BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 002212
(953 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3B6U|A Chain A, Crystal Structure Of The Motor Domain Of Human Kinesin
Family Member 3b In Complex With Adp
pdb|3B6U|B Chain B, Crystal Structure Of The Motor Domain Of Human Kinesin
Family Member 3b In Complex With Adp
Length = 372
Score = 152 bits (383), Expect = 1e-36, Method: Compositional matrix adjust.
Identities = 83/146 (56%), Positives = 98/146 (67%), Gaps = 4/146 (2%)
Query: 1 MNRASSRSHSVFTCIIE-SKWESQGVTHHRFARLNLVDLAGSERQKSSGAEGERLKEATN 59
MN SSRSH++F IE S+ G H R +LNLVDLAGSERQ +GA+GERLKEAT
Sbjct: 221 MNEHSSRSHAIFVITIECSEVGLDGENHIRVGKLNLVDLAGSERQAKTGAQGERLKEATK 280
Query: 60 INKSLSTLGLVIMNLVSISNGKSLHVPYRDSKLTFLLQDSLGGNSKTIIIANIXXXXXXX 119
IN SLS LG VI LV +GKS H+PYRDSKLT LLQDSLGGN+KT+++AN+
Sbjct: 281 INLSLSALGNVISALV---DGKSTHIPYRDSKLTRLLQDSLGGNAKTVMVANVGPASYNV 337
Query: 120 XXXXXXXKFAQRAKFIKNNAIVNEDA 145
++A RAK IKN VNED
Sbjct: 338 EETLTTLRYANRAKNIKNKPRVNEDP 363
>pdb|2VVG|A Chain A, Crystal Structure Of The G.Intestinalis Kinesin 2 Gikin2a
Motor Domain
pdb|2VVG|B Chain B, Crystal Structure Of The G.Intestinalis Kinesin 2 Gikin2a
Motor Domain
Length = 350
Score = 132 bits (333), Expect = 7e-31, Method: Compositional matrix adjust.
Identities = 76/144 (52%), Positives = 87/144 (60%), Gaps = 4/144 (2%)
Query: 1 MNRASSRSHSVFTCIIESKWESQGVTHHRFARLNLVDLAGSERQKSSGAEGERLKEATNI 60
MN SSRSHS+F IE + R +LNLVDLAGSERQ +GA GE L E I
Sbjct: 205 MNDTSSRSHSIFMVRIECSEVIENKEVIRVGKLNLVDLAGSERQSKTGATGETLVEGAKI 264
Query: 61 NKSLSTLGLVIMNLVSISNGKSLHVPYRDSKLTFLLQDSLGGNSKTIIIANIXXXXXXXX 120
N SLS LGLVI LV + H+PYRDSKLT LLQDSLGGNSKT++ ANI
Sbjct: 265 NLSLSALGLVISKLVE----GATHIPYRDSKLTRLLQDSLGGNSKTLMCANISPASTNYD 320
Query: 121 XXXXXXKFAQRAKFIKNNAIVNED 144
++A RAK IKN +NED
Sbjct: 321 ETMSTLRYADRAKQIKNKPRINED 344
>pdb|3B6V|A Chain A, Crystal Structure Of The Motor Domain Of Human Kinesin
Family Member 3c In Complex With Adp
pdb|3B6V|B Chain B, Crystal Structure Of The Motor Domain Of Human Kinesin
Family Member 3c In Complex With Adp
Length = 395
Score = 125 bits (315), Expect = 8e-29, Method: Compositional matrix adjust.
Identities = 78/170 (45%), Positives = 95/170 (55%), Gaps = 28/170 (16%)
Query: 1 MNRASSRSHSVFTCIIE-SKWESQGVTHHRFARLNLVDLAGSERQKSSG---AEG----- 51
MN SSRSH++F +E S+ S G H R +LNLVDLAGSERQ +G A G
Sbjct: 221 MNEVSSRSHAIFIITVECSERGSDGQDHIRVGKLNLVDLAGSERQNKAGPNTAGGAATPS 280
Query: 52 ----------------ERLKEATNINKSLSTLGLVIMNLVSISNGKSLHVPYRDSKLTFL 95
ER KEA+ IN SLS LG VI +++ +S H+PYRDSKLT L
Sbjct: 281 SGGGGGGGGSGGGAGGERPKEASKINLSLSALGNVI---AALAGNRSTHIPYRDSKLTRL 337
Query: 96 LQDSLGGNSKTIIIANIXXXXXXXXXXXXXXKFAQRAKFIKNNAIVNEDA 145
LQDSLGGN+KTI++A + +FA RAK IKN VNED
Sbjct: 338 LQDSLGGNAKTIMVATLGPASHSYDESLSTLRFANRAKNIKNKPRVNEDP 387
>pdb|1GOJ|A Chain A, Structure Of A Fast Kinesin: Implications For Atpase
Mechanism And Interactions With Microtubules
Length = 355
Score = 124 bits (311), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 73/146 (50%), Positives = 90/146 (61%), Gaps = 5/146 (3%)
Query: 1 MNRASSRSHSVFTCIIESKWESQGVTHHRFARLNLVDLAGSERQKSSGAEGERLKEATNI 60
MN+ SSRSHS+F I K G + +L LVDLAGSE+ +GA G+ L+EA I
Sbjct: 201 MNQESSRSHSIFVITITQKNVETG--SAKSGQLFLVDLAGSEKVGKTGASGQTLEEAKKI 258
Query: 61 NKSLSTLGLVIMNLVSISNGKSLHVPYRDSKLTFLLQDSLGGNSKTIIIANIXXXXXXXX 120
NKSLS LG+VI L ++GKS HVPYRDSKLT +LQ+SLGGNS+T +I N
Sbjct: 259 NKSLSALGMVINAL---TDGKSSHVPYRDSKLTRILQESLGGNSRTTLIINCSPSSYNDA 315
Query: 121 XXXXXXKFAQRAKFIKNNAIVNEDAS 146
+F RAK IKN A VN + S
Sbjct: 316 ETLSTLRFGMRAKSIKNKAKVNAELS 341
>pdb|3GBJ|A Chain A, Crystal Structure Of The Motor Domain Of Kinesin Kif13b
Bound With Adp
pdb|3GBJ|B Chain B, Crystal Structure Of The Motor Domain Of Kinesin Kif13b
Bound With Adp
pdb|3GBJ|C Chain C, Crystal Structure Of The Motor Domain Of Kinesin Kif13b
Bound With Adp
Length = 354
Score = 122 bits (305), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 67/137 (48%), Positives = 86/137 (62%), Gaps = 4/137 (2%)
Query: 1 MNRASSRSHSVFTCIIESKWES--QGVTHHRFARLNLVDLAGSERQKSSGAEGERLKEAT 58
MN SSRSH+VF + G + + +L+LVDLAGSER +GA G+RLKE +
Sbjct: 212 MNEESSRSHAVFKITLTHTLYDVKSGTSGEKVGKLSLVDLAGSERATKTGAAGDRLKEGS 271
Query: 59 NINKSLSTLGLVIMNLVSISNGKSLH--VPYRDSKLTFLLQDSLGGNSKTIIIANIXXXX 116
NINKSL+TLGLVI L S GK+ + VPYRDS LT+LL+DSLGGNSKT ++A +
Sbjct: 272 NINKSLTTLGLVISALADQSAGKNKNKFVPYRDSVLTWLLKDSLGGNSKTAMVATVSPAA 331
Query: 117 XXXXXXXXXXKFAQRAK 133
++A RAK
Sbjct: 332 DNYDETLSTLRYADRAK 348
>pdb|1IA0|K Chain K, Kif1a Head-Microtubule Complex Structure In Atp-Form
pdb|2HXF|C Chain C, Kif1a Head-Microtubule Complex Structure In Amppnp-Form
pdb|2HXH|C Chain C, Kif1a Head-Microtubule Complex Structure In Adp-Form
Length = 394
Score = 119 bits (298), Expect = 7e-27, Method: Compositional matrix adjust.
Identities = 66/152 (43%), Positives = 91/152 (59%), Gaps = 10/152 (6%)
Query: 1 MNRASSRSHSVFTCIIESKWES--QGVTHHRFARLNLVDLAGSERQKSSGAEGERLKEAT 58
MN SSRSH+VF I K +T + ++++LVDLAGSER S+GA+G RLKE
Sbjct: 226 MNETSSRSHAVFNIIFTQKRHDAETNITTEKVSKISLVDLAGSERADSTGAKGTRLKEGA 285
Query: 59 NINKSLSTLGLVIMNLVSISNGKSL--------HVPYRDSKLTFLLQDSLGGNSKTIIIA 110
NINKSL+TLG VI L + +G + +PYRDS LT+LL+++LGGNS+T ++A
Sbjct: 286 NINKSLTTLGKVISALAEMDSGPNKNKKKKKTDFIPYRDSVLTWLLRENLGGNSRTAMVA 345
Query: 111 NIXXXXXXXXXXXXXXKFAQRAKFIKNNAIVN 142
+ ++A RAK I+N VN
Sbjct: 346 ALSPADINYDETLSTLRYADRAKQIRNTVSVN 377
>pdb|1I5S|A Chain A, Crystal Structure Of The Kif1a Motor Domain Complexed With
Mg-Adp
Length = 367
Score = 119 bits (297), Expect = 9e-27, Method: Compositional matrix adjust.
Identities = 66/152 (43%), Positives = 91/152 (59%), Gaps = 10/152 (6%)
Query: 1 MNRASSRSHSVFTCIIESKWES--QGVTHHRFARLNLVDLAGSERQKSSGAEGERLKEAT 58
MN SSRSH+VF I K +T + ++++LVDLAGSER S+GA+G RLKE
Sbjct: 210 MNETSSRSHAVFNIIFTQKRHDAETNITTEKVSKISLVDLAGSERADSTGAKGTRLKEGA 269
Query: 59 NINKSLSTLGLVIMNLVSISNGKSL--------HVPYRDSKLTFLLQDSLGGNSKTIIIA 110
NINKSL+TLG VI L + +G + +PYRDS LT+LL+++LGGNS+T ++A
Sbjct: 270 NINKSLTTLGKVISALAEMDSGPNKNKKKKKTDFIPYRDSVLTWLLRENLGGNSRTAMVA 329
Query: 111 NIXXXXXXXXXXXXXXKFAQRAKFIKNNAIVN 142
+ ++A RAK I+N VN
Sbjct: 330 ALSPADINYDETLSTLRYADRAKQIRNTVSVN 361
>pdb|1VFV|A Chain A, Crystal Structure Of The Kif1a Motor Domain Complexed With
Mg-Amppnp
pdb|1VFW|A Chain A, Crystal Structure Of The Kif1a Motor Domain Complexed With
Mg-Amppnp
pdb|1VFX|A Chain A, Crystal Structure Of The Kif1a Motor Domain Complexed With
Adp-mg-alfx
pdb|1VFZ|A Chain A, Crystal Structure Of The Kif1a Motor Domain Complexed With
Adp-Mg-Vo4
pdb|2ZFI|A Chain A, Crystal Structure Of The Kif1a Motor Domain Before Mg
Release
pdb|2ZFJ|A Chain A, Crystal Structure Of The Kif1a Motor Domain During Mg
Release: Mg-Releasing Transition-1
pdb|2ZFK|A Chain A, Crystal Structure Of The Kif1a Motor Domain During Mg
Release: Mg-Releasing Transition-2
pdb|2ZFL|A Chain A, Crystal Structure Of The Kif1a Motor Domain During Mg
Release: Mg-Releasing Transition-3
pdb|2ZFM|A Chain A, Crystal Structure Of The Kif1a Motor Domain After Mg
Release
Length = 366
Score = 119 bits (297), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 66/153 (43%), Positives = 91/153 (59%), Gaps = 10/153 (6%)
Query: 1 MNRASSRSHSVFTCIIESKWES--QGVTHHRFARLNLVDLAGSERQKSSGAEGERLKEAT 58
MN SSRSH+VF I K +T + ++++LVDLAGSER S+GA+G RLKE
Sbjct: 210 MNETSSRSHAVFNIIFTQKRHDAETNITTEKVSKISLVDLAGSERADSTGAKGTRLKEGA 269
Query: 59 NINKSLSTLGLVIMNLVSISNGKSL--------HVPYRDSKLTFLLQDSLGGNSKTIIIA 110
NINKSL+TLG VI L + +G + +PYRDS LT+LL+++LGGNS+T ++A
Sbjct: 270 NINKSLTTLGKVISALAEMDSGPNKNKKKKKTDFIPYRDSVLTWLLRENLGGNSRTAMVA 329
Query: 111 NIXXXXXXXXXXXXXXKFAQRAKFIKNNAIVNE 143
+ ++A RAK I+N VN
Sbjct: 330 ALSPADINYDETLSTLRYADRAKQIRNTVSVNH 362
>pdb|1I6I|A Chain A, Crystal Structure Of The Kif1a Motor Domain Complexed With
Mg-Amppcp
Length = 366
Score = 118 bits (296), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 66/153 (43%), Positives = 91/153 (59%), Gaps = 10/153 (6%)
Query: 1 MNRASSRSHSVFTCIIESKWES--QGVTHHRFARLNLVDLAGSERQKSSGAEGERLKEAT 58
MN SSRSH+VF I K +T + ++++LVDLAGSER S+GA+G RLKE
Sbjct: 210 MNETSSRSHAVFNIIFTQKRHDAETNITTEKVSKISLVDLAGSERADSTGAKGTRLKEGA 269
Query: 59 NINKSLSTLGLVIMNLVSISNGKSL--------HVPYRDSKLTFLLQDSLGGNSKTIIIA 110
NINKSL+TLG VI L + +G + +PYRDS LT+LL+++LGGNS+T ++A
Sbjct: 270 NINKSLTTLGKVISALAEMDSGPNKNKKKKKTDFIPYRDSVLTWLLRENLGGNSRTAMVA 329
Query: 111 NIXXXXXXXXXXXXXXKFAQRAKFIKNNAIVNE 143
+ ++A RAK I+N VN
Sbjct: 330 ALSPADINYDETLSTLRYADRAKQIRNTVSVNH 362
>pdb|3LRE|A Chain A, Crystal Structure Analysis Of Human Kinesin-8 Motor Domain
pdb|3LRE|B Chain B, Crystal Structure Analysis Of Human Kinesin-8 Motor Domain
Length = 355
Score = 116 bits (291), Expect = 5e-26, Method: Compositional matrix adjust.
Identities = 64/136 (47%), Positives = 88/136 (64%), Gaps = 2/136 (1%)
Query: 1 MNRASSRSHSVFTCIIESKWESQGVTHH-RFARLNLVDLAGSERQKSSGAEGERLKEATN 59
MN SSRSH+VF + + ++ + + R A+++L+DLAGSER +SGA+G R E TN
Sbjct: 221 MNATSSRSHAVFQIYLRQQDKTASINQNVRIAKMSLIDLAGSERASTSGAKGTRFVEGTN 280
Query: 60 INKSLSTLGLVIMNLVSISNGKSLHVPYRDSKLTFLLQDSLGGNSKTIIIANIXXXXXXX 119
IN+SL LG VI N ++ S K+ H+PYR+SKLT LL+DSLGGN +TI+IA +
Sbjct: 281 INRSLLALGNVI-NALADSKRKNQHIPYRNSKLTRLLKDSLGGNCQTIMIAAVSPSSVFY 339
Query: 120 XXXXXXXKFAQRAKFI 135
K+A RAK I
Sbjct: 340 DDTYNTLKYANRAKDI 355
>pdb|2Y5W|A Chain A, Crystal Structure Of Drosophila Melanogaster Kinesin-1
Motor Domain Dimer
pdb|2Y5W|B Chain B, Crystal Structure Of Drosophila Melanogaster Kinesin-1
Motor Domain Dimer
pdb|2Y65|A Chain A, Crystal Structure Of Drosophila Melanogaster Kinesin-1
Motor Domain Dimer-Tail Complex
pdb|2Y65|B Chain B, Crystal Structure Of Drosophila Melanogaster Kinesin-1
Motor Domain Dimer-Tail Complex
pdb|2Y65|C Chain C, Crystal Structure Of Drosophila Melanogaster Kinesin-1
Motor Domain Dimer-Tail Complex
pdb|2Y65|D Chain D, Crystal Structure Of Drosophila Melanogaster Kinesin-1
Motor Domain Dimer-Tail Complex
Length = 365
Score = 116 bits (290), Expect = 7e-26, Method: Compositional matrix adjust.
Identities = 74/168 (44%), Positives = 98/168 (58%), Gaps = 7/168 (4%)
Query: 1 MNRASSRSHSVFTCIIESKWESQGVTHHRFARLNLVDLAGSERQKSSGAEGERLKEATNI 60
MN SSRSHSVF +I K E+ +L LVDLAGSE+ +GAEG L EA NI
Sbjct: 204 MNEHSSRSHSVF--LINVKQENLENQKKLSGKLYLVDLAGSEKVSKTGAEGTVLDEAKNI 261
Query: 61 NKSLSTLGLVIMNLVSISNGKSLHVPYRDSKLTFLLQDSLGGNSKTIIIANIXXXXXXXX 120
NKSLS LG VI ++++G H+PYRDSKLT +LQ+SLGGN++T I+
Sbjct: 262 NKSLSALGNVIS---ALADGNKTHIPYRDSKLTRILQESLGGNARTTIVICCSPASFNES 318
Query: 121 XXXXXXKFAQRAKFIKNNAIVNEDASGDVIAMRMEIQQLKKEVSRLRG 168
F +RAK +KN VNE+ + + R E ++ K +RL+G
Sbjct: 319 ETKSTLDFGRRAKTVKNVVCVNEELTAEEWKRRYEKEKEKN--ARLKG 364
>pdb|2OWM|A Chain A, Motor Domain Of Neurospora Crassa Kinesin-3 (Nckin3)
pdb|2OWM|B Chain B, Motor Domain Of Neurospora Crassa Kinesin-3 (Nckin3)
pdb|2OWM|C Chain C, Motor Domain Of Neurospora Crassa Kinesin-3 (Nckin3)
pdb|2OWM|D Chain D, Motor Domain Of Neurospora Crassa Kinesin-3 (Nckin3)
Length = 443
Score = 114 bits (286), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 73/164 (44%), Positives = 95/164 (57%), Gaps = 24/164 (14%)
Query: 1 MNRASSRSHSVFTCI---IESKWESQGVTHHRFARLNLVDLAGSERQKSSGAEGERLKEA 57
MN SSRSH+VFT + I E+ T R +R+ LVDLAGSER KS+ A G+RL+E
Sbjct: 261 MNDTSSRSHAVFTIMLKQIHHDLETDDTTE-RSSRIRLVDLAGSERAKSTEATGQRLREG 319
Query: 58 TNINKSLSTLGLVIMNLV-----------SISNGKSLH-------VPYRDSKLTFLLQDS 99
+NINKSL+TLG VI L + +G+ VPYRDS LT+LL+DS
Sbjct: 320 SNINKSLTTLGRVIAALADPKSSASRPSSPVKSGRGRTPGPANSVVPYRDSVLTWLLKDS 379
Query: 100 LGGNSKTIIIANIXXXXXXXXXXXXXXKFAQRAKFIKNNAIVNE 143
LGGNSKT +IA I ++A +AK I+ A+VN+
Sbjct: 380 LGGNSKTAMIACI--SPTDYDETLSTLRYADQAKRIRTRAVVNQ 421
>pdb|1MKJ|A Chain A, Human Kinesin Motor Domain With Docked Neck Linker
Length = 349
Score = 114 bits (286), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 69/142 (48%), Positives = 80/142 (56%), Gaps = 6/142 (4%)
Query: 1 MNRASSRSHSVFTCIIESKWESQGVTHHRFARLNLVDLAGSERQKSSGAEGERLKEATNI 60
MN SSRSHS+F +I K E+ +L LVDLAGSE+ +GAEG L EA NI
Sbjct: 197 MNEHSSRSHSIF--LINVKQENTQTEQKLSGKLYLVDLAGSEKVSKTGAEGAVLDEAKNI 254
Query: 61 NKSLSTLGLVIMNLVSISNGKSLHVPYRDSKLTFLLQDSLGGNSKTIIIANIXXXXXXXX 120
NKSLS LG VI L S +VPYRDSK+T +LQDSLGGN +T I+
Sbjct: 255 NKSLSALGNVISALAE----GSTYVPYRDSKMTRILQDSLGGNCRTTIVICCSPSSYNES 310
Query: 121 XXXXXXKFAQRAKFIKNNAIVN 142
F QRAK IKN VN
Sbjct: 311 ETKSTLLFGQRAKTIKNTVCVN 332
>pdb|4ATX|C Chain C, Rigor Kinesin Motor Domain With An Ordered Neck-Linker,
Docked On Tubulin Dimer, Modelled Into The 8a Cryo-Em
Map Of Doublecortin-Microtubules Decorated With Kinesin
Length = 340
Score = 114 bits (286), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 69/142 (48%), Positives = 80/142 (56%), Gaps = 6/142 (4%)
Query: 1 MNRASSRSHSVFTCIIESKWESQGVTHHRFARLNLVDLAGSERQKSSGAEGERLKEATNI 60
MN SSRSHS+F +I K E+ +L LVDLAGSE+ +GAEG L EA NI
Sbjct: 197 MNEHSSRSHSIF--LINVKQENTQTEQKLSGKLYLVDLAGSEKVSKTGAEGAVLDEAKNI 254
Query: 61 NKSLSTLGLVIMNLVSISNGKSLHVPYRDSKLTFLLQDSLGGNSKTIIIANIXXXXXXXX 120
NKSLS LG VI L S +VPYRDSK+T +LQDSLGGN +T I+
Sbjct: 255 NKSLSALGNVISALAE----GSTYVPYRDSKMTRILQDSLGGNCRTTIVICCSPSSYNES 310
Query: 121 XXXXXXKFAQRAKFIKNNAIVN 142
F QRAK IKN VN
Sbjct: 311 ETKSTLLFGQRAKTIKNTVCVN 332
>pdb|4AP0|A Chain A, The Mitotic Kinesin Eg5 In Complex With Mg-Adp And
Ispinesib
pdb|4AP0|B Chain B, The Mitotic Kinesin Eg5 In Complex With Mg-Adp And
Ispinesib
pdb|4AP0|C Chain C, The Mitotic Kinesin Eg5 In Complex With Mg-Adp And
Ispinesib
pdb|4AP0|D Chain D, The Mitotic Kinesin Eg5 In Complex With Mg-Adp And
Ispinesib
Length = 370
Score = 113 bits (282), Expect = 6e-25, Method: Compositional matrix adjust.
Identities = 70/144 (48%), Positives = 86/144 (59%), Gaps = 5/144 (3%)
Query: 1 MNRASSRSHSVFTCIIESKWES-QGVTHHRFARLNLVDLAGSERQKSSGAEGERLKEATN 59
MN SSRSHSVF+ I K + G + +LNLVDLAGSE SGA +R +EA N
Sbjct: 230 MNAYSSRSHSVFSVTIHMKETTIDGEELVKIGKLNLVDLAGSENIGRSGAVDKRAREAGN 289
Query: 60 INKSLSTLGLVIMNLVSISNGKSLHVPYRDSKLTFLLQDSLGGNSKTIIIANIXXXXXXX 119
IN+SL TLG VI LV ++ HVPYR+SKLT +LQDSLGG ++T IIA I
Sbjct: 290 INQSLLTLGRVITALVE----RTPHVPYRESKLTRILQDSLGGRTRTSIIATISPASLNL 345
Query: 120 XXXXXXXKFAQRAKFIKNNAIVNE 143
++A RAK I N VN+
Sbjct: 346 EETLSTLEYAHRAKNILNKPEVNQ 369
>pdb|4AQV|C Chain C, Model Of Human Kinesin-5 Motor Domain (3hqd) And Mammalian
Tubulin Heterodimer (1jff) Docked Into The 9.7-angstrom
Cryo-em Map Of Microtubule-bound Kinesin-5 Motor Domain
In The Ampppnp State.
pdb|4AQW|C Chain C, Model Of Human Kinesin-5 Motor Domain (1ii6, 3hqd) And
Mammalian Tubulin Heterodimer (1jff) Docked Into The
9.5- Angstrom Cryo-em Map Of Microtubule-bound Kinesin-5
Motor Domain In The Rigor State
Length = 373
Score = 113 bits (282), Expect = 6e-25, Method: Compositional matrix adjust.
Identities = 70/144 (48%), Positives = 86/144 (59%), Gaps = 5/144 (3%)
Query: 1 MNRASSRSHSVFTCIIESKWES-QGVTHHRFARLNLVDLAGSERQKSSGAEGERLKEATN 59
MN SSRSHSVF+ I K + G + +LNLVDLAGSE SGA +R +EA N
Sbjct: 228 MNAYSSRSHSVFSVTIHMKETTIDGEELVKIGKLNLVDLAGSENIGRSGAVDKRAREAGN 287
Query: 60 INKSLSTLGLVIMNLVSISNGKSLHVPYRDSKLTFLLQDSLGGNSKTIIIANIXXXXXXX 119
IN+SL TLG VI LV ++ HVPYR+SKLT +LQDSLGG ++T IIA I
Sbjct: 288 INQSLLTLGRVITALVE----RTPHVPYRESKLTRILQDSLGGRTRTSIIATISPASLNL 343
Query: 120 XXXXXXXKFAQRAKFIKNNAIVNE 143
++A RAK I N VN+
Sbjct: 344 EETLSTLEYAHRAKNILNKPEVNQ 367
>pdb|1Q0B|A Chain A, Crystal Structure Of The Motor Protein Ksp In Complex With
Adp And Monastrol
pdb|1Q0B|B Chain B, Crystal Structure Of The Motor Protein Ksp In Complex With
Adp And Monastrol
pdb|2FKY|A Chain A, Crystal Structure Of Ksp In Complex With Inhibitor 13
pdb|2FKY|B Chain B, Crystal Structure Of Ksp In Complex With Inhibitor 13
pdb|2FL2|A Chain A, Crystal Structure Of Ksp In Complex With Inhibitor 19
pdb|2FL2|B Chain B, Crystal Structure Of Ksp In Complex With Inhibitor 19
pdb|2FL6|A Chain A, Crystal Structure Of Ksp In Complex With Inhibitor 6
pdb|2FL6|B Chain B, Crystal Structure Of Ksp In Complex With Inhibitor 6
pdb|2IEH|A Chain A, Crystal Structure Of Human Kinesin Eg5 In Complex With
(R)- Mon97, A New Monastrol-Based Inhibitor That Binds
As (R)- Enantiomer
pdb|2IEH|B Chain B, Crystal Structure Of Human Kinesin Eg5 In Complex With
(R)- Mon97, A New Monastrol-Based Inhibitor That Binds
As (R)- Enantiomer
pdb|2Q2Y|A Chain A, Crystal Structure Of Ksp In Complex With Inhibitor 1
pdb|2Q2Y|B Chain B, Crystal Structure Of Ksp In Complex With Inhibitor 1
pdb|2Q2Z|A Chain A, Crystal Structure Of Ksp In Complex With Inhibitor 22
pdb|2Q2Z|B Chain B, Crystal Structure Of Ksp In Complex With Inhibitor 22
pdb|3CJO|A Chain A, Crystal Structure Of Ksp In Complex With Inhibitor 30
pdb|3CJO|B Chain B, Crystal Structure Of Ksp In Complex With Inhibitor 30
Length = 367
Score = 113 bits (282), Expect = 6e-25, Method: Compositional matrix adjust.
Identities = 70/144 (48%), Positives = 86/144 (59%), Gaps = 5/144 (3%)
Query: 1 MNRASSRSHSVFTCIIESKWES-QGVTHHRFARLNLVDLAGSERQKSSGAEGERLKEATN 59
MN SSRSHSVF+ I K + G + +LNLVDLAGSE SGA +R +EA N
Sbjct: 227 MNAYSSRSHSVFSVTIHMKETTIDGEELVKIGKLNLVDLAGSENIGRSGAVDKRAREAGN 286
Query: 60 INKSLSTLGLVIMNLVSISNGKSLHVPYRDSKLTFLLQDSLGGNSKTIIIANIXXXXXXX 119
IN+SL TLG VI LV ++ HVPYR+SKLT +LQDSLGG ++T IIA I
Sbjct: 287 INQSLLTLGRVITALVE----RTPHVPYRESKLTRILQDSLGGRTRTSIIATISPASLNL 342
Query: 120 XXXXXXXKFAQRAKFIKNNAIVNE 143
++A RAK I N VN+
Sbjct: 343 EETLSTLEYAHRAKNILNKPEVNQ 366
>pdb|1X88|A Chain A, Human Eg5 Motor Domain Bound To Mg-Adp And Monastrol
pdb|1X88|B Chain B, Human Eg5 Motor Domain Bound To Mg-Adp And Monastrol
Length = 359
Score = 112 bits (281), Expect = 7e-25, Method: Compositional matrix adjust.
Identities = 70/144 (48%), Positives = 86/144 (59%), Gaps = 5/144 (3%)
Query: 1 MNRASSRSHSVFTCIIESKWES-QGVTHHRFARLNLVDLAGSERQKSSGAEGERLKEATN 59
MN SSRSHSVF+ I K + G + +LNLVDLAGSE SGA +R +EA N
Sbjct: 219 MNAYSSRSHSVFSVTIHMKETTIDGEELVKIGKLNLVDLAGSENIGRSGAVDKRAREAGN 278
Query: 60 INKSLSTLGLVIMNLVSISNGKSLHVPYRDSKLTFLLQDSLGGNSKTIIIANIXXXXXXX 119
IN+SL TLG VI LV ++ HVPYR+SKLT +LQDSLGG ++T IIA I
Sbjct: 279 INQSLLTLGRVITALVE----RTPHVPYRESKLTRILQDSLGGRTRTSIIATISPASLNL 334
Query: 120 XXXXXXXKFAQRAKFIKNNAIVNE 143
++A RAK I N VN+
Sbjct: 335 EETLSTLEYAHRAKNILNKPEVNQ 358
>pdb|4A28|A Chain A, Eg5-2
pdb|4A28|B Chain B, Eg5-2
Length = 368
Score = 112 bits (281), Expect = 7e-25, Method: Compositional matrix adjust.
Identities = 70/144 (48%), Positives = 86/144 (59%), Gaps = 5/144 (3%)
Query: 1 MNRASSRSHSVFTCIIESKWES-QGVTHHRFARLNLVDLAGSERQKSSGAEGERLKEATN 59
MN SSRSHSVF+ I K + G + +LNLVDLAGSE SGA +R +EA N
Sbjct: 228 MNAYSSRSHSVFSVTIHMKETTIDGEELVKIGKLNLVDLAGSENIGRSGAVDKRAREAGN 287
Query: 60 INKSLSTLGLVIMNLVSISNGKSLHVPYRDSKLTFLLQDSLGGNSKTIIIANIXXXXXXX 119
IN+SL TLG VI LV ++ HVPYR+SKLT +LQDSLGG ++T IIA I
Sbjct: 288 INQSLLTLGRVITALVE----RTPHVPYRESKLTRILQDSLGGRTRTSIIATISPASLNL 343
Query: 120 XXXXXXXKFAQRAKFIKNNAIVNE 143
++A RAK I N VN+
Sbjct: 344 EETLSTLEYAHRAKNILNKPEVNQ 367
>pdb|3HQD|A Chain A, Human Kinesin Eg5 Motor Domain In Complex With Amppnp And
Mg2+
pdb|3HQD|B Chain B, Human Kinesin Eg5 Motor Domain In Complex With Amppnp And
Mg2+
pdb|3KEN|A Chain A, Human Eg5 In Complex With S-Trityl-L-Cysteine
Length = 369
Score = 112 bits (281), Expect = 7e-25, Method: Compositional matrix adjust.
Identities = 70/144 (48%), Positives = 86/144 (59%), Gaps = 5/144 (3%)
Query: 1 MNRASSRSHSVFTCIIESKWES-QGVTHHRFARLNLVDLAGSERQKSSGAEGERLKEATN 59
MN SSRSHSVF+ I K + G + +LNLVDLAGSE SGA +R +EA N
Sbjct: 228 MNAYSSRSHSVFSVTIHMKETTIDGEELVKIGKLNLVDLAGSENIGRSGAVDKRAREAGN 287
Query: 60 INKSLSTLGLVIMNLVSISNGKSLHVPYRDSKLTFLLQDSLGGNSKTIIIANIXXXXXXX 119
IN+SL TLG VI LV ++ HVPYR+SKLT +LQDSLGG ++T IIA I
Sbjct: 288 INQSLLTLGRVITALVE----RTPHVPYRESKLTRILQDSLGGRTRTSIIATISPASLNL 343
Query: 120 XXXXXXXKFAQRAKFIKNNAIVNE 143
++A RAK I N VN+
Sbjct: 344 EETLSTLEYAHRAKNILNKPEVNQ 367
>pdb|1II6|A Chain A, Crystal Structure Of The Mitotic Kinesin Eg5 In Complex
With Mg-Adp.
pdb|1II6|B Chain B, Crystal Structure Of The Mitotic Kinesin Eg5 In Complex
With Mg-Adp.
pdb|1YRS|A Chain A, Crystal Structure Of Ksp In Complex With Inhibitor 1
pdb|1YRS|B Chain B, Crystal Structure Of Ksp In Complex With Inhibitor 1
pdb|2FME|A Chain A, Crystal Structure Of The Mitotic Kinesin Eg5 (ksp) In
Complex With Mg-adp And (r)-4-(3-hydroxyphenyl)-n,n,7,8-
Tetramethyl-3,4-dihydroisoquinoline-2(1h)-carboxamide
pdb|2FME|B Chain B, Crystal Structure Of The Mitotic Kinesin Eg5 (ksp) In
Complex With Mg-adp And (r)-4-(3-hydroxyphenyl)-n,n,7,8-
Tetramethyl-3,4-dihydroisoquinoline-2(1h)-carboxamide
pdb|2GM1|A Chain A, Crystal Structure Of The Mitotic Kinesin Eg5 In Complex
With Mg-Adp And
N-(3-Aminopropyl)-N-((3-Benzyl-5-Chloro-4-
Oxo-3,4-Dihydropyrrolo[2,1-F][1,2,4]triazin-2-Yl)
(Cyclopropyl)methyl)-4-Methylbenzamide
pdb|2GM1|B Chain B, Crystal Structure Of The Mitotic Kinesin Eg5 In Complex
With Mg-Adp And
N-(3-Aminopropyl)-N-((3-Benzyl-5-Chloro-4-
Oxo-3,4-Dihydropyrrolo[2,1-F][1,2,4]triazin-2-Yl)
(Cyclopropyl)methyl)-4-Methylbenzamide
pdb|2GM1|D Chain D, Crystal Structure Of The Mitotic Kinesin Eg5 In Complex
With Mg-Adp And
N-(3-Aminopropyl)-N-((3-Benzyl-5-Chloro-4-
Oxo-3,4-Dihydropyrrolo[2,1-F][1,2,4]triazin-2-Yl)
(Cyclopropyl)methyl)-4-Methylbenzamide
pdb|2GM1|E Chain E, Crystal Structure Of The Mitotic Kinesin Eg5 In Complex
With Mg-Adp And
N-(3-Aminopropyl)-N-((3-Benzyl-5-Chloro-4-
Oxo-3,4-Dihydropyrrolo[2,1-F][1,2,4]triazin-2-Yl)
(Cyclopropyl)methyl)-4-Methylbenzamide
pdb|2G1Q|A Chain A, Crystal Structure Of Ksp In Complex With Inhibitor 9h
pdb|2G1Q|B Chain B, Crystal Structure Of Ksp In Complex With Inhibitor 9h
pdb|2PG2|A Chain A, Crystal Structure Of Ksp In Complex With Adp And Thiophene
Containing Inhibitor 15
pdb|2PG2|B Chain B, Crystal Structure Of Ksp In Complex With Adp And Thiophene
Containing Inhibitor 15
pdb|2UYI|A Chain A, Crystal Structure Of Ksp In Complex With Adp And Thiophene
Containing Inhibitor 33
pdb|2UYI|B Chain B, Crystal Structure Of Ksp In Complex With Adp And Thiophene
Containing Inhibitor 33
pdb|2UYM|A Chain A, Crystal Structure Of Ksp In Complex With Adp And Thiophene
Containing Inhibitor 37
pdb|2UYM|B Chain B, Crystal Structure Of Ksp In Complex With Adp And Thiophene
Containing Inhibitor 37
pdb|3K5E|A Chain A, The Structure Of Human Kinesin-Like Motor Protein
Kif11KSPEG5 IN COMPLEX WITH ADP AND ENASTROL.
pdb|3K5E|B Chain B, The Structure Of Human Kinesin-Like Motor Protein
Kif11KSPEG5 IN COMPLEX WITH ADP AND ENASTROL.
pdb|3K3B|A Chain A, Co-crystal Structure Of The Human Kinesin Eg5 With A Novel
Tetrahydro- Beta-carboline
pdb|3K3B|B Chain B, Co-crystal Structure Of The Human Kinesin Eg5 With A Novel
Tetrahydro- Beta-carboline
pdb|3L9H|A Chain A, X-Ray Structure Of Mitotic Kinesin-5 (Ksp, Kif11, Eg5)in
Complex With The Hexahydro-2h-Pyrano[3,2-C]quinoline Emd
534085
pdb|3L9H|B Chain B, X-Ray Structure Of Mitotic Kinesin-5 (Ksp, Kif11, Eg5)in
Complex With The Hexahydro-2h-Pyrano[3,2-C]quinoline Emd
534085
pdb|2X7C|A Chain A, Crystal Structure Of Human Kinesin Eg5 In Complex With
(S)-Enastron
pdb|2X7C|B Chain B, Crystal Structure Of Human Kinesin Eg5 In Complex With
(S)-Enastron
pdb|2X7D|A Chain A, Crystal Structure Of Human Kinesin Eg5 In Complex With
(S)-Dimethylenastron
pdb|2X7D|B Chain B, Crystal Structure Of Human Kinesin Eg5 In Complex With
(S)-Dimethylenastron
pdb|2X7E|A Chain A, Crystal Structure Of Human Kinesin Eg5 In Complex With
(R)-Fluorastrol
pdb|2X7E|B Chain B, Crystal Structure Of Human Kinesin Eg5 In Complex With
(R)-Fluorastrol
pdb|2WOG|A Chain A, Intermediate And Final States Of Human Kinesin Eg5 In
Complex With S-Trityl-L-Cysteine
pdb|2WOG|B Chain B, Intermediate And Final States Of Human Kinesin Eg5 In
Complex With S-Trityl-L-Cysteine
pdb|2WOG|C Chain C, Intermediate And Final States Of Human Kinesin Eg5 In
Complex With S-Trityl-L-Cysteine
pdb|2X2R|A Chain A, Crystal Structure Of Human Kinesin Eg5 In Complex With
(R)-2-Amino-3-((4-
Chlorophenyl)diphenylmethylthio)propanoic Acid
pdb|2X2R|B Chain B, Crystal Structure Of Human Kinesin Eg5 In Complex With
(R)-2-Amino-3-((4-
Chlorophenyl)diphenylmethylthio)propanoic Acid
pdb|2X2R|C Chain C, Crystal Structure Of Human Kinesin Eg5 In Complex With
(R)-2-Amino-3-((4-
Chlorophenyl)diphenylmethylthio)propanoic Acid
pdb|2XAE|A Chain A, Crystal Structure Of Human Kinesin Eg5 In Complex With
(R)-2-Amino-3-((S)-2-Methyl-1,
1-Diphenylbutylthio)propanoic Acid
pdb|2XAE|B Chain B, Crystal Structure Of Human Kinesin Eg5 In Complex With
(R)-2-Amino-3-((S)-2-Methyl-1,
1-Diphenylbutylthio)propanoic Acid
pdb|2XAE|C Chain C, Crystal Structure Of Human Kinesin Eg5 In Complex With
(R)-2-Amino-3-((S)-2-Methyl-1,
1-Diphenylbutylthio)propanoic Acid
pdb|4A50|A Chain A, Crystal Structure Of Human Kinesin Eg5 In Complex With
2-amino-5-(3-methylphenyl)-5,5-diphenylpentanoic Acid
pdb|4A51|A Chain A, Crystal Structure Of Human Kinesin Eg5 In Complex With
1-(3-(((2-aminoethyl)thio)diphenylmethyl)phenyl)ethanone
Hydrochloride
pdb|4A51|B Chain B, Crystal Structure Of Human Kinesin Eg5 In Complex With
1-(3-(((2-aminoethyl)thio)diphenylmethyl)phenyl)ethanone
Hydrochloride
pdb|4A51|C Chain C, Crystal Structure Of Human Kinesin Eg5 In Complex With
1-(3-(((2-aminoethyl)thio)diphenylmethyl)phenyl)ethanone
Hydrochloride
pdb|4A51|D Chain D, Crystal Structure Of Human Kinesin Eg5 In Complex With
1-(3-(((2-aminoethyl)thio)diphenylmethyl)phenyl)ethanone
Hydrochloride
pdb|4A51|E Chain E, Crystal Structure Of Human Kinesin Eg5 In Complex With
1-(3-(((2-aminoethyl)thio)diphenylmethyl)phenyl)ethanone
Hydrochloride
pdb|4A51|F Chain F, Crystal Structure Of Human Kinesin Eg5 In Complex With
1-(3-(((2-aminoethyl)thio)diphenylmethyl)phenyl)ethanone
Hydrochloride
pdb|4A51|G Chain G, Crystal Structure Of Human Kinesin Eg5 In Complex With
1-(3-(((2-aminoethyl)thio)diphenylmethyl)phenyl)ethanone
Hydrochloride
pdb|4A5Y|A Chain A, Eg5-Inhibitor Complex
pdb|4A5Y|B Chain B, Eg5-Inhibitor Complex
pdb|4A5Y|C Chain C, Eg5-Inhibitor Complex
Length = 368
Score = 112 bits (281), Expect = 7e-25, Method: Compositional matrix adjust.
Identities = 70/144 (48%), Positives = 86/144 (59%), Gaps = 5/144 (3%)
Query: 1 MNRASSRSHSVFTCIIESKWES-QGVTHHRFARLNLVDLAGSERQKSSGAEGERLKEATN 59
MN SSRSHSVF+ I K + G + +LNLVDLAGSE SGA +R +EA N
Sbjct: 228 MNAYSSRSHSVFSVTIHMKETTIDGEELVKIGKLNLVDLAGSENIGRSGAVDKRAREAGN 287
Query: 60 INKSLSTLGLVIMNLVSISNGKSLHVPYRDSKLTFLLQDSLGGNSKTIIIANIXXXXXXX 119
IN+SL TLG VI LV ++ HVPYR+SKLT +LQDSLGG ++T IIA I
Sbjct: 288 INQSLLTLGRVITALVE----RTPHVPYRESKLTRILQDSLGGRTRTSIIATISPASLNL 343
Query: 120 XXXXXXXKFAQRAKFIKNNAIVNE 143
++A RAK I N VN+
Sbjct: 344 EETLSTLEYAHRAKNILNKPEVNQ 367
>pdb|4A1Z|A Chain A, Eg5-1
pdb|4A1Z|B Chain B, Eg5-1
Length = 368
Score = 112 bits (281), Expect = 8e-25, Method: Compositional matrix adjust.
Identities = 70/144 (48%), Positives = 86/144 (59%), Gaps = 5/144 (3%)
Query: 1 MNRASSRSHSVFTCIIESKWES-QGVTHHRFARLNLVDLAGSERQKSSGAEGERLKEATN 59
MN SSRSHSVF+ I K + G + +LNLVDLAGSE SGA +R +EA N
Sbjct: 228 MNAYSSRSHSVFSVTIHMKETTIDGEELVKIGKLNLVDLAGSENIGRSGAVDKRAREAGN 287
Query: 60 INKSLSTLGLVIMNLVSISNGKSLHVPYRDSKLTFLLQDSLGGNSKTIIIANIXXXXXXX 119
IN+SL TLG VI LV ++ HVPYR+SKLT +LQDSLGG ++T IIA I
Sbjct: 288 INQSLLTLGRVITALVE----RTPHVPYRESKLTRILQDSLGGRTRTSIIATISPASLNL 343
Query: 120 XXXXXXXKFAQRAKFIKNNAIVNE 143
++A RAK I N VN+
Sbjct: 344 EETLSTLEYAHRAKNILNKPEVNQ 367
>pdb|3ZCW|A Chain A, Eg5 - New Allosteric Binding Site
Length = 348
Score = 110 bits (274), Expect = 5e-24, Method: Compositional matrix adjust.
Identities = 68/138 (49%), Positives = 83/138 (60%), Gaps = 5/138 (3%)
Query: 1 MNRASSRSHSVFTCIIESKWES-QGVTHHRFARLNLVDLAGSERQKSSGAEGERLKEATN 59
MN SSRSHSVF+ I K + G + +LNLVDLAGSE SGA +R +EA N
Sbjct: 213 MNAYSSRSHSVFSVTIHMKETTIDGEELVKIGKLNLVDLAGSENIGRSGAVDKRAREAGN 272
Query: 60 INKSLSTLGLVIMNLVSISNGKSLHVPYRDSKLTFLLQDSLGGNSKTIIIANIXXXXXXX 119
IN+SL TLG VI LV ++ HVPYR+SKLT +LQDSLGG ++T IIA I
Sbjct: 273 INQSLLTLGRVITALVE----RTPHVPYRESKLTRILQDSLGGRTRTSIIATISPASLNL 328
Query: 120 XXXXXXXKFAQRAKFIKN 137
++A RAK I N
Sbjct: 329 EETLSTLEYAHRAKNILN 346
>pdb|2WBE|C Chain C, Kinesin-5-Tubulin Complex With Amppnp
Length = 373
Score = 110 bits (274), Expect = 5e-24, Method: Compositional matrix adjust.
Identities = 67/145 (46%), Positives = 88/145 (60%), Gaps = 6/145 (4%)
Query: 1 MNRASSRSHSVFTCIIESKWES-QGVTHHRFARLNLVDLAGSERQKSSGAE-GERLKEAT 58
MN SSRSH+VF+ ++ + +G + +LNLVDLAGSE +G E G R++E
Sbjct: 229 MNAQSSRSHTVFSIVVHIRENGIEGEDMLKIGKLNLVDLAGSENVSKAGNEKGIRVRETV 288
Query: 59 NINKSLSTLGLVIMNLVSISNGKSLHVPYRDSKLTFLLQDSLGGNSKTIIIANIXXXXXX 118
NIN+SL TLG VI LV ++ HVPYR+SKLT LLQ+SLGG +KT IIA I
Sbjct: 289 NINQSLLTLGRVITALVD----RAPHVPYRESKLTRLLQESLGGRTKTSIIATISPGHKD 344
Query: 119 XXXXXXXXKFAQRAKFIKNNAIVNE 143
++A RAK I+N VN+
Sbjct: 345 IEETLSTLEYAHRAKNIQNKPEVNQ 369
>pdb|1SDM|A Chain A, Crystal Structure Of Kinesin-Like Calmodulin Binding
Protein
pdb|3CNZ|A Chain A, Structural Dynamics Of The Microtubule Binding And
Regulatory Elements In The Kinesin-Like Calmodulin
Binding Protein
pdb|3CNZ|B Chain B, Structural Dynamics Of The Microtubule Binding And
Regulatory Elements In The Kinesin-Like Calmodulin
Binding Protein
pdb|3COB|A Chain A, Structural Dynamics Of The Microtubule Binding And
Regulatory Elements In The Kinesin-Like Calmodulin
Binding Protein
pdb|3COB|C Chain C, Structural Dynamics Of The Microtubule Binding And
Regulatory Elements In The Kinesin-Like Calmodulin
Binding Protein
Length = 369
Score = 109 bits (273), Expect = 6e-24, Method: Compositional matrix adjust.
Identities = 72/165 (43%), Positives = 97/165 (58%), Gaps = 16/165 (9%)
Query: 1 MNRASSRSHSVFTCIIES-KWESQGVTHHRFARLNLVDLAGSERQKSSGAEGERLKEATN 59
MN SSRSH + + IIES ++Q + +L+ VDLAGSER K SG+ G +LKEA +
Sbjct: 199 MNEQSSRSHLIVSVIIESTNLQTQAIAR---GKLSFVDLAGSERVKKSGSAGNQLKEAQS 255
Query: 60 INKSLSTLGLVIMNLVSISNGKSLHVPYRDSKLTFLLQDSLGGNSKTIIIANIXXXXXXX 119
INKSLS LG VI ++S+G H+PYR+ KLT L+ DSLGGN+KT++ NI
Sbjct: 256 INKSLSALGDVIS---ALSSGNQ-HIPYRNHKLTMLMSDSLGGNAKTLMFVNISPAESNL 311
Query: 120 XXXXXXXKFAQRAKFIKNNAIVNEDASGDVIAMRMEIQQLKKEVS 164
+A R + I N D S +V + E+ +LKK VS
Sbjct: 312 DETHNSLTYASRVRSIVN------DPSKNVSS--KEVARLKKLVS 348
>pdb|1T5C|A Chain A, Crystal Structure Of The Motor Domain Of Human Kinetochore
Protein Cenp-E
pdb|1T5C|B Chain B, Crystal Structure Of The Motor Domain Of Human Kinetochore
Protein Cenp-E
Length = 349
Score = 109 bits (272), Expect = 8e-24, Method: Compositional matrix adjust.
Identities = 69/147 (46%), Positives = 89/147 (60%), Gaps = 9/147 (6%)
Query: 1 MNRASSRSHSVFTCIIESKWESQGVTHH---RFARLNLVDLAGSERQKSSGAEGERLKEA 57
MN+ SSRSH++F I+ES+ + + + + LNLVDLAGSER +GA G RLKE
Sbjct: 195 MNQRSSRSHTIFRMILESREKGEPSNCEGSVKVSHLNLVDLAGSERAAQTGAAGVRLKEG 254
Query: 58 TNINKSLSTLGLVIMNLVSISNGK-SLHVPYRDSKLTFLLQDSLGGNSKTIIIANIXXXX 116
NIN+SL LG VI L S+G+ + YRDSKLT +LQ+SLGGN+KT II I
Sbjct: 255 CNINRSLFILGQVIKKL---SDGQVGGFINYRDSKLTRILQNSLGGNAKTRIICTI--TP 309
Query: 117 XXXXXXXXXXKFAQRAKFIKNNAIVNE 143
+FA AK++KN VNE
Sbjct: 310 VSFDETLTALQFASTAKYMKNTPYVNE 336
>pdb|2H58|A Chain A, Crystal Structure Of The Kifc3 Motor Domain In Complex
With Adp
Length = 330
Score = 108 bits (269), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 62/135 (45%), Positives = 82/135 (60%), Gaps = 6/135 (4%)
Query: 1 MNRASSRSHSVFTCIIESKWESQGVTHHRFARLNLVDLAGSERQKSSGAEGERLKEATNI 60
+N SSRSH++ + S G+ +LNLVDLAGSER SGAEG RL+EA +I
Sbjct: 200 LNEHSSRSHALLIVTVRGVDCSTGL--RTTGKLNLVDLAGSERVGKSGAEGSRLREAQHI 257
Query: 61 NKSLSTLGLVIMNLVSISNGKSLHVPYRDSKLTFLLQDSLGGNSKTIIIANIXXXXXXXX 120
NKSLS LG VI L S + HVP+R+SKLT+LLQDSL G+SKT+++ +
Sbjct: 258 NKSLSALGDVIAALRS----RQGHVPFRNSKLTYLLQDSLSGDSKTLMVVQVSPVEKNTS 313
Query: 121 XXXXXXKFAQRAKFI 135
KFA+R + +
Sbjct: 314 ETLYSLKFAERVRSV 328
>pdb|4H1G|A Chain A, Structure Of Candida Albicans Kar3 Motor Domain Fused To
Maltose- Binding Protein
Length = 715
Score = 107 bits (266), Expect = 4e-23, Method: Compositional matrix adjust.
Identities = 66/142 (46%), Positives = 87/142 (61%), Gaps = 9/142 (6%)
Query: 2 NRASSRSHSVFTCIIESKWESQGVTHHRFARLNLVDLAGSERQKSSGAEGERLKEATNIN 61
N SSRSHS+F II+ + + + LNL+DLAGSER +S AEG+RLKE IN
Sbjct: 583 NDHSSRSHSIF--IIDLQGYNSLTKESSYGTLNLIDLAGSERLNNSRAEGDRLKETQAIN 640
Query: 62 KSLSTLGLVIMNLVSISNGKSLHVPYRDSKLTFLLQDSLGGNSKTIIIANIXXXXXXXXX 121
KSLS LG VI +L ++ +G HVPYR+SKLT+LL+ SLGGNSKT++ NI
Sbjct: 641 KSLSCLGDVIHSL-NLKDGS--HVPYRNSKLTYLLKHSLGGNSKTLMFVNISPLTKDLNE 697
Query: 122 XXXXXKFAQRAKFIKNNAIVNE 143
+FA + NN +N+
Sbjct: 698 TINSLRFATKV----NNTRINK 715
>pdb|1BG2|A Chain A, Human Ubiquitous Kinesin Motor Domain
pdb|2P4N|K Chain K, Human Monomeric Kinesin (1bg2) And Bovine Tubulin (1jff)
Docked Into The 9-Angstrom Cryo-Em Map Of
Nucleotide-Free Kinesin Complexed To The Microtubule
Length = 325
Score = 106 bits (265), Expect = 5e-23, Method: Compositional matrix adjust.
Identities = 65/135 (48%), Positives = 76/135 (56%), Gaps = 6/135 (4%)
Query: 1 MNRASSRSHSVFTCIIESKWESQGVTHHRFARLNLVDLAGSERQKSSGAEGERLKEATNI 60
MN SSRSHS+F +I K E+ +L LVDLAGSE+ +GAEG L EA NI
Sbjct: 197 MNEHSSRSHSIF--LINVKQENTQTEQKLSGKLYLVDLAGSEKVSKTGAEGAVLDEAKNI 254
Query: 61 NKSLSTLGLVIMNLVSISNGKSLHVPYRDSKLTFLLQDSLGGNSKTIIIANIXXXXXXXX 120
NKSLS LG VI L S +VPYRDSK+T +LQDSLGGN +T I+
Sbjct: 255 NKSLSALGNVISALAE----GSTYVPYRDSKMTRILQDSLGGNCRTTIVICCSPSSYNES 310
Query: 121 XXXXXXKFAQRAKFI 135
F QRAK I
Sbjct: 311 ETKSTLLFGQRAKTI 325
>pdb|3H4S|A Chain A, Structure Of The Complex Of A Mitotic Kinesin With Its
Calcium Binding Regulator
Length = 386
Score = 105 bits (262), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 61/140 (43%), Positives = 84/140 (60%), Gaps = 8/140 (5%)
Query: 1 MNRASSRSHSVFTCIIES-KWESQGVTHHRFARLNLVDLAGSERQKSSGAEGERLKEATN 59
MN SSRSH + + +IES ++Q +L+ VDLAGSER K SG+ G +LKEA +
Sbjct: 207 MNEESSRSHLILSVVIESIDLQTQSAAR---GKLSFVDLAGSERVKKSGSAGNQLKEAQS 263
Query: 60 INKSLSTLGLVIMNLVSISNGKSLHVPYRDSKLTFLLQDSLGGNSKTIIIANIXXXXXXX 119
INKSLS LG VI ++S+G H+PYR+ KLT L+ DSLGGN+KT++ N+
Sbjct: 264 INKSLSALGDVIG---ALSSGNQ-HIPYRNHKLTMLMSDSLGGNAKTLMFVNVSPAESNL 319
Query: 120 XXXXXXXKFAQRAKFIKNNA 139
+A R + I N+
Sbjct: 320 DETYNSLLYASRVRTIVNDP 339
>pdb|3T0Q|A Chain A, Motor Domain Structure Of The Kar3-Like Kinesin From
Ashbya Gossypii
Length = 349
Score = 104 bits (259), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 64/135 (47%), Positives = 78/135 (57%), Gaps = 3/135 (2%)
Query: 2 NRASSRSHSVFTCIIESKWESQGVTHHRFARLNLVDLAGSERQKSSGAEGERLKEATNIN 61
N SSRSHSVF I + G T +LNLVDLAGSER SS GERL+E NIN
Sbjct: 214 NERSSRSHSVFMVHINGRNLHTGETSQ--GKLNLVDLAGSERINSSAVTGERLRETQNIN 271
Query: 62 KSLSTLGLVIMNLVSISNGKSLHVPYRDSKLTFLLQDSLGGNSKTIIIANIXXXXXXXXX 121
KSLS LG VI L + GK ++P+R+SKLT+LLQ SL G+SKT++ NI
Sbjct: 272 KSLSCLGDVIYALNTPDAGKR-YIPFRNSKLTYLLQYSLVGDSKTLMFVNIPPDPNHISE 330
Query: 122 XXXXXKFAQRAKFIK 136
+FA + K
Sbjct: 331 TLNSLRFASKVNSTK 345
>pdb|3NWN|A Chain A, Crystal Structure Of The Human Kif9 Motor Domain In
Complex With Adp
Length = 359
Score = 103 bits (256), Expect = 6e-22, Method: Compositional matrix adjust.
Identities = 57/135 (42%), Positives = 80/135 (59%), Gaps = 3/135 (2%)
Query: 1 MNRASSRSHSVFTCIIESKWESQGVTHHRFARLNLVDLAGSERQKSSGAEGERLKEATNI 60
MN+ SSRSH +FT +E+ + + +++NLVDLAGSER SG+EG+ LKEAT I
Sbjct: 228 MNKNSSRSHCIFTIYLEAHSRTLSEEKYITSKINLVDLAGSERLGKSGSEGQVLKEATYI 287
Query: 61 NKSLSTLGLVIMNLVSISNGKSLHVPYRDSKLTFLLQDSLGGNSKTIIIANIXXXXXXXX 120
NKSLS L I +++ + K H+P+R KLT L+DSLGGN +++ NI
Sbjct: 288 NKSLSFLEQAI---IALGDQKRDHIPFRQCKLTHALKDSLGGNCNMVLVTNIYGEAAQLE 344
Query: 121 XXXXXXKFAQRAKFI 135
+FA R K +
Sbjct: 345 ETLSSLRFASRMKLV 359
>pdb|4GKR|A Chain A, Structure Of The C-Terminal Motor Domain Of Kar3 From
Candida Glabrata
pdb|4GKR|B Chain B, Structure Of The C-Terminal Motor Domain Of Kar3 From
Candida Glabrata
Length = 371
Score = 102 bits (254), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 66/140 (47%), Positives = 82/140 (58%), Gaps = 13/140 (9%)
Query: 2 NRASSRSHSVFTCIIESKWE-----SQGVTHHRFARLNLVDLAGSERQKSSGAEGERLKE 56
N SSRSHS+F +E K E SQG+ LNLVDLAGSER SS GERL+E
Sbjct: 235 NEHSSRSHSIFIIHLEGKNEGTGEKSQGI-------LNLVDLAGSERLNSSMVVGERLRE 287
Query: 57 ATNINKSLSTLGLVIMNLVSISNGKSLHVPYRDSKLTFLLQDSLGGNSKTIIIANIXXXX 116
+INKSLS LG VI L S +G+ H+P+R+SKLT+LLQ SL G+SKT++ NI
Sbjct: 288 TQSINKSLSCLGDVIHALNS-PDGQKRHIPFRNSKLTYLLQYSLIGSSKTLMFVNISPAA 346
Query: 117 XXXXXXXXXXKFAQRAKFIK 136
+FA + K
Sbjct: 347 LHLNETINSLRFASKVNNTK 366
>pdb|4ETP|A Chain A, C-Terminal Motor And Motor Homology Domain Of Kar3vik1
Fused To A Synthetic Heterodimeric Coiled Coil
Length = 403
Score = 100 bits (250), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 59/131 (45%), Positives = 74/131 (56%), Gaps = 3/131 (2%)
Query: 2 NRASSRSHSVFTCIIESKWESQGVTHHRFARLNLVDLAGSERQKSSGAEGERLKEATNIN 61
N SSRSHS+F + G H + LNLVDLAGSER S G+RL+E NIN
Sbjct: 267 NEHSSRSHSIFIIHLSGSNAKTGA--HSYGTLNLVDLAGSERINVSQVVGDRLRETQNIN 324
Query: 62 KSLSTLGLVIMNLVSISNGKSLHVPYRDSKLTFLLQDSLGGNSKTIIIANIXXXXXXXXX 121
KSLS LG VI L + K H+P+R+SKLT+LLQ SL G+SKT++ NI
Sbjct: 325 KSLSALGDVIHALGQPDSTKR-HIPFRNSKLTYLLQYSLTGDSKTLMFVNISPSSSHINE 383
Query: 122 XXXXXKFAQRA 132
+FA +
Sbjct: 384 TLNSLRFASKV 394
>pdb|1F9T|A Chain A, Crystal Structures Of Kinesin Mutants Reveal A Signalling
Pathway For Activation Of The Motor Atpase
Length = 358
Score = 100 bits (248), Expect = 5e-21, Method: Compositional matrix adjust.
Identities = 60/131 (45%), Positives = 75/131 (57%), Gaps = 3/131 (2%)
Query: 2 NRASSRSHSVFTCIIESKWESQGVTHHRFARLNLVDLAGSERQKSSGAEGERLKEATNIN 61
N SSRSHS+F II + H + LNLVDLAGSER S G+RL+E NIN
Sbjct: 222 NEHSSRSHSIF--IIHLSGSNAKTGAHSYGTLNLVDLAGSERINVSQVVGDRLRETQNIN 279
Query: 62 KSLSTLGLVIMNLVSISNGKSLHVPYRDSKLTFLLQDSLGGNSKTIIIANIXXXXXXXXX 121
KSLS LG VI L + K H+P+R+SKLT+LLQ SL G+SKT++ NI
Sbjct: 280 KSLSCLGDVIHALGQPDSTKR-HIPFRNSKLTYLLQYSLTGDSKTLMFVNISPSSSHINE 338
Query: 122 XXXXXKFAQRA 132
+FA +
Sbjct: 339 TLNSLRFASKV 349
>pdb|3KAR|A Chain A, The Motor Domain Of Kinesin-Like Protein Kar3, A
Saccharomyces Cerevisiae Kinesin-Related Protein
Length = 346
Score = 100 bits (248), Expect = 5e-21, Method: Compositional matrix adjust.
Identities = 60/131 (45%), Positives = 75/131 (57%), Gaps = 3/131 (2%)
Query: 2 NRASSRSHSVFTCIIESKWESQGVTHHRFARLNLVDLAGSERQKSSGAEGERLKEATNIN 61
N SSRSHS+F II + H + LNLVDLAGSER S G+RL+E NIN
Sbjct: 210 NEHSSRSHSIF--IIHLSGSNAKTGAHSYGTLNLVDLAGSERINVSQVVGDRLRETQNIN 267
Query: 62 KSLSTLGLVIMNLVSISNGKSLHVPYRDSKLTFLLQDSLGGNSKTIIIANIXXXXXXXXX 121
KSLS LG VI L + K H+P+R+SKLT+LLQ SL G+SKT++ NI
Sbjct: 268 KSLSCLGDVIHALGQPDSTKR-HIPFRNSKLTYLLQYSLTGDSKTLMFVNISPSSSHINE 326
Query: 122 XXXXXKFAQRA 132
+FA +
Sbjct: 327 TLNSLRFASKV 337
>pdb|2REP|A Chain A, Crystal Structure Of The Motor Domain Of Human Kinesin
Family Member C1
Length = 376
Score = 99.8 bits (247), Expect = 7e-21, Method: Compositional matrix adjust.
Identities = 63/115 (54%), Positives = 77/115 (66%), Gaps = 10/115 (8%)
Query: 2 NRASSRSHSVFTCIIESKWESQGVTHHRFARLNLVDLAGSERQKSSGAEG----ERLKEA 57
N SSRSHSVF I + S+G+ A L+LVDLAGSER A G ERL+E
Sbjct: 245 NERSSRSHSVFQLQISGEHSSRGLQCG--APLSLVDLAGSERLDPGLALGPGERERLRET 302
Query: 58 TNINKSLSTLGLVIMNLVSISNGKSLHVPYRDSKLTFLLQDSLGGNSKTIIIANI 112
IN SLSTLGLVIM ++SN K HVPYR+SKLT+LLQ+SLGG++K ++ NI
Sbjct: 303 QAINSSLSTLGLVIM---ALSN-KESHVPYRNSKLTYLLQNSLGGSAKMLMFVNI 353
>pdb|4A14|A Chain A, Human Kif7, A Kinesin Involved In Hedgehog Signalling
Length = 344
Score = 99.4 bits (246), Expect = 8e-21, Method: Compositional matrix adjust.
Identities = 58/139 (41%), Positives = 78/139 (56%), Gaps = 7/139 (5%)
Query: 1 MNRASSRSHSVFTCIIE------SKWESQGVTHHRFARLNLVDLAGSERQKSSGAEGERL 54
+N SSRSH+VFT +E S+ ++ + VDLAGSER +G+ GERL
Sbjct: 207 LNHLSSRSHTVFTVTLEQRGRAPSRLPRPAPGQLLVSKFHFVDLAGSERVLKTGSTGERL 266
Query: 55 KEATNINKSLSTLGLVIMNLVSISNGKSLHVPYRDSKLTFLLQDSLGGNSKTIIIANIXX 114
KE+ IN SL LG VI L S H+PYRDSK+T +L+DSLGGN+KT++IA +
Sbjct: 267 KESIQINSSLLALGNVISALGDPQRRGS-HIPYRDSKITRILKDSLGGNAKTVMIACVSP 325
Query: 115 XXXXXXXXXXXXKFAQRAK 133
+A RA+
Sbjct: 326 SSSDFDETLNTLNYASRAQ 344
>pdb|1F9W|A Chain A, Crystal Structures Of Mutants Reveal A Signalling Pathway
For Activation Of The Kinesin Motor Atpase
pdb|1F9W|B Chain B, Crystal Structures Of Mutants Reveal A Signalling Pathway
For Activation Of The Kinesin Motor Atpase
Length = 347
Score = 97.8 bits (242), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 59/131 (45%), Positives = 74/131 (56%), Gaps = 3/131 (2%)
Query: 2 NRASSRSHSVFTCIIESKWESQGVTHHRFARLNLVDLAGSERQKSSGAEGERLKEATNIN 61
N SSRSHS+F II + H + LNLVDLAGS R S G+RL+E NIN
Sbjct: 211 NEHSSRSHSIF--IIHLSGSNAKTGAHSYGTLNLVDLAGSARINVSQVVGDRLRETQNIN 268
Query: 62 KSLSTLGLVIMNLVSISNGKSLHVPYRDSKLTFLLQDSLGGNSKTIIIANIXXXXXXXXX 121
KSLS LG VI L + K H+P+R+SKLT+LLQ SL G+SKT++ NI
Sbjct: 269 KSLSCLGDVIHALGQPDSTKR-HIPFRNSKLTYLLQYSLTGDSKTLMFVNISPSSSHINE 327
Query: 122 XXXXXKFAQRA 132
+FA +
Sbjct: 328 TLNSLRFASKV 338
>pdb|3BFN|A Chain A, Crystal Structure Of The Motor Domain Of Human Kinesin
Family Member 22
Length = 388
Score = 97.4 bits (241), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 61/143 (42%), Positives = 80/143 (55%), Gaps = 5/143 (3%)
Query: 1 MNRASSRSHSVFTCIIESKWESQGVTHHRFARLNLVDLAGSERQKSSGAEGERLKEATNI 60
+N+ SSRSH+V ++ + E R +L L+DLAGSE + +G +G RLKE+ I
Sbjct: 218 LNQRSSRSHAVLLVKVDQR-ERLAPFRQREGKLYLIDLAGSEDNRRTGNKGLRLKESGAI 276
Query: 61 NKSLSTLGLVIMNLVSISNGKSLHVPYRDSKLTFLLQDSLGGNSKTIIIANIXXXXXXXX 120
N SL LG V+ L N VPYRDSKLT LLQDSLGG++ +I+IANI
Sbjct: 277 NTSLFVLGKVVDAL----NQGLPRVPYRDSKLTRLLQDSLGGSAHSILIANIAPERRFYL 332
Query: 121 XXXXXXKFAQRAKFIKNNAIVNE 143
FA R+K + N NE
Sbjct: 333 DTVSALNFAARSKEVINRPFTNE 355
>pdb|1F9U|A Chain A, Crystal Structures Of Mutants Reveal A Signalling Pathway
For Activation Of The Kinesin Motor Atpase
Length = 347
Score = 97.4 bits (241), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 59/131 (45%), Positives = 74/131 (56%), Gaps = 3/131 (2%)
Query: 2 NRASSRSHSVFTCIIESKWESQGVTHHRFARLNLVDLAGSERQKSSGAEGERLKEATNIN 61
N SSRSHS+F II + H + LNLVDLAGSER S G+RL+E NI
Sbjct: 211 NEHSSRSHSIF--IIHLSGSNAKTGAHSYGTLNLVDLAGSERINVSQVVGDRLRETQNIK 268
Query: 62 KSLSTLGLVIMNLVSISNGKSLHVPYRDSKLTFLLQDSLGGNSKTIIIANIXXXXXXXXX 121
KSLS LG VI L + K H+P+R+SKLT+LLQ SL G+SKT++ NI
Sbjct: 269 KSLSCLGDVIHALGQPDSTKR-HIPFRNSKLTYLLQYSLTGDSKTLMFVNISPSSSHINE 327
Query: 122 XXXXXKFAQRA 132
+FA +
Sbjct: 328 TLNSLRFASKV 338
>pdb|1F9V|A Chain A, Crystal Structures Of Mutants Reveal A Signalling Pathway
For Activation Of The Kinesin Motor Atpase
Length = 347
Score = 97.1 bits (240), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 59/131 (45%), Positives = 74/131 (56%), Gaps = 3/131 (2%)
Query: 2 NRASSRSHSVFTCIIESKWESQGVTHHRFARLNLVDLAGSERQKSSGAEGERLKEATNIN 61
N SS SHS+F II + H + LNLVDLAGSER S G+RL+E NIN
Sbjct: 211 NEHSSASHSIF--IIHLSGSNAKTGAHSYGTLNLVDLAGSERINVSQVVGDRLRETQNIN 268
Query: 62 KSLSTLGLVIMNLVSISNGKSLHVPYRDSKLTFLLQDSLGGNSKTIIIANIXXXXXXXXX 121
KSLS LG VI L + K H+P+R+SKLT+LLQ SL G+SKT++ NI
Sbjct: 269 KSLSCLGDVIHALGQPDSTKR-HIPFRNSKLTYLLQYSLTGDSKTLMFVNISPSSSHINE 327
Query: 122 XXXXXKFAQRA 132
+FA +
Sbjct: 328 TLNSLRFASKV 338
>pdb|2XT3|A Chain A, Human Kif7, A Kinesin Involved In Hedgehog Signalling
Length = 344
Score = 88.6 bits (218), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 54/139 (38%), Positives = 76/139 (54%), Gaps = 7/139 (5%)
Query: 1 MNRASSRSHSVFTCIIE------SKWESQGVTHHRFARLNLVDLAGSERQKSSGAEGERL 54
+N SSRSH+VFT ++ S+ ++ + VDLAGSER +G+ GE
Sbjct: 207 LNHLSSRSHTVFTVTLKQRGRAPSRLPRPAPGQLLVSKFHFVDLAGSERVLKTGSTGELR 266
Query: 55 KEATNINKSLSTLGLVIMNLVSISNGKSLHVPYRDSKLTFLLQDSLGGNSKTIIIANIXX 114
KE+ IN SL LG VI L S ++PYRDSK+T +L+DSLGGN+KT++IA +
Sbjct: 267 KESIQINSSLLALGNVISALGDPQRRGS-NIPYRDSKITRILKDSLGGNAKTVMIACVSP 325
Query: 115 XXXXXXXXXXXXKFAQRAK 133
+A RA+
Sbjct: 326 SSSDFDETLNTLNYASRAQ 344
>pdb|2NCD|A Chain A, Ncd (Non-Claret Disjunctional) Dimer From D. Melanogaster
Length = 420
Score = 81.3 bits (199), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 53/112 (47%), Positives = 68/112 (60%), Gaps = 12/112 (10%)
Query: 2 NRASSRSHSVFTC-IIESKWESQGVTHHRFARLNLVDLAGSERQKSSGAEGERLKEATNI 60
N SSRSH+V +I E Q ++ +NLVDLAGSE K+S R+ E NI
Sbjct: 267 NERSSRSHAVTKLELIGRHAEKQEIS---VGSINLVDLAGSESPKTS----TRMTETKNI 319
Query: 61 NKSLSTLGLVIMNLVSISNGKSLHVPYRDSKLTFLLQDSLGGNSKTIIIANI 112
N+SLS L VI+ L+ K H+PYR+SKLT LL SLGGNSKT++ N+
Sbjct: 320 NRSLSELTNVILALLQ----KQDHIPYRNSKLTHLLMPSLGGNSKTLMFINV 367
>pdb|3L1C|A Chain A, Kinesin-14 Protein Ncd, T436s Mutant
pdb|3L1C|B Chain B, Kinesin-14 Protein Ncd, T436s Mutant
Length = 383
Score = 81.3 bits (199), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 53/112 (47%), Positives = 68/112 (60%), Gaps = 12/112 (10%)
Query: 2 NRASSRSHSVFTC-IIESKWESQGVTHHRFARLNLVDLAGSERQKSSGAEGERLKEATNI 60
N SSRSH+V +I E Q ++ +NLVDLAGSE K+S R+ E NI
Sbjct: 256 NERSSRSHAVTKLELIGRHAEKQEIS---VGSINLVDLAGSESPKTS----TRMTETKNI 308
Query: 61 NKSLSTLGLVIMNLVSISNGKSLHVPYRDSKLTFLLQDSLGGNSKTIIIANI 112
N+SLS L VI+ L+ K H+PYR+SKLT LL SLGGNSKT++ N+
Sbjct: 309 NRSLSELTNVILALLQ----KQDHIPYRNSKLTHLLMPSLGGNSKTLMFINV 356
>pdb|3U06|A Chain A, Crystal Structure Of The Kinesin-14 Ncdg347d
pdb|3U06|B Chain B, Crystal Structure Of The Kinesin-14 Ncdg347d
Length = 412
Score = 80.9 bits (198), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 53/112 (47%), Positives = 68/112 (60%), Gaps = 12/112 (10%)
Query: 2 NRASSRSHSVFTC-IIESKWESQGVTHHRFARLNLVDLAGSERQKSSGAEGERLKEATNI 60
N SSRSH+V +I E Q ++ +NLVDLAGSE K+S R+ E NI
Sbjct: 259 NERSSRSHAVTKLELIGRHAEKQEIS---VGSINLVDLAGSESPKTS----TRMTETKNI 311
Query: 61 NKSLSTLGLVIMNLVSISNGKSLHVPYRDSKLTFLLQDSLGGNSKTIIIANI 112
N+SLS L VI+ L+ K H+PYR+SKLT LL SLGGNSKT++ N+
Sbjct: 312 NRSLSELTNVILALLQ----KQDHIPYRNSKLTHLLMPSLGGNSKTLMFINV 359
>pdb|1CZ7|A Chain A, The Crystal Structure Of A Minus-End Directed Microtubule
Motor Protein Ncd Reveals Variable Dimer Conformations
pdb|1CZ7|B Chain B, The Crystal Structure Of A Minus-End Directed Microtubule
Motor Protein Ncd Reveals Variable Dimer Conformations
pdb|1CZ7|C Chain C, The Crystal Structure Of A Minus-End Directed Microtubule
Motor Protein Ncd Reveals Variable Dimer Conformations
pdb|1CZ7|D Chain D, The Crystal Structure Of A Minus-End Directed Microtubule
Motor Protein Ncd Reveals Variable Dimer Conformations
Length = 406
Score = 80.9 bits (198), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 53/112 (47%), Positives = 68/112 (60%), Gaps = 12/112 (10%)
Query: 2 NRASSRSHSVFTC-IIESKWESQGVTHHRFARLNLVDLAGSERQKSSGAEGERLKEATNI 60
N SSRSH+V +I E Q ++ +NLVDLAGSE K+S R+ E NI
Sbjct: 253 NERSSRSHAVTKLELIGRHAEKQEIS---VGSINLVDLAGSESPKTS----TRMTETKNI 305
Query: 61 NKSLSTLGLVIMNLVSISNGKSLHVPYRDSKLTFLLQDSLGGNSKTIIIANI 112
N+SLS L VI+ L+ K H+PYR+SKLT LL SLGGNSKT++ N+
Sbjct: 306 NRSLSELTNVILALLQ----KQDHIPYRNSKLTHLLMPSLGGNSKTLMFINV 353
>pdb|1N6M|A Chain A, Rotation Of The StalkNECK AND ONE HEAD IN A NEW CRYSTAL
Structure Of The Kinesin Motor Protein, Ncd
pdb|1N6M|B Chain B, Rotation Of The StalkNECK AND ONE HEAD IN A NEW CRYSTAL
Structure Of The Kinesin Motor Protein, Ncd
Length = 409
Score = 78.2 bits (191), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 52/112 (46%), Positives = 67/112 (59%), Gaps = 12/112 (10%)
Query: 2 NRASSRSHSVFTC-IIESKWESQGVTHHRFARLNLVDLAGSERQKSSGAEGERLKEATNI 60
N SSRSH+V +I E Q ++ +NLVDLAGSE K+S R+ E NI
Sbjct: 256 NERSSRSHAVTKLELIGRHAEKQEIS---VGSINLVDLAGSESPKTS----TRMTETKNI 308
Query: 61 NKSLSTLGLVIMNLVSISNGKSLHVPYRDSKLTFLLQDSLGGNSKTIIIANI 112
+SLS L VI+ L+ K H+PYR+SKLT LL SLGGNSKT++ N+
Sbjct: 309 KRSLSELTNVILALLQ----KQDHIPYRNSKLTHLLMPSLGGNSKTLMFINV 356
>pdb|3DC4|A Chain A, Crystal Structure Of The Drosophila Kinesin Family Member
Nod In Complex With Adp
pdb|3DCB|A Chain A, Crystal Structure Of The Drosophila Kinesin Family Member
Nod In Complex With Amppnp
pdb|3DCO|N Chain N, Drosophila Nod (3dc4) And Bovine Tubulin (1jff) Docked
Into The 11-Angstrom Cryo-Em Map Of Nucleotide-Free Nod
Complexed To The Microtubule
Length = 344
Score = 77.8 bits (190), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 51/133 (38%), Positives = 72/133 (54%), Gaps = 12/133 (9%)
Query: 1 MNRASSRSHSVFTCIIESKWESQGVTHHRFARLNLVDLAGSERQKSSGAEGERLKEATNI 60
MN SSRSH++ T ++SK THH +R+N+VDLAGSE + +G EG +E NI
Sbjct: 213 MNSNSSRSHAIVTIHVKSK------THH--SRMNIVDLAGSEGVRRTGHEGVARQEGVNI 264
Query: 61 NKSLSTLGLVIMNLVSISNGKSLHVPYRDSKLTFLLQDSLGGNSKTIIIANIXXXXXXXX 120
N L ++ V+M S++ G ++ +PYRDS LT +LQ SL S +A I
Sbjct: 265 NLGLLSINKVVM---SMAAGHTV-IPYRDSVLTTVLQASLTAQSYLTFLACISPHQCDLS 320
Query: 121 XXXXXXKFAQRAK 133
+F AK
Sbjct: 321 ETLSTLRFGTSAK 333
>pdb|3PXN|A Chain A, Crystal Structure Of The Drosophila Kinesin Family Member
Kin10NOD IN Complex With Divalent Manganese And Adp
Length = 344
Score = 77.8 bits (190), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 51/133 (38%), Positives = 72/133 (54%), Gaps = 12/133 (9%)
Query: 1 MNRASSRSHSVFTCIIESKWESQGVTHHRFARLNLVDLAGSERQKSSGAEGERLKEATNI 60
MN SSRSH++ T ++SK THH +R+N+VDLAGSE + +G EG +E NI
Sbjct: 213 MNSNSSRSHAIVTIHVKSK------THH--SRMNIVDLAGSEGVRRTGHEGVARQEGVNI 264
Query: 61 NKSLSTLGLVIMNLVSISNGKSLHVPYRDSKLTFLLQDSLGGNSKTIIIANIXXXXXXXX 120
N L ++ V+M S++ G ++ +PYRDS LT +LQ SL S +A I
Sbjct: 265 NLGLLSINKVVM---SMAAGHTV-IPYRDSVLTTVLQASLTAQSYLTFLACISPHQCDLS 320
Query: 121 XXXXXXKFAQRAK 133
+F AK
Sbjct: 321 ETLSTLRFGTSAK 333
>pdb|3KIN|B Chain B, Kinesin (Dimeric) From Rattus Norvegicus
pdb|3KIN|D Chain D, Kinesin (Dimeric) From Rattus Norvegicus
Length = 117
Score = 70.9 bits (172), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 39/82 (47%), Positives = 46/82 (56%), Gaps = 3/82 (3%)
Query: 61 NKSLSTLGLVIMNLVSISNGKSLHVPYRDSKLTFLLQDSLGGNSKTIIIANIXXXXXXXX 120
NKSLS LG VI +++ G HVPYRDSK+T +LQDSLGGN +T I+
Sbjct: 1 NKSLSALGNVIS---ALAEGTKTHVPYRDSKMTRILQDSLGGNCRTTIVICCSPSVFNEA 57
Query: 121 XXXXXXKFAQRAKFIKNNAIVN 142
F QRAK IKN VN
Sbjct: 58 ETKSTLMFGQRAKTIKNTVSVN 79
>pdb|2KIN|B Chain B, Kinesin (Monomeric) From Rattus Norvegicus
Length = 100
Score = 69.7 bits (169), Expect = 7e-12, Method: Composition-based stats.
Identities = 41/86 (47%), Positives = 48/86 (55%), Gaps = 3/86 (3%)
Query: 57 ATNINKSLSTLGLVIMNLVSISNGKSLHVPYRDSKLTFLLQDSLGGNSKTIIIANIXXXX 116
A NINKSLS LG VI +++ G HVPYRDSK+T +LQDSL GN +T I+
Sbjct: 1 AKNINKSLSALGNVIS---ALAEGTKTHVPYRDSKMTRILQDSLDGNCRTTIVICCSPSV 57
Query: 117 XXXXXXXXXXKFAQRAKFIKNNAIVN 142
F QRAK IKN VN
Sbjct: 58 FNEAETKSTLMFGQRAKTIKNTVSVN 83
>pdb|2GRY|A Chain A, Crystal Structure Of The Human Kif2 Motor Domain In
Complex With Adp
Length = 420
Score = 66.2 bits (160), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 52/135 (38%), Positives = 71/135 (52%), Gaps = 15/135 (11%)
Query: 2 NRASSRSHSVFTCIIESKWESQGVTHHRFARLNLVDLAGSER-QKSSGAEGERLKEATNI 60
N SSRSH+VF I+ K G H +F+ L+DLAG+ER +S A+ + E I
Sbjct: 296 NAHSSRSHAVFQIILRRK----GKLHGKFS---LIDLAGNERGADTSSADRQTRLEGAEI 348
Query: 61 NKSLSTLGLVIMNLVSISNGKS-LHVPYRDSKLTFLLQDS-LGGNSKTIIIANIXXXXXX 118
NKSL L I L G++ H P+R SKLT +L+DS +G NS+T +IA I
Sbjct: 349 NKSLLALKECIRAL-----GRNKPHTPFRASKLTQVLRDSFIGENSRTCMIATISPGMAS 403
Query: 119 XXXXXXXXKFAQRAK 133
++A R K
Sbjct: 404 CENTLNTLRYANRVK 418
>pdb|2HEH|A Chain A, Crystal Structure Of The Kif2c Motor Domain (Casp Target)
Length = 387
Score = 65.9 bits (159), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 51/134 (38%), Positives = 69/134 (51%), Gaps = 13/134 (9%)
Query: 2 NRASSRSHSVFTCIIESKWESQGVTHHRFARLNLVDLAGSER-QKSSGAEGERLKEATNI 60
N SSRSH+ F I+ +K G H +F+ LVDLAG+ER +S A+ + E I
Sbjct: 258 NSNSSRSHACFQIILRAK----GRMHGKFS---LVDLAGNERGADTSSADRQTRMEGAEI 310
Query: 61 NKSLSTLGLVIMNLVSISNGKSLHVPYRDSKLTFLLQDS-LGGNSKTIIIANIXXXXXXX 119
NKSL L I L H P+R+SKLT +L+DS +G NS+T +IA I
Sbjct: 311 NKSLLALKECIRAL----GQNKAHTPFRESKLTQVLRDSFIGENSRTCMIATISPGISSC 366
Query: 120 XXXXXXXKFAQRAK 133
++A R K
Sbjct: 367 EYTLNTLRYADRVK 380
>pdb|1V8J|A Chain A, The Crystal Structure Of The Minimal Functional Domain Of
The Microtubule Destabilizer Kif2c Complexed With Mg-adp
pdb|1V8K|A Chain A, The Crystal Structure Of The Minimal Functional Domain Of
The Microtubule Destabilizer Kif2c Complexed With
Mg-Amppnp
Length = 410
Score = 65.1 bits (157), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 50/134 (37%), Positives = 69/134 (51%), Gaps = 13/134 (9%)
Query: 2 NRASSRSHSVFTCIIESKWESQGVTHHRFARLNLVDLAGSER-QKSSGAEGERLKEATNI 60
N SSRSH+ F ++ +K G H +F+ LVDLAG+ER +S A+ + E I
Sbjct: 278 NSNSSRSHACFQILLRTK----GRLHGKFS---LVDLAGNERGADTSSADRQTRMEGAEI 330
Query: 61 NKSLSTLGLVIMNLVSISNGKSLHVPYRDSKLTFLLQDS-LGGNSKTIIIANIXXXXXXX 119
NKSL L I L H P+R+SKLT +L+DS +G NS+T +IA I
Sbjct: 331 NKSLLALKECIRAL----GQNKAHTPFRESKLTQVLRDSFIGENSRTCMIAMISPGISSC 386
Query: 120 XXXXXXXKFAQRAK 133
++A R K
Sbjct: 387 EYTLNTLRYADRVK 400
>pdb|3EDL|D Chain D, Kinesin13-Microtubule Ring Complex
Length = 331
Score = 63.5 bits (153), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 50/134 (37%), Positives = 69/134 (51%), Gaps = 13/134 (9%)
Query: 2 NRASSRSHSVFTCIIESKWESQGVTHHRFARLNLVDLAGSER-QKSSGAEGERLKEATNI 60
N SSRSH+ F ++ +K G H +F+ LVDLAG+ER +S A+ + E I
Sbjct: 206 NSNSSRSHACFQILLRTK----GRLHGKFS---LVDLAGNERGADTSSADRQTRMEGAEI 258
Query: 61 NKSLSTLGLVIMNLVSISNGKSLHVPYRDSKLTFLLQDS-LGGNSKTIIIANIXXXXXXX 119
NKSL L I L H P+R+SKLT +L+DS +G NS+T +IA I
Sbjct: 259 NKSLLALKECIRAL----GQNKAHTPFRESKLTQVLRDSFIGENSRTCMIAMISPGISSC 314
Query: 120 XXXXXXXKFAQRAK 133
++A R K
Sbjct: 315 EYTLNTLRYADRVK 328
>pdb|1RY6|A Chain A, Crystal Structure Of Internal Kinesin Motor Domain
Length = 360
Score = 60.5 bits (145), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 44/133 (33%), Positives = 71/133 (53%), Gaps = 10/133 (7%)
Query: 2 NRASSRSHSVFTCIIESKWESQGVTHHRFARLNLVDLAGSERQKSSGAEGERLK-EATNI 60
N SSRSH++ I+ K ++ + + A +DLAGSER + ++ ++ + + NI
Sbjct: 206 NDESSRSHAILN--IDLKDINKNTSLGKIA---FIDLAGSERGADTVSQNKQTQTDGANI 260
Query: 61 NKSLSTLGLVIMNLVSISNGKSLHVPYRDSKLTFLLQDSLGGNSKTIIIANIXXXXXXXX 120
N+SL L I + S N H+P+RDS+LT +L+D G SK+I+IANI
Sbjct: 261 NRSLLALKECIRAMDSDKN----HIPFRDSELTKVLRDIFVGKSKSIMIANISPTISCCE 316
Query: 121 XXXXXXKFAQRAK 133
+++ R K
Sbjct: 317 QTLNTLRYSSRVK 329
>pdb|2KIN|A Chain A, Kinesin (Monomeric) From Rattus Norvegicus
pdb|3KIN|A Chain A, Kinesin (Dimeric) From Rattus Norvegicus
pdb|3KIN|C Chain C, Kinesin (Dimeric) From Rattus Norvegicus
Length = 238
Score = 34.3 bits (77), Expect = 0.31, Method: Composition-based stats.
Identities = 21/43 (48%), Positives = 26/43 (60%), Gaps = 2/43 (4%)
Query: 1 MNRASSRSHSVFTCIIESKWESQGVTHHRFARLNLVDLAGSER 43
MN SSRSHS+F +I K E+ +L LVDLAGSE+
Sbjct: 197 MNEHSSRSHSIF--LINIKQENVETEKKLSGKLYLVDLAGSEK 237
>pdb|3I6E|A Chain A, Crystal Structure Of Muconate Lactonizing Enzyme From
Ruegeria Pomeroyi.
pdb|3I6E|B Chain B, Crystal Structure Of Muconate Lactonizing Enzyme From
Ruegeria Pomeroyi.
pdb|3I6E|C Chain C, Crystal Structure Of Muconate Lactonizing Enzyme From
Ruegeria Pomeroyi.
pdb|3I6E|D Chain D, Crystal Structure Of Muconate Lactonizing Enzyme From
Ruegeria Pomeroyi.
pdb|3I6E|E Chain E, Crystal Structure Of Muconate Lactonizing Enzyme From
Ruegeria Pomeroyi.
pdb|3I6E|F Chain F, Crystal Structure Of Muconate Lactonizing Enzyme From
Ruegeria Pomeroyi.
pdb|3I6E|G Chain G, Crystal Structure Of Muconate Lactonizing Enzyme From
Ruegeria Pomeroyi.
pdb|3I6E|H Chain H, Crystal Structure Of Muconate Lactonizing Enzyme From
Ruegeria Pomeroyi
Length = 385
Score = 32.3 bits (72), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 17/53 (32%), Positives = 25/53 (47%), Gaps = 1/53 (1%)
Query: 162 EVSRLRGIAHGGAESLVNDSPTVSFPGSPGSIKWEGLHESFSPLISDKRMSQK 214
E+ LR +A GGAE SP F G+P + L PL+ +R+ +
Sbjct: 38 EIVVLRLVAEGGAEGFGEASPWAVFTGTP-EASYAALDRYLRPLVIGRRVGDR 89
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.312 0.128 0.344
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 21,335,927
Number of Sequences: 62578
Number of extensions: 729677
Number of successful extensions: 2069
Number of sequences better than 100.0: 88
Number of HSP's better than 100.0 without gapping: 60
Number of HSP's successfully gapped in prelim test: 28
Number of HSP's that attempted gapping in prelim test: 1857
Number of HSP's gapped (non-prelim): 126
length of query: 953
length of database: 14,973,337
effective HSP length: 108
effective length of query: 845
effective length of database: 8,214,913
effective search space: 6941601485
effective search space used: 6941601485
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 56 (26.2 bits)