T Consensus 132 ~~i~~i~~~~~~~~~~~R~~gf~~~l~~~g--------~~~~~-~~~~~~~~~~~~~~~~~~l~~~~~~~ai~~~~-d~~ 201 (289)
T 3brs_A 132 GKIGVISFVKNSKTAMDREEGLKIGLSDDS--------NKIEA-IYYCDSNYDKAYDGTVELLTKYPDISVMVGLN-QYS 201 (289)
T ss_dssp CEEEEEESCTTSHHHHHHHHHHHHHHGGGG--------GGEEE-EEECTTCHHHHHHHHHHHHHHCTTEEEEEESS-HHH
T ss_pred ceEEEEECCCCCccHHHHHHHHHHHHHhCC--------CcEEe-eecCCCCHHHHHHHHHHHHHhCCCceEEEECC-Ccc
Confidence 3677776542 3334455677777776631 11211 223345777788888888875 589999853 445
Q ss_pred HHHHHHhhhhCC----CcEEEeecCCCCCCCCCCCcE-EEccCChHHHHHHHHHHHH
Q 002211 127 AHVLSHLANELQ----VPLLSFTALDPTLSPLQYPFF-VQTAPNDLYLMSAIAEMVS 178 (953)
Q Consensus 127 a~av~~v~~~~~----vP~Is~~at~~~ls~~~~p~~-fr~~p~d~~~~~ai~~~l~ 178 (953)
+..+...+.+.+ +.++++........-...|.+ -.+..+...++...++.+.
T Consensus 202 a~g~~~al~~~G~~~di~vvg~d~~~~~~~~~~~~~l~ttv~~~~~~~g~~a~~~l~ 258 (289)
T 3brs_A 202 ATGAARAIKDMSLEAKVKLVCIDSSMEQIQYLEEGIFEAMVVQKPFNIGYLGVEKAL 258 (289)
T ss_dssp HHHHHHHHHHTTCTTTSEEEEEESCSCC-----CCSCCEEEECCHHHHHHHHHHHHH
T ss_pred hHHHHHHHHhcCCCCCEEEEEECCCHHHHHHHHCCceEEEEecChHHHHHHHHHHHH
Confidence 556666666654 678887655431111111334 4445566667777666643
No 377
>3e61_A Putative transcriptional repressor of ribose OPER; structural genomics, DNA-binding, transcripti regulation, PSI-2; 2.00A {Staphylococcus saprophyticus subsp}
Probab=33.00 E-value=81 Score=31.53 Aligned_cols=77 Identities=4% Similarity=-0.036 Sum_probs=54.0
Q ss_pred CcEEEEEEec--CccccchHHHHHHHHHhcCcEEEEEEecCCCCCCChHHHHHHHHHHhcCCceEEEEEcchhhHHHHHH
Q 002211 182 WGEVIAIFND--DDQGRNGVTALGDKLAEIRCKISYKSALPPDQSVTETDVRNELVKVRMMEARVIVVHGYSRTGLMVFD 259 (953)
Q Consensus 182 w~~vaii~~d--~~~g~~~~~~l~~~l~~~g~~v~~~~~~~~~~~~~~~d~~~~l~~i~~~~~~vii~~~~~~~~~~~~~ 259 (953)
-+.|+++..+ +.|.....+.+.+++++.|..+..... . .+.......++.+.+.++|.||+..... ..++
T Consensus 8 ~~~Ig~i~~~~~~~~~~~~~~gi~~~~~~~g~~~~~~~~-~----~~~~~~~~~~~~l~~~~~dgiIi~~~~~---~~~~ 79 (277)
T 3e61_A 8 SKLIGLLLPDMSNPFFTLIARGVEDVALAHGYQVLIGNS-D----NDIKKAQGYLATFVSHNCTGMISTAFNE---NIIE 79 (277)
T ss_dssp --CEEEEESCTTSHHHHHHHHHHHHHHHHTTCCEEEEEC-T----TCHHHHHHHHHHHHHTTCSEEEECGGGH---HHHH
T ss_pred CCEEEEEECCCCCHHHHHHHHHHHHHHHHCCCEEEEEeC-C----CCHHHHHHHHHHHHhCCCCEEEEecCCh---HHHH
Confidence 3568888864 677888899999999999998765321 1 1245566778888889999999987332 3466
Q ss_pred -HHHHcCC
Q 002211 260 -VAQRLGM 266 (953)
Q Consensus 260 -~a~~~g~ 266 (953)
.+.+.|+
T Consensus 80 ~~l~~~~i 87 (277)
T 3e61_A 80 NTLTDHHI 87 (277)
T ss_dssp HHHHHC-C
T ss_pred HHHHcCCC
Confidence 6777665
No 378
>2pln_A HP1043, response regulator; signaling protein; 1.80A {Helicobacter pylori} PDB: 2hqo_A
Probab=33.00 E-value=1.4e+02 Score=25.56 Aligned_cols=55 Identities=4% Similarity=-0.069 Sum_probs=35.2
Q ss_pred chHHHHHHHHHhcCcEEEEEEecCCCCCCChHHHHHHHHHHhcCCceEEEEEcchhhHHHHHHHHHHc
Q 002211 197 NGVTALGDKLAEIRCKISYKSALPPDQSVTETDVRNELVKVRMMEARVIVVHGYSRTGLMVFDVAQRL 264 (953)
Q Consensus 197 ~~~~~l~~~l~~~g~~v~~~~~~~~~~~~~~~d~~~~l~~i~~~~~~vii~~~~~~~~~~~~~~a~~~ 264 (953)
.....+.+.+++.|..|.. .. +....+..+....+|+|+ ....++..+++++++.
T Consensus 29 ~~~~~l~~~L~~~g~~v~~---~~--------~~~~al~~l~~~~~dlvi--~~~~~g~~~~~~l~~~ 83 (137)
T 2pln_A 29 VLGGEIEKGLNVKGFMADV---TE--------SLEDGEYLMDIRNYDLVM--VSDKNALSFVSRIKEK 83 (137)
T ss_dssp HHHHHHHHHHHHTTCEEEE---ES--------CHHHHHHHHHHSCCSEEE--ECSTTHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCcEEEE---eC--------CHHHHHHHHHcCCCCEEE--EcCccHHHHHHHHHhc
Confidence 4556677777777876542 11 223445555667789888 4455677788888775
No 379
>3gt7_A Sensor protein; structural genomics, signal receiver domain, kinase, PSI-2, protein structure initiative; 2.30A {Syntrophus aciditrophicus SB}
Probab=32.97 E-value=2.5e+02 Score=24.65 Aligned_cols=58 Identities=10% Similarity=0.067 Sum_probs=41.6
Q ss_pred chHHHHHHHHHhcCcEEEEEEecCCCCCCChHHHHHHHHHHhcCCceEEEEEcc--hhhHHHHHHHHHHcC
Q 002211 197 NGVTALGDKLAEIRCKISYKSALPPDQSVTETDVRNELVKVRMMEARVIVVHGY--SRTGLMVFDVAQRLG 265 (953)
Q Consensus 197 ~~~~~l~~~l~~~g~~v~~~~~~~~~~~~~~~d~~~~l~~i~~~~~~vii~~~~--~~~~~~~~~~a~~~g 265 (953)
.....+.+.+++.|..|... .+....+..++...+|+|++... ..++..+++++++..
T Consensus 18 ~~~~~l~~~L~~~g~~v~~~-----------~~~~~al~~l~~~~~dlii~D~~l~~~~g~~~~~~lr~~~ 77 (154)
T 3gt7_A 18 TQAEHLKHILEETGYQTEHV-----------RNGREAVRFLSLTRPDLIISDVLMPEMDGYALCRWLKGQP 77 (154)
T ss_dssp HHHHHHHHHHHTTTCEEEEE-----------SSHHHHHHHHTTCCCSEEEEESCCSSSCHHHHHHHHHHST
T ss_pred HHHHHHHHHHHHCCCEEEEe-----------CCHHHHHHHHHhCCCCEEEEeCCCCCCCHHHHHHHHHhCC
Confidence 45677888888888776421 13345677778888999999764 456788888888864
No 380
>2vk2_A YTFQ, ABC transporter periplasmic-binding protein YTFQ; transport protein, galactofuranose; HET: GZL; 1.20A {Escherichia coli}
Probab=32.84 E-value=78 Score=32.34 Aligned_cols=79 Identities=6% Similarity=-0.078 Sum_probs=54.1
Q ss_pred cEEEEEEe--cCccccchHHHHHHHHHhcCcEEEEEEecCCCCCCChHHHHHHHHHHhcCCceEEEEEcchhh-HHHHHH
Q 002211 183 GEVIAIFN--DDDQGRNGVTALGDKLAEIRCKISYKSALPPDQSVTETDVRNELVKVRMMEARVIVVHGYSRT-GLMVFD 259 (953)
Q Consensus 183 ~~vaii~~--d~~~g~~~~~~l~~~l~~~g~~v~~~~~~~~~~~~~~~d~~~~l~~i~~~~~~vii~~~~~~~-~~~~~~ 259 (953)
.+|+++.. ++.|.......+.+++++.|..+..... . .+...-...++.+.+.++|.||+...... ....++
T Consensus 3 ~~Ig~i~~~~~~~~~~~~~~gi~~~a~~~g~~l~~~~~---~--~~~~~~~~~i~~l~~~~vdgiIi~~~~~~~~~~~~~ 77 (306)
T 2vk2_A 3 LTVGFSQVGSESGWRAAETNVAKSEAEKRGITLKIADG---Q--QKQENQIKAVRSFVAQGVDAIFIAPVVATGWEPVLK 77 (306)
T ss_dssp CEEEEEECCCCSHHHHHHHHHHHHHHHHHTCEEEEEEC---T--TCHHHHHHHHHHHHHHTCSEEEECCSSSSSCHHHHH
T ss_pred eEEEEEeCCCCCHHHHHHHHHHHHHHHHcCCEEEEeCC---C--CCHHHHHHHHHHHHHcCCCEEEEeCCChhhHHHHHH
Confidence 46888875 3567777888999999999998765421 1 12444556677777788999998765432 235667
Q ss_pred HHHHcCC
Q 002211 260 VAQRLGM 266 (953)
Q Consensus 260 ~a~~~g~ 266 (953)
.+.+.|+
T Consensus 78 ~~~~~~i 84 (306)
T 2vk2_A 78 EAKDAEI 84 (306)
T ss_dssp HHHHTTC
T ss_pred HHHHCCC
Confidence 7777664
No 381
>3cg4_A Response regulator receiver domain protein (CHEY-; structural genomics, unknown function; HET: MSE; 1.61A {Methanospirillum hungatei jf-1}
Probab=32.64 E-value=2.4e+02 Score=24.19 Aligned_cols=56 Identities=9% Similarity=-0.043 Sum_probs=39.4
Q ss_pred chHHHHHHHHHhcCcEEEEEEecCCCCCCChHHHHHHHHHHhcCCceEEEEEcch--hhHHHHHHHHHH
Q 002211 197 NGVTALGDKLAEIRCKISYKSALPPDQSVTETDVRNELVKVRMMEARVIVVHGYS--RTGLMVFDVAQR 263 (953)
Q Consensus 197 ~~~~~l~~~l~~~g~~v~~~~~~~~~~~~~~~d~~~~l~~i~~~~~~vii~~~~~--~~~~~~~~~a~~ 263 (953)
...+.+.+.+++.|..|.. . .+....+..++...+|+|++.... .++..+++++++
T Consensus 18 ~~~~~l~~~L~~~g~~v~~---~--------~~~~~a~~~l~~~~~dlii~d~~l~~~~g~~~~~~l~~ 75 (142)
T 3cg4_A 18 HVRIAVKTILSDAGFHIIS---A--------DSGGQCIDLLKKGFSGVVLLDIMMPGMDGWDTIRAILD 75 (142)
T ss_dssp HHHHHHHHHHHHTTCEEEE---E--------SSHHHHHHHHHTCCCEEEEEESCCSSSCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCeEEEE---e--------CCHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHh
Confidence 4567778888888877542 1 123456677777889999997653 467788888887
No 382
>1di6_A MOGA, molybdenum cofactor biosynthetic enzyme; MOCO, MOCO biosynthesis, gephyrin function; 1.45A {Escherichia coli} SCOP: c.57.1.1 PDB: 1di7_A
Probab=31.96 E-value=1e+02 Score=29.46 Aligned_cols=64 Identities=13% Similarity=0.153 Sum_probs=43.8
Q ss_pred cEEEEEEecCccc-----cchHHHHHHHHHhcCcE--EEEEEecCCCCCCChHHHHHHHHHHhcC-CceEEEEEcc
Q 002211 183 GEVIAIFNDDDQG-----RNGVTALGDKLAEIRCK--ISYKSALPPDQSVTETDVRNELVKVRMM-EARVIVVHGY 250 (953)
Q Consensus 183 ~~vaii~~d~~~g-----~~~~~~l~~~l~~~g~~--v~~~~~~~~~~~~~~~d~~~~l~~i~~~-~~~vii~~~~ 250 (953)
-+|++|...|+-. ......+.+.+++.|.+ +.....++.+ .+.+...|.++.+. ++|+||..+.
T Consensus 4 ~rv~IIttGdEl~~G~i~D~n~~~L~~~L~~~G~~~~v~~~~iV~Dd----~~~I~~al~~a~~~~~~DlVitTGG 75 (195)
T 1di6_A 4 LRIGLVSISDRASSGVYQDKGIPALEEWLTSALTTPFELETRLIPDE----QAIIEQTLCELVDEMSCHLVLTTGG 75 (195)
T ss_dssp EEEEEEEEECC-------CCHHHHHHHHHHHHBCSCEEEEEEEEESC----HHHHHHHHHHHHHTSCCSEEEEESC
T ss_pred CEEEEEEECCCCCCCeEEchHHHHHHHHHHHcCCCCceEEEEEeCCC----HHHHHHHHHHHHhcCCCCEEEECCC
Confidence 4678877555432 22346788888888876 5555556655 77888888887764 7999998754
No 383
>3to5_A CHEY homolog; alpha(5)beta(5), chemotaxis, FLIM, phosphorylation, motor AC signaling protein; 1.65A {Vibrio cholerae}
Probab=31.73 E-value=2.2e+02 Score=24.93 Aligned_cols=59 Identities=8% Similarity=0.038 Sum_probs=39.8
Q ss_pred chHHHHHHHHHhcCcEEEEEEecCCCCCCChHHHHHHHHHHhcCCceEEEEEcc--hhhHHHHHHHHHHcC
Q 002211 197 NGVTALGDKLAEIRCKISYKSALPPDQSVTETDVRNELVKVRMMEARVIVVHGY--SRTGLMVFDVAQRLG 265 (953)
Q Consensus 197 ~~~~~l~~~l~~~g~~v~~~~~~~~~~~~~~~d~~~~l~~i~~~~~~vii~~~~--~~~~~~~~~~a~~~g 265 (953)
.....+...+++.|..++... .+-...+..+++..+|+|++... .-++..++++.++..
T Consensus 23 ~~r~~l~~~L~~~G~~~v~~a----------~~g~~al~~~~~~~~DlillD~~MP~mdG~el~~~ir~~~ 83 (134)
T 3to5_A 23 TMRRIVKNLLRDLGFNNTQEA----------DDGLTALPMLKKGDFDFVVTDWNMPGMQGIDLLKNIRADE 83 (134)
T ss_dssp HHHHHHHHHHHHTTCCCEEEE----------SSHHHHHHHHHHHCCSEEEEESCCSSSCHHHHHHHHHHST
T ss_pred HHHHHHHHHHHHcCCcEEEEE----------CCHHHHHHHHHhCCCCEEEEcCCCCCCCHHHHHHHHHhCC
Confidence 456677788888887643321 12234566677778999999654 457888888888754
No 384
>3kto_A Response regulator receiver protein; PSI-II,structural genomics, protein structure initiative; 1.98A {Pseudoalteromonas atlantica T6C} SCOP: c.23.1.0
Probab=31.66 E-value=2.4e+02 Score=24.03 Aligned_cols=58 Identities=12% Similarity=0.180 Sum_probs=41.5
Q ss_pred chHHHHHHHHHhcCcEEEEEEecCCCCCCChHHHHHHHHHHhcCCceEEEEEcch----hhHHHHHHHHHHcC
Q 002211 197 NGVTALGDKLAEIRCKISYKSALPPDQSVTETDVRNELVKVRMMEARVIVVHGYS----RTGLMVFDVAQRLG 265 (953)
Q Consensus 197 ~~~~~l~~~l~~~g~~v~~~~~~~~~~~~~~~d~~~~l~~i~~~~~~vii~~~~~----~~~~~~~~~a~~~g 265 (953)
.....+.+.+++.|..|... .+....+..+++..+|+|++.... .++..+++++++.+
T Consensus 17 ~~~~~l~~~L~~~g~~v~~~-----------~~~~~a~~~l~~~~~dlvi~D~~l~~~~~~g~~~~~~l~~~~ 78 (136)
T 3kto_A 17 DARAALSKLLSPLDVTIQCF-----------ASAESFMRQQISDDAIGMIIEAHLEDKKDSGIELLETLVKRG 78 (136)
T ss_dssp HHHHHHHHHHTTSSSEEEEE-----------SSHHHHTTSCCCTTEEEEEEETTGGGBTTHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHCCcEEEEe-----------CCHHHHHHHHhccCCCEEEEeCcCCCCCccHHHHHHHHHhCC
Confidence 45677888888888876531 123455667777889999998653 45788899998865
No 385
>4a8p_A Putrescine carbamoyltransferase; ornithine agmatine deiminase route; HET: PAO; 2.00A {Enterococcus faecalis} PDB: 4a8h_A* 3txx_A
Probab=31.62 E-value=4.7e+02 Score=27.38 Aligned_cols=132 Identities=17% Similarity=0.280 Sum_probs=82.1
Q ss_pred EEEeEEEecCCCchhHHHHHHHHHHHHHhcCCCCCCCcEEEEEEecCCCChHHHHHHHHHHHhc--CcEEEEccCChhhH
Q 002211 50 LNVGAIFSFGTVNGQVSRIAMKAAQDDINSDPRVLGGRKLSITMHDAKFNGFLSIMGALQFMET--DTLAIVGPQSAVMA 127 (953)
Q Consensus 50 i~IG~l~~~~~~~g~~~~~a~~lAve~iN~~g~il~g~~l~l~~~D~~~~~~~a~~~a~~li~~--~v~aiiGp~~S~~a 127 (953)
-.|+.+|--.+. ..+.+++.|+.++ +|..+.+...+++-.-.+.+.-+.+-++. .++++=++. .
T Consensus 42 K~la~lF~epST---RTR~SFE~A~~~L-------Gg~vi~l~~~~ssl~kgEsl~DTarvLs~y~D~IviR~~~----~ 107 (355)
T 4a8p_A 42 KSLGMIFQQSST---RTRVSFETAMEQL-------GGHGEYLAPGQIQLGGHETIEDTSRVLSRLVDILMARVER----H 107 (355)
T ss_dssp CEEEEEESSCCS---HHHHHHHHHHHHT-------TCEEEEECBTTBCBTTTBCHHHHHHHHTTTCSEEEEECSS----H
T ss_pred CEEEEEecCCCh---hhHhhHHHHHHHc-------CCeEEEeCcccccCCCCcCHHHHHHHHHHhCCEEEEecCc----H
Confidence 467888877664 5789999999986 45566554444443333445555555665 444444543 2
Q ss_pred HHHHHhhhhCCCcEEEeecCCCCCCCCCCCcEEEccCChHHHHHHHHHH---HHHc--C--C--cEEEEEEecCccccch
Q 002211 128 HVLSHLANELQVPLLSFTALDPTLSPLQYPFFVQTAPNDLYLMSAIAEM---VSYF--G--W--GEVIAIFNDDDQGRNG 198 (953)
Q Consensus 128 ~av~~v~~~~~vP~Is~~at~~~ls~~~~p~~fr~~p~d~~~~~ai~~~---l~~~--~--w--~~vaii~~d~~~g~~~ 198 (953)
.++..+++..+||+|.-+ + +...| .++++++ .+++ | + .+|+++. |. ...
T Consensus 108 ~~~~~lA~~~~vPVINag--~----~~~HP------------tQaLaDl~TI~E~~~~G~~l~glkva~vG--D~--~rv 165 (355)
T 4a8p_A 108 HSIVDLANCATIPVINGM--S----DYNHP------------TQELGDLCTMVEHLPEGKKLEDCKVVFVG--DA--TQV 165 (355)
T ss_dssp HHHHHHHHHCSSCEEECC--C----SSCCH------------HHHHHHHHHHHHTCCTTCCGGGCEEEEES--CC--CHH
T ss_pred HHHHHHHHhCCCCEEeCC--C----CCCCc------------HHHHHHHHHHHHHhhcCCCCCCCEEEEEC--CC--chh
Confidence 344566777899999743 1 22223 3566666 3556 5 3 5677664 32 567
Q ss_pred HHHHHHHHHhcCcEEEEEE
Q 002211 199 VTALGDKLAEIRCKISYKS 217 (953)
Q Consensus 199 ~~~l~~~l~~~g~~v~~~~ 217 (953)
...+...+...|.+|....
T Consensus 166 a~Sl~~~~~~~G~~v~~~~ 184 (355)
T 4a8p_A 166 CFSLGLITTKMGMNFVHFG 184 (355)
T ss_dssp HHHHHHHHHHTTCEEEEEC
T ss_pred HHHHHHHHHHcCCEEEEEC
Confidence 8888888999998876643
No 386
>3heb_A Response regulator receiver domain protein (CHEY); NYSGXRC, PSI-II, respose regulator, structure initiative, structural genomics; 2.40A {Rhodospirillum rubrum} SCOP: c.23.1.0
Probab=31.56 E-value=2.6e+02 Score=24.37 Aligned_cols=70 Identities=16% Similarity=0.106 Sum_probs=42.3
Q ss_pred chHHHHHHHHHhcCc--EEEEEEecCCCCCCChHHHHHHHHHHh---------cCCceEEEEEcc--hhhHHHHHHHHHH
Q 002211 197 NGVTALGDKLAEIRC--KISYKSALPPDQSVTETDVRNELVKVR---------MMEARVIVVHGY--SRTGLMVFDVAQR 263 (953)
Q Consensus 197 ~~~~~l~~~l~~~g~--~v~~~~~~~~~~~~~~~d~~~~l~~i~---------~~~~~vii~~~~--~~~~~~~~~~a~~ 263 (953)
.....+.+.+++.|. .|... .+....+..++ ...+|+|++... ..++..++++.++
T Consensus 15 ~~~~~l~~~L~~~g~~~~v~~~-----------~~~~~al~~l~~~~~~~~~~~~~~dliilD~~l~~~~g~~~~~~lr~ 83 (152)
T 3heb_A 15 GHARLIEKNIRRAGVNNEIIAF-----------TDGTSALNYLFGDDKSGRVSAGRAQLVLLDLNLPDMTGIDILKLVKE 83 (152)
T ss_dssp HHHHHHHHHHHHTTCCCCEEEE-----------SSHHHHHHHHHCTTSSSGGGTTCBEEEEECSBCSSSBHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCCcceEEEe-----------CCHHHHHHHHhccccccccccCCCCEEEEeCCCCCCcHHHHHHHHHh
Confidence 456777888888887 44321 12234455553 567999999644 4567888888888
Q ss_pred cCCCCCceEEEEeC
Q 002211 264 LGMMDSGYVWIATT 277 (953)
Q Consensus 264 ~g~~~~~~~wi~~~ 277 (953)
......-.+.+.++
T Consensus 84 ~~~~~~~pii~~t~ 97 (152)
T 3heb_A 84 NPHTRRSPVVILTT 97 (152)
T ss_dssp STTTTTSCEEEEES
T ss_pred cccccCCCEEEEec
Confidence 43222223444444
No 387
>3qja_A IGPS, indole-3-glycerol phosphate synthase; structural genomics, T structural genomics consortium, TBSGC, lyase; 1.29A {Mycobacterium tuberculosis} PDB: 3t40_A* 3t44_A* 3t55_A* 3t78_A* 4fb7_A*
Probab=31.54 E-value=1.2e+02 Score=30.74 Aligned_cols=87 Identities=14% Similarity=0.131 Sum_probs=59.0
Q ss_pred HHHHHHHHHcCCcEEEEEEecCccccchHHHHHHHHHhcCcEEEEEEecCCCCCCChHHHHHHHHHHhcCCceEEEEEc-
Q 002211 171 SAIAEMVSYFGWGEVIAIFNDDDQGRNGVTALGDKLAEIRCKISYKSALPPDQSVTETDVRNELVKVRMMEARVIVVHG- 249 (953)
Q Consensus 171 ~ai~~~l~~~~w~~vaii~~d~~~g~~~~~~l~~~l~~~g~~v~~~~~~~~~~~~~~~d~~~~l~~i~~~~~~vii~~~- 249 (953)
..+++....-|...+.++. |..|..+..+.+...-+..++.|.... +-.+ ++ ++...+..++|.|++..
T Consensus 75 ~~~A~~y~~~GA~~isvlt-d~~~f~Gs~~~l~~ir~~v~lPvl~kd-fiid------~~--qv~~A~~~GAD~VlLi~a 144 (272)
T 3qja_A 75 AKLAQAYQDGGARIVSVVT-EQRRFQGSLDDLDAVRASVSIPVLRKD-FVVQ------PY--QIHEARAHGADMLLLIVA 144 (272)
T ss_dssp HHHHHHHHHTTCSEEEEEC-CGGGHHHHHHHHHHHHHHCSSCEEEES-CCCS------HH--HHHHHHHTTCSEEEEEGG
T ss_pred HHHHHHHHHcCCCEEEEec-ChhhcCCCHHHHHHHHHhCCCCEEECc-cccC------HH--HHHHHHHcCCCEEEEecc
Confidence 4566677778999998886 445555556666655555677776543 2222 22 36667789999999953
Q ss_pred --chhhHHHHHHHHHHcCCC
Q 002211 250 --YSRTGLMVFDVAQRLGMM 267 (953)
Q Consensus 250 --~~~~~~~~~~~a~~~g~~ 267 (953)
...+...+...+++.||.
T Consensus 145 ~l~~~~l~~l~~~a~~lGl~ 164 (272)
T 3qja_A 145 ALEQSVLVSMLDRTESLGMT 164 (272)
T ss_dssp GSCHHHHHHHHHHHHHTTCE
T ss_pred cCCHHHHHHHHHHHHHCCCc
Confidence 346778889999998874
No 388
>1dbq_A Purine repressor; transcription regulation, DNA-binding regulatory protein; 2.20A {Escherichia coli} SCOP: c.93.1.1 PDB: 1jhz_A
Probab=31.18 E-value=1.4e+02 Score=29.95 Aligned_cols=64 Identities=6% Similarity=-0.087 Sum_probs=47.2
Q ss_pred cEEEEEEe--cCccccchHHHHHHHHHhcCcEEEEEEecCCCCCCChHHHHHHHHHHhcCCceEEEEEcch
Q 002211 183 GEVIAIFN--DDDQGRNGVTALGDKLAEIRCKISYKSALPPDQSVTETDVRNELVKVRMMEARVIVVHGYS 251 (953)
Q Consensus 183 ~~vaii~~--d~~~g~~~~~~l~~~l~~~g~~v~~~~~~~~~~~~~~~d~~~~l~~i~~~~~~vii~~~~~ 251 (953)
++|+++.. +++|.......+.+++++.|..+.... .. .+.......++.+.+.++|.||+....
T Consensus 8 ~~Ig~i~~~~~~~~~~~~~~gi~~~~~~~g~~~~~~~---~~--~~~~~~~~~~~~l~~~~vdgii~~~~~ 73 (289)
T 1dbq_A 8 KSIGLLATSSEAAYFAEIIEAVEKNCFQKGYTLILGN---AW--NNLEKQRAYLSMMAQKRVDGLLVMCSE 73 (289)
T ss_dssp CEEEEEESCTTSHHHHHHHHHHHHHHHHHTCEEEEEE---CT--TCHHHHHHHHHHHHHTTCSEEEEECSC
T ss_pred CEEEEEeCCCCChHHHHHHHHHHHHHHHcCCeEEEEc---CC--CChHHHHHHHHHHHhCCCCEEEEEecc
Confidence 57888885 466777888999999999999876532 11 224555667888888899999987654
No 389
>3gv0_A Transcriptional regulator, LACI family; transcription regulator, PSI-II, structural genomics structure initiative; 2.35A {Agrobacterium tumefaciens str}
Probab=31.10 E-value=83 Score=31.81 Aligned_cols=80 Identities=5% Similarity=-0.008 Sum_probs=53.0
Q ss_pred CCcEEEEEEec--C--ccccchHHHHHHHHHhcCcEEEEEEecCCCCCCChHHHHHHHHHHhcCCceEEEEEcchhhHHH
Q 002211 181 GWGEVIAIFND--D--DQGRNGVTALGDKLAEIRCKISYKSALPPDQSVTETDVRNELVKVRMMEARVIVVHGYSRTGLM 256 (953)
Q Consensus 181 ~w~~vaii~~d--~--~~g~~~~~~l~~~l~~~g~~v~~~~~~~~~~~~~~~d~~~~l~~i~~~~~~vii~~~~~~~~~~ 256 (953)
.-+.|+++..+ + +|.......+.+++++.|..+.....-. +.......+..+.+.+.|.||+...... ..
T Consensus 7 ~s~~Igvv~~~~~~~~~~~~~~~~gi~~~a~~~g~~~~~~~~~~-----~~~~~~~~~~~l~~~~vdgiIi~~~~~~-~~ 80 (288)
T 3gv0_A 7 KTNVIALVLSVDEELMGFTSQMVFGITEVLSTTQYHLVVTPHIH-----AKDSMVPIRYILETGSADGVIISKIEPN-DP 80 (288)
T ss_dssp CCCEEEEECBCCCCSSCHHHHHHHHHHHHHTTSSCEEEECCBSS-----GGGTTHHHHHHHHHTCCSEEEEESCCTT-CH
T ss_pred CCCEEEEEecCCccccHHHHHHHHHHHHHHHHcCCEEEEecCCc-----chhHHHHHHHHHHcCCccEEEEecCCCC-cH
Confidence 44678888864 3 6788889999999999999877532111 1222344455566789999998754322 24
Q ss_pred HHHHHHHcCC
Q 002211 257 VFDVAQRLGM 266 (953)
Q Consensus 257 ~~~~a~~~g~ 266 (953)
.++.+.+.|+
T Consensus 81 ~~~~l~~~~i 90 (288)
T 3gv0_A 81 RVRFMTERNM 90 (288)
T ss_dssp HHHHHHHTTC
T ss_pred HHHHHhhCCC
Confidence 5667777664
No 390
>3mz1_A Putative transcriptional regulator; structural genomics, PSI-2, protein structure initiative, MI center for STR uctural genomics, MCSG; 1.88A {Sinorhizobium meliloti}
Probab=31.08 E-value=47 Score=33.59 Aligned_cols=72 Identities=7% Similarity=-0.075 Sum_probs=42.5
Q ss_pred ceEeCCCHHHHHHHHHcCCcEEEEccchhHHHHHhcCcceEEeCC--ccccCccEEEecCCCcchHHHHHHHHhhh
Q 002211 737 RLVALGSPEEYAIALENRTVAAVVDERPYIDLFLSDHCQFSVRGQ--EFTKSGWGFAFPRDSPLAIDMSTAILTLS 810 (953)
Q Consensus 737 ~~~~~~~~~~~~~~l~~g~~~a~~~~~~~~~~~~~~~~~l~~~~~--~~~~~~~~~~~~k~spl~~~~n~~i~~l~ 810 (953)
....+++.+.....+..|.--+++-+.....+. .. ..+..+.. ......++++.+++.+....+...+..+.
T Consensus 215 ~~~~~~~~~~~~~~v~~g~Gi~~lp~~~~~~~~-~~-~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~f~~~l~ 288 (300)
T 3mz1_A 215 YTMAANESTTYLAAARAGLGVIQAPLFMVREDL-RN-GTMVPVLPDWQVEPMPIYLVYPPNRHLSSRLRVFADWVV 288 (300)
T ss_dssp EEEEESSHHHHHHHHHTTCCBEEEEHHHHHHHH-HH-TSEEECCTTCBCCCEEEEEEECTTCCCCHHHHHHHHHHH
T ss_pred ceEEECCHHHHHHHHHhCCCEEeccHHHHHHHH-hC-CCeEEeCCCcCCCCccEEEEEcCcccCcHHHHHHHHHHH
Confidence 445678999999999987766666544333332 22 23444432 23344677888888665555555544443
No 391
>3c3k_A Alanine racemase; structural genomics, protein structure initiative, NEW YORK research center for structural genomics, nysgxrc; 1.99A {Actinobacillus succinogenes}
Probab=30.99 E-value=1.5e+02 Score=29.67 Aligned_cols=78 Identities=6% Similarity=-0.048 Sum_probs=53.1
Q ss_pred CcEEEEEEe--cCccccchHHHHHHHHHhcCcEEEEEEecCCCCCCChHHHHHHHHHHhcCCceEEEEEcchhhHHHHHH
Q 002211 182 WGEVIAIFN--DDDQGRNGVTALGDKLAEIRCKISYKSALPPDQSVTETDVRNELVKVRMMEARVIVVHGYSRTGLMVFD 259 (953)
Q Consensus 182 w~~vaii~~--d~~~g~~~~~~l~~~l~~~g~~v~~~~~~~~~~~~~~~d~~~~l~~i~~~~~~vii~~~~~~~~~~~~~ 259 (953)
-+.|+++.. +++|.......+.+++++.|..+.... .. .+...-...++.+...++|.||+....... ..++
T Consensus 8 ~~~Igvi~~~~~~~~~~~~~~gi~~~~~~~g~~~~~~~---~~--~~~~~~~~~~~~l~~~~vdgiI~~~~~~~~-~~~~ 81 (285)
T 3c3k_A 8 TGMLLVMVSNIANPFCAAVVKGIEKTAEKNGYRILLCN---TE--SDLARSRSCLTLLSGKMVDGVITMDALSEL-PELQ 81 (285)
T ss_dssp CCEEEEEESCTTSHHHHHHHHHHHHHHHHTTCEEEEEE---CT--TCHHHHHHHTHHHHTTCCSEEEECCCGGGH-HHHH
T ss_pred CCEEEEEeCCCCCchHHHHHHHHHHHHHHcCCEEEEEe---CC--CCHHHHHHHHHHHHhCCCCEEEEeCCCCCh-HHHH
Confidence 467888886 467778889999999999999876542 11 124444566788888899999987543222 3455
Q ss_pred HHHHcCC
Q 002211 260 VAQRLGM 266 (953)
Q Consensus 260 ~a~~~g~ 266 (953)
.+. .|.
T Consensus 82 ~l~-~~i 87 (285)
T 3c3k_A 82 NII-GAF 87 (285)
T ss_dssp HHH-TTS
T ss_pred HHh-cCC
Confidence 555 553
No 392
>3pzy_A MOG; ssgcid, seattle structural genomics center for infectious DI biosynthetic protein; 1.80A {Mycobacterium avium subsp} PDB: 3oi9_A 2g4r_A
Probab=30.93 E-value=86 Score=28.97 Aligned_cols=63 Identities=17% Similarity=0.139 Sum_probs=43.7
Q ss_pred cEEEEEEecCcc--c---cchHHHHHHHHHhcCcEEEEEEecCCCCCCChHHHHHHHHHHhcCCceEEEEEcc
Q 002211 183 GEVIAIFNDDDQ--G---RNGVTALGDKLAEIRCKISYKSALPPDQSVTETDVRNELVKVRMMEARVIVVHGY 250 (953)
Q Consensus 183 ~~vaii~~d~~~--g---~~~~~~l~~~l~~~g~~v~~~~~~~~~~~~~~~d~~~~l~~i~~~~~~vii~~~~ 250 (953)
.+|++|...|+- | ......+.+.+++.|.++.....++ + + +.+...+.+..+.++|+||..+.
T Consensus 8 ~rv~ii~tGdEl~~G~i~Dsn~~~l~~~l~~~G~~v~~~~iv~-D---d-~~i~~al~~a~~~~~DlVittGG 75 (164)
T 3pzy_A 8 RSARVIIASTRASSGEYEDRCGPIITEWLAQQGFSSAQPEVVA-D---G-SPVGEALRKAIDDDVDVILTSGG 75 (164)
T ss_dssp CEEEEEEECHHHHC----CCHHHHHHHHHHHTTCEECCCEEEC-S---S-HHHHHHHHHHHHTTCSEEEEESC
T ss_pred CEEEEEEECCCCCCCceeeHHHHHHHHHHHHCCCEEEEEEEeC-C---H-HHHHHHHHHHHhCCCCEEEECCC
Confidence 478888765432 2 2345778888999999887655554 2 3 66777787776567999998753
No 393
>1gud_A ALBP, D-allose-binding periplasmic protein; periplasmic binding protein, X-RAY crystallography, hinge bending, conformational change; 1.7A {Escherichia coli} SCOP: c.93.1.1 PDB: 1gub_A 1rpj_A*
Probab=30.59 E-value=1e+02 Score=31.13 Aligned_cols=81 Identities=9% Similarity=0.025 Sum_probs=53.7
Q ss_pred cEEEEEEe--cCccccchHHHHHHHHHhcCcEEEEEEecCCCCCCChHHHHHHHHHHhcCCceEEEEEcchh-hHHHHHH
Q 002211 183 GEVIAIFN--DDDQGRNGVTALGDKLAEIRCKISYKSALPPDQSVTETDVRNELVKVRMMEARVIVVHGYSR-TGLMVFD 259 (953)
Q Consensus 183 ~~vaii~~--d~~~g~~~~~~l~~~l~~~g~~v~~~~~~~~~~~~~~~d~~~~l~~i~~~~~~vii~~~~~~-~~~~~~~ 259 (953)
+.|+++.. +++|.....+.+.+++++.|..+....... . .+...-...++.+...+.|.||+..... .....++
T Consensus 2 ~~Igvi~~~~~~~f~~~~~~gi~~~a~~~g~~~~~~~~~~-~--~~~~~~~~~~~~~~~~~vdgiIi~~~~~~~~~~~~~ 78 (288)
T 1gud_A 2 AEYAVVLKTLSNPFWVDMKKGIEDEAKTLGVSVDIFASPS-E--GDFQSQLQLFEDLSNKNYKGIAFAPLSSVNLVMPVA 78 (288)
T ss_dssp CEEEEEESCSSSHHHHHHHHHHHHHHHHHTCCEEEEECSS-T--TCHHHHHHHHHHHHTSSEEEEEECCSSSSTTHHHHH
T ss_pred cEEEEEeCCCCchHHHHHHHHHHHHHHHcCCEEEEeCCCC-C--CCHHHHHHHHHHHHHcCCCEEEEeCCChHHHHHHHH
Confidence 46788875 367777888999999999998876533111 1 1234445567778788899999865432 2234567
Q ss_pred HHHHcCC
Q 002211 260 VAQRLGM 266 (953)
Q Consensus 260 ~a~~~g~ 266 (953)
++.+.|+
T Consensus 79 ~~~~~~i 85 (288)
T 1gud_A 79 RAWKKGI 85 (288)
T ss_dssp HHHHTTC
T ss_pred HHHHCCC
Confidence 7777664
No 394
>3hdv_A Response regulator; PSI-II, structural genomics, Pro structure initiative, NEW YORK SGX research center for STRU genomics, nysgxrc; 2.09A {Pseudomonas putida} SCOP: c.23.1.0
Probab=30.49 E-value=2.5e+02 Score=23.82 Aligned_cols=58 Identities=9% Similarity=-0.023 Sum_probs=38.3
Q ss_pred chHHHHHHHHHhcCcEEEEEEecCCCCCCChHHHHHHHHHHhcCC-ceEEEEEcc--hhhHHHHHHHHHHcC
Q 002211 197 NGVTALGDKLAEIRCKISYKSALPPDQSVTETDVRNELVKVRMME-ARVIVVHGY--SRTGLMVFDVAQRLG 265 (953)
Q Consensus 197 ~~~~~l~~~l~~~g~~v~~~~~~~~~~~~~~~d~~~~l~~i~~~~-~~vii~~~~--~~~~~~~~~~a~~~g 265 (953)
.....+.+.+++.|..|... . +....+..+.... +|+|++... ..++..+++++++.+
T Consensus 18 ~~~~~l~~~L~~~g~~v~~~---~--------~~~~a~~~~~~~~~~dlvi~D~~l~~~~g~~~~~~l~~~~ 78 (136)
T 3hdv_A 18 VNREALILYLKSRGIDAVGA---D--------GAEEARLYLHYQKRIGLMITDLRMQPESGLDLIRTIRASE 78 (136)
T ss_dssp HHHHHHHHHHHHTTCCEEEE---S--------SHHHHHHHHHHCTTEEEEEECSCCSSSCHHHHHHHHHTST
T ss_pred HHHHHHHHHHHHcCceEEEe---C--------CHHHHHHHHHhCCCCcEEEEeccCCCCCHHHHHHHHHhcC
Confidence 35667777888888776531 1 2234455555555 999999754 456788888888864
No 395
>2o20_A Catabolite control protein A; CCPA, transcriptional regulator, helix-turn-helix, transcrip; 1.90A {Lactococcus lactis}
Probab=30.41 E-value=1.3e+02 Score=30.99 Aligned_cols=80 Identities=11% Similarity=-0.046 Sum_probs=54.6
Q ss_pred CCcEEEEEEec--CccccchHHHHHHHHHhcCcEEEEEEecCCCCCCChHHHHHHHHHHhcCCceEEEEEcchhhHHHHH
Q 002211 181 GWGEVIAIFND--DDQGRNGVTALGDKLAEIRCKISYKSALPPDQSVTETDVRNELVKVRMMEARVIVVHGYSRTGLMVF 258 (953)
Q Consensus 181 ~w~~vaii~~d--~~~g~~~~~~l~~~l~~~g~~v~~~~~~~~~~~~~~~d~~~~l~~i~~~~~~vii~~~~~~~~~~~~ 258 (953)
.-+.|+++..+ ++|.......+.+++++.|..+.... .. .+...-...++.+...+.|.||+...... ...+
T Consensus 62 ~~~~Ig~i~~~~~~~~~~~~~~gi~~~~~~~g~~~~~~~---~~--~~~~~~~~~~~~l~~~~vdgiI~~~~~~~-~~~~ 135 (332)
T 2o20_A 62 RTTTVGVILPTITSTYFAAITRGVDDIASMYKYNMILAN---SD--NDVEKEEKVLETFLSKQVDGIVYMGSSLD-EKIR 135 (332)
T ss_dssp CCCEEEEEESCTTCHHHHHHHHHHHHHHHHTTCEEEEEE---CT--TCHHHHHHHHHHHHHTTCSEEEECSSCCC-HHHH
T ss_pred CCCEEEEEeCCCCCcHHHHHHHHHHHHHHHcCCEEEEEE---CC--CChHHHHHHHHHHHhCCCCEEEEeCCCCC-HHHH
Confidence 44679999864 66778889999999999999876542 11 12444556778888889999998764322 2345
Q ss_pred HHHHHcCC
Q 002211 259 DVAQRLGM 266 (953)
Q Consensus 259 ~~a~~~g~ 266 (953)
+.+.+.|.
T Consensus 136 ~~l~~~~i 143 (332)
T 2o20_A 136 TSLKNSRT 143 (332)
T ss_dssp HHHHHHCC
T ss_pred HHHHhCCC
Confidence 55656564
No 396
>3rf7_A Iron-containing alcohol dehydrogenase; structural genomics, joint center for structural genomics, J protein structure initiative, PSI; HET: NAD EPE; 2.12A {Shewanella denitrificans}
Probab=30.37 E-value=84 Score=33.61 Aligned_cols=84 Identities=11% Similarity=0.084 Sum_probs=56.0
Q ss_pred HHHHHHHHcCC---cEEEEEEecCccccchHHHHHHHHHhcCcEEEEEEecCCCCCCChHHHHHHHHHHhcCC---ceEE
Q 002211 172 AIAEMVSYFGW---GEVIAIFNDDDQGRNGVTALGDKLAEIRCKISYKSALPPDQSVTETDVRNELVKVRMME---ARVI 245 (953)
Q Consensus 172 ai~~~l~~~~w---~~vaii~~d~~~g~~~~~~l~~~l~~~g~~v~~~~~~~~~~~~~~~d~~~~l~~i~~~~---~~vi 245 (953)
.+.++++.++. +++.+|+...-... .+.+.+++.|+.+.....+.++ .+.+.+...+..+++.+ +|+|
T Consensus 40 ~l~~~l~~~g~~~~~~~liVtd~~~~~~----~l~~~L~~~g~~~~~f~~v~~~--pt~~~v~~~~~~~~~~~~~~~D~I 113 (375)
T 3rf7_A 40 QLDTVLEQERTDANDFVVFLVDDVHQHK----PLAARVPNKAHDLVIYVNVDDE--PTTVQVDELTAQVKAFNTKLPVSV 113 (375)
T ss_dssp GHHHHHHTTCCSTTCCEEEEEEGGGTTS----HHHHHSCCCTTSEEEEECCSSC--CBHHHHHHHHHHHHHHCSSCCSEE
T ss_pred HHHHHHHHhcccCCCeEEEEECchhhhh----HHHHHHHhcCCeEEEEeCCCCC--CCHHHHHHHHHHHHHhCCCCCCEE
Confidence 36677887763 77878875443322 3667777777776544445555 55778888888888776 9999
Q ss_pred EEEcch--hhHHHHHHHH
Q 002211 246 VVHGYS--RTGLMVFDVA 261 (953)
Q Consensus 246 i~~~~~--~~~~~~~~~a 261 (953)
|-.+.+ -|+.+++...
T Consensus 114 IavGGGS~iD~AK~iA~~ 131 (375)
T 3rf7_A 114 VGLGGGSTMDLAKAVSLM 131 (375)
T ss_dssp EEEESHHHHHHHHHHHHH
T ss_pred EEeCCcHHHHHHHHHHHH
Confidence 988765 4555555444
No 397
>4ep1_A Otcase, ornithine carbamoyltransferase; structural genomics, niaid, national institute of allergy AN infectious diseases; 3.25A {Bacillus anthracis}
Probab=30.31 E-value=4.9e+02 Score=27.10 Aligned_cols=132 Identities=16% Similarity=0.197 Sum_probs=77.5
Q ss_pred EEEeEEEecCCCchhHHHHHHHHHHHHHhcCCCCCCCcEEEEEEecCCCChHHHHHHHHHHHhc--CcEEEEccCChhhH
Q 002211 50 LNVGAIFSFGTVNGQVSRIAMKAAQDDINSDPRVLGGRKLSITMHDAKFNGFLSIMGALQFMET--DTLAIVGPQSAVMA 127 (953)
Q Consensus 50 i~IG~l~~~~~~~g~~~~~a~~lAve~iN~~g~il~g~~l~l~~~D~~~~~~~a~~~a~~li~~--~v~aiiGp~~S~~a 127 (953)
-.|+.+|--.+ ...+.+++.|+.++ +|..+.+...|++-.-.+.+.-+.+-++. .++++=++..
T Consensus 71 K~la~lF~epS---TRTR~SFE~A~~~L-------Gg~vi~l~~~~ss~~kgEsl~DTarvLs~y~D~IviR~~~~---- 136 (340)
T 4ep1_A 71 KILGLIFDKHS---TRTRVSFEAGMVQL-------GGHGMFLNGKEMQMGRGETVSDTAKVLSHYIDGIMIRTFSH---- 136 (340)
T ss_dssp CEEEEEESSCC---HHHHHHHHHHHHHT-------TCEEEEEESCC------CCTTHHHHHHHHHCSEEEEECSCH----
T ss_pred ceEEEEecCCC---ccHHHHHHHHHHHc-------CCeEEEcCcccccCCCCCCHHHHHHHHHHhCCEEEEecCCh----
Confidence 35788887655 36789999999986 35555554434332222223333333443 4555555532
Q ss_pred HHHHHhhhhCCCcEEEeecCCCCCCCCCCCcEEEccCChHHHHHHHHHHH---HHcC---CcEEEEEEecCccccchHHH
Q 002211 128 HVLSHLANELQVPLLSFTALDPTLSPLQYPFFVQTAPNDLYLMSAIAEMV---SYFG---WGEVIAIFNDDDQGRNGVTA 201 (953)
Q Consensus 128 ~av~~v~~~~~vP~Is~~at~~~ls~~~~p~~fr~~p~d~~~~~ai~~~l---~~~~---w~~vaii~~d~~~g~~~~~~ 201 (953)
.++..+++..+||+|.-+. + ...| .+++++++ +++| ..+|+++. |. ......
T Consensus 137 ~~~~~lA~~~~vPVINag~-~-----~~HP------------tQaLaDl~TI~E~~G~l~glkva~vG--D~--~nva~S 194 (340)
T 4ep1_A 137 ADVEELAKESSIPVINGLT-D-----DHHP------------CQALADLMTIYEETNTFKGIKLAYVG--DG--NNVCHS 194 (340)
T ss_dssp HHHHHHHHHCSSCEEEEEC-S-----SCCH------------HHHHHHHHHHHHHHSCCTTCEEEEES--CC--CHHHHH
T ss_pred hHHHHHHHhCCCCEEeCCC-C-----CCCc------------HHHHHHHHHHHHHhCCCCCCEEEEEC--CC--chhHHH
Confidence 3455677788999998432 1 1223 35666663 4444 46777775 22 457888
Q ss_pred HHHHHHhcCcEEEEEE
Q 002211 202 LGDKLAEIRCKISYKS 217 (953)
Q Consensus 202 l~~~l~~~g~~v~~~~ 217 (953)
+...+...|.+|....
T Consensus 195 l~~~~~~~G~~v~~~~ 210 (340)
T 4ep1_A 195 LLLASAKVGMHMTVAT 210 (340)
T ss_dssp HHHHHHHHTCEEEEEC
T ss_pred HHHHHHHcCCEEEEEC
Confidence 8888988998876643
No 398
>3clk_A Transcription regulator; 11017J, PSI-II, NYSGXRC, dimer, structural genomics, protein structure initiative; 2.08A {Lactobacillus plantarum WCFS1}
Probab=30.02 E-value=51 Score=33.49 Aligned_cols=80 Identities=6% Similarity=0.042 Sum_probs=48.1
Q ss_pred CcEEEEEEe--cCccccchHHHHHHHHHhcCcEEEEEEecCCCCCCChHHHHHHHHHHhcCCceEEEEEcchhhHHHHHH
Q 002211 182 WGEVIAIFN--DDDQGRNGVTALGDKLAEIRCKISYKSALPPDQSVTETDVRNELVKVRMMEARVIVVHGYSRTGLMVFD 259 (953)
Q Consensus 182 w~~vaii~~--d~~~g~~~~~~l~~~l~~~g~~v~~~~~~~~~~~~~~~d~~~~l~~i~~~~~~vii~~~~~~~~~~~~~ 259 (953)
-++|+++.. +++|.......+.+++++.|..+... +... .+.......++.+...++|.||+....... ..++
T Consensus 8 ~~~Ig~i~~~~~~~~~~~~~~gi~~~a~~~g~~~~~~--~~~~--~~~~~~~~~~~~l~~~~vdgiI~~~~~~~~-~~~~ 82 (290)
T 3clk_A 8 SNVIAAVVSSVRTNFAQQILDGIQEEAHKNGYNLIIV--YSGS--ADPEEQKHALLTAIERPVMGILLLSIALTD-DNLQ 82 (290)
T ss_dssp CCEEEEECCCCSSSHHHHHHHHHHHHHHTTTCEEEEE--C------------CHHHHHHSSCCSEEEEESCC-----CHH
T ss_pred CCEEEEEeCCCCChHHHHHHHHHHHHHHHcCCeEEEE--eCCC--CCHHHHHHHHHHHHhcCCCEEEEecccCCH-HHHH
Confidence 357888875 46788888999999999999987653 0111 112233456777778899999987654322 4456
Q ss_pred HHHHcCC
Q 002211 260 VAQRLGM 266 (953)
Q Consensus 260 ~a~~~g~ 266 (953)
.+.+.|.
T Consensus 83 ~l~~~~i 89 (290)
T 3clk_A 83 LLQSSDV 89 (290)
T ss_dssp HHHCC--
T ss_pred HHHhCCC
Confidence 6665553
No 399
>3hcw_A Maltose operon transcriptional repressor; RNA-binding, PSI-2, NYSGXRC, STRU genomics, protein structure initiative; 2.20A {Staphylococcus aureus subsp}
Probab=29.82 E-value=3.8e+02 Score=26.70 Aligned_cols=115 Identities=11% Similarity=0.046 Sum_probs=69.1
Q ss_pred EEeEEEecC-CCchhHHHHHHHHHHHHHhcCCCCCCCcEEEEEEecCCCChHHHHHHHHHHHhc-----CcEEEEccCCh
Q 002211 51 NVGAIFSFG-TVNGQVSRIAMKAAQDDINSDPRVLGGRKLSITMHDAKFNGFLSIMGALQFMET-----DTLAIVGPQSA 124 (953)
Q Consensus 51 ~IG~l~~~~-~~~g~~~~~a~~lAve~iN~~g~il~g~~l~l~~~D~~~~~~~a~~~a~~li~~-----~v~aiiGp~~S 124 (953)
+||++.... ......-..|++-|+++- |.++.+ .....+...+.+++.++++. .+.||+. .+.
T Consensus 133 ~I~~i~~~~~~~~~~~R~~Gf~~al~~~--------g~~~~~--~~~~~~~~~~~~~~~~~l~~~~~~~~~~ai~~-~~d 201 (295)
T 3hcw_A 133 ELIFITEKGNFEVSKDRIQGFETVASQF--------NLDYQI--IETSNEREVILNYMQNLHTRLKDPNIKQAIIS-LDA 201 (295)
T ss_dssp EEEEEEESSCCHHHHHHHHHHHHHHHHT--------TCEEEE--EEECSCHHHHHHHHHHHHHHHTCTTSCEEEEE-SSH
T ss_pred cEEEEcCCccchhHHHHHHHHHHHHHHc--------CCCeeE--EeccCCHHHHHHHHHHHHhhcccCCCCcEEEE-CCh
Confidence 677776543 333445567888887763 334442 33345677777788888764 6899997 344
Q ss_pred hhHHHHHHhhhhCCC--c----EEEeecCCCCCCCCCCCcEEEccCChHHHHHHHHHHHH
Q 002211 125 VMAHVLSHLANELQV--P----LLSFTALDPTLSPLQYPFFVQTAPNDLYLMSAIAEMVS 178 (953)
Q Consensus 125 ~~a~av~~v~~~~~v--P----~Is~~at~~~ls~~~~p~~fr~~p~d~~~~~ai~~~l~ 178 (953)
..|..+...+.+.++ | ++++.... +.....|-+-.+..+...+++..++++.
T Consensus 202 ~~A~g~~~al~~~g~~vP~di~vig~D~~~--~~~~~~p~lttv~~~~~~~g~~a~~~l~ 259 (295)
T 3hcw_A 202 MLHLAILSVLYELNIEIPKDVMTATFNDSY--LTEIASPPQTCIDIKPRMLGQQAGSAIL 259 (295)
T ss_dssp HHHHHHHHHHHHTTCCTTTTEEEEEECCSH--HHHTSSSCCEEEECCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCCCCCceEEEEeCChh--HHhhCCCCeeEEEECHHHHHHHHHHHHH
Confidence 556667777776653 4 56554321 2222234455555666777777777753
No 400
>3bil_A Probable LACI-family transcriptional regulator; structural genomics, unknown function, PSI-2, protein structure initiative; 2.50A {Corynebacterium glutamicum atcc 13032}
Probab=29.81 E-value=93 Score=32.60 Aligned_cols=78 Identities=12% Similarity=0.043 Sum_probs=53.2
Q ss_pred cEEEEEEec--CccccchHHHHHHHHHhcCcEEEEEEecCCCCCCChHHHHHHHHHHhcCCceEEEEEcchhhHHHHHHH
Q 002211 183 GEVIAIFND--DDQGRNGVTALGDKLAEIRCKISYKSALPPDQSVTETDVRNELVKVRMMEARVIVVHGYSRTGLMVFDV 260 (953)
Q Consensus 183 ~~vaii~~d--~~~g~~~~~~l~~~l~~~g~~v~~~~~~~~~~~~~~~d~~~~l~~i~~~~~~vii~~~~~~~~~~~~~~ 260 (953)
+.|+++..+ ++|.....+.+.+++++.|..+..... . .+.......++.+...+.|.||+...... ...++.
T Consensus 67 ~~Igvi~~~~~~~~~~~~~~gi~~~a~~~g~~~~~~~~---~--~~~~~~~~~~~~l~~~~vdgiI~~~~~~~-~~~~~~ 140 (348)
T 3bil_A 67 NTIGVIVPSLINHYFAAMVTEIQSTASKAGLATIITNS---N--EDATTMSGSLEFLTSHGVDGIICVPNEEC-ANQLED 140 (348)
T ss_dssp -CEEEEESCSSSHHHHHHHHHHHHHHHHTTCCEEEEEC---T--TCHHHHHHHHHHHHHTTCSCEEECCCGGG-HHHHHH
T ss_pred CEEEEEeCCCCCcHHHHHHHHHHHHHHHcCCEEEEEeC---C--CCHHHHHHHHHHHHhCCCCEEEEeCCCCC-hHHHHH
Confidence 468888854 667778889999999999988765321 1 12444556778888889999998765433 245666
Q ss_pred HHHcCC
Q 002211 261 AQRLGM 266 (953)
Q Consensus 261 a~~~g~ 266 (953)
+.+.|.
T Consensus 141 l~~~~i 146 (348)
T 3bil_A 141 LQKQGM 146 (348)
T ss_dssp HHHC-C
T ss_pred HHhCCC
Confidence 666664
No 401
>2qip_A Protein of unknown function VPA0982; APC85975, vibrio parahaemolyticus RIMD 2210633, STR genomics, PSI-2, protein structure initiative; 1.48A {Vibrio parahaemolyticus}
Probab=29.75 E-value=2.5e+02 Score=25.64 Aligned_cols=95 Identities=6% Similarity=-0.037 Sum_probs=56.4
Q ss_pred HHHHHHHHHcCCcEEEEEEecCccccchHHHHHHHHHhcCcEEEEEEec--CCCCCCChHHHHHHHHHHh-cCCceEEEE
Q 002211 171 SAIAEMVSYFGWGEVIAIFNDDDQGRNGVTALGDKLAEIRCKISYKSAL--PPDQSVTETDVRNELVKVR-MMEARVIVV 247 (953)
Q Consensus 171 ~ai~~~l~~~~w~~vaii~~d~~~g~~~~~~l~~~l~~~g~~v~~~~~~--~~~~~~~~~d~~~~l~~i~-~~~~~vii~ 247 (953)
..+.+.+...|--..+..|. +..+......+.++|...|+++...-.. +.+...+..|..-.+.-+. ....|.+++
T Consensus 36 ~~l~~~~~~~g~l~~~~~Y~-~~~~~~~~~~~~~~L~~~g~~v~~~p~~~~~~~~~k~~~Dv~laiD~~~~a~~~d~~vL 114 (165)
T 2qip_A 36 NQFWYVATQEKEVVSAKAYA-IASNDPKQRQFHHILRGVGFEVMLKPYIQRRDGSAKGDWDVGITLDAIEIAPDVDRVIL 114 (165)
T ss_dssp HHHHHHHTTTEEEEEEEEEE-CCCCCHHHHHHHHHHHHHTCEEEECCCCCCSSCCCSCCCHHHHHHHHHHHGGGCSEEEE
T ss_pred HHHHHHHhcCCEEEEEEEEE-ccCCchhHHHHHHHHHHCCcEEEEEeeeeccCCccCCCccHHHHHHHHHhhccCCEEEE
Confidence 34555555555333444552 2223345678889999999988753211 1111123445433333332 246789999
Q ss_pred EcchhhHHHHHHHHHHc-CC
Q 002211 248 HGYSRTGLMVFDVAQRL-GM 266 (953)
Q Consensus 248 ~~~~~~~~~~~~~a~~~-g~ 266 (953)
.+...+...+++.+++. |.
T Consensus 115 vSgD~DF~plv~~lr~~~G~ 134 (165)
T 2qip_A 115 VSGDGDFSLLVERIQQRYNK 134 (165)
T ss_dssp ECCCGGGHHHHHHHHHHHCC
T ss_pred EECChhHHHHHHHHHHHcCc
Confidence 88888999999999995 84
No 402
>3iv7_A Alcohol dehydrogenase IV; NP_602249.1, iron-containing alcohol dehydrogenase, structur genomics, joint center for structural genomics; HET: MSE; 2.07A {Corynebacterium glutamicum}
Probab=29.56 E-value=36 Score=36.37 Aligned_cols=95 Identities=14% Similarity=0.055 Sum_probs=59.0
Q ss_pred HHHHHHHHHcCCcEEEEEEecCccccchHHHHHHHHHhcCcEEEEEEecCCCCCCChHHHHHHHHHHhcCCceEEEEEcc
Q 002211 171 SAIAEMVSYFGWGEVIAIFNDDDQGRNGVTALGDKLAEIRCKISYKSALPPDQSVTETDVRNELVKVRMMEARVIVVHGY 250 (953)
Q Consensus 171 ~ai~~~l~~~~w~~vaii~~d~~~g~~~~~~l~~~l~~~g~~v~~~~~~~~~~~~~~~d~~~~l~~i~~~~~~vii~~~~ 250 (953)
+.+.++++.+|.+++.+|+....++ ..+.+.+.|+ . .+++. .+.++ .+.+.+...++.+++.++|+||-.+.
T Consensus 26 ~~l~~~l~~~g~~rvliVtd~~~~~--~~~~v~~~L~--~-~~~f~-~v~~~--p~~~~v~~~~~~~~~~~~D~IIavGG 97 (364)
T 3iv7_A 26 AFLKQEVERRGSAKVMVIAGEREMS--IAHKVASEIE--V-AIWHD-EVVMH--VPIEVAERARAVATDNEIDLLVCVGG 97 (364)
T ss_dssp HHHHHHHHHHTCSSEEEECCGGGHH--HHHHHTTTSC--C-SEEEC-CCCTT--CBHHHHHHHHHHHHHTTCCEEEEEES
T ss_pred HHHHHHHHHcCCCEEEEEECCCHHH--HHHHHHHHcC--C-CEEEc-ceecC--CCHHHHHHHHHHHHhcCCCEEEEeCC
Confidence 4567888999999999888654332 2344444443 1 12332 23333 45778888888899999999998876
Q ss_pred h--hhHHHHHHHHHHcCCCCCceEEEEeCc
Q 002211 251 S--RTGLMVFDVAQRLGMMDSGYVWIATTW 278 (953)
Q Consensus 251 ~--~~~~~~~~~a~~~g~~~~~~~wi~~~~ 278 (953)
+ -|+.+++... .+ ..++-|.|..
T Consensus 98 Gs~iD~aK~iA~~--~~---~P~i~IPTTa 122 (364)
T 3iv7_A 98 GSTIGLAKAIAMT--TA---LPIVAIPTTY 122 (364)
T ss_dssp HHHHHHHHHHHHH--HC---CCEEEEECSS
T ss_pred cHHHHHHHHHHhc--cC---CCEEEEcCCc
Confidence 5 4555555432 23 3455666654
No 403
>2qxy_A Response regulator; regulation of transcription, NYSGXRC, protein structure initiative II (PSI II), structural genomics; 1.95A {Thermotoga maritima}
Probab=29.55 E-value=2.2e+02 Score=24.45 Aligned_cols=58 Identities=9% Similarity=0.054 Sum_probs=40.3
Q ss_pred chHHHHHHHHHhcCcEEEEEEecCCCCCCChHHHHHHHHHHhcCCceEEEEEc-chhhHHHHHHHHHHcC
Q 002211 197 NGVTALGDKLAEIRCKISYKSALPPDQSVTETDVRNELVKVRMMEARVIVVHG-YSRTGLMVFDVAQRLG 265 (953)
Q Consensus 197 ~~~~~l~~~l~~~g~~v~~~~~~~~~~~~~~~d~~~~l~~i~~~~~~vii~~~-~~~~~~~~~~~a~~~g 265 (953)
.....+.+.+++.|..|... .+....+..+....+|+|++.. ...++..++++.++..
T Consensus 15 ~~~~~l~~~L~~~g~~v~~~-----------~~~~~a~~~l~~~~~dlvi~d~~~~~~g~~~~~~l~~~~ 73 (142)
T 2qxy_A 15 ITFLAVKNALEKDGFNVIWA-----------KNEQEAFTFLRREKIDLVFVDVFEGEESLNLIRRIREEF 73 (142)
T ss_dssp HHHHHHHHHHGGGTCEEEEE-----------SSHHHHHHHHTTSCCSEEEEECTTTHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHhCCCEEEEE-----------CCHHHHHHHHhccCCCEEEEeCCCCCcHHHHHHHHHHHC
Confidence 45677888888888876521 1234566777778899999986 2235667788888754
No 404
>2b4l_A Glycine betaine-binding protein; substrate-binding protein, closed liganded, ABC-transporter, compatible solutes, transport protein; 2.00A {Bacillus subtilis} PDB: 2b4m_A* 3chg_D
Probab=29.04 E-value=80 Score=31.94 Aligned_cols=58 Identities=17% Similarity=0.247 Sum_probs=36.8
Q ss_pred CCcceEEEecCcccccccEEeeCCcceEEEeeHHHHHHHHHhCCCcccEEEeeCCCCCCCCChHHHHHHHHcCceeEEEe
Q 002211 483 NGRQLRIGVPNRVSYRDFVFKVNGTDIVHGYCIDVFLAAVRLLPYAVPYKFIPYGDGHKNPTYSELINQITTGVFDAAVG 562 (953)
Q Consensus 483 ~g~~lri~v~~~~~~~p~~~~~~~~~~~~G~~~dll~~la~~l~~~~~~~~~~~~~~~~n~~~~~~i~~l~~g~~Di~~~ 562 (953)
++++++||.. +|..- -+...++..+.+.+||++++... ++ .-+...|.+|++|+...
T Consensus 163 ~~~~I~ig~~---~w~e~-----------~~~~~v~~~~Le~~Gy~Ve~~~~--------~~-~~~~~al~~G~iD~~~e 219 (268)
T 2b4l_A 163 KGDKINLAYV---AWDSE-----------IASTNVIGKVLEDLGYEVTLTQV--------EA-GPMWTAIATGSADASLS 219 (268)
T ss_dssp SSCEEEEEEC---CCHHH-----------HHHHHHHHHHHHHHTCEEEEEEC--------CT-THHHHHHHHTSSSEEEE
T ss_pred cCcceEEEcc---CccHH-----------HHHHHHHHHHHHHcCCceEEEEC--------Ch-HHHHHHHHCCCCeEEeh
Confidence 4567888775 33211 11233455566678988777653 22 56678899999999865
Q ss_pred c
Q 002211 563 D 563 (953)
Q Consensus 563 ~ 563 (953)
.
T Consensus 220 ~ 220 (268)
T 2b4l_A 220 A 220 (268)
T ss_dssp E
T ss_pred h
Confidence 3
No 405
>3rvy_A ION transport protein; tetrameric ION channel, voltage-gated sodium-selective ION C membrane, metal transport; HET: PX4; 2.70A {Arcobacter butzleri} PDB: 3rvz_A* 4ekw_A* 3rw0_A*
Probab=28.84 E-value=30 Score=35.43 Aligned_cols=58 Identities=7% Similarity=0.079 Sum_probs=41.4
Q ss_pred cccchhhHHHHHHHhhccccC----Ccccc----hhHHHHHHHHHHHHHhhhhcccceeeeeeecc
Q 002211 640 RKQIVTVLWFSFSTMFFAHRE----NTVST----LGRVVLIIWLFVVLIITSSYTASLTSILTVQQ 697 (953)
Q Consensus 640 ~~~~~~~~~~~~~~l~~~~~~----~~~s~----~~R~l~~~w~~~~lil~~~Yta~L~s~Lt~~~ 697 (953)
..++.+++|..+.++...+-. .|... +.+++..+.++.++++.+.++|-+.+-+....
T Consensus 178 F~s~~~a~~~~~~~~T~~g~~~di~~p~~~~~~~~~~~f~~~~~i~~~~~lnl~~aii~~~f~~~~ 243 (285)
T 3rvy_A 178 FGTLGESFYTLFQVMTLESWSMGIVRPLMEVYPYAWVFFIPFIFVVTFVMINLVVAICVDAMAILN 243 (285)
T ss_dssp HSSHHHHHHHHHHHHTTTTCCCCCHHHHHTTCTTTHHHHHHHHHHHHHHHHHHHHHHHHHHC----
T ss_pred cCCHHHHHHHHHHHHHhCCCcHHHHHHHHHcCChHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 346888999999999877533 23322 34777788888889999999999988876544
No 406
>2zay_A Response regulator receiver protein; structural genomics, NYSGXRC, target 11006U, protein structure initiative; 2.00A {Desulfuromonas acetoxidans}
Probab=28.56 E-value=2.8e+02 Score=23.85 Aligned_cols=56 Identities=11% Similarity=0.131 Sum_probs=36.4
Q ss_pred chHHHHHHHHHhcCcEEEEEEecCCCCCCChHHHHHHHHHHhcCCceEEEEEcc--hhhHHHHHHHHHH
Q 002211 197 NGVTALGDKLAEIRCKISYKSALPPDQSVTETDVRNELVKVRMMEARVIVVHGY--SRTGLMVFDVAQR 263 (953)
Q Consensus 197 ~~~~~l~~~l~~~g~~v~~~~~~~~~~~~~~~d~~~~l~~i~~~~~~vii~~~~--~~~~~~~~~~a~~ 263 (953)
.....+.+.+++.|..|.. .. +....+..++...+|+||+... ..++..++++.++
T Consensus 19 ~~~~~l~~~L~~~g~~v~~---~~--------~~~~a~~~l~~~~~dlii~d~~l~~~~g~~~~~~l~~ 76 (147)
T 2zay_A 19 PALAASISALSQEGFDIIQ---CG--------NAIEAVPVAVKTHPHLIITEANMPKISGMDLFNSLKK 76 (147)
T ss_dssp GGGHHHHHHHHHHTEEEEE---ES--------SHHHHHHHHHHHCCSEEEEESCCSSSCHHHHHHHHHT
T ss_pred HHHHHHHHHHHHcCCeEEE---eC--------CHHHHHHHHHcCCCCEEEEcCCCCCCCHHHHHHHHHc
Confidence 3456666777777876652 11 2234455555567999999754 3467788888887
No 407
>2j48_A Two-component sensor kinase; pseudo-receiver, circadian clock, transferase, response regulator, histidine protein kinase; NMR {Synechococcus elongatus}
Probab=28.45 E-value=1.9e+02 Score=23.50 Aligned_cols=58 Identities=14% Similarity=0.200 Sum_probs=38.2
Q ss_pred chHHHHHHHHHhcCcEEEEEEecCCCCCCChHHHHHHHHHHhcCCceEEEEEcch--hhHHHHHHHHHHcC
Q 002211 197 NGVTALGDKLAEIRCKISYKSALPPDQSVTETDVRNELVKVRMMEARVIVVHGYS--RTGLMVFDVAQRLG 265 (953)
Q Consensus 197 ~~~~~l~~~l~~~g~~v~~~~~~~~~~~~~~~d~~~~l~~i~~~~~~vii~~~~~--~~~~~~~~~a~~~g 265 (953)
...+.+.+.+++.|..+... . +....+..++...+|++++.... .+...++++.++..
T Consensus 12 ~~~~~l~~~l~~~g~~v~~~---~--------~~~~~~~~l~~~~~dlii~d~~~~~~~~~~~~~~l~~~~ 71 (119)
T 2j48_A 12 EAATVVCEMLTAAGFKVIWL---V--------DGSTALDQLDLLQPIVILMAWPPPDQSCLLLLQHLREHQ 71 (119)
T ss_dssp HHHHHHHHHHHHTTCEEEEE---S--------CHHHHHHHHHHHCCSEEEEECSTTCCTHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHhCCcEEEEe---c--------CHHHHHHHHHhcCCCEEEEecCCCCCCHHHHHHHHHhcc
Confidence 45667778888888876531 1 12334555555679999997653 45778888888754
No 408
>3rhg_A Putative phophotriesterase; hydrolase, amidohydrolase, zinc binding site, enzyme functio initiative, EFI; HET: SO4; 1.53A {Proteus mirabilis}
Probab=28.43 E-value=5.4e+02 Score=27.04 Aligned_cols=160 Identities=12% Similarity=-0.012 Sum_probs=83.6
Q ss_pred CChHHHHHHHHHHHhcCcEEEEccC-C---hhhHHHHHHhhhhCCCcEEEeecCCCCCCCCCCCcEEEccCChHHHHHHH
Q 002211 98 FNGFLSIMGALQFMETDTLAIVGPQ-S---AVMAHVLSHLANELQVPLLSFTALDPTLSPLQYPFFVQTAPNDLYLMSAI 173 (953)
Q Consensus 98 ~~~~~a~~~a~~li~~~v~aiiGp~-~---S~~a~av~~v~~~~~vP~Is~~at~~~ls~~~~p~~fr~~p~d~~~~~ai 173 (953)
.+...++....++.+.||..||++. + ......+..++++.++-++...... ....+|..+.. +. +.+
T Consensus 72 ~~~~~~~~el~~~~~aGv~tiV~~~g~~g~~r~~~~l~~la~~~gi~i~~~tG~y---~~~~~P~~~~~--~~----~~L 142 (365)
T 3rhg_A 72 KPIEDVIFELNNFKELGGKTIVDATGSSSIGRDIRKLKQVAELTGINVVASSGLY---IEKFEGKRLAD--DI----DAM 142 (365)
T ss_dssp CCHHHHHHHHHHHHHTTEEEEEECCCSGGGTCCHHHHHHHHHHHCCEEECEECCC---CHHHHGGGGGS--CH----HHH
T ss_pred ccHHHHHHHHHHHHhcCCCeEEEcCCCCCCCCCHHHHHHHHHHHCCcEEEEeCcc---CCCCCchhhcC--CH----HHH
Confidence 3677888888888888999999987 2 3456677788888887665433221 00111433332 22 334
Q ss_pred HHHHHH--------cCCcE--EEEEEecCccccchHHHHHHHHH---hc-CcEEEEEEecCCCCCCChHHHHHHHHHHhc
Q 002211 174 AEMVSY--------FGWGE--VIAIFNDDDQGRNGVTALGDKLA---EI-RCKISYKSALPPDQSVTETDVRNELVKVRM 239 (953)
Q Consensus 174 ~~~l~~--------~~w~~--vaii~~d~~~g~~~~~~l~~~l~---~~-g~~v~~~~~~~~~~~~~~~d~~~~l~~i~~ 239 (953)
++++.+ -+.+- |+-+..|......-...|..+++ +. |..|.... +.. .+.....+.-+++
T Consensus 143 ~~~~~~ei~~gi~~t~vkag~IGEiGld~~~t~~q~~~f~aq~~~A~~~~glPV~iH~--~r~----~~a~~e~l~iL~e 216 (365)
T 3rhg_A 143 AKMIDDELNIGIDGTDIRAGMIGEIGVSPFFTDGEKNSLRAAALAQNNNPYASMNIHM--PGW----QRRGDEVLDILLT 216 (365)
T ss_dssp HHHHHHHHHTCSTTSSCCCCEEEEEECCTTCCHHHHHHHHHHHHHHTTCTTCEEEEEC--CTT----SCCHHHHHHHHTT
T ss_pred HHHHHHHHHhccccCCceeEEEEEEEcCCCCCHHHHHHHHHHHHHHHHhcCCcEEEEC--CCC----CcCHHHHHHHHHh
Confidence 433321 12232 22344453333333445555544 44 66666542 111 0122334555554
Q ss_pred C-Cc---eEEEEEcchh-hHHHHHHHHHHcCCCCCceEEEEeCc
Q 002211 240 M-EA---RVIVVHGYSR-TGLMVFDVAQRLGMMDSGYVWIATTW 278 (953)
Q Consensus 240 ~-~~---~vii~~~~~~-~~~~~~~~a~~~g~~~~~~~wi~~~~ 278 (953)
. +. ++++.|+... .-....+++.++|. ||.-++
T Consensus 217 ~~~~~~~~vvi~H~~rs~~~~e~a~~~l~~G~------~I~~~g 254 (365)
T 3rhg_A 217 EMGCDPAKISLAHSDPSGKDIDYQCKMLDRGV------WLEFDM 254 (365)
T ss_dssp TTCCCGGGEEESCCGGGTTCHHHHHHHHHTTC------EEEECC
T ss_pred ccCCCCCceEEecCCCCCCCHHHHHHHHhCCC------EEEecC
Confidence 3 32 4777898843 34455566666673 555554
No 409
>3c3m_A Response regulator receiver protein; structural genomics, unknown function, PSI-2, protein struct initiative; HET: MSE; 1.70A {Methanoculleus marisnigri JR1}
Probab=28.28 E-value=2.4e+02 Score=24.13 Aligned_cols=58 Identities=7% Similarity=-0.089 Sum_probs=38.3
Q ss_pred chHHHHHHHHHhcCcEEEEEEecCCCCCCChHHHHHHHHHHhcCCceEEEEEcch--hhHHHHHHHHHHcC
Q 002211 197 NGVTALGDKLAEIRCKISYKSALPPDQSVTETDVRNELVKVRMMEARVIVVHGYS--RTGLMVFDVAQRLG 265 (953)
Q Consensus 197 ~~~~~l~~~l~~~g~~v~~~~~~~~~~~~~~~d~~~~l~~i~~~~~~vii~~~~~--~~~~~~~~~a~~~g 265 (953)
.....+...+++.|..+.. .. +....+..+....+|+|++.... .++..++++.++..
T Consensus 14 ~~~~~l~~~L~~~g~~v~~---~~--------~~~~al~~l~~~~~dlvi~D~~l~~~~g~~~~~~l~~~~ 73 (138)
T 3c3m_A 14 MIVDVFVTMLERGGYRPIT---AF--------SGEECLEALNATPPDLVLLDIMMEPMDGWETLERIKTDP 73 (138)
T ss_dssp HHHHHHHHHHHHTTCEEEE---ES--------SHHHHHHHHHHSCCSEEEEESCCSSSCHHHHHHHHHHST
T ss_pred HHHHHHHHHHHHcCceEEE---eC--------CHHHHHHHHhccCCCEEEEeCCCCCCCHHHHHHHHHcCc
Confidence 3556777778777877652 11 22344556666789999997653 45778888888753
No 410
>2hsg_A Glucose-resistance amylase regulator; CCPA, transcriptional regulator, transcription regulator; 2.50A {Bacillus megaterium} SCOP: a.35.1.5 c.93.1.1 PDB: 1rzr_G 2jcg_A 1zvv_A 3oqo_A* 3oqm_A* 3oqn_A*
Probab=28.12 E-value=1e+02 Score=31.89 Aligned_cols=79 Identities=10% Similarity=-0.035 Sum_probs=53.4
Q ss_pred CcEEEEEEe--cCccccchHHHHHHHHHhcCcEEEEEEecCCCCCCChHHHHHHHHHHhcCCceEEEEEcchhhHHHHHH
Q 002211 182 WGEVIAIFN--DDDQGRNGVTALGDKLAEIRCKISYKSALPPDQSVTETDVRNELVKVRMMEARVIVVHGYSRTGLMVFD 259 (953)
Q Consensus 182 w~~vaii~~--d~~~g~~~~~~l~~~l~~~g~~v~~~~~~~~~~~~~~~d~~~~l~~i~~~~~~vii~~~~~~~~~~~~~ 259 (953)
-+.|+++.. +++|.....+.+.+++++.|..+.... .. .+...-...++.+...+.|.||+....... ..++
T Consensus 60 ~~~Ig~i~~~~~~~~~~~~~~gi~~~a~~~g~~~~~~~---~~--~~~~~~~~~~~~l~~~~vdgiI~~~~~~~~-~~~~ 133 (332)
T 2hsg_A 60 TTTVGVIIPDISNIFYAELARGIEDIATMYKYNIILSN---SD--QNQDKELHLLNNMLGKQVDGIIFMSGNVTE-EHVE 133 (332)
T ss_dssp CCEEEEEEC--CCSHHHHHHHHHHHHHHHHTCEEEEEE---CC--SHHHHHHHHHHHTSCCSSCCEEECCSSCCH-HHHH
T ss_pred CCEEEEEeCCCCCcHHHHHHHHHHHHHHHcCCEEEEEe---CC--CChHHHHHHHHHHHhCCCcEEEEecCCCCH-HHHH
Confidence 357898885 467888889999999999999876532 11 113334556777777899999987643322 4555
Q ss_pred HHHHcCC
Q 002211 260 VAQRLGM 266 (953)
Q Consensus 260 ~a~~~g~ 266 (953)
.+.+.|.
T Consensus 134 ~l~~~~i 140 (332)
T 2hsg_A 134 ELKKSPV 140 (332)
T ss_dssp HHTTSSS
T ss_pred HHHhCCC
Confidence 6655553
No 411
>3miz_A Putative transcriptional regulator protein, LACI family; LACL family, protein structure initiative II (PSI II), NYSGXRC, structural genomics; 1.91A {Rhizobium etli}
Probab=27.37 E-value=1.8e+02 Score=29.38 Aligned_cols=84 Identities=7% Similarity=-0.130 Sum_probs=54.3
Q ss_pred HHHHHcCCcEEEEEEec--Ccccc-chHHHHHHHHHhcCcEEEEEEecCCCCCCChHHHHHHHHHHhcCCceEEEEEcch
Q 002211 175 EMVSYFGWGEVIAIFND--DDQGR-NGVTALGDKLAEIRCKISYKSALPPDQSVTETDVRNELVKVRMMEARVIVVHGYS 251 (953)
Q Consensus 175 ~~l~~~~w~~vaii~~d--~~~g~-~~~~~l~~~l~~~g~~v~~~~~~~~~~~~~~~d~~~~l~~i~~~~~~vii~~~~~ 251 (953)
.-++.-.-+.|+++..+ +.|.. .....+.+++++.|..+..... . .+...-...++.+.+.+.|.||+....
T Consensus 6 r~L~~~~s~~Igvi~~~~~~~~~~~~~~~gi~~~a~~~g~~~~~~~~-~----~~~~~~~~~~~~l~~~~vdGiIi~~~~ 80 (301)
T 3miz_A 6 RLIRSSRSNTFGIITDYVSTTPYSVDIVRGIQDWANANGKTILIANT-G----GSSEREVEIWKMFQSHRIDGVLYVTMY 80 (301)
T ss_dssp ------CCCEEEEEESSTTTCCSCHHHHHHHHHHHHHTTCEEEEEEC-T----TCHHHHHHHHHHHHHTTCSEEEEEEEE
T ss_pred HHHhhCCCCEEEEEeCCCcCcccHHHHHHHHHHHHHHCCCEEEEEeC-C----CChHHHHHHHHHHHhCCCCEEEEecCC
Confidence 33444455789999865 46667 8999999999999998875431 1 124555677888888999999987654
Q ss_pred hhHHHHHHHHHHcC
Q 002211 252 RTGLMVFDVAQRLG 265 (953)
Q Consensus 252 ~~~~~~~~~a~~~g 265 (953)
... .++.+.+.|
T Consensus 81 ~~~--~~~~~~~~~ 92 (301)
T 3miz_A 81 RRI--VDPESGDVS 92 (301)
T ss_dssp EEE--CCCCCTTCC
T ss_pred ccH--HHHHHHhCC
Confidence 332 334444444
No 412
>3jvd_A Transcriptional regulators; structural genomics, PSI-2, sugar binding protein, transcrip regulation, protein structure initiative; 2.30A {Corynebacterium glutamicum}
Probab=27.36 E-value=5.1e+02 Score=26.41 Aligned_cols=116 Identities=12% Similarity=0.072 Sum_probs=69.9
Q ss_pred EEEeEEEecC-CCchhHHHHHHHHHHHHHhcCCCCCCCcEEEEEEecCCCChHHHHHHHHHHHhcC-cEEEEccCChhhH
Q 002211 50 LNVGAIFSFG-TVNGQVSRIAMKAAQDDINSDPRVLGGRKLSITMHDAKFNGFLSIMGALQFMETD-TLAIVGPQSAVMA 127 (953)
Q Consensus 50 i~IG~l~~~~-~~~g~~~~~a~~lAve~iN~~g~il~g~~l~l~~~D~~~~~~~a~~~a~~li~~~-v~aiiGp~~S~~a 127 (953)
=+||++.... ......-..|++-|+++. |.+ .+......+...+.+++.+++.++ +.||+.. +...+
T Consensus 175 ~~I~~i~~~~~~~~~~~R~~Gf~~al~~~--------g~~--~~~~~~~~~~~~~~~~~~~ll~~~~~~ai~~~-nd~~A 243 (333)
T 3jvd_A 175 MNIAALVGEESLSTTQERMRGISHAASIY--------GAE--VTFHFGHYSVESGEEMAQVVFNNGLPDALIVA-SPRLM 243 (333)
T ss_dssp CEEEEEESCTTSHHHHHHHHHHHHHHHHT--------TCE--EEEEECCSSHHHHHHHHHHHHHTCCCSEEEEC-CHHHH
T ss_pred CeEEEEeCCCCCccHHHHHHHHHHHHHHC--------CCC--EEEecCCCCHHHHHHHHHHHhcCCCCcEEEEC-CHHHH
Confidence 3577776543 223445567777777763 223 222215567788888888888774 8899974 44556
Q ss_pred HHHHHhhhhCCC--c----EEEeecCCCCCCCCCCCcEEEccCChHHHHHHHHHHHH
Q 002211 128 HVLSHLANELQV--P----LLSFTALDPTLSPLQYPFFVQTAPNDLYLMSAIAEMVS 178 (953)
Q Consensus 128 ~av~~v~~~~~v--P----~Is~~at~~~ls~~~~p~~fr~~p~d~~~~~ai~~~l~ 178 (953)
..+...+.+.++ | ++++.... +.....|-+-.+..+...++...++++.
T Consensus 244 ~g~~~al~~~G~~vP~disvig~D~~~--~~~~~~p~lttv~~~~~~~g~~Av~~L~ 298 (333)
T 3jvd_A 244 AGVMRAFTRLNVRVPHDVVIGGYDDPE--WYSFVGAGITTFVPPHEEMGKEAVRLLV 298 (333)
T ss_dssp HHHHHHHHHTTCCTTTTCEEEEESCCG--GGGGSTTSCEEEECCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCCCCCceEEEEECChH--HHHhcCCCceEEecCHHHHHHHHHHHHH
Confidence 666666666653 3 67664332 3332234455556677777887777754
No 413
>4ecf_A ABC-type phosphate transport system, periplasmic; ABC transporter, phosphate transport receptor; HET: MSE; 1.55A {Lactobacillus brevis}
Probab=27.30 E-value=86 Score=31.51 Aligned_cols=71 Identities=7% Similarity=-0.037 Sum_probs=47.6
Q ss_pred eeHHHHHHHHHhC-CCcccEEEeeCCCCCCCCChHHHHHHHHcCceeEEEecEEEecC---ccceeeccccceecceEEE
Q 002211 513 YCIDVFLAAVRLL-PYAVPYKFIPYGDGHKNPTYSELINQITTGVFDAAVGDIAIVTN---RTKAVDFTQPYIESGLVVV 588 (953)
Q Consensus 513 ~~~dll~~la~~l-~~~~~~~~~~~~~~~~n~~~~~~i~~l~~g~~Di~~~~~~~t~~---r~~~vdft~p~~~~~~~~~ 588 (953)
+.-++++.+.++. +.++.+.. ++-.+.+.+|.+|++|+++.+..+..+ ....+ ...|+..++++++
T Consensus 17 ~l~~~~~~f~~~~P~v~i~v~~---------~~S~~~~~~l~~g~~Dig~~~~~~~~~e~~~~~~l-~~~~i~~d~lvvv 86 (264)
T 4ecf_A 17 LVEAAGEQYTGEHLGTFINVQG---------GGTGTGLSQIQEGAVQIGNSDLFAGEQKGINARQL-VDHRVAVVGITPI 86 (264)
T ss_dssp HHHHHHHHHHHHSTTEEEEEEE---------ECHHHHHHHHHHTSSSEEEESSCGGGSTTCCGGGE-ECCEEEEEEEEEE
T ss_pred HHHHHHHHHHHHCCCceEEEEe---------CCCHHHHHHHHcCCCchhhccCCCChhHHhhccCC-EEEEEEEEEEEEE
Confidence 3456777787777 54444433 346788999999999998875443321 01122 3678999999999
Q ss_pred Eeccc
Q 002211 589 APVRK 593 (953)
Q Consensus 589 v~~~~ 593 (953)
++...
T Consensus 87 v~~~~ 91 (264)
T 4ecf_A 87 VNKKV 91 (264)
T ss_dssp ECTTS
T ss_pred EcCCC
Confidence 98765
No 414
>3o1i_D Periplasmic protein TORT; ligand free, two component sensor, periplasmic binding prote signaling protein; HET: PE4; 2.80A {Vibrio parahaemolyticus} PDB: 3o1h_B* 3o1j_C
Probab=27.08 E-value=66 Score=32.74 Aligned_cols=80 Identities=9% Similarity=-0.051 Sum_probs=55.3
Q ss_pred cEEEEEEec--CccccchHHHHHHHHHhcCcEEEEEEecCCCCCCChHHHHHHHHHHhcCCceEEEEEcchhh-HHHHHH
Q 002211 183 GEVIAIFND--DDQGRNGVTALGDKLAEIRCKISYKSALPPDQSVTETDVRNELVKVRMMEARVIVVHGYSRT-GLMVFD 259 (953)
Q Consensus 183 ~~vaii~~d--~~~g~~~~~~l~~~l~~~g~~v~~~~~~~~~~~~~~~d~~~~l~~i~~~~~~vii~~~~~~~-~~~~~~ 259 (953)
++|+++..+ ++|.......+.+++++.|..+.....-.. .+...-...++.+.+.++|.||+...... ....++
T Consensus 6 ~~Igvi~~~~~~~~~~~~~~g~~~~a~~~g~~~~~~~~~~~---~~~~~~~~~~~~~~~~~vdgiii~~~~~~~~~~~~~ 82 (304)
T 3o1i_D 6 EKICAIYPHLKDSYWLSVNYGMVSEAEKQGVNLRVLEAGGY---PNKSRQEQQLALCTQWGANAIILGTVDPHAYEHNLK 82 (304)
T ss_dssp CEEEEEESCSCSHHHHHHHHHHHHHHHHHTCEEEEEECSST---TCHHHHHHHHHHHHHHTCSEEEECCSSTTSSTTTHH
T ss_pred cEEEEEeCCCCCcHHHHHHHHHHHHHHHcCCeEEEEcCCCC---CCHHHHHHHHHHHHHcCCCEEEEeCCChhHHHHHHH
Confidence 578888854 667788899999999999998876432211 12455667788888889999998755433 234466
Q ss_pred HHHHcCC
Q 002211 260 VAQRLGM 266 (953)
Q Consensus 260 ~a~~~g~ 266 (953)
++. .|+
T Consensus 83 ~~~-~~i 88 (304)
T 3o1i_D 83 SWV-GNT 88 (304)
T ss_dssp HHT-TTS
T ss_pred HHc-CCC
Confidence 665 554
No 415
>3qbe_A 3-dehydroquinate synthase; shikimate pathway, mycobacte tuberculosis, nicotinamide adenine dinucleotide (NAD)-depen enzyme; 2.07A {Mycobacterium tuberculosis} PDB: 3qbd_A
Probab=26.98 E-value=2.1e+02 Score=30.28 Aligned_cols=110 Identities=13% Similarity=0.061 Sum_probs=66.6
Q ss_pred CcEEEccCChHHHHHHHHHHHHHcCCcEEEEEEecCccccchHHHHHHHHHhcCcEEEEEEecCCCC-CCChHHHHHHHH
Q 002211 157 PFFVQTAPNDLYLMSAIAEMVSYFGWGEVIAIFNDDDQGRNGVTALGDKLAEIRCKISYKSALPPDQ-SVTETDVRNELV 235 (953)
Q Consensus 157 p~~fr~~p~d~~~~~ai~~~l~~~~w~~vaii~~d~~~g~~~~~~l~~~l~~~g~~v~~~~~~~~~~-~~~~~d~~~~l~ 235 (953)
||-+...+.... .+.++++.. +++.+|+....+. ..+.+.+.|++.|+.+... .++.+. ..+.+.+...++
T Consensus 23 ~~~I~~G~g~l~---~l~~~l~~~--~rvlIVtd~~v~~--~~~~v~~~L~~~g~~~~~~-~~~~gE~~kt~~~v~~~~~ 94 (368)
T 3qbe_A 23 PYPVVIGTGLLD---ELEDLLADR--HKVAVVHQPGLAE--TAEEIRKRLAGKGVDAHRI-EIPDAEAGKDLPVVGFIWE 94 (368)
T ss_dssp CEEEEEESCCHH---HHHHHHTTC--SEEEEEECGGGHH--HHHHHHHHHHHTTCEEEEE-ECCSGGGGGBHHHHHHHHH
T ss_pred CceEEEcCCHHH---HHHHHHHcC--CEEEEEECccHHH--HHHHHHHHHHhcCCcceEE-EeCCCCCCCCHHHHHHHHH
Confidence 555555554432 345555543 8999998665543 3678899999999876432 344331 123455666666
Q ss_pred HHhcC---CceEEEEEcch--hhHHHHHHHHHHcCCCCCceEEEEeC
Q 002211 236 KVRMM---EARVIVVHGYS--RTGLMVFDVAQRLGMMDSGYVWIATT 277 (953)
Q Consensus 236 ~i~~~---~~~vii~~~~~--~~~~~~~~~a~~~g~~~~~~~wi~~~ 277 (953)
.+++. +.|+||..+.+ -|...++......| -.++-|.|.
T Consensus 95 ~l~~~~~~r~d~IIavGGGsv~D~ak~~Aa~~~rg---ip~i~IPTT 138 (368)
T 3qbe_A 95 VLGRIGIGRKDALVSLGGGAATDVAGFAAATWLRG---VSIVHLPTT 138 (368)
T ss_dssp HHHHHTCCTTCEEEEEESHHHHHHHHHHHHHGGGC---CEEEEEECS
T ss_pred HHHHcCCCCCcEEEEECChHHHHHHHHHHHHhccC---CcEEEECCC
Confidence 66653 47999887665 56666666555445 345556655
No 416
>1xah_A Sadhqs, 3-dehydroquinate synthase; shikimate pathway, aromatic amino acid biosynthesis, open form, form B, domain movement, cyclase; HET: NAD; 2.20A {Staphylococcus aureus} PDB: 1xag_A* 1xai_A* 1xaj_A* 1xal_A*
Probab=26.46 E-value=96 Score=32.81 Aligned_cols=97 Identities=12% Similarity=0.128 Sum_probs=55.0
Q ss_pred HHHHHHHcCCcEEEEEEecCccccchHHHHHHHHHhcCcEEEEEEecCCC-CCCChHHHHHHHHHHhcCCc---eEEEEE
Q 002211 173 IAEMVSYFGWGEVIAIFNDDDQGRNGVTALGDKLAEIRCKISYKSALPPD-QSVTETDVRNELVKVRMMEA---RVIVVH 248 (953)
Q Consensus 173 i~~~l~~~~w~~vaii~~d~~~g~~~~~~l~~~l~~~g~~v~~~~~~~~~-~~~~~~d~~~~l~~i~~~~~---~vii~~ 248 (953)
+.++++.+ +++.+|+....+.. ..+.+.+.| +.| ++.. ..++.. ...+.+.+...++.+++.++ |+||..
T Consensus 24 l~~~l~~~--~~~liVtd~~~~~~-~~~~v~~~L-~~g-~~~~-~~~~~~e~~p~~~~v~~~~~~~~~~~~~r~d~iIav 97 (354)
T 1xah_A 24 IGTYLNQF--DQSFLLIDEYVNQY-FANKFDDIL-SYE-NVHK-VIIPAGEKTKTFEQYQETLEYILSHHVTRNTAIIAV 97 (354)
T ss_dssp HHHHHTTC--SCEEEEEEHHHHHH-HHHHHC--------CEEE-EEECSGGGGCSHHHHHHHHHHHHTTCCCTTCEEEEE
T ss_pred HHHHHHhc--CeEEEEECCcHHHH-HHHHHHHHH-hcC-CeEE-EEECCCCCCCCHHHHHHHHHHHHHcCCCCCceEEEE
Confidence 44555555 88998886544333 566777777 666 3322 123322 11346778888888888888 899877
Q ss_pred cch--hhHHHHHHHHHHcCCCCCceEEEEeCc
Q 002211 249 GYS--RTGLMVFDVAQRLGMMDSGYVWIATTW 278 (953)
Q Consensus 249 ~~~--~~~~~~~~~a~~~g~~~~~~~wi~~~~ 278 (953)
+.+ -|+..++......| ..++-|.|..
T Consensus 98 GGGsv~D~ak~vA~~~~rg---ip~i~IPTT~ 126 (354)
T 1xah_A 98 GGGATGDFAGFVAATLLRG---VHFIQVPTTI 126 (354)
T ss_dssp ESHHHHHHHHHHHHHBTTC---CEEEEEECST
T ss_pred CChHHHHHHHHHHHHhccC---CCEEEECCcc
Confidence 654 56666666554433 3556666654
No 417
>1xrs_B D-lysine 5,6-aminomutase beta subunit; TIM barrel, rossmann domain, PLP, cobalamin, 5'-deoxyad radical, adenosylcobalamin; HET: B12 PLP 5AD; 2.80A {Clostridium sticklandii} SCOP: c.23.6.1 d.230.4.1
Probab=25.84 E-value=3.3e+02 Score=27.19 Aligned_cols=86 Identities=14% Similarity=0.121 Sum_probs=51.5
Q ss_pred EEEEEEecCccccchHHHHHHH--------HHhc-CcEEEEEEecCCCCCCChHHHHHHHHHHhcCCceEEEEEcch---
Q 002211 184 EVIAIFNDDDQGRNGVTALGDK--------LAEI-RCKISYKSALPPDQSVTETDVRNELVKVRMMEARVIVVHGYS--- 251 (953)
Q Consensus 184 ~vaii~~d~~~g~~~~~~l~~~--------l~~~-g~~v~~~~~~~~~~~~~~~d~~~~l~~i~~~~~~vii~~~~~--- 251 (953)
+|.+-....+.=.-+...+... |+.. |.+|.+--. . ......+..+++.++|+|.+.+..
T Consensus 122 ~Vvlatv~gD~HdiG~~iv~~~k~~~~~~~L~~~~G~eVi~LG~---~-----vp~e~iv~aa~e~~~d~VglS~l~t~~ 193 (262)
T 1xrs_B 122 VVVGASTGTDAHTVGIDAIMNMKGYAGHYGLERYEMIDAYNLGS---Q-----VANEDFIKKAVELEADVLLVSQTVTQK 193 (262)
T ss_dssp EEEEEEBTTCCCCHHHHHHHSTTCBTTBCCGGGCTTEEEEECCS---S-----BCHHHHHHHHHHTTCSEEEEECCCCTT
T ss_pred EEEEEeCCCCCchHHHHHHhhhhcccchHHHHhcCCcEEEECCC---C-----CCHHHHHHHHHHcCCCEEEEEeecCCc
Confidence 4444444433333344555555 8888 999876321 1 123456777777899999998743
Q ss_pred ----hhHHHHHHHHHHcCCCCCceEEEEeC
Q 002211 252 ----RTGLMVFDVAQRLGMMDSGYVWIATT 277 (953)
Q Consensus 252 ----~~~~~~~~~a~~~g~~~~~~~wi~~~ 277 (953)
.....+++++++.|+...-.+++++.
T Consensus 194 ~~~~~~~~~~i~~L~~~g~~~~i~vivGG~ 223 (262)
T 1xrs_B 194 NVHIQNMTHLIELLEAEGLRDRFVLLCGGP 223 (262)
T ss_dssp SHHHHHHHHHHHHHHHTTCGGGSEEEEECT
T ss_pred cchHHHHHHHHHHHHhcCCCCCCEEEEECC
Confidence 34566788888888643233444443
No 418
>2bon_A Lipid kinase; DAG kinase, transferase; 1.90A {Escherichia coli} SCOP: e.52.1.2 PDB: 2jgr_A 2p1r_A
Probab=25.83 E-value=1.7e+02 Score=30.48 Aligned_cols=75 Identities=13% Similarity=0.030 Sum_probs=48.5
Q ss_pred cEEEEEEecCc-cccchHHHHHHHHHhcCcEEEEEEecCCCCCCChHHHHHHHHHHhcCCceEEEEEcchhhHHHHHHHH
Q 002211 183 GEVIAIFNDDD-QGRNGVTALGDKLAEIRCKISYKSALPPDQSVTETDVRNELVKVRMMEARVIVVHGYSRTGLMVFDVA 261 (953)
Q Consensus 183 ~~vaii~~d~~-~g~~~~~~l~~~l~~~g~~v~~~~~~~~~~~~~~~d~~~~l~~i~~~~~~vii~~~~~~~~~~~~~~a 261 (953)
+++.+|+.-.. -+ ...+.+.+.+++.|+++.....-.. .+......++...++|.||+.+.......+++.+
T Consensus 30 ~~~~vi~Np~sg~~-~~~~~i~~~l~~~g~~~~~~~t~~~------~~~~~~~~~~~~~~~d~vvv~GGDGTl~~v~~~l 102 (332)
T 2bon_A 30 PASLLILNGKSTDN-LPLREAIMLLREEGMTIHVRVTWEK------GDAARYVEEARKFGVATVIAGGGDGTINEVSTAL 102 (332)
T ss_dssp CCEEEEECSSSTTC-HHHHHHHHHHHTTTCCEEEEECCST------THHHHHHHHHHHHTCSEEEEEESHHHHHHHHHHH
T ss_pred ceEEEEECCCCCCC-chHHHHHHHHHHcCCcEEEEEecCc------chHHHHHHHHHhcCCCEEEEEccchHHHHHHHHH
Confidence 67888874222 22 4566788888889987665433222 2333444555456789998888877788888887
Q ss_pred HHc
Q 002211 262 QRL 264 (953)
Q Consensus 262 ~~~ 264 (953)
.+.
T Consensus 103 ~~~ 105 (332)
T 2bon_A 103 IQC 105 (332)
T ss_dssp HHC
T ss_pred hhc
Confidence 753
No 419
>3kn3_A Putative periplasmic protein; alpha-beta structure, periplasmic binding protein fold, STRU genomics, PSI-2, protein structure initiative; HET: GSH CIT; 2.41A {Wolinella succinogenes}
Probab=25.74 E-value=30 Score=34.47 Aligned_cols=74 Identities=8% Similarity=-0.091 Sum_probs=50.1
Q ss_pred EEeeHHHHHHHHHhCCCcccEEEeeCCCCCCCCChHHHHHHHHcCceeEEEecEEEecCcc---ceeeccccceecceEE
Q 002211 511 HGYCIDVFLAAVRLLPYAVPYKFIPYGDGHKNPTYSELINQITTGVFDAAVGDIAIVTNRT---KAVDFTQPYIESGLVV 587 (953)
Q Consensus 511 ~G~~~dll~~la~~l~~~~~~~~~~~~~~~~n~~~~~~i~~l~~g~~Di~~~~~~~t~~r~---~~vdft~p~~~~~~~~ 587 (953)
.|+.-+|...+.++.|.++.+.+. .-..++.++.+|.+|+.+..-....+.. ....-..+|....+++
T Consensus 18 s~ll~eL~~~Fek~~gv~V~~~~~---------gSg~ll~qi~~G~aDVfisa~~~~~~~l~~~G~~~~~~~~a~N~LVL 88 (242)
T 3kn3_A 18 TGLLDVLAPAYKKDTGVDLKWVAV---------GTGNALKLGENCDVDVVFVHAPKVELEYVEKGFGIDRTPVMYNDFVI 88 (242)
T ss_dssp HTHHHHHHHHHHHHHSCEEEEEEE---------CHHHHHHHHHTTCCSEEEECCHHHHHHHHHHTSEEEEEEEECSCEEE
T ss_pred chHHHHHHHHHHHHhCCeEEEEEc---------CcHHHHHHHhcCCCCEEEecChHhHHHHHhcCCCccceEEEcceEEE
Confidence 356677888888888877666553 3668999999999998765332211110 0111236788899999
Q ss_pred EEeccc
Q 002211 588 VAPVRK 593 (953)
Q Consensus 588 ~v~~~~ 593 (953)
++|+..
T Consensus 89 V~P~~~ 94 (242)
T 3kn3_A 89 IGNPSF 94 (242)
T ss_dssp EECTHH
T ss_pred EEeCCC
Confidence 999865
No 420
>3hhg_A Transcriptional regulator, LYSR family; transcription factor, structur genomics, oxford protein production facility, OPPF; 3.20A {Neisseria meningitidis serogroup B}
Probab=25.70 E-value=41 Score=34.29 Aligned_cols=81 Identities=11% Similarity=0.055 Sum_probs=49.3
Q ss_pred CcceEEEecCcccccccEEeeCCcceEEEeeHHHHHHHHHhCCCcccEEEeeCCCCCCCCChHHHHHHHHcCceeEEEec
Q 002211 484 GRQLRIGVPNRVSYRDFVFKVNGTDIVHGYCIDVFLAAVRLLPYAVPYKFIPYGDGHKNPTYSELINQITTGVFDAAVGD 563 (953)
Q Consensus 484 g~~lri~v~~~~~~~p~~~~~~~~~~~~G~~~dll~~la~~l~~~~~~~~~~~~~~~~n~~~~~~i~~l~~g~~Di~~~~ 563 (953)
.++|+||+.. .+. ..+...++..+.++.+ .+++.... ++.+..+.+|++|+++..
T Consensus 92 ~g~l~I~~~~--~~~------------~~~l~~~l~~f~~~~P-~v~i~l~~----------~~~~~~l~~~~~Dl~i~~ 146 (306)
T 3hhg_A 92 QGVLSVDSAM--PMV------------LHLLAPLAAKFNERYP-HIRLSLVS----------SEGYINLIERKVDIALRA 146 (306)
T ss_dssp CEEEEEEBCH--HHH------------HHTHHHHHHHHHHHCT-TEEEEEEC----------CSSSHHHHTTSSSCEEES
T ss_pred CCcEEEEccH--HHH------------HHHHHHHHHHHHHHCC-CeEEEEEe----------ccchhhHhhcCccEEEEe
Confidence 3578998864 111 2456678888888875 24555542 123456889999999864
Q ss_pred EEEecCccceeeccccceecceEEEEeccc
Q 002211 564 IAIVTNRTKAVDFTQPYIESGLVVVAPVRK 593 (953)
Q Consensus 564 ~~~t~~r~~~vdft~p~~~~~~~~~v~~~~ 593 (953)
.... ...+. ..++....++++++...
T Consensus 147 ~~~~---~~~l~-~~~L~~~~~~~v~~~~~ 172 (306)
T 3hhg_A 147 GELD---DSGLR-ARHLFDSRFRVIASPEY 172 (306)
T ss_dssp CCCC---CSSCE-EEEEEEEEEEEEECHHH
T ss_pred CCCC---CCCeE-EEEeeeeEEEEEECHHH
Confidence 3222 12222 45677778888876543
No 421
>3bbl_A Regulatory protein of LACI family; protein structure initiative II, PSI-II, NYSGXRC, transcript regulator, periplasmic binding protein; 2.35A {Chloroflexus aggregans}
Probab=25.61 E-value=91 Score=31.45 Aligned_cols=78 Identities=3% Similarity=-0.135 Sum_probs=51.2
Q ss_pred cEEEEEEe------cCccccchHHHHHHHHHhcCcEEEEEEecCCCCCCChHHHHHHHHHHhcCCceEEEEEcchhhHHH
Q 002211 183 GEVIAIFN------DDDQGRNGVTALGDKLAEIRCKISYKSALPPDQSVTETDVRNELVKVRMMEARVIVVHGYSRTGLM 256 (953)
Q Consensus 183 ~~vaii~~------d~~~g~~~~~~l~~~l~~~g~~v~~~~~~~~~~~~~~~d~~~~l~~i~~~~~~vii~~~~~~~~~~ 256 (953)
+.|+++.. +++|.......+.+++++.|..+.... .. .+...-...++.+.+.+.|.||+....... .
T Consensus 5 ~~Ig~i~~~~~~~~~~~~~~~~~~gi~~~a~~~g~~~~~~~---~~--~~~~~~~~~~~~l~~~~vdgiIi~~~~~~~-~ 78 (287)
T 3bbl_A 5 FMIGYSWTQTEPGQVNHILDQFLSSMVREAGAVNYFVLPFP---FS--EDRSQIDIYRDLIRSGNVDGFVLSSINYND-P 78 (287)
T ss_dssp CEEEECCCCCCTTCSCCTHHHHHHHHHHHHHHTTCEEEECC---CC--SSTTCCHHHHHHHHTTCCSEEEECSCCTTC-H
T ss_pred eEEEEEecccccccCChhHHHHHHHHHHHHHHcCCEEEEEe---CC--CchHHHHHHHHHHHcCCCCEEEEeecCCCc-H
Confidence 46777764 346777888999999999999876532 11 112223456777888899999987643222 4
Q ss_pred HHHHHHHcCC
Q 002211 257 VFDVAQRLGM 266 (953)
Q Consensus 257 ~~~~a~~~g~ 266 (953)
.++.+.+.|.
T Consensus 79 ~~~~l~~~~i 88 (287)
T 3bbl_A 79 RVQFLLKQKF 88 (287)
T ss_dssp HHHHHHHTTC
T ss_pred HHHHHHhcCC
Confidence 5666666664
No 422
>3eod_A Protein HNR; response regulator, phosphoprotein, two-component regulatory system, signaling protein; 1.75A {Escherichia coli K12}
Probab=25.54 E-value=2.2e+02 Score=24.00 Aligned_cols=68 Identities=10% Similarity=0.161 Sum_probs=43.2
Q ss_pred cEEEEEEecCccccchHHHHHHHHHhcCcEEEEEEecCCCCCCChHHHHHHHHHHhcCCceEEEEEcc--hhhHHHHHHH
Q 002211 183 GEVIAIFNDDDQGRNGVTALGDKLAEIRCKISYKSALPPDQSVTETDVRNELVKVRMMEARVIVVHGY--SRTGLMVFDV 260 (953)
Q Consensus 183 ~~vaii~~d~~~g~~~~~~l~~~l~~~g~~v~~~~~~~~~~~~~~~d~~~~l~~i~~~~~~vii~~~~--~~~~~~~~~~ 260 (953)
.+|.++ +|+. .....+.+.+++.|..+.. .. +....+..+++..+|+|++... ..++..++++
T Consensus 8 ~~iliv-dd~~---~~~~~l~~~L~~~g~~v~~---~~--------~~~~a~~~l~~~~~dlvi~d~~l~~~~g~~~~~~ 72 (130)
T 3eod_A 8 KQILIV-EDEQ---VFRSLLDSWFSSLGATTVL---AA--------DGVDALELLGGFTPDLMICDIAMPRMNGLKLLEH 72 (130)
T ss_dssp CEEEEE-CSCH---HHHHHHHHHHHHTTCEEEE---ES--------CHHHHHHHHTTCCCSEEEECCC-----CHHHHHH
T ss_pred CeEEEE-eCCH---HHHHHHHHHHHhCCceEEE---eC--------CHHHHHHHHhcCCCCEEEEecCCCCCCHHHHHHH
Confidence 455554 3332 3566777888888877653 11 2345667777788999999754 3456778888
Q ss_pred HHHcC
Q 002211 261 AQRLG 265 (953)
Q Consensus 261 a~~~g 265 (953)
.++.+
T Consensus 73 l~~~~ 77 (130)
T 3eod_A 73 IRNRG 77 (130)
T ss_dssp HHHTT
T ss_pred HHhcC
Confidence 88754
No 423
>3hv2_A Response regulator/HD domain protein; PSI-2, NYSGXRC, structural genomics, protein structure initiative; 1.50A {Pseudomonas fluorescens pf-5}
Probab=25.40 E-value=2.1e+02 Score=25.16 Aligned_cols=58 Identities=10% Similarity=0.124 Sum_probs=40.3
Q ss_pred chHHHHHHHHHhcCcEEEEEEecCCCCCCChHHHHHHHHHHhcCCceEEEEEcc--hhhHHHHHHHHHHcC
Q 002211 197 NGVTALGDKLAEIRCKISYKSALPPDQSVTETDVRNELVKVRMMEARVIVVHGY--SRTGLMVFDVAQRLG 265 (953)
Q Consensus 197 ~~~~~l~~~l~~~g~~v~~~~~~~~~~~~~~~d~~~~l~~i~~~~~~vii~~~~--~~~~~~~~~~a~~~g 265 (953)
.....+.+.+++.|..|... .+....+..++...+|+|++... ..++..+++++++..
T Consensus 25 ~~~~~l~~~L~~~g~~v~~~-----------~~~~~a~~~l~~~~~dlvi~D~~l~~~~g~~~~~~l~~~~ 84 (153)
T 3hv2_A 25 VILQRLQQLLSPLPYTLHFA-----------RDATQALQLLASREVDLVISAAHLPQMDGPTLLARIHQQY 84 (153)
T ss_dssp HHHHHHHHHHTTSSCEEEEE-----------SSHHHHHHHHHHSCCSEEEEESCCSSSCHHHHHHHHHHHC
T ss_pred HHHHHHHHHhcccCcEEEEE-----------CCHHHHHHHHHcCCCCEEEEeCCCCcCcHHHHHHHHHhHC
Confidence 45677888888888766531 12344566667788999999754 346778888888754
No 424
>2rjn_A Response regulator receiver:metal-dependent phosphohydrolase, HD subdomain; structural genomics, oceanospirillum SP. MED92; 2.10A {Neptuniibacter caesariensis}
Probab=25.26 E-value=2.6e+02 Score=24.51 Aligned_cols=58 Identities=10% Similarity=0.121 Sum_probs=40.4
Q ss_pred chHHHHHHHHHhcCcEEEEEEecCCCCCCChHHHHHHHHHHhcCCceEEEEEcch--hhHHHHHHHHHHcC
Q 002211 197 NGVTALGDKLAEIRCKISYKSALPPDQSVTETDVRNELVKVRMMEARVIVVHGYS--RTGLMVFDVAQRLG 265 (953)
Q Consensus 197 ~~~~~l~~~l~~~g~~v~~~~~~~~~~~~~~~d~~~~l~~i~~~~~~vii~~~~~--~~~~~~~~~a~~~g 265 (953)
.....+...+++.|..|... .+....+..++...+|+|++.... .++..++++.++..
T Consensus 18 ~~~~~l~~~L~~~g~~v~~~-----------~~~~~a~~~l~~~~~dlvi~d~~l~~~~g~~~~~~l~~~~ 77 (154)
T 2rjn_A 18 PILNSLKRLIKRLGCNIITF-----------TSPLDALEALKGTSVQLVISDMRMPEMGGEVFLEQVAKSY 77 (154)
T ss_dssp HHHHHHHHHHHTTTCEEEEE-----------SCHHHHHHHHTTSCCSEEEEESSCSSSCHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHcCCeEEEe-----------CCHHHHHHHHhcCCCCEEEEecCCCCCCHHHHHHHHHHhC
Confidence 45677788888888876521 123456677777889999997553 46777888888754
No 425
>2i2x_B MTAC, methyltransferase 1; TIM barrel and helix bundle (MTAB), rossman fold and helix B (MTAC); HET: B13; 2.50A {Methanosarcina barkeri}
Probab=24.89 E-value=4.3e+02 Score=26.20 Aligned_cols=84 Identities=13% Similarity=0.042 Sum_probs=54.8
Q ss_pred cEEEEEEecCccccchHHHHHHHHHhcCcEEEEEE-ecCCCCCCChHHHHHHHHHHhcCCceEEEEEcch----hhHHHH
Q 002211 183 GEVIAIFNDDDQGRNGVTALGDKLAEIRCKISYKS-ALPPDQSVTETDVRNELVKVRMMEARVIVVHGYS----RTGLMV 257 (953)
Q Consensus 183 ~~vaii~~d~~~g~~~~~~l~~~l~~~g~~v~~~~-~~~~~~~~~~~d~~~~l~~i~~~~~~vii~~~~~----~~~~~~ 257 (953)
.+|.+.....+.-.-+...+...|+..|.+|.+-. ..|+ + ..+..+++.+||+|.+.+.. .....+
T Consensus 124 ~~vlla~~~gd~HdiG~~iva~~L~~~G~~Vi~LG~~vp~------e---~l~~~~~~~~~d~V~lS~l~~~~~~~~~~~ 194 (258)
T 2i2x_B 124 GTVVCHVAEGDVHDIGKNIVTALLRANGYNVVDLGRDVPA------E---EVLAAVQKEKPIMLTGTALMTTTMYAFKEV 194 (258)
T ss_dssp CEEEEEECTTCCCCHHHHHHHHHHHHTTCEEEEEEEECCS------H---HHHHHHHHHCCSEEEEECCCTTTTTHHHHH
T ss_pred CeEEEEeCCCCccHHHHHHHHHHHHHCCCEEEECCCCCCH------H---HHHHHHHHcCCCEEEEEeeccCCHHHHHHH
Confidence 46666665555444556777788899999986543 2332 2 34566666789999997642 457778
Q ss_pred HHHHHHcCCCCCceEEEEeC
Q 002211 258 FDVAQRLGMMDSGYVWIATT 277 (953)
Q Consensus 258 ~~~a~~~g~~~~~~~wi~~~ 277 (953)
++++++.|.. -.+++++.
T Consensus 195 i~~l~~~~~~--~~v~vGG~ 212 (258)
T 2i2x_B 195 NDMLLENGIK--IPFACGGG 212 (258)
T ss_dssp HHHHHTTTCC--CCEEEEST
T ss_pred HHHHHhcCCC--CcEEEECc
Confidence 8888887754 23455543
No 426
>3nhm_A Response regulator; protein structure initiative II(PSI II), NYSGXRC, structural genomics; 2.19A {Myxococcus xanthus}
Probab=24.47 E-value=2.4e+02 Score=23.78 Aligned_cols=69 Identities=10% Similarity=-0.034 Sum_probs=42.6
Q ss_pred chHHHHHHHHHhcCcEEEEEEecCCCCCCChHHHHHHHHHHhcCCceEEEEEcc--hhhHHHHHHHHHHcCCCCCceEEE
Q 002211 197 NGVTALGDKLAEIRCKISYKSALPPDQSVTETDVRNELVKVRMMEARVIVVHGY--SRTGLMVFDVAQRLGMMDSGYVWI 274 (953)
Q Consensus 197 ~~~~~l~~~l~~~g~~v~~~~~~~~~~~~~~~d~~~~l~~i~~~~~~vii~~~~--~~~~~~~~~~a~~~g~~~~~~~wi 274 (953)
.....+...++ .|..+... .+....+..+.+..+|+|++... ..++..+++++++......-.+.+
T Consensus 15 ~~~~~l~~~l~-~~~~v~~~-----------~~~~~a~~~l~~~~~dlvi~d~~l~~~~g~~~~~~l~~~~~~~~~pii~ 82 (133)
T 3nhm_A 15 TMRETLRLLLS-GEFDCTTA-----------ADGASGLQQALAHPPDVLISDVNMDGMDGYALCGHFRSEPTLKHIPVIF 82 (133)
T ss_dssp HHHHHHHHHHT-TTSEEEEE-----------SSHHHHHHHHHHSCCSEEEECSSCSSSCHHHHHHHHHHSTTTTTCCEEE
T ss_pred HHHHHHHHHHh-CCcEEEEE-----------CCHHHHHHHHhcCCCCEEEEeCCCCCCCHHHHHHHHHhCCccCCCCEEE
Confidence 34556666676 67665421 12345566677788999999754 456788899998864322223444
Q ss_pred EeC
Q 002211 275 ATT 277 (953)
Q Consensus 275 ~~~ 277 (953)
.++
T Consensus 83 ~s~ 85 (133)
T 3nhm_A 83 VSG 85 (133)
T ss_dssp EES
T ss_pred EeC
Confidence 444
No 427
>4es6_A Uroporphyrinogen-III synthase; heme-biosynthesis, cytoplasmi; 2.22A {Pseudomonas aeruginosa}
Probab=24.28 E-value=47 Score=33.24 Aligned_cols=86 Identities=13% Similarity=0.148 Sum_probs=50.9
Q ss_pred HHHHHHHHHH-----HcCCcEEEEEEecCccccchHHHHHHHHHhcCcEEEEEEecCCCCC-CChHHHHHHHHHHhcCCc
Q 002211 169 LMSAIAEMVS-----YFGWGEVIAIFNDDDQGRNGVTALGDKLAEIRCKISYKSALPPDQS-VTETDVRNELVKVRMMEA 242 (953)
Q Consensus 169 ~~~ai~~~l~-----~~~w~~vaii~~d~~~g~~~~~~l~~~l~~~g~~v~~~~~~~~~~~-~~~~d~~~~l~~i~~~~~ 242 (953)
.++.+++.+. ...-++|.++..+ ...+.+.+.|++.|..|.....|..... ....++ ...+...+.
T Consensus 115 ~~e~L~~~l~~~~~~~~~~~~vL~~rg~-----~~r~~L~~~L~~~G~~v~~~~vY~~~~~~~~~~~~---~~~l~~~~~ 186 (254)
T 4es6_A 115 DSEALLALPAFQDSLRVHDPKVLIMRGE-----GGREFLAERLRGQGVQVDYLPLYRRRAPDYPAGEL---LARVRAERL 186 (254)
T ss_dssp SHHHHHTCHHHHHHTCSSSCEEEEEECS-----SCCCHHHHHHHHTTCEEEEEECEEEECCCCCTTHH---HHHHHHTTC
T ss_pred CHHHHHHhHhhcccccCCCCEEEEEcCC-----ccHHHHHHHHHHCCCEEEEEeEEEeeCCCCCHHHH---HHHHHhCCC
Confidence 3567777764 3445788776643 3345678889999998765554432100 112233 334455667
Q ss_pred eEEEEEcchhhHHHHHHHHHH
Q 002211 243 RVIVVHGYSRTGLMVFDVAQR 263 (953)
Q Consensus 243 ~vii~~~~~~~~~~~~~~a~~ 263 (953)
|+|+ +.++..+..+++.+.+
T Consensus 187 d~v~-ftS~s~v~~~~~~~~~ 206 (254)
T 4es6_A 187 NGLV-VSSGQGLQNLYQLAAA 206 (254)
T ss_dssp CEEE-CCSHHHHHHHHHHHGG
T ss_pred CEEE-EcCHHHHHHHHHHhhH
Confidence 7765 5667777777776643
No 428
>3fst_A 5,10-methylenetetrahydrofolate reductase; TIM barrel, flavin, amino-acid biosynthesis, FAD, flavoprotein, methionine biosynthesis, NAD; HET: FAD MRY; 1.65A {Escherichia coli k-12} PDB: 3fsu_A* 1zp3_A* 1zpt_A* 1zrq_A* 1zp4_A* 2fmn_A* 2fmo_A* 1b5t_A*
Probab=24.19 E-value=5.9e+02 Score=26.00 Aligned_cols=164 Identities=16% Similarity=0.066 Sum_probs=88.3
Q ss_pred cEEEEEEecCCCC-hHHHH-HHHHHHHhcCcEEEE---ccCCh--hhHHHHH-HhhhhCCCcEEEe-ecCCCCCCCCCCC
Q 002211 87 RKLSITMHDAKFN-GFLSI-MGALQFMETDTLAIV---GPQSA--VMAHVLS-HLANELQVPLLSF-TALDPTLSPLQYP 157 (953)
Q Consensus 87 ~~l~l~~~D~~~~-~~~a~-~~a~~li~~~v~aii---Gp~~S--~~a~av~-~v~~~~~vP~Is~-~at~~~ls~~~~p 157 (953)
..+.+.+.=.+.. ....+ +.+.+|..-++.+|- |+..| ..+..++ .+.++.+++.+.. ++.+
T Consensus 23 ~~~S~E~fPPk~~~~~~~l~~~~~~l~~l~p~fvsVT~gagg~~r~~t~~~a~~i~~~~g~~~v~Hltc~~--------- 93 (304)
T 3fst_A 23 INVSFEFFPPRTSEMEQTLWNSIDRLSSLKPKFVSVTYGANSGERDRTHSIIKGIKDRTGLEAAPHLTCID--------- 93 (304)
T ss_dssp CEEEEEECCCCSHHHHHHHHHHHHHHHTTCCSEEEECCCTTSSCHHHHHHHHHHHHHHHCCCEEEEEESTT---------
T ss_pred eEEEEEEcCCCCccHHHHHHHHHHHHhcCCCCEEEEeeCCCCcchhHHHHHHHHHHHHhCCCeeEEeecCC---------
Confidence 3566666655542 22222 233444433554432 44443 3334444 5666788877653 2221
Q ss_pred cEEEccCChHHHHHHHHHHHHHcCCcEEEEEEecCcc----ccchHHHHHHHHHh-cCcEEEEEEecCCCCCCChH----
Q 002211 158 FFVQTAPNDLYLMSAIAEMVSYFGWGEVIAIFNDDDQ----GRNGVTALGDKLAE-IRCKISYKSALPPDQSVTET---- 228 (953)
Q Consensus 158 ~~fr~~p~d~~~~~ai~~~l~~~~w~~vaii~~d~~~----g~~~~~~l~~~l~~-~g~~v~~~~~~~~~~~~~~~---- 228 (953)
.+....+....-+...|.+.|-++..|-.- +-.....+.+.+++ .+.+|. ...||.+. ....
T Consensus 94 -------~~~~~l~~~L~~~~~~GI~nILaLrGDpp~~~~~~~~~A~dLv~~ir~~~~f~Ig-vA~yPE~H-p~a~~~~~ 164 (304)
T 3fst_A 94 -------ATPDELRTIARDYWNNGIRHIVALRGDLPPGSGKPEMYASDLVTLLKEVADFDIS-VAAYPEVH-PEAKSAQA 164 (304)
T ss_dssp -------SCHHHHHHHHHHHHHTTCCEEEEECCCCC------CCCHHHHHHHHHHHCCCEEE-EEECTTCC-TTCSCHHH
T ss_pred -------CCHHHHHHHHHHHHHCCCCEEEEecCCCCCCCCCCCCCHHHHHHHHHHcCCCeEE-EEeCCCcC-CCCCCHHH
Confidence 233444555555678999999999755321 12224445555544 355653 34565431 1122
Q ss_pred HHHHHHHHHhcCCceEEEEE--cchhhHHHHHHHHHHcCCCCC
Q 002211 229 DVRNELVKVRMMEARVIVVH--GYSRTGLMVFDVAQRLGMMDS 269 (953)
Q Consensus 229 d~~~~l~~i~~~~~~vii~~--~~~~~~~~~~~~a~~~g~~~~ 269 (953)
|+....+|+. .++|.+|.- .+.+....+++.+++.|...+
T Consensus 165 d~~~Lk~Kvd-AGAdf~iTQ~ffD~~~~~~f~~~~r~~Gi~vP 206 (304)
T 3fst_A 165 DLLNLKRKVD-AGANRAITQFFFDVESYLRFRDRCVSAGIDVE 206 (304)
T ss_dssp HHHHHHHHHH-HTCCEEEECCCSCHHHHHHHHHHHHHTTCCSC
T ss_pred HHHHHHHHHH-cCCCEEEeCccCCHHHHHHHHHHHHhcCCCCc
Confidence 4444444443 689998874 445677889999999887544
No 429
>2qr3_A Two-component system response regulator; structural genomics, signal receiver, PSI-2, protein structu initiative; 1.80A {Bacteroides fragilis}
Probab=24.05 E-value=3.3e+02 Score=23.06 Aligned_cols=58 Identities=16% Similarity=0.040 Sum_probs=39.4
Q ss_pred chHHHHHHHHHhcCcEEEEEEecCCCCCCChHHHHHHHHHHhcCCceEEEEEcch-------hhHHHHHHHHHHcC
Q 002211 197 NGVTALGDKLAEIRCKISYKSALPPDQSVTETDVRNELVKVRMMEARVIVVHGYS-------RTGLMVFDVAQRLG 265 (953)
Q Consensus 197 ~~~~~l~~~l~~~g~~v~~~~~~~~~~~~~~~d~~~~l~~i~~~~~~vii~~~~~-------~~~~~~~~~a~~~g 265 (953)
.....+.+.+++.|..|... . +....+..++...+|+|++.... .++..+++++++..
T Consensus 14 ~~~~~l~~~L~~~g~~v~~~---~--------~~~~a~~~l~~~~~dlvi~d~~~~~~~~~~~~g~~~~~~l~~~~ 78 (140)
T 2qr3_A 14 GVLTAVQLLLKNHFSKVITL---S--------SPVSLSTVLREENPEVVLLDMNFTSGINNGNEGLFWLHEIKRQY 78 (140)
T ss_dssp HHHHHHHHHHTTTSSEEEEE---C--------CHHHHHHHHHHSCEEEEEEETTTTC-----CCHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHhCCcEEEEe---C--------CHHHHHHHHHcCCCCEEEEeCCcCCCCCCCccHHHHHHHHHhhC
Confidence 45677888888888876531 1 22345566666789999998653 36777888888753
No 430
>1vc4_A Indole-3-glycerol phosphate synthase; lyase, tryptophan biosynthesis, riken structural genomics/PR initiative, RSGI, structural genomics; 1.80A {Thermus thermophilus} SCOP: c.1.2.4
Probab=23.97 E-value=2.5e+02 Score=27.95 Aligned_cols=87 Identities=15% Similarity=0.052 Sum_probs=59.8
Q ss_pred HHHHHHHHHcCCcEEEEEEecCccccchHHHHHHHHHhcCcEEEEEEecCCCCCCChHHHHHHHHHHhcCCceEEEEEcc
Q 002211 171 SAIAEMVSYFGWGEVIAIFNDDDQGRNGVTALGDKLAEIRCKISYKSALPPDQSVTETDVRNELVKVRMMEARVIVVHGY 250 (953)
Q Consensus 171 ~ai~~~l~~~~w~~vaii~~d~~~g~~~~~~l~~~l~~~g~~v~~~~~~~~~~~~~~~d~~~~l~~i~~~~~~vii~~~~ 250 (953)
..+++.....|...+.++. ++.|..+..+.+...-+..++.|.....+ .+ ++ ++...+..++|.|++...
T Consensus 68 ~~~A~~~~~~GA~~isvlt-~~~~f~G~~~~l~~i~~~v~lPvl~kdfI-~d------~~--qi~~a~~~GAD~VlL~~~ 137 (254)
T 1vc4_A 68 VEAALAYARGGARAVSVLT-EPHRFGGSLLDLKRVREAVDLPLLRKDFV-VD------PF--MLEEARAFGASAALLIVA 137 (254)
T ss_dssp HHHHHHHHHTTCSEEEEEC-CCSSSCCCHHHHHHHHHHCCSCEEEESCC-CS------HH--HHHHHHHTTCSEEEEEHH
T ss_pred HHHHHHHHHcCCCEEEEec-chhhhccCHHHHHHHHHhcCCCEEECCcC-CC------HH--HHHHHHHcCCCEEEECcc
Confidence 4567777788999998876 44555556666666666667776543322 22 22 466678899999999754
Q ss_pred h--hhHHHHHHHHHHcCCC
Q 002211 251 S--RTGLMVFDVAQRLGMM 267 (953)
Q Consensus 251 ~--~~~~~~~~~a~~~g~~ 267 (953)
. .....++..+++.||.
T Consensus 138 ~l~~~l~~l~~~a~~lGl~ 156 (254)
T 1vc4_A 138 LLGELTGAYLEEARRLGLE 156 (254)
T ss_dssp HHGGGHHHHHHHHHHHTCE
T ss_pred chHHHHHHHHHHHHHCCCe
Confidence 2 6778888888898874
No 431
>3tpf_A Otcase, ornithine carbamoyltransferase; structural genomics, center for structural genomics of infec diseases, csgid, rossman fold; 2.70A {Campylobacter jejuni subsp}
Probab=23.96 E-value=5.9e+02 Score=26.00 Aligned_cols=132 Identities=16% Similarity=0.208 Sum_probs=79.8
Q ss_pred EEEeEEEecCCCchhHHHHHHHHHHHHHhcCCCCCCCcEEEEEEecCCCChHHHHHHHHHHHhc--CcEEEEccCChhhH
Q 002211 50 LNVGAIFSFGTVNGQVSRIAMKAAQDDINSDPRVLGGRKLSITMHDAKFNGFLSIMGALQFMET--DTLAIVGPQSAVMA 127 (953)
Q Consensus 50 i~IG~l~~~~~~~g~~~~~a~~lAve~iN~~g~il~g~~l~l~~~D~~~~~~~a~~~a~~li~~--~v~aiiGp~~S~~a 127 (953)
-.|+.+|--.+ ...+.+++.|+.++ +|..+.+...|++-.-.+.+.-+.+-++. .++++=.+. .
T Consensus 37 k~la~lF~e~S---TRTR~SFe~A~~~L-------Gg~~i~l~~~~ss~~kgEsl~DTarvls~~~D~iviR~~~----~ 102 (307)
T 3tpf_A 37 KTLAMIFEKNS---TRTRMAFELAITEL-------GGKALFLSSNDLQLSRGEPVKDTARVIGAMVDFVMMRVNK----H 102 (307)
T ss_dssp CEEEEEESSCC---HHHHHHHHHHHHHT-------TCEEEEECTTTCCTTTSSCHHHHHHHHHHHSSEEEEECSC----H
T ss_pred CEEEEEecCCC---cchHHhHHHHHHHc-------CCeEEEcCcccccCCCCCCHHHHHHHHHHhCCEEEEecCC----h
Confidence 34788887655 36789999999986 45555554444332222333333344444 455454553 2
Q ss_pred HHHHHhhhhCCCcEEEeecCCCCCCCCCCCcEEEccCChHHHHHHHHHHH---HHcC-C---cEEEEEEecCccccchHH
Q 002211 128 HVLSHLANELQVPLLSFTALDPTLSPLQYPFFVQTAPNDLYLMSAIAEMV---SYFG-W---GEVIAIFNDDDQGRNGVT 200 (953)
Q Consensus 128 ~av~~v~~~~~vP~Is~~at~~~ls~~~~p~~fr~~p~d~~~~~ai~~~l---~~~~-w---~~vaii~~d~~~g~~~~~ 200 (953)
.++..+++..+||+|.-+. +...| .+++++++ +++| + .+|+++.+ +.....
T Consensus 103 ~~~~~lA~~~~vPVINag~------~~~HP------------tQaLaDl~Ti~e~~g~l~~gl~va~vGD----~~~va~ 160 (307)
T 3tpf_A 103 ETLLEFARYSKAPVINALS------ELYHP------------TQVLGDLFTIKEWNKMQNGIAKVAFIGD----SNNMCN 160 (307)
T ss_dssp HHHHHHHHHCSSCEEEEEC------SSCCH------------HHHHHHHHHHHHTTCCGGGCCEEEEESC----SSHHHH
T ss_pred HHHHHHHHhCCCCEEeCCC------CCcCc------------HHHHHHHHHHHHHhCCCCCCCEEEEEcC----CCccHH
Confidence 3455677788999997532 12223 35677763 4454 3 46776652 356888
Q ss_pred HHHHHHHhcCcEEEEEE
Q 002211 201 ALGDKLAEIRCKISYKS 217 (953)
Q Consensus 201 ~l~~~l~~~g~~v~~~~ 217 (953)
.+...+...|.+|....
T Consensus 161 Sl~~~~~~~G~~v~~~~ 177 (307)
T 3tpf_A 161 SWLITAAILGFEISIAM 177 (307)
T ss_dssp HHHHHHHHHTCEEEEEC
T ss_pred HHHHHHHHcCCEEEEEC
Confidence 89999999998876643
No 432
>3umf_A Adenylate kinase; rossmann fold, transferase; 2.05A {Schistosoma mansoni}
Probab=23.89 E-value=29 Score=33.94 Aligned_cols=31 Identities=13% Similarity=0.168 Sum_probs=28.4
Q ss_pred CcEEEEccCChhhHHHHHHhhhhCCCcEEEe
Q 002211 114 DTLAIVGPQSAVMAHVLSHLANELQVPLLSF 144 (953)
Q Consensus 114 ~v~aiiGp~~S~~a~av~~v~~~~~vP~Is~ 144 (953)
+++.|+||..|+=......+++.+++|+||.
T Consensus 30 kiI~llGpPGsGKgTqa~~L~~~~g~~hIst 60 (217)
T 3umf_A 30 KVIFVLGGPGSGKGTQCEKLVQKFHFNHLSS 60 (217)
T ss_dssp EEEEEECCTTCCHHHHHHHHHHHHCCEEECH
T ss_pred cEEEEECCCCCCHHHHHHHHHHHHCCceEcH
Confidence 7889999999999888889999999999974
No 433
>3sr0_A Adenylate kinase; phosphoryl transfer analogue, ALF4, transferase (phosphotran phosphoryl transfer, nucleotide-binding; HET: ADP AMP; 1.56A {Aquifex aeolicus} PDB: 2rh5_A 2rgx_A*
Probab=23.83 E-value=38 Score=32.82 Aligned_cols=30 Identities=27% Similarity=0.263 Sum_probs=26.9
Q ss_pred cEEEEccCChhhHHHHHHhhhhCCCcEEEe
Q 002211 115 TLAIVGPQSAVMAHVLSHLANELQVPLLSF 144 (953)
Q Consensus 115 v~aiiGp~~S~~a~av~~v~~~~~vP~Is~ 144 (953)
+..++||..|+=......+++.+++|+||.
T Consensus 2 ~Iil~GpPGsGKgTqa~~La~~~g~~~ist 31 (206)
T 3sr0_A 2 ILVFLGPPGAGKGTQAKRLAKEKGFVHIST 31 (206)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHCCEEEEH
T ss_pred EEEEECCCCCCHHHHHHHHHHHHCCeEEcH
Confidence 467899999999888899999999999985
No 434
>2qv7_A Diacylglycerol kinase DGKB; alpha-beta domain 1, beta sandwich domain 2, protein-ADP COM transferase; HET: ADP; 2.30A {Staphylococcus aureus} SCOP: e.52.1.2 PDB: 2qvl_A
Probab=23.66 E-value=2.7e+02 Score=28.98 Aligned_cols=75 Identities=16% Similarity=0.051 Sum_probs=49.5
Q ss_pred CcEEEEEEecCcccc----chHHHHHHHHHhcCcEEEEEEecCCCCCCChHHHHHHHHHHhcCCceEEEEEcchhhHHHH
Q 002211 182 WGEVIAIFNDDDQGR----NGVTALGDKLAEIRCKISYKSALPPDQSVTETDVRNELVKVRMMEARVIVVHGYSRTGLMV 257 (953)
Q Consensus 182 w~~vaii~~d~~~g~----~~~~~l~~~l~~~g~~v~~~~~~~~~~~~~~~d~~~~l~~i~~~~~~vii~~~~~~~~~~~ 257 (953)
.+++.+|+.-. -|. ...+.+.+.+++.|+++.....-. ..+......++...++|+||+.+.......+
T Consensus 24 m~~i~vI~NP~-sg~~~~~~~~~~i~~~L~~~g~~~~~~~t~~------~~~a~~~~~~~~~~~~d~vvv~GGDGTv~~v 96 (337)
T 2qv7_A 24 RKRARIIYNPT-SGKEQFKRELPDALIKLEKAGYETSAYATEK------IGDATLEAERAMHENYDVLIAAGGDGTLNEV 96 (337)
T ss_dssp CEEEEEEECTT-STTSCHHHHHHHHHHHHHHTTEEEEEEECCS------TTHHHHHHHHHTTTTCSEEEEEECHHHHHHH
T ss_pred cceEEEEECCC-CCCCchHHHHHHHHHHHHHcCCeEEEEEecC------cchHHHHHHHHhhcCCCEEEEEcCchHHHHH
Confidence 47888888432 232 346788888999998766543222 2244455566666788999988887777777
Q ss_pred HHHHHH
Q 002211 258 FDVAQR 263 (953)
Q Consensus 258 ~~~a~~ 263 (953)
++.+.+
T Consensus 97 ~~~l~~ 102 (337)
T 2qv7_A 97 VNGIAE 102 (337)
T ss_dssp HHHHTT
T ss_pred HHHHHh
Confidence 777743
No 435
>4f2g_A Otcase 1, ornithine carbamoyltransferase 1; structural genomics, niaid, national institute of allergy AN infectious diseases; 2.10A {Burkholderia thailandensis}
Probab=23.54 E-value=6.1e+02 Score=25.96 Aligned_cols=132 Identities=14% Similarity=0.206 Sum_probs=79.5
Q ss_pred EEEeEEEecCCCchhHHHHHHHHHHHHHhcCCCCCCCcEEEEEEecCCCChHHHHHHHHHHHhc--CcEEEEccCChhhH
Q 002211 50 LNVGAIFSFGTVNGQVSRIAMKAAQDDINSDPRVLGGRKLSITMHDAKFNGFLSIMGALQFMET--DTLAIVGPQSAVMA 127 (953)
Q Consensus 50 i~IG~l~~~~~~~g~~~~~a~~lAve~iN~~g~il~g~~l~l~~~D~~~~~~~a~~~a~~li~~--~v~aiiGp~~S~~a 127 (953)
-.|+.+|--.+. ..+.+++.|+.++ +|..+.+...|++-.-.+.+.-+.+-++. .++++=.+..
T Consensus 46 k~la~lF~e~ST---RTR~SFE~A~~~L-------Gg~~i~l~~~~ss~~kgEsl~DTarvls~~~D~iviR~~~~---- 111 (309)
T 4f2g_A 46 RTLAMIFEKSST---RTRLSFEAGIFQL-------GGHAVFMSTRDTQLGRGEPVEDSAQVISRMVDIIMIRTFEQ---- 111 (309)
T ss_dssp CEEEEEESSCCH---HHHHHHHHHHHHT-------TCEEEEECCSSCEETBEECHHHHHHHHHHHCSEEEEECSCH----
T ss_pred ceEEEEecCCCh---hhHhhHHHHHHHc-------CCeEEEcCcccccCCCCCCHHHHHHHHHHhCCEEEEecCCH----
Confidence 358888876653 6789999999986 35555554333332212223333333343 4444446542
Q ss_pred HHHHHhhhhCCCcEEEeecCCCCCCCCCCCcEEEccCChHHHHHHHHHHH---HHcC---CcEEEEEEecCccccchHHH
Q 002211 128 HVLSHLANELQVPLLSFTALDPTLSPLQYPFFVQTAPNDLYLMSAIAEMV---SYFG---WGEVIAIFNDDDQGRNGVTA 201 (953)
Q Consensus 128 ~av~~v~~~~~vP~Is~~at~~~ls~~~~p~~fr~~p~d~~~~~ai~~~l---~~~~---w~~vaii~~d~~~g~~~~~~ 201 (953)
.++..+++..+||+|.-+ ++ ...| .+++++++ +++| ..+|+++.+ +......
T Consensus 112 ~~~~~lA~~~~vPVINag-~~-----~~HP------------tQaLaDl~Ti~e~~g~l~glkva~vGD----~~~va~S 169 (309)
T 4f2g_A 112 DIIQRFAENSRVPVINGL-TN-----EYHP------------CQVLADIFTYYEHRGPIRGKTVAWVGD----ANNMLYT 169 (309)
T ss_dssp HHHHHHHHTCSSCEEEEE-CS-----SCCH------------HHHHHHHHHHHHHHSCCTTCEEEEESC----CCHHHHH
T ss_pred HHHHHHHHhCCCCEEECC-CC-----ccCc------------HHHHHHHHHHHHHhCCCCCCEEEEECC----CcchHHH
Confidence 345567778899999854 22 2223 35566663 4444 467777763 2568888
Q ss_pred HHHHHHhcCcEEEEEE
Q 002211 202 LGDKLAEIRCKISYKS 217 (953)
Q Consensus 202 l~~~l~~~g~~v~~~~ 217 (953)
+...+...|.+|....
T Consensus 170 l~~~~~~~G~~v~~~~ 185 (309)
T 4f2g_A 170 WIQAARILDFKLQLST 185 (309)
T ss_dssp HHHHHHHHTCEEEEEC
T ss_pred HHHHHHHcCCEEEEEC
Confidence 8889999998876643
No 436
>3cnb_A DNA-binding response regulator, MERR family; signal receiver domain, DNA binding protein, protein structu initiative, PSI-2; 2.00A {Colwellia psychrerythraea}
Probab=23.52 E-value=3.4e+02 Score=23.03 Aligned_cols=58 Identities=7% Similarity=-0.039 Sum_probs=38.3
Q ss_pred chHHHHHHHHHh-cCcEEEEEEecCCCCCCChHHHHHHHHHHhcCCceEEEEEcch--hhHHHHHHHHHHc
Q 002211 197 NGVTALGDKLAE-IRCKISYKSALPPDQSVTETDVRNELVKVRMMEARVIVVHGYS--RTGLMVFDVAQRL 264 (953)
Q Consensus 197 ~~~~~l~~~l~~-~g~~v~~~~~~~~~~~~~~~d~~~~l~~i~~~~~~vii~~~~~--~~~~~~~~~a~~~ 264 (953)
.....+.+.+++ .|..++.. . .+....+..+++..+|+|++.... .++..++++.++.
T Consensus 19 ~~~~~l~~~L~~~~~~~~v~~--~--------~~~~~a~~~l~~~~~dlii~d~~l~~~~g~~~~~~l~~~ 79 (143)
T 3cnb_A 19 EFADMLTQFLENLFPYAKIKI--A--------YNPFDAGDLLHTVKPDVVMLDLMMVGMDGFSICHRIKST 79 (143)
T ss_dssp HHHHHHHHHHHHHCTTCEEEE--E--------CSHHHHHHHHHHTCCSEEEEETTCTTSCHHHHHHHHHTS
T ss_pred HHHHHHHHHHHhccCccEEEE--E--------CCHHHHHHHHHhcCCCEEEEecccCCCcHHHHHHHHHhC
Confidence 456677778887 78773322 1 123345666666789999998653 4677888888874
No 437
>2rdm_A Response regulator receiver protein; structural genomics, unknown function, PSI-2, protein struct initiative; HET: MSE; 1.76A {Sinorhizobium medicae}
Probab=23.47 E-value=3.3e+02 Score=22.78 Aligned_cols=58 Identities=10% Similarity=0.044 Sum_probs=39.1
Q ss_pred chHHHHHHHHHhcCcEEEEEEecCCCCCCChHHHHHHHHHHhcC-CceEEEEEcch---hhHHHHHHHHHHcC
Q 002211 197 NGVTALGDKLAEIRCKISYKSALPPDQSVTETDVRNELVKVRMM-EARVIVVHGYS---RTGLMVFDVAQRLG 265 (953)
Q Consensus 197 ~~~~~l~~~l~~~g~~v~~~~~~~~~~~~~~~d~~~~l~~i~~~-~~~vii~~~~~---~~~~~~~~~a~~~g 265 (953)
.....+...+++.|..+.. .. +....+..+.+. .+|+|++.... .++..++++.++..
T Consensus 16 ~~~~~l~~~L~~~g~~v~~---~~--------~~~~a~~~l~~~~~~dlvi~d~~l~~~~~g~~~~~~l~~~~ 77 (132)
T 2rdm_A 16 ILLLDFESTLTDAGFLVTA---VS--------SGAKAIEMLKSGAAIDGVVTDIRFCQPPDGWQVARVAREID 77 (132)
T ss_dssp HHHHHHHHHHHHTTCEEEE---ES--------SHHHHHHHHHTTCCCCEEEEESCCSSSSCHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHcCCEEEE---EC--------CHHHHHHHHHcCCCCCEEEEeeeCCCCCCHHHHHHHHHhcC
Confidence 4566777788878887653 11 223455666666 79999997653 45778888888764
No 438
>4i1d_A ABC transporter substrate-binding protein; structural genomics, PSI-biology; 2.20A {Bradyrhizobium japonicum}
Probab=23.47 E-value=5.8e+02 Score=25.68 Aligned_cols=72 Identities=8% Similarity=-0.023 Sum_probs=43.9
Q ss_pred CCCHHHHHHHHHcCCcEEEEccchhHHHHHhcCcceEEeCCccccCccEEEecCCCcchHHHHHHHHhhhcc
Q 002211 741 LGSPEEYAIALENRTVAAVVDERPYIDLFLSDHCQFSVRGQEFTKSGWGFAFPRDSPLAIDMSTAILTLSEN 812 (953)
Q Consensus 741 ~~~~~~~~~~l~~g~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~k~spl~~~~n~~i~~l~e~ 812 (953)
..+..+..+.+.+|++++.+.-............++.++-+--.....+++++|+++-.+.--+.|..+...
T Consensus 184 ~~~~~~~~~~~~~Ge~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~i~k~s~~~~~A~~fi~fl~s~ 255 (324)
T 4i1d_A 184 WTSGAQSAQLLNDGEVDMEMAWNGRVSAVAKEGAKVSFTYNQGILQSTSLCILKGAPNLETAVKFLNEAVDP 255 (324)
T ss_dssp ECSHHHHHHHHHHTSCSEEEEEHHHHHHHHHTTCSEEEEEEEEEEEEEEEEEBTTCTTHHHHHHHHHHHTCH
T ss_pred ccCcchHHHHHhCCCEEEEecccHHHHHHHhcCCCeEEEecCeeeeccEEEEECCCCCHHHHHHHHHHHhCH
Confidence 356778888999999988776544443333333344433221112345788999999666666666666543
No 439
>4amu_A Ornithine carbamoyltransferase, catabolic; ornithine transcarbamoylase, hydrolase; 2.50A {Mycoplasma penetrans} PDB: 4anf_A
Probab=23.40 E-value=6.6e+02 Score=26.39 Aligned_cols=132 Identities=18% Similarity=0.134 Sum_probs=78.6
Q ss_pred EEEeEEEecCCCchhHHHHHHHHHHHHHhcCCCCCCCcEEEEEEecCCCChHHHHHHHHHHHhc--CcEEEEccCChhhH
Q 002211 50 LNVGAIFSFGTVNGQVSRIAMKAAQDDINSDPRVLGGRKLSITMHDAKFNGFLSIMGALQFMET--DTLAIVGPQSAVMA 127 (953)
Q Consensus 50 i~IG~l~~~~~~~g~~~~~a~~lAve~iN~~g~il~g~~l~l~~~D~~~~~~~a~~~a~~li~~--~v~aiiGp~~S~~a 127 (953)
-.|+.+|--.+. ..+.+++.|+.++ +|..+.+...+++-.-.+.+.-+.+-++. .++++=++..
T Consensus 72 K~va~lF~e~ST---RTR~SFE~A~~~L-------Gg~vi~l~~~~ss~~kgEsl~DTarvLs~~~D~IviR~~~~---- 137 (365)
T 4amu_A 72 KNIAILFQKDST---RTRCAFEVAASDL-------GAGVTYIGPSGSNMGKKESIEDTAKVLGRFYDGIEFRGFAQ---- 137 (365)
T ss_dssp CEEEEEESSCCH---HHHHHHHHHHHHH-------TCEEEEECHHHHCCSSSSCHHHHHHHHHHHCSEEEEECSCH----
T ss_pred ceEEEEecCCCc---hHHHHHHHHHHhC-------CCEEEEcCCccccCCCCcCHHHHHHHHHhhCcEEEEecCCh----
Confidence 468888877663 6789999999997 34555543334332222233333333333 4555556543
Q ss_pred HHHHHhhhhCCCcEEEeecCCCCCCCCCCCcEEEccCChHHHHHHHHHH---HHHcC---CcEEEEEEecCccccchHHH
Q 002211 128 HVLSHLANELQVPLLSFTALDPTLSPLQYPFFVQTAPNDLYLMSAIAEM---VSYFG---WGEVIAIFNDDDQGRNGVTA 201 (953)
Q Consensus 128 ~av~~v~~~~~vP~Is~~at~~~ls~~~~p~~fr~~p~d~~~~~ai~~~---l~~~~---w~~vaii~~d~~~g~~~~~~ 201 (953)
.++..+++..+||+|.-+ + +...| .++++++ .+++| ..+|+++. |.. .+....
T Consensus 138 ~~~~~lA~~s~vPVINa~-~-----~~~HP------------tQaLaDl~Ti~E~~G~l~glkva~vG-D~~--nnva~S 196 (365)
T 4amu_A 138 SDVDALVKYSGVPVWNGL-T-----DDEHP------------TQIIADFMTMKEKFGNLKNKKIVFIG-DYK--NNVGVS 196 (365)
T ss_dssp HHHHHHHHHHCSCEEEEE-C-----SSCCH------------HHHHHHHHHHHHHHSSCTTCEEEEES-STT--SHHHHH
T ss_pred hHHHHHHHhCCCCEEeCC-C-----CCCCc------------HHHHHHHHHHHHHhCCCCCCEEEEEC-CCC--cchHHH
Confidence 244556677789999854 2 22223 2556666 34555 46777665 221 257888
Q ss_pred HHHHHHhcCcEEEEE
Q 002211 202 LGDKLAEIRCKISYK 216 (953)
Q Consensus 202 l~~~l~~~g~~v~~~ 216 (953)
+...+...|.+|...
T Consensus 197 l~~~~~~lG~~v~~~ 211 (365)
T 4amu_A 197 TMIGAAFNGMHVVMC 211 (365)
T ss_dssp HHHHHHHTTCEEEEE
T ss_pred HHHHHHHcCCEEEEE
Confidence 888899999887654
No 440
>3hp4_A GDSL-esterase; psychrotrophic, monoethylphosphonate, hydrolase; HET: MIR; 1.35A {Pseudoalteromonas SP} SCOP: c.23.10.0
Probab=23.02 E-value=2.5e+02 Score=25.52 Aligned_cols=69 Identities=13% Similarity=0.119 Sum_probs=40.6
Q ss_pred cEEEEEEecCccc------cchHHHHHHHHHhcCcEEEEE-EecCCCCCCChHHHHHHHHHHhc-CCceEEEEEcchhhH
Q 002211 183 GEVIAIFNDDDQG------RNGVTALGDKLAEIRCKISYK-SALPPDQSVTETDVRNELVKVRM-MEARVIVVHGYSRTG 254 (953)
Q Consensus 183 ~~vaii~~d~~~g------~~~~~~l~~~l~~~g~~v~~~-~~~~~~~~~~~~d~~~~l~~i~~-~~~~vii~~~~~~~~ 254 (953)
++|.++.+.-..| .+....+.+.+.+.|..+... ..++ + .+..+....+.+... .+||+|++.....+.
T Consensus 3 ~~i~~~GDSit~G~g~~~~~~~~~~l~~~l~~~~~~~~v~n~g~~-G--~~~~~~~~~~~~~~~~~~pd~vvi~~G~ND~ 79 (185)
T 3hp4_A 3 NTILILGDXLSAAYGLQQEEGWVKLLQDKYDAEQSDIVLINASIS-G--ETSGGALRRLDALLEQYEPTHVLIELGANDG 79 (185)
T ss_dssp EEEEEEECTTTTTTTSCGGGSHHHHHHHHHHHTTCCEEEEECCCT-T--CCHHHHHHHHHHHHHHHCCSEEEEECCHHHH
T ss_pred CeEEEECCcccccCCCCCcccHHHHHHHHHHhcCCcEEEEECCcC-C--ccHHHHHHHHHHHHhhcCCCEEEEEeecccC
Confidence 5677777554444 355677788887775544332 2233 2 234555555555433 489999998766553
No 441
>1mb3_A Cell division response regulator DIVK; signal transduction protein, structural proteomics in europe, spine, structural genomics; 1.41A {Caulobacter vibrioides} SCOP: c.23.1.1 PDB: 1m5u_A 1mav_A 1mb0_A 1m5t_A
Probab=22.64 E-value=2.8e+02 Score=22.94 Aligned_cols=57 Identities=14% Similarity=0.028 Sum_probs=36.8
Q ss_pred chHHHHHHHHHhcCcEEEEEEecCCCCCCChHHHHHHHHHHhcCCceEEEEEcch--hhHHHHHHHHHHc
Q 002211 197 NGVTALGDKLAEIRCKISYKSALPPDQSVTETDVRNELVKVRMMEARVIVVHGYS--RTGLMVFDVAQRL 264 (953)
Q Consensus 197 ~~~~~l~~~l~~~g~~v~~~~~~~~~~~~~~~d~~~~l~~i~~~~~~vii~~~~~--~~~~~~~~~a~~~ 264 (953)
.....+...++..|..+.. .. + . ...+..++...+|++++.... .++..++++.++.
T Consensus 12 ~~~~~l~~~L~~~~~~v~~---~~-~----~---~~a~~~~~~~~~dlvi~D~~l~~~~g~~~~~~l~~~ 70 (124)
T 1mb3_A 12 LNMKLFHDLLEAQGYETLQ---TR-E----G---LSALSIARENKPDLILMDIQLPEISGLEVTKWLKED 70 (124)
T ss_dssp HHHHHHHHHHHHTTCEEEE---ES-C----H---HHHHHHHHHHCCSEEEEESBCSSSBHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHcCcEEEE---eC-C----H---HHHHHHHhcCCCCEEEEeCCCCCCCHHHHHHHHHcC
Confidence 4566677778777877642 11 1 2 234455555679999997543 4577788888874
No 442
>3gd5_A Otcase, ornithine carbamoyltransferase; structural genomics, NYSGXRC, target 9454P, operon, amino-acid biosynthesis, ARGI biosynthesis; 2.10A {Gloeobacter violaceus}
Probab=22.60 E-value=6.5e+02 Score=25.94 Aligned_cols=132 Identities=14% Similarity=0.203 Sum_probs=76.9
Q ss_pred EEEeEEEecCCCchhHHHHHHHHHHHHHhcCCCCCCCcEEEEEEecCCCChHHHHHHHHHHHhcCcEEEE--ccCChhhH
Q 002211 50 LNVGAIFSFGTVNGQVSRIAMKAAQDDINSDPRVLGGRKLSITMHDAKFNGFLSIMGALQFMETDTLAIV--GPQSAVMA 127 (953)
Q Consensus 50 i~IG~l~~~~~~~g~~~~~a~~lAve~iN~~g~il~g~~l~l~~~D~~~~~~~a~~~a~~li~~~v~aii--Gp~~S~~a 127 (953)
-.|+.+|--.+. ..+.+++.|+.++ +|..+.+...+++-.-.+.+.-+.+-++.=+++|+ .+. .
T Consensus 49 k~la~lF~e~ST---RTR~SFE~A~~~L-------Gg~~i~l~~~~ss~~kgEsl~DTarvLs~~~D~iviR~~~----~ 114 (323)
T 3gd5_A 49 KVLGLVFLKAST---RTRVSFTVAMYQL-------GGQVIDLSPSNTQVGRGEPVRDTARVLGRYVDGLAIRTFA----Q 114 (323)
T ss_dssp CEEEEEESSCCH---HHHHHHHHHHHHT-------TCEEEEC----------CCHHHHHHHHTTTCSEEEEECSS----H
T ss_pred CEEEEEecCCCc---chHhhHHHHHHHc-------CCeEEEeCcccccCCCCCCHHHHHHHHHHhCCEEEEecCC----h
Confidence 367888876653 6789999999996 35556654444443333444445555565344444 543 2
Q ss_pred HHHHHhhhhCCCcEEEeecCCCCCCCCCCCcEEEccCChHHHHHHHHHHH---HHcC---CcEEEEEEecCccccchHHH
Q 002211 128 HVLSHLANELQVPLLSFTALDPTLSPLQYPFFVQTAPNDLYLMSAIAEMV---SYFG---WGEVIAIFNDDDQGRNGVTA 201 (953)
Q Consensus 128 ~av~~v~~~~~vP~Is~~at~~~ls~~~~p~~fr~~p~d~~~~~ai~~~l---~~~~---w~~vaii~~d~~~g~~~~~~ 201 (953)
.++..+++..+||+|.-+. + ...| .+++++++ +++| ..+|+++. |. ......
T Consensus 115 ~~~~~lA~~~~vPVINag~-~-----~~HP------------tQaLaDl~Ti~e~~g~l~glkva~vG--D~--~rva~S 172 (323)
T 3gd5_A 115 TELEEYAHYAGIPVINALT-D-----HEHP------------CQVVADLLTIRENFGRLAGLKLAYVG--DG--NNVAHS 172 (323)
T ss_dssp HHHHHHHHHHCSCEEEEEC-S-----SCCH------------HHHHHHHHHHHHHHSCCTTCEEEEES--CC--CHHHHH
T ss_pred hHHHHHHHhCCCCEEeCCC-C-----CCCc------------HHHHHHHHHHHHHhCCCCCCEEEEEC--CC--CcHHHH
Confidence 3445666777899997542 1 2223 35666663 4444 46777775 22 567778
Q ss_pred HHHHHHhcCcEEEEEE
Q 002211 202 LGDKLAEIRCKISYKS 217 (953)
Q Consensus 202 l~~~l~~~g~~v~~~~ 217 (953)
+...+...|.+|....
T Consensus 173 l~~~~~~~G~~v~~~~ 188 (323)
T 3gd5_A 173 LLLGCAKVGMSIAVAT 188 (323)
T ss_dssp HHHHHHHHTCEEEEEC
T ss_pred HHHHHHHcCCEEEEEC
Confidence 8888888898876643
No 443
>3fxb_A Trap dicarboxylate transporter, DCTP subunit; periplasmic substrate binding protein, selectivity helix, TR membrane; HET: 4CS; 2.90A {Silicibacter pomeroyi dss-3}
Probab=22.42 E-value=76 Score=33.18 Aligned_cols=101 Identities=7% Similarity=0.026 Sum_probs=61.0
Q ss_pred CCCCChHHhhhCCCeEEEEeCchHHHHHHHhhCCCccceEeCCCHHHHHHHHHcCCcEEEEccchhHHHH-HhcCcceEE
Q 002211 700 SPIKGIDTLMTSNDRVGYQVGSFAENYLIEELSIPKSRLVALGSPEEYAIALENRTVAAVVDERPYIDLF-LSDHCQFSV 778 (953)
Q Consensus 700 ~~I~sl~dL~~~~~~ig~~~~s~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~g~~~a~~~~~~~~~~~-~~~~~~l~~ 778 (953)
.+|++++||. |.+|.+..+....+.+ +.++.. -++. ...|...+|++|-+|+........... ..+-+++..
T Consensus 144 kpI~s~~Dlk--GlKiR~~~~~~~~~~~-~alGa~---pv~m-~~~Evy~ALq~GvvDg~e~~~~~~~~~~~~Ev~ky~~ 216 (326)
T 3fxb_A 144 TPVTTCSDLD--EVKFRVMTNPLLVESY-KAFGAT---PTPL-PWGEVYGGLQTNVIQGQENPTFFLYSTKIYEVTDYIT 216 (326)
T ss_dssp SCCSSGGGST--TCEEEECSCHHHHHHH-HHHTSE---EEEC-CGGGHHHHHHTTSCCEEEEEHHHHHHTTGGGSCSEEE
T ss_pred CCCCChHHhC--CCEEEecCCHHHHHHH-HHcCCe---eeec-CHHHHHHHHHcCCcceEecCHHHHHhccHhhhcceeE
Confidence 5899999996 9999988766666766 456532 2332 667899999999999998655433211 112234444
Q ss_pred eCCccccCccEEEecCCC--cchHHHHHHHHh
Q 002211 779 RGQEFTKSGWGFAFPRDS--PLAIDMSTAILT 808 (953)
Q Consensus 779 ~~~~~~~~~~~~~~~k~s--pl~~~~n~~i~~ 808 (953)
..... .....+++.++. -|-+....+|..
T Consensus 217 ~~~~~-~~~~~~~~n~~~w~~L~~e~q~~i~~ 247 (326)
T 3fxb_A 217 YAGHN-NFTTAVMANKDFYDGLSAEDQQLVQN 247 (326)
T ss_dssp ECCCC-EEEEEEEEEHHHHHHSCHHHHHHHHH
T ss_pred EcCcc-ccceEEEEeHHHHhcCCHHHHHHHHH
Confidence 33322 234456666652 144444444443
No 444
>3hzh_A Chemotaxis response regulator (CHEY-3); phosphatase, complex, response regulator, receiver domain, two-component signal transduction; HET: BFD; 1.96A {Borrelia burgdorferi}
Probab=22.36 E-value=4e+02 Score=23.37 Aligned_cols=59 Identities=10% Similarity=0.095 Sum_probs=38.0
Q ss_pred chHHHHHHHHHhcCcEEEEEEecCCCCCCChHHHHHHHHHHhcC--CceEEEEEcc--hhhHHHHHHHHHHcC
Q 002211 197 NGVTALGDKLAEIRCKISYKSALPPDQSVTETDVRNELVKVRMM--EARVIVVHGY--SRTGLMVFDVAQRLG 265 (953)
Q Consensus 197 ~~~~~l~~~l~~~g~~v~~~~~~~~~~~~~~~d~~~~l~~i~~~--~~~vii~~~~--~~~~~~~~~~a~~~g 265 (953)
.....+.+.+++.|..+... . .+....+..+++. .+|+|++... ..++..+++++++..
T Consensus 47 ~~~~~l~~~L~~~g~~v~~~--~--------~~~~~al~~l~~~~~~~dliilD~~l~~~~g~~~~~~lr~~~ 109 (157)
T 3hzh_A 47 FTVKQLTQIFTSEGFNIIDT--A--------ADGEEAVIKYKNHYPNIDIVTLXITMPKMDGITCLSNIMEFD 109 (157)
T ss_dssp HHHHHHHHHHHHTTCEEEEE--E--------SSHHHHHHHHHHHGGGCCEEEECSSCSSSCHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHhCCCeEEEE--E--------CCHHHHHHHHHhcCCCCCEEEEeccCCCccHHHHHHHHHhhC
Confidence 45667777788888776522 1 1223445555555 6899998754 356778888888765
No 445
>2gkg_A Response regulator homolog; social motility, receiver domain, signalling, high resolutio signaling protein; 1.00A {Myxococcus xanthus} PDB: 2i6f_A 2nt4_A 2nt3_A
Probab=22.26 E-value=3.3e+02 Score=22.40 Aligned_cols=57 Identities=11% Similarity=0.105 Sum_probs=38.4
Q ss_pred chHHHHHHHHHhcCcEEEEEEecCCCCCCChHHHHHHHHHHhcCCceEEEEEcchh---hHHHHHHHHHHc
Q 002211 197 NGVTALGDKLAEIRCKISYKSALPPDQSVTETDVRNELVKVRMMEARVIVVHGYSR---TGLMVFDVAQRL 264 (953)
Q Consensus 197 ~~~~~l~~~l~~~g~~v~~~~~~~~~~~~~~~d~~~~l~~i~~~~~~vii~~~~~~---~~~~~~~~a~~~ 264 (953)
.....+.+.+++.|..+.. .. +....+..++...+|+|++....+ ++..++++.++.
T Consensus 16 ~~~~~l~~~L~~~g~~v~~---~~--------~~~~a~~~~~~~~~dlvi~d~~~~~~~~g~~~~~~l~~~ 75 (127)
T 2gkg_A 16 ALSATLRSALEGRGFTVDE---TT--------DGKGSVEQIRRDRPDLVVLAVDLSAGQNGYLICGKLKKD 75 (127)
T ss_dssp HHHHHHHHHHHHHTCEEEE---EC--------CHHHHHHHHHHHCCSEEEEESBCGGGCBHHHHHHHHHHS
T ss_pred HHHHHHHHHHHhcCceEEE---ec--------CHHHHHHHHHhcCCCEEEEeCCCCCCCCHHHHHHHHhcC
Confidence 4566777788888887652 11 123345555556799999976543 678888888886
No 446
>3hdg_A Uncharacterized protein; two-component sensor activity, response regulator, PSI-II, 11227F, NYSGXRC, structural genomics; 2.27A {Wolinella succinogenes} SCOP: c.23.1.0
Probab=22.26 E-value=3.1e+02 Score=23.24 Aligned_cols=58 Identities=14% Similarity=0.045 Sum_probs=38.2
Q ss_pred chHHHHHHHHHhcCcEEEEEEecCCCCCCChHHHHHHHHHHhcCCceEEEEEcc--hhhHHHHHHHHHHcC
Q 002211 197 NGVTALGDKLAEIRCKISYKSALPPDQSVTETDVRNELVKVRMMEARVIVVHGY--SRTGLMVFDVAQRLG 265 (953)
Q Consensus 197 ~~~~~l~~~l~~~g~~v~~~~~~~~~~~~~~~d~~~~l~~i~~~~~~vii~~~~--~~~~~~~~~~a~~~g 265 (953)
.....+.+.+++.|..+... .+....+..+++..+|+|++... ..++..+++++++..
T Consensus 18 ~~~~~l~~~L~~~~~~v~~~-----------~~~~~a~~~l~~~~~dlvi~d~~l~~~~g~~~~~~l~~~~ 77 (137)
T 3hdg_A 18 DAREWLSTIISNHFPEVWSA-----------GDGEEGERLFGLHAPDVIITDIRMPKLGGLEMLDRIKAGG 77 (137)
T ss_dssp HHHHHHHHHHHTTCSCEEEE-----------SSHHHHHHHHHHHCCSEEEECSSCSSSCHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHhcCcEEEEE-----------CCHHHHHHHHhccCCCEEEEeCCCCCCCHHHHHHHHHhcC
Confidence 45667777787766554321 12334556666678999999754 356788888888865
No 447
>1byk_A Protein (trehalose operon repressor); LACI family, phosphate binding, protein structure, trehalose repressor, gene regulation; HET: T6P; 2.50A {Escherichia coli} SCOP: c.93.1.1
Probab=22.22 E-value=1.7e+02 Score=28.55 Aligned_cols=63 Identities=13% Similarity=0.063 Sum_probs=45.9
Q ss_pred cEEEEEEec--CccccchHHHHHHHHHhcCcEEEEEEecCCCCCCChHHHHHHHHHHhcCCceEEEEEcc
Q 002211 183 GEVIAIFND--DDQGRNGVTALGDKLAEIRCKISYKSALPPDQSVTETDVRNELVKVRMMEARVIVVHGY 250 (953)
Q Consensus 183 ~~vaii~~d--~~~g~~~~~~l~~~l~~~g~~v~~~~~~~~~~~~~~~d~~~~l~~i~~~~~~vii~~~~ 250 (953)
+.|+++..+ ++|.......+.+++++.|..+..... . .+...-...++.+...++|.||+...
T Consensus 3 ~~Igvi~~~~~~~~~~~~~~gi~~~~~~~g~~~~~~~~-~----~~~~~~~~~~~~l~~~~vdgiI~~~~ 67 (255)
T 1byk_A 3 KVVAIIVTRLDSLSENLAVQTMLPAFYEQGYDPIMMES-Q----FSPQLVAEHLGVLKRRNIDGVVLFGF 67 (255)
T ss_dssp CEEEEEESCTTCHHHHHHHHHHHHHHHHHTCEEEEEEC-T----TCHHHHHHHHHHHHTTTCCEEEEECC
T ss_pred CEEEEEeCCCCCccHHHHHHHHHHHHHHcCCEEEEEeC-C----CcHHHHHHHHHHHHhcCCCEEEEecC
Confidence 468888753 567778889999999999998765421 1 12444556788888889999998764
No 448
>3hly_A Flavodoxin-like domain; Q5MZP6_SYNP6, flavoprotein, DFA1, SNR135D, NESG, structural genomics, PSI-2; 2.40A {Synechococcus elongatus pcc 6301}
Probab=21.92 E-value=1.6e+02 Score=26.72 Aligned_cols=86 Identities=14% Similarity=0.054 Sum_probs=46.2
Q ss_pred EEEEEEecCcccc--chHHHHHHHHHhcCcEEEEEEecCCCCCCChHHHHHHHHHHhcCCceEEEEEcch--hhH--HHH
Q 002211 184 EVIAIFNDDDQGR--NGVTALGDKLAEIRCKISYKSALPPDQSVTETDVRNELVKVRMMEARVIVVHGYS--RTG--LMV 257 (953)
Q Consensus 184 ~vaii~~d~~~g~--~~~~~l~~~l~~~g~~v~~~~~~~~~~~~~~~d~~~~l~~i~~~~~~vii~~~~~--~~~--~~~ 257 (953)
++.|+|. +.+|. ..++.+.+.+++.|+++... +.. ..+....+.++. +.|.||+.++. ... ..+
T Consensus 2 kv~IvY~-S~tGnT~~~A~~ia~~l~~~g~~v~~~---~~~----~~~~~~~~~~~~--~~d~ii~Gspty~g~~p~~~f 71 (161)
T 3hly_A 2 SVLIGYL-SDYGYSDRLSQAIGRGLVKTGVAVEMV---DLR----AVDPQELIEAVS--SARGIVLGTPPSQPSEAVATA 71 (161)
T ss_dssp CEEEEEC-TTSTTHHHHHHHHHHHHHHTTCCEEEE---ETT----TCCHHHHHHHHH--HCSEEEEECCBSSCCHHHHHH
T ss_pred EEEEEEE-CCChHHHHHHHHHHHHHHhCCCeEEEE---ECC----CCCHHHHHHHHH--hCCEEEEEcCCcCCchhHHHH
Confidence 4677773 33444 46788888888888765432 222 223344444553 35677765432 222 467
Q ss_pred HHHHHHcCCCCCceEEEEeCcc
Q 002211 258 FDVAQRLGMMDSGYVWIATTWL 279 (953)
Q Consensus 258 ~~~a~~~g~~~~~~~wi~~~~~ 279 (953)
+.......+.+.....+++.++
T Consensus 72 l~~l~~~~l~gk~v~~fgs~g~ 93 (161)
T 3hly_A 72 LSTIFAAAHNKQAIGLFDSYGG 93 (161)
T ss_dssp HHHHHHHCCTTSEEEEECCCCS
T ss_pred HHHHHhhhhCCCEEEEEEcCCC
Confidence 7776654454444444444433
No 449
>5nul_A Flavodoxin; electron transport, flavoprotein, FMN; HET: FMN; 1.60A {Clostridium beijerinckii} SCOP: c.23.5.1 PDB: 2flv_A* 2fvx_A* 1fld_A* 3nll_A* 1fvx_A* 1fla_A* 4nll_A* 5nll_A* 2fox_A* 5ull_A* 2fdx_A* 2fax_A* 6nul_A* 1fln_A* 4nul_A*
Probab=21.87 E-value=2.1e+02 Score=24.91 Aligned_cols=82 Identities=1% Similarity=0.007 Sum_probs=0.0
Q ss_pred EEEEE-ecCccccchHHHHHHHHHhcCcEEEEEEecCCCCCCChHHHHHHHHHHhcCCceEEEEEcc-------hh-hHH
Q 002211 185 VIAIF-NDDDQGRNGVTALGDKLAEIRCKISYKSALPPDQSVTETDVRNELVKVRMMEARVIVVHGY-------SR-TGL 255 (953)
Q Consensus 185 vaii~-~d~~~g~~~~~~l~~~l~~~g~~v~~~~~~~~~~~~~~~d~~~~l~~i~~~~~~vii~~~~-------~~-~~~ 255 (953)
|.|+| +.+...+..++.+.+.+++.|.++.....-... ..++ .+.|.|++.++ ++ .+.
T Consensus 1 i~I~Y~S~tGnT~~iA~~ia~~l~~~g~~v~~~~~~~~~----~~~l---------~~~d~iiig~pty~~g~~p~~~~~ 67 (138)
T 5nul_A 1 MKIVYWSGTGNTEKMAELIAKGIIESGKDVNTINVSDVN----IDEL---------LNEDILILGCSAMTDEVLEESEFE 67 (138)
T ss_dssp CEEEEECSSSHHHHHHHHHHHHHHHTTCCCEEEEGGGCC----HHHH---------TTCSEEEEEECCBTTTBCCTTTHH
T ss_pred CEEEEECCCchHHHHHHHHHHHHHHCCCeEEEEEhhhCC----HHHH---------hhCCEEEEEcCccCCCCCChHHHH
Q ss_pred HHHHHHHHcCCCCCceEEEEeCccc
Q 002211 256 MVFDVAQRLGMMDSGYVWIATTWLS 280 (953)
Q Consensus 256 ~~~~~a~~~g~~~~~~~wi~~~~~~ 280 (953)
.+++..... +.+..+..+++.++.
T Consensus 68 ~fl~~l~~~-l~~k~~~~f~t~g~~ 91 (138)
T 5nul_A 68 PFIEEISTK-ISGKKVALFGSYGWG 91 (138)
T ss_dssp HHHHHHGGG-CTTCEEEEEEEESSS
T ss_pred HHHHHHHhh-cCCCEEEEEEecCCC
No 450
>3cs3_A Sugar-binding transcriptional regulator, LACI FAM; structural genomics, sugar-binding transcriptional regulator structure initiative; 2.40A {Enterococcus faecalis}
Probab=21.78 E-value=4.4e+02 Score=25.87 Aligned_cols=114 Identities=12% Similarity=0.091 Sum_probs=63.9
Q ss_pred EEeEEEecC-CCchhHHHHHHHHHHHHHhcCCCCCCCcEEEEEEecCCCChHHHHHHHHHHHhc---CcEEEEccCChhh
Q 002211 51 NVGAIFSFG-TVNGQVSRIAMKAAQDDINSDPRVLGGRKLSITMHDAKFNGFLSIMGALQFMET---DTLAIVGPQSAVM 126 (953)
Q Consensus 51 ~IG~l~~~~-~~~g~~~~~a~~lAve~iN~~g~il~g~~l~l~~~D~~~~~~~a~~~a~~li~~---~v~aiiGp~~S~~ 126 (953)
+||++.... ......-..|++-|+++. |.++. +.....+...+...+.++++. ++.||+.. +...
T Consensus 120 ~i~~i~~~~~~~~~~~R~~gf~~~l~~~--------g~~~~--~~~~~~~~~~~~~~~~~~l~~~~~~~~ai~~~-~d~~ 188 (277)
T 3cs3_A 120 KVLLLSGPEKGYDSQERLAVSTRELTRF--------GIPYE--IIQGDFTEPSGYAAAKKILSQPQTEPVDVFAF-NDEM 188 (277)
T ss_dssp CEEEEECCTTSHHHHHHHHHHHHHHHHT--------TCCEE--EEECCSSHHHHHHHHHHHTTSCCCSSEEEEES-SHHH
T ss_pred eEEEEeCCccCccHHHHHHHHHHHHHHc--------CCCee--EEeCCCChhHHHHHHHHHHhcCCCCCcEEEEc-ChHH
Confidence 567765543 223345567888777763 22333 234445677788888888875 68999974 4455
Q ss_pred HHHHHHhhhhCC--Cc----EEEeecCCCCCCCCCCCcEEEccCChHHHHHHHHHHH
Q 002211 127 AHVLSHLANELQ--VP----LLSFTALDPTLSPLQYPFFVQTAPNDLYLMSAIAEMV 177 (953)
Q Consensus 127 a~av~~v~~~~~--vP----~Is~~at~~~ls~~~~p~~fr~~p~d~~~~~ai~~~l 177 (953)
+..+...+.+.+ || ++++.... ......|-+-.+..+...++...++.+
T Consensus 189 a~g~~~al~~~g~~vP~di~vvg~d~~~--~~~~~~p~lttv~~~~~~~g~~a~~~l 243 (277)
T 3cs3_A 189 AIGVYKYVAETNYQMGKDIRIIGFDNSE--LGAFVQPRLATIAYSKHRWGMVAAEKI 243 (277)
T ss_dssp HHHHHHHHTTSSCCBTTTEEEECSSCCH--HHHHSSSCCBEEECCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCCCCCcEEEEEeCCcH--HHhccCCceeEEecCHHHHHHHHHHHH
Confidence 666667777665 34 44443221 111112333333445556666666654
No 451
>1dxh_A Ornithine carbamoyltransferase; transcarbamylase; 2.50A {Pseudomonas aeruginosa} SCOP: c.78.1.1 c.78.1.1 PDB: 1ort_A
Probab=21.65 E-value=6.9e+02 Score=25.89 Aligned_cols=133 Identities=17% Similarity=0.132 Sum_probs=79.4
Q ss_pred EEEeEEEecCCCchhHHHHHHHHHHHHHhcCCCCCCCcEEEEEEecCCCChHHHHHHHHHHHhc--CcEEEEccCChhhH
Q 002211 50 LNVGAIFSFGTVNGQVSRIAMKAAQDDINSDPRVLGGRKLSITMHDAKFNGFLSIMGALQFMET--DTLAIVGPQSAVMA 127 (953)
Q Consensus 50 i~IG~l~~~~~~~g~~~~~a~~lAve~iN~~g~il~g~~l~l~~~D~~~~~~~a~~~a~~li~~--~v~aiiGp~~S~~a 127 (953)
-.|+.+|--.+ ...+.+++.|+.++ +|..+.+-..+++-.-.+.+.-+.+-++. .++++=++. .
T Consensus 46 k~la~lF~e~S---TRTR~SFE~A~~~L-------Gg~~i~l~~~~ss~~kgEsl~DTarvLs~~~D~IviR~~~----~ 111 (335)
T 1dxh_A 46 KNIALIFEKTS---TRTRCAFEVAAYDQ-------GANVTYIDPNSSQIGHKESMKDTARVLGRMYDAIEYRGFK----Q 111 (335)
T ss_dssp CEEEEEESSCC---HHHHHHHHHHHHHT-------TCEEEEECTTTCCBTTTBCHHHHHHHHHHHCSEEEEECSC----H
T ss_pred CEEEEEecCCC---cchHHHHHHHHHHc-------CCeEEEECCccccCcCCCcHHHHHHHHHhhCCEEEEecCC----h
Confidence 45788887655 36789999999996 35555553333332222233333344444 555555653 2
Q ss_pred HHHHHhhhhCCCcEEEeecCCCCCCCCCCCcEEEccCChHHHHHHHHHHH---HHcC--C--cEEEEEEecCccccchHH
Q 002211 128 HVLSHLANELQVPLLSFTALDPTLSPLQYPFFVQTAPNDLYLMSAIAEMV---SYFG--W--GEVIAIFNDDDQGRNGVT 200 (953)
Q Consensus 128 ~av~~v~~~~~vP~Is~~at~~~ls~~~~p~~fr~~p~d~~~~~ai~~~l---~~~~--w--~~vaii~~d~~~g~~~~~ 200 (953)
.++..+++..+||+|.-. + +...| .+++++++ +++| . .+|+++. |.. .....
T Consensus 112 ~~~~~lA~~s~vPVINa~-~-----~~~HP------------tQ~LaDl~Ti~e~~g~~l~gl~va~vG--D~~-~~va~ 170 (335)
T 1dxh_A 112 EIVEELAKFAGVPVFNGL-T-----DEYHP------------TQMLADVLTMREHSDKPLHDISYAYLG--DAR-NNMGN 170 (335)
T ss_dssp HHHHHHHHHSSSCEEEEE-C-----SSCCH------------HHHHHHHHHHHHTCSSCGGGCEEEEES--CCS-SHHHH
T ss_pred hHHHHHHHhCCCCEEcCC-C-----CCCCc------------HHHHHHHHHHHHHcCCCcCCeEEEEec--CCc-cchHH
Confidence 344566777789999843 2 22233 35677763 4566 2 4555554 332 46788
Q ss_pred HHHHHHHhcCcEEEEEE
Q 002211 201 ALGDKLAEIRCKISYKS 217 (953)
Q Consensus 201 ~l~~~l~~~g~~v~~~~ 217 (953)
.+...+...|.+|....
T Consensus 171 Sl~~~~~~~G~~v~~~~ 187 (335)
T 1dxh_A 171 SLLLIGAKLGMDVRIAA 187 (335)
T ss_dssp HHHHHHHHTTCEEEEEC
T ss_pred HHHHHHHHcCCEEEEEC
Confidence 88889999998877643
No 452
>3lft_A Uncharacterized protein; ABC, ATPase, cassette, L-Trp, PSI, MCSG, structural genomics center for structural genomics; HET: MSE TRP; 1.35A {Streptococcus pneumoniae}
Probab=21.53 E-value=1.2e+02 Score=30.89 Aligned_cols=65 Identities=9% Similarity=-0.014 Sum_probs=45.9
Q ss_pred cEEEEEE-ecCccccchHHHHHHHHHhcCc---EEEEEEecCCCCCCChHHHHHHHHHHhcCCceEEEEEcc
Q 002211 183 GEVIAIF-NDDDQGRNGVTALGDKLAEIRC---KISYKSALPPDQSVTETDVRNELVKVRMMEARVIVVHGY 250 (953)
Q Consensus 183 ~~vaii~-~d~~~g~~~~~~l~~~l~~~g~---~v~~~~~~~~~~~~~~~d~~~~l~~i~~~~~~vii~~~~ 250 (953)
++|+++- .+++|.....+.+.+.+++.|. .+..... ... .+.+.-...++++.+.++|.||+.+.
T Consensus 3 ~~Igvi~~~~~p~~~~i~~gi~~~l~~~gy~g~~v~l~~~-~~~--~~~~~~~~~~~~l~~~~vDgII~~~~ 71 (295)
T 3lft_A 3 AKIGVLQFVSHPSLDLIYKGIQDGLAEEGYKDDQVKIDFM-NSE--GDQSKVATMSKQLVANGNDLVVGIAT 71 (295)
T ss_dssp EEEEEEECSCCHHHHHHHHHHHHHHHHTTCCGGGEEEEEE-ECT--TCHHHHHHHHHHHTTSSCSEEEEESH
T ss_pred eEEEEEEccCChhHHHHHHHHHHHHHHcCCCCCceEEEEe-cCC--CCHHHHHHHHHHHHhcCCCEEEECCc
Confidence 5678772 2466778889999999999998 5433211 111 23555677889999999999998764
No 453
>2jwa_A Receptor tyrosine-protein kinase ERBB-2; transmembrane helix dimer, protein kinase receptor membrane domain, ATP-binding, glycoprotein; NMR {Homo sapiens} PDB: 2ks1_A
Probab=21.51 E-value=1.7e+02 Score=20.23 Aligned_cols=22 Identities=5% Similarity=0.024 Sum_probs=9.0
Q ss_pred HHHHHHHHHHHHHHHHHHHhhc
Q 002211 853 GIACFLALLAYFCLMLRQFKKY 874 (953)
Q Consensus 853 ~~g~~lallvf~~e~~~~~~~~ 874 (953)
.+|+++.+++.+.-.+|.+||+
T Consensus 18 vVGvll~vi~~l~~~~~~RRR~ 39 (44)
T 2jwa_A 18 VVGILLVVVLGVVFGILIKRRQ 39 (44)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHhheehhh
Confidence 3343333333344444444443
No 454
>2lpm_A Two-component response regulator; transcription regulator; NMR {Sinorhizobium meliloti}
Probab=21.45 E-value=61 Score=28.27 Aligned_cols=67 Identities=12% Similarity=0.177 Sum_probs=43.3
Q ss_pred EEEecCccccchHHHHHHHHHhcCcEEEEEEecCCCCCCChHHHHHHHHHHhcCCceEEEEEcc--hhhHHHHHHHHHHc
Q 002211 187 AIFNDDDQGRNGVTALGDKLAEIRCKISYKSALPPDQSVTETDVRNELVKVRMMEARVIVVHGY--SRTGLMVFDVAQRL 264 (953)
Q Consensus 187 ii~~d~~~g~~~~~~l~~~l~~~g~~v~~~~~~~~~~~~~~~d~~~~l~~i~~~~~~vii~~~~--~~~~~~~~~~a~~~ 264 (953)
+|.+|+. .....+.+.|++.|.+|+.. ..+-...+..+++..+|+|++... .-++..+.++.++.
T Consensus 12 LiVdD~~---~~~~~l~~~L~~~G~~v~~~----------a~~g~eAl~~~~~~~~DlvllDi~mP~~~G~el~~~lr~~ 78 (123)
T 2lpm_A 12 LVVEDES---MIAMLIEDTLCELGHEVAAT----------ASRMQEALDIARKGQFDIAIIDVNLDGEPSYPVADILAER 78 (123)
T ss_dssp EEESSST---TTSHHHHHHHHHHCCCCCBC----------SCCHHHHHHHHHHCCSSEEEECSSSSSCCSHHHHHHHHHT
T ss_pred EEEeCCH---HHHHHHHHHHHHCCCEEEEE----------ECCHHHHHHHHHhCCCCEEEEecCCCCCCHHHHHHHHHcC
Confidence 3444444 34556677788888765321 123345677778889999999644 45667788888876
Q ss_pred CC
Q 002211 265 GM 266 (953)
Q Consensus 265 g~ 266 (953)
+.
T Consensus 79 ~i 80 (123)
T 2lpm_A 79 NV 80 (123)
T ss_dssp CC
T ss_pred CC
Confidence 53
No 455
>3f2i_A ALR0221 protein; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG, function; 2.00A {Nostoc SP}
Probab=21.42 E-value=2.3e+02 Score=26.15 Aligned_cols=93 Identities=13% Similarity=0.042 Sum_probs=53.2
Q ss_pred CChHHHHHHHHHHHHHcCCcEEEEEEecCccccchHHHHHHHHHhcCcEEEEEEecCCCCCCChHHHHHHHHHHhc----
Q 002211 164 PNDLYLMSAIAEMVSYFGWGEVIAIFNDDDQGRNGVTALGDKLAEIRCKISYKSALPPDQSVTETDVRNELVKVRM---- 239 (953)
Q Consensus 164 p~d~~~~~ai~~~l~~~~w~~vaii~~d~~~g~~~~~~l~~~l~~~g~~v~~~~~~~~~~~~~~~d~~~~l~~i~~---- 239 (953)
+.-..|++.+++.++..+..--.++.+...-.+..++.+.+. .....+.....+.+. .+....+..+.+
T Consensus 27 ~~G~~qA~~~~~~L~~~~~~~~~i~sSp~~Ra~qTa~~l~~~--~~~~~~~~~~~L~~~-----~~~~~~~~~l~~~~~~ 99 (172)
T 3f2i_A 27 QEGKQKTEKVAYRLVKLGRQFDLIVTSPLIRARQTAEILLAS--GLSCQLEESNHLAPN-----GNIFNWLDYWLKPKNF 99 (172)
T ss_dssp HHHHHHHHHHHHHHHHTTCCCSEEEECSSHHHHHHHHHHHHT--TSCSCEEECGGGSTT-----CCHHHHHHHTHHHHCC
T ss_pred HHHHHHHHHHHHHHHhcCCCCCEEEECChHHHHHHHHHHHhc--CCCCCeEECcccCCc-----cCHHHHHHHHHHhccC
Confidence 344678999999998865443344444443333334444333 122334433333222 334444555542
Q ss_pred CCceEEEEEcchhhHHHHHHHHHH
Q 002211 240 MEARVIVVHGYSRTGLMVFDVAQR 263 (953)
Q Consensus 240 ~~~~vii~~~~~~~~~~~~~~a~~ 263 (953)
.+.+.+++++..+....++..+..
T Consensus 100 ~~~~~vllVgH~P~l~~l~~~L~~ 123 (172)
T 3f2i_A 100 PENAQIAIVGHEPCLSNWTEILLW 123 (172)
T ss_dssp CTTCEEEEEECTTHHHHHHHHHHH
T ss_pred CCCCEEEEEeCChHHHHHHHHHhc
Confidence 567788888998888888887765
No 456
>3a10_A Response regulator; phosphoacceptor, signaling protein; HET: MSE PG4; 1.63A {Thermotoga maritima} PDB: 3a0r_B* 3a0u_A*
Probab=21.30 E-value=3.3e+02 Score=22.07 Aligned_cols=58 Identities=17% Similarity=0.077 Sum_probs=38.0
Q ss_pred chHHHHHHHHHhcCcEEEEEEecCCCCCCChHHHHHHHHHHhcCCceEEEEEcch--hhHHHHHHHHHHcC
Q 002211 197 NGVTALGDKLAEIRCKISYKSALPPDQSVTETDVRNELVKVRMMEARVIVVHGYS--RTGLMVFDVAQRLG 265 (953)
Q Consensus 197 ~~~~~l~~~l~~~g~~v~~~~~~~~~~~~~~~d~~~~l~~i~~~~~~vii~~~~~--~~~~~~~~~a~~~g 265 (953)
.....+...+++.|..+.. .. +....+..+....+|++++.... .++..++++.++..
T Consensus 12 ~~~~~l~~~l~~~~~~v~~---~~--------~~~~a~~~~~~~~~dlvl~D~~l~~~~g~~~~~~l~~~~ 71 (116)
T 3a10_A 12 NIRELLKEELQEEGYEIDT---AE--------NGEEALKKFFSGNYDLVILDIEMPGISGLEVAGEIRKKK 71 (116)
T ss_dssp HHHHHHHHHHHHTTCEEEE---ES--------SHHHHHHHHHHSCCSEEEECSCCSSSCHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHCCCEEEE---eC--------CHHHHHHHHhcCCCCEEEEECCCCCCCHHHHHHHHHccC
Confidence 4556677778878877642 11 22344556666789999997543 45677888887754
No 457
>1pii_A N-(5'phosphoribosyl)anthranilate isomerase; bifunctional(isomerase and synthase); 2.00A {Escherichia coli} SCOP: c.1.2.4 c.1.2.4 PDB: 1jcm_P* 2kzh_A
Probab=21.21 E-value=1.5e+02 Score=32.56 Aligned_cols=86 Identities=14% Similarity=0.026 Sum_probs=58.5
Q ss_pred HHHHHHHHHcCCcEEEEEEecCccccchHHHHHHHHHhcCcEEEEEEecCCCCCCChHHHHHHHHHHhcCCceEEEEEcc
Q 002211 171 SAIAEMVSYFGWGEVIAIFNDDDQGRNGVTALGDKLAEIRCKISYKSALPPDQSVTETDVRNELVKVRMMEARVIVVHGY 250 (953)
Q Consensus 171 ~ai~~~l~~~~w~~vaii~~d~~~g~~~~~~l~~~l~~~g~~v~~~~~~~~~~~~~~~d~~~~l~~i~~~~~~vii~~~~ 250 (953)
..+|...... ..-+.+++ |..|..+..+.+...-+..++.|..+..+ . +.+ ++.+.+..++|+|.+...
T Consensus 71 ~~iA~~y~~~-A~~IsvLT-d~~~F~gs~~dL~~vr~~v~lPvLrKDFI-~------d~~--Qi~ea~~~GAD~ILLi~a 139 (452)
T 1pii_A 71 ARIAAIYKHY-ASAISVLT-DEKYFQGSFNFLPIVSQIAPQPILCKDFI-I------DPY--QIYLARYYQADACLLMLS 139 (452)
T ss_dssp HHHHHHHTTT-CSEEEEEC-CSTTTCCCTTHHHHHHHHCCSCEEEESCC-C------SHH--HHHHHHHTTCSEEEEETT
T ss_pred HHHHHHHHhh-CcEEEEEe-cccccCCCHHHHHHHHHhcCCCeEEEecc-C------CHH--HHHHHHHcCCCEEEEEcc
Confidence 3444444444 55566665 56676777777776656667777655433 2 223 467788999999999866
Q ss_pred h---hhHHHHHHHHHHcCCC
Q 002211 251 S---RTGLMVFDVAQRLGMM 267 (953)
Q Consensus 251 ~---~~~~~~~~~a~~~g~~ 267 (953)
. .+...+++.++++||.
T Consensus 140 ~l~~~~l~~l~~~a~~lgm~ 159 (452)
T 1pii_A 140 VLDDDQYRQLAAVAHSLEMG 159 (452)
T ss_dssp TCCHHHHHHHHHHHHHTTCE
T ss_pred cCCHHHHHHHHHHHHHcCCe
Confidence 4 5788899999999984
No 458
>3lou_A Formyltetrahydrofolate deformylase; structural genomics, JOI for structural genomics, JCSG, protein structure initiative hydrolase; HET: MSE; 1.90A {Burkholderia mallei}
Probab=21.19 E-value=5.1e+02 Score=26.26 Aligned_cols=97 Identities=15% Similarity=0.115 Sum_probs=59.2
Q ss_pred cEEEEccCChhhHHHHHHhhhhCCCcEEEeecCCCCCCCCCCCcEEEcc---C------ChHHHHHHHHHHHHHcC----
Q 002211 115 TLAIVGPQSAVMAHVLSHLANELQVPLLSFTALDPTLSPLQYPFFVQTA---P------NDLYLMSAIAEMVSYFG---- 181 (953)
Q Consensus 115 v~aiiGp~~S~~a~av~~v~~~~~vP~Is~~at~~~ls~~~~p~~fr~~---p------~d~~~~~ai~~~l~~~~---- 181 (953)
+.-++||...+...+++.++.+.++=++....+.... .--||+|+. + +....-+++.++.+.++
T Consensus 12 vLtv~c~Dr~GIVa~Vs~~La~~g~NI~d~~q~~d~~---~g~Ffmr~~~~~~~~~~~~~~~~L~~~f~~la~~~~m~~~ 88 (292)
T 3lou_A 12 VLTLSCPSAAGQVAAVVGLLDRHRCYVDELTVFDDDL---SARFFVRCVFHATDDADALRVDALRREFEPIAERFRMQWA 88 (292)
T ss_dssp EEEEEEESCSCHHHHHHHHHHHTTEEEEEEEEEEETT---TTEEEEEEEEEECC----CCHHHHHHHHHHHHHHHTCEEE
T ss_pred EEEEEcCCCCCHHHHHHHHHHHCCCCEEeeEEEecCC---CCceEEEEEEEccCcccCCCHHHHHHHHHHHHHhcCcEEE
Confidence 6778899999999999999999988777654442212 224667774 1 12233445555555554
Q ss_pred ------CcEEEEEEecCccccchHHHHHHHHHhc--CcEEEEEE
Q 002211 182 ------WGEVIAIFNDDDQGRNGVTALGDKLAEI--RCKISYKS 217 (953)
Q Consensus 182 ------w~~vaii~~d~~~g~~~~~~l~~~l~~~--g~~v~~~~ 217 (953)
-++++++.+.. |. ..+++.++.+.. +.+|+...
T Consensus 89 l~~~~~~~ri~vl~Sg~--g~-~l~~ll~~~~~g~l~~~i~~Vi 129 (292)
T 3lou_A 89 IHDVAARPKVLIMVSKL--EH-CLADLLFRWKMGELKMDIVGIV 129 (292)
T ss_dssp EEETTSCCEEEEEECSC--CH-HHHHHHHHHHHTSSCCEEEEEE
T ss_pred eeccCCCCEEEEEEcCC--Cc-CHHHHHHHHHcCCCCcEEEEEE
Confidence 35888888655 33 345555555443 34555443
No 459
>4exl_A PBP 1, phosphate-binding protein PSTS 1; center for structural genomics of infectious diseases (csgid national institute of allergy and infectious diseases; 1.70A {Streptococcus pneumoniae}
Probab=21.17 E-value=1.5e+02 Score=29.62 Aligned_cols=70 Identities=11% Similarity=0.045 Sum_probs=45.8
Q ss_pred eHHHHHHHHHhC-CCcccEEEeeCCCCCCCCChHHHHHHHHcCceeEEEecEEEec-C--ccceeeccccceecceEEEE
Q 002211 514 CIDVFLAAVRLL-PYAVPYKFIPYGDGHKNPTYSELINQITTGVFDAAVGDIAIVT-N--RTKAVDFTQPYIESGLVVVA 589 (953)
Q Consensus 514 ~~dll~~la~~l-~~~~~~~~~~~~~~~~n~~~~~~i~~l~~g~~Di~~~~~~~t~-~--r~~~vdft~p~~~~~~~~~v 589 (953)
.-.+++.+.++. +.++++.. +.-.+.+.++.+|++|+++.+..... + ....+ ...|+..+++++++
T Consensus 18 ~~~~~~~F~~~~P~v~i~v~~---------~gS~~gi~~l~~g~~Dig~~~~~~~~~~~~~~~~l-~~~~ia~d~lvvvv 87 (265)
T 4exl_A 18 VEVAADEFGTIHVGKTVNVQG---------GGSGTGLSQVQSGAVDIGNSDVFAEEKDGIDASAL-VDHKVAVAGLALIV 87 (265)
T ss_dssp HHHHHHHHHHHSTTCEEEEEE---------ECHHHHHHHHHTTSSSEEEESSCGGGSTTCCGGGE-ECCEEEEEEEEEEE
T ss_pred HHHHHHHHHHHCCCceEEEee---------CCcHHHHHHHHcCCCccccccCCcchhhcccccCc-eEeeEEEEEEEEEE
Confidence 345667777777 55555543 34778899999999999876432221 0 01111 25788999999999
Q ss_pred eccc
Q 002211 590 PVRK 593 (953)
Q Consensus 590 ~~~~ 593 (953)
+...
T Consensus 88 ~~~~ 91 (265)
T 4exl_A 88 NKEV 91 (265)
T ss_dssp CTTC
T ss_pred CCCC
Confidence 8654
No 460
>3zy2_A Putative GDP-fucose protein O-fucosyltransferase; glycosyltransferase, GT-B, catalytic mechanism,; HET: GDP; 1.54A {Caenorhabditis elegans} PDB: 3zy3_A* 3zy4_A* 3zy5_A* 3zy6_A*
Probab=20.79 E-value=3.1e+02 Score=28.65 Aligned_cols=88 Identities=18% Similarity=0.173 Sum_probs=64.4
Q ss_pred cCChHHHHHHHHHHHHHcCCcEEEEEEecCccccchHHHHHHHHHhcCcEEEEEEecCCCCCCChHHHHHHHHHHhcCCc
Q 002211 163 APNDLYLMSAIAEMVSYFGWGEVIAIFNDDDQGRNGVTALGDKLAEIRCKISYKSALPPDQSVTETDVRNELVKVRMMEA 242 (953)
Q Consensus 163 ~p~d~~~~~ai~~~l~~~~w~~vaii~~d~~~g~~~~~~l~~~l~~~g~~v~~~~~~~~~~~~~~~d~~~~l~~i~~~~~ 242 (953)
.|+....++.+.++++..+.++|.|..+.+. ..+.|+++|++.+++|+. +.+. ...+...--+.+
T Consensus 261 lPSle~I~rqIk~~vk~~~lksVFIATDa~~----~~~ELk~~L~~~~v~vv~---~~pe--------~a~ID~~I~~~A 325 (362)
T 3zy2_A 261 SPSKQQILEQIVEKVGSIGAKSVFVASDKDH----MIDEINEALKPYEIEAHR---QEPD--------DMYTSLAIMGRA 325 (362)
T ss_dssp SCCHHHHHHHHHHHHHHHTCSEEEEEESSCC----CHHHHHHHHGGGTCCEEC---CSSC--------CHHHHHHHHHHS
T ss_pred CCCHHHHHHHHHHHHHhcCCcEEEEecCCHH----HHHHHHHHhhccCceEEE---eCCc--------hhHHHHHHHHhC
Confidence 5788888899999999999999988874332 578899999877877653 3322 345666666779
Q ss_pred eEEEEEcchhhHHHHHHHHHHcC
Q 002211 243 RVIVVHGYSRTGLMVFDVAQRLG 265 (953)
Q Consensus 243 ~vii~~~~~~~~~~~~~~a~~~g 265 (953)
|++|-.+...-...+.++=.-.|
T Consensus 326 ~~FIGN~~SSFSa~I~rERdi~G 348 (362)
T 3zy2_A 326 DLFVGNCVSTFSHIVKRERDHAG 348 (362)
T ss_dssp SEEEECTTCHHHHHHHHHHHHSS
T ss_pred CEeecCccccccHHHHHHHHhcC
Confidence 99998888777776666555556
No 461
>1k68_A Phytochrome response regulator RCPA; phosphorylated aspartate, CHEY homologue, homodimer, (beta/alpha)5, signaling protein; HET: PHD; 1.90A {Tolypothrix SP} SCOP: c.23.1.1
Probab=20.70 E-value=3.8e+02 Score=22.51 Aligned_cols=58 Identities=12% Similarity=0.118 Sum_probs=39.2
Q ss_pred chHHHHHHHHHhcCc--EEEEEEecCCCCCCChHHHHHHHHHHhc-------CCceEEEEEcch--hhHHHHHHHHHHcC
Q 002211 197 NGVTALGDKLAEIRC--KISYKSALPPDQSVTETDVRNELVKVRM-------MEARVIVVHGYS--RTGLMVFDVAQRLG 265 (953)
Q Consensus 197 ~~~~~l~~~l~~~g~--~v~~~~~~~~~~~~~~~d~~~~l~~i~~-------~~~~vii~~~~~--~~~~~~~~~a~~~g 265 (953)
.....+.+.+++.|. .+... .+....+..++. ..+|+|++.... .++..++++.++..
T Consensus 13 ~~~~~l~~~L~~~~~~~~v~~~-----------~~~~~a~~~l~~~~~~~~~~~~dlvi~d~~~~~~~g~~~~~~l~~~~ 81 (140)
T 1k68_A 13 ADIRLIQEALANSTVPHEVVTV-----------RDGMEAMAYLRQEGEYANASRPDLILLXLNLPKKDGREVLAEIKSDP 81 (140)
T ss_dssp HHHHHHHHHHHTCSSCCEEEEE-----------CSHHHHHHHHTTCGGGGSCCCCSEEEECSSCSSSCHHHHHHHHHHST
T ss_pred HHHHHHHHHHHhcCCCceEEEE-----------CCHHHHHHHHHcccccccCCCCcEEEEecCCCcccHHHHHHHHHcCc
Confidence 456778888888887 44421 123445666665 689999997553 46778888888854
No 462
>3rqi_A Response regulator protein; structural genomics, seattle structural genomics center for infectious disease, ssgcid; HET: PHD CIT; 1.70A {Burkholderia pseudomallei}
Probab=20.64 E-value=2.3e+02 Score=26.03 Aligned_cols=58 Identities=14% Similarity=0.021 Sum_probs=39.6
Q ss_pred chHHHHHHHHHhcCcEEEEEEecCCCCCCChHHHHHHHHHHhcCCceEEEEEcc--hhhHHHHHHHHHHcC
Q 002211 197 NGVTALGDKLAEIRCKISYKSALPPDQSVTETDVRNELVKVRMMEARVIVVHGY--SRTGLMVFDVAQRLG 265 (953)
Q Consensus 197 ~~~~~l~~~l~~~g~~v~~~~~~~~~~~~~~~d~~~~l~~i~~~~~~vii~~~~--~~~~~~~~~~a~~~g 265 (953)
.....+...+++.|..|.. . .+....+..++...+|+|++... ..++..+++++++..
T Consensus 18 ~~~~~l~~~L~~~g~~v~~---~--------~~~~~al~~~~~~~~dlvl~D~~lp~~~g~~~~~~l~~~~ 77 (184)
T 3rqi_A 18 VFAGTLARGLERRGYAVRQ---A--------HNKDEALKLAGAEKFEFITVXLHLGNDSGLSLIAPLCDLQ 77 (184)
T ss_dssp HHHHHHHHHHHHTTCEEEE---E--------CSHHHHHHHHTTSCCSEEEECSEETTEESHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHCCCEEEE---e--------CCHHHHHHHHhhCCCCEEEEeccCCCccHHHHHHHHHhcC
Confidence 4566777788888876532 1 12345677777888999999644 346777888888754
No 463
>3g85_A Transcriptional regulator (LACI family); transcription regulator, PSI-II, structural genomics structure initiative; 1.84A {Clostridium acetobutylicum atcc 824}
Probab=20.64 E-value=2.7e+02 Score=27.73 Aligned_cols=120 Identities=12% Similarity=0.030 Sum_probs=68.0
Q ss_pred EEeEEEecC-CCchhHHHHHHHHHHHHHhcCCCCCCCcEEEEEEecCCCChHHHHHHHHHHHhc--CcEEEEccCChhhH
Q 002211 51 NVGAIFSFG-TVNGQVSRIAMKAAQDDINSDPRVLGGRKLSITMHDAKFNGFLSIMGALQFMET--DTLAIVGPQSAVMA 127 (953)
Q Consensus 51 ~IG~l~~~~-~~~g~~~~~a~~lAve~iN~~g~il~g~~l~l~~~D~~~~~~~a~~~a~~li~~--~v~aiiGp~~S~~a 127 (953)
+||++.+.. ......-..|++-|+++.+-. ..... +.....+...+.+.+.+++.. ++.||+.. +...+
T Consensus 129 ~i~~i~~~~~~~~~~~R~~gf~~~l~~~~~~------~~~~~-~~~~~~~~~~~~~~~~~~l~~~~~~~ai~~~-~d~~a 200 (289)
T 3g85_A 129 SAAAILTESLNDAMDNRNKGFIETCHKNGIK------ISENH-IIAAENSIHGGVDAAKKLMKLKNTPKALFCN-SDSIA 200 (289)
T ss_dssp BCEEEECCCSSHHHHHHHHHHHHHHHHTTCB------CCGGG-EEECCSSHHHHHHHHHHHTTSSSCCSEEEES-SHHHH
T ss_pred EEEEEeCCcccccHHHHHHHHHHHHHHcCCC------CChhh-eeccCCCHHHHHHHHHHHHcCCCCCcEEEEc-CCHHH
Confidence 466665443 222344567777777764211 11111 123455777888888888876 68999974 45556
Q ss_pred HHHHHhhhhCC--Cc----EEEeecCCCCCCCCCCCcEEEccCChHHHHHHHHHHHH
Q 002211 128 HVLSHLANELQ--VP----LLSFTALDPTLSPLQYPFFVQTAPNDLYLMSAIAEMVS 178 (953)
Q Consensus 128 ~av~~v~~~~~--vP----~Is~~at~~~ls~~~~p~~fr~~p~d~~~~~ai~~~l~ 178 (953)
..+...+.+.+ || ++++...+..+.....|-+-.+..+...++...++++.
T Consensus 201 ~g~~~al~~~g~~vP~di~vig~d~~~~~~~~~~~p~lttv~~~~~~~g~~a~~~l~ 257 (289)
T 3g85_A 201 LGVISVLNKRQISIPDDIEIVAIGMNDREYTEFSTPPVTIVDIPIEEMAGTCISLVE 257 (289)
T ss_dssp HHHHHHHHHTTCCTTTTCEEEEEECSCHHHHHSSSSCCEEEECCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCCCCCceEEEEeCCCCcchhhccCCCCeEEcCCHHHHHHHHHHHHH
Confidence 66666666665 34 77775212222222234444556666777777777754
No 464
>1k66_A Phytochrome response regulator RCPB; CHEY homologue, homodimer, APO-protein, (beta/alpha)5, signaling protein; 1.75A {Tolypothrix SP} SCOP: c.23.1.1
Probab=20.46 E-value=4e+02 Score=22.70 Aligned_cols=58 Identities=12% Similarity=-0.011 Sum_probs=36.8
Q ss_pred chHHHHHHHHHhcCc--EEEEEEecCCCCCCChHHHHHHHHHHhc----------CCceEEEEEcch--hhHHHHHHHHH
Q 002211 197 NGVTALGDKLAEIRC--KISYKSALPPDQSVTETDVRNELVKVRM----------MEARVIVVHGYS--RTGLMVFDVAQ 262 (953)
Q Consensus 197 ~~~~~l~~~l~~~g~--~v~~~~~~~~~~~~~~~d~~~~l~~i~~----------~~~~vii~~~~~--~~~~~~~~~a~ 262 (953)
.....+.+.+++.|. .+... .+....+..++. ..+|+|++.... .++..++++.+
T Consensus 17 ~~~~~l~~~L~~~g~~~~v~~~-----------~~~~~al~~l~~~~~~~~~~~~~~~dlvi~D~~l~~~~g~~~~~~l~ 85 (149)
T 1k66_A 17 EDFSTFQRLLQREGVVNPIYRC-----------ITGDQALDFLYQTGSYCNPDIAPRPAVILLDLNLPGTDGREVLQEIK 85 (149)
T ss_dssp HHHHHHHHHHHHTTBCSCEEEE-----------CSHHHHHHHHHTCCSSSCGGGCCCCSEEEECSCCSSSCHHHHHHHHT
T ss_pred HHHHHHHHHHHHcCCCceEEEE-----------CCHHHHHHHHHhcccccCcccCCCCcEEEEECCCCCCCHHHHHHHHH
Confidence 456677778888776 44321 123345556654 679999997553 45677888887
Q ss_pred HcC
Q 002211 263 RLG 265 (953)
Q Consensus 263 ~~g 265 (953)
+..
T Consensus 86 ~~~ 88 (149)
T 1k66_A 86 QDE 88 (149)
T ss_dssp TST
T ss_pred hCc
Confidence 643
No 465
>1qpz_A PURA, protein (purine nucleotide synthesis repressor); transcription regulation, DNA-binding, purine biosynthesis; HET: DNA HPA; 2.50A {Escherichia coli} SCOP: a.35.1.5 c.93.1.1 PDB: 1bdi_A* 1qp0_A* 1qp4_A* 1pnr_A* 1wet_A* 1zay_A* 1vpw_A* 2pue_A* 2puf_A* 2pug_A* 1bdh_A* 1qp7_A* 1qqa_A* 1qqb_A* 2puc_A* 2pua_A* 2pub_A* 2pud_A* 1jfs_A* 1jh9_A* ...
Probab=20.42 E-value=2.6e+02 Score=28.84 Aligned_cols=67 Identities=6% Similarity=-0.134 Sum_probs=48.4
Q ss_pred cCCcEEEEEEec--CccccchHHHHHHHHHhcCcEEEEEEecCCCCCCChHHHHHHHHHHhcCCceEEEEEcch
Q 002211 180 FGWGEVIAIFND--DDQGRNGVTALGDKLAEIRCKISYKSALPPDQSVTETDVRNELVKVRMMEARVIVVHGYS 251 (953)
Q Consensus 180 ~~w~~vaii~~d--~~~g~~~~~~l~~~l~~~g~~v~~~~~~~~~~~~~~~d~~~~l~~i~~~~~~vii~~~~~ 251 (953)
-.-+.|+++..+ +.|.......+.+++++.|..+.... .. .+.......++.+...+.|.||+....
T Consensus 56 ~~~~~Igvi~~~~~~~~~~~~~~gi~~~a~~~g~~~~~~~---~~--~~~~~~~~~~~~l~~~~vdgiI~~~~~ 124 (340)
T 1qpz_A 56 NHTKSIGLLATSSEAAYFAEIIEAVEKNCFQKGYTLILGN---AW--NNLEKQRAYLSMMAQKRVDGLLVMCSE 124 (340)
T ss_dssp TCCSEEEEEESCSCSHHHHHHHHHHHHHHHHTTCEEEEEE---CT--TCHHHHHHHHHHHHHTTCSEEEECCSC
T ss_pred CCCCEEEEEeCCCCChHHHHHHHHHHHHHHHcCCEEEEEe---CC--CCHHHHHHHHHHHHcCCCCEEEEeCCC
Confidence 344689999854 66777888999999999999876532 11 124455566888888899999987543
No 466
>3luy_A Probable chorismate mutase; structural genomics, APC38059, 3-phenylp PSI-2, protein structure initiative; HET: PPY; 2.00A {Bifidobacterium adolescentis}
Probab=20.35 E-value=2.2e+02 Score=29.59 Aligned_cols=84 Identities=10% Similarity=0.065 Sum_probs=55.8
Q ss_pred CCeEEEE--eCchHHHHHHHhh------CCCccceEeCCCHHHHHHHHHcCCcEEEEccc---------hhHHHHHhcCc
Q 002211 712 NDRVGYQ--VGSFAENYLIEEL------SIPKSRLVALGSPEEYAIALENRTVAAVVDER---------PYIDLFLSDHC 774 (953)
Q Consensus 712 ~~~ig~~--~~s~~~~~l~~~~------~~~~~~~~~~~~~~~~~~~l~~g~~~a~~~~~---------~~~~~~~~~~~ 774 (953)
..+|+++ .|+|.+.-..+.. +.+...++++.+.++.+++|.+|+ |.-+... ..++.+ .+..
T Consensus 6 ~~~VaylGp~GtfS~~Aa~~~~~~~~~f~~~~~~~~p~~s~~~vf~aV~~g~-d~gVVPIENS~eG~V~~tlDlL-~~~~ 83 (329)
T 3luy_A 6 ARKLFYLGPQGTFTHQAAVNAAQELARFEPQGFDLMPMDDVPQILDAAQHGD-GWGIVAWENNVEGYVVPNLDAL-IDAK 83 (329)
T ss_dssp CEEEEEESSTTSHHHHHHHHHHHHTGGGCTTCEEEEEESSHHHHHHHHHHTS-SEEEEEEEETTTEECHHHHHHH-HTCS
T ss_pred CcEEEEECCCCcHHHHHHHHHHHhccccCCCCceEEeCCCHHHHHHHHHcCC-CEEEEEEcccCCCchHHHHHHh-hccC
Confidence 3468886 5888766543321 113456789999999999999998 6555431 123333 3345
Q ss_pred ceEEeCCccccCccEEEecCCCc
Q 002211 775 QFSVRGQEFTKSGWGFAFPRDSP 797 (953)
Q Consensus 775 ~l~~~~~~~~~~~~~~~~~k~sp 797 (953)
++.++++.+.+...++...++..
T Consensus 84 ~l~I~gE~~l~I~h~Ll~~~g~~ 106 (329)
T 3luy_A 84 DLVGFARVGVNVEFDAYVAQGAD 106 (329)
T ss_dssp SCEEEEEEEEECCCEEEEETTCC
T ss_pred CcEEEEEEEEEeeeeeecCCCCC
Confidence 78999998877777877666643
No 467
>2qu7_A Putative transcriptional regulator; structural genomics, PSI-2, protein structure initiative; 2.30A {Staphylococcus saprophyticus subsp}
Probab=20.17 E-value=1.8e+02 Score=29.17 Aligned_cols=64 Identities=9% Similarity=0.079 Sum_probs=46.5
Q ss_pred cEEEEEEec-CccccchHHHHHHHHHhcCcEEEEEEecCCCCCCChHHHHHHHHHHhcCCceEEEEEcch
Q 002211 183 GEVIAIFND-DDQGRNGVTALGDKLAEIRCKISYKSALPPDQSVTETDVRNELVKVRMMEARVIVVHGYS 251 (953)
Q Consensus 183 ~~vaii~~d-~~~g~~~~~~l~~~l~~~g~~v~~~~~~~~~~~~~~~d~~~~l~~i~~~~~~vii~~~~~ 251 (953)
++|+++..+ ++|.......+.+++++.|..+.... .. .+...-...++.+.+.++|.||+....
T Consensus 9 ~~Igvi~~~~~~~~~~~~~gi~~~~~~~g~~~~~~~---~~--~~~~~~~~~~~~l~~~~vdgiI~~~~~ 73 (288)
T 2qu7_A 9 NIIAFIVPDQNPFFTEVLTEISHECQKHHLHVAVAS---SE--ENEDKQQDLIETFVSQNVSAIILVPVK 73 (288)
T ss_dssp EEEEEEESSCCHHHHHHHHHHHHHHGGGTCEEEEEE---CT--TCHHHHHHHHHHHHHTTEEEEEECCSS
T ss_pred CEEEEEECCCCchHHHHHHHHHHHHHHCCCEEEEEe---CC--CCHHHHHHHHHHHHHcCccEEEEecCC
Confidence 568888864 66777888999999999999876532 11 124445567888888899999987543
No 468
>2csu_A 457AA long hypothetical protein; structural genomics, PH0766, riken ST genomics/proteomics initiative, RSGI, NPPSFA; 2.20A {Pyrococcus horikoshii} SCOP: c.2.1.8 c.23.4.1 c.23.4.1
Probab=20.15 E-value=3.3e+02 Score=29.76 Aligned_cols=145 Identities=12% Similarity=0.022 Sum_probs=90.0
Q ss_pred CChHHHHHHHHHHHhcCcEEEE--ccCCh--h-----hHHHHHHhhhhCCCcEEEeecCCCCCCCCCCCcEEEccCChHH
Q 002211 98 FNGFLSIMGALQFMETDTLAIV--GPQSA--V-----MAHVLSHLANELQVPLLSFTALDPTLSPLQYPFFVQTAPNDLY 168 (953)
Q Consensus 98 ~~~~~a~~~a~~li~~~v~aii--Gp~~S--~-----~a~av~~v~~~~~vP~Is~~at~~~ls~~~~p~~fr~~p~d~~ 168 (953)
-.+..+...+.++++.++-+++ -..-+ . ....+...+++.++.+|.+.+. .+-+.....-.-..|..
T Consensus 72 vp~~~~~~~v~e~~~~Gi~~vv~~s~G~~e~g~~g~~~~~~l~~~a~~~g~~viGPnc~--Gv~~~~~~~~~~~~~~~-- 147 (457)
T 2csu_A 72 VPKRFVKDTLIQCGEKGVKGVVIITAGFGETGEEGKREEKELVEIAHKYGMRIIGPNCV--GIMNTHVDLNATFITVA-- 147 (457)
T ss_dssp SCHHHHHHHHHHHHHHTCCEEEECCCSSTTSCHHHHHHHHHHHHHHHHHTCEEECSSCC--EEEEGGGTEEEESSCCC--
T ss_pred cCHHHHHHHHHHHHHcCCCEEEEecCCCCccccccHHHHHHHHHHHHHcCCEEEcCCcc--eEEccCCCceeeecCCC--
Confidence 3566677777788887765443 21111 1 2556778889999999976543 22221101111222221
Q ss_pred HHHHHHHHHHHcCCcEEEEEEecCccccchHHHHHHHHHhcCcEEEEEEecCCCCCCChHHHHHHHHHHhc-CCceEEEE
Q 002211 169 LMSAIAEMVSYFGWGEVIAIFNDDDQGRNGVTALGDKLAEIRCKISYKSALPPDQSVTETDVRNELVKVRM-MEARVIVV 247 (953)
Q Consensus 169 ~~~ai~~~l~~~~w~~vaii~~d~~~g~~~~~~l~~~l~~~g~~v~~~~~~~~~~~~~~~d~~~~l~~i~~-~~~~vii~ 247 (953)
.. -+|++|.+... +...+.+.+.+.|+-+.....+-.. .+.++...|+-+.+ .++++|++
T Consensus 148 ----------~~--G~v~~vsqSG~----~~~~~~~~~~~~g~G~s~~vs~G~~---~~~~~~d~l~~~~~D~~t~~I~l 208 (457)
T 2csu_A 148 ----------KK--GNVAFISQSGA----LGAGIVYKTIKEDIGFSKFISVGNM---ADVDFAELMEYLADTEEDKAIAL 208 (457)
T ss_dssp ----------EE--CSEEEEESCHH----HHHHHHHHHHHTTCEESEEEECTTC---CSSCHHHHHHHHTTCSSCCEEEE
T ss_pred ----------CC--CCEEEEeCCHH----HHHHHHHHHHhcCCCeeEEEECCCc---CCCCHHHHHHHHhcCCCCCEEEE
Confidence 11 46899986554 3455666777788776655444332 24567788888865 58999999
Q ss_pred Ecch-hhHHHHHHHHHHcC
Q 002211 248 HGYS-RTGLMVFDVAQRLG 265 (953)
Q Consensus 248 ~~~~-~~~~~~~~~a~~~g 265 (953)
+..+ .+...+++.++...
T Consensus 209 ~~E~i~~~~~f~~~a~~~~ 227 (457)
T 2csu_A 209 YIEGVRNGKKFMEVAKRVT 227 (457)
T ss_dssp EESCCSCHHHHHHHHHHHH
T ss_pred EEecCCCHHHHHHHHHHhc
Confidence 9997 77889999988864
No 469
>1dz3_A Stage 0 sporulation protein A; response regulator, domain swapping; 1.65A {Bacillus stearothermophilus} SCOP: c.23.1.1 PDB: 1qmp_A*
Probab=20.10 E-value=3.6e+02 Score=22.54 Aligned_cols=58 Identities=10% Similarity=0.096 Sum_probs=36.5
Q ss_pred chHHHHHHHHHhc-CcEEEEEEecCCCCCCChHHHHHHHHHHhcCCceEEEEEcch--hhHHHHHHHHHHc
Q 002211 197 NGVTALGDKLAEI-RCKISYKSALPPDQSVTETDVRNELVKVRMMEARVIVVHGYS--RTGLMVFDVAQRL 264 (953)
Q Consensus 197 ~~~~~l~~~l~~~-g~~v~~~~~~~~~~~~~~~d~~~~l~~i~~~~~~vii~~~~~--~~~~~~~~~a~~~ 264 (953)
.....+...+++. |..++... .+....+..++...+|+|++.... .++..++++.++.
T Consensus 13 ~~~~~l~~~l~~~~~~~~~~~~----------~~~~~a~~~~~~~~~dlvllD~~l~~~~g~~~~~~l~~~ 73 (130)
T 1dz3_A 13 ELVSLLDEYISSQPDMEVIGTA----------YNGQDCLQMLEEKRPDILLLDIIMPHLDGLAVLERIRAG 73 (130)
T ss_dssp HHHHHHHHHHHTSTTEEEEEEE----------SSHHHHHHHHHHHCCSEEEEESCCSSSCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCCceEEEEe----------CCHHHHHHHHhcCCCCEEEEecCCCCCCHHHHHHHHHhc
Confidence 4566777778776 66654321 122344555555679999997653 4577788888774
No 470
>1duv_G Octase-1, ornithine transcarbamoylase; enzyme-inhibitor complex, transferase; HET: PSQ; 1.70A {Escherichia coli} SCOP: c.78.1.1 c.78.1.1 PDB: 1akm_A* 2otc_A*
Probab=20.02 E-value=7.4e+02 Score=25.62 Aligned_cols=133 Identities=17% Similarity=0.161 Sum_probs=80.4
Q ss_pred EEEeEEEecCCCchhHHHHHHHHHHHHHhcCCCCCCCcEEEEEEecCCCChHHHHHHHHHHHhc--CcEEEEccCChhhH
Q 002211 50 LNVGAIFSFGTVNGQVSRIAMKAAQDDINSDPRVLGGRKLSITMHDAKFNGFLSIMGALQFMET--DTLAIVGPQSAVMA 127 (953)
Q Consensus 50 i~IG~l~~~~~~~g~~~~~a~~lAve~iN~~g~il~g~~l~l~~~D~~~~~~~a~~~a~~li~~--~v~aiiGp~~S~~a 127 (953)
-.|+.+|--.+. ..+.+++.|+.++ +|..+.+...+++-.-.+.+.-+.+-++. .++++=++. .
T Consensus 45 k~la~lF~e~ST---RTR~SFE~A~~~L-------Gg~~i~l~~~~ss~~kgEsl~DTarvLs~~~D~IviR~~~-~--- 110 (333)
T 1duv_G 45 KNIALIFEKDST---RTRCSFEVAAYDQ-------GARVTYLGPSGSQIGHKESIKDTARVLGRMYDGIQYRGYG-Q--- 110 (333)
T ss_dssp CEEEEEESSCCS---HHHHHHHHHHHHT-------TCEEEEECSSSSCBTTTBCHHHHHHHHTTTCSEEEEECSC-H---
T ss_pred CEEEEEecCCCc---cHHHHHHHHHHHc-------CCeEEEECCccccCcCCCcHHHHHHHHHHhCCEEEEEcCC-c---
Confidence 468888876554 6789999999996 35555554444433333344555555555 455554653 2
Q ss_pred HHHHHhhhhCCCcEEEeecCCCCCCCCCCCcEEEccCChHHHHHHHHHH---HHH-cC--C--cEEEEEEecCccccchH
Q 002211 128 HVLSHLANELQVPLLSFTALDPTLSPLQYPFFVQTAPNDLYLMSAIAEM---VSY-FG--W--GEVIAIFNDDDQGRNGV 199 (953)
Q Consensus 128 ~av~~v~~~~~vP~Is~~at~~~ls~~~~p~~fr~~p~d~~~~~ai~~~---l~~-~~--w--~~vaii~~d~~~g~~~~ 199 (953)
.++..+++..+||+|.-. ++...| .++++++ .++ +| . .+|+++. |.. ....
T Consensus 111 ~~~~~lA~~~~vPVINa~------~~~~HP------------tQ~LaDl~Ti~e~~~g~~l~gl~ia~vG--D~~-~~va 169 (333)
T 1duv_G 111 EIVETLAEYASVPVWNGL------TNEFHP------------TQLLADLLTMQEHLPGKAFNEMTLVYAG--DAR-NNMG 169 (333)
T ss_dssp HHHHHHHHHHSSCEEESC------CSSCCH------------HHHHHHHHHHHHHSTTCCGGGCEEEEES--CTT-SHHH
T ss_pred hHHHHHHHhCCCCeEcCC------CCCCCc------------hHHHHHHHHHHHHhcCCCCCCcEEEEEC--CCc-cchH
Confidence 234455666689999732 122333 3566776 345 56 2 4555554 332 4678
Q ss_pred HHHHHHHHhcCcEEEEEE
Q 002211 200 TALGDKLAEIRCKISYKS 217 (953)
Q Consensus 200 ~~l~~~l~~~g~~v~~~~ 217 (953)
..+...+...|.+|....
T Consensus 170 ~Sl~~~~~~~G~~v~~~~ 187 (333)
T 1duv_G 170 NSMLEAAALTGLDLRLVA 187 (333)
T ss_dssp HHHHHHHHHHCCEEEEEC
T ss_pred HHHHHHHHHcCCEEEEEC
Confidence 888888888898877643
Done!