Your job contains 1 sequence.
>002216
MASAASISQIQYPPTCSTSTTTATRKALNIFNTKRDDGSSKILHFLHSCSSSSSSSSSFP
VNLKSSSSKPTRLRPRPLQDSIQSNFMENIENSVDFHIPTCEQEQNFHQRVENTETCADL
VIPRSENSTNHQLMCLEPRRRIFVQDPPWFSSIFLKGLYKRIKLQEYREMKKRKFNLLRR
RQVKQETEAWERMVDEYKELEAKMIEKRLAPNLPHIKGLFLGWFGPLSEAIEREQKMQRT
KKQKAAYAPHIELLPADKVAVIVMHKMMGLVMAGHEDRCVQVVQAAVHIGMAIEQEIRIH
SFLEKTKNYKRKKIIADTEEVLSKEKELLRKRVNSLIKSKRVMEAQKLLKNEETKPWGRD
TQAKLGSRLVELLIETAYVQHPVNPADYSPPDVRPAFRHRFKTILKHPGQKTTKRYGVVE
CDPLVLEGLDRSAKHMLIPYVPMLVPPKKWKGYNKGGYLFLPSYVMRTHGSRKQQEALKS
VTGNCMKKVFEALDTLGSTKWRVNKQVLSVLESIWVSGGNIAGLVDRNDVLIPEKPLSED
MTEVQKWKWSVRKAKKINQERHSQRCDTELKLSVARRMKDEEGFYYPHNLDFRGRAYPMH
PHLNHLSSDVCRGVLEFAEGRPLGKSGLRWLKIHLANLFSGGVEKLSHDGRLAFVENHLY
EIFDSAENPINGSRWWLTAEDPFQCLAACINLSEALKSSSPHSVISHLPIHQDGSCNGLQ
HYAALGRNTLEAAAVNLVAGEKPADVYSEIAVRVHEIMKRDSNKDPSKHPQALLAKILID
QVDRKLVKQTVMTSVYGVTFVGAREQIKRRLEEKGHITDDRQLFAAACYAAKVTLTALGE
IFEAARSIMGWLGDCAKVIASENQPVRWTTPLGLPVVQPYCKNERHLIRTSLQVLALQRE
GNLVKIRKQRTAFPPNFVHSLDGSHMMMTAVACRDAGLHFAGLSFQSALESV
BLASTP 2.0MP-WashU [04-May-2006] [linux26-i686-ILP32F64 2006-05-09T11:47:08]
Copyright (C) 1996-2006 Washington University, Saint Louis, Missouri USA.
All Rights Reserved.
Reference: Gish, W. (1996-2006) http://blast.wustl.edu
Query= 002216
(952 letters)
Database: go_20130330-seqdb.fasta
368,745 sequences; 169,044,731 total letters.
Searching....10....20....30....40....50....60....70....80....90....100% done
Smallest
Sum
High Probability
Sequences producing High-scoring Segment Pairs: Score P(N) N
TAIR|locus:2047515 - symbol:SCA3 "SCABRA 3" species:3702 ... 3325 0. 1
UNIPROTKB|P69242 - symbol:RPOT3 "DNA-directed RNA polymer... 3203 0. 1
UNIPROTKB|Q8VWF8 - symbol:RPOT2 "DNA-directed RNA polymer... 2762 6.3e-289 2
UNIPROTKB|Q93Y94 - symbol:RPOT1 "DNA-directed RNA polymer... 2743 1.6e-285 1
DICTYBASE|DDB_G0267416 - symbol:rpmA "DNA-dependent RNA p... 1162 2.1e-124 2
ASPGD|ASPL0000068622 - symbol:AN7609 species:162425 "Emer... 1034 2.7e-124 2
SGD|S000001858 - symbol:RPO41 "Mitochondrial RNA polymera... 1152 1.1e-118 2
POMBASE|SPAC26H5.12 - symbol:rpo41 "mitochondrial RNA pol... 1130 1.3e-114 1
CGD|CAL0005126 - symbol:RPO41 species:5476 "Candida albic... 1024 5.5e-111 2
RGD|1304599 - symbol:Polrmt "polymerase (RNA) mitochondri... 1035 3.9e-108 2
ZFIN|ZDB-GENE-050208-458 - symbol:si:dkey-21e2.1 "si:dkey... 1065 1.0e-107 1
UNIPROTKB|F1PCF7 - symbol:POLRMT "DNA-directed RNA polyme... 1042 2.8e-105 1
UNIPROTKB|J9P8Y8 - symbol:POLRMT "DNA-directed RNA polyme... 1042 2.8e-105 1
MGI|MGI:1915843 - symbol:Polrmt "polymerase (RNA) mitocho... 1020 7.3e-105 2
UNIPROTKB|K7EKS3 - symbol:POLRMT "DNA-directed RNA polyme... 1038 7.5e-105 1
UNIPROTKB|O00411 - symbol:POLRMT "DNA-directed RNA polyme... 1038 7.5e-105 1
UNIPROTKB|E1BZ13 - symbol:POLRMT "DNA-directed RNA polyme... 1025 1.8e-103 1
UNIPROTKB|E1BCZ0 - symbol:POLRMT "DNA-directed RNA polyme... 971 1.6e-100 2
FB|FBgn0261938 - symbol:mtRNApol "mitochondrial RNA polym... 939 2.4e-96 2
GENEDB_PFALCIPARUM|PF11_0264 - symbol:PF11_0264 "DNA-depe... 571 8.4e-83 4
UNIPROTKB|Q8IIB0 - symbol:PF11_0264 "DNA-directed RNA pol... 571 8.4e-83 4
WB|WBGene00013680 - symbol:Y105E8A.23 species:6239 "Caeno... 669 3.5e-74 3
CGD|CAL0002343 - symbol:orf19.6499 species:5476 "Candida ... 444 1.0e-54 4
UNIPROTKB|Q5AH39 - symbol:CaO19.13852 "DNA-directed RNA p... 444 1.0e-54 4
UNIPROTKB|K7ESD1 - symbol:POLRMT "DNA-directed RNA polyme... 126 7.4e-07 1
>TAIR|locus:2047515 [details] [associations]
symbol:SCA3 "SCABRA 3" species:3702 "Arabidopsis
thaliana" [GO:0003677 "DNA binding" evidence=IEA;ISS] [GO:0003899
"DNA-directed RNA polymerase activity" evidence=IEA;ISS]
[GO:0006351 "transcription, DNA-dependent" evidence=IEA;ISS]
[GO:0009507 "chloroplast" evidence=ISM] [GO:0005739 "mitochondrion"
evidence=IDA] [GO:0005515 "protein binding" evidence=IPI]
InterPro:IPR002092 InterPro:IPR024075 Pfam:PF00940 PROSITE:PS00489
PROSITE:PS00900 GO:GO:0005739 GO:GO:0009507 EMBL:CP002685
GenomeReviews:CT485783_GR GO:GO:0003677 GO:GO:0006351 EMBL:AC005967
GO:GO:0003899 eggNOG:COG5108 KO:K10908 Gene3D:1.10.287.260
PANTHER:PTHR10102 EMBL:Y08722 EMBL:Y08463 IPI:IPI00536028
PIR:G84632 RefSeq:NP_179989.1 UniGene:At.21683
ProteinModelPortal:O24600 SMR:O24600 IntAct:O24600 STRING:O24600
PRIDE:O24600 EnsemblPlants:AT2G24120.1 GeneID:816946
KEGG:ath:AT2G24120 GeneFarm:2877 TAIR:At2g24120
HOGENOM:HOG000241996 InParanoid:O24600 OMA:TQAKLGS PhylomeDB:O24600
ProtClustDB:CLSN2683020 Genevestigator:O24600 Uniprot:O24600
Length = 993
Score = 3325 (1175.5 bits), Expect = 0., P = 0.
Identities = 635/859 (73%), Positives = 730/859 (84%)
Query: 90 IENSVDFHIPTCEQEQNFHQRVENTETCADLVIPRSENSTNHQLMCLEPRRRIFVQDPPW 149
I NSV FH E +N T A L I EN L RRR+F+QDPPW
Sbjct: 74 ISNSVHFHGNLIESFENQDSSYAGTIKGASL-IEELENPVERN--GLSGRRRLFMQDPPW 130
Query: 150 FSSIFLKGLYKRIK--LQ-EYREMKKRKFNLLRRRQVKQETEAWERMVDEYKELEAKMIE 206
S++FLKGL K + L+ E +++ KRKF+ LRRRQVK+ETEAWERMVDEY++LE +M E
Sbjct: 131 ISALFLKGLSKMVDQTLKIERKDIDKRKFDSLRRRQVKEETEAWERMVDEYRDLEKEMCE 190
Query: 207 KRLAPNLPHIKGLFLGWFGPLSEAIEREQKMQRTKKQK--AAYAPHIELLPADKVAVIVM 264
K LAPNLP++K +FLGWF PL + IEREQK+Q+ K +K AAYAPHIELLPADK+AVIVM
Sbjct: 191 KNLAPNLPYVKHMFLGWFQPLKDVIEREQKLQKNKSKKVRAAYAPHIELLPADKMAVIVM 250
Query: 265 HKMMGLVMAGHEDRCVQVVQAAVHIGMAIEQEIRIHSFLEKTKNYKRKKIIADTEEVLSK 324
HKMMGLVM+GHED C+QVVQAAV IG+AIEQE+RIH+FL++T RK D++E L K
Sbjct: 251 HKMMGLVMSGHEDGCIQVVQAAVSIGIAIEQEVRIHNFLKRT----RKNNAGDSQEEL-K 305
Query: 325 EKELLRKRVNSLIKSKRVMEAQKLLKNEETKPWGRDTQAKLGSRLVELLIETAYVQHPVN 384
EK+LLRKRVNSLI+ KR+++A K++K+E TKPWGR TQAKLGSRL+ELLIE AYVQ P+
Sbjct: 306 EKQLLRKRVNSLIRRKRIIDALKVVKSEGTKPWGRATQAKLGSRLLELLIEAAYVQPPLT 365
Query: 385 PADYSPPDVRPAFRHRFKTILKHPGQKTTKRYGVVECDPLVLEGLDRSAKHMLIPYVPML 444
+ S P+ RPAFRHRFKT+ K+PG K +RYGV+ECD L+L GLD+SAKHMLIPYVPML
Sbjct: 366 QSGDSIPEFRPAFRHRFKTVTKYPGSKLVRRYGVIECDSLLLAGLDKSAKHMLIPYVPML 425
Query: 445 VPPKKWKGYNKGGYLFLPSYVMRTHGSRKQQEALKSVTGNCMKKVFEALDTLGSTKWRVN 504
VPPK+WKGY+KGGYLFLPSY+MRTHGS+KQQ+ALK ++ +VFEALDTLG+TKWRVN
Sbjct: 426 VPPKRWKGYDKGGYLFLPSYIMRTHGSKKQQDALKDISHKTAHRVFEALDTLGNTKWRVN 485
Query: 505 KQVLSVLESIWVSGGNIAGLVDRNDVLIPEKPLSEDMTEVQKWKWSVRKAKKINQERHSQ 564
+ +L V+E +W GGNIAGLV+R DV IPEKP SED E+Q WKWS RKA KIN+ERHS
Sbjct: 486 RNILDVVERLWADGGNIAGLVNREDVPIPEKPSSEDPEELQSWKWSARKANKINRERHSL 545
Query: 565 RCDTELKLSVARRMKDEEGFYYPHNLDFRGRAYPMHPHLNHLSSDVCRGVLEFAEGRPLG 624
RCD ELKLSVAR+MKDEEGFYYPHNLDFRGRAYPMHPHLNHLSSD+CRG LEFAEGRPLG
Sbjct: 546 RCDVELKLSVARKMKDEEGFYYPHNLDFRGRAYPMHPHLNHLSSDLCRGTLEFAEGRPLG 605
Query: 625 KSGLRWLKIHLANLFSGGVEKLSHDGRLAFVENHLYEIFDSAENPINGSRWWLTAEDPFQ 684
KSGL WLKIHLANL++GGVEKLSHD RLAFVENHL +I DSAENPI+G RWWL AEDPFQ
Sbjct: 606 KSGLHWLKIHLANLYAGGVEKLSHDARLAFVENHLDDIMDSAENPIHGKRWWLKAEDPFQ 665
Query: 685 CLAACINLSEALKSSSPHSVISHLPIHQDGSCNGLQHYAALGRNTLEAAAVNLVAGEKPA 744
CLAAC+ L++ALKS SP+SVISHLPIHQDGSCNGLQHYAALGR++ EAAAVNLVAGEKPA
Sbjct: 666 CLAACVILTQALKSPSPYSVISHLPIHQDGSCNGLQHYAALGRDSFEAAAVNLVAGEKPA 725
Query: 745 DVYSEIAVRVHEIMKRDSNKDPSKHPQALLAKILIDQVDRKLVKQTVMTSVYGVTFVGAR 804
DVYSEI+ RVHEIMK+DS+KDP +P A LAKILI QVDRKLVKQTVMTSVYGVT+VGAR
Sbjct: 726 DVYSEISRRVHEIMKKDSSKDPESNPTAALAKILITQVDRKLVKQTVMTSVYGVTYVGAR 785
Query: 805 EQIKRRLEEKGHITDDRQLFAAACYAAKVTLTALGEIFEAARSIMGWLGDCAKVIASENQ 864
EQIKRRLEEKG ITD+R LFAAACY+AKVTL ALGEIFEAAR+IM WLGDCAK+IAS+N
Sbjct: 786 EQIKRRLEEKGVITDERMLFAAACYSAKVTLAALGEIFEAARAIMSWLGDCAKIIASDNH 845
Query: 865 PVRWTTPLGLPVVQPYCKNERHLIRTSLQVLALQREGNLVKIRKQRTAFPPNFVHSLDGS 924
PVRW TPLGLPVVQPYC++ERHLIRTSLQVLALQREGN V +RKQRTAFPPNFVHSLDG+
Sbjct: 846 PVRWITPLGLPVVQPYCRSERHLIRTSLQVLALQREGNTVDVRKQRTAFPPNFVHSLDGT 905
Query: 925 HMMMTAVACRDAGLHFAGL 943
HMMMTAVACR+AGL+FAG+
Sbjct: 906 HMMMTAVACREAGLNFAGV 924
>UNIPROTKB|P69242 [details] [associations]
symbol:RPOT3 "DNA-directed RNA polymerase 3, chloroplastic"
species:4096 "Nicotiana sylvestris" [GO:0009536 "plastid"
evidence=IDA] InterPro:IPR002092 InterPro:IPR024075 Pfam:PF00940
PROSITE:PS00489 PROSITE:PS00900 GO:GO:0009507 GO:GO:0009536
GO:GO:0003677 GO:GO:0006351 GO:GO:0003899 Gene3D:1.10.287.260
PANTHER:PTHR10102 EMBL:AB084950 EMBL:AB084951 EMBL:AJ302020
ProteinModelPortal:P69242 Uniprot:P69242
Length = 977
Score = 3203 (1132.6 bits), Expect = 0., P = 0.
Identities = 610/882 (69%), Positives = 734/882 (83%)
Query: 70 PTRLRPRPLQ-DSIQSNFMENIENSVDFHIPTCEQEQNFHQRVENTETCADLVIPRSENS 128
PT P+ L+ IQ NI++ + T ++N + V N + A+ V+ + N
Sbjct: 44 PTSSFPKTLKLPVIQMPINNNIQSQTTVCVST---DENLEELV-NLQKIANGVLTKESN- 98
Query: 129 TNHQLMCLEPRRRIFVQDPPWFSSIFLKGLYKRIKL-----QEYREM-KKRKFNLLRRRQ 182
+R+F+QDPPW SS+F+ L+ R K +E+RE+ ++R++ +LRRRQ
Sbjct: 99 -----------KRVFIQDPPWVSSLFMNSLFVRAKQVQGVRREFREIERRRRYAMLRRRQ 147
Query: 183 VKQETEAWERMVDEYKELEAKMIEKRLAPNLPHIKGLFLGWFGPLSEAIEREQKMQRTKK 242
+K ETEAWE+MV+EY+ELE +M EK+LAPNLP++K L LGWF PL +AIE+EQ + T K
Sbjct: 148 IKAETEAWEQMVEEYRELEREMCEKKLAPNLPYVKKLLLGWFEPLRQAIEKEQNAETTVK 207
Query: 243 QKAAYAPHIELLPADKVAVIVMHKMMGLVM-AGHEDRCVQVVQAAVHIGMAIEQEIRIHS 301
+AA+APHI+ LPADK+AVIVMHK+MGL+M G E+RCVQVVQAAV IGMA+E E+RIH+
Sbjct: 208 HRAAFAPHIDSLPADKMAVIVMHKLMGLLMMGGKEERCVQVVQAAVQIGMAVENEVRIHN 267
Query: 302 FLEKTKNYKRKKIIADTEEVLSKEKELLRKRVNSLIKSKRVMEAQKLLKNEETKPWGRDT 361
FLEKTK ++ A ++E +S+E +LRKRV SLIK RV+E +KL+K+EE + WGRDT
Sbjct: 268 FLEKTKKLQKHMTGAQSQEDMSRETMILRKRVKSLIKRNRVVEVRKLMKSEEPESWGRDT 327
Query: 362 QAKLGSRLVELLIETAYVQHPVNPADYSPPDVRPAFRHRFKTILKHPGQKTTKRYGVVEC 421
QAKLG RL+ELL ETAYVQ PV+ + +PPD+RPAFRH F+ + PG+ K+YGV+EC
Sbjct: 328 QAKLGCRLLELLTETAYVQPPVDQSADTPPDIRPAFRHVFRIATRDPGKSIVKKYGVIEC 387
Query: 422 DPLVLEGLDRSAKHMLIPYVPMLVPPKKWKGYNKGGYLFLPSYVMRTHGSRKQQEALKSV 481
DPLV+ G+DR+ K M+IPYVPMLVPPKKW+GY+KGGYLFLPSY+MRTHGSR+QQ+A++SV
Sbjct: 388 DPLVVAGVDRTVKQMMIPYVPMLVPPKKWRGYDKGGYLFLPSYLMRTHGSRRQQDAVRSV 447
Query: 482 TGNCMKKVFEALDTLGSTKWRVNKQVLSVLESIWVSGGNIAGLVDRNDVLIPEKPLSEDM 541
M++V+EALDTLGSTKWRVNK++LSV+ESIW GGNIAGLVDR DV IPE S+D+
Sbjct: 448 PTKQMQQVYEALDTLGSTKWRVNKRILSVVESIWAGGGNIAGLVDRKDVPIPELH-SDDI 506
Query: 542 TEVQKWKWSVRKAKKINQERHSQRCDTELKLSVARRMKDEEGFYYPHNLDFRGRAYPMHP 601
EV+KWKW VRK+KKINQE HSQRCDTELKLSVAR++KDEEGFYYPHNLDFRGRAYPMHP
Sbjct: 507 MEVKKWKWRVRKSKKINQELHSQRCDTELKLSVARKLKDEEGFYYPHNLDFRGRAYPMHP 566
Query: 602 HLNHLSSDVCRGVLEFAEGRPLGKSGLRWLKIHLANLFSGGVEKLSHDGRLAFVENHLYE 661
HLNHLSSD+CRG+LEFAEGRPLGKSGLRWLKIHLA+L++GG+EKL +D RLAFVENH+ +
Sbjct: 567 HLNHLSSDLCRGILEFAEGRPLGKSGLRWLKIHLASLYAGGIEKLCYDARLAFVENHIDD 626
Query: 662 IFDSAENPINGSRWWLTAEDPFQCLAACINLSEALKSSSPHSVISHLPIHQDGSCNGLQH 721
I DSA NP+NG+RWWL AEDPFQCLAACINLSEALKSSSPH+V SHLPIHQDGSCNGLQH
Sbjct: 627 ILDSANNPLNGNRWWLNAEDPFQCLAACINLSEALKSSSPHTVFSHLPIHQDGSCNGLQH 686
Query: 722 YAALGRNTLEAAAVNLVAGEKPADVYSEIAVRVHEIMKRDSNKDPSKHPQALLAKILIDQ 781
YAALGR+++EAAAVNLVAG+KPADVY+EIA+RV I++ DS KDP+ P ALLAK+LIDQ
Sbjct: 687 YAALGRDSMEAAAVNLVAGDKPADVYTEIALRVDHIIRGDSIKDPATDPNALLAKLLIDQ 746
Query: 782 VDRKLVKQTVMTSVYGVTFVGAREQIKRRLEEKGHITDDRQLFAAACYAAKVTLTALGEI 841
VDRKLVKQTVMTSVYGVT+VGAREQIKRRLEEKG I DDR LF A+CYAAKVTL ALGE+
Sbjct: 747 VDRKLVKQTVMTSVYGVTYVGAREQIKRRLEEKGLIDDDRLLFTASCYAAKVTLAALGEL 806
Query: 842 FEAARSIMGWLGDCAKVIASENQPVRWTTPLGLPVVQPYCKNERHLIRTSLQVLALQREG 901
F+AAR M WLGDCAKVIASENQPVRWTTPLGLPVVQPY K +RH+IRTSLQVLALQREG
Sbjct: 807 FQAARGTMTWLGDCAKVIASENQPVRWTTPLGLPVVQPYFKTQRHVIRTSLQVLALQREG 866
Query: 902 NLVKIRKQRTAFPPNFVHSLDGSHMMMTAVACRDAGLHFAGL 943
+ V++RKQRTAFPPNFVHSLDGSHMMMTAVACRDAGL FAG+
Sbjct: 867 DTVEVRKQRTAFPPNFVHSLDGSHMMMTAVACRDAGLQFAGV 908
>UNIPROTKB|Q8VWF8 [details] [associations]
symbol:RPOT2 "DNA-directed RNA polymerase 2,
chloroplastic/mitochondrial" species:4096 "Nicotiana sylvestris"
[GO:0005739 "mitochondrion" evidence=IDA] [GO:0009536 "plastid"
evidence=IDA] InterPro:IPR002092 InterPro:IPR024075 Pfam:PF00940
PROSITE:PS00489 PROSITE:PS00900 GO:GO:0005739 GO:GO:0009507
GO:GO:0009536 GO:GO:0003677 GO:GO:0006351 GO:GO:0003899
Gene3D:1.10.287.260 PANTHER:PTHR10102 EMBL:AB058957 EMBL:AB058958
EMBL:AJ302019 ProteinModelPortal:Q8VWF8 Uniprot:Q8VWF8
Length = 1020
Score = 2762 (977.3 bits), Expect = 6.3e-289, Sum P(2) = 6.3e-289
Identities = 507/776 (65%), Positives = 640/776 (82%)
Query: 170 MKKRKFNLLRRRQVKQETEAWERMVDEYKELEAKMIEKRLAPNLPHIKGLFLGWFGPLSE 229
M RK+ L+RRQVK ETEAWE+ EYKEL M E++LAPNLP++K LFLGWF PL +
Sbjct: 177 MGHRKYQTLKRRQVKVETEAWEQAAKEYKELLFDMCEQKLAPNLPYVKSLFLGWFEPLRD 236
Query: 230 AIEREQKMQRTKKQKAAYAPHIELLPADKVAVIVMHKMMGLVMAGHEDRCVQVVQAAVHI 289
I EQ++ K KAAYA + LPAD +AVI MHK+MGL+M G + +VVQAA+ I
Sbjct: 237 KIAEEQELCSQGKSKAAYAKYFYQLPADMMAVITMHKLMGLLMTGGDHGTARVVQAALVI 296
Query: 290 GMAIEQEIRIHSFLEKTKNYKRKKIIADTE-EVLSKEKELLRKRVNSLIKSKRVMEAQKL 348
G AIEQE+RIH+FLEKTK K +K + E +++E+E LRK+V +L+K +++ ++
Sbjct: 297 GDAIEQEVRIHNFLEKTKKQKAEKDKQKEDGEHVTQEQEKLRKKVTNLMKKQKLRAVGQI 356
Query: 349 LKNEE-TKPWGRDTQAKLGSRLVELLIETAYVQHPVNPADYSPPDVRPAFRHRFKTILKH 407
++ ++ +KPWG+D +AK+GSRL++LL++TAY+Q P N PPD+RPAF H +T+ K
Sbjct: 357 VRRQDDSKPWGQDARAKVGSRLIDLLLQTAYIQPPANQLAVDPPDIRPAFVHSVRTVAKE 416
Query: 408 PGQKTTKRYGVVECDPLVLEGLDRSAKHMLIPYVPMLVPPKKWKGYNKGGYLFLPSYVMR 467
+ ++RYG+++CD LV +GL+R+A+HM+IPY+PMLVPP KW GY+KGG+L+LPSYVMR
Sbjct: 417 T-KSASRRYGIIQCDELVFKGLERTARHMVIPYMPMLVPPVKWTGYDKGGHLYLPSYVMR 475
Query: 468 THGSRKQQEALKSVTGNCMKKVFEALDTLGSTKWRVNKQVLSVLESIWVSGGNIAGLVDR 527
THG+R+Q+EA+K + N ++ VFEALDTLG+TKWR+NK+VLSV++ IW GG +A LVDR
Sbjct: 476 THGARQQREAVKRASRNQLQPVFEALDTLGNTKWRINKRVLSVVDRIWAGGGRLADLVDR 535
Query: 528 NDVLIPEKPLSEDMTEVQKWKWSVRKAKKINQERHSQRCDTELKLSVARRMKDEEGFYYP 587
+D +PE+P +ED KW+W V+ KK N+ERHSQRCD ELKL+VAR+MKDEE F+YP
Sbjct: 536 DDAPLPEEPDTEDEALRTKWRWKVKSVKKENRERHSQRCDIELKLAVARKMKDEESFFYP 595
Query: 588 HNLDFRGRAYPMHPHLNHLSSDVCRGVLEFAEGRPLGKSGLRWLKIHLANLFSGGVEKLS 647
HN+DFRGRAYPMHPHLNHL SD+CRGVLEFAEGRPLG+SGLRWLKIHLANLF+GGVEKLS
Sbjct: 596 HNVDFRGRAYPMHPHLNHLGSDICRGVLEFAEGRPLGESGLRWLKIHLANLFAGGVEKLS 655
Query: 648 HDGRLAFVENHLYEIFDSAENPINGSRWWLTAEDPFQCLAACINLSEALKSSSPHSVISH 707
+GR+ F ENH+ +IFDS++ P+ G RWWL AEDPFQCLA CINLSEA++SSSP + +SH
Sbjct: 656 LEGRIGFTENHMDDIFDSSDKPLEGRRWWLNAEDPFQCLAVCINLSEAVRSSSPETSVSH 715
Query: 708 LPIHQDGSCNGLQHYAALGRNTLEAAAVNLVAGEKPADVYSEIAVRVHEIMKRDSNKDPS 767
+P+HQDGSCNGLQHYAALGR+ L AAAVNLVAGEKPADVYS IA RV +IMKRD+ +DP+
Sbjct: 716 IPVHQDGSCNGLQHYAALGRDKLGAAAVNLVAGEKPADVYSGIAARVLDIMKRDAQRDPA 775
Query: 768 KHPQALLAKILIDQVDRKLVKQTVMTSVYGVTFVGAREQIKRRLEEKGHITDDRQLFAAA 827
+ P A+ A++L++QVDRKLVKQTVMTSVYGVT++GAR+QIKRRL+E+G I DD +LF AA
Sbjct: 776 EFPDAVRARVLVNQVDRKLVKQTVMTSVYGVTYIGARDQIKRRLKERGAIADDSELFGAA 835
Query: 828 CYAAKVTLTALGEIFEAARSIMGWLGDCAKVIASENQPVRWTTPLGLPVVQPYCKNERHL 887
CYAAKVTLTALGE+FEAARSIM WLG+CAK+IASEN+PVRWTTPLGLPVVQPY K RHL
Sbjct: 836 CYAAKVTLTALGEMFEAARSIMTWLGECAKIIASENEPVRWTTPLGLPVVQPYRKIGRHL 895
Query: 888 IRTSLQVLALQREGNLVKIRKQRTAFPPNFVHSLDGSHMMMTAVACRDAGLHFAGL 943
I+TSLQ+L LQRE V +++QRTAFPPNF+HSLDGSHMMMTAVACR AGL+FAG+
Sbjct: 896 IKTSLQILTLQRETEKVMVKRQRTAFPPNFIHSLDGSHMMMTAVACRRAGLNFAGV 951
Score = 37 (18.1 bits), Expect = 6.3e-289, Sum P(2) = 6.3e-289
Identities = 10/41 (24%), Positives = 19/41 (46%)
Query: 164 LQEYREMKKRKFNLLRRRQVKQETEAWERMVDEYKELEAKM 204
L E ++ +K++F RR+Q + R K + K+
Sbjct: 152 LTELKKEEKKQFAFRRRKQRMLTSGMGHRKYQTLKRRQVKV 192
>UNIPROTKB|Q93Y94 [details] [associations]
symbol:RPOT1 "DNA-directed RNA polymerase 1, mitochondrial"
species:4096 "Nicotiana sylvestris" [GO:0005739 "mitochondrion"
evidence=IDA] InterPro:IPR002092 InterPro:IPR024075 Pfam:PF00940
PROSITE:PS00489 PROSITE:PS00900 GO:GO:0005739 GO:GO:0003677
GO:GO:0006351 GO:GO:0003899 Gene3D:1.10.287.260 PANTHER:PTHR10102
EMBL:AB058956 EMBL:AB058954 EMBL:AJ416568 ProteinModelPortal:Q93Y94
Uniprot:Q93Y94
Length = 1002
Score = 2743 (970.6 bits), Expect = 1.6e-285, P = 1.6e-285
Identities = 505/774 (65%), Positives = 632/774 (81%)
Query: 174 KFNLLRRRQVKQETEAWERMVDEYKELEAKMIEKRLAPNLPHIKGLFLGWFGPLSEAIER 233
K+NLLRRRQ+K ETEAWE EY+EL M E++LAPNLP++K LFLGWF PL +AI
Sbjct: 165 KYNLLRRRQIKVETEAWEEAAKEYQELLMDMCEQKLAPNLPYMKSLFLGWFEPLRDAIAA 224
Query: 234 EQKMQRTKKQKAAYAPHIELLPADKVAVIVMHKMMGLVMAGHEDRCVQVVQAAVHIGMAI 293
EQK+ K + AYAP + LPA+ +AVI MHK+MGL+M G +VVQAA HIG AI
Sbjct: 225 EQKLCDEGKNRGAYAPFFDQLPAEMMAVITMHKLMGLLMTGGGTGSARVVQAASHIGEAI 284
Query: 294 EQEIRIHSFLEKTKNYKRKKIIADTEEV---LSKEKELLRKRVNSLIKSKRVMEAQKLLK 350
E E RIH FLEKTK K + D E+ + KE+E +RK+V L+K +++ + +K++K
Sbjct: 285 EHEARIHRFLEKTK--KSNALSGDLEDTPGDIMKERERVRKKVKILMKKQKLQQVRKIVK 342
Query: 351 NEET-KPWGRDTQAKLGSRLVELLIETAYVQHPVNPADYSPPDVRPAFRHRFKTILKHPG 409
++ KPWG+D K+G RL+++L+ETAY+Q P + D PPD+RPAF H KT+
Sbjct: 343 QQDDEKPWGQDNLVKVGCRLIQILMETAYIQPPNDQLDDCPPDIRPAFVHTLKTV---ET 399
Query: 410 QKTTKRYGVVECDPLVLEGLDRSAKHMLIPYVPMLVPPKKWKGYNKGGYLFLPSYVMRTH 469
K ++RYGV++CDPLV +GLD++A+HM+IPY+PMLVPP+ W GY+KG YLFLPSY+MRTH
Sbjct: 400 MKGSRRYGVIQCDPLVRKGLDKTARHMVIPYMPMLVPPQSWLGYDKGAYLFLPSYIMRTH 459
Query: 470 GSRKQQEALKSVTGNCMKKVFEALDTLGSTKWRVNKQVLSVLESIWVSGGNIAGLVDRND 529
G+++Q+EA+K V ++ VF+ALDTLG+TKWR+N++VL +++ IW SGG +A LVDR D
Sbjct: 460 GAKQQREAVKRVPKKQLEPVFQALDTLGNTKWRLNRKVLGIVDRIWASGGRLADLVDRED 519
Query: 530 VLIPEKPLSEDMTEVQKWKWSVRKAKKINQERHSQRCDTELKLSVARRMKDEEGFYYPHN 589
V +PE+P +ED +++KWKW V+ KK N ERHSQRCD ELKL+VAR+MKDE+GFYYPHN
Sbjct: 520 VPLPEEPDAEDEAQIRKWKWKVKGVKKENCERHSQRCDIELKLAVARKMKDEDGFYYPHN 579
Query: 590 LDFRGRAYPMHPHLNHLSSDVCRGVLEFAEGRPLGKSGLRWLKIHLANLFSGGVEKLSHD 649
LDFRGRAYPMHP+LNHL SD+CRG+LEFAEGRPLGKSGLRWLKIHLAN++ GGV+KLS++
Sbjct: 580 LDFRGRAYPMHPYLNHLGSDLCRGILEFAEGRPLGKSGLRWLKIHLANVYGGGVDKLSYE 639
Query: 650 GRLAFVENHLYEIFDSAENPINGSRWWLTAEDPFQCLAACINLSEALKSSSPHSVISHLP 709
GR+AF ENH+ +IFDSAE P+ G RWWL AEDPFQCLA CIN++EAL+S SP + IS++P
Sbjct: 640 GRVAFSENHVEDIFDSAERPLEGKRWWLGAEDPFQCLATCINIAEALRSPSPETAISYMP 699
Query: 710 IHQDGSCNGLQHYAALGRNTLEAAAVNLVAGEKPADVYSEIAVRVHEIMKRDSNKDPSKH 769
IHQDGSCNGLQHYAALGR+TL AAAVNLVAG+KPADVYS IA RV +IMKRD+ KDP+
Sbjct: 700 IHQDGSCNGLQHYAALGRDTLGAAAVNLVAGDKPADVYSGIAARVLDIMKRDAAKDPAND 759
Query: 770 PQALLAKILIDQVDRKLVKQTVMTSVYGVTFVGAREQIKRRLEEKGHITDDRQLFAAACY 829
P + A++LI+QVDRKLVKQTVMTSVYGVT++GAR+QIKRRL+E+G I DD +LFAAACY
Sbjct: 760 PNVMRARLLINQVDRKLVKQTVMTSVYGVTYIGARDQIKRRLKERGVIEDDNELFAAACY 819
Query: 830 AAKVTLTALGEIFEAARSIMGWLGDCAKVIASENQPVRWTTPLGLPVVQPYCKNERHLIR 889
AAK TLTALGE+FEAARSIM WLGDCAK+IA EN PVRWTTPLGLPVVQPY K RHLI+
Sbjct: 820 AAKTTLTALGEMFEAARSIMSWLGDCAKIIAMENHPVRWTTPLGLPVVQPYRKLGRHLIK 879
Query: 890 TSLQVLALQREGNLVKIRKQRTAFPPNFVHSLDGSHMMMTAVACRDAGLHFAGL 943
TSLQ+L LQRE + V +++QRTAFPPNFVHSLDGSHMMMTA+AC+++GL FAG+
Sbjct: 880 TSLQILTLQRETDKVMVKRQRTAFPPNFVHSLDGSHMMMTAIACKESGLSFAGV 933
>DICTYBASE|DDB_G0267416 [details] [associations]
symbol:rpmA "DNA-dependent RNA polymerase"
species:44689 "Dictyostelium discoideum" [GO:0006390 "transcription
from mitochondrial promoter" evidence=IDA] [GO:0003899
"DNA-directed RNA polymerase activity" evidence=IEA;IDA]
[GO:0003677 "DNA binding" evidence=IEA;IC] [GO:0006351
"transcription, DNA-dependent" evidence=IEA] [GO:0005759
"mitochondrial matrix" evidence=ISS] [GO:0016779
"nucleotidyltransferase activity" evidence=IEA] [GO:0016740
"transferase activity" evidence=IEA] InterPro:IPR002092
InterPro:IPR024075 Pfam:PF00940 PROSITE:PS00489 PROSITE:PS00900
dictyBase:DDB_G0267416 GenomeReviews:CM000150_GR GO:GO:0005759
GO:GO:0003677 EMBL:AAFI02000003 GO:GO:0003899 GO:GO:0006390
eggNOG:COG5108 KO:K10908 Gene3D:1.10.287.260 PANTHER:PTHR10102
HSSP:P00573 EMBL:AF361480 EMBL:AY040092 RefSeq:XP_647347.1
ProteinModelPortal:Q95NZ8 EnsemblProtists:DDB0191106 GeneID:8616158
KEGG:ddi:DDB_G0267416 OMA:FINIDEQ ProtClustDB:CLSZ2729360
Uniprot:Q95NZ8
Length = 950
Score = 1162 (414.1 bits), Expect = 2.1e-124, Sum P(2) = 2.1e-124
Identities = 262/646 (40%), Positives = 382/646 (59%)
Query: 314 IIADTEEVLSKEKE-LLRKRVNSLIKSKRVMEAQKL-LKNEET---KPWGRDTQAKLGSR 368
+ A+ + ++ K+KE K+++ LI + + + L N + P +D + +G
Sbjct: 261 VYAEYKSLIVKKKEPKTYKKISKLIPNSALKKFYNLSTDNLDVIVLPPESKDIFS-IGEF 319
Query: 369 LVELLIETAYVQHPVNPADYSPPDVRPAFRHRFKTILKH--PGQKTTKRYGVVECDPLVL 426
LV + + +Q + D S PAF TI H G +TTK L+
Sbjct: 320 LVSQVFKHCTIQESLGE-DGSKQS--PAF-----TIQSHYANGVRTTKVIPHKNIFKLIE 371
Query: 427 EGLD-RSAKHMLIPYVPMLVPPKKWKGYNKGGYLFLPSYVMRTHGSRKQQEALKSVTGNC 485
G + R + PM++ P W +G YL +MRT+GS Q L+++ +
Sbjct: 372 AGHEIRETGGARL--FPMVIKPLPWITPTEGPYLHYKVPIMRTNGSAMQ---LRTLVDSD 426
Query: 486 MKKVFEALDTLGSTKWRVNKQVLSVLESIWVSGGNIAGLVDRNDVLIPEKPLSEDMT--- 542
M ++ AL+ LG T W +N+ + +V+ W +GGNI + R D PE +S+DM
Sbjct: 427 MSLIYRALNILGETPWVINRDLYNVILEAWANGGNIGDIPKRTDFEYPE--ISDDMLFDH 484
Query: 543 EVQKWKWSV-RKAKKINQERHSQRCDTELKLSVARRMKDEEGFYYPHNLDFRGRAYPMHP 601
E +K + ++ K +N HS RCDT KL VAR+ D Y+PHN+DFRGR+YP+ P
Sbjct: 485 EARKELYKKEQRIKSLNFNLHSLRCDTNYKLEVARKFLDHT-LYFPHNIDFRGRSYPIPP 543
Query: 602 HLNHLSSDVCRGVLEFAEGRPLGKSGLRWLKIHLANLFSGGVEKLSHDGRLAFVENHLYE 661
HLNHL SD CR +L+F + PLG+ GL WLKIH+ANL+ GV+K+ + RLAF E ++
Sbjct: 544 HLNHLGSDFCRSLLKFEKSLPLGEKGLEWLKIHVANLY--GVDKIPLNERLAFTERNMEN 601
Query: 662 IFDSAENPINGSRWWLTAEDPFQCLAACINLSEALKSSSPHSVISHLPIHQDGSCNGLQH 721
IFDS ++P+NG++WWL A++P+Q LAAC+ L++A++S P +S+LPIHQDG+CNGLQH
Sbjct: 602 IFDSVDSPLNGNKWWLKADNPWQTLAACMELTKAIRSGKPAEFLSNLPIHQDGTCNGLQH 661
Query: 722 YAALGRNTLEAAAVNLVAGEKPADVYSEIAVRVHEIMKRDSNKDPSKHPQALLAKILIDQ 781
YAALG + A VNL+ + P DVYS +A V +I++ D+ +A+ + +
Sbjct: 662 YAALGGDVWGAEKVNLLPSDCPQDVYSSVAQLVEQIVEEDAKNGDE------IAQFFLGK 715
Query: 782 VDRKLVKQTVMTSVYGVTFVGAREQIKRRLEEKGHITD-DRQ-LFAAACYAAKVTLTALG 839
VDRKLVKQTVMTSVYGVT++GAREQI+ + EK D D +F ++ Y K T +L
Sbjct: 716 VDRKLVKQTVMTSVYGVTYIGAREQIENAILEKFSDLDLDEDFIFKSSTYITKNTFASLN 775
Query: 840 EIFEAARSIMGWLGDCAKVIASENQPVRWTTPLGLPVVQPYCKNERHLIRT-SLQVLALQ 898
+F ARSIM W+ DCA +IA V W TPLGLPVVQPY K ++ IRT + +
Sbjct: 776 NMFVGARSIMKWMSDCATLIAKSGHCVTWNTPLGLPVVQPYKKGGKYNIRTLECDFIVVH 835
Query: 899 REGNL-VKIRKQRTAFPPNFVHSLDGSHMMMTAVACRDAGLHFAGL 943
+ L V +QR+AFPPNF+HSLD +HM +TA+ C D G+ ++ +
Sbjct: 836 NDDLLQVDSNRQRSAFPPNFIHSLDSTHMFLTAMTCYDQGITYSSV 881
Score = 81 (33.6 bits), Expect = 2.1e-124, Sum P(2) = 2.1e-124
Identities = 35/155 (22%), Positives = 69/155 (44%)
Query: 166 EYREMKKRKFNLLRRRQVKQETEAWERMVDEYKELEAKMIEKRLAPNLPHIKGLFLGWFG 225
+ +E+ + NL R+ Q E EA + V Y++L K + I+ + + W
Sbjct: 139 DVKEISDDEKNL-RKIQTLLEFEAIDDAVTRYRDLMLDSKGKSFVTSFKSIRDVLMQWNE 197
Query: 226 PLSEAIEREQKMQRTKKQKAAYAPHIELLPADKVAVIVMHKMMGL-VMAGHEDRCVQVVQ 284
L+E + QK TK Q AA+ ++ + K + ++ ++G V+ D ++
Sbjct: 198 GLTEKV---QKDLATKDQDAAWVTILKTVSVQKCILKSLNIIVGKSVLKDRYDFATNIII 254
Query: 285 AAVHIGMAIEQEIRIHSFLEKTKNYKR-KKIIADT 318
+ + + E + I E K YK+ K+I ++
Sbjct: 255 ETIGVSVYAEYKSLIVKKKEP-KTYKKISKLIPNS 288
>ASPGD|ASPL0000068622 [details] [associations]
symbol:AN7609 species:162425 "Emericella nidulans"
[GO:0003899 "DNA-directed RNA polymerase activity" evidence=IEA]
[GO:0006351 "transcription, DNA-dependent" evidence=IEA]
[GO:0001044 "mitochondrial RNA polymerase regulatory region
sequence-specific DNA binding" evidence=IEA] [GO:0005829 "cytosol"
evidence=IEA] [GO:0005739 "mitochondrion" evidence=IEA]
InterPro:IPR002092 InterPro:IPR024075 Pfam:PF00940 PROSITE:PS00489
PROSITE:PS00900 GO:GO:0003677 GO:GO:0006351 EMBL:BN001304
EMBL:AACD01000130 GO:GO:0003899 eggNOG:COG5108 KO:K10908
Gene3D:1.10.287.260 PANTHER:PTHR10102 OrthoDB:EOG4M0J8T
RefSeq:XP_680878.1 STRING:Q5AVS1 EnsemblFungi:CADANIAT00000724
GeneID:2869348 KEGG:ani:AN7609.2 HOGENOM:HOG000167182 OMA:LQAEDPW
Uniprot:Q5AVS1
Length = 1391
Score = 1034 (369.0 bits), Expect = 2.7e-124, Sum P(2) = 2.7e-124
Identities = 256/723 (35%), Positives = 395/723 (54%)
Query: 179 RRRQVKQETEAWERMVDEYKELEAKMIEKRLAPNL----PHIKGLFLGWFGPLSEAIERE 234
+RRQ + E + + V+ +++ E K I+++ P++ + L W L IE E
Sbjct: 348 QRRQQQLEADVMKSAVNRWRQ-ENK-IQQQFQPDVFENGKQLGPLLRQWNADLVVRIEEE 405
Query: 235 QK-MQRTK---------KQKAAYAPHIELLPADKVAVIVMHKMMGLVMAGHEDRCVQVVQ 284
K +++ + +++ Y P++ ++ +++A + + + + D+ +++
Sbjct: 406 FKEIEKARTASMITDEVRERVDYGPYLRMVKPEELASLTILTTINNLTRNGLDKGIKLAP 465
Query: 285 AAVHIGMAIEQEIRIHSFLEKTKNYKRKKIIADTEEVLSKEKELLRKRVNSLIKSKRVME 344
AV IG + +E+ + +E+ RKK + V ++ L ++ +K
Sbjct: 466 LAVAIGNDVYEEVALQRMVER-----RKKEMNSAHRVKLIKQIFLGRKDRDKLKGINWKN 520
Query: 345 AQKLLKNEETK-PWGRDTQAKLGSRLVELLIETAYVQHPVNPADYSPPDVRPAFRHRFKT 403
A K ++ EE W +AK+G+ L+ LL + A V PVN A + ++ +
Sbjct: 521 ALKSMEQEEPDIVWATAIKAKVGAVLMSLLYDVAKVPVPVNEAA-AAKKIKRRDEVVMQP 579
Query: 404 ILKHPGQKTT-KRYGVVECDPLVLEGLDRS-AKHMLIPYVPMLVPPKKWKGYNKGGYLFL 461
+ +H Q T +R G + +P +++ L R A+ +L +PML P+ WKGY G Y +
Sbjct: 580 VFQHSYQITWGRRTGYIHVNPEMIKLLTREPAEDLLGRQLPMLCKPRPWKGYKDGAYFYH 639
Query: 462 PS-YVMRTHGSRKQQEALKSVTGNC-MKKVFEALDTLGSTKWRVNKQVLSVLESIWVSGG 519
+ +V T G Q +K+ N +K + + LD LG T W +N+ V +V+ W +G
Sbjct: 640 QNLFVRSTPGESLQPTYVKAALENDGLKMIRKGLDILGGTGWVINRDVFNVMLEAWNTGE 699
Query: 520 NIAGLVDRN-DVLIPEKPLSEDMTEVQK-WKWSVRKAKKINQERHSQRCDTELKLSVARR 577
IA L + D+ IP KP E+ E +K W VR + HSQRC ++ VAR
Sbjct: 700 PIADLAPLDPDLPIPPKPSPEEGYEAEKEWHTKVRDIENQRGGYHSQRCFQNFQMEVARS 759
Query: 578 MKDEEGFYYPHNLDFRGRAYPMHPHLNHLSSDVCRGVLEFAEGRPLGKSGLRWLKIHLAN 637
+E FY PHN+DFRGRAYP+ P+LN +++D RG+L F+E +PLG+SGLRWLKI +AN
Sbjct: 760 YLNET-FYLPHNMDFRGRAYPIPPYLNQMAADNARGLLLFSEAKPLGESGLRWLKIQIAN 818
Query: 638 LFSGGVEKLSHDGRLAFVENHLYEIFDSAENPINGSRWWLTAEDPFQCLAACINLSEALK 697
L G +K S R F +HL ++ DSA N ++G RWWL AEDP+QCLAAC L AL+
Sbjct: 819 L--AGFDKASLSEREQFAMDHLDDVLDSANNGLHGRRWWLQAEDPWQCLAACCELRNALQ 876
Query: 698 SSSPHSVISHLPIHQDGSCNGLQHYAALGRNTLEAAAVNLVAGEKPADVYSEIAVRVHEI 757
+P S LPIHQDGSCNGLQHYAALG + L A VNL ++P+DVYS +A V E
Sbjct: 877 HPNPTEYASRLPIHQDGSCNGLQHYAALGGDKLGAQQVNLEPSDRPSDVYSAVAQYVKEA 936
Query: 758 MKRDSNK-DPSKHPQALLAKILIDQVDRKLVKQTVMTSVYGVTFVGAREQIKRRLEEKGH 816
+ ++ + DP +AK+L ++ RK+VKQTVMT+VYGVTF+GA +QI+++L
Sbjct: 937 VATEAAQGDP-------IAKMLEGKITRKVVKQTVMTNVYGVTFIGAMKQIRKQLANHYP 989
Query: 817 ITDDRQLFAAACYAAKVTLTALGEIFEAARSIMGWLGDCAKVIASENQPVRWTTPLGLPV 876
D + A Y A+ ALG +FE AR I WLGD A I +++ P L V
Sbjct: 990 ELSDHEKKTGAIYIARKVFQALGTMFEGARDIQHWLGDSANRI-TQSLPPEQIEDLAKEV 1048
Query: 877 VQP 879
+ P
Sbjct: 1049 LNP 1051
Score = 208 (78.3 bits), Expect = 2.7e-124, Sum P(2) = 2.7e-124
Identities = 42/80 (52%), Positives = 54/80 (67%)
Query: 866 VRWTTPLGLPVVQPYCKNERHLIRTSLQVLALQREGN--LVKIRKQRTAFPPNFVHSLDG 923
V WTTPLGLPVVQPY + TS Q L++ + + V RKQ AFPPNF+HSLD
Sbjct: 1081 VIWTTPLGLPVVQPYRNRLPRRVVTSFQSLSVVEQDSRYCVTRRKQLQAFPPNFIHSLDA 1140
Query: 924 SHMMMTAVACRDAGLHFAGL 943
+HMM++A+AC AGL F+ +
Sbjct: 1141 THMMLSAIACHQAGLTFSAV 1160
Score = 47 (21.6 bits), Expect = 1.0e-11, Sum P(3) = 1.0e-11
Identities = 15/68 (22%), Positives = 29/68 (42%)
Query: 553 KAKKINQERHSQRCDTELKLSVARRMKDEEGFYYPHNLDFRGRAYPMHPHLNHLSSD-VC 611
+++++ Q+R Q+ + ++ S R + E D + P L ++D V
Sbjct: 341 ESREVYQQRRQQQLEADVMKSAVNRWRQENKIQQQFQPDVFENGKQLGPLLRQWNADLVV 400
Query: 612 RGVLEFAE 619
R EF E
Sbjct: 401 RIEEEFKE 408
Score = 46 (21.3 bits), Expect = 1.0e-11, Sum P(3) = 1.0e-11
Identities = 14/44 (31%), Positives = 24/44 (54%)
Query: 293 IEQEIRIHSFLEKTKNYKRKKIIADTEEVLSKEKELLRKRVNSL 336
+ Q+ +SFL + +I +E+L+K K +LR RVN +
Sbjct: 93 LRQKQEWNSFLPSQGEFDPSSLIIMDDELLTKPK-ILR-RVNGI 134
>SGD|S000001858 [details] [associations]
symbol:RPO41 "Mitochondrial RNA polymerase" species:4932
"Saccharomyces cerevisiae" [GO:0006351 "transcription,
DNA-dependent" evidence=IEA] [GO:0003899 "DNA-directed RNA
polymerase activity" evidence=IEA;IDA] [GO:0005737 "cytoplasm"
evidence=IDA] [GO:0005739 "mitochondrion" evidence=IEA;IDA]
[GO:0000002 "mitochondrial genome maintenance" evidence=IMP]
[GO:0006390 "transcription from mitochondrial promoter"
evidence=IDA;IMP] [GO:0005759 "mitochondrial matrix" evidence=IDA]
[GO:0042645 "mitochondrial nucleoid" evidence=IDA] [GO:0016779
"nucleotidyltransferase activity" evidence=IEA] [GO:0016740
"transferase activity" evidence=IEA] [GO:0003677 "DNA binding"
evidence=IEA] [GO:0034245 "mitochondrial DNA-directed RNA
polymerase complex" evidence=IDA] InterPro:IPR002092
InterPro:IPR024075 Pfam:PF00940 PROSITE:PS00489 PROSITE:PS00900
SGD:S000001858 GO:GO:0003677 EMBL:D50617 EMBL:BK006940
GO:GO:0042645 GO:GO:0000002 GO:GO:0003899 GO:GO:0006390
GO:GO:0034245 eggNOG:COG5108 KO:K10908 Gene3D:1.10.287.260
PANTHER:PTHR10102 GeneTree:ENSGT00390000008060 OrthoDB:EOG4M0J8T
EMBL:M17539 PIR:S56218 RefSeq:NP_116617.1 ProteinModelPortal:P13433
DIP:DIP-2431N IntAct:P13433 MINT:MINT-500319 STRING:P13433
PaxDb:P13433 PeptideAtlas:P13433 PRIDE:P13433 EnsemblFungi:YFL036W
GeneID:850507 KEGG:sce:YFL036W HOGENOM:HOG000248537 OMA:HLIQDWL
NextBio:966215 Genevestigator:P13433 GermOnline:YFL036W
Uniprot:P13433
Length = 1351
Score = 1152 (410.6 bits), Expect = 1.1e-118, Sum P(2) = 1.1e-118
Identities = 268/661 (40%), Positives = 379/661 (57%)
Query: 318 TEEVLSKEKELLRKRVNSLIKS--KRVMEAQKLLKN---EETKP-WGRDTQAKLGSRLVE 371
+E+VL E + R VN K V A+ + ++ E++K W + +A++GS L+
Sbjct: 548 SEQVLKSESQAFRD-VNKKSPEFKKLVQNAKSVFRSSQIEQSKILWPQSIRARIGSVLIS 606
Query: 372 LLIETAYVQ-HPVNPADYSPPDVR-PAFRHRFKTILKHPGQKTTKRYGVVECDPLVLEGL 429
+LI+ A V V+P + PAF H ++ H G K GV++ ++ L
Sbjct: 607 MLIQVAKVSVQGVDPVTKAKVHGEAPAFAHGYQY---HNGSKL----GVLKIHKTLIRQL 659
Query: 430 --DRSAKHMLIPYVPMLVPPKKWKGYNKGGYLFLPSYVMRTHGSRKQQEALKSVTGNC-M 486
+R + +PMLV PK W + GGY + S ++RT S +Q LK+ + N +
Sbjct: 660 NGERLIASVQPQLLPMLVEPKPWVNWRSGGYHYTQSTLLRTKDSPEQVAYLKAASDNGDI 719
Query: 487 KKVFEALDTLGSTKWRVNKQVLSVLESIWVSGGNIAGLVDRND--VLIPEKPLSEDMTEV 544
+V++ L+ LG T W VN++V V+ +W G + D VL P P + D + +
Sbjct: 720 DRVYDGLNVLGRTPWTVNRKVFDVVSQVWNKGEGFLDIPGAQDEMVLPPAPPKNSDPSIL 779
Query: 545 QKWKWSVRK-AKKINQERHSQRCDTELKLSVARRMKDEEGFYYPHNLDFRGRAYPMHPHL 603
+ WK V+ A K + +R S RCDT KL +AR E+ Y+PHNLDFRGRAYP+ PH
Sbjct: 780 RAWKLQVKTIANKFSSDR-SNRCDTNYKLEIARAFLGEK-LYFPHNLDFRGRAYPLSPHF 837
Query: 604 NHLSSDVCRGVLEFAEGRPLGKSGLRWLKIHLANLFSGGVEKLSHDGRLAFVENHLYEIF 663
NHL +D+ RG+L F G+ LG SGL+WLKIHL+NLF G +KL R+AF E+HL +I
Sbjct: 838 NHLGNDMSRGLLIFWHGKKLGPSGLKWLKIHLSNLF--GFDKLPLKDRVAFTESHLQDIK 895
Query: 664 DSAENPINGSRWWLTAEDPFQCLAACINLSEALKSSSPHSVISHLPIHQDGSCNGLQHYA 723
DSAENP+ G RWW TA+ P+Q LA C L+E +K +P ISH P+HQDG+CNGLQHYA
Sbjct: 896 DSAENPLTGDRWWTTADKPWQALATCFELNEVMKMDNPEEFISHQPVHQDGTCNGLQHYA 955
Query: 724 ALGRNTLEAAAVNLVAGEKPADVYSEIAVRVHEIMKRDSNKDPSKHPQALLAKILIDQVD 783
ALG + A VNLV +KP DVY+ +A V + ++ + K AKIL D++
Sbjct: 956 ALGGDVEGATQVNLVPSDKPQDVYAHVARLVQKRLEIAAEKGDEN------AKILKDKIT 1009
Query: 784 RKLVKQTVMTSVYGVTFVGAREQIKRRLEEKGHITDDR-QLFAAACYAAKVTLTALGEIF 842
RK+VKQTVMT+VYGVT+VGA QI ++L I DDR + + Y K +A+ E+F
Sbjct: 1010 RKVVKQTVMTNVYGVTYVGATFQIAKQLSP---IFDDRKESLDFSKYLTKHVFSAIRELF 1066
Query: 843 EAARSIMGWLGDCAKVIASE-------------NQP-----VRWTTPLGLPVVQPYCKNE 884
+A I WLG+ AK I+ N+P V WTTPLGLP+VQPY +
Sbjct: 1067 HSAHLIQDWLGESAKRISKSIRLDVDEKSFKNGNKPDFMSSVIWTTPLGLPIVQPYREES 1126
Query: 885 RHLIRTSLQVLALQREG--NLVKIRKQRTAFPPNFVHSLDGSHMMMTAVACRDAGLHFAG 942
+ + T+LQ + + N V R+Q+ PPNF+HSLD SHM+++A C GL FA
Sbjct: 1127 KKQVETNLQTVFISDPFAVNPVNARRQKAGLPPNFIHSLDASHMLLSAAECGKQGLDFAS 1186
Query: 943 L 943
+
Sbjct: 1187 V 1187
Score = 481 (174.4 bits), Expect = 4.4e-42, P = 4.4e-42
Identities = 144/479 (30%), Positives = 227/479 (47%)
Query: 177 LLRRRQVKQETEAWERMVDEYKELEAKMIEKRLAPNL--------PHIKGLFLGWFGPLS 228
+L R + E W+ +E K IEK L L P +K LS
Sbjct: 418 VLENRATEAARERWKHDFEEAKARGDISIEKNLNVKLWKWYNEMLPLVKEEINHCRSLLS 477
Query: 229 EAIEREQKMQRTKKQKAAYAPHIELLPADKVAVIVMHKMMGLVMAGHEDRCVQVVQAAVH 288
E + ++ + + + Y P++ L+ K+ VI + +++ L G ++ +A +
Sbjct: 478 EKLSDKKGLNKVDTNRLGYGPYLTLIDPGKMCVITILELLKLNSTGGVIEGMRTARAVIS 537
Query: 289 IGMAIEQEIRIHSFLEKTKNYKRKKIIADTEEVLSKEKELLRKRVNSLIKSKRVMEAQKL 348
+G AIE E R L+ R D + + K+L++ S+ +S ++ E K+
Sbjct: 538 VGKAIEMEFRSEQVLKSESQAFR-----DVNKKSPEFKKLVQN-AKSVFRSSQI-EQSKI 590
Query: 349 LKNEETKPWGRDTQAKLGSRLVELLIETAYVQ-HPVNPADYSPPDVR-PAFRHRFKTILK 406
L W + +A++GS L+ +LI+ A V V+P + PAF H ++
Sbjct: 591 L-------WPQSIRARIGSVLISMLIQVAKVSVQGVDPVTKAKVHGEAPAFAHGYQY--- 640
Query: 407 HPGQKT-TKRYGVVECDPLVLEGLDRSAKHMLIPYVPMLVPPKKWK--GYNKGGYLFLPS 463
H G K + L E L S + L+P + P W+ GY+ L +
Sbjct: 641 HNGSKLGVLKIHKTLIRQLNGERLIASVQPQLLPMLVEPKPWVNWRSGGYHYTQSTLLRT 700
Query: 464 YVMRTHGSRKQQEALKSVTGNCMKKVFEALDTLGSTKWRVNKQVLSVLESIWVSGGNIAG 523
+ + S G+ + +V++ L+ LG T W VN++V V+ +W G
Sbjct: 701 ---KDSPEQVAYLKAASDNGD-IDRVYDGLNVLGRTPWTVNRKVFDVVSQVWNKGEGFLD 756
Query: 524 LVDRND--VLIPEKPLSEDMTEVQKWKWSVRK-AKKINQERHSQRCDTELKLSVARRMKD 580
+ D VL P P + D + ++ WK V+ A K + +R S RCDT KL +AR
Sbjct: 757 IPGAQDEMVLPPAPPKNSDPSILRAWKLQVKTIANKFSSDR-SNRCDTNYKLEIARAFLG 815
Query: 581 EEGFYYPHNLDFRGRAYPMHPHLNHLSSDVCRGVLEFAEGRPLGKSGLRWLKIHLANLF 639
E+ Y+PHNLDFRGRAYP+ PH NHL +D+ RG+L F G+ LG SGL+WLKIHL+NLF
Sbjct: 816 EK-LYFPHNLDFRGRAYPLSPHFNHLGNDMSRGLLIFWHGKKLGPSGLKWLKIHLSNLF 873
Score = 37 (18.1 bits), Expect = 1.1e-118, Sum P(2) = 1.1e-118
Identities = 6/32 (18%), Positives = 17/32 (53%)
Query: 163 KLQEYREMKKRKFNLLRRRQVKQETEAWERMV 194
K E++++ + ++ R Q++Q W + +
Sbjct: 565 KSPEFKKLVQNAKSVFRSSQIEQSKILWPQSI 596
>POMBASE|SPAC26H5.12 [details] [associations]
symbol:rpo41 "mitochondrial RNA polymerase Rpo41"
species:4896 "Schizosaccharomyces pombe" [GO:0000002 "mitochondrial
genome maintenance" evidence=ISS] [GO:0001044 "mitochondrial RNA
polymerase regulatory region sequence-specific DNA binding"
evidence=IDA] [GO:0003899 "DNA-directed RNA polymerase activity"
evidence=ISS] [GO:0005737 "cytoplasm" evidence=IDA] [GO:0005739
"mitochondrion" evidence=IDA] [GO:0005759 "mitochondrial matrix"
evidence=ISS] [GO:0005829 "cytosol" evidence=IDA] [GO:0006390
"transcription from mitochondrial promoter" evidence=ISS]
InterPro:IPR002092 InterPro:IPR024075 Pfam:PF00940 PROSITE:PS00489
PROSITE:PS00900 PomBase:SPAC26H5.12 GO:GO:0005829 EMBL:CU329670
GenomeReviews:CU329670_GR GO:GO:0005759 GO:GO:0000002 GO:GO:0003899
GO:GO:0006390 eggNOG:COG5108 Gene3D:1.10.287.260 PANTHER:PTHR10102
PIR:T38431 RefSeq:NP_594459.2 STRING:O13993
EnsemblFungi:SPAC26H5.12.1 GeneID:2542687 OrthoDB:EOG4M0J8T
NextBio:20803735 GO:GO:0001044 Uniprot:O13993
Length = 1154
Score = 1130 (402.8 bits), Expect = 1.3e-114, P = 1.3e-114
Identities = 282/807 (34%), Positives = 423/807 (52%)
Query: 175 FNLLRRRQVKQETEAWERMVDEYKELEAKMIEKRLAPNLP-HIKGLFLGWFGPLSEAIER 233
FNL R++ + E A + +K E + + R +P ++ LF W+ L + +
Sbjct: 284 FNLARQKLL--EKSAILSAAEVWKS-EHESVLNRGNLQVPKNVSSLFYSWYVQLEQLFKE 340
Query: 234 E----------QKMQRTKKQKAAYAPHIELLPADKVAVIVMHKMMGLVMAGHEDRCVQVV 283
E + + + K + Y P ++LL + K+A + + ++ L DR +V
Sbjct: 341 EISLIDDLALNESLDK-KNDRLIYGPFLKLLSSKKLAALTIMEVAQLSTNPRYDRGARVT 399
Query: 284 QAAVHIGMAIEQEIRIHSFL--EKTKNYKRKKIIADTEEVLSKEKELLRKRVNSLIKSKR 341
+G + E+E EK K+YK KK + + L + R+ V +L S
Sbjct: 400 TLLGGLGRSFEREFLSEQIQRQEKNKSYKDKKRLKE----LFNDPRKFRQAVKNLRLSNT 455
Query: 342 VMEAQKLLKNEETKPWGRDTQAKLGSRLVELLIETAYVQHPVNPADYSPPDVRP----AF 397
++ N W K+GS + LL+ A ++ V D S + AF
Sbjct: 456 ---RDNIVLNPSVDSWPSAIVMKVGSVALCLLLSVAKIE--VTAKDLSTGGILKQEVAAF 510
Query: 398 RHRFKTILKHPGQKTTKRYGVVECDPLVLEGLDRSAKHMLIPYVPMLVPPKKWKGYNKGG 457
H ++ G+K VE L+ +++ H + +PMLV PK W + GG
Sbjct: 511 VHTYQY---SNGRKVGMIVPHVEFYKLLSRDIEKPHLHPQL--LPMLVTPKPWTSWIDGG 565
Query: 458 YLFLPSYVMRTHGSRKQQEALKSVTGNC-MKKVFEALDTLGSTKWRVNKQVLSVLESIWV 516
Y + ++R G+ +Q + L + N + ++F+A+ +LG WR+N+++ +VL IW
Sbjct: 566 YYYSRQPLVRLKGALEQVDYLMKASENGQLDELFKAVSSLGKVSWRINQRLFNVLIRIWN 625
Query: 517 SGGNIAGLVDRNDVL-IPEKPLSEDMTEVQKWKWSVRKAK--KINQERHSQRCDTELKLS 573
SG + R +P P + K W R+ + + HSQRCD KL
Sbjct: 626 SGEKFLSIPPREVKCDMPPYP-KNSINPRDKVIWHTRRKELAALKTGAHSQRCDFNYKLE 684
Query: 574 VARRMKDEEGFYYPHNLDFRGRAYPMHPHLNHLSSDVCRGVLEFAEGRPLGKSGLRWLKI 633
+AR +E+ FY+PH+LDFRGRAYP+ HL+H+S+DVCRG+LEF+ G+PLG GL WLK+
Sbjct: 685 IARAFLNEK-FYFPHSLDFRGRAYPLSSHLHHVSNDVCRGLLEFSTGKPLGPKGLNWLKV 743
Query: 634 HLANLFSGGVEKLSHDGRLAFVENHLYEIFDSAENPINGSRWWLTAEDPFQCLAACINLS 693
HLANLF G+ K R AFV++++ E+FDSA+ P++G++WW A+DPFQ LAAC ++
Sbjct: 744 HLANLF--GISKKDFATRQAFVDDNMQEVFDSADRPLDGNKWWSKADDPFQALAACFEIA 801
Query: 694 EALKSSSPHSVISHLPIHQDGSCNGLQHYAALGRNTLEAAAVNLVAGEKPADVYSEIAVR 753
EA++S S ISH+PI QDG+CNGLQHYAALG + A VNL + P+DVY +A
Sbjct: 802 EAVRSGDHESYISHIPIQQDGTCNGLQHYAALGGDIEGAKQVNLWPSDHPSDVYEAVAEI 861
Query: 754 VHEIMKRDSNKDPSKHPQALLAKILIDQVDRKLVKQTVMTSVYGVTFVGAREQIKRRLEE 813
V +K+D+ +A L D+V R +VK TVMT+VYGVT+VGAR+QI +LE
Sbjct: 862 VRGFLKKDAEAGDE------MANFLKDKVTRSVVKPTVMTNVYGVTYVGARKQISEKLE- 914
Query: 814 KGHITDDRQLFAA--ACYAAKVTLTALGEIFEAARSIMGWLGDCAKVIA----------- 860
+I +L A A Y K AL +F A I WL C +I
Sbjct: 915 --NIDGMEKLKVADYANYLTKKVFEALRSLFTQAHEIQDWLSACCNLITHSLPADYIKEG 972
Query: 861 --SENQPVRWTTPLGLPVVQPYCKNERHLIRTSLQVLALQREGNLVKIR--KQRTAFPPN 916
E PV WTT L LP+VQPY + IRT+LQ + ++ ++ KQ TAFPPN
Sbjct: 973 IKDELTPVVWTTLLNLPIVQPYRNYKSRQIRTNLQTVFIEERDRTATVQPHKQATAFPPN 1032
Query: 917 FVHSLDGSHMMMTAVACRDAGLHFAGL 943
F+HSLD +HM MT + C + ++FA +
Sbjct: 1033 FIHSLDATHMFMTCLKCSEQNINFAAV 1059
>CGD|CAL0005126 [details] [associations]
symbol:RPO41 species:5476 "Candida albicans" [GO:0042645
"mitochondrial nucleoid" evidence=IEA] [GO:0005829 "cytosol"
evidence=IEA] [GO:0034245 "mitochondrial DNA-directed RNA
polymerase complex" evidence=IEA] [GO:0006390 "transcription from
mitochondrial promoter" evidence=IEA] [GO:0000002 "mitochondrial
genome maintenance" evidence=IEA] [GO:0003899 "DNA-directed RNA
polymerase activity" evidence=IEA] [GO:0001044 "mitochondrial RNA
polymerase regulatory region sequence-specific DNA binding"
evidence=IEA] InterPro:IPR002092 InterPro:IPR024075 Pfam:PF00940
PROSITE:PS00489 PROSITE:PS00900 CGD:CAL0005126 GO:GO:0003677
GO:GO:0006351 EMBL:AACQ01000036 EMBL:AACQ01000035 GO:GO:0003899
eggNOG:COG5108 KO:K10908 Gene3D:1.10.287.260 PANTHER:PTHR10102
RefSeq:XP_718901.1 RefSeq:XP_719003.1 STRING:Q5ABC9 GeneID:3639378
GeneID:3639479 KEGG:cal:CaO19.13462 KEGG:cal:CaO19.6041
Uniprot:Q5ABC9
Length = 1300
Score = 1024 (365.5 bits), Expect = 5.5e-111, Sum P(2) = 5.5e-111
Identities = 256/686 (37%), Positives = 364/686 (53%)
Query: 291 MAIEQEIRIHSFLEKTKNYKRKKIIADTEEVLSKEKE--LLRKRVNSLIKSKRVM-EAQK 347
+ I + ++HS + ++ K I + + E L K+ N L K + + QK
Sbjct: 475 ITILELFKLHSTGGVVRGFRAYKAIQSVGKAIEAEYRIGLQAKKENKLFSQKHLSPQLQK 534
Query: 348 LLK------NEETKPWGRDTQAKLGSRLVELLIETAYVQHPVNPADYSPPDVRPAFRHRF 401
L++ NE T W T+A++G LV +L+ A V D PAF H
Sbjct: 535 LMRRTMQKGNESTPEWDDATRARIGGVLVSILMSVAKVNVRKETPQGLIEDFHPAFYHGM 594
Query: 402 KTILKHPGQKTTKRYGVVECDPLVLEGLD-RSAKHMLIPY-VPMLVPPKKWKGYNKGGYL 459
+ I + R GV++ + L S + P +PMLV PK W + GG L
Sbjct: 595 QFIAGN-------RVGVIKVHTDISNILSGTSLTESIQPQALPMLVEPKPWNSFYGGGSL 647
Query: 460 FLPSYVMRTHGSRKQQEALKSVT--GNCMKKVFEALDTLGSTKWRVNKQVLSVLESIWVS 517
+ + ++R S + + LK+ GN + VFE L+ LG+T W VNK+V +V+ W S
Sbjct: 648 YSKTPLVRVKDSPETEAYLKAANERGN-LTGVFEGLNVLGNTAWTVNKKVFNVISHYWNS 706
Query: 518 GGNIAGL--VDRNDVLIPEKPLSEDMTEVQKWKWSVRKAKKINQERHSQRCDTELKLSVA 575
G + V L + P + D ++ S +A SQRCD +L +A
Sbjct: 707 GEEFLSIPPVSEEPQLPQDIPGNSDPQKLLHHTTSKYQALDEYISNKSQRCDNNYRLEIA 766
Query: 576 RRMKDEEGFYYPHNLDFRGRAYPMHPHLNHLSSDVCRGVLEFAEGRPLGKSGLRWLKIHL 635
R E+ ++PHNLDFRGRAYP+ PH NHL D+ R + F +G+ LG+ GL WLKI L
Sbjct: 767 RAFIGEK-LFFPHNLDFRGRAYPISPHFNHLGGDLTRSLFLFWDGKELGEEGLNWLKIQL 825
Query: 636 ANLFSGGVEKLSHDGRLAFVENHLYEIFDSAENPINGSRWWLTAEDPFQCLAACINLSEA 695
AN++ GV+K S R+ FV +L ++ +SA +P WW AE P+Q L+ C L+EA
Sbjct: 826 ANVY--GVDKESLAKRVEFVNENLEKVLESAADPFATDAWWQKAEKPWQALSVCFELAEA 883
Query: 696 LKSSSPHSVISHLPIHQDGSCNGLQHYAALGRNTLEAAAVNLVAGEKPADVYSEIAVRVH 755
K P +SHLP+HQDG+CNGLQHYAALG + A VNL +KP DVY+ +A V
Sbjct: 884 YKLDDPTKFVSHLPVHQDGTCNGLQHYAALGGDVEGANQVNLNPSDKPQDVYTYVAKLVE 943
Query: 756 EIMKRDSNKDPSKHPQALLAKILIDQVDRKLVKQTVMTSVYGVTFVGAREQIKRRLEEKG 815
+K D+ K LA L D++ RK+VKQTVMT+VYGVTF+GA EQI++++
Sbjct: 944 TRVKADAEKGDE------LAIFLQDKIKRKVVKQTVMTNVYGVTFIGAIEQIRKQII--- 994
Query: 816 HI-TDDRQLFAAACYAAKVTLTALGEIFEAARSIMGWLGDCAKVIAS-------ENQ--- 864
H+ D AAA Y A ++ E+FE A I WL + AK I E+Q
Sbjct: 995 HLFPKDADHHAAARYLAVQVFASIRELFENAHFIQAWLTESAKRITKSVTLDFGESQYSE 1054
Query: 865 -----PVRWTTPLGLPVVQPYCKNERHLIRTSLQVLALQREGNL--VKIRKQRTAFPPNF 917
V WTTPLGLP VQPY +++ ++T++Q L + N V RKQ+ FPPNF
Sbjct: 1055 QELLSTVIWTTPLGLPCVQPYRLHKKKQLKTAVQDLNIVMPSNTSAVDSRKQQNGFPPNF 1114
Query: 918 VHSLDGSHMMMTAVACRDAGLHFAGL 943
+HSLD +HM+MTA C + L+FA +
Sbjct: 1115 IHSLDATHMLMTATKCAEFDLNFASV 1140
Score = 92 (37.4 bits), Expect = 5.5e-111, Sum P(2) = 5.5e-111
Identities = 41/185 (22%), Positives = 77/185 (41%)
Query: 158 LYKRIKLQEYREMKKRKFNLLRRRQVKQ-ETEAWERMVDEYKELEAKMIEKRLAPNLPH- 215
+Y ++K +E R+ N+ + KQ E E +++K + + +KR NL
Sbjct: 355 MYSKLKTEEQRQAFNEALNVFNLERQKQIEIRGIEGAKEKWKH-DFEESQKRGDLNLSKG 413
Query: 216 IKGLFLGWFGPLSEAIEREQKM---------------QRTKKQKAAYAPHIELLPADKVA 260
+ W + +E+E K+ K +A YAP I + DK
Sbjct: 414 LNAQCYKWLQDVLPVLEKEYKLCEALINGNNSVIEKDDPNAKDRAMYAPFILKISPDKAI 473
Query: 261 VIVMHKMMGLVMAGHEDRCVQVVQAAVHIGMAIEQEIRIHSFLEK-TKNYKRKKIIADTE 319
+I + ++ L G R + +A +G AIE E RI +K K + +K + +
Sbjct: 474 IITILELFKLHSTGGVVRGFRAYKAIQSVGKAIEAEYRIGLQAKKENKLFSQKHLSPQLQ 533
Query: 320 EVLSK 324
+++ +
Sbjct: 534 KLMRR 538
Score = 37 (18.1 bits), Expect = 3.5e-105, Sum P(2) = 3.5e-105
Identities = 19/122 (15%), Positives = 51/122 (41%)
Query: 164 LQEYREMKKRKFNLLRRRQVKQETEAWERMVDEYKELEAKMIEKRLAPNLPHIKGLFLG- 222
L+ Y K + L K + + E++V Y + + AP + ++K +
Sbjct: 68 LKNYHNNKITYRSYLNLNPEKYDLDEEEKIVKYYSSKNDGVEVQPYAPEIQYLKNILESF 127
Query: 223 ----WFGPLSEAIEREQKMQRTKKQKAAYAPHIE-LLPADKVAVIVMHKMMGLVMAGHED 277
+F + + ++ K+ + ++E +L D +++ ++ ++G + +D
Sbjct: 128 SEQKYFDKIDQVLKSLSKLVNATEFTDICNKYLENILQDDSLSLQDLNSIIGQL----QD 183
Query: 278 RC 279
+C
Sbjct: 184 KC 185
>RGD|1304599 [details] [associations]
symbol:Polrmt "polymerase (RNA) mitochondrial (DNA directed)"
species:10116 "Rattus norvegicus" [GO:0003677 "DNA binding"
evidence=IEA] [GO:0003899 "DNA-directed RNA polymerase activity"
evidence=IEA;ISO] [GO:0005739 "mitochondrion" evidence=ISO]
[GO:0006351 "transcription, DNA-dependent" evidence=IEA]
[GO:0006390 "transcription from mitochondrial promoter"
evidence=ISO] [GO:0042645 "mitochondrial nucleoid" evidence=ISO]
InterPro:IPR002092 InterPro:IPR024075 Pfam:PF00940 PROSITE:PS00489
PROSITE:PS00900 RGD:1304599 GO:GO:0003677 GO:GO:0006351
GO:GO:0042645 GO:GO:0003899 Gene3D:1.10.287.260 PANTHER:PTHR10102
GeneTree:ENSGT00390000008060 OrthoDB:EOG4CZBF9 IPI:IPI00366179
Ensembl:ENSRNOT00000039232 UCSC:RGD:1304599 Uniprot:D3ZYB6
Length = 1205
Score = 1035 (369.4 bits), Expect = 3.9e-108, Sum P(2) = 3.9e-108
Identities = 238/610 (39%), Positives = 351/610 (57%)
Query: 349 LKNEETKPWGRDTQAKLGSRLVELLIETAYVQHPVN-PADYSPPDVRPAFRHRFKTILKH 407
L+ +PW +LG +L ELL++ VQ P + A + + P H +
Sbjct: 528 LETPAQQPWSVPVLLQLGKQLAELLVQA--VQMPRSLAARHGAQNFIPVLYHVYSF---- 581
Query: 408 PGQKTTKRYGVVECDPLVLEGLDRSAKHMLI---PYVPMLVPPKKWKGYNKGGYLFLPSY 464
++ ++ G+++ P L+ +A+ L VPML PP W + G YL +
Sbjct: 582 ---RSYRQVGILKPHPAFTHLLETAAEPTLTFETTEVPMLCPPLPWTSLHSGAYLLSSTK 638
Query: 465 VMR-THGSRKQQEALKSVTGNCMKKVFEALDTLGSTKWRVNKQVLSVLESIWVSGGNIA- 522
+MR T G+ + Q L+ + +AL LG+ WRVN ++L ++ I+ G +
Sbjct: 639 IMRATEGTTQHQRLLERCPPAQLHGALDALTQLGNCAWRVNGRLLDLVLQIFRDKGCMRL 698
Query: 523 GLVD-RNDVLIPEK-PLSEDMTEVQKWKWSVRKAK--KINQERHSQRCDTELKLSVARRM 578
G+ R++ P K L T V K + A+ K +E HS R + +LS+A+ +
Sbjct: 699 GVPPPRSEAPRPAKHQLPPGSTPVHKSELRKELARCLKAAREMHSLRSEALYRLSLAQHL 758
Query: 579 KDEEGFYYPHNLDFRGRAYPMHPHLNHLSSDVCRGVLEFAEGRPLGKSGLRWLKIHLANL 638
+D F+ PHN+DFRGR YP PH NHL SD+ R +LEFAEGRPLG GL WLKIHL NL
Sbjct: 759 RDRV-FWLPHNMDFRGRTYPCPPHFNHLGSDLARALLEFAEGRPLGPRGLDWLKIHLINL 817
Query: 639 FSGGVEKLSHDGRLAFVENHLYEIFDSAENPINGSRWWLTAEDPFQCLAACINLSEALKS 698
+G ++ S RLAF + + EI DSA+NP+ G +WW+ A++P+Q LA C+ +++A++S
Sbjct: 818 -TGLRKRDSLRMRLAFADEVMGEILDSADNPLTGQKWWMKADEPWQTLACCMEVAQAVRS 876
Query: 699 SSPHSVISHLPIHQDGSCNGLQHYAALGRNTLEAAAVNLVAGEKPADVYSEIAVRVHEIM 758
P + +SHLP+HQDGSCNGLQHYAALGR+++ AA+VNL + P DVY E+A +V E+
Sbjct: 877 PDPTAYVSHLPVHQDGSCNGLQHYAALGRDSVGAASVNLTPSDLPQDVYREVATQVEELR 936
Query: 759 KRDSNKDPSKHPQALLAKILIDQVDRKLVKQTVMTSVYGVTFVGAREQIKRRLEEKGHIT 818
++D+ K+ + QAL V RK+VKQTVMT VYGVT G R QI++RL E ++
Sbjct: 937 QQDA-KEGLQVAQALEGF-----VSRKVVKQTVMTVVYGVTRYGGRLQIEKRLRE---LS 987
Query: 819 DDRQLFA--AACYAAKVTLTALGEIFEAARSIMGWLGDCAKVIASENQPVRWTTPLGLPV 876
D Q F A+ Y + +L E+F + R+I WL + A +I+ PV W TPLG+P+
Sbjct: 988 DFPQEFVWEASHYLVRQVFKSLQEMFSSTRAIQRWLTESANLISHAGWPVEWVTPLGIPI 1047
Query: 877 VQPYCKNERHLIRTSLQVLALQR---EGNLVKIRKQRTAFPPNFVHSLDGSHMMMTAVAC 933
+QPY + + ++ LQ + + KQ+ FPPNF+HSLD SHMM+TA+ C
Sbjct: 1048 IQPYHRESKIQVKGGLQSITFTSSVDDSQKPNTLKQKNGFPPNFIHSLDSSHMMLTALHC 1107
Query: 934 RDAGLHFAGL 943
GL F +
Sbjct: 1108 YRKGLTFVSV 1117
Score = 54 (24.1 bits), Expect = 3.9e-108, Sum P(2) = 3.9e-108
Identities = 16/42 (38%), Positives = 25/42 (59%)
Query: 337 IKSKRVMEAQKLLKNEETKPWG-------RDTQAKLGSRLVE 371
+ +K V+EA+K LK +K W R+T+AK+GS+ E
Sbjct: 392 VMTKEVIEARKTLKALRSK-WEVELLRVLRETKAKMGSQAYE 432
>ZFIN|ZDB-GENE-050208-458 [details] [associations]
symbol:si:dkey-21e2.1 "si:dkey-21e2.1" species:7955
"Danio rerio" [GO:0003899 "DNA-directed RNA polymerase activity"
evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA] [GO:0006351
"transcription, DNA-dependent" evidence=IEA] [GO:0016779
"nucleotidyltransferase activity" evidence=IEA] [GO:0016740
"transferase activity" evidence=IEA] InterPro:IPR002092
InterPro:IPR024075 Pfam:PF00940 PROSITE:PS00489 PROSITE:PS00900
InterPro:IPR002885 ZFIN:ZDB-GENE-050208-458 GO:GO:0003677
GO:GO:0006351 PROSITE:PS51375 TIGRFAMs:TIGR00756 GO:GO:0003899
Gene3D:1.10.287.260 PANTHER:PTHR10102 GeneTree:ENSGT00390000008060
EMBL:BX284682 EMBL:BX927243 IPI:IPI00610004
Ensembl:ENSDART00000088169 Uniprot:F1Q5F7
Length = 1281
Score = 1065 (380.0 bits), Expect = 1.0e-107, P = 1.0e-107
Identities = 261/761 (34%), Positives = 409/761 (53%)
Query: 207 KRLAPNLPHIKGLFLG----WFGPLSEAIEREQKMQRTKKQKA---AYAPHIELLPADKV 259
K + N+ H++ L W L +A++ ++M QK+ P++ +L +
Sbjct: 459 KPVTENMAHMRELLAKQRKHWEKALLQALKDRKQMMSNNSQKSWNTCLYPYLCILDDQEY 518
Query: 260 AVIVMHKMMGLVMAGHEDRCVQVVQAAVHIGMAIEQEIRIHSFLEKTKNYKRKKIIADTE 319
I++ + L G ++ A +G + I + K + I +
Sbjct: 519 VDIMLQSLDKLSPNGES-----LLFMADEMGNRVYNLYCIRQKSQSQMVEKLRSIYSSYA 573
Query: 320 EVLSKEKE---LLRKRVNSLIKSKRVMEAQKLLKNEETKPWGRDTQAKLGSRLVELLIET 376
E+L+ + E +L + + ++ LL +++T PW +LGS LV+L++
Sbjct: 574 ELLANDTETNGMLPRECWTNLEISGNRSGPSLL-SDDT-PWPMILMVQLGSFLVDLMVHE 631
Query: 377 AYVQHPVNPADYSPPDVRPAFRHRFKTILKHPGQ-KTTKRYGVVECDPLVLEGLDRSAKH 435
+Q + + PA + IL H ++ + G ++ P++ L + +
Sbjct: 632 LKIQSNI---------LNPALEKKLIPILYHMYTFRSNHKIGFIKPHPILTRILREATET 682
Query: 436 MLI--PYV-PMLVPPKKWKGYNKGGYLFLPSYVMR-THGSRKQQEALKSVTGNCMKKVFE 491
L YV PML PP W G YL P+ +MR + G+ + Q L+ + V +
Sbjct: 683 KLTFDSYVMPMLCPPVPWTSPKSGAYLLTPAKLMRASDGAMQHQLLLEKTQEEDLHAVLD 742
Query: 492 ALDTLGSTKWRVNKQVLSVLESIWVSGGNIAGLVDRNDVLIPE----KPLSEDMTEVQK- 546
+L+ +GS W++NK +L ++ SI+ G+ + PE P T+V+K
Sbjct: 743 SLNQVGSCPWKINKPLLDIIISIFNDKGSDKLSIPPPLSEAPEIPRFNPHDPSYTQVEKA 802
Query: 547 -WKWSVRKAKKINQERHSQRCDTELKLSVARRMKDEEGFYYPHNLDFRGRAYPMHPHLNH 605
K KAKK+ E HS R D KLS+A ++D+ F++PHN+DFRGR YP+ P+ NH
Sbjct: 803 FMKREGIKAKKVVAEMHSLRMDALYKLSIANHVRDKI-FWFPHNMDFRGRTYPLPPYFNH 861
Query: 606 LSSDVCRGVLEFAEGRPLGKSGLRWLKIHLANLFSGGVEKLSHDGRLAFVENHLYEIFDS 665
L SDV R +L FAEGRPLG GL WLKIHL NL +G ++ S DGRL + E+ + +I DS
Sbjct: 862 LGSDVTRALLLFAEGRPLGPKGLDWLKIHLVNL-TGLKKQSSLDGRLEYAESIMEDILDS 920
Query: 666 AENPINGSRWWLTAEDPFQCLAACINLSEALKSSSPHSVISHLPIHQDGSCNGLQHYAAL 725
A++P++G +WW+ A++P+Q LA C+ ++ A +S H IS+ P+HQDGSCNGLQHYAAL
Sbjct: 921 ADHPLDGRKWWMNADEPWQALACCMEIANASRSPDHHKFISYFPVHQDGSCNGLQHYAAL 980
Query: 726 GRNTLEAAAVNLVAGEKPADVYSEIAVRVHEIMKRDSNKDPSKHPQALLAKILIDQVDRK 785
GR+ + A +VNL+ P DVYS +A +V E RD+ + +A++L + RK
Sbjct: 981 GRDVIGATSVNLMPCALPQDVYSGVAKQVEEFRVRDAERGLK------IAQVLQGFISRK 1034
Query: 786 LVKQTVMTSVYGVTFVGAREQIKRRLEEKGHITDDRQLFAAACYAAKVTLTALGEIFEAA 845
+VKQTVMT VYGVT G R QI++RL+E D ++ A+ Y +L E+F
Sbjct: 1035 VVKQTVMTVVYGVTRYGGRLQIEKRLKEIDDFPKD-YVWDASHYLVVQVFNSLKEMFTGT 1093
Query: 846 RSIMGWLGDCAKVIASENQPVRWTTPLGLPVVQPYCKNERHLIRTSLQVLALQ--REGN- 902
R I WL + A++IA + V W TPLGLP++QPY + +++ ++Q L + + N
Sbjct: 1094 REIQEWLTESARLIAKSGRTVEWVTPLGLPIIQPYHRIRNQILKGNIQNLNIHISHDANE 1153
Query: 903 LVKIRKQRTAFPPNFVHSLDGSHMMMTAVACRDAGLHFAGL 943
KQ+ AFPPNF+HSLD +HMM+T++ C AGL F +
Sbjct: 1154 KPDSMKQKNAFPPNFIHSLDSTHMMLTSLHCHRAGLTFVSV 1194
>UNIPROTKB|F1PCF7 [details] [associations]
symbol:POLRMT "DNA-directed RNA polymerase" species:9615
"Canis lupus familiaris" [GO:0003899 "DNA-directed RNA polymerase
activity" evidence=IEA] [GO:0006351 "transcription, DNA-dependent"
evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA]
InterPro:IPR002092 InterPro:IPR024075 Pfam:PF00940 PROSITE:PS00489
PROSITE:PS00900 InterPro:IPR002885 GO:GO:0003677 GO:GO:0006351
PROSITE:PS51375 GO:GO:0003899 Gene3D:1.10.287.260 PANTHER:PTHR10102
GeneTree:ENSGT00390000008060 EMBL:AAEX03012675 EMBL:AAEX03012674
Ensembl:ENSCAFT00000031345 Uniprot:F1PCF7
Length = 1221
Score = 1042 (371.9 bits), Expect = 2.8e-105, P = 2.8e-105
Identities = 231/602 (38%), Positives = 342/602 (56%)
Query: 355 KPWGRDTQAKLGSRLVELLIETAYVQHPVNPADYSPPDVRPAFRHRFKTILKHPGQKTTK 414
+PW +LG RL ELL+ET + + A + P H + ++ +
Sbjct: 552 QPWPLPVLVELGKRLAELLVETVRIPGSL-AAPQGACTLIPVLYHVYSF-------RSFR 603
Query: 415 RYGVVECDPLVLEGLDRSAKHMLI---PYVPMLVPPKKWKGYNKGGYLFLPSYVMRT-HG 470
+ G+++ P E L +A+H LI VPML PP W + G +L P+ +MR+ G
Sbjct: 604 QIGILKPHPAFTELLAAAAEHTLIFEAAEVPMLCPPLPWTSPHTGAFLLSPTKLMRSLEG 663
Query: 471 SRKQQEALKSVTGNCMKKVFEALDTLGSTKWRVNKQVLS-VLESIWVSGGNIAGL-VDRN 528
+ + Q L S + +AL LG+ WRVN +VL VLE G G+ +
Sbjct: 664 TMQHQRLLDSCPPAELHGALDALTQLGNCAWRVNGRVLDLVLELFAAKGCPRLGVPAPPS 723
Query: 529 DV-LIPEKPLSEDMTEVQKW--KWSVRKAKKINQERHSQRCDTELKLSVARRMKDEEGFY 585
+ PE L D + QK + + + K+ +E HS R D +LS+A+ ++ F+
Sbjct: 724 EAPRPPEGRLPPDASPAQKAEVRRELARCLKVAREMHSLRSDALYRLSLAQHLRHRV-FW 782
Query: 586 YPHNLDFRGRAYPMHPHLNHLSSDVCRGVLEFAEGRPLGKSGLRWLKIHLANLFSGGVEK 645
PHN+DFRGR YP PH NHL SD+ R +LEFA+GRPLG GL WLKIHL NL G++K
Sbjct: 783 LPHNMDFRGRTYPCPPHFNHLGSDLARALLEFAQGRPLGPHGLDWLKIHLVNLT--GLKK 840
Query: 646 LSH-DGRLAFVENHLYEIFDSAENPINGSRWWLTAEDPFQCLAACINLSEALKSSSPHSV 704
RL F + + +I DSA+ P+ G +WW+ ++P+Q LA C+ ++ A++S P +
Sbjct: 841 HEPLQARLVFADEVMDDILDSADRPMTGRKWWMEVDEPWQALACCMEIARAVRSPDPTAF 900
Query: 705 ISHLPIHQDGSCNGLQHYAALGRNTLEAAAVNLVAGEKPADVYSEIAVRVHEIMKRDSNK 764
+SH P+HQDGSCNGLQHYAALGR+++ AA+VNL+ + P DVYS +A +V ++D+ +
Sbjct: 901 VSHFPVHQDGSCNGLQHYAALGRDSIGAASVNLLPSDFPQDVYSGVAAQVEVFRRQDAQR 960
Query: 765 DPSKHPQALLAKILIDQVDRKLVKQTVMTSVYGVTFVGAREQIKRRLEEKGHITDDRQLF 824
+A++L + RK+VKQTVMT VYGVT G R QI+RRL E + + ++
Sbjct: 961 G------VRVAQVLEGFISRKVVKQTVMTVVYGVTRYGGRLQIERRLRELSNFPQEF-VW 1013
Query: 825 AAACYAAKVTLTALGEIFEAARSIMGWLGDCAKVIASENQPVRWTTPLGLPVVQPYCKNE 884
A+ Y + +L E+F R+I WL + A++IA V W TPLG+P++QPY ++
Sbjct: 1014 EASHYLVRQVFNSLQEMFSGTRAIQHWLTESARLIAQTGSAVEWVTPLGIPIIQPYHRDS 1073
Query: 885 RHLIRTSLQVLALQREGNLVK---IRKQRTAFPPNFVHSLDGSHMMMTAVACRDAGLHFA 941
+ +I +Q L G+ + KQ+ FPPNF+HSLD SHMM+TA+ C GL F
Sbjct: 1074 KVMIGGGIQSLTFSNSGDTTQKPNTLKQKNGFPPNFIHSLDSSHMMLTALHCYRKGLTFV 1133
Query: 942 GL 943
+
Sbjct: 1134 SV 1135
>UNIPROTKB|J9P8Y8 [details] [associations]
symbol:POLRMT "DNA-directed RNA polymerase" species:9615
"Canis lupus familiaris" [GO:0003899 "DNA-directed RNA polymerase
activity" evidence=IEA] [GO:0035556 "intracellular signal
transduction" evidence=IEA] [GO:0006351 "transcription,
DNA-dependent" evidence=IEA] [GO:0003677 "DNA binding"
evidence=IEA] InterPro:IPR002092 InterPro:IPR006019
InterPro:IPR006020 InterPro:IPR024075 Pfam:PF00640 Pfam:PF00940
PRINTS:PR00629 PROSITE:PS00489 PROSITE:PS00900 PROSITE:PS01179
SMART:SM00462 InterPro:IPR002885 Gene3D:2.30.29.30
InterPro:IPR011993 GO:GO:0035556 GO:GO:0003677 GO:GO:0006351
GO:GO:0005622 PROSITE:PS51375 GO:GO:0003899 Gene3D:1.10.287.260
PANTHER:PTHR10102 GeneTree:ENSGT00390000008060 EMBL:AAEX03012675
EMBL:AAEX03012674 Ensembl:ENSCAFT00000046349 Uniprot:J9P8Y8
Length = 1414
Score = 1042 (371.9 bits), Expect = 2.8e-105, P = 2.8e-105
Identities = 231/602 (38%), Positives = 342/602 (56%)
Query: 355 KPWGRDTQAKLGSRLVELLIETAYVQHPVNPADYSPPDVRPAFRHRFKTILKHPGQKTTK 414
+PW +LG RL ELL+ET + + A + P H + ++ +
Sbjct: 552 QPWPLPVLVELGKRLAELLVETVRIPGSL-AAPQGACTLIPVLYHVYSF-------RSFR 603
Query: 415 RYGVVECDPLVLEGLDRSAKHMLI---PYVPMLVPPKKWKGYNKGGYLFLPSYVMRT-HG 470
+ G+++ P E L +A+H LI VPML PP W + G +L P+ +MR+ G
Sbjct: 604 QIGILKPHPAFTELLAAAAEHTLIFEAAEVPMLCPPLPWTSPHTGAFLLSPTKLMRSLEG 663
Query: 471 SRKQQEALKSVTGNCMKKVFEALDTLGSTKWRVNKQVLS-VLESIWVSGGNIAGL-VDRN 528
+ + Q L S + +AL LG+ WRVN +VL VLE G G+ +
Sbjct: 664 TMQHQRLLDSCPPAELHGALDALTQLGNCAWRVNGRVLDLVLELFAAKGCPRLGVPAPPS 723
Query: 529 DV-LIPEKPLSEDMTEVQKW--KWSVRKAKKINQERHSQRCDTELKLSVARRMKDEEGFY 585
+ PE L D + QK + + + K+ +E HS R D +LS+A+ ++ F+
Sbjct: 724 EAPRPPEGRLPPDASPAQKAEVRRELARCLKVAREMHSLRSDALYRLSLAQHLRHRV-FW 782
Query: 586 YPHNLDFRGRAYPMHPHLNHLSSDVCRGVLEFAEGRPLGKSGLRWLKIHLANLFSGGVEK 645
PHN+DFRGR YP PH NHL SD+ R +LEFA+GRPLG GL WLKIHL NL G++K
Sbjct: 783 LPHNMDFRGRTYPCPPHFNHLGSDLARALLEFAQGRPLGPHGLDWLKIHLVNLT--GLKK 840
Query: 646 LSH-DGRLAFVENHLYEIFDSAENPINGSRWWLTAEDPFQCLAACINLSEALKSSSPHSV 704
RL F + + +I DSA+ P+ G +WW+ ++P+Q LA C+ ++ A++S P +
Sbjct: 841 HEPLQARLVFADEVMDDILDSADRPMTGRKWWMEVDEPWQALACCMEIARAVRSPDPTAF 900
Query: 705 ISHLPIHQDGSCNGLQHYAALGRNTLEAAAVNLVAGEKPADVYSEIAVRVHEIMKRDSNK 764
+SH P+HQDGSCNGLQHYAALGR+++ AA+VNL+ + P DVYS +A +V ++D+ +
Sbjct: 901 VSHFPVHQDGSCNGLQHYAALGRDSIGAASVNLLPSDFPQDVYSGVAAQVEVFRRQDAQR 960
Query: 765 DPSKHPQALLAKILIDQVDRKLVKQTVMTSVYGVTFVGAREQIKRRLEEKGHITDDRQLF 824
+A++L + RK+VKQTVMT VYGVT G R QI+RRL E + + ++
Sbjct: 961 G------VRVAQVLEGFISRKVVKQTVMTVVYGVTRYGGRLQIERRLRELSNFPQEF-VW 1013
Query: 825 AAACYAAKVTLTALGEIFEAARSIMGWLGDCAKVIASENQPVRWTTPLGLPVVQPYCKNE 884
A+ Y + +L E+F R+I WL + A++IA V W TPLG+P++QPY ++
Sbjct: 1014 EASHYLVRQVFNSLQEMFSGTRAIQHWLTESARLIAQTGSAVEWVTPLGIPIIQPYHRDS 1073
Query: 885 RHLIRTSLQVLALQREGNLVK---IRKQRTAFPPNFVHSLDGSHMMMTAVACRDAGLHFA 941
+ +I +Q L G+ + KQ+ FPPNF+HSLD SHMM+TA+ C GL F
Sbjct: 1074 KVMIGGGIQSLTFSNSGDTTQKPNTLKQKNGFPPNFIHSLDSSHMMLTALHCYRKGLTFV 1133
Query: 942 GL 943
+
Sbjct: 1134 SV 1135
>MGI|MGI:1915843 [details] [associations]
symbol:Polrmt "polymerase (RNA) mitochondrial (DNA
directed)" species:10090 "Mus musculus" [GO:0003677 "DNA binding"
evidence=IEA] [GO:0003899 "DNA-directed RNA polymerase activity"
evidence=ISO] [GO:0005739 "mitochondrion" evidence=ISO;IDA]
[GO:0006351 "transcription, DNA-dependent" evidence=IEA]
[GO:0006390 "transcription from mitochondrial promoter"
evidence=ISO] [GO:0016740 "transferase activity" evidence=IEA]
[GO:0016779 "nucleotidyltransferase activity" evidence=IEA]
[GO:0042645 "mitochondrial nucleoid" evidence=ISO]
InterPro:IPR002092 InterPro:IPR024075 Pfam:PF00940 PROSITE:PS00489
PROSITE:PS00900 InterPro:IPR002885 MGI:MGI:1915843 GO:GO:0005739
GO:GO:0003677 GO:GO:0006351 GO:GO:0042645 PROSITE:PS51375
TIGRFAMs:TIGR00756 GO:GO:0003899 CTD:5442 eggNOG:COG5108
HOGENOM:HOG000044061 HOVERGEN:HBG078730 KO:K10908 OMA:WARKGSF
Gene3D:1.10.287.260 PANTHER:PTHR10102 EMBL:AK053356 EMBL:AK085666
IPI:IPI00308717 RefSeq:NP_766139.2 UniGene:Mm.39001
ProteinModelPortal:Q8BKF1 SMR:Q8BKF1 STRING:Q8BKF1
PhosphoSite:Q8BKF1 PaxDb:Q8BKF1 PRIDE:Q8BKF1
Ensembl:ENSMUST00000020580 GeneID:216151 KEGG:mmu:216151
GeneTree:ENSGT00390000008060 InParanoid:Q8BKF1 OrthoDB:EOG4CZBF9
NextBio:375012 Bgee:Q8BKF1 CleanEx:MM_POLRMT Genevestigator:Q8BKF1
GermOnline:ENSMUSG00000020329 Uniprot:Q8BKF1
Length = 1207
Score = 1020 (364.1 bits), Expect = 7.3e-105, Sum P(2) = 7.3e-105
Identities = 236/604 (39%), Positives = 347/604 (57%)
Query: 355 KPWGRDTQAKLGSRLVELLIETAYVQHPVNPADYSPPDVRPAFRHRFKTILKHPGQKTTK 414
+PW +LG +L ELL++ VQ P + A R + + ++ +
Sbjct: 536 QPWSVPVLLQLGKQLAELLVQA--VQMPRSLA------ARQGAQRSIPVLYHVYSFRSYR 587
Query: 415 RYGVVECDPLVLEGLDRSAKHMLI---PYVPMLVPPKKWKGYNKGGYLFLPSYVMR-THG 470
+ G+++ P L+ +A+ L VPML PP W + G YL + +MR T G
Sbjct: 588 QVGILKPHPAFTHLLETAAEPTLTFETTEVPMLCPPLPWTSLHSGAYLLSSTKLMRATEG 647
Query: 471 SRKQQEALKSVTGNCMKKVFEALDTLGSTKWRVNKQVLSVLESIWVSGGNIA-GLVD-RN 528
+ + Q L+ + +AL LG+ WRVN +L ++ I+ G + G+ R+
Sbjct: 648 TTQHQRLLEQCPPAQLHGPLDALTQLGNCAWRVNGHLLDLVLQIFRDKGCMPLGVPPPRS 707
Query: 529 DVLIPEK-PLSEDMTEVQKWKWSVRKAK--KINQERHSQRCDTELKLSVARRMKDEEGFY 585
+ P + L T V K + A+ K+ +E HS R + +LS+A+ ++ F+
Sbjct: 708 EAPRPARYQLPPGSTPVHKSELRKELARCLKVAREMHSLRSEALYRLSLAQHLRHRV-FW 766
Query: 586 YPHNLDFRGRAYPMHPHLNHLSSDVCRGVLEFAEGRPLGKSGLRWLKIHLANLFSGGVEK 645
PHN+DFRGR YP PH NHL SD+ R +LEFAEGRPLG GL WLKIHL NL G++K
Sbjct: 767 LPHNMDFRGRTYPCPPHFNHLGSDLARALLEFAEGRPLGPRGLDWLKIHLINLT--GLKK 824
Query: 646 L-SHDGRLAFVENHLYEIFDSAENPINGSRWWLTAEDPFQCLAACINLSEALKSSSPHSV 704
S RLAF + + EI DSA+NP+ G +WW+ A++P+Q LA C+ ++ A++S P +
Sbjct: 825 GDSLRMRLAFADEVMEEILDSADNPLTGRKWWMEADEPWQTLACCMEVAHAVRSPDPAAY 884
Query: 705 ISHLPIHQDGSCNGLQHYAALGRNTLEAAAVNLVAGEKPADVYSEIAVRVHEIMKRDSNK 764
ISHLP+HQDGSCNGLQHYAALGR+++ AA+VNL + P DVY E+A +V E ++D+ K
Sbjct: 885 ISHLPVHQDGSCNGLQHYAALGRDSVGAASVNLTPSDLPQDVYREVATQVEEFRQQDA-K 943
Query: 765 DPSKHPQALLAKILIDQVDRKLVKQTVMTSVYGVTFVGAREQIKRRLEEKGHITDDRQLF 824
+ + +A++L + RK+VKQTVMT VYGVT G R QI++RL E ++D Q F
Sbjct: 944 EGLR-----VAQVLEGFISRKVVKQTVMTVVYGVTRYGGRLQIEKRLRE---LSDFPQEF 995
Query: 825 A--AACYAAKVTLTALGEIFEAARSIMGWLGDCAKVIASENQPVRWTTPLGLPVVQPYCK 882
A+ Y + +L E+F + R+I WL + A +I+ PV W TPLG+P++QPY +
Sbjct: 996 VWEASHYLVRQVFKSLQEMFTSTRAIQHWLTESANLISHAGWPVEWVTPLGIPIIQPYHR 1055
Query: 883 NERHLIRTSLQVLALQR---EGNLVKIRKQRTAFPPNFVHSLDGSHMMMTAVACRDAGLH 939
+ ++ LQ + L E KQ+ FPPNF+HSLD SHMM+TA+ C GL
Sbjct: 1056 ESKVQVKGGLQSITLTSSVDESQKPNTLKQKNGFPPNFIHSLDSSHMMLTALHCYRKGLI 1115
Query: 940 FAGL 943
F +
Sbjct: 1116 FVSV 1119
Score = 38 (18.4 bits), Expect = 7.3e-105, Sum P(2) = 7.3e-105
Identities = 8/38 (21%), Positives = 19/38 (50%)
Query: 322 LSKEKELLRKRVNSLIKSKRVMEAQKLLKNEETKPWGR 359
L EK + ++R + + K+ + + ++E K W +
Sbjct: 101 LEAEKRVKQRRQKEVDQQKQALTQEFWTLHKEPKIWNK 138
>UNIPROTKB|K7EKS3 [details] [associations]
symbol:POLRMT "DNA-directed RNA polymerase" species:9606
"Homo sapiens" [GO:0003677 "DNA binding" evidence=IEA] [GO:0006351
"transcription, DNA-dependent" evidence=IEA] [GO:0003899
"DNA-directed RNA polymerase activity" evidence=IEA]
InterPro:IPR002092 InterPro:IPR024075 Pfam:PF00940 PROSITE:PS00489
PROSITE:PS00900 EMBL:CH471242 EMBL:AC004449 HGNC:HGNC:9200
Gene3D:1.10.287.260 PANTHER:PTHR10102 Ensembl:ENST00000588649
Uniprot:K7EKS3
Length = 1245
Score = 1038 (370.5 bits), Expect = 7.5e-105, P = 7.5e-105
Identities = 274/818 (33%), Positives = 432/818 (52%)
Query: 147 PPWFSSIFLKGLYKRIKLQEYREMKK--RKFNLLRRRQVKQETEAWERMVD-EYKELEAK 203
PP +S L+ +Y + Y ++ + L +Q+ E + +V E L +K
Sbjct: 381 PPVNTSKLLRDVYAKDGRVSYPKLHLPLKTLQCLFEKQLHMELASRVCVVSVEKPTLPSK 440
Query: 204 MIEKRLAPNLPHIKGLFLGWFGPLSEAI-EREQKMQRTKKQ-KAAYAPHIELLPADKVAV 261
+ K L ++ W L A+ E + +++R + + + P + LL +V
Sbjct: 441 EV-KHARKTLKTLRDQ---WEKALCRALRETKNRLEREVYEGRFSLYPFLCLLDEREVVR 496
Query: 262 IVMHKMMGLVMAGHEDRCVQVVQAAVHIGMAIEQEIRIHSFLEKTKNYKRKKIIADTEEV 321
+++ + L G + +A + Q R+ ++ +N+ RK + +
Sbjct: 497 MLLQVLQALPAQGESFTTLARELSARTFSRHVVQRQRVSGQVQALQNHYRKYLCLLASDA 556
Query: 322 LSKEKELLRKRVNSLIKSKRVMEAQKLLKNEETKPWGRDTQAKLGSRLVELLIETAYVQH 381
E L R+ L A + L+ + PW Q +LG L E+L++ Q
Sbjct: 557 EVPEPCLPRQYWEEL-------GAPEALREQ---PWPLPVQMELGKLLAEMLVQAT--QM 604
Query: 382 PVNPADYSPPDVRPAFRHRFKTILKHPGQ-KTTKRYGVVECDPLVLEGLDRSAKHMLI-- 438
P + D +P R +L H + ++ G+++ P ++ L+++A+ L
Sbjct: 605 PCS-LD------KPHRSSRLVPVLYHVYSFRNVQQIGILKPHPAYVQLLEKAAEPTLTFE 657
Query: 439 -PYVPMLVPPKKWKGYNKGGYLFLPSYVMRT-HGSRKQQEALKSVTGNCMKKVFEALDTL 496
VPML PP W + G +L P+ +MRT G+ + QE L++ + +AL L
Sbjct: 658 AVDVPMLCPPLPWTSPHSGAFLLSPTKLMRTVEGATQHQELLETCPPTALHGALDALTQL 717
Query: 497 GSTKWRVNKQVLS-VLESIWVSGGNIAGL-VDRNDV-LIPEKPLSEDMTEVQK--WKWSV 551
G+ WRVN +VL VL+ G G+ ++ PE L +K + +
Sbjct: 718 GNCAWRVNGRVLDLVLQLFQAKGCPQLGVPAPPSEAPQPPEAHLPHSAAPARKAELRREL 777
Query: 552 RKAKKINQERHSQRCDTELKLSVARRMKDEEGFYYPHNLDFRGRAYPMHPHLNHLSSDVC 611
+K+ +E HS R + +LS+A+ ++D F+ PHN+DFRGR YP PH NHL SDV
Sbjct: 778 AHCQKVAREMHSLRAEALYRLSLAQHLRDRV-FWLPHNMDFRGRTYPCPPHFNHLGSDVA 836
Query: 612 RGVLEFAEGRPLGKSGLRWLKIHLANLFSGGVEKLSHDGRLAFVENHLYEIFDSAENPIN 671
R +LEFA+GRPLG GL WLKIHL NL +G ++ RLAF E + +I DSA+ P+
Sbjct: 837 RALLEFAQGRPLGPHGLDWLKIHLVNL-TGLKKREPLRKRLAFAEEVMDDILDSADQPLT 895
Query: 672 GSRWWLTAEDPFQCLAACINLSEALKSSSPHSVISHLPIHQDGSCNGLQHYAALGRNTLE 731
G +WW+ AE+P+Q LA C+ ++ A+++S P + +SHLP+HQDGSCNGLQHYAALGR+++
Sbjct: 896 GRKWWMGAEEPWQTLACCMEVANAVRASDPAAYVSHLPVHQDGSCNGLQHYAALGRDSVG 955
Query: 732 AAAVNLVAGEKPADVYSEIAVRVHEIMKRDSNKDPSKHPQALLAKILIDQVDRKLVKQTV 791
AA+VNL + P DVYS +A +V E+ +R +D + + +A++L + RK+VKQTV
Sbjct: 956 AASVNLEPSDVPQDVYSGVAAQV-EVFRR---QDAQRGMR--VAQVLEGFITRKVVKQTV 1009
Query: 792 MTSVYGVTFVGAREQIKRRLEEKGHITDDRQLFA--AACYAAKVTLTALGEIFEAARSIM 849
MT VYGVT G R QI++RL E ++D Q F A+ Y + +L E+F R+I
Sbjct: 1010 MTVVYGVTRYGGRLQIEKRLRE---LSDFPQEFVWEASHYLVRQVFKSLQEMFSGTRAIQ 1066
Query: 850 GWLGDCAKVIASENQPVRWTTPLGLPVVQPYCKNER-HLIRTSLQVLALQREGNLVK--- 905
WL + A++I+ V W TPLG+PV+QPY + + I +Q + G++ +
Sbjct: 1067 HWLTESARLISHMGSVVEWVTPLGVPVIQPYRLDSKVKQIGGGIQSITYTHNGDISRKPN 1126
Query: 906 IRKQRTAFPPNFVHSLDGSHMMMTAVACRDAGLHFAGL 943
RKQ+ FPPNF+HSLD SHMM+TA+ C GL F +
Sbjct: 1127 TRKQKNGFPPNFIHSLDSSHMMLTALHCYRKGLTFVSV 1164
>UNIPROTKB|O00411 [details] [associations]
symbol:POLRMT "DNA-directed RNA polymerase, mitochondrial"
species:9606 "Homo sapiens" [GO:0003677 "DNA binding" evidence=IEA]
[GO:0005515 "protein binding" evidence=IPI] [GO:0003899
"DNA-directed RNA polymerase activity" evidence=IDA;TAS]
[GO:0006390 "transcription from mitochondrial promoter"
evidence=IDA;TAS] [GO:0005739 "mitochondrion" evidence=IDA]
[GO:0005759 "mitochondrial matrix" evidence=TAS] [GO:0006391
"transcription initiation from mitochondrial promoter"
evidence=TAS] [GO:0010467 "gene expression" evidence=TAS]
[GO:0042645 "mitochondrial nucleoid" evidence=IDA]
Reactome:REACT_71 InterPro:IPR002092 InterPro:IPR024075
Pfam:PF00940 PROSITE:PS00489 PROSITE:PS00900 GO:GO:0003677
GO:GO:0042645 Reactome:REACT_1788 GO:GO:0003899 EMBL:AC004449
EMBL:U75370 IPI:IPI00298738 RefSeq:NP_005026.3 UniGene:Hs.254113
PDB:3SPA PDBsum:3SPA ProteinModelPortal:O00411 SMR:O00411
DIP:DIP-56412N IntAct:O00411 MINT:MINT-1142772 STRING:O00411
PhosphoSite:O00411 PaxDb:O00411 PRIDE:O00411
Ensembl:ENST00000215591 GeneID:5442 KEGG:hsa:5442 UCSC:uc002lpf.1
CTD:5442 GeneCards:GC19M000617 H-InvDB:HIX0027511
H-InvDB:HIX0059707 HGNC:HGNC:9200 HPA:HPA006366 MIM:601778
neXtProt:NX_O00411 PharmGKB:PA33522 eggNOG:COG5108
HOGENOM:HOG000044061 HOVERGEN:HBG078730 InParanoid:O00411 KO:K10908
OMA:WARKGSF PhylomeDB:O00411 GenomeRNAi:5442 NextBio:21059
Bgee:O00411 CleanEx:HS_POLRMT Genevestigator:O00411
GermOnline:ENSG00000099821 GO:GO:0006391 Gene3D:1.10.287.260
PANTHER:PTHR10102 Uniprot:O00411
Length = 1230
Score = 1038 (370.5 bits), Expect = 7.5e-105, P = 7.5e-105
Identities = 274/818 (33%), Positives = 432/818 (52%)
Query: 147 PPWFSSIFLKGLYKRIKLQEYREMKK--RKFNLLRRRQVKQETEAWERMVD-EYKELEAK 203
PP +S L+ +Y + Y ++ + L +Q+ E + +V E L +K
Sbjct: 366 PPVNTSKLLRDVYAKDGRVSYPKLHLPLKTLQCLFEKQLHMELASRVCVVSVEKPTLPSK 425
Query: 204 MIEKRLAPNLPHIKGLFLGWFGPLSEAI-EREQKMQRTKKQ-KAAYAPHIELLPADKVAV 261
+ K L ++ W L A+ E + +++R + + + P + LL +V
Sbjct: 426 EV-KHARKTLKTLRDQ---WEKALCRALRETKNRLEREVYEGRFSLYPFLCLLDEREVVR 481
Query: 262 IVMHKMMGLVMAGHEDRCVQVVQAAVHIGMAIEQEIRIHSFLEKTKNYKRKKIIADTEEV 321
+++ + L G + +A + Q R+ ++ +N+ RK + +
Sbjct: 482 MLLQVLQALPAQGESFTTLARELSARTFSRHVVQRQRVSGQVQALQNHYRKYLCLLASDA 541
Query: 322 LSKEKELLRKRVNSLIKSKRVMEAQKLLKNEETKPWGRDTQAKLGSRLVELLIETAYVQH 381
E L R+ L A + L+ + PW Q +LG L E+L++ Q
Sbjct: 542 EVPEPCLPRQYWEEL-------GAPEALREQ---PWPLPVQMELGKLLAEMLVQAT--QM 589
Query: 382 PVNPADYSPPDVRPAFRHRFKTILKHPGQ-KTTKRYGVVECDPLVLEGLDRSAKHMLI-- 438
P + D +P R +L H + ++ G+++ P ++ L+++A+ L
Sbjct: 590 PCS-LD------KPHRSSRLVPVLYHVYSFRNVQQIGILKPHPAYVQLLEKAAEPTLTFE 642
Query: 439 -PYVPMLVPPKKWKGYNKGGYLFLPSYVMRT-HGSRKQQEALKSVTGNCMKKVFEALDTL 496
VPML PP W + G +L P+ +MRT G+ + QE L++ + +AL L
Sbjct: 643 AVDVPMLCPPLPWTSPHSGAFLLSPTKLMRTVEGATQHQELLETCPPTALHGALDALTQL 702
Query: 497 GSTKWRVNKQVLS-VLESIWVSGGNIAGL-VDRNDV-LIPEKPLSEDMTEVQK--WKWSV 551
G+ WRVN +VL VL+ G G+ ++ PE L +K + +
Sbjct: 703 GNCAWRVNGRVLDLVLQLFQAKGCPQLGVPAPPSEAPQPPEAHLPHSAAPARKAELRREL 762
Query: 552 RKAKKINQERHSQRCDTELKLSVARRMKDEEGFYYPHNLDFRGRAYPMHPHLNHLSSDVC 611
+K+ +E HS R + +LS+A+ ++D F+ PHN+DFRGR YP PH NHL SDV
Sbjct: 763 AHCQKVAREMHSLRAEALYRLSLAQHLRDRV-FWLPHNMDFRGRTYPCPPHFNHLGSDVA 821
Query: 612 RGVLEFAEGRPLGKSGLRWLKIHLANLFSGGVEKLSHDGRLAFVENHLYEIFDSAENPIN 671
R +LEFA+GRPLG GL WLKIHL NL +G ++ RLAF E + +I DSA+ P+
Sbjct: 822 RALLEFAQGRPLGPHGLDWLKIHLVNL-TGLKKREPLRKRLAFAEEVMDDILDSADQPLT 880
Query: 672 GSRWWLTAEDPFQCLAACINLSEALKSSSPHSVISHLPIHQDGSCNGLQHYAALGRNTLE 731
G +WW+ AE+P+Q LA C+ ++ A+++S P + +SHLP+HQDGSCNGLQHYAALGR+++
Sbjct: 881 GRKWWMGAEEPWQTLACCMEVANAVRASDPAAYVSHLPVHQDGSCNGLQHYAALGRDSVG 940
Query: 732 AAAVNLVAGEKPADVYSEIAVRVHEIMKRDSNKDPSKHPQALLAKILIDQVDRKLVKQTV 791
AA+VNL + P DVYS +A +V E+ +R +D + + +A++L + RK+VKQTV
Sbjct: 941 AASVNLEPSDVPQDVYSGVAAQV-EVFRR---QDAQRGMR--VAQVLEGFITRKVVKQTV 994
Query: 792 MTSVYGVTFVGAREQIKRRLEEKGHITDDRQLFA--AACYAAKVTLTALGEIFEAARSIM 849
MT VYGVT G R QI++RL E ++D Q F A+ Y + +L E+F R+I
Sbjct: 995 MTVVYGVTRYGGRLQIEKRLRE---LSDFPQEFVWEASHYLVRQVFKSLQEMFSGTRAIQ 1051
Query: 850 GWLGDCAKVIASENQPVRWTTPLGLPVVQPYCKNER-HLIRTSLQVLALQREGNLVK--- 905
WL + A++I+ V W TPLG+PV+QPY + + I +Q + G++ +
Sbjct: 1052 HWLTESARLISHMGSVVEWVTPLGVPVIQPYRLDSKVKQIGGGIQSITYTHNGDISRKPN 1111
Query: 906 IRKQRTAFPPNFVHSLDGSHMMMTAVACRDAGLHFAGL 943
RKQ+ FPPNF+HSLD SHMM+TA+ C GL F +
Sbjct: 1112 TRKQKNGFPPNFIHSLDSSHMMLTALHCYRKGLTFVSV 1149
>UNIPROTKB|E1BZ13 [details] [associations]
symbol:POLRMT "DNA-directed RNA polymerase" species:9031
"Gallus gallus" [GO:0003677 "DNA binding" evidence=IEA] [GO:0006351
"transcription, DNA-dependent" evidence=IEA] [GO:0003899
"DNA-directed RNA polymerase activity" evidence=IEA] [GO:0042645
"mitochondrial nucleoid" evidence=IEA] InterPro:IPR002092
InterPro:IPR024075 Pfam:PF00940 PROSITE:PS00489 PROSITE:PS00900
InterPro:IPR002885 GO:GO:0003677 GO:GO:0006351 GO:GO:0042645
PROSITE:PS51375 GO:GO:0003899 OMA:WARKGSF Gene3D:1.10.287.260
PANTHER:PTHR10102 GeneTree:ENSGT00390000008060 EMBL:AADN02066671
EMBL:AADN02066672 EMBL:AADN02066673 IPI:IPI00572283
Ensembl:ENSGALT00000002098 Uniprot:E1BZ13
Length = 1018
Score = 1025 (365.9 bits), Expect = 1.8e-103, P = 1.8e-103
Identities = 272/820 (33%), Positives = 423/820 (51%)
Query: 147 PPWFSSIFLKGLYKRIKLQEYREMKKRKFNLLRRRQVKQETEAWERMVDEYKELEAKMIE 206
P + LK Y K+ Y ++ L R Q + E E + E E K +
Sbjct: 145 PEICKTALLKNFYSEEKMVSYPKLDFTVQELRERFQQQLEMELNSTITIESVE-STKPLT 203
Query: 207 KRLAPNLPHIKGLFLGWFGPLSEAIEREQ-KMQRTKKQK--AAYAPHIELLPADKVAVIV 263
+ + W G + +A+++ + M + K + P++ LLP ++ I+
Sbjct: 204 PQAIKARQQLASFRSQWRGAILQALQKSKHNMSQVKTMSGHSVLYPYLCLLPDEEYVDIM 263
Query: 264 MHKMMGLVMAGHEDRCVQVVQAAVHIGMAIEQEIRIHSF-LEKTKN-YKRK-KIIADTEE 320
M + L G E V + + + ++HS LEK + YK ++A +
Sbjct: 264 MQILNSLSPQG-ESLAVLARELGSKVYNRYLTQRKLHSGQLEKVQEIYKNYIHLLAKDSQ 322
Query: 321 VLSKEKELLRKRVNSLIKSKRVMEAQKLLKNEETKPWGRDTQAKLGSRLVELLIETAYV- 379
V S +E L + K V E + LK + + W +LG L+E+L+ V
Sbjct: 323 VGSPPREYLPREY----WEKLVAEPE--LKRDCS--WPYVLLMRLGMYLLEILVHAVKVP 374
Query: 380 QHPVNPADYSPPDVRPAFRHRFKTILKHPGQKTTKRYGVVECDPLVLEGLDRSAKHMLI- 438
++ +NP P + P H + +++ + G+++ P+ + + +A+ ML
Sbjct: 375 RNTLNPR--LPSKLIPVLYHIYSF-------RSSWQVGLIKPHPIFSQIVSDAAETMLTF 425
Query: 439 --PYVPMLVPPKKWKGYNKGGYLFLPSYVMR-THGSRKQQEALKSVTGNCMKKVFEALDT 495
+PML PP W + G ++ + +MR G+ + Q+ L + V +AL+
Sbjct: 426 NSSAIPMLCPPVPWTSPHFGAFVLSDTKLMRYVDGAIQHQQLLDQCPQVNLHPVLDALNQ 485
Query: 496 LGSTKWRVNKQVLSVLESIWVSGGNIAGLVDRNDVLIPEKPLSEDMTEV--QKWKWSVRK 553
LG+ W++N+ VL ++ SI+ GN + P+ P+S + + K +
Sbjct: 486 LGNCAWKINQPVLDIIISIFNDKGNEKLDIPPPVSEAPKPPVSPSSSSALHKSQKHELLL 545
Query: 554 AKKINQERHSQRCDTELKLSVARRMKDEEGFYYPHNLDFRGRAYPMHPHLNHLSSDVCRG 613
KK E HS R D KLS+A ++D+ F++PHN+DFRGR YP P+ NHL +DV R
Sbjct: 546 CKKKAAEMHSLRMDALYKLSIANYVRDKV-FWFPHNMDFRGRTYPCPPYFNHLGNDVTRA 604
Query: 614 VLEFAEGRPLGKSGLRWLKIHLANLFSGGVEKLSHDGRLAFVENHLYEIFDSAENPINGS 673
+L FAEGRPLG GL WLKIHL NL +G +K + RL + + EI DSA++P+ G
Sbjct: 605 ILLFAEGRPLGPKGLDWLKIHLINL-TGLKKKNALQERLDYANEIMEEILDSADHPLTGR 663
Query: 674 RWWLTAEDPFQCLAACINLSEALKSSSPHSVISHLPIHQDGSCNGLQHYAALGRNTLEAA 733
+WW+ ++P+Q LA C+ +++A +S P + ISH P+HQDGSCNGLQHYAALGR+ + A
Sbjct: 664 KWWMNTDEPWQVLACCMEIAKASRSPDPAAFISHFPVHQDGSCNGLQHYAALGRDLIGAI 723
Query: 734 AVNLVAGEKPADVYSEIAVRVHEIMKRDSNKDPSKHPQALLAKILIDQVDRKLVKQTVMT 793
+VNL+ P DVYS +A +V E K+D+ + +A++L + RK+VKQTVMT
Sbjct: 724 SVNLMPCNVPQDVYSAVAQQVEEFRKKDAEEG------LRIAQVLEGFIGRKVVKQTVMT 777
Query: 794 SVYGVTFVGAREQIKRRLEEKGHITDDRQLFAAACYAAKVTLTALGEIFEAARSIMGWLG 853
VYGVT G R Q+++RL+E + L+ A+ Y K + E+F A R I WL
Sbjct: 778 VVYGVTRYGGRLQMEKRLKEIEF--PEEYLWEASHYLVKQVFNGIKEMFSATRDIQNWLT 835
Query: 854 DCAKVIASENQPVRWTTPLGLPVVQPYCK---NERHLIRTSLQVLALQ--REGN---LVK 905
+ AK+IA + V W TPLGLP+VQPY + H+ ++ RE + L K
Sbjct: 836 ESAKLIAQSGRTVEWVTPLGLPIVQPYYRIRPTVPHIGHVGMEQAGASHLRELSSQPLTK 895
Query: 906 --IRKQRTAFPPNFVHSLDGSHMMMTAVACRDAGLHFAGL 943
KQ+ AFPPNF+HSLD +HMM+TA+ C GL F +
Sbjct: 896 PDTVKQKNAFPPNFIHSLDSTHMMLTALHCFRQGLTFVSV 935
>UNIPROTKB|E1BCZ0 [details] [associations]
symbol:POLRMT "DNA-directed RNA polymerase" species:9913
"Bos taurus" [GO:0042645 "mitochondrial nucleoid" evidence=IEA]
[GO:0003899 "DNA-directed RNA polymerase activity" evidence=IEA]
[GO:0006351 "transcription, DNA-dependent" evidence=IEA]
[GO:0003677 "DNA binding" evidence=IEA] InterPro:IPR002092
InterPro:IPR024075 Pfam:PF00940 PROSITE:PS00489 PROSITE:PS00900
InterPro:IPR002885 GO:GO:0003677 GO:GO:0006351 GO:GO:0042645
PROSITE:PS51375 TIGRFAMs:TIGR00756 GO:GO:0003899 OMA:WARKGSF
Gene3D:1.10.287.260 PANTHER:PTHR10102 GeneTree:ENSGT00390000008060
EMBL:DAAA02020222 IPI:IPI00698218 Ensembl:ENSBTAT00000020034
Uniprot:E1BCZ0
Length = 1221
Score = 971 (346.9 bits), Expect = 1.6e-100, Sum P(2) = 1.6e-100
Identities = 235/660 (35%), Positives = 356/660 (53%)
Query: 310 KRKKIIADTEEVLSKEKELLR-----KRVNSLIKSKRVMEAQKLLKNEETKPWGRDTQAK 364
KRK++ EE+ + E L +V ++ EA + + +PW +
Sbjct: 499 KRKRLRNQVEELEQRYFEYLHLLASDTQVAEPCLPRQHWEALGVPEAPPEQPWPVSVLVQ 558
Query: 365 LGSRLVELLIETAYVQHPVN-PADYSPPDVRPAFRHRFKTILKHPGQKTTKRYGVVECDP 423
LG +L E+L+ VQ P + A P + P H + ++ ++ G+++ P
Sbjct: 559 LGKQLAEVLVRA--VQMPSSLAAPRGPSTLIPVLYHVYSF-------RSFRQIGILKPHP 609
Query: 424 LVLEGLDRSAKHMLI---PYVPMLVPPKKWKGYNKGGYLFLPSYVMRT-HGSRKQQEALK 479
+ + +A+ LI VPML PP W + G +L P+ +MR+ G+++ Q L+
Sbjct: 610 AFTQLQETAAERTLIFESTEVPMLCPPLPWTSPHSGAFLLSPTKMMRSLEGTQQHQLLLE 669
Query: 480 SVTGNCMKKVFEALDTLGSTKWRVNKQVLSVLESIWVSGGNIAGLVDRNDVLIPEKP--- 536
+ +AL LG+ WRVN +VL ++ ++ G V P P
Sbjct: 670 RCPPAELHGALDALTQLGNCAWRVNGRVLDLVLDLFRDKGCPRLGVPAPPTEAPRPPEGR 729
Query: 537 ------LSEDMTEVQKWKWSVRKAK--KINQERHSQRCDTELKLSVARRMKDEEGFYYPH 588
L + + K + A+ K+ +E S R D +LS+A+ +++ F+ PH
Sbjct: 730 QTPKGCLLPEASPADKAEMRRELARRLKVAREMQSLRADALYRLSLAQHLRNHV-FWLPH 788
Query: 589 NLDFRGRAYPMHPHLNHLSSDVCRGVLEFAEGRPLGKSGLRWLKIHLANLFSGGVEKLSH 648
N+DFRGR YP PH NHL SD+ R +LEFA+GRPLG GL WLKIHL NL +G ++ S
Sbjct: 789 NMDFRGRTYPCSPHFNHLGSDLARALLEFAQGRPLGPHGLDWLKIHLINL-TGLKKRESL 847
Query: 649 DGRLAFVENHLYEIFDSAENPINGSRWWLTAEDPFQCLAACINLSEALKSSSPHSVISHL 708
R + + + +I DSAE P+ G +WW+ A++P+Q LA C+ +++ + S P + ISH
Sbjct: 848 QTRRDYADAVMEDILDSAERPMTGRKWWMEADEPWQTLACCMEIAQVVHSPDPTTYISHF 907
Query: 709 PIHQDGSCNGLQHYAALGRNTLEAAAVNLVAGEKPADVYSEIAVRVHEIMKRDSNKDPSK 768
P+HQDGSCNGLQHYAALGR++ A +VNL + P DVYSE+A +V E+ +R K +
Sbjct: 908 PVHQDGSCNGLQHYAALGRDSTGATSVNLSPSDLPQDVYSEVAAQV-EVFRRQDAKQGVR 966
Query: 769 HPQALLAKILIDQVDRKLVKQTVMTSVYGVTFVGAREQIKRRLEEKGHITDDRQLFA--A 826
+A++L + RK+VKQTVMT VYGVT G R QI++RL E + D Q F A
Sbjct: 967 -----VAQVLEGFISRKVVKQTVMTVVYGVTRYGGRLQIEKRLRE---LEDFPQEFVWEA 1018
Query: 827 ACYAAKVTLTALGEIFEAARSIMGWLGDCAKVIASENQPVRWTTPLGLPVVQPYCKNERH 886
+ Y + +L E+F RSI WL + A++I+ V W TPLG+P++QPY ++ +
Sbjct: 1019 SHYLVRQVFNSLQEMFSGTRSIQRWLTESARLISLTGSAVEWITPLGVPIIQPYHRDSKV 1078
Query: 887 LIRTSLQVLALQRE---GNLVKIRKQRTAFPPNFVHSLDGSHMMMTAVACRDAGLHFAGL 943
+I+ LQ L KQ+ FPPNF+HSLD +HMM+TA+ C GL F +
Sbjct: 1079 MIKGGLQSLTFSSSVDTNQKPNTLKQKNGFPPNFIHSLDSTHMMLTALYCYRKGLTFVSV 1138
Score = 46 (21.3 bits), Expect = 1.6e-100, Sum P(2) = 1.6e-100
Identities = 12/34 (35%), Positives = 21/34 (61%)
Query: 216 IKGLFLGWFGPLSEAIEREQKMQRTKKQKAAYAP 249
++GLF PLS ERE+ ++ +K + A++P
Sbjct: 317 LQGLFSAV--PLSTE-EREELLRAVRKARPAFSP 347
Score = 40 (19.1 bits), Expect = 6.7e-100, Sum P(2) = 6.7e-100
Identities = 12/39 (30%), Positives = 23/39 (58%)
Query: 177 LLRRRQVKQETEAWERMVDEYKELEAKMIEKRLA-PNLP 214
+L+R++++ + E E+ EY L A + ++A P LP
Sbjct: 497 VLKRKRLRNQVEELEQRYFEYLHLLAS--DTQVAEPCLP 533
Score = 40 (19.1 bits), Expect = 6.7e-100, Sum P(2) = 6.7e-100
Identities = 14/49 (28%), Positives = 24/49 (48%)
Query: 322 LSKEKELLRKRVNSLI-KSKRVMEAQKLLKNEETKPWGRDTQAKLGSRL 369
L K+++L+ KR+ L K +++E K +P R KL +L
Sbjct: 121 LDKDQQLIEKRLQQLEGKLPKIVEKSTWEKRLRMEP--RLLSRKLAGQL 167
>FB|FBgn0261938 [details] [associations]
symbol:mtRNApol "mitochondrial RNA polymerase" species:7227
"Drosophila melanogaster" [GO:0005739 "mitochondrion" evidence=ISS]
[GO:0003899 "DNA-directed RNA polymerase activity" evidence=ISS]
[GO:0006351 "transcription, DNA-dependent" evidence=ISS]
[GO:0003677 "DNA binding" evidence=IEA] InterPro:IPR002092
InterPro:IPR024075 Pfam:PF00940 PROSITE:PS00489 PROSITE:PS00900
InterPro:IPR002885 EMBL:AE014134 GO:GO:0003677 GO:GO:0006351
PROSITE:PS51375 TIGRFAMs:TIGR00756 GO:GO:0003899 KO:K10908
OMA:WARKGSF Gene3D:1.10.287.260 PANTHER:PTHR10102
GeneTree:ENSGT00390000008060 HSSP:P00573 FlyBase:FBgn0261938
EMBL:BT011381 RefSeq:NP_608565.1 UniGene:Dm.12209 SMR:Q9VPW4
STRING:Q9VPW4 EnsemblMetazoa:FBtr0077989 EnsemblMetazoa:FBtr0332273
GeneID:33285 KEGG:dme:Dmel_CG4644 CTD:33285 InParanoid:Q9VPW4
GenomeRNAi:33285 NextBio:782857 Uniprot:Q9VPW4
Length = 1369
Score = 939 (335.6 bits), Expect = 2.4e-96, Sum P(2) = 2.4e-96
Identities = 250/752 (33%), Positives = 389/752 (51%)
Query: 223 WFGPLSEAIEREQKMQRTKKQKAA-----YAPHIELLPADKVAVIVMHKMMGLVMAGHED 277
W +S AI R+ R + + Y +++ L A A I++ ++ L G E
Sbjct: 550 WRKQISAAIVRDLNTLRAQVRFKPHGFMNYYTYLKTLDASHFADILIKELYKLA-EGSET 608
Query: 278 RCVQVVQAAVHIGMAIEQEIRIHSFLEKTKNYKRKKIIADTEEVLSK--EKELLRKRVNS 335
V Q +G ++Q +I K +I + E+ ++ R+
Sbjct: 609 FSPTVGQLYKELGQKVQQRYQIEQKKHNGTLEKIGEIYSSYCELWGSGMSQDNTRQAWQR 668
Query: 336 LIKSKRVMEAQKLLKNEETKPWGRDTQAKLGSRLVELLIETAYVQ-HPVNPADYSPPDVR 394
L+ +R E+ + E PW + +G L +L+ + H + S +
Sbjct: 669 LVYEQR--ESGPSMDLLEV-PWPSNVLTGVGRFLYNILMRDIKIDAHIMRQKSKSKAAAQ 725
Query: 395 PA-FRHRFKTILKHPGQKTTKRYGVVECDPLVLEGLDRSAKHMLIPY----VPMLVPPKK 449
P F T+ ++ G+ + V+ P VL L R+++ + + VPML PP+
Sbjct: 726 PQNLLPAFYTLFRNQGRFVKEE---VKPHP-VLSRLFRASRQQTLTFDSNLVPMLCPPQP 781
Query: 450 WKGYNKGGYLFLPSYVMRT-HGSRKQQEALKSVTGNCMKKVFEALDTLGSTKWRVNKQVL 508
W + GGYL + ++R H + +Q + + + + ++L+ L S WRVN Q+L
Sbjct: 782 WSTPHNGGYLLNKTELIRLPHQAIQQWDRIMASNPQHLYPALDSLNQLASVPWRVNTQLL 841
Query: 509 SVLESIWVSGGNIAGLVDRNDVLIPEKPL------------SEDMTEVQKWKWSVRKAKK 556
V+ ++ +GG++ V + +P P SED + + K R+ +
Sbjct: 842 DVIIKVFQNGGDVKLDVPQPPSSLPPLPTLPAKDAEGNATSSEDRAKQFRDKLGHRRKQA 901
Query: 557 INQERHSQRCDTELKLSVARRMKDEEGFYYPHNLDFRGRAYPMHPHLNHLSSDVCRGVLE 616
E +S CD +LS+A+ +D+ F+ PHN+DFRGR YP+ PHLNHL SD+ R +L
Sbjct: 902 ---EMYSLWCDALYRLSLAQHYRDKV-FWLPHNMDFRGRVYPVPPHLNHLGSDLARSMLI 957
Query: 617 FAEGRPLGKSGLRWLKIHLANLFSGGVEKLSHDGRLAFVENHLYEIFDSAENPINGSRWW 676
F + +PLG GL WLK+H NL +G ++ S RL + E + +I DSA+NP+ G WW
Sbjct: 958 FDQAQPLGVDGLSWLKLHCINL-TGLKKRDSVRERLLYAEEIMPDILDSADNPLTGRMWW 1016
Query: 677 LTAEDPFQCLAACINLSEALKSSSPHSVISHLPIHQDGSCNGLQHYAALGRNTLEAAAVN 736
+++P+Q LA C+ ++ + P + +S PIHQDGSCNGLQHYAALGR+ A +VN
Sbjct: 1017 SKSDEPWQTLACCMEIANVHRCPDPAAYLSRFPIHQDGSCNGLQHYAALGRDEAGARSVN 1076
Query: 737 LVAGEKPADVYSEIAVRVHEIMKRDSNKDPSKHPQALLAKILIDQVDRKLVKQTVMTSVY 796
L P DVYS +A V + K D+ H +A+ L V RK++KQTVMT+VY
Sbjct: 1077 LAPSAIPQDVYSAVAALVEKSRKADAQN--GLH----VAEALAGFVRRKVIKQTVMTTVY 1130
Query: 797 GVTFVGAREQIKRRLEEKGHITDDRQLFAAACYAAKVTLTALGEIFEAARSIMGWLGDCA 856
GVT GAR QI R+L++ D ++ A+ Y T +L E+F + R I W +CA
Sbjct: 1131 GVTRYGARLQIARQLKDIDDFPKD-WVWPASTYLTTKTFESLREMFTSTREIQDWFTECA 1189
Query: 857 KVIASE-NQPVRWTTPLGLPVVQPYCKNE-RHLIRTSLQVLALQREGNLVK---IRKQRT 911
++I+ +Q V W TPLGLPVVQPY + E +H R+ +V A +L + I KQ+
Sbjct: 1190 RLISGVCSQNVEWVTPLGLPVVQPYNRQEMKHSPRSGFKVSA-NMPMDLYERPNILKQKN 1248
Query: 912 AFPPNFVHSLDGSHMMMTAVACRDAGLHFAGL 943
AFPPNF+HSLD SHMM+T++ C G+ F +
Sbjct: 1249 AFPPNFIHSLDSSHMMLTSLHCERQGITFVSV 1280
Score = 47 (21.6 bits), Expect = 2.4e-96, Sum P(2) = 2.4e-96
Identities = 12/45 (26%), Positives = 22/45 (48%)
Query: 79 QDSIQSNFMENIENSVDFHIPTCEQEQNFHQRVENTETCADLVIP 123
+D I+S MEN ++ DF + T + H+ ++ E + P
Sbjct: 221 RDIIES--MENDQHEADFGLSTTKVHPEEHEMLDPFEAIEPYISP 263
Score = 40 (19.1 bits), Expect = 1.3e-95, Sum P(2) = 1.3e-95
Identities = 10/34 (29%), Positives = 22/34 (64%)
Query: 228 SEAIEREQKMQRTKKQKAAYAPHIELLPADKVAV 261
++A+ + +K +R +K + YA ++ELL + A+
Sbjct: 84 TDAVAQAKK-KRLRKPR--YAKYVELLEVTEQAI 114
>GENEDB_PFALCIPARUM|PF11_0264 [details] [associations]
symbol:PF11_0264 "DNA-dependent RNA polymerase"
species:5833 "Plasmodium falciparum" [GO:0005739 "mitochondrion"
evidence=ISS] InterPro:IPR002092 InterPro:IPR024075 Pfam:PF00940
PROSITE:PS00489 PROSITE:PS00900 GO:GO:0005739 GO:GO:0003677
GO:GO:0006351 EMBL:AE014186 GO:GO:0003899 KO:K10908
Gene3D:1.10.287.260 PANTHER:PTHR10102 RefSeq:XP_001347935.1
HSSP:P00573 ProteinModelPortal:Q8IIB0
EnsemblProtists:PF11_0264:mRNA GeneID:810811 KEGG:pfa:PF11_0264
EuPathDB:PlasmoDB:PF3D7_1125300 HOGENOM:HOG000282367
ProtClustDB:CLSZ2432452 Uniprot:Q8IIB0
Length = 1531
Score = 571 (206.1 bits), Expect = 8.4e-83, Sum P(4) = 8.4e-83
Identities = 125/355 (35%), Positives = 199/355 (56%)
Query: 411 KTTKRYGVVECDPLVLEGLDRSA--KHMLIPYVPMLVPPKKWKGYNKGGYLFLPSYVMRT 468
K YGV+ L +A H+ + Y+PM+ PK+W+ + +GG L L + +R
Sbjct: 884 KNNNWYGVIHMRECCANYLLNNAINSHIPLNYLPMICKPKRWENF-EGGMLLLKNSFIRC 942
Query: 469 HGSRKQQEALKSVTGNCMKKVFEALDTLGSTKWRVNKQVLSVLESIWVSGGNIAGLVDRN 528
+ K L N +K + + +G+ W++NK++L +E ++ G I +
Sbjct: 943 N--IKPLFNLNVCNLNRIKNI---VSEIGNVGWKINKEILHYIEYAYIHGITIGKIPLYK 997
Query: 529 DVLIPEK-PLSEDMTE-VQKWKWSVRKAKKINQERHSQRCDTELKLSVARRMKDEEGFYY 586
+ +P+ L E E ++K+ + ++N+ S+R KL+VA+ KD + Y+
Sbjct: 998 NYTLPKYINLKEQNNEEIKKYLLLKEEINRLNKCLISERPTFLQKLAVAKTFKDNDIIYF 1057
Query: 587 PHNLDFRGRAYPMHPHLNHLSSDVCRGVLEFAEGRPLGKSGLRWLKIHLANLFSGGVEKL 646
PHN+DFRGR YP+ PHL+H+S D+CR ++ FAE + +G GL WLKIHLAN F G +KL
Sbjct: 1058 PHNIDFRGRMYPLSPHLHHMSDDICRSLITFAEQKEIGNKGLFWLKIHLANTF--GKDKL 1115
Query: 647 SHDGRLAFVENHLYEIFDSAENPINGSRWWLTAEDPFQCLAACINLSEALKSSSPHSVIS 706
S R+ +V+ ++ I + P + +W AE P+Q LA I+L AL+S + S
Sbjct: 1116 SFQKRIQWVDQNINNIKKLTQQPFDNIEFWNMAEKPWQALAVAIDLKNALESPNASKYKS 1175
Query: 707 HLPIHQDGSCNGLQHYAALGRNTLEAAAVNLVAGEKPADVYSEIAVRVHEIMKRD 761
+PI QDG+CNGLQHYAALG++ AVN++ ++P D+YS + V +K D
Sbjct: 1176 SIPIQQDGTCNGLQHYAALGKDKYGGKAVNIIPSDEPQDIYSVVLDIVISKIKND 1230
Score = 310 (114.2 bits), Expect = 8.4e-83, Sum P(4) = 8.4e-83
Identities = 70/174 (40%), Positives = 99/174 (56%)
Query: 760 RDSNKDPSKHPQALLAKILIDQVDRKLVKQTVMTSVYGVTFVGAREQIKRRLEEK-GHIT 818
R+SN + +K+ A D + RK+VKQT+MT YGVT +GA+ Q+K +++ G
Sbjct: 1275 RNSNSNVNKNELASYC-FKFDLLKRKVVKQTIMTICYGVTSIGAKNQVKGKIQTMIGKEL 1333
Query: 819 DDRQLFAAACYAAKVTLTALGEIFEAARSIMGWLGDCAKVIASENQPVRWTTPLGLPVVQ 878
D + + Y A ++ EIF+ A I W + +KV N P+ W +P+GLP Q
Sbjct: 1334 DKNIINKLSQYIANYIFESISEIFKRAMIIKKWFNNLSKVTNELNIPITWISPIGLPCEQ 1393
Query: 879 PYCKNERHLIRTSLQVLAL--QREGNLVKIRKQRTAFPPNFVHSLDGSHMMMTA 930
PY R L+ T LQ +++ + L K KQR FPPNFVHSLD SH+MMTA
Sbjct: 1394 PYRLGNRILVNTPLQSISVISYKNSQLHK-NKQRLGFPPNFVHSLDASHLMMTA 1446
Score = 77 (32.2 bits), Expect = 8.4e-83, Sum P(4) = 8.4e-83
Identities = 16/89 (17%), Positives = 47/89 (52%)
Query: 165 QEYREMKKRKFNLLR-RRQVKQETEAWERMVDEYKELEAKMIEKRLAPNLPHIKGLFLGW 223
+E + ++++ N++ RRQ+ E ++++ ++E +E + + + + + + ++L W
Sbjct: 394 EEKEKEEEKESNIINVRRQMLIERSSYKKAIEEAEEFVSNLHDLKKITEIQGLCKIYLNW 453
Query: 224 FGPLSEAIEREQKMQRTKKQKAAYAPHIE 252
L + I ++ + KK+K + I+
Sbjct: 454 ISELEKRIILYKEKNKNKKKKKIFPDFID 482
Score = 59 (25.8 bits), Expect = 6.4e-81, Sum P(4) = 6.4e-81
Identities = 15/45 (33%), Positives = 24/45 (53%)
Query: 275 HEDRCVQVVQAA--VHIGMAIEQEIRIHSFLEKTKNYKRKKIIAD 317
H+ + + +Q +++ E E RI + EK KN K+KKI D
Sbjct: 435 HDLKKITEIQGLCKIYLNWISELEKRIILYKEKNKNKKKKKIFPD 479
Score = 46 (21.3 bits), Expect = 8.4e-83, Sum P(4) = 8.4e-83
Identities = 10/30 (33%), Positives = 16/30 (53%)
Query: 357 WGRDTQAKLGSRLVELLIETAYVQHPVNPA 386
W +A +G L+ +LIE A + +N A
Sbjct: 679 WNSVKKATIGGLLLNMLIENAKMDVDINVA 708
Score = 39 (18.8 bits), Expect = 2.0e-78, Sum P(3) = 2.0e-78
Identities = 7/23 (30%), Positives = 14/23 (60%)
Query: 25 RKALNIFNTKRDDGSSKILHFLH 47
RK + ++ +KRD ++ F+H
Sbjct: 857 RKEIILYRSKRDRNKIELPVFIH 879
Score = 39 (18.8 bits), Expect = 2.0e-78, Sum P(3) = 2.0e-78
Identities = 9/42 (21%), Positives = 19/42 (45%)
Query: 89 NIENSVDFHIPTCEQEQNFHQRVENTETCADLVIPRSENSTN 130
N N + + ++E NF Q+ ++++ RS+ N
Sbjct: 829 NCANRQELQLSDNKKESNFCQKQREKLMRKEIILYRSKRDRN 870
>UNIPROTKB|Q8IIB0 [details] [associations]
symbol:PF11_0264 "DNA-directed RNA polymerase"
species:36329 "Plasmodium falciparum 3D7" [GO:0005739
"mitochondrion" evidence=ISS] InterPro:IPR002092 InterPro:IPR024075
Pfam:PF00940 PROSITE:PS00489 PROSITE:PS00900 GO:GO:0005739
GO:GO:0003677 GO:GO:0006351 EMBL:AE014186 GO:GO:0003899 KO:K10908
Gene3D:1.10.287.260 PANTHER:PTHR10102 RefSeq:XP_001347935.1
HSSP:P00573 ProteinModelPortal:Q8IIB0
EnsemblProtists:PF11_0264:mRNA GeneID:810811 KEGG:pfa:PF11_0264
EuPathDB:PlasmoDB:PF3D7_1125300 HOGENOM:HOG000282367
ProtClustDB:CLSZ2432452 Uniprot:Q8IIB0
Length = 1531
Score = 571 (206.1 bits), Expect = 8.4e-83, Sum P(4) = 8.4e-83
Identities = 125/355 (35%), Positives = 199/355 (56%)
Query: 411 KTTKRYGVVECDPLVLEGLDRSA--KHMLIPYVPMLVPPKKWKGYNKGGYLFLPSYVMRT 468
K YGV+ L +A H+ + Y+PM+ PK+W+ + +GG L L + +R
Sbjct: 884 KNNNWYGVIHMRECCANYLLNNAINSHIPLNYLPMICKPKRWENF-EGGMLLLKNSFIRC 942
Query: 469 HGSRKQQEALKSVTGNCMKKVFEALDTLGSTKWRVNKQVLSVLESIWVSGGNIAGLVDRN 528
+ K L N +K + + +G+ W++NK++L +E ++ G I +
Sbjct: 943 N--IKPLFNLNVCNLNRIKNI---VSEIGNVGWKINKEILHYIEYAYIHGITIGKIPLYK 997
Query: 529 DVLIPEK-PLSEDMTE-VQKWKWSVRKAKKINQERHSQRCDTELKLSVARRMKDEEGFYY 586
+ +P+ L E E ++K+ + ++N+ S+R KL+VA+ KD + Y+
Sbjct: 998 NYTLPKYINLKEQNNEEIKKYLLLKEEINRLNKCLISERPTFLQKLAVAKTFKDNDIIYF 1057
Query: 587 PHNLDFRGRAYPMHPHLNHLSSDVCRGVLEFAEGRPLGKSGLRWLKIHLANLFSGGVEKL 646
PHN+DFRGR YP+ PHL+H+S D+CR ++ FAE + +G GL WLKIHLAN F G +KL
Sbjct: 1058 PHNIDFRGRMYPLSPHLHHMSDDICRSLITFAEQKEIGNKGLFWLKIHLANTF--GKDKL 1115
Query: 647 SHDGRLAFVENHLYEIFDSAENPINGSRWWLTAEDPFQCLAACINLSEALKSSSPHSVIS 706
S R+ +V+ ++ I + P + +W AE P+Q LA I+L AL+S + S
Sbjct: 1116 SFQKRIQWVDQNINNIKKLTQQPFDNIEFWNMAEKPWQALAVAIDLKNALESPNASKYKS 1175
Query: 707 HLPIHQDGSCNGLQHYAALGRNTLEAAAVNLVAGEKPADVYSEIAVRVHEIMKRD 761
+PI QDG+CNGLQHYAALG++ AVN++ ++P D+YS + V +K D
Sbjct: 1176 SIPIQQDGTCNGLQHYAALGKDKYGGKAVNIIPSDEPQDIYSVVLDIVISKIKND 1230
Score = 310 (114.2 bits), Expect = 8.4e-83, Sum P(4) = 8.4e-83
Identities = 70/174 (40%), Positives = 99/174 (56%)
Query: 760 RDSNKDPSKHPQALLAKILIDQVDRKLVKQTVMTSVYGVTFVGAREQIKRRLEEK-GHIT 818
R+SN + +K+ A D + RK+VKQT+MT YGVT +GA+ Q+K +++ G
Sbjct: 1275 RNSNSNVNKNELASYC-FKFDLLKRKVVKQTIMTICYGVTSIGAKNQVKGKIQTMIGKEL 1333
Query: 819 DDRQLFAAACYAAKVTLTALGEIFEAARSIMGWLGDCAKVIASENQPVRWTTPLGLPVVQ 878
D + + Y A ++ EIF+ A I W + +KV N P+ W +P+GLP Q
Sbjct: 1334 DKNIINKLSQYIANYIFESISEIFKRAMIIKKWFNNLSKVTNELNIPITWISPIGLPCEQ 1393
Query: 879 PYCKNERHLIRTSLQVLAL--QREGNLVKIRKQRTAFPPNFVHSLDGSHMMMTA 930
PY R L+ T LQ +++ + L K KQR FPPNFVHSLD SH+MMTA
Sbjct: 1394 PYRLGNRILVNTPLQSISVISYKNSQLHK-NKQRLGFPPNFVHSLDASHLMMTA 1446
Score = 77 (32.2 bits), Expect = 8.4e-83, Sum P(4) = 8.4e-83
Identities = 16/89 (17%), Positives = 47/89 (52%)
Query: 165 QEYREMKKRKFNLLR-RRQVKQETEAWERMVDEYKELEAKMIEKRLAPNLPHIKGLFLGW 223
+E + ++++ N++ RRQ+ E ++++ ++E +E + + + + + + ++L W
Sbjct: 394 EEKEKEEEKESNIINVRRQMLIERSSYKKAIEEAEEFVSNLHDLKKITEIQGLCKIYLNW 453
Query: 224 FGPLSEAIEREQKMQRTKKQKAAYAPHIE 252
L + I ++ + KK+K + I+
Sbjct: 454 ISELEKRIILYKEKNKNKKKKKIFPDFID 482
Score = 59 (25.8 bits), Expect = 6.4e-81, Sum P(4) = 6.4e-81
Identities = 15/45 (33%), Positives = 24/45 (53%)
Query: 275 HEDRCVQVVQAA--VHIGMAIEQEIRIHSFLEKTKNYKRKKIIAD 317
H+ + + +Q +++ E E RI + EK KN K+KKI D
Sbjct: 435 HDLKKITEIQGLCKIYLNWISELEKRIILYKEKNKNKKKKKIFPD 479
Score = 46 (21.3 bits), Expect = 8.4e-83, Sum P(4) = 8.4e-83
Identities = 10/30 (33%), Positives = 16/30 (53%)
Query: 357 WGRDTQAKLGSRLVELLIETAYVQHPVNPA 386
W +A +G L+ +LIE A + +N A
Sbjct: 679 WNSVKKATIGGLLLNMLIENAKMDVDINVA 708
Score = 39 (18.8 bits), Expect = 2.0e-78, Sum P(3) = 2.0e-78
Identities = 7/23 (30%), Positives = 14/23 (60%)
Query: 25 RKALNIFNTKRDDGSSKILHFLH 47
RK + ++ +KRD ++ F+H
Sbjct: 857 RKEIILYRSKRDRNKIELPVFIH 879
Score = 39 (18.8 bits), Expect = 2.0e-78, Sum P(3) = 2.0e-78
Identities = 9/42 (21%), Positives = 19/42 (45%)
Query: 89 NIENSVDFHIPTCEQEQNFHQRVENTETCADLVIPRSENSTN 130
N N + + ++E NF Q+ ++++ RS+ N
Sbjct: 829 NCANRQELQLSDNKKESNFCQKQREKLMRKEIILYRSKRDRN 870
>WB|WBGene00013680 [details] [associations]
symbol:Y105E8A.23 species:6239 "Caenorhabditis elegans"
[GO:0003677 "DNA binding" evidence=IEA] [GO:0003899 "DNA-directed
RNA polymerase activity" evidence=IEA] [GO:0006351 "transcription,
DNA-dependent" evidence=IEA] [GO:0040010 "positive regulation of
growth rate" evidence=IMP] [GO:0000003 "reproduction" evidence=IMP]
[GO:0007413 "axonal fasciculation" evidence=IMP] [GO:0006898
"receptor-mediated endocytosis" evidence=IMP] InterPro:IPR002092
InterPro:IPR024075 Pfam:PF00940 PROSITE:PS00489 PROSITE:PS00900
GO:GO:0006898 GO:GO:0040010 GO:GO:0003677 GO:GO:0000003
GO:GO:0006351 GO:GO:0007413 GO:GO:0003899 EMBL:AL132876
eggNOG:COG5108 KO:K10908 Gene3D:1.10.287.260 PANTHER:PTHR10102
GeneTree:ENSGT00390000008060 RefSeq:NP_001122532.1 UniGene:Cel.5359
ProteinModelPortal:A5PEY3 PaxDb:A5PEY3 EnsemblMetazoa:Y105E8A.23b
GeneID:173317 KEGG:cel:CELE_Y105E8A.23 UCSC:Y105E8A.23a CTD:173317
WormBase:Y105E8A.23b HOGENOM:HOG000285932 InParanoid:A5PEY3
OMA:FWTHANS NextBio:879131 ArrayExpress:A5PEY3 Uniprot:A5PEY3
Length = 1156
Score = 669 (240.6 bits), Expect = 3.5e-74, Sum P(3) = 3.5e-74
Identities = 160/426 (37%), Positives = 248/426 (58%)
Query: 539 EDMTEVQKWK-WSVRKAK--KINQERHSQRCDTELKLSVARRMKDEEGFYYPHNLDFRGR 595
ED+ +V+K++ ++ +KA+ K+ E +S C + ++ +A + + ++PHN+DFRGR
Sbjct: 659 EDV-DVEKFRSYAKKKAEAIKMRNESNSLWCWMQYRVVLADHFRGQT-LFFPHNMDFRGR 716
Query: 596 AYPMHPHLNHLSSDVCRGVLEFAEGRPLGKSGLRWLKIHLANLFSGGVEKLSHDGRLAFV 655
YP+ P+L+H+ DV R +L+FA+ + LG+ G WLK+H NL +G +++ S R+
Sbjct: 717 VYPLSPYLSHMGDDVNRCILKFAKSQKLGEKGFDWLKLHCINL-TGTMKRSSVADRMVEA 775
Query: 656 ENHLYEIFDSAENPINGSRWWLTAEDPFQCLAACINLSEALKSSSPHSVI-SHLPIHQDG 714
E + + DSA +P+NG +WW+++++P+Q LAAC+ + A + S ++ S LPIHQDG
Sbjct: 776 ERLIPLMLDSARDPLNGQKWWMSSDEPWQTLAACVEIENATRYGSDVALFPSQLPIHQDG 835
Query: 715 SCNGLQHYAALGRNTLEAAAVNLVAGEKPADVYSEIAVRVHEIMKRDSNKDPSKHPQAL- 773
SCNGLQHYAALGR+ VNL + P DVYS++A RV + ++D + A
Sbjct: 836 SCNGLQHYAALGRDNEGGVQVNLTQSDTPNDVYSDVAQRVEQKRQQDEQSNGEDCDVARK 895
Query: 774 LAKILIDQVDRKLVKQTVMTSVYGVTFVGAREQIKRRLEEKGHITDDRQLFAAACYAAKV 833
L + L V RK++KQTVMT+VYGVT GA QIKR+L+ +D +FA Y A+
Sbjct: 896 LREALPQNVPRKVIKQTVMTTVYGVTMYGAVLQIKRQLKAMDIPGEDAAIFAR--YLARK 953
Query: 834 TLTALGEIFEAARSIMGWLGDCAKVIASENQPVRWTTPLGLPV-VQPYCKNERHLIRT-- 890
T +L + AR + K AS N +T+ + L + K L++T
Sbjct: 954 TFASLNDAAIFARYL------ARKTFASLNDA--FTSSMALKDWFRLIAKGSSDLMKTVE 1005
Query: 891 -----SLQVLA-----LQREGNLVKI---RKQRTAFPPNFVHSLDGSHMMMTAVACRDAG 937
L V+ ++R+G L+ KQ AFPPNFVHSLD +HMM+T++ C G
Sbjct: 1006 WITPLGLPVVQPYCKLVERKGKLILAPVPMKQVDAFPPNFVHSLDSTHMMLTSLNCAQRG 1065
Query: 938 LHFAGL 943
+ FA +
Sbjct: 1066 ITFAAV 1071
Score = 127 (49.8 bits), Expect = 3.5e-74, Sum P(3) = 3.5e-74
Identities = 31/99 (31%), Positives = 52/99 (52%)
Query: 441 VPMLVPPKKWKGYNKGGYLFLPSY------VMRTHGSRKQQEALKSVTGNCMKK-VFEAL 493
+PM+VPP+ W GG L+ S +M R +E +T + VF+AL
Sbjct: 538 LPMIVPPRPWIDRGTGGPLYTTSQHEIIRKMMEFRAVRLNEEMRARITSQAQARPVFDAL 597
Query: 494 DTLGSTKWRVNKQVLSVLESIWVSGGNIA--GLVDRNDV 530
+ LGST W +N+ +L VL+ ++ GN GL+++ ++
Sbjct: 598 NQLGSTPWVINEPMLDVLKDVFGRSGNSESRGLLEKLEI 636
Score = 53 (23.7 bits), Expect = 2.0e-66, Sum P(3) = 2.0e-66
Identities = 18/82 (21%), Positives = 36/82 (43%)
Query: 476 EALKSVTGNCMKKVFEA----LDTLGSTKW-RVNKQVLSVLESIWVSGGNIAGLVDRNDV 530
E + + GNC + + +D + + + R+ + L+V S+W+ N G N+
Sbjct: 249 ELVAPLQGNCSSEEYRMNPFQVDGIEKSNYKRLFEDHLNVESSMWIHVKNTVGEAAENNN 308
Query: 531 LIPEKPLSEDMTEVQKWKWSVR 552
+ ED+ + +W W R
Sbjct: 309 AVS----GEDL--ISEWDWKRR 324
Score = 53 (23.7 bits), Expect = 2.1e-65, Sum P(2) = 2.1e-65
Identities = 20/72 (27%), Positives = 31/72 (43%)
Query: 121 VIPRSENSTNHQLM-CLEPRRRIFVQDPPWFSSIFLKGLYKR-IKLQEYREMKKRKFNLL 178
V RS NS + L+ LE R D P F F G+ K + ++++R K+K +
Sbjct: 618 VFGRSGNSESRGLLEKLEIPMRHDTFDIPDFGREFGIGIKKEDVDVEKFRSYAKKKAEAI 677
Query: 179 RRRQVKQETEAW 190
+ R W
Sbjct: 678 KMRNESNSLWCW 689
Score = 41 (19.5 bits), Expect = 3.5e-74, Sum P(3) = 3.5e-74
Identities = 7/23 (30%), Positives = 15/23 (65%)
Query: 182 QVKQETEAWERMVDEYKELEAKM 204
Q K + ++W+ + D + E++ KM
Sbjct: 172 QRKFDAKSWKTIEDLFDEMQRKM 194
>CGD|CAL0002343 [details] [associations]
symbol:orf19.6499 species:5476 "Candida albicans" [GO:0005575
"cellular_component" evidence=ND] InterPro:IPR002092 Pfam:PF00940
PROSITE:PS00489 PROSITE:PS00900 CGD:CAL0002343 GO:GO:0003677
GO:GO:0006351 EMBL:AACQ01000020 EMBL:AACQ01000016 GO:GO:0003899
eggNOG:COG5108 KO:K10908 PANTHER:PTHR10102 RefSeq:XP_720824.1
RefSeq:XP_721337.1 RefSeq:XP_888836.1 ProteinModelPortal:Q5AH39
GeneID:3636994 GeneID:3637444 GeneID:3703847 KEGG:cal:CaO19.13852
KEGG:cal:CaO19.6499 KEGG:cal:CaO19_6499 Uniprot:Q5AH39
Length = 1218
Score = 444 (161.4 bits), Expect = 1.0e-54, Sum P(4) = 1.0e-54
Identities = 115/320 (35%), Positives = 161/320 (50%)
Query: 555 KKINQERHSQRCDTELKLSVARRMKDEEG--FYYPHNLDFRGRAYPMHPHLNHLSSDVCR 612
+K E S R E+ +A E G Y+ ++LDFRGR YP P L H D+ R
Sbjct: 626 QKTKTELKSLRITFEIMNKLANAF-GENGDLLYHCYSLDFRGRIYPFSP-LTHYGGDLAR 683
Query: 613 GVLEFAEGRPLGKSGLRWLKIHLANLFSGGVEKLSHDGRLAFVENHLYEIFDSAENPING 672
+ F PLG +G W+K LA+LF +K L F E + I DSA NP+ G
Sbjct: 684 SLFMFWYSEPLGPNGFYWIKYQLASLFG---QK----NCLEFYEENYDNIIDSARNPMTG 736
Query: 673 SRWWLTAEDPFQCLAACINLSEALKSSSPHSVIS----HLPIHQDGSCNGLQHYAALGRN 728
+WW+ A+ PF LA C + + L I LPIHQDGSCNGLQHYA L +
Sbjct: 737 KKWWMKADKPFSALAVCFEIKKILDYRMSGGKIEDYKCRLPIHQDGSCNGLQHYAGLAAD 796
Query: 729 TLEAAAVNLVAGEKPADVYSEIAVRVHEIMKRDSNKDPSKHPQALLAKILIDQVDRKLVK 788
AAVNL+ E DVY+++ V + +++D ++ AK + ++RKLVK
Sbjct: 797 ETGGAAVNLIRSETKQDVYTKVLEIVKKKIEQDISEQNLGTVNLETAKFFLPILNRKLVK 856
Query: 789 QTVMTSVYGVTFVGAREQIKRRLEE--KGHITD-DRQLFA-------------AACYAAK 832
+ VMT+VYGVT GA QI + ++E + H T+ + F+ Y AK
Sbjct: 857 RPVMTTVYGVTLAGASSQIMQTIKEIVEDHRTNPSKTTFSNETLHKLKSVQLTQTSYLAK 916
Query: 833 VTLTALGEIFEAARSIMGWL 852
L ++ E+F A+ I WL
Sbjct: 917 KILDSIDELFVHAKQIEKWL 936
Score = 129 (50.5 bits), Expect = 1.0e-54, Sum P(4) = 1.0e-54
Identities = 27/81 (33%), Positives = 39/81 (48%)
Query: 865 PVRWTTPLGLPVVQPYCKNERHLIRTSLQVLALQREGNLVKI--RKQRTAFPPNFVHSLD 922
P+ W +P GLPV+Q Y K ++ L + RK PNF+HSLD
Sbjct: 975 PMSWISPCGLPVIQAYRKIPTSRFNGAIGKTTWNNSNKLSPMDRRKHELGIAPNFIHSLD 1034
Query: 923 GSHMMMTAVACRDAGLHFAGL 943
+H+ MT + AGL F+ +
Sbjct: 1035 AAHLFMTCDSANKAGLTFSAI 1055
Score = 125 (49.1 bits), Expect = 1.0e-54, Sum P(4) = 1.0e-54
Identities = 43/144 (29%), Positives = 63/144 (43%)
Query: 414 KRYGVVECDPLVLEGLDRSAKHMLIPYVPMLVPPKKWKGYNKGGYLFLPSYVMRTHGSRK 473
K Y +V+ P + L + Y+PML PPK W GGYL + + + T+ S
Sbjct: 505 KTYIIVKMHPYIELKLQSLKLGTHLHYLPMLHPPKPWVNPQSGGYLTIKTSFVSTNDSI- 563
Query: 474 QQEALK--SVTGNCMKKVFEALDTLGSTKWRVNKQVLSVLESIWVSGGNIAGLVDRNDVL 531
Q E L V G + + LD +G+T W +N +L V + GN G +
Sbjct: 564 QVELLNRAGVRGQ-LDNAYSCLDQMGNTAWAINPLMLDVFNKLM---GNPDGFLS----- 614
Query: 532 IPEKPLSEDMTEVQKWKWSVRKAK 555
IP P D T QK K ++ +
Sbjct: 615 IP--PSVPDETLPQKTKTELKSLR 636
Score = 46 (21.3 bits), Expect = 1.0e-54, Sum P(4) = 1.0e-54
Identities = 16/52 (30%), Positives = 21/52 (40%)
Query: 90 IEN-SVDFHIPTCEQEQNFHQRVENTETCADLVIPRSENSTNHQLMCLEPRR 140
IEN V EQ QN ++EN E +I N + C E +R
Sbjct: 448 IENCKVPITSKQMEQLQN-SLKLENKEIADQFLISSGGNDDEYLAFCKETKR 498
Score = 40 (19.1 bits), Expect = 4.2e-54, Sum P(4) = 4.2e-54
Identities = 12/31 (38%), Positives = 16/31 (51%)
Query: 349 LKNEETKPWGRDTQAKLGSRLVELLIETAYV 379
LK E + D KL +LV+L+IE V
Sbjct: 423 LKGEVFQYINDDAYIKLTHQLVKLIIENCKV 453
>UNIPROTKB|Q5AH39 [details] [associations]
symbol:CaO19.13852 "DNA-directed RNA polymerase"
species:237561 "Candida albicans SC5314" [GO:0005575
"cellular_component" evidence=ND] InterPro:IPR002092 Pfam:PF00940
PROSITE:PS00489 PROSITE:PS00900 CGD:CAL0002343 GO:GO:0003677
GO:GO:0006351 EMBL:AACQ01000020 EMBL:AACQ01000016 GO:GO:0003899
eggNOG:COG5108 KO:K10908 PANTHER:PTHR10102 RefSeq:XP_720824.1
RefSeq:XP_721337.1 RefSeq:XP_888836.1 ProteinModelPortal:Q5AH39
GeneID:3636994 GeneID:3637444 GeneID:3703847 KEGG:cal:CaO19.13852
KEGG:cal:CaO19.6499 KEGG:cal:CaO19_6499 Uniprot:Q5AH39
Length = 1218
Score = 444 (161.4 bits), Expect = 1.0e-54, Sum P(4) = 1.0e-54
Identities = 115/320 (35%), Positives = 161/320 (50%)
Query: 555 KKINQERHSQRCDTELKLSVARRMKDEEG--FYYPHNLDFRGRAYPMHPHLNHLSSDVCR 612
+K E S R E+ +A E G Y+ ++LDFRGR YP P L H D+ R
Sbjct: 626 QKTKTELKSLRITFEIMNKLANAF-GENGDLLYHCYSLDFRGRIYPFSP-LTHYGGDLAR 683
Query: 613 GVLEFAEGRPLGKSGLRWLKIHLANLFSGGVEKLSHDGRLAFVENHLYEIFDSAENPING 672
+ F PLG +G W+K LA+LF +K L F E + I DSA NP+ G
Sbjct: 684 SLFMFWYSEPLGPNGFYWIKYQLASLFG---QK----NCLEFYEENYDNIIDSARNPMTG 736
Query: 673 SRWWLTAEDPFQCLAACINLSEALKSSSPHSVIS----HLPIHQDGSCNGLQHYAALGRN 728
+WW+ A+ PF LA C + + L I LPIHQDGSCNGLQHYA L +
Sbjct: 737 KKWWMKADKPFSALAVCFEIKKILDYRMSGGKIEDYKCRLPIHQDGSCNGLQHYAGLAAD 796
Query: 729 TLEAAAVNLVAGEKPADVYSEIAVRVHEIMKRDSNKDPSKHPQALLAKILIDQVDRKLVK 788
AAVNL+ E DVY+++ V + +++D ++ AK + ++RKLVK
Sbjct: 797 ETGGAAVNLIRSETKQDVYTKVLEIVKKKIEQDISEQNLGTVNLETAKFFLPILNRKLVK 856
Query: 789 QTVMTSVYGVTFVGAREQIKRRLEE--KGHITD-DRQLFA-------------AACYAAK 832
+ VMT+VYGVT GA QI + ++E + H T+ + F+ Y AK
Sbjct: 857 RPVMTTVYGVTLAGASSQIMQTIKEIVEDHRTNPSKTTFSNETLHKLKSVQLTQTSYLAK 916
Query: 833 VTLTALGEIFEAARSIMGWL 852
L ++ E+F A+ I WL
Sbjct: 917 KILDSIDELFVHAKQIEKWL 936
Score = 129 (50.5 bits), Expect = 1.0e-54, Sum P(4) = 1.0e-54
Identities = 27/81 (33%), Positives = 39/81 (48%)
Query: 865 PVRWTTPLGLPVVQPYCKNERHLIRTSLQVLALQREGNLVKI--RKQRTAFPPNFVHSLD 922
P+ W +P GLPV+Q Y K ++ L + RK PNF+HSLD
Sbjct: 975 PMSWISPCGLPVIQAYRKIPTSRFNGAIGKTTWNNSNKLSPMDRRKHELGIAPNFIHSLD 1034
Query: 923 GSHMMMTAVACRDAGLHFAGL 943
+H+ MT + AGL F+ +
Sbjct: 1035 AAHLFMTCDSANKAGLTFSAI 1055
Score = 125 (49.1 bits), Expect = 1.0e-54, Sum P(4) = 1.0e-54
Identities = 43/144 (29%), Positives = 63/144 (43%)
Query: 414 KRYGVVECDPLVLEGLDRSAKHMLIPYVPMLVPPKKWKGYNKGGYLFLPSYVMRTHGSRK 473
K Y +V+ P + L + Y+PML PPK W GGYL + + + T+ S
Sbjct: 505 KTYIIVKMHPYIELKLQSLKLGTHLHYLPMLHPPKPWVNPQSGGYLTIKTSFVSTNDSI- 563
Query: 474 QQEALK--SVTGNCMKKVFEALDTLGSTKWRVNKQVLSVLESIWVSGGNIAGLVDRNDVL 531
Q E L V G + + LD +G+T W +N +L V + GN G +
Sbjct: 564 QVELLNRAGVRGQ-LDNAYSCLDQMGNTAWAINPLMLDVFNKLM---GNPDGFLS----- 614
Query: 532 IPEKPLSEDMTEVQKWKWSVRKAK 555
IP P D T QK K ++ +
Sbjct: 615 IP--PSVPDETLPQKTKTELKSLR 636
Score = 46 (21.3 bits), Expect = 1.0e-54, Sum P(4) = 1.0e-54
Identities = 16/52 (30%), Positives = 21/52 (40%)
Query: 90 IEN-SVDFHIPTCEQEQNFHQRVENTETCADLVIPRSENSTNHQLMCLEPRR 140
IEN V EQ QN ++EN E +I N + C E +R
Sbjct: 448 IENCKVPITSKQMEQLQN-SLKLENKEIADQFLISSGGNDDEYLAFCKETKR 498
Score = 40 (19.1 bits), Expect = 4.2e-54, Sum P(4) = 4.2e-54
Identities = 12/31 (38%), Positives = 16/31 (51%)
Query: 349 LKNEETKPWGRDTQAKLGSRLVELLIETAYV 379
LK E + D KL +LV+L+IE V
Sbjct: 423 LKGEVFQYINDDAYIKLTHQLVKLIIENCKV 453
>UNIPROTKB|K7ESD1 [details] [associations]
symbol:POLRMT "DNA-directed RNA polymerase, mitochondrial"
species:9606 "Homo sapiens" [GO:0003677 "DNA binding" evidence=IEA]
[GO:0003899 "DNA-directed RNA polymerase activity" evidence=IEA]
[GO:0006351 "transcription, DNA-dependent" evidence=IEA]
InterPro:IPR002092 Pfam:PF00940 EMBL:AC004449 HGNC:HGNC:9200
PANTHER:PTHR10102 Ensembl:ENST00000590336 Uniprot:K7ESD1
Length = 143
Score = 126 (49.4 bits), Expect = 7.4e-07, P = 7.4e-07
Identities = 26/43 (60%), Positives = 31/43 (72%)
Query: 907 RKQRTAFPPNFVHSLDGSHMMMTAVAC-RDAGL-HFAGLSFQS 947
RKQ+ FPPNF+HSLD SHMM+TA+ C R L H GL+F S
Sbjct: 20 RKQKNGFPPNFIHSLDSSHMMLTALHCYRSPPLCHRKGLTFVS 62
Parameters:
V=100
filter=SEG
E=0.001
ctxfactor=1.00
Query ----- As Used ----- ----- Computed ----
Frame MatID Matrix name Lambda K H Lambda K H
+0 0 BLOSUM62 0.319 0.134 0.400 same same same
Q=9,R=2 0.244 0.0300 0.180 n/a n/a n/a
Query
Frame MatID Length Eff.Length E S W T X E2 S2
+0 0 952 921 0.00090 122 3 11 22 0.38 34
37 0.45 37
Statistics:
Database: /share/blast/go-seqdb.fasta
Title: go_20130330-seqdb.fasta
Posted: 5:47:42 AM PDT Apr 1, 2013
Created: 5:47:42 AM PDT Apr 1, 2013
Format: XDF-1
# of letters in database: 169,044,731
# of sequences in database: 368,745
# of database sequences satisfying E: 25
No. of states in DFA: 629 (67 KB)
Total size of DFA: 458 KB (2216 KB)
Time to generate neighborhood: 0.00u 0.00s 0.00t Elapsed: 00:00:00
No. of threads or processors used: 24
Search cpu time: 86.15u 0.13s 86.28t Elapsed: 00:00:04
Total cpu time: 86.17u 0.13s 86.30t Elapsed: 00:00:04
Start: Sat May 11 03:02:19 2013 End: Sat May 11 03:02:23 2013