Query 002212
Match_columns 953
No_of_seqs 302 out of 1551
Neff 3.6
Searched_HMMs 46136
Date Thu Mar 28 19:04:10 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/002212.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/002212hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN03188 kinesin-12 family pro 100.0 4.3E-45 9.3E-50 434.2 46.5 170 1-170 297-469 (1320)
2 KOG0243 Kinesin-like protein [ 100.0 7E-42 1.5E-46 403.3 54.8 440 1-543 259-709 (1041)
3 KOG0245 Kinesin-like protein [ 100.0 7.2E-46 1.6E-50 431.6 18.4 168 1-174 209-381 (1221)
4 KOG4280 Kinesin-like protein [ 100.0 4.2E-45 9.1E-50 414.8 13.3 163 1-166 204-368 (574)
5 KOG0240 Kinesin (SMY1 subfamil 100.0 2.2E-40 4.8E-45 371.1 23.2 148 1-153 202-349 (607)
6 KOG0241 Kinesin-like protein [ 100.0 2.3E-38 4.9E-43 364.0 18.1 166 1-172 213-382 (1714)
7 cd01373 KISc_KLP2_like Kinesin 100.0 1.2E-37 2.6E-42 335.7 14.0 135 1-135 203-337 (337)
8 KOG0242 Kinesin-like protein [ 100.0 7.8E-38 1.7E-42 363.8 9.4 162 1-167 202-365 (675)
9 cd01365 KISc_KIF1A_KIF1B Kines 100.0 1.8E-35 4E-40 320.3 14.2 142 1-142 209-356 (356)
10 cd01364 KISc_BimC_Eg5 Kinesin 100.0 2E-35 4.4E-40 318.9 14.3 140 1-144 212-352 (352)
11 cd01370 KISc_KIP3_like Kinesin 100.0 1.7E-35 3.7E-40 319.2 13.3 134 1-135 204-338 (338)
12 KOG0244 Kinesin-like protein [ 100.0 3.3E-35 7.1E-40 343.1 16.4 164 1-167 186-350 (913)
13 cd01368 KISc_KIF23_like Kinesi 100.0 8.9E-35 1.9E-39 314.6 13.2 133 1-133 205-345 (345)
14 cd01371 KISc_KIF3 Kinesin moto 100.0 1.2E-33 2.6E-38 303.8 14.3 132 1-135 201-333 (333)
15 cd01372 KISc_KIF4 Kinesin moto 100.0 1.7E-33 3.7E-38 302.1 14.1 135 1-136 199-341 (341)
16 cd01375 KISc_KIF9_like Kinesin 100.0 2.4E-33 5.2E-38 301.8 13.6 130 1-133 205-334 (334)
17 cd01369 KISc_KHC_KIF5 Kinesin 100.0 3E-33 6.6E-38 298.8 13.9 130 1-135 196-325 (325)
18 cd01376 KISc_KID_like Kinesin 100.0 2.9E-33 6.3E-38 299.2 13.0 125 1-133 195-319 (319)
19 cd01374 KISc_CENP_E Kinesin mo 100.0 6.4E-33 1.4E-37 296.2 13.2 132 1-135 189-321 (321)
20 cd01367 KISc_KIF2_like Kinesin 100.0 5.9E-33 1.3E-37 297.5 12.6 124 1-133 198-322 (322)
21 smart00129 KISc Kinesin motor, 100.0 2E-32 4.3E-37 292.5 14.5 140 1-142 196-335 (335)
22 cd01366 KISc_C_terminal Kinesi 100.0 2.4E-32 5.3E-37 292.0 13.6 132 1-138 198-329 (329)
23 KOG0247 Kinesin-like protein [ 100.0 1.6E-30 3.5E-35 297.9 28.0 146 1-146 301-447 (809)
24 PF00225 Kinesin: Kinesin moto 100.0 2.6E-32 5.6E-37 290.9 11.4 133 1-135 200-335 (335)
25 KOG0239 Kinesin (KAR3 subfamil 100.0 2.6E-32 5.7E-37 317.4 10.9 141 1-147 512-652 (670)
26 cd00106 KISc Kinesin motor dom 100.0 2.8E-30 6E-35 274.6 13.9 131 1-133 198-328 (328)
27 cd01363 Motor_domain Myosin an 100.0 5E-30 1.1E-34 255.0 11.9 110 1-114 76-186 (186)
28 COG5059 KIP1 Kinesin-like prot 100.0 1E-29 2.2E-34 291.9 14.0 162 1-166 206-369 (568)
29 KOG0246 Kinesin-like protein [ 100.0 6.2E-30 1.3E-34 287.2 11.3 130 2-140 415-546 (676)
30 PF12711 Kinesin-relat_1: Kine 98.6 3.6E-08 7.7E-13 90.4 5.7 56 266-321 1-86 (86)
31 PF06548 Kinesin-related: Kine 98.5 0.00016 3.4E-09 82.5 30.9 191 215-408 101-331 (488)
32 PF10174 Cast: RIM-binding pro 98.1 0.074 1.6E-06 65.5 42.2 59 775-834 501-559 (775)
33 TIGR00606 rad50 rad50. This fa 98.0 0.14 2.9E-06 66.2 56.8 280 496-841 740-1039(1311)
34 TIGR00606 rad50 rad50. This fa 98.0 0.14 3E-06 66.1 61.0 53 356-408 317-369 (1311)
35 TIGR02169 SMC_prok_A chromosom 98.0 0.11 2.5E-06 64.3 58.9 12 87-98 55-66 (1164)
36 KOG0161 Myosin class II heavy 97.9 0.23 5E-06 66.1 60.5 404 507-949 1189-1624(1930)
37 KOG0161 Myosin class II heavy 97.8 0.39 8.4E-06 64.1 59.7 162 625-817 1197-1358(1930)
38 KOG0933 Structural maintenance 97.7 0.31 6.6E-06 61.1 39.7 176 733-910 791-982 (1174)
39 PRK02224 chromosome segregatio 97.6 0.39 8.5E-06 59.0 57.1 43 790-832 648-690 (880)
40 PRK02224 chromosome segregatio 97.6 0.4 8.6E-06 59.0 50.1 38 360-397 208-245 (880)
41 TIGR02168 SMC_prok_B chromosom 97.4 0.66 1.4E-05 57.5 62.6 45 795-839 817-861 (1179)
42 KOG0976 Rho/Rac1-interacting s 97.3 0.82 1.8E-05 56.3 33.7 264 349-753 254-525 (1265)
43 TIGR02169 SMC_prok_A chromosom 97.2 1.1 2.5E-05 55.8 62.8 24 887-910 980-1003(1164)
44 PF00261 Tropomyosin: Tropomyo 96.7 0.39 8.4E-06 51.2 21.8 227 502-814 3-230 (237)
45 TIGR02168 SMC_prok_B chromosom 96.6 3.3 7.1E-05 51.5 67.5 12 86-97 54-65 (1179)
46 PF10174 Cast: RIM-binding pro 96.6 3.4 7.3E-05 51.6 46.7 147 353-546 289-454 (775)
47 PF01576 Myosin_tail_1: Myosin 96.5 0.00071 1.5E-08 83.3 0.0 234 584-841 350-599 (859)
48 KOG0996 Structural maintenance 96.4 5.1 0.00011 51.6 42.2 100 625-724 779-878 (1293)
49 COG1196 Smc Chromosome segrega 96.4 5.3 0.00012 51.6 57.3 31 84-114 53-88 (1163)
50 PRK03918 chromosome segregatio 96.3 4.3 9.3E-05 50.0 54.8 42 504-545 388-429 (880)
51 PF00038 Filament: Intermediat 96.2 2.3 5.1E-05 46.2 27.0 40 507-546 54-93 (312)
52 KOG0964 Structural maintenance 95.9 7.9 0.00017 49.2 43.5 144 308-521 359-502 (1200)
53 PRK03918 chromosome segregatio 95.3 11 0.00023 46.7 61.6 34 493-526 452-485 (880)
54 PF07888 CALCOCO1: Calcium bin 94.9 5.3 0.00011 48.1 23.2 38 619-656 366-403 (546)
55 KOG0971 Microtubule-associated 94.4 11 0.00023 47.9 24.3 165 351-524 368-549 (1243)
56 KOG4674 Uncharacterized conser 94.3 30 0.00065 47.1 60.4 123 789-912 1216-1340(1822)
57 COG1196 Smc Chromosome segrega 94.0 27 0.00058 45.5 61.9 43 630-672 673-715 (1163)
58 KOG0971 Microtubule-associated 93.9 16 0.00035 46.3 24.6 159 354-518 227-428 (1243)
59 KOG4643 Uncharacterized coiled 93.6 30 0.00064 44.6 34.9 44 888-931 828-871 (1195)
60 KOG0996 Structural maintenance 93.6 32 0.0007 44.9 28.2 202 503-747 387-588 (1293)
61 KOG0977 Nuclear envelope prote 93.4 12 0.00027 45.2 22.1 43 363-405 90-132 (546)
62 PRK04778 septation ring format 93.4 23 0.0005 42.6 29.9 152 595-747 77-241 (569)
63 KOG4673 Transcription factor T 93.3 27 0.00059 43.3 42.7 345 289-747 409-768 (961)
64 PF07888 CALCOCO1: Calcium bin 93.2 25 0.00055 42.6 33.7 41 637-677 275-315 (546)
65 KOG0977 Nuclear envelope prote 92.7 4 8.8E-05 49.1 17.0 280 227-545 37-355 (546)
66 PRK11637 AmiB activator; Provi 92.7 15 0.00033 42.3 21.2 47 357-403 81-127 (428)
67 KOG0978 E3 ubiquitin ligase in 92.3 37 0.0008 42.3 45.3 453 312-831 107-616 (698)
68 COG5059 KIP1 Kinesin-like prot 92.2 0.027 5.8E-07 67.0 -1.5 68 1-74 498-565 (568)
69 PRK01156 chromosome segregatio 92.1 41 0.00088 42.2 55.6 105 702-838 620-724 (895)
70 KOG0612 Rho-associated, coiled 92.1 51 0.0011 43.3 31.0 42 618-659 610-651 (1317)
71 PF05622 HOOK: HOOK protein; 91.7 0.16 3.5E-06 61.7 4.2 51 493-543 363-420 (713)
72 PF09730 BicD: Microtubule-ass 90.6 56 0.0012 41.0 26.6 58 351-408 121-178 (717)
73 PF12128 DUF3584: Protein of u 90.6 69 0.0015 42.1 64.2 45 292-336 298-344 (1201)
74 PF08317 Spc7: Spc7 kinetochor 90.4 25 0.00055 39.4 19.3 121 619-747 70-195 (325)
75 PF09726 Macoilin: Transmembra 90.2 48 0.001 41.4 22.9 72 641-747 583-654 (697)
76 KOG0250 DNA repair protein RAD 90.2 71 0.0015 41.6 26.8 40 499-538 400-439 (1074)
77 PHA02562 46 endonuclease subun 89.7 48 0.001 38.9 23.7 45 797-841 353-397 (562)
78 PLN02939 transferase, transfer 89.5 38 0.00083 43.7 21.6 127 261-409 143-287 (977)
79 PF00038 Filament: Intermediat 89.2 38 0.00081 37.0 30.6 192 286-526 22-221 (312)
80 PRK04863 mukB cell division pr 89.1 1E+02 0.0022 41.8 32.3 142 589-733 512-660 (1486)
81 COG1579 Zn-ribbon protein, pos 89.0 17 0.00038 39.8 16.1 76 358-443 31-106 (239)
82 cd07627 BAR_Vps5p The Bin/Amph 88.0 39 0.00085 35.7 19.6 76 638-714 58-135 (216)
83 KOG0995 Centromere-associated 87.9 75 0.0016 38.9 30.1 131 285-436 290-431 (581)
84 PF05701 WEMBL: Weak chloropla 87.6 72 0.0016 38.3 42.4 153 581-747 335-492 (522)
85 PF00261 Tropomyosin: Tropomyo 87.6 21 0.00045 38.3 15.5 157 497-680 33-190 (237)
86 PF13851 GAS: Growth-arrest sp 87.4 35 0.00076 36.2 16.9 58 493-550 27-84 (201)
87 PHA02562 46 endonuclease subun 87.4 39 0.00084 39.7 18.9 22 591-612 307-328 (562)
88 PF09726 Macoilin: Transmembra 87.0 79 0.0017 39.6 21.8 38 351-388 538-575 (697)
89 PF05557 MAD: Mitotic checkpoi 86.2 3.4 7.3E-05 50.7 9.9 60 733-806 521-584 (722)
90 COG1579 Zn-ribbon protein, pos 85.3 31 0.00067 38.0 15.5 115 584-747 60-174 (239)
91 PF01576 Myosin_tail_1: Myosin 85.2 0.27 5.7E-06 61.4 0.0 60 489-548 225-284 (859)
92 TIGR03185 DNA_S_dndD DNA sulfu 84.4 1.1E+02 0.0024 37.5 22.0 61 793-853 389-451 (650)
93 KOG0933 Structural maintenance 83.8 1.5E+02 0.0033 38.7 33.6 53 592-644 960-1014(1174)
94 PRK11637 AmiB activator; Provi 82.7 1E+02 0.0022 35.8 20.5 73 588-660 45-118 (428)
95 COG4942 Membrane-bound metallo 82.6 1.1E+02 0.0024 36.3 20.1 52 358-409 38-89 (420)
96 KOG4643 Uncharacterized coiled 82.1 1.8E+02 0.0038 38.2 40.8 17 304-320 277-293 (1195)
97 PF06160 EzrA: Septation ring 81.7 1.3E+02 0.0029 36.4 34.7 55 699-753 377-431 (560)
98 PF05701 WEMBL: Weak chloropla 80.9 1.4E+02 0.003 36.1 38.5 122 795-923 323-444 (522)
99 PF09789 DUF2353: Uncharacteri 80.8 90 0.0019 35.8 17.3 61 304-375 160-220 (319)
100 KOG1003 Actin filament-coating 80.7 89 0.0019 33.8 17.4 151 584-747 5-155 (205)
101 PF05483 SCP-1: Synaptonemal c 80.4 1.7E+02 0.0037 36.9 29.7 118 492-650 586-708 (786)
102 KOG0978 E3 ubiquitin ligase in 79.7 1.8E+02 0.0039 36.7 39.1 166 501-686 462-634 (698)
103 KOG1029 Endocytic adaptor prot 79.6 1.9E+02 0.0042 37.0 25.1 26 752-777 825-850 (1118)
104 PF05276 SH3BP5: SH3 domain-bi 78.4 1.1E+02 0.0024 33.7 17.0 191 458-663 8-227 (239)
105 PF15070 GOLGA2L5: Putative go 78.3 1.8E+02 0.004 36.0 29.5 104 288-403 28-132 (617)
106 PF05667 DUF812: Protein of un 78.2 1.8E+02 0.0039 35.9 22.3 39 364-402 327-365 (594)
107 PF09789 DUF2353: Uncharacteri 76.4 1.5E+02 0.0033 34.1 24.8 60 619-681 184-248 (319)
108 PRK04778 septation ring format 73.7 2.2E+02 0.0047 34.6 39.0 162 339-522 244-405 (569)
109 PF13851 GAS: Growth-arrest sp 73.5 1.3E+02 0.0028 32.0 16.9 70 477-546 57-132 (201)
110 KOG0250 DNA repair protein RAD 72.9 3.2E+02 0.0069 36.1 44.6 108 707-845 786-893 (1074)
111 PF07926 TPR_MLP1_2: TPR/MLP1/ 72.1 1.1E+02 0.0023 30.3 13.6 35 485-522 93-127 (132)
112 PF06160 EzrA: Septation ring 71.9 2.4E+02 0.0052 34.3 34.5 173 339-539 240-415 (560)
113 PF12252 SidE: Dot/Icm substra 71.1 3.5E+02 0.0076 35.9 23.9 172 269-479 1111-1313(1439)
114 PRK09039 hypothetical protein; 69.7 1.8E+02 0.0039 33.4 16.2 46 791-836 140-185 (343)
115 PF05557 MAD: Mitotic checkpoi 68.5 23 0.0005 43.7 9.6 67 477-546 575-642 (722)
116 PF10473 CENP-F_leu_zip: Leuci 68.4 1.5E+02 0.0032 30.5 13.7 123 379-520 17-139 (140)
117 PRK01156 chromosome segregatio 68.4 3.3E+02 0.0071 34.5 49.0 39 364-402 196-234 (895)
118 KOG0243 Kinesin-like protein [ 68.0 1.8E+02 0.004 38.1 17.2 160 787-946 410-588 (1041)
119 smart00787 Spc7 Spc7 kinetocho 67.7 2.3E+02 0.0049 32.4 19.9 194 610-848 59-257 (312)
120 KOG0994 Extracellular matrix g 67.6 4.3E+02 0.0094 35.6 38.2 61 349-409 1230-1297(1758)
121 KOG0979 Structural maintenance 65.3 4.4E+02 0.0095 34.8 20.1 49 612-660 851-899 (1072)
122 TIGR03007 pepcterm_ChnLen poly 64.7 2.8E+02 0.0062 32.4 19.1 94 645-751 204-297 (498)
123 KOG0999 Microtubule-associated 63.2 1.5E+02 0.0033 36.5 14.4 126 792-921 111-236 (772)
124 PF05377 FlaC_arch: Flagella a 62.7 20 0.00043 31.6 5.4 46 811-856 2-47 (55)
125 PF09730 BicD: Microtubule-ass 62.7 4.2E+02 0.0091 33.7 35.7 180 631-841 279-458 (717)
126 PF14197 Cep57_CLD_2: Centroso 62.5 47 0.001 30.1 8.0 67 309-400 2-68 (69)
127 TIGR03185 DNA_S_dndD DNA sulfu 62.4 3.8E+02 0.0081 33.0 33.8 98 500-627 209-306 (650)
128 PF14662 CCDC155: Coiled-coil 61.5 2.4E+02 0.0052 30.5 17.8 50 360-409 17-66 (193)
129 PF09728 Taxilin: Myosin-like 61.3 2.9E+02 0.0063 31.4 29.4 239 355-671 47-291 (309)
130 PF05911 DUF869: Plant protein 61.0 4.6E+02 0.01 33.6 30.2 44 234-277 266-309 (769)
131 PF12718 Tropomyosin_1: Tropom 59.7 2E+02 0.0044 29.1 15.8 51 355-405 4-54 (143)
132 PRK04863 mukB cell division pr 58.7 6.5E+02 0.014 34.7 47.2 167 651-835 941-1114(1486)
133 TIGR01005 eps_transp_fam exopo 58.7 4.5E+02 0.0097 32.8 18.7 103 644-751 236-338 (754)
134 PF15397 DUF4618: Domain of un 58.7 3.1E+02 0.0067 30.9 20.6 32 263-301 1-32 (258)
135 KOG0982 Centrosomal protein Nu 58.1 1.3E+02 0.0028 36.0 12.4 115 719-902 298-415 (502)
136 PF15066 CAGE1: Cancer-associa 57.7 4.2E+02 0.009 32.3 16.4 30 372-401 478-507 (527)
137 COG0419 SbcC ATPase involved i 56.8 5.4E+02 0.012 33.1 48.2 52 597-650 501-552 (908)
138 KOG4674 Uncharacterized conser 56.7 7.6E+02 0.016 34.8 59.4 87 790-876 677-777 (1822)
139 COG0419 SbcC ATPase involved i 56.2 5.5E+02 0.012 33.0 50.1 81 795-879 586-671 (908)
140 KOG0946 ER-Golgi vesicle-tethe 54.0 6.2E+02 0.013 32.9 24.0 120 252-409 655-774 (970)
141 PF05622 HOOK: HOOK protein; 53.3 6.9 0.00015 48.0 1.6 39 502-540 262-300 (713)
142 PF13870 DUF4201: Domain of un 52.8 1.6E+02 0.0035 30.2 11.0 96 796-901 78-174 (177)
143 COG1340 Uncharacterized archae 51.8 4.2E+02 0.0092 30.4 24.5 79 590-668 138-216 (294)
144 PF05278 PEARLI-4: Arabidopsis 51.0 67 0.0014 36.1 8.4 96 590-685 159-254 (269)
145 PF15294 Leu_zip: Leucine zipp 49.6 3.1E+02 0.0066 31.2 13.2 97 303-399 70-180 (278)
146 PF04156 IncA: IncA protein; 49.4 3.1E+02 0.0067 28.1 13.3 46 791-836 77-122 (191)
147 PRK09039 hypothetical protein; 49.2 3.4E+02 0.0074 31.2 13.9 43 705-747 141-183 (343)
148 PF01920 Prefoldin_2: Prefoldi 48.7 20 0.00044 32.8 3.5 65 760-831 34-98 (106)
149 PF08614 ATG16: Autophagy prot 47.1 1.4E+02 0.0029 31.3 9.6 150 152-323 29-183 (194)
150 PF06005 DUF904: Protein of un 47.1 1.5E+02 0.0033 27.1 8.7 59 477-546 6-64 (72)
151 KOG0018 Structural maintenance 46.5 8.7E+02 0.019 32.5 28.5 142 492-652 848-989 (1141)
152 PF11559 ADIP: Afadin- and alp 45.6 3.2E+02 0.007 27.2 11.6 42 698-745 105-149 (151)
153 KOG0980 Actin-binding protein 44.9 8.6E+02 0.019 32.0 23.3 117 661-797 503-637 (980)
154 KOG2129 Uncharacterized conser 44.8 6.5E+02 0.014 30.5 17.9 31 518-548 289-319 (552)
155 PF05377 FlaC_arch: Flagella a 44.4 82 0.0018 27.9 6.2 34 501-534 15-48 (55)
156 PF09738 DUF2051: Double stran 43.1 3.8E+02 0.0082 30.7 12.9 135 348-521 102-247 (302)
157 PF08581 Tup_N: Tup N-terminal 43.1 72 0.0016 29.7 6.1 52 802-853 4-62 (79)
158 PF12325 TMF_TATA_bd: TATA ele 42.8 2.3E+02 0.0051 28.3 10.0 71 791-861 19-92 (120)
159 PF10146 zf-C4H2: Zinc finger- 39.8 3E+02 0.0065 30.2 11.1 43 501-543 61-103 (230)
160 KOG4673 Transcription factor T 38.3 9.9E+02 0.021 30.8 32.2 124 383-546 641-764 (961)
161 PF07798 DUF1640: Protein of u 37.9 1E+02 0.0022 31.8 7.0 50 690-739 19-68 (177)
162 TIGR00634 recN DNA repair prot 37.2 8.4E+02 0.018 29.6 21.0 39 363-401 166-204 (563)
163 PF04420 CHD5: CHD5-like prote 37.2 40 0.00086 34.5 3.9 57 349-407 38-94 (161)
164 PF15294 Leu_zip: Leucine zipp 37.1 3.2E+02 0.0069 31.1 11.0 35 512-546 130-171 (278)
165 KOG0804 Cytoplasmic Zn-finger 36.7 2.2E+02 0.0048 34.3 10.1 36 482-517 417-452 (493)
166 PF05911 DUF869: Plant protein 36.5 7E+02 0.015 32.1 14.9 141 362-537 21-162 (769)
167 PF05667 DUF812: Protein of un 36.4 9.5E+02 0.021 30.0 25.1 21 464-484 512-532 (594)
168 PF10224 DUF2205: Predicted co 36.3 43 0.00092 31.4 3.6 50 303-363 14-63 (80)
169 PF10481 CENP-F_N: Cenp-F N-te 36.1 4.8E+02 0.01 29.9 12.0 69 619-687 13-81 (307)
170 PF04156 IncA: IncA protein; 36.0 2.3E+02 0.0049 29.1 9.1 61 782-842 110-170 (191)
171 PF04111 APG6: Autophagy prote 35.7 2.5E+02 0.0054 31.9 10.1 124 382-543 12-135 (314)
172 KOG0804 Cytoplasmic Zn-finger 35.2 4.9E+02 0.011 31.6 12.5 55 262-323 383-446 (493)
173 PF09755 DUF2046: Uncharacteri 34.7 7.8E+02 0.017 28.5 22.9 224 485-753 51-285 (310)
174 COG3074 Uncharacterized protei 34.6 2E+02 0.0044 26.8 7.4 67 599-668 6-76 (79)
175 COG4942 Membrane-bound metallo 34.4 9E+02 0.02 29.1 15.1 154 591-747 39-207 (420)
176 PRK10698 phage shock protein P 33.0 6.6E+02 0.014 27.2 15.5 200 588-832 4-217 (222)
177 PF05266 DUF724: Protein of un 32.8 6.4E+02 0.014 27.0 13.3 134 682-850 50-186 (190)
178 COG3883 Uncharacterized protei 32.5 1.4E+02 0.0031 33.5 7.4 66 786-851 43-108 (265)
179 PF15035 Rootletin: Ciliary ro 32.3 6.4E+02 0.014 26.8 13.3 38 372-409 2-39 (182)
180 COG2433 Uncharacterized conser 32.1 3.5E+02 0.0075 33.9 10.9 93 803-913 416-508 (652)
181 KOG2391 Vacuolar sorting prote 31.2 72 0.0016 37.0 5.0 67 702-772 236-302 (365)
182 PF03195 DUF260: Protein of un 29.6 54 0.0012 31.7 3.2 81 83-169 20-100 (101)
183 PRK15422 septal ring assembly 29.3 2.8E+02 0.0062 26.3 7.6 70 599-668 6-76 (79)
184 PF12709 Kinetocho_Slk19: Cent 29.2 2.1E+02 0.0045 27.5 6.8 47 494-543 39-85 (87)
185 PF15619 Lebercilin: Ciliary p 29.0 7.4E+02 0.016 26.5 18.4 143 232-402 46-194 (194)
186 cd00632 Prefoldin_beta Prefold 28.8 85 0.0018 29.7 4.4 77 748-834 26-102 (105)
187 PF05546 She9_MDM33: She9 / Md 28.8 6.1E+02 0.013 27.8 11.1 80 598-681 10-89 (207)
188 PF03962 Mnd1: Mnd1 family; I 28.4 4.4E+02 0.0096 27.9 9.9 45 788-835 103-147 (188)
189 PF08317 Spc7: Spc7 kinetochor 28.1 9.2E+02 0.02 27.3 13.6 76 456-531 186-261 (325)
190 COG1842 PspA Phage shock prote 27.7 8.5E+02 0.018 26.8 13.0 127 588-747 4-131 (225)
191 PF12718 Tropomyosin_1: Tropom 27.6 3E+02 0.0065 28.0 8.2 54 619-672 9-62 (143)
192 PRK10884 SH3 domain-containing 27.1 4.1E+02 0.0089 28.7 9.5 44 501-544 119-162 (206)
193 PF02403 Seryl_tRNA_N: Seryl-t 27.1 3.7E+02 0.008 25.3 8.2 40 779-818 27-66 (108)
194 PF07795 DUF1635: Protein of u 27.0 1.4E+02 0.0031 32.6 6.1 26 519-544 31-56 (214)
195 KOG0964 Structural maintenance 26.9 1.7E+03 0.036 30.0 30.8 39 508-546 950-995 (1200)
196 PF04849 HAP1_N: HAP1 N-termin 26.9 1E+03 0.023 27.5 19.9 181 218-431 63-302 (306)
197 KOG3215 Uncharacterized conser 26.3 1.6E+02 0.0036 32.1 6.3 46 797-842 77-122 (222)
198 PLN02939 transferase, transfer 26.2 1.7E+03 0.036 29.7 16.7 47 589-651 350-396 (977)
199 TIGR00634 recN DNA repair prot 25.9 1.3E+03 0.027 28.2 21.4 40 500-540 182-221 (563)
200 PF15290 Syntaphilin: Golgi-lo 25.2 5.3E+02 0.011 29.7 10.1 49 229-277 64-117 (305)
201 PF03962 Mnd1: Mnd1 family; I 24.9 6.9E+02 0.015 26.5 10.6 49 764-814 47-95 (188)
202 COG1382 GimC Prefoldin, chaper 24.6 4E+02 0.0088 26.9 8.2 102 708-836 10-111 (119)
203 PRK03947 prefoldin subunit alp 24.5 6.9E+02 0.015 24.6 10.5 54 699-763 11-64 (140)
204 KOG0994 Extracellular matrix g 23.7 2.1E+03 0.045 29.9 38.9 47 363-409 1209-1255(1758)
205 TIGR02338 gimC_beta prefoldin, 23.6 1.2E+02 0.0026 29.0 4.4 75 749-833 31-105 (110)
206 PF15082 DUF4549: Domain of un 23.1 3.3E+02 0.0072 28.2 7.4 23 350-372 70-92 (144)
207 KOG4809 Rab6 GTPase-interactin 22.5 1.6E+03 0.035 28.2 24.7 279 215-550 253-543 (654)
208 PRK10869 recombination and rep 22.3 1.5E+03 0.032 27.8 20.5 63 479-542 154-219 (553)
209 KOG0249 LAR-interacting protei 22.1 1.3E+03 0.028 29.9 13.3 47 249-296 107-153 (916)
210 PRK10884 SH3 domain-containing 22.0 3.4E+02 0.0073 29.4 7.7 48 700-747 82-129 (206)
211 smart00787 Spc7 Spc7 kinetocho 22.0 1.2E+03 0.027 26.6 13.3 78 450-527 175-252 (312)
212 KOG0946 ER-Golgi vesicle-tethe 21.9 1.9E+03 0.042 28.9 20.4 57 468-532 901-957 (970)
213 PF06632 XRCC4: DNA double-str 21.0 6.5E+02 0.014 29.3 10.1 71 501-611 138-208 (342)
214 KOG4253 Tryptophan-rich basic 20.7 1.9E+02 0.0041 30.6 5.3 40 359-398 45-89 (175)
215 PRK09343 prefoldin subunit bet 20.5 5.1E+02 0.011 25.5 8.1 22 761-782 44-65 (121)
216 TIGR02338 gimC_beta prefoldin, 20.3 7.7E+02 0.017 23.6 9.5 99 628-747 7-106 (110)
No 1
>PLN03188 kinesin-12 family protein; Provisional
Probab=100.00 E-value=4.3e-45 Score=434.18 Aligned_cols=170 Identities=58% Similarity=0.856 Sum_probs=156.1
Q ss_pred CCCCCCccceeEEEEEEEeec--CCCcceeeeeeEEEEecCCCCCcCCCCcchhhhhHhhhhhhchhHHHHHHHHHHhhc
Q 002212 1 MNRASSRSHSVFTCIIESKWE--SQGVTHHRFARLNLVDLAGSERQKSSGAEGERLKEATNINKSLSTLGLVIMNLVSIS 78 (953)
Q Consensus 1 MN~~SSRSHAIFTI~Ieqk~~--~~g~~~~r~SKL~LVDLAGSER~~kTgAeGeRLKEA~nINKSLsALG~VI~ALss~s 78 (953)
||..|||||+||||+|.+... .++....+.|+|+|||||||||.+.+++.|.+++||++||+||++||+||.+|+..+
T Consensus 297 mN~~SSRSHaIFtI~Ves~~k~~~dg~ss~r~SkLnLVDLAGSER~kkTga~G~RLkEA~~INKSLsaLGnVI~ALae~S 376 (1320)
T PLN03188 297 INAESSRSHSVFTCVVESRCKSVADGLSSFKTSRINLVDLAGSERQKLTGAAGDRLKEAGNINRSLSQLGNLINILAEIS 376 (1320)
T ss_pred CCCccCCCceeEEEEEEEeecccCCCCcceEEEEEEEEECCCchhccccCcccHHHHHHHHHhHHHHHHHHHHHHHHHhh
Confidence 799999999999999987643 344455678999999999999999999999999999999999999999999998644
Q ss_pred -CCCCCCcCCCCchhhhhhhhccCCCcceeEEeecCCCCcchhhhhhHhhhHHHhhccccccccccCCchhHHHHHHHHH
Q 002212 79 -NGKSLHVPYRDSKLTFLLQDSLGGNSKTIIIANISPSSCCSLETLSTLKFAQRAKFIKNNAIVNEDASGDVIAMRMEIQ 157 (953)
Q Consensus 79 -~gk~~HVPYRDSKLTrLLQDSLGGNSKT~mIa~VSPs~~~~eETLSTLrFAsRAK~IKNkpvVNed~s~dv~~Lr~eIq 157 (953)
.++..||||||||||+||+|+|||||+|+|||||||+..++.||++||+||+||+.|+|.|++|....+++..++..|.
T Consensus 377 q~gk~~HIPYRDSKLTrLLQDSLGGNSKTvMIa~VSPs~~~~eETLSTLrFAsRAK~IKNkpvvNe~~~~~vn~LrelIr 456 (1320)
T PLN03188 377 QTGKQRHIPYRDSRLTFLLQESLGGNAKLAMVCAISPSQSCKSETFSTLRFAQRAKAIKNKAVVNEVMQDDVNFLREVIR 456 (1320)
T ss_pred ccCCCCcCCCCcchHHHHHHHhcCCCceEEEEEecCCchhhHHHHHHHHHHHHHHhhcCccceeccchhhhHHHHHHHHH
Confidence 4567899999999999999999999999999999999999999999999999999999999999998888878889999
Q ss_pred HHHHHHHHHHhhh
Q 002212 158 QLKKEVSRLRGIA 170 (953)
Q Consensus 158 ~LK~ELsrLR~~l 170 (953)
+|+.|+.+|+...
T Consensus 457 ~Lk~EL~rLK~~~ 469 (1320)
T PLN03188 457 QLRDELQRVKANG 469 (1320)
T ss_pred HHHHHHHHHHHhc
Confidence 9999999998653
No 2
>KOG0243 consensus Kinesin-like protein [Cytoskeleton]
Probab=100.00 E-value=7e-42 Score=403.32 Aligned_cols=440 Identities=29% Similarity=0.370 Sum_probs=264.7
Q ss_pred CCCCCCccceeEEEEEEEeecC-CCcceeeeeeEEEEecCCCCCcCCCCcchhhhhHhhhhhhchhHHHHHHHHHHhhcC
Q 002212 1 MNRASSRSHSVFTCIIESKWES-QGVTHHRFARLNLVDLAGSERQKSSGAEGERLKEATNINKSLSTLGLVIMNLVSISN 79 (953)
Q Consensus 1 MN~~SSRSHAIFTI~Ieqk~~~-~g~~~~r~SKL~LVDLAGSER~~kTgAeGeRLKEA~nINKSLsALG~VI~ALss~s~ 79 (953)
||..|||||+||+|+|..+... .|..-++.|+|+||||||||.++++|+.+.|.+||+.||+||.|||+||.||++
T Consensus 259 ~N~~SSRSHsIFsItvhike~t~~geelvK~GKLNLVDLAGSENI~RSGA~~~RArEAG~INqSLLTLGRVInALVe--- 335 (1041)
T KOG0243|consen 259 MNDQSSRSHSIFSITVHIKENTPEGEELVKIGKLNLVDLAGSENISRSGARNGRAREAGEINQSLLTLGRVINALVE--- 335 (1041)
T ss_pred hhhhccccceEEEEEEEEecCCCcchhhHhhcccceeeccccccccccccccchhHHhhhhhHHHHHHHHHHHHHHc---
Confidence 8999999999999999877543 344567789999999999999999999999999999999999999999999997
Q ss_pred CCCCCcCCCCchhhhhhhhccCCCcceeEEeecCCCCcchhhhhhHhhhHHHhhccccccccccCCchhHHHHHHHHHHH
Q 002212 80 GKSLHVPYRDSKLTFLLQDSLGGNSKTIIIANISPSSCCSLETLSTLKFAQRAKFIKNNAIVNEDASGDVIAMRMEIQQL 159 (953)
Q Consensus 80 gk~~HVPYRDSKLTrLLQDSLGGNSKT~mIa~VSPs~~~~eETLSTLrFAsRAK~IKNkpvVNed~s~dv~~Lr~eIq~L 159 (953)
+.+|||||+|||||||||||||.++|+|||||||+..+++||+|||.||.|||.|+|+|.+|.....++. ++.|
T Consensus 336 -~s~HIPYRESKLTRLLQDSLGGkTKT~iIATiSPa~~~lEETlSTLEYA~RAKnIkNKPevNQkl~K~~l-----lKd~ 409 (1041)
T KOG0243|consen 336 -HSGHIPYRESKLTRLLQDSLGGKTKTCIIATISPAKHNLEETLSTLEYAHRAKNIKNKPEVNQKLMKKTL-----LKDL 409 (1041)
T ss_pred -cCCCCCchHHHHHHHHHHHhCCCceeEEEEEeCCCcccHHHHHHHHHHHHHhhhccCCCccchHHHHHHH-----HHHH
Confidence 5669999999999999999999999999999999999999999999999999999999999988776654 4445
Q ss_pred HHHHHHHHhhhcCCCCccCCCCCCCCCCCCCCCCcccccccccCcchhhhhhhhhhhHHHHHHHHhhhhhhhHHHHHHHH
Q 002212 160 KKEVSRLRGIAHGGAESLVNDSPTVSFPGSPGSIKWEGLHESFSPLISDKRMSQKKDYELALVGAFRREKEKDISLQALA 239 (953)
Q Consensus 160 K~ELsrLR~~l~~~~e~~~~~~~~~s~~~spg~~~~~~l~~~~s~l~~~~r~~q~~~~e~~lv~a~RrekEke~~LkkL~ 239 (953)
-.|+.+|+..+....+. .|.+.+ .. .|- .-.+.-+.....++++.
T Consensus 410 ~~EIerLK~dl~AaReK----------------------nGvyis---ee------~y~----~~e~e~~~~~~~ieele 454 (1041)
T KOG0243|consen 410 YEEIERLKRDLAAAREK----------------------NGVYIS---EE------RYT----QEEKEKKEMAEQIEELE 454 (1041)
T ss_pred HHHHHHHHHHHHHhHhh----------------------CceEec---hH------HHH----HHHHHHHHHHHHHHHHH
Confidence 55555554443221111 011111 00 010 00011123344555555
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHhhcCCCchhhhHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHH
Q 002212 240 AENQAALRLAKQREDEIQGLKMRLRFREAGIKRLEAVASGKISAETHLLKEKEECLKEIESFYEGGEREMMSQQIMVLQN 319 (953)
Q Consensus 240 aEle~~~~Lv~qREeeiqs~KM~LRfREdkI~rLE~l~~g~~sae~~Ll~Ene~L~eEIq~LqeegERE~lleeIs~Lqd 319 (953)
.+++.+...+.+..+.... ++.-. ..|..+...++..++. -..+.+.+.+++..++.
T Consensus 455 ~el~~~~~~l~~~~e~~~~---~~~~~------------------~~l~~~~~~~k~~L~~--~~~el~~~~ee~~~~~~ 511 (1041)
T KOG0243|consen 455 EELENLEKQLKDLTELYMN---QLEIK------------------ELLKEEKEKLKSKLQN--KNKELESLKEELQQAKA 511 (1041)
T ss_pred HHHHHHHHHHHHHHHHHhh---HHHHH------------------HHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHH
Confidence 5555544444333322211 00000 0122222222222221 12233444444555555
Q ss_pred HHHH---HhhHhhhccCCccccCCCCCCCcccchhhhHHHHHHHHhhHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHh
Q 002212 320 KLLE---ALDWKLMHESDSSAVQEPGSPWRTSVNEENEFLRMQAIHNQAEMETLRKQLEFSLDEKEKLERHVSDLVKKLE 396 (953)
Q Consensus 320 ~Lle---~ld~k~~~e~~~v~~~~~~~~~~~s~~~Ene~Lr~~~~~~~~El~~~~k~l~~clEen~kl~r~i~~L~~el~ 396 (953)
.|.+ +++.. +..+ ..+..-+.-||.++...++++..+..+++.-.-.+..=+.-++.++.+|-
T Consensus 512 ~l~~~e~ii~~~--~~se------------~~l~~~a~~l~~~~~~s~~d~s~l~~kld~~~~~~d~n~~~~~~~~~~l~ 577 (1041)
T KOG0243|consen 512 TLKEEEEIISQQ--EKSE------------EKLVDRATKLRRSLEESQDDLSSLFEKLDRKDRLDDDNQEVIDDFQSQLS 577 (1041)
T ss_pred HHHHHHHHHHHH--HHHH------------HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhccccccHHHHHHHhhhhh
Confidence 4322 11111 1100 11223356677788888888888888877655444444444555554444
Q ss_pred hccCchhhhhhhhcccccCCCccccchhh-HHHHHHHHHHHHhhhhHHHhhhhhhhccccch--hhHHHHHHHHhhhhhh
Q 002212 397 EQTCPISAKEETQGFQLSTNVPTINFDDQ-VELKTMVDAIAVASQREAEAHQTAIGLSKMHD--ELRLELEVLNKEKSEF 473 (953)
Q Consensus 397 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~q-~e~kt~v~aia~asq~~~e~~~~~i~l~k~~~--~~~~~~e~~~~~~~e~ 473 (953)
..-+.+...-+.. ...| .-|++|.-- ++.-..+|.++.+.-+.+. .-.++-++..-.++..
T Consensus 578 ~~~~~~~~~v~~~------------~s~~~~~l~~~~~~----~~s~~s~~~~~~e~~~t~~~~~r~~~~~~~e~~q~~~ 641 (1041)
T KOG0243|consen 578 ENLSTLHGLVASS------------SSQQISQLTTMLAQ----MESFLSAKSKATEIMKTKISKDRDILSEVLESLQQLQ 641 (1041)
T ss_pred HHHHHHHHHHhhh------------hhhHHHHHHHHHhh----hHHHhhhhccchhhhhhhhhhHHHHHHHHHHHHHHHH
Confidence 3322221111100 0011 112222211 1333444545555444322 2245667788888888
Q ss_pred hhccHHHHHHHHHHHHhhh-hhhHHHHHH---HHHHHHHHHHHHHHHHHhHHHHHHHhhHHHHHhhhHHHHHHH
Q 002212 474 NKLNDELQLKHKVLIEEKS-NLIELYERK---EMEMKREAENLELQLAEMNEENEKLLGLYEKAMQERDEFKRM 543 (953)
Q Consensus 474 ~~ln~e~~~~~~~l~e~~~-~l~~~~~~~---~~~~~~~~~~L~~ql~e~~~en~kl~~lye~am~e~d~~~r~ 543 (953)
..|+..++..++.+..+.- ++.++=... -+....-.++++-.|. .-+.+|.||-. |||.++-+.
T Consensus 642 ~~~k~~~~s~l~~i~s~~~~~~~~~~~~l~~~~~~~~~~~~~i~~~l~----~q~~~~~l~~~--qe~~~~~~~ 709 (1041)
T KOG0243|consen 642 EVLKKDSESCLEVINSSITSSINELESMLETIANTADDLLQNISSRLS----NQQEILSLFAN--QELQELVLS 709 (1041)
T ss_pred HHHhhhHHHHHHHHhccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHh----hhhhHHHHhhH--HHHHHHHHH
Confidence 8888899999988887544 444432221 1333334444444444 34467888877 777774333
No 3
>KOG0245 consensus Kinesin-like protein [Cytoskeleton]
Probab=100.00 E-value=7.2e-46 Score=431.56 Aligned_cols=168 Identities=52% Similarity=0.769 Sum_probs=156.8
Q ss_pred CCCCCCccceeEEEEEEEeecCC--CcceeeeeeEEEEecCCCCCcCCCCcchhhhhHhhhhhhchhHHHHHHHHHHhhc
Q 002212 1 MNRASSRSHSVFTCIIESKWESQ--GVTHHRFARLNLVDLAGSERQKSSGAEGERLKEATNINKSLSTLGLVIMNLVSIS 78 (953)
Q Consensus 1 MN~~SSRSHAIFTI~Ieqk~~~~--g~~~~r~SKL~LVDLAGSER~~kTgAeGeRLKEA~nINKSLsALG~VI~ALss~s 78 (953)
||+.|||||+||||.+.++.... |....++|+|+|||||||||+..+|+.|+|++||.+|||||+|||+||.||++.+
T Consensus 209 MNdtSSRSHaVFtIvftQk~~~~~~~l~sek~SKIsLVDLAGSERasstGa~G~RLKEGa~INKSLtTLGkVISALAe~~ 288 (1221)
T KOG0245|consen 209 MNDTSSRSHAVFTIVFTQKKHDQDTGLDSEKVSKISLVDLAGSERASSTGANGDRLKEGANINKSLTTLGKVISALAESQ 288 (1221)
T ss_pred cccccccceeEEEEEEEeeeccccCCCcceeeeeeeEEeccCcccccccCCCccchhcccccchHHHHHHHHHHHHHHHh
Confidence 99999999999999999976544 3446788999999999999999999999999999999999999999999999876
Q ss_pred C---CCCCCcCCCCchhhhhhhhccCCCcceeEEeecCCCCcchhhhhhHhhhHHHhhccccccccccCCchhHHHHHHH
Q 002212 79 N---GKSLHVPYRDSKLTFLLQDSLGGNSKTIIIANISPSSCCSLETLSTLKFAQRAKFIKNNAIVNEDASGDVIAMRME 155 (953)
Q Consensus 79 ~---gk~~HVPYRDSKLTrLLQDSLGGNSKT~mIa~VSPs~~~~eETLSTLrFAsRAK~IKNkpvVNed~s~dv~~Lr~e 155 (953)
+ +++.+||||||.|||||+++|||||||+|||++||+..+|+|||||||||.|||.|+|+++||+|+...+
T Consensus 289 ~~k~~ks~fIPYRDSVLTWLLkEnLGGNSKTaMIAAlSPAdiNyeETLSTLRYAdRAK~Iv~~avVNEdpnaKL------ 362 (1221)
T KOG0245|consen 289 KGKKKKSDFIPYRDSVLTWLLKENLGGNSKTAMIAALSPADINYEETLSTLRYADRAKQIVNNAVVNEDPNAKL------ 362 (1221)
T ss_pred ccCCCCCccccchHHHHHHHHHHhcCCcchhhhhhccChhhcChHHHHHHHHHhhHhhhhhccceeCCCccHHH------
Confidence 5 4566999999999999999999999999999999999999999999999999999999999999999977
Q ss_pred HHHHHHHHHHHHhhhcCCC
Q 002212 156 IQQLKKEVSRLRGIAHGGA 174 (953)
Q Consensus 156 Iq~LK~ELsrLR~~l~~~~ 174 (953)
|+.|++|+.+||..+.+.+
T Consensus 363 IRELreEv~rLksll~~~~ 381 (1221)
T KOG0245|consen 363 IRELREEVARLKSLLRAQG 381 (1221)
T ss_pred HHHHHHHHHHHHHHHhccc
Confidence 8999999999999987654
No 4
>KOG4280 consensus Kinesin-like protein [Cytoskeleton]
Probab=100.00 E-value=4.2e-45 Score=414.83 Aligned_cols=163 Identities=63% Similarity=0.802 Sum_probs=145.3
Q ss_pred CCCCCCccceeEEEEEEE-eecCCCcceeeeeeEEEEecCCCCCcCCCCcchhhhhHhhhhhhchhHHHHHHHHHHhhcC
Q 002212 1 MNRASSRSHSVFTCIIES-KWESQGVTHHRFARLNLVDLAGSERQKSSGAEGERLKEATNINKSLSTLGLVIMNLVSISN 79 (953)
Q Consensus 1 MN~~SSRSHAIFTI~Ieq-k~~~~g~~~~r~SKL~LVDLAGSER~~kTgAeGeRLKEA~nINKSLsALG~VI~ALss~s~ 79 (953)
||.+|||||+||||+|++ .....|....+.|+|||||||||||+.++|+.|.|++||++||+||++||+||.+|++
T Consensus 204 mn~~SsRSH~ift~~i~~~~~~~~~~~~~~~~rlnlvDLagsEr~~~tga~G~rlkEa~~IN~SLs~LG~vI~aLvd--- 280 (574)
T KOG4280|consen 204 MNEESSRSHAIFTIHIESSEKSDGGLMSGRSSKLNLVDLAGSERQSKTGAEGERLKEATNINLSLSALGNVISALVD--- 280 (574)
T ss_pred CCcccccceEEEEEEEEeecccCCCccccccceeeeeeccchhhhcccCccchhhhhhcccchhHHHHHHHHHHHhc---
Confidence 899999999999999999 4446677788999999999999999999999999999999999999999999999986
Q ss_pred CCCCCcCCCCchhhhhhhhccCCCcceeEEeecCCCCcchhhhhhHhhhHHHhhccccccccccCCch-hHHHHHHHHHH
Q 002212 80 GKSLHVPYRDSKLTFLLQDSLGGNSKTIIIANISPSSCCSLETLSTLKFAQRAKFIKNNAIVNEDASG-DVIAMRMEIQQ 158 (953)
Q Consensus 80 gk~~HVPYRDSKLTrLLQDSLGGNSKT~mIa~VSPs~~~~eETLSTLrFAsRAK~IKNkpvVNed~s~-dv~~Lr~eIq~ 158 (953)
++..||||||||||+||||||||||+|+|||||+|+..++.||++||+||+|||.|+|+|++|+++.. .+..++.+|+.
T Consensus 281 ~~~~HIPYRdSkLT~LLqdSLGGN~kT~mianvsp~~~~~~ETlsTLrfA~Rak~I~nk~~ined~~~~~~~~lq~ei~~ 360 (574)
T KOG4280|consen 281 GSKTHIPYRDSKLTRLLQDSLGGNSKTTMIANVSPSSDNYEETLSTLRFAQRAKAIKNKPVINEDPKDALLRELQEEIER 360 (574)
T ss_pred cccCCCCcchhHHHHHHHHHcCCCceEEEEEecCchhhhhHHHHHHHHHHHHHHHhhccccccCCcchhhHHHHHHHHHH
Confidence 44449999999999999999999999999999999999999999999999999999999999999994 44444444555
Q ss_pred HHHHHHHH
Q 002212 159 LKKEVSRL 166 (953)
Q Consensus 159 LK~ELsrL 166 (953)
|+.++...
T Consensus 361 Lk~~l~~~ 368 (574)
T KOG4280|consen 361 LKKELDPG 368 (574)
T ss_pred HHHhhccc
Confidence 54444433
No 5
>KOG0240 consensus Kinesin (SMY1 subfamily) [Cytoskeleton]
Probab=100.00 E-value=2.2e-40 Score=371.15 Aligned_cols=148 Identities=51% Similarity=0.655 Sum_probs=137.5
Q ss_pred CCCCCCccceeEEEEEEEeecCCCcceeeeeeEEEEecCCCCCcCCCCcchhhhhHhhhhhhchhHHHHHHHHHHhhcCC
Q 002212 1 MNRASSRSHSVFTCIIESKWESQGVTHHRFARLNLVDLAGSERQKSSGAEGERLKEATNINKSLSTLGLVIMNLVSISNG 80 (953)
Q Consensus 1 MN~~SSRSHAIFTI~Ieqk~~~~g~~~~r~SKL~LVDLAGSER~~kTgAeGeRLKEA~nINKSLsALG~VI~ALss~s~g 80 (953)
||.+|||||+||+|+|.+.+..++ ..+.|+|+||||||||++.++|+.|.-+.||.+||+||+|||+||++|++ |
T Consensus 202 mn~~sSRSHsIF~i~VkQ~n~e~~--~~~~gkLyLVDLaGSEkvsKtga~g~vleEaK~INkSLsaLgnvI~aLa~---g 276 (607)
T KOG0240|consen 202 MNEHSSRSHSIFLIHVKQENVEDK--RKLSGKLYLVDLAGSEKVSKTGAEGAVLEEAKNINKSLSALGNVINALAE---G 276 (607)
T ss_pred ccccccccceEEEEEEEeccccch--hhccccEEEEEcccccccCCCCccchhHHHHhhhhhhHHHHHHHHHHHhc---C
Confidence 899999999999999999766544 35779999999999999999999999999999999999999999999974 6
Q ss_pred CCCCcCCCCchhhhhhhhccCCCcceeEEeecCCCCcchhhhhhHhhhHHHhhccccccccccCCchhHHHHH
Q 002212 81 KSLHVPYRDSKLTFLLQDSLGGNSKTIIIANISPSSCCSLETLSTLKFAQRAKFIKNNAIVNEDASGDVIAMR 153 (953)
Q Consensus 81 k~~HVPYRDSKLTrLLQDSLGGNSKT~mIa~VSPs~~~~eETLSTLrFAsRAK~IKNkpvVNed~s~dv~~Lr 153 (953)
+..|||||||||||||+|||||||||++|+|++|+..+..||.+||+|+.||+.|+|.+.+|.....+.+..+
T Consensus 277 ~~shipYRDSKLTRILqdSLGGNsRTtlIi~csPss~n~~ET~STl~fg~rak~ikN~v~~n~e~~~e~~~r~ 349 (607)
T KOG0240|consen 277 PKSHIPYRDSKLTRILQDSLGGNSRTTLIICCSPSSLNEAETKSTLRFGNRAKTIKNTVWVNLELTAEEWKRK 349 (607)
T ss_pred CCCCCcchhhHHHHHHHHHhCCCcceEEEEecCCccccccccccchhhccccccccchhhhhhHhhHHHHHHH
Confidence 6889999999999999999999999999999999999999999999999999999999999988877665433
No 6
>KOG0241 consensus Kinesin-like protein [Cytoskeleton]
Probab=100.00 E-value=2.3e-38 Score=364.01 Aligned_cols=166 Identities=53% Similarity=0.777 Sum_probs=154.5
Q ss_pred CCCCCCccceeEEEEEEEeec--CCCcceeeeeeEEEEecCCCCCcCCCCcchhhhhHhhhhhhchhHHHHHHHHHHhhc
Q 002212 1 MNRASSRSHSVFTCIIESKWE--SQGVTHHRFARLNLVDLAGSERQKSSGAEGERLKEATNINKSLSTLGLVIMNLVSIS 78 (953)
Q Consensus 1 MN~~SSRSHAIFTI~Ieqk~~--~~g~~~~r~SKL~LVDLAGSER~~kTgAeGeRLKEA~nINKSLsALG~VI~ALss~s 78 (953)
||..|||||+||.|.|.+.-. ..|.....+|+|.|||||||||..++|+.|.|++|++|||+||++||.||.+|++.+
T Consensus 213 mn~EssrsHaVFslvvtQ~l~D~ktg~SgeKvsklslVDLAgserasktga~g~rlkegsNinkSLttLglVIsaLadq~ 292 (1714)
T KOG0241|consen 213 MNEESSRSHAVFSLVVTQTLYDLKTGHSGEKVSKLSLVDLAGSERASKTGAAGSRLKEGSNINKSLTTLGLVISALADQK 292 (1714)
T ss_pred ccccccccceeEEEEEeeEEeccccCcchhheeeeeEEEeccccccccccchhhhhhhcCCcchhhHHHHHHHHHHHHhh
Confidence 899999999999999998643 445566678999999999999999999999999999999999999999999999877
Q ss_pred CCC--CCCcCCCCchhhhhhhhccCCCcceeEEeecCCCCcchhhhhhHhhhHHHhhccccccccccCCchhHHHHHHHH
Q 002212 79 NGK--SLHVPYRDSKLTFLLQDSLGGNSKTIIIANISPSSCCSLETLSTLKFAQRAKFIKNNAIVNEDASGDVIAMRMEI 156 (953)
Q Consensus 79 ~gk--~~HVPYRDSKLTrLLQDSLGGNSKT~mIa~VSPs~~~~eETLSTLrFAsRAK~IKNkpvVNed~s~dv~~Lr~eI 156 (953)
+|+ ..+||||||.|||||+|+|||||+|+||+||||+.++|+||+||||||.|||+|+|.++||+++...+ |
T Consensus 293 n~kgkdKfvPYrDSVLTwLLkD~LGGNsrTvMiatvSPaAdnyeeTlStLRYadrAkrIvN~avvNedpnarv------i 366 (1714)
T KOG0241|consen 293 NGKGKDKFVPYRDSVLTWLLKDNLGGNSRTVMIATVSPAADNYEETLSTLRYADRAKRIVNHAVVNEDPNARV------I 366 (1714)
T ss_pred cCCCccccccchhHHHHHHHHhhcCCCceeEEEEEecccccchHHHHHHHHHHHHHHHhhccccccCCchHHH------H
Confidence 665 67999999999999999999999999999999999999999999999999999999999999999887 7
Q ss_pred HHHHHHHHHHHhhhcC
Q 002212 157 QQLKKEVSRLRGIAHG 172 (953)
Q Consensus 157 q~LK~ELsrLR~~l~~ 172 (953)
+.|+.|+..||.++..
T Consensus 367 rElReEve~lr~qL~~ 382 (1714)
T KOG0241|consen 367 RELREEVEKLREQLEQ 382 (1714)
T ss_pred HHHHHHHHHHHHHHhh
Confidence 8999999999987643
No 7
>cd01373 KISc_KLP2_like Kinesin motor domain, KLP2-like subgroup. Members of this subgroup seem to play a role in mitosis and meiosis. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Kinesins are microtubule-dependent molecular motors that play important roles in intracellular transport and in cell division. In most kinesins, the motor domain is found at the N-terminus (N-type). N-type kinesins are (+) end-directed motors, i.e. they transport cargo towards the (+) end of the microtubule. Kinesin motor domains hydrolyze ATP at a rate of about 80 per second, and move along the microtubule at a speed of about 6400 Angstroms per second. To achieve that, kinesin head groups work in pairs. Upon replacing ADP with ATP, a kinesin motor domain increases its affinity for microtubule binding and locks in place. Also, the neck linker binds to the motor domain, which repositions the other head domain through the coiled-coil domain close to a second
Probab=100.00 E-value=1.2e-37 Score=335.71 Aligned_cols=135 Identities=74% Similarity=0.975 Sum_probs=126.9
Q ss_pred CCCCCCccceeEEEEEEEeecCCCcceeeeeeEEEEecCCCCCcCCCCcchhhhhHhhhhhhchhHHHHHHHHHHhhcCC
Q 002212 1 MNRASSRSHSVFTCIIESKWESQGVTHHRFARLNLVDLAGSERQKSSGAEGERLKEATNINKSLSTLGLVIMNLVSISNG 80 (953)
Q Consensus 1 MN~~SSRSHAIFTI~Ieqk~~~~g~~~~r~SKL~LVDLAGSER~~kTgAeGeRLKEA~nINKSLsALG~VI~ALss~s~g 80 (953)
||..|||||+||+|+|.+.....+....+.|+|+|||||||||...+++.|.+++|+++||+||++||+||.+|+...++
T Consensus 203 ~n~~SSRSH~i~~i~v~~~~~~~~~~~~~~s~l~~VDLAGSEr~~~~~~~g~~~~E~~~IN~SL~~L~~vi~aL~~~~~~ 282 (337)
T cd01373 203 MNSESSRSHAVFTCTIESWEKKASSTNIRTSRLNLVDLAGSERQKDDGAEGVRLKEAKNINKSLSTLGHVIMALVDVAHG 282 (337)
T ss_pred CCCCCCCccEEEEEEEEEeecCCCCCcEEEEEEEEEECCCCCcccccCCccHhhhhhccccHHHHHHHHHHHHHHhhccC
Confidence 79999999999999999876655555667899999999999999999999999999999999999999999999876666
Q ss_pred CCCCcCCCCchhhhhhhhccCCCcceeEEeecCCCCcchhhhhhHhhhHHHhhcc
Q 002212 81 KSLHVPYRDSKLTFLLQDSLGGNSKTIIIANISPSSCCSLETLSTLKFAQRAKFI 135 (953)
Q Consensus 81 k~~HVPYRDSKLTrLLQDSLGGNSKT~mIa~VSPs~~~~eETLSTLrFAsRAK~I 135 (953)
+..||||||||||+||+|+|||||+|+|||||||+..+++||++||+||+|||.|
T Consensus 283 ~~~~ipyR~SkLT~lL~dsLggns~t~~I~~vsP~~~~~~eTl~TL~fa~rak~I 337 (337)
T cd01373 283 KQRHVPYRDSKLTFLLRDSLGGNAKTTIIANVSPSSKCFGETLSTLKFAQRAKLI 337 (337)
T ss_pred CCCccCCcccHHHHHHHHhcCCCceEEEEEEECCCcccHHHHHHHHHHHHHhhcC
Confidence 7889999999999999999999999999999999999999999999999999986
No 8
>KOG0242 consensus Kinesin-like protein [Cytoskeleton]
Probab=100.00 E-value=7.8e-38 Score=363.80 Aligned_cols=162 Identities=51% Similarity=0.702 Sum_probs=141.3
Q ss_pred CCCCCCccceeEEEEEEEeecCCCcceeeeeeEEEEecCCCCCcCCCCcchhhhhHhhhhhhchhHHHHHHHHHHhhcCC
Q 002212 1 MNRASSRSHSVFTCIIESKWESQGVTHHRFARLNLVDLAGSERQKSSGAEGERLKEATNINKSLSTLGLVIMNLVSISNG 80 (953)
Q Consensus 1 MN~~SSRSHAIFTI~Ieqk~~~~g~~~~r~SKL~LVDLAGSER~~kTgAeGeRLKEA~nINKSLsALG~VI~ALss~s~g 80 (953)
||..|||||+||+|+|.+.....+ . +.|+|+|||||||||+.+|++.|.|++||++||+||++||+||.+|++ +.
T Consensus 202 ~N~~SSRSHaIl~i~i~s~~~~~~-~--~~s~L~lIDLAGSERas~T~~~G~RlkEG~~INrSLlaLgtVI~~Ls~--~~ 276 (675)
T KOG0242|consen 202 LNEQSSRSHAILRITVESRGREAS-S--RVSKLNLIDLAGSERASRTGNEGVRLKEGAHINRSLLALGTVINKLSE--GK 276 (675)
T ss_pred cccccchhhheeeEEEEecccccc-c--hhheehhhhhhhhhhhhhhhccceeccccchhhHHHHHHHHHHHHHcc--cc
Confidence 799999999999999999765544 2 779999999999999999999999999999999999999999999964 22
Q ss_pred CCCCcCCCCchhhhhhhhccCCCcceeEEeecCCCCcchhhhhhHhhhHHHhhccccccccccCCchhHH--HHHHHHHH
Q 002212 81 KSLHVPYRDSKLTFLLQDSLGGNSKTIIIANISPSSCCSLETLSTLKFAQRAKFIKNNAIVNEDASGDVI--AMRMEIQQ 158 (953)
Q Consensus 81 k~~HVPYRDSKLTrLLQDSLGGNSKT~mIa~VSPs~~~~eETLSTLrFAsRAK~IKNkpvVNed~s~dv~--~Lr~eIq~ 158 (953)
...|||||||||||||||+|||||+|+|||||+|+..+|+||.+||+||+||+.|++++.+|........ .++.+|..
T Consensus 277 ~~~hipYRDSKLTRiLq~sLgGn~rt~~I~tisp~~~~~~eT~nTL~fAsrak~i~~~~~~n~~~~~~~~~~~~~~~i~~ 356 (675)
T KOG0242|consen 277 RPRHIPYRDSKLTRLLQDSLGGNARTAIIATISPSSSHYEETKNTLKFASRAKEITTKAQVNVILSDKALLKYLQREIAE 356 (675)
T ss_pred ccCCCCccccHHHHhchhhcCCCccEEEEEEeCchhhHHHHHHHHHHHHHHhhhcccccccceecchhhhhHHHHHHHHH
Confidence 4559999999999999999999999999999999999999999999999999999999999987655433 22345555
Q ss_pred HHHHHHHHH
Q 002212 159 LKKEVSRLR 167 (953)
Q Consensus 159 LK~ELsrLR 167 (953)
|+.++..++
T Consensus 357 l~~e~~~~~ 365 (675)
T KOG0242|consen 357 LEAELERLK 365 (675)
T ss_pred HHHHHHhhc
Confidence 665555544
No 9
>cd01365 KISc_KIF1A_KIF1B Kinesin motor domain, KIF1_like proteins. KIF1A (Unc104) transports synaptic vesicles to the nerve terminal, KIF1B has been implicated in transport of mitochondria. Both proteins are expressed in neurons. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Kinesins are microtubule-dependent molecular motors that play important roles in intracellular transport and in cell division. In most kinesins, the motor domain is found at the N-terminus (N-type). N-type kinesins are (+) end-directed motors, i.e. they transport cargo towards the (+) end of the microtubule. In contrast to the majority of dimeric kinesins, most KIF1A/Unc104 kinesins are monomeric motors. A lysine-rich loop in KIF1A binds to the negatively charged C-terminus of tubulin and compensates for the lack of a second motor domain, allowing KIF1A to move processively.
Probab=100.00 E-value=1.8e-35 Score=320.27 Aligned_cols=142 Identities=57% Similarity=0.783 Sum_probs=130.7
Q ss_pred CCCCCCccceeEEEEEEEeecCC--CcceeeeeeEEEEecCCCCCcCCCCcchhhhhHhhhhhhchhHHHHHHHHHHhhc
Q 002212 1 MNRASSRSHSVFTCIIESKWESQ--GVTHHRFARLNLVDLAGSERQKSSGAEGERLKEATNINKSLSTLGLVIMNLVSIS 78 (953)
Q Consensus 1 MN~~SSRSHAIFTI~Ieqk~~~~--g~~~~r~SKL~LVDLAGSER~~kTgAeGeRLKEA~nINKSLsALG~VI~ALss~s 78 (953)
||..|||||+||+|+|.+..... +......|+|+|||||||||...++..|.+++|+.+||+||++|++||.+|+...
T Consensus 209 ~n~~SSRSH~i~~l~v~~~~~~~~~~~~~~~~s~l~~VDLAGsEr~~~~~~~~~~~~E~~~IN~SL~aL~~vi~~l~~~~ 288 (356)
T cd01365 209 MNDTSSRSHAVFTIVLTQKKLDKETDLTTEKVSKISLVDLAGSERASSTGAEGDRLKEGSNINKSLTTLGKVISALADNS 288 (356)
T ss_pred CCCCcCCceEEEEEEEEEEecccCCCCCceEEEEEEeeecccccccccccccchhhHHHHHHhHHHHHHHHHHHHHHhcc
Confidence 69999999999999999876542 3445677999999999999999999999999999999999999999999998654
Q ss_pred C----CCCCCcCCCCchhhhhhhhccCCCcceeEEeecCCCCcchhhhhhHhhhHHHhhccccccccc
Q 002212 79 N----GKSLHVPYRDSKLTFLLQDSLGGNSKTIIIANISPSSCCSLETLSTLKFAQRAKFIKNNAIVN 142 (953)
Q Consensus 79 ~----gk~~HVPYRDSKLTrLLQDSLGGNSKT~mIa~VSPs~~~~eETLSTLrFAsRAK~IKNkpvVN 142 (953)
. ++..||||||||||+||+|+|||||+|+||+||+|+..+++||++||+||++++.|+|.|++|
T Consensus 289 ~~~~~~~~~~ipyR~SkLT~lL~~~lgg~s~t~~I~~vsp~~~~~~eTl~tL~fa~~~~~i~~~~~~~ 356 (356)
T cd01365 289 SAKSKKKSSFIPYRDSVLTWLLKENLGGNSKTAMIATISPADINYEETLSTLRYADRAKKIVNVAVVN 356 (356)
T ss_pred cccccCCCCcCCCcCcHHHHHHHHhcCCCceEEEEEEeCCCcccHHHHHHHHHHHHHHhhccCccccC
Confidence 2 356899999999999999999999999999999999999999999999999999999999987
No 10
>cd01364 KISc_BimC_Eg5 Kinesin motor domain, BimC/Eg5 spindle pole proteins, participate in spindle assembly and chromosome segregation during cell division. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Kinesins are microtubule-dependent molecular motors that play important roles in intracellular transport and in cell division. In most kinesins, the motor domain is found at the N-terminus (N-type), N-type kinesins are (+) end-directed motors, i.e. they transport cargo towards the (+) end of the microtubule. Kinesin motor domains hydrolyze ATP at a rate of about 80 per second, and move along the microtubule at a speed of about 6400 Angstroms per second. To achieve that, kinesin head groups work in pairs. Upon replacing ADP with ATP, a kinesin motor domain increases its affinity for microtubule binding and locks in place. Also, the neck linker binds to the motor domain, which repositions the other head domain through the coiled-coil d
Probab=100.00 E-value=2e-35 Score=318.86 Aligned_cols=140 Identities=59% Similarity=0.740 Sum_probs=129.0
Q ss_pred CCCCCCccceeEEEEEEEeecC-CCcceeeeeeEEEEecCCCCCcCCCCcchhhhhHhhhhhhchhHHHHHHHHHHhhcC
Q 002212 1 MNRASSRSHSVFTCIIESKWES-QGVTHHRFARLNLVDLAGSERQKSSGAEGERLKEATNINKSLSTLGLVIMNLVSISN 79 (953)
Q Consensus 1 MN~~SSRSHAIFTI~Ieqk~~~-~g~~~~r~SKL~LVDLAGSER~~kTgAeGeRLKEA~nINKSLsALG~VI~ALss~s~ 79 (953)
+|..|||||+||+|+|.+.... .+......|+|+|||||||||.+++++.|.+++|++.||+||++|++||.+|+.
T Consensus 212 ~n~~sSRSH~i~~i~i~~~~~~~~~~~~~~~s~l~~VDLAGsE~~~~~~~~~~~~~e~~~iN~SL~~L~~vi~al~~--- 288 (352)
T cd01364 212 MNDQSSRSHSIFSITIHIKETTISGEELVKIGKLNLVDLAGSENIGRSGAENKRAREAGNINQSLLTLGRVINALVE--- 288 (352)
T ss_pred CCCCCCCCceEEEEEEEEeccCCCCCccEEEEEEEEEECCCccccccccCcchhhHHHhhhhHHHHHHHHHHHHHHc---
Confidence 6899999999999999986543 233345679999999999999999999999999999999999999999999975
Q ss_pred CCCCCcCCCCchhhhhhhhccCCCcceeEEeecCCCCcchhhhhhHhhhHHHhhccccccccccC
Q 002212 80 GKSLHVPYRDSKLTFLLQDSLGGNSKTIIIANISPSSCCSLETLSTLKFAQRAKFIKNNAIVNED 144 (953)
Q Consensus 80 gk~~HVPYRDSKLTrLLQDSLGGNSKT~mIa~VSPs~~~~eETLSTLrFAsRAK~IKNkpvVNed 144 (953)
+..|||||+|+||+||+|+|||||+|+||+||||+..++.||++||+||+++++|+|.|++|.+
T Consensus 289 -~~~~vpyR~S~LT~lL~~~Lgg~s~t~~I~~vsp~~~~~~eTl~TL~~a~~~~~i~n~P~~n~~ 352 (352)
T cd01364 289 -KSPHIPYRESKLTRLLQDSLGGRTKTSIIATISPASINLEETLSTLEYAHRAKNIKNKPEVNQK 352 (352)
T ss_pred -CCCCCCCcccHHHHHHHHhcCCCceEEEEEEeCCCcccHHHHHHHHHHHHHHhhccCccccCCC
Confidence 3469999999999999999999999999999999999999999999999999999999999964
No 11
>cd01370 KISc_KIP3_like Kinesin motor domain, KIP3-like subgroup. The yeast kinesin KIP3 plays a role in positioning the mitotic spindle. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Kinesins are microtubule-dependent molecular motors that play important roles in intracellular transport and in cell division. In most kinesins, the motor domain is found at the N-terminus (N-type). N-type kinesins are (+) end-directed motors, i.e. they transport cargo towards the (+) end of the microtubule. Kinesin motor domains hydrolyze ATP at a rate of about 80 per second, and move along the microtubule at a speed of about 6400 Angstroms per second. To achieve that, kinesin head groups work in pairs. Upon replacing ADP with ATP, a kinesin motor domain increases its affinity for microtubule binding and locks in place. Also, the neck linker binds to the motor domain, which repositions the other head domain through the coiled-coil domain close to a sec
Probab=100.00 E-value=1.7e-35 Score=319.18 Aligned_cols=134 Identities=53% Similarity=0.698 Sum_probs=122.4
Q ss_pred CCCCCCccceeEEEEEEEeecCC-CcceeeeeeEEEEecCCCCCcCCCCcchhhhhHhhhhhhchhHHHHHHHHHHhhcC
Q 002212 1 MNRASSRSHSVFTCIIESKWESQ-GVTHHRFARLNLVDLAGSERQKSSGAEGERLKEATNINKSLSTLGLVIMNLVSISN 79 (953)
Q Consensus 1 MN~~SSRSHAIFTI~Ieqk~~~~-g~~~~r~SKL~LVDLAGSER~~kTgAeGeRLKEA~nINKSLsALG~VI~ALss~s~ 79 (953)
||..|||||+||+|+|.+..... .......|+|+|||||||||...+++.|.+++|+++||+||++|++||.+|+....
T Consensus 204 ~n~~SSRSH~i~~i~i~~~~~~~~~~~~~~~s~l~~VDLAGsEr~~~~~~~g~~~~E~~~IN~SL~~L~~vi~~L~~~~~ 283 (338)
T cd01370 204 ANATSSRSHAVLQITVRQKDRTASINQQVRIGKLSLIDLAGSERASATNNRGQRLKEGANINRSLLALGNCINALVDGKK 283 (338)
T ss_pred ccCccCcceEEEEEEEEEEecCCCCCCcEEEEEEEEEECCCCccccccCCCCccccccchhhHHHHHHHHHHHHHHhccC
Confidence 79999999999999999876542 23446679999999999999999999999999999999999999999999985332
Q ss_pred CCCCCcCCCCchhhhhhhhccCCCcceeEEeecCCCCcchhhhhhHhhhHHHhhcc
Q 002212 80 GKSLHVPYRDSKLTFLLQDSLGGNSKTIIIANISPSSCCSLETLSTLKFAQRAKFI 135 (953)
Q Consensus 80 gk~~HVPYRDSKLTrLLQDSLGGNSKT~mIa~VSPs~~~~eETLSTLrFAsRAK~I 135 (953)
+..||||||||||+||+|+|||||+|+||+||||+..+++||++||+||+||+.|
T Consensus 284 -~~~~ipyR~SkLT~lL~d~Lggn~~t~~I~~vsp~~~~~~eTl~TL~fa~ra~~I 338 (338)
T cd01370 284 -KNKHIPYRDSKLTRLLKDSLGGNCKTVMIANISPSSSHYEETHNTLKYANRAKNI 338 (338)
T ss_pred -CCCcCCCcCCHHHHHHHHhcCCCCeEEEEEEeCCchhhHHHHHHHHHHHHHhccC
Confidence 3479999999999999999999999999999999999999999999999999976
No 12
>KOG0244 consensus Kinesin-like protein [Cytoskeleton]
Probab=100.00 E-value=3.3e-35 Score=343.13 Aligned_cols=164 Identities=48% Similarity=0.661 Sum_probs=145.6
Q ss_pred CCCCCCccceeEEEEEEEeecCCCcceeeeeeEEEEecCCCCCcCCCCcchhhhhHhhhhhhchhHHHHHHHHHHhhcCC
Q 002212 1 MNRASSRSHSVFTCIIESKWESQGVTHHRFARLNLVDLAGSERQKSSGAEGERLKEATNINKSLSTLGLVIMNLVSISNG 80 (953)
Q Consensus 1 MN~~SSRSHAIFTI~Ieqk~~~~g~~~~r~SKL~LVDLAGSER~~kTgAeGeRLKEA~nINKSLsALG~VI~ALss~s~g 80 (953)
||+.|||||+||||++.+....... ...+++|+|||||||||.++|+++|+|++||.+||.+|++||+||++|.....
T Consensus 186 MN~qssRshAifti~lkq~kk~~~~-s~~~sKlhlVDLAGSER~kkT~a~gdrlKEgInIN~gLL~LgnVIsaLg~~kk- 263 (913)
T KOG0244|consen 186 MNAQSSRSHAIFTITLKQRKKLSKR-SSFCSKLHLVDLAGSERVKKTKAEGDRLKEGININGGLLALGNVISALGEAKK- 263 (913)
T ss_pred cchhhhhhhHHHHHHHHHHHHhhcc-chhhhhhheeeccccccccccccchhhhhhccCcchHHHHHHHHHHHHHhhhc-
Confidence 8999999999999999874322221 13459999999999999999999999999999999999999999999976333
Q ss_pred CCCCcCCCCchhhhhhhhccCCCcceeEEeecCCCCcchhhhhhHhhhHHHhhccccccccccCCch-hHHHHHHHHHHH
Q 002212 81 KSLHVPYRDSKLTFLLQDSLGGNSKTIIIANISPSSCCSLETLSTLKFAQRAKFIKNNAIVNEDASG-DVIAMRMEIQQL 159 (953)
Q Consensus 81 k~~HVPYRDSKLTrLLQDSLGGNSKT~mIa~VSPs~~~~eETLSTLrFAsRAK~IKNkpvVNed~s~-dv~~Lr~eIq~L 159 (953)
..|||||||||||||+|+||||+.|+||+||||+..++.||++||+||.||+.|+|+|++|.|+.. .+..++.+|+.|
T Consensus 264 -~~~vpyRdSkltrlLQdslgGns~tlmiaCiSpadsn~~EtlnTl~ya~Rak~iknk~vvN~d~~~~~~~~lK~ql~~l 342 (913)
T KOG0244|consen 264 -GGEVPYRDSKLTRLLQDSLGGNSDTLMIACISPADSNAQETLNTLRYADRAKQIKNKPVVNQDPKSFEMLKLKAQLEPL 342 (913)
T ss_pred -CCcccchHHHHHHHHHHHhcCCcceeeeeecChhhhhhhhHHHHHHHhhHHHHhcccccccccHHHHHHHHHHHHHHHH
Confidence 679999999999999999999999999999999999999999999999999999999999997754 345677888888
Q ss_pred HHHHHHHH
Q 002212 160 KKEVSRLR 167 (953)
Q Consensus 160 K~ELsrLR 167 (953)
+.++...+
T Consensus 343 ~~ell~~~ 350 (913)
T KOG0244|consen 343 QVELLSKA 350 (913)
T ss_pred HHHHHhhc
Confidence 88877765
No 13
>cd01368 KISc_KIF23_like Kinesin motor domain, KIF23-like subgroup. Members of this group may play a role in mitosis. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Kinesins are microtubule-dependent molecular motors that play important roles in intracellular transport and in cell division. In most kinesins, the motor domain is found at the N-terminus (N-type). N-type kinesins are (+) end-directed motors, i.e. they transport cargo towards the (+) end of the microtubule. Kinesin motor domains hydrolyze ATP at a rate of about 80 per second, and move along the microtubule at a speed of about 6400 Angstroms per second. To achieve that, kinesin head groups work in pairs. Upon replacing ADP with ATP, a kinesin motor domain increases its affinity for microtubule binding and locks in place. Also, the neck linker binds to the motor domain, which repositions the other head domain through the coiled-coil domain close to a second tubulin dimer, a
Probab=100.00 E-value=8.9e-35 Score=314.63 Aligned_cols=133 Identities=45% Similarity=0.565 Sum_probs=120.5
Q ss_pred CCCCCCccceeEEEEEEEeecCC------CcceeeeeeEEEEecCCCCCcCCCCcchhhhhHhhhhhhchhHHHHHHHHH
Q 002212 1 MNRASSRSHSVFTCIIESKWESQ------GVTHHRFARLNLVDLAGSERQKSSGAEGERLKEATNINKSLSTLGLVIMNL 74 (953)
Q Consensus 1 MN~~SSRSHAIFTI~Ieqk~~~~------g~~~~r~SKL~LVDLAGSER~~kTgAeGeRLKEA~nINKSLsALG~VI~AL 74 (953)
||..|||||+||+|+|.+.+... ......+|+|+|||||||||..++++.|.+++|+++||+||++|++||.+|
T Consensus 205 ~N~~SSRSH~i~~i~v~~~~~~~~~~~~~~~~~~~~s~l~~VDLAGsEr~~~~~~~g~~~~E~~~IN~SL~aL~~vi~aL 284 (345)
T cd01368 205 LNRESSRSHSVFTIKLVQAPGDSDGDVDQDKDQITVSQLSLVDLAGSERTSRTQNTGERLKEAGNINTSLMTLGKCIEVL 284 (345)
T ss_pred CcCCCCCceEEEEEEEEEeccCcccccccCCCceEEEEEEEEecccccccccccccchhhhhhhhhhHHHHHHHHHHHHH
Confidence 69999999999999998865432 123456799999999999999999999999999999999999999999999
Q ss_pred HhhcCC--CCCCcCCCCchhhhhhhhccCCCcceeEEeecCCCCcchhhhhhHhhhHHHhh
Q 002212 75 VSISNG--KSLHVPYRDSKLTFLLQDSLGGNSKTIIIANISPSSCCSLETLSTLKFAQRAK 133 (953)
Q Consensus 75 ss~s~g--k~~HVPYRDSKLTrLLQDSLGGNSKT~mIa~VSPs~~~~eETLSTLrFAsRAK 133 (953)
.....+ +..||||||||||+||+|+|||||+|+||+||||+..++.||++||+||.+|+
T Consensus 285 ~~~~~~~~~~~~iPyR~SkLT~lL~~~l~g~s~t~~I~~vsp~~~~~~eTl~tL~fa~~a~ 345 (345)
T cd01368 285 RENQLSGSTNKMVPYRDSKLTHLFQNYFDGEGKARMIVNVNPCASDYDETLHVMKFSAIAQ 345 (345)
T ss_pred HhhhcccCCCCcCCCcCCHHHHHHHHhcCCCCeEEEEEEeCCchhhHHHHHHHHHHHHhcC
Confidence 864322 57899999999999999999999999999999999999999999999999985
No 14
>cd01371 KISc_KIF3 Kinesin motor domain, kinesins II or KIF3_like proteins. Subgroup of kinesins, which form heterotrimers composed of 2 kinesins and one non-motor accessory subunit. Kinesins II play important roles in ciliary transport, and have been implicated in neuronal transport, melanosome transport, the secretory pathway, and mitosis. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Kinesins are microtubule-dependent molecular motors that play important roles in intracellular transport and in cell division. In this group the motor domain is found at the N-terminus (N-type). N-type kinesins are (+) end-directed motors, i.e. they transport cargo towards the (+) end of the microtubule. Kinesin motor domains hydrolyze ATP at a rate of about 80 per second, and move along the microtubule at a speed of about 6400 Angstroms per second. To achieve that, kinesin head groups work in pairs. Upon replacing ADP with ATP, a kinesin motor domain
Probab=100.00 E-value=1.2e-33 Score=303.80 Aligned_cols=132 Identities=65% Similarity=0.864 Sum_probs=122.2
Q ss_pred CCCCCCccceeEEEEEEEeecCC-CcceeeeeeEEEEecCCCCCcCCCCcchhhhhHhhhhhhchhHHHHHHHHHHhhcC
Q 002212 1 MNRASSRSHSVFTCIIESKWESQ-GVTHHRFARLNLVDLAGSERQKSSGAEGERLKEATNINKSLSTLGLVIMNLVSISN 79 (953)
Q Consensus 1 MN~~SSRSHAIFTI~Ieqk~~~~-g~~~~r~SKL~LVDLAGSER~~kTgAeGeRLKEA~nINKSLsALG~VI~ALss~s~ 79 (953)
+|..|||||+||+|+|.+.+... +......|+|+|||||||||..++++.|.+++|+.+||+||++|++||.+|++
T Consensus 201 ~n~~ssRSH~i~~i~v~~~~~~~~~~~~~~~s~L~~VDLAGsEr~~~~~~~~~~~~E~~~iN~sL~~L~~vi~al~~--- 277 (333)
T cd01371 201 MNEDSSRSHSIFTITIECSEKGEDGENHIRVGKLNLVDLAGSERQSKTGATGDRLKEATKINLSLSALGNVISALVD--- 277 (333)
T ss_pred ccCCCCCCcEEEEEEEEEEeccCCCCCcEEEEEEEEEECCCCCcccccCCchhhhHhHhhhhhHHHHHHHHHHHHHh---
Confidence 58999999999999999876532 44556789999999999999999999999999999999999999999999974
Q ss_pred CCCCCcCCCCchhhhhhhhccCCCcceeEEeecCCCCcchhhhhhHhhhHHHhhcc
Q 002212 80 GKSLHVPYRDSKLTFLLQDSLGGNSKTIIIANISPSSCCSLETLSTLKFAQRAKFI 135 (953)
Q Consensus 80 gk~~HVPYRDSKLTrLLQDSLGGNSKT~mIa~VSPs~~~~eETLSTLrFAsRAK~I 135 (953)
++..||||||||||+||+|+|||||+|+||+||+|+..++.||++||+||+|||.|
T Consensus 278 ~~~~~ipyR~SkLT~lL~~~l~g~s~t~~I~~vsP~~~~~~eTl~TL~fa~r~r~I 333 (333)
T cd01371 278 GKSTHIPYRDSKLTRLLQDSLGGNSKTVMCANIGPADYNYDETLSTLRYANRAKNI 333 (333)
T ss_pred CCCCcCCCccCHHHHHHHHhcCCCceEEEEEEeCCccccHHHHHHHHHHHHHhhcC
Confidence 55569999999999999999999999999999999999999999999999999976
No 15
>cd01372 KISc_KIF4 Kinesin motor domain, KIF4-like subfamily. Members of this group seem to perform a variety of functions, and have been implicated in neuronal organelle transport and chromosome segregation during mitosis. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Kinesins are microtubule-dependent molecular motors that play important roles in intracellular transport and in cell division. In most kinesins, the motor domain is found at the N-terminus (N-type). N-type kinesins are (+) end-directed motors, i.e. they transport cargo towards the (+) end of the microtubule. Kinesin motor domains hydrolyze ATP at a rate of about 80 per second, and move along the microtubule at a speed of about 6400 Angstroms per second. To achieve that, kinesin head groups work in pairs. Upon replacing ADP with ATP, a kinesin motor domain increases its affinity for microtubule binding and locks in place. Also, the neck linker binds to the motor domain,
Probab=100.00 E-value=1.7e-33 Score=302.13 Aligned_cols=135 Identities=53% Similarity=0.710 Sum_probs=122.9
Q ss_pred CCCCCCccceeEEEEEEEeecCC--------CcceeeeeeEEEEecCCCCCcCCCCcchhhhhHhhhhhhchhHHHHHHH
Q 002212 1 MNRASSRSHSVFTCIIESKWESQ--------GVTHHRFARLNLVDLAGSERQKSSGAEGERLKEATNINKSLSTLGLVIM 72 (953)
Q Consensus 1 MN~~SSRSHAIFTI~Ieqk~~~~--------g~~~~r~SKL~LVDLAGSER~~kTgAeGeRLKEA~nINKSLsALG~VI~ 72 (953)
+|..|||||+||+|+|.+..... +......|+|+|||||||||..++++.|.+++|+..||+||++|++||.
T Consensus 199 ~n~~sSRsH~i~~i~v~~~~~~~~~~~~~~~~~~~~~~s~l~~VDLAGsE~~~~~~~~~~~~~e~~~in~sl~aL~~vi~ 278 (341)
T cd01372 199 MNSQSSRSHAIFTITLEQTRKNGPIAPMSGDDKNSTLTSKFHFVDLAGSERLKKTGATGDRLKEGISINSGLLALGNVIS 278 (341)
T ss_pred CCCccCcCcEEEEEEEEEEecCCccccccccCCCceeeEEEEEEECCCCcccccccCchhHhHHHHHHhHHHHHHHHHHH
Confidence 68999999999999999876531 2334567999999999999999999999999999999999999999999
Q ss_pred HHHhhcCCCCCCcCCCCchhhhhhhhccCCCcceeEEeecCCCCcchhhhhhHhhhHHHhhccc
Q 002212 73 NLVSISNGKSLHVPYRDSKLTFLLQDSLGGNSKTIIIANISPSSCCSLETLSTLKFAQRAKFIK 136 (953)
Q Consensus 73 ALss~s~gk~~HVPYRDSKLTrLLQDSLGGNSKT~mIa~VSPs~~~~eETLSTLrFAsRAK~IK 136 (953)
+|.... ++..|||||||+||+||+|+|||||+|+||+||||+..++.||++||+||+||+.|+
T Consensus 279 al~~~~-~~~~~ipyR~S~LT~lL~~~Lgg~s~t~~I~~vsp~~~~~~eTl~tL~~a~~~~~ik 341 (341)
T cd01372 279 ALGDES-KKGSHVPYRDSKLTRLLQDSLGGNSHTLMIACVSPADSNFEETLNTLKYANRARNIK 341 (341)
T ss_pred HHHhcC-CCCCCCCCcccHHHHHHHHhcCCCceEEEEEEeCCChhhHHHHHHHHHHHHHhccCC
Confidence 997533 245799999999999999999999999999999999999999999999999999986
No 16
>cd01375 KISc_KIF9_like Kinesin motor domain, KIF9-like subgroup; might play a role in cell shape remodeling. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Kinesins are microtubule-dependent molecular motors that play important roles in intracellular transport and in cell division. In most kinesins, the motor domain is found at the N-terminus (N-type). N-type kinesins are (+) end-directed motors, i.e. they transport cargo towards the (+) end of the microtubule. Kinesin motor domains hydrolyze ATP at a rate of about 80 per second, and move along the microtubule at a speed of about 6400 Angstroms per second. To achieve that, kinesin head groups work in pairs. Upon replacing ADP with ATP, a kinesin motor domain increases its affinity for microtubule binding and locks in place. Also, the neck linker binds to the motor domain, which repositions the other head domain through the coiled-coil domain close to a second tubulin dimer, about 80
Probab=100.00 E-value=2.4e-33 Score=301.83 Aligned_cols=130 Identities=55% Similarity=0.711 Sum_probs=121.2
Q ss_pred CCCCCCccceeEEEEEEEeecCCCcceeeeeeEEEEecCCCCCcCCCCcchhhhhHhhhhhhchhHHHHHHHHHHhhcCC
Q 002212 1 MNRASSRSHSVFTCIIESKWESQGVTHHRFARLNLVDLAGSERQKSSGAEGERLKEATNINKSLSTLGLVIMNLVSISNG 80 (953)
Q Consensus 1 MN~~SSRSHAIFTI~Ieqk~~~~g~~~~r~SKL~LVDLAGSER~~kTgAeGeRLKEA~nINKSLsALG~VI~ALss~s~g 80 (953)
+|..|||||+||+|+|.+.+...+......|+|+|||||||||..++++.|.+++|+.+||+||++|++||.+|+. +
T Consensus 205 ~n~~sSRSH~i~~l~v~~~~~~~~~~~~~~s~l~~VDLAGsEr~~~~~~~~~~~~e~~~iN~SL~~L~~vi~~l~~---~ 281 (334)
T cd01375 205 MNQASSRSHCIFTIHLESRSREAGSEVVRLSKLNLVDLAGSERVSKTGVSGQVLKEAKYINKSLSFLEQVINALSE---K 281 (334)
T ss_pred CcCCcCcCeEEEEEEEEEEecCCCCCceEEEEEEEEECCCCCccccccCchhhhhhhhhhhhhHHHHHHHHHHHHh---C
Confidence 6999999999999999998665555667789999999999999999999999999999999999999999999974 3
Q ss_pred CCCCcCCCCchhhhhhhhccCCCcceeEEeecCCCCcchhhhhhHhhhHHHhh
Q 002212 81 KSLHVPYRDSKLTFLLQDSLGGNSKTIIIANISPSSCCSLETLSTLKFAQRAK 133 (953)
Q Consensus 81 k~~HVPYRDSKLTrLLQDSLGGNSKT~mIa~VSPs~~~~eETLSTLrFAsRAK 133 (953)
...||||||||||+||+|+|||||+|+||+||||+..++.||++||+||+|++
T Consensus 282 ~~~~ipyRdSkLT~lL~d~Lgg~~~t~~I~~vsp~~~~~~eTl~TL~fa~r~~ 334 (334)
T cd01375 282 ARTHVPYRNSKLTHVLRDSLGGNCKTVMLATIWVEPSNLDETLSTLRFAQRVA 334 (334)
T ss_pred CCCCCCCcccHHHHHHHHhcCCCceEEEEEEeCCchhhHHHHHHHHHHHHhcC
Confidence 35799999999999999999999999999999999999999999999999984
No 17
>cd01369 KISc_KHC_KIF5 Kinesin motor domain, kinesin heavy chain (KHC) or KIF5-like subgroup. Members of this group have been associated with organelle transport. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Kinesins are microtubule-dependent molecular motors that play important roles in intracellular transport and in cell division. In most kinesins, the motor domain is found at the N-terminus (N-type). N-type kinesins are (+) end-directed motors, i.e. they transport cargo towards the (+) end of the microtubule. Kinesin motor domains hydrolyze ATP at a rate of about 80 per second, and move along the microtubule at a speed of about 6400 Angstroms per second. To achieve that, kinesin head groups work in pairs. Upon replacing ADP with ATP, a kinesin motor domain increases its affinity for microtubule binding and locks in place. Also, the neck linker binds to the motor domain, which repositions the other head domain through the coiled-c
Probab=100.00 E-value=3e-33 Score=298.79 Aligned_cols=130 Identities=58% Similarity=0.771 Sum_probs=120.4
Q ss_pred CCCCCCccceeEEEEEEEeecCCCcceeeeeeEEEEecCCCCCcCCCCcchhhhhHhhhhhhchhHHHHHHHHHHhhcCC
Q 002212 1 MNRASSRSHSVFTCIIESKWESQGVTHHRFARLNLVDLAGSERQKSSGAEGERLKEATNINKSLSTLGLVIMNLVSISNG 80 (953)
Q Consensus 1 MN~~SSRSHAIFTI~Ieqk~~~~g~~~~r~SKL~LVDLAGSER~~kTgAeGeRLKEA~nINKSLsALG~VI~ALss~s~g 80 (953)
+|..|||||+||+|+|.+.+...+ ....|+|+|||||||||..++++.|.+++|+..||+||++|++||.+|++ +
T Consensus 196 ~n~~ssRSH~i~~i~v~~~~~~~~--~~~~s~l~~VDLAGsE~~~~~~~~~~~~~e~~~in~sl~~L~~vi~aL~~---~ 270 (325)
T cd01369 196 MNEESSRSHSIFLITLKQENVETG--SKKRGKLFLVDLAGSEKVSKTGAEGQTLEEAKKINKSLSALGNVINALTD---G 270 (325)
T ss_pred CCCccccccEEEEEEEEEEecCCC--CEEEEEEEEEECCCCCcccccCCcchhHHHHHHHhHHHHHHHHHHHHHHc---C
Confidence 689999999999999998765443 34679999999999999999999999999999999999999999999974 4
Q ss_pred CCCCcCCCCchhhhhhhhccCCCcceeEEeecCCCCcchhhhhhHhhhHHHhhcc
Q 002212 81 KSLHVPYRDSKLTFLLQDSLGGNSKTIIIANISPSSCCSLETLSTLKFAQRAKFI 135 (953)
Q Consensus 81 k~~HVPYRDSKLTrLLQDSLGGNSKT~mIa~VSPs~~~~eETLSTLrFAsRAK~I 135 (953)
...|||||||+||+||+|+|||||+|+||+||||+..++.||++||+||+|||.|
T Consensus 271 ~~~~vpyR~S~LT~lL~~~L~g~s~t~~I~~vsp~~~~~~eTl~TL~~a~r~~~i 325 (325)
T cd01369 271 KSTHIPYRDSKLTRILQDSLGGNSRTTLIICCSPSSYNESETLSTLRFGARAKTI 325 (325)
T ss_pred CCCcCCCccCHHHHHHHHhcCCCCeEEEEEEeCCccccHHHHHHHHHHHHHhhcC
Confidence 4479999999999999999999999999999999999999999999999999976
No 18
>cd01376 KISc_KID_like Kinesin motor domain, KIF22/Kid-like subgroup. Members of this group might play a role in regulating chromosomal movement along microtubules in mitosis. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Kinesins are microtubule-dependent molecular motors that play important roles in intracellular transport and in cell division. In most kinesins, the motor domain is found at the N-terminus (N-type). N-type kinesins are (+) end-directed motors, i.e. they transport cargo towards the (+) end of the microtubule. Kinesin motor domains hydrolyze ATP at a rate of about 80 per second, and move along the microtubule at a speed of about 6400 Angstroms per second. To achieve that, kinesin head groups work in pairs. Upon replacing ADP with ATP, a kinesin motor domain increases its affinity for microtubule binding and locks in place. Also, the neck linker binds to the motor domain, which repositions the other head domain through
Probab=100.00 E-value=2.9e-33 Score=299.22 Aligned_cols=125 Identities=48% Similarity=0.655 Sum_probs=116.4
Q ss_pred CCCCCCccceeEEEEEEEeecCCCcceeeeeeEEEEecCCCCCcCCCCcchhhhhHhhhhhhchhHHHHHHHHHHhhcCC
Q 002212 1 MNRASSRSHSVFTCIIESKWESQGVTHHRFARLNLVDLAGSERQKSSGAEGERLKEATNINKSLSTLGLVIMNLVSISNG 80 (953)
Q Consensus 1 MN~~SSRSHAIFTI~Ieqk~~~~g~~~~r~SKL~LVDLAGSER~~kTgAeGeRLKEA~nINKSLsALG~VI~ALss~s~g 80 (953)
+|..|||||+||+|+|.+.... ....|+|+|||||||||...+++.|.+++|+.+||+||++||+||.+|+.
T Consensus 195 ~n~~SSRSH~i~~i~v~~~~~~----~~~~s~l~~VDLAGsE~~~~~~~~g~~~~e~~~iN~Sl~~L~~vi~aL~~---- 266 (319)
T cd01376 195 LNDNSSRSHAVLRIKVTQPASN----IQLEGKLNLIDLAGSEDNRRTGNEGIRLKESAAINSSLFVLSKVVDALNK---- 266 (319)
T ss_pred CCCccCCCeEEEEEEEEEECCC----ceEEEEEEEEECCCCCcccccCCccchhhhhhhhhhhHHHHHHHHHHHhc----
Confidence 6999999999999999886432 24679999999999999999999999999999999999999999999974
Q ss_pred CCCCcCCCCchhhhhhhhccCCCcceeEEeecCCCCcchhhhhhHhhhHHHhh
Q 002212 81 KSLHVPYRDSKLTFLLQDSLGGNSKTIIIANISPSSCCSLETLSTLKFAQRAK 133 (953)
Q Consensus 81 k~~HVPYRDSKLTrLLQDSLGGNSKT~mIa~VSPs~~~~eETLSTLrFAsRAK 133 (953)
+..|||||||+||+||+|+|||||+|+||+||||...++.||++||+||+|||
T Consensus 267 ~~~~ipyr~S~LT~lL~~~L~g~s~t~~i~~vsp~~~~~~eTl~TL~fa~r~~ 319 (319)
T cd01376 267 GLPRIPYRESKLTRLLQDSLGGGSRCIMVANIAPERSFYQDTLSTLNFASRSK 319 (319)
T ss_pred CCCcCCCccCHHHHHHHHhcCCCccEEEEEEeCCchhhHHHHHHHHHHHHhhC
Confidence 34799999999999999999999999999999999999999999999999986
No 19
>cd01374 KISc_CENP_E Kinesin motor domain, CENP-E/KIP2-like subgroup, involved in chromosome movement and/or spindle elongation during mitosis. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Kinesins are microtubule-dependent molecular motors that play important roles in intracellular transport and in cell division. In most kinesins, the motor domain is found at the N-terminus (N-type). N-type kinesins are (+) end-directed motors, i.e. they transport cargo towards the (+) end of the microtubule. Kinesin motor domains hydrolyze ATP at a rate of about 80 per second, and move along the microtubule at a speed of about 6400 Angstroms per second. To achieve that, kinesin head groups work in pairs. Upon replacing ADP with ATP, a kinesin motor domain increases its affinity for microtubule binding and locks in place. Also, the neck linker binds to the motor domain, which repositions the other head domain through the coiled-coil domain close to
Probab=100.00 E-value=6.4e-33 Score=296.21 Aligned_cols=132 Identities=55% Similarity=0.704 Sum_probs=120.6
Q ss_pred CCCCCCccceeEEEEEEEeecCC-CcceeeeeeEEEEecCCCCCcCCCCcchhhhhHhhhhhhchhHHHHHHHHHHhhcC
Q 002212 1 MNRASSRSHSVFTCIIESKWESQ-GVTHHRFARLNLVDLAGSERQKSSGAEGERLKEATNINKSLSTLGLVIMNLVSISN 79 (953)
Q Consensus 1 MN~~SSRSHAIFTI~Ieqk~~~~-g~~~~r~SKL~LVDLAGSER~~kTgAeGeRLKEA~nINKSLsALG~VI~ALss~s~ 79 (953)
+|..|||||+||+|+|.+..... +......|+|+|||||||||....+ .|.+++|+.+||+||++|++||.+|++..
T Consensus 189 ~n~~ssRSH~i~~i~v~~~~~~~~~~~~~~~s~l~~vDLAGsE~~~~~~-~~~~~~e~~~iN~Sl~~L~~vi~al~~~~- 266 (321)
T cd01374 189 FNERSSRSHTIFQLTIESRERGDSESGTVRVSTLNLIDLAGSERASQTG-AGERRKEGSFINKSLLTLGTVISKLSEGK- 266 (321)
T ss_pred CCCccccccEEEEEEEEEEecCCCCCCcEEEEEEEEEECCCCCccccCC-CCccccccchhhhHHHHHHHHHHHHHhcC-
Confidence 68999999999999999876543 3345667999999999999999998 89999999999999999999999997522
Q ss_pred CCCCCcCCCCchhhhhhhhccCCCcceeEEeecCCCCcchhhhhhHhhhHHHhhcc
Q 002212 80 GKSLHVPYRDSKLTFLLQDSLGGNSKTIIIANISPSSCCSLETLSTLKFAQRAKFI 135 (953)
Q Consensus 80 gk~~HVPYRDSKLTrLLQDSLGGNSKT~mIa~VSPs~~~~eETLSTLrFAsRAK~I 135 (953)
+..||||||||||+||+|+|||||+|+||+||||...+++||++||+||+|+++|
T Consensus 267 -~~~~vpyR~SkLT~lL~~~L~g~s~t~~i~~vsp~~~~~~eTl~TL~~a~r~~~i 321 (321)
T cd01374 267 -NSGHIPYRDSKLTRILQPSLSGNARTAIICTISPASSHVEETLNTLKFASRAKKV 321 (321)
T ss_pred -CCCcCCCcCCHHHHHHHHhcCCCceEEEEEEeCCccccHHHHHHHHHHHHHHhcC
Confidence 2679999999999999999999999999999999999999999999999999976
No 20
>cd01367 KISc_KIF2_like Kinesin motor domain, KIF2-like group. KIF2 is a protein expressed in neurons, which has been associated with axonal transport and neuron development; alternative splice forms have been implicated in lysosomal translocation. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Kinesins are microtubule-dependent molecular motors that play important roles in intracellular transport and in cell division. In this subgroup the motor domain is found in the middle (M-type) of the protein chain. M-type kinesins are (+) end-directed motors, i.e. they transport cargo towards the (+) end of the microtubule. Kinesin motor domains hydrolyze ATP at a rate of about 80 per second, and move along the microtubule at a speed of about 6400 Angstroms per second (KIF2 may be slower). To achieve that, kinesin head groups work in pairs. Upon replacing ADP with ATP, a kinesin motor domain increases its affinity for microtubule binding and lo
Probab=100.00 E-value=5.9e-33 Score=297.50 Aligned_cols=124 Identities=45% Similarity=0.630 Sum_probs=114.5
Q ss_pred CCCCCCccceeEEEEEEEeecCCCcceeeeeeEEEEecCCCCCcCCCC-cchhhhhHhhhhhhchhHHHHHHHHHHhhcC
Q 002212 1 MNRASSRSHSVFTCIIESKWESQGVTHHRFARLNLVDLAGSERQKSSG-AEGERLKEATNINKSLSTLGLVIMNLVSISN 79 (953)
Q Consensus 1 MN~~SSRSHAIFTI~Ieqk~~~~g~~~~r~SKL~LVDLAGSER~~kTg-AeGeRLKEA~nINKSLsALG~VI~ALss~s~ 79 (953)
||..|||||+||+|+|.+... ....|+|+|||||||||...++ ..|.+++|+.+||+||++|++||.+|+.
T Consensus 198 ~n~~SSRSH~i~~i~v~~~~~-----~~~~s~l~~vDLAGsE~~~~~~~~~~~~~~e~~~IN~SL~~L~~vi~al~~--- 269 (322)
T cd01367 198 ANDQSSRSHAILQIILKNKKL-----NKLLGKLSFIDLAGSERGADTSEHDRQTRKEGAEINKSLLALKECIRALAS--- 269 (322)
T ss_pred CCCCcccceEEEEEEEEEecC-----CeeEEEEEEeecCCccccccccccchhhHHhHhHHhHHHHHHHHHHHHHhc---
Confidence 799999999999999988654 3456999999999999998875 5789999999999999999999999974
Q ss_pred CCCCCcCCCCchhhhhhhhccCCCcceeEEeecCCCCcchhhhhhHhhhHHHhh
Q 002212 80 GKSLHVPYRDSKLTFLLQDSLGGNSKTIIIANISPSSCCSLETLSTLKFAQRAK 133 (953)
Q Consensus 80 gk~~HVPYRDSKLTrLLQDSLGGNSKT~mIa~VSPs~~~~eETLSTLrFAsRAK 133 (953)
...||||||||||+||+|+|||||+|+||+||||+..++.||++||+||+|+|
T Consensus 270 -~~~~iPyRdSkLT~lL~~~L~g~~~t~~I~~vsp~~~~~~eTl~tL~fa~r~k 322 (322)
T cd01367 270 -NKAHVPFRGSKLTQVLRDSFIGNSKTVMIATISPSASSCEHTLNTLRYADRVK 322 (322)
T ss_pred -CCCcCCCccCHHHHHHHHhhCCCCeEEEEEEeCCchhhHHHHHHHHHHHHhhC
Confidence 34799999999999999999999999999999999999999999999999986
No 21
>smart00129 KISc Kinesin motor, catalytic domain. ATPase. Microtubule-dependent molecular motors that play important roles in intracellular transport of organelles and in cell division.
Probab=99.98 E-value=2e-32 Score=292.51 Aligned_cols=140 Identities=66% Similarity=0.841 Sum_probs=130.3
Q ss_pred CCCCCCccceeEEEEEEEeecCCCcceeeeeeEEEEecCCCCCcCCCCcchhhhhHhhhhhhchhHHHHHHHHHHhhcCC
Q 002212 1 MNRASSRSHSVFTCIIESKWESQGVTHHRFARLNLVDLAGSERQKSSGAEGERLKEATNINKSLSTLGLVIMNLVSISNG 80 (953)
Q Consensus 1 MN~~SSRSHAIFTI~Ieqk~~~~g~~~~r~SKL~LVDLAGSER~~kTgAeGeRLKEA~nINKSLsALG~VI~ALss~s~g 80 (953)
+|..|||||+||+|+|.+.....+......|+|+|||||||||...+++.|.+++|+..||+||.+|++||.+|++ .+
T Consensus 196 ~n~~ssRsH~i~~l~v~~~~~~~~~~~~~~s~l~~VDLaGse~~~~~~~~~~~~~e~~~in~sl~~L~~~l~~l~~--~~ 273 (335)
T smart00129 196 MNEESSRSHAVFTITVESKIKNSSSGSGKASKLNLVDLAGSERASKTGAEGDRLKEAGNINKSLSALGNVINALAD--GQ 273 (335)
T ss_pred CCCCCCcceEEEEEEEEEEecCCCCCCEEEEEEEEEECCCCCccccccChhHHHHhhchhhhHHHHHHHHHHHHHh--cC
Confidence 6899999999999999987555555566789999999999999999999999999999999999999999999975 34
Q ss_pred CCCCcCCCCchhhhhhhhccCCCcceeEEeecCCCCcchhhhhhHhhhHHHhhccccccccc
Q 002212 81 KSLHVPYRDSKLTFLLQDSLGGNSKTIIIANISPSSCCSLETLSTLKFAQRAKFIKNNAIVN 142 (953)
Q Consensus 81 k~~HVPYRDSKLTrLLQDSLGGNSKT~mIa~VSPs~~~~eETLSTLrFAsRAK~IKNkpvVN 142 (953)
+..|||||+|+||+||+++|||+|+|+||+||||...++.||++||+||+++++|+|+|++|
T Consensus 274 ~~~~ip~r~S~LT~lL~~~L~g~~~~~~i~~vsp~~~~~~eTl~tL~~a~~~~~i~~~p~~~ 335 (335)
T smart00129 274 KSRHIPYRDSKLTRLLQDSLGGNSKTLMIANISPSLSNLEETLSTLRFASRAKEIKNKAIVN 335 (335)
T ss_pred CCCCCCCcCcHhHHHHHHHcCCCCeEEEEEEcCCCccchHHHHHHHHHHHHHhhcccCCCcC
Confidence 67799999999999999999999999999999999999999999999999999999999876
No 22
>cd01366 KISc_C_terminal Kinesin motor domain, KIFC2/KIFC3/ncd-like carboxy-terminal kinesins. Ncd is a spindle motor protein necessary for chromosome segregation in meiosis. KIFC2/KIFC3-like kinesins have been implicated in motility of the Golgi apparatus as well as dentritic and axonal transport in neurons. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Kinesins are microtubule-dependent molecular motors that play important roles in intracellular transport and in cell division. In this subgroup the motor domain is found at the C-terminus (C-type). C-type kinesins are (-) end-directed motors, i.e. they transport cargo towards the (-) end of the microtubule. Kinesin motor domains hydrolyze ATP at a rate of about 80 per second, and move along the microtubule at a speed of about 6400 Angstroms per second. To achieve that, kinesin head groups work in pairs. Upon replacing ADP with ATP, a kinesin motor domain increases its affinity for mi
Probab=99.98 E-value=2.4e-32 Score=291.96 Aligned_cols=132 Identities=58% Similarity=0.774 Sum_probs=122.5
Q ss_pred CCCCCCccceeEEEEEEEeecCCCcceeeeeeEEEEecCCCCCcCCCCcchhhhhHhhhhhhchhHHHHHHHHHHhhcCC
Q 002212 1 MNRASSRSHSVFTCIIESKWESQGVTHHRFARLNLVDLAGSERQKSSGAEGERLKEATNINKSLSTLGLVIMNLVSISNG 80 (953)
Q Consensus 1 MN~~SSRSHAIFTI~Ieqk~~~~g~~~~r~SKL~LVDLAGSER~~kTgAeGeRLKEA~nINKSLsALG~VI~ALss~s~g 80 (953)
+|..|||||+||+|+|.+.+...+ ....|+|+||||||||+..++++.|.+++|+.+||+||++|++||.+|+.
T Consensus 198 ~n~~sSRsH~i~~i~v~~~~~~~~--~~~~s~l~~VDLaGsE~~~~~~~~~~~~~e~~~in~Sl~~L~~vl~~l~~---- 271 (329)
T cd01366 198 MNEHSSRSHAVFQLKIRGTNLQTG--EQTRGKLNLVDLAGSERLKKSGATGDRLKEAQAINKSLSALGDVISALRS---- 271 (329)
T ss_pred ccCCCCCccEEEEEEEEEEcCCCC--cEEEEEEEEEECCCCcccccccccchhhHhHhhhhhHHHHHHHHHHHHhc----
Confidence 689999999999999998765433 34679999999999999999999999999999999999999999999974
Q ss_pred CCCCcCCCCchhhhhhhhccCCCcceeEEeecCCCCcchhhhhhHhhhHHHhhccccc
Q 002212 81 KSLHVPYRDSKLTFLLQDSLGGNSKTIIIANISPSSCCSLETLSTLKFAQRAKFIKNN 138 (953)
Q Consensus 81 k~~HVPYRDSKLTrLLQDSLGGNSKT~mIa~VSPs~~~~eETLSTLrFAsRAK~IKNk 138 (953)
+..|||||+|+||+||+|+|||||+|+||+||||...+++||++||+||++++.|++.
T Consensus 272 ~~~~ipyr~S~LT~lL~~~l~g~~~t~~i~~vsp~~~~~~etl~tL~~a~~~~~i~~~ 329 (329)
T cd01366 272 KDSHVPYRNSKLTYLLQDSLGGNSKTLMFVNISPLESNLSETLCSLRFASRVRSVELG 329 (329)
T ss_pred CCCcCCCcccHhHHHHHHhcCCCceEEEEEEeCCchhhHHHHHHHHHHHHHhhcccCC
Confidence 3679999999999999999999999999999999999999999999999999999873
No 23
>KOG0247 consensus Kinesin-like protein [Cytoskeleton]
Probab=99.97 E-value=1.6e-30 Score=297.91 Aligned_cols=146 Identities=40% Similarity=0.477 Sum_probs=134.3
Q ss_pred CCCCCCccceeEEEEEEEeecCCCcceeeeeeEEEEecCCCCCcCCCCcchhhhhHhhhhhhchhHHHHHHHHHHhhc-C
Q 002212 1 MNRASSRSHSVFTCIIESKWESQGVTHHRFARLNLVDLAGSERQKSSGAEGERLKEATNINKSLSTLGLVIMNLVSIS-N 79 (953)
Q Consensus 1 MN~~SSRSHAIFTI~Ieqk~~~~g~~~~r~SKL~LVDLAGSER~~kTgAeGeRLKEA~nINKSLsALG~VI~ALss~s-~ 79 (953)
+|+.|||||+||||.|.+-..+.+...+.+|.|+|||||||||..++++.|.|++||++||.||++||+||.+|...+ +
T Consensus 301 lN~~SSRSHsVFtIkl~q~~~~~~s~~i~vSqlsLvDLAGSERt~rtq~sG~RLrEagNINtSLmTLg~Cie~LR~nqk~ 380 (809)
T KOG0247|consen 301 LNANSSRSHSVFTIKLVQAPRSQDSNQITVSQLSLVDLAGSERTNRTQNSGERLREAGNINTSLMTLRRCIDVLRENQKS 380 (809)
T ss_pred ccccccccceeEEEEeeecccccccCceeEEeeeeeecccchhcccccchhHHHHhhccccHHHHHHHHHHHHHHHHhhh
Confidence 599999999999999998777666677889999999999999999999999999999999999999999999998644 3
Q ss_pred CCCCCcCCCCchhhhhhhhccCCCcceeEEeecCCCCcchhhhhhHhhhHHHhhccccccccccCCc
Q 002212 80 GKSLHVPYRDSKLTFLLQDSLGGNSKTIIIANISPSSCCSLETLSTLKFAQRAKFIKNNAIVNEDAS 146 (953)
Q Consensus 80 gk~~HVPYRDSKLTrLLQDSLGGNSKT~mIa~VSPs~~~~eETLSTLrFAsRAK~IKNkpvVNed~s 146 (953)
+...+|||||||||++++.+|.|.++.+||+||+|...+|+|+++.|+||..+..|.+.+.++..+.
T Consensus 381 ks~~~VPyRdSKLThlfq~~f~G~gki~MIV~vnp~~e~YdEnl~vlkFaeiaq~v~v~~~~~~~~~ 447 (809)
T KOG0247|consen 381 KSQKIVPYRDSKLTHLFKNYFDGKGKIRMIVCVNPKAEDYDENLNVLKFAEIAQEVEVARPVIKKQP 447 (809)
T ss_pred hccccCcchHHHHHHHHHHhcCCCCcEEEEEecCCchhhHHHHHHHHHHHHhcccccccCcccccCC
Confidence 4457999999999999999999999999999999999999999999999999999988887765443
No 24
>PF00225 Kinesin: Kinesin motor domain; InterPro: IPR001752 Kinesin [, , ] is a microtubule-associated force-producing protein that may play a role in organelle transport. The kinesin motor activity is directed toward the microtubule's plus end. Kinesin is an oligomeric complex composed of two heavy chains and two light chains. The maintenance of the quaternary structure does not require interchain disulphide bonds. The heavy chain is composed of three structural domains: a large globular N-terminal domain which is responsible for the motor activity of kinesin (it is known to hydrolyse ATP, to bind and move on microtubules), a central alpha-helical coiled coil domain that mediates the heavy chain dimerisation; and a small globular C-terminal domain which interacts with other proteins (such as the kinesin light chains), vesicles and membranous organelles. A number of proteins have been recently found that contain a domain similar to that of the kinesin 'motor' domain [, ]: Drosophila melanogaster claret segregational protein (ncd). Ncd is required for normal chromosomal segregation in meiosis, in females, and in early mitotic divisions of the embryo. The ncd motor activity is directed toward the microtubule's minus end. Homo sapiens CENP-E []. CENP-E is a protein that associates with kinetochores during chromosome congression, relocates to the spindle midzone at anaphase, and is quantitatively discarded at the end of the cell division. CENP-E is probably an important motor molecule in chromosome movement and/or spindle elongation. H. sapiens mitotic kinesin-like protein-1 (MKLP-1), a motor protein whose activity is directed toward the microtubule's plus end. Saccharomyces cerevisiae KAR3 protein, which is essential for nuclear fusion during mating. KAR3 may mediate microtubule sliding during nuclear fusion and possibly mitosis. S. cerevisiae CIN8 and KIP1 proteins which are required for the assembly of the mitotic spindle. Both proteins seem to interact with spindle microtubules to produce an outwardly directed force acting upon the poles. Emericella nidulans (Aspergillus nidulans) bimC, which plays an important role in nuclear division. A. nidulans klpA. Caenorhabditis elegans unc-104, which may be required for the transport of substances needed for neuronal cell differentiation. C. elegans osm-3. Xenopus laevis Eg5, which may be involved in mitosis. Arabidopsis thaliana KatA, KatB and katC. Chlamydomonas reinhardtii FLA10/KHP1 and KLP1. Both proteins seem to play a role in the rotation or twisting of the microtubules of the flagella. C. elegans hypothetical protein T09A5.2. The kinesin motor domain is located in the N-terminal part of most of the above proteins, with the exception of KAR3, klpA, and ncd where it is located in the C-terminal section. The kinesin motor domain contains about 330 amino acids. An ATP-binding motif of type A is found near position 80 to 90, the C-terminal half of the domain is involved in microtubule-binding.; GO: 0003777 microtubule motor activity, 0005524 ATP binding, 0007018 microtubule-based movement; PDB: 3NWN_A 2Y5W_A 2Y65_C 3BFN_A 2WBE_C 2ZFL_A 2ZFI_A 1I6I_A 2ZFM_A 1IA0_K ....
Probab=99.97 E-value=2.6e-32 Score=290.87 Aligned_cols=133 Identities=61% Similarity=0.769 Sum_probs=120.9
Q ss_pred CCCCCCccceeEEEEEEEeecCCCcc--eeeeeeEEEEecCCCCCcCCCCc-chhhhhHhhhhhhchhHHHHHHHHHHhh
Q 002212 1 MNRASSRSHSVFTCIIESKWESQGVT--HHRFARLNLVDLAGSERQKSSGA-EGERLKEATNINKSLSTLGLVIMNLVSI 77 (953)
Q Consensus 1 MN~~SSRSHAIFTI~Ieqk~~~~g~~--~~r~SKL~LVDLAGSER~~kTgA-eGeRLKEA~nINKSLsALG~VI~ALss~ 77 (953)
+|..|||||+||+|+|.+.....+.. ....|+|+|||||||||...+++ .|.+++|++.||+||++|++||.+|+..
T Consensus 200 ~n~~sSRSH~i~~i~v~~~~~~~~~~~~~~~~s~l~~vDLaGsE~~~~~~~~~~~~~~e~~~in~Sl~~L~~vi~~L~~~ 279 (335)
T PF00225_consen 200 MNARSSRSHAIFTIHVEQKDRDPSDDEESVKHSRLTFVDLAGSERLKKSGASDGQRLKESSNINKSLSALGNVIRALAQG 279 (335)
T ss_dssp CTHHGGGSEEEEEEEEEEEETTTTTEEEEEEEEEEEEEEEEESTGGCGCSSSSHHHHHHHHHHHHHHHHHHHHHHHHHCT
T ss_pred ccccccccccccccccccccccccccccceeecceeeeecccccccccccccccccccccceecchhhhhhhhHhhhhcc
Confidence 58889999999999999987665543 35779999999999999999986 4889999999999999999999999753
Q ss_pred cCCCCCCcCCCCchhhhhhhhccCCCcceeEEeecCCCCcchhhhhhHhhhHHHhhcc
Q 002212 78 SNGKSLHVPYRDSKLTFLLQDSLGGNSKTIIIANISPSSCCSLETLSTLKFAQRAKFI 135 (953)
Q Consensus 78 s~gk~~HVPYRDSKLTrLLQDSLGGNSKT~mIa~VSPs~~~~eETLSTLrFAsRAK~I 135 (953)
+...|||||+||||+||+|+|||||+|+||+||+|+..+++||++||+||.+++.|
T Consensus 280 --~~~~~vpyr~SkLT~lL~d~l~g~s~t~~I~~vsp~~~~~~eTl~tL~fa~~~~~I 335 (335)
T PF00225_consen 280 --SKQSHVPYRDSKLTRLLKDSLGGNSKTILIVCVSPSSEDYEETLSTLRFASRAREI 335 (335)
T ss_dssp --TSTSSSCGGGSHHHHHTGGGTSSSSEEEEEEEE-SBGGGHHHHHHHHHHHHHHTTE
T ss_pred --ccchhhhhhcccccceecccccccccceeEEEcCCccccHHHHHHHHHHHHHHcCC
Confidence 45789999999999999999999999999999999999999999999999999986
No 25
>KOG0239 consensus Kinesin (KAR3 subfamily) [Cytoskeleton]
Probab=99.97 E-value=2.6e-32 Score=317.38 Aligned_cols=141 Identities=53% Similarity=0.698 Sum_probs=128.3
Q ss_pred CCCCCCccceeEEEEEEEeecCCCcceeeeeeEEEEecCCCCCcCCCCcchhhhhHhhhhhhchhHHHHHHHHHHhhcCC
Q 002212 1 MNRASSRSHSVFTCIIESKWESQGVTHHRFARLNLVDLAGSERQKSSGAEGERLKEATNINKSLSTLGLVIMNLVSISNG 80 (953)
Q Consensus 1 MN~~SSRSHAIFTI~Ieqk~~~~g~~~~r~SKL~LVDLAGSER~~kTgAeGeRLKEA~nINKSLsALG~VI~ALss~s~g 80 (953)
||++|||||+||+|+|.+.+...+ ....|.|+|||||||||+.+++++|+|++|+.+||+||++||.||.+|++
T Consensus 512 ~Ne~SSRSH~v~~v~v~g~~~~t~--~~~~g~l~LVDLAGSER~~~s~~tG~RlkE~Q~INkSLS~LgdVi~AL~~---- 585 (670)
T KOG0239|consen 512 SNERSSRSHLVFRVRIRGINELTG--IRVTGVLNLVDLAGSERVSKSGVTGERLKEAQNINKSLSALGDVISALAS---- 585 (670)
T ss_pred cchhhhccceEEEEEEeccccCcc--cccccceeEeecccCcccCcCCCchhhhHHHHHhchhhhhhHHHHHHHhh----
Confidence 799999999999999998755444 33569999999999999999999999999999999999999999999975
Q ss_pred CCCCcCCCCchhhhhhhhccCCCcceeEEeecCCCCcchhhhhhHhhhHHHhhccccccccccCCch
Q 002212 81 KSLHVPYRDSKLTFLLQDSLGGNSKTIIIANISPSSCCSLETLSTLKFAQRAKFIKNNAIVNEDASG 147 (953)
Q Consensus 81 k~~HVPYRDSKLTrLLQDSLGGNSKT~mIa~VSPs~~~~eETLSTLrFAsRAK~IKNkpvVNed~s~ 147 (953)
+..||||||||||+||+|||||+++|+|+++|||...++.||+++|+||.|++.+...+..-.....
T Consensus 586 k~~HiPyRNSKLT~lLq~sLGG~sKTLmfv~isP~~~~~~Etl~sL~FA~rv~~~~lG~a~~~~~~~ 652 (670)
T KOG0239|consen 586 KRSHIPYRNSKLTQLLQDSLGGDSKTLMFVNISPAAAALFETLCSLRFATRVRSVELGSARKQVSTS 652 (670)
T ss_pred cCCCCcccccchHHHhHhhhCCccceeeEEEeCccHHHHhhhhhccchHHHhhceeccccccccccc
Confidence 7789999999999999999999999999999999999999999999999999999888765433333
No 26
>cd00106 KISc Kinesin motor domain. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Kinesins are microtubule-dependent molecular motors that play important roles in intracellular transport and in cell division. In most kinesins, the motor domain is found at the N-terminus (N-type), in some its is found in the middle (M-type), or C-terminal (C-type). N-type and M-type kinesins are (+) end-directed motors, while C-type kinesins are (-) end-directed motors, i.e. they transport cargo towards the (-) end of the microtubule. Kinesin motor domains hydrolyze ATP at a rate of about 80 per second, and move along the microtubule at a speed of about 6400 Angstroms per second. To achieve that, kinesin head groups work in pairs. Upon replacing ADP with ATP, a kinesin motor domain increases its affinity for microtubule binding and locks in place. Also, the neck linker binds to the motor domain, which repositions the other head domain through the coil
Probab=99.97 E-value=2.8e-30 Score=274.65 Aligned_cols=131 Identities=65% Similarity=0.820 Sum_probs=120.0
Q ss_pred CCCCCCccceeEEEEEEEeecCCCcceeeeeeEEEEecCCCCCcCCCCcchhhhhHhhhhhhchhHHHHHHHHHHhhcCC
Q 002212 1 MNRASSRSHSVFTCIIESKWESQGVTHHRFARLNLVDLAGSERQKSSGAEGERLKEATNINKSLSTLGLVIMNLVSISNG 80 (953)
Q Consensus 1 MN~~SSRSHAIFTI~Ieqk~~~~g~~~~r~SKL~LVDLAGSER~~kTgAeGeRLKEA~nINKSLsALG~VI~ALss~s~g 80 (953)
+|..|||||+||+|+|.+.+...+......|+|+||||||||+...+++.|.++.|+..||+||++|++||.+|+...
T Consensus 198 ~n~~ssRSH~i~~i~v~~~~~~~~~~~~~~s~l~~VDLaGse~~~~~~~~~~~~~e~~~in~sl~~L~~vl~~l~~~~-- 275 (328)
T cd00106 198 MNERSSRSHAIFTIHVEQRNTTNDGRSIKSSKLNLVDLAGSERAKKTGAEGDRLKEAKNINKSLSALGNVISALSSGQ-- 275 (328)
T ss_pred CCCCcCcCcEEEEEEEEEEecCCCCccEEEEEEEEEECCCCCcccccCCchhhhHhHHhhhhhHHHHHHHHHHHHhcC--
Confidence 588999999999999999876554434667999999999999999999999999999999999999999999997522
Q ss_pred CCCCcCCCCchhhhhhhhccCCCcceeEEeecCCCCcchhhhhhHhhhHHHhh
Q 002212 81 KSLHVPYRDSKLTFLLQDSLGGNSKTIIIANISPSSCCSLETLSTLKFAQRAK 133 (953)
Q Consensus 81 k~~HVPYRDSKLTrLLQDSLGGNSKT~mIa~VSPs~~~~eETLSTLrFAsRAK 133 (953)
+..|||||+||||+||+|+|||+|+|+||+||+|...++.||++||+||+|||
T Consensus 276 ~~~~ip~r~SkLT~lL~~~l~g~~~t~~I~~vsp~~~~~~eTl~tL~~a~r~~ 328 (328)
T cd00106 276 KKKHIPYRDSKLTRLLQDSLGGNSKTLMIANISPSSENYDETLSTLRFASRAK 328 (328)
T ss_pred CCCcCCCcCcHHHHHHHHhcCCCCeEEEEEEeCCchhhHHHHHHHHHHHHhcC
Confidence 15799999999999999999999999999999999999999999999999985
No 27
>cd01363 Motor_domain Myosin and Kinesin motor domain. These ATPases belong to the P-loop NTPase family and provide the driving force in myosin and kinesin mediated processes.
Probab=99.96 E-value=5e-30 Score=255.03 Aligned_cols=110 Identities=60% Similarity=0.805 Sum_probs=101.1
Q ss_pred CCCCCCccceeEEEEEEEeecCC-CcceeeeeeEEEEecCCCCCcCCCCcchhhhhHhhhhhhchhHHHHHHHHHHhhcC
Q 002212 1 MNRASSRSHSVFTCIIESKWESQ-GVTHHRFARLNLVDLAGSERQKSSGAEGERLKEATNINKSLSTLGLVIMNLVSISN 79 (953)
Q Consensus 1 MN~~SSRSHAIFTI~Ieqk~~~~-g~~~~r~SKL~LVDLAGSER~~kTgAeGeRLKEA~nINKSLsALG~VI~ALss~s~ 79 (953)
||..|||||+||+|+|.+..... +....+.|+|+|||||||||...+++.|.+++|+.+||+||++|++||.+|++
T Consensus 76 ~N~~SSRsH~i~~i~v~~~~~~~~~~~~~~~s~l~lVDLAGsE~~~~~~~~~~~~~e~~~in~sl~~L~~~i~~l~~--- 152 (186)
T cd01363 76 MNEHSSRSHSVFRIHFGGKNALASATEQPKVGKINLVDLAGSERIDFSGAEGSRLTETANINKSLSTLGNVISALAE--- 152 (186)
T ss_pred CCCccCcccEEEEEEEEEeecCCCCccceeeeeEEEEEccccccccccCCchhhHHHHHHHhhHHHHHHHHHHHHhc---
Confidence 69999999999999999876543 33456789999999999999999999999999999999999999999999974
Q ss_pred CCCCCcCCCCchhhhhhhhccCCCcceeEEeecCC
Q 002212 80 GKSLHVPYRDSKLTFLLQDSLGGNSKTIIIANISP 114 (953)
Q Consensus 80 gk~~HVPYRDSKLTrLLQDSLGGNSKT~mIa~VSP 114 (953)
+..||||||||||+||+|+|||||+|+||+||||
T Consensus 153 -~~~~vpyr~SkLT~lL~~~L~g~~~t~~i~~vsP 186 (186)
T cd01363 153 -RDSHVPYRESKLTRLLQDSLGGNSRTLMVACISP 186 (186)
T ss_pred -CCCCCCCcccHHHHHHHHhcCCCCeEEEEEEeCc
Confidence 4579999999999999999999999999999999
No 28
>COG5059 KIP1 Kinesin-like protein [Cytoskeleton]
Probab=99.96 E-value=1e-29 Score=291.94 Aligned_cols=162 Identities=51% Similarity=0.689 Sum_probs=140.1
Q ss_pred CCCCCCccceeEEEEEEEeecCCCcceeeeeeEEEEecCCCCCcCCCCcchhhhhHhhhhhhchhHHHHHHHHHHhhcCC
Q 002212 1 MNRASSRSHSVFTCIIESKWESQGVTHHRFARLNLVDLAGSERQKSSGAEGERLKEATNINKSLSTLGLVIMNLVSISNG 80 (953)
Q Consensus 1 MN~~SSRSHAIFTI~Ieqk~~~~g~~~~r~SKL~LVDLAGSER~~kTgAeGeRLKEA~nINKSLsALG~VI~ALss~s~g 80 (953)
||..|||||+||++++.+.....+... .++++|||||||||...++..+.|++|+..||+||.+||+||.+|.+ .+
T Consensus 206 ~n~~ssRshsi~~i~~~~~~~~~~~~~--~~~l~lvDLagSE~~~~~~~~~~r~~E~~~iN~sLl~Lg~vI~~L~~--~~ 281 (568)
T COG5059 206 INDESSRSHSIFQIELASKNKVSGTSE--TSKLSLVDLAGSERAARTGNRGTRLKEGASINKSLLTLGNVINALGD--KK 281 (568)
T ss_pred hccccccceEEEEEEEEEeccCcccee--cceEEEEeeccccccchhhcccchhhhhhhhHhhHHHHHHHHHHHhc--cc
Confidence 688999999999999999876555443 37999999999999999999999999999999999999999999974 25
Q ss_pred CCCCcCCCCchhhhhhhhccCCCcceeEEeecCCCCcchhhhhhHhhhHHHhhcccccccccc--CCchhHHHHHHHHHH
Q 002212 81 KSLHVPYRDSKLTFLLQDSLGGNSKTIIIANISPSSCCSLETLSTLKFAQRAKFIKNNAIVNE--DASGDVIAMRMEIQQ 158 (953)
Q Consensus 81 k~~HVPYRDSKLTrLLQDSLGGNSKT~mIa~VSPs~~~~eETLSTLrFAsRAK~IKNkpvVNe--d~s~dv~~Lr~eIq~ 158 (953)
+..|||||+|||||+|+++|||+|+|+|||||+|...++++|.+||+||.||+.|++.+.+|. +....+..+...+..
T Consensus 282 ~~~~ipyReskLTRlLq~sLgG~~~~~~i~~Isp~~~~~~et~~tL~~a~rak~I~~~~~~~~~~~~~~~~~~~~~d~~~ 361 (568)
T COG5059 282 KSGHIPYRESKLTRLLQDSLGGNCNTRVICTISPSSNSFEETINTLKFASRAKSIKNKIQVNSSSDSSREIEEIKFDLSE 361 (568)
T ss_pred cCCccchhhhHHHHHHHHhcCCCccEEEEEEEcCCCCchHHHHHHHHHHHHHhhcCCcccccCcCcchHHHHHHHhhhhh
Confidence 677999999999999999999999999999999999999999999999999999999999995 444444444445544
Q ss_pred HHHHHHHH
Q 002212 159 LKKEVSRL 166 (953)
Q Consensus 159 LK~ELsrL 166 (953)
.+.....+
T Consensus 362 ~~~~~~~~ 369 (568)
T COG5059 362 DRSEIEIL 369 (568)
T ss_pred hhhhhhhH
Confidence 44444444
No 29
>KOG0246 consensus Kinesin-like protein [Cytoskeleton]
Probab=99.96 E-value=6.2e-30 Score=287.20 Aligned_cols=130 Identities=41% Similarity=0.544 Sum_probs=115.6
Q ss_pred CCCCCccceeEEEEEEEeecCCCcceeeeeeEEEEecCCCCCcCCC-CcchhhhhHhhhhhhchhHHHHHHHHHHhhcCC
Q 002212 2 NRASSRSHSVFTCIIESKWESQGVTHHRFARLNLVDLAGSERQKSS-GAEGERLKEATNINKSLSTLGLVIMNLVSISNG 80 (953)
Q Consensus 2 N~~SSRSHAIFTI~Ieqk~~~~g~~~~r~SKL~LVDLAGSER~~kT-gAeGeRLKEA~nINKSLsALG~VI~ALss~s~g 80 (953)
|..|||||+||.|.+..... ...+|+++||||||+||..+| .++.++..||+.|||||++|..||++|. .
T Consensus 415 Ns~SSRSHAvfQIilr~~~~-----~k~hGKfSlIDLAGnERGaDts~adRqtRlEGAEINKSLLALKECIRaLg----~ 485 (676)
T KOG0246|consen 415 NSNSSRSHAVFQIILRKHGE-----FKLHGKFSLIDLAGNERGADTSSADRQTRLEGAEINKSLLALKECIRALG----R 485 (676)
T ss_pred cccccccceeEeeeeecCCc-----ceeEeEEEEEEccCCccCCcccccchhhhhhhhhhhHHHHHHHHHHHHhc----C
Confidence 89999999999999966321 335699999999999997665 4567778899999999999999999994 3
Q ss_pred CCCCcCCCCchhhhhhhhccCC-CcceeEEeecCCCCcchhhhhhHhhhHHHhhccccccc
Q 002212 81 KSLHVPYRDSKLTFLLQDSLGG-NSKTIIIANISPSSCCSLETLSTLKFAQRAKFIKNNAI 140 (953)
Q Consensus 81 k~~HVPYRDSKLTrLLQDSLGG-NSKT~mIa~VSPs~~~~eETLSTLrFAsRAK~IKNkpv 140 (953)
..+|+|||.||||.+|+|||-| |++||||+||||+..+++.||+|||||.|+|.....+.
T Consensus 486 nk~H~PFR~SKLTqVLRDSFIGenSrTcMIA~ISPg~~ScEhTLNTLRYAdRVKeLsv~~~ 546 (676)
T KOG0246|consen 486 NKSHLPFRGSKLTQVLRDSFIGENSRTCMIATISPGISSCEHTLNTLRYADRVKELSVDGG 546 (676)
T ss_pred CCCCCCchhhhHHHHHHHhhcCCCCceEEEEEeCCCcchhhhhHHHHHHHHHHHhhcCCCC
Confidence 6679999999999999999988 99999999999999999999999999999998766544
No 30
>PF12711 Kinesin-relat_1: Kinesin motor; InterPro: IPR024658 Kinesin [, , ] is a microtubule-associated force-producing protein that may play a role in organelle transport. The kinesin motor activity is directed toward the microtubule's plus end. Kinesin is an oligomeric complex composed of two heavy chains and two light chains. The maintenance of the quaternary structure does not require interchain disulphide bonds. The heavy chain is composed of three structural domains: a large globular N-terminal domain which is responsible for the motor activity of kinesin (it is known to hydrolyse ATP, to bind and move on microtubules), a central alpha-helical coiled coil domain that mediates the heavy chain dimerisation; and a small globular C-terminal domain which interacts with other proteins (such as the kinesin light chains), vesicles and membranous organelles. A number of proteins have been recently found that contain a domain similar to that of the kinesin 'motor' domain [, ]: Drosophila melanogaster claret segregational protein (ncd). Ncd is required for normal chromosomal segregation in meiosis, in females, and in early mitotic divisions of the embryo. The ncd motor activity is directed toward the microtubule's minus end. Homo sapiens CENP-E []. CENP-E is a protein that associates with kinetochores during chromosome congression, relocates to the spindle midzone at anaphase, and is quantitatively discarded at the end of the cell division. CENP-E is probably an important motor molecule in chromosome movement and/or spindle elongation. H. sapiens mitotic kinesin-like protein-1 (MKLP-1), a motor protein whose activity is directed toward the microtubule's plus end. Saccharomyces cerevisiae KAR3 protein, which is essential for nuclear fusion during mating. KAR3 may mediate microtubule sliding during nuclear fusion and possibly mitosis. S. cerevisiae CIN8 and KIP1 proteins which are required for the assembly of the mitotic spindle. Both proteins seem to interact with spindle microtubules to produce an outwardly directed force acting upon the poles. Emericella nidulans (Aspergillus nidulans) bimC, which plays an important role in nuclear division. A. nidulans klpA. Caenorhabditis elegans unc-104, which may be required for the transport of substances needed for neuronal cell differentiation. C. elegans osm-3. Xenopus laevis Eg5, which may be involved in mitosis. Arabidopsis thaliana KatA, KatB and katC. Chlamydomonas reinhardtii FLA10/KHP1 and KLP1. Both proteins seem to play a role in the rotation or twisting of the microtubules of the flagella. C. elegans hypothetical protein T09A5.2. Kinesin-like proteins KLP2 (or KIF15) also contain a kinesin 'motor' domain. They are involved in mitotic spindle assembly, playing a role in positioning spindle poles during mitosis, specifically at prometaphase []. This entry represents a domain of unknown function found in this type of kinesin-like proteins.
Probab=98.65 E-value=3.6e-08 Score=90.42 Aligned_cols=56 Identities=43% Similarity=0.587 Sum_probs=53.5
Q ss_pred HHHHHHHHHHhhcCCCchhhhHHHHHHHHHHHHHHHh------------------------------hhhhhhhHHHHHH
Q 002212 266 REAGIKRLEAVASGKISAETHLLKEKEECLKEIESFY------------------------------EGGEREMMSQQIM 315 (953)
Q Consensus 266 REdkI~rLE~l~~g~~sae~~Ll~Ene~L~eEIq~Lq------------------------------eegERE~lleeIs 315 (953)
|+|+|.|||++++|++|++.+++.+|.+|++||+.|+ .+||||+++++|+
T Consensus 1 REdkI~rLE~~~~g~l~~~~~~~~e~~~L~eEI~~Lr~qve~nPevtr~A~EN~rL~ee~rrl~~f~~~gerE~l~~eis 80 (86)
T PF12711_consen 1 REDKIKRLEKLLDGKLPSESYLEEENEALKEEIQLLREQVEHNPEVTRFAMENIRLREELRRLQSFYVEGEREMLLQEIS 80 (86)
T ss_pred CchHHHHHHHHhcCCCCccchhHHHHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHH
Confidence 7899999999999999999999999999999999986 8999999999999
Q ss_pred HHHHHH
Q 002212 316 VLQNKL 321 (953)
Q Consensus 316 ~Lqd~L 321 (953)
.|+++|
T Consensus 81 ~L~~~l 86 (86)
T PF12711_consen 81 ELRDQL 86 (86)
T ss_pred HHHhhC
Confidence 999875
No 31
>PF06548 Kinesin-related: Kinesin-related; InterPro: IPR010544 This entry represents a domain within kinesin-related proteins from higher plants. Many proteins containing this domain also contain the IPR001752 from INTERPRO domain. Kinesins are ATP-driven microtubule motor proteins that produce directed force []. Some family members are associated with the phragmoplast, a structure composed mainly of microtubules that executes cytokinesis in higher plants [].
Probab=98.52 E-value=0.00016 Score=82.52 Aligned_cols=191 Identities=23% Similarity=0.259 Sum_probs=124.5
Q ss_pred hhHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHhhcCCCchhhhHHHHHHHH
Q 002212 215 KDYELALVGAFRREKEKDISLQALAAENQAALRLAKQREDEIQGLKMRLRFREAGIKRLEAVASGKISAETHLLKEKEEC 294 (953)
Q Consensus 215 ~~~e~~lv~a~RrekEke~~LkkL~aEle~~~~Lv~qREeeiqs~KM~LRfREdkI~rLE~l~~g~~sae~~Ll~Ene~L 294 (953)
++.+..+.+++||+.+.+....+..++|+++++||.|--.+-...-.+-..|+++|.|++++.+|.+|.+.++-+|.-.|
T Consensus 101 KavekVlagaIrREmeLEe~C~eQAakIeQLNrLVqQyK~ErE~naiI~Q~re~k~~rleslmdg~l~~~e~~~ee~~sl 180 (488)
T PF06548_consen 101 KAVEKVLAGAIRREMELEEVCAEQAAKIEQLNRLVQQYKHERECNAIIAQTREDKILRLESLMDGVLPTEEFIDEEYVSL 180 (488)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccchhhHHHHHhhhhHHHHHHHhhccccchHHHhhhHhhhh
Confidence 56778899999999999999999999999999999998777767777888999999999999999999986666655555
Q ss_pred HHHHHHHh-------------------------------hhhhhhhHHHHHHHHHHHHHHHhhHhhhccCCcccc-----
Q 002212 295 LKEIESFY-------------------------------EGGEREMMSQQIMVLQNKLLEALDWKLMHESDSSAV----- 338 (953)
Q Consensus 295 ~eEIq~Lq-------------------------------eegERE~lleeIs~Lqd~Lle~ld~k~~~e~~~v~~----- 338 (953)
+.|-+.|+ +-||||.|+++|+.|+++|--.++-........+.+
T Consensus 181 ~~e~KlLk~~~en~pevl~~~~E~k~~qeel~~~~~~~~d~~EkE~Ll~EIq~Lk~qL~~~~~ss~s~~~~~~sll~~s~ 260 (488)
T PF06548_consen 181 MHEHKLLKEKYENHPEVLKEKIELKRVQEELEEYRNFSFDMGEKEVLLEEIQDLKSQLQYYTDSSMSTDRLRSSLLQRSY 260 (488)
T ss_pred hhHhhhhhhhccCchHHHhhHhHHHHHHHHHHhccccccCcchHHHHHHHHHHHHHHHHhccccccccccccccHHhhhh
Confidence 43333321 568999999999999999864444433333322222
Q ss_pred --CCCCCCC--cccchhhhHHHHHHHHhhHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHhhccCchhhhhhh
Q 002212 339 --QEPGSPW--RTSVNEENEFLRMQAIHNQAEMETLRKQLEFSLDEKEKLERHVSDLVKKLEEQTCPISAKEET 408 (953)
Q Consensus 339 --~~~~~~~--~~s~~~Ene~Lr~~~~~~~~El~~~~k~l~~clEen~kl~r~i~~L~~el~~~~~~~~~~~~~ 408 (953)
..+..+. ..+...+-+.=|..--.+.++-=++..+|-.=+|.+-.+ .++++.+|...++|-+++...
T Consensus 261 ~~~~~~~~~~~~~~~~~~le~er~~wtE~ES~WIsLteeLR~dle~~r~~---aek~~~EL~~Ek~c~eEL~~a 331 (488)
T PF06548_consen 261 QLRPSAIPESGDENAEEELEQERQRWTEAESKWISLTEELRVDLESSRSL---AEKLEMELDSEKKCTEELDDA 331 (488)
T ss_pred ccCCCCCcccCCCchhhhHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHH---HHHHHHHHHHHHHhHHHHHHH
Confidence 1101100 011112222112222233333334555555555555443 455666777777776655443
No 32
>PF10174 Cast: RIM-binding protein of the cytomatrix active zone; InterPro: IPR019323 This entry represents a family of proteins that form part of the CAZ (cytomatrix at the active zone) complex which is involved in determining the site of synaptic vesicle fusion []. Located at the C terminus is a PDZ-binding motif that binds directly to RIM (a small G protein Rab-3A effector). These proteins also contain four coiled-coil domains [].
Probab=98.07 E-value=0.074 Score=65.48 Aligned_cols=59 Identities=20% Similarity=0.346 Sum_probs=42.5
Q ss_pred ccccchhhhhccHHHHhhhHHHHHHHhhhhhhhHHHhhhhhhhhccchhhHHHHHHHHHh
Q 002212 775 NLGGKATELLKSEEEKTKLQTELKLCRERLGVVKREFEDLTKKSWKIDSDLQTVQMEIQK 834 (953)
Q Consensus 775 ~~~gka~~llk~ee~~~kl~~e~k~~~e~l~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~ 834 (953)
+.+.=|+..+|..-+-..|.-++.+.|++.+-+.++++.. +.+.++-..|+.|+.++.-
T Consensus 501 e~s~l~s~~~K~~s~i~~l~I~lEk~rek~~kl~~ql~k~-~~~~e~~~r~~~Le~ev~~ 559 (775)
T PF10174_consen 501 EASKLASSQEKKDSEIERLEIELEKKREKHEKLEKQLEKL-RANAELRDRIQQLEQEVTR 559 (775)
T ss_pred HHHHHhhccchhhhHHHHHHHHHHHhhhHHHHHHHHHHHH-HhCHhhcchHHHHHHHHHH
Confidence 3344455666777777778888888888888888888774 3466777788888777643
No 33
>TIGR00606 rad50 rad50. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=98.01 E-value=0.14 Score=66.24 Aligned_cols=280 Identities=14% Similarity=0.190 Sum_probs=135.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHhhHHHHHhhhHHHHHHHHhhhcCCccccccccccccchhhccccccccc
Q 002212 496 ELYERKEMEMKREAENLELQLAEMNEENEKLLGLYEKAMQERDEFKRMISLCGQNRAEASGEIYCPEKLVEIDGEAAFAD 575 (953)
Q Consensus 496 ~~~~~~~~~~~~~~~~L~~ql~e~~~en~kl~~lye~am~e~d~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 575 (953)
++....+.+++..+.+++.++.+...+=+++...+++...+.+.+.-++..
T Consensus 740 ~l~~~eip~l~~~l~~le~~l~~~~~~le~~~~~l~~~~~~~~~~esL~~~----------------------------- 790 (1311)
T TIGR00606 740 DLKEKEIPELRNKLQKVNRDIQRLKNDIEEQETLLGTIMPEEESAKVCLTD----------------------------- 790 (1311)
T ss_pred HHHHhhchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHH-----------------------------
Confidence 333445677788888888888888888888888888888888776543311
Q ss_pred cchhhhchhhhhhhhhHHHHHHHHHHHHHHhhhhhhhhhhhhhHHHHhhhHhhhhhhhHhhhhhHHHHHHhhhhhhHHhh
Q 002212 576 METEQLNLANIKVTEDLNLVRLKLEKAQEKLSDSANTITLFGSVEKAFAEVDKLSGDIVAMEDSIQAKQQQCGSLKHLCS 655 (953)
Q Consensus 576 ~~~~~~~~~~~~~~~~l~~~~~k~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 655 (953)
-..+.....++.-++.+++....++..+... ..++..-.++..+..++..+...+...+.++..++..++
T Consensus 791 ------v~~i~r~~~ei~~l~~qie~l~~~l~~~~~~----~s~~ele~ei~~~~~el~~l~~~~e~l~~e~e~~~~eI~ 860 (1311)
T TIGR00606 791 ------VTIMERFQMELKDVERKIAQQAAKLQGSDLD----RTVQQVNQEKQEKQHELDTVVSKIELNRKLIQDQQEQIQ 860 (1311)
T ss_pred ------HHHHHHHHHHHHHHHHHHHHHHHHhcccccc----CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 0123344555666666666665555543221 122333333444444444444444444555555555555
Q ss_pred HHHHhHHHHHhHHHhhhhhcccccchhhHHHHHHHhhhhccccchhhhhh-------hHhhhHhHh----HhhHHHHHHh
Q 002212 656 EMQERKALVDNKLMALKYSLSSFSSSAAYFEQRAARSRARVTTSSTYLNQ-------KKEQLVHLE----CCKREIEDAL 724 (953)
Q Consensus 656 ~~~~~~~~~~~k~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~-------k~~~l~~l~----~~k~~~~~~~ 724 (953)
+.|.+-.-+..+...+.-++ . +......+++...+.+++ .+.++..|. ....+.+...
T Consensus 861 ~Lq~ki~el~~~klkl~~~l----------~-~r~~le~~L~el~~el~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 929 (1311)
T TIGR00606 861 HLKSKTNELKSEKLQIGTNL----------Q-RRQQFEEQLVELSTEVQSLIREIKDAKEQDSPLETFLEKDQQEKEELI 929 (1311)
T ss_pred HHHHHHHHHHHHHHHHHHHH----------H-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHH
Confidence 55554444333332222110 0 111111122222222211 222222221 1112222222
Q ss_pred hhhhhhHHHHHHhHHHHHhHhHHHhhhcccceeeEeeccccccCCcccccccccchhhhhcc-------HHHHhhhHHHH
Q 002212 725 GKVQRSEAELRNNLALLKSKLEEENRRQENEKVLFAIDNIEKVDHPQRNWNLGGKATELLKS-------EEEKTKLQTEL 797 (953)
Q Consensus 725 ~~~~~~e~e~~~~~~~~k~k~~~e~~~~e~e~vl~~idn~~~~~~~~~~~~~~gka~~llk~-------ee~~~kl~~e~ 797 (953)
...+..+.++...+..++..+. .+..+......+...|.+..|=.. +..-..+++++
T Consensus 930 ~~~~~~~~~~~~~~~~~~~~~~----------------~~~~~~~~i~~y~~~~~~~qL~~~e~el~~~~~~ie~le~e~ 993 (1311)
T TIGR00606 930 SSKETSNKKAQDKVNDIKEKVK----------------NIHGYMKDIENKIQDGKDDYLKQKETELNTVNAQLEECEKHQ 993 (1311)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH----------------HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333344444445544444443 222222222333333333332222 22335577777
Q ss_pred HHHhhhhhhhHHHhhhhhhhhccchhhHHHH--HHHHHhhhhhHHH
Q 002212 798 KLCRERLGVVKREFEDLTKKSWKIDSDLQTV--QMEIQKSSRSVEE 841 (953)
Q Consensus 798 k~~~e~l~~~~~e~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~e 841 (953)
.....++..++++|.+++..-.++...|..+ +.++..--..+.+
T Consensus 994 ~~l~~~i~~l~kel~~~~~~kr~l~dnL~~~~~~~~l~el~~eI~~ 1039 (1311)
T TIGR00606 994 EKINEDMRLMRQDIDTQKIQERWLQDNLTLRKRENELKEVEEELKQ 1039 (1311)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 7777777777777777777666666666655 4444443333333
No 34
>TIGR00606 rad50 rad50. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=98.00 E-value=0.14 Score=66.11 Aligned_cols=53 Identities=21% Similarity=0.214 Sum_probs=37.4
Q ss_pred HHHHHHhhHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHhhccCchhhhhhh
Q 002212 356 LRMQAIHNQAEMETLRKQLEFSLDEKEKLERHVSDLVKKLEEQTCPISAKEET 408 (953)
Q Consensus 356 Lr~~~~~~~~El~~~~k~l~~clEen~kl~r~i~~L~~el~~~~~~~~~~~~~ 408 (953)
.+.++.....++..+...+..|......+.+.+..|+.+-+.+..........
T Consensus 317 ~~~~~~~le~e~~~l~~el~~l~~~~~~l~~e~gkl~~~~~~~~~~~~~~~~~ 369 (1311)
T TIGR00606 317 KERELVDCQRELEKLNKERRLLNQEKTELLVEQGRLQLQADRHQEHIRARDSL 369 (1311)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455566677777777888888888888888888888777776666443333
No 35
>TIGR02169 SMC_prok_A chromosome segregation protein SMC, primarily archaeal type. SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent.
Probab=97.98 E-value=0.11 Score=64.32 Aligned_cols=12 Identities=25% Similarity=0.481 Sum_probs=8.5
Q ss_pred CCCchhhhhhhh
Q 002212 87 YRDSKLTFLLQD 98 (953)
Q Consensus 87 YRDSKLTrLLQD 98 (953)
+|.++++.++.+
T Consensus 55 ~r~~~~~~~i~~ 66 (1164)
T TIGR02169 55 MRAERLSDLISN 66 (1164)
T ss_pred hhhhhHHHhhcc
Confidence 577777777766
No 36
>KOG0161 consensus Myosin class II heavy chain [Cytoskeleton]
Probab=97.92 E-value=0.23 Score=66.10 Aligned_cols=404 Identities=20% Similarity=0.190 Sum_probs=187.3
Q ss_pred HHHHHHHHHHHHhHHHHHHHhhHHHHHhhhHHHHHHHHhhhcCCccccccccccccchhhcccccc---ccccchhhhch
Q 002212 507 REAENLELQLAEMNEENEKLLGLYEKAMQERDEFKRMISLCGQNRAEASGEIYCPEKLVEIDGEAA---FADMETEQLNL 583 (953)
Q Consensus 507 ~~~~~L~~ql~e~~~en~kl~~lye~am~e~d~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~ 583 (953)
..+.+|.-|+++....+.++-.-|...=.|.+++-.-+..-+.. +.+..+..+..|.-..+. -++.+-...++
T Consensus 1189 ~~~~el~~qle~l~~~k~~lekek~~lq~e~~~l~~ev~~~~~~----k~~~e~~~k~~E~~l~elq~k~~~~~~~~~~l 1264 (1930)
T KOG0161|consen 1189 DSLAELQEQLEQLQKDKAKLEKEKSDLQREIADLAAELEQLSSE----KKDLEKKDKKLEAQLSELQLKLDEQERLRNDL 1264 (1930)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh----hccHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34566666777777777777666666666666666655432222 111222223333211110 00000000111
Q ss_pred --hhhhhhhhHHHHHHHHHHHHHHhhhhhhhhhhhh-hHHHHhhhHhhhhhhhHhhhhhHHHHHHhhhhhhHHhhHHHHh
Q 002212 584 --ANIKVTEDLNLVRLKLEKAQEKLSDSANTITLFG-SVEKAFAEVDKLSGDIVAMEDSIQAKQQQCGSLKHLCSEMQER 660 (953)
Q Consensus 584 --~~~~~~~~l~~~~~k~~~~~~~~~~~~~~~~~~~-~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 660 (953)
-...+.....-+-.-++....+++.+.+....|. -++..--+.++-.+.-......++.-+.++..|...+.+-++-
T Consensus 1265 ~~q~~~l~~E~~~l~~~lee~e~~~~~~~r~~~~~~~qle~~k~qle~e~r~k~~l~~~l~~l~~e~~~l~e~leee~e~ 1344 (1930)
T KOG0161|consen 1265 TAKRSRLQNENEELSRQLEEAEAKLSALSRDKQALESQLEELKRQLEEETREKSALENALRQLEHELDLLREQLEEEQEA 1344 (1930)
T ss_pred HHHHHHhhhhHHHHhhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 1112222222222335555556666666554443 3555566666667777777888888888999999999999999
Q ss_pred HHHHHhHHHhhhhhcccccchhhHHHHHHHhhhhccccchh----hhh-hhHhhhHhHhHhhHHHHHHhhhhhhhH---H
Q 002212 661 KALVDNKLMALKYSLSSFSSSAAYFEQRAARSRARVTTSST----YLN-QKKEQLVHLECCKREIEDALGKVQRSE---A 732 (953)
Q Consensus 661 ~~~~~~k~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~----~~~-~k~~~l~~l~~~k~~~~~~~~~~~~~e---~ 732 (953)
++.+.+++|...-- -+.++++++.+.- -++ -||.-...++.+...++.|-.++-.-| .
T Consensus 1345 ~~~l~r~lsk~~~e--------------~~~~~~k~e~~~~~~~eelee~kk~l~~~lq~~qe~~e~~~~~~~~Lek~k~ 1410 (1930)
T KOG0161|consen 1345 KNELERKLSKANAE--------------LAQWKKKFEEEVLQRLEELEELKKKLQQRLQELEEQIEAANAKNASLEKAKN 1410 (1930)
T ss_pred HHHHHHHHHHHHHH--------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999988654211 2223333333322 122 223323344454444444433322111 1
Q ss_pred HHHHhHHHHHhHhHHHhhhcccceeeEeeccccccCCcccccccccchhhhhccHHHHhhhHHHHHHH-------hhhhh
Q 002212 733 ELRNNLALLKSKLEEENRRQENEKVLFAIDNIEKVDHPQRNWNLGGKATELLKSEEEKTKLQTELKLC-------RERLG 805 (953)
Q Consensus 733 e~~~~~~~~k~k~~~e~~~~e~e~vl~~idn~~~~~~~~~~~~~~gka~~llk~ee~~~kl~~e~k~~-------~e~l~ 805 (953)
.|+.-+..+-+.++.-+ =++-.++ .+-..++|+-.-.|.- ..++++|+.-+ ...+-
T Consensus 1411 ~l~~el~d~~~d~~~~~---------~~~~~le------~k~k~f~k~l~e~k~~--~e~l~~Eld~aq~e~r~~~tel~ 1473 (1930)
T KOG0161|consen 1411 RLQQELEDLQLDLERSR---------AAVAALE------KKQKRFEKLLAEWKKK--LEKLQAELDAAQRELRQLSTELQ 1473 (1930)
T ss_pred HHHhHHHHHHHHHHHHH---------HHHHHHH------HHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHhHHHHH
Confidence 11222222222221110 0000000 0000111111111111 11222222222 22222
Q ss_pred hhHHHhhhhhhhhccchhhHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHhchhhHHHHHHHHhhhhhhhhhh-
Q 002212 806 VVKREFEDLTKKSWKIDSDLQTVQMEIQKSSRSVEEMELAHQAVLQEQEALLEIREKGKTEIESMILEYMQHVFEADLK- 884 (953)
Q Consensus 806 ~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~f~~~l~- 884 (953)
.++..++.+....+-+..+-..++.+|.++-.++.| ..+.+++.+....--+.-..|++.-|.|+....-..+.+
T Consensus 1474 kl~~~lee~~e~~e~l~renk~l~~ei~dl~~~~~e----~~k~v~elek~~r~le~e~~elQ~aLeElE~~le~eE~~~ 1549 (1930)
T KOG0161|consen 1474 KLKNALEELLEQLEELRRENKNLSQEIEDLEEQKDE----GGKRVHELEKEKRRLEQEKEELQAALEELEAALEAEEDKK 1549 (1930)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHH
Confidence 333333333332333333444444455544444443 334444444444555555566777777766542222211
Q ss_pred -------HHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhhhhcc-ccch--hhhHHHHHHHHHHHHHHHhhh
Q 002212 885 -------EAEMRIVEEELQLELRRMDELRVLRAAAAEKKAQLLEHTK-SKSC--LFSEKMQEELKNVWSYLFEAK 949 (953)
Q Consensus 885 -------~~e~~~~~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~-~~~~--~~~~k~~~~~~~~~~~~~e~~ 949 (953)
.+-..-.++.|+-....+++.+.......+.+...|..-+ ..+. -.--|+++|+.-+.+++..|-
T Consensus 1550 lr~~~~~~~~r~e~er~l~ek~Ee~E~~rk~~~~~i~~~q~~Le~E~r~k~e~~r~KKkle~di~elE~~ld~an 1624 (1930)
T KOG0161|consen 1550 LRLQLELQQLRSEIERRLQEKDEEIEELRKNLQRQLESLQAELEAETRSKSEALRSKKKLEGDINELEIQLDHAN 1624 (1930)
T ss_pred HHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhhhhhhcchHHHHHHHHHHH
Confidence 1222334455666666677777777777777777666442 2221 223468888888888777653
No 37
>KOG0161 consensus Myosin class II heavy chain [Cytoskeleton]
Probab=97.78 E-value=0.39 Score=64.12 Aligned_cols=162 Identities=19% Similarity=0.210 Sum_probs=94.1
Q ss_pred hHhhhhhhhHhhhhhHHHHHHhhhhhhHHhhHHHHhHHHHHhHHHhhhhhcccccchhhHHHHHHHhhhhccccchhhhh
Q 002212 625 EVDKLSGDIVAMEDSIQAKQQQCGSLKHLCSEMQERKALVDNKLMALKYSLSSFSSSAAYFEQRAARSRARVTTSSTYLN 704 (953)
Q Consensus 625 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~k~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~ 704 (953)
+++.+.+.=+..+..-+.-|.++..|....+...-++.=.+++-.++.-+|++...=.+= ....++..+.-..
T Consensus 1197 qle~l~~~k~~lekek~~lq~e~~~l~~ev~~~~~~k~~~e~~~k~~E~~l~elq~k~~~-------~~~~~~~l~~q~~ 1269 (1930)
T KOG0161|consen 1197 QLEQLQKDKAKLEKEKSDLQREIADLAAELEQLSSEKKDLEKKDKKLEAQLSELQLKLDE-------QERLRNDLTAKRS 1269 (1930)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHH
Confidence 344444444444444455555555566555555555554555444444333222111110 0001112223344
Q ss_pred hhHhhhHhHhHhhHHHHHHhhhhhhhHHHHHHhHHHHHhHhHHHhhhcccceeeEeeccccccCCcccccccccchhhhh
Q 002212 705 QKKEQLVHLECCKREIEDALGKVQRSEAELRNNLALLKSKLEEENRRQENEKVLFAIDNIEKVDHPQRNWNLGGKATELL 784 (953)
Q Consensus 705 ~k~~~l~~l~~~k~~~~~~~~~~~~~e~e~~~~~~~~k~k~~~e~~~~e~e~vl~~idn~~~~~~~~~~~~~~gka~~ll 784 (953)
+...++..|...-.+.++..-.+......+...|..+|+.++++.+++ .+=|+.+.
T Consensus 1270 ~l~~E~~~l~~~lee~e~~~~~~~r~~~~~~~qle~~k~qle~e~r~k------------------------~~l~~~l~ 1325 (1930)
T KOG0161|consen 1270 RLQNENEELSRQLEEAEAKLSALSRDKQALESQLEELKRQLEEETREK------------------------SALENALR 1325 (1930)
T ss_pred HhhhhHHHHhhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------------------------HHHHHHHH
Confidence 455566666666666666666667777788889999999999988876 45577788
Q ss_pred ccHHHHhhhHHHHHHHhhhhhhhHHHhhhhhhh
Q 002212 785 KSEEEKTKLQTELKLCRERLGVVKREFEDLTKK 817 (953)
Q Consensus 785 k~ee~~~kl~~e~k~~~e~l~~~~~e~~~~~~~ 817 (953)
..+.|...|+..+.-..+-..-+.+.+...+..
T Consensus 1326 ~l~~e~~~l~e~leee~e~~~~l~r~lsk~~~e 1358 (1930)
T KOG0161|consen 1326 QLEHELDLLREQLEEEQEAKNELERKLSKANAE 1358 (1930)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 888888888888877777766666666555443
No 38
>KOG0933 consensus Structural maintenance of chromosome protein 2 (chromosome condensation complex Condensin, subunit E) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=97.71 E-value=0.31 Score=61.06 Aligned_cols=176 Identities=19% Similarity=0.286 Sum_probs=125.3
Q ss_pred HHHHhHHHHHhHhHH-----HhhhcccceeeEeeccccc-cCCcccccccccchhhhhccHHHHhhhHHHHHHHhhhhhh
Q 002212 733 ELRNNLALLKSKLEE-----ENRRQENEKVLFAIDNIEK-VDHPQRNWNLGGKATELLKSEEEKTKLQTELKLCRERLGV 806 (953)
Q Consensus 733 e~~~~~~~~k~k~~~-----e~~~~e~e~vl~~idn~~~-~~~~~~~~~~~gka~~llk~ee~~~kl~~e~k~~~e~l~~ 806 (953)
+|-++|..+|.++++ |-++.+-|.+..-++-+.+ +++....|+..-+..+.|+++=. +|-+.+.....-.--
T Consensus 791 dl~keik~~k~~~e~~~~~~ek~~~e~e~l~lE~e~l~~e~~~~k~~l~~~~~~~~~l~~e~~--~l~~kv~~~~~~~~~ 868 (1174)
T KOG0933|consen 791 DLEKEIKTAKQRAEESSKELEKRENEYERLQLEHEELEKEISSLKQQLEQLEKQISSLKSELG--NLEAKVDKVEKDVKK 868 (1174)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHhHHhHHHH
Confidence 455667777777766 3345556677777776665 67777888888888888887644 344555555555556
Q ss_pred hHHHhhhhhhhhccchhhHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHhchhhHHHHHHHHh-----hhhh--
Q 002212 807 VKREFEDLTKKSWKIDSDLQTVQMEIQKSSRSVEEMELAHQAVLQEQEALLEIREKGKTEIESMILEYM-----QHVF-- 879 (953)
Q Consensus 807 ~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~-----~~~f-- 879 (953)
.+.|+.+..++.-++|.+|...-.++++|+.-...+++.+++..++-..+-.=..++.++|++|.-+|- ...|
T Consensus 869 ~~~el~~~k~k~~~~dt~i~~~~~~~e~~~~e~~~~~l~~kkle~e~~~~~~e~~~~~k~v~~l~~k~~wi~~ek~~fgk 948 (1174)
T KOG0933|consen 869 AQAELKDQKAKQRDIDTEISGLLTSQEKCLSEKSDGELERKKLEHEVTKLESEKANARKEVEKLLKKHEWIGDEKRLFGK 948 (1174)
T ss_pred HHHHHHHHHHHHHhhhHHHhhhhhHHHHHHHHhhcccchHHHHHhHHHHhhhhHHHHHHHHHHHHHhccchhHHHHhhcC
Confidence 667777777778888888888888888888888888899999998888888888889999999987763 2233
Q ss_pred ---hhhhhHHHHHHHHHHHHHHHHhhHHHHHHHH
Q 002212 880 ---EADLKEAEMRIVEEELQLELRRMDELRVLRA 910 (953)
Q Consensus 880 ---~~~l~~~e~~~~~e~l~~~~~~~~~~~~~~~ 910 (953)
.||+.-.....++++|..=.-..+.|+...+
T Consensus 949 ~gt~yDf~~~~p~~are~l~~Lq~k~~~l~k~vn 982 (1174)
T KOG0933|consen 949 KGTDYDFESYDPHEAREELKKLQEKKEKLEKTVN 982 (1174)
T ss_pred CCCccccccCCHhHHHHHHHHhhHHHHHHHhhcC
Confidence 3666666667777776654444455544433
No 39
>PRK02224 chromosome segregation protein; Provisional
Probab=97.59 E-value=0.39 Score=59.04 Aligned_cols=43 Identities=14% Similarity=0.291 Sum_probs=21.4
Q ss_pred HhhhHHHHHHHhhhhhhhHHHhhhhhhhhccchhhHHHHHHHH
Q 002212 790 KTKLQTELKLCRERLGVVKREFEDLTKKSWKIDSDLQTVQMEI 832 (953)
Q Consensus 790 ~~kl~~e~k~~~e~l~~~~~e~~~~~~~~~~~~~~~~~~~~~~ 832 (953)
...+..++...++.++.+...++.+......+..+|..++..+
T Consensus 648 ~e~l~~~~~~~~~~~~~l~~~l~~~~~~~~~l~~~i~~~~~~~ 690 (880)
T PRK02224 648 IEEAREDKERAEEYLEQVEEKLDELREERDDLQAEIGAVENEL 690 (880)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3345555555555555555555555444444444554444433
No 40
>PRK02224 chromosome segregation protein; Provisional
Probab=97.59 E-value=0.4 Score=58.99 Aligned_cols=38 Identities=18% Similarity=0.222 Sum_probs=19.9
Q ss_pred HHhhHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHhh
Q 002212 360 AIHNQAEMETLRKQLEFSLDEKEKLERHVSDLVKKLEE 397 (953)
Q Consensus 360 ~~~~~~El~~~~k~l~~clEen~kl~r~i~~L~~el~~ 397 (953)
+.+.+.++..+...+..+......+...+..+.....+
T Consensus 208 l~~~~~~l~el~~~i~~~~~~~~~l~~~l~~l~~~~~e 245 (880)
T PRK02224 208 LNGLESELAELDEEIERYEEQREQARETRDEADEVLEE 245 (880)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444555555555555555555555555555444433
No 41
>TIGR02168 SMC_prok_B chromosome segregation protein SMC, common bacterial type. SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle.
Probab=97.42 E-value=0.66 Score=57.49 Aligned_cols=45 Identities=16% Similarity=0.303 Sum_probs=19.6
Q ss_pred HHHHHHhhhhhhhHHHhhhhhhhhccchhhHHHHHHHHHhhhhhH
Q 002212 795 TELKLCRERLGVVKREFEDLTKKSWKIDSDLQTVQMEIQKSSRSV 839 (953)
Q Consensus 795 ~e~k~~~e~l~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 839 (953)
.++...+.++..+..++..+.+....+..++..++.++...-..+
T Consensus 817 ~~l~~~~~~~~~l~~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~ 861 (1179)
T TIGR02168 817 EEAANLRERLESLERRIAATERRLEDLEEQIEELSEDIESLAAEI 861 (1179)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333344444444444444444444444444444444433333
No 42
>KOG0976 consensus Rho/Rac1-interacting serine/threonine kinase Citron [Signal transduction mechanisms]
Probab=97.29 E-value=0.82 Score=56.30 Aligned_cols=264 Identities=22% Similarity=0.219 Sum_probs=147.2
Q ss_pred chhhhHHHHHHHHhhHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHhhccCchhhhhhhhcccccCCCccccchhhHHH
Q 002212 349 VNEENEFLRMQAIHNQAEMETLRKQLEFSLDEKEKLERHVSDLVKKLEEQTCPISAKEETQGFQLSTNVPTINFDDQVEL 428 (953)
Q Consensus 349 ~~~Ene~Lr~~~~~~~~El~~~~k~l~~clEen~kl~r~i~~L~~el~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~e~ 428 (953)
+.+.-.+|.+-++-+..-+..+.-.-+.--.+.+.++..|..++.+|+..++..-.+- +..+...+|.-.+-|++
T Consensus 254 i~E~d~~lq~sak~ieE~m~qlk~kns~L~~ElSqkeelVk~~qeeLd~lkqt~t~a~-----gdseqatkylh~enmkl 328 (1265)
T KOG0976|consen 254 IEEQDMDLQASAKEIEEKMRQLKAKNSVLGDELSQKEELVKELQEELDTLKQTRTRAD-----GDSEQATKYLHLENMKL 328 (1265)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHhh-----ccHHHHHHHHHHHHHHH
Confidence 3444455555555444444444444444456777777888888888887776554332 23345555766677777
Q ss_pred HHHHHHHHHhhhhHHHhhhhhhhccccchhhHHHHHHHHhhhhhhhhccHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHH
Q 002212 429 KTMVDAIAVASQREAEAHQTAIGLSKMHDELRLELEVLNKEKSEFNKLNDELQLKHKVLIEEKSNLIELYERKEMEMKRE 508 (953)
Q Consensus 429 kt~v~aia~asq~~~e~~~~~i~l~k~~~~~~~~~e~~~~~~~e~~~ln~e~~~~~~~l~e~~~~l~~~~~~~~~~~~~~ 508 (953)
+.=.-+|.+| =.|+.-|+=|+++- -++|..++-++..+- |.+++.++.
T Consensus 329 trqkadirc~---LlEarrk~egfddk---------------------~~eLEKkrd~al~dv--------r~i~e~k~n 376 (1265)
T KOG0976|consen 329 TRQKADIRCA---LLEARRKAEGFDDK---------------------LNELEKKRDMALMDV--------RSIQEKKEN 376 (1265)
T ss_pred HHHHHHHHHH---HHHHHHhhcchhHH---------------------HHHHHHHHHHHHHhH--------HHHHHHHHH
Confidence 7666666554 35555555555544 445555555554442 345566666
Q ss_pred HHHHHHHHHHhHHHHHHHhhHHHHHhhhHHHHHHHHhhhcCCccccccccccccchhhccccccccccchhhhchhhhhh
Q 002212 509 AENLELQLAEMNEENEKLLGLYEKAMQERDEFKRMISLCGQNRAEASGEIYCPEKLVEIDGEAAFADMETEQLNLANIKV 588 (953)
Q Consensus 509 ~~~L~~ql~e~~~en~kl~~lye~am~e~d~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 588 (953)
+.++-.-|-++.++-+.=| |++|-.++.+.+.+.
T Consensus 377 ve~elqsL~~l~aerqeQi----------delKn~if~~e~~~~------------------------------------ 410 (1265)
T KOG0976|consen 377 VEEELQSLLELQAERQEQI----------DELKNHIFRLEQGKK------------------------------------ 410 (1265)
T ss_pred HHHHHHHHHHHHHHHHHHH----------HHHHHhhhhhhhccc------------------------------------
Confidence 6655555555444444333 888888888666611
Q ss_pred hhhHHHHHHHHHHHHHHhhhhhhhhhhhhhHHHHhhhHhhhhhhhHhhhhhHHHHHHhhhhhhHHhhHHHHhHHHHHhHH
Q 002212 589 TEDLNLVRLKLEKAQEKLSDSANTITLFGSVEKAFAEVDKLSGDIVAMEDSIQAKQQQCGSLKHLCSEMQERKALVDNKL 668 (953)
Q Consensus 589 ~~~l~~~~~k~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~k~ 668 (953)
+-.+.|..++++++|-.++-.-+
T Consensus 411 ---------------------------------------------------------dhe~~kneL~~a~ekld~mgthl 433 (1265)
T KOG0976|consen 411 ---------------------------------------------------------DHEAAKNELQEALEKLDLMGTHL 433 (1265)
T ss_pred ---------------------------------------------------------hhHHHHHHHHHHHHHHHHHhHHH
Confidence 11233445555666666666677
Q ss_pred HhhhhhcccccchhhHHHHHHHhhhhccccchhhh--------hhhHhhhHhHhHhhHHHHHHhhhhhhhHHHHHHhHHH
Q 002212 669 MALKYSLSSFSSSAAYFEQRAARSRARVTTSSTYL--------NQKKEQLVHLECCKREIEDALGKVQRSEAELRNNLAL 740 (953)
Q Consensus 669 ~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~--------~~k~~~l~~l~~~k~~~~~~~~~~~~~e~e~~~~~~~ 740 (953)
+-+.|-+|||-+--+--+---.+|-..-|-...++ +|+|-++ .+.-.|-+.+.--.|+..-+-+|..-.-.
T Consensus 434 ~mad~Q~s~fk~Lke~aegsrrraIeQcnemv~rir~l~~sle~qrKVeq-e~emlKaen~rqakkiefmkEeiQethld 512 (1265)
T KOG0976|consen 434 SMADYQLSNFKVLKEHAEGSRRRAIEQCNEMVDRIRALMDSLEKQRKVEQ-EYEMLKAENERQAKKIEFMKEEIQETHLD 512 (1265)
T ss_pred HHHHHHHhhHHHHHHhhhhhHhhHHHHHHHHHHHHHHHhhChhhhcchHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 77778888874332221111122222222222222 2333222 24445666666667777777777777777
Q ss_pred HHhHhHHHhhhcc
Q 002212 741 LKSKLEEENRRQE 753 (953)
Q Consensus 741 ~k~k~~~e~~~~e 753 (953)
+.+-+.+-+.|+-
T Consensus 513 yR~els~lA~r~a 525 (1265)
T KOG0976|consen 513 YRSELSELAHRKA 525 (1265)
T ss_pred HHHHHHHHhhccC
Confidence 7777777666653
No 43
>TIGR02169 SMC_prok_A chromosome segregation protein SMC, primarily archaeal type. SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent.
Probab=97.20 E-value=1.1 Score=55.77 Aligned_cols=24 Identities=21% Similarity=0.097 Sum_probs=9.9
Q ss_pred HHHHHHHHHHHHHHhhHHHHHHHH
Q 002212 887 EMRIVEEELQLELRRMDELRVLRA 910 (953)
Q Consensus 887 e~~~~~e~l~~~~~~~~~~~~~~~ 910 (953)
+...+.+++..-....++|...+.
T Consensus 980 ~~~~~~~~~~~l~~q~~dl~~~~~ 1003 (1164)
T TIGR02169 980 EYEEVLKRLDELKEKRAKLEEERK 1003 (1164)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444444444444444444333
No 44
>PF00261 Tropomyosin: Tropomyosin; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells. In striated muscle, tropomyosin mediate the interactions between the troponin complex and actin so as to regulate muscle contraction []. The role of tropomyosin in smooth muscle and non-muscle tissues is not clear. Tropomyosin is an alpha-helical protein that forms a coiled-coil structure of 2 parallel helices containing 2 sets of 7 alternating actin binding sites []. There are multiple cell-specific isoforms, created by differential splicing of the messenger RNA from one gene, but the proportions of the isoforms vary between different cell types. Muscle isoforms of tropomyosin are characterised by having 284 amino acid residues and a highly conserved N-terminal region, whereas non-muscle forms are generally smaller and are heterogeneous in their N-terminal region. This entry represents tropomyosin (Tmp) 1, 2 and 3. Within the yeast Tmp1 and Tmp2, biochemical and sequence analyses indicate that Tpm2 spans four actin monomers along a filament, whereas Tpm1 spans five. Despite its shorter length, Tpm2 can compete with Tpm1 for binding to F-actin. Over-expression of Tpm2 in vivo alters the axial budding of haploids to a bipolar pattern, and this can be partially suppressed by co-over-expression of Tpm1. This suggests distinct functions for the two tropomyosins, and indicates that the ratio between them is important for correct morphogenesis [].; PDB: 2EFR_A 2Z5H_C 2Z5I_D 2D3E_B 2EFS_D 3U59_B 1C1G_C 1IHQ_A 3AZD_B 1MV4_B ....
Probab=96.67 E-value=0.39 Score=51.16 Aligned_cols=227 Identities=24% Similarity=0.310 Sum_probs=154.2
Q ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHhhHHHHHhhhHHHHHHHHhhhcCCccccccccccccchhhccccccccccchhhh
Q 002212 502 EMEMKREAENLELQLAEMNEENEKLLGLYEKAMQERDEFKRMISLCGQNRAEASGEIYCPEKLVEIDGEAAFADMETEQL 581 (953)
Q Consensus 502 ~~~~~~~~~~L~~ql~e~~~en~kl~~lye~am~e~d~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 581 (953)
++.++..+.+.+.++..+...-...-.-.++|-.+=+.+.|+|..-.+.
T Consensus 3 ~~~l~~eld~~~~~~~~~~~~l~~~~~~~~~aE~e~~~l~rri~~lE~~------------------------------- 51 (237)
T PF00261_consen 3 IQQLKDELDEAEERLEEAEEKLKEAEKRAEKAEAEVASLQRRIQLLEEE------------------------------- 51 (237)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC-------------------------------
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------------------------------
Confidence 3444445555555555555555555555667777777888888654333
Q ss_pred chhhhhhhhhHHHHHHHHHHHHHHhhhhhhhhhhhhhHHHHhhhHhhhhhhhHhhhhhHHHHHHhhhhhhHHhhHHHHhH
Q 002212 582 NLANIKVTEDLNLVRLKLEKAQEKLSDSANTITLFGSVEKAFAEVDKLSGDIVAMEDSIQAKQQQCGSLKHLCSEMQERK 661 (953)
Q Consensus 582 ~~~~~~~~~~l~~~~~k~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 661 (953)
|+.++++|..+... |+.+-..+|+..+.....+......-..+..|...+.++..+-
T Consensus 52 -----------------le~~eerL~~~~~k------L~~~e~~~de~er~~k~lE~r~~~~eeri~~lE~~l~ea~~~~ 108 (237)
T PF00261_consen 52 -----------------LERAEERLEEATEK------LEEAEKRADESERARKVLENREQSDEERIEELEQQLKEAKRRA 108 (237)
T ss_dssp -----------------CHHHHCCCCHHHHH------HHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHH
T ss_pred -----------------HHhHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44444444443222 3344445556666666666666666666666666666666666
Q ss_pred HHHHhHHHhhhhhcccccchhhHHHHHHHhhhhccccchhhhhhhHhhhHhHhHhhHHHHHHhhhhhhhHHHHHHhHHHH
Q 002212 662 ALVDNKLMALKYSLSSFSSSAAYFEQRAARSRARVTTSSTYLNQKKEQLVHLECCKREIEDALGKVQRSEAELRNNLALL 741 (953)
Q Consensus 662 ~~~~~k~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~l~~l~~~k~~~~~~~~~~~~~e~e~~~~~~~~ 741 (953)
.=++.||....- -....+.+-.+|..|++.+-+-+..-.++|..+-..-+.++++.+++.+-+..+...|..|
T Consensus 109 ee~e~k~~E~~r-------kl~~~E~~Le~aEeR~e~~E~ki~eLE~el~~~~~~lk~lE~~~~~~~~re~~~e~~i~~L 181 (237)
T PF00261_consen 109 EEAERKYEEVER-------KLKVLEQELERAEERAEAAESKIKELEEELKSVGNNLKSLEASEEKASEREDEYEEKIRDL 181 (237)
T ss_dssp HHHHHHHHHCHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH-------HHHHHHHHHHHHHHHHhhhchhHHHHHHHHHHHHHHHHHhhhhhhhhhHHHHHHHHHHHHH
Confidence 666666643222 1234556667888899999999999999999999999999999999999999999999999
Q ss_pred HhHhHH-HhhhcccceeeEeeccccccCCcccccccccchhhhhccHHHHhhhHHHHHHHhhhhhhhHHHhhhh
Q 002212 742 KSKLEE-ENRRQENEKVLFAIDNIEKVDHPQRNWNLGGKATELLKSEEEKTKLQTELKLCRERLGVVKREFEDL 814 (953)
Q Consensus 742 k~k~~~-e~~~~e~e~vl~~idn~~~~~~~~~~~~~~gka~~llk~ee~~~kl~~e~k~~~e~l~~~~~e~~~~ 814 (953)
..+|.+ ++|....|+- .-+.+..--.|..++..-+++...|++|++..
T Consensus 182 ~~~lkeaE~Rae~aE~~-------------------------v~~Le~~id~le~eL~~~k~~~~~~~~eld~~ 230 (237)
T PF00261_consen 182 EEKLKEAENRAEFAERR-------------------------VKKLEKEIDRLEDELEKEKEKYKKVQEELDQT 230 (237)
T ss_dssp HHHHHHHHHHHHHHHHH-------------------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH-------------------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999 7765554431 22446667778888888888888888888764
No 45
>TIGR02168 SMC_prok_B chromosome segregation protein SMC, common bacterial type. SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle.
Probab=96.58 E-value=3.3 Score=51.54 Aligned_cols=12 Identities=17% Similarity=0.249 Sum_probs=6.2
Q ss_pred CCCCchhhhhhh
Q 002212 86 PYRDSKLTFLLQ 97 (953)
Q Consensus 86 PYRDSKLTrLLQ 97 (953)
..|.+++..++.
T Consensus 54 ~~r~~~~~~~i~ 65 (1179)
T TIGR02168 54 ALRGGKMEDVIF 65 (1179)
T ss_pred hhhhccchhhhc
Confidence 345555555544
No 46
>PF10174 Cast: RIM-binding protein of the cytomatrix active zone; InterPro: IPR019323 This entry represents a family of proteins that form part of the CAZ (cytomatrix at the active zone) complex which is involved in determining the site of synaptic vesicle fusion []. Located at the C terminus is a PDZ-binding motif that binds directly to RIM (a small G protein Rab-3A effector). These proteins also contain four coiled-coil domains [].
Probab=96.58 E-value=3.4 Score=51.59 Aligned_cols=147 Identities=24% Similarity=0.361 Sum_probs=86.8
Q ss_pred hHHHHHHHHhhHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHhhccCchhhhhhhhcccccCCCccccchhhHHHHHHH
Q 002212 353 NEFLRMQAIHNQAEMETLRKQLEFSLDEKEKLERHVSDLVKKLEEQTCPISAKEETQGFQLSTNVPTINFDDQVELKTMV 432 (953)
Q Consensus 353 ne~Lr~~~~~~~~El~~~~k~l~~clEen~kl~r~i~~L~~el~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~e~kt~v 432 (953)
.+-+.+++.....|+..|+..+..-.+...-+..+|+.|+..|........-+-+.+
T Consensus 289 ~d~~~~eL~rk~~E~~~~qt~l~~~~~~~~d~r~hi~~lkesl~~ke~~~~~Lqsdv----------------------- 345 (775)
T PF10174_consen 289 MDRLKLELSRKKSELEALQTRLETLEEQDSDMRQHIEVLKESLRAKEQEAEMLQSDV----------------------- 345 (775)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhH-----------------------
Confidence 567888999999999999999998888888888899988887765544333222222
Q ss_pred HHHHHhhhhHHHhhhhhhhccccchhhHHHHHHHHhhhhhhhhccHHHHHHHHH---HHHhhhhhhHHHHHHHHHHHHHH
Q 002212 433 DAIAVASQREAEAHQTAIGLSKMHDELRLELEVLNKEKSEFNKLNDELQLKHKV---LIEEKSNLIELYERKEMEMKREA 509 (953)
Q Consensus 433 ~aia~asq~~~e~~~~~i~l~k~~~~~~~~~e~~~~~~~e~~~ln~e~~~~~~~---l~e~~~~l~~~~~~~~~~~~~~~ 509 (953)
|.||..||-.+.--+..++-+..+....-. =+++-+-.....+++++-+...+
T Consensus 346 ------------------------e~Lr~rle~k~~~l~kk~~~~~~~qeE~~~~~~Ei~~l~d~~d~~e~ki~~Lq~ki 401 (775)
T PF10174_consen 346 ------------------------EALRFRLEEKNSQLEKKQAQIEKLQEEKSRLQGEIEDLRDMLDKKERKINVLQKKI 401 (775)
T ss_pred ------------------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 233333333222111111111112111111 12222334445566677777777
Q ss_pred HHHHHHHHH----hHHHHHHHh------------hHHHHHhhhHHHHHHHHhh
Q 002212 510 ENLELQLAE----MNEENEKLL------------GLYEKAMQERDEFKRMISL 546 (953)
Q Consensus 510 ~~L~~ql~e----~~~en~kl~------------~lye~am~e~d~~~r~~~~ 546 (953)
.+|+-+|-+ +..++.+|- +=+|+|..+++-+.-.|..
T Consensus 402 e~Lee~l~ekd~ql~~~k~Rl~~~~d~~~~~~~~~~lEea~~eker~~e~l~e 454 (775)
T PF10174_consen 402 ENLEEQLREKDRQLDEEKERLSSQADSSNEDEALETLEEALREKERLQERLEE 454 (775)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhccccccchHHHHHHHHHHHHHHHHHHHHHHH
Confidence 777766633 455666666 6678888888877766643
No 47
>PF01576 Myosin_tail_1: Myosin tail; InterPro: IPR002928 Muscle contraction is caused by sliding between the thick and thin filaments of the myofibril. Myosin is a major component of thick filaments and exists as a hexamer of 2 heavy chains [], 2 alkali light chains, and 2 regulatory light chains. The heavy chain can be subdivided into the N-terminal globular head and the C-terminal coiled-coil rod-like tail, although some forms have a globular region in their C-terminal. There are many cell-specific isoforms of myosin heavy chains, coded for by a multi-gene family []. Myosin interacts with actin to convert chemical energy, in the form of ATP, to mechanical energy []. The 3-D structure of the head portion of myosin has been determined [] and a model for actin-myosin complex has been constructed []. This family consists of the coiled-coil myosin heavy chain tail region. The coiled-coil is composed of the tail from two molecules of myosin. These can then assemble into the macromolecular thick filament []. The coiled-coil region provides the structural backbone of the thick filament [].; GO: 0003774 motor activity, 0016459 myosin complex; PDB: 2LNK_C 3ZWH_Q.
Probab=96.47 E-value=0.00071 Score=83.28 Aligned_cols=234 Identities=23% Similarity=0.278 Sum_probs=0.0
Q ss_pred hhhhhhhhHHHHHHHHHHHHHHhhhhhhhhhhh-hhHHHHhhhHhhhhhhhHhhhhhHHHHHHhhhhhhHHhhHHHHhHH
Q 002212 584 ANIKVTEDLNLVRLKLEKAQEKLSDSANTITLF-GSVEKAFAEVDKLSGDIVAMEDSIQAKQQQCGSLKHLCSEMQERKA 662 (953)
Q Consensus 584 ~~~~~~~~l~~~~~k~~~~~~~~~~~~~~~~~~-~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 662 (953)
+...+..++.-+++.|+.++......-+...-| +.+...-..++++..+.....-.....+-++-.|+..+.+..+...
T Consensus 350 ~k~rL~~EleDl~~eLe~~~~~~~~LeKKqr~fDk~l~e~k~~~~~~~~e~d~~q~e~r~~~te~~~Lk~~lee~~e~~e 429 (859)
T PF01576_consen 350 TKKRLQGELEDLTSELEKAQAAAAELEKKQRKFDKQLAEWKAKVEELQAERDAAQREARELETELFKLKNELEELQEQLE 429 (859)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHhhhHHHHHHHH
Confidence 333455555555556666655444444433334 3444444555666666666666667777777788888888888877
Q ss_pred HHHhHHHhhhhhcccccchhhHHHHHHHhhhhccccchhhhhhhHh----hhHhHhHhhHHHHHHhh----hhhhhHHHH
Q 002212 663 LVDNKLMALKYSLSSFSSSAAYFEQRAARSRARVTTSSTYLNQKKE----QLVHLECCKREIEDALG----KVQRSEAEL 734 (953)
Q Consensus 663 ~~~~k~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~----~l~~l~~~k~~~~~~~~----~~~~~e~e~ 734 (953)
.+++.-..|.--+....+..+ ..+.+..-|.+-+. ++..|+..=.|+++++. +....+.
T Consensus 430 ~lere~k~L~~El~dl~~q~~-----------~~~k~v~eLek~kr~LE~e~~El~~~leE~E~~l~~~E~~~lRl~~-- 496 (859)
T PF01576_consen 430 ELERENKQLQDELEDLTSQLD-----------DAGKSVHELEKAKRRLEQEKEELQEQLEEAEDALEAEEQKKLRLQV-- 496 (859)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHHHHHhhccchhhhh-----------hhccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--
Confidence 777766555544444332211 11111111222111 12222222222332222 2222222
Q ss_pred HHhHHHHHhHhHHHhhhcccc------eeeEeeccccc-cCCcccccccccchhhhhccHHHHhhhHHHHHHHhhhhhhh
Q 002212 735 RNNLALLKSKLEEENRRQENE------KVLFAIDNIEK-VDHPQRNWNLGGKATELLKSEEEKTKLQTELKLCRERLGVV 807 (953)
Q Consensus 735 ~~~~~~~k~k~~~e~~~~e~e------~vl~~idn~~~-~~~~~~~~~~~gka~~llk~ee~~~kl~~e~k~~~e~l~~~ 807 (953)
++..+|..++-+.+-++.| ...-.|+++.. ++.-. -|++. + --.|.||..+|.-...+|...
T Consensus 497 --el~~~r~e~er~l~eKeeE~E~~Rr~~qr~l~~le~~LE~E~-----k~r~~-~---~r~kkKLE~~l~eLe~~ld~~ 565 (859)
T PF01576_consen 497 --ELQQLRQEIERELQEKEEEFEETRRNHQRQLESLEAELEEER-----KERAE-A---LREKKKLESDLNELEIQLDHA 565 (859)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --HHHHHHHHHHHHHHhhhhHHHHHHHhhHHHHHHHHhHHHHHH-----HHHHH-H---HHHHHHHHHHHHHHHHHHHHH
Confidence 2333444443333222222 11223344432 11111 11111 1 134567777777777777777
Q ss_pred HHHhhhhhhhhccchhhHHHHHHHHHhhhhhHHH
Q 002212 808 KREFEDLTKKSWKIDSDLQTVQMEIQKSSRSVEE 841 (953)
Q Consensus 808 ~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e 841 (953)
.+--.+..|...++...|..++.++...-+...+
T Consensus 566 n~~~~e~~k~~kk~q~qlkdlq~~lee~~~~~~~ 599 (859)
T PF01576_consen 566 NRANEEAQKQLKKLQAQLKDLQRELEEAQRAREE 599 (859)
T ss_dssp ----------------------------------
T ss_pred hHhHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHH
Confidence 7777777776777777777777777776655554
No 48
>KOG0996 consensus Structural maintenance of chromosome protein 4 (chromosome condensation complex Condensin, subunit C) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=96.40 E-value=5.1 Score=51.62 Aligned_cols=100 Identities=25% Similarity=0.313 Sum_probs=69.8
Q ss_pred hHhhhhhhhHhhhhhHHHHHHhhhhhhHHhhHHHHhHHHHHhHHHhhhhhcccccchhhHHHHHHHhhhhccccchhhhh
Q 002212 625 EVDKLSGDIVAMEDSIQAKQQQCGSLKHLCSEMQERKALVDNKLMALKYSLSSFSSSAAYFEQRAARSRARVTTSSTYLN 704 (953)
Q Consensus 625 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~k~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~ 704 (953)
.++++-+..+.+.+.+-+++.+...+....-+.-++-.-+...++-+--|...-.+-..|.+.+-+...+.++.-..--.
T Consensus 779 ~v~~le~~l~~~~~~~~~~~~~~~~~ee~~~~lr~~~~~l~~~l~~~~~~~k~~~~~~~~l~~~i~~~E~~~~k~~~d~~ 858 (1293)
T KOG0996|consen 779 SVEKLERALSKMSDKARQHQEQLHELEERVRKLRERIPELENRLEKLTASVKRLAELIEYLESQIAELEAAVLKKVVDKK 858 (1293)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCcHH
Confidence 56667777777777777888887777777777888888888888888888888899999999885555555444333333
Q ss_pred hhHhhhHhHhHhhHHHHHHh
Q 002212 705 QKKEQLVHLECCKREIEDAL 724 (953)
Q Consensus 705 ~k~~~l~~l~~~k~~~~~~~ 724 (953)
+.++--..+...++|++++.
T Consensus 859 ~l~~~~~~ie~l~kE~e~~q 878 (1293)
T KOG0996|consen 859 RLKELEEQIEELKKEVEELQ 878 (1293)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 33332233445567777764
No 49
>COG1196 Smc Chromosome segregation ATPases [Cell division and chromosome partitioning]
Probab=96.37 E-value=5.3 Score=51.59 Aligned_cols=31 Identities=23% Similarity=0.213 Sum_probs=14.8
Q ss_pred CcCCCCchhhhhhhhccCC----C-cceeEEeecCC
Q 002212 84 HVPYRDSKLTFLLQDSLGG----N-SKTIIIANISP 114 (953)
Q Consensus 84 HVPYRDSKLTrLLQDSLGG----N-SKT~mIa~VSP 114 (953)
.-..|.++++-|....=+. | |.+.++++-+.
T Consensus 53 ~k~lRa~~~~DlIf~g~~~r~~~~~A~V~l~fdN~d 88 (1163)
T COG1196 53 AKNLRASKMSDLIFAGSGNRKPANYAEVELTFDNSD 88 (1163)
T ss_pred hhhhhccCCcceeeCCCCCCCCCCceEEEEEEeCCC
Confidence 4445666666554222111 1 55556555554
No 50
>PRK03918 chromosome segregation protein; Provisional
Probab=96.32 E-value=4.3 Score=50.01 Aligned_cols=42 Identities=29% Similarity=0.381 Sum_probs=23.0
Q ss_pred HHHHHHHHHHHHHHHhHHHHHHHhhHHHHHhhhHHHHHHHHh
Q 002212 504 EMKREAENLELQLAEMNEENEKLLGLYEKAMQERDEFKRMIS 545 (953)
Q Consensus 504 ~~~~~~~~L~~ql~e~~~en~kl~~lye~am~e~d~~~r~~~ 545 (953)
.++..+.+++.+.+.+..+-.++-..+...=.+.++++..+.
T Consensus 388 ~l~~~l~~l~~~~~~l~~~i~~l~~~~~~~~~~i~eL~~~l~ 429 (880)
T PRK03918 388 KLEKELEELEKAKEEIEEEISKITARIGELKKEIKELKKAIE 429 (880)
T ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445555666655566665555555555544445555555543
No 51
>PF00038 Filament: Intermediate filament protein; InterPro: IPR016044 Intermediate filaments (IF) [, , ] are proteins which are primordial components of the cytoskeleton and the nuclear envelope. They generally form filamentous structures 8 to 14 nm wide. IF proteins are members of a very large multigene family of proteins which has been subdivided in five major subgroups: Type I: Acidic cytokeratins. Type II: Basic cytokeratins. Type III: Vimentin, desmin, glial fibrillary acidic protein (GFAP), peripherin, and plasticin. Type IV: Neurofilaments L, H and M, alpha-internexin and nestin. Type V: Nuclear lamins A, B1, B2 and C. All IF proteins are structurally similar in that they consist of: a central rod domain comprising some 300 to 350 residues which is arranged in coiled-coiled alpha-helices, with at least two short characteristic interruptions; a N-terminal non-helical domain (head) of variable length; and a C-terminal domain (tail) which is also non-helical, and which shows extreme length variation between different IF proteins. While IF proteins are evolutionary and structurally related, they have limited sequence homologies except in several regions of the rod domain. This entry represents the central rod domain found in IF proteins.; PDB: 3TNU_B 3KLT_D 1GK4_F 3TRT_A 3G1E_A 3UF1_C 1GK6_B 1GK7_A 3TYY_B 3V4W_A ....
Probab=96.24 E-value=2.3 Score=46.17 Aligned_cols=40 Identities=18% Similarity=0.282 Sum_probs=34.0
Q ss_pred HHHHHHHHHHHHhHHHHHHHhhHHHHHhhhHHHHHHHHhh
Q 002212 507 REAENLELQLAEMNEENEKLLGLYEKAMQERDEFKRMISL 546 (953)
Q Consensus 507 ~~~~~L~~ql~e~~~en~kl~~lye~am~e~d~~~r~~~~ 546 (953)
..+.+|..+++++..+|.+|..=..++..+-++||+++..
T Consensus 54 ~el~~lr~~id~~~~eka~l~~e~~~l~~e~~~~r~k~e~ 93 (312)
T PF00038_consen 54 EELRELRRQIDDLSKEKARLELEIDNLKEELEDLRRKYEE 93 (312)
T ss_dssp HHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHhHHhhhhHHHHhhHHhhhhhhHHHHHHHHHHHHHH
Confidence 3566777888888999999999899999999999998865
No 52
>KOG0964 consensus Structural maintenance of chromosome protein 3 (sister chromatid cohesion complex Cohesin, subunit SMC3) [Cell cycle control, cell division, chromosome partitioning]
Probab=95.90 E-value=7.9 Score=49.24 Aligned_cols=144 Identities=22% Similarity=0.297 Sum_probs=85.9
Q ss_pred hhHHHHHHHHHHHHHHHhhHhhhccCCccccCCCCCCCcccchhhhHHHHHHHHhhHHHHHHHHHHhhhhHHHHHHHHHH
Q 002212 308 EMMSQQIMVLQNKLLEALDWKLMHESDSSAVQEPGSPWRTSVNEENEFLRMQAIHNQAEMETLRKQLEFSLDEKEKLERH 387 (953)
Q Consensus 308 E~lleeIs~Lqd~Lle~ld~k~~~e~~~v~~~~~~~~~~~s~~~Ene~Lr~~~~~~~~El~~~~k~l~~clEen~kl~r~ 387 (953)
.+....|..|+++.-..+.- ++...+-+|-++=-+++| .||..+-.......+.-..+..+
T Consensus 359 ~~~~~rl~~l~~~~~~l~~K------------qgr~sqFssk~eRDkwir-------~ei~~l~~~i~~~ke~e~~lq~e 419 (1200)
T KOG0964|consen 359 KRLKKRLAKLEQKQRDLLAK------------QGRYSQFSSKEERDKWIR-------SEIEKLKRGINDTKEQENILQKE 419 (1200)
T ss_pred HHHHHHHHHHHHHHHHHHHh------------hccccccCcHHHHHHHHH-------HHHHHHHHHHhhhhhHHHHHHHH
Confidence 34444455555554444433 233334455666778888 89999999999999999999999
Q ss_pred HHHHHHHHhhccCchhhhhhhhcccccCCCccccchhhHHHHHHHHHHHHhhhhHHHhhhhhhhccccchhhHHHHHHHH
Q 002212 388 VSDLVKKLEEQTCPISAKEETQGFQLSTNVPTINFDDQVELKTMVDAIAVASQREAEAHQTAIGLSKMHDELRLELEVLN 467 (953)
Q Consensus 388 i~~L~~el~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~e~kt~v~aia~asq~~~e~~~~~i~l~k~~~~~~~~~e~~~ 467 (953)
+.++..++.+.-+.+......+ +++ +. |=-++|.+-+.+-.+
T Consensus 420 ~~~~e~~l~~~~e~i~~l~~si-------------~e~---~~----------r~~~~~~~~~~~k~~------------ 461 (1200)
T KOG0964|consen 420 IEDLESELKEKLEEIKELESSI-------------NET---KG----------RMEEFDAENTELKRE------------ 461 (1200)
T ss_pred HHHHHHHHHHHHHHHHHHHhhH-------------hhh---hh----------HHHHHHHHHHHHHHH------------
Confidence 9999888876555444444433 111 10 001112222222222
Q ss_pred hhhhhhhhccHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHhHH
Q 002212 468 KEKSEFNKLNDELQLKHKVLIEEKSNLIELYERKEMEMKREAENLELQLAEMNE 521 (953)
Q Consensus 468 ~~~~e~~~ln~e~~~~~~~l~e~~~~l~~~~~~~~~~~~~~~~~L~~ql~e~~~ 521 (953)
-+|+..+-+-||-+-+++-.+ +.-.+..|.--+++|+.+..
T Consensus 462 ---------~del~~~Rk~lWREE~~l~~~----i~~~~~dl~~~~~~L~~~~~ 502 (1200)
T KOG0964|consen 462 ---------LDELQDKRKELWREEKKLRSL----IANLEEDLSRAEKNLRATMN 502 (1200)
T ss_pred ---------HHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHhcc
Confidence 347777889999988888777 44444445555566665544
No 53
>PRK03918 chromosome segregation protein; Provisional
Probab=95.32 E-value=11 Score=46.74 Aligned_cols=34 Identities=21% Similarity=0.367 Sum_probs=23.6
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHH
Q 002212 493 NLIELYERKEMEMKREAENLELQLAEMNEENEKL 526 (953)
Q Consensus 493 ~l~~~~~~~~~~~~~~~~~L~~ql~e~~~en~kl 526 (953)
+++.-|+..+.+++.++..|..++..+..+-..+
T Consensus 452 el~~~~~~ei~~l~~~~~~l~~~~~~l~~~~~~~ 485 (880)
T PRK03918 452 ELLEEYTAELKRIEKELKEIEEKERKLRKELREL 485 (880)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4445677777777777777777777777665554
No 54
>PF07888 CALCOCO1: Calcium binding and coiled-coil domain (CALCOCO1) like; InterPro: IPR012852 Proteins found in this family are similar to the coiled-coil transcriptional coactivator protein expressed by Mus musculus (CoCoA, Q8CGU1 from SWISSPROT). This protein binds to a highly conserved N-terminal domain of p160 coactivators, such as GRIP1 (Q61026 from SWISSPROT), and thus enhances transcriptional activation by a number of nuclear receptors. CoCoA has a central coiled-coil region with three leucine zipper motifs, which is required for its interaction with GRIP1 and may regulate the autonomous transcriptional activation activity of the C-terminal region [].
Probab=94.91 E-value=5.3 Score=48.13 Aligned_cols=38 Identities=21% Similarity=0.348 Sum_probs=29.2
Q ss_pred HHHHhhhHhhhhhhhHhhhhhHHHHHHhhhhhhHHhhH
Q 002212 619 VEKAFAEVDKLSGDIVAMEDSIQAKQQQCGSLKHLCSE 656 (953)
Q Consensus 619 ~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 656 (953)
.|.--.++.+|+++++.++..+|...-+...|...+..
T Consensus 366 ~e~~k~~ie~L~~el~~~e~~lqEer~E~qkL~~ql~k 403 (546)
T PF07888_consen 366 AEADKDEIEKLSRELQMLEEHLQEERMERQKLEKQLGK 403 (546)
T ss_pred HHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444568889999999999998888888877776654
No 55
>KOG0971 consensus Microtubule-associated protein dynactin DCTN1/Glued [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton]
Probab=94.39 E-value=11 Score=47.86 Aligned_cols=165 Identities=19% Similarity=0.197 Sum_probs=81.7
Q ss_pred hhhHHHHHHHHhhHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHhhccCchhhhhhhhcccccCCCccccchhhHHHHH
Q 002212 351 EENEFLRMQAIHNQAEMETLRKQLEFSLDEKEKLERHVSDLVKKLEEQTCPISAKEETQGFQLSTNVPTINFDDQVELKT 430 (953)
Q Consensus 351 ~Ene~Lr~~~~~~~~El~~~~k~l~~clEen~kl~r~i~~L~~el~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~e~kt 430 (953)
-+++-|-.|-+..++=+=.+|.-+..---...|+..+.+....|+.+.+.-.+.+.+.+ ...++.+-+ ||.
T Consensus 368 ~qfkqlEqqN~rLKdalVrLRDlsA~ek~d~qK~~kelE~k~sE~~eL~r~kE~Lsr~~---d~aEs~iad------lkE 438 (1243)
T KOG0971|consen 368 YQFKQLEQQNARLKDALVRLRDLSASEKQDHQKLQKELEKKNSELEELRRQKERLSREL---DQAESTIAD------LKE 438 (1243)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHH---HHHHHHHHH------HHH
Confidence 34455554555555555556655555555566666666666666666666555544444 111111112 333
Q ss_pred HHHHHHHhhhhHHHhhhhhhhccccchhh---HHHHHHHHhhhhhhhhccHHHHHHHHHHHHhhh-hhhHHHHH------
Q 002212 431 MVDAIAVASQREAEAHQTAIGLSKMHDEL---RLELEVLNKEKSEFNKLNDELQLKHKVLIEEKS-NLIELYER------ 500 (953)
Q Consensus 431 ~v~aia~asq~~~e~~~~~i~l~k~~~~~---~~~~e~~~~~~~e~~~ln~e~~~~~~~l~e~~~-~l~~~~~~------ 500 (953)
=|||---|---=--+-.+.+.|+---..| --.+|.+++-..+.+.-|.|+...|+-=|+--+ |..++..|
T Consensus 439 QVDAAlGAE~MV~qLtdknlnlEekVklLeetv~dlEalee~~EQL~Esn~ele~DLreEld~~~g~~kel~~r~~aaqe 518 (1243)
T KOG0971|consen 439 QVDAALGAEEMVEQLTDKNLNLEEKVKLLEETVGDLEALEEMNEQLQESNRELELDLREELDMAKGARKELQKRVEAAQE 518 (1243)
T ss_pred HHHHhhcHHHHHHHHHhhccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHH
Confidence 35543222111111122333332211111 124556666666666666666665533333222 44444333
Q ss_pred -------HHHHHHHHHHHHHHHHHHhHHHHH
Q 002212 501 -------KEMEMKREAENLELQLAEMNEENE 524 (953)
Q Consensus 501 -------~~~~~~~~~~~L~~ql~e~~~en~ 524 (953)
-|.--++.+.+|.-|+.++..+|.
T Consensus 519 t~yDrdqTI~KfRelva~Lqdqlqe~~dq~~ 549 (1243)
T KOG0971|consen 519 TVYDRDQTIKKFRELVAHLQDQLQELTDQQE 549 (1243)
T ss_pred HHHhHHHHHHHHHHHHHHHHHHHHHHHhhhh
Confidence 345566778888888888877654
No 56
>KOG4674 consensus Uncharacterized conserved coiled-coil protein [Function unknown]
Probab=94.30 E-value=30 Score=47.05 Aligned_cols=123 Identities=20% Similarity=0.231 Sum_probs=76.0
Q ss_pred HHhhhHHHHHHHhhhhhhhHHHhhhhhhhhccchhhHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHhchhhHH
Q 002212 789 EKTKLQTELKLCRERLGVVKREFEDLTKKSWKIDSDLQTVQMEIQKSSRSVEEMELAHQAVLQEQEALLEIREKGKTEIE 868 (953)
Q Consensus 789 ~~~kl~~e~k~~~e~l~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~e~~~~~~~~~~ 868 (953)
+.++--.+|-+-||-=.+.|.|.+...-|+..+..+|..|++++-..=..+.++...++..+.+..-|-+=.+.-..--+
T Consensus 1216 ~i~~~v~~vNll~EsN~~LRee~~~~~~k~qEl~~~i~kl~~el~plq~~l~el~~e~~~~~ael~~l~~e~~~wK~R~q 1295 (1822)
T KOG4674|consen 1216 EILEKVEEVNLLRESNKVLREENEANLEKIQELRDKIEKLNFELAPLQNELKELKAELQEKVAELKKLEEENDRWKQRNQ 1295 (1822)
T ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHhhHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455667888888888888888888888888888888888888887777888888888888777444332222222223
Q ss_pred HHHHHHhhhhhhhhh--hHHHHHHHHHHHHHHHHhhHHHHHHHHHH
Q 002212 869 SMILEYMQHVFEADL--KEAEMRIVEEELQLELRRMDELRVLRAAA 912 (953)
Q Consensus 869 ~~~~~~~~~~f~~~l--~~~e~~~~~e~l~~~~~~~~~~~~~~~~~ 912 (953)
++.--|-+. =-.|+ -..+|..++++|..--+-+.|+....+.-
T Consensus 1296 ~L~~k~k~~-d~~~~~kL~~ei~~Lk~el~~ke~~~~el~~~~~~~ 1340 (1822)
T KOG4674|consen 1296 DLLEKYKDS-DKNDYEKLKSEISRLKEELEEKENLIAELKKELNRL 1340 (1822)
T ss_pred HHHHHhhcC-CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 332222211 01111 12377777777776555555555544433
No 57
>COG1196 Smc Chromosome segregation ATPases [Cell division and chromosome partitioning]
Probab=94.04 E-value=27 Score=45.50 Aligned_cols=43 Identities=14% Similarity=0.255 Sum_probs=17.1
Q ss_pred hhhhHhhhhhHHHHHHhhhhhhHHhhHHHHhHHHHHhHHHhhh
Q 002212 630 SGDIVAMEDSIQAKQQQCGSLKHLCSEMQERKALVDNKLMALK 672 (953)
Q Consensus 630 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~k~~~~~ 672 (953)
..+|...+..+...-.++.+++....+......-+......++
T Consensus 673 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 715 (1163)
T COG1196 673 EEELAELEAQLEKLEEELKSLKNELRSLEDLLEELRRQLEELE 715 (1163)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3334444333333334444444444444444444443333333
No 58
>KOG0971 consensus Microtubule-associated protein dynactin DCTN1/Glued [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton]
Probab=93.91 E-value=16 Score=46.34 Aligned_cols=159 Identities=27% Similarity=0.315 Sum_probs=100.5
Q ss_pred HHHHHHHHhhHHHHHHHHH-----------------HhhhhHHHHHHHHHHHHHHHHHHhhccCchhhhhhhhcccccCC
Q 002212 354 EFLRMQAIHNQAEMETLRK-----------------QLEFSLDEKEKLERHVSDLVKKLEEQTCPISAKEETQGFQLSTN 416 (953)
Q Consensus 354 e~Lr~~~~~~~~El~~~~k-----------------~l~~clEen~kl~r~i~~L~~el~~~~~~~~~~~~~~~~~~~~~ 416 (953)
..||.|+.....+++++|- .+..-.|=+.+++..+-+|+.+|...|....++-+.. ++.+.+
T Consensus 227 ~eLr~QvrdLtEkLetlR~kR~EDk~Kl~ElekmkiqleqlqEfkSkim~qqa~Lqrel~raR~e~keaqe~k-e~~k~e 305 (1243)
T KOG0971|consen 227 EELRAQVRDLTEKLETLRLKRAEDKAKLKELEKMKIQLEQLQEFKSKIMEQQADLQRELKRARKEAKEAQEAK-ERYKEE 305 (1243)
T ss_pred HHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHH
Confidence 3488888888888888775 5677788899999999999999999998888777766 555555
Q ss_pred CccccchhhHHHHHHHHHHHHhhhhHHHhhhhhhhcccc-chhhHHHHHHHHhhhhhh------------h---hccHHH
Q 002212 417 VPTINFDDQVELKTMVDAIAVASQREAEAHQTAIGLSKM-HDELRLELEVLNKEKSEF------------N---KLNDEL 480 (953)
Q Consensus 417 ~~~~~~~~q~e~kt~v~aia~asq~~~e~~~~~i~l~k~-~~~~~~~~e~~~~~~~e~------------~---~ln~e~ 480 (953)
|. ++-+-+|+-|+-...|- .++|--+--++..|+ .|+|.+.|||++.+|.+. - --|+.|
T Consensus 306 ma--d~ad~iEmaTldKEmAE---ERaesLQ~eve~lkEr~deletdlEILKaEmeekG~~~~~~ss~qfkqlEqqN~rL 380 (1243)
T KOG0971|consen 306 MA--DTADAIEMATLDKEMAE---ERAESLQQEVEALKERVDELETDLEILKAEMEEKGSDGQAASSYQFKQLEQQNARL 380 (1243)
T ss_pred HH--HHHHHHHHHHhhHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCcccchHHHHHHHHHHHHH
Confidence 43 44566676665554442 233333333334443 378889999999888652 1 225566
Q ss_pred HHHHHHHHH---hhh----hhhHHHHH---HHHHHHHHHHHHHHHHHH
Q 002212 481 QLKHKVLIE---EKS----NLIELYER---KEMEMKREAENLELQLAE 518 (953)
Q Consensus 481 ~~~~~~l~e---~~~----~l~~~~~~---~~~~~~~~~~~L~~ql~e 518 (953)
++.|=.|.. +-+ ++.+..|+ .+++++++-+.|..+++.
T Consensus 381 KdalVrLRDlsA~ek~d~qK~~kelE~k~sE~~eL~r~kE~Lsr~~d~ 428 (1243)
T KOG0971|consen 381 KDALVRLRDLSASEKQDHQKLQKELEKKNSELEELRRQKERLSRELDQ 428 (1243)
T ss_pred HHHHHHHHhcchHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHH
Confidence 666633332 111 55555555 334444444444444443
No 59
>KOG4643 consensus Uncharacterized coiled-coil protein [Function unknown]
Probab=93.60 E-value=30 Score=44.57 Aligned_cols=44 Identities=27% Similarity=0.268 Sum_probs=31.6
Q ss_pred HHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhhhhccccchhhh
Q 002212 888 MRIVEEELQLELRRMDELRVLRAAAAEKKAQLLEHTKSKSCLFS 931 (953)
Q Consensus 888 ~~~~~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 931 (953)
.....-++..++|++-+-+...+.....+.+.+...++|+.+++
T Consensus 828 l~a~~rels~elr~a~~rq~~~~~ri~eL~qq~~qk~~~s~~ls 871 (1195)
T KOG4643|consen 828 LVATRRELSLELRRALDRQHNKNNRIDELKQQLNQKISESNKLS 871 (1195)
T ss_pred HHHhhhhhhhHHHHHHHhhccccccccHHHHHhhhhhccccCcc
Confidence 55667788888888888887777777777777777766664443
No 60
>KOG0996 consensus Structural maintenance of chromosome protein 4 (chromosome condensation complex Condensin, subunit C) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=93.57 E-value=32 Score=44.89 Aligned_cols=202 Identities=22% Similarity=0.227 Sum_probs=98.8
Q ss_pred HHHHHHHHHHHHHHHHhHHHHHHHhhHHHHHhhhHHHHHHHHhhhcCCccccccccccccchhhccccccccccchhhhc
Q 002212 503 MEMKREAENLELQLAEMNEENEKLLGLYEKAMQERDEFKRMISLCGQNRAEASGEIYCPEKLVEIDGEAAFADMETEQLN 582 (953)
Q Consensus 503 ~~~~~~~~~L~~ql~e~~~en~kl~~lye~am~e~d~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 582 (953)
...+...++++.+--.+.+.=.-+..=-+|++.++++-+|..+.-..- |+ ++.-..+-|+
T Consensus 387 ~~~k~~~~~~e~~~vk~~E~lK~~~~k~kKleke~ek~~~~~~e~e~~----------pe----------~~~~~i~~~~ 446 (1293)
T KOG0996|consen 387 ESLKKKFQDLEREDVKREEKLKRLTSKIKKLEKEIEKARRKKSELEKA----------PE----------KARIEIQKCQ 446 (1293)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHhC----------ch----------hhHhHHHHHH
Confidence 344445555555555555444444445566666666666666553332 21 2333344466
Q ss_pred hhhhhhhhhHHHHHHHHHHHHHHhhhhhhhhhhhhhHHHHhhhHhhhhhhhHhhhhhHHHHHHhhhhhhHHhhHHHHhHH
Q 002212 583 LANIKVTEDLNLVRLKLEKAQEKLSDSANTITLFGSVEKAFAEVDKLSGDIVAMEDSIQAKQQQCGSLKHLCSEMQERKA 662 (953)
Q Consensus 583 ~~~~~~~~~l~~~~~k~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 662 (953)
.-+..+.+.++-.+.+|+..++++-.- |-++-.-.++---....++.++..+...+++-+.++.-|...- +
T Consensus 447 ~ei~~L~~~~~~~~~~l~e~~~~l~~~--t~~~~~e~~~~ekel~~~~~~~n~~~~e~~vaesel~~L~~~~-------~ 517 (1293)
T KOG0996|consen 447 TEIEQLEELLEKEERELDEILDSLKQE--TEGIREEIEKLEKELMPLLKQVNEARSELDVAESELDILLSRH-------E 517 (1293)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhh--hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------H
Confidence 677788888888888888887777543 3222222222222223334444555555555555555555444 4
Q ss_pred HHHhHHHhhhhhcccccchhhHHHHHHHhhhhccccchhhhhhhHhhhHhHhHhhHHHHHHhhhhhhhHHHHHHhHHHHH
Q 002212 663 LVDNKLMALKYSLSSFSSSAAYFEQRAARSRARVTTSSTYLNQKKEQLVHLECCKREIEDALGKVQRSEAELRNNLALLK 742 (953)
Q Consensus 663 ~~~~k~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~l~~l~~~k~~~~~~~~~~~~~e~e~~~~~~~~k 742 (953)
-+-+|+--|+=+|.. ++.+|=+- .+.+++. |+.|..+..-..+++.-+.+....+..++.++..+.
T Consensus 518 ~~~~~~e~lk~~L~~--~~~~~~e~-----~~~l~~~-------k~~l~~~k~e~~~~~k~l~~~~~e~~~~~~~~~~~r 583 (1293)
T KOG0996|consen 518 TGLKKVEELKGKLLA--SSESLKEK-----KTELDDL-------KEELPSLKQELKEKEKELPKLRKEERNLKSQLNKLR 583 (1293)
T ss_pred HHHHHHHHHHHHHHH--HHHHHHHH-----HHHHHHH-------HHhhhhHHHHHHHHHHhHHHHHHHHHHHHHHHHHHH
Confidence 444444444444432 23332222 2233333 333333333334444445555555554444444444
Q ss_pred hHhHH
Q 002212 743 SKLEE 747 (953)
Q Consensus 743 ~k~~~ 747 (953)
.+++|
T Consensus 584 qrveE 588 (1293)
T KOG0996|consen 584 QRVEE 588 (1293)
T ss_pred HHHHH
Confidence 44443
No 61
>KOG0977 consensus Nuclear envelope protein lamin, intermediate filament superfamily [Cell cycle control, cell division, chromosome partitioning; Nuclear structure]
Probab=93.41 E-value=12 Score=45.16 Aligned_cols=43 Identities=30% Similarity=0.388 Sum_probs=39.2
Q ss_pred hHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHhhccCchhhh
Q 002212 363 NQAEMETLRKQLEFSLDEKEKLERHVSDLVKKLEEQTCPISAK 405 (953)
Q Consensus 363 ~~~El~~~~k~l~~clEen~kl~r~i~~L~~el~~~~~~~~~~ 405 (953)
...|+.++++-+....-+.++++.+|+.|..++.+++.....+
T Consensus 90 ye~El~~ar~~l~e~~~~ra~~e~ei~kl~~e~~elr~~~~~~ 132 (546)
T KOG0977|consen 90 YEAELATARKLLDETARERAKLEIEITKLREELKELRKKLEKA 132 (546)
T ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHH
Confidence 4589999999999999999999999999999999999888655
No 62
>PRK04778 septation ring formation regulator EzrA; Provisional
Probab=93.38 E-value=23 Score=42.62 Aligned_cols=152 Identities=19% Similarity=0.204 Sum_probs=100.5
Q ss_pred HHHHHHHHHHHhhhhhhhhhhhhhHHHHhhhHhhhhhhhHhhhhhHHHHHHhhhhhhHHhhHHHHhHHHHHhHHHhhhhh
Q 002212 595 VRLKLEKAQEKLSDSANTITLFGSVEKAFAEVDKLSGDIVAMEDSIQAKQQQCGSLKHLCSEMQERKALVDNKLMALKYS 674 (953)
Q Consensus 595 ~~~k~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~k~~~~~~~ 674 (953)
+...+-.+++.|-++-..+.-|... +|--.++.+...|..++.+++.-+..+.-|...=.+-...-.-+..+|..+|=.
T Consensus 77 ~~~~~~~ie~~l~~ae~~~~~~~f~-~a~~~~~~~~~~l~~~e~~~~~i~~~l~~l~~~e~~nr~~v~~l~~~y~~~rk~ 155 (569)
T PRK04778 77 VTNSLPDIEEQLFEAEELNDKFRFR-KAKHEINEIESLLDLIEEDIEQILEELQELLESEEKNREEVEQLKDLYRELRKS 155 (569)
T ss_pred HHhhhhhHHHHHHHHHHHHhcccHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4556777777777777666666543 455666777777777777777777777777655444444445555566555554
Q ss_pred cc----cccchhhHHHHHHHhhhhccccchhhh-----hhhHhhhHhHhHhhHHHHHHhhhh----hhhHHHHHHhHHHH
Q 002212 675 LS----SFSSSAAYFEQRAARSRARVTTSSTYL-----NQKKEQLVHLECCKREIEDALGKV----QRSEAELRNNLALL 741 (953)
Q Consensus 675 ~~----~f~~~~~~~~~~~~~~~~~~~~~~~~~-----~~k~~~l~~l~~~k~~~~~~~~~~----~~~e~e~~~~~~~~ 741 (953)
|. +|.|+...++.+=+.....|+.+.++. .+-++.|..|+..=..++..+.++ .....++-..++.|
T Consensus 156 ll~~~~~~G~a~~~le~~l~~~e~~f~~f~~l~~~Gd~~~A~e~l~~l~~~~~~l~~~~~~iP~l~~~~~~~~P~ql~el 235 (569)
T PRK04778 156 LLANRFSFGPALDELEKQLENLEEEFSQFVELTESGDYVEAREILDQLEEELAALEQIMEEIPELLKELQTELPDQLQEL 235 (569)
T ss_pred HHhcCccccchHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHH
Confidence 42 589999999999666666665544433 245566666666666666666666 55666777777888
Q ss_pred HhHhHH
Q 002212 742 KSKLEE 747 (953)
Q Consensus 742 k~k~~~ 747 (953)
+.-+++
T Consensus 236 ~~gy~~ 241 (569)
T PRK04778 236 KAGYRE 241 (569)
T ss_pred HHHHHH
Confidence 877766
No 63
>KOG4673 consensus Transcription factor TMF, TATA element modulatory factor [Transcription]
Probab=93.32 E-value=27 Score=43.32 Aligned_cols=345 Identities=20% Similarity=0.226 Sum_probs=173.0
Q ss_pred HHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHhhHhhhccCCccccCCCCCCCccc-chhhhHHHHHHHHhhHHHH
Q 002212 289 KEKEECLKEIESFYEGGEREMMSQQIMVLQNKLLEALDWKLMHESDSSAVQEPGSPWRTS-VNEENEFLRMQAIHNQAEM 367 (953)
Q Consensus 289 ~Ene~L~eEIq~LqeegERE~lleeIs~Lqd~Lle~ld~k~~~e~~~v~~~~~~~~~~~s-~~~Ene~Lr~~~~~~~~El 367 (953)
++...|-+-++.+ -.||..+--++..|.+.|...|....-.|.+-+ ++ +-.|.+.|--+..++..=|
T Consensus 409 QRva~lEkKvqa~--~kERDalr~e~kslk~ela~~l~~DeLaEkdE~----------I~~lm~EGEkLSK~ql~qs~iI 476 (961)
T KOG4673|consen 409 QRVATLEKKVQAL--TKERDALRREQKSLKKELAAALLKDELAEKDEI----------INQLMAEGEKLSKKQLAQSAII 476 (961)
T ss_pred HHHHHHHHHHHHH--HHhHHHHHHHHHHHHHHHHHhhhhHHHHHHHHH----------HHHHHHHHHHhHHHHHHHHHHH
Confidence 3444444444443 357888888888888888776655322222222 23 5578888887777777777
Q ss_pred HHHHHHhhhhHHHHHHHHHHHHHHHHHHhhccCchhhhhhhhcccccCCCccccchhhHHHHHHHH------HHHHhhhh
Q 002212 368 ETLRKQLEFSLDEKEKLERHVSDLVKKLEEQTCPISAKEETQGFQLSTNVPTINFDDQVELKTMVD------AIAVASQR 441 (953)
Q Consensus 368 ~~~~k~l~~clEen~kl~r~i~~L~~el~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~e~kt~v~------aia~asq~ 441 (953)
..+|-+.--.----+|+...|..|+.+++..++-+.-.++.. -.+.-.+.+ -|-+++.--| +.+.+-+.
T Consensus 477 kKLRAk~ke~etl~~K~ge~i~~L~sE~~~lk~il~~Kee~E-k~~~E~I~k----~~ae~~rq~~~~~~sr~~~~~le~ 551 (961)
T KOG4673|consen 477 KKLRAKIKEAETLEEKKGELITKLQSEENKLKSILRDKEETE-KLLQETIEK----HQAELTRQKDYYSNSRALAAALEA 551 (961)
T ss_pred HHHHHHhhhhhHHHHHhhhHHHHHHHHHHHHHHHhhhHHHHH-HHHHHHHHH----HHHHHHHHHHhhhhHHHHHHHHHH
Confidence 777766554433445677778888888888777665444333 000000000 0111111111 22222233
Q ss_pred HHHhhhhhhhccccchhhHHHHHHHHhhhhhhhhccHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHH----
Q 002212 442 EAEAHQTAIGLSKMHDELRLELEVLNKEKSEFNKLNDELQLKHKVLIEEKSNLIELYERKEMEMKREAENLELQLA---- 517 (953)
Q Consensus 442 ~~e~~~~~i~l~k~~~~~~~~~e~~~~~~~e~~~ln~e~~~~~~~l~e~~~~l~~~~~~~~~~~~~~~~~L~~ql~---- 517 (953)
.+-+-+-+..-.++ +|..+++.+-.-+.+.+ +.|-+.+.+++..+.--++|+.
T Consensus 552 ~~~a~qat~d~a~~-------------------Dlqk~nrlkQdear~~~----~~lvqqv~dLR~~L~~~Eq~aarrEd 608 (961)
T KOG4673|consen 552 QALAEQATNDEARS-------------------DLQKENRLKQDEARERE----SMLVQQVEDLRQTLSKKEQQAARRED 608 (961)
T ss_pred HHHHHHHhhhhhhh-------------------hHHHHhhhhhhHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33222222222222 22223333322333333 3344557777777777777664
Q ss_pred HhHHHHHHHhhHHHHHhhhHHHHHHHHhhhcCCccccccccccccchhhccccccccccchhhhchhhhhhhhhH---HH
Q 002212 518 EMNEENEKLLGLYEKAMQERDEFKRMISLCGQNRAEASGEIYCPEKLVEIDGEAAFADMETEQLNLANIKVTEDL---NL 594 (953)
Q Consensus 518 e~~~en~kl~~lye~am~e~d~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l---~~ 594 (953)
-|.+||+.||.=|+-|=.--.++-.-+. .|+. |+=--+..+-+-| -.
T Consensus 609 ~~R~Ei~~LqrRlqaaE~R~eel~q~v~-------~TTr-----------------------PLlRQIE~lQ~tl~~~~t 658 (961)
T KOG4673|consen 609 MFRGEIEDLQRRLQAAERRCEELIQQVP-------ETTR-----------------------PLLRQIEALQETLSKAAT 658 (961)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhcc-------cccc-----------------------HHHHHHHHHHHHHhhhhh
Confidence 4678899998777766322222211110 1111 1000011111111 12
Q ss_pred HHHHHH-HHHHHhhhhhhhhhhhhhHHHHhhhHhhhhhhhHhhhhhHHHHHHhhhhhhHHhhHHHHhHHHHHhHHHhhhh
Q 002212 595 VRLKLE-KAQEKLSDSANTITLFGSVEKAFAEVDKLSGDIVAMEDSIQAKQQQCGSLKHLCSEMQERKALVDNKLMALKY 673 (953)
Q Consensus 595 ~~~k~~-~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~k~~~~~~ 673 (953)
+|.++| .+-+||++++--+...-..| ...-.-+-+++|
T Consensus 659 awereE~~l~~rL~dSQtllr~~v~~e-----------------------------------------qgekqElL~~~~ 697 (961)
T KOG4673|consen 659 AWEREERSLNERLSDSQTLLRINVLEE-----------------------------------------QGEKQELLSLNF 697 (961)
T ss_pred HHHHHHHHHHHhhhhHHHHHHHHHHHH-----------------------------------------hhhHHHHHHHhc
Confidence 333332 23444444432222211111 111122457889
Q ss_pred hcccccchhhHHHHHHHhhhhccccchhhhhhhHhhhHhHhHhhHHHHHHhhhhhhhHHHHHHhHHHHHhHhHH
Q 002212 674 SLSSFSSSAAYFEQRAARSRARVTTSSTYLNQKKEQLVHLECCKREIEDALGKVQRSEAELRNNLALLKSKLEE 747 (953)
Q Consensus 674 ~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~l~~l~~~k~~~~~~~~~~~~~e~e~~~~~~~~k~k~~~ 747 (953)
+|++--..-++..+-.++-++..----.-.+..+.|+..+ +.|++.-.+++-+.|.++|.--..+++.+..
T Consensus 698 ~l~s~~~q~sllraE~~~l~~~le~e~nr~~~~~~e~~~~---qeE~~~l~~r~~~le~e~r~~k~~~~q~lq~ 768 (961)
T KOG4673|consen 698 SLPSSPIQLSLLRAEQGQLSKSLEKERNRAAENRQEYLAA---QEEADTLEGRANQLEVEIRELKRKHKQELQE 768 (961)
T ss_pred CCCcchhHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhH
Confidence 9999888888877665543333333333344555555544 5688888899999999988766666555543
No 64
>PF07888 CALCOCO1: Calcium binding and coiled-coil domain (CALCOCO1) like; InterPro: IPR012852 Proteins found in this family are similar to the coiled-coil transcriptional coactivator protein expressed by Mus musculus (CoCoA, Q8CGU1 from SWISSPROT). This protein binds to a highly conserved N-terminal domain of p160 coactivators, such as GRIP1 (Q61026 from SWISSPROT), and thus enhances transcriptional activation by a number of nuclear receptors. CoCoA has a central coiled-coil region with three leucine zipper motifs, which is required for its interaction with GRIP1 and may regulate the autonomous transcriptional activation activity of the C-terminal region [].
Probab=93.22 E-value=25 Score=42.64 Aligned_cols=41 Identities=27% Similarity=0.213 Sum_probs=24.0
Q ss_pred hhhHHHHHHhhhhhhHHhhHHHHhHHHHHhHHHhhhhhccc
Q 002212 637 EDSIQAKQQQCGSLKHLCSEMQERKALVDNKLMALKYSLSS 677 (953)
Q Consensus 637 ~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~k~~~~~~~~~~ 677 (953)
....+..+.+...|+..+..++++-.+...+-..|+=-||+
T Consensus 275 ~~~~~~~~~e~e~LkeqLr~~qe~lqaSqq~~~~L~~EL~~ 315 (546)
T PF07888_consen 275 ETQAQQLQQENEALKEQLRSAQEQLQASQQEAELLRKELSD 315 (546)
T ss_pred hhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33445556666666666666666666666665555554443
No 65
>KOG0977 consensus Nuclear envelope protein lamin, intermediate filament superfamily [Cell cycle control, cell division, chromosome partitioning; Nuclear structure]
Probab=92.74 E-value=4 Score=49.06 Aligned_cols=280 Identities=18% Similarity=0.216 Sum_probs=148.7
Q ss_pred hhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHhhcCCCchhhhHH-HHHHHHHHHHHHHhhhh
Q 002212 227 REKEKDISLQALAAENQAALRLAKQREDEIQGLKMRLRFREAGIKRLEAVASGKISAETHLL-KEKEECLKEIESFYEGG 305 (953)
Q Consensus 227 rekEke~~LkkL~aEle~~~~Lv~qREeeiqs~KM~LRfREdkI~rLE~l~~g~~sae~~Ll-~Ene~L~eEIq~Lqeeg 305 (953)
++.||+ .|+.|-..+..+..-|+..+.+-..+. -.|.-|+..+.+..+.-...- .|...+...|.. -..
T Consensus 37 R~rEK~-El~~LNDRLA~YIekVR~LEaqN~~L~-------~di~~lr~~~~~~ts~ik~~ye~El~~ar~~l~e--~~~ 106 (546)
T KOG0977|consen 37 REREKK-ELQELNDRLAVYIEKVRFLEAQNRKLE-------HDINLLRGVVGRETSGIKAKYEAELATARKLLDE--TAR 106 (546)
T ss_pred HHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHhhccCCCcchhHHhhhhHHHHHHHHHH--HHH
Confidence 344443 456666666666666666554433332 233444444433322211111 222222222221 233
Q ss_pred hhhhHHHHHHHHHHHHHHHhhHhhhccCCccccCCCCCCCcccchhhhHHHHHHHHhhHHHHHHHHHHhhhhHHHHHHHH
Q 002212 306 EREMMSQQIMVLQNKLLEALDWKLMHESDSSAVQEPGSPWRTSVNEENEFLRMQAIHNQAEMETLRKQLEFSLDEKEKLE 385 (953)
Q Consensus 306 ERE~lleeIs~Lqd~Lle~ld~k~~~e~~~v~~~~~~~~~~~s~~~Ene~Lr~~~~~~~~El~~~~k~l~~clEen~kl~ 385 (953)
+|..+.-+|..|++.+.+........+....... +.-....--+.+.++|++.+...-..|.++...|-
T Consensus 107 ~ra~~e~ei~kl~~e~~elr~~~~~~~k~~~~~r-----------e~~~~~~~~l~~leAe~~~~krr~~~le~e~~~Lk 175 (546)
T KOG0977|consen 107 ERAKLEIEITKLREELKELRKKLEKAEKERRGAR-----------EKLDDYLSRLSELEAEINTLKRRIKALEDELKRLK 175 (546)
T ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhhhH-----------HHHHHHhhhhhhhhhHHHHHHHHHHHHHHHHHHHH
Confidence 6777777777777776543322211111110000 00011112345677889999999999999999999
Q ss_pred HHHHHHHHHHhhccCchhhhhhhhcccccCCCccccchhhHHHHHHHHHHHHhh-hhHHHhhhhhhhccccc-hhhHHHH
Q 002212 386 RHVSDLVKKLEEQTCPISAKEETQGFQLSTNVPTINFDDQVELKTMVDAIAVAS-QREAEAHQTAIGLSKMH-DELRLEL 463 (953)
Q Consensus 386 r~i~~L~~el~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~e~kt~v~aia~as-q~~~e~~~~~i~l~k~~-~~~~~~~ 463 (953)
+++..|..+|...|+.+...-.. .++.|-.++++..-|+..- +|+-|+.+.......+- ...|-|+
T Consensus 176 ~en~rl~~~l~~~r~~ld~Etll------------r~d~~n~~q~Lleel~f~~~~h~~eI~e~~~~~~rd~t~~~r~~F 243 (546)
T KOG0977|consen 176 AENSRLREELARARKQLDDETLL------------RVDLQNRVQTLLEELAFLKRIHKQEIEEERRKARRDTTADNREYF 243 (546)
T ss_pred HHhhhhHHHHHHHHHHHHHHHHH------------HHHHHhHHHHHHHHHHHHHhccHHHHHHHHHHHhhcccccchHHH
Confidence 99999999998888776543222 3557777888888887764 67788888777666662 1222222
Q ss_pred HHHHhhhhhhhhccHHHHHHHHHHHHhhh-hhhHHHHHHHHHHH-----------------------------------H
Q 002212 464 EVLNKEKSEFNKLNDELQLKHKVLIEEKS-NLIELYERKEMEMK-----------------------------------R 507 (953)
Q Consensus 464 e~~~~~~~e~~~ln~e~~~~~~~l~e~~~-~l~~~~~~~~~~~~-----------------------------------~ 507 (953)
++|.+.-=+|++..++.-..-++ -+-..|+.+|++.+ .
T Consensus 244 ------~~eL~~Ai~eiRaqye~~~~~nR~diE~~Y~~kI~~i~~~~~~~~~~~~~~rEEl~~~R~~i~~Lr~klselE~ 317 (546)
T KOG0977|consen 244 ------KNELALAIREIRAQYEAISRQNRKDIESWYKRKIQEIRTSAERANVEQNYAREELRRIRSRISGLRAKLSELES 317 (546)
T ss_pred ------HHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhhhccccchhHHHHHHHHHHHhcccchhhhhccccc
Confidence 22222223344444433333333 23334555543333 2
Q ss_pred HHHHHHHHHHHhHHHHHHHhhHHHHHhhhHHHHHHHHh
Q 002212 508 EAENLELQLAEMNEENEKLLGLYEKAMQERDEFKRMIS 545 (953)
Q Consensus 508 ~~~~L~~ql~e~~~en~kl~~lye~am~e~d~~~r~~~ 545 (953)
+-.-|+.++.+++-.=+.-+..||.+..+||--=+.|-
T Consensus 318 ~n~~L~~~I~dL~~ql~e~~r~~e~~L~~kd~~i~~mR 355 (546)
T KOG0977|consen 318 RNSALEKRIEDLEYQLDEDQRSFEQALNDKDAEIAKMR 355 (546)
T ss_pred cChhHHHHHHHHHhhhhhhhhhhhhhhhhHHHHHHHHH
Confidence 22334455555555555567788888888876555553
No 66
>PRK11637 AmiB activator; Provisional
Probab=92.70 E-value=15 Score=42.28 Aligned_cols=47 Identities=9% Similarity=0.122 Sum_probs=32.7
Q ss_pred HHHHHhhHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHhhccCchh
Q 002212 357 RMQAIHNQAEMETLRKQLEFSLDEKEKLERHVSDLVKKLEEQTCPIS 403 (953)
Q Consensus 357 r~~~~~~~~El~~~~k~l~~clEen~kl~r~i~~L~~el~~~~~~~~ 403 (953)
.-++..+..+|+.+...+.....+...++.+|..++.++...+..+.
T Consensus 81 ~~qi~~~~~~i~~~~~~i~~~~~ei~~l~~eI~~~q~~l~~~~~~l~ 127 (428)
T PRK11637 81 EEAISQASRKLRETQNTLNQLNKQIDELNASIAKLEQQQAAQERLLA 127 (428)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33455556677777777777777777777777777777777766664
No 67
>KOG0978 consensus E3 ubiquitin ligase involved in syntaxin degradation [Posttranslational modification, protein turnover, chaperones]
Probab=92.34 E-value=37 Score=42.34 Aligned_cols=453 Identities=19% Similarity=0.179 Sum_probs=218.3
Q ss_pred HHHHHHHHHHHHHhhHhhhccCCccccCCCCCCCcccchhhhHHHHHHHHhhHHHHHHHHHHhhhhHHHHHHHHHHHHHH
Q 002212 312 QQIMVLQNKLLEALDWKLMHESDSSAVQEPGSPWRTSVNEENEFLRMQAIHNQAEMETLRKQLEFSLDEKEKLERHVSDL 391 (953)
Q Consensus 312 eeIs~Lqd~Lle~ld~k~~~e~~~v~~~~~~~~~~~s~~~Ene~Lr~~~~~~~~El~~~~k~l~~clEen~kl~r~i~~L 391 (953)
+.|..+.+.|.-.+.....+.+-+-.+|...++..+--.-+++-+|-.+..+...-++.-.++..-......+.|++..+
T Consensus 107 eki~~~~~~l~~~la~~~~~~~t~~~~~~~~~~~~t~~~t~~~~l~~~iee~~~~~~~~~~ele~lq~~~~~~~~~~~~~ 186 (698)
T KOG0978|consen 107 EKIRRRSNKLNKHLAEALEHLNTYGNGNGSLSGTITVNSTELEELRDEIEELRELASTRMEELEKLQLYSDEILRQLDRF 186 (698)
T ss_pred HHHHHHHHHHHHHHHHHhccCCCCCCcccccCcccccchhhhhhhccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45666777776666666665544332233344443334567778886666665556666667777777888888888888
Q ss_pred HHHHhhccCchh-hhhhhhcccccCCCccccchhhHHHHHH-HHHHHHhhhhHHHhhhhhhhccccchhhHHHHHHHHhh
Q 002212 392 VKKLEEQTCPIS-AKEETQGFQLSTNVPTINFDDQVELKTM-VDAIAVASQREAEAHQTAIGLSKMHDELRLELEVLNKE 469 (953)
Q Consensus 392 ~~el~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~q~e~kt~-v~aia~asq~~~e~~~~~i~l~k~~~~~~~~~e~~~~~ 469 (953)
...+.......+ .+.... -+.++.=+.++|| +|.|+. +-.-.-.-.+-...-++.+.++..+|-. +-
T Consensus 187 ~~~l~~~~~~~~~~~~e~~---------~~~~NE~l~~~~~~~~e~~~-~~~~~~lee~~~~~~~e~~~l~~~~e~~-~~ 255 (698)
T KOG0978|consen 187 RVELRSLKEKVRSETFELR---------CLQYNEELQRKTMESDEAIN-SKKVIKLEEKLAQCVKEYEMLRKEFENN-KS 255 (698)
T ss_pred HHHHHHhhHHHHHHHHHHH---------HHHhhhhcccccchhhhhhc-cchHHHHHHHHHHHHHHHHHHHHhHHHh-HH
Confidence 888855544442 111100 0001111222221 111111 1111111122222223333333333321 11
Q ss_pred hhh-hhhccHHHHHHHHHHHHhhhhhhHHHHHHH-------------------------HHHHHHHHHHHHHHHHhHHHH
Q 002212 470 KSE-FNKLNDELQLKHKVLIEEKSNLIELYERKE-------------------------MEMKREAENLELQLAEMNEEN 523 (953)
Q Consensus 470 ~~e-~~~ln~e~~~~~~~l~e~~~~l~~~~~~~~-------------------------~~~~~~~~~L~~ql~e~~~en 523 (953)
+++ |..+|.+++.=.-.|=+.+ +...-|.++- -+.+.-..+-+++.++|.+-+
T Consensus 256 ~~~~~~~in~e~~~L~Ssl~e~~-~~l~~~~~~~k~t~~~~~~lr~~~~s~~~~~~~~~~~~e~l~~~~~~~~~~~~~~~ 334 (698)
T KOG0978|consen 256 QNDLFSSINREMRHLISSLQEHE-KLLKEYERELKDTESDNLKLRKQHSSAADSLESKSRDLESLLDKIQDLISQEAELS 334 (698)
T ss_pred hhhhhhhHHHHHHHHHHHHHHHH-HHHHHHHHHHhcccchHHHHHHHHHHHHhhccchhHHHHHHHHHHHHHHHHHHHHH
Confidence 222 3444443332211111111 2222233322 222223333444445555555
Q ss_pred HHHhhHHHHHhhhHHHHHHHHhhhcCCccccccccccccchhhccccccccccch--hh-hchhhhhhhhhHH----HHH
Q 002212 524 EKLLGLYEKAMQERDEFKRMISLCGQNRAEASGEIYCPEKLVEIDGEAAFADMET--EQ-LNLANIKVTEDLN----LVR 596 (953)
Q Consensus 524 ~kl~~lye~am~e~d~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~-~~~~~~~~~~~l~----~~~ 596 (953)
.++-|....+-++..-+=|.....+++ +-|+....+..-. .. .+.-.-..++..+ .++
T Consensus 335 ~~~~~~~~~~~~~~~~~~~~~~~e~~k---------------~~di~~~k~el~~~~~~~le~~k~~~ke~~~~~~~ka~ 399 (698)
T KOG0978|consen 335 KKLRSKLLESAKKLKILLREKDRESQK---------------ERDILVAKSELLKTNELRLEMLKSLLKEQRDKLQVKAR 399 (698)
T ss_pred HHHHHHHHHHHHHHHhHHHHHHHHhhh---------------hHhHHHHHHHHHHHHHHHHHHHhCCCHHHHhHHHHHHH
Confidence 566666666666666666655444443 1122211111100 00 0001111112222 111
Q ss_pred HHHHHHHHHhhhhhhhh------hhhhhHHHHhhhHhhhhhhhHhhhhhHHHHHHhhhhhhHHhhHHHHhHH-H------
Q 002212 597 LKLEKAQEKLSDSANTI------TLFGSVEKAFAEVDKLSGDIVAMEDSIQAKQQQCGSLKHLCSEMQERKA-L------ 663 (953)
Q Consensus 597 ~k~~~~~~~~~~~~~~~------~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~-~------ 663 (953)
..++-+-.++-.+.+.. ......+.-+-++++++.+|+..+....+---++.+..+.+..+|++-. +
T Consensus 400 ~E~e~l~q~l~~~~k~e~~e~~k~~~d~~~r~~~~~~~~~e~Lqk~~~~~k~ll~e~~t~gsA~ed~Qeqn~kL~~el~e 479 (698)
T KOG0978|consen 400 AETESLLQRLKALDKEERSEIRKQALDDAERQIRQVEELSEELQKKEKNFKCLLSEMETIGSAFEDMQEQNQKLLQELRE 479 (698)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 22222222222221111 1233444445577888888888888888778888888888888887743 1
Q ss_pred HHhHHHhhhhhcccccchhhHHHHHHH---------hhhhccccchhhhhhhHhhhHhHhHhhHHHHHHhhhhhhhHHHH
Q 002212 664 VDNKLMALKYSLSSFSSSAAYFEQRAA---------RSRARVTTSSTYLNQKKEQLVHLECCKREIEDALGKVQRSEAEL 734 (953)
Q Consensus 664 ~~~k~~~~~~~~~~f~~~~~~~~~~~~---------~~~~~~~~~~~~~~~k~~~l~~l~~~k~~~~~~~~~~~~~e~e~ 734 (953)
-|+|.=+|=+ +....-.-|+..|+. ...+.++...-++.+-.+++..|+..-..+.+-.+..+++=..+
T Consensus 480 kdd~nfklm~--e~~~~~q~~k~L~~ek~~l~~~i~~l~~~~~~~~~~i~~leeq~~~lt~~~~~l~~el~~~~~~le~~ 557 (698)
T KOG0978|consen 480 KDDKNFKLMS--ERIKANQKHKLLREEKSKLEEQILTLKASVDKLELKIGKLEEQERGLTSNESKLIKELTTLTQSLEML 557 (698)
T ss_pred HHhHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHhhhhhHHHHHHHHHHHHHH
Confidence 2333322211 222344556666643 23444555555555555555555555555555555544444444
Q ss_pred HHhHHHHHhHhHHHhhhcccceeeEeeccccccCCcccccccccchhhhhccHHHHhhhHHHHHHHhhhhhhhHHHhhhh
Q 002212 735 RNNLALLKSKLEEENRRQENEKVLFAIDNIEKVDHPQRNWNLGGKATELLKSEEEKTKLQTELKLCRERLGVVKREFEDL 814 (953)
Q Consensus 735 ~~~~~~~k~k~~~e~~~~e~e~vl~~idn~~~~~~~~~~~~~~gka~~llk~ee~~~kl~~e~k~~~e~l~~~~~e~~~~ 814 (953)
+++++.++-.+ +-| ..+.++..+.|...+++++-...|++.+
T Consensus 558 kk~~~e~~~~~------------------------------------~~L--q~~~ek~~~~le~i~~~~~e~~~ele~~ 599 (698)
T KOG0978|consen 558 KKKAQEAKQSL------------------------------------EDL--QIELEKSEAKLEQIQEQYAELELELEIE 599 (698)
T ss_pred HHHHHHHHHHH------------------------------------HHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44443333222 222 3456778889999999999999999999
Q ss_pred hhhhccchhhHHHHHHH
Q 002212 815 TKKSWKIDSDLQTVQME 831 (953)
Q Consensus 815 ~~~~~~~~~~~~~~~~~ 831 (953)
..|--.++.++..+.-.
T Consensus 600 ~~k~~rleEE~e~L~~k 616 (698)
T KOG0978|consen 600 KFKRKRLEEELERLKRK 616 (698)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 88777777666555443
No 68
>COG5059 KIP1 Kinesin-like protein [Cytoskeleton]
Probab=92.20 E-value=0.027 Score=66.96 Aligned_cols=68 Identities=50% Similarity=0.576 Sum_probs=56.1
Q ss_pred CCCCCCccceeEEEEEEEeecCCCcceeeeeeEEEEecCCCCCcCCCCcchhhhhHhhhhhhchhHHHHHHHHH
Q 002212 1 MNRASSRSHSVFTCIIESKWESQGVTHHRFARLNLVDLAGSERQKSSGAEGERLKEATNINKSLSTLGLVIMNL 74 (953)
Q Consensus 1 MN~~SSRSHAIFTI~Ieqk~~~~g~~~~r~SKL~LVDLAGSER~~kTgAeGeRLKEA~nINKSLsALG~VI~AL 74 (953)
+|..++|+|++|+.+........+.. . ++.|||||+||. .+...|.++++..++|++|..+|.+|.++
T Consensus 498 ~n~~~~~~~~~~~~~~~~~~~~~~~~----~-~n~~~~~~~e~~-~s~~~~~~l~~~~~~~k~l~~~~d~~~~~ 565 (568)
T COG5059 498 LNLRSSRSHSKFRDHLNGSNSSTKEL----S-LNQVDLAGSERK-VSQSVGELLRETQSLNKSLSSLGDVIHAL 565 (568)
T ss_pred hhhhhcccchhhhhcccchhhhhHHH----H-hhhhhccccccc-hhhhhHHHHHhhHhhhhccccchhhhhhc
Confidence 47789999999997775543222211 1 799999999999 99999999999999999999999999875
No 69
>PRK01156 chromosome segregation protein; Provisional
Probab=92.08 E-value=41 Score=42.22 Aligned_cols=105 Identities=14% Similarity=0.176 Sum_probs=58.5
Q ss_pred hhhhhHhhhHhHhHhhHHHHHHhhhhhhhHHHHHHhHHHHHhHhHHHhhhcccceeeEeeccccccCCcccccccccchh
Q 002212 702 YLNQKKEQLVHLECCKREIEDALGKVQRSEAELRNNLALLKSKLEEENRRQENEKVLFAIDNIEKVDHPQRNWNLGGKAT 781 (953)
Q Consensus 702 ~~~~k~~~l~~l~~~k~~~~~~~~~~~~~e~e~~~~~~~~k~k~~~e~~~~e~e~vl~~idn~~~~~~~~~~~~~~gka~ 781 (953)
|++..+.++..+...++++.....++. ++...|..++..+.+- .....
T Consensus 620 ~~~~le~~~~~le~~~~~l~~~~~~i~----~~~~~i~~l~~~i~~l----------------------------~~~~~ 667 (895)
T PRK01156 620 SIREIENEANNLNNKYNEIQENKILIE----KLRGKIDNYKKQIAEI----------------------------DSIIP 667 (895)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHH----------------------------Hhhhh
Confidence 566666677777777777776644443 3344444444444432 11112
Q ss_pred hhhccHHHHhhhHHHHHHHhhhhhhhHHHhhhhhhhhccchhhHHHHHHHHHhhhhh
Q 002212 782 ELLKSEEEKTKLQTELKLCRERLGVVKREFEDLTKKSWKIDSDLQTVQMEIQKSSRS 838 (953)
Q Consensus 782 ~llk~ee~~~kl~~e~k~~~e~l~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 838 (953)
++-..++.=..+..+++..++++..+...+..+..+...+..+|..+..++.+.-+.
T Consensus 668 ~~~~~~~~~~~~~~~~~~l~~~l~~l~~~~~~l~~~i~~l~~~~~~l~eel~~~~~~ 724 (895)
T PRK01156 668 DLKEITSRINDIEDNLKKSRKALDDAKANRARLESTIEILRTRINELSDRINDINET 724 (895)
T ss_pred hhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHH
Confidence 223345555566666666666666666666666666666666666666666544333
No 70
>KOG0612 consensus Rho-associated, coiled-coil containing protein kinase [Signal transduction mechanisms]
Probab=92.07 E-value=51 Score=43.34 Aligned_cols=42 Identities=17% Similarity=0.188 Sum_probs=29.7
Q ss_pred hHHHHhhhHhhhhhhhHhhhhhHHHHHHhhhhhhHHhhHHHH
Q 002212 618 SVEKAFAEVDKLSGDIVAMEDSIQAKQQQCGSLKHLCSEMQE 659 (953)
Q Consensus 618 ~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 659 (953)
.+|...-+-..++..+.+++..+.--+....+++..+-..++
T Consensus 610 ~~e~~~~~~~~~~e~~~~l~~~i~sL~~~~~~~~~~l~k~~e 651 (1317)
T KOG0612|consen 610 ELEKERRQRTEISEIIAELKEEISSLEETLKAGKKELLKVEE 651 (1317)
T ss_pred HHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHhhhhHHHHHHH
Confidence 456666667777888888887777777777777666665555
No 71
>PF05622 HOOK: HOOK protein; InterPro: IPR008636 This family consists of several HOOK1, 2 and 3 proteins from different eukaryotic organisms. The different members of the Homo sapiens gene family are HOOK1, HOOK2 and HOOK3. Different domains have been identified in the three Homo sapiens HOOK proteins, and it was demonstrated that the highly conserved NH2-domain mediates attachment to microtubules, whereas the central coiled-coil motif mediates homodimerisation and the more divergent C-terminal domains are involved in binding to specific organelles (organelle-binding domains). It has been demonstrated that endogenous HOOK3 binds to Golgi membranes [], whereas both HOOK1 and HOOK2 are localised to discrete but unidentified cellular structures. In mice the Hook1 gene is predominantly expressed in the testis. Hook1 function is necessary for the correct positioning of microtubular structures within the haploid germ cell. Disruption of Hook1 function in mice causes abnormal sperm head shape and fragile attachment of the flagellum to the sperm head [].; GO: 0008017 microtubule binding, 0000226 microtubule cytoskeleton organization, 0005737 cytoplasm; PDB: 1WIX_A.
Probab=91.69 E-value=0.16 Score=61.72 Aligned_cols=51 Identities=25% Similarity=0.427 Sum_probs=0.0
Q ss_pred hhhHHHHHHHHHHHH-------HHHHHHHHHHHhHHHHHHHhhHHHHHhhhHHHHHHH
Q 002212 493 NLIELYERKEMEMKR-------EAENLELQLAEMNEENEKLLGLYEKAMQERDEFKRM 543 (953)
Q Consensus 493 ~l~~~~~~~~~~~~~-------~~~~L~~ql~e~~~en~kl~~lye~am~e~d~~~r~ 543 (953)
..++.|.+.+.+++. ++..|+..+..+.+.+.-|..-.+..+.|||.++-.
T Consensus 363 ~qle~~k~qi~eLe~~l~~~~~~~~~l~~e~~~L~ek~~~l~~eke~l~~e~~~L~e~ 420 (713)
T PF05622_consen 363 SQLEEYKKQIQELEQKLSEESRRADKLEFENKQLEEKLEALEEEKERLQEERDSLRET 420 (713)
T ss_dssp ----------------------------------------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344555555544443 344444444455555555555556666667666543
No 72
>PF09730 BicD: Microtubule-associated protein Bicaudal-D; InterPro: IPR018477 BicD proteins consist of three coiled-coiled domains and are involved in dynein-mediated minus end-directed transport from the Golgi apparatus to the endoplasmic reticulum (ER) []. Glycogen synthase kinase-3beta (GSK-3beta) is required for the binding of BICD to dynein but not to dynactin, acting to maintain the anchoring of microtubules to the centromere []. It appears that amino-acid residues 437-617 of BicD and the kinase activity of GSK-3 are necessary for the formation of a complex between BicD and GSK-3beta in intact cells [].; GO: 0006810 transport, 0005794 Golgi apparatus
Probab=90.60 E-value=56 Score=41.04 Aligned_cols=58 Identities=24% Similarity=0.222 Sum_probs=30.1
Q ss_pred hhhHHHHHHHHhhHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHhhccCchhhhhhh
Q 002212 351 EENEFLRMQAIHNQAEMETLRKQLEFSLDEKEKLERHVSDLVKKLEEQTCPISAKEET 408 (953)
Q Consensus 351 ~Ene~Lr~~~~~~~~El~~~~k~l~~clEen~kl~r~i~~L~~el~~~~~~~~~~~~~ 408 (953)
-|++.+..++.....|++-+...+.--..=+.-.++++++--.-|+..|+.+-..+.+
T Consensus 121 vefE~~Khei~rl~Ee~~~l~~qlee~~rLk~iae~qleEALesl~~EReqk~~LrkE 178 (717)
T PF09730_consen 121 VEFEGLKHEIKRLEEEIELLNSQLEEAARLKEIAEKQLEEALESLKSEREQKNALRKE 178 (717)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4566666666666666666555544333333334445555555555555555444333
No 73
>PF12128 DUF3584: Protein of unknown function (DUF3584); InterPro: IPR021979 This family consist of uncharacterised bacterial proteins.
Probab=90.59 E-value=69 Score=42.09 Aligned_cols=45 Identities=18% Similarity=0.114 Sum_probs=27.9
Q ss_pred HHHHHHHHHHh--hhhhhhhHHHHHHHHHHHHHHHhhHhhhccCCcc
Q 002212 292 EECLKEIESFY--EGGEREMMSQQIMVLQNKLLEALDWKLMHESDSS 336 (953)
Q Consensus 292 e~L~eEIq~Lq--eegERE~lleeIs~Lqd~Lle~ld~k~~~e~~~v 336 (953)
..+..++...+ ...++..+...+....+.|-.+-+.+..++...+
T Consensus 298 ~~l~~~~~e~~~~~~~~~~~~~~~l~~~~~~L~~i~~~~~~ye~~~i 344 (1201)
T PF12128_consen 298 EKLEDEIKELRDELNKELSALNADLARIKSELDEIEQQKKDYEDADI 344 (1201)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCH
Confidence 33334444433 3556677777788888887777777766665444
No 74
>PF08317 Spc7: Spc7 kinetochore protein; InterPro: IPR013253 This entry consists of cell division proteins which are required for kinetochore-spindle association [].
Probab=90.37 E-value=25 Score=39.40 Aligned_cols=121 Identities=15% Similarity=0.167 Sum_probs=63.9
Q ss_pred HHHHhhhHhhhhhhhHhhhhhHHHHHHhhhh-----hhHHhhHHHHhHHHHHhHHHhhhhhcccccchhhHHHHHHHhhh
Q 002212 619 VEKAFAEVDKLSGDIVAMEDSIQAKQQQCGS-----LKHLCSEMQERKALVDNKLMALKYSLSSFSSSAAYFEQRAARSR 693 (953)
Q Consensus 619 ~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----l~~~~~~~~~~~~~~~~k~~~~~~~~~~f~~~~~~~~~~~~~~~ 693 (953)
||.----..+|.+.|..-..-++....++.. .+.-.+-..+-|.+.+..|-.+|- .+-..+-..||+-|-..-.
T Consensus 70 Lely~~~c~EL~~~I~egr~~~~~~E~~~~~~nPpLf~EY~~a~~d~r~~m~~q~~~vK~-~aRl~aK~~WYeWR~~ll~ 148 (325)
T PF08317_consen 70 LELYQFSCRELKKYISEGRQIFEEIEEETYESNPPLFREYYTADPDMRLLMDNQFQLVKT-YARLEAKKMWYEWRMQLLE 148 (325)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCHHHHHHHcCCHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHH
Confidence 3444444566666666555444444444322 233334456677888888877763 2334566778888855433
Q ss_pred hccccchhhhhhhHhhhHhHhHhhHHHHHHhhhhhhhHHHHHHhHHHHHhHhHH
Q 002212 694 ARVTTSSTYLNQKKEQLVHLECCKREIEDALGKVQRSEAELRNNLALLKSKLEE 747 (953)
Q Consensus 694 ~~~~~~~~~~~~k~~~l~~l~~~k~~~~~~~~~~~~~e~e~~~~~~~~k~k~~~ 747 (953)
.-.+.... .+..|+....-+......+...=..+++..+.|+.++..
T Consensus 149 gl~~~L~~-------~~~~L~~D~~~L~~~~~~l~~~~~~l~~~~~~L~~e~~~ 195 (325)
T PF08317_consen 149 GLKEGLEE-------NLELLQEDYAKLDKQLEQLDELLPKLRERKAELEEELEN 195 (325)
T ss_pred HHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333333 344445555555555555554444555555555555544
No 75
>PF09726 Macoilin: Transmembrane protein; InterPro: IPR019130 This entry represents the multi-pass transmembrane protein Macoilin, which is highly conserved in eukaryotes. ; GO: 0016021 integral to membrane
Probab=90.18 E-value=48 Score=41.39 Aligned_cols=72 Identities=26% Similarity=0.419 Sum_probs=53.6
Q ss_pred HHHHHhhhhhhHHhhHHHHhHHHHHhHHHhhhhhcccccchhhHHHHHHHhhhhccccchhhhhhhHhhhHhHhHhhHHH
Q 002212 641 QAKQQQCGSLKHLCSEMQERKALVDNKLMALKYSLSSFSSSAAYFEQRAARSRARVTTSSTYLNQKKEQLVHLECCKREI 720 (953)
Q Consensus 641 ~~~~~~~~~l~~~~~~~~~~~~~~~~k~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~l~~l~~~k~~~ 720 (953)
+..+.+...|-..++-|||+-.-+++-||| |.| | |-+=...|-..|+++
T Consensus 583 ~e~~~~~e~L~~aL~amqdk~~~LE~sLsa------------------Etr----i---------KldLfsaLg~akrq~ 631 (697)
T PF09726_consen 583 KESEKDTEVLMSALSAMQDKNQHLENSLSA------------------ETR----I---------KLDLFSALGDAKRQL 631 (697)
T ss_pred hhhhhhHHHHHHHHHHHHHHHHHHHHhhhH------------------HHH----H---------HHHHHHHHHHHHHHH
Confidence 445678899999999999999999998854 221 1 223345677778888
Q ss_pred HHHhhhhhhhHHHHHHhHHHHHhHhHH
Q 002212 721 EDALGKVQRSEAELRNNLALLKSKLEE 747 (953)
Q Consensus 721 ~~~~~~~~~~e~e~~~~~~~~k~k~~~ 747 (953)
+.+.+.+..-|.|| ..||.|+.+
T Consensus 632 ei~~~~~~~~d~ei----~~lk~ki~~ 654 (697)
T PF09726_consen 632 EIAQGQLRKKDKEI----EELKAKIAQ 654 (697)
T ss_pred HHHHHHHHHHHHHH----HHHHHHHHH
Confidence 88888888888774 568888876
No 76
>KOG0250 consensus DNA repair protein RAD18 (SMC family protein) [Replication, recombination and repair]
Probab=90.17 E-value=71 Score=41.59 Aligned_cols=40 Identities=28% Similarity=0.386 Sum_probs=25.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHhHHHHHHHhhHHHHHhhhHH
Q 002212 499 ERKEMEMKREAENLELQLAEMNEENEKLLGLYEKAMQERD 538 (953)
Q Consensus 499 ~~~~~~~~~~~~~L~~ql~e~~~en~kl~~lye~am~e~d 538 (953)
+.+.+.++.+++.++.|+..+.++-+.++.=|..-=.|++
T Consensus 400 e~k~~~L~~evek~e~~~~~L~~e~~~~~~~~~~~~ee~~ 439 (1074)
T KOG0250|consen 400 ENKLEQLKKEVEKLEEQINSLREELNEVKEKAKEEEEEKE 439 (1074)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHH
Confidence 3355666677777777777777777777665544333443
No 77
>PHA02562 46 endonuclease subunit; Provisional
Probab=89.69 E-value=48 Score=38.90 Aligned_cols=45 Identities=22% Similarity=0.231 Sum_probs=23.7
Q ss_pred HHHHhhhhhhhHHHhhhhhhhhccchhhHHHHHHHHHhhhhhHHH
Q 002212 797 LKLCRERLGVVKREFEDLTKKSWKIDSDLQTVQMEIQKSSRSVEE 841 (953)
Q Consensus 797 ~k~~~e~l~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e 841 (953)
+.....+...++.+|..|.....+++.++..+..++.+......+
T Consensus 353 i~~~~~~~~~l~~ei~~l~~~~~~~~~~l~~l~~~l~~~~~~~~~ 397 (562)
T PHA02562 353 LITLVDKAKKVKAAIEELQAEFVDNAEELAKLQDELDKIVKTKSE 397 (562)
T ss_pred HHHHHHHHHHHHHHHHHHHhhhhchHHHHHHHHHHHHHHHHHHHH
Confidence 333444445555666666555555555555555555554444444
No 78
>PLN02939 transferase, transferring glycosyl groups
Probab=89.45 E-value=38 Score=43.69 Aligned_cols=127 Identities=26% Similarity=0.250 Sum_probs=76.0
Q ss_pred HHHHhHHHHHHHHHHhhcCCCchhhhHHHHHHHHHHHHHHHh----hhhhh-----------hhHHHHHHHHHHHHHHHh
Q 002212 261 MRLRFREAGIKRLEAVASGKISAETHLLKEKEECLKEIESFY----EGGER-----------EMMSQQIMVLQNKLLEAL 325 (953)
Q Consensus 261 M~LRfREdkI~rLE~l~~g~~sae~~Ll~Ene~L~eEIq~Lq----eegER-----------E~lleeIs~Lqd~Lle~l 325 (953)
.++-+-+..+..|+.+- ..+.|+++|+.+|..|. +...| +.+.+++..|++.|+..-
T Consensus 143 ~~~~~~~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 214 (977)
T PLN02939 143 NILLLNQARLQALEDLE--------KILTEKEALQGKINILEMRLSETDARIKLAAQEKIHVEILEEQLEKLRNELLIRG 214 (977)
T ss_pred hhHhHHHHHHHHHHHHH--------HHHHHHHHHHhhHHHHHHHhhhhhhhhhhhhhccccchhhHHHHHHHhhhhhccc
Confidence 45555555566655543 56788999999999874 22222 344445566666554321
Q ss_pred hHhhhccCCccccCCCCCCCcccchhhhHHHHHHHHhhHHHHHHHHHHhhh---hHHHHHHHHHHHHHHHHHHhhccCch
Q 002212 326 DWKLMHESDSSAVQEPGSPWRTSVNEENEFLRMQAIHNQAEMETLRKQLEF---SLDEKEKLERHVSDLVKKLEEQTCPI 402 (953)
Q Consensus 326 d~k~~~e~~~v~~~~~~~~~~~s~~~Ene~Lr~~~~~~~~El~~~~k~l~~---clEen~kl~r~i~~L~~el~~~~~~~ 402 (953)
.. +.. + -.+.+.++..+.+||-.|+ +.|+-+..++.. +-|...+|+++-.-|...+.+..+..
T Consensus 215 ~~----~~~-~--~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 280 (977)
T PLN02939 215 AT----EGL-C--VHSLSKELDVLKEENMLLK-------DDIQFLKAELIEVAETEERVFKLEKERSLLDASLRELESKF 280 (977)
T ss_pred cc----ccc-c--cccHHHHHHHHHHHhHHHH-------HHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 11 111 1 2445555566667777766 667766666554 44556677777777888887777777
Q ss_pred hhhhhhh
Q 002212 403 SAKEETQ 409 (953)
Q Consensus 403 ~~~~~~~ 409 (953)
..+.+.+
T Consensus 281 ~~~~~~~ 287 (977)
T PLN02939 281 IVAQEDV 287 (977)
T ss_pred Hhhhhhh
Confidence 6555555
No 79
>PF00038 Filament: Intermediate filament protein; InterPro: IPR016044 Intermediate filaments (IF) [, , ] are proteins which are primordial components of the cytoskeleton and the nuclear envelope. They generally form filamentous structures 8 to 14 nm wide. IF proteins are members of a very large multigene family of proteins which has been subdivided in five major subgroups: Type I: Acidic cytokeratins. Type II: Basic cytokeratins. Type III: Vimentin, desmin, glial fibrillary acidic protein (GFAP), peripherin, and plasticin. Type IV: Neurofilaments L, H and M, alpha-internexin and nestin. Type V: Nuclear lamins A, B1, B2 and C. All IF proteins are structurally similar in that they consist of: a central rod domain comprising some 300 to 350 residues which is arranged in coiled-coiled alpha-helices, with at least two short characteristic interruptions; a N-terminal non-helical domain (head) of variable length; and a C-terminal domain (tail) which is also non-helical, and which shows extreme length variation between different IF proteins. While IF proteins are evolutionary and structurally related, they have limited sequence homologies except in several regions of the rod domain. This entry represents the central rod domain found in IF proteins.; PDB: 3TNU_B 3KLT_D 1GK4_F 3TRT_A 3G1E_A 3UF1_C 1GK6_B 1GK7_A 3TYY_B 3V4W_A ....
Probab=89.23 E-value=38 Score=37.03 Aligned_cols=192 Identities=22% Similarity=0.323 Sum_probs=100.8
Q ss_pred hHHHHHHHHHHHHHHHhhh------hhhhhHHHHHHHHHHHHHHHhhHhhhccCCccccCCCCCCCcccchhhhHHHHHH
Q 002212 286 HLLKEKEECLKEIESFYEG------GEREMMSQQIMVLQNKLLEALDWKLMHESDSSAVQEPGSPWRTSVNEENEFLRMQ 359 (953)
Q Consensus 286 ~Ll~Ene~L~eEIq~Lqee------gERE~lleeIs~Lqd~Lle~ld~k~~~e~~~v~~~~~~~~~~~s~~~Ene~Lr~~ 359 (953)
+|-.+|..|..+|..+... +=+.+...+|..|+..+-.+ ..|+..+.++
T Consensus 22 ~LE~~N~~Le~~i~~~~~~~~~~~~~~~~~ye~el~~lr~~id~~-------------------------~~eka~l~~e 76 (312)
T PF00038_consen 22 FLEQENKRLESEIEELREKKGEEVSRIKEMYEEELRELRRQIDDL-------------------------SKEKARLELE 76 (312)
T ss_dssp HHHHHHHHHHHHHHH---------HHHHHHHHHHHHCHHHHHHHH-------------------------HHHHHHHHHH
T ss_pred HHHHHhhhhHHHHHHHHhcccccCcccccchhhHHHHhHHhhhhH-------------------------HHHhhHHhhh
Confidence 5566777777777776532 13456666777777765433 3344566677
Q ss_pred HHhhHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHhhccCchhhhhhhhcccccCCCccccchhhHHHHHHHHHHHHhh
Q 002212 360 AIHNQAEMETLRKQLEFSLDEKEKLERHVSDLVKKLEEQTCPISAKEETQGFQLSTNVPTINFDDQVELKTMVDAIAVAS 439 (953)
Q Consensus 360 ~~~~~~El~~~~k~l~~clEen~kl~r~i~~L~~el~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~e~kt~v~aia~as 439 (953)
..+...++++++.++......+..+...|..|...+....-+...++. ++.++-+-|+...
T Consensus 77 ~~~l~~e~~~~r~k~e~e~~~~~~le~el~~lrk~ld~~~~~r~~le~-------------------~i~~L~eEl~fl~ 137 (312)
T PF00038_consen 77 IDNLKEELEDLRRKYEEELAERKDLEEELESLRKDLDEETLARVDLEN-------------------QIQSLKEELEFLK 137 (312)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------------------HHHHHHHHHHHHH
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhHhHHHH-------------------HHHHHHHHHHHHH
Confidence 777788888888888888888888888888777666655444433333 3334444444332
Q ss_pred -hhHHHhhhhhhhccccchhhHHHHHHHHhhhhhhhhccHHHHHHHHHHHHhhh-hhhHHHHHHHHHHHHHHHHHHHHHH
Q 002212 440 -QREAEAHQTAIGLSKMHDELRLELEVLNKEKSEFNKLNDELQLKHKVLIEEKS-NLIELYERKEMEMKREAENLELQLA 517 (953)
Q Consensus 440 -q~~~e~~~~~i~l~k~~~~~~~~~e~~~~~~~e~~~ln~e~~~~~~~l~e~~~-~l~~~~~~~~~~~~~~~~~L~~ql~ 517 (953)
.|+.++..-.-.+. + ....++..--.+++...=.+++..+......++ ..-..|+.++.++...+..-...+.
T Consensus 138 ~~heeEi~~L~~~~~-~----~~~~e~~~~~~~dL~~~L~eiR~~ye~~~~~~~~e~e~~y~~k~~~l~~~~~~~~~~~~ 212 (312)
T PF00038_consen 138 QNHEEEIEELREQIQ-S----SVTVEVDQFRSSDLSAALREIRAQYEEIAQKNREELEEWYQSKLEELRQQSEKSSEELE 212 (312)
T ss_dssp HHHHHHHHTTSTT---------------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhhhhhhhhhhhccc-c----ccceeecccccccchhhhhhHHHHHHHHHhhhhhhhhhhcccccccccccccccccccc
Confidence 23333332221111 1 112233323333333333455555554444444 5566777777777766666555555
Q ss_pred HhHHHHHHH
Q 002212 518 EMNEENEKL 526 (953)
Q Consensus 518 e~~~en~kl 526 (953)
...+|+..+
T Consensus 213 ~~~~E~~~~ 221 (312)
T PF00038_consen 213 SAKEELKEL 221 (312)
T ss_dssp HHHHHHHHH
T ss_pred hhHhHHHHH
Confidence 555555433
No 80
>PRK04863 mukB cell division protein MukB; Provisional
Probab=89.13 E-value=1e+02 Score=41.84 Aligned_cols=142 Identities=17% Similarity=0.201 Sum_probs=73.2
Q ss_pred hhhHHHHHHHHHHHHHHhhhhhhhhhhhhhHHHHhhhHhhhhhhhHhhhhhHHHHHHhhhhhhHHhhHHHHhHHHHHhHH
Q 002212 589 TEDLNLVRLKLEKAQEKLSDSANTITLFGSVEKAFAEVDKLSGDIVAMEDSIQAKQQQCGSLKHLCSEMQERKALVDNKL 668 (953)
Q Consensus 589 ~~~l~~~~~k~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~k~ 668 (953)
..-+.-.+.+|-.++-++-.-+++..++.-+.+.+.. ---.-...+.-.......+.+|....++..+|+.-+..++
T Consensus 512 ~~~~~~~~~~~~~l~~~~~~q~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~ 588 (1486)
T PRK04863 512 AEQLQQLRMRLSELEQRLRQQQRAERLLAEFCKRLGK---NLDDEDELEQLQEELEARLESLSESVSEARERRMALRQQL 588 (1486)
T ss_pred HHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC---CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444555666666666665555555555444431110 0000111122223334456677777777777777777777
Q ss_pred HhhhhhcccccchhhHHHHH-------HHhhhhccccchhhhhhhHhhhHhHhHhhHHHHHHhhhhhhhHHH
Q 002212 669 MALKYSLSSFSSSAAYFEQR-------AARSRARVTTSSTYLNQKKEQLVHLECCKREIEDALGKVQRSEAE 733 (953)
Q Consensus 669 ~~~~~~~~~f~~~~~~~~~~-------~~~~~~~~~~~~~~~~~k~~~l~~l~~~k~~~~~~~~~~~~~e~e 733 (953)
-.|.-.++-+..-+.=|-+- ...+++.+..+...++--...+.+....-.+......+++..+..
T Consensus 589 ~qL~~~i~~l~~~ap~W~~a~~al~~L~eq~g~~~~~~~~v~~~mq~~~~~~~~~~~~~~~~~~~~~~L~~~ 660 (1486)
T PRK04863 589 EQLQARIQRLAARAPAWLAAQDALARLREQSGEEFEDSQDVTEYMQQLLERERELTVERDELAARKQALDEE 660 (1486)
T ss_pred HHHHHHHHHHHHhChHHHhhHHHHHHHHHhcchhhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 77777766665555556544 344556666666655554444444444433333333343333333
No 81
>COG1579 Zn-ribbon protein, possibly nucleic acid-binding [General function prediction only]
Probab=89.04 E-value=17 Score=39.83 Aligned_cols=76 Identities=32% Similarity=0.320 Sum_probs=53.6
Q ss_pred HHHHhhHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHhhccCchhhhhhhhcccccCCCccccchhhHHHHHHHHHHHH
Q 002212 358 MQAIHNQAEMETLRKQLEFSLDEKEKLERHVSDLVKKLEEQTCPISAKEETQGFQLSTNVPTINFDDQVELKTMVDAIAV 437 (953)
Q Consensus 358 ~~~~~~~~El~~~~k~l~~clEen~kl~r~i~~L~~el~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~e~kt~v~aia~ 437 (953)
-.+.+.+.|++.+++.+..-..+.+.+..+|..++.++++.++.+.-++... -.+-++.++..+--.|..
T Consensus 31 ~~l~k~~~e~e~~~~~~~~~~~e~e~le~qv~~~e~ei~~~r~r~~~~e~kl----------~~v~~~~e~~aL~~E~~~ 100 (239)
T COG1579 31 KALKKAKAELEALNKALEALEIELEDLENQVSQLESEIQEIRERIKRAEEKL----------SAVKDERELRALNIEIQI 100 (239)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----------hccccHHHHHHHHHHHHH
Confidence 3456788999999999999999999999999999999998887776544433 133345455555444444
Q ss_pred hhhhHH
Q 002212 438 ASQREA 443 (953)
Q Consensus 438 asq~~~ 443 (953)
|-++..
T Consensus 101 ak~r~~ 106 (239)
T COG1579 101 AKERIN 106 (239)
T ss_pred HHHHHH
Confidence 444433
No 82
>cd07627 BAR_Vps5p The Bin/Amphiphysin/Rvs (BAR) domain of yeast Sorting Nexin Vps5p. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Sorting nexins (SNXs) are Phox homology (PX) domain containing proteins that are involved in regulating membrane traffic and protein sorting in the endosomal system. SNXs differ from each other in their lipid-binding specificity, subcellular localization and specific function in the endocytic pathway. A subset of SNXs also contain BAR domains. The PX-BAR structural unit determines the specific membrane targeting of SNXs. Vsp5p is the yeast counterpart of human SNX1 and is part of the retromer complex, which functions in the endosome-to-Golgi retrieval of vacuolar protein sorting receptor Vps10p, the Golgi-resident membrane protein A-ALP, and endopeptidase Kex2. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in
Probab=88.00 E-value=39 Score=35.72 Aligned_cols=76 Identities=26% Similarity=0.231 Sum_probs=56.4
Q ss_pred hhHHHHHHhhhhhhHHhhHHHHhHHHH-HhHHH-hhhhhcccccchhhHHHHHHHhhhhccccchhhhhhhHhhhHhHh
Q 002212 638 DSIQAKQQQCGSLKHLCSEMQERKALV-DNKLM-ALKYSLSSFSSSAAYFEQRAARSRARVTTSSTYLNQKKEQLVHLE 714 (953)
Q Consensus 638 ~~~~~~~~~~~~l~~~~~~~~~~~~~~-~~k~~-~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~l~~l~ 714 (953)
.++......|...-.-++..+.|-+.- ..+|+ .|+|-+....|.-+.|.+|. ++...+.....+|.+++.+++.|.
T Consensus 58 ~~l~~~l~~~a~~~~~~~~~~~~~a~~e~~~l~~~L~ey~r~~~Svk~~~~~R~-~~~~~~~~~~~~L~k~~~~~~Kl~ 135 (216)
T cd07627 58 KSLSDLLAALAEVQKRIKESLERQALQDVLTLGVTLDEYIRSIGSVRAAFAQRQ-KLWQYWQSAESELSKKKAQLEKLK 135 (216)
T ss_pred hHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHh
Confidence 345555566666666777777776555 34555 78888888888889999996 677788888888888888888775
No 83
>KOG0995 consensus Centromere-associated protein HEC1 [Cell cycle control, cell division, chromosome partitioning]
Probab=87.93 E-value=75 Score=38.91 Aligned_cols=131 Identities=21% Similarity=0.203 Sum_probs=76.6
Q ss_pred hhHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHhhHhhhccCCccccCCCCCCCccc-chhhhHHHHHHHHhh
Q 002212 285 THLLKEKEECLKEIESFYEGGEREMMSQQIMVLQNKLLEALDWKLMHESDSSAVQEPGSPWRTS-VNEENEFLRMQAIHN 363 (953)
Q Consensus 285 ~~Ll~Ene~L~eEIq~LqeegERE~lleeIs~Lqd~Lle~ld~k~~~e~~~v~~~~~~~~~~~s-~~~Ene~Lr~~~~~~ 363 (953)
+++....+.|..||.. .+-|+|.+..++..|+.++ + ++++++.... |+.|+..|.-.+..+
T Consensus 290 ~~~~~~l~~l~~Eie~--kEeE~e~lq~~~d~Lk~~I----e------------~Q~iS~~dve~mn~Er~~l~r~l~~i 351 (581)
T KOG0995|consen 290 QHMEKKLEMLKSEIEE--KEEEIEKLQKENDELKKQI----E------------LQGISGEDVERMNLERNKLKRELNKI 351 (581)
T ss_pred HHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHH----H------------hcCCCHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444555555554 3446666777777776664 1 3456555555 888999999888888
Q ss_pred HHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHhhccCchhhhhhh-----hc---ccccCCCccccchhhHH--HHHHHH
Q 002212 364 QAEMETLRKQLEFSLDEKEKLERHVSDLVKKLEEQTCPISAKEET-----QG---FQLSTNVPTINFDDQVE--LKTMVD 433 (953)
Q Consensus 364 ~~El~~~~k~l~~clEen~kl~r~i~~L~~el~~~~~~~~~~~~~-----~~---~~~~~~~~~~~~~~q~e--~kt~v~ 433 (953)
+.+++.+.|+....-.+ .++..+.++..+.++.+.....+-. .| .|.......+++.+++. ++.++|
T Consensus 352 ~~~~d~l~k~vw~~~l~---~~~~f~~le~~~~~~~~l~~~i~l~~~~~~~n~~~~pe~~~~~~~d~k~~V~~~l~el~~ 428 (581)
T KOG0995|consen 352 QSELDRLSKEVWELKLE---IEDFFKELEKKFIDLNSLIRRIKLGIAENSKNLERNPERAATNGVDLKSYVKPLLKELLD 428 (581)
T ss_pred HHHHHHHHHHHHhHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCcCCccCccccccchhHhHHHHHHHHH
Confidence 88888888877644333 3444444444444444444322211 11 23333333456677754 678888
Q ss_pred HHH
Q 002212 434 AIA 436 (953)
Q Consensus 434 aia 436 (953)
.|.
T Consensus 429 ei~ 431 (581)
T KOG0995|consen 429 EIS 431 (581)
T ss_pred HHH
Confidence 885
No 84
>PF05701 WEMBL: Weak chloroplast movement under blue light; InterPro: IPR008545 This family consists of several plant proteins of unknown function. Several sequences in this family are described as being myosin heavy chain-like.
Probab=87.62 E-value=72 Score=38.33 Aligned_cols=153 Identities=15% Similarity=0.138 Sum_probs=98.6
Q ss_pred hchhhhhhhhhHHHHHHHHHHHHHHhhhhhhh-hhhhhhHHHHhhhHhhhhhhhHhhhhhHHHHHHhhhhhhHHhhHHHH
Q 002212 581 LNLANIKVTEDLNLVRLKLEKAQEKLSDSANT-ITLFGSVEKAFAEVDKLSGDIVAMEDSIQAKQQQCGSLKHLCSEMQE 659 (953)
Q Consensus 581 ~~~~~~~~~~~l~~~~~k~~~~~~~~~~~~~~-~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 659 (953)
....+..+..+|+.++.+|+.+...-..+-.. ..+..-|..+..+++..-.+...+...+.....++...+..+..++.
T Consensus 335 a~~~v~~L~~eL~~~r~eLea~~~~e~~~k~~~~~l~~~Lqql~~Eae~Ak~ea~~~~~E~~~~k~E~e~~ka~i~t~E~ 414 (522)
T PF05701_consen 335 ASSEVSSLEAELNKTRSELEAAKAEEEKAKEAMSELPKALQQLSSEAEEAKKEAEEAKEEVEKAKEEAEQTKAAIKTAEE 414 (522)
T ss_pred HHhHHhhHHHHHHHHHHHHHHHHhhhcchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34566778889999999999888877765432 34556677777777777777777777777778888888888888888
Q ss_pred hHHHHHhHHHhhhhhcccccchhhHHHHHHHhhhhccccchhhhhhhHhh----hHhHhHhhHHHHHHhhhhhhhHHHHH
Q 002212 660 RKALVDNKLMALKYSLSSFSSSAAYFEQRAARSRARVTTSSTYLNQKKEQ----LVHLECCKREIEDALGKVQRSEAELR 735 (953)
Q Consensus 660 ~~~~~~~k~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~----l~~l~~~k~~~~~~~~~~~~~e~e~~ 735 (953)
|-.++-+-+-|-|-| +++|.+.+++.+++-...... =.....+..|.+.-.+|++++|.--.
T Consensus 415 rL~aa~ke~eaaKas--------------Ea~Ala~ik~l~e~~~~~~~~~~~~~~~Vtls~eEy~~L~~ka~e~ee~a~ 480 (522)
T PF05701_consen 415 RLEAALKEAEAAKAS--------------EALALAEIKALSESESSSRASDSESSSKVTLSLEEYESLSKKAEEAEELAE 480 (522)
T ss_pred HHHHHHHHHHHHHHH--------------HHHHHHHHHHhhcccccccccccCCCCCeeecHHHHHHHHHHHHHHHHHHH
Confidence 877777766554432 455555555544433322221 12234455666666666666666555
Q ss_pred HhHHHHHhHhHH
Q 002212 736 NNLALLKSKLEE 747 (953)
Q Consensus 736 ~~~~~~k~k~~~ 747 (953)
.+++.--..++.
T Consensus 481 kkva~A~aqve~ 492 (522)
T PF05701_consen 481 KKVAAAMAQVEA 492 (522)
T ss_pred HHHHHHHHHHHH
Confidence 555555544443
No 85
>PF00261 Tropomyosin: Tropomyosin; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells. In striated muscle, tropomyosin mediate the interactions between the troponin complex and actin so as to regulate muscle contraction []. The role of tropomyosin in smooth muscle and non-muscle tissues is not clear. Tropomyosin is an alpha-helical protein that forms a coiled-coil structure of 2 parallel helices containing 2 sets of 7 alternating actin binding sites []. There are multiple cell-specific isoforms, created by differential splicing of the messenger RNA from one gene, but the proportions of the isoforms vary between different cell types. Muscle isoforms of tropomyosin are characterised by having 284 amino acid residues and a highly conserved N-terminal region, whereas non-muscle forms are generally smaller and are heterogeneous in their N-terminal region. This entry represents tropomyosin (Tmp) 1, 2 and 3. Within the yeast Tmp1 and Tmp2, biochemical and sequence analyses indicate that Tpm2 spans four actin monomers along a filament, whereas Tpm1 spans five. Despite its shorter length, Tpm2 can compete with Tpm1 for binding to F-actin. Over-expression of Tpm2 in vivo alters the axial budding of haploids to a bipolar pattern, and this can be partially suppressed by co-over-expression of Tpm1. This suggests distinct functions for the two tropomyosins, and indicates that the ratio between them is important for correct morphogenesis [].; PDB: 2EFR_A 2Z5H_C 2Z5I_D 2D3E_B 2EFS_D 3U59_B 1C1G_C 1IHQ_A 3AZD_B 1MV4_B ....
Probab=87.56 E-value=21 Score=38.34 Aligned_cols=157 Identities=18% Similarity=0.202 Sum_probs=98.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhHHHHHHHhhHHHHHhhhHHHHHHHHhhhcCCccccccccccccchhhcccccccccc
Q 002212 497 LYERKEMEMKREAENLELQLAEMNEENEKLLGLYEKAMQERDEFKRMISLCGQNRAEASGEIYCPEKLVEIDGEAAFADM 576 (953)
Q Consensus 497 ~~~~~~~~~~~~~~~L~~ql~e~~~en~kl~~lye~am~e~d~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 576 (953)
-++..+..+.+++.-|+..|+...+.-.....=++.|-+.-|+.-|.+-...+. ...++.
T Consensus 33 ~aE~e~~~l~rri~~lE~~le~~eerL~~~~~kL~~~e~~~de~er~~k~lE~r--------------------~~~~ee 92 (237)
T PF00261_consen 33 KAEAEVASLQRRIQLLEEELERAEERLEEATEKLEEAEKRADESERARKVLENR--------------------EQSDEE 92 (237)
T ss_dssp HHHHHHHHHHHHHHHHHCCCHHHHCCCCHHHHHHHHHHHHHHHHCHHHHHHHHH--------------------HHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhH--------------------HHHHHH
Confidence 344556666777777766666555444444444445556666666555332221 011111
Q ss_pred chhhhchhhhhhhhhHHHHHHHHHHHHHHhhhhhhhhh-hhhhHHHHhhhHhhhhhhhHhhhhhHHHHHHhhhhhhHHhh
Q 002212 577 ETEQLNLANIKVTEDLNLVRLKLEKAQEKLSDSANTIT-LFGSVEKAFAEVDKLSGDIVAMEDSIQAKQQQCGSLKHLCS 655 (953)
Q Consensus 577 ~~~~~~~~~~~~~~~l~~~~~k~~~~~~~~~~~~~~~~-~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 655 (953)
. +..+-..|.-++.-++.++.|+-.+...+. +-+-|+.|-..++.+...|...+..++..-..+.+|.....
T Consensus 93 r-------i~~lE~~l~ea~~~~ee~e~k~~E~~rkl~~~E~~Le~aEeR~e~~E~ki~eLE~el~~~~~~lk~lE~~~~ 165 (237)
T PF00261_consen 93 R-------IEELEQQLKEAKRRAEEAERKYEEVERKLKVLEQELERAEERAEAAESKIKELEEELKSVGNNLKSLEASEE 165 (237)
T ss_dssp H-------HHHCHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred H-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhchhHHHHHHHHHHHHHHHHHhhhhhh
Confidence 1 222333344444445555555544444332 34668888889999999999999999999999999999999
Q ss_pred HHHHhHHHHHhHHHhhhhhcccccc
Q 002212 656 EMQERKALVDNKLMALKYSLSSFSS 680 (953)
Q Consensus 656 ~~~~~~~~~~~k~~~~~~~~~~f~~ 680 (953)
++..|-.-++.++..|.--|...-.
T Consensus 166 ~~~~re~~~e~~i~~L~~~lkeaE~ 190 (237)
T PF00261_consen 166 KASEREDEYEEKIRDLEEKLKEAEN 190 (237)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999777766655533
No 86
>PF13851 GAS: Growth-arrest specific micro-tubule binding
Probab=87.45 E-value=35 Score=36.18 Aligned_cols=58 Identities=28% Similarity=0.405 Sum_probs=52.4
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHhhHHHHHhhhHHHHHHHHhhhcCC
Q 002212 493 NLIELYERKEMEMKREAENLELQLAEMNEENEKLLGLYEKAMQERDEFKRMISLCGQN 550 (953)
Q Consensus 493 ~l~~~~~~~~~~~~~~~~~L~~ql~e~~~en~kl~~lye~am~e~d~~~r~~~~~~~~ 550 (953)
.+|+.+-..+.+++......++.+.++..||..|.-=-.+|-+|+.+|++.+..|+..
T Consensus 27 ~lIksLKeei~emkk~e~~~~k~m~ei~~eN~~L~epL~~a~~e~~eL~k~L~~y~kd 84 (201)
T PF13851_consen 27 ELIKSLKEEIAEMKKKEERNEKLMAEISQENKRLSEPLKKAEEEVEELRKQLKNYEKD 84 (201)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5777777889999999999999999999999999999999999999999999775543
No 87
>PHA02562 46 endonuclease subunit; Provisional
Probab=87.42 E-value=39 Score=39.67 Aligned_cols=22 Identities=18% Similarity=0.277 Sum_probs=12.2
Q ss_pred hHHHHHHHHHHHHHHhhhhhhh
Q 002212 591 DLNLVRLKLEKAQEKLSDSANT 612 (953)
Q Consensus 591 ~l~~~~~k~~~~~~~~~~~~~~ 612 (953)
.+.-.+.+++.+++.+.....+
T Consensus 307 ~i~~l~~~l~~l~~~i~~~~~~ 328 (562)
T PHA02562 307 KLKELQHSLEKLDTAIDELEEI 328 (562)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 4445555666666666555444
No 88
>PF09726 Macoilin: Transmembrane protein; InterPro: IPR019130 This entry represents the multi-pass transmembrane protein Macoilin, which is highly conserved in eukaryotes. ; GO: 0016021 integral to membrane
Probab=87.00 E-value=79 Score=39.60 Aligned_cols=38 Identities=24% Similarity=0.326 Sum_probs=23.1
Q ss_pred hhhHHHHHHHHhhHHHHHHHHHHhhhhHHHHHHHHHHH
Q 002212 351 EENEFLRMQAIHNQAEMETLRKQLEFSLDEKEKLERHV 388 (953)
Q Consensus 351 ~Ene~Lr~~~~~~~~El~~~~k~l~~clEen~kl~r~i 388 (953)
+-.+.+|.-..++..|+..+|.+|-..-|.+..|+.++
T Consensus 538 e~~e~~r~r~~~lE~E~~~lr~elk~kee~~~~~e~~~ 575 (697)
T PF09726_consen 538 ECAESCRQRRRQLESELKKLRRELKQKEEQIRELESEL 575 (697)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44455555556666666666666666666666665555
No 89
>PF05557 MAD: Mitotic checkpoint protein; InterPro: IPR008672 This family consists of several eukaryotic mitotic checkpoint (Mitotic arrest deficient or MAD) proteins. The mitotic spindle checkpoint monitors proper attachment of the bipolar spindle to the kinetochores of aligned sister chromatids and causes a cell cycle arrest in prometaphase when failures occur. Multiple components of the mitotic spindle checkpoint have been identified in Saccharomyces cerevisiae and higher eukaryotes. In Saccharomyces cerevisiae, the existence of a Mad1-dependent complex containing Mad2, Mad3, Bub3 and Cdc20 has been demonstrated [].; PDB: 1GO4_F 4DZO_A.
Probab=86.19 E-value=3.4 Score=50.66 Aligned_cols=60 Identities=32% Similarity=0.321 Sum_probs=33.8
Q ss_pred HHHHhHHHHHhHhHHH----hhhcccceeeEeeccccccCCcccccccccchhhhhccHHHHhhhHHHHHHHhhhhhh
Q 002212 733 ELRNNLALLKSKLEEE----NRRQENEKVLFAIDNIEKVDHPQRNWNLGGKATELLKSEEEKTKLQTELKLCRERLGV 806 (953)
Q Consensus 733 e~~~~~~~~k~k~~~e----~~~~e~e~vl~~idn~~~~~~~~~~~~~~gka~~llk~ee~~~kl~~e~k~~~e~l~~ 806 (953)
.|+..++.|..+|+.. .-....=|||-.-||... +|... | ...-+.|++|-..-+.++..
T Consensus 521 ~L~~~~~~Le~~l~~~~L~g~~~~~~trVL~lr~NP~~------------~~~~~-k-~~~l~~L~~En~~L~~~l~~ 584 (722)
T PF05557_consen 521 RLRQELEELESELEKLTLQGEFNPSKTRVLHLRDNPTS------------KAEQI-K-KSTLEALQAENEDLLARLRS 584 (722)
T ss_dssp HHHHHHHHHHHHHHHHCCCT--BTTTEEEEEESS-HHH------------HHHHH-H-HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhhhccccCCCCceeeeeCCCcHH------------HHHHH-H-HHHHHHHHHHHHHHHHHHHh
Confidence 4556666777777641 123456688888887542 22222 2 34556777777777777633
No 90
>COG1579 Zn-ribbon protein, possibly nucleic acid-binding [General function prediction only]
Probab=85.32 E-value=31 Score=37.96 Aligned_cols=115 Identities=20% Similarity=0.343 Sum_probs=82.1
Q ss_pred hhhhhhhhHHHHHHHHHHHHHHhhhhhhhhhhhhhHHHHhhhHhhhhhhhHhhhhhHHHHHHhhhhhhHHhhHHHHhHHH
Q 002212 584 ANIKVTEDLNLVRLKLEKAQEKLSDSANTITLFGSVEKAFAEVDKLSGDIVAMEDSIQAKQQQCGSLKHLCSEMQERKAL 663 (953)
Q Consensus 584 ~~~~~~~~l~~~~~k~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~ 663 (953)
-...+..+++-++.+++.+++++ +++++ .+++.+....++.-+++..+|...+.+.+++..-
T Consensus 60 qv~~~e~ei~~~r~r~~~~e~kl-~~v~~-----------------~~e~~aL~~E~~~ak~r~~~le~el~~l~~~~~~ 121 (239)
T COG1579 60 QVSQLESEIQEIRERIKRAEEKL-SAVKD-----------------ERELRALNIEIQIAKERINSLEDELAELMEEIEK 121 (239)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH-hcccc-----------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45567778899999999999999 66666 3555666677778888889999999999999988
Q ss_pred HHhHHHhhhhhcccccchhhHHHHHHHhhhhccccchhhhhhhHhhhHhHhHhhHHHHHHhhhhhhhHHHHHHhHHHHHh
Q 002212 664 VDNKLMALKYSLSSFSSSAAYFEQRAARSRARVTTSSTYLNQKKEQLVHLECCKREIEDALGKVQRSEAELRNNLALLKS 743 (953)
Q Consensus 664 ~~~k~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~l~~l~~~k~~~~~~~~~~~~~e~e~~~~~~~~k~ 743 (953)
+.++..+|+=++.+--. .+-..+..++.+...+.+-=..+.+..+.|++
T Consensus 122 l~~~i~~l~~~~~~~e~-------------------------------~~~e~~~~~e~e~~~i~e~~~~~~~~~~~L~~ 170 (239)
T COG1579 122 LEKEIEDLKERLERLEK-------------------------------NLAEAEARLEEEVAEIREEGQELSSKREELKE 170 (239)
T ss_pred HHHHHHHHHHHHHHHHH-------------------------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 88888666544433211 12223445556666666666677788888888
Q ss_pred HhHH
Q 002212 744 KLEE 747 (953)
Q Consensus 744 k~~~ 747 (953)
++..
T Consensus 171 ~l~~ 174 (239)
T COG1579 171 KLDP 174 (239)
T ss_pred hcCH
Confidence 8865
No 91
>PF01576 Myosin_tail_1: Myosin tail; InterPro: IPR002928 Muscle contraction is caused by sliding between the thick and thin filaments of the myofibril. Myosin is a major component of thick filaments and exists as a hexamer of 2 heavy chains [], 2 alkali light chains, and 2 regulatory light chains. The heavy chain can be subdivided into the N-terminal globular head and the C-terminal coiled-coil rod-like tail, although some forms have a globular region in their C-terminal. There are many cell-specific isoforms of myosin heavy chains, coded for by a multi-gene family []. Myosin interacts with actin to convert chemical energy, in the form of ATP, to mechanical energy []. The 3-D structure of the head portion of myosin has been determined [] and a model for actin-myosin complex has been constructed []. This family consists of the coiled-coil myosin heavy chain tail region. The coiled-coil is composed of the tail from two molecules of myosin. These can then assemble into the macromolecular thick filament []. The coiled-coil region provides the structural backbone of the thick filament [].; GO: 0003774 motor activity, 0016459 myosin complex; PDB: 2LNK_C 3ZWH_Q.
Probab=85.21 E-value=0.27 Score=61.37 Aligned_cols=60 Identities=17% Similarity=0.241 Sum_probs=0.0
Q ss_pred HhhhhhhHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHhhHHHHHhhhHHHHHHHHhhhc
Q 002212 489 EEKSNLIELYERKEMEMKREAENLELQLAEMNEENEKLLGLYEKAMQERDEFKRMISLCG 548 (953)
Q Consensus 489 e~~~~l~~~~~~~~~~~~~~~~~L~~ql~e~~~en~kl~~lye~am~e~d~~~r~~~~~~ 548 (953)
++-...+....+...-+..++.++..++++-+.....|-+-...+=++.+.|+-.+-...
T Consensus 225 ee~e~~~~~l~r~k~~L~~qLeelk~~leeEtr~k~~L~~~l~~le~e~~~L~eqleeE~ 284 (859)
T PF01576_consen 225 EEAESQLSQLQREKSSLESQLEELKRQLEEETRAKQALEKQLRQLEHELEQLREQLEEEE 284 (859)
T ss_dssp ------------------------------------------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhHHHHHhHhhhhhhhHHHHHHHHHHHHHHHHHHhhhh
Confidence 344444444455566666777777777777777777777766666666666666665433
No 92
>TIGR03185 DNA_S_dndD DNA sulfur modification protein DndD. This model describes the DndB protein encoded by an operon associated with a sulfur-containing modification to DNA. The operon is sporadically distributed in bacteria, much like some restriction enzyme operons. DndD is described as a putative ATPase. The small number of examples known so far include species from among the Firmicutes, Actinomycetes, Proteobacteria, and Cyanobacteria.
Probab=84.42 E-value=1.1e+02 Score=37.48 Aligned_cols=61 Identities=16% Similarity=0.203 Sum_probs=41.5
Q ss_pred hHHHHHHHhhhhhhhHHHhhhhhhhhccch--hhHHHHHHHHHhhhhhHHHHHHHHHHHHHHH
Q 002212 793 LQTELKLCRERLGVVKREFEDLTKKSWKID--SDLQTVQMEIQKSSRSVEEMELAHQAVLQEQ 853 (953)
Q Consensus 793 l~~e~k~~~e~l~~~~~e~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~ 853 (953)
.+..+..++.++..+..|++.++++...++ ..|+.+..++...-+.+.+.+.++...-++-
T Consensus 389 ~~~~~~~~~~~~~~~e~el~~l~~~l~~~~~~e~i~~l~e~l~~l~~~l~~~~~~~~~~~~~~ 451 (650)
T TIGR03185 389 LQDAKSQLLKELRELEEELAEVDKKISTIPSEEQIAQLLEELGEAQNELFRSEAEIEELLRQL 451 (650)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 467888888888889999998888876653 3566666666666665655555554444333
No 93
>KOG0933 consensus Structural maintenance of chromosome protein 2 (chromosome condensation complex Condensin, subunit E) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=83.81 E-value=1.5e+02 Score=38.68 Aligned_cols=53 Identities=21% Similarity=0.156 Sum_probs=39.1
Q ss_pred HHHHHHHHHHHHHHhhhhhhhh--hhhhhHHHHhhhHhhhhhhhHhhhhhHHHHH
Q 002212 592 LNLVRLKLEKAQEKLSDSANTI--TLFGSVEKAFAEVDKLSGDIVAMEDSIQAKQ 644 (953)
Q Consensus 592 l~~~~~k~~~~~~~~~~~~~~~--~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~ 644 (953)
..-+|.+|...+++...--+|| ..+..||.+=.++-+|-..+.-++.|----+
T Consensus 960 p~~are~l~~Lq~k~~~l~k~vn~~~m~mle~~E~~~~~lk~k~~~Ie~Dk~kI~ 1014 (1174)
T KOG0933|consen 960 PHEAREELKKLQEKKEKLEKTVNPKNMDMLERAEEKEAALKTKKEIIEKDKSKIK 1014 (1174)
T ss_pred HhHHHHHHHHhhHHHHHHHhhcCHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHH
Confidence 3457788888888888777765 5688888888888888888777776644433
No 94
>PRK11637 AmiB activator; Provisional
Probab=82.68 E-value=1e+02 Score=35.77 Aligned_cols=73 Identities=8% Similarity=0.230 Sum_probs=30.2
Q ss_pred hhhhHHHHHHHHHHHHHHhhhhhhhhh-hhhhHHHHhhhHhhhhhhhHhhhhhHHHHHHhhhhhhHHhhHHHHh
Q 002212 588 VTEDLNLVRLKLEKAQEKLSDSANTIT-LFGSVEKAFAEVDKLSGDIVAMEDSIQAKQQQCGSLKHLCSEMQER 660 (953)
Q Consensus 588 ~~~~l~~~~~k~~~~~~~~~~~~~~~~-~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 660 (953)
....|+-++.+++..+.++.+..+-+. ...-++..-.++..+...|...+..+...+.++..++..+.+.+.+
T Consensus 45 ~~~~l~~l~~qi~~~~~~i~~~~~~~~~~~~~l~~l~~qi~~~~~~i~~~~~~i~~~~~ei~~l~~eI~~~q~~ 118 (428)
T PRK11637 45 NRDQLKSIQQDIAAKEKSVRQQQQQRASLLAQLKKQEEAISQASRKLRETQNTLNQLNKQIDELNASIAKLEQQ 118 (428)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344455555555555554443332221 1122222223333344444444444444444444444444444443
No 95
>COG4942 Membrane-bound metallopeptidase [Cell division and chromosome partitioning]
Probab=82.64 E-value=1.1e+02 Score=36.28 Aligned_cols=52 Identities=19% Similarity=0.295 Sum_probs=44.4
Q ss_pred HHHHhhHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHhhccCchhhhhhhh
Q 002212 358 MQAIHNQAEMETLRKQLEFSLDEKEKLERHVSDLVKKLEEQTCPISAKEETQ 409 (953)
Q Consensus 358 ~~~~~~~~El~~~~k~l~~clEen~kl~r~i~~L~~el~~~~~~~~~~~~~~ 409 (953)
-++++++.||....+++...-.+.++|+.+|+++..++...+..+.++....
T Consensus 38 ~~l~q~q~ei~~~~~~i~~~~~~~~kL~~~lk~~e~~i~~~~~ql~~s~~~l 89 (420)
T COG4942 38 KQLKQIQKEIAALEKKIREQQDQRAKLEKQLKSLETEIASLEAQLIETADDL 89 (420)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHH
Confidence 3688999999999999999999999999999999999888777666555444
No 96
>KOG4643 consensus Uncharacterized coiled-coil protein [Function unknown]
Probab=82.13 E-value=1.8e+02 Score=38.17 Aligned_cols=17 Identities=29% Similarity=0.479 Sum_probs=13.4
Q ss_pred hhhhhhHHHHHHHHHHH
Q 002212 304 GGEREMMSQQIMVLQNK 320 (953)
Q Consensus 304 egERE~lleeIs~Lqd~ 320 (953)
..|.+||.+||+.++.+
T Consensus 277 leekeMLeeQLq~lrar 293 (1195)
T KOG4643|consen 277 LEEKEMLEEQLQKLRAR 293 (1195)
T ss_pred HHHHHHHHHHHHHHHhc
Confidence 34788888888888876
No 97
>PF06160 EzrA: Septation ring formation regulator, EzrA ; InterPro: IPR010379 During the bacterial cell cycle, the tubulin-like cell-division protein FtsZ polymerises into a ring structure that establishes the location of the nascent division site. EzrA modulates the frequency and position of FtsZ ring formation [].; GO: 0000921 septin ring assembly, 0005940 septin ring, 0016021 integral to membrane
Probab=81.68 E-value=1.3e+02 Score=36.43 Aligned_cols=55 Identities=36% Similarity=0.462 Sum_probs=43.0
Q ss_pred chhhhhhhHhhhHhHhHhhHHHHHHhhhhhhhHHHHHHhHHHHHhHhHHHhhhcc
Q 002212 699 SSTYLNQKKEQLVHLECCKREIEDALGKVQRSEAELRNNLALLKSKLEEENRRQE 753 (953)
Q Consensus 699 ~~~~~~~k~~~l~~l~~~k~~~~~~~~~~~~~e~e~~~~~~~~k~k~~~e~~~~e 753 (953)
....+..-.++|..+..-..++...+..++.-|.+-|..+..++.+|..=-|+-+
T Consensus 377 i~~~l~~~~~~l~~ie~~q~~~~~~l~~L~~dE~~Ar~~l~~~~~~l~~ikR~le 431 (560)
T PF06160_consen 377 IQEELEEIEEQLEEIEEEQEEINESLQSLRKDEKEAREKLQKLKQKLREIKRRLE 431 (560)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445556667777777777888888889999999999999999999988555533
No 98
>PF05701 WEMBL: Weak chloroplast movement under blue light; InterPro: IPR008545 This family consists of several plant proteins of unknown function. Several sequences in this family are described as being myosin heavy chain-like.
Probab=80.90 E-value=1.4e+02 Score=36.06 Aligned_cols=122 Identities=25% Similarity=0.268 Sum_probs=79.6
Q ss_pred HHHHHHhhhhhhhHHHhhhhhhhhccchhhHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHhchhhHHHHHHHH
Q 002212 795 TELKLCRERLGVVKREFEDLTKKSWKIDSDLQTVQMEIQKSSRSVEEMELAHQAVLQEQEALLEIREKGKTEIESMILEY 874 (953)
Q Consensus 795 ~e~k~~~e~l~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~ 874 (953)
.++...|++.++..-.+.+|+-+...+-++|.++..+-.++-....++...|+.+-.+.+..-...+.-..|+..+--++
T Consensus 323 ~el~~lke~e~~a~~~v~~L~~eL~~~r~eLea~~~~e~~~k~~~~~l~~~Lqql~~Eae~Ak~ea~~~~~E~~~~k~E~ 402 (522)
T PF05701_consen 323 EELERLKEREKEASSEVSSLEAELNKTRSELEAAKAEEEKAKEAMSELPKALQQLSSEAEEAKKEAEEAKEEVEKAKEEA 402 (522)
T ss_pred HHHHHHHHHHHHHHhHHhhHHHHHHHHHHHHHHHHhhhcchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44555555555555555555555555555666666666666666667777777777777666555555555666665555
Q ss_pred hhhhhhhhhhHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhhhhc
Q 002212 875 MQHVFEADLKEAEMRIVEEELQLELRRMDELRVLRAAAAEKKAQLLEHT 923 (953)
Q Consensus 875 ~~~~f~~~l~~~e~~~~~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 923 (953)
.+ -.+.+..++.-|+.-...++..++.-..|...+.-+-.+.
T Consensus 403 e~-------~ka~i~t~E~rL~aa~ke~eaaKasEa~Ala~ik~l~e~~ 444 (522)
T PF05701_consen 403 EQ-------TKAAIKTAEERLEAALKEAEAAKASEALALAEIKALSESE 444 (522)
T ss_pred HH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccc
Confidence 44 3566777777788888888888888888888877765544
No 99
>PF09789 DUF2353: Uncharacterized coiled-coil protein (DUF2353); InterPro: IPR019179 Members of this family have been annotated as being coiled-coil domain-containing protein 149, however they currently have no known function.
Probab=80.80 E-value=90 Score=35.84 Aligned_cols=61 Identities=20% Similarity=0.155 Sum_probs=38.2
Q ss_pred hhhhhhHHHHHHHHHHHHHHHhhHhhhccCCccccCCCCCCCcccchhhhHHHHHHHHhhHHHHHHHHHHhh
Q 002212 304 GGEREMMSQQIMVLQNKLLEALDWKLMHESDSSAVQEPGSPWRTSVNEENEFLRMQAIHNQAEMETLRKQLE 375 (953)
Q Consensus 304 egERE~lleeIs~Lqd~Lle~ld~k~~~e~~~v~~~~~~~~~~~s~~~Ene~Lr~~~~~~~~El~~~~k~l~ 375 (953)
-.||..+-..+.-|...|-..|... ...+. --..+-.||.+|+.++.+.+.|.+.+..+++
T Consensus 160 ~~ERD~yk~K~~RLN~ELn~~L~g~----------~~riv-DIDaLi~ENRyL~erl~q~qeE~~l~k~~i~ 220 (319)
T PF09789_consen 160 VTERDAYKCKAHRLNHELNYILNGD----------ENRIV-DIDALIMENRYLKERLKQLQEEKELLKQTIN 220 (319)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhCCC----------CCCcc-cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3477777777777777765555443 11110 1122558999999888888777777766554
No 100
>KOG1003 consensus Actin filament-coating protein tropomyosin [Cytoskeleton]
Probab=80.75 E-value=89 Score=33.85 Aligned_cols=151 Identities=19% Similarity=0.258 Sum_probs=116.2
Q ss_pred hhhhhhhhHHHHHHHHHHHHHHhhhhhhhhhhhhhHHHHhhhHhhhhhhhHhhhhhHHHHHHhhhhhhHHhhHHHHhHHH
Q 002212 584 ANIKVTEDLNLVRLKLEKAQEKLSDSANTITLFGSVEKAFAEVDKLSGDIVAMEDSIQAKQQQCGSLKHLCSEMQERKAL 663 (953)
Q Consensus 584 ~~~~~~~~l~~~~~k~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~ 663 (953)
.++++..-++++..-|+++++++.++ ..-|+.|--.+|+=-+-+.+++...+.....|+.+...+++++-.-.-
T Consensus 5 ~va~lnrri~~leeele~aqErl~~a------~~KL~Eaeq~~dE~er~~Kv~enr~~kdEE~~e~~e~qLkEAk~iaE~ 78 (205)
T KOG1003|consen 5 DVAALNRRIQLLEEELDRAQERLATA------LQKLEEAEQAADESERGMKVIENRAQKLEEKMEAQEAQLKEAKHIAEK 78 (205)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHhhcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHH
Confidence 34566777888888888888888776 444677777788888999999999999999999999999999999999
Q ss_pred HHhHHHhhhhhcccccchhhHHHHHHHhhhhccccchhhhhhhHhhhHhHhHhhHHHHHHhhhhhhhHHHHHHhHHHHHh
Q 002212 664 VDNKLMALKYSLSSFSSSAAYFEQRAARSRARVTTSSTYLNQKKEQLVHLECCKREIEDALGKVQRSEAELRNNLALLKS 743 (953)
Q Consensus 664 ~~~k~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~l~~l~~~k~~~~~~~~~~~~~e~e~~~~~~~~k~ 743 (953)
.|.||--.-|+|. .-+..=.+|.-|.-+.-+-+-+--+++.++..--.-+++.-.+.-+.+-.....|-.+-.
T Consensus 79 adrK~eEVarkL~-------iiE~dLE~~eeraE~~Es~~~eLeEe~~~~~~nlk~l~~~ee~~~q~~d~~e~~ik~ltd 151 (205)
T KOG1003|consen 79 ADRKYEEVARKLV-------IIEGELERAEERAEAAESQSEELEEDLRILDSNLKSLSAKEEKLEQKEEKYEEELKELTD 151 (205)
T ss_pred HHHHHHHHHHHHH-------HHHhHHHHHHHHHHHHHHHHHHHHHHHHHhHhHHHHHHHHHHHHhhhHHHHHHHHHHHHH
Confidence 9999977766664 333343444444555566667777888888777777777777777777777777777777
Q ss_pred HhHH
Q 002212 744 KLEE 747 (953)
Q Consensus 744 k~~~ 747 (953)
||.+
T Consensus 152 KLkE 155 (205)
T KOG1003|consen 152 KLKE 155 (205)
T ss_pred HHhh
Confidence 7776
No 101
>PF05483 SCP-1: Synaptonemal complex protein 1 (SCP-1); InterPro: IPR008827 Synaptonemal complex protein 1 (SCP-1) is the major component of the transverse filaments of the synaptonemal complex. Synaptonemal complexes are structures that are formed between homologous chromosomes during meiotic prophase [].; GO: 0007130 synaptonemal complex assembly, 0000795 synaptonemal complex
Probab=80.37 E-value=1.7e+02 Score=36.86 Aligned_cols=118 Identities=22% Similarity=0.275 Sum_probs=79.8
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHhhHHHHHhhhHHHHHHHHhhhcCCccccccccccccchhhccccc
Q 002212 492 SNLIELYERKEMEMKREAENLELQLAEMNEENEKLLGLYEKAMQERDEFKRMISLCGQNRAEASGEIYCPEKLVEIDGEA 571 (953)
Q Consensus 492 ~~l~~~~~~~~~~~~~~~~~L~~ql~e~~~en~kl~~lye~am~e~d~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 571 (953)
.+-++.|+.+++.++..|++-.+...++..+|.-|. ..+.-
T Consensus 586 ~kq~k~lenk~~~LrKqvEnk~K~ieeLqqeNk~LK--------------Kk~~a------------------------- 626 (786)
T PF05483_consen 586 EKQMKILENKCNNLRKQVENKNKNIEELQQENKALK--------------KKITA------------------------- 626 (786)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHH--------------HHHHH-------------------------
Confidence 377889999999999999999999999999998765 11110
Q ss_pred cccccchhhhchhhhhhhhhHHHHHHHHHHHHHHhhh-----hhhhhhhhhhHHHHhhhHhhhhhhhHhhhhhHHHHHHh
Q 002212 572 AFADMETEQLNLANIKVTEDLNLVRLKLEKAQEKLSD-----SANTITLFGSVEKAFAEVDKLSGDIVAMEDSIQAKQQQ 646 (953)
Q Consensus 572 ~~~~~~~~~~~~~~~~~~~~l~~~~~k~~~~~~~~~~-----~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~ 646 (953)
......+.++.+.++.+++.-++.+.+...+++.. +.-+-.++|-++++-+-+|+--.--..++..-|+|--+
T Consensus 627 --E~kq~~~~eikVn~L~~E~e~~kk~~eE~~~~~~keie~K~~~e~~L~~EveK~k~~a~EAvK~q~EtdlrCQhKIAe 704 (786)
T PF05483_consen 627 --ESKQSNVYEIKVNKLQEELENLKKKHEEETDKYQKEIESKSISEEELLGEVEKAKLTADEAVKLQEETDLRCQHKIAE 704 (786)
T ss_pred --HHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHH
Confidence 00112234455666666676666666655554432 23334567778888888887777777777777777766
Q ss_pred hhhh
Q 002212 647 CGSL 650 (953)
Q Consensus 647 ~~~l 650 (953)
|-+|
T Consensus 705 MVAL 708 (786)
T PF05483_consen 705 MVAL 708 (786)
T ss_pred HHHH
Confidence 6554
No 102
>KOG0978 consensus E3 ubiquitin ligase involved in syntaxin degradation [Posttranslational modification, protein turnover, chaperones]
Probab=79.74 E-value=1.8e+02 Score=36.72 Aligned_cols=166 Identities=19% Similarity=0.175 Sum_probs=98.2
Q ss_pred HHHHHHHHHHHHHHHHHHhHHHHHHHhhHHHH-------HhhhHHHHHHHHhhhcCCccccccccccccchhhccccccc
Q 002212 501 KEMEMKREAENLELQLAEMNEENEKLLGLYEK-------AMQERDEFKRMISLCGQNRAEASGEIYCPEKLVEIDGEAAF 573 (953)
Q Consensus 501 ~~~~~~~~~~~L~~ql~e~~~en~kl~~lye~-------am~e~d~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 573 (953)
+..++..+...|-.|+.+-...|=|||.==.+ ++.+++.+--.+.-.... ..+++-+=| .
T Consensus 462 A~ed~Qeqn~kL~~el~ekdd~nfklm~e~~~~~q~~k~L~~ek~~l~~~i~~l~~~----------~~~~~~~i~---~ 528 (698)
T KOG0978|consen 462 AFEDMQEQNQKLLQELREKDDKNFKLMSERIKANQKHKLLREEKSKLEEQILTLKAS----------VDKLELKIG---K 528 (698)
T ss_pred HHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----------HHHHHHHHH---H
Confidence 55778999999999999999999999963333 344444443333221111 000000000 0
Q ss_pred cccchhhhchhhhhhhhhHHHHHHHHHHHHHHhhhhhhhhhhhhhHHHHhhhHhhhhhhhHhhhhhHHHHHHhhhhhhHH
Q 002212 574 ADMETEQLNLANIKVTEDLNLVRLKLEKAQEKLSDSANTITLFGSVEKAFAEVDKLSGDIVAMEDSIQAKQQQCGSLKHL 653 (953)
Q Consensus 574 ~~~~~~~~~~~~~~~~~~l~~~~~k~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 653 (953)
-.+....+-.....+..++..-..+++.-.-+..++ -..++...++.++.-+....+.......--.+.-++--
T Consensus 529 leeq~~~lt~~~~~l~~el~~~~~~le~~kk~~~e~------~~~~~~Lq~~~ek~~~~le~i~~~~~e~~~ele~~~~k 602 (698)
T KOG0978|consen 529 LEEQERGLTSNESKLIKELTTLTQSLEMLKKKAQEA------KQSLEDLQIELEKSEAKLEQIQEQYAELELELEIEKFK 602 (698)
T ss_pred HHHHHHHhhHhhhhhHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 000011122233344455555555555554444444 55667777777777777777777777777777777777
Q ss_pred hhHHHHhHHHHHhHHHhhhhhcccccchhhHHH
Q 002212 654 CSEMQERKALVDNKLMALKYSLSSFSSSAAYFE 686 (953)
Q Consensus 654 ~~~~~~~~~~~~~k~~~~~~~~~~f~~~~~~~~ 686 (953)
.+.+++--+-+.+||+.++-.-+ ..++-.|-.
T Consensus 603 ~~rleEE~e~L~~kle~~k~~~~-~~s~d~~L~ 634 (698)
T KOG0978|consen 603 RKRLEEELERLKRKLERLKKEES-GASADEVLA 634 (698)
T ss_pred HHHHHHHHHHHHHHHHHhccccc-cccccHHHH
Confidence 78888888888899988876544 334444443
No 103
>KOG1029 consensus Endocytic adaptor protein intersectin [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=79.55 E-value=1.9e+02 Score=36.98 Aligned_cols=26 Identities=19% Similarity=0.374 Sum_probs=14.5
Q ss_pred cccceeeEeeccccccCCcccccccc
Q 002212 752 QENEKVLFAIDNIEKVDHPQRNWNLG 777 (953)
Q Consensus 752 ~e~e~vl~~idn~~~~~~~~~~~~~~ 777 (953)
++.+..=|+--.+-+|---+-.|-+|
T Consensus 825 kke~dLsFskgd~I~VlekqemwW~G 850 (1118)
T KOG1029|consen 825 KKENDLSFSKGDTITVLEKQEMWWFG 850 (1118)
T ss_pred cccccccccCCCeeeeehhccceecc
Confidence 33445556655555555556666554
No 104
>PF05276 SH3BP5: SH3 domain-binding protein 5 (SH3BP5); InterPro: IPR007940 The SH3 domain-binding protein inhibits the auto and transphophorylation of BTK and acts as a negative regulator of BTK-related signalling in B cells.
Probab=78.43 E-value=1.1e+02 Score=33.67 Aligned_cols=191 Identities=23% Similarity=0.291 Sum_probs=107.5
Q ss_pred hhHHHHHHHHhhhhhhhhccHHHHHHH----HHHHHhhhhhhHHHHH---HHHHHHHHHHHHHHHHHHhHHHHHHHhhHH
Q 002212 458 ELRLELEVLNKEKSEFNKLNDELQLKH----KVLIEEKSNLIELYER---KEMEMKREAENLELQLAEMNEENEKLLGLY 530 (953)
Q Consensus 458 ~~~~~~e~~~~~~~e~~~ln~e~~~~~----~~l~e~~~~l~~~~~~---~~~~~~~~~~~L~~ql~e~~~en~kl~~ly 530 (953)
.+..+||.+|.-..+.|+|-.+|+..- ..|-+...+|..+=.. -| +.-+=.=+......+.+.+=++--..|
T Consensus 8 rVq~eLe~LN~atd~IN~lE~~L~~ar~~fr~~l~e~~~kL~~~~kkLg~~I-~karPYyea~~~a~~aq~e~q~Aa~~y 86 (239)
T PF05276_consen 8 RVQEELEKLNQATDEINRLENELDEARATFRRLLSESTKKLNELAKKLGSCI-EKARPYYEARRKAKEAQQEAQKAALQY 86 (239)
T ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHhchHHHHHHHHHHHHHHHHHHHHHH
Confidence 467799999999999999998887765 3444554444443111 12 112223344455566677777888899
Q ss_pred HHHhhhHHHHHHHHhhhcCCccccccccccccchhhccccccccccchhhhchhhhhh-----------------hhhHH
Q 002212 531 EKAMQERDEFKRMISLCGQNRAEASGEIYCPEKLVEIDGEAAFADMETEQLNLANIKV-----------------TEDLN 593 (953)
Q Consensus 531 e~am~e~d~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----------------~~~l~ 593 (953)
|+|---=.--|.+++--.++ ... +++-..+..-.+.+|-++..+ +..++
T Consensus 87 erA~~~h~aAKe~v~laEq~-l~~-------------~~~~~~D~~wqEmLn~A~~kVneAE~ek~~ae~eH~~~~~~~~ 152 (239)
T PF05276_consen 87 ERANSMHAAAKEMVALAEQS-LMS-------------DSNWTFDPAWQEMLNHATQKVNEAEQEKTRAEREHQRRARIYN 152 (239)
T ss_pred HHHHHHHHHHHHHHHHHHHH-Hhc-------------CCcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99987777788888765444 111 111111222223333333333 23334
Q ss_pred HHHHHHHHHHHHhhhh-hhhhhhhhhHHHHhhhHhhhhhhhHhhhhhHHHHHH----hhhhhhHHhhHHHHhHHH
Q 002212 594 LVRLKLEKAQEKLSDS-ANTITLFGSVEKAFAEVDKLSGDIVAMEDSIQAKQQ----QCGSLKHLCSEMQERKAL 663 (953)
Q Consensus 594 ~~~~k~~~~~~~~~~~-~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~l~~~~~~~~~~~~~ 663 (953)
.+-.++-..+.++-.+ .|+=+||..=..--.........|..++.++..... -+..|...|.++|++|-.
T Consensus 153 ~ae~~v~~Lek~lkr~I~KSrPYfe~K~~~~~~l~~~k~~v~~Le~~v~~aK~~Y~~ALrnLE~ISeeIH~~R~~ 227 (239)
T PF05276_consen 153 EAEQRVQQLEKKLKRAIKKSRPYFELKAKFNQQLEEQKEKVEELEAKVKQAKSRYSEALRNLEQISEEIHEQRRR 227 (239)
T ss_pred HHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 4444444444444332 356667765444444555555555555555554433 466788888888888753
No 105
>PF15070 GOLGA2L5: Putative golgin subfamily A member 2-like protein 5
Probab=78.31 E-value=1.8e+02 Score=36.05 Aligned_cols=104 Identities=21% Similarity=0.285 Sum_probs=60.0
Q ss_pred HHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHhhHhhhccCCccccCCCCCCCcccchhhh-HHHHHHHHhhHHH
Q 002212 288 LKEKEECLKEIESFYEGGEREMMSQQIMVLQNKLLEALDWKLMHESDSSAVQEPGSPWRTSVNEEN-EFLRMQAIHNQAE 366 (953)
Q Consensus 288 l~Ene~L~eEIq~LqeegERE~lleeIs~Lqd~Lle~ld~k~~~e~~~v~~~~~~~~~~~s~~~En-e~Lr~~~~~~~~E 366 (953)
...+..+.+++..|.+ |++.....|+.|..+|-+. ...+.... .+..+....+- ..|+.++.+.+.|
T Consensus 28 qqr~~qmseev~~L~e--Ek~~~~~~V~eLE~sL~eL-k~q~~~~~---------~~~~pa~pse~E~~Lq~E~~~L~kE 95 (617)
T PF15070_consen 28 QQRMQQMSEEVRTLKE--EKEHDISRVQELERSLSEL-KNQMAEPP---------PPEPPAGPSEVEQQLQAEAEHLRKE 95 (617)
T ss_pred HHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHH-HHhhcccC---------CccccccchHHHHHHHHHHHHHHHH
Confidence 3444555566665543 3344445677777776552 22222111 22222222222 3577777777889
Q ss_pred HHHHHHHhhhhHHHHHHHHHHHHHHHHHHhhccCchh
Q 002212 367 METLRKQLEFSLDEKEKLERHVSDLVKKLEEQTCPIS 403 (953)
Q Consensus 367 l~~~~k~l~~clEen~kl~r~i~~L~~el~~~~~~~~ 403 (953)
++.+..++.+=.++|..|.+-+......|.++...+.
T Consensus 96 lE~L~~qlqaqv~~ne~Ls~L~~EqEerL~ELE~~le 132 (617)
T PF15070_consen 96 LESLEEQLQAQVENNEQLSRLNQEQEERLAELEEELE 132 (617)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999988888888888887766665555555544443
No 106
>PF05667 DUF812: Protein of unknown function (DUF812); InterPro: IPR008530 This family consists of several eukaryotic proteins of unknown function.
Probab=78.23 E-value=1.8e+02 Score=35.94 Aligned_cols=39 Identities=26% Similarity=0.328 Sum_probs=18.0
Q ss_pred HHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHhhccCch
Q 002212 364 QAEMETLRKQLEFSLDEKEKLERHVSDLVKKLEEQTCPI 402 (953)
Q Consensus 364 ~~El~~~~k~l~~clEen~kl~r~i~~L~~el~~~~~~~ 402 (953)
..|++.+.+.+..-......+...++.++.++.+..+..
T Consensus 327 ~~el~~l~~~l~~l~~~i~~~~~~~~~l~~~~~q~~~e~ 365 (594)
T PF05667_consen 327 EQELEELQEQLDELESQIEELEAEIKMLKSSLKQLEEEL 365 (594)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444444444444444444444444444444443333
No 107
>PF09789 DUF2353: Uncharacterized coiled-coil protein (DUF2353); InterPro: IPR019179 Members of this family have been annotated as being coiled-coil domain-containing protein 149, however they currently have no known function.
Probab=76.37 E-value=1.5e+02 Score=34.08 Aligned_cols=60 Identities=17% Similarity=0.215 Sum_probs=41.8
Q ss_pred HHHHhhhHhhhhhhhHhhhhhHHHHHHhhhhhhHHhhHHHHhHHHHHh--HHHhhhhh---cccccch
Q 002212 619 VEKAFAEVDKLSGDIVAMEDSIQAKQQQCGSLKHLCSEMQERKALVDN--KLMALKYS---LSSFSSS 681 (953)
Q Consensus 619 ~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~--k~~~~~~~---~~~f~~~ 681 (953)
=+.-+++||.|-.|..-.-..+...|.+.+.++.-++.- |+++|. +-+..|+. .++|.+.
T Consensus 184 ~~~rivDIDaLi~ENRyL~erl~q~qeE~~l~k~~i~KY---K~~le~k~~~~~~k~~~~~~~~~~~v 248 (319)
T PF09789_consen 184 DENRIVDIDALIMENRYLKERLKQLQEEKELLKQTINKY---KSALERKRKKGIIKLGNSASSNLTGV 248 (319)
T ss_pred CCCCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHhhccccccccCCCCCCccccc
Confidence 345678888888888888888999999988888777654 567773 33344544 4445443
No 108
>PRK04778 septation ring formation regulator EzrA; Provisional
Probab=73.74 E-value=2.2e+02 Score=34.62 Aligned_cols=162 Identities=17% Similarity=0.196 Sum_probs=90.4
Q ss_pred CCCCCCCcccchhhhHHHHHHHHhhHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHhhccCchhhhhhhhcccccCCCc
Q 002212 339 QEPGSPWRTSVNEENEFLRMQAIHNQAEMETLRKQLEFSLDEKEKLERHVSDLVKKLEEQTCPISAKEETQGFQLSTNVP 418 (953)
Q Consensus 339 ~~~~~~~~~s~~~Ene~Lr~~~~~~~~El~~~~k~l~~clEen~kl~r~i~~L~~el~~~~~~~~~~~~~~~~~~~~~~~ 418 (953)
.+++.....++..+-..++-++..+..-|..+ .+....+.+..+..+|+.|-.-++....+..+.+... .. .+
T Consensus 244 ~~gy~~~~~~i~~~i~~l~~~i~~~~~~l~~l--~l~~~~~~~~~i~~~Id~Lyd~lekE~~A~~~vek~~-~~----l~ 316 (569)
T PRK04778 244 EEGYHLDHLDIEKEIQDLKEQIDENLALLEEL--DLDEAEEKNEEIQERIDQLYDILEREVKARKYVEKNS-DT----LP 316 (569)
T ss_pred HcCCCCCCCChHHHHHHHHHHHHHHHHHHHhc--ChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh-HH----HH
Confidence 45555555667777777776666655555555 5777888899999999999999999888887766655 11 11
Q ss_pred cccchhhHHHHHHHHHHHHhhhhHHHhhhhhhhccccchhhHHHHHHHHhhhhhhhhccHHHHHHHHHHHHhhhhhhHHH
Q 002212 419 TINFDDQVELKTMVDAIAVASQREAEAHQTAIGLSKMHDELRLELEVLNKEKSEFNKLNDELQLKHKVLIEEKSNLIELY 498 (953)
Q Consensus 419 ~~~~~~q~e~kt~v~aia~asq~~~e~~~~~i~l~k~~~~~~~~~e~~~~~~~e~~~ln~e~~~~~~~l~e~~~~l~~~~ 498 (953)
.+.-..+...+++...|+.. .....|.-+ +++..+..+.+...++..+..-...+-+.... .+..
T Consensus 317 ~~l~~~~e~~~~l~~Ei~~l--------~~sY~l~~~------e~~~~~~lekeL~~Le~~~~~~~~~i~~~~~~-ysel 381 (569)
T PRK04778 317 DFLEHAKEQNKELKEEIDRV--------KQSYTLNES------ELESVRQLEKQLESLEKQYDEITERIAEQEIA-YSEL 381 (569)
T ss_pred HHHHHHHHHHHHHHHHHHHH--------HHccccCch------hHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCC-HHHH
Confidence 11111222233333333333 334445445 56666666667776666665433332222222 3333
Q ss_pred HHHHHHHHHHHHHHHHHHHHhHHH
Q 002212 499 ERKEMEMKREAENLELQLAEMNEE 522 (953)
Q Consensus 499 ~~~~~~~~~~~~~L~~ql~e~~~e 522 (953)
+....++..++.+++.+..++.+.
T Consensus 382 ~e~leel~e~leeie~eq~ei~e~ 405 (569)
T PRK04778 382 QEELEEILKQLEEIEKEQEKLSEM 405 (569)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444444444444444444433
No 109
>PF13851 GAS: Growth-arrest specific micro-tubule binding
Probab=73.54 E-value=1.3e+02 Score=32.01 Aligned_cols=70 Identities=33% Similarity=0.376 Sum_probs=51.9
Q ss_pred cHHHHHHHHHHHHhhhhh---hHHHHH---HHHHHHHHHHHHHHHHHHhHHHHHHHhhHHHHHhhhHHHHHHHHhh
Q 002212 477 NDELQLKHKVLIEEKSNL---IELYER---KEMEMKREAENLELQLAEMNEENEKLLGLYEKAMQERDEFKRMISL 546 (953)
Q Consensus 477 n~e~~~~~~~l~e~~~~l---~~~~~~---~~~~~~~~~~~L~~ql~e~~~en~kl~~lye~am~e~d~~~r~~~~ 546 (953)
|..+..-|+.+.++...| ..-|++ .....+.++..++.++..+.-|++-|---|++.-+|||+|.+++-.
T Consensus 57 N~~L~epL~~a~~e~~eL~k~L~~y~kdK~~L~~~k~rl~~~ek~l~~Lk~e~evL~qr~~kle~ErdeL~~kf~~ 132 (201)
T PF13851_consen 57 NKRLSEPLKKAEEEVEELRKQLKNYEKDKQSLQNLKARLKELEKELKDLKWEHEVLEQRFEKLEQERDELYRKFES 132 (201)
T ss_pred HHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 555555555555544422 223443 3356778999999999999999999999999999999999999854
No 110
>KOG0250 consensus DNA repair protein RAD18 (SMC family protein) [Replication, recombination and repair]
Probab=72.89 E-value=3.2e+02 Score=36.15 Aligned_cols=108 Identities=28% Similarity=0.295 Sum_probs=73.4
Q ss_pred HhhhHhHhHhhHHHHHHhhhhhhhHHHHHHhHHHHHhHhHHHhhhcccceeeEeeccccccCCcccccccccchhhhhcc
Q 002212 707 KEQLVHLECCKREIEDALGKVQRSEAELRNNLALLKSKLEEENRRQENEKVLFAIDNIEKVDHPQRNWNLGGKATELLKS 786 (953)
Q Consensus 707 ~~~l~~l~~~k~~~~~~~~~~~~~e~e~~~~~~~~k~k~~~e~~~~e~e~vl~~idn~~~~~~~~~~~~~~gka~~llk~ 786 (953)
++++..|...+.|+.....+.+--|.+.+--=+.+|+.+...+ ..|.+++ |
T Consensus 786 ~~e~~~l~~l~~el~~r~dk~~s~e~~~~HyE~~~K~~l~~l~-~~E~~~~-----~----------------------- 836 (1074)
T KOG0250|consen 786 QGEISKLDALKEELKLREDKLRSAEDEKRHYEDKLKSRLEELK-QKEVEKV-----N----------------------- 836 (1074)
T ss_pred HHHHHHhhHHHHHHHHHHHHHhhhhhhhhhHHHHHHHhhHHHH-HHHHHHH-----h-----------------------
Confidence 4567777777777777777777777777766677776444433 2333332 1
Q ss_pred HHHHhhhHHHHHHHhhhhhhhHHHhhhhhhhhccchhhHHHHHHHHHhhhhhHHHHHHH
Q 002212 787 EEEKTKLQTELKLCRERLGVVKREFEDLTKKSWKIDSDLQTVQMEIQKSSRSVEEMELA 845 (953)
Q Consensus 787 ee~~~kl~~e~k~~~e~l~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~ 845 (953)
.+..++.++.+++.---....||..|.+-++.|+.+|+-+.+.|+.+..++.+++.-
T Consensus 837 --~e~~~~e~~~ka~~~cp~~~~ei~~~~~~~~eik~ei~rlk~~i~~~ee~~~~~~e~ 893 (1074)
T KOG0250|consen 837 --LEEPRAEEDQKARTECPEEGIEIEALGKTVAEIKREIKRLKRQIQMCEESLGELEEL 893 (1074)
T ss_pred --hhcchhhhCchhhhhCccccchhhcccchHHHHHHHHHHHHHHHHHHHHhcchHHHH
Confidence 123345555555555555557888988888899999999999999999888875443
No 111
>PF07926 TPR_MLP1_2: TPR/MLP1/MLP2-like protein; InterPro: IPR012929 This domain is found in a number of proteins, including TPR protein (P12270 from SWISSPROT) and yeast myosin-like proteins 1 (MLP1, Q02455 from SWISSPROT) and 2 (MLP2, P40457 from SWISSPROT). These proteins share a number of features; for example, they all have coiled-coil regions and all three are associated with nuclear pores [, , ]. TPR is thought to be a component of nuclear pore complex- attached intranuclear filaments [], and is implicated in nuclear protein import []. Moreover, its N-terminal region is involved in the activation of oncogenic kinases, possibly by mediating the dimerisation of kinase domains or by targeting these kinases to the nuclear pore complex []. MLP1 and MLP2 are involved in the process of telomere length regulation, where they are thought to interact with proteins such as Tel1p and modulate their activity []. ; GO: 0006606 protein import into nucleus, 0005643 nuclear pore
Probab=72.10 E-value=1.1e+02 Score=30.33 Aligned_cols=35 Identities=23% Similarity=0.316 Sum_probs=24.6
Q ss_pred HHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHhHHH
Q 002212 485 KVLIEEKSNLIELYERKEMEMKREAENLELQLAEMNEE 522 (953)
Q Consensus 485 ~~l~e~~~~l~~~~~~~~~~~~~~~~~L~~ql~e~~~e 522 (953)
+.-|+..+ ..|+..+.+++.++.+|..|+.=+|.-
T Consensus 93 e~sw~~qk---~~le~e~~~~~~r~~dL~~QN~lLh~Q 127 (132)
T PF07926_consen 93 EASWEEQK---EQLEKELSELEQRIEDLNEQNKLLHDQ 127 (132)
T ss_pred HHhHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33454443 566778888888888888888777753
No 112
>PF06160 EzrA: Septation ring formation regulator, EzrA ; InterPro: IPR010379 During the bacterial cell cycle, the tubulin-like cell-division protein FtsZ polymerises into a ring structure that establishes the location of the nascent division site. EzrA modulates the frequency and position of FtsZ ring formation [].; GO: 0000921 septin ring assembly, 0005940 septin ring, 0016021 integral to membrane
Probab=71.94 E-value=2.4e+02 Score=34.33 Aligned_cols=173 Identities=21% Similarity=0.234 Sum_probs=100.0
Q ss_pred CCCCCCCcccchhhhHHHHHHHHhhHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHhhccCchhhhhhhhcccccCCCc
Q 002212 339 QEPGSPWRTSVNEENEFLRMQAIHNQAEMETLRKQLEFSLDEKEKLERHVSDLVKKLEEQTCPISAKEETQGFQLSTNVP 418 (953)
Q Consensus 339 ~~~~~~~~~s~~~Ene~Lr~~~~~~~~El~~~~k~l~~clEen~kl~r~i~~L~~el~~~~~~~~~~~~~~~~~~~~~~~ 418 (953)
.+++.....++..+-..++-++.++..-|..+ .+..+-+.+..+..+|+.|-.-++..-.+..+.+...
T Consensus 240 ~~gy~l~~~~i~~~i~~i~~~l~~~~~~L~~l--~l~~~~~~~~~i~~~Id~lYd~le~E~~Ak~~V~~~~--------- 308 (560)
T PF06160_consen 240 EEGYYLEHLDIEEEIEQIEEQLEEALALLKNL--ELDEVEEENEEIEERIDQLYDILEKEVEAKKYVEKNL--------- 308 (560)
T ss_pred HCCCCCCCCCHHHHHHHHHHHHHHHHHHHHcC--CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhH---------
Confidence 44555555667777777776666666666555 6778888999999999999999988877776666555
Q ss_pred cccchhhHHHHHHHHHHHHhh---hhHHHhhhhhhhccccchhhHHHHHHHHhhhhhhhhccHHHHHHHHHHHHhhhhhh
Q 002212 419 TINFDDQVELKTMVDAIAVAS---QREAEAHQTAIGLSKMHDELRLELEVLNKEKSEFNKLNDELQLKHKVLIEEKSNLI 495 (953)
Q Consensus 419 ~~~~~~q~e~kt~v~aia~as---q~~~e~~~~~i~l~k~~~~~~~~~e~~~~~~~e~~~ln~e~~~~~~~l~e~~~~l~ 495 (953)
-.+...++.+...+ ..+.+--.....|.-+ +++..+..+.++..+...... +..-+.++.---
T Consensus 309 -------~~l~~~l~~~~~~~~~l~~e~~~v~~sY~L~~~------e~~~~~~l~~~l~~l~~~~~~-~~~~i~~~~~~y 374 (560)
T PF06160_consen 309 -------KELYEYLEHAKEQNKELKEELERVSQSYTLNHN------ELEIVRELEKQLKELEKRYED-LEERIEEQQVPY 374 (560)
T ss_pred -------HHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCch------HHHHHHHHHHHHHHHHHHHHH-HHHHHHcCCcCH
Confidence 11222222222221 3344444445555555 555555555555555544432 233444444333
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHhhHHHHHhhhHHH
Q 002212 496 ELYERKEMEMKREAENLELQLAEMNEENEKLLGLYEKAMQERDE 539 (953)
Q Consensus 496 ~~~~~~~~~~~~~~~~L~~ql~e~~~en~kl~~lye~am~e~d~ 539 (953)
+.......++..++..++.+..++ ++.|-+|+..-..-|+.
T Consensus 375 S~i~~~l~~~~~~l~~ie~~q~~~---~~~l~~L~~dE~~Ar~~ 415 (560)
T PF06160_consen 375 SEIQEELEEIEEQLEEIEEEQEEI---NESLQSLRKDEKEAREK 415 (560)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHH
Confidence 333344555666666666666666 44566666555555543
No 113
>PF12252 SidE: Dot/Icm substrate protein; InterPro: IPR021014 This entry represents bacterial proteins that are typically between 397 and 1543 amino acids in length including SidE protein in the Dot/Icm pathway of Legionella pneumophila bacteria. There is little literature describing the family.
Probab=71.11 E-value=3.5e+02 Score=35.93 Aligned_cols=172 Identities=18% Similarity=0.198 Sum_probs=94.0
Q ss_pred HHHHHHHhhcCCCchhhhHHHHHHHHHHHHHHHh-------------hhhhhhhHHHHHHHHHHHHHHHhhHhhhccCCc
Q 002212 269 GIKRLEAVASGKISAETHLLKEKEECLKEIESFY-------------EGGEREMMSQQIMVLQNKLLEALDWKLMHESDS 335 (953)
Q Consensus 269 kI~rLE~l~~g~~sae~~Ll~Ene~L~eEIq~Lq-------------eegERE~lleeIs~Lqd~Lle~ld~k~~~e~~~ 335 (953)
+|..||..-...++.=...+.--..|++||..|+ +=..=|.|.++|++++..|..++-.....++.
T Consensus 1111 rIt~LEk~k~~~l~~ikK~ia~lnnlqqElklLRnEK~Rmh~~~dkVDFSDIEkLE~qLq~~~~kL~dAyl~eitKqIs- 1189 (1439)
T PF12252_consen 1111 RITDLEKAKLDNLDSIKKAIANLNNLQQELKLLRNEKIRMHSGTDKVDFSDIEKLEKQLQVIHTKLYDAYLVEITKQIS- 1189 (1439)
T ss_pred HHHHHhccccccHHHHHHHHHHHHHHHHHHHHHHhHHHhhccCCCcccHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHH-
Confidence 5666665543333333445555677888999887 22344688888999999887766655333221
Q ss_pred cccCCCCCCCcccchhhhHHHHHHHHhhHHHHHHHHHHhhhhHHHHHHHHHH----------------HHHHHHHHhhcc
Q 002212 336 SAVQEPGSPWRTSVNEENEFLRMQAIHNQAEMETLRKQLEFSLDEKEKLERH----------------VSDLVKKLEEQT 399 (953)
Q Consensus 336 v~~~~~~~~~~~s~~~Ene~Lr~~~~~~~~El~~~~k~l~~clEen~kl~r~----------------i~~L~~el~~~~ 399 (953)
.|.-..-++..+|..+-+++..|+.+.+.|..+ |++|...|+..-
T Consensus 1190 -------------------aLe~e~PKnltdvK~missf~d~laeiE~LrnErIKkHGaSkePLDlSDlDkLk~~LQ~iN 1250 (1439)
T PF12252_consen 1190 -------------------ALEKEKPKNLTDVKSMISSFNDRLAEIEFLRNERIKKHGASKEPLDLSDLDKLKGQLQKIN 1250 (1439)
T ss_pred -------------------HHHhhCCCchhhHHHHHHHHHhhhhHHHHHHHHHhhccCCCCCccchhhHHHHHHHHHHHH
Confidence 222222334556777777777777776665443 455555555555
Q ss_pred Cchhhhh-hhhcccccCCCccccchhhHHHHHHHHHHHHhhhhHHHhhhh-hhhccccchhhHHHHHHHHhhhhhhhhcc
Q 002212 400 CPISAKE-ETQGFQLSTNVPTINFDDQVELKTMVDAIAVASQREAEAHQT-AIGLSKMHDELRLELEVLNKEKSEFNKLN 477 (953)
Q Consensus 400 ~~~~~~~-~~~~~~~~~~~~~~~~~~q~e~kt~v~aia~asq~~~e~~~~-~i~l~k~~~~~~~~~e~~~~~~~e~~~ln 477 (953)
+.++-.- ..+ -.+..||+.||.-..=..| |+-.+.-.+ +=.|++. ++-.|.+.++.|||
T Consensus 1251 Q~LV~~LIn~i----------R~slnqme~~tf~~q~~ei-q~n~~ll~~L~~tlD~S--------~~a~Kqk~di~kl~ 1311 (1439)
T PF12252_consen 1251 QNLVKALINTI----------RVSLNQMEVKTFEEQEKEI-QQNLQLLDKLEKTLDDS--------DTAQKQKEDIVKLN 1311 (1439)
T ss_pred HHHHHHHHHHH----------HHHHHHhhhhhhhhhhHHH-HHHHHHHHHHHHHhcch--------HHHHHHHHHHHHHH
Confidence 4443211 111 2455777777764322222 332222221 2233333 44566667777777
Q ss_pred HH
Q 002212 478 DE 479 (953)
Q Consensus 478 ~e 479 (953)
+-
T Consensus 1312 ~~ 1313 (1439)
T PF12252_consen 1312 DF 1313 (1439)
T ss_pred HH
Confidence 63
No 114
>PRK09039 hypothetical protein; Validated
Probab=69.74 E-value=1.8e+02 Score=33.38 Aligned_cols=46 Identities=9% Similarity=0.214 Sum_probs=27.2
Q ss_pred hhhHHHHHHHhhhhhhhHHHhhhhhhhhccchhhHHHHHHHHHhhh
Q 002212 791 TKLQTELKLCRERLGVVKREFEDLTKKSWKIDSDLQTVQMEIQKSS 836 (953)
Q Consensus 791 ~kl~~e~k~~~e~l~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~ 836 (953)
..|+.++.--|.+|+.++-+|+....+......+|..++.+|+..+
T Consensus 140 ~~L~~qI~aLr~Qla~le~~L~~ae~~~~~~~~~i~~L~~~L~~a~ 185 (343)
T PRK09039 140 ELLNQQIAALRRQLAALEAALDASEKRDRESQAKIADLGRRLNVAL 185 (343)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455555555555666666666666655556666666665555554
No 115
>PF05557 MAD: Mitotic checkpoint protein; InterPro: IPR008672 This family consists of several eukaryotic mitotic checkpoint (Mitotic arrest deficient or MAD) proteins. The mitotic spindle checkpoint monitors proper attachment of the bipolar spindle to the kinetochores of aligned sister chromatids and causes a cell cycle arrest in prometaphase when failures occur. Multiple components of the mitotic spindle checkpoint have been identified in Saccharomyces cerevisiae and higher eukaryotes. In Saccharomyces cerevisiae, the existence of a Mad1-dependent complex containing Mad2, Mad3, Bub3 and Cdc20 has been demonstrated [].; PDB: 1GO4_F 4DZO_A.
Probab=68.50 E-value=23 Score=43.72 Aligned_cols=67 Identities=21% Similarity=0.337 Sum_probs=38.0
Q ss_pred cHHHHHHHHHHHHhhhhhhHHHHHH-HHHHHHHHHHHHHHHHHhHHHHHHHhhHHHHHhhhHHHHHHHHhh
Q 002212 477 NDELQLKHKVLIEEKSNLIELYERK-EMEMKREAENLELQLAEMNEENEKLLGLYEKAMQERDEFKRMISL 546 (953)
Q Consensus 477 n~e~~~~~~~l~e~~~~l~~~~~~~-~~~~~~~~~~L~~ql~e~~~en~kl~~lye~am~e~d~~~r~~~~ 546 (953)
|+.|...++.|-+.+..-..+.-.. ..-....+.+|+.++...+-.|..|+-.|-+..+| |+..+.+
T Consensus 575 n~~L~~~l~~le~~~~~~~~~~p~~~~~~~~~e~~~l~~~~~~~ekr~~RLkevf~~ks~e---Fr~av~~ 642 (722)
T PF05557_consen 575 NEDLLARLRSLEEGNSQPVDAVPTSSLESQEKEIAELKAELASAEKRNQRLKEVFKAKSQE---FREAVYS 642 (722)
T ss_dssp HHHHHHHHHHHTTTT----------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHH
T ss_pred HHHHHHHHHhcccCCCCCcccccchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHH
Confidence 6677777766644444323322110 12233457888888888899999999999877654 5555443
No 116
>PF10473 CENP-F_leu_zip: Leucine-rich repeats of kinetochore protein Cenp-F/LEK1; InterPro: IPR019513 Cenp-F, a centromeric kinetochore, microtubule-binding protein consisting of two 1,600-amino acid-long coils, is essential for the full functioning of the mitotic checkpoint pathway [, ]. There are several leucine-rich repeats along the sequence of LEK1 that are considered to be zippers, though they do not appear to be binding DNA directly in this instance []. ; GO: 0008134 transcription factor binding, 0042803 protein homodimerization activity, 0045502 dynein binding
Probab=68.45 E-value=1.5e+02 Score=30.47 Aligned_cols=123 Identities=24% Similarity=0.244 Sum_probs=63.6
Q ss_pred HHHHHHHHHHHHHHHHHhhccCchhhhhhhhcccccCCCccccchhhHHHHHHHHHHHHhhhhHHHhhhhhhhccccchh
Q 002212 379 DEKEKLERHVSDLVKKLEEQTCPISAKEETQGFQLSTNVPTINFDDQVELKTMVDAIAVASQREAEAHQTAIGLSKMHDE 458 (953)
Q Consensus 379 Een~kl~r~i~~L~~el~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~e~kt~v~aia~asq~~~e~~~~~i~l~k~~~~ 458 (953)
-+++-|..+|..|..+|+........+...- =+.+.++-||..-|-...+....++.--..+.++.+.
T Consensus 17 ~e~dsle~~v~~LEreLe~~q~~~e~~~~da------------En~k~eie~L~~el~~lt~el~~L~~EL~~l~sEk~~ 84 (140)
T PF10473_consen 17 SEKDSLEDHVESLERELEMSQENKECLILDA------------ENSKAEIETLEEELEELTSELNQLELELDTLRSEKEN 84 (140)
T ss_pred HhHhhHHHHHHHHHHHHHHHHHhHHHHHHHH------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455677777777777776655553222111 1256666666666666555555554444444444344
Q ss_pred hHHHHHHHHhhhhhhhhccHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHhH
Q 002212 459 LRLELEVLNKEKSEFNKLNDELQLKHKVLIEEKSNLIELYERKEMEMKREAENLELQLAEMN 520 (953)
Q Consensus 459 ~~~~~e~~~~~~~e~~~ln~e~~~~~~~l~e~~~~l~~~~~~~~~~~~~~~~~L~~ql~e~~ 520 (953)
|--.++-...+-+++..+|....--++.+=.+ ++. ..++.+..+..|+.|+.+++
T Consensus 85 L~k~lq~~q~kv~eLE~~~~~~~~~l~~~E~e---k~q----~~e~~~~~ve~L~~ql~~L~ 139 (140)
T PF10473_consen 85 LDKELQKKQEKVSELESLNSSLENLLQEKEQE---KVQ----LKEESKSAVEMLQKQLKELN 139 (140)
T ss_pred HHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHH---HHH----HHHHHHHHHHHHHHHHhhhc
Confidence 44444444444444444443333222222111 222 24566677777888777765
No 117
>PRK01156 chromosome segregation protein; Provisional
Probab=68.39 E-value=3.3e+02 Score=34.51 Aligned_cols=39 Identities=13% Similarity=0.150 Sum_probs=19.0
Q ss_pred HHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHhhccCch
Q 002212 364 QAEMETLRKQLEFSLDEKEKLERHVSDLVKKLEEQTCPI 402 (953)
Q Consensus 364 ~~El~~~~k~l~~clEen~kl~r~i~~L~~el~~~~~~~ 402 (953)
..++....+.+.........+...+..+..++......+
T Consensus 196 e~eL~~~~~~i~el~~~~~~l~~~i~~~~~el~~~~~~l 234 (895)
T PRK01156 196 NLELENIKKQIADDEKSHSITLKEIERLSIEYNNAMDDY 234 (895)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344455555555555555555555555555544444333
No 118
>KOG0243 consensus Kinesin-like protein [Cytoskeleton]
Probab=68.04 E-value=1.8e+02 Score=38.07 Aligned_cols=160 Identities=18% Similarity=0.226 Sum_probs=99.3
Q ss_pred HHHHhhhHHHHHHHhhhhhhhH---------HHhhhhhhhhccchhhHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHH
Q 002212 787 EEEKTKLQTELKLCRERLGVVK---------REFEDLTKKSWKIDSDLQTVQMEIQKSSRSVEEMELAHQAVLQEQEALL 857 (953)
Q Consensus 787 ee~~~kl~~e~k~~~e~l~~~~---------~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~ 857 (953)
=+|-.+|..++..+|||-|+.- +|...+..++...+.+|+.++..|.+.--...=...--+....+++.+.
T Consensus 410 ~~EIerLK~dl~AaReKnGvyisee~y~~~e~e~~~~~~~ieele~el~~~~~~l~~~~e~~~~~~~~~~~l~~~~~~~k 489 (1041)
T KOG0243|consen 410 YEEIERLKRDLAAAREKNGVYISEERYTQEEKEKKEMAEQIEELEEELENLEKQLKDLTELYMNQLEIKELLKEEKEKLK 489 (1041)
T ss_pred HHHHHHHHHHHHHhHhhCceEechHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHH
Confidence 3567789999999999999853 3555666656666666666655554432222211111124445667777
Q ss_pred HHHHhchhhHHHHHHHHhhhhhhhhhhHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhhhhcccc-------c---
Q 002212 858 EIREKGKTEIESMILEYMQHVFEADLKEAEMRIVEEELQLELRRMDELRVLRAAAAEKKAQLLEHTKSK-------S--- 927 (953)
Q Consensus 858 e~~~~~~~~~~~~~~~~~~~~f~~~l~~~e~~~~~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~-------~--- 927 (953)
.-..+--++|.++=-+|+|..-.--+++.=+...+...-.-.+++-+|+.....+...+..|.+-.... .
T Consensus 490 ~~L~~~~~el~~~~ee~~~~~~~l~~~e~ii~~~~~se~~l~~~a~~l~~~~~~s~~d~s~l~~kld~~~~~~d~n~~~~ 569 (1041)
T KOG0243|consen 490 SKLQNKNKELESLKEELQQAKATLKEEEEIISQQEKSEEKLVDRATKLRRSLEESQDDLSSLFEKLDRKDRLDDDNQEVI 569 (1041)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhccccccHHHH
Confidence 888888999999999999987763333333444444444445668888888888877777666533111 1
Q ss_pred hhhhHHHHHHHHHHHHHHH
Q 002212 928 CLFSEKMQEELKNVWSYLF 946 (953)
Q Consensus 928 ~~~~~k~~~~~~~~~~~~~ 946 (953)
-+|...+-..+.+++..|.
T Consensus 570 ~~~~~~l~~~~~~~~~~v~ 588 (1041)
T KOG0243|consen 570 DDFQSQLSENLSTLHGLVA 588 (1041)
T ss_pred HHHhhhhhHHHHHHHHHHh
Confidence 1455555556666665554
No 119
>smart00787 Spc7 Spc7 kinetochore protein. This domain is found in cell division proteins which are required for kinetochore-spindle association.
Probab=67.68 E-value=2.3e+02 Score=32.36 Aligned_cols=194 Identities=17% Similarity=0.221 Sum_probs=112.4
Q ss_pred hhhhhhhhhHHHHhhhHhhhhhhhHhhhhhHHHHHHhhh-----hhhHHhhHHHHhHHHHHhHHHhhhhhcccccchhhH
Q 002212 610 ANTITLFGSVEKAFAEVDKLSGDIVAMEDSIQAKQQQCG-----SLKHLCSEMQERKALVDNKLMALKYSLSSFSSSAAY 684 (953)
Q Consensus 610 ~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~l~~~~~~~~~~~~~~~~k~~~~~~~~~~f~~~~~~ 684 (953)
.-+|+.+-+.. --..||.+.|..-..-+..-.+++- -.+.-.+...+=|.+.++.|--+|= -+-..+-..|
T Consensus 59 ~~~iP~LElY~---~sC~EL~~~I~egr~~~~~~E~et~~~nPpLF~EY~~a~~d~r~lm~~Qf~lvK~-~aRl~ak~~W 134 (312)
T smart00787 59 YCTVPLLELYQ---FSCKELKKYISEGRDLFKEIEEETLINNPPLFKEYFSASPDVKLLMDKQFQLVKT-FARLEAKKMW 134 (312)
T ss_pred cCCCcHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHhhcCcHHHHHHHcCCHHHHHHHHHHHHHHHH-HHHHHHHHHH
Confidence 44444433333 3345555555544443333333322 1222333445566666776655441 1223455667
Q ss_pred HHHHHHhhhhccccchhhhhhhHhhhHhHhHhhHHHHHHhhhhhhhHHHHHHhHHHHHhHhHHHhhhcccceeeEeeccc
Q 002212 685 FEQRAARSRARVTTSSTYLNQKKEQLVHLECCKREIEDALGKVQRSEAELRNNLALLKSKLEEENRRQENEKVLFAIDNI 764 (953)
Q Consensus 685 ~~~~~~~~~~~~~~~~~~~~~k~~~l~~l~~~k~~~~~~~~~~~~~e~e~~~~~~~~k~k~~~e~~~~e~e~vl~~idn~ 764 (953)
|+-|-.. .. +....--+.+..|+.-+.-+......+...=.+|++..+.|+.++...-+.... |++.
T Consensus 135 YeWR~kl----le---gLk~~L~~~~~~l~~D~~~L~~~~~~l~~~~~~l~~~~~~L~~e~~~L~~~~~e------~~~~ 201 (312)
T smart00787 135 YEWRMKL----LE---GLKEGLDENLEGLKEDYKLLMKELELLNSIKPKLRDRKDALEEELRQLKQLEDE------LEDC 201 (312)
T ss_pred HHHHHHH----HH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHH------HHhC
Confidence 7777543 11 222222344556677777777777777777778888888888888763332211 2222
Q ss_pred cccCCcccccccccchhhhhccHHHHhhhHHHHHHHhhhhhhhHHHhhhhhhhhccchhhHHHHHHHHHhhhhhHHHHHH
Q 002212 765 EKVDHPQRNWNLGGKATELLKSEEEKTKLQTELKLCRERLGVVKREFEDLTKKSWKIDSDLQTVQMEIQKSSRSVEEMEL 844 (953)
Q Consensus 765 ~~~~~~~~~~~~~gka~~llk~ee~~~kl~~e~k~~~e~l~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~ 844 (953)
+ +.|++..|++|..+..+|..+.++...+..+++.+...|+.+.....|...
T Consensus 202 d----------------------------~~eL~~lk~~l~~~~~ei~~~~~~l~e~~~~l~~l~~~I~~~~~~k~e~~~ 253 (312)
T smart00787 202 D----------------------------PTELDRAKEKLKKLLQEIMIKVKKLEELEEELQELESKIEDLTNKKSELNT 253 (312)
T ss_pred C----------------------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 2 456777778888888888888888888888888888888777666666544
Q ss_pred HHHH
Q 002212 845 AHQA 848 (953)
Q Consensus 845 ~~~~ 848 (953)
.|+.
T Consensus 254 ~I~~ 257 (312)
T smart00787 254 EIAE 257 (312)
T ss_pred HHHH
Confidence 4443
No 120
>KOG0994 consensus Extracellular matrix glycoprotein Laminin subunit beta [Extracellular structures]
Probab=67.58 E-value=4.3e+02 Score=35.57 Aligned_cols=61 Identities=18% Similarity=0.287 Sum_probs=49.4
Q ss_pred chhhhHHHHHHHH-------hhHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHhhccCchhhhhhhh
Q 002212 349 VNEENEFLRMQAI-------HNQAEMETLRKQLEFSLDEKEKLERHVSDLVKKLEEQTCPISAKEETQ 409 (953)
Q Consensus 349 ~~~Ene~Lr~~~~-------~~~~El~~~~k~l~~clEen~kl~r~i~~L~~el~~~~~~~~~~~~~~ 409 (953)
+++..+.||-|++ +...-|.+++..+.+..-+.+-|+|+.+.|..-..+.++.+++.+..-
T Consensus 1230 l~~~~~~lr~~l~~~~e~L~~~E~~Lsdi~~~~~~a~~~LesLq~~~~~l~~~~keL~e~~~~ik~sd 1297 (1758)
T KOG0994|consen 1230 LASATESLRRQLQALTEDLPQEEETLSDITNSLPLAGKDLESLQREFNGLLTTYKELREQLEKIKESD 1297 (1758)
T ss_pred HHHHHHHHHHHHHHHHhhhhhhhhhhhhhhhccchhhhhHHHHHHHHHHHHHHHHHHHHHHHHhhccC
Confidence 6777777776654 556667788888889999999999999999999999998888777654
No 121
>KOG0979 consensus Structural maintenance of chromosome protein SMC5/Spr18, SMC superfamily [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=65.32 E-value=4.4e+02 Score=34.81 Aligned_cols=49 Identities=12% Similarity=0.203 Sum_probs=39.4
Q ss_pred hhhhhhhHHHHhhhHhhhhhhhHhhhhhHHHHHHhhhhhhHHhhHHHHh
Q 002212 612 TITLFGSVEKAFAEVDKLSGDIVAMEDSIQAKQQQCGSLKHLCSEMQER 660 (953)
Q Consensus 612 ~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 660 (953)
++.+.++=|.|+-+.+..-.+|...+..+..+-+++.-++.-++..+++
T Consensus 851 ~~~~~n~ne~~vq~y~~r~~el~~l~~~~~~~~~~le~i~~kl~~~ke~ 899 (1072)
T KOG0979|consen 851 ALKFENVNEDAVQQYEVREDELRELETKLEKLSEDLERIKDKLSDVKEV 899 (1072)
T ss_pred HHHHhcCChHHHHHHHHHHHHHHHHHhhhhhhhhhHHHHHHHHhhHHHH
Confidence 4566677788888889888999999988888888888888777776654
No 122
>TIGR03007 pepcterm_ChnLen polysaccharide chain length determinant protein, PEP-CTERM locus subfamily. Members of this protein family belong to the family of polysaccharide chain length determinant proteins (pfam02706). All are found in species that encode the PEP-CTERM/exosortase system predicted to act in protein sorting in a number of Gram-negative bacteria, and are found near the epsH homolog that is the putative exosortase gene.
Probab=64.75 E-value=2.8e+02 Score=32.45 Aligned_cols=94 Identities=14% Similarity=0.014 Sum_probs=56.3
Q ss_pred HhhhhhhHHhhHHHHhHHHHHhHHHhhhhhcccccchhhHHHHHHHhhhhccccchhhhhhhHhhhHhHhHhhHHHHHHh
Q 002212 645 QQCGSLKHLCSEMQERKALVDNKLMALKYSLSSFSSSAAYFEQRAARSRARVTTSSTYLNQKKEQLVHLECCKREIEDAL 724 (953)
Q Consensus 645 ~~~~~l~~~~~~~~~~~~~~~~k~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~l~~l~~~k~~~~~~~ 724 (953)
+++..+...+...+.+...++.++.+|+=.++...+... +. . ......-..+|..++.-..++..-.
T Consensus 204 ~~l~~l~~~l~~~~~~l~~~~a~~~~l~~~l~~~~~~~~-~~-----~-------~~~~~~l~~~l~~l~~~l~~l~~~y 270 (498)
T TIGR03007 204 SEISEAQEELEAARLELNEAIAQRDALKRQLGGEEPVLL-AG-----S-------SVANSELDGRIEALEKQLDALRLRY 270 (498)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCcC-cc-----c-------ccCCCchHHHHHHHHHHHHHHHHHh
Confidence 455666666667777777777777777766665544432 00 0 1112233455666666666665555
Q ss_pred hhhhhhHHHHHHhHHHHHhHhHHHhhh
Q 002212 725 GKVQRSEAELRNNLALLKSKLEEENRR 751 (953)
Q Consensus 725 ~~~~~~e~e~~~~~~~~k~k~~~e~~~ 751 (953)
+-.+--=..++..|+.++..+.++-..
T Consensus 271 ~~~hP~v~~l~~qi~~l~~~l~~~~~~ 297 (498)
T TIGR03007 271 TDKHPDVIATKREIAQLEEQKEEEGSA 297 (498)
T ss_pred cccChHHHHHHHHHHHHHHHHHhhccc
Confidence 555555567888888888888776543
No 123
>KOG0999 consensus Microtubule-associated protein Bicaudal-D [Intracellular trafficking, secretion, and vesicular transport]
Probab=63.20 E-value=1.5e+02 Score=36.46 Aligned_cols=126 Identities=23% Similarity=0.284 Sum_probs=0.0
Q ss_pred hhHHHHHHHhhhhhhhHHHhhhhhhhhccchhhHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHhchhhHHHHH
Q 002212 792 KLQTELKLCRERLGVVKREFEDLTKKSWKIDSDLQTVQMEIQKSSRSVEEMELAHQAVLQEQEALLEIREKGKTEIESMI 871 (953)
Q Consensus 792 kl~~e~k~~~e~l~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~ 871 (953)
+|++|+|+.|--|.-|+.|.+.|.++..+.-..=+.|+.+--+.-.-+.|..-.=++.+.++ .|+.|..+. ++..+
T Consensus 111 eleneLKq~r~el~~~q~E~erl~~~~sd~~e~~~~~E~qR~rlr~elKe~KfRE~RllseY---SELEEENIs-LQKqV 186 (772)
T KOG0999|consen 111 ELENELKQLRQELTNVQEENERLEKVHSDLKESNAAVEDQRRRLRDELKEYKFREARLLSEY---SELEEENIS-LQKQV 186 (772)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcchhhHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHhcch-HHHHH
Q ss_pred HHHhhhhhhhhhhHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhhh
Q 002212 872 LEYMQHVFEADLKEAEMRIVEEELQLELRRMDELRVLRAAAAEKKAQLLE 921 (953)
Q Consensus 872 ~~~~~~~f~~~l~~~e~~~~~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~ 921 (953)
--+.|+-.++.=-.-||+.++|+.-+=-..++|.-..+.+|-..+-+.|.
T Consensus 187 s~LR~sQVEyEglkheikRleEe~elln~q~ee~~~Lk~IAekQlEEALe 236 (772)
T KOG0999|consen 187 SNLRQSQVEYEGLKHEIKRLEEETELLNSQLEEAIRLKEIAEKQLEEALE 236 (772)
T ss_pred HHHhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
No 124
>PF05377 FlaC_arch: Flagella accessory protein C (FlaC); InterPro: IPR008039 Although archaeal flagella appear superficially similar to those of bacteria, they are quite distinct []. In several archaea, the flagellin genes are followed immediately by the flagellar accessory genes flaCDEFGHIJ. The gene products may have a role in translocation, secretion, or assembly of the flagellum. FlaC is a protein whose exact role is unknown but it has been shown to be membrane-associated (by immuno-blotting fractionated cells) [].
Probab=62.70 E-value=20 Score=31.56 Aligned_cols=46 Identities=28% Similarity=0.370 Sum_probs=37.7
Q ss_pred hhhhhhhhccchhhHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHH
Q 002212 811 FEDLTKKSWKIDSDLQTVQMEIQKSSRSVEEMELAHQAVLQEQEAL 856 (953)
Q Consensus 811 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~ 856 (953)
|+++..+..++++.|.+++.|+++...++++++-.++++|-=+|+.
T Consensus 2 i~elEn~~~~~~~~i~tvk~en~~i~~~ve~i~envk~ll~lYE~V 47 (55)
T PF05377_consen 2 IDELENELPRIESSINTVKKENEEISESVEKIEENVKDLLSLYEVV 47 (55)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3456667888999999999999999999999998888887655443
No 125
>PF09730 BicD: Microtubule-associated protein Bicaudal-D; InterPro: IPR018477 BicD proteins consist of three coiled-coiled domains and are involved in dynein-mediated minus end-directed transport from the Golgi apparatus to the endoplasmic reticulum (ER) []. Glycogen synthase kinase-3beta (GSK-3beta) is required for the binding of BICD to dynein but not to dynactin, acting to maintain the anchoring of microtubules to the centromere []. It appears that amino-acid residues 437-617 of BicD and the kinase activity of GSK-3 are necessary for the formation of a complex between BicD and GSK-3beta in intact cells [].; GO: 0006810 transport, 0005794 Golgi apparatus
Probab=62.69 E-value=4.2e+02 Score=33.74 Aligned_cols=180 Identities=21% Similarity=0.231 Sum_probs=94.0
Q ss_pred hhhHhhhhhHHHHHHhhhhhhHHhhHHHHhHHHHHhHHHhhhhhcccccchhhHHHHHHHhhhhccccchhhhhhhHhhh
Q 002212 631 GDIVAMEDSIQAKQQQCGSLKHLCSEMQERKALVDNKLMALKYSLSSFSSSAAYFEQRAARSRARVTTSSTYLNQKKEQL 710 (953)
Q Consensus 631 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~k~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~l 710 (953)
++=......++..|.++..-+..+++.|+|-+-+-..+.||+.--+.- +.-++.+. +....+.-+ ...|.-..++ +
T Consensus 279 ~EK~~L~~~L~e~Q~qLe~a~~als~q~eki~~L~e~l~aL~~l~~~k-e~~~~~d~-~~~~~s~~d-~~~ye~Di~~-~ 354 (717)
T PF09730_consen 279 REKSSLLSNLQESQKQLEHAQGALSEQQEKINRLTEQLDALRKLQEDK-EQQSAEDS-EKERDSHED-GDYYEVDING-L 354 (717)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccch-hhhhhhhc-ccccccccc-cchhhhcccc-H
Confidence 344455667889999999999999999999999999999998721110 00111000 000000000 1111111111 2
Q ss_pred HhHhHhhHHHHHHhhhhhhhHHHHHHhHHHHHhHhHHHhhhcccceeeEeeccccccCCcccccccccchhhhhccHHHH
Q 002212 711 VHLECCKREIEDALGKVQRSEAELRNNLALLKSKLEEENRRQENEKVLFAIDNIEKVDHPQRNWNLGGKATELLKSEEEK 790 (953)
Q Consensus 711 ~~l~~~k~~~~~~~~~~~~~e~e~~~~~~~~k~k~~~e~~~~e~e~vl~~idn~~~~~~~~~~~~~~gka~~llk~ee~~ 790 (953)
..|++. ...|..-+ +.|+..|..||+|+..=-.++..++- .| .+..++ ..+.-
T Consensus 355 eiLe~K---y~vav~Ev----~~Lk~ELk~Lk~k~~~~~~~~~~ek~---------------~~--~~e~q~---L~ekl 407 (717)
T PF09730_consen 355 EILECK---YKVAVSEV----IQLKAELKALKSKYNELEERYKQEKD---------------RL--ESEVQN---LKEKL 407 (717)
T ss_pred HHHHHH---HHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHH---------------HH--HHHHHH---HHHHH
Confidence 222221 22222222 23466666677777662223333321 00 111111 12333
Q ss_pred hhhHHHHHHHhhhhhhhHHHhhhhhhhhccchhhHHHHHHHHHhhhhhHHH
Q 002212 791 TKLQTELKLCRERLGVVKREFEDLTKKSWKIDSDLQTVQMEIQKSSRSVEE 841 (953)
Q Consensus 791 ~kl~~e~k~~~e~l~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e 841 (953)
+.+....+..+++++.+++|+..+..-.++-...+.+.+.|+--.+..+.=
T Consensus 408 ~~lek~~re~qeri~~LE~ELr~l~~~A~E~q~~LnsAQDELvtfSEeLAq 458 (717)
T PF09730_consen 408 MSLEKSSREDQERISELEKELRALSKLAGESQGSLNSAQDELVTFSEELAQ 458 (717)
T ss_pred HHHHHhhhhhHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHH
Confidence 444555566677888888888888777777777777777776665554443
No 126
>PF14197 Cep57_CLD_2: Centrosome localisation domain of PPC89
Probab=62.48 E-value=47 Score=30.09 Aligned_cols=67 Identities=31% Similarity=0.365 Sum_probs=47.6
Q ss_pred hHHHHHHHHHHHHHHHhhHhhhccCCccccCCCCCCCcccchhhhHHHHHHHHhhHHHHHHHHHHhhhhHHHHHHHHHHH
Q 002212 309 MMSQQIMVLQNKLLEALDWKLMHESDSSAVQEPGSPWRTSVNEENEFLRMQAIHNQAEMETLRKQLEFSLDEKEKLERHV 388 (953)
Q Consensus 309 ~lleeIs~Lqd~Lle~ld~k~~~e~~~v~~~~~~~~~~~s~~~Ene~Lr~~~~~~~~El~~~~k~l~~clEen~kl~r~i 388 (953)
.|..++..||++|-. +..+. .....+|+.|+ .|=+.-.+.++.+.+++.+|..++
T Consensus 2 ~Lea~~~~Lr~rLd~-~~rk~-----------------~~~~~~~k~L~-------~ERd~~~~~l~~a~~e~~~Lk~E~ 56 (69)
T PF14197_consen 2 KLEAEIATLRNRLDS-LTRKN-----------------SVHEIENKRLR-------RERDSAERQLGDAYEENNKLKEEN 56 (69)
T ss_pred hHHHHHHHHHHHHHH-HHHHH-----------------HHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 355678888888622 22220 11234555555 777888889999999999999999
Q ss_pred HHHHHHHhhccC
Q 002212 389 SDLVKKLEEQTC 400 (953)
Q Consensus 389 ~~L~~el~~~~~ 400 (953)
+.|..+|+.++.
T Consensus 57 e~L~~el~~~r~ 68 (69)
T PF14197_consen 57 EALRKELEELRA 68 (69)
T ss_pred HHHHHHHHHhhc
Confidence 999999988764
No 127
>TIGR03185 DNA_S_dndD DNA sulfur modification protein DndD. This model describes the DndB protein encoded by an operon associated with a sulfur-containing modification to DNA. The operon is sporadically distributed in bacteria, much like some restriction enzyme operons. DndD is described as a putative ATPase. The small number of examples known so far include species from among the Firmicutes, Actinomycetes, Proteobacteria, and Cyanobacteria.
Probab=62.38 E-value=3.8e+02 Score=33.05 Aligned_cols=98 Identities=10% Similarity=0.113 Sum_probs=63.5
Q ss_pred HHHHHHHHHHHHHHHHHHHhHHHHHHHhhHHHHHhhhHHHHHHHHhhhcCCccccccccccccchhhccccccccccchh
Q 002212 500 RKEMEMKREAENLELQLAEMNEENEKLLGLYEKAMQERDEFKRMISLCGQNRAEASGEIYCPEKLVEIDGEAAFADMETE 579 (953)
Q Consensus 500 ~~~~~~~~~~~~L~~ql~e~~~en~kl~~lye~am~e~d~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 579 (953)
.++.+++.++.+++.+..+..++-..+-.-++.|=+.++++++.+...|..+..
T Consensus 209 ~~~~~le~el~~l~~~~e~l~~~i~~l~~ele~a~~~l~~l~~~~~~~GG~~~~-------------------------- 262 (650)
T TIGR03185 209 SEIEALEAELKEQSEKYEDLAQEIAHLRNELEEAQRSLESLEKKFRSEGGDLFE-------------------------- 262 (650)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHH--------------------------
Confidence 456666677777777777777777777777777778888888877664332111
Q ss_pred hhchhhhhhhhhHHHHHHHHHHHHHHhhhhhhhhhhhhhHHHHhhhHh
Q 002212 580 QLNLANIKVTEDLNLVRLKLEKAQEKLSDSANTITLFGSVEKAFAEVD 627 (953)
Q Consensus 580 ~~~~~~~~~~~~l~~~~~k~~~~~~~~~~~~~~~~~~~~~e~~~~~~~ 627 (953)
.-......+..++..+..+..++..-+.+...|.++-..+..+.
T Consensus 263 ----~r~~Le~ei~~le~e~~e~~~~l~~l~~~~~p~~l~~~ll~~~~ 306 (650)
T TIGR03185 263 ----EREQLERQLKEIEAARKANRAQLRELAADPLPLLLIPNLLDSTK 306 (650)
T ss_pred ----HHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCHhhhHHHHHHHH
Confidence 01234445566666777788888777766666666655544443
No 128
>PF14662 CCDC155: Coiled-coil region of CCDC155
Probab=61.46 E-value=2.4e+02 Score=30.52 Aligned_cols=50 Identities=16% Similarity=0.247 Sum_probs=41.5
Q ss_pred HHhhHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHhhccCchhhhhhhh
Q 002212 360 AIHNQAEMETLRKQLEFSLDEKEKLERHVSDLVKKLEEQTCPISAKEETQ 409 (953)
Q Consensus 360 ~~~~~~El~~~~k~l~~clEen~kl~r~i~~L~~el~~~~~~~~~~~~~~ 409 (953)
-.+...|...|.......-+.|++|.++|.+|...++...+++.++++-.
T Consensus 17 n~~L~~en~kL~~~ve~~ee~na~L~~e~~~L~~q~~s~Qqal~~aK~l~ 66 (193)
T PF14662_consen 17 NQKLADENAKLQRSVETAEEGNAQLAEEITDLRKQLKSLQQALQKAKALE 66 (193)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33445788888888888889999999999999999999999888886544
No 129
>PF09728 Taxilin: Myosin-like coiled-coil protein; InterPro: IPR019132 Taxilin contains an extraordinarily long coiled-coil domain in its C-terminal half and is ubiquitously expressed. It is a novel binding partner of several syntaxin family members and is possibly involved in Ca(2+)-dependent exocytosis in neuroendocrine cells []. Gamma-taxilin, described as leucine zipper protein Factor Inhibiting ATF4-mediated Transcription (FIAT), localises to the nucleus in osteoblasts and dimerises with ATF4 to form inactive dimers, thus inhibiting ATF4-mediated transcription [].
Probab=61.32 E-value=2.9e+02 Score=31.39 Aligned_cols=239 Identities=24% Similarity=0.280 Sum_probs=124.2
Q ss_pred HHHHHHHhhHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHhhccCchhhhhhhhcccccCCCccccchhhHHHHHHHHH
Q 002212 355 FLRMQAIHNQAEMETLRKQLEFSLDEKEKLERHVSDLVKKLEEQTCPISAKEETQGFQLSTNVPTINFDDQVELKTMVDA 434 (953)
Q Consensus 355 ~Lr~~~~~~~~El~~~~k~l~~clEen~kl~r~i~~L~~el~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~e~kt~v~a 434 (953)
.+.-...+...|.+.++.+++-+...+.+|+.---.|+..+...+........+. +. -+-.-..-+.+.+..
T Consensus 47 ~~~Kk~~~l~kek~~l~~E~~k~~~~k~KLE~LCRELQk~Nk~lkeE~~~~~~ee-e~-------kR~el~~kFq~~L~d 118 (309)
T PF09728_consen 47 KLQKKQEQLQKEKDQLQSELSKAILAKSKLESLCRELQKQNKKLKEESKRRAREE-EE-------KRKELSEKFQATLKD 118 (309)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HH-------HHHHHHHHHHHHHHH
Confidence 3334455566777778888888888888887766666666665543332111111 00 000011111222222
Q ss_pred HHHhhhhHHHhhhhhhhccccchhhHHHHHHHHhhhhhhhhccHHHHHHHHHHHHhhh----hhhHHHHHHHHHHHHHHH
Q 002212 435 IAVASQREAEAHQTAIGLSKMHDELRLELEVLNKEKSEFNKLNDELQLKHKVLIEEKS----NLIELYERKEMEMKREAE 510 (953)
Q Consensus 435 ia~asq~~~e~~~~~i~l~k~~~~~~~~~e~~~~~~~e~~~ln~e~~~~~~~l~e~~~----~l~~~~~~~~~~~~~~~~ 510 (953)
|..- =.+-++..+.+..+ |.+++.+|+.|++--. |..+++.+ .
T Consensus 119 Iq~~---~ee~~~~~~k~~~e---------------------N~~L~eKlK~l~eQye~rE~~~~~~~k~---------k 165 (309)
T PF09728_consen 119 IQAQ---MEEQSERNIKLREE---------------------NEELREKLKSLIEQYELREEHFEKLLKQ---------K 165 (309)
T ss_pred HHHH---HHhccchhHHHHHH---------------------HHHHHHHHHHHHHHHHHHHHHHHHHhhH---------H
Confidence 2110 01112222334444 8888888888877655 44444333 3
Q ss_pred HHHHHHHHh--HHHHHHHhhHHHHHhhhHHHHHHHHhhhcCCccccccccccccchhhccccccccccchhhhchhhhhh
Q 002212 511 NLELQLAEM--NEENEKLLGLYEKAMQERDEFKRMISLCGQNRAEASGEIYCPEKLVEIDGEAAFADMETEQLNLANIKV 588 (953)
Q Consensus 511 ~L~~ql~e~--~~en~kl~~lye~am~e~d~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 588 (953)
+|+.||.+. ...+..+..-.+++.++++-+-.-.. .| ...--....+
T Consensus 166 eLE~Ql~~AKl~q~~~~~~~e~~k~~~~~~~~l~~~~-------------~~------------------~~~~~~E~~L 214 (309)
T PF09728_consen 166 ELEVQLAEAKLEQQQEEAEQEKEKAKQEKEILLEEAA-------------QV------------------QTLKETEKEL 214 (309)
T ss_pred HHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHH-------------HH------------------HHHHHHHHHH
Confidence 444444332 23333333334444444441111000 00 0011134455
Q ss_pred hhhHHHHHHHHHHHHHHhhhhhhhhhhhhhHHHHhhhHhhhhhhhHhhhhhHHHHHHhhhhhhHHhhHHHHhHHHHHhHH
Q 002212 589 TEDLNLVRLKLEKAQEKLSDSANTITLFGSVEKAFAEVDKLSGDIVAMEDSIQAKQQQCGSLKHLCSEMQERKALVDNKL 668 (953)
Q Consensus 589 ~~~l~~~~~k~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~k~ 668 (953)
..-|+.--.|.+.+++-|..|-.+...|+ .+.++++..|...|-+-..-..-+..-...+-++.+-++..++.+
T Consensus 215 r~QL~~Y~~Kf~efq~tL~kSNe~F~tfk------~Emekm~Kk~kklEKE~~~~k~k~e~~n~~l~~m~eer~~~~~~~ 288 (309)
T PF09728_consen 215 REQLNLYSEKFEEFQDTLNKSNEVFETFK------KEMEKMSKKIKKLEKENQTWKSKWEKSNKALIEMAEERQKLEKEL 288 (309)
T ss_pred HHHHHHHHHHHHHHHHHHHHhHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHH
Confidence 66777777788888888888877765554 456777777777777777666666666666666666666655555
Q ss_pred Hhh
Q 002212 669 MAL 671 (953)
Q Consensus 669 ~~~ 671 (953)
..+
T Consensus 289 ~~~ 291 (309)
T PF09728_consen 289 EKL 291 (309)
T ss_pred HHH
Confidence 433
No 130
>PF05911 DUF869: Plant protein of unknown function (DUF869); InterPro: IPR008587 This family consists of a number of sequences found in plants. The function of this family is unknown.
Probab=60.98 E-value=4.6e+02 Score=33.64 Aligned_cols=44 Identities=23% Similarity=0.214 Sum_probs=39.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHhh
Q 002212 234 SLQALAAENQAALRLAKQREDEIQGLKMRLRFREAGIKRLEAVA 277 (953)
Q Consensus 234 ~LkkL~aEle~~~~Lv~qREeeiqs~KM~LRfREdkI~rLE~l~ 277 (953)
.+..+.+|+..+.+...+|..++|..++|..---.++..+|+.+
T Consensus 266 ~l~~~eeEnk~Lke~l~~k~~ELq~sr~~~a~ta~kL~~~e~ql 309 (769)
T PF05911_consen 266 RLQAMEEENKMLKEALAKKNSELQFSRNMYAKTASKLSQLEAQL 309 (769)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45667788888899999999999999999988889999999988
No 131
>PF12718 Tropomyosin_1: Tropomyosin like; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells. In striated muscle, tropomyosin mediate the interactions between the troponin complex and actin so as to regulate muscle contraction []. The role of tropomyosin in smooth muscle and non-muscle tissues is not clear. Tropomyosin is an alpha-helical protein that forms a coiled-coil structure of 2 parallel helices containing 2 sets of 7 alternating actin binding sites []. There are multiple cell-specific isoforms, created by differential splicing of the messenger RNA from one gene, but the proportions of the isoforms vary between different cell types. Muscle isoforms of tropomyosin are characterised by having 284 amino acid residues and a highly conserved N-terminal region, whereas non-muscle forms are generally smaller and are heterogeneous in their N-terminal region. This entry represents tropomyosin (Tmp) 1, 2 and 3. Within the yeast Tmp1 and Tmp2, biochemical and sequence analyses indicate that Tpm2 spans four actin monomers along a filament, whereas Tpm1 spans five. Despite its shorter length, Tpm2 can compete with Tpm1 for binding to F-actin. Over-expression of Tpm2 in vivo alters the axial budding of haploids to a bipolar pattern, and this can be partially suppressed by co-over-expression of Tpm1. This suggests distinct functions for the two tropomyosins, and indicates that the ratio between them is important for correct morphogenesis [].
Probab=59.68 E-value=2e+02 Score=29.12 Aligned_cols=51 Identities=22% Similarity=0.255 Sum_probs=32.6
Q ss_pred HHHHHHHhhHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHhhccCchhhh
Q 002212 355 FLRMQAIHNQAEMETLRKQLEFSLDEKEKLERHVSDLVKKLEEQTCPISAK 405 (953)
Q Consensus 355 ~Lr~~~~~~~~El~~~~k~l~~clEen~kl~r~i~~L~~el~~~~~~~~~~ 405 (953)
.|++++....+-.+.+....-.-...+..++.+|.+|+..+.....-+..+
T Consensus 4 ~lk~E~d~a~~r~e~~e~~~K~le~~~~~~E~EI~sL~~K~~~lE~eld~~ 54 (143)
T PF12718_consen 4 ALKLEADNAQDRAEELEAKVKQLEQENEQKEQEITSLQKKNQQLEEELDKL 54 (143)
T ss_pred HHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456666666666666666666666667777777777777666655444433
No 132
>PRK04863 mukB cell division protein MukB; Provisional
Probab=58.73 E-value=6.5e+02 Score=34.66 Aligned_cols=167 Identities=19% Similarity=0.282 Sum_probs=89.3
Q ss_pred hHHhhHHHHhHHHHHhHHHhhhhhcccccchhhHHHHHHHhhhhccccchhhhhhhHhhhHhHhHhhHHHHHHhhhhhhh
Q 002212 651 KHLCSEMQERKALVDNKLMALKYSLSSFSSSAAYFEQRAARSRARVTTSSTYLNQKKEQLVHLECCKREIEDALGKVQRS 730 (953)
Q Consensus 651 ~~~~~~~~~~~~~~~~k~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~l~~l~~~k~~~~~~~~~~~~~ 730 (953)
+....+...+..-+..+. |.|+....-..||- -+-|-..++.++..-.+-+..|..++..-..+.....+++.-
T Consensus 941 r~e~~~~~~~~~~~~~~~----~~l~~~~~~~~~~~--y~~~~~~l~~~~~~~~~Le~~Le~iE~~~~~areql~qaq~q 1014 (1486)
T PRK04863 941 KQDYQQAQQTQRDAKQQA----FALTEVVQRRAHFS--YEDAAEMLAKNSDLNEKLRQRLEQAEQERTRAREQLRQAQAQ 1014 (1486)
T ss_pred HHHHHHHHHHHHHHHHHH----HHHHHHHHHHHhcc--HHHHHhHhhcchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333334444444444444 33333344444444 223333445555555555566666655444444444444444
Q ss_pred HHHHHHhHHHHHhHhHHHhhhcccceeeEeeccccccCCcccccccccchhhhhccHHHHhhhHHHHHHHhh-------h
Q 002212 731 EAELRNNLALLKSKLEEENRRQENEKVLFAIDNIEKVDHPQRNWNLGGKATELLKSEEEKTKLQTELKLCRE-------R 803 (953)
Q Consensus 731 e~e~~~~~~~~k~k~~~e~~~~e~e~vl~~idn~~~~~~~~~~~~~~gka~~llk~ee~~~kl~~e~k~~~e-------~ 803 (953)
=....+.+..+++.+..-+++...-+. .++++. |+.+ .| |.+-+.+ .+..|...+--+|. +
T Consensus 1015 ~~q~~q~l~slksslq~~~e~L~E~eq--e~~~~g-~~~~------~~-~~~~~~~--~~~~l~~~l~~~~~~~~~~~~~ 1082 (1486)
T PRK04863 1015 LAQYNQVLASLKSSYDAKRQMLQELKQ--ELQDLG-VPAD------SG-AEERARA--RRDELHARLSANRSRRNQLEKQ 1082 (1486)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHcC-CCCC------cc-HHHHHHH--hHHHHHHHHHHhHHHHHHHHHH
Confidence 455556667777777753333222211 122222 1111 11 2333333 35788888888876 4
Q ss_pred hhhhHHHhhhhhhhhccchhhHHHHHHHHHhh
Q 002212 804 LGVVKREFEDLTKKSWKIDSDLQTVQMEIQKS 835 (953)
Q Consensus 804 l~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~ 835 (953)
++..+.||++|+++..+.+.++..+..+|...
T Consensus 1083 ~~~re~EIe~L~kkL~~~~~e~~~~re~I~~a 1114 (1486)
T PRK04863 1083 LTFCEAEMDNLTKKLRKLERDYHEMREQVVNA 1114 (1486)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 67778899999988888888888888777643
No 133
>TIGR01005 eps_transp_fam exopolysaccharide transport protein family. The model describes the exopolysaccharide transport protein family in bacteria. The transport protein is part of a large genetic locus which is associated with exopolysaccharide (EPS) biosynthesis. Detailed molecular characterization and gene fusion analysis revealed atleast seven gene products are involved in the overall regulation, which among other things, include exopolysaccharide biosynthesis, property of conferring virulence and exopolysaccharide export.
Probab=58.72 E-value=4.5e+02 Score=32.75 Aligned_cols=103 Identities=14% Similarity=0.164 Sum_probs=68.4
Q ss_pred HHhhhhhhHHhhHHHHhHHHHHhHHHhhhhhcccccchhhHHHHHHHhhhhccccchhhhhhhHhhhHhHhHhhHHHHHH
Q 002212 644 QQQCGSLKHLCSEMQERKALVDNKLMALKYSLSSFSSSAAYFEQRAARSRARVTTSSTYLNQKKEQLVHLECCKREIEDA 723 (953)
Q Consensus 644 ~~~~~~l~~~~~~~~~~~~~~~~k~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~l~~l~~~k~~~~~~ 723 (953)
.+++..|...++..+.++..+..++..++-.+.+-.... .+. ... .+.. .....+..-+.+++.++....++..-
T Consensus 236 ~~~L~~l~~ql~~a~~~~~~a~a~~~~l~~~l~~~~~~~-~~~--~~~-~~~~-~~~~~i~~L~~~l~~l~~~~~~l~~~ 310 (754)
T TIGR01005 236 TQQLAELNTELSRARANRAAAEGTADSVKKALQNGGSLD-VLP--EVL-SSQL-KLEDLIQRLRERQAELRATIADLSTT 310 (754)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcc-chh--hhh-cCcc-cccHHHHHHHHHHHHHHHHHHHHHHh
Confidence 467777888888888888888888887776665432211 010 000 0000 01145666777888888877788777
Q ss_pred hhhhhhhHHHHHHhHHHHHhHhHHHhhh
Q 002212 724 LGKVQRSEAELRNNLALLKSKLEEENRR 751 (953)
Q Consensus 724 ~~~~~~~e~e~~~~~~~~k~k~~~e~~~ 751 (953)
.+-.+-.=..++..|+.|+.++..|.++
T Consensus 311 y~~~hP~v~~l~~qi~~l~~~i~~e~~~ 338 (754)
T TIGR01005 311 MLANHPRVVAAKSSLADLDAQIRSELQK 338 (754)
T ss_pred hCCCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 7777777788999999999988776443
No 134
>PF15397 DUF4618: Domain of unknown function (DUF4618)
Probab=58.69 E-value=3.1e+02 Score=30.86 Aligned_cols=32 Identities=28% Similarity=0.404 Sum_probs=23.2
Q ss_pred HHhHHHHHHHHHHhhcCCCchhhhHHHHHHHHHHHHHHH
Q 002212 263 LRFREAGIKRLEAVASGKISAETHLLKEKEECLKEIESF 301 (953)
Q Consensus 263 LRfREdkI~rLE~l~~g~~sae~~Ll~Ene~L~eEIq~L 301 (953)
|++|..-+..+.... .+|...|..|..+|+..
T Consensus 1 i~~rr~sl~el~~h~-------~~L~~~N~~L~~~Iqdt 32 (258)
T PF15397_consen 1 IRNRRTSLQELKKHE-------DFLTKLNKELIKEIQDT 32 (258)
T ss_pred CccHHHHHHHHHHHH-------HHHHHhhHHHHHHHHhH
Confidence 345556666665544 58899999999999964
No 135
>KOG0982 consensus Centrosomal protein Nuf [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton]
Probab=58.10 E-value=1.3e+02 Score=36.03 Aligned_cols=115 Identities=25% Similarity=0.220 Sum_probs=0.0
Q ss_pred HHHHHhhhhhhhHHH---HHHhHHHHHhHhHHHhhhcccceeeEeeccccccCCcccccccccchhhhhccHHHHhhhHH
Q 002212 719 EIEDALGKVQRSEAE---LRNNLALLKSKLEEENRRQENEKVLFAIDNIEKVDHPQRNWNLGGKATELLKSEEEKTKLQT 795 (953)
Q Consensus 719 ~~~~~~~~~~~~e~e---~~~~~~~~k~k~~~e~~~~e~e~vl~~idn~~~~~~~~~~~~~~gka~~llk~ee~~~kl~~ 795 (953)
++++-..|+|+.|.| ||+-++.||+-.+ |..+++.+.-.
T Consensus 298 e~Enlqmr~qqleeentelRs~~arlksl~d--------------------------------------klaee~qr~sd 339 (502)
T KOG0982|consen 298 EKENLQMRDQQLEEENTELRSLIARLKSLAD--------------------------------------KLAEEDQRSSD 339 (502)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------------------------------------HHhhhhhhHHH
Q ss_pred HHHHHhhhhhhhHHHhhhhhhhhccchhhHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHhchhhHHHHHHHHh
Q 002212 796 ELKLCRERLGVVKREFEDLTKKSWKIDSDLQTVQMEIQKSSRSVEEMELAHQAVLQEQEALLEIREKGKTEIESMILEYM 875 (953)
Q Consensus 796 e~k~~~e~l~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~ 875 (953)
.+...|.+|+.-++.-.-|+- .|-+|.++++..+|+.+.|.++.+++=..--
T Consensus 340 ~LE~lrlql~~eq~l~~rm~d----------------------------~Lrrfq~ekeatqELieelrkelehlr~~kl 391 (502)
T KOG0982|consen 340 LLEALRLQLICEQKLRVRMND----------------------------ILRRFQEEKEATQELIEELRKELEHLRRRKL 391 (502)
T ss_pred HHHHHHHHHHHHHHHHHHHHH----------------------------HHHHHHHhhHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred hhhhhhhhhHHHHHHHHHHHHHHHHhh
Q 002212 876 QHVFEADLKEAEMRIVEEELQLELRRM 902 (953)
Q Consensus 876 ~~~f~~~l~~~e~~~~~e~l~~~~~~~ 902 (953)
.|--.+--... +-+.||..+..|+
T Consensus 392 ~~a~p~rgrsS---aRe~eleqevkrL 415 (502)
T KOG0982|consen 392 VLANPVRGRSS---AREIELEQEVKRL 415 (502)
T ss_pred HhhccccCchh---HHHHHHHHHHHHh
No 136
>PF15066 CAGE1: Cancer-associated gene protein 1 family
Probab=57.68 E-value=4.2e+02 Score=32.32 Aligned_cols=30 Identities=20% Similarity=0.268 Sum_probs=16.3
Q ss_pred HHhhhhHHHHHHHHHHHHHHHHHHhhccCc
Q 002212 372 KQLEFSLDEKEKLERHVSDLVKKLEEQTCP 401 (953)
Q Consensus 372 k~l~~clEen~kl~r~i~~L~~el~~~~~~ 401 (953)
.-|..--.+++.-+.+.=.|+.+++.+.+.
T Consensus 478 SALdlLkrEKe~~EqefLslqeEfQk~eke 507 (527)
T PF15066_consen 478 SALDLLKREKETREQEFLSLQEEFQKHEKE 507 (527)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 444444455555555556666666655443
No 137
>COG0419 SbcC ATPase involved in DNA repair [DNA replication, recombination, and repair]
Probab=56.79 E-value=5.4e+02 Score=33.06 Aligned_cols=52 Identities=13% Similarity=0.206 Sum_probs=27.6
Q ss_pred HHHHHHHHHhhhhhhhhhhhhhHHHHhhhHhhhhhhhHhhhhhHHHHHHhhhhh
Q 002212 597 LKLEKAQEKLSDSANTITLFGSVEKAFAEVDKLSGDIVAMEDSIQAKQQQCGSL 650 (953)
Q Consensus 597 ~k~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 650 (953)
..+......+....... ...++......+.+...++.........+.....+
T Consensus 501 ~e~~~l~~~l~~~~~~~--~~~~~~~~~~~~~~~~~~e~l~~~~e~~~~~~~~~ 552 (908)
T COG0419 501 EEIEELEKELRELEEEL--IELLELEEALKEELEEKLEKLENLLEELEELKEKL 552 (908)
T ss_pred HHHHHHHHHHHHHHHHH--HHHHhHHHHhHHHHHHHHHHHHHHHHHHHhHHHHH
Confidence 33444444444433332 34555556666666666666666666555555553
No 138
>KOG4674 consensus Uncharacterized conserved coiled-coil protein [Function unknown]
Probab=56.69 E-value=7.6e+02 Score=34.77 Aligned_cols=87 Identities=23% Similarity=0.324 Sum_probs=52.0
Q ss_pred HhhhHHHHHHHhhhhhhhHHHhhhhhhhhccchh--------------hHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHH
Q 002212 790 KTKLQTELKLCRERLGVVKREFEDLTKKSWKIDS--------------DLQTVQMEIQKSSRSVEEMELAHQAVLQEQEA 855 (953)
Q Consensus 790 ~~kl~~e~k~~~e~l~~~~~e~~~~~~~~~~~~~--------------~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~ 855 (953)
.+|+-.+.-++++++-++.+.|+...+..+-++. .+..+-.|+-.|-.-+.=.+..+...=+|+..
T Consensus 677 l~k~~~~~~fA~ekle~L~~~ie~~K~e~~tL~er~~~l~~~i~~~~q~~~~~s~eL~~a~~k~~~le~ev~~LKqE~~l 756 (1822)
T KOG4674|consen 677 LEKLKNELNLAKEKLENLEKNLELTKEEVETLEERNKNLQSTISKQEQTVHTLSQELLSANEKLEKLEAELSNLKQEKLL 756 (1822)
T ss_pred HHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHH
Confidence 3455555667777777777777766555443332 22333444444444445556677777777777
Q ss_pred HHHHHHhchhhHHHHHHHHhh
Q 002212 856 LLEIREKGKTEIESMILEYMQ 876 (953)
Q Consensus 856 ~~e~~~~~~~~~~~~~~~~~~ 876 (953)
+..--+.=..+.+.+.-+|+-
T Consensus 757 l~~t~~rL~~e~~~l~~e~~~ 777 (1822)
T KOG4674|consen 757 LKETEERLSQELEKLSAEQES 777 (1822)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 776666666666666666543
No 139
>COG0419 SbcC ATPase involved in DNA repair [DNA replication, recombination, and repair]
Probab=56.25 E-value=5.5e+02 Score=32.99 Aligned_cols=81 Identities=23% Similarity=0.324 Sum_probs=39.4
Q ss_pred HHHHHHhhhhhhhHHHhhhhhhhhccchhhHHHH-----HHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHhchhhHHH
Q 002212 795 TELKLCRERLGVVKREFEDLTKKSWKIDSDLQTV-----QMEIQKSSRSVEEMELAHQAVLQEQEALLEIREKGKTEIES 869 (953)
Q Consensus 795 ~e~k~~~e~l~~~~~e~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~e~~~~~~~~~~~~~~~~e~~~~~~~~~~~ 869 (953)
.+++.-|++++-+.+-+..+......++..++.. ..+++..+..+.+.--.++ .+ ..+-++......++..
T Consensus 586 ~~l~~~r~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~e~~~~~~~l~~~~~~l~--~~--~~~~~~~~~~l~~~~~ 661 (908)
T COG0419 586 EELEELRERLKELKKKLKELEERLSQLEELLQSLELSEAENELEEAEEELESELEKLN--LQ--AELEELLQAALEELEE 661 (908)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHH--hH--HHHHHHHHHHHHHHHH
Confidence 5666666666666665555555555666666665 3344444444433333333 11 2333333333445555
Q ss_pred HHHHHhhhhh
Q 002212 870 MILEYMQHVF 879 (953)
Q Consensus 870 ~~~~~~~~~f 879 (953)
.+..|-.-+.
T Consensus 662 ~~~~~~~~~~ 671 (908)
T COG0419 662 KVEELEAEIR 671 (908)
T ss_pred HHHHHHHHHH
Confidence 5555444444
No 140
>KOG0946 consensus ER-Golgi vesicle-tethering protein p115 [Intracellular trafficking, secretion, and vesicular transport]
Probab=53.99 E-value=6.2e+02 Score=32.93 Aligned_cols=120 Identities=27% Similarity=0.298 Sum_probs=70.8
Q ss_pred HHHHHHHHHHHHHhHHHHHHHHHHhhcCCCchhhhHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHhhHhhhc
Q 002212 252 REDEIQGLKMRLRFREAGIKRLEAVASGKISAETHLLKEKEECLKEIESFYEGGEREMMSQQIMVLQNKLLEALDWKLMH 331 (953)
Q Consensus 252 REeeiqs~KM~LRfREdkI~rLE~l~~g~~sae~~Ll~Ene~L~eEIq~LqeegERE~lleeIs~Lqd~Lle~ld~k~~~ 331 (953)
-+.-+++.|-+|+..+-.|..++... ..|..|++.|.++++... -+...|..++.-|..+|--+
T Consensus 655 l~~~~~kyK~lI~~lD~~~e~lkQ~~-------~~l~~e~eeL~~~vq~~~--s~hsql~~q~~~Lk~qLg~~------- 718 (970)
T KOG0946|consen 655 LDDIQQKYKGLIRELDYQIENLKQME-------KELQVENEELEEEVQDFI--SEHSQLKDQLDLLKNQLGII------- 718 (970)
T ss_pred HHHHHHHHHHHHHHHhhHHHHHHHHH-------HHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHhccc-------
Confidence 34445667777777777777776533 467788888888888642 23445666666666665110
Q ss_pred cCCccccCCCCCCCcccchhhhHHHHHHHHhhHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHhhccCchhhhhhhh
Q 002212 332 ESDSSAVQEPGSPWRTSVNEENEFLRMQAIHNQAEMETLRKQLEFSLDEKEKLERHVSDLVKKLEEQTCPISAKEETQ 409 (953)
Q Consensus 332 e~~~v~~~~~~~~~~~s~~~Ene~Lr~~~~~~~~El~~~~k~l~~clEen~kl~r~i~~L~~el~~~~~~~~~~~~~~ 409 (953)
+.....+....++ ..+.-++++.-+.++.++.+.-+.++.+|.++..-....++.+
T Consensus 719 -----------~~~~~~~~q~~e~-----------~~t~~eel~a~~~e~k~l~~~q~~l~~~L~k~~~~~es~k~~~ 774 (970)
T KOG0946|consen 719 -----------SSKQRDLLQGAEA-----------SKTQNEELNAALSENKKLENDQELLTKELNKKNADIESFKATQ 774 (970)
T ss_pred -----------ccchhhHHhHHHh-----------ccCChHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHH
Confidence 0000011111111 1222345566667888888888888888887776666666655
No 141
>PF05622 HOOK: HOOK protein; InterPro: IPR008636 This family consists of several HOOK1, 2 and 3 proteins from different eukaryotic organisms. The different members of the Homo sapiens gene family are HOOK1, HOOK2 and HOOK3. Different domains have been identified in the three Homo sapiens HOOK proteins, and it was demonstrated that the highly conserved NH2-domain mediates attachment to microtubules, whereas the central coiled-coil motif mediates homodimerisation and the more divergent C-terminal domains are involved in binding to specific organelles (organelle-binding domains). It has been demonstrated that endogenous HOOK3 binds to Golgi membranes [], whereas both HOOK1 and HOOK2 are localised to discrete but unidentified cellular structures. In mice the Hook1 gene is predominantly expressed in the testis. Hook1 function is necessary for the correct positioning of microtubular structures within the haploid germ cell. Disruption of Hook1 function in mice causes abnormal sperm head shape and fragile attachment of the flagellum to the sperm head [].; GO: 0008017 microtubule binding, 0000226 microtubule cytoskeleton organization, 0005737 cytoplasm; PDB: 1WIX_A.
Probab=53.28 E-value=6.9 Score=48.03 Aligned_cols=39 Identities=36% Similarity=0.455 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHhhHHHHHhhhHHHH
Q 002212 502 EMEMKREAENLELQLAEMNEENEKLLGLYEKAMQERDEF 540 (953)
Q Consensus 502 ~~~~~~~~~~L~~ql~e~~~en~kl~~lye~am~e~d~~ 540 (953)
..+.+.+++.++..+.++..+|+.|+..-+.|=.=|||+
T Consensus 262 ~~d~~~~~e~le~ei~~L~q~~~eL~~~A~~a~~LrDEl 300 (713)
T PF05622_consen 262 RDDLKIELEELEKEIDELRQENEELQAEAREARALRDEL 300 (713)
T ss_dssp ---------------------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhH
Confidence 456666777777888888888888877666665555543
No 142
>PF13870 DUF4201: Domain of unknown function (DUF4201)
Probab=52.83 E-value=1.6e+02 Score=30.18 Aligned_cols=96 Identities=16% Similarity=0.259 Sum_probs=57.1
Q ss_pred HHHHHhhhhhhhHHHhhhhhhhhccchhhHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHH-HhchhhHHHHHHHH
Q 002212 796 ELKLCRERLGVVKREFEDLTKKSWKIDSDLQTVQMEIQKSSRSVEEMELAHQAVLQEQEALLEIR-EKGKTEIESMILEY 874 (953)
Q Consensus 796 e~k~~~e~l~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~e~~-~~~~~~~~~~~~~~ 874 (953)
-+.--||||..+..++..+.......+..+..+..++..+- ....+.-. ...+++ .+|....-.++-||
T Consensus 78 ~L~h~keKl~~~~~~~~~l~~~l~~~~~~~~~~r~~l~~~k-------~~r~k~~~---~~~~l~~~~~~~~~P~ll~Dy 147 (177)
T PF13870_consen 78 ILTHVKEKLHFLSEELERLKQELKDREEELAKLREELYRVK-------KERDKLRK---QNKKLRQQGGLLGVPALLRDY 147 (177)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHH---HHHHHHHhcCCCCCcHHHHHH
Confidence 34445777777777777666655555555555555544332 22222222 233444 45556777888899
Q ss_pred hhhhhhhhhhHHHHHHHHHHHHHHHHh
Q 002212 875 MQHVFEADLKEAEMRIVEEELQLELRR 901 (953)
Q Consensus 875 ~~~~f~~~l~~~e~~~~~e~l~~~~~~ 901 (953)
..++=.++-....++.++..+..-.++
T Consensus 148 ~~~~~~~~~l~~~i~~l~rk~~~l~~~ 174 (177)
T PF13870_consen 148 DKTKEEVEELRKEIKELERKVEILEMR 174 (177)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 999888877777777777665544433
No 143
>COG1340 Uncharacterized archaeal coiled-coil protein [Function unknown]
Probab=51.80 E-value=4.2e+02 Score=30.38 Aligned_cols=79 Identities=13% Similarity=0.225 Sum_probs=62.3
Q ss_pred hhHHHHHHHHHHHHHHhhhhhhhhhhhhhHHHHhhhHhhhhhhhHhhhhhHHHHHHhhhhhhHHhhHHHHhHHHHHhHH
Q 002212 590 EDLNLVRLKLEKAQEKLSDSANTITLFGSVEKAFAEVDKLSGDIVAMEDSIQAKQQQCGSLKHLCSEMQERKALVDNKL 668 (953)
Q Consensus 590 ~~l~~~~~k~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~k~ 668 (953)
.-+.-.+..|+.++..+....++-.++.-+..--.++.++..+|+.....+|.++.+|.-+-...+++..+..-+-.+|
T Consensus 138 q~I~~L~k~le~~~k~~e~~~~~~el~aei~~lk~~~~e~~eki~~la~eaqe~he~m~k~~~~~De~Rkeade~he~~ 216 (294)
T COG1340 138 QKIKELRKELEDAKKALEENEKLKELKAEIDELKKKAREIHEKIQELANEAQEYHEEMIKLFEEADELRKEADELHEEF 216 (294)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344466677777777777778877788777888888999999999999999999999888888888777766655555
No 144
>PF05278 PEARLI-4: Arabidopsis phospholipase-like protein (PEARLI 4); InterPro: IPR007942 This family contains several phospholipase-like proteins from Arabidopsis thaliana and other members of the Streptophyta which are homologous to PEARLI 4.
Probab=51.04 E-value=67 Score=36.08 Aligned_cols=96 Identities=14% Similarity=0.222 Sum_probs=76.3
Q ss_pred hhHHHHHHHHHHHHHHhhhhhhhhhhhhhHHHHhhhHhhhhhhhHhhhhhHHHHHHhhhhhhHHhhHHHHhHHHHHhHHH
Q 002212 590 EDLNLVRLKLEKAQEKLSDSANTITLFGSVEKAFAEVDKLSGDIVAMEDSIQAKQQQCGSLKHLCSEMQERKALVDNKLM 669 (953)
Q Consensus 590 ~~l~~~~~k~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~k~~ 669 (953)
.||..|..++.=.+.+|.....++.++.--+++..+.+..-+.+...+..+...+.++......+.++.+|-+..-.+|+
T Consensus 159 ~DLesa~vkV~WLR~~L~Ei~Ea~e~~~~~~~~e~eke~~~r~l~~~~~ELe~~~EeL~~~Eke~~e~~~~i~e~~~rl~ 238 (269)
T PF05278_consen 159 KDLESAKVKVDWLRSKLEEILEAKEIYDQHETREEEKEEKDRKLELKKEELEELEEELKQKEKEVKEIKERITEMKGRLG 238 (269)
T ss_pred HHHHHcCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 46667777777788888888888888988899999988888999988888888888888888888888888888888887
Q ss_pred hhhhhcccccchhhHH
Q 002212 670 ALKYSLSSFSSSAAYF 685 (953)
Q Consensus 670 ~~~~~~~~f~~~~~~~ 685 (953)
-|+.--+-.+-...|+
T Consensus 239 ~l~~~~~~l~k~~~~~ 254 (269)
T PF05278_consen 239 ELEMESTRLSKTIKSI 254 (269)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 7766554444444443
No 145
>PF15294 Leu_zip: Leucine zipper
Probab=49.58 E-value=3.1e+02 Score=31.21 Aligned_cols=97 Identities=30% Similarity=0.351 Sum_probs=53.2
Q ss_pred hhhhhh--hHHHHHHHHHHH-HHHHhhH--hhhccCCccccCCCCCCCcccchhh--hHHHHHHHHhhH-------HHHH
Q 002212 303 EGGERE--MMSQQIMVLQNK-LLEALDW--KLMHESDSSAVQEPGSPWRTSVNEE--NEFLRMQAIHNQ-------AEME 368 (953)
Q Consensus 303 eegERE--~lleeIs~Lqd~-Lle~ld~--k~~~e~~~v~~~~~~~~~~~s~~~E--ne~Lr~~~~~~~-------~El~ 368 (953)
.++|+- .+-..|+.|.++ |++.+.. +.++-+.+-+......|.+..+.+. ...|..++...+ .=+.
T Consensus 70 ~qAek~~lkl~~diselEn~eLLe~i~~~E~~~~~~~~~~~~~~~~~KL~pl~e~g~~~ll~kEi~rLq~EN~kLk~rl~ 149 (278)
T PF15294_consen 70 SQAEKWYLKLQTDISELENRELLEQIAEFEKQEFTSSFKPNQETSKPKLEPLNESGGSELLNKEIDRLQEENEKLKERLK 149 (278)
T ss_pred HHHHHHHHHhcccHHHHHHHHHHHHHHHHHHhhhcccCCccccccccccccccccchHHHHHHHHHHHHHHHHHHHHHHH
Confidence 678877 666678888886 5554432 2222222200011111122221111 111333333333 5566
Q ss_pred HHHHHhhhhHHHHHHHHHHHHHHHHHHhhcc
Q 002212 369 TLRKQLEFSLDEKEKLERHVSDLVKKLEEQT 399 (953)
Q Consensus 369 ~~~k~l~~clEen~kl~r~i~~L~~el~~~~ 399 (953)
++.+.-+.+++++.++.+.+++|+.....++
T Consensus 150 ~le~~at~~l~Ek~kl~~~L~~lq~~~~~~~ 180 (278)
T PF15294_consen 150 SLEKQATSALDEKSKLEAQLKELQDEQGDQK 180 (278)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 6666888999999999999999998555443
No 146
>PF04156 IncA: IncA protein; InterPro: IPR007285 Chlamydia trachomatis is an obligate intracellular bacterium that develops within a parasitophorous vacuole termed an inclusion. The inclusion is nonfusogenic with lysosomes but intercepts lipids from a host cell exocytic pathway. Initiation of chlamydial development is concurrent with modification of the inclusion membrane by a set of C. trachomatis-encoded proteins collectively designated Incs. One of these Incs, IncA (Inclusion membrane protein A), is functionally associated with the homotypic fusion of inclusions [].
Probab=49.45 E-value=3.1e+02 Score=28.09 Aligned_cols=46 Identities=22% Similarity=0.437 Sum_probs=36.1
Q ss_pred hhhHHHHHHHhhhhhhhHHHhhhhhhhhccchhhHHHHHHHHHhhh
Q 002212 791 TKLQTELKLCRERLGVVKREFEDLTKKSWKIDSDLQTVQMEIQKSS 836 (953)
Q Consensus 791 ~kl~~e~k~~~e~l~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~ 836 (953)
+.++.|+..+...+....+|++++.++.....+++..++.+.....
T Consensus 77 ~~~~~e~~~~~~~l~~l~~el~~l~~~~~~~~~~l~~~~~~~~~~~ 122 (191)
T PF04156_consen 77 PRLQGELSELQQQLQQLQEELDQLQERIQELESELEKLKEDLQELR 122 (191)
T ss_pred hhhhhhHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhH
Confidence 6778899999999999999999988877777777666666555554
No 147
>PRK09039 hypothetical protein; Validated
Probab=49.24 E-value=3.4e+02 Score=31.16 Aligned_cols=43 Identities=21% Similarity=0.244 Sum_probs=25.4
Q ss_pred hhHhhhHhHhHhhHHHHHHhhhhhhhHHHHHHhHHHHHhHhHH
Q 002212 705 QKKEQLVHLECCKREIEDALGKVQRSEAELRNNLALLKSKLEE 747 (953)
Q Consensus 705 ~k~~~l~~l~~~k~~~~~~~~~~~~~e~e~~~~~~~~k~k~~~ 747 (953)
.-+.|++.|+..-..+++++.-..+-..+.+..|+.|+.+|+.
T Consensus 141 ~L~~qI~aLr~Qla~le~~L~~ae~~~~~~~~~i~~L~~~L~~ 183 (343)
T PRK09039 141 LLNQQIAALRRQLAALEAALDASEKRDRESQAKIADLGRRLNV 183 (343)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344555555555555555555555556667777777776665
No 148
>PF01920 Prefoldin_2: Prefoldin subunit; InterPro: IPR002777 Prefoldin (PFD) is a chaperone that interacts exclusively with type II chaperonins, hetero-oligomers lacking an obligate co-chaperonin that are found only in eukaryotes (chaperonin-containing T-complex polypeptide-1 (CCT)) and archaea. Eukaryotic PFD is a multi-subunit complex containing six polypeptides in the molecular mass range of 14-23 kDa. In archaea, on the other hand, PFD is composed of two types of subunits, two alpha and four beta. The six subunits associate to form two back-to-back up-and-down eight-stranded barrels, from which hang six coiled coils. Each subunit contributes one (beta subunits) or two (alpha subunits) beta hairpin turns to the barrels. The coiled coils are formed by the N and C termini of an individual subunit. Overall, this unique arrangement resembles a jellyfish. The eukaryotic PFD hexamer is composed of six different subunits; however, these can be grouped into two alpha-like (PFD3 and -5) and four beta-like (PFD1, -2, -4, and -6) subunits based on amino acid sequence similarity with their archaeal counterparts. Eukaryotic PFD has a six-legged structure similar to that seen in the archaeal homologue [, ]. This family contains the archaeal beta subunit, eukaryotic prefoldin subunits 1, 2, 4 and 6. Eukaryotic PFD has been shown to bind both actin and tubulin co-translationally. The chaperone then delivers the target protein to CCT, interacting with the chaperonin through the tips of the coiled coils. No authentic target proteins of any archaeal PFD have been identified, to date.; GO: 0051082 unfolded protein binding, 0006457 protein folding, 0016272 prefoldin complex; PDB: 2ZDI_B 3AEI_B 2ZQM_A 1FXK_A.
Probab=48.67 E-value=20 Score=32.81 Aligned_cols=65 Identities=18% Similarity=0.328 Sum_probs=35.1
Q ss_pred eeccccccCCcccccccccchhhhhccHHHHhhhHHHHHHHhhhhhhhHHHhhhhhhhhccchhhHHHHHHH
Q 002212 760 AIDNIEKVDHPQRNWNLGGKATELLKSEEEKTKLQTELKLCRERLGVVKREFEDLTKKSWKIDSDLQTVQME 831 (953)
Q Consensus 760 ~idn~~~~~~~~~~~~~~gka~~llk~ee~~~kl~~e~k~~~e~l~~~~~e~~~~~~~~~~~~~~~~~~~~~ 831 (953)
+++-+..+|++.+-|...|++.=.-..++-...|...++... .+|+.|.++...++.++..++..
T Consensus 34 ~~~eL~~l~~~~~~y~~vG~~fv~~~~~~~~~~L~~~~~~~~-------~~i~~l~~~~~~l~~~l~~~~~~ 98 (106)
T PF01920_consen 34 TLEELEKLDDDRKVYKSVGKMFVKQDKEEAIEELEERIEKLE-------KEIKKLEKQLKYLEKKLKELKKK 98 (106)
T ss_dssp HHHHHHTSSTT-EEEEEETTEEEEEEHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhCCCcchhHHHHhHHHHHhhHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHH
Confidence 445566777888899999998655554544444444444333 34444444444444444444433
No 149
>PF08614 ATG16: Autophagy protein 16 (ATG16); InterPro: IPR013923 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells. In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. This entry represents auotphagy protein 16 (Apg16), which is required for the function of the Apg12p-Apg5p conjugate.; PDB: 3A7O_D 3A7P_B.
Probab=47.15 E-value=1.4e+02 Score=31.30 Aligned_cols=150 Identities=18% Similarity=0.127 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHhhhcCCCCccCCCCCCCCCCCCCCCCcccccccccCcchhhhhhhhhhhHHHHHHHHhhhhhhh
Q 002212 152 MRMEIQQLKKEVSRLRGIAHGGAESLVNDSPTVSFPGSPGSIKWEGLHESFSPLISDKRMSQKKDYELALVGAFRREKEK 231 (953)
Q Consensus 152 Lr~eIq~LK~ELsrLR~~l~~~~e~~~~~~~~~s~~~spg~~~~~~l~~~~s~l~~~~r~~q~~~~e~~lv~a~RrekEk 231 (953)
|-..+..|+.+...+.........+....+++.+.+.+.....+.. ........+..++|.-.+-
T Consensus 29 L~d~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~le~---------------~~~~l~~ELael~r~~~el 93 (194)
T PF08614_consen 29 LADRTSLLKAENEQLQPEAESLPSSSSSSPSESGSVSSAQISSLEQ---------------KLAKLQEELAELYRSKGEL 93 (194)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred cccccccccccccccccccccccccccccccccccccccccccccc---------------ccccccccccccccccccc
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHhhcCCCchhhhHHHHHHHHHHHHHHHh-----hhhh
Q 002212 232 DISLQALAAENQAALRLAKQREDEIQGLKMRLRFREAGIKRLEAVASGKISAETHLLKEKEECLKEIESFY-----EGGE 306 (953)
Q Consensus 232 e~~LkkL~aEle~~~~Lv~qREeeiqs~KM~LRfREdkI~rLE~l~~g~~sae~~Ll~Ene~L~eEIq~Lq-----eegE 306 (953)
...+..+..+++.+......+...|..+...+..-+.+|..++..+ ...-.-++.+..|+..|+ .+..
T Consensus 94 ~~~L~~~~~~l~~l~~~~~~~~~~l~~l~~~~~~L~~~~~~l~~~l-------~ek~k~~e~l~DE~~~L~l~~~~~e~k 166 (194)
T PF08614_consen 94 AQQLVELNDELQELEKELSEKERRLAELEAELAQLEEKIKDLEEEL-------KEKNKANEILQDELQALQLQLNMLEEK 166 (194)
T ss_dssp --------------------HHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cccccccccccchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred hhhHHHHHHHHHHHHHH
Q 002212 307 REMMSQQIMVLQNKLLE 323 (953)
Q Consensus 307 RE~lleeIs~Lqd~Lle 323 (953)
...+..+=..|=++++.
T Consensus 167 ~~~l~~En~~Lv~Rwm~ 183 (194)
T PF08614_consen 167 LRKLEEENRELVERWMQ 183 (194)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH
No 150
>PF06005 DUF904: Protein of unknown function (DUF904); InterPro: IPR009252 Cell division protein ZapB is a non-essential, abundant cell division factor that is required for proper Z-ring formation. It is recruited early to the divisome by direct interaction with FtsZ, stimulating Z-ring assembly and thereby promoting cell division earlier in the cell cycle. Its recruitment to the Z-ring requires functional FtsA or ZipA.; GO: 0000917 barrier septum formation, 0043093 cytokinesis by binary fission, 0005737 cytoplasm; PDB: 2JEE_A.
Probab=47.08 E-value=1.5e+02 Score=27.14 Aligned_cols=59 Identities=29% Similarity=0.427 Sum_probs=36.2
Q ss_pred cHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHhhHHHHHhhhHHHHHHHHhh
Q 002212 477 NDELQLKHKVLIEEKSNLIELYERKEMEMKREAENLELQLAEMNEENEKLLGLYEKAMQERDEFKRMISL 546 (953)
Q Consensus 477 n~e~~~~~~~l~e~~~~l~~~~~~~~~~~~~~~~~L~~ql~e~~~en~kl~~lye~am~e~d~~~r~~~~ 546 (953)
.+.|..++..+++- |.+.+.++.++++....|......+.++|.+|. ++|..+.++|.+
T Consensus 6 l~~LE~ki~~avet----i~~Lq~e~eeLke~n~~L~~e~~~L~~en~~L~-------~e~~~~~~rl~~ 64 (72)
T PF06005_consen 6 LEQLEEKIQQAVET----IALLQMENEELKEKNNELKEENEELKEENEQLK-------QERNAWQERLRS 64 (72)
T ss_dssp HHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHH-------HHHHHHHHHHHH
Confidence 44555555555543 445555566666666666666666666666655 888888888754
No 151
>KOG0018 consensus Structural maintenance of chromosome protein 1 (sister chromatid cohesion complex Cohesin, subunit SMC1) [Cell cycle control, cell division, chromosome partitioning]
Probab=46.49 E-value=8.7e+02 Score=32.49 Aligned_cols=142 Identities=17% Similarity=0.272 Sum_probs=76.5
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHhhHHHHHhhhHHHHHHHHhhhcCCccccccccccccchhhccccc
Q 002212 492 SNLIELYERKEMEMKREAENLELQLAEMNEENEKLLGLYEKAMQERDEFKRMISLCGQNRAEASGEIYCPEKLVEIDGEA 571 (953)
Q Consensus 492 ~~l~~~~~~~~~~~~~~~~~L~~ql~e~~~en~kl~~lye~am~e~d~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 571 (953)
+.+.+=|+..+++.+..+..|..++.-+..+=.-+-+.-|+---||-.+ |+.|.- +++..|= ..|..
T Consensus 848 k~~~~~~~~e~~e~~k~~~~~~~~~tkl~~~i~~~es~ie~~~~er~~l---L~~ckl------~~I~vPl----~~gs~ 914 (1141)
T KOG0018|consen 848 KSKFEKKEDEINEVKKILRRLVKELTKLDKEITSIESKIERKESERHNL---LSKCKL------EDIEVPL----SSGSM 914 (1141)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhHHHHHHHHHHHH---HHHhhh------ccccccc----cCCCc
Confidence 3444555556666666666666665555555544455555555555544 333221 1222220 00100
Q ss_pred cccccchhhhchhhhhhhhhHHHHHHHHHHHHHHhhhhhhhhhhhhhHHHHhhhHhhhhhhhHhhhhhHHHHHHhhhhhh
Q 002212 572 AFADMETEQLNLANIKVTEDLNLVRLKLEKAQEKLSDSANTITLFGSVEKAFAEVDKLSGDIVAMEDSIQAKQQQCGSLK 651 (953)
Q Consensus 572 ~~~~~~~~~~~~~~~~~~~~l~~~~~k~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 651 (953)
+ |- +.+..+....+...+. .+.||+..++.|..-+--...+--++- +.+.+++.+.+++....+.-.++|+..|
T Consensus 915 ~--d~-~~~ieidy~~L~~~y~-L~~kl~e~~~~l~~~~Pn~kA~~~~d~--v~~~~~~~EfE~ark~ak~ak~~F~~VK 988 (1141)
T KOG0018|consen 915 D--DI-VIGIEIDYSGLPREYK-LQQKLEEKQSVLNRIAPNLKALERLDE--VRFQEINEEFEAARKEAKKAKNAFNKVK 988 (1141)
T ss_pred c--cc-ceecccccccccHHHH-HHHHHHHHHHHHHHhCcchHHHhhhhh--HHHHHhhHHHHHHHHHHHHHHHHHHHHH
Confidence 0 00 0022222223333333 677888888887776444444433333 3388999999999988888888888887
Q ss_pred H
Q 002212 652 H 652 (953)
Q Consensus 652 ~ 652 (953)
.
T Consensus 989 ~ 989 (1141)
T KOG0018|consen 989 K 989 (1141)
T ss_pred H
Confidence 5
No 152
>PF11559 ADIP: Afadin- and alpha -actinin-Binding; InterPro: IPR021622 This family is found in mammals where it is localised at cell-cell adherens junctions [], and in Sch. pombe and other fungi where it anchors spindle-pole bodies to spindle microtubules []. It is a coiled-coil structure, and in pombe, it is required for anchoring the minus end of spindle microtubules to the centrosome equivalent, the spindle-pole body. The name ADIP derives from the family being composed of Afadin- and alpha -Actinin-Binding Proteins Localised at Cell-Cell Adherens Junctions.
Probab=45.56 E-value=3.2e+02 Score=27.23 Aligned_cols=42 Identities=31% Similarity=0.406 Sum_probs=21.9
Q ss_pred cchhhhhhhHhhhHhHhHhhHHHHHHhhhhhhhHHHHHHh---HHHHHhHh
Q 002212 698 TSSTYLNQKKEQLVHLECCKREIEDALGKVQRSEAELRNN---LALLKSKL 745 (953)
Q Consensus 698 ~~~~~~~~k~~~l~~l~~~k~~~~~~~~~~~~~e~e~~~~---~~~~k~k~ 745 (953)
....-+..-|+++..++. ....+..+++.|+|.+ |+.||.+|
T Consensus 105 ~~~~~~k~~kee~~klk~------~~~~~~tq~~~e~rkke~E~~kLk~rL 149 (151)
T PF11559_consen 105 SLEAKLKQEKEELQKLKN------QLQQRKTQYEHELRKKEREIEKLKERL 149 (151)
T ss_pred HHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 333444555566655553 2333444666677653 55566554
No 153
>KOG0980 consensus Actin-binding protein SLA2/Huntingtin-interacting protein Hip1 [Cytoskeleton]
Probab=44.94 E-value=8.6e+02 Score=31.96 Aligned_cols=117 Identities=23% Similarity=0.248 Sum_probs=61.1
Q ss_pred HHHHHhHHHhhhhhcccccchhhHHHHHHHhhhhccccchhhhhhhHhhhHhHhHhhHHHHHHhhhhhhhHHHHHHhHHH
Q 002212 661 KALVDNKLMALKYSLSSFSSSAAYFEQRAARSRARVTTSSTYLNQKKEQLVHLECCKREIEDALGKVQRSEAELRNNLAL 740 (953)
Q Consensus 661 ~~~~~~k~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~l~~l~~~k~~~~~~~~~~~~~e~e~~~~~~~ 740 (953)
..++..++.-|.-+++|-+++-+-|-.+ +...+.+|--+.+.+-....|+++....++.|.-
T Consensus 503 l~~l~~e~~~lq~~~~~~~qs~~~~~~~----------l~~~l~~KD~~~~~~~~~~~e~~~~~~e~e~si~-------- 564 (980)
T KOG0980|consen 503 LALLLIELEELQRTLSNLAQSHNNQLAQ----------LEDLLKQKDRLAAELVAREEEREALRLEAERSIN-------- 564 (980)
T ss_pred HHHHHHHHHHHHHHhhhHHHHHHHHHHH----------HHHHHHhhHHHHHHHHHHHHHHHHHHHHHHhhHH--------
Confidence 3444555555666666665554433322 2234556666666666666667776666666611
Q ss_pred HHhHhHH-------Hhhhcccce--ee--------Eeecc-ccccCCcccccccccchhhhhccHHHHhhhHHHH
Q 002212 741 LKSKLEE-------ENRRQENEK--VL--------FAIDN-IEKVDHPQRNWNLGGKATELLKSEEEKTKLQTEL 797 (953)
Q Consensus 741 ~k~k~~~-------e~~~~e~e~--vl--------~~idn-~~~~~~~~~~~~~~gka~~llk~ee~~~kl~~e~ 797 (953)
+.+|++ ..|.+...+ +| =+|+| +...|+|++ |...|-++-||-..+.-+.--.++
T Consensus 565 -ql~l~~~~~~ea~~tQ~~~~~~~~il~~~~~~~~q~lq~al~~ld~P~~-~~~~~~p~~Llst~~~~s~n~~~~ 637 (980)
T KOG0980|consen 565 -QLELDSSASTEAGITQLQDDLNDPILDGSLASGIQALQNALYQLDSPLH-WRCLTSPDFLLSTAENASVNATQF 637 (980)
T ss_pred -HhhcccccchHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHhcCCCcc-cCcCCCHHHHHHHHHHHHHHHHHH
Confidence 112221 222222222 00 02333 335777876 588899988887776654433333
No 154
>KOG2129 consensus Uncharacterized conserved protein H4 [Function unknown]
Probab=44.80 E-value=6.5e+02 Score=30.50 Aligned_cols=31 Identities=29% Similarity=0.414 Sum_probs=18.4
Q ss_pred HhHHHHHHHhhHHHHHhhhHHHHHHHHhhhc
Q 002212 518 EMNEENEKLLGLYEKAMQERDEFKRMISLCG 548 (953)
Q Consensus 518 e~~~en~kl~~lye~am~e~d~~~r~~~~~~ 548 (953)
.|.+||..|-.+.-.-|.-|.-+-|++++..
T Consensus 289 ~~reen~rlQrkL~~e~erRealcr~lsEse 319 (552)
T KOG2129|consen 289 DHREENERLQRKLINELERREALCRMLSESE 319 (552)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHhhhhh
Confidence 3455566665555566666666666666543
No 155
>PF05377 FlaC_arch: Flagella accessory protein C (FlaC); InterPro: IPR008039 Although archaeal flagella appear superficially similar to those of bacteria, they are quite distinct []. In several archaea, the flagellin genes are followed immediately by the flagellar accessory genes flaCDEFGHIJ. The gene products may have a role in translocation, secretion, or assembly of the flagellum. FlaC is a protein whose exact role is unknown but it has been shown to be membrane-associated (by immuno-blotting fractionated cells) [].
Probab=44.44 E-value=82 Score=27.87 Aligned_cols=34 Identities=26% Similarity=0.413 Sum_probs=27.8
Q ss_pred HHHHHHHHHHHHHHHHHHhHHHHHHHhhHHHHHh
Q 002212 501 KEMEMKREAENLELQLAEMNEENEKLLGLYEKAM 534 (953)
Q Consensus 501 ~~~~~~~~~~~L~~ql~e~~~en~kl~~lye~am 534 (953)
.++-.+.+.+++...++++++-=.+||+|||-.-
T Consensus 15 ~i~tvk~en~~i~~~ve~i~envk~ll~lYE~Vs 48 (55)
T PF05377_consen 15 SINTVKKENEEISESVEKIEENVKDLLSLYEVVS 48 (55)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4677777888888888888888899999999653
No 156
>PF09738 DUF2051: Double stranded RNA binding protein (DUF2051); InterPro: IPR019139 This entry represents transcriptional repressors which preferentially bind to the GC-rich consensus sequence (5'-AGCCCCCGGCG-3') and may regulate expression of TNF, EGFR and PDGFA. They may control smooth muscle cell proliferation following artery injury through PDGFA repression and may also bind double-stranded RNA. They interact with the leucine-rich repeat domain of human flightless-I (FliI) protein.
Probab=43.08 E-value=3.8e+02 Score=30.68 Aligned_cols=135 Identities=26% Similarity=0.298 Sum_probs=78.5
Q ss_pred cchhhhHHHHHHHHhhHHHHHHHHHHhhhhHHH-------HHHHHHHHHHHHHHHhhccCchhhhhhhh---cccccCCC
Q 002212 348 SVNEENEFLRMQAIHNQAEMETLRKQLEFSLDE-------KEKLERHVSDLVKKLEEQTCPISAKEETQ---GFQLSTNV 417 (953)
Q Consensus 348 s~~~Ene~Lr~~~~~~~~El~~~~k~l~~clEe-------n~kl~r~i~~L~~el~~~~~~~~~~~~~~---~~~~~~~~ 417 (953)
.++||-..|.-|+.-.++.|+++...+.....+ -+++-+.++.|+.++...|..+.+....+ |+-+-++
T Consensus 102 QLDNek~~l~yqvd~Lkd~lee~eE~~~~~~re~~eK~~elEr~K~~~d~L~~e~~~Lre~L~~rdeli~khGlVlv~~- 180 (302)
T PF09738_consen 102 QLDNEKSALMYQVDLLKDKLEELEETLAQLQREYREKIRELERQKRAHDSLREELDELREQLKQRDELIEKHGLVLVPD- 180 (302)
T ss_pred hhchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCeeeCCC-
Confidence 477888888867666666666655444333322 34555566667777777776665444333 2223222
Q ss_pred ccccchhhHHHH-HHHHHHHHhhhhHHHhhhhhhhccccchhhHHHHHHHHhhhhhhhhccHHHHHHHHHHHHhhhhhhH
Q 002212 418 PTINFDDQVELK-TMVDAIAVASQREAEAHQTAIGLSKMHDELRLELEVLNKEKSEFNKLNDELQLKHKVLIEEKSNLIE 496 (953)
Q Consensus 418 ~~~~~~~q~e~k-t~v~aia~asq~~~e~~~~~i~l~k~~~~~~~~~e~~~~~~~e~~~ln~e~~~~~~~l~e~~~~l~~ 496 (953)
.-|.+...++- .=+-+++..||-.+.+-+.+ | +--|+..|+-|+++++.|.+
T Consensus 181 -~~ngd~~~~~~~~~~~~~~~vs~e~a~~L~~a-----G---------------------~g~LDvRLkKl~~eke~L~~ 233 (302)
T PF09738_consen 181 -ATNGDTSDEPNNVGHPKRALVSQEAAQLLESA-----G---------------------DGSLDVRLKKLADEKEELLE 233 (302)
T ss_pred -CCCCccccCccccCCCcccccchhhhhhhccc-----C---------------------CCCHHHHHHHHHHHHHHHHH
Confidence 11122211100 00456777788888777766 3 33678888889888776654
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhHH
Q 002212 497 LYERKEMEMKREAENLELQLAEMNE 521 (953)
Q Consensus 497 ~~~~~~~~~~~~~~~L~~ql~e~~~ 521 (953)
+|..|..||.+...
T Consensus 234 -----------qv~klk~qLee~~~ 247 (302)
T PF09738_consen 234 -----------QVRKLKLQLEERQS 247 (302)
T ss_pred -----------HHHHHHHHHHHHHh
Confidence 57777778776543
No 157
>PF08581 Tup_N: Tup N-terminal; InterPro: IPR013890 The N-terminal region of the Tup protein has been shown to interact with the Ssn6 transcriptional co-repressor []. ; PDB: 3VP9_B 3VP8_B.
Probab=43.07 E-value=72 Score=29.74 Aligned_cols=52 Identities=27% Similarity=0.434 Sum_probs=44.5
Q ss_pred hhhhhhHHHhhhhhh-------hhccchhhHHHHHHHHHhhhhhHHHHHHHHHHHHHHH
Q 002212 802 ERLGVVKREFEDLTK-------KSWKIDSDLQTVQMEIQKSSRSVEEMELAHQAVLQEQ 853 (953)
Q Consensus 802 e~l~~~~~e~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~ 853 (953)
|=|..||.||+.+++ -.++.|.+|+.--.||+.-=.++-++|..+.++-..+
T Consensus 4 elLd~ir~Ef~~~~~e~~~~k~~~~e~e~ki~~Qi~Em~~ir~~v~eLE~~h~kmK~~Y 62 (79)
T PF08581_consen 4 ELLDAIRQEFENLSQEANSYKHQKDEYEHKINSQIQEMQQIRQKVYELEQAHRKMKQQY 62 (79)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 457889999999998 7888999999999999999899999888888776655
No 158
>PF12325 TMF_TATA_bd: TATA element modulatory factor 1 TATA binding; InterPro: IPR022091 This is the C-terminal conserved coiled coil region of a family of TATA element modulatory factor 1 proteins conserved in eukaryotes []. The proteins bind to the TATA element of some RNA polymerase II promoters and repress their activity. by competing with the binding of TATA binding protein. TMF1_TATA_bd is the most conserved part of the TMFs []. TMFs are evolutionarily conserved golgins that bind Rab6, a ubiquitous ras-like GTP-binding Golgi protein, and contribute to Golgi organisation in animal [] and plant cells. The Rab6-binding domain appears to be the same region as this C-terminal family [].
Probab=42.80 E-value=2.3e+02 Score=28.26 Aligned_cols=71 Identities=21% Similarity=0.318 Sum_probs=52.3
Q ss_pred hhhHHHHHHHhhhhhhhHHHhhhhhhhhccchhhHHHHHHHH---HhhhhhHHHHHHHHHHHHHHHHHHHHHHH
Q 002212 791 TKLQTELKLCRERLGVVKREFEDLTKKSWKIDSDLQTVQMEI---QKSSRSVEEMELAHQAVLQEQEALLEIRE 861 (953)
Q Consensus 791 ~kl~~e~k~~~e~l~~~~~e~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~e~~~~~~~~~~~~~~~~e~~~ 861 (953)
.+|++.++...-.+..++.++..+.+.-+....+|-.+-.+. ......+..++..++..=..++|+++|.-
T Consensus 19 e~L~s~lr~~E~E~~~l~~el~~l~~~r~~l~~Eiv~l~~~~e~~~~~~~~~~~L~~el~~l~~ry~t~LellG 92 (120)
T PF12325_consen 19 ERLQSQLRRLEGELASLQEELARLEAERDELREEIVKLMEENEELRALKKEVEELEQELEELQQRYQTLLELLG 92 (120)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 468888888888888888888888777777777777766665 44455666677777777777778887753
No 159
>PF10146 zf-C4H2: Zinc finger-containing protein ; InterPro: IPR018482 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents a family of proteins which appears to have a highly conserved zinc finger domain at the C-terminal end, described as -C-X2-CH-X3-H-X5-C-X2-C-. The structure is predicted to contain a coiled coil. Members of this family are annotated as being tumour-associated antigen HCA127 in humans, but this could not be confirmed.
Probab=39.77 E-value=3e+02 Score=30.24 Aligned_cols=43 Identities=14% Similarity=0.186 Sum_probs=36.4
Q ss_pred HHHHHHHHHHHHHHHHHHhHHHHHHHhhHHHHHhhhHHHHHHH
Q 002212 501 KEMEMKREAENLELQLAEMNEENEKLLGLYEKAMQERDEFKRM 543 (953)
Q Consensus 501 ~~~~~~~~~~~L~~ql~e~~~en~kl~~lye~am~e~d~~~r~ 543 (953)
-++.++..++.++.....+-..=..+++-|...+.+=|++++-
T Consensus 61 DIn~lE~iIkqa~~er~~~~~~i~r~~eey~~Lk~~in~~R~e 103 (230)
T PF10146_consen 61 DINTLENIIKQAESERNKRQEKIQRLYEEYKPLKDEINELRKE 103 (230)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5678888888888888888888888999999998888888665
No 160
>KOG4673 consensus Transcription factor TMF, TATA element modulatory factor [Transcription]
Probab=38.34 E-value=9.9e+02 Score=30.78 Aligned_cols=124 Identities=20% Similarity=0.148 Sum_probs=75.8
Q ss_pred HHHHHHHHHHHHHhhccCchhhhhhhhcccccCCCccccchhhHHHHHHHHHHHHhhhhHHHhhhhhhhccccchhhHHH
Q 002212 383 KLERHVSDLVKKLEEQTCPISAKEETQGFQLSTNVPTINFDDQVELKTMVDAIAVASQREAEAHQTAIGLSKMHDELRLE 462 (953)
Q Consensus 383 kl~r~i~~L~~el~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~e~kt~v~aia~asq~~~e~~~~~i~l~k~~~~~~~~ 462 (953)
=|.|.|..|+.-|...-.+-+..+.....+ ..+.|+-|...|.-=..+-| |.--+.|+|.-+
T Consensus 641 PLlRQIE~lQ~tl~~~~tawereE~~l~~r--------L~dSQtllr~~v~~eqgekq---ElL~~~~~l~s~------- 702 (961)
T KOG4673|consen 641 PLLRQIEALQETLSKAATAWEREERSLNER--------LSDSQTLLRINVLEEQGEKQ---ELLSLNFSLPSS------- 702 (961)
T ss_pred HHHHHHHHHHHHHhhhhhHHHHHHHHHHHh--------hhhHHHHHHHHHHHHhhhHH---HHHHHhcCCCcc-------
Confidence 467899999988888777666555554222 33457666555543333322 455567777776
Q ss_pred HHHHHhhhhhhhhccHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHhhHHHHHhhhHHHHHH
Q 002212 463 LEVLNKEKSEFNKLNDELQLKHKVLIEEKSNLIELYERKEMEMKREAENLELQLAEMNEENEKLLGLYEKAMQERDEFKR 542 (953)
Q Consensus 463 ~e~~~~~~~e~~~ln~e~~~~~~~l~e~~~~l~~~~~~~~~~~~~~~~~L~~ql~e~~~en~kl~~lye~am~e~d~~~r 542 (953)
+++ +-.|.-++..+-.. ...-+.+..++..++....+|-+-|-|=|-..-+|=.++||
T Consensus 703 ----------------~~q--~sllraE~~~l~~~----le~e~nr~~~~~~e~~~~qeE~~~l~~r~~~le~e~r~~k~ 760 (961)
T KOG4673|consen 703 ----------------PIQ--LSLLRAEQGQLSKS----LEKERNRAAENRQEYLAAQEEADTLEGRANQLEVEIRELKR 760 (961)
T ss_pred ----------------hhH--HHHHHHHHHHHHHH----HHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 332 23344444433333 22233356677777777777888888888777788778888
Q ss_pred HHhh
Q 002212 543 MISL 546 (953)
Q Consensus 543 ~~~~ 546 (953)
..-.
T Consensus 761 ~~~q 764 (961)
T KOG4673|consen 761 KHKQ 764 (961)
T ss_pred HHHH
Confidence 7744
No 161
>PF07798 DUF1640: Protein of unknown function (DUF1640); InterPro: IPR024461 This family consists of uncharacterised proteins.
Probab=37.88 E-value=1e+02 Score=31.80 Aligned_cols=50 Identities=22% Similarity=0.230 Sum_probs=28.5
Q ss_pred HhhhhccccchhhhhhhHhhhHhHhHhhHHHHHHhhhhhhhHHHHHHhHH
Q 002212 690 ARSRARVTTSSTYLNQKKEQLVHLECCKREIEDALGKVQRSEAELRNNLA 739 (953)
Q Consensus 690 ~~~~~~~~~~~~~~~~k~~~l~~l~~~k~~~~~~~~~~~~~e~e~~~~~~ 739 (953)
.+|++-+.+..+.++..-+-+..--+.|.+++...-.....-++||.-+.
T Consensus 19 ~QAe~i~~~l~~~l~~~~~~~~~~~vtk~d~e~~~~~~~a~~~eLr~el~ 68 (177)
T PF07798_consen 19 EQAEAIMKALREVLNDSLEKVAQDLVTKSDLENQEYLFKAAIAELRSELQ 68 (177)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44555555556666655555555556777777755554444445554443
No 162
>TIGR00634 recN DNA repair protein RecN. All proteins in this family for which functions are known are ATP binding proteins involved in the initiation of recombination and recombinational repair.
Probab=37.23 E-value=8.4e+02 Score=29.63 Aligned_cols=39 Identities=21% Similarity=0.135 Sum_probs=22.7
Q ss_pred hHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHhhccCc
Q 002212 363 NQAEMETLRKQLEFSLDEKEKLERHVSDLVKKLEEQTCP 401 (953)
Q Consensus 363 ~~~El~~~~k~l~~clEen~kl~r~i~~L~~el~~~~~~ 401 (953)
...++..+++.+..+......+.++++.|+..+++....
T Consensus 166 ~~~~~~~~~~~L~~l~~~~~~~~~eld~L~~ql~ELe~~ 204 (563)
T TIGR00634 166 LYQAWLKARQQLKDRQQKEQELAQRLDFLQFQLEELEEA 204 (563)
T ss_pred HHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHhC
Confidence 345556666666666666666666666666655554443
No 163
>PF04420 CHD5: CHD5-like protein; InterPro: IPR007514 Members of this family are probably coiled-coil proteins that are similar to the CHD5 (Congenital heart disease 5) protein. The exact molecular function of these eukaryotic proteins is unknown.; PDB: 3SJA_H 3SJC_D 3SJB_D 3ZS8_D 3VLC_E.
Probab=37.22 E-value=40 Score=34.54 Aligned_cols=57 Identities=21% Similarity=0.328 Sum_probs=36.8
Q ss_pred chhhhHHHHHHHHhhHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHhhccCchhhhhh
Q 002212 349 VNEENEFLRMQAIHNQAEMETLRKQLEFSLDEKEKLERHVSDLVKKLEEQTCPISAKEE 407 (953)
Q Consensus 349 ~~~Ene~Lr~~~~~~~~El~~~~k~l~~clEen~kl~r~i~~L~~el~~~~~~~~~~~~ 407 (953)
...+...|+.++.+...|++.+-.. .-.-..+|++|++|++..|+++..+.....+.
T Consensus 38 ~~~~~~~l~~Ei~~l~~E~~~iS~q--DeFAkwaKl~Rk~~kl~~el~~~~~~~~~~~~ 94 (161)
T PF04420_consen 38 SSKEQRQLRKEILQLKRELNAISAQ--DEFAKWAKLNRKLDKLEEELEKLNKSLSSEKS 94 (161)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTS-TT--TSHHHHHHHHHHHHHHHHHHHHHHHHHHHTCH
T ss_pred ccHHHHHHHHHHHHHHHHHHcCCcH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4456666664555555554444222 23557789999999999999998777654443
No 164
>PF15294 Leu_zip: Leucine zipper
Probab=37.08 E-value=3.2e+02 Score=31.06 Aligned_cols=35 Identities=26% Similarity=0.399 Sum_probs=27.1
Q ss_pred HHHHHHHhHHHHHHHhh-------HHHHHhhhHHHHHHHHhh
Q 002212 512 LELQLAEMNEENEKLLG-------LYEKAMQERDEFKRMISL 546 (953)
Q Consensus 512 L~~ql~e~~~en~kl~~-------lye~am~e~d~~~r~~~~ 546 (953)
|.+-.+++.+||++|.+ .+-.+|.||..+.+.|.+
T Consensus 130 l~kEi~rLq~EN~kLk~rl~~le~~at~~l~Ek~kl~~~L~~ 171 (278)
T PF15294_consen 130 LNKEIDRLQEENEKLKERLKSLEKQATSALDEKSKLEAQLKE 171 (278)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 55666677777777765 788899999999998865
No 165
>KOG0804 consensus Cytoplasmic Zn-finger protein BRAP2 (BRCA1 associated protein) [General function prediction only]
Probab=36.75 E-value=2.2e+02 Score=34.31 Aligned_cols=36 Identities=19% Similarity=0.198 Sum_probs=24.5
Q ss_pred HHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHH
Q 002212 482 LKHKVLIEEKSNLIELYERKEMEMKREAENLELQLA 517 (953)
Q Consensus 482 ~~~~~l~e~~~~l~~~~~~~~~~~~~~~~~L~~ql~ 517 (953)
.+++.+.|..+..+..|+-+|++++++|.+|+-+++
T Consensus 417 ~kl~~~~e~~~~~~~s~d~~I~dLqEQlrDlmf~le 452 (493)
T KOG0804|consen 417 GKLKELEEREKEALGSKDEKITDLQEQLRDLMFFLE 452 (493)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHheehh
Confidence 445666666667777777777777777777766654
No 166
>PF05911 DUF869: Plant protein of unknown function (DUF869); InterPro: IPR008587 This family consists of a number of sequences found in plants. The function of this family is unknown.
Probab=36.49 E-value=7e+02 Score=32.12 Aligned_cols=141 Identities=30% Similarity=0.353 Sum_probs=79.1
Q ss_pred hhHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHhhccCchhhhhhhhcccccCCCccccchhhHHHHHHHHHHHHhhhh
Q 002212 362 HNQAEMETLRKQLEFSLDEKEKLERHVSDLVKKLEEQTCPISAKEETQGFQLSTNVPTINFDDQVELKTMVDAIAVASQR 441 (953)
Q Consensus 362 ~~~~El~~~~k~l~~clEen~kl~r~i~~L~~el~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~e~kt~v~aia~asq~ 441 (953)
+...|+-.+.+.|....-.|.-++.+|.-|-.-|.+-=..++++.+++ +| .+.|||+..|
T Consensus 21 kae~e~~~lk~~l~~~~~~~~~~e~r~~hld~aLkec~~qlr~~ree~--------------eq----~i~~~~~~~s-- 80 (769)
T PF05911_consen 21 KAEAEAASLKQQLEAATQQKLALEDRVSHLDGALKECMRQLRQVREEQ--------------EQ----KIHEAVAKKS-- 80 (769)
T ss_pred HHHHHHHHHHHHHHHHHHHhHHHHHHhhhhhHHHHHHHHHHHHhhHHH--------------HH----HHHHHHHHHh--
Confidence 455778888888888888888888888888777776666666777766 55 4455555444
Q ss_pred HHHhhhhhhhccccchhhHHHHHH-HHhhhhhhhhccHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHhH
Q 002212 442 EAEAHQTAIGLSKMHDELRLELEV-LNKEKSEFNKLNDELQLKHKVLIEEKSNLIELYERKEMEMKREAENLELQLAEMN 520 (953)
Q Consensus 442 ~~e~~~~~i~l~k~~~~~~~~~e~-~~~~~~e~~~ln~e~~~~~~~l~e~~~~l~~~~~~~~~~~~~~~~~L~~ql~e~~ 520 (953)
++++..+.+||. +-+...++.++.-|+-.--+.|.+--+-+.++-+.+ ......+..|...|+-+.
T Consensus 81 ------------~e~e~~~~~le~~l~e~~~~l~~~~~e~~~l~~~l~~~~~~i~~l~~~~-~~~e~~~~~l~~~l~~~e 147 (769)
T PF05911_consen 81 ------------KEWEKIKSELEAKLAELSKRLAESAAENSALSKALQEKEKLIAELSEEK-SQAEAEIEDLMARLESTE 147 (769)
T ss_pred ------------HHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHH-HHHHhHHHHHHHHHHHHH
Confidence 444444555543 122222233333333222233333333333333222 222334566777777777
Q ss_pred HHHHHHhhHHHHHhhhH
Q 002212 521 EENEKLLGLYEKAMQER 537 (953)
Q Consensus 521 ~en~kl~~lye~am~e~ 537 (953)
-||.-|. ||--|..+
T Consensus 148 ken~~Lk--ye~~~~~k 162 (769)
T PF05911_consen 148 KENSSLK--YELHVLSK 162 (769)
T ss_pred HHHHHHH--HHHHHHHH
Confidence 7777666 66555443
No 167
>PF05667 DUF812: Protein of unknown function (DUF812); InterPro: IPR008530 This family consists of several eukaryotic proteins of unknown function.
Probab=36.42 E-value=9.5e+02 Score=30.01 Aligned_cols=21 Identities=19% Similarity=0.213 Sum_probs=16.2
Q ss_pred HHHHhhhhhhhhccHHHHHHH
Q 002212 464 EVLNKEKSEFNKLNDELQLKH 484 (953)
Q Consensus 464 e~~~~~~~e~~~ln~e~~~~~ 484 (953)
.=++..|.|.|.+...++-.+
T Consensus 512 ~DTr~lQkeiN~l~gkL~RtF 532 (594)
T PF05667_consen 512 SDTRELQKEINSLTGKLDRTF 532 (594)
T ss_pred HHHHHHHHHHHHHHHHHHhHH
Confidence 336778888888888887777
No 168
>PF10224 DUF2205: Predicted coiled-coil protein (DUF2205); InterPro: IPR019357 This entry represents a highly conserved 100 residue region which is likely to have a coiled-coil structure. The exact function is unknown.
Probab=36.33 E-value=43 Score=31.38 Aligned_cols=50 Identities=26% Similarity=0.278 Sum_probs=0.0
Q ss_pred hhhhhhhHHHHHHHHHHHHHHHhhHhhhccCCccccCCCCCCCcccchhhhHHHHHHHHhh
Q 002212 303 EGGEREMMSQQIMVLQNKLLEALDWKLMHESDSSAVQEPGSPWRTSVNEENEFLRMQAIHN 363 (953)
Q Consensus 303 eegERE~lleeIs~Lqd~Lle~ld~k~~~e~~~v~~~~~~~~~~~s~~~Ene~Lr~~~~~~ 363 (953)
...+++.+..+|-.||+.|...++.-.....++. .+..||++|..|+...
T Consensus 14 ~~e~k~~Li~ei~~LQ~sL~~L~~Rve~Vk~E~~-----------kL~~EN~~Lq~YI~nL 63 (80)
T PF10224_consen 14 EKEEKEELIQEILELQDSLEALSDRVEEVKEENE-----------KLESENEYLQQYIGNL 63 (80)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----------HHHHHHHHHHHHHHHH
No 169
>PF10481 CENP-F_N: Cenp-F N-terminal domain; InterPro: IPR018463 Mitosin or centromere-associated protein-F (Cenp-F) is found bound across the centromere as one of the proteins of the outer layer of the kinetochore []. Most of the kinetochore/centromere functions appear to depend upon binding of the C-terminal part of the molecule, whereas the N-terminal part, here, may be a cytoplasmic player in controlling the function of microtubules and dynein [].
Probab=36.14 E-value=4.8e+02 Score=29.94 Aligned_cols=69 Identities=20% Similarity=0.231 Sum_probs=56.1
Q ss_pred HHHHhhhHhhhhhhhHhhhhhHHHHHHhhhhhhHHhhHHHHhHHHHHhHHHhhhhhcccccchhhHHHH
Q 002212 619 VEKAFAEVDKLSGDIVAMEDSIQAKQQQCGSLKHLCSEMQERKALVDNKLMALKYSLSSFSSSAAYFEQ 687 (953)
Q Consensus 619 ~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~k~~~~~~~~~~f~~~~~~~~~ 687 (953)
==+|..++.+|-...+..-.+-|.+|-++.||...+..-.-+-.-....+++|+--.-+++.+..-.+.
T Consensus 13 ~~~aLqKIqelE~QldkLkKE~qQrQfQleSlEAaLqKQKqK~e~ek~e~s~LkREnq~l~e~c~~lek 81 (307)
T PF10481_consen 13 PTRALQKIQELEQQLDKLKKERQQRQFQLESLEAALQKQKQKVEEEKNEYSALKRENQSLMESCENLEK 81 (307)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhHHHHHHHHHH
Confidence 346777888888888888888999999999999999887777777778899999988888777654443
No 170
>PF04156 IncA: IncA protein; InterPro: IPR007285 Chlamydia trachomatis is an obligate intracellular bacterium that develops within a parasitophorous vacuole termed an inclusion. The inclusion is nonfusogenic with lysosomes but intercepts lipids from a host cell exocytic pathway. Initiation of chlamydial development is concurrent with modification of the inclusion membrane by a set of C. trachomatis-encoded proteins collectively designated Incs. One of these Incs, IncA (Inclusion membrane protein A), is functionally associated with the homotypic fusion of inclusions [].
Probab=36.03 E-value=2.3e+02 Score=29.05 Aligned_cols=61 Identities=28% Similarity=0.408 Sum_probs=35.1
Q ss_pred hhhccHHHHhhhHHHHHHHhhhhhhhHHHhhhhhhhhccchhhHHHHHHHHHhhhhhHHHH
Q 002212 782 ELLKSEEEKTKLQTELKLCRERLGVVKREFEDLTKKSWKIDSDLQTVQMEIQKSSRSVEEM 842 (953)
Q Consensus 782 ~llk~ee~~~kl~~e~k~~~e~l~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~ 842 (953)
++.+..++...++.+++...+++-.....++++.+.+.++...++..+.+++.....+.++
T Consensus 110 ~l~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~e~~~l~~~~~~~~~~~~~~~~~~~~~ 170 (191)
T PF04156_consen 110 ELEKLKEDLQELRELLKSVEERLDSLDESIKELEKEIRELQKELQDSREEVQELRSQLERL 170 (191)
T ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4455555555555566666666666666666666665555555555555555544444443
No 171
>PF04111 APG6: Autophagy protein Apg6; InterPro: IPR007243 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells. In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. Apg6/Vps30p has two distinct functions in the autophagic process, either associated with the membrane or in a retrieval step of the carboxypeptidase Y sorting pathway [].; GO: 0006914 autophagy; PDB: 3Q8T_A 3VP7_A 4DDP_A.
Probab=35.67 E-value=2.5e+02 Score=31.90 Aligned_cols=124 Identities=27% Similarity=0.350 Sum_probs=47.0
Q ss_pred HHHHHHHHHHHHHHhhccCchhhhhhhhcccccCCCccccchhhHHHHHHHHHHHHhhhhHHHhhhhhhhccccchhhHH
Q 002212 382 EKLERHVSDLVKKLEEQTCPISAKEETQGFQLSTNVPTINFDDQVELKTMVDAIAVASQREAEAHQTAIGLSKMHDELRL 461 (953)
Q Consensus 382 ~kl~r~i~~L~~el~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~e~kt~v~aia~asq~~~e~~~~~i~l~k~~~~~~~ 461 (953)
..|..+++....+...|...+....... ....+.+..-+.+....+.+.++-+.--.+.++
T Consensus 12 ~~l~~~~~~~~~E~~~Y~~fL~~l~~~~-------------~~~~~~~~~~~el~~le~Ee~~l~~eL~~LE~e------ 72 (314)
T PF04111_consen 12 EQLDKQLEQAEKERDTYQEFLKKLEEES-------------DSEEDIEELEEELEKLEQEEEELLQELEELEKE------ 72 (314)
T ss_dssp -------------------------------------------HH--HHHHHHHHHHHHHHHHHHHHHHHHHHH------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcC-------------CcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------
Confidence 4566677777777777776665554211 011222223333333334444443333334444
Q ss_pred HHHHHHhhhhhhhhccHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHhhHHHHHhhhHHHHH
Q 002212 462 ELEVLNKEKSEFNKLNDELQLKHKVLIEEKSNLIELYERKEMEMKREAENLELQLAEMNEENEKLLGLYEKAMQERDEFK 541 (953)
Q Consensus 462 ~~e~~~~~~~e~~~ln~e~~~~~~~l~e~~~~l~~~~~~~~~~~~~~~~~L~~ql~e~~~en~kl~~lye~am~e~d~~~ 541 (953)
..++...++.|...-..+.+ .+...-+....+..++.++.++.+.+..-|+-+-..=|-++
T Consensus 73 ---------------~~~l~~el~~le~e~~~l~~----eE~~~~~~~n~~~~~l~~~~~e~~sl~~q~~~~~~~L~~L~ 133 (314)
T PF04111_consen 73 ---------------REELDQELEELEEELEELDE----EEEEYWREYNELQLELIEFQEERDSLKNQYEYASNQLDRLR 133 (314)
T ss_dssp ---------------HHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHH
T ss_pred ---------------HHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33344444433333333222 23344456677777788888888888877777777766666
Q ss_pred HH
Q 002212 542 RM 543 (953)
Q Consensus 542 r~ 543 (953)
+.
T Consensus 134 kt 135 (314)
T PF04111_consen 134 KT 135 (314)
T ss_dssp T-
T ss_pred hc
Confidence 54
No 172
>KOG0804 consensus Cytoplasmic Zn-finger protein BRAP2 (BRCA1 associated protein) [General function prediction only]
Probab=35.22 E-value=4.9e+02 Score=31.63 Aligned_cols=55 Identities=16% Similarity=0.209 Sum_probs=34.4
Q ss_pred HHHhHHHHHHHHHHhhcCCCchhhhHHHHHHHHHHHHHHHh----h-----hhhhhhHHHHHHHHHHHHHH
Q 002212 262 RLRFREAGIKRLEAVASGKISAETHLLKEKEECLKEIESFY----E-----GGEREMMSQQIMVLQNKLLE 323 (953)
Q Consensus 262 ~LRfREdkI~rLE~l~~g~~sae~~Ll~Ene~L~eEIq~Lq----e-----egERE~lleeIs~Lqd~Lle 323 (953)
.+.-...+++++.... .++.++|+.|.+..+.+. + ....-.+-++|..|+.||..
T Consensus 383 k~~q~q~k~~k~~kel-------~~~~E~n~~l~knq~vw~~kl~~~~e~~~~~~~s~d~~I~dLqEQlrD 446 (493)
T KOG0804|consen 383 KLQQLQTKLKKCQKEL-------KEEREENKKLIKNQDVWRGKLKELEEREKEALGSKDEKITDLQEQLRD 446 (493)
T ss_pred HHHHHHHHHHHHHHHH-------HHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3344445555544433 455677888887777764 2 22333677889999999865
No 173
>PF09755 DUF2046: Uncharacterized conserved protein H4 (DUF2046); InterPro: IPR019152 This is the conserved N-terminal 350 residues of a family of proteins of unknown function possibly containing a coiled-coil domain.
Probab=34.68 E-value=7.8e+02 Score=28.54 Aligned_cols=224 Identities=20% Similarity=0.272 Sum_probs=125.1
Q ss_pred HHHHHhhhhh----hHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHhhHHHHHh-hhHHHHHHHHhhhcCCccccccccc
Q 002212 485 KVLIEEKSNL----IELYERKEMEMKREAENLELQLAEMNEENEKLLGLYEKAM-QERDEFKRMISLCGQNRAEASGEIY 559 (953)
Q Consensus 485 ~~l~e~~~~l----~~~~~~~~~~~~~~~~~L~~ql~e~~~en~kl~~lye~am-~e~d~~~r~~~~~~~~~~~~~~~~~ 559 (953)
+.|.++++.+ +.++...+++-+-...-|.+-++.+..+++.|.-=||+== ---..|-|+|.--.+-
T Consensus 51 ~~L~~e~~~lr~~sv~~~~~aEqEEE~isN~LlKkl~~l~keKe~L~~~~e~EEE~ltn~L~rkl~qLr~E--------- 121 (310)
T PF09755_consen 51 KHLQEENRALREASVRIQAKAEQEEEFISNTLLKKLQQLKKEKETLALKYEQEEEFLTNDLSRKLNQLRQE--------- 121 (310)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---------
Confidence 5666666633 4556667788888888899999999999999876665400 0011222222110000
Q ss_pred cccchhhccccccccccchhhhchhhhhhhhhHHHHHHHHHHHHHHhhhhhhhhhhhhhHHHHhhhHhhhhhhhHhhhhh
Q 002212 560 CPEKLVEIDGEAAFADMETEQLNLANIKVTEDLNLVRLKLEKAQEKLSDSANTITLFGSVEKAFAEVDKLSGDIVAMEDS 639 (953)
Q Consensus 560 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~k~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~ 639 (953)
..+..+.-...---.++-.+.++..+......- -...+.|.++...+|--
T Consensus 122 -----------------K~~lE~~Le~EqE~~V~kL~k~i~~Le~e~~~~-------------q~~le~Lr~EKVdlEn~ 171 (310)
T PF09755_consen 122 -----------------KVELENQLEQEQEYLVNKLQKKIERLEKEKSAK-------------QEELERLRREKVDLENT 171 (310)
T ss_pred -----------------HHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHh-------------HHHHHHHHHHHHhHHHH
Confidence 000000000000001122222333332211111 12345777777777777
Q ss_pred HHHHHHh-hhhhhHHhhHHHHhHHHHHhHHHhhhhhcccc-cchhhHHHHHHHhhhhccccchhhhhhhHhhhHhHh---
Q 002212 640 IQAKQQQ-CGSLKHLCSEMQERKALVDNKLMALKYSLSSF-SSSAAYFEQRAARSRARVTTSSTYLNQKKEQLVHLE--- 714 (953)
Q Consensus 640 ~~~~~~~-~~~l~~~~~~~~~~~~~~~~k~~~~~~~~~~f-~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~l~~l~--- 714 (953)
+-.-|+. ++-|....+.+...|..+..||.. +.|.+ +|.-.-+ -+...+.+..+++|+..-+.+.++|.
T Consensus 172 LE~EQE~lvN~L~Kqm~~l~~eKr~Lq~~l~~---~~s~~~s~~d~~~---~~~~~Dt~e~~~shI~~Lr~EV~RLR~qL 245 (310)
T PF09755_consen 172 LEQEQEALVNRLWKQMDKLEAEKRRLQEKLEQ---PVSAPPSPRDTVN---VSEENDTAERLSSHIRSLRQEVSRLRQQL 245 (310)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcc---ccCCCCCcchHHh---hcccCCchhHHHHHHHHHHHHHHHHHHHH
Confidence 7777765 477888889999999999999855 22222 3322211 13344455667777777777776654
Q ss_pred -HhhHHHHHHhhhhhhhHHHHHHhHHHHHhHhHHHhhhcc
Q 002212 715 -CCKREIEDALGKVQRSEAELRNNLALLKSKLEEENRRQE 753 (953)
Q Consensus 715 -~~k~~~~~~~~~~~~~e~e~~~~~~~~k~k~~~e~~~~e 753 (953)
....+-.+-+....+-|.++|-.=..|+-||.-|.-|+|
T Consensus 246 ~~sq~e~~~k~~~~~~eek~ireEN~rLqr~L~~E~erre 285 (310)
T PF09755_consen 246 AASQQEHSEKMAQYLQEEKEIREENRRLQRKLQREVERRE 285 (310)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444444455555678888888888888888777765
No 174
>COG3074 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=34.63 E-value=2e+02 Score=26.85 Aligned_cols=67 Identities=25% Similarity=0.316 Sum_probs=38.4
Q ss_pred HHHHHHHhhhhhhhhhhhhhHHHHhhhHh----hhhhhhHhhhhhHHHHHHhhhhhhHHhhHHHHhHHHHHhHH
Q 002212 599 LEKAQEKLSDSANTITLFGSVEKAFAEVD----KLSGDIVAMEDSIQAKQQQCGSLKHLCSEMQERKALVDNKL 668 (953)
Q Consensus 599 ~~~~~~~~~~~~~~~~~~~~~e~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~k~ 668 (953)
++...+|+-.|++||+++.. .+-+.. -|+.+.+.+.+....-+++-..||..-+--|+|-..+=+|+
T Consensus 6 ~ekLE~KiqqAvdTI~LLQm---EieELKEknn~l~~e~q~~q~~reaL~~eneqlk~e~~~WQerlrsLLGkm 76 (79)
T COG3074 6 FEKLEAKVQQAIDTITLLQM---EIEELKEKNNSLSQEVQNAQHQREALERENEQLKEEQNGWQERLRALLGKM 76 (79)
T ss_pred HHHHHHHHHHHHHHHHHHHH---HHHHHHHHhhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 56778899999999887653 222222 13333333334444444555566666666666665555544
No 175
>COG4942 Membrane-bound metallopeptidase [Cell division and chromosome partitioning]
Probab=34.37 E-value=9e+02 Score=29.15 Aligned_cols=154 Identities=18% Similarity=0.232 Sum_probs=91.8
Q ss_pred hHHHHHHHHHHHHHHhhhhhhhhhhhhhHHHHhh----hHhhhhhhhHhhhhhHHHHHHhhhhhhHHhh----HHHHhHH
Q 002212 591 DLNLVRLKLEKAQEKLSDSANTITLFGSVEKAFA----EVDKLSGDIVAMEDSIQAKQQQCGSLKHLCS----EMQERKA 662 (953)
Q Consensus 591 ~l~~~~~k~~~~~~~~~~~~~~~~~~~~~e~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~----~~~~~~~ 662 (953)
-|.-.+..++....+|-...+. +.-|+..+. ++..+.+.|-.+..+++...+++..+...+. +-.+|+.
T Consensus 39 ~l~q~q~ei~~~~~~i~~~~~~---~~kL~~~lk~~e~~i~~~~~ql~~s~~~l~~~~~~I~~~~~~l~~l~~q~r~qr~ 115 (420)
T COG4942 39 QLKQIQKEIAALEKKIREQQDQ---RAKLEKQLKSLETEIASLEAQLIETADDLKKLRKQIADLNARLNALEVQEREQRR 115 (420)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhhHHHHHHHHHHHHHHHHHHHH
Confidence 3555555555555555554444 233333332 2334455555666666666666655443333 3347788
Q ss_pred HHHhHHHhhhhhcccccchhhHHHHH-------HHhhhhccccchhhhhhhHhhhHhHhHhhHHHHHHhhhhhhhHHHHH
Q 002212 663 LVDNKLMALKYSLSSFSSSAAYFEQR-------AARSRARVTTSSTYLNQKKEQLVHLECCKREIEDALGKVQRSEAELR 735 (953)
Q Consensus 663 ~~~~k~~~~~~~~~~f~~~~~~~~~~-------~~~~~~~~~~~~~~~~~k~~~l~~l~~~k~~~~~~~~~~~~~e~e~~ 735 (953)
.+-.=|.|+.++=-|=++..--|... ...-++-+.+-..-++.-+..+..|...+..|++.+........+.+
T Consensus 116 ~La~~L~A~~r~g~~p~~~ll~~~eda~~~~R~ai~~~~l~~~~~~~i~~l~~~~~~l~~~~~~iaaeq~~l~~~~~eq~ 195 (420)
T COG4942 116 RLAEQLAALQRSGRNPPPALLVSPEDAQRSVRLAIYYGALNPARAERIDALKATLKQLAAVRAEIAAEQAELTTLLSEQR 195 (420)
T ss_pred HHHHHHHHHHhccCCCCchhhcChhhhhHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 88888999998733332222222111 11112233344445566677788888899999999999999999999
Q ss_pred HhHHHHHhHhHH
Q 002212 736 NNLALLKSKLEE 747 (953)
Q Consensus 736 ~~~~~~k~k~~~ 747 (953)
.+...|.-++.|
T Consensus 196 ~q~~kl~~~~~E 207 (420)
T COG4942 196 AQQAKLAQLLEE 207 (420)
T ss_pred HHHHHHHHHHHH
Confidence 888888777665
No 176
>PRK10698 phage shock protein PspA; Provisional
Probab=33.03 E-value=6.6e+02 Score=27.21 Aligned_cols=200 Identities=13% Similarity=0.161 Sum_probs=0.0
Q ss_pred hhhhHHHHHHHHHHHHHHhhhhhhhhhhhhhHHHHhhhHhhhhhhhHhhhhhHHHHHHhhhhhhHHhhHHHHhHHHHHhH
Q 002212 588 VTEDLNLVRLKLEKAQEKLSDSANTITLFGSVEKAFAEVDKLSGDIVAMEDSIQAKQQQCGSLKHLCSEMQERKALVDNK 667 (953)
Q Consensus 588 ~~~~l~~~~~k~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~k 667 (953)
|+-.-.+++..+-.+-++..+..++ +..-++.-+.++..++..+-..-..+..++.+
T Consensus 4 f~Rl~~ii~a~in~~ldkaEDP~k~-----------------------l~q~i~em~~~l~~~r~alA~~~A~~k~~er~ 60 (222)
T PRK10698 4 FSRFADIVNANINALLEKAEDPQKL-----------------------VRLMIQEMEDTLVEVRSTSARALAEKKQLTRR 60 (222)
T ss_pred HHHHHHHHHhHHHHHHHhhcCHHHH-----------------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHhhhhhcccccchhhHHHHHHHhhhhccccchhhhhhh--------HhhhHhHhHhhHHHHHHhhhhhhhHHHHHHhHH
Q 002212 668 LMALKYSLSSFSSSAAYFEQRAARSRARVTTSSTYLNQK--------KEQLVHLECCKREIEDALGKVQRSEAELRNNLA 739 (953)
Q Consensus 668 ~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~k--------~~~l~~l~~~k~~~~~~~~~~~~~e~e~~~~~~ 739 (953)
+ ......-..++.+|+..+...-+-|.+. .++++.|+..-....+...+.+..-..|+++|.
T Consensus 61 ~----------~~~~~~~~~~e~kA~~Al~~G~EdLAr~AL~~K~~~~~~~~~l~~~~~~~~~~~~~L~~~l~~L~~ki~ 130 (222)
T PRK10698 61 I----------EQAEAQQVEWQEKAELALRKEKEDLARAALIEKQKLTDLIATLEHEVTLVDETLARMKKEIGELENKLS 130 (222)
T ss_pred H----------HHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHhHhHH----HhhhcccceeeEeeccccccCCcccccccccchhhhhccHHHHhhhHHHHHHHhhhhhh--hHHHhhh
Q 002212 740 LLKSKLEE----ENRRQENEKVLFAIDNIEKVDHPQRNWNLGGKATELLKSEEEKTKLQTELKLCRERLGV--VKREFED 813 (953)
Q Consensus 740 ~~k~k~~~----e~~~~e~e~vl~~idn~~~~~~~~~~~~~~gka~~llk~ee~~~kl~~e~k~~~e~l~~--~~~e~~~ 813 (953)
..|.|-.. .+.-+-..+|==++.++. +|.|..-+.-=|+|+--..=--.+-.-.+. +..||..
T Consensus 131 eak~k~~~L~aR~~~A~a~~~~~~~~~~~~-----------~~~a~~~f~rmE~ki~~~Ea~aea~~~~~~~~l~~e~~~ 199 (222)
T PRK10698 131 ETRARQQALMLRHQAASSSRDVRRQLDSGK-----------LDEAMARFESFERRIDQMEAEAESHGFGKQKSLDQQFAE 199 (222)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhCCC-----------cchHHHHHHHHHHHHHHHHHHHhHhhccCCCCHHHHHHH
Q ss_pred hhhhhccchhhHHHHHHHH
Q 002212 814 LTKKSWKIDSDLQTVQMEI 832 (953)
Q Consensus 814 ~~~~~~~~~~~~~~~~~~~ 832 (953)
|.. ...||.++.++...+
T Consensus 200 le~-~~~ve~ELa~LK~~~ 217 (222)
T PRK10698 200 LKA-DDEISEQLAALKAKM 217 (222)
T ss_pred hhc-cchHHHHHHHHHHHh
No 177
>PF05266 DUF724: Protein of unknown function (DUF724); InterPro: IPR007930 This family contains several uncharacterised proteins found exclusively in Arabidopsis thaliana.
Probab=32.78 E-value=6.4e+02 Score=26.96 Aligned_cols=134 Identities=19% Similarity=0.258 Sum_probs=81.2
Q ss_pred hhHHHHHHHhhhhccccchhhhhhhHhhhHhHhHhhHHHHHHhhhhhhhHHHHHHhHHHHHhHhHH---Hhhhcccceee
Q 002212 682 AAYFEQRAARSRARVTTSSTYLNQKKEQLVHLECCKREIEDALGKVQRSEAELRNNLALLKSKLEE---ENRRQENEKVL 758 (953)
Q Consensus 682 ~~~~~~~~~~~~~~~~~~~~~~~~k~~~l~~l~~~k~~~~~~~~~~~~~e~e~~~~~~~~k~k~~~---e~~~~e~e~vl 758 (953)
++|.+.-+.--..+++++.+.++-+..-|+.|+..==.....+.|+-. +-.+|..... +.++-| +.+
T Consensus 50 ~~f~~l~e~v~~l~idd~~~~f~~~~~tl~~LE~~GFnV~~l~~RL~k--------LL~lk~~~~~~~e~~k~le--~~~ 119 (190)
T PF05266_consen 50 VTFANLAEKVKKLQIDDSRSSFESLMKTLSELEEHGFNVKFLRSRLNK--------LLSLKDDQEKLLEERKKLE--KKI 119 (190)
T ss_pred HHHHHHHHHHHHcccCCcHHHHHHHHHHHHHHHHcCCccHHHHHHHHH--------HHHHHHhHHHHHHHHHHHH--HHH
Confidence 466677777788899999999999999999998754333344444332 1122221111 111100 000
Q ss_pred EeeccccccCCcccccccccchhhhhccHHHHhhhHHHHHHHhhhhhhhHHHhhhhhhhhccchhhHHHHHHHHHhhhhh
Q 002212 759 FAIDNIEKVDHPQRNWNLGGKATELLKSEEEKTKLQTELKLCRERLGVVKREFEDLTKKSWKIDSDLQTVQMEIQKSSRS 838 (953)
Q Consensus 759 ~~idn~~~~~~~~~~~~~~gka~~llk~ee~~~kl~~e~k~~~e~l~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 838 (953)
- .-+-++.++-.+|+.--.+++-++++-..|.++-...+++|..++.+++..-.+
T Consensus 120 ~-------------------------~~~~~~~~~e~~i~~Le~ki~el~~~~~~~~~~ke~~~~ei~~lks~~~~l~~~ 174 (190)
T PF05266_consen 120 E-------------------------EKEAELKELESEIKELEMKILELQRQAAKLKEKKEAKDKEISRLKSEAEALKEE 174 (190)
T ss_pred H-------------------------HHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 0 003455666666766667777777776666655556668888888888777777
Q ss_pred HHHHHHHHHHHH
Q 002212 839 VEEMELAHQAVL 850 (953)
Q Consensus 839 ~~e~~~~~~~~~ 850 (953)
+.-.++..+.++
T Consensus 175 ~~~~e~~F~~~~ 186 (190)
T PF05266_consen 175 IENAELEFQSVA 186 (190)
T ss_pred HHHHHHHHHHHh
Confidence 777666666654
No 178
>COG3883 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=32.46 E-value=1.4e+02 Score=33.47 Aligned_cols=66 Identities=15% Similarity=0.263 Sum_probs=0.0
Q ss_pred cHHHHhhhHHHHHHHhhhhhhhHHHhhhhhhhhccchhhHHHHHHHHHhhhhhHHHHHHHHHHHHH
Q 002212 786 SEEEKTKLQTELKLCRERLGVVKREFEDLTKKSWKIDSDLQTVQMEIQKSSRSVEEMELAHQAVLQ 851 (953)
Q Consensus 786 ~ee~~~kl~~e~k~~~e~l~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~ 851 (953)
.+.+++.+|.++..--.+++-+...++++.++.+.+..+|..++.+|...-.++.+..--+..-+|
T Consensus 43 ~~~~~~~~q~ei~~L~~qi~~~~~k~~~~~~~i~~~~~eik~l~~eI~~~~~~I~~r~~~l~~raR 108 (265)
T COG3883 43 LQKEKKNIQNEIESLDNQIEEIQSKIDELQKEIDQSKAEIKKLQKEIAELKENIVERQELLKKRAR 108 (265)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
No 179
>PF15035 Rootletin: Ciliary rootlet component, centrosome cohesion
Probab=32.29 E-value=6.4e+02 Score=26.79 Aligned_cols=38 Identities=16% Similarity=0.183 Sum_probs=31.3
Q ss_pred HHhhhhHHHHHHHHHHHHHHHHHHhhccCchhhhhhhh
Q 002212 372 KQLEFSLDEKEKLERHVSDLVKKLEEQTCPISAKEETQ 409 (953)
Q Consensus 372 k~l~~clEen~kl~r~i~~L~~el~~~~~~~~~~~~~~ 409 (953)
++|.+-.|+..+..--|..|+.++.+||+.....+.-.
T Consensus 2 rrl~a~qe~Qq~qa~Lv~~LQ~KV~qYr~rc~ele~~l 39 (182)
T PF15035_consen 2 RRLDAYQEEQQRQAQLVQRLQAKVLQYRKRCAELEQQL 39 (182)
T ss_pred cccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 56778888899999999999999999998776666554
No 180
>COG2433 Uncharacterized conserved protein [Function unknown]
Probab=32.09 E-value=3.5e+02 Score=33.90 Aligned_cols=93 Identities=18% Similarity=0.328 Sum_probs=60.4
Q ss_pred hhhhhHHHhhhhhhhhccchhhHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHhchhhHHHHHHHHhhhhhhhh
Q 002212 803 RLGVVKREFEDLTKKSWKIDSDLQTVQMEIQKSSRSVEEMELAHQAVLQEQEALLEIREKGKTEIESMILEYMQHVFEAD 882 (953)
Q Consensus 803 ~l~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~f~~~ 882 (953)
.+.+..+++..+.++...++.+++.++.+|+..-+.+++++..+..+-++-. .+.|.+. ||+
T Consensus 416 ei~~~~~~i~~~~~~ve~l~~e~~~L~~~~ee~k~eie~L~~~l~~~~r~~~--~~~~~~r--ei~-------------- 477 (652)
T COG2433 416 EITVYEKRIKKLEETVERLEEENSELKRELEELKREIEKLESELERFRREVR--DKVRKDR--EIR-------------- 477 (652)
T ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHhhhH--HHH--------------
Confidence 3455666666666666666666666666666666666666666666665543 3444332 222
Q ss_pred hhHHHHHHHHHHHHHHHHhhHHHHHHHHHHH
Q 002212 883 LKEAEMRIVEEELQLELRRMDELRVLRAAAA 913 (953)
Q Consensus 883 l~~~e~~~~~e~l~~~~~~~~~~~~~~~~~~ 913 (953)
-.+.+|..|+-+|+.+-++.++|...++..-
T Consensus 478 ~~~~~I~~L~~~L~e~~~~ve~L~~~l~~l~ 508 (652)
T COG2433 478 ARDRRIERLEKELEEKKKRVEELERKLAELR 508 (652)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 2467788888888888888888888776653
No 181
>KOG2391 consensus Vacuolar sorting protein/ubiquitin receptor VPS23 [Posttranslational modification, protein turnover, chaperones; Intracellular trafficking, secretion, and vesicular transport]
Probab=31.18 E-value=72 Score=36.98 Aligned_cols=67 Identities=24% Similarity=0.317 Sum_probs=38.5
Q ss_pred hhhhhHhhhHhHhHhhHHHHHHhhhhhhhHHHHHHhHHHHHhHhHHHhhhcccceeeEeeccccccCCccc
Q 002212 702 YLNQKKEQLVHLECCKREIEDALGKVQRSEAELRNNLALLKSKLEEENRRQENEKVLFAIDNIEKVDHPQR 772 (953)
Q Consensus 702 ~~~~k~~~l~~l~~~k~~~~~~~~~~~~~e~e~~~~~~~~k~k~~~e~~~~e~e~vl~~idn~~~~~~~~~ 772 (953)
-|++-+++|+ .-++++++-.+++.+-=..|..||+.|++|.+|-.-.-|+ -+..-||+.-.-..|.+
T Consensus 236 slkRt~EeL~---~G~~kL~~~~etLEqq~~~L~~niDIL~~k~~eal~~~~n-~~~~~~D~~~~~~~~l~ 302 (365)
T KOG2391|consen 236 SLKRTEEELN---IGKQKLVAMKETLEQQLQSLQKNIDILKSKVREALEKAEN-LEALDIDEAIECTAPLY 302 (365)
T ss_pred HHHhhHHHHH---hhHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHhhhcc-CcCCCchhhhhccchHH
Confidence 3444444443 3445566666666666667777888888887773333344 55666666554333333
No 182
>PF03195 DUF260: Protein of unknown function DUF260; InterPro: IPR004883 The lateral organ boundaries (LOB) gene is expressed at the adaxial base of initiating lateral organs and encodes a plant-specific protein of unknown function. The N-terminal one half of the LOB protein contains a conserved approximately 100-amino acid domain (the LOB domain) that is present in 42 other Arabidopsis thaliana proteins and in proteins from a variety of other plant species. Genes encoding LOB domain (LBD) proteins are expressed in a variety of temporal- and tissue-specific patterns, suggesting that they may function in diverse processes [] The LOB domain contains conserved blocks of amino acids that identify the LBD gene family. In particular, a conserved C-x(2)-C-x(6)-C-x(3)-C motif, which is defining feature of the LOB domain, is present in all LBD proteins. It is possible that this motif forms a new zinc finger [].
Probab=29.59 E-value=54 Score=31.70 Aligned_cols=81 Identities=14% Similarity=0.273 Sum_probs=59.6
Q ss_pred CCcCCCCchhhhhhhhccCCCcceeEEeecCCCCcchhhhhhHhhhHHHhhccccccccccCCchhHHHHHHHHHHHHHH
Q 002212 83 LHVPYRDSKLTFLLQDSLGGNSKTIIIANISPSSCCSLETLSTLKFAQRAKFIKNNAIVNEDASGDVIAMRMEIQQLKKE 162 (953)
Q Consensus 83 ~HVPYRDSKLTrLLQDSLGGNSKT~mIa~VSPs~~~~eETLSTLrFAsRAK~IKNkpvVNed~s~dv~~Lr~eIq~LK~E 162 (953)
+|.|..+..-+....-.||-..-+-|+-.+.|.. -.++.+||-|-+.++.. .|+. ...|-+..++.+|..++.|
T Consensus 20 PyFP~~~~~~F~~vhkvFG~sni~k~L~~~~~~~--R~~a~~Sl~yEA~~R~~--dPv~--Gc~G~i~~L~~ql~~~~~e 93 (101)
T PF03195_consen 20 PYFPADQPQRFANVHKVFGVSNISKMLQELPPEQ--REDAMRSLVYEANARAR--DPVY--GCVGIISQLQQQLQQLQAE 93 (101)
T ss_pred CCCChhHHHHHHHHHHHHchhHHHHHHHhCCccc--hhhHHHHHHHHHHhhcc--CCCc--chHHHHHHHHHHHHHHHHH
Confidence 4566666666666777787777777888887766 56999999999888732 3332 3456677888999999999
Q ss_pred HHHHHhh
Q 002212 163 VSRLRGI 169 (953)
Q Consensus 163 LsrLR~~ 169 (953)
+..++..
T Consensus 94 l~~~~~~ 100 (101)
T PF03195_consen 94 LALVRAQ 100 (101)
T ss_pred HHHHHcc
Confidence 9887653
No 183
>PRK15422 septal ring assembly protein ZapB; Provisional
Probab=29.25 E-value=2.8e+02 Score=26.27 Aligned_cols=70 Identities=21% Similarity=0.289 Sum_probs=40.1
Q ss_pred HHHHHHHhhhhhhhhhhhhh-HHHHhhhHhhhhhhhHhhhhhHHHHHHhhhhhhHHhhHHHHhHHHHHhHH
Q 002212 599 LEKAQEKLSDSANTITLFGS-VEKAFAEVDKLSGDIVAMEDSIQAKQQQCGSLKHLCSEMQERKALVDNKL 668 (953)
Q Consensus 599 ~~~~~~~~~~~~~~~~~~~~-~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~k~ 668 (953)
|+....||-.|++||+++.. +|----+-..|+.+++.+..+-..-.++-.-||..-.--|+|-..+=+|+
T Consensus 6 leqLE~KIqqAvdtI~LLqmEieELKekn~~L~~e~~~~~~~r~~L~~en~qLk~E~~~WqerLr~LLGkm 76 (79)
T PRK15422 6 FEKLEAKVQQAIDTITLLQMEIEELKEKNNSLSQEVQNAQHQREELERENNHLKEQQNGWQERLQALLGRM 76 (79)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 66778899999999887753 11111122234555555444444455555556666666666655555544
No 184
>PF12709 Kinetocho_Slk19: Central kinetochore-associated; InterPro: IPR024312 This is a family of proteins integrally involved in the central kinetochore. Slk19 is a yeast member and it may play an important role in the timing of nuclear migration. It may also participate, directly or indirectly, in the maintenance of centromeric tensile strength during mitotic stagnation, for instance during activation of checkpoint controls, when cells need to preserve nuclear integrity until cell cycle progression can be resumed [].
Probab=29.17 E-value=2.1e+02 Score=27.53 Aligned_cols=47 Identities=23% Similarity=0.422 Sum_probs=30.4
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHhhHHHHHhhhHHHHHHH
Q 002212 494 LIELYERKEMEMKREAENLELQLAEMNEENEKLLGLYEKAMQERDEFKRM 543 (953)
Q Consensus 494 l~~~~~~~~~~~~~~~~~L~~ql~e~~~en~kl~~lye~am~e~d~~~r~ 543 (953)
|.+.|+.+ -..++.+|+.++..+..||+.|-+=-+.+..|.+++=++
T Consensus 39 LKksYe~r---wek~v~~L~~e~~~l~~E~e~L~~~l~~e~~Ek~~Ll~l 85 (87)
T PF12709_consen 39 LKKSYEAR---WEKKVDELENENKALKRENEQLKKKLDTEREEKQELLKL 85 (87)
T ss_pred HHhhHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 34455544 335677777777777777777776666666666665444
No 185
>PF15619 Lebercilin: Ciliary protein causing Leber congenital amaurosis disease
Probab=29.02 E-value=7.4e+02 Score=26.53 Aligned_cols=143 Identities=20% Similarity=0.236 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHhhcCCCchhhhHHHHHHHHHHHHHHHh------hhh
Q 002212 232 DISLQALAAENQAALRLAKQREDEIQGLKMRLRFREAGIKRLEAVASGKISAETHLLKEKEECLKEIESFY------EGG 305 (953)
Q Consensus 232 e~~LkkL~aEle~~~~Lv~qREeeiqs~KM~LRfREdkI~rLE~l~~g~~sae~~Ll~Ene~L~eEIq~Lq------eeg 305 (953)
+.+|.+....-..+=+++.+-.++++.++-.+|--.+....++.-+ .+.-.+...+..+++-|+ .=+
T Consensus 46 ~kAL~k~e~~e~~Lpqll~~h~eEvr~Lr~~LR~~q~~~r~~~~kl-------k~~~~el~k~~~~l~~L~~L~~dknL~ 118 (194)
T PF15619_consen 46 EKALQKYEDTEAELPQLLQRHNEEVRVLRERLRKSQEQERELERKL-------KDKDEELLKTKDELKHLKKLSEDKNLA 118 (194)
T ss_pred HHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHcCCch
Q ss_pred hhhhHHHHHHHHHHHHHHHhhHhhhccCCccccCCCCCCCcccchhhhHHHHHHHHhhHHHHHHHHHHhhhhHHHHHHHH
Q 002212 306 EREMMSQQIMVLQNKLLEALDWKLMHESDSSAVQEPGSPWRTSVNEENEFLRMQAIHNQAEMETLRKQLEFSLDEKEKLE 385 (953)
Q Consensus 306 ERE~lleeIs~Lqd~Lle~ld~k~~~e~~~v~~~~~~~~~~~s~~~Ene~Lr~~~~~~~~El~~~~k~l~~clEen~kl~ 385 (953)
||+.+..+++.+...+-+.-..--..+ .-+.+.-.....++..-.++...+..++..+.
T Consensus 119 eReeL~~kL~~~~~~l~~~~~ki~~Le---------------------k~leL~~k~~~rql~~e~kK~~~~~~~~~~l~ 177 (194)
T PF15619_consen 119 EREELQRKLSQLEQKLQEKEKKIQELE---------------------KQLELENKSFRRQLASEKKKHKEAQEEVKSLQ 177 (194)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHH---------------------HHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHHHHHHHHhhccCch
Q 002212 386 RHVSDLVKKLEEQTCPI 402 (953)
Q Consensus 386 r~i~~L~~el~~~~~~~ 402 (953)
.+|..|+..+.+....+
T Consensus 178 ~ei~~L~~klkEKer~L 194 (194)
T PF15619_consen 178 EEIQRLNQKLKEKEREL 194 (194)
T ss_pred HHHHHHHHHHHHHhhcC
No 186
>cd00632 Prefoldin_beta Prefoldin beta; Prefoldin is a hexameric molecular chaperone complex, composed of two evolutionarily related subunits (alpha and beta), which are found in both eukaryotes and archaea. Prefoldin binds and stabilizes newly synthesized polypeptides allowing them to fold correctly. The hexameric structure consists of a double beta barrel assembly with six protruding coiled-coils. The alpha prefoldin subunits have two beta hairpin structures while the beta prefoldin subunits (this CD) have only one hairpin that is most similar to the second hairpin of the alpha subunit. The prefoldin hexamer consists of two alpha and four beta subunits and is assembled from the beta hairpins of all six subunits. The alpha subunits initially dimerize providing a structural nucleus for the assembly of the beta subunits. In archaea, there is usually only one gene for each subunit while in eukaryotes there two or more paralogous genes encoding each subunit adding heterogeneity to the st
Probab=28.82 E-value=85 Score=29.71 Aligned_cols=77 Identities=25% Similarity=0.414 Sum_probs=39.0
Q ss_pred HhhhcccceeeEeeccccccCCcccccccccchhhhhccHHHHhhhHHHHHHHhhhhhhhHHHhhhhhhhhccchhhHHH
Q 002212 748 ENRRQENEKVLFAIDNIEKVDHPQRNWNLGGKATELLKSEEEKTKLQTELKLCRERLGVVKREFEDLTKKSWKIDSDLQT 827 (953)
Q Consensus 748 e~~~~e~e~vl~~idn~~~~~~~~~~~~~~gka~~llk~ee~~~kl~~e~k~~~e~l~~~~~e~~~~~~~~~~~~~~~~~ 827 (953)
+.+..|++.| +|-+..+|+...-|...|.+.=...-.+-...|-. ++-.+..+|+.++++..+++.++..
T Consensus 26 ~~~~~E~~~v---~~EL~~l~~d~~vy~~VG~vfv~~~~~ea~~~Le~-------~~e~le~~i~~l~~~~~~l~~~~~e 95 (105)
T cd00632 26 EAQLNENKKA---LEELEKLADDAEVYKLVGNVLVKQEKEEARTELKE-------RLETIELRIKRLERQEEDLQEKLKE 95 (105)
T ss_pred HHHHHHHHHH---HHHHHcCCCcchHHHHhhhHHhhccHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444443 45555566666777777876544333333333222 2223444555555555555555555
Q ss_pred HHHHHHh
Q 002212 828 VQMEIQK 834 (953)
Q Consensus 828 ~~~~~~~ 834 (953)
++.+|..
T Consensus 96 lk~~l~~ 102 (105)
T cd00632 96 LQEKIQQ 102 (105)
T ss_pred HHHHHHH
Confidence 5555543
No 187
>PF05546 She9_MDM33: She9 / Mdm33 family; InterPro: IPR008839 Members of this family are mitochondrial inner membrane proteins with a role in inner mitochondrial membrane organisation and biogenesis []. The yeast Mdm33 protein assembles into an oligomeric complex in the inner membrane where it performs homotypic protein-protein interactions. It has been suggested that Mdm33 plays a distinct role, possibly involved in fission of the mitochondrial inner membrane [].
Probab=28.78 E-value=6.1e+02 Score=27.84 Aligned_cols=80 Identities=18% Similarity=0.300 Sum_probs=58.8
Q ss_pred HHHHHHHHhhhhhhhhhhhhhHHHHhhhHhhhhhhhHhhhhhHHHHHHhhhhhhHHhhHHHHhHHHHHhHHHhhhhhccc
Q 002212 598 KLEKAQEKLSDSANTITLFGSVEKAFAEVDKLSGDIVAMEDSIQAKQQQCGSLKHLCSEMQERKALVDNKLMALKYSLSS 677 (953)
Q Consensus 598 k~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~k~~~~~~~~~~ 677 (953)
-++..|.+|+.+..++--+- ..-.+++|-..|...|..+...++.....|...+.++.++.....-...|=--=++
T Consensus 10 ~~d~lq~~i~~as~~lNd~T----GYs~Ie~LK~~i~~~E~~l~~~r~~~~~aK~~Y~~ai~~Rs~sQrEvn~LLqRK~s 85 (207)
T PF05546_consen 10 YMDSLQETIFTASQALNDVT----GYSEIEKLKKSIEELEDELEAARQEVREAKAAYDDAIQQRSSSQREVNELLQRKHS 85 (207)
T ss_pred HHHHHHHHHHHHHHHHHhcc----ChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccC
Confidence 36677777777766643322 14567788899999999999999999999999999999988776666555444455
Q ss_pred ccch
Q 002212 678 FSSS 681 (953)
Q Consensus 678 f~~~ 681 (953)
++|.
T Consensus 86 Ws~~ 89 (207)
T PF05546_consen 86 WSPA 89 (207)
T ss_pred CChH
Confidence 6554
No 188
>PF03962 Mnd1: Mnd1 family; InterPro: IPR005647 This family of proteins includes meiotic nuclear division protein 1 (MND1) from Saccharomyces cerevisiae (Baker's yeast). The mnd1 protein forms a complex with hop2 to promote homologous chromosome pairing and meiotic double-strand break repair [].
Probab=28.45 E-value=4.4e+02 Score=27.89 Aligned_cols=45 Identities=24% Similarity=0.394 Sum_probs=34.4
Q ss_pred HHHhhhHHHHHHHhhhhhhhHHHhhhhhhhhccchhhHHHHHHHHHhh
Q 002212 788 EEKTKLQTELKLCRERLGVVKREFEDLTKKSWKIDSDLQTVQMEIQKS 835 (953)
Q Consensus 788 e~~~kl~~e~k~~~e~l~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~ 835 (953)
++|+.+..+++.-+.++..+++|+....+ +|- ..|+.+..++..+
T Consensus 103 ~eR~~~l~~l~~l~~~~~~l~~el~~~~~-~Dp--~~i~~~~~~~~~~ 147 (188)
T PF03962_consen 103 EEREELLEELEELKKELKELKKELEKYSE-NDP--EKIEKLKEEIKIA 147 (188)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHh-cCH--HHHHHHHHHHHHH
Confidence 89999999999999999999999996644 322 3566666666544
No 189
>PF08317 Spc7: Spc7 kinetochore protein; InterPro: IPR013253 This entry consists of cell division proteins which are required for kinetochore-spindle association [].
Probab=28.05 E-value=9.2e+02 Score=27.32 Aligned_cols=76 Identities=26% Similarity=0.325 Sum_probs=46.5
Q ss_pred chhhHHHHHHHHhhhhhhhhccHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHhhHHH
Q 002212 456 HDELRLELEVLNKEKSEFNKLNDELQLKHKVLIEEKSNLIELYERKEMEMKREAENLELQLAEMNEENEKLLGLYE 531 (953)
Q Consensus 456 ~~~~~~~~e~~~~~~~e~~~ln~e~~~~~~~l~e~~~~l~~~~~~~~~~~~~~~~~L~~ql~e~~~en~kl~~lye 531 (953)
|+.|.-++.-++....|......+-=..++.-+.+++..++...+.+.+++.+++.+...+.++.++..++..-..
T Consensus 186 ~~~L~~e~~~Lk~~~~e~~~~D~~eL~~lr~eL~~~~~~i~~~k~~l~el~~el~~l~~~i~~~~~~k~~l~~eI~ 261 (325)
T PF08317_consen 186 KAELEEELENLKQLVEEIESCDQEELEALRQELAEQKEEIEAKKKELAELQEELEELEEKIEELEEQKQELLAEIA 261 (325)
T ss_pred HHHHHHHHHHHHHHHhhhhhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444444455555544444444444555566666667766777777777777777777777777777664443
No 190
>COG1842 PspA Phage shock protein A (IM30), suppresses sigma54-dependent transcription [Transcription / Signal transduction mechanisms]
Probab=27.71 E-value=8.5e+02 Score=26.76 Aligned_cols=127 Identities=18% Similarity=0.268 Sum_probs=61.7
Q ss_pred hhhhHHHHHHHHHHHHHHhhhhhhhhhhhhhHHHHhhhHhhhhhhhHhhhhhHHHHHHhhhhhhHHhhHHHHhHHHHHhH
Q 002212 588 VTEDLNLVRLKLEKAQEKLSDSANTITLFGSVEKAFAEVDKLSGDIVAMEDSIQAKQQQCGSLKHLCSEMQERKALVDNK 667 (953)
Q Consensus 588 ~~~~l~~~~~k~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~k 667 (953)
|+...++++..+..+-+++.+.. ..|+.++-+. +.++.-++..+.+.-.++..++.+
T Consensus 4 ~~r~~~~~~a~~~~~~dk~EDp~------~~l~Q~ird~-----------------~~~l~~ar~~~A~~~a~~k~~e~~ 60 (225)
T COG1842 4 FSRLKDLVKANINELLDKAEDPE------KMLEQAIRDM-----------------ESELAKARQALAQAIARQKQLERK 60 (225)
T ss_pred HHHHHHHHHHHHHHHHHhhcCHH------HHHHHHHHHH-----------------HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 55566666666666666666663 3344444333 344445555666666666667777
Q ss_pred HHhhhhhcccccchhhHHHHHHHhhhhccccchhhhhh-hHhhhHhHhHhhHHHHHHhhhhhhhHHHHHHhHHHHHhHhH
Q 002212 668 LMALKYSLSSFSSSAAYFEQRAARSRARVTTSSTYLNQ-KKEQLVHLECCKREIEDALGKVQRSEAELRNNLALLKSKLE 746 (953)
Q Consensus 668 ~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~-k~~~l~~l~~~k~~~~~~~~~~~~~e~e~~~~~~~~k~k~~ 746 (953)
|..+ ..+-+-++.+|+..+.+--+-|.. -=++-..|+.....++..++........|+.++..|..|+.
T Consensus 61 ~~~~----------~~~~~k~e~~A~~Al~~g~E~LAr~al~~~~~le~~~~~~~~~~~~~~~~~~~l~~~~~~Le~Ki~ 130 (225)
T COG1842 61 LEEA----------QARAEKLEEKAELALQAGNEDLAREALEEKQSLEDLAKALEAELQQAEEQVEKLKKQLAALEQKIA 130 (225)
T ss_pred HHHH----------HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 6332 223333344444444443332221 12222333334444444444444444444444444444444
Q ss_pred H
Q 002212 747 E 747 (953)
Q Consensus 747 ~ 747 (953)
+
T Consensus 131 e 131 (225)
T COG1842 131 E 131 (225)
T ss_pred H
Confidence 4
No 191
>PF12718 Tropomyosin_1: Tropomyosin like; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells. In striated muscle, tropomyosin mediate the interactions between the troponin complex and actin so as to regulate muscle contraction []. The role of tropomyosin in smooth muscle and non-muscle tissues is not clear. Tropomyosin is an alpha-helical protein that forms a coiled-coil structure of 2 parallel helices containing 2 sets of 7 alternating actin binding sites []. There are multiple cell-specific isoforms, created by differential splicing of the messenger RNA from one gene, but the proportions of the isoforms vary between different cell types. Muscle isoforms of tropomyosin are characterised by having 284 amino acid residues and a highly conserved N-terminal region, whereas non-muscle forms are generally smaller and are heterogeneous in their N-terminal region. This entry represents tropomyosin (Tmp) 1, 2 and 3. Within the yeast Tmp1 and Tmp2, biochemical and sequence analyses indicate that Tpm2 spans four actin monomers along a filament, whereas Tpm1 spans five. Despite its shorter length, Tpm2 can compete with Tpm1 for binding to F-actin. Over-expression of Tpm2 in vivo alters the axial budding of haploids to a bipolar pattern, and this can be partially suppressed by co-over-expression of Tpm1. This suggests distinct functions for the two tropomyosins, and indicates that the ratio between them is important for correct morphogenesis [].
Probab=27.64 E-value=3e+02 Score=27.97 Aligned_cols=54 Identities=19% Similarity=0.304 Sum_probs=37.7
Q ss_pred HHHHhhhHhhhhhhhHhhhhhHHHHHHhhhhhhHHhhHHHHhHHHHHhHHHhhh
Q 002212 619 VEKAFAEVDKLSGDIVAMEDSIQAKQQQCGSLKHLCSEMQERKALVDNKLMALK 672 (953)
Q Consensus 619 ~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~k~~~~~ 672 (953)
.+.|...++.+-..+...+...-.+-+++.||..-.+.....-.-++.+++..+
T Consensus 9 ~d~a~~r~e~~e~~~K~le~~~~~~E~EI~sL~~K~~~lE~eld~~~~~l~~~k 62 (143)
T PF12718_consen 9 ADNAQDRAEELEAKVKQLEQENEQKEQEITSLQKKNQQLEEELDKLEEQLKEAK 62 (143)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 355666777777777777777777777777777777777777666666664444
No 192
>PRK10884 SH3 domain-containing protein; Provisional
Probab=27.10 E-value=4.1e+02 Score=28.70 Aligned_cols=44 Identities=20% Similarity=0.261 Sum_probs=28.4
Q ss_pred HHHHHHHHHHHHHHHHHHhHHHHHHHhhHHHHHhhhHHHHHHHH
Q 002212 501 KEMEMKREAENLELQLAEMNEENEKLLGLYEKAMQERDEFKRMI 544 (953)
Q Consensus 501 ~~~~~~~~~~~L~~ql~e~~~en~kl~~lye~am~e~d~~~r~~ 544 (953)
...++...+..+..+..++.++|++|-.-++.+-.+.|.++..+
T Consensus 119 ~~~~l~~~~~~~~~~~~~L~~~n~~L~~~l~~~~~~~~~l~~~~ 162 (206)
T PRK10884 119 RTAEMQQKVAQSDSVINGLKEENQKLKNQLIVAQKKVDAANLQL 162 (206)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455555666666666666777777666667777777666554
No 193
>PF02403 Seryl_tRNA_N: Seryl-tRNA synthetase N-terminal domain; InterPro: IPR015866 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. This entry represents the N-terminal domain of Seryl-tRNA synthetase, which consists of two helices in a long alpha-hairpin. Seryl-tRNA synthetase (6.1.1.11 from EC) exists as monomer and belongs to class IIa [].; GO: 0000166 nucleotide binding, 0004828 serine-tRNA ligase activity, 0005524 ATP binding, 0006434 seryl-tRNA aminoacylation, 0005737 cytoplasm; PDB: 3QO8_A 3QO5_A 3QO7_A 3QNE_A 3LSQ_A 3LSS_A 2DQ3_B 1SET_A 1SER_A 1SRY_B ....
Probab=27.06 E-value=3.7e+02 Score=25.26 Aligned_cols=40 Identities=25% Similarity=0.413 Sum_probs=35.4
Q ss_pred chhhhhccHHHHhhhHHHHHHHhhhhhhhHHHhhhhhhhh
Q 002212 779 KATELLKSEEEKTKLQTELKLCRERLGVVKREFEDLTKKS 818 (953)
Q Consensus 779 ka~~llk~ee~~~kl~~e~k~~~e~l~~~~~e~~~~~~~~ 818 (953)
-..+++..-+++.+++.++...|.+-..+.++|+.+.+..
T Consensus 27 ~vd~i~~ld~~~r~l~~~~e~lr~~rN~~sk~I~~~~~~~ 66 (108)
T PF02403_consen 27 DVDEIIELDQERRELQQELEELRAERNELSKEIGKLKKAG 66 (108)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHTT
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHhhCc
Confidence 4457888999999999999999999999999999997744
No 194
>PF07795 DUF1635: Protein of unknown function (DUF1635); InterPro: IPR012862 The members of this family include sequences that are parts of hypothetical proteins expressed by plant species. The region in question is about 170 amino acids long.
Probab=26.96 E-value=1.4e+02 Score=32.60 Aligned_cols=26 Identities=38% Similarity=0.473 Sum_probs=20.3
Q ss_pred hHHHHHHHhhHHHHHhhhHHHHHHHH
Q 002212 519 MNEENEKLLGLYEKAMQERDEFKRMI 544 (953)
Q Consensus 519 ~~~en~kl~~lye~am~e~d~~~r~~ 544 (953)
..++=..|..|..+|++||||-+..+
T Consensus 31 ~eeqi~~L~~Ll~~a~~ERDEAr~ql 56 (214)
T PF07795_consen 31 REEQIAHLKDLLKKAYQERDEAREQL 56 (214)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444578999999999999988654
No 195
>KOG0964 consensus Structural maintenance of chromosome protein 3 (sister chromatid cohesion complex Cohesin, subunit SMC3) [Cell cycle control, cell division, chromosome partitioning]
Probab=26.93 E-value=1.7e+03 Score=29.97 Aligned_cols=39 Identities=26% Similarity=0.360 Sum_probs=30.7
Q ss_pred HHHHHHHHHHHhHHH-------HHHHhhHHHHHhhhHHHHHHHHhh
Q 002212 508 EAENLELQLAEMNEE-------NEKLLGLYEKAMQERDEFKRMISL 546 (953)
Q Consensus 508 ~~~~L~~ql~e~~~e-------n~kl~~lye~am~e~d~~~r~~~~ 546 (953)
...+|.+-|.+++++ |-|-..=|.++|..||+|+++..+
T Consensus 950 ~~~el~kkL~~~neelk~ys~VNKkAldQf~nfseQre~L~~R~eE 995 (1200)
T KOG0964|consen 950 KSKELMKKLHRCNEELKGYSNVNKKALDQFVNFSEQRESLKKRQEE 995 (1200)
T ss_pred CHHHHHHHHHHHHHHHhhcchhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 356677777777776 666677799999999999998876
No 196
>PF04849 HAP1_N: HAP1 N-terminal conserved region; InterPro: IPR006933 This family is defined by an N-terminal conserved region found in several huntingtin-associated protein 1 (HAP1) homologues. HAP1 binds to huntingtin in a polyglutamine repeat-length-dependent manner. However, its possible role in the pathogenesis of Huntingtons disease is unclear. This family also includes a similar N-terminal conserved region from hypothetical protein products of ALS2CR3 genes found in the human juvenile amyotrophic lateral sclerosis critical region 2q33-2q34 [].
Probab=26.89 E-value=1e+03 Score=27.52 Aligned_cols=181 Identities=20% Similarity=0.282 Sum_probs=0.0
Q ss_pred HHHHHHHhhhhhhhHHHHHH------------HHHHHHHHHHHHHHHHHHHHHHHHHHHhHHH-----------------
Q 002212 218 ELALVGAFRREKEKDISLQA------------LAAENQAALRLAKQREDEIQGLKMRLRFREA----------------- 268 (953)
Q Consensus 218 e~~lv~a~RrekEke~~Lkk------------L~aEle~~~~Lv~qREeeiqs~KM~LRfREd----------------- 268 (953)
|...|..+-.+++++-.+-+ |...+..+...+....+.+..++--|..|.+
T Consensus 63 Didavt~lLeEkerDLelaA~iGqsLl~~N~~L~~~~~~le~~L~~~~e~v~qLrHeL~~kdeLL~~ys~~~ee~~~~~~ 142 (306)
T PF04849_consen 63 DIDAVTRLLEEKERDLELAARIGQSLLEQNQDLSERNEALEEQLGAALEQVEQLRHELSMKDELLQIYSNDDEESEPESS 142 (306)
T ss_pred hHHHHHHHHHHHhhhHHHHHHHhHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcHhhhcccccC
Q ss_pred ------------------HHHHHHHhhcCCCchhhhHHHHHHHHHHHHHHHh------hhhhhhhHHHHHHHHHH-----
Q 002212 269 ------------------GIKRLEAVASGKISAETHLLKEKEECLKEIESFY------EGGEREMMSQQIMVLQN----- 319 (953)
Q Consensus 269 ------------------kI~rLE~l~~g~~sae~~Ll~Ene~L~eEIq~Lq------eegERE~lleeIs~Lqd----- 319 (953)
.+..|..-+ ..|.+||..|..|...|. ++-|+.-+..=+..|.+
T Consensus 143 ~~~~~~~~~~~~~~~~~~~le~Lq~Kl-------k~LEeEN~~LR~Ea~~L~~et~~~EekEqqLv~dcv~QL~~An~qi 215 (306)
T PF04849_consen 143 ESTPLRRNESSLSSQKCIQLEALQEKL-------KSLEEENEQLRSEASQLKTETDTYEEKEQQLVLDCVKQLSEANQQI 215 (306)
T ss_pred CCccccccccccccccchhHHHHHHHH-------HHHHHHHHHHHHHHHHhhHHHhhccHHHHHHHHHHHHHhhhcchhH
Q ss_pred -HHHHHhhHhhhccCCccccCCCCCCCcccchhhhHHHHHHHHhhHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHhhc
Q 002212 320 -KLLEALDWKLMHESDSSAVQEPGSPWRTSVNEENEFLRMQAIHNQAEMETLRKQLEFSLDEKEKLERHVSDLVKKLEEQ 398 (953)
Q Consensus 320 -~Lle~ld~k~~~e~~~v~~~~~~~~~~~s~~~Ene~Lr~~~~~~~~El~~~~k~l~~clEen~kl~r~i~~L~~el~~~ 398 (953)
.|-+.|..| .+++..-+-++.+..++|-++.+..-.+--+|+.|..++......-...
T Consensus 216 a~LseELa~k---------------------~Ee~~rQQEEIt~LlsqivdlQ~r~k~~~~EnEeL~q~L~~ske~Q~~L 274 (306)
T PF04849_consen 216 ASLSEELARK---------------------TEENRRQQEEITSLLSQIVDLQQRCKQLAAENEELQQHLQASKESQRQL 274 (306)
T ss_pred HHHHHHHHHH---------------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHH
Q ss_pred cCchhhhhhhhcccccCCCccccchhhHHHHHH
Q 002212 399 TCPISAKEETQGFQLSTNVPTINFDDQVELKTM 431 (953)
Q Consensus 399 ~~~~~~~~~~~~~~~~~~~~~~~~~~q~e~kt~ 431 (953)
...+..++.-- .++......+|.|||++
T Consensus 275 ~aEL~elqdkY-----~E~~~mL~EaQEElk~l 302 (306)
T PF04849_consen 275 QAELQELQDKY-----AECMAMLHEAQEELKTL 302 (306)
T ss_pred HHHHHHHHHHH-----HHHHHHHHHHHHHHHHh
No 197
>KOG3215 consensus Uncharacterized conserved protein [Function unknown]
Probab=26.33 E-value=1.6e+02 Score=32.15 Aligned_cols=46 Identities=20% Similarity=0.324 Sum_probs=40.2
Q ss_pred HHHHhhhhhhhHHHhhhhhhhhccchhhHHHHHHHHHhhhhhHHHH
Q 002212 797 LKLCRERLGVVKREFEDLTKKSWKIDSDLQTVQMEIQKSSRSVEEM 842 (953)
Q Consensus 797 ~k~~~e~l~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~ 842 (953)
|-+++.-..|.++|+++++++-+.||+.|+....+|+.+-+.+.|.
T Consensus 77 mlKtqrv~e~nlre~e~~~q~k~Eiersi~~a~~kie~lkkql~ea 122 (222)
T KOG3215|consen 77 MLKTQRVIEMNLREIENLVQKKLEIERSIQKARNKIELLKKQLHEA 122 (222)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445555678999999999999999999999999999999999884
No 198
>PLN02939 transferase, transferring glycosyl groups
Probab=26.23 E-value=1.7e+03 Score=29.74 Aligned_cols=47 Identities=26% Similarity=0.348 Sum_probs=27.8
Q ss_pred hhhHHHHHHHHHHHHHHhhhhhhhhhhhhhHHHHhhhHhhhhhhhHhhhhhHHHHHHhhhhhh
Q 002212 589 TEDLNLVRLKLEKAQEKLSDSANTITLFGSVEKAFAEVDKLSGDIVAMEDSIQAKQQQCGSLK 651 (953)
Q Consensus 589 ~~~l~~~~~k~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 651 (953)
++.+.+.+.|++.+.+++-.+.- ++-..|+...+.++.-|.-+..|+
T Consensus 350 ~~~~~~~~~~~~~~~~~~~~~~~----------------~~~~~~~~~~~~~~~~~~~~~~~~ 396 (977)
T PLN02939 350 SYKVELLQQKLKLLEERLQASDH----------------EIHSYIQLYQESIKEFQDTLSKLK 396 (977)
T ss_pred HHHHHHHHHHHHHHHHHHHhhHH----------------HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44557777888888888866532 334445555555555555444443
No 199
>TIGR00634 recN DNA repair protein RecN. All proteins in this family for which functions are known are ATP binding proteins involved in the initiation of recombination and recombinational repair.
Probab=25.92 E-value=1.3e+03 Score=28.17 Aligned_cols=40 Identities=28% Similarity=0.390 Sum_probs=29.0
Q ss_pred HHHHHHHHHHHHHHHHHHHhHHHHHHHhhHHHHHhhhHHHH
Q 002212 500 RKEMEMKREAENLELQLAEMNEENEKLLGLYEKAMQERDEF 540 (953)
Q Consensus 500 ~~~~~~~~~~~~L~~ql~e~~~en~kl~~lye~am~e~d~~ 540 (953)
....+..+++..|+.|++|+.+.|-+ -|=|+.--.+++.|
T Consensus 182 ~~~~~~~~eld~L~~ql~ELe~~~l~-~~E~e~L~~e~~~L 221 (563)
T TIGR00634 182 QKEQELAQRLDFLQFQLEELEEADLQ-PGEDEALEAEQQRL 221 (563)
T ss_pred hhhHHHHHHHHHHHHHHHHHHhCCcC-CCcHHHHHHHHHHH
Confidence 34567778999999999999998876 45555555555544
No 200
>PF15290 Syntaphilin: Golgi-localised syntaxin-1-binding clamp
Probab=25.21 E-value=5.3e+02 Score=29.67 Aligned_cols=49 Identities=33% Similarity=0.422 Sum_probs=37.0
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHhHHHHHH----HHHHhh
Q 002212 229 KEKDISLQALAAENQAALRLAKQREDEIQGLKM-RLRFREAGIK----RLEAVA 277 (953)
Q Consensus 229 kEke~~LkkL~aEle~~~~Lv~qREeeiqs~KM-~LRfREdkI~----rLE~l~ 277 (953)
+.|+-.++-|++.+.....-+..|+-+|..+|+ +-|.|||=|+ |.|+.+
T Consensus 64 QQKEV~iRHLkakLkes~~~l~dRetEI~eLksQL~RMrEDWIEEECHRVEAQL 117 (305)
T PF15290_consen 64 QQKEVCIRHLKAKLKESENRLHDRETEIDELKSQLARMREDWIEEECHRVEAQL 117 (305)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456667778888888877788889999999994 5588888664 555554
No 201
>PF03962 Mnd1: Mnd1 family; InterPro: IPR005647 This family of proteins includes meiotic nuclear division protein 1 (MND1) from Saccharomyces cerevisiae (Baker's yeast). The mnd1 protein forms a complex with hop2 to promote homologous chromosome pairing and meiotic double-strand break repair [].
Probab=24.90 E-value=6.9e+02 Score=26.50 Aligned_cols=49 Identities=18% Similarity=0.395 Sum_probs=35.6
Q ss_pred ccccCCcccccccccchhhhhccHHHHhhhHHHHHHHhhhhhhhHHHhhhh
Q 002212 764 IEKVDHPQRNWNLGGKATELLKSEEEKTKLQTELKLCRERLGVVKREFEDL 814 (953)
Q Consensus 764 ~~~~~~~~~~~~~~gka~~llk~ee~~~kl~~e~k~~~e~l~~~~~e~~~~ 814 (953)
++++-++---|-+.+.|+--++ ..-.+|+.++...+.++..++.+|+..
T Consensus 47 ~EKiGssn~YWsFps~~~~~~~--~~~~~l~~~~~~~~~~i~~l~~~i~~~ 95 (188)
T PF03962_consen 47 VEKIGSSNYYWSFPSQAKQKRQ--NKLEKLQKEIEELEKKIEELEEKIEEA 95 (188)
T ss_pred hhhccCeeEEEecChHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4678888889999998876443 444567777777777777777777766
No 202
>COG1382 GimC Prefoldin, chaperonin cofactor [Posttranslational modification, protein turnover, chaperones]
Probab=24.55 E-value=4e+02 Score=26.87 Aligned_cols=102 Identities=27% Similarity=0.366 Sum_probs=0.0
Q ss_pred hhhHhHhHhhHHHHHHhhhhhhhHHHHHHhHHHHHhHhHHHhhhcccceeeEeeccccccCCcccccccccchhhhhccH
Q 002212 708 EQLVHLECCKREIEDALGKVQRSEAELRNNLALLKSKLEEENRRQENEKVLFAIDNIEKVDHPQRNWNLGGKATELLKSE 787 (953)
Q Consensus 708 ~~l~~l~~~k~~~~~~~~~~~~~e~e~~~~~~~~k~k~~~e~~~~e~e~vl~~idn~~~~~~~~~~~~~~gka~~llk~e 787 (953)
.+++.+|.....+++.....++-|++|+-+-..|.- ++++|..-..+...|.. |.|.
T Consensus 10 ~~l~q~QqLq~ql~~~~~qk~~le~qL~E~~~al~E--------------------le~l~eD~~vYk~VG~l--lvk~- 66 (119)
T COG1382 10 AQLAQLQQLQQQLQKVILQKQQLEAQLKEIEKALEE--------------------LEKLDEDAPVYKKVGNL--LVKV- 66 (119)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------------------HhcCCcccHHHHHhhhH--Hhhh-
Q ss_pred HHHhhhHHHHHHHhhhhhhhHHHhhhhhhhhccchhhHHHHHHHHHhhh
Q 002212 788 EEKTKLQTELKLCRERLGVVKREFEDLTKKSWKIDSDLQTVQMEIQKSS 836 (953)
Q Consensus 788 e~~~kl~~e~k~~~e~l~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~ 836 (953)
.+.++-.|++ +++-.+...|+.|.+.-.+++.+++.++.+|++.+
T Consensus 67 -~k~~~~~eL~---er~E~Le~ri~tLekQe~~l~e~l~eLq~~i~~~l 111 (119)
T COG1382 67 -SKEEAVDELE---ERKETLELRIKTLEKQEEKLQERLEELQSEIQKAL 111 (119)
T ss_pred -hHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
No 203
>PRK03947 prefoldin subunit alpha; Reviewed
Probab=24.50 E-value=6.9e+02 Score=24.62 Aligned_cols=54 Identities=20% Similarity=0.305 Sum_probs=32.0
Q ss_pred chhhhhhhHhhhHhHhHhhHHHHHHhhhhhhhHHHHHHhHHHHHhHhHHHhhhcccceeeEeecc
Q 002212 699 SSTYLNQKKEQLVHLECCKREIEDALGKVQRSEAELRNNLALLKSKLEEENRRQENEKVLFAIDN 763 (953)
Q Consensus 699 ~~~~~~~k~~~l~~l~~~k~~~~~~~~~~~~~e~e~~~~~~~~k~k~~~e~~~~e~e~vl~~idn 763 (953)
....+++-+.++..|+.....+.++......+-..|. .|+. ..++-.|+|.|+.
T Consensus 11 l~~~~~~l~~~~~~l~~~~~~l~~~~~e~~~~~e~l~----~l~~-------~~~~~e~lvplg~ 64 (140)
T PRK03947 11 LAAQLQALQAQIEALQQQLEELQASINELDTAKETLE----ELKS-------KGEGKETLVPIGA 64 (140)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----hhcc-------cCCCCeEEEEcCC
Confidence 3444566667777777777777666665544432222 2221 1257889999985
No 204
>KOG0994 consensus Extracellular matrix glycoprotein Laminin subunit beta [Extracellular structures]
Probab=23.67 E-value=2.1e+03 Score=29.89 Aligned_cols=47 Identities=19% Similarity=0.255 Sum_probs=38.2
Q ss_pred hHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHhhccCchhhhhhhh
Q 002212 363 NQAEMETLRKQLEFSLDEKEKLERHVSDLVKKLEEQTCPISAKEETQ 409 (953)
Q Consensus 363 ~~~El~~~~k~l~~clEen~kl~r~i~~L~~el~~~~~~~~~~~~~~ 409 (953)
...||..+-..-+...+..++|...+..|...++..++.+-+.++..
T Consensus 1209 kl~~ir~il~~~svs~~~i~~l~~~~~~lr~~l~~~~e~L~~~E~~L 1255 (1758)
T KOG0994|consen 1209 KLEEIRAILSAPSVSAEDIAQLASATESLRRQLQALTEDLPQEEETL 1255 (1758)
T ss_pred HHHHHHHHhcCCCccHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhh
Confidence 34556666666688899999999999999999999998888777766
No 205
>TIGR02338 gimC_beta prefoldin, beta subunit, archaeal. Chaperonins are cytosolic, ATP-dependent molecular chaperones, with a conserved toroidal architecture, that assist in the folding of nascent and/or denatured polypeptide chains. The group I chaperonin system consists of GroEL and GroES, and is found (usually) in bacteria and organelles of bacterial origin. The group II chaperonin system, called the thermosome in Archaea and TRiC or CCT in the Eukaryota, is structurally similar but only distantly related. Prefoldin, also called GimC, is a complex in Archaea and Eukaryota, that works with group II chaperonins. Members of this protein family are the archaeal clade of the beta class of prefoldin subunit. Closely related, but outside the scope of this family are the eukaryotic beta-class prefoldin subunits, Gim-1,3,4 and 6. The alpha class prefoldin subunits are more distantly related.
Probab=23.57 E-value=1.2e+02 Score=29.04 Aligned_cols=75 Identities=21% Similarity=0.314 Sum_probs=35.9
Q ss_pred hhhcccceeeEeeccccccCCcccccccccchhhhhccHHHHhhhHHHHHHHhhhhhhhHHHhhhhhhhhccchhhHHHH
Q 002212 749 NRRQENEKVLFAIDNIEKVDHPQRNWNLGGKATELLKSEEEKTKLQTELKLCRERLGVVKREFEDLTKKSWKIDSDLQTV 828 (953)
Q Consensus 749 ~~~~e~e~vl~~idn~~~~~~~~~~~~~~gka~~llk~ee~~~kl~~e~k~~~e~l~~~~~e~~~~~~~~~~~~~~~~~~ 828 (953)
.+..|.+.| +|.+..+|+...-+..-|...=. ..+......++...+.+ ...|+.+.++..++..++..+
T Consensus 31 ~~~~E~~~v---~~eL~~l~~d~~vyk~VG~vlv~----~~~~e~~~~l~~r~e~i---e~~i~~lek~~~~l~~~l~e~ 100 (110)
T TIGR02338 31 AQLKEAEKA---LEELERLPDDTPVYKSVGNLLVK----TDKEEAIQELKEKKETL---ELRVKTLQRQEERLREQLKEL 100 (110)
T ss_pred HHHHHHHHH---HHHHHcCCCcchhHHHhchhhhe----ecHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHH
Confidence 334445544 45555666667777777774322 22333333333222222 444555555555555555555
Q ss_pred HHHHH
Q 002212 829 QMEIQ 833 (953)
Q Consensus 829 ~~~~~ 833 (953)
+..++
T Consensus 101 q~~l~ 105 (110)
T TIGR02338 101 QEKIQ 105 (110)
T ss_pred HHHHH
Confidence 44444
No 206
>PF15082 DUF4549: Domain of unknown function (DUF4549)
Probab=23.09 E-value=3.3e+02 Score=28.23 Aligned_cols=23 Identities=30% Similarity=0.186 Sum_probs=18.9
Q ss_pred hhhhHHHHHHHHhhHHHHHHHHH
Q 002212 350 NEENEFLRMQAIHNQAEMETLRK 372 (953)
Q Consensus 350 ~~Ene~Lr~~~~~~~~El~~~~k 372 (953)
+.|.+.|-+|++-++.|++.|-+
T Consensus 70 VaeakPLviQadvmqrElEscl~ 92 (144)
T PF15082_consen 70 VAEAKPLVIQADVMQRELESCLR 92 (144)
T ss_pred HhhccchhHHHHHHHHHHHHHhh
Confidence 34556788999999999999977
No 207
>KOG4809 consensus Rab6 GTPase-interacting protein involved in endosome-to-TGN transport [Intracellular trafficking, secretion, and vesicular transport]
Probab=22.46 E-value=1.6e+03 Score=28.22 Aligned_cols=279 Identities=22% Similarity=0.228 Sum_probs=139.6
Q ss_pred hhHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHH--HHHHHHHHH-------HHHHHHhHHHHHHHHHHhhcCCCchhh
Q 002212 215 KDYELALVGAFRREKEKDISLQALAAENQAALRLA--KQREDEIQG-------LKMRLRFREAGIKRLEAVASGKISAET 285 (953)
Q Consensus 215 ~~~e~~lv~a~RrekEke~~LkkL~aEle~~~~Lv--~qREeeiqs-------~KM~LRfREdkI~rLE~l~~g~~sae~ 285 (953)
++.+..+-.+.+...+++..|++|.++++.- .+. .+..++.+- .-|.-+ =+..|++|.. +
T Consensus 253 ~~~e~riEtqkqtl~ardesIkkLlEmLq~k-gmg~~~~~~df~~~~~~a~~~~h~r~~-~er~IerLke---------q 321 (654)
T KOG4809|consen 253 PSGEQRIETQKQTLDARDESIKKLLEMLQRK-GMGRSNQPRDFTKANLSAHEMAHMRMK-VERIIERLKE---------Q 321 (654)
T ss_pred chHHHHHHHHHhhhhhHHHHHHHHHHHHHHh-hcccccchhhHHHHHHhHHHHHhhhch-HHHHHHHhcc---------h
Confidence 3444444455666677777788777766641 111 011112111 111112 2456666642 2
Q ss_pred hHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHhhHhhhccCCccccCCCCCCCcccchhhhHHHHHHHHhhHH
Q 002212 286 HLLKEKEECLKEIESFYEGGEREMMSQQIMVLQNKLLEALDWKLMHESDSSAVQEPGSPWRTSVNEENEFLRMQAIHNQA 365 (953)
Q Consensus 286 ~Ll~Ene~L~eEIq~LqeegERE~lleeIs~Lqd~Lle~ld~k~~~e~~~v~~~~~~~~~~~s~~~Ene~Lr~~~~~~~~ 365 (953)
....|.+ ..++|... ..|+..+-+.|..||--|-+.-..- .-..++...|-.-+.+...
T Consensus 322 r~rderE-~~EeIe~~--~ke~kdLkEkv~~lq~~l~eke~sl------------------~dlkehassLas~glk~ds 380 (654)
T KOG4809|consen 322 RERDERE-RLEEIESF--RKENKDLKEKVNALQAELTEKESSL------------------IDLKEHASSLASAGLKRDS 380 (654)
T ss_pred hhhhHHH-HHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHH------------------HHHHHHHHHHHHHhhhhhh
Confidence 2333322 33555532 3456688888998888654422211 1133555666666677778
Q ss_pred HHHHHHHHhhhhHHHHHHHHHHHHHHHHHHhhccCchhhhhhhhc-ccccCCCccccchhhHHHHHHHHHHHHhhhhHHH
Q 002212 366 EMETLRKQLEFSLDEKEKLERHVSDLVKKLEEQTCPISAKEETQG-FQLSTNVPTINFDDQVELKTMVDAIAVASQREAE 444 (953)
Q Consensus 366 El~~~~k~l~~clEen~kl~r~i~~L~~el~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~q~e~kt~v~aia~asq~~~e 444 (953)
++.++-=-|.+-.|+..+|++.+.+-+.-+-+.+-...+...-.. +...+.+..--..+|-+++.+..-.+-.-|-..+
T Consensus 381 ~Lk~leIalEqkkEec~kme~qLkkAh~~~ddar~~pe~~d~i~~le~e~~~y~de~~kaqaevdrlLeilkeveneKnD 460 (654)
T KOG4809|consen 381 KLKSLEIALEQKKEECSKMEAQLKKAHNIEDDARMNPEFADQIKQLEKEASYYRDECGKAQAEVDRLLEILKEVENEKND 460 (654)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHhhHhhhcChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcc
Confidence 888887778888888888888877766655555444333222110 0011111112334555555555555555565555
Q ss_pred hhhhhhhccccchhhHHHHHHHHhhhhhhhhccHHHHHHHHHHHHhhhhhhHHH--HHHHHHHHHHHHHHHHHHHHhHHH
Q 002212 445 AHQTAIGLSKMHDELRLELEVLNKEKSEFNKLNDELQLKHKVLIEEKSNLIELY--ERKEMEMKREAENLELQLAEMNEE 522 (953)
Q Consensus 445 ~~~~~i~l~k~~~~~~~~~e~~~~~~~e~~~ln~e~~~~~~~l~e~~~~l~~~~--~~~~~~~~~~~~~L~~ql~e~~~e 522 (953)
-+.++-+++++ +--+|+-- .-.+|+.-.|-.+.+-.+- -|...-+-.. .+++.
T Consensus 461 kdkkiaeler~--------------~kdqnkkv--aNlkHk~q~Ekkk~aq~lee~rrred~~~d~----sqhlq----- 515 (654)
T KOG4809|consen 461 KDKKIAELERH--------------MKDQNKKV--ANLKHKQQLEKKKNAQLLEEVRRREDSMADN----SQHLQ----- 515 (654)
T ss_pred ccchhhhcCch--------------hhhhhhHH--hhHHHHHHHHHHHHHHHHHHHHHHHhhhcch----HHHHH-----
Confidence 55555555544 00011100 0122333333333222211 1111111111 11111
Q ss_pred HHHHhhHHHHHhhhHHHHHHHHhhhcCC
Q 002212 523 NEKLLGLYEKAMQERDEFKRMISLCGQN 550 (953)
Q Consensus 523 n~kl~~lye~am~e~d~~~r~~~~~~~~ 550 (953)
-+++|--.||.=||=|+-|-++++--++
T Consensus 516 ~eel~~alektkQel~~tkarl~stqqs 543 (654)
T KOG4809|consen 516 IEELMNALEKTKQELDATKARLASTQQS 543 (654)
T ss_pred HHHHHHHHHHHhhChhhhhhHHHHHHHH
Confidence 4577888888889999999998876555
No 208
>PRK10869 recombination and repair protein; Provisional
Probab=22.29 E-value=1.5e+03 Score=27.75 Aligned_cols=63 Identities=17% Similarity=0.167 Sum_probs=41.7
Q ss_pred HHHHHHHHHHHhhhhhhHHH---HHHHHHHHHHHHHHHHHHHHhHHHHHHHhhHHHHHhhhHHHHHH
Q 002212 479 ELQLKHKVLIEEKSNLIELY---ERKEMEMKREAENLELQLAEMNEENEKLLGLYEKAMQERDEFKR 542 (953)
Q Consensus 479 e~~~~~~~l~e~~~~l~~~~---~~~~~~~~~~~~~L~~ql~e~~~en~kl~~lye~am~e~d~~~r 542 (953)
.+..+++.+|..-..+.+-+ .....+..+++.-|+-|++|+...|-+ -|=|+.--++++.|..
T Consensus 154 ~~~~~~~~~y~~~~~~~~~l~~l~~~~~~~~~~~d~l~fql~Ei~~~~l~-~gE~eeL~~e~~~L~n 219 (553)
T PRK10869 154 SLLQEMRAAYQLWHQSCRDLAQHQQQSQERAARKQLLQYQLKELNEFAPQ-PGEFEQIDEEYKRLAN 219 (553)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHhCCCC-CCcHHHHHHHHHHHHH
Confidence 34444444444444333333 334567778899999999999999876 6777777777776654
No 209
>KOG0249 consensus LAR-interacting protein and related proteins [General function prediction only]
Probab=22.15 E-value=1.3e+03 Score=29.91 Aligned_cols=47 Identities=21% Similarity=0.256 Sum_probs=22.2
Q ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHHhhcCCCchhhhHHHHHHHHHH
Q 002212 249 AKQREDEIQGLKMRLRFREAGIKRLEAVASGKISAETHLLKEKEECLK 296 (953)
Q Consensus 249 v~qREeeiqs~KM~LRfREdkI~rLE~l~~g~~sae~~Ll~Ene~L~e 296 (953)
+++-++-..++.-.+..-+.++...-+ +.....+++.|...+.++..
T Consensus 107 lrq~eekn~slqerLelaE~~l~qs~r-ae~lpeveael~qr~~al~~ 153 (916)
T KOG0249|consen 107 LRQNEEKNRSLQERLELAEPKLQQSLR-AETLPEVEAELAQRNAALTK 153 (916)
T ss_pred hchhHHhhhhhhHHHHHhhHhhHhHHh-hhhhhhhHHHHHHHHHHHHH
Confidence 333333344444344444444443222 23334556677777766553
No 210
>PRK10884 SH3 domain-containing protein; Provisional
Probab=22.05 E-value=3.4e+02 Score=29.35 Aligned_cols=48 Identities=8% Similarity=0.113 Sum_probs=22.7
Q ss_pred hhhhhhhHhhhHhHhHhhHHHHHHhhhhhhhHHHHHHhHHHHHhHhHH
Q 002212 700 STYLNQKKEQLVHLECCKREIEDALGKVQRSEAELRNNLALLKSKLEE 747 (953)
Q Consensus 700 ~~~~~~k~~~l~~l~~~k~~~~~~~~~~~~~e~e~~~~~~~~k~k~~~ 747 (953)
+.||.....--.+|...++++..+..+..+...+..+..+.+..++..
T Consensus 82 ~~~Ls~~p~~~~rlp~le~el~~l~~~l~~~~~~~~~~~~~l~~~~~~ 129 (206)
T PRK10884 82 LKQLSTTPSLRTRVPDLENQVKTLTDKLNNIDNTWNQRTAEMQQKVAQ 129 (206)
T ss_pred HHHhcCCccHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHH
Confidence 344444444445555555555555554444444444444444444433
No 211
>smart00787 Spc7 Spc7 kinetochore protein. This domain is found in cell division proteins which are required for kinetochore-spindle association.
Probab=21.96 E-value=1.2e+03 Score=26.65 Aligned_cols=78 Identities=19% Similarity=0.224 Sum_probs=46.2
Q ss_pred hhccccchhhHHHHHHHHhhhhhhhhccHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHh
Q 002212 450 IGLSKMHDELRLELEVLNKEKSEFNKLNDELQLKHKVLIEEKSNLIELYERKEMEMKREAENLELQLAEMNEENEKLL 527 (953)
Q Consensus 450 i~l~k~~~~~~~~~e~~~~~~~e~~~ln~e~~~~~~~l~e~~~~l~~~~~~~~~~~~~~~~~L~~ql~e~~~en~kl~ 527 (953)
-.+..-|+.|..++..++....|++..-.+.-.+++.=+.....-+....+++.+.+.++.++...+.+..+....+.
T Consensus 175 ~~l~~~~~~L~~e~~~L~~~~~e~~~~d~~eL~~lk~~l~~~~~ei~~~~~~l~e~~~~l~~l~~~I~~~~~~k~e~~ 252 (312)
T smart00787 175 PKLRDRKDALEEELRQLKQLEDELEDCDPTELDRAKEKLKKLLQEIMIKVKKLEELEEELQELESKIEDLTNKKSELN 252 (312)
T ss_pred HHHHHHHHHHHHHHHHHHHhHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334445666677777777777777766665555555545555555555555566666666666665555554444443
No 212
>KOG0946 consensus ER-Golgi vesicle-tethering protein p115 [Intracellular trafficking, secretion, and vesicular transport]
Probab=21.91 E-value=1.9e+03 Score=28.87 Aligned_cols=57 Identities=14% Similarity=0.239 Sum_probs=35.4
Q ss_pred hhhhhhhhccHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHhhHHHH
Q 002212 468 KEKSEFNKLNDELQLKHKVLIEEKSNLIELYERKEMEMKREAENLELQLAEMNEENEKLLGLYEK 532 (953)
Q Consensus 468 ~~~~e~~~ln~e~~~~~~~l~e~~~~l~~~~~~~~~~~~~~~~~L~~ql~e~~~en~kl~~lye~ 532 (953)
+.+.++-++-+|.+ .+-++..+++.++..|-++..+++-.+ .|...+.+...|.||-
T Consensus 901 nl~lki~s~kqeqe-e~~v~~~~~~~~i~alk~~l~dL~q~~-------eeie~e~~s~~~e~e~ 957 (970)
T KOG0946|consen 901 NLSLKIVSNKQEQE-ELLVLLADQKEKIQALKEALEDLNQPV-------EEIEDEKVSIIGEQEA 957 (970)
T ss_pred cchhcccchhhhHH-HHHHHHhhHHHHHHHHHHHHHHhCCCh-------hhHHhhhhcccchhhh
Confidence 44556666665544 456788888888877666655555444 4455555566666653
No 213
>PF06632 XRCC4: DNA double-strand break repair and V(D)J recombination protein XRCC4; InterPro: IPR010585 This entry represents the DNA double-strand break repair and V(D)J recombination protein XRCC4, which is found in certain Metazoans, fungi and plants. XRCC4 binds to DNA, and to DNA ligase IV (LIG4) to form the LIG4-XRCC4 complex []. The LIG4-XRCC4 complex is responsible for the ligation step in the non-homologous end joining (NHEJ) pathway of DNA double-strand break repair. XRCC4 enhances the joining activity of LIG4. It is thought that XRCC4 and LIG4 are essential for alignment-based gap filling, as well as for final ligation of the breaks []. Binding of the LIG4-XRCC4 complex to DNA ends is dependent on the assembly of the DNA-dependent protein kinase complex DNA-PK to these DNA ends. ; GO: 0003677 DNA binding, 0006302 double-strand break repair, 0006310 DNA recombination, 0005634 nucleus; PDB: 3RWR_R 1IK9_B 3SR2_E 3Q4F_H 3II6_B 1FU1_A 3MUD_B.
Probab=20.97 E-value=6.5e+02 Score=29.34 Aligned_cols=71 Identities=23% Similarity=0.295 Sum_probs=60.1
Q ss_pred HHHHHHHHHHHHHHHHHHhHHHHHHHhhHHHHHhhhHHHHHHHHhhhcCCccccccccccccchhhccccccccccchhh
Q 002212 501 KEMEMKREAENLELQLAEMNEENEKLLGLYEKAMQERDEFKRMISLCGQNRAEASGEIYCPEKLVEIDGEAAFADMETEQ 580 (953)
Q Consensus 501 ~~~~~~~~~~~L~~ql~e~~~en~kl~~lye~am~e~d~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 580 (953)
.+..+...+..|+.+.+.+..+..++..-||+.+.+++++-.-|
T Consensus 138 ~~~~l~~~~~~L~~enerL~~e~~~~~~qlE~~v~~K~~~E~~L------------------------------------ 181 (342)
T PF06632_consen 138 ANSRLQAENEHLQKENERLESEANKLLKQLEKFVNAKEEHEEDL------------------------------------ 181 (342)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------------------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------------------------------------
Confidence 45666677788888999999999999999999999999987766
Q ss_pred hchhhhhhhhhHHHHHHHHHHHHHHhhhhhh
Q 002212 581 LNLANIKVTEDLNLVRLKLEKAQEKLSDSAN 611 (953)
Q Consensus 581 ~~~~~~~~~~~l~~~~~k~~~~~~~~~~~~~ 611 (953)
..+|.-+||-=+.||...++.|..+..
T Consensus 182 ----~~KF~~vLNeKK~KIR~lq~~L~~~~~ 208 (342)
T PF06632_consen 182 ----YAKFVLVLNEKKAKIRELQRLLASAKE 208 (342)
T ss_dssp ----HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ----HHHHHHHHHhHHHHHHHHHHHHHHhhc
Confidence 347889999999999999998877644
No 214
>KOG4253 consensus Tryptophan-rich basic nuclear protein [General function prediction only]
Probab=20.70 E-value=1.9e+02 Score=30.62 Aligned_cols=40 Identities=25% Similarity=0.410 Sum_probs=30.7
Q ss_pred HHHhhHHHHHHHHHHhhhhH-----HHHHHHHHHHHHHHHHHhhc
Q 002212 359 QAIHNQAEMETLRKQLEFSL-----DEKEKLERHVSDLVKKLEEQ 398 (953)
Q Consensus 359 ~~~~~~~El~~~~k~l~~cl-----Een~kl~r~i~~L~~el~~~ 398 (953)
+-.++..|+.++.+++++.. -.-++|+|+||+|..+++-+
T Consensus 45 k~~q~~~ei~dmKqelnavs~qD~fAkwaRlnRKi~kl~~ele~q 89 (175)
T KOG4253|consen 45 KESQKVAEIQDMKQELNAVSMQDNFAKWARLNRKINKLDKELETQ 89 (175)
T ss_pred HHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45667788888888777654 34578999999999999544
No 215
>PRK09343 prefoldin subunit beta; Provisional
Probab=20.52 E-value=5.1e+02 Score=25.53 Aligned_cols=22 Identities=14% Similarity=0.312 Sum_probs=15.2
Q ss_pred eccccccCCcccccccccchhh
Q 002212 761 IDNIEKVDHPQRNWNLGGKATE 782 (953)
Q Consensus 761 idn~~~~~~~~~~~~~~gka~~ 782 (953)
++.+..+++.-.-|...|...=
T Consensus 44 ~~EL~~L~~d~~VYk~VG~vlv 65 (121)
T PRK09343 44 LEELEKLPDDTPIYKIVGNLLV 65 (121)
T ss_pred HHHHHcCCCcchhHHHhhHHHh
Confidence 4556666677777888888753
No 216
>TIGR02338 gimC_beta prefoldin, beta subunit, archaeal. Chaperonins are cytosolic, ATP-dependent molecular chaperones, with a conserved toroidal architecture, that assist in the folding of nascent and/or denatured polypeptide chains. The group I chaperonin system consists of GroEL and GroES, and is found (usually) in bacteria and organelles of bacterial origin. The group II chaperonin system, called the thermosome in Archaea and TRiC or CCT in the Eukaryota, is structurally similar but only distantly related. Prefoldin, also called GimC, is a complex in Archaea and Eukaryota, that works with group II chaperonins. Members of this protein family are the archaeal clade of the beta class of prefoldin subunit. Closely related, but outside the scope of this family are the eukaryotic beta-class prefoldin subunits, Gim-1,3,4 and 6. The alpha class prefoldin subunits are more distantly related.
Probab=20.26 E-value=7.7e+02 Score=23.64 Aligned_cols=99 Identities=19% Similarity=0.271 Sum_probs=56.2
Q ss_pred hhhhhhHhhhhhHHHHHHhhhhhhHHhhHHHHhHHHHHhHHHhhhhhcccccchhhHHHHHHHhhhhccccchhhhhh-h
Q 002212 628 KLSGDIVAMEDSIQAKQQQCGSLKHLCSEMQERKALVDNKLMALKYSLSSFSSSAAYFEQRAARSRARVTTSSTYLNQ-K 706 (953)
Q Consensus 628 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~k~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~-k 706 (953)
.+....+.....++.-.+++..|....++.. ++.+= |+.+.+.+.||..--. -++.+ +
T Consensus 7 ~~~~~~q~~q~~~~~l~~q~~~le~~~~E~~----~v~~e-------L~~l~~d~~vyk~VG~----------vlv~~~~ 65 (110)
T TIGR02338 7 NQLAQLQQLQQQLQAVATQKQQVEAQLKEAE----KALEE-------LERLPDDTPVYKSVGN----------LLVKTDK 65 (110)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHH-------HHcCCCcchhHHHhch----------hhheecH
Confidence 3444444444444444444444444443332 23332 3445577777765521 12222 3
Q ss_pred HhhhHhHhHhhHHHHHHhhhhhhhHHHHHHhHHHHHhHhHH
Q 002212 707 KEQLVHLECCKREIEDALGKVQRSEAELRNNLALLKSKLEE 747 (953)
Q Consensus 707 ~~~l~~l~~~k~~~~~~~~~~~~~e~e~~~~~~~~k~k~~~ 747 (953)
.+-+..|......++....+.......|++++..+..+|++
T Consensus 66 ~e~~~~l~~r~e~ie~~i~~lek~~~~l~~~l~e~q~~l~~ 106 (110)
T TIGR02338 66 EEAIQELKEKKETLELRVKTLQRQEERLREQLKELQEKIQE 106 (110)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33346666677777888888888888888888888888765
Done!