BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 002216
(952 letters)
Database: nr
23,463,169 sequences; 8,064,228,071 total letters
Searching..................................................done
>gi|224143911|ref|XP_002325119.1| predicted protein [Populus trichocarpa]
gi|222866553|gb|EEF03684.1| predicted protein [Populus trichocarpa]
Length = 882
Score = 1384 bits (3582), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 641/811 (79%), Positives = 740/811 (91%), Gaps = 5/811 (0%)
Query: 137 EPRRRIFVQDPPWFSSIFLKGLYK----RIKLQEYREMKKRKFNLLRRRQVKQETEAWER 192
E +++F+QDPPW S+ F KG+YK ++K+ E+++++KRK+NLLRRRQ+++ETEAWER
Sbjct: 4 ESSKKVFIQDPPWISAHFWKGMYKLANKKVKV-EFKDIEKRKYNLLRRRQIREETEAWER 62
Query: 193 MVDEYKELEAKMIEKRLAPNLPHIKGLFLGWFGPLSEAIEREQKMQRTKKQKAAYAPHIE 252
M DEY+ L +M E++LAPNLP++KGL LGWF PL EAIE+EQKM+++KKQK+A++P+IE
Sbjct: 63 MADEYRGLVREMCERKLAPNLPYVKGLLLGWFEPLKEAIEKEQKMEKSKKQKSAFSPNIE 122
Query: 253 LLPADKVAVIVMHKMMGLVMAGHEDRCVQVVQAAVHIGMAIEQEIRIHSFLEKTKNYKRK 312
LLPADK+AVIVMHKMMGL+M GHED CV+VVQAAV IGMAIEQE+RIH+FLEKTKNY+RK
Sbjct: 123 LLPADKMAVIVMHKMMGLLMVGHEDGCVRVVQAAVQIGMAIEQEVRIHNFLEKTKNYQRK 182
Query: 313 KIIADTEEVLSKEKELLRKRVNSLIKSKRVMEAQKLLKNEETKPWGRDTQAKLGSRLVEL 372
K + + +E + KEKE+LRKRVNSLI+ KR+ME Q L+K +ETKPW R TQAKLGSRL+EL
Sbjct: 183 KTMHEVQETMDKEKEVLRKRVNSLIRRKRLMEVQNLVKQDETKPWSRGTQAKLGSRLIEL 242
Query: 373 LIETAYVQHPVNPADYSPPDVRPAFRHRFKTILKHPGQKTTKRYGVVECDPLVLEGLDRS 432
L ETAYVQ PVN ++ PPDVRPAFRH FKT+ K+PGQK K+YGV+ECDPL+L GLD +
Sbjct: 243 LTETAYVQPPVNQSEDIPPDVRPAFRHIFKTLTKNPGQKIVKKYGVIECDPLILTGLDGT 302
Query: 433 AKHMLIPYVPMLVPPKKWKGYNKGGYLFLPSYVMRTHGSRKQQEALKSVTGNCMKKVFEA 492
AKHMLIPY PMLVPPKKWKGY+KGG+LFLPSYVMRTHGSR+QQ A++SV G M+KVFEA
Sbjct: 303 AKHMLIPYFPMLVPPKKWKGYDKGGHLFLPSYVMRTHGSRQQQVAVRSVPGKQMQKVFEA 362
Query: 493 LDTLGSTKWRVNKQVLSVLESIWVSGGNIAGLVDRNDVLIPEKPLSEDMTEVQKWKWSVR 552
LDTLG+TKWRVN+++L V+E IW SGGNIAGLVDR D+ IPEKP S+D+TE+QKWKWSVR
Sbjct: 363 LDTLGNTKWRVNRRLLDVVERIWTSGGNIAGLVDREDIPIPEKPSSDDLTEIQKWKWSVR 422
Query: 553 KAKKINQERHSQRCDTELKLSVARRMKDEEGFYYPHNLDFRGRAYPMHPHLNHLSSDVCR 612
KAKKINQERHSQRCDTELKLSVAR++KDEEGFYYPHNLDFRGRAYPMHPHL HLSSD+CR
Sbjct: 423 KAKKINQERHSQRCDTELKLSVARKLKDEEGFYYPHNLDFRGRAYPMHPHLTHLSSDLCR 482
Query: 613 GVLEFAEGRPLGKSGLRWLKIHLANLFSGGVEKLSHDGRLAFVENHLYEIFDSAENPING 672
GVLEF EGRPLGKSGLRWLKIHLANL+SGGVEKLSHDGRLAFVENHL EIFDSA+NP+NG
Sbjct: 483 GVLEFEEGRPLGKSGLRWLKIHLANLYSGGVEKLSHDGRLAFVENHLSEIFDSAKNPVNG 542
Query: 673 SRWWLTAEDPFQCLAACINLSEALKSSSPHSVISHLPIHQDGSCNGLQHYAALGRNTLEA 732
RWWL AEDPFQCLAACINLSEAL S+SPH+VISHLPIHQDGSCNGLQHYAALGR+TLEA
Sbjct: 543 KRWWLKAEDPFQCLAACINLSEALNSASPHTVISHLPIHQDGSCNGLQHYAALGRDTLEA 602
Query: 733 AAVNLVAGEKPADVYSEIAVRVHEIMKRDSNKDPSKHPQALLAKILIDQVDRKLVKQTVM 792
AAVNLVA EKP+DVYSEIAVRVHEI++RDSNKDP+ +P ALLAKIL+DQVDRKLVKQTVM
Sbjct: 603 AAVNLVAAEKPSDVYSEIAVRVHEIIRRDSNKDPATNPHALLAKILVDQVDRKLVKQTVM 662
Query: 793 TSVYGVTFVGAREQIKRRLEEKGHITDDRQLFAAACYAAKVTLTALGEIFEAARSIMGWL 852
TSVYGVT+VGAREQIKRRLEEKGHITDDR LF+AACY AKVTLTALGE+F+AAR IM WL
Sbjct: 663 TSVYGVTYVGAREQIKRRLEEKGHITDDRLLFSAACYTAKVTLTALGELFQAARDIMSWL 722
Query: 853 GDCAKVIASENQPVRWTTPLGLPVVQPYCKNERHLIRTSLQVLALQREGNLVKIRKQRTA 912
GDCAK+IASE+QPV+WTTPLGLPVVQPY K ERHLI+TSLQ+LALQREG+ V++RKQRTA
Sbjct: 723 GDCAKIIASEDQPVQWTTPLGLPVVQPYYKTERHLIKTSLQILALQREGSSVQVRKQRTA 782
Query: 913 FPPNFVHSLDGSHMMMTAVACRDAGLHFAGL 943
FPPNFVHSLDGSHMMMTAVACRDAGL FAG+
Sbjct: 783 FPPNFVHSLDGSHMMMTAVACRDAGLCFAGV 813
>gi|224088334|ref|XP_002308414.1| predicted protein [Populus trichocarpa]
gi|222854390|gb|EEE91937.1| predicted protein [Populus trichocarpa]
Length = 982
Score = 1375 bits (3558), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 677/951 (71%), Positives = 791/951 (83%), Gaps = 46/951 (4%)
Query: 1 MASAASISQIQYPPTCSTSTTTATRKALNIFNTKRDDGSSKILHFLHSCSSSSSSSSSFP 60
MAS S IQ+P T TT+ T K + K LHFL + SS S S+ S
Sbjct: 1 MASTTPFS-IQHP----TWTTSKTLKFHEPY---------KNLHFLSNPSSHSLSNPSLS 46
Query: 61 VNLKSSSSKPTRLRP----RPLQDSIQSNFMENIENSVDFHIPTCEQEQNFHQRVENTET 116
+ + K + L P PL DS +E DF IPT N HQ++E T
Sbjct: 47 SSSFPLNPKLSILNPPLLFHPLHDSSHDRLLE------DFEIPTI----NNHQKLE-TLI 95
Query: 117 CADLVIPRSENSTNHQLMCLEPRRRIFVQDPPWFSSIFLKGLYK----RIKLQEYREMKK 172
D Q++ E +R+F++D PW S+++ KG +K ++KL E ++++K
Sbjct: 96 KFD------------QIVHGESSKRVFIRDSPWISALYWKGTHKIANKKVKL-ELKDIEK 142
Query: 173 RKFNLLRRRQVKQETEAWERMVDEYKELEAKMIEKRLAPNLPHIKGLFLGWFGPLSEAIE 232
RK+NLLRRRQ+++ETEAWERM +EY L +M E++LAPNLP++K LFLGWF PL EAIE
Sbjct: 143 RKYNLLRRRQIREETEAWERMAEEYTGLVKEMCERKLAPNLPYVKSLFLGWFEPLKEAIE 202
Query: 233 REQKMQRTKKQKAAYAPHIELLPADKVAVIVMHKMMGLVMAGHEDRCVQVVQAAVHIGMA 292
REQK++++KKQK+A++P+IELLPADK+AVIVMHKMMGLVM GHED CV+VVQAAV IG+A
Sbjct: 203 REQKLEKSKKQKSAFSPNIELLPADKMAVIVMHKMMGLVMVGHEDGCVRVVQAAVQIGIA 262
Query: 293 IEQEIRIHSFLEKTKNYKRKKIIADTEEVLSKEKELLRKRVNSLIKSKRVMEAQKLLKNE 352
IEQE+RIH+FLEKTKN++RKK + D +E + KEKE+LRKRVNSLI+ KR+ME Q L+ +
Sbjct: 263 IEQEVRIHNFLEKTKNHQRKKTMHDVQESMDKEKEMLRKRVNSLIRRKRLMEVQNLVIQD 322
Query: 353 ETKPWGRDTQAKLGSRLVELLIETAYVQHPVNPADYSPPDVRPAFRHRFKTILKHPGQKT 412
ETKPW RD QAKLGSRL+ELL ETAYVQ PV+ ++ PPDVRPAFRH FK++ K+PGQKT
Sbjct: 323 ETKPWNRDKQAKLGSRLIELLTETAYVQPPVDQSEGIPPDVRPAFRHIFKSVTKNPGQKT 382
Query: 413 TKRYGVVECDPLVLEGLDRSAKHMLIPYVPMLVPPKKWKGYNKGGYLFLPSYVMRTHGSR 472
K+YGV+ECDPL+L GLD +AKHMLIPY PMLVPPKKW+GY+KGG+LFLPSY+MRTHGSR
Sbjct: 383 VKKYGVIECDPLILTGLDGTAKHMLIPYFPMLVPPKKWRGYDKGGHLFLPSYIMRTHGSR 442
Query: 473 KQQEALKSVTGNCMKKVFEALDTLGSTKWRVNKQVLSVLESIWVSGGNIAGLVDRNDVLI 532
+QQ+A++SV G M+KVFEALDTLG+TKWRVN +VL V+E IW SGGN AGLV+R D+ I
Sbjct: 443 QQQDAVRSVPGKQMQKVFEALDTLGNTKWRVNGKVLDVVERIWASGGNNAGLVNRGDIPI 502
Query: 533 PEKPLSEDMTEVQKWKWSVRKAKKINQERHSQRCDTELKLSVARRMKDEEGFYYPHNLDF 592
PEK S+D+TE+QKWKWSVRKAKKINQERHSQRCDTELKLSVAR++KDEEGFYYPHNLDF
Sbjct: 503 PEKLSSDDLTEIQKWKWSVRKAKKINQERHSQRCDTELKLSVARKLKDEEGFYYPHNLDF 562
Query: 593 RGRAYPMHPHLNHLSSDVCRGVLEFAEGRPLGKSGLRWLKIHLANLFSGGVEKLSHDGRL 652
RGRAYPMHPHL HLSSD+CRGVLEFAEGRPLGKSGL WLKIHLANL+SGGVEKLSHDGRL
Sbjct: 563 RGRAYPMHPHLTHLSSDLCRGVLEFAEGRPLGKSGLCWLKIHLANLYSGGVEKLSHDGRL 622
Query: 653 AFVENHLYEIFDSAENPINGSRWWLTAEDPFQCLAACINLSEALKSSSPHSVISHLPIHQ 712
AFVENHL EIFDSAENP+NG RWWLTAEDPFQCLAACINLSEALKS+SPH+VISHLPIHQ
Sbjct: 623 AFVENHLSEIFDSAENPVNGKRWWLTAEDPFQCLAACINLSEALKSASPHTVISHLPIHQ 682
Query: 713 DGSCNGLQHYAALGRNTLEAAAVNLVAGEKPADVYSEIAVRVHEIMKRDSNKDPSKHPQA 772
DGSCNGLQHYAALGR++ EAAAVNLVA EKP+DVYSEIA RVHEI++RDSNKDP+ +P A
Sbjct: 683 DGSCNGLQHYAALGRDSQEAAAVNLVAAEKPSDVYSEIATRVHEIIRRDSNKDPATNPHA 742
Query: 773 LLAKILIDQVDRKLVKQTVMTSVYGVTFVGAREQIKRRLEEKGHITDDRQLFAAACYAAK 832
LLAK+LID+VDRKLVKQTVMTSVYGVT+VGAREQIKRRLEEKGHITDDR LF+AACYAAK
Sbjct: 743 LLAKVLIDEVDRKLVKQTVMTSVYGVTYVGAREQIKRRLEEKGHITDDRVLFSAACYAAK 802
Query: 833 VTLTALGEIFEAARSIMGWLGDCAKVIASENQPVRWTTPLGLPVVQPYCKNERHLIRTSL 892
VTLTALGE+F+AAR IMGWLGDCAKVIASE+QPVRWTTPLGLPVVQPY K +RHLIRTSL
Sbjct: 803 VTLTALGELFQAARDIMGWLGDCAKVIASEDQPVRWTTPLGLPVVQPYYKTQRHLIRTSL 862
Query: 893 QVLALQREGNLVKIRKQRTAFPPNFVHSLDGSHMMMTAVACRDAGLHFAGL 943
QVLALQREG+ V++RKQRTAFPPNFVHSLDGSHMMMTAVACRDA L FAG+
Sbjct: 863 QVLALQREGSSVQVRKQRTAFPPNFVHSLDGSHMMMTAVACRDADLRFAGV 913
>gi|225445794|ref|XP_002274521.1| PREDICTED: DNA-directed RNA polymerase 3, chloroplastic [Vitis
vinifera]
Length = 979
Score = 1363 bits (3528), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 644/825 (78%), Positives = 736/825 (89%), Gaps = 11/825 (1%)
Query: 126 ENSTNHQLMCLEPRRRIFVQDPPWFSSIFLKGLYKR-------IKLQEYREMKKRKFNLL 178
++S+N Q+ PR IFVQDPPW SS +R +KL E+RE ++R + LL
Sbjct: 90 QDSSNIQVKESIPR--IFVQDPPWISSFLFHDWCERNRRTGQNVKL-EFRETERRNYGLL 146
Query: 179 RRRQVKQETEAWERMVDEYKELEAKMIEKRLAPNLPHIKGLFLGWFGPLSEAIEREQKMQ 238
RRRQVK ETEAWERMV+EY+E+E +M EK+LAPNLP++K LFLGWF PL EAI++EQ+ Q
Sbjct: 147 RRRQVKAETEAWERMVEEYREIEREMCEKKLAPNLPYVKALFLGWFEPLREAIDKEQRAQ 206
Query: 239 RTKKQKAAYAPHIELLPADKVAVIVMHKMMGLVMAGHEDRCVQVVQAAVHIGMAIEQEIR 298
RTKKQKAAYAPHIELLPADK+AVIVMHKMMGLVM GHE+ CV+VVQAAV IGMAIEQE+R
Sbjct: 207 RTKKQKAAYAPHIELLPADKMAVIVMHKMMGLVMMGHEEGCVRVVQAAVQIGMAIEQEVR 266
Query: 299 IHSFLEKTKNYKRKKIIADTEEVLSKEKELLRKRVNSLIKSKRVMEAQKLLKNEETKPWG 358
IHSFLEKTKN++R K + ++E L +EKE+LRKRV S I+ K+++E QKL+KNEE PWG
Sbjct: 267 IHSFLEKTKNFERHKTVGHSQEGL-REKEILRKRVKSFIRKKKIIEVQKLVKNEEITPWG 325
Query: 359 RDTQAKLGSRLVELLIETAYVQHPVNPADYSPPDVRPAFRHRFKTILKHPGQKTTKRYGV 418
RDTQAKLGSRL+ELL ETAYVQ PVN + PPDVRPAFRH FKT+ K GQK ++YGV
Sbjct: 326 RDTQAKLGSRLIELLTETAYVQTPVNQSADCPPDVRPAFRHTFKTVTKESGQKDWRKYGV 385
Query: 419 VECDPLVLEGLDRSAKHMLIPYVPMLVPPKKWKGYNKGGYLFLPSYVMRTHGSRKQQEAL 478
+ECDPLVL GLDR+AKHM+IPYVPML+PPKKWKGY+KGGYLFLPSYVMRTHGSRKQQ+A+
Sbjct: 386 IECDPLVLIGLDRTAKHMVIPYVPMLIPPKKWKGYDKGGYLFLPSYVMRTHGSRKQQDAV 445
Query: 479 KSVTGNCMKKVFEALDTLGSTKWRVNKQVLSVLESIWVSGGNIAGLVDRNDVLIPEKPLS 538
KSV ++KVFEALDTLG+TKWR+N++VLSV+ESIW GGN+ GLVDR +V +PEKP +
Sbjct: 446 KSVPRRQLQKVFEALDTLGNTKWRINRRVLSVVESIWARGGNLGGLVDRENVPLPEKPST 505
Query: 539 EDMTEVQKWKWSVRKAKKINQERHSQRCDTELKLSVARRMKDEEGFYYPHNLDFRGRAYP 598
ED+TE+Q WKW+ RKAKKINQERHS RCDTE+KLSVAR+MKDEEGFYYPHNLDFRGRAYP
Sbjct: 506 EDLTEIQNWKWNARKAKKINQERHSLRCDTEIKLSVARKMKDEEGFYYPHNLDFRGRAYP 565
Query: 599 MHPHLNHLSSDVCRGVLEFAEGRPLGKSGLRWLKIHLANLFSGGVEKLSHDGRLAFVENH 658
MHPHLNHLSSD+CRGVLEFAEGRPLGKSGLRWLKI LANL++GGVEKLS+DGRLAFV+NH
Sbjct: 566 MHPHLNHLSSDLCRGVLEFAEGRPLGKSGLRWLKIQLANLYAGGVEKLSYDGRLAFVDNH 625
Query: 659 LYEIFDSAENPINGSRWWLTAEDPFQCLAACINLSEALKSSSPHSVISHLPIHQDGSCNG 718
L ++FDSA+NP+NG+RWWLTAEDPFQCLAACINLSEAL+SSSPH+VISHLPIHQDGSCNG
Sbjct: 626 LDDVFDSADNPLNGNRWWLTAEDPFQCLAACINLSEALRSSSPHTVISHLPIHQDGSCNG 685
Query: 719 LQHYAALGRNTLEAAAVNLVAGEKPADVYSEIAVRVHEIMKRDSNKDPSKHPQALLAKIL 778
LQHYAALGRN+LEA+AVNLVAGEKPADVYSEIA RVHEIMKRDSNKDP+ P+ALLAK+L
Sbjct: 686 LQHYAALGRNSLEASAVNLVAGEKPADVYSEIAARVHEIMKRDSNKDPATDPKALLAKVL 745
Query: 779 IDQVDRKLVKQTVMTSVYGVTFVGAREQIKRRLEEKGHITDDRQLFAAACYAAKVTLTAL 838
I QVDRKLVKQTVMTSVYGVT++GAREQIKRRL EKG ITD+R LF AACYAAKVTL AL
Sbjct: 746 IGQVDRKLVKQTVMTSVYGVTYIGAREQIKRRLAEKGLITDERLLFTAACYAAKVTLAAL 805
Query: 839 GEIFEAARSIMGWLGDCAKVIASENQPVRWTTPLGLPVVQPYCKNERHLIRTSLQVLALQ 898
GEIF+AAR IM WLG+CAKVIASENQPV+WTTPLGLPV+QPYCK+ERHLIRTSLQVLALQ
Sbjct: 806 GEIFQAARDIMAWLGECAKVIASENQPVQWTTPLGLPVIQPYCKSERHLIRTSLQVLALQ 865
Query: 899 REGNLVKIRKQRTAFPPNFVHSLDGSHMMMTAVACRDAGLHFAGL 943
REG++V IRKQRTAFPPNFVHSLDGSHMMMTAVACRDAGL FAG+
Sbjct: 866 REGSVVVIRKQRTAFPPNFVHSLDGSHMMMTAVACRDAGLCFAGV 910
>gi|449506262|ref|XP_004162698.1| PREDICTED: DNA-directed RNA polymerase 3, chloroplastic-like
[Cucumis sativus]
Length = 975
Score = 1362 bits (3524), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 659/914 (72%), Positives = 763/914 (83%), Gaps = 35/914 (3%)
Query: 33 TKRDDGSSKILHFLHSCSSSSSSSSSFPVNLKSSSSKPTRLRPRPLQDSIQSNFMENIEN 92
TKR K S +S SS SFPVN S+S L +PL DS+ NF E ++N
Sbjct: 25 TKRWKCERKTHPSFTSTFNSPLSSVSFPVNFDSTSQS---LHLQPLADSVHENFTETLDN 81
Query: 93 SVDFHIPTCEQEQNFHQRVENTETCADLVIPRSENSTNHQLMCLEPRRRIFVQDPPWFSS 152
S++ IP E HQ I R E+S +RIF+QDPPW +S
Sbjct: 82 SMNLQIPISE----IHQ------------ITRGESS-----------KRIFIQDPPWIAS 114
Query: 153 IFLKGLYKRIKLQ---EYREMKKRKFNLLRRRQVKQETEAWERMVDEYKELEAKMIEKRL 209
+FLKGLYK ++ + E+ E++KRK+NLLRRRQ+K ETEAWE+MV+EYKELE +M EK+L
Sbjct: 115 LFLKGLYKCVQKEVKLEFMEIEKRKYNLLRRRQIKAETEAWEKMVEEYKELEREMCEKKL 174
Query: 210 APNLPHIKGLFLGWFGPLSEAIEREQKMQRTKKQKAAYAPHIELLPADKVAVIVMHKMMG 269
APNLP++K LFLGWF PL AIE EQK QR+KKQKAA+APHIELL ADK+AVIVM+KMMG
Sbjct: 175 APNLPYVKKLFLGWFEPLKNAIEEEQKTQRSKKQKAAFAPHIELLSADKMAVIVMYKMMG 234
Query: 270 LVMAGHEDRCVQVVQAAVHIGMAIEQEIRIHSFLEKTKNYKRKKIIADTEEVLSKEKELL 329
L+M +D CVQVVQAAV IG AIEQE+RI S LEK ++ +R K+ ADTE L+KEKE+L
Sbjct: 235 LLMMAAQDGCVQVVQAAVQIGGAIEQEVRIQSILEKARSNQRTKVRADTE-CLTKEKEVL 293
Query: 330 RKRVNSLIKSKRVMEAQKLLKNEETKPWGRDTQAKLGSRLVELLIETAYVQHPVNPADYS 389
RK+VN LI+ +++ E QKLLK EE K WGRDTQAKLGSRL+ELLIE+A++Q PV+ + S
Sbjct: 294 RKQVNGLIRRRKLKEVQKLLKKEEFKAWGRDTQAKLGSRLIELLIESAFIQPPVSQSADS 353
Query: 390 PPDVRPAFRHRFKTILKHPGQKTTKRYGVVECDPLVLEGLDRSAKHMLIPYVPMLVPPKK 449
PPD+RPAF H FK + K PGQ K+YGVVECDP+VL GLDR+AKHMLIPY+PMLVPPKK
Sbjct: 354 PPDIRPAFWHGFKPVAKTPGQNFVKKYGVVECDPIVLAGLDRTAKHMLIPYIPMLVPPKK 413
Query: 450 WKGYNKGGYLFLPSYVMRTHGSRKQQEALKSVTGNCMKKVFEALDTLGSTKWRVNKQVLS 509
WKGY+KGG+ FLPSYVMRTHGS +QQ+A+K+++G M+KVFEALD LGSTKWRVN+ VLS
Sbjct: 414 WKGYDKGGHFFLPSYVMRTHGSSRQQDAMKNISGKQMQKVFEALDMLGSTKWRVNRSVLS 473
Query: 510 VLESIWVSGGNIAGLVDRNDVLIPEKPLSEDMTEVQKWKWSVRKAKKINQERHSQRCDTE 569
V+ES+W GGN AGLVDR DV IPEKPL D+TE+Q+W+WS++KAKKINQE HSQRCD E
Sbjct: 474 VVESLWAQGGNTAGLVDRKDVPIPEKPLG-DLTEMQEWRWSMKKAKKINQELHSQRCDVE 532
Query: 570 LKLSVARRMKDEEGFYYPHNLDFRGRAYPMHPHLNHLSSDVCRGVLEFAEGRPLGKSGLR 629
LKLSVAR+MKDEEGFYYPHNLDFRGRAYPMHPHLNHLSSD+CRGVLEFAEGRPLGKSGL
Sbjct: 533 LKLSVARKMKDEEGFYYPHNLDFRGRAYPMHPHLNHLSSDLCRGVLEFAEGRPLGKSGLH 592
Query: 630 WLKIHLANLFSGGVEKLSHDGRLAFVENHLYEIFDSAENPINGSRWWLTAEDPFQCLAAC 689
WLKIHLANL++GGVEKLS+D RLAFV++HL IFDSA NP+NG RWWLTAEDPFQCLAAC
Sbjct: 593 WLKIHLANLYAGGVEKLSYDERLAFVDDHLDNIFDSASNPVNGDRWWLTAEDPFQCLAAC 652
Query: 690 INLSEALKSSSPHSVISHLPIHQDGSCNGLQHYAALGRNTLEAAAVNLVAGEKPADVYSE 749
+NLSEALKSS+PH+VIS+LPIHQDGSCNGLQHYAALGR+TLEAAAVNLVAGEKPADVYSE
Sbjct: 653 MNLSEALKSSAPHTVISYLPIHQDGSCNGLQHYAALGRDTLEAAAVNLVAGEKPADVYSE 712
Query: 750 IAVRVHEIMKRDSNKDPSKHPQALLAKILIDQVDRKLVKQTVMTSVYGVTFVGAREQIKR 809
IA RVH IM RD++KDP+ +P A LAK+LIDQVDRKLVKQTVMTSVYGVT++GAREQIKR
Sbjct: 713 IAARVHTIMIRDASKDPTTNPNASLAKLLIDQVDRKLVKQTVMTSVYGVTYIGAREQIKR 772
Query: 810 RLEEKGHITDDRQLFAAACYAAKVTLTALGEIFEAARSIMGWLGDCAKVIASENQPVRWT 869
RLEEKG I+DDR F A+CYAAKVTL+ALGEIFEAAR IMGWLGDCAKVIA +NQPVRWT
Sbjct: 773 RLEEKGLISDDRLRFRASCYAAKVTLSALGEIFEAARGIMGWLGDCAKVIAKDNQPVRWT 832
Query: 870 TPLGLPVVQPYCKNERHLIRTSLQVLALQREGNLVKIRKQRTAFPPNFVHSLDGSHMMMT 929
TPLGLPVVQPY K+ERHLIRTSLQVLALQREGNLV +RKQRTAFPPNFVHSLDGSHMM+T
Sbjct: 833 TPLGLPVVQPYYKSERHLIRTSLQVLALQREGNLVDVRKQRTAFPPNFVHSLDGSHMMLT 892
Query: 930 AVACRDAGLHFAGL 943
A+ACRDAGL FAG+
Sbjct: 893 ALACRDAGLRFAGV 906
>gi|449454095|ref|XP_004144791.1| PREDICTED: DNA-directed RNA polymerase 3, chloroplastic-like
[Cucumis sativus]
Length = 975
Score = 1360 bits (3519), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 658/914 (71%), Positives = 762/914 (83%), Gaps = 35/914 (3%)
Query: 33 TKRDDGSSKILHFLHSCSSSSSSSSSFPVNLKSSSSKPTRLRPRPLQDSIQSNFMENIEN 92
TKR K S +S SS SFPVN S+S L +PL DS+ NF E ++N
Sbjct: 25 TKRWKCERKTHTSFTSTFNSPLSSVSFPVNFDSTSQS---LHLQPLADSVHENFTETLDN 81
Query: 93 SVDFHIPTCEQEQNFHQRVENTETCADLVIPRSENSTNHQLMCLEPRRRIFVQDPPWFSS 152
S++ IP E HQ I R E+S +RIF+QDPPW +S
Sbjct: 82 SMNLQIPISE----IHQ------------ITRGESS-----------KRIFIQDPPWIAS 114
Query: 153 IFLKGLYKRIKLQ---EYREMKKRKFNLLRRRQVKQETEAWERMVDEYKELEAKMIEKRL 209
+FLKGLYK ++ + E+ E++KRK+NLLRRRQ+K ETEAWE+MV+EYKELE +M EK+L
Sbjct: 115 LFLKGLYKCVQKEVKLEFMEIEKRKYNLLRRRQIKAETEAWEKMVEEYKELEREMCEKKL 174
Query: 210 APNLPHIKGLFLGWFGPLSEAIEREQKMQRTKKQKAAYAPHIELLPADKVAVIVMHKMMG 269
APNLP++K LFLGWF PL AIE EQK QR+KKQKAA+APHIELL ADK+A IVM+KMMG
Sbjct: 175 APNLPYVKKLFLGWFEPLKNAIEEEQKTQRSKKQKAAFAPHIELLSADKMAGIVMYKMMG 234
Query: 270 LVMAGHEDRCVQVVQAAVHIGMAIEQEIRIHSFLEKTKNYKRKKIIADTEEVLSKEKELL 329
L+M +D CVQVVQAAV IG AIEQE+RI S LEK ++ +R K+ ADTE L+KEKE+L
Sbjct: 235 LLMMAAQDGCVQVVQAAVQIGGAIEQEVRIQSILEKARSNQRTKVRADTE-CLTKEKEVL 293
Query: 330 RKRVNSLIKSKRVMEAQKLLKNEETKPWGRDTQAKLGSRLVELLIETAYVQHPVNPADYS 389
RK+VN LI+ +++ E QKLLK EE K WGRDTQAKLGSRL+ELLIE+A++Q PV+ + S
Sbjct: 294 RKQVNGLIRRRKLKEVQKLLKKEEFKAWGRDTQAKLGSRLIELLIESAFIQPPVSQSADS 353
Query: 390 PPDVRPAFRHRFKTILKHPGQKTTKRYGVVECDPLVLEGLDRSAKHMLIPYVPMLVPPKK 449
PPD+RPAF H FK + K PGQ K+YGVVECDP+VL GLDR+AKHMLIPY+PMLVPPKK
Sbjct: 354 PPDIRPAFWHGFKPVAKTPGQNFVKKYGVVECDPIVLAGLDRTAKHMLIPYIPMLVPPKK 413
Query: 450 WKGYNKGGYLFLPSYVMRTHGSRKQQEALKSVTGNCMKKVFEALDTLGSTKWRVNKQVLS 509
WKGY+KGG+ FLPSYVMRTHGS +QQ+A+K+++G M+KVFEALD LGSTKWRVN+ VLS
Sbjct: 414 WKGYDKGGHFFLPSYVMRTHGSSRQQDAMKNISGKQMQKVFEALDMLGSTKWRVNRSVLS 473
Query: 510 VLESIWVSGGNIAGLVDRNDVLIPEKPLSEDMTEVQKWKWSVRKAKKINQERHSQRCDTE 569
V+ES+W GGN AGLVDR DV IPEKPL D+TE+Q+W+WS++KAKKINQE HSQRCD E
Sbjct: 474 VVESLWAQGGNTAGLVDRKDVPIPEKPLG-DLTEMQEWRWSMKKAKKINQELHSQRCDVE 532
Query: 570 LKLSVARRMKDEEGFYYPHNLDFRGRAYPMHPHLNHLSSDVCRGVLEFAEGRPLGKSGLR 629
LKLSVAR+MKDEEGFYYPHNLDFRGRAYPMHPHLNHLSSD+CRGVLEFAEGRPLGKSGL
Sbjct: 533 LKLSVARKMKDEEGFYYPHNLDFRGRAYPMHPHLNHLSSDLCRGVLEFAEGRPLGKSGLH 592
Query: 630 WLKIHLANLFSGGVEKLSHDGRLAFVENHLYEIFDSAENPINGSRWWLTAEDPFQCLAAC 689
WLKIHLANL++GGVEKLS+D RLAFV++HL IFDSA NP+NG RWWLTAEDPFQCLAAC
Sbjct: 593 WLKIHLANLYAGGVEKLSYDERLAFVDDHLDNIFDSASNPVNGDRWWLTAEDPFQCLAAC 652
Query: 690 INLSEALKSSSPHSVISHLPIHQDGSCNGLQHYAALGRNTLEAAAVNLVAGEKPADVYSE 749
+NLSEALKSS+PH+VIS+LPIHQDGSCNGLQHYAALGR+TLEAAAVNLVAGEKPADVYSE
Sbjct: 653 MNLSEALKSSAPHTVISYLPIHQDGSCNGLQHYAALGRDTLEAAAVNLVAGEKPADVYSE 712
Query: 750 IAVRVHEIMKRDSNKDPSKHPQALLAKILIDQVDRKLVKQTVMTSVYGVTFVGAREQIKR 809
IA RVH IM RD++KDP+ +P A LAK+LIDQVDRKLVKQTVMTSVYGVT++GAREQIKR
Sbjct: 713 IAARVHTIMIRDASKDPTTNPNASLAKLLIDQVDRKLVKQTVMTSVYGVTYIGAREQIKR 772
Query: 810 RLEEKGHITDDRQLFAAACYAAKVTLTALGEIFEAARSIMGWLGDCAKVIASENQPVRWT 869
RLEEKG I+DDR F A+CYAAKVTL+ALGEIFEAAR IMGWLGDCAKVIA +NQPVRWT
Sbjct: 773 RLEEKGLISDDRLRFRASCYAAKVTLSALGEIFEAARGIMGWLGDCAKVIAKDNQPVRWT 832
Query: 870 TPLGLPVVQPYCKNERHLIRTSLQVLALQREGNLVKIRKQRTAFPPNFVHSLDGSHMMMT 929
TPLGLPVVQPY K+ERHLIRTSLQVLALQREGNLV +RKQRTAFPPNFVHSLDGSHMM+T
Sbjct: 833 TPLGLPVVQPYYKSERHLIRTSLQVLALQREGNLVDVRKQRTAFPPNFVHSLDGSHMMLT 892
Query: 930 AVACRDAGLHFAGL 943
A+ACRDAGL FAG+
Sbjct: 893 ALACRDAGLRFAGV 906
>gi|297825331|ref|XP_002880548.1| PDE319/SCA3 [Arabidopsis lyrata subsp. lyrata]
gi|297326387|gb|EFH56807.1| PDE319/SCA3 [Arabidopsis lyrata subsp. lyrata]
Length = 990
Score = 1319 bits (3414), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 633/859 (73%), Positives = 729/859 (84%), Gaps = 13/859 (1%)
Query: 90 IENSVDFHIPTCEQEQNFHQRVENTETCADLVIPRSENSTNHQLMCLEPRRRIFVQDPPW 149
I NSV FH E +N T A L I EN L RRR+F+QDPPW
Sbjct: 71 ISNSVHFHGNLIESFENQDSSYAGTINGASL-IEELENPVERN--GLSGRRRLFMQDPPW 127
Query: 150 FSSIFLKGLYKRIKLQ---EYREMKKRKFNLLRRRQVKQETEAWERMVDEYKELEAKMIE 206
S++FLKGL K + E +++ KRKF+ LRRRQVK+ETEAWERMVDEY++LE +M E
Sbjct: 128 ISALFLKGLSKMVDQTLKIERKDIDKRKFDSLRRRQVKEETEAWERMVDEYRDLEKEMCE 187
Query: 207 KRLAPNLPHIKGLFLGWFGPLSEAIEREQKMQR--TKKQKAAYAPHIELLPADKVAVIVM 264
K LAPNLP++K +FLGWF PL + IEREQK+Q+ +KK +AAYAPHIELLPADK+AVIVM
Sbjct: 188 KNLAPNLPYVKHMFLGWFQPLKDVIEREQKLQKNKSKKVRAAYAPHIELLPADKMAVIVM 247
Query: 265 HKMMGLVMAGHEDRCVQVVQAAVHIGMAIEQEIRIHSFLEKTKNYKRKKIIADTEEVLSK 324
HKMMGLVM+GHED C+QVVQAAV IG+AIEQE+RIH+FL++T RK D++E L K
Sbjct: 248 HKMMGLVMSGHEDGCIQVVQAAVSIGIAIEQEVRIHNFLKRT----RKNNAGDSQEEL-K 302
Query: 325 EKELLRKRVNSLIKSKRVMEAQKLLKNEETKPWGRDTQAKLGSRLVELLIETAYVQHPVN 384
EK+LLRKRVNSLI+ KR+++A K++K E TKPWGR TQAKLGSRL+ELLIE AYVQ P+
Sbjct: 303 EKQLLRKRVNSLIRRKRIIDALKVVKTEGTKPWGRATQAKLGSRLLELLIEAAYVQPPLT 362
Query: 385 PADYSPPDVRPAFRHRFKTILKHPGQKTTKRYGVVECDPLVLEGLDRSAKHMLIPYVPML 444
+ S P+ RPAFRH+FKT+ K+PG K +RYGV+ECD L+L GLD+SAKHMLIPYVPML
Sbjct: 363 QSGDSIPEFRPAFRHKFKTVTKYPGSKMVRRYGVIECDSLLLAGLDKSAKHMLIPYVPML 422
Query: 445 VPPKKWKGYNKGGYLFLPSYVMRTHGSRKQQEALKSVTGNCMKKVFEALDTLGSTKWRVN 504
VPPK+WKGY+KGGYLFLPSY+MRTHGS+KQQ+AL+ ++ +VFEALDTLG+TKWRVN
Sbjct: 423 VPPKRWKGYDKGGYLFLPSYIMRTHGSKKQQDALRDISHKTAHRVFEALDTLGNTKWRVN 482
Query: 505 KQVLSVLESIWVSGGNIAGLVDRNDVLIPEKPLSEDMTEVQKWKWSVRKAKKINQERHSQ 564
+ +L V+E +W GGNIAGLV+R DV IPEKP SED E+Q WKWSVRKA KIN+ERHS
Sbjct: 483 RNILDVVERLWADGGNIAGLVNREDVPIPEKPSSEDPEEIQSWKWSVRKANKINRERHSL 542
Query: 565 RCDTELKLSVARRMKDEEGFYYPHNLDFRGRAYPMHPHLNHLSSDVCRGVLEFAEGRPLG 624
RCD ELKLSVAR+MKDEEGFYYPHNLDFRGRAYPMHPHLNHLSSD+CRG LEFAEGRPLG
Sbjct: 543 RCDVELKLSVARKMKDEEGFYYPHNLDFRGRAYPMHPHLNHLSSDLCRGTLEFAEGRPLG 602
Query: 625 KSGLRWLKIHLANLFSGGVEKLSHDGRLAFVENHLYEIFDSAENPINGSRWWLTAEDPFQ 684
KSGL WLKIHLANLF+GGVEKLSHD RLAFVENHL +I DSAENPI+G RWWL AEDPFQ
Sbjct: 603 KSGLHWLKIHLANLFAGGVEKLSHDARLAFVENHLDDIMDSAENPIHGKRWWLKAEDPFQ 662
Query: 685 CLAACINLSEALKSSSPHSVISHLPIHQDGSCNGLQHYAALGRNTLEAAAVNLVAGEKPA 744
CLAAC+ L++AL+S SP+SVISHLPIHQDGSCNGLQHYAALGR++ EAAAVNLVAGEKPA
Sbjct: 663 CLAACVILTQALRSPSPYSVISHLPIHQDGSCNGLQHYAALGRDSFEAAAVNLVAGEKPA 722
Query: 745 DVYSEIAVRVHEIMKRDSNKDPSKHPQALLAKILIDQVDRKLVKQTVMTSVYGVTFVGAR 804
DVYSEI+ RVHEIMK+DS+KDP +P A LAKILI QVDRKLVKQTVMTSVYGVT+VGAR
Sbjct: 723 DVYSEISRRVHEIMKKDSSKDPESNPTAALAKILITQVDRKLVKQTVMTSVYGVTYVGAR 782
Query: 805 EQIKRRLEEKGHITDDRQLFAAACYAAKVTLTALGEIFEAARSIMGWLGDCAKVIASENQ 864
EQIKRRLEEKG ITD+R LFAAACY+AKVTL ALGEIFEAAR+IM WLGDCAK+IAS+N
Sbjct: 783 EQIKRRLEEKGVITDERMLFAAACYSAKVTLAALGEIFEAARAIMSWLGDCAKIIASDNH 842
Query: 865 PVRWTTPLGLPVVQPYCKNERHLIRTSLQVLALQREGNLVKIRKQRTAFPPNFVHSLDGS 924
PVRW TPLGLPVVQPYC++ERHLIRTSLQVLALQREGN V +RKQRTAFPPNFVHSLDG+
Sbjct: 843 PVRWITPLGLPVVQPYCRSERHLIRTSLQVLALQREGNTVDVRKQRTAFPPNFVHSLDGT 902
Query: 925 HMMMTAVACRDAGLHFAGL 943
HMMMTAVACR+AGL+FAG+
Sbjct: 903 HMMMTAVACREAGLNFAGV 921
>gi|15224093|ref|NP_179989.1| DNA-directed RNA polymerase 3 [Arabidopsis thaliana]
gi|3914826|sp|O24600.1|RPOT3_ARATH RecName: Full=DNA-directed RNA polymerase 3, chloroplastic; Flags:
Precursor
gi|2330560|emb|CAA69972.1| chloroplast single-subunit DNA-dependent RNA polymerase
[Arabidopsis thaliana]
gi|2330564|emb|CAA69717.1| chloroplast single-subunit DNA-dependent RNA polymerase
[Arabidopsis thaliana]
gi|4115372|gb|AAD03373.1| chloroplast single subunit DNA-dependent RNA polymerase
[Arabidopsis thaliana]
gi|110739160|dbj|BAF01496.1| chloroplast single subunit DNA-dependent RNA polymerase
[Arabidopsis thaliana]
gi|330252437|gb|AEC07531.1| DNA-directed RNA polymerase 3 [Arabidopsis thaliana]
Length = 993
Score = 1317 bits (3409), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 634/859 (73%), Positives = 729/859 (84%), Gaps = 13/859 (1%)
Query: 90 IENSVDFHIPTCEQEQNFHQRVENTETCADLVIPRSENSTNHQLMCLEPRRRIFVQDPPW 149
I NSV FH E +N T A L I EN L RRR+F+QDPPW
Sbjct: 74 ISNSVHFHGNLIESFENQDSSYAGTIKGASL-IEELENPVERN--GLSGRRRLFMQDPPW 130
Query: 150 FSSIFLKGLYKRIKLQ---EYREMKKRKFNLLRRRQVKQETEAWERMVDEYKELEAKMIE 206
S++FLKGL K + E +++ KRKF+ LRRRQVK+ETEAWERMVDEY++LE +M E
Sbjct: 131 ISALFLKGLSKMVDQTLKIERKDIDKRKFDSLRRRQVKEETEAWERMVDEYRDLEKEMCE 190
Query: 207 KRLAPNLPHIKGLFLGWFGPLSEAIEREQKMQR--TKKQKAAYAPHIELLPADKVAVIVM 264
K LAPNLP++K +FLGWF PL + IEREQK+Q+ +KK +AAYAPHIELLPADK+AVIVM
Sbjct: 191 KNLAPNLPYVKHMFLGWFQPLKDVIEREQKLQKNKSKKVRAAYAPHIELLPADKMAVIVM 250
Query: 265 HKMMGLVMAGHEDRCVQVVQAAVHIGMAIEQEIRIHSFLEKTKNYKRKKIIADTEEVLSK 324
HKMMGLVM+GHED C+QVVQAAV IG+AIEQE+RIH+FL++T RK D++E L K
Sbjct: 251 HKMMGLVMSGHEDGCIQVVQAAVSIGIAIEQEVRIHNFLKRT----RKNNAGDSQEEL-K 305
Query: 325 EKELLRKRVNSLIKSKRVMEAQKLLKNEETKPWGRDTQAKLGSRLVELLIETAYVQHPVN 384
EK+LLRKRVNSLI+ KR+++A K++K+E TKPWGR TQAKLGSRL+ELLIE AYVQ P+
Sbjct: 306 EKQLLRKRVNSLIRRKRIIDALKVVKSEGTKPWGRATQAKLGSRLLELLIEAAYVQPPLT 365
Query: 385 PADYSPPDVRPAFRHRFKTILKHPGQKTTKRYGVVECDPLVLEGLDRSAKHMLIPYVPML 444
+ S P+ RPAFRHRFKT+ K+PG K +RYGV+ECD L+L GLD+SAKHMLIPYVPML
Sbjct: 366 QSGDSIPEFRPAFRHRFKTVTKYPGSKLVRRYGVIECDSLLLAGLDKSAKHMLIPYVPML 425
Query: 445 VPPKKWKGYNKGGYLFLPSYVMRTHGSRKQQEALKSVTGNCMKKVFEALDTLGSTKWRVN 504
VPPK+WKGY+KGGYLFLPSY+MRTHGS+KQQ+ALK ++ +VFEALDTLG+TKWRVN
Sbjct: 426 VPPKRWKGYDKGGYLFLPSYIMRTHGSKKQQDALKDISHKTAHRVFEALDTLGNTKWRVN 485
Query: 505 KQVLSVLESIWVSGGNIAGLVDRNDVLIPEKPLSEDMTEVQKWKWSVRKAKKINQERHSQ 564
+ +L V+E +W GGNIAGLV+R DV IPEKP SED E+Q WKWS RKA KIN+ERHS
Sbjct: 486 RNILDVVERLWADGGNIAGLVNREDVPIPEKPSSEDPEELQSWKWSARKANKINRERHSL 545
Query: 565 RCDTELKLSVARRMKDEEGFYYPHNLDFRGRAYPMHPHLNHLSSDVCRGVLEFAEGRPLG 624
RCD ELKLSVAR+MKDEEGFYYPHNLDFRGRAYPMHPHLNHLSSD+CRG LEFAEGRPLG
Sbjct: 546 RCDVELKLSVARKMKDEEGFYYPHNLDFRGRAYPMHPHLNHLSSDLCRGTLEFAEGRPLG 605
Query: 625 KSGLRWLKIHLANLFSGGVEKLSHDGRLAFVENHLYEIFDSAENPINGSRWWLTAEDPFQ 684
KSGL WLKIHLANL++GGVEKLSHD RLAFVENHL +I DSAENPI+G RWWL AEDPFQ
Sbjct: 606 KSGLHWLKIHLANLYAGGVEKLSHDARLAFVENHLDDIMDSAENPIHGKRWWLKAEDPFQ 665
Query: 685 CLAACINLSEALKSSSPHSVISHLPIHQDGSCNGLQHYAALGRNTLEAAAVNLVAGEKPA 744
CLAAC+ L++ALKS SP+SVISHLPIHQDGSCNGLQHYAALGR++ EAAAVNLVAGEKPA
Sbjct: 666 CLAACVILTQALKSPSPYSVISHLPIHQDGSCNGLQHYAALGRDSFEAAAVNLVAGEKPA 725
Query: 745 DVYSEIAVRVHEIMKRDSNKDPSKHPQALLAKILIDQVDRKLVKQTVMTSVYGVTFVGAR 804
DVYSEI+ RVHEIMK+DS+KDP +P A LAKILI QVDRKLVKQTVMTSVYGVT+VGAR
Sbjct: 726 DVYSEISRRVHEIMKKDSSKDPESNPTAALAKILITQVDRKLVKQTVMTSVYGVTYVGAR 785
Query: 805 EQIKRRLEEKGHITDDRQLFAAACYAAKVTLTALGEIFEAARSIMGWLGDCAKVIASENQ 864
EQIKRRLEEKG ITD+R LFAAACY+AKVTL ALGEIFEAAR+IM WLGDCAK+IAS+N
Sbjct: 786 EQIKRRLEEKGVITDERMLFAAACYSAKVTLAALGEIFEAARAIMSWLGDCAKIIASDNH 845
Query: 865 PVRWTTPLGLPVVQPYCKNERHLIRTSLQVLALQREGNLVKIRKQRTAFPPNFVHSLDGS 924
PVRW TPLGLPVVQPYC++ERHLIRTSLQVLALQREGN V +RKQRTAFPPNFVHSLDG+
Sbjct: 846 PVRWITPLGLPVVQPYCRSERHLIRTSLQVLALQREGNTVDVRKQRTAFPPNFVHSLDGT 905
Query: 925 HMMMTAVACRDAGLHFAGL 943
HMMMTAVACR+AGL+FAG+
Sbjct: 906 HMMMTAVACREAGLNFAGV 924
>gi|255574998|ref|XP_002528405.1| DNA-directed RNA polymerase 3B, chloroplast precursor, putative
[Ricinus communis]
gi|223532193|gb|EEF33998.1| DNA-directed RNA polymerase 3B, chloroplast precursor, putative
[Ricinus communis]
Length = 1000
Score = 1309 bits (3387), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 643/920 (69%), Positives = 749/920 (81%), Gaps = 64/920 (6%)
Query: 41 KILHFL-----HSCSSSSSSSSSFPVNLKSSSSKPTRLRP-RPLQDSIQSNFMEN-IENS 93
K LHFL HS ++S SSSSFP+ K P L P PL D+++ + +E+ +EN
Sbjct: 27 KNLHFLSVPTSHSLFTNSLSSSSFPLITKF----PRNLLPFHPLHDAVEEHLLEDLVENP 82
Query: 94 VDFHIPTCEQEQNFHQRVENTETCADLVIPRSENSTNHQLMCLEPRRRIFVQDPPWFSSI 153
+ H + ET L +P + N HQ++ E RR+F+QDPPW S++
Sbjct: 83 IGNH--------------QKLETLIKLDLPTNHN---HQVLPEESSRRVFIQDPPWISAL 125
Query: 154 FLKGLYK----RIKLQEYREMKKRKFNLLRRRQVKQETEAWERMVDEYKELEAKMIEKRL 209
F KGLYK +KL E+++++KRK+NLLRRRQ+++ETEAWERMV+EYK L +M E++L
Sbjct: 126 FFKGLYKIPNKEVKL-EFKDIEKRKYNLLRRRQIREETEAWERMVEEYKALVKEMCERKL 184
Query: 210 APNLPHIKGLFLGWFGPLSEAIEREQKMQRTKKQKAAYAPHIELLPADKVAVIVMHKMMG 269
APNLP++KGLFLGWF PL E I+ EQ +QR+KK KAA+APHIELLPADK+AVIVMHKM+G
Sbjct: 185 APNLPYVKGLFLGWFEPLKEGIKSEQNLQRSKKNKAAFAPHIELLPADKMAVIVMHKMVG 244
Query: 270 LVMAGHEDRCVQVVQAAVHIGMAIEQEIRIHSFLEKTKNYKRKKIIADTEEVLSKEKELL 329
L+M GHED CV +VQAAV IGMAIEQE+RIH+FLEKTKNY+RKK I+ +E L KEKE+L
Sbjct: 245 LLMVGHEDGCVPLVQAAVQIGMAIEQEVRIHNFLEKTKNYQRKKTISGAQESLGKEKEIL 304
Query: 330 RKRVNSLIKSKRVMEAQKLLKNEETKPWGRDTQAKLGSRLVELLIETAYVQHPVNPADYS 389
RKRVNSLI+ K+++E QKL+KNEE KPWGRDTQAKLGSRL+ELL ETA+VQ PVN +
Sbjct: 305 RKRVNSLIRRKKLIEVQKLVKNEEMKPWGRDTQAKLGSRLIELLTETAFVQPPVNQSADV 364
Query: 390 PPDVRPAFRHRFKTILKHPGQKTTKRYGVVECDPLVLEGLDRSAKHMLIPYVPMLVPPKK 449
PPDVRPAFRHRF+ + +PGQK K+YGV+EC+PLVL+GLD SAKHMLIPY PMLVPPKK
Sbjct: 365 PPDVRPAFRHRFRIVKNNPGQKIVKKYGVIECNPLVLKGLDGSAKHMLIPYFPMLVPPKK 424
Query: 450 WKGYNKGGYLFLPSYVMRTHGSRKQQEALKSVTGNCMKKVFEALDTLGSTKWRVNKQVLS 509
WKGYNKGG+ FLPSY+MRTHGSRKQQ+ALK+V N M+KVFEALDTLG+TKWRVN++VL
Sbjct: 425 WKGYNKGGHFFLPSYIMRTHGSRKQQDALKNVPRNHMQKVFEALDTLGNTKWRVNRRVLD 484
Query: 510 VLESIWVSGGNIAGLVDRND------VLIPEKPLSEDMTEVQKWKWSVRKAKKINQERHS 563
V+ESIW GGNIAGLVDR D L+P L + +WS RKAKK N+ERH
Sbjct: 485 VVESIWARGGNIAGLVDRKDAGCHQSALLPVLMLFMKTDRTSEVRWSARKAKKTNRERHL 544
Query: 564 QRCDTELKLSVARRMKDEEGFYYPHNLDFRGRAYPMHPHLNHLSSDVCRGVLEFAEGRPL 623
VAR++KDEEGFYYPHNLDFRGRAYPMHPHL HLSSD+CRG+LEFAEGRPL
Sbjct: 545 N--------DVARKLKDEEGFYYPHNLDFRGRAYPMHPHLTHLSSDLCRGILEFAEGRPL 596
Query: 624 GKSGLRWLKIHLANLFSGGVEKLSHDGRLAFVENHLYEIFDSAENPINGSRWWLTAEDPF 683
GKSGLRWLKIHLANL+SGGVEKLSHDGRLAFVE+HL +IFDSAENP+NG+RWWLTAEDPF
Sbjct: 597 GKSGLRWLKIHLANLYSGGVEKLSHDGRLAFVEDHLADIFDSAENPVNGNRWWLTAEDPF 656
Query: 684 QCLAACINLSEALKSSSPHSVISHLPIHQDGSCNGLQHYAALGRNTLEAAAVNLVAGEKP 743
QCLAACINLSEALKSSSPH+VISHLPIHQ EAAAVNLVAGEKP
Sbjct: 657 QCLAACINLSEALKSSSPHTVISHLPIHQP-----------------EAAAVNLVAGEKP 699
Query: 744 ADVYSEIAVRVHEIMKRDSNKDPSKHPQALLAKILIDQVDRKLVKQTVMTSVYGVTFVGA 803
ADVY+EIA RVHE+++RDSNKDP+ +P ALLAK+LIDQVDRKLVKQTVMTSVYGVT+VGA
Sbjct: 700 ADVYTEIAARVHELIERDSNKDPATNPNALLAKLLIDQVDRKLVKQTVMTSVYGVTYVGA 759
Query: 804 REQIKRRLEEKGHITDDRQLFAAACYAAKVTLTALGEIFEAARSIMGWLGDCAKVIASEN 863
REQIKRRLEEKG ITDDR LF+A+CY AKVTLTALGE+F+AAR IMGWLGDCAKVIASE+
Sbjct: 760 REQIKRRLEEKGQITDDRLLFSASCYTAKVTLTALGELFQAARDIMGWLGDCAKVIASED 819
Query: 864 QPVRWTTPLGLPVVQPYCKNERHLIRTSLQVLALQREGNLVKIRKQRTAFPPNFVHSLDG 923
QPV+WTTPLGLPVVQPY K+ERHLIRTSLQVLALQREG+ VK+RKQRTAFPPNFVHSLDG
Sbjct: 820 QPVQWTTPLGLPVVQPYYKSERHLIRTSLQVLALQREGSSVKVRKQRTAFPPNFVHSLDG 879
Query: 924 SHMMMTAVACRDAGLHFAGL 943
SHMMMTAVACRDA L FAG+
Sbjct: 880 SHMMMTAVACRDADLRFAGV 899
>gi|297743676|emb|CBI36559.3| unnamed protein product [Vitis vinifera]
Length = 808
Score = 1290 bits (3337), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 601/740 (81%), Positives = 679/740 (91%), Gaps = 1/740 (0%)
Query: 204 MIEKRLAPNLPHIKGLFLGWFGPLSEAIEREQKMQRTKKQKAAYAPHIELLPADKVAVIV 263
M EK+LAPNLP++K LFLGWF PL EAI++EQ+ QRTKKQKAAYAPHIELLPADK+AVIV
Sbjct: 1 MCEKKLAPNLPYVKALFLGWFEPLREAIDKEQRAQRTKKQKAAYAPHIELLPADKMAVIV 60
Query: 264 MHKMMGLVMAGHEDRCVQVVQAAVHIGMAIEQEIRIHSFLEKTKNYKRKKIIADTEEVLS 323
MHKMMGLVM GHE+ CV+VVQAAV IGMAIEQE+RIHSFLEKTKN++R K + ++E L
Sbjct: 61 MHKMMGLVMMGHEEGCVRVVQAAVQIGMAIEQEVRIHSFLEKTKNFERHKTVGHSQEGL- 119
Query: 324 KEKELLRKRVNSLIKSKRVMEAQKLLKNEETKPWGRDTQAKLGSRLVELLIETAYVQHPV 383
+EKE+LRKRV S I+ K+++E QKL+KNEE PWGRDTQAKLGSRL+ELL ETAYVQ PV
Sbjct: 120 REKEILRKRVKSFIRKKKIIEVQKLVKNEEITPWGRDTQAKLGSRLIELLTETAYVQTPV 179
Query: 384 NPADYSPPDVRPAFRHRFKTILKHPGQKTTKRYGVVECDPLVLEGLDRSAKHMLIPYVPM 443
N + PPDVRPAFRH FKT+ K GQK ++YGV+ECDPLVL GLDR+AKHM+IPYVPM
Sbjct: 180 NQSADCPPDVRPAFRHTFKTVTKESGQKDWRKYGVIECDPLVLIGLDRTAKHMVIPYVPM 239
Query: 444 LVPPKKWKGYNKGGYLFLPSYVMRTHGSRKQQEALKSVTGNCMKKVFEALDTLGSTKWRV 503
L+PPKKWKGY+KGGYLFLPSYVMRTHGSRKQQ+A+KSV ++KVFEALDTLG+TKWR+
Sbjct: 240 LIPPKKWKGYDKGGYLFLPSYVMRTHGSRKQQDAVKSVPRRQLQKVFEALDTLGNTKWRI 299
Query: 504 NKQVLSVLESIWVSGGNIAGLVDRNDVLIPEKPLSEDMTEVQKWKWSVRKAKKINQERHS 563
N++VLSV+ESIW GGN+ GLVDR +V +PEKP +ED+TE+Q WKW+ RKAKKINQERHS
Sbjct: 300 NRRVLSVVESIWARGGNLGGLVDRENVPLPEKPSTEDLTEIQNWKWNARKAKKINQERHS 359
Query: 564 QRCDTELKLSVARRMKDEEGFYYPHNLDFRGRAYPMHPHLNHLSSDVCRGVLEFAEGRPL 623
RCDTE+KLSVAR+MKDEEGFYYPHNLDFRGRAYPMHPHLNHLSSD+CRGVLEFAEGRPL
Sbjct: 360 LRCDTEIKLSVARKMKDEEGFYYPHNLDFRGRAYPMHPHLNHLSSDLCRGVLEFAEGRPL 419
Query: 624 GKSGLRWLKIHLANLFSGGVEKLSHDGRLAFVENHLYEIFDSAENPINGSRWWLTAEDPF 683
GKSGLRWLKI LANL++GGVEKLS+DGRLAFV+NHL ++FDSA+NP+NG+RWWLTAEDPF
Sbjct: 420 GKSGLRWLKIQLANLYAGGVEKLSYDGRLAFVDNHLDDVFDSADNPLNGNRWWLTAEDPF 479
Query: 684 QCLAACINLSEALKSSSPHSVISHLPIHQDGSCNGLQHYAALGRNTLEAAAVNLVAGEKP 743
QCLAACINLSEAL+SSSPH+VISHLPIHQDGSCNGLQHYAALGRN+LEA+AVNLVAGEKP
Sbjct: 480 QCLAACINLSEALRSSSPHTVISHLPIHQDGSCNGLQHYAALGRNSLEASAVNLVAGEKP 539
Query: 744 ADVYSEIAVRVHEIMKRDSNKDPSKHPQALLAKILIDQVDRKLVKQTVMTSVYGVTFVGA 803
ADVYSEIA RVHEIMKRDSNKDP+ P+ALLAK+LI QVDRKLVKQTVMTSVYGVT++GA
Sbjct: 540 ADVYSEIAARVHEIMKRDSNKDPATDPKALLAKVLIGQVDRKLVKQTVMTSVYGVTYIGA 599
Query: 804 REQIKRRLEEKGHITDDRQLFAAACYAAKVTLTALGEIFEAARSIMGWLGDCAKVIASEN 863
REQIKRRL EKG ITD+R LF AACYAAKVTL ALGEIF+AAR IM WLG+CAKVIASEN
Sbjct: 600 REQIKRRLAEKGLITDERLLFTAACYAAKVTLAALGEIFQAARDIMAWLGECAKVIASEN 659
Query: 864 QPVRWTTPLGLPVVQPYCKNERHLIRTSLQVLALQREGNLVKIRKQRTAFPPNFVHSLDG 923
QPV+WTTPLGLPV+QPYCK+ERHLIRTSLQVLALQREG++V IRKQRTAFPPNFVHSLDG
Sbjct: 660 QPVQWTTPLGLPVIQPYCKSERHLIRTSLQVLALQREGSVVVIRKQRTAFPPNFVHSLDG 719
Query: 924 SHMMMTAVACRDAGLHFAGL 943
SHMMMTAVACRDAGL FAG+
Sbjct: 720 SHMMMTAVACRDAGLCFAGV 739
>gi|62750825|emb|CAC80139.1| DNA-dependent RNA polymerase [Spinacia oleracea]
Length = 989
Score = 1269 bits (3283), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 584/806 (72%), Positives = 706/806 (87%), Gaps = 6/806 (0%)
Query: 141 RIFVQDPPWFSSIFLKGLYKR---IKLQEYREMKKRKFNLLRRRQVKQETEAWERMVDEY 197
RIF+QDPPW +++F+KGL ++L E++E+++ K+NLLRRRQ+K ETEAWE MV+EY
Sbjct: 118 RIFMQDPPWVNTLFMKGLVDSNTGLRL-EFKEIEREKYNLLRRRQIKAETEAWESMVEEY 176
Query: 198 KELEAKMIEKRLAPNLPHIKGLFLGWFGPLSEAIEREQKMQRTKKQKAAYAPHIELLPAD 257
+E +M +K+LAPNLP +K LFLGWF PL +AIE+EQK QR++KQKA Y HI++LPAD
Sbjct: 177 REFVREMRDKKLAPNLPQVKALFLGWFEPLKKAIEKEQKSQRSRKQKAIYGYHIDMLPAD 236
Query: 258 KVAVIVMHKMMGLVMAGHEDRCVQVVQAAVHIGMAIEQEIRIHSFLEKTKNYKRKKIIAD 317
K+AVIVMHKMM L+M G++ CV++VQAA+ IG AIEQEI+IHSFLEKTKN ++ +D
Sbjct: 237 KMAVIVMHKMMSLLMVGNDAGCVRLVQAALQIGTAIEQEIKIHSFLEKTKNIRKNA--SD 294
Query: 318 TEEVLSKEKELLRKRVNSLIKSKRVMEAQKLLKNEETKPWGRDTQAKLGSRLVELLIETA 377
E L KEKE+ R RV SLIK KR+ EA KL+ +E++K W +DTQAKLGSRL+ELLI+TA
Sbjct: 295 LPEDLLKEKEIQRNRVKSLIKRKRLFEAAKLVTSEDSKSWSQDTQAKLGSRLIELLIDTA 354
Query: 378 YVQHPVNPADYSPPDVRPAFRHRFKTILKHPGQKTTKRYGVVECDPLVLEGLDRSAKHML 437
Y+QHP + + +PPDVRPAFRH+FK + GQ+ KRYGV+ECDPLVL+G+DRSA++M+
Sbjct: 355 YIQHPTSQSADTPPDVRPAFRHKFKILNNELGQQVVKRYGVIECDPLVLKGIDRSARYMI 414
Query: 438 IPYVPMLVPPKKWKGYNKGGYLFLPSYVMRTHGSRKQQEALKSVTGNCMKKVFEALDTLG 497
IPYVPML+PPK WKGY+KGGYLFLPSYVMRTHGSRKQQ+A++ M+KVFEAL+TLG
Sbjct: 415 IPYVPMLIPPKNWKGYDKGGYLFLPSYVMRTHGSRKQQDAMRKTPPQQMQKVFEALNTLG 474
Query: 498 STKWRVNKQVLSVLESIWVSGGNIAGLVDRNDVLIPEKPLSEDMTEVQKWKWSVRKAKKI 557
TKWR+N++VL V+E++W SGGNI GLV+ +DV +PEKPL+ED E+ WKWSVRKAKKI
Sbjct: 475 HTKWRINRKVLGVVENLWASGGNIGGLVNCDDVPLPEKPLTEDPAEIDTWKWSVRKAKKI 534
Query: 558 NQERHSQRCDTELKLSVARRMKDEEGFYYPHNLDFRGRAYPMHPHLNHLSSDVCRGVLEF 617
N+ERH+ RCD ELK+SVA++MKDEEGFYYPHNLDFRGRAYPMHPHLNHLSSD+CRGVLEF
Sbjct: 535 NRERHALRCDVELKISVAQKMKDEEGFYYPHNLDFRGRAYPMHPHLNHLSSDLCRGVLEF 594
Query: 618 AEGRPLGKSGLRWLKIHLANLFSGGVEKLSHDGRLAFVENHLYEIFDSAENPINGSRWWL 677
A GRPLGK+GL WLKIHLAN+++GGV+KLS++ R AFVENHL E+FDSA NPING+RWWL
Sbjct: 595 ASGRPLGKTGLHWLKIHLANVYAGGVDKLSYEARAAFVENHLEEVFDSATNPINGNRWWL 654
Query: 678 TAEDPFQCLAACINLSEALKSSSPHSVISHLPIHQDGSCNGLQHYAALGRNTLEAAAVNL 737
+AEDPFQCLAACI+L+ AL SSSPHS IS+LPIHQDGSCNGLQHYAALGR++ EAAAVNL
Sbjct: 655 SAEDPFQCLAACIDLTGALNSSSPHSFISYLPIHQDGSCNGLQHYAALGRDSKEAAAVNL 714
Query: 738 VAGEKPADVYSEIAVRVHEIMKRDSNKDPSKHPQALLAKILIDQVDRKLVKQTVMTSVYG 797
VAGE+PADVYSEIAVRV EIM++DS KDP P A+LAK+L+DQVDRKLVKQTVMTSVYG
Sbjct: 715 VAGEEPADVYSEIAVRVREIMEKDSRKDPKTDPHAVLAKVLVDQVDRKLVKQTVMTSVYG 774
Query: 798 VTFVGAREQIKRRLEEKGHITDDRQLFAAACYAAKVTLTALGEIFEAARSIMGWLGDCAK 857
VTFVGAREQIKRRLEEKG ITDDR LF+AACY+AKVT++ALG++F+AAR IM WLGDCAK
Sbjct: 775 VTFVGAREQIKRRLEEKGVITDDRLLFSAACYSAKVTMSALGQLFQAARGIMDWLGDCAK 834
Query: 858 VIASENQPVRWTTPLGLPVVQPYCKNERHLIRTSLQVLALQREGNLVKIRKQRTAFPPNF 917
VIASENQPVRWTTPLGLPVVQPYCK++RHLI+TSLQVLALQ+EG ++++KQRTAFPPN+
Sbjct: 835 VIASENQPVRWTTPLGLPVVQPYCKSKRHLIKTSLQVLALQQEGEGIEVKKQRTAFPPNY 894
Query: 918 VHSLDGSHMMMTAVACRDAGLHFAGL 943
VHSLDG+HMMMTAVACRDAGL FAG+
Sbjct: 895 VHSLDGTHMMMTAVACRDAGLQFAGV 920
>gi|59800202|sp|P69242.1|RPOT3_NICSY RecName: Full=DNA-directed RNA polymerase 3, chloroplastic;
AltName: Full=NsRpoT-C; AltName: Full=T7
bacteriophage-type single subunit RNA polymerase 3;
Flags: Precursor
gi|59800203|sp|P69243.1|RPO3A_TOBAC RecName: Full=DNA-directed RNA polymerase 3A, chloroplastic;
AltName: Full=NictaRpoT3-syl; AltName: Full=T7
bacteriophage-type single subunit RNA polymerase 3A;
Flags: Precursor
gi|21425641|emb|CAC82576.3| phage-type RNA polymerase [Nicotiana sylvestris]
gi|21425679|emb|CAC95027.2| plastid RNA polymerase [Nicotiana tabacum]
gi|24475541|dbj|BAC22693.1| T7 bacteriophage-type single subunit RNA polymerase [Nicotiana
sylvestris]
gi|24475543|dbj|BAC22694.1| T7 bacteriophage-type single subunit RNA polymerase [Nicotiana
sylvestris]
Length = 977
Score = 1256 bits (3251), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 599/861 (69%), Positives = 717/861 (83%), Gaps = 20/861 (2%)
Query: 90 IENSVDFHIPTCEQEQNFHQRVENTETCADLVIPRSENSTNHQLMCLEPRRRIFVQDPPW 149
I N++ C + + N + A+ V+ + N +R+F+QDPPW
Sbjct: 61 INNNIQSQTTVCVSTDENLEELVNLQKIANGVLTKESN------------KRVFIQDPPW 108
Query: 150 FSSIFLKGLYKRIK------LQEYREMKKRKFNLLRRRQVKQETEAWERMVDEYKELEAK 203
SS+F+ L+ R K + ++R++ +LRRRQ+K ETEAWE+MV+EY+ELE +
Sbjct: 109 VSSLFMNSLFVRAKQVQGVRREFREIERRRRYAMLRRRQIKAETEAWEQMVEEYRELERE 168
Query: 204 MIEKRLAPNLPHIKGLFLGWFGPLSEAIEREQKMQRTKKQKAAYAPHIELLPADKVAVIV 263
M EK+LAPNLP++K L LGWF PL +AIE+EQ + T K +AA+APHI+ LPADK+AVIV
Sbjct: 169 MCEKKLAPNLPYVKKLLLGWFEPLRQAIEKEQNAETTVKHRAAFAPHIDSLPADKMAVIV 228
Query: 264 MHKMMGLVM-AGHEDRCVQVVQAAVHIGMAIEQEIRIHSFLEKTKNYKRKKIIADTEEVL 322
MHK+MGL+M G E+RCVQVVQAAV IGMA+E E+RIH+FLEKTK ++ A ++E +
Sbjct: 229 MHKLMGLLMMGGKEERCVQVVQAAVQIGMAVENEVRIHNFLEKTKKLQKHMTGAQSQEDM 288
Query: 323 SKEKELLRKRVNSLIKSKRVMEAQKLLKNEETKPWGRDTQAKLGSRLVELLIETAYVQHP 382
S+E +LRKRV SLIK RV+E +KL+K+EE + WGRDTQAKLG RL+ELL ETAYVQ P
Sbjct: 289 SRETMILRKRVKSLIKRNRVVEVRKLMKSEEPESWGRDTQAKLGCRLLELLTETAYVQPP 348
Query: 383 VNPADYSPPDVRPAFRHRFKTILKHPGQKTTKRYGVVECDPLVLEGLDRSAKHMLIPYVP 442
V+ + +PPD+RPAFRH F+ + PG+ K+YGV+ECDPLV+ G+DR+ K M+IPYVP
Sbjct: 349 VDQSADTPPDIRPAFRHVFRIATRDPGKSIVKKYGVIECDPLVVAGVDRTVKQMMIPYVP 408
Query: 443 MLVPPKKWKGYNKGGYLFLPSYVMRTHGSRKQQEALKSVTGNCMKKVFEALDTLGSTKWR 502
MLVPPKKW+GY+KGGYLFLPSY+MRTHGSR+QQ+A++SV M++V+EALDTLGSTKWR
Sbjct: 409 MLVPPKKWRGYDKGGYLFLPSYLMRTHGSRRQQDAVRSVPTKQMQQVYEALDTLGSTKWR 468
Query: 503 VNKQVLSVLESIWVSGGNIAGLVDRNDVLIPEKPLSEDMTEVQKWKWSVRKAKKINQERH 562
VNK++LSV+ESIW GGNIAGLVDR DV IPE S+D+ EV+KWKW VRK+KKINQE H
Sbjct: 469 VNKRILSVVESIWAGGGNIAGLVDRKDVPIPELH-SDDIMEVKKWKWRVRKSKKINQELH 527
Query: 563 SQRCDTELKLSVARRMKDEEGFYYPHNLDFRGRAYPMHPHLNHLSSDVCRGVLEFAEGRP 622
SQRCDTELKLSVAR++KDEEGFYYPHNLDFRGRAYPMHPHLNHLSSD+CRG+LEFAEGRP
Sbjct: 528 SQRCDTELKLSVARKLKDEEGFYYPHNLDFRGRAYPMHPHLNHLSSDLCRGILEFAEGRP 587
Query: 623 LGKSGLRWLKIHLANLFSGGVEKLSHDGRLAFVENHLYEIFDSAENPINGSRWWLTAEDP 682
LGKSGLRWLKIHLA+L++GG+EKL +D RLAFVENH+ +I DSA NP+NG+RWWL AEDP
Sbjct: 588 LGKSGLRWLKIHLASLYAGGIEKLCYDARLAFVENHIDDILDSANNPLNGNRWWLNAEDP 647
Query: 683 FQCLAACINLSEALKSSSPHSVISHLPIHQDGSCNGLQHYAALGRNTLEAAAVNLVAGEK 742
FQCLAACINLSEALKSSSPH+V SHLPIHQDGSCNGLQHYAALGR+++EAAAVNLVAG+K
Sbjct: 648 FQCLAACINLSEALKSSSPHTVFSHLPIHQDGSCNGLQHYAALGRDSMEAAAVNLVAGDK 707
Query: 743 PADVYSEIAVRVHEIMKRDSNKDPSKHPQALLAKILIDQVDRKLVKQTVMTSVYGVTFVG 802
PADVY+EIA+RV I++ DS KDP+ P ALLAK+LIDQVDRKLVKQTVMTSVYGVT+VG
Sbjct: 708 PADVYTEIALRVDHIIRGDSIKDPATDPNALLAKLLIDQVDRKLVKQTVMTSVYGVTYVG 767
Query: 803 AREQIKRRLEEKGHITDDRQLFAAACYAAKVTLTALGEIFEAARSIMGWLGDCAKVIASE 862
AREQIKRRLEEKG I DDR LF A+CYAAKVTL ALGE+F+AAR M WLGDCAKVIASE
Sbjct: 768 AREQIKRRLEEKGLIDDDRLLFTASCYAAKVTLAALGELFQAARGTMTWLGDCAKVIASE 827
Query: 863 NQPVRWTTPLGLPVVQPYCKNERHLIRTSLQVLALQREGNLVKIRKQRTAFPPNFVHSLD 922
NQPVRWTTPLGLPVVQPY K +RH+IRTSLQVLALQREG+ V++RKQRTAFPPNFVHSLD
Sbjct: 828 NQPVRWTTPLGLPVVQPYFKTQRHVIRTSLQVLALQREGDTVEVRKQRTAFPPNFVHSLD 887
Query: 923 GSHMMMTAVACRDAGLHFAGL 943
GSHMMMTAVACRDAGL FAG+
Sbjct: 888 GSHMMMTAVACRDAGLQFAGV 908
>gi|356562547|ref|XP_003549531.1| PREDICTED: DNA-directed RNA polymerase 3, chloroplastic-like
[Glycine max]
Length = 951
Score = 1252 bits (3239), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 594/814 (72%), Positives = 698/814 (85%), Gaps = 11/814 (1%)
Query: 131 HQLMCLEPRRRIFVQDPPWFSSIFLKGLYKRIKLQEYREMKKRKFNLLRRRQVKQETEAW 190
HQ +P +RIF+Q+ PW + L L + E ++K NLLRRRQ+K ETEA
Sbjct: 78 HQTEPPDPPQRIFIQNSPWILNDLL--------LNDIEE--EKKLNLLRRRQIKAETEAL 127
Query: 191 ERMVDEYKELEAKMIEKRLAPNLPHIKGLFLGWFGPLSEAIEREQKMQRTKKQKAAYAPH 250
E+MV+EY+ELE +M EK L PNLPH+K LFLGWF PL EAIE EQK +R+KK KAA+APH
Sbjct: 128 EKMVEEYRELEREMREKNLTPNLPHVKALFLGWFDPLKEAIEAEQKSKRSKKHKAAFAPH 187
Query: 251 IELLPADKVAVIVMHKMMGLVMAGHEDR-CVQVVQAAVHIGMAIEQEIRIHSFLEKTKNY 309
I+ LPA K+AVIVMHK+MGLV + CV +V AAV IGMA+EQE+RIH FLEKT+++
Sbjct: 188 IDSLPAAKLAVIVMHKVMGLVTQEYRRAGCVLLVDAAVQIGMAVEQEVRIHKFLEKTRSH 247
Query: 310 KRKKIIADTEEVLSKEKELLRKRVNSLIKSKRVMEAQKLLKNEETKPWGRDTQAKLGSRL 369
+ KK A E+ + +K+ LRK VN LIK +R+ + Q LLK +E+ PWGRDTQAKLGSRL
Sbjct: 248 QSKKTEAGDEDSMDNDKQKLRKHVNGLIKRRRLKQVQMLLKEKESGPWGRDTQAKLGSRL 307
Query: 370 VELLIETAYVQHPVNPADYSPPDVRPAFRHRFKTILKHPGQKTTKRYGVVECDPLVLEGL 429
+ELLIETA+V PVN + +PPD+RPAFRH+FK I K+P QK K YGV+ECDPLVL G+
Sbjct: 308 IELLIETAFVHSPVNQSADTPPDIRPAFRHKFKAISKNPEQKILKNYGVIECDPLVLAGM 367
Query: 430 DRSAKHMLIPYVPMLVPPKKWKGYNKGGYLFLPSYVMRTHGSRKQQEALKSVTGNCMKKV 489
D+S KHML+PY+PMLVPPKKWKGY KGG+LFLPSY+MRTHGS+KQQ+ +K+V M+KV
Sbjct: 368 DKSVKHMLMPYMPMLVPPKKWKGYEKGGHLFLPSYIMRTHGSKKQQDVMKNVERKQMQKV 427
Query: 490 FEALDTLGSTKWRVNKQVLSVLESIWVSGGNIAGLVDRNDVLIPEKPLSEDMTEVQKWKW 549
FEALDTLG+TKWRVN+++L+V+ES+W GGNIAGL+DR DV IPE+P D+ ++Q+WKW
Sbjct: 428 FEALDTLGNTKWRVNRRLLNVVESLWAGGGNIAGLIDRKDVPIPERPPLGDLKQIQEWKW 487
Query: 550 SVRKAKKINQERHSQRCDTELKLSVARRMKDEEGFYYPHNLDFRGRAYPMHPHLNHLSSD 609
SVRKA+KIN ERHS RCDTELKLSVA++MKDEEGFYYPHN+DFRGRAYPMH HLNHLS D
Sbjct: 488 SVRKAEKINLERHSLRCDTELKLSVAQKMKDEEGFYYPHNVDFRGRAYPMHSHLNHLSCD 547
Query: 610 VCRGVLEFAEGRPLGKSGLRWLKIHLANLFSGGVEKLSHDGRLAFVENHLYEIFDSAENP 669
+CRG+LEFAEGRPLG+SGL WLKIHLANL++GG+EKLS+DGRLAFVENHL++IFDSA+NP
Sbjct: 548 LCRGLLEFAEGRPLGESGLCWLKIHLANLYAGGIEKLSYDGRLAFVENHLHDIFDSADNP 607
Query: 670 INGSRWWLTAEDPFQCLAACINLSEALKSSSPHSVISHLPIHQDGSCNGLQHYAALGRNT 729
ING+RWWL A+DPFQCLAACINLSEAL+SSSP+SVI HLPIHQDGSCNGLQHYAALGR++
Sbjct: 608 INGNRWWLMADDPFQCLAACINLSEALRSSSPNSVILHLPIHQDGSCNGLQHYAALGRDS 667
Query: 730 LEAAAVNLVAGEKPADVYSEIAVRVHEIMKRDSNKDPSKHPQALLAKILIDQVDRKLVKQ 789
LEAAAVNLVA EKPADVYSEIAVRVH+IM++D KDP+ +P ALLAK+LIDQ+DRKLVKQ
Sbjct: 668 LEAAAVNLVASEKPADVYSEIAVRVHDIMRKDCIKDPAAYPNALLAKVLIDQIDRKLVKQ 727
Query: 790 TVMTSVYGVTFVGAREQIKRRLEEKGHITDDRQLFAAACYAAKVTLTALGEIFEAARSIM 849
TVMTSVYGVTFVGAREQIKRRLEEKG ITD++ LFAAACYAAKVTLTALGEIF AAR IM
Sbjct: 728 TVMTSVYGVTFVGAREQIKRRLEEKGLITDEKLLFAAACYAAKVTLTALGEIFGAARVIM 787
Query: 850 GWLGDCAKVIASENQPVRWTTPLGLPVVQPYCKNERHLIRTSLQVLALQREGNLVKIRKQ 909
GWLGDCAKVIA ENQPVRWTTPLGLPVVQPYCK ERHLI+TSLQ LAL+REGN V +KQ
Sbjct: 788 GWLGDCAKVIAFENQPVRWTTPLGLPVVQPYCKTERHLIKTSLQFLALRREGNAVDAKKQ 847
Query: 910 RTAFPPNFVHSLDGSHMMMTAVACRDAGLHFAGL 943
R+AFPPNFVHSLDGSHMMMTA+ACRDAGL FAG+
Sbjct: 848 RSAFPPNFVHSLDGSHMMMTALACRDAGLCFAGV 881
>gi|79602097|ref|NP_973525.2| DNA-directed RNA polymerase 3 [Arabidopsis thaliana]
gi|330252436|gb|AEC07530.1| DNA-directed RNA polymerase 3 [Arabidopsis thaliana]
Length = 895
Score = 1244 bits (3220), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 602/821 (73%), Positives = 692/821 (84%), Gaps = 13/821 (1%)
Query: 90 IENSVDFHIPTCEQEQNFHQRVENTETCADLVIPRSENSTNHQLMCLEPRRRIFVQDPPW 149
I NSV FH E +N T A L I EN L RRR+F+QDPPW
Sbjct: 74 ISNSVHFHGNLIESFENQDSSYAGTIKGASL-IEELENPVERN--GLSGRRRLFMQDPPW 130
Query: 150 FSSIFLKGLYKRIKLQ---EYREMKKRKFNLLRRRQVKQETEAWERMVDEYKELEAKMIE 206
S++FLKGL K + E +++ KRKF+ LRRRQVK+ETEAWERMVDEY++LE +M E
Sbjct: 131 ISALFLKGLSKMVDQTLKIERKDIDKRKFDSLRRRQVKEETEAWERMVDEYRDLEKEMCE 190
Query: 207 KRLAPNLPHIKGLFLGWFGPLSEAIEREQKMQR--TKKQKAAYAPHIELLPADKVAVIVM 264
K LAPNLP++K +FLGWF PL + IEREQK+Q+ +KK +AAYAPHIELLPADK+AVIVM
Sbjct: 191 KNLAPNLPYVKHMFLGWFQPLKDVIEREQKLQKNKSKKVRAAYAPHIELLPADKMAVIVM 250
Query: 265 HKMMGLVMAGHEDRCVQVVQAAVHIGMAIEQEIRIHSFLEKTKNYKRKKIIADTEEVLSK 324
HKMMGLVM+GHED C+QVVQAAV IG+AIEQE+RIH+FL++T RK D++E L K
Sbjct: 251 HKMMGLVMSGHEDGCIQVVQAAVSIGIAIEQEVRIHNFLKRT----RKNNAGDSQEEL-K 305
Query: 325 EKELLRKRVNSLIKSKRVMEAQKLLKNEETKPWGRDTQAKLGSRLVELLIETAYVQHPVN 384
EK+LLRKRVNSLI+ KR+++A K++K+E TKPWGR TQAKLGSRL+ELLIE AYVQ P+
Sbjct: 306 EKQLLRKRVNSLIRRKRIIDALKVVKSEGTKPWGRATQAKLGSRLLELLIEAAYVQPPLT 365
Query: 385 PADYSPPDVRPAFRHRFKTILKHPGQKTTKRYGVVECDPLVLEGLDRSAKHMLIPYVPML 444
+ S P+ RPAFRHRFKT+ K+PG K +RYGV+ECD L+L GLD+SAKHMLIPYVPML
Sbjct: 366 QSGDSIPEFRPAFRHRFKTVTKYPGSKLVRRYGVIECDSLLLAGLDKSAKHMLIPYVPML 425
Query: 445 VPPKKWKGYNKGGYLFLPSYVMRTHGSRKQQEALKSVTGNCMKKVFEALDTLGSTKWRVN 504
VPPK+WKGY+KGGYLFLPSY+MRTHGS+KQQ+ALK ++ +VFEALDTLG+TKWRVN
Sbjct: 426 VPPKRWKGYDKGGYLFLPSYIMRTHGSKKQQDALKDISHKTAHRVFEALDTLGNTKWRVN 485
Query: 505 KQVLSVLESIWVSGGNIAGLVDRNDVLIPEKPLSEDMTEVQKWKWSVRKAKKINQERHSQ 564
+ +L V+E +W GGNIAGLV+R DV IPEKP SED E+Q WKWS RKA KIN+ERHS
Sbjct: 486 RNILDVVERLWADGGNIAGLVNREDVPIPEKPSSEDPEELQSWKWSARKANKINRERHSL 545
Query: 565 RCDTELKLSVARRMKDEEGFYYPHNLDFRGRAYPMHPHLNHLSSDVCRGVLEFAEGRPLG 624
RCD ELKLSVAR+MKDEEGFYYPHNLDFRGRAYPMHPHLNHLSSD+CRG LEFAEGRPLG
Sbjct: 546 RCDVELKLSVARKMKDEEGFYYPHNLDFRGRAYPMHPHLNHLSSDLCRGTLEFAEGRPLG 605
Query: 625 KSGLRWLKIHLANLFSGGVEKLSHDGRLAFVENHLYEIFDSAENPINGSRWWLTAEDPFQ 684
KSGL WLKIHLANL++GGVEKLSHD RLAFVENHL +I DSAENPI+G RWWL AEDPFQ
Sbjct: 606 KSGLHWLKIHLANLYAGGVEKLSHDARLAFVENHLDDIMDSAENPIHGKRWWLKAEDPFQ 665
Query: 685 CLAACINLSEALKSSSPHSVISHLPIHQDGSCNGLQHYAALGRNTLEAAAVNLVAGEKPA 744
CLAAC+ L++ALKS SP+SVISHLPIHQDGSCNGLQHYAALGR++ EAAAVNLVAGEKPA
Sbjct: 666 CLAACVILTQALKSPSPYSVISHLPIHQDGSCNGLQHYAALGRDSFEAAAVNLVAGEKPA 725
Query: 745 DVYSEIAVRVHEIMKRDSNKDPSKHPQALLAKILIDQVDRKLVKQTVMTSVYGVTFVGAR 804
DVYSEI+ RVHEIMK+DS+KDP +P A LAKILI QVDRKLVKQTVMTSVYGVT+VGAR
Sbjct: 726 DVYSEISRRVHEIMKKDSSKDPESNPTAALAKILITQVDRKLVKQTVMTSVYGVTYVGAR 785
Query: 805 EQIKRRLEEKGHITDDRQLFAAACYAAKVTLTALGEIFEAARSIMGWLGDCAKVIASENQ 864
EQIKRRLEEKG ITD+R LFAAACY+AKVTL ALGEIFEAAR+IM WLGDCAK+IAS+N
Sbjct: 786 EQIKRRLEEKGVITDERMLFAAACYSAKVTLAALGEIFEAARAIMSWLGDCAKIIASDNH 845
Query: 865 PVRWTTPLGLPVVQPYCKNERHLIRTSLQVLALQREGNLVK 905
PVRW TPLGLPVVQPYC++ERHLIRTSLQVLALQREGN VK
Sbjct: 846 PVRWITPLGLPVVQPYCRSERHLIRTSLQVLALQREGNTVK 886
>gi|356514404|ref|XP_003525896.1| PREDICTED: DNA-directed RNA polymerase 3, chloroplastic-like
[Glycine max]
Length = 973
Score = 1239 bits (3206), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 581/805 (72%), Positives = 688/805 (85%), Gaps = 6/805 (0%)
Query: 141 RIFVQDPPWFSSIFLKGLYKRIKLQEYREMKKRKFNLLRRRQVKQETEAWERMVDEYKEL 200
RIFVQ+PPW +FLKGL + + ++ ++ K+NLLRRRQ++ ETEAWE+MV+EY+EL
Sbjct: 104 RIFVQEPPW---LFLKGLLMQEEEMRQKDKEREKYNLLRRRQIEAETEAWEKMVEEYREL 160
Query: 201 EAKMIEKRLAPNLPHIKGLFLGWFGPLSEAIEREQKMQRT--KKQKAAYAPHIELLPADK 258
E +M EK LAPNLPH+K L LGWF P A+E EQ R KKQ+ + APH++ LPADK
Sbjct: 161 EREMREKMLAPNLPHVKSLLLGWFEPFRAAVEAEQTAHRARPKKQQDSIAPHVDDLPADK 220
Query: 259 VAVIVMHKMMGLVMAGHEDRCVQVVQAAVHIGMAIEQEIRIHSFLEKTKNYKRKKIIADT 318
VAVIVMHKMM +VM +E+ CVQ+V AAVHIGMA+EQE+RIH F+E K+ + KK D
Sbjct: 221 VAVIVMHKMMAMVME-NEEGCVQLVHAAVHIGMALEQEVRIHKFVEGNKSSQSKKTEGDA 279
Query: 319 EEVLSKEKELLRKRVNSLIKSKRVMEAQKLLKNEETKPWGRDTQAKLGSRLVELLIETAY 378
E+ L +KE R +NSL+K R+ E Q +L+ EE PW RDTQAKLGSRLVELLI+TAY
Sbjct: 280 EDSLDSDKEKQRNYLNSLLKKNRLREVQMILRKEECSPWSRDTQAKLGSRLVELLIDTAY 339
Query: 379 VQHPVNPADYSPPDVRPAFRHRFKTILKHPGQKTTKRYGVVECDPLVLEGLDRSAKHMLI 438
V PVN + +PPD+RPAFRH FK + HPGQK +K+YG+++CDPLVL GL++ AKHMLI
Sbjct: 340 VHSPVNQSADTPPDIRPAFRHGFKAVPWHPGQKFSKKYGIIQCDPLVLVGLEKCAKHMLI 399
Query: 439 PYVPMLVPPKKWKGYNKGGYLFLPSYVMRTHGSRKQQEALKSVTGNCMKKVFEALDTLGS 498
PY+PML+PPKKWKGY+KGG+LFLPSY+MRTHGS+KQQ+ +K+V G M+KVFEALD LG+
Sbjct: 400 PYMPMLIPPKKWKGYDKGGHLFLPSYIMRTHGSKKQQDVMKNVDGAQMQKVFEALDILGN 459
Query: 499 TKWRVNKQVLSVLESIWVSGGNIAGLVDRNDVLIPEKPLSEDMTEVQKWKWSVRKAKKIN 558
TKWRVN++VL V+ESIW GGNIAGLVD DV P+KPL ED+ +Q+WK +VRKAKKIN
Sbjct: 460 TKWRVNRRVLGVVESIWAGGGNIAGLVDCKDVPKPDKPLVEDLKLIQEWKCNVRKAKKIN 519
Query: 559 QERHSQRCDTELKLSVARRMKDEEGFYYPHNLDFRGRAYPMHPHLNHLSSDVCRGVLEFA 618
ERHS RCDTELKLSVAR+MKDEEGFYYPHNLDFRGRAYPMHPHLNHL SD+CRG+LEFA
Sbjct: 520 LERHSLRCDTELKLSVARKMKDEEGFYYPHNLDFRGRAYPMHPHLNHLGSDLCRGLLEFA 579
Query: 619 EGRPLGKSGLRWLKIHLANLFSGGVEKLSHDGRLAFVENHLYEIFDSAENPINGSRWWLT 678
EGRPLGKSGLRWLKIHLANL++GG+EK S+DGRL F+E+H+++IFDSA++PING+RWWLT
Sbjct: 580 EGRPLGKSGLRWLKIHLANLYAGGIEKQSYDGRLGFIEDHIHDIFDSADHPINGNRWWLT 639
Query: 679 AEDPFQCLAACINLSEALKSSSPHSVISHLPIHQDGSCNGLQHYAALGRNTLEAAAVNLV 738
AEDPFQCLAACINLSEAL+SSSP+S ISHLPIHQDGSCNGLQHYAALGR+ LEAAAVNLV
Sbjct: 640 AEDPFQCLAACINLSEALRSSSPNSFISHLPIHQDGSCNGLQHYAALGRDDLEAAAVNLV 699
Query: 739 AGEKPADVYSEIAVRVHEIMKRDSNKDPSKHPQALLAKILIDQVDRKLVKQTVMTSVYGV 798
A EKPADVY+EIAVRV++IM++DSNKDP P ALLAK+LIDQ+DRKLVKQTVMTSVYGV
Sbjct: 700 AKEKPADVYTEIAVRVYDIMRQDSNKDPDTFPNALLAKVLIDQIDRKLVKQTVMTSVYGV 759
Query: 799 TFVGAREQIKRRLEEKGHITDDRQLFAAACYAAKVTLTALGEIFEAARSIMGWLGDCAKV 858
T++GAREQIKRRL EKG +TDDR L+AA+CYAAKVTL ALGE+FEAAR IMGWLGDCAKV
Sbjct: 760 TYIGAREQIKRRLGEKGFVTDDRLLYAASCYAAKVTLAALGEVFEAARGIMGWLGDCAKV 819
Query: 859 IASENQPVRWTTPLGLPVVQPYCKNERHLIRTSLQVLALQREGNLVKIRKQRTAFPPNFV 918
IA ENQ V WTTPLGLPVVQPYCK ER+ IRTSLQ+LALQREG+ V ++KQR+AFPPNFV
Sbjct: 820 IACENQAVCWTTPLGLPVVQPYCKTERYQIRTSLQLLALQREGSAVSVKKQRSAFPPNFV 879
Query: 919 HSLDGSHMMMTAVACRDAGLHFAGL 943
HSLD SHMMMTA+AC DAGL FAG+
Sbjct: 880 HSLDSSHMMMTALACNDAGLCFAGV 904
>gi|356510622|ref|XP_003524036.1| PREDICTED: DNA-directed RNA polymerase 3, chloroplastic-like
[Glycine max]
Length = 1043
Score = 1232 bits (3188), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 579/805 (71%), Positives = 684/805 (84%), Gaps = 6/805 (0%)
Query: 141 RIFVQDPPWFSSIFLKGLYKRIKLQEYREMKKRKFNLLRRRQVKQETEAWERMVDEYKEL 200
RIFVQ+PPW +FLKGL + + + ++ K+NLLRRRQ++ ETEAWERMV+EY+EL
Sbjct: 174 RIFVQEPPW---LFLKGLLMQEEEMRQKGKEREKYNLLRRRQIEAETEAWERMVEEYREL 230
Query: 201 EAKMIEKRLAPNLPHIKGLFLGWFGPLSEAIEREQKMQ--RTKKQKAAYAPHIELLPADK 258
E +M EK LAPNLPH+K L LGWF P A+E EQ R KKQ+ + APH++ LPADK
Sbjct: 231 EREMREKMLAPNLPHVKALLLGWFEPFRAAVEAEQTAHHARPKKQQDSIAPHVDDLPADK 290
Query: 259 VAVIVMHKMMGLVMAGHEDRCVQVVQAAVHIGMAIEQEIRIHSFLEKTKNYKRKKIIADT 318
VAVIVMHKMM +VM E+ CVQ+V AA+HIG+A+EQE+RIH F+E K+ + KK D
Sbjct: 291 VAVIVMHKMMAMVMES-EEGCVQLVHAAIHIGLALEQEVRIHKFIEGNKSNRSKKTEGDA 349
Query: 319 EEVLSKEKELLRKRVNSLIKSKRVMEAQKLLKNEETKPWGRDTQAKLGSRLVELLIETAY 378
E+ L +KE R +NSL+K R+ E Q +L+ EE PW +DTQAKLGSRL+ELLI+TAY
Sbjct: 350 EDSLDSDKEKQRNYLNSLLKKNRLREVQMILRKEECSPWSQDTQAKLGSRLIELLIDTAY 409
Query: 379 VQHPVNPADYSPPDVRPAFRHRFKTILKHPGQKTTKRYGVVECDPLVLEGLDRSAKHMLI 438
V PVN + +PPD+RPAFRH FK + HPGQK +K+YGV++CDPLVL GL++ AKHMLI
Sbjct: 410 VHSPVNQSADTPPDIRPAFRHGFKAVPWHPGQKFSKKYGVIQCDPLVLVGLEKCAKHMLI 469
Query: 439 PYVPMLVPPKKWKGYNKGGYLFLPSYVMRTHGSRKQQEALKSVTGNCMKKVFEALDTLGS 498
PY+PML+PPKKWKGY+KGG+LFLPSY+MRTHGSRKQQ+ +K+V G M+KVFE LD LG+
Sbjct: 470 PYMPMLIPPKKWKGYDKGGHLFLPSYIMRTHGSRKQQDVMKNVNGAQMQKVFETLDILGN 529
Query: 499 TKWRVNKQVLSVLESIWVSGGNIAGLVDRNDVLIPEKPLSEDMTEVQKWKWSVRKAKKIN 558
TKWRVN+++L V+ESIW GGNIAGLVD DV P+KP ED+ +Q+WK SVRKAKKIN
Sbjct: 530 TKWRVNRRMLGVVESIWAGGGNIAGLVDCKDVPKPDKPPVEDLKLIQEWKCSVRKAKKIN 589
Query: 559 QERHSQRCDTELKLSVARRMKDEEGFYYPHNLDFRGRAYPMHPHLNHLSSDVCRGVLEFA 618
ERHS RCDTELKLSVAR+MKDEEGFYYPHNLDFRGRAYPMHPHLNHL SD+CRG+LEFA
Sbjct: 590 LERHSLRCDTELKLSVARKMKDEEGFYYPHNLDFRGRAYPMHPHLNHLGSDLCRGLLEFA 649
Query: 619 EGRPLGKSGLRWLKIHLANLFSGGVEKLSHDGRLAFVENHLYEIFDSAENPINGSRWWLT 678
EGRPLGKSGLRWLKIHLANL++GG+EK S+DGRL F+E+H+++IFDSA++PING+RWWLT
Sbjct: 650 EGRPLGKSGLRWLKIHLANLYAGGIEKHSYDGRLGFIEDHIHDIFDSADHPINGNRWWLT 709
Query: 679 AEDPFQCLAACINLSEALKSSSPHSVISHLPIHQDGSCNGLQHYAALGRNTLEAAAVNLV 738
AEDPFQCLAACINLSEAL+SSSP+S ISHLPIHQDGSCNGLQHYAALGR+ LEAAAVNLV
Sbjct: 710 AEDPFQCLAACINLSEALRSSSPNSFISHLPIHQDGSCNGLQHYAALGRDNLEAAAVNLV 769
Query: 739 AGEKPADVYSEIAVRVHEIMKRDSNKDPSKHPQALLAKILIDQVDRKLVKQTVMTSVYGV 798
A EKPADVY+EIAVRV++IM+RDSNKDP P ALLAK+L+ Q+DRKLVKQTVMTSVYGV
Sbjct: 770 AKEKPADVYTEIAVRVYDIMRRDSNKDPDTFPNALLAKVLLGQIDRKLVKQTVMTSVYGV 829
Query: 799 TFVGAREQIKRRLEEKGHITDDRQLFAAACYAAKVTLTALGEIFEAARSIMGWLGDCAKV 858
T++GAREQIKRRL EKG ITDDR L+AA+CYAAKVTL ALGE+FEAAR IMGWLGDCAKV
Sbjct: 830 TYIGAREQIKRRLGEKGLITDDRLLYAASCYAAKVTLAALGEVFEAARGIMGWLGDCAKV 889
Query: 859 IASENQPVRWTTPLGLPVVQPYCKNERHLIRTSLQVLALQREGNLVKIRKQRTAFPPNFV 918
IA ENQ VRWTTPLGLPVVQPYCK ER+ IRTSLQ+LALQREG+ V ++KQR+AFPPNFV
Sbjct: 890 IACENQAVRWTTPLGLPVVQPYCKTERYQIRTSLQLLALQREGSAVSVKKQRSAFPPNFV 949
Query: 919 HSLDGSHMMMTAVACRDAGLHFAGL 943
HSLD SHMMMTA+AC DAGL FAG+
Sbjct: 950 HSLDSSHMMMTALACNDAGLCFAGV 974
>gi|88933967|sp|Q8L6J1.2|RPO3B_TOBAC RecName: Full=DNA-directed RNA polymerase 3B, chloroplastic;
AltName: Full=NictaRpoT3-tom; AltName: Full=T7
bacteriophage-type single subunit RNA polymerase 3B;
Flags: Precursor
gi|21425667|emb|CAC95021.2| chloroplast RNA polymerase [Nicotiana tabacum]
Length = 977
Score = 1231 bits (3186), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 594/814 (72%), Positives = 703/814 (86%), Gaps = 7/814 (0%)
Query: 137 EPRRRIFVQDPPWFSSIFLKGLYKRIK------LQEYREMKKRKFNLLRRRQVKQETEAW 190
E +R+F+QDPPW SS+F+ L+ R K + ++R++ +LRRRQ+K ETEAW
Sbjct: 95 ESNKRVFIQDPPWVSSLFMNSLFVRAKQVQGVRREFREIERRRRYAMLRRRQIKAETEAW 154
Query: 191 ERMVDEYKELEAKMIEKRLAPNLPHIKGLFLGWFGPLSEAIEREQKMQRTKKQKAAYAPH 250
E+MV+EY+ELE +M EK+LAPNLP++K L LGWF PL +AIE+EQ + T K +AA+APH
Sbjct: 155 EQMVEEYRELEREMCEKKLAPNLPYVKKLLLGWFEPLRQAIEKEQNAETTVKHRAAFAPH 214
Query: 251 IELLPADKVAVIVMHKMMGLVM-AGHEDRCVQVVQAAVHIGMAIEQEIRIHSFLEKTKNY 309
I+ LPADK+AVIVMHK+MGL+M G E+RCVQVVQAAV IGMA+E E+RIH+FLEKTK
Sbjct: 215 IDSLPADKMAVIVMHKLMGLLMMGGKEERCVQVVQAAVQIGMAVENEVRIHNFLEKTKKL 274
Query: 310 KRKKIIADTEEVLSKEKELLRKRVNSLIKSKRVMEAQKLLKNEETKPWGRDTQAKLGSRL 369
++ A ++E +SKE +LRKRV SLIK RV+E +KL+K+EE + WGRDTQAKLG RL
Sbjct: 275 QKHMTGAQSQEDMSKETMILRKRVKSLIKRNRVVEVRKLMKSEEPESWGRDTQAKLGCRL 334
Query: 370 VELLIETAYVQHPVNPADYSPPDVRPAFRHRFKTILKHPGQKTTKRYGVVECDPLVLEGL 429
+ELL ETAYVQ PV+ + +PPD+RPAFRH FK + PG+ K+YGV+ECDPLV+ G+
Sbjct: 335 LELLTETAYVQRPVDQSADTPPDIRPAFRHVFKIATRDPGKNIVKKYGVIECDPLVVAGV 394
Query: 430 DRSAKHMLIPYVPMLVPPKKWKGYNKGGYLFLPSYVMRTHGSRKQQEALKSVTGNCMKKV 489
DR+ K M+IPYVPMLVPPKKW+GY+KGGYLFLPSY+MRTHGSR+QQ+A++ V M++V
Sbjct: 395 DRTVKQMMIPYVPMLVPPKKWRGYDKGGYLFLPSYLMRTHGSRRQQDAVRGVPTKQMQQV 454
Query: 490 FEALDTLGSTKWRVNKQVLSVLESIWVSGGNIAGLVDRNDVLIPEKPLSEDMTEVQKWKW 549
+EALDTLGSTKWRVNK++L+V+ESIW GGNIAGLVDR DV IPE S+D+ EV+KWKW
Sbjct: 455 YEALDTLGSTKWRVNKRILNVVESIWAGGGNIAGLVDRKDVPIPELSNSDDIMEVKKWKW 514
Query: 550 SVRKAKKINQERHSQRCDTELKLSVARRMKDEEGFYYPHNLDFRGRAYPMHPHLNHLSSD 609
VRK+KKINQE HSQRCDTELKLSVAR++KDEEGFYYPHNLDFRGRAYPMHPHLNHLSSD
Sbjct: 515 KVRKSKKINQELHSQRCDTELKLSVARKLKDEEGFYYPHNLDFRGRAYPMHPHLNHLSSD 574
Query: 610 VCRGVLEFAEGRPLGKSGLRWLKIHLANLFSGGVEKLSHDGRLAFVENHLYEIFDSAENP 669
+CRG+LEFAEGRPLGKSGLRWLKIHLA+L++GGVEKL +D RLAFVENH+++I DSA NP
Sbjct: 575 LCRGILEFAEGRPLGKSGLRWLKIHLASLYAGGVEKLCYDARLAFVENHIHDILDSANNP 634
Query: 670 INGSRWWLTAEDPFQCLAACINLSEALKSSSPHSVISHLPIHQDGSCNGLQHYAALGRNT 729
+NG+RWWL AEDPFQCLAACINLSEALKSSSPH+VISHLPIHQDGSCNGLQHYAALGR++
Sbjct: 635 LNGNRWWLNAEDPFQCLAACINLSEALKSSSPHTVISHLPIHQDGSCNGLQHYAALGRDS 694
Query: 730 LEAAAVNLVAGEKPADVYSEIAVRVHEIMKRDSNKDPSKHPQALLAKILIDQVDRKLVKQ 789
+EAAAVNLVAGEKPADVY+EIA+RV I++ DS KDP+ P ALLAK+LIDQVDRKLVKQ
Sbjct: 695 MEAAAVNLVAGEKPADVYTEIALRVDHIIRGDSIKDPAIDPNALLAKLLIDQVDRKLVKQ 754
Query: 790 TVMTSVYGVTFVGAREQIKRRLEEKGHITDDRQLFAAACYAAKVTLTALGEIFEAARSIM 849
TVMTSVYGVT+VGAREQIKRRLEEKG I DDR LF A+CYAAKVTL ALGE+F+AAR M
Sbjct: 755 TVMTSVYGVTYVGAREQIKRRLEEKGLIDDDRLLFTASCYAAKVTLAALGELFQAARGTM 814
Query: 850 GWLGDCAKVIASENQPVRWTTPLGLPVVQPYCKNERHLIRTSLQVLALQREGNLVKIRKQ 909
WLGDCAKVIA ENQPVRWTTPLGLPVVQPY K +RH+IRTSLQ+LALQREG+ V++RKQ
Sbjct: 815 TWLGDCAKVIALENQPVRWTTPLGLPVVQPYFKTQRHVIRTSLQILALQREGDAVEVRKQ 874
Query: 910 RTAFPPNFVHSLDGSHMMMTAVACRDAGLHFAGL 943
RTAFPPNFVHSLDGSHMMMTAVACRDAGL FAG+
Sbjct: 875 RTAFPPNFVHSLDGSHMMMTAVACRDAGLQFAGV 908
>gi|308026130|emb|CBL69150.1| RNA polymerase [Nuphar advena]
Length = 985
Score = 1149 bits (2971), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 540/806 (66%), Positives = 667/806 (82%), Gaps = 7/806 (0%)
Query: 141 RIFVQDPPWFSSIFLKGLYKRIKLQEYREMKKRKFNLLRRRQVKQETEAWERMVDEYKEL 200
R+F+ DPPW ++ +R + RE + K+NLLRRRQVK ETEAWE EY+EL
Sbjct: 115 RVFLLDPPWLPGGLVQ---ERGRPARERERESSKYNLLRRRQVKMETEAWEDAAREYREL 171
Query: 201 EAKMIEKRLAPNLPHIKGLFLGWFGPLSEAIEREQKMQRTKKQK--AAYAPHIELLPADK 258
+M EK+LAP+LP++K LFLGWF P +AI+ +Q++QR +K+ AAYAP I LPAD
Sbjct: 172 IKEMCEKKLAPHLPYVKSLFLGWFEPFRDAIKEDQELQRRRKKNLAAAYAPFIGHLPADM 231
Query: 259 VAVIVMHKMMGLVMAGHEDRCVQVVQAAVHIGMAIEQEIRIHSFLEKTKNYKRK-KIIAD 317
+AVIVMHKMM L+M G +D CV++V AA HIG AIEQE+RI++F +K K R+ +I+++
Sbjct: 232 MAVIVMHKMMVLLMNGQDDGCVRLVHAACHIGEAIEQEVRIYNFFQKIKKSTRENQILSE 291
Query: 318 TEEVLSKEKELLRKRVNSLIKSKRVMEAQKLLKNEETKPWGRDTQAKLGSRLVELLIETA 377
E SK +E LRKRV +L+K K++ + Q L++ ++ +PWGRD+ AKLGSR ++LLI+T
Sbjct: 292 NHENESKNQEALRKRVTNLLKKKKIRDVQLLVEADDVEPWGRDSHAKLGSRXIDLLIQTX 351
Query: 378 YVQHPVNPADYSPPDVRPAFRHRFKTILKHPGQKTTKRYGVVECDPLVLEGLDRSAKHML 437
YVQ P+N PP++RPAFRH FKT K + KRYG++ECDPLV +GLD +A+H++
Sbjct: 352 YVQPPLNQLAZGPPEIRPAFRHTFKTXKKE-XDNSVKRYGIIECDPLVRKGLDATARHLV 410
Query: 438 IPYVPMLVPPKKWKGYNKGGYLFLPSYVMRTHGSRKQQEALKSVTGNCMKKVFEALDTLG 497
IPY+PML+PPKKW GY+KGG+LFLPSYVMRTHG+++Q++ALKSV +K+VFEALDTLG
Sbjct: 411 IPYMPMLIPPKKWTGYDKGGHLFLPSYVMRTHGAKQQRDALKSVPKXQLKEVFEALDTLG 470
Query: 498 STKWRVNKQVLSVLESIWVSGGNIAGLVDRNDVLIPEKPLSEDMTEVQKWKWSVRKAKKI 557
STKWRVNK+VL V++S+W SG IAGLVD +D+ +PEKP +ED ++++W+WSV+K KK
Sbjct: 471 STKWRVNKRVLDVIDSLWASGRPIAGLVDHSDIALPEKPCTEDEAQMRRWRWSVKKVKKE 530
Query: 558 NQERHSQRCDTELKLSVARRMKDEEGFYYPHNLDFRGRAYPMHPHLNHLSSDVCRGVLEF 617
N ERH+QRCD ELKLSVAR+M+ E+GFYYPHNLDFRGRAYPMHPHLNHL SD+CRG+LEF
Sbjct: 531 NCERHAQRCDIELKLSVARKMRKEDGFYYPHNLDFRGRAYPMHPHLNHLGSDLCRGILEF 590
Query: 618 AEGRPLGKSGLRWLKIHLANLFSGGVEKLSHDGRLAFVENHLYEIFDSAENPINGSRWWL 677
AEG+PLGK+GLRWLKIHLANL+ GGV+KLS DGRL FVENHL +IFDSAE PI G +WWL
Sbjct: 591 AEGKPLGKTGLRWLKIHLANLYGGGVDKLSFDGRLTFVENHLADIFDSAERPIEGRQWWL 650
Query: 678 TAEDPFQCLAACINLSEALKSSSPHSVISHLPIHQDGSCNGLQHYAALGRNTLEAAAVNL 737
AEDPFQCLAACI+LS ALKSSSP ISH+P+H DGSCNGLQHYAALGR+ L AA+VNL
Sbjct: 651 NAEDPFQCLAACIDLSXALKSSSPEDAISHIPVHLDGSCNGLQHYAALGRDRLGAASVNL 710
Query: 738 VAGEKPADVYSEIAVRVHEIMKRDSNKDPSKHPQALLAKILIDQVDRKLVKQTVMTSVYG 797
V+GEKP DVYS IA RV EI+ RDS KDP+ HP +LLA+ILIDQVDRKLVKQTVMTSVYG
Sbjct: 711 VSGEKPXDVYSGIAARVMEIVVRDSKKDPAVHPTSLLARILIDQVDRKLVKQTVMTSVYG 770
Query: 798 VTFVGAREQIKRRLEEKGHITDDRQLFAAACYAAKVTLTALGEIFEAARSIMGWLGDCAK 857
VT++GAR+QIKRRL+E+ ITDD+ LF+AACYAAKVTL+AL E+F+AARSIM WLGDCAK
Sbjct: 771 VTYIGARDQIKRRLKERDFITDDKLLFSAACYAAKVTLSALEEMFQAARSIMSWLGDCAK 830
Query: 858 VIASENQPVRWTTPLGLPVVQPYCKNERHLIRTSLQVLALQREGNLVKIRKQRTAFPPNF 917
VIASEN+PVRWTTPLGLPVVQPY K RHL+RTSLQVLALQRE N V +++Q+TAFPPNF
Sbjct: 831 VIASENEPVRWTTPLGLPVVQPYWKQSRHLVRTSLQVLALQRESNKVLVKRQKTAFPPNF 890
Query: 918 VHSLDGSHMMMTAVACRDAGLHFAGL 943
VHSLDGSHMMMTAVAC+ AGL+FAG+
Sbjct: 891 VHSLDGSHMMMTAVACKLAGLNFAGV 916
>gi|88933966|sp|Q8L6J3.2|RPO2B_TOBAC RecName: Full=DNA-directed RNA polymerase 2B,
chloroplastic/mitochondrial; AltName:
Full=NictaRpoT2-tom; AltName: Full=T7 bacteriophage-type
single subunit RNA polymerase 2B; Flags: Precursor
gi|21425665|emb|CAC95020.1| mitochondrial and chloroplast RNA polymerase [Nicotiana tabacum]
Length = 1021
Score = 1104 bits (2856), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 513/777 (66%), Positives = 641/777 (82%), Gaps = 5/777 (0%)
Query: 170 MKKRKFNLLRRRQVKQETEAWERMVDEYKELEAKMIEKRLAPNLPHIKGLFLGWFGPLSE 229
M RK+ L+RRQVK ETEAWE+ EYKEL M E++LAPNLP++K LFLGWF PL +
Sbjct: 178 MGHRKYQTLKRRQVKVETEAWEQAAKEYKELLFDMCEQKLAPNLPYVKSLFLGWFEPLRD 237
Query: 230 AIEREQKMQRTKKQKAAYAPHIELLPADKVAVIVMHKMMGLVMAGHEDRCVQVVQAAVHI 289
I EQ++ K KAAYA ++ LPAD +AVI MHK+MGL+M G + +VVQAA+ I
Sbjct: 238 KIAEEQELCSQGKSKAAYAKYLYQLPADMMAVITMHKLMGLLMTGGDHGTARVVQAALVI 297
Query: 290 GMAIEQEIRIHSFLEKTKNYK--RKKIIADTEEVLSKEKELLRKRVNSLIKSKRVMEAQK 347
G AIEQE+RIH+FLEKTK K + K D E V ++E+E LRK+V +L+K +++ +
Sbjct: 298 GDAIEQEVRIHNFLEKTKKQKAEKDKQKEDGEHV-TQEQEKLRKKVTNLMKKQKLRAVGQ 356
Query: 348 LLK-NEETKPWGRDTQAKLGSRLVELLIETAYVQHPVNPADYSPPDVRPAFRHRFKTILK 406
+++ +++KPWG+D +AK+GSRL+ELL++TAY+Q P N PPD+RPAF H +T+ K
Sbjct: 357 IVRRQDDSKPWGQDAKAKVGSRLIELLLQTAYIQPPANQLAVDPPDIRPAFLHSVRTVAK 416
Query: 407 HPGQKTTKRYGVVECDPLVLEGLDRSAKHMLIPYVPMLVPPKKWKGYNKGGYLFLPSYVM 466
+ ++RYG+++CD LV +GL+R+A+HM+IPY+PMLVPP KW GY+KGG+L+LPSYVM
Sbjct: 417 ET-KSASRRYGIIQCDELVFKGLERTARHMVIPYMPMLVPPVKWTGYDKGGHLYLPSYVM 475
Query: 467 RTHGSRKQQEALKSVTGNCMKKVFEALDTLGSTKWRVNKQVLSVLESIWVSGGNIAGLVD 526
RTHG+R+Q+EA+K + N ++ VFEALDTLGSTKWR+NK+VLSV++ IW GG +A LVD
Sbjct: 476 RTHGARQQREAVKRASRNQLQPVFEALDTLGSTKWRINKRVLSVIDRIWAGGGRLADLVD 535
Query: 527 RNDVLIPEKPLSEDMTEVQKWKWSVRKAKKINQERHSQRCDTELKLSVARRMKDEEGFYY 586
R+D +PE+P +ED KW+W V+ KK N+ERHSQRCD ELKL+VAR+MKDEEGF+Y
Sbjct: 536 RDDAPLPEEPDTEDEALRTKWRWKVKSVKKENRERHSQRCDIELKLAVARKMKDEEGFFY 595
Query: 587 PHNLDFRGRAYPMHPHLNHLSSDVCRGVLEFAEGRPLGKSGLRWLKIHLANLFSGGVEKL 646
PHN+DFRGRAYPMHPHLNHL SD+CRGVL FAEGRPLG+SGLRWLKIHLANLF+GGVEKL
Sbjct: 596 PHNVDFRGRAYPMHPHLNHLGSDICRGVLVFAEGRPLGESGLRWLKIHLANLFAGGVEKL 655
Query: 647 SHDGRLAFVENHLYEIFDSAENPINGSRWWLTAEDPFQCLAACINLSEALKSSSPHSVIS 706
S +GR+AF ENH+ +IFDSA+ P+ G RWWL AEDPFQCLA CINLSEA++SSSP + IS
Sbjct: 656 SLEGRIAFTENHMDDIFDSADKPLEGRRWWLNAEDPFQCLAVCINLSEAVRSSSPETSIS 715
Query: 707 HLPIHQDGSCNGLQHYAALGRNTLEAAAVNLVAGEKPADVYSEIAVRVHEIMKRDSNKDP 766
H+P+HQDGSCNGLQHYAALGR+ L AAAVNLVAGEKPADVYS IA RV +IMKRD+ +DP
Sbjct: 716 HIPVHQDGSCNGLQHYAALGRDELGAAAVNLVAGEKPADVYSGIAARVLDIMKRDAQRDP 775
Query: 767 SKHPQALLAKILIDQVDRKLVKQTVMTSVYGVTFVGAREQIKRRLEEKGHITDDRQLFAA 826
++ P A+ A+ L++QVDRKLVKQTVMTSVYGVT++GAR+QIKRRL+E+G I DD +LF A
Sbjct: 776 AEFPDAVRARALVNQVDRKLVKQTVMTSVYGVTYIGARDQIKRRLKERGAIADDSELFGA 835
Query: 827 ACYAAKVTLTALGEIFEAARSIMGWLGDCAKVIASENQPVRWTTPLGLPVVQPYCKNERH 886
ACYAAKVTLTALGE+FEAARSIM WLG+CAK+IASEN+PVRWTTPLGLPVVQPY K RH
Sbjct: 836 ACYAAKVTLTALGEMFEAARSIMTWLGECAKIIASENEPVRWTTPLGLPVVQPYRKIGRH 895
Query: 887 LIRTSLQVLALQREGNLVKIRKQRTAFPPNFVHSLDGSHMMMTAVACRDAGLHFAGL 943
LI+TSLQ+L LQ+E V +++QRTAFPPNF+HSLDGSHMMMTAVACR AGL+FAG+
Sbjct: 896 LIKTSLQILTLQQETEKVMVKRQRTAFPPNFIHSLDGSHMMMTAVACRRAGLNFAGV 952
>gi|222641119|gb|EEE69251.1| hypothetical protein OsJ_28503 [Oryza sativa Japonica Group]
Length = 983
Score = 1103 bits (2854), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 512/776 (65%), Positives = 643/776 (82%), Gaps = 9/776 (1%)
Query: 174 KFNLLRRRQVKQETEAWERMVDEYKELEAKMIEKRLAPNLPHIKGLFLGWFGPLSEAIER 233
K+ +LRRRQ++ ETEAWE+ +EY+EL A M +++LAPNLP++K LFLGWF PL + I
Sbjct: 142 KYAMLRRRQIQIETEAWEQAAEEYRELLADMCQQKLAPNLPYVKSLFLGWFEPLRDQIIA 201
Query: 234 EQKMQRTKKQKAAYAPHIELLPADKVAVIVMHKMMGLVMAGHEDRCVQVVQAAVHIGMAI 293
EQ++ + +A++A + +LPAD +AVI MHK+MGL+M G D V+V+QAA IG AI
Sbjct: 202 EQELVGERGARASHARYFNMLPADMMAVITMHKLMGLLMTGSGDGSVRVIQAACQIGEAI 261
Query: 294 EQEIRIHSFLEKTKNYKRKKIIADTEEV-----LSKEKELLRKRVNSLIKSKRVMEAQKL 348
E E+RIH FLEKTK K++ D EE ++KE+E LRK+V L+K +++ + + +
Sbjct: 262 EHEVRIHKFLEKTKKKSNKEM--DNEEEGGDSDIAKEQERLRKKVTDLMKKQKIRQVRNI 319
Query: 349 LKNEE-TKPWGRDTQAKLGSRLVELLIETAYVQHPVNPADYSPPDVRPAFRHRFKTILKH 407
+K ++ +KPWG+D AK+GSRL+EL+IETAY+Q P + + PPD+RPAF H +T+ +
Sbjct: 320 VKKQDNSKPWGQDAHAKVGSRLIELMIETAYIQPPASQSADGPPDIRPAFTHEMRTVARE 379
Query: 408 PGQKTTKRYGVVECDPLVLEGLDRSAKHMLIPYVPMLVPPKKWKGYNKGGYLFLPSYVMR 467
QK+++RYGV++CDPLV +GLDR+AKHM+IPY+PML+PP W GY+KG +LFLPSYVMR
Sbjct: 380 Q-QKSSRRYGVIKCDPLVRQGLDRTAKHMVIPYMPMLIPPISWTGYDKGAHLFLPSYVMR 438
Query: 468 THGSRKQQEALKSVTGNCMKKVFEALDTLGSTKWRVNKQVLSVLESIWVSGGNIAGLVDR 527
THG+R+Q++A++ M+ VFEAL+TLGSTKWRVNK+VLS+++ IW SGG +A LVDR
Sbjct: 439 THGARQQRDAVRRAPREQMQSVFEALNTLGSTKWRVNKRVLSIVDRIWSSGGRLADLVDR 498
Query: 528 NDVLIPEKPLSEDMTEVQKWKWSVRKAKKINQERHSQRCDTELKLSVARRMKDEEGFYYP 587
DV +PEKP +ED +++KW+W++R AKK N ERHSQRCD ELKL+VAR+MKDE+GFYYP
Sbjct: 499 TDVALPEKPDTEDEDKLKKWRWTLRAAKKENSERHSQRCDVELKLAVARKMKDEDGFYYP 558
Query: 588 HNLDFRGRAYPMHPHLNHLSSDVCRGVLEFAEGRPLGKSGLRWLKIHLANLFSGGVEKLS 647
HNLDFRGRAYPMHP+LNHL SD+CRGVLEFAEGRPLGKSGLRWLKIHLANL++GGV+KLS
Sbjct: 559 HNLDFRGRAYPMHPYLNHLGSDLCRGVLEFAEGRPLGKSGLRWLKIHLANLYAGGVDKLS 618
Query: 648 HDGRLAFVENHLYEIFDSAENPINGSRWWLTAEDPFQCLAACINLSEALKSSSPHSVISH 707
+DGR+AF ENHL +IFDSA+ P+ G RWWL AEDPFQCLA CINL+EAL+S SP ++ISH
Sbjct: 619 YDGRIAFTENHLEDIFDSADRPLEGKRWWLGAEDPFQCLAVCINLTEALRSPSPETMISH 678
Query: 708 LPIHQDGSCNGLQHYAALGRNTLEAAAVNLVAGEKPADVYSEIAVRVHEIMKRDSNKDPS 767
+P+HQDGSCNGLQHYAALGR+ L A AVNLVAGEKPADVY+ IA RV EIMK D+ KDP+
Sbjct: 679 IPVHQDGSCNGLQHYAALGRDKLGAIAVNLVAGEKPADVYTGIATRVVEIMKNDALKDPA 738
Query: 768 KHPQALLAKILIDQVDRKLVKQTVMTSVYGVTFVGAREQIKRRLEEKGHITDDRQLFAAA 827
P A A++L+DQVDRKLVKQTVMTSVYGVT+VGAREQIKRRL+E+ I DD +LF+A+
Sbjct: 739 TDPDAARARLLLDQVDRKLVKQTVMTSVYGVTYVGAREQIKRRLKERDMICDDSELFSAS 798
Query: 828 CYAAKVTLTALGEIFEAARSIMGWLGDCAKVIASENQPVRWTTPLGLPVVQPYCKNERHL 887
CYAAKVTLTALGE+F+AARSIM WLGDCAKVIA EN+PVRWTTPLGLPVVQPY K RHL
Sbjct: 799 CYAAKVTLTALGEMFQAARSIMNWLGDCAKVIACENEPVRWTTPLGLPVVQPYRKLGRHL 858
Query: 888 IRTSLQVLALQREGNLVKIRKQRTAFPPNFVHSLDGSHMMMTAVACRDAGLHFAGL 943
I+TSLQVL LQRE + V +++QRTAFPPNFVHSLDGSHMMMTAVAC+ GL+FAG+
Sbjct: 859 IKTSLQVLTLQRETDKVMVKRQRTAFPPNFVHSLDGSHMMMTAVACKRQGLNFAGV 914
>gi|115478128|ref|NP_001062659.1| Os09g0246200 [Oryza sativa Japonica Group]
gi|30698494|dbj|BAC76604.1| RpoT1 [Oryza sativa Japonica Group]
gi|37360973|dbj|BAC98395.1| T7 bacteriophage-type single subunit RNA polymerase [Oryza sativa
Japonica Group]
gi|113630892|dbj|BAF24573.1| Os09g0246200 [Oryza sativa Japonica Group]
Length = 1017
Score = 1103 bits (2853), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 512/776 (65%), Positives = 643/776 (82%), Gaps = 9/776 (1%)
Query: 174 KFNLLRRRQVKQETEAWERMVDEYKELEAKMIEKRLAPNLPHIKGLFLGWFGPLSEAIER 233
K+ +LRRRQ++ ETEAWE+ +EY+EL A M +++LAPNLP++K LFLGWF PL + I
Sbjct: 176 KYAMLRRRQIQIETEAWEQAAEEYRELLADMCQQKLAPNLPYVKSLFLGWFEPLRDQIIA 235
Query: 234 EQKMQRTKKQKAAYAPHIELLPADKVAVIVMHKMMGLVMAGHEDRCVQVVQAAVHIGMAI 293
EQ++ + +A++A + +LPAD +AVI MHK+MGL+M G D V+V+QAA IG AI
Sbjct: 236 EQELVGERGARASHARYFNMLPADMMAVITMHKLMGLLMTGSGDGSVRVIQAACQIGEAI 295
Query: 294 EQEIRIHSFLEKTKNYKRKKIIADTEEV-----LSKEKELLRKRVNSLIKSKRVMEAQKL 348
E E+RIH FLEKTK K++ D EE ++KE+E LRK+V L+K +++ + + +
Sbjct: 296 EHEVRIHKFLEKTKKKSNKEM--DNEEEGGDSDIAKEQERLRKKVTDLMKKQKIRQVRNI 353
Query: 349 LKNEE-TKPWGRDTQAKLGSRLVELLIETAYVQHPVNPADYSPPDVRPAFRHRFKTILKH 407
+K ++ +KPWG+D AK+GSRL+EL+IETAY+Q P + + PPD+RPAF H +T+ +
Sbjct: 354 VKKQDNSKPWGQDAHAKVGSRLIELMIETAYIQPPASQSADGPPDIRPAFTHEMRTVARE 413
Query: 408 PGQKTTKRYGVVECDPLVLEGLDRSAKHMLIPYVPMLVPPKKWKGYNKGGYLFLPSYVMR 467
QK+++RYGV++CDPLV +GLDR+AKHM+IPY+PML+PP W GY+KG +LFLPSYVMR
Sbjct: 414 -QQKSSRRYGVIKCDPLVRQGLDRTAKHMVIPYMPMLIPPISWTGYDKGAHLFLPSYVMR 472
Query: 468 THGSRKQQEALKSVTGNCMKKVFEALDTLGSTKWRVNKQVLSVLESIWVSGGNIAGLVDR 527
THG+R+Q++A++ M+ VFEAL+TLGSTKWRVNK+VLS+++ IW SGG +A LVDR
Sbjct: 473 THGARQQRDAVRRAPREQMQSVFEALNTLGSTKWRVNKRVLSIVDRIWSSGGRLADLVDR 532
Query: 528 NDVLIPEKPLSEDMTEVQKWKWSVRKAKKINQERHSQRCDTELKLSVARRMKDEEGFYYP 587
DV +PEKP +ED +++KW+W++R AKK N ERHSQRCD ELKL+VAR+MKDE+GFYYP
Sbjct: 533 TDVALPEKPDTEDEDKLKKWRWTLRAAKKENSERHSQRCDVELKLAVARKMKDEDGFYYP 592
Query: 588 HNLDFRGRAYPMHPHLNHLSSDVCRGVLEFAEGRPLGKSGLRWLKIHLANLFSGGVEKLS 647
HNLDFRGRAYPMHP+LNHL SD+CRGVLEFAEGRPLGKSGLRWLKIHLANL++GGV+KLS
Sbjct: 593 HNLDFRGRAYPMHPYLNHLGSDLCRGVLEFAEGRPLGKSGLRWLKIHLANLYAGGVDKLS 652
Query: 648 HDGRLAFVENHLYEIFDSAENPINGSRWWLTAEDPFQCLAACINLSEALKSSSPHSVISH 707
+DGR+AF ENHL +IFDSA+ P+ G RWWL AEDPFQCLA CINL+EAL+S SP ++ISH
Sbjct: 653 YDGRIAFTENHLEDIFDSADRPLEGKRWWLGAEDPFQCLAVCINLTEALRSPSPETMISH 712
Query: 708 LPIHQDGSCNGLQHYAALGRNTLEAAAVNLVAGEKPADVYSEIAVRVHEIMKRDSNKDPS 767
+P+HQDGSCNGLQHYAALGR+ L A AVNLVAGEKPADVY+ IA RV EIMK D+ KDP+
Sbjct: 713 IPVHQDGSCNGLQHYAALGRDKLGAIAVNLVAGEKPADVYTGIATRVVEIMKNDALKDPA 772
Query: 768 KHPQALLAKILIDQVDRKLVKQTVMTSVYGVTFVGAREQIKRRLEEKGHITDDRQLFAAA 827
P A A++L+DQVDRKLVKQTVMTSVYGVT+VGAREQIKRRL+E+ I DD +LF+A+
Sbjct: 773 TDPDAARARLLLDQVDRKLVKQTVMTSVYGVTYVGAREQIKRRLKERDMICDDSELFSAS 832
Query: 828 CYAAKVTLTALGEIFEAARSIMGWLGDCAKVIASENQPVRWTTPLGLPVVQPYCKNERHL 887
CYAAKVTLTALGE+F+AARSIM WLGDCAKVIA EN+PVRWTTPLGLPVVQPY K RHL
Sbjct: 833 CYAAKVTLTALGEMFQAARSIMNWLGDCAKVIACENEPVRWTTPLGLPVVQPYRKLGRHL 892
Query: 888 IRTSLQVLALQREGNLVKIRKQRTAFPPNFVHSLDGSHMMMTAVACRDAGLHFAGL 943
I+TSLQVL LQRE + V +++QRTAFPPNFVHSLDGSHMMMTAVAC+ GL+FAG+
Sbjct: 893 IKTSLQVLTLQRETDKVMVKRQRTAFPPNFVHSLDGSHMMMTAVACKRQGLNFAGV 948
>gi|48716693|dbj|BAD23376.1| putative phage-type RNA polymerase [Oryza sativa Japonica Group]
gi|48716846|dbj|BAD23544.1| putative phage-type RNA polymerase [Oryza sativa Japonica Group]
gi|215694941|dbj|BAG90132.1| unnamed protein product [Oryza sativa Japonica Group]
Length = 951
Score = 1102 bits (2851), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 511/774 (66%), Positives = 641/774 (82%), Gaps = 9/774 (1%)
Query: 174 KFNLLRRRQVKQETEAWERMVDEYKELEAKMIEKRLAPNLPHIKGLFLGWFGPLSEAIER 233
K+ +LRRRQ++ ETEAWE+ +EY+EL A M +++LAPNLP++K LFLGWF PL + I
Sbjct: 176 KYAMLRRRQIQIETEAWEQAAEEYRELLADMCQQKLAPNLPYVKSLFLGWFEPLRDQIIA 235
Query: 234 EQKMQRTKKQKAAYAPHIELLPADKVAVIVMHKMMGLVMAGHEDRCVQVVQAAVHIGMAI 293
EQ++ + +A++A + +LPAD +AVI MHK+MGL+M G D V+V+QAA IG AI
Sbjct: 236 EQELVGERGARASHARYFNMLPADMMAVITMHKLMGLLMTGSGDGSVRVIQAACQIGEAI 295
Query: 294 EQEIRIHSFLEKTKNYKRKKIIADTEEV-----LSKEKELLRKRVNSLIKSKRVMEAQKL 348
E E+RIH FLEKTK K++ D EE ++KE+E LRK+V L+K +++ + + +
Sbjct: 296 EHEVRIHKFLEKTKKKSNKEM--DNEEEGGDSDIAKEQERLRKKVTDLMKKQKIRQVRNI 353
Query: 349 LKNEE-TKPWGRDTQAKLGSRLVELLIETAYVQHPVNPADYSPPDVRPAFRHRFKTILKH 407
+K ++ +KPWG+D AK+GSRL+EL+IETAY+Q P + + PPD+RPAF H +T+ +
Sbjct: 354 VKKQDNSKPWGQDAHAKVGSRLIELMIETAYIQPPASQSADGPPDIRPAFTHEMRTVARE 413
Query: 408 PGQKTTKRYGVVECDPLVLEGLDRSAKHMLIPYVPMLVPPKKWKGYNKGGYLFLPSYVMR 467
QK+++RYGV++CDPLV +GLDR+AKHM+IPY+PML+PP W GY+KG +LFLPSYVMR
Sbjct: 414 -QQKSSRRYGVIKCDPLVRQGLDRTAKHMVIPYMPMLIPPISWTGYDKGAHLFLPSYVMR 472
Query: 468 THGSRKQQEALKSVTGNCMKKVFEALDTLGSTKWRVNKQVLSVLESIWVSGGNIAGLVDR 527
THG+R+Q++A++ M+ VFEAL+TLGSTKWRVNK+VLS+++ IW SGG +A LVDR
Sbjct: 473 THGARQQRDAVRRAPREQMQSVFEALNTLGSTKWRVNKRVLSIVDRIWSSGGRLADLVDR 532
Query: 528 NDVLIPEKPLSEDMTEVQKWKWSVRKAKKINQERHSQRCDTELKLSVARRMKDEEGFYYP 587
DV +PEKP +ED +++KW+W++R AKK N ERHSQRCD ELKL+VAR+MKDE+GFYYP
Sbjct: 533 TDVALPEKPDTEDEDKLKKWRWTLRAAKKENSERHSQRCDVELKLAVARKMKDEDGFYYP 592
Query: 588 HNLDFRGRAYPMHPHLNHLSSDVCRGVLEFAEGRPLGKSGLRWLKIHLANLFSGGVEKLS 647
HNLDFRGRAYPMHP+LNHL SD+CRGVLEFAEGRPLGKSGLRWLKIHLANL++GGV+KLS
Sbjct: 593 HNLDFRGRAYPMHPYLNHLGSDLCRGVLEFAEGRPLGKSGLRWLKIHLANLYAGGVDKLS 652
Query: 648 HDGRLAFVENHLYEIFDSAENPINGSRWWLTAEDPFQCLAACINLSEALKSSSPHSVISH 707
+DGR+AF ENHL +IFDSA+ P+ G RWWL AEDPFQCLA CINL+EAL+S SP ++ISH
Sbjct: 653 YDGRIAFTENHLEDIFDSADRPLEGKRWWLGAEDPFQCLAVCINLTEALRSPSPETMISH 712
Query: 708 LPIHQDGSCNGLQHYAALGRNTLEAAAVNLVAGEKPADVYSEIAVRVHEIMKRDSNKDPS 767
+P+HQDGSCNGLQHYAALGR+ L A AVNLVAGEKPADVY+ IA RV EIMK D+ KDP+
Sbjct: 713 IPVHQDGSCNGLQHYAALGRDKLGAIAVNLVAGEKPADVYTGIATRVVEIMKNDALKDPA 772
Query: 768 KHPQALLAKILIDQVDRKLVKQTVMTSVYGVTFVGAREQIKRRLEEKGHITDDRQLFAAA 827
P A A++L+DQVDRKLVKQTVMTSVYGVT+VGAREQIKRRL+E+ I DD +LF+A+
Sbjct: 773 TDPDAARARLLLDQVDRKLVKQTVMTSVYGVTYVGAREQIKRRLKERDMICDDSELFSAS 832
Query: 828 CYAAKVTLTALGEIFEAARSIMGWLGDCAKVIASENQPVRWTTPLGLPVVQPYCKNERHL 887
CYAAKVTLTALGE+F+AARSIM WLGDCAKVIA EN+PVRWTTPLGLPVVQPY K RHL
Sbjct: 833 CYAAKVTLTALGEMFQAARSIMNWLGDCAKVIACENEPVRWTTPLGLPVVQPYRKLGRHL 892
Query: 888 IRTSLQVLALQREGNLVKIRKQRTAFPPNFVHSLDGSHMMMTAVACRDAGLHFA 941
I+TSLQVL LQRE + V +++QRTAFPPNFVHSLDGSHMMMTAVAC+ GL+FA
Sbjct: 893 IKTSLQVLTLQRETDKVMVKRQRTAFPPNFVHSLDGSHMMMTAVACKRQGLNFA 946
>gi|225425009|ref|XP_002267464.1| PREDICTED: DNA-directed RNA polymerase 1, mitochondrial [Vitis
vinifera]
Length = 978
Score = 1102 bits (2850), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 512/772 (66%), Positives = 634/772 (82%), Gaps = 3/772 (0%)
Query: 174 KFNLLRRRQVKQETEAWERMVDEYKELEAKMIEKRLAPNLPHIKGLFLGWFGPLSEAIER 233
K N+LRRRQ+K ETEAWE EY+EL + M E++LAPNLP+IK LFLGWF PL + I
Sbjct: 139 KHNVLRRRQIKMETEAWEEAAKEYRELLSDMCEQKLAPNLPYIKSLFLGWFEPLRDVIAA 198
Query: 234 EQKMQRTKKQKAAYAPHIELLPADKVAVIVMHKMMGLVMAGHEDRCVQVVQAAVHIGMAI 293
EQ + + K +AAYAP+ + LPAD +AVI MHK+MGL+M G + +VVQAA HIG AI
Sbjct: 199 EQDLCKQGKNRAAYAPYFDHLPADMMAVITMHKLMGLLMTGEGNGSARVVQAACHIGEAI 258
Query: 294 EQEIRIHSFLEKTKNYKRKKIIADT-EEVLSKEKELLRKRVNSLIKSKRVMEAQKLLK-N 351
E E+RI F+EKTK D ++KE+E LRK+V+ L+K +++ + ++++K
Sbjct: 259 EHEVRIQRFMEKTKKKSASSNNPDGGSNPVTKEQEKLRKKVSMLMKKQKLQQVRQIVKRQ 318
Query: 352 EETKPWGRDTQAKLGSRLVELLIETAYVQHPVNPADYSPPDVRPAFRHRFKTILKHPGQK 411
+++KPWG+D K+GSRL+ELLIETAY+Q P + PPD+RPAF H KT++K QK
Sbjct: 319 DDSKPWGQDANVKVGSRLIELLIETAYIQPPADQLGDGPPDIRPAFVHTLKTVIKET-QK 377
Query: 412 TTKRYGVVECDPLVLEGLDRSAKHMLIPYVPMLVPPKKWKGYNKGGYLFLPSYVMRTHGS 471
T+RYGV+ECDPLV +GL+++A+HM+IPY+PMLVPP W GY+KG YLFLPSYVMR HG+
Sbjct: 378 GTRRYGVIECDPLVRKGLEKTARHMVIPYMPMLVPPLNWTGYDKGAYLFLPSYVMRIHGA 437
Query: 472 RKQQEALKSVTGNCMKKVFEALDTLGSTKWRVNKQVLSVLESIWVSGGNIAGLVDRNDVL 531
R+Q+EA+K ++ FEAL+TLG+TKWR+NK+VL V++ IW SGG +A LVDR DV
Sbjct: 438 RQQREAIKRAPRKALEPAFEALNTLGNTKWRINKRVLGVIDRIWASGGRLADLVDREDVP 497
Query: 532 IPEKPLSEDMTEVQKWKWSVRKAKKINQERHSQRCDTELKLSVARRMKDEEGFYYPHNLD 591
+PE+P +ED E++KWKW VR KK N ERHSQRCD ELKL+VAR+MKDE+GF+YPHNLD
Sbjct: 498 LPEEPDTEDEAEIRKWKWKVRSVKKENSERHSQRCDIELKLAVARKMKDEDGFFYPHNLD 557
Query: 592 FRGRAYPMHPHLNHLSSDVCRGVLEFAEGRPLGKSGLRWLKIHLANLFSGGVEKLSHDGR 651
FRGRAYPMHP+LNHL SD+CRG+LEFAEGRPLGKSGLRWLKIHLAN+++GGV+KLS++GR
Sbjct: 558 FRGRAYPMHPYLNHLGSDLCRGILEFAEGRPLGKSGLRWLKIHLANVYAGGVDKLSYEGR 617
Query: 652 LAFVENHLYEIFDSAENPINGSRWWLTAEDPFQCLAACINLSEALKSSSPHSVISHLPIH 711
+AF ENHL +IFDSA+ P+ G RWWL+AEDPFQCLA CINLSEAL+SSSP + ISH+P+H
Sbjct: 618 VAFTENHLEDIFDSADRPLEGRRWWLSAEDPFQCLATCINLSEALRSSSPETTISHMPVH 677
Query: 712 QDGSCNGLQHYAALGRNTLEAAAVNLVAGEKPADVYSEIAVRVHEIMKRDSNKDPSKHPQ 771
QDGSCNGLQHYAALGR+ L AAAVNLVAGEKPADVYS IA RV +IM+RD+ KDP+ P
Sbjct: 678 QDGSCNGLQHYAALGRDKLGAAAVNLVAGEKPADVYSGIAARVLDIMQRDAQKDPATEPN 737
Query: 772 ALLAKILIDQVDRKLVKQTVMTSVYGVTFVGAREQIKRRLEEKGHITDDRQLFAAACYAA 831
AL A++LI QVDRKLVKQTVMTSVYGVT++GAR+QIKRRL+E+ I D+ ++F+A+CYAA
Sbjct: 738 ALRARLLISQVDRKLVKQTVMTSVYGVTYIGARDQIKRRLKERCAIADEGEVFSASCYAA 797
Query: 832 KVTLTALGEIFEAARSIMGWLGDCAKVIASENQPVRWTTPLGLPVVQPYCKNERHLIRTS 891
K TLTALGE+FEAARSIM WLGDCAKVIASEN PVRW TPLGLPVVQPY K RHLI+TS
Sbjct: 798 KTTLTALGEMFEAARSIMSWLGDCAKVIASENHPVRWNTPLGLPVVQPYRKLGRHLIKTS 857
Query: 892 LQVLALQREGNLVKIRKQRTAFPPNFVHSLDGSHMMMTAVACRDAGLHFAGL 943
LQVL+LQRE + V +++QRTAFPPNFVHSLDGSHMMMTAVAC+ AGL+FAG+
Sbjct: 858 LQVLSLQRETDKVMVKRQRTAFPPNFVHSLDGSHMMMTAVACQKAGLNFAGV 909
>gi|90111039|sp|Q8VWF8.2|RPOT2_NICSY RecName: Full=DNA-directed RNA polymerase 2,
chloroplastic/mitochondrial; AltName: Full=NsRpoT-B;
AltName: Full=T7 bacteriophage-type single subunit RNA
polymerase 2; Flags: Precursor
gi|21425639|emb|CAC82575.2| phage-type RNA polymerase [Nicotiana sylvestris]
Length = 1020
Score = 1100 bits (2846), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 509/777 (65%), Positives = 640/777 (82%), Gaps = 5/777 (0%)
Query: 170 MKKRKFNLLRRRQVKQETEAWERMVDEYKELEAKMIEKRLAPNLPHIKGLFLGWFGPLSE 229
M RK+ L+RRQVK ETEAWE+ EYKEL M E++LAPNLP++K LFLGWF PL +
Sbjct: 177 MGHRKYQTLKRRQVKVETEAWEQAAKEYKELLFDMCEQKLAPNLPYVKSLFLGWFEPLRD 236
Query: 230 AIEREQKMQRTKKQKAAYAPHIELLPADKVAVIVMHKMMGLVMAGHEDRCVQVVQAAVHI 289
I EQ++ K KAAYA + LPAD +AVI MHK+MGL+M G + +VVQAA+ I
Sbjct: 237 KIAEEQELCSQGKSKAAYAKYFYQLPADMMAVITMHKLMGLLMTGGDHGTARVVQAALVI 296
Query: 290 GMAIEQEIRIHSFLEKTKNYK--RKKIIADTEEVLSKEKELLRKRVNSLIKSKRVMEAQK 347
G AIEQE+RIH+FLEKTK K + K D E V ++E+E LRK+V +L+K +++ +
Sbjct: 297 GDAIEQEVRIHNFLEKTKKQKAEKDKQKEDGEHV-TQEQEKLRKKVTNLMKKQKLRAVGQ 355
Query: 348 LLK-NEETKPWGRDTQAKLGSRLVELLIETAYVQHPVNPADYSPPDVRPAFRHRFKTILK 406
+++ +++KPWG+D +AK+GSRL++LL++TAY+Q P N PPD+RPAF H +T+ K
Sbjct: 356 IVRRQDDSKPWGQDARAKVGSRLIDLLLQTAYIQPPANQLAVDPPDIRPAFVHSVRTVAK 415
Query: 407 HPGQKTTKRYGVVECDPLVLEGLDRSAKHMLIPYVPMLVPPKKWKGYNKGGYLFLPSYVM 466
+ ++RYG+++CD LV +GL+R+A+HM+IPY+PMLVPP KW GY+KGG+L+LPSYVM
Sbjct: 416 ET-KSASRRYGIIQCDELVFKGLERTARHMVIPYMPMLVPPVKWTGYDKGGHLYLPSYVM 474
Query: 467 RTHGSRKQQEALKSVTGNCMKKVFEALDTLGSTKWRVNKQVLSVLESIWVSGGNIAGLVD 526
RTHG+R+Q+EA+K + N ++ VFEALDTLG+TKWR+NK+VLSV++ IW GG +A LVD
Sbjct: 475 RTHGARQQREAVKRASRNQLQPVFEALDTLGNTKWRINKRVLSVVDRIWAGGGRLADLVD 534
Query: 527 RNDVLIPEKPLSEDMTEVQKWKWSVRKAKKINQERHSQRCDTELKLSVARRMKDEEGFYY 586
R+D +PE+P +ED KW+W V+ KK N+ERHSQRCD ELKL+VAR+MKDEE F+Y
Sbjct: 535 RDDAPLPEEPDTEDEALRTKWRWKVKSVKKENRERHSQRCDIELKLAVARKMKDEESFFY 594
Query: 587 PHNLDFRGRAYPMHPHLNHLSSDVCRGVLEFAEGRPLGKSGLRWLKIHLANLFSGGVEKL 646
PHN+DFRGRAYPMHPHLNHL SD+CRGVLEFAEGRPLG+SGLRWLKIHLANLF+GGVEKL
Sbjct: 595 PHNVDFRGRAYPMHPHLNHLGSDICRGVLEFAEGRPLGESGLRWLKIHLANLFAGGVEKL 654
Query: 647 SHDGRLAFVENHLYEIFDSAENPINGSRWWLTAEDPFQCLAACINLSEALKSSSPHSVIS 706
S +GR+ F ENH+ +IFDS++ P+ G RWWL AEDPFQCLA CINLSEA++SSSP + +S
Sbjct: 655 SLEGRIGFTENHMDDIFDSSDKPLEGRRWWLNAEDPFQCLAVCINLSEAVRSSSPETSVS 714
Query: 707 HLPIHQDGSCNGLQHYAALGRNTLEAAAVNLVAGEKPADVYSEIAVRVHEIMKRDSNKDP 766
H+P+HQDGSCNGLQHYAALGR+ L AAAVNLVAGEKPADVYS IA RV +IMKRD+ +DP
Sbjct: 715 HIPVHQDGSCNGLQHYAALGRDKLGAAAVNLVAGEKPADVYSGIAARVLDIMKRDAQRDP 774
Query: 767 SKHPQALLAKILIDQVDRKLVKQTVMTSVYGVTFVGAREQIKRRLEEKGHITDDRQLFAA 826
++ P A+ A++L++QVDRKLVKQTVMTSVYGVT++GAR+QIKRRL+E+G I DD +LF A
Sbjct: 775 AEFPDAVRARVLVNQVDRKLVKQTVMTSVYGVTYIGARDQIKRRLKERGAIADDSELFGA 834
Query: 827 ACYAAKVTLTALGEIFEAARSIMGWLGDCAKVIASENQPVRWTTPLGLPVVQPYCKNERH 886
ACYAAKVTLTALGE+FEAARSIM WLG+CAK+IASEN+PVRWTTPLGLPVVQPY K RH
Sbjct: 835 ACYAAKVTLTALGEMFEAARSIMTWLGECAKIIASENEPVRWTTPLGLPVVQPYRKIGRH 894
Query: 887 LIRTSLQVLALQREGNLVKIRKQRTAFPPNFVHSLDGSHMMMTAVACRDAGLHFAGL 943
LI+TSLQ+L LQRE V +++QRTAFPPNF+HSLDGSHMMMTAVACR AGL+FAG+
Sbjct: 895 LIKTSLQILTLQRETEKVMVKRQRTAFPPNFIHSLDGSHMMMTAVACRRAGLNFAGV 951
>gi|17221593|dbj|BAB78464.1| T7 bacteriophage-type single subunit RNA polymerase [Nicotiana
sylvestris]
gi|17221595|dbj|BAB78465.1| T7 bacteriophage-type single subunit RNA polymerase [Nicotiana
sylvestris]
Length = 1020
Score = 1094 bits (2830), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 506/777 (65%), Positives = 639/777 (82%), Gaps = 5/777 (0%)
Query: 170 MKKRKFNLLRRRQVKQETEAWERMVDEYKELEAKMIEKRLAPNLPHIKGLFLGWFGPLSE 229
M RK+ L+RRQVK ETEAWE+ EYKEL M E++LAPNLP++K LFLGWF PL +
Sbjct: 177 MGHRKYQTLKRRQVKVETEAWEQAAKEYKELLFDMCEQKLAPNLPYVKSLFLGWFEPLRD 236
Query: 230 AIEREQKMQRTKKQKAAYAPHIELLPADKVAVIVMHKMMGLVMAGHEDRCVQVVQAAVHI 289
I EQ++ K KAAYA + LPAD +AVI MHK+MGL+M G + +VVQAA+ I
Sbjct: 237 KIAEEQELCSQGKSKAAYAKYFYQLPADMMAVITMHKLMGLLMTGGDHGTARVVQAALVI 296
Query: 290 GMAIEQEIRIHSFLEKTKNYK--RKKIIADTEEVLSKEKELLRKRVNSLIKSKRVMEAQK 347
G AIEQE+RIH+FLEKTK K + K D E V ++E+E LRK+V +L+K +++ +
Sbjct: 297 GDAIEQEVRIHNFLEKTKKQKAEKDKQKEDGEHV-TQEQEKLRKKVTNLMKKQKLRAVGQ 355
Query: 348 LLK-NEETKPWGRDTQAKLGSRLVELLIETAYVQHPVNPADYSPPDVRPAFRHRFKTILK 406
+++ +++KPWG+D +AK+GSRL++LL++TAY+Q P N PPD+ PAF H +T+ K
Sbjct: 356 IVRRQDDSKPWGQDARAKVGSRLIDLLLQTAYIQPPANQLAVDPPDIPPAFVHSVRTVAK 415
Query: 407 HPGQKTTKRYGVVECDPLVLEGLDRSAKHMLIPYVPMLVPPKKWKGYNKGGYLFLPSYVM 466
+ ++RYG+++CD LV +GL+R+A+HM+IPY+PMLVPP KW GY+KGG+L+LPSYVM
Sbjct: 416 ET-KSASRRYGIIQCDELVFKGLERTARHMVIPYMPMLVPPVKWTGYDKGGHLYLPSYVM 474
Query: 467 RTHGSRKQQEALKSVTGNCMKKVFEALDTLGSTKWRVNKQVLSVLESIWVSGGNIAGLVD 526
RTHG+R+Q+EA+K + N ++ VFEALDTLG+TKWR+NK+VLSV++ IW GG +A LVD
Sbjct: 475 RTHGARQQREAVKRASRNQLQPVFEALDTLGNTKWRINKRVLSVVDRIWAGGGRLADLVD 534
Query: 527 RNDVLIPEKPLSEDMTEVQKWKWSVRKAKKINQERHSQRCDTELKLSVARRMKDEEGFYY 586
R+D +PE+P +ED + KW+W V+ KK N+ERHSQRCD ELKL+VAR+MKDEE F+Y
Sbjct: 535 RDDAPLPEEPDTEDEALLPKWRWKVKSVKKENRERHSQRCDIELKLAVARKMKDEESFFY 594
Query: 587 PHNLDFRGRAYPMHPHLNHLSSDVCRGVLEFAEGRPLGKSGLRWLKIHLANLFSGGVEKL 646
PHN+DFRGRAYPMHPHLNHL SD+CRGVLEFAEGRPLG+SGLRWLKIHLANLF+GGVEKL
Sbjct: 595 PHNVDFRGRAYPMHPHLNHLGSDICRGVLEFAEGRPLGESGLRWLKIHLANLFAGGVEKL 654
Query: 647 SHDGRLAFVENHLYEIFDSAENPINGSRWWLTAEDPFQCLAACINLSEALKSSSPHSVIS 706
S +GR+ F ENH+ +IFDS++ P+ G RWWL AEDPFQCLA CINLSEA++SSSP + +S
Sbjct: 655 SLEGRIGFTENHMDDIFDSSDKPLEGRRWWLNAEDPFQCLAVCINLSEAVRSSSPETSVS 714
Query: 707 HLPIHQDGSCNGLQHYAALGRNTLEAAAVNLVAGEKPADVYSEIAVRVHEIMKRDSNKDP 766
H+P+HQDGSCNGLQHYAALGR+ L AAAVNLVAGEKPA+ YS IA RV +IMKRD+ +DP
Sbjct: 715 HIPVHQDGSCNGLQHYAALGRDKLGAAAVNLVAGEKPAEAYSGIAARVLDIMKRDAQRDP 774
Query: 767 SKHPQALLAKILIDQVDRKLVKQTVMTSVYGVTFVGAREQIKRRLEEKGHITDDRQLFAA 826
++ P A+ A++L++QVDRKLVKQTVMTSVYGVT++GAR+QIKRRL+E+G I DD +LF A
Sbjct: 775 AEFPDAVRARVLVNQVDRKLVKQTVMTSVYGVTYIGARDQIKRRLKERGAIADDSELFGA 834
Query: 827 ACYAAKVTLTALGEIFEAARSIMGWLGDCAKVIASENQPVRWTTPLGLPVVQPYCKNERH 886
ACYAAKVTLTALGE+FEAARSIM WLG+CAK+IASEN+PVRWTTPLGLPVVQPY K RH
Sbjct: 835 ACYAAKVTLTALGEMFEAARSIMTWLGECAKIIASENEPVRWTTPLGLPVVQPYRKIGRH 894
Query: 887 LIRTSLQVLALQREGNLVKIRKQRTAFPPNFVHSLDGSHMMMTAVACRDAGLHFAGL 943
LI+TSLQ+L LQRE V +++QRTAFPPNF+HSLDGSHMMMTAVACR AGL+FAG+
Sbjct: 895 LIKTSLQILTLQRETEKVMVKRQRTAFPPNFIHSLDGSHMMMTAVACRRAGLNFAGV 951
>gi|357155565|ref|XP_003577161.1| PREDICTED: DNA-directed RNA polymerase 2,
chloroplastic/mitochondrial-like [Brachypodium
distachyon]
Length = 992
Score = 1091 bits (2821), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 510/778 (65%), Positives = 637/778 (81%), Gaps = 5/778 (0%)
Query: 170 MKKRKFNLLRRRQVKQETEAWERMVDEYKELEAKMIEKRLAPNLPHIKGLFLGWFGPLSE 229
M K+ LR+RQV+ ETEAWE+ EY+EL A M E +LAPNLP++K LFLGWF PL +
Sbjct: 147 MGSSKYAALRQRQVRIETEAWEQAAKEYRELLADMCEHKLAPNLPYVKSLFLGWFEPLRD 206
Query: 230 AIEREQKMQRTKKQKAAYAPHIELLPADKVAVIVMHKMMGLVMAGHEDRCVQVVQAAVHI 289
I EQ++ + +A++AP+ +LPAD +AVI MHK+MGL+M G D V+V+QAA I
Sbjct: 207 QIIAEQELVGERGARASHAPYFNMLPADMMAVITMHKLMGLLMTGSGDGSVRVIQAACQI 266
Query: 290 GMAIEQEIRIHSFLEKTKNYKR---KKIIADTEEVLSKEKELLRKRVNSLIKSKRVMEAQ 346
G AIE E+RIH FLEKTK ++ + ++KE++ LRK+V L+K +++ + +
Sbjct: 267 GEAIEHEVRIHKFLEKTKKKNTKEVDNVVEAGDSDIAKEQQRLRKKVTDLMKKQKIRQVR 326
Query: 347 KLLKNEE-TKPWGRDTQAKLGSRLVELLIETAYVQHPVNPADYSPPDVRPAFRHRFKTIL 405
++K ++ T+PWG+D AK+GSRL+ELLIETA++Q PV+ + S PD+RPAF H +T+
Sbjct: 327 NIVKKQDSTRPWGQDAHAKVGSRLIELLIETAHIQPPVSQSADSTPDIRPAFTHEMRTVT 386
Query: 406 KHPGQKTTKRYGVVECDPLVLEGLDRSAKHMLIPYVPMLVPPKKWKGYNKGGYLFLPSYV 465
+ QK+++RYGV++CDPL+ +GLDR+AKHM+IPY+PML+PP W GY+KG +LFLPSYV
Sbjct: 387 RE-QQKSSRRYGVIKCDPLIRQGLDRTAKHMVIPYMPMLIPPISWTGYDKGAHLFLPSYV 445
Query: 466 MRTHGSRKQQEALKSVTGNCMKKVFEALDTLGSTKWRVNKQVLSVLESIWVSGGNIAGLV 525
MRTHG+R+Q+EA+K M+ +FEALDTLGSTKWR+NK+VLS+++ IW SGG +A LV
Sbjct: 446 MRTHGARQQREAVKKAPKEQMQLIFEALDTLGSTKWRINKKVLSIVDRIWSSGGRLADLV 505
Query: 526 DRNDVLIPEKPLSEDMTEVQKWKWSVRKAKKINQERHSQRCDTELKLSVARRMKDEEGFY 585
DR DV +PEKP +ED TE++KW+W++R KK N ERHSQRCD ELKL+VAR+MKDE GFY
Sbjct: 506 DRTDVALPEKPDTEDETELKKWRWNLRSVKKENSERHSQRCDVELKLAVARKMKDEVGFY 565
Query: 586 YPHNLDFRGRAYPMHPHLNHLSSDVCRGVLEFAEGRPLGKSGLRWLKIHLANLFSGGVEK 645
YPHNLDFRGRAYPMHP+LNHL SD+CRGVLEF+EGRPLG SGL WLKIHLANL++GGV+K
Sbjct: 566 YPHNLDFRGRAYPMHPYLNHLGSDLCRGVLEFSEGRPLGDSGLCWLKIHLANLYAGGVDK 625
Query: 646 LSHDGRLAFVENHLYEIFDSAENPINGSRWWLTAEDPFQCLAACINLSEALKSSSPHSVI 705
LS+DGR+AF ENHL +IFDSA P+ G RWWL AEDPFQCLA C++L+EAL+SSSP ++I
Sbjct: 626 LSYDGRIAFTENHLEDIFDSANRPLEGKRWWLGAEDPFQCLAVCMDLTEALRSSSPEAMI 685
Query: 706 SHLPIHQDGSCNGLQHYAALGRNTLEAAAVNLVAGEKPADVYSEIAVRVHEIMKRDSNKD 765
SH+P+HQDGSCNGLQHYAALGR+ L A AVNLV+GEKPADVYS IA RV EIM+RD+ KD
Sbjct: 686 SHIPVHQDGSCNGLQHYAALGRDKLGAIAVNLVSGEKPADVYSGIATRVVEIMRRDAQKD 745
Query: 766 PSKHPQALLAKILIDQVDRKLVKQTVMTSVYGVTFVGAREQIKRRLEEKGHITDDRQLFA 825
P+ P A A++L+DQVDRKLVKQTVMTSVYGVT+VGAREQIKRRL+E+G I DD +LFA
Sbjct: 746 PALDPDAARARLLVDQVDRKLVKQTVMTSVYGVTYVGAREQIKRRLKERGVIGDDSELFA 805
Query: 826 AACYAAKVTLTALGEIFEAARSIMGWLGDCAKVIASENQPVRWTTPLGLPVVQPYCKNER 885
A+CYAAKVTLTALGE+FEAARSIM WLGDCAKVIA EN+PVRW TPLGLPVVQPY K R
Sbjct: 806 ASCYAAKVTLTALGEMFEAARSIMNWLGDCAKVIACENEPVRWMTPLGLPVVQPYRKLGR 865
Query: 886 HLIRTSLQVLALQREGNLVKIRKQRTAFPPNFVHSLDGSHMMMTAVACRDAGLHFAGL 943
HLI+TSLQVL LQRE + V +++QRTAFPPNFVHSLDGSHMMMTAVAC GL+FAG+
Sbjct: 866 HLIKTSLQVLTLQRETDKVMVKRQRTAFPPNFVHSLDGSHMMMTAVACNKQGLYFAGV 923
>gi|242046328|ref|XP_002461035.1| hypothetical protein SORBIDRAFT_02g039520 [Sorghum bicolor]
gi|241924412|gb|EER97556.1| hypothetical protein SORBIDRAFT_02g039520 [Sorghum bicolor]
Length = 976
Score = 1086 bits (2809), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 506/779 (64%), Positives = 635/779 (81%), Gaps = 6/779 (0%)
Query: 170 MKKRKFNLLRRRQVKQETEAWERMVDEYKELEAKMIEKRLAPNLPHIKGLFLGWFGPLSE 229
M ++ LRRRQ++ ETEAWE+ EY+EL A M E++LAPNLP+IK LFLGWF PL +
Sbjct: 130 MTYHRYTSLRRRQIRVETEAWEQAAKEYRELLADMCEQKLAPNLPYIKSLFLGWFEPLRD 189
Query: 230 AIEREQKMQRTKKQKAAYAPHIELLPADKVAVIVMHKMMGLVMAGHEDRCVQVVQAAVHI 289
I EQ++ +A++ P+ +LPAD +AVI MHK+MGL+M G D V+V+QAA I
Sbjct: 190 QIVTEQELVADPGSRASHGPYFNMLPADMMAVITMHKLMGLLMTGSGDGSVRVIQAACQI 249
Query: 290 GMAIEQEIRIHSFLEKTKNYKRKKII----ADTEEVLSKEKELLRKRVNSLIKSKRVMEA 345
G AIE E+RI+ FLEKT+ K++ A + ++KE++ LRK+V L+K +++ +
Sbjct: 250 GEAIEHEVRINRFLEKTRKKSNKEMEKEEEAAGDTDIAKEQQRLRKKVTDLMKKQKLRQV 309
Query: 346 QKLLKNEE-TKPWGRDTQAKLGSRLVELLIETAYVQHPVNPADYSPPDVRPAFRHRFKTI 404
+ ++KN++ ++PWG+D QAK+GSRL+EL ++TA++Q P + + PD+RPAFRH +T+
Sbjct: 310 RNIVKNQDNSRPWGQDVQAKVGSRLIELFMDTAHIQPPASQSSDGLPDIRPAFRHEMRTV 369
Query: 405 LKHPGQKTTKRYGVVECDPLVLEGLDRSAKHMLIPYVPMLVPPKKWKGYNKGGYLFLPSY 464
K QK+++RYGV++CDPLV +GLDR+AKHM+IPY+PML+PP W GY+KG +LFLPSY
Sbjct: 370 AKE-QQKSSRRYGVIKCDPLVRQGLDRTAKHMVIPYMPMLIPPICWTGYDKGAHLFLPSY 428
Query: 465 VMRTHGSRKQQEALKSVTGNCMKKVFEALDTLGSTKWRVNKQVLSVLESIWVSGGNIAGL 524
VMRTHG+R+Q+EA+K M+ VFEAL+TLGSTKWRVNK+VLS+++ IW SGG +A L
Sbjct: 429 VMRTHGARQQREAVKRAPREQMQSVFEALNTLGSTKWRVNKRVLSIVDRIWSSGGRLADL 488
Query: 525 VDRNDVLIPEKPLSEDMTEVQKWKWSVRKAKKINQERHSQRCDTELKLSVARRMKDEEGF 584
VDR DV +PEKP +ED T ++ WKW +R KK N ERHSQRCD ELKL+VAR+MKDEEGF
Sbjct: 489 VDRTDVPLPEKPDTEDETLIKNWKWHLRSVKKENSERHSQRCDVELKLAVARKMKDEEGF 548
Query: 585 YYPHNLDFRGRAYPMHPHLNHLSSDVCRGVLEFAEGRPLGKSGLRWLKIHLANLFSGGVE 644
YYPHNLDFRGRAYPMHP+LNHL SD+CRG+LEFAEGRPLGKSGL WLKIHLANL++GGV+
Sbjct: 549 YYPHNLDFRGRAYPMHPYLNHLGSDLCRGILEFAEGRPLGKSGLHWLKIHLANLYAGGVD 608
Query: 645 KLSHDGRLAFVENHLYEIFDSAENPINGSRWWLTAEDPFQCLAACINLSEALKSSSPHSV 704
KLS+DGR+AF ENHL EIFDSA+ P+ G RWWL AEDPFQCLA C+NL+EAL+SSSP +
Sbjct: 609 KLSYDGRVAFTENHLEEIFDSADRPLEGKRWWLGAEDPFQCLAVCMNLTEALRSSSPETT 668
Query: 705 ISHLPIHQDGSCNGLQHYAALGRNTLEAAAVNLVAGEKPADVYSEIAVRVHEIMKRDSNK 764
ISH+P+HQDGSCNGLQHYAALGR+ L A AVNLVAGEKPADVY+ IA RV EIM+ D+ K
Sbjct: 669 ISHIPVHQDGSCNGLQHYAALGRDKLGAIAVNLVAGEKPADVYTGIATRVLEIMRMDAQK 728
Query: 765 DPSKHPQALLAKILIDQVDRKLVKQTVMTSVYGVTFVGAREQIKRRLEEKGHITDDRQLF 824
DPS P A++++DQVDRKLVKQTVMTSVYGVT+VGAR+QIKRRL+E+G I D+ +LF
Sbjct: 729 DPSIDPDVARARLIVDQVDRKLVKQTVMTSVYGVTYVGARDQIKRRLKERGVIPDEAELF 788
Query: 825 AAACYAAKVTLTALGEIFEAARSIMGWLGDCAKVIASENQPVRWTTPLGLPVVQPYCKNE 884
A+CYAAKVTLTALGE+F+AAR IM WLGDCAKVIA EN+PVRWTTPLGLPVVQPY K
Sbjct: 789 GASCYAAKVTLTALGEMFQAARGIMNWLGDCAKVIACENEPVRWTTPLGLPVVQPYRKLG 848
Query: 885 RHLIRTSLQVLALQREGNLVKIRKQRTAFPPNFVHSLDGSHMMMTAVACRDAGLHFAGL 943
RHLI+TSLQVL LQRE + V +++QRTAFPPNFVHSLDGSHMMMTAVAC+ GL+FAG+
Sbjct: 849 RHLIKTSLQVLTLQRETDKVMVKRQRTAFPPNFVHSLDGSHMMMTAVACKRQGLNFAGV 907
>gi|225451858|ref|XP_002278535.1| PREDICTED: DNA-directed RNA polymerase 2,
chloroplastic/mitochondrial [Vitis vinifera]
gi|298204431|emb|CBI16911.3| unnamed protein product [Vitis vinifera]
Length = 1035
Score = 1085 bits (2807), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 524/792 (66%), Positives = 651/792 (82%), Gaps = 12/792 (1%)
Query: 160 KRIKLQEYREMKKRKFNLLRRRQVKQETEAWERMVDEYKELEAKMIEKRLAPNLPHIKGL 219
+R KL+ R M++ ++ LRRRQVK ETEAWE EYKEL M E++LAPNLP++K L
Sbjct: 179 RREKLKMERGMEQGRYLRLRRRQVKIETEAWELAAKEYKELLMDMCEQKLAPNLPYMKSL 238
Query: 220 FLGWFGPLSEAIEREQKMQRTKKQKAAYAPHIELLPADKVAVIVMHKMMGLVMAGHEDRC 279
FLGWF PL +AI +EQ++ R K KAAYAP+ + LPAD ++VI MHK++GL+M G E
Sbjct: 239 FLGWFEPLRDAIVKEQELCRLGKNKAAYAPYFDQLPADMMSVITMHKLVGLLMTGGEHGS 298
Query: 280 VQVVQAAVHIGMAIEQEIRIHSFLEKTKNYKRKKIIADTE------EVLSKEKELLRKRV 333
+VVQAA IG AIEQE+RIH+FLEKTK RKK+ D + + E+E LRK+V
Sbjct: 299 TRVVQAACVIGDAIEQEVRIHNFLEKTK---RKKVGKDKNVEGGGFDPVIHEQEKLRKKV 355
Query: 334 NSLIKSKRVMEAQKLLK-NEETKPWGRDTQAKLGSRLVELLIETAYVQHPV-NPADYSPP 391
+L+K +++ A++++K ++ +KPWG + +AK+GSRL+ELL++TAY+Q PV N +PP
Sbjct: 356 TNLMKKQKLHAARQIVKGHDNSKPWGPEAKAKVGSRLIELLMQTAYIQPPVDNQLADTPP 415
Query: 392 DVRPAFRHRFKTILKHPGQKTTKRYGVVECDPLVLEGLDRSAKHMLIPYVPMLVPPKKWK 451
D+RPAF H FKT+++ +K +R+GV+ECDPLV +GL+R+A+HM+IPYVPMLVPP KW
Sbjct: 416 DIRPAFVHTFKTVMRE-AKKIGRRFGVIECDPLVKKGLERTARHMVIPYVPMLVPPLKWT 474
Query: 452 GYNKGGYLFLPSYVMRTHGSRKQQEALKSVTGNCMKKVFEALDTLGSTKWRVNKQVLSVL 511
GY+KG +LFLPSYVMRTHG+R+Q+EA+K N ++ VFEAL+TLG+TKWR+NK++ V+
Sbjct: 475 GYDKGAHLFLPSYVMRTHGARQQREAVKRAPRNQLEPVFEALNTLGNTKWRINKRLFDVV 534
Query: 512 ESIWVSGGNIAGLVDRNDVLIPEKPLSEDMTEVQKWKWSVRKAKKINQERHSQRCDTELK 571
+ IW GG +A LVDRNDV +PEKP +ED +++KWKW V+ KK N ERHSQRCD ELK
Sbjct: 535 DRIWAGGGCLADLVDRNDVPLPEKPDTEDEAQLRKWKWKVKSVKKANSERHSQRCDIELK 594
Query: 572 LSVARRMKDEEGFYYPHNLDFRGRAYPMHPHLNHLSSDVCRGVLEFAEGRPLGKSGLRWL 631
L+VAR+MKDE+GF+YPHNLDFRGRAYPMHP+LNHL SD+CRG+LEFAEGRPLG SGL WL
Sbjct: 595 LAVARKMKDEDGFFYPHNLDFRGRAYPMHPYLNHLGSDLCRGILEFAEGRPLGSSGLHWL 654
Query: 632 KIHLANLFSGGVEKLSHDGRLAFVENHLYEIFDSAENPINGSRWWLTAEDPFQCLAACIN 691
KIHLANLF+GGV+KLSH+GR+ F ENHL +IFDSA+ P+ G RWWL AEDPFQ LAACIN
Sbjct: 655 KIHLANLFAGGVDKLSHEGRITFTENHLDDIFDSADRPLEGKRWWLNAEDPFQFLAACIN 714
Query: 692 LSEALKSSSPHSVISHLPIHQDGSCNGLQHYAALGRNTLEAAAVNLVAGEKPADVYSEIA 751
LSEAL+SSSP + ISH+P+HQDGSCNGLQHYAALGR+ L A AVNLVAGEKPADVYS IA
Sbjct: 715 LSEALRSSSPETTISHIPVHQDGSCNGLQHYAALGRDQLGATAVNLVAGEKPADVYSGIA 774
Query: 752 VRVHEIMKRDSNKDPSKHPQALLAKILIDQVDRKLVKQTVMTSVYGVTFVGAREQIKRRL 811
RV +IMKRD+ KDP+ P AL A+ILI+QVDRKLVKQTVMTSVYGVT++GAR+QIKRRL
Sbjct: 775 ARVLDIMKRDAEKDPAIFPDALRARILINQVDRKLVKQTVMTSVYGVTYIGARDQIKRRL 834
Query: 812 EEKGHITDDRQLFAAACYAAKVTLTALGEIFEAARSIMGWLGDCAKVIASENQPVRWTTP 871
+E+ I DD +LF AACYAAK+TLTALGE+F+AARSIM WLGDCAK+IASENQPVRWTTP
Sbjct: 835 KERNAIADDVELFGAACYAAKITLTALGEMFQAARSIMSWLGDCAKIIASENQPVRWTTP 894
Query: 872 LGLPVVQPYCKNERHLIRTSLQVLALQREGNLVKIRKQRTAFPPNFVHSLDGSHMMMTAV 931
LGLPVVQPY K RHLI+TSLQVL LQRE + +++QRTAFPPNFVHSLDGSHMMMTA+
Sbjct: 895 LGLPVVQPYRKLGRHLIKTSLQVLTLQRETETIMVKRQRTAFPPNFVHSLDGSHMMMTAI 954
Query: 932 ACRDAGLHFAGL 943
AC+ AGL+FAG+
Sbjct: 955 ACKKAGLNFAGV 966
>gi|414887624|tpg|DAA63638.1| TPA: RNA polymerase T phage-like 1 [Zea mays]
Length = 975
Score = 1081 bits (2795), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 504/780 (64%), Positives = 636/780 (81%), Gaps = 9/780 (1%)
Query: 170 MKKRKFNLLRRRQVKQETEAWERMVDEYKELEAKMIEKRLAPNLPHIKGLFLGWFGPLSE 229
M ++ LRRRQ++ ETEAWE+ +EY+EL A M E++LAPNLP++K LFLGWF PL +
Sbjct: 130 MTYHRYTSLRRRQIRIETEAWEQAANEYRELLADMCEQKLAPNLPYVKSLFLGWFEPLRD 189
Query: 230 AIEREQKMQRTKKQKAAYAPHIELLPADKVAVIVMHKMMGLVMAGHEDRCVQVVQAAVHI 289
I EQ++ +A++ P +LPAD +AVI MHK+MGL+M G D V+V+QAA I
Sbjct: 190 QIATEQELVADPGSRASHGPFFSMLPADMMAVITMHKLMGLLMTGSGDGSVRVIQAACQI 249
Query: 290 GMAIEQEIRIHSFLEKTKNYKRKKI-----IADTEEVLSKEKELLRKRVNSLIKSKRVME 344
G AIE E+RI+ FLEKT+ K++ DT ++ E++ LRK+V L+K +++ +
Sbjct: 250 GEAIEHEVRINRFLEKTRKKNNKEMENEEEAGDTN--IAIEQQRLRKKVTDLMKKQKLRQ 307
Query: 345 AQKLLKNEE-TKPWGRDTQAKLGSRLVELLIETAYVQHPVNPADYSPPDVRPAFRHRFKT 403
+ ++KN++ ++PWG+D AK+GSRL++L I TA++Q P + + PD+RPAFRH +T
Sbjct: 308 VRNIVKNQDKSRPWGQDAHAKVGSRLIDLFIGTAHIQPPASQSSDGLPDIRPAFRHEMRT 367
Query: 404 ILKHPGQKTTKRYGVVECDPLVLEGLDRSAKHMLIPYVPMLVPPKKWKGYNKGGYLFLPS 463
++K QK+++RYGV++CDPLV +GLDR+AKHM+IPY+PML+PP W GY+KG +LFLPS
Sbjct: 368 MVKE-QQKSSRRYGVIKCDPLVRQGLDRTAKHMVIPYMPMLIPPICWTGYDKGAHLFLPS 426
Query: 464 YVMRTHGSRKQQEALKSVTGNCMKKVFEALDTLGSTKWRVNKQVLSVLESIWVSGGNIAG 523
YVMRTHG+R+Q++A+K M+ VFEAL+TLGSTKWRVNK+VLS+++ IW +GG +A
Sbjct: 427 YVMRTHGARQQRDAVKRAPREQMQFVFEALNTLGSTKWRVNKRVLSIVDRIWSNGGRLAD 486
Query: 524 LVDRNDVLIPEKPLSEDMTEVQKWKWSVRKAKKINQERHSQRCDTELKLSVARRMKDEEG 583
LVDR DV +PEKP +ED T ++ WKW +R AKK N ERHSQRCD ELKL+VAR+MKDEEG
Sbjct: 487 LVDRTDVPVPEKPDTEDETLLKNWKWHLRAAKKKNSERHSQRCDVELKLAVARKMKDEEG 546
Query: 584 FYYPHNLDFRGRAYPMHPHLNHLSSDVCRGVLEFAEGRPLGKSGLRWLKIHLANLFSGGV 643
FYYPHNLDFRGRAYPMHP+LNHL SD+CRGVLEFAEGRPLGKSGLRWLKIHLANL++ GV
Sbjct: 547 FYYPHNLDFRGRAYPMHPYLNHLGSDLCRGVLEFAEGRPLGKSGLRWLKIHLANLYAAGV 606
Query: 644 EKLSHDGRLAFVENHLYEIFDSAENPINGSRWWLTAEDPFQCLAACINLSEALKSSSPHS 703
+KLS+DGR+AF ENHL EIFDSA+ P+ G RWWL AEDPFQCLA C+NL+EAL+SSSP +
Sbjct: 607 DKLSYDGRIAFAENHLEEIFDSADRPLEGRRWWLGAEDPFQCLAVCMNLTEALRSSSPET 666
Query: 704 VISHLPIHQDGSCNGLQHYAALGRNTLEAAAVNLVAGEKPADVYSEIAVRVHEIMKRDSN 763
ISH+P+HQDGSCNGLQHYAALG++ L A AVNLVAGEKPADVY+ IA RV EIM+ D+
Sbjct: 667 TISHIPVHQDGSCNGLQHYAALGKDKLGAIAVNLVAGEKPADVYTGIANRVMEIMRMDAQ 726
Query: 764 KDPSKHPQALLAKILIDQVDRKLVKQTVMTSVYGVTFVGAREQIKRRLEEKGHITDDRQL 823
KDPS P A A++++DQVDRKLVKQTVMTSVYGVT++GAREQI+RRL+E+G I +D +L
Sbjct: 727 KDPSVEPDAARARLIVDQVDRKLVKQTVMTSVYGVTYIGAREQIRRRLKERGVIPNDSEL 786
Query: 824 FAAACYAAKVTLTALGEIFEAARSIMGWLGDCAKVIASENQPVRWTTPLGLPVVQPYCKN 883
F A+CYAAKVTLTALGE+F+AARSIM WLGDCAKVIA EN+PVRWTTPLGLPVVQPY K
Sbjct: 787 FGASCYAAKVTLTALGEMFQAARSIMNWLGDCAKVIACENEPVRWTTPLGLPVVQPYRKL 846
Query: 884 ERHLIRTSLQVLALQREGNLVKIRKQRTAFPPNFVHSLDGSHMMMTAVACRDAGLHFAGL 943
RHLI+TSLQVL LQRE + V +++QRTAFPPNFVHSLDGSHMMMTAVAC+ GL+FAG+
Sbjct: 847 GRHLIKTSLQVLTLQRETDKVMVKRQRTAFPPNFVHSLDGSHMMMTAVACKRQGLNFAGV 906
>gi|224099265|ref|XP_002311418.1| predicted protein [Populus trichocarpa]
gi|222851238|gb|EEE88785.1| predicted protein [Populus trichocarpa]
Length = 877
Score = 1075 bits (2779), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 506/783 (64%), Positives = 641/783 (81%), Gaps = 17/783 (2%)
Query: 174 KFNLLRRRQVKQETEAWERMVDEYKELEAKMIEKRLAPNLPHIKGLFLGWFGPLSEAIER 233
K+ +L+RRQ+K ETEAWE+ EY+E+ M E++LAPNLP++K LFLGWF PL +AI
Sbjct: 30 KYAILKRRQIKMETEAWEQAAQEYQEMLEDMCEQKLAPNLPYVKSLFLGWFEPLRDAIVA 89
Query: 234 EQKMQRTKKQKAAYAPHIELLPADKVAVIVMHKMMGLVMAGHEDRC-VQVVQAAVHIGMA 292
EQ++ + + + ++ H LPAD +AVI MHK+MGL+M G+ ++VVQAA +G A
Sbjct: 90 EQELCK-RNLRVSHRAHFSDLPADMMAVITMHKLMGLLMTGNGGSASIRVVQAASVVGEA 148
Query: 293 IEQEIRIHSFLEKTKNYKRKKI---IADTE--------EVLSKEKELLRKRVNSLIKSKR 341
IE E RIH FLEKTK KRK + I++ E E LSKE+E LRK+V +LIK ++
Sbjct: 149 IEHEGRIHKFLEKTK--KRKNVEAKISEGESDAAIEEGEKLSKEQEKLRKKVTTLIKKQK 206
Query: 342 VMEAQKLLK-NEETKPWGRDTQAKLGSRLVELLIETAYVQHPVNPADYSPPDVRPAFRHR 400
V + ++++K +++++PWG++ K+GSRL++L+IETAY+Q P++ PPD+RPAF H
Sbjct: 207 VQQVRRIVKGHDDSRPWGQEEHVKVGSRLIQLMIETAYIQPPIDQIGDGPPDIRPAFVHT 266
Query: 401 FKTILKHPGQKTTKRYGVVECDPLVLEGLDRSAKHMLIPYVPMLVPPKKWKGYNKGGYLF 460
KTI K QK+++RYGV+ECDPLV +GL++SA+HM+IPY+PMLVPP W GY++G +LF
Sbjct: 267 LKTITKDT-QKSSRRYGVIECDPLVRKGLEKSARHMVIPYMPMLVPPLNWTGYDQGAHLF 325
Query: 461 LPSYVMRTHGSRKQQEALKSVTGNCMKKVFEALDTLGSTKWRVNKQVLSVLESIWVSGGN 520
LPSYVMR HGS++Q++A+K + N ++ VF+ALDTLG+TKWR+NK+VL V++ IW SGG+
Sbjct: 326 LPSYVMRIHGSKQQRDAVKRASRNQLEPVFKALDTLGNTKWRINKRVLVVVDRIWASGGH 385
Query: 521 IAGLVDRNDVLIPEKPLSEDMTEVQKWKWSVRKAKKINQERHSQRCDTELKLSVARRMKD 580
+AGLVDR D +PE+P +ED E++KW W VR KK N ERHSQRCD ELKL+VAR+MKD
Sbjct: 386 LAGLVDREDAPLPEEPQTEDEAEIRKWTWKVRSVKKENSERHSQRCDIELKLAVARKMKD 445
Query: 581 EEGFYYPHNLDFRGRAYPMHPHLNHLSSDVCRGVLEFAEGRPLGKSGLRWLKIHLANLFS 640
EEGFYYPHNLDFRGRAYPMHP+LNHL SDVCRG+LEFAEGRPLGKSGLRWLKIHLANL++
Sbjct: 446 EEGFYYPHNLDFRGRAYPMHPYLNHLGSDVCRGILEFAEGRPLGKSGLRWLKIHLANLYA 505
Query: 641 GGVEKLSHDGRLAFVENHLYEIFDSAENPINGSRWWLTAEDPFQCLAACINLSEALKSSS 700
GGV+KLS+DGR++F ENHL +IFDSA+ P+ G RWWL AEDPFQCLAACINLSEAL+S S
Sbjct: 506 GGVDKLSYDGRISFTENHLDDIFDSADQPLEGRRWWLGAEDPFQCLAACINLSEALRSPS 565
Query: 701 PHSVISHLPIHQDGSCNGLQHYAALGRNTLEAAAVNLVAGEKPADVYSEIAVRVHEIMKR 760
P + SH P+HQDGSCNGLQHYAALGR+ L AAAVNLV GEKPADVYS IA RV +IM+R
Sbjct: 566 PETATSHTPVHQDGSCNGLQHYAALGRDKLGAAAVNLVGGEKPADVYSGIATRVLDIMQR 625
Query: 761 DSNKDPSKHPQALLAKILIDQVDRKLVKQTVMTSVYGVTFVGAREQIKRRLEEKGHITDD 820
D+ KDP+ +P ++ AK+L++QVDRKLVKQTVMTSVYGVT++GAR+QIKRRL+E+ I DD
Sbjct: 626 DAEKDPAINPNSVHAKLLVNQVDRKLVKQTVMTSVYGVTYIGARDQIKRRLKERCIIADD 685
Query: 821 RQLFAAACYAAKVTLTALGEIFEAARSIMGWLGDCAKVIASENQPVRWTTPLGLPVVQPY 880
QL++AACYAAK TL AL E+FE AR IM WLG+CAKVIASENQPVRWTTPLGLPVVQPY
Sbjct: 686 PQLYSAACYAAKTTLMALEEMFEGARGIMAWLGECAKVIASENQPVRWTTPLGLPVVQPY 745
Query: 881 CKNERHLIRTSLQVLALQREGNLVKIRKQRTAFPPNFVHSLDGSHMMMTAVACRDAGLHF 940
+ RHLI+TSLQVL L+RE + V +++QRTAFPPNFVHSLDGSHMMMTAVAC++AGL+F
Sbjct: 746 RQLGRHLIKTSLQVLTLKRETDKVMVKRQRTAFPPNFVHSLDGSHMMMTAVACKEAGLNF 805
Query: 941 AGL 943
AG+
Sbjct: 806 AGV 808
>gi|162457737|ref|NP_001104931.1| RNA polymerase T phage-like 1 [Zea mays]
gi|4559304|gb|AAD22976.1|AF127021_1 T7-like RNA polymerase [Zea mays]
Length = 975
Score = 1074 bits (2777), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 502/780 (64%), Positives = 635/780 (81%), Gaps = 9/780 (1%)
Query: 170 MKKRKFNLLRRRQVKQETEAWERMVDEYKELEAKMIEKRLAPNLPHIKGLFLGWFGPLSE 229
M ++ LRRRQ++ ETEAWE+ +EY+EL A M E++LAPNLP++K LFLGWF PL +
Sbjct: 130 MTYHRYTSLRRRQIRIETEAWEQAANEYRELLADMCEQKLAPNLPYVKSLFLGWFEPLRD 189
Query: 230 AIEREQKMQRTKKQKAAYAPHIELLPADKVAVIVMHKMMGLVMAGHEDRCVQVVQAAVHI 289
I EQ++ +A++ P +LPAD +AVI MHK+MGL+M G D V+V+QAA I
Sbjct: 190 QIATEQELVADPGSRASHGPFFSMLPADMMAVITMHKLMGLLMTGSGDGSVRVIQAACQI 249
Query: 290 GMAIEQEIRIHSFLEKTKNYKRKKI-----IADTEEVLSKEKELLRKRVNSLIKSKRVME 344
G AIE E+RI+ FLEKT+ K++ DT ++ E++ LRK+V L+K +++ +
Sbjct: 250 GEAIEHEVRINRFLEKTRKKNNKEMENEEEAGDTN--IAVEQQRLRKKVTDLMKKQKLRQ 307
Query: 345 AQKLLKNEE-TKPWGRDTQAKLGSRLVELLIETAYVQHPVNPADYSPPDVRPAFRHRFKT 403
+ ++KN++ ++PWG+D AK+GSRL++L I TA++Q P + + PD+RPAFRH +T
Sbjct: 308 VRNIVKNQDKSRPWGQDAHAKVGSRLIDLFIGTAHIQPPASQSSDGLPDIRPAFRHEMRT 367
Query: 404 ILKHPGQKTTKRYGVVECDPLVLEGLDRSAKHMLIPYVPMLVPPKKWKGYNKGGYLFLPS 463
++K QK+++RYGV++CDPLV +GLDR+AKHM+IPY+PML+PP W GY+KG +LFLPS
Sbjct: 368 MVKE-QQKSSRRYGVIKCDPLVRQGLDRTAKHMVIPYMPMLIPPICWTGYDKGAHLFLPS 426
Query: 464 YVMRTHGSRKQQEALKSVTGNCMKKVFEALDTLGSTKWRVNKQVLSVLESIWVSGGNIAG 523
YVMRTHG+R+Q++A+K M+ VFEAL+TLGSTKWRVNK+VLS+++ IW +GG +A
Sbjct: 427 YVMRTHGARQQRDAVKRAPREQMQFVFEALNTLGSTKWRVNKRVLSIVDRIWSNGGRLAD 486
Query: 524 LVDRNDVLIPEKPLSEDMTEVQKWKWSVRKAKKINQERHSQRCDTELKLSVARRMKDEEG 583
LVDR DV +PEKP +ED T ++ WKW +R AKK N ERHSQRCD ELKL+VAR+MKDEEG
Sbjct: 487 LVDRTDVPVPEKPDTEDETLLKNWKWHLRAAKKKNSERHSQRCDVELKLAVARKMKDEEG 546
Query: 584 FYYPHNLDFRGRAYPMHPHLNHLSSDVCRGVLEFAEGRPLGKSGLRWLKIHLANLFSGGV 643
FYYPHNLDFRGRAYPMHP+LNHL SD+CRGVLEFAEGRPLGKSGLRWLKIHLANL++ GV
Sbjct: 547 FYYPHNLDFRGRAYPMHPYLNHLGSDLCRGVLEFAEGRPLGKSGLRWLKIHLANLYAAGV 606
Query: 644 EKLSHDGRLAFVENHLYEIFDSAENPINGSRWWLTAEDPFQCLAACINLSEALKSSSPHS 703
+KLS+DGR+AF ENHL EIFDSA+ P+ G RW L AEDPFQCLA C+NL+EAL+SSSP +
Sbjct: 607 DKLSYDGRIAFAENHLEEIFDSADRPLEGRRWRLGAEDPFQCLAVCMNLTEALRSSSPET 666
Query: 704 VISHLPIHQDGSCNGLQHYAALGRNTLEAAAVNLVAGEKPADVYSEIAVRVHEIMKRDSN 763
ISH+P+HQDGSCNGLQHYAALG++ L A AVNLVAGEKPADVY+ IA RV EIM+ D+
Sbjct: 667 TISHIPVHQDGSCNGLQHYAALGKDKLGAIAVNLVAGEKPADVYTGIANRVMEIMRMDAQ 726
Query: 764 KDPSKHPQALLAKILIDQVDRKLVKQTVMTSVYGVTFVGAREQIKRRLEEKGHITDDRQL 823
KDPS P A A++++DQVDRKLVKQTVMTSVYGVT++GAREQI+RRL+E+G I +D +L
Sbjct: 727 KDPSVEPDAARARLIVDQVDRKLVKQTVMTSVYGVTYIGAREQIRRRLKERGVIPNDSEL 786
Query: 824 FAAACYAAKVTLTALGEIFEAARSIMGWLGDCAKVIASENQPVRWTTPLGLPVVQPYCKN 883
F A+CYAAKVTLTALGE+F+AARSIM WLGDCAKVIA EN+PVRWTTPLGLPVVQPY K
Sbjct: 787 FGASCYAAKVTLTALGEMFQAARSIMNWLGDCAKVIACENEPVRWTTPLGLPVVQPYRKL 846
Query: 884 ERHLIRTSLQVLALQREGNLVKIRKQRTAFPPNFVHSLDGSHMMMTAVACRDAGLHFAGL 943
RHLI+TSLQVL LQRE + V +++Q+TAFPPNFVHSLDGSHMMMTAVAC+ GL+FAG+
Sbjct: 847 GRHLIKTSLQVLTLQRETDKVMVKRQKTAFPPNFVHSLDGSHMMMTAVACKRQGLNFAGV 906
>gi|308026305|emb|CBL87031.1| RNA polymerase [Nuphar advena]
Length = 990
Score = 1073 bits (2776), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 522/863 (60%), Positives = 659/863 (76%), Gaps = 22/863 (2%)
Query: 86 FMENIENSVDFHIPTCEQEQNFHQRVENTETCADLVIPRSENSTNHQLMCLEPRRRIFVQ 145
+ ++EN F C + +F +R + A + + +ST+ +E + + +
Sbjct: 76 YRRSVENQASF---LCFLDDDFRRRAGEMQGFAS--VAEAVSSTDEDTSAIEEIKGLVER 130
Query: 146 DPPWFSSIFLK---GLYKRIKLQEYREMKKRKFNLLRRRQVKQETEAWERMVDEYKELEA 202
FS K G ++ + ++ + K+N L+RRQ+K ETEAWE+ EYKEL
Sbjct: 131 ----FSEEVFKEKEGEFRGKRRTKFGNLGYAKYNALKRRQIKIETEAWEQAAKEYKELMM 186
Query: 203 KMIEKRLAPNLPHIKGLFLGWFGPLSEAIEREQKMQRTKKQKAAYAPHIELLPADKVAVI 262
M + +LA NLP+IK LFLGWF PL + I EQ+ R K +AAY P++ LPA+ +AVI
Sbjct: 187 DMCKNKLAXNLPYIKSLFLGWFEPLRDRIASEQEACRRGKCRAAYGPYLNRLPAEMMAVI 246
Query: 263 VMHKMMGLVMAGHEDRCVQVVQAAVHIGMAIEQEIRIHSFLEKTKNYKRKKIIADTE-EV 321
MHK++GL+M + C +VVQAA IG AIE E RIHSFLEKTK + +A+ E E
Sbjct: 247 TMHKLVGLMMTSGDHGCARVVQAACRIGDAIENESRIHSFLEKTKKKHARGNMAEEEPET 306
Query: 322 LSKEKELLRKRVNSLIKSKRVMEAQKLLKN-EETKPWGRDTQAKLGSRLVELLIETAYVQ 380
++KEKE LRK+V +LIK +++ + KL+K +++ PWG + AK+G L+ELLIETAY+Q
Sbjct: 307 VTKEKEFLRKKVTNLIKKQKLRQVTKLVKGKDDSAPWGVEAHAKVGCHLIELLIETAYIQ 366
Query: 381 HPVNPADYSPPDVRPAFRHRFKTILKHPGQKTTKRYGVVECDPLVLEGLDRSAKHMLIPY 440
P++ PPD+RPAFRH + + K ++RYGV+ECDPLV +GLD++A+H +IPY
Sbjct: 367 PPLDQTVDGPPDIRPAFRHSLRNVSKEQSS-NSRRYGVIECDPLVRKGLDKTARHTVIPY 425
Query: 441 VPMLVPPKKWKGYNKGGYLFLPSYVMRTHGSRKQQEALKSVTGNCMKKVFEALDTLGSTK 500
+PMLVPP W GY+KG +LFLPSY+MRTHGSR+Q+EA+K ++ +FEALDTLGSTK
Sbjct: 426 MPMLVPPLCWTGYDKGAHLFLPSYIMRTHGSRQQREAVKRTPTQQLQSIFEALDTLGSTK 485
Query: 501 WRVNKQVLSVLESIWVSGGNIAGLVDRNDVLIPEKPLSEDMTEVQKWKWSVRKAKKINQE 560
WR+NK++L+V+E IW SGGN+AGLVD D +PEKP +ED ++KWKWS+R KK N E
Sbjct: 486 WRINKRLLAVVERIWASGGNLAGLVDCEDAPLPEKPDTEDEAVLRKWKWSLRNTKKENSE 545
Query: 561 RHSQRCDTELKLSVARRMKDEEGFYYPHNLDFRGRAYPMHPHLNHLSSDVCRGVLEFAEG 620
+HSQRCD ELKLSVAR+MK+EEGFYYPHNLDFRGRAYPMHP+LNHL SD+CRG+LEFAEG
Sbjct: 546 KHSQRCDVELKLSVARKMKEEEGFYYPHNLDFRGRAYPMHPYLNHLGSDLCRGILEFAEG 605
Query: 621 RPLGKSGLRWLKIHLANLFSGGVEKLSHDGRLAFVENHLYEIFDSAENPINGSRWWLTAE 680
RPLGKSGLRWLKIHLANL++GGV+KLS+DGRLAFVENHL +IFDSA+ P+ GSRWWL AE
Sbjct: 606 RPLGKSGLRWLKIHLANLYAGGVDKLSYDGRLAFVENHLDDIFDSADKPLEGSRWWLGAE 665
Query: 681 DPFQCLAACINLSEALKSSSPHSVISHLPIHQDGSCNGLQHYAALGRNTLEAAAVNLVAG 740
DPFQCLAACINLSEAL+SSSP + ISH+P+HQDGSCNGLQHYAALGR+ L AA+VNLVAG
Sbjct: 666 DPFQCLAACINLSEALRSSSPDTTISHVPVHQDGSCNGLQHYAALGRDKLGAASVNLVAG 725
Query: 741 EKPADVYSEIAVRVHEIMKRDSNKDPSKHPQALLAKILIDQVDRKLVKQTVMTSVYGVTF 800
EKPADVYS IA V EIM+RDS KDP+ +P A+ A++LIDQVDRKLVKQTVMTSVYGVT+
Sbjct: 726 EKPADVYSGIASGVLEIMRRDSQKDPANNPSAVRARLLIDQVDRKLVKQTVMTSVYGVTY 785
Query: 801 VGAREQIKRRLEEKGHITDDRQLFAAACYAAKVTLTALGEIFEAARSIMGWLGDCAKVIA 860
+GAR+QIK+RL+E+ I +D Q+F AACYAAK TL AL E+F+AAR IM WLGDCAKVIA
Sbjct: 786 IGARDQIKKRLKERDVIPED-QVFGAACYAAKTTLAALEEMFQAARGIMSWLGDCAKVIA 844
Query: 861 SENQPVRWTTPLGLPVVQPYCKNERHLIRTSLQVLALQREGNLVKIRKQRTAFPPNFVHS 920
SEN+ VRWTTPLGLPVVQPY K R L VLALQ+E + V I++QRTAFPPNFVHS
Sbjct: 845 SENESVRWTTPLGLPVVQPYKKQGRCL------VLALQKETDKVMIKRQRTAFPPNFVHS 898
Query: 921 LDGSHMMMTAVACRDAGLHFAGL 943
LDGSHMMMTA+AC+ GL+FAG+
Sbjct: 899 LDGSHMMMTAIACKKIGLNFAGV 921
>gi|308026128|emb|CBL69149.1| RNA polymerase [Nuphar advena]
Length = 996
Score = 1073 bits (2775), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 514/775 (66%), Positives = 631/775 (81%), Gaps = 12/775 (1%)
Query: 174 KFNLLRRRQVKQETEAWERMVDEYKELEAKMIEKRLAPNLPHIKGLFLGWFGPLSEAIER 233
K+ +RRQ+K ETEAWE+ EY+EL M +++LAPNLP++K LFLGWF PL + I
Sbjct: 160 KYKAQKRRQIKIETEAWEQAAREYRELFVDMCKQKLAPNLPYMKSLFLGWFEPLRDRIAA 219
Query: 234 EQKMQRTKKQKAAYAPHIELLPADKVAVIVMHKMMGLVMAGHEDRCVQVVQAAVHIGMAI 293
EQ+ R K +AAYA +I+ LPAD VAVI MHK+MGL+M +++ C +VVQAA IG AI
Sbjct: 220 EQESYRKGKSRAAYARYIDHLPADMVAVITMHKLMGLMMTSNDNGCARVVQAACQIGEAI 279
Query: 294 EQEIRIHSFLEKTKNYKRKKIIADTE-EVLSKEKELLRKRVNSLIKSKRVMEAQKLLKN- 351
E E RIH FLEKTK A+ E E ++KEKE LRK+V SLIK +++ + K++K
Sbjct: 280 ENEARIHRFLEKTKKKPANANKAEAEPEAVTKEKEFLRKKVTSLIKKQKLRQVTKIVKGK 339
Query: 352 EETKPWGRDTQAKLGSRLVELLIE---TAYVQHPVNPADYSPPDVRPAFRHRFKTILKHP 408
++++PWG + AK+G RL+ELL++ +A + + YS AFRH ++ H
Sbjct: 340 DDSEPWGTEGHAKVGCRLIELLMKPLISAPLDQTADGHLYSS-----AFRHSLRSPSNHQ 394
Query: 409 GQKTTKRYGVVECDPLVLEGLDRSAKHMLIPYVPMLVPPKKWKGYNKGGYLFLPSYVMRT 468
Q ++RYGV+ECDPLV +GLDR+A+HM+IPY+PMLVPP W GY+KG +LFLPSYVMRT
Sbjct: 395 -QNNSRRYGVIECDPLVRKGLDRTARHMVIPYMPMLVPPLGWTGYDKGAHLFLPSYVMRT 453
Query: 469 HGSRKQQEALKSVTGNCMKKVFEALDTLGSTKWRVNKQVLSVLESIWVSGGNIAGLVDRN 528
HG+R+Q+EA+KS ++ VFEALDTLGSTKWRVNK+VL+V++ IW SGG++AGLVD
Sbjct: 454 HGARQQREAVKSAPRKQLQSVFEALDTLGSTKWRVNKRVLAVVDRIWASGGHLAGLVDCQ 513
Query: 529 DVLIPEKPLSEDMTEVQKWKWSVRKAKKINQERHSQRCDTELKLSVARRMKDEEGFYYPH 588
DV +PEKP +ED ++KWKWS+R A+K N ER+SQRCD ELKL+VAR+MKDEEGFYYPH
Sbjct: 514 DVPLPEKPDTEDEAVLRKWKWSLRNARKENSERYSQRCDVELKLAVARKMKDEEGFYYPH 573
Query: 589 NLDFRGRAYPMHPHLNHLSSDVCRGVLEFAEGRPLGKSGLRWLKIHLANLFSGGVEKLSH 648
NLDFRGRAYPMHP+LNHL SD+CRGVLEFAEGRPLGKSGL WLKIH+ANL++GG++KLS+
Sbjct: 574 NLDFRGRAYPMHPYLNHLGSDLCRGVLEFAEGRPLGKSGLHWLKIHVANLYAGGIDKLSY 633
Query: 649 DGRLAFVENHLYEIFDSAENPINGSRWWLTAEDPFQCLAACINLSEALKSSSPHSVISHL 708
DGRLAFVENHL +IFDS++ P+ GSRWWL AEDPFQCLAACINLS+AL+SSSP + ISH+
Sbjct: 634 DGRLAFVENHLDDIFDSSDRPLEGSRWWLGAEDPFQCLAACINLSDALRSSSPETTISHV 693
Query: 709 PIHQDGSCNGLQHYAALGRNTLEAAAVNLVAGEKPADVYSEIAVRVHEIMKRDSNKDPSK 768
PIHQDGSCNGLQHYAALGR+ L AAAVNLVAGEKPADVYS IA RV +IM+RDS KDP+
Sbjct: 694 PIHQDGSCNGLQHYAALGRDKLGAAAVNLVAGEKPADVYSGIAERVFDIMRRDSQKDPTN 753
Query: 769 HPQALLAKILIDQVDRKLVKQTVMTSVYGVTFVGAREQIKRRLEEKGHITDDRQLFAAAC 828
+P A A++LIDQVDRKLVKQTVMTSVYGVT++GAR+QIKRRL+E+ I DD Q+F AAC
Sbjct: 754 NPSAARARLLIDQVDRKLVKQTVMTSVYGVTYIGARDQIKRRLKERDAIPDD-QVFGAAC 812
Query: 829 YAAKVTLTALGEIFEAARSIMGWLGDCAKVIASENQPVRWTTPLGLPVVQPYCKNERHLI 888
YAAK TLTAL E+F+AAR+IM WLGDCAKVIASEN+PVRWTTPLGLPVVQPY K R L+
Sbjct: 813 YAAKTTLTALEEMFQAARAIMSWLGDCAKVIASENEPVRWTTPLGLPVVQPYKKKGRCLV 872
Query: 889 RTSLQVLALQREGNLVKIRKQRTAFPPNFVHSLDGSHMMMTAVACRDAGLHFAGL 943
+TSLQVLAL+RE + V I++QRTAFPPNFVHSLDGSHMMMTAVAC+ AGL FAG+
Sbjct: 873 KTSLQVLALKRETDKVMIKRQRTAFPPNFVHSLDGSHMMMTAVACKKAGLKFAGV 927
>gi|6958204|gb|AAF32492.1|AF091838_1 single-subunit RNA polymerase G [Triticum aestivum]
Length = 1005
Score = 1069 bits (2765), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 507/774 (65%), Positives = 633/774 (81%), Gaps = 6/774 (0%)
Query: 174 KFNLLRRRQVKQETEAWERMVDEYKELEAKMIEKRLAPNLPHIKGLFLGWFGPLSEAIER 233
K+ LR+RQ++ ETEAWE+ EY+EL A M E +LAPNLP++K LFL WF PL + I
Sbjct: 165 KYVSLRQRQIRIETEAWEQAAKEYRELLADMCEHKLAPNLPYVKSLFLSWFEPLRDQIIA 224
Query: 234 EQKMQRTKKQKAAYAPHIELLPADKVAVIVMHKMMGLVMAGHEDRCVQVVQAAVHIGMAI 293
EQ++ + +A++AP+ +LPAD +AVI MHK+MGL+M G D V+V+QAA IG A+
Sbjct: 225 EQELVSERGTRASHAPYFNMLPADMMAVITMHKLMGLLMTGSGDGSVRVIQAACQIGEAV 284
Query: 294 EQEIRIHSFLEKTKNYKR---KKIIADTEEVLSKEKELLRKRVNSLIKSKRVMEAQKLLK 350
E E+RIH FLEKTK K++ + ++KE+E LRK+V L+K +++ + + L+K
Sbjct: 285 EHEVRIHKFLEKTKKKNTKEVDKVVEAVDADIAKEQERLRKKVTDLMKKQKIRQVRHLVK 344
Query: 351 NEE-TKPWGRDTQAKLGSRLVELLIETAYVQHPVNPADYSPPDVRPAFRHRFKTILKHPG 409
++ T+PWG+D AK+GSRL+EL IETA++Q P + + S P++RPAF H +T+ +
Sbjct: 345 KQDSTRPWGQDAHAKVGSRLIELFIETAHIQPPASQSGDSTPEIRPAFTHEMRTVARE-- 402
Query: 410 QKTTKRYGVVECDPLVLEGLDRSAKHMLIPYVPMLVPPKKWKGYNKGGYLFLPSYVMRTH 469
Q+ ++RYGV++CDPLV +GLDR+AKHM+IPY+PML+PP W GY+KG +LFLPSYVMRTH
Sbjct: 403 QRKSRRYGVIKCDPLVRQGLDRTAKHMVIPYMPMLIPPINWTGYDKGAHLFLPSYVMRTH 462
Query: 470 GSRKQQEALKSVTGNCMKKVFEALDTLGSTKWRVNKQVLSVLESIWVSGGNIAGLVDRND 529
G+R+Q+EA+K M+ +FEALD LGSTKWRVNK+VLS+++ IW SGG +A LVDR D
Sbjct: 463 GARQQREAVKKAPKEQMQTIFEALDNLGSTKWRVNKEVLSIVDRIWSSGGRLADLVDRAD 522
Query: 530 VLIPEKPLSEDMTEVQKWKWSVRKAKKINQERHSQRCDTELKLSVARRMKDEEGFYYPHN 589
V +PEKP +ED E++KW+WS+R A+K N ERHSQRCD ELKL+VAR+MK+E GFYYPHN
Sbjct: 523 VSLPEKPDTEDEAELKKWRWSMRSAEKENSERHSQRCDVELKLAVARKMKEEAGFYYPHN 582
Query: 590 LDFRGRAYPMHPHLNHLSSDVCRGVLEFAEGRPLGKSGLRWLKIHLANLFSGGVEKLSHD 649
LDFRGRAYPMHP+LNHL SD+CRGVLEF+EGRPLG+SGLRWLKIHLANL+ GGV+KLS+D
Sbjct: 583 LDFRGRAYPMHPYLNHLGSDLCRGVLEFSEGRPLGESGLRWLKIHLANLYGGGVDKLSYD 642
Query: 650 GRLAFVENHLYEIFDSAENPINGSRWWLTAEDPFQCLAACINLSEALKSSSPHSVISHLP 709
GR+AF ENHL +IFDSA P+ G RWWL AEDPFQCLA C++L+EAL+S SP +VISH+P
Sbjct: 643 GRIAFTENHLDDIFDSANRPLEGKRWWLEAEDPFQCLAVCMDLNEALRSPSPETVISHIP 702
Query: 710 IHQDGSCNGLQHYAALGRNTLEAAAVNLVAGEKPADVYSEIAVRVHEIMKRDSNKDPSKH 769
+HQDGSCNGLQHYAALGR+ L A AVNLV+GEKPADVYS IA RV EIMKRD+ KDP+K
Sbjct: 703 VHQDGSCNGLQHYAALGRDKLGAVAVNLVSGEKPADVYSGIAARVVEIMKRDAQKDPAKD 762
Query: 770 PQALLAKILIDQVDRKLVKQTVMTSVYGVTFVGAREQIKRRLEEKGHITDDRQLFAAACY 829
A A++L+DQVDRKLVKQTVMTSVYGVT+VGAREQIKRRL+E+G I DD +LF A+CY
Sbjct: 763 ADAARARLLVDQVDRKLVKQTVMTSVYGVTYVGAREQIKRRLKERGVIADDSELFGASCY 822
Query: 830 AAKVTLTALGEIFEAARSIMGWLGDCAKVIASENQPVRWTTPLGLPVVQPYCKNERHLIR 889
AAKVTLTALGE+FEAARSIM WLGDCAKVIA EN+PVRWTTPLGLPVVQPY K RHLI+
Sbjct: 823 AAKVTLTALGEMFEAARSIMTWLGDCAKVIACENEPVRWTTPLGLPVVQPYRKLGRHLIK 882
Query: 890 TSLQVLALQREGNLVKIRKQRTAFPPNFVHSLDGSHMMMTAVACRDAGLHFAGL 943
TSLQVL LQRE + V +++QRTAFPPNFVHSLDGSHMMMTAVAC+ GL+FAG+
Sbjct: 883 TSLQVLTLQRETDKVMVKRQRTAFPPNFVHSLDGSHMMMTAVACKKQGLYFAGV 936
>gi|40255318|emb|CAE52834.1| RNA polymerase [Hordeum vulgare]
Length = 862
Score = 1068 bits (2763), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 506/774 (65%), Positives = 635/774 (82%), Gaps = 7/774 (0%)
Query: 174 KFNLLRRRQVKQETEAWERMVDEYKELEAKMIEKRLAPNLPHIKGLFLGWFGPLSEAIER 233
K+ LR+RQ++ ETEAWE+ EY+EL A M E +LAPNLP++K LFLGWF PL + I
Sbjct: 23 KYVSLRQRQIRIETEAWEQAAKEYRELLADMCEHKLAPNLPYVKSLFLGWFEPLRDQIIA 82
Query: 234 EQKMQRTKKQKAAYAPHIELLPADKVAVIVMHKMMGLVMAGHEDRCVQVVQAAVHIGMAI 293
EQ++ + +A++AP+ +LPAD +AVI MHK+MGL+M G D V+V+QAA IG A+
Sbjct: 83 EQELVGERGTRASHAPYFNMLPADMMAVITMHKLMGLLMTGSGDGSVRVIQAACQIGEAV 142
Query: 294 EQEIRIHSFLEKTKNYKR---KKIIADTEEVLSKEKELLRKRVNSLIKSKRVMEAQKLLK 350
E E+RIH FLEKTK K++ + ++KE++LLRK+V L+K +++ + + L+K
Sbjct: 143 EHEVRIHKFLEKTKKKNTKEVDKVVEPGDSDIAKEQQLLRKKVTDLMKKQKIRQVRHLVK 202
Query: 351 NEE-TKPWGRDTQAKLGSRLVELLIETAYVQHPVNPADYSPPDVRPAFRHRFKTILKHPG 409
++ T+PWG+D AK+GSRL+EL IETA++Q P + + S P++RPAF H +T+ +
Sbjct: 203 KQDSTRPWGQDAHAKVGSRLIELFIETAHIQPPASQSGDSTPEIRPAFTHEMRTVAR--- 259
Query: 410 QKTTKRYGVVECDPLVLEGLDRSAKHMLIPYVPMLVPPKKWKGYNKGGYLFLPSYVMRTH 469
++ ++RYGV++CDPLV +GLDR+AKHM+IPY+PML+PP W GY+KG +LFLPSYVMRTH
Sbjct: 260 EQKSRRYGVIKCDPLVRQGLDRTAKHMVIPYMPMLIPPINWTGYDKGAHLFLPSYVMRTH 319
Query: 470 GSRKQQEALKSVTGNCMKKVFEALDTLGSTKWRVNKQVLSVLESIWVSGGNIAGLVDRND 529
G+R+Q+EA+K M+ +FEALD LGSTKWRVNK+VLS+++ IW SGG +A LVDR D
Sbjct: 320 GARQQREAVKKAPKEQMQTIFEALDNLGSTKWRVNKRVLSIVDRIWSSGGRLADLVDRAD 379
Query: 530 VLIPEKPLSEDMTEVQKWKWSVRKAKKINQERHSQRCDTELKLSVARRMKDEEGFYYPHN 589
V +PEKP +ED E++KW+WS+R AKK N ERHSQRCD ELKL+VAR+MK+E GFY+PHN
Sbjct: 380 VSLPEKPDTEDEAELKKWRWSMRSAKKENSERHSQRCDVELKLAVARKMKEEVGFYHPHN 439
Query: 590 LDFRGRAYPMHPHLNHLSSDVCRGVLEFAEGRPLGKSGLRWLKIHLANLFSGGVEKLSHD 649
LDFRGRAYPMHP+LNHL SD+CRGVLEF+EGRPLG+SGLRWLKIHLANL+ GGV+KLS+D
Sbjct: 440 LDFRGRAYPMHPYLNHLGSDLCRGVLEFSEGRPLGESGLRWLKIHLANLYGGGVDKLSYD 499
Query: 650 GRLAFVENHLYEIFDSAENPINGSRWWLTAEDPFQCLAACINLSEALKSSSPHSVISHLP 709
GR+AF ENHL +IFDSA P+ G RWWL AEDPFQCLA C++L+EAL+SSSP +VISH+P
Sbjct: 500 GRIAFTENHLEDIFDSANRPLEGKRWWLEAEDPFQCLAVCMDLNEALRSSSPETVISHIP 559
Query: 710 IHQDGSCNGLQHYAALGRNTLEAAAVNLVAGEKPADVYSEIAVRVHEIMKRDSNKDPSKH 769
+HQDGSCNGLQHYAALGR+ L A AVNLV+GEKPADVYS IA RV EIMKRD+ KDP+K
Sbjct: 560 VHQDGSCNGLQHYAALGRDKLGAVAVNLVSGEKPADVYSGIAARVVEIMKRDAQKDPAKD 619
Query: 770 PQALLAKILIDQVDRKLVKQTVMTSVYGVTFVGAREQIKRRLEEKGHITDDRQLFAAACY 829
A A++L+DQVDR+LVKQTVMTSVYGVT+VGAREQIKRRL+E+G I DD +LF A+CY
Sbjct: 620 ADAARARLLVDQVDRRLVKQTVMTSVYGVTYVGAREQIKRRLKERGVIADDSELFGASCY 679
Query: 830 AAKVTLTALGEIFEAARSIMGWLGDCAKVIASENQPVRWTTPLGLPVVQPYCKNERHLIR 889
AAKVTLTALGE+FEAARSIM WLGDCAKVIA EN+PVRW TPLGLPVVQPY K RHLI+
Sbjct: 680 AAKVTLTALGEMFEAARSIMNWLGDCAKVIACENEPVRWKTPLGLPVVQPYRKLGRHLIK 739
Query: 890 TSLQVLALQREGNLVKIRKQRTAFPPNFVHSLDGSHMMMTAVACRDAGLHFAGL 943
TSLQVL LQRE + V +++QRTAFPPNFVHSLDGSHMMMTAVAC+ GL+FAG+
Sbjct: 740 TSLQVLTLQRETDKVMVKRQRTAFPPNFVHSLDGSHMMMTAVACKKQGLYFAGV 793
>gi|297738211|emb|CBI27412.3| unnamed protein product [Vitis vinifera]
Length = 810
Score = 1066 bits (2757), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 494/742 (66%), Positives = 612/742 (82%), Gaps = 3/742 (0%)
Query: 204 MIEKRLAPNLPHIKGLFLGWFGPLSEAIEREQKMQRTKKQKAAYAPHIELLPADKVAVIV 263
M E++LAPNLP+IK LFLGWF PL + I EQ + + K +AAYAP+ + LPAD +AVI
Sbjct: 1 MCEQKLAPNLPYIKSLFLGWFEPLRDVIAAEQDLCKQGKNRAAYAPYFDHLPADMMAVIT 60
Query: 264 MHKMMGLVMAGHEDRCVQVVQAAVHIGMAIEQEIRIHSFLEKTKNYKRKKIIADT-EEVL 322
MHK+MGL+M G + +VVQAA HIG AIE E+RI F+EKTK D +
Sbjct: 61 MHKLMGLLMTGEGNGSARVVQAACHIGEAIEHEVRIQRFMEKTKKKSASSNNPDGGSNPV 120
Query: 323 SKEKELLRKRVNSLIKSKRVMEAQKLLK-NEETKPWGRDTQAKLGSRLVELLIETAYVQH 381
+KE+E LRK+V+ L+K +++ + ++++K +++KPWG+D K+GSRL+ELLIETAY+Q
Sbjct: 121 TKEQEKLRKKVSMLMKKQKLQQVRQIVKRQDDSKPWGQDANVKVGSRLIELLIETAYIQP 180
Query: 382 PVNPADYSPPDVRPAFRHRFKTILKHPGQKTTKRYGVVECDPLVLEGLDRSAKHMLIPYV 441
P + PPD+RPAF H KT++K QK T+RYGV+ECDPLV +GL+++A+HM+IPY+
Sbjct: 181 PADQLGDGPPDIRPAFVHTLKTVIKET-QKGTRRYGVIECDPLVRKGLEKTARHMVIPYM 239
Query: 442 PMLVPPKKWKGYNKGGYLFLPSYVMRTHGSRKQQEALKSVTGNCMKKVFEALDTLGSTKW 501
PMLVPP W GY+KG YLFLPSYVMR HG+R+Q+EA+K ++ FEAL+TLG+TKW
Sbjct: 240 PMLVPPLNWTGYDKGAYLFLPSYVMRIHGARQQREAIKRAPRKALEPAFEALNTLGNTKW 299
Query: 502 RVNKQVLSVLESIWVSGGNIAGLVDRNDVLIPEKPLSEDMTEVQKWKWSVRKAKKINQER 561
R+NK+VL V++ IW SGG +A LVDR DV +PE+P +ED E++KWKW VR KK N ER
Sbjct: 300 RINKRVLGVIDRIWASGGRLADLVDREDVPLPEEPDTEDEAEIRKWKWKVRSVKKENSER 359
Query: 562 HSQRCDTELKLSVARRMKDEEGFYYPHNLDFRGRAYPMHPHLNHLSSDVCRGVLEFAEGR 621
HSQRCD ELKL+VAR+MKDE+GF+YPHNLDFRGRAYPMHP+LNHL SD+CRG+LEFAEGR
Sbjct: 360 HSQRCDIELKLAVARKMKDEDGFFYPHNLDFRGRAYPMHPYLNHLGSDLCRGILEFAEGR 419
Query: 622 PLGKSGLRWLKIHLANLFSGGVEKLSHDGRLAFVENHLYEIFDSAENPINGSRWWLTAED 681
PLGKSGLRWLKIHLAN+++GGV+KLS++GR+AF ENHL +IFDSA+ P+ G RWWL+AED
Sbjct: 420 PLGKSGLRWLKIHLANVYAGGVDKLSYEGRVAFTENHLEDIFDSADRPLEGRRWWLSAED 479
Query: 682 PFQCLAACINLSEALKSSSPHSVISHLPIHQDGSCNGLQHYAALGRNTLEAAAVNLVAGE 741
PFQCLA CINLSEAL+SSSP + ISH+P+HQDGSCNGLQHYAALGR+ L AAAVNLVAGE
Sbjct: 480 PFQCLATCINLSEALRSSSPETTISHMPVHQDGSCNGLQHYAALGRDKLGAAAVNLVAGE 539
Query: 742 KPADVYSEIAVRVHEIMKRDSNKDPSKHPQALLAKILIDQVDRKLVKQTVMTSVYGVTFV 801
KPADVYS IA RV +IM+RD+ KDP+ P AL A++LI QVDRKLVKQTVMTSVYGVT++
Sbjct: 540 KPADVYSGIAARVLDIMQRDAQKDPATEPNALRARLLISQVDRKLVKQTVMTSVYGVTYI 599
Query: 802 GAREQIKRRLEEKGHITDDRQLFAAACYAAKVTLTALGEIFEAARSIMGWLGDCAKVIAS 861
GAR+QIKRRL+E+ I D+ ++F+A+CYAAK TLTALGE+FEAARSIM WLGDCAKVIAS
Sbjct: 600 GARDQIKRRLKERCAIADEGEVFSASCYAAKTTLTALGEMFEAARSIMSWLGDCAKVIAS 659
Query: 862 ENQPVRWTTPLGLPVVQPYCKNERHLIRTSLQVLALQREGNLVKIRKQRTAFPPNFVHSL 921
EN PVRW TPLGLPVVQPY K RHLI+TSLQVL+LQRE + V +++QRTAFPPNFVHSL
Sbjct: 660 ENHPVRWNTPLGLPVVQPYRKLGRHLIKTSLQVLSLQRETDKVMVKRQRTAFPPNFVHSL 719
Query: 922 DGSHMMMTAVACRDAGLHFAGL 943
DGSHMMMTAVAC+ AGL+FAG+
Sbjct: 720 DGSHMMMTAVACQKAGLNFAGV 741
>gi|297811707|ref|XP_002873737.1| DNA-directed RNA polymerase [Arabidopsis lyrata subsp. lyrata]
gi|297319574|gb|EFH49996.1| DNA-directed RNA polymerase [Arabidopsis lyrata subsp. lyrata]
Length = 1009
Score = 1065 bits (2755), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 508/791 (64%), Positives = 630/791 (79%), Gaps = 18/791 (2%)
Query: 161 RIKLQEYREMKKRKFNLLRRRQVKQETEAWERMVDEYKELEAKMIEKRLAPNLPHIKGLF 220
R+K QE M + KF L RRQVK ETE WER EY EL M E++LAPNLP++K LF
Sbjct: 160 RMKKQEQFGMGRTKFQNLWRRQVKIETEEWERAAAEYMELLTDMCEQKLAPNLPYVKSLF 219
Query: 221 LGWFGPLSEAIEREQKMQRTKKQKAAYAPHIELLPADKVAVIVMHKMMGLVMAGHEDRCV 280
LGWF PL +AI ++Q++ R K KA YA +++ LPADK++VI MHK+MG +M G ++ CV
Sbjct: 220 LGWFEPLRDAIAKDQELYRLGKSKATYAHYLDQLPADKISVITMHKLMGHLMTGGDNGCV 279
Query: 281 QVVQAAVHIGMAIEQEIRIHSFLEKTKNYKRKKIIADTEE-------VLSKEKELLRKRV 333
+VV AA +G AIEQEIRI +FL+KT RKK + EE KE++ LRK+V
Sbjct: 280 KVVHAACTVGDAIEQEIRICTFLDKT----RKKKGDENEESGEVENGTSMKEQDKLRKKV 335
Query: 334 NSLIKSKRVMEAQKLLKNEE-TKPWGRDTQAKLGSRLVELLIETAYVQHPVNPADYSPPD 392
N LIK +++ +K+L++ + TKPW D +AK+GSRL+ELL+ TAY+Q P + D PD
Sbjct: 336 NELIKKQKLSAVRKILQSHDYTKPWIADVRAKVGSRLIELLVRTAYIQSPADQQDNDLPD 395
Query: 393 VRPAFRHRFKTILKHPGQKTTKRYGVVECDPLVLEGLDRSAKHMLIPYVPMLVPPKKWKG 452
VRPAF H F+ + ++YGV+ECDPLV +GL++S ++ +IPY+PMLVPP KW G
Sbjct: 396 VRPAFVHTFRI------ANSGRKYGVIECDPLVRKGLEKSGRYAVIPYMPMLVPPLKWSG 449
Query: 453 YNKGGYLFLPSYVMRTHGSRKQQEALKSVTGNCMKKVFEALDTLGSTKWRVNKQVLSVLE 512
Y+KG YLFL SY+M+THGS++Q+EALKS + VFEALDTLGSTKWRVNK+VL+V++
Sbjct: 450 YDKGAYLFLASYIMKTHGSKQQREALKSAPKGQLLPVFEALDTLGSTKWRVNKRVLTVVD 509
Query: 513 SIWVSGGNIAGLVDRNDVLIPEKPLSEDMTEVQKWKWSVRKAKKINQERHSQRCDTELKL 572
IW SGG A LVDR+DV +PEKP +ED ++KWKW V+ AKK+N ERHSQRCDTELKL
Sbjct: 510 RIWSSGGCTADLVDRSDVPLPEKPDTEDEGILKKWKWEVKSAKKVNSERHSQRCDTELKL 569
Query: 573 SVARRMKDEEGFYYPHNLDFRGRAYPMHPHLNHLSSDVCRGVLEFAEGRPLGKSGLRWLK 632
SVAR+MKDEE FYYPHN+DFRGRAYPM PHLNHL SD+CRGVLEFAEGRPLG SGLRWLK
Sbjct: 570 SVARKMKDEEAFYYPHNMDFRGRAYPMPPHLNHLGSDLCRGVLEFAEGRPLGISGLRWLK 629
Query: 633 IHLANLFSGGVEKLSHDGRLAFVENHLYEIFDSAENPINGSRWWLTAEDPFQCLAACINL 692
IHLANL++GGV+KLS DGRLAF ENHL +IFDSA+ P+ GSRWWL AEDPFQCLA CINL
Sbjct: 630 IHLANLYAGGVDKLSLDGRLAFTENHLEDIFDSADRPLEGSRWWLQAEDPFQCLAVCINL 689
Query: 693 SEALKSSSPHSVISHLPIHQDGSCNGLQHYAALGRNTLEAAAVNLVAGEKPADVYSEIAV 752
+EAL+S SP +V+SH+PIHQDGSCNGLQHYAALGR+TL A AVNLVAGEKPADVYS IA
Sbjct: 690 TEALRSPSPETVLSHIPIHQDGSCNGLQHYAALGRDTLGAEAVNLVAGEKPADVYSGIAT 749
Query: 753 RVHEIMKRDSNKDPSKHPQALLAKILIDQVDRKLVKQTVMTSVYGVTFVGAREQIKRRLE 812
RV +IM+RD+++DP +P AL A+ L++QVDRKLVKQTVMTSVYGVT++GAR+QIKRRL+
Sbjct: 750 RVLDIMRRDADRDPEAYPDALRARKLLNQVDRKLVKQTVMTSVYGVTYIGARDQIKRRLK 809
Query: 813 EKGHITDDRQLFAAACYAAKVTLTALGEIFEAARSIMGWLGDCAKVIASENQPVRWTTPL 872
E+ D++++F AACYAAKVTL A+ E+F+AAR+IM W GDCAK+IASEN+ VRWTTPL
Sbjct: 810 ERSDFGDEKEIFGAACYAAKVTLAAIDEMFQAARAIMRWFGDCAKIIASENETVRWTTPL 869
Query: 873 GLPVVQPYCKNERHLIRTSLQVLALQREGNLVKIRKQRTAFPPNFVHSLDGSHMMMTAVA 932
GLPVVQPY + L++TSLQ L+LQ E + V +R+QRTAFPPNF+HSLDGSHMMMTAVA
Sbjct: 870 GLPVVQPYHQMGTKLVKTSLQTLSLQHETDQVIVRRQRTAFPPNFIHSLDGSHMMMTAVA 929
Query: 933 CRDAGLHFAGL 943
C+ AG+ FAG+
Sbjct: 930 CKRAGVCFAGV 940
>gi|224111836|ref|XP_002315996.1| predicted protein [Populus trichocarpa]
gi|222865036|gb|EEF02167.1| predicted protein [Populus trichocarpa]
Length = 852
Score = 1065 bits (2753), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 498/781 (63%), Positives = 635/781 (81%), Gaps = 13/781 (1%)
Query: 174 KFNLLRRRQVKQETEAWERMVDEYKELEAKMIEKRLAPNLPHIKGLFLGWFGPLSEAIER 233
K+ +L+RRQVK ETEAWE+ EY+E+ M E++LAPNLP++K LFLGWF PL +AI
Sbjct: 5 KYTILKRRQVKMETEAWEQTAREYQEMLEDMCEQKLAPNLPYVKSLFLGWFEPLRDAILA 64
Query: 234 EQKMQRTKKQKAAYAPHIELLPADKVAVIVMHKMMGLVMAGHEDRC-VQVVQAAVHIGMA 292
EQ++ + + + + LPAD +AVI MHK+MGL+M G+ ++VVQAA +G A
Sbjct: 65 EQELCKVN-SRVPHRAYFNDLPADMMAVITMHKLMGLLMTGNGGTASIRVVQAASVVGEA 123
Query: 293 IEQEIRIHSFLEKTKNYKR-KKIIADTEEV--------LSKEKELLRKRVNSLIKSKRVM 343
IE E +IH FLEKTK K K+ I++ E V L+KE+E LRK+V +L+K ++V
Sbjct: 124 IENEAKIHKFLEKTKKRKNLKEKISEGESVAAIYEGEKLTKEQEKLRKKVTTLMKKQKVH 183
Query: 344 EAQKLLK-NEETKPWGRDTQAKLGSRLVELLIETAYVQHPVNPADYSPPDVRPAFRHRFK 402
+ ++++K ++++ PWG++ K+GSRL++L+IETAY+Q P++ PPD+RPAF H K
Sbjct: 184 QVRRIVKGHDDSMPWGQEAHLKVGSRLIQLMIETAYIQPPIDQIGDGPPDIRPAFVHTLK 243
Query: 403 TILKHPGQKTTKRYGVVECDPLVLEGLDRSAKHMLIPYVPMLVPPKKWKGYNKGGYLFLP 462
TI K QK+++RYGV+ECDPLV +GL++SA+HM+IPY+PMLVPP W GY++G Y FLP
Sbjct: 244 TITKDT-QKSSRRYGVIECDPLVRKGLEKSARHMVIPYMPMLVPPLNWTGYDQGAYFFLP 302
Query: 463 SYVMRTHGSRKQQEALKSVTGNCMKKVFEALDTLGSTKWRVNKQVLSVLESIWVSGGNIA 522
SYVMR HG+++Q+ A+K + N ++ VF+ALDTLG+TKWRVNK++L V++ IW SGG++A
Sbjct: 303 SYVMRIHGAKQQRVAIKRASRNQLEPVFKALDTLGNTKWRVNKRILGVIDRIWASGGHLA 362
Query: 523 GLVDRNDVLIPEKPLSEDMTEVQKWKWSVRKAKKINQERHSQRCDTELKLSVARRMKDEE 582
GLVDR DV +PE+P +ED E++KW+W V+ KK N ERHSQRCD ELKL+VAR+MKDEE
Sbjct: 363 GLVDREDVPLPEEPQTEDEAEIRKWRWKVKSVKKENSERHSQRCDVELKLAVARKMKDEE 422
Query: 583 GFYYPHNLDFRGRAYPMHPHLNHLSSDVCRGVLEFAEGRPLGKSGLRWLKIHLANLFSGG 642
GFYYPHN+DFRGRAYPMHP+LNHL SDVCRG+LEFAEGRPLGKSGLRWLKIHLANL++GG
Sbjct: 423 GFYYPHNVDFRGRAYPMHPYLNHLGSDVCRGILEFAEGRPLGKSGLRWLKIHLANLYAGG 482
Query: 643 VEKLSHDGRLAFVENHLYEIFDSAENPINGSRWWLTAEDPFQCLAACINLSEALKSSSPH 702
V+KLS+DGR++F ENHL +IFDSA+ P+ G RWWL AEDPFQCLA CINLSEAL+S SP
Sbjct: 483 VDKLSYDGRISFTENHLDDIFDSADRPLEGQRWWLGAEDPFQCLAVCINLSEALRSPSPE 542
Query: 703 SVISHLPIHQDGSCNGLQHYAALGRNTLEAAAVNLVAGEKPADVYSEIAVRVHEIMKRDS 762
+ ISH P+HQDGSCNGLQHYAALGR+ L AAAVNLV G KPADVYS IA RV +IM+RD+
Sbjct: 543 TAISHTPVHQDGSCNGLQHYAALGRDKLGAAAVNLVGGGKPADVYSGIAARVLDIMRRDA 602
Query: 763 NKDPSKHPQALLAKILIDQVDRKLVKQTVMTSVYGVTFVGAREQIKRRLEEKGHITDDRQ 822
DP+ +P ++ AK+LI+QVDRKLVKQTVMTSVYGVT++GAR+QIKRRL+E+ +I DD Q
Sbjct: 603 ENDPAINPNSVHAKLLINQVDRKLVKQTVMTSVYGVTYIGARDQIKRRLKERCNIADDPQ 662
Query: 823 LFAAACYAAKVTLTALGEIFEAARSIMGWLGDCAKVIASENQPVRWTTPLGLPVVQPYCK 882
L++AACYAAK TLTAL E+FE AR IM WLG+CAKVIASENQPV+WTTP GLPVVQPY +
Sbjct: 663 LYSAACYAAKTTLTALEEMFEGARGIMAWLGECAKVIASENQPVQWTTPFGLPVVQPYRQ 722
Query: 883 NERHLIRTSLQVLALQREGNLVKIRKQRTAFPPNFVHSLDGSHMMMTAVACRDAGLHFAG 942
R LI+TSLQVL LQRE + V +++QRTAFPPNFVHSLDGSHMMMTAVAC++AGL+FAG
Sbjct: 723 LGRQLIKTSLQVLTLQRETDKVMVKRQRTAFPPNFVHSLDGSHMMMTAVACKEAGLNFAG 782
Query: 943 L 943
+
Sbjct: 783 V 783
>gi|110740738|dbj|BAE98468.1| chloroplast single subunit DNA-dependent RNA polymerase
[Arabidopsis thaliana]
Length = 786
Score = 1064 bits (2752), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 516/721 (71%), Positives = 599/721 (83%), Gaps = 13/721 (1%)
Query: 90 IENSVDFHIPTCEQEQNFHQRVENTETCADLVIPRSENSTNHQLMCLEPRRRIFVQDPPW 149
I NSV FH E +N T A L I EN L RRR+F+QDPPW
Sbjct: 74 ISNSVHFHGNLIESFENQDSSYAGTIKGASL-IEELENPVERN--GLSGRRRLFMQDPPW 130
Query: 150 FSSIFLKGLYKRIKLQ---EYREMKKRKFNLLRRRQVKQETEAWERMVDEYKELEAKMIE 206
S++FLKGL K + E +++ KRKF+ LRRRQVK+ETEAWERMVDEY++LE +M E
Sbjct: 131 ISALFLKGLSKMVDQTLKIERKDIDKRKFDSLRRRQVKEETEAWERMVDEYRDLEKEMCE 190
Query: 207 KRLAPNLPHIKGLFLGWFGPLSEAIEREQKMQR--TKKQKAAYAPHIELLPADKVAVIVM 264
K LAPNLP++K +FLGWF PL + IEREQK+Q+ +KK +AAYAPHIELLPADK+AVIVM
Sbjct: 191 KNLAPNLPYVKHMFLGWFQPLKDVIEREQKLQKNKSKKVRAAYAPHIELLPADKMAVIVM 250
Query: 265 HKMMGLVMAGHEDRCVQVVQAAVHIGMAIEQEIRIHSFLEKTKNYKRKKIIADTEEVLSK 324
HKMMGLVM+GHED C+QVVQAAV IG+AIEQE+RIH+FL++T RK D++E L K
Sbjct: 251 HKMMGLVMSGHEDGCIQVVQAAVSIGIAIEQEVRIHNFLKRT----RKNNAGDSQEEL-K 305
Query: 325 EKELLRKRVNSLIKSKRVMEAQKLLKNEETKPWGRDTQAKLGSRLVELLIETAYVQHPVN 384
EK+LLRKRVNSLI+ KR+++A K++K+E TKPWGR TQAKLGSRL+ELLIE AYVQ P+
Sbjct: 306 EKQLLRKRVNSLIRRKRIIDALKVVKSEGTKPWGRATQAKLGSRLLELLIEAAYVQPPLT 365
Query: 385 PADYSPPDVRPAFRHRFKTILKHPGQKTTKRYGVVECDPLVLEGLDRSAKHMLIPYVPML 444
+ S P+ RPAFRHRFKT+ K+PG K +RYGV+ECD L+L GLD+SAKHMLIPYVPML
Sbjct: 366 QSGDSIPEFRPAFRHRFKTVTKYPGSKLVRRYGVIECDSLLLAGLDKSAKHMLIPYVPML 425
Query: 445 VPPKKWKGYNKGGYLFLPSYVMRTHGSRKQQEALKSVTGNCMKKVFEALDTLGSTKWRVN 504
VPPK+WKGY+KGGYLFLPSY+MRTHGS+KQQ+ALK ++ +VFEALDTLG+TKWRVN
Sbjct: 426 VPPKRWKGYDKGGYLFLPSYIMRTHGSKKQQDALKDISHKTAHRVFEALDTLGNTKWRVN 485
Query: 505 KQVLSVLESIWVSGGNIAGLVDRNDVLIPEKPLSEDMTEVQKWKWSVRKAKKINQERHSQ 564
+ +L V+E +W GGNIAGLV+R DV IPEKP SED E+Q WKWS RKA KIN+ERHS
Sbjct: 486 RNILDVVERLWADGGNIAGLVNREDVPIPEKPSSEDPEELQSWKWSARKANKINRERHSL 545
Query: 565 RCDTELKLSVARRMKDEEGFYYPHNLDFRGRAYPMHPHLNHLSSDVCRGVLEFAEGRPLG 624
RCD ELKLSVAR+MKDEEGFYYPHNLDFRGRAYPMHPHLNHLSSD+CRG LEFAEGRPLG
Sbjct: 546 RCDVELKLSVARKMKDEEGFYYPHNLDFRGRAYPMHPHLNHLSSDLCRGTLEFAEGRPLG 605
Query: 625 KSGLRWLKIHLANLFSGGVEKLSHDGRLAFVENHLYEIFDSAENPINGSRWWLTAEDPFQ 684
KSGL WLKIHLANL++GGVEKLSHD RLAFVENHL +I DSAENPI+G RWWL AEDPFQ
Sbjct: 606 KSGLHWLKIHLANLYAGGVEKLSHDARLAFVENHLDDIMDSAENPIHGKRWWLKAEDPFQ 665
Query: 685 CLAACINLSEALKSSSPHSVISHLPIHQDGSCNGLQHYAALGRNTLEAAAVNLVAGEKPA 744
CLAAC+ L++ALKS SP+SVISHLPIHQDGSCNGLQHYAALGR++ EAAAVNLVAGEKPA
Sbjct: 666 CLAACVILTQALKSPSPYSVISHLPIHQDGSCNGLQHYAALGRDSFEAAAVNLVAGEKPA 725
Query: 745 DVYSEIAVRVHEIMKRDSNKDPSKHPQALLAKILIDQVDRKLVKQTVMTSVYGVTFVGAR 804
DVYSEI+ RVHEIMK+DS+KDP +P A LAKILI QVDRKLVKQTVMTSVYGVT+VGAR
Sbjct: 726 DVYSEISRRVHEIMKKDSSKDPESNPTAALAKILITQVDRKLVKQTVMTSVYGVTYVGAR 785
Query: 805 E 805
E
Sbjct: 786 E 786
>gi|15823750|dbj|BAB69063.1| T7 bacteriophage-type single subunit RNA polymerase [Nicotiana
sylvestris]
Length = 1002
Score = 1064 bits (2752), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 503/774 (64%), Positives = 630/774 (81%), Gaps = 9/774 (1%)
Query: 174 KFNLLRRRQVKQETEAWERMVDEYKELEAKMIEKRLAPNLPHIKGLFLGWFGPLSEAIER 233
K+NLLRRRQ+K ETEAWE EY+EL M E++LAPNLP++K LFLGWF PL +AI
Sbjct: 165 KYNLLRRRQIKVETEAWEEAAKEYQELLMDMCEQKLAPNLPYMKSLFLGWFEPLRDAIAA 224
Query: 234 EQKMQRTKKQKAAYAPHIELLPADKVAVIVMHKMMGLVMAGHEDRCVQVVQAAVHIGMAI 293
EQK+ K + A AP + LPA+ +AVI MHK+MG +M G +VVQAA HIG AI
Sbjct: 225 EQKLCDEGKNRGACAPFFDQLPAEMMAVITMHKLMGWLMTGGGTGSARVVQAASHIGEAI 284
Query: 294 EQEIRIHSFLEKTKNYKRKKIIADTEEV---LSKEKELLRKRVNSLIKSKRVMEAQKLLK 350
E E RIH FLEKTK K + D E+ + KE+E +RK+V L+K +++ + +K++K
Sbjct: 285 EHEARIHRFLEKTK--KSNALSGDLEDTPGDIMKERERVRKKVKILMKKQKLQQVRKIVK 342
Query: 351 NEET-KPWGRDTQAKLGSRLVELLIETAYVQHPVNPADYSPPDVRPAFRHRFKTILKHPG 409
++ KPWG+D K+G RL+++L+ETAY+Q P + D PPD+RPAF H KT+
Sbjct: 343 QQDDEKPWGQDNLVKVGCRLIQILMETAYIQPPNDQLDDCPPDIRPAFVHTLKTV---ET 399
Query: 410 QKTTKRYGVVECDPLVLEGLDRSAKHMLIPYVPMLVPPKKWKGYNKGGYLFLPSYVMRTH 469
K ++RYGV++CDPLV +GLD++A+HM+IPY+PMLVPP+ W GY+KG YLFLPSY+MRTH
Sbjct: 400 MKGSRRYGVIQCDPLVRKGLDKTARHMVIPYMPMLVPPQSWLGYDKGAYLFLPSYIMRTH 459
Query: 470 GSRKQQEALKSVTGNCMKKVFEALDTLGSTKWRVNKQVLSVLESIWVSGGNIAGLVDRND 529
G+++Q+EA+K V ++ VF+ALDTLG+TKWR+N++VL +++ IW SGG +A LVDR D
Sbjct: 460 GAKQQREAVKRVPKKQLEPVFQALDTLGNTKWRLNRKVLGIVDRIWASGGRLADLVDRED 519
Query: 530 VLIPEKPLSEDMTEVQKWKWSVRKAKKINQERHSQRCDTELKLSVARRMKDEEGFYYPHN 589
V +PE+P +ED +++KWKW V+ KK N ERHSQRCD ELKL+VAR+MKDE+GFYYPHN
Sbjct: 520 VPLPEEPDAEDEAQIRKWKWKVKGVKKENCERHSQRCDIELKLAVARKMKDEDGFYYPHN 579
Query: 590 LDFRGRAYPMHPHLNHLSSDVCRGVLEFAEGRPLGKSGLRWLKIHLANLFSGGVEKLSHD 649
LDFRGRAYPMHP+LNHL SD+CRG+LEFAEGRPLGKSGLRWLKIHLAN++ GGV+KLS++
Sbjct: 580 LDFRGRAYPMHPYLNHLGSDLCRGILEFAEGRPLGKSGLRWLKIHLANVYGGGVDKLSYE 639
Query: 650 GRLAFVENHLYEIFDSAENPINGSRWWLTAEDPFQCLAACINLSEALKSSSPHSVISHLP 709
GR+AF ENH+ +IFDSAE P+ G RWWL AEDPFQCLA CIN++EAL+S SP + IS++P
Sbjct: 640 GRVAFSENHVEDIFDSAERPLEGKRWWLGAEDPFQCLATCINIAEALRSPSPETAISYMP 699
Query: 710 IHQDGSCNGLQHYAALGRNTLEAAAVNLVAGEKPADVYSEIAVRVHEIMKRDSNKDPSKH 769
IHQDGSCNGLQHYAALGR+TL AAAVNLVAG+KPADVYS IA RV +IMKRD+ KDP+
Sbjct: 700 IHQDGSCNGLQHYAALGRDTLGAAAVNLVAGDKPADVYSGIAARVLDIMKRDAAKDPAND 759
Query: 770 PQALLAKILIDQVDRKLVKQTVMTSVYGVTFVGAREQIKRRLEEKGHITDDRQLFAAACY 829
P + A++LI+QVDRKLVKQTVMTSVYGVT++GAR+QIKRRL+E+G I DD +LFAAACY
Sbjct: 760 PNVMRARLLINQVDRKLVKQTVMTSVYGVTYIGARDQIKRRLKERGVIEDDNELFAAACY 819
Query: 830 AAKVTLTALGEIFEAARSIMGWLGDCAKVIASENQPVRWTTPLGLPVVQPYCKNERHLIR 889
AAK TLTALGE+FEAARSIM WLGDCAK+IA EN PVRWTTPLGLPVVQPY K RHLI+
Sbjct: 820 AAKTTLTALGEMFEAARSIMSWLGDCAKIIAMENHPVRWTTPLGLPVVQPYRKLGRHLIK 879
Query: 890 TSLQVLALQREGNLVKIRKQRTAFPPNFVHSLDGSHMMMTAVACRDAGLHFAGL 943
TSLQ+L LQRE + V +++QRTAFPPNFVHSLDGSHMMMTA+AC+++GL FAG+
Sbjct: 880 TSLQILTLQRETDKVMVKRQRTAFPPNFVHSLDGSHMMMTAIACKESGLSFAGV 933
>gi|2326363|emb|CAA04491.1| DNA-directed RNA polymerase [Arabidopsis thaliana]
Length = 1011
Score = 1064 bits (2751), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 501/785 (63%), Positives = 631/785 (80%), Gaps = 4/785 (0%)
Query: 161 RIKLQEYREMKKRKFNLLRRRQVKQETEAWERMVDEYKELEAKMIEKRLAPNLPHIKGLF 220
R+K Q+ M + KF L RRQVK ETE WER EY EL M E++LAPNLP++K LF
Sbjct: 160 RMKKQDQFGMGRTKFQNLWRRQVKIETEEWERAAAEYMELLTDMCEQKLAPNLPYVKSLF 219
Query: 221 LGWFGPLSEAIEREQKMQRTKKQKAAYAPHIELLPADKVAVIVMHKMMGLVMAGHEDRCV 280
LGWF PL +AI ++Q++ R K KA YA +++ LPADK++VI MHK+MG +M G ++ CV
Sbjct: 220 LGWFEPLRDAIAKDQELYRLGKSKATYAHYLDQLPADKISVITMHKLMGHLMTGGDNGCV 279
Query: 281 QVVQAAVHIGMAIEQEIRIHSFLEKTKNYKRKKIIADTE-EVLSKEKELLRKRVNSLIKS 339
+VV AA +G AIEQEIRI +FL+K K + E E KE++ LRK+VN LIK
Sbjct: 280 KVVHAACTVGDAIEQEIRICTFLDKKKKGDDNEESGGVENETSMKEQDKLRKKVNELIKK 339
Query: 340 KRVMEAQKLLKNEE-TKPWGRDTQAKLGSRLVELLIETAYVQHPVNPADYSPPDVRPAFR 398
+++ +K+L++ + TKPW D +AK+GSRL+ELL+ TAY+Q P + D PDVRPAF
Sbjct: 340 QKLSAVRKILQSHDYTKPWIADVRAKVGSRLIELLVRTAYIQSPADQQDNDLPDVRPAFV 399
Query: 399 HRFKTILKHPGQKTTKRYGVVECDPLVLEGLDRSAKHMLIPYVPMLVPPKKWKGYNKGGY 458
H FK + + ++YGV+ECDPLV +GL++S ++ ++PY+PMLVPP KW GY+KG Y
Sbjct: 400 HTFK--VAKGSMNSGRKYGVIECDPLVRKGLEKSGRYAVMPYMPMLVPPLKWSGYDKGAY 457
Query: 459 LFLPSYVMRTHGSRKQQEALKSVTGNCMKKVFEALDTLGSTKWRVNKQVLSVLESIWVSG 518
LFL SY+MRTHG+++Q+EALKS ++ VFEALDTLGSTKWRVNK+VL+V++ IW SG
Sbjct: 458 LFLTSYIMRTHGAKQQREALKSAPKGQLQPVFEALDTLGSTKWRVNKRVLTVVDRIWSSG 517
Query: 519 GNIAGLVDRNDVLIPEKPLSEDMTEVQKWKWSVRKAKKINQERHSQRCDTELKLSVARRM 578
G +A +VDR+DV +PEKP +ED ++KWKW V+ AKK+N ERHSQRCDTELKLSVAR+M
Sbjct: 518 GCVADMVDRSDVPLPEKPDTEDEGILKKWKWEVKSAKKVNSERHSQRCDTELKLSVARKM 577
Query: 579 KDEEGFYYPHNLDFRGRAYPMHPHLNHLSSDVCRGVLEFAEGRPLGKSGLRWLKIHLANL 638
KDEE FYYPHN+DFRGRAYPM PHLNHL SD+CRGVLEFAEGRP+G SGLRWLKIHLANL
Sbjct: 578 KDEEAFYYPHNMDFRGRAYPMPPHLNHLGSDLCRGVLEFAEGRPMGISGLRWLKIHLANL 637
Query: 639 FSGGVEKLSHDGRLAFVENHLYEIFDSAENPINGSRWWLTAEDPFQCLAACINLSEALKS 698
++GGV+KLS DGRLAF ENHL +IFDSA+ P+ GSRWWL AEDPFQCLA CI+L+EAL+S
Sbjct: 638 YAGGVDKLSLDGRLAFTENHLDDIFDSADRPLEGSRWWLQAEDPFQCLAVCISLTEALRS 697
Query: 699 SSPHSVISHLPIHQDGSCNGLQHYAALGRNTLEAAAVNLVAGEKPADVYSEIAVRVHEIM 758
SP +V+SH+PIHQDGSCNGLQHYAALGR+TL A AVNLVAGEKPADVYSEIA RV +IM
Sbjct: 698 PSPETVLSHIPIHQDGSCNGLQHYAALGRDTLGAEAVNLVAGEKPADVYSEIATRVLDIM 757
Query: 759 KRDSNKDPSKHPQALLAKILIDQVDRKLVKQTVMTSVYGVTFVGAREQIKRRLEEKGHIT 818
+RD+++DP P+AL A+ L++QVDRKLVKQTVMTSVYGVT++GAR+QIKRRL+E+
Sbjct: 758 RRDADRDPEVFPEALRARKLLNQVDRKLVKQTVMTSVYGVTYIGARDQIKRRLKERSDFG 817
Query: 819 DDRQLFAAACYAAKVTLTALGEIFEAARSIMGWLGDCAKVIASENQPVRWTTPLGLPVVQ 878
D++++F AACYAAKVTL A+ E+F+AAR+IM W G+CAK+IASEN+ VRWTTPLGLPVVQ
Sbjct: 818 DEKEVFGAACYAAKVTLAAIDEMFQAARAIMRWFGECAKIIASENETVRWTTPLGLPVVQ 877
Query: 879 PYCKNERHLIRTSLQVLALQREGNLVKIRKQRTAFPPNFVHSLDGSHMMMTAVACRDAGL 938
PY + L++TSLQ L+LQ E + V +R+QRTAFPPNF+HSLDGSHMMMTAVAC+ AG+
Sbjct: 878 PYHQMGTKLVKTSLQTLSLQHETDQVIVRRQRTAFPPNFIHSLDGSHMMMTAVACKRAGV 937
Query: 939 HFAGL 943
FAG+
Sbjct: 938 CFAGV 942
>gi|334187707|ref|NP_001190318.1| DNA-directed RNA polymerase 2 [Arabidopsis thaliana]
gi|332004811|gb|AED92194.1| DNA-directed RNA polymerase 2 [Arabidopsis thaliana]
Length = 1051
Score = 1061 bits (2743), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 499/785 (63%), Positives = 630/785 (80%), Gaps = 4/785 (0%)
Query: 161 RIKLQEYREMKKRKFNLLRRRQVKQETEAWERMVDEYKELEAKMIEKRLAPNLPHIKGLF 220
R+K Q+ M + KF L RRQVK ETE WER EY EL M E++LAPNLP++K LF
Sbjct: 160 RMKKQDQFGMGRTKFQNLWRRQVKIETEEWERAAAEYMELLTDMCEQKLAPNLPYVKSLF 219
Query: 221 LGWFGPLSEAIEREQKMQRTKKQKAAYAPHIELLPADKVAVIVMHKMMGLVMAGHEDRCV 280
LGWF PL +AI ++Q++ R K KA YA +++ LPADK++VI MHK+MG +M G ++ CV
Sbjct: 220 LGWFEPLRDAIAKDQELYRLGKSKATYAHYLDQLPADKISVITMHKLMGHLMTGGDNGCV 279
Query: 281 QVVQAAVHIGMAIEQEIRIHSFLEKTKNYKRKKIIADTE-EVLSKEKELLRKRVNSLIKS 339
+VV AA +G AIEQEIRI +FL+K K + E E KE++ LRK+VN LIK
Sbjct: 280 KVVHAACTVGDAIEQEIRICTFLDKKKKGDDNEESGGVENETSMKEQDKLRKKVNELIKK 339
Query: 340 KRVMEAQKLLKNEE-TKPWGRDTQAKLGSRLVELLIETAYVQHPVNPADYSPPDVRPAFR 398
+++ +K+L++ + TKPW D +AK+GSRL+ELL+ TAY+Q P + D PDVRPAF
Sbjct: 340 QKLSAVRKILQSHDYTKPWIADVRAKVGSRLIELLVRTAYIQSPADQQDNDLPDVRPAFV 399
Query: 399 HRFKTILKHPGQKTTKRYGVVECDPLVLEGLDRSAKHMLIPYVPMLVPPKKWKGYNKGGY 458
H FK + + ++YGV+ECDPLV +GL++S ++ ++PY+PMLVPP KW GY+KG Y
Sbjct: 400 HTFK--VAKGSMNSGRKYGVIECDPLVRKGLEKSGRYAVMPYMPMLVPPLKWSGYDKGAY 457
Query: 459 LFLPSYVMRTHGSRKQQEALKSVTGNCMKKVFEALDTLGSTKWRVNKQVLSVLESIWVSG 518
LFL SY+M+THG+++Q+EALKS ++ VFEALDTLGSTKWRVNK+VL+V++ IW SG
Sbjct: 458 LFLTSYIMKTHGAKQQREALKSAPKGQLQPVFEALDTLGSTKWRVNKRVLTVVDRIWSSG 517
Query: 519 GNIAGLVDRNDVLIPEKPLSEDMTEVQKWKWSVRKAKKINQERHSQRCDTELKLSVARRM 578
G +A +VDR+DV +PEKP +ED ++KWKW V+ AKK+N ERHSQRCDTELKLSVAR+M
Sbjct: 518 GCVADMVDRSDVPLPEKPDTEDEGILKKWKWEVKSAKKVNSERHSQRCDTELKLSVARKM 577
Query: 579 KDEEGFYYPHNLDFRGRAYPMHPHLNHLSSDVCRGVLEFAEGRPLGKSGLRWLKIHLANL 638
KDEE FYYPHN+DFRGRAYPM PHLNHL SD+CRGVLEFAEGRP+G SGLRWLKIHLANL
Sbjct: 578 KDEEAFYYPHNMDFRGRAYPMPPHLNHLGSDLCRGVLEFAEGRPMGISGLRWLKIHLANL 637
Query: 639 FSGGVEKLSHDGRLAFVENHLYEIFDSAENPINGSRWWLTAEDPFQCLAACINLSEALKS 698
++GGV+KLS DGRLAF ENHL +IFDSA+ P+ GSRWWL AEDPFQCLA CI+L+EAL+S
Sbjct: 638 YAGGVDKLSLDGRLAFTENHLDDIFDSADRPLEGSRWWLQAEDPFQCLAVCISLTEALRS 697
Query: 699 SSPHSVISHLPIHQDGSCNGLQHYAALGRNTLEAAAVNLVAGEKPADVYSEIAVRVHEIM 758
SP +V+SH+PIHQDGSCNGLQHYAALGR+TL A AVNLVAGEKPADVYS IA RV +IM
Sbjct: 698 PSPETVLSHIPIHQDGSCNGLQHYAALGRDTLGAEAVNLVAGEKPADVYSGIATRVLDIM 757
Query: 759 KRDSNKDPSKHPQALLAKILIDQVDRKLVKQTVMTSVYGVTFVGAREQIKRRLEEKGHIT 818
+RD+++DP P+AL A+ L++QVDRKLVKQTVMTSVYGVT++GAR+QIKRRL+E+
Sbjct: 758 RRDADRDPEVFPEALRARKLLNQVDRKLVKQTVMTSVYGVTYIGARDQIKRRLKERSDFG 817
Query: 819 DDRQLFAAACYAAKVTLTALGEIFEAARSIMGWLGDCAKVIASENQPVRWTTPLGLPVVQ 878
D++++F AACYAAKVTL A+ E+F+AAR+IM W G+CAK+IASEN+ VRWTTPLGLPVVQ
Sbjct: 818 DEKEVFGAACYAAKVTLAAIDEMFQAARAIMRWFGECAKIIASENETVRWTTPLGLPVVQ 877
Query: 879 PYCKNERHLIRTSLQVLALQREGNLVKIRKQRTAFPPNFVHSLDGSHMMMTAVACRDAGL 938
PY + L++TSLQ L+LQ E + V +R+QRTAFPPNF+HSLDGSHMMMTAVAC+ AG+
Sbjct: 878 PYHQMGTKLVKTSLQTLSLQHETDQVIVRRQRTAFPPNFIHSLDGSHMMMTAVACKRAGV 937
Query: 939 HFAGL 943
FAG+
Sbjct: 938 CFAGV 942
>gi|15242369|ref|NP_197074.1| DNA-directed RNA polymerase 2 [Arabidopsis thaliana]
gi|75311147|sp|Q9LFV6.1|RPOT2_ARATH RecName: Full=DNA-directed RNA polymerase 2,
chloroplastic/mitochondrial; Flags: Precursor
gi|9755615|emb|CAC01769.1| DNA-directed RNA polymerase (mitochondrial) [Arabidopsis thaliana]
gi|11340683|emb|CAC17120.1| phage-type RNA polymerase rpoT2 [Arabidopsis thaliana]
gi|332004810|gb|AED92193.1| DNA-directed RNA polymerase 2 [Arabidopsis thaliana]
Length = 1011
Score = 1060 bits (2741), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 499/785 (63%), Positives = 630/785 (80%), Gaps = 4/785 (0%)
Query: 161 RIKLQEYREMKKRKFNLLRRRQVKQETEAWERMVDEYKELEAKMIEKRLAPNLPHIKGLF 220
R+K Q+ M + KF L RRQVK ETE WER EY EL M E++LAPNLP++K LF
Sbjct: 160 RMKKQDQFGMGRTKFQNLWRRQVKIETEEWERAAAEYMELLTDMCEQKLAPNLPYVKSLF 219
Query: 221 LGWFGPLSEAIEREQKMQRTKKQKAAYAPHIELLPADKVAVIVMHKMMGLVMAGHEDRCV 280
LGWF PL +AI ++Q++ R K KA YA +++ LPADK++VI MHK+MG +M G ++ CV
Sbjct: 220 LGWFEPLRDAIAKDQELYRLGKSKATYAHYLDQLPADKISVITMHKLMGHLMTGGDNGCV 279
Query: 281 QVVQAAVHIGMAIEQEIRIHSFLEKTKNYKRKKIIADTE-EVLSKEKELLRKRVNSLIKS 339
+VV AA +G AIEQEIRI +FL+K K + E E KE++ LRK+VN LIK
Sbjct: 280 KVVHAACTVGDAIEQEIRICTFLDKKKKGDDNEESGGVENETSMKEQDKLRKKVNELIKK 339
Query: 340 KRVMEAQKLLKNEE-TKPWGRDTQAKLGSRLVELLIETAYVQHPVNPADYSPPDVRPAFR 398
+++ +K+L++ + TKPW D +AK+GSRL+ELL+ TAY+Q P + D PDVRPAF
Sbjct: 340 QKLSAVRKILQSHDYTKPWIADVRAKVGSRLIELLVRTAYIQSPADQQDNDLPDVRPAFV 399
Query: 399 HRFKTILKHPGQKTTKRYGVVECDPLVLEGLDRSAKHMLIPYVPMLVPPKKWKGYNKGGY 458
H FK + + ++YGV+ECDPLV +GL++S ++ ++PY+PMLVPP KW GY+KG Y
Sbjct: 400 HTFK--VAKGSMNSGRKYGVIECDPLVRKGLEKSGRYAVMPYMPMLVPPLKWSGYDKGAY 457
Query: 459 LFLPSYVMRTHGSRKQQEALKSVTGNCMKKVFEALDTLGSTKWRVNKQVLSVLESIWVSG 518
LFL SY+M+THG+++Q+EALKS ++ VFEALDTLGSTKWRVNK+VL+V++ IW SG
Sbjct: 458 LFLTSYIMKTHGAKQQREALKSAPKGQLQPVFEALDTLGSTKWRVNKRVLTVVDRIWSSG 517
Query: 519 GNIAGLVDRNDVLIPEKPLSEDMTEVQKWKWSVRKAKKINQERHSQRCDTELKLSVARRM 578
G +A +VDR+DV +PEKP +ED ++KWKW V+ AKK+N ERHSQRCDTELKLSVAR+M
Sbjct: 518 GCVADMVDRSDVPLPEKPDTEDEGILKKWKWEVKSAKKVNSERHSQRCDTELKLSVARKM 577
Query: 579 KDEEGFYYPHNLDFRGRAYPMHPHLNHLSSDVCRGVLEFAEGRPLGKSGLRWLKIHLANL 638
KDEE FYYPHN+DFRGRAYPM PHLNHL SD+CRGVLEFAEGRP+G SGLRWLKIHLANL
Sbjct: 578 KDEEAFYYPHNMDFRGRAYPMPPHLNHLGSDLCRGVLEFAEGRPMGISGLRWLKIHLANL 637
Query: 639 FSGGVEKLSHDGRLAFVENHLYEIFDSAENPINGSRWWLTAEDPFQCLAACINLSEALKS 698
++GGV+KLS DGRLAF ENHL +IFDSA+ P+ GSRWWL AEDPFQCLA CI+L+EAL+S
Sbjct: 638 YAGGVDKLSLDGRLAFTENHLDDIFDSADRPLEGSRWWLQAEDPFQCLAVCISLTEALRS 697
Query: 699 SSPHSVISHLPIHQDGSCNGLQHYAALGRNTLEAAAVNLVAGEKPADVYSEIAVRVHEIM 758
SP +V+SH+PIHQDGSCNGLQHYAALGR+TL A AVNLVAGEKPADVYS IA RV +IM
Sbjct: 698 PSPETVLSHIPIHQDGSCNGLQHYAALGRDTLGAEAVNLVAGEKPADVYSGIATRVLDIM 757
Query: 759 KRDSNKDPSKHPQALLAKILIDQVDRKLVKQTVMTSVYGVTFVGAREQIKRRLEEKGHIT 818
+RD+++DP P+AL A+ L++QVDRKLVKQTVMTSVYGVT++GAR+QIKRRL+E+
Sbjct: 758 RRDADRDPEVFPEALRARKLLNQVDRKLVKQTVMTSVYGVTYIGARDQIKRRLKERSDFG 817
Query: 819 DDRQLFAAACYAAKVTLTALGEIFEAARSIMGWLGDCAKVIASENQPVRWTTPLGLPVVQ 878
D++++F AACYAAKVTL A+ E+F+AAR+IM W G+CAK+IASEN+ VRWTTPLGLPVVQ
Sbjct: 818 DEKEVFGAACYAAKVTLAAIDEMFQAARAIMRWFGECAKIIASENETVRWTTPLGLPVVQ 877
Query: 879 PYCKNERHLIRTSLQVLALQREGNLVKIRKQRTAFPPNFVHSLDGSHMMMTAVACRDAGL 938
PY + L++TSLQ L+LQ E + V +R+QRTAFPPNF+HSLDGSHMMMTAVAC+ AG+
Sbjct: 878 PYHQMGTKLVKTSLQTLSLQHETDQVIVRRQRTAFPPNFIHSLDGSHMMMTAVACKRAGV 937
Query: 939 HFAGL 943
FAG+
Sbjct: 938 CFAGV 942
>gi|357123259|ref|XP_003563329.1| PREDICTED: DNA-directed RNA polymerase 3, chloroplastic-like
[Brachypodium distachyon]
Length = 943
Score = 1059 bits (2738), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 490/767 (63%), Positives = 633/767 (82%), Gaps = 8/767 (1%)
Query: 180 RRQVKQETEAWERMVDEYKELEAKMIEKRLAPNLPHIKGLFLGWFGPLSEAIEREQKMQR 239
+RQVK ETEAW R +EY++LE +M+++ LAP+LP++K LFLGWF PL +AI R+Q++QR
Sbjct: 113 QRQVKAETEAWARAAEEYRQLEREMLDRNLAPSLPYVKSLFLGWFEPLRDAIARDQEVQR 172
Query: 240 TKKQKAAYAPHIELLPADKVAVIVMHKMMGLVMAGHEDRC--VQVVQAAVHIGMAIEQEI 297
K+ K YA ++ LLPA+KV+VIVMHKMMGL+M+ ++D C V+VVQAA IG A+E+E
Sbjct: 173 RKRVKHVYAKYLLLLPAEKVSVIVMHKMMGLLMS-NKDGCGSVRVVQAAHSIGEAVEREF 231
Query: 298 RIHSFLEKTKNYKRKKIIADTEEVLSKEKELLRKRVNSLIKSKRVMEAQKLLKNE-ETKP 356
++ +F +KT+ +K + + L KE+ RK V SL+K +++ EAQKL++ E E +
Sbjct: 232 KVQAFFQKTR---KKGKNGENDPALGKEQAKCRKLVKSLVKRRKLTEAQKLVQQEIELEE 288
Query: 357 WGRDTQAKLGSRLVELLIETAYVQHPVNPADYSPPDVRPAFRHRFKTILKHPGQKTTKRY 416
WG + Q KLG+RL+ELL+++A+VQ P + S PD RPAF+H + + G + K++
Sbjct: 289 WGTEAQVKLGTRLIELLLDSAFVQSPADQIPDSSPDFRPAFKHVLRKPIVENG-RLKKKH 347
Query: 417 GVVECDPLVLEGLDRSAKHMLIPYVPMLVPPKKWKGYNKGGYLFLPSYVMRTHGSRKQQE 476
V+ECDPLV EG + +A+H+ IPY+PMLVPP KWKGY+KGG+LFLPSYVMRTHG + Q+E
Sbjct: 348 FVIECDPLVHEGFESTARHVEIPYLPMLVPPTKWKGYDKGGHLFLPSYVMRTHGVKDQKE 407
Query: 477 ALKSVTGNCMKKVFEALDTLGSTKWRVNKQVLSVLESIWVSGGNIAGLVDRNDVLIPEKP 536
A+KSV ++KVFEALD LG TKWRVN++V V+E+IW GG IAGLVD+ D+ +PE+P
Sbjct: 408 AIKSVPRKQLRKVFEALDILGGTKWRVNRRVHDVVETIWSRGGGIAGLVDKGDIPLPERP 467
Query: 537 LSEDMTEVQKWKWSVRKAKKINQERHSQRCDTELKLSVARRMKDEEGFYYPHNLDFRGRA 596
SED E+QKWKWS++KAKKIN+E H++RCDTELKLSVAR+M++E+GFYYPHNLDFRGRA
Sbjct: 468 ESEDPDEIQKWKWSLKKAKKINRELHAERCDTELKLSVARKMREEDGFYYPHNLDFRGRA 527
Query: 597 YPMHPHLNHLSSDVCRGVLEFAEGRPLGKSGLRWLKIHLANLFSGGVEKLSHDGRLAFVE 656
YPMHPHL+HL SD+CRGVLE+AEGRPLGKSGLRWLKIHLAN + GG+EKLSH +LAFVE
Sbjct: 528 YPMHPHLSHLGSDLCRGVLEYAEGRPLGKSGLRWLKIHLANKYGGGIEKLSHGSKLAFVE 587
Query: 657 NHLYEIFDSAENPINGSRWWLTAEDPFQCLAACINLSEALKSSSPHSVISHLPIHQDGSC 716
NHL +IFDSA NP++G+RWW+ AEDPFQCLAAC++LS ALKSSSPH+ ISHLPIHQDGSC
Sbjct: 588 NHLPDIFDSAANPVDGNRWWINAEDPFQCLAACVDLSNALKSSSPHTAISHLPIHQDGSC 647
Query: 717 NGLQHYAALGRNTLEAAAVNLVAGEKPADVYSEIAVRVHEIMKRDSNKDPSKHPQALLAK 776
NGLQHYAALGR+ + AAAVNLV GEKPAD+YSEIA RV ++++ DS KDP+ LAK
Sbjct: 648 NGLQHYAALGRDYMGAAAVNLVPGEKPADIYSEIAARVLDVVREDSMKDPATDASVSLAK 707
Query: 777 ILIDQVDRKLVKQTVMTSVYGVTFVGAREQIKRRLEEKGHITDDRQLFAAACYAAKVTLT 836
+L+DQVDRKLVKQTVMTSVYGVTF+GAR+QI +RL+EKGHITDD+ L+ +CYA +VTL
Sbjct: 708 VLVDQVDRKLVKQTVMTSVYGVTFIGARQQIMKRLQEKGHITDDKLLYEVSCYATRVTLD 767
Query: 837 ALGEIFEAARSIMGWLGDCAKVIASENQPVRWTTPLGLPVVQPYCKNERHLIRTSLQVLA 896
ALG++F++AR+IM WLGDCAK+IAS+NQPV+WT+P+GLPVVQPY K + ++IRTSLQ LA
Sbjct: 768 ALGQMFQSARAIMAWLGDCAKMIASKNQPVKWTSPVGLPVVQPYKKYKNYMIRTSLQCLA 827
Query: 897 LQREGNLVKIRKQRTAFPPNFVHSLDGSHMMMTAVACRDAGLHFAGL 943
L+REG+ + ++Q+ AFPPNFVHSLD SHMMMTA+ C++AGLHFAG+
Sbjct: 828 LRREGDTIATQRQKAAFPPNFVHSLDSSHMMMTAITCKEAGLHFAGV 874
>gi|449447681|ref|XP_004141596.1| PREDICTED: DNA-directed RNA polymerase 2,
chloroplastic/mitochondrial-like [Cucumis sativus]
Length = 984
Score = 1058 bits (2737), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 501/785 (63%), Positives = 626/785 (79%), Gaps = 5/785 (0%)
Query: 163 KLQEYREMKKRKFNLLRRRQVKQETEAWERMVDEYKELEAKMIEKRLAPNLPHIKGLFLG 222
+L+ + M + K+N+LRRRQV E EAWE EY+EL M +++LAPNLP++K LFLG
Sbjct: 132 RLKPVKGMGQWKYNMLRRRQVTIEAEAWENAAKEYRELLVDMCKQKLAPNLPYVKSLFLG 191
Query: 223 WFGPLSEAIEREQKM-QRTKKQKAAYAPHIELLPADKVAVIVMHKMMGLVMAGHEDRCVQ 281
WF P +AI +EQ++ Q K+ +A YAP+ LPADK++VI MHK+MGL+M G E V+
Sbjct: 192 WFEPFQDAIIKEQELIQEGKRSRAPYAPYFLQLPADKMSVITMHKLMGLLMRGSEHGSVR 251
Query: 282 VVQAAVHIGMAIEQEIRIHSFLEKTK--NYKRKKIIADTEEVLSKEKELLRKRVNSLIKS 339
VVQAA IG AIEQE+RIH FLEK K + + D ++ KE+E LRK+V +LIK
Sbjct: 252 VVQAACAIGDAIEQEVRIHKFLEKKKERTHNKDNENNDQPDIERKEQERLRKKVTNLIKK 311
Query: 340 KRVMEAQKLLKN-EETKPWGRDTQAKLGSRLVELLIETAYVQHPVNPADYSPPDVRPAFR 398
K+ + A ++ K ++++PWGR+ +AK+G+RL+ELLI+TAY+Q P + PPD RPAF
Sbjct: 312 KKHLAAGQIAKRADDSRPWGRELKAKVGARLIELLIQTAYIQPPADQLADGPPDPRPAFV 371
Query: 399 HRFKTILKHPGQKTTKRYGVVECDPLVLEGLDRSAKHMLIPYVPMLVPPKKWKGYNKGGY 458
H KT +K G R GV+ECDPLV++GLD +A+ ++IPY+PML+PP KW+GY+KGG+
Sbjct: 372 HSLKTSVKD-GTNFMGRLGVIECDPLVVKGLDWTARQIVIPYMPMLMPPVKWRGYDKGGH 430
Query: 459 LFLPSYVMRTHGSRKQQEALKSVTGNCMKKVFEALDTLGSTKWRVNKQVLSVLESIWVSG 518
+ LPS+ MRTHG+++Q++A K + VFEALDTLG+TKWR+NK++L+V+E IW SG
Sbjct: 431 ILLPSFAMRTHGAKQQRDAFKRTPKQQLTPVFEALDTLGNTKWRINKRILNVVERIWTSG 490
Query: 519 GNIAGLVDRNDVLIPEKPLSEDMTEVQKWKWSVRKAKKINQERHSQRCDTELKLSVARRM 578
G++AGLVD++DV +PEKP +ED T ++KWKW VR KK N ERHSQRCD ELKL+VAR+M
Sbjct: 491 GHLAGLVDQDDVPLPEKPDTEDETLIKKWKWEVRSVKKENMERHSQRCDIELKLTVARKM 550
Query: 579 KDEEGFYYPHNLDFRGRAYPMHPHLNHLSSDVCRGVLEFAEGRPLGKSGLRWLKIHLANL 638
KDEEGFYYPHN+DFRGRAYPMHPHLNHL SD+CRG+LEFAEGR L KSGL WLKIHLANL
Sbjct: 551 KDEEGFYYPHNVDFRGRAYPMHPHLNHLGSDLCRGILEFAEGRSLRKSGLIWLKIHLANL 610
Query: 639 FSGGVEKLSHDGRLAFVENHLYEIFDSAENPINGSRWWLTAEDPFQCLAACINLSEALKS 698
F+GGV+KLSHDGR+ F+ENHL +IFDSA+ P+ G RWW+ AEDPFQ LA C+NL+EAL+S
Sbjct: 611 FAGGVDKLSHDGRMTFIENHLEDIFDSADRPLEGGRWWMNAEDPFQFLAGCMNLTEALRS 670
Query: 699 SSPHSVISHLPIHQDGSCNGLQHYAALGRNTLEAAAVNLVAGEKPADVYSEIAVRVHEIM 758
SSP + ISH+PIHQDGSCNGLQHYAALGR+ AAAVNLVAGEKPADVYS IA RV EI+
Sbjct: 671 SSPETYISHIPIHQDGSCNGLQHYAALGRDKSGAAAVNLVAGEKPADVYSGIAARVLEIL 730
Query: 759 KRDSNKDPSKHPQALLAKILIDQVDRKLVKQTVMTSVYGVTFVGAREQIKRRLEEKGHIT 818
KRD+ KDP P AL AKILIDQVDRKLVKQTVMTSVYGVT++GAR+QIKRRL+E+ I+
Sbjct: 731 KRDAQKDPETFPDALHAKILIDQVDRKLVKQTVMTSVYGVTYIGARDQIKRRLKERAAIS 790
Query: 819 DDRQLFAAACYAAKVTLTALGEIFEAARSIMGWLGDCAKVIASENQPVRWTTPLGLPVVQ 878
DD +LF +CYAAK+TL ALGE+F AAR IM WL DCAK+IAS+N+ VRWTTPLGLPVVQ
Sbjct: 791 DDSELFGCSCYAAKITLEALGEMFVAAREIMNWLSDCAKIIASKNETVRWTTPLGLPVVQ 850
Query: 879 PYCKNERHLIRTSLQVLALQREGNLVKIRKQRTAFPPNFVHSLDGSHMMMTAVACRDAGL 938
PY K H I+TSLQVL L+RE + + +QRTAFPPNFVHSLD SHMMMTAVAC+ AGL
Sbjct: 851 PYRKLGIHAIKTSLQVLTLRRETDKILSSRQRTAFPPNFVHSLDSSHMMMTAVACKRAGL 910
Query: 939 HFAGL 943
+FAG+
Sbjct: 911 NFAGV 915
>gi|21425663|emb|CAC95019.1| mitochondrial RNA polymerase [Nicotiana sylvestris]
Length = 1002
Score = 1056 bits (2732), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 506/774 (65%), Positives = 632/774 (81%), Gaps = 9/774 (1%)
Query: 174 KFNLLRRRQVKQETEAWERMVDEYKELEAKMIEKRLAPNLPHIKGLFLGWFGPLSEAIER 233
K+NLLRRRQ+K ETEAWE EY+EL M E++LAPNLP++K LFLGWF PL +AI
Sbjct: 165 KYNLLRRRQIKVETEAWEEAAKEYQELLMDMCEQKLAPNLPYMKSLFLGWFEPLRDAIAA 224
Query: 234 EQKMQRTKKQKAAYAPHIELLPADKVAVIVMHKMMGLVMAGHEDRCVQVVQAAVHIGMAI 293
EQK+ K + AYAP + LPA+ +AVI MHK+MGL+M G +VVQAA HIG AI
Sbjct: 225 EQKLCDEGKNRGAYAPFFDQLPAEMMAVITMHKLMGLLMTGGGTGSARVVQAASHIGEAI 284
Query: 294 EQEIRIHSFLEKTKNYKRKKIIADTEEV---LSKEKELLRKRVNSLIKSKRVMEAQKLLK 350
E E RIH FLEKTK K + D E+ + KE+E LRK+V L+K +++ + +K++K
Sbjct: 285 EHEARIHRFLEKTK--KSNALSGDLEDTPGDIMKERERLRKKVKILMKKQKLQQVRKIVK 342
Query: 351 NEET-KPWGRDTQAKLGSRLVELLIETAYVQHPVNPADYSPPDVRPAFRHRFKTILKHPG 409
++ KPWG+D K+G RL+++L+ETAY+Q P + D PPD+RPAF H KT+
Sbjct: 343 QQDDEKPWGQDNLVKVGCRLIQILMETAYIQPPNDQLDDCPPDIRPAFVHTLKTV---ET 399
Query: 410 QKTTKRYGVVECDPLVLEGLDRSAKHMLIPYVPMLVPPKKWKGYNKGGYLFLPSYVMRTH 469
K ++RYGV++CDPLV +GLD++A+HM+IPY+PMLVPP+ W GY+KG YLFLPSY+MRTH
Sbjct: 400 MKGSRRYGVIQCDPLVRKGLDKTARHMVIPYMPMLVPPQSWLGYDKGAYLFLPSYIMRTH 459
Query: 470 GSRKQQEALKSVTGNCMKKVFEALDTLGSTKWRVNKQVLSVLESIWVSGGNIAGLVDRND 529
G+++Q+EA+K V ++ VF+ALDTLG+TKWR+N++VL +++ IW SGG +A LVDR D
Sbjct: 460 GAKQQREAVKRVPKKQLEPVFQALDTLGNTKWRLNRKVLGIVDRIWASGGRLADLVDRED 519
Query: 530 VLIPEKPLSEDMTEVQKWKWSVRKAKKINQERHSQRCDTELKLSVARRMKDEEGFYYPHN 589
V +PE+P +ED +++KWKW V+ KK N ERHSQRCD ELKL+VAR+MKDE+GFYYPHN
Sbjct: 520 VPLPEEPDAEDEAQIRKWKWKVKGVKKENCERHSQRCDIELKLAVARKMKDEDGFYYPHN 579
Query: 590 LDFRGRAYPMHPHLNHLSSDVCRGVLEFAEGRPLGKSGLRWLKIHLANLFSGGVEKLSHD 649
LDFRGRAYPMHP+LNHL SD+CRG+LEFAEGRPLGKSGLRWLKIHLAN++ GGV+KLS++
Sbjct: 580 LDFRGRAYPMHPYLNHLGSDLCRGILEFAEGRPLGKSGLRWLKIHLANVYGGGVDKLSYE 639
Query: 650 GRLAFVENHLYEIFDSAENPINGSRWWLTAEDPFQCLAACINLSEALKSSSPHSVISHLP 709
GR+AF ENH+ +IFDSAE P+ G RWWL AEDPFQCLA CIN++EAL+S SP + IS++P
Sbjct: 640 GRVAFSENHVEDIFDSAERPLEGKRWWLGAEDPFQCLATCINIAEALRSPSPETAISYMP 699
Query: 710 IHQDGSCNGLQHYAALGRNTLEAAAVNLVAGEKPADVYSEIAVRVHEIMKRDSNKDPSKH 769
IHQDGSCNGLQHYAALGR+TL AAAVNLVAG+KPADVYS IA RV +IMKRD+ KDP+
Sbjct: 700 IHQDGSCNGLQHYAALGRDTLGAAAVNLVAGDKPADVYSGIAARVLDIMKRDAAKDPAND 759
Query: 770 PQALLAKILIDQVDRKLVKQTVMTSVYGVTFVGAREQIKRRLEEKGHITDDRQLFAAACY 829
P + A++LI+QVDRKLVKQTVMTSVYGVT++GAR+QIKRRL+E+G I DD +LFAAACY
Sbjct: 760 PNVMRARLLINQVDRKLVKQTVMTSVYGVTYIGARDQIKRRLKERGVIEDDNELFAAACY 819
Query: 830 AAKVTLTALGEIFEAARSIMGWLGDCAKVIASENQPVRWTTPLGLPVVQPYCKNERHLIR 889
AAK TLTALGE+FEAARSIM WLGDCAK+IA EN PVRWTTPLGLPVVQPY K RHLI+
Sbjct: 820 AAKTTLTALGEMFEAARSIMSWLGDCAKIIAMENHPVRWTTPLGLPVVQPYRKLGRHLIK 879
Query: 890 TSLQVLALQREGNLVKIRKQRTAFPPNFVHSLDGSHMMMTAVACRDAGLHFAGL 943
TSLQ+L LQRE + V +++QRTAFPPNFVHSLDGSHMMMTA+AC+++GL FAG+
Sbjct: 880 TSLQILTLQRETDKVMVKRQRTAFPPNFVHSLDGSHMMMTAIACKESGLSFAGV 933
>gi|34925359|sp|Q93Y94.1|RPOT1_NICSY RecName: Full=DNA-directed RNA polymerase 1, mitochondrial;
AltName: Full=NsRpoT-A; AltName: Full=T7
bacteriophage-type single subunit RNA polymerase 1;
Flags: Precursor
gi|15824083|dbj|BAB69431.1| T7 bacteriophage-type single subunit RNA polymerase [Nicotiana
sylvestris]
Length = 1002
Score = 1056 bits (2730), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 505/774 (65%), Positives = 632/774 (81%), Gaps = 9/774 (1%)
Query: 174 KFNLLRRRQVKQETEAWERMVDEYKELEAKMIEKRLAPNLPHIKGLFLGWFGPLSEAIER 233
K+NLLRRRQ+K ETEAWE EY+EL M E++LAPNLP++K LFLGWF PL +AI
Sbjct: 165 KYNLLRRRQIKVETEAWEEAAKEYQELLMDMCEQKLAPNLPYMKSLFLGWFEPLRDAIAA 224
Query: 234 EQKMQRTKKQKAAYAPHIELLPADKVAVIVMHKMMGLVMAGHEDRCVQVVQAAVHIGMAI 293
EQK+ K + AYAP + LPA+ +AVI MHK+MGL+M G +VVQAA HIG AI
Sbjct: 225 EQKLCDEGKNRGAYAPFFDQLPAEMMAVITMHKLMGLLMTGGGTGSARVVQAASHIGEAI 284
Query: 294 EQEIRIHSFLEKTKNYKRKKIIADTEEV---LSKEKELLRKRVNSLIKSKRVMEAQKLLK 350
E E RIH FLEKTK K + D E+ + KE+E +RK+V L+K +++ + +K++K
Sbjct: 285 EHEARIHRFLEKTK--KSNALSGDLEDTPGDIMKERERVRKKVKILMKKQKLQQVRKIVK 342
Query: 351 NEET-KPWGRDTQAKLGSRLVELLIETAYVQHPVNPADYSPPDVRPAFRHRFKTILKHPG 409
++ KPWG+D K+G RL+++L+ETAY+Q P + D PPD+RPAF H KT+
Sbjct: 343 QQDDEKPWGQDNLVKVGCRLIQILMETAYIQPPNDQLDDCPPDIRPAFVHTLKTV---ET 399
Query: 410 QKTTKRYGVVECDPLVLEGLDRSAKHMLIPYVPMLVPPKKWKGYNKGGYLFLPSYVMRTH 469
K ++RYGV++CDPLV +GLD++A+HM+IPY+PMLVPP+ W GY+KG YLFLPSY+MRTH
Sbjct: 400 MKGSRRYGVIQCDPLVRKGLDKTARHMVIPYMPMLVPPQSWLGYDKGAYLFLPSYIMRTH 459
Query: 470 GSRKQQEALKSVTGNCMKKVFEALDTLGSTKWRVNKQVLSVLESIWVSGGNIAGLVDRND 529
G+++Q+EA+K V ++ VF+ALDTLG+TKWR+N++VL +++ IW SGG +A LVDR D
Sbjct: 460 GAKQQREAVKRVPKKQLEPVFQALDTLGNTKWRLNRKVLGIVDRIWASGGRLADLVDRED 519
Query: 530 VLIPEKPLSEDMTEVQKWKWSVRKAKKINQERHSQRCDTELKLSVARRMKDEEGFYYPHN 589
V +PE+P +ED +++KWKW V+ KK N ERHSQRCD ELKL+VAR+MKDE+GFYYPHN
Sbjct: 520 VPLPEEPDAEDEAQIRKWKWKVKGVKKENCERHSQRCDIELKLAVARKMKDEDGFYYPHN 579
Query: 590 LDFRGRAYPMHPHLNHLSSDVCRGVLEFAEGRPLGKSGLRWLKIHLANLFSGGVEKLSHD 649
LDFRGRAYPMHP+LNHL SD+CRG+LEFAEGRPLGKSGLRWLKIHLAN++ GGV+KLS++
Sbjct: 580 LDFRGRAYPMHPYLNHLGSDLCRGILEFAEGRPLGKSGLRWLKIHLANVYGGGVDKLSYE 639
Query: 650 GRLAFVENHLYEIFDSAENPINGSRWWLTAEDPFQCLAACINLSEALKSSSPHSVISHLP 709
GR+AF ENH+ +IFDSAE P+ G RWWL AEDPFQCLA CIN++EAL+S SP + IS++P
Sbjct: 640 GRVAFSENHVEDIFDSAERPLEGKRWWLGAEDPFQCLATCINIAEALRSPSPETAISYMP 699
Query: 710 IHQDGSCNGLQHYAALGRNTLEAAAVNLVAGEKPADVYSEIAVRVHEIMKRDSNKDPSKH 769
IHQDGSCNGLQHYAALGR+TL AAAVNLVAG+KPADVYS IA RV +IMKRD+ KDP+
Sbjct: 700 IHQDGSCNGLQHYAALGRDTLGAAAVNLVAGDKPADVYSGIAARVLDIMKRDAAKDPAND 759
Query: 770 PQALLAKILIDQVDRKLVKQTVMTSVYGVTFVGAREQIKRRLEEKGHITDDRQLFAAACY 829
P + A++LI+QVDRKLVKQTVMTSVYGVT++GAR+QIKRRL+E+G I DD +LFAAACY
Sbjct: 760 PNVMRARLLINQVDRKLVKQTVMTSVYGVTYIGARDQIKRRLKERGVIEDDNELFAAACY 819
Query: 830 AAKVTLTALGEIFEAARSIMGWLGDCAKVIASENQPVRWTTPLGLPVVQPYCKNERHLIR 889
AAK TLTALGE+FEAARSIM WLGDCAK+IA EN PVRWTTPLGLPVVQPY K RHLI+
Sbjct: 820 AAKTTLTALGEMFEAARSIMSWLGDCAKIIAMENHPVRWTTPLGLPVVQPYRKLGRHLIK 879
Query: 890 TSLQVLALQREGNLVKIRKQRTAFPPNFVHSLDGSHMMMTAVACRDAGLHFAGL 943
TSLQ+L LQRE + V +++QRTAFPPNFVHSLDGSHMMMTA+AC+++GL FAG+
Sbjct: 880 TSLQILTLQRETDKVMVKRQRTAFPPNFVHSLDGSHMMMTAIACKESGLSFAGV 933
>gi|5292165|gb|AAB01085.2| single-subunit RNA polymerase C [Triticum aestivum]
Length = 949
Score = 1055 bits (2728), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 485/769 (63%), Positives = 629/769 (81%), Gaps = 5/769 (0%)
Query: 178 LRRRQVKQETEAWERMVDEYKELEAKMIEKRLAPNLPHIKGLFLGWFGPLSEAIEREQKM 237
LR+RQVK ETEAW R +EY++LE +M+++ LAP LP++K LFLGWF PL +A+ R+Q +
Sbjct: 114 LRQRQVKAETEAWARAAEEYRQLEGEMLDRHLAPQLPYVKSLFLGWFEPLRDAVARDQDV 173
Query: 238 QRTKKQKAAYAPHIELLPADKVAVIVMHKMMGLVMAGHEDRC--VQVVQAAVHIGMAIEQ 295
QR K+ K YA ++ LLPA+KVAVIVMHKMMGL+M+ +D C V+VVQAA IG A+E+
Sbjct: 174 QRRKRVKHVYAKYLLLLPAEKVAVIVMHKMMGLLMSS-KDGCGSVRVVQAAHSIGEAVER 232
Query: 296 EIRIHSFLEKTKNYKRKKIIADTEEVLSKEKELLRKRVNSLIKSKRVMEAQKLLKNE-ET 354
E ++ +F +KT+ R K ++ + L KE+ RK V SL++ ++ EAQKL++ E E
Sbjct: 233 EYKVQAFFQKTRRKTRSKTESENDPGLDKEQAKCRKLVKSLVRRRKSTEAQKLVQQEIEL 292
Query: 355 KPWGRDTQAKLGSRLVELLIETAYVQHPVNPADYSPPDVRPAFRHRFKTILKHPGQKTTK 414
+ WG + Q KLG+RL+ELL+++A+VQ P + S PD RPAF+H + + G + K
Sbjct: 293 EEWGTEAQVKLGTRLIELLLDSAFVQSPADQTPDSSPDFRPAFKHVLRKPIVENG-RLKK 351
Query: 415 RYGVVECDPLVLEGLDRSAKHMLIPYVPMLVPPKKWKGYNKGGYLFLPSYVMRTHGSRKQ 474
++ V+ECDPLV EG + +A+H+ IPY+PMLVPP KWKGY+KGG+LFLPSYVMRTHG + Q
Sbjct: 352 KHFVIECDPLVHEGFESTARHVEIPYLPMLVPPTKWKGYDKGGHLFLPSYVMRTHGVKDQ 411
Query: 475 QEALKSVTGNCMKKVFEALDTLGSTKWRVNKQVLSVLESIWVSGGNIAGLVDRNDVLIPE 534
+EA+KSV ++KVFEALD LG TKWRVN++V V+E+IW GG IAGLVD+ ++ +PE
Sbjct: 412 KEAIKSVPRKQLRKVFEALDILGGTKWRVNRRVHDVVETIWSRGGGIAGLVDKGNIPLPE 471
Query: 535 KPLSEDMTEVQKWKWSVRKAKKINQERHSQRCDTELKLSVARRMKDEEGFYYPHNLDFRG 594
+P +ED E+QKWKWSV+K KK N+E H++RCDTELKLSVAR+M++E+GFYYPHNLDFRG
Sbjct: 472 QPETEDPDEIQKWKWSVKKTKKANRELHAERCDTELKLSVARKMREEDGFYYPHNLDFRG 531
Query: 595 RAYPMHPHLNHLSSDVCRGVLEFAEGRPLGKSGLRWLKIHLANLFSGGVEKLSHDGRLAF 654
RAYPMHPHL+HL SD+CRGVLE+AEGRPLGKSGLRWLKIHLAN + GG+EKLSH+ +L F
Sbjct: 532 RAYPMHPHLSHLGSDLCRGVLEYAEGRPLGKSGLRWLKIHLANKYGGGIEKLSHESKLTF 591
Query: 655 VENHLYEIFDSAENPINGSRWWLTAEDPFQCLAACINLSEALKSSSPHSVISHLPIHQDG 714
VE+HL +IFDSA NP++G+ WW+ AEDPFQCLAAC++LS AL+SSSPH +SHLPIHQDG
Sbjct: 592 VEDHLPDIFDSAANPVDGNCWWINAEDPFQCLAACMDLSNALESSSPHGAVSHLPIHQDG 651
Query: 715 SCNGLQHYAALGRNTLEAAAVNLVAGEKPADVYSEIAVRVHEIMKRDSNKDPSKHPQALL 774
SCNGLQHYAALGR+ + AAAVNLV GEKPAD+YSEIA RV ++++ DS KDP+ P L
Sbjct: 652 SCNGLQHYAALGRDYMGAAAVNLVPGEKPADIYSEIAARVLDVVREDSMKDPATDPSVPL 711
Query: 775 AKILIDQVDRKLVKQTVMTSVYGVTFVGAREQIKRRLEEKGHITDDRQLFAAACYAAKVT 834
AK+L+D+VDRKLVKQTVMTSVYGVTF+GAR+QI +RL+EKGHITDD+ L+ +CYA +VT
Sbjct: 712 AKVLVDEVDRKLVKQTVMTSVYGVTFIGARQQIMKRLQEKGHITDDKLLYDVSCYATRVT 771
Query: 835 LTALGEIFEAARSIMGWLGDCAKVIASENQPVRWTTPLGLPVVQPYCKNERHLIRTSLQV 894
L ALG++F++AR+IM WLGDCAK+IAS+NQPVRWT+P+GLPVVQPY K + ++IRTSLQ
Sbjct: 772 LDALGQMFQSARAIMAWLGDCAKMIASKNQPVRWTSPVGLPVVQPYKKYKNYMIRTSLQC 831
Query: 895 LALQREGNLVKIRKQRTAFPPNFVHSLDGSHMMMTAVACRDAGLHFAGL 943
LAL+REG+ + ++Q+ AFPPNFVHSLD SHMMMTA+ C++AGLHFAG+
Sbjct: 832 LALRREGDAIATQRQKAAFPPNFVHSLDSSHMMMTAITCKEAGLHFAGV 880
>gi|30698496|dbj|BAC76605.1| RpoT2 [Oryza sativa Japonica Group]
gi|37360971|dbj|BAC98394.1| T7 bacteriophage-type single subunit RNA polymerase [Oryza sativa
Japonica Group]
Length = 953
Score = 1054 bits (2725), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 486/775 (62%), Positives = 636/775 (82%), Gaps = 7/775 (0%)
Query: 171 KKRKFNLLRRRQVKQETEAWERMVDEYKELEAKMIEKRLAPNLPHIKGLFLGWFGPLSEA 230
+K + LR+RQVK ETEAW R DEY+ELE +M+++RLAP LP++K LFLGWF PL +A
Sbjct: 115 RKAEHRRLRQRQVKAETEAWARAADEYRELEREMLDRRLAPALPYVKSLFLGWFEPLRDA 174
Query: 231 IEREQKMQRTKKQKAAYAPHIELLPADKVAVIVMHKMMGLVMAGHED-RCVQVVQAAVHI 289
I R+Q++QR K+ K YA ++ LLPADKVAVIVMHKMMGL+M+ + V+VVQAA I
Sbjct: 175 IARDQEVQRRKRVKHVYAKYLLLLPADKVAVIVMHKMMGLLMSSKDGVASVRVVQAAHCI 234
Query: 290 GMAIEQEIRIHSFLEKTKNYKRKKIIADTEEVLSKEKELLRKRVNSLIKSKRVMEAQKLL 349
G A+E+E ++ +F +KT RKK + + L KE+ RKRV SL++ +++ EAQK++
Sbjct: 235 GEAVEREFKVQTFFQKT----RKKSAGENDLALEKEQAKCRKRVKSLVRRRKLTEAQKIV 290
Query: 350 KNE-ETKPWGRDTQAKLGSRLVELLIETAYVQHPVNPADYSPPDVRPAFRHRFKTILKHP 408
+ E E + WG ++Q KLG+RL+ELL+++A+VQ P + S PD+RPAF+H + +
Sbjct: 291 QQEIELEEWGTESQVKLGTRLIELLLDSAFVQSPADQTPESSPDIRPAFKHVLRQPIVEN 350
Query: 409 GQKTTKRYGVVECDPLVLEGLDRSAKHMLIPYVPMLVPPKKWKGYNKGGYLFLPSYVMRT 468
G + K++ V+ECDPLV EG + +A+H+ IPY+PMLV PKKWKGY+ GGYLFLPSY+MRT
Sbjct: 351 G-RLKKKHWVIECDPLVHEGFESTARHVEIPYLPMLVTPKKWKGYDTGGYLFLPSYIMRT 409
Query: 469 HGSRKQQEALKSVTGNCMKKVFEALDTLGSTKWRVNKQVLSVLESIWVSGGNIAGLVDRN 528
HG + Q+EA+KSV ++KVFEALDTLGSTKWRVN++V + +E+IW GG IAGLVD+
Sbjct: 410 HGVKDQKEAIKSVPRKQLRKVFEALDTLGSTKWRVNRRVHNAVETIWSRGGGIAGLVDKE 469
Query: 529 DVLIPEKPLSEDMTEVQKWKWSVRKAKKINQERHSQRCDTELKLSVARRMKDEEGFYYPH 588
++ +PE+P +ED E+QKWKWS++KAKK N+E H++RCDTELKLSVAR+M++E+GFYYPH
Sbjct: 470 NIPLPERPETEDPDEIQKWKWSLKKAKKANRELHAERCDTELKLSVARKMREEDGFYYPH 529
Query: 589 NLDFRGRAYPMHPHLNHLSSDVCRGVLEFAEGRPLGKSGLRWLKIHLANLFSGGVEKLSH 648
NLDFRGRAYPMH HL+HL SD+CRGVLE+AEGRPLGKSGLRWLKIHLAN + GG+EKLSH
Sbjct: 530 NLDFRGRAYPMHAHLSHLGSDLCRGVLEYAEGRPLGKSGLRWLKIHLANKYGGGIEKLSH 589
Query: 649 DGRLAFVENHLYEIFDSAENPINGSRWWLTAEDPFQCLAACINLSEALKSSSPHSVISHL 708
+ ++AFVEN L +IFDSA NP++G+ WW+ AEDPFQCLAAC++LS+ALKSSSP +SHL
Sbjct: 590 EDKVAFVENQLPDIFDSATNPVDGNCWWMNAEDPFQCLAACMDLSDALKSSSPQCAVSHL 649
Query: 709 PIHQDGSCNGLQHYAALGRNTLEAAAVNLVAGEKPADVYSEIAVRVHEIMKRDSNKDPSK 768
PIHQDGSCNGLQHYAALGR+ + AAAVNLV G+KPAD+YSEIA RV ++++ DS +DP+
Sbjct: 650 PIHQDGSCNGLQHYAALGRDYMGAAAVNLVPGDKPADIYSEIAARVLDVVREDSMEDPAT 709
Query: 769 HPQALLAKILIDQVDRKLVKQTVMTSVYGVTFVGAREQIKRRLEEKGHITDDRQLFAAAC 828
+P A LA++L+DQVDRKLVKQTVMTSVYGVT++GAR+QI +RL+EKG ITDD+ L+ +C
Sbjct: 710 NPTASLARVLVDQVDRKLVKQTVMTSVYGVTYIGARQQITKRLQEKGLITDDKLLYEVSC 769
Query: 829 YAAKVTLTALGEIFEAARSIMGWLGDCAKVIASENQPVRWTTPLGLPVVQPYCKNERHLI 888
YA +VTL ALG++F++AR IM WLGDCAK+IASEN PV+WT+P+GLPVVQPY K + ++I
Sbjct: 770 YATRVTLDALGQMFQSARGIMAWLGDCAKMIASENHPVKWTSPVGLPVVQPYKKYKNYMI 829
Query: 889 RTSLQVLALQREGNLVKIRKQRTAFPPNFVHSLDGSHMMMTAVACRDAGLHFAGL 943
RTSLQ LAL+REG+ + +++Q+ AFPPNFVHSLD SHMMMTA+AC+ AGLHFAG+
Sbjct: 830 RTSLQCLALRREGDAIALQRQKAAFPPNFVHSLDSSHMMMTAIACKKAGLHFAGV 884
>gi|88933965|sp|Q8L6J5.2|RPO1B_TOBAC RecName: Full=DNA-directed RNA polymerase 1B, mitochondrial;
AltName: Full=NictaRpoT1-tom; AltName: Full=T7
bacteriophage-type single subunit RNA polymerase 1B;
Flags: Precursor
Length = 1002
Score = 1054 bits (2725), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 506/774 (65%), Positives = 629/774 (81%), Gaps = 9/774 (1%)
Query: 174 KFNLLRRRQVKQETEAWERMVDEYKELEAKMIEKRLAPNLPHIKGLFLGWFGPLSEAIER 233
K+N LRRRQ+K ETEAWE EY+EL M E++LAPNLP++K LFLGWF PL +AI
Sbjct: 165 KYNFLRRRQIKVETEAWEEAAKEYQELLMDMCEQKLAPNLPYMKSLFLGWFEPLRDAIAA 224
Query: 234 EQKMQRTKKQKAAYAPHIELLPADKVAVIVMHKMMGLVMAGHEDRCVQVVQAAVHIGMAI 293
EQK+ K + AYAP + LPA+ +AVI MHK+MGL+M G +VVQAA +IG AI
Sbjct: 225 EQKLCDEGKNRGAYAPFFDQLPAEMMAVITMHKLMGLLMTGGGTGSARVVQAASYIGEAI 284
Query: 294 EQEIRIHSFLEKTKNYKRKKIIADTEEV---LSKEKELLRKRVNSLIKSKRVMEAQKLLK 350
E E RIH FLEKTK K + D EE + KE+E LRK+V L+K +++ + +K++K
Sbjct: 285 EHEARIHRFLEKTK--KSNALSGDLEETPGDMMKERERLRKKVKILMKKQKLRQVRKIVK 342
Query: 351 NEET-KPWGRDTQAKLGSRLVELLIETAYVQHPVNPADYSPPDVRPAFRHRFKTILKHPG 409
++ KPWG+D K+G RL+++L+ETAY+Q P + D PPD+RPAF H KT+
Sbjct: 343 QQDDEKPWGQDNLVKVGCRLIQILMETAYIQPPNDQLDDGPPDIRPAFVHTLKTV---ET 399
Query: 410 QKTTKRYGVVECDPLVLEGLDRSAKHMLIPYVPMLVPPKKWKGYNKGGYLFLPSYVMRTH 469
K ++RYGV++CDPLV +GLD++A+HM+IPY+PMLVPP+ W GY+KGGYLFLPSY+MRTH
Sbjct: 400 MKGSRRYGVIQCDPLVRKGLDKTARHMVIPYMPMLVPPQSWLGYDKGGYLFLPSYIMRTH 459
Query: 470 GSRKQQEALKSVTGNCMKKVFEALDTLGSTKWRVNKQVLSVLESIWVSGGNIAGLVDRND 529
G+++Q+EA+K V ++ VF+ALDTLG+TKWRVN++VL +++ IW SGG +A LVDR D
Sbjct: 460 GAKQQREAVKRVPKKQLEPVFQALDTLGNTKWRVNRKVLGIVDRIWASGGRLADLVDRED 519
Query: 530 VLIPEKPLSEDMTEVQKWKWSVRKAKKINQERHSQRCDTELKLSVARRMKDEEGFYYPHN 589
V +PE P +ED E++KWKW V+ KK N ERHSQRCD ELKL+VAR+MKDE+GFYYPHN
Sbjct: 520 VPLPEAPDTEDEAEIRKWKWKVKGVKKENCERHSQRCDIELKLAVARKMKDEDGFYYPHN 579
Query: 590 LDFRGRAYPMHPHLNHLSSDVCRGVLEFAEGRPLGKSGLRWLKIHLANLFSGGVEKLSHD 649
LDFRGRAYPMHP+LNHL SD+CRG+LEFAEGRPLG SGLRWLKIHLAN++ GGV+KLS++
Sbjct: 580 LDFRGRAYPMHPYLNHLGSDLCRGILEFAEGRPLGTSGLRWLKIHLANVYGGGVDKLSYE 639
Query: 650 GRLAFVENHLYEIFDSAENPINGSRWWLTAEDPFQCLAACINLSEALKSSSPHSVISHLP 709
GR+AF ENHL +IFDSAE P+ G RWWL AEDPFQCLA CIN++EAL+S SP + IS++P
Sbjct: 640 GRVAFSENHLEDIFDSAERPLEGKRWWLGAEDPFQCLATCINIAEALRSPSPETAISYMP 699
Query: 710 IHQDGSCNGLQHYAALGRNTLEAAAVNLVAGEKPADVYSEIAVRVHEIMKRDSNKDPSKH 769
IHQDGSCNGLQHYAALGR+ L AAAVNLVAG+KPADVYS IA RV +IMKRD+ KDP+
Sbjct: 700 IHQDGSCNGLQHYAALGRDKLGAAAVNLVAGDKPADVYSGIAARVLDIMKRDAAKDPAND 759
Query: 770 PQALLAKILIDQVDRKLVKQTVMTSVYGVTFVGAREQIKRRLEEKGHITDDRQLFAAACY 829
P + A++LI+QVDRKLVKQTVMTSVYGVT++GAR+QIK+RL+E+G I DD +LFAAACY
Sbjct: 760 PNVMRARLLINQVDRKLVKQTVMTSVYGVTYIGARDQIKKRLKERGVIEDDNELFAAACY 819
Query: 830 AAKVTLTALGEIFEAARSIMGWLGDCAKVIASENQPVRWTTPLGLPVVQPYCKNERHLIR 889
AAK TLTALGE+FEAARSIM WLGDCAK+IA EN PVRWTTPLGLPVVQPY K RHLI+
Sbjct: 820 AAKTTLTALGEMFEAARSIMSWLGDCAKIIAMENHPVRWTTPLGLPVVQPYRKLGRHLIK 879
Query: 890 TSLQVLALQREGNLVKIRKQRTAFPPNFVHSLDGSHMMMTAVACRDAGLHFAGL 943
TSLQ+L LQRE + V +++QRTAFPPNFVHSLDGSHMMMTA+AC+++GL FAG+
Sbjct: 880 TSLQILTLQRETDKVMVKRQRTAFPPNFVHSLDGSHMMMTAIACKESGLSFAGV 933
>gi|21425637|emb|CAC82574.2| phage-type RNA polymerase [Nicotiana tabacum]
Length = 1002
Score = 1053 bits (2723), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 506/774 (65%), Positives = 628/774 (81%), Gaps = 9/774 (1%)
Query: 174 KFNLLRRRQVKQETEAWERMVDEYKELEAKMIEKRLAPNLPHIKGLFLGWFGPLSEAIER 233
K+N LRRRQ+K ETEAWE EY+EL M E++LAPNLP++K LFLGWF PL +AI
Sbjct: 165 KYNFLRRRQIKVETEAWEEAAKEYQELLMDMCEQKLAPNLPYMKSLFLGWFEPLRDAIAA 224
Query: 234 EQKMQRTKKQKAAYAPHIELLPADKVAVIVMHKMMGLVMAGHEDRCVQVVQAAVHIGMAI 293
EQK+ K + AYAP + LPA+ +AVI MHK+MGL+M G +VVQAA +IG AI
Sbjct: 225 EQKLCDEGKNRGAYAPFFDQLPAEMMAVITMHKLMGLLMTGGGTGSARVVQAASYIGEAI 284
Query: 294 EQEIRIHSFLEKTKNYKRKKIIADTEEV---LSKEKELLRKRVNSLIKSKRVMEAQKLLK 350
E E RIH FLEKTK K + D EE + KE+E LRK+V L+K +++ + +K++K
Sbjct: 285 EHEARIHRFLEKTK--KSNALSGDLEETPGDMMKERERLRKKVKILMKKQKLRQVRKIVK 342
Query: 351 NEET-KPWGRDTQAKLGSRLVELLIETAYVQHPVNPADYSPPDVRPAFRHRFKTILKHPG 409
++ KPWG+D K+G RL+++L+ETAY+Q P + D PPD+RPAF H KT+
Sbjct: 343 QQDDEKPWGQDNLVKVGCRLIQILMETAYIQPPNDQLDDGPPDIRPAFVHTLKTV---ET 399
Query: 410 QKTTKRYGVVECDPLVLEGLDRSAKHMLIPYVPMLVPPKKWKGYNKGGYLFLPSYVMRTH 469
K ++RYGV++CDPLV +GLD++A+HM+IPY+PMLVPP+ W GY+KGGYLFLPSY+MRTH
Sbjct: 400 MKGSRRYGVIQCDPLVRKGLDKTARHMVIPYMPMLVPPQSWLGYDKGGYLFLPSYIMRTH 459
Query: 470 GSRKQQEALKSVTGNCMKKVFEALDTLGSTKWRVNKQVLSVLESIWVSGGNIAGLVDRND 529
G+++Q+EA+K V ++ VF+ALDTLG+TKWRVN++VL ++ IW SGG +A LVDR D
Sbjct: 460 GAKQQREAVKRVPKKQLEPVFQALDTLGNTKWRVNRKVLGIVNRIWASGGRLADLVDRED 519
Query: 530 VLIPEKPLSEDMTEVQKWKWSVRKAKKINQERHSQRCDTELKLSVARRMKDEEGFYYPHN 589
V +PE P +ED E++KWKW V+ KK N ERHSQRCD ELKL+VAR+MKDE+GFYYPHN
Sbjct: 520 VPLPEAPDTEDEAEIRKWKWKVKGVKKENCERHSQRCDIELKLAVARKMKDEDGFYYPHN 579
Query: 590 LDFRGRAYPMHPHLNHLSSDVCRGVLEFAEGRPLGKSGLRWLKIHLANLFSGGVEKLSHD 649
LDFRGRAYPMHP+LNHL SD+CRG+LEFAEGRPLG SGLRWLKIHLAN++ GGV+KLS++
Sbjct: 580 LDFRGRAYPMHPYLNHLGSDLCRGILEFAEGRPLGTSGLRWLKIHLANVYGGGVDKLSYE 639
Query: 650 GRLAFVENHLYEIFDSAENPINGSRWWLTAEDPFQCLAACINLSEALKSSSPHSVISHLP 709
GR+AF ENHL +IFDSAE P+ G RWWL AEDPFQCLA CIN++EAL+S SP + IS++P
Sbjct: 640 GRVAFSENHLEDIFDSAERPLEGKRWWLGAEDPFQCLATCINIAEALRSPSPETAISYMP 699
Query: 710 IHQDGSCNGLQHYAALGRNTLEAAAVNLVAGEKPADVYSEIAVRVHEIMKRDSNKDPSKH 769
IHQDGSCNGLQHYAALGR+ L AAAVNLVAG+KPADVYS IA RV +IMKRD+ KDP+
Sbjct: 700 IHQDGSCNGLQHYAALGRDKLGAAAVNLVAGDKPADVYSGIAARVLDIMKRDAAKDPAND 759
Query: 770 PQALLAKILIDQVDRKLVKQTVMTSVYGVTFVGAREQIKRRLEEKGHITDDRQLFAAACY 829
P + A++LI+QVDRKLVKQTVMTSVYGVT++GAR+QIK+RL+E+G I DD +LFAAACY
Sbjct: 760 PNVMRARLLINQVDRKLVKQTVMTSVYGVTYIGARDQIKKRLKERGVIEDDNELFAAACY 819
Query: 830 AAKVTLTALGEIFEAARSIMGWLGDCAKVIASENQPVRWTTPLGLPVVQPYCKNERHLIR 889
AAK TLTALGE+FEAARSIM WLGDCAK+IA EN PVRWTTPLGLPVVQPY K RHLI+
Sbjct: 820 AAKTTLTALGEMFEAARSIMSWLGDCAKIIAMENHPVRWTTPLGLPVVQPYRKLGRHLIK 879
Query: 890 TSLQVLALQREGNLVKIRKQRTAFPPNFVHSLDGSHMMMTAVACRDAGLHFAGL 943
TSLQ+L LQRE + V +++QRTAFPPNFVHSLDGSHMMMTA+AC+++GL FAG+
Sbjct: 880 TSLQILTLQRETDKVMVKRQRTAFPPNFVHSLDGSHMMMTAIACKESGLSFAGV 933
>gi|34481851|emb|CAD45446.1| DNA-directed RNA polymerase, chloroplast precursor [Hordeum vulgare
subsp. vulgare]
Length = 948
Score = 1050 bits (2716), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 483/769 (62%), Positives = 628/769 (81%), Gaps = 5/769 (0%)
Query: 178 LRRRQVKQETEAWERMVDEYKELEAKMIEKRLAPNLPHIKGLFLGWFGPLSEAIEREQKM 237
LR+RQVK ETEAW R +EY++LE +M+++ LAP LP++K LFLGWF PL +A+ R+Q +
Sbjct: 113 LRQRQVKAETEAWARAAEEYRQLEREMLDRNLAPQLPYVKSLFLGWFEPLRDAVARDQDV 172
Query: 238 QRTKKQKAAYAPHIELLPADKVAVIVMHKMMGLVMAGHEDRC--VQVVQAAVHIGMAIEQ 295
QR K+ K YA ++ LLP +KVAVIVMHKMMGL+M+ +D C V+VVQAA IG A+E+
Sbjct: 173 QRRKRVKHVYAKYLLLLPPEKVAVIVMHKMMGLLMSS-KDGCGSVRVVQAAHSIGEAVER 231
Query: 296 EIRIHSFLEKTKNYKRKKIIADTEEVLSKEKELLRKRVNSLIKSKRVMEAQKLLKNE-ET 354
E ++ +F +KT+ R K ++ + L KE+ RK V SL++ +++ EAQKL++ E E
Sbjct: 232 EYKVQAFFQKTRRKTRSKNESENDPALDKEQAKCRKLVKSLVRRRKLTEAQKLVQQEIEL 291
Query: 355 KPWGRDTQAKLGSRLVELLIETAYVQHPVNPADYSPPDVRPAFRHRFKTILKHPGQKTTK 414
+ WG + Q KLG+RL+ELL+++A+VQ P N + PD RPAF+H + + G + K
Sbjct: 292 EEWGAEAQVKLGTRLIELLLDSAFVQSPANQTPDNSPDFRPAFKHVLRKPIVENG-RLKK 350
Query: 415 RYGVVECDPLVLEGLDRSAKHMLIPYVPMLVPPKKWKGYNKGGYLFLPSYVMRTHGSRKQ 474
++ V+ECDPLV EG + +A+H+ IPY+PMLVPP KWKGY+KGG+LFLPSYVMRTHG + Q
Sbjct: 351 KHFVIECDPLVHEGFESTARHVEIPYLPMLVPPTKWKGYDKGGHLFLPSYVMRTHGVKDQ 410
Query: 475 QEALKSVTGNCMKKVFEALDTLGSTKWRVNKQVLSVLESIWVSGGNIAGLVDRNDVLIPE 534
+EA+KSV ++KVFEALD LG TKWRVN++V V+E+IW GG IAGLVD+ ++ +PE
Sbjct: 411 KEAIKSVPRKQLRKVFEALDILGGTKWRVNRRVHDVVETIWSRGGGIAGLVDKENIPLPE 470
Query: 535 KPLSEDMTEVQKWKWSVRKAKKINQERHSQRCDTELKLSVARRMKDEEGFYYPHNLDFRG 594
+P +ED E+QKW+WSV+K KK N+E H++RCDTELKLSVAR+M++E+GFYYPHNLDFRG
Sbjct: 471 RPETEDPDEIQKWRWSVKKTKKTNRELHAERCDTELKLSVARKMREEDGFYYPHNLDFRG 530
Query: 595 RAYPMHPHLNHLSSDVCRGVLEFAEGRPLGKSGLRWLKIHLANLFSGGVEKLSHDGRLAF 654
RAYPMHPHL+HL SD+CRGVLE+ EGRPLGKSGLRWLKIHLAN + GG+EKL+H+ +LAF
Sbjct: 531 RAYPMHPHLSHLGSDLCRGVLEYGEGRPLGKSGLRWLKIHLANKYGGGIEKLTHESKLAF 590
Query: 655 VENHLYEIFDSAENPINGSRWWLTAEDPFQCLAACINLSEALKSSSPHSVISHLPIHQDG 714
VE+ L IFDSA NP++G+ WW+ AEDPFQCLAACI+LS+ALKSSSPH+ +SHLPIHQDG
Sbjct: 591 VEDRLPAIFDSAANPVDGNCWWINAEDPFQCLAACIDLSDALKSSSPHAAVSHLPIHQDG 650
Query: 715 SCNGLQHYAALGRNTLEAAAVNLVAGEKPADVYSEIAVRVHEIMKRDSNKDPSKHPQALL 774
SCNGLQHYAALGR+ + AAAVNLV GEKPAD+YSEIA RV +++ DS KDP+ P L
Sbjct: 651 SCNGLQHYAALGRDYMGAAAVNLVPGEKPADIYSEIAARVLNVVREDSMKDPATDPSVPL 710
Query: 775 AKILIDQVDRKLVKQTVMTSVYGVTFVGAREQIKRRLEEKGHITDDRQLFAAACYAAKVT 834
A++L+DQVDRKLVKQTVMTSVYGVTF+GAR+QI +RL+EKGHITD++ L+ +CYAA+VT
Sbjct: 711 ARVLVDQVDRKLVKQTVMTSVYGVTFIGARQQIMKRLQEKGHITDEKLLYDVSCYAARVT 770
Query: 835 LTALGEIFEAARSIMGWLGDCAKVIASENQPVRWTTPLGLPVVQPYCKNERHLIRTSLQV 894
L ALG++F++AR IM WLGDCAK+IAS+NQPVRWT+P+GLPVVQPY K + ++IRTSLQ
Sbjct: 771 LDALGQMFQSARGIMAWLGDCAKMIASKNQPVRWTSPVGLPVVQPYKKYKNYMIRTSLQC 830
Query: 895 LALQREGNLVKIRKQRTAFPPNFVHSLDGSHMMMTAVACRDAGLHFAGL 943
LAL+REG+ + ++Q+ AFPPNFVHSLD SHMMMTA+ C++AGLHFAG+
Sbjct: 831 LALRREGDAIATQRQKAAFPPNFVHSLDSSHMMMTAITCKEAGLHFAGV 879
>gi|34481849|emb|CAD45445.1| DNA-directed RNA polymerase, chloroplast precursor [Hordeum vulgare
subsp. vulgare]
Length = 948
Score = 1047 bits (2708), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 482/769 (62%), Positives = 627/769 (81%), Gaps = 5/769 (0%)
Query: 178 LRRRQVKQETEAWERMVDEYKELEAKMIEKRLAPNLPHIKGLFLGWFGPLSEAIEREQKM 237
LR+RQVK ETEAW R +EY++LE +M+++ LAP LP++K LFLGWF PL +A+ R+Q +
Sbjct: 113 LRQRQVKAETEAWARAAEEYRQLEREMLDRNLAPQLPYVKSLFLGWFEPLRDAVARDQDV 172
Query: 238 QRTKKQKAAYAPHIELLPADKVAVIVMHKMMGLVMAGHEDRC--VQVVQAAVHIGMAIEQ 295
QR K+ K YA ++ LLP +KVAVIVMHKMMGL+M+ +D C V+VVQAA IG A+E+
Sbjct: 173 QRRKRVKHVYAKYLLLLPPEKVAVIVMHKMMGLLMSS-KDGCGSVRVVQAAHSIGEAVER 231
Query: 296 EIRIHSFLEKTKNYKRKKIIADTEEVLSKEKELLRKRVNSLIKSKRVMEAQKLLKNE-ET 354
E ++ +F +KT+ R K ++ + L KE+ RK V SL++ +++ EAQKL++ E E
Sbjct: 232 EYKVQAFFQKTRRKTRSKNESENDPALDKEQAKCRKLVKSLVRRRKLTEAQKLVQQEIEL 291
Query: 355 KPWGRDTQAKLGSRLVELLIETAYVQHPVNPADYSPPDVRPAFRHRFKTILKHPGQKTTK 414
+ WG + Q KLG+RL+ELL+++A+VQ P N + PD RPAF+H + + G + K
Sbjct: 292 EEWGAEAQVKLGTRLIELLLDSAFVQSPANQTPDNSPDFRPAFKHVLRKPIVENG-RLKK 350
Query: 415 RYGVVECDPLVLEGLDRSAKHMLIPYVPMLVPPKKWKGYNKGGYLFLPSYVMRTHGSRKQ 474
++ V+ECDPLV EG + +A+H+ IPY+PMLVPP KWKGY+KGG+LFLPSYVMRTHG + Q
Sbjct: 351 KHFVIECDPLVHEGFESTARHVEIPYLPMLVPPTKWKGYDKGGHLFLPSYVMRTHGVKDQ 410
Query: 475 QEALKSVTGNCMKKVFEALDTLGSTKWRVNKQVLSVLESIWVSGGNIAGLVDRNDVLIPE 534
+EA+KSV ++KVFEALD LG TKWRVN++V V+E+IW GG IAGLVD+ ++ +PE
Sbjct: 411 KEAIKSVPRKQLRKVFEALDILGGTKWRVNRRVHDVVETIWSRGGGIAGLVDKENIPLPE 470
Query: 535 KPLSEDMTEVQKWKWSVRKAKKINQERHSQRCDTELKLSVARRMKDEEGFYYPHNLDFRG 594
+P +ED E+QKW+WSV+K KK N+E H++RCDTELKLSVAR+M++E+GFYYPHNLDFRG
Sbjct: 471 RPETEDPDEIQKWRWSVKKTKKTNRELHAERCDTELKLSVARKMREEDGFYYPHNLDFRG 530
Query: 595 RAYPMHPHLNHLSSDVCRGVLEFAEGRPLGKSGLRWLKIHLANLFSGGVEKLSHDGRLAF 654
RAYPMHPHL+HL SD+CRGVLE+ EGRPLGKSGLRWLKIHLAN + GG+EKL+H+ +LAF
Sbjct: 531 RAYPMHPHLSHLGSDLCRGVLEYGEGRPLGKSGLRWLKIHLANKYGGGIEKLTHESKLAF 590
Query: 655 VENHLYEIFDSAENPINGSRWWLTAEDPFQCLAACINLSEALKSSSPHSVISHLPIHQDG 714
VE+ L IFDSA NP++G+ WW+ AED FQCLAACI+LS+ALKSSSPH+ +SHLPIHQDG
Sbjct: 591 VEDRLPAIFDSAANPVDGNCWWINAEDSFQCLAACIDLSDALKSSSPHAAVSHLPIHQDG 650
Query: 715 SCNGLQHYAALGRNTLEAAAVNLVAGEKPADVYSEIAVRVHEIMKRDSNKDPSKHPQALL 774
SCNGLQHYAALGR+ + AAAVNLV GEKPAD+YSEIA RV +++ DS KDP+ P L
Sbjct: 651 SCNGLQHYAALGRDYMGAAAVNLVPGEKPADIYSEIAARVLNVVREDSMKDPATDPSVPL 710
Query: 775 AKILIDQVDRKLVKQTVMTSVYGVTFVGAREQIKRRLEEKGHITDDRQLFAAACYAAKVT 834
A++L+DQVDRKLVKQTVMTSVYGVTF+GAR+QI +RL+EKGHITD++ L+ +CYAA+VT
Sbjct: 711 ARVLVDQVDRKLVKQTVMTSVYGVTFIGARQQIMKRLQEKGHITDEKLLYDVSCYAARVT 770
Query: 835 LTALGEIFEAARSIMGWLGDCAKVIASENQPVRWTTPLGLPVVQPYCKNERHLIRTSLQV 894
L ALG++F++AR IM WLGDCAK+IAS+NQPVRWT+P+GLPVVQPY K + ++IRTSLQ
Sbjct: 771 LDALGQMFQSARGIMAWLGDCAKMIASKNQPVRWTSPVGLPVVQPYKKYKNYMIRTSLQC 830
Query: 895 LALQREGNLVKIRKQRTAFPPNFVHSLDGSHMMMTAVACRDAGLHFAGL 943
LAL+REG+ + ++Q+ AFPPNFVHSLD SHMMMTA+ C++AGLHFAG+
Sbjct: 831 LALRREGDAIATQRQKAAFPPNFVHSLDSSHMMMTAITCKEAGLHFAGV 879
>gi|356523672|ref|XP_003530460.1| PREDICTED: DNA-directed RNA polymerase 2B,
chloroplastic/mitochondrial-like [Glycine max]
Length = 1015
Score = 1043 bits (2698), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 507/777 (65%), Positives = 626/777 (80%), Gaps = 8/777 (1%)
Query: 174 KFNLLRRRQVKQETEAWERMVDEYKELEAKMIEKRLAPNLPHIKGLFLGWFGPLSEAIER 233
++ LRRRQVK ETE WE EY+EL M E +LAPNLP++K LFLGWF PL +AI +
Sbjct: 171 RYQELRRRQVKIETETWEEAAKEYRELLMDMCEHKLAPNLPYMKSLFLGWFEPLRDAIVK 230
Query: 234 EQKMQRTKKQKAAYAPHIELLPADKVAVIVMHKMMGLVMAGHEDRCV---QVVQAAVHIG 290
EQ+M K + AY P+ LPADK+AVI MHK+MGL+M G E V +VVQAA IG
Sbjct: 231 EQEMYGEGKNRTAYVPYFVQLPADKMAVIAMHKLMGLLMTGTEHATVGTARVVQAACGIG 290
Query: 291 MAIEQEIRIHSFLEKTKNYKRKKIIAD--TEEVLS-KEKELLRKRVNSLIKSKRVMEAQK 347
AIE E+RIH FLEKTK K + + +E V KE++ LRK+V L+K ++++ +
Sbjct: 291 DAIENEVRIHKFLEKTKKKKGDRSKKNKASESVADIKEEQKLRKKVIDLMKKQKLVAVRG 350
Query: 348 LLKN-EETKPWGRDTQAKLGSRLVELLIETAYVQHPVNPADYSPPDVRPAFRHRFKTILK 406
L+K ++TKPWG + K+GSRL+ELL++TAY+Q P + + PD+RPAF H F+T+ K
Sbjct: 351 LVKGKDDTKPWGAAIKTKVGSRLIELLMQTAYIQPPPDQLLDAAPDIRPAFVHSFRTVAK 410
Query: 407 HPGQKTTKRYGVVECDPLVLEGLDRSAKHMLIPYVPMLVPPKKWKGYNKGGYLFLPSYVM 466
K +KRYG+V+CDPL+L+GL+R+AK+M+IPY+PMLVPP W GY+KGG+LFLPSYVM
Sbjct: 411 -VSAKASKRYGIVQCDPLILKGLERTAKNMVIPYMPMLVPPVNWSGYDKGGHLFLPSYVM 469
Query: 467 RTHGSRKQQEALKSVTGNCMKKVFEALDTLGSTKWRVNKQVLSVLESIWVSGGNIAGLVD 526
RTHG+R+Q+EA+K ++ VFEALDTLG TKWRVNK+VLSV++ IW SGG IA LVD
Sbjct: 470 RTHGARQQREAVKRAPRKQLEPVFEALDTLGHTKWRVNKKVLSVVDRIWASGGRIADLVD 529
Query: 527 RNDVLIPEKPLSEDMTEVQKWKWSVRKAKKINQERHSQRCDTELKLSVARRMKDEEGFYY 586
R+DV +P+KP+++D +++KWKW + +K N+ER+SQRCD ELKL+VAR+MKDEEGFYY
Sbjct: 530 RDDVPLPDKPVTDDEEKIKKWKWKCKSLQKENRERYSQRCDIELKLAVARKMKDEEGFYY 589
Query: 587 PHNLDFRGRAYPMHPHLNHLSSDVCRGVLEFAEGRPLGKSGLRWLKIHLANLFSGGVEKL 646
PHNLDFRGRAYPMHPHLNHL SD+CRG+LEFAEGR LGKSGL+WLKIHLANL++GGV+KL
Sbjct: 590 PHNLDFRGRAYPMHPHLNHLGSDLCRGILEFAEGRFLGKSGLQWLKIHLANLYAGGVDKL 649
Query: 647 SHDGRLAFVENHLYEIFDSAENPINGSRWWLTAEDPFQCLAACINLSEALKSSSPHSVIS 706
SH+GRL F ENH +IFDSA+ P+ G RWWL AEDP QCLA CI L+EAL+SSSP + IS
Sbjct: 650 SHEGRLVFTENHFEDIFDSADKPLQGRRWWLKAEDPLQCLAVCITLTEALRSSSPETFIS 709
Query: 707 HLPIHQDGSCNGLQHYAALGRNTLEAAAVNLVAGEKPADVYSEIAVRVHEIMKRDSNKDP 766
H+P+HQDGSCNGLQHYAALGR+ L AAAVNLVAGEKPADVYS IA RV IM+RD+ KDP
Sbjct: 710 HIPVHQDGSCNGLQHYAALGRDKLGAAAVNLVAGEKPADVYSGIAARVSNIMQRDAQKDP 769
Query: 767 SKHPQALLAKILIDQVDRKLVKQTVMTSVYGVTFVGAREQIKRRLEEKGHITDDRQLFAA 826
+ P AL A+ L++QVDRKLVKQTVMTSVYGVT++GAREQIKRRL+E+ I+DD +LF A
Sbjct: 770 AIFPDALHARTLVNQVDRKLVKQTVMTSVYGVTYIGAREQIKRRLKERNAISDDTELFGA 829
Query: 827 ACYAAKVTLTALGEIFEAARSIMGWLGDCAKVIASENQPVRWTTPLGLPVVQPYCKNERH 886
+CYAAKVTLTAL E+F+ AR IM WLGDCAKVIASENQPVRWTTPLGLPVVQPY K +H
Sbjct: 830 SCYAAKVTLTALEEMFQGARGIMNWLGDCAKVIASENQPVRWTTPLGLPVVQPYRKLGKH 889
Query: 887 LIRTSLQVLALQREGNLVKIRKQRTAFPPNFVHSLDGSHMMMTAVACRDAGLHFAGL 943
+I+TSLQ+L LQRE + V + +QRTAFPPNFVHSLDGSHMMMTAVAC+ GL+FAG+
Sbjct: 890 IIKTSLQMLTLQRETDKVMVTRQRTAFPPNFVHSLDGSHMMMTAVACKKEGLNFAGV 946
>gi|222636003|gb|EEE66135.1| hypothetical protein OsJ_22187 [Oryza sativa Japonica Group]
Length = 946
Score = 1041 bits (2693), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 485/793 (61%), Positives = 633/793 (79%), Gaps = 32/793 (4%)
Query: 178 LRRRQVKQETEAWERMVDEYKELEAKMIEKRLAPNLPHIKGLFLGWFGPLSEAIEREQKM 237
LR+RQVK ETEAW R DEY+ELE +M+++RLAP LP++K LFLGWF PL +AI R+Q++
Sbjct: 90 LRQRQVKAETEAWARAADEYRELEREMLDRRLAPALPYVKSLFLGWFEPLRDAIARDQEV 149
Query: 238 QRTKKQKAAYAPHIELLPADKVAVIVMHKMMGLVMAGHED-RCVQVVQAAVHIGMAIEQE 296
QR K+ K YA ++ LLPADKVAVIVMHKMMGL+M+ + V+VVQAA IG A+E+E
Sbjct: 150 QRRKRVKHVYAKYLLLLPADKVAVIVMHKMMGLLMSSKDGVASVRVVQAAHCIGEAVERE 209
Query: 297 -------------------------IRIHSFLEKTKNYKRKKIIADTEEVLSKEKELLRK 331
++ +F +KT RKK + + L KE+ RK
Sbjct: 210 NRLNNVEALDSLALYTTDRCVRSWNFKVQTFFQKT----RKKSAGENDLALEKEQAKCRK 265
Query: 332 RVNSLIKSKRVMEAQKLLKNE-ETKPWGRDTQAKLGSRLVELLIETAYVQHPVNPADYSP 390
RV SL++ +++ EAQK+++ E E + WG ++Q KLG+RL+ELL+++A+VQ P + S
Sbjct: 266 RVKSLVRRRKLTEAQKIVQQEIELEEWGTESQVKLGTRLIELLLDSAFVQSPADQTPESS 325
Query: 391 PDVRPAFRHRFKTILKHPGQKTTKRYGVVECDPLVLEGLDRSAKHMLIPYVPMLVPPKKW 450
PD+RPAF+H + + G + K++ V+ECDPLV EG + +A+H+ IPY+PMLV PKKW
Sbjct: 326 PDIRPAFKHVLRQPIVENG-RLKKKHWVIECDPLVHEGFESTARHVEIPYLPMLVTPKKW 384
Query: 451 KGYNKGGYLFLPSYVMRTHGSRKQQEALKSVTGNCMKKVFEALDTLGSTKWRVNKQVLSV 510
KGY+ GGYLFLPSY+MRTHG + Q+EA+KSV ++KVFEALDTLGSTKWRVN++V +
Sbjct: 385 KGYDTGGYLFLPSYIMRTHGVKDQKEAIKSVPRKQLRKVFEALDTLGSTKWRVNRRVHNA 444
Query: 511 LESIWVSGGNIAGLVDRNDVLIPEKPLSEDMTEVQKWKWSVRKAKKINQERHSQRCDTEL 570
+E+IW GG IAGLVD+ ++ +PE+P +ED E+QKWKWS++KAKK N+E H++RCDTEL
Sbjct: 445 VETIWSRGGGIAGLVDKENIPLPERPETEDPDEIQKWKWSLKKAKKANRELHAERCDTEL 504
Query: 571 KLSVARRMKDEEGFYYPHNLDFRGRAYPMHPHLNHLSSDVCRGVLEFAEGRPLGKSGLRW 630
KLSVAR+M++E+GFYYPHNLDFRGRAYPMH HL+HL SD+CRGVLE+AEGRPLGKSGLRW
Sbjct: 505 KLSVARKMREEDGFYYPHNLDFRGRAYPMHAHLSHLGSDLCRGVLEYAEGRPLGKSGLRW 564
Query: 631 LKIHLANLFSGGVEKLSHDGRLAFVENHLYEIFDSAENPINGSRWWLTAEDPFQCLAACI 690
LKIHLAN + GG+EKLSH+ ++AFVEN L +IFDSA NP++G+ WW+ AEDPFQCLAAC+
Sbjct: 565 LKIHLANKYGGGIEKLSHEDKVAFVENQLPDIFDSATNPVDGNCWWMNAEDPFQCLAACM 624
Query: 691 NLSEALKSSSPHSVISHLPIHQDGSCNGLQHYAALGRNTLEAAAVNLVAGEKPADVYSEI 750
+LS+ALKSSSP +SHLPIHQDGSCNGLQHYAALGR+ + AAAVNLV G+KPAD+YSEI
Sbjct: 625 DLSDALKSSSPQCAVSHLPIHQDGSCNGLQHYAALGRDYMGAAAVNLVPGDKPADIYSEI 684
Query: 751 AVRVHEIMKRDSNKDPSKHPQALLAKILIDQVDRKLVKQTVMTSVYGVTFVGAREQIKRR 810
A RV ++++ DS +DP+ +P A LA++L+DQVDRKLVKQTVMTSVYGVT++GAR+QI +R
Sbjct: 685 AARVLDVVREDSMEDPATNPTASLARVLVDQVDRKLVKQTVMTSVYGVTYIGARQQITKR 744
Query: 811 LEEKGHITDDRQLFAAACYAAKVTLTALGEIFEAARSIMGWLGDCAKVIASENQPVRWTT 870
L+EKG ITDD+ L+ +CYA +VTL ALG++F++AR IM WLGDCAK+IASEN PV+WT+
Sbjct: 745 LQEKGLITDDKLLYEVSCYATRVTLDALGQMFQSARGIMAWLGDCAKMIASENHPVKWTS 804
Query: 871 PLGLPVVQPYCKNERHLIRTSLQVLALQREGNLVKIRKQRTAFPPNFVHSLDGSHMMMTA 930
P+GLPVVQPY K + ++IRTSLQ LAL+REG+ + +++Q+ AFPPNFVHSLD SHMMMTA
Sbjct: 805 PVGLPVVQPYKKYKNYMIRTSLQCLALRREGDAIALQRQKAAFPPNFVHSLDSSHMMMTA 864
Query: 931 VACRDAGLHFAGL 943
+AC+ AGLHFAG+
Sbjct: 865 IACKKAGLHFAGV 877
>gi|449482235|ref|XP_004156222.1| PREDICTED: LOW QUALITY PROTEIN: DNA-directed RNA polymerase 2,
chloroplastic/mitochondrial-like [Cucumis sativus]
Length = 958
Score = 1041 bits (2693), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 499/785 (63%), Positives = 623/785 (79%), Gaps = 5/785 (0%)
Query: 163 KLQEYREMKKRKFNLLRRRQVKQETEAWERMVDEYKELEAKMIEKRLAPNLPHIKGLFLG 222
+L+ + M + K+N+LRRRQV E EAWE EY+EL M +++LAPNLP++K LFLG
Sbjct: 132 RLKPVKGMGQWKYNMLRRRQVTIEAEAWENAAKEYRELLVDMCKQKLAPNLPYVKSLFLG 191
Query: 223 WFGPLSEAIEREQKM-QRTKKQKAAYAPHIELLPADKVAVIVMHKMMGLVMAGHEDRCVQ 281
WF P +AI +EQ++ Q K+ +A YAP+ LPADK++VI MHK+MGL+M G E V+
Sbjct: 192 WFEPFQDAIIKEQELIQEGKRSRAPYAPYFLQLPADKMSVITMHKLMGLLMRGSEHGSVR 251
Query: 282 VVQAAVHIGMAIEQEIRIHSFLEKTKNYKRKKIIADTEEVLS--KEKELLRKRVNSLIKS 339
VVQAA IG AIEQE+RIH FLEK K K + ++ S KE+E LRK+ + L
Sbjct: 252 VVQAACAIGDAIEQEVRIHKFLEKKKERTHNKDNENNDQPDSERKEQERLRKKXDQLDXK 311
Query: 340 KRVMEAQKLLKN-EETKPWGRDTQAKLGSRLVELLIETAYVQHPVNPADYSPPDVRPAFR 398
K+ + A ++ K ++++PWGR+ +AK+G+RL+ELLI+TAY+Q P + PPD RPAF
Sbjct: 312 KKHLAAGQIAKRADDSRPWGRELKAKVGARLIELLIQTAYIQPPADQLADGPPDPRPAFV 371
Query: 399 HRFKTILKHPGQKTTKRYGVVECDPLVLEGLDRSAKHMLIPYVPMLVPPKKWKGYNKGGY 458
H KT +K G R GV+ECDPLV++GLD +A+ ++IPY+PML+PP KW+GY+KGG+
Sbjct: 372 HSLKTSVKD-GTNFMGRLGVIECDPLVVKGLDWTARQIVIPYMPMLMPPVKWRGYDKGGH 430
Query: 459 LFLPSYVMRTHGSRKQQEALKSVTGNCMKKVFEALDTLGSTKWRVNKQVLSVLESIWVSG 518
+ LPS+ MRTHG+++Q++A K + VFEALDTLG+TKWR+NK++L+V+E IW SG
Sbjct: 431 ILLPSFAMRTHGAKQQRDAFKRTPKQQLTPVFEALDTLGNTKWRINKRILNVVERIWTSG 490
Query: 519 GNIAGLVDRNDVLIPEKPLSEDMTEVQKWKWSVRKAKKINQERHSQRCDTELKLSVARRM 578
G++AGLVD++DV +PEKP +ED T ++KWKW VR KK N ERHSQRCD ELKL+VAR+M
Sbjct: 491 GHLAGLVDQDDVPLPEKPDTEDETLIKKWKWEVRSVKKENMERHSQRCDIELKLTVARKM 550
Query: 579 KDEEGFYYPHNLDFRGRAYPMHPHLNHLSSDVCRGVLEFAEGRPLGKSGLRWLKIHLANL 638
KDEEGFYYPHN+DFRGRAYPMHPHLNHL SD+CRG+LEFAEGR L KSGL WLKIHLANL
Sbjct: 551 KDEEGFYYPHNVDFRGRAYPMHPHLNHLGSDLCRGILEFAEGRSLRKSGLIWLKIHLANL 610
Query: 639 FSGGVEKLSHDGRLAFVENHLYEIFDSAENPINGSRWWLTAEDPFQCLAACINLSEALKS 698
F+GGV+KLSHDGR+ F+ENHL +IFDSA+ P+ G RWW+ AEDPFQ LA C+NL+EAL+S
Sbjct: 611 FAGGVDKLSHDGRMTFIENHLEDIFDSADRPLEGGRWWMNAEDPFQFLAGCMNLTEALRS 670
Query: 699 SSPHSVISHLPIHQDGSCNGLQHYAALGRNTLEAAAVNLVAGEKPADVYSEIAVRVHEIM 758
SSP + ISH+PIHQDGSCNGLQHYAALGR+ AAAVNLVAGEKPADVYS IA RV EI+
Sbjct: 671 SSPETYISHIPIHQDGSCNGLQHYAALGRDKSGAAAVNLVAGEKPADVYSGIAARVLEIL 730
Query: 759 KRDSNKDPSKHPQALLAKILIDQVDRKLVKQTVMTSVYGVTFVGAREQIKRRLEEKGHIT 818
KRD+ KDP P AL AKILIDQVDRKLVKQTVMTSVYGVT++GAR+QIKRRL+E+ I+
Sbjct: 731 KRDAQKDPETFPDALHAKILIDQVDRKLVKQTVMTSVYGVTYIGARDQIKRRLKERAAIS 790
Query: 819 DDRQLFAAACYAAKVTLTALGEIFEAARSIMGWLGDCAKVIASENQPVRWTTPLGLPVVQ 878
DD +LF +CYAAK+TL ALGE+F AAR IM WL DCAK+IAS+N+ VRWTTPLGLPVVQ
Sbjct: 791 DDSELFGCSCYAAKITLEALGEMFVAAREIMNWLSDCAKIIASKNETVRWTTPLGLPVVQ 850
Query: 879 PYCKNERHLIRTSLQVLALQREGNLVKIRKQRTAFPPNFVHSLDGSHMMMTAVACRDAGL 938
PY K H I+TSLQVL L+RE + + +QRTAFPPNFVHSLD SHMMMTAVAC+ AGL
Sbjct: 851 PYRKLGIHAIKTSLQVLTLRRETDKILSSRQRTAFPPNFVHSLDSSHMMMTAVACKRAGL 910
Query: 939 HFAGL 943
+FAG+
Sbjct: 911 NFAGV 915
>gi|125556302|gb|EAZ01908.1| hypothetical protein OsI_23934 [Oryza sativa Indica Group]
Length = 950
Score = 1041 bits (2693), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 486/800 (60%), Positives = 636/800 (79%), Gaps = 32/800 (4%)
Query: 171 KKRKFNLLRRRQVKQETEAWERMVDEYKELEAKMIEKRLAPNLPHIKGLFLGWFGPLSEA 230
+K + LR+RQVK ETEAW R DEY+ELE +M+++RLAP LP++K LFLGWF PL +A
Sbjct: 87 RKAEHRRLRQRQVKAETEAWARAADEYRELEREMLDRRLAPALPYVKSLFLGWFEPLRDA 146
Query: 231 IEREQKMQRTKKQKAAYAPHIELLPADKVAVIVMHKMMGLVMAGHED-RCVQVVQAAVHI 289
I R+Q++QR K+ K YA ++ LLPADKVAVIVMHKMMGL+M+ + V+VVQAA I
Sbjct: 147 IARDQEVQRRKRVKHVYAKYLLLLPADKVAVIVMHKMMGLLMSSKDGVASVRVVQAAHCI 206
Query: 290 GMAIEQE-------------------------IRIHSFLEKTKNYKRKKIIADTEEVLSK 324
G A+E+E ++ +F +KT RKK + + L K
Sbjct: 207 GEAVERENRLNNVEALDSLALYTTDRCVRSWNFKVQTFFQKT----RKKSAGENDLALEK 262
Query: 325 EKELLRKRVNSLIKSKRVMEAQKLLKNE-ETKPWGRDTQAKLGSRLVELLIETAYVQHPV 383
E+ RKRV SL++ +++ EAQK+++ E E + WG ++Q KLG+RL+ELL+++A+VQ P
Sbjct: 263 EQAKCRKRVKSLVRRRKLTEAQKIVQQEIELEEWGTESQVKLGTRLIELLLDSAFVQSPA 322
Query: 384 NPADYSPPDVRPAFRHRFKTILKHPGQKTTKRYGVVECDPLVLEGLDRSAKHMLIPYVPM 443
+ S PD+RPAF+H + + G + K++ V+ECDPLV EG + +A+H+ IPY+PM
Sbjct: 323 DQTPESSPDIRPAFKHVLRQPIVENG-RLKKKHWVIECDPLVHEGFESTARHVEIPYLPM 381
Query: 444 LVPPKKWKGYNKGGYLFLPSYVMRTHGSRKQQEALKSVTGNCMKKVFEALDTLGSTKWRV 503
LV PKKWKGY+ GGYLFLPSY+MRTHG + Q+EA+KSV ++KVFEALDTLGSTKWRV
Sbjct: 382 LVTPKKWKGYDTGGYLFLPSYIMRTHGVKDQKEAIKSVPRKQLRKVFEALDTLGSTKWRV 441
Query: 504 NKQVLSVLESIWVSGGNIAGLVDRNDVLIPEKPLSEDMTEVQKWKWSVRKAKKINQERHS 563
N++V + +E+IW GG IAGLVD+ ++ +PE+P +ED E+QKWKWS++KAKK N+E H+
Sbjct: 442 NRRVHNAVETIWSRGGGIAGLVDKENIPLPERPETEDPDEIQKWKWSLKKAKKANRELHA 501
Query: 564 QRCDTELKLSVARRMKDEEGFYYPHNLDFRGRAYPMHPHLNHLSSDVCRGVLEFAEGRPL 623
+RCDTELKLSVAR+M++E+GFYYPHNLDFRGRAYPMH HL+HL SD+CRGVLE+AEGRPL
Sbjct: 502 ERCDTELKLSVARKMREEDGFYYPHNLDFRGRAYPMHAHLSHLGSDLCRGVLEYAEGRPL 561
Query: 624 GKSGLRWLKIHLANLFSGGVEKLSHDGRLAFVENHLYEIFDSAENPINGSRWWLTAEDPF 683
GKSGLRWLKIHLAN + GG+EKLSH+ ++AFVEN L +IFDSA NP++G+ WW+ AEDPF
Sbjct: 562 GKSGLRWLKIHLANKYGGGIEKLSHEDKVAFVENQLPDIFDSATNPVDGNCWWMNAEDPF 621
Query: 684 QCLAACINLSEALKSSSPHSVISHLPIHQDGSCNGLQHYAALGRNTLEAAAVNLVAGEKP 743
QCLAAC++LS+ALKSSSP +SHLPIHQDGSCNGLQHYAALGR+ + AAAVNLV G+KP
Sbjct: 622 QCLAACMDLSDALKSSSPQCAVSHLPIHQDGSCNGLQHYAALGRDYMGAAAVNLVPGDKP 681
Query: 744 ADVYSEIAVRVHEIMKRDSNKDPSKHPQALLAKILIDQVDRKLVKQTVMTSVYGVTFVGA 803
AD+YSEIA RV ++++ DS +DP+ +P A LA++L+DQVDRKLVKQTVMTSVYGVT++GA
Sbjct: 682 ADIYSEIAARVLDVVREDSMEDPATNPTASLARVLVDQVDRKLVKQTVMTSVYGVTYIGA 741
Query: 804 REQIKRRLEEKGHITDDRQLFAAACYAAKVTLTALGEIFEAARSIMGWLGDCAKVIASEN 863
R+QI +RL+EKG ITDD+ L+ +CYA +VTL ALG++F++AR IM WLGDCAK+IASEN
Sbjct: 742 RQQITKRLQEKGLITDDKLLYEVSCYATRVTLDALGQMFQSARGIMAWLGDCAKMIASEN 801
Query: 864 QPVRWTTPLGLPVVQPYCKNERHLIRTSLQVLALQREGNLVKIRKQRTAFPPNFVHSLDG 923
PV+WT+P+GLPVVQPY K + ++IRTSLQ LAL+REG+ + +++Q+ AFPPNFVHSLD
Sbjct: 802 YPVKWTSPVGLPVVQPYKKYKNYMIRTSLQCLALRREGDAIALQRQKAAFPPNFVHSLDS 861
Query: 924 SHMMMTAVACRDAGLHFAGL 943
SHMMMTA+AC+ AGLHFAG+
Sbjct: 862 SHMMMTAIACKKAGLHFAGV 881
>gi|224119272|ref|XP_002331270.1| predicted protein [Populus trichocarpa]
gi|222873695|gb|EEF10826.1| predicted protein [Populus trichocarpa]
Length = 847
Score = 1041 bits (2692), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 500/780 (64%), Positives = 633/780 (81%), Gaps = 8/780 (1%)
Query: 170 MKKRKFNLLRRRQVKQETEAWERMVDEYKELEAKMIEKRLAPNLPHIKGLFLGWFGPLSE 229
M K+ LRRRQVK E EAWE+ EYKEL M E +LAPNLP++KGLFLGWF PL +
Sbjct: 1 MGSGKYKALRRRQVKIEAEAWEQAAKEYKELLKDMCEHKLAPNLPYMKGLFLGWFEPLRD 60
Query: 230 AIEREQKMQRTKKQKAAYAPHIELLPADKVAVIVMHKMMGLVMAGHEDRCVQVVQAAVHI 289
AI +EQ+ R K + Y+P+ +LLPAD ++VI MHK+ +VM G E C +VV AA I
Sbjct: 61 AIAKEQESIRRGKTRPDYSPYFDLLPADMMSVITMHKLTAMVMIGGEHGCARVVAAACMI 120
Query: 290 GMAIEQEIRIHSFLEKTKNYKR-----KKIIADTEEVLSKEKELLRKRVNSLIKSKRVME 344
G AIEQEIRIH+FLEKT+ K K + + E+E LRK+V LIK +++
Sbjct: 121 GDAIEQEIRIHNFLEKTRKKKENADNSKNSVEGESPAVMNEEEKLRKKVTDLIKKQKLPA 180
Query: 345 AQKLLK-NEETKPWGRDTQAKLGSRLVELLIETAYVQHPVNPADYSPPDVRPAFRHRFKT 403
+K++K ++++K W D +AK+GSRL+ELL++TAY+Q P + SPPD+RPAF H F+T
Sbjct: 181 VRKIVKGHDDSKSWSTDAKAKVGSRLIELLLQTAYIQPPPDQLADSPPDLRPAFVHTFRT 240
Query: 404 ILKHPGQKTTKRYGVVECDPLVLEGLDRSAKHMLIPYVPMLVPPKKWKGYNKGGYLFLPS 463
+ + +KT+++YGV++CD LVL+GL+++ +H++IPY+PMLVPP +W+GY+KG +LFLPS
Sbjct: 241 V-SYENKKTSRKYGVIQCDSLVLKGLEQTDRHIVIPYMPMLVPPLRWRGYDKGAHLFLPS 299
Query: 464 YVMRTHGSRKQQEALKSVTGNCMKKVFEALDTLGSTKWRVNKQVLSVLESIWVSGGNIAG 523
YVMR HG+++Q+EA+K ++ VFEALDTLG+TKWRVNK+VLSV++ IW +GG +A
Sbjct: 300 YVMRIHGAKQQREAVKRTPKKQLQLVFEALDTLGNTKWRVNKRVLSVVDRIWNNGGRLAD 359
Query: 524 LVDRNDVLIPEKPLSEDMTEVQKWKWSVRKAKKINQERHSQRCDTELKLSVARRMKDEEG 583
LVDR+DV +PEKP +ED ++KWKW V+ KK N+ERHS+RCDTELK++VAR+MK+EEG
Sbjct: 360 LVDRSDVPLPEKPETEDEALLKKWKWKVKSVKKENRERHSRRCDTELKIAVARKMKNEEG 419
Query: 584 FYYPHNLDFRGRAYPMHPHLNHLSSDVCRGVLEFAEGRPLGKSGLRWLKIHLANLFSGGV 643
FYYPHNLDFRGRAYPMHP+LNHL SD+CRG+LEFAEGRPLGKSGLRWLKIHLANLF+ GV
Sbjct: 420 FYYPHNLDFRGRAYPMHPYLNHLGSDLCRGILEFAEGRPLGKSGLRWLKIHLANLFACGV 479
Query: 644 EKLSHDGRLAFVENHLYEIFDSAENPINGSRWWLTAEDPFQCLAACINLSEALKSSSPHS 703
+KLSH+GR+AF ENHL +IFDSA+ P+ G RWWL AEDPFQCLA CINL+EAL+SSSP +
Sbjct: 480 DKLSHEGRIAFTENHLDDIFDSADKPLEGKRWWLHAEDPFQCLAVCINLTEALRSSSPET 539
Query: 704 VISHLPIHQDGSCNGLQHYAALGRNTLEAAAVNLVAGEKPADVYSEIAVRVHEIMKRDSN 763
+SH+PIHQDGSCNGLQHYAALGR+ L AAAVNLVAGEKP DVYS IA RV +IM+ D+
Sbjct: 540 CLSHIPIHQDGSCNGLQHYAALGRDKLGAAAVNLVAGEKPTDVYSGIAARVLDIMRSDAQ 599
Query: 764 KDPSKHPQALLAKILIDQVDRKLVKQTVMTSVYGVTFVGAREQIKRRLEEKGHITDDRQL 823
+DP P AL A+ LI QVDRKLVKQTVMTSVYGVT++GAR+QI+RRL+E+G +TD+ ++
Sbjct: 600 EDPEVFPDALRARRLISQVDRKLVKQTVMTSVYGVTYIGARDQIERRLKERG-LTDNSEI 658
Query: 824 FAAACYAAKVTLTALGEIFEAARSIMGWLGDCAKVIASENQPVRWTTPLGLPVVQPYCKN 883
F +CYAAKVTLTALGE+FEAARSIM WLG+CAK+IASEN+PVRWTTPLGLPVVQPY K
Sbjct: 659 FGCSCYAAKVTLTALGEMFEAARSIMNWLGECAKIIASENEPVRWTTPLGLPVVQPYRKL 718
Query: 884 ERHLIRTSLQVLALQREGNLVKIRKQRTAFPPNFVHSLDGSHMMMTAVACRDAGLHFAGL 943
+H+I+TSLQ L LQ+E + V +++QRTAFPPNFVHSLDGSHMMMTAVAC+ AGL FAG+
Sbjct: 719 GKHVIKTSLQFLTLQKETDKVMVKRQRTAFPPNFVHSLDGSHMMMTAVACKRAGLKFAGV 778
>gi|356567146|ref|XP_003551782.1| PREDICTED: DNA-directed RNA polymerase 2B,
chloroplastic/mitochondrial-like [Glycine max]
Length = 992
Score = 1040 bits (2689), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 501/782 (64%), Positives = 623/782 (79%), Gaps = 18/782 (2%)
Query: 174 KFNLLRRRQVKQETEAWERMVDEYKELEAKMIEKRLAPNLPHIKGLFLGWFGPLSEAIER 233
++ LRRRQVK ETE WE EY+EL M E +LAPNLP++K LFLGWF PL +AI +
Sbjct: 148 RYQELRRRQVKIETEMWEEAAKEYRELLMDMCEHKLAPNLPYMKSLFLGWFEPLRDAIVK 207
Query: 234 EQKMQRTKKQKAAYAPHIELLPADKVAVIVMHKMMGLVMAGHEDRCV---QVVQAAVHIG 290
EQ+M K + AYAP+ LPADK+AVI MHK+MGL+M G+E + +VVQAA IG
Sbjct: 208 EQEMYSEGKNRMAYAPYFVQLPADKMAVIAMHKLMGLLMTGNERVTIGTARVVQAACGIG 267
Query: 291 MAIEQEIRIHSFLE--------KTKNYKRKKIIADTEEVLSKEKELLRKRVNSLIKSKRV 342
AIE E+RIH FLE ++ K + +AD KE++ LRK+V L+K +++
Sbjct: 268 DAIENEVRIHKFLEKTKKKKGDRSNKNKAGESVADI-----KEEQKLRKKVIDLMKKQKL 322
Query: 343 MEAQKLLKN-EETKPWGRDTQAKLGSRLVELLIETAYVQHPVNPADYSPPDVRPAFRHRF 401
+ + L+K ++TKPWG + K+GSRL+ELL++TAY+Q P + + PD+RPAF H F
Sbjct: 323 VAVRGLVKGKDDTKPWGAVIKTKVGSRLIELLLQTAYIQPPSDQLPDAAPDIRPAFVHSF 382
Query: 402 KTILKHPGQKTTKRYGVVECDPLVLEGLDRSAKHMLIPYVPMLVPPKKWKGYNKGGYLFL 461
KT+ K K ++RYG+++CDPL+L+GL+R+AK+M+IPY+PMLVPP W GY+KGG+LFL
Sbjct: 383 KTVTKE-SIKASRRYGIIQCDPLILKGLERTAKNMVIPYMPMLVPPVNWTGYDKGGHLFL 441
Query: 462 PSYVMRTHGSRKQQEALKSVTGNCMKKVFEALDTLGSTKWRVNKQVLSVLESIWVSGGNI 521
PSYVMRTHG R+Q+EA+K ++ VFEALDTLG TKWRVNK+VLSV++ IW SGG I
Sbjct: 442 PSYVMRTHGVRQQREAVKRAPRKQLEPVFEALDTLGHTKWRVNKKVLSVVDRIWASGGRI 501
Query: 522 AGLVDRNDVLIPEKPLSEDMTEVQKWKWSVRKAKKINQERHSQRCDTELKLSVARRMKDE 581
A LVDR+DV +P++P ++D +++KWKW + +K N+ER+SQRCD ELKL+VAR+MKDE
Sbjct: 502 ADLVDRDDVPLPDEPDTDDEAKIKKWKWKYKSLQKENRERYSQRCDIELKLAVARKMKDE 561
Query: 582 EGFYYPHNLDFRGRAYPMHPHLNHLSSDVCRGVLEFAEGRPLGKSGLRWLKIHLANLFSG 641
EGFYYPHNLDFRGRAYPMHPHLNHL SD+CRG+LEFAEGR LGKSGLRWLKIHLANL++G
Sbjct: 562 EGFYYPHNLDFRGRAYPMHPHLNHLGSDLCRGILEFAEGRSLGKSGLRWLKIHLANLYAG 621
Query: 642 GVEKLSHDGRLAFVENHLYEIFDSAENPINGSRWWLTAEDPFQCLAACINLSEALKSSSP 701
GV+KLS++GRLAF ENH +IFDSA+ P+ G RWWL AEDP QCLA CI L+EAL+SSSP
Sbjct: 622 GVDKLSYEGRLAFTENHFEDIFDSADKPLEGRRWWLKAEDPLQCLAVCITLTEALRSSSP 681
Query: 702 HSVISHLPIHQDGSCNGLQHYAALGRNTLEAAAVNLVAGEKPADVYSEIAVRVHEIMKRD 761
+ ISH+P+HQDGSCNGLQHYAALGR+ L AAAVNLV GEKPADVYS IA RV IM+RD
Sbjct: 682 ETFISHIPVHQDGSCNGLQHYAALGRDKLGAAAVNLVTGEKPADVYSGIAARVSNIMQRD 741
Query: 762 SNKDPSKHPQALLAKILIDQVDRKLVKQTVMTSVYGVTFVGAREQIKRRLEEKGHITDDR 821
+ KDP+ AL A+ L++QVDRKLVKQTVMTSVYGVT++GAREQIKRRL+E+ I+DD+
Sbjct: 742 AQKDPAVFRDALHARTLVNQVDRKLVKQTVMTSVYGVTYIGAREQIKRRLKERNAISDDK 801
Query: 822 QLFAAACYAAKVTLTALGEIFEAARSIMGWLGDCAKVIASENQPVRWTTPLGLPVVQPYC 881
+LF A+CYAAKVTLTAL E+F+ AR IM WLGDCAKVIASENQPVRWTTPLGLPVVQPY
Sbjct: 802 ELFGASCYAAKVTLTALEEMFQGARGIMSWLGDCAKVIASENQPVRWTTPLGLPVVQPYR 861
Query: 882 KNERHLIRTSLQVLALQREGNLVKIRKQRTAFPPNFVHSLDGSHMMMTAVACRDAGLHFA 941
K +H+I+TSLQ+L LQRE + V + +QRTAFPPNFVHSLDGSHMMMTAVAC+ GL FA
Sbjct: 862 KLGKHIIKTSLQILTLQRETDKVMVTRQRTAFPPNFVHSLDGSHMMMTAVACKKEGLSFA 921
Query: 942 GL 943
G+
Sbjct: 922 GV 923
>gi|62750823|emb|CAC80138.1| DNA-dependent RNA polymerase [Spinacia oleracea]
Length = 1036
Score = 1038 bits (2684), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 476/774 (61%), Positives = 624/774 (80%), Gaps = 5/774 (0%)
Query: 174 KFNLLRRRQVKQETEAWERMVDEYKELEAKMIEKRLAPNLPHIKGLFLGWFGPLSEAIER 233
K+ LR RQ+K ETE+W++ +EYKEL A M + +LAPNLP++K LFLGWF P ++I
Sbjct: 195 KYQKLRNRQIKLETESWQQAANEYKELLADMCKLKLAPNLPYVKSLFLGWFEPFRDSIIE 254
Query: 234 EQKMQRTKKQKAAYAPHIELLPADKVAVIVMHKMMGLVMAGHEDRCVQVVQAAVHIGMAI 293
+Q++ R K + AY + + LPAD +A+I MHK+MG++M G V+VVQAA +G AI
Sbjct: 255 DQELIRQGKCRGAYGTYFDQLPADMMAIITMHKLMGMLMTGSGHGSVKVVQAACALGEAI 314
Query: 294 EQEIRIHSFLEKTKNYKRKKIIADTEEVLS---KEKELLRKRVNSLIKSKRVMEAQKLLK 350
EQE+RIH+FLEK K K + + +E++ LRK VN+LIK ++ +A K++
Sbjct: 315 EQEVRIHTFLEKAKKKKGDRSKKPDDAASDAEIQEQQHLRKNVNNLIKKQKRRQALKIVD 374
Query: 351 NE-ETKPWGRDTQAKLGSRLVELLIETAYVQHPVNPADYSPPDVRPAFRHRFKTILKHPG 409
++ + KPWG +T+AK+GSRL+ELLI+TAY+Q P + + PPD+RPAF H K++
Sbjct: 375 SQGDLKPWGSETRAKVGSRLIELLIQTAYIQPPASQSACDPPDLRPAFVHSLKSVGPE-N 433
Query: 410 QKTTKRYGVVECDPLVLEGLDRSAKHMLIPYVPMLVPPKKWKGYNKGGYLFLPSYVMRTH 469
+KT +R+G++ECDPL+++GL+++ +H++IPY+PMLVPP+KW GY+KG YL L S+VMRTH
Sbjct: 434 KKTGRRFGMIECDPLIIKGLEKTPRHIVIPYMPMLVPPEKWTGYDKGAYLVLRSFVMRTH 493
Query: 470 GSRKQQEALKSVTGNCMKKVFEALDTLGSTKWRVNKQVLSVLESIWVSGGNIAGLVDRND 529
GS+ Q+ A++ + +K VFEALDTLG+TKWRVNK+VLS+++ +W +GG +A LVDR+D
Sbjct: 494 GSKHQRVAVRRASEEQLKSVFEALDTLGNTKWRVNKKVLSIVDRVWANGGRLADLVDRDD 553
Query: 530 VLIPEKPLSEDMTEVQKWKWSVRKAKKINQERHSQRCDTELKLSVARRMKDEEGFYYPHN 589
V +PEKP +ED +E+++WKW VR KK N+ERHSQRCD ELKL+VAR+MKDEEGF+YPHN
Sbjct: 554 VPLPEKPDTEDESELKRWKWKVRSLKKENRERHSQRCDVELKLAVARKMKDEEGFFYPHN 613
Query: 590 LDFRGRAYPMHPHLNHLSSDVCRGVLEFAEGRPLGKSGLRWLKIHLANLFSGGVEKLSHD 649
+DFRGRAYPMHP+LNHL SD+CRG+LEFAEGR +GKSGLRWLKIH+ANL++GG++KLS +
Sbjct: 614 VDFRGRAYPMHPYLNHLGSDMCRGILEFAEGRAVGKSGLRWLKIHVANLYAGGIDKLSLE 673
Query: 650 GRLAFVENHLYEIFDSAENPINGSRWWLTAEDPFQCLAACINLSEALKSSSPHSVISHLP 709
GR+AF ENHL +IFDS + P+ G WWL AEDPFQCLA CI L+EAL+S+ P + SH+P
Sbjct: 674 GRIAFTENHLDDIFDSVDKPLEGRCWWLKAEDPFQCLAVCIELAEALRSTRPEAFKSHIP 733
Query: 710 IHQDGSCNGLQHYAALGRNTLEAAAVNLVAGEKPADVYSEIAVRVHEIMKRDSNKDPSKH 769
+HQDGSCNGLQHYAALGR+ L A AVNLVAGEKPADVYS IA RV IM+ D+ KDP+
Sbjct: 734 VHQDGSCNGLQHYAALGRDELGATAVNLVAGEKPADVYSGIASRVLSIMEADAKKDPTDF 793
Query: 770 PQALLAKILIDQVDRKLVKQTVMTSVYGVTFVGAREQIKRRLEEKGHITDDRQLFAAACY 829
P +LA+ LI+QVDRKLVKQTVMTSVYGVT++GAREQIKRRL+E+ +DD +++ AACY
Sbjct: 794 PDTVLARKLINQVDRKLVKQTVMTSVYGVTYIGAREQIKRRLKERAAFSDDTEIYGAACY 853
Query: 830 AAKVTLTALGEIFEAARSIMGWLGDCAKVIASENQPVRWTTPLGLPVVQPYCKNERHLIR 889
A++TLTALGE+F+AARSIM WLGDCAK+IASENQPVRW TPLGLPVVQPYCK RHLI+
Sbjct: 854 VARITLTALGEMFQAARSIMSWLGDCAKIIASENQPVRWITPLGLPVVQPYCKKGRHLIK 913
Query: 890 TSLQVLALQREGNLVKIRKQRTAFPPNFVHSLDGSHMMMTAVACRDAGLHFAGL 943
TSLQ+L L++E + +R+Q++AFPPNFVHSLDGSHMMMTAVAC+ AGL+FAG+
Sbjct: 914 TSLQMLTLEKETEKIMVRRQKSAFPPNFVHSLDGSHMMMTAVACKHAGLNFAGV 967
>gi|3341648|emb|CAA06488.1| DNA directed RNA polymerase [Zea mays]
gi|413954906|gb|AFW87555.1| DNA-directed RNA polymerase isoform 1 [Zea mays]
gi|413954907|gb|AFW87556.1| DNA-directed RNA polymerase isoform 2 [Zea mays]
Length = 952
Score = 1038 bits (2683), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 480/763 (62%), Positives = 627/763 (82%), Gaps = 6/763 (0%)
Query: 183 VKQETEAWERMVDEYKELEAKMIEKRLAPNLPHIKGLFLGWFGPLSEAIEREQKMQRTKK 242
VK ETEAW R +EY+E+E +M+++RLAP LP++K LF+GWF PL +AI R+Q +QR K+
Sbjct: 125 VKAETEAWARAAEEYREIEREMLDRRLAPALPYVKALFVGWFEPLRDAIARDQDVQRRKR 184
Query: 243 QKAAYAPHIELLPADKVAVIVMHKMMGLVMAGHEDR-CVQVVQAAVHIGMAIEQEIRIHS 301
K YA ++ LLPADKVAVIVMHKMMGL+M+ + V+VVQAA IG A+E+E ++ S
Sbjct: 185 VKHVYAKYLLLLPADKVAVIVMHKMMGLLMSSKDGTGSVRVVQAAHCIGEAVEREFKVQS 244
Query: 302 FLEKTKNYKRKKIIADTEEVLSKEKELLRKRVNSLIKSKRVMEAQKLLKNE-ETKPWGRD 360
F +K++ +KKI + + L KE+ RKRV SL+K +++ EAQ+L++ E E + WG +
Sbjct: 245 FFQKSR---KKKIQGENDPALEKEQAKCRKRVKSLVKRRKMSEAQRLVQQELELEEWGTE 301
Query: 361 TQAKLGSRLVELLIETAYVQHPVNPADYSPPDVRPAFRHRFKTILKHPGQKTTKRYGVVE 420
Q KLGSRL+ELL+++A+VQ P + S PD+RPAF+H + + G + K++ V+E
Sbjct: 302 AQVKLGSRLIELLLDSAFVQPPADQTPDSSPDIRPAFKHVLRQPIIENG-RLKKKHWVIE 360
Query: 421 CDPLVLEGLDRSAKHMLIPYVPMLVPPKKWKGYNKGGYLFLPSYVMRTHGSRKQQEALKS 480
CD LV EG + +A+H+ IPY+PMLVPPKKWKGY+KGG+LFLPSY+MRTHG + Q++A+ S
Sbjct: 361 CDHLVHEGFESTARHVDIPYLPMLVPPKKWKGYDKGGHLFLPSYIMRTHGVKDQKDAINS 420
Query: 481 VTGNCMKKVFEALDTLGSTKWRVNKQVLSVLESIWVSGGNIAGLVDRNDVLIPEKPLSED 540
V ++KVFEALD LGSTKWRVN++V V+E+IW GG IAGLVD+ ++ +PE+P SED
Sbjct: 421 VPRKQLRKVFEALDILGSTKWRVNRRVHDVVETIWSQGGGIAGLVDKANIPLPERPESED 480
Query: 541 MTEVQKWKWSVRKAKKINQERHSQRCDTELKLSVARRMKDEEGFYYPHNLDFRGRAYPMH 600
E+QKWKWS++KAKK N+E H++RCDTELKLSVAR+M++E+GFYYPHNLDFRGRAYPMH
Sbjct: 481 PDEMQKWKWSLKKAKKTNRELHAERCDTELKLSVARKMREEDGFYYPHNLDFRGRAYPMH 540
Query: 601 PHLNHLSSDVCRGVLEFAEGRPLGKSGLRWLKIHLANLFSGGVEKLSHDGRLAFVENHLY 660
PHL+HL SD+CRGVLE+AEGRPLGKSGL WLKIHLAN + GG+EKLSH+G+LAFVEN L+
Sbjct: 541 PHLSHLGSDLCRGVLEYAEGRPLGKSGLCWLKIHLANKYGGGIEKLSHEGKLAFVENQLF 600
Query: 661 EIFDSAENPINGSRWWLTAEDPFQCLAACINLSEALKSSSPHSVISHLPIHQDGSCNGLQ 720
+IFDSA NP++G+ WW AEDPFQCLAAC++LS+AL+S SP+ +SHLPIHQDGSCNGLQ
Sbjct: 601 DIFDSAANPVDGNCWWTNAEDPFQCLAACMDLSDALRSPSPYHAVSHLPIHQDGSCNGLQ 660
Query: 721 HYAALGRNTLEAAAVNLVAGEKPADVYSEIAVRVHEIMKRDSNKDPSKHPQALLAKILID 780
HYAALGR+ + A AVNLV GEKPAD+YSEIA RV ++ DS KDP+ +P A LA++L+D
Sbjct: 661 HYAALGRDYMGAVAVNLVPGEKPADIYSEIASRVLNVVCEDSMKDPATNPTASLARVLVD 720
Query: 781 QVDRKLVKQTVMTSVYGVTFVGAREQIKRRLEEKGHITDDRQLFAAACYAAKVTLTALGE 840
QVDRKLVKQTVMTSVYGVT++GAR+QI +RL+EKG ITDD+ L+ +CYA +VTL ALG+
Sbjct: 721 QVDRKLVKQTVMTSVYGVTYIGARQQITKRLQEKGLITDDKLLYDVSCYATRVTLDALGQ 780
Query: 841 IFEAARSIMGWLGDCAKVIASENQPVRWTTPLGLPVVQPYCKNERHLIRTSLQVLALQRE 900
+F++AR IM WLGDCAK+IAS+NQPV+WT+P+GLPVVQPY K + ++IRTSLQ LAL+RE
Sbjct: 781 MFQSARGIMAWLGDCAKMIASKNQPVKWTSPVGLPVVQPYKKYKNYMIRTSLQCLALRRE 840
Query: 901 GNLVKIRKQRTAFPPNFVHSLDGSHMMMTAVACRDAGLHFAGL 943
G+ + I++Q+ AFPPNFVHSLD SHMMMTA+AC+++GLHFAG+
Sbjct: 841 GDAIAIQRQKAAFPPNFVHSLDSSHMMMTAIACKESGLHFAGV 883
>gi|449435282|ref|XP_004135424.1| PREDICTED: DNA-directed RNA polymerase 2,
chloroplastic/mitochondrial-like [Cucumis sativus]
Length = 968
Score = 1036 bits (2679), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 484/773 (62%), Positives = 616/773 (79%), Gaps = 12/773 (1%)
Query: 174 KFNLLRRRQVKQETEAWERMVDEYKELEAKMIEKRLAPNLPHIKGLFLGWFGPLSEAIER 233
K+++LR+RQ+K ETEAWE EY++L A + E++LAPNLP++K LFLGWF PL +AI
Sbjct: 143 KYDMLRKRQIKIETEAWEEAAKEYQDLIADICEQKLAPNLPYMKSLFLGWFQPLRDAIVA 202
Query: 234 EQKMQRTKKQKAAYAPHIELLPADKVAVIVMHKMMGLVMAGHEDR-CVQVVQAAVHIGMA 292
EQ+ + K+ ++A + LLPAD +AVI MHK+MGL+M+ E V+V QAA IG A
Sbjct: 203 EQESVKFKRSSPSHALYFHLLPADMMAVITMHKLMGLLMSDIEGGGSVRVTQAASGIGEA 262
Query: 293 IEQEIRIHSFLEKTKNYKRKKIIADTEEVLSKEKELLRKRVNSLIKSKRVMEAQKLLKN- 351
IE E+RI +F EKTK E L++ + LRK++ L+K +++ + ++KN
Sbjct: 263 IENEVRIRNFFEKTKK---------QPEQLAEGHDKLRKKLTKLMKQQKLQKVNFIVKNH 313
Query: 352 EETKPWGRDTQAKLGSRLVELLIETAYVQHPVNPADYSPPDVRPAFRHRFKTILKHPGQK 411
+++KPWG D K+G RL++LLIETAY+Q PV+ +PPD+RPAF H KT LK Q+
Sbjct: 314 DDSKPWGTDAHVKVGCRLIQLLIETAYIQPPVDQIGDAPPDLRPAFVHSLKTSLKE-SQR 372
Query: 412 TTKRYGVVECDPLVLEGLDRSAKHMLIPYVPMLVPPKKWKGYNKGGYLFLPSYVMRTHGS 471
KRYGV+ECDPLV G+ ++A HM+IPY+PMLVPP+KW GY++G + FLPSYVMR G+
Sbjct: 373 LGKRYGVIECDPLVYRGMVKTAGHMIIPYMPMLVPPRKWTGYDQGAHFFLPSYVMRIRGA 432
Query: 472 RKQQEALKSVTGNCMKKVFEALDTLGSTKWRVNKQVLSVLESIWVSGGNIAGLVDRNDVL 531
R+Q+EA+K + + VF+ALD LGSTKWRVNK+VLSV+E IW SGG +A LVDR D+
Sbjct: 433 RQQREAVKRASKKQLGPVFKALDILGSTKWRVNKRVLSVIEKIWASGGRLADLVDREDMP 492
Query: 532 IPEKPLSEDMTEVQKWKWSVRKAKKINQERHSQRCDTELKLSVARRMKDEEGFYYPHNLD 591
+PE+P+ ED E++ WKW V+ K+ N ERHSQRCDTELKL+VAR+MK+EEGFYYPHNLD
Sbjct: 493 LPEQPMVEDEAEIRNWKWKVKAVKRENSERHSQRCDTELKLAVARKMKEEEGFYYPHNLD 552
Query: 592 FRGRAYPMHPHLNHLSSDVCRGVLEFAEGRPLGKSGLRWLKIHLANLFSGGVEKLSHDGR 651
FRGRAYPMHPHLNH+ SD CRG LEFAEGRPLG+SGLRWLKIHLANL++GGV+KLS+ R
Sbjct: 553 FRGRAYPMHPHLNHIGSDFCRGTLEFAEGRPLGESGLRWLKIHLANLYAGGVDKLSYKDR 612
Query: 652 LAFVENHLYEIFDSAENPINGSRWWLTAEDPFQCLAACINLSEALKSSSPHSVISHLPIH 711
++F ENHL EIFDSA+ P+ GSRWWL AEDPFQCLA CI+LSEAL+S SP + ISH+P+H
Sbjct: 613 ISFTENHLDEIFDSADRPLEGSRWWLGAEDPFQCLAVCIDLSEALRSPSPETTISHMPVH 672
Query: 712 QDGSCNGLQHYAALGRNTLEAAAVNLVAGEKPADVYSEIAVRVHEIMKRDSNKDPSKHPQ 771
QDGSCNGLQHYAALGR+ L A AVNL AG+KPADVYS IA RV +IM+ D+ KDP+ +P
Sbjct: 673 QDGSCNGLQHYAALGRDKLGAEAVNLAAGDKPADVYSGIASRVLDIMRSDAAKDPASNPN 732
Query: 772 ALLAKILIDQVDRKLVKQTVMTSVYGVTFVGAREQIKRRLEEKGHITDDRQLFAAACYAA 831
AL A++LI+QVDRKLVKQTVMTSVYGVT+ GA++QI++RL+E+ I ++R LF A+CYAA
Sbjct: 733 ALHARLLINQVDRKLVKQTVMTSVYGVTYAGAKDQIRQRLKERSSIENERHLFTASCYAA 792
Query: 832 KVTLTALGEIFEAARSIMGWLGDCAKVIASENQPVRWTTPLGLPVVQPYCKNERHLIRTS 891
K TLTA+GE+FEAA+SIM WLG+CAKVIASENQ VRWTTPLGLPVVQPY K RHL++TS
Sbjct: 793 KTTLTAIGEMFEAAKSIMNWLGECAKVIASENQAVRWTTPLGLPVVQPYRKLGRHLVKTS 852
Query: 892 LQVLALQREGNLVKIRKQRTAFPPNFVHSLDGSHMMMTAVACRDAGLHFAGLS 944
LQ+L+LQRE + V +QRTAFPPN++HSLD SHMMMTA+AC+ AGL+FAG++
Sbjct: 853 LQMLSLQRETDKVMAMRQRTAFPPNYIHSLDSSHMMMTALACKRAGLNFAGVT 905
>gi|162457867|ref|NP_001104932.1| RNA polymerase2 [Zea mays]
gi|4559306|gb|AAD22977.1|AF127022_1 T7-like RNA polymerase [Zea mays]
Length = 952
Score = 1036 bits (2678), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 480/763 (62%), Positives = 626/763 (82%), Gaps = 6/763 (0%)
Query: 183 VKQETEAWERMVDEYKELEAKMIEKRLAPNLPHIKGLFLGWFGPLSEAIEREQKMQRTKK 242
VK ETEAW R +EY+E+E +M+++RLAP LP++K LF+GWF PL +AI R+Q +QR K+
Sbjct: 125 VKAETEAWARAAEEYREIEREMLDRRLAPALPYVKALFVGWFEPLRDAIARDQDVQRRKR 184
Query: 243 QKAAYAPHIELLPADKVAVIVMHKMMGLVMAGHEDR-CVQVVQAAVHIGMAIEQEIRIHS 301
K YA ++ LLPADKVAVIVMHKMMGL+M+ + V+VVQAA IG A+E+E ++ S
Sbjct: 185 VKHVYAKYLLLLPADKVAVIVMHKMMGLLMSSKDGTGSVRVVQAAHCIGEAVEREFKVQS 244
Query: 302 FLEKTKNYKRKKIIADTEEVLSKEKELLRKRVNSLIKSKRVMEAQKLLKNE-ETKPWGRD 360
F +K++ +KKI + + L KE+ RKRV SL+K +++ EAQ+L++ E E + WG +
Sbjct: 245 FFQKSR---KKKIQGENDPALEKEQAKCRKRVKSLVKRRKMSEAQRLVQQELELEEWGTE 301
Query: 361 TQAKLGSRLVELLIETAYVQHPVNPADYSPPDVRPAFRHRFKTILKHPGQKTTKRYGVVE 420
Q KLGSRL+ELL+++A+VQ P + S PD+RPAF+H + + G + K++ V+E
Sbjct: 302 AQVKLGSRLIELLLDSAFVQPPADQTPDSSPDIRPAFKHVLRQPIIENG-RLKKKHWVIE 360
Query: 421 CDPLVLEGLDRSAKHMLIPYVPMLVPPKKWKGYNKGGYLFLPSYVMRTHGSRKQQEALKS 480
CD LV EG + +A+H+ IPY+PMLVPPKKWKGY+KGG+LFLPSY+MRTHG + Q++A+ S
Sbjct: 361 CDHLVHEGFESTARHVDIPYLPMLVPPKKWKGYDKGGHLFLPSYIMRTHGVKDQKDAINS 420
Query: 481 VTGNCMKKVFEALDTLGSTKWRVNKQVLSVLESIWVSGGNIAGLVDRNDVLIPEKPLSED 540
V ++KVFEALD LGSTKWRVN++V V+E+IW GG IAGLVD+ ++ +PE+P SED
Sbjct: 421 VPRKQLRKVFEALDILGSTKWRVNRRVHDVVETIWSQGGGIAGLVDKANIPLPERPESED 480
Query: 541 MTEVQKWKWSVRKAKKINQERHSQRCDTELKLSVARRMKDEEGFYYPHNLDFRGRAYPMH 600
E+QKWKWS++KAKK N+E H++RCDTELKLSVAR+M++E+GFYYPHNLDFRGRAYPMH
Sbjct: 481 PDEMQKWKWSLKKAKKTNRELHAERCDTELKLSVARKMREEDGFYYPHNLDFRGRAYPMH 540
Query: 601 PHLNHLSSDVCRGVLEFAEGRPLGKSGLRWLKIHLANLFSGGVEKLSHDGRLAFVENHLY 660
PHL+HL SD+CRGVLE+AEGRPLGKSGL WLKIHLAN + GG+EKLSH+G+LAFVEN L+
Sbjct: 541 PHLSHLGSDLCRGVLEYAEGRPLGKSGLCWLKIHLANKYGGGIEKLSHEGKLAFVENQLF 600
Query: 661 EIFDSAENPINGSRWWLTAEDPFQCLAACINLSEALKSSSPHSVISHLPIHQDGSCNGLQ 720
+IFDSA NP++G+ WW AEDPFQCLAAC++LS+AL+S SP+ +SHLPIHQDGSCNGLQ
Sbjct: 601 DIFDSAANPVDGNCWWTNAEDPFQCLAACMDLSDALRSPSPYHAVSHLPIHQDGSCNGLQ 660
Query: 721 HYAALGRNTLEAAAVNLVAGEKPADVYSEIAVRVHEIMKRDSNKDPSKHPQALLAKILID 780
HYAALGR+ + A AVNLV GEKPAD+YSEIA RV ++ DS KDP+ +P A LA+ L+D
Sbjct: 661 HYAALGRDYMGAVAVNLVPGEKPADIYSEIASRVLNVVCEDSMKDPATNPTASLARALVD 720
Query: 781 QVDRKLVKQTVMTSVYGVTFVGAREQIKRRLEEKGHITDDRQLFAAACYAAKVTLTALGE 840
QVDRKLVKQTVMTSVYGVT++GAR+QI +RL+EKG ITDD+ L+ +CYA +VTL ALG+
Sbjct: 721 QVDRKLVKQTVMTSVYGVTYIGARQQITKRLQEKGLITDDKLLYDVSCYATRVTLDALGQ 780
Query: 841 IFEAARSIMGWLGDCAKVIASENQPVRWTTPLGLPVVQPYCKNERHLIRTSLQVLALQRE 900
+F++AR IM WLGDCAK+IAS+NQPV+WT+P+GLPVVQPY K + ++IRTSLQ LAL+RE
Sbjct: 781 MFQSARGIMAWLGDCAKMIASKNQPVKWTSPVGLPVVQPYKKYKNYMIRTSLQCLALRRE 840
Query: 901 GNLVKIRKQRTAFPPNFVHSLDGSHMMMTAVACRDAGLHFAGL 943
G+ + I++Q+ AFPPNFVHSLD SHMMMTA+AC+++GLHFAG+
Sbjct: 841 GDAIAIQRQKAAFPPNFVHSLDSSHMMMTAIACKESGLHFAGV 883
>gi|242093768|ref|XP_002437374.1| hypothetical protein SORBIDRAFT_10g025820 [Sorghum bicolor]
gi|241915597|gb|EER88741.1| hypothetical protein SORBIDRAFT_10g025820 [Sorghum bicolor]
Length = 960
Score = 1026 bits (2653), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 482/769 (62%), Positives = 624/769 (81%), Gaps = 7/769 (0%)
Query: 178 LRRRQVKQETEAWERMVDEYKELEAKMIEKRLAPNLPHIKGLFLGWFGPLSEAIEREQKM 237
LR+RQVK ETEAW R +EY+E+E +M+++RLAP LP++K LF+GWF PL +AI R+Q +
Sbjct: 127 LRQRQVKAETEAWARAAEEYREIEREMLDRRLAPALPYVKSLFVGWFEPLRDAIARDQDV 186
Query: 238 QRTKKQKAAYAPHIELLPADKVAVIVMHKMMGLVMAGHEDR-CVQVVQAAVHIGMAIEQE 296
QR K+ K YA ++ LLPADKVAVIVMHKMMGL+M+ + V+VVQAA IG A+E+E
Sbjct: 187 QRRKRVKHVYAKYLLLLPADKVAVIVMHKMMGLLMSSKDGTGSVRVVQAAHCIGEAVERE 246
Query: 297 IRIHSFLEKTKNYKRKKIIADTEEVLSKEKELLRKRVNSLIKSKRVMEAQKLLKNE-ETK 355
++ SF +K++ +KK + + L KE+ RKRV +L+K +++ EAQKL++ E E +
Sbjct: 247 FKVQSFFQKSR---KKKDQGENDPALEKEQAKCRKRVKTLVKRRKMSEAQKLVQQELELE 303
Query: 356 PWGRDTQAKLGSRLVELLIETAYVQHPVNPADYSPPDVRPAFRHRFKTILKHPGQKTTKR 415
WG + Q KLGSRL+ELL+++A+VQ P + S PD+RPAF+H + + G + K+
Sbjct: 304 EWGTEAQVKLGSRLIELLLDSAFVQPPADQIPDSSPDIRPAFKHVLRQPIIENG-RLKKK 362
Query: 416 YGVVECDPLVLEGLDRSAKHMLIPYVPMLVPPKKWKGYNKGGYLFLPSYVMRTHGSRKQQ 475
+ V+ECD LV +G + +A+H+ IPY+PMLVPPKKWKGYNKGG+LFLPSY+MRTHG + Q+
Sbjct: 363 HWVIECDHLVHDGFESTARHVDIPYLPMLVPPKKWKGYNKGGHLFLPSYIMRTHGVKDQK 422
Query: 476 EALKSVTGNCMKKVFEALDTLGSTKWRVNKQVLSVLESIWVSGGNIAGLVDRNDVLIPEK 535
+A+ SV ++KVFEALD LGSTKWRVN++V V+E+IW GG IAGLVD+ ++ +PE+
Sbjct: 423 DAINSVPRKQLRKVFEALDILGSTKWRVNRRVHDVVETIWSRGGGIAGLVDKANIPLPER 482
Query: 536 PLSEDMTEVQKWKWSVRKAKKINQERHSQRCDTELKLSVARRMKDEEGFYYPHNLDFRGR 595
P SED E+QKWKWS++KAKK N+E H++RCDTELKLSVAR+M++E+GFYYPHNLDFRGR
Sbjct: 483 PESEDPDEMQKWKWSLKKAKKTNRELHAERCDTELKLSVARKMREEDGFYYPHNLDFRGR 542
Query: 596 AYPMHPHLNHLSSDVCRGVLEFAEGRPLGKSGLRWLKIHLANLFSGGVEKLSHDGRLAFV 655
AYPMHPHL+HL SD+CRGVLE+AEGRPLGKSGL WLKIHLAN + GGVEKLSH+G+LAFV
Sbjct: 543 AYPMHPHLSHLGSDLCRGVLEYAEGRPLGKSGLCWLKIHLANKYGGGVEKLSHEGKLAFV 602
Query: 656 ENHLYEIFDSAENPINGSRWWLTAEDPFQCLAACINLSEALKSSSPHSVISHLPIHQDGS 715
EN L +IFDSA NP++G+ WW AEDPFQCLAAC++LS+AL S SP+ +SHLPIHQDGS
Sbjct: 603 ENQLLDIFDSAANPVDGNCWWTNAEDPFQCLAACMDLSDALNSPSPYRTVSHLPIHQDGS 662
Query: 716 CNGLQHYAALGRNTLEAAAVNLVAGEKPADVYSEIAVRVHEIMKRDSNKDPSKHPQALL- 774
CNGLQHYAALGR+ + A AVNLV GEKPAD+YSEIA RV +++ DS KDP+ +P A L
Sbjct: 663 CNGLQHYAALGRDYMGAVAVNLVPGEKPADIYSEIAARVLNVVREDSMKDPATNPTASLD 722
Query: 775 AKILIDQVDRKLVKQTVMTSVYGVTFVGAREQIKRRLEEKGHITDDRQLFAAACYAAKVT 834
I QVDRKLVKQTVMTSVYGVT++GAR+QI +RL+EKG I DD+ L+ +CYA +VT
Sbjct: 723 MGIGSLQVDRKLVKQTVMTSVYGVTYIGARQQITKRLQEKGLIADDKLLYDVSCYATRVT 782
Query: 835 LTALGEIFEAARSIMGWLGDCAKVIASENQPVRWTTPLGLPVVQPYCKNERHLIRTSLQV 894
L ALG++F++AR IM WLGDCAK+IAS+NQPV+WT+P+GLPVVQPY K + ++IRTSLQ
Sbjct: 783 LDALGQMFQSARGIMAWLGDCAKMIASKNQPVKWTSPVGLPVVQPYKKYKNYMIRTSLQC 842
Query: 895 LALQREGNLVKIRKQRTAFPPNFVHSLDGSHMMMTAVACRDAGLHFAGL 943
LAL+REG+ + I++Q+ AFPPNFVHSLD SHMMMTA+AC++AGLHFAG+
Sbjct: 843 LALRREGDAIAIQRQKAAFPPNFVHSLDSSHMMMTAIACKEAGLHFAGV 891
>gi|15221580|ref|NP_177063.1| DNA-directed RNA polymerase 1 [Arabidopsis thaliana]
gi|3914832|sp|P92969.1|RPOT1_ARATH RecName: Full=DNA-directed RNA polymerase 1, mitochondrial; Flags:
Precursor
gi|12323220|gb|AAG51592.1|AC011665_13 DNA-directed RNA polymerase [Arabidopsis thaliana]
gi|1742971|emb|CAA70583.1| mitochondrial singel subunit DNA-directed RNA polymerase
[Arabidopsis thaliana]
gi|2330566|emb|CAA70210.1| mitochondrial single-subunit DNA-dependent RNA polymerase
[Arabidopsis thaliana]
gi|332196752|gb|AEE34873.1| DNA-directed RNA polymerase 1 [Arabidopsis thaliana]
Length = 976
Score = 1024 bits (2647), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 476/782 (60%), Positives = 610/782 (78%), Gaps = 9/782 (1%)
Query: 170 MKKRKFNLLRRRQVKQETEAWERMVDEYKELEAKMIEKRLAPNLPHIKGLFLGWFGPLSE 229
M +KF +L++RQVK ETE WER E +E+ A M E++LAPNLP++K LFLGWF P+
Sbjct: 127 MGAQKFYMLKQRQVKMETEEWERAARECREILADMCEQKLAPNLPYMKSLFLGWFEPVRN 186
Query: 230 AIEREQKMQRTKKQKAAYAPHIELLPADKVAVIVMHKMMGLVMAGHED-RCVQVVQAAVH 288
AI+ + + KK K YAP +E LPADK+AVI MHKMMGL+M E V++V AA
Sbjct: 187 AIQDDLDTFKIKKGKIPYAPFMEQLPADKMAVITMHKMMGLLMTNAEGVGIVKLVNAATQ 246
Query: 289 IGMAIEQEIRIHSFLEKT--KNYKRKKIIAD----TEEVLSKEKELLRKRVNSLIKSKRV 342
IG A+EQE+RI+SFL+K KN K I + +EE+++KE E RK+V L++ ++
Sbjct: 247 IGEAVEQEVRINSFLQKKNKKNATDKTINTEAENVSEEIVAKETEKARKQVTVLMEKNKL 306
Query: 343 MEAQKLL-KNEETKPWGRDTQAKLGSRLVELLIETAYVQHPVNPADYSPPDVRPAFRHRF 401
+ + L+ K++ KPWG++ Q K+G+RL++LL+E AY+Q P D PPD+RPAF+ F
Sbjct: 307 RQVKALVRKHDSFKPWGQEAQVKVGARLIQLLMENAYIQPPAEQFDDGPPDIRPAFKQNF 366
Query: 402 KTILKHPGQKTTKRYGVVECDPLVLEGLDRSAKHMLIPYVPMLVPPKKWKGYNKGGYLFL 461
+T+ KT++RYG +ECDPLVL+GLD+SA+HM+IPY+PML+PP+ W GY++G + FL
Sbjct: 367 RTVTLE-NTKTSRRYGCIECDPLVLKGLDKSARHMVIPYLPMLIPPQNWTGYDQGAHFFL 425
Query: 462 PSYVMRTHGSRKQQEALKSVTGNCMKKVFEALDTLGSTKWRVNKQVLSVLESIWVSGGNI 521
PSYVMRTHG+++Q+ +K ++ V+EALDTLG+TKW++NK+VLS+++ IW +GG I
Sbjct: 426 PSYVMRTHGAKQQRTVMKRTPKEQLEPVYEALDTLGNTKWKINKKVLSLVDRIWANGGRI 485
Query: 522 AGLVDRNDVLIPEKPLSEDMTEVQKWKWSVRKAKKINQERHSQRCDTELKLSVARRMKDE 581
GLVDR DV IPE+P ED + + W+W +KA K N ERHSQRCD ELKL VAR+MKDE
Sbjct: 486 GGLVDREDVPIPEEPEREDQEKFKNWRWESKKAIKQNNERHSQRCDIELKLEVARKMKDE 545
Query: 582 EGFYYPHNLDFRGRAYPMHPHLNHLSSDVCRGVLEFAEGRPLGKSGLRWLKIHLANLFSG 641
EGFYYPHN+DFRGRAYP+HP+LNHL SD+CRG+LEF EG+PLGKSGLRWLKIH+ANL++G
Sbjct: 546 EGFYYPHNVDFRGRAYPIHPYLNHLGSDLCRGILEFCEGKPLGKSGLRWLKIHIANLYAG 605
Query: 642 GVEKLSHDGRLAFVENHLYEIFDSAENPINGSRWWLTAEDPFQCLAACINLSEALKSSSP 701
GV+KL+++ R+AF E+HL +IFDS++ P+ G RWWL AEDPFQCLAACINLSEAL+S P
Sbjct: 606 GVDKLAYEDRIAFTESHLEDIFDSSDRPLEGKRWWLNAEDPFQCLAACINLSEALRSPFP 665
Query: 702 HSVISHLPIHQDGSCNGLQHYAALGRNTLEAAAVNLVAGEKPADVYSEIAVRVHEIMKRD 761
+ ISH+PIHQDGSCNGLQHYAALGR+ L A AVNLV GEKPADVY+EIA RV +IM++D
Sbjct: 666 EAAISHIPIHQDGSCNGLQHYAALGRDKLGADAVNLVTGEKPADVYTEIAARVLKIMQQD 725
Query: 762 SNKDPSKHPQALLAKILIDQVDRKLVKQTVMTSVYGVTFVGAREQIKRRLEEKGHITDDR 821
+ +DP P A AK+++DQVDRKLVKQTVMTSVYGVT+ GAR+QIK+RL+E+G DD
Sbjct: 726 AEEDPETFPNATYAKLMLDQVDRKLVKQTVMTSVYGVTYSGARDQIKKRLKERGTFEDDS 785
Query: 822 QLFAAACYAAKVTLTALGEIFEAARSIMGWLGDCAKVIASENQPVRWTTPLGLPVVQPYC 881
F A+CYAAK+TL AL E+FEAAR+I W GDCAK+IASEN V WTTPLGLPVVQPY
Sbjct: 786 LTFHASCYAAKITLKALEEMFEAARAIKSWFGDCAKIIASENNAVCWTTPLGLPVVQPYR 845
Query: 882 KNERHLIRTSLQVLALQREGNLVKIRKQRTAFPPNFVHSLDGSHMMMTAVACRDAGLHFA 941
K RHL++T+LQVL L RE + V R+Q TAF PNF+HSLDGSHMMMTAVAC AGL FA
Sbjct: 846 KPGRHLVKTTLQVLTLSRETDKVMARRQMTAFAPNFIHSLDGSHMMMTAVACNRAGLSFA 905
Query: 942 GL 943
G+
Sbjct: 906 GV 907
>gi|1865721|emb|CAA69305.1| mitochondrial single-subunit DNA-dependent RNA polymerase
[Chenopodium album]
Length = 988
Score = 1023 bits (2646), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 479/776 (61%), Positives = 617/776 (79%), Gaps = 4/776 (0%)
Query: 170 MKKRKFNLLRRRQVKQETEAWERMVDEYKELEAKMIEKRLAPNLPHIKGLFLGWFGPLSE 229
M ++N+LR+RQ+K ETEAW EY+EL A M E++LAPNLP++K LFLGWF PL +
Sbjct: 146 MTAGRYNVLRKRQIKVETEAWNEAAREYQELLADMCEQKLAPNLPYMKSLFLGWFEPLKD 205
Query: 230 AIEREQKMQRTKKQKAAYAPHIELLPADKVAVIVMHKMMGLVMAGHEDRCVQVVQAAVHI 289
AI+ Q+ + + + Y + LPAD +AVI MHK+MGL+M G + V+QAA I
Sbjct: 206 AIKAHQEACKVGRNRPLYGECFDELPADMMAVITMHKLMGLLMTGSGNGGTTVIQAATQI 265
Query: 290 GMAIEQEIRIHSFLEKTKNYKRKKIIADTEEVLSKEKELLRKRVNSLIKSKRVMEAQKLL 349
G A+EQE +I FLEK+K K+ + E+ +K ++ L K+V +L+K +++ + ++++
Sbjct: 266 GEAVEQEAKIRKFLEKSK--KKPATNNNDEDDSAKAQQRLAKKVTTLMKKQKISQVREIV 323
Query: 350 KN-EETKPWGRDTQAKLGSRLVELLIETAYVQHPVNPADYSPPDVRPAFRHRFKTILKHP 408
+ +++KPW +D Q K+G +L++LL ETAY+Q P + PPD+RPAF H KT+ K
Sbjct: 324 RGQDDSKPWSQDNQVKVGCKLIQLLAETAYIQPPADQLADGPPDIRPAFIHTQKTVCKES 383
Query: 409 GQKTTKRYGVVECDPLVLEGLDRSAKHMLIPYVPMLVPPKKWKGYNKGGYLFLPSYVMRT 468
+ +RYGV+ECDPLV GL+++A+HM+IPY+PML+PP W GY+KG YL+LPSY+MRT
Sbjct: 384 QKGLRRRYGVIECDPLVRRGLEKTARHMVIPYMPMLIPPLNWTGYDKGAYLYLPSYIMRT 443
Query: 469 HGSRKQQEALKSVT-GNCMKKVFEALDTLGSTKWRVNKQVLSVLESIWVSGGNIAGLVDR 527
HG ++Q++A+K V N + VFEALDTLG+TKWRVNK+VLS+++ IW SGG +A LVDR
Sbjct: 444 HGVKQQRDAIKRVARDNNLCTVFEALDTLGNTKWRVNKKVLSIIDRIWASGGCLADLVDR 503
Query: 528 NDVLIPEKPLSEDMTEVQKWKWSVRKAKKINQERHSQRCDTELKLSVARRMKDEEGFYYP 587
D+ +P +P ++D E++KWKW V+ KK N ERHSQRCDTELKL+VAR+MKDEEGFYYP
Sbjct: 504 EDMPLPGEPDTDDAEEIKKWKWKVKHVKKDNAERHSQRCDTELKLAVARKMKDEEGFYYP 563
Query: 588 HNLDFRGRAYPMHPHLNHLSSDVCRGVLEFAEGRPLGKSGLRWLKIHLANLFSGGVEKLS 647
HNLDFRGRAYPMHPHLNHL SD+CRG+LEFAEGRPLGKSGL WLK+H+ANL++GGV+KLS
Sbjct: 564 HNLDFRGRAYPMHPHLNHLGSDLCRGILEFAEGRPLGKSGLNWLKVHVANLYAGGVDKLS 623
Query: 648 HDGRLAFVENHLYEIFDSAENPINGSRWWLTAEDPFQCLAACINLSEALKSSSPHSVISH 707
++GR+AF EN L ++FDSA+ P+ G RWWLTAEDPFQCLAACINL++AL+SSSP +SH
Sbjct: 624 YEGRVAFTENRLDDVFDSADRPLEGRRWWLTAEDPFQCLAACINLTDALRSSSPEDYLSH 683
Query: 708 LPIHQDGSCNGLQHYAALGRNTLEAAAVNLVAGEKPADVYSEIAVRVHEIMKRDSNKDPS 767
+PIHQDGSCNGLQHYAALGR+ L A AVNLVAG KPADVYS IA RV EIM+ D+ KDPS
Sbjct: 684 IPIHQDGSCNGLQHYAALGRDKLGAEAVNLVAGGKPADVYSGIAARVFEIMRGDAEKDPS 743
Query: 768 KHPQALLAKILIDQVDRKLVKQTVMTSVYGVTFVGAREQIKRRLEEKGHITDDRQLFAAA 827
P A AK+L++QVDRKLVKQTVMTSVYGVT++G R+QIKRRL+E+ I DD LFAA+
Sbjct: 744 IEPNAFHAKLLLNQVDRKLVKQTVMTSVYGVTYIGVRDQIKRRLKERDAIVDDNDLFAAS 803
Query: 828 CYAAKVTLTALGEIFEAARSIMGWLGDCAKVIASENQPVRWTTPLGLPVVQPYCKNERHL 887
CYAAK T+TAL E+FEAARSIMGWLGDCAK+IASENQP RW+TPLGLPVVQPY + R L
Sbjct: 804 CYAAKTTMTALEEMFEAARSIMGWLGDCAKIIASENQPARWSTPLGLPVVQPYRNHGRRL 863
Query: 888 IRTSLQVLALQREGNLVKIRKQRTAFPPNFVHSLDGSHMMMTAVACRDAGLHFAGL 943
++TSLQVL L+ + + V ++QRTAFPPNFVHSLDGSHMMMTA+AC+ AG++FAG+
Sbjct: 864 VKTSLQVLTLRCDTDKVMAKRQRTAFPPNFVHSLDGSHMMMTAIACKKAGMNFAGV 919
>gi|255547027|ref|XP_002514571.1| DNA-directed RNA polymerase 2, chloroplast/mitochondrial precursor,
putative [Ricinus communis]
gi|223546175|gb|EEF47677.1| DNA-directed RNA polymerase 2, chloroplast/mitochondrial precursor,
putative [Ricinus communis]
Length = 997
Score = 1022 bits (2642), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 495/783 (63%), Positives = 631/783 (80%), Gaps = 15/783 (1%)
Query: 174 KFNLLRRRQVKQETEAWERMVDEYKELEAKMIEKRLAPNLPHIKGLFLGWFGPLSEAIER 233
K+ +L++RQ+K ETEAWE EY+EL M E++LAPNLP+IK LFLGWF PL +AI +
Sbjct: 148 KYTILKKRQIKMETEAWEEAAREYQELLTDMCEQKLAPNLPYIKSLFLGWFEPLRDAIAK 207
Query: 234 EQKMQRTKKQKAAYAPHIELLPADKVAVIVMHKMMGLVMAGHE-DRCVQVVQAAVHIGMA 292
EQ++ R K K ++ P+ + LPAD +AVI MHK+MGL+M + + V+VVQAA +G A
Sbjct: 208 EQELSREKNNKLSHGPYFDALPADMMAVITMHKLMGLLMTTNGGNGSVRVVQAACAVGEA 267
Query: 293 IEQEIRIHSFLEKTKNY-----------KRKKIIADTEEVLSKEKELLRKRVNSLIKSKR 341
IE E RIH FLEKTK K + + +D E+ L+KE+E LRK+V L+K ++
Sbjct: 268 IEHEARIHRFLEKTKKKKKSTKNEEPEGKLEPVTSDAEK-LAKEQEKLRKKVTELMKKQK 326
Query: 342 VMEAQKLLK-NEETKPWGRDTQAKLGSRLVELLIETAYVQHPVNPADYSPPDVRPAFRHR 400
V + + L K ++++ PWG++ Q K+G RL++LLIETAY+Q PVN PD+RPAF H
Sbjct: 327 VQQVRGLTKGHDDSMPWGQEAQVKVGCRLIQLLIETAYIQPPVNQLGDGLPDIRPAFMHT 386
Query: 401 FKTILKHPGQKTTKRYGVVECDPLVLEGLDRSAKHMLIPYVPMLVPPKKWKGYNKGGYLF 460
K ++K QKT++RYGV+ECDP+V GL++SA+HM+IPY+PMLVPP W+GY++G YLF
Sbjct: 387 LKNVMKDT-QKTSRRYGVIECDPIVRNGLEKSARHMVIPYMPMLVPPLNWEGYDQGAYLF 445
Query: 461 LPSYVMRTHGSRKQQEALKSVTGNCMKKVFEALDTLGSTKWRVNKQVLSVLESIWVSGGN 520
LPSYVMRTHG+++Q+ A+K ++ V+EAL+TLG+TKWR+NK++L+V++ IW +GG
Sbjct: 446 LPSYVMRTHGAKQQRNAVKRTPWKQLEPVYEALNTLGNTKWRINKKILTVVDRIWANGGR 505
Query: 521 IAGLVDRNDVLIPEKPLSEDMTEVQKWKWSVRKAKKINQERHSQRCDTELKLSVARRMKD 580
+AGL+DR D +PE+ +ED E++KWKW V+ KK N ERHSQRCD ELKL+VAR+MKD
Sbjct: 506 LAGLIDREDEPLPEELETEDENEIKKWKWKVKNVKKENSERHSQRCDIELKLAVARKMKD 565
Query: 581 EEGFYYPHNLDFRGRAYPMHPHLNHLSSDVCRGVLEFAEGRPLGKSGLRWLKIHLANLFS 640
E+GFYYPHNLDFRGRAYPMHPHLNHL SD+CRG+LEFAEGRPLGKSG RWLKIHLAN+++
Sbjct: 566 EDGFYYPHNLDFRGRAYPMHPHLNHLGSDMCRGILEFAEGRPLGKSGFRWLKIHLANVYA 625
Query: 641 GGVEKLSHDGRLAFVENHLYEIFDSAENPINGSRWWLTAEDPFQCLAACINLSEALKSSS 700
GGV+KLS++GR+AF ENHL IFDSA+ P+ G RWWL AEDPFQCLA C NL+EA +SSS
Sbjct: 626 GGVDKLSYEGRVAFTENHLDYIFDSADRPLEGRRWWLGAEDPFQCLATCFNLAEAFRSSS 685
Query: 701 PHSVISHLPIHQDGSCNGLQHYAALGRNTLEAAAVNLVAGEKPADVYSEIAVRVHEIMKR 760
P + ISH+PIHQDGSCNGLQHYAALGR+ L AAAVNLV+GEKPADVYS IA RV +IM+
Sbjct: 686 PETTISHMPIHQDGSCNGLQHYAALGRDKLGAAAVNLVSGEKPADVYSGIAARVLDIMRT 745
Query: 761 DSNKDPSKHPQALLAKILIDQVDRKLVKQTVMTSVYGVTFVGAREQIKRRLEEKGHITDD 820
D+ KDP +P AL AK+LI++VDRKLVKQTVMTSVYGVT++GAR+QIKRRL+E+ + DD
Sbjct: 746 DAEKDPGTNPNALHAKLLINEVDRKLVKQTVMTSVYGVTYIGARDQIKRRLKERDAVADD 805
Query: 821 RQLFAAACYAAKVTLTALGEIFEAARSIMGWLGDCAKVIASENQPVRWTTPLGLPVVQPY 880
L+AA+CYAAK TL AL E+FE ARSIM WLG+CAKVIASENQPV+WTTPLGLPVVQPY
Sbjct: 806 PSLYAASCYAAKTTLMALEEMFEGARSIMAWLGECAKVIASENQPVQWTTPLGLPVVQPY 865
Query: 881 CKNERHLIRTSLQVLALQREGNLVKIRKQRTAFPPNFVHSLDGSHMMMTAVACRDAGLHF 940
+ RHLI+TSLQ+LALQ+E + + +++QRTAFPPNFVHSLDGSHMMMTAVAC+ AGL+F
Sbjct: 866 RQLGRHLIKTSLQMLALQKETDKIMVKRQRTAFPPNFVHSLDGSHMMMTAVACKHAGLNF 925
Query: 941 AGL 943
AG+
Sbjct: 926 AGV 928
>gi|2330568|emb|CAA69331.1| mitochondrial single-subunit DNA-dependent RNA polymerase
[Arabidopsis thaliana]
Length = 976
Score = 1019 bits (2634), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 474/782 (60%), Positives = 608/782 (77%), Gaps = 9/782 (1%)
Query: 170 MKKRKFNLLRRRQVKQETEAWERMVDEYKELEAKMIEKRLAPNLPHIKGLFLGWFGPLSE 229
M +KF +L++RQVK ETE WER E +E+ A M E++LAPNLP++K LFLGWF P+
Sbjct: 127 MGAQKFYMLKQRQVKMETEEWERAARECREILADMCEQKLAPNLPYMKSLFLGWFEPVRN 186
Query: 230 AIEREQKMQRTKKQKAAYAPHIELLPADKVAVIVMHKMMGLVMAGHED-RCVQVVQAAVH 288
AI+ + + KK K YAP +E LPADK+AVI MHKMMGL+M E V++V AA
Sbjct: 187 AIQDDLDTFKIKKGKIPYAPFMEQLPADKMAVITMHKMMGLLMTNAEGVGIVKLVNAATQ 246
Query: 289 IGMAIEQEIRIHSFLEKT--KNYKRKKIIAD----TEEVLSKEKELLRKRVNSLIKSKRV 342
IG A+EQE+RI+SFL+K KN K I + +EE+++KE E RK+V L++ ++
Sbjct: 247 IGEAVEQEVRINSFLQKKNKKNATDKTINTEAENVSEEIVAKETEKARKQVTVLMEKNKL 306
Query: 343 MEAQKLL-KNEETKPWGRDTQAKLGSRLVELLIETAYVQHPVNPADYSPPDVRPAFRHRF 401
+ + L+ K++ KPWG++ Q K+G+RL++LL+E AY+Q P D PPD+RPAF+ F
Sbjct: 307 RQVKALVRKHDSFKPWGQEAQVKVGARLIQLLMENAYIQPPAEQFDDGPPDIRPAFKQNF 366
Query: 402 KTILKHPGQKTTKRYGVVECDPLVLEGLDRSAKHMLIPYVPMLVPPKKWKGYNKGGYLFL 461
+T+ KT++RYG +ECDPLVL+GLD+SA+HM+IPY+PML+PP+ W GY++G + FL
Sbjct: 367 RTVTLE-NTKTSRRYGCIECDPLVLKGLDKSARHMVIPYLPMLIPPQNWTGYDQGAHFFL 425
Query: 462 PSYVMRTHGSRKQQEALKSVTGNCMKKVFEALDTLGSTKWRVNKQVLSVLESIWVSGGNI 521
PSYVMRTHG+++Q+ +K ++ V+EALDTLG+TKW++NK+VLS+++ IW +GG I
Sbjct: 426 PSYVMRTHGAKQQRTVMKRTPKEQLEPVYEALDTLGNTKWKINKKVLSLVDRIWANGGRI 485
Query: 522 AGLVDRNDVLIPEKPLSEDMTEVQKWKWSVRKAKKINQERHSQRCDTELKLSVARRMKDE 581
GLVDR DV IP +P ED + + W+W +KA K N ERHSQRCD ELKL VAR+MKDE
Sbjct: 486 GGLVDREDVPIPVEPEREDQEKFKNWRWESKKAIKQNNERHSQRCDIELKLEVARKMKDE 545
Query: 582 EGFYYPHNLDFRGRAYPMHPHLNHLSSDVCRGVLEFAEGRPLGKSGLRWLKIHLANLFSG 641
EGFYYPHN+DFRGRAYP+HP+LNHL SD+CRG+LEF EG+PLGKSGLRWLKIH+ANL++G
Sbjct: 546 EGFYYPHNVDFRGRAYPIHPYLNHLGSDLCRGILEFCEGKPLGKSGLRWLKIHIANLYAG 605
Query: 642 GVEKLSHDGRLAFVENHLYEIFDSAENPINGSRWWLTAEDPFQCLAACINLSEALKSSSP 701
GV+KL+++ R+AF E+HL +IFDS++ P+ G RWWL AEDPFQCLAACINLSEAL+S P
Sbjct: 606 GVDKLAYEDRIAFTESHLEDIFDSSDRPLEGKRWWLNAEDPFQCLAACINLSEALRSPFP 665
Query: 702 HSVISHLPIHQDGSCNGLQHYAALGRNTLEAAAVNLVAGEKPADVYSEIAVRVHEIMKRD 761
+ ISH+PIHQDGSCNGLQHYAALGR+ L A AVNLV GEKPADVY+EIA RV +IM++D
Sbjct: 666 EAAISHIPIHQDGSCNGLQHYAALGRDKLGADAVNLVTGEKPADVYTEIAARVLKIMQQD 725
Query: 762 SNKDPSKHPQALLAKILIDQVDRKLVKQTVMTSVYGVTFVGAREQIKRRLEEKGHITDDR 821
+ +DP P A AK+++DQVDRKLVKQTVMTSVYGVT+ AR+QIK+RL+E+G DD
Sbjct: 726 AEEDPETFPNATYAKLMLDQVDRKLVKQTVMTSVYGVTYSSARDQIKKRLKERGTFEDDS 785
Query: 822 QLFAAACYAAKVTLTALGEIFEAARSIMGWLGDCAKVIASENQPVRWTTPLGLPVVQPYC 881
F A+CYAAK+TL AL E+FEAAR+I W GDCAK+IASEN V WTTPLGLPVVQPY
Sbjct: 786 LTFHASCYAAKITLKALEEMFEAARAIKSWFGDCAKIIASENNAVCWTTPLGLPVVQPYR 845
Query: 882 KNERHLIRTSLQVLALQREGNLVKIRKQRTAFPPNFVHSLDGSHMMMTAVACRDAGLHFA 941
K RHL++T+LQVL L RE + V R+Q TAF PNF+HSLDGSHMMMTAVAC AGL FA
Sbjct: 846 KPGRHLVKTTLQVLTLSRETDKVMARRQMTAFAPNFIHSLDGSHMMMTAVACNRAGLSFA 905
Query: 942 GL 943
G+
Sbjct: 906 GV 907
>gi|297606283|ref|NP_001058231.2| Os06g0652000 [Oryza sativa Japonica Group]
gi|51534999|dbj|BAD38123.1| putative T7 bacteriophage-type single subunit RNA polymerase [Oryza
sativa Japonica Group]
gi|255677283|dbj|BAF20145.2| Os06g0652000 [Oryza sativa Japonica Group]
Length = 806
Score = 1019 bits (2634), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 467/742 (62%), Positives = 612/742 (82%), Gaps = 7/742 (0%)
Query: 204 MIEKRLAPNLPHIKGLFLGWFGPLSEAIEREQKMQRTKKQKAAYAPHIELLPADKVAVIV 263
M+++RLAP LP++K LFLGWF PL +AI R+Q++QR K+ K YA ++ LLPADKVAVIV
Sbjct: 1 MLDRRLAPALPYVKSLFLGWFEPLRDAIARDQEVQRRKRVKHVYAKYLLLLPADKVAVIV 60
Query: 264 MHKMMGLVMAGHED-RCVQVVQAAVHIGMAIEQEIRIHSFLEKTKNYKRKKIIADTEEVL 322
MHKMMGL+M+ + V+VVQAA IG A+E+E ++ +F +KT RKK + + L
Sbjct: 61 MHKMMGLLMSSKDGVASVRVVQAAHCIGEAVEREFKVQTFFQKT----RKKSAGENDLAL 116
Query: 323 SKEKELLRKRVNSLIKSKRVMEAQKLLKNE-ETKPWGRDTQAKLGSRLVELLIETAYVQH 381
KE+ RKRV SL++ +++ EAQK+++ E E + WG ++Q KLG+RL+ELL+++A+VQ
Sbjct: 117 EKEQAKCRKRVKSLVRRRKLTEAQKIVQQEIELEEWGTESQVKLGTRLIELLLDSAFVQS 176
Query: 382 PVNPADYSPPDVRPAFRHRFKTILKHPGQKTTKRYGVVECDPLVLEGLDRSAKHMLIPYV 441
P + S PD+RPAF+H + + G + K++ V+ECDPLV EG + +A+H+ IPY+
Sbjct: 177 PADQTPESSPDIRPAFKHVLRQPIVENG-RLKKKHWVIECDPLVHEGFESTARHVEIPYL 235
Query: 442 PMLVPPKKWKGYNKGGYLFLPSYVMRTHGSRKQQEALKSVTGNCMKKVFEALDTLGSTKW 501
PMLV PKKWKGY+ GGYLFLPSY+MRTHG + Q+EA+KSV ++KVFEALDTLGSTKW
Sbjct: 236 PMLVTPKKWKGYDTGGYLFLPSYIMRTHGVKDQKEAIKSVPRKQLRKVFEALDTLGSTKW 295
Query: 502 RVNKQVLSVLESIWVSGGNIAGLVDRNDVLIPEKPLSEDMTEVQKWKWSVRKAKKINQER 561
RVN++V + +E+IW GG IAGLVD+ ++ +PE+P +ED E+QKWKWS++KAKK N+E
Sbjct: 296 RVNRRVHNAVETIWSRGGGIAGLVDKENIPLPERPETEDPDEIQKWKWSLKKAKKANREL 355
Query: 562 HSQRCDTELKLSVARRMKDEEGFYYPHNLDFRGRAYPMHPHLNHLSSDVCRGVLEFAEGR 621
H++RCDTELKLSVAR+M++E+GFYYPHNLDFRGRAYPMH HL+HL SD+CRGVLE+AEGR
Sbjct: 356 HAERCDTELKLSVARKMREEDGFYYPHNLDFRGRAYPMHAHLSHLGSDLCRGVLEYAEGR 415
Query: 622 PLGKSGLRWLKIHLANLFSGGVEKLSHDGRLAFVENHLYEIFDSAENPINGSRWWLTAED 681
PLGKSGLRWLKIHLAN + GG+EKLSH+ ++AFVEN L +IFDSA NP++G+ WW+ AED
Sbjct: 416 PLGKSGLRWLKIHLANKYGGGIEKLSHEDKVAFVENQLPDIFDSATNPVDGNCWWMNAED 475
Query: 682 PFQCLAACINLSEALKSSSPHSVISHLPIHQDGSCNGLQHYAALGRNTLEAAAVNLVAGE 741
PFQCLAAC++LS+ALKSSSP +SHLPIHQDGSCNGLQHYAALGR+ + AAAVNLV G+
Sbjct: 476 PFQCLAACMDLSDALKSSSPQCAVSHLPIHQDGSCNGLQHYAALGRDYMGAAAVNLVPGD 535
Query: 742 KPADVYSEIAVRVHEIMKRDSNKDPSKHPQALLAKILIDQVDRKLVKQTVMTSVYGVTFV 801
KPAD+YSEIA RV ++++ DS +DP+ +P A LA++L+DQVDRKLVKQTVMTSVYGVT++
Sbjct: 536 KPADIYSEIAARVLDVVREDSMEDPATNPTASLARVLVDQVDRKLVKQTVMTSVYGVTYI 595
Query: 802 GAREQIKRRLEEKGHITDDRQLFAAACYAAKVTLTALGEIFEAARSIMGWLGDCAKVIAS 861
GAR+QI +RL+EKG ITDD+ L+ +CYA +VTL ALG++F++AR IM WLGDCAK+IAS
Sbjct: 596 GARQQITKRLQEKGLITDDKLLYEVSCYATRVTLDALGQMFQSARGIMAWLGDCAKMIAS 655
Query: 862 ENQPVRWTTPLGLPVVQPYCKNERHLIRTSLQVLALQREGNLVKIRKQRTAFPPNFVHSL 921
EN PV+WT+P+GLPVVQPY K + ++IRTSLQ LAL+REG+ + +++Q+ AFPPNFVHSL
Sbjct: 656 ENHPVKWTSPVGLPVVQPYKKYKNYMIRTSLQCLALRREGDAIALQRQKAAFPPNFVHSL 715
Query: 922 DGSHMMMTAVACRDAGLHFAGL 943
D SHMMMTA+AC+ AGLHFAG+
Sbjct: 716 DSSHMMMTAIACKKAGLHFAGV 737
>gi|297841627|ref|XP_002888695.1| mitochondrial DNA-directed RNA polymerase [Arabidopsis lyrata
subsp. lyrata]
gi|297334536|gb|EFH64954.1| mitochondrial DNA-directed RNA polymerase [Arabidopsis lyrata
subsp. lyrata]
Length = 975
Score = 1018 bits (2633), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 475/782 (60%), Positives = 609/782 (77%), Gaps = 9/782 (1%)
Query: 170 MKKRKFNLLRRRQVKQETEAWERMVDEYKELEAKMIEKRLAPNLPHIKGLFLGWFGPLSE 229
M +K+ +LR+RQVK ETE WER E +E+ A M E++LAPNLP++K LFLGWF P+
Sbjct: 126 MGAQKYYMLRQRQVKMETEEWERAARECREILADMCEQKLAPNLPYMKTLFLGWFEPVRN 185
Query: 230 AIEREQKMQRTKKQKAAYAPHIELLPADKVAVIVMHKMMGLVMAGHED-RCVQVVQAAVH 288
AI+ + + + KK K YAP +E LPADK+AVI M+KMMGL+M E V++V AA
Sbjct: 186 AIQADLDLFKIKKGKIPYAPFMEQLPADKMAVITMNKMMGLLMTNVEGVGIVKLVNAATQ 245
Query: 289 IGMAIEQEIRIHSFLEKT--KNYKRKKIIAD----TEEVLSKEKELLRKRVNSLIKSKRV 342
IG A+EQE+RI+SFL+K KN K I + +EE ++KE E RKR L++ ++
Sbjct: 246 IGEAVEQEVRINSFLQKNNKKNATGKTINTEAVHVSEETVAKETEKARKRATVLMEKNKL 305
Query: 343 MEAQKLL-KNEETKPWGRDTQAKLGSRLVELLIETAYVQHPVNPADYSPPDVRPAFRHRF 401
E + L+ K++ KPWG++ Q K+G+RL++LLIE AY+Q P D PPD+RPAF+ F
Sbjct: 306 REVKVLVRKHDSFKPWGQEAQVKVGARLIQLLIENAYIQPPAEQFDDGPPDIRPAFKQNF 365
Query: 402 KTILKHPGQKTTKRYGVVECDPLVLEGLDRSAKHMLIPYVPMLVPPKKWKGYNKGGYLFL 461
+T+ KT++RYG +ECDPLVL+GLD+SA+HM+IPY+PML+PP+ W GY++G +LFL
Sbjct: 366 RTVTLE-NTKTSRRYGCIECDPLVLKGLDKSARHMVIPYLPMLIPPQNWTGYDQGAHLFL 424
Query: 462 PSYVMRTHGSRKQQEALKSVTGNCMKKVFEALDTLGSTKWRVNKQVLSVLESIWVSGGNI 521
PS++MRTHG+ +Q+ ++ ++ VFEALDTLG+TKWR+NK+VLS+++ IW +GG +
Sbjct: 425 PSFIMRTHGAIQQRTVMRRTPKEQLEPVFEALDTLGNTKWRINKKVLSLVDRIWANGGRL 484
Query: 522 AGLVDRNDVLIPEKPLSEDMTEVQKWKWSVRKAKKINQERHSQRCDTELKLSVARRMKDE 581
GLVDR DV +PE+P ED + + WKW +KA K N ERHSQRCD ELKL VAR+MKDE
Sbjct: 485 GGLVDREDVPVPEEPEREDHEKFKNWKWESKKAIKQNNERHSQRCDIELKLEVARKMKDE 544
Query: 582 EGFYYPHNLDFRGRAYPMHPHLNHLSSDVCRGVLEFAEGRPLGKSGLRWLKIHLANLFSG 641
EGFYYPHN+DFRGRAYP+HP+LNHL SD+CRG+LEF EG+PLGKSGLRWLKIH+ANL++G
Sbjct: 545 EGFYYPHNVDFRGRAYPIHPYLNHLGSDLCRGILEFCEGKPLGKSGLRWLKIHIANLYAG 604
Query: 642 GVEKLSHDGRLAFVENHLYEIFDSAENPINGSRWWLTAEDPFQCLAACINLSEALKSSSP 701
GV+KL+++ R+AF E+HL +I+DS++ P+ G RWWL AEDPFQCLAACINLSEAL+S P
Sbjct: 605 GVDKLAYEDRIAFTESHLEDIYDSSDRPLEGKRWWLNAEDPFQCLAACINLSEALRSPFP 664
Query: 702 HSVISHLPIHQDGSCNGLQHYAALGRNTLEAAAVNLVAGEKPADVYSEIAVRVHEIMKRD 761
+ ISH+PIHQDGSCNGLQHYAALGR+ L A AVNLV GEKPADVY+EIA RV +IM++D
Sbjct: 665 EAAISHIPIHQDGSCNGLQHYAALGRDKLGADAVNLVTGEKPADVYAEIAARVFKIMQQD 724
Query: 762 SNKDPSKHPQALLAKILIDQVDRKLVKQTVMTSVYGVTFVGAREQIKRRLEEKGHITDDR 821
+ +DP P A AK+++DQVDRKLVKQTVMTSVYGVT+ GAR+QIK+RL+E+G DD
Sbjct: 725 AKEDPETFPNATYAKLMLDQVDRKLVKQTVMTSVYGVTYSGARDQIKKRLKERGTFEDDS 784
Query: 822 QLFAAACYAAKVTLTALGEIFEAARSIMGWLGDCAKVIASENQPVRWTTPLGLPVVQPYC 881
F AACYAAK+TL AL E+FEAAR+I W GDCAK+IASEN+ V WTTPLGLPVVQPY
Sbjct: 785 LTFHAACYAAKITLKALEEMFEAARAIKSWFGDCAKIIASENKAVCWTTPLGLPVVQPYR 844
Query: 882 KNERHLIRTSLQVLALQREGNLVKIRKQRTAFPPNFVHSLDGSHMMMTAVACRDAGLHFA 941
K RHL++T+LQVL L RE + V R+Q TAF PNF+HSLDGSHMMMTAVAC GL FA
Sbjct: 845 KPGRHLVKTTLQVLTLSRETDKVAARRQMTAFAPNFIHSLDGSHMMMTAVACNRVGLSFA 904
Query: 942 GL 943
G+
Sbjct: 905 GV 906
>gi|334183757|ref|NP_001185355.1| DNA-directed RNA polymerase 1 [Arabidopsis thaliana]
gi|332196753|gb|AEE34874.1| DNA-directed RNA polymerase 1 [Arabidopsis thaliana]
Length = 983
Score = 1016 bits (2628), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 476/789 (60%), Positives = 610/789 (77%), Gaps = 16/789 (2%)
Query: 170 MKKRKFNLLRRRQVKQETEAWERMVDEYKELEAKMIEKRLAPNLPHIKGLFLGWFGPLSE 229
M +KF +L++RQVK ETE WER E +E+ A M E++LAPNLP++K LFLGWF P+
Sbjct: 127 MGAQKFYMLKQRQVKMETEEWERAARECREILADMCEQKLAPNLPYMKSLFLGWFEPVRN 186
Query: 230 AIEREQKMQRTKKQKAAYAPHIELLPADKVAVIVMHKMMGLVMAGHED-RCVQVVQAAVH 288
AI+ + + KK K YAP +E LPADK+AVI MHKMMGL+M E V++V AA
Sbjct: 187 AIQDDLDTFKIKKGKIPYAPFMEQLPADKMAVITMHKMMGLLMTNAEGVGIVKLVNAATQ 246
Query: 289 IGMAIEQEIRIHSFLEKT--KNYKRKKIIAD----TEEVLSKEKELLRKRVNSLIKSKRV 342
IG A+EQE+RI+SFL+K KN K I + +EE+++KE E RK+V L++ ++
Sbjct: 247 IGEAVEQEVRINSFLQKKNKKNATDKTINTEAENVSEEIVAKETEKARKQVTVLMEKNKL 306
Query: 343 MEAQKLL-KNEETKPWGRDTQAKLGSRLVELLIETAYVQHPVNPADYSPPDVRPAFRHRF 401
+ + L+ K++ KPWG++ Q K+G+RL++LL+E AY+Q P D PPD+RPAF+ F
Sbjct: 307 RQVKALVRKHDSFKPWGQEAQVKVGARLIQLLMENAYIQPPAEQFDDGPPDIRPAFKQNF 366
Query: 402 KTILKHPGQKTTKRYGVVECDPLVLEGLDRS-------AKHMLIPYVPMLVPPKKWKGYN 454
+T+ KT++RYG +ECDPLVL+GLD+S A+HM+IPY+PML+PP+ W GY+
Sbjct: 367 RTVTLE-NTKTSRRYGCIECDPLVLKGLDKSVSRIVDYARHMVIPYLPMLIPPQNWTGYD 425
Query: 455 KGGYLFLPSYVMRTHGSRKQQEALKSVTGNCMKKVFEALDTLGSTKWRVNKQVLSVLESI 514
+G + FLPSYVMRTHG+++Q+ +K ++ V+EALDTLG+TKW++NK+VLS+++ I
Sbjct: 426 QGAHFFLPSYVMRTHGAKQQRTVMKRTPKEQLEPVYEALDTLGNTKWKINKKVLSLVDRI 485
Query: 515 WVSGGNIAGLVDRNDVLIPEKPLSEDMTEVQKWKWSVRKAKKINQERHSQRCDTELKLSV 574
W +GG I GLVDR DV IPE+P ED + + W+W +KA K N ERHSQRCD ELKL V
Sbjct: 486 WANGGRIGGLVDREDVPIPEEPEREDQEKFKNWRWESKKAIKQNNERHSQRCDIELKLEV 545
Query: 575 ARRMKDEEGFYYPHNLDFRGRAYPMHPHLNHLSSDVCRGVLEFAEGRPLGKSGLRWLKIH 634
AR+MKDEEGFYYPHN+DFRGRAYP+HP+LNHL SD+CRG+LEF EG+PLGKSGLRWLKIH
Sbjct: 546 ARKMKDEEGFYYPHNVDFRGRAYPIHPYLNHLGSDLCRGILEFCEGKPLGKSGLRWLKIH 605
Query: 635 LANLFSGGVEKLSHDGRLAFVENHLYEIFDSAENPINGSRWWLTAEDPFQCLAACINLSE 694
+ANL++GGV+KL+++ R+AF E+HL +IFDS++ P+ G RWWL AEDPFQCLAACINLSE
Sbjct: 606 IANLYAGGVDKLAYEDRIAFTESHLEDIFDSSDRPLEGKRWWLNAEDPFQCLAACINLSE 665
Query: 695 ALKSSSPHSVISHLPIHQDGSCNGLQHYAALGRNTLEAAAVNLVAGEKPADVYSEIAVRV 754
AL+S P + ISH+PIHQDGSCNGLQHYAALGR+ L A AVNLV GEKPADVY+EIA RV
Sbjct: 666 ALRSPFPEAAISHIPIHQDGSCNGLQHYAALGRDKLGADAVNLVTGEKPADVYTEIAARV 725
Query: 755 HEIMKRDSNKDPSKHPQALLAKILIDQVDRKLVKQTVMTSVYGVTFVGAREQIKRRLEEK 814
+IM++D+ +DP P A AK+++DQVDRKLVKQTVMTSVYGVT+ GAR+QIK+RL+E+
Sbjct: 726 LKIMQQDAEEDPETFPNATYAKLMLDQVDRKLVKQTVMTSVYGVTYSGARDQIKKRLKER 785
Query: 815 GHITDDRQLFAAACYAAKVTLTALGEIFEAARSIMGWLGDCAKVIASENQPVRWTTPLGL 874
G DD F A+CYAAK+TL AL E+FEAAR+I W GDCAK+IASEN V WTTPLGL
Sbjct: 786 GTFEDDSLTFHASCYAAKITLKALEEMFEAARAIKSWFGDCAKIIASENNAVCWTTPLGL 845
Query: 875 PVVQPYCKNERHLIRTSLQVLALQREGNLVKIRKQRTAFPPNFVHSLDGSHMMMTAVACR 934
PVVQPY K RHL++T+LQVL L RE + V R+Q TAF PNF+HSLDGSHMMMTAVAC
Sbjct: 846 PVVQPYRKPGRHLVKTTLQVLTLSRETDKVMARRQMTAFAPNFIHSLDGSHMMMTAVACN 905
Query: 935 DAGLHFAGL 943
AGL FAG+
Sbjct: 906 RAGLSFAGV 914
>gi|356526655|ref|XP_003531932.1| PREDICTED: DNA-directed RNA polymerase 1B, mitochondrial-like
[Glycine max]
Length = 949
Score = 1014 bits (2621), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 488/774 (63%), Positives = 611/774 (78%), Gaps = 11/774 (1%)
Query: 180 RRQVKQETEAWERMVDEYKELEAKMIEKRLAPNLPHIKGLFLGWFGPLSEAIEREQKMQR 239
RRQ+K ETEAW EY+EL M E++LAPNLP++K LFLGWF PL AI +Q++ +
Sbjct: 108 RRQIKSETEAWAEAAREYEELLEDMREQKLAPNLPYMKSLFLGWFEPLRNAILADQELCK 167
Query: 240 TKKQKAAYAPHIELLPADKVAVIVMHKMMGLVMAGHED-RCVQVVQAAVHIGMAIEQEIR 298
K + ++AP+ LPAD +AV+ MHK+M L+M +V+QAA IG A+E E R
Sbjct: 168 DSKCRMSHAPYFNDLPADMMAVVTMHKLMALLMTNTNGVGTARVIQAACQIGEAVENEAR 227
Query: 299 IHSFLEKTKNYKRKKIIAD------TEE--VLSKEKELLRKRVNSLIKSKRVMEAQKLLK 350
I+ F+++ K K ++ TEE + K++ LRKRV +L+K ++ ++A +++
Sbjct: 228 IYQFMKREKENKSSHVVPVEQRGELTEENGEMDKKQSRLRKRVAALMKKQKKLQAMGIVR 287
Query: 351 NEET-KPWGRDTQAKLGSRLVELLIETAYVQHPVNPADYSPPDVRPAFRHRFKTILKHPG 409
++ K WG++ Q K+GSRL++LLIETAY+Q P N PPD+RPAF+H KT L
Sbjct: 288 GQDDWKAWGQEAQVKVGSRLMQLLIETAYIQPPANLIGDGPPDIRPAFKHTLKT-LSSES 346
Query: 410 QKTTKRYGVVECDPLVLEGLDRSAKHMLIPYVPMLVPPKKWKGYNKGGYLFLPSYVMRTH 469
QK T+RYGV+ECDPLV GL++SA+HM+IPY+PMLVPP W GY+KG YLFLPSYVMR H
Sbjct: 347 QKETRRYGVIECDPLVQNGLEKSARHMVIPYMPMLVPPINWTGYDKGAYLFLPSYVMRVH 406
Query: 470 GSRKQQEALKSVTGNCMKKVFEALDTLGSTKWRVNKQVLSVLESIWVSGGNIAGLVDRND 529
G+++Q+EA+K + + VFEAL+TLGSTKWRVNK+VL V++ IW +GG +A LVDR +
Sbjct: 407 GAKQQREAVKRAPKSQLDPVFEALNTLGSTKWRVNKRVLCVIDQIWANGGRLADLVDREN 466
Query: 530 VLIPEKPLSEDMTEVQKWKWSVRKAKKINQERHSQRCDTELKLSVARRMKDEEGFYYPHN 589
V P++P ++D E++KWKW V+ KK N ERHSQRCD ELKL+VAR+MKDEEGFYYPHN
Sbjct: 467 VPEPKEPDTKDEAEIRKWKWKVKAVKKENNERHSQRCDIELKLAVARKMKDEEGFYYPHN 526
Query: 590 LDFRGRAYPMHPHLNHLSSDVCRGVLEFAEGRPLGKSGLRWLKIHLANLFSGGVEKLSHD 649
LDFRGRAYPMHP+LNHL SD+CRG+LEF+EGRPLGKSGL WLKIHLANL++GGV+KLS+D
Sbjct: 527 LDFRGRAYPMHPYLNHLGSDLCRGILEFSEGRPLGKSGLCWLKIHLANLYAGGVDKLSYD 586
Query: 650 GRLAFVENHLYEIFDSAENPINGSRWWLTAEDPFQCLAACINLSEALKSSSPHSVISHLP 709
GR+ F ENHL +IFDSA+ P+ G RWWL AEDPFQCLAAC NLSEAL+S +P + ISH+P
Sbjct: 587 GRIEFTENHLDDIFDSADRPLEGKRWWLQAEDPFQCLAACTNLSEALRSPTPETTISHMP 646
Query: 710 IHQDGSCNGLQHYAALGRNTLEAAAVNLVAGEKPADVYSEIAVRVHEIMKRDSNKDPSKH 769
+HQDGSCNGLQHYAALGR+ L AAAVNLV G++PADVYS IA RV EIMKRD+ KDP +
Sbjct: 647 VHQDGSCNGLQHYAALGRDKLGAAAVNLVGGDQPADVYSGIAARVLEIMKRDAEKDPQTN 706
Query: 770 PQALLAKILIDQVDRKLVKQTVMTSVYGVTFVGAREQIKRRLEEKGHITDDRQLFAAACY 829
P AL A+ LI+QVDRKLVKQTVMTSVYGVT++GAR+QIKRRL+E+ I DD +LFAA+CY
Sbjct: 707 PNALHARRLINQVDRKLVKQTVMTSVYGVTYIGARDQIKRRLKERCAIEDDVELFAASCY 766
Query: 830 AAKVTLTALGEIFEAARSIMGWLGDCAKVIASENQPVRWTTPLGLPVVQPYCKNERHLIR 889
AA+ TLTAL E+FEAARSIM WLGDCAKVIAS NQ V+W TPLGLPVVQPY + RHLI+
Sbjct: 767 AARTTLTALEEMFEAARSIMSWLGDCAKVIASTNQAVQWITPLGLPVVQPYRQFGRHLIK 826
Query: 890 TSLQVLALQREGNLVKIRKQRTAFPPNFVHSLDGSHMMMTAVACRDAGLHFAGL 943
TSLQ+L LQRE N V +++QRTAFPPNFVHSLDGSHMMMT VAC+ AGL+FAG+
Sbjct: 827 TSLQILTLQRETNKVMVKRQRTAFPPNFVHSLDGSHMMMTTVACKKAGLNFAGV 880
>gi|356560775|ref|XP_003548663.1| PREDICTED: DNA-directed RNA polymerase 1B, mitochondrial-like
[Glycine max]
Length = 955
Score = 1011 bits (2613), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 484/780 (62%), Positives = 610/780 (78%), Gaps = 13/780 (1%)
Query: 174 KFNLLRRRQVKQETEAWERMVDEYKELEAKMIEKRLAPNLPHIKGLFLGWFGPLSEAIER 233
K+ LL+RRQ++ ETEAW EY EL M +K+LAPNLP++K LFLGWF PL AI
Sbjct: 110 KYKLLKRRQIESETEAWAEAAREYGELLEDMRDKKLAPNLPYMKSLFLGWFEPLRNAILA 169
Query: 234 EQKMQRTKKQKAAYAPHIELLPADKVAVIVMHKMMGLVMAGHED-RCVQVVQAAVHIGMA 292
+Q + + K + ++AP+ LPAD +AV+ MHK+M L+M +V+QAA IG A
Sbjct: 170 DQDLCKDSKCRMSHAPYFNDLPADMMAVVTMHKLMALLMTNANGVGTARVIQAACQIGEA 229
Query: 293 IEQEIRIHSFLEKTKNYKRKKI--------IADTEEVLSKEKELLRKRVNSLIKSKRVME 344
+E E RI+ F+++ K K + + + + +++ LRKRV L+K ++ ++
Sbjct: 230 VENEARIYQFMKREKENKSSHLAPVEQSGKLTEENGEMEQKQSRLRKRVAGLMKKQKKLQ 289
Query: 345 AQKLL-KNEETKPWGRDTQAKLGSRLVELLIETAYVQHPVNPADYSPPDVRPAFRHRFKT 403
A ++ + ++ K WG++ Q K+GSRL++LLIETAY+Q P N PPD+ PAFRH +T
Sbjct: 290 AMGIIGRQDDWKTWGQEAQVKVGSRLMQLLIETAYIQPPTNQIGDGPPDIHPAFRHTLRT 349
Query: 404 ILKHPGQKTTKRYGVVECDPLVLEGLDRSAKHMLIPYVPMLVPPKKWKGYNKGGYLFLPS 463
+ ++ T+RYGV+ECDPLV GL++SA+HM+IPY+PMLVPP W GY+KG YLFLPS
Sbjct: 350 L---SNERETRRYGVIECDPLVQNGLEKSARHMVIPYMPMLVPPINWTGYDKGAYLFLPS 406
Query: 464 YVMRTHGSRKQQEALKSVTGNCMKKVFEALDTLGSTKWRVNKQVLSVLESIWVSGGNIAG 523
YVMR HG+++Q+EA+K + + VFEAL+TLG+TKWRVNK+VL V++ IW +GG +A
Sbjct: 407 YVMRVHGAKQQREAVKRAPKSQLDPVFEALNTLGNTKWRVNKRVLCVIDQIWANGGRLAD 466
Query: 524 LVDRNDVLIPEKPLSEDMTEVQKWKWSVRKAKKINQERHSQRCDTELKLSVARRMKDEEG 583
LVDR +V P++P + D E++KWKW V+ KK N ERHSQRCD ELKL+VAR+MKDEE
Sbjct: 467 LVDRENVPSPKEPDTIDEAEIRKWKWKVKAVKKENSERHSQRCDIELKLAVARKMKDEEA 526
Query: 584 FYYPHNLDFRGRAYPMHPHLNHLSSDVCRGVLEFAEGRPLGKSGLRWLKIHLANLFSGGV 643
FYYPHNLDFRGRAYPMHP+LNHL SD+CRG+LEFAEGR LGKSGLRWLKIHLANL++GGV
Sbjct: 527 FYYPHNLDFRGRAYPMHPYLNHLGSDLCRGILEFAEGRSLGKSGLRWLKIHLANLYAGGV 586
Query: 644 EKLSHDGRLAFVENHLYEIFDSAENPINGSRWWLTAEDPFQCLAACINLSEALKSSSPHS 703
+KLS+DGR++F ENHL +IFDSA+ P+ G WWL AEDPFQCLAACINLSEAL+S +P +
Sbjct: 587 DKLSYDGRISFTENHLDDIFDSADRPLEGKHWWLQAEDPFQCLAACINLSEALRSPTPET 646
Query: 704 VISHLPIHQDGSCNGLQHYAALGRNTLEAAAVNLVAGEKPADVYSEIAVRVHEIMKRDSN 763
ISH+P+HQDGSCNGLQHYAALGR+ L AAAVNLV G++PADVYS IA RV EIMKRD+
Sbjct: 647 TISHMPVHQDGSCNGLQHYAALGRDKLGAAAVNLVGGDQPADVYSGIAARVLEIMKRDAE 706
Query: 764 KDPSKHPQALLAKILIDQVDRKLVKQTVMTSVYGVTFVGAREQIKRRLEEKGHITDDRQL 823
KDP +P AL A+ LI QVDRKLVKQTVMTSVYGVT++GAR+QIKRRL+E+ I DD +L
Sbjct: 707 KDPRTNPNALHARRLISQVDRKLVKQTVMTSVYGVTYIGARDQIKRRLKERCAIEDDVEL 766
Query: 824 FAAACYAAKVTLTALGEIFEAARSIMGWLGDCAKVIASENQPVRWTTPLGLPVVQPYCKN 883
FAA+CYAAK TLTAL E+FEAARSIMGWLGDCAKVIA+ NQ VRW TPLGLPVVQPY +
Sbjct: 767 FAASCYAAKTTLTALEEMFEAARSIMGWLGDCAKVIAATNQAVRWITPLGLPVVQPYRQF 826
Query: 884 ERHLIRTSLQVLALQREGNLVKIRKQRTAFPPNFVHSLDGSHMMMTAVACRDAGLHFAGL 943
RHLI+TSLQ+L LQRE N V +++QRTAFPPNFVHSLDGSHMMMTAVAC+ AGL+FAG+
Sbjct: 827 GRHLIKTSLQILTLQRETNKVMVKRQRTAFPPNFVHSLDGSHMMMTAVACKKAGLNFAGV 886
>gi|90657592|gb|ABD96891.1| hypothetical protein [Cleome spinosa]
Length = 1021
Score = 1008 bits (2606), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 482/790 (61%), Positives = 612/790 (77%), Gaps = 43/790 (5%)
Query: 160 KRIKLQEYREMKKRKFNLLRRRQVKQETEAWERMVDEYKELEAKMIEKRLAPNLPHIKGL 219
+R+K QE M ++K+ L+RRQVK ETEAWE+ +EYKEL M E++LAPNLP++K L
Sbjct: 174 RRVKRQEDLGMLEKKYQSLKRRQVKIETEAWEKAANEYKELLTDMCEQKLAPNLPYVKSL 233
Query: 220 FLGWFGPLSEAIEREQKMQRTKKQKAAYAPHIELLPADKVAVIVMHKMMGLVMAGHEDRC 279
FLGWF PL EAI ++Q++ R K +A YA +I+ LPAD +AVI MHK+MGL+M G ++ C
Sbjct: 234 FLGWFEPLREAIAKDQELYRLGKNRANYAYYIDQLPADMIAVITMHKLMGLLMTGGDNGC 293
Query: 280 VQVVQAAVHIGMAIEQEIRIHSFLEKTKNYKRKKIIAD-----TEEVLSKEKELLRKRVN 334
V+V+ AA +G AIEQEIRI FLEKTK K+K+ I++ +E KE++ L+++V+
Sbjct: 294 VKVIMAACTVGDAIEQEIRICRFLEKTK--KKKENISEGVENVEKETTVKEEDWLKRKVS 351
Query: 335 SLIKSKRVMEAQKLLKNEE-TKPWGRDTQAKLGSRLVELLIETAYVQHPVNPADYSPPDV 393
LIK +++ +++L + + +KPW D +AK+GSRL+EL ++TAY+Q P N PPD+
Sbjct: 352 ELIKKQKLPAVRQILNSHDASKPWSTDVRAKVGSRLIELFMKTAYIQPPTNQRGDDPPDI 411
Query: 394 RPAFRHRFKTILKHPGQKTTKRYGVVECDPLVLEGLDRSAKHMLIPYVPMLVPPKKWKGY 453
RPAF H FKT+ +K+ +RYGV+ECDPLV +GL+++ HM++PY+PMLVPP W GY
Sbjct: 412 RPAFVHTFKTVKN--SKKSGRRYGVIECDPLVRKGLEKTGWHMVMPYMPMLVPPVNWSGY 469
Query: 454 NKGGYLFLPSYVMRTHGSRKQQEALKSVTGNCMKKVFEALDTLGSTKWRVNKQVLSVLES 513
++G Y FLPSY+MR HG+++Q+EALKS ++ VFEALDTLG+ KWRVNK+VLS+++
Sbjct: 470 DRGAYFFLPSYLMRIHGAKQQREALKSTPRKQLQLVFEALDTLGNAKWRVNKRVLSIVDR 529
Query: 514 IWVSGGNIAGLVDRNDVLIPEKPLSEDMTEVQKWKWSVRKAKKINQERHSQRCDTELKLS 573
IW SGG +A LVDR+DV +PEKP +ED ++KWKW V+ A K N+ERHSQRCD ELKL+
Sbjct: 530 IWNSGGRLADLVDRSDVPLPEKPDTEDENILKKWKWKVKSANKENRERHSQRCDIELKLN 589
Query: 574 VARRMKDEEGFYYPHNLDFRGRAYPMHPHLNHLSSDVCRGVLEFAEGRPLGKSGLRWLKI 633
VAR+MKDEEGFYYPHN+DFRGRAYPMHPHLNHL SD+CRGVLEFAEG+PLG SGLRWLKI
Sbjct: 590 VARKMKDEEGFYYPHNIDFRGRAYPMHPHLNHLGSDLCRGVLEFAEGKPLGSSGLRWLKI 649
Query: 634 HLANLFSGGVEKLSHDGRLAFVENHLYEIFDSAENPINGSRWWLTAEDPFQCLAACINLS 693
HLANL++GGV+KLS +GRLAF ENHL +IF+SA+ P+ G RWWL AEDPFQCLA CIN++
Sbjct: 650 HLANLYAGGVDKLSFEGRLAFTENHLDDIFNSADRPLEGRRWWLQAEDPFQCLAVCINIT 709
Query: 694 EALKSSSPHSVISHLPIHQDGSCNGLQHYAALGRNTLEAAAVNLVAGEKPADVYSEIAVR 753
EAL+S P + +SH+PIHQ G AAAVNLVAGEKPADVYS IA R
Sbjct: 710 EALRSPCPETFVSHIPIHQLG-----------------AAAVNLVAGEKPADVYSGIAAR 752
Query: 754 VHEIMKRDSNKDPSKHPQALLAKILIDQVDRKLVKQTVMTSVYGVTFVGAREQIKRRLEE 813
V +IM+RD+ +DP P AL A+ L++QVDRKLVKQTVMTSVYGVT++GAR+QIKRRL+E
Sbjct: 753 VLDIMRRDAEQDPEVFPDALRARNLVNQVDRKLVKQTVMTSVYGVTYIGARDQIKRRLKE 812
Query: 814 KGHITDDRQLFAAACYAAKVTLTALGEIFEAARSIMGWLGDCAKVIASENQPVRWTTPLG 873
+ TDD +LF AACYAAKVTLTALGE+F+AAR IM WLG+CAK+IAS+NQPVRWTTPLG
Sbjct: 813 RSIFTDDTELFGAACYAAKVTLTALGEMFQAARDIMSWLGECAKIIASQNQPVRWTTPLG 872
Query: 874 LPVVQPYCKNERHLIRTSLQVLALQREGNLVKIRKQRTAFPPNFVHSLDGSHMMMTAVAC 933
LPVVQPY K RH V +++QRTAFPPNFVHSLDGSHMMMTAVAC
Sbjct: 873 LPVVQPYRKMGRH----------------TVMVKRQRTAFPPNFVHSLDGSHMMMTAVAC 916
Query: 934 RDAGLHFAGL 943
R AG+ FAG+
Sbjct: 917 RKAGICFAGV 926
>gi|195970381|gb|ACG60670.1| hypothetical protein BoB028L01.020 [Brassica oleracea var.
alboglabra]
Length = 951
Score = 972 bits (2512), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 453/781 (58%), Positives = 597/781 (76%), Gaps = 24/781 (3%)
Query: 170 MKKRKFNLLRRRQVKQETEAWERMVDEYKELEAKMIEKRLAPNLPHIKGLFLGWFGPLSE 229
M +K+ L++RQVK ETE WE+ E +E+ M E++LAPNLP++K LFLGWF PL +
Sbjct: 119 MGAQKYYSLKQRQVKLETEEWEKAAKECQEIIEDMCEQKLAPNLPYVKSLFLGWFEPLRD 178
Query: 230 AIEREQKMQRTKKQKAAYAPHIELLPADKVAVIVMHKMMGLVMAGHED-RCVQVVQAAVH 288
AI+ + + KK K YA ++E LPAD +AVI MHKMMGL+M E V+VV AA
Sbjct: 179 AIQADLDGFKVKKGKIPYASYMEQLPADMMAVITMHKMMGLLMTNAEGVGVVKVVNAATQ 238
Query: 289 IGMAIEQEIRIHSFLEKTKNY-----KRKKIIADTEEVLSKEKELLRKRVNSLIKSKRVM 343
IG AIEQE RI SF++K K + + + EV +KE L+K++N+L+K +V
Sbjct: 239 IGEAIEQEARITSFMKKAKKKKNVVDDESEAVNASGEVETKETLKLKKQINTLLKKHKVR 298
Query: 344 EAQKLLKNEET-KPWGRDTQAKLGSRLVELLIETAYVQHPVNPADYSPPDVRPAFRHRFK 402
+ ++++K ++ K WG++ Q K+G+RL++LL+ETAY+Q P D PP++RPAF+ +
Sbjct: 299 QVREIVKAHDSFKSWGQEAQVKVGARLIQLLMETAYIQPPAEQFDDGPPEIRPAFKQSSR 358
Query: 403 TILKHPGQKTTKRYGVVECDPLVLEGLDRSAKHMLIPYVPMLVPPKKWKGYNKGGYLFLP 462
I+ +K +++YG +ECDPL+ +GLD+SA+HM+IPY+PML+PP+ W GY++G + FLP
Sbjct: 359 -IVTIENKKLSRKYGCIECDPLIRKGLDKSARHMVIPYLPMLIPPQNWTGYDQGAHFFLP 417
Query: 463 SYVMRTHGSRKQQEALKSVTGNCMKKVFEALDTLGSTKWRVNKQVLSVLESIWVSGGNIA 522
SY+MRTHG+++Q+ A+K ++ VF+ L+TLG+TKWR+NK+VLS+++ IW +GG +
Sbjct: 418 SYIMRTHGAKQQRIAIKRTPKAQLEPVFQGLNTLGNTKWRINKKVLSLVDRIWANGGRVG 477
Query: 523 GLVDRNDVLIPEKPLSEDMTEVQKWKWSVRKAKKINQERHSQRCDTELKLSVARRMKDEE 582
GLVDR+DV IPE+P SED E+++WKW +++A K N ERHSQRCD ELKL VAR+MKDEE
Sbjct: 478 GLVDRDDVPIPEEPDSEDQEEIKQWKWKMKEANKENSERHSQRCDVELKLEVARKMKDEE 537
Query: 583 GFYYPHNLDFRGRAYPMHPHLNHLSSDVCRGVLEFAEGRPLGKSGLRWLKIHLANLFSGG 642
GFY+PHN+DFRGRAYPMHP+LNHL SD+CRG+LEF EG+PLG+SGLRWLKIH+ANL+ GG
Sbjct: 538 GFYFPHNVDFRGRAYPMHPYLNHLGSDLCRGILEFCEGKPLGESGLRWLKIHIANLYGGG 597
Query: 643 VEKLSHDGRLAFVENHLYEIFDSAENPINGSRWWLTAEDPFQCLAACINLSEALKSSSPH 702
V+K ++ R+AF E+HL +IFDS++ P+ G RWWL AEDPFQCLAAC+NLSEAL+S P
Sbjct: 598 VDKFAYKDRVAFAESHLEDIFDSSDRPLEGKRWWLNAEDPFQCLAACMNLSEALRSPFPE 657
Query: 703 SVISHLPIHQDGSCNGLQHYAALGRNTLEAAAVNLVAGEKPADVYSEIAVRVHEIMKRDS 762
+ +SH+PIHQDGSCNGLQHYAALGR+ + AAAVNL GEKPADVY++IA RV IM++D+
Sbjct: 658 AAVSHIPIHQDGSCNGLQHYAALGRDQIGAAAVNLFTGEKPADVYADIAARVLNIMRQDA 717
Query: 763 NKDPSKHPQALLAKILIDQVDRKLVKQTVMTSVYGVTFVGAREQIKRRLEEKGHITDDRQ 822
+DP P A AK+++DQVDRKLVKQTVMTSVYGVT+ GAR+QIK+RL+E+G DD Q
Sbjct: 718 EEDPETFPNATYAKLMLDQVDRKLVKQTVMTSVYGVTYSGARDQIKKRLKERGAFADDSQ 777
Query: 823 LFAAACYAAKVTLTALGEIFEAARSIMGWLGDCAKVIASENQPVRWTTPLGLPVVQPYCK 882
F A+CYAA+VTL AL E+FEAAR+IM W G+CAK+IAS+N+ V WTTPLGLPVVQPY K
Sbjct: 778 NFHASCYAARVTLKALEEMFEAARAIMSWFGECAKIIASQNKAVCWTTPLGLPVVQPYRK 837
Query: 883 NERHLIRTSLQVLALQREGNLVKIRKQRTAFPPNFVHSLDGSHMMMTAVACRDAGLHFAG 942
NERHL+ RKQ TAF PNFVHSLDGSHMMMTAVAC AGL FAG
Sbjct: 838 NERHLVMA----------------RKQMTAFAPNFVHSLDGSHMMMTAVACNKAGLSFAG 881
Query: 943 L 943
+
Sbjct: 882 V 882
>gi|449493526|ref|XP_004159332.1| PREDICTED: DNA-directed RNA polymerase 2,
chloroplastic/mitochondrial-like, partial [Cucumis
sativus]
Length = 764
Score = 956 bits (2471), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 448/705 (63%), Positives = 564/705 (80%), Gaps = 12/705 (1%)
Query: 241 KKQKAAYAPHIELLPADKVAVIVMHKMMGLVMAGHEDR-CVQVVQAAVHIGMAIEQEIRI 299
K+ ++A + LLPAD +AVI MHK+MGL+M+ E V+V QAA IG AIE E+RI
Sbjct: 1 KRSSPSHALYFHLLPADMMAVITMHKLMGLLMSDIEGGGSVRVTQAASGIGEAIENEVRI 60
Query: 300 HSFLEKTKNYKRKKIIADTEEVLSKEKELLRKRVNSLIKSKRVMEAQKLLKN-EETKPWG 358
+F EKTK E L++ + LRK++ L+K +++ + ++KN +++KPWG
Sbjct: 61 RNFFEKTKK---------QPEQLAEGHDKLRKKLTKLMKQQKLQKVNFIVKNHDDSKPWG 111
Query: 359 RDTQAKLGSRLVELLIETAYVQHPVNPADYSPPDVRPAFRHRFKTILKHPGQKTTKRYGV 418
D K+G RL++LLIETAY+Q PV+ +PPD+RPAF H KT LK Q+ KRYGV
Sbjct: 112 TDAHVKVGCRLIQLLIETAYIQPPVDQIGDAPPDLRPAFVHSLKTSLKE-SQRLGKRYGV 170
Query: 419 VECDPLVLEGLDRSAKHMLIPYVPMLVPPKKWKGYNKGGYLFLPSYVMRTHGSRKQQEAL 478
+ECDPLV G+ ++A HM+IPY+PMLVPP+KW GY++G + FLPSYVMR G+R+Q+EA+
Sbjct: 171 IECDPLVYRGMVKTAGHMIIPYMPMLVPPRKWTGYDQGAHFFLPSYVMRIRGARQQREAV 230
Query: 479 KSVTGNCMKKVFEALDTLGSTKWRVNKQVLSVLESIWVSGGNIAGLVDRNDVLIPEKPLS 538
K + + VF+ALD LGSTKWRVNK+VLSV+E IW SGG +A LVDR D+ +PE+P+
Sbjct: 231 KRASKKQLGPVFKALDILGSTKWRVNKRVLSVIEKIWASGGRLADLVDREDMPLPEQPMV 290
Query: 539 EDMTEVQKWKWSVRKAKKINQERHSQRCDTELKLSVARRMKDEEGFYYPHNLDFRGRAYP 598
ED E++ WKW V+ K+ N ERHSQRCDTELKL+VAR+MK+EEGFYYPHNLDFRGRAYP
Sbjct: 291 EDEAEIRNWKWKVKAVKRENSERHSQRCDTELKLAVARKMKEEEGFYYPHNLDFRGRAYP 350
Query: 599 MHPHLNHLSSDVCRGVLEFAEGRPLGKSGLRWLKIHLANLFSGGVEKLSHDGRLAFVENH 658
MHPHLNH+ SD CRG LEFAEGRPLG+SGLRWLKIHLANL++GGV+KLS+ R++F ENH
Sbjct: 351 MHPHLNHIGSDFCRGTLEFAEGRPLGESGLRWLKIHLANLYAGGVDKLSYKDRISFTENH 410
Query: 659 LYEIFDSAENPINGSRWWLTAEDPFQCLAACINLSEALKSSSPHSVISHLPIHQDGSCNG 718
L EIFDSA+ P+ GSRWWL AEDPFQCLA CI+LSEAL+S SP + ISH+P+HQDGSCNG
Sbjct: 411 LDEIFDSADRPLEGSRWWLGAEDPFQCLAVCIDLSEALRSPSPETTISHMPVHQDGSCNG 470
Query: 719 LQHYAALGRNTLEAAAVNLVAGEKPADVYSEIAVRVHEIMKRDSNKDPSKHPQALLAKIL 778
LQHYAALGR+ L A AVNL AG+KPADVYS IA RV +IM+ D+ KDP+ +P AL A++L
Sbjct: 471 LQHYAALGRDKLGAEAVNLAAGDKPADVYSGIASRVLDIMRSDAAKDPASNPNALHARLL 530
Query: 779 IDQVDRKLVKQTVMTSVYGVTFVGAREQIKRRLEEKGHITDDRQLFAAACYAAKVTLTAL 838
I+QVDRKLVKQTVMTSVYGVT+ GA++QI++RL+E+ I ++R LF A+CYAAK TLTA+
Sbjct: 531 INQVDRKLVKQTVMTSVYGVTYAGAKDQIRQRLKERSSIENERHLFTASCYAAKTTLTAI 590
Query: 839 GEIFEAARSIMGWLGDCAKVIASENQPVRWTTPLGLPVVQPYCKNERHLIRTSLQVLALQ 898
GE+FEAA+SIM WLG+CAKVIASENQ VRWTTPLGLPVVQPY K RHL++TSLQ+L+LQ
Sbjct: 591 GEMFEAAKSIMNWLGECAKVIASENQAVRWTTPLGLPVVQPYRKLGRHLVKTSLQMLSLQ 650
Query: 899 REGNLVKIRKQRTAFPPNFVHSLDGSHMMMTAVACRDAGLHFAGL 943
RE + V +QRTAFPPN++HSLD SHMMMTA+AC+ AGL+FAG+
Sbjct: 651 RETDKVMAMRQRTAFPPNYIHSLDSSHMMMTALACKRAGLNFAGV 695
>gi|21425669|emb|CAC95022.1| mitochondrial RNA polymerase [Nicotiana tabacum]
Length = 715
Score = 927 bits (2395), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 436/650 (67%), Positives = 542/650 (83%), Gaps = 9/650 (1%)
Query: 298 RIHSFLEKTKNYKRKKIIADTEEV---LSKEKELLRKRVNSLIKSKRVMEAQKLLKNEET 354
RIH FLEKTK K + D EE + KE+E LRK+V L+K +++ + +K++K ++
Sbjct: 2 RIHRFLEKTK--KSNALSGDLEETPGDMMKERERLRKKVKILMKKQKLRQVRKIVKQQDD 59
Query: 355 -KPWGRDTQAKLGSRLVELLIETAYVQHPVNPADYSPPDVRPAFRHRFKTILKHPGQKTT 413
KPWG+D K+G RL+++L+ETAY+Q P + D PPD+RPAF H KT+ K +
Sbjct: 60 EKPWGQDNLVKVGCRLIQILMETAYIQPPNDQLDDGPPDIRPAFVHTLKTV---ETMKGS 116
Query: 414 KRYGVVECDPLVLEGLDRSAKHMLIPYVPMLVPPKKWKGYNKGGYLFLPSYVMRTHGSRK 473
+RYGV++CDPLV +GLD++A+HM+IPY+PMLVPP+ W GY+KGGYLFLPSY+MRTHG+++
Sbjct: 117 RRYGVIQCDPLVRKGLDKTARHMVIPYMPMLVPPQSWLGYDKGGYLFLPSYIMRTHGAKQ 176
Query: 474 QQEALKSVTGNCMKKVFEALDTLGSTKWRVNKQVLSVLESIWVSGGNIAGLVDRNDVLIP 533
Q+EA+K V ++ VF+ALDTLG+TKWRVN++VL +++ IW SGG +A LVDR DV +P
Sbjct: 177 QREAVKRVPKKQLEPVFQALDTLGNTKWRVNRKVLGIVDRIWASGGRLADLVDREDVPLP 236
Query: 534 EKPLSEDMTEVQKWKWSVRKAKKINQERHSQRCDTELKLSVARRMKDEEGFYYPHNLDFR 593
E P +ED E++KWKW V+ KK N ERHSQRCD ELKL+VAR+MKDE+GFYYPHNLDFR
Sbjct: 237 EAPDTEDEAEIRKWKWKVKGVKKENCERHSQRCDIELKLAVARKMKDEDGFYYPHNLDFR 296
Query: 594 GRAYPMHPHLNHLSSDVCRGVLEFAEGRPLGKSGLRWLKIHLANLFSGGVEKLSHDGRLA 653
GRAYPMHP+LNHL SD+CRG+LEFAEGRPLG SGLRWLKIHLAN++ GGV+KLS++GR+A
Sbjct: 297 GRAYPMHPYLNHLGSDLCRGILEFAEGRPLGTSGLRWLKIHLANVYGGGVDKLSYEGRVA 356
Query: 654 FVENHLYEIFDSAENPINGSRWWLTAEDPFQCLAACINLSEALKSSSPHSVISHLPIHQD 713
F ENHL +IFDSAE P+ G RWWL AEDPFQCLA CIN++EAL+S SP + IS++PIHQD
Sbjct: 357 FSENHLEDIFDSAERPLEGKRWWLGAEDPFQCLATCINIAEALRSPSPETAISYMPIHQD 416
Query: 714 GSCNGLQHYAALGRNTLEAAAVNLVAGEKPADVYSEIAVRVHEIMKRDSNKDPSKHPQAL 773
GSCNGLQHYAALGR+ L AAAVNLVAG+KPADVYS IA RV +IMKRD+ KDP+ P +
Sbjct: 417 GSCNGLQHYAALGRDKLGAAAVNLVAGDKPADVYSGIAARVLDIMKRDAAKDPANDPNVM 476
Query: 774 LAKILIDQVDRKLVKQTVMTSVYGVTFVGAREQIKRRLEEKGHITDDRQLFAAACYAAKV 833
A++LI+QVDRKLVKQTVMTSVYGVT++GAR+QIK+RL+E+G I DD +LFAAACYAAK
Sbjct: 477 RARLLINQVDRKLVKQTVMTSVYGVTYIGARDQIKKRLKERGVIEDDNELFAAACYAAKT 536
Query: 834 TLTALGEIFEAARSIMGWLGDCAKVIASENQPVRWTTPLGLPVVQPYCKNERHLIRTSLQ 893
TLTALGE+FEAARSIM WLGDCAK+IA EN PVRWTTPLGLPVVQPY K RHLI+TSLQ
Sbjct: 537 TLTALGEMFEAARSIMSWLGDCAKIIAMENHPVRWTTPLGLPVVQPYRKLGRHLIKTSLQ 596
Query: 894 VLALQREGNLVKIRKQRTAFPPNFVHSLDGSHMMMTAVACRDAGLHFAGL 943
+L LQRE + V +++QRTAFPPNFVHSLDGSHMMMTA+AC+++GL FAG+
Sbjct: 597 ILTLQRETDKVMVKRQRTAFPPNFVHSLDGSHMMMTAIACKESGLSFAGV 646
>gi|357516849|ref|XP_003628713.1| DNA-directed RNA polymerase [Medicago truncatula]
gi|355522735|gb|AET03189.1| DNA-directed RNA polymerase [Medicago truncatula]
Length = 727
Score = 885 bits (2288), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 417/636 (65%), Positives = 528/636 (83%), Gaps = 3/636 (0%)
Query: 310 KRKKIIADTEEVLSKEKELLRKRVNSLIKSKRVMEAQKLLKN-EETKPWGRDTQAKLGSR 368
K + + A+ E L+KE++ LR +V SLIK ++ +A ++K ++ KPWG++ Q K+GSR
Sbjct: 24 KGENLTAEENEKLAKEEKRLRNKVASLIKKQKKQQALGIVKGRDQAKPWGQEAQVKVGSR 83
Query: 369 LVELLIETAYVQHPVNPADYSPPDVRPAFRHRFKTILKHPGQKTTKRYGVVECDPLVLEG 428
L++LLIETAY++ P N PD+ PAF+H KTI + ++RYGV+ECDP++ +G
Sbjct: 84 LIQLLIETAYLEPPANKFGDGGPDIFPAFKHTLKTI-SNDSNNGSRRYGVIECDPMIQKG 142
Query: 429 LDRSAKHMLIPYVPMLVPPKKWKGYNKGGYLFLPSYVMRTHGSRKQQEALKSVTGNCMKK 488
L+++A++M+IPY+PMLVPP W GY+KG YLFLPSYVMR HG+++Q++ALK N +
Sbjct: 143 LEKTARNMVIPYMPMLVPPNNWIGYDKGAYLFLPSYVMRIHGAKQQRDALKWAPKNQLDS 202
Query: 489 VFEALDTLGSTKWRVNKQVLSVLESIWVSGGNIAGLVDRNDVLIPEKPLSEDMTEVQKWK 548
+FEAL+TLG+TKWRVNK VL V++ IW +GG +A LVDR+D+ +PE+ +ED +E++KWK
Sbjct: 203 IFEALNTLGNTKWRVNKSVLGVIDQIWANGGRVADLVDRDDLPLPEELDTEDESEIRKWK 262
Query: 549 WSVRKAKKINQERHSQRCDTELKLSVARRMKDEEGFYYPHNLDFRGRAYPMHPHLNHLSS 608
W V+ KK N ERHSQRCD ELKL+VAR++K+E+GFYYPHNLDFRGRAYPMHP+LNHL S
Sbjct: 263 WKVKNVKKENNERHSQRCDIELKLAVARKLKEEDGFYYPHNLDFRGRAYPMHPYLNHLGS 322
Query: 609 DVCRGVLEFAEGRPLGKSGLRWLKIHLANLF-SGGVEKLSHDGRLAFVENHLYEIFDSAE 667
D+CRG+LEFAEGRPLGK GL+WLKIHLANL+ +GGV+KLS+DGR+AF E+HL +IFDSA+
Sbjct: 323 DLCRGILEFAEGRPLGKKGLQWLKIHLANLYATGGVDKLSYDGRVAFTEDHLDDIFDSAD 382
Query: 668 NPINGSRWWLTAEDPFQCLAACINLSEALKSSSPHSVISHLPIHQDGSCNGLQHYAALGR 727
P+ G RWWL AEDPFQCLAACINLSEAL+S +P + +SH+P+HQDGSCNGLQHYAALGR
Sbjct: 383 RPLEGKRWWLQAEDPFQCLAACINLSEALRSPNPEATLSHMPVHQDGSCNGLQHYAALGR 442
Query: 728 NTLEAAAVNLVAGEKPADVYSEIAVRVHEIMKRDSNKDPSKHPQALLAKILIDQVDRKLV 787
+ L A+AVNLV G+KPADVYS IA RV +IMKRD+ KDP+ P AL A+ LI+QVDRKLV
Sbjct: 443 DKLGASAVNLVGGDKPADVYSGIAARVLQIMKRDALKDPATDPHALHARRLINQVDRKLV 502
Query: 788 KQTVMTSVYGVTFVGAREQIKRRLEEKGHITDDRQLFAAACYAAKVTLTALGEIFEAARS 847
KQTVMTSVYGVT++GAR+QIKRRL+E+ + DD +LFAA+CYAAK TLTAL E+FEAARS
Sbjct: 503 KQTVMTSVYGVTYIGARDQIKRRLKERCAVEDDSELFAASCYAAKTTLTALEEMFEAARS 562
Query: 848 IMGWLGDCAKVIASENQPVRWTTPLGLPVVQPYCKNERHLIRTSLQVLALQREGNLVKIR 907
IMGWLGDCAKVIA NQ VRW TPLGLPVVQPY + RHLI+TSLQVL LQRE + V ++
Sbjct: 563 IMGWLGDCAKVIACTNQAVRWVTPLGLPVVQPYREVGRHLIKTSLQVLTLQRETDKVMVK 622
Query: 908 KQRTAFPPNFVHSLDGSHMMMTAVACRDAGLHFAGL 943
+QRTAFPPNFVHSLDGSHMMMTAVAC+ AG++FAG+
Sbjct: 623 RQRTAFPPNFVHSLDGSHMMMTAVACKQAGMNFAGV 658
>gi|18077581|emb|CAC95163.1| RNA polymerase [Physcomitrella patens]
Length = 1087
Score = 868 bits (2242), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 417/790 (52%), Positives = 556/790 (70%), Gaps = 24/790 (3%)
Query: 178 LRRRQVKQETEAWERMVDEYKELEAKMIEKRLAPNLPHIKGLFLGWFGPLSEAIEREQK- 236
LR RQ K ETEAW + EYKEL A+M +K LAPNLP + L LGWF PL +AI +EQK
Sbjct: 229 LRMRQFKIETEAWHQAAAEYKELVAEMCKKNLAPNLPATRSLLLGWFEPLRDAIAQEQKD 288
Query: 237 --MQRTKKQKAAYAPHIELLPADKVAVIVMHKMMGLVMAGHEDRCVQVVQAAVHIGMAIE 294
+ ++ +A Y P + LPAD +AVI MH++M L+M+ E CV+VV AA+ IG A+E
Sbjct: 289 YEERNFREHRAIYGPFLAKLPADMLAVITMHRLMSLLMSDQEHGCVKVVHAALQIGEAVE 348
Query: 295 QEIRIHSFLEKTKNYKRKKIIADTEEVLSKEKELLRKRV-NSLIKSKRVMEAQK------ 347
QE+ I+ L + +K + + L + NS++ S ++ K
Sbjct: 349 QEVGIYKLLRSKRKVAKKVKNKVSGDALDDLDTNTDDSIANSVLDSDLKLKLAKEKVKKL 408
Query: 348 ------------LLKNEETKPWGRDTQAKLGSRLVELLIETAYVQHPVNPADYSPPDVRP 395
+ + +PWG Q K+GSRL+EL++ET+ ++ P + ++RP
Sbjct: 409 VKQQKLRLVGKVVQQANGDEPWGPAIQVKVGSRLLELMLETSVMRSPADQNAQDMTELRP 468
Query: 396 AFRHRFKTILKHPGQKTTKRYGVVECDPLVLEGLDRSAKHMLIPYVPMLVPPKKWKGYNK 455
AF+H + + YGV+ECDP V+ LD+S +HM++PY+PMLV P+ W G+
Sbjct: 469 AFKHTLRNYPIKNKNNMNRIYGVIECDPAVMSALDKSVQHMVMPYMPMLVKPRAWTGFYD 528
Query: 456 GGYLFLPSYVMRTHGSRKQQEALKSVTGNCMKKVFEALDTLGSTKWRVNKQVLSVLESIW 515
GGYL L S +MRTHG+++ ++ + S M K+ +ALD LGST+W++N VL VLE +W
Sbjct: 529 GGYLHLKSTIMRTHGAKELRDTIISTLRQDMIKIVQALDALGSTQWKINNVVLDVLEQVW 588
Query: 516 VSGGNIAGLVDRNDVLIPEKPLSEDMTEVQKWKWSVRKAKKINQERHSQRCDTELKLSVA 575
GG +A LVD DV +P+KP S+D E++ W+ AK+ N ERHS RCDTELKL+ A
Sbjct: 589 KDGGRLADLVDAEDVPLPDKPESDDFEEIRNWRRHTASAKRTNSERHSVRCDTELKLAAA 648
Query: 576 RRMKDEEGFYYPHNLDFRGRAYPMHPHLNHLSSDVCRGVLEFAEGRPLGKSGLRWLKIHL 635
R+++DEEGF+YPHNLDFRGRAYP+HPHLNHL SD+CRG+L+FAEGR LG +GLRWLKIHL
Sbjct: 649 RKLRDEEGFFYPHNLDFRGRAYPIHPHLNHLGSDMCRGILQFAEGRALGPTGLRWLKIHL 708
Query: 636 ANLFSGGVEKLSHDGRLAFVENHLYEIFDSAENPINGSRWWLTAEDPFQCLAACINLSEA 695
ANL+ G V K+S D R+A+V+ + ++FDSA+ P++GSRWWL AEDPFQ LA C+++ A
Sbjct: 709 ANLYGGKVGKMSFDARVAWVDEVMEKVFDSADRPLDGSRWWLDAEDPFQFLATCLDIRNA 768
Query: 696 LKSSSPHSVISHLPIHQDGSCNGLQHYAALGRNTLEAAAVNLVAGEKPADVYSEIAVRVH 755
+KS +P + +SHLP+HQDGSCNGLQHYAALGR+ + A +VNLVAG+KPADVYS IA RV
Sbjct: 769 IKSGNPETYVSHLPVHQDGSCNGLQHYAALGRDRIGAESVNLVAGDKPADVYSGIAARVR 828
Query: 756 EIMKRDSNKDPSKHPQALLAKILIDQVDRKLVKQTVMTSVYGVTFVGAREQIKRRLEEKG 815
EIM+RD+ KDP A AK+L+ ++DRKLVKQTVMTSVYGVTFVGAR QI RL+E+G
Sbjct: 829 EIMERDAQKDPKTSRHAANAKLLLPEIDRKLVKQTVMTSVYGVTFVGARMQIFNRLKERG 888
Query: 816 HITDDRQLFAAACYAAKVTLTALGEIFEAARSIMGWLGDCAKVIASENQPVRWTTPLGLP 875
I + +++ AACYAAK TL ALGE+F+ AR IM WLGDCAK+IAS + V+WTTPLGLP
Sbjct: 889 TIQEQTEMYRAACYAAKTTLNALGEMFKEARCIMSWLGDCAKIIASNGETVKWTTPLGLP 948
Query: 876 VVQPYCKNERHLIRTSLQVLALQR--EGNLVKIRKQRTAFPPNFVHSLDGSHMMMTAVAC 933
VVQPY K RHL++TSLQVLAL+ V +++Q++AFPPNFVHSLD +HMMMTA+AC
Sbjct: 949 VVQPYRKPGRHLVKTSLQVLALRNLDADQPVLVQRQKSAFPPNFVHSLDSTHMMMTALAC 1008
Query: 934 RDAGLHFAGL 943
++AGL FAG+
Sbjct: 1009 QEAGLTFAGV 1018
>gi|18642493|dbj|BAB84519.2| single-subunit RNA polymerase [Physcomitrella patens]
Length = 1087
Score = 867 bits (2241), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 417/790 (52%), Positives = 556/790 (70%), Gaps = 24/790 (3%)
Query: 178 LRRRQVKQETEAWERMVDEYKELEAKMIEKRLAPNLPHIKGLFLGWFGPLSEAIEREQK- 236
LR RQ K ETEAW + EYKEL A+M +K LAPNLP + L LGWF PL +AI +EQK
Sbjct: 229 LRMRQFKIETEAWHQAAAEYKELVAEMCKKNLAPNLPATRSLLLGWFEPLRDAIAQEQKD 288
Query: 237 --MQRTKKQKAAYAPHIELLPADKVAVIVMHKMMGLVMAGHEDRCVQVVQAAVHIGMAIE 294
+ ++ +A Y P + LPAD +AVI MH++M L+M+ E CV+VV AA+ IG A+E
Sbjct: 289 YEERNFREHRAIYGPFLAKLPADMLAVITMHRLMSLLMSDQEHGCVKVVHAALQIGEAVE 348
Query: 295 QEIRIHSFLEKTKNYKRKKIIADTEEVLSKEKELLRKRV-NSLIKSKRVMEAQK------ 347
QE+ I+ L + +K + + L + NS++ S ++ K
Sbjct: 349 QEVGIYKLLRSKRKVAKKVKNKVSGDALDDLDTNTDDSIANSVLDSDLKLKLAKEKVKKL 408
Query: 348 ------------LLKNEETKPWGRDTQAKLGSRLVELLIETAYVQHPVNPADYSPPDVRP 395
+ + +PWG Q K+GSRL+EL++ET+ ++ P + ++RP
Sbjct: 409 VKQQKLRLVGKVVQQANGDEPWGPAIQVKVGSRLLELMLETSVMRSPADQNAQDMTELRP 468
Query: 396 AFRHRFKTILKHPGQKTTKRYGVVECDPLVLEGLDRSAKHMLIPYVPMLVPPKKWKGYNK 455
AF+H + + YGV+ECDP V+ LD+S +HM++PY+PMLV P+ W G+
Sbjct: 469 AFKHTLRNYPIKNKNNMNRIYGVIECDPAVMSALDKSVQHMVMPYMPMLVKPRAWTGFYD 528
Query: 456 GGYLFLPSYVMRTHGSRKQQEALKSVTGNCMKKVFEALDTLGSTKWRVNKQVLSVLESIW 515
GGYL L S +MRTHG+++ ++ + S M K+ +ALD LGST+W++N VL VLE +W
Sbjct: 529 GGYLHLKSTIMRTHGAKELRDTIISTLRQDMIKIVQALDALGSTQWKINNVVLDVLEQMW 588
Query: 516 VSGGNIAGLVDRNDVLIPEKPLSEDMTEVQKWKWSVRKAKKINQERHSQRCDTELKLSVA 575
GG +A LVD DV +P+KP S+D E++ W+ AK+ N ERHS RCDTELKL+ A
Sbjct: 589 KDGGRLADLVDAEDVPLPDKPESDDFEEIRNWRRHTASAKRTNSERHSVRCDTELKLAAA 648
Query: 576 RRMKDEEGFYYPHNLDFRGRAYPMHPHLNHLSSDVCRGVLEFAEGRPLGKSGLRWLKIHL 635
R+++DEEGF+YPHNLDFRGRAYP+HPHLNHL SD+CRG+L+FAEGR LG +GLRWLKIHL
Sbjct: 649 RKLRDEEGFFYPHNLDFRGRAYPIHPHLNHLGSDMCRGILQFAEGRALGPTGLRWLKIHL 708
Query: 636 ANLFSGGVEKLSHDGRLAFVENHLYEIFDSAENPINGSRWWLTAEDPFQCLAACINLSEA 695
ANL+ G V K+S D R+A+V+ + ++FDSA+ P++GSRWWL AEDPFQ LA C+++ A
Sbjct: 709 ANLYGGKVGKMSFDARVAWVDEVMEKVFDSADRPLDGSRWWLDAEDPFQFLATCLDIRNA 768
Query: 696 LKSSSPHSVISHLPIHQDGSCNGLQHYAALGRNTLEAAAVNLVAGEKPADVYSEIAVRVH 755
+KS +P + +SHLP+HQDGSCNGLQHYAALGR+ + A +VNLVAG+KPADVYS IA RV
Sbjct: 769 IKSGNPETYVSHLPVHQDGSCNGLQHYAALGRDRIGAESVNLVAGDKPADVYSGIAARVR 828
Query: 756 EIMKRDSNKDPSKHPQALLAKILIDQVDRKLVKQTVMTSVYGVTFVGAREQIKRRLEEKG 815
EIM+RD+ KDP A AK+L+ ++DRKLVKQTVMTSVYGVTFVGAR QI RL+E+G
Sbjct: 829 EIMERDAQKDPKTSRHAANAKLLLPEIDRKLVKQTVMTSVYGVTFVGARMQIFNRLKERG 888
Query: 816 HITDDRQLFAAACYAAKVTLTALGEIFEAARSIMGWLGDCAKVIASENQPVRWTTPLGLP 875
I + +++ AACYAAK TL ALGE+F+ AR IM WLGDCAK+IAS + V+WTTPLGLP
Sbjct: 889 TIQEQTEMYRAACYAAKTTLNALGEMFKEARCIMSWLGDCAKIIASNGETVKWTTPLGLP 948
Query: 876 VVQPYCKNERHLIRTSLQVLALQR--EGNLVKIRKQRTAFPPNFVHSLDGSHMMMTAVAC 933
VVQPY K RHL++TSLQVLAL+ V +++Q++AFPPNFVHSLD +HMMMTA+AC
Sbjct: 949 VVQPYRKPGRHLVKTSLQVLALRNLDADQPVLVQRQKSAFPPNFVHSLDSTHMMMTALAC 1008
Query: 934 RDAGLHFAGL 943
++AGL FAG+
Sbjct: 1009 QEAGLTFAGV 1018
>gi|168053868|ref|XP_001779356.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162669272|gb|EDQ55863.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 1088
Score = 864 bits (2232), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 418/791 (52%), Positives = 557/791 (70%), Gaps = 25/791 (3%)
Query: 178 LRRRQVKQETEAWERMVDEYKELEAKMIEKRLAPNLPHIKGLFLGWFGPLSEAIEREQK- 236
LR RQ K ETEAW + EYKEL A+M +K LAPNLP + L LGWF PL +AI +EQK
Sbjct: 229 LRMRQFKIETEAWHQAAAEYKELVAEMCKKNLAPNLPATRSLLLGWFEPLRDAIAQEQKD 288
Query: 237 --MQRTKKQKAAYAPHIELLPADKVAVIVMHKMMGLVMAGHEDRCVQVVQAAVHIGMAIE 294
+ ++ +A Y P + LPAD +AVI MH++M L+M+ E CV+VV AA+ IG A+E
Sbjct: 289 YEERNFREHRAIYGPFLAKLPADMLAVITMHRLMSLLMSDQEHGCVKVVHAALQIGEAVE 348
Query: 295 QEIRIHSFLEKTKNYKRKKIIADTEEVLSKEKELLRKRV-NSLIKSKRVMEAQK------ 347
QE+ I+ L + +K + + L + NS++ S ++ K
Sbjct: 349 QEVGIYKLLRSKRKVAKKVKNKVSGDALDDLDTNTDDSIANSVLDSDLKLKLAKEKVKKL 408
Query: 348 ------------LLKNEETKPWGRDTQAKLGSRLVELLIETAYVQHPVNPADYSPPDVRP 395
+ + +PWG Q K+GSRL+EL++ET+ ++ P + ++RP
Sbjct: 409 VKQQKLRLVGKVVQQANGDEPWGPAIQVKVGSRLLELMLETSVMRSPADQNAQDMTELRP 468
Query: 396 AFRHRFKTILKHPGQKTTKRYGVVECDPLVLEGLDRSAKHMLIPYVPMLVPPKKWKGYNK 455
AF+H + + YGV+ECDP V+ LD+S +HM++PY+PMLV P+ W G+
Sbjct: 469 AFKHTLRNYPIKNKNNMNRIYGVIECDPAVMSALDKSVQHMVMPYMPMLVKPRAWTGFYD 528
Query: 456 GGYLFLPSYVMRTHGSRKQQEALKSVTGNCMKKVFEALDTLGSTKWRVNKQVLSVLESIW 515
GGYL L S +MRTHG+++ ++ + S M K+ +ALD LGST+W++N VL VLE +W
Sbjct: 529 GGYLHLKSTIMRTHGAKELRDTIISTLRQDMIKIVQALDALGSTQWKINNVVLDVLEQMW 588
Query: 516 VSGGNIAGLVDRNDVLIPEKPLSEDMTEVQKWKWSVRKAKKINQERHSQRCDTELKLSVA 575
GG +A LVD DV +P+KP S+D E++ W+ AK+ N ERHS RCDTELKL+ A
Sbjct: 589 KDGGRLADLVDAEDVPLPDKPESDDFEEIRNWRRHTASAKRTNSERHSVRCDTELKLAAA 648
Query: 576 RRMKDEEGFYYPHNLDFRGRAYPMHPHLNHLSSDVCRGVLEFAEGRPLGKSGLRWLKIHL 635
R+++DEEGF+YPHNLDFRGRAYP+HPHLNHL SD+CRG+L+FAEGR LG +GLRWLKIHL
Sbjct: 649 RKLRDEEGFFYPHNLDFRGRAYPIHPHLNHLGSDMCRGILQFAEGRALGPTGLRWLKIHL 708
Query: 636 ANLFSGGVEKLSHDGRLAFVENHLYEIFDSAENPINGSRWWLTAEDPFQCLAACINLSEA 695
ANL+ G V K+S D R+A+V+ + ++FDSA+ P++GSRWWL AEDPFQ LA C+++ A
Sbjct: 709 ANLYGGKVGKMSFDARVAWVDEVMEKVFDSADRPLDGSRWWLDAEDPFQFLATCLDIRNA 768
Query: 696 LKSSSPHSVISHLPIHQDGSCNGLQHYAALGRNTLEAAAVNLVAGEKPADVYSEIAVRVH 755
+KS +P + +SHLP+HQDGSCNGLQHYAALGR+ + A +VNLVAG+KPADVYS IA RV
Sbjct: 769 IKSGNPETYVSHLPVHQDGSCNGLQHYAALGRDRIGAESVNLVAGDKPADVYSGIAARVR 828
Query: 756 EIMKRDSNKDPSKHPQALLAKILIDQVDRKLVKQTVMTSVYGVTFVGAREQIKRRLEEKG 815
EIM+RD+ KDP A AK+L+ ++DRKLVKQTVMTSVYGVTFVGAR QI RL+E+G
Sbjct: 829 EIMERDAQKDPKTSRHAANAKLLLPEIDRKLVKQTVMTSVYGVTFVGARMQIFNRLKERG 888
Query: 816 HITDDRQLFAAACYAAKV-TLTALGEIFEAARSIMGWLGDCAKVIASENQPVRWTTPLGL 874
I + +++ AACYAAKV TL ALGE+F+ AR IM WLGDCAK+IAS + V+WTTPLGL
Sbjct: 889 TIQEQTEMYRAACYAAKVTTLNALGEMFKEARCIMSWLGDCAKIIASNGETVKWTTPLGL 948
Query: 875 PVVQPYCKNERHLIRTSLQVLALQR--EGNLVKIRKQRTAFPPNFVHSLDGSHMMMTAVA 932
PVVQPY K RHL++TSLQVLAL+ V +++Q++AFPPNFVHSLD +HMMMTA+A
Sbjct: 949 PVVQPYRKPGRHLVKTSLQVLALRNLDADQPVLVQRQKSAFPPNFVHSLDSTHMMMTALA 1008
Query: 933 CRDAGLHFAGL 943
C++AGL FAG+
Sbjct: 1009 CQEAGLTFAGV 1019
>gi|18642494|dbj|BAB84520.2| single-subunit RNA polymerase [Physcomitrella patens]
Length = 1065
Score = 858 bits (2216), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 433/794 (54%), Positives = 564/794 (71%), Gaps = 24/794 (3%)
Query: 171 KKRKFNLLRRRQVKQETEAWERMVDEYKELEAKMIEKRLAPNLPHIKGLFLGWFGPLSEA 230
+KRK L +RQVK ETEAW++ EY+EL +M K LAPNLP + L L WF PL +
Sbjct: 206 RKRKARELHKRQVKIETEAWQQAATEYRELMTEMCRKSLAPNLPFAQSLLLSWFEPLRDG 265
Query: 231 IEREQKM---QRTKKQKAAYAPHIELLPADKVAVIVMHKMMGLVMAGHEDRCVQVVQAAV 287
I EQ+ + ++ ++ Y P++ LPAD +AVI MH++MGL+M E CV+V+ AAV
Sbjct: 266 ILEEQRAYGNREHREHRSMYGPYMCQLPADMLAVITMHRLMGLLMCDQEHGCVKVIHAAV 325
Query: 288 HIGMAIEQEIRIHSFLEKTKNYKRKK-------IIADTEEVLSKEKELLRKRVNSLIKSK 340
IG A+EQE+RI + K K + +A+ EE+ + K L+ + K K
Sbjct: 326 VIGEAVEQEVRIFQLMNSQKKSKDAEGNTNSLGDVANNEELEATRKADLKSKKVVRDKVK 385
Query: 341 RVMEAQKL------LKNEET-KPWGRDTQAKLGSRLVELLIETAYVQHPVNPADYSPPDV 393
++++ KL LK+ T +PW KLGSRL+EL++ET++V+ P ++
Sbjct: 386 KLVKQNKLRRVDSILKHASTDEPWSTVIHVKLGSRLLELMLETSFVRAPACQDGDDFGEL 445
Query: 394 RPAFRHRFKT-ILKHPGQKTTKRYGVVECDPLVLEGLDRSAKHMLIPYVPMLVPPKKWKG 452
RPAF+H+FK +L+ Q + YGV+ECD LVL +D+S KHM++PY+PMLV P WKG
Sbjct: 446 RPAFQHKFKNHVLR---QNVNRIYGVIECDQLVLAEIDQSVKHMVMPYMPMLVKPLPWKG 502
Query: 453 YNKGGYLFLPSYVMRTHGSRKQQEALKSVTGNCMKKVFEALDTLGSTKWRVNKQVLSVLE 512
+N+GGYL+L S +MRT G+++Q+ A+ MK V EAL+ LG T WRVNK+VL V+E
Sbjct: 503 FNEGGYLYLKSSIMRTQGAKEQRMAVIDTPRKHMKVVVEALNVLGETGWRVNKRVLEVVE 562
Query: 513 SIWVSGGNIAGLVDRNDVLIPEKPLSEDMTEVQKWKWSVRKAKKINQERHSQRCDTELKL 572
+W +GG IA LV+ +DV IPE+P + D KWK +V +AK+ N ERHS RCDTELKL
Sbjct: 563 KLWKAGGGIADLVEADDVPIPERPDTSDKEVWHKWKVAVSQAKRTNSERHSLRCDTELKL 622
Query: 573 SVARRMKDEEGFYYPHNLDFRGRAYPMHPHLNHLSSDVCRGVLEFAEGRPLGKSGLRWLK 632
VA+++ DEE FYYPHNLDFRGRAYPMHPHLNHL +D+CRG+L FA+G+PLG SGLRW+K
Sbjct: 623 GVAKKLIDEEAFYYPHNLDFRGRAYPMHPHLNHLGNDLCRGLLIFADGKPLGPSGLRWIK 682
Query: 633 IHLANLFSGGVEKLSHDGRLAFVENHLYEIFDSAENPINGSRWWLTAEDPFQCLAACINL 692
I LANL+ G V K+S D R AF E+ + EI DSAE P++GSR WL AEDPFQ LAACI+L
Sbjct: 683 IQLANLYGGSVGKMSFDDRAAFAEDRMEEILDSAERPLDGSRLWLKAEDPFQFLAACIDL 742
Query: 693 SEALKSSSPHSVISHLPIHQDGSCNGLQHYAALGRNTLEAAAVNLVAGEKPADVYSEIAV 752
+AL S +P + +SHLP+HQDGSCNGLQHYAALGR+ + A +VNL+AG+KPADVYS IA
Sbjct: 743 RDALASGNPETFVSHLPVHQDGSCNGLQHYAALGRDRIGAESVNLIAGDKPADVYSGIAE 802
Query: 753 RVHEIMKRDSNKDPSKHPQALLAKILIDQVDRKLVKQTVMTSVYGVTFVGAREQIKRRLE 812
RV IM++D+ K+P A A++L Q+DRKLVKQTVMTSVYGVTF+GAR QI RL+
Sbjct: 803 RVKIIMEKDALKNPLTSRNAASARLLQGQIDRKLVKQTVMTSVYGVTFIGARMQILNRLK 862
Query: 813 EKGHI-TDDRQLFAAACYAAKVTLTALGEIFEAARSIMGWLGDCAKVIASENQPVRWTTP 871
E+ I D + AACYAAKVTL ALGE+F+ AR IM WLGDCAK+IA+ VRWT+P
Sbjct: 863 ERSPIAVDPVDTYRAACYAAKVTLDALGEMFKEARCIMSWLGDCAKIIAAAGHTVRWTSP 922
Query: 872 LGLPVVQPYCKNERHLIRTSLQVLALQR--EGNLVKIRKQRTAFPPNFVHSLDGSHMMMT 929
LGLP+VQPY K+ RHL++TSLQVLAL+ + + V +QR+AFPPNFVHSLD SHMMMT
Sbjct: 923 LGLPIVQPYRKHSRHLVKTSLQVLALRNTDDNHPVLASRQRSAFPPNFVHSLDSSHMMMT 982
Query: 930 AVACRDAGLHFAGL 943
A+AC AGL FAG+
Sbjct: 983 ALACSKAGLTFAGV 996
>gi|168052876|ref|XP_001778865.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162669734|gb|EDQ56315.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 1065
Score = 857 bits (2213), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 433/794 (54%), Positives = 563/794 (70%), Gaps = 24/794 (3%)
Query: 171 KKRKFNLLRRRQVKQETEAWERMVDEYKELEAKMIEKRLAPNLPHIKGLFLGWFGPLSEA 230
+KRK L +RQVK ETEAW++ EY+EL +M K LAPNLP + L L WF PL +
Sbjct: 206 RKRKARELHKRQVKIETEAWQQAATEYRELMTEMCRKSLAPNLPFAQSLLLSWFEPLRDG 265
Query: 231 IEREQKM---QRTKKQKAAYAPHIELLPADKVAVIVMHKMMGLVMAGHEDRCVQVVQAAV 287
I EQ+ + ++ ++ Y P++ LPAD +AVI MH++MGL+M E CV+V+ AAV
Sbjct: 266 ILEEQRAYGNREHREHRSMYGPYMCQLPADMLAVITMHRLMGLLMCDQEHGCVKVIHAAV 325
Query: 288 HIGMAIEQEIRIHSFLEKTKNYKRKK-------IIADTEEVLSKEKELLRKRVNSLIKSK 340
IG A+EQE+RI + K K + +A+ EE+ + K L+ + K K
Sbjct: 326 VIGEAVEQEVRIFQLMNSQKKSKDAEGNTNSLGDVANNEELEATRKADLKSKKVVRDKVK 385
Query: 341 RVMEAQKL------LKNEET-KPWGRDTQAKLGSRLVELLIETAYVQHPVNPADYSPPDV 393
++++ KL LK+ T +PW KLGSRL+EL++ET++V+ P ++
Sbjct: 386 KLVKQNKLRRVDSILKHASTDEPWSTVIHVKLGSRLLELMLETSFVRAPACQDGDDFGEL 445
Query: 394 RPAFRHRFKT-ILKHPGQKTTKRYGVVECDPLVLEGLDRSAKHMLIPYVPMLVPPKKWKG 452
RPAF+H+FK +L+ Q + YGV+ECD LVL +D+S KHM++PY+PMLV P WKG
Sbjct: 446 RPAFQHKFKNHVLR---QNVNRIYGVIECDQLVLAEIDQSVKHMVMPYMPMLVKPLPWKG 502
Query: 453 YNKGGYLFLPSYVMRTHGSRKQQEALKSVTGNCMKKVFEALDTLGSTKWRVNKQVLSVLE 512
+N+GGYL+L S +MRT G+++Q+ A+ MK V EAL+ LG T WRVNK+VL V+E
Sbjct: 503 FNEGGYLYLKSSIMRTQGAKEQRMAVIDTPRKHMKVVVEALNVLGETGWRVNKRVLEVVE 562
Query: 513 SIWVSGGNIAGLVDRNDVLIPEKPLSEDMTEVQKWKWSVRKAKKINQERHSQRCDTELKL 572
+W +GG IA LV+ +DV IPE+P + D KWK +V +AK+ N ERHS RCDTELKL
Sbjct: 563 KLWKAGGGIADLVEADDVPIPERPDTSDKEVWHKWKVAVSQAKRTNSERHSLRCDTELKL 622
Query: 573 SVARRMKDEEGFYYPHNLDFRGRAYPMHPHLNHLSSDVCRGVLEFAEGRPLGKSGLRWLK 632
VA ++ DEE FYYPHNLDFRGRAYPMHPHLNHL +D+CRG+L FA+G+PLG SGLRW+K
Sbjct: 623 GVANKLIDEEAFYYPHNLDFRGRAYPMHPHLNHLGNDLCRGLLIFADGKPLGPSGLRWIK 682
Query: 633 IHLANLFSGGVEKLSHDGRLAFVENHLYEIFDSAENPINGSRWWLTAEDPFQCLAACINL 692
I LANL+ G V K+S D R AF E+ + EI DSAE P++GSR WL AEDPFQ LAACI+L
Sbjct: 683 IQLANLYGGSVGKMSFDDRAAFAEDRMEEILDSAERPLDGSRLWLKAEDPFQFLAACIDL 742
Query: 693 SEALKSSSPHSVISHLPIHQDGSCNGLQHYAALGRNTLEAAAVNLVAGEKPADVYSEIAV 752
+AL S +P + +SHLP+HQDGSCNGLQHYAALGR+ + A +VNL+AG+KPADVYS IA
Sbjct: 743 RDALASGNPETFVSHLPVHQDGSCNGLQHYAALGRDRIGAESVNLIAGDKPADVYSGIAE 802
Query: 753 RVHEIMKRDSNKDPSKHPQALLAKILIDQVDRKLVKQTVMTSVYGVTFVGAREQIKRRLE 812
RV IM++D+ K+P A A++L Q+DRKLVKQTVMTSVYGVTF+GAR QI RL+
Sbjct: 803 RVKIIMEKDALKNPLTSRNAASARLLQGQIDRKLVKQTVMTSVYGVTFIGARMQILNRLK 862
Query: 813 EKGHI-TDDRQLFAAACYAAKVTLTALGEIFEAARSIMGWLGDCAKVIASENQPVRWTTP 871
E+ I D + AACYAAKVTL ALGE+F+ AR IM WLGDCAK+IA+ VRWT+P
Sbjct: 863 ERSPIAVDPVDTYRAACYAAKVTLDALGEMFKEARCIMSWLGDCAKIIAAAGHTVRWTSP 922
Query: 872 LGLPVVQPYCKNERHLIRTSLQVLALQR--EGNLVKIRKQRTAFPPNFVHSLDGSHMMMT 929
LGLP+VQPY K+ RHL++TSLQVLAL+ + + V +QR+AFPPNFVHSLD SHMMMT
Sbjct: 923 LGLPIVQPYRKHSRHLVKTSLQVLALRNTDDNHPVLASRQRSAFPPNFVHSLDSSHMMMT 982
Query: 930 AVACRDAGLHFAGL 943
A+AC AGL FAG+
Sbjct: 983 ALACSKAGLTFAGV 996
>gi|18077583|emb|CAC95164.1| RNA polymerase [Physcomitrella patens]
Length = 1065
Score = 857 bits (2213), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 433/794 (54%), Positives = 563/794 (70%), Gaps = 24/794 (3%)
Query: 171 KKRKFNLLRRRQVKQETEAWERMVDEYKELEAKMIEKRLAPNLPHIKGLFLGWFGPLSEA 230
+KRK L +RQVK ETEAW++ EY+EL +M K LAPNLP + L L WF PL +
Sbjct: 206 RKRKARELHKRQVKIETEAWQQAATEYRELMTEMCRKSLAPNLPFAQSLLLSWFEPLRDG 265
Query: 231 IEREQKM---QRTKKQKAAYAPHIELLPADKVAVIVMHKMMGLVMAGHEDRCVQVVQAAV 287
I EQ+ + ++ ++ Y P++ LPAD +AVI MH++MGL+M E CV+V+ AAV
Sbjct: 266 ILEEQRAYGNREHREHRSMYGPYMCQLPADMLAVITMHRLMGLLMCDQEHGCVKVIHAAV 325
Query: 288 HIGMAIEQEIRIHSFLEKTKNYKRKK-------IIADTEEVLSKEKELLRKRVNSLIKSK 340
IG A+EQE+RI + K K + +A+ EE+ + K L+ + K K
Sbjct: 326 VIGEAVEQEVRIFQLMNSQKKSKDAEGNTNSLGDVANNEELEATRKADLKSKKVVRDKVK 385
Query: 341 RVMEAQKL------LKNEET-KPWGRDTQAKLGSRLVELLIETAYVQHPVNPADYSPPDV 393
++++ KL LK+ T +PW KLGSRL+EL++ET++V+ P ++
Sbjct: 386 KLVKQNKLRRVDSILKHASTDEPWSTVIHVKLGSRLLELMLETSFVRAPACQDGDDFGEL 445
Query: 394 RPAFRHRFKT-ILKHPGQKTTKRYGVVECDPLVLEGLDRSAKHMLIPYVPMLVPPKKWKG 452
RPAF+H+FK +L+ Q + YGV+ECD LVL +D+S KHM++PY+PMLV P WKG
Sbjct: 446 RPAFQHKFKNHVLR---QNVNRIYGVIECDQLVLAEIDQSVKHMVMPYMPMLVKPLPWKG 502
Query: 453 YNKGGYLFLPSYVMRTHGSRKQQEALKSVTGNCMKKVFEALDTLGSTKWRVNKQVLSVLE 512
+N+GGYL+L S +MRT G+++Q+ A+ MK V EAL+ LG T WRVNK+VL V+E
Sbjct: 503 FNEGGYLYLKSSIMRTQGAKEQRMAVIDTPRKHMKVVVEALNVLGETGWRVNKRVLEVVE 562
Query: 513 SIWVSGGNIAGLVDRNDVLIPEKPLSEDMTEVQKWKWSVRKAKKINQERHSQRCDTELKL 572
+W +GG IA LV+ +DV IPE+P + D KWK +V +AK+ N ERHS RCDTELKL
Sbjct: 563 KLWKAGGGIADLVEADDVPIPERPDTSDKEVWHKWKVAVSQAKRTNSERHSLRCDTELKL 622
Query: 573 SVARRMKDEEGFYYPHNLDFRGRAYPMHPHLNHLSSDVCRGVLEFAEGRPLGKSGLRWLK 632
VA ++ DEE FYYPHNLDFRGRAYPMHPHLNHL +D+CRG+L FA+G+PLG SGLRW+K
Sbjct: 623 GVADKLIDEEAFYYPHNLDFRGRAYPMHPHLNHLGNDLCRGLLIFADGKPLGPSGLRWIK 682
Query: 633 IHLANLFSGGVEKLSHDGRLAFVENHLYEIFDSAENPINGSRWWLTAEDPFQCLAACINL 692
I LANL+ G V K+S D R AF E+ + EI DSAE P++GSR WL AEDPFQ LAACI+L
Sbjct: 683 IQLANLYGGSVGKMSFDDRAAFAEDRMEEILDSAERPLDGSRLWLKAEDPFQFLAACIDL 742
Query: 693 SEALKSSSPHSVISHLPIHQDGSCNGLQHYAALGRNTLEAAAVNLVAGEKPADVYSEIAV 752
+AL S +P + +SHLP+HQDGSCNGLQHYAALGR+ + A +VNL+AG+KPADVYS IA
Sbjct: 743 RDALASGNPETFVSHLPVHQDGSCNGLQHYAALGRDRIGAESVNLIAGDKPADVYSGIAE 802
Query: 753 RVHEIMKRDSNKDPSKHPQALLAKILIDQVDRKLVKQTVMTSVYGVTFVGAREQIKRRLE 812
RV IM++D+ K+P A A++L Q+DRKLVKQTVMTSVYGVTF+GAR QI RL+
Sbjct: 803 RVEIIMEKDALKNPLTSRNAASARLLQGQIDRKLVKQTVMTSVYGVTFIGARMQILNRLK 862
Query: 813 EKGHI-TDDRQLFAAACYAAKVTLTALGEIFEAARSIMGWLGDCAKVIASENQPVRWTTP 871
E+ I D + AACYAAKVTL ALGE+F+ AR IM WLGDCAK+IA+ VRWT+P
Sbjct: 863 ERSPIAVDPVDTYRAACYAAKVTLDALGEMFKEARCIMSWLGDCAKIIAAAGHTVRWTSP 922
Query: 872 LGLPVVQPYCKNERHLIRTSLQVLALQR--EGNLVKIRKQRTAFPPNFVHSLDGSHMMMT 929
LGLP+VQPY K+ RHL++TSLQVLAL+ + + V +QR+AFPPNFVHSLD SHMMMT
Sbjct: 923 LGLPIVQPYRKHSRHLVKTSLQVLALRNTDDNHPVLASRQRSAFPPNFVHSLDSSHMMMT 982
Query: 930 AVACRDAGLHFAGL 943
A+AC AGL FAG+
Sbjct: 983 ALACSKAGLTFAGV 996
>gi|125562883|gb|EAZ08263.1| hypothetical protein OsI_30516 [Oryza sativa Indica Group]
Length = 845
Score = 828 bits (2139), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 389/586 (66%), Positives = 468/586 (79%), Gaps = 43/586 (7%)
Query: 358 GRDTQAKLGSRLVELLIETAYVQHPVNPADYSPPDVRPAFRHRFKTILKHPGQKTTKRYG 417
G + ++GSRL+EL+IETAY+Q P + + PPD+RPAF H +T+ +
Sbjct: 234 GEAIEHEVGSRLIELMIETAYIQPPASQSADGPPDIRPAFTHEMRTVARE---------- 283
Query: 418 VVECDPLVLEGLDRSAKHMLIPYVPMLVPPKKWKGYNKGGYLFLPSYVMRTHGSRKQQEA 477
+ Y+KG +LFLPSYVMRTHG+R+Q++A
Sbjct: 284 ---------------------------------QQYDKGAHLFLPSYVMRTHGARQQRDA 310
Query: 478 LKSVTGNCMKKVFEALDTLGSTKWRVNKQVLSVLESIWVSGGNIAGLVDRNDVLIPEKPL 537
++ M+ VFEAL+TLGSTKWRVNK+VLS+++ IW SGG +A LVDR DV +PEKP
Sbjct: 311 VRRAPREQMQSVFEALNTLGSTKWRVNKRVLSIVDRIWSSGGRLADLVDRTDVALPEKPD 370
Query: 538 SEDMTEVQKWKWSVRKAKKINQERHSQRCDTELKLSVARRMKDEEGFYYPHNLDFRGRAY 597
+ED +++KW+W++R AKK N ERHSQRCD ELKL+VAR+MKDE+GFYYPHNLDFRGRAY
Sbjct: 371 TEDEDKLKKWRWTLRAAKKENSERHSQRCDVELKLAVARKMKDEDGFYYPHNLDFRGRAY 430
Query: 598 PMHPHLNHLSSDVCRGVLEFAEGRPLGKSGLRWLKIHLANLFSGGVEKLSHDGRLAFVEN 657
PMHP+LNHL SD+CRGVLEFAEGRPLGKSGLRWLKIHLANL++GGV+KLS+DGR+AF EN
Sbjct: 431 PMHPYLNHLGSDLCRGVLEFAEGRPLGKSGLRWLKIHLANLYAGGVDKLSYDGRIAFTEN 490
Query: 658 HLYEIFDSAENPINGSRWWLTAEDPFQCLAACINLSEALKSSSPHSVISHLPIHQDGSCN 717
HL +IFDSA+ P+ G RWWL AEDPFQCLA CINL+EAL+S SP ++ISH+P+HQDGSCN
Sbjct: 491 HLEDIFDSADRPLEGKRWWLGAEDPFQCLAVCINLTEALRSPSPETMISHIPVHQDGSCN 550
Query: 718 GLQHYAALGRNTLEAAAVNLVAGEKPADVYSEIAVRVHEIMKRDSNKDPSKHPQALLAKI 777
GLQHYAALGR+ L A AVNLVAGEKPADVY+ IA RV EIMK D+ KDP+ P A A++
Sbjct: 551 GLQHYAALGRDKLGAIAVNLVAGEKPADVYTGIATRVVEIMKNDALKDPATDPDAARARL 610
Query: 778 LIDQVDRKLVKQTVMTSVYGVTFVGAREQIKRRLEEKGHITDDRQLFAAACYAAKVTLTA 837
L+DQVDRKLVKQTVMTSVYGVT+VGAREQIKRRL+E+ I DD +LF+A+CYAAKVTLTA
Sbjct: 611 LLDQVDRKLVKQTVMTSVYGVTYVGAREQIKRRLKERDMICDDSELFSASCYAAKVTLTA 670
Query: 838 LGEIFEAARSIMGWLGDCAKVIASENQPVRWTTPLGLPVVQPYCKNERHLIRTSLQVLAL 897
LGE+F+AARSIM WLGDCAKVIA EN+PVRWTTPLGLPVVQPY K RHLI+TSLQVL L
Sbjct: 671 LGEMFQAARSIMNWLGDCAKVIACENEPVRWTTPLGLPVVQPYRKLGRHLIKTSLQVLTL 730
Query: 898 QREGNLVKIRKQRTAFPPNFVHSLDGSHMMMTAVACRDAGLHFAGL 943
QRE + V +++QRTAFPPNFVHSLDGSHMMMTAVAC+ GL+FAG+
Sbjct: 731 QRETDKVMVKRQRTAFPPNFVHSLDGSHMMMTAVACKRQGLNFAGV 776
Score = 141 bits (355), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 65/124 (52%), Positives = 92/124 (74%)
Query: 174 KFNLLRRRQVKQETEAWERMVDEYKELEAKMIEKRLAPNLPHIKGLFLGWFGPLSEAIER 233
K+ +LRRRQ++ ETEAWE+ +EY+EL A M +++LAPNLP++K LFLGWF PL + I
Sbjct: 118 KYAMLRRRQIQIETEAWEQAAEEYRELLADMCQQKLAPNLPYVKSLFLGWFEPLRDQIIA 177
Query: 234 EQKMQRTKKQKAAYAPHIELLPADKVAVIVMHKMMGLVMAGHEDRCVQVVQAAVHIGMAI 293
EQ++ + +A++A + +LPAD +AVI MHK+MGL+M G D V+V+QAA IG AI
Sbjct: 178 EQELVGERGARASHARYFNMLPADMMAVITMHKLMGLLMTGSGDGSVRVIQAACQIGEAI 237
Query: 294 EQEI 297
E E+
Sbjct: 238 EHEV 241
>gi|21425677|emb|CAC95026.1| plastid RNA polymerase [Nicotiana tabacum]
Length = 557
Score = 825 bits (2131), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 397/491 (80%), Positives = 448/491 (91%), Gaps = 3/491 (0%)
Query: 453 YNKGGYLFLPSYVMRTHGSRKQQEALKSVTGNCMKKVFEALDTLGSTKWRVNKQVLSVLE 512
Y+KGGYLFLPSY+MRTHGSR+QQ+A++ V M++V+EALDTLGSTKWRVNK++L+V+E
Sbjct: 1 YDKGGYLFLPSYLMRTHGSRRQQDAVRGVPTKQMQQVYEALDTLGSTKWRVNKRILNVVE 60
Query: 513 SIWVSGGNIAGLVDRNDVLIPEKPLSEDMTEVQKWKWSVRKAKKINQERHSQRCDTELKL 572
SIW GGNIAGLVDR DV IPE S+D+ EV+KWKW VRK+KKINQE HSQRCDTELKL
Sbjct: 61 SIWAGGGNIAGLVDRKDVPIPELSNSDDIMEVKKWKWKVRKSKKINQELHSQRCDTELKL 120
Query: 573 SVARRMKDEEGFYYPHNLDFRGRAYPMHPHLNHLSSDVCRGVLEFAEGRPLGKSGLRWLK 632
SVAR++KDEEGFYYPHNLDFRGRAYPMHPHLNHLSSD+CRG+LEFAEGRPLGKSGLRWLK
Sbjct: 121 SVARKLKDEEGFYYPHNLDFRGRAYPMHPHLNHLSSDLCRGILEFAEGRPLGKSGLRWLK 180
Query: 633 IHLANLFSGGVEKLSHDGRLAFVENHLYEIFDSAENPINGSRWWLTAEDPFQCLAACINL 692
IHLA+L++GGVEKL +D RLAFVENH+++I DSA NP+NG+RWWL AEDPFQCLAACINL
Sbjct: 181 IHLASLYAGGVEKLCYDARLAFVENHIHDILDSANNPLNGNRWWLNAEDPFQCLAACINL 240
Query: 693 SEALKSSSPHSVISHLPIHQDGSCNGLQHYAALGRNTLEAAAVNLVAGEKPADVYSEIAV 752
SEALKSSSPH+VISHLPIHQDGSCNGLQHYAALGR+++EAAAVNLVAGEKPADVY+EIA+
Sbjct: 241 SEALKSSSPHTVISHLPIHQDGSCNGLQHYAALGRDSMEAAAVNLVAGEKPADVYTEIAL 300
Query: 753 RVHEIMKRDSNKDPSKHPQALLAKILIDQVDRKLVKQTVMTSVYGVTFVGAREQIKRRLE 812
RV I++ DS KDP+ P ALLAK+LIDQVDRKLVKQTVMTSVYGVT+VGAREQIKRRLE
Sbjct: 301 RVDHIIRGDSIKDPAIDPNALLAKLLIDQVDRKLVKQTVMTSVYGVTYVGAREQIKRRLE 360
Query: 813 EKGHITDDRQLFAAACYAAKVTLTALGEIFEAARSIMGWLGDCAKVIASENQPVRWTTPL 872
EKG I DDR LF A+CY VTL ALGE+F+AAR M WLGDCAKVIA ENQPVRWTTPL
Sbjct: 361 EKGLIDDDRLLFTASCY---VTLAALGELFQAARGTMTWLGDCAKVIALENQPVRWTTPL 417
Query: 873 GLPVVQPYCKNERHLIRTSLQVLALQREGNLVKIRKQRTAFPPNFVHSLDGSHMMMTAVA 932
GLPVVQPY K +RH+IRTSLQ+LALQREG+ V++RKQRTAFPPNFVHSLDGSHMMMTAVA
Sbjct: 418 GLPVVQPYFKTQRHVIRTSLQILALQREGDAVEVRKQRTAFPPNFVHSLDGSHMMMTAVA 477
Query: 933 CRDAGLHFAGL 943
CRDAGL FAG+
Sbjct: 478 CRDAGLQFAGV 488
>gi|21425673|emb|CAC95024.1| mitochondrial and plastid RNA polymerase [Nicotiana tabacum]
Length = 562
Score = 816 bits (2109), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 374/564 (66%), Positives = 473/564 (83%), Gaps = 5/564 (0%)
Query: 297 IRIHSFLEKTKNYK--RKKIIADTEEVLSKEKELLRKRVNSLIKSKRVMEAQKLLK-NEE 353
+RIH+FLEKTK K + K D E V ++E+E LRK+V +L+K +++ ++++ ++
Sbjct: 1 VRIHNFLEKTKKQKAEKDKQKEDGEHV-TQEQEKLRKKVTNLMKKQKLRAVGQIVRRQDD 59
Query: 354 TKPWGRDTQAKLGSRLVELLIETAYVQHPVNPADYSPPDVRPAFRHRFKTILKHPGQKTT 413
+KPWG+D +AK+GSRL+ELL++TAY+Q P N PPD+RPAF H +T+ K + +
Sbjct: 60 SKPWGQDAKAKVGSRLIELLLQTAYIQPPANQLAVDPPDIRPAFLHSVRTVAKET-KSAS 118
Query: 414 KRYGVVECDPLVLEGLDRSAKHMLIPYVPMLVPPKKWKGYNKGGYLFLPSYVMRTHGSRK 473
+RYG+++CD LV +GL+R+A+HM+IPY+PMLVPP KW GY+KGG+L+LPSYVMRTHG+R+
Sbjct: 119 RRYGIIQCDELVFKGLERTARHMVIPYMPMLVPPVKWTGYDKGGHLYLPSYVMRTHGARQ 178
Query: 474 QQEALKSVTGNCMKKVFEALDTLGSTKWRVNKQVLSVLESIWVSGGNIAGLVDRNDVLIP 533
Q+EA+K + N ++ VFEALDTLGSTKWR+NK+VLSV++ IW GG +A LVDR+D +P
Sbjct: 179 QREAVKRASRNQLQPVFEALDTLGSTKWRINKRVLSVIDRIWAGGGRLADLVDRDDAPLP 238
Query: 534 EKPLSEDMTEVQKWKWSVRKAKKINQERHSQRCDTELKLSVARRMKDEEGFYYPHNLDFR 593
E+P +ED KW+W V+ KK N+ERHSQRCD ELKL+VAR+MKDEEGF+YPHN+DFR
Sbjct: 239 EEPDTEDEALRTKWRWKVKSVKKENRERHSQRCDIELKLAVARKMKDEEGFFYPHNVDFR 298
Query: 594 GRAYPMHPHLNHLSSDVCRGVLEFAEGRPLGKSGLRWLKIHLANLFSGGVEKLSHDGRLA 653
GRAYPMHPHLNHL SD+CRGVL FAEGRPLG+SGLRWLKIHLANLF+GGVEKLS +GR+A
Sbjct: 299 GRAYPMHPHLNHLGSDICRGVLVFAEGRPLGESGLRWLKIHLANLFAGGVEKLSLEGRIA 358
Query: 654 FVENHLYEIFDSAENPINGSRWWLTAEDPFQCLAACINLSEALKSSSPHSVISHLPIHQD 713
F ENH+ +IFDSA+ P+ G RWWL AEDPFQCLA CINLSEA++SSSP + ISH+P+HQD
Sbjct: 359 FTENHMDDIFDSADKPLEGRRWWLNAEDPFQCLAVCINLSEAVRSSSPETSISHIPVHQD 418
Query: 714 GSCNGLQHYAALGRNTLEAAAVNLVAGEKPADVYSEIAVRVHEIMKRDSNKDPSKHPQAL 773
GSCNGLQHYAALGR+ L AAAVNLVAGEKPADVYS IA RV +IMKRD+ +DP++ P A+
Sbjct: 419 GSCNGLQHYAALGRDELGAAAVNLVAGEKPADVYSGIAARVLDIMKRDAQRDPAEFPDAV 478
Query: 774 LAKILIDQVDRKLVKQTVMTSVYGVTFVGAREQIKRRLEEKGHITDDRQLFAAACYAAKV 833
A+ L++QVDRKLVKQTVMTSVYGVT++GAR+QIKRRL+E+G I DD +LF AACYAAKV
Sbjct: 479 RARALVNQVDRKLVKQTVMTSVYGVTYIGARDQIKRRLKERGAIADDSELFGAACYAAKV 538
Query: 834 TLTALGEIFEAARSIMGWLGDCAK 857
TLTALGE+FEAARSIM WLG+CAK
Sbjct: 539 TLTALGEMFEAARSIMTWLGECAK 562
>gi|168052257|ref|XP_001778567.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162670021|gb|EDQ56597.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 861
Score = 812 bits (2098), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 407/793 (51%), Positives = 549/793 (69%), Gaps = 20/793 (2%)
Query: 168 REMKKRKFNLLRRRQVKQETEAWERMVDEYKELEAKMIEKRLAPNLPHIKGLFLGWFGPL 227
R+ K LR+RQ+ ETEAW +Y+E A+M K+LAPNLP + L LGW+ PL
Sbjct: 3 RKKGHNKLQELRQRQIINETEAWTNAEAQYEEFIAEMCRKKLAPNLPASQLLLLGWYEPL 62
Query: 228 SEAIEREQKM---QRTKKQKAAYAPHIELLPADKVAVIVMHKMMGLVMAGHEDRCVQVVQ 284
+AI EQ+ + ++A+Y P + LP ++AVI MH ++ LVM+ + V+V+Q
Sbjct: 63 RDAIAEEQRAFSELEFRGERASYGPFLCQLPPSQLAVITMHCLLALVMSNEKMGYVKVIQ 122
Query: 285 AAVHIGMAIEQEIRIHSFL---EKTKNYKRKKIIAD--TEEVLSKEKEL-----LRKRVN 334
AA+HIG A+EQE+ I K KRK I D + S + EL L +
Sbjct: 123 AALHIGEAVEQEVLIRKLRIGKAKKNETKRKGITKDDGISTIESGKVELTTSPELPTQAT 182
Query: 335 SLIKSKRVMEAQKLL-KNEETKPWGRDTQAKLGSRLVELLIETAYVQHPVNPADYSPPDV 393
+ K +++ + +L K + PWG AK+GSRL+EL +ETA ++ P + +
Sbjct: 183 GMQKLRKLRLWRSMLQKASGSDPWGPTIYAKVGSRLLELFMETAVIRVPSDDP-HVDASF 241
Query: 394 RPAFRHRFKTILKHPGQKTTKRYGVVECDPLVLEGLDRSAKHMLIPYVPMLVPPKKWKGY 453
P F+H K + G+ +T +GVVEC+PLVLE +D+S K++++PY+PM+ PK WKG+
Sbjct: 242 EPVFQHTNKKFVCTNGRSSTG-FGVVECNPLVLEQIDKSVKYVIMPYMPMVSKPKHWKGF 300
Query: 454 NKGGYLFLPSYVMRTHGSRKQQEALKSVTGNCMKKVFEALDTLGSTKWRVNKQVLSVLES 513
+ GGYLFL S +MRTHGS++Q + K+ MKK+F+AL+ LG T WRVNK VL+VLE
Sbjct: 301 HDGGYLFLKSSIMRTHGSKEQYDIFKNTPRENMKKIFQALNVLGETGWRVNKPVLAVLEQ 360
Query: 514 IWVSGGNIAGLVDRNDVLIPEKPLSEDMTEVQKWKWSVRKAKKINQERHSQRCDTELKLS 573
IW GG +A LVD DVL+P KP + ++ E++ W+ V K+ N ER+S RCD ELKL+
Sbjct: 361 IWKEGGRLANLVDAEDVLVPAKPETNNLDELKSWRREVGIVKRTNYERYSLRCDVELKLA 420
Query: 574 VARRMKDEEGFYYPHNLDFRGRAYPMHPHLNHLSSDVCRGVLEFAEGRPLGKSGLRWLKI 633
VAR++ +E+ FY PHNLDFRGRAYPMHP+LNHL SD+CRGVLEFA+GRPLG++GLRWLKI
Sbjct: 421 VARKLVNEDAFYLPHNLDFRGRAYPMHPNLNHLGSDMCRGVLEFAKGRPLGETGLRWLKI 480
Query: 634 HLANLFSGGVEKLSHDGRLAFVENHLYEIFDSAENPINGSRWWLTAEDPFQCLAACINLS 693
HLANL+ G + KLS D R+A V+ H+ ++FDSAENP+NG+RWWL AEDPFQ LAACI++
Sbjct: 481 HLANLYGGSISKLSFDARVAHVDTHMDDVFDSAENPMNGNRWWLKAEDPFQFLAACIDIR 540
Query: 694 EALKSSSPHSVISHLPIHQDGSCNGLQHYAALGRNTLEAAAVNLVAGEKPADVYSEIAVR 753
A+KS +P + S LP+HQDGSCNGLQHYAALGR+ + A VNL+AG+ PADVYS IA R
Sbjct: 541 NAVKSGNPKTYNSFLPVHQDGSCNGLQHYAALGRDRIGAGTVNLLAGDVPADVYSAIADR 600
Query: 754 VHEIMKRDSNKDPSKHPQALLAKILIDQVDRKLVKQTVMTSVYGVTFVGAREQIKRRLEE 813
VH +++ + K+P A +A++L+ Q+DRKLVKQT+MTSVYGVTFVGAR QI RL+E
Sbjct: 601 VHRTIEKAALKNPEASKHAAIARVLLGQIDRKLVKQTIMTSVYGVTFVGARIQILNRLKE 660
Query: 814 KGHITDDRQLFAAACYAAKVTLTALGEIFEAARSIMGWLGDCAKVIASENQPVRWTTPLG 873
+G I D +LF A+ YAAKVTL ALGE F AR IM WL +CA++IA V+WTTPLG
Sbjct: 661 RGIIQDGGELFKASVYAAKVTLDALGEGFREARCIMNWLSECAQIIAHSGNSVKWTTPLG 720
Query: 874 LPVVQPYCKNERHLIRTSLQVL---ALQREGNLVKIRKQRTAFPPNFVHSLDGSHMMMTA 930
L VVQPY RHL++T+LQ L ++ + ++K R QR+AF PNF+HSLD +HMM+TA
Sbjct: 721 LEVVQPYRNPSRHLVKTALQDLHIRSVDVDSPVLKTR-QRSAFAPNFIHSLDSTHMMLTA 779
Query: 931 VACRDAGLHFAGL 943
+A AG+ FAG+
Sbjct: 780 LASNQAGISFAGV 792
>gi|188529544|emb|CAP70041.1| RNA polymerase [Selaginella moellendorffii]
Length = 1002
Score = 805 bits (2080), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 398/770 (51%), Positives = 538/770 (69%), Gaps = 18/770 (2%)
Query: 181 RQVKQETEAWERMVDEYKELEAKMIEKRLAPNLPHIKGLFLGWFGPLSEAIEREQKM--- 237
RQ K E +AW+ V EY+++ +M K+LAPNLP K L + WF P+ + I +E K
Sbjct: 175 RQQKLELDAWDAAVREYRKILVEMCRKKLAPNLPFAKSLMVSWFEPVRDEIAKELKAIEK 234
Query: 238 QRTKKQKAAYAPHIEL--LPADKVAVIVMHKMMGLVMAGHEDRCVQVVQAAVHIGMAIEQ 295
+ + ++ Y P ++ L AD +AVI MH+++ L+M + C+++ AV IG A+EQ
Sbjct: 235 EEPGEDRSHYGPLLKGAGLTADVLAVITMHRLVALMMQDVDSGCIRLANTAVLIGDAVEQ 294
Query: 296 EIRIHSFLEKTKNYKRKKIIADTEEVLSKEKELLRKRVNSLIKSKRVMEAQKLLKN-EET 354
EI+I L+K K + + K++ L K ++I+ R +++LK+ + +
Sbjct: 295 EIKIRRALKKRKPKELAEEAEPPTPEEEKKEYLKDKLRRAIIERPR--NVKEILKSLDPS 352
Query: 355 KPWGRDTQAKLGSRLVELLIETAYVQHPVNPADYSPPDVRPAFRHRFKTILKHPGQKTTK 414
+PW QAKLG RL+++++ +++ PV+ ++RPAFRH +LK P +
Sbjct: 353 QPWPSFIQAKLGCRLIDIMMSNSHINVPVSDCPEDGTEIRPAFRH----VLKVPKGGLLR 408
Query: 415 RYGVVECDPLVLEGLDRSAKHMLIPYVPMLVPPKKWKGYNKGGYLFLPSYVMRTHGSRKQ 474
YG + CDP + +D SAK +++PY+PML+PP+ WKGY+ G YL L S +MRTHGS++Q
Sbjct: 409 SYGAIVCDPHLRGRIDDSAKFIVMPYMPMLIPPRAWKGYHNGAYLHLRSVIMRTHGSKQQ 468
Query: 475 QEALKSVTGNCMKKVFEALDTLGSTKWRVNKQVLSVLESIWVSGGNIAGLVDRNDVLIPE 534
+EA+++ +++VF ALDTLG+ W++NK+V V+E +W +GG I GLVDR DV +P
Sbjct: 469 REAVRNTPRAQLQQVFRALDTLGAASWKINKEVFEVIEKLWSAGGGIGGLVDRKDVPLPP 528
Query: 535 KPLSEDMTEVQKWKWSVRKAKKINQERHSQRCDTELKLSVARRMKDEEGFYYPHNLDFRG 594
KP +ED E++ W+ K K+ N ER+SQRCD ELKL+VAR +KDEE FYYPHNLDFRG
Sbjct: 529 KPNTEDEAEMRSWRKVFYKGKRTNSERNSQRCDLELKLAVARSLKDEECFYYPHNLDFRG 588
Query: 595 RAYPMHPHLNHLSSDVCRGVLEFAEGRPLGKSGLRWLKIHLANLFSGGVEKLSHDGRLAF 654
RAYPMH HLNHL SDVCRG+L FA+GRPLG +GLRWLKIH+AN+F+ G +KL DGR+AF
Sbjct: 589 RAYPMHAHLNHLGSDVCRGMLLFAKGRPLGPTGLRWLKIHIANVFANGADKLPFDGRVAF 648
Query: 655 VENHLYEIFDSAENPINGSRWWLTAEDPFQCLAACINLSEALKSSSPHSVISHLPIHQDG 714
E++L + SA P+ +RWWL AEDPFQCLAACI+L A+ S +P ISHLP+HQDG
Sbjct: 649 AESNLEHVVASANQPLK-NRWWLKAEDPFQCLAACIDLRNAMHSPNPEYYISHLPVHQDG 707
Query: 715 SCNGLQHYAALGRNTLEAAAVNLVAGEKPADVYSEIAVRVHEIMKRDSNKDPSKHPQALL 774
SCNGLQHYAALGR+ A AVNL+ + PADVYS IA RV +++ D+ KDP+ A+
Sbjct: 708 SCNGLQHYAALGRDKTGARAVNLIGADYPADVYSGIAARVRTLVEEDARKDPA----AVY 763
Query: 775 AKILIDQVDRKLVKQTVMTSVYGVTFVGAREQIKRRLEEKGHITDDRQLFAAACYAAKVT 834
AK+L+ VDRKLVKQTVMTSVYGVT+VGAR QI RL +KG I D+ L+ CYAAKVT
Sbjct: 764 AKLLVGHVDRKLVKQTVMTSVYGVTYVGARNQITNRLRDKGFILDEPTLYRTGCYAAKVT 823
Query: 835 LTALGEIFEAARSIMGWLGDCAKVIASENQPVRWTTPLGLPVVQPYCKNERHLIRTSLQV 894
L ALGE+F AR IM WLG CAKVIA++ VRW TPLGLPVVQPY + RH+++T LQ
Sbjct: 824 LNALGEMFGEARLIMNWLGQCAKVIANDGDSVRWITPLGLPVVQPYRRPGRHVVKTCLQC 883
Query: 895 LALQREGNL-VKIRKQRTAFPPNFVHSLDGSHMMMTAVACRDAGLHFAGL 943
L L+ + + V +QR+AFPPNFVHS+DGSHMMMTAVAC++AGL FAG+
Sbjct: 884 LILRTDTDQPVLAARQRSAFPPNFVHSMDGSHMMMTAVACQEAGLTFAGV 933
>gi|302766019|ref|XP_002966430.1| hypothetical protein SELMODRAFT_85910 [Selaginella moellendorffii]
gi|302792739|ref|XP_002978135.1| hypothetical protein SELMODRAFT_108034 [Selaginella moellendorffii]
gi|300154156|gb|EFJ20792.1| hypothetical protein SELMODRAFT_108034 [Selaginella moellendorffii]
gi|300165850|gb|EFJ32457.1| hypothetical protein SELMODRAFT_85910 [Selaginella moellendorffii]
Length = 831
Score = 804 bits (2077), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 399/773 (51%), Positives = 539/773 (69%), Gaps = 18/773 (2%)
Query: 178 LRRRQVKQETEAWERMVDEYKELEAKMIEKRLAPNLPHIKGLFLGWFGPLSEAIEREQKM 237
L RQ K E +AW+ V EY+++ +M K+LAPNLP K L + WF P+ + I +E K
Sbjct: 1 LFNRQQKLELDAWDAAVREYRKILVEMCRKKLAPNLPFAKSLMVSWFEPVRDEIAKELKA 60
Query: 238 ---QRTKKQKAAYAPHIEL--LPADKVAVIVMHKMMGLVMAGHEDRCVQVVQAAVHIGMA 292
+ + ++ Y P ++ L AD +AVI MH+++ L+M + C+++ AV IG A
Sbjct: 61 IEKEEPGEDRSHYGPLLKGAGLTADVLAVITMHRLVALMMQDVDSGCIRLANTAVLIGDA 120
Query: 293 IEQEIRIHSFLEKTKNYKRKKIIADTEEVLSKEKELLRKRVNSLIKSKRVMEAQKLLKN- 351
+EQEI+I L+K K + + K++ L K ++I+ R +++LK+
Sbjct: 121 VEQEIKIRRALKKRKPKELAEEAEPPTPEEEKKEYLKDKLRRAIIERPR--NVKEILKSL 178
Query: 352 EETKPWGRDTQAKLGSRLVELLIETAYVQHPVNPADYSPPDVRPAFRHRFKTILKHPGQK 411
+ ++PW QAKLG RL+++++ +++ PV+ ++RPAFRH +LK P
Sbjct: 179 DPSQPWPSFIQAKLGCRLIDIMMSNSHINVPVSDCPEDGTEIRPAFRH----VLKVPKGG 234
Query: 412 TTKRYGVVECDPLVLEGLDRSAKHMLIPYVPMLVPPKKWKGYNKGGYLFLPSYVMRTHGS 471
+ YG + CDP + +D SAK +++PY+PML+PP+ WKGY+ G YL L S +MRTHGS
Sbjct: 235 LLRSYGAIVCDPHLRGRIDDSAKFIVMPYMPMLIPPRAWKGYHNGAYLHLRSVIMRTHGS 294
Query: 472 RKQQEALKSVTGNCMKKVFEALDTLGSTKWRVNKQVLSVLESIWVSGGNIAGLVDRNDVL 531
++Q+EA+++ +++VF ALDTLG+ W++NK+V V+E +W +GG I GLVDR DV
Sbjct: 295 KQQREAVRNTPRAQLQQVFRALDTLGAASWKINKEVFEVIEKLWSAGGGIGGLVDRKDVP 354
Query: 532 IPEKPLSEDMTEVQKWKWSVRKAKKINQERHSQRCDTELKLSVARRMKDEEGFYYPHNLD 591
+P KP +ED E++ W+ K K+ N ER+SQRCD ELKL+VAR +KDEE FYYPHNLD
Sbjct: 355 LPPKPNTEDEAEMRSWRKVFYKGKRTNSERNSQRCDLELKLAVARSLKDEECFYYPHNLD 414
Query: 592 FRGRAYPMHPHLNHLSSDVCRGVLEFAEGRPLGKSGLRWLKIHLANLFSGGVEKLSHDGR 651
FRGRAYPMH HLNHL SDVCRG+L FA+GRPLG +GLRWLKIH+AN+F+ G +KL DGR
Sbjct: 415 FRGRAYPMHAHLNHLGSDVCRGMLLFAKGRPLGPTGLRWLKIHIANVFANGADKLPFDGR 474
Query: 652 LAFVENHLYEIFDSAENPINGSRWWLTAEDPFQCLAACINLSEALKSSSPHSVISHLPIH 711
+AF E++L + SA P+ +RWWL AEDPFQCLAACI+L A+ S +P ISHLP+H
Sbjct: 475 VAFAESNLEHVVASANQPLK-NRWWLKAEDPFQCLAACIDLRNAMHSPNPEYYISHLPVH 533
Query: 712 QDGSCNGLQHYAALGRNTLEAAAVNLVAGEKPADVYSEIAVRVHEIMKRDSNKDPSKHPQ 771
QDGSCNGLQHYAALGR+ A AVNL+ + PADVYS IA RV +++ D+ KDP+
Sbjct: 534 QDGSCNGLQHYAALGRDKTGARAVNLIGADYPADVYSGIAARVRTLVEEDARKDPA---- 589
Query: 772 ALLAKILIDQVDRKLVKQTVMTSVYGVTFVGAREQIKRRLEEKGHITDDRQLFAAACYAA 831
A+ AK+L+ VDRKLVKQTVMTSVYGVT+VGAR QI RL +KG I D+ L+ CYAA
Sbjct: 590 AVYAKLLVGHVDRKLVKQTVMTSVYGVTYVGARNQITNRLRDKGFILDEPTLYRTGCYAA 649
Query: 832 KVTLTALGEIFEAARSIMGWLGDCAKVIASENQPVRWTTPLGLPVVQPYCKNERHLIRTS 891
KVTL ALGE+F AR IM WLG CAKVIA++ VRW TPLGLPVVQPY + RH+++T
Sbjct: 650 KVTLNALGEMFGEARLIMNWLGQCAKVIANDGDSVRWITPLGLPVVQPYRRPGRHVVKTC 709
Query: 892 LQVLALQREGNL-VKIRKQRTAFPPNFVHSLDGSHMMMTAVACRDAGLHFAGL 943
LQ L L+ + + V +QR+AFPPNFVHS+DGSHMMMTAVAC++AGL FAG+
Sbjct: 710 LQCLILRTDTDQPVLAARQRSAFPPNFVHSMDGSHMMMTAVACQEAGLTFAGV 762
>gi|255585835|ref|XP_002533595.1| DNA-directed RNA polymerase 2B, chloroplast/mitochondrial
precursor, putative [Ricinus communis]
gi|223526524|gb|EEF28786.1| DNA-directed RNA polymerase 2B, chloroplast/mitochondrial
precursor, putative [Ricinus communis]
Length = 589
Score = 804 bits (2076), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 371/491 (75%), Positives = 432/491 (87%)
Query: 453 YNKGGYLFLPSYVMRTHGSRKQQEALKSVTGNCMKKVFEALDTLGSTKWRVNKQVLSVLE 512
Y+KG +LFLPSYVMRTHG+R+Q+EA+K ++ VFEALDTLGSTKWR+NK++L V++
Sbjct: 30 YDKGAHLFLPSYVMRTHGARQQREAVKITPREQLQPVFEALDTLGSTKWRINKRILGVVD 89
Query: 513 SIWVSGGNIAGLVDRNDVLIPEKPLSEDMTEVQKWKWSVRKAKKINQERHSQRCDTELKL 572
IW SGG + LVDRNDV +PEKP +ED V+KWKW +R AKK N+ERHSQRCDTELKL
Sbjct: 90 RIWNSGGRLGDLVDRNDVPLPEKPETEDEALVRKWKWKLRAAKKENRERHSQRCDTELKL 149
Query: 573 SVARRMKDEEGFYYPHNLDFRGRAYPMHPHLNHLSSDVCRGVLEFAEGRPLGKSGLRWLK 632
+VAR+MKDEEGFYYPHNLDFRGRAYPMHP+LNHL SD+CRG+LEFAEGRPLGKSGLRWLK
Sbjct: 150 AVARKMKDEEGFYYPHNLDFRGRAYPMHPYLNHLGSDLCRGILEFAEGRPLGKSGLRWLK 209
Query: 633 IHLANLFSGGVEKLSHDGRLAFVENHLYEIFDSAENPINGSRWWLTAEDPFQCLAACINL 692
IHLANLF+GGV+KLS+DGR+AF ENHL +IFDSA+ P+ G RWWL AEDPFQCLA CI+L
Sbjct: 210 IHLANLFAGGVDKLSYDGRIAFTENHLDDIFDSADRPLEGKRWWLNAEDPFQCLAVCIDL 269
Query: 693 SEALKSSSPHSVISHLPIHQDGSCNGLQHYAALGRNTLEAAAVNLVAGEKPADVYSEIAV 752
+EAL+SSSP + ISH+PIHQDGSCNGLQHYAALGR+ L AAAVNLVAGEKPADVYS IAV
Sbjct: 270 TEALRSSSPETFISHVPIHQDGSCNGLQHYAALGRDKLGAAAVNLVAGEKPADVYSGIAV 329
Query: 753 RVHEIMKRDSNKDPSKHPQALLAKILIDQVDRKLVKQTVMTSVYGVTFVGAREQIKRRLE 812
RV +IM++D+ KDP P AL AKILI QVDRKLVKQTVMTSVYGVT++GAR+QIKRRL+
Sbjct: 330 RVLDIMRKDAQKDPKVFPDALHAKILISQVDRKLVKQTVMTSVYGVTYIGARDQIKRRLK 389
Query: 813 EKGHITDDRQLFAAACYAAKVTLTALGEIFEAARSIMGWLGDCAKVIASENQPVRWTTPL 872
E+G I DD ++F A+CYAAKVTLTALGE+FEAARSIM WLG+CAK+IASEN+PVRWTTPL
Sbjct: 390 ERGFIADDTEIFVASCYAAKVTLTALGEMFEAARSIMSWLGECAKIIASENEPVRWTTPL 449
Query: 873 GLPVVQPYCKNERHLIRTSLQVLALQREGNLVKIRKQRTAFPPNFVHSLDGSHMMMTAVA 932
GLPVVQPY RHLI+TSLQVL LQ+E V +++QRTAFPPNFVHSLDGSHMMMTAV
Sbjct: 450 GLPVVQPYRNFGRHLIKTSLQVLTLQQETEKVMVKRQRTAFPPNFVHSLDGSHMMMTAVT 509
Query: 933 CRDAGLHFAGL 943
C+ AGL+FAG+
Sbjct: 510 CKRAGLNFAGV 520
>gi|357502599|ref|XP_003621588.1| DNA-directed RNA polymerase [Medicago truncatula]
gi|355496603|gb|AES77806.1| DNA-directed RNA polymerase [Medicago truncatula]
Length = 895
Score = 743 bits (1918), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 362/495 (73%), Positives = 421/495 (85%), Gaps = 2/495 (0%)
Query: 451 KGYNKGGYLFLPSYVMRTHGSRKQQEALKSVTGNCMKKVFEALDTLGSTKWRVNKQVLSV 510
+ ++KGGYLFLPSYVMRTHG ++Q+EA+K V ++ VFEALDTLG+TKWRVN +VLSV
Sbjct: 332 QNFDKGGYLFLPSYVMRTHGVKQQREAVKKVPRKQLEPVFEALDTLGNTKWRVNNKVLSV 391
Query: 511 LESIWVSGGNIAGLVDRNDVLIPEKPLSEDMTEVQKWKWSVRKAKKINQERHSQRCDTEL 570
++ IW GG +AGLVDRNDV IPE+ S+D E +KWKW V+ KK N+ER+S RCDTEL
Sbjct: 392 VDRIWAGGGRLAGLVDRNDVEIPEELESDDEAEKKKWKWKVKSVKKENRERYSLRCDTEL 451
Query: 571 KLSVARRMKDEEGFYYPHNLDFRGRAYPMHPHLNHLSSDVCRGVLEFAEGRPLGKSGLRW 630
KL+VAR+MKDEE FYYPHNLDFRGRAYPMHPHLNHL SDVCRG+LEFA+GRPLGKSGL W
Sbjct: 452 KLAVARKMKDEECFYYPHNLDFRGRAYPMHPHLNHLGSDVCRGILEFADGRPLGKSGLHW 511
Query: 631 LKIHLANLFSGGVEKLSHDGRLAFVENHLYEIFDSAENPINGSRWWLTAEDPFQCLAACI 690
LKIHLANL+ GGV+KLS++GR+ FVENHL EIFDSAE P+ G RWWL AEDPFQ LAAC+
Sbjct: 512 LKIHLANLYGGGVDKLSNEGRITFVENHLDEIFDSAEQPMEGRRWWLNAEDPFQFLAACM 571
Query: 691 NLSEALKSSSPHSVISHLPIHQDGSCNGLQHYAALGRNTLEAAAVNLVAGEKPADVYSEI 750
L+EALK S+P S ISH+P+HQDGSCNGLQHYAALGR+ L AAAVNLVAGEKPADVYS I
Sbjct: 572 TLTEALKISTPESFISHIPVHQDGSCNGLQHYAALGRDKLGAAAVNLVAGEKPADVYSGI 631
Query: 751 AVRVHEIMKRDSNKDPSKHPQALLAKILIDQVDRKLVKQTVMTSVYGVTFVGAREQIKRR 810
A RV IMK D+ KDP +A AKIL++QVDRKLVKQTVMTSVYGVT++GAREQIKRR
Sbjct: 632 AARVLAIMKIDAQKDPETFSEARHAKILVNQVDRKLVKQTVMTSVYGVTYIGAREQIKRR 691
Query: 811 LEEKGHITDDRQLFAAACYAAKVTLTALGEIFEAARSIMGWLGDCAKVIASENQPVRWTT 870
L+E+ I DD +LF AACYAAKVTLTAL E+FE ARSIM WLGDCAKVIASEN+PV WTT
Sbjct: 692 LKERDAIADDSELFGAACYAAKVTLTALQEMFEGARSIMNWLGDCAKVIASENEPVCWTT 751
Query: 871 PLGLPVVQPYCKNERHL--IRTSLQVLALQREGNLVKIRKQRTAFPPNFVHSLDGSHMMM 928
PLGLPVVQPY RH+ ++TSLQ+L L+RE + V +++QRTAFPPNFVHSLDGSHMMM
Sbjct: 752 PLGLPVVQPYRYQGRHIVSVKTSLQMLTLKRETDKVMVKRQRTAFPPNFVHSLDGSHMMM 811
Query: 929 TAVACRDAGLHFAGL 943
TA+AC+ AGL FAG+
Sbjct: 812 TAIACKKAGLSFAGV 826
>gi|224127290|ref|XP_002329241.1| predicted protein [Populus trichocarpa]
gi|222870695|gb|EEF07826.1| predicted protein [Populus trichocarpa]
Length = 543
Score = 721 bits (1862), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 334/455 (73%), Positives = 398/455 (87%), Gaps = 1/455 (0%)
Query: 489 VFEALDTLGSTKWRVNKQVLSVLESIWVSGGNIAGLVDRNDVLIPEKPLSEDMTEVQKWK 548
+F+ALDTLG+T+WRVNK+VLSV++ IW +GG +A LVD +DV +PEKP +ED ++KWK
Sbjct: 21 IFQALDTLGNTRWRVNKRVLSVVDRIWSNGGCLADLVDHSDVPLPEKPETEDEALLKKWK 80
Query: 549 WSVRKAKKINQERHSQRCDTELKLSVARRMKDEEGFYYPHNLDFRGRAYPMHPHLNHLSS 608
W +R KK N+ERH+QRCD ELKL+VAR+MKDEEGFYYPHN+DFRGRAYPMHP+LNHL S
Sbjct: 81 WKLRGVKKENKERHAQRCDIELKLAVARKMKDEEGFYYPHNIDFRGRAYPMHPYLNHLGS 140
Query: 609 DVCRGVLEFAEGRPLGKSGLRWLKIHLANLFSGGVEKLSHDGRLAFVENHLYEIFDSAEN 668
D+CRG+LEFAEGRPLGKSGLRWLKIH+ANLF+GGV+KLS++GR+AF ENHL +IFD +
Sbjct: 141 DLCRGILEFAEGRPLGKSGLRWLKIHIANLFAGGVDKLSYEGRIAFTENHLDDIFDCTDK 200
Query: 669 PINGSRWWLTAEDPFQCLAACINLSEALKSSSPHSVISHLPIHQDGSCNGLQHYAALGRN 728
P++G RWWL AEDPFQ LA CINL+EAL+SSSP + ISH+P+HQDGSCNGLQHYAALGR+
Sbjct: 201 PLDGKRWWLHAEDPFQFLAVCINLTEALRSSSPETYISHIPVHQDGSCNGLQHYAALGRD 260
Query: 729 TLEAAAVNLVAGEKPADVYSEIAVRVHEIMKRDSNKDPSKHPQALLAKILIDQVDRKLVK 788
L AAAVNLVAGEKPADVYS IA RV +IM+RD+ KDP P AL AK LI+QVDRKLVK
Sbjct: 261 KLGAAAVNLVAGEKPADVYSGIAARVLDIMRRDAQKDPDVFPDALRAKELINQVDRKLVK 320
Query: 789 QTVMTSVYGVTFVGAREQIKRRLEEKGHITDDRQLFAAACYAAKVTLTALGEIFEAARSI 848
QTVMTSVYGVT++GAR+QIKRRL+E+G IT++ +F +CYAAKVTLTALGE+FEAARSI
Sbjct: 321 QTVMTSVYGVTYIGARDQIKRRLKERG-ITEESDIFGCSCYAAKVTLTALGEMFEAARSI 379
Query: 849 MGWLGDCAKVIASENQPVRWTTPLGLPVVQPYCKNERHLIRTSLQVLALQREGNLVKIRK 908
M WLGDCAK+IASEN+PVRWTTPLGLPVVQPY K I+TSLQVL LQ+E + V +++
Sbjct: 380 MNWLGDCAKIIASENEPVRWTTPLGLPVVQPYRKLGTRSIKTSLQVLILQKETDKVMVQR 439
Query: 909 QRTAFPPNFVHSLDGSHMMMTAVACRDAGLHFAGL 943
QRTAFPPNFVHSLD SHMMMTAVAC+ AGL+FAG+
Sbjct: 440 QRTAFPPNFVHSLDSSHMMMTAVACKGAGLNFAGV 474
>gi|149940228|emb|CAJ13818.1| DNA-dependent RNA polymerase 1 [Chrysanthemum x morifolium]
Length = 383
Score = 644 bits (1662), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 304/406 (74%), Positives = 353/406 (86%), Gaps = 24/406 (5%)
Query: 453 YNKGGYLFLPSYVMRTHGSRKQQEALKSVTGNCMKKVFEALDTLGSTKWRVNKQVLSVLE 512
Y+ GG+ FLPSY+MRTHGSR+QQ+A++ + M+K++EALDTLGSTKWRVNK++L+V+E
Sbjct: 1 YDCGGHFFLPSYLMRTHGSRQQQDAVEDAPPSQMQKIYEALDTLGSTKWRVNKRLLNVVE 60
Query: 513 SIWVSGGNIAGLVDRNDVLIPEKPLSEDMTEVQKWKWSVRKAKKINQERHSQRCDTELKL 572
SIW +GG+IAGLV+R DV IP+ SED +E+++W+WSVRKAKK+NQE HSQRCD ELKL
Sbjct: 61 SIWAAGGDIAGLVNRQDVSIPDLN-SEDSSEIKEWRWSVRKAKKMNQELHSQRCDIELKL 119
Query: 573 SV-ARRMKDEEGFYYPHNLDFRGRAYPMHPHLNHLSSDVCRGVLEFAEGRPLGKSGLRWL 631
SV ARRMKDEEGFYYPHNLDFRGRAYPMHPHLNHLSSD+CRG+LEFAEGRPLGKSGLRWL
Sbjct: 120 SVVARRMKDEEGFYYPHNLDFRGRAYPMHPHLNHLSSDLCRGILEFAEGRPLGKSGLRWL 179
Query: 632 KIHLANLFSGGVEKLSHDGRLAFVENHLYEIFDSAENPINGSRWWLTAEDPFQCLAACIN 691
+IHLANL+ GVEKLS+DGRLAFVE+H+ EI DSA+NP+ G+RWWLTAEDPFQCLAACIN
Sbjct: 180 RIHLANLYGSGVEKLSYDGRLAFVESHISEIIDSADNPLGGNRWWLTAEDPFQCLAACIN 239
Query: 692 LSEALKSSSPHSVISHLPIHQDGSCNGLQHYAALGRNTLEAAAVNLVAGEKPADVYSEIA 751
L+E LKSSSPH+VISHLP+HQDGSCNGLQHYAALGR+T+EAAAVNLVAGEKPADVYSEIA
Sbjct: 240 LAETLKSSSPHTVISHLPVHQDGSCNGLQHYAALGRDTVEAAAVNLVAGEKPADVYSEIA 299
Query: 752 VRVHEIMKRDSNKDPSKHPQALLAKILIDQVDRKLVKQTVMTSVYGVTFVGAREQIKRRL 811
R +I+ QV+RKLVKQTVMTSVYGVTFVGAREQIKRRL
Sbjct: 300 TRYADII----------------------QVNRKLVKQTVMTSVYGVTFVGAREQIKRRL 337
Query: 812 EEKGHITDDRQLFAAACYAAKVTLTALGEIFEAARSIMGWLGDCAK 857
+EKGHI+DD+ LF+A+CYAA+VTL ALGEIFEAAR M WLGDCAK
Sbjct: 338 QEKGHISDDQLLFSASCYAARVTLEALGEIFEAARGTMCWLGDCAK 383
>gi|224127286|ref|XP_002329240.1| predicted protein [Populus trichocarpa]
gi|222870694|gb|EEF07825.1| predicted protein [Populus trichocarpa]
Length = 528
Score = 642 bits (1657), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 313/491 (63%), Positives = 383/491 (78%), Gaps = 32/491 (6%)
Query: 453 YNKGGYLFLPSYVMRTHGSRKQQEALKSVTGNCMKKVFEALDTLGSTKWRVNKQVLSVLE 512
Y+KG +LFLPSYVMR HG+++Q+EA+K ++ VFEALDTLG+T+WRVNK+VLSV++
Sbjct: 1 YDKGAHLFLPSYVMRIHGAKQQREAVKRAPRKQLQAVFEALDTLGNTRWRVNKRVLSVVD 60
Query: 513 SIWVSGGNIAGLVDRNDVLIPEKPLSEDMTEVQKWKWSVRKAKKINQERHSQRCDTELKL 572
IW +GG +A LVD +DV +PEKP +ED ++KWKW +R KK N+ERH+QRCD ELKL
Sbjct: 61 RIWSNGGCLADLVDHSDVPLPEKPETEDEALLKKWKWKLRGVKKENKERHAQRCDIELKL 120
Query: 573 SVARRMKDEEGFYYPHNLDFRGRAYPMHPHLNHLSSDVCRGVLEFAEGRPLGKSGLRWLK 632
+VAR+MKDEEGFYYPHN+DFRGRAYPMHP+LNHL SD+CRG+LEFAEGRPLGKSGLRWLK
Sbjct: 121 AVARKMKDEEGFYYPHNIDFRGRAYPMHPYLNHLGSDLCRGILEFAEGRPLGKSGLRWLK 180
Query: 633 IHLANLFSGGVEKLSHDGRLAFVENHLYEIFDSAENPINGSRWWLTAEDPFQCLAACINL 692
IH+ANLF+GGV+KLS++GR+AF ENHL +IFDSA+ P++G RWWL AEDPFQ LA CINL
Sbjct: 181 IHIANLFAGGVDKLSYEGRIAFTENHLDDIFDSADKPLDGKRWWLHAEDPFQFLAVCINL 240
Query: 693 SEALKSSSPHSVISHLPIHQDGSCNGLQHYAALGRNTLEAAAVNLVAGEKPADVYSEIAV 752
+EAL+SSSP + ISH+P+HQDGSCNGLQHYAALGR+ L AAAVNLVAGEKPADVYS IA
Sbjct: 241 TEALRSSSPETYISHIPVHQDGSCNGLQHYAALGRDKLGAAAVNLVAGEKPADVYSGIAA 300
Query: 753 RVHEIMKRDSNKDPSKHPQALLAKILIDQVDRKLVKQTVMTSVYGVTFVGAREQIKRRLE 812
R+ M + + A+I+I + +K + +
Sbjct: 301 RLFNYM--------CVCVEWVRAQIIISYKNFFHMKNVISQA------------------ 334
Query: 813 EKGHITDDRQLFAAACYAAKVTLTALGEIFEAARSIMGWLGDCAKVIASENQPVRWTTPL 872
KG I +LF A + +VTLTALGE+FEAARSIM WLGDCAK+IASEN+PVRWTTPL
Sbjct: 335 SKGGI----KLFELAWF--QVTLTALGEMFEAARSIMNWLGDCAKIIASENEPVRWTTPL 388
Query: 873 GLPVVQPYCKNERHLIRTSLQVLALQREGNLVKIRKQRTAFPPNFVHSLDGSHMMMTAVA 932
GLPVVQPY K I+TSLQVL LQ+E + V +++QRTAF PNFVHSLD SHMMMTAVA
Sbjct: 389 GLPVVQPYRKLGTRSIKTSLQVLILQKETDKVMVQRQRTAFSPNFVHSLDSSHMMMTAVA 448
Query: 933 CRDAGLHFAGL 943
C+ AGL+FAG+
Sbjct: 449 CKGAGLNFAGV 459
>gi|145350935|ref|XP_001419848.1| predicted protein [Ostreococcus lucimarinus CCE9901]
gi|144580080|gb|ABO98141.1| predicted protein [Ostreococcus lucimarinus CCE9901]
Length = 922
Score = 561 bits (1446), Expect = e-157, Method: Compositional matrix adjust.
Identities = 324/805 (40%), Positives = 455/805 (56%), Gaps = 57/805 (7%)
Query: 180 RRQVKQETEAWERMVDEYKELEAKMIEKRLAPNLPHIKGLFLGWFGPLSEAIEREQKMQR 239
R+Q + E A ER V YKEL K + LP ++ L ++ PL EA+ EQ+ R
Sbjct: 63 RKQREAENLAVEREVMRYKELARKTFAAGIGAQLPVVQKLLASFYVPLVEALTEEQEKIR 122
Query: 240 TKK---QKAAYAPHIELLPADKVAVIVMHKMMGLVMAG--HEDRCVQVVQAAVHIGMAIE 294
+ Y ++ LL DK+AV+ +H + +M G + + + A +G A++
Sbjct: 123 GNVPGVDRRVYGHYLGLLEPDKLAVLTLHATLSTLMKGDGRNNGAAKFISVADQVGSAVQ 182
Query: 295 QEI---RIHSFLEKTKNYKRKKIIADTEEVLSKEKELLRKRVNSLIKSKRVMEAQKLLKN 351
E+ R+ S + K R+ + +TE + + + R+N + + ++ + + K+
Sbjct: 183 AEVNLERMRSAEKAAKEAFRRSRLVNTEGNVKEIDDAAEHRINLALDTSKMNTIKSVSKH 242
Query: 352 E----ETKPWGRDTQAKLGSRLVELLIETAYVQHPVNPADYSPPDVRPAFRHRFKTILKH 407
E WGR+ + K+G+ L+ L+ TA + P + PAF H +K
Sbjct: 243 ARQALENAEWGREIRLKIGTVLLTALMNTAKIGVPDEKGELL---TLPAFYHDYKE---- 295
Query: 408 PGQKTTKRYGVVECDPLVL-----EGLDRSAKHMLIP--YVPMLVPPKKWKGYNKGGYLF 460
YG++ + E + R+A L+P + PM++PP+ W+ YNKGGYL
Sbjct: 296 ------AGYGMLHWHDSIYRFINTETMTRAA---LVPVRHFPMVIPPRYWERYNKGGYLR 346
Query: 461 LPSYVMRTHGS-------------RKQQEALKSVTGNCMKKVFEALDTLGSTKWRVNKQV 507
+ MR S K +EA S + V +AL+ LG T W++N V
Sbjct: 347 ADNLCMRGKYSNEGPSRAQIAALEEKAREADASGEPVQYQPVLDALNALGQTAWQINTDV 406
Query: 508 LSVLESIWVSGGNIAGLVDRNDVLIPEKPLS--EDMTEVQKWKWSVRKAKKINQERHSQR 565
L ++E +W GG +A + R ++ +P P EV + SVRK KK N E HSQR
Sbjct: 407 LPIVEEVWARGGGVAEVPLRAELQLPRWPGGGLPGKGEVIDFLQSVRKTKKSNMELHSQR 466
Query: 566 CDTELKLSVARRMKDEEGFYYPHNLDFRGRAYPMHPHLNHLSSDVCRGVLEFAEGRPLGK 625
CD +KL VAR MK+E Y+PHNLDFRGRAY MH HLNH+ SD+CRG+L F E +PLG+
Sbjct: 467 CDFLIKLQVAREMKNEPNIYFPHNLDFRGRAYTMHVHLNHIGSDLCRGLLRFNEKKPLGE 526
Query: 626 SGLRWLKIHLANLFSGGVEKLSHDGRLAFVENHLYEIFDSAENPINGSRWWLTAEDPFQC 685
GLRW+ I A LF G +KL D R+ F+++ + ++ SA++P+ WW AE+P+QC
Sbjct: 527 RGLRWMHIQCATLFGNGADKLPMDERVQFIKDRIEDVRASAQDPLAKDAWWQEAEEPWQC 586
Query: 686 LAACINLSEALKSSSPHSVISHLPIHQDGSCNGLQHYAALGRNTLEAAAVNLVAGEKPAD 745
LA CI L +AL+ S P +S+LP+HQDGSCNGLQHYAALGR+ AVNLV ++ AD
Sbjct: 587 LATCIELDKALELSDPTQFMSNLPVHQDGSCNGLQHYAALGRDLHGGEAVNLVPADRGAD 646
Query: 746 VYSEIAVRVHEIMKRD----SNKDPSKHPQALLAKILIDQVDRKLVKQTVMTSVYGVTFV 801
VY+ IA + I+ D ++D A LA L +DRKLVKQTVMTSVYGVTF+
Sbjct: 647 VYTGIANVLKRIVAEDIKLIDSEDEEDVNNAKLAMSLAQHIDRKLVKQTVMTSVYGVTFI 706
Query: 802 GAREQIKRRLEEKGHITDDRQL-FAAACYAAKVTLTALGEIFEAARSIMGWLGDCAKVIA 860
GAR QI RL E+ + D+ L + + YAAK TL AL +F AR +MGWL CA +
Sbjct: 707 GARAQIYSRLREREAMEDNELLRYRVSNYAAKRTLDALNNMFSNARDVMGWLTTCATIAT 766
Query: 861 SENQPVRWTTPLGLPVVQPYCKNERHLIRTSLQVLALQ--REGNLVKIRKQRTAFPPNFV 918
S +PVRWTTPLGLPVVQPY +RT LQ +L+ E V KQR+AFPPN++
Sbjct: 767 SAGEPVRWTTPLGLPVVQPYHSQRTKRVRTILQSFSLKVHDEQQPVMKVKQRSAFPPNYI 826
Query: 919 HSLDGSHMMMTAVACRDAGLHFAGL 943
HS+D SHMM TA+AC DAGL FAG+
Sbjct: 827 HSIDSSHMMRTAIACVDAGLTFAGV 851
>gi|255080246|ref|XP_002503703.1| predicted protein [Micromonas sp. RCC299]
gi|226518970|gb|ACO64961.1| predicted protein [Micromonas sp. RCC299]
Length = 899
Score = 557 bits (1435), Expect = e-155, Method: Compositional matrix adjust.
Identities = 331/840 (39%), Positives = 476/840 (56%), Gaps = 73/840 (8%)
Query: 158 LYKRIKLQEYREMKKRKFNLLRRRQVKQETEAWERMVDEYKELEAKMIEKRLA-PNLPHI 216
LY + E E K L RQ + E A +R V+ YKE EA++ +R LP
Sbjct: 8 LYNKYSYVEGHEADP-KMRELEERQRRNEILAVDREVERYKE-EARITRRRGGGAELPLG 65
Query: 217 KGLFLGWFGPLSEAIEREQKMQRTKKQ---KAAYAPHIELLPADKVAVIVMHKMMGLVMA 273
+ L G+F PL+ AI EQ+ R K + ++ Y P + +L DK+AVI +H ++ +M
Sbjct: 66 RRLLQGFFAPLTSAIRLEQEHVRLKVRGVDRSNYGPFLLMLNPDKLAVITLHTVISQLMK 125
Query: 274 GHE---------DRCVQVVQAAVHIGMAIEQEIRIHSFLEKTKNYKRKKIIA-DTEEVLS 323
G + + V+A +G +++ E+ + ++ + K++ + + + V
Sbjct: 126 GEQMFGEPNEAQAGMCKFVRAVEMLGQSVQAEVNLARLRQRARLTKKRYLESKNGPHVHD 185
Query: 324 KEKELLRKRVNSLIKSKRVMEAQKLLKNEETKPWGRDTQAKLGSRLVELLIETAYVQHPV 383
+ ++ + + +L + V + N+ WG T++K+G+ LV+LL+ TA ++ P
Sbjct: 186 RFMKVNMESLKTLTTVRGVARLARTALNDSD--WGGVTRSKVGAALVKLLLTTARIRVP- 242
Query: 384 NPADYSPPDVR----PAFRHRFKTILKHPGQKTTKRYGVVECDPLVLEGLDRSA--KHML 437
PD PAF H + +KH RYGV+ +D A + L
Sbjct: 243 ------GPDGELIEVPAFYHDY---VKHKAH----RYGVISWHDAFFTFMDDEAMIRATL 289
Query: 438 IP--YVPMLVPPKKWKGYNKGGYLFLPSYVMR----THGSRKQQ-------EALKSVTGN 484
P Y+PM+ PP+ W +N GGYL S VMR THG K+Q ++ + G
Sbjct: 290 SPVRYMPMVTPPRPWTRFNAGGYLRTESIVMRGHYTTHGPSKRQMLALHGEQSGAELDGR 349
Query: 485 CMK--KVFEALDTLGSTKWRVNKQVLSVLESIWVSGGNIAGLVDRNDVLIPEKPLSE--- 539
K V +AL+ LG T WR+N+ VL V+E +W +GG A + R +V P P +
Sbjct: 350 AAKFQPVLDALNVLGRTAWRINEDVLRVMEEVWATGGGRADVPPRENVPDPTWPANPYGL 409
Query: 540 -------------DMTEVQKWKWSVRKAKKINQERHSQRCDTELKLSVARRMKDEEGFYY 586
+V + S+ + K+ N+E HSQRCD +KL VA+ M+DE+ Y+
Sbjct: 410 RRSRGQLAATALPSRQDVAGFIHSLNRTKQRNRELHSQRCDFLIKLQVAKEMRDEDRIYF 469
Query: 587 PHNLDFRGRAYPMHPHLNHLSSDVCRGVLEFAEGRPLGKSGLRWLKIHLANLFSGGVEKL 646
PHN+DFRGRAY MH HLNHL SD+CRG L FA+ RPLG GL WL I ANL++GGV+KL
Sbjct: 470 PHNIDFRGRAYTMHVHLNHLGSDICRGALVFADARPLGNDGLDWLYIQAANLYAGGVDKL 529
Query: 647 SHDGRLAFVENHLYEIFDSAENPIN-GSRWWLTAEDPFQCLAACINLSEALKSSSPHSVI 705
D R ++E+ ++ + SA +P+ +WL AEDP+QCLA C + A S P + +
Sbjct: 530 PMDERRQWIEDRVHLLEQSARDPLGPDGGFWLDAEDPWQCLACCFEIERARASGDPPAYM 589
Query: 706 SHLPIHQDGSCNGLQHYAALGRNTLEAAAVNLVAGEKPADVYSEIAVRVHEIMKRDSNKD 765
LP+HQDGSCNGLQHYAALGR+ VNL+ ++P DVY+ IA + I+ D+ K+
Sbjct: 590 CRLPVHQDGSCNGLQHYAALGRDEAGGEQVNLMPRDRPGDVYTGIANVLKRIVAEDA-KN 648
Query: 766 PSKHPQALLAKILIDQVDRKLVKQTVMTSVYGVTFVGAREQIKRRLEEKGHITDDRQLFA 825
P LA L VDRKLVKQTVMTSVYGVT +GAR+QI+ RL+E+G + D+ +
Sbjct: 649 PEDPETQALAIALAPHVDRKLVKQTVMTSVYGVTHIGARQQIQNRLKERGAVEDENLRYK 708
Query: 826 AACYAAKVTLTALGEIFEAARSIMGWLGDCAKVIASENQPVRWTTPLGLPVVQPYCKNER 885
A YAA+ TL AL +F AR +M WL +CA+V+ S+ + V WTTPLGLPVVQPY +
Sbjct: 709 MANYAARRTLDALANLFVNARDVMAWLAECARVVCSQGRAVEWTTPLGLPVVQPYRVKSQ 768
Query: 886 HLIRTSLQVLALQ--REGNLVKIRKQRTAFPPNFVHSLDGSHMMMTAVACRDAGLHFAGL 943
+IRT +Q LQ + N V KQR+AFPPNF+HS+D +HMM TA+AC +AGL FAG+
Sbjct: 769 RMIRTLVQSFTLQFDNDENSVAKAKQRSAFPPNFIHSIDSAHMMKTALACHEAGLTFAGV 828
>gi|290976388|ref|XP_002670922.1| predicted protein [Naegleria gruberi]
gi|284084486|gb|EFC38178.1| predicted protein [Naegleria gruberi]
Length = 933
Score = 553 bits (1426), Expect = e-154, Method: Compositional matrix adjust.
Identities = 313/752 (41%), Positives = 441/752 (58%), Gaps = 70/752 (9%)
Query: 213 LPHIKGLFLGWFGPLSEAIEREQK----------------MQRTKKQKAAYAPHIELLPA 256
LP K + L W+ PL++ I +Q T + A ++ + A
Sbjct: 162 LPPAKKIMLEWYEPLTKIIREKQDEVNFSCSKKKSSSTNTTTTTSQDNFAIPLYLTSISA 221
Query: 257 DKVAVIVMHKMMGLVMAGHEDRCVQVVQAAVHIGMAIEQEIRIHSFLEKTKNYKRKKIIA 316
+K+A+I +H+++ + E V + IG AI+ EI + L++T +K
Sbjct: 222 EKLAIITLHELLASCLK--ERGGSPVSSISYQIGDAIQAEINVEK-LKRTNYFK------ 272
Query: 317 DTEEVLSKEKELLRKRVNSLIKSKRVMEAQKLLKNEETKPWGRDTQAKLGSRLVELLIET 376
L + +++ +N + K LK E + ++ +LGS L++L + T
Sbjct: 273 -----LIIKNQMIYHNINKISK----------LKLNEYVTFTKEELVQLGSYLIQLALST 317
Query: 377 AYVQHPVNPADYSPPDVRPAFRHRFKTILKHPGQKTTKRYGVVECDP--LVLEGLDRSAK 434
A+V P +P + PAF HR T + +K GVVE D L L G + A+
Sbjct: 318 AHV-----PLISNPKETVPAFIHRNIT-------RNSKIIGVVEPDDNLLHLIGREHVAQ 365
Query: 435 HMLIP-YVPMLVPPKKWKGYNKGGYLFLPSYVMRTHGSRKQQEALKSVTGNCMKKVFEAL 493
+L P ++PMLVPP W GGY+ L +MRT GS Q LKS N + L
Sbjct: 366 EILYPNHLPMLVPPNPWTSSTAGGYIALKVLIMRTRGSHLQAYTLKSAELN---DLLSGL 422
Query: 494 DTLGSTKWRVNKQVLSVLESIWVSGGNIAGLVDRNDVLIPEKPLSEDMTEVQKWKWSVRK 553
+TL T+WR+N V + +W SGG + L R D +PE+P ++D +KWK +V K
Sbjct: 423 NTLNETRWRINPTVYETVLKVWNSGGGLGELPSRFDDTLPEEPETDDPEIKKKWKRTVEK 482
Query: 554 AKKINQERHSQRCDTELKLSVARRMKDEEGFYYPHNLDFRGRAYPMHPHLNHLSSDVCRG 613
K N+ HS RCD LKL VA KD FY+PHN+DFRGRAYP+ PHLNHL +D+ RG
Sbjct: 483 IKTHNRNLHSLRCDMLLKLKVAEDFKDNT-FYFPHNIDFRGRAYPIPPHLNHLGADINRG 541
Query: 614 VLEFAEGRPLGKSGLRWLKIHLANLFSGGVEKLSHDGRLAFVENHLYEIFDSAENPINGS 673
+L F +G P+GK G+ WLKIHLANL+ G +KL D R+ FV+ ++ EI DSA+ P+ G+
Sbjct: 542 LLTFEKGMPIGKRGIFWLKIHLANLY--GKDKLPFDERVQFVDEYINEIIDSADQPLEGN 599
Query: 674 RWWLTAEDPFQCLAACINLSEALKSSSPHSVISHLPIHQDGSCNGLQHYAALGRNTLEAA 733
RWWL +E+P+Q LAAC+ L+E L+S +P +SHLPI DGSCNGLQHYAALGR+ L A
Sbjct: 600 RWWLKSENPWQTLAACVELAECLRSPNPEEFLSHLPIQMDGSCNGLQHYAALGRDNLGAL 659
Query: 734 AVNLVAGEKPADVYSEIAVRVHEIMKRDSNKDPSKHPQALLAKILIDQVDRKLVKQTVMT 793
VNL+ KP DVY V V E++K+ +D + LAK+L V R +KQTVMT
Sbjct: 660 HVNLLPTSKPMDVY----VGVLEVVKKHIERDMKAGNK--LAKLLHGNVYRSTIKQTVMT 713
Query: 794 SVYGVTFVGAREQIKRRLEEKGHITDDRQLFAAACYAAKVTLTALGEIFEAARSIMGWLG 853
SVYGVTFVGAREQI++RL+EK + +D +FA A Y A +TL +LGE+F +A++IM WL
Sbjct: 714 SVYGVTFVGAREQIQKRLKEKKEVPED-DVFACASYLASITLKSLGEVFSSAQNIMEWLN 772
Query: 854 DCAKVIASENQPVRWTTPLGLPVVQPYCKNERHLIRTSLQVLALQREGNLVKIR--KQRT 911
DCA +I+S + PV W TPLGLPV+QPY +++T +Q + L + + + +Q++
Sbjct: 773 DCALLISSSDTPVSWITPLGLPVIQPYRSKRSKIVKTVMQSITLADSSDKLPVSRTRQKS 832
Query: 912 AFPPNFVHSLDGSHMMMTAVACRDAGLHFAGL 943
AFPPN+VHSLD SHM MTA AC+ G+ FA +
Sbjct: 833 AFPPNYVHSLDSSHMFMTASACQKEGIEFAAV 864
>gi|412990986|emb|CCO18358.1| predicted protein [Bathycoccus prasinos]
Length = 1109
Score = 550 bits (1417), Expect = e-153, Method: Compositional matrix adjust.
Identities = 329/880 (37%), Positives = 475/880 (53%), Gaps = 115/880 (13%)
Query: 174 KFNLLRRRQVKQETEAWERMVDEYKELEAKMIEKRLAPNLPHIKGLFLGWFGPLSEAIER 233
+F R RQ + E E+ + Y+E+ +M + NLP ++ L ++ PL +ER
Sbjct: 164 EFVARRERQRRVENESVNDEIKRYREMSEQMAQVGAGANLPAVRQLLTSFYEPLMVGVER 223
Query: 234 EQKMQRTKK---QKAAYAPHIELLPADKVAVIVMHKMMGLVMAG---------------- 274
EQ M + Y P+++LL ADK+AVI +H ++ ++M G
Sbjct: 224 EQNMISEGVPGFDRRVYGPYLQLLGADKIAVISLHTIISMLMRGVEKTRGDVFRDHSREH 283
Query: 275 HEDRCVQVVQAAVHIGMAIEQEIRIHSFLEKTK------------------NYKRKKIIA 316
E V+ V+ A +G IE E+ + + K + +++
Sbjct: 284 GEAGSVKFVRLASSLGRVIEAEVNLSRLQTREKLLSARYRAGLINMEDIVETFNQERHAG 343
Query: 317 DTEEVLSKEKE------------------------LLRKRVNSLIKSKRVM--EAQKLLK 350
+ E + +E+E +L++ +KS R + +A+K L
Sbjct: 344 ENEMIAEREREEKIANIDREIREKNLIKESDIRSTMLQRDSTKKLKSVRAVSEQAKKALD 403
Query: 351 NEETKPWGRDTQAKLGSRLVELLIETAYVQHPVNPADYSPPDVR-PAFRHRFK---TILK 406
N + WG K+G+ ++ ++++ ++ P + + PAF H + +
Sbjct: 404 NAD---WGSVLHLKVGAAIIAIVLDVCKIKVPGPETAETGEKIEVPAFYHDYSLEPNAYQ 460
Query: 407 HPGQKTT--KRYGVVECDPLVLEGLDRS----AKHMLIPYVPMLVPPKKWKGYNKGGYLF 460
QK + R G V + + A+ + + PM+VPP+ W+ YNKGGYL
Sbjct: 461 GWKQKASPNNRSGTVHWHDSFFRFVHSATLARARSAITRHKPMIVPPRPWESYNKGGYLN 520
Query: 461 LPSYVMRTHGSRK-----QQEALKSVTGNCMKKVFEALDTLGSTKWRVNKQVLSVLESIW 515
S VMR + SR Q + L G VF AL+ LGST W +N +L V+E +W
Sbjct: 521 SNSVVMRGNYSRDGPSDGQMKLLAERVGE-YDNVFGALNVLGSTAWVINTDILEVIEQVW 579
Query: 516 VS-------GGNIAGLVDRNDVLIPEKPLSE-----------------DMTEVQKWKWSV 551
GG IA + R ++ +P P SE EV ++ +
Sbjct: 580 REKKYAGGFGGGIANIPPRAELNLPNWPSSEFRLRRERNGPLYATALPSSREVGEFMRAF 639
Query: 552 RKAKKINQERHSQRCDTELKLSVARRMKDEEGFYYPHNLDFRGRAYPMHPHLNHLSSDVC 611
+AK+ N+E HSQRCD +KL VAR MK+EE Y+PHN+DFRGRAY MH HLNH+ SD C
Sbjct: 640 NRAKQTNRELHSQRCDFAIKLQVAREMKNEERIYFPHNVDFRGRAYTMHAHLNHIGSDFC 699
Query: 612 RGVLEFAEGRPLGKSGLRWLKIHLANLFSGGVEKLSHDGRLAFVENHLYEIFDSAENPIN 671
RG L+FA+ +PLG++GL WL I ANL+ GG +KL R+ F + +L +I SAE+P+
Sbjct: 700 RGTLKFADAKPLGENGLDWLFIQCANLYGGGADKLPLHQRVEFSKLNLEKIKKSAEDPLG 759
Query: 672 --GSRWWLTAEDPFQCLAACINLSEALKSSSPHSVISHLPIHQDGSCNGLQHYAALGRNT 729
GS WW A+DP+QCLA C+ + +A+ S P + +LP+HQDGSCNGLQHYAALGR+
Sbjct: 760 PEGS-WWQDADDPWQCLATCMEIIKAINSKDPAKYMCNLPVHQDGSCNGLQHYAALGRDF 818
Query: 730 LEAAAVNLVAGEKPADVYSEIAVRVHEIMKRD----SNKDPSKHPQALLAKILIDQVDRK 785
AVNLV ++ ADVY+ IA + +I+++D KD + LAK+LIDQVDRK
Sbjct: 819 AGGRAVNLVPADRGADVYTGIANVLRDIVQKDIENCDYKDEESVERMKLAKLLIDQVDRK 878
Query: 786 LVKQTVMTSVYGVTFVGAREQIKRRLEEKGHITDDRQLFAAACYAAKVTLTALGEIFEAA 845
LVKQTVMTSVYGVTFVGAR QI RL+E+ + + A YAAK TL AL ++F+ A
Sbjct: 879 LVKQTVMTSVYGVTFVGARMQISARLKERVGFESESVRYRVAAYAAKRTLDALNDMFQNA 938
Query: 846 RSIMGWLGDCAKVIASENQPVRWTTPLGLPVVQPYCKNERHLIRTSLQVLALQREGNLVK 905
R +MGWL CA V+ N PV+WTTPLGLPV+QPY + +RT LQ L+ E K
Sbjct: 939 REVMGWLTHCASVVTKVNAPVQWTTPLGLPVLQPYRNQTQKSVRTLLQTFVLRSEDEKQK 998
Query: 906 IR--KQRTAFPPNFVHSLDGSHMMMTAVACRDAGLHFAGL 943
+ KQR+AFPPN++HS+D +HMMMTA+ C A + FAG+
Sbjct: 999 VNKSKQRSAFPPNYIHSIDSTHMMMTALECSRANITFAGV 1038
>gi|75706720|gb|ABA25911.1| putative mitochondrial T-odd phage-like single-subunit RNA
polymerase [Naegleria sp. TES-2005]
Length = 968
Score = 540 bits (1391), Expect = e-150, Method: Compositional matrix adjust.
Identities = 308/794 (38%), Positives = 460/794 (57%), Gaps = 78/794 (9%)
Query: 177 LLRRRQVKQETEAWERMVDEYKELEAKMIEKRLAPNLPHIKGLFLGWFGPLSEAI-EREQ 235
LL+++++ ET + + + Y++ + LP K + L W+ PL++ I E++
Sbjct: 157 LLKQKEL--ETRSMDIAKERYRKDLKSATNRNQGACLPPAKKILLEWYEPLTKLIREKQD 214
Query: 236 KMQRTKKQKAAYAP---------------------HIELLPADKVAVIVMHKMMGLVMAG 274
++ + K+K+ + H+ + A+K+A+I +H+++ +
Sbjct: 215 EVNFSAKKKSTISAADSASAANTTSGAVDHFSIPLHLTSISAEKLAIITLHELLASCLRE 274
Query: 275 HEDRCVQVVQAAVHIGMAIEQEIRIHSFLEKTKNYKRKKIIADTEEVLSKEKELLRKRVN 334
V + V G AI+ EI + L++T ++K L + +++ +N
Sbjct: 275 RAGSAVSSLSYVV--GDAIQAEINMEK-LKRTNHFK-----------LILKNQMVYHNIN 320
Query: 335 SLIKSKRVMEAQKLLKNEETKPWGRDTQAKLGSRLVELLIETAYVQHPVNPADYSPPDVR 394
L K LK E + ++ +LGS L++L ++TA V P +P +
Sbjct: 321 KLSK----------LKLNEYVSFSKEELIRLGSYLIQLTLDTAKV-----PLVDNPKESV 365
Query: 395 PAFRHRFKTILKHPGQKTTKRYGVVECDPLVLE--GLDRSAKHMLIP-YVPMLVPPKKWK 451
PAF H+ + + K G++E D +++ G + + +L P ++PMLVPP W
Sbjct: 366 PAFIHKNVS-------RAGKVIGMIEPDENLIQLVGREHLTQEILFPNHLPMLVPPNPWT 418
Query: 452 GYNKGGYLFLPSYVMRTHGSRKQQEALKSVTGNCMKKVFEALDTLGSTKWRVNKQVLSVL 511
GGY+ L +MRT GS Q LKS + + L+TL +KW VN +V +
Sbjct: 419 SSVSGGYIALKVMIMRTRGSHLQSYILKSAE---LTDLLSGLNTLNESKWIVNPKVYETV 475
Query: 512 ESIWVSGGNIAGLVDRNDVLIPEKPLSEDMTEVQKWKWSVRKAKKINQERHSQRCDTELK 571
+W GG + L R D +PE+P ++D +KWK + K K+ N+ HS RCD LK
Sbjct: 476 LRVWNEGGGLGELPSRFDDALPEEPETDDPEVKKKWKRTCEKIKQHNRNLHSLRCDMLLK 535
Query: 572 LSVARRMKDEEGFYYPHNLDFRGRAYPMHPHLNHLSSDVCRGVLEFAEGRPLGKSGLRWL 631
L VA KD FY+PHN+DFRGRAYP+ PHLNHL +D+ RG+L F +G P+GK G+ WL
Sbjct: 536 LKVAEDFKDN-AFYFPHNIDFRGRAYPIPPHLNHLGADINRGLLTFEKGMPIGKRGIFWL 594
Query: 632 KIHLANLFSGGVEKLSHDGRLAFVENHLYEIFDSAENPINGSRWWLTAEDPFQCLAACIN 691
KIHLANL+ G +KL D R+ F++ ++ E+FDSA+ P++G+RWWL +E+P+Q LAAC+
Sbjct: 595 KIHLANLY--GKDKLPFDERVQFIDQNMAEVFDSADVPLDGNRWWLQSENPWQTLAACVE 652
Query: 692 LSEALKSSSPHSVISHLPIHQDGSCNGLQHYAALGRNTLEAAAVNLVAGEKPADVYSEIA 751
L+ L+S P IS+LPI DGSCNGLQHYAALGR+ L A VNL+ KP DVY
Sbjct: 653 LTNCLRSEKPEEYISNLPIQMDGSCNGLQHYAALGRDNLGALHVNLLPTSKPMDVY---- 708
Query: 752 VRVHEIMKRDSNKDPSKHPQALLAKILIDQVDRKLVKQTVMTSVYGVTFVGAREQIKRRL 811
V V E++K+ +D + LAK+L V R +KQTVMTSVYGVTFVGAREQI++RL
Sbjct: 709 VGVLEVVKKHIERDMKAGNK--LAKLLHGNVYRSTIKQTVMTSVYGVTFVGAREQIQKRL 766
Query: 812 EEKGHITDDRQLFAAACYAAKVTLTALGEIFEAARSIMGWLGDCAKVIASENQPVRWTTP 871
+EK + +D +FA A Y A +TL +LGE+F +A++IM WL DCA +I+S + PV W TP
Sbjct: 767 KEKKEVPED-DVFACASYLASITLKSLGEVFSSAQNIMEWLNDCALLISSSDTPVSWITP 825
Query: 872 LGLPVVQPYCKNERHLIRTSLQVLALQREGNLVKIRK--QRTAFPPNFVHSLDGSHMMMT 929
LGLPV+QPY +++T +Q + L + + + K Q++AFPPN+VHSLD SHM MT
Sbjct: 826 LGLPVIQPYRSKRTKIVKTVMQSVTLFDSSDKLPVSKTRQKSAFPPNYVHSLDSSHMFMT 885
Query: 930 AVACRDAGLHFAGL 943
A AC G+ FA +
Sbjct: 886 ATACHKEGIEFAAV 899
>gi|308808155|ref|XP_003081388.1| phage-type RNA polymerase (ISS) [Ostreococcus tauri]
gi|116059850|emb|CAL55557.1| phage-type RNA polymerase (ISS) [Ostreococcus tauri]
Length = 973
Score = 536 bits (1380), Expect = e-149, Method: Compositional matrix adjust.
Identities = 323/841 (38%), Positives = 465/841 (55%), Gaps = 94/841 (11%)
Query: 180 RRQVKQETEAWERMVDEYKELEAKMIEKRLAPNLPHIKGLFLGWFGPLSEAIEREQKMQR 239
R+Q + E A ER V YKE K + LP ++ L ++ PL +AI+ E + +
Sbjct: 79 RKQREAENLACEREVARYKEFARKTFAAGIGAQLPVVQKLLASFYVPLVDAIKEEHEKIK 138
Query: 240 TKK---QKAAYAPHIELLPADKVAVIVMHKMMGLVMAGH-----------EDRCV----Q 281
+ + Y ++ LL +K+AV+ +H + +M G +D +
Sbjct: 139 SNVPGVDRRVYGHYLALLEPEKLAVLTLHTTLSTLMKGDLRLDVPIFRGDDDTAASGSAK 198
Query: 282 VVQAAVHIGMAIEQEIRIHSFLEKTK----NYKRKK----IIADTEEVLSKE-KELLRKR 332
+ A +G+ ++ E+ + K YK+ + + AD SK+ +EL+ +R
Sbjct: 199 FITVAEQVGIVVQAEVNLGRMRAAEKIAKEAYKKSRQQTTLTADGGNAASKDVEELVEQR 258
Query: 333 VNSLIKSKRVMEAQKLLKNE----ETKPWGRDTQAKLGSRLVELLIETAYVQHPVNPADY 388
+N + + ++ + + K+ E WGR+ + K+G+ L+ L+ TA + P
Sbjct: 259 INLTLDTSKMNTIKSVSKHARNALENAEWGREIRVKVGTVLLNALMNTAKIGVPEENGGV 318
Query: 389 SPPDVRPAFRHRFKTILKHPGQKTTKRYGVVECDPLVL-----EGLDRSAKHMLIP--YV 441
PAF H ++ YG++ + E + R+A L+P +
Sbjct: 319 L---TLPAFYHDYRE----------GGYGMLHWHDSIYRFINTETMTRAA---LVPVKHF 362
Query: 442 PMLVPPKKWKGYNKGGYLFLPSYVMRTH-----GSRKQQEALKSVTGNCMKK-------- 488
PM+VPP++W YN GGYL + MR SR Q +AL++ K
Sbjct: 363 PMIVPPREWVRYNNGGYLRANTLCMRGKYSNEGPSRAQVQALEAKAREAELKNEPVLYQP 422
Query: 489 VFEALDTLGSTKWRVNKQVLSVLESIWVSGGNIAGLVDRNDVLIPEKP-----LSEDMT- 542
V +AL+ LG T W+VN VL ++E +W GG IA + R ++ +P P L D
Sbjct: 423 VLDALNALGRTPWQVNTDVLPIVEEVWARGGGIAEVPLRAELQLPRWPGGSYALRSDKNR 482
Query: 543 ------------EVQKWKWSVRKAKKINQERHSQRCDTELKLSVARRMKDEEGFYYPHNL 590
EV ++ SVRK KK N E HSQRCD +KL VAR MK+E Y+PHNL
Sbjct: 483 FQLLASGLPGKGEVIEFLQSVRKTKKSNMELHSQRCDFLIKLQVAREMKNEPNIYFPHNL 542
Query: 591 DFRGRAYPMHPHLNHLSSDVCRGVLEFAEGRPLGKSGLRWLKIHLANLFSGGVEKLSHDG 650
DFRGRAY MH HLNH+ SD+CRG+L F+E +PLG+ GLRW+ I A LF G +KL D
Sbjct: 543 DFRGRAYTMHVHLNHIGSDLCRGLLRFSEKKPLGERGLRWMYIQCATLFGNGADKLPMDE 602
Query: 651 RLAFVENHLYEIFDSAENPINGSRWWLTAEDPFQCLAACINLSEALKSSSPHSVISHLPI 710
R+ F+ + + ++ SA++P+ WW AE+P+QCLA CI L +AL+ P +S+LP+
Sbjct: 603 RVQFIVDQIEQVRASAQDPLAKGAWWQDAEEPWQCLATCIELDKALELEDPTQFLSNLPV 662
Query: 711 HQDGSCNGLQHYAALGRNTLEAAAVNLVAGEKPADVYSEIAVRVHEIMKRD----SNKDP 766
HQDGSCNGLQHYAALGR+ AVNLV ++ ADVY+ IA + I+ D + +
Sbjct: 663 HQDGSCNGLQHYAALGRDLHGGEAVNLVPADRGADVYTGIANVLKRIVADDIKLIDSDNE 722
Query: 767 SKHPQALLAKILIDQVDRKLVKQTVMTSVYGVTFVGAREQIKRRLEEKGHITDDRQL-FA 825
A LA L +DRKLVKQTVMTSVYGVTF+GAR QI RL E+ + D+ L +
Sbjct: 723 EDVANAKLAMALAHHIDRKLVKQTVMTSVYGVTFIGARAQIYSRLREREVMEDNELLRYR 782
Query: 826 AACYAAKVTLTALGEIFEAARSIMGWLGDCAKVIASENQPVRWTTPLGLPVVQPYCKNER 885
+ YAA+ TL AL +F AR +MGWL DCA + + +PVRWTTPLGLPVVQPY +
Sbjct: 783 VSTYAARRTLDALNNMFSNARDVMGWLTDCAAIATATGEPVRWTTPLGLPVVQPYHRKST 842
Query: 886 HLIRTSLQVLALQREGN---LVKIRKQRTAFPPNFVHSLDGSHMMMTAVACRDAGLHFAG 942
+RT LQ ++ + + ++K+ KQR+AFPPN++HS+D SHMM TAVAC DAGL FAG
Sbjct: 843 KRVRTILQSFTIKTDDDKQPVMKV-KQRSAFPPNYIHSIDSSHMMKTAVACVDAGLTFAG 901
Query: 943 L 943
+
Sbjct: 902 V 902
>gi|81373966|gb|ABB71761.1| mitochondrial DNA-directed RNA polymerase [Physarum polycephalum]
Length = 997
Score = 534 bits (1376), Expect = e-149, Method: Compositional matrix adjust.
Identities = 299/791 (37%), Positives = 461/791 (58%), Gaps = 72/791 (9%)
Query: 182 QVKQETEAWERMVDEYKELEAKMIEKRLAPNLPHIKGLFLGWFGPLSEAIEREQKMQRTK 241
Q E A ++ + Y++ ++ R +L + + W+GP ++I + +
Sbjct: 178 QADLELNAIDQATEYYRKALDGILRARQGASLGPTRRIIDSWYGPFRDSINAAVRKMSAR 237
Query: 242 KQKAAYAPHIELLPADKVAVIVMHKMMGLVMAGHEDRCVQVVQAAVHIGMAIEQEIRIHS 301
+ +++LL +DK+ VI +H+ +G+++A E V +Q A +G A++ E+
Sbjct: 238 ASSHSLVANLKLLSSDKLPVITLHQTLGMLLANTE--GVPFMQVAFAVGRAVQAEV---- 291
Query: 302 FLEKTKNYKRKKIIADTEEVLSKEKELLRKRVNSLIKSKRVM-------EAQKLLKNEET 354
N++R K +++K+ R SL+KSK + +A+ LK +
Sbjct: 292 ------NFERMK---------AEDKQAFR----SLLKSKSGITVTLVNIKAKYTLKKHD- 331
Query: 355 KPWGRDTQAKLGSRLVELLIETAYVQHPVNPA--------------DYSPPDVRPAFRHR 400
W T +LG+ L++ L+ +A ++ V+ + + AF H
Sbjct: 332 --WDSKTIVQLGAFLLKHLMLSAKIEKNVDKVLSKANNLAVSSSERQLADDEYVSAFVHY 389
Query: 401 FKTILKHPGQKTTKRYGVVECDPLVLEGLDRS--AKHMLIP-YVPMLVPPKKWKGYNKGG 457
+K + TT+R G+++C + + +D K +L +PM+V P W GG
Sbjct: 390 YKFYRQ---GSTTRRQGLLKCHENIFKYVDDGHVIKEVLDARLLPMVVKPVPWVSPTVGG 446
Query: 458 YLFLPSYVMRTHGSRKQQEALKSVTGNCMKKVFEALDTLGSTKWRVNKQVLSVLESIWVS 517
YL++PS +MR +++ Q S+ + VF AL+ LG T WRVN++V +++ +W
Sbjct: 447 YLYVPSVLMR---AQEHQAQYASLWNADLTTVFAALNALGETGWRVNEEVYHIVKKVWDD 503
Query: 518 GGNIAGLVDRNDVLIPEKPLSEDMTEVQK--WKWSVRKAKKINQERHSQRCDTELKLSVA 575
GG +A L R D+ P+ P D + K WK + RK +++N + +S RCDT KLSVA
Sbjct: 504 GGGLAALPTRTDITFPDPPDDLDTNDESKRTWKKTERKIRQLNNDLNSLRCDTTYKLSVA 563
Query: 576 RRMKDEEGFYYPHNLDFRGRAYPMHPHLNHLSSDVCRGVLEFAEGRPLGKSGLRWLKIHL 635
+ + FY PHN+DFRGRAYP+ PHLN L SD+CRG+L F E +PLG +GLRWLKIHL
Sbjct: 564 ETLLHMD-FYLPHNVDFRGRAYPIPPHLNQLGSDMCRGLLVFKEKKPLGPTGLRWLKIHL 622
Query: 636 ANLFSGGVEKLSHDGRLAFVENHLYEIFDSAENPINGSRWWLTAEDPFQCLAACINLSEA 695
ANL+ GV+K+ D R+ FV+ ++ ++FDSA++P++G +WW+ A+DP+QCL C L++A
Sbjct: 623 ANLY--GVDKVPFDARVNFVDKNIDKVFDSADHPLDGEQWWVGADDPWQCLGTCFELAKA 680
Query: 696 LKSSSPHSVISHLPIHQDGSCNGLQHYAALGRNTLEAAAVNLVAGEKPADVYSEIAVRVH 755
L+S +P +S +P+HQDGSCNGLQHYAALG + + VNLV + P DVYS +A V
Sbjct: 681 LRSPNPEEFLSCMPVHQDGSCNGLQHYAALGGDEIGGRKVNLVPSDAPQDVYSGVATVVA 740
Query: 756 EIMKRDSNKDPSKHPQALLAKILIDQVDRKLVKQTVMTSVYGVTFVGAREQIKRRLEEKG 815
+ + D+ + H L K+L ++DRK+VKQTVMTSVYGVT++GAR QI L +K
Sbjct: 741 KRVHEDA---IAGHE---LGKLLDGKLDRKVVKQTVMTSVYGVTYIGARLQIHNALSDKD 794
Query: 816 -HITDDRQLFAAACYAAKVTLTALGEIFEAARSIMGWLGDCAKVIASENQPVRWTTPLGL 874
DD QL+ A+ Y T AL ++F AR+IM WL DCA++IA PV W TPLGL
Sbjct: 795 IEWRDDDQLYHASAYITNHTFEALNQMFLGARNIMKWLADCARIIAKNKDPVAWVTPLGL 854
Query: 875 PVVQPYCKNERHLIRTSLQ--VLALQREGNLVKIRKQRTAFPPNFVHSLDGSHMMMTAVA 932
P+VQPY KN++ L++T +Q +L+ R+ V KQR+AFPPN+VHSLD HMM+TA+
Sbjct: 855 PIVQPYVKNQQFLVKTVVQKVLLSDPRKDLPVNTIKQRSAFPPNYVHSLDSCHMMLTAIE 914
Query: 933 CRDAGLHFAGL 943
C+ G+ + +
Sbjct: 915 CQKKGISYTSV 925
>gi|440790817|gb|ELR12085.1| DNAdependent RNA polymerase [Acanthamoeba castellanii str. Neff]
Length = 965
Score = 533 bits (1372), Expect = e-148, Method: Compositional matrix adjust.
Identities = 318/804 (39%), Positives = 450/804 (55%), Gaps = 87/804 (10%)
Query: 186 ETEAWERMVDEYKELEAKMIEKRLAPNLPHIKGLFLGWFGPLSEAIEREQK--MQRTKKQ 243
ET++ E+ V+ YK++ + + LA L + WF PL AI EQ + +T
Sbjct: 134 ETKSVEKAVERYKKISKSLKQLGLAFELLQGNQILGHWFEPLCAAIRAEQNAALLKTSAA 193
Query: 244 KAAYAP-----------------HIELLPADKVAVIVMHKMMGLVMAGHEDRCVQVVQAA 286
AA +P ++ +P +K+AVI +H+ M ++ H
Sbjct: 194 DAAASPTKGKKKTQKAEDRELSAYLVTIPPEKLAVITIHETMCEILKSHHPEGAPFAALV 253
Query: 287 VHIGMAIEQEIRIHSFLEKTKNYKRKKIIADTEEVLSKEKELLRKRVNSLIKSKRVMEAQ 346
V +G A+E E N +R ++ ++ ++++ SLI+++ +
Sbjct: 254 VAVGRAVEYEY----------NCERLAKEGWKPQLRNRSATPTKQQICSLIRTQSRAQF- 302
Query: 347 KLLKNEETKPWGRDTQAKLGSRLVELLIETAYVQHPVNPADY-----SP-------PDVR 394
E WG AK+GS LV+ L+ TA + AD SP P R
Sbjct: 303 ------EDASWGAALHAKIGSLLVQQLLGTATIARKAEEADVAAAQSSPARLLSGAPRKR 356
Query: 395 PAFRHRFKTILK-----HPGQKTTKRYGVVECDPLVLEGLDRSAKH---MLIPYVPMLVP 446
PAF + + +L+ H K G + C VL ++ M Y+PMLV
Sbjct: 357 PAFVTKEEALLEPAFNHHQAMLRGKLTGFLGCHEQVLALMEHEEVQRGVMQARYMPMLVE 416
Query: 447 PKKWKGYNKGGYLFLPSYVMRTHGSRKQQEALKSVTGNCMKKVFEALDTLGSTKWRVNKQ 506
P+ W N+GGYL + V+R GSR Q E L+S + M KV+E L+ L ST WR+N +
Sbjct: 417 PQPWVAPNQGGYLVARTQVLRAKGSRMQTEVLRSAS---MDKVYECLNLLSSTPWRINNR 473
Query: 507 VLSVLESIWVSGGNIAGLVDRNDV--LIPEKPLSEDMTEVQKWKWSVRKAKKINQERHSQ 564
+ V+ W +GG IA L R ++ L P D+ QK+ +KAK N HS
Sbjct: 474 MHEVICEAWDNGGGIADLPSRTNLPELEPPADYYSDLEVKQKFDRERKKAKIANYNLHSL 533
Query: 565 RCDTELKLSVARRMKDEEGFYYPHNLDFRGRAYPMHPHLNHLSSDVCRGVLEFAEGRPLG 624
RCD VA+ +D FYYPHN+DFRGR YP+ PHLNHL D+CRG+L FAEG+PLG
Sbjct: 534 RCD------VAKECQDRT-FYYPHNMDFRGRTYPIPPHLNHLGQDLCRGLLTFAEGKPLG 586
Query: 625 KSGLRWLKIHLANLFSGGVEKLSHDGRLAFVENHLYEIFDSAENPINGSRWWLTAEDPFQ 684
+ LK+HLAN+F G +K++ + R+ FVEN++ I DSA NP+ G RWWL A+ P+Q
Sbjct: 587 E-----LKVHLANVF--GNDKITFEDRVRFVENNMEHIMDSASNPLGGQRWWLKADKPWQ 639
Query: 685 CLAACINLSEALKSSSPHSVISHLPIHQDGSCNGLQHYAALGRNTLEAAAVNLVAGEKPA 744
CLAA I L A S P + +S LPIHQDGSCNGLQHYAALG + + A VNL+ E+P
Sbjct: 640 CLAASIELINAYNSGQPETYVSTLPIHQDGSCNGLQHYAALGGDEMGARQVNLLPSERPQ 699
Query: 745 DVYSEIAVRVHEIMKRDSNKDPSKHPQALLAKILIDQVDRKLVKQTVMTSVYGVTFVGAR 804
DVYS + E++ R D + + +A+ L+ +VDRK++KQTVMTSVYGVTF+GAR
Sbjct: 700 DVYSGVV----ELVVRRLEDDAANGVE--IAQRLLGKVDRKVIKQTVMTSVYGVTFIGAR 753
Query: 805 EQIKRRLEEKGHITDDRQLFAAACYAAKVTLTALGEIFEAARSIMGWLGDCAKVIASENQ 864
+QI+ L++KG ++DD +F A+ Y A T +++ E+F AR IM WL DCA +IA + +
Sbjct: 754 QQIENALKDKGKVSDD-DMFLASRYLATSTFSSIKEMFSGAREIMTWLSDCATLIAKQGK 812
Query: 865 PVRWTTPLGLPVVQPYCK--NERHLIRTSLQVLALQREGN---LVKIRKQRTAFPPNFVH 919
PV W TP+GLPVVQPY + + T+LQ + L +E N V RKQRTAFPPN+VH
Sbjct: 813 PVTWVTPMGLPVVQPYRTKGKQTQTVVTALQNVMLVKEENDSLPVNTRKQRTAFPPNYVH 872
Query: 920 SLDGSHMMMTAVACRDAGLHFAGL 943
SLD +HMM+TA+ C +AGL +A +
Sbjct: 873 SLDSTHMMLTALQCHEAGLTYASV 896
>gi|303279985|ref|XP_003059285.1| predicted protein [Micromonas pusilla CCMP1545]
gi|226459121|gb|EEH56417.1| predicted protein [Micromonas pusilla CCMP1545]
Length = 838
Score = 521 bits (1342), Expect = e-145, Method: Compositional matrix adjust.
Identities = 304/757 (40%), Positives = 446/757 (58%), Gaps = 59/757 (7%)
Query: 226 PLSEAIEREQKMQRTK---KQKAAYAPHIELLPADKVAVIVMHKMMGLVMAGHEDRC--- 279
PLS AIE+EQ R K + Y P + +L DK+AVI +H ++ +M G +DR
Sbjct: 31 PLSRAIEKEQAEIRKKVPGADRTNYGPFMLMLNPDKLAVITLHAVISQLMMG-DDRVKFS 89
Query: 280 --------VQVVQAAVHIGMAIEQEIRIHSFLEKTKNYKRKKIIADTEEVLSKEKELLRK 331
+ V+ +G A++ E+ + S L++ + K + + K
Sbjct: 90 GDNGQVGKSKFVRVVERLGEAVQAEVNL-SRLKQRGKVRPKDPSERERRFREETAGVSAK 148
Query: 332 RVNSLIKSKRVME-AQKLLKNEETKPWGRDTQAKLGSRLVELLIETAYVQHPVNPADYSP 390
++ L + V + A++ L + + WG + KLGS L +LL+ETA ++ P +P +
Sbjct: 149 SLSKLTTVRSVAKFARRALNDSD---WGMTARVKLGSVLAKLLVETAKIEVP-DP-ESGE 203
Query: 391 PDVRPAFRHRFKTILKHPGQKTTKRYGVVECDPLVLEGLD----RSAKHMLIPYVPMLVP 446
+++PAF H ++ + + +RYG+V P + ++ R A+ L+ Y+PM+ P
Sbjct: 204 LEIKPAFEHHYEYVNRQ------QRYGMVSWHPAFFDYIEHEDMRHAQMSLVRYMPMVTP 257
Query: 447 PKKWKGYNKGGYLFLPSYVMRTHGSR-----KQQEAL------KSVTGNC--MKKVFEAL 493
P+ W +++GGYL ++VMR + +R Q AL G C + V +AL
Sbjct: 258 PRPWSRFDQGGYLCSETFVMRGNYTRLGPSWGQIMALLGEQKRSDSDGECASYQPVLDAL 317
Query: 494 DTLGSTKWRVNKQVLSVLESIWVSGGNIAGLVDRNDVLIPEKPLSEDMTEVQKWKWSVRK 553
+ LG T W VN++ + V++ +W GG IAG+ R V ++P+ D E K V
Sbjct: 318 NVLGKTPWVVNERTVDVMQKVWDDGGGIAGVPPRRTV---DEPVWPDPGEYVNAKVRV-- 372
Query: 554 AKKINQERHSQRCDTELKLSVARRMKDEEGFYYPHNLDFRGRAYPMHPHLNHLSSDVCRG 613
K+ N+E HSQRCD +KL VA+ M+DEE ++PHN+DFRGRAY MH HLNH+ SDVCRG
Sbjct: 373 -KRENRELHSQRCDFLIKLKVAQEMRDEEKIFFPHNIDFRGRAYTMHAHLNHIGSDVCRG 431
Query: 614 VLEFAEGRPLGKSGLRWLKIHLANLFS-GGVEKLSHDGRLAFVENHLYEIFDSAENPING 672
L F E RPLG++GL WL + ANL++ GGV+KL D R +++ L I SA +P+
Sbjct: 432 ALLFQEARPLGENGLDWLYVQAANLYAAGGVDKLPLDERREWMKTRLDRIKASARDPLCA 491
Query: 673 SR----WWLTAEDPFQCLAACINLSEALKSSSPHSVISHLPIHQDGSCNGLQHYAALGRN 728
+WL AE+P+QCLA I ++ A+ S P S LP+HQDGSCNGLQHYAALGR+
Sbjct: 492 DDANCAFWLEAENPWQCLATFIEIAAAVDSGDPASYACRLPVHQDGSCNGLQHYAALGRD 551
Query: 729 TLEAAAVNLVAGEKPADVYSEIAVRVHEIMKRDSNKDPSKHPQALLAKILIDQVDRKLVK 788
VNL + P DVY+ +A + ++ D+ D S A A L +DRKLVK
Sbjct: 552 IGGGEQVNLTPRDSPGDVYTGVANVLKRMVAEDA-ADASDPETAATAAALAPHIDRKLVK 610
Query: 789 QTVMTSVYGVTFVGAREQIKRRLEEKGHITDDRQLFAAACYAAKVTLTALGEIFEAARSI 848
QTVMTSVYGVT VGAR+QI+ RL E+G I D+ + A YA++ TL AL +F AR +
Sbjct: 611 QTVMTSVYGVTHVGARQQIQSRLRERGAIEDESLRYRTANYASRRTLDALSNLFVNAREV 670
Query: 849 MGWLGDCAKVIASENQPVRWTTPLGLPVVQPYCKNERHLIRTSLQVLALQ--REGNLVKI 906
M WLG+CA+V++ +PV+WTTP+GLPVVQPY R ++RT +Q LQ EG+ ++
Sbjct: 671 MSWLGECARVVSKGGKPVQWTTPMGLPVVQPYKAPSRKVVRTIVQSFVLQYDSEGSAIQK 730
Query: 907 RKQRTAFPPNFVHSLDGSHMMMTAVACRDAGLHFAGL 943
+KQ++AFPPNF+HS+D +HMM TA+AC+ + FAG+
Sbjct: 731 QKQKSAFPPNFIHSVDSAHMMKTALACQRRDIAFAGV 767
>gi|89148146|gb|ABD62816.1| mitochondrial single-subunit RNA polymerase [Polysphondylium
pallidum]
Length = 862
Score = 509 bits (1312), Expect = e-141, Method: Compositional matrix adjust.
Identities = 301/823 (36%), Positives = 470/823 (57%), Gaps = 92/823 (11%)
Query: 163 KLQEYREMKKRKFNLLRRRQVKQETEAWERMVDE----YKEL--EAKMIEKRLAPNLPHI 216
+LQ+ +E + K+ L + +K ET+ + D Y++L + MI++ + L I
Sbjct: 21 ELQKQKEEESAKYKELYEK-IKLETDFEISVTDTARKAYRQLLNDTSMIQR--STGLKSI 77
Query: 217 KGLFLGWFGPLSEAIEREQKM-----------QRTKKQKAAYAP------HIELL---PA 256
K + W+ PL + +E K + + + A P H+E+L P
Sbjct: 78 KNVMFQWYDPLIKHTTQELKSFQQANASVLLSEDPEAEAEALNPLSRVPSHVEVLTRLPM 137
Query: 257 DKVAVIVMHKMMGLVMAGHEDRCVQVVQAAVHIGMAIEQEIRIHSFLEKTKNYKRKKIIA 316
K+ +I +++M+ +++ + R + +IG ++ E ++ L+K + K+++
Sbjct: 138 KKLCLIALNQMVSEILSDPQ-RGTIMTSIVENIGESVLAEYQMQ-LLKKYDRLQYKRLM- 194
Query: 317 DTEEVLSKEKELLRKRVNSLIKSKRVME-----AQKLLKNEETKPWGRDTQAKLGSRLVE 371
K N + + R ++ A L+ E DT K+GS +V+
Sbjct: 195 --------------KPFNGAVATVRTIQNYMRRAHNNLEQES------DTITKVGSFMVK 234
Query: 372 LLIETAYVQHPVNPADYSPPDVRPAFRHRFKTILKHPGQKTTKRYGVVECDPLVLEGLDR 431
++++ + ++ D + PAF ++++ K+YGV+ C V +D
Sbjct: 235 SIMDSCMINKYIDGEDID--EKVPAFYYKYR-------YNNNKKYGVISCHDNVYSLMDE 285
Query: 432 SAKHMLIP-----YVPMLVPPKKWKGYNKGGYLFLPSYVMRTHGSRKQQEALKSVTGNCM 486
H L+ +PM+VPP+ W NKG YL P ++MRT+GS+ Q+ +L + +
Sbjct: 286 G--HFLVEAMNARLLPMVVPPQPWTHPNKGCYLQYPCFIMRTNGSKLQKTSLYQ---SDL 340
Query: 487 KKVFEALDTLGSTKWRVNKQVLSVLESIWVSGGNIAGLVDRNDVLIPEKPLSEDMTEVQ- 545
++E L+ LG W+ N++++S+L W GG IA L R D +PE P ED+ + +
Sbjct: 341 TNIYEGLNVLGEVPWKTNEKMMSILLEAWEKGGGIADLPSRYDFELPESPSQEDLQDEKV 400
Query: 546 --KWKWSVRKAKKINQERHSQRCDTELKLSVARRMKDEEGFYYPHNLDFRGRAYPMHPHL 603
+ +RK K N + HS RCDT KL+VA++++ E FY+PHN+DFRGR+YP+ PHL
Sbjct: 401 KRDFNKKLRKVKGANNDLHSLRCDTLYKLNVAKQLQ-EYTFYFPHNVDFRGRSYPIPPHL 459
Query: 604 NHLSSDVCRGVLEFAEGRPLGKSGLRWLKIHLANLFSGGVEKLSHDGRLAFVENHLYEIF 663
NH+ SD CR L+FAE + LG+ G WLK+ +ANLF GV+K+S + R+AF ++ I+
Sbjct: 460 NHMGSDFCRSTLKFAEEKELGERGFEWLKVQVANLF--GVDKVSFEDRVAFTMENIENIY 517
Query: 664 DSAENPINGSRWWLTAEDPFQCLAACINLSEALKSSSPHSVISHLPIHQDGSCNGLQHYA 723
DSA+ P++G RWWL A+ P+Q LAACI L++A++S +P + S LPIHQDG+CNGLQHYA
Sbjct: 518 DSADRPLDGKRWWLKADSPWQTLAACIELTDAIRSGNPTTFKSSLPIHQDGTCNGLQHYA 577
Query: 724 ALGRNTLEAAAVNLVAGEKPADVYSEIAVRVHEIMKRDSNKDPSKHPQALLAKILIDQVD 783
ALG + L A VNL+ KP DVY+ +A V +I+ D+ LAK+L +++
Sbjct: 578 ALGGDELGALKVNLLPSPKPQDVYTGVAQMVAQIVHEDALAGDE------LAKLLDGKIE 631
Query: 784 RKLVKQTVMTSVYGVTFVGAREQIKRRLEEKGHITDDRQLFAAACYAAKVTLTALGEIFE 843
RK++KQTVMTSVYGVTFVGAR QI+ L +K I D+ LF A Y +K T +L ++F
Sbjct: 632 RKIIKQTVMTSVYGVTFVGARMQIENALSDKYQI-DEATLFKATTYLSKTTFASLDKMFI 690
Query: 844 AARSIMGWLGDCAKVIASEN-QPVRWTTPLGLPVVQPYCKNERHLIRTSLQ-VLALQREG 901
ARSIM WL CA +I+ + + V W TPLGLPVVQPY K + ++T + L ++
Sbjct: 691 GARSIMAWLAQCAGLISKQTGECVAWYTPLGLPVVQPYRKGGKVSVKTIMNDYLMVEDND 750
Query: 902 NL-VKIRKQRTAFPPNFVHSLDGSHMMMTAVACRDAGLHFAGL 943
+L V RKQR+AFPPNF+HSLD +HM +TA+ C+ G+ FA +
Sbjct: 751 HLPVDSRKQRSAFPPNFIHSLDSTHMFLTAIQCKKKGITFASV 793
>gi|449016962|dbj|BAM80364.1| single subunit mitochondrial RNA polymerase [Cyanidioschyzon merolae
strain 10D]
Length = 1252
Score = 506 bits (1302), Expect = e-140, Method: Compositional matrix adjust.
Identities = 310/807 (38%), Positives = 451/807 (55%), Gaps = 79/807 (9%)
Query: 173 RKFNLLRRRQVKQETEAWERMVDEYKELEAKMIEKRLAPNLPHIKGLFLGWFGPLSEAIE 232
R+FNL E A E V Y+ +E+ +L + L L WF P++ AI
Sbjct: 420 REFNL--------EERAVEAAVARYRSFTQSALERGDINSLQPSQRLLLSWFFPVTMAIH 471
Query: 233 REQKMQRTKKQKAAY-----APHIELLPADKVAVIVMHKMMGLVMAGHEDRC-VQVVQAA 286
+EQ +R ++ + +Y PH+ L + +AVI +H+ +G V+ +DR V ++ A
Sbjct: 472 QEQ--ERIRRGELSYDGNVCGPHLLRLKPEVLAVIALHETLGRVL---QDRAGVAFIRVA 526
Query: 287 VHIGMAIEQEIRIHSFLEKTKNYKRKKIIADTEEVLSKEKELLRKRVNSLIKSKRVMEAQ 346
+G +++ EI + E + +++ D L + L ++ R + A
Sbjct: 527 SAVGRSVQAEINLQRLRELHSEQRHRQLPQD--RALRRTLAL----ASTGSGGSRAVAAI 580
Query: 347 KLLKNE---ETKPWGRDTQAKLGSRLVELLIETAYVQHPVNPADYSPPDVRPAFRHRFKT 403
L +T W K+GS L+ +++ A + H P AFRH ++
Sbjct: 581 NLAAKRMELDTATWDDSVTIKVGSVLISFVMKHALI-HIDTPTGKQAVQ---AFRHGYR- 635
Query: 404 ILKHPGQKTTKRYGVVECDPLVLEGL---DRSAKHMLIP-YVPMLVPPKKWKGYNKGGYL 459
P Q+ ++ GV+E VL L + + ++P + PMLVPP+ W YN GGYL
Sbjct: 636 ----PLQREPRKVGVIELHKSVLNLLLANESDLRETILPRFQPMLVPPRPWTAYNSGGYL 691
Query: 460 FLPSYVMRTHGSRKQQEALKSVTGNCMKKVFEALDTLGSTKWRVNKQVLSVLESIWVSGG 519
VMR GSR Q EALK + +VF L+ LG+T WR+N+ VL V+E +W +GG
Sbjct: 692 RPRGLVMRVRGSRLQLEALKK---GDLSEVFAGLNALGATPWRINRPVLDVVEKLWRAGG 748
Query: 520 NIAGLVDRNDVLIPEKPLSEDMTE---------------VQKWKWSVRKAKKINQERHSQ 564
+IAGLV R D+ +P L+E + + ++ + ++ + +K N+ERH+
Sbjct: 749 DIAGLVARADLQLPA--LAESVVDPAPDGKESAASTESLSREQRRAIWRIRKTNRERHAL 806
Query: 565 RCDTELKLSVARRMKDEEGFYYPHNLDFRGRAYPMHPHLNHLSSDVCRGVLEFA-EGRPL 623
RC+ +L AR D FY PHNLDFRGRAYPM HL+H+SSDVCRG+L FA G +
Sbjct: 807 RCELHYRLETAREFADVSRFYLPHNLDFRGRAYPMPSHLHHMSSDVCRGLLTFAGPGLRV 866
Query: 624 GKSGLRWLKIHLANLFSGGVEKLSHDGRLAFVENHLYEIFDSAENPINGS--RWWLTAED 681
G+ GL W+K+HLANL G++KL D R+AF E+ + ++ A P S WW ED
Sbjct: 867 GERGLFWMKVHLANLC--GMDKLPFDERVAFAESVMPKVLAVAAAPTADSNLEWWAQQED 924
Query: 682 PFQCLAACINLSEALKSSSPHSVISHLPIHQDGSCNGLQHYAALGRNTLEAAAVNLVAGE 741
PFQ LAAC L+ A P S LPI QDGSCNGLQHYAALGR+ VNL+ E
Sbjct: 925 PFQLLAACFELAAAKGGLDP-DYHSTLPIQQDGSCNGLQHYAALGRDERGGYQVNLLPSE 983
Query: 742 KPADVYSEIAVRVHEIMKRDSNKDPSKHPQALLAKILIDQVDRKLVKQTVMTSVYGVTFV 801
+P DVYS +A V E + D+ + +A++L ++ RK+VKQTVMTSVYGVT +
Sbjct: 984 RPQDVYSGVAELVRERVAHDAREG------VPIAQLLQGRISRKIVKQTVMTSVYGVTLI 1037
Query: 802 GAREQIKRRLEEKGHITDDRQLFAAACYAAKVTLTALGEIFEAARSIMGWLGDCAKVIAS 861
GAREQI+ RL E +++ + A+ Y AK TL +LG+IF A M WL +CA +A+
Sbjct: 1038 GAREQIQNRLRELPDFPEEKT-WEASFYLAKQTLGSLGDIFRGATDTMEWLAECALRVAT 1096
Query: 862 ENQ---PVRWTTPLGLPVVQPYCKNERHLIRTSLQVLALQREGNLVKIR--KQRTAFPPN 916
+ VRW TPLGLPV+QPY + E L+ T +Q + L+ + + + + +QR+AFPPN
Sbjct: 1097 SKERTNAVRWITPLGLPVIQPYRRREARLVNTVVQHVLLEAQNDHLPVSRARQRSAFPPN 1156
Query: 917 FVHSLDGSHMMMTAVACRDAGLHFAGL 943
++HSLD +HM+MTA+ACR AGL FA +
Sbjct: 1157 YIHSLDSTHMLMTALACRRAGLQFAAV 1183
>gi|401883409|gb|EJT47618.1| Rpo41 [Trichosporon asahii var. asahii CBS 2479]
Length = 1321
Score = 501 bits (1289), Expect = e-138, Method: Compositional matrix adjust.
Identities = 300/816 (36%), Positives = 463/816 (56%), Gaps = 91/816 (11%)
Query: 190 WERMVDEYKELEAKMIEKRLAPNLPHIKGLFLGWFGPLSEAIEREQKMQRTKKQKAAYAP 249
W + EY E + + KR+ P +GP S ++ +QK+
Sbjct: 385 WYLALTEYLEQDIDDMRKRIESTKPEQLDSRATRWGPQS-GMKDDQKLL----------- 432
Query: 250 HIELLPADKVAVIVMHKMMGLVMAGHEDRCVQVVQAAVHIGMAIEQEIR---IHSFLEKT 306
++ LP ++A+I + ++M ++ +G + +++++ + +G AIE E R I S +
Sbjct: 433 YLSTLPPKRLALITILELMRMIGSGGVNDGMKLLRGVMGVGRAIEAEYRADMIRSIAGEK 492
Query: 307 KNYKRKKIIADTEE-----VLSKEKELLRKRVNSLIKSKRVMEAQKLLKNEE-------T 354
+K I T++ V S KE+ R+R +S AQ + E T
Sbjct: 493 SRLWQKVIDPKTQKPSRLNVESTWKEIGREREKEAKESSDGAAAQSVKAGPESDLRAVWT 552
Query: 355 KPWGRDTQAKLGSRLVELLIETA-YVQHPVNP-ADYSPPDVRPAFRHRFKTILKHPGQKT 412
PW Q +G+ LVE LI+TA V+H +P + +PAF H F+ +
Sbjct: 553 PPWSGMVQMSIGTHLVEALIKTARVVRHGTDPLTGEQVTEKQPAFAHSFEYV-------R 605
Query: 413 TKRYGVVECDPLVLEGL-DRSAKHMLIP-YVPMLVPPKKWKGYNKGGYLFLPSYVMRTHG 470
++ GV++ +P+V + L + S + ++ P ++PMLVPP WK +N+G YL +P+ +MR
Sbjct: 606 GRKLGVIKANPVVAKRLANDSVRQVISPKHLPMLVPPNSWKAWNQGPYLTIPTTMMRFKD 665
Query: 471 SRKQQEALKSVTGNC-MKKVFEALDTLGSTKWRVNKQVLSVLESIWVSGGNIAGL---VD 526
S +Q+ L++ + + ++ VF LD L ST WR+N+ V V+ W G IA + +
Sbjct: 666 SVEQKNYLEAASKSGHLEPVFHGLDVLSSTPWRINRNVFEVVLKAWNDGDAIADIPATAE 725
Query: 527 RNDVLIPEKPLS-EDMTEVQKWKWSVRKAKKINQERHSQRCDTELKLSVARRMKDEEGFY 585
+ +++IPEKP D T+ ++ ++++ ++ H++RC L +AR ++ FY
Sbjct: 726 KCEIVIPEKPDDPNDPTKRYEYVQAMKQLSLQQRKNHAERCKYNYNLEIARSYINDV-FY 784
Query: 586 YPHNLDFRGRAYPMHPHLNHLSSDVCRGVLEFAEGRPLGKSGLRWLKIHLANLFSGGVEK 645
PHNLDFRGRAYP+ PHL+ + D+CRG+L F +PLG++GLRWL+IHLANL+ G +K
Sbjct: 785 IPHNLDFRGRAYPIPPHLSPVGDDLCRGLLTFGVKKPLGENGLRWLQIHLANLY--GYDK 842
Query: 646 LSHDGRLAFVENHLYEIFDSAENPINGSRWWLTAEDPFQCLAACINLSEALKSSSPHSVI 705
S D R+ F ++H+ +IFDSA++P++G RWWL AEDP+QCLAAC L+ AL+S P
Sbjct: 843 ASFDERVQFSKDHVEDIFDSADHPLDGKRWWLQAEDPWQCLAACFELAGALRSGDPSKFE 902
Query: 706 SHLPIHQDGSCNGLQHYAALGRNTLEAAAVNLVAGEKPADVYSEIAVRVHEIMKRDSNKD 765
S LP+HQDG+CNG+QHYAALG + A AVNL G++PAD+YS + V+E ++ D K
Sbjct: 903 SSLPVHQDGTCNGMQHYAALGGDVRGAKAVNLEQGDRPADIYSTVLALVNESIEADQKKG 962
Query: 766 PSKHPQALLAKILIDQVDRKLVKQTVMTSVYGVTFVGAREQIKRRLEEKGHITDDRQLFA 825
P ALL K + + RK+VKQTVMT+VYGVTFVGAR+QI ++L +G ++ D ++
Sbjct: 963 ---VPTALLIK---NPLGRKVVKQTVMTTVYGVTFVGARDQIAKQLRARGDMSSD-DVWI 1015
Query: 826 AACYAAKVTLTALGEIFEAARSIMGWLGDCAKVI--------------ASENQP------ 865
+ Y AK L ++G +F AR+I WL + A+++ A +P
Sbjct: 1016 TSAYIAKKVLNSIGSLFFGARAIQDWLTNTARLVSRAIPADRLEDATAAETKRPRGPRPG 1075
Query: 866 ----------------VRWTTPLGLPVVQPYCKNERHLIRTSLQVLALQREG--NLVKIR 907
V WT+PLGLPVVQPY K + + TS+Q + + + V +
Sbjct: 1076 PKSQVKSRIAKELMTSVVWTSPLGLPVVQPYRKPIKKQVMTSMQTVFISDPNAPSEVSPQ 1135
Query: 908 KQRTAFPPNFVHSLDGSHMMMTAVACRDAGLHFAGL 943
KQ TAFPPNFVHSLD +HM++TAVAC A + FA +
Sbjct: 1136 KQATAFPPNFVHSLDATHMLLTAVACNQANITFASV 1171
>gi|406698149|gb|EKD01391.1| Rpo41 [Trichosporon asahii var. asahii CBS 8904]
Length = 1321
Score = 501 bits (1289), Expect = e-138, Method: Compositional matrix adjust.
Identities = 300/816 (36%), Positives = 463/816 (56%), Gaps = 91/816 (11%)
Query: 190 WERMVDEYKELEAKMIEKRLAPNLPHIKGLFLGWFGPLSEAIEREQKMQRTKKQKAAYAP 249
W + EY E + + KR+ P +GP S ++ +QK+
Sbjct: 385 WYLALTEYLEQDIDDMRKRIESTKPEQLDSRATRWGPQS-GMKDDQKLL----------- 432
Query: 250 HIELLPADKVAVIVMHKMMGLVMAGHEDRCVQVVQAAVHIGMAIEQEIR---IHSFLEKT 306
++ LP ++A+I + ++M ++ +G + +++++ + +G AIE E R I S +
Sbjct: 433 YLSTLPPKRLALITILELMRMIGSGGVNDGMKLLRGVMGVGRAIEAEYRADMIRSIAGEK 492
Query: 307 KNYKRKKIIADTEE-----VLSKEKELLRKRVNSLIKSKRVMEAQKLLKNEE-------T 354
+K I T++ V S KE+ R+R +S AQ + E T
Sbjct: 493 SRLWQKVIDPKTQKPSRLNVESTWKEIGREREKEAKESSDGAAAQSVKAGPESDLRAVWT 552
Query: 355 KPWGRDTQAKLGSRLVELLIETA-YVQHPVNP-ADYSPPDVRPAFRHRFKTILKHPGQKT 412
PW Q +G+ LVE LI+TA V+H +P + +PAF H F+ +
Sbjct: 553 PPWSGMVQMSIGTHLVEALIKTARVVRHGTDPLTGEQVTEKQPAFAHSFEYV-------R 605
Query: 413 TKRYGVVECDPLVLEGL-DRSAKHMLIP-YVPMLVPPKKWKGYNKGGYLFLPSYVMRTHG 470
++ GV++ +P+V + L + S + ++ P ++PMLVPP WK +N+G YL +P+ +MR
Sbjct: 606 GRKLGVIKANPVVAKRLANDSVRQVISPKHLPMLVPPNPWKAWNQGPYLTIPTTMMRFKD 665
Query: 471 SRKQQEALKSVTGNC-MKKVFEALDTLGSTKWRVNKQVLSVLESIWVSGGNIAGL---VD 526
S +Q+ L++ + + ++ VF LD L ST WR+N+ V V+ W G IA + +
Sbjct: 666 SVEQKNYLEAASKSGHLEPVFHGLDVLSSTPWRINRNVFEVVLKAWNDGDAIADIPATAE 725
Query: 527 RNDVLIPEKPLS-EDMTEVQKWKWSVRKAKKINQERHSQRCDTELKLSVARRMKDEEGFY 585
+ +++IPEKP D T+ ++ ++++ ++ H++RC L +AR ++ FY
Sbjct: 726 KCEIVIPEKPDDPNDPTKRYEYVQAMKQLSLQQRKNHAERCKYNYNLEIARSYINDV-FY 784
Query: 586 YPHNLDFRGRAYPMHPHLNHLSSDVCRGVLEFAEGRPLGKSGLRWLKIHLANLFSGGVEK 645
PHNLDFRGRAYP+ PHL+ + D+CRG+L F +PLG++GLRWL+IHLANL+ G +K
Sbjct: 785 IPHNLDFRGRAYPIPPHLSPVGDDLCRGLLTFGVKKPLGENGLRWLQIHLANLY--GYDK 842
Query: 646 LSHDGRLAFVENHLYEIFDSAENPINGSRWWLTAEDPFQCLAACINLSEALKSSSPHSVI 705
S D R+ F ++H+ +IFDSA++P++G RWWL AEDP+QCLAAC L+ AL+S P
Sbjct: 843 ASFDERVQFSKDHVEDIFDSADHPLDGKRWWLQAEDPWQCLAACFELAGALRSGDPSKFE 902
Query: 706 SHLPIHQDGSCNGLQHYAALGRNTLEAAAVNLVAGEKPADVYSEIAVRVHEIMKRDSNKD 765
S LP+HQDG+CNG+QHYAALG + A AVNL G++PAD+YS + V+E ++ D K
Sbjct: 903 SSLPVHQDGTCNGMQHYAALGGDVRGAKAVNLEQGDRPADIYSTVLALVNESIEADQKKG 962
Query: 766 PSKHPQALLAKILIDQVDRKLVKQTVMTSVYGVTFVGAREQIKRRLEEKGHITDDRQLFA 825
P ALL K + + RK+VKQTVMT+VYGVTFVGAR+QI ++L +G ++ D ++
Sbjct: 963 ---VPTALLIK---NPLGRKVVKQTVMTTVYGVTFVGARDQIAKQLRARGDMSSD-DVWI 1015
Query: 826 AACYAAKVTLTALGEIFEAARSIMGWLGDCAKVI--------------ASENQP------ 865
+ Y AK L ++G +F AR+I WL + A+++ A +P
Sbjct: 1016 TSAYIAKKVLNSIGSLFFGARAIQDWLTNTARLVSRAIPADRLEDATAAETKRPRGPRPG 1075
Query: 866 ----------------VRWTTPLGLPVVQPYCKNERHLIRTSLQVLALQREG--NLVKIR 907
V WT+PLGLPVVQPY K + + TS+Q + + + V +
Sbjct: 1076 PKSQVKSRIAKELMTSVVWTSPLGLPVVQPYRKPIKKQVMTSMQTVFISDPNAPSEVSPQ 1135
Query: 908 KQRTAFPPNFVHSLDGSHMMMTAVACRDAGLHFAGL 943
KQ TAFPPNFVHSLD +HM++TAVAC A + FA +
Sbjct: 1136 KQATAFPPNFVHSLDATHMLLTAVACNQANITFASV 1171
>gi|302676686|ref|XP_003028026.1| hypothetical protein SCHCODRAFT_60184 [Schizophyllum commune H4-8]
gi|300101714|gb|EFI93123.1| hypothetical protein SCHCODRAFT_60184 [Schizophyllum commune H4-8]
Length = 1086
Score = 496 bits (1278), Expect = e-137, Method: Compositional matrix adjust.
Identities = 297/764 (38%), Positives = 433/764 (56%), Gaps = 97/764 (12%)
Query: 241 KKQKAAYAPHIELLPADKVAVIVMHKMMGLVMAGHEDRCVQVVQAAVHIGMAIEQEIRIH 300
K Q +P++ L+ A++++++ + ++M L G ++ +A + +G A+E E
Sbjct: 160 KYQAEMISPYLALVNAERLSLLTIMELMTLHDTGGVTDGMKTARAVIAVGKAVEAEY--- 216
Query: 301 SFLEKTKNYKRKKIIADTEEVLSKEKELLRKRVNSLIKSKRVMEAQKLLKNEE--TKPWG 358
K + KR I A S + + S ++ +RV A +L+++ E T PW
Sbjct: 217 ----KAQMCKRNHI-AVPSSTRSSDVSVFSNLGYSNLQERRVA-AARLMEDGEAWTAPWS 270
Query: 359 RDTQAKLGSRLVELLIETAYVQH-PVNPADYSP-PDVRPAFRHRFKTILKHPGQKTTKRY 416
T+A++G L++ L++TA VQ V+ D + +PAF H ++ + GQ R
Sbjct: 271 VHTRARVGGVLIDCLMDTAKVQRTAVDKNDGKILTEEQPAFYHSYEYV---QGQ----RL 323
Query: 417 GVVECDPLVLEGLDRSAKHMLIPY---------VPMLVPPKKWKGYNKGGYLFLPSYVMR 467
GV++ + V A HM + +PMLV PK W YN GGYL+ +Y MR
Sbjct: 324 GVIKLNQEV-------AAHMANEWTIDTVHPRHLPMLVKPKPWLNYNDGGYLYHKTYAMR 376
Query: 468 THGSRKQQEALK--SVTGNCMKKVFEALDTLGSTKWRVNKQVLSVLESIWVSGGNIAGLV 525
GSR+QQ LK S G C + V+ LD LGST W++N+++ V+ +W G L
Sbjct: 377 FKGSREQQAYLKHASDAGQC-ELVYAGLDVLGSTPWKINRKIFDVVLEVWNRGDRWGKLP 435
Query: 526 DRN-DVLIPEKPLSEDMTEVQKWKWS--VRKAKKINQERHSQRCDTELKLSVARRMKDEE 582
D PE LS D ++ WS ++ + Q HS RC K+ +AR E
Sbjct: 436 PATFDEPEPEA-LSPDADSRKRADWSHAMKLYNQAKQSNHSHRCSVNYKIEIARTFLGET 494
Query: 583 GFYYPHNLDFRGRAYPMHPHLNHLSSDVCRGVLEFAEGRPLGKSGLRWLKIHLANLFSGG 642
FY PHNLDFRGRAYP+ PHLNH+ D+ RG+L FAE +PLG+ G RWLKIH+ANL+ G
Sbjct: 495 -FYQPHNLDFRGRAYPVPPHLNHIGDDLSRGLLMFAEKKPLGERGFRWLKIHIANLY--G 551
Query: 643 VEKLSHDGRLAFVENHLYEIFDSAENPINGSRWWLTAEDPFQCLAACINLSEALKSSSPH 702
+K S D R+ +VE+ L +++DSA NPING RWWL A+DP+QCLAA + L +A++S +P
Sbjct: 552 FDKASFDERVQWVEDRLADVYDSANNPINGKRWWLEADDPWQCLAASMELRDAIESGNPL 611
Query: 703 SVISHLPIHQDGSCNGLQHYAALGRNTLEAAAVNLVAGEKPADVYSEIAVRVHEIMKRDS 762
+ S LP+HQDG+CNGLQHYAALG + AA VNL ++P+DVY+ + V IM+ D
Sbjct: 612 AFESSLPVHQDGTCNGLQHYAALGGDPEGAAQVNLQKADRPSDVYTYVGRMVERIMEEDE 671
Query: 763 NK-DPSKHPQALLAKILIDQVDRKLVKQTVMTSVYGVTFVGAREQIKRRLEEKGHITDDR 821
K DP +A +L ++ RK+VKQTVMT+VYGVTF+GAR+QI+R+L ++ I +
Sbjct: 672 KKGDP-------MAILLKGKISRKVVKQTVMTTVYGVTFIGARDQIERQLRDRKDIPPE- 723
Query: 822 QLFAAACYAAKVTLTALGEIFEAARSIMGWLGDCAKVIA-------------SENQ---- 864
+ AA Y A+ L +G++F A+ IM WL CA++IA +EN+
Sbjct: 724 HCWGAATYLARKVLACIGDLFYGAKHIMTWLNLCARLIAKSIPMDRLQEMIVAENEQAKA 783
Query: 865 -----------------------PVRWTTPLGLPVVQPYCKNERHLIRTSLQVLALQREG 901
V WTTP+GLP+ QPY K R ++T+LQ + +
Sbjct: 784 KQDKRKRKDLGSKHKVLKREQMTSVVWTTPMGLPIAQPYRKATRKQVKTALQTVLITDPN 843
Query: 902 NLVKIR--KQRTAFPPNFVHSLDGSHMMMTAVACRDAGLHFAGL 943
+L ++ KQ TAFPPNF+HSLD +HMM+TA+ CR GL FA +
Sbjct: 844 SLAEVNSSKQATAFPPNFIHSLDATHMMLTALECRQQGLTFASV 887
>gi|281210629|gb|EFA84795.1| DNA-dependent RNA polymerase [Polysphondylium pallidum PN500]
Length = 1010
Score = 496 bits (1276), Expect = e-137, Method: Compositional matrix adjust.
Identities = 251/560 (44%), Positives = 359/560 (64%), Gaps = 33/560 (5%)
Query: 395 PAFRHRFKTILKHPGQKTTKRYGVVECDPLVLEGLDRSAKHMLIP-----YVPMLVPPKK 449
PAF ++++ K+YGV+ C V +D H L+ +PM+VPP+
Sbjct: 270 PAFYYKYR-------YNNNKKYGVISCHDNVYSLMDEG--HFLVEAMNARLLPMVVPPQP 320
Query: 450 WKGYNKGGYLFLPSYVMRTHGSRKQQEALKSVTGNCMKKVFEALDTLGSTKWRVNKQVLS 509
W NKG YL P ++MRT+GS+ Q+ +L + ++E L+ LG W+ N++++S
Sbjct: 321 WTHPNKGCYLQYPCFIMRTNGSKLQKTSLYQSD---LTNIYEGLNVLGEVPWKTNEKMMS 377
Query: 510 VLESIWVSGGNIAGLVDRNDVLIPEKPLSEDMTEVQ---KWKWSVRKAKKINQERHSQRC 566
+L W GG IA L R D +PE P ED+ + + + +RK K N + HS RC
Sbjct: 378 ILLEAWEKGGGIADLPSRYDFELPESPSQEDLQDEKVKRDFNKKLRKVKGANNDLHSLRC 437
Query: 567 DTELKLSVARRMKDEEGFYYPHNLDFRGRAYPMHPHLNHLSSDVCRGVLEFAEGRPLGKS 626
DT KL+VA++++ E FY+PHN+DFRGR+YP+ PHLNH+ SD CR +L+FAE + LG+
Sbjct: 438 DTLYKLNVAKQLQ-EYTFYFPHNVDFRGRSYPIPPHLNHMGSDFCRSMLKFAEEKELGER 496
Query: 627 GLRWLKIHLANLFSGGVEKLSHDGRLAFVENHLYEIFDSAENPINGSRWWLTAEDPFQCL 686
G WLK+ +ANLF GV+K+S + R+AF ++ I+DSA+ P++G RWWL A+ P+Q L
Sbjct: 497 GFEWLKVQVANLF--GVDKVSFEDRVAFTMENIENIYDSADRPLDGKRWWLKADSPWQTL 554
Query: 687 AACINLSEALKSSSPHSVISHLPIHQDGSCNGLQHYAALGRNTLEAAAVNLVAGEKPADV 746
AACI L++A++S +P + S LPIHQDG+CNGLQHYAALG + L A VNL+ KP DV
Sbjct: 555 AACIELTDAIRSGNPTTFKSSLPIHQDGTCNGLQHYAALGGDELGALKVNLLPSPKPQDV 614
Query: 747 YSEIAVRVHEIMKRDSNKDPSKHPQALLAKILIDQVDRKLVKQTVMTSVYGVTFVGAREQ 806
Y+ +A V +I+ D+ LAK+L +++RK++KQTVMTSVYGVTFVGAR Q
Sbjct: 615 YTGVAQMVAQIVHEDALAGDE------LAKLLDGKIERKIIKQTVMTSVYGVTFVGARMQ 668
Query: 807 IKRRLEEKGHITDDRQLFAAACYAAKVTLTALGEIFEAARSIMGWLGDCAKVIASEN-QP 865
I+ L +K I D+ LF A Y +K T +L ++F ARSIM WL CA +I+ + +
Sbjct: 669 IENALSDKYQI-DEATLFKATTYLSKTTFASLDKMFIGARSIMAWLAQCAGLISKQTGEC 727
Query: 866 VRWTTPLGLPVVQPYCKNERHLIRTSLQ-VLALQREGNL-VKIRKQRTAFPPNFVHSLDG 923
V W TPLGLPVVQPY K + ++T + L ++ +L V RKQR+AFPPNF+HSLD
Sbjct: 728 VAWYTPLGLPVVQPYRKGGKVSVKTIMNDYLMVEDNDHLPVDSRKQRSAFPPNFIHSLDS 787
Query: 924 SHMMMTAVACRDAGLHFAGL 943
+HM +TA+ C+ G+ FA +
Sbjct: 788 THMFLTAIQCKKKGITFASV 807
>gi|323456523|gb|EGB12390.1| hypothetical protein AURANDRAFT_20280 [Aureococcus anophagefferens]
Length = 902
Score = 493 bits (1269), Expect = e-136, Method: Compositional matrix adjust.
Identities = 302/771 (39%), Positives = 431/771 (55%), Gaps = 63/771 (8%)
Query: 204 MIEKRLA----PNLPHIKGLFLGWFGPLSEAIEREQKMQRTKKQKA---AYAPHIELLPA 256
MIE L+ L ++ L W+ PL I E+K + Y P + LLP
Sbjct: 95 MIEDLLSLGKGAELKPVQRLMAQWYEPLVTRITAERKATLDGDKGGDLRIYGPLLLLLPP 154
Query: 257 DKVAVIVMHKMMGLVMAGHEDRCVQVVQAAVHIGMAIEQEIRIHSFLEKTKNYKRKKIIA 316
+++AV+ MH +GL + H + +G ++ E R+ K +N +R+++ A
Sbjct: 155 EQLAVLTMHTTIGLCLK-HGPLGAKYSNLVTTLGETVQAEARVL----KLRNLRRERLKA 209
Query: 317 --DTEEVLSKEKELLRKRVNSLIKSKRV-MEAQKLLKNEETKPWGRDTQAKLGSRLVELL 373
D E + K L R + + + V A++ L+ + W T+AKLGS LV L
Sbjct: 210 AEDAEGKRAVPKTFLDARALARLPTHVVNSRAKRALEEGDDTDWPTITRAKLGSALVMAL 269
Query: 374 IETAYVQHPVNPADYSPPDVRPAFRHRFKTILKHP-GQKTTKRYGVVECDPLVL------ 426
++ A D P +L+H ++ G++ +L
Sbjct: 270 LDVA-------KDDAGSP------------LLEHTIVYSNARKIGIIRAKDELLSHARCP 310
Query: 427 EGLDRSAKHMLIPYVPMLVPPKKWKGYNKGGYLFLPSYVMRTHGSRKQQEALKSVTGNCM 486
E + R+A + ++PMLV P++W+ Y++GG+L L + MRTHG Q EA ++ G
Sbjct: 311 ETIRRAA---MPRFLPMLVEPRRWRAYDEGGFLRLRAVAMRTHGCALQMEAFRNARG-IE 366
Query: 487 KKVFEALDTLGSTKWRVNKQVLSVLESIWVSGGNIAGLVDRNDVLIPEK-PLSEDMTEVQ 545
V LD +G W VN V ++++ W SGG L + D+ +PE L+E +
Sbjct: 367 GGVLAGLDAMGKVPWAVNGPVFDLVKAAWASGGKWPDLPSQEDLALPEPMDLAEALARAD 426
Query: 546 K--------WKWSVRKAKKI---NQERHSQRCDTELKLSVARRMKDEEGFYYPHNLDFRG 594
+ +R++ ++ N E HS RCDT LKLS+A + KDE FY+P+N+DFRG
Sbjct: 427 GDEDGGKKLYDAHLRRSARLKRRNAELHSLRCDTLLKLSIAEQFKDEAAFYFPYNVDFRG 486
Query: 595 RAYPMHPHLNHLSSDVCRGVLEFAEGRPLGKSGLRWLKIHLANLFSGGVEKLSHDGRLAF 654
RAYP+ P+LNHL SDVCR +L FAE + LG GL WL+IHLANLF G+ K S D R AF
Sbjct: 487 RAYPVPPNLNHLGSDVCRAMLTFAEAKRLGDDGLFWLRIHLANLF--GLSKKSLDDRAAF 544
Query: 655 VENHLYEIFDSAENPINGSRWWLTAEDPFQCLAACINLSEALKSSSPHSVISHLPIHQDG 714
H +I D+ E P++G+ WWL A++P+Q LAAC L+ A + P LP+H DG
Sbjct: 545 AVAHEADIRDAYERPMDGNMWWLEADEPWQALAACRELARAAELDDPRDYECALPVHADG 604
Query: 715 SCNGLQHYAALGRNTLEAAAVNLVAGEKPADVYSEIAVRVHEIMKRDSNKDPSKHPQALL 774
SCNGLQHYAALGR+ VNL+ GE P DVY + V E + R + D + L
Sbjct: 605 SCNGLQHYAALGRDHEGGRQVNLLPGEAPRDVYEGVRALVAEKVARAATGDEALE-TVRL 663
Query: 775 AKILIDQVDRKLVKQTVMTSVYGVTFVGAREQIKRRLEEKGHITDDRQLFAAACYAAKVT 834
A+I+ + RK+VKQTVMTSVYGVTFVGAR+QI RL + G + D+ +L+ ACY A++T
Sbjct: 664 AQIVDGLITRKVVKQTVMTSVYGVTFVGARQQILGRLTDAGDV-DEAELYLCACYVARLT 722
Query: 835 LTALGEIFEAARSIMGWLGDCAKVIASENQPVRWTTPLGLPVVQPYCKNERHLIRTSLQ- 893
L L E+F +AR IMGWL CA++++ QPV W TPLGLPVVQPY ++ +H ++T Q
Sbjct: 723 LEVLEELFTSARHIMGWLAQCARLVSLHGQPVSWITPLGLPVVQPYRRDGQHAVKTLAQT 782
Query: 894 VLALQREGNL-VKIRKQRTAFPPNFVHSLDGSHMMMTAVACRDAGLHFAGL 943
VL + L V + +Q++AFPPNFVHSLD SHM+MTAV GL F +
Sbjct: 783 VLLVDNSDKLPVSVTRQKSAFPPNFVHSLDSSHMLMTAVEMDHRGLAFTAV 833
>gi|156049831|ref|XP_001590882.1| hypothetical protein SS1G_08623 [Sclerotinia sclerotiorum 1980]
gi|154693021|gb|EDN92759.1| hypothetical protein SS1G_08623 [Sclerotinia sclerotiorum 1980 UF-70]
Length = 1392
Score = 489 bits (1260), Expect = e-135, Method: Compositional matrix adjust.
Identities = 299/834 (35%), Positives = 449/834 (53%), Gaps = 93/834 (11%)
Query: 179 RRRQVKQETEAWERMVDEYKELEAKMIEKRLAPNL--PHIKGLFLGWFGPLSEAIEREQK 236
R Q + E +A + +D +++ + + + L L + W L+ A+E E K
Sbjct: 358 RDIQSQLEEDAVQAAIDRWRDESSNLAKLGLNTTLQSKSLGARMWKWQLALTAALEEELK 417
Query: 237 M---QRTKKQKAA-------YAPHIELLPADKVAVIVMHKMMGLVMAGHEDRCVQVVQAA 286
K+ ++A Y P + LPA+K++ + + M + + D+ + + A
Sbjct: 418 AIDEAEAKQHRSAADISRCEYGPFLRYLPAEKLSALTIISHMHALSSSGIDKGLTLSFAI 477
Query: 287 VHIGMAIEQEIRIHSFLEKTKNYKRKKIIADTEEVLSKEKELLRKRV-----NSLIKSKR 341
+ I ++E E S E + K K + D+ ++ +L+ R S+ ++
Sbjct: 478 LQIAKSVEDE----SIFESIQQNKAKPLFRDSPADRARMLRILKSRARGASGESIDENHS 533
Query: 342 VMEAQK--LLKNEETKPWGRDTQAKLGSRLVELLIETAYV----QHPVNPADYSPPDVRP 395
+ + +L ++ W +AK+GS L+E L++ A V +HP + + ++P
Sbjct: 534 TNHSSEEFVLSQIRSREWSIGIRAKVGSFLLESLLKVAKVPVTLKHP--ETNETVTQMQP 591
Query: 396 AFRHRFKTILKHPGQ--KTTKRYGVVECDPLVLEGLDRSAKH-MLIPYVPMLVPPKKWKG 452
AF H GQ + K+ GV+ + +++E L R H +L ++PMLV P+ W G
Sbjct: 592 AFSH---------GQQYRLGKKLGVINANKVIVELLKREPVHSLLAKHLPMLVKPEPWTG 642
Query: 453 YNKGGYLFLPSYVMRTHGSRKQQE--ALKSVTGNCMKKVFEALDTLGSTKWRVNKQVLSV 510
++ GG+L P VMR + Q A ++ + VF L+ LG W++N+ V V
Sbjct: 643 FSSGGFLRHPGKVMRVKNGDQDQRNYADAAIDQGNLTTVFRGLNILGEQSWKINQPVFDV 702
Query: 511 LESIWVSGGNIAGLV-DRNDVLIPEKP-LSEDMTEVQKWKWSVRKAKKINQERHSQRCDT 568
+ W SG IA L D+ + P +P S D E ++W +V+K + HSQRC
Sbjct: 703 MLDAWNSGDAIANLAPDKPRLEYPPEPETSSDPLERRRWVTAVKKVENAKAGFHSQRCFQ 762
Query: 569 ELKLSVARRMKDEEGFYYPHNLDFRGRAYPMHPHLNHLSSDVCRGVLEFAEGRPLGKSGL 628
+L +AR ++D+ FY+PHN+DFRGRAYP+ P+LNH+ +D CRG++ F G+ LG SGL
Sbjct: 763 NFQLEIARALRDKT-FYFPHNVDFRGRAYPIPPYLNHMGADHCRGLMIFGVGKKLGTSGL 821
Query: 629 RWLKIHLANLFSGGVEKLSHDGRLAFVENHLYEIFDSAENPINGSRWWLTAEDPFQCLAA 688
+WLK+HLAN++ G +K S R F H+ EI+DSA NP+ G RWWL AEDP+QCLAA
Sbjct: 822 KWLKVHLANVY--GFDKASLSEREEFASKHIDEIYDSATNPLGGDRWWLQAEDPWQCLAA 879
Query: 689 CINLSEALKSSSPHSVISHLPIHQDGSCNGLQHYAALGRNTLEAAAVNLVAGEKPADVYS 748
C+ L AL+S P S +S+LP+HQDG+CNGLQHYAALG + A VNL G++PADVY+
Sbjct: 880 CMELKNALESGDPASFVSYLPVHQDGTCNGLQHYAALGGDVWGAQQVNLEPGDRPADVYT 939
Query: 749 EIAVRVHEIMKRDSNKDPSKHPQALLAKILIDQVDRKLVKQTVMTSVYGVTFVGAREQIK 808
+A V E +K+D + SK AKIL ++ RK+VKQTVMT+VYGVTF+GA+ Q++
Sbjct: 940 AVADLVKESIKKDLLEGHSK------AKILDGKITRKVVKQTVMTNVYGVTFIGAKAQVR 993
Query: 809 RRL-EEKGHITDDRQLFAA--ACYAAKVTLTALGEIFEAARSIMGWLGDCAKVIASENQP 865
++L + DD + A Y TAL +F A I WLGDCA ++S P
Sbjct: 994 KQLVAAHRDLPDDTEDNPGTLASYVVTKIFTALSTMFRGAHDIQYWLGDCASRVSSSLTP 1053
Query: 866 ----------------------------------VRWTTPLGLPVVQPYCKNERHLIRTS 891
V WTTPL LPVVQPY N+ L+RTS
Sbjct: 1054 EQVNRIVEHASKQSARPSKGDASKLEEMSQFKSSVIWTTPLNLPVVQPYRTNKSRLVRTS 1113
Query: 892 LQVLALQR--EGNLVKIRKQRTAFPPNFVHSLDGSHMMMTAVACRDAGLHFAGL 943
LQ+L+L + V RKQ FPPNF+HSLD +HM+++AV +A L FA +
Sbjct: 1114 LQLLSLAEPHRSDPVSSRKQLQGFPPNFIHSLDATHMLLSAVKSNEAKLSFAAV 1167
>gi|328869087|gb|EGG17465.1| DNA-dependent RNA polymerase [Dictyostelium fasciculatum]
Length = 1078
Score = 488 bits (1255), Expect = e-135, Method: Compositional matrix adjust.
Identities = 242/506 (47%), Positives = 332/506 (65%), Gaps = 16/506 (3%)
Query: 441 VPMLVPPKKWKGYNKGGYLFLPSYVMRTHGSRKQQEALKSVTGNCMKKVFEALDTLGSTK 500
+PM+V P+ W N G YL P+++MRT+GS+ Q ++ S + K++E L+ LG
Sbjct: 517 LPMVVTPEPWDSPNNGCYLHYPTFIMRTNGSKLQTSSIISAD---LSKIYEGLNILGEVP 573
Query: 501 WRVNKQVLSVLESIWVSGGNIAGLVDRNDVLIP-EKPLSEDMTEVQKWKWSVRKAKKINQ 559
W +N+ VL ++ + W SGG I L R D +P SE + +K V+K K++N
Sbjct: 574 WNINRPVLDIILAAWESGGGIGDLPSRFDYELPLAAEYSESAEQRKKHAKLVKKVKQLNH 633
Query: 560 ERHSQRCDTELKLSVARRMKDEEGFYYPHNLDFRGRAYPMHPHLNHLSSDVCRGVLEFAE 619
+ HS RCD KL V ++++ E FY+PHN+DFRGR+YP+ PHLNHL SD CR +L FAE
Sbjct: 634 DLHSLRCDLSYKLDVGKQLR-EHDFYFPHNVDFRGRSYPIPPHLNHLGSDFCRAMLTFAE 692
Query: 620 GRPLGKSGLRWLKIHLANLFSGGVEKLSHDGRLAFVENHLYEIFDSAENPINGSRWWLTA 679
+PLG GL WLK+HLANL GV+K+S D R+AFV++H+ +++DSA+NP+NG+RWWL A
Sbjct: 693 KKPLGARGLMWLKVHLANL--SGVDKVSFDDRIAFVDSHMADVYDSADNPLNGARWWLAA 750
Query: 680 EDPFQCLAACINLSEALKSSSPHSVISHLPIHQDGSCNGLQHYAALGRNTLEAAAVNLVA 739
+ P+Q LA CI L+ A++S P + +S LP+HQDGSCNGLQHYAALG + A VNL+
Sbjct: 751 DKPWQALATCIELANAVRSGDPANFMSSLPLHQDGSCNGLQHYAALGGDEFGAFKVNLLP 810
Query: 740 GEKPADVYSEIAVRVHEIMKRDSNKDPSKHPQALLAKILIDQVDRKLVKQTVMTSVYGVT 799
KP DVYS +A V ++ D+ + H +AK L+ +V RK++KQTVMTSVYGVT
Sbjct: 811 SPKPQDVYSGVAQLVSATVEHDA---ANGHE---VAKALLGKVQRKIIKQTVMTSVYGVT 864
Query: 800 FVGAREQIKRRLEEKGHITDDRQLFAAACYAAKVTLTALGEIFEAARSIMGWLGDCAKVI 859
++GAR QI+ LEEK + DD +F A+ Y AK T +L ++F ARSIM WL CA I
Sbjct: 865 YIGARAQIQNALEEKYQMDDDF-VFQASSYLAKETFKSLDKMFLGARSIMAWLSQCASAI 923
Query: 860 ASENQPVRWTTPLGLPVVQPYCKNERHLIRTSLQ--VLALQREGNLVKIRKQRTAFPPNF 917
A + V W TPLGLPVVQPY K + I+T VL E V R+QR+AFPPN+
Sbjct: 924 AKSGECVAWYTPLGLPVVQPYRKGGKFSIKTIANEFVLVDDEEHLPVCSRQQRSAFPPNY 983
Query: 918 VHSLDGSHMMMTAVACRDAGLHFAGL 943
+HSLD +HM +TA+ A + FA +
Sbjct: 984 IHSLDSTHMFLTAIEASRANITFASV 1009
>gi|46403038|gb|AAS92533.1| RPO41 [Cryptococcus gattii]
Length = 1180
Score = 486 bits (1252), Expect = e-134, Method: Compositional matrix adjust.
Identities = 291/798 (36%), Positives = 448/798 (56%), Gaps = 95/798 (11%)
Query: 223 WFGPLSEAIER-----EQKMQRTKKQKAAYAP----------------HIELLPADKVAV 261
W G L+ +E+ + +++ + KAA AP ++ LLP DK+A+
Sbjct: 240 WLGELTVELEKRIASMQAEIEALPESKAAVAPPKYSATARMKPQVLLMYLSLLPVDKLAL 299
Query: 262 IVMHKMMGLVMAGHEDRCVQVVQAAVHIGMAIEQEIRIHSF--LEKTKNYKRKKIIADTE 319
I + ++M + +G ++V++ V +G A+E E R + + +Y K I
Sbjct: 300 ITILEIMRMSGSGGIADGMKVLRGMVAVGKAVETEFRAETIKNVAGVDSYHWLKTIDPQT 359
Query: 320 EVLSKE--KELLRKRVNSLIKSKRVM--EAQKLL-------KNEETKPWGRDTQAKLGSR 368
+ S++ + +K ++KR+ EA+++L ++ T W R Q +GS
Sbjct: 360 QKPSRQLIGSVWKKIGEQANQAKRLGKGEAERILPPNHDDMQDIWTPAWSRMIQLGVGSE 419
Query: 369 LVELLIETAYVQHPVNPADYSP--PDVRPAFRHRFKTILKHPGQKTTKRYGVVECDPLVL 426
LV+ L++ A V+ + +++PAF H ++ + K+ GV++ +P+V
Sbjct: 420 LVDALLKVAKVERTARDRNTGEIVMELQPAFTHAYEYV-------RGKKLGVIKLNPVVA 472
Query: 427 EGLDRSAKHMLI--PYVPMLVPPKKWKGYNKGGYLFLPSYVMRTHGSRKQQEALKSVTGN 484
L + ++I ++PMLV P+ W +NKGGYL VMR S +QQ+ LK+ +
Sbjct: 473 ARLAKDDIGVVIHPKHLPMLVEPRPWTAHNKGGYLLHSVPVMRYKESLEQQKWLKAASEE 532
Query: 485 C-MKKVFEALDTLGSTKWRVNKQVLSVLESIWVSGGNIAGLV---DRNDVLIPEKPLSED 540
++ VF LD L ST WR+N++V V+ W G IA + D+ PEKP S D
Sbjct: 533 GHLEPVFHGLDVLSSTPWRINRRVFDVVLESWNKGEPIADIPPSEDKAHYEFPEKPDSSD 592
Query: 541 MTEVQKWKWSVRKAKKINQER--HSQRCDTELKLSVARR-MKDEEGFYYPHNLDFRGRAY 597
+ ++ + + Q+R H++RC + +AR +KD FY PHN+DFRGRAY
Sbjct: 593 QDPQVRVQYVEKTKAVLAQQRKDHAERCKFNYNIEIARSYLKDT--FYLPHNMDFRGRAY 650
Query: 598 PMHPHLNHLSSDVCRGVLEFAEGRPLGKSGLRWLKIHLANLFSGGVEKLSHDGRLAFVEN 657
P+ PHL+ + D+CRG+L F +PLG++GL+WL+IHLAN++ G +K S R F +
Sbjct: 651 PIPPHLSPVGDDLCRGLLTFGTKKPLGETGLKWLQIHLANVY--GYDKASFAERARFAQE 708
Query: 658 HLYEIFDSAENPINGSRWWLTAEDPFQCLAACINLSEALKSSSPHSVISHLPIHQDGSCN 717
H +IFDSA++P++G RWWL AEDP+QCLA C L+ AL+S SP + S LP+HQDG+CN
Sbjct: 709 HEADIFDSADHPLDGKRWWLKAEDPWQCLATCFELAAALRSPSPSAYESSLPVHQDGTCN 768
Query: 718 GLQHYAALGRNTLEAAAVNLVAGEKPADVYSEIAVRVHEIMKRDSNKDPSKHPQALLAKI 777
G+QHYAALG + A AVNL AG++PAD+Y+ + V+++++ D + H ALL K
Sbjct: 769 GMQHYAALGGDVRGAKAVNLEAGDRPADIYTGVVDIVNKVVEEDKK---AGHDIALLIK- 824
Query: 778 LIDQVDRKLVKQTVMTSVYGVTFVGAREQIKRRLEEKGHITDDRQLFAAACYAAKVTLTA 837
+ + RK+VKQTVMT+VYGVTFVGAR+QI ++L +G I + +FA + Y AK L
Sbjct: 825 --EPLGRKVVKQTVMTTVYGVTFVGARDQIAKQLHARGDIAQE-HIFAVSSYIAKTVLNC 881
Query: 838 LGEIFEAARSIMGWLGDCAKVIASENQPVR------------------------------ 867
+G++F A++IM WL A++I+ P R
Sbjct: 882 IGDLFSGAKAIMDWLTTSARLISRSIPPTRIQEAATNLTSTSRTGKVTSRAAKEFMSAVI 941
Query: 868 WTTPLGLPVVQPYCKNERHLIRTSLQVLALQREG--NLVKIRKQRTAFPPNFVHSLDGSH 925
WTTPLGLPVVQPY K + I T+LQ + + + V +KQ TAFPPNF+HSLD +H
Sbjct: 942 WTTPLGLPVVQPYRKAHKKQIMTALQSVYISDPNAPSEVSPQKQATAFPPNFIHSLDATH 1001
Query: 926 MMMTAVACRDAGLHFAGL 943
M++TA+ C+ L FA +
Sbjct: 1002 MLLTALKCKQNNLAFASV 1019
>gi|392563654|gb|EIW56833.1| DNA/RNA polymerase [Trametes versicolor FP-101664 SS1]
Length = 1130
Score = 486 bits (1251), Expect = e-134, Method: Compositional matrix adjust.
Identities = 285/752 (37%), Positives = 424/752 (56%), Gaps = 75/752 (9%)
Query: 238 QRTKKQKAAYAPHIELLPADKVAVIVMHKMMGLVMAGHEDRCVQVVQAAVHIGMAIEQEI 297
++ K+ +P ++LL +K+++I + ++M L +G ++ +A + +G A+E E
Sbjct: 245 RKGSKEDPQLSPFLKLLKPEKLSLITVLELMHLHGSGGVQDGMKTARALLAVGRAVEGE- 303
Query: 298 RIHSFLEKTKNYKRKKI-IADTEEVLSKEKELLRKRVNSLIKSKRVMEAQKLLKNEE-TK 355
K + K+ I + + S ++ + + ++RV + + +EE T
Sbjct: 304 ------HKAEMCKKNNISVPNANPARSGDQNVFTNLGYRDLHARRVTARKYMEDSEEWTS 357
Query: 356 PWGRDTQAKLGSRLVELLIETAYVQHPVNPADYSP--PDVRPAFRHRFKTILKHPGQKTT 413
W + + K+GS LV+ L++ A VQ + + +PAF H ++ H
Sbjct: 358 DWSQLVRVKIGSFLVDCLMDVATVQRSIKDPRTGEKLTEEQPAFFHSYEYQRGH------ 411
Query: 414 KRYGVVECDPLVLEGL--DRSAKHMLIPYVPMLVPPKKWKGYNKGGYLFLPSYVMRTHGS 471
+ GV++ +P V E + D A+ + ++PMLV PK W YN GGYL+ ++ MR S
Sbjct: 412 -KLGVIKFNPAVAERMSKDPIAETLHPRHLPMLVKPKPWLSYNNGGYLYSRTWAMRFKES 470
Query: 472 RKQQEALKSVT-GNCMKKVFEALDTLGSTKWRVNKQVLSVLESIWVSGGNIAGL---VDR 527
R+Q+ L+ + ++ VF LD L ST WR+N+ V V+ +W SG A + V
Sbjct: 471 REQELYLRHASDAGRLELVFAGLDVLSSTPWRINRTVFDVVLKVWNSGERFAKIPPAVPD 530
Query: 528 NDVLIPEKPLSED----MTEVQKWK-WSVRKAKKINQERHSQRCDTELKLSVARRMKDEE 582
+ D M +++ K W KA HS RC K+ +AR +
Sbjct: 531 EPEPERPPNMDFDNKAKMVYLERQKSWMQTKASN-----HSDRCSINYKVEIARAFLGDT 585
Query: 583 GFYYPHNLDFRGRAYPMHPHLNHLSSDVCRGVLEFAEGRPLGKSGLRWLKIHLANLFSGG 642
Y PHN+DFRGRAYP+ PHL+H+ D+ RG+L F E +PLG GLRWLKIHLANL G
Sbjct: 586 -IYLPHNVDFRGRAYPIPPHLSHIGDDLSRGLLLFGEAKPLGARGLRWLKIHLANL--AG 642
Query: 643 VEKLSHDGRLAFVENHLYEIFDSAENPINGSRWWLTAEDPFQCLAACINLSEALKSSSPH 702
+K S D R+ FV HL +I+DSAE P+ G RWW A+DP+QCLA CI L AL S P
Sbjct: 643 YDKASFDERVEFVHEHLDDIYDSAERPLEGGRWWTKADDPWQCLATCIELKAALTSPDPE 702
Query: 703 SVISHLPIHQDGSCNGLQHYAALGRNTLEAAAVNLVAGEKPADVYSEIAVRVHEIMKRDS 762
+ LP+HQDG+CNGLQHYAALG + + AA VNL A ++P+DVY+ +A V + ++RD
Sbjct: 703 AYECALPVHQDGTCNGLQHYAALGGDAVGAAQVNLAAADRPSDVYTYVAKMVEDQIQRDL 762
Query: 763 NKDPSKHPQALLAKILIDQVDRKLVKQTVMTSVYGVTFVGAREQIKRRLEEKGHITDDRQ 822
+D HP AK+L ++ RK+VKQTVMT+VYGVTFVGAR+QI+R+L+++G + + Q
Sbjct: 763 KED---HP---FAKLLAGKISRKVVKQTVMTTVYGVTFVGARDQIERQLKDRGDVPIE-Q 815
Query: 823 LFAAACYAAKVTLTALGEIFEAARSIMGWLGDCAKVIAS--------------------E 862
+ AA Y AK L ++G++F+ A+ I WL CA+++A
Sbjct: 816 CWLAASYLAKKVLASIGDLFKGAKEIQTWLNTCARLVAKAIPQDRLVQSMTEPPPKAKRS 875
Query: 863 NQP---------VRWTTPLGLPVVQPYCKNERHLIRTSLQVLALQREG--NLVKIRKQRT 911
NQP V WTTPLGLP+VQPY +R + T+LQ + + + V +KQ +
Sbjct: 876 NQPRWKKEQMTSVVWTTPLGLPIVQPYRSIKRKQVMTALQTVFISDPNIPSTVNAQKQAS 935
Query: 912 AFPPNFVHSLDGSHMMMTAVACRDAGLHFAGL 943
AFPPNF+HSLD +HMM+TA+ CR GL FA +
Sbjct: 936 AFPPNFIHSLDATHMMLTALECRSQGLTFASV 967
>gi|25777802|gb|AAN75608.1| RPO41 [Cryptococcus neoformans var. neoformans]
Length = 1202
Score = 486 bits (1250), Expect = e-134, Method: Compositional matrix adjust.
Identities = 295/796 (37%), Positives = 445/796 (55%), Gaps = 81/796 (10%)
Query: 205 IEKRLAPNLPHIKGLFLGWFGPLSEAIEREQKMQRTKKQKA-AYAPHIELLPADKVAVIV 263
+EKR+A I L P S+A K T + K ++ LLP DK+A+I
Sbjct: 248 LEKRIASMQAEIDAL------PESKAAVTPPKYSATARMKPQVLLMYLSLLPVDKLALIT 301
Query: 264 MHKMMGLVMAGHEDRCVQVVQAAVHIGMAIEQEIRIHSF--LEKTKNYKRKKIIADTEEV 321
+ ++M + +G ++V++ V +G A+E E R + + +Y K I +
Sbjct: 302 ILEIMRMSGSGGIADGMKVLRGMVAVGKAVETEFRAETIKNVAGVDSYHWLKTIDPQTQK 361
Query: 322 LSKE--KELLRKRVNSLIKSKRV--MEAQKLL-------KNEETKPWGRDTQAKLGSRLV 370
S++ + +K ++KRV E K+L ++ T W R Q +GS LV
Sbjct: 362 PSRQLIGSVWKKIGEQANQAKRVGKNEGDKILPPNHDDMQDIWTPAWSRMIQLGVGSELV 421
Query: 371 ELLIETAYVQHPVNPADYSP--PDVRPAFRHRFKTILKHPGQKTTKRYGVVECDPLVLEG 428
+ L++ A V+ + +++PAF H ++ + K+ GV++ +P+V
Sbjct: 422 DALLKVAKVERTAKDRNTGEMITELQPAFTHAYEYV-------RGKKLGVIKLNPVVAAR 474
Query: 429 LDRSAKHMLI--PYVPMLVPPKKWKGYNKGGYLFLPSYVMRTHGSRKQQEALKSVTGNC- 485
L + ++I ++PMLV P+ W +NKGGYL VMR S +QQ+ LK+ +
Sbjct: 475 LAKDDIGVVIHPKHLPMLVEPRPWTAHNKGGYLLHSVPVMRYKESLEQQKWLKAASEEGH 534
Query: 486 MKKVFEALDTLGSTKWRVNKQVLSVLESIWVSGGNIAGLV---DRNDVLIPEKPLSEDMT 542
++ VF LD L ST WRVN++V V+ W G IA + D+ PEKP S D
Sbjct: 535 LEPVFHGLDVLSSTPWRVNRRVFDVVLESWNRGEPIADIPPSEDKAHYEFPEKPDSSDQD 594
Query: 543 EVQKWKWSVRKAKKINQER--HSQRCDTELKLSVARR-MKDEEGFYYPHNLDFRGRAYPM 599
+ ++ + + Q+R H++RC + +AR +KD FY PHN+DFRGRAYP+
Sbjct: 595 PQMRVQYVEKTKAVLAQQRKDHAERCKFNYNIEIARSYLKDT--FYLPHNMDFRGRAYPI 652
Query: 600 HPHLNHLSSDVCRGVLEFAEGRPLGKSGLRWLKIHLANLFSGGVEKLSHDGRLAFVENHL 659
PHL+ + D+CRG+L F +PLG++GL+WL+IHLAN++ G +K S R F + H
Sbjct: 653 PPHLSPVGDDLCRGLLTFGNQKPLGETGLKWLQIHLANVY--GYDKASFAERARFAQEHE 710
Query: 660 YEIFDSAENPINGSRWWLTAEDPFQCLAACINLSEALKSSSPHSVISHLPIHQDGSCNGL 719
+IFDSA++P++G RWWL AEDP+QCLA C L+ AL+S +P + S LP+HQDG+CNG+
Sbjct: 711 ADIFDSADHPLDGKRWWLKAEDPWQCLATCFELASALRSPNPSAYESSLPVHQDGTCNGM 770
Query: 720 QHYAALGRNTLEAAAVNLVAGEKPADVYSEIAVRVHEIMKRDSNKDPSKHPQALLAKILI 779
QHYAALG + A AVNL AG++PAD+Y+ + V+++++ D + H ALL K
Sbjct: 771 QHYAALGGDVRGAKAVNLEAGDRPADIYTGVVDIVNKVVEEDKK---AGHDIALLIK--- 824
Query: 780 DQVDRKLVKQTVMTSVYGVTFVGAREQIKRRLEEKGHITDDRQLFAAACYAAKVTLTALG 839
+ + RK+VKQTVMT+VYGVTFVGAR+QI ++L +G I + +FA + Y AK L +G
Sbjct: 825 EPLGRKVVKQTVMTTVYGVTFVGARDQIAKQLHARGDIAQE-HIFAVSSYIAKTVLNCIG 883
Query: 840 EIFEAARSIMGWLGDCAKVIASENQPVR------------------------------WT 869
++F A++IM WL A++I+ P R WT
Sbjct: 884 DLFSGAKAIMDWLTTSARLISRSIPPTRVQEAATNLTNTSRTGKVTSRAAKEFMSAVIWT 943
Query: 870 TPLGLPVVQPYCKNERHLIRTSLQVLALQREG--NLVKIRKQRTAFPPNFVHSLDGSHMM 927
TPLGLPVVQPY K + I T+LQ + + + V +KQ TAFPPNF+HSLD +HM+
Sbjct: 944 TPLGLPVVQPYRKAHKKQIMTALQSVYISDPNAPSEVSPQKQATAFPPNFIHSLDATHML 1003
Query: 928 MTAVACRDAGLHFAGL 943
+TA+ C+ L FA +
Sbjct: 1004 LTALKCKQNNLAFASV 1019
>gi|58266658|ref|XP_570485.1| hypothetical protein [Cryptococcus neoformans var. neoformans JEC21]
gi|134110360|ref|XP_776007.1| hypothetical protein CNBD0570 [Cryptococcus neoformans var.
neoformans B-3501A]
gi|50258675|gb|EAL21360.1| hypothetical protein CNBD0570 [Cryptococcus neoformans var.
neoformans B-3501A]
gi|57226718|gb|AAW43178.1| conserved hypothetical protein [Cryptococcus neoformans var.
neoformans JEC21]
Length = 1202
Score = 485 bits (1249), Expect = e-134, Method: Compositional matrix adjust.
Identities = 295/796 (37%), Positives = 445/796 (55%), Gaps = 81/796 (10%)
Query: 205 IEKRLAPNLPHIKGLFLGWFGPLSEAIEREQKMQRTKKQKA-AYAPHIELLPADKVAVIV 263
+EKR+A I L P S+A K T + K ++ LLP DK+A+I
Sbjct: 248 LEKRIASMQAEIDAL------PESKAAVTPPKYSATARMKPQVLLMYLSLLPVDKLALIT 301
Query: 264 MHKMMGLVMAGHEDRCVQVVQAAVHIGMAIEQEIRIHSF--LEKTKNYKRKKIIADTEEV 321
+ ++M + +G ++V++ V +G A+E E R + + +Y K I +
Sbjct: 302 ILEIMRMSGSGGIADGMKVLRGMVAVGKAVETEFRAETIKNVAGVDSYHWLKTIDPQTQK 361
Query: 322 LSKE--KELLRKRVNSLIKSKRV--MEAQKLL-------KNEETKPWGRDTQAKLGSRLV 370
S++ + +K ++KRV E K+L ++ T W R Q +GS LV
Sbjct: 362 PSRQLIGSVWKKIGEQANQAKRVGKNEGDKILPPNHDDMQDIWTPAWSRMIQLGVGSELV 421
Query: 371 ELLIETAYVQHPVNPADYSP--PDVRPAFRHRFKTILKHPGQKTTKRYGVVECDPLVLEG 428
+ L++ A V+ + +++PAF H ++ + K+ GV++ +P+V
Sbjct: 422 DALLKVAKVERTAKDRNTGEMITELQPAFTHAYEYV-------RGKKLGVIKLNPVVAAR 474
Query: 429 LDRSAKHMLI--PYVPMLVPPKKWKGYNKGGYLFLPSYVMRTHGSRKQQEALKSVTGNC- 485
L + ++I ++PMLV P+ W +NKGGYL VMR S +QQ+ LK+ +
Sbjct: 475 LAKDDIGVVIHPKHLPMLVEPRPWTAHNKGGYLLHSVPVMRYKESLEQQKWLKAASEEGH 534
Query: 486 MKKVFEALDTLGSTKWRVNKQVLSVLESIWVSGGNIAGLV---DRNDVLIPEKPLSEDMT 542
++ VF LD L ST WRVN++V V+ W G IA + D+ PEKP S D
Sbjct: 535 LEPVFHGLDVLSSTPWRVNRRVFDVVLESWNRGEPIADIPPSEDKAHYEFPEKPDSSDQD 594
Query: 543 EVQKWKWSVRKAKKINQER--HSQRCDTELKLSVARR-MKDEEGFYYPHNLDFRGRAYPM 599
+ ++ + + Q+R H++RC + +AR +KD FY PHN+DFRGRAYP+
Sbjct: 595 PQMRVQYVEKTKAVLAQQRKDHAERCKFNYNIEIARSYLKDT--FYLPHNMDFRGRAYPI 652
Query: 600 HPHLNHLSSDVCRGVLEFAEGRPLGKSGLRWLKIHLANLFSGGVEKLSHDGRLAFVENHL 659
PHL+ + D+CRG+L F +PLG++GL+WL+IHLAN++ G +K S R F + H
Sbjct: 653 PPHLSPVGDDLCRGLLTFGTKKPLGETGLKWLQIHLANVY--GYDKASFAERARFAQEHE 710
Query: 660 YEIFDSAENPINGSRWWLTAEDPFQCLAACINLSEALKSSSPHSVISHLPIHQDGSCNGL 719
+IFDSA++P++G RWWL AEDP+QCLA C L+ AL+S +P + S LP+HQDG+CNG+
Sbjct: 711 ADIFDSADHPLDGKRWWLKAEDPWQCLATCFELASALRSPNPSAYESSLPVHQDGTCNGM 770
Query: 720 QHYAALGRNTLEAAAVNLVAGEKPADVYSEIAVRVHEIMKRDSNKDPSKHPQALLAKILI 779
QHYAALG + A AVNL AG++PAD+Y+ + V+++++ D + H ALL K
Sbjct: 771 QHYAALGGDVRGAKAVNLEAGDRPADIYTGVVDIVNKVVEEDKK---AGHDIALLIK--- 824
Query: 780 DQVDRKLVKQTVMTSVYGVTFVGAREQIKRRLEEKGHITDDRQLFAAACYAAKVTLTALG 839
+ + RK+VKQTVMT+VYGVTFVGAR+QI ++L +G I + +FA + Y AK L +G
Sbjct: 825 EPLGRKVVKQTVMTTVYGVTFVGARDQIAKQLHARGDIAQE-HIFAVSSYIAKTVLNCIG 883
Query: 840 EIFEAARSIMGWLGDCAKVIASENQPVR------------------------------WT 869
++F A++IM WL A++I+ P R WT
Sbjct: 884 DLFSGAKAIMDWLTTSARLISRSIPPARVQEAATNLTNTSRTGKVTSRAAKEFMSAVIWT 943
Query: 870 TPLGLPVVQPYCKNERHLIRTSLQVLALQREG--NLVKIRKQRTAFPPNFVHSLDGSHMM 927
TPLGLPVVQPY K + I T+LQ + + + V +KQ TAFPPNF+HSLD +HM+
Sbjct: 944 TPLGLPVVQPYRKAHKKQIMTALQSVYISDPNAPSEVSPQKQATAFPPNFIHSLDATHML 1003
Query: 928 MTAVACRDAGLHFAGL 943
+TA+ C+ L FA +
Sbjct: 1004 LTALKCKQNNLAFASV 1019
>gi|58266656|ref|XP_570484.1| hypothetical protein [Cryptococcus neoformans var. neoformans JEC21]
gi|134110362|ref|XP_776008.1| hypothetical protein CNBD0570 [Cryptococcus neoformans var.
neoformans B-3501A]
gi|25956307|gb|AAN75721.1| RPO41 [Cryptococcus neoformans var. neoformans]
gi|50258676|gb|EAL21361.1| hypothetical protein CNBD0570 [Cryptococcus neoformans var.
neoformans B-3501A]
gi|57226717|gb|AAW43177.1| conserved hypothetical protein [Cryptococcus neoformans var.
neoformans JEC21]
Length = 1180
Score = 485 bits (1249), Expect = e-134, Method: Compositional matrix adjust.
Identities = 295/796 (37%), Positives = 445/796 (55%), Gaps = 81/796 (10%)
Query: 205 IEKRLAPNLPHIKGLFLGWFGPLSEAIEREQKMQRTKKQKA-AYAPHIELLPADKVAVIV 263
+EKR+A I L P S+A K T + K ++ LLP DK+A+I
Sbjct: 248 LEKRIASMQAEIDAL------PESKAAVTPPKYSATARMKPQVLLMYLSLLPVDKLALIT 301
Query: 264 MHKMMGLVMAGHEDRCVQVVQAAVHIGMAIEQEIRIHSF--LEKTKNYKRKKIIADTEEV 321
+ ++M + +G ++V++ V +G A+E E R + + +Y K I +
Sbjct: 302 ILEIMRMSGSGGIADGMKVLRGMVAVGKAVETEFRAETIKNVAGVDSYHWLKTIDPQTQK 361
Query: 322 LSKE--KELLRKRVNSLIKSKRV--MEAQKLL-------KNEETKPWGRDTQAKLGSRLV 370
S++ + +K ++KRV E K+L ++ T W R Q +GS LV
Sbjct: 362 PSRQLIGSVWKKIGEQANQAKRVGKNEGDKILPPNHDDMQDIWTPAWSRMIQLGVGSELV 421
Query: 371 ELLIETAYVQHPVNPADYSP--PDVRPAFRHRFKTILKHPGQKTTKRYGVVECDPLVLEG 428
+ L++ A V+ + +++PAF H ++ + K+ GV++ +P+V
Sbjct: 422 DALLKVAKVERTAKDRNTGEMITELQPAFTHAYEYV-------RGKKLGVIKLNPVVAAR 474
Query: 429 LDRSAKHMLI--PYVPMLVPPKKWKGYNKGGYLFLPSYVMRTHGSRKQQEALKSVTGNC- 485
L + ++I ++PMLV P+ W +NKGGYL VMR S +QQ+ LK+ +
Sbjct: 475 LAKDDIGVVIHPKHLPMLVEPRPWTAHNKGGYLLHSVPVMRYKESLEQQKWLKAASEEGH 534
Query: 486 MKKVFEALDTLGSTKWRVNKQVLSVLESIWVSGGNIAGLV---DRNDVLIPEKPLSEDMT 542
++ VF LD L ST WRVN++V V+ W G IA + D+ PEKP S D
Sbjct: 535 LEPVFHGLDVLSSTPWRVNRRVFDVVLESWNRGEPIADIPPSEDKAHYEFPEKPDSSDQD 594
Query: 543 EVQKWKWSVRKAKKINQER--HSQRCDTELKLSVARR-MKDEEGFYYPHNLDFRGRAYPM 599
+ ++ + + Q+R H++RC + +AR +KD FY PHN+DFRGRAYP+
Sbjct: 595 PQMRVQYVEKTKAVLAQQRKDHAERCKFNYNIEIARSYLKDT--FYLPHNMDFRGRAYPI 652
Query: 600 HPHLNHLSSDVCRGVLEFAEGRPLGKSGLRWLKIHLANLFSGGVEKLSHDGRLAFVENHL 659
PHL+ + D+CRG+L F +PLG++GL+WL+IHLAN++ G +K S R F + H
Sbjct: 653 PPHLSPVGDDLCRGLLTFGTKKPLGETGLKWLQIHLANVY--GYDKASFAERARFAQEHE 710
Query: 660 YEIFDSAENPINGSRWWLTAEDPFQCLAACINLSEALKSSSPHSVISHLPIHQDGSCNGL 719
+IFDSA++P++G RWWL AEDP+QCLA C L+ AL+S +P + S LP+HQDG+CNG+
Sbjct: 711 ADIFDSADHPLDGKRWWLKAEDPWQCLATCFELASALRSPNPSAYESSLPVHQDGTCNGM 770
Query: 720 QHYAALGRNTLEAAAVNLVAGEKPADVYSEIAVRVHEIMKRDSNKDPSKHPQALLAKILI 779
QHYAALG + A AVNL AG++PAD+Y+ + V+++++ D + H ALL K
Sbjct: 771 QHYAALGGDVRGAKAVNLEAGDRPADIYTGVVDIVNKVVEEDKK---AGHDIALLIK--- 824
Query: 780 DQVDRKLVKQTVMTSVYGVTFVGAREQIKRRLEEKGHITDDRQLFAAACYAAKVTLTALG 839
+ + RK+VKQTVMT+VYGVTFVGAR+QI ++L +G I + +FA + Y AK L +G
Sbjct: 825 EPLGRKVVKQTVMTTVYGVTFVGARDQIAKQLHARGDIAQE-HIFAVSSYIAKTVLNCIG 883
Query: 840 EIFEAARSIMGWLGDCAKVIASENQPVR------------------------------WT 869
++F A++IM WL A++I+ P R WT
Sbjct: 884 DLFSGAKAIMDWLTTSARLISRSIPPARVQEAATNLTNTSRTGKVTSRAAKEFMSAVIWT 943
Query: 870 TPLGLPVVQPYCKNERHLIRTSLQVLALQREG--NLVKIRKQRTAFPPNFVHSLDGSHMM 927
TPLGLPVVQPY K + I T+LQ + + + V +KQ TAFPPNF+HSLD +HM+
Sbjct: 944 TPLGLPVVQPYRKAHKKQIMTALQSVYISDPNAPSEVSPQKQATAFPPNFIHSLDATHML 1003
Query: 928 MTAVACRDAGLHFAGL 943
+TA+ C+ L FA +
Sbjct: 1004 LTALKCKQNNLAFASV 1019
>gi|54112152|gb|AAV28755.1| RPO41p [Cryptococcus gattii]
Length = 1180
Score = 485 bits (1249), Expect = e-134, Method: Compositional matrix adjust.
Identities = 291/798 (36%), Positives = 447/798 (56%), Gaps = 95/798 (11%)
Query: 223 WFGPLSEAIER-----EQKMQRTKKQKAAYAP----------------HIELLPADKVAV 261
W G L+ +ER + ++ + KA+ AP ++ LLP DK+A+
Sbjct: 240 WLGELTVELERRIASMQAEIDALPESKASVAPPKYSATARMKPQVLLMYLSLLPVDKLAL 299
Query: 262 IVMHKMMGLVMAGHEDRCVQVVQAAVHIGMAIEQEIRIHSF--LEKTKNYKRKKIIADTE 319
I + ++M + +G ++V++ V +G A+E E R + + +Y K I
Sbjct: 300 ITILEIMRMSGSGGIADGMKVLRGMVAVGKAVETEFRAETIKNVAGVDSYHWLKTIDPQT 359
Query: 320 EVLSKE--KELLRKRVNSLIKSKRVM--EAQKLL-------KNEETKPWGRDTQAKLGSR 368
+ S++ + +K ++KR+ EA+++L ++ T W R Q +GS
Sbjct: 360 QKPSRQLIGSVWKKIGEQANQAKRLGKGEAERILPPNHDDMQDIWTPAWSRMIQLGVGSE 419
Query: 369 LVELLIETAYVQHPVNPADYSP--PDVRPAFRHRFKTILKHPGQKTTKRYGVVECDPLVL 426
LV+ L++ A V+ + +++PAF H ++ + K+ GV++ +P+V
Sbjct: 420 LVDALLKVAKVERTARDRNTGEIVMELQPAFTHAYEYV-------RGKKLGVIKLNPVVA 472
Query: 427 EGLDRSAKHMLI--PYVPMLVPPKKWKGYNKGGYLFLPSYVMRTHGSRKQQEALKSVTGN 484
L + ++I ++PMLV P+ W +NKGGYL VMR S +QQ+ LK+ +
Sbjct: 473 ARLAKDDIGVVIHPKHLPMLVEPRPWTAHNKGGYLLHSVPVMRYKESLEQQKWLKAASEE 532
Query: 485 C-MKKVFEALDTLGSTKWRVNKQVLSVLESIWVSGGNIAGLV---DRNDVLIPEKPLSED 540
++ VF LD L ST WR+N++V V+ W G IA + D+ PEKP S D
Sbjct: 533 GHLEPVFHGLDVLSSTPWRINRRVFDVVLESWNKGEPIADIPPSEDKAHYEFPEKPDSSD 592
Query: 541 MTEVQKWKWSVRKAKKINQER--HSQRCDTELKLSVARR-MKDEEGFYYPHNLDFRGRAY 597
+ ++ + + Q+R H++RC + +AR +KD FY PHN+DFRGRAY
Sbjct: 593 QDPQVRVQYVEKTKAVLAQQRKDHAERCKFNYNIEIARSYLKDT--FYLPHNMDFRGRAY 650
Query: 598 PMHPHLNHLSSDVCRGVLEFAEGRPLGKSGLRWLKIHLANLFSGGVEKLSHDGRLAFVEN 657
P+ PHL+ + D+CRG+L F +PLG++GL+WL+IHLAN++ G +K S R F +
Sbjct: 651 PIPPHLSPVGDDLCRGLLTFGTKKPLGETGLKWLQIHLANVY--GYDKASFAERARFAQE 708
Query: 658 HLYEIFDSAENPINGSRWWLTAEDPFQCLAACINLSEALKSSSPHSVISHLPIHQDGSCN 717
H +IFDSA++P++G RWWL AEDP+QCLAAC L+ AL+S P + S LP+HQDG+CN
Sbjct: 709 HEADIFDSADHPLDGKRWWLKAEDPWQCLAACFELAAALRSPDPSAYESSLPVHQDGTCN 768
Query: 718 GLQHYAALGRNTLEAAAVNLVAGEKPADVYSEIAVRVHEIMKRDSNKDPSKHPQALLAKI 777
G+QHYAALG + A AVNL AG++PAD+Y+ + V+++++ D + H ALL K
Sbjct: 769 GMQHYAALGGDVRGAKAVNLEAGDRPADIYTGVVDIVNKVVEEDKK---AGHDIALLIK- 824
Query: 778 LIDQVDRKLVKQTVMTSVYGVTFVGAREQIKRRLEEKGHITDDRQLFAAACYAAKVTLTA 837
+ + RK+VKQTVMT+VYGVTFVGAR+QI ++L +G I + +FA + Y AK L
Sbjct: 825 --EPLGRKVVKQTVMTTVYGVTFVGARDQIAKQLHARGDIAQE-HIFAVSSYIAKTVLNC 881
Query: 838 LGEIFEAARSIMGWLGDCAKVIASENQPVR------------------------------ 867
+G++F A++IM WL A++I+ P R
Sbjct: 882 IGDLFSGAKAIMDWLTTSARLISRSIPPTRIQEAATNLTSTSRTGKVTSRAAKEFMSAVI 941
Query: 868 WTTPLGLPVVQPYCKNERHLIRTSLQVLALQREG--NLVKIRKQRTAFPPNFVHSLDGSH 925
WTTPLGLPVVQPY K + I T+LQ + + + V +KQ TAFPPNF+HSLD +H
Sbjct: 942 WTTPLGLPVVQPYRKAHKKQIMTALQSVYISDPNAPSEVSPQKQATAFPPNFIHSLDATH 1001
Query: 926 MMMTAVACRDAGLHFAGL 943
M++TA+ C+ L FA +
Sbjct: 1002 MLLTALKCKQNNLAFASV 1019
>gi|403413111|emb|CCL99811.1| predicted protein [Fibroporia radiculosa]
Length = 1321
Score = 484 bits (1246), Expect = e-134, Method: Compositional matrix adjust.
Identities = 276/750 (36%), Positives = 427/750 (56%), Gaps = 74/750 (9%)
Query: 242 KQKAAYAPHIELLPADKVAVIVMHKMMGLVMAGHEDRCVQVVQAAVHIGMAIEQEIRIHS 301
K+ A +P + LL +K+++I + ++M L G ++ +A + +G A+E E
Sbjct: 428 KRSAGLSPFLSLLTPEKLSLIAIMELMHLQGTGGVADGMKTARALLAVGKAVELE----- 482
Query: 302 FLEKTKNYKRKKIIADTEEVLSKEKELLRKRVNSLIKSKRVMEAQKLLKNEE--TKPWGR 359
K + K+ + T + + + ++++RV A+K +++ E T W +
Sbjct: 483 --HKAEMCKKSNLPIPTSSGRTSDHSFFTRLGYRDLQARRVA-ARKFMEDAEDWTTDWTQ 539
Query: 360 DTQAKLGSRLVELLIETAYVQHPV--NPADYSPPDVRPAFRHRFKTILKHPGQKTTKRYG 417
+ K+GS LV+ L++ A V + + +PAF H ++ + + + G
Sbjct: 540 VVRVKVGSFLVDALMDVATVMRTGVDKRTGEAISEEQPAFFHSYEYLRGY-------KLG 592
Query: 418 VVECDPLVLEGLDR-SAKHMLIP-YVPMLVPPKKWKGYNKGGYLFLPSYVMRTHGSRKQQ 475
V++ +PL+ E + + S + L P ++PMLV PK W +++GGYL+ ++VMR S++QQ
Sbjct: 593 VIKLNPLISEKMAKESIRETLHPRHLPMLVKPKPWLSHDQGGYLYNKTWVMRFKESQEQQ 652
Query: 476 EALK--SVTGNCMKKVFEALDTLGSTKWRVNKQVLSVLESIWVSGGNIAGLVDRN-DVLI 532
L+ S GN ++ ++ +LD LG+T W++N+++ ++ +W SG + D
Sbjct: 653 SYLRHASSLGN-LELIYASLDVLGNTPWKINRRIFDIVLEVWNSGTRWCKIPPAAFDAPE 711
Query: 533 PEKPLSEDMTEVQKWKWSVRKAKKI--NQERHSQRCDTELKLSVARRMKDEEGFYYPHNL 590
PEKP + D K + R+ + HS RC K+ +AR + Y+PHN+
Sbjct: 712 PEKPENFDTDPRAKMIYLTRQKQYALGRANNHSDRCSVNYKIEIARAFLGDT-IYFPHNV 770
Query: 591 DFRGRAYPMHPHLNHLSSDVCRGVLEFAEGRPLGKSGLRWLKIHLANLFSGGVEKLSHDG 650
DFRGRAYP+ PHL+H+ D+ RG+L F E +PLG+ GLRWLKIHLANL+ G +K + D
Sbjct: 771 DFRGRAYPLPPHLSHIGDDLSRGLLMFGEAKPLGERGLRWLKIHLANLY--GYDKANFDE 828
Query: 651 RLAFVENHLYEIFDSAENPINGSRWWLTAEDPFQCLAACINLSEALKSSSPHSVISHLPI 710
R++FV +HL +IFDSA+NP+ G +WW A+DP+QCLA CI L AL+S PH+ LP+
Sbjct: 829 RVSFVHDHLDDIFDSADNPLEGKKWWTKADDPWQCLATCIELKAALQSPDPHTYECALPV 888
Query: 711 HQDGSCNGLQHYAALGRNTLEAAAVNLVAGEKPADVYSEIAVRVHEIMKRDSNKDPSKHP 770
HQDG+CNGLQHYAALG + A VNL ++P+DVY+ +A V + M+ D D
Sbjct: 889 HQDGTCNGLQHYAALGGDAQGARQVNLDVTDRPSDVYTFVAEMVEKAMEEDVKLDHK--- 945
Query: 771 QALLAKILIDQVDRKLVKQTVMTSVYGVTFVGAREQIKRRLEEKGHITDDRQLFAAACYA 830
AK+L ++ RK+VKQTVMT+VYGVTF+GAREQI+++L+++G I + + + AA Y
Sbjct: 946 ---YAKMLTGKISRKVVKQTVMTTVYGVTFIGAREQIEKQLKDRGDIAAE-ECWLAASYV 1001
Query: 831 AKVTLTALGEIFEAARSIMGWLGDCAKVIASENQPVR----------------------- 867
AK L +G++F+ A+ I WL CA++IA P R
Sbjct: 1002 AKKVLLCIGDLFKGAKDIQTWLNSCARLIAKSIPPDRLDAATDVERTFGTGRKMVKSTEA 1061
Query: 868 ------------WTTPLGLPVVQPYCKNERHLIRTSLQVLALQREGN--LVKIRKQRTAF 913
WTTPLGLP+VQPY R I TSLQ + + + V KQ +AF
Sbjct: 1062 TRLKKEQMTSVVWTTPLGLPIVQPYRATRRKQIITSLQTVFISDPNSPTSVNASKQASAF 1121
Query: 914 PPNFVHSLDGSHMMMTAVACRDAGLHFAGL 943
PPNF+HSLD +HMM+TA+ C+ G+ FA +
Sbjct: 1122 PPNFIHSLDATHMMLTALECKTQGVTFASV 1151
>gi|56566235|gb|AAN75149.2| RPO41 [Cryptococcus neoformans var. grubii]
Length = 1202
Score = 483 bits (1244), Expect = e-133, Method: Compositional matrix adjust.
Identities = 295/800 (36%), Positives = 444/800 (55%), Gaps = 89/800 (11%)
Query: 205 IEKRLAPNLPHIKGLFLGWFGPLSEAIEREQKMQRTKKQKA-AYAPHIELLPADKVAVIV 263
+EKR+A I L P S+A K T + K ++ LLP DK+A+I
Sbjct: 248 LEKRIASMQAEIDAL------PESKAAVTPPKYSATARMKPQVLLMYLSLLPVDKLALIT 301
Query: 264 MHKMMGLVMAGHEDRCVQVVQAAVHIGMAIEQEIRIHSFLEKTKNYKRKKIIADTEEVLS 323
+ ++M + +G ++V++ V +G A+E E R E KN + +
Sbjct: 302 ILEIMRMSGSGGIADGMKVLRGMVAVGKAVETEFRA----ETIKNVAGVDSYHWLKTIDP 357
Query: 324 KEKELLRKRVNSLIK--SKRVMEAQKLLKNEE---------------TKPWGRDTQAKLG 366
+ ++ R+ + S+ K ++ +A+++ KNE T W R Q +G
Sbjct: 358 QTQKPSRQLIGSVWKKIGEQANQAKRVGKNEGGRILPPNHDDMQDIWTPAWSRMIQLGVG 417
Query: 367 SRLVELLIETAYVQHPVNPADYSP--PDVRPAFRHRFKTILKHPGQKTTKRYGVVECDPL 424
S LV+ L++ A V+ + +++PAF H ++ + K+ GV++ +P+
Sbjct: 418 SELVDALLKVAKVERTAKDRNTGEIITELQPAFTHAYEYV-------RGKKLGVIKLNPV 470
Query: 425 VLEGLDRSAKHMLI--PYVPMLVPPKKWKGYNKGGYLFLPSYVMRTHGSRKQQEALKSVT 482
V L + ++I ++PMLV P+ W +NKGGYL VMR S +QQ+ LK+ +
Sbjct: 471 VAARLAKDDIGVVIHPKHLPMLVEPRPWTAHNKGGYLLHSVPVMRYKESLEQQKWLKAAS 530
Query: 483 GNC-MKKVFEALDTLGSTKWRVNKQVLSVLESIWVSGGNIAGLV---DRNDVLIPEKPLS 538
++ VF LD L ST WRVN++V V+ W G IA + D+ PEKP S
Sbjct: 531 EEGHLEPVFHGLDVLSSTPWRVNRRVFDVVLESWNRGEPIADIPPSEDKAHYEFPEKPDS 590
Query: 539 EDMTEVQKWKWSVRKAKKINQER--HSQRCDTELKLSVARR-MKDEEGFYYPHNLDFRGR 595
D + ++ + + Q+R H++RC + +AR +KD FY PHN+DFRGR
Sbjct: 591 SDQDPQMRVQYVEKTKAVLAQQRKDHAERCKFNYNIEIARSYLKDI--FYLPHNMDFRGR 648
Query: 596 AYPMHPHLNHLSSDVCRGVLEFAEGRPLGKSGLRWLKIHLANLFSGGVEKLSHDGRLAFV 655
AYP+ PHL+ + D+CRG+L F +PLG++GL+WL+IHLAN++ G +K S R F
Sbjct: 649 AYPIPPHLSPVGDDLCRGLLTFGTKKPLGETGLKWLQIHLANVY--GYDKASFAERARFA 706
Query: 656 ENHLYEIFDSAENPINGSRWWLTAEDPFQCLAACINLSEALKSSSPHSVISHLPIHQDGS 715
+ H +IFDSA++P++G RWWL AEDP+QCLA C L+ AL+S P + S LP+HQDG+
Sbjct: 707 QEHEADIFDSADHPLDGKRWWLKAEDPWQCLATCFELAAALRSPIPSAYESSLPVHQDGT 766
Query: 716 CNGLQHYAALGRNTLEAAAVNLVAGEKPADVYSEIAVRVHEIMKRDSNKDPSKHPQALLA 775
CNG+QHYAALG + A AVNL AG++PAD+YS + V+++++ D + H ALL
Sbjct: 767 CNGMQHYAALGGDVRGAKAVNLEAGDRPADIYSGVVDIVNKVVEEDKK---AGHDIALLI 823
Query: 776 KILIDQVDRKLVKQTVMTSVYGVTFVGAREQIKRRLEEKGHITDDRQLFAAACYAAKVTL 835
K + + RK+VKQTVMT+VYGVTFVGAR+QI ++L +G I + +FA + Y AK L
Sbjct: 824 K---EPLGRKVVKQTVMTTVYGVTFVGARDQIAKQLHARGDIAQE-HIFAVSSYIAKTVL 879
Query: 836 TALGEIFEAARSIMGWLGDCAKVIASENQPVR---------------------------- 867
+G++F A++IM WL A++I+ P R
Sbjct: 880 NCIGDLFSGAKAIMDWLTTSARLISRSIPPTRVQEAATNLTSTSRTGKITSRAAKEFMSA 939
Query: 868 --WTTPLGLPVVQPYCKNERHLIRTSLQVLALQREG--NLVKIRKQRTAFPPNFVHSLDG 923
WTTPLGLPVVQPY K + I T+LQ + + + V +KQ TAFPPNF+HSLD
Sbjct: 940 VIWTTPLGLPVVQPYRKAHKKQIMTALQSVYISDPNAPSEVSPQKQATAFPPNFIHSLDA 999
Query: 924 SHMMMTAVACRDAGLHFAGL 943
+HM++TA+ C+ L FA +
Sbjct: 1000 THMLLTALKCKQNNLAFASV 1019
>gi|334362790|gb|AEG78585.1| RPO41 [Cryptococcus gattii]
Length = 1180
Score = 483 bits (1244), Expect = e-133, Method: Compositional matrix adjust.
Identities = 289/798 (36%), Positives = 447/798 (56%), Gaps = 95/798 (11%)
Query: 223 WFGPLSEAIER-----EQKMQRTKKQKAAYAP----------------HIELLPADKVAV 261
W G L+ +E+ + ++ + KA+ AP ++ LLP DK+A+
Sbjct: 240 WLGELTVELEKRIASMQAEIDALPESKASVAPPKYSATARMKPQVLLMYLSLLPVDKLAL 299
Query: 262 IVMHKMMGLVMAGHEDRCVQVVQAAVHIGMAIEQEIRIHSF--LEKTKNYKRKKIIADTE 319
I + ++M + +G ++V++ V +G A+E E R + + +Y K I
Sbjct: 300 ITILEIMRMSGSGGIADGMKVLRGMVAVGKAVETEFRAETIKNVAGVDSYHWLKTIDPQT 359
Query: 320 EVLSKE--KELLRKRVNSLIKSKRVM--EAQKLL-------KNEETKPWGRDTQAKLGSR 368
+ S++ + +K ++KR+ EA+++L ++ T W R Q +GS
Sbjct: 360 QKPSRQLIGSVWKKIGEQANQAKRLGKGEAERILPPNHDDMQDIWTPAWSRMIQLGVGSE 419
Query: 369 LVELLIETAYVQHPVNPADYSP--PDVRPAFRHRFKTILKHPGQKTTKRYGVVECDPLVL 426
LV+ L++ A V+ + +++PAF H ++ + K+ GV++ +P+V
Sbjct: 420 LVDALLKVAKVERTARDRNTGEIVMELQPAFTHAYEYV-------RGKKLGVIKLNPVVA 472
Query: 427 EGLDRSAKHMLI--PYVPMLVPPKKWKGYNKGGYLFLPSYVMRTHGSRKQQEALKSVTGN 484
L + ++I ++PMLV P+ W +NKGGYL VMR S +QQ+ LK+ +
Sbjct: 473 ARLAKDDIGVVIHPKHLPMLVEPRPWTAHNKGGYLLHSVPVMRYKESLEQQKWLKAASEE 532
Query: 485 C-MKKVFEALDTLGSTKWRVNKQVLSVLESIWVSGGNIAGLV---DRNDVLIPEKPLSED 540
++ VF LD L ST WR+N++V V+ W G IA + D+ PEKP S D
Sbjct: 533 GHLEPVFHGLDVLSSTPWRINRRVFDVVLESWNKGEPIADIPPSEDKAHYEFPEKPDSSD 592
Query: 541 MTEVQKWKWSVRKAKKINQER--HSQRCDTELKLSVARR-MKDEEGFYYPHNLDFRGRAY 597
+ ++ + + Q+R H++RC + +AR +KD FY PHN+DFRGRAY
Sbjct: 593 QDPQVRVQYVEKTKAVLAQQRKDHAERCKFNYNIEIARSYLKDT--FYLPHNMDFRGRAY 650
Query: 598 PMHPHLNHLSSDVCRGVLEFAEGRPLGKSGLRWLKIHLANLFSGGVEKLSHDGRLAFVEN 657
P+ PHL+ + D+CRG+L F +PLG++GL+WL+IHLAN++ G +K S R F +
Sbjct: 651 PIPPHLSPVGDDLCRGLLTFGTKKPLGETGLKWLQIHLANVY--GYDKASFAERARFAQE 708
Query: 658 HLYEIFDSAENPINGSRWWLTAEDPFQCLAACINLSEALKSSSPHSVISHLPIHQDGSCN 717
H +IFDSA++P++G RWWL AEDP+QCLA C L+ AL+S +P + S LP+HQDG+CN
Sbjct: 709 HEADIFDSADHPLDGKRWWLKAEDPWQCLATCFELAAALRSPNPSAYESSLPVHQDGTCN 768
Query: 718 GLQHYAALGRNTLEAAAVNLVAGEKPADVYSEIAVRVHEIMKRDSNKDPSKHPQALLAKI 777
G+QHYAALG + A AVNL AG++PAD+Y+ + V+++++ D + H ALL K
Sbjct: 769 GMQHYAALGGDVRGAKAVNLEAGDRPADIYTGVVDIVNKVVEEDKK---AGHDIALLIK- 824
Query: 778 LIDQVDRKLVKQTVMTSVYGVTFVGAREQIKRRLEEKGHITDDRQLFAAACYAAKVTLTA 837
+ + RK+VKQTVMT+VYGVTFVGAR+QI ++L +G I + +FA + Y AK L
Sbjct: 825 --EPLGRKVVKQTVMTTVYGVTFVGARDQIAKQLHARGDIAQE-HIFAVSSYIAKTVLNC 881
Query: 838 LGEIFEAARSIMGWLGDCAKVIASENQPVR------------------------------ 867
+G++F A++IM WL A++I+ P R
Sbjct: 882 IGDLFSGAKAIMDWLSTSARLISRSIPPTRIQEAATNLTSTSRTGKVTSRAAKEFMSAVI 941
Query: 868 WTTPLGLPVVQPYCKNERHLIRTSLQVLALQREG--NLVKIRKQRTAFPPNFVHSLDGSH 925
WTTPLGLPVVQPY K + I T+LQ + + + V +KQ TAFPPNF+HSLD +H
Sbjct: 942 WTTPLGLPVVQPYRKAHKKQIMTALQSVYISDPNAPSEVSPQKQATAFPPNFIHSLDATH 1001
Query: 926 MMMTAVACRDAGLHFAGL 943
M++TA+ C+ L FA +
Sbjct: 1002 MLLTALKCKQNNLAFASV 1019
>gi|334362824|gb|AEG78618.1| RPO41 [Cryptococcus gattii]
Length = 1180
Score = 483 bits (1242), Expect = e-133, Method: Compositional matrix adjust.
Identities = 289/798 (36%), Positives = 447/798 (56%), Gaps = 95/798 (11%)
Query: 223 WFGPLSEAIER-----EQKMQRTKKQKAAYAP----------------HIELLPADKVAV 261
W G L+ +E+ + ++ + KA+ AP ++ LLP DK+A+
Sbjct: 240 WLGELTVELEKRIASMQAEIDALPESKASVAPPKYSATARMKPQVLLMYLSLLPVDKLAL 299
Query: 262 IVMHKMMGLVMAGHEDRCVQVVQAAVHIGMAIEQEIRIHSF--LEKTKNYKRKKIIADTE 319
I + ++M + +G ++V++ V +G A+E E R + + +Y K I
Sbjct: 300 ITILEIMRMSGSGGIADGMKVLRGMVAVGKAVETEFRAETIKNVAGVDSYHWLKTIDPQT 359
Query: 320 EVLSKE--KELLRKRVNSLIKSKRVM--EAQKLL-------KNEETKPWGRDTQAKLGSR 368
+ S++ + +K ++KR+ EA+++L ++ T W R Q +GS
Sbjct: 360 QKPSRQLIGSVWKKIGEQANQAKRLGKGEAERILPPNHDDMQDIWTPAWSRMIQLGVGSE 419
Query: 369 LVELLIETAYVQHPVNPADYSP--PDVRPAFRHRFKTILKHPGQKTTKRYGVVECDPLVL 426
LV+ L++ A V+ + +++PAF H ++ + K+ GV++ +P+V
Sbjct: 420 LVDALLKVAKVERTARDRNTGEIVMELQPAFTHAYEYV-------RGKKLGVIKLNPVVA 472
Query: 427 EGLDRSAKHMLI--PYVPMLVPPKKWKGYNKGGYLFLPSYVMRTHGSRKQQEALKSVTGN 484
L + ++I ++PMLV P+ W +NKGGYL VMR S +QQ+ LK+ +
Sbjct: 473 ARLAKDDIGVVIHPKHLPMLVEPRPWTAHNKGGYLLHSVPVMRYKESLEQQKWLKAASEE 532
Query: 485 C-MKKVFEALDTLGSTKWRVNKQVLSVLESIWVSGGNIAGLV---DRNDVLIPEKPLSED 540
++ VF LD L ST WR+N++V V+ W G IA + D+ PEKP S D
Sbjct: 533 GHLEPVFHGLDVLSSTPWRINRRVFDVVLESWNKGEPIADIPPSEDKAHYEFPEKPDSSD 592
Query: 541 MTEVQKWKWSVRKAKKINQER--HSQRCDTELKLSVARR-MKDEEGFYYPHNLDFRGRAY 597
+ ++ + + Q+R H++RC + +AR +KD FY PHN+DFRGRAY
Sbjct: 593 QDPQVRVQYVEKTKAVLAQQRKDHAERCKFNYNIEIARSYLKDT--FYLPHNMDFRGRAY 650
Query: 598 PMHPHLNHLSSDVCRGVLEFAEGRPLGKSGLRWLKIHLANLFSGGVEKLSHDGRLAFVEN 657
P+ PHL+ + D+CRG+L F +PLG++GL+WL+IHLAN++ G +K S R F +
Sbjct: 651 PIPPHLSPVGDDLCRGLLTFGTKKPLGETGLKWLQIHLANVY--GYDKASFAERARFAQE 708
Query: 658 HLYEIFDSAENPINGSRWWLTAEDPFQCLAACINLSEALKSSSPHSVISHLPIHQDGSCN 717
H +IFDSA++P++G RWWL AEDP+QCLA C L+ AL+S +P + S LP+HQDG+CN
Sbjct: 709 HEADIFDSADHPLDGKRWWLKAEDPWQCLATCFELAAALRSPNPSAYESSLPVHQDGTCN 768
Query: 718 GLQHYAALGRNTLEAAAVNLVAGEKPADVYSEIAVRVHEIMKRDSNKDPSKHPQALLAKI 777
G+QHYAALG + A AVNL AG++PAD+Y+ + V+++++ D + H ALL K
Sbjct: 769 GMQHYAALGGDVRGAKAVNLEAGDRPADIYTGVVDIVNKVVEEDKK---AGHDIALLIK- 824
Query: 778 LIDQVDRKLVKQTVMTSVYGVTFVGAREQIKRRLEEKGHITDDRQLFAAACYAAKVTLTA 837
+ + RK+VKQTVMT+VYGVTFVGAR+QI ++L +G I + +FA + Y AK L
Sbjct: 825 --EPLGRKVVKQTVMTTVYGVTFVGARDQIAKQLHARGDIAQE-HIFAVSSYIAKTVLNC 881
Query: 838 LGEIFEAARSIMGWLGDCAKVIASENQPVR------------------------------ 867
+G++F A++IM WL A++I+ P R
Sbjct: 882 IGDLFSGAKAIMDWLTTSARLISRSIPPTRIQEAATNLTSTSRTGKVTSRAAKEFMSAVI 941
Query: 868 WTTPLGLPVVQPYCKNERHLIRTSLQVLALQREG--NLVKIRKQRTAFPPNFVHSLDGSH 925
WTTPLGLPVVQPY K + I T+LQ + + + V +KQ TAFPPNF+HSLD +H
Sbjct: 942 WTTPLGLPVVQPYRKAHKKQIMTALQSVYISDPNAPSEVSPQKQATAFPPNFIHSLDATH 1001
Query: 926 MMMTAVACRDAGLHFAGL 943
M++TA+ C+ L FA +
Sbjct: 1002 MLLTALKCKQNNLAFASV 1019
>gi|405119910|gb|AFR94681.1| mitochondrial-related RNA polymerase [Cryptococcus neoformans var.
grubii H99]
Length = 1324
Score = 482 bits (1241), Expect = e-133, Method: Compositional matrix adjust.
Identities = 293/800 (36%), Positives = 445/800 (55%), Gaps = 89/800 (11%)
Query: 205 IEKRLAPNLPHIKGLFLGWFGPLSEAIEREQKMQRTKKQKA-AYAPHIELLPADKVAVIV 263
+EKR+A I L P S+A K T + K ++ LLP DK+A+I
Sbjct: 370 LEKRIASMQAEIDAL------PESKAAVTPPKYSATARMKPQVLLMYLSLLPVDKLALIT 423
Query: 264 MHKMMGLVMAGHEDRCVQVVQAAVHIGMAIEQEIRIHSFLEKTKNYKRKKIIADTEEVLS 323
+ ++M + +G ++V++ V +G A+E E R E KN + +
Sbjct: 424 ILEIMRMSGSGGIADGMKVLRGMVAVGKAVETEFRA----ETIKNVAGVDSYHWLKTIDP 479
Query: 324 KEKELLRKRVNSLIK--SKRVMEAQKLLKNEE---------------TKPWGRDTQAKLG 366
+ ++ R+ + S+ K ++ +A+++ KNE T W R Q +G
Sbjct: 480 QTQKPSRQLIGSVWKKIGEQANQAKRVGKNEGGGILPPNHDDMQDIWTPAWSRMIQLGVG 539
Query: 367 SRLVELLIETAYVQHPVNPADYSP--PDVRPAFRHRFKTILKHPGQKTTKRYGVVECDPL 424
S LV+ L++ A V+ + +++PAF H ++ + K+ GV++ +P+
Sbjct: 540 SELVDALLKVAKVERTAKDRNTGEIITELQPAFTHAYEYV-------RGKKLGVIKLNPV 592
Query: 425 VLEGLDRSAKHMLI--PYVPMLVPPKKWKGYNKGGYLFLPSYVMRTHGSRKQQEALKSVT 482
V L + ++I ++PMLV P+ W +NKGGYL VMR S +QQ+ LK+ +
Sbjct: 593 VAARLAKDDIGVVIHPKHLPMLVEPRPWTAHNKGGYLLHSVPVMRYKESLEQQKWLKAAS 652
Query: 483 GNC-MKKVFEALDTLGSTKWRVNKQVLSVLESIWVSGGNIAGLV---DRNDVLIPEKPLS 538
++ VF LD L ST WRVN++V V+ W G IA + D+ PEKP S
Sbjct: 653 EEGHLEPVFHGLDVLSSTPWRVNRRVFDVVLESWNRGEPIADIPPSEDKAHYEFPEKPDS 712
Query: 539 EDMTEVQKWKWSVRKAKKINQER--HSQRCDTELKLSVARR-MKDEEGFYYPHNLDFRGR 595
D + ++ + + Q+R H++RC + +AR +KD FY PHN+DFRGR
Sbjct: 713 SDQDPQMRVQYVEKTKAVLAQQRKDHAERCKFNYNIEIARSYLKDI--FYLPHNMDFRGR 770
Query: 596 AYPMHPHLNHLSSDVCRGVLEFAEGRPLGKSGLRWLKIHLANLFSGGVEKLSHDGRLAFV 655
AYP+ PHL+ + D+CRG+L F +PLG++GL+WL+IHLAN++ G +K S R F
Sbjct: 771 AYPIPPHLSPVGDDLCRGLLTFGTKKPLGETGLKWLQIHLANVY--GYDKASFAERARFA 828
Query: 656 ENHLYEIFDSAENPINGSRWWLTAEDPFQCLAACINLSEALKSSSPHSVISHLPIHQDGS 715
+ H +IFDSA++P++G RWWL AEDP+QCLA C L+ AL+S +P + S LP+HQDG+
Sbjct: 829 QEHEADIFDSADHPLDGKRWWLKAEDPWQCLATCFELAAALRSPNPSAYESSLPVHQDGT 888
Query: 716 CNGLQHYAALGRNTLEAAAVNLVAGEKPADVYSEIAVRVHEIMKRDSNKDPSKHPQALLA 775
CNG+QHYAALG + A AVNL AG++PAD+Y+ + V+++++ D + H ALL
Sbjct: 889 CNGMQHYAALGGDVRGAKAVNLEAGDRPADIYTGVVDIVNKVVEEDKK---AGHDIALLI 945
Query: 776 KILIDQVDRKLVKQTVMTSVYGVTFVGAREQIKRRLEEKGHITDDRQLFAAACYAAKVTL 835
K + + RK+VKQTVMT+VYGVTFVGAR+QI ++L +G I + +FA + Y AK L
Sbjct: 946 K---EPLGRKVVKQTVMTTVYGVTFVGARDQIAKQLHARGDIAQE-HIFAVSSYIAKTVL 1001
Query: 836 TALGEIFEAARSIMGWLGDCAKVIASENQPVR---------------------------- 867
+G++F A++IM WL A++I+ P R
Sbjct: 1002 NCIGDLFSGAKAIMDWLTTSARLISRSIPPTRVQEAATNLTSTSRTGKITSRAAKEFMSA 1061
Query: 868 --WTTPLGLPVVQPYCKNERHLIRTSLQVLALQREG--NLVKIRKQRTAFPPNFVHSLDG 923
WTTPLGLPVVQPY K + I T+LQ + + + V +KQ TAFPPNF+HSLD
Sbjct: 1062 VIWTTPLGLPVVQPYRKAHKKQIMTALQSVYISDPNAPSEVSPQKQATAFPPNFIHSLDA 1121
Query: 924 SHMMMTAVACRDAGLHFAGL 943
+HM++TA+ C+ + FA +
Sbjct: 1122 THMLLTALKCKQNNVAFASV 1141
>gi|25573208|gb|AAN75176.1| RPO41 [Cryptococcus neoformans var. grubii]
Length = 1180
Score = 482 bits (1240), Expect = e-133, Method: Compositional matrix adjust.
Identities = 293/800 (36%), Positives = 445/800 (55%), Gaps = 89/800 (11%)
Query: 205 IEKRLAPNLPHIKGLFLGWFGPLSEAIEREQKMQRTKKQKA-AYAPHIELLPADKVAVIV 263
+EKR+A I L P S+A K T + K ++ LLP DK+A+I
Sbjct: 248 LEKRIASMQAEIDAL------PESKAAVTPPKYSATARMKPQVLLMYLSLLPVDKLALIT 301
Query: 264 MHKMMGLVMAGHEDRCVQVVQAAVHIGMAIEQEIRIHSFLEKTKNYKRKKIIADTEEVLS 323
+ ++M + +G ++V++ V +G A+E E R E KN + +
Sbjct: 302 ILEIMRMSGSGGIADGMKVLRGMVAVGKAVETEFRA----ETIKNVAGVDSYHWLKTIDP 357
Query: 324 KEKELLRKRVNSLIK--SKRVMEAQKLLKNEE---------------TKPWGRDTQAKLG 366
+ ++ R+ + S+ K ++ +A+++ KNE T W R Q +G
Sbjct: 358 QTQKPSRQLIGSVWKKIGEQANQAKRVGKNEGGGILPPNHDDMQDIWTPAWSRMIQLGVG 417
Query: 367 SRLVELLIETAYVQHPVNPADYSP--PDVRPAFRHRFKTILKHPGQKTTKRYGVVECDPL 424
S LV+ L++ A V+ + +++PAF H ++ + K+ GV++ +P+
Sbjct: 418 SELVDALLKVAKVERTAKDRNTGEIITELQPAFTHAYEYV-------RGKKLGVIKLNPV 470
Query: 425 VLEGLDRSAKHMLI--PYVPMLVPPKKWKGYNKGGYLFLPSYVMRTHGSRKQQEALKSVT 482
V L + ++I ++PMLV P+ W +NKGGYL VMR S +QQ+ LK+ +
Sbjct: 471 VAARLAKDDIGVVIHPKHLPMLVEPRPWTAHNKGGYLLHSVPVMRYKESLEQQKWLKAAS 530
Query: 483 GNC-MKKVFEALDTLGSTKWRVNKQVLSVLESIWVSGGNIAGLV---DRNDVLIPEKPLS 538
++ VF LD L ST WRVN++V V+ W G IA + D+ PEKP S
Sbjct: 531 EEGHLEPVFHGLDVLSSTPWRVNRRVFDVVLESWNRGEPIADIPPSEDKAHYEFPEKPDS 590
Query: 539 EDMTEVQKWKWSVRKAKKINQER--HSQRCDTELKLSVARR-MKDEEGFYYPHNLDFRGR 595
D + ++ + + Q+R H++RC + +AR +KD FY PHN+DFRGR
Sbjct: 591 SDQDPQMRVQYVEKTKAVLAQQRKDHAERCKFNYNIEIARSYLKDI--FYLPHNMDFRGR 648
Query: 596 AYPMHPHLNHLSSDVCRGVLEFAEGRPLGKSGLRWLKIHLANLFSGGVEKLSHDGRLAFV 655
AYP+ PHL+ + D+CRG+L F +PLG++GL+WL+IHLAN++ G +K S R F
Sbjct: 649 AYPIPPHLSPVGDDLCRGLLTFGTKKPLGETGLKWLQIHLANVY--GYDKASFAERARFA 706
Query: 656 ENHLYEIFDSAENPINGSRWWLTAEDPFQCLAACINLSEALKSSSPHSVISHLPIHQDGS 715
+ H +IFDSA++P++G RWWL AEDP+QCLA C L+ AL+S +P + S LP+HQDG+
Sbjct: 707 QEHEADIFDSADHPLDGKRWWLKAEDPWQCLATCFELAAALRSPNPSAYESSLPVHQDGT 766
Query: 716 CNGLQHYAALGRNTLEAAAVNLVAGEKPADVYSEIAVRVHEIMKRDSNKDPSKHPQALLA 775
CNG+QHYAALG + A AVNL AG++PAD+Y+ + V+++++ D + H ALL
Sbjct: 767 CNGMQHYAALGGDVRGAKAVNLEAGDRPADIYTGVVDIVNKVVEEDKK---AGHDIALLI 823
Query: 776 KILIDQVDRKLVKQTVMTSVYGVTFVGAREQIKRRLEEKGHITDDRQLFAAACYAAKVTL 835
K + + RK+VKQTVMT+VYGVTFVGAR+QI ++L +G I + +FA + Y AK L
Sbjct: 824 K---EPLGRKVVKQTVMTTVYGVTFVGARDQIAKQLHARGDIAQE-HIFAVSSYIAKTVL 879
Query: 836 TALGEIFEAARSIMGWLGDCAKVIASENQPVR---------------------------- 867
+G++F A++IM WL A++I+ P R
Sbjct: 880 NCIGDLFSGAKAIMDWLTTSARLISRSIPPTRVQEAATNLTSTSRTGKITSRAAKEFMSA 939
Query: 868 --WTTPLGLPVVQPYCKNERHLIRTSLQVLALQREG--NLVKIRKQRTAFPPNFVHSLDG 923
WTTPLGLPVVQPY K + I T+LQ + + + V +KQ TAFPPNF+HSLD
Sbjct: 940 VIWTTPLGLPVVQPYRKAHKKQIMTALQSVYISDPNAPSEVSPQKQATAFPPNFIHSLDA 999
Query: 924 SHMMMTAVACRDAGLHFAGL 943
+HM++TA+ C+ + FA +
Sbjct: 1000 THMLLTALKCKQNNVAFASV 1019
>gi|347838129|emb|CCD52701.1| similar to mitochondrial DNA-directed RNA polymerase [Botryotinia
fuckeliana]
Length = 1399
Score = 481 bits (1238), Expect = e-133, Method: Compositional matrix adjust.
Identities = 291/841 (34%), Positives = 441/841 (52%), Gaps = 88/841 (10%)
Query: 169 EMKKRKFNLLRRRQVKQETEAWERMVDEYKELEAKMIEKRLAPNL--PHIKGLFLGWFGP 226
+M K R Q + E +A + +D +++ + L+ +L + W
Sbjct: 347 DMSKMSEEQQRAIQAQLEEDAVQAAIDRWRDESVNLTRLGLSTSLQSKSLGARMWKWHVA 406
Query: 227 LSEAI--------EREQKMQRTKKQ--KAAYAPHIELLPADKVAVIVMHKMMGLVMAGHE 276
L++ + E E K R+ + + Y P + LPA+K+A + + M + +
Sbjct: 407 LTDTLKEELKAIDEAEMKQHRSTEDISRCEYGPFLRYLPAEKLAALTIIAHMHALSSSGI 466
Query: 277 DRCVQVVQAAVHIGMAIEQEIRIHSFLEKTKNYKRKKIIADTEEVL------SKEKELLR 330
D+ + + + + I ++E E + + +AD L + L
Sbjct: 467 DKGLTLSFSILQIAKSVEDESIFETIQQNMAKPSWSDSVADRVRTLRILKAKAHGNSELT 526
Query: 331 KRVNSLIKSKRVMEAQKLLKNEETKPWGRDTQAKLGSRLVELLIETAYVQ----HPVNPA 386
NS S + ++ +E W +AK+GS L+E L++ A V HP
Sbjct: 527 DNTNSTSFSPDAFVSSQIRAHE----WSVGIKAKVGSFLLESLLKVAKVPVTMVHP--ET 580
Query: 387 DYSPPDVRPAFRHRFKTILKHPGQKTTKRYGVVECDPLVLEGLDRSAKH-MLIPYVPMLV 445
+ + ++PAF H + + ++ GV+ + +++E L R H +L ++PMLV
Sbjct: 581 NETVTQMQPAFSHAQQ-------YRMGRKLGVINANKVIVEQLKREPVHSLLAKHLPMLV 633
Query: 446 PPKKWKGYNKGGYLFLPSYVMRTHGSRKQQE--ALKSVTGNCMKKVFEALDTLGSTKWRV 503
P+ W G++ GG+L P VMR Q A ++ + VF+ L+ LG WR+
Sbjct: 634 KPEPWTGFSSGGFLKHPGRVMRVKNGDADQRNYADAAIDRGNLSTVFKGLNILGEQSWRI 693
Query: 504 NKQVLSVLESIWVSGGNIAGLV-DRNDVLIPEKP-LSEDMTEVQKWKWSVRKAKKINQER 561
N+ V ++ W SG IA L D+ + P +P S D E ++W +V+K +
Sbjct: 694 NQPVFDIMLEAWNSGDAIANLAPDKPKLDYPPEPETSSDPLERRRWVTAVKKVENSKSSF 753
Query: 562 HSQRCDTELKLSVARRMKDEEGFYYPHNLDFRGRAYPMHPHLNHLSSDVCRGVLEFAEGR 621
HSQRC +L +AR ++D+ FY+PHN+DFRGRAYP+ P+LNH+ +D CRG++ F G+
Sbjct: 754 HSQRCFQNFQLEIARALRDKT-FYFPHNVDFRGRAYPIPPYLNHMGADHCRGLMMFGTGK 812
Query: 622 PLGKSGLRWLKIHLANLFSGGVEKLSHDGRLAFVENHLYEIFDSAENPINGSRWWLTAED 681
LG SGLRWLK+HLAN++ G +K S R F ++ EI+DSA NP+ G RWWL AED
Sbjct: 813 ALGNSGLRWLKVHLANVY--GFDKASLQEREEFASKNIDEIYDSATNPLGGKRWWLQAED 870
Query: 682 PFQCLAACINLSEALKSSSPHSVISHLPIHQDGSCNGLQHYAALGRNTLEAAAVNLVAGE 741
P+QCLAAC+ AL+S P S +S+LP+HQDG+CNGLQHYAALG + A VNL G+
Sbjct: 871 PWQCLAACMEFKNALESGDPASFVSYLPVHQDGTCNGLQHYAALGGDVWGAQQVNLEPGD 930
Query: 742 KPADVYSEIAVRVHEIMKRDSNKDPSKHPQALLAKILIDQVDRKLVKQTVMTSVYGVTFV 801
+PADVY+ +A V E + +D K AKIL ++ RK+VKQTVMT+VYGVTF+
Sbjct: 931 RPADVYTAVADLVKESIAKDLLAGQPK------AKILNGKITRKVVKQTVMTNVYGVTFI 984
Query: 802 GAREQIKRRL-EEKGHITDDRQLFAA--ACYAAKVTLTALGEIFEAARSIMGWLGDCAKV 858
GA+ Q++++L + D+ ++ A Y TAL +F+ A I WLGDCA
Sbjct: 985 GAKAQVRKQLVAAHKDLPDNDEINPGTLASYVVTKIFTALSTMFKGAHDIQYWLGDCASR 1044
Query: 859 IASENQP----------------------------------VRWTTPLGLPVVQPYCKNE 884
I++ P V WTTPL LPVVQPY ++
Sbjct: 1045 ISNSLTPEQIERIVAQASEQEGRPSKRAALALDEISQFKSSVIWTTPLNLPVVQPYRTHK 1104
Query: 885 RHLIRTSLQVLALQR--EGNLVKIRKQRTAFPPNFVHSLDGSHMMMTAVACRDAGLHFAG 942
L+RT+LQ+L+L + V RKQ AFPPNF+HSLD +HM+++AV C +A L FA
Sbjct: 1105 SRLVRTNLQLLSLSEPHRSDPVSSRKQLQAFPPNFIHSLDATHMLLSAVKCNEAKLAFAA 1164
Query: 943 L 943
+
Sbjct: 1165 V 1165
>gi|395323448|gb|EJF55919.1| DNA/RNA polymerase [Dichomitus squalens LYAD-421 SS1]
Length = 1273
Score = 481 bits (1237), Expect = e-132, Method: Compositional matrix adjust.
Identities = 283/769 (36%), Positives = 435/769 (56%), Gaps = 83/769 (10%)
Query: 227 LSEAIEREQKMQRTKKQKAAYAPHIELLPADKVAVIVMHKMMGLVMAGHEDRCVQVVQAA 286
+ E I K + TK ++ +P + +L +K+++I + +MM L +G ++ +A
Sbjct: 368 VEERILARMKRRSTKSEEILLSPFLRMLSPEKLSLITIMEMMNLHGSGGVQDGMKTARAL 427
Query: 287 VHIGMAIEQEIRIHSFLEKTKNYKRKKIIADTEEVLSKE---KELLRKRVNSLIKSKRVM 343
+ +G A+E E K + K+ I V + + + + ++RV
Sbjct: 428 LSVGRAVEAE-------HKAEICKKNNISIPVPAVNAPRAGVQNIFTGDGYKDLYARRVT 480
Query: 344 EAQKLLKNEE-TKPWGRDTQAKLGSRLVELLIETAYV----QHPVNPADYSPPDVRPAFR 398
A+ + EE T W + + K+GS L++ +++ A V Q P ++ + +PAF
Sbjct: 481 AAKYMEDAEEWTSDWSQLIRVKVGSFLLDCIMDVATVSRTIQDPRTGEKFT--EEQPAFS 538
Query: 399 HRFKTILKHPGQKTTKRYGVVECDPLVLEGL--DRSAKHMLIPYVPMLVPPKKWKGYNKG 456
H ++ + ++ GV++ +P V + + D A + ++PMLV PK W YN G
Sbjct: 539 HSYEY-------QRGRKLGVIKFNPAVADRMSKDPIADTLHPRHLPMLVKPKPWLSYNNG 591
Query: 457 GYLFLPSYVMRTHGSRKQQEALKSVT-GNCMKKVFEALDTLGSTKWRVNKQVLSVLESIW 515
GYL+ S+ MR SR+Q+ L+ + ++ VF LD LGST W++N++V V+ +W
Sbjct: 592 GYLYSRSWAMRFKDSREQEIYLRHASEAGRLELVFAGLDVLGSTPWQINRRVFDVVLQVW 651
Query: 516 VSGGNIA----GLVDRNDVLIPEKPLSEDMTEV----QKWKWSVRKAKKINQERHSQRCD 567
SG A + D + + PE +++ +V ++ +W KA HS RC
Sbjct: 652 NSGERFAKIPPAIPDEPEPVRPENMDTDNKAKVVYLERQRQWMQNKAAN-----HSDRCS 706
Query: 568 TELKLSVARRMKDEEGFYYPHNLDFRGRAYPMHPHLNHLSSDVCRGVLEFAEGRPLGKSG 627
K+ +AR + Y PHN+DFRGRAYP+ PHL+H+ D+ RG+L F E +PLG G
Sbjct: 707 VNYKVEIARAFLGDT-IYLPHNVDFRGRAYPIPPHLSHIGDDLSRGLLIFEEKKPLGTRG 765
Query: 628 LRWLKIHLANLFSGGVEKLSHDGRLAFVENHLYEIFDSAENPINGSRWWLTAEDPFQCLA 687
LRWLKIHLANL+ G +K S D R+ +V HL +IFDSA+ P+ G RWW A+DP+QCLA
Sbjct: 766 LRWLKIHLANLY--GYDKASFDERVEYVHKHLEDIFDSADKPLEGRRWWTKADDPWQCLA 823
Query: 688 ACINLSEALKSSSPHSVISHLPIHQDGSCNGLQHYAALGRNTLEAAAVNLVAGEKPADVY 747
C+ L+ AL+S P + LP+HQDG+CNGLQHYAALG + AA VNL A ++P+DVY
Sbjct: 824 TCMELTSALRSPDPEAYECGLPVHQDGTCNGLQHYAALGGDAQGAAQVNLAAADRPSDVY 883
Query: 748 SEIAVRVHEIMKRDSNKDPSKHPQALLAKILIDQVDRKLVKQTVMTSVYGVTFVGAREQI 807
+ +A V + ++ D KD +AK+L +V RK+VKQTVMT+VYGVT+VGAR+QI
Sbjct: 884 TYVANMVEKQIEEDIKKDDP------IAKLLEGKVSRKVVKQTVMTTVYGVTYVGARDQI 937
Query: 808 KRRLEEKGHITDDRQLFAAACYAAKVTLTALGEIFEAARSIMGWLGDCAKVIA------- 860
+R+L+++G I + ++A+ Y AK L ++G++F+ A+ I WL CA++IA
Sbjct: 938 ERQLKDRGDIPAE-MCWSASAYLAKNVLASIGDLFKGAKDIQNWLNLCARLIAKAIPQDR 996
Query: 861 ---SENQP---------------------VRWTTPLGLPVVQPYCKNERHLIRTSLQVLA 896
S +P V WTTPLGLP+VQPY +R + TS+Q +
Sbjct: 997 LVQSFTEPEKPNARSRKKEPRWKKEQMTSVVWTTPLGLPIVQPYRAVKRKQVMTSIQTVF 1056
Query: 897 LQ--REGNLVKIRKQRTAFPPNFVHSLDGSHMMMTAVACRDAGLHFAGL 943
+ + V +KQ +AFPPNF+HSLD +HMM+TA+ CR GL FA +
Sbjct: 1057 ISDPTSPSTVNAQKQASAFPPNFIHSLDATHMMLTALECRARGLTFASV 1105
>gi|390596373|gb|EIN05775.1| DNA/RNA polymerase [Punctularia strigosozonata HHB-11173 SS5]
Length = 968
Score = 480 bits (1236), Expect = e-132, Method: Compositional matrix adjust.
Identities = 283/767 (36%), Positives = 432/767 (56%), Gaps = 74/767 (9%)
Query: 227 LSEAIEREQKMQRTKKQKAA-YAPHIELLPADKVAVIVMHKMMGLVMAGHEDRCVQVVQA 285
+ E I++E+ M + +K P + LL K+++I + ++M L +G + ++ +A
Sbjct: 89 IQELIKQEEIMTAKRSRKDERLGPFLSLLKPSKLSLITILELMHLSGSGGVNSGMKTARA 148
Query: 286 AVHIGMAIEQEIRIHSFLEKTKNYKRKKI--------IADTEEVLSKEKELLRKRVNSLI 337
+ +G A+E E K + +R I A E+ K++ +
Sbjct: 149 LLTVGKAVELEY-------KAEMCRRNDIQIPQASSTFASKSEIEKKQRGFFTGLGYREL 201
Query: 338 KSKRVMEAQKLLKNEE-TKPWGRDTQAKLGSRLVELLIETAYVQHPV--NPADYSPPDVR 394
++RV A+ + + EE T W ++ + ++GS LV+ L++ A V+ +
Sbjct: 202 HARRVAAARYVQEAEEWTSEWTQELKVRVGSFLVDTLMDVATVERTAINKVTGQEVTEEH 261
Query: 395 PAFRHRFKTILKHPGQKTTKRYGVVECDPLVLEGLDR-SAKHMLIP-YVPMLVPPKKWKG 452
PAF H ++ + H + G++ +P+V E + + + + L P ++PMLV PK W
Sbjct: 262 PAFYHSYEYMKGH-------KLGIIRLNPVVAERMAKDNLRDTLHPRHLPMLVKPKPWLD 314
Query: 453 YNKGGYLFLPSYVMRTHGSRKQQEALKSVTGNC-MKKVFEALDTLGSTKWRVNKQVLSVL 511
+N+GGY++ + MR SR+Q+ L + ++ V+ LD LGST W +N+ V ++
Sbjct: 315 HNQGGYIYNKTSAMRFKESREQEVYLAHASAQGHVELVYAGLDVLGSTPWVINRDVFDIV 374
Query: 512 ESIWVSGGNIAGLVDRN-DVLIPEKPLSEDMTEVQKWKWSVRKAKKINQER---HSQRCD 567
+W SG A + D PE+P E T+ K + +AK+ Q++ HS+RC+
Sbjct: 375 LQVWNSGERFAKIPPAAFDGPEPERP-GEGETDPHKKTIYITRAKQYAQDKASNHSERCN 433
Query: 568 TELKLSVARRMKDEEGFYYPHNLDFRGRAYPMHPHLNHLSSDVCRGVLEFAEGRPLGKSG 627
K+ +AR + FY PHNLDFRGRAYP+ PHLNH+ D+ RG+L+F E RPLG+ G
Sbjct: 434 VNYKIEIARAFLGDT-FYLPHNLDFRGRAYPIPPHLNHIGDDLARGLLKFGESRPLGERG 492
Query: 628 LRWLKIHLANLFSGGVEKLSHDGRLAFVENHLYEIFDSAENPINGSRWWLTAEDPFQCLA 687
LRWLKIHLANL+ G +K S D R+ +V + +I+DSA P++G RWW A+DP+QCLA
Sbjct: 493 LRWLKIHLANLY--GYDKASFDERVNWVHERMEQIYDSATKPLDGQRWWTHADDPWQCLA 550
Query: 688 ACINLSEALKSSSPHSVISHLPIHQDGSCNGLQHYAALGRNTLEAAAVNLVAGEKPADVY 747
C L AL+S P + S LP+HQDG+CNGLQHYAALG +++ AA VNL ++P+DVY
Sbjct: 551 TCKELHAALESPDPLAFESSLPVHQDGTCNGLQHYAALGGDSIGAAQVNLAVTDRPSDVY 610
Query: 748 SEIAVRVHEIMKRDSNKDPSKHPQALLAKILIDQVDRKLVKQTVMTSVYGVTFVGAREQI 807
+ +A V ++ D K P AK+L ++ RK+VKQTVMT+VYGVTF+GAR+Q+
Sbjct: 611 TYVANMVEREIEDDIKK-----PDNKWAKMLQGKIARKVVKQTVMTTVYGVTFIGARDQL 665
Query: 808 KRRLEEKGHITDDRQLFAAACYAAKVTLTALGEIFEAARSIMGWLGDCAKVIASENQPVR 867
+++L+++G I + + AA Y AK TL +G++F A+ I WL A++I+ P R
Sbjct: 666 EKQLKDRGDIPVE-DCWHAASYLAKKTLDCIGDLFRGAKDIQNWLNLSARLISKSIPPDR 724
Query: 868 -----------------------------WTTPLGLPVVQPYCKNERHLIRTSLQVLALQ 898
WTTPLGLP+VQPY + +R I TSLQ + +
Sbjct: 725 LELAARTASKRRKGIPIKDIRKEQMTSVIWTTPLGLPIVQPYRQTQRRQILTSLQTVFIS 784
Query: 899 --REGNLVKIRKQRTAFPPNFVHSLDGSHMMMTAVACRDAGLHFAGL 943
V KQ +AFPPNFVHSLD +HMM+TA+ CR GL FA +
Sbjct: 785 DPNMAETVNSTKQASAFPPNFVHSLDATHMMLTALECRSQGLTFASV 831
>gi|154290650|ref|XP_001545917.1| hypothetical protein BC1G_15645 [Botryotinia fuckeliana B05.10]
Length = 1234
Score = 480 bits (1236), Expect = e-132, Method: Compositional matrix adjust.
Identities = 291/841 (34%), Positives = 440/841 (52%), Gaps = 88/841 (10%)
Query: 169 EMKKRKFNLLRRRQVKQETEAWERMVDEYKELEAKMIEKRLAPNL--PHIKGLFLGWFGP 226
+M K R Q + E +A + +D +++ + L+ +L + W
Sbjct: 182 DMSKMSEEQQRAIQAQLEEDAVQAAIDRWRDESVNLTRLGLSTSLQSKSLGARMWKWHVA 241
Query: 227 LSEAI--------EREQKMQRTKKQ--KAAYAPHIELLPADKVAVIVMHKMMGLVMAGHE 276
L++ + E E K R+ + + Y P + LPA+K+A + + M + +
Sbjct: 242 LTDTLKEELKAIDEAEMKQHRSTEDISRCEYGPFLRYLPAEKLAALTIIAHMHALSSSGI 301
Query: 277 DRCVQVVQAAVHIGMAIEQEIRIHSFLEKTKNYKRKKIIADTEEVL------SKEKELLR 330
D+ + + + + I ++E E + + +AD L + L
Sbjct: 302 DKGLTLSFSILQIAKSVEDESIFETIQQNMAKPSWSDSVADRVRTLRILKAKAHGNSELT 361
Query: 331 KRVNSLIKSKRVMEAQKLLKNEETKPWGRDTQAKLGSRLVELLIETAYVQ----HPVNPA 386
NS S + ++ +E W +AK+GS L+E L++ A V HP
Sbjct: 362 DNTNSTSFSPDAFVSSQIRAHE----WSVGIKAKVGSFLLESLLKVAKVPVTMVHP--ET 415
Query: 387 DYSPPDVRPAFRHRFKTILKHPGQKTTKRYGVVECDPLVLEGLDRSAKH-MLIPYVPMLV 445
+ + ++PAF H + + ++ GV+ + +++E L R H +L ++PMLV
Sbjct: 416 NETVTQMQPAFSHAQQ-------YRMGRKLGVINANKVIVEQLKREPVHSLLAKHLPMLV 468
Query: 446 PPKKWKGYNKGGYLFLPSYVMRTHGSRKQQE--ALKSVTGNCMKKVFEALDTLGSTKWRV 503
P+ W G++ GG+L P VMR Q A ++ + VF+ L+ LG WR+
Sbjct: 469 KPEPWTGFSSGGFLKHPGRVMRVKNGDADQRNYADAAIDRGNLSTVFKGLNILGEQSWRI 528
Query: 504 NKQVLSVLESIWVSGGNIAGLV-DRNDVLIPEKP-LSEDMTEVQKWKWSVRKAKKINQER 561
N+ V ++ W SG IA L D+ + P +P S D E +W +V+K +
Sbjct: 529 NQPVFDIMLEAWNSGDAIANLAPDKPKLDYPPEPETSSDPLERPRWVTAVKKVENSKSSF 588
Query: 562 HSQRCDTELKLSVARRMKDEEGFYYPHNLDFRGRAYPMHPHLNHLSSDVCRGVLEFAEGR 621
HSQRC +L +AR ++D+ FY+PHN+DFRGRAYP+ P+LNH+ +D CRG++ F G+
Sbjct: 589 HSQRCFQNFQLEIARALRDKT-FYFPHNVDFRGRAYPIPPYLNHMGADHCRGLMMFGTGK 647
Query: 622 PLGKSGLRWLKIHLANLFSGGVEKLSHDGRLAFVENHLYEIFDSAENPINGSRWWLTAED 681
LG SGLRWLK+HLAN++ G +K S R F ++ EI+DSA NP+ G RWWL AED
Sbjct: 648 ALGNSGLRWLKVHLANVY--GFDKASLQEREEFASKNIDEIYDSATNPLGGKRWWLQAED 705
Query: 682 PFQCLAACINLSEALKSSSPHSVISHLPIHQDGSCNGLQHYAALGRNTLEAAAVNLVAGE 741
P+QCLAAC+ AL+S P S +S+LP+HQDG+CNGLQHYAALG + A VNL G+
Sbjct: 706 PWQCLAACMEFKNALESGDPASFVSYLPVHQDGTCNGLQHYAALGGDVWGAQQVNLEPGD 765
Query: 742 KPADVYSEIAVRVHEIMKRDSNKDPSKHPQALLAKILIDQVDRKLVKQTVMTSVYGVTFV 801
+PADVY+ +A V E + +D K AKIL ++ RK+VKQTVMT+VYGVTF+
Sbjct: 766 RPADVYTAVADLVKESIAKDLLAGQPK------AKILNGKITRKVVKQTVMTNVYGVTFI 819
Query: 802 GAREQIKRRL-EEKGHITDDRQLFAA--ACYAAKVTLTALGEIFEAARSIMGWLGDCAKV 858
GA+ Q++++L + D+ ++ A Y TAL +F+ A I WLGDCA
Sbjct: 820 GAKAQVRKQLVAAHKDLPDNDEINPGTLASYVVTKIFTALSTMFKGAHDIQYWLGDCASR 879
Query: 859 IASENQP----------------------------------VRWTTPLGLPVVQPYCKNE 884
I++ P V WTTPL LPVVQPY ++
Sbjct: 880 ISNSLTPEQIERIVAQASEQEGRPSKRAALALDEISQFKSSVIWTTPLNLPVVQPYRTHK 939
Query: 885 RHLIRTSLQVLALQR--EGNLVKIRKQRTAFPPNFVHSLDGSHMMMTAVACRDAGLHFAG 942
L+RT+LQ+L+L + V RKQ AFPPNF+HSLD +HM+++AV C +A L FA
Sbjct: 940 SRLVRTNLQLLSLSEPHRSDPVSSRKQLQAFPPNFIHSLDATHMLLSAVKCNEAKLAFAA 999
Query: 943 L 943
+
Sbjct: 1000 V 1000
>gi|393232267|gb|EJD39851.1| DNA/RNA polymerase [Auricularia delicata TFB-10046 SS5]
Length = 1218
Score = 480 bits (1236), Expect = e-132, Method: Compositional matrix adjust.
Identities = 307/817 (37%), Positives = 451/817 (55%), Gaps = 105/817 (12%)
Query: 199 ELEAKMIEK-RLAPNLPH--IKGLFLGWFGPLSEAIERE----QKMQRTKKQKAA---YA 248
E E ++ E +AP L ++ W L E +E E + +R Q +A
Sbjct: 259 EHETRLFESLNMAPGLSRGPLRRWMWTWHQRLVEQLESEIVKIEVHERRAAQTSARPHIG 318
Query: 249 PHIELLPADKVAVIVMHKMMGLVMAGHE--------DRCVQVVQAAVHIGMAIEQEIRIH 300
P++ LL ADK++++ + ++M L AG D V++ +A + I A+E E
Sbjct: 319 PYLRLLRADKLSMLTIMELMRLHSAGTSGSSGATGADPGVKLARALISIAQAVELE---- 374
Query: 301 SFLEKTKNYKRKKI-IADTEEVLSKEKELLRKRVNSLIKSKRVMEAQKLLKNEETKP-WG 358
+ +R+K+ + V S + + R+ L +E QK L ++ +P W
Sbjct: 375 ---HAAQLCRRRKVQLPANTGVTSFFSQSAQARMLQL-----RLERQKALADDAWQPEWS 426
Query: 359 RDTQAKLGSRLVELLIETAYVQ----HPVNPADYSPPDVRPAFRHRFKTILKHPGQKTTK 414
+ T+ KLG+ LV+ L+ A ++ HPV + + + AF H ++ GQK
Sbjct: 427 QITRVKLGAFLVDQLMAVAKIERTRTHPVTGEKLT--EEQAAFTHTYEY---QRGQK--- 478
Query: 415 RYGVVECDPLVLEGLDRSAKHMLI--PYVPMLVPPKKWKGYNKGGYLFLPSYVMRTHGSR 472
GV++ +PLV E L + L+ ++PM+V PK W ++ GGYLF + VMR S+
Sbjct: 479 -LGVIKLNPLVTECLAEAPVRDLVHPRHLPMVVKPKPWIDHDNGGYLFSRASVMRIKDSQ 537
Query: 473 KQQEALK--SVTGNCMKKVFEALDTLGSTKWRVNKQVLSVLESIWVSGGNIAGLVDRNDV 530
+Q L+ SV GN M+ V+ LD LGST W +N+ V V+ +W SG + G + +
Sbjct: 538 EQLTYLRQASVLGN-MELVYSGLDVLGSTPWHINRGVFDVVLEVWNSGQGL-GSIPPAKL 595
Query: 531 LIPEKPLSEDMTEVQKWKWSVRKAKKINQER---HSQRCDTELKLSVARRMKDEEGFYYP 587
PE ED T++Q ++K K + HS+RC KL +AR E Y+P
Sbjct: 596 EEPEPDKPEDETDMQAKVAYLQKLKIWTTNKGNNHSERCSVNYKLEIARAFLGET-LYFP 654
Query: 588 HNLDFRGRAYPMHPHLNHLSSDVCRGVLEFAEGRPLGKSGLRWLKIHLANLFSGGVEKLS 647
HN+DFRGRAYP+ PHLNH+ D+ R +L+FAE RPLG+ G+RWLKIHL+NL+ G +K S
Sbjct: 655 HNIDFRGRAYPIPPHLNHMGDDLSRALLQFAESRPLGERGVRWLKIHLSNLY--GFDKAS 712
Query: 648 HDGRLAFVENHLYEIFDSAENPINGSRWWLTAEDPFQCLAACINLSEALKSSSPHSVISH 707
D R+AF E HL E+FDSA+NP+ G++WW AED +QCLAAC L+ AL+S P++ S
Sbjct: 713 FDDRVAFTEKHLDEVFDSADNPLTGNKWWQKAEDQWQCLAACKELTAALRSPDPYAYESC 772
Query: 708 LPIHQDGSCNGLQHYAALGRNTLEAAAVNLVAGEKPADVYSEIAVRVHEIMKRDSNKDPS 767
LP+HQDG+CNGLQHYAALG + + A VNL E+PADVYS +A V + +D+ K
Sbjct: 773 LPVHQDGTCNGLQHYAALGGDMIGAQQVNLDVTERPADVYSFVANMVEAEIAKDAEKGNG 832
Query: 768 KHPQALLAKILIDQVDRKLVKQTVMTSVYGVTFVGAREQIKRRLEEKGHITDDRQLFAAA 827
AK+ ++ RK+VKQTVMT+VYGVT++GAR+QI R+L ++ + F A
Sbjct: 833 ------YAKLAQGKISRKIVKQTVMTTVYGVTYIGARDQILRQLRDRKDLFHYDDTFGIA 886
Query: 828 CYAAKVTLTALGEIFEAARSIMGWLGDCAKVIA--------------------------- 860
Y A+ TL +G++F+ A+ IM WL +++IA
Sbjct: 887 GYLARKTLDCIGDLFKGAKDIMSWLTTTSRLIARSIPASRVDEAVADLTDGKAHRNVAGK 946
Query: 861 -----------SENQPVRWTTPLGLPVVQPYCKNERHLIRTSLQVLALQREGNL---VKI 906
+ V WTT LGLP+VQPY K +R I T+LQ + + + N+ V
Sbjct: 947 LNRAKGSRMDTEQMTAVVWTTMLGLPIVQPYRKVKRKQILTNLQTVYIS-DPNIPTEVDA 1005
Query: 907 RKQRTAFPPNFVHSLDGSHMMMTAVACRDAGLHFAGL 943
+KQ TAFPPNF+HSLD +HMM+TA+ CR L FA +
Sbjct: 1006 KKQATAFPPNFIHSLDATHMMLTALECRANNLTFASV 1042
>gi|71013602|ref|XP_758640.1| hypothetical protein UM02493.1 [Ustilago maydis 521]
gi|46098298|gb|EAK83531.1| hypothetical protein UM02493.1 [Ustilago maydis 521]
Length = 1566
Score = 479 bits (1234), Expect = e-132, Method: Compositional matrix adjust.
Identities = 288/753 (38%), Positives = 428/753 (56%), Gaps = 86/753 (11%)
Query: 249 PHIELLPADKVAVIVMHKMMGLVMAGHEDRCVQVVQAAVHIGMAIEQEIRIHSFLEKTKN 308
P + LLPA K+A+I + ++M + G ++ +A + +G AIE E HS + +
Sbjct: 637 PFLRLLPASKLALITILELMRMSGNGDVSDGMKTTRAVLQVGRAIEMEY--HSDIVR--- 691
Query: 309 YKRKKIIADTEEVLSKEKELLRKRVNSLIKSKRVMEAQKLLKNEE-----TKPWGRDTQA 363
K KI + + LRKR + ++R ++A + + +E W + +A
Sbjct: 692 -KNPKIFQNAYTA----QTTLRKRGLIDLAARREIKAWQKQQEDEGVLSSIPSWTQTVRA 746
Query: 364 KLGSRLVELLIETAYVQHPVNPADYSP-PDVRPAFRHRFKTILKHPGQKTTKRYGVVECD 422
++GS LV+ L+ A V D + +PAF ++ + K+ GV++ +
Sbjct: 747 RVGSYLVQHLMNVATVNRKATDRDGVLWEEDQPAFYSTYQYL-------GGKKLGVIKLN 799
Query: 423 PLVLEGLDR-SAKHMLIP-YVPMLVPPKKWKGYNKGGYLFLPSYVMRTHGSRKQQEALKS 480
++ LD+ S + L P ++PMLVPPK W ++ GGY + MR S +Q L+
Sbjct: 800 EVIARRLDKDSIQETLHPRHLPMLVPPKPWTSHDSGGYYSVRQSAMRYKDSAEQGSYLRV 859
Query: 481 VTGNC-MKKVFEALDTLGSTKWRVNKQVLSVLESIWVSGGNIAGLVD-RNDVLIPEKPLS 538
+ N + V ALD LG+T W++NK + V+ +W SG +IA + +V P+KP +
Sbjct: 860 ASDNGDLDTVLAALDVLGNTSWKINKPIFDVMLEVWNSGKDIADMPPVEMEVPEPQKPDN 919
Query: 539 EDMTEVQKWKWSVRKAKKINQER---HSQRCDTELKLSVARRMKDEEGFYYPHNLDFRGR 595
D +++ +++ K+ NQ+R HSQRCD KL +AR E FY+PHN+DFRGR
Sbjct: 920 YDH-DIKARSVYLQRLKQWNQQRASNHSQRCDVNYKLEIARAYLGER-FYFPHNMDFRGR 977
Query: 596 AYPMHPHLNHLSSDVCRGVLEFAEGRPLGKSGLRWLKIHLANLFSGGVEKLSHDGRLAFV 655
AYPM PHLNH+ +D+CRG+L FA+ +PLGK+GLRWL+IH++N+F G +K S R F
Sbjct: 978 AYPMPPHLNHIGNDLCRGLLLFADSKPLGKAGLRWLRIHISNVF--GYDKASFGEREQFA 1035
Query: 656 ENHLYEIFDSAENPINGSRWWLTAEDPFQCLAACINLSEALK-SSSPHSVISHLPIHQDG 714
+H +I DS E P++G+ WWL A+DP+QCLAAC+ L AL+ + P + S LP+HQDG
Sbjct: 1036 IDHEADIRDSVERPLDGNCWWLKADDPWQCLAACMELKAALEHAEGPEAYESCLPVHQDG 1095
Query: 715 SCNGLQHYAALGRNTLEAAAVNLVAGEKPADVYSEIAVRVHEIMKRDSNKDPSKHPQALL 774
+CNGLQHYAALG + A VNL GE+PADVYS +A V +++ ++ K L
Sbjct: 1096 TCNGLQHYAALGGDLAGAKQVNLSRGERPADVYSGVADLVIKVLDEEAAKGER------L 1149
Query: 775 AKILIDQVDRKLVKQTVMTSVYGVTFVGAREQIKRRLEEKGHITDDRQLFAAACYAAKVT 834
A IL +V RK+VKQTVMT+VYGVTF+GA+ Q+ R+L ++G + + LFAAA + AKV
Sbjct: 1150 ASILQGKVTRKVVKQTVMTTVYGVTFIGAKNQVMRQLADRGDVPAE-DLFAAASFLAKVI 1208
Query: 835 LTALGEIFEAARSIMGWLGDCAKVIASE------------NQP----------------- 865
++ +G +F A+ I WL AKVIA QP
Sbjct: 1209 MSCIGNLFSGAQKIQDWLSFSAKVIAKSIPAQRLEEATRPYQPNESTLKRADARGFSRDP 1268
Query: 866 -------------VRWTTPLGLPVVQPYCKNERHLIRTSLQVLALQR--EGNLVKIRKQR 910
V WTT LGLPVVQPY K+++ + T++Q + + + V KQ
Sbjct: 1269 AKADRIVKEQMTSVIWTTALGLPVVQPYRKSKKKQVSTAMQTVFIHDPLSNSEVSPAKQA 1328
Query: 911 TAFPPNFVHSLDGSHMMMTAVACRDAGLHFAGL 943
+AFPPNF+HSLD +HM++TA+ C AGL FA +
Sbjct: 1329 SAFPPNFIHSLDATHMILTALECHAAGLTFASV 1361
>gi|365765907|gb|EHN07411.1| Rpo41p [Saccharomyces cerevisiae x Saccharomyces kudriavzevii VIN7]
Length = 1351
Score = 479 bits (1234), Expect = e-132, Method: Compositional matrix adjust.
Identities = 304/817 (37%), Positives = 435/817 (53%), Gaps = 97/817 (11%)
Query: 177 LLRRRQVKQETEAWERMVDEYKELEAKMIEKRLAPNL--------PHIKGLFLGWFGPLS 228
+L R + E W+ +E K IEK L L P +K LS
Sbjct: 418 VLENRATEAARERWKHDFEEAKARGDISIEKNLNVKLWKWYNEMLPLVKEEINHCRSLLS 477
Query: 229 EAIEREQKMQRTKKQKAAYAPHIELLPADKVAVIVMHKMMGLVMAGHEDRCVQVVQAAVH 288
E + ++ + + + Y P++ L+ K+ VI + +++ L G ++ +A +
Sbjct: 478 EKLSDKKSLNKVDTNRLGYGPYLTLIDPGKMCVITILELLKLNSTGGVIEGMRTARAVIS 537
Query: 289 IGMAIEQEIRIHSFLEKTKNYKRKKIIADTEEVLSKEKELLRKRVNSLIKSKRVMEAQKL 348
+G AIE E R +E+VL E + R VN K+ E +KL
Sbjct: 538 VGKAIEMEFR-------------------SEQVLKSESQAFRD-VN-----KKSPEFKKL 572
Query: 349 LKN----------EETKP-WGRDTQAKLGSRLVELLIETAYVQ----HPVNPADYSPPDV 393
++N E++K W + +A++GS L+ +LI+ A V PV A
Sbjct: 573 VQNAKSVFRSSQIEQSKILWPQSIRARIGSVLISMLIQVAKVSVQGVDPVTKAKVHGE-- 630
Query: 394 RPAFRHRFKTILKHPGQKTTKRYGVVECDPLVLEGLD--RSAKHMLIPYVPMLVPPKKWK 451
PAF H ++ H G K GV++ ++ L+ R + +PMLV PK W
Sbjct: 631 APAFAHGYQY---HNGSK----LGVLKIHKTLIRQLNGERLIASVQPQLLPMLVEPKPWV 683
Query: 452 GYNKGGYLFLPSYVMRTHGSRKQQEALKSVTGNC-MKKVFEALDTLGSTKWRVNKQVLSV 510
+ GGY + S ++RT S +Q LK+ + N + +V++ L+ LG T W VN++V V
Sbjct: 684 NWRSGGYHYTQSTLLRTKDSPEQVAYLKAASDNGDIDRVYDGLNVLGRTPWTVNRKVFDV 743
Query: 511 LESIWVSGGNIAGLVDRND--VLIPEKPLSEDMTEVQKWKWSVRK-AKKINQERHSQRCD 567
+ +W G + D VL P P + D T ++ WK V+ A K + +R S RCD
Sbjct: 744 VSQVWNKGEGFLDIPGAQDEMVLPPAPPKNSDPTILRAWKLQVKTIANKFSSDR-SNRCD 802
Query: 568 TELKLSVARRMKDEEGFYYPHNLDFRGRAYPMHPHLNHLSSDVCRGVLEFAEGRPLGKSG 627
T KL +AR E+ Y+PHNLDFRGRAYP+ PH NHL +D+ RG+L F G+ LG SG
Sbjct: 803 TNYKLEIARAFLGEK-LYFPHNLDFRGRAYPLSPHFNHLGNDMSRGLLIFWHGKKLGPSG 861
Query: 628 LRWLKIHLANLFSGGVEKLSHDGRLAFVENHLYEIFDSAENPINGSRWWLTAEDPFQCLA 687
L+WLKIHL+NLF G +KL R+AF E+HL +I DSAENP+ G RWW TA+ P+Q LA
Sbjct: 862 LKWLKIHLSNLF--GFDKLPLKDRVAFTESHLQDIKDSAENPLTGDRWWTTADKPWQALA 919
Query: 688 ACINLSEALKSSSPHSVISHLPIHQDGSCNGLQHYAALGRNTLEAAAVNLVAGEKPADVY 747
C L+E +K +P ISH P+HQDG+CNGLQHYAALG + A VNLV +KP DVY
Sbjct: 920 TCFELNEVMKMDNPEEFISHQPVHQDGTCNGLQHYAALGGDVEGATQVNLVPSDKPQDVY 979
Query: 748 SEIAVRVHEIMKRDSNKDPSKHPQALLAKILIDQVDRKLVKQTVMTSVYGVTFVGAREQI 807
+ +A V + ++ S K AKIL D++ RK+VKQTVMT+VYGVT+VGA QI
Sbjct: 980 AHVARLVTKKIRNCSRKGDEN------AKILKDKITRKVVKQTVMTNVYGVTYVGATFQI 1033
Query: 808 KRRLEEKGHITDDR-QLFAAACYAAKVTLTALGEIFEAARSIMGWLGDCAKVIASE---- 862
++L I DDR + + Y K +A+ E+F +A I WLG+ AK I+
Sbjct: 1034 AKQLSP---IFDDRKESLDFSKYLTKHVFSAIRELFHSAHLIQDWLGESAKRISKSIRLD 1090
Query: 863 ---------NQP-----VRWTTPLGLPVVQPYCKNERHLIRTSLQVLALQR--EGNLVKI 906
N+P V WTTPLGLP+VQPY + + + T+LQ + + N V
Sbjct: 1091 VDEKSFKNGNKPDFMSSVIWTTPLGLPIVQPYREESKKQVETNLQTVFISDPFAVNPVNA 1150
Query: 907 RKQRTAFPPNFVHSLDGSHMMMTAVACRDAGLHFAGL 943
R+Q+ PPNF+HSLD SHM+++A C GL FA +
Sbjct: 1151 RRQKAGLPPNFIHSLDASHMLLSAAECGKQGLDFASV 1187
>gi|384499375|gb|EIE89866.1| hypothetical protein RO3G_14577 [Rhizopus delemar RA 99-880]
Length = 1239
Score = 479 bits (1233), Expect = e-132, Method: Compositional matrix adjust.
Identities = 301/833 (36%), Positives = 438/833 (52%), Gaps = 103/833 (12%)
Query: 182 QVKQETEAWERMVDEYKELEAKMIEKRLAPNLPHI---KGLFLGWFGPLS----EAIERE 234
Q+ E + +E + + + IE+ N H+ K + W L+ E I+R
Sbjct: 270 QLSLERQGYEMALQRLLHTKEQSIERGDTLNAMHLTPLKRIMWTWHQNLTLLIDEEIKRC 329
Query: 235 QKMQRTKKQKAAYAPHIELLPADKVAVIVMHKMMGLVMAGHEDRCVQVVQAAVHIGMAIE 294
+ ++ AY P +++LP D ++++ + +++ L + ++ +A + +G A+E
Sbjct: 330 EVAAPRDHERRAYGPFLKVLPKDTLSIVTILELLRLHNSSGIGDGMKTARAILDVGKAVE 389
Query: 295 QEIRIHSFLEKTKNYKRKKIIADTEEVLSKEKELLRKRVNSLIKSKRVMEAQKLLKNEET 354
E H+ ++ K+ K ++ I + VLS + L VN K K++ N+E
Sbjct: 390 ME---HNAVQMKKHAKSQQNI---QNVLSSGR-LFNMAVNKAHK--------KIVNNDEN 434
Query: 355 KP-----WGRDTQAKLGSRLVELLIETAYVQHPVNPADYSPPDVR--PAFRHRFKTILKH 407
W T+AK+GS L LL+E A + P + V PAF H ++ +L
Sbjct: 435 SAEWNPVWPTTTRAKVGSVLTSLLLEAAKIPVPSRDPETGKKIVENIPAFFHTYQYVLG- 493
Query: 408 PGQKTTKRYGVVECDPLVLEGLDRSA-KHMLIP-YVPMLVPPKKWKGYNKGGYLFLPSYV 465
KR G+++ + E L R + L P +PMLVPP+ W YN GGYL S
Sbjct: 494 ------KRVGIIKFADQLTEMLSREPIRDTLHPRLLPMLVPPRPWLSYNSGGYLQTKSVC 547
Query: 466 MRTHGSRKQQEAL-KSVTGNCMKKVFEALDTLGSTKWRVNKQVLSVLESIWVSGGNIAGL 524
MR S +Q L K+ + ++ V LD LGST+W+VNK V ++ W G IA +
Sbjct: 548 MRIKDSAEQLIYLHKASERDLLQDVLAGLDVLGSTRWKVNKNVFKIILEAWNKGEAIADI 607
Query: 525 --VDRNDVLIPEKPLSEDMTEVQKWKW--SVRKAKKINQERHSQRCDTELKLSVARRMKD 580
+P KP + K+ W V++ + + HS RCD K+ AR +
Sbjct: 608 PPAVNGPTPLPPKPENYHTDPKAKFNWVNEVKQIQTTEKNNHSLRCDVNYKVETARAFLN 667
Query: 581 EEGFYYPHNLDFRGRAYPMHPHLNHLSSDVCRGVLEFAEGRPLGKSGLRWLKIHLANLFS 640
Y+PHN+DFRGRAYPM P LNHL +D+CRG+L F E +PLG+ G RWLKIHLANL+
Sbjct: 668 LP-MYFPHNMDFRGRAYPMPPTLNHLGNDLCRGLLHFEEAKPLGEKGWRWLKIHLANLY- 725
Query: 641 GGVEKLSHDGRLAFVENHLYEIFDSAENPINGSRWWLTAEDPFQCLAACINLSEALKSSS 700
G +K S R F +++ I D+ +NP+ G +WWL A+ P+QCLAAC ++EA++S
Sbjct: 726 -GYDKHSFTEREQFTLDNIDNIIDAVDNPLTGKQWWLKADSPWQCLAACFEVAEAVRSGK 784
Query: 701 PHSVISHLPIHQDGSCNGLQHYAALGRNTLEAAAVNLVAGEKPADVYSEIAVRVHEIMKR 760
P S LP+HQDG+CNGLQHYAALG + A AVNL AG++PADVY+ +A V++ +
Sbjct: 785 PEEFKSRLPVHQDGTCNGLQHYAALGGDLAGARAVNLAAGDRPADVYTGVADMVNKYI-- 842
Query: 761 DSNKDPSKHPQALLAKILIDQVDRKLVKQTVMTSVYGVTFVGAREQIKRRLEEKGHITDD 820
D + AKIL V RK+VKQTVMT+VYGVTFVGAR QI+ RL+E I D
Sbjct: 843 ----DKAAEEGNEYAKILQGNVSRKVVKQTVMTNVYGVTFVGARAQIENRLKENPDIPRD 898
Query: 821 RQLFAAACYAAKVTLTALGEIFEAARSIMGWLGDCAKVIA-------------------- 860
+ ++A + Y AK ++LGE+F AR I WL D A+ IA
Sbjct: 899 K-VYALSSYLAKAVFSSLGEMFNGARQIQDWLTDSARRIARSVPLETLEESGVVKHNSGS 957
Query: 861 ----------------------------SENQPVRWTTPLGLPVVQPYCKNERHLIRTSL 892
S+ V WTTPLGLP+VQPY ++ + + T L
Sbjct: 958 IEDAKKSKAKAKESKKKKQVFSARNPSSSQMTSVIWTTPLGLPIVQPYRRSGKRQVATLL 1017
Query: 893 QVLALQ--REGNLVKIRKQRTAFPPNFVHSLDGSHMMMTAVACRDAGLHFAGL 943
Q + ++ V KQ TAFPPNF+HSLD +HM+M+AVAC G+ FA +
Sbjct: 1018 QTIYIEDPDASRPVNALKQSTAFPPNFIHSLDATHMLMSAVACHKRGMTFASV 1070
>gi|321262647|ref|XP_003196042.1| RPO41p [Cryptococcus gattii WM276]
gi|54112187|gb|AAV28789.1| RPO41p [Cryptococcus gattii]
gi|317462517|gb|ADV24255.1| RPO41p [Cryptococcus gattii WM276]
Length = 1180
Score = 479 bits (1232), Expect = e-132, Method: Compositional matrix adjust.
Identities = 287/798 (35%), Positives = 445/798 (55%), Gaps = 95/798 (11%)
Query: 223 WFGPLSEAIER-----EQKMQRTKKQKAAYAP----------------HIELLPADKVAV 261
W G L+ +ER + ++ + KA+ AP ++ LLP DK+A+
Sbjct: 240 WLGELTVELERRIASMQAEIDALPESKASVAPPKYSATARMKPQVLLMYLSLLPVDKLAL 299
Query: 262 IVMHKMMGLVMAGHEDRCVQVVQAAVHIGMAIEQEIRIHSF--LEKTKNYKRKKIIADTE 319
I + ++M + +G ++V++ V +G A+E E R + + +Y K I
Sbjct: 300 ITILEIMRMSGSGGIADGMKVLRGMVAVGKAVETEFRAETIKNVAGVDSYHWLKTIDPQT 359
Query: 320 EVLSKE--KELLRKRVNSLIKSKRVM--EAQKLL-------KNEETKPWGRDTQAKLGSR 368
+ S++ + +K ++KR+ EA+++L ++ T W R Q +GS
Sbjct: 360 QKPSRQLIGSVWKKIGEQANQAKRLGKGEAERILPPNHDDMQDIWTPAWSRMIQLGVGSE 419
Query: 369 LVELLIETAYVQHPVNPADYSP--PDVRPAFRHRFKTILKHPGQKTTKRYGVVECDPLVL 426
LV+ L++ V+ + +++PAF H ++ + K+ GV++ +P+V
Sbjct: 420 LVDALLKVTKVERTARDRNTGEIVMELQPAFTHAYEYV-------RGKKLGVIKLNPVVA 472
Query: 427 EGLDRSAKHMLI--PYVPMLVPPKKWKGYNKGGYLFLPSYVMRTHGSRKQQEALKSVTGN 484
L + ++I ++PMLV P+ W +NKGGYL VMR S +QQ+ LK+ +
Sbjct: 473 ARLAKDDIGVVIHPKHLPMLVEPRPWTAHNKGGYLLHSVPVMRYKESLEQQKWLKAASEE 532
Query: 485 C-MKKVFEALDTLGSTKWRVNKQVLSVLESIWVSGGNIAGLV---DRNDVLIPEKPLSED 540
++ VF LD L ST W++N++V V+ W G IA + D+ PEKP S D
Sbjct: 533 GHLEPVFHGLDVLSSTPWQINRRVFDVVLESWNKGEPIADIPPSEDKAHYEFPEKPDSSD 592
Query: 541 MTEVQKWKWSVRKAKKINQER--HSQRCDTELKLSVARR-MKDEEGFYYPHNLDFRGRAY 597
+ ++ + + Q+R H++RC + +AR +KD FY PHN+DFRGRAY
Sbjct: 593 QDPQVRVQYVEKTKAVLAQQRKDHAERCKFNYNIEIARSYLKDT--FYLPHNMDFRGRAY 650
Query: 598 PMHPHLNHLSSDVCRGVLEFAEGRPLGKSGLRWLKIHLANLFSGGVEKLSHDGRLAFVEN 657
P+ PHL+ + D+CRG+L F +PLG++GL+WL+IHLAN++ G +K S R F +
Sbjct: 651 PIPPHLSPVGDDLCRGLLTFGTKKPLGETGLKWLQIHLANVY--GYDKASFAERARFAQE 708
Query: 658 HLYEIFDSAENPINGSRWWLTAEDPFQCLAACINLSEALKSSSPHSVISHLPIHQDGSCN 717
H +IFDSA++P++G RWWL AEDP+QCLA C L+ AL+S +P + S LP+HQDG+CN
Sbjct: 709 HEADIFDSADHPLDGKRWWLKAEDPWQCLATCFELAAALRSPNPSAYESSLPVHQDGTCN 768
Query: 718 GLQHYAALGRNTLEAAAVNLVAGEKPADVYSEIAVRVHEIMKRDSNKDPSKHPQALLAKI 777
G+QHYAALG + A AVNL AG++PAD+Y+ + V+++++ D + H ALL K
Sbjct: 769 GMQHYAALGGDVRGAKAVNLEAGDRPADIYTGVVDIVNKVVEEDKK---AGHDIALLIK- 824
Query: 778 LIDQVDRKLVKQTVMTSVYGVTFVGAREQIKRRLEEKGHITDDRQLFAAACYAAKVTLTA 837
+ + RK+VKQTVMT+VYGVTFVGAR+QI ++L +G I + +F + Y AK L
Sbjct: 825 --EPLGRKVVKQTVMTTVYGVTFVGARDQIAKQLHARGDIAQE-HIFVVSSYIAKTVLNC 881
Query: 838 LGEIFEAARSIMGWLGDCAKVIASENQPVR------------------------------ 867
+G++F A++IM WL A++I+ P R
Sbjct: 882 IGDLFSGAKAIMDWLTTSARLISRSIPPTRIQEAATNLTSTSRTGKVTSRAAKEFMSAVI 941
Query: 868 WTTPLGLPVVQPYCKNERHLIRTSLQVLALQREG--NLVKIRKQRTAFPPNFVHSLDGSH 925
WTTPLGLPVVQPY K + I T+LQ + + + V +KQ TAFPPNF+HSLD +H
Sbjct: 942 WTTPLGLPVVQPYRKAHKKQIMTALQSVYISDPNAPSEVSPQKQATAFPPNFIHSLDATH 1001
Query: 926 MMMTAVACRDAGLHFAGL 943
M++TA+ C+ L FA +
Sbjct: 1002 MLLTALKCKQNNLAFASV 1019
>gi|50292665|ref|XP_448765.1| hypothetical protein [Candida glabrata CBS 138]
gi|49528077|emb|CAG61728.1| unnamed protein product [Candida glabrata]
Length = 1326
Score = 479 bits (1232), Expect = e-132, Method: Compositional matrix adjust.
Identities = 300/809 (37%), Positives = 433/809 (53%), Gaps = 85/809 (10%)
Query: 177 LLRRRQVKQETEAWERMVDEYKELEAKMIEKRLAPNLPHIKGLFLGWFGPLSEAIEREQK 236
+L RR + E W+ +E K IEK L L W+ + +++E K
Sbjct: 398 MLERRATEAAKERWKFEFEEAKARGDISIEKSLNSRLWE-------WYSAMLPLVKKEAK 450
Query: 237 -----------MQRTKKQKAAYAPHIELLPADKVAVIVMHKMMGLVMAGHEDRCVQVVQA 285
R ++ YAP+ L+ +K+ VI + +++ L G ++ +A
Sbjct: 451 KCIEELNNSKSSSRKLSSRSEYAPYFTLVNPEKMCVITILELLKLNSTGGVIDGMRTARA 510
Query: 286 AVHIGMAIEQEIRIHSFLEKTKNYKRKKIIADTEEVLSKEKELLRKRVNSLIKSKRVMEA 345
+ + AIE E R L ++N K I +K+ ++ V S ++ R ME
Sbjct: 511 VISVSKAIELEFRSEQLL-NSENQTFKDI--------NKKSHEFKRYVQSAKRTFRSMEI 561
Query: 346 QKLLKNEETKPWGRDTQAKLGSRLVELLIETAYVQ----HPVNPADYSPPDVRPAFRHRF 401
+K W + +AK+GS L+ LI A V PV PAF H
Sbjct: 562 EK-----SRIIWPQTVRAKIGSTLISFLIHVAKVSVEGTDPVTKEKVYGD--APAFAH-- 612
Query: 402 KTILKHPGQKTTKRYGVVECDPLVLEGLD--RSAKHMLIPYVPMLVPPKKWKGYNKGGYL 459
T + H G K G+++ ++ L+ R + +PMLV P+ WKG+ GGYL
Sbjct: 613 -TYVYHNGSK----LGIIKIHKALINRLNGERLLASVQPQLLPMLVKPRPWKGWKSGGYL 667
Query: 460 FLPSYVMRTHGSRKQQEALKSVTGN-CMKKVFEALDTLGSTKWRVNKQVLSVLESIWVSG 518
+ S ++R+ S +Q L++V+ + + K+++ L+ LG T W VN++V V+ +W G
Sbjct: 668 YTQSILVRSRDSPEQLAYLQAVSDSGAIDKIYDGLNVLGETAWTVNRKVFDVVSKVWNEG 727
Query: 519 GN---IAGLVDRNDVLIPEKPLSEDMTEVQKWKWSVRKAKKINQERHSQRCDTELKLSVA 575
N I G+ D L+P P S D T +++WK ++ S RCD KL +A
Sbjct: 728 TNFLEIPGIQDELK-LLPPPPRSSDPTVIREWKLKNKELANKYSSDKSVRCDLNYKLEIA 786
Query: 576 RRMKDEEGFYYPHNLDFRGRAYPMHPHLNHLSSDVCRGVLEFAEGRPLGKSGLRWLKIHL 635
R E+ FY+PHNLDFRGRAYP+ PH NHL +D+ R +L F +G+ LG GL WLK+HL
Sbjct: 787 RAFLGEK-FYFPHNLDFRGRAYPLSPHFNHLGNDLSRSLLIFWKGKRLGPDGLNWLKVHL 845
Query: 636 ANLFSGGVEKLSHDGRLAFVENHLYEIFDSAENPINGSRWWLTAEDPFQCLAACINLSEA 695
+NLF GV+K+ + R+ F E H+ +I DSAENP+NG WW TA+ P+Q LA C+ L+EA
Sbjct: 846 SNLF--GVDKVPLEDRVKFTECHIEDIKDSAENPLNGKGWWKTADKPWQALATCMELNEA 903
Query: 696 LKSSSPHSVISHLPIHQDGSCNGLQHYAALGRNTLEAAAVNLVAGEKPADVYSEIAVRVH 755
LK +P ISH P+HQDG+CNGLQHY+ALG + A VNLV EKP DVYS +A V
Sbjct: 904 LKLDNPEDYISHQPVHQDGTCNGLQHYSALGGDVEGATQVNLVPSEKPQDVYSFVAKLVE 963
Query: 756 EIMKRDSNKDPSKHPQALLAKILIDQVDRKLVKQTVMTSVYGVTFVGAREQIKRRLEEKG 815
+++ + K K A IL +V RK+VKQTVMT+VYGVT+VGA QI ++L
Sbjct: 964 ARLEKAAAKGDEK------ALILKGKVSRKVVKQTVMTNVYGVTYVGATFQIAKQLTA-- 1015
Query: 816 HITDDRQL-FAAACYAAKVTLTALGEIFEAARSIMGWLGDCAKVIASE------------ 862
I DDR + Y AK A+ E+FE A I WLG+CAK I+
Sbjct: 1016 -IFDDRAYSLELSKYLAKHVFAAVRELFEGAHLIQDWLGECAKRISKSIRLDVDEKSFKN 1074
Query: 863 -NQP-----VRWTTPLGLPVVQPYCKNERHLIRTSLQVLALQREG--NLVKIRKQRTAFP 914
++P + WTTPLGLP+VQPY + + T+LQ + + N + R+Q+ FP
Sbjct: 1075 GDKPDYMSSIIWTTPLGLPIVQPYRDAGKKQVITNLQSVFISDPFAINPINSRRQKAGFP 1134
Query: 915 PNFVHSLDGSHMMMTAVACRDAGLHFAGL 943
PNF+HSLD SHM+++A CRD GL FA +
Sbjct: 1135 PNFIHSLDASHMLLSAAGCRDNGLDFASV 1163
>gi|428185822|gb|EKX54674.1| RNA polymerase, single subunit, mitochondrial [Guillardia theta
CCMP2712]
Length = 1194
Score = 479 bits (1232), Expect = e-132, Method: Compositional matrix adjust.
Identities = 279/735 (37%), Positives = 436/735 (59%), Gaps = 62/735 (8%)
Query: 227 LSEAIEREQKMQRTKKQKAAY-APHIELLPADKVAVIVMHKMMGLVMAGHEDRCVQVVQA 285
+ ++I + Q + + + P + LPA K+AVI +H+++ +++G V V+A
Sbjct: 435 MEQSISKIQTLHESDDEGIGLIGPILMSLPASKIAVITIHELLSSLLSGGGQ--VHFVRA 492
Query: 286 AVHIGMAIEQEIRIHSFLEKTKNYKRKKIIADTEEVLSKEKELLRKRVNSLIKSKRVMEA 345
A +G I+ E+ LE K K + +++ +R+++L K+ V +
Sbjct: 493 ARTVGEGIQAELG----LEHVKKAKNRFLLSS-------------RRLSALCKAHDVRKL 535
Query: 346 QKLLKNEETKP-WGRDTQAKLGSRLVELLIETAYVQHPVNPADYSPPDVRPAFRHRFKTI 404
KLL E++P W Q K+G++L+++L+ +A + A H +
Sbjct: 536 NKLLSRLESQPLWDARMQVKVGAKLIQILMNSAKYKGSA------------AVTHVVQAQ 583
Query: 405 LKHPGQKTTKRYGVVECDPLVLEGL----DRSAKHMLIPYVPMLVPPKKWKGYNKGGYLF 460
+ + G + + G + D +L+ L D A H + +PM++ P W ++ G Y+
Sbjct: 584 MSNKGMR---KKGFLALDQEILQDLEKQHDSVAAHNPL-LLPMIIRPFPWMSFDVGCYIQ 639
Query: 461 LPSYVMRTHGSRKQQEALKSVTGNCMKKVFEALDTLGSTKWRVNKQVLSVLESIWVSGGN 520
+ VMR Q+E+ ++ + + +++ ALD L T W +N+++L+V++ W+
Sbjct: 640 ARTKVMRIVDKGLQEESCRN---HDLSRIYAALDVLSGTGWCINRRLLNVVQHAWLDDMI 696
Query: 521 IAGLVDRNDVLIPEKPLSEDMTEVQKWKWSVRKAKKI---NQERHSQRCDTELKLSVARR 577
+ + ++D +PE L D + + R+ K++ N++ HS RC +L VA
Sbjct: 697 LGEIPQKDDFAVPE--LDPDCIDAAESYSQYREKKRVEQRNKDLHSLRCSLINQLHVATT 754
Query: 578 MKDEEGFYYPHNLDFRGRAYPMHPHLNHLSSDVCRGVLEFAEGRPLGKSGLRWLKIHLAN 637
M D + F++PHNLDFRGRAYP+ PHLNHL SD+CRG+L+F++ +PLGK G WLK+HLAN
Sbjct: 755 MSDFKEFFFPHNLDFRGRAYPIPPHLNHLGSDICRGLLKFSKKKPLGKKGFYWLKVHLAN 814
Query: 638 LFSGGVEKLSHDGRLAFVENHLYEIFDSAENPINGS--RWWLTAEDPFQCLAACINLSEA 695
LF G K+S+D R+ + E + +I SA+NP++ + ++WL+A+DP+Q LA + + EA
Sbjct: 815 LF--GENKISYDDRVKWTEERMSQILHSAKNPLDSASRKFWLSADDPWQALATSMEIQEA 872
Query: 696 LKSSSPHSVISHLPIHQDGSCNGLQHYAALGRNTLEAAAVNLVAGEKPADVYSEIAVRVH 755
++S P + +S+LP+HQDGSCNGLQHYAALG + + VNLV GEKP+D Y+ + RV
Sbjct: 873 IESGDPSTYLSNLPVHQDGSCNGLQHYAALGLDEIGGEQVNLVPGEKPSDPYTTVCNRVL 932
Query: 756 EIMKRDSNKDPSKHPQALLAKILIDQVDRKLVKQTVMTSVYGVTFVGAREQIKRRLEEKG 815
E + D +DPS ++K++ +V RK+VKQTVMT+VYGVTF+GAREQI RL E
Sbjct: 933 EALDMDL-RDPSSADHE-VSKLVDKRVSRKVVKQTVMTTVYGVTFIGAREQIYNRLYEAY 990
Query: 816 HI--TDDRQ---LFAAACYAAKVTLTALGEIFEAARSIMGWLGDCAKVIASENQPVRWTT 870
I T++ Q L+ A+ Y AK+TL ++G IF AR M WL AK++AS QPVRWTT
Sbjct: 991 GIPGTNELQENDLYRASMYLAKLTLASVGNIFVGARKTMEWLTSVAKIVASTGQPVRWTT 1050
Query: 871 PLGLPVVQPYCKNERHLIRTSLQVLALQR--EGNLVKIRKQRTAFPPNFVHSLDGSHMMM 928
PLGLPVVQPY K + T++Q ++L + E + KQRTAFPPNFVHSLD +H++M
Sbjct: 1051 PLGLPVVQPYYKETMMSVETAVQNISLLKCDENGPINKLKQRTAFPPNFVHSLDSTHLLM 1110
Query: 929 TAVACRDAGLHFAGL 943
TA+ G FAG+
Sbjct: 1111 TAIEFDRRGKTFAGV 1125
>gi|259146153|emb|CAY79412.1| Rpo41p [Saccharomyces cerevisiae EC1118]
Length = 1351
Score = 478 bits (1231), Expect = e-132, Method: Compositional matrix adjust.
Identities = 303/817 (37%), Positives = 435/817 (53%), Gaps = 97/817 (11%)
Query: 177 LLRRRQVKQETEAWERMVDEYKELEAKMIEKRLAPNL--------PHIKGLFLGWFGPLS 228
+L R + E W+ +E K IEK L L P +K LS
Sbjct: 418 VLENRATEAARERWKHDFEEAKARGDISIEKNLNVKLWKWYNEMLPLVKEEINHCRSLLS 477
Query: 229 EAIEREQKMQRTKKQKAAYAPHIELLPADKVAVIVMHKMMGLVMAGHEDRCVQVVQAAVH 288
E + ++ + + + Y P++ L+ K+ VI + +++ L G ++ +A +
Sbjct: 478 EKLSDKKSLNKVDTNRLGYGPYLTLIDPGKMCVITILELLKLNSTGGVIEGMRTARAVIS 537
Query: 289 IGMAIEQEIRIHSFLEKTKNYKRKKIIADTEEVLSKEKELLRKRVNSLIKSKRVMEAQKL 348
+G AIE E R +E+VL E + R VN K+ E +KL
Sbjct: 538 VGKAIEMEFR-------------------SEQVLKSESQAFRD-VN-----KKSPEFKKL 572
Query: 349 LKN----------EETKP-WGRDTQAKLGSRLVELLIETAYVQ----HPVNPADYSPPDV 393
++N E++K W + +A++GS L+ +LI+ A V PV A
Sbjct: 573 VQNAKSVFRSSQIEQSKILWPQSIRARIGSVLISMLIQVAKVSVQGVDPVTKAKVHGE-- 630
Query: 394 RPAFRHRFKTILKHPGQKTTKRYGVVECDPLVLEGLD--RSAKHMLIPYVPMLVPPKKWK 451
PAF H ++ H G K GV++ ++ L+ R + +PMLV PK W
Sbjct: 631 APAFAHGYQY---HNGSK----LGVLKIHKTLIRQLNGERLIASVQPQLLPMLVEPKPWV 683
Query: 452 GYNKGGYLFLPSYVMRTHGSRKQQEALKSVTGNC-MKKVFEALDTLGSTKWRVNKQVLSV 510
+ GGY + S ++RT S +Q LK+ + N + +V++ L+ LG T W VN++V V
Sbjct: 684 NWRSGGYHYTQSTLLRTKDSPEQVAYLKAASDNGDIDRVYDGLNVLGRTPWTVNRKVFDV 743
Query: 511 LESIWVSGGNIAGLVDRND--VLIPEKPLSEDMTEVQKWKWSVRK-AKKINQERHSQRCD 567
+ +W G + D VL P P + D T ++ WK V+ A K + +R S RCD
Sbjct: 744 VSQVWNKGEGFLDIPGAQDEMVLPPAPPKNSDPTILRAWKLQVKTIANKFSSDR-SNRCD 802
Query: 568 TELKLSVARRMKDEEGFYYPHNLDFRGRAYPMHPHLNHLSSDVCRGVLEFAEGRPLGKSG 627
T KL +AR E+ Y+PHNLDFRGRAYP+ PH NHL +D+ RG+L F G+ LG SG
Sbjct: 803 TNYKLEIARAFLGEK-LYFPHNLDFRGRAYPLSPHFNHLGNDMSRGLLIFWHGKKLGPSG 861
Query: 628 LRWLKIHLANLFSGGVEKLSHDGRLAFVENHLYEIFDSAENPINGSRWWLTAEDPFQCLA 687
L+WLKIHL+NLF G +KL R+AF E+HL +I DSAENP+ G RWW TA+ P+Q LA
Sbjct: 862 LKWLKIHLSNLF--GFDKLPLKDRVAFTESHLQDIKDSAENPLTGDRWWTTADKPWQALA 919
Query: 688 ACINLSEALKSSSPHSVISHLPIHQDGSCNGLQHYAALGRNTLEAAAVNLVAGEKPADVY 747
C L+E +K +P ISH P+HQDG+CNGLQHYAALG + A VNLV +KP DVY
Sbjct: 920 TCFELNEVMKMDNPEEFISHQPVHQDGTCNGLQHYAALGGDVEGATQVNLVPSDKPQDVY 979
Query: 748 SEIAVRVHEIMKRDSNKDPSKHPQALLAKILIDQVDRKLVKQTVMTSVYGVTFVGAREQI 807
+ +A V + ++ + K AKIL D++ RK+VKQTVMT+VYGVT+VGA QI
Sbjct: 980 AHVARLVQKRLEIAAEKGDEN------AKILKDKITRKVVKQTVMTNVYGVTYVGATFQI 1033
Query: 808 KRRLEEKGHITDDR-QLFAAACYAAKVTLTALGEIFEAARSIMGWLGDCAKVIASE---- 862
++L I DDR + + Y K +A+ E+F +A I WLG+ AK I+
Sbjct: 1034 AKQLSP---IFDDRKESLDFSKYLTKHVFSAIRELFHSAHLIQDWLGESAKRISKSIRLD 1090
Query: 863 ---------NQP-----VRWTTPLGLPVVQPYCKNERHLIRTSLQVLALQR--EGNLVKI 906
N+P V WTTPLGLP+VQPY + + + T+LQ + + N V
Sbjct: 1091 VDEKSFKNGNKPDFMSSVIWTTPLGLPIVQPYREESKKQVETNLQTVFISDPFAVNPVNA 1150
Query: 907 RKQRTAFPPNFVHSLDGSHMMMTAVACRDAGLHFAGL 943
R+Q+ PPNF+HSLD SHM+++A C GL FA +
Sbjct: 1151 RRQKAGLPPNFIHSLDASHMLLSAAECGKQGLDFASV 1187
>gi|190406539|gb|EDV09806.1| mitochondrial RNA polymerase [Saccharomyces cerevisiae RM11-1a]
Length = 1351
Score = 478 bits (1231), Expect = e-132, Method: Compositional matrix adjust.
Identities = 303/817 (37%), Positives = 435/817 (53%), Gaps = 97/817 (11%)
Query: 177 LLRRRQVKQETEAWERMVDEYKELEAKMIEKRLAPNL--------PHIKGLFLGWFGPLS 228
+L R + E W+ +E K IEK L L P +K LS
Sbjct: 418 VLENRATEAARERWKHDFEEAKARGDISIEKNLNVKLWKWYNEMLPLVKEEINHCRSLLS 477
Query: 229 EAIEREQKMQRTKKQKAAYAPHIELLPADKVAVIVMHKMMGLVMAGHEDRCVQVVQAAVH 288
E + ++ + + + Y P++ L+ K+ VI + +++ L G ++ +A +
Sbjct: 478 EKLSDKKSLNKVDTNRLGYGPYLTLIDPGKMCVITILELLKLNSTGGVIEGMRTARAVIS 537
Query: 289 IGMAIEQEIRIHSFLEKTKNYKRKKIIADTEEVLSKEKELLRKRVNSLIKSKRVMEAQKL 348
+G AIE E R +E+VL E + R VN K+ E +KL
Sbjct: 538 VGKAIEMEFR-------------------SEQVLKSESQAFRD-VN-----KKSPEFKKL 572
Query: 349 LKN----------EETKP-WGRDTQAKLGSRLVELLIETAYVQ----HPVNPADYSPPDV 393
++N E++K W + +A++GS L+ +LI+ A V PV A
Sbjct: 573 VQNAKSVFRSSQIEQSKILWPQSIRARIGSVLISMLIQVAKVSVQGVDPVTKAKVHGE-- 630
Query: 394 RPAFRHRFKTILKHPGQKTTKRYGVVECDPLVLEGLD--RSAKHMLIPYVPMLVPPKKWK 451
PAF H ++ H G K GV++ ++ L+ R + +PMLV PK W
Sbjct: 631 APAFAHGYQY---HNGSK----LGVLKIHKTLIRQLNGERLIASVQPQLLPMLVEPKPWV 683
Query: 452 GYNKGGYLFLPSYVMRTHGSRKQQEALKSVTGNC-MKKVFEALDTLGSTKWRVNKQVLSV 510
+ GGY + S ++RT S +Q LK+ + N + +V++ L+ LG T W VN++V V
Sbjct: 684 NWRSGGYHYTQSTLLRTKDSPEQVAYLKAASDNGDIDRVYDGLNVLGRTPWTVNRKVFDV 743
Query: 511 LESIWVSGGNIAGLVDRND--VLIPEKPLSEDMTEVQKWKWSVRK-AKKINQERHSQRCD 567
+ +W G + D VL P P + D T ++ WK V+ A K + +R S RCD
Sbjct: 744 VSQVWNKGEGFLDIPGAQDEMVLPPAPPKNSDPTILRAWKLQVKTIANKFSSDR-SNRCD 802
Query: 568 TELKLSVARRMKDEEGFYYPHNLDFRGRAYPMHPHLNHLSSDVCRGVLEFAEGRPLGKSG 627
T KL +AR E+ Y+PHNLDFRGRAYP+ PH NHL +D+ RG+L F G+ LG SG
Sbjct: 803 TNYKLEIARAFLGEK-LYFPHNLDFRGRAYPLSPHFNHLGNDMSRGLLIFWHGKKLGPSG 861
Query: 628 LRWLKIHLANLFSGGVEKLSHDGRLAFVENHLYEIFDSAENPINGSRWWLTAEDPFQCLA 687
L+WLKIHL+NLF G +KL R+AF E+HL +I DSAENP+ G RWW TA+ P+Q LA
Sbjct: 862 LKWLKIHLSNLF--GFDKLPLKDRVAFTESHLQDIKDSAENPLTGDRWWTTADKPWQALA 919
Query: 688 ACINLSEALKSSSPHSVISHLPIHQDGSCNGLQHYAALGRNTLEAAAVNLVAGEKPADVY 747
C L+E +K +P ISH P+HQDG+CNGLQHYAALG + A VNLV +KP DVY
Sbjct: 920 TCFELNEVMKMDNPEEFISHQPVHQDGTCNGLQHYAALGGDVEGATQVNLVPSDKPQDVY 979
Query: 748 SEIAVRVHEIMKRDSNKDPSKHPQALLAKILIDQVDRKLVKQTVMTSVYGVTFVGAREQI 807
+ +A V + ++ + K AKIL D++ RK+VKQTVMT+VYGVT+VGA QI
Sbjct: 980 AHVARLVQKRLEIAAEKGDEN------AKILKDKITRKVVKQTVMTNVYGVTYVGATFQI 1033
Query: 808 KRRLEEKGHITDDR-QLFAAACYAAKVTLTALGEIFEAARSIMGWLGDCAKVIASE---- 862
++L I DDR + + Y K +A+ E+F +A I WLG+ AK I+
Sbjct: 1034 AKQLSP---IFDDRKESLDFSKYLTKHVFSAIRELFHSAHLIQDWLGESAKRISKSIRLD 1090
Query: 863 ---------NQP-----VRWTTPLGLPVVQPYCKNERHLIRTSLQVLALQR--EGNLVKI 906
N+P V WTTPLGLP+VQPY + + + T+LQ + + N V
Sbjct: 1091 VDEKSFKNGNKPDFMSSVIWTTPLGLPIVQPYREESKKQVETNLQTVFISDPFAVNPVNA 1150
Query: 907 RKQRTAFPPNFVHSLDGSHMMMTAVACRDAGLHFAGL 943
R+Q+ PPNF+HSLD SHM+++A C GL FA +
Sbjct: 1151 RRQKAGLPPNFIHSLDASHMLLSAAECGKQGLDFASV 1187
>gi|256268895|gb|EEU04244.1| Rpo41p [Saccharomyces cerevisiae JAY291]
Length = 1351
Score = 478 bits (1231), Expect = e-132, Method: Compositional matrix adjust.
Identities = 303/817 (37%), Positives = 435/817 (53%), Gaps = 97/817 (11%)
Query: 177 LLRRRQVKQETEAWERMVDEYKELEAKMIEKRLAPNL--------PHIKGLFLGWFGPLS 228
+L R + E W+ +E K IEK L L P +K LS
Sbjct: 418 VLENRATEAARERWKHDFEEAKARGDISIEKNLNVKLWKWYNEMLPLVKEEINHCRSLLS 477
Query: 229 EAIEREQKMQRTKKQKAAYAPHIELLPADKVAVIVMHKMMGLVMAGHEDRCVQVVQAAVH 288
E + ++ + + + Y P++ L+ K+ VI + +++ L G ++ +A +
Sbjct: 478 EKLSDKKSLNKVDTNRLGYGPYLTLIDPGKMCVITILELLKLNSTGGVIEGMRTARAVIS 537
Query: 289 IGMAIEQEIRIHSFLEKTKNYKRKKIIADTEEVLSKEKELLRKRVNSLIKSKRVMEAQKL 348
+G AIE E R +E+VL E + R VN K+ E +KL
Sbjct: 538 VGKAIEMEFR-------------------SEQVLKSESQAFRD-VN-----KKSPEFKKL 572
Query: 349 LKN----------EETKP-WGRDTQAKLGSRLVELLIETAYVQ----HPVNPADYSPPDV 393
++N E++K W + +A++GS L+ +LI+ A V PV A
Sbjct: 573 VQNAKSVFRSSQIEQSKILWPQSIRARIGSVLISMLIQVAKVSVQGVDPVTKAKVHGE-- 630
Query: 394 RPAFRHRFKTILKHPGQKTTKRYGVVECDPLVLEGLD--RSAKHMLIPYVPMLVPPKKWK 451
PAF H ++ H G K GV++ ++ L+ R + +PMLV PK W
Sbjct: 631 APAFAHGYQY---HNGSK----LGVLKIHKTLIRQLNGERLIASVQPQLLPMLVEPKPWV 683
Query: 452 GYNKGGYLFLPSYVMRTHGSRKQQEALKSVTGNC-MKKVFEALDTLGSTKWRVNKQVLSV 510
+ GGY + S ++RT S +Q LK+ + N + +V++ L+ LG T W VN++V V
Sbjct: 684 NWRSGGYHYTQSTLLRTKDSPEQVAYLKAASDNGDIDRVYDGLNVLGRTPWTVNRKVFDV 743
Query: 511 LESIWVSGGNIAGLVDRND--VLIPEKPLSEDMTEVQKWKWSVRK-AKKINQERHSQRCD 567
+ +W G + D VL P P + D T ++ WK V+ A K + +R S RCD
Sbjct: 744 VSQVWNKGEGFLDIPGAQDEMVLPPAPPKNSDPTILRAWKLQVKTIANKFSSDR-SNRCD 802
Query: 568 TELKLSVARRMKDEEGFYYPHNLDFRGRAYPMHPHLNHLSSDVCRGVLEFAEGRPLGKSG 627
T KL +AR E+ Y+PHNLDFRGRAYP+ PH NHL +D+ RG+L F G+ LG SG
Sbjct: 803 TNYKLEIARAFLGEK-LYFPHNLDFRGRAYPLSPHFNHLGNDMSRGLLIFWHGKKLGPSG 861
Query: 628 LRWLKIHLANLFSGGVEKLSHDGRLAFVENHLYEIFDSAENPINGSRWWLTAEDPFQCLA 687
L+WLKIHL+NLF G +KL R+AF E+HL +I DSAENP+ G RWW TA+ P+Q LA
Sbjct: 862 LKWLKIHLSNLF--GFDKLPLKDRVAFTESHLQDIKDSAENPLTGDRWWTTADKPWQALA 919
Query: 688 ACINLSEALKSSSPHSVISHLPIHQDGSCNGLQHYAALGRNTLEAAAVNLVAGEKPADVY 747
C L+E +K +P ISH P+HQDG+CNGLQHYAALG + A VNLV +KP DVY
Sbjct: 920 TCFELNEVMKMDNPEEFISHQPVHQDGTCNGLQHYAALGGDVEGATQVNLVPSDKPQDVY 979
Query: 748 SEIAVRVHEIMKRDSNKDPSKHPQALLAKILIDQVDRKLVKQTVMTSVYGVTFVGAREQI 807
+ +A V + ++ + K AKIL D++ RK+VKQTVMT+VYGVT+VGA QI
Sbjct: 980 AHVARLVQKRLEIAAEKGDEN------AKILKDKITRKVVKQTVMTNVYGVTYVGATFQI 1033
Query: 808 KRRLEEKGHITDDR-QLFAAACYAAKVTLTALGEIFEAARSIMGWLGDCAKVIASE---- 862
++L I DDR + + Y K +A+ E+F +A I WLG+ AK I+
Sbjct: 1034 AKQLSP---IFDDRKESLDFSKYLTKHVFSAIRELFHSAHLIQDWLGESAKRISKSIRLD 1090
Query: 863 ---------NQP-----VRWTTPLGLPVVQPYCKNERHLIRTSLQVLALQR--EGNLVKI 906
N+P V WTTPLGLP+VQPY + + + T+LQ + + N V
Sbjct: 1091 VDEKSFKNGNKPDFMSSVIWTTPLGLPIVQPYREESKKQVETNLQTVFISDPFAVNPVNA 1150
Query: 907 RKQRTAFPPNFVHSLDGSHMMMTAVACRDAGLHFAGL 943
R+Q+ PPNF+HSLD SHM+++A C GL FA +
Sbjct: 1151 RRQKAGLPPNFIHSLDASHMLLSAAECGKQGLDFASV 1187
>gi|342319535|gb|EGU11483.1| DNA-directed RNA polymerase [Rhodotorula glutinis ATCC 204091]
Length = 1343
Score = 478 bits (1229), Expect = e-132, Method: Compositional matrix adjust.
Identities = 276/743 (37%), Positives = 424/743 (57%), Gaps = 80/743 (10%)
Query: 249 PHIELLPADKVAVIVMHKMMGLVMAG-HEDRCVQVVQAAVHIGMAIEQEIRIHSFLEKTK 307
P ++LLP DK+A+I + ++M + +G ++ + +++G A+E E + +
Sbjct: 435 PFLQLLPVDKLALITIVEVMRMCGSGTFAADGMKTTRVVLNVGRAVENEHHAEALRDSLS 494
Query: 308 NYKRKKIIADTEE--VLSKEKELLRKRVNSLIKSKRVMEAQKLLKNEETKP------WGR 359
K ++ +A E ++ + + +R +S ++ ++L K EE W +
Sbjct: 495 TKKLQEELAKVESRGTINPDGTVTPRRQT---ESLGILWRRELAKREEDGDSTWHPNWTQ 551
Query: 360 DTQAKLGSRLVELLIETAYVQ----HPVNPADYSPPDVRPAFRHRFKTILKHPGQKTTKR 415
+A++GS LV L+E A V+ HP S + +PAF H ++ + + TK
Sbjct: 552 TIRARVGSVLVSALMEIAEVERTIKHPKTGEQVS--EKQPAFSHAYQYM------RGTK- 602
Query: 416 YGVVECDPLVLEGLDRSAKHMLI--PYVPMLVPPKKWKGYNKGGYLFLPSYVMRTHGSRK 473
G+++ +P V E LD+ + + ++PMLV PK W +N G YL + +MRT S +
Sbjct: 603 LGIIKLNPAVSERLDKDPLDITLHPRFLPMLVKPKPWLTWNSGAYLLHQTPMMRTKESEE 662
Query: 474 QQEALKSVTGN-CMKKVFEALDTLGSTKWRVNKQVLSVLESIWVSGGNIAGL------VD 526
Q + L+ + N + +F LDTLG+ W++N++V + +W SG A + ++
Sbjct: 663 QVQYLQQASDNHTLDIIFSGLDTLGAVPWKINRKVFDTVVQVWNSGDAFADIPAAAQKLE 722
Query: 527 RNDVLIPEKPLSEDMTEVQKWKWSVRKAKKINQERHSQRCDTELKLSVARRMKDEEGFYY 586
+ IP+ +S D ++ VR+ + + HS RCD KL +AR E FY+
Sbjct: 723 IPTLEIPKGVMS-DPRARDNYRRRVRELMQQKRAAHSMRCDLNYKLEIARAFLGET-FYF 780
Query: 587 PHNLDFRGRAYPMHPHLNHLSSDVCRGVLEFAEGRPLGKSGLRWLKIHLANLFSGGVEKL 646
PHNLDFRGRAYP+ P+L+H+ D+ RG+L FAE +PLG+ GLRWLKIH++NL G +K
Sbjct: 781 PHNLDFRGRAYPIPPNLSHIGDDMSRGLLLFAESKPLGERGLRWLKIHVSNLM--GFDKA 838
Query: 647 SHDGRLAFVENHLYEIFDSAENPINGSRWWLTAEDPFQCLAACINLSEALKSSSPHSVIS 706
S D R AF HL ++FDSA+NP+ G +WW A+DP+QCLA CI L+ AL+S P
Sbjct: 839 SFDEREAFTMEHLEDVFDSADNPLEGRKWWTKADDPWQCLATCIELTNALRSEDPTKYEC 898
Query: 707 HLPIHQDGSCNGLQHYAALGRNTLEAAAVNLVAGEKPADVYSEIAVRVHEIMKRDSNKDP 766
LPIHQDG+CNGLQHYAALG + A VNL G++PADVYS +A V EI+ RD
Sbjct: 899 GLPIHQDGTCNGLQHYAALGGDINGARQVNLDIGDRPADVYSGVAQMVQEIITRDVEAGV 958
Query: 767 SKHPQALLAKILIDQVDRKLVKQTVMTSVYGVTFVGAREQIKRRLEEKGHITDDRQLFAA 826
+ AK+L ++ RK+VKQTVMT+VYGVTF+GA+ QI+R+L+++G + +R L+
Sbjct: 959 EE------AKLLDGKITRKVVKQTVMTTVYGVTFIGAKNQIERQLKDRGDVPAER-LYKC 1011
Query: 827 ACYAAKVTLTALGEIFEAARSIMGWLGDCAKVIASENQPVR------------------- 867
+ Y ++ L ++G++F+ A +I WL CA++IA P R
Sbjct: 1012 SIYLGRLVLDSIGDLFKGAAAIQTWLNRCARLIAKSIPPQRIEAALKQEKPGKNKSKKAL 1071
Query: 868 --------------WTTPLGLPVVQPYCKNERHLIRTSLQVLALQREGNLVKI--RKQRT 911
WTTPLGLPV QPY + ++ ++T+LQ + + ++ R Q T
Sbjct: 1072 ALSRIPKEQMTSVVWTTPLGLPVCQPYRRPKKKQVQTALQTVHIWDPSIPAEVDPRAQAT 1131
Query: 912 AFPPNFVHSLDGSHMMMTAVACR 934
AFPPNF+HSLD +HMMMTA+AC+
Sbjct: 1132 AFPPNFIHSLDATHMMMTALACK 1154
>gi|325187365|emb|CCA21903.1| DNAdependent RNA polymerase putative [Albugo laibachii Nc14]
Length = 1012
Score = 478 bits (1229), Expect = e-132, Method: Compositional matrix adjust.
Identities = 298/836 (35%), Positives = 460/836 (55%), Gaps = 95/836 (11%)
Query: 158 LYKRIKLQEYREMKKRKFNLLRRRQVKQETEAWERMVDEYKELEAKMIEKRLAPNLPHIK 217
L K QE +++K+ L RQ++ E ++ V+++ + + + A + +
Sbjct: 153 LQKCTTTQEVKDLKR-----LFARQIRLECAIYDMAVEKHLAVRQDVGKLGRASQVNAAQ 207
Query: 218 GLFLGWFGPLSEAIEREQKMQRTKKQK---AAYAPHIELLPADKVAVIVMHKMMGLVMAG 274
L +GW P I EQ+ K+ + Y P + LL A +A + ++ M+ +
Sbjct: 208 NLVVGWMEPAIALISNEQRDVLAGKRSLDSSIYGPALLLLDAKVLAALSINTMLNNCLV- 266
Query: 275 HEDRCVQVVQAAVHIGMAIEQEIRIHSFLEKTKNYKRKKIIADTEEVLSKEKELLRKRVN 334
+ + + ++ A+ +G +++ I +N +++K EK L
Sbjct: 267 -DSKGARFIKLALALGNIVQEHI--------CENKRKRK---------DSEKYFL----- 303
Query: 335 SLIKSKRVMEAQKLLKNEETKP--WGRDTQAKLGSRLVELLIETAYVQHPVNPADYSPPD 392
SL++ + +K ++N T W + K+G+ L++ + + YV PD
Sbjct: 304 SLVRGIQNDVFRKHMENVYTTAGYWDKRLNLKVGAALIDFIQRSCYV-----------PD 352
Query: 393 --VRPAFRHRFKTILKH-PGQKTTKRYGVVEC---------------DPLVLEGLDRSAK 434
++ A R T+ +H P + K V C D + L+
Sbjct: 353 RLLQAAGRKVHGTLEEHDPEKPPKKEQAFVHCYYYERNRRSGMFKMHDTIFNLILNTDPG 412
Query: 435 HMLIP----YVPMLVPPKKWKGYNKGGYLFLPSYVMRTHGSRKQQEALKSVTGNCMKKVF 490
++P Y+PMLVPPK+W+ N GGYL L + +MR Q + +K +++VF
Sbjct: 413 MNVLPWTARYLPMLVPPKRWENPNNGGYLKLHTKIMRQRDIVWQMDCVKRAP---LQEVF 469
Query: 491 EALDTLGSTKWRVNKQVLSVLESIWVSGGNIAGLVDRNDVLIPE-KPLSE-DMTEVQKWK 548
L+ L W +N+++L V+ IW GG L R D P+ KP E D + Q
Sbjct: 470 TTLNLLAEVPWVINQEILDVILRIWQEGGGFGDLPSREDFPFPDNKPEDEEDPEKRQALA 529
Query: 549 WSVRKAKKINQERHSQRCDTELKLSVARRMKDEEGFYYPHNLDFRGRAYPMHPHLNHLSS 608
+ K ++ N+E HS RCDT KL VA+ ++E+ Y+P+NLDFRGR YP+ P+LNHL S
Sbjct: 530 KAHAKVRQRNRELHSLRCDTLYKLQVAQEFRNEKEIYFPYNLDFRGRVYPIPPNLNHLGS 589
Query: 609 DVCRGVLEFAEGRPLGKSGLRWLKIHLANLFSGGVEKLSHDGRLAFVENHLYEIFDSAEN 668
D+ R +L F + +PLGK GLRWLKIHLAN+F GV+K S D R+AF E++L ++F SA +
Sbjct: 590 DMSRSLLLFRDRKPLGKDGLRWLKIHLANVF--GVDKCSFDERVAFTESNLTKVFASARD 647
Query: 669 P--INGSRWWLTAEDPFQCLAACINLSEALKSSSPHSVISHLPIHQDGSCNGLQHYAALG 726
P + + WW TAE PF L C L AL S P + +S++P+HQDGSCNGLQHYAALG
Sbjct: 648 PHGVGDAVWWKTAEYPFLALGVCFELKRALNSPDPETYLSNIPVHQDGSCNGLQHYAALG 707
Query: 727 RNTLEAAAVNLVAGEKPADVYSEIAVRVHEIMKRDSN----KDPSKHPQALL------AK 776
R+ VNLV +P DVY ++A +V +++ RD+N +D + + L A
Sbjct: 708 RDLKGGEQVNLVPASRPGDVYIKVAEQVMDLVNRDANLEIPEDATPERKLSLAHRKRCAT 767
Query: 777 ILIDQVDRKLVKQTVMTSVYGVTFVGAREQIKRRLEE----KGHITD---DRQLFAAACY 829
L+ + R++VKQTVMTSVYGVTF+GAR+QI+ RL+E G+++D D+Q++ ++CY
Sbjct: 768 FLLGTITRRVVKQTVMTSVYGVTFIGARKQIQARLQEANLSNGNLSDEEMDQQVYDSSCY 827
Query: 830 AAKVTLTALGEIFEAARSIMGWLGDCAKVIASENQPVRWTTPLGLPVVQPYCKNERHLIR 889
AA++T+ +L +F +AR+IM WLGDCA +A E Q + W TPLGLPVVQPY + +R
Sbjct: 828 AAEITMESLRNLFTSARNIMEWLGDCASKVAEEGQLMSWITPLGLPVVQPYRRFGSQQVR 887
Query: 890 TSLQ-VLALQREGNLVKIRKQRTAFPPNFVHSLDGSHMMMTAVAC-RDAGLHFAGL 943
T +Q VL + + V +Q++AFPPNFVHSLD +HM+MTA C + + FA +
Sbjct: 888 TKVQHVLMVSTDHLPVSPGRQKSAFPPNFVHSLDSTHMLMTAKKCLEEDAIAFAAV 943
>gi|270358663|gb|ACZ81452.1| Rpo41 [Cryptococcus heveanensis]
Length = 1256
Score = 478 bits (1229), Expect = e-131, Method: Compositional matrix adjust.
Identities = 275/759 (36%), Positives = 428/759 (56%), Gaps = 74/759 (9%)
Query: 240 TKKQKAAYAPHIELLPADKVAVIVMHKMMGLVMAGHEDRCVQVVQAAVHIGMAIEQEIR- 298
+K +++ +++LLP +K+A+I + ++M + +G ++ ++ + +G A+E E R
Sbjct: 311 SKMKRSVLVMYLQLLPVEKLALITILEVMRMSGSGGISDGMKALRGMLAVGKAVETEFRA 370
Query: 299 --IHSFLEKTKNYKRKKIIADTEEVLSKEKELLRKRVNSLIKSKRVMEAQKLLKNEE--- 353
I + ++ + I T++ + + +R+ +K+ ++ E L
Sbjct: 371 ETIKNIAGVDSHHWLRTIDPQTQKPSRQLVGSVWRRIGEQVKTSKLEETSDSLSTATHDD 430
Query: 354 -----TKPWGRDTQAKLGSRLVELLIETAYVQHPVNPADYSPPDV--RPAFRHRFKTILK 406
T PW + Q +GS LV+ L++ A V+ + V +PAF H ++ I
Sbjct: 431 LHQVWTPPWSQMAQLGVGSELVDALLKVAKVERVGRNPETGEEVVEEQPAFTHAYEYI-- 488
Query: 407 HPGQKTTKRYGVVECDPLVLEGLDRSAKHMLI--PYVPMLVPPKKWKGYNKGGYLFLPSY 464
K+ GV++ +P+V L R + ++I ++PMLV PK W +N GGYL
Sbjct: 489 -----RGKKLGVIKHNPVVAARLARDSVGVVIHPKHLPMLVEPKPWTSHNNGGYLLHSVP 543
Query: 465 VMRTHGSRKQQEALKSVTGNC-MKKVFEALDTLGSTKWRVNKQVLSVLESIWVSGGNIAG 523
+MR S +QQ LK+ + ++ VF LD L ST W +N++V V+ ++W SG IA
Sbjct: 544 IMRYKESAEQQSYLKTASEQGHLEPVFHGLDVLSSTAWSINRKVFDVILNVWNSGEAIAD 603
Query: 524 LV---DRNDVLIPEKPLSEDMTEVQKWKWSVRKAKKI---NQERHSQRCDTELKLSVARR 577
+ +++ +PEKP D + QK + + K + ++ H++RC L +AR
Sbjct: 604 IPASEEKSTYDVPEKPDPRDQ-DPQKRSLYIERMKSVMAAQRKDHAERCKFNYNLEIARS 662
Query: 578 MKDEEGFYYPHNLDFRGRAYPMHPHLNHLSSDVCRGVLEFAEGRPLGKSGLRWLKIHLAN 637
++ FY PHN+DFRGRAYP+ PHL+ + D+CRG+L F + LG++GL+WL IHLAN
Sbjct: 663 YLNDV-FYLPHNMDFRGRAYPIPPHLSPVGDDLCRGLLTFGNKKALGETGLKWLHIHLAN 721
Query: 638 LFSGGVEKLSHDGRLAFVENHLYEIFDSAENPINGSRWWLTAEDPFQCLAACINLSEALK 697
++ G +K S + R F + H +IFDSA+NP++G RWWL AEDP+QCLA C ++ AL+
Sbjct: 722 VY--GFDKASFEERARFAQEHEADIFDSADNPLDGKRWWLQAEDPWQCLATCFEIAAALR 779
Query: 698 SSSPHSVISHLPIHQDGSCNGLQHYAALGRNTLEAAAVNLVAGEKPADVYSEIAVRVHEI 757
SS P S LPIHQDG+CNG+QHYAALG + A AVNL G++PAD+Y+ + V+++
Sbjct: 780 SSDPTQYESSLPIHQDGTCNGMQHYAALGGDVRGAKAVNLEHGDRPADIYTGVVNIVNKV 839
Query: 758 MKRDSNKDPSKHPQALLAKILIDQ-VDRKLVKQTVMTSVYGVTFVGAREQIKRRLEEKGH 816
++ D K L +LI + + RK+VKQTVMT+VYGVTFVGAREQI ++L +G
Sbjct: 840 IEEDQKK-------GLDVALLIKKPLGRKVVKQTVMTTVYGVTFVGAREQIAKQLTARGD 892
Query: 817 ITDDRQLFAAACYAAKVTLTALGEIFEAARSIMGWLGDCAKVIASENQPVR--------- 867
+ +F + Y AK L +G++F A++IM WL AK+I+ P R
Sbjct: 893 FAQE-HVFLVSGYIAKTVLNCIGDLFSGAKAIMDWLTTSAKLISRSVPPERVEEAANNLT 951
Query: 868 ---------------------WTTPLGLPVVQPYCKNERHLIRTSLQVLALQREG--NLV 904
WTTPLGLPVVQPY K ++ I T+LQ + + + V
Sbjct: 952 TTLRNGKVKSRAAREFMTSVVWTTPLGLPVVQPYRKAQKKQIMTALQTVYISDPNAPSEV 1011
Query: 905 KIRKQRTAFPPNFVHSLDGSHMMMTAVACRDAGLHFAGL 943
+KQ TAFPPNF+HSLD +HM++TA+ CR + FA +
Sbjct: 1012 SPQKQATAFPPNFIHSLDATHMLLTALKCRQNEIAFASV 1050
>gi|170097643|ref|XP_001880041.1| predicted protein [Laccaria bicolor S238N-H82]
gi|164645444|gb|EDR09692.1| predicted protein [Laccaria bicolor S238N-H82]
Length = 960
Score = 477 bits (1228), Expect = e-131, Method: Compositional matrix adjust.
Identities = 302/824 (36%), Positives = 451/824 (54%), Gaps = 94/824 (11%)
Query: 181 RQVKQETEAWE----RMVDEYKELEAKMI--EKRLAPNLPHIKGLFLGWFGPLSEAIERE 234
RQ ET +E RM +E++ LE+ I E RL + ++ W L +E E
Sbjct: 1 RQKHLETSVYEIARERMKEEHEYLESLGINAENRLKDST--LQSWMWQWHQNLKSRLESE 58
Query: 235 QKM---------QRTKKQKAAYAPHIELLPADKVAVIVMHKMMGLVMAGHEDRCVQVVQA 285
K+ R + +P++ L+ AD+++ I + ++M L +G + ++ +A
Sbjct: 59 IKLIAAFEAKMLNRHDQTTQLLSPYLALVKADRLSYITILELMRLQGSGGVNHGMKTTRA 118
Query: 286 AVHIGMAIEQEIRIHSFLEKTKNYKRKKIIADTEEVLSKEKELLRKRVNSLIKSKRVMEA 345
+ IG A+E E + + +T + + + S + KR M A
Sbjct: 119 LIAIGKAVEMEYKAQ--MCRTNDIAIPTMTGHSTNFFSV--------LGYSNLQKRRMAA 168
Query: 346 QKLLKNEE--TKPWGRDTQAKLGSRLVELLIETAYV--QHPVNPADYSPPDVRPAFRHRF 401
+ +++ E T PW + ++K+G LVE L++ AYV Q S + +PAF H +
Sbjct: 169 ARHMQDGEAWTTPWSQAVRSKIGGILVECLMDVAYVRRQRDDQVTGKSVTEDQPAFYHAY 228
Query: 402 KTILKHPGQKTTKRYGVVECDPLVLEGL--DRSAKHMLIPYVPMLVPPKKWKGYNKGGYL 459
+ + + TK G+++ +P V E L DR + + ++PMLVPPK W +GGYL
Sbjct: 229 EYV------RGTK-LGILKLNPAVAERLSTDRLRETIHPRHLPMLVPPKPWMHIRQGGYL 281
Query: 460 FLPSYVMRTHGSRKQQEAL-KSVTGNCMKKVFEALDTLGSTKWRVNKQVLSVLESIWVSG 518
+ + VMR S +Q+ L K++ M+ V LD LGST WR+NK V V+ +W SG
Sbjct: 282 YNKTSVMRFKESIEQETYLQKAIDDGKMELVLAGLDVLGSTPWRINKNVYEVVLKVWNSG 341
Query: 519 GNIA----GLVDRNDVLIPE---KPLSEDMTEVQKWKWSVRKAKKINQERHSQRCDTELK 571
+ + D+ IPE K L +Q+ K S + K N HS+RC+ K
Sbjct: 342 ERMGKIPPAVYDQPAPEIPENYEKDLQARSVHLQRQK-SYTQGKANN---HSERCNVNYK 397
Query: 572 LSVARRMKDEEGFYYPHNLDFRGRAYPMHPHLNHLSSDVCRGVLEFAEGRPLGKSGLRWL 631
+ +AR +E Y PHNLDFRGRAYP+ PHL+H+ D+CRG+L FA+ +PLG+ GL WL
Sbjct: 398 IEIARAFLHDE-LYMPHNLDFRGRAYPIPPHLSHIGDDLCRGLLLFADAKPLGERGLWWL 456
Query: 632 KIHLANLFSGGVEKLSHDGRLAFVENHLYEIFDSAENPINGSRWWLTAEDPFQCLAACIN 691
KIHLANL+ G +K S R +V L +I DSA NP++G RWW +DP+Q LAAC+
Sbjct: 457 KIHLANLY--GYDKASFQERADWVMERLDDIADSATNPLDGKRWWTKGDDPWQVLAACME 514
Query: 692 LSEALKSSSPHSVISHLPIHQDGSCNGLQHYAALGRNTLEAAAVNLVAGEKPADVYSEIA 751
L AL+S P + +S LP+HQDG+CNGLQHYAALG + + A VNL AG++P+DVYS +
Sbjct: 515 LHAALQSEDPLAYMSTLPVHQDGTCNGLQHYAALGGDAVGAKQVNLAAGDRPSDVYSYVG 574
Query: 752 VRVHEIMKRDSNKDPSKHPQALLAKILIDQVDRKLVKQTVMTSVYGVTFVGAREQIKRRL 811
V + ++ D+ +AK+L ++ RK+VKQTVMT+VYGVTFVGAREQI+++L
Sbjct: 575 RLVDQQIEADAANGLE------MAKLLQGKITRKVVKQTVMTTVYGVTFVGAREQIEKQL 628
Query: 812 EEKGHITDDRQLFAAACYAAKVTLTALGEIFEAARSIMGWLGDCAKVIASENQPVR---- 867
+++ H D + AA Y AK LT +G+ F A+ I WL CA++I+ P R
Sbjct: 629 KDR-HDIPDELCWTAASYLAKKVLTCIGDTFTGAKHIQNWLNLCARLISKSIAPDRFIDA 687
Query: 868 --------------------------WTTPLGLPVVQPYCKNERHLIRTSLQVLALQREG 901
WTTPL LP++QPY K+ R + T++Q + +
Sbjct: 688 IAAPKKRGRPAVAMSRFKKEQMTSVVWTTPLQLPIIQPYRKHARKQVMTAVQSVFISDPS 747
Query: 902 NLVKIR--KQRTAFPPNFVHSLDGSHMMMTAVACRDAGLHFAGL 943
+ ++ KQ +AFPPNF+HSLD +HMM+TA+ C GL FA +
Sbjct: 748 SPAEVNSLKQASAFPPNFIHSLDATHMMLTALECHSRGLTFASV 791
>gi|151940727|gb|EDN59114.1| mitochondrial RNA polymerase [Saccharomyces cerevisiae YJM789]
Length = 1351
Score = 477 bits (1228), Expect = e-131, Method: Compositional matrix adjust.
Identities = 302/817 (36%), Positives = 435/817 (53%), Gaps = 97/817 (11%)
Query: 177 LLRRRQVKQETEAWERMVDEYKELEAKMIEKRLAPNL--------PHIKGLFLGWFGPLS 228
+L R + E W+ +E K IEK L L P +K LS
Sbjct: 418 VLENRATEAARERWKHDFEEAKARGDISIEKNLNVKLWKWYNEMLPLVKEEINHCRSLLS 477
Query: 229 EAIEREQKMQRTKKQKAAYAPHIELLPADKVAVIVMHKMMGLVMAGHEDRCVQVVQAAVH 288
E + ++ + + + Y P++ L+ K+ VI + +++ L G ++ +A +
Sbjct: 478 EKLSDKKSLNKVDTNRLGYGPYLTLIDPGKMCVITILELLKLNSTGGVIEGMRTARAVIS 537
Query: 289 IGMAIEQEIRIHSFLEKTKNYKRKKIIADTEEVLSKEKELLRKRVNSLIKSKRVMEAQKL 348
+G AIE E R +E+VL E + R VN K+ E +KL
Sbjct: 538 VGKAIEMEFR-------------------SEQVLKSESQAFRD-VN-----KKSPEFKKL 572
Query: 349 LKN----------EETKP-WGRDTQAKLGSRLVELLIETAYVQ----HPVNPADYSPPDV 393
++N E++K W + +A++GS L+ +LI+ A V PV A
Sbjct: 573 VQNAKSVFRSSQIEQSKILWPQSIRARIGSVLISMLIQVAKVSVQGVDPVTKAKVHGE-- 630
Query: 394 RPAFRHRFKTILKHPGQKTTKRYGVVECDPLVLEGLD--RSAKHMLIPYVPMLVPPKKWK 451
PAF H ++ H G K GV++ ++ L+ R + +PMLV PK W
Sbjct: 631 APAFAHGYQY---HNGSK----LGVLKIHKTLIRQLNGERLIASVQPQLLPMLVEPKPWV 683
Query: 452 GYNKGGYLFLPSYVMRTHGSRKQQEALKSVTGNC-MKKVFEALDTLGSTKWRVNKQVLSV 510
+ GGY + S ++RT S +Q LK+ + N + +V++ L+ LG T W VN++V V
Sbjct: 684 NWRSGGYHYTQSTLLRTKDSPEQVAYLKAASDNGDIDRVYDGLNVLGRTPWTVNRKVFDV 743
Query: 511 LESIWVSGGNIAGLVDRND--VLIPEKPLSEDMTEVQKWKWSVRK-AKKINQERHSQRCD 567
+ +W G + D VL P P + D + ++ WK V+ A K + +R S RCD
Sbjct: 744 VSQVWNKGEGFLDIPGAQDEMVLPPAPPKNSDPSILRAWKLQVKTIANKFSSDR-SNRCD 802
Query: 568 TELKLSVARRMKDEEGFYYPHNLDFRGRAYPMHPHLNHLSSDVCRGVLEFAEGRPLGKSG 627
T KL +AR E+ Y+PHNLDFRGRAYP+ PH NHL +D+ RG+L F G+ LG SG
Sbjct: 803 TNYKLEIARAFLGEK-LYFPHNLDFRGRAYPLSPHFNHLGNDMSRGLLIFWHGKKLGPSG 861
Query: 628 LRWLKIHLANLFSGGVEKLSHDGRLAFVENHLYEIFDSAENPINGSRWWLTAEDPFQCLA 687
L+WLKIHL+NLF G +KL R+AF E+HL +I DSAENP+ G RWW TA+ P+Q LA
Sbjct: 862 LKWLKIHLSNLF--GFDKLPLKDRVAFTESHLQDIKDSAENPLTGDRWWTTADKPWQALA 919
Query: 688 ACINLSEALKSSSPHSVISHLPIHQDGSCNGLQHYAALGRNTLEAAAVNLVAGEKPADVY 747
C L+E +K +P ISH P+HQDG+CNGLQHYAALG + A VNLV +KP DVY
Sbjct: 920 TCFELNEVMKMDNPEEFISHQPVHQDGTCNGLQHYAALGGDVEGATQVNLVPSDKPQDVY 979
Query: 748 SEIAVRVHEIMKRDSNKDPSKHPQALLAKILIDQVDRKLVKQTVMTSVYGVTFVGAREQI 807
+ +A V + ++ + K AKIL D++ RK+VKQTVMT+VYGVT+VGA QI
Sbjct: 980 AHVARLVQKRLEIAAEKGDEN------AKILKDKITRKVVKQTVMTNVYGVTYVGATFQI 1033
Query: 808 KRRLEEKGHITDDR-QLFAAACYAAKVTLTALGEIFEAARSIMGWLGDCAKVIASE---- 862
++L I DDR + + Y K +A+ E+F +A I WLG+ AK I+
Sbjct: 1034 AKQLSP---IFDDRKESLDFSKYLTKHVFSAIRELFHSAHLIQDWLGESAKRISKSIRLD 1090
Query: 863 ---------NQP-----VRWTTPLGLPVVQPYCKNERHLIRTSLQVLALQR--EGNLVKI 906
N+P V WTTPLGLP+VQPY + + + T+LQ + + N V
Sbjct: 1091 VDEKSFKNGNKPDFMSSVIWTTPLGLPIVQPYREESKKQVETNLQTVFISDPFAVNPVNA 1150
Query: 907 RKQRTAFPPNFVHSLDGSHMMMTAVACRDAGLHFAGL 943
R+Q+ PPNF+HSLD SHM+++A C GL FA +
Sbjct: 1151 RRQKAGLPPNFIHSLDASHMLLSAAECGKQGLDFASV 1187
>gi|409043331|gb|EKM52814.1| hypothetical protein PHACADRAFT_261459 [Phanerochaete carnosa
HHB-10118-sp]
Length = 1324
Score = 476 bits (1226), Expect = e-131, Method: Compositional matrix adjust.
Identities = 288/817 (35%), Positives = 450/817 (55%), Gaps = 86/817 (10%)
Query: 181 RQVKQETEAWERMVDEYKELEAKMIEK----RLAPNLPHIKGLFLGWFGPLSEAIERE-- 234
RQ E ++ V+ +K EA+M E+ + + ++G W L + E
Sbjct: 373 RQKLLEESVYDVAVERWKH-EAEMFEELGLGKKGLDSTDLRGWLWQWHQKLQMRVAGEIQ 431
Query: 235 ----QKMQRTKKQKAA-YAPHIELLPADKVAVIVMHKMMGLVMAGHEDRCVQVVQAAVHI 289
+M T++ + +P + L+ +K+++I + ++M L AG ++ +A + +
Sbjct: 432 NLIKAEMALTERNAGSRLSPFLTLIKPEKLSLITILELMHLQGAGGVSDGMKTARALISV 491
Query: 290 GMAIEQEIRIHSFLEKTKNYKRKKIIADTEEVLSKEKELLRKRVNSLIKSKRVMEAQKLL 349
G A+E +E +K IA +++ + +R + A+K +
Sbjct: 492 GKAVE--------IEYKAEMCKKNNIAVPSPATQRQQSFFSNLGYRALHERR-LAARKYM 542
Query: 350 KNEE--TKPWGRDTQAKLGSRLVELLIETAYVQH-PVNPADYSPPDVRPAFRHRFKTILK 406
++ E T W + + ++GS LV+ L++ A V ++ + +PAF H ++ +
Sbjct: 543 EDYEEWTSEWTQTIRVRVGSFLVDALMDVATVSRTAIDKHGELHTEEQPAFYHSYEYLR- 601
Query: 407 HPGQKTTKRYGVVECDPLVLEGLDRS-AKHMLIP-YVPMLVPPKKWKGYNKGGYLFLPSY 464
GQK GV++ +P+V + L + + L P ++PMLV PK W +++GGYL+ +
Sbjct: 602 --GQK----LGVIKLNPVVADRLAKDQVRETLHPRHLPMLVRPKPWLSHDQGGYLYNKTS 655
Query: 465 VMRTHGSRKQQEALKSVTG-NCMKKVFEALDTLGSTKWRVNKQVLSVLESIWVSGGNIA- 522
VMR SR+QQ ++ + ++ V+ +LD LG T W++N+ + V+ +W SG +
Sbjct: 656 VMRYKDSREQQSYVREASSQGALELVYASLDVLGGTPWKINRHIFDVVLKVWNSGERLGK 715
Query: 523 ---GLVDRNDVLIPEKPLSEDMTEVQKWKWSVRK----AKKINQERHSQRCDTELKLSVA 575
+ D+ + PEKP D K + R +KK N HS RC+T K+ +A
Sbjct: 716 IPPAMYDQPE---PEKPADHDTDPKAKVAYLQRHKAYMSKKANN--HSDRCNTNYKIEIA 770
Query: 576 RRMKDEEGFYYPHNLDFRGRAYPMHPHLNHLSSDVCRGVLEFAEGRPLGKSGLRWLKIHL 635
R + Y PHN+DFRGRAYP+ P+LNHL D+ RG+L+FAE +PLG+ GLRW+KIHL
Sbjct: 771 RAFLGDT-VYLPHNVDFRGRAYPIPPNLNHLGDDLSRGLLKFAEAKPLGERGLRWMKIHL 829
Query: 636 ANLFSGGVEKLSHDGRLAFVENHLYEIFDSAENPINGSRWWLTAEDPFQCLAACINLSEA 695
ANL+ G +K S D R+ FV HL +IFDSA NP+ G WW A+DP+QCLA C+ + A
Sbjct: 830 ANLY--GYDKASFDERVVFVHEHLDDIFDSATNPLEGRGWWKKADDPWQCLATCMEIRAA 887
Query: 696 LKSSSPHSVISHLPIHQDGSCNGLQHYAALGRNTLEAAAVNLVAGEKPADVYSEIAVRVH 755
L+S P S LP+HQDG+CNGLQHYAALG + A VNL ++P+DVY+ +A V
Sbjct: 888 LESPEPTEYASSLPVHQDGTCNGLQHYAALGGDAQGAQQVNLSVTDRPSDVYTHVATMVE 947
Query: 756 EIMKRDSNKDPSKHPQALLAKILIDQVDRKLVKQTVMTSVYGVTFVGAREQIKRRLEEKG 815
++ +D+ D AK+L ++ RK+VKQTVMT+VYGVTF+GAR+QI+R+L ++
Sbjct: 948 SVLAQDAKND------LRYAKMLSGKIARKVVKQTVMTTVYGVTFIGARDQIERQLRDRR 1001
Query: 816 HITDDRQLFAAACYAAKVTLTALGEIFEAARSIMGWLGDCAKVIASENQPVR-------- 867
+ + + + AA Y AK+TL +G++F A+ I WL AK+I+ P R
Sbjct: 1002 DLPAE-ECWLAAAYLAKITLACIGDLFTGAKHIQNWLNLSAKLISKSIPPERIEEATKPS 1060
Query: 868 -------------------WTTPLGLPVVQPYCKNERHLIRTSLQVLALQREG--NLVKI 906
WTTPLGLP+VQPY + +R I T+LQ + + V
Sbjct: 1061 AKKGRVETRLKKEQMTSVIWTTPLGLPIVQPYRQTKRKQIHTALQTVFISDPNVPAAVNS 1120
Query: 907 RKQRTAFPPNFVHSLDGSHMMMTAVACRDAGLHFAGL 943
KQ +AFPPNF+HSLD +HMM+TA+ CR+ + FA +
Sbjct: 1121 TKQASAFPPNFIHSLDATHMMLTALQCRNRDITFASV 1157
>gi|14318482|ref|NP_116617.1| Rpo41p [Saccharomyces cerevisiae S288c]
gi|308153492|sp|P13433.2|RPOM_YEAST RecName: Full=DNA-directed RNA polymerase, mitochondrial; Flags:
Precursor
gi|836718|dbj|BAA09203.1| mithochondrial DNA-directed RNA polymerase [Saccharomyces cerevisiae]
gi|285811859|tpg|DAA12404.1| TPA: Rpo41p [Saccharomyces cerevisiae S288c]
gi|349577881|dbj|GAA23048.1| K7_Rpo41p [Saccharomyces cerevisiae Kyokai no. 7]
gi|392299635|gb|EIW10728.1| Rpo41p [Saccharomyces cerevisiae CEN.PK113-7D]
gi|1589360|prf||2210408E RNA polymerase
Length = 1351
Score = 476 bits (1225), Expect = e-131, Method: Compositional matrix adjust.
Identities = 302/817 (36%), Positives = 435/817 (53%), Gaps = 97/817 (11%)
Query: 177 LLRRRQVKQETEAWERMVDEYKELEAKMIEKRLAPNL--------PHIKGLFLGWFGPLS 228
+L R + E W+ +E K IEK L L P +K LS
Sbjct: 418 VLENRATEAARERWKHDFEEAKARGDISIEKNLNVKLWKWYNEMLPLVKEEINHCRSLLS 477
Query: 229 EAIEREQKMQRTKKQKAAYAPHIELLPADKVAVIVMHKMMGLVMAGHEDRCVQVVQAAVH 288
E + ++ + + + Y P++ L+ K+ VI + +++ L G ++ +A +
Sbjct: 478 EKLSDKKGLNKVDTNRLGYGPYLTLIDPGKMCVITILELLKLNSTGGVIEGMRTARAVIS 537
Query: 289 IGMAIEQEIRIHSFLEKTKNYKRKKIIADTEEVLSKEKELLRKRVNSLIKSKRVMEAQKL 348
+G AIE E R +E+VL E + R VN K+ E +KL
Sbjct: 538 VGKAIEMEFR-------------------SEQVLKSESQAFRD-VN-----KKSPEFKKL 572
Query: 349 LKN----------EETKP-WGRDTQAKLGSRLVELLIETAYVQ----HPVNPADYSPPDV 393
++N E++K W + +A++GS L+ +LI+ A V PV A
Sbjct: 573 VQNAKSVFRSSQIEQSKILWPQSIRARIGSVLISMLIQVAKVSVQGVDPVTKAKVHGE-- 630
Query: 394 RPAFRHRFKTILKHPGQKTTKRYGVVECDPLVLEGLD--RSAKHMLIPYVPMLVPPKKWK 451
PAF H ++ H G K GV++ ++ L+ R + +PMLV PK W
Sbjct: 631 APAFAHGYQY---HNGSK----LGVLKIHKTLIRQLNGERLIASVQPQLLPMLVEPKPWV 683
Query: 452 GYNKGGYLFLPSYVMRTHGSRKQQEALKSVTGNC-MKKVFEALDTLGSTKWRVNKQVLSV 510
+ GGY + S ++RT S +Q LK+ + N + +V++ L+ LG T W VN++V V
Sbjct: 684 NWRSGGYHYTQSTLLRTKDSPEQVAYLKAASDNGDIDRVYDGLNVLGRTPWTVNRKVFDV 743
Query: 511 LESIWVSGGNIAGLVDRND--VLIPEKPLSEDMTEVQKWKWSVRK-AKKINQERHSQRCD 567
+ +W G + D VL P P + D + ++ WK V+ A K + +R S RCD
Sbjct: 744 VSQVWNKGEGFLDIPGAQDEMVLPPAPPKNSDPSILRAWKLQVKTIANKFSSDR-SNRCD 802
Query: 568 TELKLSVARRMKDEEGFYYPHNLDFRGRAYPMHPHLNHLSSDVCRGVLEFAEGRPLGKSG 627
T KL +AR E+ Y+PHNLDFRGRAYP+ PH NHL +D+ RG+L F G+ LG SG
Sbjct: 803 TNYKLEIARAFLGEK-LYFPHNLDFRGRAYPLSPHFNHLGNDMSRGLLIFWHGKKLGPSG 861
Query: 628 LRWLKIHLANLFSGGVEKLSHDGRLAFVENHLYEIFDSAENPINGSRWWLTAEDPFQCLA 687
L+WLKIHL+NLF G +KL R+AF E+HL +I DSAENP+ G RWW TA+ P+Q LA
Sbjct: 862 LKWLKIHLSNLF--GFDKLPLKDRVAFTESHLQDIKDSAENPLTGDRWWTTADKPWQALA 919
Query: 688 ACINLSEALKSSSPHSVISHLPIHQDGSCNGLQHYAALGRNTLEAAAVNLVAGEKPADVY 747
C L+E +K +P ISH P+HQDG+CNGLQHYAALG + A VNLV +KP DVY
Sbjct: 920 TCFELNEVMKMDNPEEFISHQPVHQDGTCNGLQHYAALGGDVEGATQVNLVPSDKPQDVY 979
Query: 748 SEIAVRVHEIMKRDSNKDPSKHPQALLAKILIDQVDRKLVKQTVMTSVYGVTFVGAREQI 807
+ +A V + ++ + K AKIL D++ RK+VKQTVMT+VYGVT+VGA QI
Sbjct: 980 AHVARLVQKRLEIAAEKGDEN------AKILKDKITRKVVKQTVMTNVYGVTYVGATFQI 1033
Query: 808 KRRLEEKGHITDDR-QLFAAACYAAKVTLTALGEIFEAARSIMGWLGDCAKVIASE---- 862
++L I DDR + + Y K +A+ E+F +A I WLG+ AK I+
Sbjct: 1034 AKQLSP---IFDDRKESLDFSKYLTKHVFSAIRELFHSAHLIQDWLGESAKRISKSIRLD 1090
Query: 863 ---------NQP-----VRWTTPLGLPVVQPYCKNERHLIRTSLQVLALQR--EGNLVKI 906
N+P V WTTPLGLP+VQPY + + + T+LQ + + N V
Sbjct: 1091 VDEKSFKNGNKPDFMSSVIWTTPLGLPIVQPYREESKKQVETNLQTVFISDPFAVNPVNA 1150
Query: 907 RKQRTAFPPNFVHSLDGSHMMMTAVACRDAGLHFAGL 943
R+Q+ PPNF+HSLD SHM+++A C GL FA +
Sbjct: 1151 RRQKAGLPPNFIHSLDASHMLLSAAECGKQGLDFASV 1187
>gi|343427710|emb|CBQ71237.1| related to RPO41-DNA-directed RNA polymerase, mitochondrial
[Sporisorium reilianum SRZ2]
Length = 1551
Score = 476 bits (1224), Expect = e-131, Method: Compositional matrix adjust.
Identities = 286/753 (37%), Positives = 430/753 (57%), Gaps = 86/753 (11%)
Query: 249 PHIELLPADKVAVIVMHKMMGLVMAGHEDRCVQVVQAAVHIGMAIEQEIRIHSFLEKTKN 308
P + LL K+A+I + ++M + G ++ +A + +G AIE E HS + +
Sbjct: 625 PFLHLLSPAKLALITILELMRMSGNGGVSDGMKTTRALLAVGRAIEMEY--HSEVVR--- 679
Query: 309 YKRKKIIADTEEVLSKEKELLRKRVNSLIKSKRVMEAQKLLKNEE----TKP-WGRDTQA 363
K KI ++ + LRKR + ++R ++A ++ + EE + P W + +A
Sbjct: 680 -KNPKIFSNAHAA----QATLRKRGLIDLAARREIKAWQMQQEEEGVLSSIPRWTQPVRA 734
Query: 364 KLGSRLVELLIETAYVQHPVNPADYSP-PDVRPAFRHRFKTILKHPGQKTTKRYGVVECD 422
++GS LV+ L+ A V D + +PAF ++ + K+ GV++ +
Sbjct: 735 RVGSYLVQHLMHVATVNRKATDRDGVLWEEDQPAFYSTYQYL-------GGKKLGVIKLN 787
Query: 423 PLVLEGLDR-SAKHMLIP-YVPMLVPPKKWKGYNKGGYLFLPSYVMRTHGSRKQQEALKS 480
++ + LD+ S + L P ++PMLVPPK W ++ GGY + MR S +Q L++
Sbjct: 788 EVIAKRLDKDSIQETLHPRHLPMLVPPKPWTSHDSGGYYSVRQSAMRFKDSAEQGSYLRA 847
Query: 481 VTGNC-MKKVFEALDTLGSTKWRVNKQVLSVLESIWVSGGNIAGLVD-RNDVLIPEKPLS 538
+ N + V ALD LG+T W++NK + V+ +W SG ++A + D P+KP +
Sbjct: 848 ASDNGDLDTVLAALDVLGNTSWKINKPIFDVMLEVWNSGEDLADMPPIEMDAPEPQKPDN 907
Query: 539 EDMTEVQKWKWSVRKAKKINQER---HSQRCDTELKLSVARRMKDEEGFYYPHNLDFRGR 595
D +++ +++ K+ NQ+R HSQRCD KL +AR E FY+PHN+DFRGR
Sbjct: 908 YDH-DMKARSVYLQRLKQWNQQRASNHSQRCDVNYKLEIARAYVGER-FYFPHNMDFRGR 965
Query: 596 AYPMHPHLNHLSSDVCRGVLEFAEGRPLGKSGLRWLKIHLANLFSGGVEKLSHDGRLAFV 655
AYPM PHLNH+ +D+CRG+L FA+ +PLGK+GLRWL+IH++N+F G +K S R F
Sbjct: 966 AYPMPPHLNHIGNDLCRGLLMFADSKPLGKAGLRWLRIHISNVF--GYDKASFAEREQFA 1023
Query: 656 ENHLYEIFDSAENPINGSRWWLTAEDPFQCLAACINLSEALK-SSSPHSVISHLPIHQDG 714
+H +I DS E P++G+RWWL A+DP+QCLA+C+ L AL+ P + S LP+HQDG
Sbjct: 1024 IDHEADIRDSVERPLDGNRWWLKADDPWQCLASCMELKAALEHPEGPEAYESSLPVHQDG 1083
Query: 715 SCNGLQHYAALGRNTLEAAAVNLVAGEKPADVYSEIAVRVHEIMKRDSNKDPSKHPQALL 774
+CNGLQHYAALG + A VNL GEKPADVYS +A V +++ ++ K L
Sbjct: 1084 TCNGLQHYAALGGDLAGAKQVNLSRGEKPADVYSGVADLVIKVLDDEAAKGDR------L 1137
Query: 775 AKILIDQVDRKLVKQTVMTSVYGVTFVGAREQIKRRLEEKGHITDDRQLFAAACYAAKVT 834
A IL +V RK+VKQTVMT+VYGVTF+GA+ Q+ R+L ++G + + LFAAA + AKV
Sbjct: 1138 ASILQGKVTRKVVKQTVMTTVYGVTFIGAKNQVMRQLADRGDVPAE-DLFAAASHLAKVI 1196
Query: 835 LTALGEIFEAARSIMGWLGDCAKVIA---------------------------------- 860
++ +G +F A+ I WL AKVIA
Sbjct: 1197 MSCIGNLFSGAQKIQDWLSFSAKVIAKSIPAQRLEEATRPYMPSETALKRADARGFSRDP 1256
Query: 861 --------SENQPVRWTTPLGLPVVQPYCKNERHLIRTSLQVLALQR--EGNLVKIRKQR 910
+ V WTT LGLPVVQPY K+++ + T++Q + + + V KQ
Sbjct: 1257 AKADRIVKEQMTSVIWTTALGLPVVQPYRKSKKKQVSTAMQTVFIHDPLSNSEVSPAKQA 1316
Query: 911 TAFPPNFVHSLDGSHMMMTAVACRDAGLHFAGL 943
+AFPPNF+HSLD +HM++TA+ C AGL FA +
Sbjct: 1317 SAFPPNFIHSLDATHMILTALECHAAGLTFASV 1349
>gi|296806639|ref|XP_002844119.1| DNA-directed RNA polymerase [Arthroderma otae CBS 113480]
gi|238845421|gb|EEQ35083.1| DNA-directed RNA polymerase [Arthroderma otae CBS 113480]
Length = 1375
Score = 475 bits (1223), Expect = e-131, Method: Compositional matrix adjust.
Identities = 294/841 (34%), Positives = 456/841 (54%), Gaps = 91/841 (10%)
Query: 156 KGLYKRIKLQEYREMKKRKFNLLRRRQVKQE--TEAWERMVDEYKEL--EAKMIEKRLAP 211
K L+ R E RE+ +++ LR+ Q++++ T A ER E + + + + +E RL
Sbjct: 350 KNLWGRTP--EERELNRKR---LRQEQLEKDSLTSAIERWRKESEGVIGQRRQVEARLNA 404
Query: 212 NLPHIKGLFLGWFGPLSEAIEREQKMQRTKK------QKAAYAPHIELLPADKVAVIVMH 265
+ + G G + E +E ++ + KK ++ Y P + + K+A + +
Sbjct: 405 ---FMYQWYQGVLGKIKEELELAKRSESKKKLTPEESERYEYIPFLLAIGPSKLAAVTIL 461
Query: 266 KMMGLVMAGHEDRCVQVVQAAVHIGMAIEQEIRIHSFLEKTKNYKRKKIIADTE-EVLSK 324
++G + + D+ +++ HIG A++ E I + + N A+TE E
Sbjct: 462 SVLGSIGSSGMDKGIKLSSLFTHIGRAVKDEYIIETTRQSAVNE------AETENEAYYL 515
Query: 325 EKELLRKRV-NSLIKSKRVMEAQKLLKNEETKP---WGRDTQAKLGSRLVELLIETAYVQ 380
K + +V NS K + M+ K+ E +P W T+ K+G+ L +L TA +
Sbjct: 516 NKTFRQMKVYNSTGKFRSYMQ-----KHTEGRPPVHWPTSTEIKIGALLSSMLFSTAEI- 569
Query: 381 HPVNPADYSPPDVR----PAFRHRFKTILKHPGQKTTKRYGVVECDPLVLEGLDRS-AKH 435
P + D +VR PAF+H ++ H G V+ V+E L + + +
Sbjct: 570 -PTSHKDPVTEEVRYVNEPAFQHVYQLQKGH-------NVGYVQLHEKVVERLRKEPSGN 621
Query: 436 MLIPYVPMLVPPKKWKGYNKGGYLFLPSYVMRTHGSRKQQEALKSVTGNC-MKKVFEALD 494
+L ++PM+ PP+ W +GG+L P V+RT Q + L++ + ++++++ L
Sbjct: 622 LLAKHLPMVSPPRPWVSNTQGGFLTQPVQVVRTRHDDAQNQYLQAASERGDLEELYKGLT 681
Query: 495 TLGSTKWRVNKQVLSVLESIWVSGGNIAGLVDRN-DVLIPEKPLSEDMTEVQKWKWSVRK 553
LG T W++N+ V V+ W SG +A +V N ++ PEKP ++D V+ + + +
Sbjct: 682 ILGKTGWKINRPVFDVMLEAWNSGEEVANIVAANLNITEPEKPDADDREAVKAYYRAKTR 741
Query: 554 AKKINQERHSQRCDTELKLSVARRMKDEEGFYYPHNLDFRGRAYPMHPHLNHLSSDVCRG 613
A HSQRC ++ +AR +E FY PHN+DFRGRAYP+ P+ N + +D CRG
Sbjct: 742 ADNKKMGNHSQRCYLNFQMEIARAYLNE-SFYLPHNMDFRGRAYPLPPYFNQMGADNCRG 800
Query: 614 VLEFAEGRPLGKSGLRWLKIHLANLFSGGVEKLSHDGRLAFVENHLYEIFDSAENPINGS 673
+L F+EGR LG+SGLRWL+IHL+N+F G +K S R F +H+ +I DSA N + G
Sbjct: 801 LLLFSEGRVLGESGLRWLRIHLSNVF--GFDKASFQEREQFSIDHVDDILDSANNGLKGR 858
Query: 674 RWWLTAEDPFQCLAACINLSEALKSSSPHSVISHLPIHQDGSCNGLQHYAALGRNTLEAA 733
RWWL A DPFQCLAAC+ L AL P +SHLP+HQDGSCNGLQHYAALG + + A
Sbjct: 859 RWWLKAADPFQCLAACVELKNALSLPDPTKYVSHLPVHQDGSCNGLQHYAALGGDAIGAR 918
Query: 734 AVNLVAGEKPADVYSEIAVRVHEIMKRDSNK-DPSKHPQALLAKILIDQVDRKLVKQTVM 792
VNL G++P+D+Y+ +A V + D+ DP +AK++ ++ RK+VKQTVM
Sbjct: 919 QVNLEPGDRPSDIYTAVAEHVKASIASDAKAGDP-------IAKLMDGKITRKVVKQTVM 971
Query: 793 TSVYGVTFVGAREQIKRRLEEK-GHITDDRQLFAAACYAAKVTLTALGEIFEAARSIMGW 851
T+VYGVTF+GA Q++R+LE+ + + ++ A + ++ +AL +F A I W
Sbjct: 972 TNVYGVTFIGATRQVRRQLEDHYPELAETDEISKCAVHVSRAIFSALNSMFSGAHDIQFW 1031
Query: 852 LGDCAKVIASE---------------------------NQPVRWTTPLGLPVVQPYCKNE 884
LGDCA I N V WTTPL LPVVQPY + +
Sbjct: 1032 LGDCANRITRSLNPSQIEEIRKELEAPSKTDIAKKLKFNNSVIWTTPLKLPVVQPYREAK 1091
Query: 885 RHLIRTSLQVLALQ--REGNLVKIRKQRTAFPPNFVHSLDGSHMMMTAVACRDAGLHFAG 942
I TSLQ+ ++ R N V RKQ AFPPNF+HSLD +HMM++A+ C + GL F+
Sbjct: 1092 TRQIPTSLQLCTIKDIRGANEVNRRKQLQAFPPNFIHSLDATHMMLSAIKCDELGLSFSA 1151
Query: 943 L 943
+
Sbjct: 1152 V 1152
>gi|307103643|gb|EFN51901.1| hypothetical protein CHLNCDRAFT_27382 [Chlorella variabilis]
Length = 599
Score = 474 bits (1220), Expect = e-131, Method: Compositional matrix adjust.
Identities = 240/523 (45%), Positives = 331/523 (63%), Gaps = 20/523 (3%)
Query: 440 YVPMLVPPKKWKGYNKGGYLFLPSYVMRTHGSRKQQEALKSVT-------GNCMKKVFEA 492
Y+PML+PP W N GG+L L + VMR GSR QQE L + G + +V++A
Sbjct: 9 YLPMLIPPVPWLRNNLGGHLTLRNTVMRIRGSRLQQEMLDAADQEWGEGRGPGLSRVYDA 68
Query: 493 LDTLGSTKWRVNKQVLSVLESIWVSGGNIAGLVDRNDVLIPE--KP--------LSEDMT 542
L++LGST W +N+ V V+E++W GG + + + ++ +P KP +
Sbjct: 69 LNSLGSTAWAINQDVFRVVETVWAWGGGVCDIPPKVNLPLPRDLKPGFRQHRHAPGQLQF 128
Query: 543 EVQKWKWSVRKAKKINQERHSQRCDTELKLSVARRMKDEEGFYYPHNLDFRGRAYPMHPH 602
++ + + + +K N+E HS RCD E KL++AR E FY+PHN+DFRGRAYPMHPH
Sbjct: 129 YLRTRRADISRMQKKNRELHSLRCDMEYKLAIAREFVKEPRFYFPHNVDFRGRAYPMHPH 188
Query: 603 LNHLSSDVCRGVLEFAEGRPLGKSGLRWLKIHLANLFSGGVEKLSHDGRLAFVENHLYEI 662
LNHL +D+ RG+L+FAEGRPLG+ GL WL + ANL+ GV+KL GR+ +VE+HL +I
Sbjct: 189 LNHLGADLSRGLLQFAEGRPLGEHGLFWLYVQAANLWGQGVDKLPLWGRVKWVEDHLAQI 248
Query: 663 FDSAENPINGSRWWLTAEDPFQCLAACINLSEALKSSSPHSVISHLPIHQDGSCNGLQHY 722
+ +W AE+PFQ L+ C + +A S P +SH+P+HQDGSCNGLQHY
Sbjct: 249 LMTTRGSHGQVAYWWQAENPFQFLSTCFEIHKANASGDPARFVSHVPVHQDGSCNGLQHY 308
Query: 723 AALGRNTLEAAAVNLVAGEKPADVYSEIAVRVHEIMKRDSNKDPSKHPQALLAKILIDQV 782
AALGR+ AVNL ++P R + ++ PS P L+ L +
Sbjct: 309 AALGRDFSGGHAVNLCPTDRPQAGGGARKPRTPDRACIHASNQPSNQPDLLMCHTLCAGL 368
Query: 783 DRKLVKQTVMTSVYGVTFVGAREQIKRRLEEKGHITDDRQLFAAACYAAKVTLTALGEIF 842
DRKLVKQTVMTSVYGVTFVGAR Q+ RL+E+G D++ ++ +CY AKVTL L E+F
Sbjct: 369 DRKLVKQTVMTSVYGVTFVGARAQVGNRLKERG-FEDNQFMYKVSCYTAKVTLECLHEMF 427
Query: 843 EAARSIMGWLGDCAKVIASENQPVRWTTPLGLPVVQPYCKNERHLIRTSLQVLALQREGN 902
++A+ M WL +CA++IA E V W TPLGLPVVQPY + +R +RT LQ L L +
Sbjct: 428 QSAKHTMHWLSECARLIAKEGHSVMWHTPLGLPVVQPYRRKDRQHVRTLLQRLVLVENND 487
Query: 903 LVKIRK--QRTAFPPNFVHSLDGSHMMMTAVACRDAGLHFAGL 943
+ I K QRTAFPPN++HS+D SHMM+TA+AC+ G+ FAG+
Sbjct: 488 DLPIMKQRQRTAFPPNYIHSIDSSHMMLTAIACQQEGIDFAGV 530
>gi|336379013|gb|EGO20169.1| hypothetical protein SERLADRAFT_363576 [Serpula lacrymans var.
lacrymans S7.9]
Length = 1134
Score = 474 bits (1220), Expect = e-130, Method: Compositional matrix adjust.
Identities = 281/741 (37%), Positives = 421/741 (56%), Gaps = 74/741 (9%)
Query: 248 APHIELLPADKVAVIVMHKMMGLVMAGHEDRCVQVVQAAVHIGMAIEQEIRIHSFLEKTK 307
P ++L+ K+++I + ++M L +G ++ +A + +G A+E E K +
Sbjct: 254 GPFLQLVKPSKLSLITILEIMRLNGSGGVSDGMKTARALLTVGRAVENEY-------KAQ 306
Query: 308 NYKRKKIIADTEEVLSKEKELLRKRVNSLIKSKRVMEAQKLLKNEE-TKPWGRDTQAKLG 366
KR I A + E + ++RV A+ + +EE T W + + ++G
Sbjct: 307 MCKRNNI-AIPSQSRPGEYGFFTGFGYRDLHARRVTAAKYTMDSEEWTTEWTQLLRVRVG 365
Query: 367 SRLVELLIETAYVQHPV--NPADYSPPDVRPAFRHRFKTILKHPGQKTTKRYGVVECDPL 424
S LV+ L++ A V + + +PAF H ++ + GQK GV+ +P+
Sbjct: 366 SILVDCLMDVATVTRTAIDKRTQETISEDQPAFYHAYEYVR---GQK----LGVIRLNPV 418
Query: 425 VLEGLDRSA-KHMLIP-YVPMLVPPKKWKGYNKGGYLFLPSYVMRTHGSRKQQEALK--S 480
V + + + + L P ++PMLV PK W Y++GGYL+ S MR S++QQ L+ S
Sbjct: 419 VADRIAKDGLRETLHPRHLPMLVKPKPWLNYDQGGYLYNKSSAMRFKDSQEQQSYLQHAS 478
Query: 481 VTGNCMKKVFEALDTLGSTKWRVNKQVLSVLESIWVSGGNIAGL----VDRNDVLIPEKP 536
GN ++ V+ LD LGST W++N+ V V+ ++W SG + L D+ + PEKP
Sbjct: 479 ELGN-VELVYAGLDVLGSTPWKINRNVFDVVLTVWNSGERLCKLPPSVFDQPE---PEKP 534
Query: 537 --LSEDMTEVQKWKWSVRKAKKINQERHSQRCDTELKLSVARRMKDEEGFYYPHNLDFRG 594
LS D+ + ++ + HS RC K+ +AR + Y PHNLDFRG
Sbjct: 535 DNLSMDIKAKSVYGQRLKAYMQAKANNHSDRCSVNYKIEIARAFLGDT-MYLPHNLDFRG 593
Query: 595 RAYPMHPHLNHLSSDVCRGVLEFAEGRPLGKSGLRWLKIHLANLFSGGVEKLSHDGRLAF 654
RAYP+ PHLNH+ D+ RG+L F E +PLG+ GLRWLKIHLANL+ G +K + D R+ +
Sbjct: 594 RAYPIPPHLNHIGDDLSRGLLMFGEAKPLGERGLRWLKIHLANLY--GFDKANFDERVEY 651
Query: 655 VENHLYEIFDSAENPINGSRWWLTAEDPFQCLAACINLSEALKSSSPHSVISHLPIHQDG 714
V L E++DSAE P+ G RWW A+DP+QCLA C+ L AL+S P + +S LP+HQDG
Sbjct: 652 VMERLDEVYDSAEKPLEGRRWWTKADDPWQCLATCMELRAALESEDPEAYMSSLPVHQDG 711
Query: 715 SCNGLQHYAALGRNTLEAAAVNLVAGEKPADVYSEIAVRVHEIMKRDSNKDPSKHPQALL 774
+CNGLQHYAALG + A VNL E+P+DVY+ +A V + D+ D
Sbjct: 712 TCNGLQHYAALGGDNRGAQQVNLSVTERPSDVYTYVANMVQRQLDEDAANDHK------Y 765
Query: 775 AKILIDQVDRKLVKQTVMTSVYGVTFVGAREQIKRRLEEKGHITDDRQLFAAACYAAKVT 834
AK+L +V RK+VKQTVMT+VYGVT++GAR+QI+R+L+++ I ++ + + AA Y AK T
Sbjct: 766 AKMLQGKVARKVVKQTVMTTVYGVTYIGARDQIERQLKDRKDIPEE-ECWNAAAYLAKKT 824
Query: 835 LTALGEIFEAARSIMGWLGDCAKVIA----SENQP------------------------- 865
L +G++F A++I WL CA+++A +E P
Sbjct: 825 LFCIGDLFSGAKAIQTWLNLCARLVAKSIPAERIPEALEAEKTKRRLPVSTNRIRKEQMT 884
Query: 866 -VRWTTPLGLPVVQPYCKNERHLIRTSLQVLALQREGNLVKIR--KQRTAFPPNFVHSLD 922
V WTTPLGLP+VQPY K +R I T+LQ + + ++ KQ +AFPPNF+HSLD
Sbjct: 885 SVVWTTPLGLPIVQPYRKVKRKQIMTALQTVYISDPNAPAEVNANKQASAFPPNFIHSLD 944
Query: 923 GSHMMMTAVACRDAGLHFAGL 943
+HMM+TA+ CR G+ FA +
Sbjct: 945 ATHMMLTALECRTQGVTFASV 965
>gi|336366344|gb|EGN94691.1| hypothetical protein SERLA73DRAFT_114135 [Serpula lacrymans var.
lacrymans S7.3]
Length = 986
Score = 474 bits (1220), Expect = e-130, Method: Compositional matrix adjust.
Identities = 285/759 (37%), Positives = 428/759 (56%), Gaps = 69/759 (9%)
Query: 227 LSEAIEREQKMQRTKKQKAAYAPHIELLPADKVAVIVMHKMMGLVMAGHEDRCVQVVQAA 286
+ E I E+K ++ + P ++L+ K+++I + ++M L +G ++ +A
Sbjct: 86 IQEIIVAEEKAD-SRGKGTNLGPFLQLVKPSKLSLITILEIMRLNGSGGVSDGMKTARAL 144
Query: 287 VHIGMAIEQEIRIHSFLEKTKNYKRKKIIADTEEVLSKEKELLRKRVNSLIKSKRVMEAQ 346
+ +G A+E E K + KR I A + E + ++RV A+
Sbjct: 145 LTVGRAVENEY-------KAQMCKRNNI-AIPSQSRPGEYGFFTGFGYRDLHARRVTAAK 196
Query: 347 KLLKNEE-TKPWGRDTQAKLGSRLVELLIETAYVQHPV--NPADYSPPDVRPAFRHRFKT 403
+ +EE T W + + ++GS LV+ L++ A V + + +PAF H ++
Sbjct: 197 YTMDSEEWTTEWTQLLRVRVGSILVDCLMDVATVTRTAIDKRTQETISEDQPAFYHAYEY 256
Query: 404 ILKHPGQKTTKRYGVVECDPLVLEGLDRSA-KHMLIP-YVPMLVPPKKWKGYNKGGYLFL 461
+ GQK GV+ +P+V + + + + L P ++PMLV PK W Y++GGYL+
Sbjct: 257 VR---GQK----LGVIRLNPVVADRIAKDGLRETLHPRHLPMLVKPKPWLNYDQGGYLYN 309
Query: 462 PSYVMRTHGSRKQQEALK--SVTGNCMKKVFEALDTLGSTKWRVNKQVLSVLESIWVSGG 519
S MR S++QQ L+ S GN ++ V+ LD LGST W++N+ V V+ ++W SG
Sbjct: 310 KSSAMRFKDSQEQQSYLQHASELGN-VELVYAGLDVLGSTPWKINRNVFDVVLTVWNSGE 368
Query: 520 NIAGLVDR-NDVLIPEKP--LSEDMTEVQKWKWSVRKAKKINQERHSQRCDTELKLSVAR 576
+ L D PEKP LS D+ + ++ + HS RC K+ +AR
Sbjct: 369 RLCKLPPSVFDQPEPEKPDNLSMDIKAKSVYGQRLKAYMQAKANNHSDRCSVNYKIEIAR 428
Query: 577 RMKDEEGFYYPHNLDFRGRAYPMHPHLNHLSSDVCRGVLEFAEGRPLGKSGLRWLKIHLA 636
+ Y PHNLDFRGRAYP+ PHLNH+ D+ RG+L F E +PLG+ GLRWLKIHLA
Sbjct: 429 AFLGDT-MYLPHNLDFRGRAYPIPPHLNHIGDDLSRGLLMFGEAKPLGERGLRWLKIHLA 487
Query: 637 NLFSGGVEKLSHDGRLAFVENHLYEIFDSAENPINGSRWWLTAEDPFQCLAACINLSEAL 696
NL+ G +K + D R+ +V L E++DSAE P+ G RWW A+DP+QCLA C+ L AL
Sbjct: 488 NLY--GFDKANFDERVEYVMERLDEVYDSAEKPLEGRRWWTKADDPWQCLATCMELRAAL 545
Query: 697 KSSSPHSVISHLPIHQDGSCNGLQHYAALGRNTLEAAAVNLVAGEKPADVYSEIAVRVHE 756
+S P + +S LP+HQDG+CNGLQHYAALG + A VNL E+P+DVY+ +A V
Sbjct: 546 ESEDPEAYMSSLPVHQDGTCNGLQHYAALGGDNRGAQQVNLSVTERPSDVYTYVANMVQR 605
Query: 757 IMKRDSNKDPSKHPQALLAKILIDQVDRKLVKQTVMTSVYGVTFVGAREQIKRRLEEKGH 816
+ D+ D AK+L +V RK+VKQTVMT+VYGVT++GAR+QI+R+L+++
Sbjct: 606 QLDEDAANDHK------YAKMLQGKVARKVVKQTVMTTVYGVTYIGARDQIERQLKDRKD 659
Query: 817 ITDDRQLFAAACYAAKVTLTALGEIFEAARSIMGWLGDCAKVIA----SENQP------- 865
I ++ + + AA Y AK TL +G++F A++I WL CA+++A +E P
Sbjct: 660 IPEE-ECWNAAAYLAKKTLFCIGDLFSGAKAIQTWLNLCARLVAKSIPAERIPEALEAEK 718
Query: 866 -------------------VRWTTPLGLPVVQPYCKNERHLIRTSLQVLALQREGNLVKI 906
V WTTPLGLP+VQPY K +R I T+LQ + + ++
Sbjct: 719 TKRRLPVSTNRIRKEQMTSVVWTTPLGLPIVQPYRKVKRKQIMTALQTVYISDPNAPAEV 778
Query: 907 R--KQRTAFPPNFVHSLDGSHMMMTAVACRDAGLHFAGL 943
KQ +AFPPNF+HSLD +HMM+TA+ CR G+ FA +
Sbjct: 779 NANKQASAFPPNFIHSLDATHMMLTALECRTQGVTFASV 817
>gi|443922649|gb|ELU42059.1| Rpo41p [Rhizoctonia solani AG-1 IA]
Length = 1371
Score = 474 bits (1219), Expect = e-130, Method: Compositional matrix adjust.
Identities = 291/753 (38%), Positives = 435/753 (57%), Gaps = 77/753 (10%)
Query: 244 KAAYAPHIELLPADKVAVIVMHKMMGLVMAGHEDRCVQVVQAAVHIGMAIEQE------- 296
K+ +P + LL K+A+I + ++M L G ++ +A + +G A+E E
Sbjct: 435 KSPLSPFLRLLDTSKLAMITILELMRLHGTGGVSEGMKTSRALIAVGRAVETECLAVWSK 494
Query: 297 ---IRIHSFLEKTKNYKRKK------------IIADTEEVLSKEKELLRKRVNSLIKSKR 341
+++ + ++ K +K II + S+ E + +++ +
Sbjct: 495 KRGVKLGDVVSAPRSMKTRKGKPPKAKPEVIEIIEEERTGTSRASENPEQLAEAVVDT-- 552
Query: 342 VMEAQKLLKNEETKP-WGRDTQAKLGSRLVELLIETAYVQ-HPVNPADYSPPDVRPAFRH 399
E+ + E + P W + + ++GS LV+ ++ +AY++ + N + + + +PAF H
Sbjct: 553 --ESPIVANMESSMPEWTQVVRVRVGSFLVDSVMNSAYIKRNGTNESGENLCEEQPAFMH 610
Query: 400 RFKTILKHPGQKTTKRYGVVECDPLVLEGLDRSA-KHMLIP-YVPMLVPPKKWKGYNKGG 457
++ + K+ GV++ +P+V E + R + L P ++PMLV P+ W+ Y+KGG
Sbjct: 611 SYEYV-------RGKKLGVIKLNPVVGEKMARDPIRETLHPRHLPMLVKPQPWEDYDKGG 663
Query: 458 YLFLPSYVMRTHGSRKQQEALK--SVTGNCMKKVFEALDTLGSTKWRVNKQVLSVLESIW 515
YL LP+ VMR S +Q LK S G+ + V+E LD LG T WR+N ++L+V+ +W
Sbjct: 664 YLKLPT-VMRIKDSPEQLSYLKHASAAGH-VDFVYECLDALGETPWRINDKILNVVLQVW 721
Query: 516 VSGGNIAGLVD-RNDVLIPEKPLSEDMTEVQKWKWSVRKAKKINQERHSQRCDTELKLSV 574
G +AG+ + D+ P KP +D + ++ + H +RC+ KL V
Sbjct: 722 NEGKGMAGIPPIQLDIEEPPKPEEDDPRARATYLLKLKSILTDKRNNHGERCNVNYKLEV 781
Query: 575 ARRMKDEEGFYYPHNLDFRGRAYPMHPHLNHLSSDVCRGVLEFAEGRPLGKSGLRWLKIH 634
AR + DE FY PHNLDFRGRAYP+ PHLNH+ D+CRG+L FAE RPLG+ GLRWLKIH
Sbjct: 782 ARFVNDE--FYMPHNLDFRGRAYPIPPHLNHIGDDLCRGLLLFAERRPLGERGLRWLKIH 839
Query: 635 LANLFSGGVEKLSHDGRLAFVENHLYEIFDSAENPINGSRWWLTAEDPFQCLAACINLSE 694
LAN+F G +K S D R+ FVE HL EI DSAENP+NG +WWL A+DP+QCL+ C+ L+E
Sbjct: 840 LANVF--GYDKASFDERVLFVEKHLEEIRDSAENPLNGKQWWLKADDPWQCLSTCMELTE 897
Query: 695 ALKSSSPHSVISHLPIHQDGSCNGLQHYAALGRNTLEAAAVNLVAGEKPADVYSEIAVRV 754
ALK P S+LP+HQDG+CNGLQHYAALG + A VNL G++PADVYS +A V
Sbjct: 898 ALKGPVPELYRSNLPVHQDGTCNGLQHYAALGGDAAGAQHVNLEQGDRPADVYSHVARMV 957
Query: 755 HEIMKRDSNKDPSKHPQALLAKILIDQVDRKLVKQTVMTSVYGVTFVGAREQIKRRLEEK 814
++ D+ + AK++ ++ RK+VKQTVMT+VYGVTF+GAR+QI+++L +
Sbjct: 958 DVVVDEDAALGIPE------AKVVQGKIARKVVKQTVMTTVYGVTFIGARDQIEKQLRDI 1011
Query: 815 GHITDDRQLFAAACYAAKVTLTALGEIFEAARSIMGWLGDCAKVIA----SENQP----- 865
++ + AA A L A+G++F A I WL A++IA S+ P
Sbjct: 1012 VGLSREESWPVAAYLAKTQVLGAIGDLFSGASQIQNWLSISARLIAKSIPSDRMPTVLSA 1071
Query: 866 ------------VRWTTPLGLPVVQPYCKNERHLIRTSLQVLALQREGNL---VKIRKQR 910
V WTT LGLP+VQPY K ++ I T+LQ + + + NL V KQ
Sbjct: 1072 TPREAARERMTSVIWTTALGLPIVQPYRKAKKKQILTALQSVFIS-DPNLPTQVDPVKQS 1130
Query: 911 TAFPPNFVHSLDGSHMMMTAVACRDAGLHFAGL 943
AFPPNFVHSLD +HMM+TA+ CR + + FA +
Sbjct: 1131 AAFPPNFVHSLDATHMMLTALECRASSITFASV 1163
>gi|392587510|gb|EIW76844.1| DNA/RNA polymerase [Coniophora puteana RWD-64-598 SS2]
Length = 1215
Score = 473 bits (1218), Expect = e-130, Method: Compositional matrix adjust.
Identities = 284/755 (37%), Positives = 416/755 (55%), Gaps = 77/755 (10%)
Query: 241 KKQKAAYAPHIELLPADKVAVIVMHKMMGLVMAGHEDRCVQVVQAAVHIGMAIEQEIRIH 300
+K P + L+ +K++++V+ ++M L +G ++ +A + +G A+E E
Sbjct: 312 RKPATQIGPFLSLIKPEKLSLLVILEVMRLSGSGGVLDGMKTARALLTVGRAVENEY--- 368
Query: 301 SFLEKTKNYKRKKIIADTEEVLSKEKELLRKRVNSLIKSKRVMEAQKLLKNEE-TKPWGR 359
K + K+ I S + +++ R+ A+ L +NEE T W +
Sbjct: 369 ----KAEMCKKNNIAVPQHTRFSGDVNFFSGNGYKALQAGRLAAAKYLEENEEWTSDWTQ 424
Query: 360 DTQAKLGSRLVELLIETAYVQHPV--NPADYSPPDVRPAFRHRFKTILKHPGQKTTKRYG 417
+ ++G LV+ L++ A ++ + +PAF H ++ + GQK G
Sbjct: 425 QLRVRIGGILVDCLMDVATIERQAVDKRTGEKISEQQPAFYHAYEYVR---GQK----LG 477
Query: 418 VVECDPLVLEGLDRSA-KHMLIP-YVPMLVPPKKWKGYNKGGYLFLPSYVMRTHGSRKQQ 475
V+ +P V E L + + L P ++PMLV PK W +GGY++ S MR S +QQ
Sbjct: 478 VIRINPFVAEHLAKDGMQGTLHPRHLPMLVQPKPWVNAEQGGYIYSKSSAMRYKDSIEQQ 537
Query: 476 EALK--SVTGNCMKKVFEALDTLGSTKWRVNKQVLSVLESIWVSGGNIAGLVDR-NDVLI 532
+ L+ S GNC + V+ LD LGST W+VN++V ++ +W SG + + DV
Sbjct: 538 KYLQHASALGNC-ELVYAGLDVLGSTPWKVNEKVFDIVLQVWNSGERLGKMPPAVFDVPE 596
Query: 533 PEKP--LSEDMTEVQKWKWSVRKAKKINQERHSQRCDTELKLSVARRMKDEEGFYYPHNL 590
PE+P + D+ + +R HS RC K+ VAR + Y PHNL
Sbjct: 597 PERPANVETDVKAKTVYGQRMRAWTNDKANAHSDRCSVNYKIEVARAFLGDT-MYLPHNL 655
Query: 591 DFRGRAYPMHPHLNHLSSDVCRGVLEFAEGRPLGKSGLRWLKIHLANLFSGGVEKLSHDG 650
DFRGRAYP+ PHLNHL D+ RG+L FA+G+PLG GLRWLKIH+ANL+ G +K + D
Sbjct: 656 DFRGRAYPIPPHLNHLGDDLSRGLLRFAKGKPLGVRGLRWLKIHIANLY--GFDKANFDE 713
Query: 651 RLAFVENHLYEIFDSAENPINGSRWWLTAEDPFQCLAACINLSEALKSSSPHSVISHLPI 710
R F +L EI+DSAENP+ G RWW+ A+DP+QCL ACI L AL + P + +SHLP+
Sbjct: 714 REEFAMKYLEEIYDSAENPLTGKRWWMKADDPWQCLGACIELKAALDAPEPTAYVSHLPV 773
Query: 711 HQDGSCNGLQHYAALGRNTLEAAAVNLVAGEKPADVYSEIAVRVHEIMKRDSNKDPSKHP 770
HQDG+CNGLQHYAALG + AA VNL ++P+DVY+ +A V + D K KH
Sbjct: 774 HQDGTCNGLQHYAALGGDQQGAAQVNLAVTDRPSDVYTHVAKMVERRLAEDCVKG-EKHA 832
Query: 771 QALLAKILIDQVDRKLVKQTVMTSVYGVTFVGAREQIKRRLEEKGHITDDRQLFAAACYA 830
+ LL KI RK+VKQTVMT+VYGVTFVGAR+QI+R+L ++ I ++ AAA Y
Sbjct: 833 ELLLGKIT-----RKVVKQTVMTTVYGVTFVGARDQIERQLSDRKDIPEEACW-AAAAYL 886
Query: 831 AKVTLTALGEIFEAARSIMGWLGDCAKVIA------------------------------ 860
A +TL +G++F A++I WL CA++I+
Sbjct: 887 AHITLNCIGDLFSGAKAIQNWLNLCARLISKSIPAERVASALEAPKARKGKGAKALAEGG 946
Query: 861 ----------SENQPVRWTTPLGLPVVQPYCKNERHLIRTSLQVLALQREGNLVKIR--K 908
+ V WTTPLGLP+VQPY K+++ I TSLQ + + ++ K
Sbjct: 947 NGGANNRIKNEQMTSVVWTTPLGLPIVQPYRKDKKKQIITSLQTVFISDPNTPAEVNTMK 1006
Query: 909 QRTAFPPNFVHSLDGSHMMMTAVACRDAGLHFAGL 943
Q +AFPPNF+HSLD +HMM+TA+ CR + FA +
Sbjct: 1007 QASAFPPNFIHSLDATHMMLTALECRKQDITFASV 1041
>gi|301106056|ref|XP_002902111.1| DNA-dependent RNA polymerase, putative [Phytophthora infestans T30-4]
gi|262098731|gb|EEY56783.1| DNA-dependent RNA polymerase, putative [Phytophthora infestans T30-4]
Length = 1070
Score = 473 bits (1216), Expect = e-130, Method: Compositional matrix adjust.
Identities = 308/889 (34%), Positives = 449/889 (50%), Gaps = 166/889 (18%)
Query: 176 NLLRR--RQVKQETEAWERMVDEYKELEAKMIEKRLAPNLPHIKGLFLGWFGPLSEAIER 233
N+ RR RQ++ E +E +D+Y K+ + + + K L W + IE
Sbjct: 158 NMRRRYARQLRLECSVYEMAMDKYSASHDKVRQLGRSTSTNAAKDLITKWMPQAQKYIES 217
Query: 234 EQKMQRTKKQKA---AYAPHIELLPADKVAVIVMHKMMGLVMAGHEDRCVQVVQAAVHIG 290
EQK ++ Y P + LL D +A I M+ M+ + + E + + ++ A+ +G
Sbjct: 218 EQKKIKSGTHSTDSNIYGPALMLLRHDILAAIGMNIMLNMCLM--ESKGPKFIKLALAMG 275
Query: 291 MAIEQEIRIHSFLEKTKNYKRKKIIADTEEVLSKEKELLRKRVNSLIKSKRVMEAQKLLK 350
A++ EE++SK KE + KR K ++ K +K
Sbjct: 276 KAVQ------------------------EEIISK-KETISKRYQD--DDKFYLQVSKNIK 308
Query: 351 NEETK-----------PWGRDTQAKLGSRLVELLIETAYVQHPVNPADYSPPDV------ 393
E K W + Q K+G+ +V+ + T YV P + S P++
Sbjct: 309 LESLKMRMKEYVDSVGGWDKRLQLKVGAAVVDCIQRTCYV--PNEYGEVSTPELCAAKGL 366
Query: 394 ---RPAFRHRFKTILKHPGQKTTKRYGVVE-----CDPLVLEGLDRSAKHMLIPYVPMLV 445
PAF H + +R GV++ D ++ D + Y+PMLV
Sbjct: 367 PPPEPAFIHNYVF-------DRNRRAGVIQIHQRMADTVLATNPDANVLPWTARYLPMLV 419
Query: 446 PPKKWKGYNKGGYLFLPSYVMRTHGSRKQQEALKSVTGNCMKKVFEALDTLGSTKWRVNK 505
PP+ W GGYL L + +MR S Q + ++ M + +AL+ + W +NK
Sbjct: 420 PPRPWTSVINGGYLKLRTKIMRQRDSAWQMDCVQR---GEMDGILKALNLMAEVPWVINK 476
Query: 506 QVLSVLESIWVSGGNIAGLVDRNDVLIPE------------------------------- 534
+VL V+ IW GGN L R DV +P+
Sbjct: 477 EVLDVVLQIWEDGGNFGDLPTRTDVPLPDPDSPEFADDPALYHKNVRKNQAHMMTISTSC 536
Query: 535 -----KPLSEDMTEVQKW------------KWSVRKAKKINQERHSQRCDTELKLSVARR 577
+S EV W +WS+ +++N+E HS RCDT KL VA
Sbjct: 537 GFKLIATVSGHCLEVVGWIFLSLEPSERLLRWSL--IEQLNREFHSLRCDTLYKLQVAEE 594
Query: 578 MKDEEGFYYPHNLDFRGRAYPMHPHLNHLSSDVCRGVLEFAEGRPLGKSGLRWLKIHLAN 637
KDE YYP+N+DFRGR YP+ P+LNHL SD+ R +L F + +PLG+ GLRW+KIHLAN
Sbjct: 595 FKDEPELYYPYNMDFRGRVYPIPPNLNHLGSDLSRSLLIFRDRKPLGERGLRWMKIHLAN 654
Query: 638 LFSGGVEKLSHDGRLAFVENHLYEIFDSAENPI--NGSRWWLTAEDPFQCLAACINLSEA 695
+F GV+K S D R+ F + HL ++ SA +P+ WW A+ PF L C L A
Sbjct: 655 VF--GVDKCSFDERVEFADAHLDKVVASASDPLGEGDCAWWKGADYPFLALGVCFELKRA 712
Query: 696 LKSSSPHSVISHLPIHQDGSCNGLQHYAALGRNTLEAAAVNLVAGEKPADVYSEIAVRVH 755
++S P +S++PIHQDGSCNGLQHYAALGR+ A VNLV ++P+DVY +A +V
Sbjct: 713 IESPDPTQYMSNIPIHQDGSCNGLQHYAALGRDHSGGAQVNLVPADRPSDVYMGVATQVM 772
Query: 756 EIMKRDSNKD-PS-KHPQALLAKI-----------------LIDQ-------------VD 783
++RD+ + P+ + +A+LA + L+DQ +
Sbjct: 773 AKVERDAALEVPTVEEVRAMLAAVPDDESTESLSRRTKFRTLLDQAHRKKYAQFLDGIIT 832
Query: 784 RKLVKQTVMTSVYGVTFVGAREQIKRRLEE----KGHITDDR---QLFAAACYAAKVTLT 836
RK+VKQTVMTSVYGVT++GAR+QI RL E KGHI DD+ ++ A+CY A++T+
Sbjct: 833 RKVVKQTVMTSVYGVTYIGARKQISARLHETFLTKGHIMDDKLEDNIYHASCYCAELTMG 892
Query: 837 ALGEIFEAARSIMGWLGDCAKVIASENQPVRWTTPLGLPVVQPYCKNERHLIRTSLQ-VL 895
++G++F +AR IMGWL CA + QP+ W TPLGLPVVQPY +RT +Q VL
Sbjct: 893 SMGDLFTSARGIMGWLARCAGKVGESGQPMSWITPLGLPVVQPYRSKSTKQVRTKVQHVL 952
Query: 896 ALQREGNLVKIRKQRTAFPPNFVHSLDGSHMMMTAVAC-RDAGLHFAGL 943
+ EG V I +Q++AFPPNFVHSLD +HMM+TA C D + FA +
Sbjct: 953 MVDNEGRPVSIGRQKSAFPPNFVHSLDSTHMMLTARRCLEDEQISFAAV 1001
>gi|410077803|ref|XP_003956483.1| hypothetical protein KAFR_0C03560 [Kazachstania africana CBS 2517]
gi|372463067|emb|CCF57348.1| hypothetical protein KAFR_0C03560 [Kazachstania africana CBS 2517]
Length = 1284
Score = 472 bits (1215), Expect = e-130, Method: Compositional matrix adjust.
Identities = 280/739 (37%), Positives = 414/739 (56%), Gaps = 60/739 (8%)
Query: 234 EQKMQRTKKQKAAYAPHIELLPADKVAVIVMHKMMGLVMAGHEDRCVQVVQAAVHIGMAI 293
++++ + ++ YAP++ L+ +K+ VI + +++ L G ++ +A + +G AI
Sbjct: 415 KERLPKADSKRLEYAPYLALVNPEKMCVIAILEILKLNSTGGIIEGMRTARALISVGKAI 474
Query: 294 EQEIRIHSFLEKTKNYKRKKIIADTEEVLSKEKELLRKRVNSLIKSKRVMEAQKLLKNEE 353
E E R L K ++Y I D + + K LRK S SK +E K++
Sbjct: 475 EMEFRSEQLL-KNESY----IFKDVNKKSPEFKTYLRKAKKSFRSSK--IEQAKIV---- 523
Query: 354 TKPWGRDTQAKLGSRLVELLIETAYVQ-HPVNPADYSPP-DVRPAFRHRFKTILKHPGQK 411
W + +AK+GS LV +LI A V+ ++P + PAF H ++ H G K
Sbjct: 524 ---WPQSIRAKVGSILVSILIHVAKVEIEGIDPITHQKIFGTAPAFSHSYQY---HNGSK 577
Query: 412 TTKRYGVVECDPLVLEGLD--RSAKHMLIPYVPMLVPPKKWKGYNKGGYLFLPSYVMRTH 469
GV+ +++ LD R + +PMLV P+ W + GGY + S ++R+
Sbjct: 578 ----LGVIRIHKSLVQQLDGERLMASVQPQLLPMLVEPRPWVNWKSGGYYYTQSTLVRSK 633
Query: 470 GSRKQQEALKSVTG-NCMKKVFEALDTLGSTKWRVNKQVLSVLESIWVSGGN---IAGLV 525
S +Q L++ + + KV++ L+ LG T W VN+++ ++ +W GG+ I G+
Sbjct: 634 DSPEQIAYLEAASNVQALDKVYDGLNVLGDTAWTVNRRIFEIISKVWNKGGSFLEIPGIQ 693
Query: 526 DRNDVLIPEKPLSEDMTEVQKWKWSVRKAKKINQERHSQRCDTELKLSVARRMKDEEGFY 585
++ L P P + D + + +WK + S RCD KL +AR E FY
Sbjct: 694 QESEFL-PPPPKNADPSVINEWKNKNKILANKYSSNRSMRCDLNYKLEIARAFLGER-FY 751
Query: 586 YPHNLDFRGRAYPMHPHLNHLSSDVCRGVLEFAEGRPLGKSGLRWLKIHLANLFSGGVEK 645
+PHNLDFRGRAYP+ PH NHL +D+ RG+L F +G+ LGK GL WLK+HL+NL+ GV+K
Sbjct: 752 FPHNLDFRGRAYPLSPHFNHLGNDMSRGLLIFWKGKRLGKEGLSWLKVHLSNLY--GVDK 809
Query: 646 LSHDGRLAFVENHLYEIFDSAENPINGSR-WWLTAEDPFQCLAACINLSEALKSSSPHSV 704
+ R F+++HL EI DSAENP+NG WW A+ P+Q LA CI L+EALK +P
Sbjct: 810 VPLLERENFIDDHLEEIKDSAENPLNGKYLWWQKADKPWQALATCIELNEALKLENPEDF 869
Query: 705 ISHLPIHQDGSCNGLQHYAALGRNTLEAAAVNLVAGEKPADVYSEIAVRVHEIMKRDSNK 764
ISH P+HQDG+CNGLQHYAALG + A VNLV GEKP DVY+ +A V ++ K
Sbjct: 870 ISHQPVHQDGTCNGLQHYAALGGDIEGAQQVNLVPGEKPNDVYAHVAKIVQGKLRETLQK 929
Query: 765 DPSKHPQALLAKILIDQVDRKLVKQTVMTSVYGVTFVGAREQIKRRLEEKGHITDDRQLF 824
DP+ +AK L+D+++RK+VKQTVMT VYGVT +GA QI ++L + + D +
Sbjct: 930 DPNDE----MAKFLVDKLNRKVVKQTVMTHVYGVTLLGATLQIDKQLNDLFDDSSDSMKY 985
Query: 825 AAACYAAKVTLTALGEIFEAARSIMGWLGDCAKVIASE-------------NQP-----V 866
+ Y A+ A+ E FE A I WLG C+K ++ N+P V
Sbjct: 986 SK--YLARHVFAAIRESFEGAHLIQDWLGVCSKKLSKSIRLDVDEKSFKNGNKPEFMTSV 1043
Query: 867 RWTTPLGLPVVQPYCKNERHLIRTSLQVLALQR--EGNLVKIRKQRTAFPPNFVHSLDGS 924
WTTPLGLP+VQPY + + I T+LQ + + N V R+Q+ FPPNF+HSLD S
Sbjct: 1044 IWTTPLGLPIVQPYRQLSKKQIETNLQSVFISDPFAVNQVNARRQKAGFPPNFIHSLDAS 1103
Query: 925 HMMMTAVACRDAGLHFAGL 943
HM+++A C GL FA +
Sbjct: 1104 HMLLSASECHKDGLVFASV 1122
>gi|389743216|gb|EIM84401.1| DNA/RNA polymerase [Stereum hirsutum FP-91666 SS1]
Length = 1355
Score = 472 bits (1215), Expect = e-130, Method: Compositional matrix adjust.
Identities = 290/747 (38%), Positives = 428/747 (57%), Gaps = 82/747 (10%)
Query: 248 APHIELLPADKVAVIVMHKMMGLVMAGHEDRCVQVVQAAVHIGMAIEQEIRIHSFLEKTK 307
P + LL +K+++IV+ ++M L +G ++ +A + +GMA+E E K +
Sbjct: 392 GPFLSLLKPEKLSLIVILEVMRLQSSGGISGGMKTTRALLSVGMAVEHEY-------KAE 444
Query: 308 NYKRKKIIADTEEVLSKEKE-LLRKRVNSLIKSKRVMEAQKLLKNEE-TKPWGRDTQAKL 365
K+ KI T V ++E K + + ++RV + + EE T W + + K+
Sbjct: 445 MCKKNKIQMPT--VGTRETSGFFSKFSYNDLHARRVTARRYMEDGEEWTSQWTQPVRIKV 502
Query: 366 GSRLVELLIETAYVQH----PVNPADYSPPDVRPAFRHRFKTILKHPGQKTTKRYGVVEC 421
GS LV+ L+E A V+ P NP + + +PAF H ++ I + + GV++
Sbjct: 503 GSFLVDRLMECAMVERTAPDPKNPGNILREE-QPAFFHSYEYIRGN-------KLGVLKL 554
Query: 422 DPLVLEGLDRSA-KHMLIP-YVPMLVPPKKWKGYNKGGYLFLPSYVMRTHGSRKQQEALK 479
+ +V E L R + L P ++PMLV PK W YN GGY++ S VMR S++Q+ LK
Sbjct: 555 NQVVQEKLGRDGVRETLHPRHLPMLVKPKPWLNYNDGGYIYNKSLVMRFKESKEQETYLK 614
Query: 480 SVTG-NCMKKVFEALDTLGSTKWRVNKQVLSVLESIWVSGGNIAGLVDRN-DVLIPEKPL 537
+G ++ V+ LD LGST W++N+ V V+ +W SG + + + PE+P
Sbjct: 615 HASGVGNVELVYAGLDVLGSTPWKINRGVFDVVLEVWNSGKGLCKVPSAAFEEPEPERPA 674
Query: 538 SEDMTEVQK--WKWSVRKAKKINQERHSQRCDTELKLSVARRMKDEEGFYYPHNLDFRGR 595
+ ++ + + + +R + HS RC K+ +AR + FY PHNLDFRGR
Sbjct: 675 NMEVDQNGRTIYLTRLRAWTQAKANHHSDRCSVNYKIEIARAFIGDT-FYLPHNLDFRGR 733
Query: 596 AYPMHPHLNHLSSDVCRGVLEFAEGRPLGKSGLRWLKIHLANLFSGGVEKLSHDGRLAFV 655
AYP+ PHLNH+ +D+ RG+L F E +PLG GLRWLKIHLANL+ G +K + D R+ FV
Sbjct: 734 AYPLPPHLNHIGNDLSRGLLLFGESKPLGARGLRWLKIHLANLY--GYDKATFDERVEFV 791
Query: 656 ENHLYEIFDSAENPINGSRWWLTAEDPFQCLAACINLSEALKSSSPHSVISHLPIHQDGS 715
L EI+DSA+NP+ G RWW+ A+DP+QCLA C L AL S P + LP+HQDG+
Sbjct: 792 HERLDEIYDSADNPLTGRRWWIQADDPWQCLATCKELKAALTSPEPEAYECSLPVHQDGT 851
Query: 716 CNGLQHYAALGRNTLEAAAVNLVAGEKPADVYSEIAVRVHEIMKRD---SNKDPSKHPQA 772
CNGLQHYAALG + A VNL ++P+DVY+ +A V +++K D N+
Sbjct: 852 CNGLQHYAALGGDAAGARQVNLDVADRPSDVYTYVANMVEDLLKADVVAGNR-------- 903
Query: 773 LLAKILIDQVDRKLVKQTVMTSVYGVTFVGAREQIKRRLEEKGHITDDRQLFAAACYAAK 832
A++L +V RK+VKQTVMT+VYGVTF+GAREQI+++L++ ++ + + AA Y AK
Sbjct: 904 -FAQMLSGRVARKVVKQTVMTTVYGVTFIGAREQIEKQLKDSPYVPKE-DAYMAAAYLAK 961
Query: 833 VTLTALGEIFEAARSIMGWLGDCAKVIA---------SENQP------------------ 865
+ A+G++F A+SIM WL A++IA + QP
Sbjct: 962 KVMLAIGDLFSGAQSIMNWLTLSARLIAKSVPEDRLNAAMQPYEPKFKSKKNAAVATRLQ 1021
Query: 866 ------VRWTTPLGLPVVQPYCKNERHLIRTSLQVLALQREGNL---VKIRKQRTAFPPN 916
V WTTPLGLP+VQPY K +R I TSLQ + + + N+ V KQ TAFPPN
Sbjct: 1022 KEQMTSVVWTTPLGLPIVQPYRKIKRKQIMTSLQTVFIS-DPNVPASVDSNKQATAFPPN 1080
Query: 917 FVHSLDGSHMMMTAVACRDAGLHFAGL 943
F+HSLD +HM++TA+ CR GL FA +
Sbjct: 1081 FIHSLDATHMLLTALECRTQGLAFASV 1107
>gi|403216073|emb|CCK70571.1| hypothetical protein KNAG_0E03120 [Kazachstania naganishii CBS 8797]
Length = 1276
Score = 472 bits (1214), Expect = e-130, Method: Compositional matrix adjust.
Identities = 291/817 (35%), Positives = 440/817 (53%), Gaps = 80/817 (9%)
Query: 164 LQEYREMKKRKFNLLRRRQVKQETEAWERMVDEYKELEAKMIEKRLAPNLPHIKGLFLGW 223
+ E+ + ++R L R E W+ ++ K+ I+K L L + G
Sbjct: 340 INEFNQDRQRALEL---RATDAAKERWKHDFEDAKQRGDLAIQKSLNAKLWK---WYSGM 393
Query: 224 FGPLSEAIEREQKMQRTKKQ----KAAYAPHIELLPADKVAVIVMHKMMGLVMAGHEDRC 279
L + IE ++MQ T + +A YAP++ L+ +K+ VI + +++ L G
Sbjct: 394 LPILKKEIELCRQMQATAAKGHSTRAEYAPYLTLVTPEKMCVITILEILKLNSTGGITEG 453
Query: 280 VQVVQAAVHIGMAIEQEIRIHSFLEKTKNYKRKKIIADTEEVLSKEKELLRKRVNSLIKS 339
++ +A + +G A+E E R L KN R +EV +K+ +K V S +
Sbjct: 454 MRTARAVISVGQAVEMEFRSEQLL---KNESRM-----FKEV-NKKSNTFKKIVRSAKSA 504
Query: 340 KRVMEA--QKLLKNEETKPWGRDTQAKLGSRLVELLIETAYVQ----HPVNPADYSPPDV 393
R ME QKLL W + +AK+GS LV +LI A V P+
Sbjct: 505 FRAMEIEKQKLL-------WPQAIRAKVGSILVSMLIRIADVTVEGTDPITKEKVYGK-- 555
Query: 394 RPAFRHRFKTILKHPGQKTTKRYGVVECDPLVLEGLD--RSAKHMLIPYVPMLVPPKKWK 451
PAF H ++ H G K G+V+ ++ L+ R + +PMLV P++WK
Sbjct: 556 TPAFSHSYQY---HNGVK----LGIVKIHKSLINQLNGERLVASVQPQLLPMLVKPREWK 608
Query: 452 GYNKGGYLFLPSYVMRTHGSRKQQEALKSVTG-NCMKKVFEALDTLGSTKWRVNKQVLSV 510
+ GGY + S ++R+ +Q L++ + N + KV++ L+ LG+T W VN+ + +V
Sbjct: 609 NWKSGGYFYSQSTLVRSRDCPEQLAYLEAASNSNAIDKVYDGLNVLGNTAWTVNRNIFNV 668
Query: 511 LESIWVSGGNIAGLVDRNDVL--IPEKPLSEDMTEVQKWKWSVRKAKKINQERHSQRCDT 568
+ +W G + ++L +P P D + +W+ R S RCD
Sbjct: 669 VSKVWNEGKPFLEIPGTQEILELLPPPPKGSDPAVINEWRTKNRYLSNEYSANRSMRCDL 728
Query: 569 ELKLSVARRMKDEEGFYYPHNLDFRGRAYPMHPHLNHLSSDVCRGVLEFAEGRPLGKSGL 628
KL +AR E+ FY+PHN+DFRGRAYP+ PH NHL +D+ RG+L F +G+ LG GL
Sbjct: 729 NYKLEIARAFLGEK-FYFPHNVDFRGRAYPLSPHFNHLGNDMSRGLLIFWKGKKLGSLGL 787
Query: 629 RWLKIHLANLFSGGVEKLSHDGRLAFVENHLYEIFDSAENPINGSRWWLTAEDPFQCLAA 688
+WLK+HL+NL+ GV+K+S D R+AF+E+ L E+ DSAE+P+NG WW A+ P+Q LA
Sbjct: 788 KWLKVHLSNLY--GVDKVSLDDRVAFIESQLDEVKDSAEDPLNGRGWWKKADKPWQALAT 845
Query: 689 CINLSEALKSSSPHSVISHLPIHQDGSCNGLQHYAALGRNTLEAAAVNLVAGEKPADVYS 748
C+ L+EALK +P +SH P+HQDG+CNGLQHYAALG + A VNL+ G P DVYS
Sbjct: 846 CMELNEALKLDNPEDFVSHQPVHQDGTCNGLQHYAALGGDMEGAEQVNLIPGAMPKDVYS 905
Query: 749 EIA--VRVHEIMKRDSNKDPSKHPQALLAKILIDQVDRKLVKQTVMTSVYGVTFVGAREQ 806
+A VR + + DP +AK L+D+++RK+VKQTVMT VYGVT VGA Q
Sbjct: 906 HVANIVRSRLQVLVEQENDP-------MAKFLVDKLNRKVVKQTVMTHVYGVTLVGATLQ 958
Query: 807 IKRRLEEKGHITDDRQLFAAACYAAKVTLTALGEIFEAARSIMGWLGDCAKVIASENQ-- 864
I +++ + + +D R+ + Y AK A+ E F+ A I WLG+C K I+ +
Sbjct: 959 IDKQIGD--YFSDHRESLKYSKYLAKHVFAAIRESFKGAHLIQDWLGECCKRISKSVRLD 1016
Query: 865 ----------------PVRWTTPLGLPVVQPYCKNERHLIRTSLQVLALQR--EGNLVKI 906
+ WTTPLGLP+VQPY + + + T+LQ + + N +
Sbjct: 1017 VDEKSFKNGDKLDFMTSIIWTTPLGLPIVQPYREVSKKQVDTNLQTVFISDPFAVNQINA 1076
Query: 907 RKQRTAFPPNFVHSLDGSHMMMTAVACRDAGLHFAGL 943
R+Q+ FPPNF+HSLD SHM+++A C + GL FA +
Sbjct: 1077 RRQKAGFPPNFIHSLDASHMLLSASKCAEEGLDFASV 1113
>gi|388578906|gb|EIM19238.1| DNA/RNA polymerase [Wallemia sebi CBS 633.66]
Length = 1136
Score = 471 bits (1213), Expect = e-130, Method: Compositional matrix adjust.
Identities = 298/853 (34%), Positives = 461/853 (54%), Gaps = 111/853 (13%)
Query: 181 RQVKQETEAWE----RMVDEYKELEAKMIEKRLAPNLPHIKGLFLGWFGPLSEAIER--- 233
RQ E A+E R E ELE + L+ + ++ L W+ +S I+
Sbjct: 145 RQRLLEESAYETAKARFEHEMNELEKAGVSTALSGH--PLQKLMWDWWKKVSVDIQAKLQ 202
Query: 234 ---EQKMQRTKKQK--AAYAPHIELLPADKVAVIVMHKMMGLVMAGHEDRCVQVVQAAVH 288
E +TK++K P + LL ++K+++I + +++ L G ++ +A +
Sbjct: 203 KSMETTNPKTKEEKFMNEITPFLSLLSSEKMSLITVLEILRLSGTGGIAEGMKTTRALLS 262
Query: 289 IGMAIEQEIRIHSFLEKTKNYKRKKIIADTEEVLSK---------EKELLRKRV------ 333
+G A+E E L++ K + AD ++V K EKEL K
Sbjct: 263 VGKAVENEHHAE-ILKQKHGISLKGVEADAKQVKRKLRYFDHRKAEKELDLKSPEFTGLI 321
Query: 334 -NSLIKSKRVMEA---------------QKLLKNEETKPWGRDTQAKLGSRLVELLIETA 377
+++ S++ EA ++ + T W + + K+GS LV+ L+E A
Sbjct: 322 DDAMGTSEQSPEAHSHDIASERAKARVVEERMNKAWTPNWSQIIRIKVGSFLVDSLMECA 381
Query: 378 YV----QHPVNPADYSPPDVRPAFRHRFKTILKHPGQKTTKRYGVVECDPLVLEGLDRSA 433
+ +HP + + + + +PAF ++ + K+ GV++ + V + LD+
Sbjct: 382 TITRTAKHPESGEEMT--EAQPAFSQSYQYV-------RGKKLGVIKVNTAVADRLDKDP 432
Query: 434 KHMLI--PYVPMLVPPKKWKGYNKGGYLFLPSYVMRTHGSRKQQE-ALKSVTGNCMKKVF 490
I ++PMLV PK W Y+ GGYLF + MR S +QQ LK+ + M+ V
Sbjct: 433 LGSTIHPRHLPMLVKPKPWLRYDSGGYLFHKNSAMRFKDSNEQQSYILKASSEGTMEPVL 492
Query: 491 EALDTLGSTKWRVNKQVLSVLESIWVSGGNIAGLVD-RNDVLIPEKPLSEDMTEVQKWKW 549
LD LG+T W +N++V +V++ W +G +A + P KP + + ++ +
Sbjct: 493 AGLDVLGATPWNINRKVFNVVKEAWNTGEGLAKIPPATTKTPDPVKPANYAIDPKERSNY 552
Query: 550 SVRKAKKINQER--HSQRCDTELKLSVARRMKDEEGFYYPHNLDFRGRAYPMHPHLNHLS 607
+N+ R HS RCDT KL +AR +E FY+PH LDFRGRAYP+ PHLNH+
Sbjct: 553 LQSMKAVVNERRNNHSIRCDTNYKLEIARAFLNET-FYFPHTLDFRGRAYPIPPHLNHIG 611
Query: 608 SDVCRGVLEFAEGRPLGKSGLRWLKIHLANLFSGGVEKLSHDGRLAFVENHLYEIFDSAE 667
D+ RG+L FAE RPLG+ G+RWLKIHLAN++ G +K S + R F + H+ EI+DSA+
Sbjct: 612 DDLSRGLLIFAEKRPLGEKGMRWLKIHLANVY--GYDKASFNEREQFADEHMEEIYDSAD 669
Query: 668 NPINGSRWWLTAEDPFQCLAACINLSEALKSSSPHSVISHLPIHQDGSCNGLQHYAALGR 727
NP+NG +WWL A+DP+QCLAAC + A+ S +P + S LP+HQDG+CNGLQHYAALG
Sbjct: 670 NPLNGRKWWLKADDPWQCLAACYEIQAAMLSPNPLAYESALPVHQDGTCNGLQHYAALGG 729
Query: 728 NTLEAAAVNLVAGEKPADVYSEIAVRVHEIMKRDSNKDPSKHPQALLAKILIDQVDRKLV 787
+ + A VNL G++P+DVY+ +A V E +K+D+ + ++ AKIL ++ RK+V
Sbjct: 730 DPMGAKQVNLEQGDRPSDVYTAVADLVIEDIKKDALESDNE-----FAKILEGKITRKVV 784
Query: 788 KQTVMTSVYGVTFVGAREQIKRRLEEKGHITDDRQLFAAACYAAKVTLTALGEIFEAARS 847
KQTVMT+VYGVTF+GAR+QI ++L+++G I D+ ++ A Y AK L ++G++F A +
Sbjct: 785 KQTVMTTVYGVTFIGARDQIDKQLQDRGDIPQDK-VYTTASYLAKKVLRSIGDLFAGANA 843
Query: 848 IMGWLGDCAKVIASENQPVR-----------------------------------WTTPL 872
I WL A+ IA P R WTTPL
Sbjct: 844 IQKWLSMSARYIAKSIPPERLIRALEPLEAKRKNSPANKGNVSTRTAKEQMTSVIWTTPL 903
Query: 873 GLPVVQPYCKNERHLIRTSLQVLALQREGNLVKIR--KQRTAFPPNFVHSLDGSHMMMTA 930
GLP+VQPY K ++ + T LQ + L ++ KQ +AFPPNF+HSLD +HM++TA
Sbjct: 904 GLPIVQPYRKAKKKQVATLLQSVYLADPNIPTEVNPIKQASAFPPNFIHSLDATHMVLTA 963
Query: 931 VACRDAGLHFAGL 943
+ C G+ +A +
Sbjct: 964 LQCSQIGITYASV 976
>gi|172490|gb|AAA35007.1| mitochondrial RNA polymerase [Saccharomyces cerevisiae]
Length = 1351
Score = 471 bits (1213), Expect = e-130, Method: Compositional matrix adjust.
Identities = 300/817 (36%), Positives = 433/817 (52%), Gaps = 97/817 (11%)
Query: 177 LLRRRQVKQETEAWERMVDEYKELEAKMIEKRLAPNL--------PHIKGLFLGWFGPLS 228
+L R + E W+ +E K IEK L L P +K LS
Sbjct: 418 VLENRATEAARERWKHDFEEAKARGDISIEKNLNVKLWKWYNEMLPLVKEEINHCRSLLS 477
Query: 229 EAIEREQKMQRTKKQKAAYAPHIELLPADKVAVIVMHKMMGLVMAGHEDRCVQVVQAAVH 288
E + ++ + + + Y P++ L+ K+ VI + +++ L G ++ +A +
Sbjct: 478 EKLSDKKSLNKVDTNRLGYGPYLTLIDPGKMCVITILELLKLNSTGGVIEGMRTARAVIS 537
Query: 289 IGMAIEQEIRIHSFLEKTKNYKRKKIIADTEEVLSKEKELLRKRVNSLIKSKRVMEAQKL 348
+G AIE E R +E+VL E + R VN K+ E +KL
Sbjct: 538 VGKAIEMEFR-------------------SEQVLKSESQAFRD-VN-----KKSPEFKKL 572
Query: 349 LKN----------EETKP-WGRDTQAKLGSRLVELLIETAYVQ----HPVNPADYSPPDV 393
++N E++K W + +A++GS L+ +LI+ A V PV A
Sbjct: 573 VQNAKSVFRSSQIEQSKILWPQSIRARIGSVLISMLIQVAKVSVQGVDPVTKAKVHGE-- 630
Query: 394 RPAFRHRFKTILKHPGQKTTKRYGVVECDPLVLEGLD--RSAKHMLIPYVPMLVPPKKWK 451
PAF H ++ H G K GV++ ++ L+ R + +PMLV PK W
Sbjct: 631 APAFAHGYQY---HNGSK----LGVLKIHKTLIRQLNGERLIASVQPQLLPMLVEPKPWV 683
Query: 452 GYNKGGYLFLPSYVMRTHGSRKQQEALKSVTGNC-MKKVFEALDTLGSTKWRVNKQVLSV 510
+ GGY + S ++RT S +Q LK+ + N + +V++ L+ LG T W VN++V V
Sbjct: 684 NWRSGGYHYTQSTLLRTKDSPEQVAYLKAASDNGDIDRVYDGLNVLGRTPWTVNRKVFDV 743
Query: 511 LESIWVSGGNIAGLVDRND--VLIPEKPLSEDMTEVQKWKWSVRK-AKKINQERHSQRCD 567
+ +W G + D VL P P + D + ++ WK V+ A K + +R S RCD
Sbjct: 744 VSQVWNKGEGFLDIPGAQDEMVLPPAPPKNSDPSILRAWKLQVKTIANKFSSDR-SNRCD 802
Query: 568 TELKLSVARRMKDEEGFYYPHNLDFRGRAYPMHPHLNHLSSDVCRGVLEFAEGRPLGKSG 627
T KL +AR E+ Y+PHNLDFRGRAYP+ PH NHL +D+ RG+L F G+ LG SG
Sbjct: 803 TNYKLEIARAFLGEK-LYFPHNLDFRGRAYPLSPHFNHLGNDMSRGLLIFWHGKKLGPSG 861
Query: 628 LRWLKIHLANLFSGGVEKLSHDGRLAFVENHLYEIFDSAENPINGSRWWLTAEDPFQCLA 687
L+WLKIHL+NLF G +KL R+AF E+HL +I DSAE + G RWW TA+ P+Q LA
Sbjct: 862 LKWLKIHLSNLF--GFDKLPLKDRVAFTESHLQDIKDSAEKSLTGDRWWTTADKPWQALA 919
Query: 688 ACINLSEALKSSSPHSVISHLPIHQDGSCNGLQHYAALGRNTLEAAAVNLVAGEKPADVY 747
C L+E +K +P ISH P+HQDG+CNGLQHYAALG + A VNLV +KP DVY
Sbjct: 920 TCFELNEVMKMDNPEEFISHQPVHQDGTCNGLQHYAALGGDVEGATQVNLVPSDKPQDVY 979
Query: 748 SEIAVRVHEIMKRDSNKDPSKHPQALLAKILIDQVDRKLVKQTVMTSVYGVTFVGAREQI 807
+ +A V + ++ + K AKIL D++ RK+VKQTVMT+VYGVT+VGA QI
Sbjct: 980 AHVARLVQKRLEIAAEKGDEN------AKILKDKITRKVVKQTVMTNVYGVTYVGATFQI 1033
Query: 808 KRRLEEKGHITDDR-QLFAAACYAAKVTLTALGEIFEAARSIMGWLGDCAKVIASE---- 862
++L I DDR + + Y K +A+ E+F +A I WLG+ AK I+
Sbjct: 1034 AKQLSP---IFDDRKESLDFSKYLTKHVFSAIRELFHSAHLIQDWLGESAKRISKSIRLD 1090
Query: 863 ---------NQP-----VRWTTPLGLPVVQPYCKNERHLIRTSLQVLALQR--EGNLVKI 906
N+P V WTTPLGLP+VQPY + + + T+LQ + + N V
Sbjct: 1091 VDEKSFKNGNKPDFMSSVIWTTPLGLPIVQPYREESKKQVETNLQTVFISDPFAVNPVNA 1150
Query: 907 RKQRTAFPPNFVHSLDGSHMMMTAVACRDAGLHFAGL 943
R+Q+ PPNF+HSLD SHM+++A C GL FA +
Sbjct: 1151 RRQKAGLPPNFIHSLDASHMLLSAAECGKQGLDFASV 1187
>gi|384250319|gb|EIE23799.1| DNA/RNA polymerase [Coccomyxa subellipsoidea C-169]
Length = 591
Score = 471 bits (1212), Expect = e-130, Method: Compositional matrix adjust.
Identities = 244/530 (46%), Positives = 333/530 (62%), Gaps = 39/530 (7%)
Query: 443 MLVPPKKWKGYNKGGYLFLPSYVMRTH----GSRKQQEALKSVTGNCMKKVFEALDTLGS 498
ML+PP W+ ++ GG+L + +MR H G + E + T + +V++AL+ +G
Sbjct: 1 MLIPPLPWRSHDSGGHLIMRGSIMRVHTYPKGVSRAIETAQERTPYGLSRVYDALNAVGE 60
Query: 499 TKWRVNKQVLSVLESIWVSGGNIAGL----VDRN-------------------DVLIPEK 535
W +NK +L+V+E W + I GL VD+ +L+ +
Sbjct: 61 VPWAINKPMLAVVERAWAAQLPICGLPVKYVDQKPQPKSTAKRFRTHHHRHQLQLLLTSQ 120
Query: 536 PLSEDMTEVQKWKWSVRKAKKINQERHSQRCDTELKLSVARRMKDEEGFYYPHNLDFRGR 595
+ T+ K R K +E HS RCD LKL VA KDE FY+PHNLDFRGR
Sbjct: 121 ETGAERTKRMK---GNRLLNKRIRETHSLRCDLNLKLGVANEFKDELRFYFPHNLDFRGR 177
Query: 596 AYPMHPHLNHLSSDVCRGVLEFAEGRPLGKSGLRWLKIHLANLFSGGVEKLSHDGRLAFV 655
AYP+HPHLNH+ DVCRG+L FAE RPLG G+ WL + +AN + ++K+ +GR F
Sbjct: 178 AYPLHPHLNHMGPDVCRGLLTFAEARPLGPDGIGWLYVLIANSWGKSIDKMDFEGRRQFA 237
Query: 656 ENHLYEIFDSAENPINGSRWWLTAEDPFQCLAACINLSEALKSSSPHSVISHLPIHQDGS 715
+ +L + DSAE P++G RWW E P+Q LAAC+ + +AL S +P + +S LP+ DGS
Sbjct: 238 QRNLEAVLDSAERPLDGHRWWTKGEKPWQLLAACMEVRDALASGNPAAYLSRLPVQIDGS 297
Query: 716 CNGLQHYAALGRNTLEAAAVNLVAGEKPADVYSEIAVRVHEIMKRDSNKDPSKHPQALLA 775
CNGLQHYAALGR+ +AVNL P DVY EIAV V++++ D+ K P+AL
Sbjct: 298 CNGLQHYAALGRDKAGGSAVNLRPAPAPQDVYGEIAVEVNKMVAADAEKGV---PEAL-- 352
Query: 776 KILIDQVDRKLVKQTVMTSVYGVTFVGAREQIKRRLEEKGHITDDRQLFAAACYAAKVTL 835
L ++RKLVKQTVMTSVYGVT+VGAR+QI+ RL E+G +D QL+ A YAA++TL
Sbjct: 353 -ALQGHINRKLVKQTVMTSVYGVTYVGARQQIQNRLLERGWSNND-QLYRCASYAARLTL 410
Query: 836 TALGEIFEAARSIMGWLGDCAKVIASENQPVRWTTPLGLPVVQPYCKNERHLIRTSLQVL 895
L E F+ A IM WLG CA ++AS+ V W TPLGLPV+QPY + +H+++T LQ L
Sbjct: 411 QGLEEKFDKAVGIMRWLGQCASIVASQGNAVAWHTPLGLPVLQPYREKYKHVVQTVLQRL 470
Query: 896 AL--QREGNLVKIRKQRTAFPPNFVHSLDGSHMMMTAVACRDAGLHFAGL 943
L REG V R+Q++AFPPN+VHSLD +HMMMTA+AC+ AG+ FAG+
Sbjct: 471 ILMQDREGLPVLRRRQKSAFPPNYVHSLDSTHMMMTALACKQAGIAFAGV 520
>gi|444322297|ref|XP_004181804.1| hypothetical protein TBLA_0G03490 [Tetrapisispora blattae CBS 6284]
gi|387514849|emb|CCH62285.1| hypothetical protein TBLA_0G03490 [Tetrapisispora blattae CBS 6284]
Length = 1352
Score = 471 bits (1211), Expect = e-129, Method: Compositional matrix adjust.
Identities = 303/838 (36%), Positives = 457/838 (54%), Gaps = 97/838 (11%)
Query: 155 LKGLYKRIKLQEYRE-MKKRKFNLLRRRQVKQETEAWERMVDEYKELEAKMIEKRLAPNL 213
LK +R K E+ E + + +L R + E W+ + K EK+L L
Sbjct: 403 LKTDAEREKFDEFLENFNQDRQRVLETRSTEAAKERWKHDFMDAKSRGEAPFEKKLNVKL 462
Query: 214 PHIKGLFLGWFGPLSEAIEREQKMQR-------TKKQKAA-----YAPHIELLPADKVAV 261
W+ + I++E + K+KA YAP++ L+ +K+ V
Sbjct: 463 -------WEWYSQMLPLIKKEVEQANELLQDSLIDKRKAGGISSDYAPYLNLVDPEKMCV 515
Query: 262 IVMHKMMGLVMAGHEDRCVQVVQAAVHIGMAIEQEIRIHSFLEKTKNYKRKKIIADTEEV 321
I + +++ L G ++ +A + +G AIE E R +E++
Sbjct: 516 ITILELLKLNSTGGVFEGMRTARAVISVGKAIELEFR-------------------SEQL 556
Query: 322 LSKEKELLRK-RVNSLIKSKRVMEAQKLLKN---EETK-PWGRDTQAKLGSRLVELLIET 376
+ E + + K V A+K L++ E++K W + +A++GS ++ L+
Sbjct: 557 IRNEMHTFKNVSTKPHVFKKYVWSAKKRLRDHNIEKSKIEWPQAARAQIGSIMISTLLHV 616
Query: 377 AYVQ---HPVNPADYSPPDVRPAFRHRFKTILKHPGQKTTKRYGVVECDPLVLEGLD--R 431
A V H Y ++ PAF H ++ H G K GV++ +++ L+ R
Sbjct: 617 AKVNVRGHDPKTNKYVYGEL-PAFSHSYQY---HNGAKI----GVLKIHKSLIKQLNGER 668
Query: 432 SAKHMLIPYVPMLVPPKKWKGYNKGGYLFLPSYVMRTHGSRKQQEALKSVTG-NCMKKVF 490
A + +PM+V P+KW +N GGY + S ++RT S +Q LK+V+ N + ++
Sbjct: 669 LATSVQPQQMPMIVKPRKWVSWNSGGYHYSQSILIRTRDSPEQVAYLKAVSEENLIPTIY 728
Query: 491 EALDTLGSTKWRVNKQVLSVLESIWVSGG---NIAGLVDRNDVLIPEKPLSEDMTEVQKW 547
L+ +G T W VN++V +VL +W +G +I G+ D + V++P P + + EV++W
Sbjct: 729 SGLNVIGLTGWTVNRKVFNVLSEVWNTGKQFLDIPGIQD-DMVVLPPLPSNAEPEEVREW 787
Query: 548 KWSVRK-AKKINQERHSQRCDTELKLSVARRMKDEEGFYYPHNLDFRGRAYPMHPHLNHL 606
K ++ A KI+ +R S RCD+ KL +AR E+ Y+PHNLDFRGRAYP+ PH NHL
Sbjct: 788 KLKNKEIANKISSDR-SVRCDSNYKLEIARAFLGEK-IYFPHNLDFRGRAYPLSPHFNHL 845
Query: 607 SSDVCRGVLEFAEGRPLGKSGLRWLKIHLANLFSGGVEKLSHDGRLAFVENHLYEIFDSA 666
+D+ RG+L F +GR LG GL+WLK+HLANLF G +K S D R+AF H+ ++ DSA
Sbjct: 846 GNDMSRGLLIFWKGRRLGPQGLKWLKVHLANLF--GYDKASLDDRIAFANQHIEDLKDSA 903
Query: 667 ENPINGSRWWLTAEDPFQCLAACINLSEALKSSSPHSVISHLPIHQDGSCNGLQHYAALG 726
E+P++G WW +A+ P+Q LA C+ L+EA K +P ISH P+HQDG+CNGLQHYAALG
Sbjct: 904 EHPLDGKGWWQSADKPWQALATCMELNEAFKLENPEDFISHQPVHQDGTCNGLQHYAALG 963
Query: 727 RNTLEAAAVNLVAGEKPADVYSEIAVRVHEIMKRDSNKDPSKHPQALLAKILIDQVDRKL 786
+ A VNLV KP DVY+ +A V ++ D + AKIL ++ RK+
Sbjct: 964 GDVEGAIQVNLVPSPKPQDVYNHVAKLV------EARLDVAAKEGDETAKILQGKITRKV 1017
Query: 787 VKQTVMTSVYGVTFVGAREQIKRRLEEKGHITDDRQL-FAAACYAAKVTLTALGEIFEAA 845
VKQTVMT+VYGVTF+GA QI ++L EK DD+QL F Y AK A+ E F+ A
Sbjct: 1018 VKQTVMTNVYGVTFIGATRQIAKQLTEK---FDDKQLAFEYGGYLAKHVFAAIRESFKGA 1074
Query: 846 RSIMGWLGDCAKVIA-------------SENQP-----VRWTTPLGLPVVQPYCKNERHL 887
I WLG+C+K I+ + N+P V WTTPLGLP+VQPY +
Sbjct: 1075 HEIQDWLGECSKRISRAIRLDVDSKSFRNGNKPDFMSSVIWTTPLGLPIVQPYRDESKKQ 1134
Query: 888 IRTSLQVLALQR--EGNLVKIRKQRTAFPPNFVHSLDGSHMMMTAVACRDAGLHFAGL 943
I+T+LQ + + N V R+Q++ FPPNF+HSLD SHM+++A C + GL FA +
Sbjct: 1135 IKTNLQTIFIADPLAVNPVNARRQKSGFPPNFIHSLDASHMLLSATKCGEHGLDFASV 1192
>gi|443897435|dbj|GAC74776.1| mitochondrial/chloroplast DNA-directed RNA polymerase RPO41
[Pseudozyma antarctica T-34]
Length = 1509
Score = 470 bits (1210), Expect = e-129, Method: Compositional matrix adjust.
Identities = 283/752 (37%), Positives = 420/752 (55%), Gaps = 84/752 (11%)
Query: 249 PHIELLPADKVAVIVMHKMMGLVMAGHEDRCVQVVQAAVHIGMAIEQEIRIHSFLEKTKN 308
P + LLP K+A+I + ++M + G ++ +A + +G AIE E HS + +
Sbjct: 594 PFLRLLPVSKLALITVLELMRMSGNGGVSDGMKTTRALLQVGRAIETEY--HSEVIR--- 648
Query: 309 YKRKKIIADTEEVLSKEKELLRKRVNSLIKSKRVMEAQKLLKNE----ETKPWGRDTQAK 364
K KI + + + L ++ + + + E QK + + W + T+A+
Sbjct: 649 -KNPKIF---QNAQAAQAALKKRGLVDFAARREIKEWQKQQEEQGVISSIPKWTQITRAR 704
Query: 365 LGSRLVELLIETAYVQHPVNPAD-YSPPDVRPAFRHRFKTILKHPGQKTTKRYGVVECDP 423
+GS LV+ L++ A V D + +PAF ++ + K+ GV++ +
Sbjct: 705 VGSYLVQHLMQVATVNRKATDRDGILWEEDQPAFYSTYQYL-------GGKKLGVIKLNE 757
Query: 424 LVLEGLDR-SAKHMLIP-YVPMLVPPKKWKGYNKGGYLFLPSYVMRTHGSRKQQEALKSV 481
+V + LD+ S L P ++PMLVPPK W ++ GGY + MR S +Q L++
Sbjct: 758 VVAKRLDKDSISETLHPRHLPMLVPPKPWTSHDSGGYYSVRQSAMRFKDSAEQGSYLRAA 817
Query: 482 TGNC-MKKVFEALDTLGSTKWRVNKQVLSVLESIWVSGGNIAGLVDRN-DVLIPEKPLSE 539
+ N + V ALD LG+T W++NK + V+ +W SG +IA + + P KP +
Sbjct: 818 SDNGDLDTVLAALDVLGNTSWKINKPIFDVMLEVWNSGKDIADMPPMEMETPEPVKPDNY 877
Query: 540 DMTEVQKWKWSVRKAKKINQER---HSQRCDTELKLSVARRMKDEEGFYYPHNLDFRGRA 596
D +++ +++ K+ NQ+R HSQRCD KL +AR E FY+PHN+DFRGRA
Sbjct: 878 DH-DIKARSVYLQRLKQWNQQRSSNHSQRCDVNYKLEIARAYLGER-FYFPHNMDFRGRA 935
Query: 597 YPMHPHLNHLSSDVCRGVLEFAEGRPLGKSGLRWLKIHLANLFSGGVEKLSHDGRLAFVE 656
YPM PHLNH+ +D+CRG+L FA+ +PLGK+GLRWL+IH++N+F G +K S R F
Sbjct: 936 YPMPPHLNHIGNDLCRGLLMFADSKPLGKAGLRWLRIHISNVF--GYDKASFGEREQFAI 993
Query: 657 NHLYEIFDSAENPINGSRWWLTAEDPFQCLAACINLSEALK-SSSPHSVISHLPIHQDGS 715
+H +I DS E P++G+RWWL A+DP+QCLAAC+ L AL P + S LP+HQDG+
Sbjct: 994 DHEADIRDSVERPLDGNRWWLKADDPWQCLAACMELRAALDHPEGPEAYESCLPVHQDGT 1053
Query: 716 CNGLQHYAALGRNTLEAAAVNLVAGEKPADVYSEIAVRVHEIMKRDSNKDPSKHPQALLA 775
CNGLQHYAALG + A VNL G++PADVYS +A V +++ ++ K A
Sbjct: 1054 CNGLQHYAALGGDLAGAKQVNLSGGDRPADVYSGVADLVIKVLDEEAAKGDRT------A 1107
Query: 776 KILIDQVDRKLVKQTVMTSVYGVTFVGAREQIKRRLEEKGHITDDRQLFAAACYAAKVTL 835
KIL +V RK+VKQTVMT+VYGVTF+GA+ Q+ R+L ++G + + LF AA + AKV +
Sbjct: 1108 KILQGKVTRKVVKQTVMTTVYGVTFIGAKNQVMRQLADRGDVPAE-DLFNAASFLAKVIM 1166
Query: 836 TALGEIFEAARSIMGWLGDCAKVIA----------------------------------- 860
+ +G +F A+ I WL AKVIA
Sbjct: 1167 SCIGNLFSGAQKIQDWLSFSAKVIAKSIPGQRVEEATRPYLPNEANLRRADVRGFSRDPA 1226
Query: 861 -------SENQPVRWTTPLGLPVVQPYCKNERHLIRTSLQVLALQRE--GNLVKIRKQRT 911
+ V WTT LGLPVVQPY K ++ + TS+Q + + V KQ +
Sbjct: 1227 KADRIAKEQMTSVIWTTALGLPVVQPYRKAKKRQVSTSMQTVFINDPLLNAEVSPAKQAS 1286
Query: 912 AFPPNFVHSLDGSHMMMTAVACRDAGLHFAGL 943
AFPPNF+HSLD +HM++TA+ C AGL FA +
Sbjct: 1287 AFPPNFIHSLDATHMILTALECHAAGLTFASV 1318
>gi|45185910|ref|NP_983626.1| ACR224Cp [Ashbya gossypii ATCC 10895]
gi|44981700|gb|AAS51450.1| ACR224Cp [Ashbya gossypii ATCC 10895]
gi|374106832|gb|AEY95741.1| FACR224Cp [Ashbya gossypii FDAG1]
Length = 1295
Score = 470 bits (1209), Expect = e-129, Method: Compositional matrix adjust.
Identities = 277/738 (37%), Positives = 412/738 (55%), Gaps = 75/738 (10%)
Query: 242 KQKAAYAPHIELLPADKVAVIVMHKMMGLVMAGHEDRCVQVVQAAVHIGMAIEQEIRIHS 301
+ + YAP+I L+ +K+ VI + +++ L G ++ +A + IG A+E E R
Sbjct: 438 RSRLEYAPYITLVNPEKMCVITILELLSLNSTGGVSEGMRTTRAVLAIGKAVEMEYR--- 494
Query: 302 FLEKTKNYKRKKIIADTEEVLSKEKELLRK-RVNSLIKSKRVMEAQKLLKN---EETKP- 356
+E +L EK + ++ R NS K V A+ +N EE+K
Sbjct: 495 ----------------SEALLKSEKSIFKEVRANSNEFKKLVQRAKTTFRNTQIEESKVL 538
Query: 357 WGRDTQAKLGSRLVELLIETAYVQ-HPVNP-ADYSPPDVRPAFRHRFKTILKHPGQKTTK 414
W + +AK+GS L+ +LI A V V+P + + PA H F+ +
Sbjct: 539 WPHNIKAKVGSLLISMLIHVAKVNVKGVDPVTNKTVYGKAPAICHTFQ-------YRMGS 591
Query: 415 RYGVVECDPLVLEGL--DRSAKHMLIPYVPMLVPPKKWKGYNKGGYLFLPSYVMRTHGSR 472
+ GV++ + + DR + + ++PMLV P+ W +N GGYLF S ++R+ S
Sbjct: 592 KVGVLKLHRSLANQMSSDRLSANFQPQHLPMLVKPRPWTSWNSGGYLFTKSTLIRSKDSP 651
Query: 473 KQQEALKSVTG-NCMKKVFEALDTLGSTKWRVNKQVLSVLESIWVSGGNIAGLVDRND-V 530
+Q +K+VTG ++ V++ L+ LG T W VNK +L ++ +W SG + + D +
Sbjct: 652 EQSAYIKAVTGKGVVQNVYKGLNVLGETAWTVNKNMLHIISKVWNSGTEFLDIPPQQDEL 711
Query: 531 LIPEKPLSEDMTE-----VQKWKWSVRKAKKINQERHSQRCDTELKLSVARRMKDEEGFY 585
L+P KP ED +E +++WK R Q+ S RCD KL +AR E+ FY
Sbjct: 712 LLPAKPRGEDGSEPEPIVLKRWKQECRFLNAEYQKHRSMRCDANYKLEIARAFIGEK-FY 770
Query: 586 YPHNLDFRGRAYPMHPHLNHLSSDVCRGVLEFAEGRPLGKSGLRWLKIHLANLFSGGVEK 645
+PHN+DFRGRAYP+ PH NHL +D+ R +L F EG+ LGK GLRWLKIH+ NL+ G++K
Sbjct: 771 FPHNMDFRGRAYPLAPHFNHLGNDMTRSLLIFWEGKRLGKEGLRWLKIHMGNLY--GLDK 828
Query: 646 LSHDGRLAFVENHLYEIFDSAENPINGSRWWLTAEDPFQCLAACINLSEALKSSSPHSVI 705
+ + R+AF E HL +I DSAENP+NG WW A+ P+QCLA C+ ++ A K S+P +
Sbjct: 829 QTFEARVAFTEAHLEDIKDSAENPLNGKGWWKKADKPWQCLATCMEINNAYKLSNPEDYV 888
Query: 706 SHLPIHQDGSCNGLQHYAALGRNTLEAAAVNLVAGEKPADVYSEIAVRVHEIMKRDSNKD 765
SH P+HQDG+CNGLQHYAALG + A VNLV +KP DVY+ +A V E +++ + +
Sbjct: 889 SHQPVHQDGTCNGLQHYAALGGDIEGARQVNLVPSDKPQDVYAFVAKLVTERLEKAALEG 948
Query: 766 PSKHPQALLAKILIDQVDRKLVKQTVMTSVYGVTFVGAREQIKRRLEEKGHITDDRQLFA 825
Q L + + RK+VK+TVMT+VYGVTF+GA QI + L++ D+ +
Sbjct: 949 DQNAAQ------LKNLITRKVVKRTVMTNVYGVTFIGATNQIDKELQDA--FPDNS--YD 998
Query: 826 AACYAAKVTLTALGEIFEAARSIMGWLGDCAKVIASENQ------------------PVR 867
A Y K ++ E+F AA I WLG+ AK I+ + V
Sbjct: 999 MARYLTKHVFNSIRELFHAAHLIQDWLGESAKKISKSIRLDLELEKIKKLDNSIMMTSVI 1058
Query: 868 WTTPLGLPVVQPYCKNERHLIRTSLQVLALQR--EGNLVKIRKQRTAFPPNFVHSLDGSH 925
WT+PLGLPVVQPY ++ I T+LQ + + N + R+Q FPPNF+HSLD SH
Sbjct: 1059 WTSPLGLPVVQPYRDIKKKQIHTNLQTVFIADPFAVNPIDPRRQMAGFPPNFIHSLDASH 1118
Query: 926 MMMTAVACRDAGLHFAGL 943
M+++A+ C GL FA +
Sbjct: 1119 MLLSAIECGRLGLQFAAV 1136
>gi|89148144|gb|ABD62815.1| mitochondrial single-subunit RNA polymerase [Vermamoeba
vermiformis]
Length = 992
Score = 469 bits (1207), Expect = e-129, Method: Compositional matrix adjust.
Identities = 287/803 (35%), Positives = 444/803 (55%), Gaps = 67/803 (8%)
Query: 180 RRQVKQETEAWERMVDEYKELEAKMIEKRLAPNLPHIKGLFLGWFGPLSEAIEREQKM-- 237
+ Q+ E EA ER ++KEL +++ L L WF PL + ++ E+++
Sbjct: 149 KEQLYLEMEAVEREAKKFKELVDDVLKLNRGACLDPGTEFLLQWFQPLVKLLDLEKQLSL 208
Query: 238 ------QRTKKQKAA------------YAPHIELLPADKVAVIVMHKMMGLVMAGHEDRC 279
Q + A Y H + +DK+AVIV+H+++G E
Sbjct: 209 ADPGVHQELRASVEALGVLYNEQYLHEYHAHTNEVASDKLAVIVIHELIGAAAGLKEQSP 268
Query: 280 VQ-VVQAAVHIGMAIEQEIRIHSFLEKTKNYKRKKIIADTEE-----VLSKEKELLRKRV 333
V+ VVQ I A++ E+ ++ +N + D+ E V +K+K KRV
Sbjct: 269 VRSVVQ---QISEAVQGEVNWQDLKDELENPAESRATPDSAENPSGTVPAKKK----KRV 321
Query: 334 NSLIKSKRV-MEAQKLLKNEETKPWGRDTQAKLGSRLVELLIETAYV--QHPVNPADYSP 390
+ R+ A K+L +E W R + +G+RL+ LL+ A + + PV ++
Sbjct: 322 VNFTSVNRLNRRALKVLGSEAL--WSRGLKEFMGARLLALLLSVAQLREEDPVTGIFHA- 378
Query: 391 PDVRPAFRHRFKTILKHPGQKTTKRYG--VVECDPLVLEGLDRSAKHML--IPYVPMLVP 446
RPAF +T + G +T V V D H I PM +P
Sbjct: 379 ---RPAFEVSHRTQHRKEGMDSTHNPSRLSVSASEAVRARFDAMMTHFFHFIRQYPMQIP 435
Query: 447 PKKWKGYNKGGYLFLPSYVMRTHGSRKQQEALKSVTGNCMKKVFEALDTLGSTKWRVNKQ 506
P+ W ++GGYL + + R +Q L + + + ++E L+ LG T WR+ ++
Sbjct: 436 PRPWDSPDRGGYLAVQVPIFRYQSYEEQFRPLFRKSDD-LAVIYEGLNALGETPWRIYQR 494
Query: 507 VLSVLESIWVSGGNIAGLVDRNDVLIPEKPLSEDMTEVQKWKWSVRKAKKINQERHSQRC 566
V V++ W GG++A + DR D P+ + + +W ++K ++N + S R
Sbjct: 495 VYHVVKRAWEQGGDLADIPDRRD---KPYPMPTALGKDSRWYRQLKKIDQLNYDLVSLRA 551
Query: 567 DTELKLSVARRMKDEEGFYYPHNLDFRGRAYPMHPHLNHLSSDVCRGVLEFAEGRPLGKS 626
D LK+ VA + D+ Y+PHN+DFRGR YP+ PHLNH+ SD+ RG+L FA+G+PLG+
Sbjct: 552 DFLLKMEVAEKFMDKT-LYFPHNMDFRGRVYPVPPHLNHMGSDMSRGLLWFADGKPLGER 610
Query: 627 GLRWLKIHLANLFSGGVEKLSHDGRLAFVENHLYEIFDSAENPINGSRWWLTAEDPFQCL 686
GL WL+I LANL+ G +K+ RL FV + +I+ A+ P+ RWW+ A+ P+Q L
Sbjct: 611 GLHWLRIQLANLY--GFDKVPFSDRLDFVSKNQDKIYSCAQRPLE-DRWWVAADSPWQFL 667
Query: 687 AACINLSEALKSSSPHSVISHLPIHQDGSCNGLQHYAALGRNTLEAAAVNLVAGEKPADV 746
AAC A+ S+ PHS +SHLPI QDG+CNGLQHYAALG + A +VNL+ ++P DV
Sbjct: 668 AACFEYYNAMHSADPHSYVSHLPIQQDGTCNGLQHYAALGGDEQGAKSVNLLPSDRPQDV 727
Query: 747 YSEIAVRVHEIMKRDSNKDPSKHPQALLAKILIDQVDRKLVKQTVMTSVYGVTFVGAREQ 806
YS++A V + + RD+ +A++ +VDRK+VKQTVMTSVYGVTF+GAR+Q
Sbjct: 728 YSDVAELVAQRIHRDAENG------VAVAQLSKGRVDRKVVKQTVMTSVYGVTFIGARQQ 781
Query: 807 IKRRLEEK---GHITDDRQLFAAACYAAKVTLTALGEIFEAARSIMGWLGDCAKVIASEN 863
I +++ H+TD+ +++ A+ Y A++T +L E+F AR+IM WL CAK++A +
Sbjct: 782 ITNAMKDHRLLTHLTDN-EMYQASQYIAQLTFESLKEMFTGARNIMDWLATCAKLVAKKG 840
Query: 864 QPVRWTTPLGLPVVQPYCKNERH-LIRTSLQVLALQREGNL--VKIRKQRTAFPPNFVHS 920
+ V WTTPLGLPVVQPY + R + T +Q +AL+ E V +QR+AFPPNF+HS
Sbjct: 841 RLVSWTTPLGLPVVQPYRRQSRTGTVETVVQSVALEHEPTKWPVYSNRQRSAFPPNFIHS 900
Query: 921 LDGSHMMMTAVACRDAGLHFAGL 943
LD +HM++TA+ C+ + +A +
Sbjct: 901 LDSTHMLLTAIHCKRQQITYASV 923
>gi|401625948|gb|EJS43925.1| rpo41p [Saccharomyces arboricola H-6]
Length = 1351
Score = 468 bits (1205), Expect = e-129, Method: Compositional matrix adjust.
Identities = 299/817 (36%), Positives = 435/817 (53%), Gaps = 97/817 (11%)
Query: 177 LLRRRQVKQETEAWERMVDEYKELEAKMIEKRLAPNL--------PHIKGLFLGWFGPLS 228
+L R + E W+ +E K IEK L L P +K LS
Sbjct: 418 VLENRATEAARERWKHDFEEAKARGDISIEKNLNAKLWRWYNDMLPLVKEEIKHCKSSLS 477
Query: 229 EAIEREQKMQRTKKQKAAYAPHIELLPADKVAVIVMHKMMGLVMAGHEDRCVQVVQAAVH 288
E ++ + + + + Y P++ L+ K+ VI + +++ L G ++ +A +
Sbjct: 478 EKPTDKKGLTKVEINRLGYGPYLTLIDPGKMCVITILELLKLNSTGGVIEGMRTARAVIS 537
Query: 289 IGMAIEQEIRIHSFLEKTKNYKRKKIIADTEEVLSKEKELLRKRVNSLIKSKRVMEAQKL 348
+G AIE E R +E+VL E + R VN K+ E +KL
Sbjct: 538 VGKAIEMEFR-------------------SEQVLKSESQTFRD-VN-----KKSPEFKKL 572
Query: 349 LKN----------EETKP-WGRDTQAKLGSRLVELLIETAYVQ----HPVNPADYSPPDV 393
++N E++K W ++ +A++GS L+ +LI A V P+ A
Sbjct: 573 VQNAKSVFRSSQIEQSKILWPQNIRAQIGSVLISMLIHVAKVSVQGVDPITKAKVHGE-- 630
Query: 394 RPAFRHRFKTILKHPGQKTTKRYGVVECDPLVLEGLD--RSAKHMLIPYVPMLVPPKKWK 451
PAF H ++ H G K GV++ ++ L+ R + +PMLV PK W
Sbjct: 631 APAFAHGYQY---HNGSK----LGVLKIHKTLIHQLNGERLIASVQPQLLPMLVEPKSWI 683
Query: 452 GYNKGGYLFLPSYVMRTHGSRKQQEALKSVTGNC-MKKVFEALDTLGSTKWRVNKQVLSV 510
+ GGY + S ++RT S +Q LK+ + N + +V++ L+ LG+T W VN++V V
Sbjct: 684 NWRSGGYHYTQSTLLRTKDSPEQVAYLKAASENGDIDRVYDGLNVLGNTPWTVNRKVFDV 743
Query: 511 LESIWVSGGNIAGLVDRND--VLIPEKPLSEDMTEVQKWKWSVRK-AKKINQERHSQRCD 567
+ +W + D VL P P + D + ++ WK V+ A K + +R S RCD
Sbjct: 744 VSQVWNKREGFLDIPGAQDEMVLPPAPPRNSDPSILRTWKLEVKTIANKFSSDR-SNRCD 802
Query: 568 TELKLSVARRMKDEEGFYYPHNLDFRGRAYPMHPHLNHLSSDVCRGVLEFAEGRPLGKSG 627
T KL +AR E+ Y+PHNLDFRGRAYP+ PH NHL +D+ RG+L F G+ LG SG
Sbjct: 803 TNYKLEIARAFLGEK-LYFPHNLDFRGRAYPLSPHFNHLGNDMSRGLLIFWHGKKLGPSG 861
Query: 628 LRWLKIHLANLFSGGVEKLSHDGRLAFVENHLYEIFDSAENPINGSRWWLTAEDPFQCLA 687
L+WLKIHL+NLF G +KL + R++F E+HL +I DSAENP+ G WW TA+ P+Q LA
Sbjct: 862 LKWLKIHLSNLF--GFDKLRLEDRVSFTESHLEDIKDSAENPLTGQGWWKTADKPWQALA 919
Query: 688 ACINLSEALKSSSPHSVISHLPIHQDGSCNGLQHYAALGRNTLEAAAVNLVAGEKPADVY 747
C L+E +K +P ISH PIHQDG+CNGLQHYAALG + A VNLV +KP DVY
Sbjct: 920 TCFELNEVMKMDNPEDFISHQPIHQDGTCNGLQHYAALGGDVEGATQVNLVPSDKPQDVY 979
Query: 748 SEIAVRVHEIMKRDSNKDPSKHPQALLAKILIDQVDRKLVKQTVMTSVYGVTFVGAREQI 807
+ +A V + ++ + K AKIL D++ RK+VKQTVMT+VYGVT+VGA QI
Sbjct: 980 AHVARLVQKRLEIAAEKGDEN------AKILQDKITRKVVKQTVMTNVYGVTYVGATFQI 1033
Query: 808 KRRLEEKGHITDDR-QLFAAACYAAKVTLTALGEIFEAARSIMGWLGDCAKVIASE---- 862
++L I DDR + + Y K A+ E+F +A I WLG+ AK I+
Sbjct: 1034 AKQLSP---IFDDRKESLDFSKYLTKHVFGAIRELFHSAHLIQDWLGESAKRISKSIRLD 1090
Query: 863 ---------NQP-----VRWTTPLGLPVVQPYCKNERHLIRTSLQVLALQR--EGNLVKI 906
N+P V WTTPLGLP+VQPY + + + T+LQ + + N V
Sbjct: 1091 VDEKSFKNGNKPDFMSSVIWTTPLGLPIVQPYREESKKQVETNLQTVFISDPFAVNPVNA 1150
Query: 907 RKQRTAFPPNFVHSLDGSHMMMTAVACRDAGLHFAGL 943
R+Q+ PPNF+HSLD SHM+++A C + GL FA +
Sbjct: 1151 RRQKAGLPPNFIHSLDASHMLLSAAECGEKGLDFASV 1187
>gi|255719121|ref|XP_002555841.1| KLTH0G18744p [Lachancea thermotolerans]
gi|238937225|emb|CAR25404.1| KLTH0G18744p [Lachancea thermotolerans CBS 6340]
Length = 1289
Score = 468 bits (1204), Expect = e-129, Method: Compositional matrix adjust.
Identities = 269/735 (36%), Positives = 417/735 (56%), Gaps = 63/735 (8%)
Query: 238 QRTKKQKAAYAPHIELLPADKVAVIVMHKMMGLVMAGHEDRCVQVVQAAVHIGMAIEQEI 297
++ K + Y P++ L+ +K+ VI + +++ L G ++ +A + +G AIE E
Sbjct: 428 KKQNKARQEYGPYLTLVDPEKMCVITILELLKLNSTGGIIEGMRTARAVISVGKAIEMEF 487
Query: 298 RIHSFLEKTKNYKRKKIIADTEEVLSKEKELLRKRVNSLIKSKRVMEAQKLLKNEETKPW 357
R L+ + + D + S E +L+ +R + +S ++ E++ L W
Sbjct: 488 RAEMLLKNESH-----VFKDVNKK-SHEFKLMVQRARATFRSIKIEESKVL--------W 533
Query: 358 GRDTQAKLGSRLVELLIETAYVQ-HPVNP-ADYSPPDVRPAFRHRFKTILKHPGQKTTKR 415
++ +AK+GS L+ +LI A V+ V+P + PAF H ++ H G K
Sbjct: 534 PQEARAKIGSILISMLIHVAKVKVEGVDPVTNEKIKGEAPAFSHGYQY---HNGSK---- 586
Query: 416 YGVVECDPLVLEGLD--RSAKHMLIPYVPMLVPPKKWKGYNKGGYLFLPSYVMRTHGSRK 473
GV++ ++ L+ R + +PMLV P+ W +N GGY + S ++R+ S +
Sbjct: 587 LGVLKIHRSLIHQLNGERLVAAVQPQLLPMLVKPRAWNSWNSGGYYYTQSTLIRSKDSPE 646
Query: 474 QQEALKSVT-GNCMKKVFEALDTLGSTKWRVNKQVLSVLESIWVSGG---NIAGLVDRND 529
Q LK+V+ + V+ L+ LG T W VN+++ +V+ +W SG +I G+ ++
Sbjct: 647 QVAYLKAVSDAGAIDNVYRGLNVLGETPWTVNRKMFNVMSQVWNSGKPFLDIPGIQEKL- 705
Query: 530 VLIPEKPLSEDMTEVQKWKWSVRKAKKINQERHSQRCDTELKLSVARRMKDEEGFYYPHN 589
L P+ P D + ++WK ++ S RCD KL +AR E+ FY+PHN
Sbjct: 706 TLTPQPPRDADPSVHREWKLKNKELANEFSGNRSARCDANYKLEIARAFLGEK-FYFPHN 764
Query: 590 LDFRGRAYPMHPHLNHLSSDVCRGVLEFAEGRPLGKSGLRWLKIHLANLFSGGVEKLSHD 649
LDFRGRAYP+ PH NHL +D+ RG++ F G+ LG +GLRWLK+HL+NLF G +K +
Sbjct: 765 LDFRGRAYPLSPHFNHLGNDMSRGLMTFWHGKRLGSTGLRWLKVHLSNLF--GFDKAPLE 822
Query: 650 GRLAFVENHLYEIFDSAENPINGSRWWLTAEDPFQCLAACINLSEALKSSSPHSVISHLP 709
R+ F E+H+ +I DSAE+P++G WW A+ P+Q LA C+ L+EALK S+P +SH P
Sbjct: 823 DRVRFAEDHIDDIRDSAEHPLDGKCWWKEADKPWQALATCMELNEALKMSNPDDFVSHQP 882
Query: 710 IHQDGSCNGLQHYAALGRNTLEAAAVNLVAGEKPADVYSEIA-VRVHEIMKRDSNKDPSK 768
+HQDG+CNGLQHYAALG + A VNLV ++P DVYS +A + V + K +N D +
Sbjct: 883 VHQDGTCNGLQHYAALGGDIEGATQVNLVPSDRPQDVYSHVAKLVVARLEKAAANGDET- 941
Query: 769 HPQALLAKILIDQVDRKLVKQTVMTSVYGVTFVGAREQIKRRLEEKGHITDDRQLFAAAC 828
A +L D++ RK+VKQTVMT+VYGVT++GA QI ++L D ++ + +
Sbjct: 942 ------AALLKDKIKRKVVKQTVMTNVYGVTYIGATHQIDKQLSTL--FNDHKRSYELSK 993
Query: 829 YAAKVTLTALGEIFEAARSIMGWLGDCAKVIASE-------------NQP-----VRWTT 870
Y K ++ E+FE A I WLG+CAK I+ N+P V WTT
Sbjct: 994 YLTKHVFASVRELFEGAHLIQDWLGECAKRISKSIRLDVDEKTLKNGNKPDFMSSVIWTT 1053
Query: 871 PLGLPVVQPYCKNERHLIRTSLQVLALQREG--NLVKIRKQRTAFPPNFVHSLDGSHMMM 928
PLGLP+VQPY +N + + T+LQ + + N + R+Q+ FPPNF+HSLD SHM++
Sbjct: 1054 PLGLPIVQPYRENGKKQVATNLQTVFISDPFAINPINARRQKAGFPPNFIHSLDASHMLL 1113
Query: 929 TAVACRDAGLHFAGL 943
+A C + GL FA +
Sbjct: 1114 SAAKCGEKGLDFAAV 1128
>gi|326484447|gb|EGE08457.1| DNA-directed RNA polymerase [Trichophyton equinum CBS 127.97]
Length = 1375
Score = 468 bits (1203), Expect = e-129, Method: Compositional matrix adjust.
Identities = 287/830 (34%), Positives = 447/830 (53%), Gaps = 87/830 (10%)
Query: 166 EYREMKKRKFNLLRRRQVKQE--TEAWERMVDEYKEL--EAKMIEKRLAPNLPHIKGLFL 221
E RE+ +++ LR+ Q++++ T A ER E + + + + +E RL + +
Sbjct: 358 EERELNRKR---LRQEQLERDSLTSAIERWRKESEGVIGQRRQVEARLNA---FVYEWYQ 411
Query: 222 GWFGPLSEAIEREQKMQRTKK------QKAAYAPHIELLPADKVAVIVMHKMMGLVMAGH 275
G G + + +E ++ + KK ++ Y P + + K+A + + ++G + +
Sbjct: 412 GVLGKIKDELELAKRSESKKKLTPEESERCEYTPFLLAVGPSKLAAVTILSVLGSIGSSG 471
Query: 276 EDRCVQVVQAAVHIGMAIEQEIRIHSFLEKTKNYKRKKIIADTE---EVLSKEKELLRKR 332
D+ +++ +IG A++ E I + R+ I + + EV K + +
Sbjct: 472 MDKGIKLSSLFTNIGRAVKDEYIIET--------TRRSAIEEAQSENEVYYLNKTFRQMK 523
Query: 333 V-NSLIKSKRVMEAQKLLKNEETKPWGRDTQAKLGSRLVELLIETAYVQHPVNPADYSPP 391
V NS K + M QK K++ W T+ K+G+ L +L TA + P + D
Sbjct: 524 VYNSTGKFRSYM--QKHAKDQPPVHWPASTEIKIGALLSSMLFSTAEI--PTSHKDPITE 579
Query: 392 DV----RPAFRHRFKTILKHPGQKTTKRYGVVECDPLVLEGLDRS-AKHMLIPYVPMLVP 446
V PAF+H ++ H G V+ V+E L + + ++L ++PM+
Sbjct: 580 KVTYAKEPAFQHVYQLQKGH-------NVGYVQLHEKVVEKLRKEPSGNLLAKHLPMVST 632
Query: 447 PKKWKGYNKGGYLFLPSYVMRTHGSRKQQEALKSVTGNC-MKKVFEALDTLGSTKWRVNK 505
P+ W N+GG+L P+ V+RT Q + L++ + + ++++ L LG T W++N+
Sbjct: 633 PRPWVSNNQGGFLTQPTQVVRTRHDDAQSQYLQAASDRGDLDELYKGLTILGKTGWKINR 692
Query: 506 QVLSVLESIWVSGGNIAGLVDRNDVLIP-EKPLSEDMTEVQKWKWSVRKAKKINQERHSQ 564
V V+ W SG +A +V N L EKP +ED V+ + + +A HSQ
Sbjct: 693 PVFDVMLEAWNSGEEVANIVAANLNLAELEKPDAEDHEAVKAYYRAKTRADNKKMGNHSQ 752
Query: 565 RCDTELKLSVARRMKDEEGFYYPHNLDFRGRAYPMHPHLNHLSSDVCRGVLEFAEGRPLG 624
RC ++ +AR +E FY PHN+DFRGRAYP+ P+ N + +D CRG+L F+EGR LG
Sbjct: 753 RCYLNFQMEIARAYLNE-SFYLPHNMDFRGRAYPLPPYFNQMGADNCRGLLLFSEGRVLG 811
Query: 625 KSGLRWLKIHLANLFSGGVEKLSHDGRLAFVENHLYEIFDSAENPINGSRWWLTAEDPFQ 684
+SGLRWL+IHL+N+F G +K S R F +H+ +I DSA N + G RWWL A DPFQ
Sbjct: 812 ESGLRWLRIHLSNVF--GFDKASFQEREQFAIDHVEDILDSANNGLKGKRWWLQAADPFQ 869
Query: 685 CLAACINLSEALKSSSPHSVISHLPIHQDGSCNGLQHYAALGRNTLEAAAVNLVAGEKPA 744
CLAAC+ L AL P +SHLP+HQDGSCNGLQHYAALG + + A VNL G++P+
Sbjct: 870 CLAACVELKNALSLPDPTQYVSHLPVHQDGSCNGLQHYAALGGDAIGARQVNLEPGDRPS 929
Query: 745 DVYSEIAVRVHEIMKRDSNK-DPSKHPQALLAKILIDQVDRKLVKQTVMTSVYGVTFVGA 803
D+Y+ +A V + D+ DP +AK++ ++ RK+VKQTVMT+VYGVTF+GA
Sbjct: 930 DIYTAVAEHVKASIASDAKAGDP-------IAKLMDGKITRKVVKQTVMTNVYGVTFIGA 982
Query: 804 REQIKRRLEEK-GHITDDRQLFAAACYAAKVTLTALGEIFEAARSIMGWLGDCAKVIASE 862
Q++R++E+ + + ++ A + ++ +AL +F A I WLGDCA +
Sbjct: 983 TRQVRRQIEDHYPELAESDEISKCAVHVSRAIFSALNSMFSGAHDIQFWLGDCANRVTRS 1042
Query: 863 ---------------------------NQPVRWTTPLGLPVVQPYCKNERHLIRTSLQVL 895
N V WTTPL LPVVQPY + + I TSLQ+
Sbjct: 1043 LNPSQIEEIRKELDSPSKTDLSKKLKFNNSVIWTTPLRLPVVQPYREAKARQIPTSLQLC 1102
Query: 896 ALQ--REGNLVKIRKQRTAFPPNFVHSLDGSHMMMTAVACRDAGLHFAGL 943
++ R N V RKQ AFPPNF+HSLD +HMMM+A+ C + GL F+ +
Sbjct: 1103 TIKDIRGANEVNRRKQLQAFPPNFIHSLDATHMMMSAIKCDELGLTFSAV 1152
>gi|327305697|ref|XP_003237540.1| DNA-directed RNA polymerase 1A [Trichophyton rubrum CBS 118892]
gi|326460538|gb|EGD85991.1| DNA-directed RNA polymerase 1A [Trichophyton rubrum CBS 118892]
Length = 1375
Score = 467 bits (1202), Expect = e-128, Method: Compositional matrix adjust.
Identities = 286/840 (34%), Positives = 443/840 (52%), Gaps = 89/840 (10%)
Query: 156 KGLYKRIKLQEYREMKKRKFNLLRRRQVKQETEAW----ERMVDEYKELEAKMIEKRLAP 211
K L+ R + R K+ + L R + E W E + + +++EAK+
Sbjct: 350 KKLWGRTPEERERNRKRLRQEQLERDSLTSAIERWRKESEGAIGQRRQVEAKLNA----- 404
Query: 212 NLPHIKGLFLGWFGPLSEAIEREQKMQRTKK------QKAAYAPHIELLPADKVAVIVMH 265
+ + G G + E +E ++ + KK ++ Y P + + K+A + +
Sbjct: 405 ---FMYEWYQGVLGKIKEELELAKRSESKKKLTPEESERCEYIPFLLAIGPSKLAAVTIL 461
Query: 266 KMMGLVMAGHEDRCVQVVQAAVHIGMAIEQEIRIHSFLEKTKNYKRKKIIADTE---EVL 322
++G + + D+ +++ +IG A++ E I + R+ I + + EV
Sbjct: 462 SVLGSIGSSGMDKGIKLSSLFTNIGRAVKDEYIIET--------TRRSAIEEAQSENEVY 513
Query: 323 SKEKELLRKRV-NSLIKSKRVMEAQKLLKNEETKPWGRDTQAKLGSRLVELLIETAYVQH 381
K + +V NS K + M QK K++ W T+ K+G+ L +L TA +
Sbjct: 514 YLNKTFRQMKVYNSTGKFRSYM--QKHTKDQPPVHWPASTEIKIGALLSSMLFSTAEI-- 569
Query: 382 PVNPADYSPPDV----RPAFRHRFKTILKHPGQKTTKRYGVVECDPLVLEGLDRS-AKHM 436
P + D V PAF+H ++ H G V+ V+E L + + ++
Sbjct: 570 PTSHKDPVTEKVTYAKEPAFQHVYQLQKGH-------NVGYVQLHEKVVERLRKEPSGNL 622
Query: 437 LIPYVPMLVPPKKWKGYNKGGYLFLPSYVMRTHGSRKQQEALKSVTGNC-MKKVFEALDT 495
L ++PM+ P+ W N+GG+L P+ V+RT Q + L++ + + ++++ L
Sbjct: 623 LAKHLPMVSTPRPWVSNNQGGFLTQPTQVVRTRHDDAQSQYLQAASDRGDLDELYKGLTI 682
Query: 496 LGSTKWRVNKQVLSVLESIWVSGGNIAGLVDRNDVLIP-EKPLSEDMTEVQKWKWSVRKA 554
LG T W++N+ V V+ W SG +A +V N L EKP +ED V+ + + +A
Sbjct: 683 LGKTGWKINRPVFDVMLEAWNSGEEVANIVAANLNLAELEKPDAEDHEAVKAYYRAKTRA 742
Query: 555 KKINQERHSQRCDTELKLSVARRMKDEEGFYYPHNLDFRGRAYPMHPHLNHLSSDVCRGV 614
HSQRC ++ +AR +E FY PHN+DFRGRAYP+ P+ N + +D CRG+
Sbjct: 743 DNKKMGNHSQRCYLNFQMEIARAYLNE-SFYLPHNMDFRGRAYPLPPYFNQMGADNCRGL 801
Query: 615 LEFAEGRPLGKSGLRWLKIHLANLFSGGVEKLSHDGRLAFVENHLYEIFDSAENPINGSR 674
L F+EGR LG+SGLRWL+IHL+N+F G +K S R F +H+ +I DSA N + G R
Sbjct: 802 LLFSEGRVLGESGLRWLRIHLSNVF--GFDKASFQEREQFAIDHVEDILDSANNGLKGKR 859
Query: 675 WWLTAEDPFQCLAACINLSEALKSSSPHSVISHLPIHQDGSCNGLQHYAALGRNTLEAAA 734
WWL A DPFQCLAAC+ L AL P +SHLP+HQDGSCNGLQHYAALG + + A
Sbjct: 860 WWLQAADPFQCLAACVELKNALSLPDPTQYVSHLPVHQDGSCNGLQHYAALGGDAIGARQ 919
Query: 735 VNLVAGEKPADVYSEIAVRVHEIMKRDSNK-DPSKHPQALLAKILIDQVDRKLVKQTVMT 793
VNL G++P+D+Y+ +A V + D+ DP +AK++ ++ RK+VKQTVMT
Sbjct: 920 VNLEPGDRPSDIYTAVAEHVKASIASDAKAGDP-------IAKLMDGKITRKVVKQTVMT 972
Query: 794 SVYGVTFVGAREQIKRRLEEK-GHITDDRQLFAAACYAAKVTLTALGEIFEAARSIMGWL 852
+VYGVTF+GA Q++R++E+ + + ++ A + ++ +AL +F A I WL
Sbjct: 973 NVYGVTFIGATRQVRRQIEDHYPELAESDEISKCAVHVSRAIFSALNSMFSGAHDIQFWL 1032
Query: 853 GDCAKVIASE---------------------------NQPVRWTTPLGLPVVQPYCKNER 885
GDCA + N V WTTPL LPVVQPY + +
Sbjct: 1033 GDCANRVTRSLNPSQIDEIRKELDSPSKTDLSKNLKFNNSVIWTTPLRLPVVQPYREAKA 1092
Query: 886 HLIRTSLQVLALQ--REGNLVKIRKQRTAFPPNFVHSLDGSHMMMTAVACRDAGLHFAGL 943
I TSLQ+ ++ R N V RKQ AFPPNF+HSLD +HMM++A+ C + GL F+ +
Sbjct: 1093 RQIPTSLQLCTIKDIRGANEVNRRKQLQAFPPNFIHSLDATHMMLSAIKCDELGLTFSAV 1152
>gi|89148154|gb|ABD62820.1| mitochondrial single-subunit RNA polymerase [Stygamoeba sp.
ruffled]
Length = 661
Score = 467 bits (1202), Expect = e-128, Method: Compositional matrix adjust.
Identities = 247/550 (44%), Positives = 341/550 (62%), Gaps = 24/550 (4%)
Query: 405 LKHPGQKTTKR-YGVVECDPLVLEG-----LDRSAKHMLIPYVPMLVPPKKWKGYNKGGY 458
KH TTKR G + C P VL+ L + A H + +PM+VPPK W + GGY
Sbjct: 56 FKHTYTYTTKRKVGAITCAPSVLQTIRDGHLAQEANHARM--LPMVVPPKPWTAPDVGGY 113
Query: 459 LFLPSYVMRTHGSRKQQEALKSVTGNCMKKVFEALDTLGSTKWRVNKQVLSVLESIWVSG 518
L + S VMR SR Q + L S TG + V+ +LD L + W++NK+VL V + +W G
Sbjct: 114 LVVKSNVMRVRDSRLQWDML-SKTGTDLSNVYRSLDELSAVPWKINKRVLRVAQELWQRG 172
Query: 519 GNIAGLVDRNDVLIPEKPLS-EDMTEVQKWKW--SVRKAKKINQERHSQRCDTELKLSVA 575
G I L R D+ +PE P + +DM ++ + +R+ ++ N + HS RCDT LKL VA
Sbjct: 173 GGIGDLPSRTDLPLPEAPDNYKDMDPAERSAYYRHLRRQQRANADLHSLRCDTTLKLGVA 232
Query: 576 RRMKDEEGFYYPHNLDFRGRAYPMHPHLNHLSSDVCRGVLEFAEGRPLGKSGLRWLKIHL 635
+ ++ + FY+PHN+DFRGR YP+ PHLNHL SD+CRG+L F+EGR LG +GL WLK+ L
Sbjct: 233 EQFQNLDRFYFPHNMDFRGRTYPIPPHLNHLGSDLCRGLLCFSEGRELGPNGLGWLKVQL 292
Query: 636 ANLFSGGVEKLSHDGRLAFVENHLYEIFDSAENPINGSRWWLTAEDPFQCLAACINLSEA 695
ANLF G K S R F + ++ + +A +P + WW A+DP+Q L+ C L++A
Sbjct: 293 ANLF--GNNKCSFADRQRFADENMARVLATAADPATET-WWHAADDPWQALSTCYELTDA 349
Query: 696 LKSSSPHSVISHLPIHQDGSCNGLQHYAALGRNTLEAAAVNLVAGEKPADVYSEIAVRVH 755
L S P +S+LPIH DGSCNGLQHYAALG + A VNL+ +P DVYS +A V
Sbjct: 350 LASPDPARHVSYLPIHMDGSCNGLQHYAALGGDEEGARKVNLLPAPQPDDVYSGVATIVS 409
Query: 756 EIMKRDSNKDPSKHPQALLAKILIDQVDRKLVKQTVMTSVYGVTFVGAREQIKRRLEEKG 815
+++ D+ K S +A +L D++ R++VKQTVMTSVYGVT+VGAR QI+ L
Sbjct: 410 RLVEEDAQKGHS------IALLLRDRISRRIVKQTVMTSVYGVTYVGARAQIQNALSSTD 463
Query: 816 HITDDRQLFAAACYAAKVTLTALGEIFEAARSIMGWLGDCAKVIASENQPVRWTTPLGLP 875
+ DD + A+ Y A TL A+ E+F AR IM WL CA +IA +PV WTTPLGLP
Sbjct: 464 -LLDDDAAWQASRYLAAHTLEAVREMFVGAREIMAWLATCAGLIAQSGEPVMWTTPLGLP 522
Query: 876 VVQPYCKNERHLIRTSLQVLALQREGN--LVKIRKQRTAFPPNFVHSLDGSHMMMTAVAC 933
VVQPY + + ++T +Q + LQ + + + +QRTA PPNF+HSLD +HMM+T +
Sbjct: 523 VVQPYRRPGKQFVQTVVQKVTLQESSDDLPIHVTRQRTAHPPNFIHSLDSTHMMLTCLEM 582
Query: 934 RDAGLHFAGL 943
D G FA +
Sbjct: 583 ADQGYTFASV 592
>gi|326471406|gb|EGD95415.1| DNA-directed RNA polymerase 1A [Trichophyton tonsurans CBS 112818]
Length = 1375
Score = 466 bits (1200), Expect = e-128, Method: Compositional matrix adjust.
Identities = 287/830 (34%), Positives = 447/830 (53%), Gaps = 87/830 (10%)
Query: 166 EYREMKKRKFNLLRRRQVKQE--TEAWERMVDEYKEL--EAKMIEKRLAPNLPHIKGLFL 221
E RE+ +++ LR+ Q++++ T A ER E + + + + +E RL + +
Sbjct: 358 EERELNRKR---LRQEQLERDSLTSAIERWRKESEGVIGQRRQVEARLNA---FMYEWYQ 411
Query: 222 GWFGPLSEAIEREQKMQRTKK------QKAAYAPHIELLPADKVAVIVMHKMMGLVMAGH 275
G G + + +E ++ + KK ++ Y P + + K+A + + ++G + +
Sbjct: 412 GVLGKIKDELELAKRSESKKKLTPEESERCEYTPFLLAVGPSKLAAVTILSVLGSIGSSG 471
Query: 276 EDRCVQVVQAAVHIGMAIEQEIRIHSFLEKTKNYKRKKIIADTE---EVLSKEKELLRKR 332
D+ +++ +IG A++ E I + R+ I + + EV K + +
Sbjct: 472 IDKGIKLSSLFTNIGRAVKDEYIIET--------TRRSAIEEAQSENEVYYLNKTFRQMK 523
Query: 333 V-NSLIKSKRVMEAQKLLKNEETKPWGRDTQAKLGSRLVELLIETAYVQHPVNPADYSPP 391
V NS K + M QK K++ W T+ K+G+ L +L TA + P + D
Sbjct: 524 VYNSTGKFRSYM--QKHAKDQPPVHWPASTEIKIGALLSSMLFSTAEI--PTSHKDPITE 579
Query: 392 DV----RPAFRHRFKTILKHPGQKTTKRYGVVECDPLVLEGLDRS-AKHMLIPYVPMLVP 446
V PAF+H ++ H G V+ V+E L + + ++L ++PM+
Sbjct: 580 KVTYAKEPAFQHVYQLQKGH-------NVGYVQLHEKVVEKLRKEPSGNLLAKHLPMVST 632
Query: 447 PKKWKGYNKGGYLFLPSYVMRTHGSRKQQEALKSVTGNC-MKKVFEALDTLGSTKWRVNK 505
P+ W N+GG+L P+ V+RT Q + L++ + + ++++ L LG T W++N+
Sbjct: 633 PRPWVSNNQGGFLTQPTQVVRTRHDDAQSQYLQAASDRGDLDELYKGLTILGKTGWKINR 692
Query: 506 QVLSVLESIWVSGGNIAGLVDRNDVLIP-EKPLSEDMTEVQKWKWSVRKAKKINQERHSQ 564
V V+ W SG +A +V N L EKP +ED V+ + + +A HSQ
Sbjct: 693 PVFDVMLEAWNSGEEVANIVAANLNLAELEKPDAEDHEAVKAYYRAKTRADNKKMGNHSQ 752
Query: 565 RCDTELKLSVARRMKDEEGFYYPHNLDFRGRAYPMHPHLNHLSSDVCRGVLEFAEGRPLG 624
RC ++ +AR +E FY PHN+DFRGRAYP+ P+ N + +D CRG+L F+EGR LG
Sbjct: 753 RCYLNFQMEIARAYLNE-SFYLPHNMDFRGRAYPLPPYFNQMGADNCRGLLLFSEGRVLG 811
Query: 625 KSGLRWLKIHLANLFSGGVEKLSHDGRLAFVENHLYEIFDSAENPINGSRWWLTAEDPFQ 684
+SGLRWL+IHL+N+F G +K S R F +H+ +I DSA N + G RWWL A DPFQ
Sbjct: 812 ESGLRWLRIHLSNVF--GFDKASFQEREQFAIDHVEDILDSANNGLKGKRWWLQAADPFQ 869
Query: 685 CLAACINLSEALKSSSPHSVISHLPIHQDGSCNGLQHYAALGRNTLEAAAVNLVAGEKPA 744
CLAAC+ L AL P +SHLP+HQDGSCNGLQHYAALG + + A VNL G++P+
Sbjct: 870 CLAACVELKNALSLPDPTQYVSHLPVHQDGSCNGLQHYAALGGDAIGARQVNLEPGDRPS 929
Query: 745 DVYSEIAVRVHEIMKRDSNK-DPSKHPQALLAKILIDQVDRKLVKQTVMTSVYGVTFVGA 803
D+Y+ +A V + D+ DP +AK++ ++ RK+VKQTVMT+VYGVTF+GA
Sbjct: 930 DIYTAVAEHVKASIASDAKAGDP-------IAKLMDGKITRKVVKQTVMTNVYGVTFIGA 982
Query: 804 REQIKRRLEEK-GHITDDRQLFAAACYAAKVTLTALGEIFEAARSIMGWLGDCAKVIASE 862
Q++R++E+ + + ++ A + ++ +AL +F A I WLGDCA +
Sbjct: 983 TRQVRRQIEDHYPELAESDEISKCAVHVSRAIFSALNSMFSGAHDIQFWLGDCANRVTRS 1042
Query: 863 ---------------------------NQPVRWTTPLGLPVVQPYCKNERHLIRTSLQVL 895
N V WTTPL LPVVQPY + + I TSLQ+
Sbjct: 1043 LNPSQIEEIRKELDSPSKTDLSKKLKFNNSVIWTTPLRLPVVQPYREAKARQIPTSLQLC 1102
Query: 896 ALQ--REGNLVKIRKQRTAFPPNFVHSLDGSHMMMTAVACRDAGLHFAGL 943
++ R N V RKQ AFPPNF+HSLD +HMMM+A+ C + GL F+ +
Sbjct: 1103 TIKDIRGANEVNRRKQLQAFPPNFIHSLDATHMMMSAIKCDELGLTFSAV 1152
>gi|302498776|ref|XP_003011385.1| mitochondrial DNA-directed RNA polymerase, putative [Arthroderma
benhamiae CBS 112371]
gi|291174935|gb|EFE30745.1| mitochondrial DNA-directed RNA polymerase, putative [Arthroderma
benhamiae CBS 112371]
Length = 1305
Score = 466 bits (1199), Expect = e-128, Method: Compositional matrix adjust.
Identities = 285/840 (33%), Positives = 444/840 (52%), Gaps = 89/840 (10%)
Query: 156 KGLYKRIKLQEYREMKKRKFNLLRRRQVKQETEAW----ERMVDEYKELEAKMIEKRLAP 211
K L+ R + + K+ + L R + E W E ++ + +++EAK+
Sbjct: 280 KKLWGRTPEEREQNRKRLRQEQLERDSLTSAIERWRKESEGVIGQRRQVEAKLNA----- 334
Query: 212 NLPHIKGLFLGWFGPLSEAIEREQKMQRTKK------QKAAYAPHIELLPADKVAVIVMH 265
+ + G G + E +E ++ + KK ++ Y P + + K+A + +
Sbjct: 335 ---FMYEWYQGVLGKIKEELELAKRSESKKKLTPEESERCEYIPFLLAIGPSKLAAVTIL 391
Query: 266 KMMGLVMAGHEDRCVQVVQAAVHIGMAIEQEIRIHSFLEKTKNYKRKKIIADTE---EVL 322
++G + + D+ +++ +IG A++ E I + R+ I + + EV
Sbjct: 392 SVLGSIGSSGMDKGIKLSSLFTNIGRAVKDEYIIET--------TRRSAIEEAQSENEVY 443
Query: 323 SKEKELLRKRV-NSLIKSKRVMEAQKLLKNEETKPWGRDTQAKLGSRLVELLIETAYVQH 381
K + +V NS K + M QK K++ W T+ K+G+ L +L TA +
Sbjct: 444 YLNKTFRQMKVYNSTGKFRSYM--QKHTKDQPPVHWPASTEIKIGALLSSMLFSTAEI-- 499
Query: 382 PVNPADYSPPDV----RPAFRHRFKTILKHPGQKTTKRYGVVECDPLVLEGLDRS-AKHM 436
P + D V PAF+H ++ H G V+ V+E L + + ++
Sbjct: 500 PTSHKDPVTEKVTYAKEPAFQHVYQLQKGH-------NVGYVQLHEKVVERLRKEPSGNL 552
Query: 437 LIPYVPMLVPPKKWKGYNKGGYLFLPSYVMRTHGSRKQQEALKSVTGNC-MKKVFEALDT 495
L ++PM+ P+ W N+GG+L P+ V+RT Q + L++ + + ++++ L
Sbjct: 553 LAKHLPMVSTPRPWVSNNQGGFLTQPTQVVRTRHDDAQSQYLQAASDRGDLDELYKGLTI 612
Query: 496 LGSTKWRVNKQVLSVLESIWVSGGNIAGLVDRNDVLIP-EKPLSEDMTEVQKWKWSVRKA 554
LG T W++N+ V V+ W SG +A +V N L EKP +ED V+ + + +A
Sbjct: 613 LGKTGWKINRPVFDVMLEAWNSGEEVANIVAANLNLAELEKPDAEDHEAVKAYYRAKTRA 672
Query: 555 KKINQERHSQRCDTELKLSVARRMKDEEGFYYPHNLDFRGRAYPMHPHLNHLSSDVCRGV 614
HSQRC ++ +AR +E FY PHN+DFRGRAYP+ P+ N + +D CRG+
Sbjct: 673 DNKKMGNHSQRCYLNFQMEIARAYLNE-SFYLPHNMDFRGRAYPLPPYFNQMGADNCRGL 731
Query: 615 LEFAEGRPLGKSGLRWLKIHLANLFSGGVEKLSHDGRLAFVENHLYEIFDSAENPINGSR 674
L F+EGR LG+SGLRWL+IHL+N+F G +K S R F +H+ +I DSA N + G R
Sbjct: 732 LLFSEGRVLGESGLRWLRIHLSNVF--GFDKASFQEREQFAIDHVEDILDSANNGLKGKR 789
Query: 675 WWLTAEDPFQCLAACINLSEALKSSSPHSVISHLPIHQDGSCNGLQHYAALGRNTLEAAA 734
WWL A DPFQCLAAC+ L AL P +SHLP+HQDGSCNGLQHYAALG + + A
Sbjct: 790 WWLKAADPFQCLAACVELKNALSLPDPTKYVSHLPVHQDGSCNGLQHYAALGGDAIGARQ 849
Query: 735 VNLVAGEKPADVYSEIAVRVHEIMKRDSNK-DPSKHPQALLAKILIDQVDRKLVKQTVMT 793
VNL G++P+D+Y+ +A V + D+ DP +AK++ ++ RK+VKQTVMT
Sbjct: 850 VNLEPGDRPSDIYTAVAEHVKASIASDAKAGDP-------IAKLMDGKITRKVVKQTVMT 902
Query: 794 SVYGVTFVGAREQIKRRLEEK-GHITDDRQLFAAACYAAKVTLTALGEIFEAARSIMGWL 852
+VYGVTF+GA Q++R++E+ + + ++ A + ++ +AL +F A I WL
Sbjct: 903 NVYGVTFIGATRQVRRQIEDHYPELAESDEISKCAVHVSRAIFSALNSMFSGAHDIQFWL 962
Query: 853 GDCAKVIASE---------------------------NQPVRWTTPLGLPVVQPYCKNER 885
GDCA + N V WTTPL LPVVQPY + +
Sbjct: 963 GDCANRVTRSLNPSQIEEIRKELDSPSKTDLSKKLKFNNSVIWTTPLKLPVVQPYREAKA 1022
Query: 886 HLIRTSLQVLALQ--REGNLVKIRKQRTAFPPNFVHSLDGSHMMMTAVACRDAGLHFAGL 943
I TSLQ+ ++ R N V RKQ AFPPNF+HSLD +HMM++A+ C + GL F+ +
Sbjct: 1023 RQIPTSLQLCTIKDIRGANEVNRRKQLQAFPPNFIHSLDATHMMLSAIKCDELGLTFSAV 1082
>gi|440637074|gb|ELR06993.1| hypothetical protein GMDG_02315 [Geomyces destructans 20631-21]
Length = 1438
Score = 466 bits (1199), Expect = e-128, Method: Compositional matrix adjust.
Identities = 294/852 (34%), Positives = 440/852 (51%), Gaps = 116/852 (13%)
Query: 179 RRRQVKQETEAWERMVDEYKELEAKMIEKRLAPNL--PHIKGLFLGWFGPLSEAIER--E 234
R RQ+K E ++ VD +++ A + + L +L + W EA+E+
Sbjct: 360 RLRQIKLEEDSIISAVDRWRKESASLSKMGLDTSLQTKSLGARMWKW----QEALEQRLN 415
Query: 235 QKMQRTKKQKAA--------------YAPHIELLPADKVAVIVMHKMMGLVMAGHEDRCV 280
Q++Q K +A Y P + LP DK+A + + M + + D+ +
Sbjct: 416 QELQSIDKAEATPEKEKSQLDVERCIYGPFLRYLPTDKLAAVTILTSMQCLSSHGTDKGM 475
Query: 281 QVVQAAVHIGMAIEQEIRIHSFLEKTKNYKRKKIIADTEEVLSKEKELLRKRVNSLIKSK 340
+ + IG +E E S E +N K+ + S K L RV IK+K
Sbjct: 476 PLASVIMSIGANLEDE----SITETIRNNTTKQGWQQLNKSASAGKGLGLARV---IKNK 528
Query: 341 RVME---------------AQKLLKNEETKPWGRDTQAKLGSRLVELLIETAYVQHPVNP 385
R + A+ L ++ W +AK+GS L+ LI+TA V PV
Sbjct: 529 RTRQQLTDSLAKLVRGDSAAKHDLSDQWNTEWSATIKAKVGSYLLSALIDTAKV--PVTM 586
Query: 386 ADYSPPD----VRPAFRHRFKTILKHPGQKTTKRYGVVECDPLVLEGLDRSAKH-MLIPY 440
+ + ++PAF H + K K+ G++ + ++ L R H +L +
Sbjct: 587 ENTKTQELLTQIQPAFSHTHQY-------KIGKKTGMILANRALVASLKREPVHSLLAKH 639
Query: 441 VPMLVPPKKWKGYNKGGYLFLPSYVMRTHGSRKQQEALK--SVTGNCMKKVFEALDTLGS 498
+PM+ P+ W +N+GG++ P+ +R G K Q + ++ M+++F+ LD LG
Sbjct: 640 LPMVAEPEPWSEFNQGGFISHPAKAVRIKGGDKNQRQYQEAAIRRGDMEQMFKGLDVLGK 699
Query: 499 TKWRVNKQVLSVLESIWVSGGNIAGLVDRNDVL--IPEKPLSEDMTEVQKWKWSVRKAKK 556
T W +N+ V + W +G IA L PE P S+D TE +KW S++ +
Sbjct: 700 TSWVINRPVFDTMLEAWNTGEAIANFPAEEPKLEYPPEPPASKDPTERRKWIRSLKTIEN 759
Query: 557 INQERHSQRCDTELKLSVARRMKDEEGFYYPHNLDFRGRAYPMHPHLNHLSSDVCRGVLE 616
HS RC +L +AR ++ EE FY+PHNLDFRGRAYP+ P+LNH+ +D CRG+L+
Sbjct: 760 TRSGFHSARCFQNFQLEIARSLR-EEKFYFPHNLDFRGRAYPIPPYLNHMGADHCRGLLK 818
Query: 617 FAEGRPLGKSGLRWLKIHLANLFSGGVEKLSHDGRLAFVENHLYEIFDSAENPINGSRWW 676
F +GR LG++GL+WL++HLAN+ G +K S R + +H+ +I+DSA NP+NG RWW
Sbjct: 819 FGKGRELGEAGLKWLRVHLANIH--GHDKASLKEREQYTVDHIDDIYDSAMNPLNGRRWW 876
Query: 677 LTAEDPFQCLAACINLSEALKSSSPHSVISHLPIHQDGSCNGLQHYAALGRNTLEAAAVN 736
L AEDP+QCLAAC+ L AL S P +SHLP+HQDG+CNGLQHYAALG + A VN
Sbjct: 877 LDAEDPWQCLAACLELKNALDSGDPTKFVSHLPVHQDGTCNGLQHYAALGGDEWGARQVN 936
Query: 737 LVAGEKPADVYSEIAVRVHEIMKRDSNKDPSKHPQALLAKILIDQVDRKLVKQTVMTSVY 796
L G++PADVY+ +A V+E M D K+ +K A L ++ RK+VKQTVMT+VY
Sbjct: 937 LEPGDRPADVYNAVAELVNEKMAVD-RKNGNK-----CAIWLEGKIKRKVVKQTVMTNVY 990
Query: 797 GVTFVGAREQIKRRLEEKGHITDDRQLFAAAC---YAAKVTLTALGEIFEAARSIMGWLG 853
GVT++GA+ Q++++L + F + Y A ALG +F A I WLG
Sbjct: 991 GVTYIGAQAQVRKQLVAAHTDLPNEGSFNVSLLSGYVATKIFEALGTMFRGAHDIQFWLG 1050
Query: 854 DCAKVIASENQP----------------------------------------VRWTTPLG 873
+CA I++ P V WTTPL
Sbjct: 1051 ECASRISTSVTPQQLDRLEHLHEEALDQRVPRLNRYHISMVDAEQQLQFKSSVIWTTPLR 1110
Query: 874 LPVVQPYCKNERHLIRTSLQVLALQR--EGNLVKIRKQRTAFPPNFVHSLDGSHMMMTAV 931
+P+VQPY + ++T+LQ + + + V RKQ FPPNFVHSLD +HMM++A+
Sbjct: 1111 MPIVQPYRATKSRTVQTNLQQITISEPHRSDPVSKRKQLQGFPPNFVHSLDATHMMLSAL 1170
Query: 932 ACRDAGLHFAGL 943
C +AGL FA +
Sbjct: 1171 KCDEAGLSFAAV 1182
>gi|365760960|gb|EHN02641.1| Rpo41p [Saccharomyces cerevisiae x Saccharomyces kudriavzevii VIN7]
Length = 1357
Score = 466 bits (1198), Expect = e-128, Method: Compositional matrix adjust.
Identities = 301/826 (36%), Positives = 441/826 (53%), Gaps = 113/826 (13%)
Query: 177 LLRRRQVKQETEAWERMVDEYKELEAKMIEKRLAPNLPHIKGLFLGWFG---PL------ 227
+L R + E W+ +E K IEK L L W+ PL
Sbjct: 422 VLENRATEAARERWKHDFEEAKARGDISIEKNLNAKL-------WKWYNNMLPLVQEEIN 474
Query: 228 ---SEAIER-----EQKMQRTKKQKAAYAPHIELLPADKVAVIVMHKMMGLVMAGHEDRC 279
S ++ER ++ + + + + Y P++ L+ K+ VI + +++ L G
Sbjct: 475 HCKSLSLERPSPSDKKHLNKVETNRLDYGPYLTLIDPGKMCVITILELLKLNSTGGVIEG 534
Query: 280 VQVVQAAVHIGMAIEQEIRIHSFLEKTKNYKRKKIIADTEEVLSKEKELLRKRVNSLIKS 339
++ +A + +G AIE E R +E+VL E + R VN
Sbjct: 535 MRTARAVISVGKAIEMEFR-------------------SEQVLKSESQTFRD-VN----- 569
Query: 340 KRVMEAQKLLKN----------EETKP-WGRDTQAKLGSRLVELLIETA--YVQ--HPVN 384
K+ E +KL++N E++K W ++ +AK+GS L+ +LI A +VQ P+
Sbjct: 570 KKSPEFKKLVQNAKSVFRSSQIEQSKILWPQNIRAKIGSVLISMLIHVAKVFVQGVDPIT 629
Query: 385 PADYSPPDVRPAFRHRFKTILKHPGQKTTKRYGVVECDPLVLEGLD--RSAKHMLIPYVP 442
A PAF H ++ H G K GV++ ++ L+ R + +P
Sbjct: 630 KAKVHGE--APAFAHGYQY---HNGSK----LGVLKIHKTLIHQLNGERLIASVQPQLLP 680
Query: 443 MLVPPKKWKGYNKGGYLFLPSYVMRTHGSRKQQEALKSVTGNC-MKKVFEALDTLGSTKW 501
MLV PK W + GGY + S ++RT S +Q LK+ + N + +V++ L+ LG T W
Sbjct: 681 MLVEPKPWVNWRSGGYHYTQSTLLRTKDSPEQVAYLKAASDNGDIDRVYDGLNVLGDTPW 740
Query: 502 RVNKQVLSVLESIWVSGGNIAGLVDRND--VLIPEKPLSEDMTEVQKWKWSVRK-AKKIN 558
VN++V V+ +W G + + + VL P + D + ++ WK V+ A K +
Sbjct: 741 TVNRKVFDVVSQVWNRGESFLDIPSAQEEMVLPLAPPRNSDPSILRAWKLQVKTIANKFS 800
Query: 559 QERHSQRCDTELKLSVARRMKDEEGFYYPHNLDFRGRAYPMHPHLNHLSSDVCRGVLEFA 618
+R S RCDT KL +AR E+ Y+PHNLDFRGRAYP+ PH NHL +D+ RG+L F
Sbjct: 801 SDR-SNRCDTNYKLEIARAFLGEK-LYFPHNLDFRGRAYPLSPHFNHLGNDMSRGLLIFW 858
Query: 619 EGRPLGKSGLRWLKIHLANLFSGGVEKLSHDGRLAFVENHLYEIFDSAENPINGSRWWLT 678
G+ LG SGL+WLKIHL+NLF G +KL + R+AF E+HL ++ DSAENP++G RWW T
Sbjct: 859 HGKKLGPSGLKWLKIHLSNLF--GFDKLRLEDRVAFTESHLNDVKDSAENPLSGERWWTT 916
Query: 679 AEDPFQCLAACINLSEALKSSSPHSVISHLPIHQDGSCNGLQHYAALGRNTLEAAAVNLV 738
A+ P+Q LA C L+E +K +P ISH P+HQDG+CNGLQHYAALG + A VNLV
Sbjct: 917 ADKPWQALATCFELNEVMKMDNPEEFISHQPVHQDGTCNGLQHYAALGGDVEGATQVNLV 976
Query: 739 AGEKPADVYSEIAVRVHEIMKRDSNKDPSKHPQALLAKILIDQVDRKLVKQTVMTSVYGV 798
+KP DVY+ +A V + ++ + K AKIL D++ RK+VKQTVMT+VYGV
Sbjct: 977 PNDKPQDVYAHVARLVQKRLEIAAEKGDEN------AKILKDKITRKVVKQTVMTNVYGV 1030
Query: 799 TFVGAREQIKRRLEEKGHITDDR-QLFAAACYAAKVTLTALGEIFEAARSIMGWLGDCAK 857
T+VGA QI ++L I DDR + + Y K A+ E+F +A I WLG+ AK
Sbjct: 1031 TYVGATFQIAKQLSP---IFDDRKESLDYSKYLTKHVFGAIRELFHSAHLIQDWLGESAK 1087
Query: 858 VIASE-------------NQP-----VRWTTPLGLPVVQPYCKNERHLIRTSLQVLALQR 899
I+ N+P V WTTPLGLP+VQPY + + + T+LQ + +
Sbjct: 1088 RISKSIRLDVDEKSFKNGNKPDFMSSVIWTTPLGLPIVQPYREESKKQVETNLQTVFISD 1147
Query: 900 --EGNLVKIRKQRTAFPPNFVHSLDGSHMMMTAVACRDAGLHFAGL 943
N V R+Q+ PPNF+HSLD SHM+++A C GL FA +
Sbjct: 1148 PFAVNPVNARRQKAGLPPNFIHSLDASHMLLSAAECGKQGLDFASV 1193
>gi|358055118|dbj|GAA98887.1| hypothetical protein E5Q_05575 [Mixia osmundae IAM 14324]
Length = 1375
Score = 466 bits (1198), Expect = e-128, Method: Compositional matrix adjust.
Identities = 298/845 (35%), Positives = 445/845 (52%), Gaps = 114/845 (13%)
Query: 178 LRRRQVKQETEAWERMVDEYKELEAKM---IEKRLAPNLPHIKGLFLGWFGPLSEAIERE 234
L RQ + E A + V +++ KM + +R++ ++ L GW L+ + R
Sbjct: 396 LYERQRQLEDSAMQAAVVQFQTEREKMNTEVAQRVSMQQRSLQSLMTGWIEELTVVLTRV 455
Query: 235 QKMQR--------TKKQ------------KAAYAPHIELLPADK-----VAVIVMHKMMG 269
Q+ R T K+ +AA + LLP DK V+V++ H G
Sbjct: 456 QEQMRLLIDSDAVTTKETVIEGCKIFATDRAADDIYFLLLPPDKLAYLTVSVLLSHNTPG 515
Query: 270 LVMAGHEDRCVQVVQAAVHIGMAIEQEIRIHSFLEKTKNYKRKKIIADTEEVLSKEKELL 329
M RCV MAI + + + + K + R ++ V E
Sbjct: 516 AAMQ-KVTRCV----------MAIGKAVEVEHYAMKLQESHRLELADALHAVREAEA--- 561
Query: 330 RKRVNSLIKSKRVMEAQKLLKNEETKP-----WGRDTQAKLGSRLVELLIETAYVQHPVN 384
N + +S+ V + ++ + W T+A++G+ + L ETA +Q
Sbjct: 562 ---ANGVTESRVVARIWRDVRARQGDSSREVFWSHQTRARIGAMCLHFLCETAKIQRSAV 618
Query: 385 PADYSPPDVRPAFRHRFKTILKHPGQKTTKRYGVVECDPLVLEGLDR-SAKHMLIP-YVP 442
+++PAF +T GQK G+++ + V E LD+ S L P Y+P
Sbjct: 619 IDGQEIIEIQPAF---VQTYQFSAGQKI----GIIKFNAAVTERLDKDSMLSTLTPRYLP 671
Query: 443 MLVPPKKWKGYNKGGYLFLPSYVMRTHGSRKQQEALKSVTGNC-MKKVFEALDTLGSTKW 501
MLVPP+ W +NKG YL P V+R S +Q LK + + + + F +LD LGST W
Sbjct: 672 MLVPPRPWTAHNKGAYLMHPVSVLRIKDSMEQTAYLKQASDSGQLDEAFASLDYLGSTAW 731
Query: 502 RVNKQVLSVLESIWVSGGNIAGL--VD-RNDVLIPEKPLSEDMTEVQK--WKWSVRKAKK 556
VN+ V V+ S W SG I G+ D N + PE P + Q+ + V+ A+
Sbjct: 732 NVNRDVFGVIASAWNSGLTIGGIPVADPLNAIKDPEPPAGGFTSPRQQDTHRAEVKAAEM 791
Query: 557 INQERHSQRCDTELKLSVARRMKDEEGFYYPHNLDFRGRAYPMHPHLNHLSSDVCRGVLE 616
++ +S RCD KL +AR +E FY+PHN+DFRGRAYP+ P+L+H+ D+CRG+L
Sbjct: 792 QRRQHYSIRCDLNYKLEIARAYLNER-FYFPHNMDFRGRAYPIPPNLSHIGDDLCRGLLT 850
Query: 617 FAEGRPLGKSGLRWLKIHLANLFSGGVEKLSHDGRLAFVENHLYEIFDSAENPINGSRWW 676
FAE + LG +GLRWL +HLAN+F G +K S R F ++HL +IFDSA+ P++G+RWW
Sbjct: 851 FAERKRLGATGLRWLHVHLANMF--GFDKASLAAREQFAKDHLTDIFDSADKPLDGARWW 908
Query: 677 LTAEDPFQCLAACINLSEALKSSSPHSVISHLPIHQDGSCNGLQHYAALGRNTLEAAAVN 736
L AE+P+QCLA C LS+AL+S P S LP+ QDGSCNGLQHYAALG + A VN
Sbjct: 909 LKAEEPWQCLATCFELSKALRSPVPEDYRSSLPVQQDGSCNGLQHYAALGGDMAGAGQVN 968
Query: 737 LVAGEKPADVYSEIAVRVHEIMKRDS-NKDPSKHPQALLAKILIDQVDRKLVKQTVMTSV 795
L+AG+ P+DVY+ + V +++D+ NK+ LA L ++ RK++KQTVMT+V
Sbjct: 969 LIAGDAPSDVYTGVCNLVIGAVEQDAANKNE-------LALHLKGKITRKVIKQTVMTTV 1021
Query: 796 YGVTFVGAREQIKRRLEEKGHITDDRQLFAAACYAAKVTLTALGEIFEAARSIMGWLGDC 855
YGVT++GA QI+R+L+++G + D A Y + TL ++G +F A +I WL C
Sbjct: 1022 YGVTYIGASRQIERQLKDRGDV-DAEVRHKCALYLTEKTLQSIGTLFAGAAAIQLWLTTC 1080
Query: 856 AKVIA-----------------SENQPVR------------------WTTPLGLPVVQPY 880
++I+ SE ++ WTTP+GLPV QPY
Sbjct: 1081 GRLISKSIPGDRHELVKATQSKSEQNKLKKKQSSKDMLAREQMTTVVWTTPIGLPVAQPY 1140
Query: 881 CKNERHLIRTSLQVLALQ--REGNLVKIRKQRTAFPPNFVHSLDGSHMMMTAVACRDAGL 938
K +R ++T +Q + + + V R+Q +AFPPNF+HSLD SH+M+TA C+ GL
Sbjct: 1141 RKQQRKQVKTVVQTVFISDPQTPTQVDSRQQTSAFPPNFIHSLDASHLMLTAGRCKRRGL 1200
Query: 939 HFAGL 943
FA +
Sbjct: 1201 TFASV 1205
>gi|258573307|ref|XP_002540835.1| predicted protein [Uncinocarpus reesii 1704]
gi|237901101|gb|EEP75502.1| predicted protein [Uncinocarpus reesii 1704]
Length = 1231
Score = 466 bits (1198), Expect = e-128, Method: Compositional matrix adjust.
Identities = 285/811 (35%), Positives = 432/811 (53%), Gaps = 99/811 (12%)
Query: 198 KELEAKMIEKRLAPNLPHIKGLFLGWFGPLSEAIERE--------QKMQRT--KKQKAAY 247
KE E + + L P+ + L W L +I+ E +K ++T + Y
Sbjct: 233 KESEDRASKTGLGPSEKKMGALLWDWQQCLLTSIQSEMQSALRAQEKERKTPEDNDRCEY 292
Query: 248 APHIELLPADKVAVIVMHKMMGLVMAGHEDRCVQVVQAAVHIGMAIEQEIRIHSFLEKTK 307
AP + + A+K++ I + M + D+ +++ + + +G A+++E E
Sbjct: 293 APFLSTIGAEKLSAITILATMNALGRSGMDKGIRLTRLIMVLGKAVQEEYLADRIRESAY 352
Query: 308 NYKRKKIIADTEEVLSKEKELLRKRVNSLIKSKRVMEAQKLLK--NEETKP--WGRDTQA 363
D+ S K V LI SK + + L++ NE +P W T+A
Sbjct: 353 ---------DSAHTNSANSANRAKMVEKLIASKDHSKWRYLVRKYNESHEPVNWSAATEA 403
Query: 364 KLGSRLVELLIETAYVQHPVNPADYSPPDVR-------PAFRHRFKTILKHPGQKTTKRY 416
K+G+ L +L + V P ++ P+ R PAFRH ++ +
Sbjct: 404 KIGALLASMLFSSTKV-----PVEHKNPETREVTVSKQPAFRHVYQL-------EKGFSI 451
Query: 417 GVVECDPLVLEGLDRS-AKHMLIPYVPMLVPPKKWKGYNKGGYLFLPSYVMRTHGSRKQQ 475
G V+ ++E L R A H+L ++PM+ PP W Y+ GG+L PS V+R Q
Sbjct: 452 GYVQLHDSIVEKLGREPASHLLAKHLPMVSPPAPWSSYHHGGFLEQPSLVIRARPDNALQ 511
Query: 476 -EALKSVT--GNCMKKVFEALDTLGSTKWRVNKQVLSVLESIWVSGGNIAGL-VDRNDVL 531
+ +K+ + G+ + ++F L+ LG T W++N+ V V+ W SG +A + ++
Sbjct: 512 LQYVKAASRRGD-LDEIFAGLNVLGKTGWQINRPVFDVMLEAWNSGKELADIPAAEPNLP 570
Query: 532 IPEKPLSEDMTEVQKWKWSVRKAKKINQER---HSQRCDTELKLSVARRMKDEEGFYYPH 588
PEKP + D ++ + R ++ +R HSQRC L+L VAR E FY PH
Sbjct: 571 EPEKPDTGDSGSLKAY---YRAKAVVDNKRSGFHSQRCFQNLQLEVARAYIGET-FYLPH 626
Query: 589 NLDFRGRAYPMHPHLNHLSSDVCRGVLEFAEGRPLGKSGLRWLKIHLANLFSGGVEKLSH 648
N+DFRGRAYP+ P+ N + SD+CRG+L F+EGR LG+ GL+WLKIHLAN++ G +K S
Sbjct: 627 NMDFRGRAYPLPPYFNQMGSDMCRGLLLFSEGRQLGERGLKWLKIHLANVY--GFDKASF 684
Query: 649 DGRLAFVENHLYEIFDSAENPINGSRWWLTAEDPFQCLAACINLSEALKSSSPHSVISHL 708
D R F +HL ++ DSAE ++G RWWL A DPFQCLAACI L AL + P +SHL
Sbjct: 685 DERAQFSMDHLDDVIDSAEKGLHGRRWWLQAADPFQCLAACIELKNALACADPTKFVSHL 744
Query: 709 PIHQDGSCNGLQHYAALGRNTLEAAAVNLVAGEKPADVYSEIAVRVHEIMKRDSNKDPSK 768
PIHQDGSCNGLQHYAALG + + A VNL ++P+D+YS +A VH+ + +D+
Sbjct: 745 PIHQDGSCNGLQHYAALGGDIIGARQVNLEPSDRPSDIYSAVAEHVHQSIVQDAASG--- 801
Query: 769 HPQALLAKILIDQVDRKLVKQTVMTSVYGVTFVGAREQIKRRLEE-KGHITDDRQLFAAA 827
+ L ++L D+++RK+VKQTVMT+VYGVTF+GA Q++++L+E + ++ + A
Sbjct: 802 ---SQLGELLKDKINRKVVKQTVMTNVYGVTFLGAIRQVQKQLDEIYPDLAENNNVNKIA 858
Query: 828 CYAAKVTLTALGEIFEAARSIMGWLGDCAKVIASENQP---------------------- 865
Y + AL +F A I WLGDCA I P
Sbjct: 859 TYITRKIFAALSSMFTGAHEIQFWLGDCANRITQSLSPDQIEAVIEARNAPATAAKKPKK 918
Query: 866 -----------VRWTTPLGLPVVQPYCKNERHLIRTSLQVLALQR--EGNLVKIRKQRTA 912
V WTTPL LPVVQPY + + + T++Q L+++ ++V RKQ A
Sbjct: 919 KDDLSKRFRSTVIWTTPLKLPVVQPYREAKVRRVTTAIQSLSIKEPHSDDIVSRRKQLQA 978
Query: 913 FPPNFVHSLDGSHMMMTAVACRDAGLHFAGL 943
FPPNF+HSLD +HMM++A+ C + GL F+ +
Sbjct: 979 FPPNFIHSLDATHMMLSAIKCDELGLSFSAV 1009
>gi|302655337|ref|XP_003019459.1| mitochondrial DNA-directed RNA polymerase, putative [Trichophyton
verrucosum HKI 0517]
gi|291183183|gb|EFE38814.1| mitochondrial DNA-directed RNA polymerase, putative [Trichophyton
verrucosum HKI 0517]
Length = 1305
Score = 465 bits (1196), Expect = e-128, Method: Compositional matrix adjust.
Identities = 281/836 (33%), Positives = 442/836 (52%), Gaps = 81/836 (9%)
Query: 156 KGLYKRIKLQEYREMKKRKFNLLRRRQVKQETEAW----ERMVDEYKELEAKMIEKRLAP 211
K L+ R + + K+ + L R + E W E ++ + +++EAK+
Sbjct: 280 KKLWGRTPEEREQNRKRLRQEQLERDSLTSAIERWRKESEGVIGQRRQVEAKLNA----- 334
Query: 212 NLPHIKGLFLGWFGPLSEAIEREQKMQRTKK------QKAAYAPHIELLPADKVAVIVMH 265
+ + G G + E +E ++ + KK ++ Y P + + K+A + +
Sbjct: 335 ---FMYEWYQGVLGKIKEELELAKRSESKKKLTPEESERCEYIPFLLAIGPSKLAAVTIL 391
Query: 266 KMMGLVMAGHEDRCVQVVQAAVHIGMAIEQEIRIHSFLEKTKNYKRKKIIADTEEVLSKE 325
++G + + D+ +++ +IG A++ E +E T+ ++ ++ E +
Sbjct: 392 SVLGSIGSSGMDKGIKLSSLFTNIGRAVKDEY----IIETTRRSAVEEAQSENEVYYLNK 447
Query: 326 KELLRKRVNSLIKSKRVMEAQKLLKNEETKPWGRDTQAKLGSRLVELLIETAYVQHPVNP 385
K NS K + M QK K++ W T+ K+G+ L +L TA + P +
Sbjct: 448 TFRQMKVYNSTGKFRSYM--QKHTKDQPPVHWPASTEIKIGALLSSMLFSTAEI--PTSH 503
Query: 386 ADYSPPDV----RPAFRHRFKTILKHPGQKTTKRYGVVECDPLVLEGLDRS-AKHMLIPY 440
D V PAF+H ++ H G V+ V+E L + + ++L +
Sbjct: 504 KDPVTEKVTYAKEPAFQHVYQLQKGH-------NVGYVQLHEKVVERLRKEPSGNLLAKH 556
Query: 441 VPMLVPPKKWKGYNKGGYLFLPSYVMRTHGSRKQQEALKSVTGNC-MKKVFEALDTLGST 499
+PM+ P+ W N+GG+L P+ V+RT Q + L++ + + ++++ L LG T
Sbjct: 557 LPMVSTPRPWVSNNQGGFLTQPTQVVRTRHDDAQSQYLQAASDRGDLDELYKGLTILGKT 616
Query: 500 KWRVNKQVLSVLESIWVSGGNIAGLVDRNDVLIP-EKPLSEDMTEVQKWKWSVRKAKKIN 558
W++N+ V V+ W SG +A +V N L EKP ++D V+ + + +A
Sbjct: 617 GWKINRPVFDVMLEAWNSGEEVANIVAANLNLAELEKPDADDHEAVKAYYRAKTRADNKK 676
Query: 559 QERHSQRCDTELKLSVARRMKDEEGFYYPHNLDFRGRAYPMHPHLNHLSSDVCRGVLEFA 618
HSQRC ++ +AR +E FY PHN+DFRGRAYP+ P+ N + +D CRG+L F+
Sbjct: 677 MGNHSQRCYLNFQMEIARAYLNE-SFYLPHNMDFRGRAYPLPPYFNQMGADNCRGLLLFS 735
Query: 619 EGRPLGKSGLRWLKIHLANLFSGGVEKLSHDGRLAFVENHLYEIFDSAENPINGSRWWLT 678
EGR LG+SGLRWL+IHL+N+F G +K S R F +H+ +I DSA N + G RWWL
Sbjct: 736 EGRVLGESGLRWLRIHLSNVF--GFDKASFQEREQFAIDHVDDILDSANNGLKGKRWWLQ 793
Query: 679 AEDPFQCLAACINLSEALKSSSPHSVISHLPIHQDGSCNGLQHYAALGRNTLEAAAVNLV 738
A DPFQCLAAC+ L AL P +SHLP+HQDGSCNGLQHYAALG + + A VNL
Sbjct: 794 AADPFQCLAACVELKNALSLPDPTQYVSHLPVHQDGSCNGLQHYAALGGDAIGARQVNLE 853
Query: 739 AGEKPADVYSEIAVRVHEIMKRDSNK-DPSKHPQALLAKILIDQVDRKLVKQTVMTSVYG 797
G++P+D+Y+ +A V + D+ DP +AK++ ++ RK+VKQTVMT+VYG
Sbjct: 854 PGDRPSDIYTAVAEHVKASIASDAKAGDP-------IAKLMDGKITRKVVKQTVMTNVYG 906
Query: 798 VTFVGAREQIKRRLEEK-GHITDDRQLFAAACYAAKVTLTALGEIFEAARSIMGWLGDCA 856
VTF+GA Q++R++E+ + + ++ A + ++ +AL +F A I WLGDCA
Sbjct: 907 VTFIGATRQVRRQIEDHYPELAESDEISKCAVHVSRAIFSALNSMFSGAHDIQFWLGDCA 966
Query: 857 KVIASE---------------------------NQPVRWTTPLGLPVVQPYCKNERHLIR 889
+ N V WTTPL LPVVQPY + + I
Sbjct: 967 NRVTRSLNPSQIEEIRKELDSPSKTDLSKKLKFNNSVIWTTPLKLPVVQPYREAKARQIP 1026
Query: 890 TSLQVLALQ--REGNLVKIRKQRTAFPPNFVHSLDGSHMMMTAVACRDAGLHFAGL 943
TSLQ+ ++ R N V RKQ AFPPNF+HSLD +HMM++A+ C + GL F+ +
Sbjct: 1027 TSLQLCTIKDIRGANEVNRRKQLQAFPPNFIHSLDATHMMLSAIKCDELGLTFSAV 1082
>gi|392575571|gb|EIW68704.1| hypothetical protein TREMEDRAFT_69156 [Tremella mesenterica DSM 1558]
Length = 1229
Score = 465 bits (1196), Expect = e-128, Method: Compositional matrix adjust.
Identities = 290/801 (36%), Positives = 437/801 (54%), Gaps = 104/801 (12%)
Query: 222 GWFGPLSEAIEREQKMQRTKKQKAAYAPH----------------------IELLPADKV 259
GW G L+E + + K+ TK + PH + +LP +K+
Sbjct: 245 GWLGELTERLRQSIKVLATKDE--GVTPHQRDVLPTSFKAAGMQNQYLLLYLTVLPPEKL 302
Query: 260 AVIVMHKMMGLVMAGHEDRCVQVVQAAVHIGMAIEQEIR---IHSFLEKTKNYKRKKIIA 316
A+I + ++M + +G ++ ++ + +G A+E E R I S K I
Sbjct: 303 ALITILEVMRMSGSGGIVDGMKALRGIMAVGKAVETEYRAETIKSVGGVDSPLWLKTIDP 362
Query: 317 DTEEVLSKEKELLRKRVNSLIKSK---RVMEAQKL----LKNEETKPWGRDTQAKLGSRL 369
T++ ++L+ + N + +S+ +Q L L+ T W A LG L
Sbjct: 363 QTQK---PSRQLISQVWNQVGQSRHRPNKSTSQDLKDTGLEAVWTPAWSPLVHASLGGFL 419
Query: 370 VELLIETAYVQHPVNPADYSPPDV--RPAFRHRFKTILKHPGQKTTKRYGVVECDPLVLE 427
V+ L+ TA V D V +PAF H ++ + K+ GV++ +P+V
Sbjct: 420 VDALLSTAKVVREATDPDTGEKIVEEQPAFAHEYEYLYG-------KKLGVIKLNPVVAA 472
Query: 428 GLDRSAKHMLI--PYVPMLVPPKKWKGYNKGGYLFLPSYVMRTHGSRKQQEAL-KSVTGN 484
L R + H++I ++PMLVPPK W + GGYL VMR S +QQ L K+
Sbjct: 473 RLARDSLHVVIHPRHLPMLVPPKPWTSQDDGGYLVHRVPVMRYKESAEQQIYLRKAFEAG 532
Query: 485 CMKKVFEALDTLGSTKWRVNKQVLSVLESIWVSGGNIAGLVDRN-----DVLIPEKPLSE 539
++ VF LD L T W +N++V V+ S W SG IA L D +P P
Sbjct: 533 HLEPVFHGLDVLSGTPWTINRKVFDVVLSAWNSGDAIADLPASQEKAQYDFPVPPDP--- 589
Query: 540 DMTEVQ-KWKWSVRKAKKINQER--HSQRCDTELKLSVARRMKDEEGFYYPHNLDFRGRA 596
D +E Q + + VR + Q+R H++RC L +AR ++ FY PHN+DFRGRA
Sbjct: 590 DNSEPQDRTSYVVRIRSVLAQQRKDHAERCKFNYNLEIARSYLNDT-FYLPHNMDFRGRA 648
Query: 597 YPMHPHLNHLSSDVCRGVLEFAEGRPLGKSGLRWLKIHLANLFSGGVEKLSHDGRLAFVE 656
YP+ PHL+ + D+CRG+L+F E R LG++GL+WL+IHLAN++ G +K S + R F
Sbjct: 649 YPIPPHLSPVGDDLCRGLLQFGEKRTLGRAGLKWLQIHLANVY--GYDKASFEERAQFAV 706
Query: 657 NHLYEIFDSAENPINGSRWWLTAEDPFQCLAACINLSEALKSSSPHSVISHLPIHQDGSC 716
+H EIF+SA+NP++G RWWL AEDP+QCLA+C +L+ AL+S +P + S LPIHQDG+C
Sbjct: 707 DHEKEIFNSADNPLDGQRWWLQAEDPWQCLASCFDLAAALRSENPEAYESALPIHQDGTC 766
Query: 717 NGLQHYAALGRNTLEAAAVNLVAGEKPADVYSEIAVRVHEIMKRDSNKDPSKHPQALLAK 776
NG+QHYAALG + A AVNL G++PAD+Y+ +A V++ ++ D K +A+
Sbjct: 767 NGMQHYAALGGDVNGARAVNLENGDRPADIYTGVADLVNKAIEAD------KKVGVPMAQ 820
Query: 777 ILIDQVDRKLVKQTVMTSVYGVTFVGAREQIKRRLEEKGHITDDRQLFAAACYAAKVTLT 836
+ + ++RK+VKQTVMT+VYGVTFVGAREQI ++L + I QL+ + Y AK L+
Sbjct: 821 FITEPLERKVVKQTVMTTVYGVTFVGAREQIAKQLSLRTDIPPG-QLYQLSIYVAKAVLS 879
Query: 837 ALGEIFEAARSIMGWLGDCAKVIASENQPVR----------------------------- 867
++G++F A+ IM +L CA++I+ P R
Sbjct: 880 SIGDLFVGAKHIMEFLTICARLISRSIPPSRVAEASIRLHKTDSKGRVRLYDRLPKELMT 939
Query: 868 ---WTTPLGLPVVQPYCKNERHLIRTSLQVLALQREGNLVKI--RKQRTAFPPNFVHSLD 922
WTTPLGLPVVQPY K + + T+LQ + + ++ +KQ +AFPPNF+HSLD
Sbjct: 940 SVIWTTPLGLPVVQPYRKPTKKQVMTALQSVYISDPNAPAEVSPQKQASAFPPNFIHSLD 999
Query: 923 GSHMMMTAVACRDAGLHFAGL 943
+HM++TA C+ G+ FA +
Sbjct: 1000 ATHMLLTAYKCKQNGITFASV 1020
>gi|66827985|ref|XP_647347.1| DNA-dependent RNA polymerase [Dictyostelium discoideum AX4]
gi|13991700|gb|AAK51466.1|AF361480_1 DNA-dependent RNA polymerase RpmA [Dictyostelium discoideum]
gi|15004256|gb|AAK73754.1| T3/T7 bacteriophage-like mitochondrial RNA polymerase
[Dictyostelium discoideum]
gi|60475225|gb|EAL73160.1| DNA-dependent RNA polymerase [Dictyostelium discoideum AX4]
Length = 950
Score = 465 bits (1196), Expect = e-128, Method: Compositional matrix adjust.
Identities = 287/780 (36%), Positives = 430/780 (55%), Gaps = 62/780 (7%)
Query: 178 LRRRQVKQETEAWERMVDEYKELEAKMIEKRLAPNLPHIKGLFLGWFGPLSEAIEREQKM 237
LR+ Q E EA + V Y++L K + I+ + + W L+E + QK
Sbjct: 150 LRKIQTLLEFEAIDDAVTRYRDLMLDSKGKSFVTSFKSIRDVLMQWNEGLTEKV---QKD 206
Query: 238 QRTKKQKAAYAPHIELLPADKVAVIVMHKMMG-LVMAGHEDRCVQVVQAAVHIGMAIEQE 296
TK Q AA+ ++ + K + ++ ++G V+ D ++ + + + E +
Sbjct: 207 LATKDQDAAWVTILKTVSVQKCILKSLNIIVGKSVLKDRYDFATNIIIETIGVSVYAEYK 266
Query: 297 IRIHSFLEKTKNYKRKKIIADTEEVLSKEKELLRKRVNSLIKSKRVMEAQKLLKNEETKP 356
I E K K+I ++ L K L ++ ++ P
Sbjct: 267 SLIVKKKEPKTYKKISKLIPNS--ALKKFYNLSTDNLDVIV----------------LPP 308
Query: 357 WGRDTQAKLGSRLVELLIETAYVQHPVNPADYSPPDVRPAFRHRFKTILKH--PGQKTTK 414
+D + +G LV + + +Q + D S PAF TI H G +TTK
Sbjct: 309 ESKDIFS-IGEFLVSQVFKHCTIQESLG-EDGSKQ--SPAF-----TIQSHYANGVRTTK 359
Query: 415 RYGVVECDPLVLEG--LDRSAKHMLIPYVPMLVPPKKWKGYNKGGYLFLPSYVMRTHGSR 472
L+ G + + L P M++ P W +G YL +MRT+GS
Sbjct: 360 VIPHKNIFKLIEAGHEIRETGGARLFP---MVIKPLPWITPTEGPYLHYKVPIMRTNGSA 416
Query: 473 KQQEALKSVTGNCMKKVFEALDTLGSTKWRVNKQVLSVLESIWVSGGNIAGLVDRNDVLI 532
Q L+++ + M ++ AL+ LG T W +N+ + +V+ W +GGNI + R D
Sbjct: 417 MQ---LRTLVDSDMSLIYRALNILGETPWVINRDLYNVILEAWANGGNIGDIPKRTDFEY 473
Query: 533 PEKPLSEDMT---EVQKWKWSV-RKAKKINQERHSQRCDTELKLSVARRMKDEEGFYYPH 588
PE +S+DM E +K + ++ K +N HS RCDT KL VAR+ D Y+PH
Sbjct: 474 PE--ISDDMLFDHEARKELYKKEQRIKSLNFNLHSLRCDTNYKLEVARKFLDHT-LYFPH 530
Query: 589 NLDFRGRAYPMHPHLNHLSSDVCRGVLEFAEGRPLGKSGLRWLKIHLANLFSGGVEKLSH 648
N+DFRGR+YP+ PHLNHL SD CR +L+F + PLG+ GL WLKIH+ANL+ GV+K+
Sbjct: 531 NIDFRGRSYPIPPHLNHLGSDFCRSLLKFEKSLPLGEKGLEWLKIHVANLY--GVDKIPL 588
Query: 649 DGRLAFVENHLYEIFDSAENPINGSRWWLTAEDPFQCLAACINLSEALKSSSPHSVISHL 708
+ RLAF E ++ IFDS ++P+NG++WWL A++P+Q LAAC+ L++A++S P +S+L
Sbjct: 589 NERLAFTERNMENIFDSVDSPLNGNKWWLKADNPWQTLAACMELTKAIRSGKPAEFLSNL 648
Query: 709 PIHQDGSCNGLQHYAALGRNTLEAAAVNLVAGEKPADVYSEIAVRVHEIMKRDS-NKDPS 767
PIHQDG+CNGLQHYAALG + A VNL+ + P DVYS +A V +I++ D+ N D
Sbjct: 649 PIHQDGTCNGLQHYAALGGDVWGAEKVNLLPSDCPQDVYSSVAQLVEQIVEEDAKNGDE- 707
Query: 768 KHPQALLAKILIDQVDRKLVKQTVMTSVYGVTFVGAREQIKRRLEEK--GHITDDRQLFA 825
+A+ + +VDRKLVKQTVMTSVYGVT++GAREQI+ + EK D+ +F
Sbjct: 708 ------IAQFFLGKVDRKLVKQTVMTSVYGVTYIGAREQIENAILEKFSDLDLDEDFIFK 761
Query: 826 AACYAAKVTLTALGEIFEAARSIMGWLGDCAKVIASENQPVRWTTPLGLPVVQPYCKNER 885
++ Y K T +L +F ARSIM W+ DCA +IA V W TPLGLPVVQPY K +
Sbjct: 762 SSTYITKNTFASLNNMFVGARSIMKWMSDCATLIAKSGHCVTWNTPLGLPVVQPYKKGGK 821
Query: 886 HLIRTSLQVLALQREGNLVKI--RKQRTAFPPNFVHSLDGSHMMMTAVACRDAGLHFAGL 943
+ IRT + +L+++ +QR+AFPPNF+HSLD +HM +TA+ C D G+ ++ +
Sbjct: 822 YNIRTLECDFIVVHNDDLLQVDSNRQRSAFPPNFIHSLDSTHMFLTAMTCYDQGITYSSV 881
>gi|340960508|gb|EGS21689.1| RNA polymerase-like protein [Chaetomium thermophilum var.
thermophilum DSM 1495]
Length = 1394
Score = 464 bits (1195), Expect = e-128, Method: Compositional matrix adjust.
Identities = 297/836 (35%), Positives = 439/836 (52%), Gaps = 98/836 (11%)
Query: 179 RRRQVKQETEAWERMVDEYKELEAKMIEKRLAPNL--PHIKGLFLGWFGPLSEAIEREQ- 235
R Q + E + E + +++E + L P + P + W L I EQ
Sbjct: 352 REFQSRLERDVLEAALQKWREDNESLASMGLNPQISAPSLSSKLYQWHQALERRIAEEQA 411
Query: 236 ---------KMQRTKKQKAAYAPHIELLPADKVAVIVMHKMMGLVMAGHEDRCVQVVQAA 286
K + Y P + A ++A + ++ L+ D+ V A
Sbjct: 412 KVEASENVPKKSAEDLDRCLYGPLLLQGSATRLAAATIISILSLLSLHGADKGVAASLAV 471
Query: 287 VHIGMAIEQEIRIHSFLEKTKNYKRKKIIADTEEVLSKEKELLRKRVNSLIKS---KRVM 343
+ E++IR EKTK + + TE K + L+R + N +K+ K++
Sbjct: 472 QQVAKVAEEDIRFQ-IAEKTKKLPKHQ----TELQKRKARRLIRVKGNGSLKTTDKKQLG 526
Query: 344 EAQ-KLLKNEETKP-------WGRDTQAKLGSRLVELLIETAYV----QHPVNPADYSPP 391
A L E P W +AK+G+ L+ ++ETA + HPV
Sbjct: 527 VATLPLATTGEMAPAITENTRWPTAIRAKVGALLLTAMMETAKIMVVRDHPVTKEKVH-- 584
Query: 392 DVRPAFRHRFKTILKHPGQKTTKRYGVVECDPLVLEGLDRSAK-HMLIPYVPMLVPPKKW 450
++PAF H + + K+ G+++ +P ++E L R + +L ++PMLV P+ W
Sbjct: 585 QLQPAFSHAMQL-------RKGKKVGIIQANPELVEILKREPRAELLARHLPMLVEPEPW 637
Query: 451 KGYNKGGYLFLPSYVMRTHGSRKQQE--ALKSVTGNCMKKVFEALDTLGSTKWRVNKQVL 508
++KGG+L S ++R +Q+ A ++ M+++ LD LG T WR+N++V
Sbjct: 638 TKFDKGGFLECQSPLIRLKNHEIEQKIYAEAAIERGDMEQMMRGLDVLGKTAWRINRKVF 697
Query: 509 SVLESIWVSG---GNIAGLVDRNDVLIPEKPLSEDMTEVQKWKWSVRKAKKINQER---H 562
V+ ++W G NI L ++ IP +P S D ++K W +R+ K I E+ H
Sbjct: 698 DVMLTVWNEGIAFANIPAL--HPNIPIPPEPDSSD-DPMKKRIW-MRQVKAIQNEKSGMH 753
Query: 563 SQRCDTELKLSVARRMKDEEGFYYPHNLDFRGRAYPMHPHLNHLSSDVCRGVLEFAEGRP 622
S RC +L +AR D+ FY+PHNLDFRGRAYP+ P+LNH+ +D RG+L FA+G+P
Sbjct: 754 SVRCFMNFQLEIARAFIDQT-FYFPHNLDFRGRAYPLPPYLNHMGADHMRGMLLFAKGKP 812
Query: 623 LGKSGLRWLKIHLANLFSGGVEKLSHDGRLAFVENHLYEIFDSAENPINGSRWWLTAEDP 682
LG++GLRWLKIHLAN++ G +K S D R F +++L I DSA NP+ G RWWL EDP
Sbjct: 813 LGENGLRWLKIHLANVY--GYDKASLDDREKFADDNLANIMDSASNPLGGKRWWLQGEDP 870
Query: 683 FQCLAACINLSEALKSSSPHSVISHLPIHQDGSCNGLQHYAALGRNTLEAAAVNLVAGEK 742
+QCLA C L+ AL+S P +SHLP+HQDG+CNGLQHYAALG +T A VNL+ GEK
Sbjct: 871 WQCLATCFELAAALQSPDPTQFVSHLPVHQDGTCNGLQHYAALGGDTWGAQQVNLIPGEK 930
Query: 743 PADVYSEIAVRVHEIMKRDSNKDPSKHPQALLAKILIDQVDRKLVKQTVMTSVYGVTFVG 802
PADVYS +A V E++ +D+ AK L ++ RK+VKQTVMT+VYGVTFVG
Sbjct: 931 PADVYSAVAQLVQEMVTKDAAAGNE------FAKALDGKITRKVVKQTVMTNVYGVTFVG 984
Query: 803 AREQIKRRLEEKGHITDDRQLFAA---ACYAAKVTLTALGEIFEAARSIMGWLGDCAKVI 859
A+ Q++++L+ + + + + Y A ALG +F A +I WLG+ +
Sbjct: 985 AKRQVQKQLDALYPNLESQTGCSTSILSSYMATKIFAALGTMFSGAYAIQSWLGEIGDRV 1044
Query: 860 ASENQP------------------------------VRWTTPLGLPVVQPYCKNERHLIR 889
P + WTTPL +PVVQPY K+ ++
Sbjct: 1045 CRAITPEQLNRIEAEATGESKKKFTDAELNNTFRNTIVWTTPLRMPVVQPYRKSGTRVVP 1104
Query: 890 TSLQVLALQ--REGNLVKIRKQRTAFPPNFVHSLDGSHMMMTAVACRDAGLHFAGL 943
T LQ LALQ + V RKQ AFPPNF+HSLD SHMM++A+ C + GL FA +
Sbjct: 1105 TCLQDLALQVSDRDDPVNRRKQLQAFPPNFIHSLDASHMMLSALECHELGLTFAAV 1160
>gi|409082678|gb|EKM83036.1| hypothetical protein AGABI1DRAFT_69188 [Agaricus bisporus var.
burnettii JB137-S8]
Length = 967
Score = 464 bits (1194), Expect = e-127, Method: Compositional matrix adjust.
Identities = 273/740 (36%), Positives = 425/740 (57%), Gaps = 72/740 (9%)
Query: 248 APHIELLPADKVAVIVMHKMMGLVMAGHEDRCVQVVQAAVHIGMAIEQEIRIHSFLEKTK 307
+P++ L+ +++++I + ++M L + ++ +A + +G A+E E K +
Sbjct: 90 SPYLSLVNPERLSLITIMEIMRLQGSSGVADGMKTARALISVGKAVEMEY-------KAQ 142
Query: 308 NYKRKKIIADTEEVLSKEKELLRKRVNSLIKSKRVMEAQKLLKNEETKPWGRDTQAKLGS 367
K+ +AD++ S L ++ KR+ ++++ E + W + T++K+G
Sbjct: 143 MIKKPDNVADSK---SAGGNLYSHAAYKNLRDKRLAVSKEIEGEERSLGWSQVTRSKIGG 199
Query: 368 RLVELLIETAYVQHPVNPADYSP-PDVRPAFRHRFKTILKHPGQKTTKRYGVVECDPLVL 426
LV+ L+E A V+ + +++PAF H ++ + R GV+ +P+V
Sbjct: 200 ILVDCLMEVAEVERTAKLENGEKVSEMQPAFHHAYEYL-------RGSRLGVIRLNPVVS 252
Query: 427 EGLDRSA-KHMLIP-YVPMLVPPKKWKGYNKGGYLFLPSYVMRTHGSRKQQEALKSVTGN 484
E L K L P ++PMLV P+ W +N GGYL+ + VMR S +QQ LK + +
Sbjct: 253 ERLATDPLKDTLHPRHLPMLVKPQPWVSHNVGGYLYSKTSVMRFKDSIEQQIYLKEASKH 312
Query: 485 C-MKKVFEALDTLGSTKWRVNKQVLSVLESIWVSGGNIAGLV-DRNDVLIPEKPLSEDMT 542
M+ V+ LD L ST W++NK+V V+ W SG + + D P +P E++
Sbjct: 313 GQMELVYAGLDVLASTPWKINKKVFEVVLRTWNSGERLGKVPPAMYDGPEPVQPQVEELA 372
Query: 543 EVQKWKWSVRKAKKINQER---HSQRCDTELKLSVARRMKDEEGFYYPHNLDFRGRAYPM 599
+++K + + + K NQ + HS RC KL +AR ++E FY+PHNLDFRGRAYP+
Sbjct: 373 DMKKRSYYLVRQKAYNQAKANNHSDRCSVNYKLEIARAFLNDE-FYFPHNLDFRGRAYPV 431
Query: 600 HPHLNHLSSDVCRGVLEFAEGRPLGKSGLRWLKIHLANLFSGGVEKLSHDGRLAFVENHL 659
HLNH+ D+CRG+L FAE +PLG GLRWLKIH+ANL+ G +K + D R+ +V+ HL
Sbjct: 432 PAHLNHIGDDLCRGLLTFAEAKPLGVRGLRWLKIHIANLY--GYDKANFDDRVNWVDEHL 489
Query: 660 YEIFDSA----ENPINGSRWWLTAEDPFQCLAACINLSEALKSSSPHSVISHLPIHQDGS 715
+I+ +A ++P + WWL A DP+Q LAA I L +AL+S +P + S LP+HQDG+
Sbjct: 490 DQIYQTATRLLDDPATKA-WWLEASDPWQFLAASIELHDALESGNPEAFESSLPVHQDGT 548
Query: 716 CNGLQHYAALGRNTLEAAAVNLVAGEKPADVYSEIAVRVHEIMKRDSNKDPSKHPQALLA 775
CNGLQHYAALG + A VNL A +KP+DVYS + V E + +D S AL+
Sbjct: 549 CNGLQHYAALGGDVQGARQVNLEASDKPSDVYSHVGAMVEEAIAKDCE---SGDKYALML 605
Query: 776 KILIDQVDRKLVKQTVMTSVYGVTFVGAREQIKRRLEEKGHITDDRQLFAAACYAAKVTL 835
K ++ RK+VKQTVMT+VYGVTF+GAREQI+++L+++ I ++ + ++AA Y A++ L
Sbjct: 606 K---GKITRKVVKQTVMTTVYGVTFIGAREQIEKQLKDRKDIPEE-ECWSAAAYLARLVL 661
Query: 836 TALGEIFEAARSIMGWLGDCAKVIA------------------------------SENQP 865
+G +F+ A+SI WL A+++A +
Sbjct: 662 GCIGNLFKGAQSIQTWLNLSARLVAKSIPEARIPELMAEAAAAKKGQLPMNRLKKEQMTS 721
Query: 866 VRWTTPLGLPVVQPYCKNERHLIRTSLQVLALQREGNLVKIR--KQRTAFPPNFVHSLDG 923
V WTTPLGLP+VQPY K R I T++Q + + L ++ KQ +AFPPN++HSLD
Sbjct: 722 VIWTTPLGLPIVQPYRKIARKQIDTAIQTVYISDPNRLAEVNSAKQASAFPPNYIHSLDA 781
Query: 924 SHMMMTAVACRDAGLHFAGL 943
+HMM+TA+ CR L FA +
Sbjct: 782 THMMLTALECRKKNLTFASV 801
>gi|449541840|gb|EMD32822.1| hypothetical protein CERSUDRAFT_57977 [Ceriporiopsis subvermispora
B]
Length = 966
Score = 464 bits (1193), Expect = e-127, Method: Compositional matrix adjust.
Identities = 277/766 (36%), Positives = 431/766 (56%), Gaps = 82/766 (10%)
Query: 231 IEREQKMQ-RTKKQKAAYAPHIELLPADKVAVIVMHKMMGLVMAGHEDRCVQVVQAAVHI 289
+E E+K+ + + K + +P + LL +K+++I + ++M L G ++ +A + +
Sbjct: 69 VEEERKLGGKYQGVKTSLSPFLTLLKPEKLSLITILELMNLHGTGGVSDGMKTARALLGV 128
Query: 290 GMAIEQEIRIHSFLEKTKNYKRKKIIADTEEVLSKEKELLRKRVNSLIKSKRVMEAQKLL 349
G A+E LE +K IA + +++ L R+ R + A+K +
Sbjct: 129 GRAVE--------LEHKAQMCKKNNIAIPQSQFARQDTSLFTRLGYRDLQARRVAARKYM 180
Query: 350 KNEE--TKPWGRDTQAKLGSRLVELLIETAYVQH----PVNPADYSPPDVRPAFRHRFKT 403
++ E T W + + K+G LV+ L++ A + P YS + +PAF H ++
Sbjct: 181 EDAEDWTSDWSQLVRVKVGGFLVDCLMDVATITRSMTDPNGEEIYS--EEQPAFFHSYEY 238
Query: 404 ILKHPGQKTTKRYGVVECDPLVLEGLDRS-AKHMLIP-YVPMLVPPKKWKGYNKGGYLFL 461
+ H + GV++ +P+V E + + K+ L P ++PMLV PK W G ++GGY++
Sbjct: 239 VRGH-------KLGVIKLNPVVAERMAKDRIKNTLHPRHLPMLVKPKPWLGPDQGGYMYN 291
Query: 462 PSYVMRTHGSRKQQEALK--SVTGNCMKKVFEALDTLGSTKWRVNKQVLSVLESIWVSGG 519
+ MR S +Q L+ S GN ++ V+ ALD LGST W +N+++ ++ ++W SG
Sbjct: 292 RTTAMRYKDSVEQANYLRHASAAGN-LELVYAALDVLGSTPWNINRRIFDIVLTVWNSGK 350
Query: 520 NIAGLVDR-NDVLIPEKPLSEDMTEVQKWKWSVRKAKKINQER---HSQRCDTELKLSVA 575
+ + +D+ PE+P + + T+ Q +++ K Q++ HS RC K+ +A
Sbjct: 351 RMCKMPPVVSDIPEPERPENYE-TDQQARAIYLQRHKLYAQQKANNHSDRCSVNYKIEIA 409
Query: 576 RRMKDEEGFYYPHNLDFRGRAYPMHPHLNHLSSDVCRGVLEFAEGRPLGKSGLRWLKIHL 635
R + + PHN+DFRGRAYP+ PHL+H+ D+ RG+L F E +PLG+ G WLK+HL
Sbjct: 410 RAFLGDT-IFMPHNVDFRGRAYPVPPHLSHIGDDLSRGLLLFGEAKPLGERGFWWLKVHL 468
Query: 636 ANLFSGGVEKLSHDGRLAFVENHLYEIFDSAENPINGSRWWLTAEDPFQCLAACINLSEA 695
ANL+ G +K S R+AFVE HL +IFDS ++P++G WW A+DP+QCLA C+ L A
Sbjct: 469 ANLY--GYDKGSFPERIAFVEAHLDDIFDSVDHPLDGRMWWTKADDPWQCLATCMELKAA 526
Query: 696 LKSSSPHSVISHLPIHQDGSCNGLQHYAALGRNTLEAAAVNLVAGEKPADVYSEIAVRVH 755
++S PH LPIHQDG+CNGLQHYAALG +T AA VNL ++P+DVY+ +A V
Sbjct: 527 IESGDPHKYECALPIHQDGTCNGLQHYAALGGDTQGAAQVNLAVTDRPSDVYTYVADMVE 586
Query: 756 EIMKRDSNKDPSKHPQALLAKILIDQVDRKLVKQTVMTSVYGVTFVGAREQIKRRLEEKG 815
++ D K +A +L +V RK+VKQTVMT+VYGVT++GAR QI+++L +G
Sbjct: 587 GRIREDVAKGDK------VAMLLQGKVARKVVKQTVMTTVYGVTYIGARAQIEKQLASRG 640
Query: 816 HITDDRQLFAAACYAAKVTLTALGEIFEAARSIMGWLGDCAKVIASENQPVR-------- 867
I + + +AA+ Y AK L ++G++F A+ I W CA++IA P R
Sbjct: 641 DIPAE-ECWAASSYLAKHVLGSIGDLFRGAKDIQLWFTSCARLIAKSIPPERIPHACGLV 699
Query: 868 ----------------------------WTTPLGLPVVQPYCKNERHLIRTSLQVLALQ- 898
WTTPLGLP+VQPY +R I T LQ + +
Sbjct: 700 EEEKKKGRPTAKKHPVVRMKAEQMTSVVWTTPLGLPIVQPYRTVKRKQIMTGLQTVFISD 759
Query: 899 -REGNLVKIRKQRTAFPPNFVHSLDGSHMMMTAVACRDAGLHFAGL 943
+ V +KQ +AFPPNF+HSLD +HMM+TA+ CR GL FA +
Sbjct: 760 PNQPAAVNSQKQASAFPPNFIHSLDATHMMLTALECRAQGLTFASV 805
>gi|426200546|gb|EKV50470.1| hypothetical protein AGABI2DRAFT_200200 [Agaricus bisporus var.
bisporus H97]
Length = 967
Score = 464 bits (1193), Expect = e-127, Method: Compositional matrix adjust.
Identities = 273/743 (36%), Positives = 426/743 (57%), Gaps = 78/743 (10%)
Query: 248 APHIELLPADKVAVIVMHKMMGLVMAGHEDRCVQVVQAAVHIGMAIEQEIRIHSFLEKTK 307
+P++ L+ +++++I + ++M L + ++ +A + +G A+E E K +
Sbjct: 90 SPYLSLVNPERLSLITIMEIMRLQGSSGVADGMKTARALISVGKAVEMEY-------KAQ 142
Query: 308 NYKRKKIIADTEEVLSKEKELLRKRVNSLIKSKRVMEAQKLLKNEETKPWGRDTQAKLGS 367
K+ +AD++ S L ++ KR+ ++++ E + W + T++K+G
Sbjct: 143 MIKKLDNVADSK---SAGGNLYSHAAYKNLRDKRLAVSKEIEGEERSLGWSQVTRSKIGG 199
Query: 368 RLVELLIETAYVQHPVNPADYSP-PDVRPAFRHRFKTILKHPGQKTTKRYGVVECDPLVL 426
LV+ L+E A V+ + +++PAF H ++ + R GV+ +P+V
Sbjct: 200 ILVDCLMEVAEVERTAKLENGEKVSEMQPAFHHAYEYL-------RGSRLGVIRLNPVVS 252
Query: 427 EGLDRSA-KHMLIP-YVPMLVPPKKWKGYNKGGYLFLPSYVMRTHGSRKQQEALKSVTGN 484
E L K L P ++PMLV P+ W +N GGYL+ + VMR S +QQ LK + +
Sbjct: 253 ERLATDPLKDTLHPRHLPMLVKPQPWVSHNVGGYLYSKTSVMRFKDSIEQQIYLKEASKH 312
Query: 485 C-MKKVFEALDTLGSTKWRVNKQVLSVLESIWVSGGNIA----GLVDRNDVLIPEKPLSE 539
M+ V+ LD L ST W++NK+V V+ W SG + + D + P +P E
Sbjct: 313 GQMELVYAGLDVLASTPWKINKKVFEVVLRTWNSGERLGKVPPAMYDGPE---PVQPQVE 369
Query: 540 DMTEVQKWKWSVRKAKKINQER---HSQRCDTELKLSVARRMKDEEGFYYPHNLDFRGRA 596
++ +++K + + + K NQ + HS RC KL +AR ++E FY+PHNLDFRGRA
Sbjct: 370 ELADMKKRSYYLVRQKAYNQAKANNHSDRCSVNYKLEIARAFLNDE-FYFPHNLDFRGRA 428
Query: 597 YPMHPHLNHLSSDVCRGVLEFAEGRPLGKSGLRWLKIHLANLFSGGVEKLSHDGRLAFVE 656
YP+ HLNH+ D+CRG+L FAE +PLG GLRWLKIH+ANL+ G +K + D R+ +V+
Sbjct: 429 YPVPAHLNHIGDDLCRGLLTFAEAKPLGVRGLRWLKIHIANLY--GYDKANFDDRVNWVD 486
Query: 657 NHLYEIFDSA----ENPINGSRWWLTAEDPFQCLAACINLSEALKSSSPHSVISHLPIHQ 712
HL +I+ +A ++P + WWL A DP+Q LAA I L +AL+S +P + S LP+HQ
Sbjct: 487 EHLDQIYQTATRLLDDPATKA-WWLEASDPWQFLAASIELHDALESGNPEAFESSLPVHQ 545
Query: 713 DGSCNGLQHYAALGRNTLEAAAVNLVAGEKPADVYSEIAVRVHEIMKRDSNKDPSKHPQA 772
DG+CNGLQHYAALG + A VNL A +KP+DVYS + V E + +D S A
Sbjct: 546 DGTCNGLQHYAALGGDVQGARQVNLEASDKPSDVYSHVGAMVEEAIAKDCE---SGDKYA 602
Query: 773 LLAKILIDQVDRKLVKQTVMTSVYGVTFVGAREQIKRRLEEKGHITDDRQLFAAACYAAK 832
L+ K ++ RK+VKQTVMT+VYGVTF+GAREQI+++L+++ I ++ + ++AA Y A+
Sbjct: 603 LMLK---GKITRKVVKQTVMTTVYGVTFIGAREQIEKQLKDRKDIPEE-ECWSAAAYLAR 658
Query: 833 VTLTALGEIFEAARSIMGWLGDCAKVIA------------------------------SE 862
+ L +G +F+ A+SI WL A+++A +
Sbjct: 659 LVLGCIGNLFKGAQSIQTWLNLSARLVAKSIPEARIPELMAEAAAVKKGQLPMNRLKKEQ 718
Query: 863 NQPVRWTTPLGLPVVQPYCKNERHLIRTSLQVLALQREGNLVKIR--KQRTAFPPNFVHS 920
V WTTPLGLP+VQPY K R I T++Q + + L ++ KQ +AFPPN++HS
Sbjct: 719 MTSVIWTTPLGLPIVQPYRKIARKQIDTAIQTVYISDPNRLAEVNSAKQASAFPPNYIHS 778
Query: 921 LDGSHMMMTAVACRDAGLHFAGL 943
LD +HMM+TA+ CR L FA +
Sbjct: 779 LDATHMMLTALECRKKNLTFASV 801
>gi|410730293|ref|XP_003671326.2| hypothetical protein NDAI_0G03060 [Naumovozyma dairenensis CBS 421]
gi|401780144|emb|CCD26083.2| hypothetical protein NDAI_0G03060 [Naumovozyma dairenensis CBS 421]
Length = 1354
Score = 463 bits (1191), Expect = e-127, Method: Compositional matrix adjust.
Identities = 287/827 (34%), Positives = 451/827 (54%), Gaps = 79/827 (9%)
Query: 158 LYKRIKLQEYREMKK---RKFNLLRRRQVKQET-----EAWERMVDEYKELEAKMIEKRL 209
+YK + + RE + +FN+ R+R ++ E W+ +E KE I K L
Sbjct: 405 IYKSLTNESERETFESILEQFNIDRQRALESRAADAAKERWKHDFEEAKERGDLSIRKSL 464
Query: 210 APNLPHIKGLFLGWFGPLSEAIEREQ-KMQRTKK--QKAAYAPHIELLPADKVAVIVMHK 266
L + L L L + IE+ Q K+++ K + + P++ L+ +K+ VI + +
Sbjct: 465 NVKLWNWYELMLP---ILKKEIEKAQLKLEKQSKIFKSQDFDPYLLLVNPEKMCVITILE 521
Query: 267 MMGLVMAGHEDRCVQVVQAAVHIGMAIEQEIRIHSFLEKTKNYKRKKIIADTEEVLSKEK 326
++ L G ++ +A + +G AIE E R L+ I D + ++ K
Sbjct: 522 LLKLNSTGGVIEGMRTARAVISVGKAIEMEFRSEQLLKN-----ESSIFKDINKKSAEFK 576
Query: 327 ELLRKRVNSLIKSKRVMEAQKLLKNEETKPWGRDTQAKLGSRLVELLIETAYVQ----HP 382
++++ R S +S + +E K+ W + +A++GS L+ LI A + P
Sbjct: 577 KIVQ-RAKSNFRSTQ-LEKSKIF-------WPQAVRAQIGSILISTLIHVAKIDVEGFDP 627
Query: 383 VNPADYSPPDVRPAFRHRFKTILKHPGQKTTKRYGVVECDPLVLEGLD--RSAKHMLIPY 440
+ PAF H ++ + GV++ ++ L+ R +
Sbjct: 628 ITKTKVYGE--APAFAHSYQYC-------NGMKLGVIKIHKALINQLNGERLVASVQPQL 678
Query: 441 VPMLVPPKKWKGYNKGGYLFLPSYVMRTHGSRKQQEALKSVTGN-CMKKVFEALDTLGST 499
+PMLV P++WK + GGY + S ++R+ S +Q LK+V+ + V+ L+ LG T
Sbjct: 679 LPMLVEPREWKNWRSGGYFYTQSTLIRSKESPEQLAYLKAVSDKEAIDDVYNGLNALGKT 738
Query: 500 KWRVNKQVLSVLESIWVSGGNIAGL--VDRNDVLIPEKPLSEDMTEVQKWKWSVRK-AKK 556
W VNK++ ++ +W G + + + LIP P + D + +++WK ++ A K
Sbjct: 739 AWTVNKRLFEIISKVWNEGIEFLDIPQIQYDMQLIPPPPRNSDPSILREWKLQNKEIANK 798
Query: 557 INQERHSQRCDTELKLSVARRMKDEEGFYYPHNLDFRGRAYPMHPHLNHLSSDVCRGVLE 616
I++ R S RCDT KL +AR E+ FY+PHNLDFRGRAYP+ PH NHL +D+ RG+L
Sbjct: 799 ISKNR-SIRCDTNYKLEIARAFLGEK-FYFPHNLDFRGRAYPLSPHFNHLGNDLSRGLLI 856
Query: 617 FAEGRPLGKSGLRWLKIHLANLFSGGVEKLSHDGRLAFVENHLYEIFDSAENPINGSRWW 676
F +G+ LG GL WLKIH ANL+ G++K+ R+ F+E+H+ ++ D+AENP++G WW
Sbjct: 857 FWKGKKLGPDGLSWLKIHCANLY--GMDKIPFTERIQFIEDHIEDVKDTAENPLDGKGWW 914
Query: 677 LTAEDPFQCLAACINLSEALKSSSPHSVISHLPIHQDGSCNGLQHYAALGRNTLEAAAVN 736
A+ P+Q LA CI L+EALK +P ISH P+HQDG+CNGLQHYAALG + A VN
Sbjct: 915 KKADKPWQLLATCIELNEALKLDNPEDFISHQPVHQDGTCNGLQHYAALGGDVEGATQVN 974
Query: 737 LVAGEKPADVYSEIAVRVHEIMKRDSNKDPSKHPQALLAKILIDQVDRKLVKQTVMTSVY 796
L+ E+P DVY +A V + +++ K A++L+D++ RK+VKQ VMT+VY
Sbjct: 975 LIPNERPQDVYRHVANLVKKRLEKAVLAGDKK------AELLVDKITRKVVKQPVMTNVY 1028
Query: 797 GVTFVGAREQIKRRLEEKGHITDDRQLFAAACYAAKVTLTALGEIFEAARSIMGWLGDCA 856
GVT+VGA QI+++L E + D +Q F + Y + E+F +A I WLG+CA
Sbjct: 1029 GVTYVGATFQIEKQLSE--YFPDRKQCFDLSKYLTFHVFATIRELFHSAHLIQDWLGECA 1086
Query: 857 KVIASE-------------NQP-----VRWTTPLGLPVVQPYCKNERHLIRTSLQVLALQ 898
K I N+P V WTTPLGLP+VQPY + + + T+LQ + +
Sbjct: 1087 KRITKSIRLDVDGKSFKNGNKPDFMSSVIWTTPLGLPIVQPYREATKKQVMTNLQTIFIS 1146
Query: 899 REG--NLVKIRKQRTAFPPNFVHSLDGSHMMMTAVACRDAGLHFAGL 943
N V R+Q+ FPPNF+HSLD SHM+++A+ C++ GL FA +
Sbjct: 1147 DPFAINGVNARRQKAGFPPNFIHSLDASHMLLSAIKCKENGLEFASV 1193
>gi|315046832|ref|XP_003172791.1| DNA-directed RNA polymerase [Arthroderma gypseum CBS 118893]
gi|311343177|gb|EFR02380.1| DNA-directed RNA polymerase [Arthroderma gypseum CBS 118893]
Length = 1375
Score = 463 bits (1191), Expect = e-127, Method: Compositional matrix adjust.
Identities = 282/835 (33%), Positives = 448/835 (53%), Gaps = 97/835 (11%)
Query: 166 EYREMKKRKFNLLRRRQVKQET-----EAW----ERMVDEYKELEAKMIEKRLAPNLPHI 216
E RE K++ LR+ Q+++++ E W E + + +++EAK+ +
Sbjct: 358 EEREQNKKR---LRQEQLEKDSLTSAIERWRKESEGAIGQRRQVEAKLNA--------FM 406
Query: 217 KGLFLGWFGPLSEAI------EREQKMQRTKKQKAAYAPHIELLPADKVAVIVMHKMMGL 270
+ G G + E + E ++K+ + ++ Y P + + K+A + + ++G
Sbjct: 407 YEWYQGVLGKIKEELDLAKRSESKKKLTSEESERCEYIPFLLAVGPSKLAAVTILSVLGS 466
Query: 271 VMAGHEDRCVQVVQAAVHIGMAIEQEIRIH----SFLEKTKNYKRKKIIADTEEVLSKEK 326
+ + D+ +++ +IG A++ E + S +E+ +N EV K
Sbjct: 467 IGSSGMDKGIKLSSLFTNIGRAVKDEYIVETTRRSAIEEAQN---------ENEVYYLNK 517
Query: 327 ELLRKRV-NSLIKSKRVMEAQKLLKNEETKPWGRDTQAKLGSRLVELLIETAYV--QHPV 383
+ +V N+ K + M QK K++ W T+ K+G+ L +L TA + H
Sbjct: 518 TFRQMKVYNTTGKFRSYM--QKHTKDQPPVHWPASTEIKIGALLSSMLFSTAEIPTSHKD 575
Query: 384 NPADYSPPDVRPAFRHRFKTILKHPGQKTTKRYGVVECDPLVLEGLDRS-AKHMLIPYVP 442
A+ + PAF+H ++ H G V+ V+E L + + ++L ++P
Sbjct: 576 PVAETVTYAMEPAFQHVYQLQKGH-------NVGYVQLHEKVVERLRKEPSGNLLAKHLP 628
Query: 443 MLVPPKKWKGYNKGGYLFLPSYVMRTHGSRKQQEALKSVTGNC-MKKVFEALDTLGSTKW 501
M+ P+ W +GG+L P+ V+RT Q + L++ + + ++++ L LG T W
Sbjct: 629 MVSTPRPWVSNTQGGFLTQPTQVVRTRHDDAQSQYLQAASDRGDLDELYKGLTILGKTGW 688
Query: 502 RVNKQVLSVLESIWVSGGNIAGLVDRNDVLIPE--KPLSEDMTEVQKWKWSVRKAKKINQ 559
++N+ V V+ W SG +A +V N + +PE KP +ED ++ + + +A
Sbjct: 689 KINRPVFDVMLEAWNSGEEVANIVAAN-LNLPELEKPDAEDREAIKTYYRAKTRADNKKM 747
Query: 560 ERHSQRCDTELKLSVARRMKDEEGFYYPHNLDFRGRAYPMHPHLNHLSSDVCRGVLEFAE 619
HSQRC ++ +AR +E FY PHN+DFRGRAYP+ P+ N + +D CRG+L F+E
Sbjct: 748 GNHSQRCYLNFQMEIARAYLNE-SFYLPHNMDFRGRAYPLPPYFNQMGADNCRGLLLFSE 806
Query: 620 GRPLGKSGLRWLKIHLANLFSGGVEKLSHDGRLAFVENHLYEIFDSAENPINGSRWWLTA 679
GR LG+SGLRWL+IHL+N+F G +K S R F +H+ EI DSA N + G RWWL A
Sbjct: 807 GRVLGESGLRWLRIHLSNVF--GYDKASFQEREQFSIDHVEEILDSANNGLKGKRWWLKA 864
Query: 680 EDPFQCLAACINLSEALKSSSPHSVISHLPIHQDGSCNGLQHYAALGRNTLEAAAVNLVA 739
DPFQCLAAC+ L AL P +SHLP+HQDGSCNGLQHYAALG + + A VNL
Sbjct: 865 ADPFQCLAACVELKNALSLPDPTQYVSHLPVHQDGSCNGLQHYAALGGDAIGARQVNLEP 924
Query: 740 GEKPADVYSEIAVRVHEIMKRDSNK-DPSKHPQALLAKILIDQVDRKLVKQTVMTSVYGV 798
G++P+D+Y+ +A V + D+ DP +AK++ ++ RK+VKQTVMT+VYGV
Sbjct: 925 GDRPSDIYTAVAEHVKASIANDAKAGDP-------IAKLMDGKITRKVVKQTVMTNVYGV 977
Query: 799 TFVGAREQIKRRLEEK-GHITDDRQLFAAACYAAKVTLTALGEIFEAARSIMGWLGDCAK 857
TF+GA Q++R++E+ + + ++ A + ++ +AL +F A I WLGDCA
Sbjct: 978 TFIGATRQVRRQIEDHYPELAESDEISKCAVHVSRAIFSALNSMFSGAHDIQFWLGDCAN 1037
Query: 858 VIASE---------------------------NQPVRWTTPLGLPVVQPYCKNERHLIRT 890
+ N V WTTPL LPVVQPY + + I T
Sbjct: 1038 RVTRSLNPSQIEEIRKELEAPSKTDLSKKLKFNNSVIWTTPLKLPVVQPYREAKARQIPT 1097
Query: 891 SLQVLALQ--REGNLVKIRKQRTAFPPNFVHSLDGSHMMMTAVACRDAGLHFAGL 943
SLQ+ ++ R N V RKQ AFPPNF+HSLD +HMM++A+ C + GL+F+ +
Sbjct: 1098 SLQLCTIKDVRGANEVNRRKQLQAFPPNFIHSLDATHMMLSAIKCDELGLNFSAV 1152
>gi|388858367|emb|CCF48096.1| related to RPO41-DNA-directed RNA polymerase, mitochondrial [Ustilago
hordei]
Length = 1536
Score = 462 bits (1190), Expect = e-127, Method: Compositional matrix adjust.
Identities = 280/753 (37%), Positives = 423/753 (56%), Gaps = 86/753 (11%)
Query: 249 PHIELLPADKVAVIVMHKMMGLVMAGHEDRCVQVVQAAVHIGMAIEQEIRIHSFLEKTKN 308
P + L+P K+A+I + ++M + G ++ +A + +G AIE E + +
Sbjct: 600 PFLRLVPVSKLALITILEIMRMSGNGGVADGMKTTRALLAVGRAIEMEYHSDVVRKNPRI 659
Query: 309 YKRKKIIADTEEVLSKEKELLRKRVNSLIKS-KRVMEAQKLLKNEETKPWGRDTQAKLGS 367
++ A T + + +++ L+ + I++ ++ E + +L + W + +A++GS
Sbjct: 660 FQN----AHTAQTVLRKRGLINLAARNEIRAWQKQQEEEGVLSS--IPKWTQAVRARVGS 713
Query: 368 RLVELLIETAYVQHPVNPADYSP-PDVRPAFRHRFKTILKHPGQKTTKRYGVVECDPLVL 426
LV+ L+ A V D + +PAF ++ + K+ GV++ + ++
Sbjct: 714 YLVQHLMHVANVSRKATDRDGVLWEEDQPAFYSTYQYL-------GGKKLGVIKLNEVIA 766
Query: 427 EGLDR-SAKHMLIP-YVPMLVPPKKWKGYNKGGYLFLPSYVMRTHGSRKQQEALKSV--T 482
+ LD+ S + L P ++PMLVPPK W ++ GGY + MR S +Q L++ T
Sbjct: 767 QRLDKDSMQETLHPRHLPMLVPPKPWTSHDSGGYYSVRQSAMRYKDSAEQGSYLRAASDT 826
Query: 483 GNCMKKVFEALDTLGSTKWRVNKQVLSVLESIWVSGGNIAGL--VDRNDVLIPEKP--LS 538
G+ + + ALD LG+T W++NK + V+ IW SG + AG+ VD P+KP +
Sbjct: 827 GD-VDTILAALDVLGNTSWKINKPIFDVMLEIWNSGKDTAGMPPVDMEQPE-PQKPDNYN 884
Query: 539 EDMTEVQKWKWSVRKAKKINQE---RHSQRCDTELKLSVARRMKDEEGFYYPHNLDFRGR 595
DM + +++ K+ NQ+ HSQRCD KL +AR E FY+PHN+DFRGR
Sbjct: 885 HDMKARSVY---LQRLKQWNQQCASNHSQRCDVNYKLEIARAYLGER-FYFPHNMDFRGR 940
Query: 596 AYPMHPHLNHLSSDVCRGVLEFAEGRPLGKSGLRWLKIHLANLFSGGVEKLSHDGRLAFV 655
AYPM PHLNH+ +D+CRG+L FA+ +PLGK+GLRWL+IH++N+F G +K S R F
Sbjct: 941 AYPMPPHLNHIGNDLCRGLLMFADAKPLGKTGLRWLRIHISNVF--GYDKASFGEREQFA 998
Query: 656 ENHLYEIFDSAENPINGSRWWLTAEDPFQCLAACINLSEALK-SSSPHSVISHLPIHQDG 714
+H +I DS E ++G RWWL A+DP+QCLAAC+ L AL P + S+LP+HQDG
Sbjct: 999 IDHEADIRDSVERTLDGQRWWLKADDPWQCLAACMELKAALDHPDGPEAYESNLPVHQDG 1058
Query: 715 SCNGLQHYAALGRNTLEAAAVNLVAGEKPADVYSEIAVRVHEIMKRDSNKDPSKHPQALL 774
+CNGLQHYAALG + A VNL G++PADVYS +A V +++ ++ K L
Sbjct: 1059 TCNGLQHYAALGGDLAGAKQVNLSRGDRPADVYSGVADLVIKMLDEEAAKGER------L 1112
Query: 775 AKILIDQVDRKLVKQTVMTSVYGVTFVGAREQIKRRLEEKGHITDDRQLFAAACYAAKVT 834
A IL +V RK+VKQTVMT+VYGVTF+GA+ Q+ R+L +G + + LF AA + AK+
Sbjct: 1113 ATILQGKVTRKVVKQTVMTTVYGVTFIGAKNQVMRQLAARGDVPAE-DLFQAASFLAKII 1171
Query: 835 LTALGEIFEAARSIMGWLGDCAKVIASE------------NQP----------------- 865
++ +G +F A+ I WL AKVIA QP
Sbjct: 1172 MSCIGNLFSGAQKIQDWLIFSAKVIAKSIPSQRVEEATRPYQPSETNLKRADARGYSRDP 1231
Query: 866 -------------VRWTTPLGLPVVQPYCKNERHLIRTSLQVLALQ--REGNLVKIRKQR 910
V WTT LGLPVVQPY K ++ I T++Q + + + V KQ
Sbjct: 1232 AKADRIVKEQMTSVIWTTALGLPVVQPYRKTKKRQISTAMQTVFINDPHSNSEVSPAKQA 1291
Query: 911 TAFPPNFVHSLDGSHMMMTAVACRDAGLHFAGL 943
+AFPPNF+HSLD +HM++TA+ C AGL FA +
Sbjct: 1292 SAFPPNFIHSLDATHMILTALECHAAGLTFASV 1324
>gi|150865988|ref|XP_001385433.2| mitochondrial DNA-directed RNA polymerase [Scheffersomyces stipitis
CBS 6054]
gi|149387244|gb|ABN67404.2| mitochondrial DNA-directed RNA polymerase [Scheffersomyces stipitis
CBS 6054]
Length = 1251
Score = 462 bits (1189), Expect = e-127, Method: Compositional matrix adjust.
Identities = 305/851 (35%), Positives = 468/851 (54%), Gaps = 112/851 (13%)
Query: 154 FLKGLYKRIKLQEYREMKK---RKFNLLRRR--QVKQETEAWERMVDEYKELEAKMIEKR 208
F K +YK +K +E RE FNL R+R +V+ A E+ E++E++ KR
Sbjct: 294 FFK-VYKTLKTEEQREKFNSGLHSFNLTRQRRLEVRGADGAKEKWKHEFEEMQ-----KR 347
Query: 209 LAPNLPHIKGL---FLGWFGPLSEAIEREQKM------------------QRTKKQKAAY 247
A LP KGL W+ L +++E +M ++ K + Y
Sbjct: 348 GA--LPLNKGLNAQLFQWYKNLLPYVKKEAEMCQKLMDGKVSKTDLSPDEKKLYKDREYY 405
Query: 248 APHIELLPADKVAVIVMHKMMGLVMAGHEDRCVQVVQAAVHIGMAIEQEIRIHSFLEKTK 307
AP++ L+P +K+ VI + +++ L G ++ +A + +G A+E E +
Sbjct: 406 APYMVLVPPEKMCVITILELLKLNSTGGIVDGMRAARALISVGKAVELEYK--------- 456
Query: 308 NYKRKKIIADTEEVLSKEKELLRKRVNSLIKSKRVMEAQK--LLKN-EETKPWGRDTQAK 364
++ +L E + K+V S + KR++ +K +++N +++ W AK
Sbjct: 457 ----------SQSLLKSEIKAFSKKVKSTNQWKRILSNKKNNIIENPDDSTDWSYTVYAK 506
Query: 365 LGSRLVELLIETAYVQHPV---NPAD-YSPPDVRPAFRHRFKTILKHPGQKTTKRYGVVE 420
LG+ L LL+ A V PV NP + +PAF H ++ + GQK GV++
Sbjct: 507 LGAVLTNLLLFVAKV--PVKAHNPTTGKTITGSQPAFFHTYQFL---NGQKL----GVIK 557
Query: 421 CDPLVLEGL-DRSAKHMLIP-YVPMLVPPKKWKGYNKGGYLFLPSYVMRTHGSRKQQEAL 478
+++ L RS + + P +PMLV P++W YN GGYL+ S ++R S + L
Sbjct: 558 LHKEIIKQLAGRSLSNAVQPQLLPMLVAPREWHSYNDGGYLYSRSTLVRIKDSAETTAYL 617
Query: 479 KSVT--GNCMKKVFEALDTLGSTKWRVNKQVLSVLESIWVSGG---NIAGLVDRNDVLIP 533
+ GN + +V++ L+ LG T W VN++V ++ W SG +I +++ + +P
Sbjct: 618 RKAADLGN-LNEVYDGLNVLGKTPWTVNRRVFEIITRYWNSGEEFLDIPPIMEEPN--LP 674
Query: 534 EKPLSEDMTEVQKWKWSVRKAKKINQER--HSQRCDTELKLSVARRMKDEEGFYYPHNLD 591
E PL D QK+++ + +N+ SQRCDT KL +AR E+ F+ PHN+D
Sbjct: 675 E-PLPVDAEPAQKFEYQRKLRSALNEAASLRSQRCDTNYKLEIARGFLGEKVFF-PHNVD 732
Query: 592 FRGRAYPMHPHLNHLSSDVCRGVLEFAEGRPLGKSGLRWLKIHLANLFSGGVEKLSHDGR 651
FRGRAYP+ PH NHL +D+ R + F EGR LG+ GL WLKIHLAN++ GV+K + R
Sbjct: 733 FRGRAYPISPHFNHLGNDLTRSLFLFWEGRELGERGLEWLKIHLANVY--GVDKAPLNER 790
Query: 652 LAFVENHLYEIFDSAENPINGSRWWLTAEDPFQCLAACINLSEALKSSSPHSVISHLPIH 711
+ FV ++L +F+SA NP + WW AE P+Q L C L EA K +P +SH+PIH
Sbjct: 791 VQFVNDNLENVFESARNPYDTDAWWKKAEKPWQALGVCFELEEAYKLENPTQYVSHIPIH 850
Query: 712 QDGSCNGLQHYAALGRNTLEAAAVNLVAGEKPADVYSEIAVRVHEIMKRDSNKDPSKHPQ 771
QDG+CNGLQHYAALG + A VNL+ ++P DVY +A V + + ++ ++ +K+
Sbjct: 851 QDGTCNGLQHYAALGGDIEGARQVNLLPADRPQDVYKYVASLVQKRIDAEA-EEGNKY-- 907
Query: 772 ALLAKILIDQVDRKLVKQTVMTSVYGVTFVGAREQIKRRLEEKGHITDDRQLFAAACYAA 831
A L D++ RK+VKQTVMT+VYGVTFVGA QIK+++++ + + + + A Y
Sbjct: 908 ---AVFLQDKITRKVVKQTVMTNVYGVTFVGATAQIKKQIDQ--YFSGEEDVADYARYLT 962
Query: 832 KVTLTALGEIFEAARSIMGWLGDCAKVI------------ASENQP-----VRWTTPLGL 874
++ E+FE A I WLGD AK + +++ +P V WTTPLGL
Sbjct: 963 MHVFNSIRELFEGAHLIQDWLGDAAKRVSKSVRIDYEDAKSNDGKPNHLSSVIWTTPLGL 1022
Query: 875 PVVQPYCKNERHLIRTSLQVLALQR--EGNLVKIRKQRTAFPPNFVHSLDGSHMMMTAVA 932
P VQPY ++ LI+T+LQ +++ + V RKQ+ AFPPNFVHSLD +HM+MTA A
Sbjct: 1023 PCVQPYRISKNQLIKTNLQDISISDPFSASQVDARKQQAAFPPNFVHSLDATHMLMTAKA 1082
Query: 933 CRDAGLHFAGL 943
C DA L FA +
Sbjct: 1083 CGDARLSFASV 1093
>gi|344232068|gb|EGV63947.1| DNA/RNA polymerase [Candida tenuis ATCC 10573]
Length = 1279
Score = 462 bits (1188), Expect = e-127, Method: Compositional matrix adjust.
Identities = 302/839 (35%), Positives = 452/839 (53%), Gaps = 90/839 (10%)
Query: 157 GLYKRIKLQEYREMKKRKFNLLRRR-----QVKQETEAWERMVDEYKELE-------AKM 204
LYK +K + RE +L R +++ A E+ +Y+E++ AK
Sbjct: 321 ALYKLLKTDQDREKFNEALDLFNRARQRTIELRGADSAKEKWKHDYEEMQRRGSIHFAKS 380
Query: 205 IEKRLAPNLPHIKGLFLGWFGPLSEAIEREQKMQRTK-------KQKAAYAPHIELLPAD 257
+ RL + + ++ E +Q K K+++ YAP++ L+ +
Sbjct: 381 LNARLYEWYEMLLPFVKEEVNQCHKIMDGEITIQNAKSEDRALVKERSYYAPYLTLVTPE 440
Query: 258 KVAVIVMHKMMGLVMAGHEDRCVQVVQAAVHIGMAIEQEIRIHSFLEKTKNYKRKKIIAD 317
K+ + + +++ L G ++ +A + +G AIE E YK +K++
Sbjct: 441 KMCAVTILELLRLNSTGGIADGMRTARALISVGKAIELE------------YKSQKLMES 488
Query: 318 TEEVLSKEKELLRKRVNSLIKSKRVMEA-QKLLKNEETKPWGRDTQAKLGSRLVELLIET 376
++ +SK+ R+ K RVM K N+ W AK+GS L LLI
Sbjct: 489 EKKSISKKSRSARE----WNKIFRVMNNYSKDSDNQAHNEWDNTLHAKIGSILTSLLIHV 544
Query: 377 AYVQHPVNPADYSPPDV----RPAFRHRFKTILKHPGQKTTKRYGVVECDPLVLEGLDRS 432
A V PV D + +PAF H ++ + GQK GV++ +++ L
Sbjct: 545 AKV--PVKGTDPATGKTVTGSQPAFFHTYQYL---QGQKL----GVLKLHKNIIKQLSVD 595
Query: 433 AKHMLIP--YVPMLVPPKKWKGYNKGGYLFLPSYVMRTHGSRKQQEALKSVTGNC-MKKV 489
L+ ++PML PP+KW YN+GGYLF + ++RT S + LK+ + + KV
Sbjct: 596 VDGSLLQPHFLPMLTPPRKWSSYNEGGYLFSQNTLVRTRDSPETLAYLKAASQRGDLDKV 655
Query: 490 FEALDTLGSTKWRVNKQVLSVLESIWVSGG---NIAGLVDRNDVLIPEK-PLSEDMTEVQ 545
++ L+ LG+T W VN++VL V+ W +G +I +VD + +PE P + + ++
Sbjct: 656 YDGLNVLGNTPWTVNRKVLEVMTKFWNTGDEFLDIPPVVDEPE--LPEPVPSNAEPNVLR 713
Query: 546 KWKWSVRKAKKINQERHSQRCDTELKLSVARRMKDEEGFYYPHNLDFRGRAYPMHPHLNH 605
+++ VR A I+ SQRCDT KL +AR E+ F+ PHN+DFRGRAYPM PH NH
Sbjct: 714 EYQRKVRLAINISASAKSQRCDTNYKLEIARAFLGEKMFF-PHNIDFRGRAYPMSPHFNH 772
Query: 606 LSSDVCRGVLEFAEGRPLGKSGLRWLKIHLANLFSGGVEKLSHDGRLAFVENHLYEIFDS 665
L +D+ R + F +G+ LG+ GL WLK+HLANL+ GV+K+ + R F E HL +I +S
Sbjct: 773 LGNDLTRSLFLFWDGKQLGERGLWWLKVHLANLY--GVDKIPLEERAQFTETHLDKIRES 830
Query: 666 AENPINGSRWWLTAEDPFQCLAACINLSEALKSSSPHSVISHLPIHQDGSCNGLQHYAAL 725
AE P + WW E P+Q LA C L+EA K P +SH+P+HQDGSCNGLQHYAAL
Sbjct: 831 AETPFDKDAWWTKGEKPWQVLACCFELNEAYKLEDPTQYVSHVPVHQDGSCNGLQHYAAL 890
Query: 726 GRNTLEAAAVNLVAGEKPADVYSEIAVRVHEIMKRDSNKDPSKHPQALLAKILIDQVDRK 785
G + A VNL ++P DVYS +A V + + D+ KH A L D+++R+
Sbjct: 891 GGDIEGARQVNLYPADRPQDVYSSVASIVQQRVDADAEAG-EKH-----AVFLKDKINRR 944
Query: 786 LVKQTVMTSVYGVTFVGAREQIKRRLEEKGHITDDRQLFAA--ACYAAKVTLTALGEIFE 843
+VKQTVMT+VYGVTFVGAREQIK++L K H D + + A Y + A+ E+F
Sbjct: 945 VVKQTVMTNVYGVTFVGAREQIKKQL--KVHFDSDSEENSGEYAQYLTQHVFAAVRELFS 1002
Query: 844 AARSIMGWLGDCAKVIA------------SENQP-----VRWTTPLGLPVVQPYCKNERH 886
A I WLG+ A++I+ S ++P V WTTPLGLP VQPY ++
Sbjct: 1003 GAHLIQDWLGEAARIISKSVRVDYEDSTTSNDKPNHVSSVIWTTPLGLPCVQPYRTIKKQ 1062
Query: 887 LIRTSLQVLALQRE--GNLVKIRKQRTAFPPNFVHSLDGSHMMMTAVACRDAGLHFAGL 943
+I+T+LQ +A+ +LV RKQ+TA PPNFVHSLD +HM+MTA C+ + FA +
Sbjct: 1063 IIKTNLQDVAITDPFGASLVDARKQKTALPPNFVHSLDATHMLMTASTCKYENISFASV 1121
>gi|425767195|gb|EKV05770.1| DNA-directed RNA polymerase [Penicillium digitatum Pd1]
gi|425769079|gb|EKV07586.1| DNA-directed RNA polymerase [Penicillium digitatum PHI26]
Length = 1288
Score = 462 bits (1188), Expect = e-127, Method: Compositional matrix adjust.
Identities = 287/821 (34%), Positives = 441/821 (53%), Gaps = 85/821 (10%)
Query: 181 RQVKQETEAWERMVDEYKE--LEAKMIEKRLAPNLPHIKGLFLGWFGPLSEAIEREQKMQ 238
RQ + ET++ + + ++E E + +A + + G+ W L I++E +
Sbjct: 251 RQQRLETDSLDSALWRWREDNAERQKFGLNVASDEKRLNGIMSQWHTDLVARIKKELVLV 310
Query: 239 RT----------KKQKAAYAPHIELLPADKVAVIVMHKMMGLVMAGHEDRCVQVVQAAVH 288
+ +K++ Y ++ L D++A + + +M D+ +++ A
Sbjct: 311 KEALAARIVSLEQKERCEYGVFLQALDPDRLAALTLLSVMSTFSRQGMDKGIKLSILASV 370
Query: 289 IGMAIEQEIRIHSFLEKTKNYKRKKIIADTEEVLSKEKELLRKRVNSLIKSKRVMEAQKL 348
+G ++ E+ +FL++ K+ ++ A + + +++ + R R SL+ +K+
Sbjct: 371 VGKELQDELIADTFLKRNKSMDSSRLKALKQTLANRKDKQGRLRWRSLV--------EKI 422
Query: 349 LKNEETKPWGRDTQAKLGSRLVELLIETAYVQHPVNPADYSPPD----VRPAFRHRFKTI 404
E+ WG +Q K+G+ L+ +L+E + + PV D + ++PAF H ++
Sbjct: 423 NAENESILWGSRSQVKIGAVLMSMLVEVS--KAPVWTEDPATKKRILTMQPAFDHSYQI- 479
Query: 405 LKHPGQKTTKRYGVVECDPLVLEGLDRSA-KHMLIPYVPMLVPPKKWKGYNKGGYLFLPS 463
KR G + + ++E + R +L ++PM+ P+ W G GGY S
Sbjct: 480 ------NFGKRSGHIHMNSKLVEIVAREPPAELLARHLPMVCKPRPWTGPRSGGYKVYES 533
Query: 464 YVMRTH-GSRKQQEALKSV-TGNCMKKVFEALDTLGSTKWRVNKQVLSVLESIWVSGGNI 521
++RT G Q LK+V + +K++ LD LG+T W++N+QV V+ W GG +
Sbjct: 534 NLVRTTPGELLQPAYLKAVLKDDGLKEIRAGLDVLGATGWKINQQVFDVMLEAWNDGGAV 593
Query: 522 AGLVDRN-DVLIPEKPLSE-DMTEVQKWKWSVRKAKKINQERHSQRCDTELKLSVARRMK 579
L N D+ +PE+P + D ++W VR+ + + HS RC +L VAR +
Sbjct: 594 GKLAPLNPDLQVPEQPSPDADYATQKQWHHKVREIENLRSGFHSVRCFQNFQLEVARAFR 653
Query: 580 DEEGFYYPHNLDFRGRAYPMHPHLNHLSSDVCRGVLEFAEGRPLGKSGLRWLKIHLANLF 639
+E FY PHN+DFRGRAYP+ P++N + +D RG+L F +G+ LG+SG+RWLKI +ANLF
Sbjct: 654 -KEVFYLPHNMDFRGRAYPLPPYMNQMGADNSRGLLLFDKGKALGESGMRWLKIQIANLF 712
Query: 640 SGGVEKLSHDGRLAFVENHLYEIFDSAENPINGSRWWLTAEDPFQCLAACINLSEALKSS 699
G +K S R F NHL ++ DSA ++G RWWL AEDP+Q LAAC L AL+ S
Sbjct: 713 --GFDKASMSEREQFTMNHLDDVLDSANAGLHGRRWWLQAEDPWQLLAACCELRNALQLS 770
Query: 700 SPHSVISHLPIHQDGSCNGLQHYAALGRNTLEAAAVNLVAGEKPADVYSEIAVRVHEIMK 759
P +SHLPIHQDGSCNGLQHYAALG + + A VNL ++P+DVY+ + V E +
Sbjct: 771 KPTEYVSHLPIHQDGSCNGLQHYAALGGDRVGAQQVNLEPSDRPSDVYTGVCEFVKEAIA 830
Query: 760 RD-SNKDPSKHPQALLAKILIDQVDRKLVKQTVMTSVYGVTFVGAREQIKRRLEEKGHIT 818
+D +N D LA+ L +V RK+VKQTVMT+VYGVTF+GA Q+KR+L +
Sbjct: 831 QDAANGD-------RLAQRLDGRVTRKIVKQTVMTNVYGVTFLGATRQVKRQLIDYLPDL 883
Query: 819 DDRQLFAAACYAAKVTLTALGEIFEAARSIMGWLGDCAKVIASENQP------------- 865
+ + AA Y A ALG +F A I WLGDCA+ I P
Sbjct: 884 SNTERNKAAFYIATKIFGALGSMFNGAHEIQYWLGDCAQRITQSVTPEQIEELTQAALVP 943
Query: 866 ---------------------VRWTTPLGLPVVQPYCKNERHLIRTSLQVLALQREG--N 902
V WTTPLGLPVVQPY + ++TSLQ ++L G +
Sbjct: 944 KDERDDNFATSTDPEKSFRSTVIWTTPLGLPVVQPYRTRKTRRVQTSLQDISLVDPGSDD 1003
Query: 903 LVKIRKQRTAFPPNFVHSLDGSHMMMTAVACRDAGLHFAGL 943
+V RKQ AFPPNF+HSLD +HM+M+A AC +AGL F+ +
Sbjct: 1004 VVSKRKQLQAFPPNFIHSLDATHMIMSANACHEAGLTFSAV 1044
>gi|298708570|emb|CBJ30655.1| mitochondrial DNA-directed RNA polymerase [Ectocarpus siliculosus]
Length = 1167
Score = 462 bits (1188), Expect = e-127, Method: Compositional matrix adjust.
Identities = 291/850 (34%), Positives = 450/850 (52%), Gaps = 113/850 (13%)
Query: 175 FNLLRRRQVKQETEAWERMVDEYKELEAKMIEKRLAPNLPHIKGLFLGWFGPLSEAIERE 234
++ L + Q+ +E ++ + ++Y ++ +++ + I+ L W+ L E+IERE
Sbjct: 281 YSTLYQMQLDREDQSHQEACEKYGKMVKELMTMGKGTQMKPIERLLTTWYPALKESIERE 340
Query: 235 Q---------------KMQRTKKQKAAYAPHIELLPADKVAVIVMHKMMGLVMAGHEDRC 279
Q K + + Y + +L ADK AV+VMH+++ L++A ++
Sbjct: 341 QEAVWANVTDDNKGTVKTSGSFGGRGTYGAFLVMLKADKQAVLVMHEVVNLILASG-NKG 399
Query: 280 VQVVQAAVHIGMAIEQEIRIHSFLEKTKNYKRKKIIADTEEVLSKEKELLRKRVNSLIKS 339
V V+A + ++ E+ + + K+ K+ + R +V+SL
Sbjct: 400 VSTVRACTRVAELVQAEV---NLMRMKKDGKKGQ----------------RVQVSSLRHV 440
Query: 340 KRV-MEAQKLLKNEETKPWGRDTQAKLGSRLVELLIETAYVQHPVNPADYSP-------- 390
+ V +AQ L E W Q KLG+ L++LLIETA + +
Sbjct: 441 REVNKQAQDALDMLEDTHWPIGAQVKLGAALIKLLIETACWTYDKESGVVTAWDKGGAER 500
Query: 391 ----------PDVRPAFRHRFKTILKHPGQKTTKRYGVVECDPLVLEGLDRSAKHMLIP- 439
P + AF H I+K K +++ + + + +D + P
Sbjct: 501 GGGERDTEGFPMPKAAFVH---DIIKG---KNSRKGSLTMAPEIFSKMVDEDISRLATPR 554
Query: 440 YVPMLVPPKKWKGYNKGGYLFLPSYVMRTHGSRKQQEALKSVTGNCMKKVFEALDTLGST 499
+VPMLVPP W N+GG+L L + +MRT G Q+ AL+ +++V++AL+ LG
Sbjct: 555 FVPMLVPPLDWIKPNRGGFLRLRAQIMRTKGEAAQKHALRRAD---LRQVYKALNCLGKV 611
Query: 500 KWRVNKQVLSVLESIWVSGGNIAGLVDRNDVLIPEKP-------LSEDMTEVQ------- 545
+WR+N VL + + L D+ +P +P L VQ
Sbjct: 612 RWRINGHVLDTVMVCLRDKIAVGDLPVIKDLPLPPRPDGVTVDRLGRLRAPVQGEHEDEE 671
Query: 546 ----------KWKWSVRKAKKINQERHSQRCDTELKLSVARRMKDEEGFYYPHNLDFRGR 595
+K + K K+ N HS RCD ++K+ +A+ +D Y+P+N+DFRGR
Sbjct: 672 VFKERRQKHYAYKRLLEKTKQKNANMHSLRCDMKIKVDIAQEFRDHV-IYFPYNMDFRGR 730
Query: 596 AYPMHPHLNHLSSDVCRGVLEFAEGRPLGKSGLRWLKIHLANLFSGGVEKLSHDGRLAFV 655
YP+ P+LN L SD RGVL F E +PLG+ GL WLK+HLANL+ G +K+S D R+AFV
Sbjct: 731 TYPIPPNLNILGSDFSRGVLVFDEAKPLGEKGLYWLKVHLANLY--GEDKVSFDDRVAFV 788
Query: 656 ENHL----YEIFDSAENPINGSRWWLTAEDPFQCLAACINLSEALKSSSPHSVISHLPIH 711
E H+ E+ DSA P+ G WW A+ P+QCLA C +L+ AL S P +S LP+H
Sbjct: 789 EKHMDESWREVRDSALRPLEGECWWKDADSPWQCLAVCADLTAALDSPDPARYLSRLPVH 848
Query: 712 QDGSCNGLQHYAALGRNTLEAAAVNLVAGEKPADVYSEIAVRVHEIMKRDSNKDPSKHPQ 771
QDGSCNGLQHYAALG + A VNL +P DVYS + V + + +++ P +
Sbjct: 849 QDGSCNGLQHYAALGLDANGGAQVNLSPSPEPQDVYSGVCDVVKKKVALEASTVPPEGAS 908
Query: 772 AL------LAKILIDQVDRKLVKQTVMTSVYGVTFVGAREQIKRRLEEK--GHITD---- 819
+ +AK++ +DRK+VKQTVMTSVYGVTFVGAR QI+ L +K GH +
Sbjct: 909 VVDLANHEIAKMVDGLIDRKVVKQTVMTSVYGVTFVGARAQIQNVLGDKMIGHTDESGVP 968
Query: 820 ----DRQLFAAACYAAKVTLTALGEIFEAARSIMGWLGDCAKVIASENQPVRWTTPLGLP 875
+ ++ A+ Y AK T+T L E+F AR+ M WL ++++A E+QP+ W TPLGLP
Sbjct: 969 SAEVEENVYKASAYVAKHTMTVLEELFTEARNTMDWLKAVSQLVAKEDQPMSWITPLGLP 1028
Query: 876 VVQPYCKNERHLIRTSLQVLALQREGNL--VKIRKQRTAFPPNFVHSLDGSHMMMTAVAC 933
V+QPY + + + ++T LQ + ++ + + V +++Q TAFPPNFVHSLD +HMMMTA+
Sbjct: 1029 VLQPYRRTDTYQVQTLLQGVHIREDSDKLPVAVKRQTTAFPPNFVHSLDSTHMMMTAIEM 1088
Query: 934 RDAGLHFAGL 943
G+ FA +
Sbjct: 1089 DKVGVPFAAV 1098
>gi|452824377|gb|EME31380.1| DNA-directed RNA polymerase, mitochondrial [Galdieria sulphuraria]
Length = 1125
Score = 461 bits (1186), Expect = e-127, Method: Compositional matrix adjust.
Identities = 294/823 (35%), Positives = 443/823 (53%), Gaps = 83/823 (10%)
Query: 178 LRRRQVKQ---------ETEAWERMVDEYKELEAKMIEKRLAPNLPHIKGLFLGWFGPLS 228
+R+RQV+ E + +D ++ L +++ L + L L W PL+
Sbjct: 260 VRKRQVEDPKYAEELRLEFACLQESLDRFRNLLETAVKRGDIGWLSPAQRLILSWLSPLA 319
Query: 229 EAIEREQKMQRTKKQKAAYAPHIELLPADKVAVIVMHKMMGLVMAGHEDRCVQVVQAAVH 288
AI+REQ+ + K H+ L K+A+I + + + L + E + +
Sbjct: 320 FAIKREQQRLKVKISLTKDESHLLRLEPAKLALITIQETLRLTVPRKEG--YPYLSLCLE 377
Query: 289 IGMAIEQEIRIHSF--LEKTKNYKR-------KKIIADTEEVLSKEKELLRKRVNSLIKS 339
+G A++ + L K Y++ K + +T L++ E + I
Sbjct: 378 VGKAVQTQCNAEELERLRKKLQYEQVHQETMENKQVDNTNTTLTESSESKESSNSFRI-- 435
Query: 340 KRVMEAQKLLKNEET-----KP---------------WGRDTQAKLGSRLVELLIETAYV 379
R+ + +KLLK E +P W + T ++GS LV++L++ A
Sbjct: 436 -RLHQLKKLLKRNENDKNGHRPYINLFAYRLTGNAAFWDKLTTLRVGSYLVDMLLKNAPT 494
Query: 380 QHP-VNPADYSPPDVRPAFRHRFKTILKHPGQKTTKRYGVVECDPLVLEGLDRSAKHMLI 438
Q V S AF H+ ++ G K G+V C +V + L R + +
Sbjct: 495 QQVLVRTKASSDSQFVSAFWHK---TVRGNGNKLQ---GLVGCRDIVYDILSRDLSNPFL 548
Query: 439 PYVP----MLVPPKKWKGYNKGGYLFLPSYVMRT-HGSRKQQEALKSVTGNCMKKVFEAL 493
+P M+V PK W G GGYL + S +MR H R Q AL++ + KV+E L
Sbjct: 549 NPLPRLRPMVVVPKPWTGPKTGGYLRIRSDLMRCEHSHRSQWNALRTAN---LSKVYEGL 605
Query: 494 DTLGSTKWRVNKQVLSVLESIWVSGGNIAGLVDRNDVLIPEKPLSE-------DMTEVQK 546
+ LG+T W+VN ++L V E +W GG IAGLV+R + +P+ ++ +MT+++
Sbjct: 606 NALGATPWKVNTKILEVAEELWRRGGGIAGLVNRERIDVPKINFNDFRLLPRNEMTQIRG 665
Query: 547 WKWSVRKAKKINQERHSQRCDTELKLSVARRMKDEEGFYYPHNLDFRGRAYPMHPHLNHL 606
+R+AKK ERH+ C TE+ L AR + FY PHN+DFRGRAYP+ L+H+
Sbjct: 666 ---EIREAKKAVAERHALTCQTEIILQEAREFAKYDVFYLPHNMDFRGRAYPIPSTLHHM 722
Query: 607 SSDVCRGVLEFAE-GRPLGKSGLRWLKIHLANLFSGGVEKLSHDGRLAFVENHLYEIFDS 665
SSD+ RG+L FA G+PLG+ G+ WLK+H+ANL G +K + + R+ + ENH EI
Sbjct: 723 SSDLHRGLLMFASPGKPLGERGVYWLKVHIANL--AGQDKATFEDRVRWTENHSLEIIQV 780
Query: 666 AENPI--NGSRWWLTAEDPFQCLAACINLSEALKSSSPHS-VISHLPIHQDGSCNGLQHY 722
A++P+ N WW T EDPFQ LAAC+ + A + S S +PI DGSCNGLQHY
Sbjct: 781 AQDPLDPNNLEWWSTREDPFQFLAACVEFANAASQGNSMSHYCSSVPIQMDGSCNGLQHY 840
Query: 723 AALGRNTLEAAAVNLVAGEKPADVYSEIAVRVHEIMKRDSNKDPSKHPQALLAKILIDQV 782
AAL R+ A VNL+ +KP DVYS + RV ++++D+ + + AK+ + +
Sbjct: 841 AALARDCEGAFKVNLLPCDKPQDVYSAVCDRVRVMVEKDAERGLEE------AKLALKCL 894
Query: 783 DRKLVKQTVMTSVYGVTFVGAREQIKRRLEEKGHITDDRQLFAAACYAAKVTLTALGEIF 842
RK+VKQTVMTSVYGVT +GAR QI+ RL E + + +F + Y A TL ++G +F
Sbjct: 895 SRKVVKQTVMTSVYGVTLIGARLQIENRLRE-AKLIEKEWIFKVSSYLASRTLESIGNLF 953
Query: 843 EAARSIMGWLGDCAKVIASENQPVRWTTPLGLPVVQPYCKNERHLIRTSLQVLALQ--RE 900
E A M WL +CA+ IA Q V W TPLGLP+ QPY R ++T++Q++++Q E
Sbjct: 954 EVADRTMEWLSECAQKIAHTKQAVSWITPLGLPIYQPYRSKVRLDVKTAMQIVSMQLYDE 1013
Query: 901 GNLVKIRKQRTAFPPNFVHSLDGSHMMMTAVACRDAGLHFAGL 943
++ RKQ TAFPPN++HSLD SHM+MTA AC G++FA +
Sbjct: 1014 SLPIEKRKQMTAFPPNYIHSLDSSHMLMTASACVKEGMYFAAV 1056
>gi|406868664|gb|EKD21701.1| DNA-dependent RNA polymerase [Marssonina brunnea f. sp.
'multigermtubi' MB_m1]
Length = 1461
Score = 460 bits (1184), Expect = e-126, Method: Compositional matrix adjust.
Identities = 278/779 (35%), Positives = 410/779 (52%), Gaps = 104/779 (13%)
Query: 235 QKMQRTKKQKAAYAPHIELLPADKVAVIVMHKMMGLVMAGHEDRCVQVVQAAVHIGMAIE 294
+KM + Y P + LLP DK+A + + M + + D+ + + A + I ++E
Sbjct: 430 KKMLPEDLDRVIYGPFLRLLPPDKLAAVTILSAMTTMSSMGLDKGIPLSNAIMAIAKSVE 489
Query: 295 QEIRIHSFLEKTKNYKRKKIIADTEEVLSKEKELLRKRVNSLIKSKRVMEAQKLLKNE-- 352
E + + +K K I ++ R + L ++ R ++ L+ +
Sbjct: 490 DECAFDTIQKASK----KNIWPNSNN---------RPDIGQLKRATRFRTSKPLIDLDQS 536
Query: 353 ------ETKPWGRDTQAKLGSRLVELLIETAYVQHPVNPADYSPPD-------VRPAFRH 399
E + W +AK+G+ L+ LIE A V P + P+ ++PAF H
Sbjct: 537 ETAEALEDRQWPLAMRAKVGAFLMSALIEVAKV-----PVALTHPETGEIVTQMQPAFCH 591
Query: 400 RFKTILKHPGQKTTKRYGVVECDPLVLEGLDRSAKH-MLIPYVPMLVPPKKWKGYNKGGY 458
+ K K+ GV+ + ++ L R H +L ++PMLV P+ W ++KGG+
Sbjct: 592 AHQ-------YKLGKKVGVIMANKSLVATLKREPVHSLLAKHLPMLVEPEPWSDFSKGGF 644
Query: 459 LFLPSYVMRTHGSRKQQE--ALKSVTGNCMKKVFEALDTLGSTKWRVNKQVLSVLESIWV 516
L PS +MR K Q A ++ M F+ L+ LG T WR+N+QV V+ W
Sbjct: 645 LAHPSKIMRVKTGDKDQRYYAEAAIGQGDMTLTFKGLNVLGKTSWRINQQVFDVMLEAWN 704
Query: 517 SGGNIAGLVDRNDVL--IPEKPLSEDMTEVQKWKWSVRKAKKINQERHSQRCDTELKLSV 574
+G IA + L PE S+D E ++W +V+ + HSQRC +L +
Sbjct: 705 AGDAIANIPPETPNLKAPPEPEASQDPLERRQWIRAVKNVENHRSGLHSQRCFQNFQLEI 764
Query: 575 ARRMKDEEGFYYPHNLDFRGRAYPMHPHLNHLSSDVCRGVLEFAEGRPLGKSGLRWLKIH 634
AR +K EE FY+PHN+DFRGRAYP+ P+LNH+ +D CRG+L F +GR LG+SGLRWLKIH
Sbjct: 765 ARALKHEE-FYFPHNVDFRGRAYPIPPYLNHMGADHCRGLLIFGKGRELGESGLRWLKIH 823
Query: 635 LANLFSGGVEKLSHDGRLAFVENHLYEIFDSAENPINGSRWWLTAEDPFQCLAACINLSE 694
AN+F G +K S R AF H+ ++F++A+NP+ G+RWWL AEDP+Q LAAC+ L
Sbjct: 824 AANVF--GFDKASLSEREAFAMKHMDQMFEAAKNPLGGTRWWLNAEDPWQFLAACMELKN 881
Query: 695 ALKSSSPHSVISHLPIHQDGSCNGLQHYAALGRNTLEAAAVNLVAGEKPADVYSEIAVRV 754
A++S P +SHLP+HQDG+CNGLQHYAALG +T A VNL ++PADVY+ +A V
Sbjct: 882 AMESPDPTRFVSHLPVHQDGTCNGLQHYAALGGDTWGAKQVNLEPADRPADVYTAVADLV 941
Query: 755 HEIMKRDSNKDPSKHPQALLAKILIDQVDRKLVKQTVMTSVYGVTFVGAREQIKRRLEEK 814
E + D K AKIL +V RK+VKQTVMT+VYGVT++GA+ Q++R+L
Sbjct: 942 KESIAEDLANGNQK------AKILEGKVTRKVVKQTVMTNVYGVTYIGAKAQVRRQLVAA 995
Query: 815 GHITDDRQLF---AAACYAAKVTLTALGEIFEAARSIMGWLGDCA--------------- 856
+ ++ + A Y A +AL +F+ A I WLG+CA
Sbjct: 996 FPGLPNNEVINPNSLAAYVATKIFSALSTMFKGAHDIQFWLGECASRISTCLTAEQLTRL 1055
Query: 857 ------------------KVIASENQP------------VRWTTPLGLPVVQPYCKNERH 886
K + P V WTTPL +PVVQPY ++
Sbjct: 1056 DSEWPRLVSEKAGKGPVTKTTGARYTPATLESLTQFKSSVIWTTPLHMPVVQPYRSSKSR 1115
Query: 887 LIRTSLQVLALQR--EGNLVKIRKQRTAFPPNFVHSLDGSHMMMTAVACRDAGLHFAGL 943
+I T++Q + L + V RKQ FPPNF+HSLD +HM+++A+ C GL FA +
Sbjct: 1116 IIVTNMQKINLSEPHRSDPVNKRKQLQGFPPNFIHSLDATHMLLSALECDKHGLSFAAV 1174
>gi|255953185|ref|XP_002567345.1| Pc21g02810 [Penicillium chrysogenum Wisconsin 54-1255]
gi|211589056|emb|CAP95178.1| Pc21g02810 [Penicillium chrysogenum Wisconsin 54-1255]
Length = 1353
Score = 460 bits (1183), Expect = e-126, Method: Compositional matrix adjust.
Identities = 275/748 (36%), Positives = 409/748 (54%), Gaps = 71/748 (9%)
Query: 241 KKQKAAYAPHIELLPADKVAVIVMHKMMGLVMAGHEDRCVQVVQAAVHIGMAIEQEIRIH 300
+K++ Y ++ L D++A + + +M D+ +++ A +G ++ EI
Sbjct: 410 QKERCEYGVFLQALDPDRLAALTLLSVMSCFSRQGMDKGLKLSAIASIVGKELQDEIIAD 469
Query: 301 SFLEKTKNYKRKKIIADTEEVLSKEKELLRKRVNSLIKSKRVMEAQKLLKNEETKPWGRD 360
++L+K K+ ++ A E + +++ + R R SL+ +K+ +E+ WG
Sbjct: 470 TYLKKNKSVDPSRLKALKETLANRKDKQGRLRWRSLV--------EKMNAEDESIIWGSR 521
Query: 361 TQAKLGSRLVELLIETA----YVQHPVNPADYSPPDVRPAFRHRFKTILKHPGQKTTKRY 416
+Q K+G L+ +L+E A + + PV +++PAF H ++ H G KR
Sbjct: 522 SQVKVGGVLMSMLVEVAKAPVWTEDPVTKK--RTLNMQPAFDHSYQI---HFG----KRS 572
Query: 417 GVVECDPLVLEGLDRSA-KHMLIPYVPMLVPPKKWKGYNKGGY-LFLPSYVMRTHGSRKQ 474
G + +++ + + +L ++PM+ PK W G GGY ++ S V T G Q
Sbjct: 573 GHIHMHSKIVDIVAKEPPAEVLARHLPMVCKPKPWTGPRSGGYKIYESSLVRTTPGELLQ 632
Query: 475 QEALKSV-TGNCMKKVFEALDTLGSTKWRVNKQVLSVLESIWVSGGNIAGLVDRN-DVLI 532
LK+V + +K++ LD LG T WR+N+QV V+ W G + L N D+
Sbjct: 633 PAYLKAVLKDDGLKEIRAGLDVLGGTGWRINQQVFEVMLEAWNDGKAVGKLAPLNPDLQA 692
Query: 533 PEKPLSEDMTEVQK-WKWSVRKAKKINQERHSQRCDTELKLSVARRMKDEEGFYYPHNLD 591
PEKP + +Q+ W VR+ + + HS RC +L VAR + +E FY PHN+D
Sbjct: 693 PEKPSPDADYAIQREWNRKVRETENLRSGFHSVRCFQNFQLEVARAFR-KETFYLPHNMD 751
Query: 592 FRGRAYPMHPHLNHLSSDVCRGVLEFAEGRPLGKSGLRWLKIHLANLFSGGVEKLSHDGR 651
FRGRAYP+ P+LN + +D RG+L F +G+ LG SG+RWLKI +ANLF G +K S R
Sbjct: 752 FRGRAYPLPPYLNQMGADNSRGLLLFDKGKALGPSGMRWLKIQIANLF--GFDKASMSER 809
Query: 652 LAFVENHLYEIFDSAENPINGSRWWLTAEDPFQCLAACINLSEALKSSSPHSVISHLPIH 711
F +HL ++ DSA + G RWWL AEDP+Q LAAC L AL+ S P +SHLPIH
Sbjct: 810 EQFTMDHLDDVLDSANTGLRGRRWWLQAEDPWQLLAACCELRNALQLSEPTEYVSHLPIH 869
Query: 712 QDGSCNGLQHYAALGRNTLEAAAVNLVAGEKPADVYSEIAVRVHEIMKRDSNKDPSKHPQ 771
QDGSCNGLQHYAALG + + A VNL ++P+DVY+ + V E + +D+
Sbjct: 870 QDGSCNGLQHYAALGGDRVGAQQVNLEPSDRPSDVYTGVCEFVKEEIAQDAANGND---- 925
Query: 772 ALLAKILIDQVDRKLVKQTVMTSVYGVTFVGAREQIKRRLEEKGHITDDRQLFAAACYAA 831
LAK+L +V+RK+VKQTVMT+VYGVTF+GA Q+KR+L + + +A+ Y +
Sbjct: 926 --LAKLLDGRVNRKIVKQTVMTNVYGVTFLGATRQVKRQLIDYLPDLSGPERNSASFYIS 983
Query: 832 KVTLTALGEIFEAARSIMGWLGDCAKVIASENQP-------------------------- 865
ALG +F A I WLGDCA+ I P
Sbjct: 984 TKIFGALGSMFNGAHEIQYWLGDCAQRITQSVTPEQIEELTQAALVPKDERDEDYSTSID 1043
Query: 866 --------VRWTTPLGLPVVQPYCKNERHLIRTSLQVLAL--QREGNLVKIRKQRTAFPP 915
V WTTPLGLPVVQPY + ++TSLQ ++L ++V RKQ AFPP
Sbjct: 1044 PEKSFRSTVIWTTPLGLPVVQPYRTRKSRRVQTSLQDISLVDPSSDDVVSKRKQLQAFPP 1103
Query: 916 NFVHSLDGSHMMMTAVACRDAGLHFAGL 943
NF+HSLD +HM+M+A AC++AGL F+ +
Sbjct: 1104 NFIHSLDATHMIMSANACQEAGLTFSAV 1131
>gi|367011305|ref|XP_003680153.1| hypothetical protein TDEL_0C00530 [Torulaspora delbrueckii]
gi|359747812|emb|CCE90942.1| hypothetical protein TDEL_0C00530 [Torulaspora delbrueckii]
Length = 1321
Score = 459 bits (1182), Expect = e-126, Method: Compositional matrix adjust.
Identities = 274/736 (37%), Positives = 412/736 (55%), Gaps = 67/736 (9%)
Query: 239 RTKKQKAAYAPHIELLPADKVAVIVMHKMMGLVMAGHEDRCVQVVQAAVHIGMAIEQEIR 298
+ K + Y ++ L+ +K+ VI + +++ L G ++ +A + +G AIE E R
Sbjct: 460 KQNKTRQDYGAYLSLVDPEKMCVITILELLKLNSTGGVIEGMRTARAVIAVGKAIEMEFR 519
Query: 299 IHSFLEKTKNYKRKKIIADTEEVLSKEKELLRKRVNSLIKSKRVMEAQKLLKNEETKP-W 357
L+ +I D + K+ +++ NS + +K EE+K W
Sbjct: 520 SEQLLKS-----ELQIFKDVNRKSHEFKKYVQRAKNSF----------RSIKIEESKVVW 564
Query: 358 GRDTQAKLGSRLVELLIETAYVQ-HPVNPADYSPPDVR-PAFRHRFKTILKHPGQKTTKR 415
+ +AK+GS ++ +LI A V ++P PAF H ++ H G K
Sbjct: 565 PQAARAKIGSIMISMLIHVAKVDLEGIDPVTKQKVHGEAPAFSHGYQY---HNGSK---- 617
Query: 416 YGVVECDPLVLEGLD--RSAKHMLIPYVPMLVPPKKWKGYNKGGYLFLPSYVMRTHGSRK 473
GV++ ++ L+ R + +PMLV P+ WK +N GGY + S ++R+ S +
Sbjct: 618 LGVLKIHRSLIHQLNGERLVASVQPQLLPMLVKPRPWKSWNSGGYYYTQSSLIRSKDSPE 677
Query: 474 QQEALKSVT-GNCMKKVFEALDTLGSTKWRVNKQVLSVLESIWVSGGN---IAGLVDRND 529
Q LK+V+ + V++ L+ LG T W VN++V V+ +W SG + I G+ ++ D
Sbjct: 678 QMAYLKAVSNAGAIDTVYQGLNVLGETAWTVNRRVFDVMSEVWNSGKDFLEIPGIQEKLD 737
Query: 530 VLIPEKPLSEDMTEVQKWKWSVRK-AKKINQERHSQRCDTELKLSVARRMKDEEGFYYPH 588
L+P P D + ++WK ++ A K + R S RCD+ KL +AR E+ FY+PH
Sbjct: 738 -LLPAPPRESDPSVHREWKLKNKEIANKFSSNR-SVRCDSNYKLEIARAFLGEK-FYFPH 794
Query: 589 NLDFRGRAYPMHPHLNHLSSDVCRGVLEFAEGRPLGKSGLRWLKIHLANLFSGGVEKLSH 648
NLDFRGRAYP+ PH NHL +D+ RG+L F +G+ LG GL+WLK+HL+NLF G +K
Sbjct: 795 NLDFRGRAYPLSPHFNHLGNDMSRGLLIFWKGKRLGPRGLKWLKVHLSNLF--GFDKAPL 852
Query: 649 DGRLAFVENHLYEIFDSAENPINGSRWWLTAEDPFQCLAACINLSEALKSSSPHSVISHL 708
R+A+ E HL ++ SAE+P+ G WW+ A+ P+Q LA CI ++EA K +P ISH
Sbjct: 853 ADRIAYAEAHLKDVKRSAEDPLAGDGWWMKADKPWQALATCIEINEAYKLPNPEDFISHQ 912
Query: 709 PIHQDGSCNGLQHYAALGRNTLEAAAVNLVAGEKPADVYSEIAVRVHEIMKRDSNKDPSK 768
P+HQDG+CNGLQHYAALG + A VNLV ++P DVY+ +A V ++ + K +
Sbjct: 913 PVHQDGTCNGLQHYAALGGDIEGATQVNLVPNDRPQDVYAHVAKLVQARLEAAAAKGDEQ 972
Query: 769 HPQALLAKILIDQVDRKLVKQTVMTSVYGVTFVGAREQIKRRLEEKGHITDDRQL-FAAA 827
A+ L D++ RK+VKQTVMT+VYGVT+VGA QI+++L HI DDR +
Sbjct: 973 ------AETLKDKITRKVVKQTVMTNVYGVTYVGATFQIEKQL---SHIFDDRTYSLELS 1023
Query: 828 CYAAKVTLTALGEIFEAARSIMGWLGDCAKVIASE-------------NQP-----VRWT 869
Y K A+ E+F A I WLG+CAK I+ N+P V WT
Sbjct: 1024 KYLTKHVFAAVRELFHGAHLIQDWLGECAKRISKSIRLDVDEKSFKNGNKPDFMSSVIWT 1083
Query: 870 TPLGLPVVQPYCKNERHLIRTSLQVLALQR--EGNLVKIRKQRTAFPPNFVHSLDGSHMM 927
TPLGLP+VQPY + + + T+LQ + + N V R+Q+ FPPNF+HSLD SHM+
Sbjct: 1084 TPLGLPIVQPYREASKKQVTTNLQTVFISDPFSVNPVNARRQKAGFPPNFIHSLDASHML 1143
Query: 928 MTAVACRDAGLHFAGL 943
++A AC + GL FA +
Sbjct: 1144 LSAAACGEEGLDFASV 1159
>gi|363748672|ref|XP_003644554.1| hypothetical protein Ecym_1514 [Eremothecium cymbalariae DBVPG#7215]
gi|356888186|gb|AET37737.1| hypothetical protein Ecym_1514 [Eremothecium cymbalariae DBVPG#7215]
Length = 1298
Score = 459 bits (1180), Expect = e-126, Method: Compositional matrix adjust.
Identities = 314/920 (34%), Positives = 471/920 (51%), Gaps = 94/920 (10%)
Query: 83 QSNFMENIENSVDFHIPTCEQEQNFHQRVENTETCADLVIPRSENSTNHQLMCL----EP 138
QS + +++ + HI E Q + VE T V + H L+ L E
Sbjct: 257 QSTGLLHLKRENERHITATEGLQEDIKSVEKGVTELMSVKTFGMRAVRHSLLGLSISDEQ 316
Query: 139 RRRI--FVQDP------PWFSSIFLKGLYKRIKLQEYR--------EMKKRKFNLLRRRQ 182
R+++ V DP P +SI +YK +K E R E + L R
Sbjct: 317 RKKLNGLVVDPLLKTVVPEHTSIDFFEMYKSLKTDEERVAFDSFLEEFNHERQRDLENRS 376
Query: 183 VKQETEAWERMVDEYKELEAKMIEKRLAPNL-PHIKGLF------LGWFGPLSEAIEREQ 235
V E W +E K I+K L L G++ + L I+ ++
Sbjct: 377 VDAAKERWRHEFEEAKTRGGLNIKKSLNVKLWEWYNGMYPLVREEVKRCKELVNLIDTKK 436
Query: 236 KMQRTKKQKA--AYAPHIELLPADKVAVIVMHKMMGLVMAGHEDRCVQVVQAAVHIGMAI 293
+Q + K KA YAP++ LL +K++VI + +++ L G ++ +A + IG A+
Sbjct: 437 PVQHSPKDKARMEYAPYLTLLNPEKMSVITILELLSLNSTGGVSEGMRTARAVMAIGKAV 496
Query: 294 EQEIRIHSFLEKTKNYKRKKIIADTEEVLSKEKELLRKRVNSLIKSKRVMEAQKLLKNEE 353
E E R + L K++N K + + E K+LL+ + +K +E K+
Sbjct: 497 EMEFRSEALL-KSENQMFKDVSKKSPEF----KKLLQMAKTTFRNTK--IEQSKVF---- 545
Query: 354 TKPWGRDTQAKLGSRLVELLIETAYVQ----HPVNP-ADYSPPDVRPAFRHRFKTILKHP 408
W +AK+GS L+ +LI A V+ PV A Y PA H F+
Sbjct: 546 ---WPYQIRAKIGSLLISMLINVARVEVTGIDPVTKEAVYGEA---PAICHTFQ------ 593
Query: 409 GQKTTKRYGVVECD-PLVLE-GLDRSAKHMLIPYVPMLVPPKKWKGYNKGGYLFLPSYVM 466
+T + GV++ L + G +R + ++PMLV P+ W +N GGY + S ++
Sbjct: 594 -YRTGSKIGVLKLHRSLTYQLGGERLNASVQPQHLPMLVKPRPWTSWNSGGYYYSQSTLI 652
Query: 467 RTHGSRKQQEALKSVTG-NCMKKVFEALDTLGSTKWRVNKQVLSVLESIWVSGGNIAGLV 525
R+ S +Q +K+VTG + +++ L+ LG T W VNK + ++L IW SG +
Sbjct: 653 RSKDSPEQLAYIKAVTGKGAVNNIYQGLNVLGDTAWTVNKPLFTILSKIWNSGEEYLDIP 712
Query: 526 DRND--VLIPEKPLSEDMTEVQKWKWSVRKAKKINQERHSQRCDTELKLSVARRMKDEEG 583
+ D L P+ P D E+++W+ R + + RCD+ KL +AR E+
Sbjct: 713 PQEDDCQLPPKPPRESDPLELKRWRNDCRFKNIEYRGNRAMRCDSNYKLEIARAFLGEK- 771
Query: 584 FYYPHNLDFRGRAYPMHPHLNHLSSDVCRGVLEFAEGRPLGKSGLRWLKIHLANLFSGGV 643
FY+PHN+DFRGRAYP+ PH NHL +D+ R +L F +G+ LG+ GL WLK+HLANL+ G+
Sbjct: 772 FYFPHNMDFRGRAYPLAPHFNHLGNDMTRALLIFWQGKKLGEDGLNWLKVHLANLY--GM 829
Query: 644 EKLSHDGRLAFVENHLYEIFDSAENPINGSRWWLTAEDPFQCLAACINLSEALKSSSPHS 703
+K + R+ F E HL +I DSAENP++G+ WW A+ P+QCLA C+ L +A K +P
Sbjct: 830 DKKPFEDRIKFTEEHLEDIKDSAENPLHGNGWWKKADKPWQCLATCMELRDAYKLENPED 889
Query: 704 VISHLPIHQDGSCNGLQHYAALGRNTLEAAAVNLVAGEKPADVYSEIAVRVHEIMKRDSN 763
ISH P+HQDG+CNGLQHYAALG + A VNLV ++P DVY+ +A V E + + +
Sbjct: 890 FISHQPVHQDGTCNGLQHYAALGGDIEGARQVNLVPSDRPQDVYAFVAKLVTERLTKAAA 949
Query: 764 KDPSKHPQALLAKILIDQVDRKLVKQTVMTSVYGVTFVGAREQIKRRLEEKGHITDDRQL 823
K Q L D ++RK+VK+TVMT+VYGVTFVGA +QI + L E D +
Sbjct: 950 AGDEKAEQ------LKDMINRKVVKRTVMTNVYGVTFVGASQQIDKELREA--FPDKNES 1001
Query: 824 FAAACYAAKVTLTALGEIFEAARSIMGWLGDCAKVIASENQ------------------P 865
+ A Y + ++ E+F AA I WL + AK I+ +
Sbjct: 1002 YDMARYLTRHVFASIRELFHAAHLIQDWLAESAKKISKSVRLDLEIEKGKKLDSSLMMTS 1061
Query: 866 VRWTTPLGLPVVQPYCKNERHLIRTSLQVLALQR--EGNLVKIRKQRTAFPPNFVHSLDG 923
V WT+PLGLPVVQPY ++ I T+LQ + + N + RKQ PPNF+HSLD
Sbjct: 1062 VIWTSPLGLPVVQPYRDIKKRQITTNLQTVFIADPFAVNPIDPRKQMAGLPPNFIHSLDA 1121
Query: 924 SHMMMTAVACRDAGLHFAGL 943
SHM+++A+ C GL FA +
Sbjct: 1122 SHMLLSAIECGSQGLQFAAV 1141
>gi|366991923|ref|XP_003675727.1| hypothetical protein NCAS_0C03720 [Naumovozyma castellii CBS 4309]
gi|342301592|emb|CCC69362.1| hypothetical protein NCAS_0C03720 [Naumovozyma castellii CBS 4309]
Length = 1326
Score = 457 bits (1177), Expect = e-125, Method: Compositional matrix adjust.
Identities = 296/838 (35%), Positives = 447/838 (53%), Gaps = 89/838 (10%)
Query: 158 LYKRIKLQEYREMKKR---KFNLLRRRQVKQET-----EAWERMVDEYKELEAKMIEKRL 209
++K +K E RE + FN R+R ++ E W+ ++ KE I+KRL
Sbjct: 365 IFKTLKNDEERETFENILNDFNQDRQRALESRAADAARERWKHDFEDAKERGDISIQKRL 424
Query: 210 APNL------------PHIKGLFLGWFGPLSEAIEREQKMQRTKKQKAAYAPHIELLPAD 257
L IK S + + K K + AP++ L+ +
Sbjct: 425 NAKLWEWYNDMLPLVKEEIKKAEESIGAMTSSSSNKPPKCAAKKGSDSLSAPYLLLVNPE 484
Query: 258 KVAVIVMHKMMGLVMAGHEDRCVQVVQAAVHIGMAIEQEIRIHSFLEKTKNYKRKKIIAD 317
K+ VI + +++ L G ++ +A + +G AIE E R L+ N +
Sbjct: 485 KMCVIAILELLKLNSTGGVIEGMRTARAVISVGKAIEMEFRSEQLLKSESNIFK------ 538
Query: 318 TEEVLSKEKEL--LRKRVNSLIKSKRVMEAQKLLKNEETKPWGRDTQAKLGSRLVELLIE 375
EV K E L +R +S +V E K++ W + +AK+GS L+ LI
Sbjct: 539 --EVNKKSPEFKKLVQRARQSFRSNQV-EQSKIV-------WPQAIRAKIGSTLISTLIH 588
Query: 376 TAYVQ----HPVNPADYSPPDVRPAFRHRFKTILKHPGQKTTKRYGVVECDPLVLEGLD- 430
A V PV + PAF H ++ + GV++ ++ L+
Sbjct: 589 VAKVDVKGFDPVTKQEVYGK--APAFSHGYQYC-------KGSKLGVIKIHRSLINQLNG 639
Query: 431 -RSAKHMLIPYVPMLVPPKKWKGYNKGGYLFLPSYVMRTHGSRKQQEALKSVT-GNCMKK 488
R + +PMLV P+ W+ + GGY + S ++R+ S +Q LK+V+ + +
Sbjct: 640 ERLIASVQPQLLPMLVKPRPWRNWRSGGYFYSQSTLIRSKESPEQLAYLKAVSDADVIPD 699
Query: 489 VFEALDTLGSTKWRVNKQVLSVLESIWVSGGNIAGL--VDRNDVLIPEKPLSEDMTEVQK 546
V+ L+ LG T W +NK+V V+ +W +G + + + L+P P D +E +K
Sbjct: 700 VYTGLNALGETAWTINKKVFDVISQVWNTGDEFLEIPEIQHDMNLLPPPPRDSDPSEFRK 759
Query: 547 WKWSVRK-AKKINQERHSQRCDTELKLSVARRMKDEEGFYYPHNLDFRGRAYPMHPHLNH 605
WK ++ A KI++ R S RCDT KL +AR E+ FY+PHNLDFRGRAYP+ PH NH
Sbjct: 760 WKLQNKELANKISKNR-SVRCDTNYKLEIARAFLGEK-FYFPHNLDFRGRAYPLSPHFNH 817
Query: 606 LSSDVCRGVLEFAEGRPLGKSGLRWLKIHLANLFSGGVEKLSHDGRLAFVENHLYEIFDS 665
L +D+ RG+L F +G+ LG GL WLKIHL+NL+ G++K D R+ FVE+HL EI +S
Sbjct: 818 LGNDLSRGLLIFWKGKKLGPHGLVWLKIHLSNLY--GMDKAPFDERVRFVEDHLQEIKES 875
Query: 666 AENPINGSRWWLTAEDPFQCLAACINLSEALKSSSPHSVISHLPIHQDGSCNGLQHYAAL 725
AENP+ +WW A+ P+QCLA CI L+EALK +P ISH P+HQDG+CNGLQHYAAL
Sbjct: 876 AENPLTTGKWWKDADKPWQCLATCIELTEALKLDNPEEFISHQPVHQDGTCNGLQHYAAL 935
Query: 726 GRNTLEAAAVNLVAGEKPADVYSEIAVRVHEIMKRDSNKDPSKHPQALLAKILIDQVDRK 785
G + A VNL+ ++P DVY+ +A V + +++ + + +K AKIL+D++ RK
Sbjct: 936 GGDVEGAEQVNLIPHDRPQDVYAHVARLVTKRLEKAALQGDAK------AKILVDKISRK 989
Query: 786 LVKQTVMTSVYGVTFVGAREQIKRRLEEKGHITDDRQLFAAACYAAKVTLTALGEIFEAA 845
+VKQ VMT+VYGVT+VGA QI+++L + D ++ F + Y + E+F +A
Sbjct: 990 VVKQPVMTNVYGVTYVGATFQIEKQLSK--FFPDRKECFDLSKYLTSHVFATIRELFHSA 1047
Query: 846 RSIMGWLGDCA-------------KVIASENQP-----VRWTTPLGLPVVQPYCKNERHL 887
I WLG+CA K + ++P V WTTPLGLP+VQPY + +
Sbjct: 1048 HLIQDWLGECANRITKSIRLDVDGKAFKNGDKPDFMSSVIWTTPLGLPIVQPYREASKKQ 1107
Query: 888 IRTSLQVLALQR--EGNLVKIRKQRTAFPPNFVHSLDGSHMMMTAVACRDAGLHFAGL 943
+ T+LQ + + N V R+Q+ FPPNF+HSLD SHM+++A+ CR GL FA +
Sbjct: 1108 VMTNLQTVFISDPFAVNGVNARRQKAGFPPNFIHSLDASHMLLSAIQCRANGLEFASV 1165
>gi|294656558|ref|XP_002770286.1| DEHA2D08866p [Debaryomyces hansenii CBS767]
gi|199431562|emb|CAR65641.1| DEHA2D08866p [Debaryomyces hansenii CBS767]
Length = 1312
Score = 457 bits (1176), Expect = e-125, Method: Compositional matrix adjust.
Identities = 297/841 (35%), Positives = 442/841 (52%), Gaps = 95/841 (11%)
Query: 157 GLYKRIKLQEYREMKKRKFNLL---RRRQVKQETEAWERMVDEYKEL---EAKMIEKRLA 210
+YK +K E RE +L R+RQ++ R VD KE E + ++KR A
Sbjct: 352 AVYKCLKTDEQREKFNEALDLFNEGRQRQLEL------RGVDGAKEKWKHEFEDMQKRGA 405
Query: 211 PNL-PHIKGLFLGWFGPLSEAIEREQKM------------------QRTKKQKAAYAPHI 251
NL + W+ L +E E + K +A YAP++
Sbjct: 406 INLHKSLNVQLFKWYSDLLPYVEEEVNQCKKILDGEISLDNVKPDAKNLMKDRAYYAPYL 465
Query: 252 ELLPADKVAVIVMHKMMGLVMAGHEDRCVQVVQAAVHIGMAIEQEIRIHSFLEKTKNYKR 311
L+P K+ VI + +++ L G ++ +A + +G A+E E + + ++
Sbjct: 466 TLIPPKKMCVITILELLKLNSTGGIVDGMRTARAVISVGKALELEYKSQNLMKAEGRSLS 525
Query: 312 KKIIADTEEVLSKEKELLRKRVNSLIKSKRVMEAQKLLKNEETKPWGRDTQAKLGSRLVE 371
KK+ + S+ K+LLR+R R Q + N E W AK+GS L
Sbjct: 526 KKL-----KTTSQWKKLLRQR--------RDYNKQDPIANNE---WDYPIYAKVGSVLTS 569
Query: 372 LLIETAYVQHPVNPADYSP----PDVRPAFRHRFKTILKHPGQKTTKRYGVVEC-DPLVL 426
LLI A V PV D + ++PAF H ++ + GQ R GV++ LV
Sbjct: 570 LLIHVAKV--PVKGTDPTTGKEVKGMQPAFHHTYQYL---QGQ----RLGVLKVHKSLVR 620
Query: 427 EGLDRSAKHMLIP-YVPMLVPPKKWKGYNKGGYLFLPSYVMRTHGSRKQQEALKSVTGNC 485
+ + + P +PMLVPP+ W YN GGYLF + ++R S + LK+ +
Sbjct: 621 QLAGNVLGNSVQPQMLPMLVPPRPWTSYNDGGYLFSQNSLVRIKDSAETNAYLKAASDLD 680
Query: 486 MKKVFEALDTLGSTKWRVNKQVLSVLESIWVSGG---NIAGLVDRNDVLIPEKPLSEDMT 542
++++ L+ LG T W VN+ V +++ W +G +I +V+ + L + P++ +
Sbjct: 681 NLEIYDGLNVLGDTAWTVNRNVFNIISKFWNTGEKFLDIPPIVEEPE-LPKQLPMNAEPF 739
Query: 543 EVQKWKWSVRKAKKINQERHSQRCDTELKLSVARRMKDEEGFYYPHNLDFRGRAYPMHPH 602
E +++ VRKA SQRCDT KL +AR E+ ++PHN+DFRGRAYP+ H
Sbjct: 740 EKAEYQRKVRKAMNEAASARSQRCDTNYKLEIARGFLGEK-LFFPHNVDFRGRAYPLSAH 798
Query: 603 LNHLSSDVCRGVLEFAEGRPLGKSGLRWLKIHLANLFSGGVEKLSHDGRLAFVENHLYEI 662
LNHL +D+ R + F EGR +G GL WLKIHLAN++ G++K + R+ FV+++L I
Sbjct: 799 LNHLGNDMTRSLFLFWEGREVGDEGLNWLKIHLANVY--GIDKAPLNERIQFVDDNLENI 856
Query: 663 FDSAENPINGSRWWLTAEDPFQCLAACINLSEALKSSSPHSVISHLPIHQDGSCNGLQHY 722
+ A NPINGS WW E P+Q L+ C L+EA + P +SH+P+HQDG+CNGLQHY
Sbjct: 857 LECARNPINGSGWWKKGEKPWQVLSVCFELNEAFQLDDPTKFVSHIPVHQDGTCNGLQHY 916
Query: 723 AALGRNTLEAAAVNLVAGEKPADVYSEIAVRVHEIMKRDSNKDPSKHPQALLAKILIDQV 782
AALG + A VNL+ +KP DVY+ +A V + + D A L D++
Sbjct: 917 AALGGDIEGARQVNLIPADKPQDVYTFVAGLVQKRV------DAEAEAGNKYAIFLQDKI 970
Query: 783 DRKLVKQTVMTSVYGVTFVGAREQIKRRLEEKGHITDDRQLFAAACYAAKVTLTALGEIF 842
RK+VKQTVMT+VYGVTFVGA QI+++++ D + A Y ++ E+F
Sbjct: 971 TRKVVKQTVMTNVYGVTFVGAVLQIQKQIDHYFDKNDTENVDEYARYLTAHVFASIRELF 1030
Query: 843 EAARSIMGWLGDCAKVIA-------------SENQP-----VRWTTPLGLPVVQPYCKNE 884
E A I WLG+ AK I+ + N+P V WTTPLGLP VQPY +
Sbjct: 1031 EGAHLIQDWLGESAKRISKSVRIDYEEKSSKNSNKPSHLSSVIWTTPLGLPCVQPYRVTK 1090
Query: 885 RHLIRTSLQVLALQRE--GNLVKIRKQRTAFPPNFVHSLDGSHMMMTAVACRDAGLHFAG 942
+ +I T+LQ + + + V RKQ+ AFPPN+VHSLD +HM+MTA AC ++GL FA
Sbjct: 1091 KQIISTNLQDIVISDPFGASQVDARKQQAAFPPNYVHSLDATHMLMTAKACAESGLSFAS 1150
Query: 943 L 943
+
Sbjct: 1151 V 1151
>gi|448089097|ref|XP_004196715.1| Piso0_003940 [Millerozyma farinosa CBS 7064]
gi|448093284|ref|XP_004197746.1| Piso0_003940 [Millerozyma farinosa CBS 7064]
gi|359378137|emb|CCE84396.1| Piso0_003940 [Millerozyma farinosa CBS 7064]
gi|359379168|emb|CCE83365.1| Piso0_003940 [Millerozyma farinosa CBS 7064]
Length = 1317
Score = 457 bits (1176), Expect = e-125, Method: Compositional matrix adjust.
Identities = 269/735 (36%), Positives = 407/735 (55%), Gaps = 71/735 (9%)
Query: 242 KQKAAYAPHIELLPADKVAVIVMHKMMGLVMAGHEDRCVQVVQAAVHIGMAIEQEIRIHS 301
K + YAP++ L+P K+ VI + +++ L G ++ +A + +G A+E E +
Sbjct: 460 KDRLYYAPYLILVPPKKMCVITILELLKLNSTGGIIDGMRTARAVISVGRALELEYK--- 516
Query: 302 FLEKTKNYKRKKIIADTEEVLSKEKELLRKRVNSLIKSKRVMEAQKLLKNEE---TKPWG 358
++ ++ E L K++ + + KR + +K E+ W
Sbjct: 517 ----------------SQRLMQAEGRSLSKKLKTTNQWKRFLRQRKDYNKEDPIANNEWD 560
Query: 359 RDTQAKLGSRLVELLIETAYVQHPVNPADYSPP----DVRPAFRHRFKTILKHPGQKTTK 414
AK+GS L LLI A V PV D + ++PAF H ++ GQK
Sbjct: 561 YPIYAKVGSVLASLLIHVAKV--PVKGTDPTTGKTVRGMQPAFHHTYQFF---QGQKL-- 613
Query: 415 RYGVVECDPLVLEGL--DRSAKHMLIPYVPMLVPPKKWKGYNKGGYLFLPSYVMRTHGSR 472
GV++ ++ L + + +PMLVPP+ W+ YN GGYLF + ++R S
Sbjct: 614 --GVLKVHKSLVRQLAGNELGNSVQPQLLPMLVPPRPWRSYNDGGYLFSQNNIVRIKDSA 671
Query: 473 KQQEALKSVTG-NCMKKVFEALDTLGSTKWRVNKQVLSVLESIWVSGG---NIAGLVDRN 528
+ L++ + N + +++ L+ LG+T W VN++V V+ +W +G +I +++
Sbjct: 672 ETTAYLRAASDMNNLDPIYDGLNVLGNTAWTVNRKVFDVISKVWNTGEEYLDIPPIIEEP 731
Query: 529 DVLIPEKPLSEDMTEVQKWKWSVRKAKKINQERHSQRCDTELKLSVARRMKDEEGFYYPH 588
D+ P PL+ + +E ++ VRKA SQRCDT KL +AR E+ ++PH
Sbjct: 732 DLPSP-LPLNAEPSEKADYQRRVRKAVNDAASARSQRCDTNYKLEIARGFIGEK-LFFPH 789
Query: 589 NLDFRGRAYPMHPHLNHLSSDVCRGVLEFAEGRPLGKSGLRWLKIHLANLFSGGVEKLSH 648
N+DFRGRAYP+ PH NHL +D+ R + F +G+ LG+ GLRWLKIHLAN++ GV+K
Sbjct: 790 NVDFRGRAYPISPHFNHLGNDMTRSLFLFWDGKKLGEQGLRWLKIHLANVY--GVDKAPL 847
Query: 649 DGRLAFVENHLYEIFDSAENPINGSRWWLTAEDPFQCLAACINLSEALKSSSPHSVISHL 708
D R+ FVE++L IFDSA+NP++G +WW + P+Q L+ C LSEA K P +SH+
Sbjct: 848 DERVKFVEDNLDNIFDSAKNPLDGRKWWEKGDKPWQVLSVCFELSEAYKLDDPTEYVSHI 907
Query: 709 PIHQDGSCNGLQHYAALGRNTLEAAAVNLVAGEKPADVYSEIAVRVHEIMKRDSNKDPSK 768
P+HQDG+CNGLQHYAALG + A VNL+ E+P DVY +A V + + ++ K
Sbjct: 908 PVHQDGTCNGLQHYAALGGDIEGARQVNLIPAERPQDVYKFVAGLVQKRVDAEAEKGNK- 966
Query: 769 HPQALLAKILIDQVDRKLVKQTVMTSVYGVTFVGAREQIKRRLEEKGHITDDRQLFAAAC 828
A L D++ RK+VKQTVMT+VYGVTFVGA QI+++++ D ++ +
Sbjct: 967 -----YAIFLRDKITRKVVKQTVMTNVYGVTFVGAVLQIQKQIDHHFGKDDSDKVEEYSR 1021
Query: 829 YAAKVTLTALGEIFEAARSIMGWLGDCAKVIA-------------SENQP-----VRWTT 870
Y ++ E+F A I WLG+ A+ I+ + N+P V WTT
Sbjct: 1022 YLTNHVFDSMRELFLGAHLIQDWLGESARRISKSVRIDYEEKASVNSNKPRHLSSVIWTT 1081
Query: 871 PLGLPVVQPYCKNERHLIRTSLQ--VLALQREGNLVKIRKQRTAFPPNFVHSLDGSHMMM 928
PLGLP VQPY ++ +I T+LQ V++ + V RKQ+ AFPPNFVHSLD +HM+M
Sbjct: 1082 PLGLPCVQPYRVTKKQIISTNLQDIVISDPFGASQVDARKQQAAFPPNFVHSLDATHMLM 1141
Query: 929 TAVACRDAGLHFAGL 943
TA AC GL FA +
Sbjct: 1142 TAAACGKDGLSFASV 1156
>gi|367000748|ref|XP_003685109.1| hypothetical protein TPHA_0D00310 [Tetrapisispora phaffii CBS 4417]
gi|357523407|emb|CCE62675.1| hypothetical protein TPHA_0D00310 [Tetrapisispora phaffii CBS 4417]
Length = 1322
Score = 457 bits (1176), Expect = e-125, Method: Compositional matrix adjust.
Identities = 290/821 (35%), Positives = 450/821 (54%), Gaps = 84/821 (10%)
Query: 164 LQEYREMKKRKFNLLRRRQVKQETEAWERMVDEYKELEAKMIEKRL--------APNLPH 215
L E+ + ++R L R E W+ +E K I+K L LP+
Sbjct: 384 LNEFNQDRQRALEL---RATNAAKERWKYDFEEAKARGDISIKKNLNVKLWEWYTKMLPY 440
Query: 216 IKGLFLGWFGPLSEAIEREQKMQRTKKQKAAYAPHIELLPADKVAVIVMHKMMGLVMAGH 275
+K + + + E++ + R + + YAP+ L+ +K+ VI + +++ L G
Sbjct: 441 VKQE-IEKCKEVMNSTEKKSTVSRQNRLRMEYAPYFTLVDPEKMCVITILELLKLNSTGG 499
Query: 276 EDRCVQVVQAAVHIGMAIEQEIRIHSFLEKTKNYKRKKIIADTEEVLSKEKELLRKRVNS 335
++ +A + +G AIE E R L K +++ K+I K+ + L++ V S
Sbjct: 500 IIEGMRTARAVIAVGKAIEMEFRSEQLL-KNESHIFKEI---------KQSQNLKRFVRS 549
Query: 336 LIKSKRVMEAQKLLKNEETKP-WGRDTQAKLGSRLVELLIETAYVQ----HPVNPADYSP 390
R +K E++K W + +AK+GS ++ LI A ++ PV
Sbjct: 550 AKSRFRS------IKIEQSKIIWSQPARAKIGSIMISNLINVAKIEVGGMDPVTKEKVYG 603
Query: 391 PDVRPAFRHRFKTILKHPGQKTTKRYGVVECDPLVLEGLD--RSAKHMLIPYVPMLVPPK 448
PAF H ++ H G K GV++ ++ L+ R + +PMLV P+
Sbjct: 604 E--VPAFSHSYQY---HNGLK----LGVLKIHKSLVHQLNGERMVAAVQPQLLPMLVAPR 654
Query: 449 KWKGYNKGGYLFLPSYVMRTHGSRKQQEALKSVT-GNCMKKVFEALDTLGSTKWRVNKQV 507
+WK + GGY + S ++R+ S +Q LK+V+ + +V+ L+ LGST W VN+++
Sbjct: 655 EWKNWKCGGYYYTQSTLIRSKDSPEQVAYLKAVSDAGAIDRVYHGLNVLGSTPWTVNRKI 714
Query: 508 LSVLESIWVSGG---NIAGLVDRNDVLIPEKPLSEDMTEVQKWKWSVRK-AKKINQERHS 563
+V+ +W +G +I G+ + + L+P D + +++WK + A K + R S
Sbjct: 715 FNVISEVWNTGKPFLDIPGIQNTLN-LLPPPAKDADPSIIRQWKLKNKDIANKFSSNR-S 772
Query: 564 QRCDTELKLSVARRMKDEEGFYYPHNLDFRGRAYPMHPHLNHLSSDVCRGVLEFAEGRPL 623
RCD+ KL +AR E+ Y+PHNLDFRGRAYP+ PH NHL +D+ RG+L F G+ L
Sbjct: 773 VRCDSNYKLEIARAFLGEK-IYFPHNLDFRGRAYPLSPHFNHLGNDMSRGLLIFWRGKQL 831
Query: 624 GKSGLRWLKIHLANLFSGGVEKLSHDGRLAFVENHLYEIFDSAENPINGSRWWLTAEDPF 683
G SGL+WLK+HL+NL+ G +K S + R+ F E ++ I DSAENP+NG WW +A+ P+
Sbjct: 832 GASGLKWLKVHLSNLY--GFDKASLEDRVRFAEENMENIKDSAENPLNGKGWWKSADKPW 889
Query: 684 QCLAACINLSEALKSSSPHSVISHLPIHQDGSCNGLQHYAALGRNTLEAAAVNLVAGEKP 743
Q L+ CI L+EA K +P ISH P+HQDG+CNGLQHYAALG + A VNL +KP
Sbjct: 890 QALSTCIELNEAFKLENPEDFISHQPVHQDGTCNGLQHYAALGGDCEGAKQVNLKPSDKP 949
Query: 744 ADVYSEIAVRVHEIMKRDSNKDPSKHPQALLAKILIDQVDRKLVKQTVMTSVYGVTFVGA 803
DVY +A V E +K+++ K AK+L D++ RK+VKQTVMT+VYGVT+VGA
Sbjct: 950 MDVYKYVANLVVERLKKEAAGGDEK------AKVLQDKITRKVVKQTVMTNVYGVTYVGA 1003
Query: 804 REQIKRRLEEKGHITDDR-QLFAAACYAAKVTLTALGEIFEAARSIMGWLGDCAKVIA-- 860
QI ++L + + ++R Q + Y + A+ E+F A I WLG+C+ I+
Sbjct: 1004 TFQIDKQLSD---VFENRNQSLELSKYLTRHVFMAIRELFHGAHLIQDWLGECSNKISRS 1060
Query: 861 -----------SENQP-----VRWTTPLGLPVVQPYCKNERHLIRTSLQVLALQR--EGN 902
++N+P V WTTPLGLP+VQPY + + +RT+LQ + + N
Sbjct: 1061 IRLDVNEKSFKNQNKPDFMSSVIWTTPLGLPIVQPYREGSKKQVRTNLQTVFISDPFSIN 1120
Query: 903 LVKIRKQRTAFPPNFVHSLDGSHMMMTAVACRDAGLHFAGL 943
V R+Q+ FPPNF+HSLD SHM+++A AC + GL FA +
Sbjct: 1121 PVNARRQKAGFPPNFIHSLDASHMLLSASACGEKGLDFASV 1161
>gi|327353367|gb|EGE82224.1| DNA-directed RNA polymerase [Ajellomyces dermatitidis ATCC 18188]
Length = 1393
Score = 456 bits (1173), Expect = e-125, Method: Compositional matrix adjust.
Identities = 287/832 (34%), Positives = 435/832 (52%), Gaps = 103/832 (12%)
Query: 181 RQVKQETEAWERMVDEYKELEAKMIEKRLAPNLPH--IKGLFLGWFGPLSEAIE------ 232
RQ + E++ + + +++ E++M++K +P + L W L I
Sbjct: 366 RQRRLESDCVDSAIARWRK-ESEMLQKVGVNPIPSKPMGALLYDWHTQLMSRINEELELI 424
Query: 233 ----REQKMQRTKKQKAAYAPHIELLPADKVAVIVMHKMMGLVMAGHEDRCVQVVQAAVH 288
++ +M Q+ +P++ + DK+A + + + D+ V++ ++
Sbjct: 425 EESEKKSRMLPADSQRVEISPYLRAIKTDKLAALTILSTFNALNKSGVDKGVKLTALVMY 484
Query: 289 IGMAIEQE---IRIHSFLEKTKNYKRKKIIADTEEVLSKEKELLRKRVNSLIKSKRVMEA 345
+G AI E +++ +K+K+ +R + D K V+ K +V
Sbjct: 485 LGKAIYDEYLAMQLRELEKKSKSPRRTSALID-------------KLVHKGTKKAQVQWQ 531
Query: 346 QKLLKNEETK---PWGRDTQAKLGSRLVELLIETAYVQHPVNPADYSPPDVRPAFRHRFK 402
+ + + EE++ W QAK+G+ L +L+ TA V PV+ D S + + F+
Sbjct: 532 RIIARFEESQRPVDWSPVVQAKIGACLASMLLSTATV--PVSTKDPSTNRTQRTDQAAFR 589
Query: 403 TILKHPGQKTTKRYGVVECDPLVLEGLDRSA-KHMLIPYVPMLVPPKKWKGYNKGGYLFL 461
+ + + R G V + ++E L R +L ++PM+ PP+ W +GG+L
Sbjct: 590 RVYQ---LERGFRVGYVHANDHIVEKLRREPLGELLAKHLPMVCPPRPWTSAREGGFLEY 646
Query: 462 PSYVMRTH-GSRKQQEALKSVTGNC-MKKVFEALDTLGSTKWRVNKQVLSVLESIWVSGG 519
PS VMR G Q +++ + VF L LG T W++N+ VL V+ W SG
Sbjct: 647 PSAVMRVKAGDISQLSYVETAAARGDLDTVFAGLTVLGKTGWKINRGVLEVMLEAWNSGE 706
Query: 520 NIAGLVDRN-DVLIPEKPLSEDMTEVQKWKWSVRKAKKINQERHSQRCDTELKLSVARRM 578
IA L N +++ PEKP ++D ++ + + A HSQRC +L +AR
Sbjct: 707 EIANLAPENPNIIEPEKPETDDRDILKDYYRAKIHAANTRTGYHSQRCFQNFQLEIARAY 766
Query: 579 KDEEGFYYPHNLDFRGRAYPMHPHLNHLSSDVCRGVLEFAEGRPLGKSGLRWLKIHLANL 638
++E FY PHNLDFRGRAYPM P+ N + +D CRG+L F++GR LG SGLRWLKIHLAN+
Sbjct: 767 RNET-FYLPHNLDFRGRAYPMPPYFNQMGADHCRGLLLFSKGRELGTSGLRWLKIHLANV 825
Query: 639 FSGGVEKLSHDGRLAFVENHLYEIFDSAENPINGSRWWLTAEDPFQCLAACINLSEALKS 698
F G +K S R F +HL +I DSA N + G +WWL A DPFQCLAACI L+ A+
Sbjct: 826 F--GYDKASFQEREQFAMDHLEDIRDSAINGLKGKKWWLDAGDPFQCLAACIELTNAMAL 883
Query: 699 SSPHSVISHLPIHQDGSCNGLQHYAALGRNTLEAAAVNLVAGEKPADVYSEIAVRVHEIM 758
P +SHLP+HQDGSCNGLQHYAALG + + A VNL ++P+D+Y+ +A V + +
Sbjct: 884 EDPTKFVSHLPVHQDGSCNGLQHYAALGGDIIGAQQVNLEPSDRPSDIYTGVAEHVKQSI 943
Query: 759 KRD-SNKDPSKHPQALLAKILIDQVDRKLVKQTVMTSVYGVTFVGAREQIKRRLEEKGHI 817
++D +N D + AK+L D++ RK+VKQTVMT+VYGVTF+GA Q++++L + H
Sbjct: 944 QKDAANGDQT-------AKLLEDKITRKIVKQTVMTNVYGVTFLGAIRQVRKQLVD--HY 994
Query: 818 TDDRQLFAA------ACYAAKVTLTALGEIFEAARSIMGWLGDCAKVIASENQP------ 865
D LF + A Y A+ ALG +F A I WLGDCA I+ P
Sbjct: 995 PD---LFHSGVAGECATYIARKIFVALGSMFTGAHDIQFWLGDCANRISQSLSPEQIEAL 1051
Query: 866 --------------------------------VRWTTPLGLPVVQPYCKNERHLIRTSLQ 893
V WTTPL LPV QPY + + LQ
Sbjct: 1052 ADEQNLKVVGRFQGAKKMAKNIKDPKYHFKSTVVWTTPLKLPVAQPYRDAASIKVYSDLQ 1111
Query: 894 VLALQ--REGNLVKIRKQRTAFPPNFVHSLDGSHMMMTAVACRDAGLHFAGL 943
L+++ + ++V RKQ AFPPNFVHSLD +HM ++AV C + GL F+ +
Sbjct: 1112 QLSIRNPQASDIVNKRKQLQAFPPNFVHSLDATHMFLSAVKCDELGLSFSAV 1163
>gi|145499932|ref|XP_001435950.1| hypothetical protein [Paramecium tetraurelia strain d4-2]
gi|124403087|emb|CAK68553.1| unnamed protein product [Paramecium tetraurelia]
Length = 1035
Score = 456 bits (1172), Expect = e-125, Method: Compositional matrix adjust.
Identities = 292/822 (35%), Positives = 446/822 (54%), Gaps = 92/822 (11%)
Query: 178 LRRRQVKQETEAWERMVDEYKELEAKMIEKRLAPNLPHIKGLFLGWFGPLSEAIEREQK- 236
L RQ+ E + E +D ++++ + + A +L + + WF L +++EQ
Sbjct: 181 LFERQLIIEQVSNELALDRFQQVFDDLQKMSKAQHLFAAQKYIVEWFPKLCALVQQEQIQ 240
Query: 237 -MQRTKKQKAAYAPHIELLPADKVAVIVMHKMMGLVMAG----HEDR----CVQ--VVQA 285
K++ Y +I + ++K+A+I + ++M + HE++ C Q V +
Sbjct: 241 CFSDPNKEQQGYHQYITAIQSEKLAIIALSELMKEFIEAAVLFHEEKTTLNCYQIRVTRL 300
Query: 286 AVHIGMAIEQEIRIHSFLEKTKNYKRK------KIIAD-------TEEVLSKEKELLRKR 332
A IG EQ ++ H + E+ KN +RK K+I + +EE + +KEL K+
Sbjct: 301 ANRIG---EQIMKQHLYEEEQKNLRRKSKEDIQKMIEEGTVPQDQSEEEIQNQKELFYKQ 357
Query: 333 VNSLIKSKRVMEAQKLLKNEETK-------------PWG----RDTQAKLGSRLVELLIE 375
V++A KLLK ++ K +G +D A++G LV L++
Sbjct: 358 A--------VVKAGKLLKTQQEKLRERIRNNRVYLAKYGQAMPKDIAAQIGMVLVHFLVD 409
Query: 376 TAYVQH------PVNPADYSP--PDVRPAFRHRFKTILKHPGQKTTKRYGVVECDPLVLE 427
+ ++ PV Y D+ A + + L H K D
Sbjct: 410 SIKFRNENNFWVPVLVQGYKKVKQDIEVAIFNVNQLFLHHLSAGMHK-------DNSYFM 462
Query: 428 GLDRSAKHMLIPYVPMLVPPKKWKGYNKGGYLFLPSYVMRTHGSRKQQEALKSVTGNCMK 487
LDR+ +PM+ PP KW GGY P+ ++R Q+EA K ++
Sbjct: 463 HLDRA--------LPMIYPPAKWMDTQIGGYYLKPTNLIRIQDQSLQEEAAKRAN---LQ 511
Query: 488 KVFEALDTLGSTKWRVNKQVLSVLESIWVSGGNIAGLVDR--NDVLIPEKPLSEDMTEVQ 545
+++ LD + WRVN +VL++ +W GG IA + R + + E + E +
Sbjct: 512 NLYDILDNISKVAWRVNNKVLNIAMQVWEQGGGIAEVPKRQHDKTYVFEHQIKE--CKSY 569
Query: 546 KWKWSVRKAKKINQERHSQRCDTELKLSVARRMKDEEGFYYPHNLDFRGRAYPMHPHLNH 605
+ K+ + K + ++ +S +CD LKL VA + Y+PHN+DFRGR YP+ PHLNH
Sbjct: 570 EEKYQLLKMIQSQRDLYSLQCDFTLKLGVALAFNGCQKIYFPHNMDFRGRLYPIPPHLNH 629
Query: 606 LSSDVCRGVLEFAEGRPLGKSGLRWLKIHLANLFSGGVEKLSHDGRLAFVENHLYEIFDS 665
+ D+ RG+LEF+EG+ LGKSGLRWLKIHLAN G +KLS + R A+V+ ++ I
Sbjct: 630 MGPDIARGLLEFSEGKKLGKSGLRWLKIHLAN--KMGKDKLSMEDREAYVDQNVDSIIKC 687
Query: 666 AENPINGSRWWLTAEDPFQCLAACINLSEALKSSSPHSVISHLPIHQDGSCNGLQHYAAL 725
AE+PI W ED +Q LAA + A+KS +P SHL +HQDGSCNGLQHYAAL
Sbjct: 688 AEDPIKYQD-WAQLEDAWQSLAAMFDYVAAIKSPNPEEYESHLHVHQDGSCNGLQHYAAL 746
Query: 726 GRNTLEAAAVNLVAGEKPADVYSEIAVRVHEIMKRDSNKDPSKHPQALLAKILIDQVDRK 785
GR+ A VNL KP DVY+ +A V ++ D+ SK ++A L +Q+ RK
Sbjct: 747 GRDVEGATQVNLANTSKPGDVYTHVAGMVERRVEFDAKDSLSK--DHIIALKLQNQIKRK 804
Query: 786 LVKQTVMTSVYGVTFVGAREQIKRRLEEKGHITDDRQL-FAAACYAAKVTLTALGEIFEA 844
+VKQTVMTSVYGVTF+GAREQI R+L++KG I +D L + A+ Y A++TL A+ ++FE
Sbjct: 805 IVKQTVMTSVYGVTFIGAREQIHRQLKDKGIIGEDEHLQYQASIYLARITLDAIKDLFEG 864
Query: 845 ARSIMGWLGDCAKVIASENQPVRWTTPLGLPVVQPY-CKNERHLIRTSLQVLALQREGNL 903
A I WL CA +I++ENQPV W TPLGLPV+QPY N+ ++T + ++++ +
Sbjct: 865 AHKIKQWLIKCATIISNENQPVSWITPLGLPVIQPYRSLNKYDEVKTLISNVSIESDAAY 924
Query: 904 VKIR--KQRTAFPPNFVHSLDGSHMMMTAVACRDAGLHFAGL 943
+ I KQR+AFPPNF+HSLD +H+M +++ C G+ FA +
Sbjct: 925 LPINKVKQRSAFPPNFIHSLDSTHLMYSSIECLKQGITFAAV 966
>gi|261193289|ref|XP_002623050.1| mitochondrial DNA-directed RNA polymerase [Ajellomyces dermatitidis
SLH14081]
gi|239588655|gb|EEQ71298.1| mitochondrial DNA-directed RNA polymerase [Ajellomyces dermatitidis
SLH14081]
gi|239614020|gb|EEQ91007.1| mitochondrial DNA-directed RNA polymerase [Ajellomyces dermatitidis
ER-3]
Length = 1382
Score = 455 bits (1170), Expect = e-125, Method: Compositional matrix adjust.
Identities = 287/832 (34%), Positives = 435/832 (52%), Gaps = 103/832 (12%)
Query: 181 RQVKQETEAWERMVDEYKELEAKMIEKRLAPNLPH--IKGLFLGWFGPLSEAIE------ 232
RQ + E++ + + +++ E++M++K +P + L W L I
Sbjct: 366 RQRRLESDCVDSAIARWRK-ESEMLQKVGVNPIPSKPMGALLYDWHTQLMSRINEELELI 424
Query: 233 ----REQKMQRTKKQKAAYAPHIELLPADKVAVIVMHKMMGLVMAGHEDRCVQVVQAAVH 288
++ +M Q+ +P++ + DK+A + + + D+ V++ ++
Sbjct: 425 EESEKKSRMLPADSQRVEISPYLRAIKTDKLAALTILSTFNALNKSGVDKGVKLTALVMY 484
Query: 289 IGMAIEQE---IRIHSFLEKTKNYKRKKIIADTEEVLSKEKELLRKRVNSLIKSKRVMEA 345
+G AI E +++ +K+K+ +R + D K V+ K +V
Sbjct: 485 LGKAIYDEYLAMQLRELEKKSKSPRRTSALID-------------KLVHKGTKKAQVQWQ 531
Query: 346 QKLLKNEETK---PWGRDTQAKLGSRLVELLIETAYVQHPVNPADYSPPDVRPAFRHRFK 402
+ + + EE++ W QAK+G+ L +L+ TA V PV+ D S + + F+
Sbjct: 532 RIIARFEESQRPVDWSPVVQAKIGACLASMLLSTATV--PVSTKDPSTNRTQRTDQAAFR 589
Query: 403 TILKHPGQKTTKRYGVVECDPLVLEGLDRSA-KHMLIPYVPMLVPPKKWKGYNKGGYLFL 461
+ + + R G V + ++E L R +L ++PM+ PP+ W +GG+L
Sbjct: 590 RVYQ---LERGFRVGYVHANDHIVEKLRREPLGELLAKHLPMVCPPRPWTSAREGGFLEY 646
Query: 462 PSYVMRTH-GSRKQQEALKSVTGNC-MKKVFEALDTLGSTKWRVNKQVLSVLESIWVSGG 519
PS VMR G Q +++ + VF L LG T W++N+ VL V+ W SG
Sbjct: 647 PSAVMRVKAGDISQLSYVETAAARGDLDTVFAGLTVLGKTGWKINRGVLEVMLEAWNSGE 706
Query: 520 NIAGLVDRN-DVLIPEKPLSEDMTEVQKWKWSVRKAKKINQERHSQRCDTELKLSVARRM 578
IA L N +++ PEKP ++D ++ + + A HSQRC +L +AR
Sbjct: 707 EIANLAPENPNIIEPEKPETDDRDILKDYYRAKIHAANTRTGYHSQRCFQNFQLEIARAY 766
Query: 579 KDEEGFYYPHNLDFRGRAYPMHPHLNHLSSDVCRGVLEFAEGRPLGKSGLRWLKIHLANL 638
++E FY PHNLDFRGRAYPM P+ N + +D CRG+L F++GR LG SGLRWLKIHLAN+
Sbjct: 767 RNET-FYLPHNLDFRGRAYPMPPYFNQMGADHCRGLLLFSKGRELGTSGLRWLKIHLANV 825
Query: 639 FSGGVEKLSHDGRLAFVENHLYEIFDSAENPINGSRWWLTAEDPFQCLAACINLSEALKS 698
F G +K S R F +HL +I DSA N + G +WWL A DPFQCLAACI L+ A+
Sbjct: 826 F--GYDKASFQEREQFAMDHLEDIRDSAINGLKGKKWWLDAGDPFQCLAACIELTNAMAL 883
Query: 699 SSPHSVISHLPIHQDGSCNGLQHYAALGRNTLEAAAVNLVAGEKPADVYSEIAVRVHEIM 758
P +SHLP+HQDGSCNGLQHYAALG + + A VNL ++P+D+Y+ +A V + +
Sbjct: 884 EDPTKFVSHLPVHQDGSCNGLQHYAALGGDIIGAQQVNLEPSDRPSDIYTGVAEHVKQSI 943
Query: 759 KRD-SNKDPSKHPQALLAKILIDQVDRKLVKQTVMTSVYGVTFVGAREQIKRRLEEKGHI 817
++D +N D + AK+L D++ RK+VKQTVMT+VYGVTF+GA Q++++L + H
Sbjct: 944 QKDAANGDQT-------AKLLEDKITRKIVKQTVMTNVYGVTFLGAIRQVRKQLVD--HY 994
Query: 818 TDDRQLFAA------ACYAAKVTLTALGEIFEAARSIMGWLGDCAKVIASENQP------ 865
D LF + A Y A+ ALG +F A I WLGDCA I+ P
Sbjct: 995 PD---LFHSGVAGECATYIARKIFVALGSMFTGAHDIQFWLGDCANRISQSLSPEQIEAL 1051
Query: 866 --------------------------------VRWTTPLGLPVVQPYCKNERHLIRTSLQ 893
V WTTPL LPV QPY + + LQ
Sbjct: 1052 ADEQNLKVVGRFQGAKKMAKNIKDPKYHFKSTVVWTTPLKLPVAQPYRDAASIKVYSDLQ 1111
Query: 894 VLALQ--REGNLVKIRKQRTAFPPNFVHSLDGSHMMMTAVACRDAGLHFAGL 943
L+++ + ++V RKQ AFPPNFVHSLD +HM ++AV C + GL F+ +
Sbjct: 1112 QLSIRNPQASDIVNKRKQLQAFPPNFVHSLDATHMFLSAVKCDELGLSFSAV 1163
>gi|345571061|gb|EGX53876.1| hypothetical protein AOL_s00004g535 [Arthrobotrys oligospora ATCC
24927]
Length = 1466
Score = 454 bits (1167), Expect = e-124, Method: Compositional matrix adjust.
Identities = 277/761 (36%), Positives = 410/761 (53%), Gaps = 86/761 (11%)
Query: 243 QKAAYAPHIELLPADKVAVIVMHKMMGLVMAGHEDRCVQVVQAAVHIGMAIEQEIRIHSF 302
++ Y P++ LL +K+A I + ++ L + ++ + + +G +E E I
Sbjct: 486 ERCQYGPYLRLLSPEKLAGITITSIIKLASGWQDSTAMKASASIISVGRNVEHEY-ISEQ 544
Query: 303 LEKT--------KNYKRKKIIADTEEVLSKEKELLRKRVNSLIKSKRVMEAQKLLKNEET 354
L+K + YK+K + EV EK+L +++ + LL NE
Sbjct: 545 LQKAFETKAGEPEYYKKKALQKQLAEV-KNEKDLAMLIYRQNRRAEMEKDGTGLLLNER- 602
Query: 355 KPWGRDTQAKLGSRLVELLIETAYVQ-HPVNP-----ADYSPPDVRPAFRHRFKTILKHP 408
W + +AK+GS LV LL + A ++ P N D +PA H ++ +
Sbjct: 603 --WSQPVRAKVGSVLVSLLFQVAKIKVRPTNKKVLKHMDKDLAIDQPALVHGYQFV---- 656
Query: 409 GQKTTKRYGVVE-----CDPLVLEGLDRSAKHMLIPYVPMLVPPKKWKGYNKGGYLFLPS 463
K+ GV+ L+ E L + L +PM+ P+ W +N G Y F P+
Sbjct: 657 ---GGKKIGVIRLHDEFSKKLMTEPLKGTT---LAKQLPMIAKPRPWCAWNDGAYYFTPT 710
Query: 464 YVMRTHGSRKQQEALKSVT--GNCMKKVFEALDTLGSTKWRVNKQVLSVLESIWVSGGNI 521
++R S +Q +K + GN + ++F LD LGST W +N++V V+ +W +G
Sbjct: 711 RMVRVKDSLEQTMYVKEASKHGN-LDRLFTGLDVLGSTAWTINQKVFDVILQVWNTGDKF 769
Query: 522 AGL--VDRNDVLIPEKPL-SEDMTEVQKWKWSVRKAKKINQERHSQRCDTELKLSVARRM 578
A + DV +PE P + D +K + ++ I + HSQRCD KL +AR
Sbjct: 770 ADIPPTFEKDVNMPEMPQPNADAAAKAAFKIAYQEMALIRKNHHSQRCDVNFKLEIARAF 829
Query: 579 KDEEGFYYPHNLDFRGRAYPMHPHLNHLSSDVCRGVLEFAEGRPLGKSGLRWLKIHLANL 638
+E FY+PHN+DFRGRAY M PHLNHL +D+CRG+L+F+E +PLG+SGLRWLKIHL+NL
Sbjct: 830 YNEV-FYFPHNVDFRGRAYAMPPHLNHLGNDLCRGLLKFSEKKPLGESGLRWLKIHLSNL 888
Query: 639 FSGGVEKLSHDGRLAFVENHLYEIFDSAENPINGSRWWLTAEDPFQCLAACINLSEALKS 698
GG +K S R + E+ + ++FDSA +P+ G RWWL +EDP+Q LA C+ L A+ S
Sbjct: 889 --GGYDKASLMAREEWAESRMEDVFDSARDPLGGKRWWLESEDPWQMLATCMELEAAMSS 946
Query: 699 SSPHSVISHLPIHQDGSCNGLQHYAALGRNTLEAAAVNLVAGEKPADVYSEIAVRVHEIM 758
P S++P+HQDG+CNGLQHYAALG + + A VNL +KP DVY+ +A V++ +
Sbjct: 947 KDPLKYESNMPVHQDGTCNGLQHYAALGGDIVGAKQVNLEPADKPQDVYTGVADLVNQAV 1006
Query: 759 KRDSNKDPSKHPQALLAKILIDQVDRKLVKQTVMTSVYGVTFVGAREQIKRRLEEKGHIT 818
D+ LAK L+ ++RK+VKQTVMT+VYGVTF+GA+ Q+K RL EKG
Sbjct: 1007 AEDAQNGNE------LAKDLLGHINRKVVKQTVMTNVYGVTFIGAKNQVKSRLMEKGVWP 1060
Query: 819 DDRQLFAAACYAAKVTLTALGEIFEAARSIMGWLGDCAKVIASENQP------------- 865
DR + + Y K T+L +F A I W G+CAK I+ P
Sbjct: 1061 RDR-VDKLSIYLTKKIFTSLQSMFTGAHLIQKWFGECAKRISRSVSPTQYASFAEHYTGV 1119
Query: 866 ---------------------VRWTTPLGLPVVQPYCKNERHLIRTSLQVLALQREG--N 902
V WTTPLGLPVVQPY + ++T+LQ + + N
Sbjct: 1120 IPTTGRQAHTKERGKAEFMTSVVWTTPLGLPVVQPYRHDATVAVKTNLQQITIVDTSIIN 1179
Query: 903 LVKIRKQRTAFPPNFVHSLDGSHMMMTAVACRDAGLHFAGL 943
V R+Q AFPPN++HSLD +HM+++A+A + AGL FA +
Sbjct: 1180 QVNSRRQMGAFPPNYIHSLDATHMLLSAMASKQAGLTFAAV 1220
>gi|119191788|ref|XP_001246500.1| hypothetical protein CIMG_00271 [Coccidioides immitis RS]
Length = 1363
Score = 453 bits (1166), Expect = e-124, Method: Compositional matrix adjust.
Identities = 291/837 (34%), Positives = 429/837 (51%), Gaps = 106/837 (12%)
Query: 178 LRRRQVKQETEAWERMVDEYKELEAKMIEKRLAPNL-PHIKGLFLGWFGPLSEAIERE-- 234
+R RQ++ E ++ ++ +++ A+ + P + G+ W L +IE E
Sbjct: 341 IRERQLRLEQDSVIAAMERWRKESAQRNSRPSNPTGGDKLGGVLWDWHQSLLTSIEGEIQ 400
Query: 235 --QKMQRTKKQ------KAAYAPHIELLPADKVAVIVMHKMMGLVMAGHEDRCVQVVQAA 286
K Q K++ + YAP + + D++A I + M + ++ +++ +
Sbjct: 401 SILKAQEKKRKTSEDNDRCEYAPFMNSIGPDRLAAITILATMNALGKTGMNKGIRLTRLI 460
Query: 287 VHIGMAIEQEIRIHSFLEKTKNYKRKKIIADTEEVLSKEKELLRKR----VNSLIKSKR- 341
+ +G A+++E Y +I +E SK L R V LI S R
Sbjct: 461 MLLGRAVQEE------------YVTDRI----QETPSKSAPLDSGRRAKLVQDLIPSNRG 504
Query: 342 ---VMEAQKLLKNEETKP--WGRDTQAKLGSRLVELLIETAYVQHPVNPADYSPPDV--- 393
V E+ NE +P W +AK+GS L +L + V V + ++
Sbjct: 505 RKGVRESLIEKYNEIHEPIKWSAAVEAKIGSLLASMLFSSTKVV--VKQQNTETGEITFV 562
Query: 394 -RPAFRHRFKTILKHPGQKTTKRYGVVECDPLVLEGLDRS-AKHMLIPYVPMLVPPKKWK 451
+PAFRH ++ H G V V++ R A +L ++PM+ PP+ W
Sbjct: 563 KQPAFRHVYQLEKGH-------SVGFVHIHDSVVDRFRREPASSLLAKHLPMVSPPQPWT 615
Query: 452 GYNKGGYLFLPSYVMRTHGSRKQ----QEALKSVTGNCMKKVFEALDTLGSTKWRVNKQV 507
Y GG+L P+ +MR + Q Q + + + ++F L+ LG T WR+NK V
Sbjct: 616 SYRYGGFLNQPTIIMRARSNDSQCLQRQYVRAAASRGDLDEIFAGLNVLGKTGWRINKPV 675
Query: 508 LSVLESIWVSGGNIAGL--VDRNDVLIPEKPLSEDMTEVQKWKWSVRKAKKINQERHSQR 565
V+ W SG +A + VD N + P KP ++D +++ + S HSQR
Sbjct: 676 FDVMLEAWNSGDELADIAPVDPN-LPEPTKPETDDPVQLRAYYRSKTLVDNKRSGLHSQR 734
Query: 566 CDTELKLSVARRMKDEEGFYYPHNLDFRGRAYPMHPHLNHLSSDVCRGVLEFAEGRPLGK 625
C L+L +AR E FY PHN+DFRGRAYP+ P+ N + D+CRG+L F++GR LG+
Sbjct: 735 CFQNLQLEIARAYVGET-FYLPHNMDFRGRAYPLPPYFNQMGPDMCRGLLLFSKGRELGE 793
Query: 626 SGLRWLKIHLANLFSGGVEKLSHDGRLAFVENHLYEIFDSAENPINGSRWWLTAEDPFQC 685
GLRWLKIH+AN++ G +K S D R F +HL ++ DSAE +NG RWWL A DPFQC
Sbjct: 794 RGLRWLKIHIANVY--GYDKASFDERAQFAMDHLDDVIDSAEKGLNGRRWWLEASDPFQC 851
Query: 686 LAACINLSEALKSSSPHSVISHLPIHQDGSCNGLQHYAALGRNTLEAAAVNLVAGEKPAD 745
LAACI L AL P ISHLPIHQDGSCNGLQHYAALG + + A VNL ++P+D
Sbjct: 852 LAACIELKNALACPDPTKYISHLPIHQDGSCNGLQHYAALGGDIIGARQVNLEPSDRPSD 911
Query: 746 VYSEIAVRVHEIMKRDSNKDPSKHPQALLAKILIDQVDRKLVKQTVMTSVYGVTFVGARE 805
+YS +A V + + +++ LAKIL D+V+RK+VKQTVMT+VYGVTF+GA
Sbjct: 912 IYSAVADHVRQSIAQEAAAGNQ------LAKILEDKVNRKIVKQTVMTNVYGVTFLGAIR 965
Query: 806 QIKRRLEEKGHITDDRQLFA-AACYAAKVTLTALGEIFEAARSIMGWLGDCAKVIASENQ 864
Q++++L +R + A Y + AL +F A I WLGDCA I
Sbjct: 966 QVQKQLNAFFPELSERNVVGKCATYITRKIFAALSSMFTGAHEIQFWLGDCANRITQSLG 1025
Query: 865 P------------------------------------VRWTTPLGLPVVQPYCKNERHLI 888
P V WTTPL LPVVQPY + + +
Sbjct: 1026 PEQIEALEAARHVPISGTSKAKKKAIIDDLSKRFLSTVIWTTPLKLPVVQPYREAKTRRV 1085
Query: 889 RTSLQVLALQ--REGNLVKIRKQRTAFPPNFVHSLDGSHMMMTAVACRDAGLHFAGL 943
T+LQ L+++ ++V RKQ AFPPNF+HSLD +HMM++A+ C + GL F+ +
Sbjct: 1086 VTTLQTLSIKDPHSSDVVNRRKQLQAFPPNFIHSLDATHMMLSAIKCDELGLSFSAV 1142
>gi|393219634|gb|EJD05121.1| DNA/RNA polymerase [Fomitiporia mediterranea MF3/22]
Length = 1397
Score = 453 bits (1166), Expect = e-124, Method: Compositional matrix adjust.
Identities = 284/795 (35%), Positives = 419/795 (52%), Gaps = 121/795 (15%)
Query: 244 KAAYAPHIELLPADKVAVIVMHKMMGLVMAGHEDRCVQVVQAAVHIGMAIEQEIR----- 298
K P + LL K+++I + ++M L G ++ +A + +G AIE E +
Sbjct: 440 KMRMGPFLSLLKPSKLSLITILELMRLQGTGGVTEGMKTARALLTVGKAIEMEYKAQILK 499
Query: 299 -------IHSFLEKTKNYKRKKIIADTEEVLSKEKELLRKRVN-SLIKSKRVMEAQKLLK 350
+ S T R+N S ++R E + +
Sbjct: 500 KNNVHVPVMSSFSLTAAGGAGAGGGGGGAGGGGIGGGGVGRINDSGFFTRRAYEELREWR 559
Query: 351 N------EETKPWGRD----TQAKLGSRLVELLIETAYV-QHPVNP-ADYSPPDVRPAFR 398
E+++ W D + ++ S LV+ L++ A V + VN + +PAF
Sbjct: 560 KAASKHFEDSQEWASDWTHAIRVRVASFLVDCLMDVATVTRTAVNRRTGEEIFEQQPAFF 619
Query: 399 HRFKTILKHPGQKTTKRYGVVECDPLVLEGLDRS-AKHMLIP-YVPMLVPPKKWKGYNKG 456
++ + H R GV+ +P+V E L + + L P ++PMLV PK W +++G
Sbjct: 620 QSYEYLRGH-------RLGVIRLNPVVAERLQKDDIRATLHPRHLPMLVKPKAWINHDEG 672
Query: 457 GYLFLPSYVMRTHGSRKQQEALK-SVTGNCMKKVFEALDTLGSTKWRVNKQVLSVLESIW 515
GY++ + VMR +++Q L+ + M+ VF +LD LGST W +N+++ V+ +W
Sbjct: 673 GYIYNKNSVMRLKDTQEQLTYLRHAAQAGHMEHVFASLDVLGSTPWVINREIFDVVLQVW 732
Query: 516 VSGGNIAGLVDRNDVLIPE--KPLSEDMTEVQK------WK-WSVRKAKKINQERHSQRC 566
SG + + N L PE +P + D + K WK W KA HS RC
Sbjct: 733 NSGDRFVKIPEAN-YLEPEPVRPENYDTDQAAKTRYLMAWKQWQTNKANS-----HSTRC 786
Query: 567 DTELKLSVARRMKDEEGFYYPHNLDFRGRAYPMHPHLNHLSSDVCRGVLEFAEGRPLGKS 626
K+ +AR + Y+PHN+DFRGRAYP+ PHLNH+ D+ RG+++FAE +PLG S
Sbjct: 787 SVNYKVEIARSFL-ADTMYFPHNIDFRGRAYPIPPHLNHIGDDLSRGLMKFAEKKPLGTS 845
Query: 627 GLRWLKIHLANLFSGGVEKLSHDGRLAFVENHLYEIFDSAENPINGSRWWLTAEDPFQCL 686
GLRWLKIHLANL G +K S + R+ FV +H+ +I DSAE P+ G++WW+ A+DP+QCL
Sbjct: 846 GLRWLKIHLANL--SGFDKGSFEERVQFVTDHMADIIDSAERPLEGNQWWVKADDPWQCL 903
Query: 687 AACINLSEALKSSSPHSVISHLPIHQDGSCNGLQHYAALGRNTLEAAAVNLVAGEKPADV 746
AAC L AL+SS P S+LP+HQDG+CNGLQHYAALG + + A VNL +KP+DV
Sbjct: 904 AACKELHHALESSDPEGYESNLPVHQDGTCNGLQHYAALGGDAMGARQVNLDITDKPSDV 963
Query: 747 YSEIAVRVHEIMKRD---SNKDPSKHPQALLAKILIDQVDRKLVKQTVMTSVYGVTFVGA 803
Y+ +A V +K+D NK A++L +V RK+VKQTVMT+VYGVTFVGA
Sbjct: 964 YTHVADMVELKIKQDIETGNK---------YAEMLQGKVSRKVVKQTVMTTVYGVTFVGA 1014
Query: 804 REQIKRRLEEKGHITDDRQLFAAACYAAKVTLTALGEIFEAARSIMGWLGDC----AKVI 859
REQI+R+L+++G I +++ A+ Y AK + ++G++F A++I WL C AK I
Sbjct: 1015 REQIERQLKDRGDIAA-HEVWGASAYLAKCVIASIGDLFSGAKAIQTWLTVCARLIAKSI 1073
Query: 860 ASEN-------------------------------------------------QPVRWTT 870
E V WTT
Sbjct: 1074 PKERIDAAIEENIRREMKAAEKAEKAWKDVDKTITRFKQARALPFSRLPKEQMTSVVWTT 1133
Query: 871 PLGLPVVQPYCKNERHLIRTSLQVLALQREG--NLVKIRKQRTAFPPNFVHSLDGSHMMM 928
PLGLP+VQPY K +R + TS+Q + + + V KQ +AFPPNF+HSLD +HMM+
Sbjct: 1134 PLGLPIVQPYRKTKRKQVMTSIQTVFISDPNAPSEVNTSKQASAFPPNFIHSLDATHMML 1193
Query: 929 TAVACRDAGLHFAGL 943
TA+ C AGL FA +
Sbjct: 1194 TALECNKAGLTFASV 1208
>gi|330812904|ref|XP_003291356.1| hypothetical protein DICPUDRAFT_95344 [Dictyostelium purpureum]
gi|325078456|gb|EGC32106.1| hypothetical protein DICPUDRAFT_95344 [Dictyostelium purpureum]
Length = 862
Score = 453 bits (1166), Expect = e-124, Method: Compositional matrix adjust.
Identities = 228/514 (44%), Positives = 329/514 (64%), Gaps = 26/514 (5%)
Query: 442 PMLVPPKKWKGYNKGGYLFLPSYVMRTHGSRKQQEALKSVTGNCMKKVFEALDTLGSTKW 501
PM++ P W +G YL ++R +G++ Q + S+ + + +++ AL+ LG+T W
Sbjct: 294 PMVIKPLPWISPFEGPYLHYKVPILRANGNKSQ---ITSLLKSDLSQIYRALNVLGNTPW 350
Query: 502 RVNKQVLSVLESIWVSGGNIAGLVDRNDVLIPEKPLSED----MTEVQKWKWSVRKAKKI 557
+NK+ ++ W +GG+IA + + + P PL ED ++ +K +K K+
Sbjct: 351 VINKKAYDIINEAWEAGGDIADMPRKINYEYP--PLPEDVLTSLSSRKKHFLLEKKISKL 408
Query: 558 NQERHSQRCDTELKLSVARRMKDEEGFYYPHNLDFRGRAYPMHPHLNHLSSDVCRGVLEF 617
N++ HS R D + KL VA + D Y+PHNLDFRGR+YP+ PHLNHL SD+CR +L+F
Sbjct: 409 NKDLHSLRSDCKYKLEVAEKFLDHT-IYFPHNLDFRGRSYPIPPHLNHLGSDLCRSLLKF 467
Query: 618 AEGRPLGKSGLRWLKIHLANLFSGGVEKLSHDGRLAFVENHLYEIFDSAENPINGSRWWL 677
+ +PLGK GL WLKI ++NL+ GV+K+SH R+ F ++ I DSA+NP+ G RWWL
Sbjct: 468 EKSKPLGKRGLDWLKIQISNLY--GVDKVSHADRIKFTTENIENIMDSADNPLKGKRWWL 525
Query: 678 TAEDPFQCLAACINLSEALKSSSPHSVISHLPIHQDGSCNGLQHYAALGRNTLEAAAVNL 737
A+ P+Q LAACI L+EAL+S +P S+LPIHQDG+CNGLQHYAALG + L A VNL
Sbjct: 526 NADYPWQALAACIELTEALRSPNPEEFCSNLPIHQDGTCNGLQHYAALGGDELGAIKVNL 585
Query: 738 VAGEKPADVYSEIAVRVHEIMKRDSNKDPSKHPQALLAKILIDQVDRKLVKQTVMTSVYG 797
+ +KP DVY+ +A V EI+++++ + A ++DRKLVKQTVMTSVYG
Sbjct: 586 IPSDKPQDVYTGVAGLVAEIVEKEAEEGNK------FAIFFRGRIDRKLVKQTVMTSVYG 639
Query: 798 VTFVGAREQIKRRLEEKGH------ITDDRQLFAAACYAAKVTLTALGEIFEAARSIMGW 851
VT++GAREQI L+EK DD +F+A+ Y K T AL +F ARSIM W
Sbjct: 640 VTYIGAREQIHSSLKEKLDEETNPLEIDDEFMFSASSYITKHTFRALNNMFFGARSIMAW 699
Query: 852 LGDCAKVIASENQPVRWTTPLGLPVVQPYCKNERHLIRTSLQVLALQREGNLVKIR--KQ 909
L +CA +IA PV W TPLGLPVVQPY K ++ ++ L + + +++ KQ
Sbjct: 700 LSECAVLIAKSGHPVNWITPLGLPVVQPYRKTSKNSVKILEGEFLLINDTDKLQVNTLKQ 759
Query: 910 RTAFPPNFVHSLDGSHMMMTAVACRDAGLHFAGL 943
++AFPPNF+HSLD +HM +TA+AC DAG+ ++ +
Sbjct: 760 KSAFPPNFIHSLDSTHMFLTALACDDAGITYSSV 793
>gi|392864271|gb|EAS34905.2| mitochondrial DNA-directed RNA polymerase [Coccidioides immitis RS]
Length = 1385
Score = 453 bits (1165), Expect = e-124, Method: Compositional matrix adjust.
Identities = 291/837 (34%), Positives = 429/837 (51%), Gaps = 106/837 (12%)
Query: 178 LRRRQVKQETEAWERMVDEYKELEAKMIEKRLAPNL-PHIKGLFLGWFGPLSEAIERE-- 234
+R RQ++ E ++ ++ +++ A+ + P + G+ W L +IE E
Sbjct: 363 IRERQLRLEQDSVIAAMERWRKESAQRNSRPSNPTGGDKLGGVLWDWHQSLLTSIEGEIQ 422
Query: 235 --QKMQRTKKQ------KAAYAPHIELLPADKVAVIVMHKMMGLVMAGHEDRCVQVVQAA 286
K Q K++ + YAP + + D++A I + M + ++ +++ +
Sbjct: 423 SILKAQEKKRKTSEDNDRCEYAPFMNSIGPDRLAAITILATMNALGKTGMNKGIRLTRLI 482
Query: 287 VHIGMAIEQEIRIHSFLEKTKNYKRKKIIADTEEVLSKEKELLRKR----VNSLIKSKR- 341
+ +G A+++E Y +I +E SK L R V LI S R
Sbjct: 483 MLLGRAVQEE------------YVTDRI----QETPSKSAPLDSGRRAKLVQDLIPSNRG 526
Query: 342 ---VMEAQKLLKNEETKP--WGRDTQAKLGSRLVELLIETAYVQHPVNPADYSPPDV--- 393
V E+ NE +P W +AK+GS L +L + V V + ++
Sbjct: 527 RKGVRESLIEKYNEIHEPIKWSAAVEAKIGSLLASMLFSSTKVV--VKQQNTETGEITFV 584
Query: 394 -RPAFRHRFKTILKHPGQKTTKRYGVVECDPLVLEGLDRS-AKHMLIPYVPMLVPPKKWK 451
+PAFRH ++ H G V V++ R A +L ++PM+ PP+ W
Sbjct: 585 KQPAFRHVYQLEKGH-------SVGFVHIHDSVVDRFRREPASSLLAKHLPMVSPPQPWT 637
Query: 452 GYNKGGYLFLPSYVMRTHGSRKQ----QEALKSVTGNCMKKVFEALDTLGSTKWRVNKQV 507
Y GG+L P+ +MR + Q Q + + + ++F L+ LG T WR+NK V
Sbjct: 638 SYRYGGFLNQPTIIMRARSNDSQCLQRQYVRAAASRGDLDEIFAGLNVLGKTGWRINKPV 697
Query: 508 LSVLESIWVSGGNIAGL--VDRNDVLIPEKPLSEDMTEVQKWKWSVRKAKKINQERHSQR 565
V+ W SG +A + VD N + P KP ++D +++ + S HSQR
Sbjct: 698 FDVMLEAWNSGDELADIAPVDPN-LPEPTKPETDDPVQLRAYYRSKTLVDNKRSGLHSQR 756
Query: 566 CDTELKLSVARRMKDEEGFYYPHNLDFRGRAYPMHPHLNHLSSDVCRGVLEFAEGRPLGK 625
C L+L +AR E FY PHN+DFRGRAYP+ P+ N + D+CRG+L F++GR LG+
Sbjct: 757 CFQNLQLEIARAYVGET-FYLPHNMDFRGRAYPLPPYFNQMGPDMCRGLLLFSKGRELGE 815
Query: 626 SGLRWLKIHLANLFSGGVEKLSHDGRLAFVENHLYEIFDSAENPINGSRWWLTAEDPFQC 685
GLRWLKIH+AN++ G +K S D R F +HL ++ DSAE +NG RWWL A DPFQC
Sbjct: 816 RGLRWLKIHIANVY--GYDKASFDERAQFAMDHLDDVIDSAEKGLNGRRWWLEASDPFQC 873
Query: 686 LAACINLSEALKSSSPHSVISHLPIHQDGSCNGLQHYAALGRNTLEAAAVNLVAGEKPAD 745
LAACI L AL P ISHLPIHQDGSCNGLQHYAALG + + A VNL ++P+D
Sbjct: 874 LAACIELKNALACPDPTKYISHLPIHQDGSCNGLQHYAALGGDIIGARQVNLEPSDRPSD 933
Query: 746 VYSEIAVRVHEIMKRDSNKDPSKHPQALLAKILIDQVDRKLVKQTVMTSVYGVTFVGARE 805
+YS +A V + + +++ LAKIL D+V+RK+VKQTVMT+VYGVTF+GA
Sbjct: 934 IYSAVADHVRQSIAQEAAAGNQ------LAKILEDKVNRKIVKQTVMTNVYGVTFLGAIR 987
Query: 806 QIKRRLEEKGHITDDRQLFA-AACYAAKVTLTALGEIFEAARSIMGWLGDCAKVIASENQ 864
Q++++L +R + A Y + AL +F A I WLGDCA I
Sbjct: 988 QVQKQLNAFFPELSERNVVGKCATYITRKIFAALSSMFTGAHEIQFWLGDCANRITQSLG 1047
Query: 865 P------------------------------------VRWTTPLGLPVVQPYCKNERHLI 888
P V WTTPL LPVVQPY + + +
Sbjct: 1048 PEQIEALEAARHVPISGTSKAKKKAIIDDLSKRFLSTVIWTTPLKLPVVQPYREAKTRRV 1107
Query: 889 RTSLQVLALQ--REGNLVKIRKQRTAFPPNFVHSLDGSHMMMTAVACRDAGLHFAGL 943
T+LQ L+++ ++V RKQ AFPPNF+HSLD +HMM++A+ C + GL F+ +
Sbjct: 1108 VTTLQTLSIKDPHSSDVVNRRKQLQAFPPNFIHSLDATHMMLSAIKCDELGLSFSAV 1164
>gi|164655881|ref|XP_001729069.1| hypothetical protein MGL_3857 [Malassezia globosa CBS 7966]
gi|159102958|gb|EDP41855.1| hypothetical protein MGL_3857 [Malassezia globosa CBS 7966]
Length = 1358
Score = 452 bits (1164), Expect = e-124, Method: Compositional matrix adjust.
Identities = 279/789 (35%), Positives = 429/789 (54%), Gaps = 90/789 (11%)
Query: 216 IKGLFLGWFGPLSEAIERE-QKMQRTKKQKAAYA------PHIELLPADKVAVIVMHKMM 268
++ W+ L A+ ++ +++ R + A + P + LLPA K+A+IV+ ++M
Sbjct: 443 LQAWMWDWYQKLEVALRKDIERLGRQTRHAVASSMDAQLYPFLCLLPASKMAMIVILEIM 502
Query: 269 GLVMAGHEDRCVQVVQAAVHIGMAIEQEIRIHSFLEKTKNYKRKKIIADTEEVLSKEKEL 328
+ ++ +A + +G AIE E + + + + + +++
Sbjct: 503 RMQGISGVADGIKTTRALITVGKAIETEYSAVMLNKHPEIFVQAR----------AAQQM 552
Query: 329 LRKRVNSLIKSKRVMEAQKLLKNEE-----TKPWGRDTQAKLGSRLVELLIETAYVQHPV 383
L KR + ++R ++A + EE W + +A++GS LV+ L++ A V
Sbjct: 553 LGKRSLIDLAARRDLKAWQERCREENIETNVPKWTQIIRARVGSFLVQHLLDVATVHRKA 612
Query: 384 NPADYSP-PDVRPAFRHRFKTILKHPGQKTTKRYGVVECDPLVLEGLDR-SAKHMLIP-Y 440
D + +PAF ++ I K+ GV+ + +V + LD+ S + L P +
Sbjct: 613 YDRDGELWEEDQPAFYSAYEYI-------QGKKLGVIRLNEVVSQRLDKESVRETLHPRH 665
Query: 441 VPMLVPPKKWKGYNKGGYLFLPSYVMRTHGSRKQQEALKSVTGN-CMKKVFEALDTLGST 499
+PMLVPP+ W ++ GGY + + MR S +Q L++ + N ++ V LD LG+T
Sbjct: 666 LPMLVPPRPWLSHDSGGYYSMKTSAMRYKDSVEQSSYLRAASENHGLEVVLAGLDVLGNT 725
Query: 500 KWRVNKQVLSVLESIWVSGGNIAGLVDRNDVLIPEKPLSEDMTEVQK-WKWSVRKAKKIN 558
W VNK+V V+ IW SG + L + D + + + +R+ I
Sbjct: 726 AWNVNKEVFDVVLQIWNSGEALGDLPPAEMTDPEPERPPPDDIKAKGIYLQRLRQWNTIR 785
Query: 559 QERHSQRCDTELKLSVARRMKDEEGFYYPHNLDFRGRAYPMHPHLNHLSSDVCRGVLEFA 618
HSQRCD KL +AR +E FY+PHN+DFRGRAYP+ PHLNH+ +D+CRG+L+FA
Sbjct: 786 SSNHSQRCDINYKLEIARSFLNER-FYFPHNMDFRGRAYPIPPHLNHIGNDLCRGLLKFA 844
Query: 619 EGRPLGKSGLRWLKIHLANLFSGGVEKLSHDGRLAFVENHLYEIFDSAENPINGSRWWLT 678
E +PLG+ GLRWL+IHLAN++ G +K S R F +H +I DSA N +G RWWL
Sbjct: 845 EAKPLGEKGLRWLRIHLANVW--GYDKASFAEREQFTIDHEADIRDSATNAYHGKRWWLQ 902
Query: 679 AEDPFQCLAACINLSEALK-SSSPHSVISHLPIHQDGSCNGLQHYAALGRNTLEAAAVNL 737
A+DP+QCLA CI L++A P + S LP+HQDG+CNGLQHYAALG + A VNL
Sbjct: 903 ADDPWQCLATCIELTKAWDYPDGPEAFPSQLPVHQDGTCNGLQHYAALGGDLQGAKQVNL 962
Query: 738 VAGEKPADVYSEIA-VRVHEIMKRDSNKDPSKHPQALLAKILIDQVDRKLVKQTVMTSVY 796
G++PADVY+ +A + + ++ +R DP+ A++L +V RK+VKQTVMT+VY
Sbjct: 963 RGGDRPADVYTGVAELVIEQLNRRAEEGDPT-------AQLLRGKVTRKVVKQTVMTTVY 1015
Query: 797 GVTFVGAREQIKRRLEEKGHITDDRQLFAAACYAAKVTLTALGEIFEAARSIMGWLGDCA 856
GVTF+GA+ Q+ R+L ++G T +++ AA Y AKV + +G++F A I WL A
Sbjct: 1016 GVTFIGAKNQVMRQLVDRGD-TPAEEVWTAASYLAKVIMDCIGDLFSGANMIQDWLTITA 1074
Query: 857 KVIASENQPVR---------------------------------------WTTPLGLPVV 877
++IA P R WT+ LGLPVV
Sbjct: 1075 RMIAKSIPPERVPYAQMKVTRKGSKADPEAHTKRPSVTSREGREQMTSVIWTSALGLPVV 1134
Query: 878 QPYCKNERHLIRTSLQVLALQREGNL---VKIRKQRTAFPPNFVHSLDGSHMMMTAVACR 934
QPY + ++H I T++Q + + R+ N V KQ +AFPPNF+HSLD +HM +TA+ C
Sbjct: 1135 QPYRRIKKHQITTAVQSVYI-RDPNQNFEVNTSKQASAFPPNFIHSLDATHMFLTALECH 1193
Query: 935 DAGLHFAGL 943
AGL FA +
Sbjct: 1194 SAGLVFASV 1202
>gi|303313347|ref|XP_003066685.1| DNA-dependent RNA polymerase family protein [Coccidioides posadasii
C735 delta SOWgp]
gi|240106347|gb|EER24540.1| DNA-dependent RNA polymerase family protein [Coccidioides posadasii
C735 delta SOWgp]
Length = 1385
Score = 452 bits (1164), Expect = e-124, Method: Compositional matrix adjust.
Identities = 291/837 (34%), Positives = 429/837 (51%), Gaps = 106/837 (12%)
Query: 178 LRRRQVKQETEAWERMVDEYKELEAKMIEKRLAPNL-PHIKGLFLGWFGPLSEAIERE-- 234
+R RQ++ E ++ ++ +++ A+ + P + G+ W L +IE E
Sbjct: 363 IRERQLRLEQDSVIAAMERWRKESAQRNSRPSNPTGGDKLGGVLWDWHQSLLTSIEGEIQ 422
Query: 235 --QKMQRTKKQ------KAAYAPHIELLPADKVAVIVMHKMMGLVMAGHEDRCVQVVQAA 286
K Q K++ + YAP + + D++A I + M + ++ +++ +
Sbjct: 423 SILKAQEKKRKTSEDNDRCEYAPFMNSIGPDRLAAITILATMNALGKTGMNKGIRLTRLI 482
Query: 287 VHIGMAIEQEIRIHSFLEKTKNYKRKKIIADTEEVLSKEKELLRKR----VNSLIKSKR- 341
+ +G A+++E Y +I +E SK L R V LI S R
Sbjct: 483 MLLGRAVQEE------------YVTDRI----QETPSKSAPLDSGRRAKLVQDLIPSNRG 526
Query: 342 ---VMEAQKLLKNEETKP--WGRDTQAKLGSRLVELLIETAYVQHPVNPADYSPPDV--- 393
V E+ NE +P W +AK+GS L +L + V V + ++
Sbjct: 527 RKGVRESLIEKYNEIHEPIKWSAAVEAKIGSLLASMLFSSTKVV--VKQQNTETGEITFV 584
Query: 394 -RPAFRHRFKTILKHPGQKTTKRYGVVECDPLVLEGLDRS-AKHMLIPYVPMLVPPKKWK 451
+PAFRH ++ H G V V++ R A +L ++PM+ PP+ W
Sbjct: 585 KQPAFRHVYQLEKGH-------SVGFVHIHDSVVDRFRREPASSLLAKHLPMVSPPQPWT 637
Query: 452 GYNKGGYLFLPSYVMRTHGSRKQ----QEALKSVTGNCMKKVFEALDTLGSTKWRVNKQV 507
Y GG+L P+ +MR + Q Q + + + ++F L+ LG T WR+NK V
Sbjct: 638 SYRYGGFLNQPTIIMRARSNDSQCLQRQYVRAAASRGDLDEIFAGLNVLGKTGWRINKPV 697
Query: 508 LSVLESIWVSGGNIAGL--VDRNDVLIPEKPLSEDMTEVQKWKWSVRKAKKINQERHSQR 565
V+ W SG +A + VD N + P KP ++D +++ + S HSQR
Sbjct: 698 FDVMLEAWNSGDELADIAPVDPN-LPEPTKPETDDPVQLRAYYRSKTLVDNKRSGLHSQR 756
Query: 566 CDTELKLSVARRMKDEEGFYYPHNLDFRGRAYPMHPHLNHLSSDVCRGVLEFAEGRPLGK 625
C L+L +AR E FY PHN+DFRGRAYP+ P+ N + D+CRG+L F++GR LG+
Sbjct: 757 CFQNLQLEIARAYVGET-FYLPHNMDFRGRAYPLPPYFNQMGPDMCRGLLLFSKGRELGE 815
Query: 626 SGLRWLKIHLANLFSGGVEKLSHDGRLAFVENHLYEIFDSAENPINGSRWWLTAEDPFQC 685
GLRWLKIH+AN++ G +K S D R F +HL ++ DSAE +NG RWWL A DPFQC
Sbjct: 816 RGLRWLKIHIANVY--GYDKASFDERAQFAMDHLDDVIDSAEKGLNGRRWWLEASDPFQC 873
Query: 686 LAACINLSEALKSSSPHSVISHLPIHQDGSCNGLQHYAALGRNTLEAAAVNLVAGEKPAD 745
LAACI L AL P ISHLPIHQDGSCNGLQHYAALG + + A VNL ++P+D
Sbjct: 874 LAACIELKNALACPDPTKYISHLPIHQDGSCNGLQHYAALGGDIIGARQVNLEPSDRPSD 933
Query: 746 VYSEIAVRVHEIMKRDSNKDPSKHPQALLAKILIDQVDRKLVKQTVMTSVYGVTFVGARE 805
+YS +A V + + +++ LAKIL D+V+RK+VKQTVMT+VYGVTF+GA
Sbjct: 934 IYSAVADHVRQSIAQEAAAGNQ------LAKILEDKVNRKIVKQTVMTNVYGVTFLGAIR 987
Query: 806 QIKRRLEEKGHITDDRQLFA-AACYAAKVTLTALGEIFEAARSIMGWLGDCAKVIASENQ 864
Q++++L +R + A Y + AL +F A I WLGDCA I
Sbjct: 988 QVQKQLNAFFPELSERNVVGKCATYITRKIFAALSSMFTGAHEIQFWLGDCANRITQSLG 1047
Query: 865 P------------------------------------VRWTTPLGLPVVQPYCKNERHLI 888
P V WTTPL LPVVQPY + + +
Sbjct: 1048 PEQIEALEAARQVPISGTSKAKKKAIIDDLSKRFLSTVIWTTPLKLPVVQPYREAKTRRV 1107
Query: 889 RTSLQVLALQ--REGNLVKIRKQRTAFPPNFVHSLDGSHMMMTAVACRDAGLHFAGL 943
T+LQ L+++ ++V RKQ AFPPNF+HSLD +HMM++A+ C + GL F+ +
Sbjct: 1108 VTTLQTLSIKDPHSSDVVNRRKQLQAFPPNFIHSLDATHMMLSAIKCDELGLSFSAV 1164
>gi|320036385|gb|EFW18324.1| DNA-directed RNA polymerase [Coccidioides posadasii str. Silveira]
Length = 1385
Score = 452 bits (1163), Expect = e-124, Method: Compositional matrix adjust.
Identities = 291/837 (34%), Positives = 429/837 (51%), Gaps = 106/837 (12%)
Query: 178 LRRRQVKQETEAWERMVDEYKELEAKMIEKRLAPNL-PHIKGLFLGWFGPLSEAIERE-- 234
+R RQ++ E ++ ++ +++ A+ + P + G+ W L +IE E
Sbjct: 363 IRERQLRLEQDSVIAAMERWRKESAQRNSRPSNPTGGDKLGGVLWDWHQSLLTSIEGEIQ 422
Query: 235 --QKMQRTKKQ------KAAYAPHIELLPADKVAVIVMHKMMGLVMAGHEDRCVQVVQAA 286
K Q K++ + YAP + + D++A I + M + ++ +++ +
Sbjct: 423 SILKAQEKKRKTSEDNDRCEYAPFMNSIGPDRLAAITILATMNALGKTGMNKGIRLTRLI 482
Query: 287 VHIGMAIEQEIRIHSFLEKTKNYKRKKIIADTEEVLSKEKELLRKR----VNSLIKSKR- 341
+ +G A+++E Y +I +E SK L R V LI S R
Sbjct: 483 MLLGRAVQEE------------YVTDRI----QETPSKSAPLDSGRRAKLVQDLIPSNRG 526
Query: 342 ---VMEAQKLLKNEETKP--WGRDTQAKLGSRLVELLIETAYVQHPVNPADYSPPDV--- 393
V E+ NE +P W +AK+GS L +L + V V + ++
Sbjct: 527 RKGVRESLIEKYNEIHEPIKWSAAVEAKIGSLLASMLFSSTKVV--VKQQNTETGEITFV 584
Query: 394 -RPAFRHRFKTILKHPGQKTTKRYGVVECDPLVLEGLDRS-AKHMLIPYVPMLVPPKKWK 451
+PAFRH ++ H G V V++ R A +L ++PM+ PP+ W
Sbjct: 585 KQPAFRHVYQLEKGH-------SVGFVHIHDSVVDRFRREPASSLLAKHLPMVSPPQPWT 637
Query: 452 GYNKGGYLFLPSYVMRTHGSRKQ----QEALKSVTGNCMKKVFEALDTLGSTKWRVNKQV 507
Y GG+L P+ +MR + Q Q + + + ++F L+ LG T WR+NK V
Sbjct: 638 SYRYGGFLNQPTIIMRARSNDSQCLQRQYVRAAASRGDLDEIFAGLNVLGKTGWRINKPV 697
Query: 508 LSVLESIWVSGGNIAGL--VDRNDVLIPEKPLSEDMTEVQKWKWSVRKAKKINQERHSQR 565
V+ W SG +A + VD N + P KP ++D +++ + S HSQR
Sbjct: 698 FDVMLEAWNSGDELADIAPVDPN-LPEPTKPETDDPVQLRAYYRSKTLVDNKRSGLHSQR 756
Query: 566 CDTELKLSVARRMKDEEGFYYPHNLDFRGRAYPMHPHLNHLSSDVCRGVLEFAEGRPLGK 625
C L+L +AR E FY PHN+DFRGRAYP+ P+ N + D+CRG+L F++GR LG+
Sbjct: 757 CFQNLQLEIARAYVGET-FYLPHNMDFRGRAYPLPPYFNQMGPDMCRGLLLFSKGRELGE 815
Query: 626 SGLRWLKIHLANLFSGGVEKLSHDGRLAFVENHLYEIFDSAENPINGSRWWLTAEDPFQC 685
GLRWLKIH+AN++ G +K S D R F +HL ++ DSAE +NG RWWL A DPFQC
Sbjct: 816 RGLRWLKIHIANVY--GYDKASFDERAQFAMDHLDDVIDSAEKGLNGRRWWLEASDPFQC 873
Query: 686 LAACINLSEALKSSSPHSVISHLPIHQDGSCNGLQHYAALGRNTLEAAAVNLVAGEKPAD 745
LAACI L AL P ISHLPIHQDGSCNGLQHYAALG + + A VNL ++P+D
Sbjct: 874 LAACIELKNALACPDPTKYISHLPIHQDGSCNGLQHYAALGGDIIGARQVNLEPSDRPSD 933
Query: 746 VYSEIAVRVHEIMKRDSNKDPSKHPQALLAKILIDQVDRKLVKQTVMTSVYGVTFVGARE 805
+YS +A V + + +++ LAKIL D+V+RK+VKQTVMT+VYGVTF+GA
Sbjct: 934 IYSAVADHVRQSIAQEAAAGNQ------LAKILEDKVNRKIVKQTVMTNVYGVTFLGAIR 987
Query: 806 QIKRRLEEKGHITDDRQLFA-AACYAAKVTLTALGEIFEAARSIMGWLGDCAKVIASENQ 864
Q++++L +R + A Y + AL +F A I WLGDCA I
Sbjct: 988 QVQKQLNAFFPELSERNVVGKCATYITRKIFAALSSMFTGAHEIQFWLGDCANRITQSLG 1047
Query: 865 P------------------------------------VRWTTPLGLPVVQPYCKNERHLI 888
P V WTTPL LPVVQPY + + +
Sbjct: 1048 PEQIEALEAARQVPISGTSKAKKKAIIDDLSKRFLSTVIWTTPLKLPVVQPYREAKTRRV 1107
Query: 889 RTSLQVLALQ--REGNLVKIRKQRTAFPPNFVHSLDGSHMMMTAVACRDAGLHFAGL 943
T+LQ L+++ ++V RKQ AFPPNF+HSLD +HMM++A+ C + GL F+ +
Sbjct: 1108 VTTLQTLSIKDPHSSDVVNRRKQLQAFPPNFIHSLDATHMMLSAIKCDELGLSFSAV 1164
>gi|50306641|ref|XP_453294.1| hypothetical protein [Kluyveromyces lactis NRRL Y-1140]
gi|49642428|emb|CAH00390.1| KLLA0D05247p [Kluyveromyces lactis]
Length = 1263
Score = 452 bits (1163), Expect = e-124, Method: Compositional matrix adjust.
Identities = 274/752 (36%), Positives = 422/752 (56%), Gaps = 78/752 (10%)
Query: 229 EAIEREQKM-QRTKKQKAAYAPHIELLPADKVAVIVMHKMMGLVMAGHEDRCVQVVQAAV 287
+ +E+EQK + + Y P++ L+ +K+ VI + +++ L +G ++ +A +
Sbjct: 391 DLLEKEQKAPNKQNSDRLKYGPYLLLVEPEKMCVITILELLKLQSSGGVTEGMRTARAVL 450
Query: 288 HIGMAIEQEIRIHSFLEKTKNYKRKKIIADTEEVLSKEKELLRKRVNSLIKSKR--VMEA 345
+G +IE E R +E++L E ++ K VN + V A
Sbjct: 451 SVGRSIEMEFR-------------------SEKLLRSENKMF-KEVNKRSHEFKMFVQNA 490
Query: 346 QKLLKN----EETKPWGRDTQAKLGSRLVELLIETAYVQ-HPVNPADYSPP-DVRPAFRH 399
+ L+N E W D +AK+GS L+ +LI + V V+P PAF H
Sbjct: 491 KTALRNMHVEENMIQWPSDVKAKIGSILISMLIHVSKVTVEGVDPITKEKVVGEAPAFCH 550
Query: 400 RFKTILKHPGQKTTKRYGVVECDPLVLEGL--DRSAKHMLIPYVPMLVPPKKWKGYNKGG 457
F+ ++ + G+++ ++ L +R ++ ++PMLV P+ W +N GG
Sbjct: 551 TFQ-------YRSGTKIGILKIHRSLVNQLSAERMTTNIQPQHLPMLVRPRPWTNWNSGG 603
Query: 458 YLFLPSYVMRTHGSRKQQEALKSVT-GNCMKKVFEALDTLGSTKWRVNKQVLSVLESIWV 516
Y + S ++R+ S +Q +K+V+ + V+E L+ LG+T W +N+++ +++ +W
Sbjct: 604 YNYSQSTLIRSRDSPEQIAYIKAVSEQGSIDNVYEGLNVLGNTPWTINEKLFNIVSEVWN 663
Query: 517 SGGNIAGLVDRNDVL----IPEKPL-SEDMTEVQKWKWSVRKAKKINQERHSQRCDTELK 571
+G G +D VL P +P SED +++W+ R+ + S RCD+ K
Sbjct: 664 TG---EGFLDIPPVLDNFEFPPQPARSEDPLILKEWRNKCRQMSNEFKGFKSYRCDSNYK 720
Query: 572 LSVARRMKDEEGFYYPHNLDFRGRAYPMHPHLNHLSSDVCRGVLEFAEGRPLGKSGLRWL 631
L +AR E+ FY+PHN+DFRGRAYP+ PH NHL +D+ R +L F G+ LG SGL+WL
Sbjct: 721 LEIARAFLGEK-FYFPHNMDFRGRAYPLAPHFNHLGNDMTRSLLIFWNGKKLGTSGLQWL 779
Query: 632 KIHLANLFSGGVEKLSHDGRLAFVENHLYEIFDSAENPINGSRWWLTAEDPFQCLAACIN 691
KIHLANL+ G++K S + R+ F + HL EI +SAE+P++G+RWW A+ P+Q LA CI
Sbjct: 780 KIHLANLY--GMDKCSFEERVEFADTHLKEIRESAEHPLDGTRWWTKADKPWQFLATCIE 837
Query: 692 LSEALKSSSPHSVISHLPIHQDGSCNGLQHYAALGRNTLEAAAVNLVAGEKPADVYSEIA 751
L+EALK +P + ISH P+HQDG+CNGLQHYAALG + A VNLV ++P DVY+ +A
Sbjct: 838 LNEALKLDNPENFISHQPVHQDGTCNGLQHYAALGGDIEGARQVNLVPSDRPQDVYAFVA 897
Query: 752 VRVHEIMKRDSNKDPSKHPQALLAKILIDQVDRKLVKQTVMTSVYGVTFVGAREQIKRRL 811
V KR N + Q A IL D + RK+VK+TVMT+VYGVTFVGA +QI + L
Sbjct: 898 KLV---TKRLENSAAAGDEQ---AAILKDLISRKVVKRTVMTNVYGVTFVGAADQIMKEL 951
Query: 812 EEKGHITDDRQLFAAACYAAKVTLTALGEIFEAARSIMGWLGDCAKVIASE-------NQ 864
++ + + + Y AK ++ E+F AA I WLG+CAK I+ NQ
Sbjct: 952 DQ--YFDKPEESNELSRYLAKHVFASIRELFHAAHLIQDWLGECAKKISKSVRLDFDLNQ 1009
Query: 865 -----------PVRWTTPLGLPVVQPYCKNERHLIRTSLQVLALQREG--NLVKIRKQRT 911
V WT+PLGLPVVQPY ++ ++T+LQ + + N + R+Q+
Sbjct: 1010 SKTINSSDLMTSVIWTSPLGLPVVQPYRDLKKKQVQTNLQTVFITDPFAINPINPRRQQA 1069
Query: 912 AFPPNFVHSLDGSHMMMTAVACRDAGLHFAGL 943
PPNF+HSLD SHM+++A+ C AGL FA +
Sbjct: 1070 GLPPNFIHSLDASHMLLSAIQCGKAGLDFAAV 1101
>gi|378726279|gb|EHY52738.1| DNA-directed RNA polymerase [Exophiala dermatitidis NIH/UT8656]
Length = 1425
Score = 452 bits (1162), Expect = e-124, Method: Compositional matrix adjust.
Identities = 294/833 (35%), Positives = 426/833 (51%), Gaps = 95/833 (11%)
Query: 181 RQVKQETEAWERMVDEYKELEAKMIEKRLAPNLPH--IKGLFLGWFGPLSEAIEREQKMQ 238
RQ K E +A + + +K K + +L H I L W L+E I E K+
Sbjct: 353 RQRKLERDAIQSALQRWKTEYQKRARSGITGDLAHGKIGALLWQWHEILAEKITNEIKLA 412
Query: 239 R-----------TKKQKAAYAPHIELLPADKVAVIVMHKMMGLVMAGHEDRCVQVVQAAV 287
R +K +A +P +ELLPA+++A + +M ++ + ++V+
Sbjct: 413 REEDATPGKKTAQQKLRAECSPFLELLPAERLAAVTSVALMQIMSKVGASKQAKLVRLVT 472
Query: 288 HIGMAIEQEIRIHSFLEK-TKNYKRKKIIADTEEVLS-KEKELLRKRVNSLIKSKRVMEA 345
+G AIE E +K K K+ +A+T K E L N+L + A
Sbjct: 473 ELGQAIETEYDATQVAQKRNAMLKAKEKLAETAPGAPLKWDETLD---NTLHRRSSHHAA 529
Query: 346 QKLLKNEETKPWGRDTQAKLGSRLVELLIETAYVQHPVNPADYSPPD----VRPAFRHRF 401
K W + AKLGS L EL+ +TA + + D + +P F H
Sbjct: 530 TPYAYK---KNWSKTIHAKLGSVLCELMFDTAKIM--ITREDKTTGKKVSIAQPVFIH-- 582
Query: 402 KTILKHPGQKTTKRYGVVEC-DPLVLEGLDRSAKHMLIPYVPMLVPPKKWKGYNKGGYLF 460
+ +R G V + V + A+H++ +PM+ PP+ WKG+ GG+L
Sbjct: 583 -----STSYQNGRRVGTVSLHEDFVKILVSEPAEHLIAKQLPMVCPPRPWKGFYDGGFLE 637
Query: 461 LPSYVMRTHGSRKQQE--ALKSVTGNCMKKVFEALDTLGSTKWRVNKQVLSVLESIWVSG 518
+R + Q+ + + + ++F +D LG T WR+NKQV SV+ W SG
Sbjct: 638 SSQPFLRVKYNETSQKDYGVAAAERGDLDQLFAGVDILGKTGWRINKQVFSVMLEAWNSG 697
Query: 519 GNIAGLVDRNDVLIPEKPLSEDMTEVQKWKWSVRKAKKINQER---HSQRCDTELKLSVA 575
IA L N + +E+ ++W W + K + I+ ER HS RC ++ +A
Sbjct: 698 EEIANLPPLNKQYPEVERPAENAPPKERWNWFL-KMRMIDNERSGIHSNRCFQNFQMEIA 756
Query: 576 RRMKDEEGFYYPHNLDFRGRAYPMHPHLNHLSSDVCRGVLEFAEGRPLGKSGLRWLKIHL 635
+ DE FY PHN+DFRGRAYP+ P+LN + +D RG+L F GR LG GLRWLKIHL
Sbjct: 757 KAYLDET-FYLPHNVDFRGRAYPIPPYLNQMGADNARGLLLFDRGRELGADGLRWLKIHL 815
Query: 636 ANLFSGGVEKLSHDGRLAFVENHLYEIFDSAENPINGSRWWLTAEDPFQCLAACINLSEA 695
AN++ G +K S R F +H+ +++DS +NP+ G RWWLTAEDP+QCLA C L+ A
Sbjct: 816 ANVY--GYDKASLSDRAQFPMDHIDDVYDSVQNPLKGRRWWLTAEDPWQCLATCYELANA 873
Query: 696 LKSSSPHSVISHLPIHQDGSCNGLQHYAALGRNTLEAAAVNLVAGEKPADVYSEIAVRVH 755
L S P +S LPIHQDGSCNGLQHYAALG + A VNL G+KPADVY+ +
Sbjct: 874 LDSPDPTKYVSRLPIHQDGSCNGLQHYAALGGDIAGARQVNLEPGDKPADVYTGVC---- 929
Query: 756 EIMKRDSNKDPSKHPQALLAKILIDQVDRKLVKQTVMTSVYGVTFVGAREQIKRRLEEK- 814
E++K D +D +K LAK+L ++ RK+VKQTVMT+VYGVTF+GA Q++++++
Sbjct: 930 ELVKADIKEDAAKGDA--LAKMLDGRITRKVVKQTVMTNVYGVTFLGAVRQVRKQVDALI 987
Query: 815 GHITDDRQLFAAACYAAKVTLTALGEIFEAARSIMGWLGDCAKVIASENQP--------- 865
+ + R A+ Y A+ LG +F A I WLGDCA I+S P
Sbjct: 988 PEVVEARLSGKASSYIARKIFKGLGALFTGAHEIQYWLGDCANRISSSISPAQQDRMYQK 1047
Query: 866 ---------------------------------VRWTTPLGLPVVQPYCKNERHLIRTSL 892
V WTTPL LPVVQPY N+ I+T+L
Sbjct: 1048 EYGVQTEPKERPQSRRKKAKSKEILESGRFLSTVVWTTPLKLPVVQPYRVNKGMKIQTNL 1107
Query: 893 QVLALQRE--GNLVKIRKQRTAFPPNFVHSLDGSHMMMTAVACRDAGLHFAGL 943
Q + L + + V RKQ AFPPNF+HSLD +HM+++A+ + GL F+ +
Sbjct: 1108 QNITLAQPSVADSVNKRKQLQAFPPNFIHSLDATHMILSALKANELGLTFSAV 1160
>gi|219127811|ref|XP_002184121.1| rpot-like RNA polymerase [Phaeodactylum tricornutum CCAP 1055/1]
gi|217404352|gb|EEC44299.1| rpot-like RNA polymerase [Phaeodactylum tricornutum CCAP 1055/1]
Length = 1188
Score = 451 bits (1161), Expect = e-124, Method: Compositional matrix adjust.
Identities = 296/882 (33%), Positives = 452/882 (51%), Gaps = 138/882 (15%)
Query: 178 LRRRQVKQETEAWERMVDEYKELEAKMIEKRLAPNLPHIKGLFLGWFGPLSEAIEREQK- 236
L Q+ E EA + + Y+ + ++ +L ++ L W+ PL IE QK
Sbjct: 260 LEELQLWLECEAQQESITRYQHVIDSARTRKDYASLSLVQRHVLQWYQPLKHEIESLQKA 319
Query: 237 ----------MQRTKKQKAAYAPHIELLPADKVAVIVMHK--MMGLVMAGHEDRCVQVVQ 284
+ TK+ Y P I LP +K+AVI H+ M GL G + R
Sbjct: 320 YIFKEQDPEGVVLTKRAANVYGPFICSLPPEKLAVICAHEAIMSGLSNPGVDGRDGTAFT 379
Query: 285 A-AVHIGMAIEQEIRIHS-----FLEKTKNYKRK---KIIADTEEVLSKEKELLRKRVNS 335
A A IG A+EQE+ I F E + + +I+ EE + + EL +++
Sbjct: 380 AVARRIGDAVEQEVVIQRMLHRRFKESQARHSTQDPNRILPKPEEEVEGDVELSTDKIDE 439
Query: 336 ------------------------------------------LIKSKRVME-----AQKL 348
+K + V+E A+ +
Sbjct: 440 DMNDGNATTRSKSSTGTEDVHKWAYAASHLKNYLDEISYRKPSVKKRLVIEYAIRRARTI 499
Query: 349 LKNEETKPWGRDTQAKLGSRLVELLIETAYVQHPVNPADYSPPDVRPAFRHRFKTILKHP 408
L+N+E W + +LG+ L ++L+ A V+ AF + I K
Sbjct: 500 LENDEA--WTESQKIQLGAVLFQVLLNKANVR--------IDGKQEKAFTYEKFWISKQK 549
Query: 409 GQKTT----KRYGVVECDPLVLEGLDRSAKHMLIPYVPMLVPPKKWKGYNKGGYLFLPSY 464
Q + + ++ D L G + + PM+VPPK W ++GGY L +
Sbjct: 550 VQSIVSMNDRLHKMLVSDKLQSFGTTTTRQK------PMIVPPKPWSRPDEGGYKMLRTE 603
Query: 465 VMRTHGSRKQQEALKSVTGNCMKKVFEALDTLGSTKWRVNKQVLSVLESIWVSGGNIAGL 524
++R HG Q+E L++V + VF+ L+ LG WR+N++VL+V + W + + +
Sbjct: 604 LLRYHGCNMQKEVLQNVD---LSIVFDGLNALGRVPWRINQRVLTVAQRCWDNNIPLGDI 660
Query: 525 VDRNDVLIPEKPLSEDMTEVQKWK-------------------WS-VRKAKKINQERHSQ 564
++D +PE+PL E Q W+ W+ R+ K+ N + S
Sbjct: 661 PSKDDNPLPEEPLHPKRQE-QFWEPETPGYESYVEEYRLYRESWNKFRRVKQRNMDLRSL 719
Query: 565 RCDTELKLSVARRMKDEEGFYYPHNLDFRGRAYPMHPHLNHLSSDVCRGVLEFAEGRPLG 624
RC LKL A + K+ E ++P+N+DFRGRAYP+ PHL+++ SD+CRGVL+FAE +PLG
Sbjct: 720 RCSAMLKLDQAEKFKEFEEIFFPYNMDFRGRAYPVPPHLSNVGSDLCRGVLKFAEAKPLG 779
Query: 625 KSGLRWLKIHLANLFSGGVEKLSHDGRLAFVENHLYEIFDSAENPINGSRWWLTAEDPFQ 684
GL WLK+HLAN G +K+S D R+ FV+++L ++ SAE+P G RWW++ EDPFQ
Sbjct: 780 PRGLYWLKVHLANF--AGKDKMSFDDRVKFVDDNLEQVRLSAEDPFAGERWWMSLEDPFQ 837
Query: 685 CLAACINLSEALKSSSPHSVISHLPIHQDGSCNGLQHYAALGRNTLEAAAVNLVAGEKPA 744
LA C+ + +A+ +P S + LP+H DGSCNGLQHYAALGR+++ AVNL A ++P
Sbjct: 838 GLATCLEIIDAIDCGNPESFLCSLPVHMDGSCNGLQHYAALGRDSVGGKAVNLCAYDEPQ 897
Query: 745 DVY----SEIAVRVHEIMKRDSNKDPS-------KHPQAL----LAKILIDQVDRKLVKQ 789
DVY E+ RV +R + D S K + L AK++ +DR +VK+
Sbjct: 898 DVYVGVMHEVVRRVAAEAERQLDFDTSDLESLSRKQKKELSYNRAAKLVNGLIDRGVVKR 957
Query: 790 TVMTSVYGVTFVGAREQIKR----RLEEKGHITDD--RQLFAAACYAAKVTLTALGEIFE 843
TVMTSVYGVT++GAR+QI+ +LE +GH D+ ++F A Y A +T+ +G++F
Sbjct: 958 TVMTSVYGVTYIGARQQIQEKIISKLEAQGHDVDEMSNEIFQACGYVASLTMEVMGDLFT 1017
Query: 844 AARSIMGWLGDCAKVIASENQPVRWTTPLGLPVVQPYCKNERHLIRTSLQVLALQREGNL 903
AR M WL CA++I P+ W +P+GLP +QPY + + I T LQ + L E +
Sbjct: 1018 GARETMNWLTTCARMITQHGFPLAWVSPIGLPAIQPYRQKKAATIVTLLQTVTLINESDD 1077
Query: 904 VKIRKQR--TAFPPNFVHSLDGSHMMMTAVACRDAGLHFAGL 943
+ I KQR +AFPPNF+HSLD SHM++TA+ GL F+ +
Sbjct: 1078 LPIHKQRQVSAFPPNFIHSLDSSHMLLTALEMDRRGLTFSAV 1119
>gi|213406824|ref|XP_002174183.1| DNA-directed RNA polymerase [Schizosaccharomyces japonicus yFS275]
gi|212002230|gb|EEB07890.1| DNA-directed RNA polymerase [Schizosaccharomyces japonicus yFS275]
Length = 1169
Score = 451 bits (1161), Expect = e-124, Method: Compositional matrix adjust.
Identities = 281/802 (35%), Positives = 439/802 (54%), Gaps = 68/802 (8%)
Query: 181 RQVKQETEAWERMVDEYKELEAKMIEKRLAPNLPH---IKGLFLGWFGPLSEAIERE-QK 236
RQ E +A E + E++ +++ R N PH + L W+ L I+ E ++
Sbjct: 294 RQRLMEKKALESSIAEWRHSYNEIL--RRGENPPHSRSLNALLYVWYEKLEALIQEEFRQ 351
Query: 237 MQRTKKQKAA---------YAPHIELLPADKVAVIVMHKMMGLVMAGHEDRCVQVVQAAV 287
++ ++ KA+ YA +++LL K+A I + +M+ V V+ A +
Sbjct: 352 IEDSENNKASPYKSRTRAEYAQYLKLLSPSKLAAITVLEMLTFVTNKRYCTGVRSTFALM 411
Query: 288 HIGMAIEQEIRIHSFLEKTKNYKRKKIIADTEEVLSKEKELLRKRVNSLIKSKRVMEAQK 347
+G A E+E L+K + D++++ S + NS +K R E
Sbjct: 412 SVGRAFEKEY-FSEQLQKIEAEGNLPKSVDSKKLFSSPRLF-----NSFVKKIRDNEDNG 465
Query: 348 LLKNEETKPWGRDTQAKLGSRLVELLIETAYVQH-PVNPADYSPP-DVRPAFRHRFKTIL 405
++++ +PW + K+ S V LLI +A ++ ++P S AF+H ++ +
Sbjct: 466 IVQSSLYQPWSPNILVKVASVTVSLLINSAKIRDSALDPETKSTVFQDSSAFQHGYRYL- 524
Query: 406 KHPGQKTTKRYGVVECDPLVLEGL--DRSAKHMLIPY-VPMLVPPKKWKGYNKGGYLFLP 462
++ GV+ P++ + L + S H L PY +PMLV P+ W +N GGY +
Sbjct: 525 ------AGRKVGVIVAHPVLYDILASELSGAH-LPPYRLPMLVKPRPWLMWNSGGYYYSS 577
Query: 463 SYVMRTHGSRKQQEALKSVTGNC-MKKVFEALDTLGSTKWRVNKQVLSVLESIWVSGGNI 521
V+R S +Q LK+ + + +K + E L LG+ W+VN++V +L IW +G +
Sbjct: 578 ESVLRFKESHEQLLYLKAASDSGQLKDLLEGLTALGNVGWKVNRKVYDMLVKIWNTGESF 637
Query: 522 AGLVDRNDVL----IPEKPLSEDMTEVQKWKWSVRKAKKINQERHSQRCDTELKLSVARR 577
+ N L +PEK + D + +W +++ +HSQRC+ L +A+
Sbjct: 638 LSIPSANTTLDIQEMPEKSI--DPSARAEWLRMLKERSLDFASQHSQRCEFNYTLEIAKA 695
Query: 578 MKDEEGFYYPHNLDFRGRAYPMHPHLNHLSSDVCRGVLEFAEGRPLGKSGLRWLKIHLAN 637
E FY+PHN+DFRGRAYP+ HL+H++SD CR +L FAEG+PLG+ G +WLK+ LAN
Sbjct: 696 FL-HETFYFPHNVDFRGRAYPIPSHLHHVNSDFCRSLLIFAEGKPLGEEGFQWLKVQLAN 754
Query: 638 LFSGGVEKLSHDGRLAFVENHLYEIFDSAENPINGSRWWLTAEDPFQCLAACINLSEALK 697
LF G K + R+ FV+NHL +IF+S + P++G ++W A+DPFQ LA C +++A++
Sbjct: 755 LF--GKNKSTIQERIDFVDNHLQDIFNSVDKPLDGEQFWTKADDPFQALAVCFEIADAIR 812
Query: 698 SSSPHSVISHLPIHQDGSCNGLQHYAALGRNTLEAAAVNLVAGEKPADVYSEIAVRVHEI 757
S P S ISH+P+ QDG+CNGLQHYAALG + A VNL +P DVY+ +A RV I
Sbjct: 813 SGDPSSFISHVPVQQDGTCNGLQHYAALGGDPEGAREVNLEPSNRPNDVYAAVAARVISI 872
Query: 758 MKRDSNK-DPSKHPQALLAKILIDQVDRKLVKQTVMTSVYGVTFVGAREQIKRRLEEKGH 816
+K+++ DP +A++L D+V R ++KQ VMT+VYGVT+VGAR QI+++L+ +
Sbjct: 873 LKKEAAAGDP-------MAELLKDRVTRTVIKQPVMTNVYGVTYVGARAQIEKQLKLQED 925
Query: 817 ITDDRQLFAAACYAAKVTLTALGEIFEAARSIMGWLGDCAKVIA-------------SEN 863
I D L A+ + AK +L +F+ A I WL DCA +IA +
Sbjct: 926 IPKDL-LRDASAFLAKRVFQSLRALFKRAHEIQDWLADCAALIAHSVPEEALKQKELDKM 984
Query: 864 QPVRWTTPLGLPVVQPYCKNERHLIRTSLQVLALQREGNLVKI--RKQRTAFPPNFVHSL 921
V WTTPL LPVVQPY K I T+LQ + L+ + + RKQ TA PPNF+HSL
Sbjct: 985 TAVVWTTPLNLPVVQPYRKFPSKQITTNLQSVYLEDPDSNAPVDPRKQTTAVPPNFIHSL 1044
Query: 922 DGSHMMMTAVACRDAGLHFAGL 943
D +HM MT + C+ + F +
Sbjct: 1045 DATHMFMTCLKCKKRNITFVSV 1066
>gi|118360511|ref|XP_001013489.1| DNA-dependent RNA polymerase family protein [Tetrahymena thermophila]
gi|89295256|gb|EAR93244.1| DNA-dependent RNA polymerase family protein [Tetrahymena thermophila
SB210]
Length = 1410
Score = 451 bits (1160), Expect = e-124, Method: Compositional matrix adjust.
Identities = 280/821 (34%), Positives = 449/821 (54%), Gaps = 87/821 (10%)
Query: 178 LRRRQVKQETEAWERMVDEYKELEAKMIEKRLAPNLPHIKGLFLGWFGPLSEAIEREQK- 236
L RQ+ E E+ + V+++ ++ + + LA N+ K + WF L + I+ EQ+
Sbjct: 405 LFERQLILEQESQSQAVNKFLKVYEDLNKFGLAVNIGFAKRYIMNWFPNLCKVIKEEQQQ 464
Query: 237 --MQRTKKQKAAYAPHIELLPADKVAVIVMHKMMGLVM----------AGHEDRCVQ--V 282
+ K ++ YA ++ L A+++A++ + ++M ++ E+ V +
Sbjct: 465 CLLGELKGERKYYATYLTKLSAERIAILSLTELMKQILRISNKFKESAENMENTIVDCSI 524
Query: 283 VQAAVH--IGMAIEQEI---------------RIHSFLEKTK------------NYKRKK 313
V A+ IG A+ + + S +EK + KK
Sbjct: 525 VSKAIFSSIGEAVNLQYIYEQEEKLNKEKEKKDLESLVEKINSNNTSNSSEEEVTQRAKK 584
Query: 314 IIADTEEVLSKEKELLRKRVNSLIKSKRVMEAQKLLKNEETKPWGRDTQAKLGSRLVELL 373
+AD K KE +K + SL K K KL E P + Q K+GS L+ L+
Sbjct: 585 YLAD------KTKEANQKIMESLYKKKN--STSKLNYQEIGIP--KTIQLKIGSLLIYLM 634
Query: 374 IETAYVQHPVNPADYSPPDVRPAFRHRFKTILKHPGQKTTKRYGVVECDPLVLEGLDRSA 433
ET ++ N ++ + P+++ + GV+ + + L +
Sbjct: 635 KETIQIR---NEQNFWIHLLVPSYK---------KSKNNDGYVGVININEDFIISLYEQS 682
Query: 434 KHMLIPY------VPMLVPPKKWKGYNKGGYLFLPSYVMRTHGSRKQQEALKSVTGNCMK 487
+ P+ +PM+ P W+ Y GGY P+ +MR H S Q++ L + + +
Sbjct: 683 EKSESPFMHLERCLPMIYKPAPWQDYEIGGYYQRPTNLMRIHESPIQEKVL---SYSDLS 739
Query: 488 KVFEALDTLGSTKWRVNKQVLSVLESIWVSGGNIAGLVDRNDVLIPEKPLSEDMTEVQKW 547
K++ L+T+ T WR+NK+V V+E IW GG G + R + + E +
Sbjct: 740 KMYNILNTVSQTAWRINKKVFDVMEKIWEEGGG-QGEIPRRFYDYKDYVYQYQLKECKNR 798
Query: 548 KWSVRKAKKINQER--HSQRCDTELKLSVARRMKDEEGFYYPHNLDFRGRAYPMHPHLNH 605
R KKI ++R HS R D +LK++VA+ ++ E Y+PHN+DFRGR YP+ PHLNH
Sbjct: 799 DEQQRLMKKIQEQRDMHSMRSDFQLKINVAKAFRNIEKIYFPHNVDFRGRIYPIPPHLNH 858
Query: 606 LSSDVCRGVLEFAEGRPLGKSGLRWLKIHLANLFSGGVEKLSHDGRLAFVENHLYEIFDS 665
+ +D+ RG+LE++E + +GK+G WLK+HL+NL G +KLS R+AF E+ +
Sbjct: 859 MGADISRGLLEYSESKKIGKTGWYWLKVHLSNLL--GQDKLSFPERVAFAESQFENVKRW 916
Query: 666 AENPINGSRWWLTAEDPFQCLAACINLSEALKSSSPHSVISHLPIHQDGSCNGLQHYAAL 725
A +P+ R W+ ED +Q LA +++EALK +P ISHL +H DGSCNGLQHYAA+
Sbjct: 917 ASDPLK-HREWIQVEDAWQALATIFDVAEALKLENPEDYISHLHVHMDGSCNGLQHYAAI 975
Query: 726 GRNTLEAAAVNLVAGEKPADVYSEIAVRVHEIMKRDSNKDPSKHPQALLAKILIDQVDRK 785
GR+ A VNL+ +KP D+YS +A V + + +D+N D +K+ +AK L + RK
Sbjct: 976 GRDKDGAMQVNLMNAQKPGDLYSHVARMVEQRVGKDANDDLAKY--NAIAKKLSGNIKRK 1033
Query: 786 LVKQTVMTSVYGVTFVGAREQIKRRLEEKGHITDDRQLFAAACYAAKVTLTALGEIFEAA 845
+VKQTVMTSVYGVTFVGAR+QI ++L +K +T++ + + A+ Y A+ TL + ++F +A
Sbjct: 1034 VVKQTVMTSVYGVTFVGARKQIYKQLRDKDFLTEE-EAYEASYYLAQTTLDCIKDLFSSA 1092
Query: 846 RSIMGWLGDCAKVIASENQPVRWTTPLGLPVVQPY-CKNERHLIRTSLQVLALQREGNLV 904
I WL +CA +IA+ + PV W TP+GLPVVQPY K + +I T +Q +A++++ + +
Sbjct: 1093 HYIKKWLINCAGLIANTSNPVSWITPMGLPVVQPYRSKGQLDVINTVIQKIAVEQDSDRL 1152
Query: 905 KIR--KQRTAFPPNFVHSLDGSHMMMTAVACRDAGLHFAGL 943
I KQR+AFPPN++HSLD +H+M TA+ C G+HFA +
Sbjct: 1153 PINKSKQRSAFPPNYIHSLDSTHLMYTALECIKRGMHFAAV 1193
>gi|67901244|ref|XP_680878.1| hypothetical protein AN7609.2 [Aspergillus nidulans FGSC A4]
gi|40742605|gb|EAA61795.1| hypothetical protein AN7609.2 [Aspergillus nidulans FGSC A4]
gi|259483938|tpe|CBF79737.1| TPA: Putative DNA-directed RNA polymerase Fragment (EC 2.7.7.6)
[Source:UniProtKB/TrEMBL;Acc:Q70TF3] [Aspergillus
nidulans FGSC A4]
Length = 1391
Score = 451 bits (1160), Expect = e-123, Method: Compositional matrix adjust.
Identities = 279/760 (36%), Positives = 403/760 (53%), Gaps = 80/760 (10%)
Query: 242 KQKAAYAPHIELLPADKVAVIVMHKMMGLVMAGHEDRCVQVVQAAVHIGMAIEQEIRIHS 301
+++ Y P++ ++ +++A + + + + D+ +++ AV IG + +E+ +
Sbjct: 423 RERVDYGPYLRMVKPEELASLTILTTINNLTRNGLDKGIKLAPLAVAIGNDVYEEVALQR 482
Query: 302 FLEKTKNYKRKKIIADTEEVLSKEKELLRKRVNSLIKSKRVMEAQKLLKNEETK-PWGRD 360
+E+ RKK + V ++ L ++ +K A K ++ EE W
Sbjct: 483 MVER-----RKKEMNSAHRVKLIKQIFLGRKDRDKLKGINWKNALKSMEQEEPDIVWATA 537
Query: 361 TQAKLGSRLVELLIETAYVQHPVNPADYSPPDVR-------PAFRHRFKTILKHPGQKTT 413
+AK+G+ L+ LL + A V PVN A + R P F+H ++
Sbjct: 538 IKAKVGAVLMSLLYDVAKVPVPVNEAAAAKKIKRRDEVVMQPVFQHSYQITW-------G 590
Query: 414 KRYGVVECDPLVLEGLDRS-AKHMLIPYVPMLVPPKKWKGYNKGGYLFLPS-YVMRTHGS 471
+R G + +P +++ L R A+ +L +PML P+ WKGY G Y + + +V T G
Sbjct: 591 RRTGYIHVNPEMIKLLTREPAEDLLGRQLPMLCKPRPWKGYKDGAYFYHQNLFVRSTPGE 650
Query: 472 RKQQEALKSVTGN-CMKKVFEALDTLGSTKWRVNKQVLSVLESIWVSGGNIAGLVDRNDV 530
Q +K+ N +K + + LD LG T W +N+ V +V+ W +G IA L +
Sbjct: 651 SLQPTYVKAALENDGLKMIRKGLDILGGTGWVINRDVFNVMLEAWNTGEPIADLAPLDPD 710
Query: 531 LIPE-KPLSEDMTEVQK-WKWSVRKAKKINQERHSQRCDTELKLSVARRMKDEEGFYYPH 588
L KP E+ E +K W VR + HSQRC ++ VAR +E FY PH
Sbjct: 711 LPIPPKPSPEEGYEAEKEWHTKVRDIENQRGGYHSQRCFQNFQMEVARSYLNET-FYLPH 769
Query: 589 NLDFRGRAYPMHPHLNHLSSDVCRGVLEFAEGRPLGKSGLRWLKIHLANLFSGGVEKLSH 648
N+DFRGRAYP+ P+LN +++D RG+L F+E +PLG+SGLRWLKI +ANL G +K S
Sbjct: 770 NMDFRGRAYPIPPYLNQMAADNARGLLLFSEAKPLGESGLRWLKIQIANL--AGFDKASL 827
Query: 649 DGRLAFVENHLYEIFDSAENPINGSRWWLTAEDPFQCLAACINLSEALKSSSPHSVISHL 708
R F +HL ++ DSA N ++G RWWL AEDP+QCLAAC L AL+ +P S L
Sbjct: 828 SEREQFAMDHLDDVLDSANNGLHGRRWWLQAEDPWQCLAACCELRNALQHPNPTEYASRL 887
Query: 709 PIHQDGSCNGLQHYAALGRNTLEAAAVNLVAGEKPADVYSEIAVRVHEIMKRDSNK-DPS 767
PIHQDGSCNGLQHYAALG + L A VNL ++P+DVYS +A V E + ++ + DP
Sbjct: 888 PIHQDGSCNGLQHYAALGGDKLGAQQVNLEPSDRPSDVYSAVAQYVKEAVATEAAQGDP- 946
Query: 768 KHPQALLAKILIDQVDRKLVKQTVMTSVYGVTFVGAREQIKRRLEEKGHITDDRQLFAAA 827
+AK+L ++ RK+VKQTVMT+VYGVTF+GA +QI+++L D + A
Sbjct: 947 ------IAKMLEGKITRKVVKQTVMTNVYGVTFIGAMKQIRKQLANHYPELSDHEKKTGA 1000
Query: 828 CYAAKVTLTALGEIFEAARSIMGWLGDCAKVIASENQP---------------------- 865
Y A+ ALG +FE AR I WLGD A I P
Sbjct: 1001 IYIARKVFQALGTMFEGARDIQHWLGDSANRITQSLPPEQIEDLAKEVLNPSFSTLPLTS 1060
Query: 866 --------------------VRWTTPLGLPVVQPYCKNERHLIRTSLQVLAL--QREGNL 903
V WTTPLGLPVVQPY + TS Q L++ Q
Sbjct: 1061 RGKSKKSLSSSDPSAHFKTTVIWTTPLGLPVVQPYRNRLPRRVVTSFQSLSVVEQDSRYC 1120
Query: 904 VKIRKQRTAFPPNFVHSLDGSHMMMTAVACRDAGLHFAGL 943
V RKQ AFPPNF+HSLD +HMM++A+AC AGL F+ +
Sbjct: 1121 VTRRKQLQAFPPNFIHSLDATHMMLSAIACHQAGLTFSAV 1160
>gi|402220117|gb|EJU00189.1| DNA/RNA polymerase [Dacryopinax sp. DJM-731 SS1]
Length = 988
Score = 450 bits (1157), Expect = e-123, Method: Compositional matrix adjust.
Identities = 283/788 (35%), Positives = 428/788 (54%), Gaps = 96/788 (12%)
Query: 216 IKGLFLGWFGPLSE-------AIEREQKMQRTKK--QKAAYAPHIELLPADKVAVIVMHK 266
+K W+ L E +E E+K+ + +K A P + LL +K+A + + +
Sbjct: 60 LKKWMWNWYQALKERLDNEIPTLEEEEKLAQRRKPTDGDAIGPFLRLLSTEKMATMTISE 119
Query: 267 MMGLVMAGHEDRCVQVVQAAVHIGMAIEQEIRIHSFLEKTKNYKRKKIIADTEEVLSKEK 326
L+ G D V+ + A+ +G +EQE L + ++ ++ +E L++
Sbjct: 120 ---LLRYGTSDGGVRTARTAITLGRVVEQEYNAEVALAQ-RSRGPDPVVLTSEGSLTELA 175
Query: 327 ELLRKRVNSLIKSKRVMEAQKLLKNEETKPWGRDTQAKLGSRLVELLIETAYVQH----P 382
+ ++ +S + + W + + ++G L+ +I+ A + P
Sbjct: 176 AIRQQARDSEDFTMAI-----------PPDWTQVIRGRVGGFLLNAVIDVATITRRGIRP 224
Query: 383 VNPADYSPPDVRPAFRHRFKTILKHPGQKTTKRYGVVECDPLVLEGLDRSA-KHMLIP-Y 440
+ S + +PAF H ++ + ++ G+++ +P + E L K L P
Sbjct: 225 STGEEVS--EEQPAFAHCYEFL-------HGRKIGLIKFNPELTEQLSSEPIKDALHPRQ 275
Query: 441 VPMLVPPKKWKGYNKGGYLFLPSYVMRTHGSRKQQEALKSVT-GNCMKKVFEALDTLGST 499
+PML+PP+ W +G Y++ + VMR S +Q L+S + ++ ++ ALD LGST
Sbjct: 276 LPMLIPPRPWIDVERGAYMYSRTSVMRYKDSLEQSSFLRSASSAGHLESMYAALDVLGST 335
Query: 500 KWRVNKQVLSVLESIWVSGGNIAGLVDRNDVLIPEKPLSEDMTEVQ-KWKWSVRKAKKIN 558
W +N+ + V+ ++W SG A + L E P+ D E K K +A +
Sbjct: 336 PWTINRPIFDVVIAVWNSGKQFAKIPPAG--LEGEDPVKPDNYETDPKAKRDFVRAMSTS 393
Query: 559 ----QERHSQRCDTELKLSVARRMKDEEGFYYPHNLDFRGRAYPMHPHLNHLSSDVCRGV 614
E HS RCDT KL +AR E FY+PHN+DFRGRAYP+ P+LNH+ D+CRG+
Sbjct: 394 IQKRHENHSMRCDTNYKLEIARAFLGER-FYFPHNVDFRGRAYPVPPNLNHMGDDLCRGL 452
Query: 615 LEFAEGRPLGKSGLRWLKIHLANLFSGGVEKLSHDGRLAFVENHLYEIFDSAENPINGSR 674
L FA+ + LG+ GLRWLKIH AN F G +K S + R+ + HL EI+DSA+ P++G R
Sbjct: 453 LTFADKKALGERGLRWLKIHAANKF--GYDKASFEERVTWTMEHLDEIYDSAKKPLDGQR 510
Query: 675 WWLTAEDPFQCLAACINLSEALKSSSPHSVISHLPIHQDGSCNGLQHYAALGRNTLEAAA 734
WWL A+DP+Q LA+CI L AL+S +P S LP+HQDG+CNGLQHYAALG + A
Sbjct: 511 WWLKADDPWQFLASCIELHNALESPNPAEFESSLPVHQDGTCNGLQHYAALGGDGQGARQ 570
Query: 735 VNLVAGEKPADVYSEIAVRVHEIMKRDSNKDPSKHPQALLAKILIDQVDRKLVKQTVMTS 794
VNL G++PADVY+ +A V + + + K K AK L ++ RK+VKQTVMT+
Sbjct: 571 VNLDVGDRPADVYTFVANMVEKRLDEAAAKGDEK------AKWLQGRIARKVVKQTVMTT 624
Query: 795 VYGVTFVGAREQIKRRLEE-KGHITDDRQLFAAACYAAKVTLTALGEIFEAARSIMGWLG 853
VYGVTFVGAR+QI++++E G +++ +A A Y A++TL+ +G++F A+SI WL
Sbjct: 625 VYGVTFVGARDQIRKQIEALPGVSISEQESYAMAVYVARLTLSCIGDLFGGAKSIQLWLN 684
Query: 854 D-CAKVIAS-------------------ENQPVR---------------WTTPLGLPVVQ 878
CA + S N P++ WTTPLG+PVVQ
Sbjct: 685 KVCALITKSIPPERIDLLLRDKEYAGEVRNAPMKRTYTSLVKEQMTSMIWTTPLGMPVVQ 744
Query: 879 PYCKNERHLIRTSLQVLALQREGNL---VKIRKQRTAFPPNFVHSLDGSHMMMTAVACRD 935
PY K + I TSLQ L + + NL V RKQ +AFPPNF+HSLD +HMM+TA+ CRD
Sbjct: 745 PYRKQAKKQIYTSLQSLFIA-DPNLPMEVSSRKQASAFPPNFIHSLDATHMMLTALGCRD 803
Query: 936 AGLHFAGL 943
L FA +
Sbjct: 804 KQLTFASV 811
>gi|340508072|gb|EGR33869.1| hypothetical protein IMG5_034000 [Ichthyophthirius multifiliis]
Length = 926
Score = 450 bits (1157), Expect = e-123, Method: Compositional matrix adjust.
Identities = 280/800 (35%), Positives = 436/800 (54%), Gaps = 73/800 (9%)
Query: 178 LRRRQVKQETEAWERMVDEYKELEAKMIEKRLAPNLPHIKGLFLGWFGPLSEAIEREQKM 237
L RQ+ E + ++ V+++ ++ + L N+ K + WF L + I EQ+
Sbjct: 32 LYERQLLLEQSSQDQAVNKFFQVYESLSNFGLNVNMGFAKQHIVQWFPNLCKVIREEQQQ 91
Query: 238 QRT---KKQKAAYAPHIELLPADKVAVIVMHKMMGLVMAGHE----------DRCVQVVQ 284
R K ++ YA + + A+K+AVI + ++M ++ E DR +
Sbjct: 92 CRLGTLKGERKYYAQFLAQIEAEKLAVISLTELMKCILKLSEKEKKERLDQKDRVIVSKL 151
Query: 285 AAVHIGMAIEQEIRIHSFLEKTKNYKRKKIIADTEEVLSKEKELLRKRVNSLIKSKRVME 344
IG ++ + K ++K + +++ ++ + N L+ + +
Sbjct: 152 LFAQIGKSVNVQYIFQQEEALKKEKEKKDLDELVQQMKTENQ-------NQLLNNIYTNK 204
Query: 345 AQKLLKNEETKPWGRDTQAKLGSRLVELLIET----------------AYVQHPVNPADY 388
+ K+ N E ++TQ K+GS LV ++ E +Y++ N
Sbjct: 205 SNKIQINYEQLGIPKETQYKIGSLLVYVMKECIKIRNEDNFWVSLLVPSYIKSKRNQGFV 264
Query: 389 SPPDVRPAFRHRFKTILKHPGQKTTKRYGVVECDPLVLEGLDRSAKHMLIPYVPMLVPPK 448
+V F H Q+T K D L + LDRS +PM+ PP
Sbjct: 265 GVINVNQYFLHSM-------NQETDK------TDSLFMH-LDRS--------LPMIYPPA 302
Query: 449 KWKGYNKGGYLFLPSYVMRTHGSRKQQEALKSVTGNCMKKVFEALDTLGSTKWRVNKQVL 508
KW+ Y GGY P+++MR S+ Q+ KS+ + KV+E L+ +G T WR+NK+VL
Sbjct: 303 KWQDYEMGGYYLRPTHLMRFEDSQLQE---KSLFNTDLSKVYEILNIIGKTPWRINKRVL 359
Query: 509 SVLESIWVSGGNIAGLVDRNDVLIPEKPLSEDMTEVQKWKWSVRKAKKINQER--HSQRC 566
+V+E IW GG+I G + + + E + +K + +KI Q+R HS R
Sbjct: 360 NVMEKIWEEGGDI-GEIPKKYYDYTNYIHQYQVDECKDYKEKAKLMRKIQQQRDIHSNRS 418
Query: 567 DTELKLSVARRMKDEEGFYYPHNLDFRGRAYPMHPHLNHLSSDVCRGVLEFAEGRPLGKS 626
D LKL VAR ++ + Y+PHN+DFRGR YP+ PHLNH+ +D CRG+LEF+E + +GK+
Sbjct: 419 DFLLKLKVARAFQNLDRIYFPHNVDFRGRLYPIPPHLNHIGADRCRGLLEFSESKRIGKT 478
Query: 627 GLRWLKIHLANLFSGGVEKLSHDGRLAFVENHLYEIFDSAENPINGSRWWLTAEDPFQCL 686
G WLK+H +NL GV+KLS D R+A+ E+ I A +PI +R WL ED +Q L
Sbjct: 479 GWYWLKVHTSNLL--GVDKLSFDQRVAYTESQFENIKRWASDPIK-NREWLQVEDCWQAL 535
Query: 687 AACINLSEALKSSSPHSVISHLPIHQDGSCNGLQHYAALGRNTLEAAAVNLVAGEKPADV 746
+A +SEAL+ +P ISHL +H DGSCNGLQHYAA+GR+ A VNL KP D+
Sbjct: 536 SAIFEVSEALQLENPEDHISHLHVHMDGSCNGLQHYAAIGRDKYGAEQVNLRDSIKPGDL 595
Query: 747 YSEIAVRVHEIMKRDSNKDPSKHPQALLAKILIDQVDRKLVKQTVMTSVYGVTFVGAREQ 806
YS +A V + + D + S++ + +AK L Q+ RK+VKQTVMTSVYGVTFVGAR+Q
Sbjct: 596 YSHVASMVEQKIDEDCKNELSENYE--IAKKLQGQIKRKIVKQTVMTSVYGVTFVGARQQ 653
Query: 807 IKRRLEEKGHITDDRQLFAAACYAAKVTLTALGEIFEAARSIMGWLGDCAKVIASENQPV 866
I R+L+++ + ++ + A+ Y A VTL + +F A I WL CA +I++ PV
Sbjct: 654 ILRQLKDRDFMNEEDN-YKASYYLATVTLLQIKNLFTQAHYIKKWLISCAALISATGNPV 712
Query: 867 RWTTPLGLPVVQPY-CKNERHLIRTSLQVLALQREGNLVKI--RKQRTAFPPNFVHSLDG 923
W T +GLPVVQPY ++ ++I T +Q + ++ + + I +KQR+AFPPN++HSLD
Sbjct: 713 SWITDMGLPVVQPYRNQSTLNVINTVIQKITIEANHDELPINKQKQRSAFPPNYIHSLDS 772
Query: 924 SHMMMTAVACRDAGLHFAGL 943
+H+M TA+ C G++FA +
Sbjct: 773 THLMYTAIECNKLGIYFAAV 792
>gi|89029825|gb|ABD59451.1| mitochondrial single-subunit RNA polymerase [Acanthamoeba
castellanii]
Length = 512
Score = 450 bits (1157), Expect = e-123, Method: Compositional matrix adjust.
Identities = 226/450 (50%), Positives = 303/450 (67%), Gaps = 17/450 (3%)
Query: 501 WRVNKQVLSVLESIWVSGGNIAGLVDRNDV--LIPEKPLSEDMTEVQKWKWSVRKAKKIN 558
+ +N ++ V+ W +GG IA L R ++ L P D+ QK+ +KAK N
Sbjct: 4 FSINNRMHEVICEAWDNGGGIADLPSRTNLPELEPPADYYSDLEVKQKFDRERKKAKIAN 63
Query: 559 QERHSQRCDTELKLSVARRMKDEEGFYYPHNLDFRGRAYPMHPHLNHLSSDVCRGVLEFA 618
HS RCD KL VA+ +D FYYPHN+DFRGR YP+ PHLNHL D+CRG+L FA
Sbjct: 64 YNLHSLRCDVTYKLQVAKECQDRT-FYYPHNMDFRGRTYPIPPHLNHLGQDLCRGLLTFA 122
Query: 619 EGRPLGKSGLRWLKIHLANLFSGGVEKLSHDGRLAFVENHLYEIFDSAENPINGSRWWLT 678
EG+PLG+SGLRWLK+HLAN+F G +K++ + R+ FVEN++ I DSA NP+ G RWWL
Sbjct: 123 EGKPLGESGLRWLKVHLANVF--GNDKITFEDRVRFVENNMEHIMDSASNPLGGQRWWLK 180
Query: 679 AEDPFQCLAACINLSEALKSSSPHSVISHLPIHQDGSCNGLQHYAALGRNTLEAAAVNLV 738
A+ P+QCLAA I L A S P + +S LPIHQDGSCNGLQHYAALG + + A VNL+
Sbjct: 181 ADKPWQCLAASIELINAYNSGQPETYVSTLPIHQDGSCNGLQHYAALGGDEMGARQVNLL 240
Query: 739 AGEKPADVYSEIAVRVHEIMKRDSNKDPSKHPQALLAKILIDQVDRKLVKQTVMTSVYGV 798
E+P DVYS + E++ R D + + +A+ L+ +VDRK++KQTVMTSVYGV
Sbjct: 241 PSERPQDVYSGVV----ELVVRRLEDDAANGVE--IAQRLLGKVDRKVIKQTVMTSVYGV 294
Query: 799 TFVGAREQIKRRLEEKGHITDDRQLFAAACYAAKVTLTALGEIFEAARSIMGWLGDCAKV 858
TF+GAR+QI+ L++KG ++DD +F A+ Y A T +++ E+F AR IM WL DCA +
Sbjct: 295 TFIGARQQIENALKDKGKVSDD-DMFLASRYLATSTFSSIKEMFSGAREIMTWLSDCATL 353
Query: 859 IASENQPVRWTTPLGLPVVQPYCK--NERHLIRTSLQVLALQREGN---LVKIRKQRTAF 913
IA + +PV W TP+GLPVVQPY + + T+LQ + L +E N V RKQRTAF
Sbjct: 354 IAKQGKPVTWVTPMGLPVVQPYRTKGKQTQTVVTALQNVMLVKEENDSLPVNTRKQRTAF 413
Query: 914 PPNFVHSLDGSHMMMTAVACRDAGLHFAGL 943
PPN+VHSLD +HMM+TA+ C +AGL +A +
Sbjct: 414 PPNYVHSLDSTHMMLTALQCHEAGLTYASV 443
>gi|325094325|gb|EGC47635.1| DNA-directed RNA polymerase [Ajellomyces capsulatus H88]
Length = 1397
Score = 449 bits (1155), Expect = e-123, Method: Compositional matrix adjust.
Identities = 282/825 (34%), Positives = 422/825 (51%), Gaps = 89/825 (10%)
Query: 181 RQVKQETEAWERMVDEYKELEAKMIEKRLAPNLPH--IKGLFLGWFGPLSEAIE------ 232
RQ + E++ E + +K+ E++M+ + +P + W L I
Sbjct: 366 RQRRLESDCVESAIARWKK-ESEMLHRVGVNPIPSKPMGAFLYDWHTQLMSRINEELERI 424
Query: 233 ----REQKMQRTKKQKAAYAPHIELLPADKVAVIVMHKMMGLVMAGHEDRCVQVVQAAVH 288
++ +M Q+ +P++ + DK+A + + + D+ +++ ++
Sbjct: 425 EESEKKSRMSPADSQRVEISPYLRAIKTDKLAALTILSTFNALNKSGVDKGLKLTGLVMY 484
Query: 289 IGMAIEQEIRIHSFLEKTKNYKRKKIIADTEEVLSKEKELLRKRVNSLIKSKRVMEAQKL 348
+G A+ E E K K K I+ L+ K V+ + +V + +
Sbjct: 485 VGKAVYDEYLAMQLRELEKKSKPTKKIS----------ALIDKLVHKGTRKAQVQWRRII 534
Query: 349 LKNEETK---PWGRDTQAKLGSRLVELLIETAYVQHPVNPADYSPPDVRPAFRHRFKTIL 405
+ E+++ W QAK+G+ L +L+ TA V PV D + + F+ +
Sbjct: 535 ARFEQSQRPVDWSPVVQAKIGACLASMLLSTATV--PVPTKDPKTNQQKQTDQAAFRRVY 592
Query: 406 KHPGQKTTKRYGVVECDPLVLEGLDRSA-KHMLIPYVPMLVPPKKWKGYNKGGYLFLPSY 464
+ + R G V + ++E L R +L ++PM+ PP+ W GG+L PS
Sbjct: 593 Q---LERGFRVGYVHANDYIVEKLRREPLGELLAKHLPMVCPPRPWTSARGGGFLEYPST 649
Query: 465 VMRT-HGSRKQQEALKSVTGNC-MKKVFEALDTLGSTKWRVNKQVLSVLESIWVSGGNIA 522
VMR G Q +++ + VF L LG T W++N+ VL+V+ W SG IA
Sbjct: 650 VMRVKQGDISQLSYVETAAARGDLDTVFAGLTVLGKTGWKINRGVLNVMLEAWNSGEEIA 709
Query: 523 GLVDRN-DVLIPEKPLSEDMTEVQKWKWSVRKAKKINQERHSQRCDTELKLSVARRMKDE 581
L N +++ PEKP ++D ++ + + A HSQRC +L +AR ++E
Sbjct: 710 NLAPENPNIIEPEKPDTDDRDILKDYYRARMHATNARTGYHSQRCFQNFQLEIARAYRNE 769
Query: 582 EGFYYPHNLDFRGRAYPMHPHLNHLSSDVCRGVLEFAEGRPLGKSGLRWLKIHLANLFSG 641
FY PHNLDFRGRAYPM P+ N + +D CRG+L F++GR LG SGLRWLKIHLAN+F
Sbjct: 770 T-FYLPHNLDFRGRAYPMPPYFNQMGADHCRGLLLFSKGRELGASGLRWLKIHLANVF-- 826
Query: 642 GVEKLSHDGRLAFVENHLYEIFDSAENPINGSRWWLTAEDPFQCLAACINLSEALKSSSP 701
G +K S R F +HL +I DSA N + G RWWL A DPFQCLAACI L+ A+ P
Sbjct: 827 GFDKASFQEREQFAMDHLEDIRDSAINGLKGKRWWLDAGDPFQCLAACIELTNAMALEDP 886
Query: 702 HSVISHLPIHQDGSCNGLQHYAALGRNTLEAAAVNLVAGEKPADVYSEIAVRVHEIMKRD 761
+SHLP+HQDGSCNGLQHYAALG + + A VNL ++P+D+Y+ +A V + +++D
Sbjct: 887 TKYVSHLPVHQDGSCNGLQHYAALGGDVIGAQQVNLEPSDRPSDIYTGVAEHVKQSIQKD 946
Query: 762 SNKDPSKHPQALLAKILIDQVDRKLVKQTVMTSVYGVTFVGAREQIKRRLEEKGHITDDR 821
+ K AK+L D++ RK+VKQTVMT+VYGVTF+GA Q++++L + H D
Sbjct: 947 AAKGNET------AKLLEDKITRKIVKQTVMTNVYGVTFLGAIRQVRKQLVD--HYPDLL 998
Query: 822 QLFAA---ACYAAKVTLTALGEIFEAARSIMGWLGDCAKVIASE---------------- 862
A A Y A+ ALG +F A I WLGDCA I+
Sbjct: 999 HSGVAGECATYIARKIFVALGSMFTGAHDIQFWLGDCANRISQSLSSEQIEALSDERNLK 1058
Query: 863 ----------------------NQPVRWTTPLGLPVVQPYCKNERHLIRTSLQVLALQ-- 898
V WTTPL LPV QPY + + LQ L+++
Sbjct: 1059 VVGRFQGAKKLAKNIKDPKSHFKSTVVWTTPLKLPVAQPYRDAACVKVFSDLQQLSIRNP 1118
Query: 899 REGNLVKIRKQRTAFPPNFVHSLDGSHMMMTAVACRDAGLHFAGL 943
+ ++V RKQ AFPPNFVHSLD +HM ++AV C + GL F+ +
Sbjct: 1119 QASDVVNKRKQLQAFPPNFVHSLDATHMFLSAVKCDELGLSFSAV 1163
>gi|225558540|gb|EEH06824.1| mitochondrial RNA polymerase [Ajellomyces capsulatus G186AR]
Length = 1397
Score = 448 bits (1153), Expect = e-123, Method: Compositional matrix adjust.
Identities = 282/827 (34%), Positives = 423/827 (51%), Gaps = 93/827 (11%)
Query: 181 RQVKQETEAWERMVDEYKELEAKMIEKRLAPNLPH--IKGLFLGWFGPLSEAIE------ 232
RQ + E++ E + +K+ E++M+ + +P + W L I
Sbjct: 366 RQRRLESDCVESAIARWKK-ESEMLHRVGVNPIPSKPMGAFLYDWHTQLMSRINEELERI 424
Query: 233 ----REQKMQRTKKQKAAYAPHIELLPADKVAVIVMHKMMGLVMAGHEDRCVQVVQAAVH 288
++ +M Q+ +P++ + DK+A + + + D+ V++ ++
Sbjct: 425 EESEKKSRMSPADSQRVEISPYLRAIKTDKLAALTILSTFNALNKSGVDKGVKLTGLVMY 484
Query: 289 IGMAIEQEIRIHSFLEKTKNYKRKKIIADTEEVLSKEKELLRKRVNSLIKSKRVMEAQKL 348
+G A+ E E + + K L+ K V+ + +V + +
Sbjct: 485 VGKAVYDEYLAMQLRE----------LEKKSKPTKKTSALIDKLVHKGTRKAQVQWRRII 534
Query: 349 LKNEETK---PWGRDTQAKLGSRLVELLIETAYVQHPV-NP-ADYSPPDVRPAFRHRFKT 403
+ E+++ W QAK+G+ L +L+ TA V P +P ++ + AFR ++
Sbjct: 535 ARFEQSQRPVDWSPVVQAKIGACLASMLLSTATVPVPTKDPKTNHQKQTDQAAFRRVYQL 594
Query: 404 ILKHPGQKTTKRYGVVECDPLVLEGLDRSA-KHMLIPYVPMLVPPKKWKGYNKGGYLFLP 462
+ R G V + ++E L R +L ++PM+ PP+ W GG+L P
Sbjct: 595 -------ERGFRVGYVHANDYIVEKLRREPLGELLAKHLPMVCPPRPWTSARGGGFLEYP 647
Query: 463 SYVMRT-HGSRKQQEALKSVTGNC-MKKVFEALDTLGSTKWRVNKQVLSVLESIWVSGGN 520
S VMR G Q +++ + VF L LG T W++N+ VL+V+ W SG
Sbjct: 648 STVMRVKQGDISQLSYVETAAARGDLDTVFAGLTVLGKTGWKINRGVLNVMLEAWNSGEE 707
Query: 521 IAGLVDRN-DVLIPEKPLSEDMTEVQKWKWSVRKAKKINQERHSQRCDTELKLSVARRMK 579
IA L N +++ PEKP ++D ++ + + A HSQRC +L +AR +
Sbjct: 708 IANLAPENPNIIEPEKPDTDDRDILKDYYRAKMHATNARTGYHSQRCFQNFQLEIARAYR 767
Query: 580 DEEGFYYPHNLDFRGRAYPMHPHLNHLSSDVCRGVLEFAEGRPLGKSGLRWLKIHLANLF 639
+E FY PHNLDFRGRAYPM P+ N + +D CRG+L F++GR LG SGLRWLKIHLAN+F
Sbjct: 768 NET-FYLPHNLDFRGRAYPMPPYFNQMGADHCRGLLLFSKGRELGASGLRWLKIHLANVF 826
Query: 640 SGGVEKLSHDGRLAFVENHLYEIFDSAENPINGSRWWLTAEDPFQCLAACINLSEALKSS 699
G +K S R F +HL +I DSA N + G RWWL A DPFQCLAACI L+ A+
Sbjct: 827 --GFDKASFQEREQFAMDHLEDIRDSAINGLKGKRWWLDAGDPFQCLAACIELTNAMALE 884
Query: 700 SPHSVISHLPIHQDGSCNGLQHYAALGRNTLEAAAVNLVAGEKPADVYSEIAVRVHEIMK 759
P +SHLP+HQDGSCNGLQHYAALG + + A VNL ++P+D+Y+ +A V + ++
Sbjct: 885 DPTKFVSHLPVHQDGSCNGLQHYAALGGDVIGAQQVNLEPSDRPSDIYTGVAEHVKQSIQ 944
Query: 760 RDSNKDPSKHPQALLAKILIDQVDRKLVKQTVMTSVYGVTFVGAREQIKRRLEEKGHITD 819
+D+ K AK+L D++ RK+VKQTVMT+VYGVTF+GA Q++++L + H D
Sbjct: 945 KDAAKGNET------AKLLEDKITRKIVKQTVMTNVYGVTFLGAIRQVRKQLVD--HYPD 996
Query: 820 DRQLFAA---ACYAAKVTLTALGEIFEAARSIMGWLGDCAKVIASENQP----------- 865
A A Y A+ ALG +F A I WLGDCA I+ P
Sbjct: 997 LLHSGVAGECATYIARKIFVALGSMFTGAHDIQFWLGDCANRISQSLSPEQIEALSDERN 1056
Query: 866 ---------------------------VRWTTPLGLPVVQPYCKNERHLIRTSLQVLALQ 898
V WTTPL LPV QPY + + LQ L+++
Sbjct: 1057 LKVVGRFQGAKKLAKNIKDPKSHFKSTVVWTTPLKLPVAQPYRDAACVKVFSDLQQLSIR 1116
Query: 899 --REGNLVKIRKQRTAFPPNFVHSLDGSHMMMTAVACRDAGLHFAGL 943
+ ++V RKQ AFPPNFVHSLD +HM ++AV C + GL F+ +
Sbjct: 1117 NPQASDVVNKRKQLQAFPPNFVHSLDATHMFLSAVKCDELGLSFSAV 1163
>gi|134082638|emb|CAK42532.1| unnamed protein product [Aspergillus niger]
Length = 1367
Score = 448 bits (1152), Expect = e-123, Method: Compositional matrix adjust.
Identities = 290/835 (34%), Positives = 436/835 (52%), Gaps = 89/835 (10%)
Query: 166 EYREMKKRK-FNLLRRRQVKQET-----EAW-ERMVDEYKE-LEAKMIEKRLAPNLPHIK 217
EY E + R +NL R++Q++ + W + +D K L EKRL
Sbjct: 339 EYAEAESRDMYNLSRQKQLEANSIQAALNRWRQETIDRQKAGLNTTGSEKRLG------- 391
Query: 218 GLFLGWFGPLSEAIEREQKM--------QRT--KKQKAAYAPHIELLPADKVAVIVMHKM 267
+ W L IE E K+ RT ++ Y + + +DK+A + + +
Sbjct: 392 SIINQWHTDLVSRIEAELKLVEQSEAKPPRTLEDTERCEYGVFLRCVDSDKLAALTILSV 451
Query: 268 MGLVMAGHEDRCVQVVQAAVHIGMAIEQEIRIHSFLEKTKNYKRKKIIADTEEVLSKEKE 327
+ G D +++ A IG + E L+K ++ A ++ LS
Sbjct: 452 LSSFGRGGMDSGLKLASIATGIGSELHDEFLAELTLKKESAADAARLRA-VKQTLS---- 506
Query: 328 LLRKRVNSLIKSKRVMEAQKLLKNEETKPWGRDTQAKLGSRLVELLIETAYVQHPVNPAD 387
LRK+ + K ++ + L +++ W +AK+G+ L+ L E A ++ +
Sbjct: 507 -LRKQKDGRAKWHTIV--RNLEQDDPAVAWSARVKAKVGAALMSFLFEVAKAPVKIDNPE 563
Query: 388 YSPPDV--RPAFRHRFKTILKHPGQKTTKRYGVVECDPLVLEGLDRS-AKHMLIPYVPML 444
P++ +PAF+H ++ +R G + P +++ + + +L ++PML
Sbjct: 564 TKKPEISMQPAFQHAYQI-------NWGRRAGFIHLHPEIVKIVTKEPTSDLLGRHLPML 616
Query: 445 VPPKKWKGYNKGGYLFLPSYVMRTHGSRKQQEAL--KSVTGNCMKKVFEALDTLGSTKWR 502
P+ WKG + GGY S ++RT Q A ++ N ++++ + LD LG+T W
Sbjct: 617 SKPRPWKGVSDGGYHVYKSNLIRTTPGETLQPAYVKAALENNGLEQIRQGLDILGNTGWV 676
Query: 503 VNKQVLSVLESIWVSGGNIAGLVDRNDVLIPE-KPLSEDMTEVQK-WKWSVRKAKKINQE 560
+N+ V V+ W SG +A L L KP E+ E +K W +R+ +
Sbjct: 677 INEDVFKVMLEAWNSGEPVADLAPLEPELPHPPKPSPEEGYEAEKKWDNDMREIENRRAG 736
Query: 561 RHSQRCDTELKLSVARRMKDEEGFYYPHNLDFRGRAYPMHPHLNHLSSDVCRGVLEFAEG 620
HSQRC ++ VAR ++E FY PHNLDFRGRAYP+ P+LN + +D RG+L F++
Sbjct: 737 FHSQRCFQNFQMEVARAYRNET-FYLPHNLDFRGRAYPLPPYLNQMGADNARGLLLFSQA 795
Query: 621 RPLGKSGLRWLKIHLANLFSGGVEKLSHDGRLAFVENHLYEIFDSAENPINGSRWWLTAE 680
+PLG+SGLRWLK+ +ANL G +K S R F +HL ++ DSA N ++G RWWL A+
Sbjct: 796 KPLGESGLRWLKVQIANL--SGFDKASLSEREKFTMDHLDDVLDSANNGLHGRRWWLKAD 853
Query: 681 DPFQCLAACINLSEALKSSSPHSVISHLPIHQDGSCNGLQHYAALGRNTLEAAAVNLVAG 740
DP+QCLAAC L AL+ P S LP+HQDGSCNGLQHYAALG + + A VNL
Sbjct: 854 DPWQCLAACCELRNALQHPDPTQFASRLPVHQDGSCNGLQHYAALGGDKIGAQQVNLEPS 913
Query: 741 EKPADVYSEIAVRVHEIMKRDSNKDPSKHPQALLAKILIDQVDRKLVKQTVMTSVYGVTF 800
++P+DVY+ +A V E + R++ + S +AK L ++ RK+VKQTVMT+VYGVTF
Sbjct: 914 DRPSDVYTGVAEFVKEAVAREAAQGHS------VAKYLDGKITRKVVKQTVMTNVYGVTF 967
Query: 801 VGAREQIKRRL-EEKGHITDDRQLFAAACYAAKVTLTALGEIFEAARSIMGWLGDCAKVI 859
+GA +Q++++L + +T D Q A Y A+ ALG +F A I WLGDCA I
Sbjct: 968 MGAMKQVRKQLIDHYPELTQD-QKHQGAIYIARKVFEALGTMFNGAHDIQYWLGDCASRI 1026
Query: 860 ASENQP-----------------------------VRWTTPLGLPVVQPYCKNERHLIRT 890
P V WTTPLGLPVVQPY + I T
Sbjct: 1027 TQSLAPEQIEQIAKEAMNPEDAKQMEDPTKKFRSTVIWTTPLGLPVVQPYRVRKARRIYT 1086
Query: 891 SLQVLAL--QREGNLVKIRKQRTAFPPNFVHSLDGSHMMMTAVACRDAGLHFAGL 943
+LQ L++ G++V RKQ AFPPNF+HSLD +HMM++A+AC AGL F+ +
Sbjct: 1087 TLQDLSIVDGSSGDVVSKRKQLQAFPPNFIHSLDATHMMLSAIACHRAGLQFSAV 1141
>gi|350636444|gb|EHA24804.1| hypothetical protein ASPNIDRAFT_48810 [Aspergillus niger ATCC 1015]
Length = 1367
Score = 448 bits (1152), Expect = e-123, Method: Compositional matrix adjust.
Identities = 290/835 (34%), Positives = 436/835 (52%), Gaps = 89/835 (10%)
Query: 166 EYREMKKRK-FNLLRRRQVKQET-----EAW-ERMVDEYKE-LEAKMIEKRLAPNLPHIK 217
EY E + R +NL R++Q++ + W + +D K L EKRL
Sbjct: 339 EYAEAESRDMYNLSRQKQLEANSIQAALNRWRQETIDRQKAGLNTTGSEKRLG------- 391
Query: 218 GLFLGWFGPLSEAIEREQKM--------QRT--KKQKAAYAPHIELLPADKVAVIVMHKM 267
+ W L IE E K+ RT ++ Y + + +DK+A + + +
Sbjct: 392 SIINQWHTDLVSRIEAELKLVEQSEAKPPRTLEDTERCEYGVFLRCVDSDKLAALTILSV 451
Query: 268 MGLVMAGHEDRCVQVVQAAVHIGMAIEQEIRIHSFLEKTKNYKRKKIIADTEEVLSKEKE 327
+ G D +++ A IG + E L+K ++ A ++ LS
Sbjct: 452 LSSFGRGGMDSGLKLASIATGIGSELHDEFLAELTLKKESAADAARLRA-VKQTLS---- 506
Query: 328 LLRKRVNSLIKSKRVMEAQKLLKNEETKPWGRDTQAKLGSRLVELLIETAYVQHPVNPAD 387
LRK+ + K ++ + L +++ W +AK+G+ L+ L E A ++ +
Sbjct: 507 -LRKQKDGRAKWHTIV--RNLEQDDPAVAWSARVKAKVGAALMSFLFEVAKAPVKIDNPE 563
Query: 388 YSPPDV--RPAFRHRFKTILKHPGQKTTKRYGVVECDPLVLEGLDRS-AKHMLIPYVPML 444
P++ +PAF+H ++ +R G + P +++ + + +L ++PML
Sbjct: 564 TKKPEISMQPAFQHAYQI-------NWGRRAGFIHLHPEIVKIVTKEPTSDLLGRHLPML 616
Query: 445 VPPKKWKGYNKGGYLFLPSYVMRTHGSRKQQEAL--KSVTGNCMKKVFEALDTLGSTKWR 502
P+ WKG + GGY S ++RT Q A ++ N ++++ + LD LG+T W
Sbjct: 617 SKPRPWKGVSDGGYHVYKSNLIRTTPGETLQPAYVKAALENNGLEQIRQGLDILGNTGWV 676
Query: 503 VNKQVLSVLESIWVSGGNIAGLVDRNDVLIPE-KPLSEDMTEVQK-WKWSVRKAKKINQE 560
+N+ V V+ W SG +A L L KP E+ E +K W +R+ +
Sbjct: 677 INEDVFKVMLEAWNSGEPVADLAPLEPELPHPPKPSPEEGYEAEKKWDNDMREIENRRAG 736
Query: 561 RHSQRCDTELKLSVARRMKDEEGFYYPHNLDFRGRAYPMHPHLNHLSSDVCRGVLEFAEG 620
HSQRC ++ VAR ++E FY PHNLDFRGRAYP+ P+LN + +D RG+L F++
Sbjct: 737 FHSQRCFQNFQMEVARAYRNET-FYLPHNLDFRGRAYPLPPYLNQMGADNARGLLLFSQA 795
Query: 621 RPLGKSGLRWLKIHLANLFSGGVEKLSHDGRLAFVENHLYEIFDSAENPINGSRWWLTAE 680
+PLG+SGLRWLK+ +ANL G +K S R F +HL ++ DSA N ++G RWWL A+
Sbjct: 796 KPLGESGLRWLKVQIANL--SGFDKASLSEREKFTMDHLDDVLDSANNGLHGRRWWLKAD 853
Query: 681 DPFQCLAACINLSEALKSSSPHSVISHLPIHQDGSCNGLQHYAALGRNTLEAAAVNLVAG 740
DP+QCLAAC L AL+ P S LP+HQDGSCNGLQHYAALG + + A VNL
Sbjct: 854 DPWQCLAACCELRNALQHPDPTQFASRLPVHQDGSCNGLQHYAALGGDKIGAQQVNLEPS 913
Query: 741 EKPADVYSEIAVRVHEIMKRDSNKDPSKHPQALLAKILIDQVDRKLVKQTVMTSVYGVTF 800
++P+DVY+ +A V E + R++ + S +AK L ++ RK+VKQTVMT+VYGVTF
Sbjct: 914 DRPSDVYTGVAEFVKEAVAREAAQGHS------VAKYLDGKITRKVVKQTVMTNVYGVTF 967
Query: 801 VGAREQIKRRL-EEKGHITDDRQLFAAACYAAKVTLTALGEIFEAARSIMGWLGDCAKVI 859
+GA +Q++++L + +T D Q A Y A+ ALG +F A I WLGDCA I
Sbjct: 968 MGAMKQVRKQLIDHYPELTQD-QKHQGAIYIARKVFEALGTMFNGAHDIQYWLGDCASRI 1026
Query: 860 ASENQP-----------------------------VRWTTPLGLPVVQPYCKNERHLIRT 890
P V WTTPLGLPVVQPY + I T
Sbjct: 1027 TQSLAPEQIEQIAKEAMNPEDAKQMEDPTKKFRSTVIWTTPLGLPVVQPYRVRKARRIYT 1086
Query: 891 SLQVLAL--QREGNLVKIRKQRTAFPPNFVHSLDGSHMMMTAVACRDAGLHFAGL 943
+LQ L++ G++V RKQ AFPPNF+HSLD +HMM++A+AC AGL F+ +
Sbjct: 1087 TLQDLSIVDGSSGDVVSKRKQLQAFPPNFIHSLDATHMMLSAIACHRAGLQFSAV 1141
>gi|317035455|ref|XP_001397108.2| DNA-dependent RNA polymerase family protein [Aspergillus niger CBS
513.88]
Length = 1640
Score = 448 bits (1152), Expect = e-123, Method: Compositional matrix adjust.
Identities = 290/835 (34%), Positives = 436/835 (52%), Gaps = 89/835 (10%)
Query: 166 EYREMKKRK-FNLLRRRQVKQET-----EAW-ERMVDEYKE-LEAKMIEKRLAPNLPHIK 217
EY E + R +NL R++Q++ + W + +D K L EKRL
Sbjct: 612 EYAEAESRDMYNLSRQKQLEANSIQAALNRWRQETIDRQKAGLNTTGSEKRLG------- 664
Query: 218 GLFLGWFGPLSEAIEREQKM--------QRT--KKQKAAYAPHIELLPADKVAVIVMHKM 267
+ W L IE E K+ RT ++ Y + + +DK+A + + +
Sbjct: 665 SIINQWHTDLVSRIEAELKLVEQSEAKPPRTLEDTERCEYGVFLRCVDSDKLAALTILSV 724
Query: 268 MGLVMAGHEDRCVQVVQAAVHIGMAIEQEIRIHSFLEKTKNYKRKKIIADTEEVLSKEKE 327
+ G D +++ A IG + E L+K ++ A ++ LS
Sbjct: 725 LSSFGRGGMDSGLKLASIATGIGSELHDEFLAELTLKKESAADAARLRA-VKQTLS---- 779
Query: 328 LLRKRVNSLIKSKRVMEAQKLLKNEETKPWGRDTQAKLGSRLVELLIETAYVQHPVNPAD 387
LRK+ + K ++ + L +++ W +AK+G+ L+ L E A ++ +
Sbjct: 780 -LRKQKDGRAKWHTIV--RNLEQDDPAVAWSARVKAKVGAALMSFLFEVAKAPVKIDNPE 836
Query: 388 YSPPDV--RPAFRHRFKTILKHPGQKTTKRYGVVECDPLVLEGLDRS-AKHMLIPYVPML 444
P++ +PAF+H ++ +R G + P +++ + + +L ++PML
Sbjct: 837 TKKPEISMQPAFQHAYQI-------NWGRRAGFIHLHPEIVKIVTKEPTSDLLGRHLPML 889
Query: 445 VPPKKWKGYNKGGYLFLPSYVMRTHGSRKQQEAL--KSVTGNCMKKVFEALDTLGSTKWR 502
P+ WKG + GGY S ++RT Q A ++ N ++++ + LD LG+T W
Sbjct: 890 SKPRPWKGVSDGGYHVYKSNLIRTTPGETLQPAYVKAALENNGLEQIRQGLDILGNTGWV 949
Query: 503 VNKQVLSVLESIWVSGGNIAGLVDRNDVLIPE-KPLSEDMTEVQK-WKWSVRKAKKINQE 560
+N+ V V+ W SG +A L L KP E+ E +K W +R+ +
Sbjct: 950 INEDVFKVMLEAWNSGEPVADLAPLEPELPHPPKPSPEEGYEAEKKWDNDMREIENRRAG 1009
Query: 561 RHSQRCDTELKLSVARRMKDEEGFYYPHNLDFRGRAYPMHPHLNHLSSDVCRGVLEFAEG 620
HSQRC ++ VAR ++E FY PHNLDFRGRAYP+ P+LN + +D RG+L F++
Sbjct: 1010 FHSQRCFQNFQMEVARAYRNET-FYLPHNLDFRGRAYPLPPYLNQMGADNARGLLLFSQA 1068
Query: 621 RPLGKSGLRWLKIHLANLFSGGVEKLSHDGRLAFVENHLYEIFDSAENPINGSRWWLTAE 680
+PLG+SGLRWLK+ +ANL G +K S R F +HL ++ DSA N ++G RWWL A+
Sbjct: 1069 KPLGESGLRWLKVQIANL--SGFDKASLSEREKFTMDHLDDVLDSANNGLHGRRWWLKAD 1126
Query: 681 DPFQCLAACINLSEALKSSSPHSVISHLPIHQDGSCNGLQHYAALGRNTLEAAAVNLVAG 740
DP+QCLAAC L AL+ P S LP+HQDGSCNGLQHYAALG + + A VNL
Sbjct: 1127 DPWQCLAACCELRNALQHPDPTQFASRLPVHQDGSCNGLQHYAALGGDKIGAQQVNLEPS 1186
Query: 741 EKPADVYSEIAVRVHEIMKRDSNKDPSKHPQALLAKILIDQVDRKLVKQTVMTSVYGVTF 800
++P+DVY+ +A V E + R++ + S +AK L ++ RK+VKQTVMT+VYGVTF
Sbjct: 1187 DRPSDVYTGVAEFVKEAVAREAAQGHS------VAKYLDGKITRKVVKQTVMTNVYGVTF 1240
Query: 801 VGAREQIKRRL-EEKGHITDDRQLFAAACYAAKVTLTALGEIFEAARSIMGWLGDCAKVI 859
+GA +Q++++L + +T D Q A Y A+ ALG +F A I WLGDCA I
Sbjct: 1241 MGAMKQVRKQLIDHYPELTQD-QKHQGAIYIARKVFEALGTMFNGAHDIQYWLGDCASRI 1299
Query: 860 ASENQP-----------------------------VRWTTPLGLPVVQPYCKNERHLIRT 890
P V WTTPLGLPVVQPY + I T
Sbjct: 1300 TQSLAPEQIEQIAKEAMNPEDAKQMEDPTKKFRSTVIWTTPLGLPVVQPYRVRKARRIYT 1359
Query: 891 SLQVLAL--QREGNLVKIRKQRTAFPPNFVHSLDGSHMMMTAVACRDAGLHFAGL 943
+LQ L++ G++V RKQ AFPPNF+HSLD +HMM++A+AC AGL F+ +
Sbjct: 1360 TLQDLSIVDGSSGDVVSKRKQLQAFPPNFIHSLDATHMMLSAIACHRAGLQFSAV 1414
>gi|358373876|dbj|GAA90472.1| mitochondrial DNA-directed RNA polymerase [Aspergillus kawachii IFO
4308]
Length = 1367
Score = 447 bits (1149), Expect = e-122, Method: Compositional matrix adjust.
Identities = 287/834 (34%), Positives = 434/834 (52%), Gaps = 87/834 (10%)
Query: 166 EYREMKKRK-FNLLRRRQVKQET-----EAW-ERMVDEYKE-LEAKMIEKRLAPNLPHIK 217
EY + + R+ +NL R++Q++ + W + +D K L EKRL
Sbjct: 339 EYTDAESREMYNLSRQKQLEANSIQAALNRWRQETIDRQKAGLNTTGSEKRLG------- 391
Query: 218 GLFLGWFGPLSEAIEREQKM--------QRT--KKQKAAYAPHIELLPADKVAVIVMHKM 267
+ W L IE E K+ RT ++ Y + + +DK+A + + +
Sbjct: 392 SIINQWHTDLVSRIEAELKLVEQSEAKPPRTLEDTERCEYGVFLRCVDSDKLAALTILSV 451
Query: 268 MGLVMAGHEDRCVQVVQAAVHIGMAIEQEIRIHSFLEKTKNYKRKKIIADTEEVLSKEKE 327
+ G D +++ A IG + E L+K ++ A ++ LS
Sbjct: 452 LSSFGRGGMDSGLKLASIATGIGSELHDEFLAELTLKKESAADAARLKA-VKQTLS---- 506
Query: 328 LLRKRVNSLIKSKRVMEAQKLLKNEETKPWGRDTQAKLGSRLVELLIETAYVQHPVNPAD 387
LRK+ + K ++ + L +++ W +AK+G+ L+ L E A ++ +
Sbjct: 507 -LRKQKDGRAKWHTIV--RNLEQDDPAVAWSARVKAKVGAALMSFLFEVAKAPVKIDNPE 563
Query: 388 YSPPDV--RPAFRHRFKTILKHPGQKTTKRYGVVECDPLVLEGLDRS-AKHMLIPYVPML 444
P++ +PAF+H ++ +R G + P +++ + + +L ++PML
Sbjct: 564 TKKPEISMQPAFQHAYQI-------NWGRRAGFIHLHPEIVKIVTKEPTSDLLGRHLPML 616
Query: 445 VPPKKWKGYNKGGYLFLPSYVMRTHGSRKQQEAL--KSVTGNCMKKVFEALDTLGSTKWR 502
P+ WKG + GGY S ++RT Q A ++ N ++++ + LD LG+T W
Sbjct: 617 SKPRPWKGVSDGGYHVYKSNLIRTTPGETLQPAYVKAALENNGLEQIRQGLDILGNTGWV 676
Query: 503 VNKQVLSVLESIWVSGGNIAGLVDRNDVLIPE-KPLSEDMTEVQK-WKWSVRKAKKINQE 560
+N+ V V+ W SG +A L L KP E+ E +K W +R+ +
Sbjct: 677 INEDVFKVMLEAWNSGEPVADLAPLEPELPHPPKPSPEEGYEAEKKWDNDMREIENRRAG 736
Query: 561 RHSQRCDTELKLSVARRMKDEEGFYYPHNLDFRGRAYPMHPHLNHLSSDVCRGVLEFAEG 620
HSQRC ++ VAR ++E FY PHNLDFRGRAYP+ P+LN + +D RG+L F++
Sbjct: 737 FHSQRCFQNFQMEVARAYRNET-FYLPHNLDFRGRAYPLPPYLNQMGADNARGLLLFSQA 795
Query: 621 RPLGKSGLRWLKIHLANLFSGGVEKLSHDGRLAFVENHLYEIFDSAENPINGSRWWLTAE 680
+PLG+SGLRWLK+ +ANL G +K S R F +HL ++ DSA N ++G RWWL A+
Sbjct: 796 KPLGESGLRWLKVQIANL--SGFDKASLSEREKFTMDHLDDVLDSANNGLHGRRWWLKAD 853
Query: 681 DPFQCLAACINLSEALKSSSPHSVISHLPIHQDGSCNGLQHYAALGRNTLEAAAVNLVAG 740
DP+QCLAAC L AL+ P S LP+HQDGSCNGLQHYAALG + + A VNL
Sbjct: 854 DPWQCLAACCELRNALQHPDPTQFASRLPVHQDGSCNGLQHYAALGGDKIGAQQVNLEPS 913
Query: 741 EKPADVYSEIAVRVHEIMKRDSNKDPSKHPQALLAKILIDQVDRKLVKQTVMTSVYGVTF 800
++P+DVY+ +A V E + R++ + S +AK L ++ RK+VKQTVMT+VYGVTF
Sbjct: 914 DRPSDVYTGVAEFVKEAVAREAAQGHS------VAKYLDGKITRKVVKQTVMTNVYGVTF 967
Query: 801 VGAREQIKRRLEEKGHITDDRQLFAAACYAAKVTLTALGEIFEAARSIMGWLGDCAKVIA 860
+GA +Q++++L + Q A Y A+ ALG +F A I WLGDCA I
Sbjct: 968 MGAMKQVRKQLIDHYPELFQDQKHQGAIYIARKVFEALGTMFNGAHDIQYWLGDCASRIT 1027
Query: 861 SENQP-----------------------------VRWTTPLGLPVVQPYCKNERHLIRTS 891
P V WTTPLGLPVVQPY + I T+
Sbjct: 1028 QSLSPEQIEQIAKEAMNPEEAKQMEDPTKKFRSTVIWTTPLGLPVVQPYRVRKARRIYTT 1087
Query: 892 LQVLAL--QREGNLVKIRKQRTAFPPNFVHSLDGSHMMMTAVACRDAGLHFAGL 943
LQ L++ G++V RKQ AFPPNF+HSLD +HMM++A+AC AGL F+ +
Sbjct: 1088 LQDLSIVDGSSGDVVSKRKQLQAFPPNFIHSLDATHMMLSAIACHRAGLQFSAV 1141
>gi|430811134|emb|CCJ31388.1| unnamed protein product, partial [Pneumocystis jirovecii]
Length = 1054
Score = 446 bits (1148), Expect = e-122, Method: Compositional matrix adjust.
Identities = 276/732 (37%), Positives = 405/732 (55%), Gaps = 80/732 (10%)
Query: 237 MQRTKKQKAAYAPHIELLPADKVAVIVMHKMMGLVMAGHEDRCVQVVQAAVHIGMAIEQE 296
+ + +Y I+LL +K++ I + +++ L G + ++ +A + +G +IE+E
Sbjct: 228 INNVNNDRLSYGVFIQLLAPEKLSTITILEVLRLHSTGGIAQGMRTARAILSVGKSIEKE 287
Query: 297 IRIHSFLEKTKNYKRKKIIADTEEVLSKEKELLRKRVNSLIKSKRVMEAQKLLK------ 350
EVL K K L K VN + Q +L+
Sbjct: 288 Y--------------------ASEVLKKNKNFLGKNVNLSQIFGNPRQFQTMLQKTQNNI 327
Query: 351 NEETKP-WGRDTQAKLGSRLVELLIETAYVQHPVNPADYSPPDVR-PAFRHRFKTILKHP 408
N E P W +AK+GS L+ +LI A + + PAF H ++
Sbjct: 328 NFEINPKWPTVVKAKIGSILISILIHVAKIDITTETEKGDTISQKAPAFYHTYQ------ 381
Query: 409 GQKTTKRYGVVECDPLVLEGL-DRSAKHMLIP-YVPMLVPPKKWKGYNKGGYLFLPSYVM 466
+ ++ GV++ + V++ L + + + P +PMLV PK W ++ GGY S VM
Sbjct: 382 -YQKGRKLGVIKLNDQVMKQLGSQPLRGNIHPRLLPMLVEPKPWISWDSGGYYLSKSTVM 440
Query: 467 RTHGSRKQQEALKSVTG-NCMKKVFEALDTLGSTKWRVNKQVLSVLESIWVSGGNIAGLV 525
R+ S +Q + LK + N +K +FE LD LGST W +N V +V+ +W SG AG+
Sbjct: 441 RSRDSIEQIQYLKIASERNNLKSIFEGLDVLGSTAWAINIPVFNVVIEVWNSGLEFAGIP 500
Query: 526 D-RNDVLIPEKPLSEDMTEVQKWKWSVRKAKKINQERHSQRCDTELKLSVARRMKDEEGF 584
+++ P +P S+D + W+ R+ + Q + S RCD KL +AR E+
Sbjct: 501 PAESNIAFPPRPTSKDPADKISWQIQCRQIARDAQNKQSIRCDINYKLEIARAFLHEK-M 559
Query: 585 YYPHNLDFRGRAYPMHPHLNHLSSDVCRGVLEFAEGRPLGKSGLRWLKIHLANLFSGGVE 644
Y+PHNLDFRGRAYP+ PH NHL +D+CRG+L F E + +G+SGLRWLKIHLAN+ G +
Sbjct: 560 YFPHNLDFRGRAYPIPPHFNHLGNDLCRGLLTFHEAKEIGESGLRWLKIHLANI--CGFD 617
Query: 645 KLSHDGRLAFVENHLYEIFDSAENPINGSRWWLTAEDPFQCLAACINLSEALKSSSPHSV 704
K S R AF +L IFDSA+NP+ GS WWL +DP+Q LAAC L+ AL+ PH
Sbjct: 618 KESFLEREAFTVENLKNIFDSADNPLKGSGWWLKFDDPWQTLAACFELTAALRFPDPHKF 677
Query: 705 ISHLPIHQDGSCNGLQHYAALGRNTLEAAAVNLVAGEKPADVYSEIAVRVHEIMKRDSNK 764
S LPIHQDG+CNGLQHYAALG + L A VNL +P DVY+ +A V+E +++D+ +
Sbjct: 678 KSRLPIHQDGTCNGLQHYAALGGDILGARQVNLEPSNRPYDVYTRVAELVNEQVQKDAKE 737
Query: 765 DPSKHPQALLAKILIDQVDRKLVKQTVMTSVYGVTFVGAREQIKRRLEEKGHITDDRQLF 824
H LA +L D++ RK+VKQTVMT+VYGVT+VGAR QI +L+ + R++
Sbjct: 738 --GNH----LAVLLKDKIARKIVKQTVMTNVYGVTYVGARNQILNQLKNLNSLP--REM- 788
Query: 825 AAACYAAKVTLTALGEIFEAARSIMGWLGDCAKVIA-----------SENQPVRWTTPLG 873
+F A I WL + AK I+ + V WT+PL
Sbjct: 789 ----------------LFVRAHKIQEWLNEAAKRISKSIDTSSYNGLNHMTSVIWTSPLN 832
Query: 874 LPVVQPYCKNERHLIRTSLQVLALQREGNL--VKIRKQRTAFPPNFVHSLDGSHMMMTAV 931
LP+VQPY K+ R I+T+LQ + + ++ V RKQ+TAFPPNF+HSLD +HM+M+A+
Sbjct: 833 LPIVQPYRKSSRKQIKTNLQSIFITDPNDVSPVDTRKQQTAFPPNFIHSLDATHMLMSAI 892
Query: 932 ACRDAGLHFAGL 943
+C++AGL FA +
Sbjct: 893 SCKNAGLTFASV 904
>gi|254583510|ref|XP_002497323.1| ZYRO0F02882p [Zygosaccharomyces rouxii]
gi|238940216|emb|CAR28390.1| ZYRO0F02882p [Zygosaccharomyces rouxii]
Length = 1311
Score = 446 bits (1148), Expect = e-122, Method: Compositional matrix adjust.
Identities = 288/830 (34%), Positives = 434/830 (52%), Gaps = 96/830 (11%)
Query: 164 LQEYREMKKRKFNLLRRRQVKQETEAWERMVDEYKELEAKMIEKRL--------APNLPH 215
L ++ + ++R L R E W+ +E K IEKRL + LP
Sbjct: 366 LDDFNQERQRA---LENRATDAAKERWKHDFEEAKARGDISIEKRLNVKLWQWYSAMLPL 422
Query: 216 IK-------GLFLGWFGPLSEAIEREQKMQRTKKQKAAYAPHIELLPADKVAVIVMHKMM 268
+K +F G+ A + + K +R + Y P++ L+ +K+ VI + +++
Sbjct: 423 VKEEVKLCSQVFDGYANEKKNASKEDAKQERAR---LDYGPYLSLVDPEKMCVITILELL 479
Query: 269 GLVMAGHEDRCVQVVQAAVHIGMAIEQEIRIHSFLEKTKNYKRKKIIADTEEVLSKEKEL 328
L G ++ +A + +G AIE E R L+ R L K
Sbjct: 480 KLNSTGGIIEGMRTARAVISVGKAIEMEFRSEQLLKSESQAFRD---------LGKNSHE 530
Query: 329 LRK---RVNSLIKSKRVMEAQKLLKNEETKPWGRDTQAKLGSRLVELLIETAYVQ-HPVN 384
L+K R S +S ++ E + + W + +AK+GS L+ +LI + V+ V+
Sbjct: 531 LKKYLQRAKSTFRSMKIEENKIM--------WPQAARAKIGSILISMLIHVSKVEVEGVD 582
Query: 385 PAD----YSPPDVRPAFRHRFKTILKHPGQKTTKRYGVVECDPLVLEGLD--RSAKHMLI 438
P Y PAF H ++ H G K GV++ ++ L+ R +
Sbjct: 583 PVTKQKVYGEA---PAFAHGYQY---HNGSK----LGVLKIHRSLVHQLNGERLVASVQP 632
Query: 439 PYVPMLVPPKKWKGYNKGGYLFLPSYVMRTHGSRKQQEALKSVT-GNCMKKVFEALDTLG 497
+PMLV P+ WK + GGY + S ++R+ S +Q LK+V+ + V++ L+ LG
Sbjct: 633 QLLPMLVKPRPWKNWKSGGYYYTQSTLIRSKDSPEQIAYLKAVSDATAINTVYDGLNVLG 692
Query: 498 STKWRVNKQVLSVLESIWVSGG---NIAGLVDRNDVLIPEKPLSEDMTEVQKWKWSVRKA 554
T W VN+ + V+ +W SG +I G V L+P P D + ++WK ++
Sbjct: 693 ETPWTVNRPLFEVMSKVWNSGKPFLDIPG-VQEKLTLLPPPPREADPSVHREWKLKNKEL 751
Query: 555 KKINQERHSQRCDTELKLSVARRMKDEEGFYYPHNLDFRGRAYPMHPHLNHLSSDVCRGV 614
S RCD+ KL +AR E+ FY+PHNLDFRGRAYP+ PH NHL +D+ RG+
Sbjct: 752 ANRFSSNRSTRCDSNYKLEIARAFLGEK-FYFPHNLDFRGRAYPLSPHFNHLGNDMSRGL 810
Query: 615 LEFAEGRPLGKSGLRWLKIHLANLFSGGVEKLSHDGRLAFVENHLYEIFDSAENPINGSR 674
L F G+ LG GL+WLK+HL+NLF G +K S R+ F + H+ +I SA++P+
Sbjct: 811 LLFWNGKRLGPQGLKWLKVHLSNLF--GFDKASLLERVQFADEHIDDIKQSAQDPLKEDA 868
Query: 675 WWLTAEDPFQCLAACINLSEALKSSSPHSVISHLPIHQDGSCNGLQHYAALGRNTLEAAA 734
WW+ AE P+Q LA C+ L++A+K +P ISH P+HQDG+CNGLQHYAALG + A
Sbjct: 869 WWMKAEKPWQALATCMELNDAMKLDNPEDFISHQPVHQDGTCNGLQHYAALGGDIDGATQ 928
Query: 735 VNLVAGEKPADVYSEIAVRVHEIMKRDSNKDPSKHPQALLAKILIDQVDRKLVKQTVMTS 794
VNLV ++P DVY+ +A V ++ + K +A IL D++ RK+VKQTVMT+
Sbjct: 929 VNLVPNDRPQDVYAHVAKLVIARLEIAAAKGDE------VAMILKDKITRKVVKQTVMTN 982
Query: 795 VYGVTFVGAREQIKRRLEEKGHITDDRQL-FAAACYAAKVTLTALGEIFEAARSIMGWLG 853
VYGVT+VGA QI ++L +I +DR+ + Y K A+ E+F+ A I WLG
Sbjct: 983 VYGVTYVGATFQIDKQL---SNIFEDRKYSLELSKYLTKHVFGAVRELFQGAHLIQDWLG 1039
Query: 854 DCAKVIASE-------------NQP-----VRWTTPLGLPVVQPYCKNERHLIRTSLQVL 895
+CAK I+ N+P V WTTPLGLP+VQPY + + + T+LQ +
Sbjct: 1040 ECAKRISKSIRLDVDEKSFKNGNKPDFMTSVIWTTPLGLPIVQPYRETSKKQVTTNLQTV 1099
Query: 896 ALQREG--NLVKIRKQRTAFPPNFVHSLDGSHMMMTAVACRDAGLHFAGL 943
+ N V R+Q+ FPPNF+HSLD SHM+++A C GL FA +
Sbjct: 1100 FISDPFGVNPVNARRQKAGFPPNFIHSLDASHMLLSAAECGRNGLDFASV 1149
>gi|154286378|ref|XP_001543984.1| conserved hypothetical protein [Ajellomyces capsulatus NAm1]
gi|150407625|gb|EDN03166.1| conserved hypothetical protein [Ajellomyces capsulatus NAm1]
Length = 1397
Score = 446 bits (1146), Expect = e-122, Method: Compositional matrix adjust.
Identities = 279/825 (33%), Positives = 420/825 (50%), Gaps = 89/825 (10%)
Query: 181 RQVKQETEAWERMVDEYKELEAKMIEKRLAPNLPH--IKGLFLGWFGPLSEAIE------ 232
RQ + E++ E + +K+ E++M+ + +P + W L I
Sbjct: 366 RQRRLESDCVESAIARWKK-ESEMLHRVGVNPIPSKPMGAFLYDWHTQLMSRINEELERI 424
Query: 233 ----REQKMQRTKKQKAAYAPHIELLPADKVAVIVMHKMMGLVMAGHEDRCVQVVQAAVH 288
++ +M Q+ +P++ + DK+A + + + D+ V++ ++
Sbjct: 425 EESEKKSRMSPADSQRVEISPYLRAIKTDKLAALTILSTFNALNKSGVDKGVKLTGLVMY 484
Query: 289 IGMAIEQEIRIHSFLEKTKNYKRKKIIADTEEVLSKEKELLRKRVNSLIKSKRVMEAQKL 348
+G A+ E E + + K L+ K V+ + ++ + +
Sbjct: 485 VGKAVYDEYLAMQLRE----------LEKKSKPTKKTSALIDKLVHKGTRKAQIQWRRII 534
Query: 349 LKNEETK---PWGRDTQAKLGSRLVELLIETAYVQHPVNPADYSPPDVRPAFRHRFKTIL 405
+ E+++ W QAK+G+ L +L+ TA V PV D + + F+ +
Sbjct: 535 ARFEQSQRPVDWSPVVQAKIGACLASMLLSTATV--PVPTKDQKTNQQKQTDQAAFRRVY 592
Query: 406 KHPGQKTTKRYGVVECDPLVLEGLDRSA-KHMLIPYVPMLVPPKKWKGYNKGGYLFLPSY 464
+ + R G V + ++E L R +L ++PM+ PP+ W GG+L PS
Sbjct: 593 Q---LERGFRVGYVHANDYIIEKLRREPLGELLAKHLPMVCPPRPWTSSRGGGFLEYPST 649
Query: 465 VMRT-HGSRKQQEALKSVTGNC-MKKVFEALDTLGSTKWRVNKQVLSVLESIWVSGGNIA 522
VMR G Q +++ + VF L LG T W++N+ VL+V+ W SG IA
Sbjct: 650 VMRVKQGDISQLSYVETAAARGDLDTVFAGLTVLGKTGWKINRGVLNVMLEAWNSGEEIA 709
Query: 523 GLVDRN-DVLIPEKPLSEDMTEVQKWKWSVRKAKKINQERHSQRCDTELKLSVARRMKDE 581
L N +++ PEKP ++D ++ + + A HSQRC +L +AR ++E
Sbjct: 710 NLAPENPNIIEPEKPDTDDRDILKDYYRAKMHATNARTGYHSQRCFQNFQLEIARAYRNE 769
Query: 582 EGFYYPHNLDFRGRAYPMHPHLNHLSSDVCRGVLEFAEGRPLGKSGLRWLKIHLANLFSG 641
FY PHNLDFRGRAYPM P+ N + +D CRG+L F++GR LG SGLRWLKIHLAN+F
Sbjct: 770 T-FYLPHNLDFRGRAYPMPPYFNQMGADHCRGLLLFSKGRELGASGLRWLKIHLANVF-- 826
Query: 642 GVEKLSHDGRLAFVENHLYEIFDSAENPINGSRWWLTAEDPFQCLAACINLSEALKSSSP 701
G +K S R F +HL +I DSA N + G RWWL A DPFQCLAACI L+ A+ P
Sbjct: 827 GFDKASFQEREQFAMDHLEDIRDSAINGLKGKRWWLDAGDPFQCLAACIELTNAMALEDP 886
Query: 702 HSVISHLPIHQDGSCNGLQHYAALGRNTLEAAAVNLVAGEKPADVYSEIAVRVHEIMKRD 761
+SHLP+HQDGSCNGLQHYAALG + + A VNL ++P+D+Y+ +A V + +++D
Sbjct: 887 TKFVSHLPVHQDGSCNGLQHYAALGGDVIGAQQVNLEPSDRPSDIYTGVAEHVKQSIQKD 946
Query: 762 SNKDPSKHPQALLAKILIDQVDRKLVKQTVMTSVYGVTFVGAREQIKRRLEEKGHITDDR 821
+ AK+L D++ RK+VKQTVMT+VYGVTF+GA Q++++L + H D
Sbjct: 947 AANGNET------AKLLEDKITRKIVKQTVMTNVYGVTFLGAIRQVRKQLVD--HYPDLL 998
Query: 822 QLFAA---ACYAAKVTLTALGEIFEAARSIMGWLGDCAKVIASENQP------------- 865
A A Y A+ ALG +F A I WLGDCA I+ P
Sbjct: 999 HSGVAGECATYIARKIFVALGSMFTGAHDIQFWLGDCANRISQSLSPEQVEALSDEGNLK 1058
Query: 866 -------------------------VRWTTPLGLPVVQPYCKNERHLIRTSLQVLALQ-- 898
V WTTPL LPV QPY + + LQ L+++
Sbjct: 1059 VVGRFQGAKKLAKNIKDPKSHFKSTVVWTTPLKLPVAQPYRDAACVKVFSDLQQLSIRNP 1118
Query: 899 REGNLVKIRKQRTAFPPNFVHSLDGSHMMMTAVACRDAGLHFAGL 943
+ ++V RKQ AFPPNFVHSLD +HM ++AV C + GL F+ +
Sbjct: 1119 QASDVVNKRKQLQAFPPNFVHSLDATHMFLSAVKCDELGLSFSAV 1163
>gi|367044972|ref|XP_003652866.1| hypothetical protein THITE_2114671 [Thielavia terrestris NRRL 8126]
gi|347000128|gb|AEO66530.1| hypothetical protein THITE_2114671 [Thielavia terrestris NRRL 8126]
Length = 1408
Score = 445 bits (1145), Expect = e-122, Method: Compositional matrix adjust.
Identities = 280/837 (33%), Positives = 425/837 (50%), Gaps = 94/837 (11%)
Query: 182 QVKQETEAWERMVDEYKELEAKMIEKRLAPNL--PHIKGLFLGWFGPLSEAIEREQ---- 235
Q K E + + ++ ++ ++ L L P + W L I EQ
Sbjct: 363 QAKLERDCIDAAINRWRSENEALMSMGLNTQLATPSLNSRLYDWHRALEARIAAEQAKVD 422
Query: 236 ------KMQRTKKQKAAYAPHIELLPADKVAVIVMHKMMGLVMAGHEDRCVQVVQAAVHI 289
K + + Y PH+ PA ++A + + + ++ D+ + V +
Sbjct: 423 KSESAPKKSQEDLDRCLYGPHLLQAPAKRLAAVTILSALSILAMHGADKGIPVSNMVQQV 482
Query: 290 GMAIEQEIRIHSFLEKTKNYKRKKIIADTEE-----VLSKEKELLRKRVNSLIKSKRVME 344
E++IR L K+ Y R K+ ++ + +E+++ N R +
Sbjct: 483 AKIAEEDIR-SQILAKSLPYARLKLKHRRQQNARQLIRQRERKIEEPPSNEPETGARTLS 541
Query: 345 AQKLLKNEETKP-------WGRDTQAKLGSRLVELLIETAYV----QHPVNPADYSPPDV 393
+ K P W +AK G+ L+ LI++A + +HP +
Sbjct: 542 VNAVSKEIGESPPDRLEARWPTVIRAKFGAVLLGALIDSAKIVVNREHPDTKQMVT--QS 599
Query: 394 RPAFRHRFKTILKHPGQKTTKRYGVVECDPLVLEGLDRSAK-HMLIPYVPMLVPPKKWKG 452
PAF H + K ++ GV++ + +++ + R + L ++PM+V P W
Sbjct: 600 MPAFIHTVQL-------KKGRKVGVIQPNRALVDLMKREPRGEALARHLPMVVEPVPWSR 652
Query: 453 YNKGGYLFLPSYVMRTHGSRKQQE--ALKSVTGNCMKKVFEALDTLGSTKWRVNKQVLSV 510
++KGG++ PS ++R K+Q A ++ M+++ LD LG T WR+N+ V V
Sbjct: 653 FDKGGFIGSPSPLIRLKNHEKEQRFYAEAAIERGDMEQMMRGLDVLGKTAWRINRPVFDV 712
Query: 511 LESIWVSGGNIAGL--VDRNDVLIPEKPLSEDMTEVQKWKWSVRKAKKINQERHSQRCDT 568
+ W SG A +D + PE ++D + + W +V+ A+ HS RC
Sbjct: 713 MLEAWNSGEEFANFPALDPKIPIPPEPDSTDDPMKRRLWVRAVKAAENEKSGLHSVRCFI 772
Query: 569 ELKLSVARRMKDEEGFYYPHNLDFRGRAYPMHPHLNHLSSDVCRGVLEFAEGRPLGKSGL 628
+L +AR +D+ FY+PHNLDFRGRAYP+ +LNH+ +D RG+L FA+G+PLGK+GL
Sbjct: 773 NFQLEIARAFRDQT-FYFPHNLDFRGRAYPLPTYLNHMGADHMRGLLIFAKGKPLGKNGL 831
Query: 629 RWLKIHLANLFSGGVEKLSHDGRLAFVENHLYEIFDSAENPINGSRWWLTAEDPFQCLAA 688
RWLK+HL+N++ G +K S R F +L IFDSA+NP+ G RWWL AEDP+QCLAA
Sbjct: 832 RWLKVHLSNVY--GFDKASLQEREDFANQNLENIFDSADNPLTGKRWWLGAEDPWQCLAA 889
Query: 689 CINLSEALKSSSPHSVISHLPIHQDGSCNGLQHYAALGRNTLEAAAVNLVAGEKPADVYS 748
C L AL S P + +SH P+HQDG+CNGLQHYAALG +T A VNL+ G++PADVY+
Sbjct: 890 CFELKAALSSPDPAAFVSHFPVHQDGTCNGLQHYAALGGDTWGAQQVNLLPGDRPADVYA 949
Query: 749 EIAVRVHEIMKRDSNKDPSKHPQALLAKILIDQVDRKLVKQTVMTSVYGVTFVGAREQIK 808
+A V E + +D + AK + +++RK+VKQTVMT+VYGVTFVGA++Q++
Sbjct: 950 AVAELVQEQVAKDVAAGNN------FAKAVDGKINRKVVKQTVMTNVYGVTFVGAKKQVQ 1003
Query: 809 RRLEEKGHITDDRQLFAAA---CYAAKVTLTALGEIFEAARSIMGWLGD-----CAKVI- 859
++L+ + ++A Y A AL +F A I WLG+ C V
Sbjct: 1004 KQLDALYPDIEKETGISSAILGSYIASKVFVALSTMFRGAHDIQNWLGEIGGRVCRAVTP 1063
Query: 860 --------ASENQPVR-----------------------WTTPLGLPVVQPYCKNERHLI 888
+S + VR WTTPL +PVVQPY K+ LI
Sbjct: 1064 EQLDRLAESSGEKVVRRKTVKTERSTEDELASQFRNTLVWTTPLRMPVVQPYRKSGTRLI 1123
Query: 889 RTSLQ--VLALQREGNLVKIRKQRTAFPPNFVHSLDGSHMMMTAVACRDAGLHFAGL 943
T LQ +L + V RKQ AFPPNF+HSLD SHMM++A+ C D GL FA +
Sbjct: 1124 STCLQDLILTSTERDDPVNRRKQLQAFPPNFIHSLDASHMMLSALECNDMGLTFAAV 1180
>gi|342888051|gb|EGU87468.1| hypothetical protein FOXB_02053 [Fusarium oxysporum Fo5176]
Length = 1450
Score = 444 bits (1143), Expect = e-122, Method: Compositional matrix adjust.
Identities = 255/645 (39%), Positives = 365/645 (56%), Gaps = 84/645 (13%)
Query: 357 WGRDTQAKLGSRLVELLIETAYV----QHPVNPADYSPPDVRPAFRHRFKTILKHPGQKT 412
W +A++GS L++ LIETA + +HP++ S ++PAF H ++ P K
Sbjct: 579 WSVQVRARVGSILLKSLIETAKINVVKEHPISRERIS--QLQPAFSH-----MQAP--KK 629
Query: 413 TKRYGVVECDPLVLEGLDRSA-KHMLIPYVPMLVPPKKWKGYNKGGYLFLPSYVMRTHGS 471
K+ G++ +P ++E L R L ++PM+ P+ W N+GG+L + ++R
Sbjct: 630 GKKVGMLTINPELVERLKREPMGDFLAKHLPMIAEPRPWTRINEGGFLVSKASLIRVKSG 689
Query: 472 RKQQE--ALKSVTGNCMKKVFEALDTLGSTKWRVNKQVLSVLESIWVSGGNIAGLVDRN- 528
+Q+ A ++ M +VF+ LD LG T WRVN VL V+ W SG IA + +
Sbjct: 690 DVEQKLYANAAIKRGDMDQVFKGLDVLGKTPWRVNNSVLDVMIEAWNSGDAIANMPELTP 749
Query: 529 DVLIPEKPLSEDMTEVQKWKWSVRKAKKINQER---HSQRCDTELKLSVARRMKDEEGFY 585
D+ IP +P + D + W +R K++ ER HSQRC L+L +AR + ++ Y
Sbjct: 750 DLQIPAEPTNSDPLLRRAW---IRNVKQVENERGALHSQRCYMNLQLEIARAFR-KQVIY 805
Query: 586 YPHNLDFRGRAYPMHPHLNHLSSDVCRGVLEFAEGRPLGKSGLRWLKIHLANLFSGGVEK 645
+PHN+D+RGRAYP+ +LNH+ +D R +L+FAEG+ LG+ GLRWLKIHLAN++ G +K
Sbjct: 806 FPHNMDYRGRAYPIPTYLNHMGADHTRALLKFAEGKRLGEQGLRWLKIHLANVY--GFDK 863
Query: 646 LSHDGRLAFVENHLYEIFDSAENPINGSRWWLTAEDPFQCLAACINLSEALKSSSPHSVI 705
S D R AF ++L I +S ENP+NGSRWWL AEDP+QCLA C L A P +
Sbjct: 864 ASFDEREAFATDNLANITESVENPLNGSRWWLKAEDPWQCLATCFELKAAYDLPDPTEFV 923
Query: 706 SHLPIHQDGSCNGLQHYAALGRNTLEAAAVNLVAGEKPADVYSEIAVRVHEIMKRDSNKD 765
S+LP+HQDG+CNGLQHYAALG +T A VNL+ G +PADVYS +A V E +++D+N
Sbjct: 924 SNLPVHQDGTCNGLQHYAALGGDTWGAQQVNLMPGSRPADVYSAVANLVKESIEKDANAG 983
Query: 766 PSKHPQALLAKILIDQVDRKLVKQTVMTSVYGVTFVGAREQIKRRLE--------EKGHI 817
+ L K + ++ RK+VKQTVMT+VYGVTF GA++Q+ ++L+ E G
Sbjct: 984 ------SQLGKNCLGKITRKVVKQTVMTNVYGVTFAGAKQQVCKQLDALYPEMFKETGIP 1037
Query: 818 TDDRQLFAAACYAAKVTLTALGEIFEAARSIMGWLGDCAKVIA--------------SEN 863
A Y A+ ALG +F A I WLG+ + +N
Sbjct: 1038 N-----LVTATYIAQHIFNALGTMFRGAHDIQYWLGEIGARVCKALTPAQLDQLQEEKDN 1092
Query: 864 QP-----------------------VRWTTPLGLPVVQPYCKNERHLIRTSLQVLALQRE 900
+P V WTTPL +PVVQPY K+ IRT LQ ++ +
Sbjct: 1093 KPAAKKTASGKNKELDELTSQFRSTVVWTTPLRMPVVQPYRKSITREIRTCLQSISYPTQ 1152
Query: 901 GNL--VKIRKQRTAFPPNFVHSLDGSHMMMTAVACRDAGLHFAGL 943
G V RKQ FPPNF+HSLD SHM+++A+ C + GL FA +
Sbjct: 1153 GQTEPVDRRKQLQGFPPNFIHSLDASHMLLSALKCDELGLKFAAV 1197
>gi|380495438|emb|CCF32395.1| DNA-dependent RNA polymerase [Colletotrichum higginsianum]
Length = 1400
Score = 444 bits (1142), Expect = e-121, Method: Compositional matrix adjust.
Identities = 272/771 (35%), Positives = 407/771 (52%), Gaps = 83/771 (10%)
Query: 229 EAIEREQKMQRTKKQKAAYAPHIEL-LPADKVAVIVMHKMMGLVMAGHEDRCVQVVQAAV 287
EA E K + Y P + L P AV ++ + V+ G DR + + A V
Sbjct: 421 EAAETAVKKSPADYDRCIYGPFLRLSTPTRLAAVTILGALSSTVITGI-DRGMPLSAAIV 479
Query: 288 HIGMAIEQEIRIHSFLEKTKNYK---RKKIIADTEEVLSKEKELLRKRVNSLIKSKRVME 344
+ E++IR + +K K R+ +++ T ++ +K + N +
Sbjct: 480 SLAKMTEEDIRDQAATQKKTAQKPKSRRMVMSPTPTNVANDKRSAEETSNHFSQLSETAV 539
Query: 345 AQKLLKNEETKPWGRDTQAKLGSRLVELLIETAYV----QHPVNPADYSPPDVRPAFRHR 400
A K PW +AK+G+ L+ LIETA + +HP A S +PAF H
Sbjct: 540 ADK--------PWPVAVRAKVGAALLSALIETAKIKVVKEHPETKALVS--QYQPAFSHV 589
Query: 401 FKTILKHPGQKTTKRYGVVECDPLVLEGLDRSAK-HMLIPYVPMLVPPKKWKGYNKGGYL 459
+ K K+ G++ + ++ + R + L ++PM+V P+ W+ ++KGG+L
Sbjct: 590 SRL-------KKGKKTGMILLNKELVNIMKREPQGDYLAKHLPMVVEPEPWQAFDKGGFL 642
Query: 460 FLPSYVMRTHGSRKQQEALK--SVTGNCMKKVFEALDTLGSTKWRVNKQVLSVLESIWVS 517
+ ++R K Q+ ++ M +VF+ LD LG T WRVN VL+V+ + W +
Sbjct: 643 ESRANLVRIKQGDKDQKLYSEAAIARGDMDQVFKGLDVLGKTPWRVNTPVLNVMLAAWNT 702
Query: 518 GGNIAGLVDRN-DVLIPEKP-LSEDMTEVQKWKWSVRKAKKINQERHSQRCDTELKLSVA 575
G +A L N ++ IP +P + D + W +VR A+ HS RC +L +A
Sbjct: 703 GEALANLPALNPNIPIPREPEATNDPLAHRAWVRAVRAAENERGGMHSVRCFMNFQLEIA 762
Query: 576 RRMKDEEGFYYPHNLDFRGRAYPMHPHLNHLSSDVCRGVLEFAEGRPLGKSGLRWLKIHL 635
R +++ FY+PHN+DFRGRAYP+ +LNH+ +D RG+L FA G+ LG+ GL+WLK+H+
Sbjct: 763 RAFRNQT-FYFPHNIDFRGRAYPLPTYLNHMGADHVRGLLRFANGKELGEEGLKWLKVHV 821
Query: 636 ANLFSGGVEKLSHDGRLAFVENHLYEIFDSAENPINGSRWWLTAEDPFQCLAACINLSEA 695
AN+F G +K S R +F ++L IFDSA NP++G+RWWL AEDP+QCLA C L A
Sbjct: 822 ANVF--GFDKASLKERESFAMDNLVNIFDSANNPLDGTRWWLKAEDPWQCLATCFELKAA 879
Query: 696 LKSSSPHSVISHLPIHQDGSCNGLQHYAALGRNTLEAAAVNLVAGEKPADVYSEIAVRVH 755
L+S P +SHLP+HQDG+CNGLQHYAALG ++ A VNL G+KPADVYS +A V
Sbjct: 880 LESPEPTKFVSHLPVHQDGTCNGLQHYAALGGDSWGARQVNLEPGDKPADVYSAVANIVK 939
Query: 756 EIMKRDSNKDPSKHPQALLAKILIDQVDRKLVKQTVMTSVYGVTFVGAREQIKRRLEEKG 815
E + +D+ ++A L D++ RK+VKQTVMT+VYGVTF GA++Q+ ++L+
Sbjct: 940 EHIAKDAESG------NVIAVALRDKITRKVVKQTVMTNVYGVTFAGAKKQVCKQLDSLY 993
Query: 816 HITDDRQLF---AAACYAAKVTLTALGEIFEAARSIMGWLGDCA---------------- 856
F + Y A + AL +F A I WLG
Sbjct: 994 PDLPKESGFDNIITSSYVATLVFKALSSMFRGAHDIQYWLGXIGXRVCRALSAEQLERIK 1053
Query: 857 ----------------------KVIASENQPVRWTTPLGLPVVQPYCKNERHLIRTSLQV 894
++A + WTTPL +P+ QPY K+ I+TSLQ
Sbjct: 1054 NDNILPSSSATAKAGDRKTTTDDILAQFRATIVWTTPLRMPISQPYRKSGTRCIKTSLQD 1113
Query: 895 LAL--QREGNLVKIRKQRTAFPPNFVHSLDGSHMMMTAVACRDAGLHFAGL 943
L+L + V RKQ AFPPNF+HSLD +HM+++A+ C + GL FA +
Sbjct: 1114 LSLIIPERSDPVHRRKQLQAFPPNFIHSLDATHMLLSALECHELGLDFAAV 1164
>gi|400595675|gb|EJP63467.1| DNA-dependent RNA polymerase [Beauveria bassiana ARSEF 2860]
Length = 1393
Score = 443 bits (1140), Expect = e-121, Method: Compositional matrix adjust.
Identities = 277/764 (36%), Positives = 403/764 (52%), Gaps = 96/764 (12%)
Query: 243 QKAAYAPHI-ELLPADKVAVIVMHKMMGLVMAGHEDRCVQVVQAAVHIGMAIEQEIRIHS 301
++ Y P I + PA AV ++ + + G D+ + + + I ++I +
Sbjct: 435 ERCIYGPFIRQADPARLAAVTILSTLNAGALLG-VDKGIAIQKIINTIAKQAHEDIELQK 493
Query: 302 FLEKTKNYKRKKIIADTEEVLSKEKELLRKRVNSLIKSKRVMEAQKLLKNEETKPWGRDT 361
++ K +R+K+ D + KE NS+ + EA K +++ +KPW
Sbjct: 494 --KQKKTTRRRKVTYDASKAKPKE-------ANSVPQITESQEATKRIEDSASKPWSIQI 544
Query: 362 QAKLGSRLVELLIETAYV----QHPVNPADYSPPDVRPAFRHRFKTILKHPGQKTTKRYG 417
+A++GS L++ LI++A V +HP S +PAF H ++ P + K+ G
Sbjct: 545 KAQVGSFLLKALIDSAKVNVITRHPTTGERVS--QYQPAFTH-----IQQP--RKGKKVG 595
Query: 418 VVECDPLVLEGLDRS-AKHMLIPYVPMLVPPKKWKGYNKGGYLFLPSYVMRTHGSRKQQE 476
++ ++E L R L ++PM+V PK WK + GG+L + V+R +Q
Sbjct: 596 MLIMHNTLVEQLKREPMGDFLAKHLPMIVEPKPWKSMHHGGFLESKTSVIRVQPGNVEQR 655
Query: 477 ALKSVTGNC--MKKVFEALDTLGSTKWRVNKQVLSVLESIWVSG---GNIAGLVDRNDVL 531
C MK+VF+ LD LG T W++N+ VL+V+ W +G N+ L + D
Sbjct: 656 LYAKAAVECGDMKQVFKGLDVLGQTAWQINRDVLNVMMEAWNTGEEIANMPALEPKFD-- 713
Query: 532 IPEKPLSEDMTEVQKWKWSVRKAKKINQER---HSQRCDTELKLSVARRMKDEEGFYYPH 588
IP +P S + K KW +R K I ER HSQRC L+L +AR +++ Y+PH
Sbjct: 714 IPAEPDSTVNPALHK-KW-IRDVKAIENERSGLHSQRCYMNLQLEIARAFRNQT-IYFPH 770
Query: 589 NLDFRGRAYPMHPHLNHLSSDVCRGVLEFAEGRPLGKSGLRWLKIHLANLFSGGVEKLSH 648
N+D+RGRAYPM +LNH+ +D R VL FA+G+PLG +GLRWLKIHLAN++ G++K S
Sbjct: 771 NVDYRGRAYPMPTYLNHMGADHARAVLSFAKGKPLGVTGLRWLKIHLANVY--GLDKASF 828
Query: 649 DGRLAFVENHLYEIFDSAENPINGSRWWLTAEDPFQCLAACINLSEALKSSSPHSVISHL 708
+ R AF I +SA NP++GSRWWL AEDP+QCLAAC L AL+ P + +SHL
Sbjct: 829 EEREAFANESASNIIESATNPLHGSRWWLKAEDPWQCLAACFELKGALQLEDPTTYVSHL 888
Query: 709 PIHQDGSCNGLQHYAALGRNTLEAAAVNLVAGEKPADVYSEIAVRVHEIMKRDSNKDPSK 768
PI QDG+CNGLQHYAALG +T A VNL G++PADVYS +A V + + +D+ +
Sbjct: 889 PIQQDGTCNGLQHYAALGGDTWGAKQVNLEPGDRPADVYSAVADLVKQAITKDAKANNK- 947
Query: 769 HPQALLAKILIDQVDRKLVKQTVMTSVYGVTFVGAREQIKRRLE----EKGHITDDRQLF 824
+L ++ RK+VKQTVMT+VYGVTF GA++Q+ ++++ + G L
Sbjct: 948 -----FGLVLDGKITRKVVKQTVMTNVYGVTFSGAKKQVCKQIDALYPDLGKQCGIPHLI 1002
Query: 825 AAACYAAKVTLTALGEIFEAARSIMGWLGDCAKVIASENQP------------------- 865
A Y A+ TAL +F A I WLG+ + P
Sbjct: 1003 -LATYIARHVFTALATMFRGAHDIQYWLGEIGGRVCRALTPAQLQHIADEYSNASADTKK 1061
Query: 866 ------------------------VRWTTPLGLPVVQPYCKNERHLIRTSLQVLALQREG 901
V WTTPL +PV QPY K IRT LQ LA
Sbjct: 1062 GKAAKAPKTRKSGFDELTKQFRSTVVWTTPLRMPVAQPYRKTTAKEIRTCLQSLAYHSSD 1121
Query: 902 NL--VKIRKQRTAFPPNFVHSLDGSHMMMTAVACRDAGLHFAGL 943
+ V RKQ FPPNF+HSLD SHM+++A+ C + GL FA +
Sbjct: 1122 STDPVNRRKQLQGFPPNFIHSLDASHMLLSALECHERGLDFAAV 1165
>gi|334326802|ref|XP_001375862.2| PREDICTED: DNA-directed RNA polymerase, mitochondrial-like
[Monodelphis domestica]
Length = 1196
Score = 442 bits (1138), Expect = e-121, Method: Compositional matrix adjust.
Identities = 237/603 (39%), Positives = 360/603 (59%), Gaps = 29/603 (4%)
Query: 353 ETKPWGRDTQAKLGSRLVELLIETAYVQHPVNPADYSPPDVRPAFRHRFKTILKHPGQKT 412
+ K W +LG++L+E+L+++ Y+ + ++P+ + + P H + + +
Sbjct: 524 QEKVWPDVLLVRLGTQLIEILVQSIYMPNSLSPSQATKRFI-PVLYHVYSFL-------S 575
Query: 413 TKRYGVVECDPLVLEGLDRSAKHML---IPYVPMLVPPKKWKGYNKGGYLFLPSYVMRT- 468
K+ G ++ P ++ +D +A L + +PML PP W N G Y+ P+ +MR
Sbjct: 576 IKQIGFIKPHPSFIQLVDEAAYTTLTFDVSVMPMLCPPIPWTSPNFGAYVLHPTKLMRCL 635
Query: 469 HGSRKQQEALKSVTGNCMKKVFEALDTLGSTKWRVNKQVLSVLESIWVSGGNIAGLVDRN 528
G+ + Q+ L+S + V +AL LG+ W+VN+ VL ++ SI+ + GN V
Sbjct: 636 DGTVQHQQLLESCPQGQLNAVLDALTQLGNCAWKVNQPVLDLVISIFNAKGNKKLDVPPP 695
Query: 529 DVLIPEKPLSE-----DMTEVQKWKWSVRKAKKINQERHSQRCDTELKLSVARRMKDEEG 583
P P E +E K + + + K +E +S R D KLS+A ++D+
Sbjct: 696 VSEAPTPPSYELSKGASSSEKAKLRREIAQCHKTAREMYSLRMDALYKLSIAHHLRDQ-I 754
Query: 584 FYYPHNLDFRGRAYPMHPHLNHLSSDVCRGVLEFAEGRPLGKSGLRWLKIHLANLFSGGV 643
F++PHN+DFRGRAYP PH NHL SD+ R +L FAEG+PLG +GL WLKIHL NL +G
Sbjct: 755 FWFPHNMDFRGRAYPCPPHFNHLGSDMTRAILLFAEGKPLGPNGLDWLKIHLINL-TGLK 813
Query: 644 EKLSHDGRLAFVENHLYEIFDSAENPINGSRWWLTAEDPFQCLAACINLSEALKSSSPHS 703
+K S RLA+ L +I DSA+NP+ G +WW+ ++P+Q LA C+ ++ A++S P +
Sbjct: 814 KKESLQARLAYANEILEDILDSADNPLTGRKWWMDVDEPWQALACCMEIANAIRSPDPTA 873
Query: 704 VISHLPIHQDGSCNGLQHYAALGRNTLEAAAVNLVAGEKPADVYSEIAVRVHEIMKRDSN 763
ISH PIHQDGSCNGLQHYAALG++ + A +VNL+ + P DVYS +A V E+ KRD+
Sbjct: 874 YISHFPIHQDGSCNGLQHYAALGQDVIGATSVNLMPCDVPQDVYSGVAQLVEELRKRDAA 933
Query: 764 KDPSKHPQALLAKILIDQVDRKLVKQTVMTSVYGVTFVGAREQIKRRLEEKGHITDDRQL 823
+ S +A++L ++RKLVKQTVMT VYGVT G R QI++RL+E + +
Sbjct: 934 EGKS------IAQVLEGFINRKLVKQTVMTVVYGVTKYGGRLQIEKRLKELDDFPKE-HI 986
Query: 824 FAAACYAAKVTLTALGEIFEAARSIMGWLGDCAKVIASENQPVRWTTPLGLPVVQPYCKN 883
+ A+ Y +++ ++LGE+F R I WL A VI+ V+W TPLGLP++QPY K
Sbjct: 987 WEASLYLSQLVFSSLGEMFSTTREIQDWLTKSAHVISKSGSAVQWVTPLGLPIIQPYHKT 1046
Query: 884 ERHLIRTSLQVLALQREGNLVK---IRKQRTAFPPNFVHSLDGSHMMMTAVACRDAGLHF 940
++ I +LQ L L ++ + KQ+ AFPPNF+HSLD +HMM+TA++C GL F
Sbjct: 1047 QKMTIPGNLQSLCLSSCSDVNQKPNTLKQKNAFPPNFIHSLDSTHMMLTALSCHRKGLTF 1106
Query: 941 AGL 943
+
Sbjct: 1107 VSV 1109
>gi|115388207|ref|XP_001211609.1| hypothetical protein ATEG_02431 [Aspergillus terreus NIH2624]
gi|114195693|gb|EAU37393.1| hypothetical protein ATEG_02431 [Aspergillus terreus NIH2624]
Length = 1382
Score = 442 bits (1136), Expect = e-121, Method: Compositional matrix adjust.
Identities = 277/825 (33%), Positives = 426/825 (51%), Gaps = 83/825 (10%)
Query: 175 FNLLRRRQVKQET--EAWERMVDEYKELEAKMIEKRLAPNLPHIKGLFLGWFGPLSEAIE 232
+N LR++Q++ + + ER E+ + + I+ + + W L I+
Sbjct: 348 YNQLRQQQLEANSIRSSLERWRQEFNDRQKSGIDATAGGK--RLGSIMNQWHSDLVSRIQ 405
Query: 233 REQKM--------QRT--KKQKAAYAPHIELLPADKVAVIVMHKMMGLVMAGHEDRCVQV 282
E K+ RT +K++ Y + L +++A + + ++ G ++ ++V
Sbjct: 406 EELKLIEEAESNPVRTFEQKERCEYGVFLRSLDPERLAALTILAVISTFSRGGMEKSIKV 465
Query: 283 VQAAVHIGMAIEQEIRIHSFLEKTKNYKRKKIIADTEEVLSKEKELLRKRVNSLIKSKRV 342
IG ++ E+ L+K +++ A E + ++++ R R ++++S
Sbjct: 466 SAIVTTIGKELQDELIAEKTLQKQSGADARRVKAVKEMLAGRKQKDGRARWQNIVRS--- 522
Query: 343 MEAQKLLKNEETKPWGRDTQAKLGSRLVELLIETAYVQHPVNPADYSPPDV--RPAFRHR 400
L + + T W +AK+G+ L+ LL E + + +V +PAF+H
Sbjct: 523 -----LEQEDPTVVWPPRVKAKIGAVLMSLLFEVGKAPVAMQHSQSKKQEVTMQPAFQHS 577
Query: 401 FKTILKHPGQKTTKRYGVVECDPLVLEGLDRS-AKHMLIPYVPMLVPPKKWKGYNKGGYL 459
++ G G + P +++ + + +L ++PM+ PK W G GGY
Sbjct: 578 YQISWGRKG-------GYIHLHPEIVKIITKEPTADLLGRHLPMICKPKPWGGMKDGGYF 630
Query: 460 FLPSYVMR-THGSRKQQEALKSVTGN-CMKKVFEALDTLGSTKWRVNKQVLSVLESIWVS 517
+ ++R T G Q +K+ N +K++ E LD LGST W +N+ V V+ W
Sbjct: 631 LYQNNIVRSTPGETLQPSYMKAALQNDGLKQIREGLDILGSTGWTINRDVFDVMLEAWNL 690
Query: 518 GGNIAGLVD-RNDVLIPEKPLSEDMTEVQK-WKWSVRKAKKINQERHSQRCDTELKLSVA 575
G IA L D+ P +P E+ E +K W ++R + HS RC ++ VA
Sbjct: 691 GEPIANLSPLEPDLPHPPRPAPEEGYEAEKKWDNAMRDIENRRAGMHSNRCFQNFQMEVA 750
Query: 576 RRMKDEEGFYYPHNLDFRGRAYPMHPHLNHLSSDVCRGVLEFAEGRPLGKSGLRWLKIHL 635
R ++E FY PHN+DFRGRAYP+ P+LN + +D RG+L F+E +PLG +GL+WLKI +
Sbjct: 751 RAYRNET-FYLPHNMDFRGRAYPLPPYLNQMGADNARGLLLFSEAKPLGTTGLKWLKIQI 809
Query: 636 ANLFSGGVEKLSHDGRLAFVENHLYEIFDSAENPINGSRWWLTAEDPFQCLAACINLSEA 695
ANL G +K S R F ++HL +I DSA ++G RWWL AEDP+QCLAAC L A
Sbjct: 810 ANL--AGFDKASLSEREKFADDHLDDILDSANKGLHGRRWWLNAEDPWQCLAACCELRNA 867
Query: 696 LKSSSPHSVISHLPIHQDGSCNGLQHYAALGRNTLEAAAVNLVAGEKPADVYSEIAVRVH 755
L+ +P S LPIHQDGSCNGLQHYAALG +++ A VNL ++P+DVY+ +A V
Sbjct: 868 LQYQNPAEYPSRLPIHQDGSCNGLQHYAALGGDSIGAQQVNLEPSDRPSDVYTGVAEFVK 927
Query: 756 EIMKRDSNK-DPSKHPQALLAKILIDQVDRKLVKQTVMTSVYGVTFVGAREQIKRRLEEK 814
+ R++ + DP +AK L ++ RK+VKQTVMT+VYGVTF+GA +Q++++L +
Sbjct: 928 AAVAREAARGDP-------VAKFLDGRITRKIVKQTVMTNVYGVTFMGAMKQVRKQLVDH 980
Query: 815 GHITDDRQLFAAACYAAKVTLTALGEIFEAARSIMGWLGDCAKVIASENQP--------- 865
Q A Y A+ ALG +F A I WLGDCA I P
Sbjct: 981 YPDLSAEQKQTGALYIARKIFEALGTMFNGAHEIQYWLGDCASRITQSLSPEQIEEVAKE 1040
Query: 866 -------------------------VRWTTPLGLPVVQPYCKNERHLIRTSLQVLAL--Q 898
V WTTPLG+PVVQPY + I T+LQ L++
Sbjct: 1041 VLTPTKSTTGSKGKLKDPSEKFRSTVIWTTPLGMPVVQPYRTRKARRIHTTLQDLSIVDM 1100
Query: 899 REGNLVKIRKQRTAFPPNFVHSLDGSHMMMTAVACRDAGLHFAGL 943
+ V RKQ AFPPNF+HSLD +HM+M+A AC AGL F+ +
Sbjct: 1101 SSEDPVSKRKQLQAFPPNFIHSLDATHMIMSATACHRAGLSFSAV 1145
>gi|367034009|ref|XP_003666287.1| hypothetical protein MYCTH_2310823 [Myceliophthora thermophila ATCC
42464]
gi|347013559|gb|AEO61042.1| hypothetical protein MYCTH_2310823 [Myceliophthora thermophila ATCC
42464]
Length = 1402
Score = 441 bits (1135), Expect = e-121, Method: Compositional matrix adjust.
Identities = 283/850 (33%), Positives = 431/850 (50%), Gaps = 115/850 (13%)
Query: 179 RRRQVKQETEAWERMVDEYKELEAKMIEKRLAPNL--PHIKGLFLGWFGPLSEAIEREQ- 235
R Q + E + + + ++E +++ L L P + W L + +EQ
Sbjct: 360 REVQARLERDCVDAAIARWREENEQLMSMGLNTQLSTPSLNSKLYDWHQALEARLIQEQA 419
Query: 236 ---------KMQRTKKQKAAYAPHIELLPADKVA-VIVMHKMMGLVMAGHEDRCVQVVQA 285
+ R ++ Y PH+ PA+++A V ++ + L M G D+ + V
Sbjct: 420 KVEASLSAPRKSREDMERCVYGPHLLQSPANRLAAVAILSALSSLAMHG-ADKGIPVSNM 478
Query: 286 AVHIGMAIEQEIRIHSF---LEKTKNYKRKKIIADTEEVLSKEKELLR----------KR 332
+ E++IR + L K+K K+K ++L+R K
Sbjct: 479 VQQLAKIAEEDIRAQAIAKNLPKSKPRKQKSA-----------RQLMRLHDAAPTATTKS 527
Query: 333 VNSLIKSKRVMEAQKLLKNEETKPWGRDTQAKLGSRLVELLIETAYV----QHPVNPADY 388
+ S A +E W +AK G+ ++ L++TA + +HP
Sbjct: 528 SPTATASPASQPATNSEPSEFASRWPIAIKAKFGAVILGALMDTAKIVVEREHPETKEKV 587
Query: 389 SPPDVRPAFRHRFKTILKHPGQKTTKRYGVVECDPLVLEGLDRSAK-HMLIPYVPMLVPP 447
+ V+PAF H + K +R GV++ + ++E + R + L ++PM+V P
Sbjct: 588 T--QVQPAFTHTVQL-------KKGRRVGVIQPNRSLIELMKREPRGEALARHLPMVVEP 638
Query: 448 KKWKGYNKGGYLFLPSYVMRTHGSRKQQE--ALKSVTGNCMKKVFEALDTLGSTKWRVNK 505
+ W ++KGG++ PS ++R K Q A ++ M+++ LD LG T W++N+
Sbjct: 639 EPWSKFDKGGFITSPSPLVRLKNHEKDQRIYAEAAIERGDMEQMMRGLDVLGKTAWKINR 698
Query: 506 QVLSVLESIWVSGGNIAGL--VDRNDVLIPEKPLSEDMTEVQKWKWSVRKAKKINQERHS 563
V V+ W +G A L +D + PE ++D + + W +V+ A+ HS
Sbjct: 699 PVFDVMLEAWNTGEEFANLPALDPKIPIPPEPDSTDDPMKRRLWLRAVKAAENEKSGLHS 758
Query: 564 QRCDTELKLSVARRMKDEEGFYYPHNLDFRGRAYPMHPHLNHLSSDVCRGVLEFAEGRPL 623
RC +L +AR +D+ FY+PHN+DFRGRAYP+ +LNH+ +D RG+L FA+GRPL
Sbjct: 759 VRCFMNFQLEIARAFRDQT-FYFPHNIDFRGRAYPIPTYLNHMGADNMRGLLLFAKGRPL 817
Query: 624 GKSGLRWLKIHLANLFSGGVEKLSHDGRLAFVENHLYEIFDSAENPINGSRWWLTAEDPF 683
GKSGL WLK+HL+N++ G +K S R F + +L IFDSA+NP+ G RWWL AEDP+
Sbjct: 818 GKSGLAWLKVHLSNVY--GFDKASLKEREEFADRNLENIFDSADNPLTGKRWWLQAEDPW 875
Query: 684 QCLAACINLSEALKSSSPHSVISHLPIHQDGSCNGLQHYAALGRNTLEAAAVNLVAGEKP 743
QCLA C L AL S P + +SHLP+HQDG+CNGLQHYAALG +T A VNL+ G++P
Sbjct: 876 QCLATCFELKAALSSPDPTAYVSHLPVHQDGTCNGLQHYAALGGDTWGAQQVNLLPGDRP 935
Query: 744 ADVYSEIAVRVHEIMKRDSNKDPSKHPQALLAKILIDQVDRKLVKQTVMTSVYGVTFVGA 803
ADVYS +A E++++ +D + + A+ + ++ RK+VKQTVMT+VYGVTFVGA
Sbjct: 936 ADVYSAVA----ELVQKQVTEDLANGNE--FAQAMDGKITRKVVKQTVMTNVYGVTFVGA 989
Query: 804 REQIKRRLEE-KGHITDDRQLFAA--ACYAAKVTLTALGEIFEAARSIMGWLGDCAKVIA 860
++Q++++L+ I + L + A Y A AL +F A I WLG+ +
Sbjct: 990 KKQVQKQLDSLYPDIEKETGLSSGVLASYIAAKVFMALSTMFRGAHDIQNWLGEIGGRVC 1049
Query: 861 SENQP---------------------------------------------VRWTTPLGLP 875
P + WTTPL +P
Sbjct: 1050 RAVTPEQLDRIAEASGEKVGSGEESKSTKKKAKASSKAGDEDLASHFRNTLVWTTPLRMP 1109
Query: 876 VVQPYCKNERHLIRTSLQVLALQR--EGNLVKIRKQRTAFPPNFVHSLDGSHMMMTAVAC 933
VVQPY K+ LI T LQ L L + V RKQ AFPPNF+HSLD SHMM++A+ C
Sbjct: 1110 VVQPYRKSGTRLISTCLQDLVLTNVDRDDPVNRRKQLQAFPPNFIHSLDASHMMLSALEC 1169
Query: 934 RDAGLHFAGL 943
GL FA +
Sbjct: 1170 DAIGLTFAAV 1179
>gi|406603686|emb|CCH44839.1| DNA-directed RNA polymerase, mitochondrial [Wickerhamomyces ciferrii]
Length = 1332
Score = 441 bits (1135), Expect = e-121, Method: Compositional matrix adjust.
Identities = 294/869 (33%), Positives = 455/869 (52%), Gaps = 112/869 (12%)
Query: 136 LEPRRRIFVQDPPWFSSIFLKGLYKRIKL--QEYREMKKRKFNL-----LRRRQVKQETE 188
LE + F D ++ F +YK + L ++ E +FN+ L + ++ E
Sbjct: 320 LEEKLEFFTNDSETQANFF--EVYKSLPLDKRDLFEEALNEFNVERQTALENKSIEAAQE 377
Query: 189 AWERMVDEYKELEAKMIEKRLAPNLPHIKGLFLGWFG---PL-SEAIEREQKMQ----RT 240
W+ +E K+ + K L L GWF PL + IER + + +T
Sbjct: 378 KWKHEYEEIKKRGDLGMSKSLNARL-------WGWFEQMMPLVRDEIERCKNVDDIQIKT 430
Query: 241 KKQKA--------AYAPHIELLPADKVAVIVMHKMMGLVMAGHEDRCVQVVQAAVHIGMA 292
K +A YAP++ LL KV VI + +M+ G ++ +A + + A
Sbjct: 431 LKNEAFAQHSERKKYAPYLRLLDPKKVTVITILEMLKNNSTGGISEGMRTARAVLSVSKA 490
Query: 293 IEQEIRIHSFLEKTKNYKRKKIIADTEEVLSKEKELLRKRVNSLIKSKRVMEAQKL---- 348
+E E R +E++L+ EK ++ NS + + + ++ +
Sbjct: 491 LELEFR-------------------SEQILNTEKNFVKNFDNSKLSNPKNLKKYSMSLSN 531
Query: 349 LKNEETKP----WGRDTQAKLGSRLVELLIETAYVQHPVNPADYSPPDV----RPAFRHR 400
KN+ W +D + K+GS L+ +L+ A V+ V+ D S + PAF H
Sbjct: 532 FKNDVISDMKVYWPQDIKVKIGSVLISILMHVAKVE--VSGVDPSTKQLVRGEAPAFYHS 589
Query: 401 FKTILKHPGQKTTKRYGVVECDPLVLEGL--DRSAKHMLIPYVPMLVPPKKWKGYNKGGY 458
F+ H G K G+++ ++ L D+ + +PML+ P+ W +N G Y
Sbjct: 590 FQY---HNGAKI----GILKIHKVLSSQLSADKLVGAVQPQSLPMLIQPRPWTSWNNGAY 642
Query: 459 LFLPSYVMRTHGSRKQQEALKSVTGNCMKKVFEALDTLGSTKWRVNKQVLSVLESIWVSG 518
+ + ++R S +Q +K+ + + + KV++ L+ LG+T W VN++V V+ IW +G
Sbjct: 643 YYSQNQIIRLRDSPEQLAYIKA-SSDKLDKVYDGLNVLGNTAWTVNERVFKVMSKIWNTG 701
Query: 519 GNIAGLVDRNDVL-IPE-KPLSEDMTEVQKWKWSVRKAKKINQERHSQRCDTELKLSVAR 576
+ ++ L +PE P S D + + +WK V+ + S RCD KL +AR
Sbjct: 702 DEFLDIPKAHESLELPEVPPRSSDPSVLNEWKIKVKALQDKYATDRSTRCDANYKLEIAR 761
Query: 577 RMKDEEGFYYPHNLDFRGRAYPMHPHLNHLSSDVCRGVLEFAEGRPLGKSGLRWLKIHLA 636
E+ FY+PHNLDFRGRAYP+ P+ NH+ SD+ RG+L F +G+ +G+ GLRWLKIHLA
Sbjct: 762 AFLGEK-FYFPHNLDFRGRAYPISPNFNHMGSDLSRGLLLFWKGKEIGEEGLRWLKIHLA 820
Query: 637 NLFSGGVEKLSHDGRLAFVENHLYEIFDSAENPINGSRWWLTAEDPFQCLAACINLSEAL 696
NLF G++K + R AFV +++ + +AE+P+ WW A+ P+Q LA I+L++AL
Sbjct: 821 NLF--GIDKAPLNEREAFVNDNIELVKRAAEDPMANQEWWTKADKPWQALATIIDLADAL 878
Query: 697 KSSSPHSVISHLPIHQDGSCNGLQHYAALGRNTLEAAAVNLVAGEKPADVYSEIAVRVH- 755
K P ISH P+HQDG+CNGLQHYAALG + A VNL +KP DVY+ +A V
Sbjct: 879 KLPDPTKHISHQPVHQDGTCNGLQHYAALGGDVEGATQVNLAPSDKPQDVYTHVAKLVRA 938
Query: 756 EIMKRDSNKDPSKHPQALLAKILIDQVDRKLVKQTVMTSVYGVTFVGAREQIKRRLEEKG 815
++ + +N D + A++L D + RK+VKQTVMT+VYGVT VGA QI ++L+
Sbjct: 939 KLEEAAANGDEN-------ARMLKDNIKRKVVKQTVMTNVYGVTQVGATNQIHKQLQ--- 988
Query: 816 HITDDRQLFAAACYAAKVTLTALGEIFEAARSIMGWLGDCAKVIA----------SENQP 865
++ + Q + + Y KV ++ E+FE A I WL CAK+I+ E P
Sbjct: 989 NVFSEDQSYKLSVYLTKVVFASMRELFEGAHLIQDWLAICAKMISKSVRIDIDSYEEMGP 1048
Query: 866 ---------VRWTTPLGLPVVQPYCKNERHLIRTSLQVLALQREGNL--VKIRKQRTAFP 914
V WTTPL LP+VQPY + I+T+LQ + +Q L V RKQ AFP
Sbjct: 1049 KKKPSFMASVIWTTPLDLPIVQPYRAIVKKQIQTNLQTVFIQDPYELHQVDARKQMAAFP 1108
Query: 915 PNFVHSLDGSHMMMTAVACRDAGLHFAGL 943
PNF+HSLD SHM+++A +C GL FA +
Sbjct: 1109 PNFIHSLDASHMLLSASSCSKKGLEFAAV 1137
>gi|242818630|ref|XP_002487156.1| mitochondrial DNA-directed RNA polymerase, putative [Talaromyces
stipitatus ATCC 10500]
gi|218713621|gb|EED13045.1| mitochondrial DNA-directed RNA polymerase, putative [Talaromyces
stipitatus ATCC 10500]
Length = 1377
Score = 441 bits (1135), Expect = e-121, Method: Compositional matrix adjust.
Identities = 289/841 (34%), Positives = 445/841 (52%), Gaps = 97/841 (11%)
Query: 162 IKLQEYREMKKRKFNLLRRRQVKQETEAWERMVDEYKELEAKMIEKRLAPNLPHIKGLFL 221
I +E RE+++++ L + V + W+R E + + A I+ I L
Sbjct: 333 IDSEEVRELQRKRQAELEGKAVDTAKKRWQR---EMETMRAAGIDTSGGGKT--IASLLE 387
Query: 222 GWFGPLSEAIEREQKM----QRTKKQKA-----AYAPHIELLPADKVAVI-VMHKMMGLV 271
W+ + ++ E K+ +RT K A +A + +LP D +A I VMH +
Sbjct: 388 QWYNDMVLKLKEEIKIGRPSERTSKLSADEKNREHADFLRILPPDTLAAITVMHVIQLFA 447
Query: 272 MAGHEDRCVQVVQAAVHIGMAIEQEIRIHSFLEKT-KNYKRKKIIADTEEVLSKEKELLR 330
AG E + ++V +G ++ E S + K+ ++ + K I E R
Sbjct: 448 RAGVE-KGLKVPTIMTSLGQEVQNEFIAQSMIAKSERDSRHHKFIKQVVEN--------R 498
Query: 331 KRVNSLIKSKRVM-EAQKLLKNEETK-PWGRDTQAKLGSRLVELLIETAYVQHPVNPADY 388
K+ IK K+++ E + ++ E++ W D AK+G L+ +L + A + PV D
Sbjct: 499 KKKAGRIKFKKLLTEMKSNSRDVESEFTWPVDVHAKVGGALLSVLFDCA--KAPVIQED- 555
Query: 389 SPPDVR-------PAFRHRFKTILKHPGQKTTKRYGVVECDPLVLEGLDRSAKHML-IPY 440
PD + AF+H ++ +++G++ P V L R A + + +
Sbjct: 556 --PDTKKRIMVMESAFQHSYEI-------NRGRKFGLLHAHPEVTRRLIREAPNAVQARH 606
Query: 441 VPMLVPPKKWKGYNKGGYLFLPSYVMRTHGSRKQQEAL--KSVTGNCMKKVFEALDTLGS 498
+PML P+ W ++KGG+L S +MRT Q + K++ N + +V LD LG
Sbjct: 607 MPMLSEPQPWTAFDKGGFLAQRSPIMRTTPGDTLQHSYMKKALENNGLPEVRAGLDILGK 666
Query: 499 TKWRVNKQVLSVLESIWVSGGNIAGLVDRN-DVLIPEKPLSEDMTEVQKWKWSVRKAKKI 557
T W +N V V+ W +G A + + + +PEKP ++ ++ + +R+ + +
Sbjct: 667 TAWTINNDVFDVMLEAWNTGEAFAKIPPLDPQIPMPEKPADDNPEAIKVYNNKLREVENL 726
Query: 558 NQERHSQRCDTELKLSVARRMKDEEGFYYPHNLDFRGRAYPMHPHLNHLSSDVCRGVLEF 617
HSQRC ++ +AR K++ FY PHN+DFRGRAYP+ +LN +S+D R +L F
Sbjct: 727 RSGLHSQRCFINFQMEIARAYKNQT-FYLPHNMDFRGRAYPLPAYLNQMSADNARSLLLF 785
Query: 618 AEGRPLGKSGLRWLKIHLANLFSGGVEKLSHDGRLAFVENHLYEIFDSAENPINGSRWWL 677
+G+PLG++GLRWLKIHL+N++ G +K S R F HL ++ DSA ++G +W+L
Sbjct: 786 KKGKPLGEAGLRWLKIHLSNVY--GFDKASLKEREEFTMQHLEDVLDSANKGLHGRKWFL 843
Query: 678 TAEDPFQCLAACINLSEALKSSSPHSVISHLPIHQDGSCNGLQHYAALGRNTLEAAAVNL 737
AEDP+QCLAAC L ALK +P +S LP+HQDGSCNGLQHYAALG + A VNL
Sbjct: 844 EAEDPWQCLAACCELRNALKLENPTEYVSRLPVHQDGSCNGLQHYAALGGDMEGAQHVNL 903
Query: 738 VAGEKPADVYSEIAVRVHEIMKRDSNKDPSKHPQALLAKILIDQVDRKLVKQTVMTSVYG 797
G++P D+Y+ ++ V E ++RD+ + H +AK+L+ ++ RK+VKQTVMT+VYG
Sbjct: 904 EPGDRPKDIYTGVSDFVTEKVERDA---AAGHE---IAKLLVGKIKRKIVKQTVMTNVYG 957
Query: 798 VTFVGAREQIKRRLEEKGHITDDRQLFAAACYAAKVTLTALGEIFEAARSIMGWLGDCAK 857
VTFVGA Q++R++ H + + Y A AL IF A SI WLGDCA
Sbjct: 958 VTFVGAIRQVRRQI--AAHYPGLEETPGISKYIASAIFEALSTIFSGAHSIQYWLGDCAT 1015
Query: 858 VIAS-------------------------ENQPVR-------WTTPLGLPVVQPYCKNER 885
I+ E P+R WTTPLGLPVVQPY +
Sbjct: 1016 RISQAISPDQLDALAKNVLQDNTSAKEDVEMDPLRMFRSTIIWTTPLGLPVVQPYRTVKC 1075
Query: 886 HLIRTSLQVLALQRE---GNLVKIRKQRTAFPPNFVHSLDGSHMMMTAVACRDAGLHFAG 942
+ T+LQ L + ++ GN+ K RKQ AFPPNF+HSLD +HMM++A+ C GL F+
Sbjct: 1076 QRVYTTLQTLNIIQDSTSGNVSK-RKQLQAFPPNFIHSLDATHMMLSAIECYRQGLVFSA 1134
Query: 943 L 943
+
Sbjct: 1135 V 1135
>gi|322708298|gb|EFY99875.1| DNA-directed RNA polymerase [Metarhizium anisopliae ARSEF 23]
Length = 1326
Score = 441 bits (1134), Expect = e-120, Method: Compositional matrix adjust.
Identities = 259/652 (39%), Positives = 370/652 (56%), Gaps = 77/652 (11%)
Query: 344 EAQKLLKNEETKPWGRDTQAKLGSRLVELLIETAYV----QHPVNPADYSPPDVRPAFRH 399
E K L+N +PW +A++GS L++ LI+ A+V +HP S +PAF H
Sbjct: 471 ETAKELENATREPWSISIRAQVGSFLLKTLIDNAFVKVTMEHPTTKQTIS--QKQPAFTH 528
Query: 400 RFKTILKHPGQKTTKRYGVVECDPLVLEGL------DRSAKHMLIPYVPMLVPPKKWKGY 453
++ P + K+ GV+ + +++ L D AKH+ PM+V PK W+
Sbjct: 529 -----MQQP--RRGKKVGVLHYNSNLVQQLKKEPIGDYIAKHL-----PMIVEPKPWRQL 576
Query: 454 NKGGYLFLPSYVMRTHGSRKQQEALKSV---TGNCMKKVFEALDTLGSTKWRVNKQVLSV 510
N+GG+L + +R +Q+ TG+ M +VF+ LD LG T WR+NK VL+V
Sbjct: 577 NEGGFLDSRTTFVRVKSGDVEQKLYTEAAIKTGD-MAQVFKGLDVLGKTAWRINKNVLNV 635
Query: 511 LESIWVSGGNIAGLVDRN-DVLIPEKP-LSEDMTEVQKWKWSVRKAKKINQERHSQRCDT 568
+ W SG IA + N + IPE+P S D + W +V+ + HSQRC
Sbjct: 636 MMEAWNSGEEIANMPPLNPEFHIPEEPDSSADPLLRRSWMQAVKAIENERSGMHSQRCFM 695
Query: 569 ELKLSVARRMKDEEGFYYPHNLDFRGRAYPMHPHLNHLSSDVCRGVLEFAEGRPLGKSGL 628
L+L +AR +++ Y+PHN+D+RGRAYPM +LNH+ +D R VL+FA G+ LG+ GL
Sbjct: 696 NLQLEIARAFRNQT-MYFPHNIDYRGRAYPMPTYLNHMGADHARAVLKFARGKELGERGL 754
Query: 629 RWLKIHLANLFSGGVEKLSHDGRLAFVENHLYEIFDSAENPINGSRWWLTAEDPFQCLAA 688
RWLKIHLANL+ G++K S D R AF +++ I DSA NP+NGSRWWL AED +QCLAA
Sbjct: 755 RWLKIHLANLY--GLDKSSFDEREAFTNDNIPNIIDSASNPLNGSRWWLKAEDAWQCLAA 812
Query: 689 CINLSEALKSSSPHSVISHLPIHQDGSCNGLQHYAALGRNTLEAAAVNLVAGEKPADVYS 748
C L AL+ P +S LP+HQDG+CNGLQHYAALG +T A VNL GE+PADVYS
Sbjct: 813 CFELKAALELPDPTKFVSQLPVHQDGTCNGLQHYAALGGDTWGAKQVNLEPGERPADVYS 872
Query: 749 EIAVRVHEIMKRDSNKDPSKHPQALLAKILIDQVDRKLVKQTVMTSVYGVTFVGAREQIK 808
+A V + + +D+ + A +L ++ RK+VKQTVMT+VYGVTF GA++Q+
Sbjct: 873 AVADLVKQAIDKDAEAENE------FALVLQGKITRKVVKQTVMTNVYGVTFAGAKKQVC 926
Query: 809 RRLE----EKGHITDDRQLFAAACYAAKVTLTALGEIFEAARSIMGWLGD-----CAKVI 859
++++ + G L + Y A++ AL +F A I WLG+ C +
Sbjct: 927 KQIDALYPDLGKECGIPNLV-LSTYIARLIFNALATMFRGAHDIQYWLGEIGGRVCRALT 985
Query: 860 ASENQPVR--------------------------WTTPLGLPVVQPYCKNERHLIRTSLQ 893
++ + +R WTTPL +PVVQPY K+ IRT LQ
Sbjct: 986 PAQLKEIRDSYEKEGRKKKDELDDLMKQFRSSVVWTTPLRMPVVQPYRKSTAREIRTCLQ 1045
Query: 894 --VLALQREGNLVKIRKQRTAFPPNFVHSLDGSHMMMTAVACRDAGLHFAGL 943
V + + + V RKQ FPPNF+HSLD SHM+++A+ C + GL FA +
Sbjct: 1046 SVVYPVNEQTDPVNKRKQLQGFPPNFIHSLDASHMLLSALQCHEQGLDFAAV 1097
>gi|219127813|ref|XP_002184122.1| polymerase dna-directed RNA polymerase [Phaeodactylum tricornutum
CCAP 1055/1]
gi|217404353|gb|EEC44300.1| polymerase dna-directed RNA polymerase [Phaeodactylum tricornutum
CCAP 1055/1]
Length = 576
Score = 440 bits (1132), Expect = e-120, Method: Compositional matrix adjust.
Identities = 219/506 (43%), Positives = 325/506 (64%), Gaps = 21/506 (4%)
Query: 442 PMLVPPKKWKGYNKGGYLFLPSYVMRTHGSRKQQEALKSVTGNCMKKVFEALDTLGSTKW 501
PM+VPPK W ++GGY L + ++R HG Q+E L++V + VF+ L+ LG W
Sbjct: 19 PMIVPPKPWSRPDEGGYKMLRTELLRYHGCNMQKEVLQNVD---LSIVFDGLNALGRVPW 75
Query: 502 RVNKQVLSVLESIWVSGGNIAGLVDRNDVLIPEKPLSEDMTEVQKWKWSVRKAKKINQER 561
R+N++VL+V + W + + + ++D +PE+PL + Q+ W + +
Sbjct: 76 RINQRVLTVAQRCWDNNIPLGDIPSKDDNPLPEEPLH---PKRQEQFWEPETPGYESYDL 132
Query: 562 HSQRCDTELKLSVARRMKDEEGFYYPHNLDFRGRAYPMHPHLNHLSSDVCRGVLEFAEGR 621
S RC LKL A + K+ E ++P+N+DFRGRAYP+ PHL+++ SD+CRGVL+FAE +
Sbjct: 133 RSLRCSAMLKLDQAEKFKEFEEIFFPYNMDFRGRAYPVPPHLSNVGSDLCRGVLKFAEAK 192
Query: 622 PLGKSGLRWLKIHLANLFSGGVEKLSHDGRLAFVENHLYEIFDSAENPINGSRWWLTAED 681
PLG GL WLK+HLAN G +K+S D R+ FV+++L ++ SAE+P G RWW++ ED
Sbjct: 193 PLGPRGLYWLKVHLANF--AGKDKMSFDDRVKFVDDNLEQVRLSAEDPFAGERWWMSLED 250
Query: 682 PFQCLAACINLSEALKSSSPHSVISHLPIHQDGSCNGLQHYAALGRNTLEAAAVNLVAGE 741
PFQ LA C+ + +A+ +P S + LP+H DGSCNGLQHYAALGR+++ AVNL A +
Sbjct: 251 PFQGLATCLEIIDAIDCGNPESFLCSLPVHMDGSCNGLQHYAALGRDSVGGKAVNLCAYD 310
Query: 742 KPADVYSEIAVRVHEIMKRDSNKDPSKHPQALLAKILIDQVDRKLVKQTVMTSVYGVTFV 801
+P DVY + +HE+++R K+ S + A L LI DR +VK+TVMTSVYGVT++
Sbjct: 311 EPQDVYVGV---MHEVVRR---KELSYNRAAKLVNGLI---DRGVVKRTVMTSVYGVTYI 361
Query: 802 GAREQIKRRLEEKGHITDD--RQLFAAACYAAKVTLTALGEIFEAARSIMGWLGDCAKVI 859
GAR+QI+ ++ KGH D+ ++F A Y A +T+ +G++F AR M WL CA++I
Sbjct: 362 GARQQIQEKIISKGHDVDEMSNEIFQACGYVASLTMEVMGDLFTGARETMNWLTTCARMI 421
Query: 860 ASENQPVRWTTPLGLPVVQPYCKNERHLIRTSLQVLALQREGNLVKIRKQR--TAFPPNF 917
P+ W +P+GLP +QPY + + I T LQ + L E + + I KQR +AFPPNF
Sbjct: 422 TQHGFPLAWVSPIGLPAIQPYRQKKAATIVTLLQTVTLINESDDLPIHKQRQVSAFPPNF 481
Query: 918 VHSLDGSHMMMTAVACRDAGLHFAGL 943
+HSLD SHM++TA+ GL F+ +
Sbjct: 482 IHSLDSSHMLLTALEMDRRGLTFSAV 507
>gi|190348218|gb|EDK40635.2| hypothetical protein PGUG_04733 [Meyerozyma guilliermondii ATCC 6260]
Length = 1303
Score = 439 bits (1130), Expect = e-120, Method: Compositional matrix adjust.
Identities = 287/846 (33%), Positives = 433/846 (51%), Gaps = 104/846 (12%)
Query: 157 GLYKRIKLQEYREMKKRKFNLL---RRRQ-----VKQETEAWERMVDEYKELEAKMIEKR 208
+Y+ +K E R+ +L R+RQ V E W+ +E ++ A I K
Sbjct: 342 AVYRSLKSDEQRQKFNEALDLFNESRQRQLELRGVDGAREKWKHEYEEMQKRGAFAIHKN 401
Query: 209 LAPNLPHIKGLFLGWFGPLSEAIEREQKMQR------------------TKKQKAAYAPH 250
L L W+ + +E+E K+ R K+++ YAP+
Sbjct: 402 LNVQL-------FKWYSDMLPYVEKEAKICRKIVAGELDVKDCKPEEAAQMKERSYYAPY 454
Query: 251 IELLPADKVAVIVMHKMMGLVMAGHEDRCVQVVQAAVHIGMAIEQEIRIHSFLEKTKNYK 310
+ L+P K+AVI + +++ L G ++ +A + +G A+E E + + +E
Sbjct: 455 MILVPPKKMAVITILELLKLNSTGGIVDGMRTARAVISVGKALELEYKSQNLVEA----- 509
Query: 311 RKKIIADTEEVLSKEKELLRKRVNSLIKSKRVMEAQKLLKNEE---TKPWGRDTQAKLGS 367
E+ L K++ + + K+++ +K E T W AK+GS
Sbjct: 510 --------------ERRSLSKKLKTTNQWKKILRTRKDYSKENPNATNEWDYPIYAKVGS 555
Query: 368 RLVELLIETAYVQ----HPVNPADYSPPDVRPAFRHRFKTILKHPGQKTTKRYGVVECDP 423
L LL+ A V PV ++PAF H ++ + GQ R GV++
Sbjct: 556 VLTSLLMHVAKVSVKGTDPVTGKQVKT--MQPAFHHTYQFL---QGQ----RLGVLKVHK 606
Query: 424 LVLEGLDRSAKHMLIP--YVPMLVPPKKWKGYNKGGYLFLPSYVMRTHGSRKQQEALKSV 481
++ L +A + +PMLVPP+ W YN GGYLF + ++R S + LK+
Sbjct: 607 SLIRQLAGNALSNAVQPQLLPMLVPPRPWVAYNDGGYLFSQNNIIRIKDSAETNAYLKAA 666
Query: 482 T--GNCMKKVFEALDTLGSTKWRVNKQVLSVLESIWVSGGNIAGLVDRNDVLIPEKPLSE 539
+ GN + +V+E L+ LG T W +N +V V+ W SG + + L P
Sbjct: 667 SDMGN-LDQVYEGLNVLGETCWTINHEVFDVISHYWNSGEKFLDIPSIVEELDIPPPPPI 725
Query: 540 DMTEVQKWKWSVRKAKKINQ--ERHSQRCDTELKLSVARRMKDEEGFYYPHNLDFRGRAY 597
D +QK + R + +N SQRCDT +L +AR E+ Y+ HN+DFRGRAY
Sbjct: 726 DADPLQKTDYQRRLRQLMNDAASARSQRCDTNYRLEIARAFLGEK-LYFSHNVDFRGRAY 784
Query: 598 PMHPHLNHLSSDVCRGVLEFAEGRPLGKSGLRWLKIHLANLFSGGVEKLSHDGRLAFVEN 657
P+ PH NHL +D+ R + F +G+ +G GL W+KIHLANL+ G+ K R+ FV++
Sbjct: 785 PLSPHFNHLGNDMTRSLFLFWDGKKVGARGLEWIKIHLANLY--GINKAPLHERVQFVDD 842
Query: 658 HLYEIFDSAENPINGSRWWLTAEDPFQCLAACINLSEALKSSSPHSVISHLPIHQDGSCN 717
+L+ I +SA+NP+ WW AE P+Q L C L A P ISHLPIHQDG+CN
Sbjct: 843 NLHHIIESAKNPLAEDAWWKKAEKPWQVLGVCFELKRAYDLEDPTEHISHLPIHQDGTCN 902
Query: 718 GLQHYAALGRNTLEAAAVNLVAGEKPADVYSEIAVRVHEIMKRDSNKDPSKHPQALLAKI 777
GLQHYAALG + A VNL+ ++P DVYS +A V KR + + + AL
Sbjct: 903 GLQHYAALGGDFEGARQVNLIPADRPQDVYSFVASLVQ---KRVDAEAEAGNEYALF--- 956
Query: 778 LIDQVDRKLVKQTVMTSVYGVTFVGAREQIKRRLEEKGHITDDRQLFAAACYAAKVTLTA 837
L D++ RK+VKQTVMT+VYGVTFVGA QI++++++ D ++ + Y + +
Sbjct: 957 LRDKITRKVVKQTVMTNVYGVTFVGAVAQIQKQIDQYFSKEDQDKVADYSRYLTMLVFAS 1016
Query: 838 LGEIFEAARSIMGWLGDCAKVIA------SENQPVR------------WTTPLGLPVVQP 879
+ E+F A I WLG+ AK I+ +E PV+ WTTPLGLP VQP
Sbjct: 1017 MRELFSGAHLIQDWLGEAAKRISKSVRTDAEENPVQSSDKPSHLSSVIWTTPLGLPCVQP 1076
Query: 880 YCKNERHLIRTSLQVLALQRE--GNLVKIRKQRTAFPPNFVHSLDGSHMMMTAVACRDAG 937
Y ++ ++ T+LQ + + + V RKQ++AFPPNFVHSLD +HM+MTA AC +G
Sbjct: 1077 YRVTKKQIVHTNLQDIVISDPFGASQVDARKQQSAFPPNFVHSLDATHMLMTARACGQSG 1136
Query: 938 LHFAGL 943
L FA +
Sbjct: 1137 LAFAAV 1142
>gi|429243230|ref|NP_594459.2| mitochondrial RNA polymerase Rpo41 [Schizosaccharomyces pombe 972h-]
gi|384872627|sp|O13993.2|RPOM_SCHPO RecName: Full=DNA-directed RNA polymerase, mitochondrial; Flags:
Precursor
gi|347834189|emb|CAB16197.2| mitochondrial RNA polymerase Rpo41 [Schizosaccharomyces pombe]
Length = 1154
Score = 439 bits (1129), Expect = e-120, Method: Compositional matrix adjust.
Identities = 272/771 (35%), Positives = 404/771 (52%), Gaps = 75/771 (9%)
Query: 215 HIKGLFLGWFGPLSEAIEREQKM---------QRTKKQKAAYAPHIELLPADKVAVIVMH 265
++ LF W+ L + + E + K + Y P ++LL + K+A + +
Sbjct: 322 NVSSLFYSWYVQLEQLFKEEISLIDDLALNESLDKKNDRLIYGPFLKLLSSKKLAALTIM 381
Query: 266 KMMGLVMAGHEDRCVQVVQAAVHIGMAIEQEIRIHSFL--EKTKNYKRKKIIADTEEVLS 323
++ L DR +V +G + E+E EK K+YK KK
Sbjct: 382 EVAQLSTNPRYDRGARVTTLLGGLGRSFEREFLSEQIQRQEKNKSYKDKK---------- 431
Query: 324 KEKELLR--KRVNSLIKSKRVMEAQ-KLLKNEETKPWGRDTQAKLGSRLVELLIETAYVQ 380
+ KEL ++ +K+ R+ + ++ N W K+GS + LL+ A ++
Sbjct: 432 RLKELFNDPRKFRQAVKNLRLSNTRDNIVLNPSVDSWPSAIVMKVGSVALCLLLSVAKIE 491
Query: 381 HPVNPADYSPPDVR----PAFRHRFKTILKHPGQKTTKRYGVVECDPLVLEGLDRSAKHM 436
V D S + AF H ++ G+K VE L+ +++ H+
Sbjct: 492 --VTAKDLSTGGILKQEVAAFVHTYQY---SNGRKVGMIVPHVEFYKLLSRDIEKP--HL 544
Query: 437 LIPYVPMLVPPKKWKGYNKGGYLFLPSYVMRTHGSRKQQEALKSVTGNC-MKKVFEALDT 495
+PMLV PK W + GGY + ++R G+ +Q + L + N + ++F+A+ +
Sbjct: 545 HPQLLPMLVTPKPWTSWIDGGYYYSRQPLVRLKGALEQVDYLMKASENGQLDELFKAVSS 604
Query: 496 LGSTKWRVNKQVLSVLESIWVSGGNIAGLVDRN-DVLIPEKPLSEDMTEVQKWKWSVRKA 554
LG WR+N+++ +VL IW SG + R +P P + K W R+
Sbjct: 605 LGKVSWRINQRLFNVLIRIWNSGEKFLSIPPREVKCDMPPYP-KNSINPRDKVIWHTRRK 663
Query: 555 K--KINQERHSQRCDTELKLSVARRMKDEEGFYYPHNLDFRGRAYPMHPHLNHLSSDVCR 612
+ + HSQRCD KL +AR +E+ FY+PH+LDFRGRAYP+ HL+H+S+DVCR
Sbjct: 664 ELAALKTGAHSQRCDFNYKLEIARAFLNEK-FYFPHSLDFRGRAYPLSSHLHHVSNDVCR 722
Query: 613 GVLEFAEGRPLGKSGLRWLKIHLANLFSGGVEKLSHDGRLAFVENHLYEIFDSAENPING 672
G+LEF+ G+PLG GL WLK+HLANLF G+ K R AFV++++ E+FDSA+ P++G
Sbjct: 723 GLLEFSTGKPLGPKGLNWLKVHLANLF--GISKKDFATRQAFVDDNMQEVFDSADRPLDG 780
Query: 673 SRWWLTAEDPFQCLAACINLSEALKSSSPHSVISHLPIHQDGSCNGLQHYAALGRNTLEA 732
++WW A+DPFQ LAAC ++EA++S S ISH+PI QDG+CNGLQHYAALG + A
Sbjct: 781 NKWWSKADDPFQALAACFEIAEAVRSGDHESYISHIPIQQDGTCNGLQHYAALGGDIEGA 840
Query: 733 AAVNLVAGEKPADVYSEIAVRVHEIMKRDSNKDPSKHPQALLAKILIDQVDRKLVKQTVM 792
VNL + P+DVY +A V +K+D+ +A L D+V R +VK TVM
Sbjct: 841 KQVNLWPSDHPSDVYEAVAEIVRGFLKKDAEAGDE------MANFLKDKVTRSVVKPTVM 894
Query: 793 TSVYGVTFVGAREQIKRRLE-----EKGHITDDRQLFAAACYAAKVTLTALGEIFEAARS 847
T+VYGVT+VGAR+QI +LE EK + D A Y K AL +F A
Sbjct: 895 TNVYGVTYVGARKQISEKLENIDGMEKLKVAD------YANYLTKKVFEALRSLFTQAHE 948
Query: 848 IMGWLGDCAKVIA-------------SENQPVRWTTPLGLPVVQPYCKNERHLIRTSLQV 894
I WL C +I E PV WTT L LP+VQPY + IRT+LQ
Sbjct: 949 IQDWLSACCNLITHSLPADYIKEGIKDELTPVVWTTLLNLPIVQPYRNYKSRQIRTNLQT 1008
Query: 895 LALQREGNLVKIR--KQRTAFPPNFVHSLDGSHMMMTAVACRDAGLHFAGL 943
+ ++ ++ KQ TAFPPNF+HSLD +HM MT + C + ++FA +
Sbjct: 1009 VFIEERDRTATVQPHKQATAFPPNFIHSLDATHMFMTCLKCSEQNINFAAV 1059
>gi|75301087|sp|Q8L6J2.1|RPO2A_TOBAC RecName: Full=DNA-directed RNA polymerase 2A; AltName:
Full=NictaRpoT2-syl; AltName: Full=T7 bacteriophage-type
single subunit RNA polymerase 2A
gi|21425675|emb|CAC95025.1| mitochondrial and plastid RNA polymerase [Nicotiana tabacum]
Length = 332
Score = 439 bits (1129), Expect = e-120, Method: Compositional matrix adjust.
Identities = 202/263 (76%), Positives = 237/263 (90%)
Query: 681 DPFQCLAACINLSEALKSSSPHSVISHLPIHQDGSCNGLQHYAALGRNTLEAAAVNLVAG 740
DPFQCLA CINLSEA++SSSP + +SH+P+HQDGSCNGLQHYAALGR+ L AAAVNLVAG
Sbjct: 1 DPFQCLAVCINLSEAVRSSSPETSVSHIPVHQDGSCNGLQHYAALGRDKLGAAAVNLVAG 60
Query: 741 EKPADVYSEIAVRVHEIMKRDSNKDPSKHPQALLAKILIDQVDRKLVKQTVMTSVYGVTF 800
EKPADVYS IA RV +IMKRD+ +DP++ P A+ A++L++QVDRKLVKQTVMTSVYGVT+
Sbjct: 61 EKPADVYSGIAARVLDIMKRDAQRDPAEFPDAVRARVLVNQVDRKLVKQTVMTSVYGVTY 120
Query: 801 VGAREQIKRRLEEKGHITDDRQLFAAACYAAKVTLTALGEIFEAARSIMGWLGDCAKVIA 860
+GAR+QIKRRL+E+G I DD +LF AACYAAKVTLTALGE+FEAARSIM WLG+CAK+IA
Sbjct: 121 IGARDQIKRRLKERGAIADDSELFGAACYAAKVTLTALGEMFEAARSIMTWLGECAKIIA 180
Query: 861 SENQPVRWTTPLGLPVVQPYCKNERHLIRTSLQVLALQREGNLVKIRKQRTAFPPNFVHS 920
SEN+PVRWTTPLGLPVVQPY K RHLI+TSLQ+L LQRE V +++QRTAFPPNF+HS
Sbjct: 181 SENEPVRWTTPLGLPVVQPYRKIGRHLIKTSLQILTLQRETEKVMVKRQRTAFPPNFIHS 240
Query: 921 LDGSHMMMTAVACRDAGLHFAGL 943
LDGSHMMMTAVACR AGL+FAG+
Sbjct: 241 LDGSHMMMTAVACRRAGLNFAGV 263
>gi|322694289|gb|EFY86123.1| DNA-directed RNA polymerase [Metarhizium acridum CQMa 102]
Length = 1414
Score = 438 bits (1127), Expect = e-120, Method: Compositional matrix adjust.
Identities = 260/654 (39%), Positives = 373/654 (57%), Gaps = 77/654 (11%)
Query: 342 VMEAQKLLKNEETKPWGRDTQAKLGSRLVELLIETAYV----QHPVNPADYSPPDVRPAF 397
V E K L+N +PW +A++GS L++ LI+ A+V +HP S +PAF
Sbjct: 549 VSETAKELENATREPWSISIRAQVGSFLLKTLIDNAFVKVTMEHPTTKEPIS--QKQPAF 606
Query: 398 RHRFKTILKHPGQKTTKRYGVVECDPLVLEGL------DRSAKHMLIPYVPMLVPPKKWK 451
H ++ P + K+ GV+ + +++ L D AKH+ PM+V PK W+
Sbjct: 607 TH-----MQQP--RRGKKVGVLHFNSNLVQQLKKEPVGDYIAKHL-----PMIVEPKPWR 654
Query: 452 GYNKGGYLFLPSYVMRTHGSRKQQEALKSV---TGNCMKKVFEALDTLGSTKWRVNKQVL 508
N+GG+L + +R +Q+ TG+ M +VF+ LD LG T WR+NK VL
Sbjct: 655 QLNEGGFLDSRTTFVRVKSGDVEQKLYTEAAIKTGD-MTQVFKGLDVLGKTAWRINKNVL 713
Query: 509 SVLESIWVSGGNIAGLVDRN-DVLIPEKP-LSEDMTEVQKWKWSVRKAKKINQERHSQRC 566
+V+ W SG IA + N + IPE+P S D + W +V+ + HSQRC
Sbjct: 714 NVMMEAWNSGEEIANMPPLNPEFDIPEEPDSSADPLLRRSWMQAVKAIENERSGMHSQRC 773
Query: 567 DTELKLSVARRMKDEEGFYYPHNLDFRGRAYPMHPHLNHLSSDVCRGVLEFAEGRPLGKS 626
L+L +AR +++ Y+PHN+D+RGRAYPM +LNH+ +D R +L+FA G+ LG+
Sbjct: 774 FMNLQLEIARAFRNQT-MYFPHNIDYRGRAYPMPTYLNHMGADHARAILKFARGKELGER 832
Query: 627 GLRWLKIHLANLFSGGVEKLSHDGRLAFVENHLYEIFDSAENPINGSRWWLTAEDPFQCL 686
GLRWLKIHLANL+ G++K + D R AF +++ I DSA NP+NGSRWWL AED +QCL
Sbjct: 833 GLRWLKIHLANLY--GLDKSNFDEREAFTNDNISNIIDSATNPLNGSRWWLKAEDAWQCL 890
Query: 687 AACINLSEALKSSSPHSVISHLPIHQDGSCNGLQHYAALGRNTLEAAAVNLVAGEKPADV 746
AAC L AL+ P +S LP+HQDG+CNGLQHYAALG +T A VNL GE+PADV
Sbjct: 891 AACFELKAALELPDPTKFVSQLPVHQDGTCNGLQHYAALGGDTWGAKQVNLEPGERPADV 950
Query: 747 YSEIAVRVHEIMKRDSNKDPSKHPQALLAKILIDQVDRKLVKQTVMTSVYGVTFVGAREQ 806
YS +A V + + +D+ +K+ AL +L ++ RK+VKQTVMT+VYGVTF GA++Q
Sbjct: 951 YSAVADLVKQAIDKDAE---AKNEFAL---VLQGKITRKVVKQTVMTNVYGVTFAGAKKQ 1004
Query: 807 IKRRLE----EKGHITDDRQLFAAACYAAKVTLTALGEIFEAARSIMGWLGD-----CAK 857
+ ++++ + G L + Y A+ AL +F A I WLG+ C
Sbjct: 1005 VCKQIDALYPDLGKECGIPNL-VLSTYIARHIFNALATMFRGAHDIQYWLGEIGGRVCRA 1063
Query: 858 VIASENQPVR--------------------------WTTPLGLPVVQPYCKNERHLIRTS 891
+ ++ + +R WTTPL +PVVQPY K+ IRT
Sbjct: 1064 LTPAQLKEIRDSYEKEGSTKKDELDDLMKHFRSSVVWTTPLRMPVVQPYRKSTAREIRTC 1123
Query: 892 LQ--VLALQREGNLVKIRKQRTAFPPNFVHSLDGSHMMMTAVACRDAGLHFAGL 943
LQ V + + + V RKQ FPPNF+HSLD SHM+++A+ C + GL FA +
Sbjct: 1124 LQSVVYPVNEQTDPVNKRKQLQGFPPNFIHSLDASHMLLSALQCHEQGLDFAAV 1177
>gi|448517808|ref|XP_003867858.1| Rpo41 mitochondrial RNA polymerase [Candida orthopsilosis Co 90-125]
gi|380352197|emb|CCG22421.1| Rpo41 mitochondrial RNA polymerase [Candida orthopsilosis]
Length = 1291
Score = 438 bits (1126), Expect = e-120, Method: Compositional matrix adjust.
Identities = 286/833 (34%), Positives = 441/833 (52%), Gaps = 92/833 (11%)
Query: 158 LYKRIKLQEYREMKKR---KFNLLRRRQVKQETEAWERMVDEYKELEAKMIEKRLAPNL- 213
+YKR++ E RE FNL R+R++ E E +++K + + +KR NL
Sbjct: 344 IYKRLQTDEQREKYNEALETFNLDRQREI--EIRGIEGAKEKWKH-DFEEAQKRGDFNLN 400
Query: 214 PHIKGLFLGWFGPLSEAIEREQKMQR---------------TKKQKAAYAPHIELLPADK 258
+ W+ L IE+E KM + T K +A YAP + + A+K
Sbjct: 401 KSMNAQCYDWYQKLIPLIEKEHKMCKALLRDDEPVAQDDTTTTKDRAFYAPFLTKVGAEK 460
Query: 259 VAVIVMHKMMGLVMAGHEDRCVQVVQAAVHIGMAIEQEIRIHSFLEKTKNYKRKKIIADT 318
AVI + +++ L +G + ++ V+A +G AIE E R + ++ + +A +
Sbjct: 461 AAVITILELLKLNASGSNNGGMRAVKAITSVGRAIEMEYRTSNLADQEYKMSVSRKVAGS 520
Query: 319 EEVLSKEKELLRKRVNSLIKSKRVMEAQKLLKNEETKP-WGRDTQAKLGSRLVELLIETA 377
S+ K+++R ++S EE P W T++++G LV L+ A
Sbjct: 521 ----SQMKKIVRNSIDS---------------QEEADPEWDHATRSRVGGVLVSFLMAIA 561
Query: 378 YVQHPVNPADYSPPDVRPAFRHRFKTILKHPGQKTTKRYGVVECDPLVLEGLDRSAKHML 437
V+ + D PAF H + + GQ R+GV++ + + L ++
Sbjct: 562 KVKVRRQTPKGTIEDYHPAFFHSMQFV---GGQ----RFGVIKIHNEISKNLSGTSFMET 614
Query: 438 IP--YVPMLVPPKKWKGYNKGGYLFLPSYVMRTHGSRKQQEALKSVT--GNCMKKVFEAL 493
I +PMLV PK W + G L+ + ++R + + + +K+ GN +++VF+ L
Sbjct: 615 IQPQSLPMLVKPKPWDSFYGGIGLYSKNALVRMKDAPETEAYVKAAAKRGN-LQEVFDGL 673
Query: 494 DTLGSTKWRVNKQVLSVLESIWVSGGNIAGL--VDRNDVLIPEKPLSEDMTEVQKW---K 548
+ LG+T W +NK+V V+ W G + V + P+ LS D +++ K
Sbjct: 674 NVLGTTAWTINKKVFDVISHYWNKGDEFLTIPPVLESAQFPPK--LSPDADPSERYDHTK 731
Query: 549 WSVRKAKKINQERHSQRCDTELKLSVARRMKDEEGFYYPHNLDFRGRAYPMHPHLNHLSS 608
+++ ++ + R SQRCD KL +AR E+ Y+PHNLDFRGRAYP+ PHLNHL
Sbjct: 732 ATIKAVREFSSSR-SQRCDYNYKLEIARGFIGEK-LYFPHNLDFRGRAYPISPHLNHLGG 789
Query: 609 DVCRGVLEFAEGRPLGKSGLRWLKIHLANLFSGGVEKLSHDGRLAFVENHLYEIFDSAEN 668
D+ R + F EG+ LG+ GL WLK+ LAN++ GV+K R+ F +H+ E SAE+
Sbjct: 790 DLTRSLFLFWEGKELGERGLEWLKVQLANVY--GVDKAPISERIQFATDHIEEAIKSAED 847
Query: 669 PINGSRWWLTAEDPFQCLAACINLSEALKSSSPHSVISHLPIHQDGSCNGLQHYAALGRN 728
P+ +WW AE P+Q L+ C L+EA K P +S+LP+HQDG+CNGLQHYAALG +
Sbjct: 848 PLE-YKWWTKAEKPWQALSVCFELAEAYKLPDPTKFVSYLPVHQDGTCNGLQHYAALGGD 906
Query: 729 TLEAAAVNLVAGEKPADVYSEIAVRVHEIMKRDSNKDPSKHPQALLAKILIDQVDRKLVK 788
A VNL ++P DVY+ ++ V + D+ K H A+ K D++ RK+VK
Sbjct: 907 IEGANQVNLNPSDRPQDVYTFVSKLVQNRVNADAEKG---HDIAIFFK---DKIKRKVVK 960
Query: 789 QTVMTSVYGVTFVGAREQIKRRLEEKGHITDDRQLFAAACYAAKVTLTALGEIFEAARSI 848
QTVMT+VYGVTFVGA QIK+++ + H +D+ Y K ++ E+FE A I
Sbjct: 961 QTVMTNVYGVTFVGALAQIKKQVAQ--HFGEDQDAHIYTKYLTKQVFASIRELFENAHLI 1018
Query: 849 MGWLGDCAKVIA------------SENQ----PVRWTTPLGLPVVQPYCKNERHLIRTSL 892
WLG+ AK I+ SE++ V WTTPLGLP VQPY N+ H ++TS+
Sbjct: 1019 QDWLGEAAKRISKSVSVDYGDVSNSESELHSSAVIWTTPLGLPCVQPYRVNKHHSVKTSV 1078
Query: 893 QVLALQREGNLVKI--RKQRTAFPPNFVHSLDGSHMMMTAVACRDAGLHFAGL 943
Q + + I RKQ+ FPPNF+HSLD +HM+MTA +C ++ L FA +
Sbjct: 1079 QDVLISNPSGTSTIDSRKQQAGFPPNFIHSLDATHMLMTATSCGESDLQFASV 1131
>gi|146413615|ref|XP_001482778.1| hypothetical protein PGUG_04733 [Meyerozyma guilliermondii ATCC 6260]
Length = 1303
Score = 438 bits (1126), Expect = e-120, Method: Compositional matrix adjust.
Identities = 287/846 (33%), Positives = 432/846 (51%), Gaps = 104/846 (12%)
Query: 157 GLYKRIKLQEYREMKKRKFNLL---RRRQ-----VKQETEAWERMVDEYKELEAKMIEKR 208
+Y+ +K E R+ +L R+RQ V E W+ +E ++ A I K
Sbjct: 342 AVYRSLKSDEQRQKFNEALDLFNESRQRQLELRGVDGAREKWKHEYEEMQKRGAFAIHKN 401
Query: 209 LAPNLPHIKGLFLGWFGPLSEAIEREQKMQR------------------TKKQKAAYAPH 250
L L W+ + +E+E K+ R K+++ YAP+
Sbjct: 402 LNVQL-------FKWYSDMLPYVEKEAKICRKIVAGELDVKDCKPEEAAQMKERSYYAPY 454
Query: 251 IELLPADKVAVIVMHKMMGLVMAGHEDRCVQVVQAAVHIGMAIEQEIRIHSFLEKTKNYK 310
+ L+P K+AVI + +++ L G ++ +A + +G A+E E + + +E
Sbjct: 455 MILVPPKKMAVITILELLKLNSTGGIVDGMRTARAVISVGKALELEYKSQNLVEA----- 509
Query: 311 RKKIIADTEEVLSKEKELLRKRVNSLIKSKRVMEAQKLLKNEE---TKPWGRDTQAKLGS 367
E+ L K++ + + K+++ +K E T W AK+GS
Sbjct: 510 --------------ERRSLSKKLKTTNQWKKILRTRKDYSKENPNATNEWDYPIYAKVGS 555
Query: 368 RLVELLIETAYVQ----HPVNPADYSPPDVRPAFRHRFKTILKHPGQKTTKRYGVVECDP 423
L LL+ A V PV ++PAF H ++ + GQ R GV++
Sbjct: 556 VLTSLLMHVAKVSVKGTDPVTGKQVKT--MQPAFHHTYQFL---QGQ----RLGVLKVHK 606
Query: 424 LVLEGLDRSAKHMLIP--YVPMLVPPKKWKGYNKGGYLFLPSYVMRTHGSRKQQEALKSV 481
++ L +A + +PMLVPP+ W YN GGYLF + ++R S + LK+
Sbjct: 607 SLIRQLAGNALSNAVQPQLLPMLVPPRPWVAYNDGGYLFSQNNIIRIKDSAETNAYLKAA 666
Query: 482 T--GNCMKKVFEALDTLGSTKWRVNKQVLSVLESIWVSGGNIAGLVDRNDVLIPEKPLSE 539
+ GN + +V+E L+ LG T W +N +V V+ W SG + + L P
Sbjct: 667 SDMGN-LDQVYEGLNVLGETCWTINHEVFDVISHYWNSGEKFLDIPSIVEELDIPPPPPI 725
Query: 540 DMTEVQKWKWSVRKAKKINQ--ERHSQRCDTELKLSVARRMKDEEGFYYPHNLDFRGRAY 597
D +QK + R + +N SQRCDT +L +AR E+ Y+ HN+DFRGRAY
Sbjct: 726 DADPLQKTDYQRRLRQLMNDAASARSQRCDTNYRLEIARAFLGEK-LYFSHNVDFRGRAY 784
Query: 598 PMHPHLNHLSSDVCRGVLEFAEGRPLGKSGLRWLKIHLANLFSGGVEKLSHDGRLAFVEN 657
P+ PH NHL +D+ R + F +G+ +G GL W+KIHLANL+ G+ K R+ FV++
Sbjct: 785 PLSPHFNHLGNDMTRSLFLFWDGKKVGARGLEWIKIHLANLY--GINKAPLHERVQFVDD 842
Query: 658 HLYEIFDSAENPINGSRWWLTAEDPFQCLAACINLSEALKSSSPHSVISHLPIHQDGSCN 717
+L+ I +SA+NP+ WW AE P+Q L C L A P ISHLPIHQDG+CN
Sbjct: 843 NLHHIIESAKNPLAEDAWWKKAEKPWQVLGVCFELKRAYDLEDPTEHISHLPIHQDGTCN 902
Query: 718 GLQHYAALGRNTLEAAAVNLVAGEKPADVYSEIAVRVHEIMKRDSNKDPSKHPQALLAKI 777
GLQHYAALG + A VNL+ ++P DVYS +A V KR + + + AL
Sbjct: 903 GLQHYAALGGDFEGARQVNLIPADRPQDVYSFVASLVQ---KRVDAEAEAGNEYALF--- 956
Query: 778 LIDQVDRKLVKQTVMTSVYGVTFVGAREQIKRRLEEKGHITDDRQLFAAACYAAKVTLTA 837
L D++ RK+VKQTVMT+VYGVTFVGA QI++++++ D ++ + Y + +
Sbjct: 957 LRDKITRKVVKQTVMTNVYGVTFVGAVAQIQKQIDQYFSKEDQDKVADYSRYLTMLVFAS 1016
Query: 838 LGEIFEAARSIMGWLGDCAKVIA------SENQPVR------------WTTPLGLPVVQP 879
+ E+F A I WLG+ AK I+ +E PV+ WTTPLGLP VQP
Sbjct: 1017 MRELFSGAHLIQDWLGEAAKRISKSVRTDAEENPVQSSDKPSHLSSVIWTTPLGLPCVQP 1076
Query: 880 YCKNERHLIRTSLQVLALQRE--GNLVKIRKQRTAFPPNFVHSLDGSHMMMTAVACRDAG 937
Y ++ ++ T+LQ + + + V RKQ++AFPPNFVHSLD +HM+MTA AC G
Sbjct: 1077 YRVTKKQIVHTNLQDIVISDPFGASQVDARKQQSAFPPNFVHSLDATHMLMTARACGQLG 1136
Query: 938 LHFAGL 943
L FA +
Sbjct: 1137 LAFAAV 1142
>gi|67477377|sp|P38671.2|RPOM_NEUCR RecName: Full=DNA-directed RNA polymerase, mitochondrial; Flags:
Precursor
Length = 1423
Score = 437 bits (1125), Expect = e-119, Method: Compositional matrix adjust.
Identities = 268/784 (34%), Positives = 410/784 (52%), Gaps = 96/784 (12%)
Query: 231 IEREQKMQRTKKQK-----AAYAPHIELLPADKVAVIVMHKMMGLVMAGHEDRCVQVVQA 285
+E E+ +KK K Y P I +++A + + + + G + +
Sbjct: 420 VEVEKSEMVSKKNKDDLDRCIYGPFIRQSNPERLAAVTIISTLSSLAMGGAHKGSTIASL 479
Query: 286 AVHIGMAIEQEIRIHSFLEKTKNYKRKKIIADTEEVLSKEKELLR-KRVNSLIKSKRVME 344
HI E++IR+ +K + K+ + + + +LR K + S + +
Sbjct: 480 ITHIAKFAEEDIRV----QKAEALISKRNLRKAKSKQHNPRSVLRFKNSTASAGSSDMAD 535
Query: 345 AQKLLKNEETKPWGRDTQAKLGSRLVELLIETAYV----QHPVNPADYSPPDVRPAFRHR 400
+ + + + W + K+G+ L+ L++TA + + PV + +PAF H
Sbjct: 536 SNNVAVEMDDEAWTTTIRTKVGAALLSALLDTAKITLVREDPVTKTLIT--QNQPAFSHV 593
Query: 401 FKTILKHPGQKTTKRYGVVECDPLVLEGLDRS-AKHMLIPYVPMLVPPKKWKGYNKGGYL 459
+ + K+ G + + V+E L R L ++PM+ PP W + KG YL
Sbjct: 594 MQL-------RKGKKIGTIIPNKAVVELLVREPVPDFLARHLPMVTPPDPWVSFEKGAYL 646
Query: 460 FLPSYVMRTHGSRKQQEALK--SVTGNCMKKVFEALDTLGSTKWRVNKQVLSVLESIWVS 517
+ V+R ++Q ++ M +VF+ LD LG T W++N V V+ +W S
Sbjct: 647 ETKTPVLRLKNGEREQRLYTEAAIARGDMDQVFKGLDVLGKTGWKINSPVFKVMLDVWNS 706
Query: 518 GGNIAGLVDRNDV--LIPEKPLSEDMTEVQKWKWSVRKAKKINQER---HSQRCDTELKL 572
G +A + + + L PE +ED T + W +++ K I ER HSQRC +L
Sbjct: 707 GKQVANIPPLDPIFDLPPEPASTEDPTVKRAW---LKEIKVIENERSGLHSQRCFMNFQL 763
Query: 573 SVARRMKDEEGFYYPHNLDFRGRAYPMHPHLNHLSSDVCRGVLEFAEGRPLGKSGLRWLK 632
+AR +D+ FY+PHN+DFRGRAYP+ P+LNH+ +D RG++ FA+G+PLG+SGLRWLK
Sbjct: 764 EIARAYRDQT-FYFPHNVDFRGRAYPIPPYLNHMGADHVRGLMLFAKGKPLGESGLRWLK 822
Query: 633 IHLANLFSGGVEKLSHDGRLAFVENHLYEIFDSAENPINGSRWWLTAEDPFQCLAACINL 692
+HLAN++ G +K S R F + ++ I DS NP+NG++WWL AEDP+QCLA C L
Sbjct: 823 VHLANVY--GFDKASLQERQDFADENIENIRDSVNNPLNGNQWWLQAEDPWQCLATCFEL 880
Query: 693 SEALKSSSPHSVISHLPIHQDGSCNGLQHYAALGRNTLEAAAVNLVAGEKPADVYSEIAV 752
+ AL+ P +SHLPIHQDG+CNGLQHYAALG +T A VNLV G++PADVYS +A
Sbjct: 881 AAALELEDPTKYVSHLPIHQDGTCNGLQHYAALGGDTWGAQQVNLVPGDRPADVYSAVAK 940
Query: 753 RVHEIMKRDSNKDPSKHPQALLAKILIDQVDRKLVKQTVMTSVYGVTFVGAREQIKRRLE 812
V + ++ D KD AK + ++ RK+VKQTVMT+VYGVT+VGAR+Q+ +++E
Sbjct: 941 LVIKGIEDDLAKDNE------FAKAMHGKITRKVVKQTVMTNVYGVTYVGARKQVLKQIE 994
Query: 813 EK-GHITDDRQLFAA--ACYAAKVTLTALGEIFEAARSIMGWLGDCAKVIA--------- 860
+IT + + AA A Y + A+ +F+ A I WLG+ +
Sbjct: 995 AAYPNITAESGIEAALLASYVTQHIFRAMSTMFKGAHDIQNWLGEIGGRVCRALTPEQLD 1054
Query: 861 ----SENQP-----------------------------------VRWTTPLGLPVVQPYC 881
SE P + WTTPL +PVVQPY
Sbjct: 1055 EFERSERSPHGDGTASGENITLAGNPRKSSAHKNDEILNNFQSTIIWTTPLRMPVVQPYR 1114
Query: 882 KNERHLIRTSLQ--VLALQREGNLVKIRKQRTAFPPNFVHSLDGSHMMMTAVACRDAGLH 939
K+ + T +Q V+ + + V RKQ AFPPNF+HSLD SHM+++A+ C + GL
Sbjct: 1115 KHGTKTVSTCMQDLVMTIPERSDPVNRRKQLQAFPPNFIHSLDASHMILSALHCDELGLT 1174
Query: 940 FAGL 943
FA +
Sbjct: 1175 FAAV 1178
>gi|164425173|ref|XP_962570.2| hypothetical protein NCU06308 [Neurospora crassa OR74A]
gi|157070818|gb|EAA33334.2| predicted protein [Neurospora crassa OR74A]
Length = 1443
Score = 437 bits (1123), Expect = e-119, Method: Compositional matrix adjust.
Identities = 268/784 (34%), Positives = 410/784 (52%), Gaps = 96/784 (12%)
Query: 231 IEREQKMQRTKKQK-----AAYAPHIELLPADKVAVIVMHKMMGLVMAGHEDRCVQVVQA 285
+E E+ +KK K Y P I +++A + + + + G + +
Sbjct: 420 VEVEKSEMVSKKNKDDLDRCIYGPFIRQSNPERLAAVTIISTLSSLAMGGAHKGSTIASL 479
Query: 286 AVHIGMAIEQEIRIHSFLEKTKNYKRKKIIADTEEVLSKEKELLR-KRVNSLIKSKRVME 344
HI E++IR+ +K + K+ + + + +LR K + S + +
Sbjct: 480 ITHIAKFAEEDIRV----QKAEALISKRNLRKAKSKQHNPRSVLRFKNSTASAGSSDMAD 535
Query: 345 AQKLLKNEETKPWGRDTQAKLGSRLVELLIETAYV----QHPVNPADYSPPDVRPAFRHR 400
+ + + + W + K+G+ L+ L++TA + + PV + +PAF H
Sbjct: 536 SNNVAVEMDDEAWTTTIRTKVGAALLSALLDTAKITLVREDPVTKTLIT--QNQPAFSHV 593
Query: 401 FKTILKHPGQKTTKRYGVVECDPLVLEGLDRS-AKHMLIPYVPMLVPPKKWKGYNKGGYL 459
+ + K+ G + + V+E L R L ++PM+ PP W + KG YL
Sbjct: 594 MQL-------RKGKKIGTIIPNKAVVELLVREPVPDFLARHLPMVTPPDPWVSFEKGAYL 646
Query: 460 FLPSYVMRTHGSRKQQEALK--SVTGNCMKKVFEALDTLGSTKWRVNKQVLSVLESIWVS 517
+ V+R ++Q ++ M +VF+ LD LG T W++N V V+ +W S
Sbjct: 647 ETKTPVLRLKNGEREQRLYTEAAIARGDMDQVFKGLDVLGKTGWKINSPVFKVMLDVWNS 706
Query: 518 GGNIAGLVDRNDV--LIPEKPLSEDMTEVQKWKWSVRKAKKINQER---HSQRCDTELKL 572
G +A + + + L PE +ED T + W +++ K I ER HSQRC +L
Sbjct: 707 GKQVANIPPLDPIFDLPPEPASTEDPTVKRAW---LKEIKVIENERSGLHSQRCFMNFQL 763
Query: 573 SVARRMKDEEGFYYPHNLDFRGRAYPMHPHLNHLSSDVCRGVLEFAEGRPLGKSGLRWLK 632
+AR +D+ FY+PHN+DFRGRAYP+ P+LNH+ +D RG++ FA+G+PLG+SGLRWLK
Sbjct: 764 EIARAYRDQT-FYFPHNVDFRGRAYPIPPYLNHMGADHVRGLMLFAKGKPLGESGLRWLK 822
Query: 633 IHLANLFSGGVEKLSHDGRLAFVENHLYEIFDSAENPINGSRWWLTAEDPFQCLAACINL 692
+HLAN++ G +K S R F + ++ I DS NP+NG++WWL AEDP+QCLA C L
Sbjct: 823 VHLANVY--GFDKASLQERQDFADENIENIRDSVNNPLNGNQWWLQAEDPWQCLATCFEL 880
Query: 693 SEALKSSSPHSVISHLPIHQDGSCNGLQHYAALGRNTLEAAAVNLVAGEKPADVYSEIAV 752
+ AL+ P +SHLPIHQDG+CNGLQHYAALG +T A VNLV G++PADVYS +A
Sbjct: 881 AAALELEDPTKYVSHLPIHQDGTCNGLQHYAALGGDTWGAQQVNLVPGDRPADVYSAVAK 940
Query: 753 RVHEIMKRDSNKDPSKHPQALLAKILIDQVDRKLVKQTVMTSVYGVTFVGAREQIKRRLE 812
V + ++ D KD AK + ++ RK+VKQTVMT+VYGVT+VGAR+Q+ +++E
Sbjct: 941 LVIKGIEDDLAKDNE------FAKAMHGKITRKVVKQTVMTNVYGVTYVGARKQVLKQIE 994
Query: 813 EK-GHITDDRQLFAA--ACYAAKVTLTALGEIFEAARSIMGWLGDCAKVIA--------- 860
+IT + + AA A Y + A+ +F+ A I WLG+ +
Sbjct: 995 AAYPNITAESGIEAALLASYVTQHIFRAMSTMFKGAHDIQNWLGEIGGRVCRALTPEQLD 1054
Query: 861 ----SENQP-----------------------------------VRWTTPLGLPVVQPYC 881
SE P + WTTPL +PVVQPY
Sbjct: 1055 EFERSERSPHGDGTASGENITLAGNPRKSSAHKNDEILNNFQSTIIWTTPLRMPVVQPYR 1114
Query: 882 KNERHLIRTSLQ--VLALQREGNLVKIRKQRTAFPPNFVHSLDGSHMMMTAVACRDAGLH 939
K+ + T +Q V+ + + V RKQ AFPPNF+HSLD SHM+++A+ C + GL
Sbjct: 1115 KHGTKTVSTCMQDLVMTIPERSDPVNRRKQLQAFPPNFIHSLDASHMILSALHCDELGLT 1174
Query: 940 FAGL 943
FA +
Sbjct: 1175 FAAV 1178
>gi|310796543|gb|EFQ32004.1| DNA-dependent RNA polymerase [Glomerella graminicola M1.001]
Length = 1395
Score = 436 bits (1122), Expect = e-119, Method: Compositional matrix adjust.
Identities = 278/786 (35%), Positives = 407/786 (51%), Gaps = 116/786 (14%)
Query: 229 EAIEREQKMQRTKKQKAAYAPHIEL-LPADKVAVIVMHKMMGLVMAGHEDRCVQVVQAAV 287
EA E K + Y P + L P+ AV ++ + +AG DR + + A
Sbjct: 420 EAAEATPKKTPEDYDRCVYGPFLRLSTPSRLSAVTILGTLSSTAIAG-VDRGMPISIAIS 478
Query: 288 HIGMAIEQEIRIHSFLE---KTKNYKRKKIIADTEEVLSKEKELLRKRVNSLIKSKRVME 344
++ E++IR K+K R+ I+ E S E E
Sbjct: 479 NLARLAEEDIRAQLAANQKLKSKPKSRRVIMTKRERKTSPE------------------E 520
Query: 345 AQKLLKNEETK-------PWGRDTQAKLGSRLVELLIETAYV----QHPVNPADYSPPDV 393
KLL + E K PW +AK+G+ L+ LIETA + +HP S
Sbjct: 521 PAKLLSDSEAKASPIPDTPWPPAVKAKVGAALLSALIETAKIKVVKEHPETKTLIS--QF 578
Query: 394 RPAFRHRFKTILKHPGQKTTKRYGVVECDPLVLEGLDRSAK-HMLIPYVPMLVPPKKWKG 452
+PAF H + K K+ G++ + ++ + R + L ++PM+V P+ W+
Sbjct: 579 QPAFSHVSQL-------KRGKKIGMMLLNKELVNLMKREPQGDYLAKHLPMVVEPEPWQA 631
Query: 453 YNKGGYLFLPSYVMRTHGSRKQQEALK--SVTGNCMKKVFEALDTLGSTKWRVNKQVLSV 510
++KGG+L + ++R K Q+ ++ M +VF+ LD LG T WRVN VL+V
Sbjct: 632 FDKGGFLESRANLVRIKQGGKDQKLYSEAAIARGDMDQVFKGLDVLGKTAWRVNTPVLNV 691
Query: 511 LESIWVSGGNIAGLVDRN-DVLIPEKP-LSEDMTEVQKWKWSVRKAKKINQER---HSQR 565
+ W +G +A L N D+ +P +P S+D + W VR K + ER HS R
Sbjct: 692 MLEAWNTGEALANLPALNPDIPVPPEPEASDDPMAHRNW---VRAVKAADNERGGLHSVR 748
Query: 566 CDTELKLSVARRMKDEEGFYYPHNLDFRGRAYPMHPHLNHLSSDVCRGVLEFAEGRPLGK 625
C +L +AR +++ FY+PHN+DFRGRAYP+ +LNH+ +D RG+L FA G+ LG+
Sbjct: 749 CFMNFQLEIARAFRNQT-FYFPHNIDFRGRAYPLPTYLNHMGADHVRGILRFARGKELGE 807
Query: 626 SGLRWLKIHLANLFSGGVEKLSHDGRLAFVENHLYEIFDSAENPINGSRWWLTAEDPFQC 685
GL+WLK+HLAN+F G +K S R +F ++L IFDSA P++G+RWWL AEDP+QC
Sbjct: 808 DGLKWLKVHLANVF--GFDKASLKDRESFAMDNLVNIFDSANKPLDGNRWWLKAEDPWQC 865
Query: 686 LAACINLSEALKSSSPHSVISHLPIHQDGSCNGLQHYAALGRNTLEAAAVNLVAGEKPAD 745
LA C L AL+S P +SHLPIHQDG+CNGLQHYAALG ++ A VNL G+KPAD
Sbjct: 866 LAVCYELKAALESPEPTKFVSHLPIHQDGTCNGLQHYAALGGDSWGARQVNLEPGDKPAD 925
Query: 746 VYSEIAVRVHEIMKRDSNKDPSKHPQALLAKILIDQVDRKLVKQTVMTSVYGVTFVGARE 805
VYS +A V E + +D+ + ++ ++ RK+VKQTVMT+VYGVTF GA++
Sbjct: 926 VYSAVANIVKEHIAKDAEAGNA------FGLVMNGKITRKVVKQTVMTNVYGVTFAGAKK 979
Query: 806 QIKRRL--------EEKGHITDDRQLFAAACYAAKVTLTALGEIFEAARSIMGWLGDCA- 856
Q+ ++L EE G + A Y A + AL +F A I WLG+
Sbjct: 980 QVCKQLDALYPNLYEESGFSS-----IVLASYVATLVFKALSSMFGGAHDIQHWLGEIGG 1034
Query: 857 -------------------------------------KVIASENQPVRWTTPLGLPVVQP 879
++A + WTTPL +P+ QP
Sbjct: 1035 RVCRALSAEQLERISNDNLLPSPSKTARAGDKKTTTDDLLAQFRATIVWTTPLRMPIAQP 1094
Query: 880 YCKNERHLIRTSLQVLALQ--REGNLVKIRKQRTAFPPNFVHSLDGSHMMMTAVACRDAG 937
Y K+ +I+TSLQ L+L + V +KQ AFPPNF+HSLD +HM+++A+ C + G
Sbjct: 1095 YRKSGTRIIKTSLQELSLTVPERSDPVHRKKQLQAFPPNFIHSLDATHMLLSALECHELG 1154
Query: 938 LHFAGL 943
L FA +
Sbjct: 1155 LDFAAV 1160
>gi|429848594|gb|ELA24058.1| DNA-directed RNA polymerase [Colletotrichum gloeosporioides Nara gc5]
Length = 1383
Score = 436 bits (1122), Expect = e-119, Method: Compositional matrix adjust.
Identities = 249/654 (38%), Positives = 364/654 (55%), Gaps = 76/654 (11%)
Query: 344 EAQKLLKNEETK-------PWGRDTQAKLGSRLVELLIETAYV----QHPVNPADYSPPD 392
EA+ LL N+ + PW + KLG+ L+ L+ETA + + PV
Sbjct: 522 EAEPLLGNDSARDKRLVEAPWPVAVKVKLGAMLLTALLETAKIKVVQEQPVTQTLIH--Q 579
Query: 393 VRPAFRHRFKTILKHPGQKTTKRYGVVECDPLVLEGLDRSAK-HMLIPYVPMLVPPKKWK 451
+PAF H + K K+ G++ + ++ + + L ++PM+VPP+ W
Sbjct: 580 YQPAFSHALRL-------KRGKKIGMILLNKTLVTIMKSEPRGDYLAKHLPMVVPPEPWT 632
Query: 452 GYNKGGYLFLPSYVMRTHGSRKQQE--ALKSVTGNCMKKVFEALDTLGSTKWRVNKQVLS 509
+NKGG+L S V+R K+Q+ A ++T M +VF+ LD LG T WR+N V +
Sbjct: 633 DFNKGGFLESSSAVVRVKQGDKEQKLYAEAAITRGDMDQVFKGLDILGKTAWRINTPVFN 692
Query: 510 VLESIWVSGGNIAGLVDRN-DVLIPEKP-LSEDMTEVQKWKWSVRKAKKINQERHSQRCD 567
V+ W +G A + + D+ P +P LS+D + W +V+ + HSQRC
Sbjct: 693 VMLEAWNTGKAFANFPELSPDIAYPPEPELSDDPMARRNWIRTVKAIENKKGALHSQRCF 752
Query: 568 TELKLSVARRMKDEEGFYYPHNLDFRGRAYPMHPHLNHLSSDVCRGVLEFAEGRPLGKSG 627
+L +AR +++ FY+PHN+DFRGRAYP+ +LNH+ +D RG+L FA+G+ LG+ G
Sbjct: 753 MNFQLEIARAFRNQ-SFYFPHNVDFRGRAYPLPTYLNHMGADHVRGLLRFAKGKELGERG 811
Query: 628 LRWLKIHLANLFSGGVEKLSHDGRLAFVENHLYEIFDSAENPINGSRWWLTAEDPFQCLA 687
L+WLK+HLAN++ G +K S R +F +L IFDSA NP+ G+ WWL AEDP+QCLA
Sbjct: 812 LQWLKVHLANVY--GFDKASLKDRESFAMENLVNIFDSANNPLTGNMWWLKAEDPWQCLA 869
Query: 688 ACINLSEALKSSSPHSVISHLPIHQDGSCNGLQHYAALGRNTLEAAAVNLVAGEKPADVY 747
C L AL+S P +SHLP+HQDG+CNGLQHYAALG +T A VNL +KPADVY
Sbjct: 870 TCYELKAALESPEPTKYVSHLPVHQDGTCNGLQHYAALGGDTWGAEQVNLAPSDKPADVY 929
Query: 748 SEIAVRVHEIMKRDSNKDPSKHPQALLAKILIDQVDRKLVKQTVMTSVYGVTFVGAREQI 807
S +A V + + +D KHP +A L ++ RK+VKQTVMT+VYGVTF GAR+QI
Sbjct: 930 SAVANIVKDHIAKDVE---VKHP---IAMGLNGKITRKVVKQTVMTNVYGVTFAGARKQI 983
Query: 808 KRRLE-------EKGHITDDRQLFAAACYAAKVTLTALGEIFEAARSIMGWLGDCAKVIA 860
++L+ E+ + + +A Y A + AL +F+ A I WLG+ +
Sbjct: 984 CKQLDALYPELREETGVNN----LTSATYIAGLVFKALSTMFKGAHDIQYWLGEIGGRVC 1039
Query: 861 SENQP-----------------------------VRWTTPLGLPVVQPYCKNERHLIRTS 891
P + WTTPL +PV QPY K+ +I T+
Sbjct: 1040 KAVTPEQIELISQDGLSEASKVSRSDMLSQFRATIVWTTPLRMPVAQPYRKHGTRIIHTA 1099
Query: 892 LQVLALQ--REGNLVKIRKQRTAFPPNFVHSLDGSHMMMTAVACRDAGLHFAGL 943
LQ ++ + V +KQ AFPPNF+HSLD +HM+++A+ C + GL FA +
Sbjct: 1100 LQDMSFTVPERSDPVHAKKQLQAFPPNFIHSLDATHMLLSALECNELGLDFAAV 1153
>gi|340516609|gb|EGR46857.1| predicted protein [Trichoderma reesei QM6a]
Length = 1298
Score = 436 bits (1121), Expect = e-119, Method: Compositional matrix adjust.
Identities = 283/836 (33%), Positives = 432/836 (51%), Gaps = 102/836 (12%)
Query: 178 LRRRQVKQETEAWERMVDEYKELEAKMIEKRLAPNLPHIKGL----FLGWFGPLSEAIER 233
L R + E W + K L+ + + LAP+ H +G W + I +
Sbjct: 276 LERDTISSAIEKWRL---DNKTLQKRGVTTALAPS--HKEGSMSQNLASWMSAMETRIYQ 330
Query: 234 EQKM---QRTKKQKA-------AYAPHIELLPADKVAVIVMHKMMGLVMAGHEDRCVQVV 283
E ++ KK K+ Y P I+ ++A + + ++ L ++ + +
Sbjct: 331 ELRLIEQSEAKKSKSDKDLTRCIYGPFIQQGDPARLAAVTILSVINLGTVLGVEKGLPIS 390
Query: 284 QAAVHIGMAIEQEIRIHSFLEKTKNYKRKKIIADTEEVLSKEKELLRKRVNSLIKSKR-- 341
+ HI A++++I ++ +K +R + V K+K K+ +S K
Sbjct: 391 RLITHIAKAVQEDIEMY---QKELAERRARRERKLRFVGGKDKA--SKKASSKDAGKEEE 445
Query: 342 ------VMEAQKLLKNEETKPWGRDTQAKLGSRLVELLIETAYVQHPVNPADYSP--PDV 393
E Q ++ PW +A++GS L+++L+E+A + V ++
Sbjct: 446 PPVLVDTTEQQSAMEENSRSPWSLQIKAQVGSILLQMLMESAKINVVVERSESKELISQY 505
Query: 394 RPAFRHRFKTILKHPGQKTTKRYGVVECDPLVLEGLDRS-AKHMLIPYVPMLVPPKKWKG 452
+PAF H +++L+ K+ G + + ++E L R + ++PM+V PK W+
Sbjct: 506 QPAFNH--QSVLRK-----GKKVGALFFNTRLVEQLKREPVGDFIAKHIPMVVEPKPWQS 558
Query: 453 YNKGGYLFLPSYVMRTHGSRKQQEALK--SVTGNCMKKVFEALDTLGSTKWRVNKQVLSV 510
+ +GG+L + +R +Q+ ++ M +VF+ LD LG T W +NK L+V
Sbjct: 559 FTEGGFLDSTTSFVRVKPGDVEQKLYSNAAIKRGDMTQVFKGLDVLGKTPWIINKDTLNV 618
Query: 511 LESIWVSGGNIAGLVDRN-DVLIPEKPLSEDMTEVQKWKWSVRKAKKINQER---HSQRC 566
+ W SG IA + N ++ IP +P S V+K W +R K I ER HSQRC
Sbjct: 619 MMEAWNSGEEIANIPPLNPNLTIPPEPDSSADPLVRK-NW-IRAVKAIENERSGLHSQRC 676
Query: 567 DTELKLSVARRMKDEEGFYYPHNLDFRGRAYPMHPHLNHLSSDVCRGVLEFAEGRPLGKS 626
L+L +AR +++ Y+PHN+D+RGRAYPM +LNH+ +D R +L+FA G+ LG
Sbjct: 677 FMNLQLEIARAFRNQT-IYFPHNVDYRGRAYPMPTYLNHMGADHARAILKFARGKELGVR 735
Query: 627 GLRWLKIHLANLFSGGVEKLSHDGRLAFVENHLYEIFDSAENPINGSRWWLTAEDPFQCL 686
GLRWLKIHLAN++ G++K S D R AF + ++ I DSA NP+NGSRWWL EDP+QCL
Sbjct: 736 GLRWLKIHLANVY--GLDKASFDEREAFADENVANIIDSATNPLNGSRWWLKGEDPWQCL 793
Query: 687 AACINLSEALKSSSPHSVISHLPIHQDGSCNGLQHYAALGRNTLEAAAVNLVAGEKPADV 746
+AC L AL+ P +SHLP+HQDG+CNGLQHYAALG +T A VNL G++PADV
Sbjct: 794 SACFELKAALELPDPTKFVSHLPVHQDGTCNGLQHYAALGGDTWGAKQVNLEPGDRPADV 853
Query: 747 YSEIAVRVHEIMKRDSNKDPSKHPQALLAKILIDQVDRKLVKQTVMTSVYGVTFVGAREQ 806
YS +A V + + +D K A+ L ++ RK+VKQTVMT+VYGVTF GA++Q
Sbjct: 854 YSAVADLVKQAIAKD------KENGNAFAEALDGKITRKVVKQTVMTNVYGVTFSGAKKQ 907
Query: 807 IKRRLE-------EKGHITDDRQLFAAACYAAKVTLTALGEIFEAARSIMGWLGDCAKVI 859
I ++++ EK I++ + Y AK AL +F+ A I WLG+ +
Sbjct: 908 ICKQIDALYPDLGEKVGISN----MLLSTYIAKQVFQALATMFKGAHDIQYWLGEIGGRV 963
Query: 860 ASENQP------------------------------VRWTTPLGLPVVQPYCKNERHLIR 889
P V WTTPL +PVVQPY K I+
Sbjct: 964 CRALTPAQLQQIARKSATTARKKVEFDDLVQQFRSSVVWTTPLRMPVVQPYRKTTAREIK 1023
Query: 890 TSLQ--VLALQREGNLVKIRKQRTAFPPNFVHSLDGSHMMMTAVACRDAGLHFAGL 943
T LQ + + + + V RKQ FPPNF+HSLD SHM+++A+ C GL FA +
Sbjct: 1024 TCLQAVIYPMSDQTDPVNRRKQLQGFPPNFIHSLDASHMLLSALECHARGLDFAAV 1079
>gi|240274975|gb|EER38490.1| mitochondrial DNA-directed RNA polymerase [Ajellomyces capsulatus
H143]
Length = 1265
Score = 436 bits (1121), Expect = e-119, Method: Compositional matrix adjust.
Identities = 251/634 (39%), Positives = 348/634 (54%), Gaps = 63/634 (9%)
Query: 357 WGRDTQAKLGSRLVELLIETAYVQHPVNPADYSPPDVRPAFRHRFKTILKHPGQKTTKRY 416
W QAK+G+ L +L+ TA V PV D + + F+ + + + R
Sbjct: 433 WSPVVQAKIGACLASMLLSTATV--PVPTKDPKTNQQKQTDQAAFRRVYQ---LERGFRV 487
Query: 417 GVVECDPLVLEGLDRSA-KHMLIPYVPMLVPPKKWKGYNKGGYLFLPSYVMRT-HGSRKQ 474
G V + ++E L R +L ++PM+ PP+ W GG+L PS VMR G Q
Sbjct: 488 GYVHANDYIVEKLRREPLGELLAKHLPMVCPPRPWTSARGGGFLEYPSTVMRVKQGDISQ 547
Query: 475 QEALKSVTGNC-MKKVFEALDTLGSTKWRVNKQVLSVLESIWVSGGNIAGLVDRN-DVLI 532
+++ + VF L LG T W++N+ VL+V+ W SG IA L N +++
Sbjct: 548 LSYVETAAARGDLDTVFAGLTVLGKTGWKINRGVLNVMLEAWNSGEEIANLAPENPNIIE 607
Query: 533 PEKPLSEDMTEVQKWKWSVRKAKKINQERHSQRCDTELKLSVARRMKDEEGFYYPHNLDF 592
PEKP ++D ++ + + A HSQRC +L +AR ++E FY PHNLDF
Sbjct: 608 PEKPDTDDRDILKDYYRARMHATNARTGYHSQRCFQNFQLEIARAYRNET-FYLPHNLDF 666
Query: 593 RGRAYPMHPHLNHLSSDVCRGVLEFAEGRPLGKSGLRWLKIHLANLFSGGVEKLSHDGRL 652
RGRAYPM P+ N + +D CRG+L F++GR LG SGLRWLKIHLAN+F G +K S R
Sbjct: 667 RGRAYPMPPYFNQMGADHCRGLLLFSKGRELGASGLRWLKIHLANVF--GFDKASFQERE 724
Query: 653 AFVENHLYEIFDSAENPINGSRWWLTAEDPFQCLAACINLSEALKSSSPHSVISHLPIHQ 712
F +HL +I DSA N + G RWWL A DPFQCLAACI L+ A+ P +SHLP+HQ
Sbjct: 725 QFAMDHLEDIRDSAINGLKGKRWWLDAGDPFQCLAACIELTNAMALEDPTKYVSHLPVHQ 784
Query: 713 DGSCNGLQHYAALGRNTLEAAAVNLVAGEKPADVYSEIAVRVHEIMKRDSNKDPSKHPQA 772
DGSCNGLQHYAALG + + A VNL ++P+D+Y+ +A V + +++D+ K
Sbjct: 785 DGSCNGLQHYAALGGDVIGAQQVNLEPSDRPSDIYTGVAEHVKQSIQKDAAKGNET---- 840
Query: 773 LLAKILIDQVDRKLVKQTVMTSVYGVTFVGAREQIKRRLEEKGHITDDRQLFAA---ACY 829
AK+L D++ RK+VKQTVMT+VYGVTF+GA Q++++L + H D A A Y
Sbjct: 841 --AKLLEDKITRKIVKQTVMTNVYGVTFLGAIRQVRKQLVD--HYPDLLHSGVAGECATY 896
Query: 830 AAKVTLTALGEIFEAARSIMGWLGDCAKVIASE--------------------------- 862
A+ ALG +F A I WLGDCA I+
Sbjct: 897 IARKIFVALGSMFTGAHDIQFWLGDCANRISQSLSSEQIEALSDERNLKVVGRFQGAKKL 956
Query: 863 -----------NQPVRWTTPLGLPVVQPYCKNERHLIRTSLQVLALQ--REGNLVKIRKQ 909
V WTTPL LPV QPY + + LQ L+++ + ++V RKQ
Sbjct: 957 AKNIKDPKSHFKSTVVWTTPLKLPVAQPYRDAACVKVFSDLQQLSIRNPQASDVVNKRKQ 1016
Query: 910 RTAFPPNFVHSLDGSHMMMTAVACRDAGLHFAGL 943
AFPPNFVHSLD +HM ++AV C + GL F+ +
Sbjct: 1017 LQAFPPNFVHSLDATHMFLSAVKCDELGLSFSAV 1050
>gi|254566053|ref|XP_002490137.1| Mitochondrial RNA polymerase [Komagataella pastoris GS115]
gi|238029933|emb|CAY67856.1| Mitochondrial RNA polymerase [Komagataella pastoris GS115]
Length = 1321
Score = 435 bits (1119), Expect = e-119, Method: Compositional matrix adjust.
Identities = 276/844 (32%), Positives = 434/844 (51%), Gaps = 74/844 (8%)
Query: 155 LKGLYKRIKLQEYREMKKRKFNLLRRRQVKQET-----EAWERMVDEYKELEAKMIEKRL 209
+K L K + QE E +N R+R ++ ++ WE+ ++++KE + +
Sbjct: 337 IKKLLKTPQQQEDFEKFLDAYNAERQRLLEFQSLDGAKRKWEQTLEDFKESNVVNVPSKS 396
Query: 210 APN---------LPHIK--------GLFLGWFGPLSEAIEREQKMQRTK-KQKAAYAPHI 251
N LP IK L + G L+ + M+R ++ YA ++
Sbjct: 397 IKNYLWKWHSKLLPLIKEEVLKCQKTLSIIGAGNLNSYKTKLSTMERKAFNERLEYANYL 456
Query: 252 ELLPADKVAVIVMHKMMGLVMAGHEDRCVQVVQAAVHIGMAIEQEIRIHSFLEKT----K 307
L+ DK++ + + +++ ++ G ++ +A + +G A+E E R L K K
Sbjct: 457 ILVSPDKMSTLTILELLKIIFTGKNTTGIRTARAVISVGKAVELEYRSERLLSKEIDVFK 516
Query: 308 NYKRKKIIADTEEVLSKEKELLRKRVNSLIKSKRVMEAQKLLKNEETKPWGRDTQAKLGS 367
N++ K + + +++ + L++ R L+ E W + +AK+GS
Sbjct: 517 NFRNMKNSKEFKRLVTTGS---KNTFTKLLQQSRSASIDTELE-ETLFNWPNEIKAKIGS 572
Query: 368 RLVELLIETAYVQHPVNPADYSPPDVRPAFRHRFKTILKHPGQKTTKRYGVVECDPLVLE 427
L+ LL+++A + V D P + I + G+++
Sbjct: 573 VLISLLLQSAKID--VQGKD---PITNEEVHGQVPAIFHQYQYANGNKIGILKFHHDFTS 627
Query: 428 GL--DRSAKHMLIPYVPMLVPPKKWKGYNKGGYLFLPSYVMRTHGSRKQQEALKSVT-GN 484
L D + + Y+PMLV PK W +N GGY + + ++RT S +Q +K+ + N
Sbjct: 628 KLSKDNLSGAVQPQYLPMLVRPKPWLSHNLGGYYYTETSLIRTKDSPEQLAYVKAASENN 687
Query: 485 CMKKVFEALDTLGSTKWRVNKQVLSVLESIWVSGGNIAGL--VDRNDVLIPEKPLSEDMT 542
+ KV++ L LG+T W +N ++ +V+ +W SG + + + + P+ P D +
Sbjct: 688 TIDKVYQGLTVLGNTPWTINSEIFNVISEVWNSGNQFLDIPAIQDSPIYPPQPPSDADPS 747
Query: 543 EVQKWKWSVRKAKKINQERHSQRCDTELKLSVARRMKDEEGFYYPHNLDFRGRAYPMHPH 602
++ WK+ VRK S RCD KL AR E Y+PHNLDFRGRAYP+ PH
Sbjct: 748 VIRDWKYQVRKVSNKFSSDRSMRCDANYKLETARGFIGER-IYFPHNLDFRGRAYPISPH 806
Query: 603 LNHLSSDVCRGVLEFAEGRPLGKSGLRWLKIHLANLFSGGVEKLSHDGRLAFVENHLYEI 662
LNHL +D+ RG+L F EG+ LG+ GLRWLKIHLANL+ G++K + D R F + + I
Sbjct: 807 LNHLGNDMSRGLLLFWEGKELGERGLRWLKIHLANLY--GLDKETLDKREQFTDLNKANI 864
Query: 663 FDSAENPINGSRWWLTAEDPFQCLAACINLSEALKSSSPHSVISHLPIHQDGSCNGLQHY 722
DSA P+ G WW ++E P+Q L+ CI L+EA K +P+ +SH+P+HQDG+CNGLQHY
Sbjct: 865 IDSATKPLAGKGWWKSSEKPWQTLSVCIELAEAWKLKNPNMFVSHIPVHQDGTCNGLQHY 924
Query: 723 AALGRNTLEAAAVNLVAGEKPADVYSEIAVRVHEIMKRDSNKDPSKHPQALLAKILIDQV 782
AALG + A VNL+ KP DVYS +A +++++ + D + Q LA L +
Sbjct: 925 AALGGDVEGATQVNLMPDNKPNDVYSYVA----KLVQKRVDIDATNGHQ--LALKLQRHI 978
Query: 783 DRKLVKQTVMTSVYGVTFVGAREQIKRRLEEKGHITDDRQLFAAACYAAKVTLTALGEIF 842
RK+VKQTVMTSVYGVT++GA +QI RRL+E DD A Y A +++ E+F
Sbjct: 979 KRKVVKQTVMTSVYGVTYIGASDQIDRRLKEIFG-DDDPDTHVAGRYLALQVFSSIRELF 1037
Query: 843 EAARSIMGWLGDCAKVIASENQ---------------------PVRWTTPLGLPVVQPYC 881
A I WL + +K I + V WT+PLGLP+VQPY
Sbjct: 1038 TGAHQIQDWLAEASKKITKSIRMDIDTSMTKKSSKSAKISHLASVIWTSPLGLPIVQPYR 1097
Query: 882 KNERHLIRTSLQVLALQREGNL--VKIRKQRTAFPPNFVHSLDGSHMMMTAVACRDAGLH 939
+ + T+LQ + + + V RKQ AFPPN++HSLD SHM+++++ C L
Sbjct: 1098 SIGKKQVATNLQTVFISDPHAVSPVDSRKQTNAFPPNYIHSLDASHMLLSSIECGQRRLS 1157
Query: 940 FAGL 943
FA +
Sbjct: 1158 FAAV 1161
>gi|328350537|emb|CCA36937.1| DNA-directed RNA polymerase,mitochondrial [Komagataella pastoris CBS
7435]
Length = 1329
Score = 435 bits (1119), Expect = e-119, Method: Compositional matrix adjust.
Identities = 276/844 (32%), Positives = 434/844 (51%), Gaps = 74/844 (8%)
Query: 155 LKGLYKRIKLQEYREMKKRKFNLLRRRQVKQET-----EAWERMVDEYKELEAKMIEKRL 209
+K L K + QE E +N R+R ++ ++ WE+ ++++KE + +
Sbjct: 345 IKKLLKTPQQQEDFEKFLDAYNAERQRLLEFQSLDGAKRKWEQTLEDFKESNVVNVPSKS 404
Query: 210 APN---------LPHIK--------GLFLGWFGPLSEAIEREQKMQRTK-KQKAAYAPHI 251
N LP IK L + G L+ + M+R ++ YA ++
Sbjct: 405 IKNYLWKWHSKLLPLIKEEVLKCQKTLSIIGAGNLNSYKTKLSTMERKAFNERLEYANYL 464
Query: 252 ELLPADKVAVIVMHKMMGLVMAGHEDRCVQVVQAAVHIGMAIEQEIRIHSFLEKT----K 307
L+ DK++ + + +++ ++ G ++ +A + +G A+E E R L K K
Sbjct: 465 ILVSPDKMSTLTILELLKIIFTGKNTTGIRTARAVISVGKAVELEYRSERLLSKEIDVFK 524
Query: 308 NYKRKKIIADTEEVLSKEKELLRKRVNSLIKSKRVMEAQKLLKNEETKPWGRDTQAKLGS 367
N++ K + + +++ + L++ R L+ E W + +AK+GS
Sbjct: 525 NFRNMKNSKEFKRLVTTGS---KNTFTKLLQQSRSASIDTELE-ETLFNWPNEIKAKIGS 580
Query: 368 RLVELLIETAYVQHPVNPADYSPPDVRPAFRHRFKTILKHPGQKTTKRYGVVECDPLVLE 427
L+ LL+++A + V D P + I + G+++
Sbjct: 581 VLISLLLQSAKID--VQGKD---PITNEEVHGQVPAIFHQYQYANGNKIGILKFHHDFTS 635
Query: 428 GL--DRSAKHMLIPYVPMLVPPKKWKGYNKGGYLFLPSYVMRTHGSRKQQEALKSVT-GN 484
L D + + Y+PMLV PK W +N GGY + + ++RT S +Q +K+ + N
Sbjct: 636 KLSKDNLSGAVQPQYLPMLVRPKPWLSHNLGGYYYTETSLIRTKDSPEQLAYVKAASENN 695
Query: 485 CMKKVFEALDTLGSTKWRVNKQVLSVLESIWVSGGNIAGL--VDRNDVLIPEKPLSEDMT 542
+ KV++ L LG+T W +N ++ +V+ +W SG + + + + P+ P D +
Sbjct: 696 TIDKVYQGLTVLGNTPWTINSEIFNVISEVWNSGNQFLDIPAIQDSPIYPPQPPSDADPS 755
Query: 543 EVQKWKWSVRKAKKINQERHSQRCDTELKLSVARRMKDEEGFYYPHNLDFRGRAYPMHPH 602
++ WK+ VRK S RCD KL AR E Y+PHNLDFRGRAYP+ PH
Sbjct: 756 VIRDWKYQVRKVSNKFSSDRSMRCDANYKLETARGFIGER-IYFPHNLDFRGRAYPISPH 814
Query: 603 LNHLSSDVCRGVLEFAEGRPLGKSGLRWLKIHLANLFSGGVEKLSHDGRLAFVENHLYEI 662
LNHL +D+ RG+L F EG+ LG+ GLRWLKIHLANL+ G++K + D R F + + I
Sbjct: 815 LNHLGNDMSRGLLLFWEGKELGERGLRWLKIHLANLY--GLDKETLDKREQFTDLNKANI 872
Query: 663 FDSAENPINGSRWWLTAEDPFQCLAACINLSEALKSSSPHSVISHLPIHQDGSCNGLQHY 722
DSA P+ G WW ++E P+Q L+ CI L+EA K +P+ +SH+P+HQDG+CNGLQHY
Sbjct: 873 IDSATKPLAGKGWWKSSEKPWQTLSVCIELAEAWKLKNPNMFVSHIPVHQDGTCNGLQHY 932
Query: 723 AALGRNTLEAAAVNLVAGEKPADVYSEIAVRVHEIMKRDSNKDPSKHPQALLAKILIDQV 782
AALG + A VNL+ KP DVYS +A +++++ + D + Q LA L +
Sbjct: 933 AALGGDVEGATQVNLMPDNKPNDVYSYVA----KLVQKRVDIDATNGHQ--LALKLQRHI 986
Query: 783 DRKLVKQTVMTSVYGVTFVGAREQIKRRLEEKGHITDDRQLFAAACYAAKVTLTALGEIF 842
RK+VKQTVMTSVYGVT++GA +QI RRL+E DD A Y A +++ E+F
Sbjct: 987 KRKVVKQTVMTSVYGVTYIGASDQIDRRLKEIFG-DDDPDTHVAGRYLALQVFSSIRELF 1045
Query: 843 EAARSIMGWLGDCAKVIASENQ---------------------PVRWTTPLGLPVVQPYC 881
A I WL + +K I + V WT+PLGLP+VQPY
Sbjct: 1046 TGAHQIQDWLAEASKKITKSIRMDIDTSMTKKSSKSAKISHLASVIWTSPLGLPIVQPYR 1105
Query: 882 KNERHLIRTSLQVLALQREGNL--VKIRKQRTAFPPNFVHSLDGSHMMMTAVACRDAGLH 939
+ + T+LQ + + + V RKQ AFPPN++HSLD SHM+++++ C L
Sbjct: 1106 SIGKKQVATNLQTVFISDPHAVSPVDSRKQTNAFPPNYIHSLDASHMLLSSIECGQRRLS 1165
Query: 940 FAGL 943
FA +
Sbjct: 1166 FAAV 1169
>gi|296424611|ref|XP_002841841.1| hypothetical protein [Tuber melanosporum Mel28]
gi|295638090|emb|CAZ86032.1| unnamed protein product [Tuber melanosporum]
Length = 1416
Score = 434 bits (1116), Expect = e-118, Method: Compositional matrix adjust.
Identities = 281/838 (33%), Positives = 443/838 (52%), Gaps = 91/838 (10%)
Query: 162 IKLQEYR-EMKKRKFNLLRRRQVKQET--EAWERMVDEYKELEAKMIEKRLAPNLPHIKG 218
+ QEY + ++F + R++ +++ A ER +++ L + + K+ A I
Sbjct: 337 MPFQEYDINLNDKEFQIERQKLLEEHAFDSARERWKRDFESLSERGVIKQDA----EINS 392
Query: 219 LFLGWFGPL----SEAIEREQKMQRTKKQKAA------YAPHIELLPADKVAVIVMHKMM 268
L W L E ++R Q + + + A Y P + ++ +K+A I + +++
Sbjct: 393 LLWEWHQALVPLIHEELKRVQHAEESGTKAAGAVDRCFYGPFMRVIEPEKLAAITIIELL 452
Query: 269 GLVMAGHEDRCVQVVQAAVHIGMAIEQEIRIHSFLEKTKNYKRKKIIADTEEVLSKEKEL 328
++ +A + +G +E E + ++ + E + +++
Sbjct: 453 RTHTLNGVGAGLKASRAVLQLGREVELEYQAQEVAKQRGEGFFANMSKAELETIFRDRSA 512
Query: 329 LRKRVNSLIKSKRVMEAQKLLKNEETKPWGRDTQAKLGSRLVELLIETAYVQHPVNPADY 388
R N + KSK + L EE W + KLG L+ +LI A + P +
Sbjct: 513 FR---NLISKSKSASD----LDFEEIPEWPNTVKVKLGGVLISMLIHVARI-----PVEA 560
Query: 389 SPPDVR-------------PAFRHRFKTILKHPGQKTTKRYGVVECDPLVLE--GLDRSA 433
+ P + PAF+H ++ + ++ GVV+ P +++ G D
Sbjct: 561 AVPGLTEGTESSEKIVQHLPAFQHCYE-------YQRGRKLGVVKLHPELVKRLGTDDLN 613
Query: 434 KHMLIPYVPMLVPPKKWKGYNKGGYLFLPSYVMRTHGSRKQQEALKSVTGNC-MKKVFEA 492
+ +PM+V P W +++GGY + S V+R S +Q++ +K+ + +F
Sbjct: 614 FTAIGKSLPMVVRPLPWTDWDEGGYFYTRSKVVRIRESVEQRQYVKAAAERGHLDHLFAG 673
Query: 493 LDTLGSTKWRVNKQVLSVLESIWVSGGNIAGLVDRN-DVLIPEKPLSEDMTEVQKWKWSV 551
LD LG T WR+N++V V+ +W A + N D+ P +P +V +W+W+
Sbjct: 674 LDVLGRTAWRINRRVFDVVLEVWNQEKAFAKIPALNPDINFPLEPEPNADPKV-RWEWA- 731
Query: 552 RKAKKINQER---HSQRCDTELKLSVARRMKDEEGFYYPHNLDFRGRAYPMHPHLNHLSS 608
R+ K++N R HS RCD K+ +AR EE FY+PHN+DFRGRAYP+ P+LNH+ +
Sbjct: 732 REMKRVNTARKNNHSTRCDVNFKVEIARAFLFEE-FYFPHNIDFRGRAYPIPPNLNHIGN 790
Query: 609 DVCRGVLEFAEGRPLGKSGLRWLKIHLANLFSGGVEKLSHDGRLAFVENHLYEIFDSAEN 668
D+ RG+L F+E + +G++GLRW+KIHLANL G +K S R+AF E ++ I DSAEN
Sbjct: 791 DLSRGLLMFSEAKEVGETGLRWMKIHLANL--AGYDKASFSQRVAFTEENIENIHDSAEN 848
Query: 669 PINGSRWWLTAEDPFQCLAACINLSEALKSSSPHSVISHLPIHQDGSCNGLQHYAALGRN 728
P+ G+RWWL ++DP+Q LA+C L+EAL ++PH H+P+ QDG+CNGLQHYAALG +
Sbjct: 849 PLTGNRWWLKSDDPWQLLASCFALNEALSLNNPHEYKCHIPVAQDGTCNGLQHYAALGGD 908
Query: 729 TLEAAAVNLVAGEKPADVYSEIAVRVHEIMKRDSNKDPSKHPQALLAKILIDQVDRKLVK 788
A VNL + P DVY+ +A E++K D + A +A L D V RK+VK
Sbjct: 909 VAGARQVNLEPSDLPQDVYTGVA----ELVKASVELDAKRGLPAAVA--LKDLVTRKVVK 962
Query: 789 QTVMTSVYGVTFVGAREQIKRRLEEKGHITDDRQLFAAACYAAKVTLTALGEIFEAARSI 848
QTVMT+VYGVTF+GAR QI+ +L+ + D + + A + Y K ++ E+F A +I
Sbjct: 963 QTVMTNVYGVTFIGARNQIENQLKCIESL-DQKDIPALSLYLTKKVFDSIQEMFTGASAI 1021
Query: 849 MGWLGDCAKVIASENQP---------------------VRWTTPLGLPVVQPYCKNERHL 887
WL CAK I+ +P V WTTPL LPVVQPY +
Sbjct: 1022 QDWLVTCAKRISRSVRPNQLEHLKDPKTGEDSVHFMTSVVWTTPLRLPVVQPYRQVASAA 1081
Query: 888 IRTSLQVLALQREGNLVKI--RKQRTAFPPNFVHSLDGSHMMMTAVACRDAGLHFAGL 943
I T+LQ + + + K+ RKQ TAFPPNF+HSLD SHM+++A+ C +GL FA +
Sbjct: 1082 ISTNLQTVYINDPYVIDKVDSRKQMTAFPPNFIHSLDASHMLLSALNCDASGLTFASV 1139
>gi|438813|gb|AAA33587.1| mitochondrial RNA polymerase [Neurospora crassa]
gi|1589165|prf||2210334A cyt-5 gene
Length = 1422
Score = 434 bits (1115), Expect = e-118, Method: Compositional matrix adjust.
Identities = 271/785 (34%), Positives = 411/785 (52%), Gaps = 99/785 (12%)
Query: 231 IEREQKMQRTKKQK-----AAYAPHI-ELLPADKVAVIVMHKMMGLVMAGHEDRCVQVVQ 284
+E E+ +KK K Y P I + P AV ++ + L M H+ + +
Sbjct: 420 VEVEKSEMVSKKNKDDLDRCIYGPFIRQSNPERLAAVTIISTLSSLAMRSHKGSTIASL- 478
Query: 285 AAVHIGMAIEQEIRIHSFLEKTKNYKRKKIIADTEEVLSKEKELLR-KRVNSLIKSKRVM 343
HI E++IR+ +K + K+ + + + +LR K + S +
Sbjct: 479 -ITHIAKFAEEDIRV----QKAEALISKRNLRKAKSKQHNPRSVLRFKNSTASAGSSDMA 533
Query: 344 EAQKLLKNEETKPWGRDTQAKLGSRLVELLIETAYV----QHPVNPADYSPPDVRPAFRH 399
++ + + + W + K+G+ L+ L++TA + + PV + +PAF H
Sbjct: 534 DSNNVAVEMDDEAWTTTIRTKVGAALLSALLDTAKITLVREDPVTKTLIT--QNQPAFSH 591
Query: 400 RFKTILKHPGQKTTKRYGVVECDPLVLEGLDRS-AKHMLIPYVPMLVPPKKWKGYNKGGY 458
+ + K+ G + + V+E L R L ++PM+ PP W + KG Y
Sbjct: 592 VMQL-------RKGKKIGTIIPNKAVVELLVREPVPDFLARHLPMVTPPDPWVSFEKGAY 644
Query: 459 LFLPSYVMRTHGSRKQQEALK--SVTGNCMKKVFEALDTLGSTKWRVNKQVLSVLESIWV 516
L + V+R ++Q ++ M +VF+ LD LG T W++N V V+ +W
Sbjct: 645 LETKTPVLRLKNGEREQRLYTEAAIARGDMDQVFKGLDVLGKTGWKINSPVFKVMLDVWN 704
Query: 517 SGGNIAGLVDRNDV--LIPEKPLSEDMTEVQKWKWSVRKAKKINQER---HSQRCDTELK 571
SG +A + + + L PE +ED T + W +++ K I ER SQRC +
Sbjct: 705 SGKQVANIPPLDPIFDLPPEPASTEDPTVKRAW---LKEIKVIENERSGFDSQRCFMNFQ 761
Query: 572 LSVARRMKDEEGFYYPHNLDFRGRAYPMHPHLNHLSSDVCRGVLEFAEGRPLGKSGLRWL 631
L +AR +D+ FY+PHN+DFRGRAYP+ P+LNH+ +D RG++ FA+G+PLG+SGLRWL
Sbjct: 762 LEIARAYRDQT-FYFPHNVDFRGRAYPIPPYLNHMGADHVRGLMLFAKGKPLGESGLRWL 820
Query: 632 KIHLANLFSGGVEKLSHDGRLAFVENHLYEIFDSAENPINGSRWWLTAEDPFQCLAACIN 691
K+HLAN++ G +K S R F + ++ I DS NP+NG++WWL AEDP+QCLA C
Sbjct: 821 KVHLANVY--GFDKASLQERQDFADENIENIRDSVNNPLNGNQWWLQAEDPWQCLATCFE 878
Query: 692 LSEALKSSSPHSVISHLPIHQDGSCNGLQHYAALGRNTLEAAAVNLVAGEKPADVYSEIA 751
L+ AL+ P +SHLPIHQDG+CNGLQHYAALG +T A VNLV G++PADVYS +A
Sbjct: 879 LAAALELEDPTKYVSHLPIHQDGTCNGLQHYAALGGDTWGAQQVNLVPGDRPADVYSAVA 938
Query: 752 VRVHEIMKRDSNKDPSKHPQALLAKILIDQVDRKLVKQTVMTSVYGVTFVGAREQIKRRL 811
V + ++ D KD AK + ++ RK+VKQTVMT+VYGVT+VGAR+Q+ +++
Sbjct: 939 KLVIKGIEDDLAKDNE------FAKAMHGKITRKVVKQTVMTNVYGVTYVGARKQVLKQI 992
Query: 812 EEK-GHITDDRQLFAA--ACYAAKVTLTALGEIFEAARSIMGWLGDCAKVIA-------- 860
E +IT + + AA A Y + A+ +F+ A I WLG+ +
Sbjct: 993 EAAYPNITAESGIEAALLASYVTQHIFRAMSTMFKGAHDIQNWLGEIGGRVCRALTPEQL 1052
Query: 861 -----SENQP-----------------------------------VRWTTPLGLPVVQPY 880
SE P + WTTPL +PVVQPY
Sbjct: 1053 DEFERSERSPHGDGTASGENITLAGNPRKSSAHKNDEILNNFQSTIIWTTPLRMPVVQPY 1112
Query: 881 CKNERHLIRTSLQ--VLALQREGNLVKIRKQRTAFPPNFVHSLDGSHMMMTAVACRDAGL 938
K+ + T +Q V+ + + V RKQ AFPPNF+HSLD SHM+++A+ C + GL
Sbjct: 1113 RKHGTKTVSTCMQDLVMTIPERSDPVNRRKQLQAFPPNFIHSLDASHMILSALHCDELGL 1172
Query: 939 HFAGL 943
FA +
Sbjct: 1173 TFAAV 1177
>gi|317136824|ref|XP_001727312.2| DNA-dependent RNA polymerase family protein [Aspergillus oryzae
RIB40]
Length = 1648
Score = 434 bits (1115), Expect = e-118, Method: Compositional matrix adjust.
Identities = 284/832 (34%), Positives = 430/832 (51%), Gaps = 85/832 (10%)
Query: 169 EMKKRKFNLLRRRQVKQET--EAWERMVDEYKELEAKMIEKRLAPNLPHIKGLFLGWFGP 226
E K +N LR+RQ++ ++ + ER E+ +++ ++ + + + W
Sbjct: 617 EEKLELYNQLRQRQLETDSIRTSLERWRQEFTQMQKSGLD--MTGGGKKLGTIMNQWHMG 674
Query: 227 LSEAIEREQKMQ--------RT--KKQKAAYAPHIELLPADKVAVIVMHKMMGLVMAGHE 276
L I+ E K+ RT +K++ Y ++ L +++A + + ++ G
Sbjct: 675 LVSRIQEELKLVDEAEANPIRTFEQKERYDYGVYLRSLDPERLAALTILAVISTFSRGGM 734
Query: 277 DRCVQVVQAAVHIGMAIEQEIRIHSFLEKTKNYKRKKIIADTEEVLSKEKELLRKRVNSL 336
++ ++V A IG ++ E+ L+K + +++ A E + ++K+ R +
Sbjct: 735 EKGIKVSAIATGIGKDLQDELIAEMTLKKQQTGDARRLKALREILAGRKKKDGRASWQKI 794
Query: 337 IKSKRVMEAQKLLKNEETKPWGRDTQAKLGSRLVELLIETAYV----QHPVNPADYSPPD 392
+ K + W +AK+G+ L+ L + V +HP D
Sbjct: 795 V--------HDFEKEDPAAIWPPRVKAKVGAVLMSFLFDVGKVPVLTEHPRT--DKKTIV 844
Query: 393 VRPAFRHRFKTILKHPGQKTTKRYGVVECDPLVLEGLDRS-AKHMLIPYVPMLVPPKKWK 451
++PAF+H ++ K+ G V P V++ + R +L +PM+ PK W
Sbjct: 845 MQPAFQHSYQI-------NWGKKSGYVHLHPEVVQIVAREPTADVLGRQLPMICKPKPWN 897
Query: 452 GYNKGGYLFLPSYVMR-THGSRKQQEALKS-VTGNCMKKVFEALDTLGSTKWRVNKQVLS 509
G GGY S ++R T G Q +K+ + N +++V E L+ LG T WR+N+ V
Sbjct: 898 GPKDGGYFIYQSSIVRVTPGETLQPSYIKAAMENNGLEQVREGLNILGRTGWRINRDVFE 957
Query: 510 VLESIWVSGGNIAGLVDRNDVLIPEKPL--SEDMTEVQKWKWSVRKAKKINQERHSQRCD 567
V+ W SG IA L N L P E + +KW ++R+ + HS RC
Sbjct: 958 VMLEAWNSGEAIASLAPLNPDLPPPPKPAPEEGLAAEKKWDNAMREIENRRSGMHSNRCF 1017
Query: 568 TELKLSVARRMKDEEGFYYPHNLDFRGRAYPMHPHLNHLSSDVCRGVLEFAEGRPLGKSG 627
+L VAR +++ FY PHN+DFRGRAYP+ P+LN + +D RG+L F+E +PLG G
Sbjct: 1018 QNFQLEVARAYRNDT-FYLPHNMDFRGRAYPLPPYLNQMGADNARGLLLFSEAKPLGARG 1076
Query: 628 LRWLKIHLANLFSGGVEKLSHDGRLAFVENHLYEIFDSAENPINGSRWWLTAEDPFQCLA 687
LRWLKI +ANL G +K S R + +HL E+ DSA ++G RWWL AEDP+QCLA
Sbjct: 1077 LRWLKIQIANL--AGFDKASLSEREQWTMDHLDEVLDSANKGLHGRRWWLDAEDPWQCLA 1134
Query: 688 ACINLSEALKSSSPHSVISHLPIHQDGSCNGLQHYAALGRNTLEAAAVNLVAGEKPADVY 747
AC L AL+ P S LPIHQDGSCNGLQHYAALG + + A VNL ++P+DVY
Sbjct: 1135 ACCELRNALQHPDPTQYPSRLPIHQDGSCNGLQHYAALGGDKVGAQQVNLEPSDRPSDVY 1194
Query: 748 SEIAVRVHEIMKRDSNKDPSKHPQALLAKILIDQVDRKLVKQTVMTSVYGVTFVGAREQI 807
S +A V E + R++ + +AK+L ++ RK+VKQTVMT+VYGVTF+GA +Q+
Sbjct: 1195 SGVAEFVKEAVAREAKEGIP------IAKLLDGKITRKIVKQTVMTNVYGVTFMGAMKQV 1248
Query: 808 KRRLEEKGHITDDRQLFAAACYAAKVTLTALGEIFEAARSIMGWLGDCAK---------- 857
+++L + + Y A+ ALG +F A I WLGDCA
Sbjct: 1249 RKQLVDHYPELSADDTKGGSLYIARKIFEALGTMFNGAHEIQYWLGDCASRITQSLSPEQ 1308
Query: 858 -----------------VIASENQP-------VRWTTPLGLPVVQPYCKNERHLIRTSLQ 893
+I N P V WTTPLGLPVVQPY + +RT+LQ
Sbjct: 1309 IEEIAKEALSPTQSDGGLIRKANDPAQKFRSTVIWTTPLGLPVVQPYRVRKSRRVRTTLQ 1368
Query: 894 VLALQREG--NLVKIRKQRTAFPPNFVHSLDGSHMMMTAVACRDAGLHFAGL 943
L++ G ++V RKQ AFPPNF+HSLD +HMMM+A+AC AGL F+ +
Sbjct: 1369 DLSIVDMGSDDVVSKRKQLQAFPPNFIHSLDATHMMMSAIACDRAGLSFSAV 1420
>gi|238488645|ref|XP_002375560.1| mitochondrial DNA-directed RNA polymerase, putative [Aspergillus
flavus NRRL3357]
gi|83770340|dbj|BAE60473.1| unnamed protein product [Aspergillus oryzae RIB40]
gi|220697948|gb|EED54288.1| mitochondrial DNA-directed RNA polymerase, putative [Aspergillus
flavus NRRL3357]
gi|391866652|gb|EIT75920.1| DNA-directed RNA polymerase RPO41 [Aspergillus oryzae 3.042]
Length = 1375
Score = 433 bits (1114), Expect = e-118, Method: Compositional matrix adjust.
Identities = 284/832 (34%), Positives = 430/832 (51%), Gaps = 85/832 (10%)
Query: 169 EMKKRKFNLLRRRQVKQET--EAWERMVDEYKELEAKMIEKRLAPNLPHIKGLFLGWFGP 226
E K +N LR+RQ++ ++ + ER E+ +++ ++ + + + W
Sbjct: 344 EEKLELYNQLRQRQLETDSIRTSLERWRQEFTQMQKSGLD--MTGGGKKLGTIMNQWHMG 401
Query: 227 LSEAIEREQKMQ--------RT--KKQKAAYAPHIELLPADKVAVIVMHKMMGLVMAGHE 276
L I+ E K+ RT +K++ Y ++ L +++A + + ++ G
Sbjct: 402 LVSRIQEELKLVDEAEANPIRTFEQKERYDYGVYLRSLDPERLAALTILAVISTFSRGGM 461
Query: 277 DRCVQVVQAAVHIGMAIEQEIRIHSFLEKTKNYKRKKIIADTEEVLSKEKELLRKRVNSL 336
++ ++V A IG ++ E+ L+K + +++ A E + ++K+ R +
Sbjct: 462 EKGIKVSAIATGIGKDLQDELIAEMTLKKQQTGDARRLKALREILAGRKKKDGRASWQKI 521
Query: 337 IKSKRVMEAQKLLKNEETKPWGRDTQAKLGSRLVELLIETAYV----QHPVNPADYSPPD 392
+ K + W +AK+G+ L+ L + V +HP D
Sbjct: 522 V--------HDFEKEDPAAIWPPRVKAKVGAVLMSFLFDVGKVPVLTEHPRT--DKKTIV 571
Query: 393 VRPAFRHRFKTILKHPGQKTTKRYGVVECDPLVLEGLDRS-AKHMLIPYVPMLVPPKKWK 451
++PAF+H ++ K+ G V P V++ + R +L +PM+ PK W
Sbjct: 572 MQPAFQHSYQI-------NWGKKSGYVHLHPEVVQIVAREPTADVLGRQLPMICKPKPWN 624
Query: 452 GYNKGGYLFLPSYVMR-THGSRKQQEALKS-VTGNCMKKVFEALDTLGSTKWRVNKQVLS 509
G GGY S ++R T G Q +K+ + N +++V E L+ LG T WR+N+ V
Sbjct: 625 GPKDGGYFIYQSSIVRVTPGETLQPSYIKAAMENNGLEQVREGLNILGRTGWRINRDVFE 684
Query: 510 VLESIWVSGGNIAGLVDRNDVLIPEKPL--SEDMTEVQKWKWSVRKAKKINQERHSQRCD 567
V+ W SG IA L N L P E + +KW ++R+ + HS RC
Sbjct: 685 VMLEAWNSGEAIASLAPLNPDLPPPPKPAPEEGLAAEKKWDNAMREIENRRSGMHSNRCF 744
Query: 568 TELKLSVARRMKDEEGFYYPHNLDFRGRAYPMHPHLNHLSSDVCRGVLEFAEGRPLGKSG 627
+L VAR +++ FY PHN+DFRGRAYP+ P+LN + +D RG+L F+E +PLG G
Sbjct: 745 QNFQLEVARAYRNDT-FYLPHNMDFRGRAYPLPPYLNQMGADNARGLLLFSEAKPLGARG 803
Query: 628 LRWLKIHLANLFSGGVEKLSHDGRLAFVENHLYEIFDSAENPINGSRWWLTAEDPFQCLA 687
LRWLKI +ANL G +K S R + +HL E+ DSA ++G RWWL AEDP+QCLA
Sbjct: 804 LRWLKIQIANL--AGFDKASLSEREQWTMDHLDEVLDSANKGLHGRRWWLDAEDPWQCLA 861
Query: 688 ACINLSEALKSSSPHSVISHLPIHQDGSCNGLQHYAALGRNTLEAAAVNLVAGEKPADVY 747
AC L AL+ P S LPIHQDGSCNGLQHYAALG + + A VNL ++P+DVY
Sbjct: 862 ACCELRNALQHPDPTQYPSRLPIHQDGSCNGLQHYAALGGDKVGAQQVNLEPSDRPSDVY 921
Query: 748 SEIAVRVHEIMKRDSNKDPSKHPQALLAKILIDQVDRKLVKQTVMTSVYGVTFVGAREQI 807
S +A V E + R++ + +AK+L ++ RK+VKQTVMT+VYGVTF+GA +Q+
Sbjct: 922 SGVAEFVKEAVAREAKEGIP------IAKLLDGKITRKIVKQTVMTNVYGVTFMGAMKQV 975
Query: 808 KRRLEEKGHITDDRQLFAAACYAAKVTLTALGEIFEAARSIMGWLGDCAK---------- 857
+++L + + Y A+ ALG +F A I WLGDCA
Sbjct: 976 RKQLVDHYPELSADDTKGGSLYIARKIFEALGTMFNGAHEIQYWLGDCASRITQSLSPEQ 1035
Query: 858 -----------------VIASENQP-------VRWTTPLGLPVVQPYCKNERHLIRTSLQ 893
+I N P V WTTPLGLPVVQPY + +RT+LQ
Sbjct: 1036 IEEIAKEALSPTQSDGGLIRKANDPAQKFRSTVIWTTPLGLPVVQPYRVRKSRRVRTTLQ 1095
Query: 894 VLALQREG--NLVKIRKQRTAFPPNFVHSLDGSHMMMTAVACRDAGLHFAGL 943
L++ G ++V RKQ AFPPNF+HSLD +HMMM+A+AC AGL F+ +
Sbjct: 1096 DLSIVDMGSDDVVSKRKQLQAFPPNFIHSLDATHMMMSAIACDRAGLSFSAV 1147
>gi|225680077|gb|EEH18361.1| DNA-directed RNA polymerase [Paracoccidioides brasiliensis Pb03]
Length = 1319
Score = 433 bits (1114), Expect = e-118, Method: Compositional matrix adjust.
Identities = 277/837 (33%), Positives = 423/837 (50%), Gaps = 95/837 (11%)
Query: 167 YREMKKRKFNLLRRRQVKQETEAWERMVDEYKELEAKMIEKRLAPNLPHIKGLFLGWFGP 226
Y EM++R+ L V+ W + + +++ I P+ P + L W
Sbjct: 249 YAEMRQRR---LESDCVESAIARWHKESENLRKVGVNPI-----PSKP-MGALLYDWHTQ 299
Query: 227 LSEAIE----------REQKMQRTKKQKAAYAPHIELLPADKVAVIVMHKMMGLVMAGHE 276
L I+ ++ +M ++ +P++ + DK+A + + +
Sbjct: 300 LMSKIKEELERIEESEQKTRMLPEDAKRVEISPYLRAIKMDKLAALTILSTFNALNKNGV 359
Query: 277 DRCVQVVQAAVHIGMAIEQEIRIHSFLE----KTKNYKRKKIIADTEEVLSKEKELLRKR 332
D+ V++ +++G +I E F E + N + K I +++ ++ KR
Sbjct: 360 DKGVKLTILVMYLGKSIHDEFMAMQFRELENKSSSNGRTSKFIDKLVHKGTRKAQVQWKR 419
Query: 333 VNSLIK-SKRVMEAQKLLKNEETKPWGRDTQAKLGSRLVELLIETAYVQHPVNPADYSPP 391
+ + + S+R +E W QAK+G+ L +L+ +A V PV D
Sbjct: 420 LIAKFEHSQRPVE------------WSPIVQAKIGACLALMLLSSATV--PVFSKDPKTN 465
Query: 392 DVRPAFRHRFKTILKHPGQKTTKRYGVVECDPLVLEGLDRSA-KHMLIPYVPMLVPPKKW 450
+ + + F+ + + + R G V ++E L R +L ++PM+ PP+ W
Sbjct: 466 KTKRSDQMAFRRVYQ---LERGFRVGYVHAHDRIVEKLRREPLGDLLAKHLPMVCPPRPW 522
Query: 451 KGYNKGGYLFLPSYVMRT-HGSRKQQEALKSVTGNC-MKKVFEALDTLGSTKWRVNKQVL 508
GG+L PS V+R G Q +++ + VF L LG T W++N+ VL
Sbjct: 523 TSARDGGFLKTPSPVLRVKEGDVSQLSYVETAAARGDLDTVFAGLTVLGKTGWKINRGVL 582
Query: 509 SVLESIWVSGGNIAGLV-DRNDVLIPEKPLSEDMTEVQKWKWSVRKAKKINQERHSQRCD 567
V+ W SG IA L + D+ PE+P +ED + + + A HSQRC
Sbjct: 583 EVMFEAWNSGEEIANLAPETPDIPEPERPNTEDRDALTDYYRAKMHAANTRSSYHSQRCF 642
Query: 568 TELKLSVARRMKDEEGFYYPHNLDFRGRAYPMHPHLNHLSSDVCRGVLEFAEGRPLGKSG 627
+L +AR ++E FY PHNLDFRGRAYPM P+ N + +D CRG+L F +GR LG SG
Sbjct: 643 QNFQLEIARAYRNET-FYLPHNLDFRGRAYPMPPYFNQMGADHCRGLLLFNKGRELGTSG 701
Query: 628 LRWLKIHLANLFSGGVEKLSHDGRLAFVENHLYEIFDSAENPINGSRWWLTAEDPFQCLA 687
LRWLKIHLAN+F G +K S R F +HL +I DSA N + G +WWL A DPFQCLA
Sbjct: 702 LRWLKIHLANVF--GFDKASFQEREQFSMDHLEDIRDSAINGLKGKKWWLDAADPFQCLA 759
Query: 688 ACINLSEALKSSSPHSVISHLPIHQDGSCNGLQHYAALGRNTLEAAAVNLVAGEKPADVY 747
ACI L+ A++ P +SHLP+HQDGSCNGLQHYAALG + + A VNL ++P+D+Y
Sbjct: 760 ACIELTNAMQLEDPTKFVSHLPVHQDGSCNGLQHYAALGGDIIGAQQVNLEPSDRPSDIY 819
Query: 748 SEIAVRVHEIMKRDSNKDPSKHPQALLAKILIDQVDRKLVKQTVMTSVYGVTFVGAREQI 807
+ +A V +++D+ AK+L +++ RK+VKQTVMT+VYGVTF+GA Q+
Sbjct: 820 TGVAEHVKASIQKDAADGNET------AKLLENKITRKIVKQTVMTNVYGVTFLGAIRQV 873
Query: 808 KRR-LEEKGHITDDRQLFAAACYAAKVTLTALGEIFEAARSIMGWLGDCAKVIASENQP- 865
+++ L+ + + A Y A+ ALG +F A +I WLGDCA I+ P
Sbjct: 874 RKQLLDHYPELFHSGVVGQCATYIARKIFAALGSMFTGAHNIQFWLGDCANRISQSLSPE 933
Query: 866 -------------------------------------VRWTTPLGLPVVQPYCKNERHLI 888
V WTTPL LPV QPY + +
Sbjct: 934 QIEILSDEKGLEAVGNSRSSKKLAKIIKSPKAHFKSTVVWTTPLKLPVAQPYREAACVRV 993
Query: 889 RTSLQVLALQ--REGNLVKIRKQRTAFPPNFVHSLDGSHMMMTAVACRDAGLHFAGL 943
+ LQ L+++ + +++ RKQ AFPPNFVHSLD +HM ++AV C + GL F+ +
Sbjct: 994 FSDLQQLSIRNPQASDVINKRKQLQAFPPNFVHSLDATHMFLSAVKCDELGLSFSAV 1050
>gi|328851510|gb|EGG00664.1| hypothetical protein MELLADRAFT_50335 [Melampsora larici-populina
98AG31]
Length = 854
Score = 433 bits (1114), Expect = e-118, Method: Compositional matrix adjust.
Identities = 253/637 (39%), Positives = 357/637 (56%), Gaps = 71/637 (11%)
Query: 353 ETKPWGRDTQAKLGSRLVELLIETAYV-QHPVNPADYSPPDVRPAFRHRFKTILKHPGQK 411
E W + +AK+G+ L++ L++TA + + V P + +PAF ++T G
Sbjct: 123 EHTDWTINQRAKVGAMLMKGLLQTAKITRSQVMPDGSIYKEEQPAF---YQTTQYFDG-- 177
Query: 412 TTKRYGVVECDPLVLEGLDRSAKHMLI--PYVPMLVPPKKWKGYNKGGYLFLPSYVMRTH 469
KR GV + + V E LDR ++ + Y+PM+ PP W G YL + MRT
Sbjct: 178 --KRVGVTKLNEAVAERLDRDPANVTLHPRYLPMISPPLPWTSPKNGAYLVHAAPFMRTK 235
Query: 470 GSRKQQ-EALKSVTGNCMKKVFEALDTLGSTKWRVNKQVLSVLESIWVSGGNIAGL---- 524
S +Q +++ N + +F+ALD LG T W +N+ V V+ +W SG +AG+
Sbjct: 236 DSPEQHLHVMEAHRLNGLDDIFQALDKLGQTAWAINRPVFDVMAVVWNSGKELAGIPVRD 295
Query: 525 ----VDRNDV---LIPEKPLSEDMTEVQKW----KWSVRKAKKINQERHSQRCDTELKLS 573
+D +D+ L+ PL + E + K R + + QRC +L
Sbjct: 296 PHLNLDVSDLQSELLKNDPLEDGSQESPRMEGERKEIYRSLLATRRSAYGQRCSVNYQLE 355
Query: 574 VARRMKDEEGFYYPHNLDFRGRAYPMHPHLNHLSSDVCRGVLEFAEGRPLGKSGLRWLKI 633
+AR +E FY+PHN+DFRGRAYP+ +LNH+ D+ RG+L FAE + LG+ GL WLK+
Sbjct: 356 IARAYLNET-FYFPHNVDFRGRAYPLPANLNHIGDDISRGLLTFAERKELGERGLFWLKV 414
Query: 634 HLANLFSGGVEKLSHDGRLAFVENHLYEIFDSAENPINGSRWWLTAEDPFQCLAACINLS 693
HLAN G +K S D RLAF E HL +I DSA++P++G WWL +EDP+Q LAACI L+
Sbjct: 415 HLAN--KAGYDKASLDERLAFTEGHLKDINDSADHPLDGPGWWLKSEDPWQTLAACIELT 472
Query: 694 EALKSSSPHSVISHLPIHQDGSCNGLQHYAALGRNTLEAAAVNLVAGEKPADVYSEIAVR 753
EAL+S P S LP+HQDGSCNGLQHYAALG + VNL+ G +P DVYS++A
Sbjct: 473 EALRSDDPTKYKSRLPVHQDGSCNGLQHYAALGGDVEGGREVNLIPGIRPGDVYSKVATE 532
Query: 754 VHEIMKRDSNKDPSKHPQALLAKILIDQVDRKLVKQTVMTSVYGVTFVGAREQIKRRLEE 813
V++++ +D+ +AK L + RK+VKQTVMT+VYGVTFVGAREQI+R+L++
Sbjct: 533 VNKLVNQDAENGHD------IAKALKGHIKRKVVKQTVMTTVYGVTFVGAREQIRRQLKD 586
Query: 814 KGHITDDRQLFAAACYAAKVTLTALGEIFEAARSIMGWLGDCAKVIASENQPVR------ 867
G I L+ +A Y A + L ++GE+F A +I WL A+++A P R
Sbjct: 587 LGVIPVP-NLYISAAYVATLVLRSIGEVFRGAVAIQRWLTYVARLVAKSIPPERASLLMT 645
Query: 868 ---------------------------WTTPLGLPVVQPYCKNERHLIRTSLQVLALQR- 899
WTTPLGL V QPY R I T LQ + +
Sbjct: 646 KVDVPGQSISANAQKAQDETELMTSMTWTTPLGLVVCQPYRAQNRTQISTVLQTVYIADP 705
Query: 900 -EGNLVKIRKQRTAFPPNFVHSLDGSHMMMTAVACRD 935
E R Q +AFPPNF+HSLD +HMM+TA+AC+D
Sbjct: 706 FEPAQADSRGQASAFPPNFIHSLDATHMMLTALACKD 742
>gi|336471080|gb|EGO59241.1| mitochondrial DNA-directed RNA polymerase [Neurospora tetrasperma
FGSC 2508]
gi|350292162|gb|EGZ73357.1| mitochondrial DNA-directed RNA polymerase [Neurospora tetrasperma
FGSC 2509]
Length = 1416
Score = 433 bits (1113), Expect = e-118, Method: Compositional matrix adjust.
Identities = 267/784 (34%), Positives = 409/784 (52%), Gaps = 96/784 (12%)
Query: 231 IEREQKMQRTKKQK-----AAYAPHIELLPADKVAVIVMHKMMGLVMAGHEDRCVQVVQA 285
+E E+ +KK K Y P I +++A + + + + G + +
Sbjct: 416 VEVEKSEMVSKKNKDDLDRCIYGPFIRQSNPERLAAVTIISTLSSLAMGGAHKGSTIASL 475
Query: 286 AVHIGMAIEQEIRIHSFLEKTKNYKRKKIIADTEEVLSKEKELLR-KRVNSLIKSKRVME 344
HI E++IR+ +K + K + + + +LR K + S + +
Sbjct: 476 ITHIAKFAEEDIRV----QKAEALISKHNLRKAKSKQHNPRSVLRFKNSTASAGSSDMAD 531
Query: 345 AQKLLKNEETKPWGRDTQAKLGSRLVELLIETAYV----QHPVNPADYSPPDVRPAFRHR 400
+ + + + W + K+G+ L+ L++TA + + PV + +PAF H
Sbjct: 532 SNNVAVEMDDEAWTTTIRTKVGAALLSALLDTAKITLVREDPVTKTLIT--QNQPAFSHV 589
Query: 401 FKTILKHPGQKTTKRYGVVECDPLVLEGLDRS-AKHMLIPYVPMLVPPKKWKGYNKGGYL 459
+ + K+ G + + V+E L R L ++PM+ PP W + KG YL
Sbjct: 590 MQL-------RKGKKIGTIIPNKAVVELLVREPVPDFLARHLPMVTPPDPWVSFEKGAYL 642
Query: 460 FLPSYVMRTHGSRKQQEALK--SVTGNCMKKVFEALDTLGSTKWRVNKQVLSVLESIWVS 517
+ V+R ++Q ++ M +VF+ LD LG T W++N V V+ +W S
Sbjct: 643 ETKTPVLRLKNGEREQRLYTEAAIARGDMDQVFKGLDVLGKTGWKINSPVFKVMLDVWNS 702
Query: 518 GGNIAGLVDRNDV--LIPEKPLSEDMTEVQKWKWSVRKAKKINQER---HSQRCDTELKL 572
G +A + + + L PE +ED T + W +++ K I ER HSQRC +L
Sbjct: 703 GKKVANIPPLDPIFDLPPEPASTEDPTVKRAW---LKEIKVIENERSGLHSQRCFMNFQL 759
Query: 573 SVARRMKDEEGFYYPHNLDFRGRAYPMHPHLNHLSSDVCRGVLEFAEGRPLGKSGLRWLK 632
+AR +D+ FY+PHN+DFRGRAYP+ P+LNH+ +D RG++ FA+G+PLG+SGLRWLK
Sbjct: 760 EIARAYRDQT-FYFPHNVDFRGRAYPIPPYLNHMGADHVRGLMLFAKGKPLGESGLRWLK 818
Query: 633 IHLANLFSGGVEKLSHDGRLAFVENHLYEIFDSAENPINGSRWWLTAEDPFQCLAACINL 692
+HLAN++ G +K S R F + ++ I DS NP+NG++WWL AEDP+QCLA C L
Sbjct: 819 VHLANVY--GFDKASLQERQDFADENIENIRDSVINPLNGNQWWLQAEDPWQCLATCFEL 876
Query: 693 SEALKSSSPHSVISHLPIHQDGSCNGLQHYAALGRNTLEAAAVNLVAGEKPADVYSEIAV 752
+ AL+ P +SHLPIHQDG+CNGLQHYAALG +T A VNLV G++PADVYS +A
Sbjct: 877 AAALELEDPTQYVSHLPIHQDGTCNGLQHYAALGGDTWGAQQVNLVPGDRPADVYSAVAK 936
Query: 753 RVHEIMKRDSNKDPSKHPQALLAKILIDQVDRKLVKQTVMTSVYGVTFVGAREQIKRRLE 812
V + ++ D KD AK + ++ RK+VKQTVMT+VYGVT+VGA++Q+ +++E
Sbjct: 937 LVIKGIEDDLAKDNE------FAKAMHGKITRKVVKQTVMTNVYGVTYVGAKKQVLKQIE 990
Query: 813 EK-GHITDDRQLFAA--ACYAAKVTLTALGEIFEAARSIMGWLGDCAKVIA--------- 860
+IT + + AA A Y + A+ +F+ A I WLG+ +
Sbjct: 991 AAYPNITAESGIEAALLASYVTQHIFRAMSTMFKGAHDIQNWLGEIGGRVCRALTPEQLD 1050
Query: 861 ----SENQP-----------------------------------VRWTTPLGLPVVQPYC 881
SE P + WTTPL +PVVQPY
Sbjct: 1051 EFERSERSPHGDGTASGENITLAGNPRKSSAHKNDEILNNFQSTIIWTTPLRMPVVQPYR 1110
Query: 882 KNERHLIRTSLQ--VLALQREGNLVKIRKQRTAFPPNFVHSLDGSHMMMTAVACRDAGLH 939
K+ + T +Q V+ + + V RKQ AFPPNF+HSLD SHM+++A+ C + GL
Sbjct: 1111 KHGTKTVSTCMQDLVMTIPERSDPVNRRKQLQAFPPNFIHSLDASHMILSALHCDELGLT 1170
Query: 940 FAGL 943
FA +
Sbjct: 1171 FAAV 1174
>gi|226291871|gb|EEH47299.1| DNA-directed RNA polymerase [Paracoccidioides brasiliensis Pb18]
Length = 1408
Score = 433 bits (1113), Expect = e-118, Method: Compositional matrix adjust.
Identities = 277/837 (33%), Positives = 421/837 (50%), Gaps = 95/837 (11%)
Query: 167 YREMKKRKFNLLRRRQVKQETEAWERMVDEYKELEAKMIEKRLAPNLPHIKGLFLGWFGP 226
Y EM++R+ L V+ W + + +++ I P+ P + L W
Sbjct: 362 YAEMRQRR---LESDCVESAIARWHKESENLRKVGVNPI-----PSKP-MGALLYDWHTQ 412
Query: 227 LSEAIE----------REQKMQRTKKQKAAYAPHIELLPADKVAVIVMHKMMGLVMAGHE 276
L I+ ++ +M ++ +P++ + DK+A + + +
Sbjct: 413 LMSKIKEELERIEESEQKTRMLPEDAKRVEISPYLRAIKMDKLAALTILSTFNALNKNGV 472
Query: 277 DRCVQVVQAAVHIGMAIEQEIRIHSFLE----KTKNYKRKKIIADTEEVLSKEKELLRKR 332
D+ V++ +++G +I E F E + N + K I +++ ++ KR
Sbjct: 473 DKGVKLTILVMYLGKSIHDEFMAMQFRELENKSSSNGRTSKFIDKLAHKGTRKAQVQWKR 532
Query: 333 -VNSLIKSKRVMEAQKLLKNEETKPWGRDTQAKLGSRLVELLIETAYVQHPVNPADYSPP 391
+ S+R +E W QAK+G+ L +L+ +A V PV D
Sbjct: 533 LIAKFEHSQRPVE------------WSPIVQAKIGACLALMLLSSATV--PVFSKDPKTN 578
Query: 392 DVRPAFRHRFKTILKHPGQKTTKRYGVVECDPLVLEGLDRSA-KHMLIPYVPMLVPPKKW 450
+ + + F+ + + + R G V ++E L R +L ++PM+ PP+ W
Sbjct: 579 KTKRSDQMAFRRVYQ---LERGFRVGYVHAHDRIVEKLRREPLGDLLAKHLPMVCPPRPW 635
Query: 451 KGYNKGGYLFLPSYVMRT-HGSRKQQEALKSVTGNC-MKKVFEALDTLGSTKWRVNKQVL 508
GG+L PS V+R G Q +++ + VF L LG T W++N+ VL
Sbjct: 636 TSARDGGFLKTPSPVLRVKEGDVSQLSYVETAAARGDLDTVFAGLTVLGKTGWKINRGVL 695
Query: 509 SVLESIWVSGGNIAGLV-DRNDVLIPEKPLSEDMTEVQKWKWSVRKAKKINQERHSQRCD 567
V+ W SG IA L + D+ PE+P +ED + + + A HSQRC
Sbjct: 696 EVMLEAWNSGEEIANLAPETPDIPEPERPNTEDRDALTDYYRAKVHAANTRSSYHSQRCF 755
Query: 568 TELKLSVARRMKDEEGFYYPHNLDFRGRAYPMHPHLNHLSSDVCRGVLEFAEGRPLGKSG 627
+L +AR ++E FY PHNLDFRGRAYPM P+ N + +D CRG+L F +GR LG SG
Sbjct: 756 QNFQLEIARAYRNET-FYLPHNLDFRGRAYPMPPYFNQMGADHCRGLLLFNKGRELGTSG 814
Query: 628 LRWLKIHLANLFSGGVEKLSHDGRLAFVENHLYEIFDSAENPINGSRWWLTAEDPFQCLA 687
LRWLKIHLAN+F G +K S R F +HL +I DSA N + G +WWL A DPFQCLA
Sbjct: 815 LRWLKIHLANVF--GFDKASFQEREQFSMDHLEDIRDSAINGLKGKKWWLDAADPFQCLA 872
Query: 688 ACINLSEALKSSSPHSVISHLPIHQDGSCNGLQHYAALGRNTLEAAAVNLVAGEKPADVY 747
ACI L+ A++ P +SHLP+HQDGSCNGLQHYAALG + + A VNL ++P+D+Y
Sbjct: 873 ACIELTNAMQLEDPTKFVSHLPVHQDGSCNGLQHYAALGGDIIGAQQVNLEPSDRPSDIY 932
Query: 748 SEIAVRVHEIMKRDSNKDPSKHPQALLAKILIDQVDRKLVKQTVMTSVYGVTFVGAREQI 807
+ +A V +++D+ AK+L +++ RK+VKQTVMT+VYGVTF+GA Q+
Sbjct: 933 TGVAEHVKASIQKDAADGNET------AKLLENKITRKIVKQTVMTNVYGVTFLGAIRQV 986
Query: 808 KRR-LEEKGHITDDRQLFAAACYAAKVTLTALGEIFEAARSIMGWLGDCAKVIASENQP- 865
+++ L+ + + A Y A+ ALG +F A +I WLGDCA I+ P
Sbjct: 987 RKQLLDHYPELFHSGVVGQYATYIARKIFAALGSMFTGAHNIQFWLGDCANRISQSLSPE 1046
Query: 866 -------------------------------------VRWTTPLGLPVVQPYCKNERHLI 888
V WTTPL LPV QPY + +
Sbjct: 1047 QIEILSDEKGLEAVGNSRSSKKLAKIIKSPKAHFKSTVVWTTPLKLPVAQPYREAACVRV 1106
Query: 889 RTSLQVLALQ--REGNLVKIRKQRTAFPPNFVHSLDGSHMMMTAVACRDAGLHFAGL 943
+ LQ L+++ + +++ RKQ AFPPNFVHSLD +HM ++AV C + GL F+ +
Sbjct: 1107 FSDLQQLSIRNPQASDVINKRKQLQAFPPNFVHSLDATHMFLSAVKCDELGLSFSAV 1163
>gi|212530466|ref|XP_002145390.1| mitochondrial DNA-directed RNA polymerase, putative [Talaromyces
marneffei ATCC 18224]
gi|210074788|gb|EEA28875.1| mitochondrial DNA-directed RNA polymerase, putative [Talaromyces
marneffei ATCC 18224]
Length = 1378
Score = 432 bits (1112), Expect = e-118, Method: Compositional matrix adjust.
Identities = 268/746 (35%), Positives = 402/746 (53%), Gaps = 81/746 (10%)
Query: 247 YAPHIELLPADKVAVI-VMHKMMGLVMAGHEDRCVQVVQAAVHIGMAIEQEIRIHSFLEK 305
YA + LLP D +A I VMH + AG E + ++V +G ++ E S + K
Sbjct: 419 YADFLRLLPPDTLAAITVMHIIQLFARAGVE-KGLKVPTIMTSLGQEVQNEFIAQSMIAK 477
Query: 306 T-KNYKRKKIIADTEEVLSKEKELLRKRVNSLIKSKRVMEAQKLLKNEETKP--WGRDTQ 362
+ ++ + +K I E RK+ IK K+++ K + W D
Sbjct: 478 SERDSRHQKFIKQVVEN--------RKKKAGRIKFKKLLTEMKCDSRQIDSELNWPIDVH 529
Query: 363 AKLGSRLVELLIETAYVQHPVNPADYSPPDVR-------PAFRHRFKTILKHPGQKTTKR 415
AK+G L+ LL + A + PV D P+ + PAF+H ++ ++
Sbjct: 530 AKVGGALLSLLFDCA--KTPVVQED---PETKKRITIMEPAFQHSYEI-------NRGRK 577
Query: 416 YGVVECDPLVLEGLDRSAKHML-IPYVPMLVPPKKWKGYNKGGYLFLPSYVMRTH-GSRK 473
+G++ P V L R A + + ++PML P+ W G++KGG+L S ++RT G
Sbjct: 578 FGLLHAHPEVTRRLIREAPNAVHARHMPMLSEPQPWTGFDKGGFLAQRSSIIRTTPGDTL 637
Query: 474 QQEALK-SVTGNCMKKVFEALDTLGSTKWRVNKQVLSVLESIWVSGGNIAGLVDRN-DVL 531
QQ +K ++ + + +V LD LG T W +N V V+ W +G + + +
Sbjct: 638 QQSYMKKALEKDGLPEVRAGLDILGKTAWTINNDVFDVMLEAWNTGEAFPKIPPLDPKIP 697
Query: 532 IPEKPLSEDMTEVQKWKWSVRKAKKINQERHSQRCDTELKLSVARRMKDEEGFYYPHNLD 591
+PEKP +D+ ++ + +R+A+ + HSQRC ++ +AR K++ FY PHN+D
Sbjct: 698 MPEKPADDDIEAMKVYNNKLREAENLRSGLHSQRCFINFQMEIARAYKNQT-FYLPHNMD 756
Query: 592 FRGRAYPMHPHLNHLSSDVCRGVLEFAEGRPLGKSGLRWLKIHLANLFSGGVEKLSHDGR 651
FRGRAYP+ +LN +S+D R +L F +G+ LG++GLRWLKIHL+N++ G +K S R
Sbjct: 757 FRGRAYPLPAYLNQMSADNARSLLLFKKGKALGEAGLRWLKIHLSNVY--GFDKASLQER 814
Query: 652 LAFVENHLYEIFDSAENPINGSRWWLTAEDPFQCLAACINLSEALKSSSPHSVISHLPIH 711
F HL ++ DSA ++G +W++ AEDP+QCLAAC L AL+ SP +S LP+H
Sbjct: 815 EEFTMKHLDDVLDSANKGLHGRKWFMEAEDPWQCLAACCELRNALQLESPAEYMSRLPVH 874
Query: 712 QDGSCNGLQHYAALGRNTLEAAAVNLVAGEKPADVYSEIAVRVHEIMKRDSNKDPSKHPQ 771
QDGSCNGLQHYAALG + A VNL G++P D+Y+ ++ V E + RD+ + H
Sbjct: 875 QDGSCNGLQHYAALGGDMEGAQHVNLEPGDRPKDIYTGVSDYVTEKVARDA---AAGHE- 930
Query: 772 ALLAKILIDQVDRKLVKQTVMTSVYGVTFVGAREQIKRRLEEKGHITDDRQLFAAACYAA 831
+AK+L ++ RK+VKQTVMT+VYGVTFVGA Q++R++ H ++ + Y A
Sbjct: 931 --IAKLLEGKIKRKIVKQTVMTNVYGVTFVGAIRQVRRQI--AAHYPGLEEVPGISKYIA 986
Query: 832 KVTLTALGEIFEAARSIMGWLGDCAKVIA-------------------------SENQPV 866
AL IF A SI WLGDCA I+ +E P+
Sbjct: 987 SAIFEALSTIFSGAHSIQYWLGDCATRISQSISPDQLDLLAKHVLQANPSVKDDAETDPL 1046
Query: 867 R-------WTTPLGLPVVQPYCKNERHLIRTSLQVLAL--QREGNLVKIRKQRTAFPPNF 917
+ WTTPLGLPVVQPY + + T+LQ L + V RKQ AFPPNF
Sbjct: 1047 KMFRSTIIWTTPLGLPVVQPYRAVKCQRVYTTLQTLNIIQNSTSGSVSKRKQLQAFPPNF 1106
Query: 918 VHSLDGSHMMMTAVACRDAGLHFAGL 943
+HSLD +HMM++A+ C GL F+ +
Sbjct: 1107 IHSLDATHMMLSAIECYRQGLVFSAV 1132
>gi|300120043|emb|CBK19597.2| unnamed protein product [Blastocystis hominis]
Length = 595
Score = 432 bits (1110), Expect = e-118, Method: Compositional matrix adjust.
Identities = 233/523 (44%), Positives = 323/523 (61%), Gaps = 17/523 (3%)
Query: 426 LEGLDRSAKHMLIPYVPMLVPPKKWKGYNKGGYLFLPSYVMRTHGSRKQQEALKSVTGNC 485
L+ D + I Y PMLVPP+ W + GG++ + MRTHGS+ Q + L
Sbjct: 12 LDQGDSRGEISFIRYKPMLVPPRPWLSVDSGGFISQKTVFMRTHGSKLQTDCLYQAD--- 68
Query: 486 MKKVFEALDTLGSTKWRVNKQVLSVLESIWVSGGNIAGLVDRNDVLIPEKPLSEDMTEVQ 545
+ VF +L+ LG W +NK VL V E++W +GG + R D+ +P+ SE +E +
Sbjct: 69 LTSVFRSLNILGKVGWVINKDVLKVAEAVWENGGGELDIPSRTDLKMPDP--SEFESE-K 125
Query: 546 KWKWSVRKAKKINQERHSQRCDTELKLSVARRMKDEEGFYYPHNLDFRGRAYPMHPHLNH 605
K++ ++ K K+ N + HS RCD KL +AR +++ Y+P NLDFRGR YP+ PHLNH
Sbjct: 126 KYRKAMMKIKQKNYDLHSLRCDLGYKLDIAREFQNDT-IYFPMNLDFRGRVYPIPPHLNH 184
Query: 606 LSSDVCRGVLEFAEGRPLGKSGLRWLKIHLANLFSGGVEKLSHDGRLAFVENHLYEIFDS 665
L +D+CRG+L FA +PLG+ GL WLKI +ANL+ G +K+S D R +V+ HL I +S
Sbjct: 185 LGNDLCRGLLSFARKKPLGERGLFWLKIQVANLY--GNDKISFDDRSKWVDEHLPAIRES 242
Query: 666 AENPINGSRWWLTAEDPFQCLAACINLSEALKSSSPHSVISHLPIHQDGSCNGLQHYAAL 725
NP+ + WW +DP+Q LA C+ A+ S P + +S++P+HQDGSCNGLQHYAAL
Sbjct: 243 VRNPLAPNAWWKEGDDPWQLLATCMEYIRAIDSPHPEAYLSNIPVHQDGSCNGLQHYAAL 302
Query: 726 GRNTLEAAAVNLVAGEKPADVYSEIAVRVHEIMKRD-SNKDPSKHPQALLAKILIDQVDR 784
G + VNLV KP DVYS + V E + D N D S A L + ++V+R
Sbjct: 303 GLDKTGGTQVNLVPSSKPGDVYSAVLRIVKERIHEDLRNPDASIRAMAELLRG-GEEVNR 361
Query: 785 KLVKQTVMTSVYGVTFVGAREQIKRRLEEK----GHITDDRQLFAAACYAAKVTLTALGE 840
K+VKQTVMTSVYGVTFVGAREQI+ +L + DD L+A + Y A +TL ++G
Sbjct: 362 KVVKQTVMTSVYGVTFVGAREQIEGQLNARRDDKKIDFDDDMLYALSMYLAGLTLGSIGV 421
Query: 841 IFEAARSIMGWLGDCAKVIASENQPVRWTTPLGLPVVQPYCKNERHLIRTSLQVLALQRE 900
+ A +IM WL A +IA N PV W TPLGLPVVQPY K I T++Q + ++
Sbjct: 422 TNKGATTIMAWLNKIAAIIAHTNSPVCWVTPLGLPVVQPYRKENVFHIATAMQDVQVKVN 481
Query: 901 GNLVKI--RKQRTAFPPNFVHSLDGSHMMMTAVACRDAGLHFA 941
+++ + RKQ +AFPPNFVHSLD +HMMMT++ C + FA
Sbjct: 482 NDVLPVLTRKQSSAFPPNFVHSLDSTHMMMTSLVCDKYDMDFA 524
>gi|71002430|ref|XP_755896.1| mitochondrial DNA-directed RNA polymerase [Aspergillus fumigatus
Af293]
gi|66853534|gb|EAL93858.1| mitochondrial DNA-directed RNA polymerase, putative [Aspergillus
fumigatus Af293]
Length = 1375
Score = 432 bits (1110), Expect = e-118, Method: Compositional matrix adjust.
Identities = 265/751 (35%), Positives = 405/751 (53%), Gaps = 79/751 (10%)
Query: 241 KKQKAAYAPHIELLPADKVAVIVMHKMMGLVMAGHEDRCVQVVQAAVHIGMAIEQEIRIH 300
+K++ Y ++ L D +A + + +M G ++ ++V IG ++ E+
Sbjct: 424 QKERCEYGVYLRCLDTDTLAALTILAVMSTFSRGGMEKGLKVSAVVSTIGKDLQDELIAE 483
Query: 301 SFLEKTKNYKRKKIIADTEEVLSKEKELLRKRVNSLIKSKRVMEAQKLLKNEETKPWGRD 360
+ L+ +++ A E + ++K+ R + ++L+ QK+ K + T W
Sbjct: 484 AALKNEAGTDSRRLKALKELLAGRKKKGGRAKWHALV--------QKMQKEDATIMWSPR 535
Query: 361 TQAKLGSRLVELLIETAYVQHPVNPADYSPP----DVRPAFRHRFKTILKHPGQKTTKRY 416
AK+G+ L+ LL E + PV D ++PAF+H ++ +R
Sbjct: 536 VTAKIGAVLMSLLFEVG--KAPVTMEDPETKKKTVTMQPAFQHAYQITWG-------RRT 586
Query: 417 GVVECDPLVLEGLDRS-AKHMLIPYVPMLVPPKKWKGYNKGGYLFLPSYVMRTH-GSRKQ 474
G + P +++ + + +L ++PM+ P+ WKG GG+L S ++RT G Q
Sbjct: 587 GYLHLHPAIVQIVAKEPTADLLGRHLPMVCKPRPWKGMKDGGFLLYQSDIVRTTPGESLQ 646
Query: 475 QEALKS-VTGNCMKKVFEALDTLGSTKWRVNKQVLSVLESIWVSGGNIAGLVDRNDVLIP 533
+K+ + N ++ + LD LGST W +N++VL+V+ W SG +A L L
Sbjct: 647 PTYIKTALENNGLEDIRRGLDNLGSTGWTINREVLNVMLEAWNSGEAVANLAPLEPDLPL 706
Query: 534 EKPLSEDMT--EVQKWKWSVRKAKKINQERHSQRCDTELKLSVARRMKDEEGFYYPHNLD 591
+ + ++W VR+ + HS RC ++ +AR ++ FY PHN+D
Sbjct: 707 PPKPAPEAGYHAEKEWDTLVREIENRRSGLHSMRCFQNFQMELARAYRNVT-FYLPHNMD 765
Query: 592 FRGRAYPMHPHLNHLSSDVCRGVLEFAEGRPLGKSGLRWLKIHLANLFSGGVEKLSHDGR 651
FRGRAYP+ P+LN + +D RG+L F+E +PLG SGLRWLKI +ANL G +K S R
Sbjct: 766 FRGRAYPLPPYLNQMGADNSRGLLLFSEAKPLGASGLRWLKIQIANL--SGFDKASMSER 823
Query: 652 LAFVENHLYEIFDSAENPINGSRWWLTAEDPFQCLAACINLSEALKSSSPHSVISHLPIH 711
F +HL ++ DSA+ ++G RWWL AEDP+QCLAAC L AL+ P S LPIH
Sbjct: 824 EQFTMDHLDDVLDSADKGLHGRRWWLKAEDPWQCLAACCELRNALRHPDPTQYPSRLPIH 883
Query: 712 QDGSCNGLQHYAALGRNTLEAAAVNLVAGEKPADVYSEIAVRVHEIMKRDSNKDPSK-HP 770
QDGSCNGLQHYAALG +++ A VNL ++P+DVY+ +A E +K++ ++ ++ HP
Sbjct: 884 QDGSCNGLQHYAALGGDSVGAQQVNLEPSDRPSDVYTGVA----EFVKKEVAREAAQGHP 939
Query: 771 QALLAKILIDQVDRKLVKQTVMTSVYGVTFVGAREQIKRRLEEKGHITD----DRQLFAA 826
+AKIL ++ RK+VKQTVMT+VYGVTF+GA Q++++L + H D D++
Sbjct: 940 ---IAKILDGRITRKIVKQTVMTNVYGVTFMGAMRQVRKQLID--HYPDLSYEDKK--NG 992
Query: 827 ACYAAKVTLTALGEIFEAARSIMGWLGDCAKVIASENQP--------------------- 865
+ Y A+ ALG +F A I WLGDCA I + P
Sbjct: 993 SLYIARKIFEALGTMFNGAHEIQHWLGDCASRITTSLSPEQIEQIAKEALTPSSGRSAAK 1052
Query: 866 -----------VRWTTPLGLPVVQPYCKNERHLIRTSLQVLAL--QREGNLVKIRKQRTA 912
V WTTPLGLPVVQPY + I T+LQ L++ ++V RKQ A
Sbjct: 1053 LKDPSEKFRSTVIWTTPLGLPVVQPYRVRKARRITTTLQDLSIVDTNSEDVVSKRKQLQA 1112
Query: 913 FPPNFVHSLDGSHMMMTAVACRDAGLHFAGL 943
FPPNF+HSLD +HM+M+A AC AGL F+ +
Sbjct: 1113 FPPNFIHSLDATHMIMSANACNQAGLTFSAV 1143
>gi|159129951|gb|EDP55065.1| mitochondrial DNA-directed RNA polymerase, putative [Aspergillus
fumigatus A1163]
Length = 1376
Score = 431 bits (1109), Expect = e-118, Method: Compositional matrix adjust.
Identities = 265/752 (35%), Positives = 405/752 (53%), Gaps = 80/752 (10%)
Query: 241 KKQKAAYAPHIELLPADKVAVIVMHKMMGLVMAGHEDRCVQVVQAAVHIGMAIEQEIRIH 300
+K++ Y ++ L D +A + + +M G ++ ++V IG ++ E+
Sbjct: 424 QKERCEYGVYLRCLDTDTLAALTILAVMSTFSRGGMEKGLKVSAVVSTIGKDLQDELIAE 483
Query: 301 SFLEKTKNYKRKKIIADTEEVLSKEKELLRKRVNSLIKSKRVMEAQKLLKNEETKPWGRD 360
+ L+ +++ A E + ++K+ R + ++L+ QK+ K + T W
Sbjct: 484 AALKNEAGTDSRRLKALKELLAGRKKKGGRAKWHALV--------QKMQKEDATIMWSPR 535
Query: 361 TQAKLGSRLVELLIETAYVQHPVNPADYSPP----DVRPAFRHRFKTILKHPGQKTTKRY 416
AK+G+ L+ LL E + PV D ++PAF+H ++ +R
Sbjct: 536 VTAKIGAVLMSLLFEVG--KAPVTMEDPETKKKTVTMQPAFQHAYQITWG-------RRT 586
Query: 417 GVVECDPLVLEGLDRS-AKHMLIPYVPMLVPPKKWKGYNKGGYLFLPSYVMRTH-GSRKQ 474
G + P +++ + + +L ++PM+ P+ WKG GG+L S ++RT G Q
Sbjct: 587 GYLHLHPAIVQIVAKEPTADLLGRHLPMVCKPRPWKGMKDGGFLLYQSDIVRTTPGESLQ 646
Query: 475 QEALKS-VTGNCMKKVFEALDTLGSTKWRVNKQVLSVLESIWVSGGNIAGLVDRNDVLIP 533
+K+ + N ++ + LD LGST W +N++VL+V+ W SG +A L L
Sbjct: 647 PTYIKTALENNGLEDIRRGLDNLGSTGWTINREVLNVMLEAWNSGEAVANLAPLEPDLPL 706
Query: 534 EKPLSEDMT--EVQKWKWSVRKAKKINQERHSQRCDTELKLSVARRMKDEEGFYYPHNLD 591
+ + ++W VR+ + HS RC ++ +AR ++ FY PHN+D
Sbjct: 707 PPKPAPEAGYHAEKEWDTLVREIENRRSGLHSMRCFQNFQMELARAYRNVT-FYLPHNMD 765
Query: 592 FRGRAYPMHPHLNHLSSDVCRGVLEFAEGRPLGKSGLRWLKIHLANLFSGGVEKLSHDGR 651
FRGRAYP+ P+LN + +D RG+L F+E +PLG SGLRWLKI +ANL G +K S R
Sbjct: 766 FRGRAYPLPPYLNQMGADNSRGLLLFSEAKPLGASGLRWLKIQIANL--SGFDKASMSER 823
Query: 652 LAFVENHLYEIFDSAENPINGSRWWLTAEDPFQCLAACINLSEALKSSSPHSVISHLPIH 711
F +HL ++ DSA+ ++G RWWL AEDP+QCLAAC L AL+ P S LPIH
Sbjct: 824 EQFTMDHLDDVLDSADKGLHGRRWWLKAEDPWQCLAACCELRNALRHPDPTQYPSRLPIH 883
Query: 712 QDGSCNGLQHYAALGRNTLEAAAVNLVAGEKPADVYSEIAVRVHEIMKRDSNKDPSK-HP 770
QDGSCNGLQHYAALG +++ A VNL ++P+DVY+ +A E +K++ ++ ++ HP
Sbjct: 884 QDGSCNGLQHYAALGGDSVGAQQVNLEPSDRPSDVYTGVA----EFVKKEVAREAAQGHP 939
Query: 771 QALLAKILIDQVDRKLVKQTVMTSVYGVTFVGAREQIKRRLEEKGHITD----DRQLFAA 826
+AKIL ++ RK+VKQTVMT+VYGVTF+GA Q++++L + H D D++
Sbjct: 940 ---IAKILDGRITRKIVKQTVMTNVYGVTFMGAMRQVRKQLID--HYPDLSYEDKK--NG 992
Query: 827 ACYAAKVTLTALGEIFEAARSIMGWLGDCAKVIASENQP--------------------- 865
+ Y A+ ALG +F A I WLGDCA I + P
Sbjct: 993 SLYIARKIFEALGTMFNGAHEIQHWLGDCASRITTSLSPEQIEQIAKEALTPSSSGRSAA 1052
Query: 866 ------------VRWTTPLGLPVVQPYCKNERHLIRTSLQVLAL--QREGNLVKIRKQRT 911
V WTTPLGLPVVQPY + I T+LQ L++ ++V RKQ
Sbjct: 1053 KLKDPSEKFRSTVIWTTPLGLPVVQPYRVRKARRITTTLQDLSIVDTNSEDVVSKRKQLQ 1112
Query: 912 AFPPNFVHSLDGSHMMMTAVACRDAGLHFAGL 943
AFPPNF+HSLD +HM+M+A AC AGL F+ +
Sbjct: 1113 AFPPNFIHSLDATHMIMSANACNQAGLTFSAV 1144
>gi|260942581|ref|XP_002615589.1| hypothetical protein CLUG_04471 [Clavispora lusitaniae ATCC 42720]
gi|238850879|gb|EEQ40343.1| hypothetical protein CLUG_04471 [Clavispora lusitaniae ATCC 42720]
Length = 1311
Score = 431 bits (1109), Expect = e-118, Method: Compositional matrix adjust.
Identities = 271/752 (36%), Positives = 410/752 (54%), Gaps = 84/752 (11%)
Query: 230 AIEREQKMQRTKKQKAAYAPHIELLPADKVAVIVMHKMMGLVMAGHEDRCVQVVQAAVHI 289
++ E+K Q K ++ YAP++ L+P K++VI + +++ L G ++ +A + +
Sbjct: 445 SLSSEEKKQM--KDRSFYAPYLVLIPPKKLSVITILELLKLNSTGGIVDGMRTARAVISV 502
Query: 290 GMAIEQEIRIHSFLEKTKNYKRKKIIADTEEVLSKEKELLRKRVNSLIKSKRVMEAQKLL 349
G AIE E YK + ++A EK L ++ S + K+++ +K
Sbjct: 503 GKAIELE------------YKSQGLVA-------AEKRFLGRKAKSSNQWKKILRNRKPS 543
Query: 350 KNEE--TKPWGRDTQAKLGSRLVELLIETAYVQHPVNPADYSP----PDVRPAFRHRFKT 403
+E + W AKLGS L LL+ A V PV D + +PAF H ++
Sbjct: 544 GDEAGLSTEWDYPVYAKLGSVLTSLLLHVAKV--PVTGTDPTTGKQVKGKQPAFHHTYQF 601
Query: 404 ILKHPGQKTTKRYGVVECDPLVLEGLDRSAKHMLIPYVPMLVPP-----KKWKGYNKGGY 458
+ +R G+++ +++ L A + LI V + P W +N+GGY
Sbjct: 602 V-------NGQRLGIIKLHKNLVKQL---ASNTLINSVQPQLLPMLLPPSDWTSHNQGGY 651
Query: 459 LFLPSYVMRTHGSRKQQEALKSVT-GNCMKKVFEALDTLGSTKWRVNKQVLSVLESIWVS 517
F PS ++R S + +K+ + N + V+ L+ LG T W +N +VL V+ W +
Sbjct: 652 RFTPSTLVRIKDSAETVAYVKAASEANNLDDVYRGLNVLGHTPWTINAKVLEVISQYWNT 711
Query: 518 GG---NIAGLVDRNDVLIPEKPLSEDMTEVQKWKWSVRKAKKINQERHSQRCDTELKLSV 574
G +I +VD ++ P +E + +V+ ++ VR SQRCDT KL +
Sbjct: 712 GEAFLDIPPVVDEPELPPPLPLNAEPLEKVE-YQRKVRHVLNEAAAYRSQRCDTNYKLEI 770
Query: 575 ARRMKDEEGFYYPHNLDFRGRAYPMHPHLNHLSSDVCRGVLEFAEGRPLGKSGLRWLKIH 634
AR E+ Y+PHN+DFRGRAYP+ PHLNHL +D+ R + F EGR LG+ GL WLKIH
Sbjct: 771 ARAFVGEK-MYFPHNVDFRGRAYPLPPHLNHLGNDLTRSLFLFWEGRELGERGLEWLKIH 829
Query: 635 LANLFSGGVEKLSHDGRLAFVENHLYEIFDSAENPINGSRWWLTAEDPFQCLAACINLSE 694
LAN++ G++K R FV+++L +F+SA +P GS+WW E P+Q L+ C L E
Sbjct: 830 LANVY--GMDKAPLAQRAQFVDDNLEHVFESARDPTGGSKWWTKGEKPWQVLSVCFELLE 887
Query: 695 ALKSSSPHSVISHLPIHQDGSCNGLQHYAALGRNTLEAAAVNLVAGEKPADVYSEIAVRV 754
A K P +SH+P+HQDG+CNGLQHYAALG + A VNLV ++P DVY +A V
Sbjct: 888 AYKLDDPTKYVSHVPVHQDGTCNGLQHYAALGGDIEGAKQVNLVPADRPQDVYKFVAGLV 947
Query: 755 HEIMKRDSNKDPSKHPQALLAKILIDQVDRKLVKQTVMTSVYGVTFVGAREQIKRRLEEK 814
+ ++ ++ A L ++ RK+VKQTVMT+VYGVTFVGA QI+++L
Sbjct: 948 EKRLQAEAEAGNK------YAIFLQGKISRKVVKQTVMTNVYGVTFVGAVAQIEKQL--- 998
Query: 815 GHITDDRQLFAAACYAAKVT---LTALGEIFEAARSIMGWLGDCAKVIA----------- 860
GH+ + + YA +T ++ E+FE A I WLG+ AK I+
Sbjct: 999 GHLFEKDDYDSVTLYARYLTSLVFASMRELFEGAHLIQDWLGESAKRISKSVRIDYEEKS 1058
Query: 861 --SENQP-----VRWTTPLGLPVVQPYCKNERHLIRTSLQVLALQREGNLVKI--RKQRT 911
+ N+P V WTTPLGLP VQPY +R ++ T+LQ +++ ++ RKQ+T
Sbjct: 1059 AKNANKPSHLSSVIWTTPLGLPCVQPYRATKRQIVSTNLQDISISDPFGATQVDSRKQQT 1118
Query: 912 AFPPNFVHSLDGSHMMMTAVACRDAGLHFAGL 943
AFPPNF+HSLD +HM+MTA AC + LHFA +
Sbjct: 1119 AFPPNFIHSLDATHMLMTAAACGEDNLHFASV 1150
>gi|346973344|gb|EGY16796.1| DNA-directed RNA polymerase [Verticillium dahliae VdLs.17]
Length = 1409
Score = 431 bits (1108), Expect = e-118, Method: Compositional matrix adjust.
Identities = 272/765 (35%), Positives = 412/765 (53%), Gaps = 94/765 (12%)
Query: 244 KAAYAPHIEL-LPADKVAVIVMHKMMGLVMAGHEDRCVQVVQAAVHIGMAIEQEIR---- 298
+ Y P + L P+ AV ++ + + G D+ + + A + E++IR
Sbjct: 431 RCTYGPFLRLSTPSRLAAVTILGTLSSTAILG-VDKGMPLSAALSSLAKLAEEDIRAQLT 489
Query: 299 IHSFLEKTKNYKRKKIIADTEEVLSKEKELLRKRVNSLIKSKRVMEAQKLLKNEETK--- 355
+ + KT KR++++ +V SK +L R + E + L K+ E +
Sbjct: 490 VQNSKTKTNKSKRRRVV----QVASKSSKLDAVRAELGAEG----EVKPLAKDTEPRADT 541
Query: 356 PWGRDTQAKLGSRLVELLIETAYV----QHPVNPADYSPPDVRPAFRHRFKTILKHPGQK 411
PW +AK+ + L+ LI+TA + +HP S +PAF H + +
Sbjct: 542 PWPVAVKAKVAAALLSALIDTAKIKVVKEHPETKTLIS--QYQPAFSHATQL-------R 592
Query: 412 TTKRYGVVECDPLVLEGLDRSAK-HMLIPYVPMLVPPKKWKGYNKGGYLFLPSYVMRT-H 469
K+ G+V + ++ + R + L ++PM+V P+ W ++KGG+L S ++R H
Sbjct: 593 RGKKIGMVLLNKELVNIMKREPQGDFLAKHLPMVVKPEPWSKFDKGGFLESTSNLVRVKH 652
Query: 470 GSRKQQ---EALKSVTGNCMKKVFEALDTLGSTKWRVNKQVLSVLESIWVSGGNIAGLVD 526
G + Q+ EA ++ M ++F+ LD LG T WR+N +L V+ + W SG +A +
Sbjct: 653 GDKDQRIYTEA--AIARGDMDQIFKGLDVLGQTAWRINAPILEVMLAAWNSGTALANIPA 710
Query: 527 RN-DVLIPEKPL-SEDMTEVQKWKWSVRKAKKINQERHSQRCDTELKLSVARRMKDEEGF 584
N DV +P +P SED TE + W +V+ A+ HS RC +L +AR +++ F
Sbjct: 711 LNPDVHVPTEPAASEDPTERRLWLRAVKAAENERGGLHSVRCFMNFQLEIARAFRNQT-F 769
Query: 585 YYPHNLDFRGRAYPMHPHLNHLSSDVCRGVLEFAEGRPLGKSGLRWLKIHLANLFSGGVE 644
Y+PHN+DFRGRAYP+ +LNH+ +D RG+L FA+G+ LG+ GL+WLK+HLAN++ G +
Sbjct: 770 YFPHNIDFRGRAYPLPTYLNHMGADHVRGLLRFADGKELGEKGLKWLKVHLANVY--GFD 827
Query: 645 KLSHDGRLAFVENHLYEIFDSAENPINGSRWWLTAEDPFQCLAACINLSEALKSSSPHSV 704
K S R +F ++L IFDSA P+ G+RWWL AEDP+QCLAAC L AL+S P
Sbjct: 828 KASLRDRESFAMDNLVNIFDSASKPMEGNRWWLKAEDPWQCLAACFELKAALESPEPTKF 887
Query: 705 ISHLPIHQDGSCNGLQHYAALGRNTLEAAAVNLVAGEKPADVYSEIAVRVHEIMKRDSNK 764
+SHLP+HQDG+CNGLQHYAALG +T A VNL G+KPADVYS +A V + + +D
Sbjct: 888 VSHLPVHQDGTCNGLQHYAALGGDTWGAKQVNLEPGDKPADVYSAVANIVKDYIAKDLE- 946
Query: 765 DPSKHPQALLAKILIDQVDRKLVKQTVMTSVYGVTFVGAREQIKRRLEE---KGHITDDR 821
+ +P A+ ++ RK+VKQTVMT+VYGVTF GA++Q+ ++L+ I
Sbjct: 947 --TNNPFAIAVN---GKITRKVVKQTVMTNVYGVTFQGAKKQVLKQLDAIYPNLPIESGI 1001
Query: 822 QLFAAACYAAKVTLTALGEIFEAARSIMGWLGDCA------------------------- 856
A Y A + AL +F A I WLG+
Sbjct: 1002 SSMMLASYIATLIFKALSSMFRGAHDIQYWLGEIGGRVCRALSAEQLERIAADGIIVSPS 1061
Query: 857 ----------------KVIASENQPVRWTTPLGLPVVQPYCKNERHLIRTSLQVLALQ-- 898
++A + WTTPL +PV QPY K+ +I+TSLQ L+L
Sbjct: 1062 SVNRFKITEKKESSTDDLLAQFRATIVWTTPLRMPVAQPYRKSGTRIIKTSLQDLSLTVP 1121
Query: 899 REGNLVKIRKQRTAFPPNFVHSLDGSHMMMTAVACRDAGLHFAGL 943
+ V +KQ AFPPNF+HSLD +HM+++A+ C + GL FA +
Sbjct: 1122 ERSDPVNRKKQLQAFPPNFIHSLDATHMLLSALECSELGLSFAAV 1166
>gi|346319151|gb|EGX88753.1| mitochondrial DNA-directed RNA polymerase, putative [Cordyceps
militaris CM01]
Length = 1392
Score = 431 bits (1107), Expect = e-117, Method: Compositional matrix adjust.
Identities = 262/673 (38%), Positives = 370/673 (54%), Gaps = 88/673 (13%)
Query: 333 VNSLIKSKRVMEAQKLLKNEETKPWGRDTQAKLGSRLVELLIETAYVQ----HPVNPADY 388
V+ + +SK EA K ++ ++PW +A++G+ LV+ LI++A V+ HP +
Sbjct: 519 VSQITESK---EAAKRIEESASQPWSMQIKAQVGAFLVKALIDSAKVKAIKRHPTSGELV 575
Query: 389 SPPDVRPAFRHRFKTILKHPGQKTTKRYGVVECDPLVLEGLDRSA-KHMLIPYVPMLVPP 447
S +PAF H ++ P + K+ G++ ++E L R L ++PM+V P
Sbjct: 576 S--QYQPAFTH-----IQQP--RKGKKVGMLIMHNTLVEQLKREPLGDFLAKHLPMIVEP 626
Query: 448 KKWKGYNKGGYLFLPSYVMRTHGSRKQQEALKSVTGNC--MKKVFEALDTLGSTKWRVNK 505
K W+ N GG+L + V+R +Q +C MK+VF+ LD LG T W++N+
Sbjct: 627 KPWRNMNDGGFLESKTSVIRVQPGNVEQRLYAKAAVDCGDMKQVFKGLDVLGQTAWQINR 686
Query: 506 QVLSVLESIWVSG---GNIAGLVDRNDVLIPEKPLSEDMTEVQKWKWSVRKAKKINQER- 561
VL+V+ W SG N+ L + DV P +P S + K KW +R K I ER
Sbjct: 687 GVLNVMMEAWNSGEEIANMPALEPKFDV--PAEPDSTANPALHK-KW-IRDIKAIENERS 742
Query: 562 --HSQRCDTELKLSVARRMKDEEGFYYPHNLDFRGRAYPMHPHLNHLSSDVCRGVLEFAE 619
HSQRC L+L +AR +++ Y+PHN+D+RGRAYPM +LNH+ +D R +L F +
Sbjct: 743 GLHSQRCYMNLQLEIARAFRNQT-VYFPHNVDYRGRAYPMPTYLNHMGADHARALLSFEK 801
Query: 620 GRPLGKSGLRWLKIHLANLFSGGVEKLSHDGRLAFVENHLYEIFDSAENPINGSRWWLTA 679
G+PLG++GLRWLKIHLAN++ G++K S + R AF I +SA NP+NGSRWWL A
Sbjct: 802 GKPLGETGLRWLKIHLANVY--GLDKASFEEREAFANESASHIIESATNPLNGSRWWLKA 859
Query: 680 EDPFQCLAACINLSEALKSSSPHSVISHLPIHQDGSCNGLQHYAALGRNTLEAAAVNLVA 739
EDP+QCLAAC L AL+ P + +S LPI QDG+CNGLQHYAALG + A VNL
Sbjct: 860 EDPWQCLAACFELKGALELEDPTTYVSRLPIQQDGTCNGLQHYAALGGDLWGAKQVNLEP 919
Query: 740 GEKPADVYSEIAVRVHEIMKRDSNKDPSKHPQALLAKILIDQVDRKLVKQTVMTSVYGVT 799
G++PADVYS +A V E + +D+ +K+ L +L ++ RK+VKQTVMT+VYGVT
Sbjct: 920 GDRPADVYSAVADLVKEAIAKDA---AAKNKFGL---VLDGKITRKVVKQTVMTNVYGVT 973
Query: 800 FVGAREQIKRRLE----EKGHITDDRQLFAAACYAAKVTLTALGEIFEAARSIMGWLGDC 855
F GA++Q+ R+++ + G L + Y A+ TAL +F A I WLG+
Sbjct: 974 FAGAKKQVCRQIDALYPDLGKQCGIPNLM-LSTYIARHVFTALASMFRGAHDIQYWLGEI 1032
Query: 856 AKVIASENQP-------------------------------------------VRWTTPL 872
+ P V WTTPL
Sbjct: 1033 GGRVCRALTPAQLQHIADEYANGSTDNKKGKVAKASKAGKSGFDELTKQFRSTVVWTTPL 1092
Query: 873 GLPVVQPYCKNERHLIRTSLQVLALQREGNL--VKIRKQRTAFPPNFVHSLDGSHMMMTA 930
+PV QPY K IRT LQ LA + V RKQ FPPNF+HSLD SHM++TA
Sbjct: 1093 RMPVAQPYRKTTAREIRTCLQSLAYHSSDSTDPVNRRKQLQGFPPNFIHSLDASHMLLTA 1152
Query: 931 VACRDAGLHFAGL 943
+ C + GL FA +
Sbjct: 1153 LECHERGLDFAAV 1165
>gi|295667525|ref|XP_002794312.1| DNA-directed RNA polymerase [Paracoccidioides sp. 'lutzii' Pb01]
gi|226286418|gb|EEH41984.1| DNA-directed RNA polymerase [Paracoccidioides sp. 'lutzii' Pb01]
Length = 1405
Score = 430 bits (1106), Expect = e-117, Method: Compositional matrix adjust.
Identities = 261/759 (34%), Positives = 396/759 (52%), Gaps = 72/759 (9%)
Query: 233 REQKMQRTKKQKAAYAPHIELLPADKVAVIVMHKMMGLVMAGHEDRCVQVVQAAVHIGMA 292
R+ +M ++ +P++ + DK+A + + + D+ V++ +++G +
Sbjct: 429 RKTRMLPEDAKRVEISPYLRAIKMDKLAALTILSTFNALNKNGVDKGVKLTILVMYLGKS 488
Query: 293 IEQEIRIHSFLEKTKNYKRKKIIADTEEVLSKEKELLRKRVNSLIKSKRVMEAQKLLKNE 352
I E L + +N R + + + K V+ + +V + + + E
Sbjct: 489 IHDEFMAMQ-LRELENKSRSN---------GRTSKFIDKLVHKGTRKAQVQWKRLIARFE 538
Query: 353 ETK---PWGRDTQAKLGSRLVELLIETAYVQHPVNPADYSPPDVRPAFRHRFKTILKHPG 409
+++ W QAK+G+ L +L+ +A V PV D + + + F+ + +
Sbjct: 539 QSQRPVEWSPIVQAKIGACLALMLLSSATV--PVFSNDPKTNKTKRSDQMAFRRVYQ--- 593
Query: 410 QKTTKRYGVVECDPLVLEGLDRSA-KHMLIPYVPMLVPPKKWKGYNKGGYLFLPSYVMRT 468
+ R G V ++E L R +L ++PM+ PP+ W GG+L PS V+R
Sbjct: 594 LERGFRVGYVHAHDRIVEKLRREPLGDLLAKHLPMVCPPRPWTSARNGGFLESPSPVLRV 653
Query: 469 -HGSRKQQEALKSVTGNC-MKKVFEALDTLGSTKWRVNKQVLSVLESIWVSGGNIAGLV- 525
G Q +++ + VF L LG T W+VN+ VL V+ W SG IA L
Sbjct: 654 KEGDVSQLSYVETAAARGDLDTVFAGLTVLGKTGWKVNRGVLEVMLEAWNSGEEIANLAP 713
Query: 526 DRNDVLIPEKPLSEDMTEVQKWKWSVRKAKKINQERHSQRCDTELKLSVARRMKDEEGFY 585
+ D+ PE+P +ED + + + A HSQRC +L +AR ++E FY
Sbjct: 714 ETPDIPEPERPNTEDRDALIDYYRAKMHAANTRSSYHSQRCFQNFQLEIARAYRNET-FY 772
Query: 586 YPHNLDFRGRAYPMHPHLNHLSSDVCRGVLEFAEGRPLGKSGLRWLKIHLANLFSGGVEK 645
PHNLDFRGRAYPM P+ N + +D CRG+L F++GR LG SGLRWLKIHLAN+F G +K
Sbjct: 773 LPHNLDFRGRAYPMPPYFNQMGADHCRGLLLFSKGRELGTSGLRWLKIHLANVF--GFDK 830
Query: 646 LSHDGRLAFVENHLYEIFDSAENPINGSRWWLTAEDPFQCLAACINLSEALKSSSPHSVI 705
S R F +HL +I DSA N + G +WW+ A DPFQCLAACI L+ A++ P +
Sbjct: 831 ASFQEREQFSMDHLEDIRDSAINGLKGKKWWVDAADPFQCLAACIELTNAMQLEDPTKFV 890
Query: 706 SHLPIHQDGSCNGLQHYAALGRNTLEAAAVNLVAGEKPADVYSEIAVRVHEIMKRDSNKD 765
SHLP+HQDGSCNGLQHYAALG + + A VNL ++P+D+Y+ +A V +++D+
Sbjct: 891 SHLPVHQDGSCNGLQHYAALGGDIIGAQQVNLEPSDRPSDIYTGVAEHVKASIQKDAADG 950
Query: 766 PSKHPQALLAKILIDQVDRKLVKQTVMTSVYGVTFVGAREQIKRR-LEEKGHITDDRQLF 824
AK+L +++ RK+VKQTVMT+VYGVTF+GA Q++++ L+ + +
Sbjct: 951 NET------AKLLENKITRKIVKQTVMTNVYGVTFLGAIRQVRKQLLDHYPELFHSGVVG 1004
Query: 825 AAACYAAKVTLTALGEIFEAARSIMGWLGDCAKVIASENQP------------------- 865
A Y A+ ALG +F A +I WLGDCA I+ P
Sbjct: 1005 QYATYIARKIFAALGSMFTGAHNIQFWLGDCANRISQSLSPEQIETLSDGKGLEVAGNFR 1064
Query: 866 -------------------VRWTTPLGLPVVQPYCKNERHLIRTSLQVLALQ--REGNLV 904
V WTTPL LPV QPY + + LQ L+++ + +++
Sbjct: 1065 GSKKLAKAIKNPKAHFKSTVVWTTPLKLPVAQPYRDAACVRVYSDLQQLSIRNPQASDVI 1124
Query: 905 KIRKQRTAFPPNFVHSLDGSHMMMTAVACRDAGLHFAGL 943
RKQ AFPPNFVHSLD +HM ++AV C + GL F+ +
Sbjct: 1125 NKRKQLQAFPPNFVHSLDATHMFLSAVKCDELGLSFSAV 1163
>gi|119481989|ref|XP_001261023.1| mitochondrial DNA-directed RNA polymerase, putative [Neosartorya
fischeri NRRL 181]
gi|119409177|gb|EAW19126.1| mitochondrial DNA-directed RNA polymerase, putative [Neosartorya
fischeri NRRL 181]
Length = 1376
Score = 429 bits (1103), Expect = e-117, Method: Compositional matrix adjust.
Identities = 262/749 (34%), Positives = 401/749 (53%), Gaps = 74/749 (9%)
Query: 241 KKQKAAYAPHIELLPADKVAVIVMHKMMGLVMAGHEDRCVQVVQAAVHIGMAIEQEIRIH 300
+K++ Y ++ L D +A + + +M G ++ ++V IG ++ E+
Sbjct: 424 QKERCEYGVYLRCLDTDTLAALTILAVMSTFSRGGMEKGLKVSAVVSTIGKDLQDELIAE 483
Query: 301 SFLEKTKNYKRKKIIADTEEVLSKEKELLRKRVNSLIKSKRVMEAQKLLKNEETKPWGRD 360
+ L+ +++ A E + ++K+ R + ++L+ QK+ + + T W
Sbjct: 484 AALKNETGADSRRLKALKELLAGRKKKDGRAKWHALV--------QKMQQEDATIMWSPR 535
Query: 361 TQAKLGSRLVELLIETAYVQHPVNPAD----YSPPDVRPAFRHRFKTILKHPGQKTTKRY 416
AK+G+ L+ LL E + PV D ++PAF+H ++ +R
Sbjct: 536 VTAKVGAVLMSLLFEVG--KAPVTIEDPETKKKTVTMQPAFQHAYQITW-------GRRT 586
Query: 417 GVVECDPLVLEGLDRS-AKHMLIPYVPMLVPPKKWKGYNKGGYLFLPSYVMRTH-GSRKQ 474
G + P +++ + + +L ++PM+ P+ WKG GG+L S ++RT G Q
Sbjct: 587 GYLHLHPAIVQIIAKEPTADLLGRHLPMVCKPRPWKGMKDGGFLLYQSDIVRTTPGESLQ 646
Query: 475 QEALKS-VTGNCMKKVFEALDTLGSTKWRVNKQVLSVLESIWVSGGNIAGLVDRNDVLIP 533
+K+ + N ++ + LD LGST W +N+ VL+V+ W SG +A L L
Sbjct: 647 PTYIKTALENNGLEDIRRGLDNLGSTGWTINRDVLNVMLEAWNSGEAVANLAPLEPDLPL 706
Query: 534 EKPLSEDMT--EVQKWKWSVRKAKKINQERHSQRCDTELKLSVARRMKDEEGFYYPHNLD 591
+ + ++W VR+ + HS RC ++ +AR ++ FY PHN+D
Sbjct: 707 PPKPAPEAGYHAEKEWDTLVREVENRRSGLHSMRCFQNFQMELARAYRNVT-FYLPHNMD 765
Query: 592 FRGRAYPMHPHLNHLSSDVCRGVLEFAEGRPLGKSGLRWLKIHLANLFSGGVEKLSHDGR 651
FRGRAYP+ P+LN + +D RG+L F+E +PLG SGLRWLKI +ANL G +K S R
Sbjct: 766 FRGRAYPLPPYLNQMGADNSRGLLLFSEAKPLGASGLRWLKIQIANL--SGFDKASMSER 823
Query: 652 LAFVENHLYEIFDSAENPINGSRWWLTAEDPFQCLAACINLSEALKSSSPHSVISHLPIH 711
F +HL ++ DSA+ ++G RWWL AEDP+QCLAAC L AL+ P S LPIH
Sbjct: 824 EQFTMDHLDDVLDSADKGLHGRRWWLKAEDPWQCLAACCELRNALRHPDPTQYPSRLPIH 883
Query: 712 QDGSCNGLQHYAALGRNTLEAAAVNLVAGEKPADVYSEIAVRVHEIMKRDSNKDPSKHPQ 771
QDGSCNGLQHYAALG +++ A VNL ++P+DVY+ +A V + + R++ + HP
Sbjct: 884 QDGSCNGLQHYAALGGDSVGAQQVNLEPSDRPSDVYTGVAEFVKQEVAREAAQ---GHP- 939
Query: 772 ALLAKILIDQVDRKLVKQTVMTSVYGVTFVGAREQIKRRLEEK--GHITDDRQLFAAACY 829
+AKIL ++ RK+VKQTVMT+VYGVTF+GA Q++++L + DD++ + Y
Sbjct: 940 --IAKILDGRITRKIVKQTVMTNVYGVTFMGAMRQVRKQLIDHYPDLSYDDKK--NGSLY 995
Query: 830 AAKVTLTALGEIFEAARSIMGWLGDCAKVIASENQP------------------------ 865
A+ ALG +F A I WLGDCA I + P
Sbjct: 996 IARKIFEALGTMFNGAHEIQHWLGDCASRITTSLSPEQIEQIAKEALTPSSSGGSAVKLK 1055
Query: 866 ---------VRWTTPLGLPVVQPYCKNERHLIRTSLQVLAL--QREGNLVKIRKQRTAFP 914
V WTTPLGLPVVQPY + I T+LQ L++ ++V RKQ AFP
Sbjct: 1056 DPSERFRSTVIWTTPLGLPVVQPYRVRKARRITTTLQDLSIVDTNSEDVVSKRKQLQAFP 1115
Query: 915 PNFVHSLDGSHMMMTAVACRDAGLHFAGL 943
PNF+HSLD +HM+++A AC AGL F+ +
Sbjct: 1116 PNFIHSLDATHMILSANACNQAGLTFSAV 1144
>gi|358396537|gb|EHK45918.1| hypothetical protein TRIATDRAFT_292168 [Trichoderma atroviride IMI
206040]
Length = 1435
Score = 429 bits (1102), Expect = e-117, Method: Compositional matrix adjust.
Identities = 280/843 (33%), Positives = 425/843 (50%), Gaps = 107/843 (12%)
Query: 178 LRRRQVKQETEAWERMVDEYKELEAKMIEKRLAPNLPH--IKGLFLGWFGPLSEAIEREQ 235
L R + E W + K L+ + + LAP+ + W + I +E
Sbjct: 404 LERDSISSAIEKWRL---DNKTLQKRGVSTALAPSTKEGSMSQNMASWMSAMETRIAQEL 460
Query: 236 KM---QRTKKQKA-------AYAPHIELLPADKVAVIVMHKMMGLVMAGHEDRCVQVVQA 285
++ KK K+ Y P I+ ++A + + ++ + ++ + +
Sbjct: 461 RLIEQSEAKKSKSDWDLTRCIYGPFIQQGDPARLAAVTILSVINIGTVLGVEKGTPISRL 520
Query: 286 AVHIGMAIEQEIRIHS--FLEKTKNYKRK-KIIADTEEVLSKEKELLRKRVNSLIKSKRV 342
HI A++++ ++ E+ +RK K + D SK+K + + + +
Sbjct: 521 ITHIAKAVQEDTEMYQKELAERKARRQRKLKFVGDK----SKDKAEASEDIKTPLLD--T 574
Query: 343 MEAQKLLKNEETKPWGRDTQAKLGSRLVELLIETAYVQHPVNPADYSP--PDVRPAFRHR 400
E ++ L+ PW +A++GS L+++LIE+A + + +PAF H
Sbjct: 575 AEQERTLEENSKNPWTLQIKAQVGSILLQMLIESAKINVVAESSTSKELISQYQPAFSH- 633
Query: 401 FKTILKHPGQKTTKRYGVVECDPLVLEGLDRS-AKHMLIPYVPMLVPPKKWKGYNKGGYL 459
+T+L+ K+ G + + ++E L R + ++PM+V PK W + +GG+L
Sbjct: 634 -QTLLRK-----GKKVGALFFNNHLIEQLKREPVGDFIAKHLPMVVEPKPWSSFTEGGFL 687
Query: 460 FLPSYVMRTHGSRKQQE--ALKSVTGNCMKKVFEALDTLGSTKWRVNKQVLSVLESIWVS 517
+ +R +Q+ + ++ M++VF+ LD LG T W +NK L+V+ W S
Sbjct: 688 DCKTSFVRVKPGDIEQKLYSTAAIKRGDMEQVFKGLDVLGKTAWVINKDTLNVMMEAWNS 747
Query: 518 G---GNIAGLVDRNDVLIPEKPLSEDMTEVQKWKWSVRKAKKINQER---HSQRCDTELK 571
G NI L + DV PE S D + W +R K I ER HSQRC L+
Sbjct: 748 GEEIANIPPLHPKFDV-PPEPDSSADPLARKSW---IRAVKAIENERSGLHSQRCFMNLQ 803
Query: 572 LSVARRMKDEEGFYYPHNLDFRGRAYPMHPHLNHLSSDVCRGVLEFAEGRPLGKSGLRWL 631
L +AR +++ Y+PHN+D+RGRAYPM +LNH+ +D R +L+FA+G+ LG GLRWL
Sbjct: 804 LEIARAFRNQT-IYFPHNVDYRGRAYPMPTYLNHMGADHARSILKFAKGKELGVRGLRWL 862
Query: 632 KIHLANLFSGGVEKLSHDGRLAFVENHLYEIFDSAENPINGSRWWLTAEDPFQCLAACIN 691
KIHLAN++ G++K S D R AF +++ I DSA NP+ GSRWWL EDP+QCL+AC
Sbjct: 863 KIHLANVY--GLDKASFDEREAFANDNVANIIDSATNPLKGSRWWLKGEDPWQCLSACFE 920
Query: 692 LSEALKSSSPHSVISHLPIHQDGSCNGLQHYAALGRNTLEAAAVNLVAGEKPADVYSEIA 751
L AL+ P +S+LP+HQDG+CNGLQHYAALG +T A VNL GE+PADVYS +A
Sbjct: 921 LKAALELPDPTKFVSNLPVHQDGTCNGLQHYAALGGDTWGAKQVNLEPGERPADVYSAVA 980
Query: 752 VRVHEIMKRDSNKDPSKHPQALLAKILIDQVDRKLVKQTVMTSVYGVTFVGAREQIKRRL 811
V E + +D + AK L ++ RK+VKQTVMT+VYGVTF GA++QI +++
Sbjct: 981 NLVKEAIAKDLEAGNA------FAKALDGKITRKVVKQTVMTNVYGVTFSGAKKQICKQI 1034
Query: 812 E----EKGHITDDRQLFAAACYAAKVTLTALGEIFEAARSIMGWLGDCAKVIASENQP-- 865
+ G + L + Y AK AL +F A I WLG+ + P
Sbjct: 1035 DALYPNLGKECEIPNLLLST-YIAKQVFQALATMFRGAHDIQYWLGEIGGRVCRALTPAQ 1093
Query: 866 -------------------------------------------VRWTTPLGLPVVQPYCK 882
V WTTPL +PVVQPY K
Sbjct: 1094 LQQIVDSYGEGEGSTPRSSRSKAKPSSGKKVEFDDLVQQFRSSVVWTTPLKMPVVQPYRK 1153
Query: 883 NERHLIRTSLQ--VLALQREGNLVKIRKQRTAFPPNFVHSLDGSHMMMTAVACRDAGLHF 940
I+T LQ + + + + V RKQ FPPNF+HSLD SHM+++A+ C D GL F
Sbjct: 1154 TTAREIKTCLQAVIYPMSDQTDPVNRRKQLQGFPPNFIHSLDASHMLLSALECNDRGLDF 1213
Query: 941 AGL 943
A +
Sbjct: 1214 AAV 1216
>gi|116195484|ref|XP_001223554.1| hypothetical protein CHGG_04340 [Chaetomium globosum CBS 148.51]
gi|88180253|gb|EAQ87721.1| hypothetical protein CHGG_04340 [Chaetomium globosum CBS 148.51]
Length = 1414
Score = 428 bits (1101), Expect = e-117, Method: Compositional matrix adjust.
Identities = 245/638 (38%), Positives = 356/638 (55%), Gaps = 69/638 (10%)
Query: 357 WGRDTQAKLGSRLVELLIETAYV----QHPVNPADYSPPDVRPAFRHRFKTILKHPGQKT 412
W +AK+G+ L+ L++TA + +HP S +PAF H + K
Sbjct: 573 WPMLIKAKVGAVLLAALMDTAKIVVQREHPETKEKLS--QTQPAFTHAVQL-------KK 623
Query: 413 TKRYGVVECDPLVLEGLDRSAK-HMLIPYVPMLVPPKKWKGYNKGGYLFLPSYVMRTHGS 471
++ GV++ + ++E + R + L ++PM+V P W ++KGG++ P+ ++R
Sbjct: 624 GRKIGVIQPNRELIELMKREPRGEALARHLPMVVEPVPWSKFDKGGFISAPTPLIRLKNH 683
Query: 472 RKQQE--ALKSVTGNCMKKVFEALDTLGSTKWRVNKQVLSVLESIWVSGGNIAGLVDRN- 528
K Q A ++ M+++ LD LG T W++N+ V V+ W +G A L +
Sbjct: 684 EKDQRIYAEAAIERGDMEQMMRGLDVLGKTAWKINRPVFDVMLEAWNTGEEFANLPALDP 743
Query: 529 DVLIPEKPLS-EDMTEVQKWKWSVRKAKKINQERHSQRCDTELKLSVARRMKDEEGFYYP 587
+ IP +P S +D + + W SV+ A+ HS RC +L +AR +D+ FY+P
Sbjct: 744 KIPIPAEPDSTDDPMKKRVWLRSVKAAENEKSGLHSVRCFMNFQLEIARAFRDQT-FYFP 802
Query: 588 HNLDFRGRAYPMHPHLNHLSSDVCRGVLEFAEGRPLGKSGLRWLKIHLANLFSGGVEKLS 647
HN+DFRGRAYPM +LNH+ +D RG+L FA+G+PLG+ GL WLK+ L+N++ G +K S
Sbjct: 803 HNIDFRGRAYPMPTYLNHMGADHMRGLLLFAKGKPLGEKGLAWLKVQLSNVY--GFDKAS 860
Query: 648 HDGRLAFVENHLYEIFDSAENPINGSRWWLTAEDPFQCLAACINLSEALKSSSPHSVISH 707
R F N+L IFDSA+NP+ G RWWL AEDP+QCL AC L AL S P + +SH
Sbjct: 861 LQEREDFATNNLENIFDSADNPLTGKRWWLQAEDPWQCLGACFELKAALSSPDPAAYVSH 920
Query: 708 LPIHQDGSCNGLQHYAALGRNTLEAAAVNLVAGEKPADVYSEIAVRVHEIMKRDSNKDPS 767
LP+HQDG+CNGLQHYAALG +T A VNL+ GE+PADVY+ +A V E +K++ +
Sbjct: 921 LPVHQDGTCNGLQHYAALGGDTWGAQQVNLLPGERPADVYAAVAQLVQEEVKQELAEGNE 980
Query: 768 KHPQALLAKILIDQVDRKLVKQTVMTSVYGVTFVGAREQIKRRLEE-KGHITDDRQLFAA 826
AK + +++RK+VKQTVMT+VYGVTFVGA++Q++++L+ +I + L +
Sbjct: 981 ------FAKAVDGKINRKVVKQTVMTNVYGVTFVGAKKQVQKQLDSIYPNIEQETGLSST 1034
Query: 827 --ACYAAKVTLTALGEIFEAARSIMGWLGDCAKVIASENQP------------------- 865
A Y A T L +F A I WLG+ + P
Sbjct: 1035 VLASYLAGKVFTGLSTMFRGAHDIQNWLGEIGGRVCRALTPEQIDRLAGGSTEEAKTKKA 1094
Query: 866 ------------------VRWTTPLGLPVVQPYCKNERHLIRTSLQVLALQR--EGNLVK 905
+ WTTPL +PVVQPY K+ +I T LQ L L + V
Sbjct: 1095 SKSKADIEEEMNGYFRNTLVWTTPLRMPVVQPYRKSGTRMISTCLQDLILTNLDRDDPVN 1154
Query: 906 IRKQRTAFPPNFVHSLDGSHMMMTAVACRDAGLHFAGL 943
RKQ AFPPNF+HSLD SHMM++A+ C GL FA +
Sbjct: 1155 RRKQLQAFPPNFIHSLDASHMMLSALECNAIGLTFAAV 1192
>gi|398392013|ref|XP_003849466.1| hypothetical protein MYCGRDRAFT_47599 [Zymoseptoria tritici IPO323]
gi|339469343|gb|EGP84442.1| hypothetical protein MYCGRDRAFT_47599 [Zymoseptoria tritici IPO323]
Length = 1299
Score = 427 bits (1099), Expect = e-116, Method: Compositional matrix adjust.
Identities = 284/850 (33%), Positives = 432/850 (50%), Gaps = 102/850 (12%)
Query: 172 KRKFNLLRRRQVKQETEAWERMVDEYKELEAKMIEKRLAPNL--PHIKGLFLGWFGPLSE 229
+ K N +RQ+ E + E V+ +K+ + ++ +K ++ + + + W L
Sbjct: 242 EEKENRAAQRQIALERTSVEVAVERWKKADEELRKKGISTAMQTKDMSSMMWQWHQQLLP 301
Query: 230 AIEREQKMQRTKKQKAA---------YAPHIELLPADKVAVIVMHKMMGLVMAGHEDRC- 279
A++ Q+++ +K+ A Y P +ELLP + +A + M + G +D
Sbjct: 302 ALK--QELEEVQKEMADPGREHDRHLYGPFLELLPLEHIAATTIMVAMSSIAHGKKDTSG 359
Query: 280 -----VQVVQAAVHIGMAIEQEIRIHSFLEKTKNYKRKKIIADTEEVLSKEKELLRKRVN 334
V++ +G IE + + +++ +K A + + L +
Sbjct: 360 QYETDVKLSHLVSALGNTIESDCKAEKAGSQSRRGAKKARSAGRLKKSAANPALEAPDAD 419
Query: 335 SLIKSK---RVMEAQKLLKNEETKPWGRDTQAKLGSRLVELLIETAYV----QHPVNPAD 387
SK + ++LL E W + KLG+ L+ L+ETA + +HP
Sbjct: 420 KTSASKGKPKKPSNKELLAELE---WSNPVKFKLGAMLISKLVETAKLACRREHPRTKEM 476
Query: 388 YSPPDVRPAFRHRFKTILKHPGQKTTKRYGVVECDPLVLEGLDRSAKHMLIP-YVPMLVP 446
++PA H+ K I KR G + + +++ L LI +PM+V
Sbjct: 477 IE--QMQPALLHQMKWI-------RGKRQGTIAPNVELVKKLSSEPIPALIAKRMPMVVR 527
Query: 447 PKKWKGYNKGGYLFLPSYVMRTHGSRKQQE-----ALKSVTGNCMKKVFEALDTLGSTKW 501
PK WKG+ GGYL PS ++R KQ + A + G ++ V+ L L S W
Sbjct: 528 PKPWKGWEDGGYLRFPSPILRLPVGDKQGKSYFLAAAERNEGKDLETVYRGLTALSSVPW 587
Query: 502 RVNKQVLSVLESIWVSGGNIAGLVD-RNDVLIPEKPLSEDMTEVQKWKWSVRKAKKINQE 560
RV+ V V W SG IA R +P +P S D E +KW + +
Sbjct: 588 RVHPGVFKVQLDAWNSGEEIANFAPLRPATDLPPEPESTDFAERRKWLAQCHEIRNKATG 647
Query: 561 RHSQRCDTELKLSVARRMKDEEGFYYPHNLDFRGRAYPMHPHLNHLSSDVCRGVLEFAEG 620
HS+RC +L +AR + +E Y+PHNLDFRGRAYP+ P+LNH+ +D RG+L FA+G
Sbjct: 648 LHSKRCFQNFQLEIARTIVNET-IYFPHNLDFRGRAYPIPPYLNHMGADNVRGLLVFADG 706
Query: 621 RPLGKSGLRWLKIHLANLFSGGVEKLSHDGRLAFVENHLYEIFDSAENPINGSRWWLTAE 680
+ LG+ GLRWLK HLA + G +K S RL F E HL +I+DS NP+ G RWWL A+
Sbjct: 707 KELGEKGLRWLKTHLATV--AGHDKASMQERLDFTEAHLDDIYDSVRNPLTGRRWWLEAD 764
Query: 681 DPFQCLAACINLSEALKSSSPHSVISHLPIHQDGSCNGLQHYAALGRNTLEAAAVNLVAG 740
D +Q LAAC L+ AL S P +SHLP+ QDG+CNGLQHYAALG + AA VNL
Sbjct: 765 DAWQTLAACFELTAALDSPDPTKFVSHLPVQQDGTCNGLQHYAALGGDRAGAAQVNLEPS 824
Query: 741 EKPADVYSEIAVRVHEIMKRDSNKDPSKHPQALLAKILIDQVDRKLVKQTVMTSVYGVTF 800
++PADVY+ +A + +K + +KD ++ L+A++L ++ RK VKQ VMT+VYGVTF
Sbjct: 825 DRPADVYTAVA----DAVKAEVDKDAAEG--NLVAQVLQGRLTRKCVKQPVMTNVYGVTF 878
Query: 801 VGAREQIKRRLE----EKGHITDDRQLFAAACYAAKVTLTALGEIFEAARSIMGWLGDCA 856
GA+EQ++++LE E G + + Y A +LG++F+ A+SI WLG CA
Sbjct: 879 YGAKEQVRKQLEVLFPEVGPY-GPVNMGNMSHYVATKIFKSLGDMFKGAQSIQAWLGQCA 937
Query: 857 KVIASE-----------------------------------------NQPVRWTTPLGLP 875
I++ Q V WTTPL LP
Sbjct: 938 DRISTSLTPAQVEELKEETSTAAPTPAPSNPVLDTLASDVNKTKPLFKQTVVWTTPLKLP 997
Query: 876 VVQPYCKNERHLIRTSLQVLALQREG--NLVKIRKQRTAFPPNFVHSLDGSHMMMTAVAC 933
VVQPY ++ + T++Q +A+Q + + V RKQ AFPPNF+HSLD +HM+++A+ C
Sbjct: 998 VVQPYRASKPRTVSTTMQTIAIQEQHVWDPVSKRKQLQAFPPNFIHSLDATHMLLSALKC 1057
Query: 934 RDAGLHFAGL 943
+ G+ FA +
Sbjct: 1058 TEEGMTFASI 1067
>gi|270356866|gb|ACZ80653.1| putative DNA-dependent RNA polymerase RPO41 [Filobasidiella
depauperata]
Length = 1181
Score = 427 bits (1097), Expect = e-116, Method: Compositional matrix adjust.
Identities = 272/759 (35%), Positives = 412/759 (54%), Gaps = 97/759 (12%)
Query: 223 WFGPLSEAIEREQKMQRTKKQ-------KAAYAP----------------HIELLPADKV 259
W G L+ E EQ++ K Q KAA P ++ LLP DK+
Sbjct: 363 WLGELT--TELEQRLLSMKSQVEAMPESKAAVLPSKSSPTTGMKPQVLVMYLSLLPVDKL 420
Query: 260 AVIVMHKMMGLVMAGHEDRCVQVVQAAVHIGMAIEQEIRIHSF--LEKTKNYKRKKIIAD 317
A+I + ++M + +G ++V++ V +G A+E E R + + +Y + I
Sbjct: 421 ALITILEIMRMAGSGGIIDGMKVLRGMVAVGKAVETEFRAETIKNVAGIDSYHWMRTIDP 480
Query: 318 TEEVLSKE--KELLRKRVNSLIKSKRVMEAQ---KLLKNEETKPWGRDTQAKLGSRLVEL 372
+ S++ + +K N +S+R + + + +K+ T W R Q +GS LV+
Sbjct: 481 QTQKPSRQLISSVWKKIGNQAGESQRHISSSSNSEDMKDLWTPAWSRMIQLGVGSELVDA 540
Query: 373 LIETAYVQHPVNPADYSPPDV--RPAFRHRFKTILKHPGQKTTKRYGVVECDPLVLEGLD 430
L++ A V+ A V +PAF H ++ + K GV++ +P+V E L
Sbjct: 541 LLKVAKVKREATNAVTGEKVVEEQPAFTHAYEYV-------RGKCLGVIKLNPVVAERLA 593
Query: 431 RSAKHMLI--PYVPMLVPPKKWKGYNKGGYLF---LPSYVMRTHGSRKQQEALKSVT-GN 484
++I ++PMLVPP W+ ++ GGYL L VMR S +QQ+ LK+
Sbjct: 594 NDDIGVVIHPKHLPMLVPPLPWRAHDNGGYLMHSGLTVPVMRYKESLEQQKWLKAAAEAG 653
Query: 485 CMKKVFEALDTLGSTKWRVNKQVLSVLESIWVSGGNIAGLV---DRNDVLIPEKPLSEDM 541
++ VF LD L ST W++N++V V+ W G IA + + D P+KP +
Sbjct: 654 HLEPVFHGLDVLSSTPWQINRKVFDVVLEAWNQGHAIADIPPSKEMADYEFPDKPEPANQ 713
Query: 542 TEVQKWKWSVRKAKKINQER---HSQRCDTELKLSVARR-MKDEEGFYYPHNLDFRGRAY 597
+ + V K KK+ ++ H++RC + +AR +KD FY PHN+DFRGRAY
Sbjct: 714 DPQLRLLY-VEKMKKVRAQQRKDHAERCKFNYNIEIARSYLKDT--FYLPHNMDFRGRAY 770
Query: 598 PMHPHLNHLSSDVCRGVLEFAEGRPLGKSGLRWLKIHLANLFSGGVEKLSHDGRLAFVEN 657
P+ PHL+ + D+CRG+L F +PLG +GL+WLKIHLAN++ G +K S R F +
Sbjct: 771 PIPPHLSPVGDDLCRGLLTFGTKKPLGLTGLKWLKIHLANVY--GYDKASFGERAKFAAD 828
Query: 658 HLYEIFDSAENPINGSRWWLTAEDPFQCLAACINLSEALKSSSPHSVISHLPIHQDGSCN 717
+ EIFDSAENP+ G+RWWL AEDP+QCLAAC L+ AL+SS P + S LP+HQDG+CN
Sbjct: 829 NEKEIFDSAENPLTGNRWWLKAEDPWQCLAACFELTAALRSSDPAAYESALPVHQDGTCN 888
Query: 718 GLQHYAALGRNTLEAAAVNLVAGEKPADVYSEIAVRVHEIMKRDSNKDPSKHPQALLAKI 777
G+QHYAALG + A AVNL AG++PAD+Y+ + V++++ D + H A L K
Sbjct: 889 GMQHYAALGGDVRGAKAVNLEAGDRPADIYTGVVDIVNKVIAEDQRQ---CHEVASLIK- 944
Query: 778 LIDQVDRKLVKQTVMTSVYGVTFVGAREQIKRRLEEKGHITDDRQLFAAACYAAKVTLTA 837
+ RK+VKQTVMT+VYGVTFVGAR+QI ++L +G I + +FA + Y AK L
Sbjct: 945 --GPLGRKVVKQTVMTTVYGVTFVGARDQIAKQLNTRGDIAPE-HIFAVSSYIAKTVLNC 1001
Query: 838 LGEIFEAARSIMGWLGDCAKVI------------------------ASENQPVR------ 867
+G++F A++IM WL A++I A+ ++ R
Sbjct: 1002 IGDLFSGAKAIMDWLTTSARLISRSVSSQRLQEAANCFSTSTKSGKAASSRAAREFMSAV 1061
Query: 868 -WTTPLGLPVVQPYCKNERHLIRTSLQVLALQREGNLVK 905
WTTPLGLPVVQPY K + I + ++++ L++
Sbjct: 1062 IWTTPLGLPVVQPYRKAHKKQIHDGASISSVEQMSELIR 1100
>gi|302902552|ref|XP_003048669.1| hypothetical protein NECHADRAFT_95384 [Nectria haematococca mpVI
77-13-4]
gi|256729603|gb|EEU42956.1| hypothetical protein NECHADRAFT_95384 [Nectria haematococca mpVI
77-13-4]
Length = 1342
Score = 427 bits (1097), Expect = e-116, Method: Compositional matrix adjust.
Identities = 269/777 (34%), Positives = 411/777 (52%), Gaps = 89/777 (11%)
Query: 227 LSEAIEREQKMQRTKKQKAAYAPHIELLPADKVAVIVMHKMM--GLVMAGHEDRCVQVVQ 284
+ E+ ERE K + ++ Y P + ++A + + ++ G VM D+ V +++
Sbjct: 377 VEESEERESKTEE-DLERCIYGPILRAANPTRLAAVSILAVLNSGAVMG--LDKGVTMIR 433
Query: 285 AAVHIGMAIEQEIRIHSFLEKTKNYKRKKIIADT----EEVLSKEKELLRKRVNSLIKSK 340
+ +++IR K +R + + T E+V + E+ ++ L +
Sbjct: 434 LVNDVAKVAQEDIRAQIADNAAKERRRLRKVKYTANPDEQVETSEQAIIADAHEPLPEID 493
Query: 341 RVMEAQKLLKNEETKPWGRDTQAKLGSRLVELLIETAYV----QHPVNPADYSPPDVRPA 396
+A+K+ W + ++GS LV+ L+ETA V Q+ + S V+PA
Sbjct: 494 DDSDARKV--------WSTTVRIRIGSILVKSLMETAEVNVIKQNQLTREKIS--QVQPA 543
Query: 397 FRHRFKTILKHPGQKTTKRYGVVECDPLVLEGLDRS-AKHMLIPYVPMLVPPKKWKGYNK 455
F H + K+ GV +P ++E R L ++PM+ P+ WK N
Sbjct: 544 FSHMH-------AMRKGKKIGVFALNPFLVEQFKREPVGDFLAKHLPMIAEPQPWKNMNT 596
Query: 456 GGYLFLPSYVMRTHGSRKQQEALK--SVTGNCMKKVFEALDTLGSTKWRVNKQVLSVLES 513
GG+L ++R +Q+ ++ M +VF+ LD LG T WR+N ++L V+
Sbjct: 597 GGFLQSKVSLVRIKSGDDEQKLYTKAAIQRGDMDQVFKGLDVLGKTPWRINDKLLDVMVE 656
Query: 514 IWVSGGNIAGLVDRNDVL-IPEKPLSEDMTEVQKWKWSVRKAKKINQERHSQRCDTELKL 572
W +G IA + N VL P +P + D + W +++ + HSQRC L+L
Sbjct: 657 AWNTGHEIANIPALNPVLQSPPEPETPDPLVRRTWMRALKSVENHRSALHSQRCFMNLQL 716
Query: 573 SVARRMKDEEGFYYPHNLDFRGRAYPMHPHLNHLSSDVCRGVLEFAEGRPLGKSGLRWLK 632
+AR + ++ Y+PHN+D+RGRAYP+ +LNH+ +D R +L+FA G+ LG++GLRWLK
Sbjct: 717 EIARAFR-KQVIYFPHNVDYRGRAYPLPTYLNHMGADHMRSLLKFANGKELGETGLRWLK 775
Query: 633 IHLANLFSGGVEKLSHDGRLAFVENHLYEIFDSAENPINGSRWWLTAEDPFQCLAACINL 692
IH+AN++ G +K S D R AF ++L +I +SA NP++GSRWWL EDP+QCLAAC L
Sbjct: 776 IHMANVY--GFDKASFDEREAFATDNLDKIIESATNPLHGSRWWLKGEDPWQCLAACFEL 833
Query: 693 SEALKSSSPHSVISHLPIHQDGSCNGLQHYAALGRNTLEAAAVNLVAGEKPADVYSEIAV 752
A P +S+LP+HQDG+CNGLQHYAALG +T A VNL+ G +PADVYS +A
Sbjct: 834 KAAHDLPDPTKFVSNLPVHQDGTCNGLQHYAALGGDTWGAQQVNLMPGSRPADVYSAVAN 893
Query: 753 RVHEIMKRDSNKDPSKHPQALLAKILIDQVDRKLVKQTVMTSVYGVTFVGAREQIKRRLE 812
V E + +++ + LA+I D++ RK+VKQTVMT+VYGVTF GA++Q+ ++++
Sbjct: 894 LVRESISKEAES------KEALAEICKDKITRKVVKQTVMTNVYGVTFEGAKKQVAKQID 947
Query: 813 E---KGHITDDRQLFAAACYAAKVTLTALGEIFEAARSIMGWLGDC-------------- 855
H A Y AK AL +F A I WLG+C
Sbjct: 948 ALYPNLHKESGIPHLVVATYIAKHIFMALATMFRGAHDIQYWLGECGGRVCRALTPAQLD 1007
Query: 856 --------------AKVIA---SENQ----------PVRWTTPLGLPVVQPYCKNERHLI 888
AKV A ++NQ V WTTPL +PV QPY K+ I
Sbjct: 1008 QIAEEYQNPSDKATAKVRAKKPAKNQLEELSAQFRSTVVWTTPLRMPVAQPYRKSYMKEI 1067
Query: 889 RTSLQVLALQ--REGNLVKIRKQRTAFPPNFVHSLDGSHMMMTAVACRDAGLHFAGL 943
RT LQ ++ + + V RKQ FPPNF+HSLD SHM+++A+ C + GL+FA +
Sbjct: 1068 RTCLQSISYPAFDQTDPVNRRKQLQGFPPNFIHSLDASHMLLSALKCDELGLNFAAV 1124
>gi|358383250|gb|EHK20918.1| hypothetical protein TRIVIDRAFT_171102 [Trichoderma virens Gv29-8]
Length = 1317
Score = 426 bits (1095), Expect = e-116, Method: Compositional matrix adjust.
Identities = 267/761 (35%), Positives = 400/761 (52%), Gaps = 89/761 (11%)
Query: 247 YAPHIELLPADKVAVIVMHKMMGLVMAGHEDRCVQVVQAAVHIGMAIEQEIRIHSFLEKT 306
Y P ++ ++A + + ++ L ++ + + + HI A++ + ++
Sbjct: 361 YGPFVQQGEPARLAAVTILSVINLGTVLGVEKGIPISRLITHIAKAVQDDTEMYQKELAE 420
Query: 307 KNYKRKKIIADTEEVLSKEKELLRKRVNSLIKSKRVMEAQKLLKNEETKPWGRDTQAKLG 366
+ +R++ + + KE + N + E QK ++ +PW +A++G
Sbjct: 421 RKARRQRKLRFVGKPDKSGKEANGQDANPALLD--ATEQQKTMEENSREPWSIQIKAQVG 478
Query: 367 SRLVELLIETAYVQHPVNPADYSPPDV---RPAFRHRFKTILKHPGQKTTKRYGVVECDP 423
S L+++LIE+A V + V S + +PAF H +T+L+ K+ G + +
Sbjct: 479 SILLQMLIESAKV-NVVAEGSTSKELISQYQPAFNH--QTLLRK-----GKKVGALFFNT 530
Query: 424 LVLEGLDRSAKHMLIP-YVPMLVPPKKWKGYNKGGYLFLPSYVMRTHGSRKQQEALK--S 480
++E L R I ++PM+V PK W +++GG+L + ++R +Q+ +
Sbjct: 531 HLVEQLKREPMGDFIAKHLPMVVEPKPWTSFSEGGFLDSKTSLVRVKPGDVEQKLYSNAA 590
Query: 481 VTGNCMKKVFEALDTLGSTKWRVNKQVLSVLESIWVSGGNIAGLVDRNDVL-IPEKPLSE 539
+ M +VF+ LD LG T W +NK L+V+ W SG IA + N L P +P S
Sbjct: 591 IKRGDMTQVFKGLDILGKTAWIINKDTLNVMMEAWNSGEEIADIPPLNPKLEAPTEPDSS 650
Query: 540 DMTEVQKWKWSVRKAKKINQER---HSQRCDTELKLSVARRMKDEEGFYYPHNLDFRGRA 596
V+K W +R K I ER HSQRC L+L +AR +++ Y+PHN+D+RGRA
Sbjct: 651 ADPLVRK-NW-IRAVKAIENERSGLHSQRCFMNLQLEIARAFRNQT-IYFPHNVDYRGRA 707
Query: 597 YPMHPHLNHLSSDVCRGVLEFAEGRPLGKSGLRWLKIHLANLFSGGVEKLSHDGRLAFVE 656
YPM +LNH+ +D R +L+FA+G+ LG GLRWLKIHLAN++ G++K S D R AF +
Sbjct: 708 YPMPTYLNHMGADHARAILKFAKGKELGVRGLRWLKIHLANVY--GLDKASFDEREAFSD 765
Query: 657 NHLYEIFDSAENPINGSRWWLTAEDPFQCLAACINLSEALKSSSPHSVISHLPIHQDGSC 716
++ I DSA NP+ GSRWWL EDP+QCL+AC L AL+ P ISHLP+HQDG+C
Sbjct: 766 ENVANIIDSATNPLGGSRWWLKGEDPWQCLSACFELKAALELPDPTKFISHLPVHQDGTC 825
Query: 717 NGLQHYAALGRNTLEAAAVNLVAGEKPADVYSEIAVRVHEIMKRDSNKDPSKHPQALLAK 776
NGLQHYAALG +T A VNL GE+PADVYS +A V E + +D K + A+
Sbjct: 826 NGLQHYAALGGDTWGAKQVNLEPGERPADVYSAVASLVKEAIAKDMEKGNA------FAQ 879
Query: 777 ILIDQVDRKLVKQTVMTSVYGVTFVGAREQIKRRLE-------EKGHITDDRQLFAAACY 829
L ++ RK+VKQTVMT+VYGVTF GA++QI ++++ ++ I + + Y
Sbjct: 880 ALNGKITRKVVKQTVMTNVYGVTFAGAKKQICKQIDALYPNLGKECGIPN----ILLSTY 935
Query: 830 AAKVTLTALGEIFEAARSIMGWLGDCAKVIASENQP------------------------ 865
AK AL +F A I WLG+ + P
Sbjct: 936 IAKQVFQALATMFRGAHDIQYWLGEIGGRVCRALTPAQLQQIVDSYGEGEDGASRASKTR 995
Query: 866 ---------------------VRWTTPLGLPVVQPYCKNERHLIRTSLQ--VLALQREGN 902
V WTTPL +PVVQPY K I+T LQ + L + +
Sbjct: 996 KKAPTGKKVEFDDLVQQFRSSVVWTTPLRMPVVQPYRKTTAREIKTCLQAVIYPLSDQTD 1055
Query: 903 LVKIRKQRTAFPPNFVHSLDGSHMMMTAVACRDAGLHFAGL 943
V RKQ FPPNF+HSLD SHM+++A+ C GL FA +
Sbjct: 1056 PVNRRKQLQGFPPNFIHSLDASHMLLSALECDARGLDFAAV 1096
>gi|395513402|ref|XP_003775309.1| PREDICTED: LOW QUALITY PROTEIN: DNA-directed RNA polymerase,
mitochondrial [Sarcophilus harrisii]
Length = 925
Score = 426 bits (1094), Expect = e-116, Method: Compositional matrix adjust.
Identities = 260/740 (35%), Positives = 413/740 (55%), Gaps = 52/740 (7%)
Query: 215 HIKGLFLGWFGPLSEAIEREQKMQRTKKQKAAYAPHIELLPADKVAVIVMHKMMGLVMAG 274
H+K L W L + + + +KQ+A+ P + LL +++ + L
Sbjct: 134 HLKDLKSQWEEALMKTFKETKIHMSKQKQQASLFPFLCLLKNKDYVDLMLQALFNL--PP 191
Query: 275 HEDRCVQVVQAAVHIGMAIEQEIRIHSFLEKTKNYKRKKIIADTEEVLSKEKEL---LRK 331
H D + +V + +GM + + I ++ + K+ + +L+K+ +L L +
Sbjct: 192 HGDSLIHLV---MDLGMKVYNKNLIQMKMKPFVLDELKRKYMNYLHLLAKDTQLDSYLPR 248
Query: 332 RVNSLIKSKRVMEAQKLLKNEETKPWGRDTQAKLGSRLVELLIETAYVQHPVNP-ADYSP 390
++S+ + + ++ K W +LG++LVE+++++ ++ P N + +
Sbjct: 249 EHWEALESETTICSDFFIQE---KVWPDVVLVQLGTQLVEIMVQSIHM--PTNLFSSQAE 303
Query: 391 PDVRPAFRHRFKTILKHPGQKTTKRYGVVECDPLVLEGLDRSAKHMLI---PYVPMLVPP 447
+ P H + + + K+ G ++ P + + +A L +PML PP
Sbjct: 304 KKLIPVLYHVYSFL-------SVKQIGFIKPHPSFSQLVADAACTKLTFDSSVMPMLCPP 356
Query: 448 KKWKGYNKGGYLFLPSYVMRT-HGSRKQQEALKSVTGNCMKKVFEALDTLGSTKWRVNKQ 506
W + G Y+ P+ +MR G+ + Q+ L+S + V +AL+ LGS W+VN+
Sbjct: 357 MPWISPHFGAYILHPTKLMRCLDGTVQHQQLLESCPKQNLHAVLDALNQLGSCAWKVNQP 416
Query: 507 VLSVLESIWVSGGNIAGLVDRNDVLIP--EKP------LSEDMTEVQKWKW--SVRKAKK 556
VL ++ SI+ S G+ + DV P E P LS+D + +K K + + K
Sbjct: 417 VLDLIISIFNSKGS-----KKLDVPPPLSEAPVPPSYQLSKDASSSEKAKLRREIAQCHK 471
Query: 557 INQERHSQRCDTELKLSVARRMKDEEGFYYPHNLDFRGRAYPMHPHLNHLSSDVCRGVLE 616
+E +S R D KLS+A ++D+ F++PHN+DFRGR YP PH NHL SD+ R +L
Sbjct: 472 TAREMYSLRTDALYKLSIAHHLRDQI-FWFPHNMDFRGRTYPCPPHFNHLGSDMTRAILL 530
Query: 617 FAEGRPLGKSGLRWLKIHLANLFSGGVEKLSHDGRLAFVENHLYEIFDSAENPINGSRWW 676
FAEG+PLG +GL WLKIHL NL +G +K S RLA+ L +I DSA+NP+ G +WW
Sbjct: 531 FAEGKPLGPNGLDWLKIHLINL-TGLKKKESLQARLAYANEILEDILDSADNPLTGRKWW 589
Query: 677 LTAEDPFQCLAACINLSEALKSSSPHSVISHLPIHQDGSCNGLQHYAALGRNTLEAAAVN 736
+ ++P+Q LA C+ ++ A++S P + ISH PIHQDGSCNGLQHYAALGR+ + A +VN
Sbjct: 590 MDVDEPWQALACCMEIARAVRSPDPEAYISHFPIHQDGSCNGLQHYAALGRDVIGATSVN 649
Query: 737 LVAGEKPADVYSEIAVRVHEIMKRDSNKDPSKHPQALLAKILIDQVDRKLVKQTVMTSVY 796
L+ + P DVYS +A V E+ KRD+ S +A++L + RKLVKQTVMT VY
Sbjct: 650 LMPCDVPQDVYSVVAQMVEELRKRDAAAGRS------IAQVLEGFISRKLVKQTVMTVVY 703
Query: 797 GVTFVGAREQIKRRLEEKGHITDDRQLFAAACYAAKVTLTALGEIFEAARSIMGWLGDCA 856
GVT+ G R QI++RL+E + ++ A+ Y +++ ++L E+F R I WL A
Sbjct: 704 GVTYYGGRLQIEKRLKELDMFPKE-SVWEASFYISQLVFSSLSEMFSGTREIQDWLTKSA 762
Query: 857 KVIASENQPVRWTTPLGLPVVQPYCKNERHLIRTSLQVLALQREGNLVK---IRKQRTAF 913
I+ V+W TPLGLP++QPY K+++ +I SLQ L L ++ + KQ+ AF
Sbjct: 763 HFISKSGSTVQWVTPLGLPIIQPYHKSQKIVIPGSLQSLCLMSCSDVSQKPNTLKQKNAF 822
Query: 914 PPNFVHSLDGSHMMMTAVAC 933
PPNF+HSLD +HMM+TA+ C
Sbjct: 823 PPNFIHSLDSTHMMLTALHC 842
>gi|407919789|gb|EKG13012.1| DNA-directed RNA polymerase bacteriophage type [Macrophomina
phaseolina MS6]
Length = 1456
Score = 425 bits (1093), Expect = e-116, Method: Compositional matrix adjust.
Identities = 250/655 (38%), Positives = 349/655 (53%), Gaps = 93/655 (14%)
Query: 357 WGRDTQAKLGSRLVELLIETAYVQHPVNPADYSPPDVR-------PAFRHRFKTILKHPG 409
W +AK+G+ + ++E A + P + R PAF H + G
Sbjct: 558 WAPLIKAKVGALCLSKILEAAKI-----PVTREEKETRRQLTSNEPAFYH---ATVYSAG 609
Query: 410 QKTTKRYGVVECDPLVLEGLDRSA-KHMLIPYVPMLVPPKKWKGYNKGGYLFLPSYVMRT 468
+K+ G++ VL+ L R + PM+V P W GY +GGYL P +++
Sbjct: 610 RKS----GMIRLHQQVLDKLRREPMRGSFGTKYPMIVEPLPWTGYRRGGYLRYPEPIIKE 665
Query: 469 HGSRKQQE--ALKSVTGNCMKKVFEALDTLGSTKWRVNKQVLSVLESIWVSGGNIAGLVD 526
Q A+ ++ M +V L LG T W+VN+ V V+ W +G I +
Sbjct: 666 KKQDDAQRIYAMAAIEKGDMDQVLAGLSVLGKTAWKVNRDVFKVVVEAWNTGEPIGKIAP 725
Query: 527 RNDVL-IPEKPLSEDMTEVQKWKWSVRKAKKINQER---HSQRCDTELKLSVARRMKDEE 582
N + P +P E + + + K+I+ + HSQRC +L VAR KDE
Sbjct: 726 ENPKMEYPPEPGPE--ASKKDKALYLNEKKRIDNAKMSYHSQRCFQNFQLEVARAFKDEV 783
Query: 583 GFYYPHNLDFRGRAYPMHPHLNHLSSDVCRGVLEFAEGRPLGKSGLRWLKIHLANLFSGG 642
FY+PHN+DFRGRAYP+ P LNHL +D+ RG+L FA+G+ LG GL WLKIHLAN++ G
Sbjct: 784 -FYFPHNMDFRGRAYPIPPLLNHLGADLARGLLTFAKGKQLGPVGLSWLKIHLANVY--G 840
Query: 643 VEKLSHDGRLAFVENHLYEIFDSAENPINGSRWWLTAEDPFQCLAACINLSEALKSSSPH 702
+K S R AF H+ +I+DS ENP+ G +WWL AEDP+QCLA C L A S P
Sbjct: 841 YDKASLKDREAFAMEHIQDIYDSCENPLTGRKWWLKAEDPWQCLATCFELKHAFDSPDPS 900
Query: 703 SVISHLPIHQDGSCNGLQHYAALGRNTLEAAAVNLVAGEKPADVYSEIAVRVHEIMKRDS 762
ISHLP+HQDG+CNGLQHYAALG + AA VNL G++P+D+YS +A EI+K++
Sbjct: 901 QYISHLPVHQDGTCNGLQHYAALGGDKAGAAQVNLEPGDRPSDIYSAVA----EIVKKEV 956
Query: 763 NKDPSKHPQALLAKILIDQVDRKLVKQTVMTSVYGVTFVGAREQIKRRLE----EKGHIT 818
KD + A+IL + RK+VKQTVMT+VYGVTF GAR Q+ ++LE E+ +
Sbjct: 957 AKDAESGDR--FARILDGNITRKVVKQTVMTNVYGVTFTGARLQVIKQLEAILPEEYQV- 1013
Query: 819 DDRQLFAAACYAAKVTLTALGEIFEAARSIMGWLGDCAKVIASENQP------------- 865
D LF Y AK+ ALG++F A+ I WLG CA I++ P
Sbjct: 1014 -DSLLFTMGGYVAKLIFKALGQMFNGAQEIQDWLGACANRISTALTPEQIDVIEAQLKGK 1072
Query: 866 -----------------------------------VRWTTPLGLPVVQPYCKNERHLIRT 890
V WTTPL +PVVQPY +++ I T
Sbjct: 1073 HGEANSHPDSRYRKKLTKKKSSVLTKDLSSQFSATVIWTTPLKMPVVQPYRRSKSREITT 1132
Query: 891 SLQVLAL--QREGNLVKIRKQRTAFPPNFVHSLDGSHMMMTAVACRDAGLHFAGL 943
LQ L++ + + + RKQ AFPPNF+HSLD +HM+++A+ C + GL FA +
Sbjct: 1133 VLQYLSIVQPKSTDAIDKRKQLQAFPPNFIHSLDATHMLLSALKCNEIGLSFASV 1187
>gi|336270782|ref|XP_003350150.1| hypothetical protein SMAC_01041 [Sordaria macrospora k-hell]
gi|380095545|emb|CCC07018.1| unnamed protein product [Sordaria macrospora k-hell]
Length = 1407
Score = 424 bits (1091), Expect = e-116, Method: Compositional matrix adjust.
Identities = 263/783 (33%), Positives = 410/783 (52%), Gaps = 89/783 (11%)
Query: 227 LSEAIEREQKMQRTKKQ--KAAYAPHIELLPADKVAVIVMHKMMGLVMAGHEDRCVQVVQ 284
L E E E+ ++TK+ + Y P + +++A + + + + G + +
Sbjct: 410 LEEVEESEKATRKTKEDLDRCIYGPFLRQSNPERLAAVTIISTLSSLAMGGAHKGATIAS 469
Query: 285 AAVHIGMAIEQEIRIHSFLEKTKNYKRKKIIADTEEVLSKEKELLR-KRVNSLIKSKRVM 343
HI E++IR+ +K + K + ++ + LR + S +
Sbjct: 470 LITHIAKFAEEDIRV----QKAEAMLSKNTLRKSKVKQYNPRSFLRFTNTTASAGSGDMA 525
Query: 344 EAQKLLKNEETKPWGRDTQAKLGSRLVELLIETAYVQHP-VNPADYS-PPDVRPAFRHRF 401
++ + E + W + K+G+ L+ L++TA ++ +PA + +PAF H
Sbjct: 526 DSNTVDVVMEEEAWTTLIRTKVGAALLSALLDTAKIKLVREDPATKTLVTQNQPAFSHVM 585
Query: 402 KTILKHPGQKTTKRYGVVECDPLVLEGLDRS-AKHMLIPYVPMLVPPKKWKGYNKGGYLF 460
+ + K+ G + + V++ L R L ++PM+ P W + +G YL
Sbjct: 586 QL-------RRGKKVGTIIPNKAVVDLLVREPVPDFLARHLPMVTAPDPWVSFERGAYLE 638
Query: 461 LPSYVMRTHGSRKQQEALK--SVTGNCMKKVFEALDTLGSTKWRVNKQVLSVLESIWVSG 518
+ V+R ++Q+ ++ M ++F+ LD LG T W++N V V+ +W SG
Sbjct: 639 TKTPVLRLKNGEREQKLYTEAAIARGDMDQIFKGLDVLGKTGWKINHPVFKVMLEVWNSG 698
Query: 519 GNIAGLVDRNDVL-IPEKPLS-EDMTEVQKWKWSVRKAKKINQER---HSQRCDTELKLS 573
+A + N V P +P S ED T + W ++ K I ER HSQRC +L
Sbjct: 699 EQVANIPPLNPVFEQPAEPASTEDPTIKRSW---LKALKAIENERSGLHSQRCFMNFQLE 755
Query: 574 VARRMKDEEGFYYPHNLDFRGRAYPMHPHLNHLSSDVCRGVLEFAEGRPLGKSGLRWLKI 633
+AR +D+ FY+PHN+DFRGRAYP+ P+LNH+ +D RG++ F++G+PLG+SGLRWLK+
Sbjct: 756 IARAYRDQT-FYFPHNVDFRGRAYPIPPYLNHMGADHLRGLMLFSKGKPLGESGLRWLKV 814
Query: 634 HLANLFSGGVEKLSHDGRLAFVENHLYEIFDSAENPINGSRWWLTAEDPFQCLAACINLS 693
HLANL+ G +K S R F E ++ + +SA NP+NG+RWWL AEDP+QCLA C L+
Sbjct: 815 HLANLY--GFDKASLQERQEFAEENIENVRESARNPLNGNRWWLKAEDPWQCLATCFELA 872
Query: 694 EALKSSSPHSVISHLPIHQDGSCNGLQHYAALGRNTLEAAAVNLVAGEKPADVYSEIAVR 753
EAL+ P +SHLP+HQDG+CNGLQHYAALG +T A VNLV GE+PADVYS +A
Sbjct: 873 EALELEDPTKYVSHLPVHQDGTCNGLQHYAALGGDTWGAKQVNLVPGERPADVYSAVAKL 932
Query: 754 VHEIMKRDSNKDPSKHPQALLAKILIDQVDRKLVKQTVMTSVYGVTFVGAREQIKRRLEE 813
V + + D KD AK + ++ RK+VKQTVMT+VYGVT+VGA++Q+ ++++
Sbjct: 933 VIKGIDEDLAKDNE------FAKAMHGKITRKVVKQTVMTNVYGVTYVGAKKQVLKQIDA 986
Query: 814 K--GHITDDR-QLFAAACYAAKVTLTALGEIFEAARSIMGWLGDCAKVIA---------- 860
+T+ + AA Y + A+ +F+ A I WLG+ +
Sbjct: 987 AYPNLMTETGIEPPLAAAYVTQHIFRAMSTMFKGAHDIQNWLGEIGGRVCRALTPEQLDE 1046
Query: 861 ---SENQP-----------------------------------VRWTTPLGLPVVQPYCK 882
SE P + WTTPL +PVVQPY +
Sbjct: 1047 FERSERFPQGDGTATDGNQTLAAAPKKSASHKNDEILNNFQSTIIWTTPLRMPVVQPYRR 1106
Query: 883 NERHLIRTSLQ--VLALQREGNLVKIRKQRTAFPPNFVHSLDGSHMMMTAVACRDAGLHF 940
+ + T +Q V+ + + V RKQ AFPPNF+HSLD SHM+++A+ C + GL F
Sbjct: 1107 HGTKTVSTCMQDLVMTIPERSDPVNRRKQLQAFPPNFIHSLDASHMILSALHCDELGLTF 1166
Query: 941 AGL 943
A +
Sbjct: 1167 AAV 1169
>gi|344304552|gb|EGW34784.1| hypothetical protein SPAPADRAFT_47865 [Spathaspora passalidarum NRRL
Y-27907]
Length = 1287
Score = 424 bits (1091), Expect = e-116, Method: Compositional matrix adjust.
Identities = 279/832 (33%), Positives = 424/832 (50%), Gaps = 97/832 (11%)
Query: 158 LYKRIKLQEYREMKKR---KFNLLRRRQ-----VKQETEAWERMVDEYKELEAKMIEKRL 209
+Y+ ++ QE R+ FNL R++Q V+ E W+ +E K+ ++ M K L
Sbjct: 348 MYQLLETQEQRDQFNHALANFNLDRQKQMEIRGVEGAKEKWKHEYEETKKRDSIMSTKNL 407
Query: 210 APNLPHIKGLFLGWFGPLSEAIEREQK-------------MQRTKKQKAAYAPHIELLPA 256
L W+ L +++E++ K++A YAP +
Sbjct: 408 NAQL-------YEWYQKLVPLLQKERQECLDLIDDKATNQKSSENKERAVYAPFFVKIDP 460
Query: 257 DKVAVIVMHKMMGLVMAGHEDRCVQVVQAAVHIGMAIEQEIRIHSFLEKTKNYKRKKIIA 316
+K A+ + ++M L G ++ + A +G A+E + KK +
Sbjct: 461 EKAAMTTILEVMKLQSTGGISNGMRALTALQSVGKALEYDYITQKL--------SKKDLK 512
Query: 317 DTEEVLSKEKELLRKRVNSLIKSKRVMEAQKLLKNEETKPWGRDTQAKLGSRLVELLIET 376
T+ K LL V + + NE+ W +D +LG+ V L+E
Sbjct: 513 RTQTSKHKGSRLLLNLVRNAAEGD---------PNEDFG-WSQDISIRLGAVFVSFLMEV 562
Query: 377 AYVQ---HPVNPADYSPPDVRPAFRHRFKTILKHPGQKTTKRYGVVECDPLVLEGLDRSA 433
A V+ H V + AF H + I GQ R G ++ +++ ++RS+
Sbjct: 563 AKVRVSRHTVETE-------QSAFFHSIQYI---GGQ----RIGAIKLHSDLVKSINRSS 608
Query: 434 KHMLIP--YVPMLVPPKKWKGYNKGGYLFLPSYVMRTHGSRKQQEALKSVTGNC-MKKVF 490
+ ++PM V PK W GY G + P ++R S + +K+ N + +V+
Sbjct: 609 LDSCVQPQHMPMPVKPKDWDGYYGRGQVMSP--LVRVRDSPETAAYVKTAARNGNLDQVY 666
Query: 491 EALDTLGSTKWRVNKQVLSVLESIWVSGG---NIAGLVDRNDVLIPEKPLSEDMTEVQKW 547
L+ LG+T W VNK + V+ W +G +I G++D+ +L P+ S+D + K+
Sbjct: 667 AGLNVLGNTAWTVNKDIFKVISHYWNTGKEFLDIPGVLDK-PILPPKPERSDDPSIKYKY 725
Query: 548 KWSVRKAKKINQERHSQRCDTELKLSVARRMKDEEGFYYPHNLDFRGRAYPMHPHLNHLS 607
+ V + K SQRCD KL +AR E+ Y+PHNLDFRGRAYP+ PH NHL
Sbjct: 726 RKLVTQLKSEFSTMRSQRCDANYKLEIARAFIGEK-LYFPHNLDFRGRAYPISPHFNHLG 784
Query: 608 SDVCRGVLEFAEGRPLGKSGLRWLKIHLANLFSGGVEKLSHDGRLAFVENHLYEIFDSAE 667
D+ R + F +G+ LG+ GLRWLKI LANL+ G +K D R+ FVE++L +F+SA+
Sbjct: 785 GDMTRSLFLFWDGKELGERGLRWLKIQLANLY--GFDKAPFDERVKFVEDNLQNVFESAK 842
Query: 668 NPINGSRWWLTAEDPFQCLAACINLSEALKSSSPHSVISHLPIHQDGSCNGLQHYAALGR 727
NP + WW A+ P+Q L C +L A K P +SH+ +HQDG+CNGLQHYAALG
Sbjct: 843 NPYSEDAWWKKADKPWQALGVCFDLRRAYKLPDPTKYVSHMAVHQDGTCNGLQHYAALGG 902
Query: 728 NTLEAAAVNLVAGEKPADVYSEIAVRVHEIMKRDSNKDPSKHPQALLAKILIDQVDRKLV 787
+ A VNL ++P DVY+ +A V E++++D+ K+ A L D+++RK+V
Sbjct: 903 DLEGAQQVNLARADRPQDVYAYVAGIVRELLEKDAQKNNK------YALFLKDKINRKVV 956
Query: 788 KQTVMTSVYGVTFVGAREQIKRRLEEKGHITDDRQLFAAACYAAKVTLTALGEIFEAARS 847
K TVMT+VYGVT++GA Q++++LE+ L A Y A+ ++FE A
Sbjct: 957 KPTVMTNVYGVTYIGALAQVRKQLEDYFPDNQRDSLQEHARYLTTHVFAAIRQLFENAHL 1016
Query: 848 IMGWLGDCAKVIA---------SEN-----QPVRWTTPLGLPVVQPYCKNERHLIRTSLQ 893
I WLG+ A+ I+ S+N V WTTPL LP VQPY K ++T++Q
Sbjct: 1017 IQDWLGESARRISKSVSIDYKESDNVALHSSAVIWTTPLNLPCVQPYRKGTSESLKTAVQ 1076
Query: 894 VLALQR--EGNLVKIRKQRTAFPPNFVHSLDGSHMMMTAVACRDAGLHFAGL 943
L + R +V RKQ FPPNFVHSLD +HMMMTA AC + GL FA +
Sbjct: 1077 TLTINRIDGAGMVDGRKQVAGFPPNFVHSLDATHMMMTAAACGERGLKFASV 1128
>gi|121716567|ref|XP_001275845.1| mitochondrial DNA-directed RNA polymerase, putative [Aspergillus
clavatus NRRL 1]
gi|119404002|gb|EAW14419.1| mitochondrial DNA-directed RNA polymerase, putative [Aspergillus
clavatus NRRL 1]
Length = 1375
Score = 424 bits (1090), Expect = e-115, Method: Compositional matrix adjust.
Identities = 265/753 (35%), Positives = 399/753 (52%), Gaps = 79/753 (10%)
Query: 239 RTKKQKAAYAPHIELLPADKVAVIVMHKMMGLVMAGHEDRCVQVVQAAVHIGMAIEQEIR 298
R +K + Y ++ L D +A + + +M G ++ ++V IG ++ E+
Sbjct: 422 RDQKGRCEYGVYLRSLDTDTLAALTILAVMSTFSRGGMEKGLKVSAVVSTIGKDLQDELI 481
Query: 299 IHSFLEKTKNYKRKKIIADTEEVLSKEKELLRKRVNSLIKSKRVMEAQKLLKNEETKPWG 358
+ L+K ++ A E + + ++ R R +++ K+ + + T W
Sbjct: 482 AEAALKKQAGADARRAKALKEMLAQRRQKDGRTRWQAMV--------YKMQQEDSTIVWP 533
Query: 359 RDTQAKLGSRLVELLIETAYVQHPVNPADYSPPD------VRPAFRHRFKTILKHPGQKT 412
AK+G+ L+ LL E + PV D P + ++PAF+H ++
Sbjct: 534 PRVIAKVGAVLMSLLFEVG--KAPVTMED--PENKKKMVTMQPAFQHAYQITW------- 582
Query: 413 TKRYGVVECDPLVLEGLDRS-AKHMLIPYVPMLVPPKKWKGYNKGGYLFLPSYVMRTH-G 470
+R G + P +++ + + +L ++PM+ P+ WKG GG+L S ++RT G
Sbjct: 583 GRRTGYLHLHPAIVKIIAKEPTADLLGRHLPMVCKPRPWKGSKDGGFLLYQSDLVRTTPG 642
Query: 471 SRKQQEALKS-VTGNCMKKVFEALDTLGSTKWRVNKQVLSVLESIWVSGGNIAGLVDRND 529
Q +K+ + N ++++ LD LGST W VN+ VL+V+ W SG A +
Sbjct: 643 ESLQPTYIKTALENNGLEEIRRGLDNLGSTGWVVNRDVLNVMLEAWNSGEATANIAPLEP 702
Query: 530 VLIPEKPLSEDMT-EVQK-WKWSVRKAKKINQERHSQRCDTELKLSVARRMKDEEGFYYP 587
L + + E +K W VR + HS RC ++ +AR ++ FY P
Sbjct: 703 DLPLPPKPAPEAGYEAEKEWDVLVRDIENRRSGLHSMRCFQNFQMELARAYRNST-FYLP 761
Query: 588 HNLDFRGRAYPMHPHLNHLSSDVCRGVLEFAEGRPLGKSGLRWLKIHLANLFSGGVEKLS 647
HN+DFRGRAYP+ P+LN + +D RG+L F+E +PLG SGL+WLKI +ANL G +K S
Sbjct: 762 HNMDFRGRAYPLPPYLNQMGADNSRGLLLFSEAKPLGASGLKWLKIQIANL--SGFDKAS 819
Query: 648 HDGRLAFVENHLYEIFDSAENPINGSRWWLTAEDPFQCLAACINLSEALKSSSPHSVISH 707
R F +HL ++ DSA+ ++G RWWL AEDP+QCLAAC L AL+ P S
Sbjct: 820 LSEREQFAMDHLDDVLDSADKGLHGKRWWLKAEDPWQCLAACCELRNALRHPDPTQYPSR 879
Query: 708 LPIHQDGSCNGLQHYAALGRNTLEAAAVNLVAGEKPADVYSEIAVRVHEIMKRDSNKDPS 767
LPIHQDGSCNGLQHYAALG +++ A VNL ++P+DVY+ +A V + + RD+ + S
Sbjct: 880 LPIHQDGSCNGLQHYAALGGDSIGAQQVNLEPSDRPSDVYTGVAEFVKKAVARDAAQGNS 939
Query: 768 KHPQALLAKILIDQVDRKLVKQTVMTSVYGVTFVGAREQIKRRLEE---KGHITDDRQLF 824
AKIL ++ RK+VKQTVMT+VYGVTF+GA Q++++L + + D +Q
Sbjct: 940 T------AKILEGKITRKIVKQTVMTNVYGVTFMGAMRQVRKQLIDHYPELSYEDKKQ-- 991
Query: 825 AAACYAAKVTLTALGEIFEAARSIMGWLGDCAKVIASENQP------------------- 865
A Y A+ ALG +F A I WLGDCA I + P
Sbjct: 992 -GALYIARKIFEALGSMFNGAHEIQHWLGDCASRITTSLAPEQIEQIAKDALTPSKETTT 1050
Query: 866 -------------VRWTTPLGLPVVQPYCKNERHLIRTSLQVLAL--QREGNLVKIRKQR 910
V WTTPLGLPVVQPY + I+T+LQ L++ ++V RKQ
Sbjct: 1051 TKVKDPSEKFRSTVIWTTPLGLPVVQPYRVRKARRIQTTLQDLSIVDTNSEDVVSKRKQL 1110
Query: 911 TAFPPNFVHSLDGSHMMMTAVACRDAGLHFAGL 943
AFPPNF+HSLD +HM+++A AC AGL F+ +
Sbjct: 1111 QAFPPNFIHSLDATHMILSANACSRAGLTFSAV 1143
>gi|408395694|gb|EKJ74870.1| hypothetical protein FPSE_04906 [Fusarium pseudograminearum CS3096]
Length = 1353
Score = 423 bits (1087), Expect = e-115, Method: Compositional matrix adjust.
Identities = 267/769 (34%), Positives = 399/769 (51%), Gaps = 88/769 (11%)
Query: 232 EREQKMQRTKK--QKAAYAPHIELLPADKVAVIVMHKMMGLVMAGHEDRCVQVVQAAVHI 289
E E+ +T++ ++ Y P + L ++A + + ++ D+ V + + +
Sbjct: 392 ESEESENKTEEDLERCIYGPILRLGDPTRLAAVTILTLLNTSAIQGVDKGVVIQRLLNDV 451
Query: 290 GMAIEQEIR--IHSFLEKTKNYKRK-KIIADTEEVLSKEKELLRKRVNSLIKSKRVMEAQ 346
+ +IR I E K +RK K D E + E+ K + +A
Sbjct: 452 SRVAQDDIRTQIQENAELEKRRRRKVKFTGDNAETQATEE-------------KTITDAD 498
Query: 347 K--LLKNEETKPWGRDTQAKLGSRLVELLIETAYV----QHPVNPADYSPPDVRPAFRHR 400
+ L KN W +A++GS L++ LIETA V +HP++ S V+PAF H
Sbjct: 499 EPVLSKNPAMGLWSVQVRARVGSILIKSLIETAKVKVVREHPISKERIS--QVQPAFSH- 555
Query: 401 FKTILKHPGQKTTKRYGVVECDPLVLEGLDRS-AKHMLIPYVPMLVPPKKWKGYNKGGYL 459
H +K K+ G++ + ++E L R L ++PM+ P+ W+ N+GG+L
Sbjct: 556 -----MHAPRKG-KKVGMLFINADLVERLKREPMGDFLAKHLPMVSEPQPWRRINEGGFL 609
Query: 460 FLPSYVMRTHGSRKQQEALK--SVTGNCMKKVFEALDTLGSTKWRVNKQVLSVLESIWVS 517
+ ++R +Q ++ M +VF+ LD LG T WR+N VL V+ W S
Sbjct: 610 SSKATLVRLKTGDVEQRLYTKAAIKRGDMDQVFKGLDVLGKTPWRINNNVLDVMVEAWNS 669
Query: 518 GGNIAGLVDRN-DVLIPEKPLSEDMTEVQKWKWSVRKAKKINQERHSQRCDTELKLSVAR 576
G IA + +++ P +P D + W +V+ + HSQRC L+L +AR
Sbjct: 670 GDAIANMPTLTPNLVTPAEPTGSDPLLRRAWYRNVKAVENERAALHSQRCYMNLQLEIAR 729
Query: 577 RMKDEEGFYYPHNLDFRGRAYPMHPHLNHLSSDVCRGVLEFAEGRPLGKSGLRWLKIHLA 636
+ ++ Y+PHN+D+RGRAYP+ +LNH+ +D R +L FA G+ LG+ GLRWLKIHLA
Sbjct: 730 AFR-KQVIYFPHNMDYRGRAYPLPTYLNHMGADHTRALLRFANGKELGEKGLRWLKIHLA 788
Query: 637 NLFSGGVEKLSHDGRLAFVENHLYEIFDSAENPINGSRWWLTAEDPFQCLAACINLSEAL 696
NL+ G +K S R AF +L I +S NP+ GSRWWL AEDP+QCLAAC L A
Sbjct: 789 NLY--GYDKASFSEREAFATENLPNIVESVANPLGGSRWWLKAEDPWQCLAACFELKAAH 846
Query: 697 KSSSPHSVISHLPIHQDGSCNGLQHYAALGRNTLEAAAVNLVAGEKPADVYSEIAVRVHE 756
P +S LP+HQDG+CNGLQHYAALG +T A VNL+ G++PADVY +A V E
Sbjct: 847 DLEDPTKYVSSLPVHQDGTCNGLQHYAALGGDTWGAQQVNLMPGDRPADVYMAVANLVKE 906
Query: 757 IMKRDSNKDPSKHPQALLAKILIDQVDRKLVKQTVMTSVYGVTFVGAREQIKRRLEE--- 813
+ +++ K L + + ++ RK+VKQTVMT+VYGVTF GA++Q+ ++L+
Sbjct: 907 SIAKEAEKGNQ------LGQNCMGKITRKVVKQTVMTNVYGVTFSGAKQQVCKQLDALYP 960
Query: 814 KGHITDDRQLFAAACYAAKVTLTALGEIFEAARSIMGWLGD-----CAKVIASE------ 862
+ + A Y AK ALG +F A I WLG+ C + +++
Sbjct: 961 EMYKETGIPNLVTATYIAKHIFAALGTMFRGAHDIQYWLGEIGARACRALTSAQIEQLAE 1020
Query: 863 --------------------------NQPVRWTTPLGLPVVQPYCKNERHLIRTSLQVLA 896
+ WTTPL +PVVQPY K+ IRT LQ +
Sbjct: 1021 EKDTPAAGATAAATKRMELEELTSQFRSTIVWTTPLRMPVVQPYRKSTTREIRTCLQAIT 1080
Query: 897 LQREGNL--VKIRKQRTAFPPNFVHSLDGSHMMMTAVACRDAGLHFAGL 943
+G V RKQ FPPNF+HSLD SHM+++A+ C D GL+FA +
Sbjct: 1081 YPTQGRTEPVDRRKQLQGFPPNFIHSLDASHMLLSALKCDDLGLNFAAV 1129
>gi|320582765|gb|EFW96982.1| mitochondrial RNA polymerase [Ogataea parapolymorpha DL-1]
Length = 1327
Score = 422 bits (1084), Expect = e-115, Method: Compositional matrix adjust.
Identities = 264/760 (34%), Positives = 413/760 (54%), Gaps = 77/760 (10%)
Query: 227 LSEAIEREQKMQRTKK-------QKAAYAPHIELLPADKVAVIVMHKMMGLVMAGHEDRC 279
++ +E+E +++ T +K + P++ LL K A+ + +++ ++
Sbjct: 442 VARKLEKENQLEDTSSFDKERYSEKLKHGPYLTLLKPSKSAITTILEVIKTCVSSDLAHG 501
Query: 280 VQVVQAAVHIGMAIEQEIRIHSFL----EKTKNYKRKKIIADTEEVLSKEKELLRKRVNS 335
V + + IG A+E E + L + KN++ I T E +K V
Sbjct: 502 APVSKVVMAIGRAMELEFKAQRLLAADIDVNKNFR---AIRKTPE--------FKKFVRG 550
Query: 336 LIKSKRVMEAQKLLKNEETKP-----WGRDTQAKLGSRLVELLIETAYVQHPVNPADYSP 390
S+ + EA+K ++ + W D++ ++GS ++ LL++ A V V D
Sbjct: 551 AKASQLIREAEKRAESSAGQSIAFVSWDTDSRCRVGSVMLSLLLQVAKVD--VEGTDPIT 608
Query: 391 PDVR----PAFRHRFKTILKHPGQKTTKRYGVVECDPLVLE--GLDRSAKHMLIPYVPML 444
D + PAF H + + + GV++ + G +R + ++PM+
Sbjct: 609 GDTKTALAPAFYHTYD-------YQNGSKVGVIKLNTKFASKLGTERVDNTLQPHFMPMI 661
Query: 445 VPPKKWKGYNKGGYLFLPSYVMRTHGSRKQQE-ALKSVTGNCMKKVFEALDTLGSTKWRV 503
P+ W +N GGY S V++ S +Q A + M V +AL+ LGST W V
Sbjct: 662 AKPRPWTTHNDGGYYLKKSAVLKAKNSPEQAAYARTAAIKGKMDTVLQALNNLGSTAWTV 721
Query: 504 NKQVLSVLESIWVSGGNIAGLVDRNDVL-IPEKPLSE-DMTEVQKWKWSVRKAKKINQE- 560
NK+VL V+ +W +G + + L +P +P ++ + E K K RK + I +E
Sbjct: 722 NKEVLKVMIQVWNTGEEFLDIPKFRETLNLPPQPSTDASLEEFFKHK---RKCQLICREF 778
Query: 561 --RHSQRCDTELKLSVARRMKDEEGFYYPHNLDFRGRAYPMHPHLNHLSSDVCRGVLEFA 618
S RCDT KL +AR E Y+PH+LDFRGRAYPM P+ NHL +D+ RG+L+F
Sbjct: 779 SKDRSMRCDTNYKLEIARAYVGER-IYFPHSLDFRGRAYPMPPYFNHLGNDLSRGLLKFW 837
Query: 619 EGRPLGKSGLRWLKIHLANLFSGGVEKLSHDGRLAFVENHLYEIFDSAENPINGSRWWLT 678
G+ LG+ GLRWLKIH+ NL G +KLS + R+ +V++HL EIF+SA +P+ GSR W+
Sbjct: 838 NGKQLGEEGLRWLKIHVCNLM--GFDKLSLNDRVKYVDDHLDEIFESARDPLGGSRMWVN 895
Query: 679 AEDPFQCLAACINLSEALKSSSPHSVISHLPIHQDGSCNGLQHYAALGRNTLEAAAVNLV 738
A+ P+Q LA+ + L A + P ISH P+HQDG+CNGLQHYAALG + A VNLV
Sbjct: 896 ADKPWQFLASAMELERAYRLPDPTQFISHQPVHQDGTCNGLQHYAALGGDIEGARQVNLV 955
Query: 739 AGEKPADVYSEIAVRVHEIMKRDSNKDPSKHPQALLAKILIDQVDRKLVKQTVMTSVYGV 798
+KP+DVY+ +A V + ++ D + AK++ D + RKLVKQTVMTSVYGV
Sbjct: 956 PADKPSDVYTHVAHLVEKSVQEDLEAGSEE------AKLVKDVISRKLVKQTVMTSVYGV 1009
Query: 799 TFVGAREQIKRRLEEKGHITDDRQLFAAACYAAKVTLTALGEIFEAARSIMGWLGDCAKV 858
T+VGAR QI +RL++ D++ + ++ Y + A+ E+F+ A +I WL AK
Sbjct: 1010 TYVGARAQITKRLKDIEF--DEKYISMSSKYLTQKVFKAIRELFDNAHAIQDWLIIAAKR 1067
Query: 859 IASENQ-------------PVRWTTPLGLPVVQPYCKNERHLIRTSLQVLALQREGNLVK 905
I+ + V WTTP+GLPVVQPY + + ++T++Q + + + +
Sbjct: 1068 ISKSVRTDIDIPQDTDYMCSVIWTTPMGLPVVQPYREYKGRPVQTTMQTITIVDPYQVKR 1127
Query: 906 I--RKQRTAFPPNFVHSLDGSHMMMTAVACRDAGLHFAGL 943
+ RKQ + FPPNF+HSLD +HM+++A C +AGL FA +
Sbjct: 1128 VDGRKQASGFPPNFIHSLDATHMVLSANKCSEAGLVFASV 1167
>gi|46121275|ref|XP_385192.1| hypothetical protein FG05016.1 [Gibberella zeae PH-1]
Length = 1357
Score = 421 bits (1083), Expect = e-115, Method: Compositional matrix adjust.
Identities = 267/773 (34%), Positives = 399/773 (51%), Gaps = 92/773 (11%)
Query: 232 EREQKMQRTKK--QKAAYAPHIELLPADKVAVIVMHKMMGLVMAGHEDRCVQVVQAAVHI 289
E E+ +T++ ++ Y P + L ++A + + ++ D+ V + + +
Sbjct: 392 ESEESENKTEEDLERCIYGPILRLGDPTRLAAVTILTLLNTSAIQGVDKGVVIQRLLNDV 451
Query: 290 GMAIEQEIR--IHSFLEKTKNYKRK-KIIADTEEVLSKEKELLRKRVNSLIKSKRVMEAQ 346
+ +IR I E K +RK K D E + E+ K + +A
Sbjct: 452 SRVAQDDIRTQIQENAELEKRRRRKVKFTGDNAETQATEE-------------KTITDAD 498
Query: 347 K--LLKNEETKPWGRDTQAKLGSRLVELLIETAYV----QHPVNPADYSPPDVRPAFRHR 400
+ L KN W +A++GS LV+ LIETA V +HP++ S ++PAF H
Sbjct: 499 EPVLSKNPAMGLWSVQVRARVGSILVKSLIETAKVKVVREHPISKERIS--QIQPAFSH- 555
Query: 401 FKTILKHPGQKTTKRYGVVECDPLVLEGLDRS-AKHMLIPYVPMLVPPKKWKGYNKGGYL 459
H +K K+ G++ + ++E L R L ++PM+ P+ W+ N+GG+L
Sbjct: 556 -----MHAPRKG-KKVGMLFINADLVERLKREPMGDFLAKHLPMVSEPQPWRRINEGGFL 609
Query: 460 FLPSYVMRTHGSRKQQEALK--SVTGNCMKKVFEALDTLGSTKWRVNKQVLSVLESIWVS 517
+ ++R +Q ++ M +VF+ LD LG T WR+N VL V+ W S
Sbjct: 610 SSKATLVRLKTGDVEQRLYTKAAIKRGDMDQVFKGLDVLGKTPWRINNNVLDVMVEAWNS 669
Query: 518 GGNIAGLVDRN-DVLIPEKPLSEDMTEVQKWKWSVRKAKKINQERHSQRCDTELKLSVAR 576
G IA + +++ P +P D + W +V+ + HSQRC L+L +AR
Sbjct: 670 GDAIANMPTLTPNLVTPAEPTGSDPLLRRAWYRNVKAVENERAALHSQRCYMNLQLEIAR 729
Query: 577 RMKDEEGFYYPHNLDFRGRAYPMHPHLNHLSSDVCRGVLEFAEGRPLGKSGLRWLKIHLA 636
+ ++ Y+PHN+D+RGRAYP+ +LNH+ +D R +L FA G+ LG+ GLRWLKIHLA
Sbjct: 730 AFR-KQVIYFPHNMDYRGRAYPLPTYLNHMGADHTRALLRFANGKELGEKGLRWLKIHLA 788
Query: 637 NLFSGGVEKLSHDGRLAFVENHLYEIFDSAENPINGSRWWLTAEDPFQCLAACINLSEAL 696
NL+ G +K S R AF +L I +S NP+ GSRWWL AEDP+QCLAAC L A
Sbjct: 789 NLY--GYDKASFTEREAFATENLPNIVESVTNPLGGSRWWLKAEDPWQCLAACFELKAAH 846
Query: 697 KSSSPHSVISHLPIHQDGSCNGLQHYAALGRNTLEAAAVNLVAGEKPADVYSEIAVRVHE 756
P +S LP+HQDG+CNGLQHYAALG +T A VNL+ G++PADVY +A V E
Sbjct: 847 DLEDPTKYVSSLPVHQDGTCNGLQHYAALGGDTWGAQQVNLMPGDRPADVYMAVANLVKE 906
Query: 757 IMKRDSNKDPSKHPQALLAKILIDQVDRKLVKQTVMTSVYGVTFVGAREQIKRRLEE--- 813
+ +++ K L + + ++ RK+VKQTVMT+VYGVTF GA++Q+ ++L+
Sbjct: 907 SIAKEAEKGNQ------LGQNCMGKITRKVVKQTVMTNVYGVTFSGAKQQVCKQLDALYP 960
Query: 814 KGHITDDRQLFAAACYAAKVTLTALGEIFEAARSIMGWLGD-----CAKVIASE------ 862
+ + A Y AK ALG +F A I WLG+ C + +++
Sbjct: 961 EMYKETGIPNLVTATYIAKHIFAALGTMFRGAHDIQYWLGEIGARACRALTSAQIEQLAE 1020
Query: 863 ------------------------------NQPVRWTTPLGLPVVQPYCKNERHLIRTSL 892
+ WTTPL +PVVQPY K+ IRT L
Sbjct: 1021 EKDTPAAGAGATGTATATKRKELEELTSQFRSTIVWTTPLRMPVVQPYRKSTTREIRTCL 1080
Query: 893 QVLALQREGNL--VKIRKQRTAFPPNFVHSLDGSHMMMTAVACRDAGLHFAGL 943
Q + +G V RKQ FPPNF+HSLD SHM+++A+ C D GL+FA +
Sbjct: 1081 QAITYPTQGRTEPVDRRKQLQGFPPNFIHSLDASHMLLSALKCDDLGLNFAAV 1133
>gi|396464712|ref|XP_003836965.1| similar to mitochondrial DNA-directed RNA polymerase [Leptosphaeria
maculans JN3]
gi|312213521|emb|CBX89951.1| similar to mitochondrial DNA-directed RNA polymerase [Leptosphaeria
maculans JN3]
Length = 1425
Score = 421 bits (1082), Expect = e-115, Method: Compositional matrix adjust.
Identities = 284/845 (33%), Positives = 419/845 (49%), Gaps = 108/845 (12%)
Query: 181 RQVKQETEAWERMVDEYKELEAKMIEKRLAPNLPH--IKGLFLGWFGPLSEAIEREQKMQ 238
RQ++ E ++ + VD +K + KM E + L I+ + W+ L + R++
Sbjct: 363 RQLRMEQDSLDAAVDRWKREDEKMQEMGIHGVLKSKPIQAIMHNWYQALV-PLFRQRISH 421
Query: 239 RTK-----------KQKAAYAPHIELLPADKVAVIVMHKMMGLVMAGH-EDRCVQVVQA- 285
TK + +AY P + +K+A I + + + M GH ED + A
Sbjct: 422 ATKVLAAGPKDFVREDASAYGPWLTQSKPEKLAAITVARGINSCMRGHKEDGTAMKISAL 481
Query: 286 AVHIGMAI------EQEIRIHSFLEKTKNYKRKKIIADTEEVLSKEKELLRKRVNSLIKS 339
+V +G I E +R +F+ K + RK+++ E LSK S I +
Sbjct: 482 SVSLGTDIQDALNSEVAVRRAAFIRKQRKQTRKQLV----EKLSKNS----PEEASTISA 533
Query: 340 KRVMEAQKLLKNEETKPWGRDTQAKLGSRLVELLIETAYVQH-PVNPADYSPPDVR-PAF 397
+ ++L + + + KLG+ +ELL+ A + V+P AF
Sbjct: 534 TQSTTVPEVLPDFAKREIPLSIRTKLGAMCLELLLRAATMTVVAVDPKTGEEVSTNIAAF 593
Query: 398 RHRFKTILKHPGQKTTKRYGVVECDPLVLEGLDRSAKHMLIPYVPMLVPPKKWKGYNKGG 457
H+ + H G+K Y V D L+ + + S + + +PM+V PKKW Y GG
Sbjct: 594 HHQ---VSFHQGKKVG--YIVPHHD-LMAKLRNDSVRAIANVKLPMVVEPKKWTSYEDGG 647
Query: 458 YLFLPSYVMRTH-GSRKQQEALKSVTGNC-MKKVFEALDTLGSTKWRVNKQVLSVLESIW 515
Y P V+R G Q+ +S N M+KV LD LG W++N V V+ W
Sbjct: 648 YYTTPQKVVRQKLGDSAQRAYAQSAIDNGDMQKVLSGLDVLGKVPWQINNAVFDVMAQAW 707
Query: 516 VSGGNIAGLVDRNDVL--IPEKPLSEDMTEVQKWKWSVRKAKKINQERHSQRCDTELKLS 573
+G +IAGLV + PE P + +W +++ + HSQRC +L
Sbjct: 708 NNGESIAGLVSEELRVQRPPEPPADAPYRDRAEWSKKLQEYENEKGGLHSQRCFQNFQLE 767
Query: 574 VARRMKDEEGFYYPHNLDFRGRAYPMHPHLNHLSSDVCRGVLEFAEGRPLGKSGLRWLKI 633
AR E+ Y+PH++DFRGRAYP+ P LNH+ SD+ RG+L+FA G+ LG GL+WLKI
Sbjct: 768 TARAFAREKAIYFPHSVDFRGRAYPIPPILNHIGSDISRGLLKFAHGKELGPVGLQWLKI 827
Query: 634 HLANLFSGGVEKLSHDGRLAFVENHLYEIFDSAENPINGSRWWLTAEDPFQCLAACINLS 693
HLANL+ G +K S R F + + EI DSA NP+ G RWW +AEDP+QCLA C+ L
Sbjct: 828 HLANLY--GFDKASLREREQFALDKMDEIRDSATNPLTGRRWWASAEDPWQCLACCMELK 885
Query: 694 EALKSSSPHSVISHLPIHQDGSCNGLQHYAALGRNTLEAAAVNLVAGEKPADVYSEIAVR 753
A P +S LP+HQDG+CNGLQHYAALG + A VNL ++P D+Y+ +A
Sbjct: 886 SAFDLPDPTRYVSQLPVHQDGTCNGLQHYAALGGDHAGARQVNLEPSDRPQDIYTGVAEL 945
Query: 754 VHEIMKRDSNKDPSKHPQALLAKILIDQVDRKLVKQTVMTSVYGVTFVGAREQIKRRLEE 813
V E + D+ K S AK + + RK+VK+TVMT+VYGVTF+GA+ Q+ L+
Sbjct: 946 VKEEVAEDAAKGKSH------AKFIEGYITRKVVKRTVMTNVYGVTFMGAKAQVYDELKN 999
Query: 814 -------KGHITDDRQLFAAACYAAKVTLTALGEIFEAARSIMGWLGDCAKVIASENQP- 865
G + L + A Y A +ALG+IF A+ I WLG+C I + P
Sbjct: 1000 IFPNFVPTGKVF---TLQSVAIYIAAKIFSALGKIFNGAQEIQYWLGECGDRITTSISPD 1056
Query: 866 ---------------------------------------------VRWTTPLGLPVVQPY 880
+ WTTPL +P+VQPY
Sbjct: 1057 QVQMIKARVEGDESIFYDAKYKPPKKINDSMKKRLSKNMEAFKTSIIWTTPLKMPIVQPY 1116
Query: 881 CKNERHLIRTSLQVLALQRE--GNLVKIRKQRTAFPPNFVHSLDGSHMMMTAVACRDAGL 938
K+ +IRT +Q + +Q+ + V RKQ AFPPNF+HSLD +HM+++A+ C + GL
Sbjct: 1117 RKDSVQIIRTKVQDITVQKRTMADQVDKRKQLQAFPPNFIHSLDATHMILSALKCSEMGL 1176
Query: 939 HFAGL 943
FA +
Sbjct: 1177 DFAAV 1181
>gi|354543834|emb|CCE40556.1| hypothetical protein CPAR2_105920 [Candida parapsilosis]
Length = 1292
Score = 421 bits (1082), Expect = e-114, Method: Compositional matrix adjust.
Identities = 276/835 (33%), Positives = 431/835 (51%), Gaps = 96/835 (11%)
Query: 158 LYKRIKLQEYREMKK---RKFNLLRRRQVKQETEAWERMVDEYKELEAKMIEKRLAPNL- 213
+YKR++ E RE +FN R+RQ+ E E +++K + + +KR NL
Sbjct: 345 IYKRLQTDEQREKYNAALEEFNWDRQRQI--EIRGIEGAKEKWKH-DFEEAQKRGDFNLN 401
Query: 214 PHIKGLFLGWFGPLSEAIEREQKMQR---------------TKKQKAAYAPHIELLPADK 258
+ W+ L I++E ++ + T K++A YAP + + +K
Sbjct: 402 KSMNAQCYDWYQKLIPLIKKEHELCKALLREEKVNVQDDTTTAKERAFYAPFLIKVDVEK 461
Query: 259 VAVIVMHKMMGLVMAGHEDRCVQVVQAAVHIGMAIEQEIRIHSFLEKTKNYK---RKKII 315
AVI + +++ L ++ +A +G AIE E R + + YK +K++
Sbjct: 462 AAVITILELLKLNANRGSLGGMRAAKAVGSVGRAIELEYRTSNL--AAQEYKMSISRKVV 519
Query: 316 ADTEEVLSKEKELLRKRVNSLIKSKRVMEAQKLLKNEETKP-WGRDTQAKLGSRLVELLI 374
S+ K ++RK ++SL +ET P W T++++G LV L+
Sbjct: 520 GS-----SQMKRIVRKSIDSL---------------DETDPQWDHATRSRIGGVLVSFLM 559
Query: 375 ETAYVQHPVNPADYSPPDVRPAFRHRFKTILKHPGQKTTKRYGVVECDPLVLEGLDRSA- 433
A V+ + D PAF H + + +R GV++ + + L ++
Sbjct: 560 AIAKVKVVRQSPNGVIQDYHPAFFHSMQFV-------NGQRIGVIKVHNEISKNLSGTSF 612
Query: 434 -KHMLIPYVPMLVPPKKWKGYNKGGYLFLPSYVMRTHGSRKQQEALKSVT--GNCMKKVF 490
+ + +P+LV PK W+ + G L+ ++R + + + +++ GN +K+VF
Sbjct: 613 MESIQPQSLPLLVKPKPWESFYGGVGLYSKKALVRMKDAPETEAYVRAAAKRGN-LKEVF 671
Query: 491 EALDTLGSTKWRVNKQVLSVLESIWVSGG---NIAGLVDRNDVLIPEKPLSEDMTEVQKW 547
+ L+ LG+T W +NK+V ++ W G +I +++ P ++ T +
Sbjct: 672 DGLNVLGTTAWTINKKVFDIISHYWNKGEEFLSIPPVLETAQFPAKLSPDADPSTRFEHA 731
Query: 548 KWSVRKAKKINQERHSQRCDTELKLSVARRMKDEEGFYYPHNLDFRGRAYPMHPHLNHLS 607
K + + + + R SQRCD KL +AR E+ Y+PHNLDFRGRAYP+ PHLNHL
Sbjct: 732 KATTKAVRDFSSSR-SQRCDYNYKLEIARGFIGEK-LYFPHNLDFRGRAYPISPHLNHLG 789
Query: 608 SDVCRGVLEFAEGRPLGKSGLRWLKIHLANLFSGGVEKLSHDGRLAFVENHLYEIFDSAE 667
D+ R + F EG LG+ GL WLK+ LAN++ GV+K R+ F +HL E SAE
Sbjct: 790 GDLTRSLFLFWEGTKLGERGLEWLKVQLANVY--GVDKAPISERIQFATDHLQEAIKSAE 847
Query: 668 NPINGSRWWLTAEDPFQCLAACINLSEALKSSSPHSVISHLPIHQDGSCNGLQHYAALGR 727
+P+N +WW AE P+Q L+ C L+EA K P +S+LP+HQDG+CNGLQHYAALG
Sbjct: 848 DPLN-HKWWTKAEKPWQALSVCFELAEAYKLPDPTEFVSYLPVHQDGTCNGLQHYAALGG 906
Query: 728 NTLEAAAVNLVAGEKPADVYSEIAVRVHEIMKRDS-NKDPSKHPQALLAKILIDQVDRKL 786
+ A VNL ++P DVY+ ++ V + D+ N D +A D++ RK+
Sbjct: 907 DFEGAKQVNLYPSDRPQDVYTFVSKLVQNRVNADAENGDD-------IAIFFKDKITRKV 959
Query: 787 VKQTVMTSVYGVTFVGAREQIKRRLEEKGHITDDRQLFAAACYAAKVTLTALGEIFEAAR 846
VKQTVMT+VYGVTFVGA QIK+++ + H D+ Y K ++ E+FE A
Sbjct: 960 VKQTVMTNVYGVTFVGALAQIKKQVAQ--HFGDEHDAHIYTKYLTKQVFASIRELFENAH 1017
Query: 847 SIMGWLGDCAKVIASE----------------NQPVRWTTPLGLPVVQPYCKNERHLIRT 890
I WLG+ AK I+ + V WTTPLGLP VQPY N H ++T
Sbjct: 1018 LIQDWLGEAAKRISKSVSIDYGDVSNNDSELHSSAVIWTTPLGLPCVQPYRVNAHHAVKT 1077
Query: 891 SLQVLALQREGNLVKI--RKQRTAFPPNFVHSLDGSHMMMTAVACRDAGLHFAGL 943
S+Q +++ I RKQ+ FPPNF+HSLD +HM+MTA +C ++ L FA +
Sbjct: 1078 SVQNVSITNPSGTSTIDSRKQQAGFPPNFIHSLDATHMLMTATSCGESDLQFASV 1132
>gi|432853790|ref|XP_004067873.1| PREDICTED: DNA-directed RNA polymerase, mitochondrial-like [Oryzias
latipes]
Length = 1366
Score = 421 bits (1081), Expect = e-114, Method: Compositional matrix adjust.
Identities = 240/618 (38%), Positives = 358/618 (57%), Gaps = 53/618 (8%)
Query: 349 LKNEETKPWGRDTQAKLGSRLVELLIETAYVQHPVNPADYSPPDVRPAFRHRFKTILKHP 408
L+ ++T W +LG+ LV+++++ + + + P+ + IL H
Sbjct: 692 LQGDDTS-WPHIVTLELGTHLVDIMVKNLKINSDI---------LNPSQDRKLIPILYHM 741
Query: 409 GQ-KTTKRYGVVECDPLVLEGLDRSAKHMLI--PYV-PMLVPPKKWKGYNKGGYLFLPSY 464
++T++ G ++ P++++ + + L YV PML PP W G Y+ P+
Sbjct: 742 YTFRSTRQVGFIKPHPILVQMQQEAMETRLTFDSYVMPMLCPPVPWTSVKFGAYVLTPTK 801
Query: 465 VMRTHGSRKQQEALKSVTGNCMKKVFEALDTLGSTKWRVNKQVLSVLESIWVSGGNIAGL 524
+MRT Q E L + + ++ VF++L+ LG+ W++NK +L ++ SI+ G+
Sbjct: 802 LMRTVEGATQHEQLLEKSQH-LEPVFDSLNQLGNCAWKINKPLLDIIISIFNDRGS---- 856
Query: 525 VDRNDVLIPE---------KPLSEDMTEVQK--WKWSVRKAKKINQERHSQRCDTELKLS 573
D+ D+ P P T QK K V AKK E HS R D KLS
Sbjct: 857 -DKLDIPPPMSEAPKIPHFNPQDPAYTASQKALMKREVINAKKKGSEMHSLRMDALYKLS 915
Query: 574 VARRMKDEEGFYYPHNLDFRGRAYPMHPHLNHLSSDVCRGVLEFAEGRPLGKSGLRWLKI 633
+A M+ EE F++PHN+DFRGR YP P+ NHL SDV R +L FAEG+PLG GL WLKI
Sbjct: 916 IAHHMR-EETFWFPHNMDFRGRTYPCPPYFNHLGSDVTRAMLVFAEGKPLGPKGLDWLKI 974
Query: 634 HLANLFSGGVEKLSHDGRLAFVENHLYEIFDSAENPINGSRWWLTAEDPFQCLAACINLS 693
HL NL +G ++ S GRL + + + +I DSA+NP++G +WW+ A++P+Q LA C+ ++
Sbjct: 975 HLVNL-TGLKKRSSLQGRLQYANSIMEDILDSADNPLHGRKWWMNADEPWQALACCMEIA 1033
Query: 694 EALKSSSPHSVISHLPIHQDGSCNGLQHYAALGRNTLEAAAVNLVAGEKPADVYSEIAVR 753
A +S P +SH P+HQDGSCNGLQHYAALGR+ + A +VNLV + P DVYS +A +
Sbjct: 1034 RAARSPDPAKFVSHFPVHQDGSCNGLQHYAALGRDVIGATSVNLVPCDVPQDVYSGVAQQ 1093
Query: 754 VHEIMKRDSNKDPSKHPQALLAKILIDQVDRKLVKQTVMTSVYGVTFVGAREQIKRRLEE 813
V E+ RD+ +D K +A++L + RK+VKQTVMT VYGVT G R QI++RL+E
Sbjct: 1094 VEELRARDA-RDGLK-----IAQVLEGFISRKVVKQTVMTVVYGVTRYGGRLQIEKRLKE 1147
Query: 814 -----KGHITDDRQLFAAACYAAKVTLTALGEIFEAARSIMGWLGDCAKVIASENQPVRW 868
K HI D A+ Y ++ L E+F R I WL + A++I+ V W
Sbjct: 1148 IENFPKEHIWD------ASHYLVRLVFNGLKEMFTGTREIQDWLTESARLISKCGHTVEW 1201
Query: 869 TTPLGLPVVQPYCKNERHLIRTSLQVLALQREGNLVK---IRKQRTAFPPNFVHSLDGSH 925
TPLGLP++QPY + ++++S+Q + LQ + + KQ+ AFPPNF+HSLD +H
Sbjct: 1202 VTPLGLPIIQPYHRTRNQVLKSSIQHINLQISHDSKERPDTVKQKNAFPPNFIHSLDSTH 1261
Query: 926 MMMTAVACRDAGLHFAGL 943
MM+TA+ C AGL F +
Sbjct: 1262 MMLTALHCYSAGLTFVSV 1279
>gi|238879434|gb|EEQ43072.1| hypothetical protein CAWG_01309 [Candida albicans WO-1]
Length = 1280
Score = 420 bits (1080), Expect = e-114, Method: Compositional matrix adjust.
Identities = 293/838 (34%), Positives = 418/838 (49%), Gaps = 104/838 (12%)
Query: 158 LYKRIKLQEYREMKKRK---FNLLRRRQVKQETEAWERMVDEYKELEAKMIEKRLAPNLP 214
+Y ++K +E R+ FNL R++Q+ E E +++K + + +KR NL
Sbjct: 335 MYSKLKTEEQRQAFNEALNVFNLERQKQI--EIRGIEGAKEKWKH-DFEESQKRGDLNLS 391
Query: 215 HIKGL---FLGWFGPLSEAIEREQKM---------------QRTKKQKAAYAPHIELLPA 256
KGL W + +E+E K+ K +A YAP I +
Sbjct: 392 --KGLNAQCYKWLQDVLPVLEKEYKLCEALINGNNSVIEKDDPNAKDRAMYAPFILKISP 449
Query: 257 DKVAVIVMHKMMGLVMAGHEDRCVQVVQAAVHIGMAIEQEIRIHSFLEKTKNYKRKKIIA 316
DK +I + ++ L G R + +A +G AIE E RI
Sbjct: 450 DKAIIITILELFKLHSTGGVVRGFRAYKAIQSVGKAIEAEYRIG---------------- 493
Query: 317 DTEEVLSKEKELLRKRVNSLIKSKRVM-EAQKLLK------NEETKPWGRDTQAKLGSRL 369
L K+ N L K + + QKL++ NE T W T+A++G L
Sbjct: 494 -----------LQAKKENKLFSQKHLSPQLQKLMRRTMQKGNESTPEWDDATRARIGGVL 542
Query: 370 VELLIETAYVQHPVNPADYSPPDVRPAFRHRFKTILKHPGQKTTKRYGVVECDPLVLEGL 429
V +L+ A V D PAF H + I R GV++ + L
Sbjct: 543 VSILMSVAKVNVRKETPQGLIEDFHPAFYHGMQFI-------AGNRVGVIKVHTDISNIL 595
Query: 430 D-RSAKHMLIPY-VPMLVPPKKWKGYNKGGYLFLPSYVMRTHGSRKQQEALKSVT--GNC 485
S + P +PMLV PK W + GG L+ + ++R S + + LK+ GN
Sbjct: 596 SGTSLTESIQPQALPMLVEPKPWNSFYGGGSLYSKTPLVRVKDSPETEAYLKAANERGN- 654
Query: 486 MKKVFEALDTLGSTKWRVNKQVLSVLESIWVSGGNIAGL--VDRNDVLIPEKPLSEDMTE 543
+ VFE L+ LG+T W VNK+V +V+ W SG + V L + P + D +
Sbjct: 655 LTGVFEGLNVLGNTAWTVNKKVFNVISHYWNSGEEFLSIPPVSEEPQLPQDIPGNSDPQK 714
Query: 544 VQKWKWSVRKAKKINQERHSQRCDTELKLSVARRMKDEEGFYYPHNLDFRGRAYPMHPHL 603
+ S +A SQRCD +L +AR E+ ++PHNLDFRGRAYP+ PH
Sbjct: 715 LLHHTTSKYQALDEYISNKSQRCDNNYRLEIARAFIGEK-LFFPHNLDFRGRAYPISPHF 773
Query: 604 NHLSSDVCRGVLEFAEGRPLGKSGLRWLKIHLANLFSGGVEKLSHDGRLAFVENHLYEIF 663
NHL D+ R + F +G+ LG+ GL WLKI LAN++ GV+K S R+ FV +L ++
Sbjct: 774 NHLGGDLTRSLFLFWDGKELGEEGLNWLKIQLANVY--GVDKESLAKRVEFVNENLEKVL 831
Query: 664 DSAENPINGSRWWLTAEDPFQCLAACINLSEALKSSSPHSVISHLPIHQDGSCNGLQHYA 723
+SA +P WW AE P+Q L+ C L+EA K P +SHLP+HQDG+CNGLQHYA
Sbjct: 832 ESAADPFATDAWWQKAEKPWQALSVCFELAEAYKLDDPTKFVSHLPVHQDGTCNGLQHYA 891
Query: 724 ALGRNTLEAAAVNLVAGEKPADVYSEIAVRVHEIMKRDSNKDPSKHPQALLAKILIDQVD 783
ALG + A VNL +KP DVY+ +A V +K D+ K LA L D++
Sbjct: 892 ALGGDVEGANQVNLNPSDKPQDVYTYVAKLVETRVKADAEKGDE------LAIFLQDKIK 945
Query: 784 RKLVKQTVMTSVYGVTFVGAREQIKRRLEEKGHI-TDDRQLFAAACYAAKVTLTALGEIF 842
RK+VKQTVMT+VYGVTF+GA EQI++++ H+ D AAA Y A ++ E+F
Sbjct: 946 RKVVKQTVMTNVYGVTFIGAIEQIRKQI---IHLFPKDADHHAAARYLAVQVFASIRELF 1002
Query: 843 EAARSIMGWLGDCAKVIA-------SENQ--------PVRWTTPLGLPVVQPYCKNERHL 887
E A I WL + AK I E+Q V WTTPLGLP VQPY +++
Sbjct: 1003 ENAHFIQAWLTESAKRITKSVSLDFGESQYSEQELLSTVIWTTPLGLPCVQPYRLHKKKQ 1062
Query: 888 IRTSLQVLALQREGNL--VKIRKQRTAFPPNFVHSLDGSHMMMTAVACRDAGLHFAGL 943
++T++Q L + N V RKQ+ FPPNF+HSLD +HM+MTA C + L+FA +
Sbjct: 1063 LKTAVQDLNIVMPSNTSAVDSRKQQNGFPPNFIHSLDATHMLMTATKCAEFDLNFASV 1120
>gi|68473800|ref|XP_719003.1| hypothetical protein CaO19.6041 [Candida albicans SC5314]
gi|68474009|ref|XP_718901.1| hypothetical protein CaO19.13462 [Candida albicans SC5314]
gi|46440694|gb|EAK99997.1| hypothetical protein CaO19.13462 [Candida albicans SC5314]
gi|46440800|gb|EAL00102.1| hypothetical protein CaO19.6041 [Candida albicans SC5314]
Length = 1300
Score = 420 bits (1079), Expect = e-114, Method: Compositional matrix adjust.
Identities = 293/838 (34%), Positives = 418/838 (49%), Gaps = 104/838 (12%)
Query: 158 LYKRIKLQEYREMKKRK---FNLLRRRQVKQETEAWERMVDEYKELEAKMIEKRLAPNLP 214
+Y ++K +E R+ FNL R++Q+ E E +++K + + +KR NL
Sbjct: 355 MYSKLKTEEQRQAFNEALNVFNLERQKQI--EIRGIEGAKEKWKH-DFEESQKRGDLNLS 411
Query: 215 HIKGL---FLGWFGPLSEAIEREQKM---------------QRTKKQKAAYAPHIELLPA 256
KGL W + +E+E K+ K +A YAP I +
Sbjct: 412 --KGLNAQCYKWLQDVLPVLEKEYKLCEALINGNNSVIEKDDPNAKDRAMYAPFILKISP 469
Query: 257 DKVAVIVMHKMMGLVMAGHEDRCVQVVQAAVHIGMAIEQEIRIHSFLEKTKNYKRKKIIA 316
DK +I + ++ L G R + +A +G AIE E RI
Sbjct: 470 DKAIIITILELFKLHSTGGVVRGFRAYKAIQSVGKAIEAEYRIG---------------- 513
Query: 317 DTEEVLSKEKELLRKRVNSLIKSKRVM-EAQKLLK------NEETKPWGRDTQAKLGSRL 369
L K+ N L K + + QKL++ NE T W T+A++G L
Sbjct: 514 -----------LQAKKENKLFSQKHLSPQLQKLMRRTMQKGNESTPEWDDATRARIGGVL 562
Query: 370 VELLIETAYVQHPVNPADYSPPDVRPAFRHRFKTILKHPGQKTTKRYGVVECDPLVLEGL 429
V +L+ A V D PAF H + I R GV++ + L
Sbjct: 563 VSILMSVAKVNVRKETPQGLIEDFHPAFYHGMQFI-------AGNRVGVIKVHTDISNIL 615
Query: 430 D-RSAKHMLIPY-VPMLVPPKKWKGYNKGGYLFLPSYVMRTHGSRKQQEALKSVT--GNC 485
S + P +PMLV PK W + GG L+ + ++R S + + LK+ GN
Sbjct: 616 SGTSLTESIQPQALPMLVEPKPWNSFYGGGSLYSKTPLVRVKDSPETEAYLKAANERGN- 674
Query: 486 MKKVFEALDTLGSTKWRVNKQVLSVLESIWVSGGNIAGL--VDRNDVLIPEKPLSEDMTE 543
+ VFE L+ LG+T W VNK+V +V+ W SG + V L + P + D +
Sbjct: 675 LTGVFEGLNVLGNTAWTVNKKVFNVISHYWNSGEEFLSIPPVSEEPQLPQDIPGNSDPQK 734
Query: 544 VQKWKWSVRKAKKINQERHSQRCDTELKLSVARRMKDEEGFYYPHNLDFRGRAYPMHPHL 603
+ S +A SQRCD +L +AR E+ ++PHNLDFRGRAYP+ PH
Sbjct: 735 LLHHTTSKYQALDEYISNKSQRCDNNYRLEIARAFIGEK-LFFPHNLDFRGRAYPISPHF 793
Query: 604 NHLSSDVCRGVLEFAEGRPLGKSGLRWLKIHLANLFSGGVEKLSHDGRLAFVENHLYEIF 663
NHL D+ R + F +G+ LG+ GL WLKI LAN++ GV+K S R+ FV +L ++
Sbjct: 794 NHLGGDLTRSLFLFWDGKELGEEGLNWLKIQLANVY--GVDKESLAKRVEFVNENLEKVL 851
Query: 664 DSAENPINGSRWWLTAEDPFQCLAACINLSEALKSSSPHSVISHLPIHQDGSCNGLQHYA 723
+SA +P WW AE P+Q L+ C L+EA K P +SHLP+HQDG+CNGLQHYA
Sbjct: 852 ESAADPFATDAWWQKAEKPWQALSVCFELAEAYKLDDPTKFVSHLPVHQDGTCNGLQHYA 911
Query: 724 ALGRNTLEAAAVNLVAGEKPADVYSEIAVRVHEIMKRDSNKDPSKHPQALLAKILIDQVD 783
ALG + A VNL +KP DVY+ +A V +K D+ K LA L D++
Sbjct: 912 ALGGDVEGANQVNLNPSDKPQDVYTYVAKLVETRVKADAEKGDE------LAIFLQDKIK 965
Query: 784 RKLVKQTVMTSVYGVTFVGAREQIKRRLEEKGHI-TDDRQLFAAACYAAKVTLTALGEIF 842
RK+VKQTVMT+VYGVTF+GA EQI++++ H+ D AAA Y A ++ E+F
Sbjct: 966 RKVVKQTVMTNVYGVTFIGAIEQIRKQI---IHLFPKDADHHAAARYLAVQVFASIRELF 1022
Query: 843 EAARSIMGWLGDCAKVIA-------SENQ--------PVRWTTPLGLPVVQPYCKNERHL 887
E A I WL + AK I E+Q V WTTPLGLP VQPY +++
Sbjct: 1023 ENAHFIQAWLTESAKRITKSVTLDFGESQYSEQELLSTVIWTTPLGLPCVQPYRLHKKKQ 1082
Query: 888 IRTSLQVLALQREGNL--VKIRKQRTAFPPNFVHSLDGSHMMMTAVACRDAGLHFAGL 943
++T++Q L + N V RKQ+ FPPNF+HSLD +HM+MTA C + L+FA +
Sbjct: 1083 LKTAVQDLNIVMPSNTSAVDSRKQQNGFPPNFIHSLDATHMLMTATKCAEFDLNFASV 1140
>gi|353240452|emb|CCA72321.1| related to RPO41-DNA-directed RNA polymerase, mitochondrial
[Piriformospora indica DSM 11827]
Length = 1283
Score = 420 bits (1079), Expect = e-114, Method: Compositional matrix adjust.
Identities = 270/777 (34%), Positives = 403/777 (51%), Gaps = 112/777 (14%)
Query: 233 REQKMQRTKKQKAAYAPHIELLPADKVAVIVMHKMMGLVMAGHEDRCVQVVQAAVHIGMA 292
R K R +++ + + LLP +K+ +I M +++ ++ +G + + + + IG A
Sbjct: 362 RRAKAHRKGEERTPISFFLRLLPPEKLTLICMLELLNMLASGGYEDGARTTRVLLSIGAA 421
Query: 293 IEQEIRIHSFLEKTK------NYKRKKIIADTEEVLSKEKELLRKRVNSLIKSKRVMEAQ 346
IE E H F K ++K K + ++ EL ++RV K++ +E
Sbjct: 422 IEAE---HHFQMAKKHDIPVPDFKSKSELPTYS--VAGYLELHKERV----KARLELEG- 471
Query: 347 KLLKNEETKPWGRDTQAKLGSRLVELLIETAYVQHPVNPADYSPPDVRPAFRHRFKTILK 406
+ PW ++ +A++G+ + + L+E A V D + + AF + ++
Sbjct: 472 ---RENWMPPWTQEVRARVGAFVADALMEQAKVIQTKVINDVVHEEEQQAFYNAYRY--- 525
Query: 407 HPGQKTTKRYGVVECDPLVLEGLDRSA--KHMLIPYVPMLVPPKKWKGYNKGGYLFLPSY 464
+ + GV++ + ++++ L R + + ++PM+V P+ W +N GGYL+
Sbjct: 526 ----ERGFKIGVIKMNDMIIDKLSREPPRERLHARHLPMVVRPRPWLRHNAGGYLYSNLS 581
Query: 465 VMRTHGSRKQQEALKSVTG-NCMKKVFEALDTLGSTKWRVNKQVLSVLESIWVSGGNIAG 523
VMR S +Q L+ M+ V+ LD LG T W+ L
Sbjct: 582 VMRMKESNEQTSYLREADSRGAMELVYAGLDVLGKTAWKATLAFLL-------------- 627
Query: 524 LVDRNDVLIPEKPLSE-DMTEVQKWKWSVRKAKKINQERHSQRCDTELKLSVARRMKDEE 582
L + IP PL DM + +++K HS RC T K+ +AR E+
Sbjct: 628 LTSNKRIQIP--PLDHTDMRAKADYAVAMKKLALEQAANHSDRCSTNYKMEIARTFLGEK 685
Query: 583 GFYYPHNLDFRGRAYPMHPHLNHLSSDVCRGVLEFAEGRPLGKSGLRWLKIHLANLFSGG 642
FY PHN+DFRGRAYP+ PHLNHL D+ RG+L FAEG+PLGK G+RWLKIHLANL+ G
Sbjct: 686 -FYLPHNVDFRGRAYPIPPHLNHLGDDLSRGLLLFAEGKPLGKRGIRWLKIHLANLY--G 742
Query: 643 VEKLSHDGRLAFVENHLYEIFDSAENPINGSRWWLTAEDPFQCLAACINLSEALKSSSPH 702
+K + D R F HL EI+DSAENP+ G +WWL A+DP+QCLA C+ L AL+S +P
Sbjct: 743 YDKATFDDRETFSTEHLEEIYDSAENPLTGRQWWLKADDPWQCLATCMELRNALESPNPE 802
Query: 703 SVISHLPIHQDGSCNGLQHYAALGRNTLEAAAVNLVAGEKPADVYSEIAVRVHEIMKRDS 762
S LP+HQDG+CNGLQHYAALG + + A VNL ++P+DVY+ +A ++ +
Sbjct: 803 MYESCLPVHQDGTCNGLQHYAALGGDVIGARQVNLDVSDRPSDVYTYVA----KMAEAQI 858
Query: 763 NKDPSKHPQALLAKILIDQVDRKLVKQTVMTSV-------------YGVTFVGAREQIKR 809
NKD + +A+ L ++ RKLVKQTV TS + VTF+GAR+QI +
Sbjct: 859 NKDAEGGHE--IAQKLQGRITRKLVKQTVRTSAKYSAETHQTTGHDHWVTFIGARDQIYK 916
Query: 810 RLEEKGHITDDRQLFAAACYAAKVTLTALGEIFEAARSIMGWLGDCAKVIA--------- 860
+L+ + D L+ A Y AKVTL +G +F+ A+ I WL DCA++I+
Sbjct: 917 QLKTFDDL-DGMDLYPWAIYLAKVTLNCIGTLFKGAKDIQLWLNDCARLISKSIPEDRVR 975
Query: 861 --------------------------------SENQPVRWTTPLGLPVVQPYCKNERHLI 888
+ V WTT LGLP+VQPY K R I
Sbjct: 976 LMVMAEQDARRVPGDVKQSISRQWAADKNGGKEQMTTVIWTTLLGLPIVQPYRKAGRKQI 1035
Query: 889 RTSLQVLALQ--REGNLVKIRKQRTAFPPNFVHSLDGSHMMMTAVACRDAGLHFAGL 943
T LQ + + + + V KQ +AFPPNFVHSLD +HMM+TA+ C GL FA +
Sbjct: 1036 MTQLQSVFISDPNQPHSVNTMKQVSAFPPNFVHSLDATHMMLTALQCDRQGLAFAAV 1092
>gi|255730283|ref|XP_002550066.1| hypothetical protein CTRG_04363 [Candida tropicalis MYA-3404]
gi|240132023|gb|EER31581.1| hypothetical protein CTRG_04363 [Candida tropicalis MYA-3404]
Length = 1293
Score = 419 bits (1077), Expect = e-114, Method: Compositional matrix adjust.
Identities = 291/869 (33%), Positives = 439/869 (50%), Gaps = 100/869 (11%)
Query: 131 HQLMCLEPRRRIFVQDPPWFSSIFLKGLYKRIKLQEYREMKKRKFNLLRRRQVKQETEAW 190
H L+ LEP VQ I + GL ++ + K F + + Q ++ A+
Sbjct: 309 HSLLGLEPSTESVVQFSRQVKEI-IDGLDDEQVKEDIKAGKFNHFEVYSKLQTDEQRSAF 367
Query: 191 ERMVDEY-----KELEAKMIE--------------KRLAPNLPHIKGL---FLGWFGPLS 228
++ + K++E + IE KR NL KGL W +
Sbjct: 368 SEALETFNYERQKQIEIRGIEGAKEKWKHDFEEQQKRGDLNL--TKGLNAQCYEWVQEMV 425
Query: 229 EAIERE-----------QKMQRTKKQKAAYAPHIELLPADKVAVIVMHKMMGLVMAGHED 277
I++E K K ++A YAP + +K AVI + +++ L G
Sbjct: 426 PIIQKELEACKELLNDGDKASDAKSERALYAPFFIKVDPEKAAVITILELLKLHSTGGVV 485
Query: 278 RCVQVVQAAVHIGMAIEQEIRIHSFLEKTKNYKRKKIIADTEEVLSKEKELLRKRVNSLI 337
+ +A V +G AIE E R++ +++ E LS K R+ +LI
Sbjct: 486 NGFRAYKAVVGVGKAIEGEFRMNLQVQQ-------------ENKLSSSKNN-SPRLKNLI 531
Query: 338 KSKRVMEAQKLLKNEETKP-WGRDTQAKLGSRLVELLIETAYVQHPVNPADYSPPDVRPA 396
+ + + K+E+ P W T++++G LV L+ + V+ + D+ PA
Sbjct: 532 R-------ETIKKDEDEIPEWDNVTRSRVGGVLVSALMTVSKVRVVKKTPEGVIKDLHPA 584
Query: 397 FRHRFKTILKHPGQKTTKRYGVVECDPLVLEGLDRS--AKHMLIPYVPMLVPPKKWKGYN 454
F H + I GQ R GV++ + + L + A+ + Y+PML+ PK W ++
Sbjct: 585 FYHGVQFI---GGQ----RVGVIKVHAEISKLLTGTSFAESVQPQYLPMLIRPKPWTSFH 637
Query: 455 KGGYLFLPSYVMRTHGSRKQQEALKSVT--GNCMKKVFEALDTLGSTKWRVNKQVLSVLE 512
GG LF S ++R + + + +K+ + GN + +VF+ L+ LG+T W VNK+V V+
Sbjct: 638 GGGSLFSKSPLVRMKDAPETEAYVKAASKRGN-LDQVFDGLNVLGNTAWTVNKRVFDVIS 696
Query: 513 SIWVSGGNIAGLVD-RNDVLIPEKPLSEDMTEVQKWKWSVRKAKKINQ--ERHSQRCDTE 569
W G + + +PEK L D K S+ K + + SQRCD
Sbjct: 697 HYWNKGEEFLSIPPVMEEARLPEK-LPADADPQAKLDNSIALYKGLREFAGNRSQRCDYN 755
Query: 570 LKLSVARRMKDEEGFYYPHNLDFRGRAYPMHPHLNHLSSDVCRGVLEFAEGRPLGKSGLR 629
KL +AR E Y+PHNLDFRGRAYP+ PH NHL D+ R + F EG+ LG+ GLR
Sbjct: 756 YKLEIARGFIGER-LYFPHNLDFRGRAYPISPHFNHLGGDLTRSLFLFWEGKQLGEEGLR 814
Query: 630 WLKIHLANLFSGGVEKLSHDGRLAFVENHLYEIFDSAENPINGSRWWLTAEDPFQCLAAC 689
WLK+ LAN++ GV+K S DGR+ F+++++ + SA++P WW AE P+Q L+ C
Sbjct: 815 WLKVQLANVY--GVDKESIDGRVKFIDDNIENVIASAKDPYAPDAWWQRAEKPWQALSVC 872
Query: 690 INLSEALKSSSPHSVISHLPIHQDGSCNGLQHYAALGRNTLEAAAVNLVAGEKPADVYSE 749
L EA + P +SHLP+HQDG+CNGLQHYAALG + A VNL E+P DVYS
Sbjct: 873 FELGEAYQLDDPTKFVSHLPVHQDGTCNGLQHYAALGGDIEGANQVNLNPAERPQDVYSY 932
Query: 750 IAVRVHEIMKRDSNKDPSKHPQALLAKILIDQVDRKLVKQTVMTSVYGVTFVGAREQIKR 809
+A V + ++ D+ +AK+L +++ RK+VKQTVMT+VYGVTFVGA +QIK+
Sbjct: 933 VARLVEKRVREDAANGNE------IAKLLQNEIKRKVVKQTVMTNVYGVTFVGAIQQIKK 986
Query: 810 RLEEKGHITDDRQLFAAACYAAKVTLTALGEIFEAARSIMGWLGDCAKVIASE------- 862
++ + +D A Y A ++ E+FE A I WL + A+ I
Sbjct: 987 QISHL--VPEDNSAHLYARYLANQVFISIRELFENAHLIQDWLTESARRITKSVSLDFGE 1044
Query: 863 ------NQPVRWTTPLGLPVVQPYCKNERHLIRTSLQVLALQREGNLVKI--RKQRTAFP 914
+ V WTTPLGLP VQPY ++ + TS+Q + + ++ RKQ FP
Sbjct: 1045 TDHDIHSSSVIWTTPLGLPCVQPYRIHKYRQVNTSVQSIKITAPSGTSQVDSRKQVAGFP 1104
Query: 915 PNFVHSLDGSHMMMTAVACRDAGLHFAGL 943
PNFVHSLD +HM+MTA C GL+FA +
Sbjct: 1105 PNFVHSLDATHMLMTATQCGHEGLNFASV 1133
>gi|50543664|ref|XP_499998.1| YALI0A12001p [Yarrowia lipolytica]
gi|49645863|emb|CAG83927.1| YALI0A12001p [Yarrowia lipolytica CLIB122]
Length = 1345
Score = 419 bits (1076), Expect = e-114, Method: Compositional matrix adjust.
Identities = 263/730 (36%), Positives = 393/730 (53%), Gaps = 74/730 (10%)
Query: 249 PHIELLPADKVAVIVMHKMMGL--VMAGHEDRCVQVVQAAVHIGMAIEQEIRIHSFLEKT 306
P+++L+ ++++ + +MM L + + V+ +G A+E E R + EK
Sbjct: 482 PYLKLMSPKTMSIVTIIEMMRLQTTVGRSVESGVKTTNLVTSVGQALEIEYRCSQWSEK- 540
Query: 307 KNYKRKKIIADTEEVLSKEKELLRKRVNSLIKSKRVMEAQKLLKNEETKP-WGRDTQAKL 365
L K++ L+K + L + +VME E+T P W D +AK+
Sbjct: 541 ---------------LGKKRTFLKK-LTGLKRRLKVMEMIHAEDLEDTVPAWAIDVRAKV 584
Query: 366 GSRLVELLIETAYV----QHPVNPADYSPPDVRPAFRHRFKTILKHPGQKTTKRYGVVEC 421
G+ LV++LI+ A + + PV A + DV P F H ++ + + +R G+V
Sbjct: 585 GALLVDILIKVARMPVTAKDPVTGASVTA-DV-PVFCHSYQLVKR-------QRLGMVRM 635
Query: 422 DPLVLE-------GLDRSAKHMLIPYVPMLVPPKKWKGYNKGGYLFLPSYVMRTHGSRKQ 474
L+++ G + S + ++PML PK W + GGY + VMR S +Q
Sbjct: 636 HDLMIQKVISTDIGAESSEAFVTPQFLPMLAEPKPWVAWKTGGYYVSQASVMRARESSEQ 695
Query: 475 QEALKSVTGNC-MKKVFEALDTLGSTKWRVNKQVLSVLESIWVSGGNIAGLVDRN-DVLI 532
L + + + ++F L+ LGST W VN +V ++ +W +G + N D +
Sbjct: 696 TAYLDTASERGDLDRLFAGLNKLGSTAWTVNSKVFDIMSKVWNTGEAYLDIPAVNTDNSL 755
Query: 533 PEKPLSEDMTEVQKWKWSVRKAKKINQERHSQRCDTELKLSVARRMKDEEGFYYPHNLDF 592
PE P D +W+ + HS RCD+ KL +AR E+ ++PHN+DF
Sbjct: 756 PECPEHNDPVARSEWRKMCTVILNKRKSDHSVRCDSNYKLEIARAHLGEK-LHFPHNVDF 814
Query: 593 RGRAYPMHPHLNHLSSDVCRGVLEFAEGRPLGKSGLRWLKIHLANLFSGGVEKLSHDGRL 652
RGRAYP+ PH NHL SD+ RG+L+F G+ LG+ GLRWLKIH+ANL G K + D R+
Sbjct: 815 RGRAYPLSPHFNHLGSDLSRGLLQFWHGKELGEEGLRWLKIHMANLHGAG--KANFDDRV 872
Query: 653 AFVENHLYEIFDSAENPI-NGSRWWLTAEDPFQCLAACINLSEALKSSSPHSVISHLPIH 711
F E+++ +I + ENP+ + W A+ P+Q LAA L A P +SH+P+
Sbjct: 873 KFTEDNMAKIRAAVENPLAEENSIWREADYPWQFLAASYELVAAYDLPDPSKFVSHIPVQ 932
Query: 712 QDGSCNGLQHYAALGRNTLEAAAVNLVAGEKPADVYSEIAVRVHEIMKRDS-NKDPSKHP 770
QDGSCNGLQHYAALG + A VNL +KP DVY+E+A V E++K D+ N +P
Sbjct: 933 QDGSCNGLQHYAALGGDIDGARQVNLTPFDKPQDVYAEVASIVSELVKEDAENGNP---- 988
Query: 771 QALLAKILIDQVDRKLVKQTVMTSVYGVTFVGAREQIKRRLEEKGHITDDRQLFAAACYA 830
LA L+ +++RK+VK TVMT+VYGVTF+GA+ QI+ +L+E+ D Q+ A Y
Sbjct: 989 ---LADFLVGKINRKIVKPTVMTNVYGVTFIGAKAQIQTQLKEQ--YGDVAQIDEMAHYL 1043
Query: 831 AKVTLTALGEIFEAARSIMGWLGDCAKVIASENQP---------------VRWTTPLGLP 875
A+ +A+ +F A I WL +CA+ I +P V WT+P+GLP
Sbjct: 1044 AQRVFSAMRSLFTNAHDIQDWLTECARNITKTVRPSANLQEIHSGESLSSVIWTSPIGLP 1103
Query: 876 VVQPYCKNERHLIRTSLQVLALQREGNL--VKIRKQRTAFPPNFVHSLDGSHMMMTAVAC 933
VVQPY K + T+LQ + LQ L V+ RKQ AFPPNFVHSLD SHM++TA+
Sbjct: 1104 VVQPYRKAAKRQFDTALQSVFLQDAFTLYGVQSRKQAQAFPPNFVHSLDASHMLLTALNL 1163
Query: 934 RDAGLHFAGL 943
D + FA +
Sbjct: 1164 -DKDVSFASV 1172
>gi|359817571|gb|AEV66615.1| mitochondrial RNA polymerase [Oxytricha trifallax]
gi|403362099|gb|EJY80764.1| DNA-dependent RNA polymerase family protein [Oxytricha trifallax]
Length = 1305
Score = 417 bits (1073), Expect = e-113, Method: Compositional matrix adjust.
Identities = 279/802 (34%), Positives = 440/802 (54%), Gaps = 72/802 (8%)
Query: 178 LRRRQVKQETEAWERMVDEYKELEAKMIEKRLAPNLPHIKGLFLGWFGPLSEAIEREQKM 237
L +RQ+K E ++E ++YK +I+ L L W L +I +QK+
Sbjct: 471 LFQRQLKIEELSFELSQNKYKNQLDSLIKIGRGDQLAVSHRYILSWMRLLETSIAEQQKI 530
Query: 238 ------QRTKKQKAAYAPHIELLPADKVAVI-VMHKMMGL-------------------V 271
K K Y ++ +P++K+A + V+H M L +
Sbjct: 531 FIKRGNLDPKNSKIGY--YLIQMPSEKIASLCVLHLMKHLFKQFIHDIRQFDDEDFTEKI 588
Query: 272 MAGHEDRCVQVVQAAVHIGMAIEQEIRIHSFLEKTKNYKRKKIIADTEEVLSK--EKELL 329
HE + + +Q +G E+E++ ++ + K+ K+ D E++L + E+E+
Sbjct: 589 EQNHEIK-IPAIQLFDELGKLFEKELK-NTLMTGKKSQKKPD---DEEDILQEDMEQEIG 643
Query: 330 RKRVNSLIKSKRVMEAQKLLKNEETKPWGRDTQAKLGSRLVELLIETAYVQHPVNPADY- 388
+R N+L K + L+++ RD Q K+G+ L L+ + +++ + Y
Sbjct: 644 DER-NALNKK---IAKHMLMEDNFIGHLPRDVQLKIGAFLTNLMCKN--LKYKIGNKSYL 697
Query: 389 --SPPDVRPAFRHRFKTILKHPGQKTTKRYGVVECDPLVLEGLDRSAKHMLIPYVPMLVP 446
P ++ + I+ + T + + L L+ L+RS +PM+
Sbjct: 698 LLKPQVLKQQEKKYLGYIIFNRSFIETFVGELDKIHDLSLQ-LERS--------LPMIYQ 748
Query: 447 PKKWKGYNKGGYLFLPSYVMRTHGSRKQQEALKSVTGNCMKKVFEALDTLGSTKWRVNKQ 506
P WK + GGY + + + + K EA K + + + + LD LGS KWR+N++
Sbjct: 749 PAPWKNFTFGGYYLKQTKMAKVIPNFK--EAQKYLQRVDLTNMCQVLDILGSVKWRINRR 806
Query: 507 VLSVLESIWVSGGNIAGLVDR-NDVLI-PEKPLSEDMTEVQKWKWSVRKAKKINQERHSQ 564
+L ++E +W GG + + R ND I PE + E K + K + N+E H+
Sbjct: 807 ILEIIEYVWSIGGGLGEVPKRFNDRQITPEMIKETNFRE----KLKLLKEHQKNRETHAL 862
Query: 565 RCDTELKLSVARRMKDEEGFYYPHNLDFRGRAYPMHPHLNHLSSDVCRGVLEFAEGRPLG 624
RC+ L+LS+A+ K Y+PHN+DFRGR YP+ PHLNH+ +DV RG+L+FAEG+PLG
Sbjct: 863 RCEFLLRLSIAQSFKHVNQIYFPHNMDFRGRVYPIPPHLNHMGADVNRGLLQFAEGQPLG 922
Query: 625 KSGLRWLKIHLANLFSGGVEKLSHDGRLAFVENHLYEIFDSAENPINGSRWWLTAEDPFQ 684
K GL WLK+H++N G +KL R A+ E+ + I A++P N W L +++P+Q
Sbjct: 923 KDGLFWLKVHVSNKI--GKDKLPIVDRAAYAESEMDMIHRCADDPKNNLDW-LQSDNPWQ 979
Query: 685 CLAACINLSEALKSSSPHSVISHLPIHQDGSCNGLQHYAALGRNTLEAAAVNLVAGEKPA 744
L+A I LS+A++ +P IS+ +H DGSCNG+QHYAALGR+ A VNL E+P
Sbjct: 980 TLSAMIELSQAVRCKNPEEYISYQHVHVDGSCNGMQHYAALGRDDRGARQVNLADSERPG 1039
Query: 745 DVYSEIAVRVHEIMKRDSNKDPSKHPQALLAKILIDQVDRKLVKQTVMTSVYGVTFVGAR 804
DVY+ I V E ++ + +D + H +A+ L V+RK +KQTVMTSVYGVTF+GAR
Sbjct: 1040 DVYTAILRLVIEHIENE--QDQALHE---VAEGLKGNVNRKTIKQTVMTSVYGVTFIGAR 1094
Query: 805 EQIKRRLEEKGHITDDRQLFAAACYAAKVTLTALGEIFEAARSIMGWLGDCAKVIASENQ 864
+QI+R+L+++ + +L+ A+ Y AKVT+ +G++F A +I W CAKV+AS N+
Sbjct: 1095 KQIQRQLKDRKLYETNGELYKASQYLAKVTIKCIGDLFRDANNIKEWFSKCAKVVASTNE 1154
Query: 865 PVRWTTPLGLPVVQPY-CKNERHLIRTSLQ--VLALQREGNLVKIRKQRTAFPPNFVHSL 921
PVRW TPLGLP VQPY + + +I+T LQ +A + V +KQ +AFPPNFVHSL
Sbjct: 1155 PVRWITPLGLPCVQPYKSVSNQSVIKTILQQITVADSLDDQPVNKQKQNSAFPPNFVHSL 1214
Query: 922 DGSHMMMTAVACRDAGLHFAGL 943
D +HMM TA+ C+ G+ FA +
Sbjct: 1215 DSTHMMYTALECKRKGIVFAAV 1236
>gi|326678540|ref|XP_685138.4| PREDICTED: DNA-directed RNA polymerase, mitochondrial [Danio rerio]
Length = 1248
Score = 417 bits (1071), Expect = e-113, Method: Compositional matrix adjust.
Identities = 236/613 (38%), Positives = 350/613 (57%), Gaps = 48/613 (7%)
Query: 353 ETKPWGRDTQAKLGSRLVELLIETAYVQHPVNPADYSPPDVRPAFRHRFKTILKHPGQ-K 411
+ PW +LGS LV+L++ +Q + + PA + IL H +
Sbjct: 575 DDTPWPMILMVQLGSFLVDLMVHELKIQSNI---------LNPALEKKLIPILYHMYTFR 625
Query: 412 TTKRYGVVECDPLVLEGLDRSAKHMLI--PYV-PMLVPPKKWKGYNKGGYLFLPSYVMR- 467
+ + G ++ P++ L + + L YV PML PP W G YL P+ +MR
Sbjct: 626 SNHKIGFIKPHPILTRILREATETKLTFDSYVMPMLCPPVPWTSPKSGAYLLTPAKLMRA 685
Query: 468 THGSRKQQEALKSVTGNCMKKVFEALDTLGSTKWRVNKQVLSVLESIWVSGGNIAGLVDR 527
+ G+ + Q L+ + V ++L+ +GS W++NK +L ++ SI+ G+
Sbjct: 686 SDGAMQHQLLLEKTQEEDLHAVLDSLNQVGSCPWKINKPLLDIIISIFNDKGS------- 738
Query: 528 NDVLIPEKPLSE------------DMTEVQK--WKWSVRKAKKINQERHSQRCDTELKLS 573
D L PLSE T+V+K K KAKK+ E HS R D KLS
Sbjct: 739 -DKLSIPPPLSEAPEIPRFNPHDPSYTQVEKAFMKREGIKAKKVVAEMHSLRMDALYKLS 797
Query: 574 VARRMKDEEGFYYPHNLDFRGRAYPMHPHLNHLSSDVCRGVLEFAEGRPLGKSGLRWLKI 633
+A ++D+ F++PHN+DFRGR YP+ P+ NHL SDV R +L FAEGRPLG GL WLKI
Sbjct: 798 IANHVRDK-IFWFPHNMDFRGRTYPLPPYFNHLGSDVTRALLLFAEGRPLGPKGLDWLKI 856
Query: 634 HLANLFSGGVEKLSHDGRLAFVENHLYEIFDSAENPINGSRWWLTAEDPFQCLAACINLS 693
HL NL +G ++ S DGRL + E+ + +I DSA++P++G +WW+ A++P+Q LA C+ ++
Sbjct: 857 HLVNL-TGLKKQSSLDGRLEYAESIMEDILDSADHPLDGRKWWMNADEPWQALACCMEIA 915
Query: 694 EALKSSSPHSVISHLPIHQDGSCNGLQHYAALGRNTLEAAAVNLVAGEKPADVYSEIAVR 753
A +S H IS+ P+HQDGSCNGLQHYAALGR+ + A +VNL+ P DVYS +A +
Sbjct: 916 NASRSPDHHKFISYFPVHQDGSCNGLQHYAALGRDVIGATSVNLMPCALPQDVYSGVAKQ 975
Query: 754 VHEIMKRDSNKDPSKHPQALLAKILIDQVDRKLVKQTVMTSVYGVTFVGAREQIKRRLEE 813
V E RD+ + +A++L + RK+VKQTVMT VYGVT G R QI++RL+E
Sbjct: 976 VEEFRVRDAERGLK------IAQVLQGFISRKVVKQTVMTVVYGVTRYGGRLQIEKRLKE 1029
Query: 814 KGHITDDRQLFAAACYAAKVTLTALGEIFEAARSIMGWLGDCAKVIASENQPVRWTTPLG 873
D ++ A+ Y +L E+F R I WL + A++IA + V W TPLG
Sbjct: 1030 IDDFPKD-YVWDASHYLVVQVFNSLKEMFTGTREIQEWLTESARLIAKSGRTVEWVTPLG 1088
Query: 874 LPVVQPYCKNERHLIRTSLQVLALQREGNLVK---IRKQRTAFPPNFVHSLDGSHMMMTA 930
LP++QPY + +++ ++Q L + + + KQ+ AFPPNF+HSLD +HMM+T+
Sbjct: 1089 LPIIQPYHRIRNQILKGNIQNLNIHISHDANEKPDSMKQKNAFPPNFIHSLDSTHMMLTS 1148
Query: 931 VACRDAGLHFAGL 943
+ C AGL F +
Sbjct: 1149 LHCHRAGLTFVSV 1161
>gi|348679853|gb|EGZ19669.1| hypothetical protein PHYSODRAFT_354222 [Phytophthora sojae]
Length = 576
Score = 416 bits (1070), Expect = e-113, Method: Compositional matrix adjust.
Identities = 221/501 (44%), Positives = 305/501 (60%), Gaps = 45/501 (8%)
Query: 486 MKKVFEALDTLGSTKWRVNKQVLSVLESIWVSGGNIAGLVDRNDVLIPEKPLSEDMTEVQ 545
M + +AL+ + W +NK+VL V+ IW GGN L R DV +P+ E +
Sbjct: 9 MDGILKALNLMAEVPWVINKEVLEVVLKIWEDGGNFGDLPTRTDVPLPDPDSPEFADDPA 68
Query: 546 KWKWSVRKAKKINQERHSQRCDTELKLSVARRMKDEEGFYYPHNLDFRGRAYPMHPHLNH 605
+ +VRK +++N+E HS RCDT KL VA KDE YYP+N+DFRGR YP+ P+LNH
Sbjct: 69 LYHRNVRKIEQLNREFHSLRCDTLYKLQVAEEFKDEPELYYPYNMDFRGRVYPIPPNLNH 128
Query: 606 LSSDVCRGVLEFAEGRPLGKSGLRWLKIHLANLFSGGVEKLSHDGRLAFVENHLYEIFDS 665
L SD+ R +L F + +PLG+ GLRW+KIHLAN+F GV+K S D R+ F + +L ++ S
Sbjct: 129 LGSDLSRSLLIFRDRKPLGERGLRWMKIHLANVF--GVDKCSFDERVEFADANLDKVVAS 186
Query: 666 AENPI--NGSRWWLTAEDPFQCLAACINLSEALKSSSPHSVISHLPIHQDGSCNGLQHYA 723
A NP+ WW A+ PF L C L A++S P +S++PIHQDGSCNGLQHYA
Sbjct: 187 ASNPLGEGDCAWWKGADYPFLALGVCFELRRAIESPDPTKYMSNIPIHQDGSCNGLQHYA 246
Query: 724 ALGRNTLEAAAVNLVAGEKPADVYSEIAVRVHEIMKRDSNKD-PS-KHPQALLAKI---- 777
ALGR+ + VNLV +P+DVY +A V ++ D+ PS + +A+LA +
Sbjct: 247 ALGRDYSGGSQVNLVPAPRPSDVYMGVATEVMAKVENDAALGVPSVEEVRAMLAGVPDDD 306
Query: 778 -------------LIDQ-------------VDRKLVKQTVMTSVYGVTFVGAREQIKRRL 811
L+DQ + RK+VKQTVMTSVYGVT++GAR+QI RL
Sbjct: 307 TAETKARRIKLRTLLDQAQRKKCAQFLNGIITRKVVKQTVMTSVYGVTYIGARKQISARL 366
Query: 812 EE----KGHITDDR---QLFAAACYAAKVTLTALGEIFEAARSIMGWLGDCAKVIASENQ 864
E KGHI D++ +++ A+CY A++T+ ++G++F +AR IM WL CA Q
Sbjct: 367 HETFLTKGHIMDEKLEDEIYHASCYCAELTMGSMGDLFNSARGIMAWLAKCAGKAGLSGQ 426
Query: 865 PVRWTTPLGLPVVQPYCKNERHLIRTSLQ-VLALQREGNLVKIRKQRTAFPPNFVHSLDG 923
P+ W TPLGLPVVQPY +RT +Q VL + +G V I +Q++AFPPNFVHSLD
Sbjct: 427 PMSWITPLGLPVVQPYRSKSTKQVRTKVQHVLMVDNDGQPVSIGRQKSAFPPNFVHSLDS 486
Query: 924 SHMMMTAVAC-RDAGLHFAGL 943
+HMM+TA C D + FA +
Sbjct: 487 THMMLTARRCLEDEKISFAAV 507
>gi|241948027|ref|XP_002416736.1| DNA-directed RNA polymerase, mitochondrial precursor, putative
[Candida dubliniensis CD36]
gi|223640074|emb|CAX44320.1| DNA-directed RNA polymerase, mitochondrial precursor, putative
[Candida dubliniensis CD36]
Length = 1300
Score = 416 bits (1069), Expect = e-113, Method: Compositional matrix adjust.
Identities = 263/726 (36%), Positives = 379/726 (52%), Gaps = 64/726 (8%)
Query: 242 KQKAAYAPHIELLPADKVAVIVMHKMMGLVMAGHEDRCVQVVQAAVHIGMAIEQEIRIHS 301
K +A YAP + L DK ++ + ++ L G + +A +G AIE E RI
Sbjct: 455 KDRAMYAPFLLKLSPDKAIIVTILELFKLHATGGVISGFRAYKAIQSVGKAIEAEYRIGL 514
Query: 302 FLEK-TKNYKRKKIIADTEEVLSKEKELLRKRVNSLIKSKRVMEAQKLLKNEETKPWGRD 360
+K K + RK + ++++ +R M+ NE T W
Sbjct: 515 QAKKENKLFSRKHLSPQLQKLM-----------------RRTMQK----GNESTPEWDDA 553
Query: 361 TQAKLGSRLVELLIETAYVQHPVNPADYSPPDVRPAFRHRFKTILKHPGQKTTKRYGVVE 420
T+A++G LV +L+ A ++ D PAF H + I R GV++
Sbjct: 554 TRARIGGVLVSILMSVAKLKVTRETPQGLIEDSHPAFFHSMQFI-------GGNRVGVIK 606
Query: 421 CDPLVLEGLD-RSAKHMLIPY-VPMLVPPKKWKGYNKGGYLFLPSYVMRTHGSRKQQEAL 478
+ L S + P +PMLV PK W Y GG L+ + ++R S + + +
Sbjct: 607 VHTEISNILSGTSLTESIQPQALPMLVEPKPWNSYYGGGGLYSKTPLVRVRDSPETEAYI 666
Query: 479 KSVT--GNCMKKVFEALDTLGSTKWRVNKQVLSVLESIWVSGGNIAGL--VDRNDVLIPE 534
K+ GN +K VFE L+ LG T W VNK+V +V+ W SG + V L +
Sbjct: 667 KAANERGN-LKAVFEGLNVLGKTAWTVNKKVFNVISHYWNSGEEFLSIPPVSEEPRLPKD 725
Query: 535 KPLSEDMTEVQKWKWSVRKAKKINQERHSQRCDTELKLSVARRMKDEEGFYYPHNLDFRG 594
P + D + + S +A SQRCD +L +AR E+ Y+PHNLDFRG
Sbjct: 726 VPDNSDPEVLLNYTMSKFRALDEYMSNKSQRCDNNYRLEIARAFIGEK-LYFPHNLDFRG 784
Query: 595 RAYPMHPHLNHLSSDVCRGVLEFAEGRPLGKSGLRWLKIHLANLFSGGVEKLSHDGRLAF 654
RAYP+ PH NHL D+ R + F +G+ LG+ GLRWLKI LAN++ GV+K S R+ F
Sbjct: 785 RAYPISPHFNHLGGDLTRSLFLFWDGKELGEEGLRWLKIQLANVY--GVDKESLTKRVEF 842
Query: 655 VENHLYEIFDSAENPINGSRWWLTAEDPFQCLAACINLSEALKSSSPHSVISHLPIHQDG 714
V+ +L ++F SA +P+ + WW AE P+Q L+ C L+EA K P +SHLP+HQDG
Sbjct: 843 VDANLEKVFASAADPLASNAWWQKAEKPWQALSVCFELAEAYKLDDPTKFVSHLPVHQDG 902
Query: 715 SCNGLQHYAALGRNTLEAAAVNLVAGEKPADVYSEIAVRVHEIMKRDSNKDPSKHPQALL 774
+CNGLQHYAALG + A VNL +KP DVYS +A V ++ D+ K
Sbjct: 903 TCNGLQHYAALGGDVEGANQVNLKPADKPQDVYSYVAKLVEARVRADAEKGDE------F 956
Query: 775 AKILIDQVDRKLVKQTVMTSVYGVTFVGAREQIKRRLEEKGHITDDRQLFAAACYAAKVT 834
A L D++ RK+VKQTVMT+VYGVTFVGA EQI++++ D + A Y A+
Sbjct: 957 AIFLQDKIKRKIVKQTVMTNVYGVTFVGAIEQIRKQIAHLYPRDADHNM--PARYLARQV 1014
Query: 835 LTALGEIFEAARSIMGWLGDCAKVIAS------------ENQ---PVRWTTPLGLPVVQP 879
++ E+FE A I WL + AK I E++ V WTT LGLP VQP
Sbjct: 1015 FASIRELFENAHFIQDWLTESAKRITKSVSLDFGESKYLESELLSTVIWTTALGLPCVQP 1074
Query: 880 YCKNERHLIRTSLQVLALQREGNL--VKIRKQRTAFPPNFVHSLDGSHMMMTAVACRDAG 937
Y ++++ ++T++Q + + N V RKQ+ FPPNF+HSLD +HM+MTA C +
Sbjct: 1075 YRQHKKKQLKTAVQDMHIIVPSNTSAVDSRKQQNGFPPNFIHSLDATHMLMTATKCTEND 1134
Query: 938 LHFAGL 943
L FA +
Sbjct: 1135 LQFASV 1140
>gi|410921290|ref|XP_003974116.1| PREDICTED: LOW QUALITY PROTEIN: DNA-directed RNA polymerase,
mitochondrial-like [Takifugu rubripes]
Length = 1102
Score = 416 bits (1069), Expect = e-113, Method: Compositional matrix adjust.
Identities = 232/616 (37%), Positives = 348/616 (56%), Gaps = 49/616 (7%)
Query: 349 LKNEETKPWGRDTQAKLGSRLVELLIETAYVQHPVNPADYSPPDVRPAFRHRFKTILKHP 408
L+ ET+ W +LG+ +V+++++ + + D + P H +
Sbjct: 428 LQGGETQ-WPYIVTLELGTYMVDMMVKNLKINSNILNPDQDRKLI-PVLYHMYTF----- 480
Query: 409 GQKTTKRYGVVECDPLVLEGLDRSAKHMLIPY----VPMLVPPKKWKGYNKGGYLFLPSY 464
++T++ G ++ P +L + + A + + +PML PP W N G YL P+
Sbjct: 481 --RSTRQIGFIKPHP-ILSQMQQDATETKLTFDSYVMPMLCPPMPWSSVNFGAYLLTPTK 537
Query: 465 VMRTHGSRKQQEALKSVTGNCMKKVFEALDTLGSTKWRVNKQVLSVLESIWVSGGNIAGL 524
+MRT Q E L N + V ++L+ LG+ W++NK VL ++ SI+ G+
Sbjct: 538 LMRTVEGAMQHEMLLEKCQN-LHPVLDSLNQLGNCAWKINKPVLDIIISIFNDRGS---- 592
Query: 525 VDRNDVLIPEKPLSE--------------DMTEVQKWKWSVRKAKKINQERHSQRCDTEL 570
+ IP PLSE + +E K V AKK E HS R D
Sbjct: 593 ---EKLDIP-PPLSEAPTIPYFNPNDPNINASEKALLKRQVMSAKKKYGEMHSLRMDALY 648
Query: 571 KLSVARRMKDEEGFYYPHNLDFRGRAYPMHPHLNHLSSDVCRGVLEFAEGRPLGKSGLRW 630
KLS+A ++DE F++PHN+DFRGR YP P+ NHL SDV R L FAEG+PLG GL W
Sbjct: 649 KLSIANHVRDE-IFWFPHNMDFRGRTYPCPPYFNHLGSDVTRATLLFAEGKPLGTKGLDW 707
Query: 631 LKIHLANLFSGGVEKLSHDGRLAFVENHLYEIFDSAENPINGSRWWLTAEDPFQCLAACI 690
LKIHL NL +G ++ S RL + + +IFDSA+NP+ G +WW+ A++P+Q L+ C+
Sbjct: 708 LKIHLVNL-TGLKKRSSLQERLEYANTIMEDIFDSADNPLTGKKWWMNADEPWQTLSCCM 766
Query: 691 NLSEALKSSSPHSVISHLPIHQDGSCNGLQHYAALGRNTLEAAAVNLVAGEKPADVYSEI 750
++ A++S ISH P+HQDGSCNGLQHYAALGR+ + A +VNL+ E P DVYS +
Sbjct: 767 EIANAVRSPDSAQFISHFPVHQDGSCNGLQHYAALGRDVIGATSVNLMPCELPQDVYSSV 826
Query: 751 AVRVHEIMKRDSNKDPSKHPQALLAKILIDQVDRKLVKQTVMTSVYGVTFVGAREQIKRR 810
A +V E+ RD+ +A++L + RK+VKQTVMT VYGVT G R QI++R
Sbjct: 827 AQQVEELRMRDAKSGMK------IAQVLEGFISRKVVKQTVMTVVYGVTRYGGRLQIEKR 880
Query: 811 LEEKGHITDDRQLFAAACYAAKVTLTALGEIFEAARSIMGWLGDCAKVIASENQPVRWTT 870
L+E + ++ A+ Y ++ AL E+F R I WL + A++I+ V W T
Sbjct: 881 LKEIDEFPKE-HVWDASHYLVRLVFNALKEMFTGTREIQDWLTESARLISKSGHTVEWVT 939
Query: 871 PLGLPVVQPYCKNERHLIRTSLQVLALQREGNLVK---IRKQRTAFPPNFVHSLDGSHMM 927
PLGLP++QPY + ++++ LQ ++++ + + KQ+ AFPPNF+HSLD +HMM
Sbjct: 940 PLGLPIIQPYHRTRNQVLKSILQYISVKINHDTNEKPDTVKQKNAFPPNFIHSLDSTHMM 999
Query: 928 MTAVACRDAGLHFAGL 943
MTA+ C AGL + +
Sbjct: 1000 MTALGCYSAGLTYVSV 1015
>gi|359322171|ref|XP_542220.4| PREDICTED: DNA-directed RNA polymerase, mitochondrial [Canis lupus
familiaris]
Length = 1210
Score = 416 bits (1068), Expect = e-113, Method: Compositional matrix adjust.
Identities = 228/605 (37%), Positives = 341/605 (56%), Gaps = 37/605 (6%)
Query: 355 KPWGRDTQAKLGSRLVELLIETAYVQHPVNPADYSPPD----VRPAFRHRFKTILKHPGQ 410
+PW +LG RL ELL+ET + P + P + P H +
Sbjct: 552 QPWPLPVLVELGKRLAELLVETVRI-----PGSLAAPQGACTLIPVLYHVYSF------- 599
Query: 411 KTTKRYGVVECDPLVLEGLDRSAKHMLI---PYVPMLVPPKKWKGYNKGGYLFLPSYVMR 467
++ ++ G+++ P E L +A+H LI VPML PP W + G +L P+ +MR
Sbjct: 600 RSFRQIGILKPHPAFTELLAAAAEHTLIFEAAEVPMLCPPLPWTSPHTGAFLLSPTKLMR 659
Query: 468 T-HGSRKQQEALKSVTGNCMKKVFEALDTLGSTKWRVNKQVLSVLESIWVSGGNIAGLVD 526
+ G+ + Q L S + +AL LG+ WRVN +VL ++ ++ + G V
Sbjct: 660 SLEGTMQHQRLLDSCPPAELHGALDALTQLGNCAWRVNGRVLDLVLELFAAKGCPRLGVP 719
Query: 527 RNDVLIPEKP---LSEDMTEVQKW--KWSVRKAKKINQERHSQRCDTELKLSVARRMKDE 581
P P L D + QK + + + K+ +E HS R D +LS+A+ ++
Sbjct: 720 APPSEAPRPPEGRLPPDASPAQKAEVRRELARCLKVAREMHSLRSDALYRLSLAQHLRHR 779
Query: 582 EGFYYPHNLDFRGRAYPMHPHLNHLSSDVCRGVLEFAEGRPLGKSGLRWLKIHLANLFSG 641
F+ PHN+DFRGR YP PH NHL SD+ R +LEFA+GRPLG GL WLKIHL NL +G
Sbjct: 780 V-FWLPHNMDFRGRTYPCPPHFNHLGSDLARALLEFAQGRPLGPHGLDWLKIHLVNL-TG 837
Query: 642 GVEKLSHDGRLAFVENHLYEIFDSAENPINGSRWWLTAEDPFQCLAACINLSEALKSSSP 701
+ RL F + + +I DSA+ P+ G +WW+ ++P+Q LA C+ ++ A++S P
Sbjct: 838 LKKHEPLQARLVFADEVMDDILDSADRPMTGRKWWMEVDEPWQALACCMEIARAVRSPDP 897
Query: 702 HSVISHLPIHQDGSCNGLQHYAALGRNTLEAAAVNLVAGEKPADVYSEIAVRVHEIMKRD 761
+ +SH P+HQDGSCNGLQHYAALGR+++ AA+VNL+ + P DVYS +A +V ++D
Sbjct: 898 TAFVSHFPVHQDGSCNGLQHYAALGRDSIGAASVNLLPSDFPQDVYSGVAAQVEVFRRQD 957
Query: 762 SNKDPSKHPQALLAKILIDQVDRKLVKQTVMTSVYGVTFVGAREQIKRRLEEKGHITDDR 821
+ + +A++L + RK+VKQTVMT VYGVT G R QI+RRL E + +
Sbjct: 958 AQRG------VRVAQVLEGFISRKVVKQTVMTVVYGVTRYGGRLQIERRLRELSNFPQEF 1011
Query: 822 QLFAAACYAAKVTLTALGEIFEAARSIMGWLGDCAKVIASENQPVRWTTPLGLPVVQPYC 881
++ A+ Y + +L E+F R+I WL + A++IA V W TPLG+P++QPY
Sbjct: 1012 -VWEASHYLVRQVFNSLQEMFSGTRAIQHWLTESARLIAQTGSAVEWVTPLGIPIIQPYH 1070
Query: 882 KNERHLIRTSLQVLALQREGNLVK---IRKQRTAFPPNFVHSLDGSHMMMTAVACRDAGL 938
++ + +I +Q L G+ + KQ+ FPPNF+HSLD SHMM+TA+ C GL
Sbjct: 1071 RDSKVMIGGGIQSLTFSNSGDTTQKPNTLKQKNGFPPNFIHSLDSSHMMLTALHCYRKGL 1130
Query: 939 HFAGL 943
F +
Sbjct: 1131 TFVSV 1135
>gi|348504337|ref|XP_003439718.1| PREDICTED: DNA-directed RNA polymerase, mitochondrial-like
[Oreochromis niloticus]
Length = 1352
Score = 415 bits (1067), Expect = e-113, Method: Compositional matrix adjust.
Identities = 231/616 (37%), Positives = 351/616 (56%), Gaps = 49/616 (7%)
Query: 349 LKNEETKPWGRDTQAKLGSRLVELLIETAYVQHPVNPADYSPPDVRPAFRHRFKTILKHP 408
L+ ET W +LG+ +V+++++ + + + PA+ + IL H
Sbjct: 659 LQGGETS-WPYIVTLELGTYMVDMMVKNLKINSDI---------LNPAYDRKLIPILYHM 708
Query: 409 GQ-KTTKRYGVVECDPLVLEGLDRSAKHMLI--PYV-PMLVPPKKWKGYNKGGYLFLPSY 464
++T++ G ++ P++ + + + L YV PML PP W G YL P+
Sbjct: 709 YTFRSTRQIGFIKPHPILTQMQQEAMETKLTFDSYVMPMLCPPVPWTSVKFGAYLLTPTK 768
Query: 465 VMRTHGSRKQQEALKSVTGNCMKKVFEALDTLGSTKWRVNKQVLSVLESIWVSGGNIAGL 524
+MRT Q E L N + ++++L+ LG+ W++NK +L ++ SI+ G+
Sbjct: 769 LMRTVDGATQHEELLEKCQN-LHAIYDSLNQLGNCAWKINKPLLDIIISIFNDRGS---- 823
Query: 525 VDRNDVLIPEKPLSE--------------DMTEVQKWKWSVRKAKKINQERHSQRCDTEL 570
D+ D+ PLSE +E K V AKK E HS R D
Sbjct: 824 -DKLDI---PPPLSEAPKIPHFNPQDPTYTASEKAHMKRQVINAKKKCSEMHSLRMDALY 879
Query: 571 KLSVARRMKDEEGFYYPHNLDFRGRAYPMHPHLNHLSSDVCRGVLEFAEGRPLGKSGLRW 630
KLS+A M+DE F++PHN+DFRGR YP P+ NHL SDV R +L FAEG+ LG GL W
Sbjct: 880 KLSIANHMRDEI-FWFPHNMDFRGRTYPCPPYFNHLGSDVTRAILMFAEGKLLGPKGLDW 938
Query: 631 LKIHLANLFSGGVEKLSHDGRLAFVENHLYEIFDSAENPINGSRWWLTAEDPFQCLAACI 690
LKIHL NL +G ++ S GRL + + +I DSA+NP+NG +WW+ A++P+Q LA C+
Sbjct: 939 LKIHLVNL-TGLKKRSSLQGRLEYANTIMEDILDSADNPLNGRKWWMNADEPWQALACCM 997
Query: 691 NLSEALKSSSPHSVISHLPIHQDGSCNGLQHYAALGRNTLEAAAVNLVAGEKPADVYSEI 750
++ A++S P IS+ P+HQDGSCNGLQHYAALGR+ + A +VNL+ + P DVYS +
Sbjct: 998 EIANAVRSPDPTQFISYFPVHQDGSCNGLQHYAALGRDVIGATSVNLMPCDVPQDVYSGV 1057
Query: 751 AVRVHEIMKRDSNKDPSKHPQALLAKILIDQVDRKLVKQTVMTSVYGVTFVGAREQIKRR 810
A +V E+ RD+ +A++L + RK+VKQTVMT VYGVT G R QI++R
Sbjct: 1058 AQQVEELRARDAESGLK------IAQVLEGFISRKVVKQTVMTVVYGVTRYGGRLQIEKR 1111
Query: 811 LEEKGHITDDRQLFAAACYAAKVTLTALGEIFEAARSIMGWLGDCAKVIASENQPVRWTT 870
L+E + ++ A+ Y + AL E+F R I WL + A++I+ V W T
Sbjct: 1112 LKEIDEFPKEF-VWDASHYLVRQVFNALKEMFTGTREIQDWLTESARLISKSGHTVEWVT 1170
Query: 871 PLGLPVVQPYCKNERHLIRTSLQVLALQREGNLVK---IRKQRTAFPPNFVHSLDGSHMM 927
PLGLP++QPY + ++++++Q + L+ + + KQ+ AFPPNF+HSLD +HMM
Sbjct: 1171 PLGLPIIQPYHRTRNQVLKSTMQHINLKISHDTKERPDTVKQKNAFPPNFIHSLDSTHMM 1230
Query: 928 MTAVACRDAGLHFAGL 943
+T++ C +GL F +
Sbjct: 1231 LTSLYCYSSGLTFVSV 1246
>gi|223995603|ref|XP_002287475.1| rpot-like RNA polymerase [Thalassiosira pseudonana CCMP1335]
gi|220976591|gb|EED94918.1| rpot-like RNA polymerase [Thalassiosira pseudonana CCMP1335]
Length = 1217
Score = 414 bits (1065), Expect = e-112, Method: Compositional matrix adjust.
Identities = 215/545 (39%), Positives = 331/545 (60%), Gaps = 51/545 (9%)
Query: 442 PMLVPPKKWKGYNKGGYLFLPSYVMRTHGSRKQQEALKSVTGNCMKKVFEALDTLGSTKW 501
PM+VPPK WK + GGY + + MRT + Q++A++ + +VFE L+ LG W
Sbjct: 612 PMVVPPKDWKAVDDGGYETIKTEFMRTRHCKTQKDAIRHAD---LTQVFEGLNVLGRIPW 668
Query: 502 RVNKQVLSVLESIWVSGGNIAGLVDRNDVLIPEKP----------LSEDMTEVQKWKWSV 551
++N+ VL W G + + +++ +P P L +D +VQ + +
Sbjct: 669 KINQNVLDAACKCWDDGIALGDIPSQDNHQVPPLPTPLDYRDFNLLDDDEKKVQVDAFRI 728
Query: 552 RKA--------KKINQERHSQRCDTELKLSVARRMKDEEGFYYPHNLDFRGRAYPMHPHL 603
K K+ N + HS RC LKL+ A++ +D E ++P+N+DFRGRAYP+ PHL
Sbjct: 729 YKDAITKHFRFKQKNMDLHSLRCSAMLKLNQAKKFRDFEEIFFPYNVDFRGRAYPVPPHL 788
Query: 604 NHLSSDVCRGVLEFAEGRPLGKSGLRWLKIHLANLFSGGVEKLSHDGRLAFVENHLYEIF 663
+ + SD+CR +L FA +PLG +GL WLK+HLANL G K+S DGR F ++++ I
Sbjct: 789 SIVGSDLCRALLMFAHPKPLGPNGLYWLKVHLANL--AGANKMSFDGRAQFADDNMESIR 846
Query: 664 DSAENPINGSRWWLTAEDPFQCLAACINLSEALKSSSPHSVISHLPIHQDGSCNGLQHYA 723
+ +NP G+ WW+ +DPFQ LA C + +A+ S P + + LP+H DGSCNGLQHYA
Sbjct: 847 AAVDNPFGGNDWWMGFDDPFQGLATCHEIVKAIDSGDPANYMCSLPVHMDGSCNGLQHYA 906
Query: 724 ALGRNTLEAAAVNLVAGEKPADVYSEIAVRVHEIMKR------------DSNKDPSKHPQ 771
ALGR+ + AVNL ++P DVY I V +HE+++R ++ D +K +
Sbjct: 907 ALGRDKVGGKAVNLCIADEPQDVY--IGV-MHEVIRRVAEDAQEMLPFDETKADLTKAEK 963
Query: 772 ALLAKI----LIDQ-VDRKLVKQTVMTSVYGVTFVGAR----EQIKRRLEEKGHITD--D 820
L+ KI L++ +DR +VK+TVMTSVYGVT++GAR E+I+ +LE+KG+ D +
Sbjct: 964 ELMKKIKSARLVNGLIDRGVVKRTVMTSVYGVTYIGARNQISEKIEEKLEDKGYDIDEME 1023
Query: 821 RQLFAAACYAAKVTLTALGEIFEAARSIMGWLGDCAKVIASENQPVRWTTPLGLPVVQPY 880
++ A Y A +T+ +G++F AR M WL CA++IA + QPV + +P+G+PVVQPY
Sbjct: 1024 AEINMACGYLASLTMEVMGQLFTGARQTMNWLTACARLIAQQGQPVAFVSPVGVPVVQPY 1083
Query: 881 CKNERHLIRTSLQVLALQREGNLVKIRKQR--TAFPPNFVHSLDGSHMMMTAVACRDAGL 938
+ + T LQ + L + +++ + +QR +AFPPN+VHSLD SHM++TA+ + GL
Sbjct: 1084 RQKRPFTVVTLLQNVVLSNDSDVLPLHRQRQVSAFPPNYVHSLDSSHMLLTAIEMQKRGL 1143
Query: 939 HFAGL 943
HF+ +
Sbjct: 1144 HFSAV 1148
>gi|189206131|ref|XP_001939400.1| DNA-directed RNA polymerase, mitochondrial precursor [Pyrenophora
tritici-repentis Pt-1C-BFP]
gi|187975493|gb|EDU42119.1| DNA-directed RNA polymerase, mitochondrial precursor [Pyrenophora
tritici-repentis Pt-1C-BFP]
Length = 1430
Score = 413 bits (1062), Expect = e-112, Method: Compositional matrix adjust.
Identities = 281/846 (33%), Positives = 411/846 (48%), Gaps = 109/846 (12%)
Query: 181 RQVKQETEAWERMVDEYKELEAKMIEKRL--APNLPHIKGLFLGWFGPLSEAIER----- 233
RQ++ E + + V+ +K K+ + + N I+ + W+ L A ++
Sbjct: 368 RQLQMEQDGVDAAVNRWKHENEKLADIGIHGVMNTKPIQAMMYSWYKALVPAFKKRIEHA 427
Query: 234 -----EQKMQRTKKQKAAYAPHIELLPADKVAVIVMHKMMGLVM--AGHEDRCVQVVQAA 286
E K++ +Y +E +K+A I + + + G ++ ++V +
Sbjct: 428 KQVLSESSKDMMKEEVNSYGVWLERCKPEKLAAITVARTTQAAVRNKGEDNSALKVSALS 487
Query: 287 VHIGMAI------EQEIRIHSFLEKTKNYKRKKIIADTEEVLSKEKELLRKRVNSLIKSK 340
IG I E + R +FL+K +RK+ D LSK +L+
Sbjct: 488 TSIGSEIQDYLDSESQARRDAFLKK----QRKQTRLDLFNKLSKNPPVLQTEPGQ----- 538
Query: 341 RVMEAQKLLKNEETKPWGRDTQAKLGSRLVELLIETAYVQHPVNPADYSPPDVR--PAFR 398
E+ L + E + KLG+ +E L+ A + R AF
Sbjct: 539 --RESVASLDSFEKTTIPLVARTKLGAMCLENLLSCATLTVTAKDPRTGEEKSRSMAAFH 596
Query: 399 HRFKTILKHPGQKTTKRYGVVECDPLVLEGLDRSAKHMLIPY-VPMLVPPKKWKGYNKGG 457
H+ G K+ G + VL L + H + +PM++ PK W + GG
Sbjct: 597 HQV-------GFHQGKKLGFIVPHHEVLTKLRTESVHSIHNVRLPMVIEPKPWSSFEDGG 649
Query: 458 YLFLPSYVMRTHGSRKQQEAL--KSVTGNCMKKVFEALDTLGSTKWRVNKQVLSVLESIW 515
Y LP V+R G Q A ++ M KV LD LG W++N V V+ W
Sbjct: 650 YYTLPQKVVRQKGGDSSQRAYAQSAIENGDMSKVMAGLDVLGRVPWQINAPVFDVMARAW 709
Query: 516 VSGGNIAGLVDRNDVLIPEKPLS--EDMTEVQKWKWSVRKAKKINQ--ERHSQRCDTELK 571
+G ++ L+ V E+P D T ++ KW + NQ HSQRC +
Sbjct: 710 NAGESLGSLIGEKAVAALERPKEPPADATYQERAKWGKALKEYDNQIGGLHSQRCFQNFQ 769
Query: 572 LSVARRMKDEEGFYYPHNLDFRGRAYPMHPHLNHLSSDVCRGVLEFAEGRPLGKSGLRWL 631
L AR +E+ Y+PH++DFRGRAYP+ P LNH+ SDV RG+L+FA G+ LG GL+WL
Sbjct: 770 LETARAFLNEKKIYFPHSVDFRGRAYPIPPILNHIGSDVARGLLKFAHGKELGTVGLQWL 829
Query: 632 KIHLANLFSGGVEKLSHDGRLAFVENHLYEIFDSAENPINGSRWWLTAEDPFQCLAACIN 691
KIHLANL+ G +K S R F ++L EI DSA NP++G RWW AEDP+QCLA CI
Sbjct: 830 KIHLANLY--GFDKASLREREQFAMDNLDEIRDSASNPLDGRRWWAKAEDPWQCLACCIE 887
Query: 692 LSEALKSSSPHSVISHLPIHQDGSCNGLQHYAALGRNTLEAAAVNLVAGEKPADVYSEIA 751
L AL S P IS LP+HQDG+CNGLQHYAALG + A VNL ++P D+Y+ +A
Sbjct: 888 LKNALDSPDPARFISQLPVHQDGTCNGLQHYAALGGDHAGARQVNLEPSDRPQDIYTGVA 947
Query: 752 VRVHEIMKRDSNKDPSKHPQALLAKILIDQVDRKLVKQTVMTSVYGVTFVGAREQIK--- 808
V E++ +D+ K LAK + + RK+VK+TVMT+VYGVTF+GA+EQ+
Sbjct: 948 ELVKEMVTKDAAKGSE------LAKFVEGHISRKVVKRTVMTNVYGVTFMGAKEQVHDEL 1001
Query: 809 RRLEEKGHITDD-RQLFAAACYAAKVTLTALGEIFEAARSIMGWLGDCAKVIAS------ 861
R + K T+ + L + A Y A ALG+IF A+ I WLG+C + I +
Sbjct: 1002 RNIFPKFEPTEKVKSLGSVALYIAYAIFEALGKIFNGAQEIQYWLGECGERITTSLTKEQ 1061
Query: 862 ----------------------------------------EN--QPVRWTTPLGLPVVQP 879
EN + WTTPL +P+VQP
Sbjct: 1062 IRRIHNRYEGIDLAKEAYDSKFTPPKKLTSAQLAKFNKSMENFTTGIIWTTPLRMPIVQP 1121
Query: 880 YCKNERHLIRTSLQVLALQREG--NLVKIRKQRTAFPPNFVHSLDGSHMMMTAVACRDAG 937
Y K+ IRT +Q + + ++ + V RKQ AFPPNF+HSLD SHM+++A+ + G
Sbjct: 1122 YRKDSVQKIRTKIQDITVSKKSAKDEVDKRKQLQAFPPNFIHSLDASHMLLSALKASEMG 1181
Query: 938 LHFAGL 943
L FA +
Sbjct: 1182 LDFAAV 1187
>gi|301620987|ref|XP_002939816.1| PREDICTED: DNA-directed RNA polymerase, mitochondrial-like [Xenopus
(Silurana) tropicalis]
Length = 1242
Score = 412 bits (1060), Expect = e-112, Method: Compositional matrix adjust.
Identities = 248/715 (34%), Positives = 395/715 (55%), Gaps = 51/715 (7%)
Query: 249 PHIELLPADKVAVIVMHKMMGLVMAGHEDRCVQVVQAAVHIGMAIEQEIRIHSFLEKTKN 308
P++ LL D+ I++ + + G + + +G I IH L+++
Sbjct: 472 PYLCLLGEDQYVDIMLQSLASIPPTGES-----FLVMSRDMGTKINNRYSIHKKLQESHI 526
Query: 309 YKRKKIIADTEEVLSKEKE---LLRKRVNSLIKSKRVMEAQKLLKNEETKPWGRDTQAKL 365
+ + + D ++L+K + LL + + ++ K+ A L N +T W +L
Sbjct: 527 NRIQDLYRDYCQLLAKNGKVSGLLPREMWEQLEQKKYGGAS--LMNLDTI-WPNSLLVQL 583
Query: 366 GSRLVELLIETAYVQHPVNPADYSPPDVRPAFRHRFKTILKHPGQKTTKRYGVVECDPLV 425
G+ LV+L+++ V + + + P + P H + ++TK+ G+++ P+
Sbjct: 584 GTHLVDLMVQEIKVPNDL-LSSRDDPKLIPVLYHMYSF-------RSTKQIGLIKPHPIF 635
Query: 426 LEGLDRSAKHMLI---PYVPMLVPPKKWKGYNKGGYLFLPSYVMRT-HGSRKQQEALKSV 481
+ + + L +PML PP W G YL P+ +MR G+ + Q L+
Sbjct: 636 SQIQSDAGESCLTFESSVMPMLCPPVPWLSPRFGAYLLSPAKLMRCMEGAVQHQLLLEKS 695
Query: 482 TGNCMKKVFEALDTLGSTKWRVNKQVLSVLESIWVSGGNIAGLVDRNDV--------LIP 533
+ V ++L+ LG WR+N+ +L ++ SI+ GN ++ D+ +P
Sbjct: 696 PPGQLYPVLDSLNQLGMCAWRINQPILDIIVSIFNEKGN-----EKLDIPPPLSEAPKLP 750
Query: 534 EKPLSEDMTEVQKW--KWSVRKAKKINQERHSQRCDTELKLSVARRMKDEEGFYYPHNLD 591
E+P D+ K + + + +K + E HS R D KLS+A ++D+ F++PHN+D
Sbjct: 751 EQPHG-DLNSRDKMMHQRELARCRKKSSEMHSLRMDALYKLSIASHLRDK-IFWFPHNMD 808
Query: 592 FRGRAYPMHPHLNHLSSDVCRGVLEFAEGRPLGKSGLRWLKIHLANLFSGGVEKLSHDGR 651
FRGR YP P+ NHL SDV R +L FAEGRPLG GL WLK HL NL +G ++ S R
Sbjct: 809 FRGRTYPCPPYFNHLGSDVTRALLLFAEGRPLGPKGLEWLKTHLINL-TGLKKRNSLQER 867
Query: 652 LAFVENHLYEIFDSAENPINGSRWWLTAEDPFQCLAACINLSEALKSSSPHSVISHLPIH 711
+ ++ + +I DSA+NP+ G RWW+ A++P+Q LA C+ ++ A +S P ISH P+H
Sbjct: 868 KEYADSVMDDILDSADNPLKGKRWWMEADEPWQALACCMEIANASRSPDPTKYISHFPVH 927
Query: 712 QDGSCNGLQHYAALGRNTLEAAAVNLVAGEKPADVYSEIAVRVHEIMKRDSNKDPSKHPQ 771
QDGSCNGLQHYAALGR+ + A +VNL+ + P DVYS +A +V E KRD+ +
Sbjct: 928 QDGSCNGLQHYAALGRDEIGAKSVNLMPCDIPQDVYSGVAQQVEEFRKRDAQRG------ 981
Query: 772 ALLAKILIDQVDRKLVKQTVMTSVYGVTFVGAREQIKRRLEEKGHITDDRQLFAAACYAA 831
+A+IL + RK+VKQTVMT VYGVT G R QI++RL E + + ++ A+ Y
Sbjct: 982 VKIAQILDGFIGRKVVKQTVMTVVYGVTRYGGRLQIEKRLRELDNFPKEY-VWEASHYLV 1040
Query: 832 KVTLTALGEIFEAARSIMGWLGDCAKVIASENQPVRWTTPLGLPVVQPYCKNERHLIRTS 891
+ ++L E+F R I WL + A++I+ V W TPLGLP++QPY + + L +++
Sbjct: 1041 QQVFSSLKEMFSGTREIQLWLTESARMISKSGNTVEWQTPLGLPIIQPYHRTKPVLFQSN 1100
Query: 892 LQVLALQREGNLVK---IRKQRTAFPPNFVHSLDGSHMMMTAVACRDAGLHFAGL 943
LQV+ LQ ++ + KQ+ AFPPNF+HSLD +HMM+TA+ C GL F +
Sbjct: 1101 LQVVNLQSSHDVNERPDTMKQKNAFPPNFIHSLDSTHMMLTALHCYSHGLTFVSV 1155
>gi|260830109|ref|XP_002610004.1| hypothetical protein BRAFLDRAFT_287284 [Branchiostoma floridae]
gi|229295366|gb|EEN66014.1| hypothetical protein BRAFLDRAFT_287284 [Branchiostoma floridae]
Length = 804
Score = 412 bits (1058), Expect = e-112, Method: Compositional matrix adjust.
Identities = 227/608 (37%), Positives = 351/608 (57%), Gaps = 46/608 (7%)
Query: 357 WGRDTQAKLGSRLVELLIETAYVQHPVNPADYSPPDVRPAFRHRFKTILKHPGQKTTKRY 416
W + LGS LV+ ++ + + + S + PA H + + K+
Sbjct: 134 WPINLIINLGSLLVDAMVREVKIDNNLF-RKTSEQKLIPALYHMYTY-------RNIKQV 185
Query: 417 GVVECDPLVLEGLDRSAKHMLI---PYVPMLVPPKKWKGYNKGGYLFLPSYVMRTHGSRK 473
G+++ P++++ ++ + L+ +PML+PP W KGG+L P+ +MR++ +
Sbjct: 186 GIIKPHPMLVQLVEGAQDTSLVFDSSLLPMLMPPVPWSSVKKGGFLLSPTKLMRSNDATL 245
Query: 474 QQEALKSVTGNC-MKKVFEALDTLGSTKWRVNKQVLSVLESIWVSGGNIAGLVDRNDVLI 532
Q E L G + + ++L+ LG+ W++N+ +L ++ ++ + G+ ++ I
Sbjct: 246 QHELLLEKVGTSELYPILDSLNQLGACAWKINQPILDLVIRVFNNKGS-------KELDI 298
Query: 533 PEKPLSEDMT------------EVQKWKWSVRKAKKINQERHSQRCDTELKLSVARRMKD 580
P+ P+SE T + Q + + + +K+ E HS R D KLS+A R +
Sbjct: 299 PQ-PVSEAPTFPKLGTEILTNGDKQAMRKQMAQVRKLRSEMHSLRMDMLYKLSIANRFR- 356
Query: 581 EEGFYYPHNLDFRGRAYPMHPHLNHLSSDVCRGVLEFAEGRPLGKSGLRWLKIHLANLFS 640
E FY+PHN+DFRGR YP PH NHL SDV R +L FAEGRPLG+ GL WLKIHL NL +
Sbjct: 357 HEIFYFPHNMDFRGRVYPCPPHFNHLGSDVARSILVFAEGRPLGEKGLEWLKIHLVNL-T 415
Query: 641 GGVEKLSHDGRLAFVENHLYEIFDSAENPINGSRWWLTAEDPFQCLAACINLSEALKSSS 700
G +K S RL + + EIFDSA++P+ G +WW+TA++P+Q LA C+ ++ A++S
Sbjct: 416 GFKKKNSQMERLEYANEMMEEIFDSADDPMTGHKWWMTADEPWQALACCMEIANAVRSPD 475
Query: 701 PHSVISHLPIHQDGSCNGLQHYAALGRNTLEAAAVNLVAGEKPADVYSEIAVRVHEIMKR 760
P + +SH P+HQDGSCNGLQHYAALGR+ A VNL+ E P DVYS +A +V ++ +
Sbjct: 476 PQAYVSHFPVHQDGSCNGLQHYAALGRDITGAHQVNLMPAESPQDVYSGVARQVEKLRAK 535
Query: 761 DSNKDPSKHPQALLAKILIDQVDRKLVKQTVMTSVYGVTFVGAREQIKRRLEEKGHITDD 820
D+ + +A++L + RK+VKQTVMT VYGVT G R QI+R+L++ D
Sbjct: 536 DAEEG------VKVAQVLDGFIKRKVVKQTVMTVVYGVTRYGGRLQIQRQLKDIPDFPQD 589
Query: 821 RQLFAAACYAAKVTLTALGEIFEAARSIMGWLGDCAKVIASENQPVRWTTPLGLPVVQPY 880
++ A+ Y K +L EIF AR I WL + A++I+ V+W TPLGLPVVQPY
Sbjct: 590 -HVWEASGYLVKKVFMSLREIFTLAREIQDWLTESARLISHVGSAVQWVTPLGLPVVQPY 648
Query: 881 CKNERHLIRTSLQVLALQREGNLVK-----IRKQRTAFPPNFVHSLDGSHMMMTAVACRD 935
K + L+ + + + I KQ+ AFPPNF+HSLD +HMM+T++ C+
Sbjct: 649 HKVKNKLLYHYWICIHGSYHLHFSESWRPDIIKQKNAFPPNFIHSLDSTHMMLTSLHCQQ 708
Query: 936 AGLHFAGL 943
AG+ + +
Sbjct: 709 AGIQYVSV 716
>gi|148235669|ref|NP_001080987.1| polymerase (RNA) mitochondrial (DNA directed) [Xenopus laevis]
gi|6625742|gb|AAF19376.1|AF200705_1 RNA polymerase [Xenopus laevis]
gi|213626594|gb|AAI69686.1| Polymerase (RNA) mitochondrial (DNA directed) [Xenopus laevis]
Length = 1235
Score = 411 bits (1057), Expect = e-112, Method: Compositional matrix adjust.
Identities = 252/721 (34%), Positives = 395/721 (54%), Gaps = 63/721 (8%)
Query: 249 PHIELLPADKVAVIVMHKMMGLVMAGHEDRCVQVVQAAVHIGMAIEQEIRIHSFLEKTKN 308
P++ LL D+ I++ + + G + + +G I IH L+
Sbjct: 465 PYLCLLEEDQYVDIMLQSLTNIPPTGES-----FLVMSRDMGTKINNRYSIHKKLKAYNL 519
Query: 309 YKRKKIIADTEEVLSKEKELLRKRVNSLIKSK--RVMEAQKL----LKNEETKPWGRDTQ 362
K K + D ++L+K +V+ L+ + +E +K L N +T W
Sbjct: 520 NKIKVLYRDYCQLLAKNG-----KVSGLLPREMWEQLEQEKYGGPSLMNVDTI-WPNTLL 573
Query: 363 AKLGSRLVELLIETAYVQHPVNPADYSPPDVRPAFRHRFKTILKHPGQKTTKRYGVVECD 422
+LG+ LV+L+++ V + + + P + P H + ++TK+ G+++
Sbjct: 574 VQLGTHLVDLMVQEIKVPNDLL-SSRDDPKLIPVLYHMYSF-------RSTKQIGLIKPH 625
Query: 423 PLVLEGLDRSAKHMLIPY----VPMLVPPKKWKGYNKGGYLFLPSYVMRT-HGSRKQQEA 477
P + + A+ + + +PML PP W G YL P+ +MR G+ + Q
Sbjct: 626 P-IFSQIQLDARESCLTFESSVMPMLCPPVPWMSPRFGAYLLSPAKLMRCMEGAVQHQLL 684
Query: 478 LKSVTGNCMKKVFEALDTLGSTKWRVNKQVLSVLESIWVSGGNIAGLVDRNDV------- 530
L+ + V ++L+ LG WR+N+ +L ++ SI+ GN ++ D+
Sbjct: 685 LEKSPPGQLYPVLDSLNQLGMCAWRINQTILDIIVSIFNLKGN-----EKLDIPPPISEA 739
Query: 531 -LIPEKPL----SEDMTEVQKWKWSVRKAKKINQERHSQRCDTELKLSVARRMKDEEGFY 585
+PE+P S+D Q+ + + +K + E HS R D KLS+A ++D+ F+
Sbjct: 740 PKMPEQPHGDVNSKDKLMHQR---ELARCRKKSSEMHSLRMDALYKLSIASHLRDK-IFW 795
Query: 586 YPHNLDFRGRAYPMHPHLNHLSSDVCRGVLEFAEGRPLGKSGLRWLKIHLANLFSGGVEK 645
+PHN+DFRGR YP P+ NHL SDV R +L FAEGRPLG GL WLKIHL NL +G ++
Sbjct: 796 FPHNMDFRGRTYPCPPYFNHLGSDVTRALLLFAEGRPLGPKGLEWLKIHLINL-TGLKKR 854
Query: 646 LSHDGRLAFVENHLYEIFDSAENPINGSRWWLTAEDPFQCLAACINLSEALKSSSPHSVI 705
S R + + + +I DSA+NP+ G RWW+ A++P+Q LA C+ +++A +S P I
Sbjct: 855 NSLKERKEYADAIMDDILDSADNPLKGKRWWMEADEPWQALACCMEIAKASRSPDPTKYI 914
Query: 706 SHLPIHQDGSCNGLQHYAALGRNTLEAAAVNLVAGEKPADVYSEIAVRVHEIMKRDSNKD 765
SH P+HQDGSCNGLQHYAALGR+ + A +VNL+ + P DVYS +A +V E KRD+ +
Sbjct: 915 SHFPVHQDGSCNGLQHYAALGRDEIGAKSVNLMPCDTPQDVYSGVAQQVEEFCKRDAQRG 974
Query: 766 PSKHPQALLAKILIDQVDRKLVKQTVMTSVYGVTFVGAREQIKRRLEEKGHITDDRQLFA 825
+A+IL + RK+VKQTVMT VYGVT G R QI++RL E + + ++
Sbjct: 975 ------VKIAQILDGFIGRKVVKQTVMTVVYGVTRYGGRLQIEKRLREMDNFPKE-YVWE 1027
Query: 826 AACYAAKVTLTALGEIFEAARSIMGWLGDCAKVIASENQPVRWTTPLGLPVVQPYCKNER 885
A+ Y + ++L E+F R I WL + A++I+ V W TPLGLP++QPY + +
Sbjct: 1028 ASHYLVQQVFSSLKEMFSGTREIQLWLTESARMISKSGNTVEWQTPLGLPIIQPYHRAKP 1087
Query: 886 HLIRTSLQVLALQREGNLVK---IRKQRTAFPPNFVHSLDGSHMMMTAVACRDAGLHFAG 942
L ++LQV+ LQ ++ + KQ+ AFPPNF+HSLD +HMM+TA+ C GL F
Sbjct: 1088 VLFHSNLQVVNLQSSHDVNERPDTMKQKNAFPPNFIHSLDSTHMMLTALHCYSHGLTFVS 1147
Query: 943 L 943
+
Sbjct: 1148 V 1148
>gi|402903464|ref|XP_003914585.1| PREDICTED: DNA-directed RNA polymerase, mitochondrial [Papio anubis]
Length = 1226
Score = 411 bits (1057), Expect = e-112, Method: Compositional matrix adjust.
Identities = 246/717 (34%), Positives = 388/717 (54%), Gaps = 44/717 (6%)
Query: 242 KQKAAYAPHIELLPADKVAVIVMHKMMGLVMAGHEDRCVQVVQAAVHIGMAIEQEIRIHS 301
K + + P + LL +V I++ + L G + +A + Q R+
Sbjct: 455 KGRFSLYPFLCLLDEREVVRILLQVLQALPAQGESFTTLARELSARTFSRHVVQRRRLSG 514
Query: 302 FLEKTKNYKRKKIIADTEEVLSKEKELLRKRVNSLIKSKRVMEAQKLLKNEETKPWGRDT 361
++ + Y RK + VL+ + +V + ++ EA + +PW
Sbjct: 515 QVQALETYYRKYL-----HVLASDT-----KVPNPCLPRQYWEALGAPEALREQPWPLPV 564
Query: 362 QAKLGSRLVELLIETAYVQHPVNPADYSPPDVRPAFRHRFKTILKHPGQKTTKRYGVVEC 421
Q +LG +L E+L++ + ++ + + + P H + + ++ G+++
Sbjct: 565 QMELGKQLAEMLVQATRMPSSLD-SQHGSSRLVPVLYHVYSF-------RNVQQIGILKP 616
Query: 422 DPLVLEGLDRSAKHMLI---PYVPMLVPPKKWKGYNKGGYLFLPSYVMRT-HGSRKQQEA 477
P ++ L+ +A+ L VPML PP W + G +L P+ +MRT G+ + QE
Sbjct: 617 HPAYVQLLETAAEPTLTFEAVDVPMLCPPLPWTSPHTGAFLLSPTKLMRTVEGATQHQEL 676
Query: 478 LKSVTGNCMKKVFEALDTLGSTKWRVNKQVLSVLESIWVSGGNIAGLVDRNDVLIPEK-- 535
L++ + +AL LG+ WRVN +VL ++ ++ + G V P+
Sbjct: 677 LETCPPAALHGALDALTQLGNCAWRVNGRVLDLVLQLFQAKGCPKLGVPAPASEAPQPAE 736
Query: 536 ---PLSEDMTEVQKWKWSVRKAKKINQERHSQRCDTELKLSVARRMKDEEGFYYPHNLDF 592
P S + + + + +K+ +E HS R + +LS+A+ ++ F+ PHN+DF
Sbjct: 737 AHLPQSAAPARKAELRRELARCQKMAREMHSLRAEARYRLSLAQHLRGRV-FWLPHNMDF 795
Query: 593 RGRAYPMHPHLNHLSSDVCRGVLEFAEGRPLGKSGLRWLKIHLANLFSGGVEKLSHDGRL 652
RGR YP PH NHL SDV R +LEFA+GRPLG GL WLKIHL NL +G ++ RL
Sbjct: 796 RGRTYPCPPHFNHLGSDVARALLEFAQGRPLGPHGLNWLKIHLVNL-TGSKKREPLRKRL 854
Query: 653 AFVENHLYEIFDSAENPINGSRWWLTAEDPFQCLAACINLSEALKSSSPHSVISHLPIHQ 712
AF E + +I DSA+ P+ G +WW+ AE+P+Q LA C+ ++ A++SS P + +SHLP+HQ
Sbjct: 855 AFAEEVMDDILDSADQPMTGRKWWMGAEEPWQTLACCMEVANAVRSSDPAAYVSHLPVHQ 914
Query: 713 DGSCNGLQHYAALGRNTLEAAAVNLVAGEKPADVYSEIAVRVHEIMKRDSNKDPSKHPQA 772
DGSCNGLQHYAALGR+++ AA+VNL + P DVYS +A +V ++D+ +
Sbjct: 915 DGSCNGLQHYAALGRDSVGAASVNLEPSDVPQDVYSGVAAQVEVFRRQDAERGTQ----- 969
Query: 773 LLAKILIDQVDRKLVKQTVMTSVYGVTFVGAREQIKRRLEEKGHITDDRQLFA--AACYA 830
+A++L + RK+VKQTVMT VYGVT G R QI++RL E +TD Q F A+ Y
Sbjct: 970 -VAQMLEGFITRKVVKQTVMTVVYGVTHYGGRLQIEKRLRE---LTDFPQEFVWEASHYL 1025
Query: 831 AKVTLTALGEIFEAARSIMGWLGDCAKVIASENQPVRWTTPLGLPVVQPYCKNER-HLIR 889
+ L E+F R+I WL + A++I+ V W TPLG+P++QPY + + +R
Sbjct: 1026 VRQVFKTLQEMFAGTRAIQHWLTESARLISHMGSVVEWVTPLGIPIIQPYRQEVKVKQVR 1085
Query: 890 TSLQVLALQREGNLVK---IRKQRTAFPPNFVHSLDGSHMMMTAVACRDAGLHFAGL 943
+Q + G+L + RKQ+ FPPNF+HSLD SHMM+TA+ C GL F +
Sbjct: 1086 GGIQSITYTHSGDLSQKPNTRKQKNGFPPNFIHSLDSSHMMLTALHCYRKGLTFVSV 1142
>gi|326437615|gb|EGD83185.1| single-subunit RNA polymerase [Salpingoeca sp. ATCC 50818]
Length = 1301
Score = 410 bits (1055), Expect = e-111, Method: Compositional matrix adjust.
Identities = 254/682 (37%), Positives = 376/682 (55%), Gaps = 57/682 (8%)
Query: 301 SFLEKTKNYKRKKIIADTEEVLSKEKELLRKRVNSLIKSKRVMEAQKLLKNEET--KPWG 358
S LE+T + +I++D E++ +K K L+K + E+ + NE++ W
Sbjct: 556 SDLERTVYARYHQIMSDREQM---KKHSPSKLWRQLMKEYSI-ESGVSVPNEDSGLAFWT 611
Query: 359 RDTQAKLGSRLVELLIETAYVQHPVNPADYSPPDVRPAFRHRFKTILKHPGQKTTKRYGV 418
+G +++L++ A + A+ PAF H ++ + TKR+G
Sbjct: 612 PRMLGAVGGEMIDLVLRKATLSAITGRAEDKE---LPAFYHTYEF-------EGTKRFGF 661
Query: 419 VECDPLVLE------------GLDRSAKHMLIPYVPMLVPPKKWKGYNKGGYLFLPSYVM 466
+ V + G + + + +PMLV PK W G G L P +M
Sbjct: 662 IRTHDTVQDYSYNFVATNAQLGKNVFRRSIDAVNLPMLVLPKPWTGVRTGASLVSPVTIM 721
Query: 467 RTHGSRKQQEALKSVTGNCMKKVFEALDTLGSTKWRVNKQVLSVLESIWVSGGNIAGLVD 526
RT S AL + T + + +F+AL L S WRVN +V V+ + + + + L
Sbjct: 722 RTFDSHFHHYALLAETTHLLDDMFDALTYLSSMAWRVNTKVFDVVRAAFEAEVGVEELAI 781
Query: 527 RNDVL----IPEKPLSEDMTEVQKWKWSVRKAKKINQERHSQRCDTELKLSVARRMKDEE 582
++ +P + + K++ V + +K + E +SQR LKL VA+ ++D++
Sbjct: 782 APHIIQPPPVPARTADMSAEDKAKYQRQVMEHRKQSSEAYSQRTTLHLKLMVAQALRDQD 841
Query: 583 GFYYPHNLDFRGRAYPMHPHLNHLSSDVCRGVLEFAEGRPLGKSGLRWLKIHLANLFSGG 642
FY PHNLDFRGRAY + P+L H+ D+ RG+L FAE +PLGK+GLRWLKIHLAN++ G
Sbjct: 842 -FYLPHNLDFRGRAYTIAPYLTHIGDDLSRGLLVFAEKKPLGKNGLRWLKIHLANVY--G 898
Query: 643 VEKLSHDGRLAFVENHLYEIFDSAENPI----NGS-RWWLTAEDPFQCLAACINLSEALK 697
+K S D R F E++++ + ++ NP+ +G WWL ++P+Q LA C L +A+
Sbjct: 899 NDKCSLDDREKFAEDNMHHVEETVRNPLRFLEDGEPMWWLQGDNPWQVLAVCNELHDAMC 958
Query: 698 SSSPHSVISHLPIHQDGSCNGLQHYAALGRNTLEAAAVNLV---AGEKPADVYSEIAVRV 754
+ +P S P+HQDG+CNGLQHYAALGR+ A VNLV ++P DVYS +A +
Sbjct: 959 APNPEEFESGFPVHQDGTCNGLQHYAALGRDVEGARHVNLVRVPEDDRPQDVYSAVARTI 1018
Query: 755 HEIMKRDSNKD-------PSKHPQAL-LAKILIDQ--VDRKLVKQTVMTSVYGVTFVGAR 804
++R + D P H A LA +L+ Q + RK+VKQTVMT+VYGVTFVG R
Sbjct: 1019 DTHLQRHAQGDFSSTSKLPVSHEVAQELASLLVAQGPMKRKIVKQTVMTNVYGVTFVGGR 1078
Query: 805 EQIKRRLEEKGHITDDRQLFAAACYAAKVTLTALGEIFEAARSIMGWLGDCAKVIASENQ 864
EQI R+L + + +++A A Y + +LGEIFE A+ I WL AK IA+ +
Sbjct: 1079 EQIGRQL-KAAKVVPPEKVYATASYLTALVFLSLGEIFEKAQLIQQWLSQQAKKIAASGE 1137
Query: 865 PVRWTTPLGLPVVQPYCKNERHLIRTSLQVLALQREGN---LVKIRKQRTAFPPNFVHSL 921
PV W TP+G+PVVQPY + T+LQ + L GN L + KQ +AFPPNFVHSL
Sbjct: 1138 PVAWVTPIGMPVVQPYHNAIKSTFSTNLQTIWLVETGNPSQLPAVGKQGSAFPPNFVHSL 1197
Query: 922 DGSHMMMTAVACRDAGLHFAGL 943
D +HMMMTA ACR G+ FA +
Sbjct: 1198 DSTHMMMTANACRKDGVAFASV 1219
>gi|157823583|ref|NP_001100236.1| DNA-directed RNA polymerase, mitochondrial [Rattus norvegicus]
gi|149034664|gb|EDL89401.1| polymerase (RNA) mitochondrial (DNA directed) (predicted), isoform
CRA_c [Rattus norvegicus]
Length = 1203
Score = 409 bits (1051), Expect = e-111, Method: Compositional matrix adjust.
Identities = 235/610 (38%), Positives = 349/610 (57%), Gaps = 35/610 (5%)
Query: 349 LKNEETKPWGRDTQAKLGSRLVELLIETAYVQHPVN-PADYSPPDVRPAFRHRFKTILKH 407
L+ +PW +LG +L ELL++ VQ P + A + + P H +
Sbjct: 528 LETPAQQPWSVPVLLQLGKQLAELLVQA--VQMPRSLAARHGAQNFIPVLYHVYSF---- 581
Query: 408 PGQKTTKRYGVVECDPLVLEGLDRSAKHMLI---PYVPMLVPPKKWKGYNKGGYLFLPSY 464
++ ++ G+++ P L+ +A+ L VPML PP W + G YL +
Sbjct: 582 ---RSYRQVGILKPHPAFTHLLETAAEPTLTFETTEVPMLCPPLPWTSLHSGAYLLSSTK 638
Query: 465 VMR-THGSRKQQEALKSVTGNCMKKVFEALDTLGSTKWRVNKQVLSVLESIWVSGGNIAG 523
+MR T G+ + Q L+ + +AL LG+ WRVN ++L ++ I+ G +
Sbjct: 639 IMRATEGTTQHQRLLERCPPAQLHGALDALTQLGNCAWRVNGRLLDLVLQIFRDKGCMRL 698
Query: 524 LVD--RNDVLIPEK-PLSEDMTEVQK--WKWSVRKAKKINQERHSQRCDTELKLSVARRM 578
V R++ P K L T V K + + + K +E HS R + +LS+A+ +
Sbjct: 699 GVPPPRSEAPRPAKHQLPPGSTPVHKSELRKELARCLKAAREMHSLRSEALYRLSLAQHL 758
Query: 579 KDEEGFYYPHNLDFRGRAYPMHPHLNHLSSDVCRGVLEFAEGRPLGKSGLRWLKIHLANL 638
+D F+ PHN+DFRGR YP PH NHL SD+ R +LEFAEGRPLG GL WLKIHL NL
Sbjct: 759 RDRV-FWLPHNMDFRGRTYPCPPHFNHLGSDLARALLEFAEGRPLGPRGLDWLKIHLINL 817
Query: 639 FSGGVEKLSHDGRLAFVENHLYEIFDSAENPINGSRWWLTAEDPFQCLAACINLSEALKS 698
+G ++ S RLAF + + EI DSA+NP+ G +WW+ A++P+Q LA C+ +++A++S
Sbjct: 818 -TGLRKRDSLRMRLAFADEVMGEILDSADNPLTGQKWWMKADEPWQTLACCMEVAQAVRS 876
Query: 699 SSPHSVISHLPIHQDGSCNGLQHYAALGRNTLEAAAVNLVAGEKPADVYSEIAVRVHEIM 758
P + +SHLP+HQDGSCNGLQHYAALGR+++ AA+VNL + P DVY E+A +V E+
Sbjct: 877 PDPTAYVSHLPVHQDGSCNGLQHYAALGRDSVGAASVNLTPSDLPQDVYREVATQVEELR 936
Query: 759 KRDSNKDPSKHPQALLAKILIDQVDRKLVKQTVMTSVYGVTFVGAREQIKRRLEEKGHIT 818
++D+ + +A+ L V RK+VKQTVMT VYGVT G R QI++RL E ++
Sbjct: 937 QQDAKEGLQ------VAQALEGFVSRKVVKQTVMTVVYGVTRYGGRLQIEKRLRE---LS 987
Query: 819 DDRQLFA--AACYAAKVTLTALGEIFEAARSIMGWLGDCAKVIASENQPVRWTTPLGLPV 876
D Q F A+ Y + +L E+F + R+I WL + A +I+ PV W TPLG+P+
Sbjct: 988 DFPQEFVWEASHYLVRQVFKSLQEMFSSTRAIQRWLTESANLISHAGWPVEWVTPLGIPI 1047
Query: 877 VQPYCKNERHLIRTSLQVLALQR---EGNLVKIRKQRTAFPPNFVHSLDGSHMMMTAVAC 933
+QPY + + ++ LQ + + KQ+ FPPNF+HSLD SHMM+TA+ C
Sbjct: 1048 IQPYHRESKIQVKGGLQSITFTSSVDDSQKPNTLKQKNGFPPNFIHSLDSSHMMLTALHC 1107
Query: 934 RDAGLHFAGL 943
GL F +
Sbjct: 1108 YRKGLTFVSV 1117
>gi|169621404|ref|XP_001804112.1| hypothetical protein SNOG_13911 [Phaeosphaeria nodorum SN15]
gi|111057416|gb|EAT78536.1| hypothetical protein SNOG_13911 [Phaeosphaeria nodorum SN15]
Length = 1542
Score = 409 bits (1051), Expect = e-111, Method: Compositional matrix adjust.
Identities = 224/589 (38%), Positives = 315/589 (53%), Gaps = 70/589 (11%)
Query: 414 KRYGVVECDPLVLEGLDRSAKHMLIPY-VPMLVPPKKWKGYNKGGYLFLPSYVMRTHGSR 472
K+ G + P ++ L + + + P +PM+V PK W + GGY P V+R
Sbjct: 617 KKIGYLSPHPELVGKLRKDSVANIQPVNLPMIVEPKPWTSFQDGGYYTQPQRVVRQKAGD 676
Query: 473 KQQEAL--KSVTGNCMKKVFEALDTLGSTKWRVNKQVLSVLESIWVSGGNIAGLVDRNDV 530
Q A ++ M KV LD LG W++N +L V+ W G IAGL+ N
Sbjct: 677 PAQRAYAESAIENGDMAKVLAGLDVLGKVPWQINAPILEVMLQAWNKGEGIAGLIPENHG 736
Query: 531 LIP--EKPLSEDMTEVQKWKWSVRKAKKINQERHSQRCDTELKLSVARRMKDEEGFYYPH 588
L P E P E KW +++ + + HSQRC +L +AR E+ Y+PH
Sbjct: 737 LEPPVEPPADAPRVERAKWAKKLQEHENLKSGLHSQRCFQNFQLEIARAFAAEKKIYFPH 796
Query: 589 NLDFRGRAYPMHPHLNHLSSDVCRGVLEFAEGRPLGKSGLRWLKIHLANLFSGGVEKLSH 648
++DFRGRAYP+ P LNH+ +D+ RG+L+FA G+ LG GL WLKIHLANL+ G +K S
Sbjct: 797 SVDFRGRAYPLSPVLNHIGADLARGLLKFANGKELGTVGLHWLKIHLANLY--GYDKASL 854
Query: 649 DGRLAFVENHLYEIFDSAENPINGSRWWLTAEDPFQCLAACINLSEALKSSSPHSVISHL 708
R F ++L +I+DSA NP++G RWWL AEDP+QCLA C+ L A S+ P S
Sbjct: 855 KEREQFAMDNLSDIYDSATNPLDGRRWWLNAEDPWQCLACCMELKNAFDSADPTRYKSQF 914
Query: 709 PIHQDGSCNGLQHYAALGRNTLEAAAVNLVAGEKPADVYSEIAVRVHEIMKRDSNKDPSK 768
P+HQDG+CNGLQHYAALG + A VNL ++P D+Y+ +A V ++K+D+ K
Sbjct: 915 PVHQDGTCNGLQHYAALGGDHAGARQVNLEPSDRPQDIYTGVAELVKGMVKKDAEKGVD- 973
Query: 769 HPQALLAKILIDQVDRKLVKQTVMTSVYGVTFVGAREQIKRRL-------EEKGHITDDR 821
+AK + ++ RK+VK+TVMT+VYGVTF+GA++Q++ L EE I R
Sbjct: 974 -----VAKFVDGRITRKVVKRTVMTNVYGVTFMGAKKQVEDELKAIFPKFEETEKI---R 1025
Query: 822 QLFAAACYAAKVTLTALGEIFEAARSIMGWLGDCA------------------------- 856
L A Y A ALG+IF A+ I WLG+C
Sbjct: 1026 SLGIVAMYVAIKIFEALGQIFNGAQEIQYWLGECGDRITTSLSAEQVEKIGQRGEGKEPT 1085
Query: 857 --------------------KVIASENQPVRWTTPLGLPVVQPYCKNERHLIRTSLQVLA 896
K I + + WTTPL +PVVQPY K+ +R Q +
Sbjct: 1086 FDPKFKTPKKLTKTHVTNMNKAIEAFKTSIIWTTPLKMPVVQPYRKDSTTRVRAKFQDIT 1145
Query: 897 LQREG--NLVKIRKQRTAFPPNFVHSLDGSHMMMTAVACRDAGLHFAGL 943
+ + ++V RKQ AFPPNF+HSLD +HM ++A+ C + GL FA +
Sbjct: 1146 VVKRSSHDIVDKRKQLQAFPPNFIHSLDATHMTLSALKCHELGLDFAAV 1194
>gi|71052166|gb|AAH98387.1| Polymerase (RNA) mitochondrial (DNA directed) [Homo sapiens]
Length = 1230
Score = 409 bits (1050), Expect = e-111, Method: Compositional matrix adjust.
Identities = 246/711 (34%), Positives = 385/711 (54%), Gaps = 46/711 (6%)
Query: 249 PHIELLPADKVAVIVMHKMMGLVMAGHEDRCVQVVQAAVHIGMAIEQEIRIHSFLEKTKN 308
P + LL +V +++ + L G + +A + Q R+ ++ +N
Sbjct: 469 PFLCLLDEREVVRMLLQVLQALPAQGESFTTLARELSARTFSRHVVQRQRVSGQVQALQN 528
Query: 309 YKRKKIIADTEEVLSKEKELLRKRVNSLIKSKRVMEAQKLLKNEETKPWGRDTQAKLGSR 368
+ RK + + E L R+ +L + + E +PW Q +LG
Sbjct: 529 HYRKYLCLLASDAEVPEPCLPRQYWEALGAPEALRE----------QPWPLPVQMELGKL 578
Query: 369 LVELLIETAYVQHPVNPADYSPPDVRPAFRHRFKTILKHPGQ-KTTKRYGVVECDPLVLE 427
L E+L++ + ++ +P R +L H + ++ G+++ P ++
Sbjct: 579 LAEMLVQATQMPCSLD---------KPHHSSRLVPVLYHVYSFRNVQQIGILKPHPAYVQ 629
Query: 428 GLDRSAKHMLI---PYVPMLVPPKKWKGYNKGGYLFLPSYVMRT-HGSRKQQEALKSVTG 483
L+++A+ L VPML PP W + G +L P+ +MRT G+ + QE L++
Sbjct: 630 LLEKAAEPTLTFEAVDVPMLCPPLPWTSPHSGAFLLSPTKLMRTVEGATQHQELLETCPP 689
Query: 484 NCMKKVFEALDTLGSTKWRVNKQVLSVLESIWVSGGNIAGLVDRNDVLIPEKP---LSED 540
+ +AL LG+ WRVN +VL ++ ++ + G V P+ P L
Sbjct: 690 TALHGALDALTQLGNCAWRVNGRVLDLVLQLFQAKGCPQLGVPAPPSEAPQPPEAHLPHS 749
Query: 541 MTEVQK--WKWSVRKAKKINQERHSQRCDTELKLSVARRMKDEEGFYYPHNLDFRGRAYP 598
+K + + +K+ +E HS R + +LS+A+ ++D F+ PHN+DFRGR YP
Sbjct: 750 AAPARKAELRRELAHCQKVAREMHSLRAEALYRLSLAQHLRDRV-FWLPHNMDFRGRTYP 808
Query: 599 MHPHLNHLSSDVCRGVLEFAEGRPLGKSGLRWLKIHLANLFSGGVEKLSHDGRLAFVENH 658
PH NHL SDV R +LEFA+GRPLG GL WLKIHL NL +G ++ RLAF E
Sbjct: 809 CPPHFNHLGSDVARALLEFAQGRPLGPHGLDWLKIHLVNL-TGLKKREPLRKRLAFAEEV 867
Query: 659 LYEIFDSAENPINGSRWWLTAEDPFQCLAACINLSEALKSSSPHSVISHLPIHQDGSCNG 718
+ +I DSA+ P+ G +WW+ AE+P+Q LA C+ ++ A+++S P + +SHLP+HQDGSCNG
Sbjct: 868 MDDILDSADQPLTGRKWWMGAEEPWQTLACCMEVANAVRASDPAAYVSHLPVHQDGSCNG 927
Query: 719 LQHYAALGRNTLEAAAVNLVAGEKPADVYSEIAVRVHEIMKRDSNKDPSKHPQALLAKIL 778
LQHYAALGR+++ AA+VNL + P DVYS +A +V ++D+ + +A++L
Sbjct: 928 LQHYAALGRDSVGAASVNLEPSDVPQDVYSGVAAQVEVFRRQDAQRG------MRVAQVL 981
Query: 779 IDQVDRKLVKQTVMTSVYGVTFVGAREQIKRRLEEKGHITDDRQLFA--AACYAAKVTLT 836
+ RK+VKQTVMT VYGVT G R QI++RL E ++D Q F A+ Y +
Sbjct: 982 EGFITRKVVKQTVMTVVYGVTRYGGRLQIEKRLRE---LSDFPQEFVWEASHYLVRQVFK 1038
Query: 837 ALGEIFEAARSIMGWLGDCAKVIASENQPVRWTTPLGLPVVQPYCKNER-HLIRTSLQVL 895
+L E+F R+I WL + A++I+ V W TPLG+PV+QPY + + I +Q +
Sbjct: 1039 SLQEMFSGTRAIQHWLTESARLISHMGSVVEWVTPLGVPVIQPYRLDSKVKQIGGGIQSI 1098
Query: 896 ALQREGNLVK---IRKQRTAFPPNFVHSLDGSHMMMTAVACRDAGLHFAGL 943
G++ + RKQ+ FPPNF+HSLD SHMM+TA+ C GL F +
Sbjct: 1099 TYTHNGDISRKPNTRKQKNGFPPNFIHSLDSSHMMLTALHCYRKGLTFVSV 1149
>gi|149034663|gb|EDL89400.1| polymerase (RNA) mitochondrial (DNA directed) (predicted), isoform
CRA_b [Rattus norvegicus]
Length = 1164
Score = 409 bits (1050), Expect = e-111, Method: Compositional matrix adjust.
Identities = 235/610 (38%), Positives = 349/610 (57%), Gaps = 35/610 (5%)
Query: 349 LKNEETKPWGRDTQAKLGSRLVELLIETAYVQHPVN-PADYSPPDVRPAFRHRFKTILKH 407
L+ +PW +LG +L ELL++ VQ P + A + + P H +
Sbjct: 528 LETPAQQPWSVPVLLQLGKQLAELLVQA--VQMPRSLAARHGAQNFIPVLYHVYSF---- 581
Query: 408 PGQKTTKRYGVVECDPLVLEGLDRSAKHMLI---PYVPMLVPPKKWKGYNKGGYLFLPSY 464
++ ++ G+++ P L+ +A+ L VPML PP W + G YL +
Sbjct: 582 ---RSYRQVGILKPHPAFTHLLETAAEPTLTFETTEVPMLCPPLPWTSLHSGAYLLSSTK 638
Query: 465 VMR-THGSRKQQEALKSVTGNCMKKVFEALDTLGSTKWRVNKQVLSVLESIWVSGGNIAG 523
+MR T G+ + Q L+ + +AL LG+ WRVN ++L ++ I+ G +
Sbjct: 639 IMRATEGTTQHQRLLERCPPAQLHGALDALTQLGNCAWRVNGRLLDLVLQIFRDKGCMRL 698
Query: 524 LVD--RNDVLIPEK-PLSEDMTEVQK--WKWSVRKAKKINQERHSQRCDTELKLSVARRM 578
V R++ P K L T V K + + + K +E HS R + +LS+A+ +
Sbjct: 699 GVPPPRSEAPRPAKHQLPPGSTPVHKSELRKELARCLKAAREMHSLRSEALYRLSLAQHL 758
Query: 579 KDEEGFYYPHNLDFRGRAYPMHPHLNHLSSDVCRGVLEFAEGRPLGKSGLRWLKIHLANL 638
+D F+ PHN+DFRGR YP PH NHL SD+ R +LEFAEGRPLG GL WLKIHL NL
Sbjct: 759 RDRV-FWLPHNMDFRGRTYPCPPHFNHLGSDLARALLEFAEGRPLGPRGLDWLKIHLINL 817
Query: 639 FSGGVEKLSHDGRLAFVENHLYEIFDSAENPINGSRWWLTAEDPFQCLAACINLSEALKS 698
+G ++ S RLAF + + EI DSA+NP+ G +WW+ A++P+Q LA C+ +++A++S
Sbjct: 818 -TGLRKRDSLRMRLAFADEVMGEILDSADNPLTGQKWWMKADEPWQTLACCMEVAQAVRS 876
Query: 699 SSPHSVISHLPIHQDGSCNGLQHYAALGRNTLEAAAVNLVAGEKPADVYSEIAVRVHEIM 758
P + +SHLP+HQDGSCNGLQHYAALGR+++ AA+VNL + P DVY E+A +V E+
Sbjct: 877 PDPTAYVSHLPVHQDGSCNGLQHYAALGRDSVGAASVNLTPSDLPQDVYREVATQVEELR 936
Query: 759 KRDSNKDPSKHPQALLAKILIDQVDRKLVKQTVMTSVYGVTFVGAREQIKRRLEEKGHIT 818
++D+ + +A+ L V RK+VKQTVMT VYGVT G R QI++RL E ++
Sbjct: 937 QQDAKEGLQ------VAQALEGFVSRKVVKQTVMTVVYGVTRYGGRLQIEKRLRE---LS 987
Query: 819 DDRQLFA--AACYAAKVTLTALGEIFEAARSIMGWLGDCAKVIASENQPVRWTTPLGLPV 876
D Q F A+ Y + +L E+F + R+I WL + A +I+ PV W TPLG+P+
Sbjct: 988 DFPQEFVWEASHYLVRQVFKSLQEMFSSTRAIQRWLTESANLISHAGWPVEWVTPLGIPI 1047
Query: 877 VQPYCKNERHLIRTSLQVLALQR---EGNLVKIRKQRTAFPPNFVHSLDGSHMMMTAVAC 933
+QPY + + ++ LQ + + KQ+ FPPNF+HSLD SHMM+TA+ C
Sbjct: 1048 IQPYHRESKIQVKGGLQSITFTSSVDDSQKPNTLKQKNGFPPNFIHSLDSSHMMLTALHC 1107
Query: 934 RDAGLHFAGL 943
GL F +
Sbjct: 1108 YRKGLTFVSV 1117
>gi|410209414|gb|JAA01926.1| polymerase (RNA) mitochondrial (DNA directed) [Pan troglodytes]
gi|410265918|gb|JAA20925.1| polymerase (RNA) mitochondrial (DNA directed) [Pan troglodytes]
gi|410349645|gb|JAA41426.1| polymerase (RNA) mitochondrial (DNA directed) [Pan troglodytes]
Length = 1230
Score = 409 bits (1050), Expect = e-111, Method: Compositional matrix adjust.
Identities = 247/711 (34%), Positives = 385/711 (54%), Gaps = 46/711 (6%)
Query: 249 PHIELLPADKVAVIVMHKMMGLVMAGHEDRCVQVVQAAVHIGMAIEQEIRIHSFLEKTKN 308
P + LL +V +++ + L G + +A + Q R+ ++ +N
Sbjct: 469 PFLCLLDEREVVRMLLQILQALPAQGESFTTLARELSARTFSRHVVQRQRVSGQVQALQN 528
Query: 309 YKRKKIIADTEEVLSKEKELLRKRVNSLIKSKRVMEAQKLLKNEETKPWGRDTQAKLGSR 368
+ RK + + E L R+ +L + + E +PW Q +LG
Sbjct: 529 HYRKYLCLLASDAEVPEPCLPRQYWEALGAPEALRE----------QPWPLPVQMELGKL 578
Query: 369 LVELLIETAYVQHPVNPADYSPPDVRPAFRHRFKTILKHPGQ-KTTKRYGVVECDPLVLE 427
L E+L++ + ++ +P R +L H + ++ G+++ P ++
Sbjct: 579 LAEMLVQATQMPCSLD---------KPHRSSRLVPVLYHVYSFRNVQQIGILKPHPAYVQ 629
Query: 428 GLDRSAKHMLI---PYVPMLVPPKKWKGYNKGGYLFLPSYVMRT-HGSRKQQEALKSVTG 483
L+++A+ L VPML PP W + G +L P+ +MRT G+ + QE L++
Sbjct: 630 LLEKAAEPTLTFEAVDVPMLCPPLPWTSPHSGAFLLSPTKLMRTVEGATQHQELLETCPP 689
Query: 484 NCMKKVFEALDTLGSTKWRVNKQVLSVLESIWVSGGNIAGLVDRNDVLIPEKP---LSED 540
+ +AL LG+ WRVN +VL ++ ++ + G V P+ P L
Sbjct: 690 TALHGALDALTQLGNCAWRVNGRVLDLVLQLFQAKGCPQLGVPAPPSEAPQPPEAHLPHS 749
Query: 541 MTEVQK--WKWSVRKAKKINQERHSQRCDTELKLSVARRMKDEEGFYYPHNLDFRGRAYP 598
+K + V +K+ +E HS R + +LS+A+ ++D F+ PHN+DFRGR YP
Sbjct: 750 AAPARKAELRREVVHCQKVAREMHSLRAEALYRLSLAQHLRDRV-FWLPHNMDFRGRTYP 808
Query: 599 MHPHLNHLSSDVCRGVLEFAEGRPLGKSGLRWLKIHLANLFSGGVEKLSHDGRLAFVENH 658
PH NHL SDV R +LEFA+GRPLG GL WLKIHL NL +G ++ RLAF E
Sbjct: 809 CPPHFNHLGSDVARALLEFAQGRPLGPHGLDWLKIHLVNL-TGLKKREPLRKRLAFAEEV 867
Query: 659 LYEIFDSAENPINGSRWWLTAEDPFQCLAACINLSEALKSSSPHSVISHLPIHQDGSCNG 718
+ +I DSA+ P+ G +WW+ AE+P+Q LA C+ ++ A+++S P + +SHLP+HQDGSCNG
Sbjct: 868 MDDILDSADQPLTGRKWWMGAEEPWQTLACCMEVANAVRASDPAAYVSHLPVHQDGSCNG 927
Query: 719 LQHYAALGRNTLEAAAVNLVAGEKPADVYSEIAVRVHEIMKRDSNKDPSKHPQALLAKIL 778
LQHYAALGR+++ AA+VNL + P DVYS +A +V ++D+ + +A++L
Sbjct: 928 LQHYAALGRDSVGAASVNLEPSDVPQDVYSGVAAQVEVFRRQDAQRG------MRVAQVL 981
Query: 779 IDQVDRKLVKQTVMTSVYGVTFVGAREQIKRRLEEKGHITDDRQLFA--AACYAAKVTLT 836
+ RK+VKQTVMT VYGVT G R QI++RL E ++D Q F A+ Y +
Sbjct: 982 EGFITRKVVKQTVMTVVYGVTRYGGRLQIEKRLRE---LSDFPQEFVWEASHYLVRQVFK 1038
Query: 837 ALGEIFEAARSIMGWLGDCAKVIASENQPVRWTTPLGLPVVQPYCKNER-HLIRTSLQVL 895
+L E+F R+I WL + A++I+ V W TPLG+PV+QPY + + I +Q +
Sbjct: 1039 SLQEMFSGTRAIQHWLTESARLISHMGSVVEWVTPLGVPVIQPYRLDSKVKQIGGGIQSI 1098
Query: 896 ALQREGNLVK---IRKQRTAFPPNFVHSLDGSHMMMTAVACRDAGLHFAGL 943
G++ + RKQ+ FPPNF+HSLD SHMM+TA+ C GL F +
Sbjct: 1099 TYTHNGDISRKPNTRKQKNGFPPNFIHSLDSSHMMLTALHCYRKGLTFVSV 1149
>gi|62089426|dbj|BAD93157.1| DNA-directed RNA polymerase variant [Homo sapiens]
Length = 1072
Score = 409 bits (1050), Expect = e-111, Method: Compositional matrix adjust.
Identities = 253/746 (33%), Positives = 401/746 (53%), Gaps = 48/746 (6%)
Query: 216 IKGLFLGWFGPLSEAI-EREQKMQR-TKKQKAAYAPHIELLPADKVAVIVMHKMMGLVMA 273
+K L W L A+ E + +++R + + + P + LL +V +++ + L
Sbjct: 276 LKTLRDQWEKALCRALRETKNRLEREVYEGRFSLYPFLCLLDEREVVRMLLQVLQALPAQ 335
Query: 274 GHEDRCVQVVQAAVHIGMAIEQEIRIHSFLEKTKNYKRKKIIADTEEVLSKEKELLRKRV 333
G + +A + Q R+ ++ +N+ RK + + E L R+
Sbjct: 336 GESFTTLARELSARTFSRHVVQRQRVSGQVQALQNHYRKYLCLLASDAEVPEPCLPRQYW 395
Query: 334 NSLIKSKRVMEAQKLLKNEETKPWGRDTQAKLGSRLVELLIETAYVQHPVNPADYSPPDV 393
+L + + E +PW Q +LG L E+L++ + ++
Sbjct: 396 EALGAPEALRE----------QPWPLPVQMELGKLLAEMLVQATQMPCSLD--------- 436
Query: 394 RPAFRHRFKTILKHPGQ-KTTKRYGVVECDPLVLEGLDRSAKHMLI---PYVPMLVPPKK 449
+P R +L H + ++ G+++ P ++ L+++A+ L VPML PP
Sbjct: 437 KPHRSSRLVPVLYHVYSFRNVQQIGILKPHPAYVQLLEKAAEPTLTFEAVDVPMLCPPLP 496
Query: 450 WKGYNKGGYLFLPSYVMRT-HGSRKQQEALKSVTGNCMKKVFEALDTLGSTKWRVNKQVL 508
W + G +L P+ +MRT G+ + QE L++ + +AL LG+ WRVN +VL
Sbjct: 497 WTSPHSGAFLLSPTKLMRTVEGATQHQELLETCPPTALHGALDALTQLGNCAWRVNGRVL 556
Query: 509 SVLESIWVSGGNIAGLVDRNDVLIPEKP---LSEDMTEVQK--WKWSVRKAKKINQERHS 563
++ ++ + G V P+ P L +K + + +K+ +E HS
Sbjct: 557 DLVLQLFQAKGCPQLGVPAPPSEAPQPPEAHLPHSAAPARKAELRRELAHCQKVAREMHS 616
Query: 564 QRCDTELKLSVARRMKDEEGFYYPHNLDFRGRAYPMHPHLNHLSSDVCRGVLEFAEGRPL 623
R + +LS+A+ ++D F+ PHN+DFRGR YP PH NHL SDV R +LEFA+GRPL
Sbjct: 617 LRAEALYRLSLAQHLRDRV-FWLPHNMDFRGRTYPCPPHFNHLGSDVARALLEFAQGRPL 675
Query: 624 GKSGLRWLKIHLANLFSGGVEKLSHDGRLAFVENHLYEIFDSAENPINGSRWWLTAEDPF 683
G GL WLKIHL NL +G ++ RLAF E + +I DSA+ P+ G +WW+ AE+P+
Sbjct: 676 GPHGLDWLKIHLVNL-TGLKKREPLRKRLAFAEEVMDDILDSADQPLTGRKWWMGAEEPW 734
Query: 684 QCLAACINLSEALKSSSPHSVISHLPIHQDGSCNGLQHYAALGRNTLEAAAVNLVAGEKP 743
Q LA C+ ++ A+++S P + +SHLP+HQDGSCNGLQHYAALGR+++ AA+VNL + P
Sbjct: 735 QTLACCMEVANAVRASDPAAYVSHLPVHQDGSCNGLQHYAALGRDSVGAASVNLEPSDVP 794
Query: 744 ADVYSEIAVRVHEIMKRDSNKDPSKHPQALLAKILIDQVDRKLVKQTVMTSVYGVTFVGA 803
DVYS +A +V ++D+ + +A++L + RK+VKQTVMT VYGVT G
Sbjct: 795 QDVYSGVAAQVEVFRRQDAQRG------MRVAQVLEGFITRKVVKQTVMTVVYGVTRYGG 848
Query: 804 REQIKRRLEEKGHITDDRQLFA--AACYAAKVTLTALGEIFEAARSIMGWLGDCAKVIAS 861
R QI++RL E ++D Q F A+ Y + +L E+F R+I WL + A++I+
Sbjct: 849 RLQIEKRLRE---LSDFPQEFVWEASHYLVRQVFKSLQEMFSGTRAIQHWLTESARLISH 905
Query: 862 ENQPVRWTTPLGLPVVQPY-CKNERHLIRTSLQVLALQREGNLVK---IRKQRTAFPPNF 917
V W TPLG+PV+QPY ++ I +Q + G++ + RKQ+ FPPNF
Sbjct: 906 MGSVVEWVTPLGVPVIQPYRLDSKVKQIGGGIQSITYTHNGDISRKPNTRKQKNGFPPNF 965
Query: 918 VHSLDGSHMMMTAVACRDAGLHFAGL 943
+HSLD SHMM+TA+ C GL F +
Sbjct: 966 IHSLDSSHMMLTALHCYRKGLTFVSV 991
>gi|194694606|gb|ACF81387.1| unknown [Zea mays]
Length = 323
Score = 408 bits (1049), Expect = e-111, Method: Compositional matrix adjust.
Identities = 190/254 (74%), Positives = 224/254 (88%)
Query: 690 INLSEALKSSSPHSVISHLPIHQDGSCNGLQHYAALGRNTLEAAAVNLVAGEKPADVYSE 749
+NL+EAL+SSSP + ISH+P+HQDGSCNGLQHYAALG++ L A AVNLVAGEKPADVY+
Sbjct: 1 MNLTEALRSSSPETTISHIPVHQDGSCNGLQHYAALGKDKLGAIAVNLVAGEKPADVYTG 60
Query: 750 IAVRVHEIMKRDSNKDPSKHPQALLAKILIDQVDRKLVKQTVMTSVYGVTFVGAREQIKR 809
IA RV EIM+ D+ KDPS P A A++++DQVDRKLVKQTVMTSVYGVT++GAREQI+R
Sbjct: 61 IANRVMEIMRMDAQKDPSVEPDAARARLIVDQVDRKLVKQTVMTSVYGVTYIGAREQIRR 120
Query: 810 RLEEKGHITDDRQLFAAACYAAKVTLTALGEIFEAARSIMGWLGDCAKVIASENQPVRWT 869
RL+E+G I +D +LF A+CYAAKVTLTALGE+F+AARSIM WLGDCAKVIA EN+PVRWT
Sbjct: 121 RLKERGVIPNDSELFGASCYAAKVTLTALGEMFQAARSIMNWLGDCAKVIACENEPVRWT 180
Query: 870 TPLGLPVVQPYCKNERHLIRTSLQVLALQREGNLVKIRKQRTAFPPNFVHSLDGSHMMMT 929
TPLGLPVVQPY K RHLI+TSLQVL LQRE + V +++QRTAFPPNFVHSLDGSHMMMT
Sbjct: 181 TPLGLPVVQPYRKLGRHLIKTSLQVLTLQRETDKVMVKRQRTAFPPNFVHSLDGSHMMMT 240
Query: 930 AVACRDAGLHFAGL 943
AVAC+ GL+FAG+
Sbjct: 241 AVACKRQGLNFAGV 254
>gi|330914797|ref|XP_003296788.1| hypothetical protein PTT_06972 [Pyrenophora teres f. teres 0-1]
gi|311330907|gb|EFQ95107.1| hypothetical protein PTT_06972 [Pyrenophora teres f. teres 0-1]
Length = 1430
Score = 408 bits (1049), Expect = e-111, Method: Compositional matrix adjust.
Identities = 280/846 (33%), Positives = 411/846 (48%), Gaps = 109/846 (12%)
Query: 181 RQVKQETEAWERMVDEYKELEAKMIEKRL--APNLPHIKGLFLGWFGPLSEAIER----- 233
RQ++ E + + V +K+ K+ + + N I+ + W+ L A ++
Sbjct: 368 RQLQMEQDGMDAAVKRWKQENEKLQDLGVHGVMNTKPIQAMMYSWYKALVPAFKKRIEHA 427
Query: 234 -----EQKMQRTKKQKAAYAPHIELLPADKVAVIVMHKMMGLVM--AGHEDRCVQVVQAA 286
E K++ +Y +E +K+A I + + + G ++ ++V +
Sbjct: 428 KKVLSESAKDMMKEEVNSYGVWLERCKPEKLAAITVARTTQAAVRNKGEDNSALKVSSLS 487
Query: 287 VHIGMAI------EQEIRIHSFLEKTKNYKRKKIIADTEEVLSKEKELLRKRVNSLIKSK 340
IG I E + R +FL+K +RK+ D LSK V+ +
Sbjct: 488 TSIGGEIQDYLDSESQARRDAFLKK----QRKQTRLDLFSKLSKNPS-----VSQTESGQ 538
Query: 341 RVMEAQKLLKNEETKPWGRDTQAKLGSRLVELLIETAYVQHPVNPADYSPPDVR--PAFR 398
R E+ L + E + KLG+ +E L+ A + R AF
Sbjct: 539 R--ESIASLDSFEKTTIPLQARTKLGAMCLENLLSCATLTVTAKDPRTGEEKSRSMAAFH 596
Query: 399 HRFKTILKHPGQKTTKRYGVVECDPLVLEGLDRSAKHMLIPY-VPMLVPPKKWKGYNKGG 457
H+ G K+ G + VL L + H + +PM++ PK W + GG
Sbjct: 597 HQV-------GFHQGKKLGFIVPHHEVLAKLRTESVHSIHNVRLPMVIEPKPWSSFEDGG 649
Query: 458 YLFLPSYVMRTHGSRKQQEAL--KSVTGNCMKKVFEALDTLGSTKWRVNKQVLSVLESIW 515
Y +P V+R G Q A ++ M KV LD LG W++N V V+ W
Sbjct: 650 YYTIPQKVVRQKGGDSSQRAYAQSAIENGDMSKVMAGLDVLGRVPWQINAPVFDVMARAW 709
Query: 516 VSGGNIAGLVDRNDVLIPEKPLS--EDMTEVQKWKWSVRKAKKINQ--ERHSQRCDTELK 571
+G ++ L+ V E+P D T ++ KW + N HSQRC +
Sbjct: 710 NAGESLGSLIGEKAVAALERPKEPPADATYQERAKWGKALKEYDNHIGGLHSQRCFQNFQ 769
Query: 572 LSVARRMKDEEGFYYPHNLDFRGRAYPMHPHLNHLSSDVCRGVLEFAEGRPLGKSGLRWL 631
L AR +E+ Y+PH++DFRGRAYP+ P LNH+ SDV RG+L+FA G+ LG GL+WL
Sbjct: 770 LETARAFLNEKKIYFPHSVDFRGRAYPIPPILNHIGSDVARGLLKFAHGKELGTVGLQWL 829
Query: 632 KIHLANLFSGGVEKLSHDGRLAFVENHLYEIFDSAENPINGSRWWLTAEDPFQCLAACIN 691
KIHLANL+ G +K S R F ++L EI DSA NP++G RWW AEDP+QCLA CI
Sbjct: 830 KIHLANLY--GFDKASLREREQFAMDNLDEIRDSASNPLDGRRWWAKAEDPWQCLACCIE 887
Query: 692 LSEALKSSSPHSVISHLPIHQDGSCNGLQHYAALGRNTLEAAAVNLVAGEKPADVYSEIA 751
L AL S P +S LP+HQDG+CNGLQHYAALG + A VNL ++P D+Y+ +A
Sbjct: 888 LKSALDSPDPTRFLSQLPVHQDGTCNGLQHYAALGGDHAGARQVNLEPSDRPQDIYTGVA 947
Query: 752 VRVHEIMKRDSNKDPSKHPQALLAKILIDQVDRKLVKQTVMTSVYGVTFVGAREQIK--- 808
V E++ +D+ K LAK + + RK+VK+TVMT+VYGVTF+GA+EQ+
Sbjct: 948 ELVKEMVSKDAAKGSE------LAKFVDGHISRKVVKRTVMTNVYGVTFMGAKEQVHDEL 1001
Query: 809 RRLEEKGHITDD-RQLFAAACYAAKVTLTALGEIFEAARSIMGWLGDCAKVIA---SENQ 864
R + K T+ + L + A Y A ALG+IF A+ I WLG+C + I +E Q
Sbjct: 1002 RNIFPKFEPTEKVKSLGSVALYIAYAIFEALGKIFNGAQEIQYWLGECGERITTSLTEEQ 1061
Query: 865 PVR---------------------------------------------WTTPLGLPVVQP 879
R WTTPL +P+VQP
Sbjct: 1062 IQRIHDRYEGIDPAKEVYDSKFTPPKKLTASQLTKFNKSMENFTTGIIWTTPLRMPIVQP 1121
Query: 880 YCKNERHLIRTSLQVLALQREG--NLVKIRKQRTAFPPNFVHSLDGSHMMMTAVACRDAG 937
Y K+ IRT +Q + + ++ + V RKQ AFPPNF+HSLD SHM+++A+ + G
Sbjct: 1122 YRKDSVQKIRTKIQDITVSKKSAKDEVDKRKQLQAFPPNFIHSLDASHMLLSALKASEMG 1181
Query: 938 LHFAGL 943
L FA +
Sbjct: 1182 LDFAAV 1187
>gi|347948643|pdb|3SPA|A Chain A, Crystal Structure Of Human Mitochondrial Rna Polymerase
Length = 1134
Score = 408 bits (1048), Expect = e-111, Method: Compositional matrix adjust.
Identities = 246/711 (34%), Positives = 385/711 (54%), Gaps = 46/711 (6%)
Query: 249 PHIELLPADKVAVIVMHKMMGLVMAGHEDRCVQVVQAAVHIGMAIEQEIRIHSFLEKTKN 308
P + LL +V +++ + L G + +A + Q R+ ++ +N
Sbjct: 373 PFLCLLDEREVVRMLLQVLQALPAQGESFTTLARELSARTFSRHVVQRQRVSGQVQALQN 432
Query: 309 YKRKKIIADTEEVLSKEKELLRKRVNSLIKSKRVMEAQKLLKNEETKPWGRDTQAKLGSR 368
+ RK + + E L R+ +L + + E +PW Q +LG
Sbjct: 433 HYRKYLCLLASDAEVPEPCLPRQYWEALGAPEALRE----------QPWPLPVQMELGKL 482
Query: 369 LVELLIETAYVQHPVNPADYSPPDVRPAFRHRFKTILKHPGQ-KTTKRYGVVECDPLVLE 427
L E+L++ + ++ +P R +L H + ++ G+++ P ++
Sbjct: 483 LAEMLVQATQMPCSLD---------KPHRSSRLVPVLYHVYSFRNVQQIGILKPHPAYVQ 533
Query: 428 GLDRSAKHMLI---PYVPMLVPPKKWKGYNKGGYLFLPSYVMRT-HGSRKQQEALKSVTG 483
L+++A+ L VPML PP W + G +L P+ +MRT G+ + QE L++
Sbjct: 534 LLEKAAEPTLTFEAVDVPMLCPPLPWTSPHSGAFLLSPTKLMRTVEGATQHQELLETCPP 593
Query: 484 NCMKKVFEALDTLGSTKWRVNKQVLSVLESIWVSGGNIAGLVDRNDVLIPEKP---LSED 540
+ +AL LG+ WRVN +VL ++ ++ + G V P+ P L
Sbjct: 594 TALHGALDALTQLGNCAWRVNGRVLDLVLQLFQAKGCPQLGVPAPPSEAPQPPEAHLPHS 653
Query: 541 MTEVQK--WKWSVRKAKKINQERHSQRCDTELKLSVARRMKDEEGFYYPHNLDFRGRAYP 598
+K + + +K+ +E HS R + +LS+A+ ++D F+ PHN+DFRGR YP
Sbjct: 654 AAPARKAELRRELAHCQKVAREMHSLRAEALYRLSLAQHLRDRV-FWLPHNMDFRGRTYP 712
Query: 599 MHPHLNHLSSDVCRGVLEFAEGRPLGKSGLRWLKIHLANLFSGGVEKLSHDGRLAFVENH 658
PH NHL SDV R +LEFA+GRPLG GL WLKIHL NL +G ++ RLAF E
Sbjct: 713 CPPHFNHLGSDVARALLEFAQGRPLGPHGLDWLKIHLVNL-TGLKKREPLRKRLAFAEEV 771
Query: 659 LYEIFDSAENPINGSRWWLTAEDPFQCLAACINLSEALKSSSPHSVISHLPIHQDGSCNG 718
+ +I DSA+ P+ G +WW+ AE+P+Q LA C+ ++ A+++S P + +SHLP+HQDGSCNG
Sbjct: 772 MDDILDSADQPLTGRKWWMGAEEPWQTLACCMEVANAVRASDPAAYVSHLPVHQDGSCNG 831
Query: 719 LQHYAALGRNTLEAAAVNLVAGEKPADVYSEIAVRVHEIMKRDSNKDPSKHPQALLAKIL 778
LQHYAALGR+++ AA+VNL + P DVYS +A +V ++D+ + +A++L
Sbjct: 832 LQHYAALGRDSVGAASVNLEPSDVPQDVYSGVAAQVEVFRRQDAQRG------MRVAQVL 885
Query: 779 IDQVDRKLVKQTVMTSVYGVTFVGAREQIKRRLEEKGHITDDRQLFA--AACYAAKVTLT 836
+ RK+VKQTVMT VYGVT G R QI++RL E ++D Q F A+ Y +
Sbjct: 886 EGFITRKVVKQTVMTVVYGVTRYGGRLQIEKRLRE---LSDFPQEFVWEASHYLVRQVFK 942
Query: 837 ALGEIFEAARSIMGWLGDCAKVIASENQPVRWTTPLGLPVVQPYCKNER-HLIRTSLQVL 895
+L E+F R+I WL + A++I+ V W TPLG+PV+QPY + + I +Q +
Sbjct: 943 SLQEMFSGTRAIQHWLTESARLISHMGSVVEWVTPLGVPVIQPYRLDSKVKQIGGGIQSI 1002
Query: 896 ALQREGNLVK---IRKQRTAFPPNFVHSLDGSHMMMTAVACRDAGLHFAGL 943
G++ + RKQ+ FPPNF+HSLD SHMM+TA+ C GL F +
Sbjct: 1003 TYTHNGDISRKPNTRKQKNGFPPNFIHSLDSSHMMLTALHCYRKGLTFVSV 1053
>gi|417406183|gb|JAA49758.1| Putative mitochondrial/chloroplast dna-directed rna polymer [Desmodus
rotundus]
Length = 1222
Score = 408 bits (1048), Expect = e-111, Method: Compositional matrix adjust.
Identities = 227/617 (36%), Positives = 356/617 (57%), Gaps = 31/617 (5%)
Query: 340 KRVMEAQKLLKNEETKPWGRDTQAKLGSRLVELLIETAYVQHPVNPAD-YSPPDVRPAFR 398
++ EA + + +PW +LG +L E+L++T V+ P + A ++ P
Sbjct: 542 RQYWEALGMPEAPHEQPWPLAVVVQLGKQLAEVLVQT--VKMPGHLAQRQGTHNLIPVLY 599
Query: 399 HRFKTILKHPGQKTTKRYGVVECDPLVLEGLDRSAKHMLI---PYVPMLVPPKKWKGYNK 455
H + ++ ++ G+++ P + L+ +A+ + VPML PP W +
Sbjct: 600 HVYSF-------RSFRQIGILKPHPAFKQLLETAAERTMTFEAAEVPMLCPPLPWTSPHS 652
Query: 456 GGYLFLPSYVMRT-HGSRKQQEALKSVTGNCMKKVFEALDTLGSTKWRVNKQVLSVLESI 514
G +L P+ +MR+ G+ + Q L+S + + L LG+ WRVN +VL ++ ++
Sbjct: 653 GAFLLSPTKLMRSVEGTMQHQRLLESCPPTNLHGALDTLTQLGNCAWRVNGRVLDLVLTL 712
Query: 515 WVSGGNIAGLVDRNDVLIPEKP---LSEDMTEVQKWKWSVRKAK--KINQERHSQRCDTE 569
+ G V P P LS + +K + + A+ K+ +E HS R D
Sbjct: 713 FNKKGCPRLGVPAPASEAPRPPENRLSTKASPERKVELRRQLARCLKVAREMHSLRTDAL 772
Query: 570 LKLSVARRMKDEEGFYYPHNLDFRGRAYPMHPHLNHLSSDVCRGVLEFAEGRPLGKSGLR 629
+LS+A+ +++ F+ PHN+DFRGR YP PH NHL SD+ R +LEFA+GRPLG GL
Sbjct: 773 YRLSLAQHLRNSV-FWLPHNMDFRGRTYPCPPHFNHLGSDLARALLEFAQGRPLGPHGLD 831
Query: 630 WLKIHLANLFSGGVEKLSHDGRLAFVENHLYEIFDSAENPINGSRWWLTAEDPFQCLAAC 689
WLKIHL NL +G ++ S RLAF + + +I DSA+ P+ G +WW+ A++P+Q LA C
Sbjct: 832 WLKIHLVNL-TGLKKRESLQARLAFADEMMNKILDSADKPMTGHKWWMEADEPWQALACC 890
Query: 690 INLSEALKSSSPHSVISHLPIHQDGSCNGLQHYAALGRNTLEAAAVNLVAGEKPADVYSE 749
+ +++A+++ P + +SH P+HQDGSCNGLQHYAALGR+++ AA+VNLV + P DVYS
Sbjct: 891 MEIAQAVRAPDPAAYVSHFPVHQDGSCNGLQHYAALGRDSVGAASVNLVPSDLPQDVYSS 950
Query: 750 IAVRVHEIMKRDSNKDPSKHPQALLAKILIDQVDRKLVKQTVMTSVYGVTFVGAREQIKR 809
+A +V ++D+ + +A++L + RK+VKQTVMT VYGVT G R QI++
Sbjct: 951 VAAQVEVFRRQDAEQG------VQVAQVLEGFISRKVVKQTVMTVVYGVTRYGGRLQIEK 1004
Query: 810 RLEEKGHITDDRQLFAAACYAAKVTLTALGEIFEAARSIMGWLGDCAKVIASENQPVRWT 869
RL E + + ++ A+ Y + +L E+F R+I WL + A++IA V W
Sbjct: 1005 RLREISNFPQEF-VWQASHYLVRQVFNSLQEMFSGTRAIQHWLAESARLIAHTGLAVEWV 1063
Query: 870 TPLGLPVVQPYCKNERHLIRTSLQVLALQREGNLVK---IRKQRTAFPPNFVHSLDGSHM 926
TPLG+P++QPY + + LI +Q L+ G+ + I KQ+ FPPNF+HSLD SHM
Sbjct: 1064 TPLGIPIIQPYHHDSKVLISGGIQSLSFSSTGDTSQKPNILKQKNGFPPNFIHSLDSSHM 1123
Query: 927 MMTAVACRDAGLHFAGL 943
M+TA+ C GL F +
Sbjct: 1124 MLTALHCYRKGLTFVSV 1140
>gi|2114396|gb|AAB58255.1| mitochondrial RNA polymerase [Homo sapiens]
Length = 1230
Score = 407 bits (1047), Expect = e-110, Method: Compositional matrix adjust.
Identities = 246/711 (34%), Positives = 384/711 (54%), Gaps = 46/711 (6%)
Query: 249 PHIELLPADKVAVIVMHKMMGLVMAGHEDRCVQVVQAAVHIGMAIEQEIRIHSFLEKTKN 308
P + LL +V +++ + L G + +A + Q R+ ++ +N
Sbjct: 469 PFLCLLDEREVVRMLLQVLQALPAQGESFTTLARELSARTFSRHVVQRQRVSGQVQALQN 528
Query: 309 YKRKKIIADTEEVLSKEKELLRKRVNSLIKSKRVMEAQKLLKNEETKPWGRDTQAKLGSR 368
+ RK + + E L R+ L + + E +PW Q +LG
Sbjct: 529 HYRKYLCLLASDAEVPEPCLPRQYWEELGAPEALRE----------QPWPLPVQMELGKL 578
Query: 369 LVELLIETAYVQHPVNPADYSPPDVRPAFRHRFKTILKHPGQ-KTTKRYGVVECDPLVLE 427
L E+L++ + ++ +P R +L H + ++ G+++ P ++
Sbjct: 579 LAEMLVQATQMPCSLD---------KPHRSSRLVPVLYHVYSFRNVQQIGILKPHPAYVQ 629
Query: 428 GLDRSAKHMLI---PYVPMLVPPKKWKGYNKGGYLFLPSYVMRT-HGSRKQQEALKSVTG 483
L+++A+ L VPML PP W + G +L P+ +MRT G+ + QE L++
Sbjct: 630 LLEKAAEPTLTFEAVDVPMLCPPLPWTSPHSGAFLLSPTKLMRTVEGATQHQELLETCPP 689
Query: 484 NCMKKVFEALDTLGSTKWRVNKQVLSVLESIWVSGGNIAGLVDRNDVLIPEKP---LSED 540
+ +AL LG+ WRVN +VL ++ ++ + G V P+ P L
Sbjct: 690 TALHGALDALTQLGNCAWRVNGRVLDLVLQLFQAKGCPQLGVPAPPSEAPQPPEAHLPHS 749
Query: 541 MTEVQK--WKWSVRKAKKINQERHSQRCDTELKLSVARRMKDEEGFYYPHNLDFRGRAYP 598
+K + + +K+ +E HS R + +LS+A+ ++D F+ PHN+DFRGR YP
Sbjct: 750 AAPARKAELRRELAHCQKVAREMHSLRAEALYRLSLAQHLRDRV-FWLPHNMDFRGRTYP 808
Query: 599 MHPHLNHLSSDVCRGVLEFAEGRPLGKSGLRWLKIHLANLFSGGVEKLSHDGRLAFVENH 658
PH NHL SDV R +LEFA+GRPLG GL WLKIHL NL +G ++ RLAF E
Sbjct: 809 CPPHFNHLGSDVARALLEFAQGRPLGPHGLDWLKIHLVNL-TGLKKREPLRKRLAFAEEV 867
Query: 659 LYEIFDSAENPINGSRWWLTAEDPFQCLAACINLSEALKSSSPHSVISHLPIHQDGSCNG 718
+ +I DSA+ P+ G +WW+ AE+P+Q LA C+ ++ A+++S P + +SHLP+HQDGSCNG
Sbjct: 868 MDDILDSADQPLTGRKWWMGAEEPWQTLACCMEVANAVRASDPAAYVSHLPVHQDGSCNG 927
Query: 719 LQHYAALGRNTLEAAAVNLVAGEKPADVYSEIAVRVHEIMKRDSNKDPSKHPQALLAKIL 778
LQHYAALGR+++ AA+VNL + P DVYS +A +V ++D+ + +A++L
Sbjct: 928 LQHYAALGRDSVGAASVNLEPSDVPQDVYSGVAAQVEVFRRQDAQRG------MRVAQVL 981
Query: 779 IDQVDRKLVKQTVMTSVYGVTFVGAREQIKRRLEEKGHITDDRQLFA--AACYAAKVTLT 836
+ RK+VKQTVMT VYGVT G R QI++RL E ++D Q F A+ Y +
Sbjct: 982 ESFITRKVVKQTVMTVVYGVTRYGGRLQIEKRLRE---LSDFPQEFVWEASHYLVRQVFK 1038
Query: 837 ALGEIFEAARSIMGWLGDCAKVIASENQPVRWTTPLGLPVVQPYCKNER-HLIRTSLQVL 895
+L E+F R+I WL + A++I+ V W TPLG+PV+QPY + + I +Q +
Sbjct: 1039 SLQEMFSGTRAIQHWLTESARLISHMGSVVEWVTPLGVPVIQPYRLDSKVKQIGGGIQSI 1098
Query: 896 ALQREGNLVK---IRKQRTAFPPNFVHSLDGSHMMMTAVACRDAGLHFAGL 943
G++ + RKQ+ FPPNF+HSLD SHMM+TA+ C GL F +
Sbjct: 1099 TYTHNGDISRKPNTRKQKNGFPPNFIHSLDSSHMMLTALHCYRKGLTFVSV 1149
>gi|119581582|gb|EAW61178.1| polymerase (RNA) mitochondrial (DNA directed), isoform CRA_b [Homo
sapiens]
Length = 1245
Score = 407 bits (1047), Expect = e-110, Method: Compositional matrix adjust.
Identities = 246/711 (34%), Positives = 384/711 (54%), Gaps = 46/711 (6%)
Query: 249 PHIELLPADKVAVIVMHKMMGLVMAGHEDRCVQVVQAAVHIGMAIEQEIRIHSFLEKTKN 308
P + LL +V +++ + L G + +A + Q R+ ++ +N
Sbjct: 484 PFLCLLDEREVVRMLLQVLQALPAQGESFTTLARELSARTFSRHVVQRQRVSGQVQALQN 543
Query: 309 YKRKKIIADTEEVLSKEKELLRKRVNSLIKSKRVMEAQKLLKNEETKPWGRDTQAKLGSR 368
+ RK + + E L R+ L + + E +PW Q +LG
Sbjct: 544 HYRKYLCLLASDAEVPEPCLPRQYWEELGAPEALRE----------QPWPLPVQMELGKL 593
Query: 369 LVELLIETAYVQHPVNPADYSPPDVRPAFRHRFKTILKHPGQ-KTTKRYGVVECDPLVLE 427
L E+L++ + ++ +P R +L H + ++ G+++ P ++
Sbjct: 594 LAEMLVQATQMPCSLD---------KPHRSSRLVPVLYHVYSFRNVQQIGILKPHPAYVQ 644
Query: 428 GLDRSAKHMLI---PYVPMLVPPKKWKGYNKGGYLFLPSYVMRT-HGSRKQQEALKSVTG 483
L+++A+ L VPML PP W + G +L P+ +MRT G+ + QE L++
Sbjct: 645 LLEKAAEPTLTFEAVDVPMLCPPLPWTSPHSGAFLLSPTKLMRTVEGATQHQELLETCPP 704
Query: 484 NCMKKVFEALDTLGSTKWRVNKQVLSVLESIWVSGGNIAGLVDRNDVLIPEKP---LSED 540
+ +AL LG+ WRVN +VL ++ ++ + G V P+ P L
Sbjct: 705 TALHGALDALTQLGNCAWRVNGRVLDLVLQLFQAKGCPQLGVPAPPSEAPQPPEAHLPHS 764
Query: 541 MTEVQK--WKWSVRKAKKINQERHSQRCDTELKLSVARRMKDEEGFYYPHNLDFRGRAYP 598
+K + + +K+ +E HS R + +LS+A+ ++D F+ PHN+DFRGR YP
Sbjct: 765 AAPARKAELRRELAHCQKVAREMHSLRAEALYRLSLAQHLRDRV-FWLPHNMDFRGRTYP 823
Query: 599 MHPHLNHLSSDVCRGVLEFAEGRPLGKSGLRWLKIHLANLFSGGVEKLSHDGRLAFVENH 658
PH NHL SDV R +LEFA+GRPLG GL WLKIHL NL +G ++ RLAF E
Sbjct: 824 CPPHFNHLGSDVARALLEFAQGRPLGPHGLDWLKIHLVNL-TGLKKREPLRKRLAFAEEV 882
Query: 659 LYEIFDSAENPINGSRWWLTAEDPFQCLAACINLSEALKSSSPHSVISHLPIHQDGSCNG 718
+ +I DSA+ P+ G +WW+ AE+P+Q LA C+ ++ A+++S P + +SHLP+HQDGSCNG
Sbjct: 883 MDDILDSADQPLTGRKWWMGAEEPWQTLACCMEVANAVRASDPAAYVSHLPVHQDGSCNG 942
Query: 719 LQHYAALGRNTLEAAAVNLVAGEKPADVYSEIAVRVHEIMKRDSNKDPSKHPQALLAKIL 778
LQHYAALGR+++ AA+VNL + P DVYS +A +V ++D+ + +A++L
Sbjct: 943 LQHYAALGRDSVGAASVNLEPSDVPQDVYSGVAAQVEVFRRQDAQRG------MRVAQVL 996
Query: 779 IDQVDRKLVKQTVMTSVYGVTFVGAREQIKRRLEEKGHITDDRQLFA--AACYAAKVTLT 836
+ RK+VKQTVMT VYGVT G R QI++RL E ++D Q F A+ Y +
Sbjct: 997 EGFITRKVVKQTVMTVVYGVTRYGGRLQIEKRLRE---LSDFPQEFVWEASHYLVRQVFK 1053
Query: 837 ALGEIFEAARSIMGWLGDCAKVIASENQPVRWTTPLGLPVVQPYCKNER-HLIRTSLQVL 895
+L E+F R+I WL + A++I+ V W TPLG+PV+QPY + + I +Q +
Sbjct: 1054 SLQEMFSGTRAIQHWLTESARLISHMGSVVEWVTPLGVPVIQPYRLDSKVKQIGGGIQSI 1113
Query: 896 ALQREGNLVK---IRKQRTAFPPNFVHSLDGSHMMMTAVACRDAGLHFAGL 943
G++ + RKQ+ FPPNF+HSLD SHMM+TA+ C GL F +
Sbjct: 1114 TYTHNGDISRKPNTRKQKNGFPPNFIHSLDSSHMMLTALHCYRKGLTFVSV 1164
>gi|110618253|ref|NP_005026.3| DNA-directed RNA polymerase, mitochondrial precursor [Homo sapiens]
gi|50403691|sp|O00411.2|RPOM_HUMAN RecName: Full=DNA-directed RNA polymerase, mitochondrial;
Short=MtRPOL; Flags: Precursor
gi|2979529|gb|AAC06147.1| RPOM_HUMAN [Homo sapiens]
Length = 1230
Score = 407 bits (1047), Expect = e-110, Method: Compositional matrix adjust.
Identities = 246/711 (34%), Positives = 384/711 (54%), Gaps = 46/711 (6%)
Query: 249 PHIELLPADKVAVIVMHKMMGLVMAGHEDRCVQVVQAAVHIGMAIEQEIRIHSFLEKTKN 308
P + LL +V +++ + L G + +A + Q R+ ++ +N
Sbjct: 469 PFLCLLDEREVVRMLLQVLQALPAQGESFTTLARELSARTFSRHVVQRQRVSGQVQALQN 528
Query: 309 YKRKKIIADTEEVLSKEKELLRKRVNSLIKSKRVMEAQKLLKNEETKPWGRDTQAKLGSR 368
+ RK + + E L R+ L + + E +PW Q +LG
Sbjct: 529 HYRKYLCLLASDAEVPEPCLPRQYWEELGAPEALRE----------QPWPLPVQMELGKL 578
Query: 369 LVELLIETAYVQHPVNPADYSPPDVRPAFRHRFKTILKHPGQ-KTTKRYGVVECDPLVLE 427
L E+L++ + ++ +P R +L H + ++ G+++ P ++
Sbjct: 579 LAEMLVQATQMPCSLD---------KPHRSSRLVPVLYHVYSFRNVQQIGILKPHPAYVQ 629
Query: 428 GLDRSAKHMLI---PYVPMLVPPKKWKGYNKGGYLFLPSYVMRT-HGSRKQQEALKSVTG 483
L+++A+ L VPML PP W + G +L P+ +MRT G+ + QE L++
Sbjct: 630 LLEKAAEPTLTFEAVDVPMLCPPLPWTSPHSGAFLLSPTKLMRTVEGATQHQELLETCPP 689
Query: 484 NCMKKVFEALDTLGSTKWRVNKQVLSVLESIWVSGGNIAGLVDRNDVLIPEKP---LSED 540
+ +AL LG+ WRVN +VL ++ ++ + G V P+ P L
Sbjct: 690 TALHGALDALTQLGNCAWRVNGRVLDLVLQLFQAKGCPQLGVPAPPSEAPQPPEAHLPHS 749
Query: 541 MTEVQK--WKWSVRKAKKINQERHSQRCDTELKLSVARRMKDEEGFYYPHNLDFRGRAYP 598
+K + + +K+ +E HS R + +LS+A+ ++D F+ PHN+DFRGR YP
Sbjct: 750 AAPARKAELRRELAHCQKVAREMHSLRAEALYRLSLAQHLRDRV-FWLPHNMDFRGRTYP 808
Query: 599 MHPHLNHLSSDVCRGVLEFAEGRPLGKSGLRWLKIHLANLFSGGVEKLSHDGRLAFVENH 658
PH NHL SDV R +LEFA+GRPLG GL WLKIHL NL +G ++ RLAF E
Sbjct: 809 CPPHFNHLGSDVARALLEFAQGRPLGPHGLDWLKIHLVNL-TGLKKREPLRKRLAFAEEV 867
Query: 659 LYEIFDSAENPINGSRWWLTAEDPFQCLAACINLSEALKSSSPHSVISHLPIHQDGSCNG 718
+ +I DSA+ P+ G +WW+ AE+P+Q LA C+ ++ A+++S P + +SHLP+HQDGSCNG
Sbjct: 868 MDDILDSADQPLTGRKWWMGAEEPWQTLACCMEVANAVRASDPAAYVSHLPVHQDGSCNG 927
Query: 719 LQHYAALGRNTLEAAAVNLVAGEKPADVYSEIAVRVHEIMKRDSNKDPSKHPQALLAKIL 778
LQHYAALGR+++ AA+VNL + P DVYS +A +V ++D+ + +A++L
Sbjct: 928 LQHYAALGRDSVGAASVNLEPSDVPQDVYSGVAAQVEVFRRQDAQRG------MRVAQVL 981
Query: 779 IDQVDRKLVKQTVMTSVYGVTFVGAREQIKRRLEEKGHITDDRQLFA--AACYAAKVTLT 836
+ RK+VKQTVMT VYGVT G R QI++RL E ++D Q F A+ Y +
Sbjct: 982 EGFITRKVVKQTVMTVVYGVTRYGGRLQIEKRLRE---LSDFPQEFVWEASHYLVRQVFK 1038
Query: 837 ALGEIFEAARSIMGWLGDCAKVIASENQPVRWTTPLGLPVVQPYCKNER-HLIRTSLQVL 895
+L E+F R+I WL + A++I+ V W TPLG+PV+QPY + + I +Q +
Sbjct: 1039 SLQEMFSGTRAIQHWLTESARLISHMGSVVEWVTPLGVPVIQPYRLDSKVKQIGGGIQSI 1098
Query: 896 ALQREGNLVK---IRKQRTAFPPNFVHSLDGSHMMMTAVACRDAGLHFAGL 943
G++ + RKQ+ FPPNF+HSLD SHMM+TA+ C GL F +
Sbjct: 1099 TYTHNGDISRKPNTRKQKNGFPPNFIHSLDSSHMMLTALHCYRKGLTFVSV 1149
>gi|389643156|ref|XP_003719210.1| DNA-directed RNA polymerase [Magnaporthe oryzae 70-15]
gi|351638979|gb|EHA46843.1| DNA-directed RNA polymerase [Magnaporthe oryzae 70-15]
Length = 1422
Score = 407 bits (1045), Expect = e-110, Method: Compositional matrix adjust.
Identities = 256/755 (33%), Positives = 387/755 (51%), Gaps = 96/755 (12%)
Query: 259 VAVIVMHKMMGLVMAGHEDRCVQVVQAAVHIGMAIEQEIRIHSFLEKTKNYKRKKIIADT 318
A+ ++ M L M G D+ + + Q + + E++ + +++ KR+K++
Sbjct: 440 AALTILSVMSSLAMHG-VDKGITITQTIATVARSAEEDA---AAFQRSVRQKREKLMRKN 495
Query: 319 EEVLSKEK--ELLRKRVNSLIKSKRVMEAQKLLKNEETKPWGRDTQAKLGSRLVELLIET 376
+K E +S ++ + + Q + + W + +GS L+ L++
Sbjct: 496 GFARAKAAGAEPNAPGTDSTLRVTDIYDIQ----TDSAERWPASIRLTIGSVLLSSLVDV 551
Query: 377 AYV----QHPVNPADYSPPDVRPAFRHRFKTILKHPGQKTTKRYGVVECDPLVLEGLDRS 432
A + +HP S +PAF + K K+YG + + +++ + R
Sbjct: 552 ATITVTKEHPETRETISAE--QPAFARSIQY-------KQGKKYGTLAPNKSLVQLMMRE 602
Query: 433 A-KHMLIPYVPMLVPPKKWKGYNKGGYLFLPSYVMRTHGSRKQQE--ALKSVTGNCMKKV 489
K L ++PM+ P W ++KGGYL P++++R K Q+ A ++ M++V
Sbjct: 603 PRKEFLARHLPMVCKPDPWTKFDKGGYLDQPTHLVRIKRGEKDQKLYAEAAMARGDMEQV 662
Query: 490 FEALDTLGSTKWRVNKQVLSVLESIWVSGGNIAGLVDRN-DVLIPEKPL-SEDMTEVQKW 547
+ LD LG W +NK VL V+ +W SG I G+ + D+ PE+P SED +W
Sbjct: 663 AKGLDALGRVGWNINKSVLDVVLQVWNSGEGIGGIPPLSVDIKAPEEPSPSEDPMVRFRW 722
Query: 548 KWSVRKAKKINQERHSQRCDTELKLSVARRMKDEEGFYYPHNLDFRGRAYPMHPHLNHLS 607
++K + I HSQRC T +L +A +D+ Y+PHN+DFRGRAYP+ +LNH+
Sbjct: 723 IRELKKVENIKASYHSQRCHTNFQLEIAHAYRDQT-LYFPHNVDFRGRAYPLPIYLNHIG 781
Query: 608 SDVCRGVLEFAEGRPLGKSGLRWLKIHLANLFSGGVEKLSHDGRLAFVENHLYEIFDSAE 667
+D+ R +L F + +PLG+ GL+WLK+HLAN++ G +K S R F +H+ +I DSA
Sbjct: 782 ADLSRALLLFDKAKPLGEDGLQWLKVHLANVY--GFDKASLSERAQFALDHIEDIVDSAT 839
Query: 668 NPINGSRWWLTAEDPFQCLAACINLSEALKSSSPHSVISHLPIHQDGSCNGLQHYAALGR 727
NP++G RWWL AEDP+QCLA C L A P LP+HQDG+CNGLQHYAALG
Sbjct: 840 NPLSGKRWWLGAEDPWQCLATCKELKAAFDMPDPAQYECRLPVHQDGTCNGLQHYAALGG 899
Query: 728 NTLEAAAVNLVAGEKPADVYSEIAVRVHEIMKRDSNKDPSKHPQALLAKILIDQVDRKLV 787
++ A VNL G++PADVY+ +A V E ++ D K +A L ++ RK+V
Sbjct: 900 DSWGARQVNLEPGDRPADVYTAVANLVSESIEEDIAKG------VKMAAALKGKIKRKVV 953
Query: 788 KQTVMTSVYGVTFVGAREQIKRRLEEKGHITDDRQLFAA---ACYAAKVTLTALGEIFEA 844
KQTVMT+VYGVTFVGA+ Q+K++L+ F A A Y A A+ +F
Sbjct: 954 KQTVMTNVYGVTFVGAKSQVKKQLDAFYPDIKKETGFDASHLAVYIAAKIFKAMSTMFRG 1013
Query: 845 ARSIMGWLGDCA------------------------------------------KVIASE 862
A I WLG+ +V+AS
Sbjct: 1014 AHDIQYWLGEIGSRVCRAVTPDQMVRLSEEMMRPQKQKEKALKTLATTGNPEYDQVLASY 1073
Query: 863 NQP------------VRWTTPLGLPVVQPYCKNERHLIRTSLQVLALQREG--NLVKIRK 908
N+ + WTTPL +PVVQPY K +I+T+ Q L L+ + V +K
Sbjct: 1074 NKASLGDLLSQFRSTIIWTTPLRMPVVQPYRKAAVKIIKTNFQDLILRVSDPWDPVHKQK 1133
Query: 909 QRTAFPPNFVHSLDGSHMMMTAVACRDAGLHFAGL 943
Q AFPPNFVHSLD SHMM++A+ C GL FA +
Sbjct: 1134 QLQAFPPNFVHSLDASHMMLSALECDSNGLTFAAV 1168
>gi|89148152|gb|ABD62818.1| mitochondrial single-subunit RNA polymerase [Liceales sp. orange
ball]
Length = 392
Score = 406 bits (1043), Expect = e-110, Method: Compositional matrix adjust.
Identities = 194/395 (49%), Positives = 265/395 (67%), Gaps = 12/395 (3%)
Query: 552 RKAKKINQERHSQRCDTELKLSVARRMKDEEGFYYPHNLDFRGRAYPMHPHLNHLSSDVC 611
RK +++N + HS CD KL VA +M D FY PHN+DFRGRAYP+ PHLN L SD+C
Sbjct: 4 RKVRQLNNDLHSLWCDATYKLDVAAKMMDHT-FYLPHNVDFRGRAYPLPPHLNQLGSDLC 62
Query: 612 RGVLEFAEGRPLGKSGLRWLKIHLANLFSGGVEKLSHDGRLAFVENHLYEIFDSAENPIN 671
RG+L +PLG GL WLK+HLANL+ GV+K+ + R+AFV+ ++ + D+ +NP+
Sbjct: 63 RGLLLLDTAKPLGPRGLWWLKVHLANLY--GVDKVPFEARVAFVDKNIDNVMDAGDNPLG 120
Query: 672 GSRWWLTAEDPFQCLAACINLSEALKSSSPHSVISHLPIHQDGSCNGLQHYAALGRNTLE 731
G WWL A+DP+QCLA C L+ A++S P + S +P+HQDGSCNGLQHYAALG + +
Sbjct: 121 GRMWWLKADDPWQCLATCTELTAAIRSGDPENFKSRIPVHQDGSCNGLQHYAALGGDEIG 180
Query: 732 AAAVNLVAGEKPADVYSEIAVRVHEIMKRDSNKDPSKHPQALLAKILIDQVDRKLVKQTV 791
A VNL+ + P DVY+ +A V KR + + H L K+L +VDRK+VKQTV
Sbjct: 181 ARKVNLIPSDSPQDVYAGVATLV---AKRIHDDAEAGHE---LGKLLDGKVDRKVVKQTV 234
Query: 792 MTSVYGVTFVGAREQIKRRLEEKG-HITDDRQLFAAACYAAKVTLTALGEIFEAARSIMG 850
MTSVYGVT++GAR QI L++K DD QL+ A+ Y T +L ++F AR+IM
Sbjct: 235 MTSVYGVTYIGARLQIHNALQDKEIDWRDDDQLYHASAYVTNHTFESLNQMFLGARNIMK 294
Query: 851 WLGDCAKVIASENQPVRWTTPLGLPVVQPYCKNERHLIRTSLQVLALQREGN--LVKIRK 908
WL DCA+++A + +PV W TPLGLP+VQPY K + ++T +Q + L +G V K
Sbjct: 295 WLADCARIVAKQKEPVAWVTPLGLPIVQPYVKTGNYQVKTVVQSVVLSEDGKDMPVNTMK 354
Query: 909 QRTAFPPNFVHSLDGSHMMMTAVACRDAGLHFAGL 943
QR+AFPPN+VHSLD SHMM+TA+ C G+ +A +
Sbjct: 355 QRSAFPPNYVHSLDSSHMMLTAIECARRGIDYASV 389
>gi|432101125|gb|ELK29409.1| DNA-directed RNA polymerase, mitochondrial [Myotis davidii]
Length = 1219
Score = 405 bits (1041), Expect = e-110, Method: Compositional matrix adjust.
Identities = 228/618 (36%), Positives = 354/618 (57%), Gaps = 41/618 (6%)
Query: 344 EAQKLLKNEETKPWGRDTQAKLGSRLVELLIETAYVQHPVNPADYSPPD-VRPAFRHRFK 402
EA + + +PW +LG +L E+L++T V+ P N A + P H +
Sbjct: 543 EALGTTEASQDQPWPLTVVVQLGKQLAEVLVQT--VKMPSNLAQQQDTQKLIPVLYHVYS 600
Query: 403 TILKHPGQKTTKRYGVVECDPLVLEGLDRSAKHMLI---PYVPMLVPPKKWKGYNKGGYL 459
++ ++ G+++ P ++ + +A+ + VPML PP W + G +L
Sbjct: 601 F-------QSFRQIGILKPHPAFIQLQETAAERTMTFESAEVPMLCPPLPWTSPHSGAFL 653
Query: 460 FLPSYVMRT-HGSRKQQEALKSVTGNCMKKVFEALDTLGSTKWRVNKQVLSVLESIWVSG 518
P+ +MR+ G+ + Q L+ + +AL LG+ WRVN +VL ++ +I+ +
Sbjct: 654 LSPTKLMRSLEGTIQHQRLLEGCPPTELHGALDALTQLGNCAWRVNGRVLDLVLTIFNAK 713
Query: 519 G-------NIAGLVDR-NDVLIPEKPLSEDMTEVQKWKWSVRKAKKINQERHSQRCDTEL 570
G + A R + +P E TE+++ + + K+ +E HS R D
Sbjct: 714 GCPRLGVPSPASEAPRPSKHRLPANASPERKTELRR---ELARCLKVAREMHSLRTDALY 770
Query: 571 KLSVARRMKDEEGFYYPHNLDFRGRAYPMHPHLNHLSSDVCRGVLEFAEGRPLGKSGLRW 630
+LS+A+ ++ F+ PHN+DFRGR YP PH NHL SD+ R +LEFA+GRPLG GL W
Sbjct: 771 RLSLAQHLR-HRVFWLPHNMDFRGRTYPCPPHFNHLGSDLARALLEFAQGRPLGPHGLNW 829
Query: 631 LKIHLANLFSGGVEKLSHDGRLAFVENHLYEIFDSAENPINGSRWWLTAEDPFQCLAACI 690
LKIHL NL +G ++ S RLAF + + +I DSA+ P+ G +WW+ A++P+Q LA C+
Sbjct: 830 LKIHLVNL-TGLKKRESLQARLAFADEIMDDILDSADQPMTGRKWWMEADEPWQALACCM 888
Query: 691 NLSEALKSSSPHSVISHLPIHQDGSCNGLQHYAALGRNTLEAAAVNLVAGEKPADVYSEI 750
+++A+++ +P + +SH P+HQDGSCNGLQHYAALGR+++ AA+VNLV + P DVYS +
Sbjct: 889 EIAKAVRAPNPAAYVSHFPVHQDGSCNGLQHYAALGRDSVGAASVNLVPSDVPQDVYSSV 948
Query: 751 AVRVHEIMKRDSNKDPSKHPQALLAKILIDQVDRKLVKQTVMTSVYGVTFVGAREQIKRR 810
A +V ++D+ + +A +L + RK+VKQTVMT VYGVT G R QI++R
Sbjct: 949 AAQVEVFRRQDAERG------VQVATVLEGFISRKVVKQTVMTVVYGVTRYGGRLQIEKR 1002
Query: 811 LEEKGHITDDRQLFA--AACYAAKVTLTALGEIFEAARSIMGWLGDCAKVIASENQPVRW 868
L E ++D Q F A+ Y + +L E+F + R+I WL + A++IA V W
Sbjct: 1003 LRE---LSDFPQEFVWQASHYLVRQVFNSLQEMFSSTRAIQRWLTESARLIARSGLAVEW 1059
Query: 869 TTPLGLPVVQPYCKNERHLIRTSLQVLALQREGNLVK---IRKQRTAFPPNFVHSLDGSH 925
TPLG+P++QPY + + I +Q L G+ + KQ+ FPPNF+HSLD SH
Sbjct: 1060 VTPLGIPIIQPYHHDSKVSISGGIQSLTFCSSGDTNQKPNTLKQKNGFPPNFIHSLDSSH 1119
Query: 926 MMMTAVACRDAGLHFAGL 943
MM+TA+ C GL F +
Sbjct: 1120 MMLTALHCYRKGLTFVSV 1137
>gi|440472069|gb|ELQ40956.1| DNA-directed RNA polymerase [Magnaporthe oryzae Y34]
gi|440485237|gb|ELQ65213.1| DNA-directed RNA polymerase [Magnaporthe oryzae P131]
Length = 2046
Score = 405 bits (1041), Expect = e-110, Method: Compositional matrix adjust.
Identities = 255/755 (33%), Positives = 387/755 (51%), Gaps = 96/755 (12%)
Query: 259 VAVIVMHKMMGLVMAGHEDRCVQVVQAAVHIGMAIEQEIRIHSFLEKTKNYKRKKIIADT 318
A+ ++ M L M G D+ + + Q + + E++ + +++ KR+K++
Sbjct: 440 AALTILSVMSSLAMHG-VDKGITITQTIATVARSAEEDA---AAFQRSVRQKREKLMRKN 495
Query: 319 EEVLSKEK--ELLRKRVNSLIKSKRVMEAQKLLKNEETKPWGRDTQAKLGSRLVELLIET 376
+K E +S ++ + + Q + + W + +GS L+ L++
Sbjct: 496 GFARAKAAGAEPNAPGTDSTLRVTDIYDIQ----TDSAERWPASIRLTIGSVLLSSLVDV 551
Query: 377 AYV----QHPVNPADYSPPDVRPAFRHRFKTILKHPGQKTTKRYGVVECDPLVLEGLDRS 432
A + +HP S +PAF + K K+YG + + +++ + R
Sbjct: 552 ATITVTKEHPETRETISAE--QPAFARSIQ-------YKQGKKYGTLAPNKSLVQLMMRE 602
Query: 433 A-KHMLIPYVPMLVPPKKWKGYNKGGYLFLPSYVMRTHGSRKQQE--ALKSVTGNCMKKV 489
K L ++PM+ P W ++KGGYL P++++R K Q+ A ++ M++V
Sbjct: 603 PRKEFLARHLPMVCKPDPWTKFDKGGYLDQPTHLVRIKRGEKDQKLYAEAAMARGDMEQV 662
Query: 490 FEALDTLGSTKWRVNKQVLSVLESIWVSGGNIAGLVDRN-DVLIPEKPL-SEDMTEVQKW 547
+ LD LG W +NK VL V+ +W SG I G+ + D+ PE+P SED +W
Sbjct: 663 AKGLDALGRVGWNINKSVLDVVLQVWNSGEGIGGIPPLSVDIKAPEEPSPSEDPMVRFRW 722
Query: 548 KWSVRKAKKINQERHSQRCDTELKLSVARRMKDEEGFYYPHNLDFRGRAYPMHPHLNHLS 607
++K + I HSQRC T +L +A +D+ Y+PHN+DFRGRAYP+ +LNH+
Sbjct: 723 IRELKKVENIKASYHSQRCHTNFQLEIAHAYRDQT-LYFPHNVDFRGRAYPLPIYLNHIG 781
Query: 608 SDVCRGVLEFAEGRPLGKSGLRWLKIHLANLFSGGVEKLSHDGRLAFVENHLYEIFDSAE 667
+D+ R +L F + +PLG+ GL+WLK+HLAN++ G +K S R F +H+ +I DSA
Sbjct: 782 ADLSRALLLFDKAKPLGEDGLQWLKVHLANVY--GFDKASLSERAQFALDHIEDIVDSAT 839
Query: 668 NPINGSRWWLTAEDPFQCLAACINLSEALKSSSPHSVISHLPIHQDGSCNGLQHYAALGR 727
NP++G RWWL AEDP+QCLA C L A P LP+HQDG+CNGLQHYAALG
Sbjct: 840 NPLSGKRWWLGAEDPWQCLATCKELKAAFDMPDPAQYECRLPVHQDGTCNGLQHYAALGG 899
Query: 728 NTLEAAAVNLVAGEKPADVYSEIAVRVHEIMKRDSNKDPSKHPQALLAKILIDQVDRKLV 787
++ A VNL G++PADVY+ +A V E ++ D K +A L ++ RK+V
Sbjct: 900 DSWGARQVNLEPGDRPADVYTAVANLVSESIEEDIAKG------VKMAAALKGKIKRKVV 953
Query: 788 KQTVMTSVYGVTFVGAREQIKRRLEEKGHITDDRQLFAA---ACYAAKVTLTALGEIFEA 844
KQTVMT+VYGVTFVGA+ Q+K++L+ F A A Y A A+ +F
Sbjct: 954 KQTVMTNVYGVTFVGAKSQVKKQLDAFYPDIKKETGFDASHLAVYIAAKIFKAMSTMFRG 1013
Query: 845 ARSIMGWLGDCA------------------------------------------KVIASE 862
A I WLG+ +V+AS
Sbjct: 1014 AHDIQYWLGEIGSRVCRAVTPDQMVRLSEEMMRPQKQKEKALKTLATTGNPEYDQVLASY 1073
Query: 863 NQP------------VRWTTPLGLPVVQPYCKNERHLIRTSLQ--VLALQREGNLVKIRK 908
N+ + WTTPL +PVVQPY K +I+T+ Q +L + + V +K
Sbjct: 1074 NKASLGDLLSQFRSTIIWTTPLRMPVVQPYRKAAVKIIKTNFQDLILRVSDPWDPVHKQK 1133
Query: 909 QRTAFPPNFVHSLDGSHMMMTAVACRDAGLHFAGL 943
Q AFPPNFVHSLD SHMM++A+ C GL FA +
Sbjct: 1134 QLQAFPPNFVHSLDASHMMLSALECDSNGLTFAAV 1168
>gi|387541882|gb|AFJ71568.1| DNA-directed RNA polymerase, mitochondrial precursor [Macaca mulatta]
Length = 1228
Score = 405 bits (1040), Expect = e-110, Method: Compositional matrix adjust.
Identities = 225/604 (37%), Positives = 347/604 (57%), Gaps = 34/604 (5%)
Query: 355 KPWGRDTQAKLGSRLVELLIETAYVQHPVNPADYSPPDVRPAFRHRFKTILKHPGQKTTK 414
+PW Q +LG +L E+L++ + ++ + + P H + + +
Sbjct: 558 QPWPLPVQMELGKQLAEMLVQATRMPSSLD-NRHGSSRLVPVLYHVYSF-------RNVQ 609
Query: 415 RYGVVECDPLVLEGLDRSAKHMLI---PYVPMLVPPKKWKGYNKGGYLFLPSYVMRT-HG 470
+ G+++ P ++ L+ +A+ L VPML PP W + G +L P+ +MRT G
Sbjct: 610 QIGILKPHPAYVQLLETAAEPTLTFEAVDVPMLCPPLPWTSPHTGAFLLSPTKLMRTVEG 669
Query: 471 SRKQQEALKSVTGNCMKKVFEALDTLGSTKWRVNKQVLSVLESIWVSGGNIAGLVDRNDV 530
+ + QE L++ + +AL LG+ WRVN +VL ++ ++ + G V
Sbjct: 670 ATQHQELLETCPPTALHGALDALTQLGNCAWRVNGRVLDLVLQLFQAKGCPKLGVPAPAS 729
Query: 531 LIPEK-----PLSEDMTEVQKWKWSVRKAKKINQERHSQRCDTELKLSVARRMKDEEGFY 585
P+ P S + + + + +K+ +E HS R + +LS+A+ ++ F+
Sbjct: 730 EAPQPAEAHVPQSAAPARKAELRRELARCQKVAREMHSLRAEALYRLSLAQHLRGRV-FW 788
Query: 586 YPHNLDFRGRAYPMHPHLNHLSSDVCRGVLEFAEGRPLGKSGLRWLKIHLANLFSGGVEK 645
PHN+DFRGR YP PH NHL SDV R +LEFA+GRPLG GL WLKIHL NL +G ++
Sbjct: 789 LPHNMDFRGRTYPCPPHFNHLGSDVARALLEFAQGRPLGPHGLDWLKIHLVNL-TGFKKR 847
Query: 646 LSHDGRLAFVENHLYEIFDSAENPINGSRWWLTAEDPFQCLAACINLSEALKSSSPHSVI 705
RLAF E + +I DSA+ P+ G +WW+ AE+P+Q LA C+ ++ A++ S P + +
Sbjct: 848 EPLRKRLAFAEEVMDDILDSADQPMTGRKWWMGAEEPWQTLACCMEVANAVRCSDPAAYV 907
Query: 706 SHLPIHQDGSCNGLQHYAALGRNTLEAAAVNLVAGEKPADVYSEIAVRVHEIMKRDSNKD 765
SHLP+HQDGSCNGLQHYAALGR+++ AA+VNL + P DVYS +A +V ++D+ +
Sbjct: 908 SHLPVHQDGSCNGLQHYAALGRDSVGAASVNLEPSDVPQDVYSGVAAQVEVFRRQDAQRG 967
Query: 766 PSKHPQALLAKILIDQVDRKLVKQTVMTSVYGVTFVGAREQIKRRLEEKGHITDDRQLFA 825
+A++L + RK+VKQTVMT VYGVT G R QI++RL E +TD Q F
Sbjct: 968 ------TRVAQMLEGFITRKVVKQTVMTVVYGVTRYGGRLQIEKRLRE---LTDFPQEFV 1018
Query: 826 --AACYAAKVTLTALGEIFEAARSIMGWLGDCAKVIASENQPVRWTTPLGLPVVQPY-CK 882
A+ Y + +L E+F R+I WL + A++I+ V W TPLG+P++QPY +
Sbjct: 1019 WEASHYLVRQVFKSLQEMFSGTRAIQHWLTESARLISHMGSVVEWVTPLGIPIIQPYRLE 1078
Query: 883 NERHLIRTSLQVLALQREGNLVK---IRKQRTAFPPNFVHSLDGSHMMMTAVACRDAGLH 939
++ +R +Q + G++ + RKQ+ FPPNF+HSLD SHMM+TA+ C GL
Sbjct: 1079 HKVKQVRGGIQSITYIHNGDISQKPNTRKQKNGFPPNFIHSLDSSHMMLTALHCYRKGLT 1138
Query: 940 FAGL 943
F +
Sbjct: 1139 FVSV 1142
>gi|299740865|ref|XP_001834061.2| mitochondrial RNA polymerase [Coprinopsis cinerea okayama7#130]
gi|298404445|gb|EAU87753.2| mitochondrial RNA polymerase [Coprinopsis cinerea okayama7#130]
Length = 1341
Score = 404 bits (1039), Expect = e-109, Method: Compositional matrix adjust.
Identities = 251/702 (35%), Positives = 399/702 (56%), Gaps = 60/702 (8%)
Query: 192 RMVDEYKELEAKMIEKRLAPNLPHIKGLFLGW-------FGPLSEAIEREQKMQRTK-KQ 243
RM +++ L+ I+ R + ++ + GW L IE+E+ + + K
Sbjct: 361 RMKAQHETLDQLGIDTRFRDKV--LQEMMYGWHEKLKKRVAELVSQIEKEEAAGKYRLKP 418
Query: 244 KAAYAPHIELLPADKVAVIVMHKMMGLVMAGHEDRCVQVVQAAVHIGMAIEQEIRIHSFL 303
KA AP++ L+ +++++I + + M L +G ++ +A V IG A+E E
Sbjct: 419 KAELAPYLALVQPERLSMITILEAMRLCGSGGVASGMKSTRALVSIGKAVEMEY------ 472
Query: 304 EKTKNYKRKKII------ADTEEVLSKEKELLRKRVNSLIKSKRVMEAQKLLKNEE-TKP 356
K + ++ +I+ DT++V S S + +R+ A+++ E T P
Sbjct: 473 -KARVCRKNRIVIPDVSRPDTQDVFSSLG-------YSNLHERRLAAAKQMTAGESWTAP 524
Query: 357 WGRDTQAKLGSRLVELLIETAYVQHPVNPADYSPPDV----RPAFRHRFKTILKHPGQKT 412
W + T+A++G+ L+E+L++ A V P + +V PAF H ++ + +
Sbjct: 525 WSQTTRAQIGALLMEVLMQVATV--PQTAVNEETGEVLTEEHPAFFHSYEYM------RG 576
Query: 413 TKRYGVVECDPLVLEGLDRSA-KHMLIP-YVPMLVPPKKWKGYNKGGYLFLPSYVMRTHG 470
TK GV++ + V E + + K + P ++PML PPK W N+GGYL+ + +MR
Sbjct: 577 TK-LGVIKVNHAVSERIAKDVLKGTIHPRHLPMLHPPKPWVRANEGGYLYTKTPLMRYKE 635
Query: 471 SRKQQEAL-KSVTGNCMKKVFEALDTLGSTKWRVNKQVLSVLESIWVSGGNIAGLVDRND 529
+Q++ L +++ M+ V L+ LG T W++NK++ V+ +IW SG + L
Sbjct: 636 CVEQEKYLHEAIRKGNMEAVMAGLNVLGRTPWKINKKIFDVVLTIWNSGEGVGKLPPAKL 695
Query: 530 VLIPEKPLSEDMTEVQKWKWSVRKAKKINQE---RHSQRCDTELKLSVARRMKDEEGFYY 586
+P E +V+ ++ K+ +Q HS+RC T K+ +AR DE Y+
Sbjct: 696 DEPEPQPPPEGENDVRARAIYLQHHKQWSQNVANNHSERCSTNYKIEIARAFLDET-IYF 754
Query: 587 PHNLDFRGRAYPMHPHLNHLSSDVCRGVLEFAEGRPLGKSGLRWLKIHLANLFSGGVEKL 646
PHNLDFRGRAYP+ PHLNH+ D+ RG+L F E +PLG+ GLRW+KIHLANL+ G +K
Sbjct: 755 PHNLDFRGRAYPLPPHLNHIGDDLSRGLLLFQEAKPLGERGLRWMKIHLANLY--GFDKA 812
Query: 647 SHDGRLAFVENHLYEIFDSAENPINGSRWWLTAEDPFQCLAACINLSEALKSSSPHSVIS 706
D R+ +V + L +I DSA+NP+ G WW A+DPFQCLA C+ L+EAL+S P + S
Sbjct: 813 DFDERVHWVHDRLDDIKDSAKNPLTGRGWWKKADDPFQCLATCMELTEALESPDPLAYKS 872
Query: 707 HLPIHQDGSCNGLQHYAALGRNTLEAAAVNLVAGEKPADVYSEIAVRVHEIMKRDSNKDP 766
LP+HQDG+CNGLQHYAA+G + A VNL A ++P+DVY+ + +V +++ D+ K
Sbjct: 873 CLPVHQDGTCNGLQHYAAMGGDAQGAQQVNLAASDRPSDVYTFVGNKVDKLVNEDAAKGD 932
Query: 767 SKHPQALLAKILIDQVDRKLVKQTVMTSVYGVTFVGAREQIKRRLEEKGHITDDRQLFAA 826
LA++L ++ RK+VKQTVMT+VYGVTFVGAR+QI+ +L ++G I + + +
Sbjct: 933 R------LAQLLQGKITRKVVKQTVMTTVYGVTFVGARDQIEGQLIDRGDIPLE-ECWNV 985
Query: 827 ACYAAKVTLTALGEIFEAARSIMGWLGDCAKVIASENQPVRW 868
A Y AK L +G+ F ARSI WL CA++I+ P R+
Sbjct: 986 AGYLAKKVLHCIGDTFHGARSIQNWLNLCARLISKSVSPDRF 1027
Score = 84.7 bits (208), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 45/93 (48%), Positives = 58/93 (62%), Gaps = 3/93 (3%)
Query: 854 DCAKVIASENQ-PVRWTTPLGLPVVQPYCKNERHLIRTSLQVLALQREG--NLVKIRKQR 910
D AK+I E V WTT LGLPVVQPY K R I T++Q + + N V KQ
Sbjct: 1075 DVAKLIKKEQMTSVIWTTALGLPVVQPYRKTSRKQIMTNIQSVFISDPNIPNEVNAVKQA 1134
Query: 911 TAFPPNFVHSLDGSHMMMTAVACRDAGLHFAGL 943
+AFPPNFVHSLD +HM+++A+ C + L FA +
Sbjct: 1135 SAFPPNFVHSLDATHMLLSALECNNQKLTFASV 1167
>gi|354480822|ref|XP_003502602.1| PREDICTED: DNA-directed RNA polymerase, mitochondrial [Cricetulus
griseus]
Length = 1202
Score = 404 bits (1039), Expect = e-109, Method: Compositional matrix adjust.
Identities = 230/607 (37%), Positives = 352/607 (57%), Gaps = 29/607 (4%)
Query: 349 LKNEETKPWGRDTQAKLGSRLVELLIETAYVQHPVNPADYSPPDVRPAFRHRFKTILKHP 408
L+ +PW LG +L E+L++ VQ P N S P A RH +
Sbjct: 527 LETPMQQPWSLTVLLHLGKQLAEMLVQA--VQMPRN---LSTPQ---ASRHLIPVLYHVY 578
Query: 409 GQKTTKRYGVVECDPLVLEGLDRSAKHMLI---PYVPMLVPPKKWKGYNKGGYLFLPSYV 465
++ ++ G+++ P + L+ +A+ LI VPML PP W + G YL + +
Sbjct: 579 SFRSYRQIGILKPHPAFSKLLETAAEPTLILETTEVPMLCPPLPWTTPHTGAYLLSSTKL 638
Query: 466 MR-THGSRKQQEALKSVTGNCMKKVFEALDTLGSTKWRVNKQVLSVLESIWVSGG--NIA 522
MR T G+ + Q L+ + +AL LG+ WRVN ++L ++ I+ G +
Sbjct: 639 MRATEGTTQHQHLLERCAPAQLHGALDALTQLGNCAWRVNGRLLDLVLQIFRDKGCTRLG 698
Query: 523 GLVDRNDVLIPEK-PLSEDMTEVQK--WKWSVRKAKKINQERHSQRCDTELKLSVARRMK 579
R++ P + L T + K + + + KI +E HS R + +LS+A+ ++
Sbjct: 699 VPPPRSEAPQPAQLRLPPGATPLHKAELRKELSRCLKIAREMHSLRIEALYRLSLAQHLR 758
Query: 580 DEEGFYYPHNLDFRGRAYPMHPHLNHLSSDVCRGVLEFAEGRPLGKSGLRWLKIHLANLF 639
+ F+ PHN+DFRGR YP P+ NHL SD+ R +LEFAEGRPLG GL W+KIHL NL
Sbjct: 759 NRV-FWLPHNMDFRGRTYPCPPYFNHLGSDLARALLEFAEGRPLGPRGLDWIKIHLVNL- 816
Query: 640 SGGVEKLSHDGRLAFVENHLYEIFDSAENPINGSRWWLTAEDPFQCLAACINLSEALKSS 699
+G ++ S RL F + + EI DSA+NP+ G +WW+ A++P+Q LA CI ++ A++S
Sbjct: 817 TGLRKRDSLRMRLRFADEVMEEILDSADNPMTGRKWWMEADEPWQTLACCIEVARAVRSP 876
Query: 700 SPHSVISHLPIHQDGSCNGLQHYAALGRNTLEAAAVNLVAGEKPADVYSEIAVRVHEIMK 759
+ +SHLP+HQDGSCNGLQHYAALGR++ AA+VNL+ + P DVY E+A +V E+ +
Sbjct: 877 DAAAYVSHLPVHQDGSCNGLQHYAALGRDSAGAASVNLMPSDLPQDVYREVAAQVEELRQ 936
Query: 760 RDSNKDPSKHPQALLAKILIDQVDRKLVKQTVMTSVYGVTFVGAREQIKRRLEEKGHITD 819
RD+ KD + +A +L + RK+VKQTVMT VYGVT G R QI++RL E +
Sbjct: 937 RDA-KDGLQ-----VAHVLKGFITRKVVKQTVMTVVYGVTRYGGRLQIEKRLRELSNFPQ 990
Query: 820 DRQLFAAACYAAKVTLTALGEIFEAARSIMGWLGDCAKVIASENQPVRWTTPLGLPVVQP 879
+ ++ A+ Y ++ +L E+F + R+I WL + A +I+ PV W TPLG+PV+QP
Sbjct: 991 EF-VWEASHYLVRLVFKSLQEMFSSTRAIQHWLTESANLISHSGWPVEWVTPLGIPVIQP 1049
Query: 880 YCKNERHLIRTSLQVLALQREGNLVK---IRKQRTAFPPNFVHSLDGSHMMMTAVACRDA 936
Y + + ++ +Q + + ++ + KQ+ FPPNF+HSLD +HMM+TA+ C
Sbjct: 1050 YHREAKVQVKGGIQSITMTSSMDITQKPNTLKQKNGFPPNFIHSLDSAHMMLTALHCYRK 1109
Query: 937 GLHFAGL 943
GL F +
Sbjct: 1110 GLTFVSV 1116
>gi|47215657|emb|CAG01374.1| unnamed protein product [Tetraodon nigroviridis]
Length = 810
Score = 404 bits (1037), Expect = e-109, Method: Compositional matrix adjust.
Identities = 230/610 (37%), Positives = 342/610 (56%), Gaps = 52/610 (8%)
Query: 357 WGRDTQAKLGSRLVELLIETAYVQHPVNPADYSPPDVRPAFRHRFKTILKHP-GQKTTKR 415
W +LG+ +V+L+++ + + + PA + +L H ++T++
Sbjct: 143 WPYIVTLELGTYMVDLMVKNLKINSDI---------LNPAHDRKLIPVLYHMYAFRSTRQ 193
Query: 416 YGVVECDPLVLEGLDRSAKHMLIPY----VPMLVPPKKWKGYNKGGYLFLPSYVMRTHGS 471
G ++ P +L + + A + + +PML PP W G YL P+ +MRT
Sbjct: 194 IGFIKPHP-ILSQMQQEAMETKLTFDSYVMPMLCPPVPWTSVRFGAYLLTPTKLMRTVEG 252
Query: 472 RKQQEALKSVTGNCMKKVFEALDTLGSTKWRVNKQVLSVLESIWVSGGNIAGLVDRNDVL 531
Q + L N + V ++L+ LG+ W++NK VL ++ SI+ G+ ++ D+
Sbjct: 253 AMQHDVLLEKCQN-LHPVLDSLNQLGNCAWKINKPVLDIIISIFNDRGS-----EKLDIP 306
Query: 532 IPE---------KPLSEDMTEVQK--WKWSVRKAKKINQERHSQRCDTELKLSVARRMKD 580
P P + T +K K V AKK E HS R D KLS+A M+D
Sbjct: 307 PPLTEAPRIPHFNPHDPNYTASEKALMKRQVMSAKKKYSEMHSLRMDALYKLSIAHHMRD 366
Query: 581 EEGFYYPHNLDFRGRAYPMHPHLNHLSSDVCRGVLEFAEGRPLGKSGLRWLKIHLANLFS 640
E F++PHN+DFRGR YP P+ NHL SDV R L FAEG+PLG GL WLKIHL NL +
Sbjct: 367 EI-FWFPHNMDFRGRTYPCPPYFNHLGSDVTRATLLFAEGKPLGAKGLDWLKIHLVNL-T 424
Query: 641 GGVEKLSHDGRLAFVENHLYEIFDSAENPINGSRWWLTAEDPFQCLAACINLSEALKSSS 700
G ++ S GRL + + + +I DSA+NP+ G +WW+ A++P+Q L+ C+ ++ A+++
Sbjct: 425 GLKKRSSLQGRLEYADTIMEDILDSADNPLKGKKWWMNADEPWQALSCCMEIANAVRAPD 484
Query: 701 PHSVISHLPIHQDGSCNGLQHYAALGRNTLEAAAVNLVAGEKPADVYSEIAVRVHEIMKR 760
ISH P+HQDGSCNGLQHYAALGR+ + A +VNL+ E P DVYS +A +V E+ R
Sbjct: 485 STQFISHFPVHQDGSCNGLQHYAALGRDVIGATSVNLMPCEVPQDVYSGVAQQVEELRAR 544
Query: 761 DSNKDPSKHPQALLAKILIDQVDRKLVKQTVMTSVYGVTFVGAREQIKRRLEEKGHITDD 820
D+ +A++L + RK+VKQTVMT VYGVT G R QI++RL+E +
Sbjct: 545 DAKSGLK------IAQVLEGFISRKVVKQTVMTVVYGVTRYGGRLQIEKRLKEIDEFPKE 598
Query: 821 RQLFAAACYAAKVTLTALGEIFEAARSIMGWLGDCAKVIASENQPVRWTTPLGLPVVQPY 880
++ A+ Y ++ + L E+F R I WL + A++I+ V W TPLGLP++QPY
Sbjct: 599 -HVWDASHYLVRLVFSGLKEMFTGTREIQDWLTESARLISKSGHTVEWVTPLGLPIIQPY 657
Query: 881 CKNER----HLIRTSLQV---LALQREGNLVKIRKQRTAFPPNFVHSLDGSHMMMTAVAC 933
+ H+ SL V A+ R + KQ+ AFPPNF+HSLD +HMM+TA+ C
Sbjct: 658 HRTRNQVVSHVWGCSLPVHCSKAVLRPDTV----KQKNAFPPNFIHSLDSTHMMLTALHC 713
Query: 934 RDAGLHFAGL 943
AGL F +
Sbjct: 714 YSAGLTFVSV 723
>gi|451856581|gb|EMD69872.1| hypothetical protein COCSADRAFT_32528 [Cochliobolus sativus ND90Pr]
Length = 1438
Score = 404 bits (1037), Expect = e-109, Method: Compositional matrix adjust.
Identities = 269/849 (31%), Positives = 407/849 (47%), Gaps = 115/849 (13%)
Query: 181 RQVKQETEAWERMVDEYKELEAKMIEKRL--APNLPHIKGLFLGWFGPL----------S 228
RQ++ E + E V +K + KM E + N I+ + GW+ L +
Sbjct: 380 RQIQMEQDGMEAAVKRWKAEDEKMQEIGIHGVMNTKSIQAMMYGWYTALVPLFKKRIEHA 439
Query: 229 EAIEREQKMQRTKKQKAAYAPHIELLPADKVAVIVMHKMM--GLVMAGHEDRCVQVVQAA 286
+ + E T+ Y +E +K+A I + + + G + +++ +
Sbjct: 440 KQVLLEPPKATTRDDAHEYGVWLERCKPEKLAAITVARSTQSAVKGKGEDSSALKIAALS 499
Query: 287 VHIGMAIEQ------EIRIHSFLEKTKNYKRKKII---ADTEEVLSKEKELLRKRVNSLI 337
+ +G IE + R +FL+K + R ++ A + S EK+ + N L
Sbjct: 500 IAVGNDIEDYLNAETQTRRDAFLKKQRKQTRLNLVSTLAKSGSTSSTEKQPQSAKSNMLE 559
Query: 338 KSKRVMEAQKLLKNEETKPWGRDTQAKLGSRLVELLIETA-YVQHPVNP-ADYSPPDVRP 395
K M + KLG+ +E L+++A V +P S
Sbjct: 560 FEKVHMPLS--------------ARTKLGAMCIEQLLQSATLVVTAKDPRTGKSVSRSMA 605
Query: 396 AFRHRFKTILKHPGQKTTKRYG-VVECDPLVLEGLDRSAKHMLIPYVPMLVPPKKWKGYN 454
AF H+ G K+ G +V L+ + S + +PM+V PK W +
Sbjct: 606 AFHHQV-------GFHQGKKLGFLVPHHELMAKMRTDSVHSIQTVRLPMVVEPKPWSSFE 658
Query: 455 KGGYLFLPSYVMRTHGSRKQQEALK--SVTGNCMKKVFEALDTLGSTKWRVNKQVLSVLE 512
GGY +P ++R G Q A ++ M KV LD LG W++N V V+
Sbjct: 659 DGGYYTVPQKIVRQKGGDTAQRAYAQLAIENGDMSKVMAGLDVLGKVPWQINAPVYDVMA 718
Query: 513 SIWVSGGNIAGLVDRNDVLI---PEKPLSE-DMTEVQKWKWSVRKAKKINQERHSQRCDT 568
W +G +I LV + + P +P +E E +W ++++ + HSQRC
Sbjct: 719 RAWNAGESIGSLVGEDAITSLKRPSEPSAEASFQERSRWNKALQEYEDTIGGLHSQRCFQ 778
Query: 569 ELKLSVARRMKDEEGFYYPHNLDFRGRAYPMHPHLNHLSSDVCRGVLEFAEGRPLGKSGL 628
+L AR +E+ Y+PH++DFRGRAYP+ P LNH+ SD+ RG+L+FA G+ LG GL
Sbjct: 779 NFQLETARAYVNEKKIYFPHSVDFRGRAYPIPPILNHIGSDLSRGLLKFAHGKELGAVGL 838
Query: 629 RWLKIHLANLFSGGVEKLSHDGRLAFVENHLYEIFDSAENPINGSRWWLTAEDPFQCLAA 688
+WLKIHLANL+ G +K S R F +H+ EI DSA P+ G RWW AEDP+QCLA
Sbjct: 839 QWLKIHLANLY--GFDKASLREREQFAMDHMSEICDSASQPLEGQRWWTKAEDPWQCLAC 896
Query: 689 CINLSEALKSSSPHSVISHLPIHQDGSCNGLQHYAALGRNTLEAAAVNLVAGEKPADVYS 748
CI L A P +S LP+HQDG+CNGLQHYAALG + A VNL ++P D+Y+
Sbjct: 897 CIELKNAFDLPDPTRFVSQLPVHQDGTCNGLQHYAALGGDHAGARQVNLEPSDRPQDIYT 956
Query: 749 EIAVRVHEIMKRDSNKDPSKHPQALLAKILIDQVDRKLVKQTVMTSVYGVTFVGAREQIK 808
+A V E++ +D++K LA + + RK+VK+TVMT+VYGVTF+GA++Q++
Sbjct: 957 GVAELVKEMVAKDASKG------VPLANFIDGHISRKVVKRTVMTNVYGVTFMGAKQQVQ 1010
Query: 809 ---RRLEEKGHITDD-RQLFAAACYAAKVTLTALGEIFEAARSIMGWLGDCAKVIASE-- 862
R L TD + L A Y A+ ALG+IF A+ I WLG+C I +
Sbjct: 1011 DELRSLFPHFQPTDKVKSLGVVALYVAQRIFEALGKIFNGAQEIQYWLGECGDRITTSIS 1070
Query: 863 ----------------------------------------------NQPVRWTTPLGLPV 876
+ WT+PL +P+
Sbjct: 1071 AEQIKRIQERFEGMNPAAALYDPKFAAPKKVTTLQINKLNKNMEKFKTSIIWTSPLKMPI 1130
Query: 877 VQPYCKNERHLIRTSLQVLALQREG--NLVKIRKQRTAFPPNFVHSLDGSHMMMTAVACR 934
VQPY K+ IRT +Q + + ++ + V RKQ AFPPNF+HSLD +HM ++A+
Sbjct: 1131 VQPYRKDTVQKIRTKIQDITVSKKSQQDEVDKRKQLQAFPPNFIHSLDATHMTLSALKAN 1190
Query: 935 DAGLHFAGL 943
+ GL FA +
Sbjct: 1191 EMGLDFAAV 1199
>gi|451993672|gb|EMD86144.1| hypothetical protein COCHEDRAFT_1198114 [Cochliobolus heterostrophus
C5]
Length = 1432
Score = 403 bits (1036), Expect = e-109, Method: Compositional matrix adjust.
Identities = 265/846 (31%), Positives = 408/846 (48%), Gaps = 109/846 (12%)
Query: 181 RQVKQETEAWERMVDEYKELEAKMIEKRLAP--NLPHIKGLFLGWFGPL----SEAIERE 234
RQ++ E + E V +K + K+ E + N I+ + GW+ L + IE
Sbjct: 375 RQIQMEQDGVEAAVKRWKAEDEKLQEIGIHGIMNKKPIQAIMYGWYTALVPLFKKRIEDA 434
Query: 235 QKM------QRTKKQKAAYAPHIELLPADKVAVIVMHKMMGLVMAG--HEDRCVQVVQAA 286
+K+ T+ Y +E +K+A I + + + G + +++ +
Sbjct: 435 KKVLLEPPKATTRDDAHEYGVWLERCTPEKLAAITVARATSSAVKGKGEDSSALKIASLS 494
Query: 287 VHIGMAI------EQEIRIHSFLEKTKNYKRKKIIADTEEVLSKEKELLRKRVNSLIKSK 340
+ +G I E + R +FL+K + R +++ L K V S
Sbjct: 495 IAVGNDIQDYLNAETQTRRDAFLKKQRKQTRLNLVS-----------TLAKSVASSSAET 543
Query: 341 RVMEAQKLLKNEETKPWGRDTQAKLGSRLVELLIETA-YVQHPVNP-ADYSPPDVRPAFR 398
A+ + E + KLG+ +E L+++A V +P S AF
Sbjct: 544 ETQSAKSSIFEFEKVDMPLSARTKLGAMCIEHLLQSATLVVTAKDPRTGKSVSRSMAAFH 603
Query: 399 HRFKTILKHPGQKTTKRYGVVECDPLVLEGLDRSAKHML-IPYVPMLVPPKKWKGYNKGG 457
H+ G K+ G + +++ + + H + +PM+V PK W + GG
Sbjct: 604 HQI-------GFHQGKKLGFLVPHHELMDKMRTDSVHSIQTVRLPMVVEPKPWSSFEDGG 656
Query: 458 YLFLPSYVMRTHGSRKQQEALK--SVTGNCMKKVFEALDTLGSTKWRVNKQVLSVLESIW 515
Y +P ++R G Q A ++ M KV LD LG W++N V V+ W
Sbjct: 657 YYTVPQKIVRQKGGDSAQRAYAQLAIENGDMFKVMAGLDVLGKVPWQINAPVFDVMARAW 716
Query: 516 VSGGNIAGLVDRNDVLI---PEKPLSE-DMTEVQKWKWSVRKAKKINQERHSQRCDTELK 571
+G +I LV + + P +P +E E +W ++++ + HSQRC +
Sbjct: 717 NAGESIGSLVGEDAITSLKRPSEPSAEASFQERSRWNKALQEYEDTIGGLHSQRCFQNFQ 776
Query: 572 LSVARRMKDEEGFYYPHNLDFRGRAYPMHPHLNHLSSDVCRGVLEFAEGRPLGKSGLRWL 631
L AR +E+ Y+PH++DFRGRAYP+ P LNH+ SD+ RG+L+FA G+ LG GL+WL
Sbjct: 777 LETARAYANEKKIYFPHSVDFRGRAYPIPPILNHIGSDLSRGLLKFAHGKELGTVGLQWL 836
Query: 632 KIHLANLFSGGVEKLSHDGRLAFVENHLYEIFDSAENPINGSRWWLTAEDPFQCLAACIN 691
KIHLANL+ G +K S R F +H+ EI DSA P+ G RWW AEDP+QCLA CI
Sbjct: 837 KIHLANLY--GFDKASLREREQFTMDHMSEICDSASQPLEGQRWWTKAEDPWQCLACCIE 894
Query: 692 LSEALKSSSPHSVISHLPIHQDGSCNGLQHYAALGRNTLEAAAVNLVAGEKPADVYSEIA 751
L A P +S LP+HQDG+CNGLQHYAALG + A VNL ++P D+Y+ +A
Sbjct: 895 LKNAFDLPDPTRFVSQLPVHQDGTCNGLQHYAALGGDHAGARQVNLEPSDRPQDIYTGVA 954
Query: 752 VRVHEIMKRDSNKDPSKHPQALLAKILIDQVDRKLVKQTVMTSVYGVTFVGAREQIK--- 808
V E++ +D+NK +A + + RK+VK+TVMT+VYGVTF+GA++Q++
Sbjct: 955 ELVQEMVAKDANKG------LPVANFIDGHISRKVVKRTVMTNVYGVTFIGAKQQVQDEL 1008
Query: 809 RRLEEKGHITDD-RQLFAAACYAAKVTLTALGEIFEAARSIMGWLGDCAKVIASE----- 862
R L T+ + L A Y A+ ALG+IF A+ I WLG+C I +
Sbjct: 1009 RNLFPHFQPTEKVKSLGVVALYVAQRIFEALGKIFNGAQEIQYWLGECGDRITTSISAEQ 1068
Query: 863 -------------------------------------------NQPVRWTTPLGLPVVQP 879
+ WT+PL +P+VQP
Sbjct: 1069 IKRIQERFEGMDPAGAVYDPKFAAPKKVTALQINKLNKNMEKFKTSIIWTSPLKMPIVQP 1128
Query: 880 YCKNERHLIRTSLQVLALQREG--NLVKIRKQRTAFPPNFVHSLDGSHMMMTAVACRDAG 937
Y K+ IRT +Q + + ++ + V RKQ AFPPNF+HSLD +HM ++A+ + G
Sbjct: 1129 YRKDSVQKIRTKIQDITITKKSQQDEVDKRKQLQAFPPNFIHSLDATHMTLSALKASEMG 1188
Query: 938 LHFAGL 943
L FA +
Sbjct: 1189 LDFAAV 1194
>gi|281332113|ref|NP_766139.2| DNA-directed RNA polymerase, mitochondrial precursor [Mus musculus]
gi|50401559|sp|Q8BKF1.1|RPOM_MOUSE RecName: Full=DNA-directed RNA polymerase, mitochondrial;
Short=MtRPOL; Flags: Precursor
gi|26343407|dbj|BAC35360.1| unnamed protein product [Mus musculus]
gi|74185846|dbj|BAE32793.1| unnamed protein product [Mus musculus]
gi|84570033|gb|AAI10698.1| Polymerase (RNA) mitochondrial (DNA directed) [Mus musculus]
gi|109734947|gb|AAI17941.1| Polymerase (RNA) mitochondrial (DNA directed) [Mus musculus]
gi|148699719|gb|EDL31666.1| polymerase (RNA) mitochondrial (DNA directed), isoform CRA_a [Mus
musculus]
Length = 1207
Score = 403 bits (1036), Expect = e-109, Method: Compositional matrix adjust.
Identities = 234/609 (38%), Positives = 345/609 (56%), Gaps = 33/609 (5%)
Query: 349 LKNEETKPWGRDTQAKLGSRLVELLIETAYVQHPVNPADYSPPDVRPAFRHRFKTILKHP 408
L+ +PW +LG +L ELL++ VQ P + A R + +
Sbjct: 530 LEAPAQQPWSVPVLLQLGKQLAELLVQA--VQMPRSLA------ARQGAQRSIPVLYHVY 581
Query: 409 GQKTTKRYGVVECDPLVLEGLDRSAKHMLI---PYVPMLVPPKKWKGYNKGGYLFLPSYV 465
++ ++ G+++ P L+ +A+ L VPML PP W + G YL + +
Sbjct: 582 SFRSYRQVGILKPHPAFTHLLETAAEPTLTFETTEVPMLCPPLPWTSLHSGAYLLSSTKL 641
Query: 466 MR-THGSRKQQEALKSVTGNCMKKVFEALDTLGSTKWRVNKQVLSVLESIWVSGGNIAGL 524
MR T G+ + Q L+ + +AL LG+ WRVN +L ++ I+ G +
Sbjct: 642 MRATEGTTQHQRLLEQCPPAQLHGPLDALTQLGNCAWRVNGHLLDLVLQIFRDKGCMPLG 701
Query: 525 VD--RNDVLIPEK-PLSEDMTEVQK--WKWSVRKAKKINQERHSQRCDTELKLSVARRMK 579
V R++ P + L T V K + + + K+ +E HS R + +LS+A+ ++
Sbjct: 702 VPPPRSEAPRPARYQLPPGSTPVHKSELRKELARCLKVAREMHSLRSEALYRLSLAQHLR 761
Query: 580 DEEGFYYPHNLDFRGRAYPMHPHLNHLSSDVCRGVLEFAEGRPLGKSGLRWLKIHLANLF 639
F+ PHN+DFRGR YP PH NHL SD+ R +LEFAEGRPLG GL WLKIHL NL
Sbjct: 762 -HRVFWLPHNMDFRGRTYPCPPHFNHLGSDLARALLEFAEGRPLGPRGLDWLKIHLINL- 819
Query: 640 SGGVEKLSHDGRLAFVENHLYEIFDSAENPINGSRWWLTAEDPFQCLAACINLSEALKSS 699
+G + S RLAF + + EI DSA+NP+ G +WW+ A++P+Q LA C+ ++ A++S
Sbjct: 820 TGLKKGDSLRMRLAFADEVMEEILDSADNPLTGRKWWMEADEPWQTLACCMEVAHAVRSP 879
Query: 700 SPHSVISHLPIHQDGSCNGLQHYAALGRNTLEAAAVNLVAGEKPADVYSEIAVRVHEIMK 759
P + ISHLP+HQDGSCNGLQHYAALGR+++ AA+VNL + P DVY E+A +V E +
Sbjct: 880 DPAAYISHLPVHQDGSCNGLQHYAALGRDSVGAASVNLTPSDLPQDVYREVATQVEEFRQ 939
Query: 760 RDSNKDPSKHPQALLAKILIDQVDRKLVKQTVMTSVYGVTFVGAREQIKRRLEEKGHITD 819
+D+ + +A++L + RK+VKQTVMT VYGVT G R QI++RL E ++D
Sbjct: 940 QDAKEG------LRVAQVLEGFISRKVVKQTVMTVVYGVTRYGGRLQIEKRLRE---LSD 990
Query: 820 DRQLFA--AACYAAKVTLTALGEIFEAARSIMGWLGDCAKVIASENQPVRWTTPLGLPVV 877
Q F A+ Y + +L E+F + R+I WL + A +I+ PV W TPLG+P++
Sbjct: 991 FPQEFVWEASHYLVRQVFKSLQEMFTSTRAIQHWLTESANLISHAGWPVEWVTPLGIPII 1050
Query: 878 QPYCKNERHLIRTSLQVLALQR---EGNLVKIRKQRTAFPPNFVHSLDGSHMMMTAVACR 934
QPY + + ++ LQ + L E KQ+ FPPNF+HSLD SHMM+TA+ C
Sbjct: 1051 QPYHRESKVQVKGGLQSITLTSSVDESQKPNTLKQKNGFPPNFIHSLDSSHMMLTALHCY 1110
Query: 935 DAGLHFAGL 943
GL F +
Sbjct: 1111 RKGLIFVSV 1119
>gi|26351727|dbj|BAC39500.1| unnamed protein product [Mus musculus]
Length = 1207
Score = 403 bits (1036), Expect = e-109, Method: Compositional matrix adjust.
Identities = 234/609 (38%), Positives = 345/609 (56%), Gaps = 33/609 (5%)
Query: 349 LKNEETKPWGRDTQAKLGSRLVELLIETAYVQHPVNPADYSPPDVRPAFRHRFKTILKHP 408
L+ +PW +LG +L ELL++ VQ P + A R + +
Sbjct: 530 LEAPAQQPWSVPVLLQLGKQLAELLVQA--VQMPRSLA------ARQGAQRSIPVLYHVY 581
Query: 409 GQKTTKRYGVVECDPLVLEGLDRSAKHMLI---PYVPMLVPPKKWKGYNKGGYLFLPSYV 465
++ ++ G+++ P L+ +A+ L VPML PP W + G YL + +
Sbjct: 582 SFRSYRQVGILKPHPAFTHLLETAAEPTLTFETTEVPMLCPPLPWTSLHSGAYLLSSTKL 641
Query: 466 MR-THGSRKQQEALKSVTGNCMKKVFEALDTLGSTKWRVNKQVLSVLESIWVSGGNIAGL 524
MR T G+ + Q L+ + +AL LG+ WRVN +L ++ I+ G +
Sbjct: 642 MRATEGTTQHQRLLEQCPPAQLHGPLDALTQLGNCAWRVNGHLLDLVLQIFRDKGCMPLG 701
Query: 525 VD--RNDVLIPEK-PLSEDMTEVQK--WKWSVRKAKKINQERHSQRCDTELKLSVARRMK 579
V R++ P + L T V K + + + K+ +E HS R + +LS+A+ ++
Sbjct: 702 VPPPRSEAPRPARYQLPPGSTPVHKSELRKELARCLKVAREMHSLRSEALYRLSLAQHLR 761
Query: 580 DEEGFYYPHNLDFRGRAYPMHPHLNHLSSDVCRGVLEFAEGRPLGKSGLRWLKIHLANLF 639
F+ PHN+DFRGR YP PH NHL SD+ R +LEFAEGRPLG GL WLKIHL NL
Sbjct: 762 -HRVFWLPHNMDFRGRTYPCPPHFNHLGSDLARALLEFAEGRPLGPRGLDWLKIHLINL- 819
Query: 640 SGGVEKLSHDGRLAFVENHLYEIFDSAENPINGSRWWLTAEDPFQCLAACINLSEALKSS 699
+G + S RLAF + + EI DSA+NP+ G +WW+ A++P+Q LA C+ ++ A++S
Sbjct: 820 TGLKKGDSLRMRLAFADEVMEEILDSADNPLTGRKWWMEADEPWQTLACCMEVAHAVRSP 879
Query: 700 SPHSVISHLPIHQDGSCNGLQHYAALGRNTLEAAAVNLVAGEKPADVYSEIAVRVHEIMK 759
P + ISHLP+HQDGSCNGLQHYAALGR+++ AA+VNL + P DVY E+A +V E +
Sbjct: 880 DPAAYISHLPVHQDGSCNGLQHYAALGRDSVGAASVNLTPSDLPQDVYREVATQVEEFRQ 939
Query: 760 RDSNKDPSKHPQALLAKILIDQVDRKLVKQTVMTSVYGVTFVGAREQIKRRLEEKGHITD 819
+D+ + +A++L + RK+VKQTVMT VYGVT G R QI++RL E ++D
Sbjct: 940 QDAKEG------LRVAQVLEGFISRKVVKQTVMTVVYGVTRYGGRLQIEKRLRE---LSD 990
Query: 820 DRQLFA--AACYAAKVTLTALGEIFEAARSIMGWLGDCAKVIASENQPVRWTTPLGLPVV 877
Q F A+ Y + +L E+F + R+I WL + A +I+ PV W TPLG+P++
Sbjct: 991 FPQEFVWEASHYLVRQVFKSLQEMFTSTRAIQHWLTESANLISHAGWPVEWVTPLGIPII 1050
Query: 878 QPYCKNERHLIRTSLQVLALQR---EGNLVKIRKQRTAFPPNFVHSLDGSHMMMTAVACR 934
QPY + + ++ LQ + L E KQ+ FPPNF+HSLD SHMM+TA+ C
Sbjct: 1051 QPYHRESKVQVKGGLQSITLTSSVDESQKPNTLKQKNGFPPNFIHSLDSSHMMLTALHCY 1110
Query: 935 DAGLHFAGL 943
GL F +
Sbjct: 1111 RKGLIFVSV 1119
>gi|74193237|dbj|BAE20618.1| unnamed protein product [Mus musculus]
Length = 1069
Score = 403 bits (1036), Expect = e-109, Method: Compositional matrix adjust.
Identities = 234/609 (38%), Positives = 345/609 (56%), Gaps = 33/609 (5%)
Query: 349 LKNEETKPWGRDTQAKLGSRLVELLIETAYVQHPVNPADYSPPDVRPAFRHRFKTILKHP 408
L+ +PW +LG +L ELL++ VQ P + A R + +
Sbjct: 392 LEAPAQQPWSVPVLLQLGKQLAELLVQA--VQMPRSLA------ARQGAQRSIPVLYHVY 443
Query: 409 GQKTTKRYGVVECDPLVLEGLDRSAKHMLI---PYVPMLVPPKKWKGYNKGGYLFLPSYV 465
++ ++ G+++ P L+ +A+ L VPML PP W + G YL + +
Sbjct: 444 SFRSYRQVGILKPHPAFTHLLETAAEPTLTFETTEVPMLCPPLPWTSLHSGAYLLSSTKL 503
Query: 466 MR-THGSRKQQEALKSVTGNCMKKVFEALDTLGSTKWRVNKQVLSVLESIWVSGGNIAGL 524
MR T G+ + Q L+ + +AL LG+ WRVN +L ++ I+ G +
Sbjct: 504 MRATEGTTQHQRLLEQCPPAQLHGPLDALTQLGNCAWRVNGHLLDLVLQIFRDKGCMPLG 563
Query: 525 VD--RNDVLIPEK-PLSEDMTEVQK--WKWSVRKAKKINQERHSQRCDTELKLSVARRMK 579
V R++ P + L T V K + + + K+ +E HS R + +LS+A+ ++
Sbjct: 564 VPPPRSEAPRPARYQLPPGSTPVHKSELRKELARCLKVAREMHSLRSEALYRLSLAQHLR 623
Query: 580 DEEGFYYPHNLDFRGRAYPMHPHLNHLSSDVCRGVLEFAEGRPLGKSGLRWLKIHLANLF 639
F+ PHN+DFRGR YP PH NHL SD+ R +LEFAEGRPLG GL WLKIHL NL
Sbjct: 624 -HRVFWLPHNMDFRGRTYPCPPHFNHLGSDLARALLEFAEGRPLGPRGLDWLKIHLINL- 681
Query: 640 SGGVEKLSHDGRLAFVENHLYEIFDSAENPINGSRWWLTAEDPFQCLAACINLSEALKSS 699
+G + S RLAF + + EI DSA+NP+ G +WW+ A++P+Q LA C+ ++ A++S
Sbjct: 682 TGLKKGDSLRMRLAFADEVMEEILDSADNPLTGRKWWMEADEPWQTLACCMEVAHAVRSP 741
Query: 700 SPHSVISHLPIHQDGSCNGLQHYAALGRNTLEAAAVNLVAGEKPADVYSEIAVRVHEIMK 759
P + ISHLP+HQDGSCNGLQHYAALGR+++ AA+VNL + P DVY E+A +V E +
Sbjct: 742 DPAAYISHLPVHQDGSCNGLQHYAALGRDSVGAASVNLTPSDLPQDVYREVATQVEEFRQ 801
Query: 760 RDSNKDPSKHPQALLAKILIDQVDRKLVKQTVMTSVYGVTFVGAREQIKRRLEEKGHITD 819
+D+ + +A++L + RK+VKQTVMT VYGVT G R QI++RL E ++D
Sbjct: 802 QDAKEG------LRVAQVLEGFISRKVVKQTVMTVVYGVTRYGGRLQIEKRLRE---LSD 852
Query: 820 DRQLFA--AACYAAKVTLTALGEIFEAARSIMGWLGDCAKVIASENQPVRWTTPLGLPVV 877
Q F A+ Y + +L E+F + R+I WL + A +I+ PV W TPLG+P++
Sbjct: 853 FPQEFVWEASHYLVRQVFKSLQEMFTSTRAIQHWLTESANLISHAGWPVEWVTPLGIPII 912
Query: 878 QPYCKNERHLIRTSLQVLALQR---EGNLVKIRKQRTAFPPNFVHSLDGSHMMMTAVACR 934
QPY + + ++ LQ + L E KQ+ FPPNF+HSLD SHMM+TA+ C
Sbjct: 913 QPYHRESKVQVKGGLQSITLTSSVDESQKPNTLKQKNGFPPNFIHSLDSSHMMLTALHCY 972
Query: 935 DAGLHFAGL 943
GL F +
Sbjct: 973 RKGLIFVSV 981
>gi|281341337|gb|EFB16921.1| hypothetical protein PANDA_012709 [Ailuropoda melanoleuca]
Length = 1170
Score = 403 bits (1036), Expect = e-109, Method: Compositional matrix adjust.
Identities = 227/613 (37%), Positives = 343/613 (55%), Gaps = 48/613 (7%)
Query: 355 KPWGRDTQAKLGSRLVELLIETAYVQHPVNPADYSPPD----VRPAFRHRFKTILKHPGQ 410
+PW +LG +L E+L+E + P P + P H +
Sbjct: 511 QPWPLPVLVQLGKKLAEVLVEVVRM-----PGSLVTPQGSCTLIPVLYHVYSF------- 558
Query: 411 KTTKRYGVVECDPLVLEGLDRSAKHMLI---PYVPMLVPPKKWKGYNKGGYLFLPSYVMR 467
++ ++ G+++ P E L +A+H L VPML PP W + G +L P+ +MR
Sbjct: 559 RSFRQIGILKPHPAFTELLAVAAEHTLTFEAAEVPMLCPPLPWMSPHTGAFLLSPTKLMR 618
Query: 468 T-HGSRKQQEALKSVTGNC-----MKKVFEALDTLGSTKWRVNKQVLSVLESIWVSGGNI 521
+ G+ + Q L + +AL LG+ WRVN +VL ++ ++ + G
Sbjct: 619 SLEGTMQHQRLLPPPPPPPPPPAELHGALDALTQLGNCAWRVNGRVLDLVLELFTAKGCP 678
Query: 522 AGLVDRNDVLIPEKP---LSEDMTEVQKW--KWSVRKAKKINQERHSQRCDTELKLSVAR 576
V P P L + QK + V + K+ +E HS R D +LS+A+
Sbjct: 679 RLGVPAPPSEAPRPPDGRLPPSASSAQKAEVRREVARCLKVAREMHSLRSDALYRLSLAQ 738
Query: 577 RMKDEEGFYYPHNLDFRGRAYPMHPHLNHLSSDVCRGVLEFAEGRPLGKSGLRWLKIHLA 636
++D F+ PHN+DFRGR YP PH NHL SD+ R +LEFA+GRPLG GL WLKIHL
Sbjct: 739 HLRDRV-FWLPHNMDFRGRTYPCPPHFNHLGSDLARALLEFAQGRPLGPHGLDWLKIHLV 797
Query: 637 NLFSGGVEKLSHD---GRLAFVENHLYEIFDSAENPINGSRWWLTAEDPFQCLAACINLS 693
NL G++K H+ RL F + + +I DSA+ P+ G +WW+ A++P+Q LA C+ ++
Sbjct: 798 NL--TGLKK--HEPLRARLLFADEVMDDILDSADRPMTGRKWWMEADEPWQALACCMEIA 853
Query: 694 EALKSSSPHSVISHLPIHQDGSCNGLQHYAALGRNTLEAAAVNLVAGEKPADVYSEIAVR 753
A++++ P + +SH P+HQDGSCNGLQHYAALGR+++ AA+VNL+ + P DVYS +A +
Sbjct: 854 RAVRTADPTAYVSHFPVHQDGSCNGLQHYAALGRDSVGAASVNLLPSDLPQDVYSGVAAQ 913
Query: 754 VHEIMKRDSNKDPSKHPQALLAKILIDQVDRKLVKQTVMTSVYGVTFVGAREQIKRRLEE 813
V ++D+ + +A++L + RK+VKQTVMT VYGVT G R QI+RRL E
Sbjct: 914 VEVFRRQDAERG------VRVAQVLEGFISRKVVKQTVMTVVYGVTRYGGRLQIERRLRE 967
Query: 814 KGHITDDRQLFAAACYAAKVTLTALGEIFEAARSIMGWLGDCAKVIASENQPVRWTTPLG 873
+ + ++ A+ Y + +L E+F R+I WL + A++I+ V W TPLG
Sbjct: 968 LSNFPQEF-VWEASHYLVRQVFNSLQEMFSGTRAIQHWLTESARLISHAGSAVEWVTPLG 1026
Query: 874 LPVVQPYCKNERHLIRTSLQVLALQREGNLVK---IRKQRTAFPPNFVHSLDGSHMMMTA 930
+PV+QPY ++ + LI +Q L + G+ + KQ+ FPPNF+HSLD SHMM+TA
Sbjct: 1027 IPVIQPYHQDSKVLISGGIQSLTFSQSGDTTQKPNTLKQKNGFPPNFIHSLDSSHMMLTA 1086
Query: 931 VACRDAGLHFAGL 943
+ C GL F +
Sbjct: 1087 LHCYRKGLTFVSV 1099
>gi|332255805|ref|XP_003277019.1| PREDICTED: DNA-directed RNA polymerase, mitochondrial [Nomascus
leucogenys]
Length = 1230
Score = 402 bits (1034), Expect = e-109, Method: Compositional matrix adjust.
Identities = 249/745 (33%), Positives = 400/745 (53%), Gaps = 46/745 (6%)
Query: 216 IKGLFLGWFGPLSEAI-EREQKMQR-TKKQKAAYAPHIELLPADKVAVIVMHKMMGLVMA 273
+K L W L A+ E + +++R + + + P + LL +V +++ + L
Sbjct: 434 LKTLRDQWEKALCRALKETKNRLEREVHEGRFSLYPFLCLLDEREVVRMLLQVLQALPAQ 493
Query: 274 GHEDRCVQVVQAAVHIGMAIEQEIRIHSFLEKTKNYKRKKIIADTEEVLSKEKELLRKRV 333
G + +A + Q R+ ++ +N+ RK + + + L R+
Sbjct: 494 GESFTTLARELSARTFSRHVVQRQRLSGQVQALQNHYRKYLCLLASDTTVPKPCLPRQYW 553
Query: 334 NSLIKSKRVMEAQKLLKNEETKPWGRDTQAKLGSRLVELLIETAYVQHPVNPADYSPPDV 393
+L + + E +PW Q +LG L E+L++ + ++ S V
Sbjct: 554 EALGAPEALRE----------QPWPLPVQMELGKLLAEMLVQATQMPSSLDKLRRSSRLV 603
Query: 394 RPAFRHRFKTILKHPGQKTTKRYGVVECDPLVLEGLDRSAKHMLI---PYVPMLVPPKKW 450
P H + + ++ G+++ P ++ L+++A+ L VPML PP W
Sbjct: 604 -PVLYHVYSF-------RNVQQIGILKPHPAYVQLLEKAAEPTLTFEAVDVPMLCPPLPW 655
Query: 451 KGYNKGGYLFLPSYVMRT-HGSRKQQEALKSVTGNCMKKVFEALDTLGSTKWRVNKQVLS 509
+ G +L P+ +MRT G+ + QE L++ + +AL LG+ WRVN VL
Sbjct: 656 TSPHSGAFLLSPTKLMRTVEGATQHQELLETCPPTALHGALDALTQLGNCAWRVNGPVLD 715
Query: 510 VLESIWVSGGNIAGLVDRNDVLIPEKP---LSEDMTEVQK--WKWSVRKAKKINQERHSQ 564
++ ++ + G V P+ P L T +K + + +K+ ++ HS
Sbjct: 716 LVLQLFQAKGCPQLGVPAPPSEAPQPPEVHLPHSATPARKAELRRELAHCQKVARDMHSL 775
Query: 565 RCDTELKLSVARRMKDEEGFYYPHNLDFRGRAYPMHPHLNHLSSDVCRGVLEFAEGRPLG 624
R + +LS+A+ ++D F+ PHN+DFRGR YP PH NHL SDV R +L FA+GRPLG
Sbjct: 776 RVEALYRLSLAQHLRDCV-FWLPHNMDFRGRTYPCPPHFNHLGSDVARALLVFAQGRPLG 834
Query: 625 KSGLRWLKIHLANLFSGGVEKLSHDGRLAFVENHLYEIFDSAENPINGSRWWLTAEDPFQ 684
GL WLKIHL NL +G ++ RLAF E + +I DSA+ P+ G +WW+ AE+P+Q
Sbjct: 835 PHGLDWLKIHLVNL-TGFKKREPLQKRLAFAEEVMDDILDSADRPLTGRKWWMGAEEPWQ 893
Query: 685 CLAACINLSEALKSSSPHSVISHLPIHQDGSCNGLQHYAALGRNTLEAAAVNLVAGEKPA 744
LA C+ +++A+++S P + +SHLP+HQDGSCNGLQHYAALGR+++ AA+VNL + P
Sbjct: 894 TLACCMEVAKAVRASDPAAYVSHLPVHQDGSCNGLQHYAALGRDSVGAASVNLEPSDVPQ 953
Query: 745 DVYSEIAVRVHEIMKRDSNKDPSKHPQALLAKILIDQVDRKLVKQTVMTSVYGVTFVGAR 804
DVYS +A +V ++D+ + +A++L + RK+VKQTVMT VYGVT G R
Sbjct: 954 DVYSGVAAQVEVFRRQDAQRG------TRVAQVLEGFITRKVVKQTVMTVVYGVTRYGGR 1007
Query: 805 EQIKRRLEEKGHITDDRQLFA--AACYAAKVTLTALGEIFEAARSIMGWLGDCAKVIASE 862
QI++RL E + D Q F A+ Y + +L E+F R+I WL + A++I+
Sbjct: 1008 LQIEKRLRE---LNDFPQEFVWEASHYLVRQVFKSLQEMFSGTRAIQHWLTESARLISHT 1064
Query: 863 NQPVRWTTPLGLPVVQPY-CKNERHLIRTSLQVLALQREGNLVK---IRKQRTAFPPNFV 918
V W TPLG+P++QPY +++ + +Q + G++ + RKQ+ FPPNF+
Sbjct: 1065 GSVVEWVTPLGVPIIQPYRLESKVKQLGGGIQSITYTHNGDISRKPNTRKQKNGFPPNFI 1124
Query: 919 HSLDGSHMMMTAVACRDAGLHFAGL 943
HSLD SHMM+TA+ C GL F +
Sbjct: 1125 HSLDSSHMMLTALHCYRKGLTFVSV 1149
>gi|148699721|gb|EDL31668.1| polymerase (RNA) mitochondrial (DNA directed), isoform CRA_c [Mus
musculus]
Length = 1166
Score = 402 bits (1034), Expect = e-109, Method: Compositional matrix adjust.
Identities = 234/609 (38%), Positives = 345/609 (56%), Gaps = 33/609 (5%)
Query: 349 LKNEETKPWGRDTQAKLGSRLVELLIETAYVQHPVNPADYSPPDVRPAFRHRFKTILKHP 408
L+ +PW +LG +L ELL++ VQ P + A R + +
Sbjct: 530 LEAPAQQPWSVPVLLQLGKQLAELLVQA--VQMPRSLA------ARQGAQRSIPVLYHVY 581
Query: 409 GQKTTKRYGVVECDPLVLEGLDRSAKHMLI---PYVPMLVPPKKWKGYNKGGYLFLPSYV 465
++ ++ G+++ P L+ +A+ L VPML PP W + G YL + +
Sbjct: 582 SFRSYRQVGILKPHPAFTHLLETAAEPTLTFETTEVPMLCPPLPWTSLHSGAYLLSSTKL 641
Query: 466 MR-THGSRKQQEALKSVTGNCMKKVFEALDTLGSTKWRVNKQVLSVLESIWVSGGNIAGL 524
MR T G+ + Q L+ + +AL LG+ WRVN +L ++ I+ G +
Sbjct: 642 MRATEGTTQHQRLLEQCPPAQLHGPLDALTQLGNCAWRVNGHLLDLVLQIFRDKGCMPLG 701
Query: 525 VD--RNDVLIPEK-PLSEDMTEVQK--WKWSVRKAKKINQERHSQRCDTELKLSVARRMK 579
V R++ P + L T V K + + + K+ +E HS R + +LS+A+ ++
Sbjct: 702 VPPPRSEAPRPARYQLPPGSTPVHKSELRKELARCLKVAREMHSLRSEALYRLSLAQHLR 761
Query: 580 DEEGFYYPHNLDFRGRAYPMHPHLNHLSSDVCRGVLEFAEGRPLGKSGLRWLKIHLANLF 639
F+ PHN+DFRGR YP PH NHL SD+ R +LEFAEGRPLG GL WLKIHL NL
Sbjct: 762 -HRVFWLPHNMDFRGRTYPCPPHFNHLGSDLARALLEFAEGRPLGPRGLDWLKIHLINL- 819
Query: 640 SGGVEKLSHDGRLAFVENHLYEIFDSAENPINGSRWWLTAEDPFQCLAACINLSEALKSS 699
+G + S RLAF + + EI DSA+NP+ G +WW+ A++P+Q LA C+ ++ A++S
Sbjct: 820 TGLKKGDSLRMRLAFADEVMEEILDSADNPLTGRKWWMEADEPWQTLACCMEVAHAVRSP 879
Query: 700 SPHSVISHLPIHQDGSCNGLQHYAALGRNTLEAAAVNLVAGEKPADVYSEIAVRVHEIMK 759
P + ISHLP+HQDGSCNGLQHYAALGR+++ AA+VNL + P DVY E+A +V E +
Sbjct: 880 DPAAYISHLPVHQDGSCNGLQHYAALGRDSVGAASVNLTPSDLPQDVYREVATQVEEFRQ 939
Query: 760 RDSNKDPSKHPQALLAKILIDQVDRKLVKQTVMTSVYGVTFVGAREQIKRRLEEKGHITD 819
+D+ + +A++L + RK+VKQTVMT VYGVT G R QI++RL E ++D
Sbjct: 940 QDAKEG------LRVAQVLEGFISRKVVKQTVMTVVYGVTRYGGRLQIEKRLRE---LSD 990
Query: 820 DRQLFA--AACYAAKVTLTALGEIFEAARSIMGWLGDCAKVIASENQPVRWTTPLGLPVV 877
Q F A+ Y + +L E+F + R+I WL + A +I+ PV W TPLG+P++
Sbjct: 991 FPQEFVWEASHYLVRQVFKSLQEMFTSTRAIQHWLTESANLISHAGWPVEWVTPLGIPII 1050
Query: 878 QPYCKNERHLIRTSLQVLALQR---EGNLVKIRKQRTAFPPNFVHSLDGSHMMMTAVACR 934
QPY + + ++ LQ + L E KQ+ FPPNF+HSLD SHMM+TA+ C
Sbjct: 1051 QPYHRESKVQVKGGLQSITLTSSVDESQKPNTLKQKNGFPPNFIHSLDSSHMMLTALHCY 1110
Query: 935 DAGLHFAGL 943
GL F +
Sbjct: 1111 RKGLIFVSV 1119
>gi|301776278|ref|XP_002923551.1| PREDICTED: DNA-directed RNA polymerase, mitochondrial-like
[Ailuropoda melanoleuca]
Length = 1228
Score = 402 bits (1034), Expect = e-109, Method: Compositional matrix adjust.
Identities = 230/616 (37%), Positives = 343/616 (55%), Gaps = 54/616 (8%)
Query: 355 KPWGRDTQAKLGSRLVELLIETAYVQHPVNPADYSPPD----VRPAFRHRFKTILKHPGQ 410
+PW +LG +L E+L+E + P P + P H +
Sbjct: 559 QPWPLPVLVQLGKKLAEVLVEVVRM-----PGSLVTPQGSCTLIPVLYHVYSF------- 606
Query: 411 KTTKRYGVVECDPLVLEGLDRSAKHMLI---PYVPMLVPPKKWKGYNKGGYLFLPSYVMR 467
++ ++ G+++ P E L +A+H L VPML PP W + G +L P+ +MR
Sbjct: 607 RSFRQIGILKPHPAFTELLAVAAEHTLTFEAAEVPMLCPPLPWMSPHTGAFLLSPTKLMR 666
Query: 468 T-HGSRKQQEALKSVTGNC-----MKKVFEALDTLGSTKWRVNKQVLS-VLESIWVSGGN 520
+ G+ + Q L + +AL LG+ WRVN +VL VLE G
Sbjct: 667 SLEGTMQHQRLLPPPPPPPPPPAELHGALDALTQLGNCAWRVNGRVLDLVLELFTAKGCP 726
Query: 521 IAGLVDRN-------DVLIPEKPLSEDMTEVQKWKWSVRKAKKINQERHSQRCDTELKLS 573
G+ D +P S EV++ V + K+ +E HS R D +LS
Sbjct: 727 RLGVPAPPSEAPRPPDGRLPPSASSAQKAEVRR---EVARCLKVAREMHSLRSDALYRLS 783
Query: 574 VARRMKDEEGFYYPHNLDFRGRAYPMHPHLNHLSSDVCRGVLEFAEGRPLGKSGLRWLKI 633
+A+ ++D F+ PHN+DFRGR YP PH NHL SD+ R +LEFA+GRPLG GL WLKI
Sbjct: 784 LAQHLRDRV-FWLPHNMDFRGRTYPCPPHFNHLGSDLARALLEFAQGRPLGPHGLDWLKI 842
Query: 634 HLANLFSGGVEKLSHD---GRLAFVENHLYEIFDSAENPINGSRWWLTAEDPFQCLAACI 690
HL NL G++K H+ RL F + + +I DSA+ P+ G +WW+ A++P+Q LA C+
Sbjct: 843 HLVNL--TGLKK--HEPLRARLLFADEVMDDILDSADRPMTGRKWWMEADEPWQALACCM 898
Query: 691 NLSEALKSSSPHSVISHLPIHQDGSCNGLQHYAALGRNTLEAAAVNLVAGEKPADVYSEI 750
++ A++++ P + +SH P+HQDGSCNGLQHYAALGR+++ AA+VNL+ + P DVYS +
Sbjct: 899 EIARAVRTADPTAYVSHFPVHQDGSCNGLQHYAALGRDSVGAASVNLLPSDLPQDVYSGV 958
Query: 751 AVRVHEIMKRDSNKDPSKHPQALLAKILIDQVDRKLVKQTVMTSVYGVTFVGAREQIKRR 810
A +V ++D+ + +A++L + RK+VKQTVMT VYGVT G R QI+RR
Sbjct: 959 AAQVEVFRRQDAERG------VRVAQVLEGFISRKVVKQTVMTVVYGVTRYGGRLQIERR 1012
Query: 811 LEEKGHITDDRQLFAAACYAAKVTLTALGEIFEAARSIMGWLGDCAKVIASENQPVRWTT 870
L E + + ++ A+ Y + +L E+F R+I WL + A++I+ V W T
Sbjct: 1013 LRELSNFPQEF-VWEASHYLVRQVFNSLQEMFSGTRAIQHWLTESARLISHAGSAVEWVT 1071
Query: 871 PLGLPVVQPYCKNERHLIRTSLQVLALQREGNLVK---IRKQRTAFPPNFVHSLDGSHMM 927
PLG+PV+QPY ++ + LI +Q L + G+ + KQ+ FPPNF+HSLD SHMM
Sbjct: 1072 PLGIPVIQPYHQDSKVLISGGIQSLTFSQSGDTTQKPNTLKQKNGFPPNFIHSLDSSHMM 1131
Query: 928 MTAVACRDAGLHFAGL 943
+TA+ C GL F +
Sbjct: 1132 LTALHCYRKGLTFVSV 1147
>gi|403169890|ref|XP_003329308.2| hypothetical protein PGTG_10360 [Puccinia graminis f. sp. tritici CRL
75-36-700-3]
gi|375168465|gb|EFP84889.2| hypothetical protein PGTG_10360 [Puccinia graminis f. sp. tritici CRL
75-36-700-3]
Length = 1409
Score = 402 bits (1033), Expect = e-109, Method: Compositional matrix adjust.
Identities = 250/676 (36%), Positives = 359/676 (53%), Gaps = 114/676 (16%)
Query: 357 WGRDTQAKLGSRLVELLIETAYVQHPVNPADYSP-PDVRPAFRHRFKTILKHPGQKTTKR 415
W ++K+G+ ++ L+ET+ + D S +V+PAF ++T G KR
Sbjct: 597 WTIQQRSKVGALVMRGLLETSKITRSTVLEDGSVYEEVQPAF---YQTTQYFDG----KR 649
Query: 416 YGVVECDPLVLEGLDRSAKHM-LIP-YVPMLVPPKKWKGYNKGGYLFLPSYVMRTHGSRK 473
GV + + V E LD ++ L P Y+PM+ P W G YL + +MRT S +
Sbjct: 650 VGVTKMNEAVAERLDLDPANVSLHPRYLPMVCRPMPWTHPKNGAYLVHGAPLMRTRDSPE 709
Query: 474 QQ-EALKSVTGNCMKKVFEALDTLGSTKWRVNKQVLSVLESIWVSGGNIAGLVDRND--V 530
Q L++ + ++ V++ALD LG+T W +N+ V + ++W G +AG+ R+
Sbjct: 710 QALHLLEAHRFHGLENVYKALDKLGNTPWNINRPVFDTMSTVWNQGIQLAGIPIRDPHLN 769
Query: 531 LIPEK--------------PLSEDMTEVQKWKWSVRKAKKIN------------------ 558
L P++ P S+D Q S ++ N
Sbjct: 770 LKPDQIEKLFFSPPPSSTTPASDDEHHDQLENQSSSSSQLENPRSEGEKKEIYRSLLASR 829
Query: 559 QERHSQRCDTELKLSVARRMKDEEGFYYPHNLDFRGRAYPMHPHLNHLSSDVCRGVLEFA 618
+ + QRC +L +AR +E FY+PHN+DFRGRAYP+ +LNH+ D+ RG+L+FA
Sbjct: 830 RSAYGQRCSVNYQLEIARAYLNET-FYFPHNIDFRGRAYPIPANLNHIGDDISRGLLKFA 888
Query: 619 EGRPLGKSGLRWLKIHLANLFSGGVEKLSHDGRLAFVENHLYEIFDSAENPINGSRWWLT 678
E + LG+ GLRWLKIHL+N + G +K S D R F+E L +FDSA+ P+ G RWWL
Sbjct: 889 EEKELGEDGLRWLKIHLSNKY--GNDKASLDDRAKFIEERLELVFDSADRPLEGKRWWLE 946
Query: 679 AEDPFQCLAACINLSEALKSSSPHSVISHLPIHQDGSCNGLQHYAALGRNTLEAAAVNLV 738
+EDP+Q LA C+ L+ AL+S P + S LP+HQDGSCNGLQHYAALG + VNLV
Sbjct: 947 SEDPWQTLAGCMELTAALRSPDPTAYRSSLPVHQDGSCNGLQHYAALGGDIDGGKEVNLV 1006
Query: 739 AGEKPADVYSEIAVRVHEIMKRDSNKDPSKHPQALLAKILIDQVDRKLVKQTVMTSVYGV 798
GEKP DVYS++AV V +++ D+ +AK L + RK+VKQTVMT+VYGV
Sbjct: 1007 PGEKPGDVYSKVAVEVAKLVDFDAANGHD------IAKALKGHIKRKVVKQTVMTTVYGV 1060
Query: 799 TFVGAREQIKRRLEEKGHITDDRQLFAAACYAAKVTLTALGEIFEAARSIMGWL------ 852
TFVGAREQIKR+L++ G + L+ +A Y A + L ++GE+F+ A +I WL
Sbjct: 1061 TFVGAREQIKRQLKDLG-VIPIPNLYISAAYVATLVLRSIGEVFKGAVAIQKWLTIVARL 1119
Query: 853 -------------------------GDCAKVIASENQP---------------------- 865
G+ A+ +A +P
Sbjct: 1120 VSKSIPPERVESLTTSPSTAKKQKEGEGAEGVAKTKKPRPVKRKLPGSSSAAHDPDVEVE 1179
Query: 866 ----VRWTTPLGLPVVQPYCKNERHLIRTSLQVLALQR--EGNLVKIRKQRTAFPPNFVH 919
+ WTTPLGL V QPY R I+T LQ + + E R Q +AFPPNF+H
Sbjct: 1180 LMTSMTWTTPLGLVVCQPYRAQNRTQIKTVLQTVYIADPFEPAQADSRSQASAFPPNFIH 1239
Query: 920 SLDGSHMMMTAVACRD 935
SLD +HMM+TA+AC+D
Sbjct: 1240 SLDATHMMLTALACQD 1255
>gi|351714005|gb|EHB16924.1| DNA-directed RNA polymerase, mitochondrial [Heterocephalus glaber]
Length = 1213
Score = 401 bits (1030), Expect = e-109, Method: Compositional matrix adjust.
Identities = 223/548 (40%), Positives = 321/548 (58%), Gaps = 29/548 (5%)
Query: 411 KTTKRYGVVECDPLVLEGLDRSAKHMLI---PYVPMLVPPKKWKGYNKGGYLFLPSYVMR 467
+ ++ G + P ++ LD +A+ ++I +PML PP W GG+L P+ +MR
Sbjct: 597 RGIRQIGFLRPHPAFIQLLDDAAEPLMIFEATDMPMLCPPLPWASSQSGGFLLSPTKLMR 656
Query: 468 T-HGSRKQQEALKSVTGNCMKKVFEALDTLGSTKWRVNKQVLSVLESIWVSGGNIAGLVD 526
+ GS + Q L S + + L LG+ WRVN +VL ++ I+ + G V
Sbjct: 657 SVDGSLQHQNLLDSWPPTELHGALDTLTQLGNCAWRVNGRVLDLVLEIFRNKGCARLGVP 716
Query: 527 RNDVLIPEKPLSEDMT------EVQKWKWSVRKAKKINQERHSQRCDTELKLSVARRMKD 580
P PL ED+ + + V KI +E H R + +L+ R
Sbjct: 717 PPASEAPRPPL-EDLPPNASPHRKAELRQEVASCLKIAREMHGLRREALYRLAQHLR--- 772
Query: 581 EEGFYYPHNLDFRGRAYPMHPHLNHLSSDVCRGVLEFAEGRPLGKSGLRWLKIHLANLFS 640
+ F+ PHN+DFRGR+YP PH NHL SD+ R +LEFAEGRPLG GL WLKIHL NL +
Sbjct: 773 HQVFWLPHNMDFRGRSYPCPPHFNHLGSDLARALLEFAEGRPLGPHGLDWLKIHLINL-T 831
Query: 641 GGVEKLSHDGRLAFVENHLYEIFDSAENPINGSRWWLTAEDPFQCLAACINLSEALKSSS 700
G ++ S RLAF + +I DSA+ P+ G +WW+ AEDP+Q LA C+ ++ A++S
Sbjct: 832 GVKKRESLRVRLAFANTVMDDILDSADQPMTGRKWWMEAEDPWQTLACCMEVAGAVRSPD 891
Query: 701 PHSVISHLPIHQDGSCNGLQHYAALGRNTLEAAAVNLVAGEKPADVYSEIAVRVHEIMKR 760
P + +SHLPIHQDGSCNGLQHYAALGR+++ AA+VNL+A +KP DVYS +A +V E+ +
Sbjct: 892 PAAYVSHLPIHQDGSCNGLQHYAALGRDSVGAASVNLMASDKPQDVYSGVAAQV-EVFRT 950
Query: 761 DSNKDPSKHPQALLAKILIDQVDRKLVKQTVMTSVYGVTFVGAREQIKRRLEEKGHITDD 820
K K +A++L + RK+VKQTVMT VYGVT G R QI++RL E ++D
Sbjct: 951 QDAKQGLK-----VAQVLEGFISRKVVKQTVMTVVYGVTLYGGRLQIEKRLRE---LSDF 1002
Query: 821 RQLFA--AACYAAKVTLTALGEIFEAARSIMGWLGDCAKVIASENQPVRWTTPLGLPVVQ 878
Q+F A+ Y ++ +L EIF + R+I WL + A++IA V W TPLG+P++Q
Sbjct: 1003 PQVFVWEASRYLVRLVFKSLQEIFSSTRTIQHWLTESARLIAQAGSAVEWVTPLGIPIIQ 1062
Query: 879 PYCKNERHLIRTSLQVLALQREGNLVK---IRKQRTAFPPNFVHSLDGSHMMMTAVACRD 935
PY + + ++R LQ + + + KQ+ FPPNF+HSLD HMM+TA+ C
Sbjct: 1063 PYHRESKLVLRGGLQSITWNSSVDPTRKPNTMKQKNGFPPNFIHSLDSCHMMLTALHCYR 1122
Query: 936 AGLHFAGL 943
GL F +
Sbjct: 1123 KGLTFVSV 1130
>gi|149244242|ref|XP_001526664.1| hypothetical protein LELG_01492 [Lodderomyces elongisporus NRRL
YB-4239]
gi|146449058|gb|EDK43314.1| hypothetical protein LELG_01492 [Lodderomyces elongisporus NRRL
YB-4239]
Length = 1307
Score = 401 bits (1030), Expect = e-108, Method: Compositional matrix adjust.
Identities = 265/829 (31%), Positives = 430/829 (51%), Gaps = 85/829 (10%)
Query: 158 LYKRIKLQEYREMKKR---KFNLLRRRQVKQETEAWERMVDEYKELEAKMIEKRLAPNLP 214
+Y +++ E ++ R +FN R+RQ+ E E +++K + + KR N+
Sbjct: 360 IYNKLETAEQKKQFNRALDEFNHDRQRQI--EVRGMEGAREKWKH-DFEEATKRGDLNMS 416
Query: 215 HIKGL---FLGWFGPLSEAIEREQKMQRT---------------KKQKAAYAPHIELLPA 256
KGL WF L I+REQ + R +++A YAP++ +PA
Sbjct: 417 --KGLNAKCYEWFQELMPLIKREQDLCRDLINGDKSAKQGSTEDARERALYAPYLIQVPA 474
Query: 257 DKVAVIVMHKMMGLVMAGHEDRCVQVVQAAVHIGMAIEQEIRIHSFLEK-TKNYKRKKII 315
++ AVI + ++ A ++ +++ Q +G + E E ++ +K K + KK
Sbjct: 475 ERAAVITILDVLRQHAANTSNKGMRISQTMAGVGKSFEAESKVSKLAKKDAKLFASKKFA 534
Query: 316 ADTEEVLSKEKELLRKRVNSLIKSKRVMEAQKLLKNEETKPWGRDTQAKLGSRLVELLIE 375
T+ +RV+ ++++ W ++K+G L+ L+
Sbjct: 535 GSTQ-------------------LQRVIRKSLEKQDDKGLVWDPLIRSKIGGVLLSFLMS 575
Query: 376 TAYVQHPVNPADYSPPDVRPAFRHRFKTILKHPGQKTTKRYGVVECDPLVLEGLDRSAKH 435
+A V+ + + PAF F ++ + G K+ + + VL G ++ +
Sbjct: 576 SAKVKVTRDVDGKKESAIHPAF---FHSVTVNSGSKSG-MFNIHSEVRKVLSG-NQFSDT 630
Query: 436 MLIPYVPMLVPPKKWKGYNKGGYLFLPSYVMRTHGSRKQQEALKSVT--GNCMKKVFEAL 493
++ +PMLV PK W Y GG L+ ++R S + +K+ GN + +VF+ L
Sbjct: 631 IMPQSMPMLVEPKPWSSYYGGGSLYSEESLIRLKESPETSAYVKAAAKRGN-LTEVFDGL 689
Query: 494 DTLGSTKWRVNKQVLSVLESIWVSGGNIAGLVDRND-VLIPEKPLSEDMTEVQKWKWSVR 552
+ LGST W +N+++ V+ W +G + +D +P +P + D ++ ++ +
Sbjct: 690 NVLGSTPWTMNRKIFDVVSHYWNTGEEYLTIPPVSDQANLPARPETMDPRQIFEYDKAFN 749
Query: 553 KAKKINQERHSQRCDTELKLSVARRMKDEEGFYYPHNLDFRGRAYPMHPHLNHLSSDVCR 612
KA + S+RCD KL +AR E+ Y+P NLDFRGRAYP+ P LNHL D+ R
Sbjct: 750 KAAREFASNRSRRCDYNYKLEIARAYLGEK-LYFPCNLDFRGRAYPITPFLNHLGGDITR 808
Query: 613 GVLEFAEGRPLGKSGLRWLKIHLANLFSGGVEKLSHDGRLAFVENHLYEIFDSAENPING 672
+ F +G+ LGK GL WLK+ LAN++ G++K R+ FVE L + SAE+P N
Sbjct: 809 SLFLFWDGKELGKRGLEWLKVQLANVY--GIDKAPLSERIQFVEERLEDAIKSAEDPYN- 865
Query: 673 SRWWLTAEDPFQCLAACINLSEALKSSSPHSVISHLPIHQDGSCNGLQHYAALGRNTLEA 732
++WW AE P+Q L+ C L+EA K P +SHLP+HQDG+CNGLQHYAALG + A
Sbjct: 866 NKWWTKAEKPWQALSVCFELAEAYKLEDPTKFVSHLPVHQDGTCNGLQHYAALGGDVEGA 925
Query: 733 AAVNLVAGEKPADVYSEIAVRVHEIMKRDSNKDPSKHPQALLAKILIDQVDRKLVKQTVM 792
VN++ ++P DVY+ +A V E + R + + ++H AK L ++ RK+VKQTVM
Sbjct: 926 TQVNMMPRDRPQDVYTFVANLVEERL-RVAAAEGNEH-----AKFLQGKIKRKVVKQTVM 979
Query: 793 TSVYGVTFVGAREQIKRRLEEKGHITDDRQLFAAACYAAKVTLTALGEIFEAARSIMGWL 852
T+VYGVT+VGA +QIK+++ + + + + Y + ++ E+FE A I WL
Sbjct: 980 TNVYGVTYVGALQQIKKQILQ--YFDEGEDVAPKLNYLTVLVFASIRELFENAHLIQDWL 1037
Query: 853 GDCAKVIASE----------------NQPVRWTTPLGLPVVQPYCKNERHLIRTSLQVLA 896
+ A+ I+ + V WT+PLGLP VQPY + ++T +Q ++
Sbjct: 1038 AEAARRISRSVSIDYSDDNTNGREIHSSSVIWTSPLGLPCVQPYRHKKLIAVKTLVQDIS 1097
Query: 897 LQREGNLVKI--RKQRTAFPPNFVHSLDGSHMMMTAVACRDAGLHFAGL 943
+ + + RKQ FPPNF+HSLD SHM+MTA AC GLHFA +
Sbjct: 1098 VTTPTGVTSVDSRKQVAGFPPNFIHSLDASHMLMTASACGRHGLHFASV 1146
>gi|196004815|ref|XP_002112274.1| hypothetical protein TRIADDRAFT_25308 [Trichoplax adhaerens]
gi|190584315|gb|EDV24384.1| hypothetical protein TRIADDRAFT_25308, partial [Trichoplax
adhaerens]
Length = 607
Score = 399 bits (1026), Expect = e-108, Method: Compositional matrix adjust.
Identities = 224/591 (37%), Positives = 340/591 (57%), Gaps = 39/591 (6%)
Query: 361 TQAKLGSRLVELLIETAYVQHPVN-PADYSPPDVRPAFRHRFKTILKHPGQKTTKRYGVV 419
++ +LGS +VE+ + A V VN + + PAF H + + ++ G +
Sbjct: 2 SRLQLGSAIVEIFLRVAKVN--VNLMKEKAEEKFIPAFYHVYVF-------QKQRQVGFI 52
Query: 420 ECDPLVLEGLDRSAKHML-IPYVPMLVPPKKWKGYNKGGYLFLPSYVMRTHGSRKQQEAL 478
+ P V+ + K ++ +PMLVP + W ++ GGY+ P+ +MR Q+ L
Sbjct: 53 KPHPNVM----KLGKFLMETSMLPMLVPSRPWLCHHDGGYVATPAPIMRYREDCFDQDVL 108
Query: 479 KSVTGNCMKKVFEALDTLGSTKWRVNKQVLS-VLESIWVSGGNIAGLVDRNDVLIPEKPL 537
+ + ++ ++++++ LGS W+VNK+VL +E +G +I + D + +P P+
Sbjct: 109 LAKSSRKLRSIYDSINYLGSCPWKVNKRVLDKCIECFNETGSDILDIPDPRLIPMPPYPV 168
Query: 538 SEDMTEVQKWKWSV--RKAKKINQERHSQRCDTELKLSVARRMKDEEGFYYPHNLDFRGR 595
D+ +K + R+ K +E HS R D KLSVA+ +++ F+ PHN+DFRGR
Sbjct: 169 DPDIEPQEKRRIIELRRQVAKKQREHHSLRMDVLYKLSVAKHFEND-IFWLPHNMDFRGR 227
Query: 596 AYPMHPHLNHLSSDVCRGVLEFAEGRPLGKSGLRWLKIHLANLFSGGVEKLSHDGRLAFV 655
YP+ PHL+H+ +D+ R ++ FA GRPLG G W+K+HLAN+ G + K S R+ F
Sbjct: 228 VYPIPPHLSHVGNDLSRSLMLFAIGRPLGTEGFDWIKVHLANV-HGQMSKASLTDRINFT 286
Query: 656 ENHLYEIFDSAENPINGSRWWLTAEDPFQCLAACINLSEALKSSSPHSVISHLPIHQDGS 715
E+ EI DSA+NP G +WW T E P+Q LA C+ L++ + +P IS+ P+HQDG+
Sbjct: 287 ESLKNEILDSADNPFTGDKWWQTGEHPWQTLATCMELADVWRCDNPEQYISYFPVHQDGT 346
Query: 716 CNGLQHYAALGRNTLEAAAVNLVAGEKPADVYSEIAVRVHEIMKRDSNKDPSKHPQALLA 775
CNGLQHYAALGR+TL A VNLV+ P D+YS +A V E +D+ K+ A
Sbjct: 347 CNGLQHYAALGRDTLGAEQVNLVSRGIPQDIYSAVARLVEEHRAKDAKKN------NFNA 400
Query: 776 KILIDQVDRKLVKQTVMTSVYGVTFVGAREQIKRRLEEKGHITDDRQLFAAACYAAKVTL 835
L +V RK+VKQTVMT VYGVT VG REQI R+LE + ++ ++F A+ Y ++
Sbjct: 401 LWLEGKVSRKVVKQTVMTIVYGVTRVGGREQIARQLERLQELENEERIFTASQYLVRIVF 460
Query: 836 TALGEIFEAARSIMGWLGDCAKVIASENQPVRWTTPLGLPVVQPY---CKNERHLIRTSL 892
L ++F +AR I WL D A+ IAS V W TPLGLPV+QPY E H R +
Sbjct: 461 DQLSKMFYSARRIQEWLNDSARQIASAGSLVEWITPLGLPVLQPYRVPVYKEVHFNRVDV 520
Query: 893 QVLALQREGNLVKIRKQRTAFPPNFVHSLDGSHMMMTAVACRDAGLHFAGL 943
+ + KQ+ AFPPN++HSLD +HMM+T++ C+ + F +
Sbjct: 521 K----------PHVSKQKMAFPPNYIHSLDSTHMMLTSLECQASDTTFVAV 561
>gi|344307837|ref|XP_003422585.1| PREDICTED: DNA-directed RNA polymerase, mitochondrial [Loxodonta
africana]
Length = 1234
Score = 399 bits (1024), Expect = e-108, Method: Compositional matrix adjust.
Identities = 229/599 (38%), Positives = 334/599 (55%), Gaps = 38/599 (6%)
Query: 364 KLGSRLVELLIETAYVQHPVNPADYSPPDVRPAFRHRFKTILKHPGQ-KTTKRYGVVECD 422
+LG +L E+L+ ++ P + P + A +L H ++ ++ G+++
Sbjct: 569 QLGKQLAEVLVRAVHM-----PRNLGAPAGKGAGTEPLIPVLYHVYSFRSVRQIGILKPH 623
Query: 423 PLVLEGLDRSAKHMLI---PYVPMLVPPKKWKGYNKGGYLFLPSYVMR-THGSRKQQEAL 478
P + L +A+ L VPML PP W + G +L P+ +MR G+ Q+ L
Sbjct: 624 PAFSQLLAAAAEPTLTFEAAEVPMLCPPLPWTSPHSGAFLLSPAKLMRAVEGTMLHQQRL 683
Query: 479 KSVTGNCMKKVFEALDTLGSTKWRVNKQVLS-VLESIWVSGGNIAGL----VDRNDVLIP 533
+ + F+AL LG+ WRVN +VL VLE G G+ D
Sbjct: 684 EHCPPAALHGAFDALTQLGNCAWRVNGRVLDLVLELFHAHGCTRLGVPPPASDAPCPPAR 743
Query: 534 EKPLSEDMTEVQKWKWSVRKAKKINQERHSQRCDTELKLSVARRMKDEEGFYYPHNLDFR 593
P + + + V + K +E S R D +LS+A+ ++ F+ PHN+DFR
Sbjct: 744 RPPPGTPPARLAELRREVARCLKAARELRSLRADALYRLSLAQHLRHHGAFWLPHNMDFR 803
Query: 594 GRAYPMHPHLNHLSSDVCRGVLEFAEGRPLGKSGLRWLKIHLANLFSGGVEKLSHDGRLA 653
GR YP PHL+HL SD+ R +LEFA+G PLG GL WLK+HL NL +G ++ S RLA
Sbjct: 804 GRTYPCPPHLSHLGSDLARALLEFAQGCPLGPHGLDWLKLHLVNL-TGLKKRESLQARLA 862
Query: 654 FVENHLYEIFDSAENPINGSRWWLTAEDPFQCLAACINLSEALKSSSPHSVISHLPIHQD 713
F + L E+ DSA+ P+ G +WW+ A++P+Q LA C+ L+ AL+S P S +SH P+HQD
Sbjct: 863 FADQVLDEVLDSADRPMTGRKWWMEADEPWQTLACCMELARALRSPDPTSFVSHFPVHQD 922
Query: 714 GSCNGLQHYAALGRNTLEAAAVNLVAGEKPADVYSEIAVRVHEIMKRDSNKDPSKHPQAL 773
GSCNGLQHYAALGR+++ AA+VNL + P DVYS +A +V ++D+ +
Sbjct: 923 GSCNGLQHYAALGRDSVGAASVNLTPSDLPQDVYSGVAAQVEVFRRQDAEQG------VR 976
Query: 774 LAKILIDQVDRKLVKQTVMTSVYGVTFVGAREQIKRRLEEKGHITDDRQLFA--AACYAA 831
+A++L V RK+VKQTVMT VYGVT G R QI++RL E + D Q F A+ Y
Sbjct: 977 VAQVLEGFVSRKVVKQTVMTVVYGVTRYGGRLQIEKRLRE---LPDFPQEFVWEASHYLV 1033
Query: 832 KVTLTALGEIFEAARSIMGWLGDCAKVIASENQPVRWTTPLGLPVVQPYCKNERHLIRTS 891
+ +L E+F A R+I WL + A++I+ V W TPLG+P++QPY + + LI+
Sbjct: 1034 RQVFNSLQEMFSATRAIQHWLTESARLISHTGSAVEWVTPLGIPIIQPYHRISKFLIKGG 1093
Query: 892 LQVLAL-------QREGNLVKIRKQRTAFPPNFVHSLDGSHMMMTAVACRDAGLHFAGL 943
+Q + QR L KQ+ FPPNF+HSLD SHMM+TA+ C GL F +
Sbjct: 1094 IQSMTFNHSSDSSQRPNTL----KQKNGFPPNFIHSLDSSHMMLTALHCYRKGLTFVSV 1148
>gi|340380901|ref|XP_003388960.1| PREDICTED: DNA-directed RNA polymerase, mitochondrial-like
[Amphimedon queenslandica]
Length = 554
Score = 398 bits (1023), Expect = e-108, Method: Compositional matrix adjust.
Identities = 222/512 (43%), Positives = 313/512 (61%), Gaps = 22/512 (4%)
Query: 441 VPMLVPPKKWKGYNKGGYLFLPSYVMRTH-GSRKQQEALKSVTGNCMKKVFEALDTLGST 499
+PM VPP+ W G +L PS V+RTH S QQ LK+ + + V ++L+ L
Sbjct: 10 IPMRVPPQPWTDATNGAFLLTPSSVVRTHYDSFHQQLLLKA--ADSLSPVLDSLNYLSLY 67
Query: 500 KWRVNKQVLSVLESIWVSGGNIAGLVDRNDVLIPEKPLSEDMTEV----QKWKWSVRKA- 554
WRVN ++L + I+ GG+ + + +++ +KPL + + ++ +K + R A
Sbjct: 68 PWRVNNRILDMAIDIFNQGGDKSLDIPTDELF--DKPLPKYIKDIDEETRKKIYKERFAI 125
Query: 555 KKINQERHSQRCDTELKLSVARRMKDEEGFYYPHNLDFRGRAYPMHPHLNHLSSDVCRGV 614
KK N E S + LS+ +D F+ PHN+DFRGR YP+ PHL+H+SSD+ R +
Sbjct: 126 KKENAENFSLKMTLLYNLSMCNHFRDCL-FWLPHNMDFRGRVYPIPPHLSHMSSDLSRSL 184
Query: 615 LEFAEGRPLGKSGLRWLKIHLANLFSGGVEKLSHDGRLAFVENHLYEIFDSAENPINGSR 674
L+F G+PLG+ GL WLKIH+A L G K S + RL + ++ + +I DSA+ P+ G
Sbjct: 185 LQFGVGQPLGRRGLEWLKIHIATL-HGAKSKSSLNERLEYTDSIIDDIADSADKPLEGRG 243
Query: 675 WWLTAEDPFQCLAACINLSEALKSSSPHSVISHLPIHQDGSCNGLQHYAALGRNTLEAAA 734
WW TA+ P+Q LAA + L +AL+S P + ISH IHQDGSCNGLQHYAA+GR+ A
Sbjct: 244 WWRTADVPWQTLAASMELMDALRSGDPENFISHTTIHQDGSCNGLQHYAAMGRDVYGAHQ 303
Query: 735 VNLVAGEKPADVYSEIAVRVHEIMKRDSNKDPSKHPQALLAKILIDQVDRKLVKQTVMTS 794
VNLV EKPA++Y+E+A V E K D+ D + +AKIL +V RK+VKQTVMT
Sbjct: 304 VNLVPSEKPANLYAEVAKLVDEKRKVDATSDKNVE----IAKILEGKVHRKVVKQTVMTV 359
Query: 795 VYGVTFVGAREQIKRRLEEKGHITDDRQLFAAACYAAKVTLTALGEIFEAARSIMGWLGD 854
VYGVTFVG R QI+++L KG I D+ LF A+ Y + +L E+FE +R I WL
Sbjct: 360 VYGVTFVGGRLQIEKQL--KGTIP-DKHLFEASSYLCGLVFESLSEMFERSRKIQDWLAS 416
Query: 855 CAKVIASENQPVRWTTPLGLPVVQPYCKNERHLIRTSLQVLALQREGNLV---KIRKQRT 911
A+ IA P +W TP+GLPVVQPY + I + +Q L L ++ KQR+
Sbjct: 417 SARKIALAGHPTQWVTPIGLPVVQPYHRKSIKKITSKIQRLQLLNNSDITFPPNPVKQRS 476
Query: 912 AFPPNFVHSLDGSHMMMTAVACRDAGLHFAGL 943
A PPNFVHSLD +HMM+TA+ C+ +G+ F +
Sbjct: 477 AMPPNFVHSLDSTHMMLTALDCQKSGIPFVAV 508
>gi|167524739|ref|XP_001746705.1| hypothetical protein [Monosiga brevicollis MX1]
gi|163774975|gb|EDQ88601.1| predicted protein [Monosiga brevicollis MX1]
Length = 1253
Score = 398 bits (1022), Expect = e-108, Method: Compositional matrix adjust.
Identities = 245/654 (37%), Positives = 362/654 (55%), Gaps = 79/654 (12%)
Query: 334 NSLIKSKRVMEAQKLLKNEET------KPWGRDTQAKLGSRLVELLIETAYVQHPVNPAD 387
N+L + R +E + +K ++ PW G+ L+E++++T+ H N
Sbjct: 140 NALADTWRRVEQRLGIKTDDQYDSDLLSPWPIPVLLACGTSLLEVVLQTSSTGHLPNH-- 197
Query: 388 YSPPDVRP--AFRHRFKTILKHPGQKTTKRYGVVECDPLVLEGLDRSA--KHMLIP---- 439
D +P AF H + KR G + C LVL+ + A + +P
Sbjct: 198 ----DKKPVAAFYHMMQL-------DGVKRVGYIRCHKLVLDRVSGQASDRGSCVPSKVA 246
Query: 440 ----YVPMLVPPKKWKGYNKGGYLFLPSYVMRTHGSRKQQEALKSVTGNCMKKVFEALDT 495
+PM +PP+ W KG YL PS +MRT Q AL S + + +VF A+
Sbjct: 247 IDASQLPMTIPPRPWTSVRKGAYLICPSAIMRTGDWAFQHFALLSEATHNLARVFNAISA 306
Query: 496 LGSTKWRVNKQVLSVLESIWVSGGNIAGLVDRNDVLIPEKPLSE-DMTEVQKWKWSVRKA 554
L +T W+VN QVL V+ ++ S L + P + E D T+ + S++
Sbjct: 307 LSATAWKVNGQVLRVVTELFHSEDGYDDLG-----IAPFRVNYEVDKTDPK----SLKTH 357
Query: 555 KKINQERHSQRCDTELKLSVARRMKDEEGFYYPHNLDFRGRAYPMHPHLNHLSSDVCRGV 614
KK++ E HS R D L+L VA + +++ F+ PHNLDFRGRAY M P+L H+ +D+ RG+
Sbjct: 358 KKLSNEAHSLRSDLHLRLMVAHWLGEKQ-FWLPHNLDFRGRAYSMPPYLTHIGNDMARGL 416
Query: 615 LEFAEGRPLGKSGLRWLKIHLANLFSGGVEKLSHDGRLAFVENHLYEIFDSAENPING-- 672
L FAE +PLG G RWLK+HLAN++ G +KL D R F E+++ + SA+ P+ G
Sbjct: 417 LTFAETKPLGADGWRWLKVHLANVY--GKDKLPMDERAKFAEDNMENVLSSADRPLAGLL 474
Query: 673 ----SRWWLTAEDPFQCLAACINLSEALKSSSPHSVISHLPIHQDGSCNGLQHYAALGRN 728
WWL E+P+Q LA C+ L+ A +S +P + S P+HQDG+CNGLQHYAA+G +
Sbjct: 475 EPGEKSWWLKGENPWQVLATCMELAAAYRSGNPEAYESGFPVHQDGTCNGLQHYAAMGGD 534
Query: 729 TLEAAAVNLVA---GEKPADVYSEIAVRVHEIMKRDSN-----------KDPSKHPQALL 774
A VN++ ++P DVYS +A +V E++ + KDP ++ Q L
Sbjct: 535 IAGARHVNVIPTPEDDRPQDVYSAVAAKVDELLHMQATTGNFEHFPREVKDPERYKQ--L 592
Query: 775 AKILIDQ--VDRKLVKQTVMTSVYGVTFVGAREQIKRRLEEKGHITDDRQLFAAACYAAK 832
A++L++Q + RK+VKQTVMT+VYGVT++G R+QI R+L+ ++ D C A+
Sbjct: 593 ARLLMEQGPMKRKIVKQTVMTNVYGVTYIGGRDQILRQLKAHDYVPD---ALMKDC-ASY 648
Query: 833 VTLTALGEIFEAARSIMGWLGDCAKVIASENQPVRWTTPLGLPVVQPYCKNERHLIRTSL 892
+TL IF A+ I WL A++IAS +PV W TPLGLP++QPY + I TSL
Sbjct: 649 LTLL----IFVNAQKIQKWLSRQARMIASSGEPVSWVTPLGLPIIQPYHMAAKRQITTSL 704
Query: 893 QVLALQREGNLVK---IRKQRTAFPPNFVHSLDGSHMMMTAVACRDAGLHFAGL 943
Q + + +K + KQ +AFPPNFVHSLD +HM+ TA AC GL FA +
Sbjct: 705 QSVMTTVTTSPIKPPNVVKQSSAFPPNFVHSLDSTHMLQTAAACTKDGLTFAAI 758
>gi|363743780|ref|XP_418204.3| PREDICTED: DNA-directed RNA polymerase, mitochondrial [Gallus gallus]
Length = 1236
Score = 396 bits (1018), Expect = e-107, Method: Compositional matrix adjust.
Identities = 226/605 (37%), Positives = 343/605 (56%), Gaps = 45/605 (7%)
Query: 357 WGRDTQAKLGSRLVELLIETAYV-QHPVNPADYSPPDVRPAFRHRFKTILKHPGQKTTKR 415
W +LG L+E+L+ V ++ +NP P + P H + +++ +
Sbjct: 576 WPYVLLMRLGMYLLEILVHAVKVPRNTLNPR--LPSKLIPVLYHIYSF-------RSSWQ 626
Query: 416 YGVVECDPLVLEGLDRSAKHMLI---PYVPMLVPPKKWKGYNKGGYLFLPSYVMR-THGS 471
G+++ P+ + + +A+ ML +PML PP W + G ++ + +MR G+
Sbjct: 627 VGLIKPHPIFSQIVSDAAETMLTFNSSAIPMLCPPVPWTSPHFGAFVLSDTKLMRYVDGA 686
Query: 472 RKQQEALKSVTGNCMKKVFEALDTLGSTKWRVNKQVLSVLESIWVSGGNIAGLVDRNDVL 531
+ Q+ L + V +AL+ LG+ W++N+ VL ++ SI+ GN ++ D+
Sbjct: 687 IQHQQLLDQCPQVNLHPVLDALNQLGNCAWKINQPVLDIIISIFNDKGN-----EKLDI- 740
Query: 532 IPEKPLSEDMTEV----------QKWKWSVRKAKKINQERHSQRCDTELKLSVARRMKDE 581
P+SE + K + KK E HS R D KLS+A ++D+
Sbjct: 741 --PPPVSEAPKPPVSPSSSSALHKSQKHELLLCKKKAAEMHSLRMDALYKLSIANYVRDK 798
Query: 582 EGFYYPHNLDFRGRAYPMHPHLNHLSSDVCRGVLEFAEGRPLGKSGLRWLKIHLANLFSG 641
F++PHN+DFRGR YP P+ NHL +DV R +L FAEGRPLG GL WLKIHL NL +G
Sbjct: 799 -VFWFPHNMDFRGRTYPCPPYFNHLGNDVTRAILLFAEGRPLGPKGLDWLKIHLINL-TG 856
Query: 642 GVEKLSHDGRLAFVENHLYEIFDSAENPINGSRWWLTAEDPFQCLAACINLSEALKSSSP 701
+K + RL + + EI DSA++P+ G +WW+ ++P+Q LA C+ +++A +S P
Sbjct: 857 LKKKNALQERLDYANEIMEEILDSADHPLTGRKWWMNTDEPWQVLACCMEIAKASRSPDP 916
Query: 702 HSVISHLPIHQDGSCNGLQHYAALGRNTLEAAAVNLVAGEKPADVYSEIAVRVHEIMKRD 761
+ ISH P+HQDGSCNGLQHYAALGR+ + A +VNL+ P DVYS +A +V E K+D
Sbjct: 917 AAFISHFPVHQDGSCNGLQHYAALGRDLIGAISVNLMPCNVPQDVYSAVAQQVEEFRKKD 976
Query: 762 SNKDPSKHPQALLAKILIDQVDRKLVKQTVMTSVYGVTFVGAREQIKRRLEEKGHITDDR 821
+ + +A++L + RK+VKQTVMT VYGVT G R Q+++RL+E +
Sbjct: 977 AEEG------LRIAQVLEGFIGRKVVKQTVMTVVYGVTRYGGRLQMEKRLKEIEF--PEE 1028
Query: 822 QLFAAACYAAKVTLTALGEIFEAARSIMGWLGDCAKVIASENQPVRWTTPLGLPVVQPYC 881
L+ A+ Y K + E+F A R I WL + AK+IA + V W TPLGLP+VQPY
Sbjct: 1029 YLWEASHYLVKQVFNGIKEMFSATRDIQNWLTESAKLIAQSGRTVEWVTPLGLPIVQPYY 1088
Query: 882 KNERHLIRTSLQVLALQREGNLVK---IRKQRTAFPPNFVHSLDGSHMMMTAVACRDAGL 938
+ ++ S+Q L+++ N + KQ+ AFPPNF+HSLD +HMM+TA+ C GL
Sbjct: 1089 RIRPTVLTCSMQNLSVKNSSNNNQKPDTVKQKNAFPPNFIHSLDSTHMMLTALHCFRQGL 1148
Query: 939 HFAGL 943
F +
Sbjct: 1149 TFVSV 1153
>gi|403309070|ref|XP_003944953.1| PREDICTED: DNA-directed RNA polymerase, mitochondrial [Saimiri
boliviensis boliviensis]
Length = 1233
Score = 395 bits (1016), Expect = e-107, Method: Compositional matrix adjust.
Identities = 235/620 (37%), Positives = 354/620 (57%), Gaps = 36/620 (5%)
Query: 340 KRVMEAQKLLKNEETKPWGRDTQAKLGSRLVELLIETAYVQHPVNPADYSPPDVRPAFRH 399
++ +A +L+ + +PW Q +LGS L E+L VQ P P+D + +P
Sbjct: 548 RQYWDALGVLEPPQEQPWPLPVQVELGSLLAEIL-----VQAPKMPSDLT----KPRGDS 598
Query: 400 RFKTILKHPGQ-KTTKRYGVVECDPLVLEGLDRSAKHMLI---PYVPMLVPPKKWKGYNK 455
R +L H + + G ++ P +E L +A+ L VPML PP W +
Sbjct: 599 RLVPVLYHVYSFRNVYQIGFLKPHPAYVELLATAAEPTLTFEAVDVPMLCPPLPWTSPHT 658
Query: 456 GGYLFLPSYVMR-THGSRKQQEALKSVTGNCMKKVFEALDTLGSTKWRVNKQVLS-VLES 513
G +L P+ +MR G+ Q L+ + + L LG+ WRVN +VL VLE
Sbjct: 659 GAFLLSPTKLMRAVDGTMHHQRLLERCPPAALHGALDTLTQLGNCAWRVNGRVLDLVLEL 718
Query: 514 IWVSGGNIAGLVDR-NDVLIPEK---PLSEDMTEVQKWKWSVRKAKKINQERHSQRCDTE 569
G G+ R ++V P + P S + + + + + + K +E HS R +
Sbjct: 719 FQEEGCPKLGVPARPSEVAAPHEAALPSSTGLADKAELRRELARCLKEAREMHSLRTEAL 778
Query: 570 LKLSVARRMKDEEGFYYPHNLDFRGRAYPMHPHLNHLSSDVCRGVLEFAEGRPLGKSGLR 629
+LS+A+ +++ F+ PHN+DFRGR YP PH NHL +D+ R +LEFA+GRPLG GL
Sbjct: 779 YRLSLAQHLRNRI-FWLPHNMDFRGRTYPCPPHFNHLGNDLARALLEFAQGRPLGPHGLD 837
Query: 630 WLKIHLANLFSGGVEKLSHDGRLAFVENHLYEIFDSAENPINGSRWWLTAEDPFQCLAAC 689
WLKIH+ NL +G ++ R AF E + +I DSA++P+ G +WW+ +E+P+Q LA C
Sbjct: 838 WLKIHVVNL-TGLKKREPLQARRAFAEEVMGDILDSADHPMTGRKWWMDSEEPWQTLACC 896
Query: 690 INLSEALKSSSPHSVISHLPIHQDGSCNGLQHYAALGRNTLEAAAVNLVAGEKPADVYSE 749
+ +++A+++S P + +SHLP+HQDGSCNGLQHYAALGR+++ AA+VNL E P DVYS+
Sbjct: 897 MEIAKAVRTSDPAAYVSHLPVHQDGSCNGLQHYAALGRDSVGAASVNLEPAEVPQDVYSD 956
Query: 750 IAVRVHEIMKRDSNKDPSKHPQALLAKILIDQVDRKLVKQTVMTSVYGVTFVGAREQIKR 809
+A +V D+ + +A++L V RK+VKQTVMT VYGVT G R QI++
Sbjct: 957 VAAQVEFFRSLDARRG------VRVAQVLEGFVTRKVVKQTVMTVVYGVTRYGGRLQIEK 1010
Query: 810 RLEEKGHITDDRQ--LFAAACYAAKVTLTALGEIFEAARSIMGWLGDCAKVIASENQPVR 867
RL E ++D Q L+ A+ Y + +L E+F +R+I WL + A++I+ V
Sbjct: 1011 RLRE---LSDFPQEFLWEASQYLVRQVFRSLQEMFSGSRAIQHWLTESARLISHMGSAVE 1067
Query: 868 WTTPLGLPVVQPYCKNER-HLIRTSLQVLALQ---REGNLVKIRKQRTAFPPNFVHSLDG 923
W TPLG+P++QPY + + R+ LQ ++ G RKQR FPPNF+HSLD
Sbjct: 1068 WVTPLGIPIIQPYHQAIKIKQGRSGLQSVSYSVNADSGLKPNKRKQRNGFPPNFIHSLDS 1127
Query: 924 SHMMMTAVACRDAGLHFAGL 943
+HMM+TA+ C GL F +
Sbjct: 1128 THMMLTALHCYREGLIFVSV 1147
>gi|148699722|gb|EDL31669.1| polymerase (RNA) mitochondrial (DNA directed), isoform CRA_d [Mus
musculus]
Length = 1144
Score = 395 bits (1015), Expect = e-107, Method: Compositional matrix adjust.
Identities = 220/541 (40%), Positives = 318/541 (58%), Gaps = 25/541 (4%)
Query: 417 GVVECDPLVLEGLDRSAKHMLI---PYVPMLVPPKKWKGYNKGGYLFLPSYVMR-THGSR 472
G+++ P L+ +A+ L VPML PP W + G YL + +MR T G+
Sbjct: 527 GILKPHPAFTHLLETAAEPTLTFETTEVPMLCPPLPWTSLHSGAYLLSSTKLMRATEGTT 586
Query: 473 KQQEALKSVTGNCMKKVFEALDTLGSTKWRVNKQVLSVLESIWVSGGNIAGLVD--RNDV 530
+ Q L+ + +AL LG+ WRVN +L ++ I+ G + V R++
Sbjct: 587 QHQRLLEQCPPAQLHGPLDALTQLGNCAWRVNGHLLDLVLQIFRDKGCMPLGVPPPRSEA 646
Query: 531 LIPEK-PLSEDMTEVQK--WKWSVRKAKKINQERHSQRCDTELKLSVARRMKDEEGFYYP 587
P + L T V K + + + K+ +E HS R + +LS+A+ ++ F+ P
Sbjct: 647 PRPARYQLPPGSTPVHKSELRKELARCLKVAREMHSLRSEALYRLSLAQHLR-HRVFWLP 705
Query: 588 HNLDFRGRAYPMHPHLNHLSSDVCRGVLEFAEGRPLGKSGLRWLKIHLANLFSGGVEKLS 647
HN+DFRGR YP PH NHL SD+ R +LEFAEGRPLG GL WLKIHL NL +G + S
Sbjct: 706 HNMDFRGRTYPCPPHFNHLGSDLARALLEFAEGRPLGPRGLDWLKIHLINL-TGLKKGDS 764
Query: 648 HDGRLAFVENHLYEIFDSAENPINGSRWWLTAEDPFQCLAACINLSEALKSSSPHSVISH 707
RLAF + + EI DSA+NP+ G +WW+ A++P+Q LA C+ ++ A++S P + ISH
Sbjct: 765 LRMRLAFADEVMEEILDSADNPLTGRKWWMEADEPWQTLACCMEVAHAVRSPDPAAYISH 824
Query: 708 LPIHQDGSCNGLQHYAALGRNTLEAAAVNLVAGEKPADVYSEIAVRVHEIMKRDSNKDPS 767
LP+HQDGSCNGLQHYAALGR+++ AA+VNL + P DVY E+A +V E ++D+ +
Sbjct: 825 LPVHQDGSCNGLQHYAALGRDSVGAASVNLTPSDLPQDVYREVATQVEEFRQQDAKEG-- 882
Query: 768 KHPQALLAKILIDQVDRKLVKQTVMTSVYGVTFVGAREQIKRRLEEKGHITDDRQLFA-- 825
+A++L + RK+VKQTVMT VYGVT G R QI++RL E ++D Q F
Sbjct: 883 ----LRVAQVLEGFISRKVVKQTVMTVVYGVTRYGGRLQIEKRLRE---LSDFPQEFVWE 935
Query: 826 AACYAAKVTLTALGEIFEAARSIMGWLGDCAKVIASENQPVRWTTPLGLPVVQPYCKNER 885
A+ Y + +L E+F + R+I WL + A +I+ PV W TPLG+P++QPY + +
Sbjct: 936 ASHYLVRQVFKSLQEMFTSTRAIQHWLTESANLISHAGWPVEWVTPLGIPIIQPYHRESK 995
Query: 886 HLIRTSLQVLALQR---EGNLVKIRKQRTAFPPNFVHSLDGSHMMMTAVACRDAGLHFAG 942
++ LQ + L E KQ+ FPPNF+HSLD SHMM+TA+ C GL F
Sbjct: 996 VQVKGGLQSITLTSSVDESQKPNTLKQKNGFPPNFIHSLDSSHMMLTALHCYRKGLIFVS 1055
Query: 943 L 943
+
Sbjct: 1056 V 1056
>gi|156386128|ref|XP_001633765.1| predicted protein [Nematostella vectensis]
gi|156220840|gb|EDO41702.1| predicted protein [Nematostella vectensis]
Length = 496
Score = 395 bits (1014), Expect = e-107, Method: Compositional matrix adjust.
Identities = 207/500 (41%), Positives = 302/500 (60%), Gaps = 19/500 (3%)
Query: 441 VPMLVPPKKWKGYNKGGYLFLPSYVMR-THGSRKQQEALKSVTGNC--MKKVFEALDTLG 497
+PMLVPP+ W+G GG+L P +MR T + + + + V ++L+ LG
Sbjct: 6 LPMLVPPRPWRGIRDGGFLIQPVQLMRSTQEMDDNHDHMLRYKCDSRELSAVLDSLNYLG 65
Query: 498 STKWRVNKQVLSVLESIWVSGGNIAGLVDRNDVLIPEKPLSEDMTEVQKWKWSV---RKA 554
+ W+ N ++L + ++ G+ + V + +PL + + E + + R+A
Sbjct: 66 TCAWKTNNRILDLAIQVFNDQGDDTLAIPGPVVPLELEPLEKSVKEPEARMKQIQEHRRA 125
Query: 555 KKINQERHSQRCDTELKLSVARRMKDEEGFYYPHNLDFRGRAYPMHPHLNHLSSDVCRGV 614
+K+ +E +S R KLSVA +D F+ P N+DFRGR YP+ PH H+ D+ RG+
Sbjct: 126 RKLAREHYSLRMTALYKLSVANHFRDRV-FWLPLNMDFRGRVYPIPPHCCHVGDDLSRGM 184
Query: 615 LEFAEGRPLGKSGLRWLKIHLANLFSGGVEKLSHDGRLAFVENHLYEIFDSAENPINGSR 674
L+FAEG PLG GLRWLKIHLANL+ G +K S D R+ + + + E+ DSA+NP+ G+R
Sbjct: 185 LQFAEGVPLGPDGLRWLKIHLANLY-GAKKKSSLDERVEYTDQMMSEVLDSADNPLTGAR 243
Query: 675 WWLTAEDPFQCLAACINLSEALKSSSPHSVISHLPIHQDGSCNGLQHYAALGRNTLEAAA 734
WW+ ++P+Q LA C+ +++A++S P +SH P+HQDGSCNGLQHYAALG + A
Sbjct: 244 WWMHGDEPWQVLATCMEIAKAVRSPDPAQYVSHQPVHQDGSCNGLQHYAALGHDRYGARQ 303
Query: 735 VNLVAGEKPADVYSEIAVRVHEIMKRDSNKDPSKHPQALLAKILIDQVDRKLVKQTVMTS 794
VNL+ ++P DVY+E+A V E D+ + +A +L D+V R++VKQTVMT
Sbjct: 304 VNLIPADRPQDVYAEVAKLVEEARLHDAEQGHR------IATLLEDKVTRRVVKQTVMTI 357
Query: 795 VYGVTFVGAREQIKRRLEEKGHITDDRQLFAAACYAAKVTLTALGEIFEAARSIMGWLGD 854
VYGVTFVG R QI+R+L++ D+R LF A+ Y ++G++F A++I W
Sbjct: 358 VYGVTFVGGRLQIERQLKDLD--LDERVLFEASAYLVHKVFASIGQMFTRAKAIQDWFAL 415
Query: 855 CAKVIASENQPVRWTTPLGLPVVQPYCKNERHLIRTSLQVLALQREGNLVKI---RKQRT 911
A IA V W TPL L V QPYCK I+T LQ + + +G + + RKQR
Sbjct: 416 SATHIAYTGHCVDWYTPLSLYVCQPYCKKAVKTIKTRLQGIEIPTQGFAMSVPDSRKQRA 475
Query: 912 AFPPNFVHSLDGSHMMMTAV 931
AFPPNFVHSLD +HMM+TAV
Sbjct: 476 AFPPNFVHSLDSTHMMLTAV 495
>gi|326934436|ref|XP_003213296.1| PREDICTED: DNA-directed RNA polymerase, mitochondrial-like [Meleagris
gallopavo]
Length = 1203
Score = 395 bits (1014), Expect = e-107, Method: Compositional matrix adjust.
Identities = 223/605 (36%), Positives = 344/605 (56%), Gaps = 45/605 (7%)
Query: 357 WGRDTQAKLGSRLVELLIETAYV-QHPVNPADYSPPDVRPAFRHRFKTILKHPGQKTTKR 415
W +LG L+E+L+ V ++ +NP P + P H + +++ +
Sbjct: 543 WPYVLLMRLGMYLLEILVHAVKVPRNTLNPR--LPSKLIPVLYHIYSF-------RSSWQ 593
Query: 416 YGVVECDPLVLEGLDRSAKHMLI---PYVPMLVPPKKWKGYNKGGYLFLPSYVMR-THGS 471
G+++ P+ + + +A+ ML +PML PP W + G ++ + +MR G+
Sbjct: 594 VGLIKPHPIFSQIVSDAAEAMLTFNSSAIPMLCPPVPWTSPHFGAFVLGDTKLMRYVDGA 653
Query: 472 RKQQEALKSVTGNCMKKVFEALDTLGSTKWRVNKQVLSVLESIWVSGGNIAGLVDRNDVL 531
+ Q+ L + V +AL+ LG+ W++N+ VL ++ SI+ GN ++ D+
Sbjct: 654 IQHQQLLDQCPQXNLHPVLDALNQLGNCAWKINQPVLDIIISIFNDKGN-----EKLDI- 707
Query: 532 IPEKPLSEDMTEV----------QKWKWSVRKAKKINQERHSQRCDTELKLSVARRMKDE 581
P+SE + K + KK E HS R D KLS+A ++D+
Sbjct: 708 --PPPVSEAPKPPVSPSSSSALHKSQKHELLLCKKKAAEMHSLRMDALYKLSIANYVRDK 765
Query: 582 EGFYYPHNLDFRGRAYPMHPHLNHLSSDVCRGVLEFAEGRPLGKSGLRWLKIHLANLFSG 641
F++PHN+DFRGR YP P+ NHL +DV R +L FAEGRPLG GL WLKIHL NL +G
Sbjct: 766 -VFWFPHNMDFRGRTYPCPPYFNHLGNDVTRAILLFAEGRPLGPKGLDWLKIHLINL-TG 823
Query: 642 GVEKLSHDGRLAFVENHLYEIFDSAENPINGSRWWLTAEDPFQCLAACINLSEALKSSSP 701
+K + RL + + EI DSA++P+ G +WW+ ++P+Q LA C+ +++A +S +P
Sbjct: 824 LKKKNALQERLDYANEIMEEILDSADHPLTGRKWWMNTDEPWQVLACCMEIAKASRSPNP 883
Query: 702 HSVISHLPIHQDGSCNGLQHYAALGRNTLEAAAVNLVAGEKPADVYSEIAVRVHEIMKRD 761
+ +SH P+HQDGSCNGLQHYAALGR+ + A +VNL+ P DVYS +A +V E K+D
Sbjct: 884 AAFVSHFPVHQDGSCNGLQHYAALGRDLIGAISVNLMPCSVPQDVYSAVAQQVEEFRKKD 943
Query: 762 SNKDPSKHPQALLAKILIDQVDRKLVKQTVMTSVYGVTFVGAREQIKRRLEEKGHITDDR 821
+ + +A++L + RK+VKQTVMT VYGVT G R Q+++RL+E +
Sbjct: 944 AEEG------LRIAQVLEGFIGRKVVKQTVMTVVYGVTRYGGRLQMEKRLKEIEF--PEE 995
Query: 822 QLFAAACYAAKVTLTALGEIFEAARSIMGWLGDCAKVIASENQPVRWTTPLGLPVVQPYC 881
++ A+ Y K + E+F A R I WL + AK+IA + V W TPLGLP+VQPY
Sbjct: 996 YIWEASHYLVKQVFNGIKEMFSATRDIQNWLTESAKLIAQSGRTVEWVTPLGLPIVQPYY 1055
Query: 882 KNERHLIRTSLQVLALQREGNLVK---IRKQRTAFPPNFVHSLDGSHMMMTAVACRDAGL 938
+ ++ ++Q L+++ N + KQ+ AFPPNF+HSLD +HMM+TA+ C GL
Sbjct: 1056 RIRPTVLTCNMQNLSVKNSSNNNQKPDTVKQKNAFPPNFIHSLDSTHMMLTALHCFRQGL 1115
Query: 939 HFAGL 943
F +
Sbjct: 1116 TFVSV 1120
>gi|456754161|gb|JAA74232.1| polymerase (RNA) mitochondrial (DNA directed) [Sus scrofa]
Length = 1219
Score = 394 bits (1013), Expect = e-107, Method: Compositional matrix adjust.
Identities = 230/627 (36%), Positives = 350/627 (55%), Gaps = 45/627 (7%)
Query: 340 KRVMEAQKLLKNEETKPWGRDTQAKLGSRLVELLIETAYVQHPVNPADYSPPD---VRPA 396
++ EA L + + +PW +LG RL E+L++ V+ P N A +P D + P
Sbjct: 532 RQYWEALGLPEYPQEQPWSLSVLVQLGKRLAEMLVQA--VRMPSNLA--TPRDSNTLIPV 587
Query: 397 FRHRFKTILKHPGQKTTKRYGVVECDPLVLEGLDRSAKHMLI---PYVPMLVPPKKWKGY 453
H + ++ ++ G+++ P + L+ +A+ L VPML PP W
Sbjct: 588 LYHVYSF-------RSFRQIGILKPHPAFRQLLETAAEGTLTFESTEVPMLCPPLPWTSP 640
Query: 454 NKGGYLFLPSYVMRT-HGSRKQQEALKSVTGNCMKKVFEALDTLGSTKWRVNKQVLSVLE 512
+ G +L P+ +MR+ G+++ Q L+ + +AL LG+ W+VN VL ++
Sbjct: 641 HSGAFLLSPTKMMRSVEGTQQHQVLLERCRPAELHGALDALTQLGNCAWQVNGPVLDLVL 700
Query: 513 SIWVSGGNIAGLVDRNDVLIPEKP---------LSEDMTEVQKWKWSVRKAK--KINQER 561
++ + G V + P P L ++ QK + A+ K+ +E
Sbjct: 701 ELFNNKGCPHLGVPAPPLEAPRPPEGRQAPDACLQPNVPPTQKAELRRELARRLKMAREM 760
Query: 562 HSQRCDTELKLSVARRMKDEEGFYYPHNLDFRGRAYPMHPHLNHLSSDVCRGVLEFAEGR 621
HS R + +LS+A+ ++ F+ PHN+DFRGR YP PH NHL SD+ R +LEFA+GR
Sbjct: 761 HSLRTEALYRLSMAQHLRGRI-FWLPHNMDFRGRTYPFPPHFNHLGSDLARALLEFAQGR 819
Query: 622 PLGKSGLRWLKIHLANLFSGGVEKLSHDGRLAFVENHLYEIFDSAENPINGSRWWLTAED 681
PLG GL WLKIHL NL +G + S R + + +I DSA+ P+ G +WW+ A++
Sbjct: 820 PLGPQGLNWLKIHLVNL-TGLKKHESLQARRDLADELMEDILDSADRPMTGRKWWMEADE 878
Query: 682 PFQCLAACINLSEALKSSSPHSVISHLPIHQDGSCNGLQHYAALGRNTLEAAAVNLVAGE 741
P+Q LA C+ ++ A+++ P + +SH P+HQDGSCNGLQHYAALGR++ AA+VNL+ +
Sbjct: 879 PWQTLACCMEIARAVRAPDPTAYVSHFPVHQDGSCNGLQHYAALGRDSAGAASVNLMPSD 938
Query: 742 KPADVYSEIAVRVHEIMKRDSNKDPSKHPQALLAKILIDQVDRKLVKQTVMTSVYGVTFV 801
P DVYS +A +V ++D+ + +A++L + RK+VKQTVMT VYGVT
Sbjct: 939 LPQDVYSGVAAQVEVFRRQDAEQG------MRVAQVLEGFISRKVVKQTVMTVVYGVTRY 992
Query: 802 GAREQIKRRLEEKGHITDDRQLFA--AACYAAKVTLTALGEIFEAARSIMGWLGDCAKVI 859
G R QI+RRL E + D Q F A+ Y + +L E+F RSI WL D A++I
Sbjct: 993 GGRLQIERRLRE---LQDFPQEFVWEASHYLVRQVFNSLQEMFSGTRSIQRWLTDSARLI 1049
Query: 860 ASENQPVRWTTPLGLPVVQPYCKNERHLIRTSLQVLALQREGNLVK---IRKQRTAFPPN 916
A V W TPLG+P++QPY ++ + I+ LQ L+ + + KQ+ FPPN
Sbjct: 1050 AHMGSAVEWVTPLGIPIIQPYHRDSKVTIKGGLQNLSFNSSVDTSQKPNTLKQKNGFPPN 1109
Query: 917 FVHSLDGSHMMMTAVACRDAGLHFAGL 943
F+HSLD SHMM+TA+ C GL F +
Sbjct: 1110 FIHSLDSSHMMLTALHCYRKGLTFVSV 1136
>gi|395831257|ref|XP_003788721.1| PREDICTED: DNA-directed RNA polymerase, mitochondrial [Otolemur
garnettii]
Length = 1227
Score = 394 bits (1012), Expect = e-106, Method: Compositional matrix adjust.
Identities = 235/608 (38%), Positives = 351/608 (57%), Gaps = 45/608 (7%)
Query: 355 KPWGRDTQAKLGSRLVELLIETAYVQHPVNPADYSPPDVRPAFRHRFKTILKHPGQ-KTT 413
+PW +LG +L E+L++ VQ P + A P R +L H ++
Sbjct: 563 QPWPVPVLLQLGRQLAEILVQA--VQMPGSLAA-------PQGSCRLIPVLYHVYSFRSY 613
Query: 414 KRYGVVECDPLVLEGLDRSAKHMLI---PYVPMLVPPKKWKGYNKGGYLFLPSYVMR-TH 469
++ G+++ P ++ L ++A+ L VPML PP W + G +L P+ +MR
Sbjct: 614 RQIGILKPHPAFVQLLAKAAEPTLTFETVDVPMLCPPLPWTSPHSGAFLLSPTKLMRAVE 673
Query: 470 GSRKQQEALKSVTGNCMKKVFEALDTLGSTKWRVNKQVLS-VLESIWVSGGNIAGLVD-- 526
G+ + Q L+ + +AL LG+ WRVN +VL VLE G + G+
Sbjct: 674 GTTQHQRLLERCPPAELHGALDALTQLGNCAWRVNGRVLDLVLELFRGKGCSHLGVPPPA 733
Query: 527 RNDVLIPEKPLSEDMTEVQK--WKWSVRKAKKINQERHSQRCDTELKLSVARRMKDEEGF 584
PE L D +K + + + K+ +E HS R D +LS+A+ ++ F
Sbjct: 734 SEAPRPPEGHLPPDAPPARKAELRRELARCLKVAREMHSLRADALYRLSLAQHLR-HHIF 792
Query: 585 YYPHNLDFRGRAYPMHPHLNHLSSDVCRGVLEFAEGRPLGKSGLRWLKIHLANLFSGGVE 644
+ PHN+DFRGR YP PH NHL SD+ R +LEFAEGRPLG GL WLKIHLANL +G +
Sbjct: 793 WLPHNMDFRGRTYPCPPHFNHLGSDLARALLEFAEGRPLGPHGLDWLKIHLANL-TGLKK 851
Query: 645 KLSHDGRLAFVENHLYEIFDSAENPINGSRWWLTAEDPFQCLAACINLSEALKSSSPHSV 704
+ S RLAF + + +I DSA+ P+ G +WW+ A++P+Q LA C+ ++ A+++ +P +
Sbjct: 852 RASLHERLAFADEVMDDILDSADQPMMGRKWWMGADEPWQALACCMEIARAVRTPNPATY 911
Query: 705 ISHLPIHQDGSCNGLQHYAALGRNTLEAAAVNLVAGEKPADVYSEIAVRVHEIMKRDSNK 764
+SHLP+HQDGSCNGLQHYAALGR+++ AA+VNL+ + P DVYS +A +V EI +R K
Sbjct: 912 VSHLPVHQDGSCNGLQHYAALGRDSVGAASVNLMPLDLPQDVYSGVAAQV-EIFRRQDAK 970
Query: 765 DPSKHPQALLAKILIDQVDRKLVKQTVMTSVYGVTFVGAREQIKRRLEEKGHITDDRQLF 824
+ + +A++L + RK+VKQTVMT VYGVT G R QI++RL E ++D Q F
Sbjct: 971 EGLQ-----VAQVLEGFISRKVVKQTVMTVVYGVTRYGGRLQIEKRLRE---LSDFPQEF 1022
Query: 825 A--AACYAAKVTLTALGEIFEAARSIMGWLGDCAKVIASENQPVRWTTPLGLPVVQPYCK 882
A+ Y + +L E+F R+I WL + A++I++ V W TPLG+P+VQPY +
Sbjct: 1023 VWEASHYLVRQVFHSLQEMFSGTRAIQHWLTESARLISNAGSAVEWVTPLGIPIVQPYHQ 1082
Query: 883 NERHLIRTSLQVLAL-------QREGNLVKIRKQRTAFPPNFVHSLDGSHMMMTAVACRD 935
+ + ++ +Q + Q+ L KQ+ FPPNF+HSLD SHMM+TA+ C
Sbjct: 1083 DSK--VKGGIQSITCNSGKDSSQKPNTL----KQKNGFPPNFIHSLDSSHMMLTALHCYR 1136
Query: 936 AGLHFAGL 943
GL F +
Sbjct: 1137 KGLTFVSV 1144
>gi|449273005|gb|EMC82634.1| DNA-directed RNA polymerase, mitochondrial, partial [Columba livia]
Length = 1035
Score = 392 bits (1007), Expect = e-106, Method: Compositional matrix adjust.
Identities = 227/604 (37%), Positives = 343/604 (56%), Gaps = 42/604 (6%)
Query: 357 WGRDTQAKLGSRLVELLIETAYV-QHPVNPADYSPPDVRPAFRHRFKTILKHPGQKTTKR 415
W +LG ++ELL+ A V ++ +NP P + P H + +++ +
Sbjct: 374 WPYVLLMRLGMHMLELLVRAAKVPRNILNPR--LEPKLIPVLYHIYSF-------RSSGQ 424
Query: 416 YGVVECDPLVLEGLDRSAKHMLI---PYVPMLVPPKKWKGYNKGGYLFLPSYVMR-THGS 471
G+++ P+ + + +A+ L +PML PP W N G ++ + +MR G+
Sbjct: 425 VGLIKPHPIFSQIMSDAAEATLTFNSSAIPMLCPPVPWTSPNFGAFVLNDTKLMRFVDGA 484
Query: 472 RKQQEALKSVTGNCMKKVFEALDTLGSTKWRVNKQVLSVLESIWVSGGNIAGLVDRNDVL 531
+ Q L+ + V +AL+ LG+ W++N+ VL ++ SI+ GN +R D+
Sbjct: 485 VQHQLLLEQCPPVNLHPVLDALNQLGNCAWKINQPVLDIIISIFNDKGN-----ERLDIP 539
Query: 532 IPEK--------PLSEDMTEVQKWKWSVRKAKKINQERHSQRCDTELKLSVARRMKDEEG 583
P P ++ QK + + K K E HS R D KLS+A ++D+
Sbjct: 540 PPVSEAPRPPTVPGGSAGSKTQKHELLLYKKKV--AEMHSLRMDALYKLSIANYVRDKV- 596
Query: 584 FYYPHNLDFRGRAYPMHPHLNHLSSDVCRGVLEFAEGRPLGKSGLRWLKIHLANLFSGGV 643
F++PHN+DFRGR YP P+ NHL +DV R +L FAEGRPLG GL WLKIHL NL +G
Sbjct: 597 FWFPHNMDFRGRTYPCPPYFNHLGNDVTRAILLFAEGRPLGPKGLDWLKIHLVNL-TGLK 655
Query: 644 EKLSHDGRLAFVENHLYEIFDSAENPINGSRWWLTAEDPFQCLAACINLSEALKSSSPHS 703
+K + RL + + EI DSA+ P+ G RWW+ ++P+Q LA C+ +++A + P +
Sbjct: 656 KKNALQERLEYANEIMEEILDSADRPLTGRRWWMDTDEPWQALACCMEIAKASRCPDPAA 715
Query: 704 VISHLPIHQDGSCNGLQHYAALGRNTLEAAAVNLVAGEKPADVYSEIAVRVHEIMKRDSN 763
+SH PIHQDGSCNGLQHYAALGR+ + A +VNL+ P DVYS +A +V E K+D+
Sbjct: 716 YVSHFPIHQDGSCNGLQHYAALGRDLIGAISVNLMPCSVPQDVYSVVAQQVEEFRKKDAE 775
Query: 764 KDPSKHPQALLAKILIDQVDRKLVKQTVMTSVYGVTFVGAREQIKRRLEEKGHITDDRQL 823
+ +A++L + RK+VKQTVMT VYGVT G R Q+++RL+E ++ L
Sbjct: 776 QG------VRIAQVLQGFISRKVVKQTVMTVVYGVTRYGGRLQMEKRLKEIDGFPEEY-L 828
Query: 824 FAAACYAAKVTLTALGEIFEAARSIMGWLGDCAKVIASENQPVRWTTPLGLPVVQPYCKN 883
+ A+ Y K ++ E+F A R I WL + AK+IA + V W TPLGLP+VQPY ++
Sbjct: 829 WEASQYLVKQVFNSIKEMFSATRDIQNWLTESAKLIAQSGRTVEWVTPLGLPIVQPYYRS 888
Query: 884 ERHLIRTSLQVLALQREGNLVKIR----KQRTAFPPNFVHSLDGSHMMMTAVACRDAGLH 939
+ ++ T + L + L + KQ+ AFPPNF+HSLD +HMM+TA+ C GL
Sbjct: 889 KPTVVSTWCEHLLRRELRGLRAWKPDTVKQKNAFPPNFIHSLDSTHMMLTALHCLRQGLT 948
Query: 940 FAGL 943
F +
Sbjct: 949 FVSV 952
>gi|332026140|gb|EGI66288.1| DNA-directed RNA polymerase, mitochondrial [Acromyrmex echinatior]
Length = 1257
Score = 392 bits (1006), Expect = e-106, Method: Compositional matrix adjust.
Identities = 261/750 (34%), Positives = 392/750 (52%), Gaps = 70/750 (9%)
Query: 223 WFGPLSEAIER-----EQKMQRTKKQKAAYAPHIELLPADKVAVIVMHKMMGLVMAGHED 277
W ++EA ER +QK + K P +++L ++ +M+++ L E
Sbjct: 462 WKSTVTEAFERNLTYLKQKETKMKSDLKILYPFLQVLSKEEYIKAIMNEINQLTKFS-EG 520
Query: 278 RCVQVVQAAVHIGMAIEQEIRIHSFLEKTKNYKRKKIIADTEEVLSKEKELLRKRV---- 333
+ + +G I + + F K K+ +I ++ ++ K E K+
Sbjct: 521 FSHNMTYLYLTMGQYIYKR---YEFQRKMKD----GVIDNSIQIYKKYLEWYTKKNPADR 573
Query: 334 --NSLIKSKRVM-EAQKL-LKNEETKP-WGRDTQAKLGSRLVELLIETAYVQHPVNPADY 388
N IK ++++ EAQK + E + P W R+T +G L +++ + H P
Sbjct: 574 INNGRIKWQQLVDEAQKSGMCCELSVPEWSRNTMINVGKFLYNIIVNDVKIPHVPKPG-- 631
Query: 389 SPPDVRPAF--------RHRFKTILKHPGQKTTKRYGVVECDPLVLEGLDRSAKHMLIPY 440
+P PAF + FK +K P + + Y + L E +
Sbjct: 632 APERQIPAFYLLFRLHSNNFFKEEIK-PHPQLYRFYKDAHSETLSFETI----------L 680
Query: 441 VPMLVPPKKWKGYNKGGYLFLPSYVMRTHGSRKQQEALKSVTGNCMKKVFEALDTLGSTK 500
+P+ PP+ W N GGYL + +R K L++ + VF+ L+ LGS
Sbjct: 681 LPIFSPPRPWVNVNTGGYLLSKAAFVR-DPYMKPSHLLRNTPTKQLYPVFDCLNQLGSIP 739
Query: 501 WRVNKQVLSVLESIWVSGGNIAGLVDRNDVLIPEKPLSEDM--TEVQKWKWSVRKA---- 554
W++N +L +L I+ GG+ V + +IP S D+ +E K + K
Sbjct: 740 WKINIPMLDILIQIFRDGGSKELNVPQPSTVIPS---STDIIASETNKSPKEISKLLLQF 796
Query: 555 KKINQERHSQRCDTELKLSVARRMKDEEGFYYPHNLDFRGRAYPMHPHLNHLSSDVCRGV 614
K++ E HS CD KLS+A +D+ F+ PHNLDFRGRAYP+ PHL HLSSD+ R +
Sbjct: 797 KRMKNEMHSLWCDCLYKLSLANHFRDK-VFWMPHNLDFRGRAYPVPPHLTHLSSDLGRSI 855
Query: 615 LEFAEGRPLGKSGLRWLKIHLANLFSGGVEKLSHDGRLAFVENHLYEIFDSAENPINGSR 674
L FA+G+PLG GL WLKIH N+ SG ++ RL F L I DSA NP+ G
Sbjct: 856 LMFAQGKPLGSDGLDWLKIHAINM-SGLKKREPMYKRLEFANEILDLIVDSARNPLTGKM 914
Query: 675 WWLTAEDPFQCLAACINLSEALKSSSPHSVISHLPIHQDGSCNGLQHYAALGRNTLEAAA 734
WW A++P+Q LA C + AL+S + I LPIHQDGSCNGLQHYAALGR+ + A +
Sbjct: 915 WWTKADEPWQTLATCKEIDNALQSPNVEKYICRLPIHQDGSCNGLQHYAALGRDLIGAKS 974
Query: 735 VNLVAGEKPADVYSEIAVRVHEIMKRDSNKDPSKHPQALLAKILIDQVDRKLVKQTVMTS 794
VNL ++P DVYS +A V + K D++ +A++L + RK++KQTVMT+
Sbjct: 975 VNLYPSDRPQDVYSVVAKMVDDYRKSDADAGDK------IAQVLEGHISRKVMKQTVMTT 1028
Query: 795 VYGVTFVGAREQIKRRLEEKGHITDDRQLFAAACYAAKVTLTALGEIFEAARSIMGWLGD 854
VYGVT GAR QI R+L + D +++ + Y + T +L +FE+A+ I W D
Sbjct: 1029 VYGVTKFGARLQIARQLSDLKDF-DQTYIWSGSMYLVEKTFMSLQSMFESAKEIQNWFTD 1087
Query: 855 CAKVIASE-NQPVRWTTPLGLPVVQPYCKNERHLIRTSLQVLALQREGNLVKIRKQRTAF 913
CA+ I NQ V+W TPLGLPV+QPY K++ +++ L + R+ + V KQ+ AF
Sbjct: 1088 CARTITIRCNQYVQWVTPLGLPVIQPYSKHK----KSNNSKLKIFRKLDTV---KQKNAF 1140
Query: 914 PPNFVHSLDGSHMMMTAVACRDAGLHFAGL 943
PNF+HSLD SHMM+T++ C AG+ F +
Sbjct: 1141 APNFIHSLDSSHMMLTSLYCEQAGITFMSV 1170
>gi|344243361|gb|EGV99464.1| DNA-directed RNA polymerase, mitochondrial [Cricetulus griseus]
Length = 1232
Score = 390 bits (1001), Expect = e-105, Method: Compositional matrix adjust.
Identities = 232/637 (36%), Positives = 354/637 (55%), Gaps = 59/637 (9%)
Query: 349 LKNEETKPWGRDTQAKLGSRLVELLIETAYVQHPVNPADYSPPDVRPAFRHRFKTILKHP 408
L+ +PW LG +L E+L++ VQ P N S P A RH +
Sbjct: 527 LETPMQQPWSLTVLLHLGKQLAEMLVQA--VQMPRN---LSTPQ---ASRHLIPVLYHVY 578
Query: 409 GQKTTKRYGVVECDPLVLEGLDRSAKHMLI---PYVPMLVPPKKWKGYNKGGYLFLPSYV 465
++ ++ G+++ P + L+ +A+ LI VPML PP W + G YL + +
Sbjct: 579 SFRSYRQIGILKPHPAFSKLLETAAEPTLILETTEVPMLCPPLPWTTPHTGAYLLSSTKL 638
Query: 466 MR-THGSRKQQEALKSVTGNCMKKVFEALDTLGSTKWRVNKQVLSVLESIWVSGG--NIA 522
MR T G+ + Q L+ + +AL LG+ WRVN ++L ++ I+ G +
Sbjct: 639 MRATEGTTQHQHLLERCAPAQLHGALDALTQLGNCAWRVNGRLLDLVLQIFRDKGCTRLG 698
Query: 523 GLVDRNDVLIPEK-PLSEDMTEVQK--WKWSVRKAKKINQERHSQRCDTELKLSVARRMK 579
R++ P + L T + K + + + KI +E HS R + +LS+A+ ++
Sbjct: 699 VPPPRSEAPQPAQLRLPPGATPLHKAELRKELSRCLKIAREMHSLRIEALYRLSLAQHLR 758
Query: 580 DEEGFYYPHNLDFRGRAYPMHPHLNHLSSDVCRGVLEFAEGRPLGKSGLRWLKIHLANLF 639
+ F+ PHN+DFRGR YP P+ NHL SD+ R +LEFAEGRPLG GL W+KIHL NL
Sbjct: 759 NRV-FWLPHNMDFRGRTYPCPPYFNHLGSDLARALLEFAEGRPLGPRGLDWIKIHLVNL- 816
Query: 640 SGGVEKLSHDGRLAFVENHLYEIFDSAENPINGSRWWLTAEDPFQCLAACINLSEALKSS 699
+G ++ S RL F + + EI DSA+NP+ G +WW+ A++P+Q LA CI ++ A++S
Sbjct: 817 TGLRKRDSLRMRLRFADEVMEEILDSADNPMTGRKWWMEADEPWQTLACCIEVARAVRSP 876
Query: 700 SPHSVISHLPIHQDGSCNGLQHYAALGRNTLEAAAVNLVAGEKPADVYSEIAVRVHEIMK 759
+ +SHLP+HQDGSCNGLQHYAALGR++ AA+VNL+ + P DVY E+A +V E+ +
Sbjct: 877 DAAAYVSHLPVHQDGSCNGLQHYAALGRDSAGAASVNLMPSDLPQDVYREVAAQVEELRQ 936
Query: 760 RDSNKDPSKHPQALLAKILIDQVDRKLVKQTVMTSVYGVTFVGAREQIKRRLEEKGHITD 819
RD+ KD + +A +L + RK+VKQTVMT VYGVT G R QI++RL E +
Sbjct: 937 RDA-KDGLQ-----VAHVLKGFITRKVVKQTVMTVVYGVTRYGGRLQIEKRLRELSNFPQ 990
Query: 820 DRQLFAAACYAAKVTLTALGEIFEAARSI---------MG-------------------- 850
+ ++ A+ Y ++ +L E+F + R+I MG
Sbjct: 991 EF-VWEASHYLVRLVFKSLQEMFSSTRAIQVRPCPPSPMGGNYPPPRGLLIQPGVLSHPQ 1049
Query: 851 -WLGDCAKVIASENQPVRWTTPLGLPVVQPYCKNERHLIRTSLQVLALQREGNLVK---I 906
WL + A +I+ PV W TPLG+PV+QPY + + ++ +Q + + ++ +
Sbjct: 1050 HWLTESANLISHSGWPVEWVTPLGIPVIQPYHREAKVQVKGGIQSITMTSSMDITQKPNT 1109
Query: 907 RKQRTAFPPNFVHSLDGSHMMMTAVACRDAGLHFAGL 943
KQ+ FPPNF+HSLD +HMM+TA+ C GL F +
Sbjct: 1110 LKQKNGFPPNFIHSLDSAHMMLTALHCYRKGLTFVSV 1146
>gi|121483706|gb|ABM54185.1| mitochondrial RNA polymerase [Paracentrotus lividus]
Length = 1421
Score = 389 bits (999), Expect = e-105, Method: Compositional matrix adjust.
Identities = 216/560 (38%), Positives = 326/560 (58%), Gaps = 28/560 (5%)
Query: 395 PAFRHRFKTILKHPGQKTTKRYGVVECDPLVLEGLDRSAKHMLIPY----VPMLVPPKKW 450
PA H + ++ K G ++ P +++ L ++AK + + +PM+ PP W
Sbjct: 790 PALYHMYTY-------RSFKHVGFIKPHPTLVD-LFQTAKDPNLEFDTNMLPMMTPPIPW 841
Query: 451 KGYNKGGYLFLPSYVMRT-HGSRKQQEALKSVTGNCMKKVFEALDTLGSTKWRVNKQVLS 509
G Y + +MR+ G+ + QE L+ + + +AL+ L S W +N +L
Sbjct: 842 TSVKFGAYPLSSTKIMRSKDGANQHQEVLEKTPSQELYPILDALNQLSSVPWIINNPILD 901
Query: 510 VLESIWVSGGNIAGLVDRNDVLIPEKP-LSEDMT--EVQKWKWSVRKAKKINQERHSQRC 566
+ S++ + G+ V + P P ++ D++ E+ + A+K+ E HS R
Sbjct: 902 TVISVFRNNGSKELDVAQPASACPYPPRITSDVSREELAQIHRERAAARKMQAEMHSLRM 961
Query: 567 DTELKLSVARRMKDEEGFYYPHNLDFRGRAYPMHPHLNHLSSDVCRGVLEFAEGRPLGKS 626
D KLS+A +++++ F++PHN+DFRGR YP PH NH +DV R +L FA GRPLG+
Sbjct: 962 DMLYKLSIADKVRND-VFWFPHNMDFRGRVYPCPPHFNHFGNDVTRSLLLFARGRPLGEE 1020
Query: 627 GLRWLKIHLANLFSGGVEKLSHDGRLAFVENHLYEIFDSAENPINGSRWWLTAEDPFQCL 686
G RWLKIHL NL +G ++ S RL + + + EI DSA+NP++G++WW A++ +Q L
Sbjct: 1021 GFRWLKIHLVNL-TGHKKRCSVAERLQYAHDMMPEIMDSADNPLDGNKWWQGADEQWQTL 1079
Query: 687 AACINLSEALKSSSPHSVISHLPIHQDGSCNGLQHYAALGRNTLEAAAVNLVAGEKPADV 746
AACI +++A++S P + ISHLPIHQDGSCNGLQHYAALGR+ + A VNL + P DV
Sbjct: 1080 AACIEVTKAIRSGDPTTYISHLPIHQDGSCNGLQHYAALGRDLIGAEQVNLHPFDVPQDV 1139
Query: 747 YSEIAVRVHEIMKRDSNKDPSKHPQALLAKILIDQVDRKLVKQTVMTSVYGVTFVGAREQ 806
YS +A V ++ K+D+ K +A L + R +VKQTVMT VYGVT G R Q
Sbjct: 1140 YSGVAQMVEDLRKQDAEKGNK------IAIALDGLIKRNVVKQTVMTVVYGVTSYGGRRQ 1193
Query: 807 IKRRLEEKGHITDDRQLFAAACYAAKVTLTALGEIFEAARSIMGWLGDCAKVIASENQPV 866
I ++L E+ ++ D++ FAA KV +L ++F R I WL +CA +I+ + V
Sbjct: 1194 ILKQLREEDDLSMDQKWFAAGYITLKV-FQSLRKMFTKTREIQDWLTECAWLISKAGETV 1252
Query: 867 RWTTPLGLPVVQPYCKNERHLI-RTSLQVLALQREGNLVK--IRKQRTAFPPNFVHSLDG 923
W TPLGLP++QPY K LI V +R + KQ+ AFPPNF+HSLD
Sbjct: 1253 EWVTPLGLPIIQPYHKKSLKLITHGGRNVYHEERHCQTERPDTLKQKNAFPPNFIHSLDS 1312
Query: 924 SHMMMTAVACRDAGLHFAGL 943
+HMM+T++ + AG+ FA +
Sbjct: 1313 THMMLTSLYSQRAGITFASV 1332
>gi|449491870|ref|XP_002193465.2| PREDICTED: DNA-directed RNA polymerase, mitochondrial [Taeniopygia
guttata]
Length = 1263
Score = 389 bits (998), Expect = e-105, Method: Compositional matrix adjust.
Identities = 250/745 (33%), Positives = 391/745 (52%), Gaps = 59/745 (7%)
Query: 223 WFGPLSEAIEREQKMQRTKKQKAAY---APHIELLPADKVAVIVMHKMMGLVMAGHEDRC 279
W + +A++ ++ K+ + Y P++ LLP ++ I+M + L G
Sbjct: 468 WHDAILQALQNSKRSMARPKRLSKYNILYPYLCLLPDEEYVDIMMQVLNDLSPQGES--- 524
Query: 280 VQVVQAAVHIGMAIEQEIRIHSFLEKTKNYKRKKIIADTEEVLSKEKE----LLRKRVNS 335
+ A +G + I L + K ++I + ++L+K+ + + R+
Sbjct: 525 --LAVLARELGSKVYDRYIIQRKLRSGQLEKVQEIYENYIQLLAKDSQPKQYMPREYWEK 582
Query: 336 LIKSKRVMEAQKLLKNEETKPWGRDTQAKLGSRLVELLIETAYV-QHPVNPADYSPPDVR 394
L+ + L +T W +LG ++ELL++ V ++ +N S P
Sbjct: 583 LVAEAGFGPSLNL----KTCSWPCVLLMRLGMHMLELLVKAVKVPRNILNRRLESKP--V 636
Query: 395 PAFRHRFKTILKHPGQKTTKRYGVVECDPLVLEGLDRSAKHMLI---PYVPMLVPPKKWK 451
P H + + + G++ P+ + + +A+ L +PML PP W
Sbjct: 637 PVLYHVYSFY-------SNWQVGLIRPHPVFSQLVSNAAETTLTFNSSAMPMLCPPVPWT 689
Query: 452 GYNKGGYLFLPSYVMR-THGSRKQQEALKSVTGNCMKKVFEALDTLGSTKWRVNKQVLSV 510
G ++ + +MR + Q+ L+ + V +AL+ LG+ W++N+ VL +
Sbjct: 690 SPTFGAFVLNDTKLMRFMDETTYHQQLLEQCPLVNLHAVLDALNQLGNCAWKINQPVLDI 749
Query: 511 LESIWVSGGNIAGLVDRNDVLIPEKPLSEDMTEVQKWKW----------SVRKAKKINQE 560
+ SI+ GN ++ D+ PLSE V KK E
Sbjct: 750 IISIFNDKGN-----EKLDI---PPPLSEAPKPPTPPSNSSSWSKSFKHEVFLCKKKAAE 801
Query: 561 RHSQRCDTELKLSVARRMKDEEGFYYPHNLDFRGRAYPMHPHLNHLSSDVCRGVLEFAEG 620
HS R D KLS+A ++D+ F++PHN+DFRGR YP P+ NHL +DV R +L FAEG
Sbjct: 802 MHSLRMDALYKLSIANYVRDKV-FWFPHNMDFRGRTYPCPPYFNHLGNDVTRAILLFAEG 860
Query: 621 RPLGKSGLRWLKIHLANLFSGGVEKLSHDGRLAFVENHLYEIFDSAENPINGSRWWLTAE 680
RPLG GL WLKIHL NL +G +K + RL + + +I DSA+ P+ G +WW+ +
Sbjct: 861 RPLGPRGLDWLKIHLINL-TGLKKKNALQERLEYANEIMEDILDSADRPLTGRKWWMDTD 919
Query: 681 DPFQCLAACINLSEALKSSSPHSVISHLPIHQDGSCNGLQHYAALGRNTLEAAAVNLVAG 740
+P+Q LA C+ +++A +S P + ISH P+HQDGSCNGLQHYAALGR+ AA+VNLV
Sbjct: 920 EPWQALACCMEIAKASRSPDPAAYISHFPVHQDGSCNGLQHYAALGRDLSGAASVNLVPC 979
Query: 741 EKPADVYSEIAVRVHEIMKRDSNKDPSKHPQALLAKILIDQVDRKLVKQTVMTSVYGVTF 800
P DVYS +A +V E K+D+ + +A++L + RK+VKQTVMT VYGVT
Sbjct: 980 GLPQDVYSAVAQQVEEFRKKDAERGLK------VAQVLQGFISRKVVKQTVMTVVYGVTR 1033
Query: 801 VGAREQIKRRLEEKGHITDDRQLFAAACYAAKVTLTALGEIFEAARSIMGWLGDCAKVIA 860
G R QI++RL+E ++ L+ A+ Y K ++ E+F A R I WL + AK+IA
Sbjct: 1034 YGGRLQIEKRLKEIDEFPEE-YLWEASHYLVKQVFNSIKEMFSATRDIQNWLTESAKLIA 1092
Query: 861 SENQPVRWTTPLGLPVVQPYCKNERHLIRTSLQVLALQREGNLVK--IRKQRTAFPPNFV 918
+ V W TPLGLP+VQPY ++ ++ +Q L+++ + K KQ+ AFPPNF+
Sbjct: 1093 QSGRTVEWVTPLGLPIVQPYYRSRSTVLNCGMQRLSVKTSNSSQKPDTVKQKNAFPPNFI 1152
Query: 919 HSLDGSHMMMTAVACRDAGLHFAGL 943
HSLD +HMM+TA+ C GL F +
Sbjct: 1153 HSLDSTHMMLTALHCLRKGLTFVSV 1177
>gi|329663210|ref|NP_001192480.1| DNA-directed RNA polymerase, mitochondrial [Bos taurus]
Length = 1224
Score = 386 bits (991), Expect = e-104, Method: Compositional matrix adjust.
Identities = 235/667 (35%), Positives = 360/667 (53%), Gaps = 57/667 (8%)
Query: 310 KRKKIIADTEEVLSKEKELLR-----KRVNSLIKSKRVMEAQKLLKNEETKPWGRDTQAK 364
KRK++ EE+ + E L +V ++ EA + + +PW +
Sbjct: 499 KRKRLRNQVEELEQRYFEYLHLLASDTQVAEPCLPRQRWEALGVPEAPPEQPWPVSVLVQ 558
Query: 365 LGSRLVELLIETAYVQHPVN-PADYSPPDVRPAFRHRFKTILKHPGQKTTKRYGVVECDP 423
LG +L E+L+ VQ P + A P + P H + ++ ++ G+++ P
Sbjct: 559 LGKQLAEVLVRA--VQMPSSLAAPRGPSTLIPVLYHVYSF-------RSFRQIGILKPHP 609
Query: 424 LVLEGLDRSAKHMLI---PYVPMLVPPKKWKGYNKGGYLFLPSYVMRT-HGSRKQQEALK 479
+ + +A+ LI VPML PP W + G +L P+ +MR+ G+++ Q L+
Sbjct: 610 AFTQLQETAAERTLIFESTEVPMLCPPLPWTSPHSGAFLLSPTKMMRSLEGTQQHQLLLE 669
Query: 480 SVTGNCMKKVFEALDTLGSTKWRVNKQVLSVLESIWVSGG---------------NIAGL 524
+ +AL LG+ WRVN +VL ++ ++ G G
Sbjct: 670 RCPPAELHGALDALTQLGNCAWRVNGRVLDLVLDLFRDKGCPRLGVPAPPTEAPRPPEGR 729
Query: 525 VDRNDVLIPEKPLSEDMTEVQKWKWSVRKAKKINQERHSQRCDTELKLSVARRMKDEEGF 584
L+PE D E+++ + + K+ +E S R D +LS+A+ +++ F
Sbjct: 730 QTPKGCLLPEAS-PADKAEMRR---ELARRLKVAREMQSLRADALYRLSLAQHLRNHV-F 784
Query: 585 YYPHNLDFRGRAYPMHPHLNHLSSDVCRGVLEFAEGRPLGKSGLRWLKIHLANLFSGGVE 644
+ PHN+DFRGR YP PH NHL SD+ R +LEFA+GRPLG GL WLKIHL NL +G +
Sbjct: 785 WLPHNMDFRGRTYPCSPHFNHLGSDLARALLEFAQGRPLGPHGLDWLKIHLINL-TGLKK 843
Query: 645 KLSHDGRLAFVENHLYEIFDSAENPINGSRWWLTAEDPFQCLAACINLSEALKSSSPHSV 704
+ S R + + + +I DSAE P+ G +WW+ A++P+Q LA C+ +++ + S P +
Sbjct: 844 RESLQTRRDYADAVMEDILDSAERPMTGRKWWMEADEPWQTLACCMEIAQVVHSPDPTTY 903
Query: 705 ISHLPIHQDGSCNGLQHYAALGRNTLEAAAVNLVAGEKPADVYSEIAVRVHEIMKRDSNK 764
ISH P+HQDGSCNGLQHYAALGR++ A +VNL + P DVYSE+A +V E+ +R K
Sbjct: 904 ISHFPVHQDGSCNGLQHYAALGRDSTGATSVNLSPSDLPQDVYSEVAAQV-EVFRRQDAK 962
Query: 765 DPSKHPQALLAKILIDQVDRKLVKQTVMTSVYGVTFVGAREQIKRRLEEKGHITDDRQLF 824
+ +A++L + RK+VKQTVMT VYGVT G R QI++RL E + D Q F
Sbjct: 963 QGVR-----VAQVLEGFISRKVVKQTVMTVVYGVTRYGGRLQIEKRLRE---LEDFPQEF 1014
Query: 825 A--AACYAAKVTLTALGEIFEAARSIMGWLGDCAKVIASENQPVRWTTPLGLPVVQPYCK 882
A+ Y + +L E+F RSI WL + A++I+ V W TPLG+P++QPY +
Sbjct: 1015 VWEASHYLVRQVFNSLQEMFSGTRSIQRWLTESARLISLTGSAVEWITPLGVPIIQPYHR 1074
Query: 883 NERHLIRT---SLQVLALQREGNLVK---IRKQRTAFPPNFVHSLDGSHMMMTAVACRDA 936
+ + ++R LQ L + + KQ+ FPPNF+HSLD +HMM+TA+ C
Sbjct: 1075 DSKVMVRAIKGGLQSLTFSSSVDTNQKPNTLKQKNGFPPNFIHSLDSTHMMLTALYCYRK 1134
Query: 937 GLHFAGL 943
GL F +
Sbjct: 1135 GLTFVSV 1141
>gi|296485392|tpg|DAA27507.1| TPA: CG4644-like [Bos taurus]
Length = 1224
Score = 386 bits (991), Expect = e-104, Method: Compositional matrix adjust.
Identities = 235/667 (35%), Positives = 360/667 (53%), Gaps = 57/667 (8%)
Query: 310 KRKKIIADTEEVLSKEKELLR-----KRVNSLIKSKRVMEAQKLLKNEETKPWGRDTQAK 364
KRK++ EE+ + E L +V ++ EA + + +PW +
Sbjct: 499 KRKRLRNQVEELEQRYFEYLHLLASDTQVAEPCLPRQHWEALGVPEAPPEQPWPVSVLVQ 558
Query: 365 LGSRLVELLIETAYVQHPVN-PADYSPPDVRPAFRHRFKTILKHPGQKTTKRYGVVECDP 423
LG +L E+L+ VQ P + A P + P H + ++ ++ G+++ P
Sbjct: 559 LGKQLAEVLVRA--VQMPSSLAAPRGPSTLIPVLYHVYSF-------RSFRQIGILKPHP 609
Query: 424 LVLEGLDRSAKHMLI---PYVPMLVPPKKWKGYNKGGYLFLPSYVMRT-HGSRKQQEALK 479
+ + +A+ LI VPML PP W + G +L P+ +MR+ G+++ Q L+
Sbjct: 610 AFTQLQETAAERTLIFESTEVPMLCPPLPWTSPHSGAFLLSPTKMMRSLEGTQQHQLLLE 669
Query: 480 SVTGNCMKKVFEALDTLGSTKWRVNKQVLSVLESIWVSGG---------------NIAGL 524
+ +AL LG+ WRVN +VL ++ ++ G G
Sbjct: 670 RCPPAELHGALDALTQLGNCAWRVNGRVLDLVLDLFRDKGCPRLGVPAPPTEAPRPPEGR 729
Query: 525 VDRNDVLIPEKPLSEDMTEVQKWKWSVRKAKKINQERHSQRCDTELKLSVARRMKDEEGF 584
L+PE D E+++ + + K+ +E S R D +LS+A+ +++ F
Sbjct: 730 QTPKGCLLPEAS-PADKAEMRR---ELARRLKVAREMQSLRADALYRLSLAQHLRNHV-F 784
Query: 585 YYPHNLDFRGRAYPMHPHLNHLSSDVCRGVLEFAEGRPLGKSGLRWLKIHLANLFSGGVE 644
+ PHN+DFRGR YP PH NHL SD+ R +LEFA+GRPLG GL WLKIHL NL +G +
Sbjct: 785 WLPHNMDFRGRTYPCSPHFNHLGSDLARALLEFAQGRPLGPHGLDWLKIHLINL-TGLKK 843
Query: 645 KLSHDGRLAFVENHLYEIFDSAENPINGSRWWLTAEDPFQCLAACINLSEALKSSSPHSV 704
+ S R + + + +I DSAE P+ G +WW+ A++P+Q LA C+ +++ + S P +
Sbjct: 844 RESLQTRRDYADAVMEDILDSAERPMTGRKWWMEADEPWQTLACCMEIAQVVHSPDPTTY 903
Query: 705 ISHLPIHQDGSCNGLQHYAALGRNTLEAAAVNLVAGEKPADVYSEIAVRVHEIMKRDSNK 764
ISH P+HQDGSCNGLQHYAALGR++ A +VNL + P DVYSE+A +V E+ +R K
Sbjct: 904 ISHFPVHQDGSCNGLQHYAALGRDSTGATSVNLSPSDLPQDVYSEVAAQV-EVFRRQDAK 962
Query: 765 DPSKHPQALLAKILIDQVDRKLVKQTVMTSVYGVTFVGAREQIKRRLEEKGHITDDRQLF 824
+ +A++L + RK+VKQTVMT VYGVT G R QI++RL E + D Q F
Sbjct: 963 QGVR-----VAQVLEGFISRKVVKQTVMTVVYGVTRYGGRLQIEKRLRE---LEDFPQEF 1014
Query: 825 A--AACYAAKVTLTALGEIFEAARSIMGWLGDCAKVIASENQPVRWTTPLGLPVVQPYCK 882
A+ Y + +L E+F RSI WL + A++I+ V W TPLG+P++QPY +
Sbjct: 1015 VWEASHYLVRQVFNSLQEMFSGTRSIQRWLTESARLISLTGSAVEWITPLGVPIIQPYHR 1074
Query: 883 NERHLIRT---SLQVLALQREGNLVK---IRKQRTAFPPNFVHSLDGSHMMMTAVACRDA 936
+ + ++R LQ L + + KQ+ FPPNF+HSLD +HMM+TA+ C
Sbjct: 1075 DSKVMVRAIKGGLQSLTFSSSVDTNQKPNTLKQKNGFPPNFIHSLDSTHMMLTALYCYRK 1134
Query: 937 GLHFAGL 943
GL F +
Sbjct: 1135 GLTFVSV 1141
>gi|449295533|gb|EMC91554.1| hypothetical protein BAUCODRAFT_38669 [Baudoinia compniacensis UAMH
10762]
Length = 1478
Score = 385 bits (988), Expect = e-104, Method: Compositional matrix adjust.
Identities = 252/742 (33%), Positives = 380/742 (51%), Gaps = 70/742 (9%)
Query: 151 SSIFLKGLYKRIKLQEYREMKKRKFNLLRRRQVKQETEAWERMVDEYKELE-AKMIEKRL 209
S I L L L+ RE + L+ V + W DE +++ + ++ R
Sbjct: 362 SFISLPPLPADAPLEAQRERAYERQRLMEETSVDIAIQRWREADDELRKIGISTQLQSR- 420
Query: 210 APNLPHIKGLFLGWFGPLSEAIERE---------QKMQRTKKQKAAYAPHIELLPADKVA 260
+ L W+ L A++ E Q ++ ++ YAP++ELLP DKVA
Sbjct: 421 -----PLGALMWQWYQALLPALKEELAECRKVMAQPDGAKEEDRSFYAPYLELLPMDKVA 475
Query: 261 VIVMHKMMGLVMAGHEDRC-------VQVVQAAVHIGMAIEQEIRIHSFLEKTKNYKRKK 313
+ ++ AG +DR +++ +G +E E +E+ K ++
Sbjct: 476 ANTILFVVSR-FAGGKDRHTKKYEVEMKLSHLTTSLGKQLEAEADASRSVEQMKERRQGG 534
Query: 314 IIADTEEVLSKEKELLRKRVNSLIKSKRVMEAQKLLKNEETKPWGRDTQAKLGSRLVELL 373
I + ++R K + + E W D + KL + L++ L
Sbjct: 535 KIKAS-----------KRRQGMFAKGLKHKKGANSTLVESDDKWPLDAKVKLCAMLIQKL 583
Query: 374 IETAYV----QHPVNPADYSPPDVRPAFRHRFKTILKHPGQKTTKRYGVVECDPLVLEGL 429
E+A + +HP + ++PAF HR K +L K+ G+V +P +++ L
Sbjct: 584 KESAQLPVTREHPRTKQKIT--QLQPAFLHRIKYVL-------GKKVGIVAPNPALIDKL 634
Query: 430 DRSAKHMLIP-YVPMLVPPKKWKGYNKGGYLFLPSYVMRTH-GSRKQQEALKSV-TGNCM 486
+ +I +PM+V PK W G++ GGY+ + V+R G + ++ + M
Sbjct: 635 ESEPMGSVIAKRMPMIVEPKPWTGWSVGGYIHYANDVLRLGPGDKSGRDYFHAAHNKGDM 694
Query: 487 KKVFEALDTLGSTKWRVNKQVLSVLESIWVSGGNIAGLVDRN-DVLIPEKPLSEDMTEVQ 545
+++ L LG W+V+ V V W SG IA + + +P +P + DM E +
Sbjct: 695 TQLYAGLTALGKVPWKVHPDVFRVQIEAWNSGEEIANFAPLHPQIDVPPEPPAGDMAERR 754
Query: 546 KWKWSVRKAKKINQERHSQRCDTELKLSVARRMKDEEGFYYPHNLDFRGRAYPMHPHLNH 605
W +V + HS+RC ++ VAR M +E Y+PHN+DFRGRAYP+ P+LNH
Sbjct: 755 NWLKAVDDVENKRSGAHSKRCFQNFQMEVARAMLNET-IYFPHNMDFRGRAYPIPPYLNH 813
Query: 606 LSSDVCRGVLEFAEGRPLGKSGLRWLKIHLANLFSGGVEKLSHDGRLAFVENHLYEIFDS 665
+ +D RGVL FAEG+PLG GLRWLKIHLA + G +K S RL + E+HL +I+DS
Sbjct: 814 MGADNVRGVLVFAEGKPLGDKGLRWLKIHLATV--AGYDKASMSERLQYTEDHLDDIYDS 871
Query: 666 AENPINGSRWWLTAEDPFQCLAACINLSEALKSSSPHSVISHLPIHQDGSCNGLQHYAAL 725
NP+NG RWWL AED +Q LAAC L++AL S P +S LPI QDG+CNGLQHYAAL
Sbjct: 872 VRNPLNGRRWWLKAEDSWQTLAACFELTKALDSPDPTKFLSTLPIQQDGTCNGLQHYAAL 931
Query: 726 GRNTLEAAAVNLVAGEKPADVYSEIAVRVHEIMKRDS---NKDPSKHPQALLAKILIDQV 782
G + + A VNL G++PADVY+ +A V + + RD+ NK +A+ L ++
Sbjct: 932 GGDEIGARQVNLEPGDRPADVYTAVAEEVKKAVARDAAAGNK---------IAQKLDGRL 982
Query: 783 DRKLVKQTVMTSVYGVTFVGAREQIKRRLE---EKGHITDDRQLFAAACYAAKVTLTALG 839
RK VKQ VMT+VYGVTF GA+ Q++R+LE + DD L + Y A ALG
Sbjct: 983 TRKCVKQPVMTNVYGVTFYGAKAQVQRQLEVLFPEVSRFDDISLQKMSLYVATEIFKALG 1042
Query: 840 EIFEAARSIMGWLGDCAKVIAS 861
+F A++I WLG CA IA+
Sbjct: 1043 SMFTGAQAIQNWLGQCADRIAT 1064
Score = 80.1 bits (196), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 38/80 (47%), Positives = 52/80 (65%), Gaps = 2/80 (2%)
Query: 866 VRWTTPLGLPVVQPYCKNERHLIRTSLQVLALQREG--NLVKIRKQRTAFPPNFVHSLDG 923
V WTTPL LPVVQPY + + T++Q L L + V RKQ AFPPNF+HSLD
Sbjct: 1154 VVWTTPLRLPVVQPYRTSASKGVGTAMQTLYLTNPHVWDPVSKRKQLQAFPPNFIHSLDA 1213
Query: 924 SHMMMTAVACRDAGLHFAGL 943
+HM+++A+ C + G+ FA +
Sbjct: 1214 THMLLSALKCTEMGMTFASI 1233
>gi|328769272|gb|EGF79316.1| hypothetical protein BATDEDRAFT_35464 [Batrachochytrium dendrobatidis
JAM81]
Length = 1404
Score = 384 bits (985), Expect = e-103, Method: Compositional matrix adjust.
Identities = 209/519 (40%), Positives = 308/519 (59%), Gaps = 34/519 (6%)
Query: 357 WGRDTQAKLGSRLVELLIETA----YVQHPVNPADYSPPDVRPAFRHRFKTILKHPGQKT 412
WG + + K+G+ L+ LL++ V P P DV PAF H+ +L G
Sbjct: 598 WGEEAKVKIGTFLLHLLVQAGKIAVQVPDPNKPGHKMSMDV-PAFEHK---VLSSYG--- 650
Query: 413 TKRYGVVECDPLVLEGLDRSAKHMLIPYVPMLVPPKKWKGYNKGGYLFLPSYVMRTHGSR 472
K YG + V+E ++ +L ++PMLV P+ W N+GGYL S ++R +
Sbjct: 651 -KTYGYIIRHAAVMEMMENGCASVLPLHLPMLVQPRPWLSCNRGGYLQHGSQLVRILNNP 709
Query: 473 KQQEALKSVT-GNCMKKVFEALDTLGSTKWRVNKQVLSVLESIWVSGGNIAGLVDRNDVL 531
+ +E LK+ N + V A+D LGST W +N + V + W + + ++
Sbjct: 710 EHREYLKAADEANHLPLVLRAVDKLGSTAWVINPIIYKVASTFWNKKESAPSI--PKPIV 767
Query: 532 IPE--KPLSEDMTEVQKWKWSVRKAKKINQ--ERHSQRCDTELKLSVARRMKDEEGFYYP 587
IPE KP D +WK+ + K++ Q HSQRCD K+ +AR+ E ++P
Sbjct: 768 IPEIPKPSDYDTNPDARWKYIKKNTKRLQQISNNHSQRCDLNYKMEIARKYLGET-IFFP 826
Query: 588 HNLDFRGRAYPMHPHLNHLSSDVCRGVLEFAEGRPLGKSGLRWLKIHLANLFSGGVEKLS 647
HNLDFRGRAYPM P+LNH+ +D+CRG+L+F +PLG++G+RWLKI ++NL G +K S
Sbjct: 827 HNLDFRGRAYPMPPNLNHIGNDLCRGLLKFKVAKPLGENGMRWLKIQVSNL--AGNDKAS 884
Query: 648 HDGRLAFVENHLYEIFDSAENPINGSRWWLTAEDPFQCLAACINLSEALKSSSPHSVISH 707
D R F E+H +I DSAE+P++G RWWL +E+P+Q LA CI L++A K +P +S
Sbjct: 885 LDNRAKFAEDHRKDIIDSAEHPLDGKRWWLKSENPWQLLATCIELNQAWKCDNPLEFMSS 944
Query: 708 LPIHQDGSCNGLQHYAALGRNTLEAAAVNLVAGEKPADVYSEIAVRVHEIMKRDSNKDPS 767
+ IHQDGSCNGLQHYAALG + A VNL E P DVYS ++ +V +++K+ + ++
Sbjct: 945 IHIHQDGSCNGLQHYAALGGDVDGAKVVNLTRSEVPQDVYSSVSNQVMKLVKQQAEQNV- 1003
Query: 768 KHPQALLAKILIDQVDRKLVKQTVMTSVYGVTFVGAREQIKRRL------EEKGHITDDR 821
P+ALL L+++++RKLVKQTVMT+ YG+TF GA +Q++ RL E D
Sbjct: 1004 --PEALL---LLNRINRKLVKQTVMTNTYGITFSGAHDQVRNRLLEARVKESGDKALTDE 1058
Query: 822 QLFAAACYAAKVTLTALGEIFEAARSIMGWLGDCAKVIA 860
QL A A +A ++ ++G IFE AR+I WL + A +IA
Sbjct: 1059 QLHACALFATRLIFQSMGTIFEGARAIQVWLNETANIIA 1097
Score = 90.9 bits (224), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 40/80 (50%), Positives = 54/80 (67%), Gaps = 2/80 (2%)
Query: 866 VRWTTPLGLPVVQPYCKNERHLIRTSLQVLALQREGNL--VKIRKQRTAFPPNFVHSLDG 923
V WTTPLG P+VQPY +E I+T++Q + + V RKQ TAFPPNF+HSLD
Sbjct: 1215 VIWTTPLGFPIVQPYRSHETAEIKTAMQSFTIYNHNDPAPVNARKQSTAFPPNFIHSLDA 1274
Query: 924 SHMMMTAVACRDAGLHFAGL 943
SHMM++A+AC + + FA +
Sbjct: 1275 SHMMLSAIACDASNIEFAAV 1294
>gi|390478301|ref|XP_003735468.1| PREDICTED: LOW QUALITY PROTEIN: DNA-directed RNA polymerase,
mitochondrial [Callithrix jacchus]
Length = 1294
Score = 383 bits (984), Expect = e-103, Method: Compositional matrix adjust.
Identities = 229/621 (36%), Positives = 354/621 (57%), Gaps = 38/621 (6%)
Query: 340 KRVMEAQKLLKNEETKPWGRDTQAKLGSRLVELLIETAYVQHPVNPADYSPPDVRPAFRH 399
++ EA + + + +PW Q +LG L E+L++ + P N A +P
Sbjct: 609 RQYWEALGVSEPPQEQPWPLPVQVELGRLLAEILVQA--TKMPSNLA-------KPRNSS 659
Query: 400 RFKTILKHPGQ-KTTKRYGVVECDPLVLEGLDRSAKHMLI---PYVPMLVPPKKWKGYNK 455
R +L H + + G ++ P ++ L +A+ + VPML PP W +
Sbjct: 660 RLVPLLYHVYSFRNVYQIGFLKPHPAYVQLLATAAEPTVTFEAVDVPMLCPPLPWTSPHT 719
Query: 456 GGYLFLPSYVMR-THGSRKQQEALKSVTGNCMKKVFEALDTLGSTKWRVNKQVLSVLESI 514
G +L P+ +MR G+ Q L++ + + L LG+ WRVN +VL ++ +
Sbjct: 720 GAFLLNPTKLMRAVDGTMHHQRLLENCPPAALHGALDTLTQLGNCAWRVNGRVLDLVLEL 779
Query: 515 WVSGG--NIAGLVDRNDVLIP-EKPL--SEDMTEVQKWKWSVRKAKKINQERHSQRCDTE 569
+ G ++ ++V P E PL S + + + + + ++ K ++E HS R D
Sbjct: 780 FQDKGCPKLSVPAPPSEVAAPHEAPLPSSTGLVDKAELRRELARSLKESREMHSLRADAL 839
Query: 570 LKLSVARRMKDEEGFYYPHNLDFRGRAYPMHPHLNHLSSDVCRGVLEFAEGRPLGKSGLR 629
+LS+A +++ F+ PHN+DFRGR YP PH NHL +D+ R +LEFA+G PLG GL
Sbjct: 840 YRLSLADHLRNCV-FWLPHNMDFRGRTYPCPPHFNHLGNDLARALLEFAQGCPLGPHGLD 898
Query: 630 WLKIHLANLFSGGVEKLSHDGRLAFVENHLYEIFDSAENPINGSRWWLTAEDPFQCLAAC 689
WLKIH+ NL +G ++ R AF E + +I DSA+NP+ G +WW+ +E+P+Q LA C
Sbjct: 899 WLKIHVVNL-TGLKKREPLQVRHAFAEEVMDDILDSADNPMTGRKWWMGSEEPWQTLACC 957
Query: 690 INLSEALKSSSPHSVISHLPIHQDGSCNGLQHYAALGRNTLEAAAVNLVAGEKPADVYSE 749
+ +++A+++S P + ISHLP+HQDGSCNGLQHYAALGR+++ AA+VNL + P DVYS+
Sbjct: 958 MEIAKAVRTSDPAAYISHLPVHQDGSCNGLQHYAALGRDSVGAASVNLEPSDVPQDVYSD 1017
Query: 750 IAVRVHEIMKRDSNKDPSKHPQALLAKILIDQVDRKLVKQTVMTSVYGVTFVGAREQIKR 809
+A +V E+ +R + S+ +A++L V RK+VKQTVMT VYGVT G R QI++
Sbjct: 1018 VAAQV-EVFRRQDARRGSR-----VAQVLEGFVTRKVVKQTVMTVVYGVTRFGGRLQIEK 1071
Query: 810 RLEEKGHITDDRQLFAAACYAAKVTLTALGEIFEAARSIMGWLGDCAKVIASENQPVRWT 869
RL E + L+ A+ Y + +L E+F +R+I WL + A++I+ V W
Sbjct: 1072 RLREMSDFPQEF-LWDASHYLVRQVFKSLQEMFSGSRAIQHWLTESARLISHMGSAVEWV 1130
Query: 870 TPLGLPVVQPYC------KNERHLIRTSLQVLALQREGNLVKIR-KQRTAFPPNFVHSLD 922
TPLG+P++QPY + R L S V A + +L + KQR FPPNF+HSLD
Sbjct: 1131 TPLGIPIIQPYHQEVKVKQGGRGLQSVSYSVNA---DSSLKPNKLKQRNGFPPNFIHSLD 1187
Query: 923 GSHMMMTAVACRDAGLHFAGL 943
+HMM+TA+ C GL F +
Sbjct: 1188 STHMMLTALHCYREGLTFVSV 1208
>gi|91088063|ref|XP_967600.1| PREDICTED: similar to CG4644 CG4644-PA, partial [Tribolium castaneum]
Length = 1176
Score = 383 bits (983), Expect = e-103, Method: Compositional matrix adjust.
Identities = 207/515 (40%), Positives = 301/515 (58%), Gaps = 30/515 (5%)
Query: 441 VPMLVPPKKWKGYNKGGYLFLPSYVMRTH-GSRKQQEALKSVTGNCMKKVFEALDTLGST 499
+PM PP W + GGYL +P V+R + Q++ L + +AL+ L +
Sbjct: 591 LPMFCPPVPWTCVDNGGYLIVPCEVVRLPPQATSQKQRLYQSEVQQLYPPLDALNQLAAV 650
Query: 500 KWRVNKQVLSVLESIWVSGGNIAGLVDRNDVLIPEKP--------LSEDMTEVQKWKWSV 551
W+VN VL V+ ++ +GG+ + +PE P ++ DM + QK+K
Sbjct: 651 AWKVNTDVLDVILEVFNNGGSAK-------LDVPEPPTALARPQAITNDMDKAQKFKLFR 703
Query: 552 RKA--KKINQERHSQRCDTELKLSVARRMKDEEGFYYPHNLDFRGRAYPMHPHLNHLSSD 609
+K ++ E +S CD +LS+A + + F+ PHN+DFRGR YP+ PHLNHL SD
Sbjct: 704 QKLQYRRKKAEMYSLWCDCLYRLSLANHFR-SDIFWLPHNMDFRGRVYPVPPHLNHLGSD 762
Query: 610 VCRGVLEFAEGRPLGKSGLRWLKIHLANLFSGGVEKLSHDGRLAFVENHLYEIFDSAENP 669
+ R +L FAE RPLG GL WLK+HL NL +G ++ S RLA+ + + +I DSA++P
Sbjct: 763 LARSMLVFAESRPLGPDGLNWLKLHLINL-TGLKKRDSITDRLAYADTIMDDILDSADSP 821
Query: 670 INGSRWWLTAEDPFQCLAACINLSEALKSSSPHSVISHLPIHQDGSCNGLQHYAALGRNT 729
+ G +WW +E+P+Q LA CI +++A +S +P + SH P+HQDGSCNGLQHYAALGR++
Sbjct: 822 LTGRQWWAESEEPWQTLACCIEIAKATRSGNPETYRSHFPVHQDGSCNGLQHYAALGRDS 881
Query: 730 LEAAAVNLVAGEKPADVYSEIAVRVHEIMKRDSNKDPSKHPQALLAKILIDQVDRKLVKQ 789
A +VNL E P DVYS + V + D+ +AK L V RK++KQ
Sbjct: 882 AGAYSVNLCPSEVPQDVYSAVVALVEQQRLVDAANGVE------VAKALHGFVKRKVIKQ 935
Query: 790 TVMTSVYGVTFVGAREQIKRRLEEKGHITDDRQLFAAACYAAKVTLTALGEIFEAARSIM 849
T+MT+VYGVT GAR QI R+L++ D ++AA+ Y T +L +F + R I
Sbjct: 936 TIMTTVYGVTKYGARLQIARQLKDIDDFPKDL-VWAASSYLTGRTFDSLRSMFTSTREIQ 994
Query: 850 GWLGDCAKVIASENQPVRWTTPLGLPVVQPYCKNERHLIRTSLQVLALQR-EGNLVKIRK 908
W DCA++I+ Q V W TP+GLP+VQPY + + + TSL E + K
Sbjct: 995 DWFTDCARLISMSGQHVEWVTPMGLPIVQPYIRYKN--LGTSLVYKPYHMDEFEKPNVMK 1052
Query: 909 QRTAFPPNFVHSLDGSHMMMTAVACRDAGLHFAGL 943
Q+ AFPPNF+HSLD SHMM+T++ C AG+ F +
Sbjct: 1053 QKNAFPPNFIHSLDSSHMMLTSLFCERAGITFVSV 1087
>gi|270012086|gb|EFA08534.1| hypothetical protein TcasGA2_TC006188 [Tribolium castaneum]
Length = 1258
Score = 382 bits (982), Expect = e-103, Method: Compositional matrix adjust.
Identities = 226/608 (37%), Positives = 335/608 (55%), Gaps = 48/608 (7%)
Query: 355 KPWGRDTQAKLGSRLVELLIETAYVQHPVNPADYSPPDVRPAFRHRFKT---ILKHPGQK 411
+ W T +G L ++++ V A+ + PAF F+T +LK
Sbjct: 591 RTWSPSTLQTIGKFLYKIVMHDLKVDVNAMKANIKHKNNHPAFYTVFRTQGRVLKEE--- 647
Query: 412 TTKRYGVVECDPLVLEGLDRSAKHMLIPY----VPMLVPPKKWKGYNKGGYLFLPSYVMR 467
V+ P VL L R++ + + +PM PP W + GGYL +P V+R
Sbjct: 648 -------VKPHP-VLARLFRASMPETLTFPANELPMFCPPVPWTCVDNGGYLIVPCEVVR 699
Query: 468 TH-GSRKQQEALKSVTGNCMKKVFEALDTLGSTKWRVNKQVLSVLESIWVSGGNIAGLVD 526
+ Q++ L + +AL+ L + W+VN VL V+ ++ +GG+
Sbjct: 700 LPPQATSQKQRLYQSEVQQLYPPLDALNQLAAVAWKVNTDVLDVILEVFNNGGSAK---- 755
Query: 527 RNDVLIPEKP--------LSEDMTEVQKWKWSVRKA--KKINQERHSQRCDTELKLSVAR 576
+ +PE P ++ DM + QK+K +K ++ E +S CD +LS+A
Sbjct: 756 ---LDVPEPPTALARPQAITNDMDKAQKFKLFRQKLQYRRKKAEMYSLWCDCLYRLSLAN 812
Query: 577 RMKDEEGFYYPHNLDFRGRAYPMHPHLNHLSSDVCRGVLEFAEGRPLGKSGLRWLKIHLA 636
+ + F+ PHN+DFRGR YP+ PHLNHL SD+ R +L FAE RPLG GL WLK+HL
Sbjct: 813 HFR-SDIFWLPHNMDFRGRVYPVPPHLNHLGSDLARSMLVFAESRPLGPDGLNWLKLHLI 871
Query: 637 NLFSGGVEKLSHDGRLAFVENHLYEIFDSAENPINGSRWWLTAEDPFQCLAACINLSEAL 696
NL +G ++ S RLA+ + + +I DSA++P+ G +WW +E+P+Q LA CI +++A
Sbjct: 872 NL-TGLKKRDSITDRLAYADTIMDDILDSADSPLTGRQWWAESEEPWQTLACCIEIAKAT 930
Query: 697 KSSSPHSVISHLPIHQDGSCNGLQHYAALGRNTLEAAAVNLVAGEKPADVYSEIAVRVHE 756
+S +P + SH P+HQDGSCNGLQHYAALGR++ A +VNL E P DVYS + V +
Sbjct: 931 RSGNPETYRSHFPVHQDGSCNGLQHYAALGRDSAGAYSVNLCPSEVPQDVYSAVVALVEQ 990
Query: 757 IMKRDSNKDPSKHPQALLAKILIDQVDRKLVKQTVMTSVYGVTFVGAREQIKRRLEEKGH 816
D+ +AK L V RK++KQT+MT+VYGVT GAR QI R+L++
Sbjct: 991 QRLVDAANGVE------VAKALHGFVKRKVIKQTIMTTVYGVTKYGARLQIARQLKDIDD 1044
Query: 817 ITDDRQLFAAACYAAKVTLTALGEIFEAARSIMGWLGDCAKVIASENQPVRWTTPLGLPV 876
D ++AA+ Y T +L +F + R I W DCA++I+ Q V W TP+GLP+
Sbjct: 1045 FPKDL-VWAASSYLTGRTFDSLRSMFTSTREIQDWFTDCARLISMSGQHVEWVTPMGLPI 1103
Query: 877 VQPYCKNERHLIRTSLQVLALQ-REGNLVKIRKQRTAFPPNFVHSLDGSHMMMTAVACRD 935
VQPY + + + TSL E + KQ+ AFPPNF+HSLD SHMM+T++ C
Sbjct: 1104 VQPYIRYKN--LGTSLVYKPYHMDEFEKPNVMKQKNAFPPNFIHSLDSSHMMLTSLFCER 1161
Query: 936 AGLHFAGL 943
AG+ F +
Sbjct: 1162 AGITFVSV 1169
>gi|322785441|gb|EFZ12112.1| hypothetical protein SINV_03744 [Solenopsis invicta]
Length = 1179
Score = 381 bits (978), Expect = e-102, Method: Compositional matrix adjust.
Identities = 258/751 (34%), Positives = 384/751 (51%), Gaps = 70/751 (9%)
Query: 222 GWFGPLSEAIER-----EQKMQRTKKQKAAYAPHIELLPADKVAVIVMHKMMGLVMAGHE 276
W +++A ER +QK + K P +++LP ++ +++++ L E
Sbjct: 383 SWKSSVAQAFERNLTYLKQKETKMKTDFKILYPFLQVLPKEEYINAILNEISQLTKFS-E 441
Query: 277 DRCVQVVQAAVHIGMAIEQEIRIHSFLEKTKNYKRKKIIADTEEVLSKEKE-LLRKRVNS 335
+ + +G I + + F +K K+ II ++ EV K E ++K +
Sbjct: 442 GYSYTMTHLYLTLGTYIYKR---YEFQQKMKD----GIIENSIEVYKKYLEWYMQKDSDD 494
Query: 336 LIKSKRVMEAQKLLKNEETKP----------WGRDTQAKLGSRLVELLIETAYVQHPVNP 385
I + RV Q L +E K W R+T +G L +++ + H P
Sbjct: 495 KIGNGRVKWQQ--LVHEAGKSGICCEMAVPEWSRNTLINVGKFLYNIIVNDVKIPHVPKP 552
Query: 386 ADYSPPDVRPAFR-----HRFKTILKH--PGQKTTKRYGVVECDPLVLEGLDRSAKHMLI 438
+P PAF H K +++ P + Y + L E +
Sbjct: 553 G--APERQIPAFYLLFRLHSNKFLMEEIKPHPHLHRFYKDSHSETLSFETIS-------- 602
Query: 439 PYVPMLVPPKKWKGYNKGGYLFLPSYVMRTHGSRKQQEALKSVTGNCMKKVFEALDTLGS 498
+P PP+ W N GGYL +R K LK+ + V + ++ LGS
Sbjct: 603 --LPTFSPPRPWIDINTGGYLLSKVPFVRD-IYMKPSRLLKNTPTKQLYPVLDCVNQLGS 659
Query: 499 TKWRVNKQVLSVLESIWVSGGNIAGLVDRNDVLIPEKPLSEDMT-EVQKWKWSVRKA--- 554
WR+N +L +L I+ GG+ V + ++P SE ++ E K + K
Sbjct: 660 IPWRINVPILDILIQIFREGGSKELNVPQPSTVVPSS--SEVISNETDKNSREIAKLLLQ 717
Query: 555 -KKINQERHSQRCDTELKLSVARRMKDEEGFYYPHNLDFRGRAYPMHPHLNHLSSDVCRG 613
K+ E ++ CD KLS+A +D+ F+ PHNLDFRGRAYP+ PHL HLSSD+ R
Sbjct: 718 LKRTRNEMYALWCDCLYKLSLANHFRDK-VFWMPHNLDFRGRAYPIPPHLTHLSSDLGRS 776
Query: 614 VLEFAEGRPLGKSGLRWLKIHLANLFSGGVEKLSHDGRLAFVENHLYEIFDSAENPINGS 673
+L FA+G+PLG GL WLKIH N+ +G ++ RL F L I DSA NP+ G
Sbjct: 777 ILMFAQGKPLGPEGLDWLKIHTINM-TGLKKREPMHKRLEFANKILDLIVDSARNPLTGE 835
Query: 674 RWWLTAEDPFQCLAACINLSEALKSSSPHSVISHLPIHQDGSCNGLQHYAALGRNTLEAA 733
WW A++P+Q LAAC + AL++ +P I LPIHQDGSCNGLQHYAALGR+ + A
Sbjct: 836 MWWAKADEPWQTLAACKEIDNALQAPNPEKYICRLPIHQDGSCNGLQHYAALGRDLIGAK 895
Query: 734 AVNLVAGEKPADVYSEIAVRVHEIMKRDSNKDPSKHPQALLAKILIDQVDRKLVKQTVMT 793
+VNL ++P DVYS +A V E K D+ +A+ L V RK++KQTVMT
Sbjct: 896 SVNLYPSDRPQDVYSVVANMVDEYRKIDAEAGNK------IARALEGHVSRKVMKQTVMT 949
Query: 794 SVYGVTFVGAREQIKRRLEEKGHITDDRQLFAAACYAAKVTLTALGEIFEAARSIMGWLG 853
+VYGVT GAR QI R+L + D + +++ + Y + T +L +FE+A+ I W
Sbjct: 950 TVYGVTKFGARLQIARQLSDLKDF-DQKYVWSGSMYLVEKTFMSLQSMFESAKEIQNWFT 1008
Query: 854 DCAKVIASE-NQPVRWTTPLGLPVVQPYCKNERHLIRTSLQVLALQREGNLVKIRKQRTA 912
DCA+VI NQ ++W TPLGLPV+QPY K+ + I ++V R+ + V KQ+ A
Sbjct: 1009 DCARVITIRCNQYIQWVTPLGLPVIQPYSKHSK-TINPKIKVF---RKLDTV---KQKNA 1061
Query: 913 FPPNFVHSLDGSHMMMTAVACRDAGLHFAGL 943
F PNF+HSLD HMM+T++ AG+ F +
Sbjct: 1062 FAPNFIHSLDSCHMMLTSLYSEQAGITFMSV 1092
>gi|348550224|ref|XP_003460932.1| PREDICTED: LOW QUALITY PROTEIN: DNA-directed RNA polymerase,
mitochondrial-like [Cavia porcellus]
Length = 1267
Score = 380 bits (977), Expect = e-102, Method: Compositional matrix adjust.
Identities = 205/521 (39%), Positives = 299/521 (57%), Gaps = 29/521 (5%)
Query: 441 VPMLVPPKKWKGYNKGGYLFLPSYVMRTHGSRKQQEA-LKSVTGNCMKKVFEALDTLGST 499
+PML PP W GG+L P +M + G + L+S + EAL LG+
Sbjct: 680 MPMLCPPLPWSSSQAGGFLLSPIKLMGSLGGPSSTSSRLESCPPAQLHGALEALTQLGNC 739
Query: 500 KWRVNKQVLSVLESIWVSGGNIAGLVDRNDVLIPEKPLSEDMTEVQ-----KWKWSVRKA 554
WRVN ++L ++ +++ G V P PL + + Q + + V +
Sbjct: 740 AWRVNGRLLDLVLEVFLDKGCCRLGVPPPVSEAPRPPLDQLAPDTQPHLKAQLRQEVARC 799
Query: 555 KKINQERHSQRCDTELKLSVARRMKDEEGFYYPHNLDFRGRAYPMHPHLNHLSSDVCRGV 614
K+ +E H R + +LS+A+ ++D F+ PHN+DFRGR YP PH NHL SD+ R +
Sbjct: 800 LKVAREMHGLRQEALYRLSLAQHLRDRV-FWLPHNMDFRGRTYPCPPHFNHLGSDLARAL 858
Query: 615 LEFAEGRPLGKSGLRWLKIHLANLFSGGVEKLSHDGRLAFVENHLYEIFDSAENPINGSR 674
LEFA+GRPLG GL WLKIHL NL +G ++ RL+F + + +I DSAE P+ G +
Sbjct: 859 LEFAQGRPLGPRGLDWLKIHLVNL-TGLKKREPLHARLSFADAMMDDILDSAERPMTGRK 917
Query: 675 WWLTAEDPFQCLAACINLSEALKSSSPHSVISHLPIHQDGSCNGLQHYAALGRNTLEAAA 734
WW+ A+DP+Q LA C+ ++ A++S P + +SHLP+HQDGSCNGLQHYAALGR+++ AA+
Sbjct: 918 WWMEADDPWQTLACCMEVARAVQSPDPAAYVSHLPVHQDGSCNGLQHYAALGRDSVGAAS 977
Query: 735 VNLVAGEKPADVYSEIAVRVHEIMKRDSNKDPSKHPQALLAKILIDQVDRKLVKQTVMTS 794
VNL + + P DVYS +A +V +D+ K +A++L + RK+VKQTVMT
Sbjct: 978 VNLASSDVPQDVYSGVAAQVEVFRAQDAQKG------VKVAQVLEGFIGRKVVKQTVMTV 1031
Query: 795 VYGVTFVGAREQIKRRLEEKGHITDDRQLFA--AACYAAKVTLTALGEIFEAARSIMGWL 852
VYGVT G R QI++RL E + Q+F A+ Y + +L E+F R+I WL
Sbjct: 1032 VYGVTLYGGRLQIEKRLRE---LPTFPQVFVWEASRYLVHLVFKSLREMFSGTRTIQHWL 1088
Query: 853 GDCAKVIASENQPVRWTTPLGLPVVQPYCKNERHL-------IRTSLQVLALQREGNLVK 905
A++I+ V W TPLG+P++QPY + + + IR LQ + + +
Sbjct: 1089 TQSARLISQAGSAVEWVTPLGIPIIQPYHRESKLVVIPPCPQIRGGLQSVTWNSSVDSSQ 1148
Query: 906 ---IRKQRTAFPPNFVHSLDGSHMMMTAVACRDAGLHFAGL 943
KQ+ FPPNF+HSLD HMM+TA+ C GL F +
Sbjct: 1149 QPNTLKQKNGFPPNFIHSLDSCHMMLTALHCYRKGLTFVSV 1189
>gi|390342830|ref|XP_001198516.2| PREDICTED: DNA-directed RNA polymerase, mitochondrial-like
[Strongylocentrotus purpuratus]
Length = 1480
Score = 380 bits (976), Expect = e-102, Method: Compositional matrix adjust.
Identities = 213/563 (37%), Positives = 325/563 (57%), Gaps = 34/563 (6%)
Query: 395 PAFRHRFKTILKHPGQKTTKRYGVVECDPLVLEGLDRSAKHMLIPY----VPMLVPPKKW 450
PA H + ++ K G ++ P +++ L ++AK + + +PML PP W
Sbjct: 849 PALYHMYT-------YRSFKHVGFIKPHPTLVD-LFQTAKDPNLEFDTNMLPMLTPPIPW 900
Query: 451 KGYNKGGYLFLPSYVMRT-HGSRKQQEALKSVTGNCMKKVFEALDTLGSTKWRVNKQVLS 509
G Y + +MR+ G+ + + L+ + + +AL+ L + W +NK +L
Sbjct: 901 TSVRFGAYPLSSTKIMRSKDGAHQHLDLLEKTPPQELYPILDALNQLSTVPWIINKPILD 960
Query: 510 VLESIWVSGGNIAGLVDRNDVLIPEKPL------SEDMTEVQKWKWSVRKAKKINQERHS 563
+ S++ + G+ A V + P P E++ ++ + + + A+K+ E HS
Sbjct: 961 TVISVFRNSGSKALDVPQPASACPHPPRITSEVSREELAQIHRERAA---ARKMQAEMHS 1017
Query: 564 QRCDTELKLSVARRMKDEEGFYYPHNLDFRGRAYPMHPHLNHLSSDVCRGVLEFAEGRPL 623
R D KLS+A ++++E F++PHN+DFRGR YP PH NH +DV R +L FA G PL
Sbjct: 1018 LRMDMLYKLSIADKVRNE-IFWFPHNMDFRGRVYPCPPHFNHFGNDVTRSLLLFARGMPL 1076
Query: 624 GKSGLRWLKIHLANLFSGGVEKLSHDGRLAFVENHLYEIFDSAENPINGSRWWLTAEDPF 683
G+ G RWLKIHL NL +G ++ S + RL + + L EI DSA+ P++G++WW +++ +
Sbjct: 1077 GEEGFRWLKIHLVNL-TGHKKRCSVEERLQYAHDMLPEIMDSADKPLDGNKWWQNSDEQW 1135
Query: 684 QCLAACINLSEALKSSSPHSVISHLPIHQDGSCNGLQHYAALGRNTLEAAAVNLVAGEKP 743
Q LA+C+ +++A++S P S ISHLPIHQDGSCNGLQHYAALGR+ + A VNL + P
Sbjct: 1136 QTLASCMEVTKAIRSGDPTSYISHLPIHQDGSCNGLQHYAALGRDLIGAEQVNLHPFDIP 1195
Query: 744 ADVYSEIAVRVHEIMKRDSNKDPSKHPQALLAKILIDQVDRKLVKQTVMTSVYGVTFVGA 803
DVYS +A V E+ ++D+ K +A L + R +VKQTVMT VYGVT G
Sbjct: 1196 QDVYSGVAQMVEELRRQDAEKGNK------IALALAGHIKRNVVKQTVMTVVYGVTSYGG 1249
Query: 804 REQIKRRLEEKGHITDDRQLFAAACYAAKVTLTALGEIFEAARSIMGWLGDCAKVIASEN 863
R QI ++L E+ +T D++ FAA KV +L ++F R I +L + A +I+
Sbjct: 1250 RRQILKQLREEDDLTMDQKWFAAGYITLKV-FQSLRKMFTKTREIQDYLTESAWLISKAG 1308
Query: 864 QPVRWTTPLGLPVVQPYCKNERHLI-RTSLQVLALQREGNLVK--IRKQRTAFPPNFVHS 920
+ V W TPLGLP+VQPY K LI V +R + KQ+ AFPPNF+HS
Sbjct: 1309 ETVEWVTPLGLPIVQPYHKKSLKLISHGGRNVYHEERHSQAERPDTMKQKNAFPPNFIHS 1368
Query: 921 LDGSHMMMTAVACRDAGLHFAGL 943
LD +HMM+T++ + AG+ FA +
Sbjct: 1369 LDSTHMMLTSLYSQRAGIAFASV 1391
>gi|157124670|ref|XP_001654145.1| hypothetical protein AaeL_AAEL001847 [Aedes aegypti]
gi|108882774|gb|EAT46999.1| AAEL001847-PA [Aedes aegypti]
Length = 1271
Score = 379 bits (974), Expect = e-102, Method: Compositional matrix adjust.
Identities = 215/572 (37%), Positives = 323/572 (56%), Gaps = 42/572 (7%)
Query: 391 PDVRPAFRHRFKTILKHPGQKTTKRYGVVECDPLVLEGLDRSAKHML---IPYVPMLVPP 447
P + PAF F+ K ++ ++ P++++ +S + L I VPM+ PP
Sbjct: 634 PKLVPAFYSLFRYEAKIAKEQ-------IKPHPVLIKLYRKSQQENLKFDINLVPMVCPP 686
Query: 448 KKWKGYNKGGYLFLPSYVMRT-HGSRKQQEALKSVTGNCMKKVFEALDTLGSTKWRVNKQ 506
+ W GGY+ S ++R + +Q E + M +AL+ L S W+VN++
Sbjct: 687 QPWSTPVNGGYILAKSDLIRLPQQAHQQSERINEANPQDMYPTLDALNQLASIPWKVNEE 746
Query: 507 VLSVLESIWVSGGNIAGLVDRNDVLIPEKPLS----------EDMTEVQKWKWSVRKA-- 554
VL ++ ++ +GGN + +PE P S +MT ++ +K
Sbjct: 747 VLDIVLEVFNNGGNAK-------LDVPEPPSSLPSIVETIPRNEMTGFDRFNMVRKKMTH 799
Query: 555 KKINQERHSQRCDTELKLSVARRMKDEEGFYYPHNLDFRGRAYPMHPHLNHLSSDVCRGV 614
++ + +S CD +LS+A +D+ F+ P N+DFRGR YP+ PHLNHL D+ R +
Sbjct: 800 RRKQGDMYSLWCDALYRLSLANHFRDK-VFWLPQNIDFRGRVYPIPPHLNHLGHDLARCL 858
Query: 615 LEFAEGRPLGKSGLRWLKIHLANLFSGGVEKLSHDGRLAFVENHLYEIFDSAENPINGSR 674
+ F + +PLG G WLK+H NL +G ++ S + RL + + + +I DSA+ P+ G
Sbjct: 859 MVFHQKKPLGPDGFNWLKLHCINL-TGLKKRDSVEDRLKYADEIMDDILDSADRPLTGRM 917
Query: 675 WWLTAEDPFQCLAACINLSEALKSSSPHSVISHLPIHQDGSCNGLQHYAALGRNTLEAAA 734
WW ++++P+Q LA CI +++ +S +P +S PIHQDGSCNGLQHYAALGR+T A +
Sbjct: 918 WWSSSDEPWQTLACCIEIAKVHRSPNPAKFMSGFPIHQDGSCNGLQHYAALGRDTAGAVS 977
Query: 735 VNLVAGEKPADVYSEIAVRVHEIMKRDSNKDPSKHPQALLAKILIDQVDRKLVKQTVMTS 794
VNL P DVYS +A V + +D+ D +AKIL + RK++KQTVMT+
Sbjct: 978 VNLAPSPVPQDVYSAVAALVEDSRTKDAEND------VKVAKILEGFIKRKVIKQTVMTT 1031
Query: 795 VYGVTFVGAREQIKRRLEEKGHITDDRQLFAAACYAAKVTLTALGEIFEAARSIMGWLGD 854
VYGVT GAR+QI R+LE D ++ A+ Y T AL E+F +A+ I W D
Sbjct: 1032 VYGVTRYGARKQIARQLEYIDEFPKD-WVWPASSYLTVKTFNALSEMFTSAKEIQDWFTD 1090
Query: 855 CAKVIASE-NQPVRWTTPLGLPVVQPYCKNERHLIRTSLQVLALQREGNLVK--IRKQRT 911
CA++I++ Q V W TPLGLPVVQPY ++ER ++Q+ + K I KQ+
Sbjct: 1091 CARLISAVCAQNVEWVTPLGLPVVQPYNRSERQASSKTIQIPEHFSMDSYEKPNIMKQKN 1150
Query: 912 AFPPNFVHSLDGSHMMMTAVACRDAGLHFAGL 943
AFPPNFVHSLD SHMM+T++ C AGL F +
Sbjct: 1151 AFPPNFVHSLDSSHMMLTSLFCERAGLTFISV 1182
>gi|307191463|gb|EFN75004.1| DNA-directed RNA polymerase, mitochondrial [Camponotus floridanus]
Length = 1223
Score = 379 bits (973), Expect = e-102, Method: Compositional matrix adjust.
Identities = 231/601 (38%), Positives = 328/601 (54%), Gaps = 48/601 (7%)
Query: 357 WGRDTQAKLGSRLVELLIETAYVQHPVNPADYSPPDVRPAFRHRFKTILKHPGQKTTKRY 416
W R+ +G L ++++ + H P D S + PAF F+ K T +
Sbjct: 570 WPRNVLLNVGEFLYKIILNDVKISHVPKP-DTSERQI-PAFYALFR--------KQTNNF 619
Query: 417 GVVECDPL-VLEGLDRSAKHMLIPY----VPMLVPPKKWKGYNKGGYLFLPSYVMRTHGS 471
E P L L + + + + +P PP+ W + GGYLF + +R
Sbjct: 620 LTEEIKPHPYLHRLYKDSHPETLTFETVLLPTCSPPRPWIDIDTGGYLFSKTSFIR-DPY 678
Query: 472 RKQQEALKSVTGNCMKKVFEALDTLGSTKWRVNKQVLSVLESIWVSGGNIAGLVDRNDV- 530
L++ + F+ L+ LGS WR+N +L +L I+ GG+ ++ DV
Sbjct: 679 MTPTILLRNTPMKQLYPAFDCLNQLGSIPWRINVPMLDILIKIFREGGS-----EKLDVP 733
Query: 531 -------LIPEKPLSEDMTEVQKWKWSVRKAKKINQERHSQRCDTELKLSVARRMKDEEG 583
+ E S D+ + +K K + + +K N E ++ CD+ KLSVA +D+
Sbjct: 734 QSPSSLPSLSELITSSDIDKSKKMKLAFQLRRKKN-EMYALWCDSLYKLSVANHFRDK-V 791
Query: 584 FYYPHNLDFRGRAYPMHPHLNHLSSDVCRGVLEFAEGRPLGKSGLRWLKIHLANLFSGGV 643
F+ PHNLDFRGRAYP+ PHL HL+SD+ R +L FA+G+PLG GL WLKIH NL +G
Sbjct: 792 FWLPHNLDFRGRAYPVPPHLTHLASDLSRSILLFAQGKPLGPKGLDWLKIHTINL-TGMK 850
Query: 644 EKLSHDGRLAFVENHLYEIFDSAENPINGSRWWLTAEDPFQCLAACINLSEALKSSSPHS 703
+K S D RL F L I DSA NP+ G WW +++P+Q LAAC + AL+S
Sbjct: 851 KKESIDQRLKFANEILDLIVDSARNPLTGEMWWTKSDEPWQTLAACKEIDNALQSPDVEK 910
Query: 704 VISHLPIHQDGSCNGLQHYAALGRNTLEAAAVNLVAGEKPADVYSEIAVRVHEIMKRDSN 763
I LPIHQDGSCNGLQHYAALGR+ + A +VNL P DVYS +A V E K D+
Sbjct: 911 YICRLPIHQDGSCNGLQHYAALGRDQIGAESVNLYPSNTPQDVYSVVANMVDEYRKIDAE 970
Query: 764 KDPSKHPQALLAKILIDQVDRKLVKQTVMTSVYGVTFVGAREQIKRRLEEKGHITDDRQL 823
+AK L V RK++KQTVMT+VYGVT G R QI R+L + D
Sbjct: 971 AGDK------VAKALEGFVTRKVIKQTVMTTVYGVTKFGGRLQIARQLSDLKEFNQDYT- 1023
Query: 824 FAAACYAAKVTLTALGEIFEAARSIMGWLGDCAKVIASE-NQPVRWTTPLGLPVVQPYCK 882
++ + Y + T +L +F A+ I W DCA+VI++ NQ V+W TPLGLPV+QPY K
Sbjct: 1024 WSGSLYLVEKTFQSLRTMFTGAKEIQDWFTDCARVISTRCNQYVQWVTPLGLPVLQPYFK 1083
Query: 883 NERHLIRTSLQVLALQREGNLVKIRKQRTAFPPNFVHSLDGSHMMMTAVACRDAGLHFAG 942
++++ Q +++ + KQ+ AFPPNF+HSLD SHMM+T++ C AG+ F
Sbjct: 1084 R----VKSANQNKLVRKPDTM----KQKNAFPPNFIHSLDSSHMMLTSLYCEQAGITFMS 1135
Query: 943 L 943
+
Sbjct: 1136 V 1136
>gi|242009042|ref|XP_002425302.1| DNA-directed RNA polymerase, putative [Pediculus humanus corporis]
gi|212509067|gb|EEB12564.1| DNA-directed RNA polymerase, putative [Pediculus humanus corporis]
Length = 1102
Score = 378 bits (971), Expect = e-102, Method: Compositional matrix adjust.
Identities = 212/555 (38%), Positives = 324/555 (58%), Gaps = 37/555 (6%)
Query: 401 FKTILKHPGQKTTKRYGVVECDPLVLEGLDR-SAKHMLIPY--VPMLVPPKKWKGYNKGG 457
F TI++ +K+ + ++C P++ + + + H+ IP PM+ PPK WK GG
Sbjct: 495 FYTIMRQEKEKSLEE---IKCHPIISKLYQQCNLDHLYIPAKECPMVCPPKPWKSVTDGG 551
Query: 458 YLFLPSYVMRTHGSRKQQEA-LKSVTGNCMKKVFEALDTLGSTKWRVNKQVLSVLESIWV 516
YL S +R Q K + + + F+AL+TL +T W VNK+VL V ++
Sbjct: 552 YLLSTSDFVRVPKEPNSQILDFKPINSHQLYVTFDALNTLQNTPWIVNKEVLDVALEVFQ 611
Query: 517 SGGNIAGLVDRNDVLIP---EKPL--SEDMTEVQKWKWSVRKAKKINQERHSQR---CDT 568
+GG+ +D + P PL + +M++ ++++ +K K ER +Q C+
Sbjct: 612 NGGD--DELDVPSFVTPVNNHNPLNITSEMSQEERFE-EYKKKKSSAMERQNQYALWCEA 668
Query: 569 ELKLSVARRMKDEEGFYYPHNLDFRGRAYPMHPHLNHLSSDVCRGVLEFAEGRPLGKSGL 628
KLS+A ++ F+ PHN DFRGR YP+ PHL+H+ D+ R +L FA+G+PLG G
Sbjct: 669 LYKLSLANHYRNR-IFWLPHNYDFRGRVYPIPPHLSHIGGDLFRSLLIFAKGKPLGPKGF 727
Query: 629 RWLKIHLANLFSGGVEKLSHDGRLAFVENHLYEIFDSAENPINGSRWWLTAEDPFQCLAA 688
WLK H+ NL +G +K S RL + L EI DSAE P+ G++WW+ +E+P+Q LAA
Sbjct: 728 DWLKTHVINL-TGIKKKESLADRLKYANEMLPEILDSAEKPLTGNKWWVKSEEPWQTLAA 786
Query: 689 CINLSEALKSSSPHSVISHLPIHQDGSCNGLQHYAALGRNTLEAAAVNLVAGEKPADVYS 748
C+ + + LK S+P +SH P+HQDGSCNGLQHYAALGR+ A +VNL + P DVYS
Sbjct: 787 CMEIKKVLKHSNPEEYVSHFPVHQDGSCNGLQHYAALGRDYAGAKSVNLTPSQVPQDVYS 846
Query: 749 EIAVRVHEIMKRDSNKDPSKHPQALLAKILIDQVDRKLVKQTVMTSVYGVTFVGAREQIK 808
I + E+ +D+ +A+ L + RK+VKQT+MT+VYGVT GA QI
Sbjct: 847 SIIEIIEEMRAKDAENGLK------IAQKLEGYIKRKVVKQTIMTTVYGVTRYGAIRQII 900
Query: 809 RRLEEKGHITDDRQLFAAACYAAKVTLTALGEIFEAARSIMGWLGDCAKVIASENQPVRW 868
++LE+ + + L+ AA Y ++ T ++ ++F +A++I W +CA VI ++ V+W
Sbjct: 901 KQLEDIPNFP-QKDLWPAATYLSEKTFLSIQKMFTSAKTIQDWFIECAGVICNQKNFVQW 959
Query: 869 TTPLGLPVVQPYCKNERHLIRTSLQVLALQREGNLVKIRKQRTAFPPNFVHSLDGSHMMM 928
TP+GL V+QPY K ++ I ++ RKQ+ AFPPNF+HSLD SHM++
Sbjct: 960 ITPIGLLVMQPYGKPGKNPIAEPVK----------PNQRKQKNAFPPNFIHSLDSSHMVL 1009
Query: 929 TAVACRDAGLHFAGL 943
TA+ C + L FA +
Sbjct: 1010 TALHCEQSNLTFASI 1024
>gi|391337783|ref|XP_003743244.1| PREDICTED: DNA-directed RNA polymerase, mitochondrial-like
[Metaseiulus occidentalis]
Length = 1172
Score = 377 bits (969), Expect = e-101, Method: Compositional matrix adjust.
Identities = 211/514 (41%), Positives = 294/514 (57%), Gaps = 23/514 (4%)
Query: 440 YVPMLVPPKKWKGYNKGGYLF--LPSYVMRTHGSRKQQEALKSVTGNCMKKVFEALDTLG 497
++PML PPK W +L +P + Q A+ V + +AL+ L
Sbjct: 584 FLPMLCPPKPWTRPKDTPFLISGVPLIRVMPDVGEHQMCAINDVPPENIYPALDALNVLS 643
Query: 498 STKWRVNKQVLSVLESIWVSGGNIAGLVDRNDVLIPEKPLSEDMTEVQKWKWSVRKAKKI 557
T WRVN VL VL ++++ G+ V ++ P K + D+ ++ S + + +
Sbjct: 644 RTPWRVNVPVLDVLTTVFLGEGDKKLSVPKD----PAKMVQPDIAAIRAQSKSAARTRAM 699
Query: 558 N-----QERHSQRCDTELKLSVARRMKDEEGFYYPHNLDFRGRAYPMHPHLNHLSSDVCR 612
E S CD KLS+A K + F++PHN+DFRGR YP PH +HL DV R
Sbjct: 700 QFRREKAENFSLWCDMLYKLSIAHHFK-HDVFFFPHNMDFRGRVYPCPPHFHHLGGDVIR 758
Query: 613 GVLEFAEGRPLGKSGLRWLKIHLANLFSGGVEKLSHDGRLAFVENHLYEIFDSAENPING 672
G+L FAEG+PLG+ GL WLK+HL NL +G ++ + R+AF + + EI DSA+NP+ G
Sbjct: 759 GLLLFAEGKPLGEKGLWWLKLHLINL-TGFKKRRPIEERVAFADEIMDEILDSAQNPLTG 817
Query: 673 SRWWLTAEDPFQCLAACINLSEALKSSSPHSVISHLPIHQDGSCNGLQHYAALGRNTLEA 732
+WW T++DP+Q LAAC ++ AL S P I HLPIHQDGSCNGLQHYAALGR+ A
Sbjct: 818 RKWWQTSDDPWQTLAACKEIANALASPEPEKYICHLPIHQDGSCNGLQHYAALGRDLEGA 877
Query: 733 AAVNLVAGEKPADVYSEIAVRVHEIMKRDSNKDPSKHPQALLAKILIDQVDRKLVKQTVM 792
VNLV + P DVYS IA V + + DS +A IL + RK+VKQTVM
Sbjct: 878 LQVNLVPMDAPQDVYSGIADTVESLRQIDSANG------VEIATILEGHIKRKVVKQTVM 931
Query: 793 TSVYGVTFVGAREQIKRRLEEKGHITDDRQLFAAACYAAKVTLTALGEIFEAARSIMGWL 852
T VYGVT GA QI R+L++ R +AA Y T +L ++F A R I W
Sbjct: 932 TVVYGVTRFGAHLQILRQLQDLEGFPSTRA-NSAAHYLVGKTFESLEKMFSATREIQNWF 990
Query: 853 GDCAKVIA-SENQPVRWTTPLGLPVVQPY--CKNERHLIRTSLQVLALQREGNLVKIRKQ 909
CA+ I + ++PV+WTTPLGLPVVQPY +R ++ + ++ + + KQ
Sbjct: 991 TRCARTICFATDRPVQWTTPLGLPVVQPYFLTSTQRCVVESDRGKHSIVTQNSKPHGMKQ 1050
Query: 910 RTAFPPNFVHSLDGSHMMMTAVACRDAGLHFAGL 943
+ FPPN++HSLD SHMM+TA+ C AG++F +
Sbjct: 1051 KNGFPPNYIHSLDSSHMMLTAMYCEAAGINFVSV 1084
>gi|193599102|ref|XP_001946877.1| PREDICTED: DNA-directed RNA polymerase, mitochondrial-like
[Acyrthosiphon pisum]
Length = 1249
Score = 377 bits (968), Expect = e-101, Method: Compositional matrix adjust.
Identities = 216/568 (38%), Positives = 324/568 (57%), Gaps = 41/568 (7%)
Query: 395 PAFRHRFKTILKHPGQKT------TKRYGVVECDPLVLEGLDRSAKHMLIPYVPMLVPPK 448
PAF F+ +H Q+ +K Y + E + L+ + + +PML PP
Sbjct: 622 PAFYTVFRGQCQHVKQEIKPHPVLSKLYQLSEPNDLIFD----------VTMIPMLSPPV 671
Query: 449 KWKGYNKGGYLFLPSYVMRT-HGSRKQQEALKSVTGNCMKKVFEALDTLGSTKWRVNKQV 507
W N GGY+ + ++R + Q L+ + +AL+ L S W +NK V
Sbjct: 672 PWTSINSGGYIAAKADLIRLPQQAILQWHRLEQTPKQELYPALDALNQLASIPWNINKPV 731
Query: 508 LSVLESIWVSGGNIAGLVDRNDVLIPE-KPLSEDMTEVQKWKWSVRKA--KKINQERHSQ 564
L V+ ++ SGG+ + + P +P+ + M++ ++ + +A K+ E S
Sbjct: 732 LDVVLQVFRSGGSSKLDIPKPVSAFPSPQPILQSMSKDERSRLYKERAILKRQKAEMFSL 791
Query: 565 RCDTELKLSVARRMKDEEGFYYPHNLDFRGRAYPMHPHLNHLSSDVCRGVLEFAEGRPLG 624
CD +LS+A + F+ PHN+DFRGR YP PHLNHL SD+ R +L FA+G PLG
Sbjct: 792 WCDALYRLSLANHFCGK-TFWLPHNMDFRGRVYPCPPHLNHLGSDMARSLLCFAKGEPLG 850
Query: 625 KSGLRWLKIHLANLFSGGVEKLSHDGRLAFVENHLYEIFDSAENPINGSRWWLTAEDPFQ 684
+GL WLKIH NL +G ++ S RL + E L +I +SA NP+ G+ WW +E+P+Q
Sbjct: 851 SNGLNWLKIHCVNL-TGLKKRNSVKERLQYAEEILPDILNSAHNPLGGNMWWAESENPWQ 909
Query: 685 CLAACINLSEALKSSSPHSVISHLPIHQDGSCNGLQHYAALGRNTLEAAAVNLVAGEKPA 744
LA CI +S AL+ +P + ISH P+HQDGSCNGLQHYAALG++ A +VNL + P
Sbjct: 910 TLACCIEISHALQLENPENFISHFPVHQDGSCNGLQHYAALGKDFAGAVSVNLTPSDIPQ 969
Query: 745 DVYSEIAVRVHEIMKRDSNKDPSKHPQALLAKILIDQVDRKLVKQTVMTSVYGVTFVGAR 804
DVYS +A V +D+ D ++AK L V RK++KQTVMT+VYGVT GAR
Sbjct: 970 DVYSCVAAMVERERSKDAAND------VVIAKYLDGFVRRKVIKQTVMTTVYGVTRFGAR 1023
Query: 805 EQIKRRLEEKGHITDDRQLFAAACYAAKVTLTALGEIFEAARSIMGWLGDCAKVIA-SEN 863
QI ++L++ D+ +++A+ Y T +L E+F + + I W +CA+VI+ S
Sbjct: 1024 LQIAKQLKDIDSFPKDK-VWSASTYLVSKTFESLREMFTSTKEIQDWFTECARVISQSCG 1082
Query: 864 QPVRWTTPLGLPVVQPYCKNER---HLIRTSLQ-----VLALQREGNLVKIRKQRTAFPP 915
Q V W TPLGLPVVQPY + + + ++S++ +L + N++ KQ+ AFPP
Sbjct: 1083 QSVEWITPLGLPVVQPYNRRNKCYDYSKKSSVKMGEHFILDMYDRPNVM---KQKNAFPP 1139
Query: 916 NFVHSLDGSHMMMTAVACRDAGLHFAGL 943
NF+HSLD SHMM+T++ C AG+ + +
Sbjct: 1140 NFIHSLDSSHMMLTSLHCERAGITYVSV 1167
>gi|347976143|ref|XP_003437401.1| unnamed protein product [Podospora anserina S mat+]
gi|170940259|emb|CAP65486.1| unnamed protein product [Podospora anserina S mat+]
Length = 1346
Score = 377 bits (967), Expect = e-101, Method: Compositional matrix adjust.
Identities = 235/710 (33%), Positives = 374/710 (52%), Gaps = 49/710 (6%)
Query: 179 RRRQVKQETEAWERMVDEYKELEAKMIEKRLAPNLPHIKGLFLGWFGPLSEAIEREQKM- 237
R Q + E + + VD +++ M E L + P + W L I +E K+
Sbjct: 268 REIQSRLEKDTIDAAVDRWRKESQAMSEMGLGLSSPGLNARLFEWHTDLQRRISQEIKLA 327
Query: 238 -QRTKKQK--------AAYAPHIELLPADKVAVIVMHKMMGLVMAGHEDRCVQVVQAAVH 288
+ K+QK + P++ D++A +V+ ++ LV D+ V + + H
Sbjct: 328 VESEKRQKKTSDDLVRSQLTPYLLQSTPDRLAAVVILSLLSLVSTYGVDKGVPLTRVVHH 387
Query: 289 IGMAIEQEIRIHSFL-----EKTKNYKRKKIIADTEEVLSKEKELLRKRVNSLIKSKRVM 343
+ ++E++IR++ E + K ++ A T ++K ++ + + +
Sbjct: 388 LASSVEEDIRVYKATQSIPKEMARTQKAREQKAKTLLKVAKARDYYAAKRGGQEEPAQAA 447
Query: 344 EAQKLLKNEETKP-----WGRDTQAKLGSRLVELLIETAYV----QHPVNPADYSPPDVR 394
K+ ++ P W T+ K G+ L+ ++TA V +HP S ++
Sbjct: 448 NDGKVFSSDLPLPILEPRWPATTKTKFGALLLGAFLDTAKVTVVREHPETKELVS--QMQ 505
Query: 395 PAFRHRFKTILKHPGQKTTKRYGVVECDPLVLEGLDRSAK-HMLIPYVPMLVPPKKWKGY 453
PAF H + + K+ GV+ + +++ L + +L ++PM+V P+ W +
Sbjct: 506 PAFSHSTQL-------RRGKKVGVIVPNRALVDILKTEPRVEVLARHLPMVVEPEPWTKW 558
Query: 454 NKGGYLFLPSYVMRTHGSRKQQEALK--SVTGNCMKKVFEALDTLGSTKWRVNKQVLSVL 511
KGG++ P+ V+R K Q+ ++ M+++ + LD LG T WR+N++V V+
Sbjct: 559 EKGGFIEYPTSVVRAKAQEKDQQIYTEAAIERGDMEQMMKGLDVLGQTAWRINRKVFDVM 618
Query: 512 ESIWVSGGNIAGL--VDRNDVLIPEKPLSEDMTEVQKWKWSVRKAKKINQERHSQRCDTE 569
W +G +A + V+ N + PE +D + W +V+ + HSQRC
Sbjct: 619 LEAWNNGAEVANIPAVNPNLPMPPEPENLDDPLARRVWLKAVKAVENEKGGLHSQRCFMN 678
Query: 570 LKLSVARRMKDEEGFYYPHNLDFRGRAYPMHPHLNHLSSDVCRGVLEFAEGRPLGKSGLR 629
+L +AR +D+ F++PHNLDFRGRAYP+ +LNH+ +D RG+L+FA+G+PLG +GLR
Sbjct: 679 FQLEIARAFRDQT-FFFPHNLDFRGRAYPVPTYLNHMGADHMRGLLKFAKGKPLGTNGLR 737
Query: 630 WLKIHLANLFSGGVEKLSHDGRLAFVENHLYEIFDSAENPINGSRWWLTAEDPFQCLAAC 689
WLKIHLAN++ G +K S R F +L DS NP+NG+ WWL AEDP+QCLA C
Sbjct: 738 WLKIHLANVY--GFDKASLAEREEFANENLQNALDSVRNPLNGNGWWLKAEDPWQCLATC 795
Query: 690 INLSEALKSSSPHSVISHLPIHQDGSCNGLQHYAALGRNTLEAAAVNLVAGEKPADVYSE 749
L++AL+ P +SHLPIHQDG+CNGLQHYAALG + A VNL+ GE+PADVYS
Sbjct: 796 FELTDALEHPDPTKFVSHLPIHQDGTCNGLQHYAALGGDAWGAEQVNLIPGERPADVYSA 855
Query: 750 IAVRVHEIMKRDSNKDPSKHPQALLAKILIDQVDRKLVKQTVMTSVYGVTFVGAREQIKR 809
+A V + + D+++ AL KI+ RK+VKQTVMT+VYGVT GAR+QI +
Sbjct: 856 VADIVAKRIDHDADELKLDLAVALKGKIV-----RKVVKQTVMTNVYGVTRTGARKQILK 910
Query: 810 RLEE-KGHITDDRQL--FAAACYAAKVTLTALGEIFEAARSIMGWLGDCA 856
+L+ I D + A Y AL +F+ A I WLG+
Sbjct: 911 QLDALYPTIEADTGINPNVLASYCTSKVFDALSSMFKGAHDIQKWLGEIG 960
Score = 81.6 bits (200), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 40/80 (50%), Positives = 51/80 (63%), Gaps = 2/80 (2%)
Query: 866 VRWTTPLGLPVVQPYCKNERHLIRTSLQVLALQ--REGNLVKIRKQRTAFPPNFVHSLDG 923
+ WTTPL +PVVQPY +I T LQ L+L + V RKQ AFPPNF+HSLD
Sbjct: 1042 IVWTTPLRMPVVQPYRNTANRVIATCLQNLSLMDTNRSDPVNRRKQLQAFPPNFIHSLDA 1101
Query: 924 SHMMMTAVACRDAGLHFAGL 943
SHMM++A+ + GL FA +
Sbjct: 1102 SHMMLSALESDERGLTFAAV 1121
>gi|157111313|ref|XP_001651483.1| DNA-dependent RNA polymerase, putative [Aedes aegypti]
gi|108868341|gb|EAT32566.1| AAEL015297-PA [Aedes aegypti]
Length = 767
Score = 376 bits (966), Expect = e-101, Method: Compositional matrix adjust.
Identities = 215/572 (37%), Positives = 322/572 (56%), Gaps = 42/572 (7%)
Query: 391 PDVRPAFRHRFKTILKHPGQKTTKRYGVVECDPLVLEGLDRSAKHML---IPYVPMLVPP 447
P + PAF F+ K ++ ++ P++++ +S + L I VPM+ PP
Sbjct: 185 PKLVPAFYSLFRYEAKIAKEQ-------IKPHPVLIKLYRKSQQENLKFDINLVPMVCPP 237
Query: 448 KKWKGYNKGGYLFLPSYVMRT-HGSRKQQEALKSVTGNCMKKVFEALDTLGSTKWRVNKQ 506
+ W GGY+ S ++R + +Q E + M +AL+ L S W+VN++
Sbjct: 238 QPWSTPVNGGYILAKSDLIRLPQQAHQQSERINEANPQDMYPTLDALNQLASIPWKVNEE 297
Query: 507 VLSVLESIWVSGGNIAGLVDRNDVLIPEKPLS----------EDMTEVQKWKWSVRKA-- 554
VL ++ ++ +GGN + +PE P S +MT ++ +K
Sbjct: 298 VLDIVLEVFNNGGNAK-------LDVPEPPSSLPSIVETIPRNEMTGFDRFNMVRKKMTH 350
Query: 555 KKINQERHSQRCDTELKLSVARRMKDEEGFYYPHNLDFRGRAYPMHPHLNHLSSDVCRGV 614
++ + +S CD +LS+A +D+ F+ P N+DFRGR YP+ PHLNHL D+ R +
Sbjct: 351 RRKQGDMYSLWCDALYRLSLANHFRDKV-FWLPQNIDFRGRVYPIPPHLNHLGHDLARCL 409
Query: 615 LEFAEGRPLGKSGLRWLKIHLANLFSGGVEKLSHDGRLAFVENHLYEIFDSAENPINGSR 674
+ F + +PLG G WLK+H NL +G ++ S + RL + + + +I DSA+ P+ G
Sbjct: 410 MVFHQKKPLGPDGFNWLKLHCINL-TGLKKRDSVEDRLKYADEIMDDILDSADRPLTGRM 468
Query: 675 WWLTAEDPFQCLAACINLSEALKSSSPHSVISHLPIHQDGSCNGLQHYAALGRNTLEAAA 734
WW ++++P+Q LA CI +++ +S P +S PIHQDGSCNGLQHYAALGR+T A +
Sbjct: 469 WWSSSDEPWQTLACCIEIAKVHRSPDPAKFMSGFPIHQDGSCNGLQHYAALGRDTAGAVS 528
Query: 735 VNLVAGEKPADVYSEIAVRVHEIMKRDSNKDPSKHPQALLAKILIDQVDRKLVKQTVMTS 794
VNL P DVYS +A V + +D+ D +AKIL + RK++KQTVMT+
Sbjct: 529 VNLAPSPVPQDVYSAVAALVEDSRTKDAEND------VKVAKILEGFIKRKVIKQTVMTT 582
Query: 795 VYGVTFVGAREQIKRRLEEKGHITDDRQLFAAACYAAKVTLTALGEIFEAARSIMGWLGD 854
VYGVT GAR+QI R+LE D ++ A+ Y T AL E+F +A+ I W D
Sbjct: 583 VYGVTRYGARKQIARQLEYIDEFPKD-WVWPASSYLTVKTFNALSEMFTSAKEIQDWFTD 641
Query: 855 CAKVIASE-NQPVRWTTPLGLPVVQPYCKNERHLIRTSLQVLALQREGNLVK--IRKQRT 911
CA++I++ Q V W TPLGLPVVQPY ++ER ++Q+ + K I KQ+
Sbjct: 642 CARLISAVCAQNVEWVTPLGLPVVQPYNRSERQASSKTIQIPEHFSMDSYEKPNIMKQKN 701
Query: 912 AFPPNFVHSLDGSHMMMTAVACRDAGLHFAGL 943
AFPPNFVHSLD SHMM+T++ C AGL F +
Sbjct: 702 AFPPNFVHSLDSSHMMLTSLFCERAGLTFISV 733
>gi|452978725|gb|EME78488.1| hypothetical protein MYCFIDRAFT_205064 [Pseudocercospora fijiensis
CIRAD86]
Length = 1345
Score = 371 bits (953), Expect = e-99, Method: Compositional matrix adjust.
Identities = 242/677 (35%), Positives = 360/677 (53%), Gaps = 56/677 (8%)
Query: 216 IKGLFLGWFGPLSEAIEREQKMQRTKK---------QKAAYAPHIELLPADKVAVIVMHK 266
+ L W+ L A+E E +Q KK + Y P++E+LP KVA +
Sbjct: 299 MAALMWQWYRKLLPALEFE--LQEAKKTMTDMRKIDDRNVYGPYLEMLPIKKVAANTILF 356
Query: 267 MMGLVMAGHEDRCVQVVQA-------AVHIGMAIEQEIRIHSFLEKTKNYKRKKIIADTE 319
+M MA +DR V + V + +IE E + S + + + + T
Sbjct: 357 IMTR-MANGKDRSTGVYASEAKLNSLTVTLSKSIEAEC-LASVARQKASAPQNRKTNTTS 414
Query: 320 EVLSKEKELLRK---RVNSLIKSKRVMEAQKLLKNEETKPWGRDTQAKLGSRLVELLIET 376
+ + L+K + N+ K+K +Q +L E W AKLG+ LV ++E
Sbjct: 415 HIRRQAVSALKKGIDKANTSPKTKAKKASQAMLAEVE---WPLVVHAKLGAMLVSKVLEC 471
Query: 377 AYV----QHPVNPADYSPPDVRPAFRHRFKTILKHPGQKTTKRYGVVECDPLVLEGLDRS 432
A++ QHP + ++PAF HR K G+KT G++ +P +L+ L
Sbjct: 472 AHLPVTRQHPRTKEMIT--QMQPAFLHRLKY---EKGKKT----GIISPNPALLDKLQSE 522
Query: 433 AKHMLIP-YVPMLVPPKKWKGYNKGGYLFLPSYVMR-THGSRKQQEALKSVT-GNCMKKV 489
LI +PM+V PK W G++ GGYL + V+R G + +E + N + +
Sbjct: 523 PVGSLIAKRMPMVVEPKPWTGWSDGGYLHYSNPVLRLQQGDKSSKEYFMAADQNNDLDTL 582
Query: 490 FEALDTLGSTKWRVNKQVLSVLESIWVSGGNIAGLVDRND--VLIPEKPLSEDMTEVQKW 547
++ L LG W+V+++V V W SG IA N + PE S D E +KW
Sbjct: 583 YKGLTALGKVPWKVHQEVFKVQLEAWNSGEAIANFAPLNPEMKMPPEPDSSADPLERRKW 642
Query: 548 KWSVRKAKKINQERHSQRCDTELKLSVARRMKDEEGFYYPHNLDFRGRAYPMHPHLNHLS 607
+R HS+RC +L +AR + +E Y+PHN+DFRGRAYP+ P+LNH+
Sbjct: 643 LAEIRALDNKKGGYHSKRCFQNFQLEIARTLLNET-LYFPHNMDFRGRAYPIPPYLNHMG 701
Query: 608 SDVCRGVLEFAEGRPLGKSGLRWLKIHLANLFSGGVEKLSHDGRLAFVENHLYEIFDSAE 667
+D RG+L FA+G+ LG++GLRWLKIH+A + G +K S + R+ F HL +I+DS
Sbjct: 702 ADNVRGLLVFADGKELGENGLRWLKIHMATV--AGHDKASLEERVEFTMGHLDDIYDSVR 759
Query: 668 NPINGSRWWLTAEDPFQCLAACINLSEALKSSSPHSVISHLPIHQDGSCNGLQHYAALGR 727
+P+ G RWWL AED +Q LAAC L+ AL S P +SHLP+ QDG+CNGLQHYAALG
Sbjct: 760 DPLGGRRWWLQAEDAWQTLAACFELTAALDSPDPTKFVSHLPVQQDGTCNGLQHYAALGG 819
Query: 728 NTLEAAAVNLVAGEKPADVYSEIAVRVHEIMKRDSNKDPSKHPQALLAKILIDQVDRKLV 787
+ AA VNL ++PADVY+ +A V +++D + +P +A+ L ++ RK V
Sbjct: 820 DKAGAAQVNLEPSDRPADVYTAVAEAVKAEVEKDVKEG---NP---IAQKLQGRITRKCV 873
Query: 788 KQTVMTSVYGVTFVGAREQIKRRLE---EKGHITDDRQLFAAACYAAKVTLTALGEIFEA 844
KQ VMT+VYGVTF GAR Q++++LE + D L + Y A +LGE+F
Sbjct: 874 KQPVMTNVYGVTFFGARAQVRKQLEVLFPEVTEYDTVNLGNMSHYVALKIFKSLGEMFAG 933
Query: 845 ARSIMGWLGDCAKVIAS 861
A++I WLG CA I++
Sbjct: 934 AQAIQNWLGQCADRIST 950
Score = 84.7 bits (208), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 40/80 (50%), Positives = 55/80 (68%), Gaps = 2/80 (2%)
Query: 866 VRWTTPLGLPVVQPYCKNERHLIRTSLQVLALQ--REGNLVKIRKQRTAFPPNFVHSLDG 923
V WTTPL LPVVQPY + ++ TS+Q +ALQ + + V RKQ AFPPNF+HSLD
Sbjct: 1034 VVWTTPLRLPVVQPYRSAKSKIVLTSMQAIALQDPQVWDPVSRRKQLQAFPPNFIHSLDA 1093
Query: 924 SHMMMTAVACRDAGLHFAGL 943
+HM+++A+AC + FA +
Sbjct: 1094 THMLLSALACDQENMTFASI 1113
>gi|83376024|gb|ABC17816.1| mitochondrial RNA polymerase [Tigriopus californicus]
Length = 1176
Score = 370 bits (951), Expect = 1e-99, Method: Compositional matrix adjust.
Identities = 217/524 (41%), Positives = 309/524 (58%), Gaps = 42/524 (8%)
Query: 441 VPMLVPPKKWKGYNKGGYLFLPSYVMRTHGSRKQQEALKSV-TGNCMKKVFEALDTLGST 499
+PM+VPP+ W + GGYL + R R +EA+++ + N + +AL+ LGST
Sbjct: 586 LPMVVPPRPWVSDSSGGYLLHEVEMTR----RPVEEAVETPRSPNTLLPTLDALNQLGST 641
Query: 500 KWRVNKQVLSVLESIWVSGGNIAGLVDR-------NDVLIPEKPLSE----DMTEVQKWK 548
W +NK +L + ++ + R D+ P + +S+ DMT Q
Sbjct: 642 PWIINKPILECIVEVFRHPKKYNAYLKRVGIPRHPEDIEPPSEAISKAKFRDMTRDQYTA 701
Query: 549 WSVRKAKK-----INQERHSQRCDTELKLSVARRMKDEEGFYYPHNLDFRGRAYPMHPHL 603
+ +A++ + E +S CDT +LS+A+ +D Y+PHN+DFRGR YP+ P+L
Sbjct: 702 FQQGQAQRQAYIQLKAESYSLWCDTLYRLSIAQHFQDRV-LYFPHNIDFRGRVYPIPPYL 760
Query: 604 NHLSSDVCRGVLEFAEGRPLGKSGLRWLKIHLANLFSGGVEKLSHDGRLAFVENHLYEIF 663
NH+ D+ R +L FAEG+PLG GL WLK+H NL SG +K S R+ + E++L
Sbjct: 761 NHMGCDLSRSLLVFAEGKPLGPKGLDWLKLHTVNL-SGFKKKSSIRERMQYAEDNLSLFL 819
Query: 664 DSAENPINGSRWWLTAEDPFQCLAACINLSEALKSSSPHSVISHLPIHQDGSCNGLQHYA 723
DSA +P G +WWL +E+P+Q L ACI L AL SS P + ISHLPIHQDGSCNGLQHYA
Sbjct: 820 DSASDPFGGKKWWLESEEPWQTLGACIELRNALSSSDPTNYISHLPIHQDGSCNGLQHYA 879
Query: 724 ALGRNTLEAAAVNLVAGEKPADVYSEIAVRVHEIMKRDSNKDP-SKHPQALLAKILIDQV 782
A+GR++L A VNL+ E P DVY EIA I++R ++D + +P A+L L +
Sbjct: 880 AMGRDSLGAKFVNLIPSECPQDVYGEIA----SILERKRSEDAQAGNPIAIL---LNGAI 932
Query: 783 DRKLVKQTVMTSVYGVTFVGAREQIKRRLEE-KGHITDDRQLFAAACYAAKVTLTALGEI 841
RK++KQTVMT+VYGVT GA+ QI ++L++ + I +L A+ Y A T +L E+
Sbjct: 933 QRKVIKQTVMTTVYGVTKYGAKLQIAKQLKDIENPIIPSDKLGEASVYLAHRTFDSLNEM 992
Query: 842 FEAARSIMGWLGDCAKVIASE-NQPVRWTTPLGLPVVQPYCKNERHLIRTSLQVLALQRE 900
FE+++ I W CA +I+++ + V W TPLGL VQ Y K H L + +L R+
Sbjct: 993 FESSQKIQNWFISCADMISTDFFRFVEWETPLGLACVQSYQK-PLHSKNLPLGLRSLARK 1051
Query: 901 GNLVKIRKQRTAFPPNFVHSLDGSHMMMTAV-----ACRDAGLH 939
N KQR FPPNFVHSLD SHMM+TA+ C A +H
Sbjct: 1052 PN---TSKQRNGFPPNFVHSLDSSHMMLTALHMWRRGCTYASVH 1092
>gi|453081581|gb|EMF09630.1| DNA/RNA polymerase [Mycosphaerella populorum SO2202]
Length = 1450
Score = 370 bits (951), Expect = 2e-99, Method: Compositional matrix adjust.
Identities = 239/651 (36%), Positives = 344/651 (52%), Gaps = 75/651 (11%)
Query: 247 YAPHIELLPADKVAV-IVMHKMMGLVMAGHEDRCVQVVQA-------AVHIGMAIEQEI- 297
Y P++ELLP KVA ++H M MAG ++ + ++ A+++ A+E E
Sbjct: 464 YGPYLELLPVKKVAANTILHVMT--RMAGDKNTITEQFESETKLGTLAINLSKALESEWL 521
Query: 298 -------------RIHSFLEKTKNYKRKKIIADTEEVLSKEKELLRKRVNSLIKSKRVME 344
+ HS T N +R+ I A EK + + R KSKR E
Sbjct: 522 ATVAGKGGKSASKKPHS----TANLRRRAIRA-------LEKGIEKSRPG---KSKRKKE 567
Query: 345 AQKLLKNEETKPWGRDTQAKLGSRLVELLIETAYV----QHPVNPADYSPPDVRPAFRHR 400
Q L E W + KLG+ LV L+ETA + +HP + ++PAF HR
Sbjct: 568 IQAALAQVE---WPVSVKVKLGAMLVSKLMETAQLPVTREHPRTKEQVT--QMQPAFMHR 622
Query: 401 FKTILKHPGQKTTKRYGVVECDPLVLEGL-DRSAKHMLIPYVPMLVPPKKWKGYNKGGYL 459
K KR GV +P +++ + +L +PM+VPP W G+ KGGYL
Sbjct: 623 MKYY-------HGKRVGVFMPNPALIQKIKSEPVGSLLAKRMPMVVPPLPWTGWAKGGYL 675
Query: 460 FLPSYVMRTHGSRKQQEA--LKSVTGNCMKKVFEALDTLGSTKWRVNKQVLSVLESIWVS 517
+ ++R K + + + + +++ L L W++++ V +V W S
Sbjct: 676 HYSNPILRLAAGDKSGKDYFMAADEKQDLSTLYKGLTALSKVPWKIHRGVFNVQLEAWNS 735
Query: 518 GGNIAGLVDRNDVLI--PEKPLSEDMTEVQKWKWSVRKAKKINQERHSQRCDTELKLSVA 575
G IA N L PE S D + +W+ R HS+RC +L +A
Sbjct: 736 GEEIANFAPLNPELPVPPEPDSSADPVQRLQWQQKCRDIANSRSGNHSKRCFQNFQLEIA 795
Query: 576 RRMKDEEGFYYPHNLDFRGRAYPMHPHLNHLSSDVCRGVLEFAEGRPLGKSGLRWLKIHL 635
R M +E Y+PHN+DFRGRAYP+ P+LNH+ +D RG+L F EG+ LG+SGLRWLKIH+
Sbjct: 796 RTMLNET-LYFPHNMDFRGRAYPIPPYLNHMGADNVRGLLVFGEGKELGESGLRWLKIHM 854
Query: 636 ANLFSGGVEKLSHDGRLAFVENHLYEIFDSAENPINGSRWWLTAEDPFQCLAACINLSEA 695
A + G +K S + R+ F HL +I+DSA+NP++G RWWL AED +Q LAAC L A
Sbjct: 855 ATV--AGYDKASMEERIEFTMQHLDDIYDSAKNPLSGRRWWLQAEDAWQTLAACFELVAA 912
Query: 696 LKSSSPHSVISHLPIHQDGSCNGLQHYAALGRNTLEAAAVNLVAGEKPADVYSEIAVRVH 755
L S P ISHLP+ QDG+CNGLQHYAALG + AA VNL ++PADVY+ +A V
Sbjct: 913 LDSPDPTKYISHLPVQQDGTCNGLQHYAALGGDKAGAAQVNLEPSDRPADVYTAVAEAVK 972
Query: 756 EIMKRDS-NKDPSKHPQALLAKILIDQVDRKLVKQTVMTSVYGVTFVGAREQIKRRLE-- 812
+ +D+ + +P +A+ L ++ RK VKQ VMT+VYGVTF GAR Q++R+LE
Sbjct: 973 AKIAKDAQDGNP-------VAQKLDGRITRKCVKQPVMTNVYGVTFWGARVQVRRQLEAI 1025
Query: 813 --EKGHITDDRQLFAAACYAAKVTLTALGEIFEAARSIMGWLGDCAKVIAS 861
E H D L + Y + +LG++F A+ I WLG CA +A+
Sbjct: 1026 FTESRH-DDPVNLGLMSHYVTQKIFESLGQMFTGAQKIQDWLGQCADRVAT 1075
Score = 82.0 bits (201), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 37/80 (46%), Positives = 57/80 (71%), Gaps = 2/80 (2%)
Query: 866 VRWTTPLGLPVVQPYCKNERHLIRTSLQVLALQ--REGNLVKIRKQRTAFPPNFVHSLDG 923
V WTTPL LPVVQPY ++ ++ TS+Q ++++ + + V RKQ AFPPNF+HSLD
Sbjct: 1135 VVWTTPLRLPVVQPYRASKSKIVSTSMQDISIRDPQVWDPVSRRKQLQAFPPNFIHSLDA 1194
Query: 924 SHMMMTAVACRDAGLHFAGL 943
+HM+++A+ C + G+ FA +
Sbjct: 1195 THMLLSALKCTENGMTFASI 1214
>gi|452838720|gb|EME40660.1| hypothetical protein DOTSEDRAFT_74265 [Dothistroma septosporum NZE10]
Length = 1467
Score = 370 bits (950), Expect = 2e-99, Method: Compositional matrix adjust.
Identities = 237/683 (34%), Positives = 358/683 (52%), Gaps = 62/683 (9%)
Query: 216 IKGLFLGWFGPLSEAIERE-QKMQRT----------KKQKAAYAPHIELLPADKVAVIVM 264
I L W+ L A+E+E +++++T + + Y P++ELLP KVA +
Sbjct: 414 IGALMWQWYDSLLPALEKELEEVKKTLGESVLGTPGEHDRHTYGPYLELLPLKKVAANTI 473
Query: 265 HKMMGLVMAGH-------EDRCVQVVQAAVHIGMAIEQEIRIHSFLEKTKNYKRKKIIAD 317
M + G +++ + Q V + AIE E + + + +K + +
Sbjct: 474 LYTMAQMARGQRNSGDTWKEQEAALGQITVGLANAIEDECTA----DMSSKQQGRKSVQN 529
Query: 318 TEEVLSKEKELLRK-------RVNSLIKSKRVMEA-QKLLKNEETKPWGRDTQAKLGSRL 369
K+ LR S K R E Q++L E W + KLG+ L
Sbjct: 530 ARNPARLRKQALRSLQVAQKADSASKKKKGRSKETNQQILSQLE---WPVSMKVKLGAML 586
Query: 370 VELLIETAYV----QHPVNPADYSPPDVRPAFRHRFKTILKHPGQKTTKRYGVVECDPLV 425
LIETA + +HP + ++PAF HR K + KR G+V +P +
Sbjct: 587 TSKLIETAQLPVTREHPRTKQKIT--QMQPAFLHRMK-------WQKGKRVGMVTPNPAL 637
Query: 426 LEGLDRSA-KHMLIPYVPMLVPPKKWKGYNKGGYLFLPSYVMRTHGSRKQQEA--LKSVT 482
L + +L +PM+V PK W+G+ GGYL + ++R K + + +
Sbjct: 638 LVKMQSEPLGSLLAKRMPMVVEPKPWQGWKDGGYLHYSNDILRLPAGDKSGKDYFMAADR 697
Query: 483 GNCMKKVFEALDTLGSTKWRVNKQVLSVLESIWVSGGNIAGLVDRNDVL-IPEKPLSEDM 541
+ V++ L L W+VN V V W SG IA + ++ +P +P S D
Sbjct: 698 RKELDTVYKGLTALSKVPWKVNHDVFKVQLEAWNSGDAIANFAPLHPIISLPPEPDSSDA 757
Query: 542 TEVQKWKWSVRKAKKINQERHSQRCDTELKLSVARRMKDEEGFYYPHNLDFRGRAYPMHP 601
+KW V++ + HS+RC +L +AR + +E Y+PHN+DFRGRAYP+ P
Sbjct: 758 VARRKWLSEVKELENKKSGLHSKRCFQNFQLEIARTVLNET-LYFPHNMDFRGRAYPIPP 816
Query: 602 HLNHLSSDVCRGVLEFAEGRPLGKSGLRWLKIHLANLFSGGVEKLSHDGRLAFVENHLYE 661
+LNH+ +D R +L FAEGR LG++GLRWLKIHLA + G +K S R+AF E HL +
Sbjct: 817 YLNHMGADNVRSLLTFAEGRELGENGLRWLKIHLATV--AGHDKASMSERVAFTEEHLDD 874
Query: 662 IFDSAENPINGSRWWLTAEDPFQCLAACINLSEALKSSSPHSVISHLPIHQDGSCNGLQH 721
I+DS NP++G +WWL AED +Q LAAC L++AL S P +S+LP+ QDG+CNGLQH
Sbjct: 875 IYDSVRNPLDGRKWWLEAEDAWQTLAACFELTKALDSLDPTKFVSYLPVQQDGTCNGLQH 934
Query: 722 YAALGRNTLEAAAVNLVAGEKPADVYSEIAVRVHEIMKRDSNKDPSKHPQALLAKILIDQ 781
YAALG + A VNL G++PADVY+ +A V E ++RD+ + +A+ L +
Sbjct: 935 YAALGGDKAGAKQVNLEPGDRPADVYTAVADAVKEEIERDAAAGNA------IAQKLHGR 988
Query: 782 VDRKLVKQTVMTSVYGVTFVGAREQIKRRLEE---KGHITDDRQLFAAACYAAKVTLTAL 838
+ RK VKQ VMT+VYGVTF GAR Q++++LE+ + H D + Y A +L
Sbjct: 989 LTRKCVKQPVMTNVYGVTFYGARAQVRKQLEDLFPEVHAHDTVNFGNMSHYVATKIFKSL 1048
Query: 839 GEIFEAARSIMGWLGDCAKVIAS 861
G +F A++I WLG CA +++
Sbjct: 1049 GTMFTGAQAIQNWLGQCADRVST 1071
Score = 87.8 bits (216), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 41/78 (52%), Positives = 56/78 (71%), Gaps = 2/78 (2%)
Query: 866 VRWTTPLGLPVVQPYCKNERHLIRTSLQVLALQREG--NLVKIRKQRTAFPPNFVHSLDG 923
V WTTPL LPVVQPY K++ ++ TS+Q L+LQ + V RKQ AFPPNF+HSLD
Sbjct: 1152 VVWTTPLRLPVVQPYRKSKSRIVTTSMQNLSLQEPQVWDPVSKRKQLQAFPPNFIHSLDA 1211
Query: 924 SHMMMTAVACRDAGLHFA 941
+HM+++A+ C + G+ FA
Sbjct: 1212 THMLLSALRCSENGMTFA 1229
>gi|195051970|ref|XP_001993208.1| GH13202 [Drosophila grimshawi]
gi|193900267|gb|EDV99133.1| GH13202 [Drosophila grimshawi]
Length = 1379
Score = 370 bits (950), Expect = 2e-99, Method: Compositional matrix adjust.
Identities = 254/771 (32%), Positives = 398/771 (51%), Gaps = 72/771 (9%)
Query: 216 IKGLFLGWFGPLSEAIEREQKMQRTKKQ-----KAAYAPHIELLPADKVAVIVMHKMMGL 270
+K L GW +S AI R+ R + + Y ++++L + A I++ ++ L
Sbjct: 549 LKELEQGWRKQISAAIVRDLNTLRAQVRFKPHGYMNYYTYLKVLDTTQFADILIKELYKL 608
Query: 271 VMAGHEDRCVQVVQAAVHIGMAIEQEIRI-----HSFLEKTKN-YKRKKIIADTEEVLSK 324
G E V Q +G ++Q +I + LEK + Y + D+
Sbjct: 609 A-EGSETFSPTVSQLYKELGQKVQQCYQIEQKKHNGILEKIGDIYSAYCELWDSGRTTDN 667
Query: 325 EKELLRKRVNSLIKSKRVMEAQKLLKNEETKPWGRDTQAKLGSRLVELLIETAYVQHPV- 383
+++ ++ V+ S M+ ++ PW + A +G L +L+ + +
Sbjct: 668 TRQMWQRLVHDERHSGPSMDLPEV-------PWPTNVLAGVGRFLYNILMRDIKIDAHIM 720
Query: 384 --------NPADYSPPDVRPAFRHRFKTILKHPGQKTTKRYGVVECDPLVLEGLDRSAKH 435
A + ++ PAF T+ ++ G+ + V+ P VL L R+++
Sbjct: 721 RQKSKAKTTSATMASHNLLPAF----YTLFRNQGRLVKEE---VKPHP-VLSRLLRASRQ 772
Query: 436 MLIPY----VPMLVPPKKWKGYNKGGYLFLPSYVMRT-HGSRKQQEALKSVTGNCMKKVF 490
+ + VPML PP+ W + GGYL S ++R H + +Q E ++S +
Sbjct: 773 QTLTFDSNLVPMLCPPQPWSTPHNGGYLLNKSELIRLPHQAVQQWERIRSSNPQHLYPAI 832
Query: 491 EALDTLGSTKWRVNKQVLSVLESIWVSGGNIAGLVDRNDVLIPEKPL-------SEDMTE 543
++L+ L S WRVN Q+L V+ ++ +GGN V + +P P SE ++
Sbjct: 833 DSLNQLASVPWRVNTQLLDVIIKVFRNGGNAKLDVPQPPSSLPPLPTLPSSDKDSETVSP 892
Query: 544 VQKWKWSVRKA--KKINQERHSQRCDTELKLSVARRMKDEEGFYYPHNLDFRGRAYPMHP 601
++ K K ++ E +S CD +LS+A+ +D+ F+ PHN+DFRGR YP+ P
Sbjct: 893 AERAKQFRDKLGHRRKQAEMYSLWCDALYRLSLAQHYRDK-VFWLPHNMDFRGRVYPVPP 951
Query: 602 HLNHLSSDVCRGVLEFAEGRPLGKSGLRWLKIHLANLFSGGVEKLSHDGRLAFVENHLYE 661
HLNHL SD+ R +L F + +PLG G WLK+H NL +G ++ S RL + E + +
Sbjct: 952 HLNHLGSDLARSMLIFDQAQPLGVDGFSWLKLHCINL-TGMKKRDSVRERLLYAEEIMPD 1010
Query: 662 IFDSAENPINGSRWWLTAEDPFQCLAACINLSEALKSSSPHSVISHLPIHQDGSCNGLQH 721
I DSA+NP+ G WW +++P+Q L C+ +++ +S P + +S PIHQDGSCNGLQH
Sbjct: 1011 ILDSADNPLTGRMWWAKSDEPWQTLGCCMEIAKVQRSPDPAAYLSRFPIHQDGSCNGLQH 1070
Query: 722 YAALGRNTLEAAAVNLVAGEKPADVYSEIAVRVHEIMKRDSNKDPSKHPQALLAKILIDQ 781
YAALGR+ A +VNL P DVYS +A V K D+ +A+ L
Sbjct: 1071 YAALGRDQAGACSVNLSPSAIPQDVYSAVATMVERTRKTDAQSGLH------VAQALEGF 1124
Query: 782 VDRKLVKQTVMTSVYGVTFVGAREQIKRRLEEKGHITDDRQLFAAACYAAKVTLTALGEI 841
V RK++KQTVMT+VYGVT GAR QI R+L++ D ++ A+ Y T +L E+
Sbjct: 1125 VRRKVIKQTVMTTVYGVTRYGARLQIARQLKDIDDFPKD-WVWPASTYLTTKTFESLREM 1183
Query: 842 FEAARSIMGWLGDCAKVIASE-NQPVRWTTPLGLPVVQPYCKNE-RHLIRTSLQVLALQR 899
F + R I W +CA++IA +Q V W TPLGLPVVQPY + E + ++R S L+
Sbjct: 1184 FTSTREIQDWFTECARLIAGVCSQNVEWITPLGLPVVQPYNRQEAKPVLRNS----GLRV 1239
Query: 900 EGNL-------VKIRKQRTAFPPNFVHSLDGSHMMMTAVACRDAGLHFAGL 943
N+ I KQ+ AFPPNF+HSLD SHMM+T++ C G+ F +
Sbjct: 1240 NANMPMDMYERPNILKQKNAFPPNFIHSLDSSHMMLTSLHCERQGITFVSV 1290
>gi|83376040|gb|ABC17824.1| mitochondrial RNA polymerase [Tigriopus californicus]
Length = 1172
Score = 370 bits (949), Expect = 2e-99, Method: Compositional matrix adjust.
Identities = 216/524 (41%), Positives = 309/524 (58%), Gaps = 42/524 (8%)
Query: 441 VPMLVPPKKWKGYNKGGYLFLPSYVMRTHGSRKQQEALKSV-TGNCMKKVFEALDTLGST 499
+PM+VPP+ W + GGYL + R R +EA+++ + N + +AL+ LGST
Sbjct: 586 LPMVVPPRPWVSDSSGGYLLHEVEMTR----RPVEEAVETPRSPNTLLPTLDALNQLGST 641
Query: 500 KWRVNKQVLSVLESIWVSGGNIAGLVDR-------NDVLIPEKPLSE----DMTEVQKWK 548
W +NK +L + ++ + R D+ P + +S+ DMT Q
Sbjct: 642 PWIINKPILECIVEVFRHPKKYNAYLKRVGIPRHPEDIEPPSEAMSKAKFRDMTRDQYTA 701
Query: 549 WSVRKAKK-----INQERHSQRCDTELKLSVARRMKDEEGFYYPHNLDFRGRAYPMHPHL 603
+ +A++ + E +S CDT +LS+A+ +D Y+PHN+DFRGR YP+ P+L
Sbjct: 702 FQQGQAQRQAYIQLKAESYSLWCDTLYRLSIAQHFQDRV-LYFPHNIDFRGRVYPIPPYL 760
Query: 604 NHLSSDVCRGVLEFAEGRPLGKSGLRWLKIHLANLFSGGVEKLSHDGRLAFVENHLYEIF 663
NH+ D+ R +L FAEG+PLG GL WLK+H NL SG +K S R+ + +++L
Sbjct: 761 NHMGCDLSRSLLVFAEGKPLGPKGLDWLKLHTVNL-SGFKKKSSIRERMQYADDNLSLFL 819
Query: 664 DSAENPINGSRWWLTAEDPFQCLAACINLSEALKSSSPHSVISHLPIHQDGSCNGLQHYA 723
DSA +P G +WWL +E+P+Q L ACI L AL SS P + ISHLPIHQDGSCNGLQHYA
Sbjct: 820 DSASDPFGGKKWWLESEEPWQTLGACIELRNALSSSDPTNYISHLPIHQDGSCNGLQHYA 879
Query: 724 ALGRNTLEAAAVNLVAGEKPADVYSEIAVRVHEIMKRDSNKDP-SKHPQALLAKILIDQV 782
A+GR++L A VNL+ E P DVY EIA I++R ++D + +P A+L L +
Sbjct: 880 AMGRDSLGAKFVNLIPSECPQDVYGEIA----SILERKRSEDAQAGNPIAIL---LNGAI 932
Query: 783 DRKLVKQTVMTSVYGVTFVGAREQIKRRLEE-KGHITDDRQLFAAACYAAKVTLTALGEI 841
RK++KQTVMT+VYGVT GA+ QI ++L++ + I +L A+ Y A T +L E+
Sbjct: 933 QRKVIKQTVMTTVYGVTKYGAKLQIAKQLKDIENPIIPSDKLGEASVYLAHRTFDSLNEM 992
Query: 842 FEAARSIMGWLGDCAKVIASE-NQPVRWTTPLGLPVVQPYCKNERHLIRTSLQVLALQRE 900
FE+++ I W CA +I+++ + V W TPLGL VQ Y K H L + +L R+
Sbjct: 993 FESSQKIQNWFISCADMISTDFFRFVEWETPLGLACVQSYQK-PLHSKNLPLGLRSLARK 1051
Query: 901 GNLVKIRKQRTAFPPNFVHSLDGSHMMMTAV-----ACRDAGLH 939
N KQR FPPNFVHSLD SHMM+TA+ C A +H
Sbjct: 1052 PN---TSKQRNGFPPNFVHSLDSSHMMLTALHMWRRGCTYASVH 1092
>gi|320593395|gb|EFX05804.1| mitochondrial DNA-directed RNA polymerase [Grosmannia clavigera
kw1407]
Length = 1496
Score = 369 bits (948), Expect = 3e-99, Method: Compositional matrix adjust.
Identities = 241/678 (35%), Positives = 363/678 (53%), Gaps = 55/678 (8%)
Query: 203 KMIEKRLAPNLPHIKGLFLGWFGPLSEAIEREQKMQRTKKQKAAYAPHIELLPADKVA-V 261
K +E RLA L + LSEA + + K + Y P ++ ++A V
Sbjct: 406 KDLELRLAQELKKVD---------LSEATKNKNK---EDLDRCLYGPFLQQSATSRLAAV 453
Query: 262 IVMHKMMGLVMAGHEDRCVQVVQAAVHIGMAIEQEIRIHSFLEKTKNYKRK-----KIIA 316
++ + L M G D+ V + I E++I++ + ++ ++ RK
Sbjct: 454 TIVSTLSSLAMQGV-DKGVSIGNVITQIAKVAEEDIKLQAEAKQQASHGRKMSARLAAKQ 512
Query: 317 DTEEVLSKEKELLR-KRVNSLIKSKRVMEAQKLLKNEETKP-----WGRDTQAKLGSRLV 370
++ L K LLR ++ + ++K L+ + E W +AK+G+ L+
Sbjct: 513 AAKQALRKSSVLLRGTKLATAAEAKEDEPVPTLVADREPAAGKEMTWPITIKAKVGAALL 572
Query: 371 ELLIETAYV----QHPVNPADYSPPDVRPAFRHRFKTILKHPGQKTTKRYGVVECDPLVL 426
+L+ETA V +HP S +PAF R + K K+ G++ +P ++
Sbjct: 573 SMLLETAKVTAVKEHPETKTLIS--QQQPAF-SRLNQL------KRGKKVGMLIANPTLV 623
Query: 427 EGLDRSAK-HMLIPYVPMLVPPKKWKGYNKGGYLFLPSYVMRTHGSRKQQE--ALKSVTG 483
E + R + L ++PM+V P W + KGG+L P+ ++R SRK Q+ A ++
Sbjct: 624 ELMKREPRADFLARHLPMVVEPAPWTRFYKGGFLESPAPLVRVKDSRKDQKMYAEAAIQR 683
Query: 484 NCMKKVFEALDTLGSTKWRVNKQVLSVLESIWVSGGNIAGLVDRN-DVLIPEKP-LSEDM 541
M +V LD LG T W+VN+ V +V+ W +G IA + D+ +P +P SED
Sbjct: 684 GDMDQVLRGLDVLGRTAWKVNRPVFAVMLEAWNTGEEIAEIPPLTPDISVPAEPDSSEDP 743
Query: 542 TEVQKWKWSVRKAKKINQERHSQRCDTELKLSVARRMKDEEGFYYPHNLDFRGRAYPMHP 601
+ ++W +V+ A+ HS RC T ++ +AR +D+ FY+PHN+DFRGRAYP+ P
Sbjct: 744 MKRRQWLKAVKAAENQRSGLHSVRCFTNFQMEIARAFRDQT-FYFPHNVDFRGRAYPIPP 802
Query: 602 HLNHLSSDVCRGVLEFAEGRPLGKSGLRWLKIHLANLFSGGVEKLSHDGRLAFVENHLYE 661
+ NH+ +D RG+L FA+G+ LG+SGLRWL++HLAN+F G +K S R AF +L +
Sbjct: 803 YFNHMGADNVRGLLTFAKGKQLGESGLRWLQVHLANVF--GYDKASLSDRAAFAMENLDK 860
Query: 662 IFDSAENPINGSRWWLTAEDPFQCLAACINLSEALKSSSPHSVISHLPIHQDGSCNGLQH 721
I DSA P+ G RWWL AEDP+QCLAAC L AL P + SHLP+HQDG+CNGLQH
Sbjct: 861 IRDSATAPLTGQRWWLEAEDPWQCLAACFELKAALDLEDPTTYESHLPVHQDGTCNGLQH 920
Query: 722 YAALGRNTLEAAAVNLVAGEKPADVYSEIAVRVHEIMKRDSNKDPSKHPQALLAKILIDQ 781
YAALG ++ A VNL ++PADVYS +A V E + D + + AK L
Sbjct: 921 YAALGGDSWGARQVNLEPSDRPADVYSAVADIVKESIAEDLARGDAN------AKALTGL 974
Query: 782 VDRKLVKQTVMTSVYGVTFVGAREQIKRRLEE-KGHITDDRQL--FAAACYAAKVTLTAL 838
+ RK+VKQTVMT+VYGVTF GAR+Q+ ++L+ + D + A Y A AL
Sbjct: 975 IKRKVVKQTVMTNVYGVTFAGARKQVLKQLDALYPTLQADSGIPTMLLASYIATKIFKAL 1034
Query: 839 GEIFEAARSIMGWLGDCA 856
+F A I WLG+
Sbjct: 1035 STMFGGAHDIQSWLGEVG 1052
Score = 85.1 bits (209), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 40/78 (51%), Positives = 52/78 (66%), Gaps = 2/78 (2%)
Query: 868 WTTPLGLPVVQPYCKNERHLIRTSLQ--VLALQREGNLVKIRKQRTAFPPNFVHSLDGSH 925
WTTPL +PVVQPY K I T LQ +L++ + V RKQ AFPPNF+HSLD SH
Sbjct: 1167 WTTPLRMPVVQPYRKAASRTIETCLQDLILSVPSRADPVHKRKQLQAFPPNFIHSLDASH 1226
Query: 926 MMMTAVACRDAGLHFAGL 943
M+++A+ C + GL FA +
Sbjct: 1227 MLLSALECDERGLDFAAV 1244
>gi|149034662|gb|EDL89399.1| polymerase (RNA) mitochondrial (DNA directed) (predicted), isoform
CRA_a [Rattus norvegicus]
Length = 1076
Score = 369 bits (948), Expect = 4e-99, Method: Compositional matrix adjust.
Identities = 214/561 (38%), Positives = 322/561 (57%), Gaps = 32/561 (5%)
Query: 349 LKNEETKPWGRDTQAKLGSRLVELLIETAYVQHPVN-PADYSPPDVRPAFRHRFKTILKH 407
L+ +PW +LG +L ELL++ VQ P + A + + P H +
Sbjct: 528 LETPAQQPWSVPVLLQLGKQLAELLVQA--VQMPRSLAARHGAQNFIPVLYHVYSF---- 581
Query: 408 PGQKTTKRYGVVECDPLVLEGLDRSAKHMLI---PYVPMLVPPKKWKGYNKGGYLFLPSY 464
++ ++ G+++ P L+ +A+ L VPML PP W + G YL +
Sbjct: 582 ---RSYRQVGILKPHPAFTHLLETAAEPTLTFETTEVPMLCPPLPWTSLHSGAYLLSSTK 638
Query: 465 VMR-THGSRKQQEALKSVTGNCMKKVFEALDTLGSTKWRVNKQVLSVLESIWVSGGNIAG 523
+MR T G+ + Q L+ + +AL LG+ WRVN ++L ++ I+ G +
Sbjct: 639 IMRATEGTTQHQRLLERCPPAQLHGALDALTQLGNCAWRVNGRLLDLVLQIFRDKGCMRL 698
Query: 524 LVD--RNDVLIPEK-PLSEDMTEVQK--WKWSVRKAKKINQERHSQRCDTELKLSVARRM 578
V R++ P K L T V K + + + K +E HS R + +LS+A+ +
Sbjct: 699 GVPPPRSEAPRPAKHQLPPGSTPVHKSELRKELARCLKAAREMHSLRSEALYRLSLAQHL 758
Query: 579 KDEEGFYYPHNLDFRGRAYPMHPHLNHLSSDVCRGVLEFAEGRPLGKSGLRWLKIHLANL 638
+D F+ PHN+DFRGR YP PH NHL SD+ R +LEFAEGRPLG GL WLKIHL NL
Sbjct: 759 RDRV-FWLPHNMDFRGRTYPCPPHFNHLGSDLARALLEFAEGRPLGPRGLDWLKIHLINL 817
Query: 639 FSGGVEKLSHDGRLAFVENHLYEIFDSAENPINGSRWWLTAEDPFQCLAACINLSEALKS 698
+G ++ S RLAF + + EI DSA+NP+ G +WW+ A++P+Q LA C+ +++A++S
Sbjct: 818 -TGLRKRDSLRMRLAFADEVMGEILDSADNPLTGQKWWMKADEPWQTLACCMEVAQAVRS 876
Query: 699 SSPHSVISHLPIHQDGSCNGLQHYAALGRNTLEAAAVNLVAGEKPADVYSEIAVRVHEIM 758
P + +SHLP+HQDGSCNGLQHYAALGR+++ AA+VNL + P DVY E+A +V E+
Sbjct: 877 PDPTAYVSHLPVHQDGSCNGLQHYAALGRDSVGAASVNLTPSDLPQDVYREVATQVEELR 936
Query: 759 KRDSNKDPSKHPQALLAKILIDQVDRKLVKQTVMTSVYGVTFVGAREQIKRRLEEKGHIT 818
++D+ + +A+ L V RK+VKQTVMT VYGVT G R QI++RL E ++
Sbjct: 937 QQDAKEGLQ------VAQALEGFVSRKVVKQTVMTVVYGVTRYGGRLQIEKRLRE---LS 987
Query: 819 DDRQLFA--AACYAAKVTLTALGEIFEAARSIMGWLGDCAKVIASENQPVRWTTPLGLPV 876
D Q F A+ Y + +L E+F + R+I WL + A +I+ PV W TPLG+P+
Sbjct: 988 DFPQEFVWEASHYLVRQVFKSLQEMFSSTRAIQRWLTESANLISHAGWPVEWVTPLGIPI 1047
Query: 877 VQPYCKNERHLIRTSLQVLAL 897
+QPY + + ++ LQ +
Sbjct: 1048 IQPYHRESKIQVKGGLQSITF 1068
>gi|83376038|gb|ABC17823.1| mitochondrial RNA polymerase [Tigriopus californicus]
Length = 1176
Score = 369 bits (948), Expect = 4e-99, Method: Compositional matrix adjust.
Identities = 216/524 (41%), Positives = 309/524 (58%), Gaps = 42/524 (8%)
Query: 441 VPMLVPPKKWKGYNKGGYLFLPSYVMRTHGSRKQQEALKSV-TGNCMKKVFEALDTLGST 499
+PM+VPP+ W + GGYL + R R +EA+++ + N + +AL+ LGST
Sbjct: 586 LPMVVPPRPWVSDSSGGYLLHEVEMTR----RPVEEAVETPRSPNTLLPTLDALNQLGST 641
Query: 500 KWRVNKQVLSVLESIWVSGGNIAGLVDR-------NDVLIPEKPLSE----DMTEVQKWK 548
W +NK +L + ++ + R D+ P + +S+ DMT Q
Sbjct: 642 PWIINKPILECIVEVFRHPKKYNAYLKRVGIPRHPEDIEPPSEAMSKAKFRDMTRDQYTA 701
Query: 549 WSVRKAKK-----INQERHSQRCDTELKLSVARRMKDEEGFYYPHNLDFRGRAYPMHPHL 603
+ +A++ + E +S CDT +LS+A+ +D Y+PHN+DFRGR YP+ P+L
Sbjct: 702 FQQGQAQRQAYIQLKAESYSLWCDTLYRLSIAQHFQDRV-LYFPHNIDFRGRVYPIPPYL 760
Query: 604 NHLSSDVCRGVLEFAEGRPLGKSGLRWLKIHLANLFSGGVEKLSHDGRLAFVENHLYEIF 663
NH+ D+ R +L FAEG+PLG GL WLK+H NL SG +K S R+ + +++L
Sbjct: 761 NHMGCDLSRSLLVFAEGKPLGPKGLDWLKLHTVNL-SGFKKKSSIRERMQYADDNLSLFL 819
Query: 664 DSAENPINGSRWWLTAEDPFQCLAACINLSEALKSSSPHSVISHLPIHQDGSCNGLQHYA 723
DSA +P G +WWL +E+P+Q L ACI L AL SS P + ISHLPIHQDGSCNGLQHYA
Sbjct: 820 DSASDPFGGKKWWLESEEPWQTLGACIELRNALSSSDPTNYISHLPIHQDGSCNGLQHYA 879
Query: 724 ALGRNTLEAAAVNLVAGEKPADVYSEIAVRVHEIMKRDSNKDP-SKHPQALLAKILIDQV 782
A+GR++L A VNL+ E P DVY EIA I++R ++D + +P A+L L +
Sbjct: 880 AMGRDSLGAKFVNLIPSECPQDVYGEIA----SILERKRSEDAQAGNPIAIL---LNGAI 932
Query: 783 DRKLVKQTVMTSVYGVTFVGAREQIKRRLEE-KGHITDDRQLFAAACYAAKVTLTALGEI 841
RK++KQTVMT+VYGVT GA+ QI ++L++ + I +L A+ Y A T +L E+
Sbjct: 933 QRKVIKQTVMTTVYGVTKYGAKLQIAKQLKDIENPIIPSDKLGEASVYLAHRTFDSLNEM 992
Query: 842 FEAARSIMGWLGDCAKVIASE-NQPVRWTTPLGLPVVQPYCKNERHLIRTSLQVLALQRE 900
FE+++ I W CA +I+++ + V W TPLGL VQ Y K H L + +L R+
Sbjct: 993 FESSQXIQNWFISCADMISTDFFRFVEWETPLGLACVQSYQK-PLHSKNLPLGLRSLARK 1051
Query: 901 GNLVKIRKQRTAFPPNFVHSLDGSHMMMTAV-----ACRDAGLH 939
N KQR FPPNFVHSLD SHMM+TA+ C A +H
Sbjct: 1052 PN---TSKQRNGFPPNFVHSLDSSHMMLTALHMWRRGCTYASVH 1092
>gi|83376032|gb|ABC17820.1| mitochondrial RNA polymerase [Tigriopus californicus]
Length = 1171
Score = 369 bits (947), Expect = 5e-99, Method: Compositional matrix adjust.
Identities = 218/526 (41%), Positives = 307/526 (58%), Gaps = 46/526 (8%)
Query: 441 VPMLVPPKKWKGYNKGGYLFLPSYVMRTHGSRKQQEALKSV-TGNCMKKVFEALDTLGST 499
+PM+VPP+ W + GGYL + R R +EA+++ + N + +AL+ LGST
Sbjct: 586 LPMVVPPRPWVSDSSGGYLLHEVEMTR----RPVEEAVETPRSPNTLLPTLDALNQLGST 641
Query: 500 KWRVNKQVLSVLESIWVSGGNIAGLVDRNDVLIPEKPLS-------------EDMTEVQK 546
W +NK +L + ++ + R V IP P + DMT Q
Sbjct: 642 PWIINKPILECIVEVFRHPKKYNAYLKR--VGIPRHPENIEPPSEAMSKARFRDMTRDQY 699
Query: 547 WKWSVRKAKK-----INQERHSQRCDTELKLSVARRMKDEEGFYYPHNLDFRGRAYPMHP 601
+ +A++ + E +S CDT +LS+A+ +D Y+PHN+DFRGR YP+ P
Sbjct: 700 TAFQQGQAQRQAYIQLKAESYSLWCDTLYRLSIAQHFQDRV-LYFPHNIDFRGRVYPIPP 758
Query: 602 HLNHLSSDVCRGVLEFAEGRPLGKSGLRWLKIHLANLFSGGVEKLSHDGRLAFVENHLYE 661
+LNH+ D+ R +L FAEG+PLG GL WLK+H NL SG +K S R+ + E++L
Sbjct: 759 YLNHMGCDLSRSLLVFAEGKPLGPKGLDWLKLHTVNL-SGFKKKSSIRERMQYAEDNLSL 817
Query: 662 IFDSAENPINGSRWWLTAEDPFQCLAACINLSEALKSSSPHSVISHLPIHQDGSCNGLQH 721
DSA +P G +WWL +E+P+Q L ACI L AL SS P + ISHLPIHQDGSCNGLQH
Sbjct: 818 FLDSASDPFGGKKWWLESEEPWQTLGACIELRNALSSSDPTNYISHLPIHQDGSCNGLQH 877
Query: 722 YAALGRNTLEAAAVNLVAGEKPADVYSEIAVRVHEIMKRDSNKDP-SKHPQALLAKILID 780
YAA+GR++L A VNL+ E P DVY EIA I++R ++D + +P A+L L
Sbjct: 878 YAAMGRDSLGAKFVNLIPSECPQDVYGEIA----SILERKRSEDAQAGNPIAIL---LNG 930
Query: 781 QVDRKLVKQTVMTSVYGVTFVGAREQIKRRLEE-KGHITDDRQLFAAACYAAKVTLTALG 839
+ RK++KQTVMT+VYGVT GA+ QI ++L++ + I +L A+ Y A T +L
Sbjct: 931 AIQRKVIKQTVMTTVYGVTKYGAKLQIAKQLKDIENPIIPSDKLGEASVYLAHRTFDSLN 990
Query: 840 EIFEAARSIMGWLGDCAKVIASE-NQPVRWTTPLGLPVVQPYCKNERHLIRTSLQVLALQ 898
E+FE+++ I W CA +I+++ + V W TPLGL VQ Y K H L + +L
Sbjct: 991 EMFESSQKIQNWFISCADMISTDFFRFVEWETPLGLACVQSYQK-PLHSKNLPLGLRSLA 1049
Query: 899 REGNLVKIRKQRTAFPPNFVHSLDGSHMMMTAV-----ACRDAGLH 939
R+ N KQR FPPNFVHSLD SHMM+TA+ C A +H
Sbjct: 1050 RKPN---TSKQRNGFPPNFVHSLDSSHMMLTALHMWRRGCTYASVH 1092
>gi|83376026|gb|ABC17817.1| mitochondrial RNA polymerase [Tigriopus californicus]
Length = 1176
Score = 369 bits (947), Expect = 5e-99, Method: Compositional matrix adjust.
Identities = 218/526 (41%), Positives = 307/526 (58%), Gaps = 46/526 (8%)
Query: 441 VPMLVPPKKWKGYNKGGYLFLPSYVMRTHGSRKQQEALKSV-TGNCMKKVFEALDTLGST 499
+PM+VPP+ W + GGYL + R R +EA+++ + N + +AL+ LGST
Sbjct: 586 LPMVVPPRPWVSDSSGGYLLHEVEMTR----RPVEEAVETPRSPNTLLPTLDALNQLGST 641
Query: 500 KWRVNKQVLSVLESIWVSGGNIAGLVDRNDVLIPEKPLS-------------EDMTEVQK 546
W +NK +L + ++ + R V IP P + DMT Q
Sbjct: 642 PWIINKPILECIVEVFRHPKKYNAYLKR--VGIPRHPENIEPPSEAMSKARFRDMTRDQY 699
Query: 547 WKWSVRKAKK-----INQERHSQRCDTELKLSVARRMKDEEGFYYPHNLDFRGRAYPMHP 601
+ +A++ + E +S CDT +LS+A+ +D Y+PHN+DFRGR YP+ P
Sbjct: 700 TAFQQGQAQRQAYIQLKAESYSLWCDTLYRLSIAQHFQDRV-LYFPHNIDFRGRVYPIPP 758
Query: 602 HLNHLSSDVCRGVLEFAEGRPLGKSGLRWLKIHLANLFSGGVEKLSHDGRLAFVENHLYE 661
+LNH+ D+ R +L FAEG+PLG GL WLK+H NL SG +K S R+ + E++L
Sbjct: 759 YLNHMGCDLSRSLLVFAEGKPLGPKGLDWLKLHTVNL-SGFKKKSSIRERMQYAEDNLSL 817
Query: 662 IFDSAENPINGSRWWLTAEDPFQCLAACINLSEALKSSSPHSVISHLPIHQDGSCNGLQH 721
DSA +P G +WWL +E+P+Q L ACI L AL SS P + ISHLPIHQDGSCNGLQH
Sbjct: 818 FLDSASDPFGGKKWWLESEEPWQTLGACIELRNALSSSDPTNYISHLPIHQDGSCNGLQH 877
Query: 722 YAALGRNTLEAAAVNLVAGEKPADVYSEIAVRVHEIMKRDSNKDP-SKHPQALLAKILID 780
YAA+GR++L A VNL+ E P DVY EIA I++R ++D + +P A+L L
Sbjct: 878 YAAMGRDSLGAKFVNLIPSECPQDVYGEIA----SILERKRSEDAQAGNPIAIL---LNG 930
Query: 781 QVDRKLVKQTVMTSVYGVTFVGAREQIKRRLEE-KGHITDDRQLFAAACYAAKVTLTALG 839
+ RK++KQTVMT+VYGVT GA+ QI ++L++ + I +L A+ Y A T +L
Sbjct: 931 AIQRKVIKQTVMTTVYGVTKYGAKLQIAKQLKDIENPIIPSDKLGEASVYLAHRTFDSLN 990
Query: 840 EIFEAARSIMGWLGDCAKVIASE-NQPVRWTTPLGLPVVQPYCKNERHLIRTSLQVLALQ 898
E+FE+++ I W CA +I+++ + V W TPLGL VQ Y K H L + +L
Sbjct: 991 EMFESSQKIQNWFISCADMISTDFFRFVEWETPLGLACVQSYQK-PLHSKNLPLGLRSLA 1049
Query: 899 REGNLVKIRKQRTAFPPNFVHSLDGSHMMMTAV-----ACRDAGLH 939
R+ N KQR FPPNFVHSLD SHMM+TA+ C A +H
Sbjct: 1050 RKPN---TSKQRNGFPPNFVHSLDSSHMMLTALHMWRRGCTYASVH 1092
>gi|83376034|gb|ABC17821.1| mitochondrial RNA polymerase [Tigriopus californicus]
Length = 1176
Score = 369 bits (947), Expect = 5e-99, Method: Compositional matrix adjust.
Identities = 218/526 (41%), Positives = 307/526 (58%), Gaps = 46/526 (8%)
Query: 441 VPMLVPPKKWKGYNKGGYLFLPSYVMRTHGSRKQQEALKSV-TGNCMKKVFEALDTLGST 499
+PM+VPP+ W + GGYL + R R +EA+++ + N + +AL+ LGST
Sbjct: 586 LPMVVPPRPWVSDSSGGYLLHEVEMTR----RPVEEAVETPRSPNTLLPTLDALNQLGST 641
Query: 500 KWRVNKQVLSVLESIWVSGGNIAGLVDRNDVLIPEKPLS-------------EDMTEVQK 546
W +NK +L + ++ + R V IP P + DMT Q
Sbjct: 642 PWIINKPILECIVEVFRHPKKYNAYLKR--VGIPRHPENIEPPSEAMSXARFRDMTRDQY 699
Query: 547 WKWSVRKAKK-----INQERHSQRCDTELKLSVARRMKDEEGFYYPHNLDFRGRAYPMHP 601
+ +A++ + E +S CDT +LS+A+ +D Y+PHN+DFRGR YP+ P
Sbjct: 700 TAFQQGQAQRQAYIQLKAESYSLWCDTLYRLSIAQHFQDRV-LYFPHNIDFRGRVYPIPP 758
Query: 602 HLNHLSSDVCRGVLEFAEGRPLGKSGLRWLKIHLANLFSGGVEKLSHDGRLAFVENHLYE 661
+LNH+ D+ R +L FAEG+PLG GL WLK+H NL SG +K S R+ + E++L
Sbjct: 759 YLNHMGCDLSRSLLVFAEGKPLGPKGLDWLKLHTVNL-SGFKKKSSIRERMQYAEDNLSL 817
Query: 662 IFDSAENPINGSRWWLTAEDPFQCLAACINLSEALKSSSPHSVISHLPIHQDGSCNGLQH 721
DSA +P G +WWL +E+P+Q L ACI L AL SS P + ISHLPIHQDGSCNGLQH
Sbjct: 818 FLDSASDPFGGKKWWLESEEPWQTLGACIELRNALSSSDPTNYISHLPIHQDGSCNGLQH 877
Query: 722 YAALGRNTLEAAAVNLVAGEKPADVYSEIAVRVHEIMKRDSNKDP-SKHPQALLAKILID 780
YAA+GR++L A VNL+ E P DVY EIA I++R ++D + +P A+L L
Sbjct: 878 YAAMGRDSLGAKFVNLIPSECPQDVYGEIA----SILERKRSEDAQAGNPIAIL---LNG 930
Query: 781 QVDRKLVKQTVMTSVYGVTFVGAREQIKRRLEE-KGHITDDRQLFAAACYAAKVTLTALG 839
+ RK++KQTVMT+VYGVT GA+ QI ++L++ + I +L A+ Y A T +L
Sbjct: 931 AIQRKVIKQTVMTTVYGVTKYGAKLQIAKQLKDIENPIIPSDKLSEASVYLAHRTFDSLN 990
Query: 840 EIFEAARSIMGWLGDCAKVIASE-NQPVRWTTPLGLPVVQPYCKNERHLIRTSLQVLALQ 898
E+FE+++ I W CA +I+++ + V W TPLGL VQ Y K H L + +L
Sbjct: 991 EMFESSQKIQNWFISCADMISTDFFRFVEWETPLGLACVQSYQK-PLHSKNLPLGLRSLA 1049
Query: 899 REGNLVKIRKQRTAFPPNFVHSLDGSHMMMTAV-----ACRDAGLH 939
R+ N KQR FPPNFVHSLD SHMM+TA+ C A +H
Sbjct: 1050 RKPN---TSKQRNGFPPNFVHSLDSSHMMLTALHMWRRGCTYASVH 1092
>gi|198414501|ref|XP_002124660.1| PREDICTED: similar to RNA polymerase [Ciona intestinalis]
Length = 1114
Score = 369 bits (946), Expect = 5e-99, Method: Compositional matrix adjust.
Identities = 236/728 (32%), Positives = 368/728 (50%), Gaps = 50/728 (6%)
Query: 231 IEREQKMQRTKKQK-AAYAPHIELLPADKVAVIVMHKMMGLVMAGHEDRCVQVVQAAVHI 289
+ E K R +K + + P + +LP + I++ MM + +G+ A +
Sbjct: 337 VSEEDKWTRYRKHRFSGVYPFLCVLPPETFVDIIIQFMMSMSASGN---------IASVL 387
Query: 290 GMAIEQEIRIHSFLEKTKNYKRKKIIADTEEVLSKEKELLRKRVNSLIKSKRVMEAQKLL 349
+ + H + + K+ + + S + R N L + ++ + +
Sbjct: 388 CYELGSSVYSHHLINQLKH---DGYFENLRMIYSDYTSMYTHRCN-LSPRQSWLQLEDKI 443
Query: 350 KNEETK----PWGRDTQAKLGSRLVELLIETAYVQHPVNPADYSPPDVR--PAFRHRFKT 403
N T+ PW +G +L+E+++ T N S +R PA + +K
Sbjct: 444 GNISTRHRIEPWHNMWLFTVGLKLLEVMVSTL----TFNLDWGSGVKLRNIPAVFNSYKV 499
Query: 404 ILKHPGQKTTKRYGVVECDPLVLEGLDRSAKHML---IPYVPMLVPPKKWKGYNKGGYLF 460
K YG+ P + L AKH +PM+VPP W ++GGYL
Sbjct: 500 W-------GGKMYGMAVPHPGYVAMLS-DAKHDFEFETGILPMVVPPLPWVNPSQGGYLA 551
Query: 461 LPSYVMRTHGSRKQQEALKSVTGNCMKKVFEALDTLGSTKWRVNKQVLSVLESIWVSGGN 520
P+ +R++ QE ++ + + V ++L+ LGS W++N++VL V ++ + G+
Sbjct: 552 SPTKFVRSYRDVIGQEE-DTIDQSDVTTVMDSLNILGSVGWKINQRVLDVQLCLFRNNGD 610
Query: 521 IAGLVDRNDVLIPEKPLSEDMTEVQKWKW-----SVRKAKKINQERHSQRCDTELKLSVA 575
+ P+ P ++ ++ K + R A K+ E +S D KLS+A
Sbjct: 611 KKLSIPPPATSAPKPPDLSNVADLPPNKRGEMFEAARAATKLKLEMNSLHADGLYKLSIA 670
Query: 576 RRMKDEEGFYYPHNLDFRGRAYPMHPHLNHLSSDVCRGVLEFAEGRPLGKSGLRWLKIHL 635
+D+ ++PHNLDFRGR YP+ HLN++ SDV R + FA+G+PLG GL WLKIHL
Sbjct: 671 DYYRDDI-VWFPHNLDFRGRTYPVSRHLNYMGSDVSRSLFLFADGKPLGGDGLNWLKIHL 729
Query: 636 ANLFSGGVEKLSHDGRLAFVENHLYEIFDSAENPINGSRWWLTAEDPFQCLAACINLSEA 695
NL +G +K RL + + EI DSA+ P++G WW +++P+Q LAAC L++A
Sbjct: 730 VNL-TGEKKKEGMAARLDYANEMMDEILDSADRPLDGRCWWKESDEPWQTLAACFVLADA 788
Query: 696 LKSSSPHSVISHLPIHQDGSCNGLQHYAALGRNTLEAAAVNLVAGEKPADVYSEIAVRVH 755
L++ +P + +LP++QDGSCNGLQHYAALGR+TL A VNL P D+Y+ +A +V
Sbjct: 789 LRTRNPEDYVCNLPVYQDGSCNGLQHYAALGRDTLGAQQVNLAPSSVPQDIYAGVAAKVE 848
Query: 756 EIMKRDSNKDPSKHPQALLAKILIDQVDRKLVKQTVMTSVYGVTFVGAREQIKRRLEEKG 815
I D+++ +AK+L V R++VKQTVMT+VYGVT G Q++R+L
Sbjct: 849 NIRSLDADRGSE------VAKVLEGFVTRQVVKQTVMTTVYGVTRYGGVLQVQRQLLYLD 902
Query: 816 HITDDRQLFAAACYAAKVTLTALGEIFEAARSIMGWLGDCAKVIASENQPVRWTTPLGLP 875
L A Y ++ EIF A I W D A+ ++ PV W TPLGL
Sbjct: 903 DFPRQHSL-KGAMYLVDALFQSINEIFTGASHIQKWFTDIARCVSRGGNPVEWETPLGLR 961
Query: 876 VVQPYCKNERHLIRTSLQVLALQREGNLVKIRKQRTAFPPNFVHSLDGSHMMMTAVACRD 935
VVQPY + T LQ + R + KQ AFPPNF+HSLD +HMM+TA+ C
Sbjct: 962 VVQPYHSIMTQTMDTQLQRINFTRATTAPNVMKQTNAFPPNFIHSLDSTHMMLTALYCHK 1021
Query: 936 AGLHFAGL 943
G+ F+ +
Sbjct: 1022 FGIKFSAV 1029
>gi|83376028|gb|ABC17818.1| mitochondrial RNA polymerase [Tigriopus californicus]
Length = 1176
Score = 367 bits (942), Expect = 2e-98, Method: Compositional matrix adjust.
Identities = 218/526 (41%), Positives = 306/526 (58%), Gaps = 46/526 (8%)
Query: 441 VPMLVPPKKWKGYNKGGYLFLPSYVMRTHGSRKQQEALKSV-TGNCMKKVFEALDTLGST 499
+PM+VPP+ W + GGYL + R R +EA+++ + N + +AL+ LGST
Sbjct: 586 LPMVVPPRPWVSDSSGGYLLHEVEMTR----RPVEEAVETPRSPNTLLPTLDALNQLGST 641
Query: 500 KWRVNKQVLSVLESIWVSGGNIAGLVDRNDVLIPEKPLS-------------EDMTEVQK 546
W +NK +L + ++ + R V IP P + DMT Q
Sbjct: 642 PWIINKPILECIVEVFRHPKKYNAYLKR--VGIPRHPENIEPPSEAMSKARFRDMTRDQY 699
Query: 547 WKWSVRKAKK-----INQERHSQRCDTELKLSVARRMKDEEGFYYPHNLDFRGRAYPMHP 601
+ +A++ + E +S CDT +LS+A+ +D Y+PHN+DFRGR YP+ P
Sbjct: 700 KAFQQGQAQRQAYIQLKAESYSLWCDTLYRLSIAQHFQDRV-LYFPHNIDFRGRVYPIPP 758
Query: 602 HLNHLSSDVCRGVLEFAEGRPLGKSGLRWLKIHLANLFSGGVEKLSHDGRLAFVENHLYE 661
+LNH+ D+ R +L FAEG+PLG GL WLK+H NL SG +K S R+ + E++L
Sbjct: 759 YLNHMGCDLSRSLLVFAEGKPLGPKGLDWLKLHTVNL-SGFKKKSSIRERMQYAEDNLSL 817
Query: 662 IFDSAENPINGSRWWLTAEDPFQCLAACINLSEALKSSSPHSVISHLPIHQDGSCNGLQH 721
DSA +P G WWL +E+P+Q L ACI L AL SS P + ISHLPIHQDGSCNGLQH
Sbjct: 818 FLDSASDPFGGKMWWLESEEPWQTLGACIELRNALSSSDPTNYISHLPIHQDGSCNGLQH 877
Query: 722 YAALGRNTLEAAAVNLVAGEKPADVYSEIAVRVHEIMKRDSNKDP-SKHPQALLAKILID 780
YAA+GR++L A VNL+ E P DVY EIA I++R ++D + +P A+L L
Sbjct: 878 YAAMGRDSLGAKFVNLIPSECPQDVYGEIA----SILERKRSEDAQAGNPIAIL---LNG 930
Query: 781 QVDRKLVKQTVMTSVYGVTFVGAREQIKRRLEE-KGHITDDRQLFAAACYAAKVTLTALG 839
+ RK++KQTVMT+VYGVT GA+ QI ++L++ + I +L A+ Y A T +L
Sbjct: 931 AIQRKVIKQTVMTTVYGVTKYGAKLQIAKQLKDIENPIIPSDKLGEASVYLAHRTFDSLN 990
Query: 840 EIFEAARSIMGWLGDCAKVIASE-NQPVRWTTPLGLPVVQPYCKNERHLIRTSLQVLALQ 898
E+FE+++ I W CA +I+++ + V W TPLGL VQ Y K H L + +L
Sbjct: 991 EMFESSQKIQNWFISCADMISTDFFRFVEWETPLGLACVQSYQK-PLHSKNLPLGLRSLA 1049
Query: 899 REGNLVKIRKQRTAFPPNFVHSLDGSHMMMTAV-----ACRDAGLH 939
R+ N KQR FPPNFVHSLD SHMM+TA+ C A +H
Sbjct: 1050 RKPN---TSKQRNGFPPNFVHSLDSSHMMLTALHMWRRGCTYASVH 1092
>gi|195437825|ref|XP_002066840.1| GK24692 [Drosophila willistoni]
gi|194162925|gb|EDW77826.1| GK24692 [Drosophila willistoni]
Length = 1353
Score = 367 bits (942), Expect = 2e-98, Method: Compositional matrix adjust.
Identities = 249/758 (32%), Positives = 394/758 (51%), Gaps = 55/758 (7%)
Query: 216 IKGLFLGWFGPLSEAIEREQKMQRTKKQ-----KAAYAPHIELLPADKVAVIVMHKMMGL 270
+K L W +S AI R+ R + + Y ++++L IV+ ++ L
Sbjct: 532 LKELEQNWRKQISVAIVRDMNTLRAQVRFKPHGYMNYYTYLKVLDTSHYTDIVIKELYKL 591
Query: 271 VMAGHEDRCVQVVQAAVHIGMAIEQEIRIHSFLEKTKNYKRKKIIADTEEVLSKEKELLR 330
G E V Q +G +++ +I E+ K+ + I D + R
Sbjct: 592 A-EGSETFSPTVGQLYKELGQKVQRRYQI----EQKKHNGTLEKIGDIYSSYCDIWDSGR 646
Query: 331 KRVNSLIKSKRVMEAQKLLKNEETK----PWGRDTQAKLGSRLVELLIETAYVQHPVNPA 386
+ N+ +R++ Q+ + PW + +G L +L+ + +
Sbjct: 647 TQDNTRQIWQRLVHDQREIGGPSMDLPEIPWPSNVLTGVGRFLYNILMRDIKIDSHIMRQ 706
Query: 387 D--YSPPDVRPAFRHRFKTILKHPGQKTTKRYGVVECDPLVLEGLDRSAKHMLIPY---- 440
+ S ++ PAF T+ ++ G+ + V+ P VL L R+++ + +
Sbjct: 707 NNRQSTQNLMPAFY----TLFRNQGRLVKEE---VKPHP-VLSRLLRASRQQTLTFDSNL 758
Query: 441 VPMLVPPKKWKGYNKGGYLFLPSYVMRT-HGSRKQQEALKSVTGNCMKKVFEALDTLGST 499
VPML PP+ W + GGYL S ++R H + +Q E + + + ++L+ L S
Sbjct: 759 VPMLCPPQPWSTPHNGGYLLNKSELIRLPHQAVQQWERINATNPEQIYPALDSLNQLASV 818
Query: 500 KWRVNKQVLSVLESIWVSGGNIAGLVDRNDVLIPEKPLSE-----DMTEVQKWKWSVRKA 554
WRVN Q+L V+ ++ +GG+ V + +P P ++ D++ + K K
Sbjct: 819 PWRVNTQLLDVIIEVFQNGGDAKLDVPQPPSALPPLPANQAIDTKDISNADRAKQFRDKL 878
Query: 555 --KKINQERHSQRCDTELKLSVARRMKDEEGFYYPHNLDFRGRAYPMHPHLNHLSSDVCR 612
++ E +S CD +LS+A+ +D+ F+ PHN+DFRGR YP+ PHLNHL SD+ R
Sbjct: 879 GHRRKQAEMYSLWCDALYRLSLAQHYRDK-VFWLPHNMDFRGRVYPVPPHLNHLGSDLAR 937
Query: 613 GVLEFAEGRPLGKSGLRWLKIHLANLFSGGVEKLSHDGRLAFVENHLYEIFDSAENPING 672
+L F + +PLG G WLK+H NL +G ++ S RL + E + EI DSA+NP+ G
Sbjct: 938 SILIFDQAQPLGLDGFSWLKLHCINL-TGMKKRDSVRERLLYAEEIMPEILDSADNPLTG 996
Query: 673 SRWWLTAEDPFQCLAACINLSEALKSSSPHSVISHLPIHQDGSCNGLQHYAALGRNTLEA 732
+ WW +++P+Q LA C+ +++ +S P + +S PIHQDGSCNGLQHYAALGR+ A
Sbjct: 997 NMWWSKSDEPWQTLACCMEIAKVQRSPDPAAYLSRFPIHQDGSCNGLQHYAALGRDQAGA 1056
Query: 733 AAVNLVAGEKPADVYSEIAVRVHEIMKRDSNKDPSKHPQALLAKILIDQVDRKLVKQTVM 792
+VNL P DVYS +A V K D+ +A+ L V RK++KQTVM
Sbjct: 1057 CSVNLAPSPLPQDVYSAVAALVERTRKSDAVNGLH------VAQALEGFVRRKVIKQTVM 1110
Query: 793 TSVYGVTFVGAREQIKRRLEEKGHITDDRQLFAAACYAAKVTLTALGEIFEAARSIMGWL 852
T+VYGVT GAR QI R+L++ D ++ A+ Y T +L E+F + R I W
Sbjct: 1111 TTVYGVTRYGARLQIARQLKDIDEFPKD-WVWPASTYLTTKTFESLREMFTSTREIQDWF 1169
Query: 853 GDCAKVIASE-NQPVRWTTPLGLPVVQPYCKNE-RHLIRTSLQVLA-----LQREGNLVK 905
+CA++I+ Q V W TPLGLPVVQPY + + +H R+ L+V A + N++
Sbjct: 1170 TECARLISGVCGQNVEWITPLGLPVVQPYSRQDVKHTARSGLRVNANMPMDMYERPNIL- 1228
Query: 906 IRKQRTAFPPNFVHSLDGSHMMMTAVACRDAGLHFAGL 943
KQ+ AFPPNF+HSLD SHMM+T++ C G+ F +
Sbjct: 1229 --KQKNAFPPNFIHSLDSSHMMLTSLHCERQGITFVSV 1264
>gi|83376042|gb|ABC17825.1| mitochondrial RNA polymerase [Tigriopus californicus]
Length = 1176
Score = 367 bits (941), Expect = 2e-98, Method: Compositional matrix adjust.
Identities = 216/526 (41%), Positives = 305/526 (57%), Gaps = 46/526 (8%)
Query: 441 VPMLVPPKKWKGYNKGGYLFLPSYVMRTHGSRKQQEALKSV-TGNCMKKVFEALDTLGST 499
+PM+VPP+ W + GGYL + R R +EA+++ + N + +AL+ LGST
Sbjct: 586 LPMVVPPRPWVSDSSGGYLLHEVEMTR----RPDEEAVETPRSPNTLLPTLDALNQLGST 641
Query: 500 KWRVNKQVLSVLESIWVSGGNIAGLVDRNDVLIPEKPLS-------------EDMTEVQK 546
W +NK +L + ++ + R V IP P + DMT Q
Sbjct: 642 PWIINKPILECIVEVFRHPKKYNAYLKR--VGIPRHPENIEPPSEAMSKARFRDMTRDQY 699
Query: 547 WKWSVRKAKK-----INQERHSQRCDTELKLSVARRMKDEEGFYYPHNLDFRGRAYPMHP 601
+ +A++ + E +S CDT +LS+A+ +D Y+PHN+DFRGR YP+ P
Sbjct: 700 TAFQQGQAQRQAYIQLKAESYSLWCDTLYRLSIAQHFQDRV-LYFPHNIDFRGRVYPIPP 758
Query: 602 HLNHLSSDVCRGVLEFAEGRPLGKSGLRWLKIHLANLFSGGVEKLSHDGRLAFVENHLYE 661
+LNH+ D+ R +L FAEG+PLG GL WLK+H NL SG +K S R+ + E++L
Sbjct: 759 YLNHMGCDLSRSLLVFAEGKPLGPKGLDWLKLHTVNL-SGFKKKSSIRERMQYAEDNLSL 817
Query: 662 IFDSAENPINGSRWWLTAEDPFQCLAACINLSEALKSSSPHSVISHLPIHQDGSCNGLQH 721
DSA +P G +WWL +E+P+Q L ACI L AL S P + ISHLPIHQDGSCNGLQH
Sbjct: 818 FLDSASDPFGGKKWWLESEEPWQTLGACIELRNALSSPDPTNYISHLPIHQDGSCNGLQH 877
Query: 722 YAALGRNTLEAAAVNLVAGEKPADVYSEIAVRVHEIMKRDSNKDP-SKHPQALLAKILID 780
YAA+GR++L A VNL+ E P DVY EIA I++R ++D + +P A+L L
Sbjct: 878 YAAMGRDSLGAKFVNLIPSECPQDVYGEIA----SILERKRSEDAQAGNPIAIL---LNG 930
Query: 781 QVDRKLVKQTVMTSVYGVTFVGAREQIKRRLEE-KGHITDDRQLFAAACYAAKVTLTALG 839
+ RK++KQTVMT+VYGVT GA+ QI ++L++ + + +L A+ Y A T +L
Sbjct: 931 AIQRKVIKQTVMTTVYGVTKYGAKLQIAKQLKDIENPLIPSDKLGEASVYLAHRTFDSLN 990
Query: 840 EIFEAARSIMGWLGDCAKVIASE-NQPVRWTTPLGLPVVQPYCKNERHLIRTSLQVLALQ 898
E+FE+++ I W CA +I+++ + V W TPLGL VQ Y K H L + L
Sbjct: 991 EMFESSQKIQNWFISCADMISTDFFRFVEWETPLGLACVQSYQK-PLHSKNLPLGLRTLA 1049
Query: 899 REGNLVKIRKQRTAFPPNFVHSLDGSHMMMTAV-----ACRDAGLH 939
R+ N KQR FPPNFVHSLD SHMM+TA+ C A +H
Sbjct: 1050 RKPN---TSKQRNGFPPNFVHSLDSSHMMLTALHMWRRGCTYASVH 1092
>gi|170029524|ref|XP_001842642.1| DNA-directed RNA polymerase, mitochondrial [Culex quinquefasciatus]
gi|167863226|gb|EDS26609.1| DNA-directed RNA polymerase, mitochondrial [Culex quinquefasciatus]
Length = 1308
Score = 366 bits (940), Expect = 3e-98, Method: Compositional matrix adjust.
Identities = 205/520 (39%), Positives = 302/520 (58%), Gaps = 33/520 (6%)
Query: 438 IPYVPMLVPPKKWKGYNKGGYLFLPSYVMRT-HGSRKQQEALKSVTGNCMKKVFEALDTL 496
I VPML PP+ W GGY+ S ++R + +Q E + + M +AL+ L
Sbjct: 713 INLVPMLCPPQPWSTAVNGGYILAKSDLIRLPQQAHQQSERIAEASPQDMYPTLDALNQL 772
Query: 497 GSTKWRVNKQVLSVLESIWVSGGNIAGLVDRNDVLIPEKPLS----------EDMTEVQK 546
GS W++N +VL V+ +++ GGN + + +PE P S +MT +
Sbjct: 773 GSIPWKINDEVLDVVLAVFNKGGN-------SKLDVPEPPASLAPIEETIPRNEMTGYDR 825
Query: 547 WKWSVRKA--KKINQERHSQRCDTELKLSVARRMKDEEGFYYPHNLDFRGRAYPMHPHLN 604
+ +K ++ + +S CD +LS+A + + F+ P N+DFRGR YP+ PHLN
Sbjct: 826 FNLMRKKMTHRRKQGDMYSLWCDALYRLSLANHFRGKV-FWLPQNIDFRGRVYPIPPHLN 884
Query: 605 HLSSDVCRGVLEFAEGRPLGKSGLRWLKIHLANLFSGGVEKLSHDGRLAFVENHLYEIFD 664
HL D+ R ++ F + +PLG G WLK+H NL +G ++ S RL + + + +I D
Sbjct: 885 HLGHDLARCLMVFHQKKPLGPDGFNWLKLHCINL-TGLKKRDSVQDRLRYADEIMDDILD 943
Query: 665 SAENPINGSRWWLTAEDPFQCLAACINLSEALKSSSPHSVISHLPIHQDGSCNGLQHYAA 724
SA+ P+ G WW +++P+Q LA C+ +++ + +P +S PIHQDGSCNGLQHYAA
Sbjct: 944 SADRPLTGRMWWSHSDEPWQTLACCMEIAKVHRCPNPAKFMSGFPIHQDGSCNGLQHYAA 1003
Query: 725 LGRNTLEAAAVNLVAGEKPADVYSEIAVRVHEIMKRDSNKDPSKHPQALLAKILIDQVDR 784
LGR+T A +VNL + P DVYS +AV V E +D+ + +A IL + R
Sbjct: 1004 LGRDTPGAISVNLAPADVPQDVYSAVAVLVEENRAKDAANN------VKVAAILEGFIKR 1057
Query: 785 KLVKQTVMTSVYGVTFVGAREQIKRRLEEKGHITDDRQLFAAACYAAKVTLTALGEIFEA 844
K++KQTVMT+VYGVT GAR+QI R+LE + ++ A+ Y T AL E+F +
Sbjct: 1058 KVIKQTVMTTVYGVTRYGARKQIARQLEYIDEFPKE-WVWPASSYLTVKTFNALSEMFTS 1116
Query: 845 ARSIMGWLGDCAKVIASE-NQPVRWTTPLGLPVVQPYCKNERHLIRT-SLQVLALQREGN 902
A+ I W DCA++I++ Q V W TPLGLPVVQPY +++R I + S+Q+ +
Sbjct: 1117 AKEIQDWFTDCARLISAVCAQNVEWITPLGLPVVQPYNRSDRPAIPSKSIQIPEHFAMDS 1176
Query: 903 LVK--IRKQRTAFPPNFVHSLDGSHMMMTAVACRDAGLHF 940
K I KQ+ AFPPNFVHSLD SHMM+T++ C AGL F
Sbjct: 1177 YEKPNIMKQKNAFPPNFVHSLDSSHMMLTSLYCERAGLTF 1216
>gi|393906843|gb|EFO18076.2| DNA-dependent RNA polymerase [Loa loa]
Length = 1117
Score = 366 bits (939), Expect = 4e-98, Method: Compositional matrix adjust.
Identities = 229/621 (36%), Positives = 335/621 (53%), Gaps = 55/621 (8%)
Query: 357 WGRDTQAKLGSRLVELLIETAYVQHPVNPADYSPPDVRPAFRHRFKTILKHPGQKTTKRY 416
+G + +LGS L+ +++E + V P F H K ++
Sbjct: 433 FGSGIREQLGSFLMSVVLEACKLH--VEAGSRGNSICIPVFSH--KDVVNEESSLDGDVL 488
Query: 417 GVVECDPLVLEGLDRSAKH----MLIPY--VPMLVPPKKWKGYNKGG-YLFLPSYVMRTH 469
V + + ++ +KH M+ P +PM VPP+ W +GG Y P V+R H
Sbjct: 489 CVTKMIKICNAMMEVVSKHQFEWMVFPTDSLPMEVPPRPWLDSGEGGPYYGSPFNVLRAH 548
Query: 470 G-------SRKQQEALKSVTGNCMKKVFEALDTLGSTKWRVNKQVLSVLESIWVSGGNIA 522
+ + ++ LKS + VF+AL+ LG T W++N VL V ++ A
Sbjct: 549 PDYSTINVNYEMKKRLKSRKQ--ARPVFDALNDLGVTPWKINGPVLDVALRVFEMAQLEA 606
Query: 523 GLVDRNDVLIPEKP--------------LSEDMTEVQKWKWSVRKAK----KINQERHSQ 564
+ IP P + D V +W+ KAK K E +S
Sbjct: 607 DEKFLEKLSIPIHPSRVSIPDYVAKFGNMEVDKLPVNEWR-EYSKAKYEAMKKRNELNSL 665
Query: 565 RCDTELKLSVARRMKDEEGFYYPHNLDFRGRAYPMHPHLNHLSSDVCRGVLEFAEGRPLG 624
C +L++A K E ++PH++DFRGR YP+ P+LNH+ D+ R +L FAEGRPLG
Sbjct: 666 WCWLLYRLTMANHFK-ESVLFFPHSMDFRGRVYPITPYLNHMGDDLNRSLLVFAEGRPLG 724
Query: 625 KSGLRWLKIHLANLFSGGVEKLSHDGRLAFVENHLYEIFDSAENPINGSRWWLTAEDPFQ 684
GLRWLK+H NL +G ++K S+ R + + L ++ +SA +P++G WW +E+P+Q
Sbjct: 725 DDGLRWLKLHCINL-TGILKKESNFTRAIYADEMLPKMLESANSPLSGEMWWTKSEEPWQ 783
Query: 685 CLAACINLSEALKSSSPHSVISHLPIHQDGSCNGLQHYAALGRNTLEAAAVNLVAGEKPA 744
L+AC+ + AL++ P + ISHLP++QDGSCNGLQHYAALGR+ VNLV EKP+
Sbjct: 784 TLSACMEIRNALQTGDPVTFISHLPVYQDGSCNGLQHYAALGRDQEGGMEVNLVPAEKPS 843
Query: 745 DVYSEIAVRVHEI-MKRDSNKDPSKHPQAL-LAKILIDQVDRKLVKQTVMTSVYGVTFVG 802
DVYS +AVRV + ++ + + D H AL L I+ D V RK++KQTVMT+VYGVT G
Sbjct: 844 DVYSSVAVRVEQKRLEDEKSPDSEAHDLALSLRTIMPDPVSRKVIKQTVMTTVYGVTMNG 903
Query: 803 AREQIKRRLEEKGHITDDRQLFAAACYAAKVTLTALGEIFEAARSIMGWLGDCAKVIASE 862
AR QI+R+L+ G +++R +A Y A T +L + F ++ + W DCA+ I
Sbjct: 904 ARRQIERQLKAIGIDSNERMKYAT--YLADRTFRSLNDAFTSSMKMKDWFRDCAEAIVKL 961
Query: 863 NQPVRWTTPLGLPVVQPYCKNERHLIRTSLQVLALQREGNLVKIRKQRTAFPPNFVHSLD 922
V W TPLGLPV QPY + ++ + L K KQ AFPPNFVHSLD
Sbjct: 962 MHTVEWITPLGLPVYQPYLET----------IMEENKVYRLPKSIKQVNAFPPNFVHSLD 1011
Query: 923 GSHMMMTAVACRDAGLHFAGL 943
+HMM+TA+ CR G+ FA +
Sbjct: 1012 STHMMLTALYCRRLGITFAAV 1032
>gi|312088786|ref|XP_003145994.1| DNA-dependent RNA polymerase [Loa loa]
Length = 1131
Score = 366 bits (939), Expect = 4e-98, Method: Compositional matrix adjust.
Identities = 211/530 (39%), Positives = 303/530 (57%), Gaps = 43/530 (8%)
Query: 441 VPMLVPPKKWKGYNKGG-YLFLPSYVMRTHG-------SRKQQEALKSVTGNCMKKVFEA 492
+PM VPP+ W +GG Y P V+R H + + ++ LKS + VF+A
Sbjct: 533 LPMEVPPRPWLDSGEGGPYYGSPFNVLRAHPDYSTINVNYEMKKRLKSRKQ--ARPVFDA 590
Query: 493 LDTLGSTKWRVNKQVLSVLESIWVSGGNIAGLVDRNDVLIPEKP--------------LS 538
L+ LG T W++N VL V ++ A + IP P +
Sbjct: 591 LNDLGVTPWKINGPVLDVALRVFEMAQLEADEKFLEKLSIPIHPSRVSIPDYVAKFGNME 650
Query: 539 EDMTEVQKWKWSVR---KAKKINQERHSQRCDTELKLSVARRMKDEEGFYYPHNLDFRGR 595
D V +W+ + +A K E +S C +L++A K E ++PH++DFRGR
Sbjct: 651 VDKLPVNEWREYSKAKYEAMKKRNELNSLWCWLLYRLTMANHFK-ESVLFFPHSMDFRGR 709
Query: 596 AYPMHPHLNHLSSDVCRGVLEFAEGRPLGKSGLRWLKIHLANLFSGGVEKLSHDGRLAFV 655
YP+ P+LNH+ D+ R +L FAEGRPLG GLRWLK+H NL +G ++K S+ R +
Sbjct: 710 VYPITPYLNHMGDDLNRSLLVFAEGRPLGDDGLRWLKLHCINL-TGILKKESNFTRAIYA 768
Query: 656 ENHLYEIFDSAENPINGSRWWLTAEDPFQCLAACINLSEALKSSSPHSVISHLPIHQDGS 715
+ L ++ +SA +P++G WW +E+P+Q L+AC+ + AL++ P + ISHLP++QDGS
Sbjct: 769 DEMLPKMLESANSPLSGEMWWTKSEEPWQTLSACMEIRNALQTGDPVTFISHLPVYQDGS 828
Query: 716 CNGLQHYAALGRNTLEAAAVNLVAGEKPADVYSEIAVRVHEI-MKRDSNKDPSKHPQAL- 773
CNGLQHYAALGR+ VNLV EKP+DVYS +AVRV + ++ + + D H AL
Sbjct: 829 CNGLQHYAALGRDQEGGMEVNLVPAEKPSDVYSSVAVRVEQKRLEDEKSPDSEAHDLALS 888
Query: 774 LAKILIDQVDRKLVKQTVMTSVYGVTFVGAREQIKRRLEEKGHITDDRQLFAAACYAAKV 833
L I+ D V RK++KQTVMT+VYGVT GAR QI+R+L+ G +++R +A Y A
Sbjct: 889 LRTIMPDPVSRKVIKQTVMTTVYGVTMNGARRQIERQLKAIGIDSNERMKYAT--YLADR 946
Query: 834 TLTALGEIFEAARSIMGWLGDCAKVIASENQPVRWTTPLGLPVVQPYCKNERHLIRTSLQ 893
T +L + F ++ + W DCA+ I V W TPLGLPV QPY +
Sbjct: 947 TFRSLNDAFTSSMKMKDWFRDCAEAIVKLMHTVEWITPLGLPVYQPYLET---------- 996
Query: 894 VLALQREGNLVKIRKQRTAFPPNFVHSLDGSHMMMTAVACRDAGLHFAGL 943
++ + L K KQ AFPPNFVHSLD +HMM+TA+ CR G+ FA +
Sbjct: 997 IMEENKVYRLPKSIKQVNAFPPNFVHSLDSTHMMLTALYCRRLGITFAAV 1046
>gi|83376030|gb|ABC17819.1| mitochondrial RNA polymerase [Tigriopus californicus]
Length = 1176
Score = 365 bits (938), Expect = 4e-98, Method: Compositional matrix adjust.
Identities = 217/526 (41%), Positives = 306/526 (58%), Gaps = 46/526 (8%)
Query: 441 VPMLVPPKKWKGYNKGGYLFLPSYVMRTHGSRKQQEALKSV-TGNCMKKVFEALDTLGST 499
+PM+VPP+ W + GGYL + R R +EA+++ + N + +AL+ LGST
Sbjct: 586 LPMVVPPRPWVSDSSGGYLLHEVEMTR----RPVEEAVETPRSPNTLLPTLDALNQLGST 641
Query: 500 KWRVNKQVLSVLESIWVSGGNIAGLVDRNDVLIPEKPLS-------------EDMTEVQK 546
W +NK +L + ++ + R V IP P + DMT Q
Sbjct: 642 PWIINKPILECIVEVFRHPKKYNAYLKR--VGIPRHPENIEPPSEAMSKARFRDMTRDQY 699
Query: 547 WKWSVRKAKK-----INQERHSQRCDTELKLSVARRMKDEEGFYYPHNLDFRGRAYPMHP 601
+ +A++ + E +S CDT +LS+A+ +D Y+PHN+DFRGR YP+ P
Sbjct: 700 TAFQQGQAQRQAYIQLKAESYSLWCDTLYRLSIAQHFQDRV-LYFPHNIDFRGRVYPIPP 758
Query: 602 HLNHLSSDVCRGVLEFAEGRPLGKSGLRWLKIHLANLFSGGVEKLSHDGRLAFVENHLYE 661
+LNH+ D+ R +L FAEG+PLG GL WLK+H NL SG +K S R+ + E++L
Sbjct: 759 YLNHMGCDLSRSLLVFAEGKPLGPKGLDWLKLHTVNL-SGFKKKSSIRERMQYAEDNLSL 817
Query: 662 IFDSAENPINGSRWWLTAEDPFQCLAACINLSEALKSSSPHSVISHLPIHQDGSCNGLQH 721
DSA +P G +WWL +E+P+Q L ACI L AL SS P + IS LPIHQDGSCNGLQH
Sbjct: 818 FLDSASDPFGGKKWWLESEEPWQTLGACIELRNALSSSDPTNYISXLPIHQDGSCNGLQH 877
Query: 722 YAALGRNTLEAAAVNLVAGEKPADVYSEIAVRVHEIMKRDSNKDP-SKHPQALLAKILID 780
YAA+GR++L A VNL+ E P DVY EIA I++R ++D + +P A+L L
Sbjct: 878 YAAMGRDSLGAKFVNLIPSECPLDVYGEIA----SILERKRSEDAQAGNPIAIL---LNG 930
Query: 781 QVDRKLVKQTVMTSVYGVTFVGAREQIKRRLEE-KGHITDDRQLFAAACYAAKVTLTALG 839
+ RK++KQTVMT+VYGVT GA+ QI ++L++ + I +L A+ Y A T +L
Sbjct: 931 AIQRKVIKQTVMTTVYGVTKYGAKLQIAKQLKDIENPIIPSDKLGEASVYLAHRTFDSLN 990
Query: 840 EIFEAARSIMGWLGDCAKVIASE-NQPVRWTTPLGLPVVQPYCKNERHLIRTSLQVLALQ 898
E+FE+++ I W CA +I+++ + V W TPLGL VQ Y K H L + +L
Sbjct: 991 EMFESSQKIQNWFISCADMISTDFFRFVEWETPLGLACVQSYQK-PLHSKNLPLGLRSLA 1049
Query: 899 REGNLVKIRKQRTAFPPNFVHSLDGSHMMMTAV-----ACRDAGLH 939
R+ N KQR FPPNFVHSLD SHMM+TA+ C A +H
Sbjct: 1050 RKPN---TSKQRNGFPPNFVHSLDSSHMMLTALHMWRRGCTYASVH 1092
>gi|402076916|gb|EJT72265.1| hypothetical protein GGTG_09131 [Gaeumannomyces graminis var. tritici
R3-111a-1]
Length = 1501
Score = 365 bits (938), Expect = 4e-98, Method: Compositional matrix adjust.
Identities = 228/661 (34%), Positives = 345/661 (52%), Gaps = 87/661 (13%)
Query: 357 WGRDTQAKLGSRLVELLIETAYV----QHPVNPADYSPPDVRPAFRHRFKTILKHPGQKT 412
W + ++G+ L++ +I+TA + +HP + S + +PAF H + K
Sbjct: 605 WPVGIKYQVGAALLQAIIQTATITVVKEHPETGSLVS--ESQPAFVHNQQ-------YKR 655
Query: 413 TKRYGVVECDPLVLEGLDRSAK-HMLIPYVPMLVPPKKWKGYNKGGYLFLPSYVMRTHGS 471
K+ GV+ + ++E L R + L ++PM+ P+ W +++GG++ P+ ++R
Sbjct: 656 GKKVGVLVVNKTLVEMLKREPRADFLARHLPMVCEPEPWTRFDRGGFIESPAQMVRVKPG 715
Query: 472 RKQQE--ALKSVTGNCMKKVFEALDTLGSTKWRVNKQVLSVLESIWVSGGNIAGLVDRN- 528
+ Q+ A ++ M+++ + LD+LG T W++NK V V+ +W SG +A + +
Sbjct: 716 ERDQKIYAEAAIENGHMEQIMKGLDSLGKTAWKINKNVFGVMLDVWNSGEALANIPPLDP 775
Query: 529 DVLIPEKPL-SEDMTEVQKWKWSVRKAKKINQERHSQRCDTELKLSVARRMKDEEGFYYP 587
+ +PE+P+ +ED +KW +V+ A+ + H RC +L +AR ++D+ Y+P
Sbjct: 776 KIPVPEEPVATEDPVARRKWLNAVKMAENLKSSLHGVRCFMNFQLEIARAVRDQT-IYFP 834
Query: 588 HNLDFRGRAYPMHPHLNHLSSDVCRGVLEFAEGRPLGKSGLRWLKIHLANLFSGGVEKLS 647
HN+DFRGRAYP+ + NH+ +D RG++ FA+G+ LG+ G RWLK+HLAN+F G +K S
Sbjct: 835 HNVDFRGRAYPLPTYFNHMGADHVRGLMLFAKGKELGEEGFRWLKVHLANVF--GFDKAS 892
Query: 648 HDGRLAFVENHLYEIFDSAENPINGSRWWLTAEDPFQCLAACINLSEALKSSSPHSVISH 707
R F +L I DSA NP+ G RWWL EDP+QCLA C L A +S ISH
Sbjct: 893 LREREKFAMENLENIMDSATNPLTGRRWWLKGEDPWQCLATCYELKAAFESPDATKFISH 952
Query: 708 LPIHQDGSCNGLQHYAALGRNTLEAAAVNLVAGEKPADVYSEIAVRVHEIMKRDSNKD-- 765
LP+HQDG+CNGLQHYAALG + A VNL GE+PADVYS +A V E + RD+
Sbjct: 953 LPVHQDGTCNGLQHYAALGGDEWGARQVNLEPGERPADVYSAVADLVSEDLARDAEAGNF 1012
Query: 766 -----------------------------PSKHPQALLAKILIDQVDRKLVKQTVMTSVY 796
K Q L + D ++ V+ V++S
Sbjct: 1013 MAKALNGKIKRKVVKQTVMTNVYGVTFAGAKKQVQKQLDALYPDLAEQAGVEPVVLSSYI 1072
Query: 797 GV--------TFVGAREQIKRRLEEKGH-----ITDDRQLFAAACYAAKVTLTALGEI-F 842
+ F GA E I+ L E G IT ++ AA + + +T G
Sbjct: 1073 AMKIFSALSQMFSGAHE-IQTWLGEIGGRVCRAITPEQLKQLAAQFPEEQLMTGDGRSKT 1131
Query: 843 EAARSIMGWLGDCA------------------KVIASENQPVRWTTPLGLPVVQPYCKNE 884
+AA+ + GD A +++ + WTTPL +PVVQPY
Sbjct: 1132 KAAKGVKTAKGDKAAKGDATAKGKKKKAPTTDDLLSHFRSTIVWTTPLRMPVVQPYRHTG 1191
Query: 885 RHLIRTSLQVLALQ--REGNLVKIRKQRTAFPPNFVHSLDGSHMMMTAVACRDAGLHFAG 942
LI T LQ LAL+ + V RKQ AFPPNF+HSLD SHMM++A+ C + GL FA
Sbjct: 1192 VRLISTCLQTLALKTPEASDPVNRRKQLQAFPPNFIHSLDASHMMLSALECGEMGLTFAA 1251
Query: 943 L 943
+
Sbjct: 1252 V 1252
>gi|83376044|gb|ABC17826.1| mitochondrial RNA polymerase [Tigriopus californicus]
Length = 1176
Score = 365 bits (938), Expect = 5e-98, Method: Compositional matrix adjust.
Identities = 216/526 (41%), Positives = 305/526 (57%), Gaps = 46/526 (8%)
Query: 441 VPMLVPPKKWKGYNKGGYLFLPSYVMRTHGSRKQQEALKSV-TGNCMKKVFEALDTLGST 499
+PM+VPP+ W + GGYL + R R +EA+++ + N + +AL+ LGST
Sbjct: 586 LPMVVPPRPWVSDSSGGYLLHEVEMTR----RPVEEAVETPRSPNTLLPTLDALNQLGST 641
Query: 500 KWRVNKQVLSVLESIWVSGGNIAGLVDRNDVLIPEKPLS-------------EDMTEVQK 546
W +NK +L + ++ + R V IP P + DMT Q
Sbjct: 642 PWIINKPILECIVEVFRHPKKYNAYLKR--VGIPRHPENIEPPSEAMSKARFRDMTRDQY 699
Query: 547 WKWSVRKAKK-----INQERHSQRCDTELKLSVARRMKDEEGFYYPHNLDFRGRAYPMHP 601
+ +A++ + E +S CDT +LS+A+ +D Y+PHN+DFRGR YP+ P
Sbjct: 700 TAFQQGQAQRQAYIQLKAESYSLWCDTLYRLSIAQHFQDRV-LYFPHNIDFRGRVYPIPP 758
Query: 602 HLNHLSSDVCRGVLEFAEGRPLGKSGLRWLKIHLANLFSGGVEKLSHDGRLAFVENHLYE 661
+LNH+ D+ R +L FAEG+PLG GL WLK+H NL SG +K S R+ + E++L
Sbjct: 759 YLNHMGCDLSRSLLVFAEGKPLGPKGLDWLKLHTVNL-SGFKKKSSIRERMQYAEDNLSL 817
Query: 662 IFDSAENPINGSRWWLTAEDPFQCLAACINLSEALKSSSPHSVISHLPIHQDGSCNGLQH 721
DSA +P G +WWL +E+P+Q L ACI L AL S P + ISHLPIHQDGSCNGLQH
Sbjct: 818 FLDSASDPFGGKKWWLESEEPWQTLGACIELRNALSSPDPTNYISHLPIHQDGSCNGLQH 877
Query: 722 YAALGRNTLEAAAVNLVAGEKPADVYSEIAVRVHEIMKRDSNKDP-SKHPQALLAKILID 780
YAA+GR++L A VNL+ E P DVY EIA I++R ++D + +P A+L L
Sbjct: 878 YAAMGRDSLGAKFVNLIPSECPQDVYGEIA----SILERKRSEDAQAGNPIAIL---LNG 930
Query: 781 QVDRKLVKQTVMTSVYGVTFVGAREQIKRRLEE-KGHITDDRQLFAAACYAAKVTLTALG 839
+ RK++KQTVMT+VYGVT GA+ QI ++L++ + + +L A+ Y A T +L
Sbjct: 931 AIQRKVIKQTVMTTVYGVTKYGAKLQIAKQLKDIENPLIPSDKLGEASVYLAHRTFDSLN 990
Query: 840 EIFEAARSIMGWLGDCAKVIASE-NQPVRWTTPLGLPVVQPYCKNERHLIRTSLQVLALQ 898
E+FE+++ I W CA +I+++ + V W TPLGL VQ Y K H L + L
Sbjct: 991 EMFESSQKIQNWFISCADMISTDFFRFVEWETPLGLACVQSYQK-PLHSKNLPLGLRTLA 1049
Query: 899 REGNLVKIRKQRTAFPPNFVHSLDGSHMMMTAV-----ACRDAGLH 939
R+ N KQR FPPNFVHSLD SHMM+TA+ C A +H
Sbjct: 1050 RKPN---TSKQRNGFPPNFVHSLDSSHMMLTALHMWRRGCTYASVH 1092
>gi|194759172|ref|XP_001961823.1| GF14737 [Drosophila ananassae]
gi|190615520|gb|EDV31044.1| GF14737 [Drosophila ananassae]
Length = 1362
Score = 365 bits (937), Expect = 6e-98, Method: Compositional matrix adjust.
Identities = 253/771 (32%), Positives = 392/771 (50%), Gaps = 90/771 (11%)
Query: 223 WFGPLSEAIEREQKMQRTKKQ-----KAAYAPHIELLPADKVAVIVMHKMMGLVMAGHED 277
W +S AI R+ R + + Y +++ + I++ ++ L AG E
Sbjct: 543 WRKQISAAIVRDLNTLRVQVRFKPHGYMNYYTYLKTMDTSHFVDILIKELYKLA-AGSET 601
Query: 278 RCVQVVQAAVHIGMAIEQEIRIHSFLEKTKNYKRKKI---------IADTEEVLSKEKEL 328
V Q +G ++Q +I +K +N +KI I D+ + ++
Sbjct: 602 FSPTVGQLYKELGQKVQQRYQIE---QKKQNGTLEKIGEIYSSYCDIWDSGKTQDNTRQA 658
Query: 329 LRKRVNSLIKSKRVMEAQKLLKNEETKPWGRDTQAKLGSRLVELLIETAYVQ-HPVNPAD 387
++ V+ S M+ ++ PW + +G L +L+ + H +
Sbjct: 659 WQRLVHEQRTSGPSMDQPEV-------PWPSNVLTGVGRFLYNILMRDIKIDSHLMRTKS 711
Query: 388 YS-----PPDVRPAFRHRFKTILKHPGQKTTKRYGVVECDPLVLEGLDRSAKHMLIPY-- 440
S P ++ PAF T+ ++ G+ + V+ P VL L R+++ + +
Sbjct: 712 KSKTASQPQNLLPAFY----TLFRNQGRLVKEE---VKPHP-VLARLLRASRQQTLTFDS 763
Query: 441 --VPMLVPPKKWKGYNKGGYLFLPSYVMRT-HGSRKQQEALKSVTGNCMKKVFEALDTLG 497
VPML PP+ W + GGYL S ++R H + +Q E +++ + ++L+ L
Sbjct: 764 NLVPMLCPPQPWSTPHNGGYLLNKSELIRLPHQAVQQWERIRASNPQQLYPALDSLNQLA 823
Query: 498 STKWRVNKQVLSVLESIWVSGGNIAGLVDRNDVLIPEKPLSEDMTEVQKWK----WSVRK 553
S WRVN Q+L V+ ++ +GG+ + +P+ P S K +V
Sbjct: 824 SVPWRVNTQLLDVIIKVFQNGGDAK-------LDVPQPPSSLPPLSSLPPKNAEGSNVSN 876
Query: 554 AKKINQ------------ERHSQRCDTELKLSVARRMKDEEGFYYPHNLDFRGRAYPMHP 601
A + Q E +S CD +LS+A+ +D+ F+ PHN+DFRGR YP+ P
Sbjct: 877 ADRAKQFRDKLVHRRRQAEMYSLWCDALYRLSLAQHFRDK-VFWLPHNMDFRGRVYPVPP 935
Query: 602 HLNHLSSDVCRGVLEFAEGRPLGKSGLRWLKIHLANLFSGGVEKLSHDGRLAFVENHLYE 661
HLNHL SD+ R +L F + +PLG G WLK+H NL +G ++ S RL + E + +
Sbjct: 936 HLNHLGSDLARSMLIFDQAQPLGVDGFSWLKLHCINL-TGLKKRDSVRERLLYAEEIMPD 994
Query: 662 IFDSAENPINGSRWWLTAEDPFQCLAACINLSEALKSSSPHSVISHLPIHQDGSCNGLQH 721
I DSA+NP+ G WW +++P+Q LA C+ ++ +S P + +S PIHQDGSCNGLQH
Sbjct: 995 ILDSADNPLTGRMWWAKSDEPWQTLACCMEIANVHRSPDPAAYLSRFPIHQDGSCNGLQH 1054
Query: 722 YAALGRNTLEAAAVNLVAGEKPADVYSEIAVRVHEIMKRDSNKDPSKHPQALLAKILIDQ 781
YAALGR+ A +VNL P DVYS +A V + K D+ +A+ L
Sbjct: 1055 YAALGRDQAGACSVNLAPSAIPQDVYSAVAALVEKSRKADAQNGLH------VAEALAGF 1108
Query: 782 VDRKLVKQTVMTSVYGVTFVGAREQIKRRLEEKGHITDDRQLFAAACYAAKVTLTALGEI 841
V RK++KQTVMT+VYGVT GAR QI R+L++ D ++ A+ Y T +L E+
Sbjct: 1109 VRRKVIKQTVMTTVYGVTRYGARLQIARQLKDIDEFPKD-WVWPASTYLTTKTFESLREM 1167
Query: 842 FEAARSIMGWLGDCAKVIASE-NQPVRWTTPLGLPVVQPYCKNE-RHLIRTSLQVLALQR 899
F + R I W +CA++I+ +Q V W TPLGLPVVQPY + + +H RT L+V A
Sbjct: 1168 FTSTREIQDWFTECARLISGVCSQNVEWVTPLGLPVVQPYNRQDVKHTARTGLKVTA--- 1224
Query: 900 EGNLV-------KIRKQRTAFPPNFVHSLDGSHMMMTAVACRDAGLHFAGL 943
NL I KQ+ AFPPNF+HSLD SHMM+T++ C G+ F +
Sbjct: 1225 --NLSMDMYERPNILKQKNAFPPNFIHSLDSSHMMLTSLHCERHGITFVSV 1273
>gi|119581581|gb|EAW61177.1| polymerase (RNA) mitochondrial (DNA directed), isoform CRA_a [Homo
sapiens]
Length = 1021
Score = 365 bits (937), Expect = 6e-98, Method: Compositional matrix adjust.
Identities = 221/644 (34%), Positives = 347/644 (53%), Gaps = 42/644 (6%)
Query: 249 PHIELLPADKVAVIVMHKMMGLVMAGHEDRCVQVVQAAVHIGMAIEQEIRIHSFLEKTKN 308
P + LL +V +++ + L G + +A + Q R+ ++ +N
Sbjct: 361 PFLCLLDEREVVRMLLQVLQALPAQGESFTTLARELSARTFSRHVVQRQRVSGQVQALQN 420
Query: 309 YKRKKIIADTEEVLSKEKELLRKRVNSLIKSKRVMEAQKLLKNEETKPWGRDTQAKLGSR 368
+ RK + + E L R+ L + + E +PW Q +LG
Sbjct: 421 HYRKYLCLLASDAEVPEPCLPRQYWEELGAPEALRE----------QPWPLPVQMELGKL 470
Query: 369 LVELLIETAYVQHPVNPADYSPPDVRPAFRHRFKTILKHPGQ-KTTKRYGVVECDPLVLE 427
L E+L++ + ++ +P R +L H + ++ G+++ P ++
Sbjct: 471 LAEMLVQATQMPCSLD---------KPHRSSRLVPVLYHVYSFRNVQQIGILKPHPAYVQ 521
Query: 428 GLDRSAKHMLI---PYVPMLVPPKKWKGYNKGGYLFLPSYVMRT-HGSRKQQEALKSVTG 483
L+++A+ L VPML PP W + G +L P+ +MRT G+ + QE L++
Sbjct: 522 LLEKAAEPTLTFEAVDVPMLCPPLPWTSPHSGAFLLSPTKLMRTVEGATQHQELLETCPP 581
Query: 484 NCMKKVFEALDTLGSTKWRVNKQVLSVLESIWVSGGNIAGLVDRNDVLIPEKP---LSED 540
+ +AL LG+ WRVN +VL ++ ++ + G V P+ P L
Sbjct: 582 TALHGALDALTQLGNCAWRVNGRVLDLVLQLFQAKGCPQLGVPAPPSEAPQPPEAHLPHS 641
Query: 541 MTEVQK--WKWSVRKAKKINQERHSQRCDTELKLSVARRMKDEEGFYYPHNLDFRGRAYP 598
+K + + +K+ +E HS R + +LS+A+ ++D F+ PHN+DFRGR YP
Sbjct: 642 AAPARKAELRRELAHCQKVAREMHSLRAEALYRLSLAQHLRDRV-FWLPHNMDFRGRTYP 700
Query: 599 MHPHLNHLSSDVCRGVLEFAEGRPLGKSGLRWLKIHLANLFSGGVEKLSHDGRLAFVENH 658
PH NHL SDV R +LEFA+GRPLG GL WLKIHL NL +G ++ RLAF E
Sbjct: 701 CPPHFNHLGSDVARALLEFAQGRPLGPHGLDWLKIHLVNL-TGLKKREPLRKRLAFAEEV 759
Query: 659 LYEIFDSAENPINGSRWWLTAEDPFQCLAACINLSEALKSSSPHSVISHLPIHQDGSCNG 718
+ +I DSA+ P+ G +WW+ AE+P+Q LA C+ ++ A+++S P + +SHLP+HQDGSCNG
Sbjct: 760 MDDILDSADQPLTGRKWWMGAEEPWQTLACCMEVANAVRASDPAAYVSHLPVHQDGSCNG 819
Query: 719 LQHYAALGRNTLEAAAVNLVAGEKPADVYSEIAVRVHEIMKRDSNKDPSKHPQALLAKIL 778
LQHYAALGR+++ AA+VNL + P DVYS +A +V ++D+ + +A++L
Sbjct: 820 LQHYAALGRDSVGAASVNLEPSDVPQDVYSGVAAQVEVFRRQDAQRG------MRVAQVL 873
Query: 779 IDQVDRKLVKQTVMTSVYGVTFVGAREQIKRRLEEKGHITDDRQLFA--AACYAAKVTLT 836
+ RK+VKQTVMT VYGVT G R QI++RL E ++D Q F A+ Y +
Sbjct: 874 EGFITRKVVKQTVMTVVYGVTRYGGRLQIEKRLRE---LSDFPQEFVWEASHYLVRQVFK 930
Query: 837 ALGEIFEAARSIMGWLGDCAKVIASENQPVRWTTPLGLPVVQPY 880
+L E+F R+I WL + A++I+ V W TPLG+PV+QPY
Sbjct: 931 SLQEMFSGTRAIQHWLTESARLISHMGSVVEWVTPLGVPVIQPY 974
>gi|83376022|gb|ABC17815.1| mitochondrial RNA polymerase [Tigriopus californicus]
Length = 1176
Score = 365 bits (937), Expect = 6e-98, Method: Compositional matrix adjust.
Identities = 216/526 (41%), Positives = 305/526 (57%), Gaps = 46/526 (8%)
Query: 441 VPMLVPPKKWKGYNKGGYLFLPSYVMRTHGSRKQQEALKSV-TGNCMKKVFEALDTLGST 499
+PM+VPP+ W + GGYL + R R +EA+++ + N + +AL+ LGST
Sbjct: 586 LPMVVPPRPWVSDSSGGYLLHEVEMTR----RPVEEAVETPRSPNTLLPTLDALNQLGST 641
Query: 500 KWRVNKQVLSVLESIWVSGGNIAGLVDRNDVLIPEKPLS-------------EDMTEVQK 546
W +NK +L + ++ + R V IP P + DMT Q
Sbjct: 642 PWIINKPILECIVEVFRHPKKYNAYLKR--VGIPRHPENIEPPSEAMSKARFRDMTRDQY 699
Query: 547 WKWSVRKAKK-----INQERHSQRCDTELKLSVARRMKDEEGFYYPHNLDFRGRAYPMHP 601
+ +A++ + E +S CDT +LS+A+ +D Y+PHN+DFRGR YP+ P
Sbjct: 700 TAFQQGQAQRQAFIQLKAESYSLWCDTLYRLSIAQHFQDRV-LYFPHNIDFRGRVYPIPP 758
Query: 602 HLNHLSSDVCRGVLEFAEGRPLGKSGLRWLKIHLANLFSGGVEKLSHDGRLAFVENHLYE 661
+LNH+ D+ R +L FAEG+PLG GL WLK+H NL SG +K S R+ + E++L
Sbjct: 759 YLNHMGCDLSRSLLVFAEGKPLGPKGLDWLKLHTVNL-SGFKKKSSIRERMQYAEDNLSL 817
Query: 662 IFDSAENPINGSRWWLTAEDPFQCLAACINLSEALKSSSPHSVISHLPIHQDGSCNGLQH 721
DSA +P G +WWL +E+P+Q L ACI L AL S P + ISHLPIHQDGSCNGLQH
Sbjct: 818 FLDSASDPFGGKKWWLESEEPWQTLGACIELRNALSSPDPTNYISHLPIHQDGSCNGLQH 877
Query: 722 YAALGRNTLEAAAVNLVAGEKPADVYSEIAVRVHEIMKRDSNKDP-SKHPQALLAKILID 780
YAA+GR++L A VNL+ E P DVY EIA I++R ++D + +P A+L L
Sbjct: 878 YAAMGRDSLGAKFVNLIPSECPQDVYGEIA----SILERKRSEDAQAGNPIAIL---LNG 930
Query: 781 QVDRKLVKQTVMTSVYGVTFVGAREQIKRRLEE-KGHITDDRQLFAAACYAAKVTLTALG 839
+ RK++KQTVMT+VYGVT GA+ QI ++L++ + + +L A+ Y A T +L
Sbjct: 931 AIQRKVIKQTVMTTVYGVTKYGAKLQIAKQLKDIENPLIPSDKLGEASVYLAHRTFDSLN 990
Query: 840 EIFEAARSIMGWLGDCAKVIASE-NQPVRWTTPLGLPVVQPYCKNERHLIRTSLQVLALQ 898
E+FE+++ I W CA +I+++ + V W TPLGL VQ Y K H L + L
Sbjct: 991 EMFESSQKIQNWFISCADMISTDFFRFVEWETPLGLACVQSYQK-PLHSKNLPLGLRTLA 1049
Query: 899 REGNLVKIRKQRTAFPPNFVHSLDGSHMMMTAV-----ACRDAGLH 939
R+ N KQR FPPNFVHSLD SHMM+TA+ C A +H
Sbjct: 1050 RKPN---TSKQRNGFPPNFVHSLDSSHMMLTALHMWRRGCTYASVH 1092
>gi|83376036|gb|ABC17822.1| mitochondrial RNA polymerase [Tigriopus californicus]
Length = 1176
Score = 365 bits (936), Expect = 9e-98, Method: Compositional matrix adjust.
Identities = 216/526 (41%), Positives = 304/526 (57%), Gaps = 46/526 (8%)
Query: 441 VPMLVPPKKWKGYNKGGYLFLPSYVMRTHGSRKQQEALKSV-TGNCMKKVFEALDTLGST 499
+PM+VPP+ W + GGYL + R R +EA+++ + N + +AL+ LGST
Sbjct: 586 LPMVVPPRPWVSDSSGGYLLHEVEMTR----RPVEEAVETPRSPNTLLPTLDALNQLGST 641
Query: 500 KWRVNKQVLSVLESIWVSGGNIAGLVDRNDVLIPEKPLS-------------EDMTEVQK 546
W +NK +L + ++ + R V IP P + DMT Q
Sbjct: 642 PWIINKPILECIVEVFRHPKKYNAYLKR--VGIPRHPENIEPPSEAMSKARFRDMTRDQY 699
Query: 547 WKWSVRKAKK-----INQERHSQRCDTELKLSVARRMKDEEGFYYPHNLDFRGRAYPMHP 601
+ +A++ + E +S CDT +LS+A+ +D Y+PHN+DFRGR YP+ P
Sbjct: 700 TAFQQGQAQRQAYIQLKAESYSLWCDTLYRLSIAQHFQDRV-LYFPHNIDFRGRVYPIPP 758
Query: 602 HLNHLSSDVCRGVLEFAEGRPLGKSGLRWLKIHLANLFSGGVEKLSHDGRLAFVENHLYE 661
+LNH+ D+ R +L FAEG+PLG GL WLK+H NL SG +K S R+ + E++L
Sbjct: 759 YLNHMGCDLSRSLLVFAEGKPLGPKGLDWLKLHTVNL-SGFKKKSSIRERMQYAEDNLSL 817
Query: 662 IFDSAENPINGSRWWLTAEDPFQCLAACINLSEALKSSSPHSVISHLPIHQDGSCNGLQH 721
DSA +P G +WWL +E+P+Q L ACI L AL S P + ISHLPIHQDGSCNGLQH
Sbjct: 818 FLDSASDPFGGKKWWLESEEPWQTLGACIELRNALSSPDPTNXISHLPIHQDGSCNGLQH 877
Query: 722 YAALGRNTLEAAAVNLVAGEKPADVYSEIAVRVHEIMKRDSNKDP-SKHPQALLAKILID 780
YAA+GR++L A VNL+ E P DVY EIA I++R ++D + +P A+L L
Sbjct: 878 YAAMGRDSLGAKFVNLIPSECPQDVYGEIA----SILERKRSEDAQAGNPIAIL---LNG 930
Query: 781 QVDRKLVKQTVMTSVYGVTFVGAREQIKRRLEE-KGHITDDRQLFAAACYAAKVTLTALG 839
+ RK++KQTVMT+VYGVT GA+ QI ++L++ + + +L A+ Y A T +L
Sbjct: 931 AIQRKVIKQTVMTTVYGVTKYGAKLQIAKQLKDIENPLIPSDKLGEASVYLAHRTFDSLN 990
Query: 840 EIFEAARSIMGWLGDCAKVIASE-NQPVRWTTPLGLPVVQPYCKNERHLIRTSLQVLALQ 898
E+FE++ I W CA +I+++ + V W TPLGL VQ Y K H L + L
Sbjct: 991 EMFESSXKIQNWFISCADMISTDFFRFVEWETPLGLACVQSYQK-PLHSKNLPLGLRTLA 1049
Query: 899 REGNLVKIRKQRTAFPPNFVHSLDGSHMMMTAV-----ACRDAGLH 939
R+ N KQR FPPNFVHSLD SHMM+TA+ C A +H
Sbjct: 1050 RKPN---TSKQRNGFPPNFVHSLDSSHMMLTALHMWRRGCTYASVH 1092
>gi|195470409|ref|XP_002087499.1| GE15788 [Drosophila yakuba]
gi|194173600|gb|EDW87211.1| GE15788 [Drosophila yakuba]
Length = 1366
Score = 363 bits (933), Expect = 2e-97, Method: Compositional matrix adjust.
Identities = 248/735 (33%), Positives = 378/735 (51%), Gaps = 71/735 (9%)
Query: 247 YAPHIELLPADKVAVIVMHKMMGLVMAGHEDRCVQVVQAAVHIGMAIEQEIRIHSFLEKT 306
Y +++ L A A I++ ++ L G E V Q +G ++Q +I +K
Sbjct: 576 YYTYLKTLDASHFADILIKELYKLA-EGSETFSPTVGQLYKELGQKVQQRYQIE---QKK 631
Query: 307 KNYKRKKIIADTEEVLSKEKELLRKRVNSLIKSKRVMEAQKLLKNEETK----------P 356
N +K+ E+ S EL +S + +A + L +E+ + P
Sbjct: 632 HNGTLEKV----GEIYSSYCELW----DSGMSQDNSRQAWQRLVHEQRESGPSMDLPEVP 683
Query: 357 WGRDTQAKLGSRLVELLIETAYV------QHPVNPADYSPPDVRPAFRHRFKTILKHPGQ 410
W + +G L +L+ + Q A P ++ PAF T+ ++ G
Sbjct: 684 WPSNVLTGVGRFLYNILMRDIKIDAHIMRQKSKAKAATQPQNLLPAFY----TLFRNQG- 738
Query: 411 KTTKRYGVVECDPL-VLEGLDRSAKHMLIPY----VPMLVPPKKWKGYNKGGYLFLPSYV 465
R+ E P VL L R+++ + + VPML PP+ W + GGYL S +
Sbjct: 739 ----RFVKEEVKPHPVLSRLFRASRQQTLTFDSNLVPMLCPPQPWSTPHNGGYLLNKSEL 794
Query: 466 MRT-HGSRKQQEALKSVTGNCMKKVFEALDTLGSTKWRVNKQVLSVLESIWVSGGNIAGL 524
+R H + +Q + + + + ++L+ L S WRVN Q+L V+ ++ +GG+
Sbjct: 795 IRLPHQAIQQWDRITASNPQHLYPALDSLNQLASVPWRVNTQLLDVIIGVFQNGGDAKLD 854
Query: 525 VDRNDVLIPEKPLSEDMTEVQKWKWSVRKAKKINQ---------ERHSQRCDTELKLSVA 575
V + +P P+ S +AK+ E +S CD +LS+A
Sbjct: 855 VPQPPSSLPPLPMLPAKDAEGNATSSADRAKEFRDKLGHRRKQAEMYSLWCDALYRLSLA 914
Query: 576 RRMKDEEGFYYPHNLDFRGRAYPMHPHLNHLSSDVCRGVLEFAEGRPLGKSGLRWLKIHL 635
+ +D+ F+ PHN+DFRGR YP+ PHLNHL SD+ R +L F + +PLG G WLK+H
Sbjct: 915 QHYRDKV-FWLPHNMDFRGRVYPVPPHLNHLGSDLARSMLIFDQAQPLGVDGFSWLKLHC 973
Query: 636 ANLFSGGVEKLSHDGRLAFVENHLYEIFDSAENPINGSRWWLTAEDPFQCLAACINLSEA 695
NL +G ++ S RL + E + +I DSA+NP+ G WW +++P+Q LA C+ ++
Sbjct: 974 INL-TGLKKRDSVRERLLYAEEIMPDILDSADNPLTGRMWWAKSDEPWQTLACCMEIANV 1032
Query: 696 LKSSSPHSVISHLPIHQDGSCNGLQHYAALGRNTLEAAAVNLVAGEKPADVYSEIAVRVH 755
+S P + +S PIHQDGSCNGLQHYAALGR+ A +VNL P DVYS +A V
Sbjct: 1033 HRSPDPAAYLSRFPIHQDGSCNGLQHYAALGRDEAGARSVNLAPSAIPQDVYSAVAALVE 1092
Query: 756 EIMKRDSNKDPSKHPQALLAKILIDQVDRKLVKQTVMTSVYGVTFVGAREQIKRRLEEKG 815
+ K D+ +A L V RK++KQTVMT+VYGVT GAR QI R+L++
Sbjct: 1093 KSRKTDAQNGLH------VADALAGFVRRKVIKQTVMTTVYGVTRYGARLQIARQLKDID 1146
Query: 816 HITDDRQLFAAACYAAKVTLTALGEIFEAARSIMGWLGDCAKVIASE-NQPVRWTTPLGL 874
D ++ A+ Y T +L E+F + R I W +CA++I+ +Q V W TPLGL
Sbjct: 1147 DFPKD-WVWPASTYLTTKTFESLREMFTSTREIQDWFTECARLISGVCSQNVEWVTPLGL 1205
Query: 875 PVVQPYCKNE-RHLIRTSLQVLA-----LQREGNLVKIRKQRTAFPPNFVHSLDGSHMMM 928
PVVQPY + E +H RT +V A + N++ KQ+ AFPPNF+HSLD SHMM+
Sbjct: 1206 PVVQPYNRQEMKHSPRTGFKVSANMPMDMYERPNIL---KQKNAFPPNFIHSLDSSHMML 1262
Query: 929 TAVACRDAGLHFAGL 943
T++ C G+ F +
Sbjct: 1263 TSLHCERQGITFVSV 1277
>gi|324503368|gb|ADY41467.1| DNA-directed RNA polymerase [Ascaris suum]
Length = 827
Score = 363 bits (932), Expect = 2e-97, Method: Compositional matrix adjust.
Identities = 233/615 (37%), Positives = 343/615 (55%), Gaps = 51/615 (8%)
Query: 364 KLGSRLVELLIETAYVQHPVNPADY--SPPDVRP-AFRHRFKTILKHPGQKTTKRYGVVE 420
+LGS L+ + +E+ P+ P D+ S D R AF R I + + + +
Sbjct: 144 QLGSFLLNVAMESC--TFPLPPKDHPSSMKDRRAQAFSIRNVVIEEENLMMEEDKMNLCK 201
Query: 421 CDPLVLEGLDRSAKH----MLIPY--VPMLVPPKKWKGYNKGGYLFL-PSYVMRTHGSRK 473
L LD +H +L P +PM +PP+ W Y GG L+ PS V R
Sbjct: 202 MVALNARMLDLFDEHQFEWLLFPSDNLPMKIPPRPWIDYGDGGPLYTKPSDVFRNLPDYP 261
Query: 474 Q----QEALKSVTGNCMKK-VFEALDTLGSTKWRVNKQVLSVLESIW-----VSGGNIA- 522
+ E + + G + VF+AL+ LG+T WR+N +L +L ++ +S G++
Sbjct: 262 RMIISDEVRRRIRGRSQARPVFDALNDLGATPWRINSAMLDILIEVFKMTPDLSKGDMLH 321
Query: 523 --GLVDRNDVL-IPE------KPLSEDMTEVQKWK-WSVRK--AKKINQERHSQRCDTEL 570
+ R+D + IP+ + + D KW+ +S K A K E +S
Sbjct: 322 RLAIPLRSDTIKIPDFVATFGEKVRVDEIPSDKWREYSKNKYEAVKKRNELNSLWYWLMY 381
Query: 571 KLSVARRMKDEEGFYYPHNLDFRGRAYPMHPHLNHLSSDVCRGVLEFAEGRPLGKSGLRW 630
+L +A +++ ++ HN+DFRGR YP+ P+L+H+ D+ R +L FAEG+ LG G RW
Sbjct: 382 RLVMAEHFRNDV-LFFAHNMDFRGRVYPISPYLSHMGDDISRSLLRFAEGKQLGDDGFRW 440
Query: 631 LKIHLANLFSGGVEKLSHDGRLAFVENHLYEIFDSAENPINGSRWWLTAEDPFQCLAACI 690
LK+H NL +G +++ S + RLAF + L +I DSA NP+NG +WW+ +++P+Q LAACI
Sbjct: 441 LKLHCINL-TGHLKRESIENRLAFFDKILPKILDSANNPLNGDQWWMRSDEPWQTLAACI 499
Query: 691 NLSEALKSSSPHSVISHLPIHQDGSCNGLQHYAALGRNTLEAAAVNLVAGEKPADVYSEI 750
+ +AL+S P + +SHLPIHQDGSCNGLQHYAALGR+ + VNL+ + PADVYS +
Sbjct: 500 EIRDALRSGDPSTFVSHLPIHQDGSCNGLQHYAALGRDRQGGSEVNLLPSKLPADVYSSV 559
Query: 751 AVRVHEI-MKRDSNKDPSKHPQAL-LAKILIDQVDRKLVKQTVMTSVYGVTFVGAREQIK 808
A RV + ++ + + DP A+ L L V RK++KQTVMT+VYGVT GA +QIK
Sbjct: 560 AKRVEDKRLEDEKSGDPDVKELAIALRAALPSPVPRKVIKQTVMTTVYGVTMYGATQQIK 619
Query: 809 RRLEEKGHITDDRQLFAAACYAAKVTLTALGEIFEAARSIMGWLGDCAKVIASENQPVRW 868
R+L K + QL A Y A+ T +L + F ++ + W CAK I PV W
Sbjct: 620 RQL--KALEIESDQLGKFASYLAQKTFASLHDAFTSSMQLKDWFRQCAKAIVHLMHPVEW 677
Query: 869 TTPLGLPVVQPYCKNERHLIRTSLQVLALQREGNLVKIRKQRTAFPPNFVHSLDGSHMMM 928
TPLGLPV+QPY K ++ + L + + KQ AFPPNFVHSLD +HMM+
Sbjct: 678 ETPLGLPVMQPYLKLKKKHNKLCLLPVMM----------KQVNAFPPNFVHSLDSTHMML 727
Query: 929 TAVACRDAGLHFAGL 943
T + CR G+ FA +
Sbjct: 728 TTLHCRRLGITFAAV 742
>gi|20129143|ref|NP_608565.1| mitochondrial RNA polymerase, isoform A [Drosophila melanogaster]
gi|442625108|ref|NP_001259853.1| mitochondrial RNA polymerase, isoform B [Drosophila melanogaster]
gi|7296127|gb|AAF51421.1| mitochondrial RNA polymerase, isoform A [Drosophila melanogaster]
gi|40882523|gb|AAR96173.1| LD36213p [Drosophila melanogaster]
gi|440213109|gb|AGB92390.1| mitochondrial RNA polymerase, isoform B [Drosophila melanogaster]
Length = 1369
Score = 363 bits (931), Expect = 3e-97, Method: Compositional matrix adjust.
Identities = 225/619 (36%), Positives = 338/619 (54%), Gaps = 55/619 (8%)
Query: 356 PWGRDTQAKLGSRLVELLIETAYV------QHPVNPADYSPPDVRPAFRHRFKTILKHPG 409
PW + +G L +L+ + Q + A P ++ PAF T+ ++ G
Sbjct: 686 PWPSNVLTGVGRFLYNILMRDIKIDAHIMRQKSKSKAAAQPQNLLPAFY----TLFRNQG 741
Query: 410 QKTTKRYGVVECDPL-VLEGLDRSAKHMLIPY----VPMLVPPKKWKGYNKGGYLFLPSY 464
R+ E P VL L R+++ + + VPML PP+ W + GGYL +
Sbjct: 742 -----RFVKEEVKPHPVLSRLFRASRQQTLTFDSNLVPMLCPPQPWSTPHNGGYLLNKTE 796
Query: 465 VMRT-HGSRKQQEALKSVTGNCMKKVFEALDTLGSTKWRVNKQVLSVLESIWVSGGNIAG 523
++R H + +Q + + + + ++L+ L S WRVN Q+L V+ ++ +GG++
Sbjct: 797 LIRLPHQAIQQWDRIMASNPQHLYPALDSLNQLASVPWRVNTQLLDVIIKVFQNGGDVKL 856
Query: 524 LVDRNDVLIPEKPL------------SEDMTEVQKWKWSVRKAKKINQERHSQRCDTELK 571
V + +P P SED + + K R+ + E +S CD +
Sbjct: 857 DVPQPPSSLPPLPTLPAKDAEGNATSSEDRAKQFRDKLGHRRKQA---EMYSLWCDALYR 913
Query: 572 LSVARRMKDEEGFYYPHNLDFRGRAYPMHPHLNHLSSDVCRGVLEFAEGRPLGKSGLRWL 631
LS+A+ +D+ F+ PHN+DFRGR YP+ PHLNHL SD+ R +L F + +PLG GL WL
Sbjct: 914 LSLAQHYRDK-VFWLPHNMDFRGRVYPVPPHLNHLGSDLARSMLIFDQAQPLGVDGLSWL 972
Query: 632 KIHLANLFSGGVEKLSHDGRLAFVENHLYEIFDSAENPINGSRWWLTAEDPFQCLAACIN 691
K+H NL +G ++ S RL + E + +I DSA+NP+ G WW +++P+Q LA C+
Sbjct: 973 KLHCINL-TGLKKRDSVRERLLYAEEIMPDILDSADNPLTGRMWWSKSDEPWQTLACCME 1031
Query: 692 LSEALKSSSPHSVISHLPIHQDGSCNGLQHYAALGRNTLEAAAVNLVAGEKPADVYSEIA 751
++ + P + +S PIHQDGSCNGLQHYAALGR+ A +VNL P DVYS +A
Sbjct: 1032 IANVHRCPDPAAYLSRFPIHQDGSCNGLQHYAALGRDEAGARSVNLAPSAIPQDVYSAVA 1091
Query: 752 VRVHEIMKRDSNKDPSKHPQALLAKILIDQVDRKLVKQTVMTSVYGVTFVGAREQIKRRL 811
V + K D+ +A+ L V RK++KQTVMT+VYGVT GAR QI R+L
Sbjct: 1092 ALVEKSRKADAQNGLH------VAEALAGFVRRKVIKQTVMTTVYGVTRYGARLQIARQL 1145
Query: 812 EEKGHITDDRQLFAAACYAAKVTLTALGEIFEAARSIMGWLGDCAKVIASE-NQPVRWTT 870
++ D ++ A+ Y T +L E+F + R I W +CA++I+ +Q V W T
Sbjct: 1146 KDIDDFPKD-WVWPASTYLTTKTFESLREMFTSTREIQDWFTECARLISGVCSQNVEWVT 1204
Query: 871 PLGLPVVQPYCKNE-RHLIRTSLQVLA-----LQREGNLVKIRKQRTAFPPNFVHSLDGS 924
PLGLPVVQPY + E +H R+ +V A L N++ KQ+ AFPPNF+HSLD S
Sbjct: 1205 PLGLPVVQPYNRQEMKHSPRSGFKVSANMPMDLYERPNIL---KQKNAFPPNFIHSLDSS 1261
Query: 925 HMMMTAVACRDAGLHFAGL 943
HMM+T++ C G+ F +
Sbjct: 1262 HMMLTSLHCERQGITFVSV 1280
>gi|195388547|ref|XP_002052941.1| GJ17831 [Drosophila virilis]
gi|194149398|gb|EDW65096.1| GJ17831 [Drosophila virilis]
Length = 1374
Score = 363 bits (931), Expect = 4e-97, Method: Compositional matrix adjust.
Identities = 225/617 (36%), Positives = 336/617 (54%), Gaps = 49/617 (7%)
Query: 356 PWGRDTQAKLGSRLVELLIETAYVQHPV--------NPADYSPPDVRPAFRHRFKTILKH 407
PW + A +G L +L+ + + A +P ++ PAF T+ ++
Sbjct: 689 PWPTNVLAGVGRFLYNILMRDIKIDAHIMRQKSKTKTTATTTPQNLLPAF----YTLFRN 744
Query: 408 PGQKTTKRYGVVECDPLVLEGLDRSAKHMLIPY----VPMLVPPKKWKGYNKGGYLFLPS 463
G+ + V+ P VL L R+++ + + VPML PP+ W GGYL S
Sbjct: 745 QGRLVKEE---VKPHP-VLSRLLRASRQQTLTFDSNLVPMLCPPQPWSTPQNGGYLLNKS 800
Query: 464 YVMRT-HGSRKQQEALKSVTGNCMKKVFEALDTLGSTKWRVNKQVLSVLESIWVSGGNIA 522
++R H + +Q E +++ + ++L+ L S WRVN Q+L V+ ++ GG+
Sbjct: 801 ELIRLPHQAVQQWERIRAANPQHLYPALDSLNQLASVPWRVNTQLLDVIIEVFQKGGDAK 860
Query: 523 GLVDRNDVLIPEKPL----SEDMTEVQKWKWSVRKAKKINQER-----HSQRCDTELKLS 573
V + +P P +D + V + + K+ R +S CD +LS
Sbjct: 861 LDVPQPPSSLPPLPTLPTGEKDGSSVSPAERAKLFRDKLGHRRRQAEMYSLWCDALYRLS 920
Query: 574 VARRMKDEEGFYYPHNLDFRGRAYPMHPHLNHLSSDVCRGVLEFAEGRPLGKSGLRWLKI 633
+A+ +D+ F+ PHN+DFRGR YP+ PHLNHL SD+ R +L F + +PLG G WLK+
Sbjct: 921 LAQHYRDK-VFWLPHNMDFRGRVYPVPPHLNHLGSDLARSMLIFDQAQPLGVDGFSWLKL 979
Query: 634 HLANLFSGGVEKLSHDGRLAFVENHLYEIFDSAENPINGSRWWLTAEDPFQCLAACINLS 693
H NL +G ++ S RL + E + EI DSA+NP+ G WW +++P+Q LA C+ ++
Sbjct: 980 HCINL-TGTKKRDSVRERLLYAEEIMPEILDSADNPLTGRMWWAKSDEPWQTLACCMEIA 1038
Query: 694 EALKSSSPHSVISHLPIHQDGSCNGLQHYAALGRNTLEAAAVNLVAGEKPADVYSEIAVR 753
+ +S P + +S PIHQDGSCNGLQHYAALGR+ A +VNL P DVYS +A
Sbjct: 1039 KVQRSPDPAAYLSRFPIHQDGSCNGLQHYAALGRDEAGACSVNLAPSAIPQDVYSAVAAL 1098
Query: 754 VHEIMKRDSNKDPSKHPQALLAKILIDQVDRKLVKQTVMTSVYGVTFVGAREQIKRRLEE 813
V K D+ +A+ L V RK++KQTVMT+VYGVT GAR QI R+L++
Sbjct: 1099 VERSRKTDAQNGLH------VAQALEGFVRRKVIKQTVMTTVYGVTRYGARLQIARQLKD 1152
Query: 814 KGHITDDRQLFAAACYAAKVTLTALGEIFEAARSIMGWLGDCAKVIASE-NQPVRWTTPL 872
D ++ A+ Y T +L E+F + R I W +CA++IA +Q V W TPL
Sbjct: 1153 IDDFPKD-WVWPASTYLTTKTFESLREMFTSTREIQDWFTECARLIAGVCSQNVEWVTPL 1211
Query: 873 GLPVVQPYCKNE-----RHLIRT-SLQVLALQREGNLVKIRKQRTAFPPNFVHSLDGSHM 926
GLPVVQPY + E RH +R S + + N++ KQ+ AFPPNF+HSLD SHM
Sbjct: 1212 GLPVVQPYNRQELKPVARHGLRVISNMPMDMYERPNIL---KQKNAFPPNFIHSLDSSHM 1268
Query: 927 MMTAVACRDAGLHFAGL 943
M+T++ C G+ F +
Sbjct: 1269 MLTSLHCERQGITFVSV 1285
>gi|195575683|ref|XP_002077706.1| GD22928 [Drosophila simulans]
gi|194189715|gb|EDX03291.1| GD22928 [Drosophila simulans]
Length = 1369
Score = 362 bits (930), Expect = 4e-97, Method: Compositional matrix adjust.
Identities = 247/735 (33%), Positives = 378/735 (51%), Gaps = 71/735 (9%)
Query: 247 YAPHIELLPADKVAVIVMHKMMGLVMAGHEDRCVQVVQAAVHIGMAIEQEIRIHSFLEKT 306
Y +++ L A A I++ ++ L G E V Q +G ++Q +I +K
Sbjct: 579 YYTYLKTLDASHFADILIKELYKLA-EGSETFSPTVGQLYKELGQKVQQRYQIE---QKK 634
Query: 307 KNYKRKKIIADTEEVLSKEKELLRKRVNSLIKSKRVMEAQKLLKNEETK----------P 356
N +KI E+ S EL +S + +A + L +E+ + P
Sbjct: 635 HNGTLEKI----GEIYSSYCELW----DSGMSQDNTRQAWQRLVHEQRESGPSMDLPEVP 686
Query: 357 WGRDTQAKLGSRLVELLIETAYV------QHPVNPADYSPPDVRPAFRHRFKTILKHPGQ 410
W + +G L +L+ + Q + A P ++ PAF T+ ++ G
Sbjct: 687 WPSNVLTGVGRFLYNILMRDIKIDAHIMRQKSKSKAAAQPQNLLPAFY----TLFRNQG- 741
Query: 411 KTTKRYGVVECDPL-VLEGLDRSAKHMLIPY----VPMLVPPKKWKGYNKGGYLFLPSYV 465
R+ E P VL L R+++ + + VPML PP+ W + GGYL S +
Sbjct: 742 ----RFVKEEVKPHPVLSRLFRASRQQTLTFDSNLVPMLCPPQPWSTPHNGGYLLNKSEL 797
Query: 466 MRT-HGSRKQQEALKSVTGNCMKKVFEALDTLGSTKWRVNKQVLSVLESIWVSGGNIAGL 524
+R H + +Q + + + + ++L+ L S WRVN Q+L V+ ++ +GG+
Sbjct: 798 IRLPHQAIQQWDRIMASNPQQLYPALDSLNQLASVPWRVNTQLLDVIIKVFQNGGDAKLD 857
Query: 525 VDRNDVLIPEKPLSEDMTEVQKWKWSVRKAKKINQ---------ERHSQRCDTELKLSVA 575
V + +P P S +AK+ E +S CD +LS+A
Sbjct: 858 VPQPPSSLPPLPTLPAKDAEGNATSSADRAKQFRDKLGHRRKQAEMYSLWCDALYRLSLA 917
Query: 576 RRMKDEEGFYYPHNLDFRGRAYPMHPHLNHLSSDVCRGVLEFAEGRPLGKSGLRWLKIHL 635
+ +D+ F+ PHN+DFRGR YP+ PHLNHL SD+ R +L F + +PLG G WLK+H
Sbjct: 918 QHYRDK-VFWLPHNMDFRGRVYPVPPHLNHLGSDLARSMLIFDQAQPLGVDGFSWLKLHC 976
Query: 636 ANLFSGGVEKLSHDGRLAFVENHLYEIFDSAENPINGSRWWLTAEDPFQCLAACINLSEA 695
NL +G ++ S RL + E + +I DSA+NP+ G WW +++P+Q LA C+ ++
Sbjct: 977 INL-TGLKKRDSVRERLLYAEEIMPDILDSADNPLTGRMWWSKSDEPWQTLACCMEIANV 1035
Query: 696 LKSSSPHSVISHLPIHQDGSCNGLQHYAALGRNTLEAAAVNLVAGEKPADVYSEIAVRVH 755
+ P + +S PIHQDGSCNGLQHYAALGR+ A +VNL P DVYS +A V
Sbjct: 1036 HRCPDPAAYLSRFPIHQDGSCNGLQHYAALGRDEAGARSVNLAPSAIPQDVYSAVAALVE 1095
Query: 756 EIMKRDSNKDPSKHPQALLAKILIDQVDRKLVKQTVMTSVYGVTFVGAREQIKRRLEEKG 815
+ K D+ +A+ L V RK++KQTVMT+VYGVT GAR QI R+L++
Sbjct: 1096 KSRKADAQNGLH------VAEALAGFVRRKVIKQTVMTTVYGVTRYGARLQIARQLKDID 1149
Query: 816 HITDDRQLFAAACYAAKVTLTALGEIFEAARSIMGWLGDCAKVIASE-NQPVRWTTPLGL 874
D ++ A+ Y T +L E+F + R I W +CA++I+ +Q V W TPLGL
Sbjct: 1150 DFPKD-WVWPASTYLTTKTFESLREMFTSTREIQDWFTECARLISGVCSQNVEWVTPLGL 1208
Query: 875 PVVQPYCKNE-RHLIRTSLQVLA-----LQREGNLVKIRKQRTAFPPNFVHSLDGSHMMM 928
PVVQPY + E +H R+ +V A + N++ KQ+ AFPPNF+HSLD SHMM+
Sbjct: 1209 PVVQPYNRQEMKHSPRSGFKVSANMPMDMYERPNIL---KQKNAFPPNFIHSLDSSHMML 1265
Query: 929 TAVACRDAGLHFAGL 943
T++ C G+ F +
Sbjct: 1266 TSLHCERQGITFVSV 1280
>gi|198475283|ref|XP_001356998.2| GA18324 [Drosophila pseudoobscura pseudoobscura]
gi|198138752|gb|EAL34064.2| GA18324 [Drosophila pseudoobscura pseudoobscura]
Length = 1363
Score = 362 bits (930), Expect = 4e-97, Method: Compositional matrix adjust.
Identities = 226/613 (36%), Positives = 334/613 (54%), Gaps = 45/613 (7%)
Query: 356 PWGRDTQAKLGSRLVELL-----IETAYVQHPVNPADYSPPDVRPAFRHRFKTILKHPGQ 410
PW + A +G L +L I+ ++ S ++ PAF T+ ++ G+
Sbjct: 682 PWPSNVLAGVGRFLYNILMRDIKIDPHIMRQKSKSKTTSSQNLLPAFY----TLFRNQGR 737
Query: 411 KTTKRYGVVECDPLVLEGLDRSAKHMLIPY----VPMLVPPKKWKGYNKGGYLFLPSYVM 466
+ V+ P VL L R ++ + + VPML PP+ W + GGYL S ++
Sbjct: 738 LVKEE---VKPHP-VLSRLLRGSRQQTLTFDSNLVPMLCPPQPWSTPHNGGYLLNKSELI 793
Query: 467 RT-HGSRKQQEALKSVTGNCMKKVFEALDTLGSTKWRVNKQVLSVLESIWVSGGNIAGLV 525
R H + +Q E +++ + ++L+ L S WRVN Q+L V+ ++ +GG+ V
Sbjct: 794 RLPHQAIQQWERIRASNPQHLYPALDSLNQLASVPWRVNTQLLDVIIEVFQNGGDAKLDV 853
Query: 526 DRNDVLIPEKPL-----------SEDMTEVQKWKWSVRKAKKINQERHSQRCDTELKLSV 574
+ +P P + D+ + + K R+ K E +S CD +LS+
Sbjct: 854 PQPPTSLPPLPTILKNSEGSGVSNADLAKQFREKLGHRRKKA---EMYSLWCDALYRLSL 910
Query: 575 ARRMKDEEGFYYPHNLDFRGRAYPMHPHLNHLSSDVCRGVLEFAEGRPLGKSGLRWLKIH 634
A+ +D+ F+ PHN+DFRGR YP+ PHLNHL SD+ R +L F + +PLG G WLK+H
Sbjct: 911 AQHYRDKV-FWLPHNMDFRGRVYPVPPHLNHLGSDLARSMLIFDQAQPLGVDGFSWLKLH 969
Query: 635 LANLFSGGVEKLSHDGRLAFVENHLYEIFDSAENPINGSRWWLTAEDPFQCLAACINLSE 694
NL +G ++ S RL + E + EI DSA+NP+ G WW ++ P+Q L C+ ++
Sbjct: 970 CINL-TGLKKRDSVRERLLYAEEIMPEILDSADNPLTGGMWWAKSDAPWQTLGCCMEIAN 1028
Query: 695 ALKSSSPHSVISHLPIHQDGSCNGLQHYAALGRNTLEAAAVNLVAGEKPADVYSEIAVRV 754
+S P + +S PIHQDGSCNGLQHYAALGR+ A +VNL P DVYS +A V
Sbjct: 1029 VHRSPDPAAYMSRFPIHQDGSCNGLQHYAALGRDKAGAYSVNLAPSPIPQDVYSAVATLV 1088
Query: 755 HEIMKRDSNKDPSKHPQALLAKILIDQVDRKLVKQTVMTSVYGVTFVGAREQIKRRLEEK 814
K D+ +A+ L V RK++KQTVMT+VYGVT GAR QI R+L++
Sbjct: 1089 ERGRKADAQNGLH------VAEALAGFVRRKVIKQTVMTTVYGVTRYGARLQIARQLKDI 1142
Query: 815 GHITDDRQLFAAACYAAKVTLTALGEIFEAARSIMGWLGDCAKVIASE-NQPVRWTTPLG 873
D ++ A+ Y T +L E+F + R I W +CA++I+ +Q V W TPLG
Sbjct: 1143 DDFPKD-WVWPASTYLTTKTFESLREMFTSTREIQDWFTECARLISGVCSQNVEWITPLG 1201
Query: 874 LPVVQPYCKNE-RHLIRTSLQVLALQREGNLVK--IRKQRTAFPPNFVHSLDGSHMMMTA 930
LPVVQPY + E +H RT L+V A + I KQ+ AFPPNF+HSLD SHMM+T+
Sbjct: 1202 LPVVQPYNRQEIKHTSRTGLRVNANMSMDMYERPNILKQKNAFPPNFIHSLDSSHMMLTS 1261
Query: 931 VACRDAGLHFAGL 943
+ C G+ F +
Sbjct: 1262 LHCERKGITFVSV 1274
>gi|147865920|emb|CAN83054.1| hypothetical protein VITISV_027927 [Vitis vinifera]
Length = 1299
Score = 362 bits (929), Expect = 5e-97, Method: Compositional matrix adjust.
Identities = 178/271 (65%), Positives = 198/271 (73%), Gaps = 66/271 (24%)
Query: 530 VLIPEKPLSEDMTEVQKWKWSVRKAKKINQERHSQRCDTELKLS---------------- 573
V +PEKP +ED+TE+Q WKW+ RKAKKINQERHS RCDTE+KLS
Sbjct: 934 VPLPEKPSTEDLTEIQNWKWNARKAKKINQERHSLRCDTEIKLSLMIKPGFEDSLAQMKY 993
Query: 574 ---------------------------------VARRMKDEEGFYYPHNLDFRGRAYPMH 600
VAR+MKDEEGFYYPHNLDFRGRAYPMH
Sbjct: 994 WRGSVKSRLLWLPSLEELCSFVSFSAKQXHFEQVARKMKDEEGFYYPHNLDFRGRAYPMH 1053
Query: 601 PHLNHLSSDVCRGVLEFAEGRPLGKSGLRWLKIHLANLFSGGVEKLSHDGRLAFVENHLY 660
PHLNHLSSD+CRGVLEFAEGRPLGKSGLRWLKI LANL++GGVEKLS+DGRLAFV+NHL
Sbjct: 1054 PHLNHLSSDLCRGVLEFAEGRPLGKSGLRWLKIQLANLYAGGVEKLSYDGRLAFVDNHLD 1113
Query: 661 EIFDSAENPINGSRWWLTAEDPFQCLAACINLSEALKSSSPHSVISHLPIHQDGSCNGLQ 720
++FDSA+NP+NG+RWWLTAEDPFQCLAACINLSEAL+SSSPH+VISHLPIHQ
Sbjct: 1114 DVFDSADNPLNGNRWWLTAEDPFQCLAACINLSEALRSSSPHTVISHLPIHQ-------- 1165
Query: 721 HYAALGRNTLEAAAVNLVAGEKPADVYSEIA 751
LEA+AVNLVAGEKPADVYSEIA
Sbjct: 1166 ---------LEASAVNLVAGEKPADVYSEIA 1187
>gi|148699720|gb|EDL31667.1| polymerase (RNA) mitochondrial (DNA directed), isoform CRA_b [Mus
musculus]
Length = 1078
Score = 362 bits (929), Expect = 6e-97, Method: Compositional matrix adjust.
Identities = 212/560 (37%), Positives = 318/560 (56%), Gaps = 30/560 (5%)
Query: 349 LKNEETKPWGRDTQAKLGSRLVELLIETAYVQHPVNPADYSPPDVRPAFRHRFKTILKHP 408
L+ +PW +LG +L ELL++ VQ P + A R + +
Sbjct: 530 LEAPAQQPWSVPVLLQLGKQLAELLVQA--VQMPRSLA------ARQGAQRSIPVLYHVY 581
Query: 409 GQKTTKRYGVVECDPLVLEGLDRSAKHMLI---PYVPMLVPPKKWKGYNKGGYLFLPSYV 465
++ ++ G+++ P L+ +A+ L VPML PP W + G YL + +
Sbjct: 582 SFRSYRQVGILKPHPAFTHLLETAAEPTLTFETTEVPMLCPPLPWTSLHSGAYLLSSTKL 641
Query: 466 MR-THGSRKQQEALKSVTGNCMKKVFEALDTLGSTKWRVNKQVLSVLESIWVSGGNIAGL 524
MR T G+ + Q L+ + +AL LG+ WRVN +L ++ I+ G +
Sbjct: 642 MRATEGTTQHQRLLEQCPPAQLHGPLDALTQLGNCAWRVNGHLLDLVLQIFRDKGCMPLG 701
Query: 525 VD--RNDVLIPEK-PLSEDMTEVQK--WKWSVRKAKKINQERHSQRCDTELKLSVARRMK 579
V R++ P + L T V K + + + K+ +E HS R + +LS+A+ ++
Sbjct: 702 VPPPRSEAPRPARYQLPPGSTPVHKSELRKELARCLKVAREMHSLRSEALYRLSLAQHLR 761
Query: 580 DEEGFYYPHNLDFRGRAYPMHPHLNHLSSDVCRGVLEFAEGRPLGKSGLRWLKIHLANLF 639
F+ PHN+DFRGR YP PH NHL SD+ R +LEFAEGRPLG GL WLKIHL NL
Sbjct: 762 -HRVFWLPHNMDFRGRTYPCPPHFNHLGSDLARALLEFAEGRPLGPRGLDWLKIHLINL- 819
Query: 640 SGGVEKLSHDGRLAFVENHLYEIFDSAENPINGSRWWLTAEDPFQCLAACINLSEALKSS 699
+G + S RLAF + + EI DSA+NP+ G +WW+ A++P+Q LA C+ ++ A++S
Sbjct: 820 TGLKKGDSLRMRLAFADEVMEEILDSADNPLTGRKWWMEADEPWQTLACCMEVAHAVRSP 879
Query: 700 SPHSVISHLPIHQDGSCNGLQHYAALGRNTLEAAAVNLVAGEKPADVYSEIAVRVHEIMK 759
P + ISHLP+HQDGSCNGLQHYAALGR+++ AA+VNL + P DVY E+A +V E +
Sbjct: 880 DPAAYISHLPVHQDGSCNGLQHYAALGRDSVGAASVNLTPSDLPQDVYREVATQVEEFRQ 939
Query: 760 RDSNKDPSKHPQALLAKILIDQVDRKLVKQTVMTSVYGVTFVGAREQIKRRLEEKGHITD 819
+D+ + +A++L + RK+VKQTVMT VYGVT G R QI++RL E ++D
Sbjct: 940 QDAKEG------LRVAQVLEGFISRKVVKQTVMTVVYGVTRYGGRLQIEKRLRE---LSD 990
Query: 820 DRQLFA--AACYAAKVTLTALGEIFEAARSIMGWLGDCAKVIASENQPVRWTTPLGLPVV 877
Q F A+ Y + +L E+F + R+I WL + A +I+ PV W TPLG+P++
Sbjct: 991 FPQEFVWEASHYLVRQVFKSLQEMFTSTRAIQHWLTESANLISHAGWPVEWVTPLGIPII 1050
Query: 878 QPYCKNERHLIRTSLQVLAL 897
QPY + + ++ LQ + L
Sbjct: 1051 QPYHRESKVQVKGGLQSITL 1070
>gi|425885852|gb|ADK56281.1| putative T7-like RNA polymerase [Heterocapsa triquetra]
Length = 1106
Score = 362 bits (928), Expect = 8e-97, Method: Compositional matrix adjust.
Identities = 265/818 (32%), Positives = 400/818 (48%), Gaps = 94/818 (11%)
Query: 179 RRRQVKQETEAWERMVDEYKELEAKMIEKRLAPNLPHIKGLFLGWFGPLSEAIE------ 232
RRRQ+ E E + ++ E +A++I++ A + +++ W L E IE
Sbjct: 259 RRRQLVIERETLTMALRDFLEDQARLIQEGNAAAAHGSRKVWMDWVRALVEQIEALRDDD 318
Query: 233 --REQKMQRTKKQKAAYAPHIELLPADK--VAVIVMHKMMGLVMAGH-----EDRCVQVV 283
E K + + + A A + LP D +AVI H ++ ++ H E V
Sbjct: 319 ADNEVKARVLQGKGAKAAKLMRDLPLDAQLLAVITCHTVLNQMLVPHYRNENEPGMAPFV 378
Query: 284 QAAVHIGMAIEQEIRIHSFLEKTKNYKRKKIIADTEEVLSKEKELLRKRVNSLIKSKRVM 343
V +G A+E E I ++E+ ++ K +R +N L +
Sbjct: 379 SLVVAVGDAVENEC-----------------IYRSQELPTQAKREIRVLINQLQR----- 416
Query: 344 EAQKLLKNEETKPWGRDTQA-KLGSRLVELLIETAYVQHPVNPADYSPPDVRPAFRHRFK 402
+N + W + +Q +G+ LV++L+E VQ + P + AF H
Sbjct: 417 ------RNSLGRLWDKASQTVPIGAALVDMLLEVGQVQDGLAPDGSG---MAKAFTHELV 467
Query: 403 TILKHP---GQKTTKRYGVVECDPLVLEGLDRSAKHMLIPYVPMLVPPKKWKGYN---KG 456
KH K T R EGL R +++ + PM+VPP W+ +G
Sbjct: 468 WEGKHKLCGYVKLTDRARQALVIGTDAEGLMR---YLVPKHQPMVVPPVPWRPSGESPQG 524
Query: 457 GYLFLPSYVMRTHGSRKQQEALKSVTGNCMKKVFEALDTLGSTKWRVNKQVLSVLESIWV 516
YL +RT ++L + V +D++GST WRVNK +L ++E +
Sbjct: 525 CYLMRSVPFIRT-----PMQSLAQLRAYSPTTVARVMDSVGSTPWRVNKDILRLMEEVSQ 579
Query: 517 SGGNIAGLVDRNDVLIPEKPLSEDMTEVQKWK-WSVRK--AKKINQERHSQRCDTELKLS 573
+AG+ ++ +P P + Q K +R+ A K Q+ S R LKL
Sbjct: 580 RDLAVAGVPPHHNPEVPVLPKDQGSLSEQALKDLKLRRDNAMKQCQQLASDRPTFFLKLR 639
Query: 574 VARRMKDEEGFYYPHNLDFRGRAYPMHPHLNHLSSDVCRGVLEFAEGRPLGKSGLRWLKI 633
A+ + E Y+PHN+DFRGRAYP+ PHLNH+ DVCRG+L+FA+ +PLGK GL WLK+
Sbjct: 640 SAQDFEHAERIYFPHNVDFRGRAYPVPPHLNHIGDDVCRGLLQFADPKPLGKDGLYWLKV 699
Query: 634 HLANLFSGGVEKLSHDGRLAFVENHLYEIFDSAENPINGS--RWWLTAED-PFQCLAACI 690
+ L G K++ D R+ +++ I AE+P+ ++W A+D P+Q LA C
Sbjct: 700 TICGLL--GKNKITFDARVEYIDGLKELIIAVAEDPLAEEHLKFWAEADDGPWQTLARCQ 757
Query: 691 NLSEALKSSSPHSVISHLPIHQDGSCNGLQHYAALGRNTLEAAAVNLVAGEKPADVYSEI 750
L+ A KS P S +S PIH DG+CNGLQHYAALGR+ AVNL ++P DVY+ +
Sbjct: 758 ELAAAWKSGDPESFMSAQPIHLDGTCNGLQHYAALGRDEAGGHAVNLTPSDRPQDVYTIV 817
Query: 751 AVRVHEIMKRDSNKDPSKHP-----------------------QALLAKILIDQVDRKLV 787
V E ++R++N K Q + I + + RK+V
Sbjct: 818 LGVVTEKVEREANPVAVKGGKPKGNAADAEAEEAVDAKLEETRQLAVQAIELGVLQRKVV 877
Query: 788 KQTVMTSVYGVTFVGAREQIKRRLEEK-GHITDDRQLFAAACYAAKVTLTALGEIFEAAR 846
KQTVMT YGVT +GA QI+ +LE+ G + L A Y K L+++ E+FE A
Sbjct: 878 KQTVMTICYGVTKIGAIAQIQGQLEDMCGDKVSSKDLKPLARYLTKHVLSSIDEVFEQAM 937
Query: 847 SIMGWLGDCAKVIASENQPVRWTTPLGLPVVQPYCKNERHLIRTSLQVLALQR-EGNLVK 905
I W +K++ P W +P+GL QPY K++ + T LQ ++++ +G V
Sbjct: 938 EIKRWFDKVSKIMNGLEVPTSWVSPIGLACAQPYKKSKSVQVLTKLQKVSIKEADGTFVN 997
Query: 906 IRKQRTAFPPNFVHSLDGSHMMMTAVACRDAGLHFAGL 943
KQR FPPNF+HSLD SHMMMTA CR G+ FAG+
Sbjct: 998 KAKQRMGFPPNFIHSLDASHMMMTADGCRRDGILFAGV 1035
>gi|195118034|ref|XP_002003545.1| GI21974 [Drosophila mojavensis]
gi|193914120|gb|EDW12987.1| GI21974 [Drosophila mojavensis]
Length = 1366
Score = 361 bits (926), Expect = 1e-96, Method: Compositional matrix adjust.
Identities = 224/614 (36%), Positives = 336/614 (54%), Gaps = 43/614 (7%)
Query: 356 PWGRDTQAKLGSRLVELL-----IETAYVQHPVNPADYS----PPDVRPAFRHRFKTILK 406
PW + + +G L +L I+ ++ N + + P ++ PAF T+ +
Sbjct: 681 PWPNNVLSGVGRFLYNILMRDIKIDAHIMRQRSNKSKATGTTMPQNMLPAFY----TLFR 736
Query: 407 HPGQKTTKRYGVVECDPLVLEGLDRSAKHMLIPY----VPMLVPPKKWKGYNKGGYLFLP 462
+ G+ + V+ P VL L R+++ + + VPML PP+ W + GGYL
Sbjct: 737 NQGRLVKEE---VKPHP-VLSRLLRASRQQTLTFDSNLVPMLCPPQPWSTPHNGGYLLNK 792
Query: 463 SYVMRT-HGSRKQQEALKSVTGNCMKKVFEALDTLGSTKWRVNKQVLSVLESIWVSGGNI 521
S ++R H + +Q E + + + ++L+ L S WRVN Q+L V+ ++ +GG+
Sbjct: 793 SELIRLPHQAVQQWERIHASNPQHLYPALDSLNQLASVPWRVNTQLLDVIIKVFQNGGDA 852
Query: 522 ---AGLVDRNDVLIPEKPLSEDMTEVQKWKWSVRKAKKINQER-----HSQRCDTELKLS 573
+ +P P+ ED + V + + K+ R +S CD +LS
Sbjct: 853 KLDVPQPPSSLPPLPTLPVGEDGSGVSPADRAKQFRDKLGHRRKQAEMYSLWCDALYRLS 912
Query: 574 VARRMKDEEGFYYPHNLDFRGRAYPMHPHLNHLSSDVCRGVLEFAEGRPLGKSGLRWLKI 633
+A+ +D+ F+ PHN+DFRGR YP+ PHLNHL SD+ R +L F + +PLG G WLK+
Sbjct: 913 LAQHYRDKV-FWLPHNMDFRGRVYPVPPHLNHLGSDLARSMLIFDQAQPLGVDGFSWLKL 971
Query: 634 HLANLFSGGVEKLSHDGRLAFVENHLYEIFDSAENPINGSRWWLTAEDPFQCLAACINLS 693
H NL +G ++ S RL + E + +I DSA+NP+ G WW +++P+Q LA C+ ++
Sbjct: 972 HCINL-TGIKKRDSVRERLLYAEEIMPDILDSADNPLTGRMWWSKSDEPWQTLACCMEIA 1030
Query: 694 EALKSSSPHSVISHLPIHQDGSCNGLQHYAALGRNTLEAAAVNLVAGEKPADVYSEIAVR 753
+S P + +S PIHQDGSCNGLQHYAALGR+ A +VNL P DVYS +A
Sbjct: 1031 NVYRSPDPAAYMSRFPIHQDGSCNGLQHYAALGRDQAGACSVNLAPSPIPQDVYSSVAAL 1090
Query: 754 VHEIMKRDSNKDPSKHPQALLAKILIDQVDRKLVKQTVMTSVYGVTFVGAREQIKRRLEE 813
V K D+ +A+ L V RK++KQTVMT+VYGVT GAR QI R+L++
Sbjct: 1091 VERTRKTDAENGLH------VAQALEGFVRRKVIKQTVMTTVYGVTRYGARLQIARQLKD 1144
Query: 814 KGHITDDRQLFAAACYAAKVTLTALGEIFEAARSIMGWLGDCAKVIASE-NQPVRWTTPL 872
D ++ A+ Y T +L E+F + R I W +CA++IA +Q V W TPL
Sbjct: 1145 IDDFPKD-WVWPASTYLTTKTFESLREMFTSTREIQDWFTECARLIAGVCSQNVEWVTPL 1203
Query: 873 GLPVVQPYCKNE-RHLIRTSLQVLALQREGNLVK--IRKQRTAFPPNFVHSLDGSHMMMT 929
GLPVVQPY + E +H L+V A + I KQ+ AFPPNF+HSLD SHMM+T
Sbjct: 1204 GLPVVQPYNRQEMKHPQSKGLRVNAHMSMDMYERPNILKQKNAFPPNFIHSLDSSHMMLT 1263
Query: 930 AVACRDAGLHFAGL 943
++ C G+ F +
Sbjct: 1264 SLHCERKGITFVSV 1277
>gi|195350263|ref|XP_002041660.1| GM16628 [Drosophila sechellia]
gi|194123433|gb|EDW45476.1| GM16628 [Drosophila sechellia]
Length = 1364
Score = 360 bits (925), Expect = 1e-96, Method: Compositional matrix adjust.
Identities = 247/735 (33%), Positives = 378/735 (51%), Gaps = 71/735 (9%)
Query: 247 YAPHIELLPADKVAVIVMHKMMGLVMAGHEDRCVQVVQAAVHIGMAIEQEIRIHSFLEKT 306
Y +++ L A A I++ ++ L G E V Q +G ++Q +I +K
Sbjct: 574 YYTYLKTLDASHFADILIKELYKLA-EGSETFSPTVGQLYKELGQKVQQRYQIE---QKK 629
Query: 307 KNYKRKKIIADTEEVLSKEKELLRKRVNSLIKSKRVMEAQKLLKNEETK----------P 356
N +KI E+ S EL +S + +A + L +E+ + P
Sbjct: 630 HNGTLEKI----GEIYSSYCELW----DSGMSQDNTRQAWQRLVHEQRESGPSMDLPEVP 681
Query: 357 WGRDTQAKLGSRLVELLIETAYV------QHPVNPADYSPPDVRPAFRHRFKTILKHPGQ 410
W + +G L +L+ + Q + A P ++ PAF T+ ++ G
Sbjct: 682 WPSNVLTGVGRFLYNILMRDIKIDAHIMRQKSKSKAAAQPQNLLPAFY----TLFRNQG- 736
Query: 411 KTTKRYGVVECDPL-VLEGLDRSAKHMLIPY----VPMLVPPKKWKGYNKGGYLFLPSYV 465
R+ E P VL L R+++ + + VPML PP+ W + GGYL S +
Sbjct: 737 ----RFVKEEVKPHPVLSRLFRASRQQTLTFDSNLVPMLCPPQPWSTPHNGGYLLNKSEL 792
Query: 466 MRT-HGSRKQQEALKSVTGNCMKKVFEALDTLGSTKWRVNKQVLSVLESIWVSGGNIAGL 524
+R H + +Q + + + + ++L+ L S WRVN Q+L V+ ++ +GG+
Sbjct: 793 IRLPHQAIQQWDRIMASNPQHLYPGLDSLNQLASVPWRVNTQLLDVIIKVFQNGGDAKLD 852
Query: 525 VDRNDVLIPEKPLSEDMTEVQKWKWSVRKAKKINQ---------ERHSQRCDTELKLSVA 575
V + +P P S +AK+ E +S CD +LS+A
Sbjct: 853 VPQPPSSLPPLPTLPAKDAEGNATSSADRAKQFRDKLGHRRKQAEMYSLWCDALYRLSLA 912
Query: 576 RRMKDEEGFYYPHNLDFRGRAYPMHPHLNHLSSDVCRGVLEFAEGRPLGKSGLRWLKIHL 635
+ +D+ F+ PHN+DFRGR YP+ PHLNHL SD+ R +L F + +PLG G WLK+H
Sbjct: 913 QHYRDK-VFWLPHNMDFRGRVYPVPPHLNHLGSDLARSMLIFDQAQPLGVDGFSWLKLHC 971
Query: 636 ANLFSGGVEKLSHDGRLAFVENHLYEIFDSAENPINGSRWWLTAEDPFQCLAACINLSEA 695
NL +G ++ S RL + E + +I DSA+NP+ G WW +++P+Q LA C+ ++
Sbjct: 972 INL-TGLKKRDSVRERLLYAEEIMPDILDSADNPLTGRMWWSKSDEPWQTLACCMEIANV 1030
Query: 696 LKSSSPHSVISHLPIHQDGSCNGLQHYAALGRNTLEAAAVNLVAGEKPADVYSEIAVRVH 755
+ P + +S PIHQDGSCNGLQHYAALGR+ A +VNL P DVYS +A V
Sbjct: 1031 HRCPDPAAYLSRFPIHQDGSCNGLQHYAALGRDEAGARSVNLAPSAIPQDVYSAVAALVE 1090
Query: 756 EIMKRDSNKDPSKHPQALLAKILIDQVDRKLVKQTVMTSVYGVTFVGAREQIKRRLEEKG 815
+ K D+ +A+ L V RK++KQTVMT+VYGVT GAR QI R+L++
Sbjct: 1091 KSRKADAQNGLH------VAEALAGFVRRKVIKQTVMTTVYGVTRYGARLQIARQLKDID 1144
Query: 816 HITDDRQLFAAACYAAKVTLTALGEIFEAARSIMGWLGDCAKVIASE-NQPVRWTTPLGL 874
D ++ A+ Y T +L E+F + R I W +CA++I+ +Q V W TPLGL
Sbjct: 1145 DFPKD-WVWPASTYLTTKTFESLREMFTSTREIQDWFTECARLISGVCSQNVEWVTPLGL 1203
Query: 875 PVVQPYCKNE-RHLIRTSLQVLA-----LQREGNLVKIRKQRTAFPPNFVHSLDGSHMMM 928
PVVQPY + E +H R+ +V A + N++ KQ+ AFPPNF+HSLD SHMM+
Sbjct: 1204 PVVQPYNRQEMKHSPRSGFKVSANMPMDMYERPNIL---KQKNAFPPNFIHSLDSSHMML 1260
Query: 929 TAVACRDAGLHFAGL 943
T++ C G+ F +
Sbjct: 1261 TSLHCERHGITFVSV 1275
>gi|170582929|ref|XP_001896353.1| DNA-dependent RNA polymerase family protein [Brugia malayi]
gi|158596464|gb|EDP34803.1| DNA-dependent RNA polymerase family protein [Brugia malayi]
Length = 1129
Score = 359 bits (922), Expect = 3e-96, Method: Compositional matrix adjust.
Identities = 225/620 (36%), Positives = 331/620 (53%), Gaps = 53/620 (8%)
Query: 357 WGRDTQAKLGSRLVELLIETAYVQHPVNPADYSPPDVRPAFRHRFKTILKHPGQKTTKRY 416
+G + +LGS L +++E Q + D P F +K ++ +
Sbjct: 445 FGSGIREQLGSFLTSVVLEAC--QAHIKAGDLGKTISIPVFS--YKDVVNEESSFDGEVL 500
Query: 417 GVVECDPLVLEGLDRSAKH----MLIP--YVPMLVPPKKWKGYNKGGYLFLPSY-VMRTH 469
V + + ++ +KH M+ P +PM VPP+ W +GG + S+ V+R H
Sbjct: 501 CVTKMVKICNAMMEVVSKHQFEWMVFPTDLLPMEVPPRPWLDSGEGGPYYGSSFNVLRPH 560
Query: 470 G-------SRKQQEALKSVTGNCMKKVFEALDTLGSTKWRVNKQVLSVLESIWVSGGNIA 522
+ + ++ LKS + VF+AL+ LG T W++N+ VL V ++
Sbjct: 561 PDYSMINVNYEMKKRLKSRKQ--ARPVFDALNDLGITPWKINEPVLDVALKVFEMAQTNT 618
Query: 523 GLVDRNDVLIPEKP--------------LSEDMTEVQKWKWSVR---KAKKINQERHSQR 565
+ IP P + D + W+ + +A K E +S
Sbjct: 619 DEKFLEKLSIPIHPSRVPIPDYVVKFGNMEVDELPINDWREYSKAKYEAMKKRNELNSLW 678
Query: 566 CDTELKLSVARRMKDEEGFYYPHNLDFRGRAYPMHPHLNHLSSDVCRGVLEFAEGRPLGK 625
C +L++A K F+ PH++DFRGR YP+ P+LNH+ D+ R +L FAEGRPLG
Sbjct: 679 CWLLYRLTMANHFKGSVLFF-PHSMDFRGRVYPITPYLNHMGDDLNRSLLVFAEGRPLGD 737
Query: 626 SGLRWLKIHLANLFSGGVEKLSHDGRLAFVENHLYEIFDSAENPINGSRWWLTAEDPFQC 685
GLRWLK+H NL +G ++K S+ R+A+ + L +I +SA P++G WW +E+P+Q
Sbjct: 738 DGLRWLKLHCINL-TGILKKESNFSRVAYADEMLPKILESANEPLSGEMWWTKSEEPWQT 796
Query: 686 LAACINLSEALKSSSPHSVISHLPIHQDGSCNGLQHYAALGRNTLEAAAVNLVAGEKPAD 745
L+ACI + AL++ +P + +SHLP++QDGSCNGLQHYAALGR+ VNLV EKP+D
Sbjct: 797 LSACIEIRNALQTGNPTTFVSHLPVYQDGSCNGLQHYAALGRDQEGGKEVNLVPAEKPSD 856
Query: 746 VYSEIAVRVHEIMKRDSNKDPSK-HPQAL-LAKILIDQVDRKLVKQTVMTSVYGVTFVGA 803
VYS +A RV + D S+ H AL L ++ + RK++KQTVMT+VYGVT GA
Sbjct: 857 VYSSVAARVEQKRLEDEQSPESEVHDLALSLRTVMPGPISRKVIKQTVMTTVYGVTMNGA 916
Query: 804 REQIKRRLEEKGHITDDRQLFAAACYAAKVTLTALGEIFEAARSIMGWLGDCAKVIASEN 863
R QI+R+L K D + A Y A T +L + F ++ + W DCA+ I
Sbjct: 917 RRQIERQL--KAMEIDSNERMKYATYLADRTFRSLNDAFTSSMKMKDWFRDCAEAIVKLM 974
Query: 864 QPVRWTTPLGLPVVQPYCKNERHLIRTSLQVLALQREGNLVKIRKQRTAFPPNFVHSLDG 923
V W TPLGLPV QPY + T ++ + R L K KQ AFPPNFVHSLD
Sbjct: 975 HTVEWITPLGLPVYQPY-------LETKMEENKVYR---LPKSIKQINAFPPNFVHSLDS 1024
Query: 924 SHMMMTAVACRDAGLHFAGL 943
+HMM+TA+ CR G+ FA +
Sbjct: 1025 THMMLTALYCRRLGITFAAV 1044
>gi|156341453|ref|XP_001620765.1| hypothetical protein NEMVEDRAFT_v1g176655 [Nematostella vectensis]
gi|156206078|gb|EDO28665.1| predicted protein [Nematostella vectensis]
Length = 417
Score = 358 bits (920), Expect = 5e-96, Method: Compositional matrix adjust.
Identities = 179/376 (47%), Positives = 246/376 (65%), Gaps = 13/376 (3%)
Query: 571 KLSVARRMKDEEGFYYPHNLDFRGRAYPMHPHLNHLSSDVCRGVLEFAEGRPLGKSGLRW 630
KLSVA +D F+ P N+DFRGR YP+ PH H+ D+ RG+L+FAEG PLG GLRW
Sbjct: 6 KLSVANHFRDRV-FWLPLNMDFRGRVYPIPPHCCHVGDDLSRGMLQFAEGVPLGPDGLRW 64
Query: 631 LKIHLANLFSGGVEKLSHDGRLAFVENHLYEIFDSAENPINGSRWWLTAEDPFQCLAACI 690
LKIHLANL+ G +K S D R+ + + + E+ DSA+NP+ G+RWW+ ++P+Q LA C+
Sbjct: 65 LKIHLANLY-GAKKKSSLDERVEYTDQMMPEVLDSADNPLTGARWWMHGDEPWQVLATCM 123
Query: 691 NLSEALKSSSPHSVISHLPIHQDGSCNGLQHYAALGRNTLEAAAVNLVAGEKPADVYSEI 750
+++A++S P +SH P+HQDGSCNGLQHYAALG + A VNL+ ++P DVY+E+
Sbjct: 124 EIAKAVRSPDPAQYVSHQPVHQDGSCNGLQHYAALGHDRYGARQVNLIPADRPQDVYAEV 183
Query: 751 AVRVHEIMKRDSNKDPSKHPQALLAKILIDQVDRKLVKQTVMTSVYGVTFVGAREQIKRR 810
A V E D+ + +A +L D+V R++VKQTVMT VYGVTFVG R QI+R+
Sbjct: 184 AKLVEEARLHDAEQGHR------IATLLEDKVTRRVVKQTVMTIVYGVTFVGGRLQIERQ 237
Query: 811 LEEKGHITDDRQLFAAACYAAKVTLTALGEIFEAARSIMGWLGDCAKVIASENQPVRWTT 870
L++ D+R LF A+ Y ++G++F A++I W A IA V W T
Sbjct: 238 LKDLD--LDERVLFEASAYLVHKVFASIGQMFTRAKAIQDWFALSATHIAYTGHCVDWYT 295
Query: 871 PLGLPVVQPYCKNERHLIRTSLQVLALQREGNLVKI---RKQRTAFPPNFVHSLDGSHMM 927
PL L V QPYCK I+T LQ + + +G + + RKQR AFPPNFVHSLD +HMM
Sbjct: 296 PLSLYVCQPYCKKAVKTIKTRLQGIEIPTQGFAMSVPDSRKQRAAFPPNFVHSLDSTHMM 355
Query: 928 MTAVACRDAGLHFAGL 943
+TAV C+ AG++FA +
Sbjct: 356 LTAVHCQRAGINFASV 371
>gi|431922184|gb|ELK19275.1| DNA-directed RNA polymerase, mitochondrial [Pteropus alecto]
Length = 800
Score = 358 bits (919), Expect = 7e-96, Method: Compositional matrix adjust.
Identities = 180/389 (46%), Positives = 249/389 (64%), Gaps = 16/389 (4%)
Query: 560 ERHSQRCDTELKLSVARRMKDEEGFYYPHNLDFRGRAYPMHPHLNHLSSDVCRGVLEFAE 619
E HS R D +LS+A+ ++ F+ PHN+DFRGR YP PH NHL SD+ R +LEFAE
Sbjct: 341 EMHSLRTDALYRLSLAQHLR-HRVFWLPHNMDFRGRTYPCPPHFNHLGSDLARALLEFAE 399
Query: 620 GRPLGKSGLRWLKIHLANLFSGGVEKLSHDGRLAFVENHLYEIFDSAENPINGSRWWLTA 679
GRPLG GL WLKIHL NL +G ++ S RLAF E + +I DSA+ P+ G +WW+ A
Sbjct: 400 GRPLGPHGLDWLKIHLVNL-TGLKKRESLQARLAFAEEVMPDILDSADRPMTGRKWWMEA 458
Query: 680 EDPFQCLAACINLSEALKSSSPHSVISHLPIHQDGSCNGLQHYAALGRNTLEAAAVNLVA 739
++P+Q LA C+ ++ A+++ P + ISH P+HQDGSCNGLQHYAALGR+++ AA+VNLV
Sbjct: 459 DEPWQALACCMEIARAVRAPDPAAHISHFPVHQDGSCNGLQHYAALGRDSVGAASVNLVP 518
Query: 740 GEKPADVYSEIAVRVHEIMKRDSNKDPSKHPQALLAKILIDQVDRKLVKQTVMTSVYGVT 799
+ P DVYS +A +V ++D+ + +A++L + RK+VKQTVMT VYGVT
Sbjct: 519 SDLPQDVYSGVATQVEVFRRQDAEQG------MRVAQVLEGFISRKVVKQTVMTVVYGVT 572
Query: 800 FVGAREQIKRRLEEKGHITDDRQLFA--AACYAAKVTLTALGEIFEAARSIMGWLGDCAK 857
G R QI++RL E ++D Q F A+ Y + +L E+F R+I WL + A+
Sbjct: 573 RYGGRLQIEKRLRE---LSDFPQEFVWEASHYLVRQVFNSLQEMFSGTRAIQRWLAESAR 629
Query: 858 VIASENQPVRWTTPLGLPVVQPYCKNERHLIRTSLQVLALQREGNLVK---IRKQRTAFP 914
+IA V W TPLG+PV+QPY + + LI +Q L G+ + KQ+ FP
Sbjct: 630 LIARTGSAVEWVTPLGIPVIQPYHHDSKVLIGGGIQSLTFSNSGDTSQKPNTLKQKNGFP 689
Query: 915 PNFVHSLDGSHMMMTAVACRDAGLHFAGL 943
PNF+HSLD SHMM+TA+ C GL F +
Sbjct: 690 PNFIHSLDSSHMMLTALHCYRKGLTFVSV 718
>gi|194853889|ref|XP_001968243.1| GG24614 [Drosophila erecta]
gi|190660110|gb|EDV57302.1| GG24614 [Drosophila erecta]
Length = 1365
Score = 358 bits (918), Expect = 1e-95, Method: Compositional matrix adjust.
Identities = 221/616 (35%), Positives = 331/616 (53%), Gaps = 49/616 (7%)
Query: 356 PWGRDTQAKLGSRLVELLIETAYV------QHPVNPADYSPPDVRPAFRHRFKTILKHPG 409
PW +G L +L+ + Q A P ++ PAF T+ ++ G
Sbjct: 682 PWPSTVLIGVGRFLYNILMRDIKIDAHIMRQKSKAKAATQPQNMLPAF----YTLFRNQG 737
Query: 410 QKTTKRYGVVECDPL-VLEGLDRSAKHMLIPY----VPMLVPPKKWKGYNKGGYLFLPSY 464
R+ E P VL L R+++ + + VPML PP+ W + GGYL S
Sbjct: 738 -----RFVKEEVKPHPVLSRLFRASRKQTLTFDSNLVPMLCPPQPWSTPHNGGYLLNKSE 792
Query: 465 VMRT-HGSRKQQEALKSVTGNCMKKVFEALDTLGSTKWRVNKQVLSVLESIWVSGGNIAG 523
++R H + +Q + + + + ++L+ L S WRVN Q+L V+ ++ +GG+
Sbjct: 793 LIRLPHQAIQQWDRIMTSNPQNLYPALDSLNQLASVPWRVNTQLLDVIVHVFQNGGDAKL 852
Query: 524 LVDRNDVLIPEKPLSEDMTEVQKWKWSVRKAKKINQ---------ERHSQRCDTELKLSV 574
V + +P P+ S +AK+ E +S CD +LS+
Sbjct: 853 DVPQPPSSLPPLPMLPAKDAEGNAASSAERAKEFRDKLGYRRKQAEMYSLWCDALYRLSL 912
Query: 575 ARRMKDEEGFYYPHNLDFRGRAYPMHPHLNHLSSDVCRGVLEFAEGRPLGKSGLRWLKIH 634
A+ +D+ F+ PHN+DFRGR YP+ PHLNHL SD+ R +L F + +PLG G WLK+H
Sbjct: 913 AQHYRDKV-FWLPHNMDFRGRVYPVPPHLNHLGSDLARSMLIFDQAQPLGVDGFSWLKLH 971
Query: 635 LANLFSGGVEKLSHDGRLAFVENHLYEIFDSAENPINGSRWWLTAEDPFQCLAACINLSE 694
NL +G ++ S RL + E + +I DSA+NP+ G WW +++P+Q LA C+ ++
Sbjct: 972 CINL-TGLKKRDSVRERLLYAEEIMPDILDSADNPLTGRMWWAKSDEPWQTLACCMEIAN 1030
Query: 695 ALKSSSPHSVISHLPIHQDGSCNGLQHYAALGRNTLEAAAVNLVAGEKPADVYSEIAVRV 754
+ P + +S PIHQDGSCNGLQHYAALGR+ A +VNL P DVYS +A V
Sbjct: 1031 VHRCPDPTAYLSRFPIHQDGSCNGLQHYAALGRDEAGARSVNLAPSAIPQDVYSAVAALV 1090
Query: 755 HEIMKRDSNKDPSKHPQALLAKILIDQVDRKLVKQTVMTSVYGVTFVGAREQIKRRLEEK 814
+ K D+ +A+ L V RK++KQTVMT+VYGVT GAR QI R+L++
Sbjct: 1091 EKSRKTDAQNGLH------VAEALAGFVRRKVIKQTVMTTVYGVTRYGARLQIARQLKDI 1144
Query: 815 GHITDDRQLFAAACYAAKVTLTALGEIFEAARSIMGWLGDCAKVIASE-NQPVRWTTPLG 873
D ++ A+ Y T +L E+F + R I W +CA++I+ +Q V W TPLG
Sbjct: 1145 DDFPKD-WVWPASTYLTTKTFESLREMFTSTREIQDWFTECARLISGVCSQNVEWVTPLG 1203
Query: 874 LPVVQPYCKNE-RHLIRTSLQVLA-----LQREGNLVKIRKQRTAFPPNFVHSLDGSHMM 927
LPVVQPY + E +H R+ ++ A + N++ KQ+ AFPPNF+HSLD SHMM
Sbjct: 1204 LPVVQPYNRQEIKHSPRSGFRISANMPMDMYERPNIL---KQKNAFPPNFIHSLDSSHMM 1260
Query: 928 MTAVACRDAGLHFAGL 943
+T++ C G+ F +
Sbjct: 1261 LTSLHCERQGITFVSV 1276
>gi|147820783|emb|CAN65186.1| hypothetical protein VITISV_023905 [Vitis vinifera]
Length = 1312
Score = 357 bits (916), Expect = 2e-95, Method: Compositional matrix adjust.
Identities = 165/238 (69%), Positives = 202/238 (84%), Gaps = 1/238 (0%)
Query: 292 AIEQEIRIHSFLEKTKNYKRKKIIADTEEVLSKEKELLRKRVNSLIKSKRVMEAQKLLKN 351
+ +++RIHSFLEKTKN++R K + ++E L +EKE+LRKRV S I+ K+++E QKL+KN
Sbjct: 585 TVNEKVRIHSFLEKTKNFERHKTVGHSQEGL-REKEILRKRVKSFIRKKKIIEVQKLVKN 643
Query: 352 EETKPWGRDTQAKLGSRLVELLIETAYVQHPVNPADYSPPDVRPAFRHRFKTILKHPGQK 411
EE PWGRDTQAKLGSRL+ELL ETAYVQ PV + PPDVRPAFRH FKT+ K GQK
Sbjct: 644 EEITPWGRDTQAKLGSRLIELLTETAYVQTPVXQSADCPPDVRPAFRHTFKTVTKESGQK 703
Query: 412 TTKRYGVVECDPLVLEGLDRSAKHMLIPYVPMLVPPKKWKGYNKGGYLFLPSYVMRTHGS 471
++YGV+ECDPLVL GLDR+AKHM+IPYVPML+PPKKWKGY+KGGYLFLPSYVMRTHGS
Sbjct: 704 DWRKYGVIECDPLVLIGLDRTAKHMVIPYVPMLIPPKKWKGYDKGGYLFLPSYVMRTHGS 763
Query: 472 RKQQEALKSVTGNCMKKVFEALDTLGSTKWRVNKQVLSVLESIWVSGGNIAGLVDRND 529
RKQQ+A+KSV ++KVFEALDTLG+TKWR+N++VLSV+ESIW GGN+ GLVDR +
Sbjct: 764 RKQQDAVKSVPRRQLQKVFEALDTLGNTKWRINRRVLSVVESIWARGGNLGGLVDREN 821
Score = 237 bits (605), Expect = 2e-59, Method: Compositional matrix adjust.
Identities = 120/180 (66%), Positives = 143/180 (79%), Gaps = 10/180 (5%)
Query: 126 ENSTNHQLMCLEPRRRIFVQDPPWFSSIFLKGLYKR-------IKLQEYREMKKRKFNLL 178
++S+N Q+ E RIFVQDPPW SS +R +KL E+RE ++R + LL
Sbjct: 90 QDSSNIQVK--ESIPRIFVQDPPWISSFLFHDWCERNRRTGQNVKL-EFRETERRNYGLL 146
Query: 179 RRRQVKQETEAWERMVDEYKELEAKMIEKRLAPNLPHIKGLFLGWFGPLSEAIEREQKMQ 238
RRRQVK ETEAWERMV+EY+E+E +M EK+LAPNLP++K LFLGWF PL EAIE+EQ+ Q
Sbjct: 147 RRRQVKAETEAWERMVEEYREIEREMCEKKLAPNLPYVKALFLGWFEPLREAIEKEQRAQ 206
Query: 239 RTKKQKAAYAPHIELLPADKVAVIVMHKMMGLVMAGHEDRCVQVVQAAVHIGMAIEQEIR 298
RTKKQKAAYAPHIELLPADK+AVIVMHKMMGLVM GHE+ CV+VVQAAV IGMAIEQE +
Sbjct: 207 RTKKQKAAYAPHIELLPADKMAVIVMHKMMGLVMMGHEEGCVRVVQAAVQIGMAIEQEAK 266
>gi|383863127|ref|XP_003707034.1| PREDICTED: DNA-directed RNA polymerase, mitochondrial-like [Megachile
rotundata]
Length = 1152
Score = 357 bits (916), Expect = 2e-95, Method: Compositional matrix adjust.
Identities = 217/603 (35%), Positives = 324/603 (53%), Gaps = 45/603 (7%)
Query: 357 WGRDTQAKLGSRLVELLIETAYVQHPVNPADYSPPDVRPAFRHRFKTILKHPGQKTTKRY 416
W D +G L +++ + HP PAF F+ + ++
Sbjct: 496 WSLDVLINIGKFLYNIILNDI-ILHPNMLKGQDLKCSIPAFYTLFRNRENYLSEQ----- 549
Query: 417 GVVECDPLVLEGLDRSAKHMLIPY----VPMLVPPKKWKGYNKGGYLFLPSYVMRTHGSR 472
++ PLV L R +K ++ + +P PP+ W GGYL MR S
Sbjct: 550 --IKPHPLV-SKLYRDSKTRILTFDSHILPSHAPPRPWTSIYSGGYLMTKIDFMRL-PSD 605
Query: 473 KQQEALKSVTGNCMKKVFEALDTLGSTKWRVNKQVLSVLESIWVSGGNIAGLVDRNDVLI 532
L++ G + +F++L+ L S W VN +L + I+ +GG+ V R ++
Sbjct: 606 SPWHKLQNTPGKQLFPIFDSLNQLSSIPWMVNTDILDIAIKIFQNGGSEKLNVPRPISVL 665
Query: 533 PEKPLSEDMTEVQKWKWSVRKAKKINQERH---SQRCDTELKLSVARRMKDEEGFYYPHN 589
P ++ +Q+ + +V + Q+R+ S CD +LS+A ++++ F+ PHN
Sbjct: 666 SLPPSVKENATIQEKRSAVLALAQYKQKRYDMYSLWCDALYRLSIANHLRNK-VFWLPHN 724
Query: 590 LDFRGRAYPMHPHLNHLSSDVCRGVLEFAEGRPLGKSGLRWLKIHLANL--FSGGVEKLS 647
LDFRGR YP+ PHLNHLSSD+ R L FA G+PLG GL WLK+H+ NL F G S
Sbjct: 725 LDFRGRVYPVPPHLNHLSSDLGRSFLLFANGKPLGPDGLNWLKLHVINLTNFKKGS---S 781
Query: 648 HDGRLAFVENHLYEIFDSAENPINGSRWWLTAEDPFQCLAACINLSEALKSSSPHSVISH 707
RL + ++ I DSA P+ G WW AE+P+Q LA C+ ++ ALK+ + +S
Sbjct: 782 VQERLEYANQNMENILDSATKPLTGKMWWAEAEEPWQTLAGCMEIANALKTPNVEEYVSR 841
Query: 708 LPIHQDGSCNGLQHYAALGRNTLEAAAVNLVAGEKPADVYSEIAVRVHEIMKRDSNKDPS 767
P+HQDGSCNGLQHYAALGR+ + A +VNL + P DVY+ +A + + + D+ D
Sbjct: 842 FPVHQDGSCNGLQHYAALGRDQIGAESVNLYPFDVPNDVYTAVATIIEKQRQIDAKND-- 899
Query: 768 KHPQALLAKILIDQVDRKLVKQTVMTSVYGVTFVGAREQIKRRLEEKGHITD--DRQLFA 825
+A++L V RK++KQTVMT+VYGVT GA+ QI ++L +I D ++
Sbjct: 900 ----VKIAQLLEGFVKRKVIKQTVMTTVYGVTKYGAKHQIAKQLR---NIEDFPYEYVWP 952
Query: 826 AACYAAKVTLTALGEIFEAARSIMGWLGDCAKVIA---SENQPVRWTTPLGLPVVQPYCK 882
A+ Y A+ T +L +F++AR I WL CA++I+ EN V W TPLGLP+VQPY K
Sbjct: 953 ASIYLAESTFNSLRTMFKSAREIQDWLTTCARIISILYGEN--VEWVTPLGLPIVQPYIK 1010
Query: 883 NERHLIRTSL--QVLALQREGNLVKIRKQRTAFPPNFVHSLDGSHMMMTAVACRDAGLHF 940
+ H + VL + R V KQ+ AF PNF+HSLD HMM+T++ C + F
Sbjct: 1011 QKPHKMYMKFLRYVLHIYR----VDSMKQKNAFAPNFIHSLDSCHMMLTSLYCSQENVTF 1066
Query: 941 AGL 943
+
Sbjct: 1067 VSV 1069
>gi|321470970|gb|EFX81944.1| hypothetical protein DAPPUDRAFT_49577 [Daphnia pulex]
Length = 975
Score = 357 bits (916), Expect = 2e-95, Method: Compositional matrix adjust.
Identities = 200/503 (39%), Positives = 304/503 (60%), Gaps = 33/503 (6%)
Query: 450 WKGYNKGGYLFLPSYVMR--THGSRKQQEALKSVTGNCMKKVFEALDTLGSTKWRVNKQV 507
W + GGYL ++R H S KQ+ L + + +AL+ LGS WR+N +
Sbjct: 406 WSSHKCGGYLVTDVSLVRLPAHAS-KQRLRLANTPPQQLYPALDALNALGSIPWRINGSI 464
Query: 508 LSVLESIWVSGGNIAGLVDR--NDVLIPEKPLSEDMTEVQKWK-WSVRKA-KKINQERHS 563
L ++ I+ + G+ + + + + IP P++ + K K + R A K+ E +S
Sbjct: 465 LDLVTQIFNANGSKELHIPQPPSALAIP-SPVAAEADGSHKVKAYRDRIAFKRQKAEMYS 523
Query: 564 QRCDTELKLSVARRMKDEEGFYYPHNLDFR-GRAYPMHPHLNHLSSDVCRGVLEFAEGRP 622
CD+ +LS+A +D+ F+ PHN+DFR GR YP PHL HLS D+ R +L FA+G+P
Sbjct: 524 LWCDSLYRLSLANHFRDKV-FWLPHNMDFRLGRVYPCSPHLTHLSHDMARSLLFFAQGKP 582
Query: 623 LGKSGLRWLKIHLANLFSGGVEKLSHDGRLAFVENHLYEIFDSAENPINGSRWWLTAEDP 682
LG G WLK+H+ NL +G ++ R A+ E + EI DSA+NP+ G +WW+ +++P
Sbjct: 583 LGADGFNWLKLHVINL-TGTKKREPISERYAYAEKIMPEILDSADNPLTGRQWWVNSDEP 641
Query: 683 FQCLAACINLSEALKS-SSPHSVISHLPIHQDGSCNGLQHYAALGRNTLEAAAVNLVAGE 741
+Q LAAC+ ++ AL+ P + + HLPIHQDGSCNGLQHYAALGR+T+ A +VNL +
Sbjct: 642 WQTLAACMEVANALRCPDGPEAYVCHLPIHQDGSCNGLQHYAALGRDTVGAESVNLTPAD 701
Query: 742 KPADVYSEIAVRVHEIMKRDSNKDPSKHPQALLAKILIDQVDRKLVKQTVMTSVYGVTFV 801
+P DVYS +A +++R+ +KD + + + +A++L ++RK++KQTVMT+VYGVT
Sbjct: 702 RPQDVYSNVA----NLVERERSKDAANNVE--IAQLLAGLINRKIIKQTVMTTVYGVTRY 755
Query: 802 GAREQIKRRLEEKGHITDDRQLFAAACYAAKVTLTALGEIFEAARSIMGWLGDCAKVIAS 861
GAR QI ++L+E +T + Q+ + Y A T +L ++F +A+ I W + AK+I++
Sbjct: 756 GARLQIAKQLKELPSLTTE-QVQVGSVYLADKTFQSLQDMFTSAKDIQDWFTESAKLIST 814
Query: 862 -ENQPVRWTTPLGLPVVQPYCKNERHLIRTSLQVLALQREGNLVKIRKQRTAFPPNFVHS 920
+ V W TP+GLPVVQ Y N E + KQR AFPPNF+HS
Sbjct: 815 VAGESVEWITPIGLPVVQSYNNNPYD-------------EASRPNAIKQRNAFPPNFIHS 861
Query: 921 LDGSHMMMTAVACRDAGLHFAGL 943
LD SHMM+TA+ C+ G+ FA +
Sbjct: 862 LDSSHMMLTALYCQRKGITFASI 884
>gi|350395973|ref|XP_003484395.1| PREDICTED: DNA-directed RNA polymerase, mitochondrial-like [Bombus
impatiens]
Length = 1000
Score = 357 bits (916), Expect = 2e-95, Method: Compositional matrix adjust.
Identities = 209/573 (36%), Positives = 324/573 (56%), Gaps = 46/573 (8%)
Query: 388 YSPPDVRPAFRHRFKTILKH--PGQKTTKRYGVVECDPLVLEGLDRSAKHMLIPYVPMLV 445
YS P FR++ + + P +K Y V L + L +P
Sbjct: 371 YSIPAFYTLFRNKGNYLSEQIKPHPLVSKLYRKVHLKTLTFKSL----------LLPSYS 420
Query: 446 PPKKWKGYNKGGYLFLPSYVMRTHGS-RKQQEALKSVTGNCMKKVFEALDTLGSTKWRVN 504
PP W + GGYL + +R + ++ + +F++L+ L S W++N
Sbjct: 421 PPSPWVSIHLGGYLITKTDFIRISSDFDRLWHKFENTEPEQLFPIFDSLNQLSSIPWKIN 480
Query: 505 KQVLSVLESIWVSGGNIAGLVDRN-DVLIPEKPLSEDMTEVQKWKWSVRKAKKINQERH- 562
+L ++ I+ GG++ V ++ VLIP P++++ T +K K ++ A+ NQE++
Sbjct: 481 TAILDIVIKIFQDGGSVELNVPQSVSVLIPPGPINKNATVEEKQKAAIAIAQ-YNQEKYD 539
Query: 563 --SQRCDTELKLSVARRMKDEEGFYYPHNLDFRGRAYPMHPHLNHLSSDVCRGVLEFAEG 620
S CDT KLS+A +D+ F+ PHNLDFRGR YP+ P+LNHLSSD+ R +L F +G
Sbjct: 540 MYSLWCDTLYKLSIANHFRDK-IFWLPHNLDFRGRVYPVPPYLNHLSSDLGRSLLLFGKG 598
Query: 621 RPLGKSGLRWLKIHLANLF----SGGVEKLSHDGRLAFVENHLYEIFDSAENPINGSRWW 676
+PLG +GL WLK+H+ NL +G V++ RL + ++ I DSA P+ G WW
Sbjct: 599 KPLGPNGLDWLKLHVINLTNFKKAGSVKE-----RLEYANQNMDNILDSATKPLTGKMWW 653
Query: 677 LTAEDPFQCLAACINLSEALKSSSPHSVISHLPIHQDGSCNGLQHYAALGRNTLEAAAVN 736
+E P+Q LA C+ ++ ALK+ + +S P+HQDGSCNGLQHYAALG++ + A +VN
Sbjct: 654 KQSEAPWQTLAGCMEIANALKTPNVEEYVSSFPVHQDGSCNGLQHYAALGKDKIGAESVN 713
Query: 737 LVAGEKPADVYSEIAVRVHEIMKRDSNKDPSKHPQALLAKILIDQVDRKLVKQTVMTSVY 796
L + P DVYSE+ V + E ++ K+ K +A+IL V RK++KQTVMT+VY
Sbjct: 714 LHPFDTPKDVYSEV-VSIIETQRQIDAKNNVK-----IAQILEGYVKRKVIKQTVMTTVY 767
Query: 797 GVTFVGAREQIKRRLEEKGHITDDRQLFAAACYAAKVTLTALGEIFEAARSIMGWLGDCA 856
GVT GA+ QI ++L++ + + +++A+ Y + T +L ++F++AR I W +CA
Sbjct: 768 GVTKYGAKHQIAKQLKDMRNFPKE-HVWSASIYLTESTFHSLRKMFKSAREIQDWFTECA 826
Query: 857 KVIAS---ENQPVRWTTPLGLPVVQPYCKNERHLIRTSLQVLALQREGNLVKIR---KQR 910
++I+S EN V W TPLGLP++QPY K + + GN+ + KQR
Sbjct: 827 QIISSICCEN--VEWVTPLGLPIIQPYMKQKSLNNNINDNSNIF---GNVYRKPDRIKQR 881
Query: 911 TAFPPNFVHSLDGSHMMMTAVACRDAGLHFAGL 943
AF PNF+HSLD +HMM+T + C + F +
Sbjct: 882 NAFAPNFIHSLDSTHMMLTGLHCNKNNITFVSV 914
>gi|320170252|gb|EFW47151.1| T7 bacteriophage-type single subunit RNA polymerase [Capsaspora
owczarzaki ATCC 30864]
Length = 948
Score = 357 bits (916), Expect = 2e-95, Method: Compositional matrix adjust.
Identities = 247/717 (34%), Positives = 352/717 (49%), Gaps = 55/717 (7%)
Query: 240 TKKQKAAYAPHIELLPADKVAVIVMHKMMGLVMAGHEDRCVQVVQAAVHIGMAIEQEIRI 299
T YAP +E+L K+A I + + V+ R V AA HIG + +
Sbjct: 170 TNSPNPVYAPLLEVLSRRKLASIAISTLTREVVGSAGCRHVL---AASHIGRQVHMAYSL 226
Query: 300 HSFLEKTKNYKRKKIIADTEEVLSKEKE--LLRKRVNSLIKSKRVMEAQKL-LKNEETKP 356
+ R + A + ++K K+ + K V + K ++ + +K
Sbjct: 227 KRLGAGGNEFAR--LAASFPKFMAKFKKSAMPGKVVPDHVVWKTFIQHHLIGVKAVSVPD 284
Query: 357 WGRDTQAKLGSRLVELLIETAYVQHPVNPADYSPPDVRPAFRHRFKTILKHPGQKTTKRY 416
W DT +G L+ LI A ++ P D P H K + P + + +
Sbjct: 285 WSEDTFVAIGGALLSHLIAAAEIR----PGMADVVDFVPHVEHNRKVTMLCPNEHLVQFF 340
Query: 417 GVVECDPLVLEGLDRSAKHMLIPYVPMLVPPKKWKGYNKGGYLFLP----SYVMRTHGSR 472
V D R+ +PM+VPP W +N GGYL L S +MRT
Sbjct: 341 KVHPRDV-------RNQTFQFAKMLPMVVPPIPWISHNHGGYLLLSATGRSTLMRT--IH 391
Query: 473 KQQEALKSVTGNCMKKVFEALDTLGSTKWRVNKQVLSVLESIWVSGGNIA-GLVDRNDVL 531
Q + ++ N + VF+AL+ + +T+WRVN +VL++ +IW GG+ + D D+
Sbjct: 392 NDQRRILKLSQNRLGGVFDALNAIQTTEWRVNSRVLAIQIAIWNQGGDPELDIPDVKDIP 451
Query: 532 IPEKPLSEDMTE--VQKWKWSVRKAKKINQERHSQRCDTELKLSVARRMKDEEGFYYPHN 589
P +P D T + ++ + ++ ++ N+ HS RC + +L +A +++ Y P N
Sbjct: 452 EPRQPTGADATHTVMAEYFATRQQIREENRNMHSMRCTVQYQLLIAYKLRHNR-LYMPVN 510
Query: 590 LDFRGRAYPMHPHLNHLSSDVCRGVLEFAEGRPLGKSGLRWLKIHLANLFSGGVEKLSHD 649
LD+RGRAY + P+L HL D+ R L F + RPLG++GL WLK+HLANL G +K S
Sbjct: 511 LDWRGRAYTVSPNLTHLGGDMTRSTLMFHQRRPLGENGLFWLKVHLANLC--GADKCSLQ 568
Query: 650 GRLAFVENHLYEIFDSAENPI---NGSRWWLTAEDPFQCLAACINLSEALKSSSPHSVIS 706
R+ FV+++ I DSA +P+ G WW E+P+Q LAAC L A
Sbjct: 569 DRVKFVDSNWKHIIDSARDPLKERGGLGWWRQQENPWQALAACFELDAATSLPDHRLYEC 628
Query: 707 HLPIHQDGSCNGLQHYAALGRNTLEAAAVNLVAGEKPADVYSEIAVRVHEIMKRDSNKDP 766
LP+ DGSCNGLQHYAALG + L A VNL+ +P DVY +A V E + D
Sbjct: 629 GLPVQMDGSCNGLQHYAALGGDVLGALQVNLLPSPQPMDVYQAVATIVSE--RIDQLAAE 686
Query: 767 SKHPQALLAKILIDQVDRKLVKQTVMTSVYGVTFVGAREQIKRRLEEKGHITDDRQLFAA 826
H L + V RK+VKQTVMTSVYGVT VGA QI R+L H+ D+ Q
Sbjct: 687 GNHNAIRLKGL----VKRKIVKQTVMTSVYGVTVVGANAQIARQLAALPHL-DESQAHQL 741
Query: 827 ACYAAKVTLTALGEIFEAARSIMGWLGDCAKVIASENQPVRWTTPLGLPVVQPYCKNERH 886
A + A + AL +F A I WL A+ IA+ V+W TPL LPV+QPY K
Sbjct: 742 ATFLAPIVFEALSAMFAQATEIKTWLQVSARRIAASGDYVKWETPLNLPVLQPYIK---- 797
Query: 887 LIRTSLQVLALQREGNLVKIRKQRTAFPPNFVHSLDGSHMMMTAVACRDAGLHFAGL 943
L ++ +K TAFPPNFVHSLD +HMMMTA L FA +
Sbjct: 798 ----------LSHGVKVIDRQKHATAFPPNFVHSLDATHMMMTASEAHRQNLVFASV 844
>gi|410949947|ref|XP_003981678.1| PREDICTED: DNA-directed RNA polymerase, mitochondrial [Felis catus]
Length = 875
Score = 356 bits (914), Expect = 3e-95, Method: Compositional matrix adjust.
Identities = 180/418 (43%), Positives = 259/418 (61%), Gaps = 18/418 (4%)
Query: 533 PEKPLSEDMTEVQK--WKWSVRKAKKINQERHSQRCDTELKLSVARRMKDEEGFYYPHNL 590
PE L D + QK + + + K+ +E HS R D +LS+A+ ++ F+ PHN+
Sbjct: 383 PEGRLPPDASPAQKAELRRELARCLKVAREMHSLRSDALYRLSLAQHLRHRV-FWLPHNM 441
Query: 591 DFRGRAYPMHPHLNHLSSDVCRGVLEFAEGRPLGKSGLRWLKIHLANLFSGGVEKLSHDG 650
DFRGR YP PH NHL SD+ R +LEFA+GRPLG GL WLK+HL NL +G ++
Sbjct: 442 DFRGRTYPCPPHFNHLGSDLARALLEFAQGRPLGPRGLDWLKVHLVNL-TGLKKREPLQA 500
Query: 651 RLAFVENHLYEIFDSAENPINGSRWWLTAEDPFQCLAACINLSEALKSSSPHSVISHLPI 710
RL F + + +I DSA+ P+ G +WW+ E+P+Q LA C+ ++ A+++ P + ISH P+
Sbjct: 501 RLVFADEVMEDILDSADRPMTGRKWWMEVEEPWQALACCMEIARAVRAPDPAAYISHFPV 560
Query: 711 HQDGSCNGLQHYAALGRNTLEAAAVNLVAGEKPADVYSEIAVRVHEIMKRDSNKDPSKHP 770
HQDGSCNGLQHYAALGR+++ AA+VNL+ + P DVYS +A +V +D+ +
Sbjct: 561 HQDGSCNGLQHYAALGRDSIGAASVNLLPSDVPQDVYSGVAAQVEVFRSQDAKRG----- 615
Query: 771 QALLAKILIDQVDRKLVKQTVMTSVYGVTFVGAREQIKRRLEEKGHITDDRQLFA--AAC 828
+A++L + RK+VKQTVMT VYGVT G R QI+RRL E ++D Q F A+
Sbjct: 616 -VRVAQVLEGFISRKVVKQTVMTVVYGVTRYGGRLQIERRLRE---LSDFPQEFVWEASH 671
Query: 829 YAAKVTLTALGEIFEAARSIMGWLGDCAKVIASENQPVRWTTPLGLPVVQPYCKNERHLI 888
Y + +L E+F R+I WL + A++IA V W TPLG+P++QPY ++ + +I
Sbjct: 672 YLVRQVFNSLQEMFSGTRAIQHWLTESARLIAHAGSAVEWVTPLGIPIIQPYHRDSKVMI 731
Query: 889 RTSLQVLALQREGNLVK---IRKQRTAFPPNFVHSLDGSHMMMTAVACRDAGLHFAGL 943
+Q L G+ + KQ+ FPPNF+HSLD SHMM+TA+ C GL F +
Sbjct: 732 SGGIQSLTFSHSGDTSQRPNTLKQKNGFPPNFIHSLDSSHMMLTALHCYRKGLTFVSV 789
>gi|340730181|ref|XP_003403364.1| PREDICTED: LOW QUALITY PROTEIN: DNA-directed RNA polymerase,
mitochondrial-like [Bombus terrestris]
Length = 1248
Score = 355 bits (910), Expect = 9e-95, Method: Compositional matrix adjust.
Identities = 208/600 (34%), Positives = 333/600 (55%), Gaps = 44/600 (7%)
Query: 357 WGRDTQAKLGSRLVELLIETAYVQHPV---NPADYSPPDVRPAFRHRFKTILKH--PGQK 411
W +D +G + +++ ++ + YS P FR++ + + P
Sbjct: 594 WPQDVIINIGKFMYHIILNDIMLKPEMLKGQDLKYSIPAFYTLFRNKGTYLSEQIKPHPL 653
Query: 412 TTKRYGVVECDPLVLEGLDRSAKHMLIPYVPMLVPPKKWKGYNKGGYLFLPSYVMR-THG 470
+K Y + + L E L +P PP W GGYL + +R +
Sbjct: 654 VSKLYREIHLETLTFESL----------LLPSCSPPSPWVSIYLGGYLITNTDFIRISSD 703
Query: 471 SRKQQEALKSVTGNCMKKVFEALDTLGSTKWRVNKQVLSVLESIWVSGGNIAGLVDRN-D 529
++ + +F++L+ L S W++N +L ++ I+ GG++ V ++
Sbjct: 704 CSVLWHKFENTKPEQLFPIFDSLNQLSSIPWKINTAILDIVIKIFQDGGSVELNVPQSVS 763
Query: 530 VLIPEKPLSEDMTEVQKWKWSVRKAKKINQERH---SQRCDTELKLSVARRMKDEEGFYY 586
L P P++++ T +K K ++ A+ NQ+++ S CDT KLS+A +++ F+
Sbjct: 764 ALTPPNPINKNATVEEKQKAAIAIAQ-YNQKKYDMYSLWCDTLYKLSIANHFRNK-IFWL 821
Query: 587 PHNLDFRGRAYPMHPHLNHLSSDVCRGVLEFAEGRPLGKSGLRWLKIHLANLFSGGVEKL 646
PHNLDFRGR YP+ P+LNHLSSD+ R +L F +G+PLG +GL WLK+H+ NL + +
Sbjct: 822 PHNLDFRGRVYPVPPYLNHLSSDLGRSLLLFGKGKPLGPNGLDWLKLHIINL-TNFKKAD 880
Query: 647 SHDGRLAFVENHLYEIFDSAENPINGSRWWLTAEDPFQCLAACINLSEALKSSSPHSVIS 706
S RL + ++ I DSA P+ G WW +E+P+Q LA C+ ++ ALK+ + IS
Sbjct: 881 SVKERLEYANQNMDNILDSATKPLTGKMWWKQSEEPWQTLAGCMEIANALKAPNVEEYIS 940
Query: 707 HLPIHQDGSCNGLQHYAALGRNTLEAAAVNLVAGEKPADVYSEIAVRVHEIMKRDSNKDP 766
P+HQDGSCNGLQHYAALG++ + A +VNL + P DVYSE+ V + E ++ K+
Sbjct: 941 TFPVHQDGSCNGLQHYAALGKDKIGAESVNLHPFDTPKDVYSEV-VSIIETQRQIDAKNN 999
Query: 767 SKHPQALLAKILIDQVDRKLVKQTVMTSVYGVTFVGAREQIKRRLEEKGHITDDRQLFAA 826
K +A+IL V RK++KQTVMT+VYGVT GA+ QI ++L++ + + ++ A
Sbjct: 1000 VK-----IAQILEGYVKRKVIKQTVMTTVYGVTKYGAKIQIIKQLKDMENFPKE-HIWPA 1053
Query: 827 ACYAAKVTLTALGEIFEAARSIMGWLGDCAKVIAS---ENQPVRWTTPLGLPVVQPYCKN 883
Y + T +L ++F++AR I W CA++I+S EN V W TPLGLP+VQPY K
Sbjct: 1054 GVYLTESTFHSLRQMFKSAREIQDWFTACAQIISSICCEN--VEWITPLGLPIVQPYMKQ 1111
Query: 884 ERHLIRTSLQVLALQREGNLVKIRKQRTAFPPNFVHSLDGSHMMMTAVACRDAGLHFAGL 943
++S +++++ + KQR AF PNF+HSLD +HMM+T + C + F +
Sbjct: 1112 -----KSSKDYISVRKPDTI----KQRNAFAPNFIHSLDSTHMMLTGLNCNKNNITFVSV 1162
>gi|147843606|emb|CAN79881.1| hypothetical protein VITISV_017990 [Vitis vinifera]
Length = 305
Score = 352 bits (903), Expect = 6e-94, Method: Compositional matrix adjust.
Identities = 166/197 (84%), Positives = 182/197 (92%)
Query: 747 YSEIAVRVHEIMKRDSNKDPSKHPQALLAKILIDQVDRKLVKQTVMTSVYGVTFVGAREQ 806
+S I +VHEIMKRDSNKDP+ P+ALLAK+LI QVDRKLVKQTVMTSVYGVT++GAREQ
Sbjct: 40 HSSICTKVHEIMKRDSNKDPATDPKALLAKVLIGQVDRKLVKQTVMTSVYGVTYIGAREQ 99
Query: 807 IKRRLEEKGHITDDRQLFAAACYAAKVTLTALGEIFEAARSIMGWLGDCAKVIASENQPV 866
IKRRL EKG ITD+R LF AACYAAKVTL ALGEIF+AAR IM WLG+CAKVIASENQPV
Sbjct: 100 IKRRLAEKGLITDERLLFTAACYAAKVTLAALGEIFQAARDIMAWLGECAKVIASENQPV 159
Query: 867 RWTTPLGLPVVQPYCKNERHLIRTSLQVLALQREGNLVKIRKQRTAFPPNFVHSLDGSHM 926
+WTTPLGLPV+QPYCK+ERHLIRTSLQVLALQREG++V IRKQRTAFPPNFVHSLDGSHM
Sbjct: 160 QWTTPLGLPVIQPYCKSERHLIRTSLQVLALQREGSVVVIRKQRTAFPPNFVHSLDGSHM 219
Query: 927 MMTAVACRDAGLHFAGL 943
MMTAVACRDAGL FAG+
Sbjct: 220 MMTAVACRDAGLCFAGV 236
>gi|307214460|gb|EFN89497.1| DNA-directed RNA polymerase, mitochondrial [Harpegnathos saltator]
Length = 1166
Score = 350 bits (898), Expect = 2e-93, Method: Compositional matrix adjust.
Identities = 209/595 (35%), Positives = 307/595 (51%), Gaps = 71/595 (11%)
Query: 357 WGRDTQAKLGSRLVELLIETAYVQHPVNPADYSPPDVRPAF------RHRFKTILKHPGQ 410
W R +G L +++ + + + P +P + PAF +H + T P
Sbjct: 550 WPRHILVNIGKFLYSIIVNDVKIPYGIKPG--APERLIPAFYLLFRNQHAYLTEEIKPHP 607
Query: 411 KTTKRYGVVECDPLVLEGLDRSAKHMLIPYVPMLVPPKKWKGYNKGGYLFLPSYVMRTHG 470
+ + + L E + +P +PP+ W N GG+LF + +R
Sbjct: 608 HLHRTFSESHPETLTFETV----------LLPTYIPPRPWINTNIGGFLFSKTDFIRDPY 657
Query: 471 SRKQQEALKSVTGNCMKKVFEALDTLGSTKWRVNKQVLSV-LESIWVSGGNIAGLVDRND 529
+E GS + V + LS S W+
Sbjct: 658 VGIFREG-------------------GSEELNVPQSPLSFPFLSEWM------------- 685
Query: 530 VLIPEKPLSEDMTEVQKWKWSVRKAKKINQERHSQRCDTELKLSVARRMKDEEGFYYPHN 589
K L+E K + ++ E +S CD KLS+A +D+ F+ PHN
Sbjct: 686 -----KELAEKEKSRSKISTLAIQHRRKKNEMYSLWCDCLYKLSLANHFRDQ-VFWLPHN 739
Query: 590 LDFRGRAYPMHPHLNHLSSDVCRGVLEFAEGRPLGKSGLRWLKIHLANLFSGGVEKLSHD 649
LDFRGRAYP+ PHL HL+SD+ R L FA+ +PLG GL WLKIH NL +G ++
Sbjct: 740 LDFRGRAYPVAPHLTHLTSDLGRSFLVFAQKKPLGPKGLDWLKIHAINL-TGMKKREPMK 798
Query: 650 GRLAFVENHLYEIFDSAENPINGSRWWLTAEDPFQCLAACINLSEALKSSSPHSVISHLP 709
RL F L I DSA NP+ G RWW +++P+Q LAAC + AL+S +P ++ P
Sbjct: 799 KRLEFANEILDLIIDSARNPLKGKRWWTESDEPWQTLAACKEIDNALQSPNPEEYLTGFP 858
Query: 710 IHQDGSCNGLQHYAALGRNTLEAAAVNLVAGEKPADVYSEIAVRVHEIMKRDSNKDPSKH 769
+HQDGSCNGLQHYAALGR+ + A +VNL + P DVYS + V E K+D+
Sbjct: 859 VHQDGSCNGLQHYAALGRDQIGAESVNLYPSDTPQDVYSVVVGMVEEFRKKDAENGVE-- 916
Query: 770 PQALLAKILIDQVDRKLVKQTVMTSVYGVTFVGAREQIKRRLEEKGHITDDRQLFAAACY 829
+AK+L + RK++KQT+MT+VYGVT GA+ QI R+L + + ++ + Y
Sbjct: 917 ----IAKVLEGHISRKVIKQTIMTTVYGVTKFGAKLQITRQLSDMKDFPQEY-IWNGSMY 971
Query: 830 AAKVTLTALGEIFEAARSIMGWLGDCAKVIASE-NQPVRWTTPLGLPVVQPYCKNERHLI 888
+ T +L +F +A+ I W DCA+VI++ NQ V+W TPLGLPV+QPY N+R
Sbjct: 972 LVQQTFRSLQTMFTSAKEIQDWFTDCARVISTRCNQYVQWVTPLGLPVLQPY--NKRFKT 1029
Query: 889 RTSLQVLALQREGNLVKIRKQRTAFPPNFVHSLDGSHMMMTAVACRDAGLHFAGL 943
T+ V +Q++ + + KQ+ AFPPNF+HSLD HMM+T++ C AG+ F +
Sbjct: 1030 TTATNVSKIQKKPDTM---KQKNAFPPNFIHSLDSCHMMLTSLHCEQAGITFMSV 1081
>gi|332850851|ref|XP_003316023.1| PREDICTED: DNA-directed RNA polymerase, mitochondrial [Pan
troglodytes]
Length = 1273
Score = 348 bits (894), Expect = 6e-93, Method: Compositional matrix adjust.
Identities = 230/666 (34%), Positives = 346/666 (51%), Gaps = 61/666 (9%)
Query: 293 IEQEIRIHSFLEKTKNYKRKKIIADTEEVLSKEKELLRKRVNSLIKSKRVMEAQKLLKNE 352
+ Q R+ ++ +N+ RK + + E L R+ +L + + E
Sbjct: 624 VVQRQRVSGQVQALQNHYRKYLCLLASDAEVPEPCLPRQYWEALGAPEALRE-------- 675
Query: 353 ETKPWGRDTQAKLGSRLVELLIETAYVQHPVNPADYSPPDVRPAFRHRFKTILKHPGQ-K 411
+PW Q +LG L E+L++ + ++ +P R +L H +
Sbjct: 676 --QPWPLPVQMELGKLLAEMLVQATQMPCSLD---------KPHRSSRLVPVLYHVYSFR 724
Query: 412 TTKRYGVVECDPLVLEGLDRSAKHMLI---PYVPMLVPPKKWKGYNKGGYLFLPSYVMRT 468
++ G+++ P ++ L+++A+ L VPML PP W + G +L P+ +MRT
Sbjct: 725 NVQQIGILKPHPAYVQLLEKAAEPTLTFEAVDVPMLCPPLPWTSPHSGAFLLSPTKLMRT 784
Query: 469 -HGSRKQQEALKSVTGNCMKKVFEALDTLGSTKWRVNKQVLSVLESIWVSGGNIAGLVDR 527
G+ + QE L++ + +AL LG+ WRVN +VL ++ ++ + G V
Sbjct: 785 VEGATQHQELLETCPPTALHGALDALTQLGNCAWRVNGRVLDLVLQLFQAKGCPQLGVPA 844
Query: 528 NDVLIPEKP---LSEDMTEVQK--WKWSVRKAKKINQERHSQRCDTELKLSVARRMKDEE 582
P+ P L +K + V +K+ +E HS R + +LS+A+ ++D
Sbjct: 845 PPSEAPQPPEAHLPHSAAPARKAELRREVVHCQKVAREMHSLRAEALYRLSLAQHLRDRV 904
Query: 583 GFYYPHNLDFRGRAYPMHPHLNHLSSDVCRGVLEFAEGRPLGKSGLRWLKIHLANLFSGG 642
F+ PHN+DFRGR YP PH NHL SDV R +LEFA+GRPLG GL WLKIHL NL +G
Sbjct: 905 -FWLPHNMDFRGRTYPCPPHFNHLGSDVARALLEFAQGRPLGPHGLDWLKIHLVNL-TGL 962
Query: 643 VEKLSHDGRLAFVENHLYEIFDSAENPINGSRWWLTAEDPFQCLAACINLSEALKS---S 699
++ RLAF E + I DSA+ P+ A P C L A
Sbjct: 963 KKREPLRKRLAFAEEVMDHILDSADQPLT------RAGAPVHLAGGCTALGTARPGGWFG 1016
Query: 700 SPH-----SVISHL-PIHQDGSCNGLQHYAALGRNTLEAAAVNLVAGEKPADVYSEIAVR 753
PH IS L P+ QDGSCNGLQHYAALGR+++ AA+VNL + P DVYS +A +
Sbjct: 1017 VPHVSASLGSISRLPPLPQDGSCNGLQHYAALGRDSVGAASVNLEPSDVPQDVYSGVAAQ 1076
Query: 754 VHEIMKRDSNKDPSKHPQALLAKILIDQVDRKLVKQTVMTSVYGVTFVGAREQIKRRLEE 813
V ++D+ + +A++L + RK+VKQTVMT VYGVT G R QI++RL E
Sbjct: 1077 VEVFRRQDAQRG------MRVAQVLEGFITRKVVKQTVMTVVYGVTRYGGRLQIEKRLRE 1130
Query: 814 KGHITDDRQLFA--AACYAAKVTLTALGEIFEAARSIMGWLGDCAKVIASENQPVRWTTP 871
++D Q F A+ Y + +L E+F R+I WL + A++I+ V W TP
Sbjct: 1131 ---LSDFPQEFVWEASHYLVRQVFKSLQEMFSGTRAIQHWLTESARLISHMGSVVEWVTP 1187
Query: 872 LGLPVVQPY-CKNERHLIRTSLQVLALQREGNLVK---IRKQRTAFPPNFVHSLDGSHMM 927
LG+PV+QPY ++ I +Q + G++ + RKQ+ FPPNF+HSLD SHMM
Sbjct: 1188 LGVPVIQPYRLDSKVKQIGGGIQSITYTHNGDISRKPNTRKQKNGFPPNFIHSLDSSHMM 1247
Query: 928 MTAVAC 933
+TA+ C
Sbjct: 1248 LTALHC 1253
Score = 138 bits (347), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 78/197 (39%), Positives = 112/197 (56%), Gaps = 43/197 (21%)
Query: 673 SRWWLTAEDPFQCLAACINLSEALKSSSPHSVISHLPIHQDGSCNGLQHYAALGRNTLEA 732
+ WW+ AE+P+Q LA C+ ++ A+++S P + +SHLP+HQDGSCNGLQHYAALGR+++ A
Sbjct: 428 THWWMGAEEPWQTLACCMEVANAVRASDPAAYVSHLPVHQDGSCNGLQHYAALGRDSVGA 487
Query: 733 AAVNLVAGEKPADVYSEIAVRVH---------------------------EIMKRDSNKD 765
A+VNL + P DVYS +A +V E+ +R +
Sbjct: 488 ASVNLEPSDVPQDVYSGVAAQVECALLPGGISAWGQSGLTRAPRPPAVQVEVFRRQDAQR 547
Query: 766 PSKHPQALLAKILIDQVDRKLVKQTVMTSVYGVTFVGAREQIKRRLEEKGHITDDRQLFA 825
+ +A++L + RK+VKQTVMT VYGVT G R QI++RL E ++D Q+
Sbjct: 548 GMR-----VAQVLEGFITRKVVKQTVMTVVYGVTRYGGRLQIEKRLRE---LSDFPQILQ 599
Query: 826 AACYAAKVTLTALGEIF 842
TL A GE F
Sbjct: 600 --------TLPAQGESF 608
>gi|26325937|dbj|BAB22998.2| unnamed protein product [Mus musculus]
Length = 462
Score = 348 bits (893), Expect = 9e-93, Method: Compositional matrix adjust.
Identities = 176/378 (46%), Positives = 244/378 (64%), Gaps = 16/378 (4%)
Query: 571 KLSVARRMKDEEGFYYPHNLDFRGRAYPMHPHLNHLSSDVCRGVLEFAEGRPLGKSGLRW 630
+LS+A ++ F+ PHN+DFRGR YP PH NHL SD+ R +LEFAEGRPLG GL W
Sbjct: 8 RLSLAHDLR-HRVFWLPHNMDFRGRTYPCPPHFNHLGSDLARALLEFAEGRPLGPRGLDW 66
Query: 631 LKIHLANLFSGGVEKLSHDGRLAFVENHLYEIFDSAENPINGSRWWLTAEDPFQCLAACI 690
LKIHL NL +G + S RLAF + + EI DSA+NP+ G +WW+ A++P+Q LA C+
Sbjct: 67 LKIHLINL-TGLKKGDSLRMRLAFADEVMEEILDSADNPLTGRKWWMEADEPWQTLACCM 125
Query: 691 NLSEALKSSSPHSVISHLPIHQDGSCNGLQHYAALGRNTLEAAAVNLVAGEKPADVYSEI 750
++ A++S P + ISHLP+HQDGSCNGLQHYAALGR+++ AA+VNL + P DVY E+
Sbjct: 126 EVAHAVRSPDPAAYISHLPVHQDGSCNGLQHYAALGRDSVGAASVNLTPSDLPQDVYREV 185
Query: 751 AVRVHEIMKRDSNKDPSKHPQALLAKILIDQVDRKLVKQTVMTSVYGVTFVGAREQIKRR 810
A +V E ++D+ + +A++L + RK+VKQTVMT VYGVT G R QI++R
Sbjct: 186 ATQVEEFRQQDAKEG------LRVAQVLEGFISRKVVKQTVMTVVYGVTRYGGRLQIEKR 239
Query: 811 LEEKGHITDDRQLFA--AACYAAKVTLTALGEIFEAARSIMGWLGDCAKVIASENQPVRW 868
L E ++D Q F A+ Y + +L E+F + R+I WL + A +I+ PV W
Sbjct: 240 LRE---LSDFPQEFVWEASHYLVRQVFKSLQEMFTSTRAIQHWLTESANLISHAGWPVEW 296
Query: 869 TTPLGLPVVQPYCKNERHLIRTSLQVLALQR---EGNLVKIRKQRTAFPPNFVHSLDGSH 925
TPLG+P++QPY + + ++ LQ + L E KQ+ FPPNF+HSLD SH
Sbjct: 297 VTPLGIPIIQPYHRESKVQVKGGLQSITLTSSVDESQKPNTLKQKKGFPPNFIHSLDSSH 356
Query: 926 MMMTAVACRDAGLHFAGL 943
MM+TA+ C GL F +
Sbjct: 357 MMLTALHCYRKGLIFVSV 374
>gi|156088049|ref|XP_001611431.1| DNA-dependent RNA polymerase [Babesia bovis T2Bo]
gi|154798685|gb|EDO07863.1| DNA-dependent RNA polymerase, putative [Babesia bovis]
Length = 1088
Score = 348 bits (892), Expect = 1e-92, Method: Compositional matrix adjust.
Identities = 217/644 (33%), Positives = 321/644 (49%), Gaps = 71/644 (11%)
Query: 351 NEETKPWGRDTQAKLGSRLVELLIETAYVQHPVNPA-------------------DYSPP 391
++ K W A +G L+ L+E+ YVQ + A + + P
Sbjct: 395 TDDQKQWNSKQSAAVGGYLLHALVESCYVQVDLTTALRQTNSFAELDASMLIPDLNNADP 454
Query: 392 DVRPAFRHRFKTILKHPGQK-------------------TTKRYGVVECDPLVLEGL-DR 431
D RH K + Q K YGV+E + L D
Sbjct: 455 DSTKKKRHWLKKTVSRIRQSRFDASKVEIAAFAHKVHRHGVKVYGVLEMRECCMIHLRDA 514
Query: 432 SAKHML-IPYVPMLVPPKKWKGYNKGGYLFLPSYVMRTHGSRKQQEALKSVTGNCMKKVF 490
A+ ++ + +PM+ PK W GG L Y +RT Q V + +V
Sbjct: 515 VARGLVNLSCLPMVCEPKPWTSVASGGLALLKHYFIRT-----QCRPTYDVRVYDLSRVL 569
Query: 491 EALDTLGSTKWRVNKQVLSVLESIWVSGGNIAGLVDRNDVLIPEKPLSEDMTEVQKWKWS 550
+ + G W++N VL VL+ +W D ++P + D T V+ +
Sbjct: 570 KVATSFGKVPWKINGNVLQVLQKLW-----------ETDAVLPVRSFLPDKTLVEADPST 618
Query: 551 VRKAKKINQERHSQRCDT-ELKLSVARRMKDEEGFYYPHNLDFRGRAYPMHPHLNHLSSD 609
+ +++ C E +L VA E Y+P N+DFRGR YP+ PHLNH++ D
Sbjct: 619 L--VNVMDRANALSECSLFERRLRVASDFLMEPRIYFPQNIDFRGRMYPLSPHLNHMADD 676
Query: 610 VCRGVLEFAEGRPLGKSGLRWLKIHLANLFSGGVEKLSHDGRLAFVENHLYEIFDSAENP 669
VCRG+L+FA+ +PLG+ G WLK+H++NL+ G++K+ R+A+VE + I +P
Sbjct: 677 VCRGLLKFADKKPLGERGFFWLKVHISNLY--GIDKVPLAERVAWVEKNTNMIQQLVADP 734
Query: 670 IN--GSRWWLTAEDPFQCLAACINLSEALKSSSPHSVISHLPIHQDGSCNGLQHYAALGR 727
+W E PFQ AA ++ AL+S +P+S S +P+HQDGSCNGLQHYAALGR
Sbjct: 735 FAELSQSFWRRVESPFQFYAASVDYVAALRSGNPYSYQSDIPVHQDGSCNGLQHYAALGR 794
Query: 728 NTLEAAAVNLVAGEKPADVYSEIAVRVHEIMKRDSNKDPSKHP---QALLAKILIDQ--V 782
+ AAVNL+ E+P DVY ++ + V ++ D S P ++ +AK+ ++ +
Sbjct: 795 DLSGGAAVNLIPDERPQDVYQQVLLEVIAKVRTDYQCTASIEPISKRSFMAKLCLEHGIL 854
Query: 783 DRKLVKQTVMTSVYGVTFVGAREQIKRRLEEKGHITD--DRQLFAAACYAAKVTLTALGE 840
RK+VKQTVMT YGVT GA QI+ RL+E I ++Q+ A Y A L ++
Sbjct: 855 RRKIVKQTVMTICYGVTRTGAVSQIEARLKEIDTIASMGNQQVKQLASYIAGKVLGSIKT 914
Query: 841 IFEAARSIMGWLGDCAKVIASENQPVRWTTPLGLPVVQPYCKNERHLIRTSLQVLALQRE 900
+F A I WL D + N PV W +P+GLP QPYCK ++RT +Q + +
Sbjct: 915 VFAEAMGIKKWLDDISAAHNRLNVPVTWISPIGLPCEQPYCKAVTKVVRTPIQAINISEN 974
Query: 901 G-NLVKIRKQRTAFPPNFVHSLDGSHMMMTAVACRDAGLHFAGL 943
++V RKQ+ AFPPNFVHSLD SH+M+TA G FA +
Sbjct: 975 APSVVDKRKQKLAFPPNFVHSLDASHLMLTAEVLFRDGFSFAAV 1018
>gi|358334198|dbj|GAA52636.1| DNA-directed RNA polymerase mitochondrial [Clonorchis sinensis]
Length = 1130
Score = 347 bits (889), Expect = 2e-92, Method: Compositional matrix adjust.
Identities = 213/556 (38%), Positives = 296/556 (53%), Gaps = 68/556 (12%)
Query: 441 VPMLVPPKKWKGYNKGGYLFLPSYVMR----THGSRKQQEALKSVTGNCMKK---VFEAL 493
+PML PP W + GYL +Y R T S + AL K+ V +AL
Sbjct: 500 LPMLCPPVPWTDLHDAGYLVSRNYATRLMRQTRASPVAEPALDDDLDFDAKRIPSVLDAL 559
Query: 494 DTLGSTKWRVNKQVLSVLESIWVSGGNIAGLVDRNDVLIPE-------KPLSEDMT---- 542
+ L S WRVN+ +L+ L + +GGN + IPE PLS T
Sbjct: 560 NCLASCPWRVNEPILNALIKVARAGGN-------RKLSIPEIVRQTMPSPLSITNTMSYE 612
Query: 543 EVQKWKWSVRKAKKINQERHSQRCDTELKLSVARRMKDEEGFYYPHNLDFRGRAYPMHPH 602
E + R+A+K E S +LS+A + + F++PH++DFRGR YP PH
Sbjct: 613 ERRAADRQAREAQKQYDEMRSLWATELYRLSIANQYRGRV-FWFPHSMDFRGRVYPCPPH 671
Query: 603 LNHLSSDVCRGVLEFAEGRPLGKSGLRWLKIHLANLFSGGVEKLSHDGRLAFVENHLYEI 662
+H+ SDV RG++ FA+G PLG+ GL WLKIHL NL +G ++ S+ RL F E L ++
Sbjct: 672 FHHMGSDVSRGLIVFAKGLPLGEHGLDWLKIHLVNL-TGLKKRCSNRDRLKFAEQLLDDV 730
Query: 663 FDSAENPINGSRWWLTAEDPFQCLAACINLSEALK-SSSPHSVISHLPIHQDGSCNGLQH 721
DSA NP NG RWW E+P+Q LA C L A++ S PH+ +SH P+HQDGSCNGLQH
Sbjct: 731 LDSARNPFNGRRWWQEQEEPWQVLACCKELMAAMEHPSGPHNYVSHFPVHQDGSCNGLQH 790
Query: 722 YAALGRNTLEAAAVNLVAGEKPADVYSEIAVRVHEIMKRDSNKDPSKHPQALLAKILIDQ 781
YAALGR+ A +VNL A ++P DVYS++A E+++ D + +AK+L
Sbjct: 791 YAALGRDCRGAESVNLTARDQPQDVYSDVA----EVVEAQRQADAAA--GIPVAKVLEGF 844
Query: 782 VDRKLVKQTVMTSVYGVTFVGAREQIKRRLEEKGHITDDRQLFAAACYAAKVTLTALGEI 841
V RK++KQ+VMT+VYGVT GA EQI+R+L + + A Y A++TL ++G I
Sbjct: 845 VRRKVIKQSVMTTVYGVTLYGASEQIRRQLRDLEDFPGREWIGPAGTYLARLTLASIGAI 904
Query: 842 FEAARSIMGWLGDCAKVIASE-NQPVRWTTPLGLPVVQPYCKNERHLIR----------- 889
F ++ I W G A+ I+ V W TPLGLPV QPY L
Sbjct: 905 FTSSTEIQAWFGQIAQHISRHLGNRVSWETPLGLPVTQPYMTLPSALTTDRFSEFTPSSP 964
Query: 890 -----------TSLQVLALQREGNLV-----------KIRKQRTAFPPNFVHSLDGSHMM 927
++++V + R + KQ+ AFPPNF+HSLD HMM
Sbjct: 965 FSPPSPTLLGASAMEVASRVRHNYAIHNANYKELPVPNPVKQQNAFPPNFIHSLDSCHMM 1024
Query: 928 MTAVACRDAGLHFAGL 943
+TA+ C G+ FA +
Sbjct: 1025 LTALHCFREGITFASV 1040
>gi|294948962|ref|XP_002785982.1| conserved hypothetical protein [Perkinsus marinus ATCC 50983]
gi|239900090|gb|EER17778.1| conserved hypothetical protein [Perkinsus marinus ATCC 50983]
Length = 1162
Score = 347 bits (889), Expect = 3e-92, Method: Compositional matrix adjust.
Identities = 218/581 (37%), Positives = 321/581 (55%), Gaps = 47/581 (8%)
Query: 396 AFRHRF-KTILKHPGQKTTKRYGVVECDPLVLEG---------LDRSAKHMLIPYV-PML 444
AFRHR + K G+ ++ V D L+ G L+ S H+L + P++
Sbjct: 525 AFRHRLVRRQSKIQGELCLRK---VAADALLRTGNGSSSSSSRLEGSPAHLLATKLQPLV 581
Query: 445 VPPKKWKGYNKGGYLFLPSYVMRTHGSRKQQEALKSVTGNCMKKVFEALDTLGSTKWRVN 504
P W+G+ +GGYL + +R GSR ++ V + +V LD LGST +++N
Sbjct: 582 CKPNPWQGFWEGGYLTHRTPFIRFTGSRITSRDIRHVD---LTRVQRILDYLGSTPFKIN 638
Query: 505 KQVLSVLESIWVSGGNIAGLVDRNDVLIPEKPLS-EDMTE--VQKWKWSVRKAKKINQER 561
++VL V+E +W I + R D+ IP P E +TE ++ K +V KA K N++
Sbjct: 639 EKVLDVVEEVWRQDLRIGDIPPRADLDIPNLPGEKEGLTEKAMKSAKLAVMKAYKDNEKL 698
Query: 562 HSQRCDTELKLSVARRMKD-EEGFYYPHNLDFRGRAYPMHPHLNHLSSDVCRGVLEFAEG 620
S R LKL AR ++ G Y+PHNLDFRGR YP+ PHL H D+CRG+L F E
Sbjct: 699 ASVRPTFLLKLKSARAFRNVSTGLYFPHNLDFRGRCYPLPPHLQHQGDDLCRGLLMFNEK 758
Query: 621 RPLGKSGLRWLKIHLANLFSGGVEKLSHDGRLAFVENHLYEIFDSAENPINGSRWWLTAE 680
+ LG+ G WL++HLANLF G +KL R+ + + I SA +P+ + +WL A+
Sbjct: 759 KRLGERGWWWLRLHLANLF--GHDKLKLQDRVDWTDRQTESILVSAADPLGNAEFWLEAD 816
Query: 681 DPFQCLAACINLSEALK-SSSPHSVISHLPIHQDGSCNGLQHYAALGRNTLEAAAVNLVA 739
DP+Q LA ++EAL+ P + + +HQDGSCNGLQHYAALGR+ A AVN++
Sbjct: 817 DPWQALAVIFEVAEALRHPGGPEEYSTGISVHQDGSCNGLQHYAALGRDEWGATAVNILP 876
Query: 740 GEKPADVYSEIAVRVHEIMKRDSNKDPSKHPQALLAKILIDQVDRKLVKQTVMTSVYGVT 799
+ DVY + V ++R +++ + QA+ +L RK+VKQTVMT YGVT
Sbjct: 877 NAEVQDVYMIVLDIVKGKVERHADQGHALARQAIELGVL----KRKVVKQTVMTICYGVT 932
Query: 800 FVGAREQIKRRLEE-KGHITDDRQLFAAACYAAKVTLTALGEIFEAARSIMGWLGDCAKV 858
+GAR+Q+K++LE+ G D +L A Y +++ LT++ E+FE A I W ++V
Sbjct: 933 SLGARDQVKKQLEDLVGDTLDSEELMQMAKYLSQLVLTSIDEVFEQAMKIKKWFDVASRV 992
Query: 859 IASENQPVRWTTP-LGLPVVQPYCKNERHLIRTSLQVLAL---------------QREGN 902
+ + PV W+TP LG+P QPY + + SLQ A+ + +
Sbjct: 993 LTAHGLPVCWSTPVLGMPCRQPY--RAQASVDVSLQTSAMAGLNGAMQRYVKVNVESDDM 1050
Query: 903 LVKIRKQRTAFPPNFVHSLDGSHMMMTAVACRDAGLHFAGL 943
V KQR FPPNF+HSLDG+HM++TA GL FA +
Sbjct: 1051 PVSKTKQRMGFPPNFIHSLDGTHMLLTAEESAKHGLAFAAV 1091
>gi|193203364|ref|NP_001122531.1| Protein Y105E8A.23, isoform a [Caenorhabditis elegans]
gi|148879470|emb|CAD21670.3| Protein Y105E8A.23, isoform a [Caenorhabditis elegans]
Length = 1138
Score = 344 bits (882), Expect = 2e-91, Method: Compositional matrix adjust.
Identities = 199/533 (37%), Positives = 304/533 (57%), Gaps = 47/533 (8%)
Query: 441 VPMLVPPKKWKGYNKGGYLFLPSY------VMRTHGSRKQQEALKSVTGNCMKK-VFEAL 493
+PM+VPP+ W GG L+ S +M R +E +T + VF+AL
Sbjct: 538 LPMIVPPRPWIDRGTGGPLYTTSQHEIIRKMMEFRAVRLNEEMRARITSQAQARPVFDAL 597
Query: 494 DTLGSTKWRVNKQVLSVLESIWVSGGNIA--GLVD------RNDVL-IPE------KPLS 538
+ LGST W +N+ +L VL+ ++ GN GL++ R+D IP+ +
Sbjct: 598 NQLGSTPWVINEPMLDVLKDVFGRSGNSESRGLLEKLEIPMRHDTFDIPDFGREFGIGIK 657
Query: 539 EDMTEVQKWKWSVRK---AKKINQERHSQRCDTELKLSVARRMKDEEGFYYPHNLDFRGR 595
++ +V+K++ +K A K+ E +S C + ++ +A + + ++PHN+DFRGR
Sbjct: 658 KEDVDVEKFRSYAKKKAEAIKMRNESNSLWCWMQYRVVLADHFRGQ-TLFFPHNMDFRGR 716
Query: 596 AYPMHPHLNHLSSDVCRGVLEFAEGRPLGKSGLRWLKIHLANLFSGGVEKLSHDGRLAFV 655
YP+ P+L+H+ DV R +L+FA+ + LG+ G WLK+H NL +G +++ S R+
Sbjct: 717 VYPLSPYLSHMGDDVNRCILKFAKSQKLGEKGFDWLKLHCINL-TGTMKRSSVADRMVEA 775
Query: 656 ENHLYEIFDSAENPINGSRWWLTAEDPFQCLAACINLSEALKSSSPHSVI-SHLPIHQDG 714
E + + DSA +P+NG +WW+++++P+Q LAAC+ + A + S ++ S LPIHQDG
Sbjct: 776 ERLIPLMLDSARDPLNGQKWWMSSDEPWQTLAACVEIENATRYGSDVALFPSQLPIHQDG 835
Query: 715 SCNGLQHYAALGRNTLEAAAVNLVAGEKPADVYSEIAVRVHEIMKRDSNKDPSKHPQAL- 773
SCNGLQHYAALGR+ VNL + P DVYS++A RV + ++D + A
Sbjct: 836 SCNGLQHYAALGRDNEGGVQVNLTQSDTPNDVYSDVAQRVEQKRQQDEQSNGEDCDVARK 895
Query: 774 LAKILIDQVDRKLVKQTVMTSVYGVTFVGAREQIKRRLEEKGHITDDRQLFAAACYAAKV 833
L + L V RK++KQTVMT+VYGVT GA QIKR+L+ +D +FA Y A+
Sbjct: 896 LREALPQNVPRKVIKQTVMTTVYGVTMYGAVLQIKRQLKAMDIPGEDAAIFAR--YLARK 953
Query: 834 TLTALGEIFEAARSIMGWLGDCAKVIASENQPVRWTTPLGLPVVQPYCKNERHLIRTSLQ 893
T +L + F ++ ++ W AK + + V W TPLGLPVVQPYCK
Sbjct: 954 TFASLNDAFTSSMALKDWFRLIAKGSSDLMKTVEWITPLGLPVVQPYCK----------- 1002
Query: 894 VLALQREGNLVKI---RKQRTAFPPNFVHSLDGSHMMMTAVACRDAGLHFAGL 943
++R+G L+ KQ AFPPNFVHSLD +HMM+T++ C G+ FA +
Sbjct: 1003 --LVERKGKLILAPVPMKQVDAFPPNFVHSLDSTHMMLTSLNCAQRGITFAAV 1053
>gi|308470906|ref|XP_003097685.1| hypothetical protein CRE_14239 [Caenorhabditis remanei]
gi|308239803|gb|EFO83755.1| hypothetical protein CRE_14239 [Caenorhabditis remanei]
Length = 1135
Score = 342 bits (877), Expect = 6e-91, Method: Compositional matrix adjust.
Identities = 201/532 (37%), Positives = 300/532 (56%), Gaps = 47/532 (8%)
Query: 441 VPMLVPPKKWKGYNKGGYLF-----LPSYVMRTHGSRKQQEALKSVTGNCMKK-VFEALD 494
+PM VPP+ W GG L+ + +M R E + +T + VF+AL+
Sbjct: 537 LPMTVPPRPWIDKGTGGPLYTVGQDIIRNMMEFKSVRLNDEMRQRITSPSQGRPVFDALN 596
Query: 495 TLGSTKWRVNKQVLSVLESIWVSGGNI--------AGLVDRNDVL-IPE------KPLSE 539
LGST W +N+ +L L++++ G+ R D +P+ K E
Sbjct: 597 QLGSTPWVINEPMLDTLKTVFNKSNQKDSEELLEKLGIPMRQDTFDVPDFVTEFGKVKKE 656
Query: 540 DMTEVQKWK-WSVRKAK--KINQERHSQRCDTELKLSVARRMKDEEGFYYPHNLDFRGRA 596
D+ +V+K++ ++ RKA+ K+ E +S C ++ +A + + ++PHN+DFRGR
Sbjct: 657 DI-DVEKFRGYAKRKAEAIKMRNESNSLWCWMLYRVVLADHFRGQ-TLFFPHNMDFRGRV 714
Query: 597 YPMHPHLNHLSSDVCRGVLEFAEGRPLGKSGLRWLKIHLANLFSGGVEKLSHDGRLAFVE 656
YP+ P+L+H+ DV R +L+FA+ +PLG G WLK+H NL +G +++ S R+ E
Sbjct: 715 YPLSPYLSHMGDDVNRCILKFAKSQPLGSKGFDWLKLHCINL-TGTMKRSSVTDRMVEAE 773
Query: 657 NHLYEIFDSAENPINGSRWWLTAEDPFQCLAACINLSEALK-SSSPHSVISHLPIHQDGS 715
L I DSA +P+ G +WW+++++P+Q LAAC+ + +A++ S S S LP+HQDGS
Sbjct: 774 RLLPMILDSARDPLGGEKWWMSSDEPWQTLAACVEIEQAMRYGSDVSSFQSQLPVHQDGS 833
Query: 716 CNGLQHYAALGRNTLEAAAVNLVAGEKPADVYSEIAVRVHEIMKRDSNKDPSKHPQAL-L 774
CNGLQHYAALGR+ VNL + P DVYS++A RV + K+D + AL L
Sbjct: 834 CNGLQHYAALGRDNEGGVQVNLTQSDTPNDVYSDVAQRVEQKRKQDEESNGEDRDVALKL 893
Query: 775 AKILIDQVDRKLVKQTVMTSVYGVTFVGAREQIKRRLEEKGHITDDRQLFAAACYAAKVT 834
L V RK++KQTVMT+VYGVT GA QIKR+L+ +D +FA Y A+ T
Sbjct: 894 RDALPQNVPRKVIKQTVMTTVYGVTMYGAVLQIKRQLKALDIPGEDAAIFAR--YLARKT 951
Query: 835 LTALGEIFEAARSIMGWLGDCAKVIASENQPVRWTTPLGLPVVQPYCKNERHLIRTSLQV 894
+L + F ++ ++ W AK + + V W TPLGLPVVQPYCK
Sbjct: 952 FASLNDAFTSSMALKDWFRLIAKGSSDLMKTVEWITPLGLPVVQPYCK------------ 999
Query: 895 LALQREGNLVKI---RKQRTAFPPNFVHSLDGSHMMMTAVACRDAGLHFAGL 943
+R+ LV + KQ AFPPNFVHSLD +HMM+T++ C G+ FA +
Sbjct: 1000 -LTERKSKLVLVPIPMKQVDAFPPNFVHSLDSTHMMLTSLNCAHRGITFAAV 1050
>gi|193203366|ref|NP_001122532.1| Protein Y105E8A.23, isoform b [Caenorhabditis elegans]
gi|148879471|emb|CAN99761.1| Protein Y105E8A.23, isoform b [Caenorhabditis elegans]
Length = 1156
Score = 339 bits (870), Expect = 4e-90, Method: Compositional matrix adjust.
Identities = 200/549 (36%), Positives = 305/549 (55%), Gaps = 61/549 (11%)
Query: 441 VPMLVPPKKWKGYNKGGYLFLPSY------VMRTHGSRKQQEALKSVTGNCMKK-VFEAL 493
+PM+VPP+ W GG L+ S +M R +E +T + VF+AL
Sbjct: 538 LPMIVPPRPWIDRGTGGPLYTTSQHEIIRKMMEFRAVRLNEEMRARITSQAQARPVFDAL 597
Query: 494 DTLGSTKWRVNKQVLSVLESIWVSGGNIA--GLVD------RNDVL-IPE------KPLS 538
+ LGST W +N+ +L VL+ ++ GN GL++ R+D IP+ +
Sbjct: 598 NQLGSTPWVINEPMLDVLKDVFGRSGNSESRGLLEKLEIPMRHDTFDIPDFGREFGIGIK 657
Query: 539 EDMTEVQKWKWSVRK---AKKINQERHSQRCDTELKLSVARRMKDEEGFYYPHNLDFRGR 595
++ +V+K++ +K A K+ E +S C + ++ +A + + ++PHN+DFRGR
Sbjct: 658 KEDVDVEKFRSYAKKKAEAIKMRNESNSLWCWMQYRVVLADHFRGQ-TLFFPHNMDFRGR 716
Query: 596 AYPMHPHLNHLSSDVCRGVLEFAEGRPLGKSGLRWLKIHLANLFSGGVEKLSHDGRLAFV 655
YP+ P+L+H+ DV R +L+FA+ + LG+ G WLK+H NL +G +++ S R+
Sbjct: 717 VYPLSPYLSHMGDDVNRCILKFAKSQKLGEKGFDWLKLHCINL-TGTMKRSSVADRMVEA 775
Query: 656 ENHLYEIFDSAENPINGSRWWLTAEDPFQCLAACINLSEALKSSSPHSVI-SHLPIHQDG 714
E + + DSA +P+NG +WW+++++P+Q LAAC+ + A + S ++ S LPIHQDG
Sbjct: 776 ERLIPLMLDSARDPLNGQKWWMSSDEPWQTLAACVEIENATRYGSDVALFPSQLPIHQDG 835
Query: 715 SCNGLQHYAALGRNTLEAAAVNLVAGEKPADVYSEIAVRVHEIMKRDSNKDPSKHPQAL- 773
SCNGLQHYAALGR+ VNL + P DVYS++A RV + ++D + A
Sbjct: 836 SCNGLQHYAALGRDNEGGVQVNLTQSDTPNDVYSDVAQRVEQKRQQDEQSNGEDCDVARK 895
Query: 774 LAKILIDQVDRKLVKQTVMTSVYGVTFVGAREQIKRRLEEKGHITDDRQLFA-------- 825
L + L V RK++KQTVMT+VYGVT GA QIKR+L+ +D +FA
Sbjct: 896 LREALPQNVPRKVIKQTVMTTVYGVTMYGAVLQIKRQLKAMDIPGEDAAIFARYLARKTF 955
Query: 826 --------AACYAAKVTLTALGEIFEAARSIMGWLGDCAKVIASENQPVRWTTPLGLPVV 877
A Y A+ T +L + F ++ ++ W AK + + V W TPLGLPVV
Sbjct: 956 ASLNDAAIFARYLARKTFASLNDAFTSSMALKDWFRLIAKGSSDLMKTVEWITPLGLPVV 1015
Query: 878 QPYCKNERHLIRTSLQVLALQREGNLVKI---RKQRTAFPPNFVHSLDGSHMMMTAVACR 934
QPYCK ++R+G L+ KQ AFPPNFVHSLD +HMM+T++ C
Sbjct: 1016 QPYCK-------------LVERKGKLILAPVPMKQVDAFPPNFVHSLDSTHMMLTSLNCA 1062
Query: 935 DAGLHFAGL 943
G+ FA +
Sbjct: 1063 QRGITFAAV 1071
>gi|391337781|ref|XP_003743243.1| PREDICTED: DNA-directed RNA polymerase, mitochondrial-like
[Metaseiulus occidentalis]
Length = 1126
Score = 339 bits (870), Expect = 4e-90, Method: Compositional matrix adjust.
Identities = 219/700 (31%), Positives = 350/700 (50%), Gaps = 33/700 (4%)
Query: 249 PHIELLPADKVAVIVMHKMMGLVMAGHEDRCVQVVQAAVHIGMAIEQEIRIHSFLEKTKN 308
P++ L ++ +++ +M +A V A +G +E I S + +
Sbjct: 372 PYVLALDKSRLVNLLLQEMRAFALAPGSS-SVSFTTVAARLGQKVELLYNIRSKVNGGVS 430
Query: 309 YKRKKIIAD-TEEVLSKEKELLRKRVNSLIKSKRVMEAQKLLKNEETKPWGRDTQAKLGS 367
++ D E S+ R+ SLI + + N + PW R TQ +G
Sbjct: 431 DAITRLYGDYLERSGSQTTTPGREIWQSLIAKNP--QLAPCIGNLQENPWTRSTQVSVGR 488
Query: 368 RLVELLIETAYVQHPVNPADYSPPDVRPAFRHRFKTILKHPGQKTTKRYGVVECDPLVLE 427
L +L Q V+ P + H ++ + + + E +
Sbjct: 489 FLYSML-----RQLKVDVNIMKPNCDKRKLIHALYSVYRTNSARKHEELKAHEVLNTLYS 543
Query: 428 GLDRSAKHMLIPYVPMLVPPKKWKGYNKGGYLF--LPSYVMRTHGSRKQQEALKSVTGNC 485
+ H +PML PPK W Y+ +P + + S KQ A++
Sbjct: 544 KAEIENLHFDATSLPMLCPPKPWTRPEDTPYMISGVPLIRIPSEFSNKQMSAIRESPPEN 603
Query: 486 MKKVFEALDTLGSTKWRVNKQVLSVLESIWVSGGNIAGLVDRNDVLIPEKPLSEDMTEVQ 545
+ +AL+ LG T W+VN +L VL ++++ G++ ++ +P+KP + E
Sbjct: 604 IYPALDALNALGRTPWKVNNPILDVLTTVFLGEGDM-------ELSVPKKPSNMTKPEPS 656
Query: 546 KWKWSVRK--AKKINQERHSQRCDTELKLSVARRMKDEEGFYYPHNLDFRGRAYPMHPHL 603
K V+ +++ E+++ CDT KLS+A K++ F++PHN+DF GRA+P
Sbjct: 657 AHKARVQATLSERKKAEKYALWCDTLHKLSIAHHFKNDV-FFFPHNMDFCGRAHPCPAQF 715
Query: 604 NHLSSDVCRGVLEFAEGRPLGKSGLRWLKIHLANLFSGGVEKLSHDGRLAFVENHLYEIF 663
+HL D+ RG+L FAEG+PLG+ GL WLK+HL L +G + S + R+A+ + + +I
Sbjct: 716 HHLGDDLIRGLLLFAEGKPLGERGLWWLKLHLMKL-TGFSNERSAEERVAYADGIMDDIL 774
Query: 664 DSAENPINGSRWWLTAEDPFQCLAACINLSEALKSSSPHSVISHLPIHQDGSCNGLQHYA 723
DSA NP+NG +WW T+EDP+Q LAAC ++ AL S P I HLPIH DG G QHYA
Sbjct: 775 DSARNPLNGRKWWQTSEDPWQTLAACKEIANALASPKPEEYICHLPIHHDGHYGGPQHYA 834
Query: 724 ALGRNTLEAAAVNLVAGEKPADVYSEIAVRVHEIMKRDSNKDPSKHPQALLAKILIDQVD 783
A G ++ A + + E P DVYS++A V + + +S +A +L +
Sbjct: 835 AFGNDSEGALPADTIPMETPRDVYSKVADAVESLREAESAAGSD------IASVLKGFIK 888
Query: 784 RKLVKQTVMTSVYGVTFVGAREQIKRRLEEKGHITDDRQLFAAACYAAKVTLTALGEIFE 843
K VK++V T+VYG GA QI R+L+ +G + +AA Y A T ++ +
Sbjct: 889 GKTVKESVKTAVYGENRFGAYIQILRKLQVEGFPSSRAN--SAAHYLAIKTFESVEKTLT 946
Query: 844 AARSIMGWLGDCAK-VIASENQPVRWTTPLGLPVVQPYCKNERH--LIRTSLQVLALQRE 900
+ I W CAK ++A+ +PV+WTTPLGLPVVQPY + H L+ + ++
Sbjct: 947 KTKGIQSWFTQCAKAILAATEKPVQWTTPLGLPVVQPYFRTSMHKCLVESDNSAHSILIP 1006
Query: 901 GNLVKIRKQRTAFPPNFVHSLDGSHMMMTAVACRDAGLHF 940
+ + +Q+ FPPNF+HSLD +HMM+TA+ C AG+ F
Sbjct: 1007 TSEPQATRQKNGFPPNFLHSLDSTHMMLTALYCEAAGIRF 1046
>gi|427781025|gb|JAA55964.1| Putative mitochondrial/chloroplast dna-directed rna polymer
[Rhipicephalus pulchellus]
Length = 492
Score = 339 bits (869), Expect = 5e-90, Method: Compositional matrix adjust.
Identities = 178/391 (45%), Positives = 241/391 (61%), Gaps = 16/391 (4%)
Query: 560 ERHSQRCDTELKLSVARRMKDEEGFYYPHNLDFRGRAYPMHPHLNHLSSDVCRGVLEFAE 619
E +S CD KLS+A +D F++PHN+DFRGR YP PH NHL SDV RG+L FA
Sbjct: 22 EMYSLWCDALYKLSIANHFRDRV-FWFPHNMDFRGRVYPCPPHFNHLGSDVVRGILLFAR 80
Query: 620 GRPLGKSGLRWLKIHLANLFSGGVEKLSHDGRLAFVENHLYEIFDSAENPINGSRWWLTA 679
G PLG++GL WLKIHL NL +G ++ RL F + EI DSA+NP+ G RWW +
Sbjct: 81 GEPLGENGLDWLKIHLVNL-TGLKKREPVSERLRFANEMMPEILDSADNPMTGRRWWTKS 139
Query: 680 EDPFQCLAACINLSEALKSSSPHSVISHLPIHQDGSCNGLQHYAALGRNTLEAAAVNLVA 739
++P+Q LA C ++ A++S P I +LP+HQDGSCNGLQHYAALGR+ AA VNL
Sbjct: 140 DEPWQTLACCKEVAAAVRSPDPTRHICYLPVHQDGSCNGLQHYAALGRDAQGAAQVNLQP 199
Query: 740 GEKPADVYSEIAVRVHEIMKRDSNKDPSKHPQALLAKILIDQVDRKLVKQTVMTSVYGVT 799
++P DVYS +A +++++ KD + Q +AK+L + RK+VKQTVMT VYGVT
Sbjct: 200 ADRPQDVYSGVAA----LVEQERQKDAANGLQ--IAKVLEGHIQRKVVKQTVMTVVYGVT 253
Query: 800 FVGAREQIKRRLEEKGHITDDRQLFAAACYAAKVTLTALGEIFEAARSIMGWLGDCAKVI 859
GA QI ++L++ + +AAA Y + T +L ++F A R I W CAK+I
Sbjct: 254 RFGAHLQILKQLKDLDDFPQE-HCWAAAHYLVQKTFLSLQQMFTATREIQDWFTICAKMI 312
Query: 860 ASE-NQPVRWTTPLGLPVVQPYCKNE------RHLIRTSLQVLALQREGNLVKIRKQRTA 912
+ QPV W TPLGLPV+QPY K + R S + + + KQ+
Sbjct: 313 SYVCCQPVSWVTPLGLPVIQPYHKPTSVKSPISYGDRISAEYRTIFEMHQRPNVMKQKNG 372
Query: 913 FPPNFVHSLDGSHMMMTAVACRDAGLHFAGL 943
FPPNF+HSLD HMM+TA+ C+ AG+ F +
Sbjct: 373 FPPNFIHSLDSCHMMLTAIFCQKAGIQFVSV 403
>gi|302423578|ref|XP_003009619.1| DNA-directed RNA polymerase [Verticillium albo-atrum VaMs.102]
gi|261352765|gb|EEY15193.1| DNA-directed RNA polymerase [Verticillium albo-atrum VaMs.102]
Length = 1299
Score = 336 bits (862), Expect = 3e-89, Method: Compositional matrix adjust.
Identities = 181/425 (42%), Positives = 252/425 (59%), Gaps = 65/425 (15%)
Query: 570 LKLSVARRMKDEEGFYYPHNLDFRGRAYPMHPHLNHLSSDVCRGVLEFAEGRPLGKSGLR 629
++L +AR +++ FY+PHN+DFRGRAYP+ +LNH+ +D RG+L FA+G+ LG+ GL+
Sbjct: 648 VRLEIARAFRNQT-FYFPHNIDFRGRAYPLPTYLNHMGADHVRGLLRFADGKELGEKGLK 706
Query: 630 WLKIHLANLFSGGVEKLSHDGRLAFVENHLYEIFDSAENPINGSRWWLTAEDPFQCLAAC 689
WLK+HLAN++ G +K S R +F ++L IFDSA P+ G+RWWL AEDP+QCLAAC
Sbjct: 707 WLKVHLANVY--GFDKASLRERESFAMDNLVNIFDSASKPMEGNRWWLKAEDPWQCLAAC 764
Query: 690 INLSEALKSSSPHSVISHLPIHQDGSCNGLQHYAALGRNTLEAAAVNLVAGEKPADVYSE 749
L AL+S P +SHLP+HQDG+CNGLQHYAALG +T A VNL G+KPADVYS
Sbjct: 765 FELKAALESPEPTKFVSHLPVHQDGTCNGLQHYAALGGDTWGAKQVNLEPGDKPADVYSA 824
Query: 750 IAVRVHEIMKRDSNKDPSKHPQALLAKILIDQVDRKLVKQTVMTSVYGVTFVGAREQIKR 809
+A V + + +D + +P A+ ++ RK+VKQTVMT+VYGVTF GA++Q+ +
Sbjct: 825 VANIVKDYIAKDLE---TNNPFAIAVN---GKITRKVVKQTVMTNVYGVTFQGAKKQVLK 878
Query: 810 RLE--------EKGHITDDRQLFAAACYAAKVTLTALGEIFEAARSIMGWLGDCA----- 856
+L+ E G + A Y A + L +F A I WLG+
Sbjct: 879 QLDAIYPDLPKESGISS-----MMLASYIATLIFKGLSSMFRGAHDIQYWLGEIGGRVCR 933
Query: 857 -------KVIASEN-----QPVR------------------------WTTPLGLPVVQPY 880
+ IAS+ PV WTTPL +PV QPY
Sbjct: 934 ALSAEQLERIASDGIIVSPSPVNRFKITEKKESSTDDLLAQFRATIVWTTPLRMPVAQPY 993
Query: 881 CKNERHLIRTSLQVLALQ--REGNLVKIRKQRTAFPPNFVHSLDGSHMMMTAVACRDAGL 938
K+ +I+TSLQ L+L + V +KQ AFPPNF+HSLD +HM+++A+ C + GL
Sbjct: 994 RKSGTRIIKTSLQDLSLTVPERSDPVNRKKQLQAFPPNFIHSLDATHMLLSALECSELGL 1053
Query: 939 HFAGL 943
FA +
Sbjct: 1054 SFAAV 1058
Score = 47.8 bits (112), Expect = 0.032, Method: Compositional matrix adjust.
Identities = 58/242 (23%), Positives = 110/242 (45%), Gaps = 31/242 (12%)
Query: 244 KAAYAPHIEL-LPADKVAVIVMHKMMGLVMAGHEDRCVQVVQAAVHIGMAIEQEIRIHSF 302
+ Y P + L P+ AV ++ + + G D+ + + A + E++IR
Sbjct: 431 RCTYGPFLRLSTPSRLAAVTILGTLSSTAILG-VDKGMPLSAALSSLAKLAEEDIRAQMT 489
Query: 303 LE----KTKNYKRKKIIADTEEVLSKEKELLRKRVNSLIKSKRVMEAQKLLKNEETK--- 355
++ KT KR++++ +V SK +L R + E + L K+ E +
Sbjct: 490 VKNSKTKTNKSKRRRVV----QVASKSSKLDAVRAELGAEG----EVKPLAKDTEPRADT 541
Query: 356 PWGRDTQAKLGSRLVELLIETAYV----QHPVNPADYSPPDVRPAFRHRFKTILKHPGQK 411
PW +AK+ + L+ LI+TA + +HP S +PAF H + +
Sbjct: 542 PWPVAVKAKVAAALLSALIDTAKIKVVKEHPETKTLIS--QYQPAFSHATQL-------R 592
Query: 412 TTKRYGVVECDPLVLEGLDRSAK-HMLIPYVPMLVPPKKWKGYNKGGYLFLPSYVMRTHG 470
K+ G+V + ++ + R + L ++PM+V P+ W ++KGG+L S ++R
Sbjct: 593 RGKKIGMVLLNKELVNIMKREPQGDFLAKHLPMVVKPEPWSKFDKGGFLESTSNLVRLEI 652
Query: 471 SR 472
+R
Sbjct: 653 AR 654
>gi|341876528|gb|EGT32463.1| hypothetical protein CAEBREN_29975 [Caenorhabditis brenneri]
Length = 1223
Score = 336 bits (861), Expect = 4e-89, Method: Compositional matrix adjust.
Identities = 198/531 (37%), Positives = 290/531 (54%), Gaps = 50/531 (9%)
Query: 441 VPMLVPPKKWKGYNKGGYLFLPSY-----VMRTHGSRKQQEALKSVTGNCMKK-VFEALD 494
+PM VPP+ W GG L+ S ++ R E + +T + VF+AL+
Sbjct: 529 LPMTVPPRPWIDKGTGGPLYKTSQEIIRKMLEFKAVRLNDEMRQRITSPSQARPVFDALN 588
Query: 495 TLGSTKWRVNKQVLSVLESIWVSGGNIA--------GLVDRNDVL-IPE--------KPL 537
LGST W +N+ +L L+ ++ + A G+ R+D IP+ K
Sbjct: 589 QLGSTPWVINEPMLDTLKEVFEKSKDSASEPLLEKLGIPMRHDTFDIPDFVREFGKVKRE 648
Query: 538 SEDMTEVQKWKWSVRKAKKINQERHSQRCDTELKLSVARRMKDEEGFYYPHNLDFRGRAY 597
D+ +++ +A K E +S C + ++ +A + ++PHN+DFRGR Y
Sbjct: 649 DVDVDRFREYAKKKAEAVKARNESNSLWCWMQYRVVLADHFRGR-TLFFPHNMDFRGRVY 707
Query: 598 PMHPHLNHLSSDVCRGVLEFAEGRPLGKSGLRWLKIHLANLFSGGVEKLSHDGRLAFVEN 657
P+ P+L+H+ DV R +L+FA+ +PLG G WLK+H NL +G +++ S R+ E
Sbjct: 708 PLSPYLSHMGDDVNRCILKFAKSQPLGDKGYDWLKLHCINL-TGTMKRASVADRMLEAER 766
Query: 658 HLYEIFDSAENPINGSRWWLTAEDPFQCLAACINLSEALKSSSPHSVI-SHLPIHQDGSC 716
L I DSA NP+ G +WW+++++P+Q LAAC+ + +A S + S LP+HQDGSC
Sbjct: 767 LLPLILDSARNPLGGEKWWMSSDEPWQTLAACVEIEQATHFGSDIPLFPSQLPVHQDGSC 826
Query: 717 NGLQHYAALGRNTLEAAAVNLVAGEKPADVYSEIAVRVHEIMKRDSNKDPSKHPQAL-LA 775
NGLQHYAALGR+ VNL E P DVYS++A+R+ D H AL L
Sbjct: 827 NGLQHYAALGRDNEGGVQVNLTRCETPNDVYSDVAMRLESTTSED-------HDVALKLR 879
Query: 776 KILIDQVDRKLVKQTVMTSVYGVTFVGAREQIKRRLEEKGHITDDRQLFAAACYAAKVTL 835
+ L V RK++KQTVMT+VYGVT GA QIKR+L+ +D Q A Y A+ T
Sbjct: 880 QSLPQNVPRKVIKQTVMTTVYGVTMYGAVLQIKRQLKALDIPGEDFQAALFARYLARKTF 939
Query: 836 TALGEIFEAARSIMGWLGDCAKVIASENQPVRWTTPLGLPVVQPYCKNERHLIRTSLQVL 895
+L + F ++ ++ W AK + + V W TPLGLPVVQPYC+
Sbjct: 940 ASLNDAFTSSMALKDWFRLIAKGASDLTKTVEWITPLGLPVVQPYCR------------- 986
Query: 896 ALQREGNLVKI---RKQRTAFPPNFVHSLDGSHMMMTAVACRDAGLHFAGL 943
++R LV + KQ AFPPNFVHSLD +HMM+T++ C D G+ FA +
Sbjct: 987 LVERRSKLVLVPIPMKQVDAFPPNFVHSLDSTHMMLTSLNCSDRGITFAAV 1037
Score = 86.7 bits (213), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 46/119 (38%), Positives = 66/119 (55%), Gaps = 19/119 (15%)
Query: 821 RQLFAAACYA---AKVTLTALGEIFEAARSIMGWLGDCAKVIASENQPVRWTTPLGLPVV 877
++ F AA +A A+ T +L + F ++ ++ W AK + + V W TPLGLPVV
Sbjct: 1115 KESFQAALFARYLARKTFASLNDAFTSSMALKDWFRLIAKGASDLTKTVEWITPLGLPVV 1174
Query: 878 QPYCKNERHLIRTSLQVLALQREGNLVKI---RKQRTAFPPNFVHSLDGSHMMMTAVAC 933
QPYC+ ++R LV + KQ AFPPNFVHSLD +HMM+T++ C
Sbjct: 1175 QPYCR-------------LVERRSKLVLVPIPMKQVDAFPPNFVHSLDSTHMMLTSLNC 1220
>gi|401412922|ref|XP_003885908.1| DNA-directed RNA polymerase,related [Neospora caninum Liverpool]
gi|325120328|emb|CBZ55882.1| DNA-directed RNA polymerase,related [Neospora caninum Liverpool]
Length = 2032
Score = 334 bits (856), Expect = 1e-88, Method: Compositional matrix adjust.
Identities = 204/532 (38%), Positives = 291/532 (54%), Gaps = 57/532 (10%)
Query: 441 VPMLVPPKKWKGYNKGGYLFLPSYVMRTHGSRKQQEALKSVTGNCMKKVFEALDT----- 495
P PKK + KGG G R++ L M + F A +T
Sbjct: 1404 TPAETSPKKGEKRAKGG------------GKREKIAFLGGAGRVKMARDFHAYNTALPRA 1451
Query: 496 ----LGSTKWRVNKQVLSVLESIWVSGGNIAGLVDRNDVLIPEKPLSEDMTEVQ------ 545
LG+ WR+NK VLSV+E+ W G I L R+ + E+ L
Sbjct: 1452 VVSALGAQAWRINKDVLSVMEAAWQRGLEIGRLPPRDSAALDEEILQLRKVATDPGAGAA 1511
Query: 546 ---------KWKWSVRKAKKINQERHSQRCDTELKLSVARRMKDEEGFYYPHNLDFRGRA 596
+ + +++A K+ ER S LKL VA ++ + Y+PHN+DFRGR
Sbjct: 1512 SGASSAASIRLRHLLQQAGKLQSERPS----FLLKLQVASCFQNLDAVYFPHNIDFRGRC 1567
Query: 597 YPMHPHLNHLSSDVCRGVLEFAEGRPLGKSGLRWLKIHLANLFSGGVEKLSHDGRLAFVE 656
YP+ PHLNH+ D+CR +L FAE +PLG +GL WLK+H+ANLF GV K+S R A+V+
Sbjct: 1568 YPLPPHLNHMGDDICRSLLVFAEPKPLGPNGLGWLKVHIANLF--GVNKVSFADRQAWVD 1625
Query: 657 NHLYEIFDSAENPINGSRWWL---TAEDPFQCLAACINLSEALKSSSPHSV--ISHLPIH 711
L ++ A++P+N L A+DP+Q L+A + L + L + +S +S LPIH
Sbjct: 1626 ARLDQLLQVADDPLNPRSLHLLDQEADDPWQALSALLELKKVLAHGAENSAQFLSRLPIH 1685
Query: 712 QDGSCNGLQHYAALGRNTLEAAAVNLVAGEKPADVYSEIAVRVHEIMKRDSNKDPSKH-- 769
QDGSCNGLQHYAALGR+ AVNLV GEKP DVYS + V + + D+ + P
Sbjct: 1686 QDGSCNGLQHYAALGRDRRGGEAVNLVGGEKPRDVYSFVLEVVKQRVHADAARGPGPEGL 1745
Query: 770 --PQALLAKILI--DQVDRKLVKQTVMTSVYGVTFVGAREQIKRRLEEK-GHITDDRQLF 824
P+ LA +L+ + + RK+VKQTVMT YGVT +GAR+Q+ R+LE+ G D+ L
Sbjct: 1746 APPEKRLAGLLMHHNLLQRKVVKQTVMTICYGVTAIGARDQVTRQLEDLIGETVDEATLK 1805
Query: 825 AAACYAAKVTLTALGEIFEAARSIMGWLGDCAKVIASENQPVRWTTPL-GLPVVQPYCKN 883
+ Y ++V L+++GE+F++A + WL + +K++ PV W PL QPY
Sbjct: 1806 SLGGYLSRVVLSSIGEVFQSAMRLKKWLDEVSKMLNRLGLPVAWMLPLVQFGAEQPYRSG 1865
Query: 884 ERHLIRTSLQ--VLALQREGNLVKIRKQRTAFPPNFVHSLDGSHMMMTAVAC 933
+ +RT LQ ++ + E KQR FPPNF+HSLD +HMM+TA C
Sbjct: 1866 KALEVRTVLQTHIVRVAGEDTPTSASKQRLGFPPNFIHSLDATHMMLTARRC 1917
>gi|89148156|gb|ABD62821.1| mitochondrial single-subunit RNA polymerase [Paravahlkampfia sp.
LA]
Length = 400
Score = 332 bits (852), Expect = 4e-88, Method: Compositional matrix adjust.
Identities = 171/340 (50%), Positives = 237/340 (69%), Gaps = 11/340 (3%)
Query: 606 LSSDVCRGVLEFAEGRPLGKSGLRWLKIHLANLFSGGVEKLSHDGRLAFVENHLYEIFDS 665
L +DV RG+L FAEG+P+ + G+ WLKIHLANL G +KLS + R+ ++++++ +I DS
Sbjct: 1 LGADVNRGLLLFAEGQPISEKGIFWLKIHLANL--DGKDKLSFEERVQYIDDNIDDIMDS 58
Query: 666 AENPINGSRWWLTAEDPFQCLAACINLSEALKSSSPHSVISHLPIHQDGSCNGLQHYAAL 725
A+ P+ G RW+L E+P+Q LAACI L+ L++ P +S LP+ DGSCNGLQHYAAL
Sbjct: 59 ADRPLEGKRWFLGTENPWQALAACIELTNCLRAPVPTEYVSKLPVQMDGSCNGLQHYAAL 118
Query: 726 GRNTLEAAAVNLVAGEKPADVYSEIAVRVHEIMKRDSNKDPSKHPQALLAKILIDQVDRK 785
GR+ L A VNL+ EKP DVY+ + V + ++ D+ LAK L+ ++ R
Sbjct: 119 GRDNLGALHVNLLPTEKPMDVYNGVLALVVKYLENDARNGNQ------LAKSLVGKIYRS 172
Query: 786 LVKQTVMTSVYGVTFVGAREQIKRRLEEKGHITDDRQLFAAACYAAKVTLTALGEIFEAA 845
+KQTVMTSVYGVT+VGAREQI+RRL+EK I +D ++ CY A VTL +LGE+F+ A
Sbjct: 173 TIKQTVMTSVYGVTYVGAREQIQRRLKEKKEI-EDELVYQGPCYLASVTLKSLGEVFKGA 231
Query: 846 RSIMGWLGDCAKVIASENQPVRWTTPLGLPVVQPYCKNERHLIRTSLQ-VLALQREGNL- 903
++IM WL +CA +I+S +PV W TPLGLPVVQPY ++ I+T LQ V + R L
Sbjct: 232 KAIMDWLNECAYLISSAGEPVFWVTPLGLPVVQPYRSAQKMNIKTVLQNVTLVDRSDELP 291
Query: 904 VKIRKQRTAFPPNFVHSLDGSHMMMTAVACRDAGLHFAGL 943
V +KQ++AFPPN+VHS+D SHM+MTA AC+D + FA +
Sbjct: 292 VSRQKQKSAFPPNYVHSMDASHMLMTAKACKDDNISFASV 331
>gi|444509517|gb|ELV09312.1| DNA-directed RNA polymerase, mitochondrial [Tupaia chinensis]
Length = 1350
Score = 332 bits (851), Expect = 7e-88, Method: Compositional matrix adjust.
Identities = 171/398 (42%), Positives = 245/398 (61%), Gaps = 34/398 (8%)
Query: 549 WSVRKAKKINQERHSQRCDTELKLSVARRMKDEEGFYYPHNLDFRGRAYPMHPHLNHLSS 608
+S R +++ +E HS R D +LS+A+ ++ + F+ PHN+DFRGR YP PHLNHL S
Sbjct: 896 YSFRSYRQVAREMHSLRADALYRLSLAQHLR-QRVFWLPHNMDFRGRTYPCPPHLNHLGS 954
Query: 609 DVCRGVLEFAEGRPLGKSGLRWLKIHLANLFSGGVEKLSHDGRLAFVENHLYEIFDSAEN 668
D+ R +LEFAEGRPLG GL WLKIHL NL +G ++ S RLAF + +I DSA+
Sbjct: 955 DLARALLEFAEGRPLGPQGLDWLKIHLINL-TGLKKRESLQARLAFANEVMDDILDSADR 1013
Query: 669 PINGSRWWLTAEDPFQCLAACINLSEALKSSSPHSVISHLPIHQDGSCNGLQHYAALGRN 728
P+ G +WW+ A++P+Q LA C+ ++ A++S P + +SHLP+HQDGSCNGLQHYAALGR+
Sbjct: 1014 PMTGRKWWMEADEPWQTLACCMEVARAMRSPDPTAYVSHLPVHQDGSCNGLQHYAALGRD 1073
Query: 729 TLEAAAVNLVAGEKPADVYSEIAVRVHEIMKRDSNKDPSKHPQALLAKILIDQVDRKLVK 788
++ AA+VNL+ + P DVYS +A +V ++D+ + +A+ L V RK+VK
Sbjct: 1074 SVGAASVNLLPSDLPQDVYSGVAAQVELFRQQDAAQG------VRVAQELEGFVRRKVVK 1127
Query: 789 QTVMTSVYGVTFVGAREQIKRRLEEKGHITDDRQLFAAACYAAKVTLTALGEIFEAARSI 848
QTVMT VYGVT G R QI++RL E + ++ + Y + +L E+F R+I
Sbjct: 1128 QTVMTVVYGVTRYGGRLQIEKRLRELSDFPQEL-VWETSHYLVRQVFNSLQEMFAGTRAI 1186
Query: 849 MGWLGDCAKVIASENQPVRWTTPLGLPVVQPYCKNERHLIR---TSLQVLALQREGNLVK 905
WL + A++IA V W TPLG+P++QPY + + L+ T LQV+
Sbjct: 1187 QRWLTESARLIAHSGSAVEWVTPLGIPIIQPYHHDSKFLVSGAPTPLQVI---------- 1236
Query: 906 IRKQRTAFPPNFVHSLDGSHMMMTAVACRDAGLHFAGL 943
+HSLD SHMM+TA+ C GL F +
Sbjct: 1237 ------------IHSLDSSHMMLTALHCYRRGLTFVSV 1262
>gi|456738227|gb|EMF62904.1| DNA-directed RNA polymerase [Stenotrophomonas maltophilia EPM1]
Length = 811
Score = 332 bits (851), Expect = 7e-88, Method: Compositional matrix adjust.
Identities = 213/603 (35%), Positives = 312/603 (51%), Gaps = 61/603 (10%)
Query: 376 TAYVQHPVNPADYSPPDVRPAFRHRFKTILKHPGQKTTKRYGVVECDPLV--LEGLDRSA 433
TA ++H + A+++P D + + +L G K + + VE LV + +R
Sbjct: 152 TAVMRHVIADAEFAPEDDKRLYLSDKDALLV--GMKLIELF--VEATGLVELVTVAERGK 207
Query: 434 KHMLIP----------------------YVPMLVPPKKWKGYNKGGYLFLPSYVMRTHGS 471
+H+LI +PM+VPP+ W GGYL R
Sbjct: 208 RHLLIAGNQKVLDWLTKAHDSAALYQPVLMPMVVPPRPWTTPRDGGYL--TDIGGRADLV 265
Query: 472 RKQQEALKSVTGNC-MKKVFEALDTLGSTKWRVNKQVLSVLESIWVSGGNIAGLVDRNDV 530
R + A K M V++AL+ + +T W+VN VL V+ +W +GG +AGL +R +
Sbjct: 266 RTRNRAYKRELALVDMPNVYQALNAIQATAWKVNVPVLEVMRELWNAGGGVAGLPERELM 325
Query: 531 LIPEKP--LSED--------MTEVQKWKWSVRKAKKINQERHSQRCDTELKLSVARRMKD 580
+P +P L D E ++WK K + N S R K+++A + +
Sbjct: 326 DLPSRPALLETDPDYFKEHHADEFKEWKRDRAKVYEANARSVSTRLAAAQKIALAEKFAE 385
Query: 581 EEGFYYPHNLDFRGRAYPMHPHLNHLSSDVCRGVLEFAEGRPLGKSGLRWLKIHLANLFS 640
Y+PHNLDFRGR YP+ P L D +G+L FA+G PLG+ G WL IH+AN F
Sbjct: 386 YPAIYFPHNLDFRGRCYPLPPTLTPQGDDAAKGLLTFAQGVPLGEDGAYWLAIHVANCF- 444
Query: 641 GGVEKLSHDGRLAFVENHLYEIFDSAENPINGSRWWLTAEDPFQCLAACINLSEALKSSS 700
GV+K+S + R+A+V H +I DSA +P++G R+W+ A+ PF LAAC +
Sbjct: 445 -GVDKVSFEERVAWVREHEEQILDSALDPLDGQRFWMDADSPFCALAACFEWLGYSLNGR 503
Query: 701 PHSVISHLPIHQDGSCNGLQHYAALGRNTLEAAAVNLVAGEKPADVYSEIAVRVHEIMK- 759
H +SHLPI DGSCNGLQ+++A+ R+++ AA NL+ KPAD+YS + E ++
Sbjct: 504 DH--VSHLPIALDGSCNGLQNFSAMLRDSVGGAATNLIPQPKPADIYSRVKDVAQEKLRA 561
Query: 760 RDSNKDPSKHPQALLAKILIDQVDRKLVKQTVMTSVYGVTFVGAREQIKRRLEEKGHITD 819
R + DP LA L Q+ R +VKQ VMT YGVT G R Q+ + ++ G + D
Sbjct: 562 RAESGDP-------LAIKLDGQLTRDIVKQPVMTLPYGVTKSGMRAQVLSKFKKLG-MED 613
Query: 820 DRQLFAAACYAAKVTLTALGEIFEAARSIMGWLGDCAKVIASENQPVRWTTPLGLPVVQP 879
D + A Y A + +GE+ AAR+ M WL D +KV +S + PV WTTP G PV+Q
Sbjct: 614 D---WETAEYLATLLWECIGEVVIAARAAMDWLRDASKVASSADLPVSWTTPAGFPVLQE 670
Query: 880 YCKNERHLIRTSLQV----LALQREGNLVKIRKQRTAFPPNFVHSLDGSHMMMTAVACRD 935
Y + E IR + L + G + R+Q PNFVHS D SHMM+T +
Sbjct: 671 YREEEGVRIRPHVGGREVNLVVNIGGTKLDRRRQTLGISPNFVHSCDASHMMLTTCLAAE 730
Query: 936 AGL 938
G+
Sbjct: 731 NGI 733
>gi|221485456|gb|EEE23737.1| DNA-dependent RNA polymerase, putative [Toxoplasma gondii GT1]
Length = 2101
Score = 331 bits (849), Expect = 1e-87, Method: Compositional matrix adjust.
Identities = 196/488 (40%), Positives = 274/488 (56%), Gaps = 46/488 (9%)
Query: 486 MKKVFEALDT---------LGSTKWRVNKQVLSVLESIWVSGGNIAGLVDRNDVLIPEK- 535
M + F A DT LGS WR+NK VL V+E++W G + L R+ + E+
Sbjct: 1513 MARDFHAYDTALPRAVVSALGSQAWRINKAVLGVMEAVWERGLEVGRLPPRDSAGLEEEI 1572
Query: 536 ---------PLSEDMTEVQ-KWKWSVRKAKKINQERHSQRCDTELKLSVARRMKDEEGFY 585
P S + + + +++A K+ ER S LKL VAR + + Y
Sbjct: 1573 FQLRRVVSNPRSSGTSAASIRLRHLLQQAGKLQSERPS----FLLKLQVARCFQHLDAVY 1628
Query: 586 YPHNLDFRGRAYPMHPHLNHLSSDVCRGVLEFAEGRPLGKSGLRWLKIHLANLFSGGVEK 645
+PHN+DFRGR YP+ PHLNH+ D+CR +L FAE +PLG GL WLK+H+ANLF GV K
Sbjct: 1629 FPHNIDFRGRCYPLPPHLNHMGDDICRSLLVFAEAKPLGPQGLGWLKVHIANLF--GVNK 1686
Query: 646 LSHDGRLAFVENHLYEIFDSAENPINGSRWWL---TAEDPFQCLAACINLSEALKSSSPH 702
+S R A+V+ ++ AE+P+N L A+DP+Q L+A + L + + +
Sbjct: 1687 VSFAERQAWVDARREQLLQVAEDPLNPRSLHLLEQEADDPWQALSALLELKKVVAHGEKN 1746
Query: 703 SV--ISHLPIHQDGSCNGLQHYAALGRNTLEAAAVNLVAGEKPADVYS----EIAVRVHE 756
S +S LPIHQDGSCNGLQHYAALGR+ AVNL+ GEKP DVYS + RVH
Sbjct: 1747 SAQFLSALPIHQDGSCNGLQHYAALGRDRRGGEAVNLIGGEKPRDVYSFVLEVVKQRVHA 1806
Query: 757 IMKRDSNKDPSKH-----PQALLAKILIDQ--VDRKLVKQTVMTSVYGVTFVGAREQIKR 809
R S P++ LA +LI+ + RK+VKQTVMT YGVT +GAR+Q+ R
Sbjct: 1807 DAARGSEGSGCSGAAPPPPESRLAALLIEHNLLQRKVVKQTVMTICYGVTAIGARDQVTR 1866
Query: 810 RLEEK-GHITDDRQLFAAACYAAKVTLTALGEIFEAARSIMGWLGDCAKVIASENQPVRW 868
+LE+ G D+ L + Y ++V L+++GE+F++A + WL + +K + PV W
Sbjct: 1867 QLEDLIGETVDEATLKSLGGYLSRVVLSSIGEVFQSAMRLKKWLDEVSKTLNRLGLPVAW 1926
Query: 869 TTPL-GLPVVQPYCKNERHLIRTSLQVLALQREGN--LVKIRKQRTAFPPNFVHSLDGSH 925
PL QPY + +RT Q ++ G+ KQR FPPNF+HSLD +H
Sbjct: 1927 MLPLIHFGAEQPYRSGKAMEVRTVFQTHIVRVAGDDTPTSASKQRLGFPPNFIHSLDATH 1986
Query: 926 MMMTAVAC 933
MM+TA C
Sbjct: 1987 MMLTARRC 1994
>gi|237835433|ref|XP_002367014.1| DNA-dependent RNA polymerase, putative [Toxoplasma gondii ME49]
gi|211964678|gb|EEA99873.1| DNA-dependent RNA polymerase, putative [Toxoplasma gondii ME49]
gi|221506312|gb|EEE31947.1| DNA-dependent RNA polymerase, putative [Toxoplasma gondii VEG]
Length = 2084
Score = 331 bits (849), Expect = 1e-87, Method: Compositional matrix adjust.
Identities = 196/488 (40%), Positives = 274/488 (56%), Gaps = 46/488 (9%)
Query: 486 MKKVFEALDT---------LGSTKWRVNKQVLSVLESIWVSGGNIAGLVDRNDVLIPEK- 535
M + F A DT LGS WR+NK VL V+E++W G + L R+ + E+
Sbjct: 1496 MARDFHAYDTALPRAVVSALGSQAWRINKAVLGVMEAVWERGLEVGRLPPRDSAGLEEEI 1555
Query: 536 ---------PLSEDMTEVQ-KWKWSVRKAKKINQERHSQRCDTELKLSVARRMKDEEGFY 585
P S + + + +++A K+ ER S LKL VAR + + Y
Sbjct: 1556 FQLRRVVSNPRSSGTSAASIRLRHLLQQAGKLQSERPS----FLLKLQVARCFQHLDAVY 1611
Query: 586 YPHNLDFRGRAYPMHPHLNHLSSDVCRGVLEFAEGRPLGKSGLRWLKIHLANLFSGGVEK 645
+PHN+DFRGR YP+ PHLNH+ D+CR +L FAE +PLG GL WLK+H+ANLF GV K
Sbjct: 1612 FPHNIDFRGRCYPLPPHLNHMGDDICRSLLVFAEAKPLGPQGLGWLKVHIANLF--GVNK 1669
Query: 646 LSHDGRLAFVENHLYEIFDSAENPINGSRWWL---TAEDPFQCLAACINLSEALKSSSPH 702
+S R A+V+ ++ AE+P+N L A+DP+Q L+A + L + + +
Sbjct: 1670 VSFAERQAWVDARREQLLQVAEDPLNPRSLHLLEQEADDPWQALSALLELKKVVAHGEKN 1729
Query: 703 SV--ISHLPIHQDGSCNGLQHYAALGRNTLEAAAVNLVAGEKPADVYS----EIAVRVHE 756
S +S LPIHQDGSCNGLQHYAALGR+ AVNL+ GEKP DVYS + RVH
Sbjct: 1730 SAQFLSALPIHQDGSCNGLQHYAALGRDRRGGEAVNLIGGEKPRDVYSFVLEVVKQRVHA 1789
Query: 757 IMKRDSNKDPSKH-----PQALLAKILIDQ--VDRKLVKQTVMTSVYGVTFVGAREQIKR 809
R S P++ LA +LI+ + RK+VKQTVMT YGVT +GAR+Q+ R
Sbjct: 1790 DAARGSEGSGCSGAAPPPPESRLAALLIEHNLLQRKVVKQTVMTICYGVTAIGARDQVTR 1849
Query: 810 RLEEK-GHITDDRQLFAAACYAAKVTLTALGEIFEAARSIMGWLGDCAKVIASENQPVRW 868
+LE+ G D+ L + Y ++V L+++GE+F++A + WL + +K + PV W
Sbjct: 1850 QLEDLIGETVDEATLKSLGGYLSRVVLSSIGEVFQSAMRLKKWLDEVSKTLNRLGLPVAW 1909
Query: 869 TTPL-GLPVVQPYCKNERHLIRTSLQVLALQREGN--LVKIRKQRTAFPPNFVHSLDGSH 925
PL QPY + +RT Q ++ G+ KQR FPPNF+HSLD +H
Sbjct: 1910 MLPLIHFGAEQPYRSGKAMEVRTVFQTHIVRVAGDDTPTSASKQRLGFPPNFIHSLDATH 1969
Query: 926 MMMTAVAC 933
MM+TA C
Sbjct: 1970 MMLTARRC 1977
>gi|68070003|ref|XP_676913.1| DNA-dependent RNA polymerase [Plasmodium berghei strain ANKA]
gi|56496821|emb|CAH94868.1| DNA-dependent RNA polymerase, putative [Plasmodium berghei]
Length = 845
Score = 330 bits (846), Expect = 2e-87, Method: Compositional matrix adjust.
Identities = 193/558 (34%), Positives = 308/558 (55%), Gaps = 43/558 (7%)
Query: 395 PAFRHRFKTILKHPGQKTTKRYGVV----ECDPLVLEGLDRSAKHMLIPYVPMLVPPKKW 450
P F H + K YGV+ C +L S H+ + Y+PM+ PKKW
Sbjct: 224 PVFVHSYI-------WKNNNWYGVIHMRESCANFLLNNAINS--HVPLNYLPMICKPKKW 274
Query: 451 KGYNKGGYLFLPSYVMRTHGSRKQQEALKSVTGNCMKKVFEALDTLGSTKWRVNKQVLSV 510
+ ++GG L L + +R + + L ++ M ++ + +G+ W+VNK++L
Sbjct: 275 EN-DQGGMLLLKNNFIRYN-----IKPLFNLNVCNMSRIKNIVSEIGNVGWKVNKEILHY 328
Query: 511 LESIWVSGGNIAGL-VDRNDVLIPEKPLSEDMTEVQKWKWSV-------RKAKKINQERH 562
+E +++G I + +++N L P + D+ + + + ++N+
Sbjct: 329 IEYAYMNGKTIGKIPLNKNYNL----PYNIDLKKNNNNNEEIKKFYLLKEEITRLNKCLI 384
Query: 563 SQRCDTELKLSVARRMKDEEGFYYPHNLDFRGRAYPMHPHLNHLSSDVCRGVLEFAEGRP 622
S+R KL+VA+ K+ E Y+PHN+DFRGR YP+ PHL+H+ D+CR ++ F+ G
Sbjct: 385 SERPTFLQKLAVAKTFKENEQIYFPHNIDFRGRMYPLSPHLHHMGDDICRSLIVFSNGEE 444
Query: 623 LGKSGLRWLKIHLANLFSGGVEKLSHDGRLAFVENHLYEIFDSAENPINGSRWWLTAEDP 682
+G +GL WLK+HLAN F G +KL+ R+ +V+ ++ I +ENP +W A++P
Sbjct: 445 IGPNGLYWLKVHLANNF--GKDKLNFKKRIEWVDQNINNIKKLSENPFENLEFWGLADNP 502
Query: 683 FQCLAACINLSEALKSSSPHSVISHLPIHQDGSCNGLQHYAALGRNTLEAAAVNLVAGEK 742
+Q LA I+L AL SS P S++PI QDG+CNGLQHYAALG++ AVN++ ++
Sbjct: 503 WQALAVSIDLINALNSSDPSKYKSNMPIQQDGTCNGLQHYAALGKDKDGGRAVNILPSDE 562
Query: 743 PADVYS---EIAV-RVHEIMKRDSNKDPSKH--PQALLAKILI--DQVDRKLVKQTVMTS 794
P D+Y+ +I + ++ M NK+ S + ++ LA + + RK+VKQT+MT
Sbjct: 563 PQDIYTVVLDIVISKIKNDMDNGGNKNESTNFLNKSELANYCFKYNLLKRKVVKQTIMTI 622
Query: 795 VYGVTFVGAREQIKRRLEEK-GHITDDRQLFAAACYAAKVTLTALGEIFEAARSIMGWLG 853
YGVT +GA+ Q+K +++ TD + + Y A ++ EIF+ A I W
Sbjct: 623 CYGVTSIGAKNQVKGKIQNMIAKDTDKNTINELSKYIANYIFESISEIFKRAMIIKKWFN 682
Query: 854 DCAKVIASENQPVRWTTPLGLPVVQPYCKNERHLIRTSLQVLALQREGN-LVKIRKQRTA 912
+ +KV N P+ W +P+GLP QPY R L+ T LQ +++ N L+ KQR
Sbjct: 683 NLSKVTNDLNIPITWISPIGLPCEQPYRLGTRILVNTPLQSVSVTSYKNSLLHKNKQRLG 742
Query: 913 FPPNFVHSLDGSHMMMTA 930
FPPNFVHSLD SH++MTA
Sbjct: 743 FPPNFVHSLDASHLIMTA 760
>gi|82706057|ref|XP_727223.1| DNA-dependent RNA polymerase [Plasmodium yoelii yoelii 17XNL]
gi|23482964|gb|EAA18788.1| DNA-dependent RNA polymerase-related [Plasmodium yoelii yoelii]
Length = 697
Score = 329 bits (843), Expect = 5e-87, Method: Compositional matrix adjust.
Identities = 190/554 (34%), Positives = 297/554 (53%), Gaps = 35/554 (6%)
Query: 395 PAFRHRFKTILKHPGQKTTKRYGVV----ECDPLVLEGLDRSAKHMLIPYVPMLVPPKKW 450
P F H + K YGV+ C +L S H+ + Y+PM+ PKKW
Sbjct: 76 PVFVHSYI-------WKNNNWYGVIHMRESCANFLLNNAINS--HVPLNYLPMICKPKKW 126
Query: 451 KGYNKGGYLFLPSYVMRTHGSRKQQEALKSVTGNCMKKVFEALDTLGSTKWRVNKQVLSV 510
+ ++GG L L + +R + + L ++ M ++ + +G+ W+VNK++L
Sbjct: 127 EN-DQGGMLLLKNNFIRYN-----IKPLFNLNVCDMSRIKNIVSEIGNVGWKVNKEILHY 180
Query: 511 LESIWVSGGNIAGLVDRNDVLIPEKPLSEDMTEVQKWKWSVRKAK----KINQERHSQRC 566
+E +++G I + + +P ++ + K ++N+ S+R
Sbjct: 181 IEYAYMNGKTIGKIPLNKNYNLPNNIDLKNNNNNNEEIKKYYLLKEEITRLNKCLISERP 240
Query: 567 DTELKLSVARRMKDEEGFYYPHNLDFRGRAYPMHPHLNHLSSDVCRGVLEFAEGRPLGKS 626
KL+VA+ K E Y+PHN+DFRGR YP+ PHL+H+ D+CR ++ F+ G +G +
Sbjct: 241 TFLQKLAVAKTFKKNEQIYFPHNIDFRGRMYPLSPHLHHMGDDICRSLIVFSNGEEIGPN 300
Query: 627 GLRWLKIHLANLFSGGVEKLSHDGRLAFVENHLYEIFDSAENPINGSRWWLTAEDPFQCL 686
GL WLK+HLAN F G +KL+ R+ +V+ ++ I ENP +W A++P+Q L
Sbjct: 301 GLYWLKVHLANNF--GKDKLNFKKRIEWVDQNINNIKKLKENPFENLEFWGLADNPWQAL 358
Query: 687 AACINLSEALKSSSPHSVISHLPIHQDGSCNGLQHYAALGRNTLEAAAVNLVAGEKPADV 746
A I+L AL SS+P S++PI QDG+CNGLQHYAALG++ AVN++ ++P D+
Sbjct: 359 AVSIDLINALNSSNPSKYKSNIPIQQDGTCNGLQHYAALGKDKDGGRAVNILPSDEPQDI 418
Query: 747 YSEIAVRVHEIMKRD-SNKDPSKHPQALLAK-------ILIDQVDRKLVKQTVMTSVYGV 798
Y+ + V +K D N D +L K + + RK+VKQT+MT YGV
Sbjct: 419 YTVVLDIVINKIKNDIDNGDNKNENTNILTKSELANYCFKYNLLKRKVVKQTIMTICYGV 478
Query: 799 TFVGAREQIKRRLEEK-GHITDDRQLFAAACYAAKVTLTALGEIFEAARSIMGWLGDCAK 857
T +GA+ Q+K +++ TD + + Y A ++ EIF+ A I W + +K
Sbjct: 479 TSIGAKNQVKGKIQNMIAKDTDKNTINELSRYIANYIFESISEIFKRAMIIKKWFNNLSK 538
Query: 858 VIASENQPVRWTTPLGLPVVQPYCKNERHLIRTSLQVLALQREGN-LVKIRKQRTAFPPN 916
+ N P+ W +P+GLP QPY R L+ T LQ +++ N L+ KQR FPPN
Sbjct: 539 ITNDLNIPITWISPIGLPCEQPYRLGTRILVNTPLQSVSVTSYKNSLIHKNKQRLGFPPN 598
Query: 917 FVHSLDGSHMMMTA 930
FVHSLD SH++MTA
Sbjct: 599 FVHSLDASHLIMTA 612
>gi|156098707|ref|XP_001615369.1| DNA-dependent RNA polymerase [Plasmodium vivax Sal-1]
gi|148804243|gb|EDL45642.1| DNA-dependent RNA polymerase, putative [Plasmodium vivax]
Length = 1306
Score = 328 bits (841), Expect = 9e-87, Method: Compositional matrix adjust.
Identities = 186/541 (34%), Positives = 307/541 (56%), Gaps = 34/541 (6%)
Query: 416 YGVVECDPLVLEGLDRSAKHMLIP--YVPMLVPPKKWKGYNKGGYLFLPSYVMRTHGSRK 473
YGV+ L +A + IP ++PM+ PKKW +++GG L L + +R +
Sbjct: 689 YGVIHMRECCANYLLNNAINSHIPLNHLPMISKPKKWT-HSEGGMLLLKNNFIRCN---- 743
Query: 474 QQEALKSVTGNCMKKVFEALDTLGSTKWRVNKQVLSVLESIWVSGGNIAGLVDRNDVLIP 533
+ L ++ ++++ + +G+ +W VN+++L ++E + G I + + + +P
Sbjct: 744 -VKPLFNIDVCNLERIKSVVSQMGNVRWEVNEEILHLIEYAYNKGITIGNIPRKQNYSLP 802
Query: 534 EKP---LSEDMTEVQKWKWSVRKAKKINQERHSQRCDTELKLSVARRMKDEEGFYYPHNL 590
P +++ +++K+ + ++N+ S+R K+++A+ +K+ + Y+PHN+
Sbjct: 803 SGPSHTAKQNVEDIKKYYLLREEISRLNKCLISERPTFLQKIAIAKTLKNCKVIYFPHNI 862
Query: 591 DFRGRAYPMHPHLNHLSSDVCRGVLEFAEGRPLGKSGLRWLKIHLANLFSGGVEKLSHDG 650
DFRGR YP+ PHL+H+S D+CR ++ F + +G GL WLKIHLAN F G +KL+ +
Sbjct: 863 DFRGRMYPLSPHLHHMSDDICRSLITFHDREEIGPRGLFWLKIHLANNF--GKDKLTFEQ 920
Query: 651 RLAFVENHLYEIFDSAENPINGSRWWLTAEDPFQCLAACINLSEALKSSSPHSVISHLPI 710
R+ +V+++L I +ENP +W TAE P+Q L+ ++L+ AL+ P S++P+
Sbjct: 921 RINWVDSNLGNIKRLSENPFQHVDFWSTAEKPWQALSVSMDLTRALECPDPSKYRSNIPV 980
Query: 711 HQDGSCNGLQHYAALGRNTLEAAAVNLVAGEKPADVYSEIAVRVHEIMKRD--------- 761
QDG+CNGLQHYAALGR+ AVN++ ++P D+Y+ + V +K D
Sbjct: 981 QQDGTCNGLQHYAALGRDYDGGKAVNIIPSDEPQDIYTVVLEIVRSKVKADLDGAASPPK 1040
Query: 762 -----SNKDPSKHP---QALLAKIL--IDQVDRKLVKQTVMTSVYGVTFVGAREQIKRRL 811
S+ P+ P + LAK D + RK+VKQT+MT YGVT VGA++Q+K ++
Sbjct: 1041 GDRGKSSGTPNCAPPRCREHLAKCCFQFDLLKRKVVKQTIMTICYGVTSVGAKDQVKGKI 1100
Query: 812 EE-KGHITDDRQLFAAACYAAKVTLTALGEIFEAARSIMGWLGDCAKVIASENQPVRWTT 870
+ + + + + + Y A ++ EIF+ A I W + +KV N PV W +
Sbjct: 1101 QSMTTKVLEKKTINQLSQYIANYIFESISEIFKRAMIIKKWFNNLSKVTNELNIPVTWLS 1160
Query: 871 PLGLPVVQPYCKNERHLIRTSLQ-VLALQREGNLVKIRKQRTAFPPNFVHSLDGSHMMMT 929
P+GLP QPY R L+ T LQ V + + +L+ KQR FPPNFVHSLD SH+MMT
Sbjct: 1161 PIGLPCEQPYRLGHRILVNTPLQSVSVISYQNSLLHKNKQRLGFPPNFVHSLDASHLMMT 1220
Query: 930 A 930
A
Sbjct: 1221 A 1221
>gi|428673226|gb|EKX74139.1| DNA-dependent RNA polymerase domain containing protein [Babesia equi]
Length = 1194
Score = 325 bits (833), Expect = 7e-86, Method: Compositional matrix adjust.
Identities = 201/574 (35%), Positives = 309/574 (53%), Gaps = 42/574 (7%)
Query: 395 PAFRHRFKTILKHPGQKTTKRYGVVECDPLVLEGLDRSAKHML-IPYVPMLVPPKKWKGY 453
PAF H+ IL++ G +T + EC L L D A+ ++ + +PM+ PK W
Sbjct: 569 PAFVHK---ILRN-GVRTYGTLEMKECCMLKLR--DVVARGLINLSALPMICEPKPWVTV 622
Query: 454 NKGGYLFLPSYVMRTHGSRKQQEALKSVTGNCMKKVFEALDTLGSTKWRVNKQVLSVLES 513
++GG L L Y +RT A + + VF ++ G W++N VL VL+
Sbjct: 623 SQGGSLILKHYFIRT-----TNRASFDIRVFDLSNVFSITNSFGKVPWKINAGVLDVLKK 677
Query: 514 IWVSGGNI---AGLVDRNDVLIPEKPLSEDMTEVQ-----KWKWSVRKAKKINQERHSQR 565
+W + ++ A L D++ + EK +++ ++ + K +W+ + K S+
Sbjct: 678 LWDADSSVPMRAYLPDKS--CLKEKGETKNTSDSKEIYNPKNRWANEEDKVRIANAISEC 735
Query: 566 CDTELKLSVARRMKDEEGFYYPHNLDFRGRAYPMHPHLNHLSSDVCRGVLEFAEGRPLGK 625
E ++ +A E+ Y P ++DFRGR YP+ P+LNH D CR +L F+E RPLG+
Sbjct: 736 SLFERRIYIAENFIHEQKLYLPASIDFRGRLYPLSPYLNHACDDACRSLLTFSEVRPLGE 795
Query: 626 SGLRWLKIHLANLFSGGVEKLSHDGRLAFVENHLYEIFDSAENPINGSR--WWLTAEDPF 683
GL WLK+H++NL+ G++KL D R+ +V+N + I +NP + S +W AE PF
Sbjct: 796 RGLFWLKVHVSNLY--GIDKLPFDDRIVWVDNQMSSIEKLVKNPFSDSSQDFWSKAEKPF 853
Query: 684 QCLAACINLSEALKSSSPHSVISHLPIHQDGSCNGLQHYAALGRNTLEAAAVNLVAGEKP 743
Q A+ L A+ S PH +S +P+ QDGSCNGLQHY+ALGR+ +VNL+ +KP
Sbjct: 854 QFFASACELVSAIHSKDPHKYLSSIPVQQDGSCNGLQHYSALGRDYNGGLSVNLIDTDKP 913
Query: 744 ADVYSEIAVRVHEIMKRDSNKDPSKHPQALL-------AKILIDQ--VDRKLVKQTVMTS 794
DVY ++ + V + R+ + P + AK+ ID + RK VKQTVMT
Sbjct: 914 QDVYKKVLLEVISKVTREFQRAPPTSGAVGIANTPYDCAKLCIDHGLLKRKTVKQTVMTI 973
Query: 795 VYGVTFVGAREQIKRRLEEKGHITDDRQLFA---AACYAAKVTLTALGEIFEAARSIMGW 851
YGVT +GA +QI +L+++ + D +A A Y A ++ IF A +I W
Sbjct: 974 CYGVTRMGAIDQIDNKLKDEASL-DHLHPYARRRLATYIAGKVFGSIKTIFNEAMNIKKW 1032
Query: 852 LGDCAKVIASENQPVRWTTPLGLPVVQPYCKNERHLIRTSLQVLAL--QREGNLVKIRKQ 909
L + N PV W +P+GLP QPYCK + ++ T +Q + + + +L K R+Q
Sbjct: 1033 LDGISSAHTKFNIPVTWISPIGLPCEQPYCKVDSSVLHTEMQAMRIVDLKSAHLDK-RRQ 1091
Query: 910 RTAFPPNFVHSLDGSHMMMTAVACRDAGLHFAGL 943
R AFPPNF+HSLD SH+M TA + FA +
Sbjct: 1092 RMAFPPNFIHSLDASHLMFTAREIFKSCTSFASV 1125
>gi|84998152|ref|XP_953797.1| DNA-directed RNA polymerase (mitochondrial precursor) [Theileria
annulata]
gi|65304794|emb|CAI73119.1| DNA-directed RNA polymerase (mitochondrial precursor), putative
[Theileria annulata]
Length = 1222
Score = 325 bits (833), Expect = 8e-86, Method: Compositional matrix adjust.
Identities = 191/561 (34%), Positives = 308/561 (54%), Gaps = 51/561 (9%)
Query: 396 AFRHRFKTILKHPGQKTTKRYGVVEC-DPLVLEGLDRSAKHML-IPYVPMLVPPKKWKGY 453
AFRH +L G KT +GV+E + +L+ D AK ++ + +PM+ PK+W
Sbjct: 606 AFRH----VLLRQGVKT---FGVLEMRESCMLKLRDFVAKSLVSLAALPMVCKPKRWINA 658
Query: 454 NKGGYLFLPSYVMRTHGSRKQQEALKSVTGNCMKKVFEALDTLGSTKWRVNKQVLSVLES 513
GG + L +R GS+ L V + VF+ ++ W +N+Q+L++++
Sbjct: 659 TTGGSILLKHNFIR--GSK-----LNEVKVYDLGNVFDIVNKFSQVPWIINRQMLNLIKH 711
Query: 514 IWVSGGNIAGLVDRNDVLIPEK-PLSEDMTEVQKWKWSVRKAKKINQERHSQRCDTELKL 572
I S + D+ I + P++ ++ S+ ++ S+ ++
Sbjct: 712 ICSS---------QTDMQIKQHLPVNTTTNIMENINTSISNITSLSSNELSELSLFLRRI 762
Query: 573 SVARRMKDEEGFYYPHNLDFRGRAYPMHPHLNHLSSDVCRGVLEFAEGRPLGKSGLRWLK 632
+A +E+ Y P N+DFRGR YP+ P+LNH++ D+CR +L F+E R LG GL WLK
Sbjct: 763 KIADAFANEKRLYMPLNIDFRGRMYPLSPYLNHMNDDLCRSLLLFSEKRKLGNRGLFWLK 822
Query: 633 IHLANLFSGGVEKLSHDGRLAFVENHLYEIFDSAENPIN--GSRWWLTAEDPFQCLAACI 690
+H +N++ G +K+S + R+ +V+ H+ I + ++P +W+ A+ PFQ A+C+
Sbjct: 823 VHCSNMY--GNDKISFEDRVKWVDEHIAIITELVKSPFKDFNQNFWVKADKPFQFFASCV 880
Query: 691 NLSEALKSSSPHSVISHLPIHQDGSCNGLQHYAALGRNTLEAAAVNLVAGEKPADVYSEI 750
L A++S++P ++HLPI QDG+CNGLQHYAALG + A VNLV E+P D+Y+ I
Sbjct: 881 ELVRAIESNNPDEYMTHLPIQQDGTCNGLQHYAALGLDERGAKYVNLVNSEQPQDLYTHI 940
Query: 751 AVRVHEIMKRDSNKDPSKHPQALL-----------------AKILIDQ--VDRKLVKQTV 791
+ + + D N S L ++I ++ + RK++KQTV
Sbjct: 941 LQLIIQKVYNDLNYTNSTVSNNTLVTSGNGKLSNVESNKKYSEICVNNNILCRKVIKQTV 1000
Query: 792 MTSVYGVTFVGAREQIKRRLEEKGHIT--DDRQLFAAACYAAKVTLTALGEIFEAARSIM 849
MT YGVT +GA +Q++ +L++ I+ +L A Y A L+++ IF A SI
Sbjct: 1001 MTICYGVTRIGAIDQVESKLKDIKKISYLSPSELRGLAAYLANKILSSISTIFSEAMSIK 1060
Query: 850 GWLGDCAKVIASENQPVRWTTPLGLPVVQPYCKNERHLIRTSLQVLALQREGNLVKIRKQ 909
WL + + V N PV W +P+GLP QPYCK+ ++RT LQ + + + + V R+Q
Sbjct: 1061 NWLDEISCVHNKFNIPVTWISPIGLPCEQPYCKSVTKVVRTPLQAINVSKYVSSVDKRRQ 1120
Query: 910 RTAFPPNFVHSLDGSHMMMTA 930
+ AFPPNF+HSLD SH+MMTA
Sbjct: 1121 KLAFPPNFIHSLDASHLMMTA 1141
>gi|9857985|gb|AAG00950.1|AF273674_1 DNA-dependent RNA polymerase [Plasmodium falciparum]
Length = 1503
Score = 322 bits (826), Expect = 4e-85, Method: Compositional matrix adjust.
Identities = 185/573 (32%), Positives = 297/573 (51%), Gaps = 63/573 (10%)
Query: 411 KTTKRYGVVE----CDPLVLEGLDRSAKHMLIPYVPMLVPPKKWKGYNKGGYLFLPSYVM 466
K YGV+ C +L S H+ + Y+PM+ PK+W+ + +GG L L + +
Sbjct: 856 KNNNWYGVIHMRECCANYLLNNAINS--HIPLNYLPMICKPKRWENF-EGGMLLLKNSFI 912
Query: 467 RTHGSRKQQEALKSVTGNCMKKVFEALDTLGSTKWRVNKQVLSVLESIWVSGGNIAGLVD 526
R + + L ++ + ++ + +G+ W++NK++L +E ++ G I +
Sbjct: 913 RCN-----IKPLFNLNVCNLNRIKNIVSEIGNVGWKINKEILHYIEYAYIHGITIGKIPL 967
Query: 527 RNDVLIPE--KPLSEDMTEVQKWKWSVRKAKKINQERHSQRCDTELKLSVARRMKDEEGF 584
+ +P+ ++ E++K+ + ++N+ S+R KL+VA+ KD +
Sbjct: 968 YKNYTLPKYINLKEQNNEEIKKYLLLKEEINRLNKCLISERPTFLQKLAVAKTFKDNDII 1027
Query: 585 YYPHNLDFRGRAYPMHPHLNHLSSDVCRGVLEFAEGRPLGKSGLRWLKIHLANLFSGGVE 644
Y+PHN+DFRGR YP+ PHL+H+S D+CR ++ FAE + +G GL WLKIHLAN F G +
Sbjct: 1028 YFPHNIDFRGRMYPLSPHLHHMSDDICRSLITFAEQKEIGNKGLFWLKIHLANTF--GKD 1085
Query: 645 KLSHDGRLAFVENHLYEIFDSAENPINGSRWWLTAEDPFQCLAACINLSEALKSSSPHSV 704
KLS R+ +V+ ++ I + P + +W AE P+Q LA I+L AL+S +
Sbjct: 1086 KLSFQKRIQWVDQNINNIKKLTQQPFDNIEFWNMAEKPWQALAVAIDLKNALESPNASKY 1145
Query: 705 ISHLPIHQDGSCNGLQHYAALGRNTLEAAAVNLVAGEKPADVYSEIAVRVHEIMKRDSNK 764
S +PI QDG+CNGLQHYAALG++ AVN++ ++P D+YS + V +K D
Sbjct: 1146 KSSIPIQQDGTCNGLQHYAALGKDKYGGKAVNIIPSDEPQDIYSVVLDIVISKIKNDLMN 1205
Query: 765 DPSKHPQALLAKIL---------------------------------------------I 779
+ H +++ +
Sbjct: 1206 ISNGHHNNIISFSINENIKTNKKYNNNINNNINNYNNNNHNRNSNSNVNKNELASYCFKF 1265
Query: 780 DQVDRKLVKQTVMTSVYGVTFVGAREQIKRRLEEK-GHITDDRQLFAAACYAAKVTLTAL 838
D + RK+VKQT+MT YGVT +GA+ Q+K +++ G D + + Y A ++
Sbjct: 1266 DLLKRKVVKQTIMTICYGVTSIGAKNQVKGKIQTMIGKELDKNIINKLSQYIANYIFESI 1325
Query: 839 GEIFEAARSIMGWLGDCAKVIASENQPVRWTTPLGLPVVQPYCKNERHLIRTSLQVLA-L 897
EIF+ A I W + +KV N P+ W +P+GLP QPY R L+ T LQ ++ +
Sbjct: 1326 SEIFKRAMIIKKWFNNLSKVTNELNIPITWISPIGLPCEQPYRLGNRILVNTPLQSISVI 1385
Query: 898 QREGNLVKIRKQRTAFPPNFVHSLDGSHMMMTA 930
+ + + KQR FPPNFVHSLD SH+MMTA
Sbjct: 1386 SYKNSQLHKNKQRLGFPPNFVHSLDASHLMMTA 1418
>gi|71033709|ref|XP_766496.1| DNA-directed RNA polymerase [Theileria parva strain Muguga]
gi|68353453|gb|EAN34213.1| DNA-directed RNA polymerase, putative [Theileria parva]
Length = 1225
Score = 322 bits (826), Expect = 5e-85, Method: Compositional matrix adjust.
Identities = 191/575 (33%), Positives = 310/575 (53%), Gaps = 52/575 (9%)
Query: 396 AFRHRFKTILKHPGQKTTKRYGVVEC-DPLVLEGLDRSAKHML-IPYVPMLVPPKKWKGY 453
AFRH +L G KT +GV+E + +L+ D AK ++ + +PM+ PKKW
Sbjct: 608 AFRH----VLLRQGVKT---FGVLEMRESCMLQLRDFVAKSLVSLAALPMVCRPKKWINA 660
Query: 454 NKGGYLFLPSYVMRTHGSRKQQEALKSVTGNCMKKVFEALDTLGSTKWRVNKQVLSVLES 513
GG + L +R GS+ L V ++ VF+ ++ W +N Q+L +++
Sbjct: 661 TTGGSILLKHNFIR--GSK-----LNEVKVYNLENVFDIVNKFSQVPWIINSQMLKLIKH 713
Query: 514 IWVSGGNIAGLVDRNDVLIPEK-PLSEDMTEVQKWKWSVRKAKKINQERHSQRCDTELKL 572
I S + D+ I + P++ ++ ++ ++ ++ S+ ++
Sbjct: 714 ICNS---------QTDMPIKQHLPVNTNINLMENINTTISNITSLSSNELSELSLFLRRI 764
Query: 573 SVARRMKDEEGFYYPHNLDFRGRAYPMHPHLNHLSSDVCRGVLEFAEGRPLGKSGLRWLK 632
+A +E Y P N+DFRGR YP+ P+LNH++ D+CR +L F+E R LG GL WLK
Sbjct: 765 KIADAFANERRLYMPLNIDFRGRMYPLSPYLNHMNDDLCRSLLLFSEKRKLGNRGLFWLK 824
Query: 633 IHLANLFSGGVEKLSHDGRLAFVENHLYEIFDSAENPIN--GSRWWLTAEDPFQCLAACI 690
+H +N++ G +K+S + R+ +V+ H+ I + ++P +W+ A+ PFQ A+C+
Sbjct: 825 VHSSNMY--GNDKISFEDRVKWVDEHISIITELVKSPFKDFNQNFWVKADKPFQFFASCV 882
Query: 691 NLSEALKSSSPHSVISHLPIHQDGSCNGLQHYAALGRNTLEAAAVNLVAGEKPADVYSEI 750
L A++S++P ++HLPI QDG+CNGLQHYAALG + A VNLV E P D+Y+ I
Sbjct: 883 ELVRAIESNNPEDYMTHLPIQQDGTCNGLQHYAALGLDEKGAKYVNLVDCEHPQDLYTHI 942
Query: 751 ------------------AVRVHEIMKRDSNKDPSKHPQALLAKILIDQ--VDRKLVKQT 790
V + ++ + K + ++I ++ + RK++KQT
Sbjct: 943 LQLIIQKVYNDLNYTSGSGVSNNSLVTTGNGKLSNVESNKKYSEICVNNNILCRKVIKQT 1002
Query: 791 VMTSVYGVTFVGAREQIKRRLEEKGHIT--DDRQLFAAACYAAKVTLTALGEIFEAARSI 848
VMT YGVT +GA +Q++ +L++ I+ +L A Y A L+++ IF A SI
Sbjct: 1003 VMTICYGVTRIGAIDQVESKLKDIKKISYLSPSELRGLAAYLANKILSSISTIFSEAMSI 1062
Query: 849 MGWLGDCAKVIASENQPVRWTTPLGLPVVQPYCKNERHLIRTSLQVLALQREGNLVKIRK 908
WL + + V N PV W +P+GLP QPYCK+ ++RT LQ + + + + V R+
Sbjct: 1063 KNWLDEISCVHNKFNIPVTWISPIGLPCEQPYCKSVTKVVRTPLQAINVSKYVSSVDKRR 1122
Query: 909 QRTAFPPNFVHSLDGSHMMMTAVACRDAGLHFAGL 943
Q+ AFPPNF+HSLD SH+MMTA FA +
Sbjct: 1123 QKLAFPPNFIHSLDASHLMMTATEVFKHTQSFASV 1157
>gi|124804211|ref|XP_001347935.1| DNA-dependent RNA polymerase [Plasmodium falciparum 3D7]
gi|23496188|gb|AAN35848.1|AE014839_57 DNA-dependent RNA polymerase [Plasmodium falciparum 3D7]
Length = 1531
Score = 322 bits (826), Expect = 5e-85, Method: Compositional matrix adjust.
Identities = 185/573 (32%), Positives = 297/573 (51%), Gaps = 63/573 (10%)
Query: 411 KTTKRYGVVE----CDPLVLEGLDRSAKHMLIPYVPMLVPPKKWKGYNKGGYLFLPSYVM 466
K YGV+ C +L S H+ + Y+PM+ PK+W+ + +GG L L + +
Sbjct: 884 KNNNWYGVIHMRECCANYLLNNAINS--HIPLNYLPMICKPKRWENF-EGGMLLLKNSFI 940
Query: 467 RTHGSRKQQEALKSVTGNCMKKVFEALDTLGSTKWRVNKQVLSVLESIWVSGGNIAGLVD 526
R + + L ++ + ++ + +G+ W++NK++L +E ++ G I +
Sbjct: 941 RCN-----IKPLFNLNVCNLNRIKNIVSEIGNVGWKINKEILHYIEYAYIHGITIGKIPL 995
Query: 527 RNDVLIPE--KPLSEDMTEVQKWKWSVRKAKKINQERHSQRCDTELKLSVARRMKDEEGF 584
+ +P+ ++ E++K+ + ++N+ S+R KL+VA+ KD +
Sbjct: 996 YKNYTLPKYINLKEQNNEEIKKYLLLKEEINRLNKCLISERPTFLQKLAVAKTFKDNDII 1055
Query: 585 YYPHNLDFRGRAYPMHPHLNHLSSDVCRGVLEFAEGRPLGKSGLRWLKIHLANLFSGGVE 644
Y+PHN+DFRGR YP+ PHL+H+S D+CR ++ FAE + +G GL WLKIHLAN F G +
Sbjct: 1056 YFPHNIDFRGRMYPLSPHLHHMSDDICRSLITFAEQKEIGNKGLFWLKIHLANTF--GKD 1113
Query: 645 KLSHDGRLAFVENHLYEIFDSAENPINGSRWWLTAEDPFQCLAACINLSEALKSSSPHSV 704
KLS R+ +V+ ++ I + P + +W AE P+Q LA I+L AL+S +
Sbjct: 1114 KLSFQKRIQWVDQNINNIKKLTQQPFDNIEFWNMAEKPWQALAVAIDLKNALESPNASKY 1173
Query: 705 ISHLPIHQDGSCNGLQHYAALGRNTLEAAAVNLVAGEKPADVYSEIAVRVHEIMKRDSNK 764
S +PI QDG+CNGLQHYAALG++ AVN++ ++P D+YS + V +K D
Sbjct: 1174 KSSIPIQQDGTCNGLQHYAALGKDKYGGKAVNIIPSDEPQDIYSVVLDIVISKIKNDLMN 1233
Query: 765 DPSKHPQALLAKIL---------------------------------------------I 779
+ H +++ +
Sbjct: 1234 ISNGHHNNIISFSINENIKTNKKYNNNINNNINNYNNNNHNRNSNSNVNKNELASYCFKF 1293
Query: 780 DQVDRKLVKQTVMTSVYGVTFVGAREQIKRRLEEK-GHITDDRQLFAAACYAAKVTLTAL 838
D + RK+VKQT+MT YGVT +GA+ Q+K +++ G D + + Y A ++
Sbjct: 1294 DLLKRKVVKQTIMTICYGVTSIGAKNQVKGKIQTMIGKELDKNIINKLSQYIANYIFESI 1353
Query: 839 GEIFEAARSIMGWLGDCAKVIASENQPVRWTTPLGLPVVQPYCKNERHLIRTSLQVLA-L 897
EIF+ A I W + +KV N P+ W +P+GLP QPY R L+ T LQ ++ +
Sbjct: 1354 SEIFKRAMIIKKWFNNLSKVTNELNIPITWISPIGLPCEQPYRLGNRILVNTPLQSISVI 1413
Query: 898 QREGNLVKIRKQRTAFPPNFVHSLDGSHMMMTA 930
+ + + KQR FPPNFVHSLD SH+MMTA
Sbjct: 1414 SYKNSQLHKNKQRLGFPPNFVHSLDASHLMMTA 1446
>gi|221056236|ref|XP_002259256.1| dna-dependent rna polymerase [Plasmodium knowlesi strain H]
gi|193809327|emb|CAQ40029.1| dna-dependent rna polymerase, putative [Plasmodium knowlesi strain H]
Length = 1348
Score = 322 bits (825), Expect = 6e-85, Method: Compositional matrix adjust.
Identities = 186/559 (33%), Positives = 308/559 (55%), Gaps = 58/559 (10%)
Query: 416 YGVVE----CDPLVLEGLDRSAKHMLIPYVPMLVPPKKWKGYNKGGYLFLPSYVMRTHGS 471
YGV+ C +L S H+ + ++PM+ PKKW + +GG + L + +R +
Sbjct: 719 YGVIHMRECCANYLLNNAINS--HIPLNHLPMISKPKKWT-HAEGGMILLKNNFIRCN-- 773
Query: 472 RKQQEALKSVTGNCMKKVFEALDTLGSTKWRVNKQVLSVLESIWVSGGNIAGLVDRNDVL 531
+ L ++ ++++ + +G+ +W++N+++L+++E + G I + + +
Sbjct: 774 ---VKPLFNIDVCNLERIKNIVSQIGNVRWKINEEILNLIEYAYAQGITIGNIPRKQNYD 830
Query: 532 IPEKPLS---EDMTEVQKWKWSVRKAKKINQERHSQRCDTELKLSVARRMKDEEGFYYPH 588
+P P +D+ +++K+ + ++N+ S+R K++VA+ +K+ E Y+PH
Sbjct: 831 LPNGPSDMGRKDVEDIKKYYLLKEEISRLNKCLISERPTFLQKIAVAKTLKNCEMIYFPH 890
Query: 589 NLDFRGRAYPMHPHLNHLSSDVCRGVLEFAEGRPLGKSGLRWLKIHLANLFSGGVEKLSH 648
N+DFRGR YP+ PHL+H+S D+CR ++ F + +G GL WLKIHL+N F G +KL+
Sbjct: 891 NIDFRGRMYPLSPHLHHMSDDICRSLITFHDKEEIGPRGLFWLKIHLSNNF--GKDKLNF 948
Query: 649 DGRLAFVENHLYEIFDSAENPINGSRWWLTAEDPFQCLAACINLSEALKSSSPHSVISHL 708
+ R+ +V+++L I +ENP +W AE P+Q L+ ++L+ AL+ P S++
Sbjct: 949 EERIKWVDDNLDNIKKLSENPFEHLDFWNMAEKPWQALSVSMDLTRALECPDPSKYRSNI 1008
Query: 709 PIHQDGSCNGLQHYAALGRNTLEAAAVNLVAGEKPADVYSEIAVRVHEIMKR--DSNKDP 766
PI QDG+CNGLQHYAALGR+ AVN++ ++P D+Y+ + EI+K ++ D
Sbjct: 1009 PIQQDGTCNGLQHYAALGRDYDGGKAVNIIPSDEPQDIYTVVL----EIVKSKISADLDG 1064
Query: 767 SKHPQAL-------------------------------LAKILI--DQVDRKLVKQTVMT 793
+ P + LAK D + RK+VKQT+MT
Sbjct: 1065 TATPTTMGPTNSTSGSINSINSGNGGNAAMSTPACRGELAKYCFKYDLLKRKVVKQTIMT 1124
Query: 794 SVYGVTFVGAREQIKRRLEEK-GHITDDRQLFAAACYAAKVTLTALGEIFEAARSIMGWL 852
YGVT VGA++Q+K +++ + D + + Y A ++ EIF+ A I W
Sbjct: 1125 ICYGVTSVGAKDQVKGKIQNMISKVLDKNIINQLSQYIANYIFESISEIFKRAMIIKKWF 1184
Query: 853 GDCAKVIASENQPVRWTTPLGLPVVQPYCKNERHLIRTSLQ-VLALQREGNLVKIRKQRT 911
+ +KV N PV W +P+GLP QPY +R L+ T LQ V + + +L+ KQR
Sbjct: 1185 NNLSKVTNELNIPVTWLSPIGLPCEQPYRLGQRILVNTPLQSVSVISYKNSLLHKNKQRL 1244
Query: 912 AFPPNFVHSLDGSHMMMTA 930
FPPNFVHSLD SH+MMTA
Sbjct: 1245 GFPPNFVHSLDASHLMMTA 1263
>gi|224116234|ref|XP_002331994.1| predicted protein [Populus trichocarpa]
gi|222832118|gb|EEE70595.1| predicted protein [Populus trichocarpa]
Length = 381
Score = 322 bits (825), Expect = 7e-85, Method: Compositional matrix adjust.
Identities = 161/343 (46%), Positives = 231/343 (67%), Gaps = 28/343 (8%)
Query: 159 YKRIKLQEYREMKKRKFNLLRRRQVKQETEAWERMVDEYKELEAKMIEKRLAPNLPHIKG 218
+ R +L+ + RK +LRRRQVK E EAWE EYKEL M E +LAPNLP++K
Sbjct: 66 FSRRRLRANPGIGSRKHRVLRRRQVKIEAEAWELATKEYKELLKDMCEHKLAPNLPYMKS 125
Query: 219 LFLGWFGPLSEAIEREQKMQRTKKQKAAYAPHIELLPADKVAVIVMHKMMGLVMAGHEDR 278
LFLGWF P +AI +EQ++ RT K + YA + +LLPADK++VI MH++ +VM G +
Sbjct: 126 LFLGWFEPFRDAIAKEQELIRTGKSRQGYALYFDLLPADKMSVIAMHQLAAMVMTGGQHG 185
Query: 279 CVQVVQAAVHIGMAIEQEIRIHSFLEKTKNYKRKKIIADTEEVLSKEKELLRKRVNSLIK 338
C +VV AA IG AIEQE +++ L RK+V LIK
Sbjct: 186 CARVVTAACMIGDAIEQE-KVNPLLS-------------------------RKKVTDLIK 219
Query: 339 SKRVMEAQKLLKN-EETKPWGRDTQAKLGSRLVELLIETAYVQHPVNPADYSPPDVRPAF 397
+++ +K++K +++KPW D +AK+GSRL+ELL++TAY+Q P + + + RPAF
Sbjct: 220 KQKLPAVRKIVKGKDDSKPWNADARAKVGSRLIELLLQTAYIQPPCDQLADTSSEPRPAF 279
Query: 398 RHRFKTILKHPGQKTTKRYGVVECDPLVLEGLDRSAKHMLIPYVPMLVPPKKWKGYNKGG 457
H F+T+ + +K K+YGV++CDPLVL+GL+++A+HM+IPY+PMLVPP +W+GY+KG
Sbjct: 280 VHTFRTV-SYENKKGAKKYGVIQCDPLVLKGLEKTARHMVIPYMPMLVPPLRWRGYDKGA 338
Query: 458 YLFLPSYVMRTHGSRKQQEALKSVTGNCMKKVFEALDTLGSTK 500
+LFLPSYVMR HG+++Q+EA+K ++ VFEALDTLG+TK
Sbjct: 339 HLFLPSYVMRIHGAKQQREAVKRAPRKQLQPVFEALDTLGNTK 381
>gi|389583795|dbj|GAB66529.1| DNA-dependent RNA polymerase [Plasmodium cynomolgi strain B]
Length = 1486
Score = 320 bits (821), Expect = 2e-84, Method: Compositional matrix adjust.
Identities = 184/561 (32%), Positives = 306/561 (54%), Gaps = 67/561 (11%)
Query: 416 YGVVECDPLVLEGLDRSAKHMLIP--YVPMLVPPKKWKGYNKGGYLFLPSYVMRTHGSRK 473
YGV+ L +A + IP ++PM+ PKKW +++GG + L + +R +
Sbjct: 862 YGVIHMRECCANYLLNNAINSHIPLNHLPMISKPKKWT-HSEGGMILLKNNFIRCN---- 916
Query: 474 QQEALKSVTGNCMKKVFEALDTLGSTKWRVNKQVLSVLESIWVSGGNIAGLVDRNDVLIP 533
+ L ++ ++++ + +G+ +W++N ++L ++E +++G I + + + ++P
Sbjct: 917 -VKPLFNIDVCNLERIKNIVSQIGNIRWKINDEILYLIEYAYMNGITIGNIPRKQNYVLP 975
Query: 534 EKPLSEDMT-----EVQKWKWSVRKAKKINQERHSQRCDTELKLSVARRMKDEEGFYYPH 588
PL DMT +++K+ + ++N +C L +A+ +K+ E Y+PH
Sbjct: 976 NSPL--DMTKKNADDIKKYYLLREEISRLN------KC-----LIMAKTLKNCEVIYFPH 1022
Query: 589 NLDFRGRAYPMHPHLNHLSSDVCRGVLEFAEGRPLGKSGLRWLKIHLANLFSGGVEKLSH 648
N+DFRGR YP+ PHL+H+S D+CR ++ F + +G GL WLK+HLAN F G +KL+
Sbjct: 1023 NIDFRGRMYPLSPHLHHMSDDICRSLITFHDKEEIGPRGLFWLKVHLANNF--GKDKLNF 1080
Query: 649 DGRLAFVENHLYEIFDSAENPINGSRWWLTAEDPFQCLAACINLSEALKSSSPHSVISHL 708
+ R+++V+ +L I +ENP +W AE P+Q L+ I+L++A++ P S++
Sbjct: 1081 EQRISWVDANLGNIKRLSENPFEHMEFWNLAEKPWQALSVAIDLTKAMQCPDPSKYRSNI 1140
Query: 709 PIHQDGSCNGLQHYAALGRNTLEAAAVNLVAGEKPADVYSEIAVRVHEIMKRDSN----- 763
P+ QDG+CNGLQHYAALGR+ AVN++ ++P D+Y+ + V ++ D +
Sbjct: 1141 PVQQDGTCNGLQHYAALGRDYDGGKAVNIIPSDEPQDIYTVVLEIVRSKIRADLDGAAVT 1200
Query: 764 ------------------------------KDPSKHPQALLAKIL--IDQVDRKLVKQTV 791
K S + + LA+ D + RK+VKQT+
Sbjct: 1201 PTGGSSGTSGGVSADSSSGVSGDISGGGAPKSSSTYSRGDLAQYCFQFDLLKRKVVKQTI 1260
Query: 792 MTSVYGVTFVGAREQIKRRLEEK-GHITDDRQLFAAACYAAKVTLTALGEIFEAARSIMG 850
MT YGVT VGA++Q+K +++ + D + + Y A ++ EIF+ A I
Sbjct: 1261 MTICYGVTSVGAKDQVKGKIQNMISKVVDKNAISQLSQYIANYIFESISEIFKRAMIIKK 1320
Query: 851 WLGDCAKVIASENQPVRWTTPLGLPVVQPYCKNERHLIRTSLQ-VLALQREGNLVKIRKQ 909
W + +KV N PV W +P+GLP QPY +R L+ T LQ V + + +L+ KQ
Sbjct: 1321 WFNNLSKVTNELNIPVTWLSPIGLPCEQPYRLGQRILVNTPLQSVSVISYQNSLLHKNKQ 1380
Query: 910 RTAFPPNFVHSLDGSHMMMTA 930
R FPPNFVHSLD SH+MMTA
Sbjct: 1381 RLGFPPNFVHSLDASHLMMTA 1401
>gi|426230933|ref|XP_004009513.1| PREDICTED: DNA-directed RNA polymerase, mitochondrial [Ovis aries]
Length = 981
Score = 320 bits (820), Expect = 2e-84, Method: Compositional matrix adjust.
Identities = 169/396 (42%), Positives = 243/396 (61%), Gaps = 21/396 (5%)
Query: 556 KINQERHSQRCDTELKLSVARRMKDEEGFYYPHNLDFRGRAYPMHPHLNHLSSDVCRGVL 615
++ +E S R D +LS+A+ +++ F+ PHN+DFRGR YP PH NHL SD+ R +L
Sbjct: 516 RVAREMQSLRADALYRLSLAQHLRNHV-FWLPHNMDFRGRTYPCSPHFNHLGSDLARALL 574
Query: 616 EFAEGRPLGKSGLRWLKIHLANLFSGGVEKLSHDGRLAFVENHLYEIFDSAENPINGSRW 675
EFA+GRPLG GL WLKIHL NL +G ++ S R + + + +I DSAE P+ G +W
Sbjct: 575 EFAQGRPLGPHGLDWLKIHLVNL-TGLKKRESLQTRRDYADAVMEDILDSAERPMTGRKW 633
Query: 676 WLTAEDPFQCLAACINLSEALKSSSPHSVISHLPIHQDGSCNGLQHYAALGRNTLEAAAV 735
W+ A++P+Q LA C+ +++ + S P + ISH P+HQ GLQHYAALGR++ A +V
Sbjct: 634 WMEADEPWQTLACCMEIAQVVHSPDPTTYISHFPVHQ-APGMGLQHYAALGRDSTGATSV 692
Query: 736 NLVAGEKPADVYSEIAVRVHEIMKRDSNKDPSKHPQALLAKILIDQVDRKLVKQTVMTSV 795
NL + P DVYSE+A +V K+D+ + +A++L + RK+VKQTVMT V
Sbjct: 693 NLSPSDLPQDVYSEVAAQVEVFRKQDAKQG------VRVAQVLEGFISRKVVKQTVMTVV 746
Query: 796 YGVTFVGAREQIKRRLEEKGHITDDRQLFA--AACYAAKVTLTALGEIFEAARSIMGWLG 853
YGVT GAR QI+RRL E + D Q F A+ Y + +L E+F RSI WL
Sbjct: 747 YGVT-RGARLQIERRLRE---LEDFPQEFVWEASHYLVRQVFNSLQEMFSGTRSIQRWLT 802
Query: 854 DCAKVIASENQPVRWTTPLGLPVVQPYCKNERHLIRT---SLQVLALQREGNLVK---IR 907
+ A++I+ V W TPLG+P++QPY ++ + ++R LQ L + +
Sbjct: 803 ESARLISLTGSAVEWITPLGVPIIQPYHRDSKVMVRAIKGGLQSLTFSSSVDTNQKPNTL 862
Query: 908 KQRTAFPPNFVHSLDGSHMMMTAVACRDAGLHFAGL 943
KQ+ FPPNF+HSLD +HMM+TA+ C GL F +
Sbjct: 863 KQKNGFPPNFIHSLDSTHMMLTALHCYRKGLTFVSV 898
>gi|83376020|gb|ABC17814.1| mitochondrial RNA polymerase [Tigriopus californicus]
Length = 939
Score = 318 bits (815), Expect = 1e-83, Method: Compositional matrix adjust.
Identities = 178/443 (40%), Positives = 261/443 (58%), Gaps = 36/443 (8%)
Query: 441 VPMLVPPKKWKGYNKGGYLFLPSYVMRTHGSRKQQEALKSV-TGNCMKKVFEALDTLGST 499
+PM+VPP+ W + GGYL + R R +EA+ + + N + +AL+ LGST
Sbjct: 506 LPMVVPPRPWVSDSSGGYLLHEVEMTR----RPVEEAVHTPRSANKLLPTLDALNQLGST 561
Query: 500 KWRVNKQVLSVLESIWVSGGNIAGLVDRNDVLIPEKPLS-------------EDMTEVQK 546
W +NK +L + ++ + R V IP P + DMT Q
Sbjct: 562 PWIINKPILECIVEVFRHPKKYGAYLKR--VGIPRHPENIEPPAEVRSKAKFRDMTRDQY 619
Query: 547 WKWSVRKAKK-----INQERHSQRCDTELKLSVARRMKDEEGFYYPHNLDFRGRAYPMHP 601
+ +A++ + E +S CDT +LS+A+ +D Y+PHN+DFRGR YP+ P
Sbjct: 620 SAFQQGQAQRQAFIQLQAESYSLWCDTLYRLSIAQHFQDRV-LYFPHNIDFRGRVYPIPP 678
Query: 602 HLNHLSSDVCRGVLEFAEGRPLGKSGLRWLKIHLANLFSGGVEKLSHDGRLAFVENHLYE 661
+LNH+ D+ R +L FAEG+PLG GL WLK+H NL SG +K S R+ + E++L
Sbjct: 679 YLNHMGCDLSRSLLVFAEGKPLGPKGLDWLKLHTVNL-SGLXKKSSIRERMQYAEDNLSL 737
Query: 662 IFDSAENPINGSRWWLTAEDPFQCLAACINLSEALKSSSPHSVISHLPIHQDGSCNGLQH 721
DSA +P G +WWL +E+P+Q L ACI L AL S+ P + +SHLPIHQDGSCNGLQH
Sbjct: 738 FLDSASDPFGGKKWWLESEEPWQTLGACIELRNALSSADPANYVSHLPIHQDGSCNGLQH 797
Query: 722 YAALGRNTLEAAAVNLVAGEKPADVYSEIAVRVHEIMKRDSNKDP-SKHPQALLAKILID 780
YAA+GR++L A VNL+ E P DVY EIA I++R ++D + HP A+L L
Sbjct: 798 YAAMGRDSLGAKFVNLIPSECPQDVYGEIAF----ILERKRSEDAQAGHPIAIL---LNG 850
Query: 781 QVDRKLVKQTVMTSVYGVTFVGAREQIKRRLEE-KGHITDDRQLFAAACYAAKVTLTALG 839
+ RK++KQTVMT+VYGVT GA+ QI ++L++ + + +L A+ Y A T +L
Sbjct: 851 AIQRKVIKQTVMTTVYGVTKYGAKLQIAKQLKDIESPVIPSEKLGEASVYLAHRTFDSLN 910
Query: 840 EIFEAARSIMGWLGDCAKVIASE 862
E+FE+++ I W CA +I+++
Sbjct: 911 EMFESSQKIQNWFISCADMISTD 933
>gi|353230079|emb|CCD76250.1| t3/t7 bacteriophage-related mitochodrial DNA-directed rna
polymerase [Schistosoma mansoni]
Length = 976
Score = 316 bits (810), Expect = 4e-83, Method: Compositional matrix adjust.
Identities = 195/512 (38%), Positives = 290/512 (56%), Gaps = 53/512 (10%)
Query: 466 MRTHGSRKQQEALKSVTGNCMKKVFEALDTLGSTKWRVNKQVLSVLESIWVSGGNIAGLV 525
+R S+ ++A +V +FE L T+ ++L L + SGGN
Sbjct: 394 VRHEFSKSDEKASSNVRRKDTPAIFEVLAEF-PTEVTNEIKILDYLIQVARSGGN----- 447
Query: 526 DRNDVLIPE---KP----LSEDMTEVQKWKWSVRKAKKINQERHSQRCD---TEL-KLSV 574
++ IPE KP L +MT ++ + + RK Q+ + + C TEL +LS+
Sbjct: 448 --ENLSIPEWRSKPKRVDLRNNMTAKER-RLAYRKYHSDRQD-YGEFCSLWSTELYRLSI 503
Query: 575 ARRMKDEEGFYYPHNLDFRGRAYPMHPHLNHLSSDVCRGVLEFAEGRPLGKSGLRWLKIH 634
A + +D+ ++PH++DFRGR YP PH NH SDV R ++ FA+G PLG +GL WLKIH
Sbjct: 504 ANQYRDKI-IWFPHSMDFRGRVYPCPPHFNHTGSDVARSLIVFAKGLPLGPNGLDWLKIH 562
Query: 635 LANLFSGGVEKLSHDGRLAFVENHLYEIFDSAENPINGSRWWLTAEDPFQCLAACINLSE 694
L NL +G ++ +H RL + ++ + +I DSAE P +G RWW +P+Q LA C+ L
Sbjct: 563 LVNL-TGLKKRCTHSERLEYADSIMNDIIDSAEKPFDGRRWWQNQAEPWQILACCMELKN 621
Query: 695 ALK-SSSPHSVISHLPIHQDGSCNGLQHYAALGRNTLEAAAVNLVAGEKPADVYSEIAVR 753
AL S P S +SH P+HQDGSCNGLQHYAALGR+ A +VNL + P D+YS++
Sbjct: 622 ALSHPSGPESYVSHFPVHQDGSCNGLQHYAALGRDLRGAKSVNLTSMNCPQDLYSDVVEI 681
Query: 754 VHEIMKRDSNKDPSKHPQALLAKILIDQVDRKLVKQTVMTSVYGVTFVGAREQIKRRLEE 813
V E + D++ S +AK L V RK++KQ++MT+VYGVT GA EQI+++L +
Sbjct: 682 VEEQRRIDADGGNS------IAKTLEGFVRRKVIKQSIMTTVYGVTSYGATEQIRKQLRD 735
Query: 814 KGHITDDRQLFAAACYAAKVTLTALGEIFEAARSIMGWLGDCAKVIASENQP-VRWTTPL 872
+ L A+ Y A++TL ++ ++F ++ I WL AK I+ + Q V W TPL
Sbjct: 736 LPDFPKE-SLLPASRYLARLTLNSIEKVFTSSVDIQNWLCKIAKYISGDFQHRVSWQTPL 794
Query: 873 GLPVVQPYCKNER--------------HLIRTSLQVLALQREG-------NLVKIRKQRT 911
GLPV+QPY ++ + LI + + + L ++ +L K KQ +
Sbjct: 795 GLPVIQPYIQSNKSSTDSDDYTVNFYSQLIDNNQKQIDLIKKDKIGDKLISLPKSSKQTS 854
Query: 912 AFPPNFVHSLDGSHMMMTAVACRDAGLHFAGL 943
AFPPNF+HSLD HMM+T + C G+ FA +
Sbjct: 855 AFPPNFIHSLDSCHMMLTGLQCLKEGIVFASV 886
>gi|256080007|ref|XP_002576275.1| t3/t7 bacteriophage-related mitochodrial DNA-directed rna
polymerase [Schistosoma mansoni]
Length = 976
Score = 316 bits (810), Expect = 4e-83, Method: Compositional matrix adjust.
Identities = 195/512 (38%), Positives = 290/512 (56%), Gaps = 53/512 (10%)
Query: 466 MRTHGSRKQQEALKSVTGNCMKKVFEALDTLGSTKWRVNKQVLSVLESIWVSGGNIAGLV 525
+R S+ ++A +V +FE L T+ ++L L + SGGN
Sbjct: 394 VRHEFSKSDEKASSNVRRKDTPAIFEVLAEF-PTEVTNEIKILDYLIQVARSGGN----- 447
Query: 526 DRNDVLIPE---KP----LSEDMTEVQKWKWSVRKAKKINQERHSQRCD---TEL-KLSV 574
++ IPE KP L +MT ++ + + RK Q+ + + C TEL +LS+
Sbjct: 448 --ENLSIPEWRSKPKRVDLRNNMTAKER-RLAYRKYHSDRQD-YGEFCSLWSTELYRLSI 503
Query: 575 ARRMKDEEGFYYPHNLDFRGRAYPMHPHLNHLSSDVCRGVLEFAEGRPLGKSGLRWLKIH 634
A + +D+ ++PH++DFRGR YP PH NH SDV R ++ FA+G PLG +GL WLKIH
Sbjct: 504 ANQYRDKI-IWFPHSMDFRGRVYPCPPHFNHTGSDVARSLIVFAKGLPLGPNGLDWLKIH 562
Query: 635 LANLFSGGVEKLSHDGRLAFVENHLYEIFDSAENPINGSRWWLTAEDPFQCLAACINLSE 694
L NL +G ++ +H RL + ++ + +I DSAE P +G RWW +P+Q LA C+ L
Sbjct: 563 LVNL-TGLKKRCTHSERLEYADSIMNDIIDSAEKPFDGRRWWQNQAEPWQILACCMELKN 621
Query: 695 ALK-SSSPHSVISHLPIHQDGSCNGLQHYAALGRNTLEAAAVNLVAGEKPADVYSEIAVR 753
AL S P S +SH P+HQDGSCNGLQHYAALGR+ A +VNL + P D+YS++
Sbjct: 622 ALSHPSGPESYVSHFPVHQDGSCNGLQHYAALGRDLRGAKSVNLTSMNCPQDLYSDVVEI 681
Query: 754 VHEIMKRDSNKDPSKHPQALLAKILIDQVDRKLVKQTVMTSVYGVTFVGAREQIKRRLEE 813
V E + D++ S +AK L V RK++KQ++MT+VYGVT GA EQI+++L +
Sbjct: 682 VEEQRRIDADGGNS------IAKTLEGFVRRKVIKQSIMTTVYGVTSYGATEQIRKQLRD 735
Query: 814 KGHITDDRQLFAAACYAAKVTLTALGEIFEAARSIMGWLGDCAKVIASENQP-VRWTTPL 872
+ L A+ Y A++TL ++ ++F ++ I WL AK I+ + Q V W TPL
Sbjct: 736 LPDFPKE-SLLPASRYLARLTLNSIEKVFTSSVDIQNWLCKIAKYISGDFQHRVSWQTPL 794
Query: 873 GLPVVQPYCKNER--------------HLIRTSLQVLALQREG-------NLVKIRKQRT 911
GLPV+QPY ++ + LI + + + L ++ +L K KQ +
Sbjct: 795 GLPVIQPYIQSNKSSTDSDDYTVNFYSQLIDNNQKQIDLIKKDKIGDKLISLPKSSKQTS 854
Query: 912 AFPPNFVHSLDGSHMMMTAVACRDAGLHFAGL 943
AFPPNF+HSLD HMM+T + C G+ FA +
Sbjct: 855 AFPPNFIHSLDSCHMMLTGLQCLKEGIVFASV 886
>gi|399219089|emb|CCF75976.1| unnamed protein product [Babesia microti strain RI]
Length = 1095
Score = 313 bits (802), Expect = 3e-82, Method: Compositional matrix adjust.
Identities = 191/541 (35%), Positives = 286/541 (52%), Gaps = 38/541 (7%)
Query: 440 YVPMLVPPKKWKGYNKGGYLFLPSYVMRTHGSRKQQEALKSVTGNCMKKVFEALDTLGST 499
Y+PM++ P+ W YNKGG + +RT ++ T +VF ++ +
Sbjct: 507 YLPMVIEPRPWTKYNKGGCYSSKAIFIRTPTGSYCDYSVYDFT-----RVFNIVNAISRV 561
Query: 500 KWRVNKQVLSVLESIWVSGGNIAGLVDRNDVLIPEKPLSEDMTEVQKWKWSVRKAKKINQ 559
W++N ++L ++ W S L + L +D+ E++ K + K +
Sbjct: 562 PWKINTRMLKLISLAWDSSSARLNLWPHLPIKSKISLLPDDLNEIENIKMYAKDPKVV-- 619
Query: 560 ERHSQRCDTEL-----KLSVARRMKDEEGFYYPHNLDFRGRAYPMHPHLNHLSSDVCRGV 614
E + R TE +LS+A+ + Y+PHN+DFRGR YPM HLNH+ D+CR +
Sbjct: 620 EFQNARLSTETPLLQRRLSIAKEFSNAAEIYFPHNIDFRGRLYPMSSHLNHMGDDLCRSL 679
Query: 615 LEFAEGRPLGKSGLRWLKIHLANLFSGGVEKLSHDGRLAFVENH------LYEIF----- 663
L FA G+PLG GL WLKIH+ANLF G +K+ RL +VE++ L +IF
Sbjct: 680 LLFARGKPLGDRGLFWLKIHIANLF--GQDKIQFQHRLDWVEDNIKNFERLVKIFNPSLI 737
Query: 664 DSAENPINGSRW--WLTAEDPFQCLAACINLSEALKSSSPHSVISHLPIHQDGSCNGLQH 721
D + W W++A+DP+Q +A L ALK P IS +PI QDGSCNGLQH
Sbjct: 738 DIPTKLLEDDVWNFWISADDPWQAYSAITELLNALKLDDPEEYISCIPIQQDGSCNGLQH 797
Query: 722 YAALGRNTLEAAAVNLVAGEKPADVYSEIAVRVHEIMKRDSNKDPSKHPQALLAKILIDQ 781
YAALGR+ +AVNL + P DVYS + V E ++ D N K + + +
Sbjct: 798 YAALGRDYNGGSAVNLTPSDSPQDVYSTVLQAVIEKVQND-NVIGEKDYEISAKCVQLGL 856
Query: 782 VDRKLVKQTVMTSVYGVTFVGAREQIKRR-LEEKGHITDDRQLFAAACYAAKVTLTALGE 840
+ RK+VKQTVMT YGVT GA EQIKR+ +E ++ + + Y A L+++ +
Sbjct: 857 LKRKVVKQTVMTICYGVTRSGAVEQIKRQIIELYPSQMQIEEVHSLSQYIADKILSSINK 916
Query: 841 IFEAARSIMGWLGDCAKVIASENQPVRWTTPLGLPVVQPYCKNERHLIRTSLQVLALQR- 899
+F+ A I WL + S P+ W +P+GLP QPY K + + + LQ L +
Sbjct: 917 VFKEAMKIKRWLDKISLAHNSLGIPINWLSPIGLPCHQPYSKYTKMHVVSPLQCLNISDP 976
Query: 900 EGNLVKIRKQRTAFPPNFVHSLDGSHMMMTAVA--------CRDAGLHFAGLSFQSALES 951
+ + +KQ+ AFPPNF+HSLD +H+MMTA A C A +H + + S +++
Sbjct: 977 DPDNPDKQKQKLAFPPNFIHSLDATHLMMTAEALLINDKRLCNFAAVHDSYWALPSDVDT 1036
Query: 952 V 952
+
Sbjct: 1037 M 1037
>gi|339245165|ref|XP_003378508.1| DNA-directed RNA polymerase domain protein [Trichinella spiralis]
gi|316972574|gb|EFV56247.1| DNA-directed RNA polymerase domain protein [Trichinella spiralis]
Length = 1230
Score = 311 bits (798), Expect = 9e-82, Method: Compositional matrix adjust.
Identities = 174/428 (40%), Positives = 240/428 (56%), Gaps = 52/428 (12%)
Query: 555 KKINQERHSQRCDTELKLSVARRMKDEEGFYYPHNLDFRGRAYPMHPHLNHLSSDVCRGV 614
KK+ E +S C KL++A +D+ ++PHNLDFRGR YP PH NH+ DVCRG+
Sbjct: 727 KKLKNENYSLWCSLLYKLTIANHFRDD-IIWFPHNLDFRGRVYPCPPHFNHMGDDVCRGI 785
Query: 615 ------------------------LEFAEGRPLGKSGLRWLKIHLANLFSGGVEKLSHDG 650
L FA+G+PLG+ GL WLK+HL NL +G ++ +
Sbjct: 786 WLIFYLLILLQFSHYSRLFKIEGLLLFAKGQPLGEKGLDWLKVHLINL-TGIMKHETFTA 844
Query: 651 RLAFVENHLYEIFDSAENPINGSRWWLTAEDPFQCLAACINLSEALKS-SSPHSVISHLP 709
RLAF + + +I DSA P+ G RWW +E+P+Q LA C+ ++ A+ + SH P
Sbjct: 845 RLAFANSIIEDILDSAAKPLTGRRWWTLSEEPWQTLACCMEIAAAINCPDGCENFQSHFP 904
Query: 710 IHQDGSCNGLQHYAALGRNTLEAAAVNLVAGEKPADVYSEIAVRVHEIMKRDSNKDPSKH 769
+HQDGSCNGLQHYAALGR+ A VNL ++P DVYS +A V + D+
Sbjct: 905 VHQDGSCNGLQHYAALGRDREGAFQVNLCPDDRPQDVYSGVAQLVEKKRVEDAKNGNE-- 962
Query: 770 PQALLAKILIDQVDRKLVKQTVMTSVYGVTFVGAREQIKRRLEEKGHITDDRQLFAAACY 829
+A L V RK+VKQTVMT+VYGVT GAR+QI ++L+ + DD Q F A+ Y
Sbjct: 963 ----IAIQLDGIVKRKVVKQTVMTTVYGVTQFGARQQISKQLKALDSLPDDVQ-FQASKY 1017
Query: 830 AAKVTLTALGEIFEAARSIMGWLGDCAKVIASENQ-PVRWTTPLGLPVVQPYCKNERHLI 888
+ T +LG++F A+ I WL + + ++A + Q + W TPL PVVQPY K
Sbjct: 1018 LMRKTFDSLGQMFAKAKLIQDWLAELSSLVAKDCQSAMSWRTPLQFPVVQPYYKPA---- 1073
Query: 889 RTSLQVLALQREGNLVKI-------------RKQRTAFPPNFVHSLDGSHMMMTAVACRD 935
R + VL + + RKQR FPPNF+HSLD SHMM+T++ C+
Sbjct: 1074 RVAASVLGDYSDDVCRRAVYNRCCSTGRPDSRKQRNGFPPNFIHSLDSSHMMLTSLYCQR 1133
Query: 936 AGLHFAGL 943
GL FA +
Sbjct: 1134 DGLTFASV 1141
>gi|426347255|ref|XP_004041272.1| PREDICTED: LOW QUALITY PROTEIN: DNA-directed RNA polymerase,
mitochondrial-like [Gorilla gorilla gorilla]
Length = 943
Score = 305 bits (782), Expect = 6e-80, Method: Compositional matrix adjust.
Identities = 160/357 (44%), Positives = 224/357 (62%), Gaps = 16/357 (4%)
Query: 593 RGRAYPMHPHLNHLSSDVCRGVLEFAEGRPLGKSGLRWLKIHLANLFSGGVEKLSHDGRL 652
R R H NHL SDV R +LEFA+GRPLG GL WLKIHL NL +G ++ L
Sbjct: 516 RQRXXXXXXHFNHLGSDVARALLEFAQGRPLGPRGLDWLKIHLVNL-TGLKKREPLRKCL 574
Query: 653 AFVENHLYEIFDSAENPINGSRWWLTAEDPFQCLAACINLSEALKSSSPHSVISHLPIHQ 712
AF E + +I DSA+ P+ G +WW+ AE+P+Q LA C+ ++ A+++S P + +SHLP+HQ
Sbjct: 575 AFAEEVMDDILDSADQPLTGRKWWMGAEEPWQTLACCMEVANAVRASDPAAYVSHLPVHQ 634
Query: 713 DGSCNGLQHYAALGRNTLEAAAVNLVAGEKPADVYSEIAVRVHEIMKRDSNKDPSKHPQA 772
DGSCNGLQHYAALGR+++ AA+VNL + P DVYS +A +V ++D+ +
Sbjct: 635 DGSCNGLQHYAALGRDSVGAASVNLEPSDVPQDVYSGVAAQVEVFRRQDAQRGTR----- 689
Query: 773 LLAKILIDQVDRKLVKQTVMTSVYGVTFVGAREQIKRRLEEKGHITDDRQLFA--AACYA 830
+A++L + RK+VKQTVMT VYGVT G R QI++RL E + D Q F A+ Y
Sbjct: 690 -VAQVLEGFITRKVVKQTVMTVVYGVTRYGGRLQIEKRLRE---LNDFPQEFVWEASHYL 745
Query: 831 AKVTLTALGEIFEAARSIMGWLGDCAKVIASENQPVRWTTPLGLPVVQPY-CKNERHLIR 889
A+ +L E+F R+I WL + A++I+ V W TPLG+PV+QPY ++ I
Sbjct: 746 ARQVFKSLQEMFSGTRAIQHWLTESARLISHTGSVVEWVTPLGVPVIQPYRLDSKGKQIG 805
Query: 890 TSLQVLALQREGNLVK---IRKQRTAFPPNFVHSLDGSHMMMTAVACRDAGLHFAGL 943
+Q +A G++ + RKQ+ FPPNF+HSLD SHMM+TA+ GL F +
Sbjct: 806 GGIQSIAYTHNGDISRKPNPRKQKNGFPPNFIHSLDSSHMMLTALHYYRKGLTFVSV 862
>gi|403221340|dbj|BAM39473.1| DNA-directed RNA polymerase precursor [Theileria orientalis strain
Shintoku]
Length = 1221
Score = 305 bits (780), Expect = 1e-79, Method: Compositional matrix adjust.
Identities = 194/565 (34%), Positives = 302/565 (53%), Gaps = 57/565 (10%)
Query: 396 AFRHRFKTILKHPGQKTTKRYGVVEC-DPLVLEGLDRSAKHML-IPYVPMLVPPKKWKGY 453
AFRH +L G KT +GV+E + +L+ D AK +L + +PM+ PKKW
Sbjct: 603 AFRH----VLLRQGIKT---FGVLEMRESCMLQLRDFVAKSLLSLAALPMVCRPKKWINA 655
Query: 454 NKGGYLFLPSYVMRTHGSRKQQEALKSVTGNCMKKVFEALDTLGSTKWRVNKQVLSVLES 513
GG L L +R GS+ + + + G VF+ ++ W +N+ +L ++++
Sbjct: 656 TTGGSLLLKHNFIR--GSKLNEVKVYDLEG-----VFDIVNRFSQVPWVINRDMLQIIKA 708
Query: 514 IWVSGGNIAGLVDRNDVLIPEK---PLSEDMTEVQKWKWSVRKAKKINQERHSQRCDTEL 570
I + + IP K P++ + S K+N ++ S+
Sbjct: 709 I-----------NNDPNSIPMKQFVPITGNNGISGNNGVSGGADTKLNSDQLSELSLFLR 757
Query: 571 KLSVARRMKDEEGFYYPHNLDFRGRAYPMHPHLNHLSSDVCRGVLEFAEGRPLGKSGLRW 630
++ +A +E+ Y P N+DFRGR YP+ P+LNH++ D+CR +L F+E R +G+ GL W
Sbjct: 758 RIKIADSFVNEKKLYVPLNIDFRGRMYPLSPYLNHMNDDLCRSLLLFSERRRMGERGLFW 817
Query: 631 LKIHLANLFSGGVEKLSHDGRLAFVENHLYEIFDSAENPIN--GSRWWLTAEDPFQCLAA 688
LKIH++N+F G +K S + R+ +V+ H I D NP +W A+ PFQ AA
Sbjct: 818 LKIHVSNMF--GNDKKSFEERIRWVDEHYAIIADLTRNPWGDFNQNFWAKADKPFQFFAA 875
Query: 689 CINLSEALKSSSPHSVISHLPIHQDGSCNGLQHYAALGRNTLEAAAVNLVAGEKPADVYS 748
+ L A++S P + +++PI QDG+CNGLQHYAALG + A VN+V +P D+YS
Sbjct: 876 SLELVRAVESGDPANYRTNIPIQQDGTCNGLQHYAALGLDEEGARYVNMVDAAEPQDLYS 935
Query: 749 EIAVRVHEIMKRDSNK---DPSKHP----------QALL------AKILIDQ--VDRKLV 787
I V + + +D N DP +A L A++ I+ + RK+V
Sbjct: 936 HILQVVIKKVYQDLNSAAGDPGTDTGHAGKRKTDGKATLESNRRHAELCINNNLLSRKVV 995
Query: 788 KQTVMTSVYGVTFVGAREQIKRRLEEKGHITD--DRQLFAAACYAAKVTLTALGEIFEAA 845
KQTVMT YGVT VGA +Q++ +L++ + + +L A Y A LT++ +F A
Sbjct: 996 KQTVMTICYGVTRVGAIDQVEAKLKDVKKVAQLPEAELRGLATYLATKILTSITSVFSRA 1055
Query: 846 RSIMGWLGDCAKVIASENQPVRWTTPLGLPVVQPYCKNERHLIRTSLQVLALQREGNLVK 905
I WL + + + N PV W +P+GLP QPYC + ++T LQ + + R V
Sbjct: 1056 MGIKNWLDEISLLHNQHNVPVTWISPVGLPCEQPYCLSVTKTVKTPLQAINVARYVPGVD 1115
Query: 906 IRKQRTAFPPNFVHSLDGSHMMMTA 930
R+Q+ AFPPNF+HSLD +H+M+TA
Sbjct: 1116 KRRQKLAFPPNFIHSLDAAHLMLTA 1140
>gi|405963522|gb|EKC29086.1| DNA-directed RNA polymerase, mitochondrial [Crassostrea gigas]
Length = 689
Score = 304 bits (779), Expect = 1e-79, Method: Compositional matrix adjust.
Identities = 169/418 (40%), Positives = 245/418 (58%), Gaps = 28/418 (6%)
Query: 484 NCMKKVFEALDTLGSTKWRVNKQVLSV-LESIWVSGGNIAGLVDRNDVL----IP----- 533
N + V ++L+ LG+ W++N ++L V LE + G L L P
Sbjct: 206 NSLHPVMDSLNILGTCGWKINTKMLDVVLELFRENAGAFLDLPPAKHTLQKPVFPLQETK 265
Query: 534 --EKPLSEDMTEVQKWK---WSV-RKAKKINQERHSQRCDTELKLSVARRMKDEEGFYYP 587
EK ++++ E++K K W+V KK E HS C L++A ++DE ++P
Sbjct: 266 ELEKQYAQEVEELKKRKADLWTVFYNLKKQRAETHSLWCHLHRTLTIADSLRDE-VIWFP 324
Query: 588 HNLDFRGRAYPMHPHLNHLSSDVCRGVLEFAEGRPLGKSGLRWLKIHLANLFSGGVEKLS 647
H+LDFRGR YP PHLN+ DV R + +FA G+PLG+ GL WLKIHL NL +G ++ S
Sbjct: 325 HSLDFRGRCYPFMPHLNYHGDDVRRSLFQFANGKPLGEKGLDWLKIHLINL-TGFAKRSS 383
Query: 648 HDGRLAFVENHLYEIFDSAENPINGSRWWLTAEDPFQCLAACINLSEALKSSSPHSVISH 707
+ RL + +I DSA+NP+ G +WW T+++PFQ LAACI ++ A++S P +S+
Sbjct: 384 NKERLHLANTLMSDIMDSADNPLKGGKWWQTSDEPFQTLAACIEVTAAMRSKDPTQFVSY 443
Query: 708 LPIHQDGSCNGLQHYAALGRNTLEAAAVNLVAGEKPADVYSEIAVRVHEIMKRDSNKDPS 767
P HQDGSCNGLQHYAALGR+ A +VNL P DVYS++ V +I +RD+ +
Sbjct: 444 FPTHQDGSCNGLQHYAALGRDQAGAESVNLSPFTHPQDVYSDVVDLVEKIRQRDAEEGLE 503
Query: 768 KHPQALLAKILIDQVDRKLVKQTVMTSVYGVTFVGAREQIKRRLEE--KGHITDDRQLFA 825
+A+ L + RK +KQTVMTSVYGVT GA+ QI +++ + + D L
Sbjct: 504 ------IAQKLDGLIKRKTIKQTVMTSVYGVTMYGAKLQIHKQISTLPQESLVSDLHL-P 556
Query: 826 AACYAAKVTLTALGEIFEAARSIMGWLGDCAKVIASE-NQPVRWTTPLGLPVVQPYCK 882
A+ Y A+ T AL E+F +ARSI W A+ +A + P +W P+G+PV+QPY K
Sbjct: 557 ASVYLARCTFKALEEMFSSARSIQNWFTLIAQGLAKDCKMPTQWVMPMGIPVIQPYMK 614
>gi|15888521|ref|NP_354202.1| DNA-directed RNA polymerase [Agrobacterium fabrum str. C58]
gi|15156227|gb|AAK86987.1| DNA-directed RNA polymerase [Agrobacterium fabrum str. C58]
Length = 863
Score = 303 bits (775), Expect = 4e-79, Method: Compositional matrix adjust.
Identities = 213/707 (30%), Positives = 338/707 (47%), Gaps = 103/707 (14%)
Query: 286 AVHIGMAIEQEIRIHSFLEKTKN---YKRKKIIADTEEVLSKEKELLRKRVNSLIKSKRV 342
++ + +E E+ ++F K+ Y RKKI ++ ++ + KR
Sbjct: 129 SIRLAAMVEDELFFNAFKGHDKDAYEYARKKI---------------SEQTHNAVHQKRA 173
Query: 343 MEAQKLLKNEETKPWGRDTQAKLGSRLVELLIETAYVQHPVNPADYSPPDVRPAFRHRFK 402
M K E + W +D +AK+G +L+E+ +E + F+
Sbjct: 174 MTKHAKHKGAEWQDWSQDVKAKVGLKLIEIAVEQTGL---------------------FE 212
Query: 403 TILKHPGQKTTKRYGVVECDPLVLEGLDRSAKHMLIP-YVPMLVPPKKWKGYNKGGYLFL 461
+ + G T Y V + L + S L P Y+P LVPP+ W +GGY
Sbjct: 213 IVRQSEGAHNTNIYVVATKETLDWLATENSRLAPLSPVYLPTLVPPRPWTSPFRGGYWSG 272
Query: 462 PSYVMR--THGSRKQQEALKSVTGNCMKKVFEALDTLGSTKWRVNKQVLSVLESIWVSGG 519
+R G+R+ L+SV M KV+ +++ + +T W +N +V V+ S+W +
Sbjct: 273 RVRNLRLIKTGNRQYLMDLESVD---MPKVYHSINAMQNTAWSINHRVYEVMASLWDNQS 329
Query: 520 NIAGLVDRNDVLIPEKPL-------SEDMT-----EVQKWKWSVRKAKKINQERHSQRCD 567
+A + +D+ +PEKP+ EDM+ E +WK + N S+R
Sbjct: 330 TLACIPQADDMPLPEKPMWLAPEMKREDMSPEQLEEFSRWKSERTTIYEANARAVSKRLA 389
Query: 568 TELKLSVARRMKDEEGFYYPHNLDFRGRAYPMHPHLNHLSSDVCRGVLEFAEGRPL-GKS 626
L VA R KDEE FY+PH +DFRGR Y + LN D G+L+FA P+ +
Sbjct: 390 FSRMLGVATRFKDEEEFYFPHQMDFRGRVYAVPLFLNPQGDDASHGLLQFANSVPITNEE 449
Query: 627 GLRWLKIHLANLFSGGVEKLSHDGRLAFVENHLYEIFDSAENPINGSRWWLTAEDPFQCL 686
G WL IH A L+ GV+K S + R+ +V + EI SAENP + +R+WLTAE P+Q L
Sbjct: 450 GADWLAIHGAGLW--GVDKCSMNERVEWVMANQREILASAENPYD-NRFWLTAEKPWQAL 506
Query: 687 AACINLSEALKSSSPHSVISHLPIHQDGSCNGLQHYAALGRNTLEAAAVNLVAGEKPADV 746
A C + + + SHLP+ DG+CNGLQ+++A+ + + AAVNLV +KP D+
Sbjct: 507 AFCFEWQGYV--AEGFAFHSHLPVQMDGTCNGLQNFSAMLLDEIGGAAVNLVPSDKPNDI 564
Query: 747 YSEIA-----------------VRVHEIMKRDSNKDPS---KHPQALLAKILIDQVDRKL 786
Y+ +A E+ +++ ++ + + ++ K L + RK+
Sbjct: 565 YATVASVLIAKLRDIAAACPEDTTTKEVKDKETKENKTIVVESDGSMARKWLAYGITRKV 624
Query: 787 VKQTVMTSVYGVTFVGAREQIKRRLEEKGHITDDRQL-----------FAAACYAAKVTL 835
K+ VMT YG + G REQ+ +T +Q FAAA + +
Sbjct: 625 TKRPVMTLAYGASEFGFREQVFTDT-----VTPWKQAAGEAFPFEGTGFAAASFLGLLIW 679
Query: 836 TALGEIFEAARSIMGWLGDCAKVIASENQPVRWTTPLGLPVVQPYCKNERHLIRTSLQVL 895
+GE+ AA M WL AK+ A E+ PV W TP GL V+Q Y +E+ + + Q +
Sbjct: 680 DCVGEVVVAAAGAMDWLQKVAKIAAKESLPVIWNTPAGLKVMQEYTTSEQKRLELTFQKV 739
Query: 896 ALQREGNL----VKIRKQRTAFPPNFVHSLDGSHMMMTAVACRDAGL 938
LQ ++ + RKQ + PN+VHS+D +HM +T C D G+
Sbjct: 740 RLQLSIDVASKKIDKRKQGSGISPNWVHSMDAAHMQLTVSRCHDEGI 786
>gi|294658854|ref|XP_461193.2| DEHA2F19470p [Debaryomyces hansenii CBS767]
gi|202953437|emb|CAG89581.2| DEHA2F19470p [Debaryomyces hansenii CBS767]
Length = 1271
Score = 301 bits (772), Expect = 8e-79, Method: Compositional matrix adjust.
Identities = 205/621 (33%), Positives = 310/621 (49%), Gaps = 82/621 (13%)
Query: 395 PAFRHRFKTILKHPGQKTTKRYGVVECDPLVLEGLDRSAKHMLIP---YVPMLVPPKKWK 451
PAF + L++ K+ GV++ P + E +S + + Y+PML PPK W
Sbjct: 483 PAFLWGY---LRNHDSPAYKKTGVIKIHPYLSEEF-KSYESFFVDRSLYLPMLCPPKPWT 538
Query: 452 GYNKGGYLFLPSYVMRTHGSRKQQEALKSV--TGNCMKKVFEALDTLGSTKWRVNKQVLS 509
GGYL ++ T L TG +K ++E L+ LGS W +N L+
Sbjct: 539 SPVVGGYLNDLKPIINTDDISTSLFYLNKAHKTGQ-LKSLYEGLNVLGSLAWAINPSTLN 597
Query: 510 VLE---SIWVSGGNIAGLVDRNDVLIPEKPLSEDMT---EVQK--WKWSVRKAKKINQER 561
+ S+ I + V++P++P D + E K WK+ ++ K + QE
Sbjct: 598 IFNQAMSVNKEFLKIPPNFNELQVILPQEPKKPDYSSESEYNKAIWKYRIQVGKSL-QEY 656
Query: 562 H---SQRCDTELKLSVARRM-KDEEGFYYPHNLDFRGRAYPMHPHLNHLSSDVCRGVLEF 617
H SQR + L +A K+ + FY PHN+DFRGRAYPM L+H D+ R +L F
Sbjct: 657 HAIKSQRVELNLIQQLANSFNKNGDMFYLPHNVDFRGRAYPMVSLLSHYQDDLVRSLLMF 716
Query: 618 AEGRPLGKSGLRWLKIHLANLFSGGVEKLSHDGRLAFVENHLYEIFDSAENPINGSRWWL 677
+PLG +G WLK LA ++ G +KLS D R+ F++ +L I DSAENPI G WW
Sbjct: 717 WFAKPLGPNGFNWLKYQLAGVY--GKDKLSMDERIDFIDKNLNLIVDSAENPIKGKMWWK 774
Query: 678 TAEDPFQCLAACINLSEALK-----SSSPHSVISHLPIHQDGSCNGLQHYAALGRNTLEA 732
+ E P+Q L+ C +++ L+ + + +PIHQDGSCNGLQHYAALG++
Sbjct: 775 SGEKPWQTLSLCFEINKVLQYCQNDGNKVEEYLCRIPIHQDGSCNGLQHYAALGKDKEGG 834
Query: 733 AAVNLVAGEKP----ADVYSEIAVRVHEIMKRDSNKDPSKHPQALLAKILIDQVDRKLVK 788
+VNL+ + +DVY+E+ V + + + S +DPS Q L A + + + RK+VK
Sbjct: 835 ISVNLLQTDSSRPIRSDVYTEVLNIVKDQVLKHS-QDPSNQYQEL-AALALSILSRKVVK 892
Query: 789 QTVMTSVYGVTFVGAREQIKRR-----------LEEKGHITDDRQLFA--------AACY 829
QTVMTSVYGVT GA QI R L E I + F+ + Y
Sbjct: 893 QTVMTSVYGVTRHGATLQINMRIKEIIKNFEVQLNEGNGIPITPEQFSKLKILNVEVSNY 952
Query: 830 AAKVTLTALGEIFEAARSIMGWL-GDCAKVIASEN------------------------Q 864
A L ++ ++F A+ I WL +C ++I S + +
Sbjct: 953 LASTVLNSITKLFSGAKLIQDWLLCNCFRIINSFDLETFQSLTRLNKKEVIDFFNPQLYK 1012
Query: 865 PVRWTTPLGLPVVQPYCKNERHLIRTSLQVLALQREGNL--VKIRKQRTAFPPNFVHSLD 922
P+ WT+ G PV+Q Y ++ + TSLQ + + + L + +RKQ A PNF+HS+D
Sbjct: 1013 PMMWTSMSGFPVIQLYKHTKQKALPTSLQSIIINKPSKLANIDVRKQLNAVAPNFIHSID 1072
Query: 923 GSHMMMTAVACRDAGLHFAGL 943
HM+MT ++ + F +
Sbjct: 1073 SIHMLMTCISAEKNNIPFVSV 1093
>gi|146421878|ref|XP_001486882.1| hypothetical protein PGUG_00259 [Meyerozyma guilliermondii ATCC
6260]
Length = 1144
Score = 301 bits (770), Expect = 1e-78, Method: Compositional matrix adjust.
Identities = 217/645 (33%), Positives = 316/645 (48%), Gaps = 73/645 (11%)
Query: 364 KLGSRLVELLIET-------AYVQHPVNPADYSPPDVRPAFRHRFKTIL---KHPGQKTT 413
+L S LV+L IE Y P N + D + AF IL K P +
Sbjct: 347 RLFSHLVKLAIENCTIPPQLVYKSFPKN--THYLLDSKGAFSKNQAFILLMIKSPDSTSY 404
Query: 414 KRYGVVECDPLVLEGLD--RSAKHMLIPYVPMLVPPKKWKGYNKGGYLFLPSYVMRTHGS 471
++ G + P ++ + +PMLVP + W ++GGYL ++ + +
Sbjct: 405 RQVGTIVPHPFLVYDFKGRQEMPETTSILLPMLVPARNWTSPDEGGYLGDLQPILHSDFT 464
Query: 472 RKQQEALKSVTGNC-MKKVFEALDTLGSTKWRVNKQVLSVLES-IWVSGG--NIAGLVDR 527
K + L+ ++ F+ LD LGS W VN +L V S + S G NI V
Sbjct: 465 EKSLQYLRLANRTSQLQSTFKGLDYLGSQAWAVNLSMLEVFSSAMQRSDGMLNIVPPVSS 524
Query: 528 NDVLIPEKPLSEDMTEVQKWKWSVRKAKKINQERHSQ-------RCDTELKLSVARRM-K 579
+V IP P +D ++ +++ KK ++R + R + E L AR
Sbjct: 525 MEVNIPPNPSRKDFGSETEYYIALKNVKKEREKRLQEFHNLKGLRVELETLLKAARAFGA 584
Query: 580 DEEGFYYPHNLDFRGRAYPMHPHLNHLSSDVCRGVLEFAEGRPLGKSGLRWLKIHLANLF 639
+ + Y PH LDFR RAYPM L+H SD+ R +L F +PLG G +WL+ LA +
Sbjct: 585 NGDMVYLPHQLDFRSRAYPMVSVLSHYQSDLVRSLLTFWHSKPLGPDGDKWLRYQLAAHY 644
Query: 640 SGGVEKLSHDGRLAFVENHLYEIFDSAENPINGSRWWLTAEDPFQCLAACINLSEALK-- 697
G++KLS DGRL FV +++ I A+NP G WW AE P+Q LA C ++ K
Sbjct: 645 --GMDKLSLDGRLKFVADNMETILKCAQNPF-GEVWWQKAEKPWQTLAMCFEFAKLQKYI 701
Query: 698 --SSSPHSVISHLPIHQDGSCNGLQHYAALGRNTLEAAAVNLVAGEKPADVYSEIAVRVH 755
S H LPI DGSCNGLQHYAALG + L A +VN++ EK V ++ V
Sbjct: 702 AEGKSVHDYPCRLPISLDGSCNGLQHYAALGADKLGAQSVNVMPSEKDNGVRQDVYSAVL 761
Query: 756 EIMKRDSNKDPSKHPQ--ALLAKILIDQVDRKLVKQTVMTSVYGVTFVGAREQIKRRLEE 813
EI+ + K + P + LAK L+ RKL+KQTVMTSVYGVT GA QI+ R+ +
Sbjct: 762 EIVTQKVLKSEADEPNITSSLAKHLL---SRKLIKQTVMTSVYGVTAFGAAAQIRNRISD 818
Query: 814 KGHITDDRQ----------LFAAACYAAKVTLTALGEIFEAARSIMGW-LGDCAKVIA-- 860
+ D + A Y +K+ L ++ E+F AR + W L +C ++I+
Sbjct: 819 VIDLADKLEPKIREEVKTHQNKIALYLSKMVLDSISELFSGARRLQDWLLLNCYRIISSW 878
Query: 861 ---------SEN-----------QPVRWTTPLGLPVVQPYCKNERHLIRTSLQVLALQR- 899
SEN +P+ WT+ G PVVQ Y K +R ++ TSLQ +LQ+
Sbjct: 879 DEATLVSLESENIEVDFFLNKFYRPMMWTSVSGFPVVQIYLKPQRQILETSLQRFSLQKW 938
Query: 900 -EGNLVKIRKQRTAFPPNFVHSLDGSHMMMTAVACRDAGLHFAGL 943
+ + V I++Q PNF+HSLD HM MT +A + + F +
Sbjct: 939 TKPSPVDIQRQLNGVAPNFIHSLDSVHMFMTCLAAKAEDIAFVAV 983
>gi|443730014|gb|ELU15709.1| hypothetical protein CAPTEDRAFT_156688 [Capitella teleta]
Length = 601
Score = 300 bits (768), Expect = 3e-78, Method: Compositional matrix adjust.
Identities = 186/533 (34%), Positives = 282/533 (52%), Gaps = 35/533 (6%)
Query: 425 VLEGLDRSAKHMLIPYVPM----LVPPKKWKGYNKGGYLFLPSYVMRTHGSRKQQEALKS 480
VL L R+AK + + P+ ++PP W + G +F ++R H +++ L S
Sbjct: 5 VLCMLFRTAKLKQVTFSPIELPSVIPPVPWTSHKHGADIFSTVELIR-HADDVRRDTLLS 63
Query: 481 VTGNCMKKVFEALDTLGSTKWRVNKQVLSVLESIWVSGGNIAGLVDRNDVLIPEKPLSED 540
+ +AL+T+G+ W +NK+VL V+ ++ +GG+ V + IP P
Sbjct: 64 TPLQKVLPTLDALNTVGACPWIINKKVLDVMVEVFKTGGSEQLDVPCSIHDIPLPPKIHS 123
Query: 541 MTEVQKWKWSVRKAKKINQERHSQRCDTELKLSVARRMKDEEGFYYPHNLDFRGRAYPM- 599
W + + S D +S R +K ++ P R + +
Sbjct: 124 WCPAAVWHRLLLEG--------SIAVDFSSNVSKCRNVKQQKEKNSPVEKSLRSDVWTLL 175
Query: 600 --------HPHLNHLSSDVCRGVLEFAEGRPLGKSGLRWLKIHLANLFSGGVEKLSHDGR 651
P + SD+ RG++ F +G+PLG SGL WLKIH NL +G ++ + R
Sbjct: 176 TSMSLKSTFPAVEVPGSDLSRGIMVFGQGKPLGASGLDWLKIHCINL-TGLKKRSPNSER 234
Query: 652 LAFVENHLYEIFDSAENPINGSRWWLTAEDPFQCLAACINLSEALKSSSPHSVISHLPIH 711
LA+ + +I DSAE P++G WW A++P+Q LA C+ ++ A +S P + +SHLP+H
Sbjct: 235 LAYANEVMDDILDSAERPLSGRGWWKDADEPWQTLATCMEIAAASQSPDPSAFVSHLPVH 294
Query: 712 QDGSCNGLQHYAALGRNTLEAAAVNLVAGEKPADVYSEIAVRVHEIMKRDSNKDPSKHPQ 771
QDGSCNGLQHYAALGR+ A ++NL + P DVYS++ V + D+ K
Sbjct: 295 QDGSCNGLQHYAALGRDVEGAKSINLHPMDTPRDVYSDVVELVESVRADDAMKGNE---- 350
Query: 772 ALLAKILIDQVDRKLVKQTVMTSVYGVTFVGAREQIKRRLEEKGHITDDRQLFAAACYAA 831
+AK+L + RK++KQT+MT+VYGVT GAR+QI+ +LE+ + + AA Y
Sbjct: 351 --IAKVLEGHIQRKVIKQTIMTTVYGVTIYGARKQIQGQLEDLETFPQE-HVSAAKNYLT 407
Query: 832 KVTLTALGEIFEAARSIMGWLGDCAKVIAS-ENQPVRWTTPLGLPVVQPYCKNERHLIRT 890
TL++L ++F +AR I W A ++ V W TPLG PVVQ Y + +
Sbjct: 408 AKTLSSLEQMFTSARQIQDWFVLMAMLVTRVRGNLVSWRTPLGWPVVQYYASHNHTFSKL 467
Query: 891 SLQVLALQREGNLVKIRKQRTAFPPNFVHSLDGSHMMMTAVACRDAGLHFAGL 943
S + L + K RKQ AFPPNF+HSLD SHMM+TAV C+ G+ FA +
Sbjct: 468 SGEKALLVKP----KSRKQMNAFPPNFIHSLDASHMMLTAVHCQRKGITFASV 516
>gi|190344480|gb|EDK36161.2| hypothetical protein PGUG_00259 [Meyerozyma guilliermondii ATCC
6260]
Length = 1144
Score = 298 bits (764), Expect = 7e-78, Method: Compositional matrix adjust.
Identities = 217/652 (33%), Positives = 318/652 (48%), Gaps = 73/652 (11%)
Query: 357 WGRDTQAKLGSRLVELLIET-------AYVQHPVNPADYSPPDVRPAFRHRFKTIL---K 406
+ ++ +L S LV+L IE Y P N + D + AF IL K
Sbjct: 340 FTKEDGIRLFSHLVKLAIENCTIPPQLVYKSFPKN--THYLLDSKGAFSKNQAFILSMIK 397
Query: 407 HPGQKTTKRYGVVECDPLVLEGLD--RSAKHMLIPYVPMLVPPKKWKGYNKGGYLFLPSY 464
P + ++ G + P ++ + +PMLVP + W ++GGYL
Sbjct: 398 SPDSTSYRQVGTIVPHPFLVYDFKGRQEMPETTSILLPMLVPARNWTSPDEGGYLGDLQP 457
Query: 465 VMRTHGSRKQQEALKSVTGNC-MKKVFEALDTLGSTKWRVNKQVLSVLES-IWVSGG--N 520
++ + + K + L+ ++ F+ LD LGS W VN +L V S + S G N
Sbjct: 458 ILHSDFTEKSLQYLRLANRTSQLQSTFKGLDYLGSQAWAVNLSMLEVFSSAMQRSDGMLN 517
Query: 521 IAGLVDRNDVLIPEKPLSEDMTEVQKWKWSVRKAKKINQERHSQ-------RCDTELKLS 573
I V +V IP P +D ++ +++ KK ++R + R + E L
Sbjct: 518 IVPPVSSMEVNIPPNPSRKDFGSETEYYIALKNVKKEREKRLQEFHNLKGLRVELETLLK 577
Query: 574 VARRM-KDEEGFYYPHNLDFRGRAYPMHPHLNHLSSDVCRGVLEFAEGRPLGKSGLRWLK 632
AR + + Y PH LDFR RAYPM L+H SD+ R +L F +PLG G +WL+
Sbjct: 578 AARAFGANGDMVYLPHQLDFRSRAYPMVSVLSHYQSDLVRSLLTFWHSKPLGPDGDKWLR 637
Query: 633 IHLANLFSGGVEKLSHDGRLAFVENHLYEIFDSAENPINGSRWWLTAEDPFQCLAACINL 692
LA + G++KLS DGRL FV +++ I A+NP G WW AE P+Q LA C
Sbjct: 638 YQLAAHY--GMDKLSLDGRLKFVADNMETILKCAQNPF-GEVWWQKAEKPWQTLAMCFEF 694
Query: 693 SEALK----SSSPHSVISHLPIHQDGSCNGLQHYAALGRNTLEAAAVNLVAGEKPADVYS 748
++ K S H LPI DGSCNGLQHYAALG + L A +VN++ EK V
Sbjct: 695 AKLQKYIAEGKSVHDYPCRLPISLDGSCNGLQHYAALGADKLGAQSVNVMPSEKDNGVRQ 754
Query: 749 EIAVRVHEIMKRDSNKDPSKHPQ--ALLAKILIDQVDRKLVKQTVMTSVYGVTFVGAREQ 806
++ V EI+ + K + P + LAK L+ RKL+KQTVMTSVYGVT GA Q
Sbjct: 755 DVYSAVLEIVTQKVLKSEADEPNITSSLAKHLL---SRKLIKQTVMTSVYGVTAFGAAAQ 811
Query: 807 IKRRLEEKGHITDDRQ----------LFAAACYAAKVTLTALGEIFEAARSIMGW-LGDC 855
I+ R+ + D + A Y +K+ L ++ E+F AR + W L +C
Sbjct: 812 IRNRISDVIDSADKLEPKIREEVKTHQNKIALYLSKMVLDSISELFSGARRLQDWLLLNC 871
Query: 856 AKVIA-----------SEN-----------QPVRWTTPLGLPVVQPYCKNERHLIRTSLQ 893
++I+ SEN +P+ WT+ G PVVQ Y K +R ++ TSLQ
Sbjct: 872 YRIISSWDEATLVSLESENIEVDFFLNKFYRPMMWTSVSGFPVVQIYLKPQRQILETSLQ 931
Query: 894 VLALQR--EGNLVKIRKQRTAFPPNFVHSLDGSHMMMTAVACRDAGLHFAGL 943
+LQ+ + + V I++Q PNF+HSLD HM MT +A + + F +
Sbjct: 932 RFSLQKWTKPSPVDIQRQLNGVAPNFIHSLDSVHMFMTCLAAKAEDIAFVAV 983
>gi|355712786|gb|AES04465.1| polymerase mitochondrial [Mustela putorius furo]
Length = 375
Score = 296 bits (758), Expect = 3e-77, Method: Compositional matrix adjust.
Identities = 155/378 (41%), Positives = 229/378 (60%), Gaps = 14/378 (3%)
Query: 442 PMLVPPKKWKGYNKGGYLFLPSYVMRT-HGSRKQQEALKSVTGNCMKKVFEALDTLGSTK 500
PML PP W + G +L P+ +MR+ G+ + Q L S + +AL LG+
Sbjct: 1 PMLCPPLPWTSPHTGAFLLSPTKLMRSLEGTVQHQRLLDSCPPADLHGALDALTQLGNCA 60
Query: 501 WRVNKQVLSVLESIWVSGGNIAGLVDRNDVLIPEKP---LSEDMTEVQKW--KWSVRKAK 555
WRVN +VL ++ ++ + G V P P L + QK + + +
Sbjct: 61 WRVNGRVLDLVLELFTAKGCPHLGVPAPASEAPRPPDGRLPPGASPAQKAEVRRELARCL 120
Query: 556 KINQERHSQRCDTELKLSVARRMKDEEGFYYPHNLDFRGRAYPMHPHLNHLSSDVCRGVL 615
K+ +E HS R D +LS+A+ ++ F+ PHN+DFRGR YP PH +HL SD+ R +L
Sbjct: 121 KVAREMHSLRSDALYRLSLAQHLR-HRVFWLPHNMDFRGRTYPCPPHFHHLGSDLARALL 179
Query: 616 EFAEGRPLGKSGLRWLKIHLANLFSGGVEKLSHDGRLAFVENHLYEIFDSAENPINGSRW 675
EFA+GRPLG GL WLK+HL NL +G ++ S RLAF + + +I DSA+ P+ G +W
Sbjct: 180 EFAQGRPLGARGLDWLKVHLVNL-TGLKKRESLQARLAFADEVMKDILDSADRPMTGRKW 238
Query: 676 WLTAEDPFQCLAACINLSEALKSSSPHSVISHLPIHQDGSCNGLQHYAALGRNTLEAAAV 735
W+ ++P+Q LA C+ ++ A+++ P + +SH P+HQDGSCNGLQHYAALGR+++ AA+V
Sbjct: 239 WMQVDEPWQALACCMEIARAVRAPDPAAYVSHFPVHQDGSCNGLQHYAALGRDSVGAASV 298
Query: 736 NLVAGEKPADVYSEIAVRVHEIMKRDSNKDPSKHPQALLAKILIDQVDRKLVKQTVMTSV 795
NL+ + P DVYS +A +V ++D+ + +A++L + RK+VKQTVMT V
Sbjct: 299 NLLPSDVPQDVYSGVAAQVEVFRRQDAKRGVG------VAQVLEGFISRKVVKQTVMTVV 352
Query: 796 YGVTFVGAREQIKRRLEE 813
YGVT G R QI+RRL E
Sbjct: 353 YGVTRYGGRLQIERRLRE 370
>gi|317487306|ref|ZP_07946101.1| DNA-dependent RNA polymerase [Bilophila wadsworthia 3_1_6]
gi|316921496|gb|EFV42787.1| DNA-dependent RNA polymerase [Bilophila wadsworthia 3_1_6]
Length = 882
Score = 296 bits (757), Expect = 4e-77, Method: Compositional matrix adjust.
Identities = 239/814 (29%), Positives = 383/814 (47%), Gaps = 103/814 (12%)
Query: 178 LRRRQVKQETEAWERMVDEYKELEAKMIEKRLAPNLPHIKGLFLGWFGPLSEAIEREQKM 237
L RQ++ E E +R D Y A+ E+ N + K L P++ AI +
Sbjct: 25 LFARQIELEKEMADRGRDRYYTTVARNTERNAEANTSYGKMLLKRGIEPMARAI---SEF 81
Query: 238 QRTKKQKAAYAPH-----IELLPADKVAVIVMHKMMGLVMAGHEDRCVQVVQAAVHIGMA 292
+ KQ A H +E + VA I + K++ + + + ++ +G
Sbjct: 82 MESAKQGGAGRRHKAVGMLEGMDVQVVAFIALRKVLDTF-----SQSMPYQRVSILVGRE 136
Query: 293 IEQEIRIHSFLEKTKNYKR--KKIIADTEEVLSKEKELLRKRVN-SLIKSKRVMEAQKLL 349
+E E ++ E+ + R ++ IA SK ++ R +N + KS V
Sbjct: 137 VEMEKKLTELKEQDPDRYRMTQRYIAG-----SKARKYRRTVLNYAFGKSTTV------- 184
Query: 350 KNEETKPWGRDTQAKLGSRLVELLIETAYVQHPVNPADYSPPDVRPAFRHRFKTILKHPG 409
E +PW LG +L+EL +E+ + H V P+ + + KT+ +
Sbjct: 185 ---EYEPWAEADCLHLGQKLIELAMESCGIFHLVQ---------VPSQKVKGKTMFQ--- 229
Query: 410 QKTTKRYGVVECDPLVLEGLDRSAKH--MLIP-YVPMLVPPKKWKGYNKGGYL--FLPSY 464
+ Y + E P E ++R H M+ P Y+P L+ PK W+G GGY LP
Sbjct: 230 ---STHYSL-EPTPSCREWVERHKDHASMMYPDYLPTLIEPKPWEGAGGGGYYSDALPRL 285
Query: 465 VMRTHGSRKQQEAL-KSVTGNCMKKVFEALDTLGSTKWRVNKQVLSVLESIW-VSGGNIA 522
+ G+ EAL K + M V A++ L +T W +N V V +W + G +A
Sbjct: 286 SLVKTGNLGYLEALDKRIQAGEMDTVINAVNALQNTGWSINPTVFEVASYLWDETDGGVA 345
Query: 523 GLVDRNDVLIPEKP-LSEDMTEV------------------QKWKWSVRKAKKINQERHS 563
GL R+ +P P D+T+ +WK + +++N
Sbjct: 346 GLPPRDGYRLPPCPTCGADLTDTAAARVRHTCLDALPLEDFNEWKKEAFRIRELNISLFG 405
Query: 564 QRCDTELKLSVARRMKDEEGFYYPHNLDFRGRAYPMHPHLNHLSSDVCRGVLEFAEGRPL 623
QR L++A R KDE F++P+ LDFRGR Y + +L +D+ +G+L FAEG+PL
Sbjct: 406 QRIGVAKTLTMAARFKDEPRFFFPYQLDFRGRIYAVPSYLTPQGTDLAKGLLRFAEGKPL 465
Query: 624 GK-SGLRWLKIHLANLFSGGVEKLSHDGRLAFVENHLYEIFDSAENPINGSRWWLTAEDP 682
G +RWL IH +N F G +K+S D R ++V H EI + AE+P + + WW A++P
Sbjct: 466 GTMQAVRWLAIHGSNCF--GNDKVSLDDRHSWVLQHQQEILECAEDPFSHA-WWHEADEP 522
Query: 683 FQCLAACINLSEALKSSSPHSVISHLPIHQDGSCNGLQHYAALGRNTLEAAAVNLVAGEK 742
F LA C+ + ++ +SH+P+ DG+CNGLQ ++ + R+ + +AVNL+ K
Sbjct: 523 FCFLAFCLEWAGYVREGL--DFVSHIPVAMDGTCNGLQIFSLILRDKVGGSAVNLLPAAK 580
Query: 743 PADVYSEIAVRVHEIMKRDSNKDPSK------------HPQALLAKILIDQ-VDRKLVKQ 789
P D+Y +A +V +K D+ DP K + A A IL+D ++RK K+
Sbjct: 581 PQDIYQIVADKVIGKLKTDA-ADPDKDAIVTTKEGKAFYNPAKSAAILLDMGINRKTTKR 639
Query: 790 TVMTSVYGVTFVGAREQIKRRLEEK-----GHITDDRQLFAAACYAAKVTLTALGEIFEA 844
VM YG T RE + +++K + +D + + Y + A+GE A
Sbjct: 640 QVMVLPYGGTKESCREYSEEWVKDKIRNGYPQLPEDVSIRGLSYYLSTHVWDAIGETVIA 699
Query: 845 ARSIMGWLGDCAKVIASENQPVRWTTPLGLPVVQPYCKNERHLIRT----SLQVLALQRE 900
AR M +L D A V+ + P++WTTP G PVVQ Y + I+T S+ L + E
Sbjct: 700 ARDAMKYLQDMAGVMNKLDLPIKWTTPAGFPVVQKYMDKKERRIKTKIGDSIVKLNISEE 759
Query: 901 GNL-VKIRKQRTAFPPNFVHSLDGSHMMMTAVAC 933
+ KQ++A PN+VHSLD + +M T C
Sbjct: 760 STTDLDKPKQKSAISPNYVHSLDAAALMKTVNGC 793
>gi|448106266|ref|XP_004200703.1| Piso0_003299 [Millerozyma farinosa CBS 7064]
gi|448109383|ref|XP_004201334.1| Piso0_003299 [Millerozyma farinosa CBS 7064]
gi|359382125|emb|CCE80962.1| Piso0_003299 [Millerozyma farinosa CBS 7064]
gi|359382890|emb|CCE80197.1| Piso0_003299 [Millerozyma farinosa CBS 7064]
Length = 1253
Score = 293 bits (749), Expect = 4e-76, Method: Compositional matrix adjust.
Identities = 198/624 (31%), Positives = 311/624 (49%), Gaps = 85/624 (13%)
Query: 392 DVRPAFRHRFKTILKHPGQKTTKRYGVVECDPLVLEGLDR-----SAKHMLIPYVPMLVP 446
D PAF I G+ K+ G + P + E S+K + Y+PML
Sbjct: 468 DGYPAF---LSGISIQNGKSKFKKSGAMAIHPYLAEEFKTYSALYSSKSV---YLPMLSF 521
Query: 447 PKKWKGYNKGGYLFLPSYVMRTHGSRKQQEAL----KSVTGNCMKKVFEALDTLGSTKWR 502
PK W ++GGYL + + S +Q AL ++ + F+ LD L ST W
Sbjct: 522 PKAWISPSEGGYL---NDLKPLVSSEEQSTALLYLKEADRSGSLLPAFKCLDILSSTPWA 578
Query: 503 VNKQVLSVLESIWVSGGNIAGLVDRNDVLIP-----EKPLSEDMTEVQKWKWSVRKAKKI 557
+N+ VL+V+ + + + D LIP E P ++ + + + +V K K+
Sbjct: 579 INQAVLNVINQVANIKEGFLKIPPKVDHLIPMVAAKEFPEKQNYSCEKDYLRAVYKYKQD 638
Query: 558 N----QERHSQRC---DTELKLSVARRM-KDEEGFYYPHNLDFRGRAYPMHPHLNHLSSD 609
Q+ H+ +C + E+ L +A K+ + + PHN+DFRGR YPM L+H SD
Sbjct: 639 KKQNLQDYHASKCQRMEFEIFLRLANAFGKNGDIMFIPHNMDFRGRVYPMVSFLSHYQSD 698
Query: 610 VCRGVLEFAEGRPLGKSGLRWLKIHLANLFSGGVEKLSHDGRLAFVENHLYEIFDSAENP 669
+ R +L F E +PLG+SG RWLK HLA LF G +K + + R+ F++ + + DS + P
Sbjct: 699 IVRSLLMFWEPKPLGESGFRWLKYHLAGLF--GKDKWTLEERVRFIDESISLVVDSGKKP 756
Query: 670 INGSRWWLTAEDPFQCLAACINLSEAL----KSSSPHSVISHLPIHQDGSCNGLQHYAAL 725
++G WW A+ P+Q L+ C+ ++ L K + + +PIH DGSCNGLQHYAAL
Sbjct: 757 LDGLMWWKKADKPWQALSLCMEITNVLSYIEKGHNIEDYLCRIPIHLDGSCNGLQHYAAL 816
Query: 726 GRNTLEAAAVNLVAGEKPADVYSEIAVRVHEIMKRDSNKDPSKHPQALLAKILIDQVDRK 785
G + A +VN++ E ++++ +V ++ + N K L A++L + RK
Sbjct: 817 GADKEAAESVNVIPSEHQGSKFNDVYTQVLNLVVEEINHRVQK--GELYAQLLSKILSRK 874
Query: 786 LVKQTVMTSVYGVTFVGAREQIKRRLEE-----KGHITDDRQL--------------FAA 826
L+KQTVMTSVYGVT GA EQI R +E + I + R + ++
Sbjct: 875 LIKQTVMTSVYGVTRHGAMEQINERFKETIKDFQVMIKEGRPIPLTDQEFNNLRTNGYSM 934
Query: 827 ACYAAKVTLTALGEIFEAARSIMGWL-GDCAKVIASEN---------------------- 863
A Y A + + ++ ++F A+ I WL +C ++I S +
Sbjct: 935 ANYLADIVIQSISKLFSGAKKIQDWLMENCYRLITSYDLRLVEELRNQKGHDKFNFFDAT 994
Query: 864 --QPVRWTTPLGLPVVQPYCKNERHLIRTSLQVLALQREG--NLVKIRKQRTAFPPNFVH 919
+P+ WT+P G PVVQ Y I T LQ ++L+ N + +RKQ PNFVH
Sbjct: 995 FYKPMMWTSPTGFPVVQLYRDKAVKRIETPLQNISLKVSAKYNKINLRKQLNGIAPNFVH 1054
Query: 920 SLDGSHMMMTAVACRDAGLHFAGL 943
S+D +HM++T + GL F+ +
Sbjct: 1055 SIDATHMLLTCIESNRRGLSFSSV 1078
>gi|70937775|ref|XP_739650.1| DNA-dependent RNA polymerase [Plasmodium chabaudi chabaudi]
gi|56516804|emb|CAH79196.1| DNA-dependent RNA polymerase, putative [Plasmodium chabaudi
chabaudi]
Length = 485
Score = 291 bits (746), Expect = 1e-75, Method: Compositional matrix adjust.
Identities = 167/494 (33%), Positives = 275/494 (55%), Gaps = 27/494 (5%)
Query: 416 YGVV----ECDPLVLEGLDRSAKHMLIPYVPMLVPPKKWKGYNKGGYLFLPSYVMRTHGS 471
YGV+ C +L S H+ + Y+PM+ PKKW+ ++GG L L + +R +
Sbjct: 2 YGVIHMRESCANFLLSNAINS--HVPLNYLPMICKPKKWED-DQGGMLLLKNNFIRYN-- 56
Query: 472 RKQQEALKSVTGNCMKKVFEALDTLGSTKWRVNKQVLSVLESIWVSGGNIAGL-VDRNDV 530
+ L ++ M ++ + +G+ W+VNK++L +E +++G I + +++N
Sbjct: 57 ---IKPLFNLNVCNMTRIKNIVSEIGNVGWKVNKEILHYIEYAYMNGKTIGKIPLNKNYN 113
Query: 531 L---IPEKPLSEDMTEVQKWKWSVRKAKKINQERHSQRCDTELKLSVARRMKDEEGFYYP 587
L I K + + E++K+ + ++N+ S+R KL+VA+ K+ E Y+P
Sbjct: 114 LPYNIDFKNNNNNNEEIKKYYLLKEEIARLNKCLISERPTFLQKLAVAKTFKENEKIYFP 173
Query: 588 HNLDFRGRAYPMHPHLNHLSSDVCRGVLEFAEGRPLGKSGLRWLKIHLANLFSGGVEKLS 647
HN+DFRGR YP+ PHL+H+ D+CR ++ F++ + +G +GL WLKIHLAN F G +KL+
Sbjct: 174 HNIDFRGRMYPLSPHLHHMGDDICRSLIVFSDDKEIGPNGLYWLKIHLANNF--GKDKLN 231
Query: 648 HDGRLAFVENHLYEIFDSAENPINGSRWWLTAEDPFQCLAACINLSEALKSSSPHSVISH 707
R+ +V+N++ I +NP + +W A++P+Q L+ I+L A+ S P S+
Sbjct: 232 FKKRIEWVDNNIDNIKKLRDNPFDNLEFWGLADNPWQALSVSIDLINAINCSDPSKYKSN 291
Query: 708 LPIHQDGSCNGLQHYAALGRNTLEAAAVNLVAGEKPADVYSEIAVRVHEIMKRDSNKDPS 767
+PI QDG+CNGLQHYAALG++ AVN++ ++P D+Y+ + V +K D + S
Sbjct: 292 IPIQQDGTCNGLQHYAALGKDKDGGRAVNILPSDEPQDIYTVVLDIVINKIKNDMDNGGS 351
Query: 768 KH--------PQALLAKILIDQVDRKLVKQTVMTSVYGVTFVGAREQIKRRLEEK-GHIT 818
K+ PQ + + RK+VKQT+MT YGVT +GA+ Q+K +++ T
Sbjct: 352 KNESSTFLSKPQLANYCFKYNLLKRKVVKQTIMTICYGVTSIGAKNQVKGKIQSMIAKDT 411
Query: 819 DDRQLFAAACYAAKVTLTALGEIFEAARSIMGWLGDCAKVIASENQPVRWTTPLGLPVVQ 878
D + + Y A ++ EIF+ A I W +KV N P+ W +P+GLP Q
Sbjct: 412 DKNTINELSKYIANYIFESISEIFKRAMIIKKWFNHLSKVTNDLNIPITWISPIGLPCEQ 471
Query: 879 PYCKNERHLIRTSL 892
PY R L+ T L
Sbjct: 472 PYRLGTRILVNTPL 485
>gi|345893809|ref|ZP_08844601.1| hypothetical protein HMPREF1022_03261 [Desulfovibrio sp.
6_1_46AFAA]
gi|345045845|gb|EGW49744.1| hypothetical protein HMPREF1022_03261 [Desulfovibrio sp.
6_1_46AFAA]
Length = 898
Score = 291 bits (745), Expect = 1e-75, Method: Compositional matrix adjust.
Identities = 202/631 (32%), Positives = 309/631 (48%), Gaps = 66/631 (10%)
Query: 355 KPWGRDTQAKLGSRLVELLIETAYVQHPVNPADYSPPDVRPAFRHRFKTILKHPGQKTTK 414
+PW R LG +++EL++E+ + H V RP R + G T
Sbjct: 203 RPWSRPDCLHLGQKMLELIMESTGIFHLVR---------RPLPGRRISSAADSSGWVYT- 252
Query: 415 RYGVVECDPLVLEGLDR---SAKHMLIPYVPMLVPPKKWKGYNKGGYLFL----PSYVMR 467
+E P + L R +A M Y+P +VPPK W+G GGY L P +++
Sbjct: 253 ----LELSPSCRDWLQRHRETAGLMYPDYLPTIVPPKPWRGAGGGGYYSLDDTRPLSLVK 308
Query: 468 THGSRKQQEALKSVTGNCMKKVFEALDTLGSTKWRVNKQVLSVLESIW-VSGGNIAGLVD 526
Q++ + + +K V A++ + +T W +N VL V +W V+GG++AGL
Sbjct: 309 LGDMDYQRDLDRRIQNGELKDVLMAVNAMQNTAWSINAPVLEVARRLWDVTGGDVAGLPK 368
Query: 527 RNDVLIPEKPL-SEDMT------------------EVQKWKWSVRKAKKINQERHSQRCD 567
R+ +P P+ D+T E+ WK + + + N +S+R
Sbjct: 369 RDGWRLPLCPVCGADITDSATAYVKHDCLDTLAPEELADWKRAALRIHEKNVANNSRRLT 428
Query: 568 TELKLSVARRMKDEEGFYYPHNLDFRGRAYPMHPHLNHLSSDVCRGVLEFAEGRPLGK-S 626
L++A R + E FYYP+ LDFRGR Y + +LN +D+ +G+L F+EG+PLG
Sbjct: 429 VAKILTLAERFQREHHFYYPYQLDFRGRIYAVPTYLNPQGTDLAKGLLRFSEGKPLGDMK 488
Query: 627 GLRWLKIHLANLFSGGVEKLSHDGRLAFVENHLYEIFDSAENPINGSRWWLTAEDPFQCL 686
+RWL IH +N + G +K+S D R ++V H I A +P+ WW+ A+ PF L
Sbjct: 489 AVRWLAIHGSNTW--GNDKVSLDERHSWVLEHQEHILAQAADPL-ADGWWMEADAPFCFL 545
Query: 687 AACINLSEALKSSSPHSVISHLPIHQDGSCNGLQHYAALGRNTLEAAAVNLVAGEKPADV 746
A C + ++ +S LPI DG+CNGLQ Y+ + R+ + AVNL EKP D+
Sbjct: 546 AFCFEWAGYVREGL--GFLSRLPIALDGTCNGLQIYSLMLRDAVGGHAVNLTPTEKPQDI 603
Query: 747 YSEIAVRVHEIMKRDSN---------KDPSK-HPQALLAKILID-QVDRKLVKQTVMTSV 795
Y +A +V ++K D++ KD + AL A+ L+ +DRK K+ VM
Sbjct: 604 YGIVAEKVRAVLKHDADHGGPAQGRKKDEGPLYDSALCARFLLGLGIDRKTTKRQVMVLP 663
Query: 796 YGVTFVGAREQIKRRLEEK---GHITDDRQLFAAACYAAKVTLTALGEIFEAARSIMGWL 852
YG T R+ K L K + D L Y + + A+G AR M +L
Sbjct: 664 YGGTNESCRKYTKEWLTGKLDGRALPDGLSLHHLNLYLSGLIWEAIGATVIKAREAMSFL 723
Query: 853 GDCAKVIASENQPVRWTTPLGLPVVQPYCKNERHLIRTSLQ----VLALQREG-NLVKIR 907
D A ++A P+RWT+P GLPV+Q Y E+ ++T L L L E + + +
Sbjct: 724 QDTALILAKLKHPLRWTSPTGLPVLQRYMDMEKRRVKTQLGDNLIYLTLHEEKQDSLNVA 783
Query: 908 KQRTAFPPNFVHSLDGSHMMMTAVACRDAGL 938
KQR+A PNFVHSLD + +M T C G+
Sbjct: 784 KQRSAVAPNFVHSLDAAALMFTVRDCLRRGI 814
>gi|150865890|ref|XP_001385284.2| mitohcondrial RNA polymerase [Scheffersomyces stipitis CBS 6054]
gi|149387146|gb|ABN67255.2| mitohcondrial RNA polymerase [Scheffersomyces stipitis CBS 6054]
Length = 1202
Score = 290 bits (742), Expect = 3e-75, Method: Compositional matrix adjust.
Identities = 188/564 (33%), Positives = 282/564 (50%), Gaps = 83/564 (14%)
Query: 440 YVPMLVPPKKWKGYNKGGYLFLPSYVMRTHGSRKQQEAL-KSVTGNCMKKVFEALDTLGS 498
Y PML PPK W GGYL ++ + + + + ++ + + +EAL+ LGS
Sbjct: 478 YFPMLYPPKPWVSPTNGGYLLDLKPIITSSDIKTSMKYIDRANSSGQLNSTYEALNYLGS 537
Query: 499 TKWRVNKQVLSVLESIWVSGGNIAGLVDRNDVLIPEKPLSEDMTEVQKWKWSVRKAKKIN 558
W +N +VL V + +D + IP P + + ++ ++ K K+I
Sbjct: 538 NAWAINSEVLQVFNEVMK--------LDEGFLKIP--PTLKVLKTEEQEDYNDLKTKRIL 587
Query: 559 QERHSQRCDTELKLSVARRMKDEEG--FYYPHNLDFRGRAYPMHPHLNHLSSDVCRGVLE 616
+ V D G + PHN+DFRGRAYPM L H D RG++
Sbjct: 588 FNL----------VHVVANSYDVNGDMLFLPHNVDFRGRAYPMASLLTHYQEDAVRGIMM 637
Query: 617 FAEGRPLGKSGLRWLKIHLANLFSGGVEKLSHDGRLAFVENHLYEIFDSAENPINGSRWW 676
F +PLG +GL WLK LA +F G +KLS + R+ FV+ +L I +SAENP++ + WW
Sbjct: 638 FWHSQPLGSTGLNWLKYQLAGVF--GKDKLSFENRIQFVDENLESIRESAENPLSKNSWW 695
Query: 677 LTAEDPFQCLAACINLSEALKSSSPHSVI----SHLPIHQDGSCNGLQHYAALGRNTLEA 732
A+ P+Q LA CI L+ A + I S +P+HQDGSCNGLQHYAALG +T
Sbjct: 696 KEADKPWQTLALCIELNRAYNYVEQGNKIEEFRSRMPVHQDGSCNGLQHYAALGADTAGG 755
Query: 733 AAVNLVAGEKP----ADVYSEIAVRVHEIMKRD----SNKDPSKHPQALLAKILIDQVDR 784
AVN+V ++ DVYS + V E +++D N D S + L+ I + ++R
Sbjct: 756 EAVNIVPNKENLSQRGDVYSSVLQIVIEKVQKDLTGEGNSD-SSNSNFELSSIAMQILNR 814
Query: 785 KLVKQTVMTSVYGVTFVGAREQIKRRL-----EEKGHITDDRQLFAA------------A 827
KL+KQTVMT+VYGVT G QI R+ E + + +D ++ +
Sbjct: 815 KLIKQTVMTTVYGVTTYGGASQIYLRIKDLIQEHEIKLHNDEKIDLEFLEKLRRYRRPLS 874
Query: 828 CYAAKVTLTALGEIFEAARSIMGWLGD-CAKVIASEN----------------------- 863
Y +K L ++ E+F AR I WL D C + I S +
Sbjct: 875 LYLSKYVLNSISELFSGARIIQDWLVDNCFRAINSFDLETVDFIRHKSTTNNIPSFSSHT 934
Query: 864 --QPVRWTTPLGLPVVQPYCKNERHLIRTSLQVLALQREGNLVKI--RKQRTAFPPNFVH 919
+P+ WT+ G P+VQ Y ++ +I TSLQ +++ + + I +KQ A PNF+H
Sbjct: 935 SFKPMMWTSLSGFPIVQLYKHSKSDVIPTSLQSISINKPQEIAPINKKKQMNAIAPNFIH 994
Query: 920 SLDGSHMMMTAVACRDAGLHFAGL 943
S+D HM+MT VA + A + F +
Sbjct: 995 SIDSIHMLMTCVAAKKANIPFVSV 1018
>gi|26988990|ref|NP_744415.1| DNA-directed RNA polymerase, bacteriophage and mitochondrial type
[Pseudomonas putida KT2440]
gi|24983810|gb|AAN67879.1|AE016420_1 DNA-directed RNA polymerase, bacteriophage and mitochondrial type
[Pseudomonas putida KT2440]
Length = 852
Score = 286 bits (733), Expect = 3e-74, Method: Compositional matrix adjust.
Identities = 223/732 (30%), Positives = 351/732 (47%), Gaps = 104/732 (14%)
Query: 256 ADKVAVIVM-HKMMGLVMAGHEDRCVQVVQAAVHIGMAIEQEIRIHSFLEKTKNYKRKKI 314
AD +A + + H + G+ + R +Q V +V I ++E E+R+ +K +RKK
Sbjct: 97 ADVLAYLTLKHTLAGI----SQPRTLQHV--SVSIAQSVEDEMRLSGIRDK----ERKKY 146
Query: 315 IADTEEVLSKEKELLRKRVNSLIKSKRVMEAQKLLKNEETKPWGRDTQAKLGSRLVELLI 374
++++ + + +R + I + RV A N W + + +G++L+ELL+
Sbjct: 147 ----DQLVERANKRSSQR-HKHIYATRVASALDTWSN-----WSNNDRIHVGTKLLELLM 196
Query: 375 ETAYVQHPVNPADYSPPDVRPAFRHRFKTILKHPGQKTTKRYGVVECDPLVLEGLDR--S 432
+ + H + G+ T K V+ LE + R +
Sbjct: 197 NSVGLIH-----------------------IATNGEGTEKALKYVKPLESTLEWIARKNN 233
Query: 433 AKHMLIP-YVPMLVPPKKWKGYNKGGYL---FLPSYVMRTHGSRKQQEALKSVTGNCMKK 488
ML P Y PM+VPP+ W GGYL P +++T +R E L +V M
Sbjct: 234 VTAMLRPVYEPMVVPPRNWTSPTDGGYLSSSLKPLRMVKTR-NRAYLEELGNVD---MPM 289
Query: 489 VFEALDTLGSTKWRVNKQVLSVLESIWVSGGNIAGLVDRNDVLIPEKPLSEDMTEVQK-- 546
V+ AL+ + +T W++N +L+++ ++W G GL R + P KP D EV +
Sbjct: 290 VYTALNAIQATAWQINTPILNIMTTLWEQGATWCGLPPREGIPQPVKPFDIDTNEVARAA 349
Query: 547 WKWSVRKAKKINQERHSQRCDTELKLSVARRMKDEEGFYYPHNLDFRGRAYPMHPHLNHL 606
W+ + KA N E R + + L +A R Y+P+ LDFRGR Y + PHLN
Sbjct: 350 WRKAAFKAHSDNLEIQGARINVSMSLDIANRYSPFRKIYFPYQLDFRGRIYAV-PHLNPQ 408
Query: 607 SSDVCRGVLEFAEGRPLGKSGLRWLKIHLANLFSGGVEKLSHDGRLAFVENHLYEIFDSA 666
+D +G+L FA G+PLG+ G +WL IH AN+ G +K S + R+ +V +H EI A
Sbjct: 409 GADHTKGLLRFAYGKPLGEHGAKWLAIHGANV--AGYDKASLEDRVKWVHDHQAEILAIA 466
Query: 667 ENPINGSRWW-----LTAEDPFQCLAACINLSEALKSSSPHS--VISHLPIHQDGSCNGL 719
+P W + P+Q LA C+ K H +S LPI DGSC+G+
Sbjct: 467 ADPFQARGWADHVGAQAIDKPWQFLAFCLEW----KGYCEHGDRFVSKLPIAMDGSCSGI 522
Query: 720 QHYAALGRNTLEAAAVNLVAGEKPADVYSEIAVRVHEIMKRDS---NKDPSKHPQALLAK 776
QH++A+ R+ + AAVNLV + PADVY +A +V E D+ +D KH A
Sbjct: 523 QHFSAMLRDEVGGAAVNLVPSDLPADVYGLVAKKVIERAIHDAKHGTEDVLKHDADGKAY 582
Query: 777 I------LIDQ-----VDRKLVKQTVMTSVYGVTFVGAREQI---------KRRLEEKGH 816
+ L Q ++RK+ K++VMT YG G ++Q+ K+ + +G+
Sbjct: 583 VQEGTKNLAQQWTRFGINRKVTKRSVMTLAYGSKEYGFKDQVMEDILDPARKKATDAEGN 642
Query: 817 ITDDRQL------FAAACYAAKVTLTALGEIFEAARSIMGWLGDCAKVIASENQPVRWTT 870
+ D R F AA + AK A+ ++ A M WL D A + A E PV WTT
Sbjct: 643 V-DARHFPFTGDGFRAAGWMAKAIWEAVNQVLVKAGEAMKWLQDAATLAAKEELPVCWTT 701
Query: 871 PLGLPVVQPYCKNERHLIRTSLQV----LALQREGNLVKIRKQRTAFPPNFVHSLDGSHM 926
+G PV+Q Y ++T++ L + E + + RKQ PNFVHS D +H+
Sbjct: 702 AVGFPVMQAYNSVVARRVKTAINGARVRLLMNEEQDALDKRKQSQGISPNFVHSCDAAHL 761
Query: 927 MMTAVACRDAGL 938
M+T V ++GL
Sbjct: 762 MLTVVRGVESGL 773
>gi|345489940|ref|XP_001599095.2| PREDICTED: DNA-directed RNA polymerase, mitochondrial-like, partial
[Nasonia vitripennis]
Length = 622
Score = 285 bits (729), Expect = 8e-74, Method: Compositional matrix adjust.
Identities = 201/590 (34%), Positives = 304/590 (51%), Gaps = 43/590 (7%)
Query: 241 KKQKAAYAPHIELLPADKVAVIVMHKMMGLVMAGHEDRCVQVVQAAVHIGMAIEQEIRIH 300
K+ P++ +L D I+M ++ L M G E + H+G +Q +++
Sbjct: 58 KRASIMLYPYLSILKPDDYICIIMREVRKLGM-GSEMYSLPFNSLCRHMG---DQVYKMY 113
Query: 301 SFLEKTKNYKRKKIIADTEEVLSKEKELLRKRVNSLIKSKRVM----EAQK--LLKNEET 354
K N KI EV K L KR + L + M E K + E
Sbjct: 114 EAKTKQTNGINDKIF----EVHMKYCHWLIKRNDKLNNRLKWMTLESEGNKYGVTLGAEV 169
Query: 355 KPWGRDTQAKLGSRLVELLI-----ETAYVQHPVNPADYSPPDVRPAFRHRFKTILKHPG 409
W + A +G L +++ + Y++ A + PAF FK I +H G
Sbjct: 170 PVWQANIHASIGRFLFNIIVNDLKLDANYIKK--KKAYHGRGHYIPAF---FK-IFRHSG 223
Query: 410 QKTTKRYGVVECDPLVLEGLDRSAKHMLI---PYVPMLVPPKKWKGYNKGGYLFLPSYVM 466
+ V+ P+V + S L VP L PP+ W + GGY+ + ++
Sbjct: 224 VMLKEE---VKPHPIVSKLYRDSQPENLTFDTTLVPSLCPPRPWVSVHSGGYIVTKTDIV 280
Query: 467 R-THGSRKQQEALKSVTGNCMKKVFEALDTLGSTKWRVNKQVLSVLESIWVSGGNIAGLV 525
R TH +Q + L + + ++L+ LGS W VN VL V ++ + G++ V
Sbjct: 281 RVTHMGNQQWDRLINAQPKQLYPALDSLNQLGSIPWAVNTSVLDVAIKVFQNDGSVKLNV 340
Query: 526 DRNDVL---IPEKPLSEDMTEVQKWKWSVRKAKKINQERHSQRCDTELKLSVARRMKDEE 582
+ + I P+ D E +K + + K+ E +S CD +LS+A ++E
Sbjct: 341 PQPPSVLAHILSVPIDADPKEKKKINKAKIELKRKKNEMYSLWCDALYRLSLANHFRNEI 400
Query: 583 GFYYPHNLDFRGRAYPMHPHLNHLSSDVCRGVLEFAEGRPLGKSGLRWLKIHLANLFSGG 642
F+ PHN+DFRGR YP+ PHLNHL SD+ R +L FA +PLG GL WLK+H NL +G
Sbjct: 401 -FWLPHNMDFRGRVYPIPPHLNHLGSDLARSMLVFALKKPLGPKGLDWLKLHTINL-TGF 458
Query: 643 VEKLSHDGRLAFVENHLYEIFDSAENPINGSRWWLTAEDPFQCLAACINLSEALKSSSPH 702
++ S RL + + + I DSAENP+ G WW T+++P+Q LAAC+ +++ALKSS+P
Sbjct: 459 KKRESISERLKYADKIIENILDSAENPLTGKMWWATSDEPWQTLAACMEIAKALKSSNPT 518
Query: 703 SVISHLPIHQDGSCNGLQHYAALGRNTLEAAAVNLVAGEKPADVYSEIAVRVHEIMKRDS 762
++ PIHQDGSCNGLQHYAALGR+ + A +VNL P DVYS +A V E + D+
Sbjct: 519 HYMTGFPIHQDGSCNGLQHYAALGRDQIGAQSVNLFPSHFPQDVYSSVATMVDERRREDA 578
Query: 763 NKDPSKHPQALLAKILIDQVDRKLVKQTVMTSVYGVTFVGAREQIKRRLE 812
+ L+A +L + RK++KQT+MT+VYGVT+ GA+ QI R+L+
Sbjct: 579 SNG------NLIANVLEGFIKRKVIKQTIMTTVYGVTWFGAKLQIARQLK 622
>gi|325272855|ref|ZP_08139190.1| DNA-directed RNA polymerase [Pseudomonas sp. TJI-51]
gi|324102004|gb|EGB99515.1| DNA-directed RNA polymerase [Pseudomonas sp. TJI-51]
Length = 848
Score = 283 bits (724), Expect = 3e-73, Method: Compositional matrix adjust.
Identities = 223/733 (30%), Positives = 349/733 (47%), Gaps = 106/733 (14%)
Query: 256 ADKVAVIVM-HKMMGLVMAGHEDRCVQVVQAAVHIGMAIEQEIRIHSFLEKTKNYKRKKI 314
AD +A + + H + G+ + R +Q V +V I ++E E+R+ +K +RKK
Sbjct: 93 ADVLAYLTLKHTLAGI----SQPRTLQHV--SVSIAQSVEDEMRLSGIRDK----ERKKY 142
Query: 315 IADTEEVLSKEKELLRKRVNSLIKSKRVMEAQKLLKNEETKPWGRDTQAKLGSRLVELLI 374
++++ + + +R + I + RV A N W + + +G++L+ELL+
Sbjct: 143 ----DQLVERANKRSSQR-HKHIYATRVASALDTWSN-----WSNNDRIHVGTKLLELLM 192
Query: 375 ET-AYVQHPVNPADYSPPDVRPAFRHRFKTILKHPGQKTTKRYGVVECDPLVLEGLDR-- 431
+ +Q N G+ T K V+ LE + R
Sbjct: 193 NSVGLIQIATN------------------------GEGTEKALKYVKPLESTLEWIARKN 228
Query: 432 SAKHMLIP-YVPMLVPPKKWKGYNKGGYL---FLPSYVMRTHGSRKQQEALKSVTGNCMK 487
+ ML P Y PM+VPP+ W GGYL P +++T +R E L +V M
Sbjct: 229 NVTAMLRPVYEPMVVPPRNWTSPTDGGYLSSSLKPLRMVKTR-NRAYLEELGNVD---MP 284
Query: 488 KVFEALDTLGSTKWRVNKQVLSVLESIWVSGGNIAGLVDRNDVLIPEKPLSEDMTEVQK- 546
V+ AL+ + +T W++N +L ++ ++W G GL R + P KP D EV +
Sbjct: 285 MVYTALNAIQATAWQINTPILKIMTTLWEQGSTWCGLPPREGIPQPAKPFDIDTNEVARA 344
Query: 547 -WKWSVRKAKKINQERHSQRCDTELKLSVARRMKDEEGFYYPHNLDFRGRAYPMHPHLNH 605
W+ + K N E R + + L +A R Y+P+ LDFRGR Y + PHLN
Sbjct: 345 AWRKAAFKVHSDNLEIQGARINVSMSLDIANRYSPFRKIYFPYQLDFRGRIYAV-PHLNP 403
Query: 606 LSSDVCRGVLEFAEGRPLGKSGLRWLKIHLANLFSGGVEKLSHDGRLAFVENHLYEIFDS 665
+D +G+L FA G+PLG+ G +WL IH AN+ G +K S + R+ +V +H EI
Sbjct: 404 QGADHTKGLLRFAYGKPLGEHGAKWLAIHGANV--AGYDKASLEDRVKWVHDHQAEILAI 461
Query: 666 AENPINGSRWW-----LTAEDPFQCLAACINLSEALKSSSPHS--VISHLPIHQDGSCNG 718
A +P W + P+Q LA C+ K H +S LPI DGSC+G
Sbjct: 462 AADPFQARGWADHVGAQAIDKPWQFLAFCLEW----KGYCEHGDRFVSKLPIAMDGSCSG 517
Query: 719 LQHYAALGRNTLEAAAVNLVAGEKPADVYSEIAVRVHEIMKRDS---NKDPSKHPQALLA 775
+QH++A+ R+ + AAVNLV + PADVY +A +V E D+ +D KH A
Sbjct: 518 IQHFSAMLRDEVGGAAVNLVPSDLPADVYGLVAKKVIERAIHDAKHGTEDVLKHDADGKA 577
Query: 776 KI------LIDQ-----VDRKLVKQTVMTSVYGVTFVGAREQI---------KRRLEEKG 815
+ L Q ++RK+ K++VMT YG G ++Q+ K+ + +G
Sbjct: 578 YVQEGTKNLAQQWTRFGINRKVTKRSVMTLAYGSKEYGFKDQVMEDILDPARKKATDAEG 637
Query: 816 HITDDRQL------FAAACYAAKVTLTALGEIFEAARSIMGWLGDCAKVIASENQPVRWT 869
++ D R F AA + AK A+ ++ A M WL D A + A E PV WT
Sbjct: 638 NV-DARHFPFTGDGFRAAGWMAKAIWEAVNQVLVKAGEAMKWLQDAATLAAKEELPVCWT 696
Query: 870 TPLGLPVVQPYCKNERHLIRTSLQV----LALQREGNLVKIRKQRTAFPPNFVHSLDGSH 925
T +G PV+Q Y ++T++ L + E + + RKQ PNFVHS D +H
Sbjct: 697 TAVGFPVMQAYNSVVARRVKTAINGARVRLLMNEEQDSLDKRKQSQGISPNFVHSCDAAH 756
Query: 926 MMMTAVACRDAGL 938
+M+T V ++GL
Sbjct: 757 LMLTVVRGVESGL 769
>gi|89148158|gb|ABD62822.1| mitochondrial single-subunit RNA polymerase [Heterolobosea sp. OSA]
Length = 310
Score = 282 bits (721), Expect = 7e-73, Method: Compositional matrix adjust.
Identities = 143/303 (47%), Positives = 204/303 (67%), Gaps = 20/303 (6%)
Query: 606 LSSDVCRGVLEFAEGRPLG-----------KSGLRWLKIHLANLFSGGVEKLSHDGRLAF 654
L SD+ RG+L+FA+ P+G + G+ WLKIHLANL G +KLS D R+ +
Sbjct: 1 LGSDLNRGLLKFAKKVPIGAKYDFNYYINTRRGIFWLKIHLANLC--GQDKLSFDDRIKY 58
Query: 655 VENHLYEIFDSAENPINGSRWWLTAEDPFQCLAACINLSEALKSSSPHSVISHLPIHQDG 714
+++++ I DSA++P++G RWWL +E+P+Q LA+C L+ ++S +P S +P+ DG
Sbjct: 59 IDDNISNIMDSADHPLSGKRWWLDSENPWQSLASCFELTNVIRSPTPELFESQIPVQMDG 118
Query: 715 SCNGLQHYAALGRNTLEAAAVNLVAGEKPADVYSEIAVRVHEIMKRDSNKDPSKHPQALL 774
SCNGLQHYAALGR+ L A VNL+ KP DVYS + V + ++ D+ ++HP L
Sbjct: 119 SCNGLQHYAALGRDNLGALHVNLLPTIKPMDVYSGVLNVVKKNIEMDAK---NEHP---L 172
Query: 775 AKILIDQVDRKLVKQTVMTSVYGVTFVGAREQIKRRLEEKGHITDDRQLFAAACYAAKVT 834
A IL V R +KQTVMTSVYGVT+VGAREQI++RL+E+ I D+ + ACY A VT
Sbjct: 173 ATILNGNVYRSTIKQTVMTSVYGVTWVGAREQIQKRLKERKEI-DEEMAYKCACYLATVT 231
Query: 835 LTALGEIFEAARSIMGWLGDCAKVIASENQPVRWTTPLGLPVVQPYCKNERHLIRTSLQV 894
L +LG++F +A++IM WL + A +I+S ++PV W +PLGLPVVQPY +H I T LQ
Sbjct: 232 LKSLGQVFSSAKAIMEWLNELAHLISSHDKPVMWVSPLGLPVVQPYRSKRKHTINTILQK 291
Query: 895 LAL 897
+ +
Sbjct: 292 VTM 294
>gi|294462350|gb|ADE76724.1| unknown [Picea sitchensis]
Length = 255
Score = 281 bits (720), Expect = 9e-73, Method: Compositional matrix adjust.
Identities = 129/186 (69%), Positives = 161/186 (86%)
Query: 758 MKRDSNKDPSKHPQALLAKILIDQVDRKLVKQTVMTSVYGVTFVGAREQIKRRLEEKGHI 817
M+RD+ KDP+ A A++L+ QVDRKLVKQTVMTSVYGVT++GAR+QI++RL+E+G I
Sbjct: 1 MQRDALKDPATDRDAECARVLLGQVDRKLVKQTVMTSVYGVTYIGARDQIRKRLKERGCI 60
Query: 818 TDDRQLFAAACYAAKVTLTALGEIFEAARSIMGWLGDCAKVIASENQPVRWTTPLGLPVV 877
D+ LF+A+CYAA+ TLTAL E+F AARSIM WLGDCAK+IASEN PVRWTTPLGLPVV
Sbjct: 61 ADEVALFSASCYAARTTLTALSEMFNAARSIMTWLGDCAKIIASENHPVRWTTPLGLPVV 120
Query: 878 QPYCKNERHLIRTSLQVLALQREGNLVKIRKQRTAFPPNFVHSLDGSHMMMTAVACRDAG 937
QPY K R L+RTSLQVLAL++E + V +++Q++AFPPNFVHSLDGSHMMMTA+AC++AG
Sbjct: 121 QPYRKFARQLVRTSLQVLALRQETDKVMVKRQKSAFPPNFVHSLDGSHMMMTALACKEAG 180
Query: 938 LHFAGL 943
L FAG+
Sbjct: 181 LSFAGV 186
>gi|254504157|ref|ZP_05116308.1| DNA-dependent RNA polymerase domain protein [Labrenzia alexandrii
DFL-11]
gi|254505310|ref|ZP_05117458.1| DNA-dependent RNA polymerase domain protein [Labrenzia alexandrii
DFL-11]
gi|222436154|gb|EEE42836.1| DNA-dependent RNA polymerase domain protein [Labrenzia alexandrii
DFL-11]
gi|222440228|gb|EEE46907.1| DNA-dependent RNA polymerase domain protein [Labrenzia alexandrii
DFL-11]
Length = 573
Score = 281 bits (718), Expect = 1e-72, Method: Compositional matrix adjust.
Identities = 178/501 (35%), Positives = 258/501 (51%), Gaps = 33/501 (6%)
Query: 456 GGYLFLPSYVMRTHGSRKQQEALKSVTGNCMKKVFEALDTLGSTKWRVNKQVLSVLESIW 515
GGY + +MR + +++ + ++ L+ LG+T R+N++V +VL W
Sbjct: 10 GGYYMIQEDIMRCGIFKHSGSNPNAISDDALR----TLNALGATPKRINQRVFAVLNEAW 65
Query: 516 VSGGNIAGLVDRNDVLIPEKPLSEDMTEVQKWKWSVRKAKKINQERH-------SQRCDT 568
++G IAGL +D ++P + E+ ++ K + S KA + +E H S R
Sbjct: 66 MAGDQIAGLPSAHDPVVPGRKEDEEWEDMSKDEQSEHKASR--EEAHMEIVRLGSSRKQF 123
Query: 569 ELKLSVARRMKDEEGFYYPHNLDFRGRAYPMHPHLNHLSSDVCRGVLEFAEGRPLGKSGL 628
KLSVAR M D FY P LDFRGR YPM + DVC+G++EFA G+PLG GL
Sbjct: 124 LDKLSVAREMADHPEFYEPFFLDFRGRFYPMCETFHSQGDDVCKGLIEFARGKPLGSRGL 183
Query: 629 RWLKIHLANLFSGGVEKLSHDGRLAFVENHLYEIFDSAENPINGSRWWLTAEDPFQCLAA 688
WL + AN F G +KL D R + +HL +I + A +P++GSRWW A++P+ LA
Sbjct: 184 YWLAVRAANCF--GEDKLPLDERYQWTLDHLDQIIECAMDPLDGSRWWTQADEPWGFLAT 241
Query: 689 CINLSEALK-SSSPHSVISHLPIHQDGSCNGLQHYAALGRNTLEAAAVNLVAGEKPADVY 747
C L EA +SHL I DGSCNGLQH +A+ ++ + A A NL+A + D+Y
Sbjct: 242 CFELDEATALGDRSVEYVSHLAIPLDGSCNGLQHLSAMSKDPVGAKATNLMARAQREDIY 301
Query: 748 SEIAVRVHEIMKRDSNKDPSKHPQALLAKILIDQV-DRKLVKQTVMTSVYGVTFVGAREQ 806
E+A I+ D Q L +L D RK+VK+ VMT+ YGVT G
Sbjct: 302 LEVAASARRILASDITNGVEWSAQWL--AVLEDTAKGRKVVKRAVMTTPYGVTERG---- 355
Query: 807 IKRRLEEKGHI--------TDDRQLFAAACYAAKVTLTALGEIFEAARSIMGWLGDCAKV 858
I +L + GH+ + +AAA Y V + AL E AA+ +M W+ CA+
Sbjct: 356 IATQLYKDGHVKLLAGYKEMTKPEKWAAASYLKDVIVKALSETIAAAKQVMAWIQTCAEK 415
Query: 859 IASENQPVRWTTPLGLPVVQPYCKNERHLIRTSLQVLALQREGNLVKI--RKQRTAFPPN 916
+A +N P+ W TP + Q Y R ++T L E L + +KQ A PN
Sbjct: 416 MADQNVPLVWKTPNNNLITQSYFNLARSKVKTLYGEQVLWSEDPLSGLNPKKQALASAPN 475
Query: 917 FVHSLDGSHMMMTAVACRDAG 937
+HS D +H+ T A DAG
Sbjct: 476 LIHSFDAAHLSRTVNALADAG 496
>gi|261334540|emb|CBH17534.1| mitochondrial DNA-directed RNA polymerase,putative [Trypanosoma
brucei gambiense DAL972]
Length = 1317
Score = 280 bits (717), Expect = 2e-72, Method: Compositional matrix adjust.
Identities = 186/524 (35%), Positives = 263/524 (50%), Gaps = 58/524 (11%)
Query: 454 NKGGYLFLPSYVMRTHGSRKQQEALKSVTGNCMKKVFEALDTLGSTKWRVNKQVLSVLES 513
+K Y LPS ++ GS Q + + +ALD + WR++K +L V E+
Sbjct: 732 DKSVYNVLPSVAVK--GSTNQAMIISQA------PMMKALDAISRVPWRISKYMLHVQEA 783
Query: 514 IWVSGGNIAGL-----------VDRNDVLIPEKPLSEDMTEVQKWKWSVRKAKKINQ--- 559
I G + R D+ + +D + + + R+ ++ Q
Sbjct: 784 IVREGYGFGKIRPAFYPLHYCAKSRGDISYESTGMDDDDDKTEVYNLQQRREYELQQDED 843
Query: 560 -----ERHSQRCDTELKLSVARRMKDEEGFYYPHNLDFRGRAYPMHPHLNHLSSDVCRGV 614
E S R L AR + Y+P+++DFRGR YP+ LNH SD R +
Sbjct: 844 WKNLSELRSNRIHYLQALRQARSLVQFSHIYFPNSMDFRGRMYPLPGRLNHTGSDPFRAL 903
Query: 615 LEFAEGRPLGKSGLRWLKIHLANLFSGGVEKLSHDGRLAFVENHLYEIFDSAENPINGSR 674
LE+AE +PLGK GL WLK+HLAN G+ KLS D R+ +V H+ ++ SAE P+ G +
Sbjct: 904 LEYAEPKPLGKEGLYWLKVHLANKM--GMSKLSFDERVHYVNEHIDDVVCSAEQPLYGDK 961
Query: 675 WWLTAEDPFQCLAACINLSEALK-SSSPHSVISHLPIHQDGSCNGLQHYAALGRNTLEAA 733
WW A +P QCL AC L++ALK S P + +S +P+ DGS NGLQHY+A+GR+ A
Sbjct: 962 WWQEAAEPMQCLMACKELADALKCSQGPENFLSRIPVAVDGSYNGLQHYSAIGRDAFGAT 1021
Query: 734 AVNLVAGEKPADVYSEIAVRVHEIMKRDSNKDPSKHPQALLAKILI-------DQVDRKL 786
VNLV E+PAD Y+ I + +K D+ +D HP A + L D + RK
Sbjct: 1022 LVNLVPSERPADAYTGILKEMMSSIKADAERD---HPVA--QRCLGTGKGQDRDHIKRKT 1076
Query: 787 VKQTVMTSVYGVTFVGAREQIKRRL--EEKGH----ITDDRQLFAAACYAAKVTLTALGE 840
+K+ +MT VYGVT G EQI L + K H TD R++ A Y + L +LG
Sbjct: 1077 IKRPIMTQVYGVTGYGMSEQILDELVKQNKNHGLWTSTDMREM---ADYLREKVLESLGI 1133
Query: 841 IFEAARSIMGWLGDCAKVIASENQPVR------WTTPLGLPVVQPYCKNERHLIRTSLQV 894
F ++ W+ D +I E QP WTTPLGL V QPY + +I T
Sbjct: 1134 TFRETQNCRRWITDVTNIIW-EVQPAELRTALCWTTPLGLVVRQPYKMRKEMMIFTVHGC 1192
Query: 895 LALQREGNLVKIRKQRTAFPPNFVHSLDGSHMMMTAVACRDAGL 938
+ RKQ TA PN +HSLD SH+ MTA+ ++ GL
Sbjct: 1193 ARVPANAFSAASRKQLTAIAPNLIHSLDASHLAMTAIEMQNLGL 1236
>gi|71755477|ref|XP_828653.1| mitochondrial DNA-directed RNA polymerase [Trypanosoma brucei
TREU927]
gi|70834039|gb|EAN79541.1| mitochondrial DNA-directed RNA polymerase [Trypanosoma brucei brucei
strain 927/4 GUTat10.1]
Length = 1274
Score = 280 bits (716), Expect = 2e-72, Method: Compositional matrix adjust.
Identities = 186/524 (35%), Positives = 263/524 (50%), Gaps = 58/524 (11%)
Query: 454 NKGGYLFLPSYVMRTHGSRKQQEALKSVTGNCMKKVFEALDTLGSTKWRVNKQVLSVLES 513
+K Y LPS ++ GS Q + + +ALD + WR++K +L V E+
Sbjct: 689 DKSVYNVLPSVAVK--GSTNQAMIISQA------PMMKALDAISRVPWRISKYMLHVQEA 740
Query: 514 IWVSGGNIAGL-----------VDRNDVLIPEKPLSEDMTEVQKWKWSVRKAKKINQ--- 559
I G + R D+ + +D + + + R+ ++ Q
Sbjct: 741 IVREGYGFGKIRPAFYPLHYCAKSRGDISYESTGMDDDDDKTEVYNLQQRREYELQQDED 800
Query: 560 -----ERHSQRCDTELKLSVARRMKDEEGFYYPHNLDFRGRAYPMHPHLNHLSSDVCRGV 614
E S R L AR + Y+P+++DFRGR YP+ LNH SD R +
Sbjct: 801 WKNLSELRSNRIHYLQALRQARSLVQFSHIYFPNSMDFRGRMYPLPGRLNHTGSDPFRAL 860
Query: 615 LEFAEGRPLGKSGLRWLKIHLANLFSGGVEKLSHDGRLAFVENHLYEIFDSAENPINGSR 674
LE+AE +PLGK GL WLK+HLAN G+ KLS D R+ +V H+ ++ SAE P+ G +
Sbjct: 861 LEYAEPKPLGKEGLYWLKVHLANKM--GMSKLSFDERVHYVNEHIDDVVCSAEQPLYGDK 918
Query: 675 WWLTAEDPFQCLAACINLSEALK-SSSPHSVISHLPIHQDGSCNGLQHYAALGRNTLEAA 733
WW A +P QCL AC L++ALK S P + +S +P+ DGS NGLQHY+A+GR+ A
Sbjct: 919 WWQEAAEPMQCLMACKELADALKCSQGPENFLSRIPVAVDGSYNGLQHYSAIGRDAFGAT 978
Query: 734 AVNLVAGEKPADVYSEIAVRVHEIMKRDSNKDPSKHPQALLAKILI-------DQVDRKL 786
VNLV E+PAD Y+ I + +K D+ +D HP A + L D + RK
Sbjct: 979 LVNLVPSERPADAYTGILKEMMSSIKADAERD---HPVA--QRCLGTGKGQDRDHIKRKT 1033
Query: 787 VKQTVMTSVYGVTFVGAREQIKRRL--EEKGH----ITDDRQLFAAACYAAKVTLTALGE 840
+K+ +MT VYGVT G EQI L + K H TD R++ A Y + L +LG
Sbjct: 1034 IKRPIMTQVYGVTGYGMSEQILDELVKQNKNHGLWTSTDMREM---ADYLREKVLESLGI 1090
Query: 841 IFEAARSIMGWLGDCAKVIASENQPVR------WTTPLGLPVVQPYCKNERHLIRTSLQV 894
F ++ W+ D +I E QP WTTPLGL V QPY + +I T
Sbjct: 1091 TFRETQNCRRWITDVTNIIW-EVQPAELRTALCWTTPLGLVVRQPYKMRKEMMIFTVHGC 1149
Query: 895 LALQREGNLVKIRKQRTAFPPNFVHSLDGSHMMMTAVACRDAGL 938
+ RKQ TA PN +HSLD SH+ MTA+ ++ GL
Sbjct: 1150 ARVPANAFSAASRKQLTAIAPNLIHSLDASHLAMTAIEMQNLGL 1193
>gi|224120774|ref|XP_002330948.1| predicted protein [Populus trichocarpa]
gi|222873142|gb|EEF10273.1| predicted protein [Populus trichocarpa]
Length = 397
Score = 280 bits (716), Expect = 3e-72, Method: Compositional matrix adjust.
Identities = 138/289 (47%), Positives = 193/289 (66%), Gaps = 30/289 (10%)
Query: 173 RKFNLLRRRQVKQETEAWERMVDEYKELEAKMIEKRLAPNLPHIKGLFLGWFGPLSEAIE 232
RK +LRRRQVK E EAWE EYKEL M E +LAPNLP++K LFLGWF P ++AI
Sbjct: 130 RKHRVLRRRQVKIEAEAWELATKEYKELLKDMCEHKLAPNLPYMKSLFLGWFEPFTDAIA 189
Query: 233 REQKMQRTKKQKAAYAPHIELLPADKVAVIVMHKMMGLVMAGHEDRCVQVVQAAVHIGMA 292
+EQ++ RT K + YAP+ +LLPADK++VI MH++ +VM G E C +VV AA IG A
Sbjct: 190 KEQELIRTGKSRQGYAPYFDLLPADKMSVIAMHQLAAMVMTGGEHGCARVVTAACMIGDA 249
Query: 293 IEQEIRIHSFLEKTKNYKRKKIIADTEEVLSKEKELLRKRVNSLIKSKRVMEAQKLLKN- 351
IEQE E+E LRK+V LIK +++ +K++K
Sbjct: 250 IEQE----------------------------EQENLRKKVTDLIKKQKLPAVRKIVKGK 281
Query: 352 EETKPWGRDTQAKLGSRLVELLIETAYVQHPVNPADYSPPDVRPAFRHRFKTILKHPGQK 411
+++KPW D +AK+GSRL+ELL++TAY+Q P + SP + RPAF H F+T+ + +K
Sbjct: 282 DDSKPWNADARAKVGSRLIELLLQTAYIQPPCDQLADSPSEPRPAFVHTFRTV-SYENKK 340
Query: 412 TTKRYGVVECDPLVLEGLDRSAKHMLIPYVPMLVPPKKWKGYNKGGYLF 460
K+YGV++CDPLVL+GL+++A+HM+IPY+PMLVPP +W+GY Y++
Sbjct: 341 GAKKYGVIQCDPLVLKGLEKTARHMVIPYMPMLVPPLRWRGYVNLFYIY 389
>gi|342185708|emb|CCC95193.1| unnamed protein product [Trypanosoma congolense IL3000]
gi|343472868|emb|CCD15094.1| unnamed protein product [Trypanosoma congolense IL3000]
Length = 1278
Score = 278 bits (712), Expect = 8e-72, Method: Compositional matrix adjust.
Identities = 191/529 (36%), Positives = 266/529 (50%), Gaps = 64/529 (12%)
Query: 454 NKGGYLFLPSYVMRTHGSRKQQEALKSVTGNCMKKVFEALDTLGSTKWRVNKQVLSVLES 513
+K Y LPS ++ GS Q + + +ALD + WR++K +L V E+
Sbjct: 689 DKSVYNVLPSVAVK--GSTNQAMIISQA------PMMKALDAISRVPWRISKYMLHVQEA 740
Query: 514 IWVSGGNIAGL-----------VDRNDVLIPEKPLSEDMTEVQKWKWSV-----RKAKKI 557
I G + R D+ P SE++++ + V R+ +
Sbjct: 741 IVREGYGFGKIRPAFYPLHYCAKSRGDI-CHTLPGSENVSDADDDRAEVYNLQQRREYDL 799
Query: 558 NQ--------ERHSQRCDTELKLSVARRMKDEEGFYYPHNLDFRGRAYPMHPHLNHLSSD 609
Q E S R L AR + Y+P+++DFRGR YP+ LNH SD
Sbjct: 800 QQDEDWKSLSELRSNRIHYLQALRQARSLVQFSHIYFPNSMDFRGRMYPLPGRLNHTGSD 859
Query: 610 VCRGVLEFAEGRPLGKSGLRWLKIHLANLFSGGVEKLSHDGRLAFVENHLYEIFDSAENP 669
R +LE+AE +PLGK GL WLK+HLAN G+ KLS D R+ +V H+ ++ SAE P
Sbjct: 860 PFRALLEYAEPKPLGKEGLYWLKVHLANKM--GMSKLSFDERVHYVNEHIEDVVRSAEQP 917
Query: 670 INGSRWWLTAEDPFQCLAACINLSEALK-SSSPHSVISHLPIHQDGSCNGLQHYAALGRN 728
+ G +WW A +P QCL AC L++ALK S P + +S +P+ DGS NGLQHY+A+GR+
Sbjct: 918 LYGDKWWQEAAEPMQCLMACKELADALKYSQGPENFLSRIPVAVDGSYNGLQHYSAIGRD 977
Query: 729 TLEAAAVNLVAGEKPADVYSEIAVRVHEIMKRDSNKDPSKHPQALLAKILI-------DQ 781
A VNLV E+PAD Y+ I + + D+N+D HP A + L D
Sbjct: 978 AFGATLVNLVPSERPADAYTGILKEMMSSITADANRD---HPVA--QRCLGTGKGQDRDH 1032
Query: 782 VDRKLVKQTVMTSVYGVTFVGAREQIKRRL--EEKGH----ITDDRQLFAAACYAAKVTL 835
+ RK +K+ +MT VYGVT G EQI L + K H TD R++ A Y + L
Sbjct: 1033 IKRKTIKRPIMTQVYGVTGYGMSEQILDELVKQNKNHGLWTSTDMREM---ADYLREKVL 1089
Query: 836 TALGEIFEAARSIMGWLGDCAKVIASENQPVR------WTTPLGLPVVQPYCKNERHLIR 889
+LG F ++ W+ D +I E QP WTTPLGL V QPY N+ LI
Sbjct: 1090 ESLGITFRETQNCRRWITDVTNIIW-EVQPAELRTALCWTTPLGLVVRQPYKMNKEMLIF 1148
Query: 890 TSLQVLALQREGNLVKIRKQRTAFPPNFVHSLDGSHMMMTAVACRDAGL 938
T + RKQ TA PN +HSLD SH+ MTA+ ++ GL
Sbjct: 1149 TVHGCARVPGNAFSAASRKQLTAIAPNLIHSLDASHLAMTAIEMQNLGL 1197
>gi|15843563|gb|AAK97228.2|AF303582_1 RNA polymerase [Trypanosoma brucei]
Length = 1274
Score = 278 bits (711), Expect = 1e-71, Method: Compositional matrix adjust.
Identities = 184/524 (35%), Positives = 262/524 (50%), Gaps = 58/524 (11%)
Query: 454 NKGGYLFLPSYVMRTHGSRKQQEALKSVTGNCMKKVFEALDTLGSTKWRVNKQVLSVLES 513
+K Y LPS ++ GS Q + + +ALD + WR++K +L V E+
Sbjct: 689 DKSVYNVLPSVAVK--GSTNQAMIISQA------PMMKALDAISRVPWRISKYMLHVQEA 740
Query: 514 IWVSGGNIAGL-----------VDRNDVLIPEKPLSEDMTEVQKWKWSVRKAKKINQ--- 559
I G + R D+ + +D + + + R+ ++ Q
Sbjct: 741 IVREGYGFGKIRPAFYPLHYCAKSRGDISYESTGMDDDDDKTEVYNLQQRREYELQQDED 800
Query: 560 -----ERHSQRCDTELKLSVARRMKDEEGFYYPHNLDFRGRAYPMHPHLNHLSSDVCRGV 614
E S R L AR + Y+P+++DFRGR YP+ LNH SD R +
Sbjct: 801 WKNLSELRSNRIHYLQALRQARSLVQFSHIYFPNSMDFRGRMYPLPGRLNHTGSDPFRAL 860
Query: 615 LEFAEGRPLGKSGLRWLKIHLANLFSGGVEKLSHDGRLAFVENHLYEIFDSAENPINGSR 674
LE+AE +PLGK GL WLK+HLAN G+ KLS D R+ +V H+ ++ SAE P+ G +
Sbjct: 861 LEYAEPKPLGKEGLYWLKVHLANKM--GMSKLSFDERVHYVNEHIDDVVCSAEQPLYGDK 918
Query: 675 WWLTAEDPFQCLAACINLSEALK-SSSPHSVISHLPIHQDGSCNGLQHYAALGRNTLEAA 733
WW A +P QCL AC L++ALK S P + +S +P+ DGS NGLQHY+A+GR+ A
Sbjct: 919 WWQEAAEPMQCLMACKELADALKCSQGPENFLSRIPVAVDGSYNGLQHYSAIGRDAFGAT 978
Query: 734 AVNLVAGEKPADVYSEIAVRVHEIMKRDSNKDPSKHPQALLAKILI-------DQVDRKL 786
VNLV E+PAD Y+ I + +K D+ +D L + L D + RK
Sbjct: 979 LVNLVPSERPADAYTGILKEMMSSIKADAERD-----HQWLQRCLGTGKGQDRDHIKRKT 1033
Query: 787 VKQTVMTSVYGVTFVGAREQIKRRL--EEKGH----ITDDRQLFAAACYAAKVTLTALGE 840
+K+ +MT VYGVT G EQI L + K H TD R++ A Y + L +LG
Sbjct: 1034 IKRPIMTQVYGVTGYGMSEQILDELVKQNKNHGLWTSTDMREM---ADYLREKVLESLGI 1090
Query: 841 IFEAARSIMGWLGDCAKVIASENQPVR------WTTPLGLPVVQPYCKNERHLIRTSLQV 894
F ++ W+ D + +I E QP WTTPLGL V QPY + +I T
Sbjct: 1091 TFRETQNCRRWITDVSNIIW-EVQPAELRTALCWTTPLGLVVRQPYKMRKEMMIFTVHGC 1149
Query: 895 LALQREGNLVKIRKQRTAFPPNFVHSLDGSHMMMTAVACRDAGL 938
+ RKQ TA PN +HSLD SH+ MTA+ ++ GL
Sbjct: 1150 ARVPANAFSAASRKQLTAIAPNLIHSLDASHLAMTAIEMQNLGL 1193
>gi|383389390|gb|AFH14406.1| RNA polymerase [Vibrio phage VP3]
Length = 883
Score = 271 bits (693), Expect = 1e-69, Method: Compositional matrix adjust.
Identities = 225/756 (29%), Positives = 358/756 (47%), Gaps = 113/756 (14%)
Query: 249 PHIE-----LLPADKVAVIVMHKMMGLVMAGHEDRCVQVVQAAVHIGMAIEQEIRIHSFL 303
PH+ ++ + A I++ + ++ ++ V V + A+ IG IE EIR
Sbjct: 98 PHVSKGYFAMIKPESAAFIIVKTTLNILA---KEESVPVQRVAMAIGGNIEDEIRFGRIR 154
Query: 304 -EKTKNYKRKKIIADTEEVLSKEKELLRKRVNSLIKSKRVMEA------QKLLKNEETKP 356
E+ K++K + K L KR N I K MEA K N +
Sbjct: 155 DEEIKHFKERV------------KPNLDKR-NGFIYKKAYMEAVEAGMQDKGELNSTHEA 201
Query: 357 WGRDTQAKLGSRLVELLIE-TAYVQHPVNPADYSPPDVRPAFRHRFKTILKHPGQKTTKR 415
W +D + +G R +E+LIE T VQ +FK I K
Sbjct: 202 WEKDVKFHVGIRAIEMLIEATGMVQ----------------LERKFKGI-------PDKD 238
Query: 416 YGVVECDPLVLEGLDRSAKHM--LIP-YVPMLVPPKKWKGYNKGGYLF---LPSYVMRTH 469
+ + P +E L A + + P Y PM+V PK+W G GGY P ++R
Sbjct: 239 HEALHLAPEYVEKLTNRAHALAGISPMYQPMIVKPKRWTGVQGGGYWAKGRRPLNLIRV- 297
Query: 470 GSRKQQEALKSVTGNCMKKVFEALDTLGSTKWRVNKQVLSVLESIWVSGGN--IAGLVDR 527
GS++ + + V M +V++A++T+ T WR+NK VL+V+ ++ V+ N + +
Sbjct: 298 GSKRALDRYRQVD---MPEVYDAINTIQETAWRINKDVLAVVNNV-VTWANCPVEDVPSI 353
Query: 528 NDVLIPEKPLSEDMTE--VQKWKWSVRKAKKINQERHSQRCDTELKLSVARRMKDEEGFY 585
+ + +PEKP D E ++KWK + + + R S+R E LS A + Y
Sbjct: 354 DKLALPEKPEDIDNNEESLKKWKKAAAAIYRKEKARQSRRISLEFALSQANKFSKYNEIY 413
Query: 586 YPHNLDFRGRAYPMHPHLNHLSSDVCRGVLEFAEGRPLGKSGLRWLKIHLANLFSGGVEK 645
+P+N+D+RGR Y + P N +D+ +G+L FA+ P+G G WL +H AN GV+K
Sbjct: 414 FPYNMDWRGRVYAI-PMFNPQGNDMVKGLLTFAKKVPVGIDGGYWLAVHGAN--CAGVDK 470
Query: 646 LSHDGRLAFVENHLYEIFDSAENPINGSRWWLTAEDPFQCLAACINLSEALKSSSPHSVI 705
+S + R+ +V ++ I SAE P++ + WW + PF LA C + +K+ S
Sbjct: 471 VSLEDRVKWVNDNEANIIASAEAPLDFT-WWAEQDSPFCFLAFCFEWAAYVKAGKKPSFE 529
Query: 706 SHLPIHQDGSCNGLQHYAALGRNTLEAAAVNLVAGEKPADVYSEIAVRVHEIMKR---DS 762
S LP+ DG+C+GLQH++A+ R+ + AAVNL+ +KP D+Y +AV+V+E+++
Sbjct: 530 SSLPLAFDGTCSGLQHFSAMLRDEIGGAAVNLLPADKPQDIYGIVAVKVNEVLRDLVISG 589
Query: 763 NKDPSK----------------HPQALLAKILIDQVDRKLVKQTVMTSVYGVTFVGAREQ 806
+D + + L A+ L V R + K++VMT YG G +Q
Sbjct: 590 TEDEMQTLEDKKTGEITERLVLGTRTLAAQWLEYGVTRSVTKRSVMTLAYGSKEYGFADQ 649
Query: 807 IKRRLEEKGHITDDRQLF---AAAC-YAAKVTLTALGEIFEAARSIMGWLGDCAKVIASE 862
+ +F + AC + AK+ A+ + AA M WL AK+++SE
Sbjct: 650 VFEDTVMPAIDNGKGTMFTEPSQACRFMAKLIWDAVSKTVVAAVEAMQWLQSAAKLVSSE 709
Query: 863 NQ------------PVRWTTPLGLPVVQPYCKNERHLI------RTSLQVLALQREGNLV 904
+ PV WTTP G PV YCK E+ +I LQ+ R+ +
Sbjct: 710 VKDKKSGEILKHAMPVHWTTPNGFPVWSEYCKQEQKVIDCVILGSMRLQLKLNMRDKKEI 769
Query: 905 KIRKQRTAFPPNFVHSLDGSHMMMTAVAC-RDAGLH 939
KQ + PNFVHS+D SH+ MT C + G+H
Sbjct: 770 DTAKQASGIAPNFVHSMDASHLQMTVNKCFKVYGIH 805
>gi|323512132|gb|ADX87591.1| T3/T7-like RNA polymerase [Vibrio phage ICP3_2008_A]
Length = 883
Score = 271 bits (692), Expect = 2e-69, Method: Compositional matrix adjust.
Identities = 226/758 (29%), Positives = 357/758 (47%), Gaps = 117/758 (15%)
Query: 249 PHIE-----LLPADKVAVIVMHKMMGLVMAGHEDRCVQVVQAAVHIGMAIEQEIRIHSFL 303
PH+ ++ + A I++ + ++ ++ V V + A+ IG IE EIR
Sbjct: 98 PHVSKGYFAMIKPESAAFIIVKTTLNILA---KEESVPVQRVAMAIGGNIEDEIRFGRIR 154
Query: 304 -EKTKNYKRKKIIADTEEVLSKEKELLRKRVNSLIKSKRVMEA------QKLLKNEETKP 356
E+ K++K + K L KR N I K MEA K N +
Sbjct: 155 DEEIKHFKERV------------KPNLDKR-NGFIYKKAYMEAVEAGMQDKGELNSTHEA 201
Query: 357 WGRDTQAKLGSRLVELLIE-TAYVQHPVNPADYSPPDVRPAFRHRFKTILKHPGQKTTKR 415
W +D + +G R +E+LIE T VQ +FK I K
Sbjct: 202 WEKDVKFHVGIRAIEMLIEATGMVQ----------------LERKFKGI-------PDKD 238
Query: 416 YGVVECDPLVLEGLDRSAKHM--LIP-YVPMLVPPKKWKGYNKGGYLF---LPSYVMRTH 469
+ + P +E L A + + P Y PM+V PK+W G GGY P ++R
Sbjct: 239 HEALHLAPEYVEKLTNRAHALAGISPMYQPMIVKPKRWTGVQGGGYWAKGRRPLNLIRV- 297
Query: 470 GSRKQQEALKSVTGNCMKKVFEALDTLGSTKWRVNKQVLSVLESIWVSGGN--IAGLVDR 527
GS++ + + V M +V++A++T+ T WR+NK VL+V+ ++ V+ N + +
Sbjct: 298 GSKRALDRYRQVD---MPEVYDAINTIQETAWRINKDVLAVVNNV-VTWANCPVEDVPSI 353
Query: 528 NDVLIPEKPLSEDMTE--VQKWKWSVRKAKKINQERHSQRCDTELKLSVARRMKDEEGFY 585
+ + +PEKP D E ++KWK + + + R S+R E LS A + Y
Sbjct: 354 DKLALPEKPEDIDNNEESLKKWKKAAAAIYRKEKARQSRRISLEFALSQANKFSKYNEIY 413
Query: 586 YPHNLDFRGRAYPMHPHLNHLSSDVCRGVLEFAEGRPLGKSGLRWLKIHLANLFSGGVEK 645
+P+N+D+RGR Y + P N +D+ +G+L FA+ P+G G WL +H AN GV+K
Sbjct: 414 FPYNMDWRGRVYAI-PMFNPQGNDMVKGLLTFAKKVPVGIDGGYWLAVHGAN--CAGVDK 470
Query: 646 LSHDGRLAFVENHLYEIFDSAENPINGSRWWLTAEDPFQCLAACINLSEALKSSSPHSVI 705
+S + R+ +V ++ I SAE P++ + WW + PF LA C + +K+ S
Sbjct: 471 VSLEDRVKWVNDNEANIIASAEAPLDFT-WWAEQDSPFCFLAFCFEWAAYVKAGKKPSFE 529
Query: 706 SHLPIHQDGSCNGLQHYAALGRNTLEAAAVNLVAGEKPADVYSEIAVRVHEIMKR---DS 762
S LP+ DG+C+GLQH++A+ R+ + AAVNL+ +KP D+Y +AV+V+E+++
Sbjct: 530 SSLPLAFDGTCSGLQHFSAMLRDEIGGAAVNLLPADKPQDIYGIVAVKVNEVLRDLVISG 589
Query: 763 NKDPSK----------------HPQALLAKILIDQVDRKLVKQTVMTSVYGVTFVGAREQ 806
+D + + L A+ L V R + K++VMT YG G +Q
Sbjct: 590 TEDEMQTLEDKKTGEITERLVLGTRTLAAQWLEHGVTRSVTKRSVMTLAYGSKEYGFADQ 649
Query: 807 IKRRLEEKGHITDDRQLF---AAAC-YAAKVTLTALGEIFEAARSIMGWLGDCAKVIASE 862
+ +F + AC + AK+ A+ + AA M WL AK+++SE
Sbjct: 650 VFEDTVMPAIDNGKGAMFTEPSQACRFMAKLIWDAVSKTVVAAVEAMQWLQSAAKLVSSE 709
Query: 863 NQ------------PVRWTTPLGLPVVQPYCKNERHLIRTSLQVLALQREGNLVKIR--- 907
+ PV WTTP G PV YCK E+ R +L R + IR
Sbjct: 710 VKDKKSGEILKHAMPVHWTTPNGFPVWSEYCKQEQK--RIDCVILGTHRMALTINIRDKK 767
Query: 908 -----KQRTAFPPNFVHSLDGSHMMMTAVAC-RDAGLH 939
KQ + PNFVHS+D SH+ MT C + G+H
Sbjct: 768 EIDAAKQTSGIAPNFVHSMDASHLQMTVNKCFKVYGIH 805
>gi|68299728|ref|YP_249577.1| RNA polymerase [Vibriophage VP4]
gi|66473267|gb|AAY46276.1| RNA polymerase [Vibriophage VP4]
Length = 883
Score = 271 bits (692), Expect = 2e-69, Method: Compositional matrix adjust.
Identities = 225/756 (29%), Positives = 358/756 (47%), Gaps = 113/756 (14%)
Query: 249 PHIE-----LLPADKVAVIVMHKMMGLVMAGHEDRCVQVVQAAVHIGMAIEQEIRIHSFL 303
PH+ ++ + A I++ + ++ ++ V V + A+ IG IE EIR
Sbjct: 98 PHVSKGYFAMIKPESAAFIIVKTTLNILA---KEESVPVQRVAMAIGGNIEDEIRFGRIR 154
Query: 304 -EKTKNYKRKKIIADTEEVLSKEKELLRKRVNSLIKSKRVMEA------QKLLKNEETKP 356
E+ K++K + K L KR N I K MEA K N +
Sbjct: 155 DEEIKHFKERV------------KPNLDKR-NGFIYKKAYMEAVEAGMQDKGELNSTHEA 201
Query: 357 WGRDTQAKLGSRLVELLIE-TAYVQHPVNPADYSPPDVRPAFRHRFKTILKHPGQKTTKR 415
W +D + +G R +E+LIE T VQ +FK I K
Sbjct: 202 WEKDVKFHVGIRAIEMLIEATGMVQ----------------LERKFKGI-------PDKD 238
Query: 416 YGVVECDPLVLEGLDRSAKHM--LIP-YVPMLVPPKKWKGYNKGGYLF---LPSYVMRTH 469
+ + P +E L A + + P Y PM+V PK+W G GGY P ++R
Sbjct: 239 HEALHLAPEYVEKLTNRAHALAGISPMYQPMIVKPKRWTGVQGGGYWAKGRRPLNLIRV- 297
Query: 470 GSRKQQEALKSVTGNCMKKVFEALDTLGSTKWRVNKQVLSVLESIWVSGGN--IAGLVDR 527
GS++ + + V M +V++A++T+ T WR+NK VL+V+ ++ V+ N + +
Sbjct: 298 GSKRALDRYRQVD---MPEVYDAINTIQETAWRINKDVLAVVNNV-VTWTNCPVEDVPSI 353
Query: 528 NDVLIPEKPLSEDMTE--VQKWKWSVRKAKKINQERHSQRCDTELKLSVARRMKDEEGFY 585
+ + +PEKP D E ++KWK + + + R S+R E LS A + Y
Sbjct: 354 DKLALPEKPEDIDNNEESLKKWKKAAAAIYRKEKARQSRRISLEFALSQANKFSKYNEIY 413
Query: 586 YPHNLDFRGRAYPMHPHLNHLSSDVCRGVLEFAEGRPLGKSGLRWLKIHLANLFSGGVEK 645
+P+N+D+RGR Y + P N +D+ +G+L FA+ P+G G WL +H AN GV+K
Sbjct: 414 FPYNMDWRGRVYAI-PMFNPQGNDMVKGLLTFAKKVPVGIDGGYWLAVHGAN--CAGVDK 470
Query: 646 LSHDGRLAFVENHLYEIFDSAENPINGSRWWLTAEDPFQCLAACINLSEALKSSSPHSVI 705
+S + R+ +V ++ I SAE P++ + WW + PF LA C + +K+ S
Sbjct: 471 VSLEDRVKWVNDNEANIIASAEAPLDFT-WWAEQDSPFCFLAFCFEWAAYVKAGKKPSFE 529
Query: 706 SHLPIHQDGSCNGLQHYAALGRNTLEAAAVNLVAGEKPADVYSEIAVRVHEIMKR---DS 762
S LP+ DG+C+GLQH++A+ R+ + AAVNL+ +KP D+Y +AV+V+E+++
Sbjct: 530 SSLPLAFDGTCSGLQHFSAMLRDEIGGAAVNLLPADKPQDIYGIVAVKVNEVLRDLVISG 589
Query: 763 NKDPSK----------------HPQALLAKILIDQVDRKLVKQTVMTSVYGVTFVGAREQ 806
+D + + L A+ L V R + K++VMT YG G +Q
Sbjct: 590 TEDEMQTLEDKKTGEITERLVLGTRTLAAQWLEYGVTRSVTKRSVMTLAYGSKEYGFADQ 649
Query: 807 IKRRLEEKGHITDDRQLF---AAAC-YAAKVTLTALGEIFEAARSIMGWLGDCAKVIASE 862
+ +F + AC + AK+ A+ + AA M WL AK+++SE
Sbjct: 650 VFEDTVMPAIDNGKGTMFTEPSQACRFMAKLIWDAVSKTVVAAVEAMQWLQSAAKLVSSE 709
Query: 863 NQ------------PVRWTTPLGLPVVQPYCKNERHLI------RTSLQVLALQREGNLV 904
+ PV WTTP G PV YCK E+ +I LQ+ R+ +
Sbjct: 710 VKDKKSGEILKHAMPVHWTTPNGFPVWSEYCKQEQKVIDCVILGSMRLQLKLNMRDKKEI 769
Query: 905 KIRKQRTAFPPNFVHSLDGSHMMMTAVAC-RDAGLH 939
KQ + PNFVHS+D SH+ MT C + G+H
Sbjct: 770 DTAKQASGIAPNFVHSMDASHLQMTVNKCFKVYGIH 805
>gi|281416168|ref|YP_003347903.1| RNA polymerase [Vibrio phage N4]
gi|237701475|gb|ACR16468.1| RNA polymerase [Vibrio phage N4]
Length = 883
Score = 270 bits (691), Expect = 2e-69, Method: Compositional matrix adjust.
Identities = 226/758 (29%), Positives = 357/758 (47%), Gaps = 117/758 (15%)
Query: 249 PHIE-----LLPADKVAVIVMHKMMGLVMAGHEDRCVQVVQAAVHIGMAIEQEIRIHSFL 303
PH+ ++ + A I++ + ++ ++ V V + A+ IG IE EIR
Sbjct: 98 PHVSKGYFAMIKPESAAFIIVKTTLNILA---KEESVPVQRVAMAIGGNIEDEIRFGRIR 154
Query: 304 -EKTKNYKRKKIIADTEEVLSKEKELLRKRVNSLIKSKRVMEA------QKLLKNEETKP 356
E+ K++K + K L KR N I K MEA K N +
Sbjct: 155 DEEIKHFKERV------------KPNLDKR-NGFIYKKAYMEAVEAGMQDKGELNSTHEA 201
Query: 357 WGRDTQAKLGSRLVELLIE-TAYVQHPVNPADYSPPDVRPAFRHRFKTILKHPGQKTTKR 415
W +D + +G R +E+LIE T VQ +FK I K
Sbjct: 202 WEKDVKFHVGIRAIEMLIEATGMVQ----------------LERKFKGI-------PDKD 238
Query: 416 YGVVECDPLVLEGLDRSAKHM--LIP-YVPMLVPPKKWKGYNKGGYLF---LPSYVMRTH 469
+ + P +E L A + + P Y PM+V PK+W G GGY P ++R
Sbjct: 239 HEALHLAPEYVEKLTNRAHALAGISPMYQPMIVKPKRWTGVQGGGYWAKGRRPLNLIRV- 297
Query: 470 GSRKQQEALKSVTGNCMKKVFEALDTLGSTKWRVNKQVLSVLESIWVSGGN--IAGLVDR 527
GS++ + + V M +V++A++T+ T WR+NK VL+V+ ++ V+ N + +
Sbjct: 298 GSKRALDRYRQVD---MPEVYDAINTIQETAWRINKDVLAVVNNV-VTWANCPVEDVPSI 353
Query: 528 NDVLIPEKPLSEDMTE--VQKWKWSVRKAKKINQERHSQRCDTELKLSVARRMKDEEGFY 585
+ + +PEKP D E ++KWK + + + R S+R E LS A + Y
Sbjct: 354 DKLALPEKPEDIDSNEESLKKWKKAAAAIYRKEKARQSRRISLEFALSQANKFSKYNEIY 413
Query: 586 YPHNLDFRGRAYPMHPHLNHLSSDVCRGVLEFAEGRPLGKSGLRWLKIHLANLFSGGVEK 645
+P+N+D+RGR Y + P N +D+ +G+L FA+ P+G G WL +H AN GV+K
Sbjct: 414 FPYNMDWRGRVYAI-PMFNPQGNDMVKGLLTFAKKVPVGIDGGYWLAVHGAN--CAGVDK 470
Query: 646 LSHDGRLAFVENHLYEIFDSAENPINGSRWWLTAEDPFQCLAACINLSEALKSSSPHSVI 705
+S + R+ +V ++ I SAE P++ + WW + PF LA C + +K+ S
Sbjct: 471 VSLEDRVKWVNDNEANILASAEAPLDFT-WWAEQDSPFCFLAFCFEWAAYVKAGKKPSFE 529
Query: 706 SHLPIHQDGSCNGLQHYAALGRNTLEAAAVNLVAGEKPADVYSEIAVRVHEIMKR---DS 762
S LP+ DG+C+GLQH++A+ R+ + AAVNL+ +KP D+Y +AV+V+E+++
Sbjct: 530 SSLPLAFDGTCSGLQHFSAMLRDEIGGAAVNLLPADKPQDIYGIVAVKVNEVLRDLVISG 589
Query: 763 NKDPSK----------------HPQALLAKILIDQVDRKLVKQTVMTSVYGVTFVGAREQ 806
+D + + L A+ L V R + K++VMT YG G +Q
Sbjct: 590 TEDEMQTLEDKKTGEITERLVLGTRTLAAQWLEYGVTRSVTKRSVMTLAYGSKEYGFADQ 649
Query: 807 IKRRLEEKGHITDDRQLF---AAAC-YAAKVTLTALGEIFEAARSIMGWLGDCAKVIASE 862
+ +F + AC + AK+ A+ + AA M WL AK+++SE
Sbjct: 650 VFEDTVMPAIDNGKGAMFTEPSQACRFMAKLIWDAVSKTVVAAVEAMQWLQSAAKLVSSE 709
Query: 863 NQ------------PVRWTTPLGLPVVQPYCKNERHLIRTSLQVLALQREGNLVKIR--- 907
+ PV WTTP G PV YCK E+ R +L R + IR
Sbjct: 710 VKDKKSGEILKHAMPVHWTTPNGFPVWSEYCKQEQK--RIDCVILGTHRMALTINIRDKK 767
Query: 908 -----KQRTAFPPNFVHSLDGSHMMMTAVAC-RDAGLH 939
KQ + PNFVHS+D SH+ MT C + G+H
Sbjct: 768 EIDAAKQTSGIAPNFVHSMDASHLQMTVNKCFKVYGIH 805
>gi|323512181|gb|ADX87639.1| T3/T7-like RNA polymerase [Vibrio phage ICP3_2007_A]
Length = 883
Score = 270 bits (691), Expect = 2e-69, Method: Compositional matrix adjust.
Identities = 226/758 (29%), Positives = 357/758 (47%), Gaps = 117/758 (15%)
Query: 249 PHIE-----LLPADKVAVIVMHKMMGLVMAGHEDRCVQVVQAAVHIGMAIEQEIRIHSFL 303
PH+ ++ + A I++ + ++ ++ V V + A+ IG IE EIR
Sbjct: 98 PHVSKGYFAMIKPESAAFIIVKTTLNILA---KEESVPVQRVAMAIGGNIEDEIRFGRIR 154
Query: 304 -EKTKNYKRKKIIADTEEVLSKEKELLRKRVNSLIKSKRVMEA------QKLLKNEETKP 356
E+ K++K + K L KR N I K MEA K N +
Sbjct: 155 DEEIKHFKERV------------KPNLDKR-NGFIYKKAYMEAVEAGMQDKGELNSTHEA 201
Query: 357 WGRDTQAKLGSRLVELLIE-TAYVQHPVNPADYSPPDVRPAFRHRFKTILKHPGQKTTKR 415
W +D + +G R +E+LIE T VQ +FK I K
Sbjct: 202 WEKDVKFHVGIRAIEMLIEATGMVQ----------------LERKFKGI-------PDKD 238
Query: 416 YGVVECDPLVLEGLDRSAKHM--LIP-YVPMLVPPKKWKGYNKGGYLF---LPSYVMRTH 469
+ + P +E L A + + P Y PM+V PK+W G GGY P ++R
Sbjct: 239 HEALHLAPEYVEKLTNRAHALAGISPMYQPMIVKPKRWTGVQGGGYWAKGRRPLNLIRV- 297
Query: 470 GSRKQQEALKSVTGNCMKKVFEALDTLGSTKWRVNKQVLSVLESIWVSGGN--IAGLVDR 527
GS++ + + V M +V++A++T+ T WR+NK VL+V+ ++ V+ N + +
Sbjct: 298 GSKRALDRYRQVD---MPEVYDAINTIQETAWRINKDVLAVVNNV-VTWANCPVEDVPSI 353
Query: 528 NDVLIPEKPLSEDMTE--VQKWKWSVRKAKKINQERHSQRCDTELKLSVARRMKDEEGFY 585
+ + +PEKP D E ++KWK + + + R S+R E LS A + Y
Sbjct: 354 DKLALPEKPEDIDNNEESLKKWKKAAAAIYRKEKARQSRRISLEFALSQANKFSKYNEIY 413
Query: 586 YPHNLDFRGRAYPMHPHLNHLSSDVCRGVLEFAEGRPLGKSGLRWLKIHLANLFSGGVEK 645
+P+N+D+RGR Y + P N +D+ +G+L FA+ P+G G WL +H AN GV+K
Sbjct: 414 FPYNMDWRGRVYAI-PMFNPQGNDMVKGLLTFAKKVPVGIDGGYWLAVHGAN--CAGVDK 470
Query: 646 LSHDGRLAFVENHLYEIFDSAENPINGSRWWLTAEDPFQCLAACINLSEALKSSSPHSVI 705
+S + R+ +V ++ I SAE P++ + WW + PF LA C + +K+ S
Sbjct: 471 VSLEDRVKWVNDNEANIIASAEAPLDFT-WWAEQDSPFCFLAFCFEWAAYVKAGKKPSFE 529
Query: 706 SHLPIHQDGSCNGLQHYAALGRNTLEAAAVNLVAGEKPADVYSEIAVRVHEIMKR---DS 762
S LP+ DG+C+GLQH++A+ R+ + AAVNL+ +KP D+Y +AV+V+E+++
Sbjct: 530 SSLPLAFDGTCSGLQHFSAMLRDEIGGAAVNLLPADKPQDIYDIVAVKVNEVLRDLVISG 589
Query: 763 NKDPSK----------------HPQALLAKILIDQVDRKLVKQTVMTSVYGVTFVGAREQ 806
+D + + L A+ L V R + K++VMT YG G +Q
Sbjct: 590 TEDEMQTLEDKKTGEITERLVLGTRTLAAQWLEYGVTRSVTKRSVMTLAYGSKEYGFADQ 649
Query: 807 IKRRLEEKGHITDDRQLF---AAAC-YAAKVTLTALGEIFEAARSIMGWLGDCAKVIASE 862
+ +F + AC + AK+ A+ + AA M WL AK+++SE
Sbjct: 650 VFEDTVMPAIDNGKGAMFTEPSQACRFMAKLIWDAVSKTVVAAVEAMQWLQSAAKLVSSE 709
Query: 863 NQ------------PVRWTTPLGLPVVQPYCKNERHLIRTSLQVLALQREGNLVKIR--- 907
+ PV WTTP G PV YCK E+ R +L R + IR
Sbjct: 710 VKDKKSGEILKHAMPVHWTTPNGFPVWSEYCKQEQK--RIDCVILGTHRMALTINIRDKK 767
Query: 908 -----KQRTAFPPNFVHSLDGSHMMMTAVAC-RDAGLH 939
KQ + PNFVHS+D SH+ MT C + G+H
Sbjct: 768 EIDAAKQTSGIAPNFVHSMDASHLQMTVNKCFKVYGIH 805
>gi|321454096|gb|EFX65282.1| hypothetical protein DAPPUDRAFT_264936 [Daphnia pulex]
Length = 399
Score = 270 bits (690), Expect = 3e-69, Method: Compositional matrix adjust.
Identities = 142/353 (40%), Positives = 208/353 (58%), Gaps = 60/353 (16%)
Query: 593 RGRAYPMHPHLNHLSSDVCRGVLEFAEGRPLGKSGLRWLKIHLANLFSGGVEKLSHDGRL 652
RGR YP PHL HLS D+ R +L FA+G+PLG G WLK+H+ NL +G ++ R
Sbjct: 52 RGRVYPCSPHLTHLSHDMARSLLFFAQGKPLGADGFNWLKLHVINL-TGTKKREPISERH 110
Query: 653 AFVENHLYEIFDSAENPINGSRWWLTAEDPFQCLAACINLSEALKS-SSPHSVISHLPIH 711
A+ E + EI DSA+NP+ G +WW+ +++P+Q LAAC+ ++ AL+ P + HLPIH
Sbjct: 111 AYAEKIMPEILDSADNPLTGRQWWVNSDEPWQTLAACMEVANALRCPEGPEAYGCHLPIH 170
Query: 712 QDGSCNGLQHYAALGRNTLEAAAVNLVAGEKPADVYSEIAVRVHEIMKRDSNKDPSKHPQ 771
QDGSCNGLQHYAALGR+T+ A +VNL ++P DVYS +A +++R+ +KD + + +
Sbjct: 171 QDGSCNGLQHYAALGRDTVGAESVNLTPTDRPQDVYSNVA----NLVERERSKDAANNVE 226
Query: 772 ALLAKILIDQVDRKLVKQTVMTSVYGVTFVGAREQIKRRLEEKGHITDDRQLFAAACYAA 831
+A++L ++RK++KQTV+T+VYGVT
Sbjct: 227 --IAQLLAGLINRKIIKQTVITTVYGVTR------------------------------- 253
Query: 832 KVTLTALGEIFEAARSIMGWLGDCAKVIAS-ENQPVRWTTPLGLPVVQPYCKNERHLIRT 890
F +A+ I W + AK+I++ + V W TP+GLPVVQ Y N I +
Sbjct: 254 ----------FTSAKDIQDWFTESAKLISTVAGESVEWITPIGLPVVQSYNNNPYEAINS 303
Query: 891 SLQVLALQREGNLVKIRKQRTAFPPNFVHSLDGSHMMMTAVACRDAGLHFAGL 943
++ +A+ KQR AFPPNF+HS D SHMM+TA+ C+ G+ FA +
Sbjct: 304 NIDRIAI----------KQRNAFPPNFIHSSDSSHMMLTALYCQRKGITFASI 346
>gi|325171278|ref|YP_004251249.1| RNA polymerase [Vibrio phage ICP3]
gi|323511984|gb|ADX87446.1| RNA polymerase [Vibrio phage ICP3]
Length = 883
Score = 270 bits (690), Expect = 3e-69, Method: Compositional matrix adjust.
Identities = 226/758 (29%), Positives = 357/758 (47%), Gaps = 117/758 (15%)
Query: 249 PHIE-----LLPADKVAVIVMHKMMGLVMAGHEDRCVQVVQAAVHIGMAIEQEIRIHSFL 303
PH+ ++ + A I++ + ++ ++ V V + A+ IG IE EIR
Sbjct: 98 PHVSKGYFAMIKPESAAFIIVKTTLNILA---KEESVPVQRVAMAIGGNIEDEIRFGRIR 154
Query: 304 -EKTKNYKRKKIIADTEEVLSKEKELLRKRVNSLIKSKRVMEA------QKLLKNEETKP 356
E+ K++K + K L KR N I K MEA K N +
Sbjct: 155 DEEIKHFKERV------------KPNLDKR-NGFIYKKAYMEAVEAGMQDKGELNSTHEA 201
Query: 357 WGRDTQAKLGSRLVELLIE-TAYVQHPVNPADYSPPDVRPAFRHRFKTILKHPGQKTTKR 415
W +D + +G R +E+LIE T VQ +FK I K
Sbjct: 202 WEKDVKFHVGIRAIEMLIEATGMVQ----------------LERKFKGI-------PDKD 238
Query: 416 YGVVECDPLVLEGLDRSAKHM--LIP-YVPMLVPPKKWKGYNKGGYLF---LPSYVMRTH 469
+ + P +E L A + + P Y PM+V PK+W G GGY P ++R
Sbjct: 239 HEALHLAPEYVEKLTNRAHALAGISPMYQPMIVKPKRWTGVQGGGYWAKGRRPLNLIRV- 297
Query: 470 GSRKQQEALKSVTGNCMKKVFEALDTLGSTKWRVNKQVLSVLESIWVSGGN--IAGLVDR 527
GS++ + + V M +V++A++T+ T WR+NK VL+V+ ++ V+ N + +
Sbjct: 298 GSKRALDRYRQVD---MPEVYDAINTIQETAWRINKDVLAVVNNV-VTWANCPVEDVPSI 353
Query: 528 NDVLIPEKPLSEDMTE--VQKWKWSVRKAKKINQERHSQRCDTELKLSVARRMKDEEGFY 585
+ + +PEKP D E ++KWK + + + R S+R E LS A + Y
Sbjct: 354 DKLALPEKPEDIDNNEESLKKWKKAAAAIYRKEKARQSRRISLEFALSQANKFSKYNEIY 413
Query: 586 YPHNLDFRGRAYPMHPHLNHLSSDVCRGVLEFAEGRPLGKSGLRWLKIHLANLFSGGVEK 645
+P+N+D+RGR Y + P N +D+ +G+L FA+ P+G G WL +H AN GV+K
Sbjct: 414 FPYNMDWRGRVYAI-PMFNPQGNDMVKGLLTFAKKVPVGIDGGYWLAVHGAN--CAGVDK 470
Query: 646 LSHDGRLAFVENHLYEIFDSAENPINGSRWWLTAEDPFQCLAACINLSEALKSSSPHSVI 705
+S + R+ +V ++ I SAE P++ + WW + PF LA C + +K+ S
Sbjct: 471 VSLEDRVKWVNDNEANIIASAEAPLDFT-WWAEQDSPFCFLAFCFEWAAYVKAGKKPSFE 529
Query: 706 SHLPIHQDGSCNGLQHYAALGRNTLEAAAVNLVAGEKPADVYSEIAVRVHEIMKR---DS 762
S LP+ DG+C+GLQH++A+ R+ + AAVNL+ +KP D+Y +AV+V+E+++
Sbjct: 530 SSLPLAFDGTCSGLQHFSAMLRDEIGGAAVNLLPADKPQDIYGIVAVKVNEVLRDLVISG 589
Query: 763 NKDPSK----------------HPQALLAKILIDQVDRKLVKQTVMTSVYGVTFVGAREQ 806
+D + + L A+ L V R + K++VMT YG G +Q
Sbjct: 590 TEDEMQTLEDKKTGEITERLVLGTRTLAAQWLEYGVTRSVTKRSVMTLAYGSKEYGFADQ 649
Query: 807 IKRRLEEKGHITDDRQLF---AAAC-YAAKVTLTALGEIFEAARSIMGWLGDCAKVIASE 862
+ +F + AC + AK+ A+ + AA M WL AK+++SE
Sbjct: 650 VFEDTVMPAIDNGKGAMFTEPSQACRFMAKLIWDAVSKTVVAAVEAMQWLQSAAKLVSSE 709
Query: 863 NQ------------PVRWTTPLGLPVVQPYCKNERHLIRTSLQVLALQREGNLVKIR--- 907
+ PV WTTP G PV YCK E+ R +L R + IR
Sbjct: 710 VKDKKSGEILKHAMPVHWTTPNGFPVWSEYCKQEQK--RIDCVILGTHRMALTINIRDKK 767
Query: 908 -----KQRTAFPPNFVHSLDGSHMMMTAVAC-RDAGLH 939
KQ + PNFVHS+D SH+ MT C + G+H
Sbjct: 768 EIDAAKQTSGIAPNFVHSMDASHLQMTVNKCFKVYGIH 805
>gi|189427200|ref|YP_001949750.1| gp1 [Salmonella phage phiSG-JL2]
gi|189085853|gb|ACD75668.1| gp1 [Salmonella phage phiSG-JL2]
Length = 884
Score = 267 bits (682), Expect = 2e-68, Method: Compositional matrix adjust.
Identities = 227/777 (29%), Positives = 365/777 (46%), Gaps = 108/777 (13%)
Query: 209 LAPNLPHIKGLFLGWFGPLSEAIEREQKMQRTKKQKAAYAPHIELLPADKVAVIVMHKMM 268
LA LP + + W E+ + ++ AYAP ++LL + A I +
Sbjct: 75 LATLLPKLTARIVEWL---------EEYASKKGRKPVAYAP-LQLLKPEASAFITLK--- 121
Query: 269 GLVMAGHEDRCVQVVQAAVH-IGMAIEQEIRIHSFLEKTKNYKRKKIIADTEEVLSK-EK 326
+++A + +QAA +G AIE E R + ++ + K EE L+K
Sbjct: 122 -VILASLTSTNMTTIQAAAGMLGKAIEDEAR----FGRIRDLEAKHFKKHVEEQLNKRHG 176
Query: 327 ELLRKRVNSLIKSKRVMEAQKLLKNEETKPWGRDTQAKLGSRLVELLIE-TAYVQHPVNP 385
++ +K ++++ M + LL E W ++T +G RL+E+LIE T V+ +
Sbjct: 177 QVYKKAFMQVVEAD--MIGRGLLGGEAWSSWDKETTMHVGIRLIEMLIESTGLVELQRHN 234
Query: 386 ADYSPPDVRPAFRHRFKTILKHPGQKTTKRYGVVECDPLVLEGLDRSAKHMLIPYVPMLV 445
A + D H + + KR G L G+ + P +V
Sbjct: 235 AGNAGSD------HEALQLAQEYVDVLAKRAGA-------LAGISPM-------FQPCVV 274
Query: 446 PPKKWKGYNKGGYLF---LPSYVMRTHGSRKQQEALKSVTGNCMKKVFEALDTLGSTKWR 502
PPK W GGY P ++RTH + L M +V++A++ +T W+
Sbjct: 275 PPKPWVAITGGGYWANGRRPLALVRTHSKK----GLMRYEDVYMPEVYKAVNIAQNTAWK 330
Query: 503 VNKQVLSVLESIWVSGGN--IAGLVDRNDVLIPEKPLSEDMTE--VQKWKWSVRKAKKIN 558
+NK+VL+V+ I V+ N +A + +P KP D E +++WK + +++
Sbjct: 331 INKKVLAVVNEI-VNWKNCPVADIPSLERQELPPKPDDIDTNEAALKEWKKAAAGVYRLD 389
Query: 559 QERHSQRCDTELKLSVARRMKDEEGFYYPHNLDFRGRAYPMHPHLNHLSSDVCRGVLEFA 618
+ R S+R E L A + ++ ++P+N+D+RGR Y + P N +D+ +G+L A
Sbjct: 390 KARVSRRISLEFMLEQANKFASKKAIWFPYNMDWRGRVYAV-PMFNPQGNDMTKGLLTLA 448
Query: 619 EGRPLGKSGLRWLKIHLANLFSGGVEKLSHDGRLAFVENHLYEIFDSAENPINGSRWWLT 678
+G+P+G+ G WLKIH AN GV+K+ R+AF+E H+ +I A++PIN + WW
Sbjct: 449 KGKPIGEEGFYWLKIHGAN--CAGVDKVPFPERIAFIEKHVDDILACAKDPINNT-WWAE 505
Query: 679 AEDPFQCLAACINLSEALKSSSPHSVISH---LPIHQDGSCNGLQHYAALGRNTLEAAAV 735
+ PF LA C + H +S+ LP+ DGSC+G+QH++A+ R+ + AV
Sbjct: 506 QDSPFCFLAFCFEYA-----GVAHHGLSYNCSLPLAFDGSCSGIQHFSAMLRDEVGGRAV 560
Query: 736 NLVAGEKPADVYSEIAVRVHEIMKRD------------SNKDPSKHPQ-------ALLAK 776
NL+ E D+Y +A +V+EI+K+D ++KD + + L +
Sbjct: 561 NLLPSETVQDIYGIVAQKVNEILKQDAINGTPNEMITVTDKDTGEISEKLKLGTSTLAQQ 620
Query: 777 ILIDQVDRKLVKQTVMTSVYGVTFVGAREQIKRRLEEKGHITDDRQLFA----AACYAAK 832
L V R + K++VMT YG G R+Q+ + + +F AA Y AK
Sbjct: 621 WLAYGVTRSVTKRSVMTLAYGSKEFGFRQQVLDDTIQPAIDSGKGLMFTQPNQAAGYMAK 680
Query: 833 VTLTALGEIFEAARSIMGWLGDCAKVIASENQ------------PVRWTTPLGLPVVQPY 880
+ A+ AA M WL AK++A+E + V WTTP G PV Q Y
Sbjct: 681 LIWDAVSVTVVAAVEAMNWLKSAAKLLAAEVKDKKTKEILRHRCAVHWTTPDGFPVWQEY 740
Query: 881 CKN-ERHLIRTSLQVLALQREGNLVK-----IRKQRTAFPPNFVHSLDGSHMMMTAV 931
K ++ L L LQ N +K KQ + PNFVHS DGSH+ MT V
Sbjct: 741 RKPLQKRLDMIFLGQFRLQPTINTLKDSGIDAHKQESGIAPNFVHSQDGSHLRMTVV 797
>gi|441463239|gb|AGC35521.1| putative DNA-dependent RNA polymerase protein [Rhizobium phage
RHEph01]
Length = 858
Score = 266 bits (681), Expect = 3e-68, Method: Compositional matrix adjust.
Identities = 213/755 (28%), Positives = 353/755 (46%), Gaps = 100/755 (13%)
Query: 242 KQKAAYAPHIELLPADKVAVIVMHKMMGLVMAGHEDRCVQVVQAAVHIGMAIEQEIRIHS 301
K AA H + DK+ V + + V+ R + + ++ IG +E E
Sbjct: 73 KSGAAGRRHTAVAFIDKLDVDTVANITARVILDEVTRKSNLTKTSLAIGSMLENEFNSRK 132
Query: 302 FLEKTKNYKRKKIIADTEEVLSKEKELLRKRVNSLIKSKRVMEAQKLLKNEETKPWGRDT 361
F E+ +K + +E L R++ + L+ R++ E + W
Sbjct: 133 FEEEMPKAHKKFLKKAQKESLD------RRKWSHLLYPARLLGV-------ELEEWSEKD 179
Query: 362 QAKLGSRLVELLIE-TAYVQHPVNPADYSPPDVRPAFRHRFKTILKHPGQKTTKRYGVVE 420
+ +G +LV++ I+ T ++ V V+ A RF T+ + T R+
Sbjct: 180 RILVGLKLVDIFIQSTGLIEREV---------VQSA---RFGTLELLTANEATMRW---- 223
Query: 421 CDPLVLEGLDRSAKHMLIPYVPMLVPPKKWKGYNKGGYL--FLPSYVMRTHGSRKQQEAL 478
+E + +H+ Y+P +VPPK W GGY F +++TH Q+ L
Sbjct: 224 -----METENSRLEHLFPIYMPTIVPPKPWTSPFDGGYYTAFRRLKLVKTH----NQQYL 274
Query: 479 KSVTGNCMKKVFEALDTLGSTKWRVNKQVLSVLESIWVSGGNIAGLVDRNDVLIPEKP-- 536
+ + + +V+EA++ L T W +N QVL V+ +++ +G +AGL + + +P +P
Sbjct: 275 EELANRDLSEVYEAINALQDTAWAINTQVLDVVRTLYETGAGVAGLPQADKLRMPARPHW 334
Query: 537 --------LSEDMTEVQ-----KWKWSVRKAKKINQERHSQRCDTELKLSVARRMKDEEG 583
EDMTE Q WK + N +R L VA + KDEE
Sbjct: 335 LPEGKEKMAVEDMTEEQVEEFKAWKAETHRTHVENAAISGRRASFLRTLGVAEKFKDEEA 394
Query: 584 FYYPHNLDFRGRAYPMHPHLNHLSSDVCRGVLEFAEGRPL-GKSGLRWLKIHLANLFSGG 642
F+YPH LD+RGRAYP+ +L +D+ RG+L F+ P+ + WL IH A + G
Sbjct: 395 FFYPHTLDWRGRAYPLPLYLTPQGNDLQRGLLTFSNAVPIHDQEAAEWLAIHGAGCW--G 452
Query: 643 VEKLSHDGRLAFVENHLYEIFDSAENPINGSRWWLTA---EDPFQCLAACINLSEALKSS 699
+K+ + R+ +V + +I SAENP + +R+W+ A E +Q LA C + LK
Sbjct: 453 YDKVDMEERVQWVLRNEEQIIASAENPYD-NRFWMDADKGEKKWQFLAFCFEWA-GLKRE 510
Query: 700 SPHSVISHLPIHQDGSCNGLQHYAALGRNTLEAAAVNLVAGEKPADVYSEIAVRVHEIMK 759
+ +S LPI DG+CNGLQ+++A+ + + AAVNL+ ++P D+Y ++ V E +
Sbjct: 511 G-YGYMSCLPIQMDGTCNGLQNFSAMLLDEVGGAAVNLIPADEPQDIYQKVCDIVCEQLA 569
Query: 760 RDSNK----------DPSKHPQ------ALLAKILIDQVDRKLVKQTVMTSVYGVTFVGA 803
RD N D + + A +A + ++ RK+ K+ VMT YG G
Sbjct: 570 RDLNSSDMVMIKGKTDSGEEYEKVVCTVAEMASGWLPKMGRKVTKRPVMTLAYGARRFGF 629
Query: 804 REQIK-------RRLEEKGH----ITDDRQL----FAAACYAAKVTLTALGEIFEAARSI 848
Q+ R E +G+ DD + + AA Y + ++GE+ AR
Sbjct: 630 VSQVDEDTIKEWRTKEPEGYPFVSQGDDGKAIDFGYKAAQYMGGLIWDSVGEVVVKAREA 689
Query: 849 MGWLGDCAKVIASENQPVRWTTPLGLPVVQPYCKNERHLIRTSL--QVLALQREGNLVKI 906
M WL ++V + E P+ W+TP+G V Q Y + T+ Q L ++ + + KI
Sbjct: 690 MDWLQAASQVASKEGLPINWSTPVGFLVQQAYRVPNMKRVDTTFNSQRLQIRYQHGVGKI 749
Query: 907 --RKQRTAFPPNFVHSLDGSHMMMTAVACRDAGLH 939
R+Q + PN+VHSLD SH+M T + G++
Sbjct: 750 DSRRQASGISPNWVHSLDASHLMKTIGRSKREGIN 784
>gi|323512084|gb|ADX87544.1| T3/T7-like RNA polymerase [Vibrio phage ICP3_2009_A]
Length = 883
Score = 266 bits (679), Expect = 5e-68, Method: Compositional matrix adjust.
Identities = 225/758 (29%), Positives = 356/758 (46%), Gaps = 117/758 (15%)
Query: 249 PHIE-----LLPADKVAVIVMHKMMGLVMAGHEDRCVQVVQAAVHIGMAIEQEIRIHSFL 303
PH+ ++ + A I++ + ++ ++ V V + A+ IG IE EIR
Sbjct: 98 PHVSKGYFAMIKPESAAFIIVKTTLNILA---KEESVPVQRVAMAIGGNIEDEIRFGRIR 154
Query: 304 -EKTKNYKRKKIIADTEEVLSKEKELLRKRVNSLIKSKRVMEA------QKLLKNEETKP 356
E+ K++K + K L KR N I K MEA K N +
Sbjct: 155 DEEIKHFKERV------------KPNLDKR-NGFIYKKAYMEAVEAGMQDKGELNSTHEA 201
Query: 357 WGRDTQAKLGSRLVELLIE-TAYVQHPVNPADYSPPDVRPAFRHRFKTILKHPGQKTTKR 415
W +D + +G R +E+LIE T VQ +FK I K
Sbjct: 202 WEKDVKFHVGIRAIEMLIEATGMVQ----------------LERKFKGI-------PDKD 238
Query: 416 YGVVECDPLVLEGLDRSAKHM--LIP-YVPMLVPPKKWKGYNKGGYLF---LPSYVMRTH 469
+ + P +E L A + + P Y PM+V PK+W G GGY P ++R
Sbjct: 239 HEALHLAPEYVEKLTNRAHALAGISPMYQPMIVKPKRWTGVQGGGYWAKGRRPLNLIRV- 297
Query: 470 GSRKQQEALKSVTGNCMKKVFEALDTLGSTKWRVNKQVLSVLESIWVSGGN--IAGLVDR 527
GS++ + + V M +V++A++T+ T WR+NK VL+V+ ++ V+ N + +
Sbjct: 298 GSKRALDRYRQVD---MPEVYDAINTIQETAWRINKDVLAVVNNV-VTWANCPVEDVPSI 353
Query: 528 NDVLIPEKPLSEDMTE--VQKWKWSVRKAKKINQERHSQRCDTELKLSVARRMKDEEGFY 585
+ + +PEKP D E ++KWK + + + R S+R E LS A + Y
Sbjct: 354 DKLALPEKPEDIDNNEESLKKWKKAAAAIYRKEKARQSRRISLEFALSQANKFSKYNEIY 413
Query: 586 YPHNLDFRGRAYPMHPHLNHLSSDVCRGVLEFAEGRPLGKSGLRWLKIHLANLFSGGVEK 645
+P+N+D+RGR Y + P N +D+ +G+L FA+ P+G G WL +H AN GV+K
Sbjct: 414 FPYNMDWRGRVYAI-PMFNPQGNDMVKGLLTFAKKVPVGIDGGYWLAVHGAN--CAGVDK 470
Query: 646 LSHDGRLAFVENHLYEIFDSAENPINGSRWWLTAEDPFQCLAACINLSEALKSSSPHSVI 705
+S + R+ +V ++ I SAE P++ + WW + PF LA C + +K+ S
Sbjct: 471 VSLEDRVKWVNDNEANIIASAEAPLDFT-WWAEQDSPFCFLAFCFEWAAYVKAGKKPSFE 529
Query: 706 SHLPIHQDGSCNGLQHYAALGRNTLEAAAVNLVAGEKPADVYSEIAVRVHEIMKR---DS 762
S LP+ DG+C+GLQH++A+ R+ + AAVNL+ +KP D+Y +AV+V+E+++
Sbjct: 530 SSLPLAFDGTCSGLQHFSAMLRDEIGGAAVNLLPADKPQDIYDIVAVKVNEVLRDLVISG 589
Query: 763 NKDPSK----------------HPQALLAKILIDQVDRKLVKQTVMTSVYGVTFVGAREQ 806
+D + + L A+ L V R + K++VMT YG G +Q
Sbjct: 590 TEDEMQTLEDKKTGEITERLVLGTRTLAAQWLEYGVTRSVTKRSVMTLAYGSKEYGFADQ 649
Query: 807 IKRRLEEKGHITDDRQLF---AAAC-YAAKVTLTALGEIFEAARSIMGWLGDCAKVIASE 862
+ +F + AC + AK+ A+ + AA M WL AK+++SE
Sbjct: 650 VFEDTVMPAIDNGKGAMFTEPSQACRFMAKLIWDAVSKTVVAAVEAMQWLQSAAKLVSSE 709
Query: 863 NQ------------PVRWTTPLGLPVVQPYCKNERHLIRTSLQVLALQREGNLVKIR--- 907
+ PV WTTP G PV Y K E+ R +L R + IR
Sbjct: 710 VKDKKSGEILKHAMPVHWTTPNGFPVWSEYYKQEQK--RIDCVILGTHRMALTINIRDKK 767
Query: 908 -----KQRTAFPPNFVHSLDGSHMMMTAVAC-RDAGLH 939
KQ + PNFVHS+D SH+ MT C + G+H
Sbjct: 768 EIDAAKQTSGIAPNFVHSMDASHLQMTVNKCFKVYGIH 805
>gi|17570792|ref|NP_523301.1| RNA polymerase [Enterobacteria phage T3]
gi|133452|sp|P07659.1|RPOL_BPT3 RecName: Full=DNA-directed RNA polymerase
gi|15562|emb|CAA26719.1| unnamed protein product [Enterobacteria phage T3]
gi|15683|emb|CAA35121.1| 1 [Enterobacteria phage T3]
gi|17384276|emb|CAC86264.1| RNA polymerase [Enterobacteria phage T3]
Length = 884
Score = 266 bits (679), Expect = 5e-68, Method: Compositional matrix adjust.
Identities = 227/777 (29%), Positives = 366/777 (47%), Gaps = 108/777 (13%)
Query: 209 LAPNLPHIKGLFLGWFGPLSEAIEREQKMQRTKKQKAAYAPHIELLPADKVAVIVMHKMM 268
LA LP + + W E+ + ++ +AYAP ++LL + A I +
Sbjct: 75 LATLLPKLTTRIVEWL---------EEYASKKGRKPSAYAP-LQLLKPEASAFITLK--- 121
Query: 269 GLVMAGHEDRCVQVVQAAVH-IGMAIEQEIRIHSFLEKTKNYKRKKIIADTEEVLSK-EK 326
+++A + +QAA +G AIE E R + ++ + K EE L+K
Sbjct: 122 -VILASLTSTNMTTIQAAAGMLGKAIEDEAR----FGRIRDLEAKHFKKHVEEQLNKRHG 176
Query: 327 ELLRKRVNSLIKSKRVMEAQKLLKNEETKPWGRDTQAKLGSRLVELLIE-TAYVQHPVNP 385
++ +K ++++ M + LL E W ++T +G RL+E+LIE T V+ +
Sbjct: 177 QVYKKAFMQVVEAD--MIGRGLLGGEAWSSWDKETTMHVGIRLIEMLIESTGLVELQRHN 234
Query: 386 ADYSPPDVRPAFRHRFKTILKHPGQKTTKRYGVVECDPLVLEGLDRSAKHMLIPYVPMLV 445
A + D H + + KR G L G+ + P +V
Sbjct: 235 AGNAGSD------HEALQLAQEYVDVLAKRAGA-------LAGISPM-------FQPCVV 274
Query: 446 PPKKWKGYNKGGYLF---LPSYVMRTHGSRKQQEALKSVTGNCMKKVFEALDTLGSTKWR 502
PPK W GGY P ++RTH + L M +V++A++ +T W+
Sbjct: 275 PPKPWVAITGGGYWANGRRPLALVRTHSKK----GLMRYEDVYMPEVYKAVNLAQNTAWK 330
Query: 503 VNKQVLSVLESIWVSGGN--IAGLVDRNDVLIPEKPLSEDMTE--VQKWKWSVRKAKKIN 558
+NK+VL+V+ I V+ N +A + +P KP D E +++WK + +++
Sbjct: 331 INKKVLAVVNEI-VNWKNCPVADIPSLERQELPPKPDDIDTNEAALKEWKKAAAGIYRLD 389
Query: 559 QERHSQRCDTELKLSVARRMKDEEGFYYPHNLDFRGRAYPMHPHLNHLSSDVCRGVLEFA 618
+ R S+R E L A + ++ ++P+N+D+RGR Y + P N +D+ +G+L A
Sbjct: 390 KARVSRRISLEFMLEQANKFASKKAIWFPYNMDWRGRVYAV-PMFNPQGNDMTKGLLTLA 448
Query: 619 EGRPLGKSGLRWLKIHLANLFSGGVEKLSHDGRLAFVENHLYEIFDSAENPINGSRWWLT 678
+G+P+G+ G WLKIH AN GV+K+ R+AF+E H+ +I A++PIN + WW
Sbjct: 449 KGKPIGEEGFYWLKIHGAN--CAGVDKVPFPERIAFIEKHVDDILACAKDPINNT-WWAE 505
Query: 679 AEDPFQCLAACINLSEALKSSSPHSVISH---LPIHQDGSCNGLQHYAALGRNTLEAAAV 735
+ PF LA C + H +S+ LP+ DGSC+G+QH++A+ R+ + AV
Sbjct: 506 QDSPFCFLAFCFEYA-----GVTHHGLSYNCSLPLAFDGSCSGIQHFSAMLRDEVGGRAV 560
Query: 736 NLVAGEKPADVYSEIAVRVHEIMKRD------------SNKDPSKHPQ-------ALLAK 776
NL+ E D+Y +A +V+EI+K+D ++KD + + L +
Sbjct: 561 NLLPSETVQDIYGIVAQKVNEILKQDAINGTPNEMITVTDKDTGEISEKLKLGTSTLAQQ 620
Query: 777 ILIDQVDRKLVKQTVMTSVYGVTFVGAREQIKRRLEEKGHITDDRQLFA----AACYAAK 832
L V R + K++VMT YG G R+Q+ + + +F AA Y AK
Sbjct: 621 WLAYGVTRSVTKRSVMTLAYGSKEFGFRQQVLDDTIQPAIDSGKGLMFTQPNQAAGYMAK 680
Query: 833 VTLTALGEIFEAARSIMGWLGDCAKVIASENQ------------PVRWTTPLGLPVVQPY 880
+ A+ AA M WL AK++A+E + V WTTP G PV Q Y
Sbjct: 681 LIWDAVSVTVVAAVEAMNWLKSAAKLLAAEVKDKKTKEILRHRCAVHWTTPDGFPVWQEY 740
Query: 881 CKN-ERHLIRTSLQVLALQREGNLVK-----IRKQRTAFPPNFVHSLDGSHMMMTAV 931
K ++ L L LQ N +K KQ + PNFVHS DGSH+ MT V
Sbjct: 741 RKPLQKRLDMIFLGQFRLQPTINTLKDSGIDAHKQESGIAPNFVHSQDGSHLRMTVV 797
>gi|9633997|ref|NP_052071.1| RNA polymerase [Yersinia phage phiYeO3-12]
gi|6598988|emb|CAB63592.1| RNA polymerase [Yersinia phage phiYeO3-12]
Length = 884
Score = 263 bits (671), Expect = 4e-67, Method: Compositional matrix adjust.
Identities = 227/777 (29%), Positives = 363/777 (46%), Gaps = 108/777 (13%)
Query: 209 LAPNLPHIKGLFLGWFGPLSEAIEREQKMQRTKKQKAAYAPHIELLPADKVAVIVMHKMM 268
LA LP + + W E+ + ++ AYAP L P + A I +
Sbjct: 75 LATLLPKLTTRIVEWL---------EEYATKKGRKPVAYAPLQSLKP-EASAFITLK--- 121
Query: 269 GLVMAGHEDRCVQVVQAAVH-IGMAIEQEIRIHSFLEKTKNYKRKKIIADTEEVLSK-EK 326
+++A + +QAA +G AIE E R + ++ + K EE L+K
Sbjct: 122 -VILASLTSTNMTTIQAAAGMLGKAIEDEAR----FGRIRDLEAKHFKKHVEEQLNKRHG 176
Query: 327 ELLRKRVNSLIKSKRVMEAQKLLKNEETKPWGRDTQAKLGSRLVELLIE-TAYVQHPVNP 385
++ +K ++++ M + LL E W ++T +G RL+E+LIE T V+ +
Sbjct: 177 QVYKKAFMQVVEAD--MIGRGLLGGEAWSSWDKETTMHVGIRLIEMLIESTGLVELQRHN 234
Query: 386 ADYSPPDVRPAFRHRFKTILKHPGQKTTKRYGVVECDPLVLEGLDRSAKHMLIPYVPMLV 445
A + D H + + KR G L G+ + P +V
Sbjct: 235 AGNAGSD------HEALQLAQEYVDVLAKRAGA-------LAGISPM-------FQPCVV 274
Query: 446 PPKKWKGYNKGGYLF---LPSYVMRTHGSRKQQEALKSVTGNCMKKVFEALDTLGSTKWR 502
PPK W GGY P ++RTH + L M +V++A++ +T W+
Sbjct: 275 PPKPWVAITGGGYWANGRRPLALVRTHSKK----GLMRYEDVYMPEVYKAVNIAQNTAWK 330
Query: 503 VNKQVLSVLESIWVSGGN--IAGLVDRNDVLIPEKPLSEDMTE--VQKWKWSVRKAKKIN 558
+NK+VL+V+ I V+ N +A + +P KP D E +++WK + +++
Sbjct: 331 INKKVLAVVNEI-VNWKNCPVADIPSLERQELPPKPDDIDTNEAALKEWKKAAAGIYRLD 389
Query: 559 QERHSQRCDTELKLSVARRMKDEEGFYYPHNLDFRGRAYPMHPHLNHLSSDVCRGVLEFA 618
+ R S+R E L A + ++ ++P+N+D+RGR Y + P N +D+ +G+L A
Sbjct: 390 KARVSRRISLEFMLEQANKFASKKAIWFPYNMDWRGRVYAV-PMFNPQGNDMTKGLLTLA 448
Query: 619 EGRPLGKSGLRWLKIHLANLFSGGVEKLSHDGRLAFVENHLYEIFDSAENPINGSRWWLT 678
+G+P+G+ G WLKIH AN GV+K+ R+AF+E H+ +I A++PIN + WW
Sbjct: 449 KGKPIGEEGFYWLKIHGAN--CAGVDKVPFPERIAFIEKHVDDILACAKDPINNT-WWAE 505
Query: 679 AEDPFQCLAACINLSEALKSSSPHSVISH---LPIHQDGSCNGLQHYAALGRNTLEAAAV 735
+ PF LA C + H +S+ LP+ DGSC+G+QH++A+ R+ + AV
Sbjct: 506 QDSPFCFLAFCFEYA-----GVAHHGLSYNCSLPLAFDGSCSGIQHFSAMLRDEVGGRAV 560
Query: 736 NLVAGEKPADVYSEIAVRVHEIMKRD------------SNKDPSKHPQ-------ALLAK 776
NL+ E D+Y +A +V+EI+K+D ++KD + + L +
Sbjct: 561 NLLPSETVQDIYGIVAQKVNEILKQDAINGTPNEMITVTDKDTGEISEKLKLGTSTLAQQ 620
Query: 777 ILIDQVDRKLVKQTVMTSVYGVTFVGAREQIKRRLEEKGHITDDRQLFA----AACYAAK 832
L V R + K++VMT YG G R+Q+ + + +F AA Y AK
Sbjct: 621 WLAYGVTRSVTKRSVMTLAYGSKEFGFRQQVLDDTIQPAIDSGKGLMFTQPNQAAGYMAK 680
Query: 833 VTLTALGEIFEAARSIMGWLGDCAKVIASENQ------------PVRWTTPLGLPVVQPY 880
+ A+ AA M WL AK++A+E + V WTTP G PV Q Y
Sbjct: 681 LIWDAVSVTVVAAVEAMNWLKSAAKLLAAEVKDKKTKEILRHRCAVHWTTPDGFPVWQEY 740
Query: 881 CKN-ERHLIRTSLQVLALQREGNLVK-----IRKQRTAFPPNFVHSLDGSHMMMTAV 931
K ++ L L LQ N +K KQ + PNFVHS DGSH+ MT V
Sbjct: 741 RKPLQKRLDMIFLGQFRLQPTINTLKDSGIDAHKQESGIAPNFVHSQDGSHLRMTVV 797
>gi|340058755|emb|CCC53117.1| mitochondrial DNA-directed RNA polymerase,putative, (fragment),
partial [Trypanosoma vivax Y486]
Length = 517
Score = 262 bits (670), Expect = 5e-67, Method: Compositional matrix adjust.
Identities = 161/399 (40%), Positives = 217/399 (54%), Gaps = 31/399 (7%)
Query: 560 ERHSQRCDTELKLSVARRMKDEEGFYYPHNLDFRGRAYPMHPHLNHLSSDVCRGVLEFAE 619
E S R L AR + Y+P+++DFRGR YP+ LNH SD R +LE+AE
Sbjct: 49 ELRSNRIHYLQALRQARSLVQFSHIYFPNSMDFRGRMYPLPGRLNHTGSDPFRALLEYAE 108
Query: 620 GRPLGKSGLRWLKIHLANLFSGGVEKLSHDGRLAFVENHLYEIFDSAENPINGSRWWLTA 679
+PLGK GL WLK+HLAN G+ KLS D R+ +V H+ ++ SAE P+ G +WW A
Sbjct: 109 PKPLGKEGLYWLKVHLANKM--GMSKLSFDERVHYVNEHIDDVVRSAELPLYGDKWWQEA 166
Query: 680 EDPFQCLAACINLSEALK-SSSPHSVISHLPIHQDGSCNGLQHYAALGRNTLEAAAVNLV 738
+P QCL AC L++ALK S P + +S +P+ DGS NGLQHY+A+GR+ A VNLV
Sbjct: 167 AEPMQCLMACKELADALKCSQGPENFLSRIPVAVDGSYNGLQHYSAIGRDAFGAQLVNLV 226
Query: 739 AGEKPADVYSEIAVRVHEIMKRDSNKDPSKHPQALLAKIL-------IDQVDRKLVKQTV 791
E+PAD Y+ I + + D+ +D HP A + L D + RK +K+ +
Sbjct: 227 PSERPADAYTGILKEMMRSITADAARD---HPVA--QRCLGTGKGQDCDHIKRKTIKRPI 281
Query: 792 MTSVYGVTFVGAREQIKRRL--EEKGH----ITDDRQLFAAACYAAKVTLTALGEIFEAA 845
MT VYGVT G EQI L + K H TD R++ A Y + L +LG F
Sbjct: 282 MTQVYGVTGYGMSEQILDELVKQNKNHGLWTSTDMREM---ADYLREKVLESLGITFRET 338
Query: 846 RSIMGWLGDCAKVIASENQPVR------WTTPLGLPVVQPYCKNERHLIRTSLQVLALQR 899
++ W+ D +I E QP WTTPLGL V QPY + +I T +
Sbjct: 339 QNCRRWITDVTNIIW-EVQPAELRTALCWTTPLGLVVRQPYKVRKEMMIFTVHGCSRVPG 397
Query: 900 EGNLVKIRKQRTAFPPNFVHSLDGSHMMMTAVACRDAGL 938
RKQ TA PN +HSLD SH+ MTA+ ++ GL
Sbjct: 398 NAYSAASRKQLTAIAPNLIHSLDASHLAMTAIEMQNLGL 436
>gi|154338315|ref|XP_001565382.1| putative mitochondrial DNA-directed RNA polymerase [Leishmania
braziliensis MHOM/BR/75/M2904]
gi|134062431|emb|CAM42292.1| putative mitochondrial DNA-directed RNA polymerase [Leishmania
braziliensis MHOM/BR/75/M2904]
Length = 1299
Score = 261 bits (666), Expect = 2e-66, Method: Compositional matrix adjust.
Identities = 176/495 (35%), Positives = 254/495 (51%), Gaps = 51/495 (10%)
Query: 489 VFEALDTLGSTKWRVNKQVLSVLESIW--------------------VSGGNIAGLVDR- 527
+ +ALD + WR+NK +L V E+I +S G+I DR
Sbjct: 730 MMKALDAISRVPWRINKYMLHVQEAIVREGFGFGKIRPGFYPLHYYSMSDGDIKYPSDRR 789
Query: 528 -NDVLIPEKPLSEDMTEVQKWKWSVRKAKKINQ--------ERHSQRCDTELKLSVARRM 578
+ +L +D+ + R+ + Q E S R L L AR +
Sbjct: 790 RSALLNSNDNDGDDLAAGDVFNLQQRRQCTLQQRQDWKELCELRSSRIHYLLGLRQARSI 849
Query: 579 KDEEGFYYPHNLDFRGRAYPMHPHLNHLSSDVCRGVLEFAEGRPLGKSGLRWLKIHLANL 638
Y+P+++DFRGR YP+ LNH SD RG+LE+AE +PLG+ GL WLK+HLAN
Sbjct: 850 VQFSHIYFPNSMDFRGRMYPLPGRLNHTGSDPFRGLLEYAEPKPLGEVGLYWLKVHLANK 909
Query: 639 FSGGVEKLSHDGRLAFVENHLYEIFDSAENPINGSRWWLTAEDPFQCLAACINLSEALK- 697
G+ KLS D R+ +V+ H+ ++ SAENP++G RWW A +P QCL AC +++A K
Sbjct: 910 M--GMSKLSFDERVHYVDEHMEDVVQSAENPLSGDRWWQEASEPIQCLMACKEVADAAKC 967
Query: 698 SSSPHSVISHLPIHQDGSCNGLQHYAALGRNTLEAAAVNLVAGEKPADVYSEIAVRVHEI 757
S +S LP+ DGS NGLQHY+A+GR+ A VNLV E+PAD Y+ I + +
Sbjct: 968 SQGAEKFLSRLPVAVDGSYNGLQHYSAIGRDAFGAKLVNLVPSERPADAYTGILKEMLKS 1027
Query: 758 MKRDSNKDPSKHPQALLAKILIDQ--VDRKLVKQTVMTSVYGVTFVGAREQIKRRL--EE 813
+ D+++D + L D+ + RK +K+ +MT VYGVT G EQI L +
Sbjct: 1028 ICIDADRDHQVAQRCLGTGRGQDKDHIKRKTIKRPIMTQVYGVTSYGMSEQILDELVKQN 1087
Query: 814 KGHI----TDDRQLFAAACYAAKVTLTALGEIFEAARSIMGWLGDCAKVI-----ASENQ 864
K H TD +++ A Y L +LG F ++ W+ + A ++ A
Sbjct: 1088 KSHGLWTHTDMKEM---AAYLRDKVLESLGVTFRETQNCRRWISEVAALLWKVQPAELRN 1144
Query: 865 PVRWTTPLGLPVVQPY-CKNERHLIRTSLQVLALQREGNLVKIRKQRTAFPPNFVHSLDG 923
+ WTTPLGL V QPY +NE L T + + RKQ TA PN +HSLD
Sbjct: 1145 ALCWTTPLGLVVRQPYKVRNECSLF-TPHGYSRVPGDSVAPASRKQLTAIAPNLIHSLDA 1203
Query: 924 SHMMMTAVACRDAGL 938
+H+ MTA+ + GL
Sbjct: 1204 THLAMTALEMQHQGL 1218
>gi|344299821|gb|EGW30174.1| hypothetical protein SPAPADRAFT_57614 [Spathaspora passalidarum
NRRL Y-27907]
Length = 1073
Score = 261 bits (666), Expect = 2e-66, Method: Compositional matrix adjust.
Identities = 184/582 (31%), Positives = 283/582 (48%), Gaps = 74/582 (12%)
Query: 415 RYGVVECDPLVLEGLDRSAKHMLIPYVPMLVPPKKWKGYNKGGYLFLPSYVMRTHGSRKQ 474
+Y V++ P +LE D S + PM+VPPK W +GGYL V +
Sbjct: 353 KYPVIKIHP-ILEN-DLSNCRGKVSRFPMVVPPKPWTNLFEGGYLVHKECVFMARFDKTY 410
Query: 475 QEALKSVTGNC-MKKVFEALDTLGSTKWRVNKQVLSVLESIWVSGGNIAGLVDRNDVLIP 533
K V+ + + VF L+ LGS W +N +L +L N A + + + IP
Sbjct: 411 LNYFKQVSYDGHLDSVFMTLNKLGSLAWAINPDMLKIL--------NRAANMPQGFLKIP 462
Query: 534 EKPLSEDMTEVQKWKWSVRKAKKINQERHSQRCDTELKLSVARRM-KDEEGFYYPHNLDF 592
+P+S+ +V K+K + K I+ + R + L +A K+ E Y P+ LDF
Sbjct: 463 -RPISD---KVPKFKDKFAQQKYISSK--GARITFNMLLDMANGFSKNGEMLYTPYQLDF 516
Query: 593 RGRAYPMHPHLNHLSSDVCRGVLEFAEGRPLGKSGLRWLKIHLANLFSGGVEKLSHDGRL 652
RGR YP +L+H+ SD R + F + LG G WLK HL+++F G + +
Sbjct: 517 RGRVYP-SSNLSHILSDEFRCLFMFWHSKALGNDGFNWLKYHLSSMF--GNSGFHMEQAI 573
Query: 653 AFVENHLYEIFDSAENPINGSRWWLTAEDPFQCLAACINLSEALKSSSPHSVI----SHL 708
F + H +I DSA+ P +G +WWL ++ P+Q L+AC+ L++ + I +
Sbjct: 574 GFCDKHKQDIIDSAKYPFDGKQWWLKSKTPYQTLSACMELTKVWEFEEQGGNIEEFRTRF 633
Query: 709 PIHQDGSCNGLQHYAALGRNTLEAAAVNLVAGEKPADVYSEIAVRVHEIMKRDSNKDPSK 768
P+HQDGSCNGLQHYAAL R+ AVNL+ K D+Y E+A V K + D
Sbjct: 634 PVHQDGSCNGLQHYAALTRDERGGKAVNLLDEPKKQDIYMEVANIVES--KLQALIDSPD 691
Query: 769 HPQALLAKILIDQVDRKLVKQTVMTSVYGVTFVGAREQIKRRLEE-----------KGHI 817
+ L AK+ + + RKLVK TVMT+VYGVT +GA Q++ R+++ KG I
Sbjct: 692 ETERLYAKLGLIVLSRKLVKTTVMTTVYGVTTIGAAGQVRNRIKDFVDDCNQNPQMKGTI 751
Query: 818 TDD------RQLFAAACYAAKVTLTALGEIFEAARSIMGWLG-DCAKVIASEN------- 863
+++ + F + A V L ++ +F A ++ WL + +V++S N
Sbjct: 752 SEEALEKIQSESFKLGMFLANVILGSISSLFAPATAVQQWLRVNIKRVLSSFNSKSVMYI 811
Query: 864 ------------------QPVRWTTPLGLPVVQPYCK--NERHLIRTSLQVLALQREGNL 903
+P+ W P G PV+Q Y K N ++ V+A Q + L
Sbjct: 812 KNMKPELFEKVFTQPQSLRPIIWKVPSGFPVIQYYVKSPNNQNFQSVLSSVVASQGKRTL 871
Query: 904 VKIRKQRT--AFPPNFVHSLDGSHMMMTAVACRDAGLHFAGL 943
+ K ++ PN++HSLD HMM T + GL FA +
Sbjct: 872 SPMSKYKSVNGIAPNYIHSLDAVHMMWTCNNMYNEGLSFAAV 913
>gi|323512036|gb|ADX87497.1| T3/T7-like RNA polymerase [Vibrio phage ICP3_2009_B]
Length = 883
Score = 258 bits (659), Expect = 1e-65, Method: Compositional matrix adjust.
Identities = 226/757 (29%), Positives = 352/757 (46%), Gaps = 115/757 (15%)
Query: 249 PHIE-----LLPADKVAVIVMHKMMGLVMAGHEDRCVQVVQAAVHIGMAIEQEIRIHSFL 303
PH+ ++ + A I++ + ++ ++ V V + A+ IG IE EIR
Sbjct: 98 PHVSKGYFAMIKPESAAFIIVKTTLNILA---KEESVPVQRVAMAIGGNIEDEIRFGRIR 154
Query: 304 -EKTKNYKRKKIIADTEEVLSKEKELLRKRVNSLIKSKRVMEA------QKLLKNEETKP 356
E+ K++K + K L KR N I K MEA K N +
Sbjct: 155 DEEIKHFKERV------------KPNLDKR-NGFIYKKAYMEAVEAGMQDKGELNSTHEA 201
Query: 357 WGRDTQAKLGSRLVELLIE-TAYVQHPVNPADYSPPDVRPAFRHRFKTILKHPGQKTTKR 415
W +D + +G R +E+LIE T VQ +FK I K
Sbjct: 202 WEKDVKFHVGIRAIEMLIEATGMVQ----------------LERKFKGI-------PDKD 238
Query: 416 YGVVECDPLVLEGLDRSAKHM--LIP-YVPMLVPPKKWKGYNKGGYLF---LPSYVMRTH 469
+ + P +E L A + + P Y PM+V PK+W G GGY P ++R
Sbjct: 239 HEALHLAPEYVEKLTNRAHALAGISPMYQPMIVKPKRWTGVQGGGYWAKGRRPLNLIRV- 297
Query: 470 GSRKQQEALKSVTGNCMKKVFEALDTLGSTKWRVNKQVLSVLESIWVSGGNIAGLVDRND 529
GS++ + + V M +V++A++T+ T WR+NK VL+V+ ++ V D
Sbjct: 298 GSKRALDRYRQVG---MPEVYDAINTIQETAWRINKDVLAVVNNVVTWVNCPVEDVPSID 354
Query: 530 VL-IPEKPLSEDMTE--VQKWKWSVRKAKKINQERHSQRCDTELKLSVARRMKDEEGFYY 586
L +PEKP D E ++KWK + + + R S+R E LS A + Y+
Sbjct: 355 KLALPEKPEDIDNNEESLKKWKKAAAAIYRKEKARQSRRISLEFALSQANKFSKYNEIYF 414
Query: 587 PHNLDFRGRAYPMHPHLNHLSSDVCRGVLEFAEGRPLGKSGLRWLKIHLANLFSGGVEKL 646
P+N+D+RGR Y + P N +D+ +G+L FA+ P+G G WL +H AN GV+K+
Sbjct: 415 PYNMDWRGRVYAI-PMFNPQGNDMVKGLLTFAKKVPVGIDGGYWLAVHGAN--CAGVDKV 471
Query: 647 SHDGRLAFVENHLYEIFDSAENPINGSRWWLTAEDPFQCLAACINLSEALKSSSPHSVIS 706
S + R+ +V ++ I SAE P++ + WW + PF LA C + +K+ S S
Sbjct: 472 SLEDRVKWVNDNEANIIASAEAPLDFT-WWAEQDSPFCFLAFCFEWAAYVKAGKKPSFES 530
Query: 707 HLPIHQDGSCNGLQHYAALGRNTLEAAAVNLVAGEKPADVYSEIAVRVHEIMKR---DSN 763
LP+ DG+C+GLQH++A+ R+ + AAVNL+ +KP D+Y +AV+V+E+++
Sbjct: 531 SLPLAFDGTCSGLQHFSAMLRDEIGGAAVNLLPADKPQDIYDIVAVKVNEVLRDLVISGT 590
Query: 764 KDPSK----------------HPQALLAKILIDQVDRKLVKQTVMTSVYGVTFVGAREQI 807
+D + + L A+ L V R + K++VMT YG G +Q+
Sbjct: 591 EDEMQTLEDKKTGEITERLVLGTRTLAAQWLEYGVTRSVTKRSVMTLAYGSKEYGFADQV 650
Query: 808 KRRLEEKGHITDDRQLF---AAAC-YAAKVTLTALGEIFEAARSIMGWLGDCAKVIASEN 863
+F + AC + AK+ A+ + AA M WL AK+++SE
Sbjct: 651 FEDTVMPAIDNGKGAMFTEPSQACRFMAKLIWDAVSKTVVAAVEAMQWLQSAAKLVSSEV 710
Query: 864 Q------------PVRWTTPLGLPVVQPYCKNERHLIRTSLQVLALQREGNLVKIR---- 907
+ PV WTTP G PV Y K E+ R +L R + IR
Sbjct: 711 KDKKSGEILKHAMPVHWTTPNGFPVWSEYYKQEQK--RIDCVILGTHRMALTINIRDKKE 768
Query: 908 ----KQRTAFPPNFVHSLDGSHMMMTAVAC-RDAGLH 939
KQ + PNFVHS+D SH+ MT C + G+H
Sbjct: 769 IDAAKQTSGIAPNFVHSMDASHLQMTVNKCFKVYGIH 805
>gi|407860406|gb|EKG07407.1| mitochondrial DNA-directed RNA polymerase, putative [Trypanosoma
cruzi]
Length = 1277
Score = 258 bits (659), Expect = 1e-65, Method: Compositional matrix adjust.
Identities = 155/394 (39%), Positives = 217/394 (55%), Gaps = 21/394 (5%)
Query: 560 ERHSQRCDTELKLSVARRMKDEEGFYYPHNLDFRGRAYPMHPHLNHLSSDVCRGVLEFAE 619
E+ S R L AR + Y+P+++DFRGR YP+ LNH SD R +LE+AE
Sbjct: 809 EQRSNRIHYLQALRQARSLVQFSHIYFPNSMDFRGRMYPLPGRLNHTGSDPFRALLEYAE 868
Query: 620 GRPLGKSGLRWLKIHLANLFSGGVEKLSHDGRLAFVENHLYEIFDSAENPINGSRWWLTA 679
+PLG++GL WLK+HLAN G+ KLS D R+ +V H+ ++ SAE+P++G +WW A
Sbjct: 869 PKPLGETGLYWLKVHLANKM--GMSKLSFDERVHYVNEHIEDVVQSAESPLHGDKWWQEA 926
Query: 680 EDPFQCLAACINLSEALK-SSSPHSVISHLPIHQDGSCNGLQHYAALGRNTLEAAAVNLV 738
+P QCL AC L++ALK S + +S +P+ DGS NGLQHY+A+GR+ A VNLV
Sbjct: 927 AEPMQCLMACKELADALKCSQGAENYLSRIPVAVDGSYNGLQHYSAIGRDAFGAQLVNLV 986
Query: 739 AGEKPADVYSEIAVRVHEIMKRDSNKDPSKHPQALLAKILID--QVDRKLVKQTVMTSVY 796
E+PAD Y+ I + + D+ KD + L D V RK +K+ +MT VY
Sbjct: 987 PSERPADAYTGILKEMMRSIMADAEKDNPVAQRCLGTGKGQDCNHVKRKTIKRPIMTQVY 1046
Query: 797 GVTFVGAREQIKRRL--EEKGH----ITDDRQLFAAACYAAKVTLTALGEIFEAARSIMG 850
GVT G EQI L + K H TD R++ A Y + L +LG F ++
Sbjct: 1047 GVTGYGMSEQILDELVKQNKNHGLWTSTDMREM---ADYLREKVLESLGITFRETQNCRR 1103
Query: 851 WLGDCAKVIASENQPVR------WTTPLGLPVVQPYCKNERHLIRTSLQVLALQREGNLV 904
W+ + +I E QP WTTPLGL V QPY + + T + +
Sbjct: 1104 WITEVTNMIW-EAQPAELRTALCWTTPLGLVVRQPYKVRKEITLFTPHGCSRIPGDAFSA 1162
Query: 905 KIRKQRTAFPPNFVHSLDGSHMMMTAVACRDAGL 938
RKQ TA PN +HSLD +H+ MTA+ ++ GL
Sbjct: 1163 ASRKQLTAIAPNLIHSLDATHLAMTAIEMQNLGL 1196
>gi|71665631|ref|XP_819783.1| mitochondrial DNA-directed RNA polymerase [Trypanosoma cruzi strain
CL Brener]
gi|70885100|gb|EAN97932.1| mitochondrial DNA-directed RNA polymerase, putative [Trypanosoma
cruzi]
Length = 1278
Score = 258 bits (658), Expect = 1e-65, Method: Compositional matrix adjust.
Identities = 177/509 (34%), Positives = 254/509 (49%), Gaps = 53/509 (10%)
Query: 477 ALKSVTGNCM----KKVFEALDTLGSTKWRVNKQVLSVLESIWVSG-------------- 518
A+K T M + +ALD + WR++K +L V E+I G
Sbjct: 695 AVKGSTNQAMIISQAPMMKALDAISRVPWRISKYMLHVQEAIVREGYGFGKIRPAFYPLH 754
Query: 519 ------GNIAGLVDRNDVLIPEKPLSEDMTEVQKWKWSVRKAKKINQ--------ERHSQ 564
G+I+ V N +D + + + R+ Q E+ S
Sbjct: 755 YCAKSRGDISYDVAGNADAAAAADSYDDGDDCEVYNLQQRREYDTQQDEDWKSLSEQRSN 814
Query: 565 RCDTELKLSVARRMKDEEGFYYPHNLDFRGRAYPMHPHLNHLSSDVCRGVLEFAEGRPLG 624
R L AR + Y+P+++DFRGR YP+ LNH SD R +LE+AE +PLG
Sbjct: 815 RIHYLQALRQARSLVQFSHIYFPNSMDFRGRMYPLPGRLNHTGSDPFRALLEYAEPKPLG 874
Query: 625 KSGLRWLKIHLANLFSGGVEKLSHDGRLAFVENHLYEIFDSAENPINGSRWWLTAEDPFQ 684
++GL WLK+HLAN G+ KLS D R+ +V H+ ++ SAE+P++G +WW A +P Q
Sbjct: 875 ETGLYWLKVHLANKM--GMSKLSFDERVHYVNEHIEDVVQSAESPLHGDKWWQEAAEPMQ 932
Query: 685 CLAACINLSEALK-SSSPHSVISHLPIHQDGSCNGLQHYAALGRNTLEAAAVNLVAGEKP 743
CL AC L++ALK S + +S +P+ DGS NGLQHY+A+GR+ A VNLV E+P
Sbjct: 933 CLMACKELADALKCSQGAENYLSRIPVAVDGSYNGLQHYSAIGRDAFGAQLVNLVPSERP 992
Query: 744 ADVYSEIAVRVHEIMKRDSNKDPSKHPQALLAKILID--QVDRKLVKQTVMTSVYGVTFV 801
AD Y+ I + + D+ KD + L D V RK +K+ +MT VYGVT
Sbjct: 993 ADAYTGILKEMMRSIMADAEKDNPVAQRCLGTGKGQDCNHVKRKTIKRPIMTQVYGVTGY 1052
Query: 802 GAREQIKRRL--EEKGH----ITDDRQLFAAACYAAKVTLTALGEIFEAARSIMGWLGDC 855
G EQI L + K H TD R++ A Y + L +LG F ++ W+ +
Sbjct: 1053 GMSEQILDELVKQNKNHGLWTPTDMREM---ADYLREKVLESLGITFRETQNCRRWITEV 1109
Query: 856 AKVIASENQPVR------WTTPLGLPVVQPYCKNERHLIRTSLQVLALQREGNLVKIRKQ 909
+I E QP WTTPLGL V QPY + + T + + RKQ
Sbjct: 1110 TNMIW-EAQPAELRTALCWTTPLGLVVRQPYKVRKEITLFTPHGCSRIPGDAFSAASRKQ 1168
Query: 910 RTAFPPNFVHSLDGSHMMMTAVACRDAGL 938
TA PN +HSLD +H+ MTA+ ++ GL
Sbjct: 1169 LTAIAPNLIHSLDATHLAMTAIEMQNLGL 1197
>gi|407425509|gb|EKF39474.1| mitochondrial DNA-directed RNA polymerase, putative [Trypanosoma
cruzi marinkellei]
Length = 1328
Score = 257 bits (657), Expect = 2e-65, Method: Compositional matrix adjust.
Identities = 155/394 (39%), Positives = 217/394 (55%), Gaps = 21/394 (5%)
Query: 560 ERHSQRCDTELKLSVARRMKDEEGFYYPHNLDFRGRAYPMHPHLNHLSSDVCRGVLEFAE 619
E+ S R L AR + Y+P+++DFRGR YP+ LNH SD R +LE+AE
Sbjct: 860 EQRSNRIHYLQALRQARSLVQFSHIYFPNSMDFRGRMYPLPGRLNHTGSDPFRALLEYAE 919
Query: 620 GRPLGKSGLRWLKIHLANLFSGGVEKLSHDGRLAFVENHLYEIFDSAENPINGSRWWLTA 679
+PLG++GL WLK+HLAN G+ KLS D R+ +V H+ ++ SAE+P++G +WW A
Sbjct: 920 PKPLGETGLYWLKVHLANKM--GMSKLSFDERVHYVNEHIEDVVRSAESPLHGDKWWQEA 977
Query: 680 EDPFQCLAACINLSEALK-SSSPHSVISHLPIHQDGSCNGLQHYAALGRNTLEAAAVNLV 738
+P QCL AC L++ALK S + +S +P+ DGS NGLQHY+A+GR+ A VNLV
Sbjct: 978 AEPMQCLMACKELADALKCSQGAENYLSRIPVAVDGSYNGLQHYSAIGRDAFGAQLVNLV 1037
Query: 739 AGEKPADVYSEIAVRVHEIMKRDSNKDPSKHPQALLAKILID--QVDRKLVKQTVMTSVY 796
E+PAD Y+ I + + D+ KD + L D V RK +K+ +MT VY
Sbjct: 1038 PSERPADAYTGILKEMMRSILADAEKDNPVAQRCLGTGKGQDCNHVKRKTIKRPIMTQVY 1097
Query: 797 GVTFVGAREQIKRRL--EEKGH----ITDDRQLFAAACYAAKVTLTALGEIFEAARSIMG 850
GVT G EQI L + K H TD R++ A Y + L +LG F ++
Sbjct: 1098 GVTGYGMSEQILDELVKQNKNHGLWTSTDMREM---AGYLREKVLESLGITFRETQNCRR 1154
Query: 851 WLGDCAKVIASENQPVR------WTTPLGLPVVQPYCKNERHLIRTSLQVLALQREGNLV 904
W+ + +I E QP WTTPLGL V QPY + + T + +
Sbjct: 1155 WITEVTNMIW-EAQPAELRTALCWTTPLGLVVRQPYKVRKEITLFTPHGCSRIPGDAFSA 1213
Query: 905 KIRKQRTAFPPNFVHSLDGSHMMMTAVACRDAGL 938
RKQ TA PN +HSLD +H+ MTA+ ++ GL
Sbjct: 1214 ASRKQLTAIAPNLIHSLDATHLAMTAIEMQNLGL 1247
>gi|401422884|ref|XP_003875929.1| mitochondrial DNA-directed RNA polymerase,putative [Leishmania
mexicana MHOM/GT/2001/U1103]
gi|322492169|emb|CBZ27443.1| mitochondrial DNA-directed RNA polymerase,putative [Leishmania
mexicana MHOM/GT/2001/U1103]
Length = 1511
Score = 256 bits (654), Expect = 4e-65, Method: Compositional matrix adjust.
Identities = 162/438 (36%), Positives = 237/438 (54%), Gaps = 38/438 (8%)
Query: 516 VSGGNIAGLVDRNDVLIPEKPLSEDMTEVQKWKWSVRKAKKINQERHSQRCDTELKLSVA 575
++ G++ L+ R ++ +K Q WK ++++ R S R L L A
Sbjct: 1016 LAAGDVFNLLQRRQCILQQK---------QDWK-------ELSELR-SSRIHYLLGLRQA 1058
Query: 576 RRMKDEEGFYYPHNLDFRGRAYPMHPHLNHLSSDVCRGVLEFAEGRPLGKSGLRWLKIHL 635
R + Y+P+++DFRGR YP+ LNH SD RG+LE+AE +PLG GL WLK+HL
Sbjct: 1059 RSIVQFSHIYFPNSMDFRGRMYPLPGRLNHTGSDPFRGLLEYAEPKPLGAVGLYWLKVHL 1118
Query: 636 ANLFSGGVEKLSHDGRLAFVENHLYEIFDSAENPINGSRWWLTAEDPFQCLAACINLSEA 695
AN G+ KLS D R+ +V+ H+ ++ SAE+P+ G RWW A +P QCL AC +++A
Sbjct: 1119 ANKM--GMSKLSFDERVHYVDEHMEDVVQSAESPLVGDRWWQEASEPIQCLMACKEVADA 1176
Query: 696 LK-SSSPHSVISHLPIHQDGSCNGLQHYAALGRNTLEAAAVNLVAGEKPADVYSEIAVRV 754
+K S P +S LP+ DGS NGLQHY+A+GR+ A VNLV E+PAD Y+ I +
Sbjct: 1177 MKCSQGPEKFLSRLPVAVDGSYNGLQHYSAIGRDAFGAKLVNLVPSERPADAYTGILKEM 1236
Query: 755 HEIMKRDSNKDPSKHPQALLAKILIDQ--VDRKLVKQTVMTSVYGVTFVGAREQIKRRL- 811
+ + D+++D + L D+ + RK +K+ +MT VYGVT G EQI L
Sbjct: 1237 LKSICIDADRDHQVAQRCLGTGRGQDKDHIKRKTIKRPIMTQVYGVTGYGMSEQIFDELV 1296
Query: 812 -EEKGHI----TDDRQLFAAACYAAKVTLTALGEIFEAARSIMGWLGDCAKVI-----AS 861
+ K H TD +++ A Y L +LG F ++ W+ + ++ A
Sbjct: 1297 KQNKSHGLWTHTDMKEM---AAYLRDKVLESLGITFRETQNCRKWISEVTTLLWKVQPAE 1353
Query: 862 ENQPVRWTTPLGLPVVQPY-CKNERHLIRTSLQVLALQREGNLVKIRKQRTAFPPNFVHS 920
+ WTTPLGL V QPY +NE L T + + RKQ TA PN +HS
Sbjct: 1354 LRNALCWTTPLGLVVRQPYKVRNECSLF-TPHGYSRIPGDSVAPASRKQLTAIAPNLIHS 1412
Query: 921 LDGSHMMMTAVACRDAGL 938
LD +H+ MTA+ + GL
Sbjct: 1413 LDATHLAMTALEMQHQGL 1430
>gi|68469100|ref|XP_721337.1| hypothetical protein CaO19.6499 [Candida albicans SC5314]
gi|68470125|ref|XP_720824.1| hypothetical protein CaO19.13852 [Candida albicans SC5314]
gi|77022784|ref|XP_888836.1| hypothetical protein CaO19_6499 [Candida albicans SC5314]
gi|46442714|gb|EAL02001.1| hypothetical protein CaO19.13852 [Candida albicans SC5314]
gi|46443252|gb|EAL02535.1| hypothetical protein CaO19.6499 [Candida albicans SC5314]
gi|76573649|dbj|BAE44733.1| hypothetical protein [Candida albicans]
Length = 1218
Score = 256 bits (654), Expect = 4e-65, Method: Compositional matrix adjust.
Identities = 181/583 (31%), Positives = 262/583 (44%), Gaps = 85/583 (14%)
Query: 414 KRYGVVECDPLVLEGLDRSAKHMLIPYVPMLVPPKKWKGYNKGGYLFLPSYVMRTHGSRK 473
K Y +V+ P + L + Y+PML PPK W GGYL + + + T+ S +
Sbjct: 505 KTYIIVKMHPYIELKLQSLKLGTHLHYLPMLHPPKPWVNPQSGGYLTIKTSFVSTNDSIQ 564
Query: 474 QQEALKSVTGNCMKKVFEALDTLGSTKWRVNKQVLSVLESIWVSGGNIAGLVDRNDVLIP 533
+ ++ + + LD +G+T W +N +L V + GN G + IP
Sbjct: 565 VELLNRAGVRGQLDNAYSCLDQMGNTAWAINPLMLDVFNKLM---GNPDGFLS-----IP 616
Query: 534 EKPLSEDMTEVQKWKWSVRKAKKINQERHSQRCDTELKLSVARRM-KDEEGFYYPHNLDF 592
P D T QK K E S R E+ +A ++ + Y+ ++LDF
Sbjct: 617 --PSVPDETLPQKTK----------TELKSLRITFEIMNKLANAFGENGDLLYHCYSLDF 664
Query: 593 RGRAYPMHPHLNHLSSDVCRGVLEFAEGRPLGKSGLRWLKIHLANLFSGGVEKLSHDGRL 652
RGR YP P L H D+ R + F PLG +G W+K LA+LF L
Sbjct: 665 RGRIYPFSP-LTHYGGDLARSLFMFWYSEPLGPNGFYWIKYQLASLFG-------QKNCL 716
Query: 653 AFVENHLYEIFDSAENPINGSRWWLTAEDPFQCLAACINLSEALKSSSPHSVIS----HL 708
F E + I DSA NP+ G +WW+ A+ PF LA C + + L I L
Sbjct: 717 EFYEENYDNIIDSARNPMTGKKWWMKADKPFSALAVCFEIKKILDYRMSGGKIEDYKCRL 776
Query: 709 PIHQDGSCNGLQHYAALGRNTLEAAAVNLVAGEKPADVYSEIAVRVHEIMKRDSNKDPSK 768
PIHQDGSCNGLQHYA L + AAVNL+ E DVY+ +V EI+K+ +D S+
Sbjct: 777 PIHQDGSCNGLQHYAGLAADETGGAAVNLIRSETKQDVYT----KVLEIVKKKIEQDISE 832
Query: 769 HPQALL----AKILIDQVDRKLVKQTVMTSVYGVTFVGAREQIKRRLEE--KGHITDDRQ 822
+ AK + ++RKLVK+ VMT+VYGVT GA QI + ++E + H T+ +
Sbjct: 833 QNLGTVNLETAKFFLPILNRKLVKRPVMTTVYGVTLAGASSQIMQTIKEIVEDHRTNPSK 892
Query: 823 L--------------FAAACYAAKVTLTALGEIFEAARSIMGW-LGDCAKVIASENQ--- 864
Y AK L ++ E+F A+ I W L + +++ S N
Sbjct: 893 TTFSNETLHKLKSVQLTQTSYLAKKILDSIDELFVHAKQIEKWLLQNTKRILTSYNIKTI 952
Query: 865 ----------------------PVRWTTPLGLPVVQPYCKNERHLIRTSLQVLALQREGN 902
P+ W +P GLPV+Q Y K ++
Sbjct: 953 DHLLNNNPSSFETIFTTPMSFFPMSWISPCGLPVIQAYRKIPTSRFNGAIGKTTWNNSNK 1012
Query: 903 LVKI--RKQRTAFPPNFVHSLDGSHMMMTAVACRDAGLHFAGL 943
L + RK PNF+HSLD +H+ MT + AGL F+ +
Sbjct: 1013 LSPMDRRKHELGIAPNFIHSLDAAHLFMTCDSANKAGLTFSAI 1055
>gi|157870161|ref|XP_001683631.1| putative mitochondrial DNA-directed RNA polymerase [Leishmania major
strain Friedlin]
gi|68126697|emb|CAJ04832.1| putative mitochondrial DNA-directed RNA polymerase [Leishmania major
strain Friedlin]
Length = 1509
Score = 256 bits (653), Expect = 6e-65, Method: Compositional matrix adjust.
Identities = 183/536 (34%), Positives = 267/536 (49%), Gaps = 72/536 (13%)
Query: 455 KGGYLFLPSYVMRTHGSRKQQEALKSVTGNCMKKVFEALDTLGSTKWRVNKQVLSVLESI 514
K Y LPS ++ GS Q + + +ALD + WR+NK +L V E++
Sbjct: 913 KSVYGVLPSVAVK--GSANQAMIVSQA------PMLKALDAISRVPWRINKYMLHVQEAV 964
Query: 515 --------------------WVSGGNIAGLVDRNDVLIPEKPLSEDMTEV---------- 544
++S G I DR + +D +++
Sbjct: 965 VREGFGFGKIRPGFYPLHYYYMSDGEIRYPSDRRRSALLNGNDDDDDSDLAAGDVFNLLQ 1024
Query: 545 -------QKWKWSVRKAKKINQERHSQRCDTELKLSVARRMKDEEGFYYPHNLDFRGRAY 597
QK W K++++ R S R L L AR + Y+P+++DFRGR Y
Sbjct: 1025 RRQCILQQKQDW-----KELSELR-SSRIHYLLGLRQARSIVQFSHIYFPNSMDFRGRMY 1078
Query: 598 PMHPHLNHLSSDVCRGVLEFAEGRPLGKSGLRWLKIHLANLFSGGVEKLSHDGRLAFVEN 657
P+ LNH SD RG+LE+AE +PLG GL WLK+HLAN G+ KLS D R+ +V+
Sbjct: 1079 PLPGRLNHTGSDPFRGLLEYAEPKPLGAVGLYWLKVHLANKM--GMSKLSFDERVHYVDE 1136
Query: 658 HLYEIFDSAENPINGSRWWLTAEDPFQCLAACINLSEALK-SSSPHSVISHLPIHQDGSC 716
H+ ++ SAE+P+ G RWW A +P QCL AC +++A+K S P +S LP+ DGS
Sbjct: 1137 HMEDVVQSAESPLVGDRWWQEASEPIQCLMACKEVADAMKCSQGPEKFLSRLPVAVDGSY 1196
Query: 717 NGLQHYAALGRNTLEAAAVNLVAGEKPADVYSEIAVRVHEIMKRDSNKDPSKHPQALLAK 776
NGLQHY+A+GR+ A VNLV E+PAD Y+ I + + + D+++D + L
Sbjct: 1197 NGLQHYSAIGRDAFGAKLVNLVPSERPADAYTGILKEMLKSICIDADRDHQVAQRCLGTG 1256
Query: 777 ILIDQ--VDRKLVKQTVMTSVYGVTFVGAREQIKRRL--EEKGHI----TDDRQLFAAAC 828
D+ + RK +K+ +MT VYGVT G EQI L + K H TD +++ A
Sbjct: 1257 RGQDKDHIKRKTIKRPIMTQVYGVTSYGMSEQIFDELVKQNKSHGLWTHTDMKEM---AA 1313
Query: 829 YAAKVTLTALGEIFEAARSIMGWLGDCAKVI-----ASENQPVRWTTPLGLPVVQPY-CK 882
Y L +LG F ++ W+ + ++ A + WTTPLGL V QPY +
Sbjct: 1314 YLRDKVLESLGITFRETQNCRKWISEVTTLLWKVQPAELRNALCWTTPLGLVVRQPYKVR 1373
Query: 883 NERHLIRTSLQVLALQREGNLVKIRKQRTAFPPNFVHSLDGSHMMMTAVACRDAGL 938
NE L T + + RKQ TA PN +HSLD +H+ MTA+ + GL
Sbjct: 1374 NECSLF-TPHGYSRVPGDSVAPASRKQLTAIAPNLIHSLDATHLAMTALEMQHQGL 1428
>gi|238883374|gb|EEQ47012.1| conserved hypothetical protein [Candida albicans WO-1]
Length = 1218
Score = 255 bits (651), Expect = 9e-65, Method: Compositional matrix adjust.
Identities = 180/583 (30%), Positives = 261/583 (44%), Gaps = 85/583 (14%)
Query: 414 KRYGVVECDPLVLEGLDRSAKHMLIPYVPMLVPPKKWKGYNKGGYLFLPSYVMRTHGSRK 473
K Y +V+ P + L + Y+PML PPK W GGYL + + + T+ S +
Sbjct: 505 KTYIIVKMHPYIELKLQSLKLGTHLHYLPMLHPPKPWVNPQSGGYLTIKTSFVSTNDSIQ 564
Query: 474 QQEALKSVTGNCMKKVFEALDTLGSTKWRVNKQVLSVLESIWVSGGNIAGLVDRNDVLIP 533
+ ++ + + LD +G+T W +N +L V + GN G + IP
Sbjct: 565 VELLNRAGVRGQLDNAYSCLDQMGNTAWAINPLMLDVFNKLM---GNPDGFLS-----IP 616
Query: 534 EKPLSEDMTEVQKWKWSVRKAKKINQERHSQRCDTELKLSVARRM-KDEEGFYYPHNLDF 592
P D T QK K E S R E+ +A ++ + Y+ ++LDF
Sbjct: 617 --PSVPDETLPQKTK----------TELKSLRITFEIMNKLANAFGENGDLLYHCYSLDF 664
Query: 593 RGRAYPMHPHLNHLSSDVCRGVLEFAEGRPLGKSGLRWLKIHLANLFSGGVEKLSHDGRL 652
RGR YP P L H D+ R + F PLG +G W+K LA+LF L
Sbjct: 665 RGRIYPFSP-LTHYGGDLARSLFMFWYSEPLGPNGFYWIKYQLASLFG-------QKNCL 716
Query: 653 AFVENHLYEIFDSAENPINGSRWWLTAEDPFQCLAACINLSEALKSSSPHSVIS----HL 708
F E + I DSA NP+ G +WW+ A+ PF LA C + + L I L
Sbjct: 717 EFYEENYDNIIDSARNPMTGKKWWMKADKPFSALAVCFEIKKILDYRMSGGKIEDYKCRL 776
Query: 709 PIHQDGSCNGLQHYAALGRNTLEAAAVNLVAGEKPADVYSEIAVRVHEIMKRDSNKDPSK 768
PIHQDGSCNGLQHYA L + AAVNL+ E DVY+ +V EI+K+ +D S+
Sbjct: 777 PIHQDGSCNGLQHYAGLAADETGGAAVNLIRSETKQDVYT----KVLEIVKKKIEQDISE 832
Query: 769 HPQALL----AKILIDQVDRKLVKQTVMTSVYGVTFVGAREQIKRRLEE--KGHITDDRQ 822
+ AK + ++RKLVK+ VMT+VYGVT GA QI + ++E + H T+ +
Sbjct: 833 QNLGTVNLETAKFFLPILNRKLVKRPVMTTVYGVTLAGASSQIMQTIKEIVEDHRTNPSK 892
Query: 823 L--------------FAAACYAAKVTLTALGEIFEAARSIMGW-LGDCAKVIASENQ--- 864
Y AK L ++ E+F A+ I W L + +++ S N
Sbjct: 893 TTFSNETLHKLKSVQLTQTSYLAKKILDSIDELFVHAKQIEKWLLQNTKRILTSYNIKTI 952
Query: 865 ----------------------PVRWTTPLGLPVVQPYCKNERHLIRTSLQVLALQREGN 902
P+ W +P G PV+Q Y K ++
Sbjct: 953 DHLLNNNPSSFETIFTTPVSFFPISWISPCGFPVIQSYRKILTSRFNGAIGKTTWNNSNK 1012
Query: 903 LVKI--RKQRTAFPPNFVHSLDGSHMMMTAVACRDAGLHFAGL 943
L + RK PNF+HSLD +H+ MT + AGL F+ +
Sbjct: 1013 LSPMDRRKHELGIAPNFIHSLDAAHLFMTCDSANKAGLTFSAI 1055
>gi|344170841|emb|CCA83277.1| DNA-directed RNA polymerase from phage [blood disease bacterium
R229]
Length = 795
Score = 254 bits (650), Expect = 1e-64, Method: Compositional matrix adjust.
Identities = 211/759 (27%), Positives = 351/759 (46%), Gaps = 78/759 (10%)
Query: 212 NLPHIKGLFLGWFGPLSEAIEREQKMQRTKKQKAAYAPHIELLPADKVAVIVMHKMMGLV 271
N P+ +F W P+ + IE ++AA+ + L +A I + +
Sbjct: 13 NNPYSSAVFRRWLVPVRDMIEESVAATGKPGRRAAHVMLLRSLDPAAIAFIAVRSALTHT 72
Query: 272 MAGHEDRCVQVVQAAVHIGMAIEQEIRIHSFLEKTKNYKRKKIIADTEEVLSKEKELLRK 331
++G D + IG + E+ + +F E ++ D ++ SK R
Sbjct: 73 VSGGGDNARNL---GNDIGKGVYGELVLATF-EHINPELYWEVSHDLDKRRSKSS---RH 125
Query: 332 RVNSLIKSKRVMEAQKLLKNEETKPWGRDTQAKLGSRLVELLIETAYVQ-HPVNPADYSP 390
R +L S + E E W + ++G LVEL+ E ++ V+ Y
Sbjct: 126 RYQTLRHSAQKAEI-------EVPYWSPSDRTQVGLWLVELMREVGLLEVQRVHETRYG- 177
Query: 391 PDVRPAFRHRFKTILKHPGQKTTKRY-GVVECDPLVLEGLDRSAKHMLIPY-VPMLVPPK 448
+ R + +L + +R GVVE M +P+ P + PPK
Sbjct: 178 -----KHKERLEVMLSEEAAQIVQRIRGVVE---------------MTMPFHQPCIEPPK 217
Query: 449 KWKGYNKGGYLF------LPSYV-MRTHGSRKQQEALKSVTGNCMKKVFEALDTLGSTKW 501
W N GGY LP V MR R ++ + M V +A++ L +W
Sbjct: 218 DWVSVNDGGYHTQEMRRQLPHCVNMRRQHLRTMRDQIAKAD---MTNVLDAINHLQRVRW 274
Query: 502 RVNKQVLSVLESIWVS--GGNIAGLVDRNDVLIPE----KPLSEDMTEVQ-----KWKWS 550
+VN +L V+ ++ G + G + +PE ++DMTE Q +WK +
Sbjct: 275 QVNTDILDVVLALGKGRDSGEVVGQTWEDKPAVPEWLTPGMKADDMTEAQAEQFKQWKRA 334
Query: 551 VRKAKKINQERHSQRCDTELKLSVARRMKDEEGFYYPHNLDFRGRAYPMHPHLNHLSSDV 610
+ + N+ R + A + +D ++ + DFRGR Y M ++ SD+
Sbjct: 335 MAQWHTDNKARGIKWGRFYSATQTALKYRDYPAIHFVYQADFRGRLYAMTTGVSPQGSDM 394
Query: 611 CRGVLEFAEGRPLGKS-GLRWLKIHLANLFSGGVEKLSHDGRLAFVENHLYEIFDSAENP 669
+ +L FA+G+PL + +RW KI+ AN + G++K++ + R+A+V+ H I A++P
Sbjct: 395 QKALLRFADGKPLEDTEAVRWFKINGANRY--GIDKVTFEERIAWVDAHEAMILRIADDP 452
Query: 670 INGSRWWLTAEDPFQCLAACINLSEALKSSSPHSVISHLPIHQDGSCNGLQHYAALGRNT 729
++ W + P Q LA CI + +S P + +S +P+ DGSCNGLQH++A+ R++
Sbjct: 453 VSRHDDWKEVDSPLQFLAWCIEYARWRRS--PGTFVSRIPVGFDGSCNGLQHFSAMLRDS 510
Query: 730 LEAAAVNLVAGEKPADVYSEIAVRVHEIMKRDSNKDPSKHPQALLAKILIDQVDRKLVKQ 789
+ AVNLV KP D+Y ++A V ++ + ++ + L+K L ++RKLVK+
Sbjct: 511 VGGRAVNLVPAGKPNDIYQQVADLVQRKLQAMDPETLAERDRPFLSKWLAHGMNRKLVKR 570
Query: 790 TVMTSVYGVTFVGAREQIK----RRLEEKGHITDDRQLFAAACYAAKVTLTALGEIFEAA 845
+VMT YG T E I R+ E K D + AA + + V ++GE+ AA
Sbjct: 571 SVMTLPYGSTRYSCAEFIVDDYLRKDEAKEF--DKLEYSLAANFLSYVVWESIGEVVIAA 628
Query: 846 RSIMGWLGDCA-KVIASENQPVRWTTPLGLPVVQPYCKNERHLIRTSLQVLA-----LQR 899
M WL A +I NQ + W TP G PVVQ Y E +IR +L +
Sbjct: 629 SQAMDWLQRSAHALIRGGNQQIEWVTPSGFPVVQVY--QELEIIRARSLLLGGMTVKVAT 686
Query: 900 EGNLVKIRKQRTAFPPNFVHSLDGSHMMMTAVACRDAGL 938
G +++ + PNFVHS+D +H+++T +ACRDAG+
Sbjct: 687 TGEHPSVKRHKNGMAPNFVHSMDAAHLVLTTIACRDAGV 725
>gi|398016041|ref|XP_003861209.1| mitochondrial DNA-directed RNA polymerase, putative [Leishmania
donovani]
gi|322499434|emb|CBZ34507.1| mitochondrial DNA-directed RNA polymerase, putative [Leishmania
donovani]
Length = 1510
Score = 254 bits (649), Expect = 2e-64, Method: Compositional matrix adjust.
Identities = 159/409 (38%), Positives = 225/409 (55%), Gaps = 27/409 (6%)
Query: 545 QKWKWSVRKAKKINQERHSQRCDTELKLSVARRMKDEEGFYYPHNLDFRGRAYPMHPHLN 604
QK W K++++ R S R L L AR + Y+P+++DFRGR YP+ LN
Sbjct: 1033 QKQDW-----KELSELR-SSRIHYLLGLRQARSIVQFSHIYFPNSMDFRGRMYPLPGRLN 1086
Query: 605 HLSSDVCRGVLEFAEGRPLGKSGLRWLKIHLANLFSGGVEKLSHDGRLAFVENHLYEIFD 664
H SD RG+LE+AE +PLG GL WLK+HLAN G+ KLS D R+ +V+ H+ ++
Sbjct: 1087 HTGSDPFRGLLEYAEPKPLGAVGLYWLKVHLANKM--GMSKLSFDERVHYVDEHMEDVVQ 1144
Query: 665 SAENPINGSRWWLTAEDPFQCLAACINLSEALK-SSSPHSVISHLPIHQDGSCNGLQHYA 723
SAE+P+ G RWW A +P QCL AC +++A+K S P +S LP+ DGS NGLQHY+
Sbjct: 1145 SAESPLVGDRWWQEASEPIQCLMACKEVADAMKCSQGPEKFLSRLPVAVDGSYNGLQHYS 1204
Query: 724 ALGRNTLEAAAVNLVAGEKPADVYSEIAVRVHEIMKRDSNKDPSKHPQALLAKILIDQ-- 781
A+GR+ A VNLV E+PAD Y+ I + + + D+ +D + L D+
Sbjct: 1205 AIGRDAFGAKLVNLVPSERPADAYTGILKEMLKSICIDAGRDHQVAQRCLGTGRGQDKDH 1264
Query: 782 VDRKLVKQTVMTSVYGVTFVGAREQIKRRL--EEKGHI----TDDRQLFAAACYAAKVTL 835
+ RK +K+ +MT VYGVT G EQI L + K H TD +++ A Y L
Sbjct: 1265 IKRKTIKRPIMTQVYGVTSYGMSEQIFDELVKQNKSHGLWTHTDMKEM---AAYLRDKVL 1321
Query: 836 TALGEIFEAARSIMGWLGDCAKVI-----ASENQPVRWTTPLGLPVVQPY-CKNERHLIR 889
+LG F ++ W+ + ++ A + WTTPLGL V QPY +NE L
Sbjct: 1322 ESLGITFRETQNCRKWISEVTTLLWKVQPAELRNALCWTTPLGLVVRQPYKVRNECSLF- 1380
Query: 890 TSLQVLALQREGNLVKIRKQRTAFPPNFVHSLDGSHMMMTAVACRDAGL 938
T + + RKQ TA PN +HSLD +H+ MTA+ + GL
Sbjct: 1381 TPHGYSRVPGDSVAPASRKQLTAIAPNLIHSLDATHLAMTALEMQHQGL 1429
>gi|146087926|ref|XP_001465944.1| putative mitochondrial DNA-directed RNA polymerase [Leishmania
infantum JPCM5]
gi|134070045|emb|CAM68377.1| putative mitochondrial DNA-directed RNA polymerase [Leishmania
infantum JPCM5]
Length = 1510
Score = 254 bits (648), Expect = 2e-64, Method: Compositional matrix adjust.
Identities = 159/409 (38%), Positives = 225/409 (55%), Gaps = 27/409 (6%)
Query: 545 QKWKWSVRKAKKINQERHSQRCDTELKLSVARRMKDEEGFYYPHNLDFRGRAYPMHPHLN 604
QK W K++++ R S R L L AR + Y+P+++DFRGR YP+ LN
Sbjct: 1033 QKQDW-----KELSELR-SSRIHYLLGLRQARSIVQFSHIYFPNSMDFRGRMYPLPGRLN 1086
Query: 605 HLSSDVCRGVLEFAEGRPLGKSGLRWLKIHLANLFSGGVEKLSHDGRLAFVENHLYEIFD 664
H SD RG+LE+AE +PLG GL WLK+HLAN G+ KLS D R+ +V+ H+ ++
Sbjct: 1087 HTGSDPFRGLLEYAEPKPLGAVGLYWLKVHLANKM--GMSKLSFDERVHYVDEHMEDVVQ 1144
Query: 665 SAENPINGSRWWLTAEDPFQCLAACINLSEALK-SSSPHSVISHLPIHQDGSCNGLQHYA 723
SAE+P+ G RWW A +P QCL AC +++A+K S P +S LP+ DGS NGLQHY+
Sbjct: 1145 SAESPLVGDRWWQEASEPIQCLMACKEVADAMKCSQGPEKFLSRLPVAVDGSYNGLQHYS 1204
Query: 724 ALGRNTLEAAAVNLVAGEKPADVYSEIAVRVHEIMKRDSNKDPSKHPQALLAKILIDQ-- 781
A+GR+ A VNLV E+PAD Y+ I + + + D+ +D + L D+
Sbjct: 1205 AIGRDAFGAKLVNLVPSERPADAYTGILKEMLKSICIDAGRDHQVAQRCLGTGRGQDKDH 1264
Query: 782 VDRKLVKQTVMTSVYGVTFVGAREQIKRRL--EEKGHI----TDDRQLFAAACYAAKVTL 835
+ RK +K+ +MT VYGVT G EQI L + K H TD +++ A Y L
Sbjct: 1265 IKRKTIKRPIMTQVYGVTSYGMSEQIFDELVKQNKSHGLWTHTDMKEM---AAYLRDKVL 1321
Query: 836 TALGEIFEAARSIMGWLGDCAKVI-----ASENQPVRWTTPLGLPVVQPY-CKNERHLIR 889
+LG F ++ W+ + ++ A + WTTPLGL V QPY +NE L
Sbjct: 1322 ESLGITFRETQNCRKWISEVTTLLWKVQPAELRNALCWTTPLGLVVRQPYKVRNECSLF- 1380
Query: 890 TSLQVLALQREGNLVKIRKQRTAFPPNFVHSLDGSHMMMTAVACRDAGL 938
T + + RKQ TA PN +HSLD +H+ MTA+ + GL
Sbjct: 1381 TPHGYSRVPGDSVAPASRKQLTAIAPNLIHSLDATHLAMTALEMQHQGL 1429
>gi|449669690|ref|XP_002168863.2| PREDICTED: DNA-directed RNA polymerase, mitochondrial-like [Hydra
magnipapillata]
Length = 404
Score = 252 bits (644), Expect = 5e-64, Method: Compositional matrix adjust.
Identities = 130/286 (45%), Positives = 179/286 (62%), Gaps = 13/286 (4%)
Query: 661 EIFDSAENPINGSRWWLTAEDPFQCLAACINLSEALKSSSPHSVISHLPIHQDGSCNGLQ 720
E F S N G +WW DP+Q L ACI ++ AL+S P S +++ P+H DGSCNGLQ
Sbjct: 48 ETFKSWVN--KGKQWWREGTDPWQTLVACIEITNALRSPDPSSYVTYAPVHMDGSCNGLQ 105
Query: 721 HYAALGRNTLEAAAVNLVAGEKPADVYSEIAVRVHEIMKRDSNKDPSKHPQALLAKILID 780
HYA+LG+++ A VNL +KP DVYSE+A+ V + +RD++K + LAK L
Sbjct: 106 HYASLGQDSYGARQVNLTPADKPQDVYSEVALLVEKARQRDASKGDT------LAKELDG 159
Query: 781 QVDRKLVKQTVMTSVYGVTFVGAREQIKRRLEEKGHITDDRQLFAAACYAAKVTLTALGE 840
++ RK+VKQTVMT VYGVTFVG R QI+++L+E G +++D +F A+ Y K +L E
Sbjct: 160 KITRKVVKQTVMTVVYGVTFVGGRLQIEKQLKEMG-VSNDI-IFKASVYIVKEVFKSLQE 217
Query: 841 IFEAARSIMGWLGDCAKVIASENQPVRWTTPLGLPVVQPYCKNERHLIRTSLQVLALQRE 900
+F +AR I WL + A IA V W TP+GLPVVQPY K RT +Q + +
Sbjct: 218 MFTSARQIQDWLTNSASQIALAGHCVDWVTPMGLPVVQPYHKETTERFRTKIQTVCSSHK 277
Query: 901 GNLVKI---RKQRTAFPPNFVHSLDGSHMMMTAVACRDAGLHFAGL 943
+ +I KQ+ FPPNFVHSLD +HMMMT++ C + FA +
Sbjct: 278 FDYTQIPHLTKQKGGFPPNFVHSLDSTHMMMTSLRCEQEKMTFASV 323
>gi|255731650|ref|XP_002550749.1| conserved hypothetical protein [Candida tropicalis MYA-3404]
gi|240131758|gb|EER31317.1| conserved hypothetical protein [Candida tropicalis MYA-3404]
Length = 1205
Score = 252 bits (644), Expect = 7e-64, Method: Compositional matrix adjust.
Identities = 180/580 (31%), Positives = 267/580 (46%), Gaps = 80/580 (13%)
Query: 416 YGVVECD--PLVLEGLDRSAKHMLIPYVPMLVPPKKWKGYNKGGYLFLPSYVMRTHGSRK 473
Y V D P + L+ Y+P+L PPK W GGYL + ++ T +
Sbjct: 491 YAVYTIDIHPYLESKLETFTTGTYFRYLPLLCPPKPWTNSQNGGYLNYQTRLIATTDTVH 550
Query: 474 QQEALKSVTGNCMKKVFEALDTLGSTKWRVNKQVLSVLESIWVSGGNIAGLVDRNDVLIP 533
++ K+ + + LD +G+T W +N Q+L V + ++ N G ++ +IP
Sbjct: 551 KKLLEKAGVRGQLDSAYNCLDQIGNTPWAINPQMLDVFNKV-INYPN--GFLEI-PAIIP 606
Query: 534 EKPLSEDMTEVQKWKWSVRKAKKINQERHSQRCDTELKLSVARRM-KDEEGFYYPHNLDF 592
+ L K +E + R E+ VA K+ + Y+ + LDF
Sbjct: 607 DSNL----------------PSKERRELKNLRTSIEITNKVANAFGKNGDLLYHCYMLDF 650
Query: 593 RGRAYPMHPHLNHLSSDVCRGVLEFAEGRPLGKSGLRWLKIHLANLFSGGVEKLSHDGRL 652
RGR Y P L H SD+ R + F + +PLG++G W+K LA+LF G++
Sbjct: 651 RGRVYTFSP-LTHYGSDLTRSLFLFWKSQPLGENGFYWVKYQLASLF--GIKNCEE---- 703
Query: 653 AFVENHLYEIFDSAENPINGSRWWLTAEDPFQCLAACINLSEAL----KSSSPHSVISHL 708
F E + I DSA NP++GSRWW+ A+ PF L+ C + L ++ +S L
Sbjct: 704 -FYEENKQNIIDSAMNPLDGSRWWMKADKPFCALSVCFEIKNILDFQESGNNIEDYLSRL 762
Query: 709 PIHQDGSCNGLQHYAALGRNTLEAAAVNLVA-GEKPADVYSEIAVRVHEIMKRDSNKDPS 767
PIHQDGSCNGLQHYAAL + AVNL+ G+ DVY E+ V +++D
Sbjct: 763 PIHQDGSCNGLQHYAALAADENGGRAVNLIGVGDSKQDVYIEVMKVVRGKIEKDIKDAKL 822
Query: 768 KHPQALLAKILIDQVDRKLVKQTVMTSVYGVTFVGAREQIKRRLEE--KGHITD------ 819
LAK + + RKLVK+ VMT+VYGVT GA QIK ++E H T+
Sbjct: 823 PEETIDLAKFYLKILCRKLVKRPVMTTVYGVTLAGASAQIKSTIKEILDEHRTNPEINTF 882
Query: 820 DRQLFAA--------ACYAAKVTLTALGEIFEAARSIMGWLGDCAKVIAS---------- 861
D++ A Y A+ L ++ E+F A+ I WL K I +
Sbjct: 883 DQETLARLSTFKLNHTMYLARKVLESIDELFGHAKQIETWLLQNTKRILTAYNVKLLDYV 942
Query: 862 --------EN--------QPVRWTTPLGLPVVQPYCKNERHLIRTSLQVLALQREGNLVK 905
EN P+ WT P G PV+Q Y + + + ++ L ++ L
Sbjct: 943 QEKDTKLYENIFKRSVSYTPMSWTAPSGFPVIQIYRQIKHKMSSGPMEELTIRNWNKLYP 1002
Query: 906 I--RKQRTAFPPNFVHSLDGSHMMMTAVACRDAGLHFAGL 943
+ K A PNF+HSLD SHM MT G+ F+ +
Sbjct: 1003 MDRYKHELAIAPNFIHSLDASHMFMTCEEANKQGITFSAI 1042
>gi|344229620|gb|EGV61505.1| DNA/RNA polymerase [Candida tenuis ATCC 10573]
Length = 1100
Score = 252 bits (643), Expect = 7e-64, Method: Compositional matrix adjust.
Identities = 190/632 (30%), Positives = 308/632 (48%), Gaps = 89/632 (14%)
Query: 363 AKLGSRLVELLIETAYVQHPVNPADYSPPDVRPAFRHRFKTILKHPGQKTTKRYGVVECD 422
KL S +V+LL+ VQ P + F H+ I++ P K YG + +
Sbjct: 360 VKLFSIIVKLLVGHCKVQVPQEFEGETNWFGGNLFHHQ---IIRLPKSK----YGKLSLN 412
Query: 423 PLVLEGLDRSAKHMLIP--YVPMLVPPKKWKGYNKGGYLFLPSYVMRTHGSRKQQEALKS 480
P V + S + ++PMLVPPKKW ++GGYL ++ LK
Sbjct: 413 PYVFYEMKASELQIGFDRLFLPMLVPPKKWVSPDEGGYLNNIKSIISNLNEPAYLLYLKR 472
Query: 481 V-TGNCMKKVFEALDTLGSTKWRVNKQVLSVLESIWVSGGNIAGLVDRNDVLIPEKPLSE 539
T + ++ L +GS W +++ +L V + G I G+ + D++
Sbjct: 473 ANTSGQLDFLYRNLSYMGSVPWCLDQDMLKVFNTAMEKEGGILGIPPKIDLI-------- 524
Query: 540 DMTEVQKWKWSVRKAKKINQERHSQRCDTELKLSVARRMKDEEGFYYPHNLDFRGRAYPM 599
T++ K ++S K + + + S+R L + +A KD Y PHN+DFRGR YPM
Sbjct: 525 --TKLDKSRYS----KLMYERQKSKRVKYNLIMKIANAFKDN-IMYLPHNVDFRGRVYPM 577
Query: 600 HPHLNHLSSDVCRGVLEFAEGRPLGKSGLRWLKIHLANLFSGGVEKLSHDGRLAFVENHL 659
L++ DV R +L+F + PLG +GL WLK LA L+ G +KL + R+ FV+ +
Sbjct: 578 VSVLSYQDEDVTRSLLQFWDPHPLGSNGLNWLKYQLAGLY--GKDKLPMEDRIEFVDANY 635
Query: 660 YEIFDSAENPINGSRWWLTAEDPFQCLAACINLSEALKSSSPHSVISH----LPIHQDGS 715
+ SA +P+ ++WW+ A+ P+Q L C E LK S IS +PIHQDGS
Sbjct: 636 NFVLSSARDPMQ-NKWWMEADSPWQVLRLC---KEFLKISEFSGDISEYKSRVPIHQDGS 691
Query: 716 CNGLQHYAALGRNTLEAAAVNLVAGEKPADVYSEIAVRVHEIMKR--DSNKDPSKHPQAL 773
CNGLQHYAAL +++ AVNL+ E D+Y+E+ + I+ + D+ D ++
Sbjct: 692 CNGLQHYAALSQDSGGGKAVNLIPSETRQDIYNEV---LETILTKVEDTPID------SI 742
Query: 774 LAKILIDQVDRKLVKQTVMTSVYGVTFVGAREQIKRRL------------EEKGHITDDR 821
+ KI + RK++K+ +MT VYGVT G EQ++ L E + + ++ R
Sbjct: 743 IGKI----ITRKVIKRPIMTKVYGVTPHGVIEQLQEELLSHDLSKKLNKQELEFYNSNRR 798
Query: 822 QLFAAACYAAKVTLTALGEIFEAARSIMGWL-GDCAKVIAS-----------------EN 863
++ A++ +L +F+ + WL + +V+ +
Sbjct: 799 EI---VIRIARMIALSLSNVFKNLIVVEDWLYKNTYRVMNTIRLEEVKHKHMDLVKFQNF 855
Query: 864 QPVRWTTPLGLPVVQPYCKNERHLIRTSLQVLALQR---EGNLVKIRKQRTAFPPNFVHS 920
+P+ WT+ G P++Q Y K + T LQ ++ + EG + I KQ A PNF+HS
Sbjct: 856 KPMMWTSMSGFPIIQLYNKKSTKTLSTRLQTFSVSKFDDEGK-INITKQLNAVSPNFIHS 914
Query: 921 LDGSHMMMTAVACRDAGLHFAGL--SFQSALE 950
LD H+++T C + G+ F + SF ++ E
Sbjct: 915 LDALHLLLTCAKCEEQGIPFVAVHDSFWTSTE 946
>gi|241957393|ref|XP_002421416.1| DNA-directed RNA polymerase, mitochondrial precursor, putative
[Candida dubliniensis CD36]
gi|223644760|emb|CAX40751.1| DNA-directed RNA polymerase, mitochondrial precursor, putative
[Candida dubliniensis CD36]
Length = 1211
Score = 250 bits (639), Expect = 2e-63, Method: Compositional matrix adjust.
Identities = 174/579 (30%), Positives = 260/579 (44%), Gaps = 76/579 (13%)
Query: 414 KRYGVVECDPLVLEGLDRSAKHMLIPYVPMLVPPKKWKGYNKGGYLFLPSYVMRTHGSRK 473
K Y VE P + L + Y+PML PPK W GGYL + + + T+ S +
Sbjct: 497 KTYITVEVHPYIESKLQSLKLGTHLHYLPMLHPPKPWVSPESGGYLTIKTNFVSTNDSIQ 556
Query: 474 QQEALKSVTGNCMKKVFEALDTLGSTKWRVNKQVLSVLESIWVSGGNIAGLVDRNDVLIP 533
+ ++ + + LD +G+T W +N +L + + N G + IP
Sbjct: 557 VELLNRAGVRGQLDNAYSCLDQMGNTAWAINPFMLDIFNKLMEEEPN--GFLS-----IP 609
Query: 534 EKPLSEDMTEVQKWKWSVRKAKKINQERHSQRCDTELKLSVARRM-KDEEGFYYPHNLDF 592
PL D T QK K E S R E+ +A K+ + Y+ ++LDF
Sbjct: 610 --PLVPDATLPQKTK----------TELKSLRITFEIMNKLANAFGKNGDLLYHCYSLDF 657
Query: 593 RGRAYPMHPHLNHLSSDVCRGVLEFAEGRPLGKSGLRWLKIHLANLFSGGVEKLSHDGRL 652
RGR YP P L H D+ R + F PLG +G W+K LA+LF + L
Sbjct: 658 RGRVYPFSP-LTHYGGDLARSLFMFWHSEPLGPNGFYWIKYQLASLFG-------QNNCL 709
Query: 653 AFVENHLYEIFDSAENPINGSRWWLTAEDPFQCLAACINLSEALKSSSPHSVIS----HL 708
F E + I DSA NP+ G +WW+ A+ PF LA C + + L I
Sbjct: 710 EFYEENHDNIVDSARNPMGGRKWWMKADKPFSALAVCFEIIKILDHCRSGGRIEDYKCRF 769
Query: 709 PIHQDGSCNGLQHYAALGRNTLEAAAVNLVAGEKPADVYSEIAVRVHEIMKRDSNKDPSK 768
PIHQDGSCNGLQHYA L + AAVNL+ E DVY+++ V + +++D + +
Sbjct: 770 PIHQDGSCNGLQHYAGLAADETGGAAVNLIRSETKQDVYTKVLEIVKKKIEQDVVEQNLE 829
Query: 769 HPQALLAKILIDQVDRKLVKQTVMTSVYGVTFVGAREQIKRRLEE--KGHITDDRQL--- 823
+ A+ + ++RKLVK+ VMT+VYGVT GA QI + ++E + H T+ +
Sbjct: 830 IDKLETAEFFLPILNRKLVKRPVMTTVYGVTLAGASSQILQTIKEIVEDHRTNPSKTTFS 889
Query: 824 -----------FAAACYAAKVTLTALGEIFEAARSIMGW-LGDCAKVIASENQ------- 864
+ Y A+ L ++ E+F A+ I W L + +++ S N
Sbjct: 890 NETLHKLKSVQLSQTSYLARKILDSIDELFVHAKQIEKWLLQNTKRILTSYNIKTIDHLL 949
Query: 865 ------------------PVRWTTPLGLPVVQPYCKNERHLIRTSLQVLALQREGNLVKI 906
P+ W +P G PV+Q Y K ++ L +
Sbjct: 950 ANNSSLFESIFTTPVSFFPMSWISPCGFPVIQAYRKIPTIRFHGAIGKTTWNNSSKLSPM 1009
Query: 907 --RKQRTAFPPNFVHSLDGSHMMMTAVACRDAGLHFAGL 943
RK PNF+HSLD +H+ MT + AGL F+ +
Sbjct: 1010 DRRKHELGIAPNFIHSLDAAHLFMTCDSANKAGLTFSAI 1048
>gi|357516853|ref|XP_003628715.1| DNA-directed RNA polymerase [Medicago truncatula]
gi|355522737|gb|AET03191.1| DNA-directed RNA polymerase [Medicago truncatula]
Length = 251
Score = 250 bits (639), Expect = 2e-63, Method: Compositional matrix adjust.
Identities = 114/222 (51%), Positives = 166/222 (74%), Gaps = 2/222 (0%)
Query: 310 KRKKIIADTEEVLSKEKELLRKRVNSLIKSKRVMEAQKLLKN-EETKPWGRDTQAKLGSR 368
K + + A+ E L+KE++ LR +V SLIK ++ +A ++K ++ KPWG++ Q K+GSR
Sbjct: 24 KGENLTAEENEKLAKEEKRLRNKVASLIKKQKKQQALGIVKGRDQAKPWGQEAQVKVGSR 83
Query: 369 LVELLIETAYVQHPVNPADYSPPDVRPAFRHRFKTILKHPGQKTTKRYGVVECDPLVLEG 428
L++LLIETAY++ P N PD+ PAF+H KTI + ++RYGV+ECDP++ +G
Sbjct: 84 LIQLLIETAYLEPPANKFGDGGPDIFPAFKHTLKTI-SNDSNNGSRRYGVIECDPMIQKG 142
Query: 429 LDRSAKHMLIPYVPMLVPPKKWKGYNKGGYLFLPSYVMRTHGSRKQQEALKSVTGNCMKK 488
L+++A++M+IPY+PMLVPP W GY+KG YLFLPSYVMR HG+++Q++ALK N +
Sbjct: 143 LEKTARNMVIPYMPMLVPPNNWIGYDKGAYLFLPSYVMRIHGAKQQRDALKWAPKNQLDS 202
Query: 489 VFEALDTLGSTKWRVNKQVLSVLESIWVSGGNIAGLVDRNDV 530
+FEAL+TLG+TKWRVNK VL V++ IW +GG +A LVDR+DV
Sbjct: 203 IFEALNTLGNTKWRVNKSVLGVIDQIWANGGRVADLVDRDDV 244
>gi|422935529|ref|YP_007005430.1| RNA polymerase, partial [Erwinia phage vB_EamP-L1]
gi|339507913|gb|AEJ81474.1| RNA polymerase [Erwinia phage vB_EamP-L1]
Length = 900
Score = 250 bits (638), Expect = 3e-63, Method: Compositional matrix adjust.
Identities = 209/734 (28%), Positives = 350/734 (47%), Gaps = 101/734 (13%)
Query: 254 LPADKVAVIVMHKMMGLVMAGHEDRCVQVVQAAVHIGMAIEQEIRIHSFLEKTKNYKRKK 313
L A+ A I + L + +C V Q A +IGM IE E+R ++ + + +++
Sbjct: 125 LSAESAAAITLK--CALATLAKDVQC-PVTQVANNIGMTIEDELRFGRIRDQEQKFYKER 181
Query: 314 IIADTEEVLSKEKELLRKRVNSLIKSKRVMEAQKLLKNEET-KPWGRDTQAKLGSRLVEL 372
+ E+ L++ K + K+ + +++E + +LK E+T W + G R++EL
Sbjct: 182 V----EKALNQRKGQVYKKAFMQVIEGKMLE-KGILKPEDTWTRWTKGETINTGIRMLEL 236
Query: 373 LIE-TAYVQHPVNPADYSPPDVRPAFRHRFKTILKHPGQKTTKRYGVVECDPLVLEGLDR 431
LIE T V+ A + DV + K +KR G L G+
Sbjct: 237 LIESTGLVELERLHAGNAAKDVETV------RLTKEYADALSKRAGA-------LAGIAP 283
Query: 432 SAKHMLIPYVPMLVPPKKWKGYNKGGYLFL---PSYVMRTHGSRKQQEALKSVTGNCMKK 488
Y P +VPPK W GGY P ++RT + AL+ M +
Sbjct: 284 M-------YQPCVVPPKPWTEAVGGGYWAAGRKPLQLVRT----RSLAALRRYEEVSMPE 332
Query: 489 VFEALDTLGSTKWRVNKQVLSVLESI--W--VSGGNIAGLVDRNDVLIPEKPLSEDMTEV 544
V +A++ +T WRVNK+VL V +I W ++ + DR + +P +PL D E+
Sbjct: 333 VIKAVNIAQNTAWRVNKKVLDVANAITQWQHCPVADVPAM-DRGE--MPARPLDIDTNEI 389
Query: 545 --QKWKWSVRKAKKINQERHSQRCDTELKLSVARRMKDEEGFYYPHNLDFRGRAYPMHPH 602
+ WK + ++ R S+R E LS A + + + ++P N+D+RGR Y + P
Sbjct: 390 ALKAWKKEASAFYRKDKARVSRRLSMEFMLSQANKFANYKAIWFPQNMDWRGRVYAV-PM 448
Query: 603 LNHLSSDVCRGVLEFAEGRPLGKSGLRWLKIHLANLFSGGVEKLSHDGRLAFVENHLYEI 662
N +D+ +G+L FA+G+P+G+ G WLKIH AN + GV+K+ R+ FVE++ I
Sbjct: 449 FNPQGNDMTKGLLTFAQGKPIGEDGFYWLKIHGAN--TAGVDKVPFPQRIKFVEDNHTNI 506
Query: 663 FDSAENPINGSRWWLTAEDPFQCLAACINLSEALKSSSPHSVISHLPIHQDGSCNGLQHY 722
+ A+ P+ + WW + PF LA C + + ++ LP+ DGSC+G+QH+
Sbjct: 507 MECAKAPLENT-WWAEQDSPFCFLAFCFEYAGVINHGLSYNC--SLPLAFDGSCSGIQHF 563
Query: 723 AALGRNTLEAAAVNLVAGEKPADVYSEIAVRVHEIMKRD------------SNK------ 764
+A+ R+ + AVNL+ + D+Y ++ +V+E++K+D ++K
Sbjct: 564 SAMLRDEIGGKAVNLLPSAEVQDIYRIVSDKVNEVLKQDLINGTSTTLETVTDKKTGEIT 623
Query: 765 DPSKHPQALLAKILIDQ-VDRKLVKQTVMTSVYGVTFVGAREQIKRRLEEKGHITDDRQL 823
+ +K+ ++A+ ++ V+R + K++VMT YG G R+Q+ + +
Sbjct: 624 ERTKYGTKVMAQWWLEHGVNRGVTKRSVMTLAYGSKEFGFRDQVLSDTIQPAIDNGKGDM 683
Query: 824 F----AAACYAAKVTLTALGEIFEAARSIMGWLGDCAKVIASENQ------------PVR 867
F AA Y AK+ A+ AA M WL AK++A+E + V
Sbjct: 684 FLNPNQAAGYMAKLIWNAVSVTVVAAVEAMNWLKSAAKLLAAEVKDKKTDTVLRGRCAVH 743
Query: 868 WTTPLGLPVVQPYCKNERHLIRTSLQVLALQR----------EGNLVKIRKQRTAFPPNF 917
W TP G PV Q Y R ++T L ++ L + + + + KQ + PNF
Sbjct: 744 WVTPDGFPVWQEY----RVPVQTRLNLMFLGQFRIQPTINTHKTSGIDAHKQESGIAPNF 799
Query: 918 VHSLDGSHMMMTAV 931
VHS DGSH+ T V
Sbjct: 800 VHSQDGSHLRKTVV 813
>gi|281416282|ref|YP_003347522.1| T3/T7-like RNA polymerase [Klebsiella phage KP32]
gi|262410401|gb|ACY66666.1| T3/T7-like RNA polymerase [Klebsiella phage KP32]
Length = 906
Score = 249 bits (635), Expect = 7e-63, Method: Compositional matrix adjust.
Identities = 229/836 (27%), Positives = 385/836 (46%), Gaps = 130/836 (15%)
Query: 178 LRRRQVKQETEAWERMVDEY-KELEAKMIEKRLAPNLPHIKGLFLGWFGPLSEAIE---R 233
L R Q+ E EA+E + K LE ++ A N+ K L L L++ I+
Sbjct: 32 LAREQLALEHEAYELGEQRFLKMLERQVKAGEFADNVA-AKPLVLTLHPQLTKRIDDWKE 90
Query: 234 EQKMQRTKKQKAAY------APHIEL------------LPADKVAVIVMHKMMGLVMAGH 275
EQ R KK +A Y A + L + ++ +A++ + ++G +
Sbjct: 91 EQANARGKKPRAYYPIKHGVASELALSMGAEVLNEKRGVSSEAIALLTIKVVLGTLTDAS 150
Query: 276 EDRCVQVVQAAVHIGMAIEQEIRIHSFLEKTKNYKRKKIIADTEEVLSKEKELLRKRVNS 335
+ + Q + +G A+E E R E+ Y +K + + L KRV
Sbjct: 151 K---ATIQQVSSQLGKALEDEARFGRIREQEATYFKKNV-----------ADQLDKRVGH 196
Query: 336 LIKSK--RVMEA----QKLLKNEETKPWGRDTQAKLGSRLVELLIE-TAYVQHPVNPADY 388
+ K +V+EA + +L + W D Q +G++L+ELLIE T V+ N
Sbjct: 197 VYKKAFMQVVEADMISKGMLGGDNWSSWKTDEQMHVGTKLLELLIEGTGLVEMTKNKMAD 256
Query: 389 SPPDVRPAFRHRFKTILKHPGQKTTKRYGVVECDPLVLEGLDRSAKHM--LIP-YVPMLV 445
DV +V+ P +E L + A + + P Y P +V
Sbjct: 257 GSDDV--------------------TSMQMVQLAPAFVELLSKRAGALAGISPMYQPCVV 296
Query: 446 PPKKWKGYNKGGYLFL---PSYVMRTHGSRKQQEALKSVTGNCMKKVFEALDTLGSTKWR 502
PPK W GGY + P ++RTH + AL+ M +V++A++ +T W+
Sbjct: 297 PPKPWVETVGGGYWSVGRRPLALVRTHSKK----ALRRYADVHMPEVYKAVNLAQNTPWK 352
Query: 503 VNKQVLSVLESI--W--VSGGNIAGLVDRNDVLIPEKPLSEDMTEVQKWKWSVRKAK--K 556
VNK+VL+V+ I W G++ ++R + +P +P D EV + W A +
Sbjct: 353 VNKKVLAVVNEIINWKHCPVGDVPA-IEREE--LPPRPDDIDTNEVARKAWRKEAAAVYR 409
Query: 557 INQERHSQRCDTELKLSVARRMKDEEGFYYPHNLDFRGRAYPMHPHLNHLSSDVCRGVLE 616
++ R S+R E ++ A + + + ++P+N+D+RGR Y + N +D+ +G+L
Sbjct: 410 KDKARQSRRLSMEFMVAQANKFANHKAIWFPYNMDWRGRVYAV-SMFNPQGNDMTKGMLT 468
Query: 617 FAEGRPLGKSGLRWLKIHLANLFSGGVEKLSHDGRLAFVENHLYEIFDSAENPINGSRWW 676
A+G+P+G G WLKIH AN GV+K+ R+ F+E + I SA +P+N + WW
Sbjct: 469 LAKGKPIGLDGFYWLKIHGAN--CAGVDKVPFPERIKFIEENEGNILASAADPLNNT-WW 525
Query: 677 LTAEDPFQCLAACINLSEALKSSSPHSVISHLPIHQDGSCNGLQHYAALGRNTLEAAAVN 736
T + PF LA C + ++ LP+ DGSC+G+QH++A+ R+++ AVN
Sbjct: 526 TTQDSPFCFLAFCFEYAGVKHHGLNYNC--SLPLAFDGSCSGIQHFSAMLRDSIGGRAVN 583
Query: 737 LVAGEKPADVYSEIAVRVHEIM------------KRDSNKDPSKHPQ-------ALLAKI 777
L+ + D+Y +A +V+E++ ++ ++K+ + + L A+
Sbjct: 584 LLPSDTVQDIYKIVADKVNEVLHQHAVNGSQTVVEQIADKETGEFREKVTLGESVLAAQW 643
Query: 778 LIDQVDRKLVKQTVMTSVYGVTFVGAREQIKRRLEEKGHITDDRQLFA----AACYAAKV 833
L V RK+ K++VMT YG G R+Q+ + + +F AA Y AK+
Sbjct: 644 LQYGVTRKVTKRSVMTLAYGSKEFGFRQQVLEDTIQPAIDNGEGLMFTHPNQAAGYMAKL 703
Query: 834 TLTALGEIFEAARSIMGWLGDCAKVIASENQ------------PVRWTTPLGLPVVQPYC 881
A+ AA M WL AK++A+E + + W TP G PV Q Y
Sbjct: 704 IWDAVTVTVVAAVEAMNWLKSAAKLLAAEVKDKKTKEVLRKRCAIHWVTPDGFPVWQEYR 763
Query: 882 KNER------HLIRTSLQVLALQREGNLVKIRKQRTAFPPNFVHSLDGSHMMMTAV 931
K + L + ++++ + + + KQ + PNFVHS DGSH+ MT V
Sbjct: 764 KQNQARLKLVFLGQANVKMTYNTGKDSEIDAHKQESGIAPNFVHSQDGSHLRMTVV 819
>gi|1236334|gb|AAB01079.1| T3/T7-like RNA polymerase, partial [Oryza sativa Japonica Group]
Length = 167
Score = 248 bits (632), Expect = 1e-62, Method: Compositional matrix adjust.
Identities = 108/157 (68%), Positives = 138/157 (87%)
Query: 787 VKQTVMTSVYGVTFVGAREQIKRRLEEKGHITDDRQLFAAACYAAKVTLTALGEIFEAAR 846
VKQTVMTSVYGVT++GAR+QI +RL+EKG ITDD+ L+ +CYA +VTL ALG++F++AR
Sbjct: 1 VKQTVMTSVYGVTYIGARQQITKRLQEKGLITDDKLLYEVSCYATRVTLDALGQMFQSAR 60
Query: 847 SIMGWLGDCAKVIASENQPVRWTTPLGLPVVQPYCKNERHLIRTSLQVLALQREGNLVKI 906
IM WLGDCAK+IASEN PV+WT+P+GLPVVQPY K + ++IRTSLQ LAL+REG+ + +
Sbjct: 61 GIMAWLGDCAKMIASENHPVKWTSPVGLPVVQPYKKYKNYMIRTSLQCLALRREGDAIAL 120
Query: 907 RKQRTAFPPNFVHSLDGSHMMMTAVACRDAGLHFAGL 943
++Q+ AFPPNFVHSLD SHMMMTA+AC+ AGLHFAG+
Sbjct: 121 QRQKAAFPPNFVHSLDSSHMMMTAIACKKAGLHFAGV 157
>gi|338826814|ref|YP_004678728.1| RNA polymerase [Enterobacteria phage K30]
gi|335335277|gb|AEH41021.1| RNA polymerase [Enterobacteria phage K30]
Length = 906
Score = 247 bits (630), Expect = 3e-62, Method: Compositional matrix adjust.
Identities = 228/836 (27%), Positives = 385/836 (46%), Gaps = 130/836 (15%)
Query: 178 LRRRQVKQETEAWERMVDEY-KELEAKMIEKRLAPNLPHIKGLFLGWFGPLSEAIE---R 233
L R Q+ E EA+E + K LE ++ A N+ K L L L++ I+
Sbjct: 32 LAREQLALEHEAYELGEQRFLKMLERQVKAGEFADNVA-AKPLVLTLHPQLTKRIDDWKE 90
Query: 234 EQKMQRTKKQKAAY------APHIEL------------LPADKVAVIVMHKMMGLVMAGH 275
EQ R KK +A Y A + L + ++ +A++ + ++G +
Sbjct: 91 EQANARGKKPRAYYPIKHGVASELALSMGAEVLNEKRGVSSEAIALLTIKVVLGTLTDAS 150
Query: 276 EDRCVQVVQAAVHIGMAIEQEIRIHSFLEKTKNYKRKKIIADTEEVLSKEKELLRKRVNS 335
+ + Q + +G A+E E R E+ +Y +K + + L KRV
Sbjct: 151 K---ATIQQVSSQLGKALEDEARFGRIREQEASYFKKNV-----------ADQLDKRVGH 196
Query: 336 LIKSK--RVMEA----QKLLKNEETKPWGRDTQAKLGSRLVELLIE-TAYVQHPVNPADY 388
+ K +V+EA + +L + W D Q +G++L+ELLIE T V+ N
Sbjct: 197 VYKKAFMQVVEADMISKGMLGGDNWSSWKTDEQMHVGTKLLELLIEGTGLVEMTKNKMAD 256
Query: 389 SPPDVRPAFRHRFKTILKHPGQKTTKRYGVVECDPLVLEGLDRSAKHM--LIP-YVPMLV 445
DV +V+ P +E L + A + + P Y P +V
Sbjct: 257 GSDDV--------------------TSMQMVQLAPAFVELLSKRAGALAGISPMYQPCVV 296
Query: 446 PPKKWKGYNKGGYLFL---PSYVMRTHGSRKQQEALKSVTGNCMKKVFEALDTLGSTKWR 502
PPK W GGY + P ++RTH + AL+ M +V++A++ +T W+
Sbjct: 297 PPKPWVETVGGGYWSVGRRPLALVRTHSKK----ALRRYEDVHMPEVYKAVNLAQNTPWK 352
Query: 503 VNKQVLSVLESI--W--VSGGNIAGLVDRNDVLIPEKPLSEDMTEVQKWKWSVRKAK--K 556
VNK+VL+V+ I W G++ ++R + +P +P D EV + W A +
Sbjct: 353 VNKKVLAVVNEIINWKHCPVGDVPA-IEREE--LPPRPDDIDTNEVARKAWRKEAAAVYR 409
Query: 557 INQERHSQRCDTELKLSVARRMKDEEGFYYPHNLDFRGRAYPMHPHLNHLSSDVCRGVLE 616
++ R S+R E ++ A + + + ++P+N+D+RGR Y + N +D+ +G+L
Sbjct: 410 KDKARQSRRLSMEFMVAQANKFANHKAIWFPYNMDWRGRVYAV-SMFNPQGNDMTKGMLT 468
Query: 617 FAEGRPLGKSGLRWLKIHLANLFSGGVEKLSHDGRLAFVENHLYEIFDSAENPINGSRWW 676
A+G+P+G G WLKIH AN GV+K+ R+ F+E + I SA +P+N + WW
Sbjct: 469 LAKGKPIGLDGFYWLKIHGAN--CAGVDKVPFPERIKFIEENEANILASAADPLNNT-WW 525
Query: 677 LTAEDPFQCLAACINLSEALKSSSPHSVISHLPIHQDGSCNGLQHYAALGRNTLEAAAVN 736
+ PF LA C + ++ LP+ DGSC+G+QH++A+ R+++ AVN
Sbjct: 526 TQQDSPFCFLAFCFEYAGVKHHGLNYNC--SLPLAFDGSCSGIQHFSAMLRDSIGGRAVN 583
Query: 737 LVAGEKPADVYSEIAVRVHEIM------------KRDSNKDPSKHPQ-------ALLAKI 777
L+ + D+Y +A +V+E++ ++ ++K+ + + L A+
Sbjct: 584 LLPSDTVQDIYKIVADKVNEVLHQHVINGSQTVVEQIADKETGEFREKVMLGESVLAAQW 643
Query: 778 LIDQVDRKLVKQTVMTSVYGVTFVGAREQIKRRLEEKGHITDDRQLFA----AACYAAKV 833
L V RK+ K++VMT YG G R+Q+ + + +F AA Y AK+
Sbjct: 644 LQYGVTRKVTKRSVMTLAYGSKEFGFRQQVLEDTIQPAIDNGEGLMFTHPNQAAGYMAKL 703
Query: 834 TLTALGEIFEAARSIMGWLGDCAKVIASENQ------------PVRWTTPLGLPVVQPYC 881
A+ AA M WL AK++A+E + + W TP G PV Q Y
Sbjct: 704 IWDAVTVTVVAAVEAMNWLKSAAKLLAAEVKDKKTKEVLRKRCAIHWVTPDGFPVWQEYR 763
Query: 882 KNER------HLIRTSLQVLALQREGNLVKIRKQRTAFPPNFVHSLDGSHMMMTAV 931
K + L + ++++ + + + KQ + PNFVHS DGSH+ MT V
Sbjct: 764 KQNQARLKLVFLGQANVKMTYNTGKDSEIDAHKQESGIAPNFVHSQDGSHLRMTVV 819
>gi|255585837|ref|XP_002533596.1| conserved hypothetical protein [Ricinus communis]
gi|223526525|gb|EEF28787.1| conserved hypothetical protein [Ricinus communis]
Length = 395
Score = 245 bits (626), Expect = 7e-62, Method: Compositional matrix adjust.
Identities = 123/241 (51%), Positives = 169/241 (70%), Gaps = 4/241 (1%)
Query: 168 REMKKRKFNLLRRRQVKQETEAWERMVDEYKELEAKMIEKRLAPNLPHIKGLFLGWFGPL 227
R M +K+ +L++RQVK ETEAWE V EYKEL M EK+LAPNLP++K LFLGWF P
Sbjct: 150 RGMGSKKYQMLKKRQVKIETEAWEWAVKEYKELLMDMCEKKLAPNLPYMKSLFLGWFEPF 209
Query: 228 SEAIEREQKMQRTKKQKAAYAPHIELLPADKVAVIVMHKMMGLVMAGHEDRCVQVVQAAV 287
+AI +EQ++ R K + A+AP+ + LPAD +AVI MHK++ LVM G E C +VV AA
Sbjct: 210 RDAILKEQELIRVGKNRTAFAPYFDQLPADMMAVITMHKLVALVMTGGEHGCARVVAAAC 269
Query: 288 HIGMAIEQEIRIHSFLEKTK---NYKRKKIIADTEEVLSKEKELLRKRVNSLIKSKRVME 344
IG AIEQE+RIH FLEKTK + KK D KE+E LRK+V LIK +++
Sbjct: 270 LIGAAIEQEVRIHKFLEKTKKRNSNDSKKNEEDESNGAVKEQEKLRKKVTDLIKKQKLPA 329
Query: 345 AQKLLK-NEETKPWGRDTQAKLGSRLVELLIETAYVQHPVNPADYSPPDVRPAFRHRFKT 403
++++K +++++ W +DT+AK+GSRL+ELLI+TAY+Q P + PPD+RPAF H F+
Sbjct: 330 VRQIVKGHDDSQSWTQDTKAKVGSRLIELLIQTAYIQPPADQLADGPPDIRPAFAHTFRN 389
Query: 404 I 404
+
Sbjct: 390 V 390
>gi|326536914|ref|YP_004306321.1| RNA polymerase [Pseudomonas phage phiIBB-PF7A]
gi|318054490|gb|ADV35666.1| RNA polymerase [Pseudomonas phage phiIBB-PF7A]
Length = 891
Score = 245 bits (626), Expect = 7e-62, Method: Compositional matrix adjust.
Identities = 211/782 (26%), Positives = 358/782 (45%), Gaps = 125/782 (15%)
Query: 234 EQKMQRTKKQKAAYAPHIELLPADKVAVIVMHKMMGLVMAGHEDRCVQVVQAAVHIGMAI 293
E +M + +++ A ++ ++ ++VA + + ++ + +D +V IG I
Sbjct: 89 EHQMTKVRRKSVAL-KYLNMVRPERVAALTIKLVITEMARQRQD----LVSVTTRIGRTI 143
Query: 294 EQEIRIHSFLEKTKNYKRKKIIADTEEVLSKEKELLRKRVNSLIKSKRVMEAQKLLKNEE 353
E+E R ++ + +K I ++ L+K K+ +++EA +L N
Sbjct: 144 EEEARFGRIRDEEAKHFQKHI----KDALNKRNGHTYKKAFMEAVESKMLEAGEL--NGA 197
Query: 354 TKPWGR---DTQAKLGSRLVELLIE-TAYVQHPVNPADYSPPDVRPAFRHRFKTILKHPG 409
W D +G+R +E+LI+ TA V+ + K+ G
Sbjct: 198 WADWANSDSDVMHHIGARCLEILIKSTALVE----------------------IVRKNAG 235
Query: 410 QKTTKRYGVVECDPLVLEGLDRSAKHML-IPYV--PMLVPPKKWKGYNKGGYLF---LPS 463
K + VV+ LE L + A + I + PM+VPP+ W GGY P+
Sbjct: 236 TKDDQ--NVVQLSGPWLEQLSKRAFSLAGINTINQPMVVPPRPWTRPVGGGYWGKGRRPT 293
Query: 464 YVMRTHGSRKQQEALKSVTGNCMKKVFEALDTLGSTKWRVNKQVLSVLESI--W----VS 517
+ +RTH ++ E + V M +V++A++ +T W +NK VL+V E++ W V
Sbjct: 294 HFIRTH-TKASLERYRDVD---MAEVYKAVNIAQNTAWAINKPVLAVAEALLAWPNVPVK 349
Query: 518 GGNIAGLVDRNDVLIPEKP--LSEDMTEVQKWKWSVRKAKKINQERHSQRCDTELKLSVA 575
A + + +P KP + E+ ++ WK + R S+R E+ + A
Sbjct: 350 KWPSAAVSE-----LPTKPDDIDENPESLKAWKKEAAGVYRGEAARISRRLSLEMNVETA 404
Query: 576 RRMKDEEGFYYPHNLDFRGRAYPMHPHLNHLSSDVCRGVLEFAEGRPLGKSGLRWLKIHL 635
R+ D E Y+PHNLD+RGR Y + + +D+ +G+L+ ++G P+G G+ WL IH
Sbjct: 405 RKFADYEAIYFPHNLDWRGRVYSL-TSFSPQGNDITKGILQASKGEPVGAEGIEWLMIHG 463
Query: 636 ANLFSGGVEKLSHDGRLAFVENHLYEIFDSAENPINGSRWWLTAEDPFQCLAACINLSEA 695
AN + GV+K+ D R +V ++ I A +P+ + W ++ + PF LA C +
Sbjct: 464 AN--TAGVDKVPFDERKQWVRDNEDCILRCARDPLQNTEW-MSMDSPFCFLAFCFEWAGV 520
Query: 696 LKSSSPHSVISHLPIHQDGSCNGLQHYAALGRNTLEAAAVNLVAGEKPADVYSEIAVRVH 755
+ H +S LPI DGSC+G+QH++A+ R+ + AVNL+ D+Y ++ V+
Sbjct: 521 KRDGENH--VSALPIAFDGSCSGIQHFSAMLRDEVGGRAVNLLPSPTVQDIYRLVSDGVN 578
Query: 756 EIMKRDSNKDPSKHPQALLAK-------------------ILIDQVDRKLVKQTVMTSVY 796
I++ D + + ++ K L VDR + K++VMT Y
Sbjct: 579 NILRDDVDNGTDDSSETIVDKKTGEIRERRIIGTRTLAAMWLAYGVDRSVTKRSVMTLAY 638
Query: 797 GVTFVGAREQIKRRLEE------KGHITDDRQLFAAACYAAKVTLTALGEIFEAARSIMG 850
G G +Q++ + + K TD +Q A+ Y A + ++G+ AA M
Sbjct: 639 GSKEFGFCDQVRDDIVQPAIDAGKTMFTDAQQ---ASRYMAHLIWVSVGKTVVAAVEAMS 695
Query: 851 WLGDCAKVIASENQ--------------------PVRWTTPLGLPVVQPYCKNER----- 885
WL AK+++SE + PV W TP G PV Q Y ++
Sbjct: 696 WLQTSAKLLSSEVKAKKDDPTKDVKKGDILKPAMPVYWVTPDGFPVWQEYKVADKVRVDL 755
Query: 886 ---HLIRTSLQVLALQREGNLVKIRKQRTAFPPNFVHSLDGSHMMMTAVACRDA-GLHFA 941
+R VL R N + RKQ + PNFVHSLDGSH+ MT V + G++F
Sbjct: 756 IFMGDVRLQTTVLQTDRGDNKIDARKQESGISPNFVHSLDGSHLRMTVVKGHEGYGINFF 815
Query: 942 GL 943
L
Sbjct: 816 AL 817
>gi|282857708|ref|ZP_06266917.1| DNA-directed RNA polymerase [Pyramidobacter piscolens W5455]
gi|282584378|gb|EFB89737.1| DNA-directed RNA polymerase [Pyramidobacter piscolens W5455]
Length = 868
Score = 245 bits (625), Expect = 1e-61, Method: Compositional matrix adjust.
Identities = 166/540 (30%), Positives = 262/540 (48%), Gaps = 58/540 (10%)
Query: 440 YVPMLVPPKKWKGYNKGGYLF-----LPSYVMRTHGSRKQQEALKSVTGNCMKKVFEALD 494
Y+P+ +PP+ W GGY LP +++ Q+E L VFEA++
Sbjct: 259 YLPLPIPPRHWTNTQNGGYWTVYGGQLP--LVKNRNEAYQEEILNQPEQ--FATVFEAVN 314
Query: 495 TLGSTKWRVNKQVLSVLESIWVSGGNIAGLVDRNDVLIPEKP-LSEDMTE---------- 543
T WR+N++V +VL + G +AGL + + +P P + E
Sbjct: 315 AAQDTAWRINQRVYTVLTELVHEGKAVAGLPSADKLPLPNCPKCGAKIVEGVKHECLQSP 374
Query: 544 --VQKWKWSVRKAKKINQERHSQRCDTELKLSVARRMKDEEGFYYPHNLDFRGRAYPMHP 601
+ WK R + N + QR + + +A + ++E FYY + DFRGR YP+
Sbjct: 375 EVLDSWKGLARAVYRKNAKAIGQRLRLGMSMEIAALLLNDERFYYVYQTDFRGRLYPVG- 433
Query: 602 HLNHLSSDVCRGVLEFAEGRPLGKSGLRWLKIHLANLFSGGVEKLSHDGRLAFVENHLYE 661
+L +D +G+LEFA+G PLG G +WL +H+AN + G +K+ +D R+ + +++
Sbjct: 434 NLTPQGTDWEKGILEFADGVPLGAHGAKWLAVHVANCW--GNDKVDYDERVQWAKDNTQW 491
Query: 662 IFDSAENPINGSRWWLTAEDPFQCLAACINLSEALKSSSPHSVISHLPIHQDGSCNGLQH 721
I D A P+ R W A+ PF LAACI + + +SH P+ DGSC+G+QH
Sbjct: 492 IRDCANEPLI-HREWTEADSPFMFLAACIEWDGYCREGDGY--LSHTPVGLDGSCSGIQH 548
Query: 722 YAALGRNTLEAAAVN---LVAGEKPADVYSEIAVRVHEIMKRDS---NKDPSKHPQALLA 775
Y+A+ R+ + A A N L K +D+Y +A + + D+ + D +K+ LLA
Sbjct: 549 YSAMLRDEVGAIATNVKCLPNQHKKSDIYGLVAEEAVKQFREDATGADADKAKYAMFLLA 608
Query: 776 KILIDQVDRKLVKQTVMTSVYGVTFVGAREQIKRRLEEKGHIT--DDRQLFAAACYAAKV 833
L+D RK+ K+ VMT YG TF ARE + L E+ I D +++ + YAA
Sbjct: 609 HNLMD---RKITKRAVMTLPYGSTFQTAREYVCEALSERTEIEQYDTKEVKSLLMYAATT 665
Query: 834 TLTALGEIFEAARSIMGWLGDCAKVIASENQPVRWTTPLGLPVVQPYCKNERHLIRTSLQ 893
A+ ++ + AR M +L A ++A + PV W P G V Q Y + I+T LQ
Sbjct: 666 VWHAIPKVVKGAREGMKFLKTVANLVAKASTPVAWVAPSGFVVQQSYYLTDMKRIKTRLQ 725
Query: 894 -------------------VLALQREGNLVKIRKQRTAFPPNFVHSLDGSHMMMTAVACR 934
+L + + KQ + PNF+HSLD SH+M + A +
Sbjct: 726 GSIIVKNKMPCWVASGGAVLLKDSHDSPYINKAKQVSGIAPNFIHSLDASHLMFSVCAAK 785
>gi|441463322|gb|AGC35603.1| putative DNA-dependent RNA polymerase protein [Rhizobium phage
RHEph02]
gi|441463383|gb|AGC35663.1| putative DNA-dependent RNA polymerase protein [Rhizobium phage
RHEph03]
Length = 812
Score = 244 bits (624), Expect = 1e-61, Method: Compositional matrix adjust.
Identities = 214/782 (27%), Positives = 352/782 (45%), Gaps = 81/782 (10%)
Query: 191 ERMVDEYKELEAKMIEKRLAPNLPHIKGLFLGWFGPLSEAIEREQKMQRTKKQKAAYAPH 250
+R ++ Y++ + ++ + L + PL+EA+E ++ A H
Sbjct: 3 QRGIEAYRKAKEAALDGGRGSETGFARRLMDEYIQPLTEALEAAIVPRKGPGYAARAHVH 62
Query: 251 IELLPADKVAVIVMHKMMGLVMAGHEDRCVQVVQAAVHIGMAIEQEIRIHSFLEKTKNYK 310
+ + +DK + + + + + V A G IE EIR F ++ K Y
Sbjct: 63 LRGIASDKAIFLTLRCIFNAFQNSRQGKEATPVSIANVCGRLIEDEIRFSKFQQQFKAY- 121
Query: 311 RKKIIADTEEVLSKEKELLRKRVNSLIKSKRVMEAQKLLKNEETKPWGRDTQAKLGSRLV 370
++I AD + SK+ + RV+ + KPW + +G RL+
Sbjct: 122 YQEIAADFKRKGSKDYRYMH----------RVLTHSANSHEDGWKPWSVSERVDVGMRLL 171
Query: 371 ELLIETAYVQHP--VNPADYSPPDVRPAFRHRFKTILKHPGQKTTKRYGVVECDPLVLEG 428
+L+ VQH + +Y R+ I+ P T + ++
Sbjct: 172 DLV-----VQHTDLIEKGEYK--------RNGQTIIVIRPTDATLE----------FIQK 208
Query: 429 LDRSAKHMLIPYVPMLVPPKKWKGYNKGGYLFLPSYVMRTH----GSRKQQEALKSVTGN 484
D A+ + +P ++ P W ++GGY + P+ H KQ++ L+
Sbjct: 209 YDEVAELIHPRQMPCIIKPDDWTAIDQGGY-YSPTLRSACHLVLTRHPKQKKILRRAD-- 265
Query: 485 CMKKVFEALDTLGSTKWRVNKQVLSVLESIWVSGGNIAGLVDRNDVLIP-EKPLS----E 539
+ V +A++ S +W+VNK+VL VL+ +W N+ V ++ L+P E P+ E
Sbjct: 266 -LSSVMQAVNGAQSVEWKVNKKVLEVLKLVWAK--NLQVGVPSSEKLVPSECPIKDKKKE 322
Query: 540 DMTEVQ-----KWKWSVRKAKKINQERHSQRCDTELKLSVARRMKDE----EGFYYPHNL 590
+MT+ + +WK R+A ++ R +R +++ R +E + F+Y L
Sbjct: 323 EMTDAEALVFMEWK---RQASEV-YTREKERIGKCFQITSILRAANEYSLYDRFWYVWQL 378
Query: 591 DFRGRAYPMHPHLNHLSSDVCRGVLEFAEGRPLGKSGLRWLKIHLANLFSGGVEKLSHDG 650
DFRGR Y + DV +G+L FA G+PLG G+ WLK+HLAN + G +K +D
Sbjct: 379 DFRGRLYTATSGFSPQGPDVAKGLLTFAGGKPLGSRGVYWLKVHLANRY--GFDKGHYDE 436
Query: 651 RLAFVENHLYEIFDSAENPINGSRWWLTAEDPFQCLAACINLSEA----LKSSSPHSVIS 706
R+ +V+ +A +PI W A+ P+Q LAA E L P IS
Sbjct: 437 RVQWVDQRHNAFIAAAADPIAHIDVWKDADKPYQFLAALFEYKEMHDGRLVGKRPEEYIS 496
Query: 707 HLPIHQDGSCNGLQHYAALGRNTLEAAAVNLVAGEKPADVYSEIAVRVHEIMKRDS--NK 764
+LPI DGSCNGLQH++A+ R+ + AA NLVA E+P D+Y+++A + +K++S
Sbjct: 497 YLPIGLDGSCNGLQHFSAMLRDPVGGAATNLVAAERPNDIYAQVAQVCLDKVKKESIAGS 556
Query: 765 DPSKHPQ---ALLAKILIDQVDRKLVKQTVMTSVYGVTFVGAREQIKRRLEE--KGHITD 819
D S + + ++ RK+ K+ VMT YG T + I + E H T
Sbjct: 557 DVSAVATEWVSFAVRYGDGKMPRKVAKRPVMTMPYGSTRQSCTQYIFEAVNELAPAHFT- 615
Query: 820 DRQLFAAACYAAKVTLTALGEIFEAARSIMGWLGDCAKVIASENQPVRWTTPLGLPVVQP 879
F A+ ++GE+ AAR M WL CA V++ + + W T G V
Sbjct: 616 SLSAFLASSALTPYLWNSIGEVVVAARQGMDWLQKCASVMSKQGLGITWRTKDGFIVYMF 675
Query: 880 YCKNERHLIRTSLQVLALQREGNLVKI---RKQRTAFPPNFVHSLDGSHMMMTAVACRDA 936
+ E I T L R GN + QR PNFVHS DG+H+ T + ++A
Sbjct: 676 EREMEVVRIDTVLGGRYQARVGNYTETLDKNGQRNGVAPNFVHSQDGAHLRATILKAQEA 735
Query: 937 GL 938
G+
Sbjct: 736 GI 737
>gi|431811028|ref|YP_007238103.1| putative RNA polymerase [Xanthomonas phage CP1]
gi|394556921|dbj|BAM29105.1| putative RNA polymerase [Xanthomonas phage CP1]
Length = 804
Score = 244 bits (623), Expect = 2e-61, Method: Compositional matrix adjust.
Identities = 219/795 (27%), Positives = 360/795 (45%), Gaps = 103/795 (12%)
Query: 182 QVKQETEAWERMVDEYKELEAKMIEKRLAPNLPHIKGLFLGWFGPLSEAIEREQKMQRTK 241
QV+ E +A+ + ++ A+ EK +A N P+ + ++ + PL++A++ EQ+ R K
Sbjct: 4 QVELELQAYSFGKERMEKAIARNEEKGVADNNPYAQAVYRRFVLPLADALKAEQQADRGK 63
Query: 242 KQKAAYAPHIELLPADKVAVIVMHKMMGLVMAGHEDRCVQVVQAAVHIGMAIEQEIRIHS 301
+K A+ +E + + A + + + +M D + ++ +G A+ E+ +
Sbjct: 64 GRKPAHLKLLEAVDPEPSAFVAVRAALVHLMGNPADNALILLS---RVGSAVYHELLLRD 120
Query: 302 FLEKTKNYKRKKIIADTEEVLSKEKELLRKRVNSLIKSKR--VMEAQKLLKNEETKPWGR 359
F T + K +A+ E R V ++R V+ ++ E W
Sbjct: 121 F--DTLDPKLFHSLANGAGRNMYAGERYRLEVFKAEGARRGVVLPEWEMADIERVGAWFS 178
Query: 360 DTQAKLGSRLVELLIETAYVQHPVNPADYSPPDVRPAFRHRFKTILKHPGQKTTKRYGVV 419
D A LG L I T H+ + KH + T V
Sbjct: 179 DQLATLGM----LSIST----------------------HQLAS--KHSTMEATLSEEVT 210
Query: 420 ECDPLVLEGLDRSAKHMLIPYVPMLVPPKKWKGYNKGGYLF-----LPSYVMRTHGSRKQ 474
E +++G+ ++P + PK W+ Y++GG+ L Y ++TH +
Sbjct: 211 E----LIDGIRDEVVENAAYFLPCVEKPKDWESYDEGGWHTDQMRRLMPYAIKTHAGVRH 266
Query: 475 QEALKSVTGNCMKKVFEALDTLGSTKWRVNKQVLSVLESIWVSGG--NIAGLVDRNDVLI 532
+ G + K L+TL +T+WR+N+++LSV+ + GG N+ ++ + +
Sbjct: 267 L-----LGGADLSKELACLNTLQATRWRINRRILSVMSRL---GGKINLGEVLAQGEEPR 318
Query: 533 PEKP-----------LSED-MTEVQKWK-----WSVRKAKKINQ-ERHSQRCDTELKLSV 574
P++P + ED + E + WK W RK K++ + R+ Q D V
Sbjct: 319 PDRPAWLLEKMEESQMDEDQLQEFRTWKRLMALWHARKKKRVTKWGRYRQAMD------V 372
Query: 575 ARRMKDEEGFYYPHNLDFRGRAYPMHPHLNHLSSDVCRGVLEFAEGRPLGKSGLR-WLKI 633
A R D E Y+ + DFRGR Y M ++ SD+ + +LEFAEG+PL G + W I
Sbjct: 373 ATRFADYENLYFVYFCDFRGRKYAMTTGVSPQGSDLQKALLEFAEGKPLHTKGAKDWFCI 432
Query: 634 HLANLFSGGVEKLSHDGRLAFVENHLYEIFDSAENPINGSRWWLTAEDPFQCLAACINLS 693
AN + G +K+ R+ +V H I +A +P N S WWL A P Q LA C+
Sbjct: 433 TGANRY--GYDKVDLGSRIEWVHTHHEFILSAARDPAN-SEWWLQASKPLQFLAWCMEYR 489
Query: 694 EALKSSSPHSVISHLPIHQDGSCNGLQHYAALGRNTLEAAAVNLVAGEKPADVYSEIAVR 753
+ + S SHL DGSCNGLQ+++A+ R+ + A NLV +P D+Y + +
Sbjct: 490 DWQEQGE--SFESHLSAGMDGSCNGLQNFSAMLRDEVGGEATNLVPLPQPQDIYGRVG-K 546
Query: 754 VHEIMKRDSNKDPSKHPQALLAKILIDQVDRKLVKQTVMTSVYGVTFVGAREQIKRRLEE 813
V E + DP + LA V+R +VK++VMT YG T + I +
Sbjct: 547 VTEQLLLQVPADPEGYRDRWLAH----GVNRSVVKRSVMTLPYGSTRFSCADFILKDYLN 602
Query: 814 KGHIT--DDRQLFAAACYAAKVTLTALGEIFEAARSIMGWLG-DCAKVIASENQPVRWTT 870
+G + + + AA Y +K A+G++ AR M WL +++I S + WTT
Sbjct: 603 EGLVPEFNTTEYAKAAQYLSKFVWKAIGDVVVKAREAMDWLQVSASELIKSGESHIFWTT 662
Query: 871 PLGLPVVQPYCKNERHLI------RTSLQVL-ALQREGNLVKIRKQRTAFPPNFVHSLDG 923
P G PV+Q Y + + I RT L V A+ R + + PNFVHSLD
Sbjct: 663 PTGFPVMQVYWEEQARQIETKLCGRTKLWVWNAVDRPDKC----RHKNGISPNFVHSLDA 718
Query: 924 SHMMMTAVACRDAGL 938
SH+ AC G+
Sbjct: 719 SHLTAVTNACTALGI 733
>gi|2330562|emb|CAA74929.1| DNA-directed RNA polymerase [Arabidopsis thaliana]
Length = 282
Score = 244 bits (623), Expect = 2e-61, Method: Compositional matrix adjust.
Identities = 129/212 (60%), Positives = 155/212 (73%), Gaps = 8/212 (3%)
Query: 90 IENSVDFHIPTCEQEQNFHQRVENTETCADLVIPRSENSTNHQLMCLEPRRRIFVQDPPW 149
I NSV FH E +N T A L I EN L RRR+F+QDPPW
Sbjct: 74 ISNSVHFHGNLIESFENQDSSYAGTIKGASL-IEELENPVERN--GLSGRRRLFMQDPPW 130
Query: 150 FSSIFLKGLYKRIKLQ---EYREMKKRKFNLLRRRQVKQETEAWERMVDEYKELEAKMIE 206
S++FLKGL K + E +++ KRKF+ LRRRQVK+ETEAWERMVDEY++LE +M E
Sbjct: 131 ISALFLKGLSKMVDQTLKIERKDIDKRKFDSLRRRQVKEETEAWERMVDEYRDLEKEMCE 190
Query: 207 KRLAPNLPHIKGLFLGWFGPLSEAIEREQKMQ--RTKKQKAAYAPHIELLPADKVAVIVM 264
K LAPNLP++K +FLGWF PL + IEREQK+Q ++KK +AAYAPHIELLPADK+AVIVM
Sbjct: 191 KNLAPNLPYVKHMFLGWFQPLKDVIEREQKLQKNKSKKVRAAYAPHIELLPADKMAVIVM 250
Query: 265 HKMMGLVMAGHEDRCVQVVQAAVHIGMAIEQE 296
HKMMGLVM+GHED C+QVVQAAV IG+AIEQE
Sbjct: 251 HKMMGLVMSGHEDGCIQVVQAAVSIGIAIEQE 282
>gi|260943574|ref|XP_002616085.1| hypothetical protein CLUG_03326 [Clavispora lusitaniae ATCC 42720]
gi|238849734|gb|EEQ39198.1| hypothetical protein CLUG_03326 [Clavispora lusitaniae ATCC 42720]
Length = 995
Score = 243 bits (621), Expect = 3e-61, Method: Compositional matrix adjust.
Identities = 165/474 (34%), Positives = 242/474 (51%), Gaps = 35/474 (7%)
Query: 414 KRYGVVECDPLVLEGLD------RSAKHMLIPYVPMLVPPKKWKGYNKGGYL--FLPSYV 465
KR GVV+ P + + + S ++L PML PPK+W GG+ +P
Sbjct: 464 KRVGVVKVHPFLPKQFETCLELFSSGSYLL----PMLHPPKEWVSPENGGFFDDLVPLVK 519
Query: 466 MRTHGSRKQQEALKSVTGNCMKKVFEALDTLGSTKWRVNKQVLSVLESIWVSGG---NIA 522
S A TG + ++E+L+ LGS W +N +L V G +I
Sbjct: 520 SIDQESTSFYMAQAHRTGQ-LDSIYESLNALGSVSWAINPSMLGVFNDAMSDKGGFMHIP 578
Query: 523 GLVDRNDVLIPEKPLSEDMTEVQKW------KWSVRKAK-KINQERHSQRCDTELKLSVA 575
G+ + + EKP D + + S R+A+ K +E HS R EL ++A
Sbjct: 579 GIKAPDSCEMLEKPQRCDFKAEKDYLSALARHRSTREARLKKKKEAHSLRVYYELVNTLA 638
Query: 576 RRM-KDEEGFYYPHNLDFRGRAYPMHPHLNHLSSDVCRGVLEFAEGRPLGKSGLRWLKIH 634
R + K+ + +YP N+DFRGR YP L+H S D+ R +L F E +PLG G WL+
Sbjct: 639 RSLEKNGDSIFYPQNIDFRGRVYPCVSFLSHHSEDLVRSLLMFWEAKPLGPKGYDWLQYQ 698
Query: 635 LANLFSGGVEKLSHDGRLAFVENHLYEIFDSAENPINGSRWWLTAEDPFQCLAACINLSE 694
LANL S LS + AFV N+ I +SA++P++ WW + P+QCLA C+ L
Sbjct: 699 LANLHSDHF--LSMEKSKAFVANNKEAIIESAKSPMSPQSWWRKGDSPWQCLAMCMELKN 756
Query: 695 ALK-SSSPHSVISHLPIHQDGSCNGLQHYAALGRNTLEAAAVNLVAGEKPADVYSEIAVR 753
+ +S +PIH DG+CNGLQHYAALG + A +VNL+ K DVY + R
Sbjct: 757 VWEYEGKKEEYLSRIPIHMDGTCNGLQHYAALGADKDAAVSVNLIPDTKKHDVYVTVLNR 816
Query: 754 VHEIMKRDSNKDPSKHPQALLAKILIDQVDRKLVKQTVMTSVYGVTFVGAREQIKRRLEE 813
V E + S+ + A A+ ++ + RK+VKQTVMT+VYGVT GA QI+ +L+E
Sbjct: 817 VRE--RVVSDLESVSDETAETARQVLPLLSRKIVKQTVMTTVYGVTLYGAFRQIREKLDE 874
Query: 814 ---KGHITDDR--QLFAAACYAAKVTLTALGEIFEAARSIMGW-LGDCAKVIAS 861
+G + Q A Y AK L A+ ++F A+ I W L +C + I++
Sbjct: 875 VFQEGSSVGEYNPQTAKMATYVAKHVLDAISDLFAGAKKIQNWLLENCRRCISA 928
>gi|441463685|gb|AGC35961.1| putative DNA-dependent RNA polymerase protein [Rhizobium phage
RHEph08]
gi|441463740|gb|AGC36015.1| putative DNA-dependent RNA polymerase protein [Rhizobium phage
RHEph09]
Length = 812
Score = 243 bits (619), Expect = 5e-61, Method: Compositional matrix adjust.
Identities = 213/784 (27%), Positives = 354/784 (45%), Gaps = 85/784 (10%)
Query: 191 ERMVDEYKELEAKMIEKRLAPNLPHIKGLFLGWFGPLSEAIEREQKMQRTKKQKAAYAPH 250
+R ++ Y++ + ++ + L + PL+EA+E ++ A H
Sbjct: 3 QRGIEAYRKAKEAALDGGRGSETGFARRLMDEYIQPLTEALEAAIVPRKGPGYAARAHVH 62
Query: 251 IELLPADKVAVIVMHKMMGLVMAGHEDRCVQVVQAAVHIGMAIEQEIRIHSFLEKTKNYK 310
+ + +DK + + + + + V A G +E EIR F ++ K Y
Sbjct: 63 LRGIASDKAIFLTLRCIFNAFQNSRQGKEATPVSIANVCGRLVEDEIRFSKFQQQFKAY- 121
Query: 311 RKKIIADTEEVLSKEKELLRKRVNSLIKSKRVMEAQKLLKNEETKPWGRDTQAKLGSRLV 370
++I AD + SK+ + RV+ + KPW + +G RL+
Sbjct: 122 YQEIAADFKRKGSKDYRYMH----------RVLTHSANSHEDGWKPWSVSERVDVGMRLL 171
Query: 371 ELLIETAYVQHP--VNPADYSPPDVRPAFRHRFKTILKHPGQKTTKRYGVVECDPLVLEG 428
+L+ VQH + +Y R+ I+ P T + ++
Sbjct: 172 DLV-----VQHTDLIEKGEYK--------RNGQTIIVIRPTDATLE----------FIQK 208
Query: 429 LDRSAKHMLIPYVPMLVPPKKWKGYNKGGYLFLPSY------VMRTHGSRKQQEALKSVT 482
D A+ + +P ++ P W ++GGY + P+ V+ H KQ++ L+
Sbjct: 209 YDEVAELIHPRQMPCIIKPDDWTAIDQGGY-YSPTLRSACHLVLTRH--PKQKKILRRAD 265
Query: 483 GNCMKKVFEALDTLGSTKWRVNKQVLSVLESIWVSGGNIAGLVDRNDVLIP-EKPLS--- 538
+ V +A++ S +W+VNK+VL VL+ +W N+ V ++ L+P E P+
Sbjct: 266 ---LSSVMQAVNGAQSVEWKVNKKVLEVLKLVWAK--NLQVGVPSSEKLVPSECPIKDKK 320
Query: 539 -EDMTEVQ-----KWKWSVRKAKKINQERHSQRCDTELKLSVARRMKDE----EGFYYPH 588
E+MT+ + +WK R+A ++ R +R +++ R +E + F+Y
Sbjct: 321 KEEMTDAEALVFMEWK---RQASEV-YTREKERIGKCFQITSILRAANEYSLYDRFWYVW 376
Query: 589 NLDFRGRAYPMHPHLNHLSSDVCRGVLEFAEGRPLGKSGLRWLKIHLANLFSGGVEKLSH 648
LDFRGR Y + DV +G+L FA G+PLG G+ WLK+HLAN + G +K +
Sbjct: 377 QLDFRGRLYTATSGFSPQGPDVAKGLLTFAGGKPLGSRGVYWLKVHLANRY--GFDKGHY 434
Query: 649 DGRLAFVENHLYEIFDSAENPINGSRWWLTAEDPFQCLAACINLSEA----LKSSSPHSV 704
D R+ +V+ +A +PI W A+ P+Q LAA E L P
Sbjct: 435 DERVQWVDQRHNAFIAAAADPIAHIDIWKDADKPYQFLAALFEYKEMHDGRLVGKRPEEY 494
Query: 705 ISHLPIHQDGSCNGLQHYAALGRNTLEAAAVNLVAGEKPADVYSEIAVRVHEIMKRDS-- 762
+S+LPI DGSCNGLQH++A+ R+ + AA NLVA E+P D+Y+++A + +K++S
Sbjct: 495 LSYLPIGLDGSCNGLQHFSAMLRDPVGGAATNLVAAERPNDIYAQVAQVCLDKVKKESIA 554
Query: 763 NKDPSKHPQ---ALLAKILIDQVDRKLVKQTVMTSVYGVTFVGAREQIKRRLEE--KGHI 817
D S + + ++ RK+ K+ VMT YG T + I + E H
Sbjct: 555 GSDVSAVATEWVSFAVRYGDGKMPRKVAKRPVMTMPYGSTRQSCTQYIFEAVNELAPAHF 614
Query: 818 TDDRQLFAAACYAAKVTLTALGEIFEAARSIMGWLGDCAKVIASENQPVRWTTPLGLPVV 877
T F A+ ++GE+ AAR M WL CA V++ + + W T G V
Sbjct: 615 T-SLSAFLASSALTPYLWNSIGEVVVAARQGMDWLQKCAGVMSKQGLGITWRTKDGFIVY 673
Query: 878 QPYCKNERHLIRTSLQVLALQREGNLVKI---RKQRTAFPPNFVHSLDGSHMMMTAVACR 934
+ E I T L R GN + QR PNFVHS DG+H+ T + +
Sbjct: 674 MFEREMEVVRIDTVLGGRYQARVGNYTETLDKNGQRNGVAPNFVHSQDGAHLRATILKAQ 733
Query: 935 DAGL 938
+AG+
Sbjct: 734 EAGI 737
>gi|241568699|ref|XP_002402558.1| DNA-directed RNA polymerase 2A, putative [Ixodes scapularis]
gi|215500047|gb|EEC09541.1| DNA-directed RNA polymerase 2A, putative [Ixodes scapularis]
Length = 389
Score = 243 bits (619), Expect = 5e-61, Method: Compositional matrix adjust.
Identities = 160/408 (39%), Positives = 224/408 (54%), Gaps = 36/408 (8%)
Query: 541 MTEVQKWKWSVRKA--KKINQERHSQRCDTELKLSVARRMKDEEGFYYPHNLDFRGRAYP 598
MT+++K K S + K+ E +S CD KLS+A + + F L R
Sbjct: 1 MTKLEKAKVSRERMVLKRKRAEMYSLWCDALYKLSIANHVTINKAFL--PKLPCSRRHLL 58
Query: 599 MHPHLNHLSSDVCRGVLEFAEGRPLGKSGLRWLKIHLANLFSGGVEKLSHDGRLAFVENH 658
P + + DV RG+L FA G PLG+ GL WLK+HL NL +G ++ RL F
Sbjct: 59 CSPGESAVGRDVVRGILLFARGEPLGEKGLDWLKVHLINL-TGLKKREPASERLKFANKM 117
Query: 659 LYEIFDSAENPINGSRWWLTAEDPFQCLAACINLSEALKSSSPHSVISHLPIHQDGSCNG 718
L EI DSA+NP+ G RWW ++E+P+Q LA C ++ A++S P + HLP+HQDGSCNG
Sbjct: 118 LPEILDSADNPMTGRRWWASSEEPWQTLACCREVAAAVRSPDPRRYVCHLPVHQDGSCNG 177
Query: 719 LQHYAALGRNTLEAAAVNLVAGEKPADVYSEIAVRVHEIMKRDSNKDPSKHPQALLAKIL 778
LQHYAALGR+ A VNL+ ++P DVYS +A V +R+ KD + +A++L
Sbjct: 178 LQHYAALGRDAHGARQVNLLPEDRPQDVYSGVAAMV----ERERTKDAAN--GVAIAQVL 231
Query: 779 IDQVDRKLVKQTVMTSVYGVTFVGAREQIKRRLEEKGHITDDRQLFAAACYAAKVTLTAL 838
+ RK+VKQTVMT VYGVT GA QI ++L++ + +AA+ Y + T +L
Sbjct: 232 EGFIKRKVVKQTVMTVVYGVTRFGAHLQIMKQLKDLEDFPQE-HCWAASHYLVQRTFLSL 290
Query: 839 GEIFEAARSIMGWLGDCAKVIASENQPVRWTTPLGLPVVQPYCKN----ERHLIRTSLQV 894
E+F A R I +V A+E+ R T P L Y + E L S
Sbjct: 291 QEMFTATREI--------QVRATESP--RITGP-ALKCTSEYVLSSWALEECLFPGSWDQ 339
Query: 895 L------ALQREGNLV---KIRKQRTAFPPNFVHSLDGSHMMMTAVAC 933
+ + +R N + KQ+ AFPPNF+HSLD SHMM+TA+ C
Sbjct: 340 MVHSLLASYKRSLNFFMWPNVMKQKNAFPPNFIHSLDSSHMMLTALFC 387
>gi|448537583|ref|XP_003871363.1| hypothetical protein CORT_0H01220 [Candida orthopsilosis Co 90-125]
gi|380355720|emb|CCG25238.1| hypothetical protein CORT_0H01220 [Candida orthopsilosis]
Length = 1236
Score = 241 bits (616), Expect = 1e-60, Method: Compositional matrix adjust.
Identities = 177/564 (31%), Positives = 261/564 (46%), Gaps = 105/564 (18%)
Query: 440 YVPMLVPPKKWKGYNKGGYL-----FLPSYVMRTHGSRKQQEALKSV-TGNCMKKVFEAL 493
+ P+L PP+ W G NKG YL FL + + QQ L++ + F+ L
Sbjct: 514 HFPLLCPPEPWLGVNKGAYLERSTPFLSGF------DQLQQTILQNAHLQGKLDSAFKCL 567
Query: 494 DTLGSTKWRVNKQVLSVLESIWVSGGNIAGLVDRNDVLIPEKPLSEDMTEVQKWKWSVRK 553
D +G T W +N +LSV + G +D IP K + EV K
Sbjct: 568 DQMGKTAWSINPDLLSVFNKVMEIP---QGFLD-----IPPK-----VIEVSS------K 608
Query: 554 AKKINQERHSQRCDTE-LKLSVARRMKDEEGFYYPHNLDFRGRAYPMHPHLNHLSSDVCR 612
+K+ + R + E +K+ ++ + Y+ + DFRGR YP+ P L H D+ R
Sbjct: 609 SKQEIIDIKGLRSNFETVKMLANAFGRNGDMLYHCYVFDFRGRVYPLSP-LTHYGGDLTR 667
Query: 613 GVLEFAEGRPLGKSGLRWLKIHLANLFSGGVEKLSHDGRLAFVENHLYEIFDSAENPING 672
+ +F G+PLG +G W+K L ++F GG D F +N + EI DSA +P++
Sbjct: 668 SLFQFWHGQPLGANGFYWIKYQLMSVFGGGT-----DCEQFFNQNRV-EIIDSAVDPLH- 720
Query: 673 SRWWLTAEDPFQCLAACINLSEALK-----SSSPHSVISHLPIHQDGSCNGLQHYAALGR 727
+RWW+ A++PF L+ CI + + L+ S + LPIHQDGSCNGLQHYAAL
Sbjct: 721 NRWWMKADEPFSALSVCIEIRKILQFLEQGKGSIEEYVCRLPIHQDGSCNGLQHYAALAA 780
Query: 728 NTLEAAAVNLVAGEKPADVYSEIAVRVH-EIMKRDSNKDPSKHPQALLAKILIDQVDRKL 786
+ L AVNLV + DVYS + V +I+ NK K A+ ++ +DRKL
Sbjct: 781 DGLGGKAVNLVPMDTKQDVYSTVRDIVECKIIDDVENKLLEKDRDH--AEFMLKILDRKL 838
Query: 787 VKQTVMTSVYGVTFVGAREQI----------------KRRLEEKGHITDDRQL-FAAACY 829
+K+ VMT+VYGVT GA QI KR L + I RQ + Y
Sbjct: 839 IKRPVMTTVYGVTLAGASRQILENIEKIVSDHDENPSKRGLYDDSTIDKLRQFNLKSTIY 898
Query: 830 AAKVTLTALGEIFEAARSIMGWLGDCA-KVIASEN------------------------- 863
A+ L+++ ++F A+ + WL D +++ S N
Sbjct: 899 LARKILSSIDDLFYNAKQMERWLVDNTRRILTSHNVKTLNYLQSKTFASASLTSTSATKA 958
Query: 864 -----------QPVRWTTPLGLPVVQPYCKNER-HLIRTSLQVLALQREGNLVKI--RKQ 909
P+ W + G PV+Q Y K + H + +L + + + RK
Sbjct: 959 LSNWYKTPISYTPISWISASGFPVIQTYRKKSQPHSVTGALGSIMQRASSKYAPMDRRKH 1018
Query: 910 RTAFPPNFVHSLDGSHMMMTAVAC 933
A PNF+HSLD SHM MT AC
Sbjct: 1019 ELAIAPNFIHSLDASHMFMTCDAC 1042
>gi|194100470|ref|YP_002003315.1| gp1 [Yersinia phage Yepe2]
gi|193201203|gb|ACF15684.1| gp1 [Yersinia phage Yepe2]
gi|387941867|gb|AFK13447.1| DNA-directed RNA polymerase [Yersinia phage YpP-G]
Length = 883
Score = 241 bits (615), Expect = 1e-60, Method: Compositional matrix adjust.
Identities = 212/705 (30%), Positives = 336/705 (47%), Gaps = 106/705 (15%)
Query: 286 AVHIGMAIEQEIRIHSFL-EKTKNYKRKKIIADTEEVLSKEKELLRKRVNSLIKSKRVME 344
A IG +IE E+R E+ K++K +E L+K ++ K+ +++E
Sbjct: 139 ATKIGRSIEDELRFGRIRDEEAKHFKNH-----VQEALNKRVGIVYKKAFMQAVEGKMLE 193
Query: 345 AQKLLKNEETKPWGRDTQAKLGSRLVELLI-ETAYVQHPVNPADYSPPDVRPAFRHR-FK 402
A +L T W + +G R++ELLI T V+ HR F
Sbjct: 194 AGQLHTKWTT--WTPEEVIHVGVRMLELLIGSTGLVE-----------------LHRPFA 234
Query: 403 TILKHPGQ--KTTKRYGVVECDPLVLEGLDRSAKHM--LIP-YVPMLVPPKKWKGYNKGG 457
++ G+ + T++Y ++ L + A + + P Y P +VPPK W GG
Sbjct: 235 GNIEKDGEYIQLTEQY---------VDLLSKRAGALAAIAPMYQPCVVPPKPWTSPVGGG 285
Query: 458 YLFL---PSYVMRTHGSRKQQEALKSVTGNCMKKVFEALDTLGSTKWRVNKQVLSVLESI 514
Y P ++RT GS+K E V M +V++A++ +T W++NK+VL+V+ I
Sbjct: 286 YWAAGRKPLSMVRT-GSKKGLERYNDV---YMPEVYKAVNIAQNTPWKINKKVLAVVNEI 341
Query: 515 WVSGGN--IAGLVDRNDVLIPEKPLSEDMTEV--QKWKWSVRKAKKINQERHSQRCDTEL 570
VS + +A + +P KP+ D EV + WK + + + R S+R E
Sbjct: 342 -VSWKHCPVADVPAMERGELPVKPVDIDTNEVALKAWKKAASAIYRKEKARVSRRMSMEF 400
Query: 571 KLSVARRMKDEEGFYYPHNLDFRGRAYPMHPHLNHLSSDVCRGVLEFAEGRPLGKSGLRW 630
L A + + ++P N+D+RGR Y + P N +D+ +G+L A+G+P+G G W
Sbjct: 401 MLGQANKFAQFKAIWFPMNMDWRGRVYAV-PMFNPQGNDMTKGLLTLAKGKPIGVDGFYW 459
Query: 631 LKIHLANLFSGGVEKLSHDGRLAFVENHLYEIFDSAENPINGSRWWLTAEDPFQCLAACI 690
LKIH AN + GV+K+ R+ F++++ I A +PI + WW + PF LA C
Sbjct: 460 LKIHGAN--TAGVDKVDFAERIKFIDDNHENIMSVAADPI-ANTWWTEQDSPFCFLAFCF 516
Query: 691 NLSEALKSSSPHSVISHLPIHQDGSCNGLQHYAALGRNTLEAAAVNLVAGEKPADVYSEI 750
+ ++ LP+ DGSC+G+QH++A+ R+ + AVNL+ ++ D+Y +
Sbjct: 517 EYAGVQHHGMNYNC--SLPLAFDGSCSGIQHFSAMLRDEVGGRAVNLLPSKEVQDIYRIV 574
Query: 751 AVRVHEIMKRD------------SNKDPSK-------HPQALLAKILIDQVDRKLVKQTV 791
A RV+EI+ +D +NKD + + L + L V RK+ K++V
Sbjct: 575 AERVNEILNQDVINGTDNEVETLTNKDTGEITEKLKLGTKELAGQWLAYGVTRKVTKRSV 634
Query: 792 MTSVYGVTFVGAREQIKRRLEE--KGHITDDRQLF-----AAACYAAKVTLTALGEIFEA 844
MT YG G R+Q+ LE+ + I D + L AA Y AK+ A+ A
Sbjct: 635 MTLAYGSKEYGFRDQV---LEDTIQPAIDDGKGLMFTQPNQAAGYMAKLIWNAVTVTVVA 691
Query: 845 ARSIMGWLGDCAKVIASENQ------------PVRWTTPLGLPVVQPYCK------NERH 886
A M WL AK++A+E + V W TP G PV Q Y K N
Sbjct: 692 AVEAMNWLKSAAKLLAAEVKDKKTKEVLRNRCAVYWVTPDGFPVWQEYRKPVQTRLNLMF 751
Query: 887 LIRTSLQVLALQREGNLVKIRKQRTAFPPNFVHSLDGSHMMMTAV 931
L + LQ + + + RKQ + PNFVHS+DGSH+ MT V
Sbjct: 752 LGQIRLQPTVNTNKDSGIDARKQESGIAPNFVHSMDGSHLRMTVV 796
>gi|194100420|ref|YP_002003793.1| gp1 [Klebsiella phage K11]
gi|193201359|gb|ACF15837.1| gp1 [Klebsiella phage K11]
Length = 906
Score = 241 bits (615), Expect = 2e-60, Method: Compositional matrix adjust.
Identities = 227/836 (27%), Positives = 383/836 (45%), Gaps = 130/836 (15%)
Query: 178 LRRRQVKQETEAWERMVDEY-KELEAKMIEKRLAPNLPHIKGLFLGWFGPLSEAIE---R 233
L R Q+ E EA+E + K LE ++ A N K L L L++ I+
Sbjct: 32 LAREQLALEHEAYELGEQRFLKMLERQVKAGEFADNAA-AKPLVLTLHPQLTKRIDDWKE 90
Query: 234 EQKMQRTKKQKAAY------------APHIELL------PADKVAVIVMHKMMGLVMAGH 275
EQ R KK +A Y + E+L ++ +A++ + ++G +
Sbjct: 91 EQANARGKKPRAYYPIKHGVASKLAVSMGAEVLKEKRGVSSEAIALLTIKVVLGTLTDAS 150
Query: 276 EDRCVQVVQAAVHIGMAIEQEIRIHSFLEKTKNYKRKKIIADTEEVLSKEKELLRKRVNS 335
+ + Q + +G A+E E R E+ Y +K + + L KRV
Sbjct: 151 K---ATIQQVSSQLGKALEDEARFGRIREQEAAYFKKNV-----------ADQLDKRVGH 196
Query: 336 LIKSK--RVMEA----QKLLKNEETKPWGRDTQAKLGSRLVELLIE-TAYVQHPVNPADY 388
+ K +V+EA + +L + W D Q +G++L+ELLIE T V+ N
Sbjct: 197 VYKKAFMQVVEADMISKGMLGGDNWASWKTDEQMHVGTKLLELLIEGTGLVEMTKNKMAD 256
Query: 389 SPPDVRPAFRHRFKTILKHPGQKTTKRYGVVECDPLVLEGLDRSAKHM--LIP-YVPMLV 445
DV +V+ P +E L + A + + P + P +V
Sbjct: 257 GSDDV--------------------TSMQMVQLAPAFVELLSKRAGALAGISPMHQPCVV 296
Query: 446 PPKKWKGYNKGGYLFL---PSYVMRTHGSRKQQEALKSVTGNCMKKVFEALDTLGSTKWR 502
PPK W GGY + P ++RTH + AL+ M +V++A++ +T W+
Sbjct: 297 PPKPWVETVGGGYWSVGRRPLALVRTHSKK----ALRRYADVHMPEVYKAVNLAQNTPWK 352
Query: 503 VNKQVLSVLESI--W--VSGGNIAGLVDRNDVLIPEKPLSEDMTEVQKWKWSVRKAK--K 556
VNK+VL+V+ I W G++ ++R + +P +P D EV + W A +
Sbjct: 353 VNKKVLAVVNEIVNWKHCPVGDVPA-IEREE--LPPRPDDIDTNEVARKAWRKEAAAVYR 409
Query: 557 INQERHSQRCDTELKLSVARRMKDEEGFYYPHNLDFRGRAYPMHPHLNHLSSDVCRGVLE 616
++ R S+R E ++ A + + + ++P+N+D+RGR Y + N +D+ +G+L
Sbjct: 410 KDKARQSRRLSMEFMVAQANKFANHKAIWFPYNMDWRGRVYAV-SMFNPQGNDMTKGMLT 468
Query: 617 FAEGRPLGKSGLRWLKIHLANLFSGGVEKLSHDGRLAFVENHLYEIFDSAENPINGSRWW 676
A+G+P+G G WLKIH AN GV+K+ R+ F+E + I SA +P+N + WW
Sbjct: 469 LAKGKPIGLDGFYWLKIHGAN--CAGVDKVPFPERIKFIEENEGNILASAADPLNNT-WW 525
Query: 677 LTAEDPFQCLAACINLSEALKSSSPHSVISHLPIHQDGSCNGLQHYAALGRNTLEAAAVN 736
+ PF LA C + ++ LP+ DGSC+G+QH++A+ R+++ AVN
Sbjct: 526 TQQDSPFCFLAFCFEYAGVKHHGLNYNC--SLPLAFDGSCSGIQHFSAMLRDSIGGRAVN 583
Query: 737 LVAGEKPADVYSEIAVRVHEIM------------KRDSNKDPSKHPQ-------ALLAKI 777
L+ + D+Y +A +V+E++ ++ ++K+ + + L A+
Sbjct: 584 LLPSDTVQDIYKIVADKVNEVLHQHAVNGSQTVVEQIADKETGEFHEKVTLGESVLAAQW 643
Query: 778 LIDQVDRKLVKQTVMTSVYGVTFVGAREQIKRRLEEKGHITDDRQLFA----AACYAAKV 833
L V RK+ K++VMT YG G R+Q+ + + +F AA Y AK+
Sbjct: 644 LQYGVTRKVTKRSVMTLAYGSKEFGFRQQVLEDTIQPAIDNGEGLMFTHPNQAAGYMAKL 703
Query: 834 TLTALGEIFEAARSIMGWLGDCAKVIASENQ------------PVRWTTPLGLPVVQPYC 881
A+ AA M WL AK++A+E + + W TP G PV Q Y
Sbjct: 704 IWDAVTVTVVAAVEAMNWLKSAAKLLAAEVKDKKTKEVLRKRCAIHWVTPDGFPVWQEYR 763
Query: 882 KNER------HLIRTSLQVLALQREGNLVKIRKQRTAFPPNFVHSLDGSHMMMTAV 931
K + L + ++++ + + + KQ + PNFVHS DGSH+ MT V
Sbjct: 764 KQNQARLKLVFLGQANVKMTYNTGKDSEIDAHKQESGIAPNFVHSQDGSHLRMTVV 819
>gi|149234804|ref|XP_001523281.1| hypothetical protein LELG_05507 [Lodderomyces elongisporus NRRL
YB-4239]
gi|146453070|gb|EDK47326.1| hypothetical protein LELG_05507 [Lodderomyces elongisporus NRRL
YB-4239]
Length = 1259
Score = 241 bits (615), Expect = 2e-60, Method: Compositional matrix adjust.
Identities = 174/602 (28%), Positives = 267/602 (44%), Gaps = 77/602 (12%)
Query: 395 PAFRHRFKTILKHPGQKTTKRYGVVECDPLVLEGLDRSAKHMLIPYVPMLVPPKKWKGYN 454
P F ILK + R+ ++ +P + + + + + P+L PP+ W G++
Sbjct: 518 PGLYRAFTDILKSNKKHAKVRFILI--NPALSKSVKLGSTFGDQHFFPLLCPPQPWLGHS 575
Query: 455 KGGYLFLPSYVMRTHGSRKQQEALKSVTGNCMKKVFEALDTLGSTKWRVNKQVLSVLESI 514
GG + + Q+ K+ + + F LD +G T W VN +L V
Sbjct: 576 TGGMMNSAINFVAGFDKLHQRFLQKAQLQGKLDRAFLCLDQMGKTGWCVNTDILDVFNKA 635
Query: 515 WVSGGNIAGLVDRNDVLIPEKPLSEDMTEVQKWKWSVRKAKKINQERHSQRCDTELKLSV 574
+ + D + P KP + +V R +KI + +K
Sbjct: 636 MDLPSGLLKIPPPLDTM-PTKPKDQTARDV-------RNQRKIYET---------IKAVA 678
Query: 575 ARRMKDEEGFYYPHNLDFRGRAYPMHPHLNHLSSDVCRGVLEFAEGRPLGKSGLRWLKIH 634
+ + ++ + DFRGRAY + +NH D+ R + +F E +PLG+ G WLK
Sbjct: 679 NAYGVNGDILFHCYLFDFRGRAYAL-SQINHYGEDIMRSLFQFWEAKPLGERGFYWLKYQ 737
Query: 635 LANLFSGGVEKLSHDGRLAFVENHLYEIFDSAENPINGS---RWWLTAEDPFQCLAACIN 691
LA+LF G E + F E H I +A NP++ RWWL A+ PFQ LA C+
Sbjct: 738 LASLFKPGKETSCEE----FFEKHKNNILQAASNPLDDEALRRWWLQADKPFQFLATCME 793
Query: 692 LSEALK----SSSPHSVISHLPIHQDGSCNGLQHYAALGRNTLEAAAVNLVAGEKPADVY 747
+++ LK ++ + I +PIHQDGSCNGLQHYA L R+ L +VNL+ E DVY
Sbjct: 794 VAKVLKHLGNGNNVATFICRMPIHQDGSCNGLQHYAGLARDDLGGRSVNLLPLETKMDVY 853
Query: 748 SEIAVRVHEIMKRDSNKDPSKHPQALLAKILIDQVDRKLVKQTVMTSVYGVTFVGAREQI 807
E+ V + ++ D + + AK+++ +DRKLVK+ VMT+VYGVT GA EQI
Sbjct: 854 VEVRDLVEKKIRNDIGTQLAAPEEVAKAKLILQILDRKLVKRPVMTTVYGVTRYGASEQI 913
Query: 808 KRRLEEK--------GHITDDRQLFA--------AACYAAKVTLTALGEIFEAARSIMGW 851
R++E + D L + A Y + A+ ++F+ A+ I W
Sbjct: 914 YSRIKEMINGIEQNPAKSSADDVLLSRLKTFQQRDATYLVEKIFAAIDDLFKNAKRIETW 973
Query: 852 LGDCAKVIASENQ--------------------------PVRWTTPLGLPVVQPYCKNER 885
L A I + P+ W + G PV+Q Y +
Sbjct: 974 LTHTANRINTSYNVKTLDYLYRLKRSLKDTYITNPVNLAPISWISVSGFPVIQVYRDMPK 1033
Query: 886 HLIRTSLQVLALQREGNLVKI--RKQRTAFPPNFVHSLDGSHMMMT--AVACRDAGLHFA 941
+ L + N + +K A PNF+HSLD SHM MT A A + L FA
Sbjct: 1034 VQTQGVLGSTSRDASENFAPMDRKKHELAIAPNFIHSLDASHMAMTCSAAAAENPSLVFA 1093
Query: 942 GL 943
+
Sbjct: 1094 SI 1095
>gi|269838910|ref|YP_003324580.1| RNA polymerase [Morganella phage MmP1]
gi|265232571|gb|ACY74627.1| RNA polymerase [Morganella phage MmP1]
Length = 883
Score = 240 bits (613), Expect = 2e-60, Method: Compositional matrix adjust.
Identities = 205/743 (27%), Positives = 341/743 (45%), Gaps = 89/743 (11%)
Query: 241 KKQKAAYAPHIELLPADKVAVIVMHKMMGLVMAGHEDRCVQVVQAAVHIGMAIEQEIRIH 300
K +K H++ + + +A I + ++ +AG +D +Q + A IG +IE E R
Sbjct: 99 KGRKPIAYTHLKDIKPETLAFITIKVVLN-KLAGKDDAFMQPL--AYAIGSSIEDEARFG 155
Query: 301 SFLEKTKNYKRKKIIADTEEVLSKEK-ELLRKRVNSLIKSKRVMEAQKLLKNEETKPWGR 359
E + +K EE L+K + RK S++++ M + LL E W +
Sbjct: 156 RIRELEMAHFKKC----AEENLNKRRGTAYRKAFLSVVEAD--MLDKGLLGGESWGTWNK 209
Query: 360 DTQAKLGSRLVELLIETAYVQHPVNPADYSPPDVRPAFRHRFKTILKHPGQKTTKRYGVV 419
+G ++E LIE + ++ D R ++ T+ +
Sbjct: 210 TDVMNIGISMLEKLIEATGLVELREKRNFEEMD-------RIVIAEEYVKAMATRAQSLA 262
Query: 420 ECDPLVLEGLDRSAKHMLIPYVPMLVPPKKWKGYNKGGYLF---LPSYVMRTHGSRKQQE 476
P+ Y P +VPPK W GGY P+ ++RTH +RK
Sbjct: 263 GISPM---------------YQPCVVPPKPWVSITGGGYWANGRKPTALIRTH-TRK--- 303
Query: 477 ALKSVTGNCMKKVFEALDTLGSTKWRVNKQVLSVLESIWVSGGN-IAGLVDRNDVLIPEK 535
AL M +V++A++ T WR+N++VL+V+ + N + + + + +P++
Sbjct: 304 ALYRYEDVYMPEVYKAINYAQETPWRINRKVLAVVNELVKWKNNPVKDMPSIDKLELPQR 363
Query: 536 PLSEDMTE--VQKWKWSVRKAKKINQERHSQRCDTELKLSVARRMKDEEGFYYPHNLDFR 593
P D E ++ WK + +++R S+ L A + +++ Y+P+N+D+R
Sbjct: 364 PDDIDTNEEALRSWKREAAAVYRKDEQRKSRYLSMSFALEQANKFSNKKAIYFPYNMDWR 423
Query: 594 GRAYPMHPHLNHLSSDVCRGVLEFAEGRPLGKSGLRWLKIHLANLFSGGVEKLSHDGRLA 653
GR Y + P N +D+ +G+L A+G+P+GK G WLKIH AN + GV+K++ R+
Sbjct: 424 GRVYAL-PMFNPQGNDMVKGLLTLAKGKPIGKDGFYWLKIHGAN--TAGVDKVTFPERIK 480
Query: 654 FVENHLYEIFDSAENPINGSRWWLTAEDPFQCLAACINLSEALKSSSPHSVISHLPIHQD 713
F+E++ I AE+P++ + WW + PF LA C ++ K + LPI D
Sbjct: 481 FIEDNHDNIMQCAESPLD-NLWWTEQDSPFCFLAFCFEYAQVTKKGL--GWVCSLPIALD 537
Query: 714 GSCNGLQHYAALGRNTLEAAAVNLVAGEKPADVYSEIAVRVHEIMKR----------DSN 763
GSC+G+QH++A+ R+ + AVNL+ E D+Y +A +V+E +K D+
Sbjct: 538 GSCSGIQHFSAMLRDDIGGRAVNLLPSETVQDIYGIVADKVNEALKELVINGTDNYTDTV 597
Query: 764 KDPSK---------HPQALLAKILIDQVDRKLVKQTVMTSVYGVTFVGAREQIKRRLEEK 814
D S + L + L V R + K++VMT YG G R+Q+
Sbjct: 598 TDKSTGEIIERYRLGEKELARQWLEFGVTRSVTKRSVMTLAYGSKEYGFRDQVLEDTIRP 657
Query: 815 GHITDDRQLFA----AACYAAKVTLTALGEIFEAARSIMGWLGDCAKVIASENQ------ 864
+ +F AA + AK A+ AA M WL AK++A+E +
Sbjct: 658 AIDSGKGAMFTNPSQAASFMAKRIWEAVSVTVVAAVGAMKWLQSSAKLMAAEVKDKKTKE 717
Query: 865 ------PVRWTTPLGLPVVQPYCKNER---HLIRTSLQVLALQREGN---LVKIRKQRTA 912
V W TP G PV Q Y K ++ HL+ A +E + + KQ +
Sbjct: 718 VLRKRCAVHWVTPDGFPVWQEYRKPKQKRVHLMFLGSYYDARMKETSSDCSIDAHKQESG 777
Query: 913 FPPNFVHSLDGSHMMMTAVACRD 935
PNFVHS DG+H+ MT V R+
Sbjct: 778 ISPNFVHSQDGNHLRMTVVYARE 800
>gi|197935879|ref|YP_002213715.1| DNA-directed RNA polymerase [Ralstonia phage RSB1]
gi|197927042|dbj|BAG70384.1| DNA-directed RNA polymerase [Ralstonia phage RSB1]
Length = 805
Score = 240 bits (613), Expect = 3e-60, Method: Compositional matrix adjust.
Identities = 208/766 (27%), Positives = 352/766 (45%), Gaps = 88/766 (11%)
Query: 210 APNLPHIKGLFLGWFGPLSEAIEREQKMQRTKKQKAAYAPHIELL----PADKVAVIVMH 265
A N P+ L+ + PL + I ++ +TK + + H+ LL PA A I +
Sbjct: 21 ADNNPYATALYRQYVLPLRDLITSTIELHKTKAGR--HGAHVSLLKQVDPA-VAAYIAVR 77
Query: 266 KMMGLVMAGHEDRCVQVVQAAVHIGMAIEQEIRIHSFLEKTKNYKRKKIIADTEEVLSKE 325
+ +++AG + + HIG++I++E+ + F E + ++ D + SK
Sbjct: 78 TAITVLLAGAANSARALSN---HIGLSIQREVTLAGF-EISNPDLFWEVSHDLDRRHSKA 133
Query: 326 KELLRKRVNSLIKSKRVMEAQKLLKNEETKPWGRDTQAKLGSRLVELLIETAYVQHPVNP 385
+ R +L+ + R E E WG + ++GS ++E L V+ ++
Sbjct: 134 SQ---HRYAALMGAARNKEI-------ELPMWGVGDREQIGSWMLETLRTLGMVE-VLHH 182
Query: 386 ADYSPPDVRPAFRHRFKTILKHPGQKTTKRY-GVVECD-PLVLEGLDRSAKHMLIPYVPM 443
+++ R R R + L T +R G+VE PL ++P
Sbjct: 183 KEWN----RGKMRERIEASLSEDAMHTVQRISGLVELTMPL---------------HMPC 223
Query: 444 LVPPKKWKGYNKGGY------LFLPSYVMRTHGSRKQQEALKSVTGNCMKKVFEALDTLG 497
+ PPK W N+GGY +P V+ H K L + + V A++ L
Sbjct: 224 IEPPKPWTSLNEGGYHSKEMRYIMPHCVVMRH--VKSPALLDELRAHNWGTVLTAINALQ 281
Query: 498 STKWRVNKQVLSVLESIWVSGGNIAGLVDRNDVLIPEKP--LSEDMTEVQKWKWSVRKAK 555
T W++N ++L + ++ N+ +V + + P KP L++DM + + +R+
Sbjct: 282 QTAWQINGEMLQTILTV-AKHHNMDEIVSQAESPKPGKPDWLADDMKKEDMDEDQLREFH 340
Query: 556 KINQERHSQRCDTELKLS----------VARRMKDEEGFYYPHNLDFRGRAYPMHPHLNH 605
+E D +L+ + VA MKD E Y+ + DFRGR Y ++
Sbjct: 341 MWKREMAQWHTDRKLQGTKWGRFYTATRVANEMKDYESIYFTYQADFRGRLYAQTTGVSP 400
Query: 606 LSSDVCRGVLEFAEGRPLG-KSGLRWLKIHLANLFSGGVEKLSHDGRLAFVENHLYEIFD 664
SD+ + +L FA+G PLG + ++W KI+ AN F GV+K+ + R+A+V+ H I
Sbjct: 401 QGSDLQKSLLRFAKGLPLGTDAAVQWFKINGANRF--GVDKVPYAERIAWVDEHAARIIA 458
Query: 665 SAENPINGSRWWLTAEDPFQCLAACINLSEALKSSSPHSVISHLPIHQDGSCNGLQHYAA 724
A++P++ W A+ P Q LA + + P + +S + + DGSCNGLQH++A
Sbjct: 459 MADDPVSNFGW-AEADSPLQFLAWAKEFARWKRD--PANFVSQIAVGMDGSCNGLQHFSA 515
Query: 725 LGRNTLEAAAVNLVAGEKPADVYSEIAVRVHEIMKRDSNKDPSKHPQALLAKILIDQVDR 784
+ R+ + A NL+ G KP D+Y+++A + D + L ++R
Sbjct: 516 MLRDDVGGRATNLLPGAKPNDIYAQVATVTQARLAALILPDDDARGREFQRLWLKHGINR 575
Query: 785 KLVKQTVMTSVYGVTFVGAREQIKRRLEEKGHIT--DDRQLFAAACYAAKVTLTALGEIF 842
KLVK++VMT YG T + I + KG + Q +AA + + ++G++
Sbjct: 576 KLVKRSVMTLPYGSTRFSCADFIVQDYLRKGLAPEFEQAQYASAASWLSHHVWASIGQVV 635
Query: 843 EAARSIMGWLGDCAKVIASENQP-VRWTTPLGLPVVQPYCKNERHLIRTSLQVLALQREG 901
A+ M WL C+KVI ++ P +RWTTP G VVQ Y E + I + L G
Sbjct: 636 VASAEAMAWLQKCSKVIMAKGHPQIRWTTPSGFSVVQVYNGYEEYRISSRL------LGG 689
Query: 902 NLVKIRK---------QRTAFPPNFVHSLDGSHMMMTAVACRDAGL 938
+K+R + PNFVHS+D SHM + V C G+
Sbjct: 690 MRLKVRSAIDEPDSNLHKNGIAPNFVHSMDASHMALCIVDCVGKGI 735
>gi|326424965|ref|YP_004286187.1| putative RNA polymerase [Pseudomonas phage phi15]
gi|325048369|emb|CBZ41982.1| putative RNA polymerase [Pseudomonas phage phi15]
Length = 882
Score = 239 bits (611), Expect = 4e-60, Method: Compositional matrix adjust.
Identities = 215/762 (28%), Positives = 348/762 (45%), Gaps = 107/762 (14%)
Query: 234 EQKMQRTKKQKAAYAPHIELLPADKVAVIVMHKMMGLVMAGHEDRCVQVVQAAVHIGMAI 293
E +M+ +++ A I+++ ++VAVI + ++ + G D +Q + A IG I
Sbjct: 87 EHQMKNVRRKSVAL-KFIQMVATERVAVITIKTVINAMSQG--DVVLQAI--AGRIGRGI 141
Query: 294 EQEIRIHSFLEKTKNYKRKKIIADTEEVLSKEKELLRKRVNSLIKSKRVMEAQKLLKNEE 353
E+E R ++ + +K I E L+K KR R++EA +L N
Sbjct: 142 EEEARFGRIRDQEAKHFKKYI----REALNKRNGHTYKRAYMHAVEDRMLEAGEL--NGA 195
Query: 354 TKPWGRDTQ---AKLGSRLVELLIETAYVQHPVNPADYSPPDVRPAFRHRFKTILKHPGQ 410
W + A +G R +E LIE++ + VR I +
Sbjct: 196 WSDWDNEDPTIIAHIGLRCIEALIESSGL-------------VR---------ITRRSAG 233
Query: 411 KTTKRYGVVECDPLVLEGLDRSAKHML---IPYVPMLVPPKKWKGYNKGGYLF---LPSY 464
+ V+E +P +E L++ A + + P +VPP+ W GGY P+
Sbjct: 234 NVKEDCNVLELEPQWVEMLNQRAFTLAGVNTYHQPCVVPPRPWTRPVGGGYWGKGRRPTR 293
Query: 465 VMRTHGSRKQQEALKSVTGNCMKKVFEALDTLGSTKWRVNKQVLSVLESIWVSGGN--IA 522
+R H + AL+ M+ V++A++ +T W +NK++L V E++ S N I+
Sbjct: 294 FIRVHNKK----ALERYRDVDMEAVYKAVNIAQNTAWSINKRILEVAEAL-ASWTNVPIS 348
Query: 523 GLVDRNDVLIPEKPLSEDMTEVQK--WKWSVRKAKKINQERHSQRCDTELKLSVARRMKD 580
+P KP + E + WK + R S+R E L AR+ D
Sbjct: 349 KWPKAETQELPVKPHDIETNEEARNAWKKQASGVYRSESSRVSRRMSLETTLETARKFAD 408
Query: 581 EEGFYYPHNLDFRGRAYPMHPHLNHLSSDVCRGVLEFAEGRPLGKSGLRWLKIHLANLFS 640
E Y+PHNLD+RGR Y + P N D+ +G+L+ ++G P+G+ G++WL IH AN +
Sbjct: 409 FEAIYFPHNLDWRGRVYAL-PVFNPQRDDLTKGLLQASKGEPVGEDGIKWLMIHGAN--T 465
Query: 641 GGVEKLSHDGRLAFVENHLYEIFDSAENPINGSRWWLTAEDPFQCLAACINLSEALKSSS 700
GV+K+ D R +V ++ I AE+P+ + W ++ + PF LA C + +K
Sbjct: 466 AGVDKVPFDERQQWVRDNERTILQCAEDPLTHTEW-MSMDSPFCFLAFCFEWAGVVKDGP 524
Query: 701 PHSVISHLPIHQDGSCNGLQHYAALGRNTLEAAAVNLVAGEKPADVYSEIAVRVHEIMKR 760
H +S LPI DGSC+G+QH++A+ R+ AVNL+ E+ D+Y ++ V+ ++
Sbjct: 525 NH--VSALPIAFDGSCSGIQHFSAMLRDETGGRAVNLLPSERVQDIYRLVSDGVNAALRD 582
Query: 761 DS--NKDPSKH-----------------PQALLAKILIDQVDRKLVKQTVMTSVYGVTFV 801
D+ D S + L A L VDR + K++VMT YG
Sbjct: 583 DAVHGTDDSTDVHVDEKTGEITERRVLGTRTLAAAWLAHGVDRSVTKRSVMTLAYGSKEF 642
Query: 802 GAREQIKRRL----EEKGHITDDRQLFAAACYAAKVTLTALGEIFEAARSIMGWLGDCAK 857
G +Q++ + + G + + Q AA Y A + ++G+ AA M WL AK
Sbjct: 643 GFTDQVRDDIITPAVDAGSL-NFPQPQQAARYMAHLIWVSVGKTVVAAVEAMEWLQKSAK 701
Query: 858 VIAS---------------ENQPVRWTTPLGLPVVQPYCKNERHLI--------RTSLQV 894
++A+ PV W TP G PV Q Y + I R + V
Sbjct: 702 LLAAIVKEKKGPEKGKILKPAMPVYWVTPDGFPVWQEYRVQQAKRIDMILMGDVRLTATV 761
Query: 895 LALQREGNLVKIRKQRTAFPPNFVHSLDGSHMMMTAVACRDA 936
L Q + + RKQ + PNFVHS+DG+H+ T V DA
Sbjct: 762 LHQQDQ---IDARKQESGISPNFVHSMDGNHLRQTVVHAHDA 800
>gi|119637750|ref|YP_918986.1| RNA polymerase [Yersinia phage Berlin]
gi|119391781|emb|CAJ70654.1| hypothetical protein [Yersinia phage Berlin]
gi|312436348|gb|ADQ83157.1| RNA polymerase [Yersinia phage Yep-phi]
Length = 883
Score = 239 bits (611), Expect = 4e-60, Method: Compositional matrix adjust.
Identities = 210/705 (29%), Positives = 334/705 (47%), Gaps = 106/705 (15%)
Query: 286 AVHIGMAIEQEIRIHSFL-EKTKNYKRKKIIADTEEVLSKEKELLRKRVNSLIKSKRVME 344
A IG +IE E+R E+ K++K +E L+K ++ K+ ++++
Sbjct: 139 ATKIGRSIEDELRFGRIRDEEAKHFKNH-----VQEALNKRVGIVYKKAFMQAVEGKMLD 193
Query: 345 AQKLLKNEETKPWGRDTQAKLGSRLVELLI-ETAYVQHPVNPADYSPPDVRPAFRHR-FK 402
A +L T W + +G R++ELLI T V+ HR F
Sbjct: 194 AGQLQTKWTT--WTPEEVIHVGVRMLELLIGSTGLVE-----------------LHRPFA 234
Query: 403 TILKHPGQ--KTTKRYGVVECDPLVLEGLDRSAKHM--LIP-YVPMLVPPKKWKGYNKGG 457
++ G+ + T++Y ++ L + A + + P Y P +VPPK W GG
Sbjct: 235 GNIEKDGEYIQLTEQY---------VDLLSKRAGALAAIAPMYQPCVVPPKPWTSPVGGG 285
Query: 458 YLFL---PSYVMRTHGSRKQQEALKSVTGNCMKKVFEALDTLGSTKWRVNKQVLSVLESI 514
Y P ++RT GS+K E V M +V++A++ +T W++NK+VL+V+ I
Sbjct: 286 YWAAGRKPLSMVRT-GSKKGLERYNDV---YMPEVYKAVNIAQNTPWKINKKVLAVVNEI 341
Query: 515 --WVSGGNIAGLVDRNDVLIPEKPLSEDMTE--VQKWKWSVRKAKKINQERHSQRCDTEL 570
W +A + +P KP+ D E ++ WK + + + R S+R E
Sbjct: 342 VNW-KHCPVADVPAMERGELPVKPVDIDTNEASLKAWKKAASAIYRKEKARVSRRMSMEF 400
Query: 571 KLSVARRMKDEEGFYYPHNLDFRGRAYPMHPHLNHLSSDVCRGVLEFAEGRPLGKSGLRW 630
L A + + ++P N+D+RGR Y + P N +D+ +G+L A+G+P+G G W
Sbjct: 401 MLGQANKFAQFKAIWFPMNMDWRGRVYAV-PMFNPQGNDMTKGLLTLAKGKPIGVDGFYW 459
Query: 631 LKIHLANLFSGGVEKLSHDGRLAFVENHLYEIFDSAENPINGSRWWLTAEDPFQCLAACI 690
LKIH AN + GV+K+ R+ F+E++ I A +PI + WW + PF LA C
Sbjct: 460 LKIHGAN--TAGVDKVDFAERIKFIEDNHENIMSVAADPI-ANTWWTEQDSPFCFLAFCF 516
Query: 691 NLSEALKSSSPHSVISHLPIHQDGSCNGLQHYAALGRNTLEAAAVNLVAGEKPADVYSEI 750
+ ++ LP+ DGSC+G+QH++A+ R+ + AVNL+ ++ D+Y +
Sbjct: 517 EYAGVQHHGMNYNC--SLPLAFDGSCSGIQHFSAMLRDEVGGRAVNLLPSKEVQDIYRIV 574
Query: 751 AVRVHEIMKRD------------SNKDPSK-------HPQALLAKILIDQVDRKLVKQTV 791
A RV+EI+ +D +NKD + + L + L V RK+ K++V
Sbjct: 575 AERVNEILNQDVINGTDNEVETLTNKDTGEITEKLKLGTKELAGQWLAYGVTRKVTKRSV 634
Query: 792 MTSVYGVTFVGAREQIKRRLEE--KGHITDDRQLF-----AAACYAAKVTLTALGEIFEA 844
MT YG G R+Q+ LE+ + I D + L AA Y AK+ A+ A
Sbjct: 635 MTLAYGSKEYGFRDQV---LEDTIQPAIDDGKGLMFTQPNQAAGYMAKLIWNAVTVTVVA 691
Query: 845 ARSIMGWLGDCAKVIASENQ------------PVRWTTPLGLPVVQPYCK------NERH 886
A M WL AK++A+E + V W TP G PV Q Y K N
Sbjct: 692 AVEAMNWLKSAAKLLAAEVKDKKTKEVLRNRCAVYWVTPDGFPVWQEYRKPVQTRLNLMF 751
Query: 887 LIRTSLQVLALQREGNLVKIRKQRTAFPPNFVHSLDGSHMMMTAV 931
L + LQ + + + RKQ + PNFVHS+DGSH+ MT V
Sbjct: 752 LGQIRLQPTVNTNKDSGIDARKQESGIAPNFVHSMDGSHLRMTVV 796
>gi|414090089|ref|YP_006990207.1| DNA-directed RNA polymerase [Stenotrophomonas phage IME15]
gi|409995511|gb|AFV51444.1| DNA-directed RNA polymerase [Stenotrophomonas phage IME15]
Length = 883
Score = 239 bits (611), Expect = 4e-60, Method: Compositional matrix adjust.
Identities = 221/820 (26%), Positives = 361/820 (44%), Gaps = 121/820 (14%)
Query: 178 LRRRQVKQETEAWERMVDEYKEL-EAKMIEKRLAPN----------LPHIKGLFLGWFGP 226
L R Q+ E EA+E ++++ E ++ +A N LP + WF
Sbjct: 32 LAREQLALEHEAYEMGEARFRKIFERQLKAGEVADNAAAKPLVATLLPKMIERIHAWF-- 89
Query: 227 LSEAIEREQKMQRTKKQKAAYAPHIELLPADKVAVIVMHKMMGLVMAGHEDRCVQVVQAA 286
E+ + K+ A+ E+ P + +A I + ++G + + E VQ +A
Sbjct: 90 -------EEVSAKRGKRPTAFKFLQEVKP-EAIAYITIKTVLGTLTSA-EQTTVQAAASA 140
Query: 287 VHIGMAIEQEIRIHSFLEKTKNYKRKKIIADTEEVLSKEKELLRKRVNSLIKSK--RVME 344
V G AIE E R + + +K + +E L KRV + K +V+E
Sbjct: 141 V--GRAIEDEARFGRIRDLEAKHFKKNV-----------EEQLNKRVGHVYKKAFLQVVE 187
Query: 345 A----QKLLKNEETKPWGRDTQAKLGSRLVELLIE-TAYVQHPVNPADYSPPDVRPAFRH 399
A + L+ E W ++ +G R +E+LIE T V A D
Sbjct: 188 ADMLSKGLMGGEAWSSWHKEDSIHVGVRCIEMLIEATGLVVLERQNAGVVGADAET---- 243
Query: 400 RFKTILKHPGQKTTKRYGVVECDPLVLEGLDRSAKHMLIPYVPMLVPPKKWKGYNKGGYL 459
++ T+ + P+ Y P +VPPK W GGY
Sbjct: 244 -LSLASEYADAIATRAGALAGISPM---------------YQPCVVPPKPWTTVTGGGYW 287
Query: 460 F---LPSYVMRTHGSRKQQEALKSVTGNCMKKVFEALDTLGSTKWRVNKQVLSVLESI-- 514
P ++RTHG + AL M +V++A++ ST W++NK+VL+V I
Sbjct: 288 ANGRRPLALVRTHGKK----ALMRYEDVYMPEVYKAVNLAQSTAWKINKKVLAVANEITK 343
Query: 515 W--VSGGNIAGLVDRNDVLIPEKPLSEDMTEVQKWKWSVRKAKKINQERHSQRCDTELKL 572
W +I ++R ++ + + E+ + WK + + ++ R S+R E L
Sbjct: 344 WKHCPVEDIPA-IEREELPVKPDDIDENPEALTNWKRAAAAVYRKDKARKSRRLSLEFML 402
Query: 573 SVARRMKDEEGFYYPHNLDFRGRAYPMHPHLNHLSSDVCRGVLEFAEGRPLGKSGLRWLK 632
A + + + ++P+N+D+RGR Y + N +D+ +G+L A+G+ +GK G WLK
Sbjct: 403 EQANKFANHKAIWFPYNMDWRGRVYAV-SMFNPQGNDMTKGLLTLAKGKAIGKEGFYWLK 461
Query: 633 IHLANLFSGGVEKLSHDGRLAFVENHLYEIFDSAENPINGSRWWLTAEDPFQCLAACINL 692
IH AN GV+K+ R+ F+E++ I SA+NP+ + WW + PF LA C
Sbjct: 462 IHGAN--CAGVDKVPFPERIKFIEDNHEHIMASAKNPLEYT-WWAEQDSPFCFLAFCFEY 518
Query: 693 SEALKSSSPHSVISHLPIHQDGSCNGLQHYAALGRNTLEAAAVNLVAGEKPADVYSEIAV 752
+ + ++ LP+ DGSC+G+QH++A+ R+ + AVNL+ E D+Y +A
Sbjct: 519 AGVMHHGLSYNC--SLPLAFDGSCSGIQHFSAMLRDEVGGRAVNLLPSETVQDIYGIVAK 576
Query: 753 RVHEIMKRD------------SNKDPSK-------HPQALLAKILIDQVDRKLVKQTVMT 793
+V+EIM+RD ++K + + L + L +R + K++VMT
Sbjct: 577 KVNEIMQRDVISGTDDELVTETDKTTGEITEKAVLGTRTLAGQWLAYGANRSVTKRSVMT 636
Query: 794 SVYGVTFVGAREQIKRRLEEKGHITDDRQLFA----AACYAAKVTLTALGEIFEAARSIM 849
YG G R+Q+ + +F AA Y AK+ ++ AA M
Sbjct: 637 LAYGSKEFGFRQQVLEDTIRPAIDSGKGLMFTIPNQAAGYMAKLIWDSVSVTVVAAVEAM 696
Query: 850 GWLGDCAKVIASENQ------------PVRWTTPLGLPVVQPYCK------NERHLIRTS 891
WL AK++A+E + V W TP G PV Q Y K N L +
Sbjct: 697 KWLQSAAKLLAAEVKDKKTGEVLRNRCAVHWVTPDGFPVWQEYRKPLQTRLNLMFLGQFR 756
Query: 892 LQVLALQREGNLVKIRKQRTAFPPNFVHSLDGSHMMMTAV 931
LQ + + + KQ + PNFVHS DGSH+ T V
Sbjct: 757 LQPTINTNKDSGIDAHKQESGIAPNFVHSQDGSHLRKTVV 796
>gi|355755256|gb|EHH59003.1| DNA-directed RNA polymerase, mitochondrial [Macaca fascicularis]
Length = 1119
Score = 239 bits (609), Expect = 7e-60, Method: Compositional matrix adjust.
Identities = 120/279 (43%), Positives = 177/279 (63%), Gaps = 15/279 (5%)
Query: 671 NGSRWWLTAEDPFQCLAACINLSEALKSSSPHSVISHLPIHQDGSCNGLQHYAALGRNTL 730
G +WW+ AE+P+Q LA C+ ++ A++ S P + +SHLP+HQDGSCNGLQHYAALGR+++
Sbjct: 764 QGRKWWMGAEEPWQTLACCMEVANAVRCSDPAAYVSHLPVHQDGSCNGLQHYAALGRDSV 823
Query: 731 EAAAVNLVAGEKPADVYSEIAVRVHEIMKRDSNKDPSKHPQALLAKILIDQVDRKLVKQT 790
AA+VNL + P DVYS +A +V ++D+ + +A++L + RK+VKQT
Sbjct: 824 GAASVNLEPSDVPQDVYSGVAAQVEVFRRQDAQRG------TRVAQMLEGFITRKVVKQT 877
Query: 791 VMTSVYGVTFVGAREQIKRRLEEKGHITDDRQLFA--AACYAAKVTLTALGEIFEAARSI 848
VMT VYGVT G R QI++RL E +TD Q F A+ Y + +L E+F R+I
Sbjct: 878 VMTVVYGVTRYGGRLQIEKRLRE---LTDFPQEFVWEASHYLVRQVFKSLQEMFSGTRAI 934
Query: 849 MGWLGDCAKVIASENQPVRWTTPLGLPVVQPY-CKNERHLIRTSLQVLALQREGNLVK-- 905
WL + A++I+ V W TPLG+P++QPY +++ +R +Q + G++ +
Sbjct: 935 QHWLTESARLISHMGSVVEWVTPLGIPIIQPYRLEHKVKQVRGGIQSITYTHNGDISQKP 994
Query: 906 -IRKQRTAFPPNFVHSLDGSHMMMTAVACRDAGLHFAGL 943
RKQ+ FPPNF+HSLD SHMM+TA+ C GL F +
Sbjct: 995 NTRKQKNGFPPNFIHSLDSSHMMLTALHCYRKGLTFVSV 1033
Score = 67.8 bits (164), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 43/169 (25%), Positives = 83/169 (49%), Gaps = 12/169 (7%)
Query: 355 KPWGRDTQAKLGSRLVELLIETAYVQHPVNPADYSPPDVRPAFRHRFKTILKHPGQKTTK 414
+PW Q +LG +L E+L++ + ++ + + P H + + +
Sbjct: 547 QPWPLPVQMELGKQLAEMLVQATRMPSSLD-NRHGSSRLVPVLYHVYSF-------RNVQ 598
Query: 415 RYGVVECDPLVLEGLDRSAKHMLI---PYVPMLVPPKKWKGYNKGGYLFLPSYVMRT-HG 470
+ G+++ P ++ L+ +A+ L VPML PP W + G +L P+ +MRT G
Sbjct: 599 QIGILKPHPAYVQLLETAAEPTLTFEAVDVPMLCPPLPWTSPHTGAFLLSPTKLMRTVEG 658
Query: 471 SRKQQEALKSVTGNCMKKVFEALDTLGSTKWRVNKQVLSVLESIWVSGG 519
+ + QE L++ + +AL LG+ WRVN +VL ++ ++ + G
Sbjct: 659 ATQHQELLETCPPTALHGALDALTQLGNCAWRVNGRVLDLVLQLFQAKG 707
>gi|397502338|ref|XP_003821818.1| PREDICTED: DNA-directed RNA polymerase, mitochondrial [Pan paniscus]
Length = 1273
Score = 238 bits (608), Expect = 1e-59, Method: Compositional matrix adjust.
Identities = 121/282 (42%), Positives = 178/282 (63%), Gaps = 15/282 (5%)
Query: 668 NPINGSRWWLTAEDPFQCLAACINLSEALKSSSPHSVISHLPIHQDGSCNGLQHYAALGR 727
+P G +WW+ AE+P+Q LA C+ ++ A+++S P + +SHLP+HQDGSCNGLQHYAALGR
Sbjct: 916 SPTCGRKWWMGAEEPWQTLACCMEVANAVRASDPAAYVSHLPVHQDGSCNGLQHYAALGR 975
Query: 728 NTLEAAAVNLVAGEKPADVYSEIAVRVHEIMKRDSNKDPSKHPQALLAKILIDQVDRKLV 787
+++ AA+VNL + P DVYS +A +V ++D+ + +A++L + RK+V
Sbjct: 976 DSVGAASVNLEPSDVPQDVYSGVAAQVEVFRRQDAQRG------MRVAQVLEGFITRKVV 1029
Query: 788 KQTVMTSVYGVTFVGAREQIKRRLEEKGHITDDRQLFA--AACYAAKVTLTALGEIFEAA 845
KQTVMT VYGVT G R QI++RL E ++D Q F A+ Y + +L E+F
Sbjct: 1030 KQTVMTVVYGVTRYGGRLQIEKRLRE---LSDFPQEFVWEASHYLVRQVFKSLQEMFSGT 1086
Query: 846 RSIMGWLGDCAKVIASENQPVRWTTPLGLPVVQPYCKNER-HLIRTSLQVLALQREGNLV 904
R+I WL + A++I+ V W TPLG+PV+QPY + + I +Q + G++
Sbjct: 1087 RAIQHWLTESARLISHMGSVVEWVTPLGVPVIQPYRLDSKVKQIGGGIQSITYTHNGDIS 1146
Query: 905 K---IRKQRTAFPPNFVHSLDGSHMMMTAVACRDAGLHFAGL 943
+ RKQ+ FPPNF+HSLD SHMM+TA+ C GL F +
Sbjct: 1147 RKPNTRKQKNGFPPNFIHSLDSSHMMLTALHCYRKGLTFVSV 1188
Score = 163 bits (413), Expect = 4e-37, Method: Compositional matrix adjust.
Identities = 116/400 (29%), Positives = 191/400 (47%), Gaps = 30/400 (7%)
Query: 249 PHIELLPADKVAVIVMHKMMGLVMAGHEDRCVQVVQAAVHIGMAIEQEIRIHSFLEKTKN 308
P + LL +V +++ + L G + +A + Q R+ ++ +N
Sbjct: 469 PFLCLLDEREVVRMLLQILQALPAQGESFTTLARELSARTFSRHVVQRQRVSGQVQALQN 528
Query: 309 YKRKKIIADTEEVLSKEKELLRKRVNSLIKSKRVMEAQKLLKNEETKPWGRDTQAKLGSR 368
+ RK + + E L R+ +L + + E +PW Q +LG
Sbjct: 529 HYRKYLCLLASDAEVPEPCLPRQYWEALGAPEALRE----------QPWPLPVQMELGKL 578
Query: 369 LVELLIETAYVQHPVNPADYSPPDVRPAFRHRFKTILKHPGQ-KTTKRYGVVECDPLVLE 427
L E+L++ + ++ +P R +L H + ++ G+++ P ++
Sbjct: 579 LAEMLVQATQMPCSLD---------KPHRSSRLVPVLYHVYSFRNVQQIGILKPHPAYVQ 629
Query: 428 GLDRSAKHMLI---PYVPMLVPPKKWKGYNKGGYLFLPSYVMRT-HGSRKQQEALKSVTG 483
L+++A+ L VPML PP W + G +L P+ +MRT G+ + QE L++
Sbjct: 630 LLEKAAEPTLTFEAVDVPMLCPPLPWTSPHSGAFLLSPTKLMRTVEGATQHQELLETCPP 689
Query: 484 NCMKKVFEALDTLGSTKWRVNKQVLSVLESIWVSGGNIAGLVDRNDVLIPEKP---LSED 540
+ +AL LG+ WRVN +VL ++ ++ + G V P+ P L
Sbjct: 690 TALHGALDALTQLGNCAWRVNGRVLDLVLQLFQAKGCPQLGVPAPPSEAPQPPEAHLPHS 749
Query: 541 MTEVQK--WKWSVRKAKKINQERHSQRCDTELKLSVARRMKDEEGFYYPHNLDFRGRAYP 598
+K + V +K+ +E HS R + +LS+A+ ++D F+ PHN+DFRGR YP
Sbjct: 750 AAPARKAELRREVVHCQKVAREMHSLRAEALYRLSLAQHLRDRV-FWLPHNMDFRGRTYP 808
Query: 599 MHPHLNHLSSDVCRGVLEFAEGRPLGKSGLRWLKIHLANL 638
PH NHL SDV R +LEFA+GRPLG GL WLKIHL NL
Sbjct: 809 CPPHFNHLGSDVARALLEFAQGRPLGPHGLDWLKIHLVNL 848
>gi|211939287|pdb|3E2E|A Chain A, Crystal Structure Of An Intermediate Complex Of T7 Rnap
And 7nt Of Rna
gi|211939296|pdb|3E3J|C Chain C, Crystal Structure Of An Intermediate Complex Of T7 Rnap
And 8nt Of Rna
gi|211939297|pdb|3E3J|B Chain B, Crystal Structure Of An Intermediate Complex Of T7 Rnap
And 8nt Of Rna
Length = 889
Score = 238 bits (608), Expect = 1e-59, Method: Compositional matrix adjust.
Identities = 229/827 (27%), Positives = 365/827 (44%), Gaps = 135/827 (16%)
Query: 178 LRRRQVKQETEAWERMVDEYKELEAKMIEKRL--------APNLPHIKGLFLGWFGPLSE 229
L R Q+ E E++E ++ KM E++L A P I L +++
Sbjct: 38 LAREQLALEHESYEMGEARFR----KMFERQLKAGEVADNAAAKPLITTLLPKMIARIND 93
Query: 230 AIEREQKMQRTKKQKAAYAPHIELLPADKVAVIVMHKMMGLVMAGHEDRCVQVVQAAVHI 289
E E K +R K+ A ++ + + VA I + + + + ++ VQ V +A I
Sbjct: 94 WFE-EVKAKRGKRPTAF--QFLQEIKPEAVAYITIKTTLACLTSA-DNTTVQAVASA--I 147
Query: 290 GMAIEQEIRIHSFLEKTKNYKRKKIIADTEEVLSKEKELLRKRVNSLIKSK--RVMEA-- 345
G AIE E R + + +K + +E L KRV + K +V+EA
Sbjct: 148 GRAIEDEARFGRIRDLEAKHFKKNV-----------EEQLNKRVGHVYKKAFMQVVEADM 196
Query: 346 --QKLLKNEETKPWGRDTQAKLGSRLVELLIE-TAYVQ-HPVNPA----DYSPPDVRPAF 397
+ LL E W ++ +G R +E+LIE T V H N D ++ P +
Sbjct: 197 LSKGLLGGEAWSSWHKEDSIHVGVRCIEMLIESTGMVSLHRQNAGVVGQDSETIELAPEY 256
Query: 398 RHRFKTILKHPGQKTTKRYGVVECDPLVLEGLDRSAKHMLIPYVPMLVPPKKWKGYNKGG 457
T R G + L+ + P +VPPK W G GG
Sbjct: 257 AEAIAT-----------RAGALAGISLMFQ--------------PCVVPPKPWTGITGGG 291
Query: 458 YLF---LPSYVMRTHGSRKQQEALKSVTGNCMKKVFEALDTLGSTKWRVNKQVLSVLESI 514
Y P ++RTH + AL M +V++A++ +T W++NK+VL+V I
Sbjct: 292 YWANGRRPLALVRTHSKK----ALMRYEDVYMPEVYKAINIAQNTAWKINKKVLAVANVI 347
Query: 515 --W--VSGGNIAGLVDRNDVLIPEKPLSEDMT--EVQKWKWSVRKAKKINQERHSQRCDT 568
W +I ++R + +P KP DM + WK + + ++ R S+R
Sbjct: 348 TKWKHCPVEDIPA-IEREE--LPMKPEDIDMNPEALTAWKRAAAAVYRKDKARKSRRISL 404
Query: 569 ELKLSVARRMKDEEGFYYPHNLDFRGRAYPMHPHLNHLSSDVCRGVLEFAEGRPLGKSGL 628
E L A + + + ++P+N+D+RGR Y + N +D+ +G+L A+G+P+GK G
Sbjct: 405 EFMLEQANKFANHKAIWFPYNMDWRGRVYAV-SMFNPQGNDMTKGLLTLAKGKPIGKEGY 463
Query: 629 RWLKIHLANLFSGGVEKLSHDGRLAFVENHLYEIFDSAENPINGSRWWLTAEDPFQCLAA 688
WLKIH AN GV+K+ R+ F+E + I A++P+ + WW + PF LA
Sbjct: 464 YWLKIHGAN--CAGVDKVPFPERIKFIEENHENIMACAKSPLENT-WWAEQDSPFCFLAF 520
Query: 689 CINLSEALKSSSPHSVISH---LPIHQDGSCNGLQHYAALGRNTLEAAAVNLVAGEKPAD 745
C + H +S+ LP+ DGSC+G+QH++A+ R+ + AVNL+ E D
Sbjct: 521 CFEYA-----GVQHHGLSYNCSLPLAFDGSCSGIQHFSAMLRDEVGGRAVNLLPSETVQD 575
Query: 746 VYSEIAVRVHEIMKRDSNKDPSKH-------------------PQALLAKILIDQVDRKL 786
+Y +A +V+EI++ D+ +AL + L V R +
Sbjct: 576 IYGIVAKKVNEILQADAINGTDNEVVTVTDENTGEISEKVKLGTKALAGQWLAYGVTRSV 635
Query: 787 VKQTVMTSVYGVTFVGAREQIKRRLEEKGHITDDRQLFA----AACYAAKVTLTALGEIF 842
K++VMT YG G R+Q+ + + +F AA Y AK+ ++
Sbjct: 636 TKRSVMTLAYGSKEFGFRQQVLEDTIQPAIDSGKGLMFTQPNQAAGYMAKLIWESVSVTV 695
Query: 843 EAARSIMGWLGDCAKVIASENQ------------PVRWTTPLGLPVVQPYCK------NE 884
AA M WL AK++A+E + V W TP G PV Q Y K N
Sbjct: 696 VAAVEAMNWLKSAAKLLAAEVKDKKTGEILRKRCAVHWVTPDGFPVWQEYKKPIQTRLNL 755
Query: 885 RHLIRTSLQVLALQREGNLVKIRKQRTAFPPNFVHSLDGSHMMMTAV 931
L + LQ + + + KQ + PNFVHS DGSH+ T V
Sbjct: 756 MFLGQFRLQPTINTNKDSEIDAHKQESGIAPNFVHSQDGSHLRKTVV 802
>gi|385304972|gb|EIF48971.1| mitochondrial rna polymerase [Dekkera bruxellensis AWRI1499]
Length = 450
Score = 238 bits (607), Expect = 1e-59, Method: Compositional matrix adjust.
Identities = 127/300 (42%), Positives = 180/300 (60%), Gaps = 23/300 (7%)
Query: 659 LYEIFDSAENPINGSRWWLTAEDPFQCLAACINLSEALKSSSPHSVISHLPIHQDGSCNG 718
+ EI DS E+P +G ++W+ A+ P+Q LA + L +A++ P +SH P+HQDG+CNG
Sbjct: 1 MNEIIDSVEHPFDGKKFWVEADHPWQFLATAMELKDAMELPDPTQFVSHQPVHQDGTCNG 60
Query: 719 LQHYAALGRNTLEAAAVNLVAGEKPADVYSEIAVRVHEIMKRDSNKDPSKHPQALLAKIL 778
LQHYAALG + A VNLV +KP+D+Y+ ++ V +++ D+ K P A + +
Sbjct: 61 LQHYAALGGDXEGAEHVNLVPNDKPSDIYTRVSKIVQQMVDEDAEKGV---PDARRTQNI 117
Query: 779 IDQVDRKLVKQTVMTSVYGVTFVGAREQIKRRLEEKGHITDDRQLFAAACYAAKVTLTAL 838
I RKLVKQTVMTSVYGVT+VGAR QI +RL+E D+ L + Y L A+
Sbjct: 118 I---TRKLVKQTVMTSVYGVTYVGARAQIVKRLKEIDF--DEDHLSDCSAYLTDKVLKAI 172
Query: 839 GEIFEAARSIMGWLGDCAKVIASENQ-------------PVRWTTPLGLPVVQPYCKNER 885
++F+ A +I WL AK I+ + V WT+PLGLPVVQPY K +
Sbjct: 173 RKLFDGAHAIQDWLALAAKRISKSIRLDIDVNDXTEYISSVIWTSPLGLPVVQPYRKFKS 232
Query: 886 HLIRTSLQVLALQREGNLVKI--RKQRTAFPPNFVHSLDGSHMMMTAVACRDAGLHFAGL 943
I T+LQ + + + K+ RKQ FPPNFVHSLD +HM+M+ CR+ GL F+ +
Sbjct: 233 RQIHTNLQTMVINDPYEIKKVDARKQAQGFPPNFVHSLDATHMLMSVNRCREHGLSFSSV 292
>gi|426386358|ref|XP_004059652.1| PREDICTED: DNA-directed RNA polymerase, mitochondrial-like [Gorilla
gorilla gorilla]
Length = 370
Score = 238 bits (607), Expect = 1e-59, Method: Compositional matrix adjust.
Identities = 122/287 (42%), Positives = 182/287 (63%), Gaps = 17/287 (5%)
Query: 665 SAENPIN--GSRWWLTAEDPFQCLAACINLSEALKSSSPHSVISHLPIHQDGSCNGLQHY 722
+A +P++ G +WW+ AE+P+Q LA C+ ++ A+++S P + +SHLP+HQDGSCNGLQHY
Sbjct: 48 TAPHPLSPQGRKWWMGAEEPWQTLACCMEVANAVRASDPAAYVSHLPVHQDGSCNGLQHY 107
Query: 723 AALGRNTLEAAAVNLVAGEKPADVYSEIAVRVHEIMKRDSNKDPSKHPQALLAKILIDQV 782
AALGR+++ AA+VNL + P DVYS +A +V ++D+ + +A++L +
Sbjct: 108 AALGRDSVGAASVNLEPSDVPQDVYSGVAAQVEVFRRQDAQRG------TRVAQVLEGFI 161
Query: 783 DRKLVKQTVMTSVYGVTFVGAREQIKRRLEEKGHITDDRQLFA--AACYAAKVTLTALGE 840
RK+VKQTVMT VYGVT G R QI++RL E ++D Q F A+ Y + +L E
Sbjct: 162 TRKVVKQTVMTVVYGVTRYGGRLQIEKRLRE---LSDFPQEFVWEASHYLVRQVFKSLQE 218
Query: 841 IFEAARSIMGWLGDCAKVIASENQPVRWTTPLGLPVVQPYCKNER-HLIRTSLQVLALQR 899
+F R+I WL + A++I+ V W TPLG+PV+QPY + + I +Q +
Sbjct: 219 MFSGTRAIQHWLTESARLISHTGSVVEWVTPLGVPVIQPYRLDSKVKQIGGGIQSITYTH 278
Query: 900 EGNLVK---IRKQRTAFPPNFVHSLDGSHMMMTAVACRDAGLHFAGL 943
G++ + RKQ+ FPPNF+HSLD SHMM+TA+ C GL F +
Sbjct: 279 NGDISRKPNTRKQKNGFPPNFIHSLDSSHMMLTALHCYRKGLTFVSV 325
>gi|3891671|pdb|1ARO|P Chain P, T7 Rna Polymerase Complexed With T7 Lysozyme
Length = 883
Score = 238 bits (607), Expect = 1e-59, Method: Compositional matrix adjust.
Identities = 227/823 (27%), Positives = 364/823 (44%), Gaps = 127/823 (15%)
Query: 178 LRRRQVKQETEAWERMVDEYKELEAKMIEKRL--------APNLPHIKGLFLGWFGPLSE 229
L R Q+ E E++E ++ KM E++L A P I L +++
Sbjct: 32 LAREQLALEHESYEMGEARFR----KMFERQLKAGEVADNAAAKPLITTLLPKMIARIND 87
Query: 230 AIEREQKMQRTKKQKAAYAPHIELLPADKVAVIVMHKMMGLVMAGHEDRCVQVVQAAVHI 289
E E K +R K+ A ++ + + VA I + + + + ++ VQ V +A I
Sbjct: 88 WFE-EVKAKRGKRPTAF--QFLQEIKPEAVAYITIKTTLACLTSA-DNTTVQAVASA--I 141
Query: 290 GMAIEQEIRIHSFLEKTKNYKRKKIIADTEEVLSKEKELLRKRVNSLIKSK--RVMEA-- 345
G AIE E R + + +K + +E L KRV + K +V+EA
Sbjct: 142 GRAIEDEARFGRIRDLEAKHFKKNV-----------EEQLNKRVGHVYKKAFMQVVEADM 190
Query: 346 --QKLLKNEETKPWGRDTQAKLGSRLVELLIETAYVQHPVNPADYSPPDVRPAFRHRFKT 403
+ LL E W ++ +G R +E+LIE+ + R
Sbjct: 191 LSKGLLGGEAWSSWHKEDSIHVGVRCIEMLIEST--------------GMVSLHRQNAGV 236
Query: 404 ILKHPGQKTTKRYGVVECDPLVLEGLDRSAKHM--LIP-YVPMLVPPKKWKGYNKGGYLF 460
+ GQ + +E P E + A + + P + P +VPPK W G GGY
Sbjct: 237 V----GQDSE----TIELAPEYAEAIATRAGALAGISPMFQPCVVPPKPWTGITGGGYWA 288
Query: 461 ---LPSYVMRTHGSRKQQEALKSVTGNCMKKVFEALDTLGSTKWRVNKQVLSVLESI--W 515
P ++RTH + AL M +V++A++ +T W++NK+VL+V I W
Sbjct: 289 NGRRPLALVRTHSKK----ALMRYEDVYMPEVYKAINIAQNTAWKINKKVLAVANVITKW 344
Query: 516 V-SGGNIAGLVDRNDVLIPEKPLSEDMT--EVQKWKWSVRKAKKINQERHSQRCDTELKL 572
S ++R + +P KP DM + WK + + ++ R S+R E L
Sbjct: 345 KHSPVEDIPAIEREE--LPMKPEDIDMNPEALTAWKRAAAAVYRKDKARKSRRISLEFML 402
Query: 573 SVARRMKDEEGFYYPHNLDFRGRAYPMHPHLNHLSSDVCRGVLEFAEGRPLGKSGLRWLK 632
A + + + ++P+N+D+RGR Y + N +D+ +G+L A+G+P+GK G WLK
Sbjct: 403 EQANKFANHKAIWFPYNMDWRGRVYAVS-MFNPQGNDMTKGLLTLAKGKPIGKEGYYWLK 461
Query: 633 IHLANLFSGGVEKLSHDGRLAFVENHLYEIFDSAENPINGSRWWLTAEDPFQCLAACINL 692
IH AN GV+K+ R+ F+E + I A++P+ + WW + PF LA C
Sbjct: 462 IHGAN--CAGVDKVPFPERIKFIEENHENIMACAKSPLENT-WWAEQDSPFCFLAFCFEY 518
Query: 693 SEALKSSSPHSVISH---LPIHQDGSCNGLQHYAALGRNTLEAAAVNLVAGEKPADVYSE 749
+ H +S+ LP+ DGSC+G+QH++A+ R+ + AVNL+ E D+Y
Sbjct: 519 A-----GVQHHGLSYNCSLPLAFDGSCSGIQHFSAMLRDEVGGRAVNLLPSETVQDIYGI 573
Query: 750 IAVRVHEIMKRDSNKDPSKH-------------------PQALLAKILIDQVDRKLVKQT 790
+A +V+EI++ D+ +AL + L V R + K++
Sbjct: 574 VAKKVNEILQADAINGTDNEVVTVTDENTGEISEKVKLGTKALAGQWLAYGVTRSVTKRS 633
Query: 791 VMTSVYGVTFVGAREQIKRRLEEKGHITDDRQLFA----AACYAAKVTLTALGEIFEAAR 846
VMT YG G R+Q+ + + +F AA Y AK+ ++ AA
Sbjct: 634 VMTLAYGSKEFGFRQQVLEDTIQPAIDSGKGLMFTQPNQAAGYMAKLIWESVSVTVVAAV 693
Query: 847 SIMGWLGDCAKVIASE------------NQPVRWTTPLGLPVVQPYCK------NERHLI 888
M WL AK++A+E V W TP G PV Q Y K N L
Sbjct: 694 EAMNWLKSAAKLLAAEVKDKKTGEILRKRSAVHWVTPDGFPVWQEYKKPIQTRLNLMFLG 753
Query: 889 RTSLQVLALQREGNLVKIRKQRTAFPPNFVHSLDGSHMMMTAV 931
+ LQ + + + KQ + PNFVHS DGSH+ T V
Sbjct: 754 QFRLQPTINTNKDSEIDAHKQESGIAPNFVHSQDGSHLRKTVV 796
>gi|133450|sp|P18147.1|RPOL_BPK11 RecName: Full=DNA-directed RNA polymerase
gi|14985|emb|CAA37330.1| unnamed protein product [Enterobacteria phage K11]
Length = 906
Score = 238 bits (607), Expect = 1e-59, Method: Compositional matrix adjust.
Identities = 199/704 (28%), Positives = 333/704 (47%), Gaps = 104/704 (14%)
Query: 288 HIGMAIEQEIRIHSFLEKTKNYKRKKIIADTEEVLSKEKELLRKRVNSLIKSK--RVMEA 345
+G A+E E R E+ Y +K + + L KRV + K +V+EA
Sbjct: 160 QLGKALEDEARFGRIREQEAAYFKKNV-----------ADQLDKRVGHVYKKAFMQVVEA 208
Query: 346 ----QKLLKNEETKPWGRDTQAKLGSRLVELLIE-TAYVQHPVNPADYSPPDVRPAFRHR 400
+ +L + W D Q +G++L+ELLIE T V+ N DV
Sbjct: 209 DMISKGMLGGDNWASWKTDEQMHVGTKLLELLIEGTGLVEMTKNKMADGSDDV------- 261
Query: 401 FKTILKHPGQKTTKRYGVVECDPLVLEGLDRSAKHM--LIP-YVPMLVPPKKWKGYNKGG 457
T ++ +V+ P +E L + A + + P + P +VPPK W GG
Sbjct: 262 --TSMQ-----------MVQLAPAFVELLSKRAGALAGISPMHQPCVVPPKPWVETVGGG 308
Query: 458 YLFL---PSYVMRTHGSRKQQEALKSVTGNCMKKVFEALDTLGSTKWRVNKQVLSVLESI 514
Y + P ++RTH + AL+ M +V++A++ +T W+VNK+VL+V+ I
Sbjct: 309 YWSVGRRPLALVRTHSKK----ALRRYADVHMPEVYKAVNLAQNTPWKVNKKVLAVVNEI 364
Query: 515 --W--VSGGNIAGLVDRNDVLIPEKPLSEDMTEVQKWKWSVRKAK--KINQERHSQRCDT 568
W G++ ++R + +P +P D EV + W A + ++ R S+RC
Sbjct: 365 VNWKHCPVGDVPA-IEREE--LPPRPDDIDTNEVARKAWRKEAAAVYRKDKARQSRRCRC 421
Query: 569 ELKLSVARRMKDEEGFYYPHNLDFRGRAYPMHPHLNHLSSDVCRGVLEFAEGRPLGKSGL 628
E ++ A + + + ++P+N+D+RGR Y + N +D+ +G L A+G+P+G G
Sbjct: 422 EFMVAQANKFANHKAIWFPYNMDWRGRVYAV-SMFNPQGNDMTKGSLTLAKGKPIGLDGF 480
Query: 629 RWLKIHLANLFSGGVEKLSHDGRLAFVENHLYEIFDSAENPINGSRWWLTAEDPFQCLAA 688
WLKIH AN GV+K+ R+ F+E + I SA +P+N + WW + PF LA
Sbjct: 481 YWLKIHGAN--CAGVDKVPFPERIKFIEENEGNILASAADPLNNT-WWTQQDSPFCFLAF 537
Query: 689 CINLSEALKSSSPHSVISHLPIHQDGSCNGLQHYAALGRNTLEAAAVNLVAGEKPADVYS 748
C + ++ LP+ DGSC+G+QH++A+ R+++ AVNL+ + D+Y
Sbjct: 538 CFEYAGVKHHGLNYNC--SLPLAFDGSCSGIQHFSAMLRDSIGGRAVNLLPSDTVQDIYK 595
Query: 749 EIAVRVHEIM------------KRDSNKDPSKHPQ-------ALLAKILIDQVDRKLVKQ 789
+A +V+E++ ++ ++K+ + + L A+ L V RK+ K+
Sbjct: 596 IVADKVNEVLHQHAVNGSQTVVEQIADKETGEFHEKVTLGESVLAAQWLQYGVTRKVTKR 655
Query: 790 TVMTSVYGVTFVGAREQIKRRLEEKGHITDDRQLFA----AACYAAKVTLTALGEIFEAA 845
+VMT YG R+Q+ + + +F AA Y AK+ A+ AA
Sbjct: 656 SVMTLAYGSKESLVRQQVLEDTIQPAIDNGEGLMFTHPNQAAGYMAKLIWDAVTVTVVAA 715
Query: 846 RSIMGWLGDCAKVIASENQ------------PVRWTTPLGLPVVQPYCKNER------HL 887
M WL AK++A+E + + W TP G PV Q Y K + L
Sbjct: 716 VEAMNWLKSAAKLLAAEVKDKKTKEVLRKRCAIHWVTPDGFPVWQEYRKQNQARLKLVFL 775
Query: 888 IRTSLQVLALQREGNLVKIRKQRTAFPPNFVHSLDGSHMMMTAV 931
+ ++++ + + + KQ + PNFVHS DGSH+ MT V
Sbjct: 776 GQANVKMTYNTGKDSEIDAHKQESGIAPNFVHSQDGSHLRMTVV 819
>gi|216012|gb|AAA32569.1| RNA polymerase [Enterobacteria phage T7]
Length = 883
Score = 238 bits (606), Expect = 1e-59, Method: Compositional matrix adjust.
Identities = 227/824 (27%), Positives = 366/824 (44%), Gaps = 129/824 (15%)
Query: 178 LRRRQVKQETEAWERMVDEYKELEAKMIEKRL--------APNLPHIKGLFLGWFGPLSE 229
L R Q+ E E++E ++ KM E++L A P I L +++
Sbjct: 32 LAREQLALEHESYEMGEARFR----KMFERQLKAGEVADNAAAKPLITTLLPKMIARIND 87
Query: 230 AIEREQKMQRTKKQKAAYAPHIELLPADKVAVIVMHKMMGLVMAGHEDRCVQVVQAAVHI 289
E E K +R K+ A ++ + + VA I + + + + ++ VQ V +A I
Sbjct: 88 WFE-EVKAKRGKRPTAF--QFLQEIKPEAVAYITIKTTLACLTSA-DNTTVQAVASA--I 141
Query: 290 GMAIEQEIRIHSFLEKTKNYKRKKIIADTEEVLSKEKELLRKRVNSLIKSK--RVMEA-- 345
G AIE E R + + +K + +E L KRV + K +V+EA
Sbjct: 142 GRAIEDEARFGRIRDLEAKHFKKNV-----------EEQLNKRVGHVYKKAFMQVVEADM 190
Query: 346 --QKLLKNEETKPWGRDTQAKLGSRLVELLIETAYVQHPVNPADYSPPDVRPAFRHRFKT 403
+ LL E W ++ +G R +E+LIE+ + R
Sbjct: 191 LSKGLLGGEAWSSWHKEDSIHVGVRCIEMLIEST--------------GMVSLHRQNAGV 236
Query: 404 ILKHPGQKTTKRYGVVECDPLVLEGLDRSAKHM--LIP-YVPMLVPPKKWKGYNKGGYLF 460
+ GQ + +E P E + A + + P + P +VPPK W G GGY
Sbjct: 237 V----GQDSE----TIELAPEYAEAIATRAGALAGISPMFQPCVVPPKPWTGITGGGYWA 288
Query: 461 ---LPSYVMRTHGSRKQQEALKSVTGNCMKKVFEALDTLGSTKWRVNKQVLSVLESI--W 515
P ++RTH + AL M +V++A++ +T W++NK+VL+V I W
Sbjct: 289 NGRRPLALVRTHSKK----ALMRYEDVYMPEVYKAINIAQNTAWKINKKVLAVANVITKW 344
Query: 516 --VSGGNIAGLVDRNDVLIPEKPLSEDMT--EVQKWKWSVRKAKKINQERHSQRCDTELK 571
+I ++R + +P KP DM + WK + + ++ R S+R E
Sbjct: 345 KHCPVEDIPA-IEREE--LPMKPEDIDMNPEALTAWKRAAAAVYRKDRARKSRRISLEFM 401
Query: 572 LSVARRMKDEEGFYYPHNLDFRGRAYPMHPHLNHLSSDVCRGVLEFAEGRPLGKSGLRWL 631
L A + + + ++P+N+D+RGR Y + N +D+ +G+L A+G+P+GK G WL
Sbjct: 402 LEQANKFANHKAIWFPYNMDWRGRVYAVS-MFNPQGNDMTKGLLTLAKGKPIGKEGYYWL 460
Query: 632 KIHLANLFSGGVEKLSHDGRLAFVENHLYEIFDSAENPINGSRWWLTAEDPFQCLAACIN 691
KIH AN GV+K+ R+ F+E + I A++P+ + WW + PF LA C
Sbjct: 461 KIHGAN--CAGVDKVPFPERIKFIEENHENIMACAKSPLENT-WWAEQDSPFCFLAFCFE 517
Query: 692 LSEALKSSSPHSVISH---LPIHQDGSCNGLQHYAALGRNTLEAAAVNLVAGEKPADVYS 748
+ H +S+ LP+ DGSC+G+QH++A+ R+ + AVNL+ E D+Y
Sbjct: 518 YA-----GVQHHGLSYNCSLPLAFDGSCSGIQHFSAMLRDEVGGRAVNLLPSETVQDIYG 572
Query: 749 EIAVRVHEIMKRDSNKDPSKH-------------------PQALLAKILIDQVDRKLVKQ 789
+A +V+EI++ D+ +AL + L V R + K+
Sbjct: 573 IVAKKVNEILQADAINGTDNEVVTVTDENTGEISEKVKLGTKALAGQWLAHGVTRSVTKR 632
Query: 790 TVMTSVYGVTFVGAREQIKRRLEEKGHITDDRQLFA----AACYAAKVTLTALGEIFEAA 845
+VMT YG G R+Q+ + + +F AA Y AK+ ++ AA
Sbjct: 633 SVMTLAYGSKEFGFRQQVLEDTIQPAIDSGKGPMFTQPNQAAGYMAKLIWESVSVTVVAA 692
Query: 846 RSIMGWLGDCAKVIASENQ------------PVRWTTPLGLPVVQPYCK------NERHL 887
M WL AK++A+E + V W TP G PV Q Y K N L
Sbjct: 693 VEAMNWLKSAAKLLAAEVKDKKTGEILRKRCAVHWVTPDGFPVWQEYKKPIQTRLNLMFL 752
Query: 888 IRTSLQVLALQREGNLVKIRKQRTAFPPNFVHSLDGSHMMMTAV 931
+ LQ + + + KQ + PNFVHS DGSH+ T V
Sbjct: 753 GQFRLQPTINTNKDSEIDAHKQESGIAPNFVHSQDGSHLRKTVV 796
>gi|9627432|ref|NP_041960.1| T7 RNA polymerase [Enterobacteria phage T7]
gi|251784243|ref|YP_002998547.1| enterobacteria phage T7 RNA polymerase [Escherichia coli BL21(DE3)]
gi|253774277|ref|YP_003037108.1| DNA-directed RNA polymerase [Escherichia coli 'BL21-Gold(DE3)pLysS
AG']
gi|254287609|ref|YP_003053357.1| T7 DNA-directed RNA polymerase [Escherichia coli BL21(DE3)]
gi|12643995|sp|P00573.2|RPOL_BPT7 RecName: Full=DNA-directed RNA polymerase
gi|2781155|pdb|4RNP|A Chain A, Bacteriophage T7 Rna Polymerase, High Salt Crystal Form,
Low Temperature Data, Alpha-Carbons Only
gi|2781156|pdb|4RNP|B Chain B, Bacteriophage T7 Rna Polymerase, High Salt Crystal Form,
Low Temperature Data, Alpha-Carbons Only
gi|2781157|pdb|4RNP|C Chain C, Bacteriophage T7 Rna Polymerase, High Salt Crystal Form,
Low Temperature Data, Alpha-Carbons Only
gi|5107544|pdb|1CEZ|A Chain A, Crystal Structure Of A T7 Rna Polymerase-T7 Promoter
Complex
gi|7245970|pdb|1QLN|A Chain A, Structure Of A Transcribing T7 Rna Polymerase Initiation
Complex
gi|27065076|pdb|1H38|A Chain A, Structure Of A T7 Rna Polymerase Elongation Complex At
2.9a Resolution
gi|27065077|pdb|1H38|B Chain B, Structure Of A T7 Rna Polymerase Elongation Complex At
2.9a Resolution
gi|27065078|pdb|1H38|C Chain C, Structure Of A T7 Rna Polymerase Elongation Complex At
2.9a Resolution
gi|27065079|pdb|1H38|D Chain D, Structure Of A T7 Rna Polymerase Elongation Complex At
2.9a Resolution
gi|27065724|pdb|1MSW|D Chain D, Structural Basis For The Transition From Initiation To
Elongation Transcription In T7 Rna Polymerase
gi|46015618|pdb|1S0V|A Chain A, Structural Basis For Substrate Selection By T7 Rna
Polymerase
gi|46015619|pdb|1S0V|B Chain B, Structural Basis For Substrate Selection By T7 Rna
Polymerase
gi|46015620|pdb|1S0V|C Chain C, Structural Basis For Substrate Selection By T7 Rna
Polymerase
gi|46015621|pdb|1S0V|D Chain D, Structural Basis For Substrate Selection By T7 Rna
Polymerase
gi|47169080|pdb|1S76|D Chain D, T7 Rna Polymerase Alpha Beta Methylene Atp Elongation
Complex
gi|47169084|pdb|1S77|D Chain D, T7 Rnap Product Pyrophosphate Elongation Complex
gi|431189|emb|CAA24390.1| unnamed protein product [Enterobacteria phage T7]
gi|37956644|gb|AAP33914.1| gene 1 [Enterobacteria phage T7]
gi|45861229|gb|AAS78492.1| T7 RNA polymerase [Cloning vector pPRCG]
gi|45861242|gb|AAS78503.1| T7 RNA polymerase [Cloning vector pTCCR-Auto]
gi|71534851|gb|AAZ32820.1| protein 1 [Enterobacteria phage T7.1]
gi|125743113|gb|ABN54763.1| T7 RNA polymerase [Expression vector pR6K-lys-Gm]
gi|125743121|gb|ABN54770.1| T7 RNA polymerase [Expression vector pUC19-T7pol-lacI-lys]
gi|125743124|gb|ABN54772.1| T7 RNA polymerase [Expression vector pBT20-Dbla-T7pol]
gi|194021543|gb|ACF32352.1| T7 DNA-directed RNA polymerase [Enterobacteria phage DE3]
gi|226440714|gb|ACO57213.1| RNA polymerase [Enterobacteria phage T7]
gi|242376516|emb|CAQ31221.1| enterobacteria phage T7 RNA polymerase [Escherichia coli BL21(DE3)]
gi|253325321|gb|ACT29923.1| DNA-directed RNA polymerase [Escherichia coli 'BL21-Gold(DE3)pLysS
AG']
gi|253976916|gb|ACT42586.1| T7 DNA-directed RNA polymerase [Escherichia coli BL21(DE3)]
gi|265524972|gb|ACY75835.1| T7 RNA polymerase [Enterobacteria phage T7]
gi|283825308|gb|ADB43112.1| T7 RNA polymerase [Expression vector pCAGGS-T7]
gi|299008115|gb|ADJ00046.1| T7 RNA polymerase [T7RNA polymerase vector pGemT7cat]
gi|299008117|gb|ADJ00047.1| T7 RNA polymerase [Mariner mini-transposon delivery vector
pMaT7cat]
Length = 883
Score = 238 bits (606), Expect = 2e-59, Method: Compositional matrix adjust.
Identities = 227/824 (27%), Positives = 366/824 (44%), Gaps = 129/824 (15%)
Query: 178 LRRRQVKQETEAWERMVDEYKELEAKMIEKRL--------APNLPHIKGLFLGWFGPLSE 229
L R Q+ E E++E ++ KM E++L A P I L +++
Sbjct: 32 LAREQLALEHESYEMGEARFR----KMFERQLKAGEVADNAAAKPLITTLLPKMIARIND 87
Query: 230 AIEREQKMQRTKKQKAAYAPHIELLPADKVAVIVMHKMMGLVMAGHEDRCVQVVQAAVHI 289
E E K +R K+ A ++ + + VA I + + + + ++ VQ V +A I
Sbjct: 88 WFE-EVKAKRGKRPTAF--QFLQEIKPEAVAYITIKTTLACLTSA-DNTTVQAVASA--I 141
Query: 290 GMAIEQEIRIHSFLEKTKNYKRKKIIADTEEVLSKEKELLRKRVNSLIKSK--RVMEA-- 345
G AIE E R + + +K + +E L KRV + K +V+EA
Sbjct: 142 GRAIEDEARFGRIRDLEAKHFKKNV-----------EEQLNKRVGHVYKKAFMQVVEADM 190
Query: 346 --QKLLKNEETKPWGRDTQAKLGSRLVELLIETAYVQHPVNPADYSPPDVRPAFRHRFKT 403
+ LL E W ++ +G R +E+LIE+ + HR
Sbjct: 191 LSKGLLGGEAWSSWHKEDSIHVGVRCIEMLIESTGM----------------VSLHRQNA 234
Query: 404 ILKHPGQKTTKRYGVVECDPLVLEGLDRSAKHM--LIP-YVPMLVPPKKWKGYNKGGYLF 460
+ +T +E P E + A + + P + P +VPPK W G GGY
Sbjct: 235 GVVGQDSET------IELAPEYAEAIATRAGALAGISPMFQPCVVPPKPWTGITGGGYWA 288
Query: 461 ---LPSYVMRTHGSRKQQEALKSVTGNCMKKVFEALDTLGSTKWRVNKQVLSVLESI--W 515
P ++RTH + AL M +V++A++ +T W++NK+VL+V I W
Sbjct: 289 NGRRPLALVRTHSKK----ALMRYEDVYMPEVYKAINIAQNTAWKINKKVLAVANVITKW 344
Query: 516 --VSGGNIAGLVDRNDVLIPEKPLSEDMT--EVQKWKWSVRKAKKINQERHSQRCDTELK 571
+I ++R + +P KP DM + WK + + ++ R S+R E
Sbjct: 345 KHCPVEDIPA-IEREE--LPMKPEDIDMNPEALTAWKRAAAAVYRKDKARKSRRISLEFM 401
Query: 572 LSVARRMKDEEGFYYPHNLDFRGRAYPMHPHLNHLSSDVCRGVLEFAEGRPLGKSGLRWL 631
L A + + + ++P+N+D+RGR Y + N +D+ +G+L A+G+P+GK G WL
Sbjct: 402 LEQANKFANHKAIWFPYNMDWRGRVYAVS-MFNPQGNDMTKGLLTLAKGKPIGKEGYYWL 460
Query: 632 KIHLANLFSGGVEKLSHDGRLAFVENHLYEIFDSAENPINGSRWWLTAEDPFQCLAACIN 691
KIH AN GV+K+ R+ F+E + I A++P+ + WW + PF LA C
Sbjct: 461 KIHGAN--CAGVDKVPFPERIKFIEENHENIMACAKSPLENT-WWAEQDSPFCFLAFCFE 517
Query: 692 LSEALKSSSPHSVISH---LPIHQDGSCNGLQHYAALGRNTLEAAAVNLVAGEKPADVYS 748
+ H +S+ LP+ DGSC+G+QH++A+ R+ + AVNL+ E D+Y
Sbjct: 518 YA-----GVQHHGLSYNCSLPLAFDGSCSGIQHFSAMLRDEVGGRAVNLLPSETVQDIYG 572
Query: 749 EIAVRVHEIMKRDSNKDPSKH-------------------PQALLAKILIDQVDRKLVKQ 789
+A +V+EI++ D+ +AL + L V R + K+
Sbjct: 573 IVAKKVNEILQADAINGTDNEVVTVTDENTGEISEKVKLGTKALAGQWLAYGVTRSVTKR 632
Query: 790 TVMTSVYGVTFVGAREQIKRRLEEKGHITDDRQLFA----AACYAAKVTLTALGEIFEAA 845
+VMT YG G R+Q+ + + +F AA Y AK+ ++ AA
Sbjct: 633 SVMTLAYGSKEFGFRQQVLEDTIQPAIDSGKGLMFTQPNQAAGYMAKLIWESVSVTVVAA 692
Query: 846 RSIMGWLGDCAKVIASENQ------------PVRWTTPLGLPVVQPYCK------NERHL 887
M WL AK++A+E + V W TP G PV Q Y K N L
Sbjct: 693 VEAMNWLKSAAKLLAAEVKDKKTGEILRKRCAVHWVTPDGFPVWQEYKKPIQTRLNLMFL 752
Query: 888 IRTSLQVLALQREGNLVKIRKQRTAFPPNFVHSLDGSHMMMTAV 931
+ LQ + + + KQ + PNFVHS DGSH+ T V
Sbjct: 753 GQFRLQPTINTNKDSEIDAHKQESGIAPNFVHSQDGSHLRKTVV 796
>gi|385663996|gb|AFI71020.1| T7* RNAP [Cloning vector SBa_000560]
Length = 885
Score = 237 bits (605), Expect = 2e-59, Method: Compositional matrix adjust.
Identities = 227/824 (27%), Positives = 366/824 (44%), Gaps = 129/824 (15%)
Query: 178 LRRRQVKQETEAWERMVDEYKELEAKMIEKRL--------APNLPHIKGLFLGWFGPLSE 229
L R Q+ E E++E ++ KM E++L A P I L +++
Sbjct: 34 LAREQLALEHESYEMGEARFR----KMFERQLKAGEVADNAAAKPLITTLLPKMIARIND 89
Query: 230 AIEREQKMQRTKKQKAAYAPHIELLPADKVAVIVMHKMMGLVMAGHEDRCVQVVQAAVHI 289
E E K +R K+ A ++ + + VA I + + + + ++ VQ V +A I
Sbjct: 90 WFE-EVKAKRGKRPTAF--QFLQEIKPEAVAYITIKTTLACLTSA-DNTTVQAVASA--I 143
Query: 290 GMAIEQEIRIHSFLEKTKNYKRKKIIADTEEVLSKEKELLRKRVNSLIKSK--RVMEA-- 345
G AIE E R + + +K + +E L KRV + K +V+EA
Sbjct: 144 GRAIEDEARFGRIRDLEAKHFKKNV-----------EEQLNKRVGHVYKKAFMQVVEADM 192
Query: 346 --QKLLKNEETKPWGRDTQAKLGSRLVELLIETAYVQHPVNPADYSPPDVRPAFRHRFKT 403
+ LL E W ++ +G R +E+LIE+ + HR
Sbjct: 193 LSKGLLGGEAWSSWHKEDSIHVGVRCIEMLIESTGM----------------VSLHRQNA 236
Query: 404 ILKHPGQKTTKRYGVVECDPLVLEGLDRSAKHM--LIP-YVPMLVPPKKWKGYNKGGYLF 460
+ +T +E P E + A + + P + P +VPPK W G GGY
Sbjct: 237 GVVGQDSET------IELAPEYAEAIATRAGALAGISPMFQPCVVPPKPWTGITGGGYWA 290
Query: 461 ---LPSYVMRTHGSRKQQEALKSVTGNCMKKVFEALDTLGSTKWRVNKQVLSVLESI--W 515
P ++RTH + AL M +V++A++ +T W++NK+VL+V I W
Sbjct: 291 NGRRPLALVRTHSKK----ALMRYEDVYMPEVYKAINIAQNTAWKINKKVLAVANVITKW 346
Query: 516 --VSGGNIAGLVDRNDVLIPEKPLSEDMT--EVQKWKWSVRKAKKINQERHSQRCDTELK 571
+I ++R + +P KP DM + WK + + ++ R S+R E
Sbjct: 347 KHCPVEDIPA-IEREE--LPMKPEDIDMNPEALTAWKRAAAAVYRKDKARKSRRISLEFM 403
Query: 572 LSVARRMKDEEGFYYPHNLDFRGRAYPMHPHLNHLSSDVCRGVLEFAEGRPLGKSGLRWL 631
L A + + + ++P+N+D+RGR Y + N +D+ +G+L A+G+P+GK G WL
Sbjct: 404 LEQANKFANHKAIWFPYNMDWRGRVYAVS-MFNPQGNDMTKGLLTLAKGKPIGKEGYYWL 462
Query: 632 KIHLANLFSGGVEKLSHDGRLAFVENHLYEIFDSAENPINGSRWWLTAEDPFQCLAACIN 691
KIH AN GV+K+ R+ F+E + I A++P+ + WW + PF LA C
Sbjct: 463 KIHGAN--CAGVDKVPFPERIKFIEENHENIMACAKSPLENT-WWAEQDSPFCFLAFCFE 519
Query: 692 LSEALKSSSPHSVISH---LPIHQDGSCNGLQHYAALGRNTLEAAAVNLVAGEKPADVYS 748
+ H +S+ LP+ DGSC+G+QH++A+ R+ + AVNL+ E D+Y
Sbjct: 520 YA-----GVQHHGLSYNCSLPLAFDGSCSGIQHFSAMLRDEVGGRAVNLLPSETVQDIYG 574
Query: 749 EIAVRVHEIMKRDSNKDPSKH-------------------PQALLAKILIDQVDRKLVKQ 789
+A +V+EI++ D+ +AL + L V R + K+
Sbjct: 575 IVAKKVNEILQADAINGTDNEVVTVTDENTGEISEKVKLGTKALAGQWLAYGVTRSVTKR 634
Query: 790 TVMTSVYGVTFVGAREQIKRRLEEKGHITDDRQLFA----AACYAAKVTLTALGEIFEAA 845
+VMT YG G R+Q+ + + +F AA Y AK+ ++ AA
Sbjct: 635 SVMTLAYGSKEFGFRQQVLEDTIQPAIDSGKGLMFTQPNQAAGYMAKLIWESVSVTVVAA 694
Query: 846 RSIMGWLGDCAKVIASENQ------------PVRWTTPLGLPVVQPYCK------NERHL 887
M WL AK++A+E + V W TP G PV Q Y K N L
Sbjct: 695 VEAMNWLKSAAKLLAAEVKDKKTGEILRKRCAVHWVTPDGFPVWQEYKKPIQTRLNLMFL 754
Query: 888 IRTSLQVLALQREGNLVKIRKQRTAFPPNFVHSLDGSHMMMTAV 931
+ LQ + + + KQ + PNFVHS DGSH+ T V
Sbjct: 755 GQFRLQPTINTNKDSEIDAHKQESGIAPNFVHSQDGSHLRKTVV 798
>gi|385867953|gb|AFI93668.1| T7 RNA polymerase [Binary vector pVCPGUS(I)23010]
gi|385867959|gb|AFI93673.1| T7 RNA polymerase [Binary vector pVCPGUS23010]
Length = 884
Score = 237 bits (605), Expect = 2e-59, Method: Compositional matrix adjust.
Identities = 227/824 (27%), Positives = 366/824 (44%), Gaps = 129/824 (15%)
Query: 178 LRRRQVKQETEAWERMVDEYKELEAKMIEKRL--------APNLPHIKGLFLGWFGPLSE 229
L R Q+ E E++E ++ KM E++L A P I L +++
Sbjct: 33 LAREQLALEHESYEMGEARFR----KMFERQLKAGEVADNAAAKPLITTLLPKMIARIND 88
Query: 230 AIEREQKMQRTKKQKAAYAPHIELLPADKVAVIVMHKMMGLVMAGHEDRCVQVVQAAVHI 289
E E K +R K+ A ++ + + VA I + + + + ++ VQ V +A I
Sbjct: 89 WFE-EVKAKRGKRPTAF--QFLQEIKPEAVAYITIKTTLACLTSA-DNTTVQAVASA--I 142
Query: 290 GMAIEQEIRIHSFLEKTKNYKRKKIIADTEEVLSKEKELLRKRVNSLIKSK--RVMEA-- 345
G AIE E R + + +K + +E L KRV + K +V+EA
Sbjct: 143 GRAIEDEARFGRIRDLEAKHFKKNV-----------EEQLNKRVGHVYKKAFMQVVEADM 191
Query: 346 --QKLLKNEETKPWGRDTQAKLGSRLVELLIETAYVQHPVNPADYSPPDVRPAFRHRFKT 403
+ LL E W ++ +G R +E+LIE+ + R
Sbjct: 192 LSKGLLGGEAWSSWHKEDSIHVGVRCIEMLIEST--------------GMVSLHRQNAGV 237
Query: 404 ILKHPGQKTTKRYGVVECDPLVLEGLDRSAKHM--LIP-YVPMLVPPKKWKGYNKGGYLF 460
+ GQ + +E P E + A + + P + P +VPPK W G GGY
Sbjct: 238 V----GQDSE----TIELAPEYAEAIATRAGALAGISPMFQPCVVPPKPWTGITGGGYWA 289
Query: 461 ---LPSYVMRTHGSRKQQEALKSVTGNCMKKVFEALDTLGSTKWRVNKQVLSVLESI--W 515
P ++RTH + AL M +V++A++ +T W++NK+VL+V I W
Sbjct: 290 NGRRPLALVRTHSKK----ALMRYEDVYMPEVYKAINIAQNTAWKINKKVLAVANVITKW 345
Query: 516 --VSGGNIAGLVDRNDVLIPEKPLSEDMT--EVQKWKWSVRKAKKINQERHSQRCDTELK 571
+I ++R + +P KP DM + WK + + ++ R S+R E
Sbjct: 346 KHCPVEDIPA-IEREE--LPMKPEDIDMNPEALTAWKRAAAAVYRKDKARKSRRISLEFM 402
Query: 572 LSVARRMKDEEGFYYPHNLDFRGRAYPMHPHLNHLSSDVCRGVLEFAEGRPLGKSGLRWL 631
L A + + + ++P+N+D+RGR Y + N +D+ +G+L A+G+P+GK G WL
Sbjct: 403 LEQANKFANHKAIWFPYNMDWRGRVYAVS-MFNPQGNDMTKGLLTLAKGKPIGKEGYYWL 461
Query: 632 KIHLANLFSGGVEKLSHDGRLAFVENHLYEIFDSAENPINGSRWWLTAEDPFQCLAACIN 691
KIH AN GV+K+ R+ F+E + I A++P+ + WW + PF LA C
Sbjct: 462 KIHGAN--CAGVDKVPFPERIKFIEENHENIMACAKSPLENT-WWAEQDSPFCFLAFCFE 518
Query: 692 LSEALKSSSPHSVISH---LPIHQDGSCNGLQHYAALGRNTLEAAAVNLVAGEKPADVYS 748
+ H +S+ LP+ DGSC+G+QH++A+ R+ + AVNL+ E D+Y
Sbjct: 519 YA-----GVQHHGLSYNCSLPLAFDGSCSGIQHFSAMLRDEVGGRAVNLLPSETVQDIYG 573
Query: 749 EIAVRVHEIMKRDSNKDPSKH-------------------PQALLAKILIDQVDRKLVKQ 789
+A +V+EI++ D+ +AL + L V R + K+
Sbjct: 574 IVAKKVNEILQADAINGTDNEVVTVTDENTGEISEKVKLGTKALAGQWLAYGVTRSVTKR 633
Query: 790 TVMTSVYGVTFVGAREQIKRRLEEKGHITDDRQLFA----AACYAAKVTLTALGEIFEAA 845
+VMT YG G R+Q+ + + +F AA Y AK+ ++ AA
Sbjct: 634 SVMTLAYGSKEFGFRQQVLEDTIQPAIDSGKGLMFTQPNQAAGYMAKLIWESVSVTVVAA 693
Query: 846 RSIMGWLGDCAKVIASENQ------------PVRWTTPLGLPVVQPYCK------NERHL 887
M WL AK++A+E + V W TP G PV Q Y K N L
Sbjct: 694 VEAMNWLKSAAKLLAAEVKDKKTGEILRKRCAVHWVTPDGFPVWQEYKKPIQTRLNLMFL 753
Query: 888 IRTSLQVLALQREGNLVKIRKQRTAFPPNFVHSLDGSHMMMTAV 931
+ LQ + + + KQ + PNFVHS DGSH+ T V
Sbjct: 754 GQFRLQPTINTNKDSEIDAHKQESGIAPNFVHSQDGSHLRKTVV 797
>gi|315518929|dbj|BAJ51806.1| RNA polymerase-like protein [Ralstonia phage RSB2]
Length = 863
Score = 237 bits (605), Expect = 2e-59, Method: Compositional matrix adjust.
Identities = 206/755 (27%), Positives = 345/755 (45%), Gaps = 94/755 (12%)
Query: 246 AYAPHIELLPADKVAVIVMHKMMGLVMAGHEDRCVQVVQAAVHIGMAIEQEIRIHSFLEK 305
A A + + ++ A I + ++ + V + + MAI ++ + +
Sbjct: 85 AAAKFLSQVSVERAAFITLRCILNAMTQTSGGSGSSKVPTVISVTMAIGHDMEDEARFGR 144
Query: 306 TKNYKRKKIIADTEEVLSKEKELLRKRVNSLIKSKRVMEAQKLLKNEETKPWGRDTQAKL 365
++ +K A +++ KR + + +A +L +E W +A +
Sbjct: 145 MRDENQKHFDARIAPAIAQRSGDHFKRAYARAVEVAMQDAGEL---DEWDGWSNQERAAV 201
Query: 366 GSRLVELLIETAYV-----QHPVNPADYSPPDVRPAFRHRFKTILKHPGQKTTKRYGVVE 420
G +LVE++I++ + +H +P RHR VVE
Sbjct: 202 GLKLVEIVIQSTGLIELKQEHKGDPK-----------RHRV----------------VVE 234
Query: 421 CDPLVLEGLDR---SAKHMLIPYVPMLVPPKKWKGYNKGGYLF--LPSYVMRTHGSRKQQ 475
E L + + M Y P +VPPK W + GGY F + +M GS K+
Sbjct: 235 ITDQYAEWLAKRTHTLADMTPAYAPCVVPPKPWINHRAGGYWFNEDKAPLMLVRGSPKRN 294
Query: 476 EALKSVTGNCMKKVFEALDTLGSTKWRVNKQVLSVLESI--WVSGGNIAGLVDRNDVLIP 533
+ V + KV +L+ + +T W +NK+VL V E + W + + + P
Sbjct: 295 RRYRDVD---LTKVLASLNAIQNTPWTINKRVLEVAEQVAQW-ENPPVKKMPSHVTLEKP 350
Query: 534 EK--PLSEDMTEVQKWKWSVRKAKKINQERHSQRCDTELKLSVARRMKDEEGFYYPHNLD 591
E+ + ED +++WK A + + R S+R E L AR+ E ++P++LD
Sbjct: 351 ERLDEMDEDEAVLKQWKKQAALAYRKEKARRSRRYQLETSLFQARKYAGFERLWFPYSLD 410
Query: 592 FRGRAYPMHPHLNHLSSDVCRGVLEFAEGRPLGKSGLRWLKIHLANLFSGGVEKLSHDGR 651
FRGR Y + D+ + +L FA+ +G G WL++HLAN +GG++K + + R
Sbjct: 411 FRGRIYAA-TKFSPQGQDLDKALLLFADAPEIGVGGEFWLRMHLAN--TGGMDKATMEER 467
Query: 652 LAFVENHLYEIFDSAENPINGSRWWLT-AEDPFQCLAACINLSEALKSSSPHSVISHLPI 710
+ + +++ I A NP++ WW T A+ PF LAA + K+ P S L I
Sbjct: 468 IQWTKDNEEMILAVAANPLD-CLWWATDADSPFCFLAAAFEYAN-WKAIGP-SYRCGLAI 524
Query: 711 HQDGSCNGLQHYAALGRNTLEAAAVNLVAGEKPADVYSEIAVRVHEIMKRDSNKDPSKHP 770
DGSC+G+QH++A+ R+ + AVNL+ EKP+D+Y ++ +V++++ +D + +
Sbjct: 525 AFDGSCSGIQHFSAMLRDEIGGKAVNLIPSEKPSDIYRIVSDKVNKVLLKDLADGTADYT 584
Query: 771 QAL------------------LAKILID-QVDRKLVKQTVMTSVYGVTFVGAREQIKRRL 811
+ LA+ +D +V R + K++VMT YG G +Q+ +
Sbjct: 585 DTITDKETGEITERPRRGTKTLARHWMDYKVTRSVTKRSVMTLPYGSKKYGFTDQLFEDI 644
Query: 812 EEKGHITDDR-QLFAA---AC-YAAKVTLTALGEIFEAARSIMGWLGDCAKVIASENQPV 866
+ + D+R F A AC Y A + ALG AA M WL A ++ E P
Sbjct: 645 VQPAN--DERPDTFPAPSEACSYMAGLIWDALGTTVVAAVEAMAWLQKVAVILVGEGMPC 702
Query: 867 RWTTPLGLPVVQPYCKNERHL--------IRTSLQVLALQREGNLVKI--RKQRTAFPPN 916
W TP G PV Q Y K + H IR ++ V + +G + KQ+ PN
Sbjct: 703 HWVTPAGFPVWQEYRKTDAHRIDTVICGNIRITMTVNKSESQGGQKPLDRHKQQNGISPN 762
Query: 917 FVHSLDGSHMMMTAVACRDAGL-HFAGL--SFQSA 948
FVHS+D SHMM+T +A G+ HFA + SF +A
Sbjct: 763 FVHSMDASHMMLTCLAASQNGVQHFATIHDSFGTA 797
>gi|150261381|pdb|2PI4|A Chain A, T7rnap Complexed With A Phi10 Protein And Initiating Gtps.
gi|150261384|pdb|2PI5|A Chain A, T7 Rna Polymerase Complexed With A Phi10 Promoter
Length = 878
Score = 237 bits (605), Expect = 2e-59, Method: Compositional matrix adjust.
Identities = 227/824 (27%), Positives = 366/824 (44%), Gaps = 129/824 (15%)
Query: 178 LRRRQVKQETEAWERMVDEYKELEAKMIEKRL--------APNLPHIKGLFLGWFGPLSE 229
L R Q+ E E++E ++ KM E++L A P I L +++
Sbjct: 27 LAREQLALEHESYEMGEARFR----KMFERQLKAGEVADNAAAKPLITTLLPKMIARIND 82
Query: 230 AIEREQKMQRTKKQKAAYAPHIELLPADKVAVIVMHKMMGLVMAGHEDRCVQVVQAAVHI 289
E E K +R K+ A ++ + + VA I + + + + ++ VQ V +A I
Sbjct: 83 WFE-EVKAKRGKRPTAF--QFLQEIKPEAVAYITIKTTLACLTSA-DNTTVQAVASA--I 136
Query: 290 GMAIEQEIRIHSFLEKTKNYKRKKIIADTEEVLSKEKELLRKRVNSLIKSK--RVMEA-- 345
G AIE E R + + +K + +E L KRV + K +V+EA
Sbjct: 137 GRAIEDEARFGRIRDLEAKHFKKNV-----------EEQLNKRVGHVYKKAFMQVVEADM 185
Query: 346 --QKLLKNEETKPWGRDTQAKLGSRLVELLIETAYVQHPVNPADYSPPDVRPAFRHRFKT 403
+ LL E W ++ +G R +E+LIE+ + HR
Sbjct: 186 LSKGLLGGEAWSSWHKEDSIHVGVRCIEMLIESTGM----------------VSLHRQNA 229
Query: 404 ILKHPGQKTTKRYGVVECDPLVLEGLDRSAKHM--LIP-YVPMLVPPKKWKGYNKGGYLF 460
+ +T +E P E + A + + P + P +VPPK W G GGY
Sbjct: 230 GVVGQDSET------IELAPEYAEAIATRAGALAGISPMFQPCVVPPKPWTGITGGGYWA 283
Query: 461 ---LPSYVMRTHGSRKQQEALKSVTGNCMKKVFEALDTLGSTKWRVNKQVLSVLESI--W 515
P ++RTH + AL M +V++A++ +T W++NK+VL+V I W
Sbjct: 284 NGRRPLALVRTHSKK----ALMRYEDVYMPEVYKAINIAQNTAWKINKKVLAVANVITKW 339
Query: 516 --VSGGNIAGLVDRNDVLIPEKPLSEDMT--EVQKWKWSVRKAKKINQERHSQRCDTELK 571
+I ++R + +P KP DM + WK + + ++ R S+R E
Sbjct: 340 KHCPVEDIPA-IEREE--LPMKPEDIDMNPEALTAWKRAAAAVYRKDKARKSRRISLEFM 396
Query: 572 LSVARRMKDEEGFYYPHNLDFRGRAYPMHPHLNHLSSDVCRGVLEFAEGRPLGKSGLRWL 631
L A + + + ++P+N+D+RGR Y + N +D+ +G+L A+G+P+GK G WL
Sbjct: 397 LEQANKFANHKAIWFPYNMDWRGRVYAVS-MFNPQGNDMTKGLLTLAKGKPIGKEGYYWL 455
Query: 632 KIHLANLFSGGVEKLSHDGRLAFVENHLYEIFDSAENPINGSRWWLTAEDPFQCLAACIN 691
KIH AN GV+K+ R+ F+E + I A++P+ + WW + PF LA C
Sbjct: 456 KIHGAN--CAGVDKVPFPERIKFIEENHENIMACAKSPLENT-WWAEQDSPFCFLAFCFE 512
Query: 692 LSEALKSSSPHSVISH---LPIHQDGSCNGLQHYAALGRNTLEAAAVNLVAGEKPADVYS 748
+ H +S+ LP+ DGSC+G+QH++A+ R+ + AVNL+ E D+Y
Sbjct: 513 YA-----GVQHHGLSYNCSLPLAFDGSCSGIQHFSAMLRDEVGGRAVNLLPSETVQDIYG 567
Query: 749 EIAVRVHEIMKRDSNKDPSKH-------------------PQALLAKILIDQVDRKLVKQ 789
+A +V+EI++ D+ +AL + L V R + K+
Sbjct: 568 IVAKKVNEILQADAINGTDNEVVTVTDENTGEISEKVKLGTKALAGQWLAYGVTRSVTKR 627
Query: 790 TVMTSVYGVTFVGAREQIKRRLEEKGHITDDRQLFA----AACYAAKVTLTALGEIFEAA 845
+VMT YG G R+Q+ + + +F AA Y AK+ ++ AA
Sbjct: 628 SVMTLAYGSKEFGFRQQVLEDTIQPAIDSGKGLMFTQPNQAAGYMAKLIWESVSVTVVAA 687
Query: 846 RSIMGWLGDCAKVIASENQ------------PVRWTTPLGLPVVQPYCK------NERHL 887
M WL AK++A+E + V W TP G PV Q Y K N L
Sbjct: 688 VEAMNWLKSAAKLLAAEVKDKKTGEILRKRCAVHWVTPDGFPVWQEYKKPIQTRLNLMFL 747
Query: 888 IRTSLQVLALQREGNLVKIRKQRTAFPPNFVHSLDGSHMMMTAV 931
+ LQ + + + KQ + PNFVHS DGSH+ T V
Sbjct: 748 GQFRLQPTINTNKDSEIDAHKQESGIAPNFVHSQDGSHLRKTVV 791
>gi|326536115|ref|YP_004300538.1| gp1 [Enterobacteria phage 285P]
gi|256861504|gb|ACV32460.1| gp1 [Enterobacteria phage 285P]
Length = 883
Score = 236 bits (603), Expect = 3e-59, Method: Compositional matrix adjust.
Identities = 207/705 (29%), Positives = 331/705 (46%), Gaps = 106/705 (15%)
Query: 286 AVHIGMAIEQEIRIHSFL-EKTKNYKRKKIIADTEEVLSKEKELLRKRVNSLIKSKRVME 344
A IG +IE E+R E+ K++K +E L+K ++ K+ ++++
Sbjct: 139 ATKIGRSIEDELRFGRIRDEEAKHFKNH-----VQEALNKRVGIVYKKAFMQAVEGKMLD 193
Query: 345 AQKLLKNEETKPWGRDTQAKLGSRLVELLI-ETAYVQHPVNPADYSPPDVRPAFRHRFKT 403
A +L T W + +G R++ELLI T V+
Sbjct: 194 AGQLQTKWTT--WTPEESIHVGVRMLELLIGSTGLVE----------------------- 228
Query: 404 ILKHPGQKTTKRYG-VVECDPLVLEGLDRSAKHM--LIP-YVPMLVPPKKWKGYNKGGYL 459
L P ++ G ++ ++ L + A + + P Y P +VPPK W GGY
Sbjct: 229 -LHRPFAGNVEKDGEYIQLTEQYVDLLSKRAGALAAIAPMYQPCVVPPKPWTSPVGGGYW 287
Query: 460 FL---PSYVMRTHGSRKQQEALKSVTGNCMKKVFEALDTLGSTKWRVNKQVLSVLESI-- 514
P ++RT GS+K E V M +V++A++ +T W++NK+VL+V+ I
Sbjct: 288 AAGRKPLSLVRT-GSKKGLERYNDV---YMPEVYKAVNIAQNTPWKINKKVLAVVNEIVN 343
Query: 515 W--VSGGNIAGLVDRNDVLIPEKPLSEDMTE--VQKWKWSVRKAKKINQERHSQRCDTEL 570
W ++ L +R + +P KP D E ++ WK + + + R S+R E
Sbjct: 344 WKHCPVEDVPAL-ERGE--LPVKPEDIDTNEASLKAWKKAASAIYRKEKARVSRRMSMEF 400
Query: 571 KLSVARRMKDEEGFYYPHNLDFRGRAYPMHPHLNHLSSDVCRGVLEFAEGRPLGKSGLRW 630
L A + + ++P N+D+RGR Y + P N +D+ +G+L A+G+P+G G W
Sbjct: 401 MLGQANKFAQFKAIWFPMNMDWRGRVYAV-PMFNPQGNDMTKGLLTLAKGKPIGVDGYYW 459
Query: 631 LKIHLANLFSGGVEKLSHDGRLAFVENHLYEIFDSAENPINGSRWWLTAEDPFQCLAACI 690
LKIH AN + GV+K+ R+ F++++ I A +PI + WW + PF LA C
Sbjct: 460 LKIHGAN--TAGVDKVDFAERIKFIDDNHENIMSVAADPI-ANTWWAEQDSPFCFLAFCF 516
Query: 691 NLSEALKSSSPHSVISHLPIHQDGSCNGLQHYAALGRNTLEAAAVNLVAGEKPADVYSEI 750
+ ++ LP+ DGSC+G+QH++A+ R+ + AVNL+ ++ D+Y +
Sbjct: 517 EYAGVQHHGMNYNC--SLPLAFDGSCSGIQHFSAMLRDEIGGRAVNLLPSKEVQDIYRIV 574
Query: 751 AVRVHEIMKRD------------SNKDPSK-------HPQALLAKILIDQVDRKLVKQTV 791
A RV+EI+ +D +NKD + + L + L V RK+ K++V
Sbjct: 575 AERVNEILNQDVINGTDNEVETVTNKDTGEITEKLKLGTKELAGQWLAYGVTRKVTKRSV 634
Query: 792 MTSVYGVTFVGAREQIKRRLEE--KGHITDDRQLF-----AAACYAAKVTLTALGEIFEA 844
MT YG G R+Q+ LE+ + I D + L AA Y AK+ A+ A
Sbjct: 635 MTLAYGSKEYGFRDQV---LEDTIQPAIDDGKGLMFTQPNQAAGYMAKLIWNAVTVTVVA 691
Query: 845 ARSIMGWLGDCAKVIASENQ------------PVRWTTPLGLPVVQPYCK------NERH 886
A M WL AK++A+E + V W TP G PV Q Y K N
Sbjct: 692 AVEAMNWLKSAAKLLAAEVKDKKTKEVLRKRCAVHWVTPDGFPVWQEYKKPVQTRLNLMF 751
Query: 887 LIRTSLQVLALQREGNLVKIRKQRTAFPPNFVHSLDGSHMMMTAV 931
L + LQ + + + RKQ + PNFVHS+DGSH+ MT V
Sbjct: 752 LGQIRLQPTVNTNKDSGIDARKQESGIAPNFVHSMDGSHLRMTVV 796
>gi|224116192|ref|XP_002331984.1| predicted protein [Populus trichocarpa]
gi|222832108|gb|EEE70585.1| predicted protein [Populus trichocarpa]
Length = 293
Score = 236 bits (601), Expect = 6e-59, Method: Compositional matrix adjust.
Identities = 122/257 (47%), Positives = 171/257 (66%), Gaps = 28/257 (10%)
Query: 196 EYKELEAKMIEKRLAPNLPHIKGLFLGWFGPLSEAIEREQKMQRTKKQKAAYAPHIELLP 255
EYKEL M E +LAPNLP+ K LFLGWF P ++AI +EQ++ R K + YAP+ +LLP
Sbjct: 5 EYKELLKDMCEHKLAPNLPYTKSLFLGWFEPFTDAIAKEQELIRMGKSRKGYAPYFDLLP 64
Query: 256 ADKVAVIVMHKMMGLVMAGHEDRCVQVVQAAVHIGMAIEQEIRIHSFLEKTKNYKRKKII 315
ADK++VI MH++ +VM G E C +VV AA IG AIEQEIRIH+ LEKT+ K+K+
Sbjct: 65 ADKMSVIAMHQLGAMVMTGGEHGCARVVTAACMIGDAIEQEIRIHNILEKTR--KKKEKA 122
Query: 316 ADTEEVLSKEKELLRKRVNSLIKSKRVMEAQKLLKNEETKPWGRDTQAKLGSRLVELLIE 375
D++ + E S VM+ Q+ L+ K+GSRL+ELL++
Sbjct: 123 NDSKNGVEGE-------------SPAVMKEQENLRK------------KVGSRLIELLLQ 157
Query: 376 TAYVQHPVNPADYSPPDVRPAFRHRFKTILKHPGQKTTKRYGVVECDPLVLEGLDRSAKH 435
TAY+Q P + SP + RPAF H F+T+ + +K K+YGV++CDPLVL+GL+++A+H
Sbjct: 158 TAYIQPPSDQLADSPSEPRPAFVHTFRTV-SYENKKGAKKYGVIQCDPLVLKGLEKTARH 216
Query: 436 MLIPYVPMLVPPKKWKG 452
M+IPY+PMLVPP +W+G
Sbjct: 217 MVIPYMPMLVPPLRWRG 233
>gi|225626353|ref|YP_002727849.1| putative phage-specific RNA polymerase [Pseudomonas phage phikF77]
gi|225594862|emb|CAX63147.1| putative phage-specific RNA polymerase [Pseudomonas phage phikF77]
Length = 816
Score = 234 bits (597), Expect = 2e-58, Method: Compositional matrix adjust.
Identities = 164/522 (31%), Positives = 253/522 (48%), Gaps = 33/522 (6%)
Query: 443 MLVPPKKWKGYNKGGYLFLPS-----YVMRT--HGSRKQQEALKSVTGNCMKKVFEALDT 495
ML PP+ W+ + GGY + V RT R +Q L+ + + M +V+EA++
Sbjct: 233 MLAPPRPWQDWCDGGYYSAKAQKHHVLVRRTKHQTKRARQMQLRHLGRDKMPRVYEAVNV 292
Query: 496 LGSTKWRVNKQVLSVLESIWVSGGNIAGLVDRNDVLIPEKPLSED----------MTEVQ 545
L S + +N V ++E ++ SGG + G+ R PE PL ++ +
Sbjct: 293 LQSVAYEINHDVYEIIERVFTSGGGVLGIPQRTYPDKPEFPLGDEWAKENASEQELEAFN 352
Query: 546 KWKWSVRKAKKINQERHSQRCDTELKLSVARRMKDEEGFYYPHNLDFRGRAYPMHPHLNH 605
+WK SV + +E H+ + L R + Y+P ++D RGR Y N
Sbjct: 353 RWKRSVHRWYTGERE-HTAKLREFAALYRVVREHHGKAVYFPMHVDSRGRMYYWGTP-NP 410
Query: 606 LSSDVCRGVLEFAEGRPLGKSGLRWLKIHLANLFSGGVEKLSHDGRLAFVENHLYEIFDS 665
SD+ + L F E R LGK GL WLK+H+AN S G +K+ D R A+V+ ++ F
Sbjct: 411 QGSDIAKACLRFHEKRVLGKRGLYWLKVHVAN--SLGCDKVYFDDRAAWVDER-WDDFQR 467
Query: 666 A--ENPINGSRWWLTAEDPFQCLAACINLSEALKSSSPHSVISHLPIHQDGSCNGLQHYA 723
A E P N + AE P +A + L A S +P S +H D +C+GLQHY+
Sbjct: 468 ALDEGPENYPSLFPEAESPLCAIAGLLELRAAYASGNPEGYASGFIVHMDATCSGLQHYS 527
Query: 724 ALGRNTLEAAAVNLV-AGEKPADVYSEIAVRVHEIMKRDSNKDPSKHPQALLAKILIDQ- 781
A+ R+ + A VNL+ G AD+YS + V+E ++RD + + +L D+
Sbjct: 528 AILRDEIGGAYVNLLPPGLAKADIYSRVLGLVNEALERDRAEGADGEARGY--ALLWDKA 585
Query: 782 -VDRKLVKQTVMTSVYGVTFVGAREQIKRRLEEKG-HITDDRQLFAAACYAAKVTLTALG 839
+ R L K+ MT VYG TF G + L+E G I + + Y A + L A+
Sbjct: 586 GLTRNLTKKPCMTLVYGTTFKGVVDHCLDYLDESGVEIPEGVPSYRLGSYMATLILDAIR 645
Query: 840 EIFEAARSIMGWLGDCAKVIASENQPVRWTTPLGLPVVQPYCKNERHLIRT---SLQVLA 896
E +A M WL AK + ++ + WTTPLG+ V Q Y K E +R +++ +
Sbjct: 646 ETVPSAVFAMEWLQRLAKALPDASKDLHWTTPLGMQVFQSYPKTEEVRVRLRAEAVEYVT 705
Query: 897 LQREGNLVKIRKQRTAFPPNFVHSLDGSHMMMTAVACRDAGL 938
L + + + PNFVH LD SH+ +TA+AC G+
Sbjct: 706 LYEAKDELDPLRNANGIAPNFVHGLDSSHLGLTALACAAEGI 747
>gi|37956700|gb|AAP33969.1| gene 1 [Enterobacteria phage T7]
Length = 883
Score = 233 bits (595), Expect = 3e-58, Method: Compositional matrix adjust.
Identities = 225/824 (27%), Positives = 365/824 (44%), Gaps = 129/824 (15%)
Query: 178 LRRRQVKQETEAWERMVDEYKELEAKMIEKRL--------APNLPHIKGLFLGWFGPLSE 229
L R Q+ E E++E ++ KM E++L A P I L +++
Sbjct: 32 LAREQLALEHESYEMGEARFR----KMFERQLKAGEVADNAAAKPLITTLLPKMIARIND 87
Query: 230 AIEREQKMQRTKKQKAAYAPHIELLPADKVAVIVMHKMMGLVMAGHEDRCVQVVQAAVHI 289
E E K +R K+ A ++ + + VA I + + + + ++ VQ V +A I
Sbjct: 88 WFE-EVKAKRGKRPTAF--QFLQEIKPEAVAYITIKTTLACLTSA-DNITVQAVASA--I 141
Query: 290 GMAIEQEIRIHSFLEKTKNYKRKKIIADTEEVLSKEKELLRKRVNSLIKSK--RVMEA-- 345
G AIE E R + + +K + +E L KRV + K +V+EA
Sbjct: 142 GRAIEDEARFGRIRDLEAKHFKKNV-----------EEQLNKRVGHVYKKAFMQVVEADM 190
Query: 346 --QKLLKNEETKPWGRDTQAKLGSRLVELLIETAYVQHPVNPADYSPPDVRPAFRHRFKT 403
+ LL E W ++ +G R +E+LIE+ + HR
Sbjct: 191 LSKGLLGGEAWSSWHKEDSIHVGVRCIEMLIESTGM----------------VSLHRQNA 234
Query: 404 ILKHPGQKTTKRYGVVECDPLVLEGLDRSAKHM--LIP-YVPMLVPPKKWKGYNKGGYLF 460
+ +T +E P E + A + + P + P ++P K W G GGY
Sbjct: 235 GVVGQDSET------IELAPEYAEAIATRAGALAGISPMFQPCVIPSKPWTGITGGGYWA 288
Query: 461 ---LPSYVMRTHGSRKQQEALKSVTGNCMKKVFEALDTLGSTKWRVNKQVLSVLESI--W 515
P ++RTH + AL M +V++A++ +T W++NK+VL+V I W
Sbjct: 289 NGRRPLALVRTHSKK----ALMRYENVYMPEVYKAINIAQNTAWKINKKVLAVANVITKW 344
Query: 516 --VSGGNIAGLVDRNDVLIPEKPLSEDMT--EVQKWKWSVRKAKKINQERHSQRCDTELK 571
+I ++R + +P KP DM + WK + + ++ R S+R + E
Sbjct: 345 KHCPVEDIPA-IEREE--LPMKPKDIDMNPEALTAWKRAAAAVYRKDKARKSRRINLEFM 401
Query: 572 LSVARRMKDEEGFYYPHNLDFRGRAYPMHPHLNHLSSDVCRGVLEFAEGRPLGKSGLRWL 631
L A + + + ++P+N+D+RGR Y + N +D+ +G+L A+G+P+GK G WL
Sbjct: 402 LEQANKFANHKAIWFPYNMDWRGRVYAV-SMFNPQGNDMTKGLLTLAKGKPIGKEGYYWL 460
Query: 632 KIHLANLFSGGVEKLSHDGRLAFVENHLYEIFDSAENPINGSRWWLTAEDPFQCLAACIN 691
KIH AN GV+K+ R+ F+E + I A++P+ + WW PF LA C
Sbjct: 461 KIHGAN--CAGVDKVPFPERIKFIEENHENIMACAKSPLENT-WWAEQNSPFCFLAFCFE 517
Query: 692 LSEALKSSSPHSVISH---LPIHQDGSCNGLQHYAALGRNTLEAAAVNLVAGEKPADVYS 748
+ H +S+ LP+ DGSC+G+QH++A+ R+ + AVNL+ E D+Y
Sbjct: 518 YA-----GVQHHGLSYNCSLPLAFDGSCSGIQHFSAMLRDEVGGRAVNLLPSETVQDIYG 572
Query: 749 EIAVRVHEIMKRDSNKDPSKH-------------------PQALLAKILIDQVDRKLVKQ 789
+A +V+EI++ D+ +AL + L V R + K+
Sbjct: 573 IVAKKVNEILQADAINGTDNEVVTVTDENTGEISEKIKLGTKALAGQWLAYGVTRSVTKR 632
Query: 790 TVMTSVYGVTFVGAREQIKRRLEEKGHITDDRQLFA----AACYAAKVTLTALGEIFEAA 845
+VMT YG G R+Q+ + + +F AA Y AK+ ++ AA
Sbjct: 633 SVMTLAYGSKEFGFRQQVLEDTIQPAIDSGKGLMFTQPNQAAGYMAKLIWESVSVTVVAA 692
Query: 846 RSIMGWLGDCAKVIASENQ------------PVRWTTPLGLPVVQPYCK------NERHL 887
M WL AK++A+E + V W TP G PV Q Y K N L
Sbjct: 693 VEAMNWLKSAAKLLAAEVKDKKTGEILRKRCAVHWVTPDGFPVWQEYKKPIQTRLNLMFL 752
Query: 888 IRTSLQVLALQREGNLVKIRKQRTAFPPNFVHSLDGSHMMMTAV 931
+ LQ + + + KQ + PNFVHS DGSH+ T V
Sbjct: 753 GQFRLQPTINTNKDSEIDAHKQESGIAPNFVHSQDGSHLRKTVV 796
>gi|37956752|gb|AAP34020.1| gene 1 [Enterobacteria phage T7]
Length = 883
Score = 233 bits (594), Expect = 3e-58, Method: Compositional matrix adjust.
Identities = 225/824 (27%), Positives = 365/824 (44%), Gaps = 129/824 (15%)
Query: 178 LRRRQVKQETEAWERMVDEYKELEAKMIEKRL--------APNLPHIKGLFLGWFGPLSE 229
L R Q+ E E++E ++ KM E++L A P I L +++
Sbjct: 32 LAREQLALEHESYEMGEARFR----KMFERQLKAGEVADNAAAKPLITTLLPKMIARIND 87
Query: 230 AIEREQKMQRTKKQKAAYAPHIELLPADKVAVIVMHKMMGLVMAGHEDRCVQVVQAAVHI 289
E E K +R K+ A ++ + + VA I + + + + ++ VQ V +A I
Sbjct: 88 WFE-EVKAKRGKRPTAF--QFLQEIKPEAVAYITIKTTLACLTSA-DNITVQAVASA--I 141
Query: 290 GMAIEQEIRIHSFLEKTKNYKRKKIIADTEEVLSKEKELLRKRVNSLIKSK--RVMEA-- 345
G AIE E R + + +K + +E L KRV + K +V+EA
Sbjct: 142 GRAIEDEARFGRIRDLEAKHFKKNV-----------EEQLNKRVGHVYKKAFMQVVEADM 190
Query: 346 --QKLLKNEETKPWGRDTQAKLGSRLVELLIETAYVQHPVNPADYSPPDVRPAFRHRFKT 403
+ LL E W ++ +G R +E+LIE+ + R
Sbjct: 191 LSKGLLGGEAWSSWHKEDSIHVGVRCIEMLIEST--------------GMVSLHRQNAGV 236
Query: 404 ILKHPGQKTTKRYGVVECDPLVLEGLDRSAKHM--LIP-YVPMLVPPKKWKGYNKGGYLF 460
+ GQ + +E P E + A + + P + P ++P K W G GGY
Sbjct: 237 V----GQDSE----TIELAPEYAEAIATRAGALAGISPMFQPCVIPSKPWTGITGGGYWA 288
Query: 461 ---LPSYVMRTHGSRKQQEALKSVTGNCMKKVFEALDTLGSTKWRVNKQVLSVLESI--W 515
P ++RTH + AL M +V++A++ +T W++NK+VL+V I W
Sbjct: 289 NGRRPLALVRTHSKK----ALMRYENVYMPEVYKAINIAQNTAWKINKKVLAVANVITKW 344
Query: 516 --VSGGNIAGLVDRNDVLIPEKPLSEDMT--EVQKWKWSVRKAKKINQERHSQRCDTELK 571
+I ++R + +P KP DM + WK + + ++ R S+R + E
Sbjct: 345 KHCPVEDIPA-IEREE--LPMKPKDIDMNPEALTAWKRAAAAVYRKDKARKSRRINLEFM 401
Query: 572 LSVARRMKDEEGFYYPHNLDFRGRAYPMHPHLNHLSSDVCRGVLEFAEGRPLGKSGLRWL 631
L A + + + ++P+N+D+RGR Y + N +D+ +G+L A+G+P+GK G WL
Sbjct: 402 LEQANKFANHKAIWFPYNMDWRGRVYAV-SMFNPQGNDMTKGLLTLAKGKPIGKEGYYWL 460
Query: 632 KIHLANLFSGGVEKLSHDGRLAFVENHLYEIFDSAENPINGSRWWLTAEDPFQCLAACIN 691
KIH AN GV+K+ R+ F+E + I A++P+ + WW PF LA C
Sbjct: 461 KIHGAN--CAGVDKVPFPERIKFIEENHENIMACAKSPLENT-WWAEQNSPFCFLAFCFE 517
Query: 692 LSEALKSSSPHSVISH---LPIHQDGSCNGLQHYAALGRNTLEAAAVNLVAGEKPADVYS 748
+ H +S+ LP+ DGSC+G+QH++A+ R+ + AVNL+ E D+Y
Sbjct: 518 YA-----GVQHHGLSYNCSLPLAFDGSCSGIQHFSAMLRDEVGGRAVNLLPSETVQDIYG 572
Query: 749 EIAVRVHEIMKRDSNKDPSKH-------------------PQALLAKILIDQVDRKLVKQ 789
+A +V+EI++ D+ +AL + L V R + K+
Sbjct: 573 IVAKKVNEILQADAINGTDNEVVTVTDENTGEISEKIKLGTKALAGQWLAYGVTRSVTKR 632
Query: 790 TVMTSVYGVTFVGAREQIKRRLEEKGHITDDRQLFA----AACYAAKVTLTALGEIFEAA 845
+VMT YG G R+Q+ + + +F AA Y AK+ ++ AA
Sbjct: 633 SVMTLAYGSKEFGFRQQVLEDTIQPAIDSGKGLMFTQPNQAAGYMAKLIWESVSVTVVAA 692
Query: 846 RSIMGWLGDCAKVIASENQ------------PVRWTTPLGLPVVQPYCK------NERHL 887
M WL AK++A+E + V W TP G PV Q Y K N L
Sbjct: 693 VEAMNWLKSAAKLLAAEVKDKKTGEILRKRCAVHWVTPDGFPVWQEYKKPIQTRLNLMFL 752
Query: 888 IRTSLQVLALQREGNLVKIRKQRTAFPPNFVHSLDGSHMMMTAV 931
+ LQ + + + KQ + PNFVHS DGSH+ T V
Sbjct: 753 GQFRLQPTINTNKDSEIDAHKQESGIAPNFVHSQDGSHLRKTVV 796
>gi|33300837|ref|NP_877465.1| putative DNA-dependent RNA polymerase [Pseudomonas phage phiKMV]
gi|195546670|ref|YP_002117751.1| DNA-dependent RNA polymerase [Pseudomonas phage PT5]
gi|387935474|ref|YP_006299950.1| RNA polymerase [Pseudomonas phage vB_Pae-TbilisiM32]
gi|33284808|emb|CAD44217.1| putative DNA-dependent RNA polymerase [Enterobacteria phage phiKMV]
gi|158187631|gb|ABW23108.1| DNA-dependent RNA polymerase [Pseudomonas phage PT5]
gi|378407720|gb|AFB83282.1| RNA polymerase [Pseudomonas phage vB_Pae-TbilisiM32]
Length = 816
Score = 233 bits (594), Expect = 4e-58, Method: Compositional matrix adjust.
Identities = 164/517 (31%), Positives = 252/517 (48%), Gaps = 33/517 (6%)
Query: 443 MLVPPKKWKGYNKGGYLFLPS-----YVMRT--HGSRKQQEALKSVTGNCMKKVFEALDT 495
ML PP+ W + GGY + V RT R +Q L+ + + M KV+EA++
Sbjct: 233 MLAPPRPWNDWCDGGYYSAKAQKHHVLVRRTKHQTKRARQAQLRHLGQDKMPKVYEAVNV 292
Query: 496 LGSTKWRVNKQVLSVLESIWVSGGNIAGLVDRNDVLIPEKPLSED----------MTEVQ 545
L S + +N+ V ++E ++ SGG + G+ R PE PL ++ +
Sbjct: 293 LQSVAYEINRDVYEIIERVFNSGGGVLGIPQRTYPDKPEFPLGDEWAKENASEQELEAFN 352
Query: 546 KWKWSVRKAKKINQERHSQRCDTELKLSVARRMKDEEGFYYPHNLDFRGRAYPMHPHLNH 605
+WK SV + +E H+ + L R + Y+P ++D RGR Y N
Sbjct: 353 RWKRSVHRWYTGERE-HTAKLREFAALYRVVREHHGKAVYFPMHVDSRGRMY-YWGTPNP 410
Query: 606 LSSDVCRGVLEFAEGRPLGKSGLRWLKIHLANLFSGGVEKLSHDGRLAFVENHLYEIFDS 665
SD+ + L F + R LGK GL WLK+H+AN S G +K+ D R A+V+ ++ F
Sbjct: 411 QGSDIAKACLRFHDKRVLGKRGLYWLKVHVAN--SLGCDKVYFDDRAAWVDER-WDDFQR 467
Query: 666 A--ENPINGSRWWLTAEDPFQCLAACINLSEALKSSSPHSVISHLPIHQDGSCNGLQHYA 723
A E P N + AE P +A + L A S +P S +H D +C+GLQHY+
Sbjct: 468 ALAEGPENYPGLFPEAESPLCAIAGLLELRAAYASGNPEGYRSGFIVHMDATCSGLQHYS 527
Query: 724 ALGRNTLEAAAVNLV-AGEKPADVYSEIAVRVHEIMKRDSNKDPSKHPQALLAKILIDQ- 781
A+ R+ + A VNL+ G AD+YS + V+E ++RD + P +A +L D+
Sbjct: 528 AILRDEIGGAYVNLLPPGLAKADIYSRVLGLVNESLERD--RAPGAEGEARGYALLWDKA 585
Query: 782 -VDRKLVKQTVMTSVYGVTFVGAREQIKRRLEEKG-HITDDRQLFAAACYAAKVTLTALG 839
+ R L K+ MT VYG TF G + L+E G I + + Y A + L A+
Sbjct: 586 GLSRSLTKKPCMTLVYGTTFKGVVDHCLDYLDESGVEIPEGVPSYRLGSYMATLILDAIR 645
Query: 840 EIFEAARSIMGWLGDCAKVIASENQPVRWTTPLGLPVVQPYCKNERHLIRT---SLQVLA 896
E +A M WL AK + ++ + W TPLG+ V Q Y K E +R +++ +
Sbjct: 646 ETVPSAVFAMEWLQRLAKALPDASKDLHWITPLGMQVFQSYPKTEEVRVRLRAEAVEYVT 705
Query: 897 LQREGNLVKIRKQRTAFPPNFVHSLDGSHMMMTAVAC 933
L + + + PNFVH LD SH+ +TA+AC
Sbjct: 706 LYEAKDELDPMRNANGIAPNFVHGLDSSHLGLTALAC 742
>gi|207345728|gb|EDZ72452.1| YFL036Wp-like protein [Saccharomyces cerevisiae AWRI1631]
Length = 236
Score = 232 bits (592), Expect = 7e-58, Method: Compositional matrix adjust.
Identities = 122/246 (49%), Positives = 161/246 (65%), Gaps = 12/246 (4%)
Query: 604 NHLSSDVCRGVLEFAEGRPLGKSGLRWLKIHLANLFSGGVEKLSHDGRLAFVENHLYEIF 663
NHL +D+ RG+L F G+ LG SGL+WLKIHL+NLF G +KL R+AF E+HL +I
Sbjct: 1 NHLGNDMSRGLLIFWHGKKLGPSGLKWLKIHLSNLF--GFDKLPLKDRVAFTESHLQDIK 58
Query: 664 DSAENPINGSRWWLTAEDPFQCLAACINLSEALKSSSPHSVISHLPIHQDGSCNGLQHYA 723
DSAENP+ G RWW TA+ P+Q LA C L+E +K +P ISH P+HQDG+CNGLQHYA
Sbjct: 59 DSAENPLTGDRWWTTADKPWQALATCFELNEVMKMDNPEEFISHQPVHQDGTCNGLQHYA 118
Query: 724 ALGRNTLEAAAVNLVAGEKPADVYSEIAVRVHEIMKRDSNKDPSKHPQALLAKILIDQVD 783
ALG + A VNLV +KP DVY+ +A V + ++ + K AKIL D++
Sbjct: 119 ALGGDVEGATQVNLVPSDKPQDVYAHVARLVQKRLEIAAEKGDEN------AKILKDKIT 172
Query: 784 RKLVKQTVMTSVYGVTFVGAREQIKRRLEEKGHITDDR-QLFAAACYAAKVTLTALGEIF 842
RK+VKQTVMT+VYGVT+VGA QI ++L I DDR + + Y K +A+ E+F
Sbjct: 173 RKVVKQTVMTNVYGVTYVGATFQIAKQLSP---IFDDRKESLDFSKYLTKHVFSAIRELF 229
Query: 843 EAARSI 848
+A I
Sbjct: 230 HSAHLI 235
>gi|37956803|gb|AAP34070.1| gene 1 [Enterobacteria phage T7]
Length = 883
Score = 232 bits (592), Expect = 7e-58, Method: Compositional matrix adjust.
Identities = 227/824 (27%), Positives = 364/824 (44%), Gaps = 129/824 (15%)
Query: 178 LRRRQVKQETEAWERMVDEYKELEAKMIEKRL--------APNLPHIKGLFLGWFGPLSE 229
L R Q+ E E++E ++ KM E++L A P I L +++
Sbjct: 32 LAREQLALEHESYEMGEARFR----KMFERQLKAGEVADNAAAKPLITTLLPKMIARIND 87
Query: 230 AIEREQKMQRTKKQKAAYAPHIELLPADKVAVIVMHKMMGLVMAGHEDRCVQVVQAAVHI 289
E E K +R K+ A ++ + + VA I + + + + ++ VQ AA I
Sbjct: 88 WFE-EVKAKRGKRPTAF--QFLQEIKPEAVAYITIKTTLACLTSA-DNTTVQA--AASAI 141
Query: 290 GMAIEQEIRIHSFLEKTKNYKRKKIIADTEEVLSKEKELLRKRVNSLIKSK--RVMEA-- 345
G AIE E R + + +K + +E L KRV + K +V+EA
Sbjct: 142 GRAIEDEARFGRIRDLEAKHFKKNV-----------EEQLNKRVGHVYKKAFMQVVEADM 190
Query: 346 --QKLLKNEETKPWGRDTQAKLGSRLVELLIETAYVQHPVNPADYSPPDVRPAFRHRFKT 403
+ LL E W ++ +G R +E+LIE+ + R
Sbjct: 191 LSKGLLGGEAWSSWHKEDSIHVGVRCIEMLIEST--------------GMVSLHRQNAGV 236
Query: 404 ILKHPGQKTTKRYGVVECDPLVLEGLDRSAKHM--LIP-YVPMLVPPKKWKGYNKGGYLF 460
+ GQ + +E P E + A + + P + P +V PK W G GGY
Sbjct: 237 V----GQDSE----TIELAPEYAEAIATRAGALAGISPMFQPCVVLPKPWTGITGGGYWA 288
Query: 461 ---LPSYVMRTHGSRKQQEALKSVTGNCMKKVFEALDTLGSTKWRVNKQVLSVLESI--W 515
P ++RTH + AL M +V++A++ +T W++NK+VL+V I W
Sbjct: 289 NGRRPLALVRTHSKK----ALMRYEDVYMPEVYKAINIAQNTAWKINKKVLAVANVITKW 344
Query: 516 --VSGGNIAGLVDRNDVLIPEKPLSEDMT--EVQKWKWSVRKAKKINQERHSQRCDTELK 571
NI ++R + +P KP + DM + WK + + ++ R S+R E
Sbjct: 345 KHCPVENIPA-IEREE--LPMKPENIDMNPEALIAWKRAAAAVYRKDKARKSRRISLEFM 401
Query: 572 LSVARRMKDEEGFYYPHNLDFRGRAYPMHPHLNHLSSDVCRGVLEFAEGRPLGKSGLRWL 631
L A + + + ++P+N+D+RGR Y + N +D+ +G+L A+G+P+GK G WL
Sbjct: 402 LEQANKFANHKAIWFPYNMDWRGRVYAVS-MFNPQGNDMTKGLLTLAKGKPIGKEGYYWL 460
Query: 632 KIHLANLFSGGVEKLSHDGRLAFVENHLYEIFDSAENPINGSRWWLTAEDPFQCLAACIN 691
KIH AN GV+K+ R+ F+E + I A++P+ + WW + PF LA C
Sbjct: 461 KIHGAN--CAGVDKVPFPERIKFIEENHENIIACAKSPLENT-WWAEQDSPFCFLAFCFE 517
Query: 692 LSEALKSSSPHSVISH---LPIHQDGSCNGLQHYAALGRNTLEAAAVNLVAGEKPADVYS 748
+ H +S+ LP+ DGSC+G+QH +A+ R+ + AVNL+ E D+Y
Sbjct: 518 YA-----GVQHHGLSYNCSLPLAFDGSCSGIQHXSAMLRDEVGGRAVNLLPSETVXDIYG 572
Query: 749 EIAVRVHEIMKRDSNKDPSKH-------------------PQALLAKILIDQVDRKLVKQ 789
+A +V+EI++ D+ +AL + L V R + K+
Sbjct: 573 IVAKKVNEILQADAINGTDNEVVTVTDENTGEISEKVKLGTKALAGQWLAYSVTRSVTKR 632
Query: 790 TVMTSVYGVTFVGAREQIKRRLEEKGHITDDRQLFA----AACYAAKVTLTALGEIFEAA 845
+VMT YG G R+Q+ + + +F AA Y AK+ ++ AA
Sbjct: 633 SVMTLAYGSKEFGFRQQVLEDTIQPAIDSGKGLMFTQPNQAAGYMAKLIWESVSVTVVAA 692
Query: 846 RSIMGWLGDCAKVIASENQ------------PVRWTTPLGLPVVQPYCK------NERHL 887
M WL AK++A+E + V W TP G PV Q Y K N L
Sbjct: 693 VEAMNWLKSAAKLLAAEVKDKKTGEILRKRCAVHWVTPDGFPVWQEYKKPIQTRLNLMFL 752
Query: 888 IRTSLQVLALQREGNLVKIRKQRTAFPPNFVHSLDGSHMMMTAV 931
+ LQ + + + KQ + PNFVHS DGSH+ T V
Sbjct: 753 GQFRLQPTINTNKDSEIDAHKQESGIAPNFVHSQDGSHLRKTVV 796
>gi|158345053|ref|YP_001522818.1| putative DNA-dependent RNA polymerase [Pseudomonas phage LKD16]
gi|114796406|emb|CAK25962.1| putative DNA-dependent RNA polymerase [Pseudomonas phage LKD16]
Length = 816
Score = 232 bits (592), Expect = 7e-58, Method: Compositional matrix adjust.
Identities = 163/527 (30%), Positives = 253/527 (48%), Gaps = 33/527 (6%)
Query: 443 MLVPPKKWKGYNKGGYLFLPS-----YVMRT--HGSRKQQEALKSVTGNCMKKVFEALDT 495
ML PP+ W+ + GGY + V RT R +Q L+ + + M +V+EA++T
Sbjct: 233 MLAPPRPWQDWCDGGYYSAKAQKHHVLVRRTKHQTKRARQIQLRHLGRDKMPRVYEAVNT 292
Query: 496 LGSTKWRVNKQVLSVLESIWVSGGNIAGLVDRNDVLIPEKPLSED----------MTEVQ 545
L S + +N V +++ ++ SGG + G+ R PE PL ++ +
Sbjct: 293 LQSVAYEINHDVYEIIDRVFTSGGGVLGIPKRTYPDKPEFPLGDEWSKENASEQELESFN 352
Query: 546 KWKWSVRKAKKINQERHSQRCDTELKLSVARRMKDEEGFYYPHNLDFRGRAYPMHPHLNH 605
+WK SV + +E H+ + L R + Y+P ++D RGR Y N
Sbjct: 353 RWKRSVHRWYTGERE-HTAKLREFAALYRVVREHHGKAVYFPMHVDSRGRMYYWGTP-NP 410
Query: 606 LSSDVCRGVLEFAEGRPLGKSGLRWLKIHLANLFSGGVEKLSHDGRLAFVENHLYEIFDS 665
SD+ + L F E R LGK GL WLK+H+AN S G +K+ D R A+V+ ++ F
Sbjct: 411 QGSDIAKACLRFHEKRVLGKRGLYWLKVHVAN--SLGCDKVYFDDRAAWVDER-WDDFQR 467
Query: 666 A--ENPINGSRWWLTAEDPFQCLAACINLSEALKSSSPHSVISHLPIHQDGSCNGLQHYA 723
A E P N + E P +A + L A S +P S +H D +C+GLQHY+
Sbjct: 468 ALEEGPENYPNLFPEDESPLCAIAGLLELRAAYASGNPEGYASGFIVHMDATCSGLQHYS 527
Query: 724 ALGRNTLEAAAVNLV-AGEKPADVYSEIAVRVHEIMKRDSNKDPSKHPQALLAKILIDQ- 781
A+ R+ + A VNL+ G AD+YS + V E ++RD + + +L D+
Sbjct: 528 AILRDEIGGAYVNLLPPGLAKADIYSRVLGLVSESLERDRAEGTDGEARGY--ALLWDKA 585
Query: 782 -VDRKLVKQTVMTSVYGVTFVGAREQIKRRLEEKG-HITDDRQLFAAACYAAKVTLTALG 839
+ R L K+ MT VYG TF G + L+E G I + + Y A + L A+
Sbjct: 586 GLTRSLTKKPCMTLVYGTTFKGVVDHCLDYLDESGVEIPEGVPSYLLGSYMATLILDAIR 645
Query: 840 EIFEAARSIMGWLGDCAKVIASENQPVRWTTPLGLPVVQPYCKNERHLIRT---SLQVLA 896
E +A M WL AK + ++ + WTTPLG+ V Q Y K E +R +++ +
Sbjct: 646 ETVPSAVFAMEWLQRLAKALPDASKDLHWTTPLGMQVFQSYPKTEEVRVRLRAEAVEYVT 705
Query: 897 LQREGNLVKIRKQRTAFPPNFVHSLDGSHMMMTAVACRDAGLHFAGL 943
L + + + PNFVH LD SH+ + A+AC G+H +
Sbjct: 706 LYEAKDELDPLRNANGIAPNFVHGLDSSHLGLVALACAAEGIHIQAI 752
>gi|37956858|gb|AAP34124.1| gene 1 [Enterobacteria phage T7]
Length = 883
Score = 231 bits (590), Expect = 1e-57, Method: Compositional matrix adjust.
Identities = 225/823 (27%), Positives = 363/823 (44%), Gaps = 127/823 (15%)
Query: 178 LRRRQVKQETEAWERMVDEYKELEAKMIEKRL--------APNLPHIKGLFLGWFGPLSE 229
L R Q+ E E++E ++ KM E++L A P I L +++
Sbjct: 32 LAREQLALEHESYEMGEARFR----KMFERQLKAGEVADNAAAKPLITTLLPKMIARIND 87
Query: 230 AIEREQKMQRTKKQKAAYAPHIELLPADKVAVIVMHKMMGLVMAGHEDRCVQVVQAAVHI 289
E E K +R K+ A ++ + + VA I + + + + ++ VQ AA I
Sbjct: 88 WFE-EVKAKRGKRPTAF--QFLQEIKPEAVAYITIKTTLACLTSA-DNTTVQA--AASAI 141
Query: 290 GMAIEQEIRIHSFLEKTKNYKRKKIIADTEEVLSKEKELLRKRVNSLIKSK--RVMEA-- 345
G AIE E R + + +K + +E L KRV + K +V+EA
Sbjct: 142 GRAIEDEARFGRIRDLEAKHFKKNV-----------EEQLNKRVGHVYKKAFMQVVEADM 190
Query: 346 --QKLLKNEETKPWGRDTQAKLGSRLVELLIETAYVQHPVNPADYSPPDVRPAFRHRFKT 403
+ LL E W ++ +G R +E+LIE+ + R
Sbjct: 191 LSKGLLGGEAWSSWHKEDSIHVGVRCIEMLIEST--------------GMVSLHRQNAGV 236
Query: 404 ILKHPGQKTTKRYGVVECDPLVLEGLDRSAKHM--LIP-YVPMLVPPKKWKGYNKGGYLF 460
+ GQ + +E P E + A + + P + P +V PK W G GGY
Sbjct: 237 V----GQDSE----TIELAPEYAEAIATRAGALAGISPMFQPCVVLPKPWTGITGGGYWA 288
Query: 461 ---LPSYVMRTHGSRKQQEALKSVTGNCMKKVFEALDTLGSTKWRVNKQVLSVLESI--W 515
P ++RTH + AL M +V++A++ +T W++NK+VL+V I W
Sbjct: 289 NGRRPLALVRTHSKK----ALMRYEDVYMPEVYKAINIAQNTAWKINKKVLAVANVITKW 344
Query: 516 VSGG-NIAGLVDRNDVLIPEKPLSEDMT--EVQKWKWSVRKAKKINQERHSQRCDTELKL 572
++R + +P KP + DM + WK + + ++ R S+R E L
Sbjct: 345 KHCPVEYIPAIEREE--LPMKPENIDMNPEALIAWKRAAAAVYRKDKARKSRRISLEFML 402
Query: 573 SVARRMKDEEGFYYPHNLDFRGRAYPMHPHLNHLSSDVCRGVLEFAEGRPLGKSGLRWLK 632
A + + + ++P+N+D+RGR Y + N +D+ +G+L A+G+P+GK G WLK
Sbjct: 403 EQANKFANHKAIWFPYNMDWRGRVYAV-SMFNPQGNDMTKGLLTLAKGKPIGKEGYYWLK 461
Query: 633 IHLANLFSGGVEKLSHDGRLAFVENHLYEIFDSAENPINGSRWWLTAEDPFQCLAACINL 692
IH AN GV+K+ R+ F+E + I A++P+ + WW + PF LA C
Sbjct: 462 IHGAN--CAGVDKVPFPERIKFIEENHENIIACAKSPLENT-WWAEQDSPFCFLAFCFEY 518
Query: 693 SEALKSSSPHSVISH---LPIHQDGSCNGLQHYAALGRNTLEAAAVNLVAGEKPADVYSE 749
+ H +S+ LP+ DGSC+G+QH++A+ R+ + AVNL+ E D+Y
Sbjct: 519 A-----GVQHHGLSYNCSLPLAFDGSCSGIQHFSAMLRDEVGGRAVNLLPSETVQDIYGI 573
Query: 750 IAVRVHEIMKRDSNKDPSKH-------------------PQALLAKILIDQVDRKLVKQT 790
+A +V+EI++ D+ +AL + L V R + K++
Sbjct: 574 VAKKVNEILQADAINGTDNEVVTVTDENTGEISEKVKLGTKALAGQWLAYSVTRSVTKRS 633
Query: 791 VMTSVYGVTFVGAREQIKRRLEEKGHITDDRQLFA----AACYAAKVTLTALGEIFEAAR 846
VMT YG G R+Q+ + + +F AA Y AK+ ++ AA
Sbjct: 634 VMTLAYGSKEFGFRQQVLEDTIQPAIDSGKGLMFTQPNQAAGYMAKLIWESVSVTVVAAV 693
Query: 847 SIMGWLGDCAKVIASENQ------------PVRWTTPLGLPVVQPYCK------NERHLI 888
M WL AK++A+E + V W TP G PV Q Y K N L
Sbjct: 694 EAMNWLKSAAKLLAAEVKDKKTGEILRKRCAVHWVTPDGFPVWQEYKKPIQTRLNLMFLG 753
Query: 889 RTSLQVLALQREGNLVKIRKQRTAFPPNFVHSLDGSHMMMTAV 931
+ LQ + + + KQ + PNFVHS DGSH+ T V
Sbjct: 754 QFRLQPTINTNKDSEIDAHKQESGIAPNFVHSQDGSHLRKTVV 796
>gi|194100256|ref|YP_002003454.1| gp1 [Enterobacteria phage BA14]
gi|193201251|gb|ACF15731.1| gp1 [Enterobacteria phage BA14]
Length = 883
Score = 231 bits (590), Expect = 1e-57, Method: Compositional matrix adjust.
Identities = 208/705 (29%), Positives = 329/705 (46%), Gaps = 106/705 (15%)
Query: 286 AVHIGMAIEQEIRIHSFL-EKTKNYKRKKIIADTEEVLSKEKELLRKRVNSLIKSKRVME 344
A IG +IE E+R E+ K++K +E L+K ++ K+ ++++
Sbjct: 139 ATKIGRSIEDELRFGRIRDEEAKHFKNH-----VQEALNKRVGIVYKKAFMQAVEGKMLD 193
Query: 345 AQKLLKNEETKPWGRDTQAKLGSRLVELLI-ETAYVQHPVNPADYSPPDVRPAFRHRFKT 403
A +L T W + +G R++ELLI T V+
Sbjct: 194 AGQLQTKWTT--WTPEESIHVGVRMLELLIGSTGLVE----------------------- 228
Query: 404 ILKHPGQKTTKRYG-VVECDPLVLEGLDRSAKHM--LIP-YVPMLVPPKKWKGYNKGGYL 459
L P ++ G ++ ++ L + A + + P Y P +VPPK W GGY
Sbjct: 229 -LHRPFAGNVEKDGEYIQLTEQYVDLLSKRAGALAAIAPMYQPCVVPPKPWTSPVGGGYW 287
Query: 460 FL---PSYVMRTHGSRKQQEALKSVTGNCMKKVFEALDTLGSTKWRVNKQVLSVLESI-- 514
P ++RT GS+K E V M +V++A++ +T W++NK+VL+V+ I
Sbjct: 288 AAGRKPLSLVRT-GSKKGLERYNDV---YMPEVYKAVNIAQNTPWKINKKVLAVVNEIVN 343
Query: 515 W--VSGGNIAGLVDRNDVLIPEKPLSEDMTEVQKWKWSVRKAKKINQE--RHSQRCDTEL 570
W ++ L +R + +P KP D E W + +E R S+R E
Sbjct: 344 WKHCPVDDVPAL-ERGE--LPIKPEDIDTNEAALKAWKKAASAIYRKEKARVSRRMSMEF 400
Query: 571 KLSVARRMKDEEGFYYPHNLDFRGRAYPMHPHLNHLSSDVCRGVLEFAEGRPLGKSGLRW 630
L A + + ++P N+D+RGR Y + P N +D+ +G+L A+G+P+G G W
Sbjct: 401 MLGQANKFAQFKAIWFPMNMDWRGRVYAV-PMFNPQGNDMTKGLLTLAKGKPIGVDGYYW 459
Query: 631 LKIHLANLFSGGVEKLSHDGRLAFVENHLYEIFDSAENPINGSRWWLTAEDPFQCLAACI 690
LKIH AN + GV+K+ R+ F++++ I A +PI + WW + PF LA C
Sbjct: 460 LKIHGAN--TAGVDKVDFAERIKFIDDNHENIMSVAADPI-ANTWWAEQDSPFCFLAFCF 516
Query: 691 NLSEALKSSSPHSVISHLPIHQDGSCNGLQHYAALGRNTLEAAAVNLVAGEKPADVYSEI 750
+ ++ LP+ DGSC+G+QH++A+ R+ + AVNL+ ++ D+Y +
Sbjct: 517 EYAGVQHHGMKYNC--SLPLAFDGSCSGIQHFSAMLRDEIGGRAVNLLPSKEVQDIYRIV 574
Query: 751 AVRVHEIMKRD------------SNKDPSK-------HPQALLAKILIDQVDRKLVKQTV 791
A RV+EI+K+D +NKD + + L + L V RK+ K++V
Sbjct: 575 AERVNEILKQDVINGTDNEVEIVTNKDTGEITEKLKLGTKELAGQWLAYGVTRKVTKRSV 634
Query: 792 MTSVYGVTFVGAREQIKRRLEE--KGHITDDRQLF-----AAACYAAKVTLTALGEIFEA 844
MT YG G R+Q+ LE+ + I D + L AA Y AK+ A+ A
Sbjct: 635 MTLAYGSKEYGFRDQV---LEDTIQPAIDDGKGLMFTQPNQAAGYMAKLIWNAVTVTVVA 691
Query: 845 ARSIMGWLGDCAKVIASENQ------------PVRWTTPLGLPVVQPYCK------NERH 886
A M WL AK++A+E + V W TP G PV Q Y K N
Sbjct: 692 AVEAMNWLKSAAKLLAAEVKDKKTKEVLRKRCAVHWVTPDGFPVWQEYKKPVQTRLNLMF 751
Query: 887 LIRTSLQVLALQREGNLVKIRKQRTAFPPNFVHSLDGSHMMMTAV 931
L + LQ + + + RKQ + PNFVHS+DGSH+ MT V
Sbjct: 752 LGQIRLQPTVNTNKDSGIDARKQESGIAPNFVHSMDGSHLRMTVV 796
>gi|30387455|ref|NP_848264.1| RNA polymerase [Yersinia phage phiA1122]
gi|30314092|gb|AAP20500.1| RNA polymerase [Yersinia phage phiA1122]
gi|432142747|gb|AGB07325.1| RNA polymerase [Yersinia phage R]
Length = 883
Score = 231 bits (590), Expect = 1e-57, Method: Compositional matrix adjust.
Identities = 220/817 (26%), Positives = 372/817 (45%), Gaps = 115/817 (14%)
Query: 178 LRRRQVKQETEAWERMVDEYKELEAKMIEKRL--------APNLPHIKGLFLGWFGPLSE 229
L R Q+ E E++E ++ KM E++L A P I L +++
Sbjct: 32 LAREQLALEHESYEMGEARFR----KMFERQLKAGEVADNAAAKPLITTLLPKMIARIND 87
Query: 230 AIEREQKMQRTKKQKAAYAPHIELLPADKVAVIVMHKMMGLVMAGHEDRCVQVVQAAVHI 289
E E K +R K+ A ++ + + VA I + + + + ++ VQ V +A I
Sbjct: 88 WFE-EVKAKRGKRPTAF--QFLQEIKPEAVAYITIKTTLACLTSA-DNTTVQAVASA--I 141
Query: 290 GMAIEQEIRIHSFLEKTKNYKRKKIIADTEEVLSKE-KELLRKRVNSLIKSKRVMEAQKL 348
G AIE E R + ++ + K + EE L+K + +K ++++ M ++ L
Sbjct: 142 GRAIEDEAR----FGRIRDLEAKHFKKNVEEQLNKRVGHVYKKAFMQVVEAD--MLSKGL 195
Query: 349 LKNEETKPWGRDTQAKLGSRLVELLIETAYVQHPVNPADYSPPDVRPAFRHRFKTILKHP 408
L E W ++ +G R +E+LIE+ + VN HR +
Sbjct: 196 LGGEAWSSWHKEDSIHVGVRCIEMLIESTGM---VN-------------LHRQNAGVVGQ 239
Query: 409 GQKTTKRYGVVECDPLVLEGLDRSAKHM--LIP-YVPMLVPPKKWKGYNKGGYLF---LP 462
+T +E P E + A + + P + P +VPPK W G GGY P
Sbjct: 240 DSET------IELTPEYAEAIATRAGALAGISPMFQPCVVPPKPWTGITGGGYWANGRRP 293
Query: 463 SYVMRTHGSRKQQEALKSVTGNCMKKVFEALDTLGSTKWRVNKQVLSVLESI--W--VSG 518
++RTH + AL M +V++A++ +T W++NK+VL+V I W
Sbjct: 294 LALVRTHSKK----ALMRYEDVYMPEVYKAINIAQNTAWKINKKVLAVANVITKWKHCPV 349
Query: 519 GNIAGLVDRNDVLIPEKPLSEDMTEVQKWKWSVRKAKKINQERHSQRCDTELKLSVARRM 578
+I ++R ++ + + + + + WK + + ++ R S+R E L A +
Sbjct: 350 EDIPA-IEREELPMKPEDIDTNPEALTAWKRAAAAVYRKDKARKSRRISLEFMLEQANKF 408
Query: 579 KDEEGFYYPHNLDFRGRAYPMHPHLNHLSSDVCRGVLEFAEGRPLGKSGLRWLKIHLANL 638
+ + ++P+N+D+RGR Y + N +D+ +G+L A+G+P+GK G WLKIH AN
Sbjct: 409 ANHKAIWFPYNMDWRGRVYAVS-MFNPQGNDMTKGLLTLAKGKPIGKEGYYWLKIHGAN- 466
Query: 639 FSGGVEKLSHDGRLAFVENHLYEIFDSAENPINGSRWWLTAEDPFQCLAACINLSEALKS 698
GV+K+ R+ F+E++ I A++P+ + WW + PF LA C +
Sbjct: 467 -CAGVDKVPFPERIKFIEDNHENIMACAKSPLENT-WWAEQDSPFCFLAFCFEYA----- 519
Query: 699 SSPHSVISH---LPIHQDGSCNGLQHYAALGRNTLEAAAVNLVAGEKPADVYSEIAVRVH 755
H +S+ LP+ DGSC+G+QH++A+ + + AVNL+ D+Y +A +V+
Sbjct: 520 GVQHHGLSYNCSLPLAFDGSCSGIQHFSAMLLDEVGGLAVNLLPSATVQDIYGIVAKKVN 579
Query: 756 EIMKRD------------SNKDPSKHPQ-------ALLAKILIDQVDRKLVKQTVMTSVY 796
I++ D ++++ + P+ AL + L V R + K++VMT Y
Sbjct: 580 VILQADVINGTDNEVVTVTDENTGEIPEKVKLGTKALAGQWLAYGVTRSVTKRSVMTLAY 639
Query: 797 GVTFVGAREQIKRRLEEKGHITDDRQLFA----AACYAAKVTLTALGEIFEAARSIMGWL 852
G G R+Q+ + + +F AA Y AK+ A+ AA M WL
Sbjct: 640 GSKEFGFRQQVLEDTIQPAIDSGKGLMFTQPNQAAGYMAKLIWEAVSVTVVAAVEAMNWL 699
Query: 853 GDCAKVIASENQ------------PVRWTTPLGLPVVQPYCK------NERHLIRTSLQV 894
AK++A+E + V W TP G PV Q Y K N L + LQ
Sbjct: 700 KSAAKLLAAEVKDKKTGEILRKRCAVHWVTPDGFPVWQEYKKPIQTRLNLMFLGQFRLQP 759
Query: 895 LALQREGNLVKIRKQRTAFPPNFVHSLDGSHMMMTAV 931
+ + + KQ + PNFVHS DGSH+ T V
Sbjct: 760 TINTNKDSEIDAHKQESGIAPNFVHSQDGSHLRKTVV 796
>gi|18250966|dbj|BAB83932.1| T7 phage-type RNA polymerase [Adiantum capillus-veneris]
Length = 164
Score = 231 bits (589), Expect = 2e-57, Method: Compositional matrix adjust.
Identities = 107/158 (67%), Positives = 128/158 (81%), Gaps = 1/158 (0%)
Query: 787 VKQTVMTSVYGVTFVGAREQIKRRLEEKGHITDDRQLFAAACYAAKVTLTALGEIFEAAR 846
VKQTVMTSVYGVT+VGAR QI RL+E+ I DD+Q F +CYAAK TL ALGE+F AAR
Sbjct: 1 VKQTVMTSVYGVTYVGARAQIMNRLQERPSINDDKQAFNLSCYAAKTTLEALGEMFTAAR 60
Query: 847 SIMGWLGDCAKVIASENQPVRWTTPLGLPVVQPYCKNERHLIRTSLQVLALQREGNL-VK 905
IMGWLGDCAK++AS+NQ V+WTTPLGLPVVQPY K +R L+RTSLQ+LAL + +
Sbjct: 61 IIMGWLGDCAKIVASQNQSVKWTTPLGLPVVQPYRKPQRILVRTSLQILALTDSNDTNIM 120
Query: 906 IRKQRTAFPPNFVHSLDGSHMMMTAVACRDAGLHFAGL 943
+R+Q+ AFPPNFVHSLD +HMMM A+AC AGL FAG+
Sbjct: 121 VRRQKYAFPPNFVHSLDSTHMMMAAIACSKAGLTFAGV 158
>gi|387941817|gb|AFK13398.1| DNA-directed RNA polymerase [Yersinia phage YpP-R]
Length = 883
Score = 228 bits (582), Expect = 9e-57, Method: Compositional matrix adjust.
Identities = 222/822 (27%), Positives = 364/822 (44%), Gaps = 125/822 (15%)
Query: 178 LRRRQVKQETEAWERMVDEYKELEAKMIEKRL--------APNLPHIKGLFLGWFGPLSE 229
L R Q+ E E++E ++ KM E++L A P I L +++
Sbjct: 32 LAREQLALEHESYEMGEARFR----KMFERQLKAGEVADNAAAKPLITTLLPKMIARIND 87
Query: 230 AIEREQKMQRTKKQKAAYAPHIELLPADKVAVIVMHKMMGLVMAGHEDRCVQVVQAAVHI 289
E E K +R K+ A ++ + + VA I + + + + ++ VQ V +A I
Sbjct: 88 WFE-EVKAKRGKRPTAF--QFLQEIKPEAVAYITIKTTLACLTSA-DNTTVQAVASA--I 141
Query: 290 GMAIEQEIRIHSFLEKTKNYKRKKIIADTEEVLSKEKELLRKRVNSLIKSK--RVMEA-- 345
G AIE E R + + +K + +E L KRV + K +V+EA
Sbjct: 142 GRAIEDEARFGRIRDLEAKHFKKNV-----------EEQLNKRVGHVYKKAFMQVVEADM 190
Query: 346 --QKLLKNEETKPWGRDTQAKLGSRLVELLIETAYVQHPVNPADYSPPDVRPAFRHRFKT 403
+ LL E W ++ +G R +E+LIE+ + VN HR
Sbjct: 191 LSKGLLGGEAWSSWHKEDSIHVGVRCIEMLIESTGM---VN-------------LHRQNA 234
Query: 404 ILKHPGQKTTKRYGVVECDPLVLEGLDRSAKHM--LIP-YVPMLVPPKKWKGYNKGGYLF 460
+ +T +E P E + A + + P + P +VPPK W G GGY
Sbjct: 235 GVVGQDSET------IELTPEYAEAIATRAGALAGISPMFQPCVVPPKPWTGITGGGYWA 288
Query: 461 ---LPSYVMRTHGSRKQQEALKSVTGNCMKKVFEALDTLGSTKWRVNKQVLSVLESI--W 515
P ++RTH + AL M +V++A++ +T W++NK+VL+V I W
Sbjct: 289 NGRRPLALVRTHSKK----ALMRYEDVYMPEVYKAINIAQNTAWKINKKVLAVANVITKW 344
Query: 516 --VSGGNIAGLVDRNDVLIPEKPLSEDMTEVQKWKWSVRKAKKINQERHSQRCDTELKLS 573
+I ++R ++ + + + + + WK + + ++ R S+R E L
Sbjct: 345 KHCPVEDIPA-IEREELPMKPEDIDTNPEALTAWKRAAAAVYRKDKARKSRRISLEFMLE 403
Query: 574 VARRMKDEEGFYYPHNLDFRGRAYPMHPHLNHLSSDVCRGVLEFAEGRPLGKSGLRWLKI 633
A + + + ++P+N+D+RGR Y + N +D+ +G+L A+G+P+GK G WLKI
Sbjct: 404 QANKFANHKAIWFPYNMDWRGRVYAVS-MFNPQGNDMTKGLLTLAKGKPIGKEGYYWLKI 462
Query: 634 HLANLFSGGVEKLSHDGRLAFVENHLYEIFDSAENPINGSRWWLTAEDPFQCLAACINLS 693
H AN GV+K+ R+ F+E++ I A++P+ + WW + PF LA C +
Sbjct: 463 HGAN--CAGVDKVPFPERIKFIEDNHENIMACAKSPLENT-WWAEQDSPFCFLAFCFEYA 519
Query: 694 EALKSSSPHSVISH---LPIHQDGSCNGLQHYAALGRNTLEAAAVNLVAGEKPADVYSEI 750
H +S+ LP+ DGSC+G+QH++A+ + + AVNL+ D+Y +
Sbjct: 520 -----GVQHHGLSYNCSLPLAFDGSCSGIQHFSAMLLDEVGGLAVNLLPSATVQDIYGIV 574
Query: 751 AVRVHEIMKRDSNKDPSKH-------------------PQALLAKILIDQVDRKLVKQTV 791
A +V+ I++ D +AL + L V R + K++V
Sbjct: 575 AKKVNVILQADVINGTDNEVVTVTDENTGEISEKVKLGTKALAGQWLAYGVTRSVTKRSV 634
Query: 792 MTSVYGVTFVGAREQIKRRLEEKGHITDDRQLFA----AACYAAKVTLTALGEIFEAARS 847
MT YG G R+Q+ + + +F AA Y AK+ A+ AA
Sbjct: 635 MTLAYGSKEFGFRQQVLEDTIQPAIDSGKGLMFTQPNQAAGYMAKLIWEAVSVTVVAAVE 694
Query: 848 IMGWLGDCAKVIASENQ------------PVRWTTPLGLPVVQPYCK------NERHLIR 889
M WL AK++A+E + V W TP G PV Q Y K N L +
Sbjct: 695 AMNWLKSAAKLLAAEVKDKKTGEILRKRCAVHWVTPDGFPVWQEYKKPIQTRLNLMFLGQ 754
Query: 890 TSLQVLALQREGNLVKIRKQRTAFPPNFVHSLDGSHMMMTAV 931
LQ + + + KQ + PNFVHS DGSH+ T V
Sbjct: 755 FRLQPTINTNKDSEIDAHKQESGIAPNFVHSQDGSHLRKTVV 796
>gi|194100364|ref|YP_002003938.1| gp1 [Enterobacteria phage 13a]
gi|193201411|gb|ACF15888.1| gp1 [Enterobacteria phage 13a]
Length = 883
Score = 228 bits (582), Expect = 9e-57, Method: Compositional matrix adjust.
Identities = 221/822 (26%), Positives = 362/822 (44%), Gaps = 125/822 (15%)
Query: 178 LRRRQVKQETEAWERMVDEYKELEAKMIEKRL--------APNLPHIKGLFLGWFGPLSE 229
L R Q+ E E++E ++ KM E++L A P I L +++
Sbjct: 32 LAREQLALEHESYEMGEARFR----KMFERQLKAGEVADNAAAKPLITTLLPKMIARIND 87
Query: 230 AIEREQKMQRTKKQKAAYAPHIELLPADKVAVIVMHKMMGLVMAGHEDRCVQVVQAAVHI 289
E E K +R K+ A ++ + + VA I + + + ++ VQ V +A I
Sbjct: 88 WFE-EVKAKRGKRPTAF--QFLQEIKPEAVAYITIKTTLA-CLTSVDNTTVQAVASA--I 141
Query: 290 GMAIEQEIRIHSFLEKTKNYKRKKIIADTEEVLSKEKELLRKRVNSLIKSK--RVMEA-- 345
G AIE E R + + +K + +E L KRV + K +V+EA
Sbjct: 142 GRAIEDEARFGRIRDLEAKHFKKNV-----------EEQLNKRVGHVYKKAFMQVVEADM 190
Query: 346 --QKLLKNEETKPWGRDTQAKLGSRLVELLIETAYVQHPVNPADYSPPDVRPAFRHRFKT 403
+ LL E W ++ +G R +E+LIE+ + HR
Sbjct: 191 LSKGLLGGEAWSSWHKEDSIHVGVRCIEMLIESTGM----------------VSLHRQNA 234
Query: 404 ILKHPGQKTTKRYGVVECDPLVLEGLDRSAKHM--LIP-YVPMLVPPKKWKGYNKGGYLF 460
+ +T +E P E + A + + P + P +VPPK W G GGY
Sbjct: 235 GVVGQDSET------IELAPEYAEAIATRAGALAGISPMFQPCVVPPKPWTGITGGGYWA 288
Query: 461 ---LPSYVMRTHGSRKQQEALKSVTGNCMKKVFEALDTLGSTKWRVNKQVLSVLESI--W 515
P ++RTH + AL M +V++A++ +T W++NK+VL+V I W
Sbjct: 289 NGRRPLALVRTHSKK----ALMRYEDVYMPEVYKAINIAQNTAWKINKKVLAVANVITKW 344
Query: 516 --VSGGNIAGLVDRNDVLIPEKPLSEDMTEVQKWKWSVRKAKKINQERHSQRCDTELKLS 573
+I ++R ++ + + + + + WK + + ++ R S+R E L
Sbjct: 345 KHCPVEDIPA-IEREELPMKPEDIDTNPDALTAWKRAAAAVYRKDKARKSRRISLEFMLE 403
Query: 574 VARRMKDEEGFYYPHNLDFRGRAYPMHPHLNHLSSDVCRGVLEFAEGRPLGKSGLRWLKI 633
A + + + ++P+N+D+RGR Y + N +D+ +G+L A+G+P+GK G WLKI
Sbjct: 404 QANKFANHKAIWFPYNMDWRGRVYAVS-MFNPQGNDMTKGLLTLAKGKPIGKEGYYWLKI 462
Query: 634 HLANLFSGGVEKLSHDGRLAFVENHLYEIFDSAENPINGSRWWLTAEDPFQCLAACINLS 693
H AN GV+K+ R+ F+E++ I A++P+ + WW + PF LA C +
Sbjct: 463 HGAN--CAGVDKVPFPERIKFIEDNHENIMACAKSPLENT-WWAEQDSPFCFLAFCFEYA 519
Query: 694 EALKSSSPHSVISH---LPIHQDGSCNGLQHYAALGRNTLEAAAVNLVAGEKPADVYSEI 750
H +S+ LP+ DGSC+G+QH++A+ + + AVNL+ E D+Y +
Sbjct: 520 -----GVQHHGLSYNCSLPLAFDGSCSGIQHFSAMLLDEIGGRAVNLLPSETVQDIYGIV 574
Query: 751 AVRVHEIMKRDSNKDPSKH-------------------PQALLAKILIDQVDRKLVKQTV 791
A +V+ I++ D +AL + L V R + K++V
Sbjct: 575 AKKVNVILQADVINGTDNEVVTVTDENTGEISEKVKLGTKALAGQWLAYGVTRSVTKRSV 634
Query: 792 MTSVYGVTFVGAREQIKRRLEEKGHITDDRQLFA----AACYAAKVTLTALGEIFEAARS 847
MT YG G R+Q+ + + +F AA Y AK+ A+ AA
Sbjct: 635 MTLAYGSKEFGFRQQVLEDTIQPAIDSGKGLMFTQPNQAAGYMAKLIWEAVSVTVVAAVE 694
Query: 848 IMGWLGDCAKVIASENQ------------PVRWTTPLGLPVVQPYCK------NERHLIR 889
M WL AK++A+E + V W TP G PV Q Y K N L +
Sbjct: 695 AMNWLKSAAKLLAAEVKDKKTGEILRKRCAVHWVTPDGFPVWQEYKKPIQTRLNLMFLGQ 754
Query: 890 TSLQVLALQREGNLVKIRKQRTAFPPNFVHSLDGSHMMMTAV 931
LQ + + + KQ + PNFVHS DGSH+ T V
Sbjct: 755 FRLQPTINTNKDSEIDAHKQESGIAPNFVHSQDGSHLRKTVV 796
>gi|158425231|ref|YP_001526523.1| DNA-directed RNA polymerase [Azorhizobium caulinodans ORS 571]
gi|158332120|dbj|BAF89605.1| DNA-directed RNA polymerase [Azorhizobium caulinodans ORS 571]
Length = 841
Score = 228 bits (582), Expect = 1e-56, Method: Compositional matrix adjust.
Identities = 167/555 (30%), Positives = 257/555 (46%), Gaps = 74/555 (13%)
Query: 440 YVPMLVPPKKWK-----GYNKGGYLFLPSYVMRTHGSRKQQEALKSVTGNCMKKVFEALD 494
++P ++PPK+W GY+ G LP R + L+ + G + V+ A++
Sbjct: 233 FLPTIIPPKRWTTPFDGGYHSGLVQRLPFVKTR------NRNYLEELAGRDLSAVYAAVN 286
Query: 495 TLGSTKWRVNKQVLSVLESIWVSGGNIAGLVDRNDVLIPE-------------KPLSEDM 541
+ T W+VN+ VL VL+ W DR D+ P+ KP
Sbjct: 287 AMQETPWQVNRDVLRVLKEAW----------DR-DLKSPKLKLPPRDPLDLPPKPADIAT 335
Query: 542 TEVQK--WKWSVRKAKKINQERHSQRCDTELKLSVARRMKDEEGFYYPHNLDFRGRAYPM 599
EV + WK + N + S+R + +A + + Y+P+ LDFRGR Y +
Sbjct: 336 NEVSRKEWKKAASLIHAANAKLKSKRVQIRKIIELAGQFSEYAEIYFPYQLDFRGRVYAV 395
Query: 600 HPHLNHLSSDVCRGVLEFAEGRPLGKS-GLRWLKIHLANLFSGGVEKLSHDGRLAFVENH 658
LN D + +L FA G+P+G WL IH AN++ G +K S + R+++VE
Sbjct: 396 PMFLNPQGPDHAKALLTFARGKPIGDGVAAGWLAIHGANVY--GYDKASLEDRISWVEER 453
Query: 659 LYEIFDSAENPIN-GSRWWLTAEDPFQCLAACINLSEALKSSSPHSVISHLPIHQDGSCN 717
I A +P G +W A+ P+Q LA C + L+ + +S LP+ DGSCN
Sbjct: 454 NALIASVAADPWGEGFEFWTEADKPWQFLAFCFEWAGFLREGFDY--VSTLPVALDGSCN 511
Query: 718 GLQHYAALGRNTLEAAAVNLVAGEKPADVYSEIAVRVHEIMK------------------ 759
GLQHY+A R+ + AAVNLV KP D+Y+ +A ++
Sbjct: 512 GLQHYSAALRDPVGGAAVNLVPSGKPQDIYARVAEVALGLVTAFVCPNGSTTGTIPNLSR 571
Query: 760 -RDSNKDPSKHPQALLAKILIDQVDRKLVKQTVMTSVYGVTFVGAREQIKRRLEEKGH-- 816
R + + + + L +DRK+ K+ VMT YG T RE I+ + EK
Sbjct: 572 LRKTWAEHGIDELDMANRWLAFGIDRKVTKRAVMTLPYGSTQYSCREFIEEAVREKVEEG 631
Query: 817 ------ITDDRQLFAAACYAAKVTLTALGEIFEAARSIMGWLGDCAKVIASENQPVRWTT 870
+ D +F A + + A+GE+ +AAR M WL +CA++ A+E PV W T
Sbjct: 632 KPNPFAVGDSDGIFKATLWLQPLVWQAIGEVVKAARVGMDWLKECARLAAAEGLPVIWQT 691
Query: 871 PLGLPVVQPYCKNERHLIRTSLQV---LALQREGNLVKIRKQRTAFPPNFVHSLDGSHM- 926
P G V Q Y + I T L L ++ E + + R+Q+ PN+VHS+D + M
Sbjct: 692 PDGFLVQQSYRNSSARRIDTHLDGRVRLIIREELDTIDKRRQQQGVAPNWVHSMDATAMR 751
Query: 927 MMTAVACRDAGLHFA 941
M +A + HFA
Sbjct: 752 MFINLALTNGMQHFA 766
>gi|167600472|ref|YP_001671971.1| phage-specific RNA polymerase [Pseudomonas phage LUZ19]
gi|161168335|emb|CAP45499.1| phage-specific RNA polymerase [Pseudomonas phage LUZ19]
Length = 815
Score = 228 bits (581), Expect = 1e-56, Method: Compositional matrix adjust.
Identities = 163/522 (31%), Positives = 248/522 (47%), Gaps = 34/522 (6%)
Query: 443 MLVPPKKWKGYNKGGYLFLPS-----YVMRT--HGSRKQQEALKSVTGNCMKKVFEALDT 495
ML PP+ W + GGY + V RT R +Q L+ + + M +V+EA++
Sbjct: 233 MLAPPRPWNDWCDGGYYSAKAQKHHVLVRRTKHQTKRARQMQLRHLGRDKMPRVYEAVNA 292
Query: 496 LGSTKWRVNKQVLSVLESIWVSGGNIAGLVDRNDVLIPEKPLSED----------MTEVQ 545
L S + +N V ++E ++ SGG + G+ R PE PL ++ +
Sbjct: 293 LQSVAYEINHDVYEIIERVFTSGGGVLGIPQRTYPDKPEFPLGDEWAKENASEQELEAFN 352
Query: 546 KWKWSVRKAKKINQERHSQRCDTELKLSVARRMKDEEGFYYPHNLDFRGRAYPMHPHLNH 605
+WK SV + +E H+ + L R + Y+P ++D RGR Y N
Sbjct: 353 RWKRSVHRWYTGERE-HTAKLREFAALYRVVREHHGKAVYFPMHVDSRGRMYYWGTP-NP 410
Query: 606 LSSDVCRGVLEFAEGRPLGKSGLRWLKIHLANLFSGGVEKLSHDGRLAFVENHLYEIFDS 665
SD+ + L F E R LGK GL WLK+H+AN S G +K+ D R A+V+ ++ F
Sbjct: 411 QGSDIAKACLRFHEKRALGKRGLYWLKVHVAN--SLGCDKVYFDDRAAWVDER-WDDFQR 467
Query: 666 A--ENPINGSRWWLTAEDPFQCLAACINLSEALKSSSPHSVISHLPIHQDGSCNGLQHYA 723
A E P N + E P +A + L A S P S +H D +C+GLQHY+
Sbjct: 468 ALDEGPENYPGLFPEDESPLCAIAGLLELRAAYASGQPERYQSGFIVHMDATCSGLQHYS 527
Query: 724 ALGRNTLEAAAVNLV-AGEKPADVYSEIAVRVHEIMKRDSNKDPSKHPQALLAKILIDQ- 781
A+ R+ + A VNL+ G AD+YS + V E + RD +A +L D+
Sbjct: 528 AILRDEVGGAYVNLLPPGLAKADIYSRVLALVAESLARDRE---GAEGEARGYAVLWDKA 584
Query: 782 -VDRKLVKQTVMTSVYGVTFVGAREQIKRRLEEKG-HITDDRQLFAAACYAAKVTLTALG 839
+ R L K+ MT VYG TF G + L+E G I + + Y A + L A+
Sbjct: 585 GLSRSLTKKPCMTLVYGTTFKGVVDHCLDYLDEAGLEIPEGIPSYRLGSYMATLILDAIR 644
Query: 840 EIFEAARSIMGWLGDCAKVIASENQPVRWTTPLGLPVVQPYCKNERHLIR---TSLQVLA 896
E +A M WL A+ + ++ + WTTPLG+ V Q Y K E +R +++ +
Sbjct: 645 ETVPSAVFAMEWLQRLARALPDASKDLHWTTPLGMQVFQSYPKTEEVRVRLRAEAVEYVT 704
Query: 897 LQREGNLVKIRKQRTAFPPNFVHSLDGSHMMMTAVACRDAGL 938
L + + + PNFVH LD SH+ +TA+AC G+
Sbjct: 705 LYEAKDELDPVRNANGIAPNFVHGLDSSHLGLTALACAAEGI 746
>gi|395750053|ref|XP_003779053.1| PREDICTED: LOW QUALITY PROTEIN: DNA-directed RNA polymerase,
mitochondrial [Pongo abelii]
Length = 1169
Score = 228 bits (581), Expect = 1e-56, Method: Compositional matrix adjust.
Identities = 151/503 (30%), Positives = 253/503 (50%), Gaps = 43/503 (8%)
Query: 229 EAIEREQKMQRTKKQKAAYA------PHIELLPADKVAVIVMHKMMGLVMAGHEDRCVQV 282
+A+ R + + + ++A Y P + LL +V +++ + L G +
Sbjct: 443 KALCRALRDTKNRLERAVYEGRFSLYPFLCLLDEREVVRMLLQVLQALPAQGESFTTLAR 502
Query: 283 VQAAVHIGMAIEQEIRIHSFLEKTKNYKRKKII---ADTEEVLSKEKELLRKRVNSLIKS 339
+A + Q R+ ++ +N+ RK + DTE V +
Sbjct: 503 ELSARTFSRHVVQRQRLSGQVQALQNHYRKYLCLLACDTE-------------VPNPCLP 549
Query: 340 KRVMEAQKLLKNEETKPWGRDTQAKLGSRLVELLIETAYVQHPVNPADYSPPDVRPAFRH 399
++ EA K +PW Q +LG L E+L++ + ++ +P
Sbjct: 550 RQYWEALGAPKALREQPWPLPVQMELGKLLAEMLVQATQMPCSLD---------KPHRSS 600
Query: 400 RFKTILKHPGQ-KTTKRYGVVECDPLVLEGLDRSAKHMLI---PYVPMLVPPKKWKGYNK 455
R +L H + ++ G+++ P ++ L+++A+ LI VPML PP W +
Sbjct: 601 RLVPVLYHVYSFRNVQQIGILKPHPAYVQLLEKAAEPTLIFEAVDVPMLCPPLPWTSPHS 660
Query: 456 GGYLFLPSYVMRT-HGSRKQQEALKSVTGNCMKKVFEALDTLGSTKWRVNKQVLSVLESI 514
G +L P+ +MRT G+ + QE L++ + +AL LG+ WRVN +VL ++ +
Sbjct: 661 GAFLLSPTKLMRTVEGATQHQELLETCPPTALHGALDALTQLGNCAWRVNGRVLDLVLQL 720
Query: 515 WVSGGNIAGLVDRNDVLIPEK-----PLSEDMTEVQKWKWSVRKAKKINQERHSQRCDTE 569
+ + G V P+ P S + + + +K+ +E HS R +
Sbjct: 721 FQAKGCPQLGVPAPPSEAPQPAEAHLPHSAAPARKAEVRRGLAHCQKVAREMHSLRAEAL 780
Query: 570 LKLSVARRMKDEEGFYYPHNLDFRGRAYPMHPHLNHLSSDVCRGVLEFAEGRPLGKSGLR 629
+LS+A+ ++D F+ PHN+DFRGR YP PH NHL SDV R +LEFA+GRPLG GL
Sbjct: 781 YRLSLAQHLRDRV-FWLPHNMDFRGRTYPCPPHFNHLGSDVARALLEFAQGRPLGPRGLD 839
Query: 630 WLKIHLANLFSGGVEKLSHDGRLAFVENHLYEIFDSAENPINGSRWWLTAEDPFQCLAAC 689
WLKIHL NL +G ++ RLAF E + +I DSA+ P+ G +WW+ AE+P+Q LA C
Sbjct: 840 WLKIHLVNL-TGLKKREPLRKRLAFAEEVMDDILDSADQPLTGRKWWMGAEEPWQTLACC 898
Query: 690 INLSEALKSSSPHSVISHLPIHQ 712
+ +++A+++S P + +SHLP+HQ
Sbjct: 899 MEVAKAVRASDPAAYVSHLPVHQ 921
Score = 103 bits (258), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 59/152 (38%), Positives = 86/152 (56%), Gaps = 9/152 (5%)
Query: 798 VTFVGAREQIKRRLEEKGHITDDRQLFA--AACYAAKVTLTALGEIFEAARSIMGWLGDC 855
VT G R QI++RL E ++D Q F A+ Y + +L E+F R+I WL +
Sbjct: 939 VTRYGGRLQIEKRLRE---LSDFPQEFVWEASHYLVRQVFKSLQEMFSGTRAIQHWLTES 995
Query: 856 AKVIASENQPVRWTTPLGLPVVQPY-CKNERHLIRTSLQVLALQREGNLVK---IRKQRT 911
A++I+ V W TPLG+PV+QPY +++ I +Q + G+ + RKQ+
Sbjct: 996 ARLISHTGFVVEWVTPLGVPVIQPYRLESKVKQIGGGIQSITYTHNGDNSRKPNTRKQKN 1055
Query: 912 AFPPNFVHSLDGSHMMMTAVACRDAGLHFAGL 943
FPPNF+HSLD SHMM+TA+ C GL F +
Sbjct: 1056 GFPPNFIHSLDSSHMMLTALHCYRKGLTFVSV 1087
>gi|238695622|ref|YP_002922649.1| P35 [Xanthomonas phage phiL7]
gi|190343989|gb|ACE75775.1| P35 [Xanthomonas phage phiL7]
Length = 804
Score = 227 bits (579), Expect = 2e-56, Method: Compositional matrix adjust.
Identities = 171/530 (32%), Positives = 254/530 (47%), Gaps = 54/530 (10%)
Query: 440 YVPMLVPPKKWKGYNKGGYLF-----LPSYVMRTHGSRKQQEALKSVTGNCMKKVFEALD 494
++P + PP W +++GG+ L Y ++TH + L +T K L+
Sbjct: 227 FLPCVEPPIPWTKHDEGGWHTDEMRRLMPYAIKTHAGVRHLLDLADLT-----KELACLN 281
Query: 495 TLGSTKWRVNKQVLSVLESIWVSGGNIAGLVDRNDVLI------PEKP--LSEDMT---- 542
L TKWR+N+ +LE++ + GG I D +VL PE+P L E M
Sbjct: 282 ALQETKWRINR---PILEALRLMGGKI----DLGEVLAQGEEPRPERPEWLGERMKVEAM 334
Query: 543 ------EVQKWKWSVRKAKKINQERHSQRCDTELKLSVARRMKDEEGFYYPHNLDFRGRA 596
E + WK K + +ER + + VA + + + ++ + DFRGR
Sbjct: 335 DVDQAKEFRAWKRLTAKWHRKKKERAVKWGRYRHAMQVATKFVEYDALHFVYFCDFRGRK 394
Query: 597 YPMHPHLNHLSSDVCRGVLEFAEGRPLGKSGLR-WLKIHLANLFSGGVEKLSHDGRLAFV 655
Y M ++ SD+ + +L FAEG+PL G + W +I AN + G +K+ GR+ +V
Sbjct: 395 YAMTTGVSPQGSDLQKALLHFAEGKPLHTQGAKDWFRITGANRY--GYDKVDLQGRIDWV 452
Query: 656 ENHLYEIFDSAENPI-NGSRWWLTAEDPFQCLAACINLSEALKSSSPHSVISHLPIHQDG 714
H +I +A +P+ NG WWL P Q LA C +E S +SHL DG
Sbjct: 453 REHHEDILAAAGDPVANG--WWLKGSKPLQFLAWCFEYAEWQVFGD--SFLSHLSAGMDG 508
Query: 715 SCNGLQHYAALGRNTLEAAAVNLVAGEKPADVYSEIAVRVHEIMKRDSNKDPSKHPQALL 774
SCNGLQ+++A+ R+ + A NLV KP D+Y RV E+ + P P A
Sbjct: 509 SCNGLQNFSAMLRDEVGGKATNLVPMPKPQDIYG----RVGEVTTTLLLEVPPD-PLAFH 563
Query: 775 AKILIDQVDRKLVKQTVMTSVYGVTFVGAREQIKRRLEEKGHIT--DDRQLFAAACYAAK 832
+ L V+R LVK++VMT YG T E I + +G I D+ + AA Y +K
Sbjct: 564 NRWLAHGVNRSLVKRSVMTLPYGSTRFSCAEFIMQDYLREGLIPEFDELEHAKAAQYLSK 623
Query: 833 VTLTALGEIFEAARSIMGWLG-DCAKVIASENQPVRWTTPLGLPVVQPYCKNERHLIRTS 891
A+G++ AR M WL +++I + + W TP G PVVQ Y + H IRT
Sbjct: 624 FVWKAIGDVVVKARGAMEWLQVSASELIDAGESRICWVTPTGFPVVQVYWEENVHNIRTK 683
Query: 892 L---QVLALQREGNLVKIRKQRTAFPPNFVHSLDGSHMMMTAVACRDAGL 938
L L ++ E + R+ R PNFVHSLD SH+ AC G+
Sbjct: 684 LCGRARLFVRTEADTPDKRRHRNGISPNFVHSLDASHLTSVTNACTALGI 733
>gi|448937046|gb|AGE60589.1| RNA polymerase [Pelagibacter phage HTVC019P]
Length = 814
Score = 227 bits (578), Expect = 3e-56, Method: Compositional matrix adjust.
Identities = 190/693 (27%), Positives = 333/693 (48%), Gaps = 66/693 (9%)
Query: 266 KMMGLVMAGHEDRCV----QVVQAAVHIGMAIEQEIRIHSFLEKTKNYKRKKIIADTEEV 321
K++ L+ A H + + A+ +G IE EI + KN+K + E
Sbjct: 90 KIVALITAKHVINTITNTKNLTACAITLGGRIETEISL-------KNFKG----LNPELY 138
Query: 322 LSKEKELLRKRVNSLIKSKRVMEAQKLLKNEETKPWGRDTQAKLGSRLVELLIETAYVQH 381
+ +K+L ++ N K +++ E+ K + + W + +G LV LLIE+ +
Sbjct: 139 ETVKKDLDKRSWNYNYKRRKLRESAKRDEVMRWEEWTTTERLHVGMELVSLLIESTGLIE 198
Query: 382 PVNPADYSPPDVRPAFRHRFKTILKHPGQKTTKRYGVVECDPLVLEGLDRSAKHMLIPYV 441
+H+ KT+ TK + ++ ++ + + Y+
Sbjct: 199 IATE------------QHKHKTVKVIKQTAKTKDW---------IDNRNKFNELLNPEYL 237
Query: 442 PMLVPPKKWKGYNKGGYLFLPSYVMRTHGSRKQQEALKSVTGNC-MKKVFEALDTLGSTK 500
M++PPK G+ + S + +++ + NC M +V A++ + ST
Sbjct: 238 MMVMPPKSVVDGKVTGHGYWTSEMPELDLVKQKGKKFNKEMENCAMPEVTTAVNLMQSTA 297
Query: 501 WRVNKQVLSVLESIWVSGGNIAGLVDRNDVLIPEKP--LSEDMTEVQKWKWSVRKAKKIN 558
+++N +LSV+++ W G +I G+ ++ +P KP + + ++K+K N
Sbjct: 298 YKINPFILSVMQNAWDKGLSIGGMPPIKNLDLPNKPHDIETNPEALKKFKKDSVIVHTEN 357
Query: 559 QERHSQRCDTELKLSVARRMKDEEGFYYPHNLDFRGRAYPMHPHLNHLSSDVCRGVLEFA 618
S+R + +A + KD Y+P LDFRGRAY + LN+ S + + +L F+
Sbjct: 358 NRMVSKRLLYAKIIWLAEKFKDYATLYFPLQLDFRGRAYCVPAFLNYQSINGAKALLNFS 417
Query: 619 EGRPLGKS--GLRWLKIHLANLFSGGVEKLSHDGRLAFVENHLYEIFDSAENPINGSRWW 676
+G+ + K G+ WL +H +N++ G +K+S + R + ++L I + AE+PI +R W
Sbjct: 418 QGKAITKENRGVFWLAVHGSNMW--GNDKVSFEDREKWSYDNLQWITECAEDPI-ANRQW 474
Query: 677 LTAEDPFQCLAACINLSEALKSSSPHSVISHLPIHQDGSCNGLQHYAALGRNTLEAAAVN 736
A++PFQ LA C ++ +SH+P++ DGSCNGLQ Y+ L ++ + VN
Sbjct: 475 EDADNPFQFLAFCDEWKRYQETGD--GFVSHIPVNVDGSCNGLQIYSLLLKDKVAGKLVN 532
Query: 737 LVAGEKPADVYSEIAVRVHEIMK-RDSNKDPSKHPQALLAKILIDQVDRKLVKQTVMTSV 795
+ E P D+Y +A V + +K + S DP L K L V R K+ +MT
Sbjct: 533 CLPSEIPQDIYQLVANEVIKTLKVKASEGDP------LAQKWLDYGVKRSTCKRPIMTIC 586
Query: 796 YGVT------FVGAREQIKRRLEEKGHITDDRQLFAAACYAAKVTLTALGEIFEAARSIM 849
YG T FV + KR+ + + H DD +F A Y +K+ ++GE ++AR M
Sbjct: 587 YGSTRYSCTDFV-VEDLTKRKDKGEMHPFDD--MFKPATYLSKIIWASIGENLKSARVGM 643
Query: 850 GWLGDCAKVIASENQPVRWTTPLGLPVVQPYCKNERHLIRTSL--QVLA--LQREGNLVK 905
+L + AKVI+ E P+ W TP+G PV Q Y + + +R+ L +V A ++ E
Sbjct: 644 DYLQNNAKVISKEGIPIHWVTPVGFPVFQYYPEMKSKRVRSHLMGEVFAPQIKEETKETD 703
Query: 906 IRKQRTAFPPNFVHSLDGSHMMMTAVACRDAGL 938
+ R A N+VHSLD + M+ T + G+
Sbjct: 704 KLRSRNAVAANYVHSLDSACMIKTVNIAKAKGI 736
>gi|387941914|gb|AFK13493.1| DNA-directed RNA polymerase [Yersinia phage YpsP-G]
Length = 903
Score = 226 bits (577), Expect = 3e-56, Method: Compositional matrix adjust.
Identities = 222/820 (27%), Positives = 367/820 (44%), Gaps = 121/820 (14%)
Query: 178 LRRRQVKQETEAWERMVDEYKELEAKMIEKRL--------APNLPHIKGLFLGWFGPLSE 229
L R Q+ E E++E ++ KM E++L A P I L +++
Sbjct: 52 LAREQLALEHESYEMGEARFR----KMFERQLKAGEVADNAAAKPLITTLLPKMIARIND 107
Query: 230 AIEREQKMQRTKKQKAAYAPHIELLPADKVAVIVMHKMMGLVMAGHEDRCVQVVQAAVHI 289
E E K +R K+ A ++ + + VA I + + + + ++ VQ V +A I
Sbjct: 108 WFE-EVKAKRGKRPTAF--QFLQEIKPEAVAYITIKTTLACLTSA-DNTTVQAVASA--I 161
Query: 290 GMAIEQEIRIHSFLEKTKNYKRKKIIADTEEVLSKE-KELLRKRVNSLIKSKRVMEAQKL 348
G AIE E R + ++ + K + EE L+K + +K ++++ M ++ L
Sbjct: 162 GRAIEDEAR----FGRIRDLEAKHFKKNVEEQLNKRVGHVYKKAFMQVVEAD--MLSKGL 215
Query: 349 LKNEETKPWGRDTQAKLGSRLVELLIETAYVQHPVNPADYSPPDVRPAFRHRFKTILKHP 408
L E W ++ +G R +E+LIE+ + VN HR +
Sbjct: 216 LGGEAWSSWHKEDSIHVGVRCIEMLIESTGM---VN-------------LHRQNAGVVGQ 259
Query: 409 GQKTTKRYGVVECDPLVLEGLDRSAKHM--LIP-YVPMLVPPKKWKGYNKGGYLF---LP 462
+T +E P E + A + + P + P +VPPK W G GGY P
Sbjct: 260 DSET------IELTPEYAEAIATRAGALAGISPMFQPCVVPPKPWTGITGGGYWANGRRP 313
Query: 463 SYVMRTHGSRKQQEALKSVTGNCMKKVFEALDTLGSTKWRVNKQVLSVLESI--W--VSG 518
++RTH + AL M +V++A++ +T W++NK+VL+V I W
Sbjct: 314 LALVRTHSKK----ALMRYEDVYMPEVYKAINIAQNTAWKINKKVLAVANVITKWKHCPV 369
Query: 519 GNIAGLVDRNDVLIPEKPLSEDMTEVQKWKWSVRKAKKINQERHSQRCDTELKLSVARRM 578
+I ++R ++ + + + + + WK + + ++ R S+R E L A +
Sbjct: 370 EDIPA-IEREELPMKPEDIDTNPEALTAWKRAAAAVYRKDKARKSRRISLEFMLEQANKF 428
Query: 579 KDEEGFYYPHNLDFRGRAYPMHPHLNHLSSDVCRGVLEFAEGRPLGKSGLRWLKIHLANL 638
+ + ++P+N+D+RGR Y + N +D+ +G+L A+G+P+GK G WLKIH AN
Sbjct: 429 ANHKAIWFPYNMDWRGRVYAVS-MFNPQGNDMTKGLLTLAKGKPIGKEGYYWLKIHGAN- 486
Query: 639 FSGGVEKLSHDGRLAFVENHLYEIFDSAENPINGSRWWLTAEDPFQCLAACINLSEALKS 698
GV+K+ R+ F+E++ I A++P+ + WW + PF LA C +
Sbjct: 487 -CAGVDKVPFPERIKFIEDNHENIMACAKSPLENT-WWAEQDSPFCFLAFCFEYA----- 539
Query: 699 SSPHSVISH---LPIHQDGSCNGLQHYAALGRNTLEAAAVNLVAGEKPADVYSEIAVRVH 755
H +S+ LP+ DGSC+G+QH++A+ + + AVNL+ D+Y +A +V+
Sbjct: 540 GVQHHGLSYNCSLPLAFDGSCSGIQHFSAMLLDEVGGLAVNLLPSATVQDIYGIVAKKVN 599
Query: 756 EIMKRDSNKDPSKH-------------------PQALLAKILIDQVDRKLVKQTVMTSVY 796
I++ D +AL + L V R + K++VMT Y
Sbjct: 600 VILQADVINGTDNEVVTVTDENTGEISEKVKLGTKALAGQWLAYGVTRSVTKRSVMTLAY 659
Query: 797 GVTFVGAREQIKRRLEEKGHITDDR-------QLFAAACYAAKVTLTALGEIFEAARSIM 849
G G R+Q+ LE+ D Q AA Y AK+ A+ AA M
Sbjct: 660 GSKEFGFRQQV---LEDTIQPVIDSGKGLMFTQPNQAAGYMAKLIWEAVSVTVVAAVEAM 716
Query: 850 GWLGDCAKVIASENQ------------PVRWTTPLGLPVVQPYCK------NERHLIRTS 891
WL AK++A+E + V W TP G PV Q Y K N L +
Sbjct: 717 NWLKSAAKLLAAEVKDKKTGEILRKRCAVHWVTPDGFPVWQEYKKPIQTRLNLMFLGQFR 776
Query: 892 LQVLALQREGNLVKIRKQRTAFPPNFVHSLDGSHMMMTAV 931
LQ + + + KQ + PNFVHS DGSH+ T V
Sbjct: 777 LQPTINTNKDSEIDAHKQESGIAPNFVHSQDGSHLRKTVV 816
>gi|326633044|ref|YP_004306655.1| predicted DNA-directed RNA polymerase [Salmonella phage Vi06]
gi|301170517|emb|CBV65202.1| predicted DNA-directed RNA polymerase [Salmonella phage Vi06]
Length = 883
Score = 226 bits (577), Expect = 3e-56, Method: Compositional matrix adjust.
Identities = 195/710 (27%), Positives = 319/710 (44%), Gaps = 97/710 (13%)
Query: 276 EDRCVQVVQAAVHIGMAIEQEIRIHSFLEKTKNYKRKKIIADTEEVLSKE-KELLRKRVN 334
++ VQ V +A IG AIE E R + ++ + K + EE L+K + +K
Sbjct: 130 DNTTVQAVASA--IGRAIEDEAR----FGRIRDLEAKHFKKNVEEQLNKRVGHVYKKAFM 183
Query: 335 SLIKSKRVMEAQKLLKNEETKPWGRDTQAKLGSRLVELLIETAYVQHPVNPADYSPPDVR 394
+I++ M ++ LL E W ++ +G R +E+LIE+ +
Sbjct: 184 QVIEAD--MLSKGLLGGESWSSWHKEDSIHVGVRCIEMLIESTGM--------------- 226
Query: 395 PAFRHRFKTILKHPGQKTTKRYGVVECDPLVLEGLDRSAKHM--LIP-YVPMLVPPKKWK 451
HR + +T +E P E + A + + P + P +VPPK W
Sbjct: 227 -VSLHRQNAGVVGQDSET------IELAPEYAEAIATRAGALAGISPMFQPCVVPPKPWT 279
Query: 452 GYNKGGYLF---LPSYVMRTHGSRKQQEALKSVTGNCMKKVFEALDTLGSTKWRVNKQVL 508
+ GGY P ++RTH ++AL M +V++A++ +T WR+NK+VL
Sbjct: 280 SISGGGYWANGRRPLALVRTH----SKKALMRYADVYMPEVYKAVNIAQNTAWRINKKVL 335
Query: 509 SVLESI--WVSGG-NIAGLVDRNDVLIPEKPLSEDMTEVQKWKWSVRKAKKINQERHSQR 565
+V + W + ++R ++ + + + + + WK + + ++ R S+R
Sbjct: 336 AVANVVTKWKHCPVDYIPTIEREELPMKPEDIDTNPEALASWKRAAAAVYRKDKARKSRR 395
Query: 566 CDTELKLSVARRMKDEEGFYYPHNLDFRGRAYPMHPHLNHLSSDVCRGVLEFAEGRPLGK 625
E L A + + ++P+N+D+RGR Y + N +D+ +G+L A+G+P+GK
Sbjct: 396 MSLEFMLEQANKFANHRAIWFPYNMDWRGRVYAVS-MFNPQGNDMTKGLLTLAKGKPIGK 454
Query: 626 SGLRWLKIHLANLFSGGVEKLSHDGRLAFVENHLYEIFDSAENPINGSRWWLTAEDPFQC 685
G WLKIH AN GV+K+ R+ F+E++ I A++P+ + WW + PF
Sbjct: 455 EGFYWLKIHGAN--CAGVDKVPFPERIKFIEDNHENILACAKSPLENT-WWSEQDSPFCF 511
Query: 686 LAACINLSEALKSSSPHSVISH---LPIHQDGSCNGLQHYAALGRNTLEAAAVNLVAGEK 742
LA C + H +S+ LP+ DGSC G+QH++ + R+ + AVNL+ E
Sbjct: 512 LAFCFEYA-----GGQHHGLSYNCSLPLAFDGSCFGIQHFSVMLRDEVGGRAVNLLPSET 566
Query: 743 PADVYSEIAVRVHEIMKRDSNKDPSKH-------------------PQALLAKILIDQVD 783
D+Y +A +V+EI++ D + L + L V
Sbjct: 567 VQDIYGIVAKKVNEILQVDMINGTDNEVVTVTDDKTGEIYEKIKLGTKELAGQWLAYGVT 626
Query: 784 RKLVKQTVMTSVYGVTFVGAREQIKRRLEEKGHITDDRQLFA----AACYAAKVTLTALG 839
R + K++VMT YG G R+Q+ + + +F AA Y AK+ A+
Sbjct: 627 RSVTKRSVMTLAYGSKEFGFRQQVLEDTIQPAIDSGKGLMFTHPNQAAGYMAKLIWEAVS 686
Query: 840 EIFEAARSIMGWLGDCAKVIASENQ------------PVRWTTPLGLPVVQPYCK----- 882
AA M WL AK++A E + V WTTP G PV Q Y K
Sbjct: 687 VTVVAAVEAMNWLKSAAKLLAVEVKDRKTGEILRKRCAVHWTTPDGFPVWQEYKKPVQTR 746
Query: 883 -NERHLIRTSLQVLALQREGNLVKIRKQRTAFPPNFVHSLDGSHMMMTAV 931
N L + LQ + + KQ + PNFVHS DGSH+ T V
Sbjct: 747 LNLIFLGQFRLQPTINTNRDSEIDAYKQESGIAPNFVHSQDGSHLRKTVV 796
>gi|448936997|gb|AGE60541.1| RNA polymerase [Pelagibacter phage HTVC011P]
Length = 880
Score = 226 bits (576), Expect = 4e-56, Method: Compositional matrix adjust.
Identities = 164/535 (30%), Positives = 267/535 (49%), Gaps = 44/535 (8%)
Query: 437 LIP-YVPMLVPPKKWKGYNKGGYLFL-------PSYVMRTHGSRKQQ--EALKSVTGNC- 485
L P Y+PM +PP+KW GGY P ++ S K + L+ +
Sbjct: 279 LFPKYMPMKMPPRKWTSPFIGGYYGKKHNFENKPKDIINALQSSKSKYRRYLEELNNKVH 338
Query: 486 -MKKVFEALDTLGSTKWRVNKQVLSVLESIWVSGGNIAGL-VDRNDVLIPEKP--LSEDM 541
M V+E+++T+ T+W +NK + ++++ + N+ L V+ + +P KP + +
Sbjct: 339 EMPVVYESINTIQETEWVINKPIFDLIKTCMENDFNLGQLPVNPQSMELPPKPFDIKTNK 398
Query: 542 TEVQKWKWSVRKAKKINQERHSQRCDTELKLSVARRMKDEEGFYYPHNLDFRGRAYPMHP 601
+ KWK + K + S+ L + A +++ GF+YP+ DFR R YP
Sbjct: 399 EALIKWKREAQHVHKSIGQAMSKFIQVRLVMEEATVLQNIGGFFYPYQFDFRFRIYPKPA 458
Query: 602 HLNHLSSDVCRGVLEFAEGRPLGKS-GLRWLKIHLANLFSGGVEKLSHDGRLAFVENHLY 660
L+ S+D R +L+F G+P+G + I ANL+ G V+K R +V+++
Sbjct: 459 LLSPQSADYSRALLKFKFGKPMGNNDSYSVFAIAGANLY-GEVDKEELPIREQWVKDNTD 517
Query: 661 EIFDSAENPINGSRWWLTAEDPFQCLAACINLSEALKSSSPHSVISHLPIHQDGSCNGLQ 720
I +A NP+ + WW +A+ P+ LA I E + S I+ LPI D S +GLQ
Sbjct: 518 RIIATATNPLEDT-WWASADKPYCFLAWAIEFKEFVASGYSPDFITTLPIQADCSNSGLQ 576
Query: 721 HYAALGRNTLEAAAVNLVAGEKPADVYSEIAVRVHEIMK-RDSNKDPSKHPQALLAKILI 779
HY+A+ R+ + A NLV KP+DVY+ +A ++ IMK RD +P LAK I
Sbjct: 577 HYSAMMRDEIGGKATNLVPSNKPSDVYNLVAQKL--IMKLRDMKDEP-------LAKKWI 627
Query: 780 DQ-VDRKLVKQTVMTSVYGVTFVGAR----EQIKRRLEEKGHITD-------DRQLFAAA 827
D +DRKL K+ VM Y +T R E +K++L EKG + + +F A
Sbjct: 628 DYGIDRKLCKKPVMCLPYSLTKFSCRKYIEEHMKKQLNEKGVSAETFRVSEKEDGIFKAT 687
Query: 828 CYAAKVTLTALGEIFEAARSIMGWLGDCAKVIASENQPVRWTTPLGLPVVQPYCKNERHL 887
+ + ++ EI A+ IM +L D AK++ASEN PV WT+PL P+ + E
Sbjct: 688 NWLTPILWESINEIIVGAKEIMKYLKDIAKLVASENLPVTWTSPLNAPIQMLCYEKESKR 747
Query: 888 IRT----SLQVLALQREGNLVKIRKQRTAFPPNFVHSLDGSHMMMTAVACRDAGL 938
++T S+ L++ + N + R PNF+H+ DG+ + + V + G+
Sbjct: 748 VKTQMGDSIVKLSIAHDTNRISRRATSLGVCPNFIHANDGAVLQLAVVKAKKLGV 802
>gi|354544408|emb|CCE41131.1| hypothetical protein CPAR2_301200 [Candida parapsilosis]
Length = 1239
Score = 226 bits (576), Expect = 4e-56, Method: Compositional matrix adjust.
Identities = 194/690 (28%), Positives = 298/690 (43%), Gaps = 131/690 (18%)
Query: 320 EVLSKEKELLRKRVNSLIKSKRVMEAQKLLKNEETKPWGRDTQAKLGSRLVELLIETAYV 379
E+ S + ++ V+ + KS + K + +++ KL S LV+ +IE+ +
Sbjct: 394 EIFSSMRTTFKRDVSLMKKSDHKSQLFKFISDDDFD--------KLSSILVKSVIESCMI 445
Query: 380 QHPVNPADYSPPDVRPAFRHR-----FKTILKHPGQKTTKRYGVVECDPLVLEGLDRSAK 434
VN DV F + TI P + T V+ +P++ + +
Sbjct: 446 SR-VNAEGSDADDVASGFTNEDFAFHLDTIYVSPVKSET----VINFNPVLKQKVTSIPV 500
Query: 435 HMLIPYVPMLVPPKKWKGYNKGGYL-----FLPSYVMRTHGSRKQQEALKSVTGNCMKKV 489
+ P+L PP+ W G NKG Y+ FL + H + + L +
Sbjct: 501 GSNSHHFPLLCPPEPWLGVNKGAYMERNTPFLSGFDQLQHRILQNAQHLGK-----LDSA 555
Query: 490 FEALDTLGSTKWRVNKQVLSVLESIWVSGGNIAGLVDRNDVLIPEKPLSEDMTEVQKWKW 549
F+ LD +G T W +N VLSV + G +D IP K E
Sbjct: 556 FKCLDQMGQTAWAINPDVLSVFNQVMELPN---GFLD-----IPPKHCDEST-------- 599
Query: 550 SVRKAKKINQERHSQRCDTELKLSVARRM-KDEEGFYYPHNLDFRGRAYPMHPHLNHLSS 608
K+K+ + R + E +A ++ + Y+ + DFRGR YP+ P L H
Sbjct: 600 ---KSKQEIIDIKGLRSNFETVNMLANTFDRNGDMLYHCYVFDFRGRVYPLSP-LTHYGG 655
Query: 609 DVCRGVLEFAEGRPLGKSGLRWLKIHLANLFSG--GVEKLSHDGRLAFVENHLYEIFDSA 666
D+ R + +F G+PLG +G W+K L ++F EK F ++ +I SA
Sbjct: 656 DLTRSLFQFWYGQPLGVNGFYWVKYQLMSVFGNETDCEK--------FYNHNKEQILASA 707
Query: 667 ENPINGSRWWLTAEDPFQCLAACINLSEALK-----SSSPHSVISHLPIHQDGSCNGLQH 721
+P++ + WW+ A++PF L+ CI + + L+ S I LPIHQDGSCNGLQH
Sbjct: 708 SDPLH-NHWWMKADEPFSALSVCIEIQKILQFVQHGKGSIEEYICRLPIHQDGSCNGLQH 766
Query: 722 YAALGRNTLEAAAVNLVAGEKPADVYSEIAVRVHEIMKRDSNK---DPSKHPQALLAKIL 778
YAAL + AVNLV + DVYS + V + + D + A + KIL
Sbjct: 767 YAALAADESGGKAVNLVPMDTKQDVYSTVKDIVEQKIIADVENRLMGEDRDHAAFMLKIL 826
Query: 779 IDQVDRKLVKQTVMTSVYGVTFVGAREQI----------------KRRLEEKGHITDDRQ 822
DRKL+K+ VMT+VYGVT GA QI KR L ++ I RQ
Sbjct: 827 ----DRKLIKRPVMTTVYGVTLAGASRQILENIEDVVSDYDENPTKRGLYDEVTIDRLRQ 882
Query: 823 L-FAAACYAAKVTLTALGEIFEAARSIMGWL-GDCAKVIASEN----------------- 863
+ Y A+ L+++ E+F A+ + WL + +++ S N
Sbjct: 883 FNLRSTMYLARKILSSIDELFFNAKQMEKWLVENTRRILTSYNVKTLDYLQSRTFTSASL 942
Query: 864 -------------------QPVRWTTPLGLPVVQPYCKNER-HLIRTSLQVLALQREGNL 903
P+ W + G PV+Q Y K ++ H + +L + +Q N
Sbjct: 943 TSSLASKALNNWYKTPISYSPISWISASGFPVIQTYRKRQQPHSVTGALGSI-MQSASNK 1001
Query: 904 ---VKIRKQRTAFPPNFVHSLDGSHMMMTA 930
+ RK A PNF+HSLD SHM MT
Sbjct: 1002 TAPMDRRKHELAIAPNFIHSLDASHMFMTC 1031
>gi|195546732|ref|YP_002117810.1| putative DNA-dependent RNA polymerase [Pseudomonas phage PT2]
gi|165880741|gb|ABY70996.1| putative DNA-dependent RNA polymerase [Pseudomonas phage PT2]
Length = 815
Score = 226 bits (576), Expect = 5e-56, Method: Compositional matrix adjust.
Identities = 163/522 (31%), Positives = 247/522 (47%), Gaps = 34/522 (6%)
Query: 443 MLVPPKKWKGYNKGGYLFLPS-----YVMRT--HGSRKQQEALKSVTGNCMKKVFEALDT 495
ML PP+ W + GGY + V RT R +Q L+ + + M +V+EA++
Sbjct: 233 MLAPPRPWNDWCDGGYYSAKAQKHHVLVRRTKHQTKRARQMQLRHLGRDKMPRVYEAVNA 292
Query: 496 LGSTKWRVNKQVLSVLESIWVSGGNIAGLVDRNDVLIPEKPLSED----------MTEVQ 545
L S + +N V ++E ++ SGG + G+ R PE PL ++ +
Sbjct: 293 LQSVAYEINHDVYEIIERVFTSGGGVLGIPQRTYPDKPEFPLGDEWAKENASEQELEAFN 352
Query: 546 KWKWSVRKAKKINQERHSQRCDTELKLSVARRMKDEEGFYYPHNLDFRGRAYPMHPHLNH 605
+WK SV + +E H+ + L R + Y+P ++D RGR Y N
Sbjct: 353 RWKRSVHRWYTGERE-HTAKLREFAALYRVVREHHGKAVYFPMHVDSRGRMYYWGTP-NP 410
Query: 606 LSSDVCRGVLEFAEGRPLGKSGLRWLKIHLANLFSGGVEKLSHDGRLAFVENHLYEIFDS 665
SD+ + L F E R LGK GL WLK+H+AN S G +K+ D R A+V+ ++ F
Sbjct: 411 QGSDIAKACLRFHEKRALGKRGLYWLKVHVAN--SLGCDKVYFDDRAAWVDER-WDDFQR 467
Query: 666 A--ENPINGSRWWLTAEDPFQCLAACINLSEALKSSSPHSVISHLPIHQDGSCNGLQHYA 723
A E P N + E P +A + L A S P S +H D +C+GLQHY+
Sbjct: 468 ALDEGPENYPGLFPEDESPLCAIAGLLELRAAYASGQPERYQSGFIVHMDATCSGLQHYS 527
Query: 724 ALGRNTLEAAAVNLV-AGEKPADVYSEIAVRVHEIMKRDSNKDPSKHPQALLAKILIDQ- 781
A+ R+ + A VNL+ G AD+YS + V + RD +A +L D+
Sbjct: 528 AILRDEVGGAYVNLLPPGLTKADIYSRVLALVAGSLARDRE---GAEGEARGYAVLWDKA 584
Query: 782 -VDRKLVKQTVMTSVYGVTFVGAREQIKRRLEEKG-HITDDRQLFAAACYAAKVTLTALG 839
+ R L K+ MT VYG TF G + L+E G I + + Y A + L A+
Sbjct: 585 GLSRSLTKKPCMTLVYGTTFKGVVDHCLDYLDEAGLEIPEGIPSYRLGSYMATLILDAIR 644
Query: 840 EIFEAARSIMGWLGDCAKVIASENQPVRWTTPLGLPVVQPYCKNERHLIRT---SLQVLA 896
E +A M WL AK + ++ + WTTPLG+ V Q Y K E +R +++ +
Sbjct: 645 ETVPSAVFAMEWLQRLAKALPDASKDLHWTTPLGMQVFQSYPKTEEVRVRLRAEAVEYVT 704
Query: 897 LQREGNLVKIRKQRTAFPPNFVHSLDGSHMMMTAVACRDAGL 938
L + + + PNFVH LD SH+ +TA+AC G+
Sbjct: 705 LYEAKDELDPVRNANGIAPNFVHGLDSSHLGLTALACAAEGI 746
>gi|212671387|ref|YP_002308386.1| RNA polymerase [Kluyvera phage Kvp1]
gi|211997231|gb|ACJ14548.1| RNA polymerase [Kluyvera phage Kvp1]
Length = 882
Score = 225 bits (573), Expect = 1e-55, Method: Compositional matrix adjust.
Identities = 204/705 (28%), Positives = 327/705 (46%), Gaps = 106/705 (15%)
Query: 286 AVHIGMAIEQEIRIHSFL-EKTKNYKRKKIIADTEEVLSKEKELLRKRVNSLIKSKRVME 344
A IG +IE E+R E+ K++K +E L+K ++ K+ ++++
Sbjct: 138 ATKIGRSIEDELRFGRIRDEEAKHFKNH-----VQEALNKRVGIVYKKAFMQAVEGKMLD 192
Query: 345 AQKLLKNEETKPWGRDTQAKLGSRLVELLI-ETAYVQHPVNPADYSPPDVRPAFRHRFKT 403
A +L T W + +G R++ELLI T V+
Sbjct: 193 AGQLQTKWTT--WTPEESIHVGVRMLELLIGSTGLVE----------------------- 227
Query: 404 ILKHPGQKTTKRYG-VVECDPLVLEGLDRSAKHM--LIP-YVPMLVPPKKWKGYNKGGYL 459
L P ++ G ++ ++ L + A + + P Y P +VPPK W GGY
Sbjct: 228 -LHRPFAGNVEKDGEYIQLTEQYVDLLSKRAGALAAIAPMYQPCVVPPKPWTSPVGGGYW 286
Query: 460 FL---PSYVMRTHGSRKQQEALKSVTGNCMKKVFEALDTLGSTKWRVNKQVLSVLESI-- 514
P ++RT GS+K E V M +V++A++ +T W++NK+VL+V+ I
Sbjct: 287 AAGRKPLSLVRT-GSKKGLERYNDV---YMPEVYKAVNIAQNTPWKINKKVLAVVNEIVN 342
Query: 515 W--VSGGNIAGLVDRNDVLIPEKPLSEDMTEVQKWKWSVRKAKKINQE--RHSQRCDTEL 570
W ++ L +R + +P KP D E W + +E R S+R E
Sbjct: 343 WKHCPVEDVPAL-ERGE--LPVKPEDIDTNEAALKAWKKAASAIYRKEKARVSRRMSMEF 399
Query: 571 KLSVARRMKDEEGFYYPHNLDFRGRAYPMHPHLNHLSSDVCRGVLEFAEGRPLGKSGLRW 630
L A + + ++P N+D+RGR Y + P N +D+ +G+L A+G+P+G G W
Sbjct: 400 MLGQANKFAQFKAIWFPMNMDWRGRVYAV-PMFNPQGNDMTKGLLTLAKGKPIGVDGYYW 458
Query: 631 LKIHLANLFSGGVEKLSHDGRLAFVENHLYEIFDSAENPINGSRWWLTAEDPFQCLAACI 690
LKIH AN + GV+K+ R+ F++++ I A +PI + WW + PF LA C
Sbjct: 459 LKIHGAN--TAGVDKVDFAERIKFIDDNHENIMSVAADPI-ANTWWAEQDSPFCFLAFCF 515
Query: 691 NLSEALKSSSPHSVISHLPIHQDGSCNGLQHYAALGRNTLEAAAVNLVAGEKPADVYSEI 750
+ ++ LP+ DGSC+G+QH++A+ R+ + AVNL+ ++ D+Y +
Sbjct: 516 EYAGVQHHGMNYNC--SLPLAFDGSCSGIQHFSAMLRDEVGGRAVNLLPSKEVQDIYRIV 573
Query: 751 AVRVHEIMKRD------------SNKDPSK-------HPQALLAKILIDQVDRKLVKQTV 791
A RV+E+++ +NKD + + L + L V RK+ K++V
Sbjct: 574 AERVNEMLREAVINGTDNEVETVTNKDTGEITEKLKLGTKELAGQWLAYGVTRKVTKRSV 633
Query: 792 MTSVYGVTFVGAREQIKRRLEE--KGHITDDRQLF-----AAACYAAKVTLTALGEIFEA 844
MT YG G R+Q+ LE+ + I D + L AA Y AK+ ++ A
Sbjct: 634 MTLAYGSKEYGFRDQV---LEDTIQPAIDDGKGLMFTQPNQAAGYMAKLIWESVTVTVVA 690
Query: 845 ARSIMGWLGDCAKVIASENQ------------PVRWTTPLGLPVVQPYCK------NERH 886
A M WL AK++A+E + V W TP G PV Q Y K N
Sbjct: 691 AVEAMNWLKSAAKLLAAEVKDKKTKEVLRKRCAVHWVTPDGFPVWQEYKKPVQTRLNLMF 750
Query: 887 LIRTSLQVLALQREGNLVKIRKQRTAFPPNFVHSLDGSHMMMTAV 931
L + LQ + + + RKQ + PNFVHS+DGSH+ MT V
Sbjct: 751 LGQIRLQPTVNTNKDSGIDARKQESGIAPNFVHSMDGSHLRMTVV 795
>gi|224102445|ref|XP_002334173.1| predicted protein [Populus trichocarpa]
gi|222869927|gb|EEF07058.1| predicted protein [Populus trichocarpa]
Length = 160
Score = 224 bits (572), Expect = 1e-55, Method: Compositional matrix adjust.
Identities = 104/161 (64%), Positives = 139/161 (86%), Gaps = 5/161 (3%)
Query: 140 RRIFVQDPPWFSSIFLKGLYK----RIKLQEYREMKKRKFNLLRRRQVKQETEAWERMVD 195
+R+F++D PW S+++ KG +K ++KL E ++++KRK+NLLRRRQ+++ETEAWERM +
Sbjct: 1 KRVFIRDSPWISALYWKGTHKIANKKVKL-ELKDIEKRKYNLLRRRQIREETEAWERMAE 59
Query: 196 EYKELEAKMIEKRLAPNLPHIKGLFLGWFGPLSEAIEREQKMQRTKKQKAAYAPHIELLP 255
EY L +M E++LAPNLP++K LFLGWF PL EAIEREQK++++KKQK+A++P+IELLP
Sbjct: 60 EYTGLVKEMCERKLAPNLPYVKSLFLGWFEPLKEAIEREQKLEKSKKQKSAFSPNIELLP 119
Query: 256 ADKVAVIVMHKMMGLVMAGHEDRCVQVVQAAVHIGMAIEQE 296
ADK+AVIVMHKMMGLVM GHED CV+VVQAAV IG+AIEQE
Sbjct: 120 ADKMAVIVMHKMMGLVMVGHEDGCVRVVQAAVQIGIAIEQE 160
>gi|313892513|ref|ZP_07826102.1| DNA-directed RNA polymerase [Dialister microaerophilus UPII 345-E]
gi|313119092|gb|EFR42295.1| DNA-directed RNA polymerase [Dialister microaerophilus UPII 345-E]
Length = 861
Score = 224 bits (570), Expect = 2e-55, Method: Compositional matrix adjust.
Identities = 154/527 (29%), Positives = 258/527 (48%), Gaps = 42/527 (7%)
Query: 442 PMLVPPKKWKGYNKGGY----------LFLPSYVMRTHGSRKQQEALKSVTGNCMKKVFE 491
PM+VPP WK +KGGY + + ++ + + K + + +VFE
Sbjct: 251 PMVVPPLPWKNRHKGGYHGELKRFHSFIRTAKFTWKSCKNYYYDKYKKQLDQTNLTRVFE 310
Query: 492 ALDTLGSTKWRVNKQVLSVLESIWVSGGNIAGLVDRNDVLIPEKPLSEDMTEVQKWKWSV 551
++ + +T W++NK V+ +LE + GG +AGL P + ++Q+ K +
Sbjct: 311 VVNHIQATPWKINKDVMHILEKVIDRGGELAGLPRLQPFEHPPMLKNPTQEQLQEHKKKL 370
Query: 552 RKAKKINQERHSQRCDTELKLSVARRMKDEEGFYYPHNLDFRGRAYPMHPHLNHLSSDVC 611
K R + T + A+ + Y+PHN+DFRGR YP+ P + +D+
Sbjct: 371 HTLYKHEASRSGKAIRTFMNFDTAKTYAKYDKIYFPHNIDFRGRIYPI-PTFSPQGNDLN 429
Query: 612 RGVLEFAEGRPLGKS-GLRWLKIHLANLFSGGVEKLSHDGRLAFVENHLYEIFDSAENPI 670
+G+L A+ +PL K L+W I A L G++K+ + + +V++H +I +A++P+
Sbjct: 430 KGLLLLADPQPLKKEEDLKWFFIAGAEL--AGIDKVPFEECIKWVQDHEKQIMATAQDPM 487
Query: 671 NGSRWWLTAEDPFQCLAACINLSEALKSS----SPHSVISHLPIHQDGSCNGLQHYAALG 726
WW + P+Q L C + K +P ++ L I DG+C+GLQH++AL
Sbjct: 488 KNISWWGELDSPWQFLGFCYEYKKYKKYIEEHKTPIGFMTGLVIPFDGTCSGLQHFSALL 547
Query: 727 RNTLEAAAVNLVAGEKPADVYSEIA-VRVHEIMK-------------RDSNKDPSKHPQA 772
R+ + AAAVNL KP D+Y E+A V + E+ K + + K+ K+
Sbjct: 548 RDEVGAAAVNLKPDTKPHDIYQEVADVVIEEVEKEAQTGTQDAYVKNKKTGKEKLKYGTR 607
Query: 773 LLAK-ILIDQVDRKLVKQTVMTSVYGVTFVGAREQIKRRL----EEKGHITDDRQLFAAA 827
LA+ L + RK+ K+ VMT YG G EQ+ + + G T+D FA A
Sbjct: 608 TLAQGWLAYGITRKVTKRNVMTLAYGSKQFGFTEQLLQDIIIPNIGAGIFTEDNS-FAYA 666
Query: 828 CYAAKVTLTALGEIFEAARSIMGWLGDCAKVIASENQPVRWTTPLGLPVVQPYCKNERHL 887
Y +K A+ ++ A M WL D ++++ + + W TP+G P+ QPY + +
Sbjct: 667 QYMSKHVWQAVRKVVVKAVEGMKWLQDISRLVCDNDHVITWVTPMGFPIQQPYMVYDIEV 726
Query: 888 ----IRTSLQVLALQREGNLVKIRKQRTAFPPNFVHSLDGSHMMMTA 930
IR ++ + + RKQ +A PNF+HS+D SH+ MT
Sbjct: 727 YQMRIRNKIKRFYDPKMTGDIDKRKQTSAIAPNFIHSMDASHLQMTV 773
>gi|29366702|ref|NP_813747.1| T3/T7-like RNA polymerase [Pseudomonas phage gh-1]
gi|29243561|gb|AAO73140.1|AF493143_1 putative RNA-polymerase [Pseudomonas phage gh-1]
Length = 885
Score = 223 bits (567), Expect = 5e-55, Method: Compositional matrix adjust.
Identities = 202/720 (28%), Positives = 320/720 (44%), Gaps = 100/720 (13%)
Query: 282 VVQAAVHIGMAIEQEIRIHSFLEKTKNYKRKKIIADTEEVLSKEKELLRKRVNSLIKSKR 341
+ + AV IG A+E+E R + + +K I ++ L++ + K
Sbjct: 134 ITEMAVSIGGALEEEARFGRIRVLEQQHYQKHI----KKALAQRNGMTYKVAYMEKVEAH 189
Query: 342 VMEAQKLLKNEETKPW---GRDTQAKLGSRLVELLIETAYVQHPVNPADYSPPDVRPAFR 398
++EA +L NE W G D + +G R++ELLIE+ +
Sbjct: 190 MIEAGQL--NEPWTEWDQSGADVRYHMGIRMLELLIESTQL------------------- 228
Query: 399 HRFKTILKHPGQKTTKRYGVVECDPLVLEGLDRSAKHMLI------PYVPMLVPPKKWKG 452
+ + +H G K V L E D+ I Y PM+VPPK W G
Sbjct: 229 --IEVVREHKGNKKLDGEYVY----LKAEWADKLQSRAYILSGVFPRYQPMVVPPKPWNG 282
Query: 453 YNKGGYLF---LPSYVMRTHGSRKQQEALKSVTGNCMKKVFEALDTLGSTKWRVNKQVLS 509
GGY P +R R AL M +V++A++ +T W +N++VL+
Sbjct: 283 VRGGGYWAKGRKPVTFIRVPTKR----ALNRYRDVHMPEVYKAVNLAQATPWAINQKVLA 338
Query: 510 VLESIWVSGGN--IAGLVDRNDVLIPEKPLSEDMTE--VQKWKWSVRKAKKINQERHSQR 565
V ++ +S N I +P KP + E ++ WK + + + R S+R
Sbjct: 339 VANAV-MSWENVPIKEFPSTEREALPIKPGDIETNEEALKAWKKAAAGVYRKDAARVSRR 397
Query: 566 CDTELKLSVARRMKDEEGFYYPHNLDFRGRAYPMHPHLNHLSSDVCRGVLEFAEGRPLGK 625
E L A + + + Y+P+NLD+RGR Y + P N S+D+ +G+L+ A+G P+GK
Sbjct: 398 LSYEFSLEQANKFAEYDAIYFPYNLDWRGRVYAI-PAFNPQSNDMTKGILQAAKGEPVGK 456
Query: 626 SGLRWLKIHLANLFSGGVEKLSHDGRLAFVENHLYEIFDSAENPINGSRWWLTAEDPFQC 685
G+ WL IH AN GV+K+ R +++++ I A +P+ + W+ + PF
Sbjct: 457 DGIEWLMIHGAN--CAGVDKVDFSQRKQWIKDNEEMILRCAHDPLINTD-WMDMDSPFCF 513
Query: 686 LAACINLSEALKSSSPHSVISHLPIHQDGSCNGLQHYAALGRNTLEAAAVNLVAGEKPAD 745
LA C H +S LPI DGSC+G+QH++A+ R+ AVNL+ + D
Sbjct: 514 LAFCFEWQGVKLHGEAH--VSALPIAFDGSCSGIQHFSAMLRDERGGRAVNLLQSDDVQD 571
Query: 746 VY----SEIAVRVHEIMKR--------DSNKDPSK-------HPQALLAKILIDQVDRKL 786
+Y E+ + + +K D+N+D + + L L + RK+
Sbjct: 572 IYKLVSDEVEIALQWDLKYGTEDSTVLDTNEDTGEITERRVLGTKTLAMAWLTYGMSRKV 631
Query: 787 VKQTVMTSVYGVTFVGAREQIKRRLEEKGHITDDRQLFA----AACYAAKVTLTALGEIF 842
K++VMT YG G +Q++ + +K D ++F A+ Y A ++ +
Sbjct: 632 TKRSVMTLAYGSKAYGFADQVREDIVKKAIDNGDGEMFTSPGEASRYMAGKIWDSVSVVV 691
Query: 843 EAARSIMGWLGDCAKVIASENQ------------PVRWTTPLGLPVVQPYCKNERHLI-- 888
AA M WL AK++ASE + PV W TP G PV Q Y E I
Sbjct: 692 VAAVEAMNWLQKAAKLLASEVKCKKTKQVLKPAMPVYWVTPDGFPVWQEYMIPETRRIDL 751
Query: 889 ----RTSLQVLALQREGNLVKIRKQRTAFPPNFVHSLDGSHMMMTAV-ACRDAGLHFAGL 943
+Q R+ + + RKQ + PNFVHS DGSH+ T V A G+ F L
Sbjct: 752 MFLGDVRIQATVTVRDSDKIDARKQESGISPNFVHSQDGSHLRKTVVHAAERYGIEFFAL 811
>gi|77118172|ref|YP_338094.1| RNA polymerase [Enterobacteria phage K1F]
gi|72527916|gb|AAZ72968.1| RNA polymerase [Enterobacteria phage K1F]
gi|83308114|emb|CAJ29347.1| gp1 protein [Enterobacteria phage K1F]
Length = 893
Score = 221 bits (563), Expect = 1e-54, Method: Compositional matrix adjust.
Identities = 197/728 (27%), Positives = 325/728 (44%), Gaps = 93/728 (12%)
Query: 254 LPADKVAVIVMHKMMGLVMAGHEDRCVQVVQAAVHIGMAIEQEIRIHSFLEKTKNYKRKK 313
+ + AVI++ ++ ++ + + + A IG +E EIR +K K + KK
Sbjct: 122 ISCESAAVIILKVILSKLV---KPEGIPITPMASAIGRTLEDEIRFGRIRDKEKEH-FKK 177
Query: 314 IIADTEEVLSKEKELLRKRVNSLIKSK--RVMEAQKLLKNEETKPWG--RDTQA-KLGSR 368
IAD L KR + K + +EA L + + WG T+A +G +
Sbjct: 178 AIADN----------LNKRAGASYKKAYMQAVEASMLEQGQLEDAWGTWSPTEAVHVGIK 227
Query: 369 LVELLIE-TAYVQHPVNPADYSPPDVRPAFRHRFKTILKHPGQKTTKRYGVVECDPLVLE 427
++E++I+ T V+ A + DV H +K Q+ G+
Sbjct: 228 MLEIVIQSTQLVELKRYGAGNAAADVE--MVHLSDFWVKKMAQRGFSLAGIAPV------ 279
Query: 428 GLDRSAKHMLIPYVPMLVPPKKWKGYNKGGYLF---LPSYVMRTHGSRKQQEALKSVTGN 484
Y P +VPPK W G GGY P ++R GS+ + V
Sbjct: 280 ------------YQPCVVPPKPWTGVVGGGYWAKGRRPLPLIRL-GSKSAVARYEDV--- 323
Query: 485 CMKKVFEALDTLGSTKWRVNKQVLSVLESIWVSGGNIAGLVDRNDVLIPEKPLSEDMTEV 544
M +V+EA++ + +T W+VNK+VL V+ + + + + L PE E E+
Sbjct: 324 YMPEVYEAVNIIQNTPWKVNKKVLDVVNMVEKLNNTPIDDIPQMEPLKPEAYAGETEEEL 383
Query: 545 QKWKWSVRKAKKINQERHSQRCDTELKLSVARRMKDEEGFYYPHNLDFRGRAYPMHPHLN 604
+ WK + + + R S+R ++ A + + ++P+N+D+RGR Y + P N
Sbjct: 384 KAWKKAAAGIYRREKARQSRRLSLSFIVNQANKFSQFKAIWFPYNMDWRGRVYAV-PMFN 442
Query: 605 HLSSDVCRGVLEFAEGRPLGKSGLRWLKIHLANLFSGGVEKLSHDGRLAFVENHLYEIFD 664
+D+ +G+L A G+P+G G +WLK+H AN GV+K++ + R+ +VE++ I
Sbjct: 443 PQGNDMQKGLLTLAVGKPIGADGFKWLKVHGAN--CAGVDKVTFEERIKWVEDNHDNIMA 500
Query: 665 SAENPINGSRWWLTAEDPFQCLAACINLSEALKSSSPHSVISHLPIHQDGSCNGLQHYAA 724
+A+ P++ WW + PF LA C + + +S LPI DGSC+G+QH++A
Sbjct: 501 AAKAPMDSIEWWGKLDSPFCFLAFCFEYAGVMHHGLSYSC--SLPIAFDGSCSGIQHFSA 558
Query: 725 LGRNTLEAAAVNLVAGEKPADVYSEIAVRVHEIMK----RDSNKDPSKHPQALLAKI--- 777
+ R+ + AVNL K D+Y ++ R+ E +K ++ + H +I
Sbjct: 559 MLRDHIGGHAVNLTPSGKVQDIYRIVSDRIEEELKVLLVNGTDNEMVTHEDKKTGEITER 618
Query: 778 ------------LIDQVDRKLVKQTVMTSVYGVTFVGAREQIKRRLEEKGHITDDRQLFA 825
L + RK+ K++VMT YG G +Q+ + + +F
Sbjct: 619 LKLGTRELARQWLTYGMSRKVTKRSVMTLAYGSKEYGFADQVYEDIVMPAIDSGSGAMFT 678
Query: 826 ----AACYAAKVTLTALGEIFEAARSIMGWLGDCAKVIASENQ------------PVRWT 869
A+ + AK+ A+ AA M WL AK++A+E + PV W
Sbjct: 679 EPSQASRFMAKMIWEAVSVTVVAAVDAMKWLQGAAKLLAAEVKDKKTGEILKPCLPVHWV 738
Query: 870 TPLGLPVVQPYCK------NERHLIRTSLQVLALQREGNLVKIRKQRTAFPPNFVHSLDG 923
TP G PV Q Y K N L +LQ + + KQ + PNFVHS DG
Sbjct: 739 TPDGFPVWQEYRKKDTTRLNLMFLGSFNLQPTVNKGTKKELDKHKQESGISPNFVHSQDG 798
Query: 924 SHMMMTAV 931
SH+ T V
Sbjct: 799 SHLRKTVV 806
>gi|328786720|ref|XP_001121402.2| PREDICTED: DNA-directed RNA polymerase, mitochondrial-like [Apis
mellifera]
Length = 664
Score = 219 bits (558), Expect = 6e-54, Method: Compositional matrix adjust.
Identities = 129/392 (32%), Positives = 211/392 (53%), Gaps = 40/392 (10%)
Query: 357 WGRDTQAKLGSRLVELLIETAYVQHPVNPADYSPPDVR---PAFRHRFKT--------IL 405
W D +G L ++++ +Q P D++ PAF F+ I
Sbjct: 294 WPMDVITNIGKFLYKIILNDIMLQ----PEMLKGQDIKHSIPAFYTLFRNKGNYLSEQIK 349
Query: 406 KHPGQKTTKRYGVVECDPLVLEGLDRSAKHMLIPYVPMLVPPKKWKGYNKGGYLFLPSYV 465
HP +K Y + + L + + +P PP W + GGYL +
Sbjct: 350 PHPF--LSKLYKKLHMETLTFD----------VRLLPSYSPPLPWTSIHSGGYLITKTNF 397
Query: 466 MRTHGSRKQQEALKSVTGNCMKKVFEALDTLGSTKWRVNKQVLSVLESIWVSGGNIAGLV 525
+R+ + +++ + VF++L+ + S W++N +L ++ I+ GG++ V
Sbjct: 398 IRS----PIEHQFQNIKSKQLFPVFDSLNQISSIPWKINTAILDIVIKIFQDGGSVELNV 453
Query: 526 DRN-DVLIPEKPLSEDMT--EVQKWKWSVRKAKKINQERHSQRCDTELKLSVARRMKDEE 582
++ VL P L+++ T E Q+ ++ + K+ ++ ++ CDT KLS+A +++
Sbjct: 454 PQSVSVLSPPCSLNKNATIEEKQQIAIAIAQYKQKKKDMYALWCDTLYKLSIANHFRNK- 512
Query: 583 GFYYPHNLDFRGRAYPMHPHLNHLSSDVCRGVLEFAEGRPLGKSGLRWLKIHLANL--FS 640
F+ P+NLDFRGR YP+ P+LNHLSSD+ R +L FA+G+PLG +G+ WLK+H+ NL F
Sbjct: 513 IFWLPYNLDFRGRVYPIPPYLNHLSSDLGRSLLLFAKGKPLGPNGINWLKLHVINLTNFK 572
Query: 641 GGVEKLSHDGRLAFVENHLYEIFDSAENPINGSRWWLTAEDPFQCLAACINLSEALKSSS 700
G S RL + + ++ I DSA P+ G WW +E+P+Q LA CI ++ ALKS +
Sbjct: 573 KGS---SLKERLEYADQNMDNIIDSATKPLTGKMWWKQSEEPWQTLAGCIEIANALKSPN 629
Query: 701 PHSVISHLPIHQDGSCNGLQHYAALGRNTLEA 732
I+ P+HQDGSCNGLQHYAALG++ + A
Sbjct: 630 IEKYITSFPVHQDGSCNGLQHYAALGKDQIGA 661
>gi|194100311|ref|YP_002003741.1| gp1 [Enterobacteria phage EcoDS1]
gi|193201306|gb|ACF15785.1| gp1 [Enterobacteria phage EcoDS1]
Length = 893
Score = 218 bits (554), Expect = 2e-53, Method: Compositional matrix adjust.
Identities = 191/702 (27%), Positives = 312/702 (44%), Gaps = 90/702 (12%)
Query: 280 VQVVQAAVHIGMAIEQEIRIHSFLEKTKNYKRKKIIADTEEVLSKEKELLRKRVNSLIKS 339
+ + A IG +E EIR +K K + KK IAD L KR + K
Sbjct: 145 IPITPMASAIGRTLEDEIRFGRIRDKEKEH-FKKAIADN----------LNKRAGASYKK 193
Query: 340 K--RVMEAQKLLKNEETKPWG--RDTQA-KLGSRLVELLIE-TAYVQHPVNPADYSPPDV 393
+ +E L + + WG T+A +G +++E++I+ T V+ A + DV
Sbjct: 194 AYMQAVETSMLEQGQLEDAWGTWSPTEAVHVGIKMLEIVIQSTQLVELKRYGAGNAAADV 253
Query: 394 RPAFRHRFKTILKHPGQKTTKRYGVVECDPLVLEGLDRSAKHMLIPYVPMLVPPKKWKGY 453
H +K Q+ G+ Y P +VPPK W G
Sbjct: 254 E--MVHLSDFWVKKMAQRGFSLAGIAPV------------------YQPCVVPPKPWTGV 293
Query: 454 NKGGYLF---LPSYVMRTHGSRKQQEALKSVTGNCMKKVFEALDTLGSTKWRVNKQVLSV 510
GGY P ++R GS+ + V M +V++A++ + +T W+VNK+VL V
Sbjct: 294 VGGGYWAKGRRPLPLIRL-GSKSAVARYEDV---YMPEVYDAVNIIQNTPWKVNKKVLEV 349
Query: 511 LESIWVSGGNIAGLVDRNDVLIPEKPLSEDMTEVQKWKWSVRKAKKINQERHSQRCDTEL 570
+ + + + + L PE E E++ WK + + + R S+R
Sbjct: 350 VNMVEKLNNTPIDDIPQMEPLKPEDYAGETEEELKAWKKAAAGIYRREKARQSRRLSLSF 409
Query: 571 KLSVARRMKDEEGFYYPHNLDFRGRAYPMHPHLNHLSSDVCRGVLEFAEGRPLGKSGLRW 630
++ A + + ++P+N+D+RGR Y + P N +D+ +G+L A G+P+G G +W
Sbjct: 410 IVNQANKFSQFKAIWFPYNMDWRGRVYAV-PMFNPQGNDMQKGLLTLAVGKPIGADGFKW 468
Query: 631 LKIHLANLFSGGVEKLSHDGRLAFVENHLYEIFDSAENPINGSRWWLTAEDPFQCLAACI 690
LK+H AN G++K++ + R+ +VE++ I +A+ P++ WW + PF LA C
Sbjct: 469 LKVHGAN--CAGIDKVTFEERIKWVEDNHDNIMATAKAPMDSIEWWGKLDSPFCFLAFCF 526
Query: 691 NLSEALKSSSPHSVISHLPIHQDGSCNGLQHYAALGRNTLEAAAVNLVAGEKPADVYSEI 750
+ + +S LPI DGSC+G+QH++A+ R+ + AVNL K D+Y +
Sbjct: 527 EYAGVMHHGLSYSC--SLPIAFDGSCSGIQHFSAMLRDHIGGHAVNLTPSGKVQDIYRIV 584
Query: 751 AVRVHEIMK----RDSNKDPSKHPQALLAKI---------------LIDQVDRKLVKQTV 791
+ R+ E +K ++ + H +I L + RK+ K++V
Sbjct: 585 SDRIEEELKVLLVNGTDNEMVTHEDKKTGEITERLKLGTRELARQWLTYGMSRKVTKRSV 644
Query: 792 MTSVYGVTFVGAREQIKRRLEEKGHITDDRQLFA----AACYAAKVTLTALGEIFEAARS 847
MT YG G +Q+ + + +F A+ + AK+ A+ AA
Sbjct: 645 MTLAYGSKEYGFADQVYEDIVMPAIDSGSGAMFTEPSQASRFMAKMIWEAVSVTVVAAVD 704
Query: 848 IMGWLGDCAKVIASENQ------------PVRWTTPLGLPVVQPYCK------NERHLIR 889
M WL AK++A+E + PV W TP G PV Q Y K N L
Sbjct: 705 AMKWLQGAAKLLAAEVKDKKTGEILKPCLPVHWVTPDGFPVWQEYRKKDTTRLNLMFLGS 764
Query: 890 TSLQVLALQREGNLVKIRKQRTAFPPNFVHSLDGSHMMMTAV 931
+LQ + + KQ + PNFVHS DGSH+ T V
Sbjct: 765 FNLQPTVNKGTKKELDKHKQESGISPNFVHSQDGSHLRKTVV 806
>gi|167841470|ref|ZP_02468154.1| DNA-directed RNA polymerase [Burkholderia thailandensis MSMB43]
gi|424904041|ref|ZP_18327551.1| DNA-directed RNA polymerase [Burkholderia thailandensis MSMB43]
gi|390930019|gb|EIP87421.1| DNA-directed RNA polymerase [Burkholderia thailandensis MSMB43]
Length = 818
Score = 217 bits (553), Expect = 2e-53, Method: Compositional matrix adjust.
Identities = 201/757 (26%), Positives = 343/757 (45%), Gaps = 79/757 (10%)
Query: 214 PHIKGLFLGWFGPLSEAIEREQKMQRTKKQKAAYAPHIELLPADKVAVIVMHKMMGLVMA 273
P+ ++ W PL++ IE E + ++AA+ ++ L VA I + ++ VM
Sbjct: 39 PYAAAVYRRWLLPLADVIEAEVQSTGKAGRRAAHVALLKPLDPRAVAHIAVRSVLVSVMQ 98
Query: 274 GHEDRCVQVVQAAVHIGMAIEQEIRIHSFLEKTKNYKRKKIIADTEEVLSKEKELLRKRV 333
D V A +G + E+ + +F + K + A +L RV
Sbjct: 99 ADND----VRTTARLLGRHVYGELVLSTF----AHGKPEIYWALMRNLLENRSTAAAHRV 150
Query: 334 NSLIKSKRVMEAQKLLKNEETKPWGRDTQAKLGSRLVELLIETAYVQHPVNPADYSPPDV 393
N + + E E W + ++ L+E L V DV
Sbjct: 151 NVIRNAANSHEV-------ELPQWLPSDREQVALWLIEQLRLLGMV------------DV 191
Query: 394 RPAFRHRFKTILKHPGQKTTKRYGVVECDPL--VLEGLDRSAKHMLIPYVPMLVPPKKWK 451
KT+ K GQ+ + ++ V+ + + +H + +P + PK W
Sbjct: 192 T-------KTLRKGLGQRLSTEMDIMLTAQAQDVVSSIRGTVEHTMPYSLPFIEQPKDWI 244
Query: 452 GYNKGGYLF------LPSYVMRTHGSRKQQEALKSVTGNCMKKVFEALDTLGSTKWRVNK 505
GGY PSYV T +R+ +A++ + M V A++ L + KWRVN+
Sbjct: 245 SMFDGGYHTGMMRRQTPSYVNLTK-NRRTLDAMRDLD---MPDVRSAINHLQAVKWRVNQ 300
Query: 506 QVLSVLESIWVSGGNIAGLVDRNDVLIPEKP--LSEDM----------TEVQKWKWSVRK 553
+VL ++ G ++ ++ + + P +P L++DM E WK + +
Sbjct: 301 RVLDAVKDCARHGIDMDEIISQAEQPKPPRPEWLTDDMRKEDMTGDELVEFSGWKRRMAE 360
Query: 554 AKKINQERHSQRCDTELKLSVARRMKDEEGFYYPHNLDFRGRAYPMHPHLNHLSSDVCRG 613
+ R ++ + +A + K+ Y+ + DFRGR Y ++ SD+ +
Sbjct: 361 WHTDRKLRGTRWGRFYMATRMADKFKEYPAIYFLYQADFRGRLYAQTTGISPQGSDLQKS 420
Query: 614 VLEFAEGRPLGK-SGLRWLKIHLANLFSGGVEKLSHDGRLAFVENHLYEIFDSAENPING 672
+L+FAEG+ L +RW KI AN F GV+K+ + R+A+V I A +P++
Sbjct: 421 LLQFAEGKRLDTPEAVRWFKIAGANRF--GVDKVPFEDRIAWVNQREQFILQFAADPVS- 477
Query: 673 SRWWLTAEDPFQCLAACINLSEALKSSSPHSVISHLPIHQDGSCNGLQHYAALGRNTLEA 732
R W A+ P Q LA C ++ +S P + S + + DGSCNGLQH++A+ R+++
Sbjct: 478 HREWQDADSPLQFLAWCFEYADWRQS--PDTFESRIAVGLDGSCNGLQHFSAMLRDSVGG 535
Query: 733 AAVNLVAGEKPADVYSEIAVRVHEIMKRDSNKDPSKHPQ--ALLAKILIDQVDRKLVKQT 790
AVNLV G++P D+Y ++A V +K P +H + K ++R +VK++
Sbjct: 536 RAVNLVPGDRPNDIYQQVADVV--ALKLADPNLPLRHERDSVFKGKWKAHGMNRSIVKRS 593
Query: 791 VMTSVYGVTFVGAREQIKRRLEEKGHIT--DDRQLFAAACYAAKVTLTALGEIFEAARSI 848
VMT YG T E I +KG T + + AA + + + A+GE+ AA +
Sbjct: 594 VMTLPYGSTRFSCAEFIVEDYLKKGAATEFETTEYRFAAEFLSHLVWDAIGEVVIAASAA 653
Query: 849 MGWLGDCAKVIASE-NQPVRWTTPLGLPVVQPYCKNERHLIRTSLQVLA---LQREGNLV 904
M WL A +I Q + WTTP G V Q Y NE ++R + ++L ++ G++
Sbjct: 654 MAWLQRAAGLILKRGGQQIGWTTPSGFLVEQAY--NEIDIVRVNTKLLGHTVIKVFGSMA 711
Query: 905 ---KIRKQRTAFPPNFVHSLDGSHMMMTAVACRDAGL 938
I K + PNFVHS+D +H+ +T C+ G+
Sbjct: 712 DTPSISKHKNGIAPNFVHSMDAAHLALTVKECKRLGI 748
>gi|89148150|gb|ABD62819.1| mitochondrial single-subunit RNA polymerase [Planoprotostelium sp.
ATCC 50597]
Length = 297
Score = 216 bits (550), Expect = 4e-53, Method: Compositional matrix adjust.
Identities = 114/231 (49%), Positives = 148/231 (64%), Gaps = 9/231 (3%)
Query: 716 CNGLQHYAALGRNTLEAAAVNLVAGEKPADVYSEIAVRVHEIMKRDSNKDPSKHPQALLA 775
CNGLQHYAALG + + A VNLV + P DVYS +A V KR + + H L
Sbjct: 1 CNGLQHYAALGGDEIGAKKVNLVPSDSPQDVYSGVATVV---AKRVHDDALAGHE---LG 54
Query: 776 KILIDQVDRKLVKQTVMTSVYGVTFVGAREQIKRRLEEKG-HITDDRQLFAAACYAAKVT 834
K+L +VDRK+VKQTVMTSVYGVT++GAR QI L +K DD QL+ A+ Y T
Sbjct: 55 KLLDGKVDRKVVKQTVMTSVYGVTYIGARLQIHNALSDKEIDWRDDDQLYHASAYIINHT 114
Query: 835 LTALGEIFEAARSIMGWLGDCAKVIASENQPVRWTTPLGLPVVQPYCKNERHLIRTSLQV 894
AL ++F AR+IM WL DCA++IA PV W TPLGLP+VQPY KN+ ++T +Q
Sbjct: 115 FEALNQMFLGARNIMKWLADCARIIAKNKDPVAWVTPLGLPIVQPYVKNQNFTVKTVVQH 174
Query: 895 LALQ--REGNLVKIRKQRTAFPPNFVHSLDGSHMMMTAVACRDAGLHFAGL 943
+ L R+ V KQR+AFPPN+VHSLD HMM+TA+ C+ + +A +
Sbjct: 175 VLLHDIRKDLPVNTIKQRSAFPPNYVHSLDSCHMMLTAIECKKHNIAYASV 225
>gi|148699723|gb|EDL31670.1| polymerase (RNA) mitochondrial (DNA directed), isoform CRA_e [Mus
musculus]
Length = 935
Score = 215 bits (548), Expect = 8e-53, Method: Compositional matrix adjust.
Identities = 133/376 (35%), Positives = 203/376 (53%), Gaps = 19/376 (5%)
Query: 349 LKNEETKPWGRDTQAKLGSRLVELLIETAYVQHPVNPADYSPPDVRPAFRHRFKTILKHP 408
L+ +PW +LG +L ELL++ VQ P + A R + +
Sbjct: 537 LEAPAQQPWSVPVLLQLGKQLAELLVQA--VQMPRSLA------ARQGAQRSIPVLYHVY 588
Query: 409 GQKTTKRYGVVECDPLVLEGLDRSAKHMLI---PYVPMLVPPKKWKGYNKGGYLFLPSYV 465
++ ++ G+++ P L+ +A+ L VPML PP W + G YL + +
Sbjct: 589 SFRSYRQVGILKPHPAFTHLLETAAEPTLTFETTEVPMLCPPLPWTSLHSGAYLLSSTKL 648
Query: 466 MR-THGSRKQQEALKSVTGNCMKKVFEALDTLGSTKWRVNKQVLSVLESIWVSGGNIAGL 524
MR T G+ + Q L+ + +AL LG+ WRVN +L ++ I+ G +
Sbjct: 649 MRATEGTTQHQRLLEQCPPAQLHGPLDALTQLGNCAWRVNGHLLDLVLQIFRDKGCMPLG 708
Query: 525 VD--RNDVLIPEK-PLSEDMTEVQK--WKWSVRKAKKINQERHSQRCDTELKLSVARRMK 579
V R++ P + L T V K + + + K+ +E HS R + +LS+A+ ++
Sbjct: 709 VPPPRSEAPRPARYQLPPGSTPVHKSELRKELARCLKVAREMHSLRSEALYRLSLAQHLR 768
Query: 580 DEEGFYYPHNLDFRGRAYPMHPHLNHLSSDVCRGVLEFAEGRPLGKSGLRWLKIHLANLF 639
F+ PHN+DFRGR YP PH NHL SD+ R +LEFAEGRPLG GL WLKIHL NL
Sbjct: 769 -HRVFWLPHNMDFRGRTYPCPPHFNHLGSDLARALLEFAEGRPLGPRGLDWLKIHLINL- 826
Query: 640 SGGVEKLSHDGRLAFVENHLYEIFDSAENPINGSRWWLTAEDPFQCLAACINLSEALKSS 699
+G + S RLAF + + EI DSA+NP+ G +WW+ A++P+Q LA C+ ++ A++S
Sbjct: 827 TGLKKGDSLRMRLAFADEVMEEILDSADNPLTGRKWWMEADEPWQTLACCMEVAHAVRSP 886
Query: 700 SPHSVISHLPIHQDGS 715
P + ISHLP+HQ G+
Sbjct: 887 DPAAYISHLPVHQVGT 902
>gi|304274392|gb|ADM18943.1| DNA-dependent RNA polymerase [Sporidiobolus salmonicolor]
gi|304274394|gb|ADM18944.1| DNA-dependent RNA polymerase [Sporidiobolus salmonicolor]
gi|304274400|gb|ADM18947.1| DNA-dependent RNA polymerase [Sporidiobolus salmonicolor]
gi|304274402|gb|ADM18948.1| DNA-dependent RNA polymerase [Sporidiobolus salmonicolor]
Length = 165
Score = 214 bits (545), Expect = 2e-52, Method: Composition-based stats.
Identities = 96/156 (61%), Positives = 118/156 (75%), Gaps = 3/156 (1%)
Query: 571 KLSVARRMKDEEGFYYPHNLDFRGRAYPMHPHLNHLSSDVCRGVLEFAEGRPLGKSGLRW 630
KL +AR DE+ FY+PHNLDFRGRAYP+ P+L+H+ D+CRG+L F E +PLG+ GLRW
Sbjct: 4 KLEIARAFIDEK-FYFPHNLDFRGRAYPIPPNLSHIGDDMCRGLLLFGEAKPLGERGLRW 62
Query: 631 LKIHLANLFSGGVEKLSHDGRLAFVENHLYEIFDSAENPINGSRWWLTAEDPFQCLAACI 690
LKIHL+NL G +K S D R AF HL +IFDSA+ P++G RWWL A+DP+QCLA CI
Sbjct: 63 LKIHLSNL--TGFDKASFDEREAFAMEHLDDIFDSADQPLDGKRWWLKADDPWQCLATCI 120
Query: 691 NLSEALKSSSPHSVISHLPIHQDGSCNGLQHYAALG 726
L+ AL+S P LPIHQDG+CNGLQHYAALG
Sbjct: 121 ELAAALRSPIPTEYACALPIHQDGTCNGLQHYAALG 156
>gi|304274396|gb|ADM18945.1| DNA-dependent RNA polymerase [Sporidiobolus salmonicolor]
gi|304274398|gb|ADM18946.1| DNA-dependent RNA polymerase [Sporidiobolus salmonicolor]
Length = 165
Score = 214 bits (544), Expect = 2e-52, Method: Composition-based stats.
Identities = 95/156 (60%), Positives = 118/156 (75%), Gaps = 3/156 (1%)
Query: 571 KLSVARRMKDEEGFYYPHNLDFRGRAYPMHPHLNHLSSDVCRGVLEFAEGRPLGKSGLRW 630
KL +AR DE+ FY+PHNLDFRGRAYP+ P+L+H+ D+CRG+L F E +PLG+ GLRW
Sbjct: 4 KLEIARAFIDEK-FYFPHNLDFRGRAYPIPPNLSHIGDDMCRGLLLFGEAKPLGERGLRW 62
Query: 631 LKIHLANLFSGGVEKLSHDGRLAFVENHLYEIFDSAENPINGSRWWLTAEDPFQCLAACI 690
LKIHL+NL G +K S D R AF HL ++FDSA+ P++G RWWL A+DP+QCLA CI
Sbjct: 63 LKIHLSNL--TGFDKASFDEREAFAMEHLDDVFDSADQPLDGKRWWLKADDPWQCLATCI 120
Query: 691 NLSEALKSSSPHSVISHLPIHQDGSCNGLQHYAALG 726
L+ AL+S P LPIHQDG+CNGLQHYAALG
Sbjct: 121 ELAAALRSPVPTEYACALPIHQDGTCNGLQHYAALG 156
>gi|378406358|gb|AFB82771.1| RNA polymerase [Vibrio phage phi-A318]
Length = 928
Score = 211 bits (536), Expect = 2e-51, Method: Compositional matrix adjust.
Identities = 204/823 (24%), Positives = 351/823 (42%), Gaps = 133/823 (16%)
Query: 226 PLSEAIEREQKMQRTKKQK-AAYAPHIELLPADKVAVIVMHKMMGLVMAGHEDRCVQVVQ 284
P+++AI+ ++ K +A H++ L + A I + + ++ HE +
Sbjct: 53 PMADAIQAYIDYYTGRRGKPSACLMHLKCLSPEAAAYIAIKTIFD-GLSNHE---ITAQN 108
Query: 285 AAVHIGMAIEQEIR-----------IHSFLEKTKNYKRKKIIADTEEVLSKEKEL-LRKR 332
A +IG IE E+R I + E K D + ++ EKEL L
Sbjct: 109 LANNIGRRIEDEVRFTKLNNAAPKYIQAIKESLKKRNSNSYKFDHDVMVHAEKELKLLAD 168
Query: 333 VNSLIKS-KRVMEAQKLLKNEETK------------------PWGRDTQAKLGSRLVELL 373
+L+ + + +E +LL + K PW + +LG++L+E+
Sbjct: 169 FQALLGAGEEKLEIMRLLSIDNDKYQHLLDKAEFAIDIDRWIPWSDNDVIQLGAKLIEIF 228
Query: 374 IETAYVQHPVNPADYSPPDVRPAFRHRFKTILKHPGQKTTKRYGVVECDPLVLEGLDRSA 433
+ + D +P K + KTT + + ++G
Sbjct: 229 GKNMLM------------DGQPLIA---KQVNGQGRGKTTAKIVATDALETWIQGYKEVV 273
Query: 434 KHMLIPYVPMLVPPKKWKGYNKGGYLFLPSYVMRTHGSRKQQEALKSVTGNCMKKVFEAL 493
+M Y P +VPPK+WK GGY + ++ L+ +T M KV++AL
Sbjct: 274 GNMSPAYEPCVVPPKEWKSPFNGGYHSKEVSSNLPIAKVRDKKHLRRLTRKQMPKVYQAL 333
Query: 494 DTLGSTKWRVNKQVLSVLESIWVSGGNIAGLVDRNDVLIPEKPL--------SEDMTEV- 544
+ L + KW++N + ++ I + + G+ + P P+ ED+ +V
Sbjct: 334 NALQNVKWQINPSIYAIANEIRLRELPL-GMPEFKKYNKPACPVPAIYSDLRGEDLMQVL 392
Query: 545 --------QKWKWSVRKAKKINQERHSQRCDTELKLSVARRMKDEEGFYYPHNLDFRGRA 596
+ WK + +R S + L A + KD E ++ + LDFRGR
Sbjct: 393 DDDQKAAFKNWKRQIASIYAKENKRKSDVREVVATLDQANKFKDFENLHFVYTLDFRGRV 452
Query: 597 YPMHPHLNHLSSDVCRGVLEFAEGRPLGKSGLRWLKIHLANLFSGGVEKLSHDGRLAFVE 656
Y ++ D+ + ++ FA+ PLG +G W K+H AN++ G +K + R++ E
Sbjct: 453 YCHSSLVSPQGGDLQKALIRFADSMPLGSTGAYWFKVHGANVW--GWDKETFAERVSRCE 510
Query: 657 NHLYE--IFDSAENPINGSRWWLTAEDPFQCLAACINLSEAL----KSSSPHSVISHLPI 710
++ D A +PI + W A+ P+Q LA C + L + ++ SH+ +
Sbjct: 511 TEEFKEMCLDIAADPITFTD-WTKADKPWQFLAWCYEYAALLEWIDEGNNEQDFPSHIAV 569
Query: 711 HQDGSCNGLQHYAALGRNTLEAAAVNLVAGEKPADVYSEIAVRVHEIMKRDSNKDPSKHP 770
DGSC+G+QHY+A+ R+++ VNL+ EKP D+Y ++ V E M+ +N D P
Sbjct: 570 AMDGSCSGIQHYSAMLRDSVGGKEVNLLPSEKPQDIYGAVSKVVVEWMEAITNNDERDCP 629
Query: 771 ------QALLAKI------------------------LIDQVDRKLVKQTVMTSVYGVTF 800
+L+AK L V R + K+ VMT YG +
Sbjct: 630 IYDKLIDSLVAKFEKAKLTGDLESKARIMAYKFCEEWLRIGVTRSMTKKPVMTLPYGSSQ 689
Query: 801 VGAREQIK---RRLEEKGH---------------ITD---DRQLFAAACYAAKVTLTALG 839
+ R+ I + L+EK TD D L A +A+ +T A+G
Sbjct: 690 LTCRDSIADYLKDLQEKADNKARARGMKAGSIHAFTDSDGDLPLRDAISFASMLTWAAIG 749
Query: 840 EIFEAARSIMGWLGDCAKVIASENQPVRWTTPLGLPVVQP-YCKNERHLIRTSLQVLALQ 898
E+ AAR+ M ++ + IA +N+P+ W TP G V Q Y E I+T +
Sbjct: 750 EVVVAARAGMKYIKEVCSAIAKDNKPLEWMTPTGFIVKQAVYEVKEDKRIKTQMLGETFF 809
Query: 899 REG---NLVKIRKQRTAFPPNFVHSLDGSHMMMTAVACRDAGL 938
R + + R+ ++ PNFVHS+D SH+++ A D G+
Sbjct: 810 RTSVRTDKIDPRRMASSAAPNFVHSMDASHLVLAVCAFEDNGI 852
>gi|223304|prf||0706231A polymerase,RNA
Length = 883
Score = 209 bits (533), Expect = 5e-51, Method: Compositional matrix adjust.
Identities = 222/827 (26%), Positives = 358/827 (43%), Gaps = 135/827 (16%)
Query: 178 LRRRQVKQETEAWERMVDEYKELEAKMIEKRL--------APNLPHIKGLFLGWFGPLSE 229
L R Q+ E E++E ++ KM E++L A P I L +++
Sbjct: 32 LAREQLALEHESYEMGEARFR----KMFERQLKAGEVADNAAAKPLITTLLPKMIARIND 87
Query: 230 AIEREQKMQRTKKQKAAYAPHIELLPADKVAVIVMHKMMGLVMAGHEDRCVQVVQAAVHI 289
E E K +R K+ A ++ + + VA I + + + + ++ VQ V +A I
Sbjct: 88 WFE-EVKAKRGKRPTAFQ--FLQEIKPEAVAYITIKTTLACLTSA-DNTTVQAVASA--I 141
Query: 290 GMAIEQEIRIHSFLEKTKNYKRKKIIADTEEVLSKEKELLRKRVNSLIKSK--RVMEA-- 345
G AIE E R + + +K + +E L KRV + K +V+EA
Sbjct: 142 GRAIEDEARFGRIRDLEAKHFKKNV-----------EEQLNKRVGHVYKKAFMQVVEADM 190
Query: 346 --QKLLKNEETKPWGRDTQAKLGSRLVELLIETAYVQHPVNPADYSPPDVRPAFRHRFKT 403
+ LL E W ++ +G R +E+LIE+ + + R
Sbjct: 191 LSEGLLGGEAWSSWHKEDSIHVGVRCIEMLIEST--------------GMVSSHRQNAGV 236
Query: 404 ILKHPGQKTTKRYGVVECDPLVLEGLDRSAKHM--LIP-YVPMLVPPKKWKGYNKGGYLF 460
+ GQ + +E P E + A + + P + P +VPPK W G GGY
Sbjct: 237 V----GQDSE----TIELAPEYAEAIAIRAGALAGISPMFQPCVVPPKPWTGITGGGYWA 288
Query: 461 ---LPSYVMRTHGSRKQQEALKSVTGNCMKKVFEALDTLGSTKWRVNKQVLSVLESI--W 515
P ++RTH ++AL M +V++A++ +T W++N++VL+V I W
Sbjct: 289 NGRRPLALVRTH----SKKALMRYEDVYMPEVYKAINIAQNTAWKINRKVLAVANVIARW 344
Query: 516 --VSGGNIAGLVDRNDVLIPEKPLSEDMT--EVQKWK-----WSVRKAKKINQERHSQRC 566
+I ++R + +P KP DM + WK + R C
Sbjct: 345 KHYPVEDIPA-IEREE--LPMKPEDIDMNPEALTAWKRLPLLCTARTGLASLAVSALSSC 401
Query: 567 DTE-LKLSVARRMKDEEGFYYPHNLDFRGRAYPMHPHLNHLSSDVCRGVLEFAEGRPLGK 625
++ + L R P+N+D+RGR Y + N +D+ +G+L A+G+P+GK
Sbjct: 402 LSKPISLLTIRPPGS------PYNMDWRGRVYAVS-MFNPQGNDMTKGLLTLAKGKPIGK 454
Query: 626 SGLRWLKIHLANLFSGGVEKLSHDGRLAFVENHLYEIFDSAENPINGSRWWLTAEDPFQC 685
G WLKIH AN GV+K+ R+ F+E + I A++P+ + WW + PF
Sbjct: 455 EGYYWLKIHGAN--CAGVDKVPFPERIKFIEENHENIMACAKSPLENT-WWAEQDSPFCF 511
Query: 686 LAACINLSEALKSSSPHSVISHLPIHQDGSCNGLQHYAALGRNTLEAAAVNLVAGEKPAD 745
LA C + ++ LP+ DGSC+G+QH++A+ R+ + AVNL+ E D
Sbjct: 512 LAFCFEYAGVRHHGLSYNC--SLPLAFDGSCSGIQHFSAMLRDEVGGRAVNLLPSETVQD 569
Query: 746 VYSEIAVRVHEIMKRDSNKDPSKH-------------------PQALLAKILIDQVDRKL 786
+Y +A +V+EI++ D+ +AL + L V R +
Sbjct: 570 IYGIVAKKVNEILQADAINGTDNEVVTVTDENTGEISEKVKLGTKALAGQWLAHGVTRSV 629
Query: 787 VKQTVMTSVYGVTFVGAREQIKRRLEEKGHITDDRQLFA----AACYAAKVTLTALGEIF 842
K++VMT YG G R+Q+ + + +F AA Y AK+ ++
Sbjct: 630 TKRSVMTLAYGSKEFGFRQQVLEDTIQPATDSGKGPMFTQPNQAAGYMAKLIWESVSVTV 689
Query: 843 EAARSIMGWLGDCAKVIASENQ------------PVRWTTPLGLPVVQPYCK------NE 884
AA M WL AK++A+E + V W TP G PV Q Y K N
Sbjct: 690 VAAVEAMNWLKSAAKLLAAEVKDKKTGESSRKRCAVHWVTPDGFPVWQEYQKPIQTRLNL 749
Query: 885 RHLIRTSLQVLALQREGNLVKIRKQRTAFPPNFVHSLDGSHMMMTAV 931
L + LQ + + + KQ + PNFVHS DGSH+ T V
Sbjct: 750 MFLGQFRLQPTINTNKDSEIDAHKQESGIAPNFVHSQDGSHLRKTVV 796
>gi|402588219|gb|EJW82153.1| DNA-dependent RNA polymerase, partial [Wuchereria bancrofti]
Length = 319
Score = 208 bits (530), Expect = 1e-50, Method: Compositional matrix adjust.
Identities = 115/246 (46%), Positives = 147/246 (59%), Gaps = 14/246 (5%)
Query: 700 SPHSVISHLPIHQDGSCNGLQHYAALGRNTLEAAAVNLVAGEKPADVYSEIAVRVHEIMK 759
+P + +SHLPI+QDGSCNGLQHYAALGR+ VNLV EKP+DVYS +A RV +
Sbjct: 1 NPTTFVSHLPIYQDGSCNGLQHYAALGRDQEGGKEVNLVPAEKPSDVYSSVAARVEQKRL 60
Query: 760 RDSNKDPSK-HPQAL-LAKILIDQVDRKLVKQTVMTSVYGVTFVGAREQIKRRLEEKGHI 817
D S+ H AL L ++ V RK++KQTVMT+VYGVT GAR QI+R+L K
Sbjct: 61 EDEQSPESEVHDLALSLRTVMPGPVSRKVIKQTVMTTVYGVTMNGARRQIERQL--KAME 118
Query: 818 TDDRQLFAAACYAAKVTLTALGEIFEAARSIMGWLGDCAKVIASENQPVRWTTPLGLPVV 877
D + A Y A T +L + F ++ + W DCA+ I V W TPLGLPV
Sbjct: 119 IDSNERMKYATYLADRTFRSLNDAFTSSMKMKDWFRDCAEAIVKLMHTVEWITPLGLPVY 178
Query: 878 QPYCKNERHLIRTSLQVLALQREGNLVKIRKQRTAFPPNFVHSLDGSHMMMTAVACRDAG 937
QPY + T ++ + R L K KQ AFPPNFVHSLD +HMM+TA+ CR G
Sbjct: 179 QPY-------LETKMEENKVYR---LPKTIKQINAFPPNFVHSLDSTHMMLTALNCRRLG 228
Query: 938 LHFAGL 943
+ FA +
Sbjct: 229 ITFAAV 234
>gi|313211715|emb|CBY40657.1| unnamed protein product [Oikopleura dioica]
Length = 1238
Score = 208 bits (529), Expect = 1e-50, Method: Compositional matrix adjust.
Identities = 142/523 (27%), Positives = 242/523 (46%), Gaps = 39/523 (7%)
Query: 441 VPMLVPPKKWKGYN---KGGYLFLPSYVMRTHGSR-------KQQEALKSVTGNCMKKVF 490
+PML PP+ +K ++ KG +L P +++ R ++ + + +
Sbjct: 601 MPMLCPPRPYKIFDNQIKGQFLTSPRLLVKKKKMRNPKPFHIEESPGWRQYPKEKINHML 660
Query: 491 EALDTLGSTKWRVNKQVLSVLESIWVSGGNIA---GLVDRNDVLIPEKPLSEDMTEVQKW 547
A + + W +NK+++ VLE + GG + D D+ K + T +
Sbjct: 661 TACNAISQQSWSINKEIVKVLEEVTKEGGMYTLKIPMRDCWDISHGIKSIVTTSTSDPLY 720
Query: 548 KWSVRKAKKINQERHSQRCDTELKLSVARRMKDEEGFYYPHNLDFRGRAYPMHPHLNHLS 607
+ ++ E + L + + + F+ P +LD+RGR YP +N LS
Sbjct: 721 NRHKQVETRLRVEEKGLYVTFQSHLGLVKYFSQFDEFWLPLDLDYRGRIYPTTAIMNPLS 780
Query: 608 SDVCRGVLEFAEGRPLGK------SGLRWLKIHLANLFSGGVEKLSHDGRLAFVENHLYE 661
SD R F + + LG +G WL I +L S +K +H L + + +
Sbjct: 781 SDPYRASFLFGKAKKLGGRQKNGFTGFDWLLIQCISL-SDKKKKATHGEMLHYAWQNFHA 839
Query: 662 IFDSAENPINGSRWWLTAEDPFQCLAACINLSEALKSSSPHSVISHLPIHQDGSCNGLQH 721
I DS +P+ G RWW T E PFQ LAAC+ + +A + P + + +H DG+CNG QH
Sbjct: 840 ICDSGRDPLTGYRWWETCEKPFQVLAACMEIWKATQLDDPSQYETKISVHMDGTCNGFQH 899
Query: 722 YAALGRNTLEAAAVNLVAGEKPADVYSEIAVRVHEIMKRDSNKDPSKHPQALLAKILIDQ 781
Y+A+GR+T+ A N++ E+P+D Y I ++M D + + + +AKI
Sbjct: 900 YSAMGRDTIGAIFTNVLPTERPSDFYQSILDSALKLMDEDIAAEGANFEKLRVAKIARKV 959
Query: 782 VDRKLVKQTVMTSVYGVTFVGAREQIKRRLEEKGHITDDRQLFAAACYAAKVTLTALGEI 841
V R +VK+ VM YG++ GA + + L K D L A Y + +++
Sbjct: 960 VTRSIVKRPVMAIPYGLSVRGAVDICRNNLHGKISSAD---LTPVAQYIIRNLFSSINST 1016
Query: 842 FEAARSIMGWLGDCAKVIASE-NQPVRWTTPLGLPVVQPYCKNERHLIRTSLQVLALQRE 900
F + +I WL + +S+ P+ + +P+G PV Q K+ +TS++VL +
Sbjct: 1017 FRNSMAIKQWLAGYNRYCSSKLGVPIEYISPMGFPVSQIGYKSMLQR-KTSMEVLVAAVD 1075
Query: 901 GNLVKIRKQRT--AFP------------PNFVHSLDGSHMMMT 929
N +K + FP PNFVH++D SH++M+
Sbjct: 1076 ENRIKNERDNCYGVFPAADGQRSGNSLSPNFVHAIDASHLLMS 1118
>gi|356507250|ref|XP_003522382.1| PREDICTED: uncharacterized protein LOC100794785 [Glycine max]
Length = 363
Score = 204 bits (520), Expect = 2e-49, Method: Compositional matrix adjust.
Identities = 101/118 (85%), Positives = 105/118 (88%), Gaps = 1/118 (0%)
Query: 780 DQVDRKLVKQTVMTSVYGVTFVGAREQIKRRLEEKGHITDDRQLFAAACYAAKVTLTALG 839
+Q+DRKLVKQTV TSVYGVTFVGAREQIKRRLEEKG ITD++ LFAAACYAAKVTLTALG
Sbjct: 36 EQIDRKLVKQTVRTSVYGVTFVGAREQIKRRLEEKGLITDEKLLFAAACYAAKVTLTALG 95
Query: 840 EIFEAARSIMGWLGDCAKVIASENQPVRWTTPLGLPVVQPYCKNERHLI-RTSLQVLA 896
EIF AAR IMGWLGDCAKVIA ENQPV WTTPLGLPVVQPYCK ERHLI R L V A
Sbjct: 96 EIFGAARVIMGWLGDCAKVIAFENQPVCWTTPLGLPVVQPYCKTERHLIAREVLDVAA 153
>gi|289976616|gb|ADD21661.1| DNA-dependent RNA polymerase [Caulobacter phage Cd1]
Length = 817
Score = 202 bits (513), Expect = 1e-48, Method: Compositional matrix adjust.
Identities = 198/780 (25%), Positives = 349/780 (44%), Gaps = 90/780 (11%)
Query: 182 QVKQETEAWERMVDEYKELEAKMIEKRLAPNLPHIKGLFLGWFGPLSEAIEREQKMQRTK 241
Q++ E + ++ + + +K E A + P+ ++ + PL+ I+ + ++
Sbjct: 5 QIELERQMYDFGRSRAERMMSKNEEAGRASSNPYAAAIYRRFVLPLAAMIQDDLDNRKPG 64
Query: 242 KQKAAYAPHIELLPADKVAVIVMHKMMGLVMAG--------HEDRCVQVVQAAVHIGMAI 293
++KA +A +E + A+ ++ + + +G ++ G D Q A+ +G +I
Sbjct: 65 RRKA-HAVLLEGMDAEALSYLTVRSALGALLGGGTNMSGGRFGDYHPTARQLALDLGKSI 123
Query: 294 EQEIRIHSFLEKTKNYKRKKIIADTEEVLSKEKELLRKRVNSLIKSKRVMEAQKLLKNEE 353
E + F E ++ D + LSK + R R+ M+A+K
Sbjct: 124 YHEKCLALFAEADPAL-FYTLVNDLDRRLSKSE---RHRMTVF-----KMQAEK--NGVP 172
Query: 354 TKPWGRDTQAKLGSRLVELLIETAYV--QHPVNPADYSPPDVRPAFRHRFKTILKHPGQK 411
WG + ++G+ L++LL V Q + P+ A + + + ++
Sbjct: 173 VPDWGTAGKTQVGAYLLDLLEALGMVETQQSLIPS---------ARKEKIRASIE----- 218
Query: 412 TTKRYGVVECDPLVLEGLDRSAKHMLIP---YVPMLVPPKKWKGYNKGGYLF-----LPS 463
V+ LE + R H+ Y+P + P W GG+ L
Sbjct: 219 -------VKMTTDTLELVSRIKDHVSATTPYYLPCVEKPMDWVSIRDGGFHTKEMRRLQP 271
Query: 464 YVMRTHGSRKQQEALKSVTGNCMKKVFEALDTLGSTKWRVNKQVLSVLESIWVSGGNIAG 523
+ +++ G R +++ + V A++ ST W+VN +L + + ++
Sbjct: 272 FAIKSAGLRSEED----FEEGDVSTVLGAINACQSTAWQVNGVMLDTIRQV-AKHFDMEE 326
Query: 524 LVDRNDVLIPEKPLSEDMTEVQKWKWSV--RKAKKINQERHSQRCDTELKL--------- 572
++ + + P KP D QK+ ++ + I+ +R + TE+KL
Sbjct: 327 ILSQAEFPAPPKP---DWLSDQKFDHMTPPQQEEFIHWKREKAQWFTEMKLRGTKYGRFF 383
Query: 573 ---SVARRMKDEEGFYYPHNLDFRGRAYPMHPHLNHLSSDVCRGVLEFAEGRPLGK-SGL 628
SVA + +D + Y+ + DFRGR Y ++ SD+ + ++ FA+G+ L
Sbjct: 384 TATSVADKFRDFDEIYFVYFADFRGRLYAQTTGISPQGSDMQKALIRFAKGKALDTVEAE 443
Query: 629 RWLKIHLANLFSGGVEKLSHDGRLAFVENHLYEIFDSAENPINGSRWWLTAEDPFQCLAA 688
RW IH AN F G +K S D R+ + + + I AE+PI+ + +W A+ P Q LA
Sbjct: 444 RWFCIHGANKF--GFDKASLDDRVQWTKTNHNIIMACAEDPIS-NEFWQEADTPLQFLAW 500
Query: 689 CINLSEALKSSSPHSVISHLPIHQDGSCNGLQHYAALGRNTLEAAAVNLVAGEKPADVYS 748
C +E +PH+ S LPI DG+CNGLQ+++A+ R+ + A NLV G P D+Y
Sbjct: 501 CFEYAEW--RYNPHTFESRLPIGMDGTCNGLQNFSAMLRDEVGGKATNLVPGALPNDIYK 558
Query: 749 EIAVRVHEIMKRDSNKDPSKHPQALLAKILIDQVDRKLVKQTVMTSVYGVTFVGAREQIK 808
+A + E + R S D + + LA ++R LVK++VMT YG T + I
Sbjct: 559 MVA-ELTEHLLRLSEPDDAGYRDKWLAH----GINRTLVKRSVMTLPYGSTRFSCADFIV 613
Query: 809 RRLEEKGHITD--DRQLFAAACYAAKVTLTALGEIFEAARSIMGWLGDCAKVIASEN-QP 865
+ G + + AA + + A+G++ AR M WL CAK I + +
Sbjct: 614 GDYMKMGKCPEFAKEEYGKAAQFLSHFVWDAIGDVVVKAREAMNWLQQCAKTIIKDGEET 673
Query: 866 VRWTTPLGLPVVQPYCKNERHLIRTSL---QVLALQREGNLVKIRKQRTAFPPNFVHSLD 922
VRW +P G PVVQ Y + H IRT L L L+ + ++ + + PNFVHS D
Sbjct: 674 VRWVSPSGFPVVQLYAARQEHRIRTHLCGSAFLRLEVDTDIPDRNRHKNGVAPNFVHSCD 733
>gi|268570220|ref|XP_002640721.1| Hypothetical protein CBG19789 [Caenorhabditis briggsae]
Length = 1030
Score = 201 bits (511), Expect = 1e-48, Method: Compositional matrix adjust.
Identities = 110/312 (35%), Positives = 177/312 (56%), Gaps = 26/312 (8%)
Query: 441 VPMLVPPKKWKGYNKGGYLFLPSY-----VMRTHGSRKQQEALKSVTGNCMKK-VFEALD 494
+PM VPP+ W GG L+ + R E + + + VF+AL+
Sbjct: 519 LPMTVPPRPWIDRGTGGPLYTAGQDIIRNMFEFKSVRLNDEMRQRIQSPAQGRPVFDALN 578
Query: 495 TLGSTKWRVNKQVLSVLESIWVSGG--------NIAGLVDRNDVL-IPE-----KPLSED 540
LGST W +N+ +L L++++ G G+ R+D +P+ + ++
Sbjct: 579 QLGSTPWVINESMLDTLKTVFGQSGCKESEPLLEKLGIPMRHDTFDVPDFVREFGNVKKE 638
Query: 541 MTEVQKWKWSVRK---AKKINQERHSQRCDTELKLSVARRMKDEEGFYYPHNLDFRGRAY 597
+V+K++ +K A K+ E +S C + ++ +A + + ++PHN+DFRGR Y
Sbjct: 639 DVDVEKFRRYAKKKAEAVKMRNESNSLWCWMQYRVVLADHFRGQ-TLFFPHNMDFRGRVY 697
Query: 598 PMHPHLNHLSSDVCRGVLEFAEGRPLGKSGLRWLKIHLANLFSGGVEKLSHDGRLAFVEN 657
P+ P+L+H+ DV R +L+FA+ +PLG G WLK+H NL +G +++ S R+ E
Sbjct: 698 PLSPYLSHMGDDVNRCILKFAKSQPLGSHGFDWLKLHCVNL-TGTMKRASVADRMVEAER 756
Query: 658 HLYEIFDSAENPINGSRWWLTAEDPFQCLAACINLSEALK-SSSPHSVISHLPIHQDGSC 716
+ I DSA NP+NG +WW+++++P+Q LAAC+ + A+K S S S LP+HQDGSC
Sbjct: 757 LIPSILDSARNPLNGEKWWMSSDEPWQTLAACVEIENAMKYGSDVASFPSQLPVHQDGSC 816
Query: 717 NGLQHYAALGRN 728
NGLQHYAALGR+
Sbjct: 817 NGLQHYAALGRD 828
Score = 94.0 bits (232), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 48/120 (40%), Positives = 68/120 (56%), Gaps = 16/120 (13%)
Query: 827 ACYAAKVTLTALGEIFEAARSIMGWLGDCAKVIASENQPVRWTTPLGLPVVQPYCKNERH 886
A Y A+ T +L + F ++ ++ W AK + + V W TPLGLPVVQPYC+
Sbjct: 839 ARYLARKTFASLNDAFTSSMALKDWFRLIAKGASDLMKTVEWVTPLGLPVVQPYCR---- 894
Query: 887 LIRTSLQVLALQREGNLVKI---RKQRTAFPPNFVHSLDGSHMMMTAVACRDAGLHFAGL 943
L+R+ LV + KQ AFPPNFVHSLD +HMM+T++ C + G+ FA +
Sbjct: 895 ---------LLERKSKLVLVPIPMKQVDAFPPNFVHSLDSTHMMLTSLNCANRGITFAAV 945
>gi|159487225|ref|XP_001701634.1| predicted protein [Chlamydomonas reinhardtii]
gi|158280853|gb|EDP06609.1| predicted protein [Chlamydomonas reinhardtii]
Length = 311
Score = 200 bits (509), Expect = 3e-48, Method: Composition-based stats.
Identities = 108/239 (45%), Positives = 142/239 (59%), Gaps = 5/239 (2%)
Query: 709 PIHQDGSCNGLQHYAALGRNTLEAAAVNLVAGEKPADVYSEIAVRVHEIMKRDSNKDPSK 768
P QDG+CNGLQHYAALGR+ AVNLV ++P DVY + +R + PS
Sbjct: 1 PRTQDGTCNGLQHYAALGRDLRGGTAVNLVPADRPQDVYQRVRIRPVAVWVLRHVHVPSS 60
Query: 769 HPQALLAKILIDQVDRKLVKQTVMTSVYGVTFVGAREQIKRRLEEKGHITDDRQLFAAAC 828
+ VDRKLVKQ+VMT VYGVTFVGAR+QI+ LEE+G + ++ A
Sbjct: 61 FSTCSRPPWIHGHVDRKLVKQSVMTYVYGVTFVGARDQIESPLEERGW-GNPKERRKVAT 119
Query: 829 YAAKVTLTALGEIFEAARSIMGWLGDCAKVIASENQPVRWTTPLGLPVVQPYCKNERHLI 888
Y A + ++ ++F A + WL DCAK S PV WT+PLG PV QPY K +
Sbjct: 120 YVAGIVFESMSDVFGPAVRVRSWLEDCAKYAVSAGAPVVWTSPLGFPVEQPYRKVPTLSV 179
Query: 889 RTSLQVLALQREG----NLVKIRKQRTAFPPNFVHSLDGSHMMMTAVACRDAGLHFAGL 943
TSLQ +++ + + +RKQ + FPPN+VH LDG+HMMMTA A R+AG FA +
Sbjct: 180 HTSLQTFSIRDNSRDAVSPLDVRKQCSGFPPNYVHCLDGAHMMMTARAVREAGACFAAV 238
>gi|448260253|ref|YP_007348349.1| DNA-dependent RNA polymerase [Cronobacter phage vB_CskP_GAP227]
gi|428231494|gb|AFY63147.1| DNA-dependent RNA polymerase [Cronobacter phage vB_CskP_GAP227]
Length = 816
Score = 200 bits (508), Expect = 3e-48, Method: Compositional matrix adjust.
Identities = 198/735 (26%), Positives = 332/735 (45%), Gaps = 116/735 (15%)
Query: 246 AYAPHIELLPADKVAVIVMHKMMGLVMAGHEDRCVQVVQAAVHIGMAIEQEIRIHSFLEK 305
AY+P + L D VA++ + + + L +AG VQ IG + E+ + +F +
Sbjct: 72 AYSPLLFSLDMDAVALLAISEALKLCVAG----PVQATTLGFAIGKVLYGELALAAFRDM 127
Query: 306 TKNYKRKKIIADTEEVLSKEKELLRKRVNSLIKSKRVMEAQKLLKNEETKPWGRDTQAKL 365
N + + D + +SK+ LR R+ M+AQK E W + ++
Sbjct: 128 NANL-YEVLTEDLQRKMSKD---LRHRMTIF-----RMQAQK--NGIELPEWTPTQKLQV 176
Query: 366 GSRLVELLIETAYVQHPVNPADYSPPDVRPAFRHRFKTILKHPGQKTTKRYGVVECDPLV 425
G ++ L+ S P+ + LK G+KT +Y +V+ P +
Sbjct: 177 GMYVMGLM---------------STPNEDGEVL--LENTLKSYGKKT--KY-MVDLAPEI 216
Query: 426 ---LEGLDRSAKHMLIPYVPMLVPPKKWKGYNKGGYLFLPSYVMRT----HGSRKQQEAL 478
++G++ S P L+PP+ W G +G F +R GS Q E +
Sbjct: 217 HKLMQGIEGSIIGRSGFAAPCLIPPQDWTG-EEGVGGFHGDLKIRAVRFFKGSTYQWEVM 275
Query: 479 KSVTGNCMKKVFEALDTLGSTKWRVNKQVLSVLESIWVSGGNIAGLVDRNDV---LIPEK 535
S G+ + L+ W+VN +L +L+ + G I V+ + + PE+
Sbjct: 276 NS-EGHNPEVTLAMLNAHQKVAWKVNPFILDLLKGMRYHGYGIRKKVEFSSAHEKIKPER 334
Query: 536 -----PLSE-DMTEVQK-----WKWSVR----KAKKINQERHSQRCDTELKLSVARRMKD 580
+ E D T+VQ+ WK +R +AK+I R RC+ + +S A+ +
Sbjct: 335 LEWLDTVKEGDFTDVQQYNFETWKRKMRDWHTEAKRIG--RVELRCN--MAISAAQEVST 390
Query: 581 EEGFYYPHNLDFRGRAYPMHPHLNHLSSDVCRGVLEFAEGRPLGK-SGLRWLKIHLANLF 639
+ FYY + +D RGR YP+ LN SDV + +L A+G P+ L W K+ +A+ F
Sbjct: 391 LDRFYYVYQVDNRGRMYPVSGLLNPQGSDVQKSLLHAADGEPIDTPEALWWFKMGIASKF 450
Query: 640 SGGVEKLSHDGRLAFVENHLYEIFDSAENPI--NGSRWWLTAEDPFQCLAACINLSEALK 697
G++KL+ + + +V+++ I +A +P+ + WW A+ P Q +A C
Sbjct: 451 --GIDKLAPEDCVKWVDDNHANIIRAAGDPLDRDAFNWWTGADKPLQFIALCDEYRR--Y 506
Query: 698 SSSPHSVISHLPIHQDGSCNGLQHYAALGRNTLEAAAVNLVAGEK--PADVYSEIAVRVH 755
+ P +S + + DG+CNGLQ+Y+A+ R+++ A NL++ + P D+Y ++A
Sbjct: 507 NEDPAGFVSRIAVAMDGTCNGLQNYSAMLRDSVGGRATNLISADNGIPNDIYGDVA---K 563
Query: 756 EIMKRDSNKDPSKHPQALLAKILIDQVDRKLVKQTVMTSVYGVTFVGAREQIKRRLEEKG 815
KR + S L + DR L K++VMT VYG TF R+ I
Sbjct: 564 ASFKRLGRMEASN----LRTDWVNYGFDRSLTKKSVMTQVYGSTFGTCRKSIIEYCY--- 616
Query: 816 HITDDRQLFAA-----ACYAAKVTLTALGEIFEAARSIMGWLGDCAKVIASEN-QPVRWT 869
D+Q+F A YAA++ +G++ A+ M WL A + E + + W
Sbjct: 617 ----DKQIFEGTEYDHADYAARLVWDGIGDVVVKAKEAMDWLRKSAGAVMKEGAEYITWL 672
Query: 870 TPLGLPVVQPYCKNERHLIRTSLQVLALQREGNLVKIR-------------KQRTAFPPN 916
P G VVQ Y K++ +R + G V++R + R A PPN
Sbjct: 673 APTGFRVVQVYNKHKTMQVRAHI--------GKNVRLRVPDPENIDGPDKMRHRNALPPN 724
Query: 917 FVHSLDGSHMMMTAV 931
F+HS+D SHM +V
Sbjct: 725 FIHSIDSSHMAFVSV 739
>gi|15505|emb|CAA24333.1| unnamed protein product [Enterobacteria phage T7]
Length = 883
Score = 199 bits (507), Expect = 5e-48, Method: Compositional matrix adjust.
Identities = 221/826 (26%), Positives = 352/826 (42%), Gaps = 133/826 (16%)
Query: 178 LRRRQVKQETEAWERMVDEYKELEAKMIEKRL--------APNLPHIKGLFLGWFGPLSE 229
L R Q+ E E++E ++ KM E++L A P I L +++
Sbjct: 32 LAREQLALEHESYEMGEARFR----KMFERQLKAGEVADNAAAKPLITTLLPKMIARIND 87
Query: 230 AIEREQKMQRTKKQKAAYAPHIELLPADKVAVIVMHKMMGLVMAGHEDRCVQVVQAAVHI 289
E E K +R K+ A ++ + + VA I + + + + ++ VQ V +A I
Sbjct: 88 WFE-EVKAKRGKRPTAF--QFLQEIKPEAVAYITIKTTLACLTSA-DNTTVQAVASA--I 141
Query: 290 GMAIEQEIRIHSFLEKTKNYKRKKIIADTEEVLSKEKELLRKRVNSLIKSK--RVMEA-- 345
G AIE E R + + +K + +E L KRV + K +V+EA
Sbjct: 142 GRAIEDEARFGRIRDLEAKHFKKNV-----------EEQLNKRVGHVYKKAFMQVVEADM 190
Query: 346 --QKLLKNEETKPWGRDTQAKLGSRLVELLIETAYVQHPVNPADYSPPDVRPAFRHRFKT 403
+ LL E W ++ +G R +E+LIE+ + HR
Sbjct: 191 LSKGLLGGEAWSSWHKEDSIHVGVRCIEMLIESTGM----------------VSLHRQNA 234
Query: 404 ILKHPGQKTTKRYGVVECDPLVLEGLDRSAKHM--LIP-YVPMLVPPKKWKGYNKGGYLF 460
+ +T +E P E + A + + P + P +VPPK W G GGY
Sbjct: 235 GVVGQDSET------IELAPEYAEAIATRAGALAGISPMFQPCVVPPKPWTGITGGGYWA 288
Query: 461 ---LPSYVMRTHGSRKQQEALKSVTGNCMKKVFEALDTLGSTKWRVNKQVLSVLESI--W 515
P ++RTH ++AL M +V++A++ +T W++NK+VL+V I W
Sbjct: 289 NGRRPLALVRTH----SKKALMRYEDVYMPEVYKAINIAQNTAWKINKKVLAVANVITKW 344
Query: 516 --VSGGNIAGLVDRNDVLIPEKPLSEDMTEVQKWKWSVRKAKKINQERHSQRCDTELKLS 573
+I ++R + +P KP DM W A + R + + L
Sbjct: 345 KHCPVEDIPA-IEREE--LPMKPEDIDMNPEALTAWKRAAAAVYRKTRLASLAVSALSSC 401
Query: 574 VARRMK----DEEGFYYPHNLDFRGRAYPMHPHLNHLSSDVCRGVLEFAEGRPLGKSGLR 629
+++ + G R A M N +D+ +G L A+G+P+GK G
Sbjct: 402 LSKPISLLTIRPSGSLTTWTGAVRVYAVSM---FNPQGNDMTKGRLTLAKGKPIGKEGYY 458
Query: 630 WLKIHLANLFSGGVEKLSHDGRLAFVENHLYEIFDSAENPINGSRWWLTAEDPFQCLAAC 689
WLKIH AN GV+K+S R+ F+E + I A++P+ + WW + PF LA C
Sbjct: 459 WLKIHGAN--CAGVDKVSFPERIKFIEENHENIMACAKSPLENT-WWAEQDSPFCFLAFC 515
Query: 690 INLSEALKSSSPHSVISH---LPIHQDGSCNGLQHYAALGRNTLEAAAVNLVAGEKPADV 746
+ H +S+ LP+ DGSC+G+QH++A+ R+ + AVNL+ E D+
Sbjct: 516 FEYA-----GVQHHGLSYNCSLPLAFDGSCSGIQHFSAMLRDEVGGRAVNLLPSETVQDI 570
Query: 747 YSEIAVRVHEIMKRDSNKDPSKH-------------------PQALLAKILIDQVDRKLV 787
Y +A +V+EI++ D+ +AL + L V R +
Sbjct: 571 YGIVAKKVNEILQADAINGTDNEVVTVTDENTGEISEKVKLGTKALAGQWLAYGVTRSVT 630
Query: 788 KQTVMTSVYGVTFVGAREQIKRRLEEKGHITDDRQLFA----AACYAAKVTLTALGEIFE 843
K++VMT YG G R+Q+ + + +F AA Y AK+ ++
Sbjct: 631 KRSVMTLAYGSKEFGFRQQVLEDTIQPAIDSGKGLMFTQPNQAAGYMAKLIWESVSVTVV 690
Query: 844 AARSIMGWLGDCAKVIASENQ------------PVRWTTPLGLPVVQPYCK------NER 885
AA M WL AK++A+E + V W TP G PV Q Y K N
Sbjct: 691 AAVEAMNWLKSAAKLLAAEVKDKKTGEILRKRCAVHWVTPDGFPVWQEYKKPIQTRLNLM 750
Query: 886 HLIRTSLQVLALQREGNLVKIRKQRTAFPPNFVHSLDGSHMMMTAV 931
L + LQ + + + KQ + PNFVHS DGSH+ T V
Sbjct: 751 FLGQFRLQPTINTNKDSEIDAHKQESGIAPNFVHSQDGSHLRKTVV 796
>gi|32128444|ref|NP_858979.1| DNA-dependent RNA polymerase; phage monosubunit type [Xanthomonas
phage Xp10]
gi|31788507|gb|AAP58699.1| 32L [Xanthomonas phage Xp10]
Length = 746
Score = 199 bits (507), Expect = 5e-48, Method: Compositional matrix adjust.
Identities = 153/530 (28%), Positives = 249/530 (46%), Gaps = 56/530 (10%)
Query: 422 DPLVLEGLDRSAKHMLIPYVPMLVPPKKWKGYNKGGYLF-----LPSYVMRTHGSRKQQE 476
D + + ++R+A Y+P + P W Y GG+ L YV++ G E
Sbjct: 190 DDITAKTIERAAY-----YLPCVEQPMPWTSYASGGWHTAEMRRLMPYVIKGKG-----E 239
Query: 477 ALKSVTGNCMKKVFEALDTLGSTKWRVNKQVLSVLESIWVSGGNIAGLVDRNDVL-IPEK 535
K++ + + +++L T WRVN ++L L+ IAG + ++++ +P+
Sbjct: 240 YHKALQAADLSQELACINSLQRTAWRVNARMLDALD-------QIAGKISIDEIVAVPD- 291
Query: 536 PLSEDMTEVQKWKWSVRKAKKINQERHSQRCDTELKLSVARRMKDEEGFYYPHNLDFRGR 595
+ +W +++ + + R+ Q +VA + Y+ + DFRGR
Sbjct: 292 ------ADAPRW---LKEEHRKTKNRYKQ------VRTVANKFLAYPAIYFVYFCDFRGR 336
Query: 596 AYPMHPHLNHLSSDVCRGVLEFAEGRPL-GKSGLRWLKIHLANLFSGGVEKLSHDGRLAF 654
Y M +N SD+ + +LEFA+G PL + + W I +N + G +K S R+ +
Sbjct: 337 KYAMGSGINPQGSDLQKCLLEFAKGMPLKDQQAVDWFMITGSNRY--GFDKCSLADRVQW 394
Query: 655 VENHLYEIFDSAENPINGSRWWLTAEDPFQCLAACINLSEALKSSSPHSVISHLPIHQDG 714
++ EI AE+P+ G +W A P Q LA C + A P + +S + DG
Sbjct: 395 CHDNHNEIIACAEDPLTG-LFWKGASKPLQFLAWCFEYA-AFIEQGP-AFVSRVSADMDG 451
Query: 715 SCNGLQHYAALGRNTLEAAAVNLVAGEKPADVYSEIAVRVHEIMKRDSNKDPSKHPQALL 774
+CNGLQH++A+ R+ + AAA NLV + P+D+Y+ +A + E + +D + P L+
Sbjct: 452 TCNGLQHFSAMLRDEIGAAATNLVPADLPSDIYAIVARKTQERL-----QDAERDPDGLV 506
Query: 775 AKILIDQVDRKLVKQTVMTSVYGVTFVGAREQIKRRLEEKGHIT--DDRQLFAAACYAAK 832
K L ++R + K++ MT YG T + ++ KG D + AA +
Sbjct: 507 EKWLQHGINRSITKRSTMTLPYGSTRFSSAGFVRDDYLLKGKAPEFDSSEHNKAAQLLST 566
Query: 833 VTLTALGEIFEAARSIMGWLGDCAKVIASENQP-VRWTTPLGLPVVQPYCKNERHLIRTS 891
A+GE AR M WL AK + P + WTTP G PV Q Y E +RT
Sbjct: 567 FIWPAIGETVVKAREGMDWLQTAAKQAIKQGAPALSWTTPTGFPVHQVYNVMEIKKVRTK 626
Query: 892 LQVLALQR---EGNLVKIRKQRTAFPPNFVHSLDGSHMMMTAVACRDAGL 938
L A R G++ +K PNFVHS+D SH+ T AC G+
Sbjct: 627 LAGAAQIRVYLPGDVADPKKHAAGAAPNFVHSMDASHLTATVNACAAVGI 676
>gi|167564987|ref|ZP_02357903.1| DNA-directed RNA polymerase [Burkholderia oklahomensis EO147]
Length = 565
Score = 197 bits (502), Expect = 2e-47, Method: Compositional matrix adjust.
Identities = 146/501 (29%), Positives = 240/501 (47%), Gaps = 32/501 (6%)
Query: 455 KGGYLFLPSYVMR-THGSRKQQEALKSVTGNCMKKVFEALDTLGSTKWRVNKQVLSVLES 513
+GGYL L + ++ T S AL + EAL+ + T+WR+N+ VL V
Sbjct: 5 QGGYLTLKTDAVKSTEFSNAHTAALDAPLKGAH---LEALNHIQKTRWRINRDVLDVAMG 61
Query: 514 IWVSGGNIAGLVDRNDVLIPEKPLSEDMTEVQKWKWSVRKAKKINQERHSQRCDTELKL- 572
V G ++G ++ +PE P D T + +K +R+ ++I+ E +++ LKL
Sbjct: 62 CKVRGLEVSGFPSAEEIPLPEYPAHLDKTSPE-FKTHIRERERIHTE-NARNAGMRLKLW 119
Query: 573 ---SVARRMKDEEGFYYPHNLDFRGRAYPMHPHLNHLSSDVCRGVLEFAEGRPLGKSGLR 629
+A + D ++PH DFRGR YP L+ + +G+LEF+E + G
Sbjct: 120 GLLQMAEELADFPALWFPHYADFRGRFYPRPQDLHTQGDSLVKGLLEFSEPVAITDRGWY 179
Query: 630 WLKIHLANLFSGGVEKLSHDGRLAFVENHLYEIFDSAENPINGSR---WWLTAEDPFQCL 686
W+++++AN F G +KL D R + +HL I A +P++ + +W T + P++ L
Sbjct: 180 WMRVNVANYF--GQDKLPLDERAQWTLDHLEGILAVATDPLDDHKAFEFWSTCDSPWEFL 237
Query: 687 AACINLSEA----LKSSSPHSVISHLPIHQDGSCNGLQHYAALGRNTLEAAAVNLVAGEK 742
AAC + L + + S + D +C+G+QH AAL ++ A VN++
Sbjct: 238 AACSEVKRVCDFMLANGTCEGHESRMVCRYDATCSGIQHLAALMKDEKSAVRVNVLPTGN 297
Query: 743 PADVYSEIAVRVHEIMKRDSNKDPSKHPQALLAKILIDQVDRKLVKQTVMTSVYGVTFVG 802
D+Y ++A E++ D +D A A +V+RK VK+ VMT+ YGV+ G
Sbjct: 298 REDIYKDVA----EVVMADVQRDTVNSATAATASQWAGKVERKTVKRAVMTTPYGVSERG 353
Query: 803 AREQIKRRLEEKG---HITDDRQLFAAACYAAKVTLTALGEIFEAARSIMGWLGDCAKVI 859
I +L + G HI + ++ +AAA Y + + AL E EA R M + A +
Sbjct: 354 ----ILTQLIQDGFADHIENGKERYAAADYLTQKIVGALDESIEAPRRAMDYFRSVAVFL 409
Query: 860 ASENQPVRWTTPLGLPVVQPYCKNERHLIRTSLQVLALQREGNLVKIR--KQRTAFPPNF 917
P+ W TP G Q Y K I T + L+ E + + KQ+ PN
Sbjct: 410 EERGLPLVWDTPSGFTGKQAYYKTAEKRIDTLHGKVMLRYEEPVAGFKPGKQKLGAAPNV 469
Query: 918 VHSLDGSHMMMTAVACRDAGL 938
VHS D +H+ + V + G+
Sbjct: 470 VHSFDAAHLALVCVEMKRRGV 490
>gi|158345171|ref|YP_001522878.1| putative RNA polymerase [Enterobacteria phage LKA1]
gi|114796467|emb|CAK25005.1| putative RNA polymerase [Pseudomonas phage LKA1]
Length = 811
Score = 197 bits (500), Expect = 3e-47, Method: Compositional matrix adjust.
Identities = 145/523 (27%), Positives = 240/523 (45%), Gaps = 44/523 (8%)
Query: 443 MLVPPKKWKGYNKGGY------LFLPSYVMRTHGSRKQQEALKSVTGNCMKKVFEALDTL 496
M P W G GGY + P + + + ++ G C V + L
Sbjct: 234 MFAEPTPWDGAAGGGYYTERMKIDFPLRRVNRRTRKPLRRVIRDNVGKC-TDVLACANYL 292
Query: 497 GSTKWRVNKQVLSVLESIWVSGGNIAGLVDRNDVLI----------PEKPLSEDMTEVQK 546
+ + ++ L +++ +W SGG G+ R + ++
Sbjct: 293 QAQAFSIHTPTLELIKQVWNSGGGALGIPKREAPPEPAFPFPETWDKDSATEAELERFAS 352
Query: 547 WK-----WSVRKAKKINQERHSQRCDTELKLSVARRMKDEEGFYYPHNLDFRGRAYPMHP 601
WK W + K K++ + + Q L++S + ++P +D RGR Y
Sbjct: 353 WKRRMHAWHMGK-KELRKAQ--QGIGQALRVSAGAAAR----VWFPTFIDSRGRYY-YRG 404
Query: 602 HLNHLSSDVCRGVLEFAEGRPLGKSGLRWLKIHLANLFSGGVEKLSHDGRLAFVENHLYE 661
LN ++C+ +L FA+ RPLG+ GL W+++H+AN F G +K D R A+ E
Sbjct: 405 VLNPQGDEMCKALLHFADKRPLGERGLYWIQVHVANCF--GEDKARFDARAAWAVERKAE 462
Query: 662 IFDSAENPINGSRWWLTAEDPFQCLAACINLSEALKSSSPHSVISHLPIHQDGSCNGLQH 721
+F + E P + + A+ P AA EA +S +P + + LPIH D +C+GLQH
Sbjct: 463 LFAALEAPADSC--FAEADTPLGAFAAVWEWREAERSGNPAAYCTGLPIHMDATCSGLQH 520
Query: 722 YAALGRNTLEAAAVNLV--AGEKPADVYSEIAVRVHEIMKRDSNKDPSKHPQALLAKILI 779
++A+ R+ + VNL G+ AD+Y ++A + RD+ SK LAK+
Sbjct: 521 FSAMLRDPVGGQYVNLYDSGGDSKADIYRKVAEVAQTRINRDAANPASKDWH--LAKLWT 578
Query: 780 D-QVDRKLVKQTVMTSVYGVTFVGAREQIKRRLEEKGHIT-DDRQLFAAACYAAKVTLTA 837
++ R L K VMT VYG T G E I LEE+ I D ++F A Y +V +A
Sbjct: 579 QWEIPRTLAKGPVMTYVYGATLRGVAEGIADWLEEQQAIVPDGVRIFDLAYYLGRVLFSA 638
Query: 838 LGEIFEAARSIMGWLGDCAKVIASENQPVRWTTPLGLPVVQPYCKNERHLIRT---SLQV 894
+ ++ AA + M WL + A+ A + P+ W +P GL V Y H ++ +
Sbjct: 639 IEDVVPAAAAAMRWLRERARSAAGDT-PMLWFSPTGLLVEHDYRDFVEHRVKIRSCGITD 697
Query: 895 LALQREGNLVKIRKQRTAFPPNFVHSLDGSHMMMTAVACRDAG 937
+ ++ + + + + + A PNFVH+LD +H+ TA D G
Sbjct: 698 IVVREDLDQTRGNRMQNAVAPNFVHALDAAHLTFTARLLEDGG 740
>gi|84662626|ref|YP_453591.1| putative DNA-directed RNA polymerase [Xanthomonas phage OP1]
gi|84570675|dbj|BAE72738.1| putative DNA-directed RNA polymerase [Xanthomonas oryzae phage OP1]
Length = 774
Score = 197 bits (500), Expect = 3e-47, Method: Compositional matrix adjust.
Identities = 156/531 (29%), Positives = 251/531 (47%), Gaps = 58/531 (10%)
Query: 422 DPLVLEGLDRSAKHMLIPYVPMLVPPKKWKGYNKGGYLF-----LPSYVMRTHGSRKQQE 476
D + + ++R+A Y+P + P W Y GG+ L YV++ G E
Sbjct: 218 DDITAKTIERAAY-----YLPCVEQPMPWTSYANGGWHTAEMRRLMPYVIKGKG-----E 267
Query: 477 ALKSVTGNCMKKVFEALDTLGSTKWRVNKQVLSVLESIWVSGGNIAGLVDRNDVL-IPEK 535
K++ + + +++L T WRVN ++L+ +E IAG + ++++ +P+
Sbjct: 268 YHKALQAADLSQELACINSLQGTAWRVNTRMLAAME-------KIAGKISIDEIVAVPD- 319
Query: 536 PLSEDMTEVQKW-KWSVRKAKKINQERHSQRCDTELKLSVARRMKDEEGFYYPHNLDFRG 594
+ +W K RK K R+ Q + VA++ + Y+ + DFRG
Sbjct: 320 ------ADAPRWEKEEYRKTKN----RYKQVSN------VAKKFEAYPAIYFVYFCDFRG 363
Query: 595 RAYPMHPHLNHLSSDVCRGVLEFAEGRPLGKS-GLRWLKIHLANLFSGGVEKLSHDGRLA 653
R Y M +N SD+ + +LEF+ G PL + + W I AN + G +K S R+
Sbjct: 364 RKYAMGSGINPQGSDLQKCLLEFSTGLPLTDANAVDWFLITGANRY--GYDKCSLQDRVQ 421
Query: 654 FVENHLYEIFDSAENPINGSRWWLTAEDPFQCLAACINLSEALKSSSPHSVISHLPIHQD 713
+ ++ EI +A++P+ G W A P Q LA C EA P +S L D
Sbjct: 422 WCHDNHGEILAAAQDPLTG-LLWKGASKPLQFLAWCFEY-EAFVEQGP-GFVSRLSADMD 478
Query: 714 GSCNGLQHYAALGRNTLEAAAVNLVAGEKPADVYSEIAVRVHEIMKRDSNKDPSKHPQAL 773
G+CNGLQH++A+ R+ + AA NL+ + P+D+Y+ +A R + +++ K L
Sbjct: 479 GTCNGLQHFSAMLRDDVGGAATNLLPADLPSDIYAIVAKRTQKRLEQ-----AEKDEDGL 533
Query: 774 LAKILIDQVDRKLVKQTVMTSVYGVT-FVGAREQIKRRLEE-KGHITDDRQLFAAACYAA 831
+ K L ++R + K++ MT YG T F A I+ L + K D + A +
Sbjct: 534 IDKWLSHGINRSVTKRSTMTLPYGSTRFSSAGFVIEDYLRKGKAPEFDPSEHNKAGQLLS 593
Query: 832 KVTLTALGEIFEAARSIMGWLGDCAKVIASENQP-VRWTTPLGLPVVQPYCKNERHLIRT 890
K A+GE AR M WL AK + P + WTTP G PV Q Y + + +RT
Sbjct: 594 KFIWPAIGETVIKAREGMDWLQAAAKQAIKQGAPALSWTTPTGFPVWQVYNQIQVKKVRT 653
Query: 891 SLQVLALQR---EGNLVKIRKQRTAFPPNFVHSLDGSHMMMTAVACRDAGL 938
+ A R G++ +K PNFVHS+D SH+ T C +AG+
Sbjct: 654 KMAGAAQIRVYVPGDVADAKKHAAGCAPNFVHSMDASHLTATVTKCAEAGI 704
>gi|31711650|ref|NP_853568.1| DNA-directed RNA polymerase [Enterobacteria phage SP6]
gi|31505654|gb|AAP48747.1| gp8 [Enterobacteria phage SP6]
gi|40787026|gb|AAR90000.1| 7 [Enterobacteria phage SP6]
Length = 874
Score = 196 bits (499), Expect = 4e-47, Method: Compositional matrix adjust.
Identities = 196/787 (24%), Positives = 340/787 (43%), Gaps = 110/787 (13%)
Query: 224 FGPLSEAIEREQKMQRTKKQKAAYA-PHIELLPADKVAVIVMHKMMGLVMAGHEDRCVQV 282
P++E I+ ++ KK +A A ++ + + A I M +M ++ + D +Q
Sbjct: 50 IAPMAEGIQAYKEEYEGKKGRAPRALAFLQCVENEVAAYITMKVVMDML---NTDATLQA 106
Query: 283 VQAAVHIGMAIEQEIRIHSFLEKTKNY--KRKKIIADTEEVLSKEKELLRKRVNSLIKSK 340
+ A+ + IE ++R Y K KK + S+ K +++ K
Sbjct: 107 I--AMSVAERIEDQVRFSKLEGHAAKYFEKVKKSLK-----ASRTKSYRHAHNVAVVAEK 159
Query: 341 RVMEAQKLLKNEETKPWGRDTQAKLGSRLVELLIETAYVQHPVNPADYSPPDVRPAFRHR 400
V A+K + + W ++TQ ++G+ L+E+L + + P F
Sbjct: 160 SV--AEKDADFDRWEAWPKETQLQIGTTLLEILEGSVFYNG------------EPVFMRA 205
Query: 401 FKTILKHPGQKTTKRYGVVECDPLVLEGLDRSAKHMLIPYVPMLVPPKKWKGYNKGGYLF 460
+T G KT E + + Y P ++PP+ W+ GG+
Sbjct: 206 MRTY----GGKTIYYLQTSESVGQWISAFKEHVAQLSPAYAPCVIPPRPWRTPFNGGFHT 261
Query: 461 --LPSYVMRTHGSRKQQEALKSVTGNCMKKVFEALDTLGSTKWRVNKQVLSVLESIW--- 515
+ S + G+R E ++ +T M KV++A++ L +T+W++NK VL+V+E +
Sbjct: 262 EKVASRIRLVKGNR---EHVRKLTQKQMPKVYKAINALQNTQWQINKDVLAVIEEVIRLD 318
Query: 516 VSGG--NIAGLVDRNDVLIPEKPLS-----------EDMTEVQKWK----WSVRKAKKIN 558
+ G + L+D+ + P P+ ++M ++W+ W A+
Sbjct: 319 LGYGVPSFKPLIDKENK--PANPVPVEFQHLRGRELKEMLSPEQWQQFINWKGECARLYT 376
Query: 559 QE--RHSQRCDTELKLSVARRMKDEEGFYYPHNLDFRGRAYPMHPHLNHLSSDVCRGVLE 616
E R S+ + AR+ E Y+ + +D R R Y L+ S+D+ + +L
Sbjct: 377 AETKRGSKSAAVVRMVGQARKYSAFESIYFVYAMDSRSRVYVQSSTLSPQSNDLGKALLR 436
Query: 617 FAEGRPL-GKSGLRWLKIHLANLFSGGVEKLSHDGRLAFVENHLYEIF--DSAENPINGS 673
F EGRP+ G L+W I+ ANL+ G +K + D R++ V + ++ D A +P+ +
Sbjct: 437 FTEGRPVNGVEALKWFCINGANLW--GWDKKTFDVRVSNVLDEEFQDMCRDIAADPLTFT 494
Query: 674 RWWLTAEDPFQCLAACINLSEALK---SSSPHSVISHLPIHQDGSCNGLQHYAALGRNTL 730
+W A+ P++ LA C ++ L +HLP+HQDGSC+G+QHY+A+ R+ +
Sbjct: 495 QW-AKADAPYEFLAWCFEYAQYLDLVDEGRADEFRTHLPVHQDGSCSGIQHYSAMLRDEV 553
Query: 731 EAAAVNLVAGEKPADVYSEIAVRVHEIMKRDSNKDPSKHPQALLAKILID---------- 780
A AVNL + P D+Y +A V I K D + +
Sbjct: 554 GAKAVNLKPSDAPQDIYGAVAQVV--IKKNALYMDADDATTFTSGSVTLSGTELRAMASA 611
Query: 781 ----QVDRKLVKQTVMTSVYGVTFVGAREQI-----------------KRRLEEKGH-IT 818
+ R L K+ VMT YG T + RE + + R K H
Sbjct: 612 WDSIGITRSLTKKPVMTLPYGSTRLTCRESVIDYIVDLEEKEAQKAVAEGRTANKVHPFE 671
Query: 819 DDRQLF----AAACYAAKVTLTALGEIFEAARSIMGWLGDCAKVIASENQPVRWTTPLGL 874
DDRQ + AA Y + ++ E+ +A M + A+ A N+ + +T P G
Sbjct: 672 DDRQDYLTPGAAYNYMTALIWPSISEVVKAPIVAMKMIRQLARFAAKRNEGLMYTLPTGF 731
Query: 875 PVVQPYCKNERHLIRTSLQ---VLALQREGNLVKIRKQRTAFPPNFVHSLDGSHMMMTAV 931
+ Q E +RT L ++LQ E ++V A PNFVH D SH+++T
Sbjct: 732 ILEQKIMATEMLRVRTCLMGDIKMSLQVETDIVDEAAMMGAAAPNFVHGHDASHLILTVC 791
Query: 932 ACRDAGL 938
D G+
Sbjct: 792 ELVDKGV 798
>gi|133451|sp|P06221.1|RPOL_BPSP6 RecName: Full=DNA-directed RNA polymerase
gi|15463|emb|CAA68288.1| unnamed protein product [Shigella phage Sf6]
Length = 874
Score = 196 bits (499), Expect = 4e-47, Method: Compositional matrix adjust.
Identities = 196/787 (24%), Positives = 340/787 (43%), Gaps = 110/787 (13%)
Query: 224 FGPLSEAIEREQKMQRTKKQKAAYA-PHIELLPADKVAVIVMHKMMGLVMAGHEDRCVQV 282
P++E I+ ++ KK +A A ++ + + A I M +M ++ + D +Q
Sbjct: 50 IAPMAEGIQAYKEEYEGKKGRAPRALAFLQCVENEVAAYITMKVVMDML---NTDATLQA 106
Query: 283 VQAAVHIGMAIEQEIRIHSFLEKTKNY--KRKKIIADTEEVLSKEKELLRKRVNSLIKSK 340
+ A+ + IE ++R Y K KK + S+ K +++ K
Sbjct: 107 I--AMSVAERIEDQVRFSKLEGHAAKYFEKVKKSLK-----ASRTKSYRHAHNVAVVAEK 159
Query: 341 RVMEAQKLLKNEETKPWGRDTQAKLGSRLVELLIETAYVQHPVNPADYSPPDVRPAFRHR 400
V A+K + + W ++TQ ++G+ L+E+L + + P F
Sbjct: 160 SV--AEKDADFDRWEAWPKETQLQIGTTLLEILEGSVFYNG------------EPVFMRA 205
Query: 401 FKTILKHPGQKTTKRYGVVECDPLVLEGLDRSAKHMLIPYVPMLVPPKKWKGYNKGGYLF 460
+T G KT E + + Y P ++PP+ W+ GG+
Sbjct: 206 MRTY----GGKTIYYLQTSESVGQWISAFKEHVAQLSPAYAPCVIPPRPWRTPFNGGFHT 261
Query: 461 --LPSYVMRTHGSRKQQEALKSVTGNCMKKVFEALDTLGSTKWRVNKQVLSVLESIW--- 515
+ S + G+R E ++ +T M KV++A++ L +T+W++NK VL+V+E +
Sbjct: 262 EKVASRIRLVKGNR---EHVRKLTQKQMPKVYKAINALQNTQWQINKDVLAVIEEVIRLD 318
Query: 516 VSGG--NIAGLVDRNDVLIPEKPLS-----------EDMTEVQKWK----WSVRKAKKIN 558
+ G + L+D+ + P P+ ++M ++W+ W A+
Sbjct: 319 LGYGVPSFKPLIDKENK--PANPVPVEFQHLRGRELKEMLSPEQWQQFINWKGECARLYT 376
Query: 559 QE--RHSQRCDTELKLSVARRMKDEEGFYYPHNLDFRGRAYPMHPHLNHLSSDVCRGVLE 616
E R S+ + AR+ E Y+ + +D R R Y L+ S+D+ + +L
Sbjct: 377 AETKRGSKSAAVVRMVGQARKYSAFESIYFVYAMDSRSRVYVQSSTLSPQSNDLGKALLR 436
Query: 617 FAEGRPL-GKSGLRWLKIHLANLFSGGVEKLSHDGRLAFVENHLYEIF--DSAENPINGS 673
F EGRP+ G L+W I+ ANL+ G +K + D R++ V + ++ D A +P+ +
Sbjct: 437 FTEGRPVNGVEALKWFCINGANLW--GWDKKTFDVRVSNVLDEEFQDMCRDIAADPLTFT 494
Query: 674 RWWLTAEDPFQCLAACINLSEALK---SSSPHSVISHLPIHQDGSCNGLQHYAALGRNTL 730
+W A+ P++ LA C ++ L +HLP+HQDGSC+G+QHY+A+ R+ +
Sbjct: 495 QW-AKADAPYEFLAWCFEYAQYLDLVDEGRADEFRTHLPVHQDGSCSGIQHYSAMLRDEV 553
Query: 731 EAAAVNLVAGEKPADVYSEIAVRVHEIMKRDSNKDPSKHPQALLAKILID---------- 780
A AVNL + P D+Y +A V I K D + +
Sbjct: 554 GAKAVNLKPSDAPQDIYGAVAQVV--IKKNALYMDADDATTFTSGSVTLSGTELRAMASA 611
Query: 781 ----QVDRKLVKQTVMTSVYGVTFVGAREQI-----------------KRRLEEKGH-IT 818
+ R L K+ VMT YG T + RE + + R K H
Sbjct: 612 WDSIGITRSLTKKPVMTLPYGSTRLTCRESVIDYIVDLEEKEAQKAVAEGRTANKVHPFE 671
Query: 819 DDRQLF----AAACYAAKVTLTALGEIFEAARSIMGWLGDCAKVIASENQPVRWTTPLGL 874
DDRQ + AA Y + ++ E+ +A M + A+ A N+ + +T P G
Sbjct: 672 DDRQDYLTPGAAYNYMTALIWPSISEVVKAPIVAMKMIRQLARFAAKRNEGLMYTLPTGF 731
Query: 875 PVVQPYCKNERHLIRTSLQ---VLALQREGNLVKIRKQRTAFPPNFVHSLDGSHMMMTAV 931
+ Q E +RT L ++LQ E ++V A PNFVH D SH+++T
Sbjct: 732 ILEQKIMATEMLRVRTCLMGDIKMSLQVETDIVDEAAMMGAAAPNFVHGHDASHLILTVC 791
Query: 932 ACRDAGL 938
D G+
Sbjct: 792 ELVDKGV 798
>gi|431809442|ref|YP_007236337.1| DNA-directed RNA polymerase [Yersinia phage phi80-18]
gi|398313522|emb|CCI88870.1| DNA-directed RNA polymerase [Yersinia phage phi80-18]
Length = 817
Score = 196 bits (498), Expect = 5e-47, Method: Compositional matrix adjust.
Identities = 196/761 (25%), Positives = 334/761 (43%), Gaps = 95/761 (12%)
Query: 220 FLGWFGPLSEAIEREQKMQRTKKQKA-AYAPHIELLPADKVAVIVMHKMMGLVMAGHEDR 278
+L W LSE I + K +A AY+P + L D VA+I ++ ++G A D
Sbjct: 48 YLLW---LSERISTDITTDLGKAGRAKAYSPLLHSLDPDAVALITINTLLGSFQA--RDG 102
Query: 279 CVQVVQAAVHIGMAIEQEIRIHSFLEKTKNYKRKKIIADTEEVLSKEKELLRKRVNSLIK 338
+Q+ A IG + E+ + F + + + + +D ++ +S++ LR ++
Sbjct: 103 EIQLSTLAYSIGRNVYGELALAHFRDMKPDL-YETLTSDLQQKMSRD---LRHKLT---- 154
Query: 339 SKRVMEAQKLLKNEETKPWGRDTQAKLGSRLVELLIETAYVQHPVNPADYSPPDVRPAFR 398
+ Q N E W + ++G L+ L+ T+ H V + +
Sbjct: 155 ---IFRMQAKENNIELPEWTPSQKLQVGVYLLSLIDGTS--GHDVFLCNMN--------- 200
Query: 399 HRFKTILKHPGQKTTKRYGVVECDPLVLEGLDRSAKHMLIPYVPMLVPPKKWKGYNKGGY 458
L+ G KT + E ++ L+ S + P + PP+ W G + G
Sbjct: 201 ------LRQSGNKTKYMISLSENIQHIMGDLEYSLINKSGFAAPCIYPPQDWTGEDGVGG 254
Query: 459 LF--LPSYVMRTHGSRKQQEALKSVTGNCMKKVFEALDTLGSTKWRVNKQVLSVLESIWV 516
L +R Q + + G K L+ T W+VN +L+++ +
Sbjct: 255 FHGDLKIRAVRFFKGSSYQWEIMNTLGCDNTKTLAMLNAHQRTAWKVNPFILNLVTEMRK 314
Query: 517 SGGNIAGLVDRNDVLIPEKPL------SEDMT-----EVQKWKWSVR----KAKKINQER 561
G + P +P ++D T E +WK R K KK+
Sbjct: 315 RGRETKTVATLAAHKKPTRPDFLDLKDTKDFTHAEFKEFAQWKAETRDWHTKTKKVT--- 371
Query: 562 HSQRCDTELKLSV--ARRMKDEEGFYYPHNLDFRGRAYPMHPHLNHLSSDVCRGVLEFAE 619
R + L L+V A+ M + F++ + +D R RAYP+ LN SDV + +L A
Sbjct: 372 ---RVELRLHLAVEAAKEMLGYDEFFFVYQVDSRVRAYPVSGPLNPQGSDVQKALLHAAH 428
Query: 620 GRPLGK-SGLRWLKIHLANLFSGGVEKLSHDGRLAFVENHLYEIFDSAENPIN--GSRWW 676
G P+ L W K+ +A+ F G++KL+ + +V+++ I + +P + WW
Sbjct: 429 GEPIDTPEALYWFKLTIASKF--GIDKLAPLECIKWVDDNHDNILKAVCDPCDRDAYLWW 486
Query: 677 LTAEDPFQCLAACINLSEALKSSSPHSVISHLPIHQDGSCNGLQHYAALGRNTLEAAAVN 736
A+ P Q +A C S +K ++ S + DG+CNGLQ+Y+A+ R+ + A N
Sbjct: 487 SAADKPMQFIALCDEYSRFIKDTA--GFRSRIAAAMDGTCNGLQNYSAMLRDEVGGRATN 544
Query: 737 LV--AGEKPADVYSEIAV----RVHEIMKRDSNKDPSKHPQALLAKILIDQVDRKLVKQT 790
L+ A P D+Y ++A R+ ++ D +H +R L K++
Sbjct: 545 LISDASGVPNDIYGDVAKASYKRLCSMVVSDERLAWQEH-----------GFNRSLTKKS 593
Query: 791 VMTSVYGVTFVGAREQIKRRLEEKGHITDDRQLFAAACYAAKVTLTALGEIFEAARSIMG 850
VMT VYG TF R+ + ++K + + F + YAA++ +G++ A+ M
Sbjct: 594 VMTQVYGSTFGTCRKSVIEYCQDKDLFLKELR-FGYSDYAARLIWDGIGDVVVKAKEAMD 652
Query: 851 WLGDCAKVIASEN-QPVRWTTPLGLPVVQPYCKNERHLIRTSL-QVLALQREGNLVKI-- 906
WL A +I E + + W TP G VVQ Y K E ++ + Q +AL+ + I
Sbjct: 653 WLRKSAGLIMKEGAEYISWPTPTGYRVVQIYDKCEMIRVQAHIGQKIALKVHNHDKPIGP 712
Query: 907 --RKQRTAFPPNFVHSLDGSHMMMTAV-----ACRDAGLHF 940
+ R AFPPNF+HS+DGSHM +T + R +HF
Sbjct: 713 DKMRHRNAFPPNFIHSVDGSHMGLTTIDIEEKCGRGTFMHF 753
>gi|398313069|emb|CCI88420.1| mitochondrial single-subunit RNA polymerase [Yersinia phage
phiR8-01]
Length = 810
Score = 195 bits (496), Expect = 9e-47, Method: Compositional matrix adjust.
Identities = 203/801 (25%), Positives = 361/801 (45%), Gaps = 116/801 (14%)
Query: 189 AWE---RMVDEYKELEA--KMIEKRLAPNLPHIKGLFLGWFGPLSEAIEREQKMQRTKKQ 243
AWE R + K +E+ K E+ + P G+ + LS+ I + + K
Sbjct: 9 AWEHKHRELGRDKVMESLRKAEEQGRVTDTPLGTGVLRKYIMWLSQRIATDLTVDLGKPG 68
Query: 244 KA-AYAPHIELLPADKVAVIVMHKMMGLVMAGHEDRCVQVVQAAVHIGMAIEQEIRIHSF 302
++ A++P ++ L D VA+I + ++ + ++R + V A+ IG I E+ + F
Sbjct: 69 RSKAHSPLLKDLDPDSVALITISSVINTL--SQDNRGLSAV--AMQIGKTIYGELALCYF 124
Query: 303 LEKTKNYKRKKIIADTEEVLSKEKELLRKRVNSLIKSKRVMEAQKLLKNEETKPWGRDTQ 362
+ ++ + ++ D + +SK+ LR R+ VM Q W +
Sbjct: 125 RDMKEDL-YEAMVHDLTKKMSKD---LRHRLT-------VMRMQAEKAGVSIPEWTPSQK 173
Query: 363 AKLGSRLVELLI-ETAYVQHPVNPADYSPPDVRPAFRHRFKTILKHPGQKTTKRYGVVEC 421
++G L+ L+ E V+ + +KTT + ++
Sbjct: 174 LQVGLYLLSLIDGEDGLVEQYTD----------------------FTNKKTTYK---LQL 208
Query: 422 DPLVLEGLDRSAKHMLIPYV----PMLVPPKKWKGYNKGGY-----LFLPSYVMRTHGSR 472
P V++ L SA+ ++ + P L+ P+ W G GG+ + P + G
Sbjct: 209 RPAVMQ-LMNSAESSILAHAGFAAPCLIQPQDWDGDGVGGFYGDLKIRAPRFF---KGDS 264
Query: 473 KQQEALKSVTGNCMKKVFEALDTLGSTKWRVNKQVLSVLESIWVSGGNIAGLVDRNDVLI 532
Q E +K + G ++ V L+ S W+VN +L +++ + + G + +DV+
Sbjct: 265 YQMEVMKKL-GCDLRVVLGMLNAHQSVAWKVNPFILDLVKGMRLRG------YETDDVMF 317
Query: 533 ------PEKPLSEDMT---------EVQKWKWSVRKAKKINQERHSQRCDTELK--LSVA 575
P +PL D+ EV+ +W K + R R + +L + A
Sbjct: 318 TSAHPEPPRPLFLDLADKIGMTVPQEVEFKQWKQTKRDWHTKIRLVSRAEAKLSRVIYAA 377
Query: 576 RRMKDEEGFYYPHNLDFRGRAYPMHPHLNHLSSDVCRGVLEFAEGRPLG-KSGLRWLKIH 634
+ M + F++ D RGR YP+ LN SD+ + +L A G P+ K +W K++
Sbjct: 378 QDMLEYSEFFFVFQTDDRGRMYPVSGPLNPQGSDMQKAMLHAAHGEPIADKVAEKWFKLN 437
Query: 635 LANLFSGGVEKLSHDGRLAFVENHLYEIFDSAENPIN--GSRWWLTAEDPFQCLAACINL 692
LA + GV+KL+ D + + ++ I +AE+P+N WW A+ P Q +A C
Sbjct: 438 LATKY--GVDKLNIDQCVQWTIDNHDNIMRAAEDPLNRDAFYWWSEADKPLQFIALCDEY 495
Query: 693 SEALKSSSPHSVISHLPIHQDGSCNGLQHYAALGRNTLEAAAVNLVA--GEKPADVYSEI 750
P + ++ + + DG+CNGLQ+Y+AL R+ + A NL+ G+ P D+Y ++
Sbjct: 496 RRY--HLDPVNFVARIAVAMDGTCNGLQNYSALLRDEVGGRATNLIGEDGDAPNDIYGDV 553
Query: 751 AVRVHEIMKRDSNKDPSKHPQALLAKI--LIDQVDRKLVKQTVMTSVYGVTFVGAREQIK 808
AV + + ++ + AK+ L + +R L K++VMT VYG TF R+ I
Sbjct: 554 AVAAEKRL---------QYAEECAAKLAWLKEGFNRGLTKKSVMTQVYGSTFGTCRKSIV 604
Query: 809 RRLEEKGHITDDRQLFAAACYAAKVTLTALGEIFEAARSIMGWL---GDCAKVIASENQP 865
EK + +D++ + A +A+ + +G++ + M WL CA + + +
Sbjct: 605 AYCVEKA-LFEDKERWEFADFASHLVWEGIGDVVVKGKEAMDWLRKVSGCA--MKTGDDY 661
Query: 866 VRWTTPLGLPVVQPYCKNERHLIRTSLQ---VLALQREGNLVKIRKQRTAFPPNFVHSLD 922
+ W P G VVQ Y K+E ++ + L L+ E +L + R A PPNF+HS+D
Sbjct: 662 ISWPAPSGFRVVQVYRKSEVKRVQAQVGNKITLRLREETDLPDKIRHRNATPPNFIHSVD 721
Query: 923 GSHMMMTAVACRDAGLHFAGL 943
SHM +V L F GL
Sbjct: 722 ASHMAFVSVRMY---LMFPGL 739
>gi|282554612|ref|YP_003347629.1| DNA-dependent RNA polymerase [Klebsiella phage KP34]
gi|262410445|gb|ACY66709.1| DNA-dependent RNA polymerase [Klebsiella phage KP34]
Length = 822
Score = 195 bits (495), Expect = 1e-46, Method: Compositional matrix adjust.
Identities = 156/525 (29%), Positives = 251/525 (47%), Gaps = 49/525 (9%)
Query: 442 PMLVPPKKWKGYNKGGYL--------FLPSYVMRTHGSRKQQEALKSVTGNCMKKVFEAL 493
PMLVPP + GGYL + S++ RT R+ EA KS G + +AL
Sbjct: 244 PMLVPPVQHTTMWDGGYLTPIDNRGTYHNSHIDRTR-LREVAEAFKSADG-----IKKAL 297
Query: 494 DTLGSTKWRVNKQVLSVLESIWVSGGNIAGLVDRN----------DVLIPEKPLSEDMTE 543
+ T +R+NK++L +++ G + + R+ D + E E++
Sbjct: 298 NKAQETPYRINKRILELVQEARALGIGVG--MPRSVPEPKPEWYLDGVPKENYTEEELDR 355
Query: 544 VQKWKWSVRKAKKINQERHSQRCDTELKLSVARRMKDEEGFYYPHNLDFRGRAY---PMH 600
+WK + +++R SQ L +A KDE+ Y+P +D+R R Y +H
Sbjct: 356 FGEWKTRMSLWYSADRKRVSQLRSLLTTLEMAEEFKDEKALYFPTCVDWRYRLYFKSSLH 415
Query: 601 PHLNHLSSDVCRGVLEFAEGRPLGKSGLRWLKIHLANLFSGGVEKLSHDGRLAFVENHLY 660
P SD+ + +LEF G+PLG GL WLK+H+A F G +K + R A+V+ +
Sbjct: 416 PQ----GSDLQKALLEFGRGKPLGDRGLFWLKVHVATCF--GYDKTLFEDRAAWVDANFA 469
Query: 661 EIFDSAENPINGSRWWLTAEDPFQCLAACINLSEALKSSSPHSVISHLPIHQDGSCNGLQ 720
EI +P + + +A+ P+ LAA I+L A++S P IS +P+ D + +G Q
Sbjct: 470 EIEQLTVSPFDCPA-FTSADSPWCLLAAAIDLVNAVRSGCPEEHISRIPVAMDATNSGGQ 528
Query: 721 HYAALGRNTLEAAAVNLV--AGEKPADVYSEIAVRVHEIMKRDSNKDPSKHPQALLAKIL 778
H +AL R+ + NL +K AD+Y ++ R E + D +K+ +
Sbjct: 529 HLSALLRDPVGGRLTNLYWEGNDKKADLYMDVKRRTDEKVILDLDKEDFIIQSTYWRE-- 586
Query: 779 IDQVDRKLVKQTVMTSVYGVTFVGAREQIKRRLEEKGH-ITDDRQLFAAACYAAKVTLTA 837
+++ R + K+ MT Y T + I +G+ TD L+ +CY A A
Sbjct: 587 -NEITRSMTKRPSMTYFYSATVRSCSDYIFEGACAEGYEGTDTNSLWNLSCYLAPRMRAA 645
Query: 838 LGEIFEAARSIMGWLGDCAKVIASENQPVRWTTPLGLPVVQPYCKNERHLIRTSLQ---- 893
+ E AA ++MG+L + A+ + + +Q ++W TPLG V+ Y + E +R
Sbjct: 646 IEEANPAAAAVMGYLQNLARRVPA-SQHLQWYTPLGGLVMNRYTQREEVRVRIDCMNLSA 704
Query: 894 VLALQREGNLVKIRKQRTAFPPNFVHSLDGSHMMMTAVACRDAGL 938
VL R+ RK + PNFVHSLD +H+MM V C GL
Sbjct: 705 VLVHNRDFKTCNKRKAASGIAPNFVHSLDSTHLMM--VLCAAEGL 747
>gi|89148148|gb|ABD62817.1| mitochondrial single-subunit RNA polymerase [Rosculus sp. ATCC
50888]
Length = 1285
Score = 193 bits (491), Expect = 3e-46, Method: Compositional matrix adjust.
Identities = 156/636 (24%), Positives = 271/636 (42%), Gaps = 162/636 (25%)
Query: 182 QVKQETEAWERMVDEYKELEAKMIEKRLAPNLPHIKGLFLGWFGPLSEAIERE------- 234
Q+ E + + VDEY EL +M + A +L ++ L WF PL+E+IE+E
Sbjct: 109 QLNLEHTSITKAVDEYTELTEQMTKMGRASHLSPLQDHVLRWFKPLAESIEKEILDCRAK 168
Query: 235 --------------------------QKMQRTKKQKAAYA----------PHIELLPADK 258
K T +Q+ + P+I L +
Sbjct: 169 LAVLANNSGDGSSTNNDEDDNGDNEPTKGGNTAQQRQQLSAQLNDLKLILPYINQLKPTE 228
Query: 259 VAVIVMHKMMGLVMAGHEDRCVQVVQAAVHIGMAIEQEIRIHSFLEKTKNYKRKKIIADT 318
+ I +H+ + ++ ++V+ ++ IG + E + N++R +
Sbjct: 229 LGCIALHETLSRILNA--PNGMRVIDLSISIGRVVNTEANFLQLRQDRANFQRLRRYYPG 286
Query: 319 EEVLSKEKELLRKRVNS--------------------------LIKSKRVMEAQKLLK-- 350
++ ++++R+ VN+ + R + Q+L
Sbjct: 287 AKL---NEQVIRRAVNNQSKNNNDKDGDNNTSNNSNNQQMPNNMSTFNRYKDNQQLKSIG 343
Query: 351 ------------NEETKPWGRDTQAKLGSRLVELLIE--------TAYVQHPVNPADYSP 390
N E W QAK+GS L++ +++ T + H + +
Sbjct: 344 PNQPSDQYGYALNSENATWSDLVQAKVGSFLIKHMLQHHQLSKKLTQSLVHFTSVENQHQ 403
Query: 391 PDVR------------PAFRHRFKTILKHPGQKTTKRYGVVECDPLVLEGLDRSAKHMLI 438
P + PAF + +++ H T + V VL + +
Sbjct: 404 PRLPTSANSTIQQIEVPAFTYEHRSVGNHYVGYITCHHDVRN----VLNSAHTDVSTLAV 459
Query: 439 PYVPMLVPPKKWKGYNKGGYLFLPSYVMRTHGSRKQQEALKSVTGNCMKKVFEALDTLGS 498
+PM++PP+ W+ GGYL +PS ++R+ GSRKQ +A V + +K V E+L+ LG
Sbjct: 460 RLLPMVIPPRPWRSVRDGGYLSVPSSIIRSKGSRKQIDA---VVASDIKTVQESLNYLGR 516
Query: 499 TKWRVNKQVLSVLESIWVSGGNIAGLVDRNDVLIPEKPL--------------------- 537
W +N VLSV++ W GG +A + R D+ +P++P+
Sbjct: 517 VAWSINNHVLSVIDQAWDEGGGLASMPTRRDIPLPQQPVLNLLQYDEKKNRYFAPSAATI 576
Query: 538 -----SEDMTEVQKWKWSV---------------RKAKKINQ---ERHSQRCDTELKLSV 574
+E + + S R ++I+Q + HS RCD L+L+
Sbjct: 577 KAMTKNEGDVDTSDGQLSTSDQLVQQTQQWRQYQRDMQRISQHNADLHSLRCDLSLRLNQ 636
Query: 575 ARRMKDEEGFYYPHNLDFRGRAYPMHPHLNHLSSDVCRGVLEFAEGRPLGKSGLRWLKIH 634
A+++ Y+P N+DFRGRAYP+ PHLNHL SD+ R +L F +PLG+ GL WL+ H
Sbjct: 637 AKQLTGNP-VYFPLNMDFRGRAYPIPPHLNHLGSDLARALLLFHHKKPLGEKGLYWLQAH 695
Query: 635 LANLFSGGVEKLSHDGRLAFVENHLYEIFDSAENPI 670
LA F GV+K+S D R+ ++E H++ + D+A+ P+
Sbjct: 696 LAAQF--GVDKVSFDDRVKYIEQHMHLVRDTAKRPM 729
Score = 141 bits (356), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 71/152 (46%), Positives = 101/152 (66%), Gaps = 12/152 (7%)
Query: 669 PINGSR-------WWLTAEDPFQCLAACINLSEALKSSSPHSVISHLPIHQDGSCNGLQH 721
P++G R WW A++P+Q L+ C + A+ S +P + + LP+HQDGSCNGLQH
Sbjct: 809 PLDGERDVRAKLPWWQLADNPWQALSTCHEIINAIDSGNPATYETGLPVHQDGSCNGLQH 868
Query: 722 YAALGRNTLEAAAVNLVAGEKPADVYSEIAVRVHEIMKRDSNKDPSKHPQALLAKILIDQ 781
YAALGR+ + VNL +KP DVYS + V M++D + + +P LAK+L+
Sbjct: 869 YAALGRDYQGGSRVNLTKSDKPQDVYSHVLNEVKRRMEQDIKE--TNNP---LAKMLLPH 923
Query: 782 VDRKLVKQTVMTSVYGVTFVGAREQIKRRLEE 813
+ RK+VKQTVMTSVYGVTF+GAR+QI ++L +
Sbjct: 924 MARKVVKQTVMTSVYGVTFIGARDQILKQLRD 955
Score = 122 bits (305), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 54/121 (44%), Positives = 80/121 (66%), Gaps = 2/121 (1%)
Query: 825 AAACYAAKVTLTALGEIFEAARSIMGWLGDCAKVIASENQPVRWTTPLGLPVVQPYCKNE 884
A++ Y A++TLT+LG +F AA IM WL +CA +I+ + QPV W TP+ LPVVQ Y
Sbjct: 1096 ASSIYLARLTLTSLGTVFSAATRIMSWLTECAGIISKQEQPVSWITPMQLPVVQHYRMIS 1155
Query: 885 RHLIRTSLQVLALQREGNLVKI--RKQRTAFPPNFVHSLDGSHMMMTAVACRDAGLHFAG 942
+ ++T Q + L + + + + ++QR AFPPNFVHSLD +HMM+TA C G+ F+
Sbjct: 1156 KFQVKTLNQTVTLHHDNDTLPVSPQRQRAAFPPNFVHSLDATHMMLTATQCAHHGIVFSS 1215
Query: 943 L 943
+
Sbjct: 1216 V 1216
>gi|456351031|ref|YP_007500985.1| RNA polymerase [Enterobacteria phage UAB_Phi78]
gi|322227505|gb|ADW95214.1| RNA polymerase [Enterobacteria phage UAB_Phi78]
Length = 874
Score = 193 bits (490), Expect = 4e-46, Method: Compositional matrix adjust.
Identities = 195/787 (24%), Positives = 338/787 (42%), Gaps = 110/787 (13%)
Query: 224 FGPLSEAIEREQKMQRTKKQKAAYA-PHIELLPADKVAVIVMHKMMGLVMAGHEDRCVQV 282
P++E I+ ++ KK +A A ++ + + A I M +M ++ + D +Q
Sbjct: 50 IAPMAEGIQAYKEEYEGKKGRAPRALAFLQCVENEVAAYITMKVVMDML---NTDVTLQA 106
Query: 283 VQAAVHIGMAIEQEIRIHSFLEKTKNY--KRKKIIADTEEVLSKEKELLRKRVNSLIKSK 340
+ A+ + IE ++R Y K KK + S+ K +++ K
Sbjct: 107 I--AMSVAERIEDQVRFSKLEGHAAKYFEKVKKSLK-----ASRTKSYRHAHNVAVVAEK 159
Query: 341 RVMEAQKLLKNEETKPWGRDTQAKLGSRLVELLIETAYVQHPVNPADYSPPDVRPAFRHR 400
V A+K + + W ++ Q ++G+ L+E+L + + P F
Sbjct: 160 SV--AEKDADFDRWEAWPKEAQLQIGTTLLEILEGSVFYNG------------EPVFMRA 205
Query: 401 FKTILKHPGQKTTKRYGVVECDPLVLEGLDRSAKHMLIPYVPMLVPPKKWKGYNKGGYLF 460
+T G KT E + + Y P +VPP+ WK GG+
Sbjct: 206 MRTY----GGKTIYYLQTSESVGQWISAFKEHVAQLSPAYAPCVVPPRPWKTPFNGGFHT 261
Query: 461 --LPSYVMRTHGSRKQQEALKSVTGNCMKKVFEALDTLGSTKWRVNKQVLSVLESIW--- 515
+ S + G+R E ++ +T M KV++A++ L +T+W++NK VL+V+E +
Sbjct: 262 EKVASRIRLVKGNR---EHVRKLTQKQMPKVYKAINALQNTQWQINKDVLAVIEEVIRLD 318
Query: 516 VSGG--NIAGLVDRNDVLIPEKPLS-----------EDMTEVQKWK----WSVRKAKKIN 558
+ G + L+D+ + P P+ ++M ++W+ W A+
Sbjct: 319 LGYGVPSFKPLIDKENK--PANPVPVEFQHLRGRELKEMLSPEQWQQFINWKGECARLYT 376
Query: 559 QE--RHSQRCDTELKLSVARRMKDEEGFYYPHNLDFRGRAYPMHPHLNHLSSDVCRGVLE 616
E R S+ + AR+ E Y+ + +D R R Y L+ S+D+ + +L
Sbjct: 377 AETKRGSKSAAVVRMVGQARKYSTFESIYFVYAMDSRSRVYAQSSTLSPQSNDLGKALLR 436
Query: 617 FAEGRPLGK-SGLRWLKIHLANLFSGGVEKLSHDGRLAFVENHLYEIF--DSAENPINGS 673
F EGRP+ L+W ++ ANL+ G +K D R++ V + ++ D A +P+ +
Sbjct: 437 FTEGRPVDSVEALKWFCVNGANLW--GWDKKIFDVRVSNVLDEEFQDMCRDIAADPLTFT 494
Query: 674 RWWLTAEDPFQCLAACINLSEAL---KSSSPHSVISHLPIHQDGSCNGLQHYAALGRNTL 730
+W A+ P++ LA C ++ L + +HLP+HQDGSC+G+QHY+A+ R+ +
Sbjct: 495 QW-AKADAPYEFLAWCFEYAQYLDLVEEGRADEFRTHLPVHQDGSCSGIQHYSAMLRDEV 553
Query: 731 EAAAVNLVAGEKPADVYSEIAVRVHEIMKRDSNKDPSKHPQALLAKILID---------- 780
A AVNL + P D+Y +A V I K D + +
Sbjct: 554 GAKAVNLKPSDTPQDIYGAVAQVV--IKKNALYMDADDATTFTSGSVTLSGAELRAMASA 611
Query: 781 ----QVDRKLVKQTVMTSVYGVTFVGAREQI-----------------KRRLEEKGH-IT 818
+ R L K+ VMT YG T + RE + + R K H
Sbjct: 612 WDSIGITRSLTKKPVMTLPYGSTRLTCRESVIDYIVDLEEKEAQKAVAEGRTANKVHPFE 671
Query: 819 DDRQLF----AAACYAAKVTLTALGEIFEAARSIMGWLGDCAKVIASENQPVRWTTPLGL 874
DDRQ + AA Y + ++ E+ +A M + A+ A N+ + +T P G
Sbjct: 672 DDRQDYLTPGAAYNYMTALIWPSISEVVKAPIVAMKMIRQLARFAAKRNEGLMYTLPTGF 731
Query: 875 PVVQPYCKNERHLIRTSLQ---VLALQREGNLVKIRKQRTAFPPNFVHSLDGSHMMMTAV 931
+ Q E +RT L ++LQ E ++V A PNFVH D SH+++T
Sbjct: 732 ILEQKIMATEMLRVRTCLMGDIKMSLQVETDIVDEAAMMGAAAPNFVHGHDASHLILTVC 791
Query: 932 ACRDAGL 938
D G+
Sbjct: 792 ELVDKGV 798
>gi|148727210|ref|YP_001285702.1| p32 [Xanthomonas phage Xop411]
gi|116583510|gb|ABK00180.1| p32 [Xanthomonas phage Xop411]
Length = 746
Score = 190 bits (483), Expect = 3e-45, Method: Compositional matrix adjust.
Identities = 145/529 (27%), Positives = 252/529 (47%), Gaps = 54/529 (10%)
Query: 422 DPLVLEGLDRSAKHMLIPYVPMLVPPKKWKGYNKGGYLFLPSYVMRTHGSRKQQEALKSV 481
D + + ++R+A Y+P + P W Y+ GG+ + + + + + +++
Sbjct: 190 DDITTKTIERAAY-----YLPCVEQPMPWTSYSNGGWHTAEMRRLMPYLIKGKGDYHRAL 244
Query: 482 TGNCMKKVFEALDTLGSTKWRVNKQVLSVLESIWVSGGNIAGLVDRNDVL-IPEKPLSED 540
+ + ++ L T WRVN ++L L+ IAG + ++++ +P+
Sbjct: 245 QAADLSQELACINALQRTAWRVNSRMLDALD-------QIAGKISIDEIVAVPD------ 291
Query: 541 MTEVQKWKWSVRKAKKINQERHSQRCDTELKLSVARRMKDEEGFYYPHNLDFRGRAYPMH 600
+ +W +++ + + R+ Q SVA + Y+ + DFRGR Y M
Sbjct: 292 -ADAPRW---LKEEHRKTRNRYKQVS------SVANKFLAYPAIYFVYFCDFRGRKYAMG 341
Query: 601 PHLNHLSSDVCRGVLEFAEGRPL-GKSGLRWLKIHLANLFSGGVEKLSHDGRLAFVENHL 659
+N SD+ + +LEFA+G PL + + W I AN + G +K S R+ + ++
Sbjct: 342 SGINPQGSDLQKCLLEFAKGMPLKDQHAVDWFMITGANRY--GFDKCSLADRVQWCHDNH 399
Query: 660 YEIFDSAENPINGSRWWLTAEDPFQCLAACINLSEALKSSSPHSVISHLPIHQDGSCNGL 719
EI AE+P+ G +W A P Q LA C+ + ++ + +S + DG+CNGL
Sbjct: 400 NEIIACAEDPLTG-LFWKGASKPLQFLAWCLEYRDFIEQGP--AFVSRVSADMDGTCNGL 456
Query: 720 QHYAALGRNTLEAAAVNLVAGEKPADVYSEIAVRVHEIMKRDSNKDPSKHPQALLAKILI 779
QH++A+ R+ + AA NL+ + P+D+Y+ +A R +++ K L+ K L
Sbjct: 457 QHFSAMLRDEVGGAATNLLPADLPSDIYAIVAKRTQVRLEQ-----AEKDEDGLIDKWLS 511
Query: 780 DQVDRKLVKQTVMTSVYGVTFVGAREQIKRRLEEKGHITDDRQLFAAACY--AAKVTLT- 836
++R + K++ MT YG T + ++ KG + F AA + AA++ T
Sbjct: 512 HGINRSVTKRSTMTLPYGSTRFSSAGFVRDDYLRKGKAPE----FDAALHNKAAQLLSTF 567
Query: 837 ---ALGEIFEAARSIMGWLGDCAKVIASENQP-VRWTTPLGLPVVQPYCKNERHLIRTSL 892
A+GE AR M WL AK + P + WTTP G PV Q Y + +RT +
Sbjct: 568 IWPAIGETVVKAREGMDWLQTAAKQAIKQGAPALSWTTPTGFPVWQVYNQVVVKKVRTKM 627
Query: 893 QVLALQR---EGNLVKIRKQRTAFPPNFVHSLDGSHMMMTAVACRDAGL 938
A R G++ +K PNFVHS+D +H+ T AC +AG+
Sbjct: 628 AGSAQIRVYVPGDVPDAKKHAAGAAPNFVHSMDAAHLTATVNACAEAGI 676
>gi|281306683|ref|YP_003345489.1| predicted phage RNA Polymerase [Pseudomonas phage phi-2]
gi|271277988|emb|CBH51594.1| predicted phage RNA Polymerase [Pseudomonas phage phi-2]
Length = 814
Score = 187 bits (476), Expect = 2e-44, Method: Compositional matrix adjust.
Identities = 146/519 (28%), Positives = 239/519 (46%), Gaps = 51/519 (9%)
Query: 443 MLVPPKKWKGYNKGGY------LFLPSYVMRTHGSRKQQ---EALKSVTGNCMKKVFEAL 493
M+ PP +W GG+ L P ++R G + + E K+++ M FE +
Sbjct: 237 MISPPLRWDRIVGGGFHTEKRQLKFP--LIRVGGRIRHKHIREYRKAMSAETMPNFFEPI 294
Query: 494 DTLGSTKWRVNKQVLSVLESIWVSGGNIAGLVDRNDVLIPEKPLSE----------DMTE 543
+ L S + +++ + +++IW GG + + + + P P +E DM
Sbjct: 295 NYLQSIPYSMSEDMYDTVKNIWQEGGGVLKVPKKAPPVKPVFPHAEGWNKEGASEADMEV 354
Query: 544 VQKWK-----W--SVRKAKKINQERHSQRCDTELKLSVARRMKDEEGFYYPHNLDFRGRA 596
+WK W +R+ K + E HS + M + + D RGR
Sbjct: 355 FNRWKRQTFNWHNDLREHKSMAWEMHS--------FNKVVGMARGKPVWNAMFADTRGRL 406
Query: 597 YPMHPHLNHLSSDVCRGVLEFAEGRPLGKSGLRWLKIHLANLFSGGVEKLSHDGRLAFVE 656
Y + SD + V+ FA +PLG G+ WLK+H+AN F G +K R A+ +
Sbjct: 407 Y-YRGACSPQGSDATKAVVHFARKKPLGHRGVYWLKVHIANCF--GFDKKKFKERAAWTD 463
Query: 657 NHLYEIFDSAENPINGSRWWLTAEDPFQCLAACINLSEALKSSSPHSVISHLPIHQDGSC 716
H + +P N + + P +AA L+ A S +P + S + +H D +C
Sbjct: 464 QHWEHLLHGVTDPSNSDVYRANNDAPLMAVAAVRELAAAYASGNPETFESGIIVHMDATC 523
Query: 717 NGLQHYAALGRNTLEAAAVNLV-AGEKPADVYSEIAVRVHEIMKRDSNKDPSKHPQALLA 775
+GLQH +A+ R+ + VNLV G++ AD+Y+ +A ++RD+ H +L
Sbjct: 524 SGLQHLSAMLRDPVGGRYVNLVPGGDEKADIYARVAHLAMMQIERDAE---GGHACGMLW 580
Query: 776 KILIDQVDRKLVKQTVMTSVYGVTFVGAREQIKRRLEEKGHITDDRQL-FAAAC-YAAKV 833
+ L V RKL K VMT VYG T + I L+E+G+ D + F C Y AK+
Sbjct: 581 QAL--GVSRKLAKGPVMTYVYGATLRSVADGIGDFLDEQGYSAKDTGVPFMKMCMYLAKL 638
Query: 834 TLTALGEIFEAARSIMGWLGDCAKVIASENQPVRWTTPLGLPVVQPYCKNERHLIRT--- 890
A+ + AA ++M WL D + QPV +TTP GL V Y E+ +R
Sbjct: 639 LFKAIEDTVPAAAALMRWLKDVVR-HHDRTQPVVFTTPHGLRVHHDYPDEEQTRVRVRSC 697
Query: 891 SLQVLALQREGNLVKIRKQRTAFPPNFVHSLDGSHMMMT 929
++ + + ++ K + + A PNFVH++D H+ MT
Sbjct: 698 GVEYVVMYQQLETSKTTRMQNAIAPNFVHAMDACHLSMT 736
>gi|71654288|ref|XP_815767.1| mitochondrial DNA-directed RNA polymerase [Trypanosoma cruzi strain
CL Brener]
gi|70880845|gb|EAN93916.1| mitochondrial DNA-directed RNA polymerase, putative [Trypanosoma
cruzi]
Length = 1022
Score = 186 bits (473), Expect = 4e-44, Method: Compositional matrix adjust.
Identities = 92/207 (44%), Positives = 130/207 (62%), Gaps = 3/207 (1%)
Query: 560 ERHSQRCDTELKLSVARRMKDEEGFYYPHNLDFRGRAYPMHPHLNHLSSDVCRGVLEFAE 619
E+ S R L AR + Y+P+++DFRGR YP+ LNH SD R +LE+AE
Sbjct: 812 EQRSNRIHYLQALRQARSLVQFSHIYFPNSMDFRGRMYPLPGRLNHTGSDPFRALLEYAE 871
Query: 620 GRPLGKSGLRWLKIHLANLFSGGVEKLSHDGRLAFVENHLYEIFDSAENPINGSRWWLTA 679
+PLG++GL WLK+HLAN G+ KLS D R+ +V H+ ++ SAE+P++G +WW A
Sbjct: 872 PKPLGETGLYWLKVHLANKM--GMSKLSFDERVHYVNEHIEDVVRSAESPLHGDKWWQEA 929
Query: 680 EDPFQCLAACINLSEALK-SSSPHSVISHLPIHQDGSCNGLQHYAALGRNTLEAAAVNLV 738
+P QCL AC L++ALK S + +S +P+ DGS NGLQHY+A+GR+ A VNLV
Sbjct: 930 AEPMQCLMACKELTDALKCSQGAENYLSRIPVAVDGSYNGLQHYSAIGRDAFGAQLVNLV 989
Query: 739 AGEKPADVYSEIAVRVHEIMKRDSNKD 765
E+PAD Y+ I + + D+ KD
Sbjct: 990 PSERPADAYTGILKEMMRSIMADAEKD 1016
>gi|108862033|ref|YP_654105.1| putative RNA polymerase [Enterobacteria phage K1-5]
gi|19338936|gb|AAL86891.1|AF478466_1 putative RNA polymerase [Enterobacteria phage K1-5]
Length = 875
Score = 186 bits (471), Expect = 6e-44, Method: Compositional matrix adjust.
Identities = 219/864 (25%), Positives = 366/864 (42%), Gaps = 145/864 (16%)
Query: 155 LKGLYKRIKLQEYREMKK---RKFNLLRRRQVKQETE---AWERMVDEYKELEAKMIEKR 208
++GL+ I+LQ EM R+F ++RQ+ E AW R R
Sbjct: 1 MQGLHA-IQLQLEEEMFNGGIRRFEADQQRQIASGNESDTAWNR---------------R 44
Query: 209 LAPNLPHIKGLFLGWFGPLSEAIEREQKMQRTKKQKAAYA-PHIELLPADKVAVIVMHKM 267
L L P++E I+ ++ K+ +A A I + + A I M +
Sbjct: 45 LLSEL----------IAPMAEGIQAYKEEYEGKRGRAPRALAFINCVENEVAAYITMKIV 94
Query: 268 MGLVMAGHEDRCVQVVQAAVHIGMAIEQEIRIHSFLEKTKNY--KRKKIIADTEEVLSKE 325
M ++ + D +Q + A+++ IE ++R Y K KK + SK
Sbjct: 95 MDML---NTDVTLQAI--AMNVADRIEDQVRFSKLEGHAAKYFEKVKKSLK-----ASKT 144
Query: 326 KELLRKRVNSLIKSKRVMEAQKLLKNEETKPWGRDTQAKLGSRLVELLIETAYVQ-HPVN 384
K +++ K V + E W +DT ++G L+E+L + + PV
Sbjct: 145 KSYRHAHNVAVVAEKSVADRDADFSRWEA--WPKDTLLQIGMTLLEILENSVFFNGQPV- 201
Query: 385 PADYSPPDVRPAFRHRFKTILKHPGQKTTKRYGVVECDPLVLEGLDRSAKHM--LIP-YV 441
F L+ G K Y ++ V E + +H+ L P Y
Sbjct: 202 ----------------FLRTLRTNGGKHGVYY--LQTSEHVGEWITAFKEHVAQLSPAYA 243
Query: 442 PMLVPPKKWKGYNKGGYLF--LPSYVMRTHGSRKQQEALKSVTGNCMKKVFEALDTLGST 499
P ++PP+ W GG+ + S + G+R E ++ +T M +V++A++ L +T
Sbjct: 244 PCVIPPRPWVSPFNGGFHTEKVASRIRLVKGNR---EHVRKLTKKQMPEVYKAVNALQAT 300
Query: 500 KWRVNKQVLSVLESIW---VSGG--NIAGLVDRNDVLIPEKP------------LSEDMT 542
KW+VNK+VL V+E + + G + L+DR + P P L E +T
Sbjct: 301 KWQVNKEVLQVVEDVIRLDLGYGVPSFKPLIDRENK--PANPVPLEFQHLRGRELKEMLT 358
Query: 543 EVQ-----KWKWSVRKAKKINQERHSQRCDTELKLSVARRMKDEEGFYYPHNLDFRGRAY 597
Q WK K +R S+ T + AR+ + Y+ + LD R R Y
Sbjct: 359 PEQWQAFINWKGECTKLYTAETKRGSKSAATVRMVGQARKYSQFDAIYFVYALDSRSRVY 418
Query: 598 PMHPHLNHLSSDVCRGVLEFAEGRPLGKS-GLRWLKIHLANLFSGGVEKLSHDGRLAFVE 656
L+ S+D+ + +L F EG+ L + L+W ++ AN + G +K + D R A V
Sbjct: 419 AQSSTLSPQSNDLGKALLRFTEGQRLDSAEALKWFLVNGAN--NWGWDKKTFDVRTANVL 476
Query: 657 NHLYEIF--DSAENPINGSRWWLTAEDPFQCLAACINLS---EALKSSSPHSVISHLPIH 711
+ ++ D A +P+ ++W + A+ P+ LA C + +AL + ++HLP+H
Sbjct: 477 DSEFQDMCRDIAADPLTFTQW-VNADSPYGFLAWCFEYARYLDALDEGTQDQFMTHLPVH 535
Query: 712 QDGSCNGLQHYAALGRNTLEAAAVNLVAGEKPADVYSEIAVRV----HEIMKRDSNKDPS 767
QDGSC+G+QHY+A+ R+ + A AVNL + P D+Y +A V + M + + +
Sbjct: 536 QDGSCSGIQHYSAMLRDAVGAKAVNLKPSDSPQDIYGAVAQVVIQKNYAYMNAEDAETFT 595
Query: 768 KHPQALLAKIL--------IDQVDRKLVKQTVMTSVYGVTFVGAREQIKR---RLEEK-- 814
L L + + R L K+ VMT YG T + RE + LEEK
Sbjct: 596 SGSVTLTGAELRSMASAWDMIGITRGLTKKPVMTLPYGSTRLTCRESVIDYIVDLEEKEA 655
Query: 815 ------GHITDDRQLF-----------AAACYAAKVTLTALGEIFEAARSIMGWLGDCAK 857
G + F AA Y + ++ E+ +A M + A+
Sbjct: 656 QRAIAEGRTANPVHPFDNDRKDSLTPSAAYNYMTALIWPSISEVVKAPIVAMKMIRQLAR 715
Query: 858 VIASENQPVRWTTPLGLPVVQPYCKNERHLIRTSLQ---VLALQREGNLVKIRKQRTAFP 914
A N+ + +T P G + Q + + T L ++LQ E ++V A
Sbjct: 716 FAAKRNEGLEYTLPTGFILQQKIMATDMLRVSTCLMGEIKMSLQIETDVVDETAMMGAAA 775
Query: 915 PNFVHSLDGSHMMMTAVACRDAGL 938
PNFVH D SH+++T D G+
Sbjct: 776 PNFVHGHDASHLILTVCDLVDKGI 799
>gi|147770014|emb|CAN63269.1| hypothetical protein VITISV_026360 [Vitis vinifera]
Length = 798
Score = 184 bits (467), Expect = 2e-43, Method: Compositional matrix adjust.
Identities = 80/117 (68%), Positives = 99/117 (84%)
Query: 614 VLEFAEGRPLGKSGLRWLKIHLANLFSGGVEKLSHDGRLAFVENHLYEIFDSAENPINGS 673
+LEF EGR LGKS L WL IHL NL++GG++KLS++G +AF+ENHL +IFDS + P+ G
Sbjct: 675 ILEFVEGRLLGKSSLHWLNIHLENLYAGGLDKLSYEGWVAFIENHLEDIFDSTDRPLEGR 734
Query: 674 RWWLTAEDPFQCLAACINLSEALKSSSPHSVISHLPIHQDGSCNGLQHYAALGRNTL 730
WL+AEDPFQCLAACINLSEAL+SSSP + ISH+P+HQDGSCN LQH AALGR+T+
Sbjct: 735 HGWLSAEDPFQCLAACINLSEALRSSSPETTISHMPVHQDGSCNDLQHSAALGRDTV 791
>gi|422937609|ref|YP_007007815.1| putative DNA-dependent RNA polymerase [Aeromonas phage phiAS7]
gi|374713597|gb|AEZ65066.1| putative DNA-dependent RNA polymerase [Aeromonas phage phiAS7]
Length = 816
Score = 184 bits (466), Expect = 3e-43, Method: Compositional matrix adjust.
Identities = 189/721 (26%), Positives = 314/721 (43%), Gaps = 89/721 (12%)
Query: 246 AYAPHIELLPADKVAVIVMHKMMGLVMAGHEDRCVQVVQAAVHIGMAIEQEIRIHSFLEK 305
AY+P + L D V+++ + ++ V + E + + A IG + E+ + SF
Sbjct: 72 AYSPLLHALDPDAVSLLAITTLVESVCSRKEG-YIHLGFLASEIGRRVYGELALASF--- 127
Query: 306 TKNYKRKKIIADTEEVLSKEKELLRKRVNSLIKSKRVMEAQKLLKNEETKPWGRDTQAKL 365
++ + A T+++ SK + LR ++ M+AQK E W +A++
Sbjct: 128 -RDINPELYEALTKDLQSKMSQDLRHKLTVF-----RMQAQK--AGIELPEWTPSQKAQV 179
Query: 366 GSRLVELLIETAYVQHPVNPADYSPPDVRPAFRHRFKTILKHPGQKTTKRYGVVECDPLV 425
GS LV L+ + + P + T+ G K+ VV V
Sbjct: 180 GSYLVSLMEKQS---------------GDPKYLCELDTVAT--GHKSAY---VVYLSKHV 219
Query: 426 LEGLDRSAKHMLIPY---VPMLVPPKKWK--GYNKGGYLFLPSYVMRTH-GSRKQQEALK 479
E + M++ P L+PP+ W G G Y L +R GS +Q E ++
Sbjct: 220 HELMAEIEDRMMLKAGFAAPCLIPPQPWDADGTQGGFYGDLKVRAVRFFKGSSEQWEIMR 279
Query: 480 SVTGNCMKKVFEALDTLGSTKWRVNKQVLSVLESIWVSGGNIAGLVDRNDVLIPEKPLSE 539
S G+ V L+ + + W+VN +L +++ + G + + PE+PL
Sbjct: 280 S-EGHDPAIVLGMLNAVQNVAWKVNPFILDLIKQMRAKGLETKTVRTTAALPKPERPLFL 338
Query: 540 DMT----------EVQKWK-----W--SVRKAKKINQERHSQRCDTELKLSVARRMKDEE 582
D+ E ++WK W VRK +I E M +
Sbjct: 339 DLQDGALTPEQEEEKKRWKRKMRDWHTEVRKVSRIEARLAVAIAAAE-------EMLKHD 391
Query: 583 GFYYPHNLDFRGRAYPMHPHLNHLSSDVCRGVLEFAEGRPL-GKSGLRWLKIHLANLFSG 641
FY+ H + R R YP+ L+ +D + +L A+G P+ L W K+++A F
Sbjct: 392 RFYFTHQVCDRFRMYPVSGPLSPQGADNQKALLHSADGGPIDSDEALYWFKLNIAAKF-- 449
Query: 642 GVEKLSHDGRLAFVENHLYEIFDSAENPI--NGSRWWLTAEDPFQCLAACINLSEALKSS 699
G++KLS + + +V+++ I +A +P + WW A+ P Q +A C
Sbjct: 450 GIDKLSPEDCVKWVDDNETNIIRAASDPAGRDAFHWWSQADKPLQFIAVCDEYRR--YKL 507
Query: 700 SPHSVISHLPIHQDGSCNGLQHYAALGRNTLEAAAVNLVAGEK--PADVYSEIAVRVHEI 757
P ++ + DG+CNGLQ+Y+AL R+ + A NL++ E PAD+Y ++A R +
Sbjct: 508 DPSGFVARIACAMDGTCNGLQNYSALLRDEVGGRATNLISAEDRVPADIYGDVA-RASWV 566
Query: 758 MKRDSNKDPSKHPQALLAKILIDQVDRKLVKQTVMTSVYGVTFVGAREQIKRRLEEKGHI 817
+S + P + + +RKL K +VMT VYG T+ R+ I E
Sbjct: 567 RLLESVECPFR------TAWMAHGFNRKLTKPSVMTQVYGSTYGTCRKSILSYCIENELF 620
Query: 818 TDDRQLFAAACYAAKVTLTALGEIFEAARSIMGWLGDCAKVIASEN-QPVRWTTPLGLPV 876
D+ + A +A K+ + ++ A+ M WL + A + E + W P G V
Sbjct: 621 EDEE--YEHADFAGKLVWAGIDDVVVKAKEAMKWLRESAGAVMREGANYITWLAPSGARV 678
Query: 877 VQPYCKNERHLIRT------SLQVLALQREGNLVKIRKQRTAFPPNFVHSLDGSHMMMTA 930
VQ Y K + + T LQ+ + K+R R AFPPNF+HS+D SHM M A
Sbjct: 679 VQIYNKYDELRVWTHVGNKIRLQLRGPEHPDKPDKMR-HRNAFPPNFIHSVDASHMAMVA 737
Query: 931 V 931
V
Sbjct: 738 V 738
>gi|414087588|ref|YP_006987773.1| putative RNA polymerase [Enterobacteria phage vB_EcoP_ACG-C91]
gi|383396018|gb|AFH19836.1| putative RNA polymerase [Enterobacteria phage vB_EcoP_ACG-C91]
Length = 875
Score = 182 bits (463), Expect = 5e-43, Method: Compositional matrix adjust.
Identities = 201/789 (25%), Positives = 338/789 (42%), Gaps = 113/789 (14%)
Query: 224 FGPLSEAIEREQKMQRTKKQKAAYA-PHIELLPADKVAVIVMHKMMGLVMAGHEDRCVQV 282
P++E I+ ++ K+ +A A I + + A I M +M ++ + D +Q
Sbjct: 50 IAPMAEGIQAYKEEYEGKRGRAPRALAFINCVENEVAAYITMKIVMDML---NTDVTLQA 106
Query: 283 VQAAVHIGMAIEQEIRIHSFLEKTKNY--KRKKIIADTEEVLSKEKELLRKRVNSLIKSK 340
+ A+++ IE ++R Y K KK + SK K +++ K
Sbjct: 107 I--AMNVADRIEDQVRFSKLEGHAAKYFEKVKKSLK-----ASKTKSYRHAHNVAVVAEK 159
Query: 341 RVMEAQKLLKNEETKPWGRDTQAKLGSRLVELLIETAYVQ-HPVNPADYSPPDVRPAFRH 399
V + E W +DT ++G L+E+L + + PV
Sbjct: 160 SVADRDADFSRWEA--WPKDTLLQIGMTLLEILENSVFFNGQPV---------------- 201
Query: 400 RFKTILKHPGQKTTKRYGVVECDPLVLEGLDRSAKHM--LIP-YVPMLVPPKKWKGYNKG 456
F L+ G K Y ++ V E + +H+ L P Y P ++PP+ W G
Sbjct: 202 -FLRTLRTNGGKHGVYY--LQTSEHVGEWITAFKEHVAQLSPAYAPCVIPPRPWVSPFNG 258
Query: 457 GYLF--LPSYVMRTHGSRKQQEALKSVTGNCMKKVFEALDTLGSTKWRVNKQVLSVLESI 514
G+ + S + GSR E ++ +T M V++A++ L +TKW+VNK+VL V+E +
Sbjct: 259 GFHTEKVASRIRLVKGSR---EHVRKLTKKQMPAVYKAVNALQATKWQVNKEVLQVVEDV 315
Query: 515 W---VSGG--NIAGLVDRNDVLIPEKP------------LSEDMTEVQ-----KWKWSVR 552
+ G + L+DR + P P L E +T Q WK
Sbjct: 316 IRLDLGYGVPSFKPLIDRENK--PANPVPLEFQHLRGRELKEMLTPEQWQAFINWKGECT 373
Query: 553 KAKKINQERHSQRCDTELKLSVARRMKDEEGFYYPHNLDFRGRAYPMHPHLNHLSSDVCR 612
K +R S+ T + AR+ + Y+ + LD R R Y L+ S+D+ +
Sbjct: 374 KLYTAETKRGSKSAATVRMVGQARKYSQFDAIYFVYALDSRSRVYAQSSTLSPQSNDLGK 433
Query: 613 GVLEFAEGRPLGKS-GLRWLKIHLANLFSGGVEKLSHDGRLAFVENHLYEIF--DSAENP 669
+L F EG+ L + L+W ++ AN + G +K + D R A V + ++ D A +P
Sbjct: 434 ALLRFTEGQRLDSTEALKWFLVNGAN--NWGWDKKTFDVRTANVLDGEFQDMCRDIAADP 491
Query: 670 INGSRWWLTAEDPFQCLAACINLS---EALKSSSPHSVISHLPIHQDGSCNGLQHYAALG 726
+ ++W + A+ P+ LA C + +AL + ++HLP+HQDGSC+G+QHY+A+
Sbjct: 492 LTFTQW-VNADSPYGFLAWCFEYARYLDALDEGTQDQFMTHLPVHQDGSCSGIQHYSAML 550
Query: 727 RNTLEAAAVNLVAGEKPADVYSEIAVRV----HEIMKRDSNKDPSKHPQALLAKIL---- 778
R+ + A AVNL + P D+Y +A V + M + + + L L
Sbjct: 551 RDEVGAKAVNLKPSDSPQDIYGAVAQVVIQKNYAYMNAEDAETFTSGSVTLTGAELRSMA 610
Query: 779 ----IDQVDRKLVKQTVMTSVYGVTFVGAREQIKR---RLEEK--------GHITDDRQL 823
+ + R L K+ VMT YG T + RE + LEEK G +
Sbjct: 611 SAWDMIGITRGLTKKPVMTLPYGSTRLTCRESVIDYIVDLEEKEAQRAIAEGRTANPVHP 670
Query: 824 F-----------AAACYAAKVTLTALGEIFEAARSIMGWLGDCAKVIASENQPVRWTTPL 872
F AA Y + ++ E+ +A M + A+ A N+ + + P
Sbjct: 671 FDNDRKDGLTPSAAYNYMTALIWPSISEVVKAPIVAMKMIRQLARFAAKRNEGLEYPLPT 730
Query: 873 GLPVVQPYCKNERHLIRTSLQ---VLALQREGNLVKIRKQRTAFPPNFVHSLDGSHMMMT 929
G + Q + + T L ++LQ E ++V A PNFVH D SH+++T
Sbjct: 731 GFILQQKIMATDMLRVSTCLMGEIKMSLQIETDVVDETAMMGAAAPNFVHGHDASHLILT 790
Query: 930 AVACRDAGL 938
D G+
Sbjct: 791 VCDLVDKGI 799
>gi|83571724|ref|YP_424976.1| putative RNA polymerase [Enterobacteria phage K1E]
gi|83308175|emb|CAJ29407.1| gp7 protein [Enterobacteria phage K1E]
Length = 875
Score = 182 bits (461), Expect = 1e-42, Method: Compositional matrix adjust.
Identities = 200/789 (25%), Positives = 338/789 (42%), Gaps = 113/789 (14%)
Query: 224 FGPLSEAIEREQKMQRTKKQKAAYA-PHIELLPADKVAVIVMHKMMGLVMAGHEDRCVQV 282
P++E I+ ++ K+ +A A I + + A I M +M ++ + D +Q
Sbjct: 50 IAPMAEGIQAYKEEYEGKRGRAPRALAFINCVGNEVAAYITMKIVMDML---NTDVTLQA 106
Query: 283 VQAAVHIGMAIEQEIRIHSFLEKTKNY--KRKKIIADTEEVLSKEKELLRKRVNSLIKSK 340
+ A+++ IE ++R Y K KK + SK K +++ K
Sbjct: 107 I--AMNVADRIEDQVRFSKLEGHAAKYFEKVKKSLK-----ASKTKSYRHAHNVAVVAEK 159
Query: 341 RVMEAQKLLKNEETKPWGRDTQAKLGSRLVELLIETAYVQ-HPVNPADYSPPDVRPAFRH 399
V + E W +DT ++G L+E+L + + PV
Sbjct: 160 SVADRDADFSRWEA--WPKDTLLQIGMTLLEILENSVFFNGQPV---------------- 201
Query: 400 RFKTILKHPGQKTTKRYGVVECDPLVLEGLDRSAKHM--LIP-YVPMLVPPKKWKGYNKG 456
F L+ G K Y ++ V E + +H+ L P Y P ++PP+ W G
Sbjct: 202 -FLRTLRTNGGKHGVYY--LQTSEHVGEWITAFKEHVAQLSPAYAPCVIPPRPWVSPFNG 258
Query: 457 GYLF--LPSYVMRTHGSRKQQEALKSVTGNCMKKVFEALDTLGSTKWRVNKQVLSVLESI 514
G+ + S + G+R E ++ +T M V++A++ L +TKW+VNK+VL V+E +
Sbjct: 259 GFHTEKVASRIRLVKGNR---EHVRKLTKKQMPAVYKAVNALQATKWQVNKEVLQVVEDV 315
Query: 515 W---VSGG--NIAGLVDRNDVLIPEKP------------LSEDMTEVQ-----KWKWSVR 552
+ G + L+DR + P P L E +T Q WK
Sbjct: 316 IRLDLGYGVPSFKPLIDRENK--PANPVPLEFQHLRGRELKEMLTPEQWQAFINWKGECT 373
Query: 553 KAKKINQERHSQRCDTELKLSVARRMKDEEGFYYPHNLDFRGRAYPMHPHLNHLSSDVCR 612
K +R S+ T + AR+ + Y+ + LD R R Y L+ S+D+ +
Sbjct: 374 KLYTAETKRGSKSAATVRMVGQARKYSQFDAIYFVYALDSRSRVYAQSSTLSPQSNDLGK 433
Query: 613 GVLEFAEGRPLGKS-GLRWLKIHLANLFSGGVEKLSHDGRLAFVENHLYEIF--DSAENP 669
+L F EG+ L + L+W ++ AN + G +K + D R A V + ++ D A +P
Sbjct: 434 ALLRFTEGQRLDSAEALKWFLVNGAN--NWGWDKKTFDVRTANVLDSEFQDMCRDIAADP 491
Query: 670 INGSRWWLTAEDPFQCLAACINLS---EALKSSSPHSVISHLPIHQDGSCNGLQHYAALG 726
+ ++W + A+ P+ LA C + +AL + ++HLP+HQDGSC+G+QHY+A+
Sbjct: 492 LTFTQW-VNADSPYGFLAWCFEYARYLDALDEGTQDQFMTHLPVHQDGSCSGIQHYSAML 550
Query: 727 RNTLEAAAVNLVAGEKPADVYSEIAVRV----HEIMKRDSNKDPSKHPQALLAKIL---- 778
R+ + A AVNL + P D+Y +A V + M + + + L L
Sbjct: 551 RDAVGAKAVNLKPSDSPQDIYGAVAQVVIQKNYAYMNAEDAETFTSGSVTLTGAELRSMA 610
Query: 779 ----IDQVDRKLVKQTVMTSVYGVTFVGAREQIKR---RLEEK--------GHITDDRQL 823
+ + R L K+ VMT YG T + RE + LEEK G +
Sbjct: 611 SAWDMIGITRGLTKKPVMTLPYGSTRLTCRESVIDYIVDLEEKEAQRAIAEGRTANPVHP 670
Query: 824 F-----------AAACYAAKVTLTALGEIFEAARSIMGWLGDCAKVIASENQPVRWTTPL 872
F AA Y + ++ E+ +A M + A+ A N+ + + P
Sbjct: 671 FDNDRKDSLTPSAAYNYMTALIWPSISEVVKAPIVAMKMIRQLARFAAKRNEGLEYPLPT 730
Query: 873 GLPVVQPYCKNERHLIRTSLQ---VLALQREGNLVKIRKQRTAFPPNFVHSLDGSHMMMT 929
G + Q + + T L ++LQ E ++V A PNFVH D SH+++T
Sbjct: 731 GFILQQKIMATDMLRVSTCLMGEIKMSLQIETDVVDETAMMGAAAPNFVHGHDASHLILT 790
Query: 930 AVACRDAGL 938
D G+
Sbjct: 791 VCDLVDKGI 799
>gi|312062870|gb|ADQ12732.1| putative RNA polymerase [Acinetobacter phage phiAB1]
Length = 805
Score = 181 bits (458), Expect = 2e-42, Method: Compositional matrix adjust.
Identities = 146/533 (27%), Positives = 241/533 (45%), Gaps = 57/533 (10%)
Query: 432 SAKHMLIPYVPMLVPPKKWKGYNKGGYLF------LPSYVMRTHGSRKQQEALKSVTGNC 485
SA ++ Y PML+ P W+G GGYL P +R + + ++ N
Sbjct: 218 SAARAVVKYPPMLIKPMDWEGQYNGGYLTEWFKHNSPMCGIRFIKKEHKHWVIDNLN-NG 276
Query: 486 MKKVFEALDTLGSTKWRVNKQVLSVLESIWVSGGNIAGLVDRNDVLIPEKPLSED----- 540
+ V A++ S +R+NK +L++L I GL P P ++D
Sbjct: 277 AELVKAAMNKAQSVPYRINKDILAILRKAVAMRVGILGLPSYQPAPKPAFPFTDDWLKSE 336
Query: 541 -----MTEVQKWK-----WSVRKAKKINQERHSQRCDTELKLSVARRMKDEEGFYYPHNL 590
+ + Q WK W ++AK++ ++ EL + +DEE Y+P +
Sbjct: 337 ATEEELDQFQFWKGLMSSWYTQEAKRVGRQHGILSRIQELV-----KYQDEERLYFPTFI 391
Query: 591 DFRGRAYPMHPHLNHLSSDVCRGVLEFAEGRPLGKSGLRWLKIHLANLFSGGVEKLSHDG 650
D+RGR Y +N S+D +G LEFAEG+PLGK+GL+WLKIH+AN G +K D
Sbjct: 392 DWRGRLY-FRSSINPQSNDCIKGCLEFAEGKPLGKTGLKWLKIHVAN--CCGYDKHDPDL 448
Query: 651 RLAFVENHLYEIFDSAENPINGSRWWLTAEDP---FQCLAACINLSEALKSSSPHSVISH 707
+ + +++ I + NP + + A +P F L A + L AL+ +P S I H
Sbjct: 449 KEKWCDDNWNYIQNFINNPFD-----VEAPEPDTAFTLLQAGLALQSALELETPESYICH 503
Query: 708 LPIHQDGSCNGLQHYAALGRNTLEAAAVNLVAGEKPADVYSEIAVRVHEIMKRDSNKDPS 767
+P+ D +C+GLQH +AL R+ + NL+ + D S+I +RV I D +K
Sbjct: 504 VPVAMDATCSGLQHLSALTRDEVGGLYTNLL--DNGEDQKSDIYMRVAHIA--DESKLEL 559
Query: 768 KHPQALLAKILIDQVDRKLVKQTVMTSVYGVTFVGAREQIKRRLEEKGHITDDRQLFAAA 827
A+ + + R + K+ VMT VYG + + + + E G D+ QL
Sbjct: 560 ADSPAVRQYWVDKPISRNMAKKPVMTYVYGSKLLSTIQGLANDMYEAG--MDEIQLDGKT 617
Query: 828 CY--------AAKVTLTALGEIFEAARSIMGWLGDCAKVIASENQPVRWTTPLGLPVVQP 879
+ K + + + +M +L + + ++ +RW +P+G+PVV
Sbjct: 618 VFTYNRLAKPVGKALRKGVEDTVPKSAEMMNYLQNVVR--KNKADAMRWFSPVGVPVVNW 675
Query: 880 YCKNERHLI---RTSLQVLALQREGNLVKIRKQRTAFPPNFVHSLDGSHMMMT 929
L+ + +A N + PNFVHS+D SH+ +T
Sbjct: 676 AEGMVTKLVAIRSMGISRIAYSYPDNQYNTLRAANGIVPNFVHSMDSSHLCLT 728
>gi|266634771|gb|ACY78114.1| putative DNA-dependent RNA polymerase [Acinetobacter phage phiAB1]
Length = 804
Score = 181 bits (458), Expect = 2e-42, Method: Compositional matrix adjust.
Identities = 146/533 (27%), Positives = 241/533 (45%), Gaps = 57/533 (10%)
Query: 432 SAKHMLIPYVPMLVPPKKWKGYNKGGYLF------LPSYVMRTHGSRKQQEALKSVTGNC 485
SA ++ Y PML+ P W+G GGYL P +R + + ++ N
Sbjct: 218 SAARAVVKYPPMLIKPMDWEGQYNGGYLTEWFKHNSPMCGIRFIKKEHKHWVIDNLN-NG 276
Query: 486 MKKVFEALDTLGSTKWRVNKQVLSVLESIWVSGGNIAGLVDRNDVLIPEKPLSED----- 540
+ V A++ S +R+NK +L++L I GL P P ++D
Sbjct: 277 AELVKAAMNKAQSVPYRINKDILAILRKAVAMRVGILGLPSYQPAPKPAFPFTDDWLKSE 336
Query: 541 -----MTEVQKWK-----WSVRKAKKINQERHSQRCDTELKLSVARRMKDEEGFYYPHNL 590
+ + Q WK W ++AK++ ++ EL + +DEE Y+P +
Sbjct: 337 ATEEELDQFQFWKGLMSSWYTQEAKRVGRQHGILSRIQELV-----KYQDEERLYFPTFI 391
Query: 591 DFRGRAYPMHPHLNHLSSDVCRGVLEFAEGRPLGKSGLRWLKIHLANLFSGGVEKLSHDG 650
D+RGR Y +N S+D +G LEFAEG+PLGK+GL+WLKIH+AN G +K D
Sbjct: 392 DWRGRLY-FRSSINPQSNDCIKGCLEFAEGKPLGKTGLKWLKIHVAN--CCGYDKHDPDL 448
Query: 651 RLAFVENHLYEIFDSAENPINGSRWWLTAEDP---FQCLAACINLSEALKSSSPHSVISH 707
+ + +++ I + NP + + A +P F L A + L AL+ +P S I H
Sbjct: 449 KEKWCDDNWNYIQNFINNPFD-----VEAPEPDTAFTLLQAGLALQSALELETPESYICH 503
Query: 708 LPIHQDGSCNGLQHYAALGRNTLEAAAVNLVAGEKPADVYSEIAVRVHEIMKRDSNKDPS 767
+P+ D +C+GLQH +AL R+ + NL+ + D S+I +RV I D +K
Sbjct: 504 VPVAMDATCSGLQHLSALTRDEVGGLYTNLL--DNGEDQKSDIYMRVAHIA--DESKLEL 559
Query: 768 KHPQALLAKILIDQVDRKLVKQTVMTSVYGVTFVGAREQIKRRLEEKGHITDDRQLFAAA 827
A+ + + R + K+ VMT VYG + + + + E G D+ QL
Sbjct: 560 ADSPAVRQYWVDKPISRNMAKKPVMTYVYGSKLLSTIQGLANDMYEAG--MDEIQLDGKT 617
Query: 828 CY--------AAKVTLTALGEIFEAARSIMGWLGDCAKVIASENQPVRWTTPLGLPVVQP 879
+ K + + + +M +L + + ++ +RW +P+G+PVV
Sbjct: 618 VFTYNRLAKPVGKALRKGVEDTVPKSAEMMNYLQNVVR--KNKADAMRWFSPVGVPVVNW 675
Query: 880 YCKNERHLI---RTSLQVLALQREGNLVKIRKQRTAFPPNFVHSLDGSHMMMT 929
L+ + +A N + PNFVHS+D SH+ +T
Sbjct: 676 AEGMVTKLVAIRSMGISRIAYSYPDNQYNTLRAANGIVPNFVHSMDSSHLCLT 728
>gi|148724458|ref|YP_001285424.1| RNA polymerase [Cyanophage Syn5]
gi|145588103|gb|ABP87922.1| RNA polymerase [Synechococcus phage Syn5]
Length = 779
Score = 179 bits (454), Expect = 6e-42, Method: Compositional matrix adjust.
Identities = 192/783 (24%), Positives = 342/783 (43%), Gaps = 109/783 (13%)
Query: 175 FNLLRRRQVKQETEAWERMVDEYKELEAKMIEKRLAPNLPHIKGLFLGWFGPLSEAI-ER 233
F+L+ R Q+++ETEA E ++ + E+ A + + + P+++ I ER
Sbjct: 3 FDLIAR-QLQRETEAAELARKRLQDARREANERSYASSNIESRKAIATFLDPIAQRIGER 61
Query: 234 EQKMQRTKKQKAAYAPHIELLPADK--VAVIVMHKMMGLVMAGHEDRCVQVVQAAVHIGM 291
++R A + L AD +A+I M + ++ +D Q+ Q IG
Sbjct: 62 LFTLRRGTGAVDAAEVYKHLKNADHHHLALITMKTALDVL---GKDPEPQIQQLTTAIGR 118
Query: 292 AIEQEIRIHSFLEKTKN-YKRKKIIADTEEVLSKEKELLRKRVNSLIKSKRVMEAQKLLK 350
I+ E+R+ + E+ YK+ ++ +++ + N +
Sbjct: 119 NIQLELRLTYYAEENPELYKQASRFFHAGTGTRQKATVIKLKFNR--------------E 164
Query: 351 NEETKPWGRDTQAKLGSRLVELLIE-TAYVQHPVNPADYSPPDVRPAFRHRFKTILKHPG 409
E W R T K+G L+ + + T +++ + R + + KT + +
Sbjct: 165 GIEWDQWSRVTCHKVGQWLMLAMADVTGWIERATD---------RTSGGRKTKTRICYSR 215
Query: 410 QKTTKRYGVVECDPLVLEGLDRSAKHMLIPYVPMLVPPKKWKGYNKGGYLF-----LPSY 464
+ R ++ +A+ + PML PP +W + GGYL +
Sbjct: 216 EFLQHRDTILA-----------AAEQLAFCQWPMLCPPIEWSNDHNGGYLSEQIRRVNPL 264
Query: 465 VMRTH--GSRKQQEALKSVTGNCMKKVFEALDTLGSTKWRVNKQVLSVLESIWVSGGNIA 522
+ +T G+RKQ + ++ L+ L ++VN +VL + + S +
Sbjct: 265 IRKTGPLGTRKQGDIPLAM-----------LNNLQGQAYKVNPEVLDIANHCYESNVTVG 313
Query: 523 GLVDRNDVLIPEKPLSEDMTEVQ--KWKWSVRKAKKINQERHSQRCDTELKLSVARRMKD 580
+ + +P P ED TE Q +K + R+A+ N + + T + VAR+ D
Sbjct: 314 KFIRHAPLPVPPSP-GEDCTEDQLTAYKRARREAEDFNAQISQKNWRTTEVMYVARKYAD 372
Query: 581 EEGFYYPHNLDFRGRAYPMHPHLNHLSSDVCRGVLEFAEGRPLGKSGLRWLKIHLANLFS 640
E F+ P + D+RGR Y ++ LN +D + +L FAE P+ + WL H+A +
Sbjct: 373 EASFWMPASFDYRGRVYFLNTALNPQGTDFDKALLYFAEEGPVNEW---WLSFHVATTY- 428
Query: 641 GGVEKLSHDGRLAFVENHLYEIFDS-AENPINGSRWWLTAEDPFQCLAACINLSEALKSS 699
G++K + R+ + ++ +E+ D A +P+ + W A++P+ LAAC+ +
Sbjct: 429 -GLDKETMVNRVQWARDN-HELIDRIASDPVRHTE-WHDADEPWCFLAACLEYKACVIDG 485
Query: 700 SPHSVISHLPIHQDGSCNGLQHYAALGRNTLEAAAVNLVAGEKPADVYSEIAVRVHEIMK 759
+ + S LPI D +C+GLQH AA+ R AA VN+ +KPAD Y +A
Sbjct: 486 TKQT--SGLPIGIDATCSGLQHLAAMTRCGRTAALVNVTPTDKPADAYKTVA-------- 535
Query: 760 RDSNKDPSKHPQALLAKILIDQVDRKLVKQTVMTSVYGVTFVGAREQIKRRLEEKGHITD 819
+ KH L K + + RK+ K+ VM + YGVT AR I+ +L + GH D
Sbjct: 536 ----QASLKH----LPKEQHEWITRKVTKRPVMCTPYGVTMSSARGYIRDQLVKDGHKED 587
Query: 820 DRQLFAAACYAAKVTLTALGEIFEAARSIMGWLGDCA-KVIASENQPVRWTTPLGLPVVQ 878
R + A+ E+ +M WL A ++I + + WTTP G VVQ
Sbjct: 588 LRSPGVLNGIVKAIFNEAIPEVIPGPVQVMAWLKRSAGQIIDRGDSTITWTTPSGFEVVQ 647
Query: 879 PYCKNERHLIRTSLQVLALQREGNLVKIR------------KQRTAFPPNFVHSLDGSHM 926
K++ + ++T + G +K++ ++A PN VHS D S +
Sbjct: 648 DLKKSKTYEVKTRIM------GGARIKLQVGDGFTDEPDRDHHKSALAPNVVHSNDASLL 701
Query: 927 MMT 929
+T
Sbjct: 702 HLT 704
>gi|441463031|gb|AGC35317.1| putative RNA polymerase [Acinetobacter phage AB3]
Length = 805
Score = 179 bits (453), Expect = 9e-42, Method: Compositional matrix adjust.
Identities = 144/536 (26%), Positives = 243/536 (45%), Gaps = 63/536 (11%)
Query: 432 SAKHMLIPYVPMLVPPKKWKGYNKGGYLF------LPSYVMRTHGSRKQQEALKSVTGNC 485
SA ++ Y PML+ P W+G GGYL P +R +Q + + N
Sbjct: 218 SAARAVVKYPPMLIKPMDWEGQYNGGYLTEWFKHNSPMCGIRFIKKEHKQWVIDKLN-NG 276
Query: 486 MKKVFEALDTLGSTKWRVNKQVLSVLESIWVSGGNIAGLVDRNDVLIPEKPLSED----- 540
+ V A++ S +R+NK +L++L I GL P P +ED
Sbjct: 277 AELVKAAMNKAQSVPYRINKDILAILRKAVAMRVGILGLPSYQPAPQPAFPFTEDWLKSE 336
Query: 541 -----MTEVQKWK-----WSVRKAKKINQERHSQRCDTELKLSVARRMKDEEGFYYPHNL 590
+ + Q WK W ++AK++ ++ EL + +DEE Y+P +
Sbjct: 337 ATEEELDQFQFWKGLMSSWYTQEAKRVGRQHGILSRIQELV-----KYQDEERLYFPTFI 391
Query: 591 DFRGRAYPMHPHLNHLSSDVCRGVLEFAEGRPLGKSGLRWLKIHLANLFSGGVEKLSHDG 650
D+RGR Y +N S+D +G LEFAEG+PLGK+GL+WLKIH+AN G +K D
Sbjct: 392 DWRGRLY-FRSSINPQSNDCIKGCLEFAEGKPLGKTGLKWLKIHVAN--CCGYDKHDPDL 448
Query: 651 RLAFVENHLYEIFDSAENPINGSRWWLTAEDP---FQCLAACINLSEALKSSSPHSVISH 707
+ + +++ I + NP + + A +P F L A + L AL P + + H
Sbjct: 449 KEKWCDDNWNYIKNFINNPFD-----VDAPEPDTAFTLLQAGLALQSALALPDPTTYVCH 503
Query: 708 LPIHQDGSCNGLQHYAALGRNTLEAAAVNLV--AGEKPADVYSEIAVRVHEIMKRDSNKD 765
+P+ D +C+GLQH +AL R+ + NL+ E+ +D+Y +A V + K +
Sbjct: 504 VPVAMDATCSGLQHLSALTRDEVGGLYTNLLDNGEEQKSDIYMRVA-HVADASKLELADS 562
Query: 766 PSKHPQALLAKILIDQ-VDRKLVKQTVMTSVYGVTFVGAREQIKRRLEEKGHITDDRQLF 824
P+ + + D+ + R + K+ VMT VYG + + + + E G D+ QL
Sbjct: 563 PA------VRQYWSDKPISRNMAKKPVMTYVYGSKLLSTIQGLANDMYEAG--MDEIQLD 614
Query: 825 AAACY--------AAKVTLTALGEIFEAARSIMGWLGDCAKVIASENQPVRWTTPLGLPV 876
+ K + + + +M +L + + ++ +RW +P+G+PV
Sbjct: 615 GKTVFTYNRLAKPVGKALRKGVEDTVPKSAEMMNYLQNVVR--KNKADAMRWFSPVGVPV 672
Query: 877 V---QPYCKNERHLIRTSLQVLALQREGNLVKIRKQRTAFPPNFVHSLDGSHMMMT 929
V + + + +A + N + PNFVHS+D SH+ +T
Sbjct: 673 VNWAEGMVTKTVAIRSMGINNIAYRYPDNQYNTVRAANGIVPNFVHSMDSSHLCLT 728
>gi|423262052|ref|YP_007010652.1| putative DNA-directed RNA polymerase [Pectobacterium phage PP1]
gi|399220984|gb|AFP33672.1| putative DNA-directed RNA polymerase [Pectobacterium phage PP1]
Length = 859
Score = 178 bits (452), Expect = 1e-41, Method: Compositional matrix adjust.
Identities = 191/788 (24%), Positives = 336/788 (42%), Gaps = 113/788 (14%)
Query: 224 FGPLSEAIEREQKMQRTKKQKAAYA-PHIELLPADKVAVIVMHKMMGLVMAGHEDRCVQV 282
P++E I+ ++ +K K A ++ + + I M +M ++ + D +Q
Sbjct: 36 IAPMAEGIQTYKEHYTGRKGKPVRALAFLQCVENEVAGYITMKVVMDML---NTDVTLQA 92
Query: 283 VQAAVHIGMAIEQEIRIHSFLEKTKNYKRKKIIADTEEVLSKEKELLRKRVNSLIKSKRV 342
V A+ I IE ++R S LE +K+ A + SK+ RV
Sbjct: 93 V--AMTIAERIEDQVRF-SKLEGVAAKYFEKVKASLQASRSKQYR----------HGHRV 139
Query: 343 M-EAQKLLKN-----EETKPWGRDTQAKLGSRLVELLIETAYVQHPVNPADYSPPDVRPA 396
M A+K L E + W ++ ++G L+++L + + + P
Sbjct: 140 MVSAEKSLTERGEDVERWEAWPKEVCLQIGMTLLDILETSVFFEG------------EPV 187
Query: 397 FRHRFKTILKHPGQKTTKRYGVVECDPLVLEGLDRSAKHMLIPYVPMLVPPKKWKGYNKG 456
F F+ I + G ++T E + + Y P ++PP+ WK G
Sbjct: 188 F---FRAI-RQNGVRSTYYLQTSETVGNWISEFREHVSQLAPAYAPCVIPPRPWKSPFNG 243
Query: 457 GYLFLPSYVMRTHGSRKQQEALKSVTGNCMKKVFEALDTLGSTKWRVNKQVLSVLESI-- 514
G+ R + ++E ++ +T M V++A++ L T+W+VN VL+V + +
Sbjct: 244 GF-HSEKVASRVRLVKGKREHVRRLTPKQMPNVYKAINALQETQWQVNTDVLAVADDVVR 302
Query: 515 ---WVSGGNIAGLVDRNDVLIPEKP------------LSEDMTEVQ-----KWKWSVRKA 554
+ + L+DR++ P P L E + + Q WK +
Sbjct: 303 LNLGYGMPSFSPLIDRDNK--PNNPVPVEFQHLRGRELKEMLNDDQWSTFIAWKGECARL 360
Query: 555 KKINQERHSQRCDTELKLSVARRMKDEEGFYYPHNLDFRGRAYPMHPHLNHLSSDVCRGV 614
+R S+ + AR+ + ++ + +D R R Y L+ S+D+ + +
Sbjct: 361 YTAETKRGSKSAAVVRMIGQARKYSKFDAIHFVYAMDSRSRVYAQSSTLSPQSNDLGKAL 420
Query: 615 LEFAEGRPLGK-SGLRWLKIHLANLFSGGVEKLSHDGRLAFVENHLYEIF--DSAENPIN 671
L+FAEGR + LRW + ANL+ G +K D R++ V + ++ D A +P+
Sbjct: 421 LKFAEGRSIATVEDLRWFCVCGANLW--GWDKKIFDTRVSNVLDDDFKEMCRDIAADPLT 478
Query: 672 GSRWWLTAEDPFQCLAACINLSEAL---KSSSPHSVISHLPIHQDGSCNGLQHYAALGRN 728
++W A++P+Q LA I + L + ++HLP+HQDGSC+G+QHY+A+ R+
Sbjct: 479 FTQW-AGADEPYQFLAWAIEYASYLDHVEDGRSSEFLTHLPVHQDGSCSGIQHYSAMLRD 537
Query: 729 TLEAAAVNLVAGEKPADVYSEIAVRVHEIMKRDSNKDPSKHP--------------QALL 774
+ AAAVNL +P D+Y +A V I K +N D + +A+
Sbjct: 538 KVGAAAVNLSPSNEPQDIYGRVAQVV--IEKNTANMDAREEDVFTSGSLTLQGSVLRAMA 595
Query: 775 AKILIDQVDRKLVKQTVMTSVYGVTFVGAREQIKRRL------EEKGHITDDRQLFA--- 825
+ + R L K+ VMT YG T + R+ + L E K + R + A
Sbjct: 596 SAWDCIGITRNLTKKPVMTLPYGSTRLTCRDAVADYLVGLEESEAKKAAAEGRGINAVHP 655
Query: 826 ------------AACYAAKVTLTALGEIFEAARSIMGWLGDCAKVIASENQPVRWTTPLG 873
A Y + ++ E+ +A M + A+ A N+ + T P G
Sbjct: 656 FGNDEGQTREGSALNYMTALIWPSISEVVKAPVVAMKMIRQLARYAARRNEGLEVTLPTG 715
Query: 874 LPVVQPYCKNERHLIRTSLQV---LALQREGNLVKIRKQRTAFPPNFVHSLDGSHMMMTA 930
+ Q + +++T L ++LQ E ++V A PNFVH D SH++ T
Sbjct: 716 FILQQKIMATQALVVKTQLMGRIEMSLQVETDIVDEAAMMGAAAPNFVHGHDASHLINTV 775
Query: 931 VACRDAGL 938
A DAG+
Sbjct: 776 CALVDAGV 783
>gi|291334905|gb|ADD94542.1| DNA directed RNA polymerase [uncultured phage MedDCM-OCT-S08-C159]
Length = 584
Score = 178 bits (452), Expect = 1e-41, Method: Compositional matrix adjust.
Identities = 146/535 (27%), Positives = 240/535 (44%), Gaps = 56/535 (10%)
Query: 431 RSAKHMLIPYVPMLVP----PKKWKGYNKGGYLFLPSYVMRTHGSRKQQEALKSVTGNCM 486
R + I P+L P P+ W N GGY + R Q A+K+ + +
Sbjct: 3 RKGRSNRIAAYPLLQPCFDKPRPWTSINDGGY----------YTKRLQTRAIKTTDRDSI 52
Query: 487 KKVFE--------ALDTLGSTKWRVNKQVLSVLESIWVSGGNIAGLVDRNDVLIPEKPLS 538
K++ E AL T W VNK VL +L W + L+DR +P KPL
Sbjct: 53 KRLQEENLSTSLKALTLASQTAWTVNKFVLEILVYCWEERIEVGSLIDRELAELPTKPLD 112
Query: 539 EDMT--EVQKWKWSVRKAKKINQERHSQRCDTELKLSVARRMKDEEGFYYPHNLDFRGRA 596
D ++W++ +N S+R + A++ DE+ F++ + D+ GR
Sbjct: 113 IDTNPDSRKEWRYLASLIHDMNAHNKSKRYQILSMIDTAQKYSDEK-FFHVYQFDWTGRM 171
Query: 597 YPMHPHLNHLSSDVCRGVLEFAEGRPL-GKSGLRWLKIHLANLFSGGVEKLSHDGRLAFV 655
YP+ H + +D+ RG+ F +G + K L WL I AN + G+ K S++ RL +
Sbjct: 172 YPVTAHFHPQGNDIARGLHIFHKGAAINNKKQLNWLAIAGANHW--GLNKESYEERLEWA 229
Query: 656 ----ENHLYEIFDSAENPINGSRWWLTAEDPFQCLAACINLSEALKSSSPHSVISHLPIH 711
+ +I+D +PI W A++P+Q L C +E + + +SH
Sbjct: 230 YIAGTDLALQIYD---DPIAHVDIWGKAKEPWQFLGWCKEWAEYQRDGWGY--VSHHVCC 284
Query: 712 QDGSCNGLQHYAALGRNTLEAAAVNLVAGEKPADVYSEIAVRVHEIMKRDSNKDPSKHPQ 771
DG+ NG QH A L N A VNL KP D+Y++I E++ ++ KD P+
Sbjct: 285 LDGTNNGYQHIAGLTGNQHLANKVNLQNVNKPQDLYAQIL----EVLLQELEKDDK--PE 338
Query: 772 ALLAKILIDQVDRKLVKQTVMTSVYGVTFVGAREQIKRRLEEKGHITDDRQL---FAAAC 828
A + D++ RK +K+ V+ Y T G I EK + ++ + F
Sbjct: 339 AKEWLEIKDKLTRKFIKKPVLMVPYNSTTFGIANYI-----EKYFVNENISMAKNFQNNF 393
Query: 829 YAAKVTLTALGEIFEAARSIMGWLGDCAKVIASENQPVRWTTPLGLPVVQPYCKNERHLI 888
Y A + ++ + + ++ L A+ EN+P+RW +P G + Q Y N+ I
Sbjct: 394 YLAHMIEHSVKSVTPESPLLLKHLATIARCFNKENKPIRWHSPSGFLIEQNYYVNQSKRI 453
Query: 889 RTSLQVLAL-----QREGNLVKIRKQRTAFPPNFVHSLDGSHMMMTAVACRDAGL 938
++ + + + + V RKQ FP N++HSLD +H ++ VA GL
Sbjct: 454 KSKISNSTIYLNLAETDKTKVDKRKQHQGFPSNYIHSLDAAHCHLSLVAASKKGL 508
>gi|167821777|ref|ZP_02453457.1| DNA-dependent RNA polymerase [Burkholderia pseudomallei 91]
Length = 769
Score = 177 bits (450), Expect = 2e-41, Method: Compositional matrix adjust.
Identities = 148/505 (29%), Positives = 225/505 (44%), Gaps = 69/505 (13%)
Query: 442 PMLVPPKKWKGYNK-GGYLFLPSYVMRTHGSRKQQEALKSVTGNCMKKVFEALDTLGSTK 500
PMLVPP W ++ GGYL + G+R+ E+ + + AL+ L +T+
Sbjct: 224 PMLVPPVPWTTFSTHGGYLH--DQIPAVRGTRRPIES---------EVIVSALNALQATR 272
Query: 501 WRVNKQVLSVLESIWVSGGNIAGLVDRNDVLIPEKPLSEDMTEVQKWKWSVRKAKKINQE 560
+RVN++VL V ++ + ++ G V + E M R+AK I
Sbjct: 273 FRVNRRVLEVAQTFRTNAEDMGGAVINGRYIETRHDTPESM----------RRAKTIR-- 320
Query: 561 RHSQRCDTELKLSVARRMKDEEGFYYPHNLDFRGRAYPMHPHLNHLSSDVCRGVLEFAEG 620
+ L LS + DE+ FY+P NLD+RGR YP ++ +D+C+G LEFA+G
Sbjct: 321 -------SALTLSAFVELVDEDAFYFPWNLDWRGRMYPATSLISPQGADLCKGCLEFADG 373
Query: 621 RPLGKSGLRWLKIHLANLFSGGVEKLSHDG---------RLAFVENHLYEIFDSAENPIN 671
PLG+ G +WL IHL NL G +K++ G R A+ + I A +P N
Sbjct: 374 TPLGRDGGKWLAIHLCNL--AGEDKVTVGGKKVHRTPDEREAWTLSQESTILRVAADPRN 431
Query: 672 GSRWWLTAEDPFQCLAACINLSEALKSSSPHSVISHLPIHQDGSCNGLQHYAALGRNTLE 731
W+ A+ P+Q LAAC + + S L DGSC+G+Q A + R+
Sbjct: 432 NME-WMKADKPWQFLAACFEWVGYREEGD--AFRSRLAGALDGSCSGVQMLAGMTRDASA 488
Query: 732 AAAVNLVAGEKPADVYSEIAVRVHEIMKRDSNKDPSKHPQALLAKILI---DQVDRKLVK 788
A VNLV E+ D Y +A E + + A +A++ +DR L+K
Sbjct: 489 GAMVNLVPSERGDDYYGRMA----EALSKRLCGLVDHADTATMARLQFWAEKSIDRDLLK 544
Query: 789 QTVMTSVYGVTFVGAREQIKRRLEEKGHITDDRQLFAAACYAAKVTLTALGEIFEAARSI 848
MT VY EQ+ + K + ++ AA A + A G +
Sbjct: 545 APSMTKVYSAGTYTFGEQV----QNKTGAPEAESMWLAAQINACFSDVAPGML-----RA 595
Query: 849 MGWLGDCAKVIASENQPVRWTTPLGLPVVQPYCKNERHLIRTSLQVLALQRE-------G 901
M +L + V+ + P+ W TP GL V Q + T + +++ G
Sbjct: 596 MSYLQAVSDVMTAAGLPLVWRTPAGLRVEQARTCTRSVPLETQIGGPESRKQRRFTVDTG 655
Query: 902 NLVKIRKQRTAFPPNFVHSLDGSHM 926
+L K QR PNFVH +D SHM
Sbjct: 656 DLSK-NDQRAGVAPNFVHGVDASHM 679
>gi|388549265|gb|AFK66464.1| DNA-directed RNA polymerase [Synechococcus phage S-CBP3]
Length = 776
Score = 176 bits (446), Expect = 5e-41, Method: Compositional matrix adjust.
Identities = 153/587 (26%), Positives = 246/587 (41%), Gaps = 63/587 (10%)
Query: 355 KPWGRDTQAKLGSRLVELLIETAYVQHPVNPADYSPPDVRPAFRHRFKTILKHPGQKTTK 414
+PWGR + KLG L++ + E + F+ GQKT
Sbjct: 170 EPWGRHNRVKLGGWLLDAIAEVS---------------------QWFEKSTVQEGQKTVN 208
Query: 415 RYGVVECDPLVLEGLDRSAKHMLIPYV-PMLVPPKKWKGYNKGGYLFLPSYVMRTHGSRK 473
Y V + + + + P PMLVPP W GGY+ + VM HG
Sbjct: 209 -YVVPTAEFMAVRDQIMRDAELFAPIAWPMLVPPNDWSNERAGGYIL--NEVM--HGYDL 263
Query: 474 QQEALKSVTGNCMKKVFEALDTLGSTKWRVNKQVLSVLESIWVSGGNIAGLVDRNDVLIP 533
+ + G K + L+ + + +N ++ V E++ + V + +P
Sbjct: 264 VRRGGPRIQG---KAPIDFLNKIQRVAYTLNPFIVEVAETLQERQTQVGKFVPIVSLDLP 320
Query: 534 EKPLSEDMTEVQKWKWSVRKAKKINQERHSQR--CDTELKLSVARRMKDEEGFYYPHNLD 591
KP+ + + R A+ +N H+ R C T + + R K+ + FY P + D
Sbjct: 321 PKPVDIAENYEARKDYRRRAAETMNTNAHAFRRSCRTRMTMEAVARFKNVDRFYVPWSFD 380
Query: 592 FRGRAYPMHPHLNHLSSDVCRGVLEFAEGRPLGKSGLRWLKIHLANLFSGGVEKLSHDGR 651
+RGRAYP+ L +D + +L FA+ + WL+ A + G++K R
Sbjct: 381 YRGRAYPIPSFLTPQDTDFGKSLLRFADESYMTHEAEDWLRFQCATTY--GLDKAPMSER 438
Query: 652 LAFVENHLYEIFDSAENPINGSRWWLTAEDPFQCLAACINLSEALKSSSPHSVISHLPIH 711
LA+ + I A++PI+ W A++P+Q LAAC L + + + LP+
Sbjct: 439 LAWAHENEELIKRIAKHPIDCLSEWEVADEPWQFLAACDELYHCVLIADRQ--YTGLPVA 496
Query: 712 QDGSCNGLQHYAALGRNTLEAAAVNLVAGEKPADVYSEIAVRVHEIMKRDSNKDPSKHPQ 771
D +C+GLQ A L R+ A VN++ G++P D Y +A E K P+
Sbjct: 497 TDATCSGLQILAGLARDKSTAQLVNVLPGDRPQDAYKVVA----ETAK-------PHCPE 545
Query: 772 ALLAKILIDQVDRKLVKQTVMTSVYGVTFVGAREQIKRRLEEKGHITDDRQLFAAACYAA 831
++ + DRK VK+ VMT Y R I+ L+EK L A
Sbjct: 546 SIQPYM-----DRKTVKRVVMTVPYNAKPYSNRGYIREALKEKKVEISKEDLTA----TV 596
Query: 832 KVTLTALGEIFEAARSIMGWL-GDCAKVIASENQPVRWTTPLGLPVVQPYCKNERHLIRT 890
K A+ + ++M W+ + I + + WTTP G V Q K + IR
Sbjct: 597 KAVRNAMDVVVPGPMAVMSWIESEVRNAIKGGAEFLEWTTPSGFVVHQRLDKYDSQGIRL 656
Query: 891 SL------QVLALQREGNLVKIRKQRTAFPPNFVHSLDGSHMMMTAV 931
L +VL + EG V I + A PN +HSLD S + ++ +
Sbjct: 657 QLLGQARCKVLVKKEEGGKVDINHHKNATAPNLIHSLDASLLHLSTL 703
>gi|294083965|ref|YP_003550722.1| DNA-directed RNA polymerase [Candidatus Puniceispirillum marinum
IMCC1322]
gi|292663537|gb|ADE38638.1| DNA-directed RNA polymerase [Candidatus Puniceispirillum marinum
IMCC1322]
Length = 871
Score = 175 bits (444), Expect = 9e-41, Method: Compositional matrix adjust.
Identities = 147/559 (26%), Positives = 248/559 (44%), Gaps = 54/559 (9%)
Query: 440 YVPMLVPPKKWKGYNKGGYLFLPSYVMRTH-----GSRKQQEALKSVTGNCMKKVFEALD 494
+ PM+VPP W N G + +R ++++ +K++ MK+ +A++
Sbjct: 247 FRPMVVPPINWGTANHVGPYYDTETAIRAPLVKNVNPNQRKKIVKALKTGSMKECLDAVN 306
Query: 495 TLGSTKWRVNKQVLSVLESIWVSGG----NIAGLVDRNDVLIPEKPLSEDMTEVQKWKWS 550
TL + +N+ L+ ++ WV I V +I E ++V+++ +
Sbjct: 307 TLQQVPYTINRYTLAAIK--WVVESKLDVEIEEFVPVTPPIIDENDKDGTPSQVKRYYRA 364
Query: 551 VRKAKKINQERHSQRCDTELKLSVARRMKDEEGFYYPHNLDFRGRAYPMHPHLNHLSSDV 610
RK N + + T+L + + KD+ F+ PHN DFRGR Y + P H D
Sbjct: 365 QRKKSIANA--NLVQFQTDLNEAESLCDKDDRRFWLPHNFDFRGRVYHI-PAFGHHRQDH 421
Query: 611 CRGVLEFAEGRPLGKSGLRWLKIHLANLFSGGV--------EKLSHDGRLAFVENHLYEI 662
RG+ FA+ +P+ K L+ L +A + V +K++ D R +VE++ I
Sbjct: 422 IRGLFMFADKKPITKDNLKHLYFQIATTWGNQVSETDERKTDKITLDERYKWVEDNYEAI 481
Query: 663 FDSAENPINGSRWWLTAEDPFQCLAACINLSEALKSSSPHSVISHLPIHQDGSCNGLQHY 722
+ ++ + G W A+ P Q LAAC L L + LPI DGS +GLQHY
Sbjct: 482 LLAGKDYVAGFEHWSKADAPIQHLAACRELY--LADQHGEGYLCGLPIGFDGSNSGLQHY 539
Query: 723 AALGRNTLEAAAVNLVAGEKPADVYSEIAVRVHEIMKRDSNKDPSKHPQALLAKILIDQ- 781
+ L + +A VNLV P D YS IA + +R + + + + + ++D
Sbjct: 540 SMLMKWKEDAFKVNLVPNHPPQDCYSFIAEADMNLAQRIVDGECDELNENEITNAIMDDC 599
Query: 782 -------VDRKLVKQTVMTSVYGVTFVGAREQIKRRLE---EKGHITDDRQLF------A 825
+ RK K+ +MT Y VT +G +Q + +E +K D F +
Sbjct: 600 HNWLKHGITRKQTKKNIMTWPYSVTLIGMADQNRDDMEIITDKAEEEDAPHPFGEDRGSS 659
Query: 826 AACYAAKVTLTALGEIFEAARSIMGWLGDCAKVIASENQPVRWTTPLGLPVVQPYCKNER 885
A+ AK+ ++ + + M +L D A ++AS N WT+ LG PV Q Y ++
Sbjct: 660 ASMTLAKLNSDSIKAVVASGARGMEFLRDLAGILASRNVHAEWTSILGFPVGQDYRDMKK 719
Query: 886 HLIRTSL----QVLALQREGNL------VKIRKQRTAFPPNFVHSLDGSHMMMTAVACRD 935
I T ++ G L + + + PNFVH +D +H+MM+ +
Sbjct: 720 VTINTEYIDRKTTRKVRYRGTLRAKQPTCETKGSKNGIAPNFVHHMDSTHLMMSVNKSNE 779
Query: 936 AG---LHFAGLSFQSALES 951
G L SF + +ES
Sbjct: 780 YGASNLMCVHDSFSTDIES 798
>gi|316934324|ref|YP_004109306.1| DNA-directed RNA polymerase [Rhodopseudomonas palustris DX-1]
gi|315602038|gb|ADU44573.1| DNA-directed RNA polymerase [Rhodopseudomonas palustris DX-1]
Length = 842
Score = 175 bits (444), Expect = 9e-41, Method: Compositional matrix adjust.
Identities = 150/541 (27%), Positives = 246/541 (45%), Gaps = 57/541 (10%)
Query: 440 YVPMLVPPKKWKGYNKGGYLFLPSYVMRTHGSRKQQEAL----KSVTGNCMKKVFEALDT 495
++P PP W + GG + + + T + +E + +++ M+ +A+
Sbjct: 234 FLPSEEPPVPWSDFKGGGPVDPAARKLVTLVRTRHKETVAAVRRAIADGSMQPALDAVSA 293
Query: 496 LGSTKWRVNKQVLSVLESIWVSGGNIAGLVDRNDVLIPEKPLSED---MTEVQKWKWSVR 552
+ + WR+N +L+V+ G ++ GL +++ +P P ED +++ +K V
Sbjct: 294 VQAVPWRINTAILNVMRECRRRGIDVEGLPPLHNLPMP--PPVEDYDSLSDEEKKLVRVE 351
Query: 553 KA--KKINQERHSQRCDTELKLSVARRMKDEEGFYYPHNLDFRGRAYPMHPHLNHLSSDV 610
+A K N R E + A + E FY PHNLD+RGR YP+ N D
Sbjct: 352 RAAIKTANNSFVVDRMRFEGDMETAEALSRLEQFYIPHNLDWRGREYPLCT-FNFQRGDY 410
Query: 611 CRGVLEFAEGRPLGKSGLRWLKIHLANLFS-GGVEKLSHDGRLAFVENHLYEIFDSAE-- 667
R + F + +P+G+ G+ WLK+HLAN G V K + D R+ + +++L I D A
Sbjct: 411 VRSLFLFKDAKPIGEEGIEWLKVHLANCGDFGKVSKKTFDKRIKWTDDNLERIKDCATKD 470
Query: 668 ----NPIN--GSRWWLTAEDPFQCLAACINLSEALKSSSPHSVISHLPIHQDGSCNGLQH 721
P+ +W A+ PF LAACI L+ AL + + LP DGSC+G QH
Sbjct: 471 WDCGGPLTPEALSFWTQADKPFLFLAACIELTNALAYGPGY--VCGLPCSWDGSCSGAQH 528
Query: 722 YAALGRNTLEAAAVNLVAGEKPADVYSEIAVRVHEIMKRDSNKDPSKHPQALLAKILIDQ 781
A R+ +A VNL+ ++ D+Y+ + + M R KDP +++ IL
Sbjct: 529 LCAATRSE-DAWKVNLIGNDEVHDLYTIVGNAAKQSMAR--AKDP------MVSTILAYD 579
Query: 782 VD-RKLVKQTVMTSVYGVTFVGAREQ--------------IKRRLEEKGHITDDRQLFAA 826
D RK+ K+ MT+ YG G +Q K+R + T A+
Sbjct: 580 GDWRKVFKRNTMTTFYGSKGFGMAQQHMDDLMEPLSREVMQKKRAKHPFGQTRKEHHAAS 639
Query: 827 ACYAAKVTLTALGEIFEAARSIMGWLGDCAKVIASENQPVRWTTPLGLPVVQPYCKNERH 886
AA GEI A ++ M ++ + ++A E +P+ WTTP+GLP Y
Sbjct: 640 RLLAAHAAAAIKGEIPLAIKA-MEFIQKLSAMMAHEGKPLEWTTPIGLPWSNRYHDPVTE 698
Query: 887 LIRTSLQVLALQR-------EGNLVKIRKQRT--AFPPNFVHSLDGSHMMMTAVACRDAG 937
+ + ++R +G I K + PNFVH+ D +H++ T A R G
Sbjct: 699 RVNLWMHDNGVRRPFRPVVADGYKKTINKNHSVNGSAPNFVHACDAAHLLRTVNAARAEG 758
Query: 938 L 938
+
Sbjct: 759 I 759
>gi|464683|sp|P33540.1|RPOP_NEUCS RecName: Full=Probable DNA-directed RNA polymerase
Length = 896
Score = 174 bits (441), Expect = 2e-40, Method: Compositional matrix adjust.
Identities = 153/540 (28%), Positives = 258/540 (47%), Gaps = 64/540 (11%)
Query: 441 VPMLVPPKKWKGYNK------GGYLFLPSYVMRTHGSRKQQEA-LKSVTGNCMKKVFEAL 493
+PM++PP +WK + GG + + +R ++ + + +T N K++ +A+
Sbjct: 284 LPMIIPPLEWKIDDNEKIIEYGGTILNNKHRIRPLRTKSVENSDANDMTYN--KELVDAV 341
Query: 494 DTLGSTKWRVNKQVLSVLESIWVSGGNIAGLVDRNDVLIPEKPLSEDMTEVQKWKWSVRK 553
+ + +N ++L +++ D+ D +I K + D + ++ RK
Sbjct: 342 NFKSKIPYTINLKILD-----FITRDEFINR-DKKDNVIIYKHIHPDSALLGEYMKD-RK 394
Query: 554 AKKINQ--ERHSQRCDTELKLSVARRMKDEEGFYYPHNLDFRGRAYPMHPHLNHLSSDVC 611
KI++ +S+ +S+A+ MKD + FY +D+RGR Y LN ++
Sbjct: 395 NPKISEITTHNSKFLYHSSIISIAKLMKDVKEFYMTVFIDWRGRFYTSSCALNIQGGELA 454
Query: 612 RGVLEFAEGRPLGKSGLRWLKIHLANLFSGGVEKLSHDGRLAFVENHLYEIFDSAENPIN 671
R +L F EG+ L GL+ LKI+ AN F G++K S + RL +VE +L++I D I+
Sbjct: 455 RSLLLFKEGQKLNDIGLKALKIYTANAF--GLDKRSKEERLDWVEQNLHKIID-----ID 507
Query: 672 GSRWWLTAEDPFQCLAACINLSEALKSSSPHSVISHLPIHQDGSCNGLQHYAALGRNTLE 731
W A++P LA + L + P + ISHLPI D +CNGLQH +A+ + +
Sbjct: 508 NYEIWREADEPLLFLACALELKGY--NEDP-NFISHLPILMDATCNGLQHLSAMVNDFVL 564
Query: 732 AAAVNLVA---GEKPADVYSEIAVRVHEIMKRDSNKDPSKHPQALLAKILIDQVDRKLVK 788
A VNL+ + P D+YSE+ + K++ + + L +I V+R LVK
Sbjct: 565 AEKVNLLKSTENDNPRDLYSEVIPHI----KQEILEASKSYEHTNLERI---NVERCLVK 617
Query: 789 QTVMTSVYGVTFVGAREQIKRRLEEK---------------GHITDDRQLFAA--ACYAA 831
+ +MT YG T G +QI + +K I +F +
Sbjct: 618 RGLMTITYGATERGIYDQIVSKFFQKDEWNKTVGLHFVCIDSDIAPKDVVFTQKNILLLS 677
Query: 832 KVTLTALGEIFEAARSIMGWLGDCAKVIASENQPVRWTTPLGLPVVQPYCK----NERHL 887
K+ +L +I ++M + KV+ + PV W TP GL + Q Y K NE
Sbjct: 678 KIIYNSLFKIHPNLNTLMVYFNSIVKVLCELDLPVNWVTPYGLVIQQKYNKFTKYNETTY 737
Query: 888 IRTSLQVLALQREGNLVKIRKQRT--AFPPNFVHSLDGSHMMMTAVACRDAG--LHFAGL 943
+ + L L R+ + I KQ+ AF PNFVHS+DGS++++ RD G ++FA +
Sbjct: 738 VASKRYKLVL-RKADTTSISKQKQIQAFIPNFVHSMDGSNIVLLINTIRDEGRKINFASI 796
>gi|1449393|emb|CAA39045.1| putative RNA polymerase (mitochondrion) [Neurospora crassa]
Length = 896
Score = 173 bits (439), Expect = 3e-40, Method: Compositional matrix adjust.
Identities = 153/540 (28%), Positives = 258/540 (47%), Gaps = 64/540 (11%)
Query: 441 VPMLVPPKKWKGYNK------GGYLFLPSYVMRTHGSRKQQEA-LKSVTGNCMKKVFEAL 493
+PM++PP +WK + GG + + +R ++ + + +T N K++ +A+
Sbjct: 284 LPMIIPPLEWKIDDNEKIIEYGGTILNNKHRIRPLRTKSVENSDANDMTYN--KELVDAV 341
Query: 494 DTLGSTKWRVNKQVLSVLESIWVSGGNIAGLVDRNDVLIPEKPLSEDMTEVQKWKWSVRK 553
+ + +N ++L +++ D+ D +I K + D + ++ RK
Sbjct: 342 NFKSKIPYTINLKLLD-----FITRDEFINR-DKKDNVIIYKHIHPDSALLGEYMKD-RK 394
Query: 554 AKKINQ--ERHSQRCDTELKLSVARRMKDEEGFYYPHNLDFRGRAYPMHPHLNHLSSDVC 611
KI++ +S+ +S+A+ MKD + FY +D+RGR Y LN ++
Sbjct: 395 NPKISEITTHNSKFLYHSSIISIAKLMKDVKEFYMTVFIDWRGRFYTSSCALNIQGGELA 454
Query: 612 RGVLEFAEGRPLGKSGLRWLKIHLANLFSGGVEKLSHDGRLAFVENHLYEIFDSAENPIN 671
R +L F EG+ L GL+ LKI+ AN F G++K S + RL +VE +L++I D I+
Sbjct: 455 RSLLLFKEGQKLNDIGLKALKIYTANAF--GLDKRSKEERLDWVEQNLHKIID-----ID 507
Query: 672 GSRWWLTAEDPFQCLAACINLSEALKSSSPHSVISHLPIHQDGSCNGLQHYAALGRNTLE 731
W A++P LA + L + P + ISHLPI D +CNGLQH +A+ + +
Sbjct: 508 NYEIWREADEPLLFLACALELKGY--NEDP-NFISHLPILMDATCNGLQHLSAMVNDFVL 564
Query: 732 AAAVNLVA---GEKPADVYSEIAVRVHEIMKRDSNKDPSKHPQALLAKILIDQVDRKLVK 788
A VNL+ + P D+YSE+ + K++ + + L +I V+R LVK
Sbjct: 565 AEKVNLLKSTENDNPRDLYSEVIPHI----KQEILEASKSYEHTNLERI---NVERCLVK 617
Query: 789 QTVMTSVYGVTFVGAREQIKRRLEEK---------------GHITDDRQLFAA--ACYAA 831
+ +MT YG T G +QI + +K I +F +
Sbjct: 618 RGLMTITYGATERGIYDQIVSKFFQKDEWNKTVGLHFVCIDSDIAPKDVVFTQKNILLLS 677
Query: 832 KVTLTALGEIFEAARSIMGWLGDCAKVIASENQPVRWTTPLGLPVVQPYCK----NERHL 887
K+ +L +I ++M + KV+ + PV W TP GL + Q Y K NE
Sbjct: 678 KIIYNSLFKIHPNLNTLMVYFNSIVKVLCELDLPVNWVTPYGLVIQQKYNKFTKYNETTY 737
Query: 888 IRTSLQVLALQREGNLVKIRKQRT--AFPPNFVHSLDGSHMMMTAVACRDAG--LHFAGL 943
+ + L L R+ + I KQ+ AF PNFVHS+DGS++++ RD G ++FA +
Sbjct: 738 VASKRYKLVL-RKADTTSISKQKQIQAFIPNFVHSMDGSNIVLLINTIRDEGRKINFASI 796
>gi|18640475|ref|NP_570316.1| RNA polymerase [Synechococcus phage P60]
Length = 574
Score = 173 bits (439), Expect = 4e-40, Method: Compositional matrix adjust.
Identities = 143/503 (28%), Positives = 229/503 (45%), Gaps = 48/503 (9%)
Query: 442 PMLVPPKKWKGYNKGGYLFLPSYVMRTHGSRKQQEALKSVTGNCMKKVF--EALDTLGST 499
PM+ PP W +GGYL G+ + G+ + E L+ L
Sbjct: 35 PMVCPPNDWTDEGRGGYL-----TEEIRGTAPMIRKVGKPIGDSKQGTIPVEFLNNLQRQ 89
Query: 500 KWRVNKQVLSVLESIWVSGGNIAGLV-----DRNDVLIPEKPLSEDMTEVQKWKWSVRKA 554
+R+N +L+V + + + + +R D + P +E ++WK R
Sbjct: 90 SYRINAAILAVANWCYDNSRTVGKFIHDQPRERLDSFNGD-PKAEP-ERFKEWKRMQRSI 147
Query: 555 KKINQERHSQRCDTELKLSVARRMKDEEGFYYPHNLDFRGRAYPMHPHLNHLSSDVCRGV 614
N + + + VA + D+E F+ P + D+RGR YP + LN +D + +
Sbjct: 148 DDFNAQLFQRNWRATETMFVANQY-DDEVFWIPWSFDYRGRVYPQNTQLNPQGTDFDKSL 206
Query: 615 LEFAEGRPLGKSGLRWLKIHLANLFSGGVEKLSHDGRLAFVENHLYEIFDSAENPINGSR 674
L FAE G+ WL H+ + G +KLSH+ R+A+ + + I AE+PI
Sbjct: 207 LLFAEE---GEVDEYWLAWHVCTTY--GNDKLSHNDRVAWTQENHELITIIAEDPIGAIS 261
Query: 675 WWLTAEDPFQCLAACINLSEALKSSSPHSVISHLPIHQDGSCNGLQHYAALGRNTLEAAA 734
W A +P+ LAACI + + + + S LPI D +C+GLQH +++ R+ + A
Sbjct: 262 LWEGAGEPWMFLAACIEYHACVITGAKQT--SGLPIGIDATCSGLQHLSSMTRDAVAAKQ 319
Query: 735 VNLVAGEK--PADVYSEIAVRVHEIMKRDSNKDPSKHPQALLAKILIDQVDRKLVKQTVM 792
VN++ G++ P+D Y +A + + +D S HP ++RK+ K+TVM
Sbjct: 320 VNVIRGDQDGPSDGYKTVAEAAIKYI-----EDESIHP----------YMNRKITKRTVM 364
Query: 793 TSVYGVTFVGAREQIKRRLEEKGHITDDRQLFAAACYAAKVTLTALGEIFEAARSIMGWL 852
T YGV+ AR I+ L + G + A V A+ E+F +M WL
Sbjct: 365 TVPYGVSRDSARAYIREALHDAGFDLSTKGRLGQVTDA--VYRKAVPEVFAGPVDVMNWL 422
Query: 853 GDCA-KVIASENQPVRWTTPLGLPVVQPYCKNERHLIRTSL--QVLALQREGNLVKIRKQ 909
A ++ + + + WTTP G VVQ K LI+T+L V ++ +Q
Sbjct: 423 QQTAMDLLDAGAEQIEWTTPSGFRVVQDIRKPRTKLIKTTLMGSVQQIRVADGFAGPDRQ 482
Query: 910 R--TAFPPNFVHSLDGS--HMMM 928
R A PN VHSLD S H+M
Sbjct: 483 RHKGAIAPNLVHSLDASLLHLMF 505
>gi|429864712|gb|AGA17876.1| RNA polymerase [Synechococcus phage P60]
Length = 780
Score = 173 bits (439), Expect = 4e-40, Method: Compositional matrix adjust.
Identities = 175/666 (26%), Positives = 285/666 (42%), Gaps = 92/666 (13%)
Query: 284 QAAVHIGMAIEQEIRIHSFLEKTKNYKRKKIIADTEEVLSKEKELLRKRVNSLIKSKRVM 343
+ A IG AIE E+++ + ++ K+ R V + R + + + R
Sbjct: 112 EVAASIGSAIEVELKLQWYQQQDKDLFRN--------VTNGFHHSTGTRQKATVYNLRFN 163
Query: 344 EAQKLLKNEETKPWGRDTQAKLGSRLVELLIET-AYVQHPVNPADYSPPDVRPAFRHRFK 402
+A + K WGR K+GS + + ET ++ K
Sbjct: 164 KA-----GIQWKGWGRTVHFKVGSWALRSITETTGWI---------------------IK 197
Query: 403 TILKHP-GQKTTKRYG---VVECDPLVLEGLDRSAKHMLIPYVPMLVPPKKWKGYNKGGY 458
+K P QK R+ + D L+ L+ S PM+ PP W +GGY
Sbjct: 198 ETIKMPRSQKCILRFSREFIGLRDALMQRALELS-----FCLWPMVCPPNDWTDEGRGGY 252
Query: 459 LFLPSYVMRTHGSRKQQEALKSVTGNCMKKVF--EALDTLGSTKWRVNKQVLSVLESIWV 516
L G+ + G+ + E L+ L +R+N +L+V +
Sbjct: 253 L-----TEEIRGTAPMIRKVGKPIGDSKQGTIPVEFLNNLQRQSYRINAAILAVANWCYD 307
Query: 517 SGGNIAGLV-----DRNDVLIPEKPLSEDMTEVQKWKWSVRKAKKINQERHSQRCDTELK 571
+ + + +R D + P +E ++WK R N + +
Sbjct: 308 NSRTVGKFIHDQPRERLDSFNGD-PKAEP-ERFKEWKRMQRSIDDFNAQLFQRNWRATET 365
Query: 572 LSVARRMKDEEGFYYPHNLDFRGRAYPMHPHLNHLSSDVCRGVLEFAEGRPLGKSGLRWL 631
+ VA + D+E F+ P + D+RGR YP + LN +D + +L FAE G+ WL
Sbjct: 366 MFVANQY-DDEVFWIPWSFDYRGRVYPQNTQLNPQGTDFDKSLLLFAEE---GEVDEYWL 421
Query: 632 KIHLANLFSGGVEKLSHDGRLAFVENHLYEIFDSAENPINGSRWWLTAEDPFQCLAACIN 691
H+ + G +KLSH+ R+A+ + + I AE+PI W A +P+ LAACI
Sbjct: 422 AWHVCTTY--GNDKLSHNDRVAWTQENHELITIIAEDPIGAISLWEGAGEPWMFLAACIE 479
Query: 692 LSEALKSSSPHSVISHLPIHQDGSCNGLQHYAALGRNTLEAAAVNLVAGEK--PADVYSE 749
+ + + + S LPI D +C+GLQH +++ R+ + A VN++ G++ P+D Y
Sbjct: 480 YHACVITGAKQT--SGLPIGIDATCSGLQHLSSMTRDAVAAKQVNVIRGDQDGPSDGYKT 537
Query: 750 IAVRVHEIMKRDSNKDPSKHPQALLAKILIDQVDRKLVKQTVMTSVYGVTFVGAREQIKR 809
+A + + +D S HP ++RK+ K+TVMT YGV+ AR I+
Sbjct: 538 VAEAAIKYI-----EDESIHP----------YMNRKITKRTVMTVPYGVSRDSARAYIRE 582
Query: 810 RLEEKGHITDDRQLFAAACYAAKVTLTALGEIFEAARSIMGWLGDCA-KVIASENQPVRW 868
L + G + A V A+ E+F +M WL A ++ + + + W
Sbjct: 583 ALHDAGFDLSIKGRLGQVTDA--VYRKAVPEVFAGPVDVMNWLQQTAMDLLDAGAEQIEW 640
Query: 869 TTPLGLPVVQPYCKNERHLIRTSL--QVLALQREGNLVKIRKQR--TAFPPNFVHSLDGS 924
TTP G VVQ K LI+T+L V ++ +QR A PN VHSLD S
Sbjct: 641 TTPSGFRVVQDIRKPRTKLIKTTLMGSVQQIRVADGFAGPDRQRHKGAIAPNLVHSLDAS 700
Query: 925 --HMMM 928
H+M
Sbjct: 701 LLHLMF 706
>gi|125999968|ref|YP_001039639.1| DNA-dependent RNA polymerase-like protein [Erwinia amylovora phage
Era103]
gi|431810449|ref|YP_007237531.1| DNA-directed RNA polymerase [Erwinia phage phiEa100]
gi|121621824|gb|ABM63398.1| DNA-dependent RNA polymerase-like protein [Enterobacteria phage
Era103]
gi|311875209|emb|CBX44468.1| DNA-directed RNA polymerase [Erwinia phage phiEa1H]
gi|311875330|emb|CBX45071.1| DNA-directed RNA polymerase [Erwinia phage phiEa100]
Length = 885
Score = 173 bits (438), Expect = 4e-40, Method: Compositional matrix adjust.
Identities = 154/594 (25%), Positives = 256/594 (43%), Gaps = 73/594 (12%)
Query: 417 GVVECDPLVLEGLDRSAKHMLIPYVPMLVPPKKWKGYNKGGYLFLPSYVMRTHGSRKQQE 476
GV + +E M Y P +VPP+ WK GG+ + R + + +
Sbjct: 227 GVADNVNAWIEAFKEHVSVMSPAYGPCVVPPRDWKTPFNGGF-HTEAVASRVRFVKGRTD 285
Query: 477 ALKSVTGNCMKKVFEALDTLGSTKWRVNKQVLSVLESIWVSGGNI-----AGLVDRNDVL 531
++ +T M KV++A++ L S KW +N L + I + A ++ R++
Sbjct: 286 HVRKLTQKQMPKVYKAINFLQSVKWSINTDTLETAQEILAKNLGLGMPSFAPIITRDNKP 345
Query: 532 IPEKPLS----------EDMTEVQ-----KWKWSVRKAKKINQERHSQRCDTELKLSVAR 576
PL + +T Q WK K + +R S+ L+ A
Sbjct: 346 ACPLPLEFQHLRGEELRQSLTPTQWDSFLAWKGDCSKLYTMETKRTSKASAVARMLNQAS 405
Query: 577 RMKDEEGFYYPHNLDFRGRAYPMHPHLNHLSSDVCRGVLEFAEGRPLGKS-GLRWLKIHL 635
+ E Y+ + +D RGR Y ++ S D+ + +L +G+ L S L W +
Sbjct: 406 DLAKFESIYFVYAMDSRGRVYVQSSGVSPQSDDLGKSLLRSTKGKTLDSSEALHWFLVLG 465
Query: 636 ANLFSGGVEKLSHDGRLAFV--ENHLYEIFDSAENPINGSRWWLTAEDPFQCLAACINLS 693
NL+ G +K D R++ V E+ + D A +P+ R WL+A++P+Q LA +
Sbjct: 466 GNLW--GWDKKPFDVRVSHVLDEDFADMVRDVATDPLT-FRNWLSADEPWQFLAWAKEYA 522
Query: 694 ---EALKSSSPHSVISHLPIHQDGSCNGLQHYAALGRNTLEAAAVNLVAGEKPADVYSEI 750
+A+ + +++LP+HQDGSC+G+QHY+A+ R+ A AVNL+ + P D+Y E+
Sbjct: 523 RYLDAVDDGTSAEFVTYLPVHQDGSCSGIQHYSAMLRDKTGAKAVNLMPSDTPQDIYGEV 582
Query: 751 AVRVHEIMKRDSNKDPSKHPQ-----------ALLAKILIDQVD-----RKLVKQTVMTS 794
A V I K + D + Q ++K + + D R L K+ VMT
Sbjct: 583 AKVV--IRKNKAIADMADSEQEGYSIGKMKLSVAVSKAMAESWDAIGITRSLTKKPVMTL 640
Query: 795 VYGVTFVGAREQIK-----------RRLEEKG------HITDDRQLFA-----AACYAAK 832
YG T + RE I R+ + +G H + +L A Y
Sbjct: 641 PYGSTRITCRESIDDYLVSLEEDELRKAKAEGRERNAVHPFESEELEGLSYKNALNYMTS 700
Query: 833 VTLTALGEIFEAARSIMGWLGDCAKVIASENQPVRWTTPLGLPVVQPYCKNERHLIRTSL 892
+ ++ E+ A M + A+ + N+ + WTTP G V Q + + + L
Sbjct: 701 LVWPSISEVVRAPVVAMKAIRQLARAVTKLNEGLYWTTPTGFIVEQRIYATDNLRVSSYL 760
Query: 893 QV---LALQREGNLVKIRKQRTAFPPNFVHSLDGSHMMMTAVACRDAGLHFAGL 943
++L E + A PNFVHSLD +H++ A DAGL F +
Sbjct: 761 MGRVRMSLTVETETIDEAAMMGAAAPNFVHSLDAAHLISAVCAMADAGLEFVAV 814
>gi|11466088|ref|NP_049543.1| RNA polymerase [Neurospora intermedia]
gi|4877818|gb|AAD31445.1| RNA polymerase [Neurospora intermedia]
Length = 896
Score = 172 bits (435), Expect = 1e-39, Method: Compositional matrix adjust.
Identities = 127/400 (31%), Positives = 196/400 (49%), Gaps = 46/400 (11%)
Query: 572 LSVARRMKDEEGFYYPHNLDFRGRAYPMHPHLNHLSSDVCRGVLEFAEGRPLGKSGLRWL 631
+S+A+ MKD + FY +D+RGR Y LN ++ R +L F EG+ L GL+ L
Sbjct: 415 ISIAKLMKDVKEFYMTVFIDWRGRFYTSSCALNIQGGELARSLLLFKEGQKLNDIGLKAL 474
Query: 632 KIHLANLFSGGVEKLSHDGRLAFVENHLYEIFDSAENPINGSRWWLTAEDPFQCLAACIN 691
KI+ AN F G++K S + RL +VE +L++I D I+ W A++P LA +
Sbjct: 475 KIYTANAF--GLDKRSKEERLDWVEQNLHKIID-----IDNYEIWREADEPLLFLACALE 527
Query: 692 LSEALKSSSPHSVISHLPIHQDGSCNGLQHYAALGRNTLEAAAVNLVA---GEKPADVYS 748
L P + ISHLPI D +CNGLQH +A+ + + A VNL+ + P D+YS
Sbjct: 528 LKGY--KEDP-NFISHLPILMDATCNGLQHLSAMVNDFVLAEKVNLLKSTENDNPRDLYS 584
Query: 749 EIAVRVHEIMKRDSNKDPSKHPQALLAKILIDQVDRKLVKQTVMTSVYGVTFVGAREQIK 808
E+ + K++ + + L +I V+R LVK+ +MT YG T G +QI
Sbjct: 585 EVIPHI----KQEILEASKSYEHTNLERI---NVERCLVKRGLMTITYGATERGIYDQIV 637
Query: 809 RRLEEKGHITDDRQLFAAACYA-----------------AKVTLTALGEIFEAARSIMGW 851
+ +K L + +K+ +L +I ++M +
Sbjct: 638 SKFFQKDEWNKTAGLHFVCIDSDIAPKDVVFTQKNILLWSKIIYNSLFKIHPNLNTLMVY 697
Query: 852 LGDCAKVIASENQPVRWTTPLGLPVVQPYCK----NERHLIRTSLQVLALQREGNLVKIR 907
KV+ + PV W TP GL + Q Y K NE + + L L R+ + I
Sbjct: 698 FNSIVKVLCELDLPVNWVTPYGLVIQQKYNKFTKYNETTYVASKRYKLVL-RKADTTSIS 756
Query: 908 KQR--TAFPPNFVHSLDGSHMMMTAVACRDAG--LHFAGL 943
KQ+ AF PNFVHS+DGS++++ RD G ++FA +
Sbjct: 757 KQKQIQAFIPNFVHSMDGSNIVLLIKTIRDEGRKINFASI 796
>gi|229604949|ref|YP_002875649.1| putative RNA polymerase [Vibrio phage VP93]
gi|227976994|gb|ACP44096.1| putative RNA polymerase [Vibrio phage VP93]
Length = 816
Score = 171 bits (434), Expect = 1e-39, Method: Compositional matrix adjust.
Identities = 194/805 (24%), Positives = 332/805 (41%), Gaps = 121/805 (15%)
Query: 175 FNLLRRRQVKQETEAWERMVDEYKELEA---------KMIEKRLAPNLPHIKGLFLGWFG 225
++ + R+ +E A + ++E + EA +E A L ++ L +
Sbjct: 1 MSVTKNRETFEEKAARQERIEETFKTEAIERSRKAVLDALENGRATELTPVQRLLNAAYD 60
Query: 226 PLSEAIEREQKMQRTKKQKAAYAPHIELLPADKVAVIVMHKMMGLVMAGHEDRCVQVVQA 285
+S I+ E K +T+ A Y +I L+ +D + V+ ++ ++ + A
Sbjct: 61 GVSARID-ELKASKTRGVGAKYRGYIRLVSSDVLTVMTLNTLLNNI-------------A 106
Query: 286 AVHIGMAIEQEIRIHSFLEKTKNYKRKKIIADTEEVLSKEKELLRKRVNSLIKSKRVMEA 345
+ +GM+ I S + +IIA EV++ RV +K +
Sbjct: 107 STELGMS-----SIQSLGTSLGRSVQSEIIAQNAEVVAPA---YMNRVYEYLKEHKTRSQ 158
Query: 346 QKLLKNE---------ETKPWGRDTQAKLGSRLVELLIETAYVQHPVNPADYSPPDVRPA 396
+L+ ET PW T +G L++ + +T + P +
Sbjct: 159 SHILRTFRAASANVKLETDPWDNTTCFNVGRLLLQCVHDTGIFEWVQGPKGLLYAEPAEE 218
Query: 397 FRHRFKTILKHPGQKTTKRYGVVECDPLVLEGLDRSAKHMLIPYVPMLVPPKKWKGYNKG 456
+ F +L+H ++ Y PM+VPP + + G
Sbjct: 219 LQGVFSDVLEHAD--------------------------TMVHYPPMIVPPVRHEDIYNG 252
Query: 457 GYLFLPSYVMRTHGSRKQQEALKSVTGNCMKKVFEALDTLGSTKWRVNKQVLSVLESIWV 516
GYL T SR+ + + + + +++V EA + +NK E +V
Sbjct: 253 GYL--------TDLSRRHTYSNRHIKRSRLREVNEAFKQANGIRQALNK----AQEVPYV 300
Query: 517 SGGNIAGLVDRN-----DVLIP---EKP-------------LSEDMTEV-QKWKWSVRKA 554
+I LV + DV IP +KP SED E + WK +R+
Sbjct: 301 VNQSIYDLVLQAKATGFDVGIPSHHQKPQPKFHLHGTDKADWSEDDQEAFEVWKTQMRQW 360
Query: 555 KKINQERHSQRCDTELKLSVARRMKDEEGFYYPHNLDFRGRAYPMHPHLNHLSSDVCRGV 614
++R SQ + L + RR DE+ Y+P +D+R R Y HLN SD+ + +
Sbjct: 361 YTKERKRVSQIRQLAITLDLCRRFMDEDALYFPTCVDWRYRLY-FKSHLNPQGSDIQKAL 419
Query: 615 LEFAEGRPLGKSGLRWLKIHLANLFSGGVEKLSHDGRLAFVENHLYEIFDSAENPINGSR 674
L +PLGK GL WLK H+A F G +K + R + E + I + ++P+N
Sbjct: 420 LLLGRKKPLGKRGLFWLKSHVATCF--GFDKPLFEERAKWTEERIDAIREWVKDPLNNED 477
Query: 675 WWLTAEDPFQC-LAACINLSEALKSSSPHSVISHLPIHQDGSCNGLQHYAALGRNTLEAA 733
+ D F C LAA I L EAL S P S++ + D + +G QH++A+ R+ +
Sbjct: 478 F--KDADEFWCMLAASIQLIEALDSPDPEKYESNIAVALDATNSGGQHFSAMLRDPIGGK 535
Query: 734 AVNLV--AGEKPADVYSEIAVRVHEIMKRDSNKDPSKHPQALLAKILIDQVDRKLVKQTV 791
NL AD+Y ++ R +K + +DP QA ++ + R + K+
Sbjct: 536 LTNLFWDGNLTKADLYMDVKQRTDSKIKV-ALRDPETIVQAHYWT--LNPITRSMTKRPT 592
Query: 792 MTSVYGVTFVGAREQIKRRLEEKGH-ITDDRQLFAAACYAAKVTLTALGEIFEAARSIMG 850
MT Y T + I ++G+ TD+ LF + + + ++ E AA M
Sbjct: 593 MTYFYSATLRSCTDYIFLGAADEGYEGTDEYTLFKLCSFVSPLMRDSINEAMPAAARGMD 652
Query: 851 WLGDCAKVIASENQPVRWTTPLGLPVVQPYCKNERHLIRTSLQVLALQRE--GNLVKIRK 908
+L + + E+ ++W T LG V+ YC RH R ++ + + + N R
Sbjct: 653 YLKAVCQRVPMEHH-LQWKTVLGGLVINRYCN--RHETRVKVRSMGINQVVLYNFDYERN 709
Query: 909 QR----TAFPPNFVHSLDGSHMMMT 929
R + PNF+H D SH+MMT
Sbjct: 710 HRQKAVSGISPNFIHQGDSSHLMMT 734
>gi|418488977|ref|YP_007002889.1| putative DNA-dependent RNA polymerase [Pantoea phage LIMElight]
gi|308071873|emb|CBW54794.1| putative DNA-dependent RNA polymerase [Pantoea phage LIMElight]
Length = 818
Score = 171 bits (432), Expect = 2e-39, Method: Compositional matrix adjust.
Identities = 189/779 (24%), Positives = 333/779 (42%), Gaps = 74/779 (9%)
Query: 181 RQVKQETEAWERMVDEYKELEAKMIEKRLAPNLPHIKGLFLGWFGPLSEAIEREQKMQRT 240
RQ++ E +A R +D ++ ++ A L + L F +S+ I++ K ++
Sbjct: 17 RQLEIENKARTRAIDRSRKAVKDALDSGRASELLPVSRLISAAFSTVSDEIDK-IKAEKA 75
Query: 241 KKQKAAYAPHIELLPADKVAVIVMHKMMGLVMAGHEDRCVQVVQAAVH-IGMAIEQEIRI 299
Y ++L+ D +A M ++ + HE + QA + +G ++ E+
Sbjct: 76 PGVGGKYRKFLKLVSTDVLATGSMVYVLDSLC--HESQAKSSAQALMAGLGRFVQAEV-- 131
Query: 300 HSFLEKTKNYKRKKIIADTEEVLSKEKELLRKRVNSLIKSKRVMEAQKLLKNEETKPWGR 359
R IA + + + K S R + A E PW
Sbjct: 132 ---------LNRNLEIAAPAYINRVHEYMKEKHTRSQSHIMRTLRASADAVKLEHDPWSN 182
Query: 360 DTQAKLGSRLVELLIETAYVQHPVNPADYSPPDVRPAFRHRFKTILKHPGQKTTKRYGVV 419
+G L++ + ET + H + PG + K
Sbjct: 183 TECIAVGRLLMQAVWETGLFKW---------------HSHSNQMNYLLPGDQLEK----- 222
Query: 420 ECDPLVLEGLDRSAKHMLIPYVPMLVPPKKWKGYNKGGYLF----LPSYVMRTHGSRKQQ 475
++ + + S+ M+ P PM+VPP+ + GGY+ +Y R +++++
Sbjct: 223 ----VLTDVVTHSSMMMIAP--PMIVPPQDHTTIHDGGYMTDIDRRGTYKNRHITNKQRR 276
Query: 476 EALKSVTGNCMKKVFEALDTLGSTKWRVNKQVLSVLESIWVSGGNIAGLVD--------- 526
+ K + + + A++ + +RVN+ VL +++ G I G+
Sbjct: 277 DVAKQFASDEAQPLRAAMNKAQNVPYRVNRSVLGWVQAARAQGIGI-GMPSTKGRPKPEW 335
Query: 527 RNDVLIPEKPLSEDMTEVQKWKWSVRKAKKINQERHSQRCDTELKLSVARRMKDEEGFYY 586
R D + E+ + ++ + ++WK R+ ++R SQ + + + KDE+ Y+
Sbjct: 336 RLDGIPKEQYDARELEDFEEWKAVTRQWYTEERKRVSQLRGMAMTIDMCEEYKDEQVLYF 395
Query: 587 PHNLDFRGRAYPMHPHLNHLSSDVCRGVLEFAEGRPLGKSGLRWLKIHLANLFSGGVEKL 646
P +D+R R Y LN SD+ + +LEF GRPLG GL WLK+++A F G +K
Sbjct: 396 PTCVDWRYRLY-FKSALNPQGSDLQKALLEFGTGRPLGDRGLHWLKVNVATTF--GYDKP 452
Query: 647 SHDGRLAFVENHLYEIFDSAENPINGSRWWLTAEDPFQCLAACINLSEALKSSSPHSVIS 706
+ R A+V+ H EI A+ P + A+ P+ LAACI L A++S P +S
Sbjct: 453 LFEERAAWVDLHYAEIERVADAPFETDSF-KNADSPWCFLAACIELVNAVRSGCPAEYVS 511
Query: 707 HLPIHQDGSCNGLQHYAALGRNTLEAAAVNLV--AGEKPADVYSEIAVRVH-EIMKRDSN 763
H P+ D + +G QH++A+ R+ + NL + AD+Y + R +++ N
Sbjct: 512 HAPVAMDATNSGGQHFSAMLRDEIGGRLTNLFWNGNTEKADLYMNVKERTDSKVIVAQRN 571
Query: 764 KDPSKHPQALLAKILIDQVDRKLVKQTVMTSVYGVTFVGAREQIK-RRLEEKGHITDDRQ 822
D QA + +++ R + K+ MT Y T + I L+E D
Sbjct: 572 ADTV--VQATYWR--ENEITRSMTKRPAMTFFYSATVRSCSDYIMLGALDEGYQPLQDFS 627
Query: 823 LFAAACYAAKVTLTALGEIFEAARSIMGWLGDCAKVIASENQPVRWTTPLGLPVVQPYCK 882
+ + + A + ++ E AA M + + I EN ++W TPLG ++ Y
Sbjct: 628 MMKLSGFLAPLMRESIEEAMPAAAKAMKFAQQVCRTIPLENH-LQWNTPLGGLIINRYTT 686
Query: 883 NE--RHLIRTS--LQVLALQREGNLVKIRKQRTAFPPNFVHSLDGSHMMMTAVACRDAG 937
E R IR+ QV+A R +L RK + PNFVH D +H+MM V R +G
Sbjct: 687 TEEKRVNIRSMGLTQVVAYNRNYDLNNRRKAASGIAPNFVHGQDSTHLMM--VILRHSG 743
>gi|76809902|ref|YP_333056.1| DNA-dependent RNA polymerase [Burkholderia pseudomallei 1710b]
gi|254261887|ref|ZP_04952941.1| DNA-directed RNA polymerase [Burkholderia pseudomallei 1710a]
gi|76579355|gb|ABA48830.1| DNA-dependent RNA polymerase [Burkholderia pseudomallei 1710b]
gi|254220576|gb|EET09960.1| DNA-directed RNA polymerase [Burkholderia pseudomallei 1710a]
Length = 769
Score = 169 bits (429), Expect = 5e-39, Method: Compositional matrix adjust.
Identities = 144/505 (28%), Positives = 224/505 (44%), Gaps = 69/505 (13%)
Query: 442 PMLVPPKKWKGYNK-GGYLFLPSYVMRTHGSRKQQEALKSVTGNCMKKVFEALDTLGSTK 500
PMLVPP W ++ GGYL + G+R+ E+ + + AL+ L +T+
Sbjct: 224 PMLVPPVPWTTFSTHGGYLH--DQIPAVRGTRRPIES---------EVIVSALNALQATR 272
Query: 501 WRVNKQVLSVLESIWVSGGNIAGLVDRNDVLIPEKPLSEDMTEVQKWKWSVRKAKKINQE 560
+RVN++VL V ++ + ++ G V + E M R+AK I
Sbjct: 273 FRVNRRVLEVAQTFRTNAEDMGGAVINGRYIETRHDTPESM----------RRAKTIR-- 320
Query: 561 RHSQRCDTELKLSVARRMKDEEGFYYPHNLDFRGRAYPMHPHLNHLSSDVCRGVLEFAEG 620
+ L LS + +E+ FY+P NLD+RGR YP ++ +D+C+G LEFA+G
Sbjct: 321 -------SALTLSAFAELVNEDAFYFPWNLDWRGRMYPATSLISPQGADLCKGCLEFADG 373
Query: 621 RPLGKSGLRWLKIHLANLFSGGVEKLSHDG---------RLAFVENHLYEIFDSAENPIN 671
LG+ G +WL IHL NL G +K++ G R A+ + I A +P N
Sbjct: 374 TSLGRDGGKWLAIHLCNL--AGEDKVTVGGKKVHRTPDEREAWTLSQESMILRVAADPRN 431
Query: 672 GSRWWLTAEDPFQCLAACINLSEALKSSSPHSVISHLPIHQDGSCNGLQHYAALGRNTLE 731
W+ A+ P+Q LAAC + + S L DGSC+G+Q A + R+
Sbjct: 432 NME-WMKADKPWQFLAACFEWVGYREEGD--AFRSRLAGALDGSCSGVQMLAGMTRDASA 488
Query: 732 AAAVNLVAGEKPADVYSEIAVRVHEIMKRDSNKDPSKHPQALLAKILI---DQVDRKLVK 788
A VNLV + D Y +A + + + A +A++ +DR L+K
Sbjct: 489 GAMVNLVPAPRGDDYYGRMA----DALSKRLCGLVDHADAATMARLQFWAEKSIDRDLLK 544
Query: 789 QTVMTSVYGVTFVGAREQIKRRLEEKGHITDDRQLFAAACYAAKVTLTALGEIFEAARSI 848
MT VY EQ+ + K + ++ AA A + A G + +
Sbjct: 545 APSMTKVYSAGTYTFGEQV----QNKTGAPEAESMWLAAQINACFSDVAPGML-----NA 595
Query: 849 MGWLGDCAKVIASENQPVRWTTPLGLPVVQPYCKNERHLIRTSLQVLALQRE-------G 901
M +L + V+ + P+ W TP GL V Q + T + +++ G
Sbjct: 596 MAYLQAVSDVMTAAGMPLVWRTPAGLRVEQARTCTRSVPLETQIGGPESRKQRRFTVDTG 655
Query: 902 NLVKIRKQRTAFPPNFVHSLDGSHM 926
+L K QR PNFVH +D SHM
Sbjct: 656 DLSK-NDQRAGVAPNFVHGVDASHM 679
>gi|291335757|gb|ADD95360.1| T7-like RNA polymerase [uncultured phage MedDCM-OCT-S05-C243]
Length = 769
Score = 169 bits (427), Expect = 1e-38, Method: Compositional matrix adjust.
Identities = 139/515 (26%), Positives = 235/515 (45%), Gaps = 57/515 (11%)
Query: 442 PMLVPPKKWKGYNKGGYLFLPSYVMRTHGS-RKQQEALKSVTGNCMKKVFEALDTLGSTK 500
PML+PP+ W GGY + + R H R+ A + G + ++ +
Sbjct: 241 PMLIPPRNWHSLQDGGYYL--NDLTRCHDFIRRSNHA--PIQGEI---PYLFINKIQQVS 293
Query: 501 WRVNKQVLSVLESIWVSGGNIAGLVDRNDVLIPEKPLSEDMTEVQKWKWSVRKAKKINQE 560
+++N ++ V + + G ++ + +P KP E + W+ R+A ++
Sbjct: 294 YKLNPFIVEVAKELEERGISVGKFRPVIEYEMPPKPPEEASKDT--WREWRRQAAIVHTA 351
Query: 561 RHSQR---CDTELKLSVARRMKDEEGFYYPHNLDFRGRAYPMHPHLNHLSSDVCRGVLEF 617
R ++ C T + + V R +D+ +Y P + D+RGR YP+ L +D + ++ F
Sbjct: 352 RKNETRKACRTRMTMDVVREFEDK-VYYIPWSFDYRGRVYPIPNLLTPQDTDFGKSLIIF 410
Query: 618 AEGRPLGKSGLRWLKIHLANLFSGGVEKLSHDGRLAFVENHLYEIFDSAE----NPINGS 673
EG + K G+ W+K L+ S G+ K + + R+A++++ YE E +P+
Sbjct: 411 NEGTKITKKGMEWIKFQLST--SYGLSKATMEERIAWIDD--YENRALVERVWRDPVGNV 466
Query: 674 RWWLTAEDPFQCLAACINLSEALKSSSPHSVISHLPIHQDGSCNGLQHYAALGRNTLEAA 733
W A+DP+ LAAC +E + H +HLP+ D +C+GLQ A L ++ A
Sbjct: 467 ADWEHADDPWLFLAAC---NEWYELHYEHRFHTHLPVAVDATCSGLQILAGLAKDASTAR 523
Query: 734 AVNLVAGEKPADVYSEIAVRVHEIMKRDSNKDPSKHPQALLAKILIDQVDRKLVKQTVMT 793
VN++ +KP D Y+ IA R E + P+ L DRK K+ VMT
Sbjct: 524 MVNVLGSDKPQDAYATIASRSMEAI-----------PERLRP-----YWDRKATKRCVMT 567
Query: 794 SVYGVTFVGAREQIKRRLEEKGHITDDRQLFAAACYAAKVTLTALGEIFEAARSIMGWL- 852
Y R I+ ++K D +L +C +A A+ E+ A +M W+
Sbjct: 568 IPYNAKPFSNRSYIREAFKDKDVDVDKEEL--TSCVSA--VRAAMDEVVPGAMRVMKWIE 623
Query: 853 GDCAKVIASENQPVRWTTPLGLPVVQPYCKNERHLI------RTSLQVLALQREGNLVKI 906
+ A+ I + Q ++WTTP G V Q K R I R S+ V ++ V +
Sbjct: 624 TEVARAIKAGAQEIKWTTPSGFVVKQRLMKVAREKIQCQLMGRISISVAGAEKG---VDL 680
Query: 907 RKQRTAFPPNFVHSLDGS--HMMMTAVACRDAGLH 939
+ + A PN +HSLD S H+ + V A +H
Sbjct: 681 KHHKNATAPNLIHSLDASLLHLAVMDVNFPIALIH 715
>gi|338827175|ref|YP_004539106.1| hypothetical protein LIMEzero_ORF33 [Pantoea phage LIMEzero]
gi|332800724|emb|CBY88564.1| hypothetical protein [Pantoea phage LIMEzero]
Length = 810
Score = 168 bits (426), Expect = 1e-38, Method: Compositional matrix adjust.
Identities = 148/512 (28%), Positives = 226/512 (44%), Gaps = 35/512 (6%)
Query: 440 YVPMLVPPKKWKGYNKGGYLFLPS----YVMRTHGSRKQQEALKSVTGNCMKKVFEALDT 495
Y PMLVPP + + G P Y + + +R++ ALK V E
Sbjct: 232 YPPMLVPPVQIAEDGRSGMWQSPGQRDQYRVISRMNRREYRALKIDP----TPVIEPCMA 287
Query: 496 LGSTKWRVNKQVLSVLES--IWVSGGNIAGLVDRNDVLIPE------------KPLSEDM 541
L S +R+N VL +L+ V G + + + IP +P+ + M
Sbjct: 288 LSSVPYRINPLVLELLQRSRTDVMGLPVMPVEPKLPFQIPAGVTFAQYISKFPEPMQQQM 347
Query: 542 -TEVQKWKWSVRKAKKINQERHSQRCDTELKLSVARRMKDEEGFYYPHNLDFRGRAYPMH 600
E ++K R ++ SQ ++ A+R + + Y P D RGR Y
Sbjct: 348 DAEAHEFKVRTRIYHTNMRKFMSQMMALNAAVAEAQRYAEFDKVYLPTYADTRGRIY-YS 406
Query: 601 PHLNHLSSDVCRGVLEFAEGRPLGKSGLRWLKIHLANLFSGGVEKLSHDGRLAFVENHLY 660
LN D R +LE AE LG GL WLK+H+AN F G + D R + + L
Sbjct: 407 STLNPQGIDGVRALLELAEPVALGDDGLYWLKVHIANSF--GYDATDFDDRAKWTDKALP 464
Query: 661 EIFDSAENPINGSRWWLTAEDPFQCLAACINLSEALKSSSPHSVISHLPIHQDGSCNGLQ 720
+ ++ P +W A+ P AA + L A+ S +P + + + D +C+GLQ
Sbjct: 465 RLREACRIPEAYDSFWSEADSPITAWAAAVELLRAIDSGNPATYMCRVVTQWDATCSGLQ 524
Query: 721 HYAALGRNTLEAAAVNLV-AGEKPADVYSEIAVRVHEIMKRDSNKDPSKHPQALLAKILI 779
H +A+ R+++ AAVNL+ + + AD+Y ++A E ++R S Q LL
Sbjct: 525 HLSAMLRDSVGGAAVNLLDSPGRKADIYLKVADSALEGLRRSELVSSSPLGQWLLRV--- 581
Query: 780 DQVDRKLVKQTVMTSVYGVTFVGAREQIKRRL-EEKGHITDDRQLFAAACYAAKVTLTAL 838
V R K+ VMT VYG T G + L E K + + +L A + A + A+
Sbjct: 582 -GVPRAWAKKPVMTYVYGATKHGMIDYYCLMLRESKTPLPEGFRLMQCATFIANLMWDAI 640
Query: 839 GEIFEAARSIMGWLGDCAKVIASENQPVRWTTPLGLPV---VQPYCKNERHLIRTSLQVL 895
+ AA +M WL + A E + V +T P GL V Q Y + L + +
Sbjct: 641 PRVVPAAARLMAWLQEIANTTGKEGEYVTFTAPSGLRVPNQYQMYRETSMRLNLLGVHAI 700
Query: 896 ALQREGNLVKIRKQRTAFPPNFVHSLDGSHMM 927
L+ + RK AF PNFVH++D SHMM
Sbjct: 701 QLREAQDRPDPRKCEAAFAPNFVHAMDASHMM 732
>gi|1236340|gb|AAB01082.1| RNA polymerase, partial [Acanthamoeba castellanii]
Length = 157
Score = 168 bits (425), Expect = 1e-38, Method: Compositional matrix adjust.
Identities = 80/155 (51%), Positives = 109/155 (70%), Gaps = 6/155 (3%)
Query: 794 SVYGVTFVGAREQIKRRLEEKGHITDDRQLFAAACYAAKVTLTALGEIFEAARSIMGWLG 853
SVYGVTF+GAR+QI+ L++KG ++DD +F A+ Y A T +++ E+F AR IM WL
Sbjct: 1 SVYGVTFIGARQQIENALKDKGKVSDD-DMFLASRYLATSTFSSIKEMFSGAREIMTWLS 59
Query: 854 DCAKVIASENQPVRWTTPLGLPVVQPYCK--NERHLIRTSLQVLALQREGN---LVKIRK 908
DCA +IA + +PV W TP+GLPVVQPY + + T+LQ + L +E N V RK
Sbjct: 60 DCATLIAKQGKPVTWVTPMGLPVVQPYRTKGKQTQTVVTALQNVMLVKEENDSLPVNTRK 119
Query: 909 QRTAFPPNFVHSLDGSHMMMTAVACRDAGLHFAGL 943
QRTAFPPN+VHSLD +HMM+TA+ C +AGL +A +
Sbjct: 120 QRTAFPPNYVHSLDSTHMMLTALQCHEAGLTYASV 154
>gi|451988638|gb|AGF91115.1| RNA polymerase [Synechococcus phage S-CBP2]
Length = 793
Score = 167 bits (424), Expect = 2e-38, Method: Compositional matrix adjust.
Identities = 138/497 (27%), Positives = 229/497 (46%), Gaps = 50/497 (10%)
Query: 442 PMLVPPKKWKGYNKGGYLFLPSY---VMRTH---GSRKQQEALKSVTGNCMKKVFEALDT 495
PML P W GGYL ++RT+ GS Q L + L+
Sbjct: 253 PMLCQPVDWSNDQIGGYLTAEGRFDRLVRTYSKVGSSLPQGDLP----------LQMLNN 302
Query: 496 LGSTKWRVNKQVLSVLESIWVSGGNIAGLVDRNDVLIPEKPLSEDMTE--VQKWKWSVRK 553
L +R+N+QV V E + + + G R++ P +E +E ++ +K + R+
Sbjct: 303 LQHQAYRLNRQVFEVAEHCFANFITV-GQFRRDEHQDPPSRPAEGASEETIKAYKVARRE 361
Query: 554 AKKINQERHSQRCDTELKLSVARRMKDEEGFYYPHNLDFRGRAYPMHPHLNHLSSDVCRG 613
+ +N + ++ T + VAR+ DE+ + P + D+RGR YP+ L +D +
Sbjct: 362 LEDVNAQLEAKNWRTTETMFVARKFIDEDRIWIPWSCDYRGRIYPITHCLTPQGTDFDKA 421
Query: 614 VLEFAEGRPLGKSGLRWLKIHLANLFSGGVEKLSHDGRLAFVENHLYEIFDSAENPINGS 673
+ FA+ P+ + WL +A + G++K + D R+ +V + I A+NPI+
Sbjct: 422 MFYFADEGPINEY---WLAFQVATTY--GLDKATMDERVEWVRANTELISTIAQNPIDTI 476
Query: 674 RWWLTAEDPFQCLAACINLSEALKSSSPHSVISHLPIHQDGSCNGLQHYAALGRNTLEAA 733
W E+P+ LAAC + + + S LP D +C+GLQH +A+ + + AA
Sbjct: 477 SLWRDVEEPWCFLAACFEYFDCCIACT--RATSGLPCGIDATCSGLQHLSAMTGDAVAAA 534
Query: 734 AVNLVAGEKPADVYSEIAVRVHEIMKRDSNKDPSKHPQALLAKILIDQVDRKLVKQTVMT 793
VN++ +KPAD Y +A + + P ++ Q L RK+ K+TVMT
Sbjct: 535 LVNVLPTDKPADGYKTVAEAAKQWL-------PEEYHQWLT---------RKVTKRTVMT 578
Query: 794 SVYGVTFVGAREQIKRRLEEKGHITDDRQLFAAACYAAKVTLTALGEIFEAARSIMGWLG 853
+ YGVT AR I L E G D RQ + + A+ ++F+ ++M +L
Sbjct: 579 TPYGVTRHSARGYIMGALAEAG--CDTRQEGLLTAFTTAIYEKAMNKVFQGPVNVMSFLQ 636
Query: 854 DCA-KVIASENQPVRWTTPLGLPVVQPYCKNERHLIRTSLQVL-----ALQREGNLVKIR 907
A +++ + ++WTTP G V Q K ++T L + A+ V +
Sbjct: 637 QSALRLMKEGREALQWTTPSGFVVYQDCRKPLTERVQTQLMGVGKITSAIYTGPGPVNVD 696
Query: 908 KQRTAFPPNFVHSLDGS 924
K + PN VHSLD S
Sbjct: 697 KHKACTAPNLVHSLDAS 713
>gi|374531627|ref|YP_005098186.1| T3/T7-like RNA polymerase [Pseudomonas phage Bf7]
gi|372001329|gb|AEX65868.1| T3/T7-like RNA polymerase [Pseudomonas phage Bf7]
Length = 803
Score = 167 bits (423), Expect = 2e-38, Method: Compositional matrix adjust.
Identities = 144/523 (27%), Positives = 246/523 (47%), Gaps = 63/523 (12%)
Query: 441 VPMLVPPKKWKGYNKGGYLFLPSYVMRTHGSRKQQEALKSVTGNCMKKVFEALDTLGSTK 500
+P + PPK W GG+ + + RT + +A +V + +V +AL+ + S
Sbjct: 225 LPCVEPPKPWVTPTDGGWHTMA--MRRTLPCMVRGQATATVE-DVGPRVLKALNKVQSVA 281
Query: 501 WRVNKQVLSVLESIWVSGGNIAGLVDRNDVLI-------PEKPLSE---------DMTEV 544
W VN+++L V E D DVL+ P+KPL DM E
Sbjct: 282 WEVNERILEVAEFA-------REHFDVQDVLVSDKRGGMPDKPLFMQADPVLKIVDMNEF 334
Query: 545 Q-----KWKWSVRKAKKINQERHSQRCDTELKLSVARRMKDEEGFYYPHNLDFRGRAYPM 599
+ +W+ R+ + R + T + VA + K + ++ +++D+R R Y
Sbjct: 335 ELAQFTEWRQEAREWHTQQKVRGAHAGSTNEAIRVANKYKGKP-LWFVYSVDYRSRFYAS 393
Query: 600 HPHLNHLSSDVCRGVLEFAEGRPLGKS-GLRWLKIHLANLFS-GGVEKLSHDGRLAFVEN 657
L+ +D+ + ++ FA P+ S GL W ++ AN ++ ++K D R +V +
Sbjct: 394 GQGLSPQGNDLSKALIHFARSAPIRTSAGLFWFRVAGANKWAVNKLDKQPLDVRAQWVID 453
Query: 658 HLYEIFDSAENPINGSRWWLTAEDPFQCLAACINLSEALKSSSPHSVISHLPIHQDGSCN 717
+ I A++PI+ R W A+ PFQ LA C + +++ P S + +P+ QDGSCN
Sbjct: 454 NADFICRIADDPIS-HREWTDADVPFQFLAWCFEYAAWVRN--PESFRTRIPLGQDGSCN 510
Query: 718 GLQHYAALGRNTLEAAAVNLVAGEKPADVYSEIAVRVHEIMKRDSNK-DPSKHPQALLAK 776
GLQH++A+ R+ + A NL+ D+Y +A I++ D ++ D +K ++
Sbjct: 511 GLQHFSAMLRDRVGGRATNLIPDRVQHDIYGLVATATAGIVQSDIDECDIAKRWKS---- 566
Query: 777 ILIDQVDRKLVKQTVMTSVYGVTFVGAREQIKRRLEEKGHIT--DDRQLFAAACYAAKVT 834
++ R LVK++VMT YG T R+ I + +KG D R+ AA + +
Sbjct: 567 ---HELSRSLVKRSVMTLPYGSTRHSCRDFIMKEYMDKGSAPEFDKRENEPAARWLSYRV 623
Query: 835 LTALGEIFEAARSIMGWLGDCAKVIASENQP-VRWTTPLGLPVVQPYCKNERHLIRTSLQ 893
+G++ R M WL + ++ + N P + W P G V Q Y + R ++R S
Sbjct: 624 WDGIGKVVVKGRQAMEWLQAASAIMCAGNAPHIEWRNPAGFLVRQRY--HAREMLRVSCH 681
Query: 894 VLALQR----------EGNLVKIRKQRTAFPPNFVHSLDGSHM 926
L+ +R EG+ R+ R PNFVHS D +H+
Sbjct: 682 SLSGKRIRINVQTFKDEGD---PRRHRNGIAPNFVHSCDAAHL 721
>gi|291235121|ref|XP_002737494.1| PREDICTED: CG4644-like, partial [Saccoglossus kowalevskii]
Length = 767
Score = 166 bits (421), Expect = 4e-38, Method: Compositional matrix adjust.
Identities = 91/208 (43%), Positives = 127/208 (61%), Gaps = 13/208 (6%)
Query: 644 EKLSHDGRLAFVENHLYEIFDSAENPINGSRWWLTAEDPFQCLAACINLSEALKSSSPHS 703
EK S RL + + + +I DSA+NP G++WW TA++P+Q L+ C+ +++A++S P
Sbjct: 569 EKNSLQERLEYADTIMDDILDSADNPTTGNKWWQTADEPWQTLSCCMEVAKAVRSPDPTK 628
Query: 704 VISHLPIHQDGSCNGLQHYAALGRNTLEAAAVNLVAGEKPADVYSEIAVRVHEIMKRDSN 763
ISHLP+HQDGSCNGLQHYAALGR+ + A VNL + P DVYS +A +V E D+
Sbjct: 629 FISHLPVHQDGSCNGLQHYAALGRDVIGAQQVNLHPFDVPQDVYSGVAQKVEEARAIDA- 687
Query: 764 KDPSKHPQALLAKILIDQ---VDRKLVKQTVMTSVYGVTFVGAREQIKRRLEEKGHITDD 820
A KI I+ V+RK+VKQTVMT VYGVT G QI ++L++ +
Sbjct: 688 --------ANGLKIAIELEGFVNRKIVKQTVMTVVYGVTKYGGHRQIVKQLKDLPDFPGN 739
Query: 821 RQLFAAACYAAKVTLTALGEIFEAARSI 848
R ++AA Y +LGE+F R I
Sbjct: 740 R-VWAAGGYLVTKVFQSLGEMFTKTREI 766
>gi|422936620|ref|YP_007006595.1| RNA polymerase [Escherichia phage phiKT]
gi|374713664|gb|AEZ65095.1| RNA polymerase [Escherichia phage phiKT]
Length = 823
Score = 164 bits (416), Expect = 2e-37, Method: Compositional matrix adjust.
Identities = 149/543 (27%), Positives = 239/543 (44%), Gaps = 68/543 (12%)
Query: 441 VPMLVPPKKWKGYNKGGY--LFLPSYVMR-THGSRKQQEALKSVTGNCMKKVFEALDTLG 497
+P + P W G GGY + S + R S Q + L + V ++TL
Sbjct: 229 LPFVEKPLDWTGIVGGGYHTARMQSTMPRCIKASPTQMDVLIKHRDDYKGTVVACINTLQ 288
Query: 498 STKWRVNKQVLSVLESIWVSGGNIAGLVDRN--DVLIPEKPLSEDMTEVQK-----WK-- 548
S +WR+NK++L V + + G +N D L ED TE K WK
Sbjct: 289 SVEWRINKRILEVQQQM------FRGFEPKNKPDALECHSKDVEDWTEADKSLHSHWKKE 342
Query: 549 ----WSVRKAKKINQERHSQRCDTELKLSVARRMKDEEGFYYPHNLDFRGRAYPMHPHLN 604
++ ++A++ RH+ LSVAR D ++ + D+RGR YP ++
Sbjct: 343 MARWYTEQRAERYAASRHA------YTLSVAREFADYPRIWFMYFADWRGRYYPATTGIS 396
Query: 605 HLSSDVCRGVLEFAEGRPLGKSGLRWLKIHLANLFSGGVEKLSHDGRLAFVENHLYEIFD 664
+D+ + +LEFA G+P+ L + G +K S R+ +V + I
Sbjct: 397 PQGTDISKSMLEFANGKPISDPIAEQFFFLLGST-KFGFDKGSISERVQWVHENHELIMA 455
Query: 665 SAENPINGSRWWLTAEDP---FQCLAACINLSEALKSSSPHSVISHLPIHQDGSCNGLQH 721
A+ P+ + +W D +Q LA C +E + P +S LP+ DG+CNGLQH
Sbjct: 456 CADEPLLHTDFWYREADKKTRYQFLAWCFEYAEYKRF--PAGFVSRLPVSLDGTCNGLQH 513
Query: 722 YAALGRNTLEAAAVNLVAGEKPADVYSEIAVRVHEIMKRDSNKDPSKHPQALLAK---IL 778
Y+A+ R+++ A A NL+ +P D+Y+++A V +++ S P+ P AL + +
Sbjct: 514 YSAMLRDSVGAKATNLLPANRPNDIYAQVAGVVTNLLESMS---PADFP-ALTRESKPLS 569
Query: 779 IDQVD------------RKLVKQTVMTSVYGVT------FVGAREQIKRRLEEKGHITDD 820
I +VD R LVK+ VMT YG F+ + EE TDD
Sbjct: 570 IYEVDFFRRGWLHHGISRSLVKRCVMTLPYGSKKFSMGRFIKGDYMLDIHPEE--FDTDD 627
Query: 821 RQLFAAACYAAKVTLTALGEIFEAARSIMGWLGDCAKVIASEN--QPVRWTTPLGLPVVQ 878
AA + + A+G + E A M + ++ I + + ++W + GLP+VQ
Sbjct: 628 YT--DAANFLGDIVWKAIGMVVEKAVGGMSYFQGTSRAITRKKDVEVIQWPSMTGLPIVQ 685
Query: 879 PYCKNER---HLIRTSLQVLALQREGNLVKIRKQRTAFPPNFVHSLDGSHMMMTAVACRD 935
Y K E +R L E + + PN VHSLD +H+ +A
Sbjct: 686 DYWKTEYVQFRSVRGGGARLKCLVETDKIDKLGHANGIAPNIVHSLDAAHLTFVTLAAAK 745
Query: 936 AGL 938
AG+
Sbjct: 746 AGI 748
>gi|19547987|gb|AAL87357.1| At1g68990/T6L1_17 [Arabidopsis thaliana]
Length = 305
Score = 161 bits (407), Expect = 2e-36, Method: Compositional matrix adjust.
Identities = 88/176 (50%), Positives = 119/176 (67%), Gaps = 7/176 (3%)
Query: 170 MKKRKFNLLRRRQVKQETEAWERMVDEYKELEAKMIEKRLAPNLPHIKGLFLGWFGPLSE 229
M +KF +L++RQVK ETE WER E +E+ A M E++LAPNLP++K LFLGWF P+
Sbjct: 127 MGAQKFYMLKQRQVKMETEEWERAARECREILADMCEQKLAPNLPYMKSLFLGWFEPVRN 186
Query: 230 AIEREQKMQRTKKQKAAYAPHIELLPADKVAVIVMHKMMGLVMAGHED-RCVQVVQAAVH 288
AI+ + + KK K YAP +E LPADK+AVI MHKMMGL+M E V++V AA
Sbjct: 187 AIQDDLDTFKIKKGKIPYAPFMEQLPADKMAVITMHKMMGLLMTNAEGVGIVKLVNAATQ 246
Query: 289 IGMAIEQEIRIHSFLEK--TKNYKRKKIIAD----TEEVLSKEKELLRKRVNSLIK 338
IG A+EQE+RI+SFL+K KN K I + +EE+++KE E RK+V L++
Sbjct: 247 IGEAVEQEVRINSFLQKKNKKNATDKTINTEAENVSEEIVAKETEKARKQVTVLME 302
>gi|372217683|ref|YP_005087365.1| RNA polymerase [Cyanophage P-SSP2]
gi|310005846|gb|ADP00231.1| RNA polymerase [Cyanophage P-SSP2]
Length = 733
Score = 160 bits (405), Expect = 3e-36, Method: Compositional matrix adjust.
Identities = 180/742 (24%), Positives = 313/742 (42%), Gaps = 133/742 (17%)
Query: 231 IEREQKMQRTKKQKA----AYAPHIELLPADKVAVIVMHKMMGLVMAGHEDRCVQVVQAA 286
++++ +++ KK A A P++ L + AVI V + + + VV
Sbjct: 11 LKKQDRIETIKKHGAGSMVALMPYLLALDTESQAVIAAKLTFDKVFSPRKKNQL-VVSVT 69
Query: 287 VHIGMAIEQEIRIHSFLEKTKNYKRKKIIADTEEVL---SKEKELLRKRVNSLIKSKRVM 343
IG AIE E ++ + E + A +E +K E RK + +++ ++
Sbjct: 70 DSIGSAIEAECQMQYYEELAP-----PLFAALKETYWHQAKGTEYKRKSMQTIMNKHDII 124
Query: 344 EAQKLLKNEETKPWGRDTQAKLGSRLVELLIETAYVQHPVNPADYSPPDVRPAFRHRFKT 403
KPW R+ + KLG L+ L ++ F++
Sbjct: 125 PW---------KPWTREWKVKLGGFLLNCLARSS---------------------GWFES 154
Query: 404 ILKHPGQKTTKRYGVVECDPLVLEGLDRSAKH---------MLIPYV-PMLVPPKKWKGY 453
+ K G K+ D V+ D KH + P PML+ P+ W
Sbjct: 155 VEKKIGNKS---------DAFVI-TTDEFNKHKEEIVRITELFSPLTKPMLIEPRDWTTL 204
Query: 454 NKGGYLFLPSYVMRTHGSRKQQEALKSVTGNCMKKVFEALDTLGSTKWRVNKQVLSV--- 510
+ GGY + + H ++ E L+ + G K ++ L+ + K+R++ ++ V
Sbjct: 205 DDGGYYL--NQLTNCHEMVRRGEQLR-IQG---KTTYQFLNQIQKVKYRLSDFIVGVAKE 258
Query: 511 LESIWVSGGNIAGLVDRNDVLIPEKPLSEDMTEVQKWKW----SVRKAKKINQERHSQRC 566
LE + G +++ IP KP D + K +W + K N+ R S C
Sbjct: 259 LEEKEIEVGKFRPVINHP---IPAKPADFDTNKESKKQWKREAGIAHNKNANEWRIS--C 313
Query: 567 DTELKLSVARRMKDEEGFYYPHNLDFRGRAYPMHPHLNHLSSDVCRGVLEFAEGRPLGKS 626
T + ++ R + ++ +Y P + D+RGRAYP+ L +D + +L F+E + +
Sbjct: 314 RTRMTMNCVREFEGKD-YYIPWSFDYRGRAYPIPSFLTPQDTDFGKSLLRFSEESEITED 372
Query: 627 GLRWLKIHLANLFSGGVEKLSHDGRLAFV---ENHLYEIFDSAENPINGSRWWLTAEDPF 683
G++WL +A + G++K + + RLA+V EN L I A +P+N W A++P+
Sbjct: 373 GMKWLAFQVATTY--GLDKATMEERLAWVGKRENILL-IIRVATDPVNNIGDWEAADEPW 429
Query: 684 QCLAACINLSEALKSSSPHSVI------SHLPIHQDGSCNGLQHYAALGRNTLEAAAVNL 737
Q LAAC HSV+ + LP+ D +C+GLQ A L R+ A VN+
Sbjct: 430 QFLAAC---------HEYHSVVMAGKETTGLPVATDATCSGLQILAGLARDKSTARLVNV 480
Query: 738 VAGEKPADVYSEIAVR-VHEIMKRDSNKDPSKHPQALLAKILIDQVDRKLVKQTVMTSVY 796
+ +KP D Y IA + + +I +R L DRK K+ VMT Y
Sbjct: 481 IPSDKPQDAYQVIADKSIKDIPER-----------------LRPYWDRKKTKRCVMTIPY 523
Query: 797 GVTFVGAREQIKRRLEEKGHITDDRQLFAAACYAAKVTLTALGEIFEAARSIMGWL-GDC 855
R+ I+ ++ + +L + A+ + +M W+ +
Sbjct: 524 NAKPFSNRQYIRDAFKDIDIEVEKEEL----TQIVQAVRNAMEVVVPGPMKVMRWIEQEV 579
Query: 856 AKVIASENQPVRWTTPLGLPVVQPYCKNERHLIR------TSLQVLALQREGNLVKIRKQ 909
+K I + + + W TP G V Q K + I+ T+L+V +E V +
Sbjct: 580 SKAIRNGAKDLMWVTPSGFRVTQKLMKQDWKRIQLQLFGTTNLKVSIPDKELG-VDLAHH 638
Query: 910 RTAFPPNFVHSLDGSHMMMTAV 931
+ A PN +HSLD S + ++A
Sbjct: 639 KNATAPNLIHSLDASLLHLSAT 660
>gi|156402875|ref|XP_001639815.1| predicted protein [Nematostella vectensis]
gi|156226946|gb|EDO47752.1| predicted protein [Nematostella vectensis]
Length = 686
Score = 160 bits (404), Expect = 4e-36, Method: Compositional matrix adjust.
Identities = 82/173 (47%), Positives = 111/173 (64%), Gaps = 5/173 (2%)
Query: 774 LAKILIDQVDRKLVKQTVMTSVYGVTFVGAREQIKRRLEEKGHITDDRQLFAAACYAAKV 833
+A +L D+V R++VKQTVMT VYGVTFVG R QI+R+L++ D+R LF A+ Y
Sbjct: 430 IATLLEDKVTRRVVKQTVMTIVYGVTFVGGRLQIERQLKDLD--LDERVLFEASAYLVHK 487
Query: 834 TLTALGEIFEAARSIMGWLGDCAKVIASENQPVRWTTPLGLPVVQPYCKNERHLIRTSLQ 893
++G++F A++I W A IA V W TPL L V QPYCK I+T LQ
Sbjct: 488 VFASIGQMFTRAKAIQDWFALSATHIAYTGHCVDWYTPLSLYVCQPYCKKAVKTIKTRLQ 547
Query: 894 VLALQREGNLVKI---RKQRTAFPPNFVHSLDGSHMMMTAVACRDAGLHFAGL 943
+ + +G + + RKQR AFPPNFVHSLD +HMM+TAV C+ AG++FA +
Sbjct: 548 GIEIPTQGFAMSVPDSRKQRAAFPPNFVHSLDSTHMMLTAVHCQRAGINFASV 600
Score = 90.9 bits (224), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 70/272 (25%), Positives = 124/272 (45%), Gaps = 26/272 (9%)
Query: 349 LKNE-ETKPWGRDTQAKLGSRLVELLIETAYVQHPVNPADYSPPDVRPAFRHRFKTILKH 407
LK E + PW T+ G L++ LI++ + N + + P F H ++
Sbjct: 169 LKQEIDDLPWA--TKLLCGCTLIDFLIQSVKID--ANLFNAKSESLLPGFYHSYEF---- 220
Query: 408 PGQKTTKRYGVVECDPLVLEGL-----DRSAKHMLIPYVPMLVPPKKWKGYNKGGYLFLP 462
+ ++ GV++ +V + D M +PMLVPP+ W+ GG+L P
Sbjct: 221 ---RERRKIGVIKPHSVVCKLFKGYLADHGDIAMPTTSLPMLVPPRPWRDIRDGGFLIQP 277
Query: 463 SYVMRTHGSRKQQEALKSVTGNC----MKKVFEALDTLGSTKWRVNKQVLSVLESIWVSG 518
+MR+ + C + V ++L+ LG+ W+ N ++L + ++
Sbjct: 278 VQLMRSTQEMDDNHD-HMLRYKCDSRELSAVLDSLNYLGTCAWKTNNRILDLAIQVFNDQ 336
Query: 519 GNIAGLVDRNDVLIPEKPLSEDMTEVQKWKWSV---RKAKKINQERHSQRCDTELKLSVA 575
G+ + V + +PL + + E + + R+A+K+ +E +S R KLSVA
Sbjct: 337 GDDTLAIPGPVVPLELEPLEKSVKEPEARMKQIQEHRRARKLAREHYSLRMTALYKLSVA 396
Query: 576 RRMKDEEGFYYPHNLDFRGRAYPMHPHLNHLS 607
+D F+ P N+DFRGR YP+ PH H+
Sbjct: 397 NHFRDRV-FWLPLNMDFRGRVYPIPPHCCHVG 427
>gi|1236332|gb|AAB01078.1| T3/T7-like RNA polymerase, partial [Isochrysis sp.]
Length = 161
Score = 159 bits (403), Expect = 5e-36, Method: Compositional matrix adjust.
Identities = 82/158 (51%), Positives = 103/158 (65%), Gaps = 8/158 (5%)
Query: 794 SVYGVTFVGAREQIKRRLEE----KGHITDDRQLFAAACYAAKVTLTALGEIFEAARSIM 849
+VYGVTFVGAR+QI+RRL E K I DDR+ A Y A++TL +LGE+FE A M
Sbjct: 1 TVYGVTFVGARDQIERRLRELPELKAEIADDRRFTELATYCARLTLASLGEVFEPAMVAM 60
Query: 850 GWLGDCAKVIASENQ-PVRWTTPLGLPVVQPYCKNERHLIRTSLQVLALQREGNL---VK 905
WL A++I ++Q PV WTTPLGLPVVQPY K I+T LQ + L +
Sbjct: 61 DWLAHGARIIGKDSQAPVEWTTPLGLPVVQPYHKPLNKPIKTILQCMNLADSADPSQPAD 120
Query: 906 IRKQRTAFPPNFVHSLDGSHMMMTAVACRDAGLHFAGL 943
+R+Q A PPN+VHSLD SHM+MTA ACR G+ FA +
Sbjct: 121 VRRQVMALPPNYVHSLDSSHMLMTASACRQEGIAFAAV 158
>gi|265525452|gb|ACY76218.1| predicted protein [Prochlorococcus phage P-SSP7]
Length = 727
Score = 159 bits (402), Expect = 7e-36, Method: Compositional matrix adjust.
Identities = 130/502 (25%), Positives = 228/502 (45%), Gaps = 48/502 (9%)
Query: 442 PMLVPPKKWKGYNKGGYLFLPSYVMRTHGSRKQQEALKSVTGNCMKKVFEALDTLGSTKW 501
PML+ P+ W + GGY + + + H ++ + L+ + G + ++ L+ + K+
Sbjct: 189 PMLIEPRDWSPMHDGGYYL--NDLTKCHEMVRRGKPLR-IQG---ETTYQFLNEIQKVKY 242
Query: 502 RVNKQVLSVLESIWVSG---GNIAGLVDRNDVLIPEKPLSEDMTEVQKWKWSVRKAKKIN 558
R+N ++ V E + G +++ D P+ P ED ++W+ A+ N
Sbjct: 243 RLNPFIVMVAEELEEREIEVGKFRPVINHPDP--PKPPNMEDEESRKQWRKDKAIARNKN 300
Query: 559 QERHSQRCDTELKLSVARRMKDEEGFYYPHNLDFRGRAYPMHPHLNHLSSDVCRGVLEFA 618
C T + ++ R KD+E +Y P + D+RGRAYP+ L +D + ++ FA
Sbjct: 301 ANEWRISCRTRMTMNCVREFKDKE-YYIPWSFDYRGRAYPIPSFLTPQDTDFGKSLIRFA 359
Query: 619 EGRPLGKSGLRWLKIHLANLFSGGVEKLSHDGRLAFVE--NHLYEIFDSAENPINGSRWW 676
E P+ + G++WL +A + G++K + + RL +V ++ I A +PIN W
Sbjct: 360 EEAPITEDGMKWLAFQVATTY--GLDKATMEERLDWVNEPENIKLIKRVATDPINNIGDW 417
Query: 677 LTAEDPFQCLAACINLSEALKSSSPHSVISHLPIHQDGSCNGLQHYAALGRNTLEAAAVN 736
A++PF+ LA C + + + LP+ D +C+GLQ A L R+ A+ VN
Sbjct: 418 EAADEPFEFLAGCEEYYSVVLIKT--RTTTGLPVATDATCSGLQILAGLARDKSTASLVN 475
Query: 737 LVAGEKPADVYSEIAVRVHEIMKRDSNKDPSKHPQALLAKILIDQVDRKLVKQTVMTSVY 796
++ +KP D Y IA + E + P+ L DRK K+ VMT Y
Sbjct: 476 VIPSDKPQDAYKVIAEKSLEHI-----------PERLRP-----YWDRKKTKRCVMTIPY 519
Query: 797 GVTFVGAREQIKRRLEEKGHITDDRQLFAAACYAAKVTLTALGEIFEAARSIMGWL-GDC 855
R+ I+ E+ ++ +L K A+ + +M W+ +
Sbjct: 520 NAKPFSNRQYIRDAFEDIDIEVENDEL----TQIVKAVRDAMEAVVPGPMKVMRWIEQEV 575
Query: 856 AKVIASENQPVRWTTPLGLPVVQPYCKN-----ERHLI-RTSLQVLALQREGNLVKIRKQ 909
+ I + W TP G V Q K E HL+ R ++V+ ++ V +R
Sbjct: 576 SNAIKEGATEITWVTPSGFRVNQRLMKYDHKNVELHLMGRCRIKVIDGEKG---VDLRHH 632
Query: 910 RTAFPPNFVHSLDGSHMMMTAV 931
+ A PN +HSLD S + ++A
Sbjct: 633 KNATAPNLIHSLDASLLHLSAT 654
>gi|61806414|ref|YP_214191.1| T7-like RNA polymerase [Prochlorococcus phage P-SSP7]
gi|61374339|gb|AAX44193.1| T7-like RNA polymerase [Prochlorococcus phage P-SSP7]
Length = 778
Score = 159 bits (401), Expect = 8e-36, Method: Compositional matrix adjust.
Identities = 130/502 (25%), Positives = 228/502 (45%), Gaps = 48/502 (9%)
Query: 442 PMLVPPKKWKGYNKGGYLFLPSYVMRTHGSRKQQEALKSVTGNCMKKVFEALDTLGSTKW 501
PML+ P+ W + GGY + + + H ++ + L+ + G + ++ L+ + K+
Sbjct: 240 PMLIEPRDWSPMHDGGYYL--NDLTKCHEMVRRGKPLR-IQG---ETTYQFLNEIQKVKY 293
Query: 502 RVNKQVLSVLESIWVSG---GNIAGLVDRNDVLIPEKPLSEDMTEVQKWKWSVRKAKKIN 558
R+N ++ V E + G +++ D P+ P ED ++W+ A+ N
Sbjct: 294 RLNPFIVMVAEELEEREIEVGKFRPVINHPDP--PKPPNMEDEESRKQWRKDKAIARNKN 351
Query: 559 QERHSQRCDTELKLSVARRMKDEEGFYYPHNLDFRGRAYPMHPHLNHLSSDVCRGVLEFA 618
C T + ++ R KD+E +Y P + D+RGRAYP+ L +D + ++ FA
Sbjct: 352 ANEWRISCRTRMTMNCVREFKDKE-YYIPWSFDYRGRAYPIPSFLTPQDTDFGKSLIRFA 410
Query: 619 EGRPLGKSGLRWLKIHLANLFSGGVEKLSHDGRLAFVE--NHLYEIFDSAENPINGSRWW 676
E P+ + G++WL +A + G++K + + RL +V ++ I A +PIN W
Sbjct: 411 EEAPITEDGMKWLAFQVATTY--GLDKATMEERLDWVNEPENIKLIKRVATDPINNIGDW 468
Query: 677 LTAEDPFQCLAACINLSEALKSSSPHSVISHLPIHQDGSCNGLQHYAALGRNTLEAAAVN 736
A++PF+ LA C + + + LP+ D +C+GLQ A L R+ A+ VN
Sbjct: 469 EAADEPFEFLAGCEEYYSVVLIKT--RTTTGLPVATDATCSGLQILAGLARDKSTASLVN 526
Query: 737 LVAGEKPADVYSEIAVRVHEIMKRDSNKDPSKHPQALLAKILIDQVDRKLVKQTVMTSVY 796
++ +KP D Y IA + E + P+ L DRK K+ VMT Y
Sbjct: 527 VIPSDKPQDAYKVIAEKSLEHI-----------PERLRP-----YWDRKKTKRCVMTIPY 570
Query: 797 GVTFVGAREQIKRRLEEKGHITDDRQLFAAACYAAKVTLTALGEIFEAARSIMGWL-GDC 855
R+ I+ E+ ++ +L K A+ + +M W+ +
Sbjct: 571 NAKPFSNRQYIRDAFEDIDIEVENDEL----TQIVKAVRDAMEAVVPGPMKVMRWIEQEV 626
Query: 856 AKVIASENQPVRWTTPLGLPVVQPYCKN-----ERHLI-RTSLQVLALQREGNLVKIRKQ 909
+ I + W TP G V Q K E HL+ R ++V+ ++ V +R
Sbjct: 627 SNAIKEGATEITWVTPSGFRVNQRLMKYDHKNVELHLMGRCRIKVIDGEKG---VDLRHH 683
Query: 910 RTAFPPNFVHSLDGSHMMMTAV 931
+ A PN +HSLD S + ++A
Sbjct: 684 KNATAPNLIHSLDASLLHLSAT 705
>gi|1236342|gb|AAB01083.1| RNA polymerase, partial [Hanusia phi]
Length = 160
Score = 157 bits (397), Expect = 2e-35, Method: Compositional matrix adjust.
Identities = 82/157 (52%), Positives = 105/157 (66%), Gaps = 7/157 (4%)
Query: 794 SVYGVTFVGAREQIKRRLEEKGHI--TDDRQ---LFAAACYAAKVTLTALGEIFEAARSI 848
+VYGVTF+GAREQI RL E I T++ Q L+ A+ Y AK+TL ++G IF AR
Sbjct: 1 TVYGVTFIGAREQIYNRLYEAYGIPGTNELQENDLYRASMYLAKLTLASVGNIFVGARKT 60
Query: 849 MGWLGDCAKVIASENQPVRWTTPLGLPVVQPYCKNERHLIRTSLQVLALQR--EGNLVKI 906
M WL AK++AS QPVRWTTPLGLPVVQPY K + T++Q ++L + E +
Sbjct: 61 MEWLTSVAKIVASTGQPVRWTTPLGLPVVQPYYKETMMSVETAVQNISLLKCDENGPINK 120
Query: 907 RKQRTAFPPNFVHSLDGSHMMMTAVACRDAGLHFAGL 943
KQRTAFPPNFVHSLD +H++MTA+ G FAG+
Sbjct: 121 LKQRTAFPPNFVHSLDSTHLLMTAIEFDRCGKMFAGV 157
>gi|449682634|ref|XP_004210133.1| PREDICTED: DNA-directed RNA polymerase, mitochondrial-like [Hydra
magnipapillata]
Length = 645
Score = 157 bits (396), Expect = 4e-35, Method: Compositional matrix adjust.
Identities = 85/232 (36%), Positives = 143/232 (61%), Gaps = 5/232 (2%)
Query: 441 VPMLVPPKKWKGYNKGGYLFLPSYVMRT-HGSRKQQEALKSVTGNCMKKVFEALDTLGST 499
+PM++PP+ W G YL L S +RT G K E K+ + ++F++L+ LG+
Sbjct: 373 LPMVMPPRPWVSLTSGAYLLLHSDFVRTVSGQYKLHELSKASKEGQLSRIFDSLNYLGNC 432
Query: 500 KWRVNKQVLSVLESIWVSGGNIA-GLVDRNDVLIPEKPLSEDMTEVQKWKWSVRKAKKIN 558
W+VN ++L ++ ++ + G++ ++ + ++ + EDMT + K + R KK++
Sbjct: 433 GWKVNTKILDIMLEMFNNKGDMKLDIIGPIETMMQQYDYKEDMTAIDKKT-NKRLKKKLH 491
Query: 559 QERHSQRCDTELKLSVARRMKDEEGFYYPHNLDFRGRAYPMHPHLNHLSSDVCRGVLEFA 618
E + R D KLS++ +D+ F+ P+NLDFRGRAYP+ PH +H+ SD RG+L FA
Sbjct: 492 HELFALRMDLLYKLSISNHYRDK-IFWIPNNLDFRGRAYPIAPHCSHIGSDAARGLLLFA 550
Query: 619 EGRPLGKSGLRWLKIHLANLFSGGVEKLSHDGRLAFVENHLYEIFDSAENPI 670
+G+ LG++GL W+K+HL N+ G ++K S R+ + +NHL EI DSA+ P+
Sbjct: 551 KGKKLGENGLNWIKVHLVNV-HGHLKKSSLKERIEYADNHLEEIMDSADKPL 601
>gi|313244255|emb|CBY15079.1| unnamed protein product [Oikopleura dioica]
Length = 410
Score = 154 bits (390), Expect = 2e-34, Method: Compositional matrix adjust.
Identities = 90/293 (30%), Positives = 148/293 (50%), Gaps = 19/293 (6%)
Query: 652 LAFVENHLYEIFDSAENPINGSRWWLTAEDPFQCLAACINLSEALKSSSPHSVISHLPIH 711
L + + + I DS +P+ G RWW T E PFQ LAAC+ + +A + P + + +H
Sbjct: 2 LHYAWQNFHAICDSGRDPLTGYRWWETCEKPFQVLAACMEIWKATQLDDPSQYETKISVH 61
Query: 712 QDGSCNGLQHYAALGRNTLEAAAVNLVAGEKPADVYSEIAVRVHEIMKRDSNKDPSKHPQ 771
DG+CNG QHY+A+GR+T+ A N++ E+P+D Y I ++M D + + +
Sbjct: 62 MDGTCNGFQHYSAMGRDTIGAIFTNVLPTERPSDFYQSILDSALKLMDEDIAAEGANFEK 121
Query: 772 ALLAKILIDQVDRKLVKQTVMTSVYGVTFVGAREQIKRRLEEKGHITDDRQLFAAACYAA 831
+AKI V R +VK+ VM YG++ GA + + L K D L A Y
Sbjct: 122 LRVAKIARKVVTRSIVKRPVMAIPYGLSVRGAVDICRNNLHGKISSAD---LTPVAQYII 178
Query: 832 KVTLTALGEIFEAARSIMGWLGDCAKVIASE-NQPVRWTTPLGLPVVQPYCKNERHLIRT 890
+ +++ F + +I WL + +S+ P+ + +P+G PV Q K+ +T
Sbjct: 179 RNLFSSINSTFRNSMAIKQWLAGYNRYCSSKLGVPIEYISPMGFPVSQIGYKSMLQR-KT 237
Query: 891 SLQVLALQREGNLVKIRKQRT--AFP------------PNFVHSLDGSHMMMT 929
S++VL + N +K + FP PNFVH++D SH++M+
Sbjct: 238 SMEVLVAAVDENRIKNERDNCYGVFPAADGQRSGNSLSPNFVHAIDASHLLMS 290
>gi|291335377|gb|ADD94991.1| T7-like RNA polymerase [uncultured phage MedDCM-OCT-S04-C24]
Length = 662
Score = 154 bits (388), Expect = 3e-34, Method: Compositional matrix adjust.
Identities = 159/666 (23%), Positives = 283/666 (42%), Gaps = 77/666 (11%)
Query: 233 REQKMQRTKKQKAAYAPHIELLPADKVAV-IVMHKMMGLVMAGHEDRCVQVVQAAVHIGM 291
+E K K+ Y +E L A +AV I K+ ++++ Q + IG+
Sbjct: 67 KEGKTGTAFKEIQQYLADVEPLAAAAIAVKITFDKVFS-----YKEKNNQATKVCESIGL 121
Query: 292 AIEQEIRIHSFLEKTKNYKRKKIIADTEEVLSKEKELLRKRVNSLIKSKRVMEAQKLLKN 351
A+EQE ++ + + +L K+ R S+ ++++ + L+
Sbjct: 122 AVEQECQMRHYEKHAPG------------LLKTLKDNYWHR--SIGTQQKLVVIRTLMNR 167
Query: 352 EETK---PWGRDTQAKLGSRLVELLIETAYVQHPVNPADYSPPDVRPAFRHRFKTILKHP 408
+ K WG + KLG L++ +++++ + D++ R R + ++ P
Sbjct: 168 YDVKQWTTWGSSNRIKLGGWLLDCIMQSS---------GWFTKDMQQQGRKRVQYVIPTP 218
Query: 409 GQKTTKRYGVVECDPLVLEGLDRSAKHMLIPYVPMLVPPKKWKGYNKGGYLFLPSYVMRT 468
+E V+ R A+ PML+ P W+ GGY+ + VMR
Sbjct: 219 E--------FLEIKDQVM----RDAELFSPLAWPMLIEPNDWEHDRCGGYIL--NEVMRG 264
Query: 469 HGSRKQQEALKSVTGNCMKKVFEALDTLGSTKWRVNKQVLSVLESIWVSGGNIAGLVDRN 528
H ++ + S+ G+ K E L+ + +R+N ++ V E + + +
Sbjct: 265 HDMVRRGDP-TSIQGD---KPLEFLNKIQKVAYRLNPFIVGVAEELDRLERAVGKFLPII 320
Query: 529 DVLIPEKPLS-EDMTEVQK-WKWSVRKAKKINQERHSQRCDTELKLSVARRMKDEEGFYY 586
+P KP+ E+ E +K ++ + + + + + C T + + R KD + FY
Sbjct: 321 HHELPPKPVDIEENDESRKSYRRNCAEVHNLQAQEFRKSCRTRMTMEAVARFKDRDKFYI 380
Query: 587 PHNLDFRGRAYPMHPHLNHLSSDVCRGVLEFAEGRPLGKSGLRWLKIHLANLFSGGVEKL 646
P + D+RGRAYP+ L +D + +L FA+ + WL +A + G++K
Sbjct: 381 PWSFDYRGRAYPIPAFLTPQDTDFGKSLLMFAKASFMTPKAEDWLAFQVATTY--GLDKA 438
Query: 647 SHDGRLAFVENHLYEIFDSAENPINGSRWWLTAEDPFQCLAACINLSEALKSSSPHSVIS 706
RL +V+N+ + I A +PI W A++P+Q LAAC + +
Sbjct: 439 PMRERLDWVKNNTHLISCVASDPILHIHEWEAADEPWQFLAACEEYYHCVLKCDRQE--T 496
Query: 707 HLPIHQDGSCNGLQHYAALGRNTLEAAAVNLVAGEKPADVYSEIAVRVHEIMKRDSNKDP 766
I D +C+GLQ A L R+ A VN++ ++P D Y +A +
Sbjct: 497 RAMIATDATCSGLQILAGLARDRNTAQLVNVLPSDRPQDAYKVVA------------EQA 544
Query: 767 SKHPQALLAKILIDQVDRKLVKQTVMTSVYGVTFVGAREQIKRRLEEKGHITDDRQLFAA 826
S H K + +DRK VK+ VMT Y R IK L+EKG + D+
Sbjct: 545 SPH----CPKSIRPYMDRKTVKRVVMTVPYNAKPFSNRGYIKDALKEKG-VEIDKDDLTK 599
Query: 827 ACYAAKVTLTALGEIFEAARSIMGWL-GDCAKVIASENQPVRWTTPLGLPVVQPYCKNER 885
A + A+ E+ ++M W+ + +K I + WTTP G V Q KN++
Sbjct: 600 TVAAVR---NAMDEVVPGPMAVMSWIESEVSKAIDRGKTELTWTTPSGFVVTQKLMKNKQ 656
Query: 886 HLIRTS 891
+ S
Sbjct: 657 FRLSCS 662
>gi|302832495|ref|XP_002947812.1| hypothetical protein VOLCADRAFT_47196 [Volvox carteri f.
nagariensis]
gi|300267160|gb|EFJ51345.1| hypothetical protein VOLCADRAFT_47196 [Volvox carteri f.
nagariensis]
Length = 169
Score = 153 bits (386), Expect = 5e-34, Method: Compositional matrix adjust.
Identities = 79/162 (48%), Positives = 103/162 (63%), Gaps = 6/162 (3%)
Query: 787 VKQTVMTSVYGVTFVGAREQIKRRLEEKGHITDDRQLFAAACYAAKVTLTALGEIFEAAR 846
VKQTVMT VYGVT +GAREQI+ RLEE+G T++R+ A Y +++ ++GE+F
Sbjct: 1 VKQTVMTYVYGVTMMGAREQIENRLEERGW-TNERERRKVASYLSRIIFESMGEVFGPVV 59
Query: 847 SIMGWLGDCAKVIASENQPVRWTTPLGLPVVQPYCKNERHLIRTSLQVLALQRE-----G 901
++ WL DCAK S QPV WT+PLG P+ QPY K + T LQV R+
Sbjct: 60 ALRAWLDDCAKFAVSSGQPVCWTSPLGFPIEQPYRKLPTVQVWTPLQVCITLRDYRRESA 119
Query: 902 NLVKIRKQRTAFPPNFVHSLDGSHMMMTAVACRDAGLHFAGL 943
V R+QR FPPN++HSLD +HMMMTA+A R AG FA +
Sbjct: 120 APVDPRRQRNGFPPNYIHSLDSAHMMMTALAVRRAGGVFAAV 161
>gi|385304971|gb|EIF48970.1| mitochondrial rna polymerase [Dekkera bruxellensis AWRI1499]
Length = 391
Score = 153 bits (386), Expect = 6e-34, Method: Compositional matrix adjust.
Identities = 116/405 (28%), Positives = 195/405 (48%), Gaps = 40/405 (9%)
Query: 247 YAPHIELLPADKVAVIVMHKMMGLVMAGHEDRCVQVVQAAVHIGMAIEQEIRIHSFL-EK 305
Y P I L+ +KVA+I + ++M + R V V + + + ++E E + L
Sbjct: 3 YGPFIXLMKPEKVAIITILEVMKNCVTSDIARGVPVSKVVMSVSKSLELEYKSEKVLASD 62
Query: 306 TKNYKRKKIIADTEEVLSKEKELLRKRVNSLIKSKRVMEA--QKLLKNEETKP------W 357
Y + I T E K LR + ++++++ A +K L+N + W
Sbjct: 63 VDXYXNFRAIRKTPEF----KRFLRSK-----QAEKIIXAAERKSLRNXSIETETSQLLW 113
Query: 358 GRDTQAKLGSRLVELLIETAYVQHPVNPADYSPPDVR----PAFRHRFKTILKHPGQKTT 413
D+ ++GS L+ +L++ A V V D +V+ PAF H + ++ G
Sbjct: 114 DADSHCRVGSALISMLLQIAKVD--VEGVDPKTXEVKKALAPAFYHTYD--FQNGG---- 165
Query: 414 KRYGVVECDPLVLE--GLDRSAKHMLIPYVPMLVPPKKWKGYNKGGYLFLPSYVMRTHGS 471
+ GV++ + G DR + + Y+PM+ P+ W YN GGY V+R+ +
Sbjct: 166 -KVGVIKVNQRFSSKLGKDRLDQSIQAQYLPMIARPRPWTTYNDGGYYLKRCLVLRSKNA 224
Query: 472 RKQQEALKSVT-GNCMKKVFEALDTLGSTKWRVNKQVLSVLESIWVSGGNIAGLVDRNDV 530
+Q K+ M KV L+ LG+T W VNK++L ++ +W +G + +
Sbjct: 225 PEQFAYAKAAAMSGKMDKVLSGLNALGNTSWTVNKRILELMTQVWNTGKAFLEIPKAEEK 284
Query: 531 LIPEKPLSE--DMTEVQKWKWSVRKAKKINQERHSQRCDTELKLSVARRMKDEEGFYYPH 588
LI KP ++ + E+ +++ R + S RCD KL +AR E ++PH
Sbjct: 285 LILPKPPAKGAEPIEIFRYRRDCRDKCNAFAKDRSMRCDMNYKLEIARAFLGER-IFFPH 343
Query: 589 NLDFRGRAYPMHPHLNHLSSDVCRGVLEFAEGRPLGKSGLRWLKI 633
+LDFRGRAYP+ P+ NHL +D+ RG+L F GR S RW+K+
Sbjct: 344 SLDFRGRAYPIPPNFNHLGNDLTRGLLRFL-GRKEAWS--RWIKM 385
>gi|451989257|gb|AGF91727.1| RNA polymerase [Synechococcus phage S-CBP4]
Length = 792
Score = 152 bits (384), Expect = 9e-34, Method: Compositional matrix adjust.
Identities = 136/587 (23%), Positives = 250/587 (42%), Gaps = 68/587 (11%)
Query: 357 WGRDTQAKLGSRLVELLIETAYVQHPVNPADYSPPDVRPAFRHRFKTILKHPGQKTTKRY 416
WGR+ + ++G +++ +I+T+ + +VR R+R I+ P
Sbjct: 175 WGREARVRIGVWMLDCIIDTS---------GWFTREVRNEGRNRISYIVPTP-------- 217
Query: 417 GVVECDPLVLEGLDRSAKHMLIPYV-PMLVPPKKWKGYNKGGYLFLPSYVMRTHGSRKQQ 475
+ L ++ + P PML+ P W GGYL + VMR H
Sbjct: 218 -----EFLRIKDKVMDDAELFAPLAWPMLIEPNNWTNDRAGGYLL--NEVMRGH------ 264
Query: 476 EALKSVTGNCMK--KVFEALDTLGSTKWRVNKQVLSVLESIWVSGGNIAGLVDRNDVLIP 533
++ C++ + L+ + + +N ++ V E + G + + + P
Sbjct: 265 HMVRRGNHGCIQGETPIDFLNKIQKVAFTLNPFIVEVAEDLARLGRPVGKFLPVVNHAEP 324
Query: 534 EKP--LSEDMTEVQKWKWSVRKAKKINQERHSQRCDTELKLSVARRMKDEEGFYYPHNLD 591
KP ++E+ +++K ++++ K + + + C T + + R KD F+ P + D
Sbjct: 325 PKPFDIAENEESRKQYKRAMKQVKDLQYQESKKSCRTRMTMEAVNRFKDVPKFFIPWSFD 384
Query: 592 FRGRAYPMHPHLNHLSSDVCRGVLEFAEGRPLGKSGLRWLKIHLANLFSGGVEKLSHDGR 651
+RGRAYP+ L +D + +L FA+G + WL +A F G++K R
Sbjct: 385 YRGRAYPIPAFLTPQDTDFGKSLLIFADGSYMTPEAEDWLAFQVATTF--GLDKAPMTER 442
Query: 652 LAFVENHLYEIFD-SAENPINGSRWWLTAEDPFQCLAACINLSEALKSSSPHSVISHLPI 710
L + N+ +E+F A +P+ W E+P+Q LAA + ++ + L +
Sbjct: 443 LEWARNN-HELFTLIATDPVRNLPLWEGVEEPWQFLAAAEEYYHCVVAADRQ--FTRLMV 499
Query: 711 HQDGSCNGLQHYAALGRNTLEAAAVNLVAGEKPADVYSEIAVRVHEIMKRDSNKDPSKH- 769
D +C+GLQ A L R+ A VN++ G+KP D Y +A ++ + H
Sbjct: 500 ATDATCSGLQILAGLARDKSTARLVNVLPGDKPQDAYKVVA------------EEAAPHC 547
Query: 770 PQALLAKILIDQVDRKLVKQTVMTSVYGVTFVGAREQIKRRLEEKGHITDDRQLFAAACY 829
P+++ + DRK VK+ VMT Y R I+ L EKG D L
Sbjct: 548 PESIQPYM-----DRKTVKRVVMTVPYNAKPFSNRGYIRDALAEKGVEIDKDDL----TK 598
Query: 830 AAKVTLTALGEIFEAARSIMGWL-GDCAKVIASENQPVRWTTPLGLPV----VQPYCKNE 884
K A+ + ++M W+ + A I + + + W TP G V +
Sbjct: 599 TVKAVRNAMDVVVPGPMAVMSWIEQEVANAIKAGKEFLEWVTPSGFVVHQKLNKKLLVKL 658
Query: 885 RHLIRTSLQVLALQREGNLVKIRKQRTAFPPNFVHSLDGSHMMMTAV 931
+ + ++ + + V + + A PN +HSLD S + ++ +
Sbjct: 659 QLQLLGRCEMSVAVDDSDEVDLNHHKNATAPNLIHSLDASLLHLSVL 705
>gi|1236348|gb|AAB01086.1| RNA polymerase, partial [Tetrahymena pyriformis]
Length = 155
Score = 151 bits (382), Expect = 1e-33, Method: Compositional matrix adjust.
Identities = 72/153 (47%), Positives = 105/153 (68%), Gaps = 4/153 (2%)
Query: 794 SVYGVTFVGAREQIKRRLEEKGHITDDRQLFAAACYAAKVTLTALGEIFEAARSIMGWLG 853
SVYGVTFVGAR+QI ++L +K +T++ + A+ Y A+ TL + ++F +A I WL
Sbjct: 1 SVYGVTFVGARKQIYKQLRDKDFLTEEES-YEASYYLAQTTLDCIKDLFSSAHYIKKWLI 59
Query: 854 DCAKVIASENQPVRWTTPLGLPVVQPY-CKNERHLIRTSLQVLALQREGNLVKIR--KQR 910
DCA +IA+ + PV W TP+GLPVVQPY K +I T +Q +A++ + + + I KQR
Sbjct: 60 DCAGLIANTSNPVSWITPMGLPVVQPYRSKGSLDVINTVIQKIAIESDSDRLPINKSKQR 119
Query: 911 TAFPPNFVHSLDGSHMMMTAVACRDAGLHFAGL 943
+AFPPNF+HSLD +H+M TA+ C G+HFA +
Sbjct: 120 SAFPPNFIHSLDSTHLMYTAMECIKRGMHFAAV 152
>gi|239907675|ref|YP_002954416.1| RNA-polymerase [Desulfovibrio magneticus RS-1]
gi|239797541|dbj|BAH76530.1| putative RNA-polymerase [Desulfovibrio magneticus RS-1]
Length = 619
Score = 150 bits (379), Expect = 4e-33, Method: Compositional matrix adjust.
Identities = 135/529 (25%), Positives = 226/529 (42%), Gaps = 101/529 (19%)
Query: 442 PMLVPPKKWK-GYNKGGYLFLP--SYVMRTHGSRKQQEALKSVTGNCMKKVF-EALDTLG 497
PM P +WK + GGYL S+ S+++ + N K F +AL+ L
Sbjct: 56 PMFCSPDEWKKDLSGGGYLIKEDHSFAFNVKSSKQRICIISEYKKNSFDKTFLKALNLLQ 115
Query: 498 STKWRVNKQVLSVLESIWVS---GGNIAGLVDRNDVLIPEKPLSEDMTEVQKWKWSVRKA 554
T + +NK++L+ ++ S G N+ K L +D T
Sbjct: 116 QTPYNINKKILNTMKHFHGSTSYGNNLT------------KKLLQDQT------------ 151
Query: 555 KKINQERHSQRCDTELKLSVARRMKDEEGFYYPHNLDFRGRAYPMHPHLNHLSSDVCRGV 614
LS+A + D FY P LDFRGR Y ++ S D R +
Sbjct: 152 -----------------LSLADDLADRT-FYIPWYLDFRGRMYSSVLQISPQSHDEGRSL 193
Query: 615 LEFAEGRPLGK----SGLRWLKIHLANLFSGGVEKLSHDGRLAFVENHLYEIFDSAENPI 670
L F+E + + K + L L + + + K+S + ++++E++ +IF SA++PI
Sbjct: 194 LVFSEKKHIDKHNECASLENLAVFGYSKYGSPTGKVSKEKMISWIESNERDIFKSAQDPI 253
Query: 671 NGSRWWLTAEDPFQCLAACINLSEALKSSSPHSVISHLPIHQDGSCNGLQHYAALGRNTL 730
+W A D + LA C + ++ S +++P++ DG+CNG QHYAAL R+ +
Sbjct: 254 LNFEFWQKASDRYSFLAFCFEW-KNIQQSKAGERYTNIPVYVDGTCNGFQHYAALLRDHI 312
Query: 731 EAAAVNLVAGEKPADVYSEIAVRVHEIMKRDSNKDPSKHPQALLAKILIDQVDRKLVKQT 790
A VNLV GE P D Y + ++H S+ + + K + + VDR +K++
Sbjct: 313 SAPFVNLVDGEIPGDFYQNVVDKLH------SSAGTTDFSDDITRKFVAEFVDRSFIKKS 366
Query: 791 VMTSVYG--------VTFVGAREQIKRR----------LEEKGHITD-DRQLFAAACYAA 831
++++ YG VT + + ++ L + I D D +L A
Sbjct: 367 IISAGYGAGLERRSKVTSKNLHDALVQKYGKNWFQVIGLATENSIEDKDIKLLEKARKIE 426
Query: 832 KVTLTALGEIFEAARSIMGWLGDCAKVIASENQPVRWTTPLGLPVVQPYCKNERHLIRTS 891
K A+ +I A WL + N+ + W P G+PV Y +
Sbjct: 427 KQIDDAIKDICPAFSQAKNWLTGVQSLFNENNKCLCWNNPAGVPVHNFY-------YQFP 479
Query: 892 LQVLALQREGNLVKI-------------RKQRT--AFPPNFVHSLDGSH 925
+ ++L +G L KI RK++T + PN++HSLD H
Sbjct: 480 VYEISLYMDGKLHKIQFRDYESTQEMSLRKKKTSSSISPNYIHSLDAGH 528
>gi|291335906|gb|ADD95501.1| T7-like RNA polymerase [uncultured phage MedDCM-OCT-S08-C41]
Length = 781
Score = 149 bits (376), Expect = 8e-33, Method: Compositional matrix adjust.
Identities = 149/589 (25%), Positives = 250/589 (42%), Gaps = 70/589 (11%)
Query: 357 WGRDTQAKLGSRLVELLIETAYVQHPVNPADYSPPDVRPAFRHRFKTILKHPGQKTTKRY 416
WGR + KLG L++ + E + + D+R Q+ KR
Sbjct: 176 WGRALRVKLGGWLLDCICEVS---------GWFLIDMR---------------QQGNKRT 211
Query: 417 GVVECDPLVLEGLDR--SAKHMLIPYV-PMLVPPKKWKGYNKGGYLFLPSYVMRTHGSRK 473
V P +E D+ + + P PML+PP W GGYL + VMR + +
Sbjct: 212 NYVIPSPAFMEIKDQVMAQAELFSPLAWPMLIPPNDWDTERPGGYLL--NEVMRGYDMVR 269
Query: 474 QQEALKSVTGNCMKKVFEALDTLGSTKWRVNKQVLSVLESIWVSGGNIAGLVDRNDVLIP 533
+ L + G + L+ + + +N V+ V +++ + V + +V +P
Sbjct: 270 RGNPL-CIQG---ETPINFLNHIQKVAFTLNPFVVDVAQTLMERRVEVGKFVPQVEVPLP 325
Query: 534 EKPLSEDMTEVQKWKWSVRKAKKINQERHSQ----RCDTELKLSVARRMKDEEGFYYPHN 589
KP D+ + + + S R+A ++Q C T + ++ +D + FY P +
Sbjct: 326 PKP--ADIDDNKDSEMSYRRAAAEAYNYNAQAFQRSCRTRMTMNAVEVFQDVDKFYIPWS 383
Query: 590 LDFRGRAYPMHPHLNHLSSDVCRGVLEFAEGRPLGKSGLRWLKIHLANLFSGGVEKLSHD 649
LD+RGRAYP+ L +D + +L+F EG + WL +A + G++K
Sbjct: 384 LDYRGRAYPIPAFLTPQDTDFGKSLLKFYEGSFMTPEAEDWLAFQVATTYGRGLDKAPIQ 443
Query: 650 GRLAF-VENHLYEIFDS-AENPINGSRWWLTAEDPFQCLAACINLSEALKSSSPHSVISH 707
RL + ++NH ++ +S A +P W A++P+ LAAC + + +
Sbjct: 444 ERLQWTLDNH--DLIESIALDPDGYLHEWEVADEPWTFLAACDEYFHCVIQCDRNH--TS 499
Query: 708 LPIHQDGSCNGLQHYAALGRNTLEAAAVNLVAGEKPADVYSEIAVRVHEIMKRDSNKDPS 767
LP+ D +C+GLQ + L R+ AA VN++ E P D Y +A
Sbjct: 500 LPVACDATCSGLQILSGLSRDASTAALVNVLPSEVPQDAYKVVA---------------- 543
Query: 768 KHPQALLAKILIDQVDRKLVKQTVMTSVYGVTFVGAREQIKRRLEEKGHITDDRQLFAAA 827
+ + + + + +DRK+VK+ VMT Y R I+ L+EKG + L A
Sbjct: 544 EQAKPHVPECIRPYMDRKVVKKVVMTVPYNSKPFSNRSYIRAALKEKGVEVEKDDLTA-- 601
Query: 828 CYAAKVTLTALGEIFEAARSIMGWL-GDCAKVIASENQPVRWTTPLGLPVVQPYCKNERH 886
K A+ I +M W+ + A I ++W TP G V Q K
Sbjct: 602 --TVKAVRDAMNVIVPGPMKVMQWIEQEVANAIDRGATSLQWITPSGFTVNQKLMKPTVQ 659
Query: 887 LIRTSL----QVLALQREGNLVKIRKQRTAFPPNFVHSLDGSHMMMTAV 931
I L Q+ G+ V + A PN +HSLD S + ++A+
Sbjct: 660 TIELQLMGRVQIQVATEGGDKVDRNHHKNATAPNLIHSLDASLLHLSAL 708
>gi|1236338|gb|AAB01081.1| T3/T7-like RNA polymerase, partial [Thraustochytrium aureum]
Length = 180
Score = 147 bits (371), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 78/177 (44%), Positives = 100/177 (56%), Gaps = 27/177 (15%)
Query: 794 SVYGVTFVGAREQIKRRLEE-------------------------KGHITDDRQLFAAAC 828
SVYGVTFVGAR QI RLEE G + D QL AA+
Sbjct: 1 SVYGVTFVGARAQILPRLEEINDKNIYLENELKKPEGMRDPDLTQPGTVFDRDQLNAASY 60
Query: 829 YAAKVTLTALGEIFEAARSIMGWLGDCAKVIASENQPVRWTTPLGLPVVQPYCKNERHLI 888
Y A+VTL ++GE F++A I WLG AK+ QPV W TPLGLPVVQPY + +
Sbjct: 61 YLARVTLKSIGETFQSANEIQHWLGQLAKICTDSGQPVSWVTPLGLPVVQPYKHGAKQQV 120
Query: 889 RTSLQVLALQR--EGNLVKIRKQRTAFPPNFVHSLDGSHMMMTAVACRDAGLHFAGL 943
T++Q + ++ + + V KQR AFPPNFVHS+D +HM+MTA AC G+ F +
Sbjct: 121 HTAMQTVVVREFIDDSPVHKVKQRNAFPPNFVHSIDSTHMLMTARACEKQGIAFTAV 177
>gi|395132388|dbj|BAM29336.1| rnapol (mitochondrion) [Lentinula edodes]
Length = 1109
Score = 146 bits (369), Expect = 4e-32, Method: Compositional matrix adjust.
Identities = 129/498 (25%), Positives = 230/498 (46%), Gaps = 74/498 (14%)
Query: 488 KVFEALDTLGSTKWRVNKQVLSVLESIWVSGGNIAGLVDRNDVLIPEKPLSEDMTEVQK- 546
K+ + ++ LGS + +N QVL + ++ S L + N + ++ + +M K
Sbjct: 513 KIIDCINYLGSIPYTINTQVLKHVLNLIKSIEGEEQLYNNNKI---KELIKLNMHHNTKN 569
Query: 547 -WKWSVRK-------AKKINQERHSQR--CDTELKLSVARRMKDEEGFYYPHNLDFRGRA 596
+ ++RK K N + +S + + L S + Y+ + +D+RGR
Sbjct: 570 LYNLTLRKKYGDISLIHKHNSQYYSDKSIITSALLFSSWCDSSKDNSIYFNYFIDWRGRL 629
Query: 597 YPMHPHLNHLSSDVCRGVLEFAEGRPLGKSGLRWLKIHLANLFSGGVEKLSHDGRLAFVE 656
Y +L+ ++ R +L F G+ + + GL LKI+ AN F G++KLS++ RL + E
Sbjct: 630 YTDTSYLSFQGGNLARSLLLFKRGQLITEKGLEHLKIYTANCF--GLDKLSYNQRLEWTE 687
Query: 657 NHLYEIF-------DSAENPINGSR--------WWLTAEDPFQCLAACINLSEALKSSSP 701
N+L +I D ++ I+ + + + A++P L+ C+ L S P
Sbjct: 688 NNLEKIISLPNLSDDDFKSMIHNHKPIYSEFYNFMMEADEPLLFLSCCVELKNYY--SDP 745
Query: 702 HSVISHLPIHQDGSCNGLQHYAALGRNTLEAAAVNLVAGEK---PADVYSEIAV----RV 754
+ +S+LP++ D +C+GLQH + + +T A VN+V K P DVY+ + + ++
Sbjct: 746 NRFLSNLPVYLDATCSGLQHLSTMINDTNLAKYVNIVKSNKEDIPNDVYTHMVLFVNKKI 805
Query: 755 HEIMKRDSNKDPSKHPQALLAKILIDQVDRKLVKQTVMTSVYGVTFVGAREQIKRR---- 810
E +K D + A+L I ++RK +K +MT YG T G EQ+K
Sbjct: 806 QEYIKVD-------YSLAILENI---NINRKFIKPGIMTISYGATTRGIAEQLKNNHFRQ 855
Query: 811 -------------LEEKGHITD-DRQLFAAACYA-AKVTLTALGEIFEAARSIMGWLGDC 855
+ ++ + TD D L Y AK + L ++F ++ +L D
Sbjct: 856 IDLVKGKSLTYELISKEFNKTDFDIHLTVKQIYVLAKAIHSVLYDVFPNLTILVKYLKDM 915
Query: 856 AKVIASENQPVRWTTPLGLPVVQPYCKNERHLIRTSL-----QVLALQREGNLVKIRKQR 910
K++ P W TP GL + Q Y + + TS+ + + + N+ IRKQ
Sbjct: 916 NKLLKKLKLPTIWLTPAGLIIEQNYAPIKSRDLTTSILGKRRGITLREMDRNVTDIRKQN 975
Query: 911 TAFPPNFVHSLDGSHMMM 928
+ PN VHS D S++ +
Sbjct: 976 NSIVPNVVHSFDASNIAL 993
>gi|402580131|gb|EJW74081.1| hypothetical protein WUBG_15011, partial [Wuchereria bancrofti]
Length = 250
Score = 146 bits (369), Expect = 5e-32, Method: Compositional matrix adjust.
Identities = 85/235 (36%), Positives = 133/235 (56%), Gaps = 27/235 (11%)
Query: 487 KKVFEALDTLGSTKWRVNKQVLSVLESIWVSGGNIAG---------------------LV 525
+ VF+AL+ LG T W++N+ VL V ++ A +V
Sbjct: 4 RPVFDALNDLGITPWKINEPVLDVALKVFEMAQTNADEKFLEKLSIPIHPSRVPIPDYVV 63
Query: 526 DRNDVLIPEKPLSEDMTEVQKWKWSVRKAKKINQERHSQRCDTELKLSVARRMKDEEGFY 585
++ I E P++ D E K K+ +A K E +S C +L++A K +
Sbjct: 64 KFGNMEIDELPIT-DWREYSKAKY---EAMKKRNELNSLWCWLLYRLTMANHFKGSV-LF 118
Query: 586 YPHNLDFRGRAYPMHPHLNHLSSDVCRGVLEFAEGRPLGKSGLRWLKIHLANLFSGGVEK 645
+PH++DFRGR YP+ P+LNH+ D+ R +L FAEGRPLG GLRWLK+H NL +G ++K
Sbjct: 119 FPHSMDFRGRVYPITPYLNHMGDDLNRSLLVFAEGRPLGDDGLRWLKLHCINL-TGILKK 177
Query: 646 LSHDGRLAFVENHLYEIFDSAENPINGSRWWLTAEDPFQCLAACINLSEALKSSS 700
S+ R+A+ + L +I +SA NP++G WW +E+P+Q L+ACI + AL++ +
Sbjct: 178 ESNFSRVAYADEMLPKILESANNPLSGEMWWTKSEEPWQTLSACIEIRNALQTGN 232
>gi|397622165|gb|EJK66592.1| hypothetical protein THAOC_12479 [Thalassiosira oceanica]
Length = 229
Score = 146 bits (369), Expect = 5e-32, Method: Compositional matrix adjust.
Identities = 71/160 (44%), Positives = 104/160 (65%), Gaps = 8/160 (5%)
Query: 792 MTSVYGVTFVGAREQIKRRLEEK----GHITDD--RQLFAAACYAAKVTLTALGEIFEAA 845
MTSVYGVTF+GAR QI+ ++ EK G+ D+ + A Y A +T+ +GE F+ A
Sbjct: 1 MTSVYGVTFIGARNQIEEKINEKLSSRGYDIDEIAEDINVACGYLASLTMEVIGEKFKGA 60
Query: 846 RSIMGWLGDCAKVIASENQPVRWTTPLGLPVVQPYCKNERHLIRTSLQVLALQREGNLVK 905
R M WL +CA++I S+ QPV + +P+G+PVVQPY + + T LQ + L + + +
Sbjct: 61 RQTMTWLAECARLIGSQGQPVSFISPIGVPVVQPYRQKRPFQVITLLQNITLTNDSDKLP 120
Query: 906 IRKQR--TAFPPNFVHSLDGSHMMMTAVACRDAGLHFAGL 943
+ +QR +AFPPN+VHSLD SHM+MTA+ GLHF+ +
Sbjct: 121 LHRQRQVSAFPPNYVHSLDSSHMLMTAIEMEKRGLHFSAV 160
>gi|224108381|ref|XP_002333403.1| predicted protein [Populus trichocarpa]
gi|222836443|gb|EEE74850.1| predicted protein [Populus trichocarpa]
Length = 201
Score = 144 bits (364), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 71/138 (51%), Positives = 93/138 (67%)
Query: 159 YKRIKLQEYREMKKRKFNLLRRRQVKQETEAWERMVDEYKELEAKMIEKRLAPNLPHIKG 218
+ R +L+ + RK +LRRRQVK E EAWE EYKEL M E +LAPNLP++K
Sbjct: 64 FSRRRLRANPGIGSRKHRVLRRRQVKIEAEAWELATKEYKELLKDMCEHKLAPNLPYMKS 123
Query: 219 LFLGWFGPLSEAIEREQKMQRTKKQKAAYAPHIELLPADKVAVIVMHKMMGLVMAGHEDR 278
LFLGWF P ++AI +EQ++ R K + YAP+ +LLPADK++VI MH++ +VM G E
Sbjct: 124 LFLGWFEPFTDAIAKEQELIRMGKSRQGYAPYFDLLPADKMSVIAMHQLAAMVMTGGEHG 183
Query: 279 CVQVVQAAVHIGMAIEQE 296
C +VV AA IG AIE E
Sbjct: 184 CARVVTAACMIGDAIELE 201
>gi|147779650|emb|CAN71736.1| hypothetical protein VITISV_011556 [Vitis vinifera]
Length = 168
Score = 144 bits (363), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 68/98 (69%), Positives = 79/98 (80%), Gaps = 9/98 (9%)
Query: 855 CAKVIASENQPVRWTTPLGLPVVQPYCKNERHLIRTSLQVLALQREGN---------LVK 905
++IASENQPVRWTTPLGLPVVQPY K RHLI+TSLQVL LQRE L+
Sbjct: 2 VVQIIASENQPVRWTTPLGLPVVQPYRKLGRHLIKTSLQVLTLQRETETVISTYLIFLIM 61
Query: 906 IRKQRTAFPPNFVHSLDGSHMMMTAVACRDAGLHFAGL 943
+++QRTAFPPNFVHSLDGSHMMMTA+AC+ AGL+FAG+
Sbjct: 62 VKRQRTAFPPNFVHSLDGSHMMMTAIACKKAGLNFAGV 99
>gi|88933964|sp|Q8L6J4.2|RPO1A_TOBAC RecName: Full=DNA-directed RNA polymerase 1A; AltName:
Full=NictaRpoT1-syl; AltName: Full=T7 bacteriophage-type
single subunit RNA polymerase 1A
Length = 155
Score = 144 bits (363), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 64/86 (74%), Positives = 76/86 (88%)
Query: 858 VIASENQPVRWTTPLGLPVVQPYCKNERHLIRTSLQVLALQREGNLVKIRKQRTAFPPNF 917
+IA EN PVRWTTPLGLPVVQPY K RHLI+TSLQ+L LQRE + V +++QRTAFPPNF
Sbjct: 1 IIAMENHPVRWTTPLGLPVVQPYRKLGRHLIKTSLQILTLQRETDKVMVKRQRTAFPPNF 60
Query: 918 VHSLDGSHMMMTAVACRDAGLHFAGL 943
VHSLDGSHMMMTA+AC+++GL FAG+
Sbjct: 61 VHSLDGSHMMMTAIACKESGLSFAGV 86
>gi|224116184|ref|XP_002331982.1| predicted protein [Populus trichocarpa]
gi|222832106|gb|EEE70583.1| predicted protein [Populus trichocarpa]
Length = 135
Score = 143 bits (360), Expect = 5e-31, Method: Compositional matrix adjust.
Identities = 67/123 (54%), Positives = 89/123 (72%)
Query: 174 KFNLLRRRQVKQETEAWERMVDEYKELEAKMIEKRLAPNLPHIKGLFLGWFGPLSEAIER 233
K+ +LRRRQVK E EAWE+ EYKEL M E +LAPNLP++K LFLGWF P ++AI +
Sbjct: 9 KYRVLRRRQVKIEAEAWEQATKEYKELLKDMCEHKLAPNLPYMKSLFLGWFEPFTDAIAK 68
Query: 234 EQKMQRTKKQKAAYAPHIELLPADKVAVIVMHKMMGLVMAGHEDRCVQVVQAAVHIGMAI 293
EQ++ RT K + YA + +LLPADK++VI MH++ +V+ G E C +VV AA IG AI
Sbjct: 69 EQELIRTGKSRQGYASYFDLLPADKMSVIAMHQLAAMVVTGGEHGCARVVTAACMIGDAI 128
Query: 294 EQE 296
EQ+
Sbjct: 129 EQD 131
>gi|133454|sp|P22372.1|RPOP_CLAPU RecName: Full=Probable DNA-directed RNA polymerase; AltName:
Full=ORF2
Length = 936
Score = 142 bits (358), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 136/541 (25%), Positives = 251/541 (46%), Gaps = 81/541 (14%)
Query: 441 VPMLVPPKKWKGYNKGGYL-----FLPSYVMRTHG----SRKQQEALKSVTGNCMKKVFE 491
+PM+V PK + GGYL +L S + + SR Q++ + ++E
Sbjct: 314 LPMIVAPKPYSKEEHGGYLLNDFDYLDSLLTKKLNMNDISRIQEKNI----------IYE 363
Query: 492 ALDTLGSTKWRVNKQVLSVLESIWVSGGNIAGLVDRNDVLIPEKPLSEDMTEVQKWKWSV 551
+++ + +T +++NK++L L +V + + L +++T+++
Sbjct: 364 SINKMMATAFQINKKLLKYLLEDYVFSKLLK---------LEGDDLYKNITQIEIDNMDK 414
Query: 552 RKAKKINQERHSQRCDTELKLSVARRMKDEEGFYYPHNLDFRGRAYPMHPHLNHLSSDVC 611
R +K Q+ SQ+ + + +A ++ Y+P LD RGR YP+ + ++ SS++
Sbjct: 415 RDNQKY-QQYLSQKLLRDYIIDIATVFQNVPELYFPLKLDHRGRLYPITAYFHYQSSELA 473
Query: 612 RGVLEFAEGRPLGKS---GLRWLKIHLANLFSGGVEKLSHDGRLAFVENHLYEIFDSAEN 668
+ +L FA + +S + +LK + A F ++K S+D RL +V+ + EN
Sbjct: 474 KALLLFAIPDTIERSDSISIDYLKAYGATCFGNKLDKKSYDKRLQWVDAN-------WEN 526
Query: 669 PINGSRWWL--TAEDPFQCLAACIN---LSEALKSSSPHSVISHLPIHQDGSCNGLQHYA 723
IN L AE+ F LA C+ L++ L S + ++LP+ DG+CNG QH
Sbjct: 527 IINYRNNVLLELAENKFMFLAYCLEIERLNQFLNDDSIENFKTYLPLQLDGTCNGFQHIV 586
Query: 724 ALGRNTLEAAAVNLVAGEK---PADVYSEIA--VRVHEIMKRDSNKDPSKHPQALLAKIL 778
L + +NL K P+D YS + + +H + K+D + D K +++
Sbjct: 587 LLSNEVKLYSQLNLDGKSKNQDPSDFYSFMINQLNIHLLNKKDVSTD--KEDIESYDRLI 644
Query: 779 IDQVDRKLVKQTVMTSVYGV-TFVGAREQIK--------RRLEEKGHITD-------DRQ 822
+ R +KQ +MT Y F A+ I+ + ++EKG IT +
Sbjct: 645 NLGLSRANIKQAIMTKPYNAKDFTVAKYIIETLLIASEDKYIDEKG-ITRTECWYKVNET 703
Query: 823 LFAAACYAAKVTLT-ALGEI----FEAARSIMGWLGDCAKVIASENQPVRWTTPLGLPVV 877
+ AC+ L + EI + +S++ +L ++++ N P+ W+ P GL V
Sbjct: 704 MTNVACFRDIYLLAKCINEILFLNYPQIKSLLEYLNSISEIMLKLNLPITWSLPTGLEVH 763
Query: 878 QPYCKNE------RHLIRTSLQVLALQREGNLVKIRKQRTAFPPNFVHSLDGSHMMMTAV 931
Q Y +++ + TSL L + + + K+ KQ+ A PN +HSLD + ++M
Sbjct: 764 QQYMRSKLKKTKPYTYLDTSL-TLKITDKIKMDKV-KQQIALMPNLIHSLDAASLIMLYF 821
Query: 932 A 932
A
Sbjct: 822 A 822
>gi|260878769|ref|ZP_05891124.1| putative DNA-directed RNA polymerase, bacteriophage type [Vibrio
parahaemolyticus AN-5034]
gi|308091103|gb|EFO40798.1| putative DNA-directed RNA polymerase, bacteriophage type [Vibrio
parahaemolyticus AN-5034]
Length = 724
Score = 142 bits (357), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 160/619 (25%), Positives = 250/619 (40%), Gaps = 127/619 (20%)
Query: 441 VPMLVPPKKWK-GYNKGG-YL--FLPSYVMRTHGSRKQQEALKSVTGNCMKKVFEALDTL 496
+PM+VPP +WK G GG YL + P + +T +R+ + L+ V + +
Sbjct: 33 LPMVVPPVEWKMGMTDGGAYLTSYSPLSLFKTR-NRELLKQLREVKSPEFVHFLDGHNVA 91
Query: 497 GSTKWRVNKQVLSVLESIWVSGGNIAGLVDRND----------------VLIPEKPLSED 540
T ++ + L++L+ I A L + ND +++ KP +
Sbjct: 92 SRTGHCIDVETLNLLKMIVKQPRKFAKLPNFNDEEAEMPLMEADLRTAQMILESKPKNIS 151
Query: 541 MTEVQK---------------WKWSVRKAKKINQERHSQRCDTELKLSVARRMKDEEGFY 585
E K W+ +KA++ E+ R + + +A +K + Y
Sbjct: 152 NHEYLKRLDGEHKVIVKALIDWRKKTQKARQKAVEKAGARSNLLRTIEIAESLKHYKSIY 211
Query: 586 YPHNLDFRGRAYPMHPHLNHLSSDVCRGVLEFAEGRPLGKSGLRWLKIHLANLFSGGVEK 645
+P D RGR Y P LN +D + ++ F E + +GK+G W++I++ANL G +K
Sbjct: 212 FPTQSDDRGRVYYATPLLNPQGADHEKALILFDEAKEVGKTGWDWMRINVANLM--GYDK 269
Query: 646 LSHDGRLAFVENHLYEIFDSAENPINGSRWWLTAEDPFQCLAACINLSEALKSSSPHSVI 705
+ R+A+VE H I NP++ RW T + PFQ L A L +A P
Sbjct: 270 ANFKKRIAYVEAHREMIESCVANPMSDFRWEDT-DKPFQFLQAARELVKAWSMEDPTKFK 328
Query: 706 SHLPIHQDGSCNGLQHYAALGR--------NTLEAAAVNLVAGEKPADVYSEIAVRVHEI 757
S + I D SC+GLQ L R N L A V+ E D+Y E A ++
Sbjct: 329 SRVGIACDASCSGLQILGTLTRCESSMKFTNCL-PAEVDENGEEFMQDIYGEAARIAADL 387
Query: 758 MKRDSN--------------------KDPSKHPQAL---LAKILIDQV------------ 782
M++ + KDP K + + LAKI DQ+
Sbjct: 388 MRKVAKGEKEARKYREADYEIKGRPLKDPQKEAERVAKQLAKIE-DQIAKDEEQRKADRE 446
Query: 783 ------------------DRKLVKQTVMTSVYGVTFVGAREQI---------KRRLEEKG 815
R +K+ MT YG G R+Q+ + +E G
Sbjct: 447 HAEKLLNWSYAMKDEYSFTRNWLKRNTMTFFYGSAQFGMRDQLIVDHLEPEYNKVIEVVG 506
Query: 816 HITDDRQLF----------AAACYAAKVTLTALGEIFEAARSIMGWLGDCAKVIASENQP 865
D L AA A + A+ + E +M L A++IA +
Sbjct: 507 KEGDPTSLGFPWATLKDAKDAATVAGNINYDAICAMAERPSRVMQSLQRYAELIAKSGKK 566
Query: 866 VRWTTPLGLPVVQPYCKNERHLIRTSL-----QVLALQREGNLVKIRKQRTAFPPNFVHS 920
+RWTTPLGL V Q Y K E++ I + + QR V Q+ PN+VHS
Sbjct: 567 MRWTTPLGLIVEQRYEKVEKYKIDSMITGQKRMQTTTQRSTGEVDANGQKNGAAPNWVHS 626
Query: 921 LDGSHMM-MTAVACRDAGL 938
LD S ++ + +V + GL
Sbjct: 627 LDASLLLKVLSVGFKKYGL 645
>gi|320158397|ref|YP_004190775.1| DNA-dependent RNA polymerase [Vibrio vulnificus MO6-24/O]
gi|319933709|gb|ADV88572.1| possible DNA-dependent RNA polymerase [Vibrio vulnificus MO6-24/O]
Length = 927
Score = 141 bits (355), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 99/343 (28%), Positives = 173/343 (50%), Gaps = 24/343 (6%)
Query: 425 VLEGLDRSAKHMLIP-YVPMLVPPKKW--KGYNKGGYLF---LPSYVMRTHGSRKQQEAL 478
+LE R + P Y PM+VPP+KW + +G YL P +++T + + L
Sbjct: 248 LLEETQREIARLARPTYAPMVVPPRKWSPETVRRGAYLTPAGRPLSMIKT----RNKSYL 303
Query: 479 KSVTGNCMKKVFEALDTLGSTKWRVNKQVLSVLESI------WVSGGNIAGL--VDRNDV 530
+ + M+KV++AL+ + T R+NK + + L++ W + + +D D
Sbjct: 304 RELQTAGMEKVYDALNRIQETPVRINKTIYNWLDTFLMQQLPWAMDIGLPAMHKLDIKD- 362
Query: 531 LIPEKP--LSEDMTEVQKWKWSVRKAKKINQERHSQRCDTELKLSVARRMKDEEGFYYPH 588
P +P L + V++++ + R+ + S+ + +A+ D + F+ P
Sbjct: 363 YTPTQPEGLPDSDYRVKEYQKACREFYLMEASERSKLSAMLGMMEMAKSYLDRDRFFVPW 422
Query: 589 NLDFRGRAYPMHPHLNHLSSDVCRGVLEFAEGRPLGKSGLRWLKIHLANLFSGGVEKLSH 648
D R R YP+ LN +D + + +FA+G LGK GL+WL IH+ANL GV+K++
Sbjct: 423 QGDTRMRVYPV-SKLNFQGADYVKALCQFADGVALGKHGLKWLMIHMANLM--GVDKVTF 479
Query: 649 DGRLAFVENHLYEIFDSAENPINGSRWWLTAEDPFQCLAACINLSEALKSSSPHSVISHL 708
+ R+ +V+ H +I A++P + ++A+ P Q +A L+EA + +S++
Sbjct: 480 EERVKWVKEHKAQIIALAKDPRECRDFLMSADKPMQAIACATELAEAWSMKNHEEFVSYI 539
Query: 709 PIHQDGSCNGLQHYAALGRNTLEAAAVNLVAGEKPADVYSEIA 751
PI DGSC+GLQ A R VNL+ + AD+Y +A
Sbjct: 540 PIALDGSCSGLQILGAALRCEKTGEHVNLIPAGRVADIYRVVA 582
>gi|13811419|gb|AAK40111.1| DNA polymerase [Pleurotus ostreatus]
Length = 993
Score = 140 bits (353), Expect = 4e-30, Method: Compositional matrix adjust.
Identities = 128/542 (23%), Positives = 238/542 (43%), Gaps = 123/542 (22%)
Query: 441 VPMLVPPKKWKGYNKGGYLFLPSYVMRTHGSRKQQEALKSVTGNCMKK--------VFEA 492
+PM+ P W + GG+L + + + +TG+ K +++
Sbjct: 414 LPMICKPNFWSENSYGGFL------------ENENKRIDVITGSSDHKHKIENRNLLYKV 461
Query: 493 LDTLGSTKWRVNKQVLSVLESIWVSGGNIAGLVDRNDVLIPEKPLSEDMTEVQKWKWSVR 552
++ + STK+ +N L+ +++ GN L+ E
Sbjct: 462 INLVSSTKFSINNLFLNYIKN----EGN---------YLLNE------------------ 490
Query: 553 KAKKINQERHSQRCDTELKLSVARRMKDEEGFYYPHNLDFRGRAYPMHPHLNHLSSDVCR 612
I E QR T L V+ + FY + D+RGR Y + + D+
Sbjct: 491 ----IKAEDEMQRIIT---LKVSETFSNT-PFYLNVHADWRGRIYTKSFFITYQGGDLTT 542
Query: 613 GVLEFAEGRPLGKSGLRWLKIHLANLFS-GGVEKLSHDGRLAFVENHLYEIFDSAENPIN 671
+LEF +G P+ + G +L I+ AN + + K S+ R+ +V + +I + ++ I
Sbjct: 543 ALLEFFDGEPINEKGKYYLYIYGANNHNMNKISKASYIDRINWVNQNYDKIINLDKDLI- 601
Query: 672 GSRWWLTAEDPFQCLAACINLSEALKSSSPHSVISHLPIHQDGSCNGLQHYAALGRNTLE 731
L+A++PF C+N+ E K +P+ V+ P+ D +C+G+QH AA+ ++
Sbjct: 602 -----LSADNPFTFATFCLNMREIHK--NPNFVLK-TPVFLDATCSGIQHLAAMLQDIEL 653
Query: 732 AAAVNL---VAGEKPADVYSEIAVRVHEIMKR--DSNKDPSKHPQALLAKILIDQVDRKL 786
+ VNL ++P D+Y +I + +++ + + N + S +++R +
Sbjct: 654 GSNVNLKKQYEKDEPGDLYEQITLPINKAINNLGEENNEYSHFKNI--------KLNRNI 705
Query: 787 VKQTVMTSVYGVTFVGAREQIKRRL--EEKGHITDDRQLFAAAC---------------- 828
+K+++MT VY V+ G EQ+K + E+K + + L + A
Sbjct: 706 LKRSIMTKVYNVSQFGIAEQLKEKFLNEKKEKLETNVNLISKALSLDIYKIQSNFSSLKK 765
Query: 829 YAA-----KVTLTALGEIFEAA--------------RSIMGWLGDCAKVIASENQPVRWT 869
YAA K+ + +IF+ A I + + K+I N P+ W
Sbjct: 766 YAAPGKDGKIIPLSTKDIFKIATIINDQIFVIYPSLNDIYSYFLNITKLILKLNIPLTWF 825
Query: 870 TPLGLPVVQPYCKNERHLIRTSL----QVLALQREGNLVKIRKQRTAFPPNFVHSLDGSH 925
TP GL + Q Y K++R+++ L + + ++ NL+ +KQ+ A PN +HSLD SH
Sbjct: 826 TPNGLKITQHYLKSKRNIVSIRLFGQTKKMVIKEWDNLLNTQKQKQAIIPNIIHSLDASH 885
Query: 926 MM 927
+M
Sbjct: 886 LM 887
>gi|10119854|dbj|BAB13497.1| RNA polymerase [Flammulina velutipes]
Length = 1168
Score = 140 bits (352), Expect = 4e-30, Method: Compositional matrix adjust.
Identities = 138/539 (25%), Positives = 234/539 (43%), Gaps = 94/539 (17%)
Query: 441 VPMLVPPKKWKGYNKGGYLF-LPSYVMRTHGSRKQQEALKSVTGNCMKKVFEALDTLGST 499
+P++ P KW GG+L P+ + + E ++ M ++ ++ L
Sbjct: 584 LPLICEPDKWGEKEIGGFLIKTPTNSSLIRNNNRNFETSHNIKN--MGVSYDVINQLNKI 641
Query: 500 KWRVNKQVLSVLESIWVSGGNIAGLVDRNDVLIPEKPLSEDMTEVQKWKWSVRKAKKINQ 559
K+RVNK + + LE+ GN I +K SE+ + Q
Sbjct: 642 KFRVNKLLYNYLEN----EGN----------YIWQKFDSENPDKFQ-------------- 673
Query: 560 ERHSQRCDTELKLSVARRMKDEEGFYYPHNLDFRGRAYPMHPHLNHLSSDVCRGVLEFAE 619
T + L +A+ E FY + +D+RGR Y LN SD+ +L FAE
Sbjct: 674 --------TYITLQIAKTFL-ENIFYLNNFIDWRGRIYNYSFGLNFQGSDLSSSLLVFAE 724
Query: 620 GRPLGKSGLRWLKIHLANLFSGGVEKLSHDGRLAFVENHLYEIFDSAENPINGSR-WWLT 678
G PL +SG+ + I+LAN + KLS + +FVE + + + + +N + L
Sbjct: 725 GEPLNESGIYYFYINLAN--NHNENKLS---KKSFVERYNW-VVKNYNKIVNLDKDLILG 778
Query: 679 AEDPFQCLAACINLSEALKSSSPHSVISHLPIHQDGSCNGLQHYAALGRNTLEAAAVNLV 738
AE F L+ + L E K + I + PI D +C+G+QH A L + A A NL
Sbjct: 779 AEKIFNFLSLALVLREYDKDK---NYIVNTPIFLDATCSGIQHVAGLIKEFDLATATNLS 835
Query: 739 AG---EKPADVYSEIAVRVHEIMKRDSNKDPSKHPQALLAKILIDQVDRKLVKQTVMTSV 795
+ P D+YS++ +V+ K ++ + L K+ ++ R+++K+++MT V
Sbjct: 836 PANQFDSPNDLYSDVVEKVN---KELNDFGYLNIEYSNLQKV---KLTREILKESIMTKV 889
Query: 796 YGVTFVGAREQIKRRL---------EEKGHITDDRQLFAAACYAAKV--------TLTAL 838
Y VT G EQIK+++ E+ + + ++ Y KV + +
Sbjct: 890 YNVTIYGMTEQIKKKIRFLKDPYIEREEIFVNNLQKKIQIGKYIYKVPSKIKGEDIILNI 949
Query: 839 GEIFEAAR--------------SIMGWLGDCAKVIASENQPVRWTTPLGLPVVQPYCKNE 884
+I++ A+ + +L AK+ N P+ W TP GL + Q Y K +
Sbjct: 950 KDIYKIAKILNETIFKEYKGLEKVYSFLKSMAKLTNKLNIPLNWITPAGLDITQKYNKTK 1009
Query: 885 RHLIRTSL----QVLALQREGNLVKIRKQRTAFPPNFVHSLDGSHMMMTAVACRDAGLH 939
I L + L L + + + KQ A PN +HSLD SH+ + R ++
Sbjct: 1010 TSSISIKLFGRTKQLNLTEKTDELNTFKQELAIIPNVIHSLDASHLYEIILETRKNNIN 1068
>gi|372217716|ref|YP_005087397.1| RNA polymerase [Cyanophage 9515-10a]
gi|310005637|gb|ADP00025.1| RNA polymerase [Cyanophage 9515-10a]
Length = 776
Score = 138 bits (348), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 128/502 (25%), Positives = 223/502 (44%), Gaps = 56/502 (11%)
Query: 438 IPYVPMLVPPKKWKGYNKGGYLFLPSYVMRTHGSRKQQEALKSVTGNCMKKVFEALDTLG 497
IP+ PML P W GGY + + +M+ H ++ ++ ++T + F L+ L
Sbjct: 236 IPW-PMLTEPNDWSNEKLGGYYY--NALMKGHELTRRGKS--TLTHGELPLKF--LNKLQ 288
Query: 498 STKWRVNKQVLSVLESIWVSGGNIAGLVDRNDVLIP------EKPLSEDMTEVQKWKWSV 551
++RVN VL+V + I VD+ ++P + + +KWK
Sbjct: 289 KVRYRVNNHVLNVAH--YCKDKEIK--VDKFIPIVPAYKPPPPPDIETNKEAHKKWKKET 344
Query: 552 RKAKKINQERHSQRCDTELKLSVARRMKDEEGFYYPHNLDFRGRAYPMHPHLNHLSSDVC 611
R A + + T +L A + K E+ FY + D+RGRAYP+ L +D
Sbjct: 345 RNAHNADCLNFKRSVRTRAQLETAEKFK-EDVFYLCWSFDYRGRAYPIQAFLTPQDTDFG 403
Query: 612 RGVLEFAEGRPLGKSGLRWLKIHLANLFSGGVEKLSHDGRLAFVENHLYEIFDSAENPIN 671
+ ++ FA+ P+ + WL I +A + G++K + D R+A+ ++ I A +P
Sbjct: 404 KALIRFADESPVTQDAEDWLAIQVATTY--GLDKATMDERIAWSLDNHELITLIATDPTG 461
Query: 672 GSRWWLTAEDPFQCLAACINLSEALKSSSPHSVISHLPIHQDGSCNGLQHYAALGRNTLE 731
W +A++P+Q ++AC + + L + D +C+GLQ A L ++
Sbjct: 462 CIPEWESADEPWQFMSACHEYYHCIIKKD--KTTTGLMVAVDATCSGLQVLAGLAKDQST 519
Query: 732 AAAVNLVAGEKPADVYSEIAVRVHEIMKRDSNKDPSKHPQALLAKILIDQVDRKLVKQTV 791
A+ VN+ + P+D Y +A + L + + + R K+TV
Sbjct: 520 ASLVNVCPADTPSDAYKAVA----------------NEAKKYLPERMHSWMTRSTCKRTV 563
Query: 792 MTSVYGVTFVGAREQIKRRLEEKG--HITDDRQLFAAACYAAKVTLTALGEIFEAARSIM 849
MT Y T +R+ IK+ L+E+G D+ A Y ++ I +M
Sbjct: 564 MTIPYNATKDSSRKYIKQSLKEQGIDPTKDELTQVVNAVYQ------SMDAIVPGPMQVM 617
Query: 850 GWLGD-CAKVIASENQPVRWTTPLGLPVVQPYCKNERHLIRTSLQ-----VLALQR-EGN 902
W+ + I + V W TP G V Q +++ ++ R LQ V++L + G
Sbjct: 618 RWIKQHVGQYIRNGATEVEWVTPSGFTVNQR--RDKVNIQRVQLQLLGSIVISLDKGSGT 675
Query: 903 LVKIRKQRTAFPPNFVHSLDGS 924
IR +++ PNF+HSLD S
Sbjct: 676 PCPIR-HKSSTAPNFIHSLDAS 696
>gi|116793061|gb|ABK26601.1| unknown [Picea sitchensis]
Length = 81
Score = 137 bits (346), Expect = 2e-29, Method: Composition-based stats.
Identities = 60/78 (76%), Positives = 67/78 (85%)
Query: 578 MKDEEGFYYPHNLDFRGRAYPMHPHLNHLSSDVCRGVLEFAEGRPLGKSGLRWLKIHLAN 637
MKDEE FYYPHNLDFRG AYPMH +LNHL S+VCRG+LEF EGRPLGK+ L WLKIHLAN
Sbjct: 1 MKDEECFYYPHNLDFRGCAYPMHLYLNHLGSNVCRGLLEFVEGRPLGKTRLYWLKIHLAN 60
Query: 638 LFSGGVEKLSHDGRLAFV 655
L+ GGV+K S +GRL FV
Sbjct: 61 LYGGGVDKYSFEGRLTFV 78
>gi|262155779|ref|ZP_06028902.1| DNA-directed RNA polymerase [Vibrio cholerae INDRE 91/1]
gi|379741344|ref|YP_005333313.1| DNA-directed RNA polymerase [Vibrio cholerae IEC224]
gi|421332625|ref|ZP_15783103.1| DNA-dependent RNA polymerase family protein [Vibrio cholerae
CP1046(19)]
gi|424601712|ref|ZP_18040858.1| DNA-dependent RNA polymerase family protein [Vibrio cholerae
CP1047(20)]
gi|262030370|gb|EEY49011.1| DNA-directed RNA polymerase [Vibrio cholerae INDRE 91/1]
gi|378794854|gb|AFC58325.1| DNA-directed RNA polymerase [Vibrio cholerae IEC224]
gi|395929232|gb|EJH39982.1| DNA-dependent RNA polymerase family protein [Vibrio cholerae
CP1046(19)]
gi|395976865|gb|EJH86304.1| DNA-dependent RNA polymerase family protein [Vibrio cholerae
CP1047(20)]
Length = 758
Score = 137 bits (346), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 133/482 (27%), Positives = 206/482 (42%), Gaps = 87/482 (18%)
Query: 541 MTEVQKWKWSVRKAKKINQERHSQRCDTELKLSVARRMKDEEGFYYPHNLDFRGRAYPMH 600
++ +W+ + +KA++ + E+ R + + +A +K Y+P D RGR Y
Sbjct: 203 LSTFNQWRTAKQKARQRSVEQAGARSNLMRTIEIADSLKMYTSIYFPTQSDDRGRVYYAT 262
Query: 601 PHLNHLSSDVCRGVLEFAEGRPLGKSGLRWLKIHLANLFSGGVEKLSHDGRLAFVENHLY 660
P LN +D + ++ F + +GK+G WL+I+++NL G +K + R+A+VE H
Sbjct: 263 PLLNPQGADHEKALILFDVAKEIGKTGWDWLRINVSNLM--GYDKGNFKQRIAYVEAHRD 320
Query: 661 EIFDSAENPINGSRWWLTAEDPFQCLAACINLSEALKSSSPHSVISHLPIHQDGSCNGLQ 720
I NP++ RW T + PFQ L A L +A K P S + I D SC+GLQ
Sbjct: 321 MIESCVANPMSDYRWEHT-DKPFQFLQAARELVQAWKMEDPTKFKSRVGIACDASCSGLQ 379
Query: 721 HYAALGR--------NTLEAAAVNLVAGEKPADVYSEIA---------VRVHEIMKRDSN 763
L R N L A V+ E D+Y E A V++ E+ R N
Sbjct: 380 ILGTLTRCESSMKFTNCL-PAEVDENGEEFMQDIYGEAARIAAELMRKVQLGELEARKYN 438
Query: 764 ---------KDPSKHPQAL---LAKI----LIDQVDRKL--------------------- 786
KDP+K Q + LAKI D+ RK
Sbjct: 439 EYEVTGRPLKDPAKEAQRIAKQLAKIEKQKAKDEAQRKADREHAEKLLNWSYAMKDEYSF 498
Query: 787 ----VKQTVMTSVYGVTFVGAREQI---------KRRLEEKGHITDDRQLF--------- 824
+K+ MT YG G R+Q+ + +E G D L
Sbjct: 499 TRNWLKRNTMTFFYGSAQFGMRDQLIVDHLEPEFNKVIEVVGKDGDPTSLGFPWATLKDA 558
Query: 825 -AAACYAAKVTLTALGEIFEAARSIMGWLGDCAKVIASENQPVRWTTPLGLPVVQPYCKN 883
AA A + A+ ++ E +M L A++IA + +RWTTPLGL V Q Y K
Sbjct: 559 KDAATVAGNINYEAICKMAERPARVMQSLQRYAELIAKSGRKMRWTTPLGLIVEQRYEKV 618
Query: 884 ERHLIRTSLQ-----VLALQREGNLVKIRKQRTAFPPNFVHSLDGSHMM-MTAVACRDAG 937
E+ + + + QR V Q+ PN+VHSLD S ++ + ++ ++ G
Sbjct: 619 EKFKVDSMITGQKRIQTTSQRHTGEVDANGQKNGAAPNWVHSLDASLLLKVLSLGSKNHG 678
Query: 938 LH 939
L+
Sbjct: 679 LN 680
>gi|320156443|ref|YP_004188822.1| DNA-directed RNA polymerase [Vibrio vulnificus MO6-24/O]
gi|319931755|gb|ADV86619.1| DNA-directed RNA polymerase [Vibrio vulnificus MO6-24/O]
Length = 758
Score = 137 bits (346), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 133/482 (27%), Positives = 206/482 (42%), Gaps = 87/482 (18%)
Query: 541 MTEVQKWKWSVRKAKKINQERHSQRCDTELKLSVARRMKDEEGFYYPHNLDFRGRAYPMH 600
++ +W+ + +KA++ + E+ R + + +A +K Y+P D RGR Y
Sbjct: 203 LSTFNQWRTAKQKARQRSVEQAGARSNLMRTIEIADSLKMYTSIYFPTQSDDRGRVYYAT 262
Query: 601 PHLNHLSSDVCRGVLEFAEGRPLGKSGLRWLKIHLANLFSGGVEKLSHDGRLAFVENHLY 660
P LN +D + ++ F + +GK+G WL+I+++NL G +K + R+A+VE H
Sbjct: 263 PLLNPQGADHEKALILFDVAKEIGKTGWDWLRINVSNLM--GYDKGNFKKRIAYVEAHRE 320
Query: 661 EIFDSAENPINGSRWWLTAEDPFQCLAACINLSEALKSSSPHSVISHLPIHQDGSCNGLQ 720
I NP++ RW T + PFQ L A L +A K P S + I D SC+GLQ
Sbjct: 321 MIESCVANPMSDYRWEHT-DKPFQFLQAARELVQAWKMEDPTKFKSRVGIACDASCSGLQ 379
Query: 721 HYAALGR--------NTLEAAAVNLVAGEKPADVYSEIA---------VRVHEIMKRDSN 763
L R N L A V+ E D+Y E A V++ E+ R N
Sbjct: 380 ILGTLTRCESSMKFTNCL-PAEVDENGEEFMQDIYGEAARIAAELMRKVQLGELEARKYN 438
Query: 764 ---------KDPSKHPQAL---LAKI----LIDQVDRKL--------------------- 786
KDP+K Q + LAKI D+ RK
Sbjct: 439 EYEVTGRPLKDPAKEAQRIAKQLAKIEKQKAKDEAQRKADREHAEKLLNWSYAMKDEYSF 498
Query: 787 ----VKQTVMTSVYGVTFVGAREQI---------KRRLEEKGHITDDRQLF--------- 824
+K+ MT YG G R+Q+ + +E G D L
Sbjct: 499 TRNWLKRNTMTFFYGSAQFGMRDQLIVDHLEPEFNKVIEVVGKDGDPTSLGFPWATLKDA 558
Query: 825 -AAACYAAKVTLTALGEIFEAARSIMGWLGDCAKVIASENQPVRWTTPLGLPVVQPYCKN 883
AA A + A+ ++ E +M L A++IA + +RWTTPLGL V Q Y K
Sbjct: 559 KDAATVAGNINYEAICKMAERPARVMQSLQRYAELIAKSGRKMRWTTPLGLIVEQRYEKV 618
Query: 884 ERHLIRTSLQ-----VLALQREGNLVKIRKQRTAFPPNFVHSLDGSHMM-MTAVACRDAG 937
E+ + + + QR V Q+ PN+VHSLD S ++ + ++ ++ G
Sbjct: 619 EKFKVDSMITGQKRIQTTSQRPTGEVDANGQKNGAAPNWVHSLDASLLLKVLSLGSKNHG 678
Query: 938 LH 939
L+
Sbjct: 679 LN 680
>gi|224105535|ref|XP_002333804.1| predicted protein [Populus trichocarpa]
gi|222838549|gb|EEE76914.1| predicted protein [Populus trichocarpa]
Length = 177
Score = 137 bits (344), Expect = 3e-29, Method: Compositional matrix adjust.
Identities = 80/217 (36%), Positives = 125/217 (57%), Gaps = 53/217 (24%)
Query: 324 KEKELLRKRVNSLIKSKRVMEAQKLLK-NEETKPWGRDTQAKLGSRLVELLIETAYVQHP 382
+E+E LRK+V LIK +++ +K++K +++KP D +AK+GSRL+ELL++TAY+Q P
Sbjct: 2 EEQENLRKKVTDLIKKQKLPAVRKIVKWKDDSKPCNADARAKVGSRLIELLLQTAYIQPP 61
Query: 383 VNPADYSPPDVRPAFRHRFKTILKHPGQKTTKRYGVVECDPLVLEGLDRSAKHMLIPYVP 442
+ SP + RPAF H F+ + + +K K+Y V++CDPLVL+GL+++
Sbjct: 62 CDQLADSPSEPRPAFVHTFRNV-SYVNKKGVKKYVVIQCDPLVLKGLEKT---------- 110
Query: 443 MLVPPKKWKGYNKGGYLFLPSYVMRTHGSRKQQEALKSVTGNCMKKVFEALDTLGSTKWR 502
+F+ + V ALDTLG+T+WR
Sbjct: 111 ----------------VFIENMV-------------------------NALDTLGNTRWR 129
Query: 503 VNKQVLSVLESIWVSGGNIAGLVDRNDVLIPEKPLSE 539
VNK+VLSV++ IW +GG +A LVD +DV +PE+P +E
Sbjct: 130 VNKRVLSVVDRIWSNGGCLADLVDHSDVPLPERPETE 166
>gi|158251728|ref|YP_001504342.1| DNA-directed RNA polymerase [Pleurotus ostreatus]
gi|122893329|gb|ABM67601.1| DNA-directed RNA polymerase [Pleurotus ostreatus]
Length = 1204
Score = 136 bits (342), Expect = 6e-29, Method: Compositional matrix adjust.
Identities = 125/528 (23%), Positives = 241/528 (45%), Gaps = 82/528 (15%)
Query: 427 EGLDRSAKHMLIPY--VPMLVPPKKWKGYNKGGYLF----LPSYVMRTHGSRKQQEALKS 480
E LD K+ ++ +PML P W GG+L + S + GS Q +++S
Sbjct: 620 EYLDFINKNFILYNHSLPMLCKPNLWNEKEYGGFLDNKEKMNSVIT---GSIHQNHSVES 676
Query: 481 VTGNCMKKVFEALDTLGSTKWRVNKQVLSVLESIWVSGGNIAGLVDRNDVLIPEKPLSED 540
+++++++ L S K ++N ++L+ LES G I +N + +D
Sbjct: 677 -----KDELYKSINKLNSVKLKINNELLTYLES---EGLYILNYYFKNKI--------KD 720
Query: 541 MTEVQKWKWSVRKAKKINQERHSQRCDTELKLSVARRMKDEEGFYYPHNLDFRGRAYPMH 600
T+ ++Q T LKL+ + K + Y N D+RGR Y
Sbjct: 721 QTD------------------YNQNLIT-LKLANSYS-KYQNPIYISCNADWRGRIYTQS 760
Query: 601 PHLNHLSSDVCRGVLEFAEGRPLGKSGLRWLKIHLANLFS-GGVEKLSHDGRLAFVENHL 659
+L++ D+ ++ EG L +SGL + I+ AN + + K S D R+ +V+ +
Sbjct: 761 FYLSYQGGDLSSSLINLFEGNSLNESGLNYFYIYGANCHNENDLSKESFDSRINWVKTNY 820
Query: 660 YEIFDSAENPINGSRWWLTAEDPFQCLAACINLSEALKSSSPHSVISHLPIHQDGSCNGL 719
+I + ++ I L A++ F + C+N+ K + ++PI+ D +C+G+
Sbjct: 821 DKIINLNKDLI------LKADNLFLFTSFCLNMK---KIHEDKNTKIYMPIYLDATCSGI 871
Query: 720 QHYAALGRNTLEAAAVNLVA---GEKPADVYSEIAVRVHEIMKRDSNKDPSKHPQALLAK 776
QH ++L + VNL + +K D+Y+E+ ++ + + ++P K+P+ K
Sbjct: 872 QHVSSLILDLDSGKKVNLTSQTKDQKVGDIYTELLKPINLAINQKGIENPEKYPEFRHIK 931
Query: 777 ILIDQVDRKLVKQTVMTSVYGVTFVGAREQIKRRLEEKGHITDDRQLFAAACYAAKVTLT 836
+ RK +K +MT +Y VT +G +Q++ E+ ++ + V ++
Sbjct: 932 L-----KRKNIKTPIMTKIYNVTVIGIADQLRNSFEKVK--INNNTYYKVPSSNGSVRIS 984
Query: 837 AL----------GEIFE---AARSIMGWLGDCAKVIASENQPVRWTTPLGLPVVQPYCKN 883
L EIF+ + +++ + K+ + P+ W TP G+ + Q Y ++
Sbjct: 985 YLDTFEIAQIINNEIFKNLPSLKTVYDYFKSIVKICLMFSIPISWFTPSGVKITQSYTRS 1044
Query: 884 ERHLIRTSLQV---LALQRE-GNLVKIRKQRTAFPPNFVHSLDGSHMM 927
++ + S + A+ RE ++ +KQ A PN + SLD SH+M
Sbjct: 1045 IQNKVSISFKNKTKSAILREFTGIIDNKKQAQAIIPNIIRSLDASHLM 1092
>gi|1236344|gb|AAB01084.1| RNA polymerase, partial [Naegleria fowleri]
Length = 123
Score = 135 bits (340), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 61/124 (49%), Positives = 89/124 (71%), Gaps = 3/124 (2%)
Query: 794 SVYGVTFVGAREQIKRRLEEKGHITDDRQLFAAACYAAKVTLTALGEIFEAARSIMGWLG 853
SVYGVTFVGAREQI++RL+EK + +D +FA A Y A +TL +LGE+F +A++IM WL
Sbjct: 1 SVYGVTFVGAREQIQKRLKEKKEVPED-DVFACASYLASITLKSLGEVFSSAQNIMEWLN 59
Query: 854 DCAKVIASENQPVRWTTPLGLPVVQPYCKNERHLIRTSLQVLALQREGNLVKIR--KQRT 911
DCA +I+S + PV WTTPLGLPV+QPY +++T +Q + + + + + +Q++
Sbjct: 60 DCALLISSSDNPVTWTTPLGLPVIQPYRSKRTKVVKTVMQCVTISDSSDKLPVSSTRQKS 119
Query: 912 AFPP 915
AFPP
Sbjct: 120 AFPP 123
>gi|464682|sp|P33539.1|RPOP_AGABT RecName: Full=Probable DNA-directed RNA polymerase
gi|1325997|emb|CAA44799.1| RNA Polymerase [Agaricus bitorquis]
Length = 1102
Score = 132 bits (333), Expect = 7e-28, Method: Compositional matrix adjust.
Identities = 123/498 (24%), Positives = 227/498 (45%), Gaps = 77/498 (15%)
Query: 489 VFEALDTLGSTKWRVNKQVLSVLESIWVSGGNIAGLVDRNDVLIPEKPLSEDMTEVQKWK 548
++ +++ L S K+++NK +L+ + + W + + L ++L KP+ E
Sbjct: 527 LYSSINYLNSIKFKINKAMLNFILAEWDNKD--SKLFKGYNML---KPILE--------- 572
Query: 549 WSVRKAKKINQERHSQRCDTELK---LSVARRMKDEEGFYYPHNLDFRGRAYPMHPHLNH 605
+K+I +E+ S L +S+A KD E FY P +DFRGR YP+ ++++
Sbjct: 573 ---TDSKEIKEEKVSSNSKYTLYSNIISLASLYKDNE-FYLPVYVDFRGRVYPLSNYISY 628
Query: 606 LSSDVCRGVLEFAEGR-PLGKSGLRWLKIHLANLFSGGVEKLSHDGRLAFVENHLYEIFD 664
D+ R ++ FA+ + L SG L ++LANL G +KL RL V+ + E +
Sbjct: 629 QGGDLARSLILFADTKCVLNNSGKECLNVYLANL--AGYDKLPWSERLTKVDGIIKEYLE 686
Query: 665 SAENPINGSRWWLTAED----PFQCLAACINLSEALKSSSPHSVISHLPIHQDGSCNGLQ 720
S N I+ +++ D PFQ ++ I ++ L S+P + IS+ PI D SC+G+Q
Sbjct: 687 S--NEISNTKYIEDNIDKISEPFQFIS--IMYAKLLSISNPKANISN-PILFDASCSGIQ 741
Query: 721 HYAALGRNTLEAAAVNLVAG------EKPADVYSEIAVRVHEIMKRDSNKDPSKHPQALL 774
H AAL A+ VNL + P D Y+ + +I + N D ++
Sbjct: 742 HIAALTLEKELASNVNLYTDSSNPKEDYPQDFYT---YALEKIRDKLINSDITELRDI-- 796
Query: 775 AKILIDQVDRKLVKQTVMTSVYGVTFVGAREQIKRRLEEKG------------------H 816
+++RK++K++VMT Y ++ G E + K
Sbjct: 797 ------KLNRKIIKRSVMTIPYNISMAGIGEHLMEHFTVKTVLKYRYVVIPGSATISSKD 850
Query: 817 ITDDRQLFAAACYAAKVTLTALGEIFEAARSIMGWLGDCAKVIASENQPVRWTTPLGLPV 876
+ D + C K+ L + + R + + + N P+ W TP GL +
Sbjct: 851 VYLDYSKYGQLC---KIIYFVLTKELPSLRLLSNYFESMIDIFVKLNIPITWVTPSGLKI 907
Query: 877 VQPYCKNERHLIRTSL----QVLALQREGNLVKIRKQRTAFPPNFVHSLDGS--HMMMTA 930
K + ++TS+ ++ ++ + + + + +F PNF+HSLD S H+++ +
Sbjct: 908 KYTNIKFKPQKVKTSVLNTSKITTIKLPTDSLDVLSTKRSFMPNFIHSLDASNVHLLLNS 967
Query: 931 VACRDAGLHFAGLSFQSA 948
V+ ++ ++ F S
Sbjct: 968 VSYKNLPVYTVHDCFAST 985
>gi|21425671|emb|CAC95023.1| mitochondrial RNA polymerase [Nicotiana tabacum]
Length = 173
Score = 132 bits (332), Expect = 9e-28, Method: Compositional matrix adjust.
Identities = 64/104 (61%), Positives = 76/104 (73%), Gaps = 18/104 (17%)
Query: 858 VIASENQPVRWTTPLGLPVVQPYCKNERHLIRTSLQVLALQREGNLVK------------ 905
+IA EN PVRWTTPLGLPVVQPY K RHLI+TSLQ+L LQRE + V
Sbjct: 1 IIAMENHPVRWTTPLGLPVVQPYRKLGRHLIKTSLQILTLQRETDKVALHPLTCLLPFCF 60
Query: 906 ------IRKQRTAFPPNFVHSLDGSHMMMTAVACRDAGLHFAGL 943
+++QRTAFPPNFVHSLDGSHMMMTA+AC+++GL FAG+
Sbjct: 61 FFIDVMVKRQRTAFPPNFVHSLDGSHMMMTAIACKESGLSFAGV 104
>gi|149940226|emb|CAJ13817.1| DNA-directed RNA polymerase 1 [Chrysanthemum x morifolium]
Length = 174
Score = 130 bits (326), Expect = 4e-27, Method: Compositional matrix adjust.
Identities = 70/112 (62%), Positives = 78/112 (69%), Gaps = 21/112 (18%)
Query: 829 YAA----KVTLTALGEIFEAARSIMGWLGDCAKV-------IASENQPVRWTTPLGLPVV 877
YAA + TLTALGE+FEAARSIM WLGDCAKV IA +N PV+WTTPLGLPVV
Sbjct: 7 YAALGRDQTTLTALGEMFEAARSIMTWLGDCAKVYIIFIHVIAMKNNPVQWTTPLGLPVV 66
Query: 878 QPYCKNERHLIRTSLQVLALQREGNLVKIRKQRTAFPPNFVHSLDGSHMMMT 929
QPY K RHL+R + L K++TAFPPNFVHSLDGSHMMMT
Sbjct: 67 QPYRKLGRHLVRHLFKYLH----------YKEKTAFPPNFVHSLDGSHMMMT 108
Score = 83.2 bits (204), Expect = 7e-13, Method: Compositional matrix adjust.
Identities = 39/101 (38%), Positives = 57/101 (56%)
Query: 168 REMKKRKFNLLRRRQVKQETEAWERMVDEYKELEAKMIEKRLAPNLPHIKGLFLGWFGPL 227
R + + F L ++ + +D + M E++LAPNLP++K LFLGWF PL
Sbjct: 74 RHLVRHLFKYLHYKEKTAFPPNFVHSLDGSHMMMTDMCEQKLAPNLPYVKSLFLGWFEPL 133
Query: 228 SEAIEREQKMQRTKKQKAAYAPHIELLPADKVAVIVMHKMM 268
AI EQ + + K + AYAP + LPAD + +I MHK+M
Sbjct: 134 KNAISGEQDLCKEGKNRGAYAPQFDQLPADMMTIITMHKLM 174
>gi|49147034|ref|YP_025889.1| DNA-dependent RNA polymerase [Moniliophthora perniciosa]
gi|34538679|gb|AAQ74287.1| DNA-dependent RNA polymerase [Moniliophthora perniciosa]
Length = 1028
Score = 129 bits (324), Expect = 8e-27, Method: Compositional matrix adjust.
Identities = 137/540 (25%), Positives = 225/540 (41%), Gaps = 119/540 (22%)
Query: 442 PMLVPPKKWKGYNKGGYLFLPSYVMRTHGSRKQQEALKSVTGNCMKK--------VFEAL 493
PM+V P W GG+L S K +E L +TGN +++ +
Sbjct: 446 PMIVNPNSWSKDTYGGFL-----------SNKSRE-LDIITGNESHDHIIENKALIYQTV 493
Query: 494 DTLGSTKWRVNKQVLSVLESIWVSGGNIAGLVDRNDVLIPEKPLSEDMTEVQKWKWSVRK 553
+ L S K+ VN +L + S G I + ND L
Sbjct: 494 NYLNSIKFGVNNMLLDYITS--EEGKYILEHIKPNDAL---------------------- 529
Query: 554 AKKINQERHSQRCDTELKLSVARRMKDEEGFYYPHNLDFRGRAYPMHPHLNHLSSDVCRG 613
QR T L VA+ + + FY + D+RGR Y L++ S D+
Sbjct: 530 ----------QRTIT---LEVAK-LYERGPFYLNTHADWRGRIYTQSFFLSYQSGDLSLS 575
Query: 614 VLEFAEGRPLGKSGLRWLKIHLANLFS-GGVEKLSHDGRLAFVENHLYEIFDSAENPING 672
+L F EG + + G +L I+ AN + + K S R+ +V + +I + I
Sbjct: 576 LLNFWEGEKVNEEGKFYLYIYGANSHNQNKISKASFKDRIDWVNKNYDKIINLDRELI-- 633
Query: 673 SRWWLTAEDPFQCLAACINLSEALKSSSPHSVISHLPIHQDGSCNGLQHYAALGRNTLEA 732
LTAE PF A C+N+ E ++P+++I P+ D SC+G+QH AAL ++
Sbjct: 634 ----LTAESPFIFTAFCLNMREI--HNNPNALIK-TPVFLDASCSGIQHLAALMKDLELG 686
Query: 733 AAVNLVAG---EKPADVYSEIAVRVHEIMKRDSNKDPSKHPQALLAKILIDQVDRKLVKQ 789
A NL+ EKP D+Y R+ E + + NK ++ + + ++ ++ RK VK
Sbjct: 687 ANTNLIESTIEEKPGDIYE----RLLEPINKAINKFGEENIEYSMLSLV--KLTRKEVKV 740
Query: 790 TVMTSVYGVTFVGAREQIK---RRLEE-----------KGHITDD----------RQLFA 825
+MT VY VT G Q++ + ++E K I +D + F
Sbjct: 741 PIMTKVYNVTKYGISNQLQSIFKNIDEEIFVDEFYTKPKNEIHNDFLDSFKSNKSKTKFI 800
Query: 826 AACYAAKVTLTALGEIFEAA--------------RSIMGWLGDCAKVIASENQPVRWTTP 871
K + EI++ A I + + AK+ P+ W TP
Sbjct: 801 CKGKDGKYIRLSNKEIYKIASIINDQIFVVFPSLNEIYNYFIELAKLAVKLELPMTWITP 860
Query: 872 LGLPVVQPYCKNERHLIRTSL----QVLALQREGNLVKIRKQRTAFPPNFVHSLDGSHMM 927
GL + Q Y K ++ +I S+ + + ++ + + KQ + PN +HSLD +H+M
Sbjct: 861 SGLKITQNYFKRKKKVISISIFGKSKKIVIKENTDKIDKGKQIQSIIPNIIHSLDATHLM 920
>gi|478704|pir||S26945 DNA-directed RNA polymerase (EC 2.7.7.6) - Podospora anserina
mitochondrion plasmid pAL2-1
Length = 948
Score = 127 bits (320), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 138/529 (26%), Positives = 240/529 (45%), Gaps = 78/529 (14%)
Query: 441 VPMLVPPKKWKGYNKGGYLFLPSYVMRTHGSRKQQEALKSVTGNC-MKKVFEALDTLGST 499
+PM+V PK + GGYL Y+ K++ L+ T ++F+ ++ L S
Sbjct: 342 MPMMVKPKPYTTRVNGGYLSNDLYM--NENIVKEKWNLRDNTQILHFNQMFDLVNNLSSM 399
Query: 500 KWRVNKQVLSVLESIWVSGGNIAGLVDRNDVLIP--EKPLSEDMTEVQKWKWSVRK--AK 555
+++N VL +E+ G + +N+++ P PL++ +K K + AK
Sbjct: 400 GYKINTDVLDFIETY---GSDYF----KNELMDPRYSHPLTKKSKLTKKEKMELDSFLAK 452
Query: 556 KINQERHSQRCDTELKLSVARRMKDEEGFYYPHNLDFRGRAYPMHPHLNHLSSDVCRGVL 615
K QE L +A ++ F+ P N DFRGR Y +LN+ S+D+ + +L
Sbjct: 453 KETQENM---------LGLAEMFRNIPEFFMPVNADFRGRVYCTPEYLNYQSTDLAKSLL 503
Query: 616 EFAE-GRPLGKS--GLRWLKIHLANLFSGGVEKLSHDGRLAFVENHLYEIFDSAENPING 672
F++ GR K L +LK++ + F G++KLS + R+ +V+ +L ++ +N NG
Sbjct: 504 LFSKPGRMYKKDYIALSYLKMYGGSSF--GLDKLSANDRIKWVDKNL----NNMKNYRNG 557
Query: 673 SRWWLTAEDPFQCLAACINLSEALKSSSPHSVI---SHLPIHQDGSCNGLQHYAALGRNT 729
+ A++ F LA CI + L H V ++LPI D +CNG QH + L ++
Sbjct: 558 -KLIKEAKNKFLFLAFCIEYNRYLNCLDNHDVSWFDTYLPIQMDATCNGFQHLSLLSLDS 616
Query: 730 LEAAAVNLVAG---EKPADVYSEIAVRVHEIMKRDS--NKDPSKHPQALLAKILIDQVDR 784
+ +NL + P D Y+ + V + +K ++ NK+ + +++ ++ R
Sbjct: 617 NLSKELNLSESTWDDVPKDFYTFLVVCFIDYLKTETLENKNLTPKESESYNRLINMKIIR 676
Query: 785 KLVKQTVMTSVYGVTFVGAREQIKRRLEEKGHITDDRQLFAAACYAAK---------VTL 835
+++K+ +MT Y V+ ++ E +D L Y K +
Sbjct: 677 EIIKKGIMTMPYNVSNFSTINYMREGFE-----LEDNSL---EWYIYKNEPSMRLKSLDF 728
Query: 836 TALG--------EIFEAARSIMGWLGDCAKVIASENQPVRWTTPLGLPVVQPYCKNERHL 887
T LG E F ++ +L A+V P+ WT P GL V Q Y +
Sbjct: 729 TVLGKGLRKVLHEKFHKLDTLTKYLDQVARVCTLLEIPIMWTLPTGLVVRQSYMMRDEVR 788
Query: 888 I--------RTSLQVLALQREGNLVKIRKQRTAFPPNFVHSLDGSHMMM 928
+ + S++VL + N KQ TAF PN VHSLD + + +
Sbjct: 789 MKPFNHSNKKFSMKVLNKTQFNN----SKQITAFMPNLVHSLDAASLTL 833
>gi|13959703|sp|P33541.2|RPOP_NEUIN RecName: Full=Probable DNA-directed RNA polymerase
gi|578158|emb|CAA36326.1| RNA polymerase [Neurospora intermedia]
Length = 811
Score = 127 bits (319), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 129/526 (24%), Positives = 223/526 (42%), Gaps = 102/526 (19%)
Query: 441 VPMLVPPKKWKGYNKGGYLFLPSYVMRTHGSRKQQEALKSVTGN--------CMKKVFEA 492
+PM+ PP W +GG L + + Q E+L V G+ K++
Sbjct: 243 LPMVCPPLPWGHGIRGGNL--------INLTDTQDESL--VVGSFHHRHKIAITDKLYNV 292
Query: 493 LDTLGSTKWRVNKQVLSVLESIWVSGGNIAGLVDRNDVLIPEKPLSEDMTEVQKWKWSVR 552
++ L + K+++N +LS L++ G I + +
Sbjct: 293 INKLNAFKFKINGDLLSYLQN---EGSFILDFYK-----------------------NTK 326
Query: 553 KAKKINQERHSQRCDTELKLSVARRMKDEEGFYYPHNLDFRGRAYPMHPHLNHLSSDVCR 612
K IN + + +AR + FY N+D+RGR Y +L++ S++
Sbjct: 327 KDTYINNM---------ITIDIARTYLNTP-FYLNVNIDWRGRIYTQSFYLDYQGSELSL 376
Query: 613 GVLEFAEGRPLGKSGLRWLKIHLANLFSGG--VEKLSHDGRLAFVENHLYEIFDSAENPI 670
++ EG+ L + GL + ++ AN+++ G K S R +V +L I + I
Sbjct: 377 ALINLFEGKKLDEKGLFFFYVYGANIYNDGGKFSKKSFQDRFNWVVENLDNIIAMDKEFI 436
Query: 671 NGSRWWLTAEDPFQCLAACINLSEALKSSSPHSVISHLPIHQDGSCNGLQHYAALGRNTL 730
L AE P A C+ + + LK + + V + PI D +C+G+QH+AA+ +
Sbjct: 437 ------LKAESPTLFAAFCLTMRK-LKENPDYPVFN--PIFLDATCSGVQHFAAMLLDLE 487
Query: 731 EAAAVNLV-AGEKPADVYSEIAVRVHEIMKRDSNKDPSKHPQALLAKILIDQVDRKLVKQ 789
VNL+ +GE D YS++ +++ + + K K + I ++R L+K+
Sbjct: 488 LGKYVNLINSGESVNDFYSQLIPAINKAINESAEK---KFKNLKFSDI---SLNRSLLKK 541
Query: 790 TVMTSVYGVTFVGAREQIKRRLE--EKGHITDDRQL-------------------FAAAC 828
+MT Y VT G EQ+K +LE EK I+ +++ F
Sbjct: 542 VIMTKSYNVTTYGITEQLKSKLEKVEKIVISKGKEIKVYDYLVPTKNGDFVVLDTFEVET 601
Query: 829 YAAKVTLTALGEIFEAARSIMGWLGDCAKVIASENQPVRWTTPLGLPVVQPYCKNERHLI 888
A+ + + F SI +L AK+ + P+ W+TP GL + Q Y N +
Sbjct: 602 LASIINDNIFNQ-FPKLHSIYDYLTRLAKIYLKLDIPLSWSTPDGLELTQRY--NLSKVK 658
Query: 889 RTSLQVLALQREG------NLVKIRKQRTAFPPNFVHSLDGSHMMM 928
+ ++ L R N R++ A PN +HSLD SH+ M
Sbjct: 659 KLTINFLGKNRTAVLRSWVNEKDSRREVQAIIPNIIHSLDASHLTM 704
>gi|357516855|ref|XP_003628716.1| DNA-directed RNA polymerase [Medicago truncatula]
gi|355522738|gb|AET03192.1| DNA-directed RNA polymerase [Medicago truncatula]
Length = 259
Score = 127 bits (319), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 62/122 (50%), Positives = 83/122 (68%), Gaps = 1/122 (0%)
Query: 177 LLRRRQVKQETEAWERMVDEYKELEAKMIEKRLAPNLPHIKGLFLGWFGPLSEAIEREQK 236
+LRRRQ+K ETEAWE EY+EL M E++LAPNLP++K LFLGWF PL AI +Q+
Sbjct: 138 MLRRRQIKIETEAWEEAAREYQELLEDMREQKLAPNLPYMKSLFLGWFEPLKNAIAADQE 197
Query: 237 MQRTKKQKAAYAPHIELLPADKVAVIVMHKMMGLVMAGHED-RCVQVVQAAVHIGMAIEQ 295
+ + K + ++AP+ LP D +AVI MHK+MGL+M +V+QAA IG AIE
Sbjct: 198 ICKDTKTRLSHAPYFNELPPDMMAVITMHKLMGLLMTNSNGVGSARVIQAACQIGEAIEH 257
Query: 296 EI 297
E+
Sbjct: 258 EV 259
>gi|426387670|ref|XP_004060286.1| PREDICTED: DNA-directed RNA polymerase, mitochondrial-like [Gorilla
gorilla gorilla]
Length = 266
Score = 127 bits (318), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 83/233 (35%), Positives = 120/233 (51%), Gaps = 57/233 (24%)
Query: 716 CNGLQHYAALGRNTLEAAAVNLVAGEKPADVYSEIAVRVHEIMKRDSNKDPSKHPQALLA 775
CNGLQHYAALGR+++ AA+VNL + P DVYS +A +V E+ +R + + ++ +A
Sbjct: 5 CNGLQHYAALGRDSVGAASVNLEPSDVPQDVYSGVAAQV-EVFRRQNAQRRTR-----VA 58
Query: 776 KILIDQVDRKLVKQTVMTSVYGVTFVGAREQIKRRLEEKGHITDDRQLFAAACYAAKVTL 835
++L + RK+VKQTVMT VYGVT G R QI++RL E + D Q F
Sbjct: 59 QVLEGFITRKVVKQTVMTVVYGVTCYGGRLQIEKRLRE---LNDFPQEFVG--------- 106
Query: 836 TALGEIFEAARSIMGWLGDCAKVIASENQPVRWTTPLGLPVVQPYCKNERHLIRTSLQVL 895
+ PLG+P++QPY + E + ++ +
Sbjct: 107 ---------------------------------SPPLGVPIIQPY-RLESKVKQSGGGIQ 132
Query: 896 ALQREGNLVKIR-----KQRTAFPPNFVHSLDGSHMMMTAVACRDAGLHFAGL 943
++ N R KQ+ FPPNF+HSLD SHMM+TA+ C GL F +
Sbjct: 133 SITYTHNRDISRKPNTPKQKNGFPPNFIHSLDSSHMMLTALHCYRKGLIFVSV 185
>gi|327492533|ref|YP_004347431.1| rnapol (mitochondrion) [Moniliophthora roreri]
gi|308912867|gb|ADO51613.1| rnapol (mitochondrion) [Moniliophthora roreri]
Length = 1356
Score = 127 bits (318), Expect = 4e-26, Method: Compositional matrix adjust.
Identities = 142/599 (23%), Positives = 245/599 (40%), Gaps = 99/599 (16%)
Query: 412 TTKRYGVVECDPLVLEGLDRSAKHMLIPY-VPMLVPPKKWK------GYNKGGYLF---- 460
++K+ + C +++ + + I Y +PM+V PKK+K N GGYL
Sbjct: 674 SSKKESIFVCKKEIVDKIGNYFNLLDISYKIPMIVEPKKYKINQNTGQLNLGGYLLNDID 733
Query: 461 LPSYVMRTHGSRKQQEALKSVTGNCMKKVFEALDTLGSTKWRVNKQVLSVLESIWVSGGN 520
S ++ + K Q ++ +++ + + S +++N QVL E I +G
Sbjct: 734 FISPLIINNPELKSQSIIREQNN-----IYDMANNISSVAYKINNQVL---EFILENG-- 783
Query: 521 IAGLVDRNDVLIPEKPLSEDMTEVQKWKWSVRKAKKINQERHSQRCDTELKLSVARRMKD 580
++ N ++ P + ++ + K ++ + K+++ +R + + L +A K+
Sbjct: 784 ----LEYNLIIDPNNKSNLELKKEAGHKLTLSEEKELDSFLSKKRLEKNI-LGLALIFKN 838
Query: 581 EEGFYYPHNLDFRGRAYPMHPHLNHLSSDVCRGVLEFAEGRPLGKS---GLRWLKIHLAN 637
F+ P +D RGR Y M +LN+ S ++ + +L F++G + KS + +LKI AN
Sbjct: 839 IPEFFIPVRIDNRGRVYCMADYLNYQSVELAKSLLLFSKGEKVSKSDQISIDYLKIFGAN 898
Query: 638 LFSGGVEKLSHDGRLAFVENHLYEIFDSAENPINGSRWWLTAEDPFQCLAAC---INLSE 694
F G+EK S++ R+ +V + D N NG AE +A C +N
Sbjct: 899 CFGNGLEKKSYNNRVEWVNKNE----DKIINFRNG-ELISEAESKLLFIAFCFEYLNYKN 953
Query: 695 ALKSSSPHSVISHLPIHQDGSCNGLQHYAALGRNTLEAAAVNLV-----AGEKPADVYSE 749
+LK++ ISH P+ D +CNG QH + L + A +NL+ P D Y+
Sbjct: 954 SLKNNDTF-YISHFPVQLDATCNGFQHLSLLTADEPLAGQLNLIPESRDKDSDPKDFYTY 1012
Query: 750 IAVRVHEIMKRDSNKDPSK----------HPQALLAKIL-----IDQVD--------RKL 786
I ++ + + + SK + + KIL ID +D RKL
Sbjct: 1013 ICFKLKDHLVKKKGDLESKIKKIEISSKLDLEVIEEKILPIKEEIDSIDNLLKLELHRKL 1072
Query: 787 VKQTVMTSVYGVTFVGA----REQIKRRLEEKGHI--------------TDDRQLF---- 824
+K +M Y +F EQ + L + D +F
Sbjct: 1073 IKIPIMVKPYNASFYQMVNYILEQFDKFLVNNEDLNSYNIKFPERLLQKNDKHNIFIYKH 1132
Query: 825 ---AAACYAAKVTLTA-LGEI----FEAARSIMGWLGDCAKVIASENQPVRWTTPLGLPV 876
Y TL + E+ F R +L A++ N + W P GL V
Sbjct: 1133 DKNIILIYKDFYTLVKNIEELIYTEFPKLREFNDYLRRVAEICCQLNLTISWILPTGLNV 1192
Query: 877 VQPYCKNER---HLIRTSLQVLALQREGNLVKIRKQRTAFPPNFVHSLDGSHMMMTAVA 932
Q Y + H R + L + N KQ A PN +HSLD + + + A
Sbjct: 1193 NQNYQDFQAIRLHPFRYKSKTFKLLIKSNKTNKAKQIRALMPNLIHSLDAASLALIVDA 1251
>gi|357624513|gb|EHJ75257.1| hypothetical protein KGM_01416 [Danaus plexippus]
Length = 296
Score = 126 bits (316), Expect = 6e-26, Method: Compositional matrix adjust.
Identities = 74/170 (43%), Positives = 100/170 (58%), Gaps = 13/170 (7%)
Query: 775 AKILIDQVDRKLVKQTVMTSVYGVTFVGAREQIKRRLEEKGHITDDRQLFAAACYAAKVT 834
A +L V RK++KQTVMT+VYGVT GAR QI ++L++ + ++ + Y T
Sbjct: 13 AMVLEGFVRRKVIKQTVMTTVYGVTRFGARLQIAKQLKDIDEFPKE-YVWPCSQYLTART 71
Query: 835 LTALGEIFEAARSIMGWLGDCAKVIASE-NQPVRWTTPLGLPVVQPYCKNERHLIRTSLQ 893
+L E+F + + I W DCAK+I+ + V W TPLGLPV+QPY + R Q
Sbjct: 72 FDSLREMFASTKLIQDWFTDCAKMISGVCGESVEWVTPLGLPVLQPYYR------RPPAQ 125
Query: 894 VLALQREGNLVKIRKQRTAFPPNFVHSLDGSHMMMTAVACRDAGLHFAGL 943
QR + KQR AFPPNF+HSLDGSHMM+TA+ C GL F +
Sbjct: 126 DTQ-QRPCTM----KQRNAFPPNFIHSLDGSHMMLTALRCGARGLTFVSV 170
>gi|21428972|gb|AAM50205.1| GH27547p [Drosophila melanogaster]
Length = 244
Score = 125 bits (314), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 68/159 (42%), Positives = 96/159 (60%), Gaps = 11/159 (6%)
Query: 792 MTSVYGVTFVGAREQIKRRLEEKGHITDDRQLFAAACYAAKVTLTALGEIFEAARSIMGW 851
MT+VYGVT GAR QI R+L++ D ++ A+ Y T +L E+F + R I W
Sbjct: 1 MTTVYGVTRYGARLQIARQLKDIDDFPKD-WVWPASTYLTTKTFESLREMFTSTREIQDW 59
Query: 852 LGDCAKVIASE-NQPVRWTTPLGLPVVQPYCKNE-RHLIRTSLQVLA-----LQREGNLV 904
+CA++I+ +Q V W TPLGLPVVQPY + E +H R+ +V A L N++
Sbjct: 60 FTECARLISGVCSQNVEWVTPLGLPVVQPYNRQEMKHSPRSGFKVSANMPMDLYERPNIL 119
Query: 905 KIRKQRTAFPPNFVHSLDGSHMMMTAVACRDAGLHFAGL 943
K Q+ AFPPNF+HSLD SHMM+T++ C G+ F +
Sbjct: 120 K---QKNAFPPNFIHSLDSSHMMLTSLHCERQGITFVSV 155
>gi|437706625|ref|ZP_20825381.1| DNA-directed RNA polymerase, partial [Salmonella enterica subsp.
enterica serovar Enteritidis str. 543463 42-20]
gi|435291618|gb|ELO68431.1| DNA-directed RNA polymerase, partial [Salmonella enterica subsp.
enterica serovar Enteritidis str. 543463 42-20]
Length = 337
Score = 125 bits (314), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 91/321 (28%), Positives = 162/321 (50%), Gaps = 38/321 (11%)
Query: 440 YVPMLVPPKKWKGYNKGGYLF--LPSYVMRTHGSRKQQEALKSVTGNCMKKVFEALDTLG 497
Y P +VPP+ WK GG+ + S + G+R E ++ +T M KV++A++ L
Sbjct: 19 YAPCVVPPRPWKTPFNGGFHTEKVASRIRLVKGNR---EHVRKLTQKQMPKVYKAINALQ 75
Query: 498 STKWRVNKQVLSVLESI-----WVSGGNIAGLVDRNDVLIPEKPLS-----------EDM 541
+T+W++NK VL+V+E + + L+D+ + P P+ ++M
Sbjct: 76 NTQWQINKDVLAVIEEVVRLDLGYGVPSFKPLIDKENK--PANPVPVEFQHLRGRELKEM 133
Query: 542 TEVQKWK----WSVRKAKKINQE--RHSQRCDTELKLSVARRMKDEEGFYYPHNLDFRGR 595
++W+ W A+ E R S+ + AR+ E Y+ + +D R R
Sbjct: 134 LSPEQWQQFINWKGECARLYTAETKRGSKSAAVVRMVGQARKYSAFESIYFVYAMDSRSR 193
Query: 596 AYPMHPHLNHLSSDVCRGVLEFAEGRPLGK-SGLRWLKIHLANLFSGGVEKLSHDGRLAF 654
Y L+ S+D+ + +L F EGRP+ L+W I+ ANL+ G +K + D R++
Sbjct: 194 VYAQSSTLSPQSNDLGKALLRFTEGRPVDSVEVLKWFCINGANLW--GWDKKTFDVRVSN 251
Query: 655 VENHLYEIF--DSAENPINGSRWWLTAEDPFQCLAACINLSEAL---KSSSPHSVISHLP 709
V + ++ D A +P+ ++W A+ P++ LA C ++ L + +HLP
Sbjct: 252 VLDEEFQDMCRDIAADPLTFTQW-AKADAPYEFLAWCFEYAQYLDLVEEGRADEFRTHLP 310
Query: 710 IHQDGSCNGLQHYAALGRNTL 730
+HQDGSC+G+QHY+A+ R+ +
Sbjct: 311 VHQDGSCSGIQHYSAMLRDEV 331
>gi|2500645|sp|Q01521.1|RPOP_PODAS RecName: Full=Probable DNA-directed RNA polymerase
gi|4585700|emb|CAA43116.2| RNA polymerase [Podospora anserina]
Length = 948
Score = 122 bits (306), Expect = 9e-25, Method: Compositional matrix adjust.
Identities = 159/633 (25%), Positives = 269/633 (42%), Gaps = 92/633 (14%)
Query: 337 IKSKRVMEAQKLLKNEETKPWGRDTQAKLGSRLVELLIETAYVQHPVNPADYSPPDVRPA 396
IK+K E QK K +D KL + + L+ + V A
Sbjct: 252 IKNKLSKEEQKCYYLSNWKKDNKDIVEKLEDNIFQFLLGQKISNLTKDTDLLDMETVTMA 311
Query: 397 FRHRFKTILKHPGQKTTKRYGVVECDPLVLEGLDRSAKHMLIPY-VPMLVPPKKWKGYNK 455
+R K+I+ P +K +L+ L ++P +PM+V PK +
Sbjct: 312 YRE--KSIVWKPTKK-------------ILKVLPEDGTLFVLPKKIPMIVKPKPYTTRVN 356
Query: 456 GGYLFLPSYVMRTHGSRKQQEALKSVTGNC-MKKVFEALDTLGSTKWRVNKQVLSVLESI 514
GGYL Y+ K++ L+ T ++F+ ++ L S +++N VL +E
Sbjct: 357 GGYLSNDLYI--NENIVKEKWNLRDNTQILHFNQIFDLVNNLSSIGYKINTDVLDFIE-- 412
Query: 515 WVSGGNIAGLVDRNDVLIPEKPLSEDMTEVQKWKWSVRKAKKINQERHSQRCDTELK--- 571
+ G + +N+++ P + KK E S EL+
Sbjct: 413 -LYGSDYF----KNELIDPRYS--------HPLLKKSKLTKKEKMELDSFLAKKELQENI 459
Query: 572 LSVARRMKDEEGFYYPHNLDFRGRAYPMHPHLNHLSSDVCRGVLEFAE-GRPLGKS--GL 628
L +A ++ F+ P N DFRGR Y +LN+ S+D+ + +L F++ GR K L
Sbjct: 460 LGLAEIFRNIPEFFIPVNADFRGRVYCTPEYLNYQSTDLAKSLLLFSKPGRMYKKDYIAL 519
Query: 629 RWLKIHLANLFSGGVEKLSHDGRLAFVENHLYEIFDSAENPINGSRWWLTAEDPFQCLAA 688
+LKI+ + F G++KLS + R+ +V+ +L ++ +N NG + A++ F LA
Sbjct: 520 SYLKIYGGSSF--GLDKLSANDRIKWVDKNL----NNIKNYRNG-KLIKEAKNKFLFLAF 572
Query: 689 CINLSEALKSSSPHSVI---SHLPIHQDGSCNGLQHYAALGRNTLEAAAVNLVAG---EK 742
CI + L H V ++LPI D +CNG QH + L ++ + +NL +
Sbjct: 573 CIEYNRYLNCLDNHDVSWFDTYLPIQMDATCNGFQHLSLLSLDSNLSKELNLSESTWDDV 632
Query: 743 PADVYSEIAVRVHEIMKRD--SNKDPSKHPQALLAKILIDQVDRKLVKQTVMTSVYGVTF 800
P D Y+ + V + +K + NK+ + +++ ++ R+++K+ +MT Y V+
Sbjct: 633 PKDFYTFLVVCFIDYLKTELLENKNLTPKESESYNRLINMKIIREIIKKGIMTIPYNVSN 692
Query: 801 VGAREQIKRRLEEKGHITDDRQLFAAACYAAK---------VTLTALG--------EIFE 843
I+ E +D L Y K + T LG E F
Sbjct: 693 FSLINYIREGFE-----LEDNSL---EWYIYKNEPSIRLKSLDFTVLGKGLRKVLHEKFH 744
Query: 844 AARSIMGWLGDCAKVIASENQPVRWTTPLGLPVVQPYCKNERHLI--------RTSLQVL 895
++ +L A+V P+ WT P GL V Q Y + I + S++VL
Sbjct: 745 KLDLLLKYLDQVARVCTLLEIPIIWTLPTGLVVRQSYMIRDEVRIKPFNHSNKKFSMKVL 804
Query: 896 ALQREGNLVKIRKQRTAFPPNFVHSLDGSHMMM 928
+ N KQ TAF PN VHSLD + + +
Sbjct: 805 NKTQFNN----SKQITAFMPNLVHSLDAASLTL 833
>gi|395132392|dbj|BAM29339.1| rnapol (mitochondrion) [Lentinula edodes]
Length = 1248
Score = 121 bits (304), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 139/575 (24%), Positives = 236/575 (41%), Gaps = 128/575 (22%)
Query: 422 DPLVLE----GLDRSAKHMLIP--YVPMLVPPKKWKGYNKGGYLFLPSYVMRTHGSRKQQ 475
DP +LE L+ K+++I +PML P W + GG+L G+
Sbjct: 626 DPFLLELNKEYLEDIKKNLIIDPKTLPMLCKPLDWTENSYGGFL-----SNEIRGNDIIT 680
Query: 476 EALKSVTGNCMKKVFEALDTLGSTKWRVNKQVLSVLESIWVSGGNIAGLVDRNDVLIPEK 535
+ + N + +F ++ S K+ VN ++L L S G I + + PE
Sbjct: 681 GSNDHIVQN-RESLFNTVNNFNSIKFGVNTKLLKYLLS--SEGSYIL------ESIKPED 731
Query: 536 PLSEDMTEVQKWKWSVRKAKKINQERHSQRCDTELKLSVARRMKDEEGFYYPHNLDFRGR 595
L +T LK+ + FY D+RGR
Sbjct: 732 ELQRALT---------------------------LKIG---ELYSNTFFYLNTQTDWRGR 761
Query: 596 AYPMHPHLNHLSSDVCRGVLEFAEGRPLGKSGLRWLKIHLANLFS-GGVEKLSHDGRLAF 654
Y +L++ + D+ +L F EG+P+ G +L I+ AN + + K S+ RL +
Sbjct: 762 IYVQSFYLSYQAGDLSTALLNFWEGQPINDEGRFYLYIYGANSHNENNISKASYTDRLKW 821
Query: 655 VENHLYEIFDSAENPINGSRWWLTAEDPFQCLAACINLSEALKSSSPHSVISHLPIHQDG 714
V+N+ +I + N I L+AE+PF A C+NL E +P+++IS P+ D
Sbjct: 822 VKNNYNKIINLDRNLI------LSAENPFIFTAFCLNLREI--HYNPNAIIS-TPVFLDA 872
Query: 715 SCNGLQHYAALGRNTLEAAAVNLVAG---EKPADVYSEIAVRVHEIMKRDSNKDPSKHPQ 771
+C+G+QH AAL R+ + NL+ EKP D+Y + ++ R NK ++ Q
Sbjct: 873 TCSGIQHLAALLRDLDLGSNTNLIPSTKDEKPGDIYDTMLGYIN----RAINKLGEENIQ 928
Query: 772 ALLAKILIDQVDRKLVKQTVMTSVYGVTFVGAREQIK----------------------- 808
+ + ++ RK +K +VMT VY V+ G +Q++
Sbjct: 929 YGIFTYI--KLVRKEIKPSVMTKVYNVSKYGISQQLQTIFKKIYVKDLDNHSSTNISVAE 986
Query: 809 ----------------RRLEEKGHITDDRQLFAAACYAAKVTLTALGEIFEAA------- 845
LE+ ++ LF K + E+F+ A
Sbjct: 987 AENKFYDKDKPFEDIPEVLEKSLKSNKNKTLFICTGLDGKKVYLSRSEVFKIASIIDEQI 1046
Query: 846 -------RSIMGWLGDCAKVIASENQPVRWTTPLGLPVVQPYCKNERHLIRTSL-----Q 893
+I + + K+ + + P+ W TP GL + Q Y K ++ ++ SL +
Sbjct: 1047 FVAFPSLNNIYNYFIETTKLSSMLDLPIIWITPSGLKLTQNYIKQKKKVVSVSLFGHTKK 1106
Query: 894 VLALQREG-NLVKIRKQRTAFPPNFVHSLDGSHMM 927
++ G + KQ A PN +HSLD SH++
Sbjct: 1107 MMYRDTTGEKKIDNSKQAQAIIPNIIHSLDASHLV 1141
>gi|169646973|ref|YP_001718359.1| RNA polymerase [Fusarium proliferatum]
gi|149131940|gb|ABR20838.1| RNA polymerase [Fusarium proliferatum]
Length = 1062
Score = 120 bits (302), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 127/527 (24%), Positives = 218/527 (41%), Gaps = 72/527 (13%)
Query: 441 VPMLVPPKKWKGYNKGGYL----------FLPSYVMRTHGSRKQQEALKSVTGNCMKKVF 490
+PM+V PK++ GGYL F + + L S+ N MK
Sbjct: 447 LPMIVKPKEYTITKLGGYLLNDVEYSEPLFTSKIAYKKSSEVDPKGELYSIINNMMK--- 503
Query: 491 EALDTLGSTKWRVNKQVLSVLESIWVSGGNIAGLVDRNDVLIPEKPLSEDMTEVQKWKWS 550
T +++NK++L L V D++ ++I S E K K
Sbjct: 504 --------TPFKINKELLDYL----VLNN------DKHKLIID----SNKEHEYSKIKNR 541
Query: 551 VRKAKKINQERHSQRCDTELKLSVARRMKDEEGFYYPHNLDFRGRAYPMHPHLNHLSSDV 610
+ ++ Q+ S++ + L +A KD Y+P LD RGR YP +LN+ S++
Sbjct: 542 TKIEERKFQQFMSEKMLEQYILKIANTFKDVPEIYFPIMLDNRGRLYPRPAYLNYQGSEL 601
Query: 611 CRGVLEFAEGRPLGK---SGLRWLKIHLANLFSGGVEKLSHDGRLAFVENHLYEIFDSAE 667
+ +L FA + + S + +L + + G+EK S++ R+ +V+ + I D
Sbjct: 602 AKSLLLFANPDIINRDDHSSIEYLLAYGGTCYGNGLEKKSYEARIEWVKENWDTILD--- 658
Query: 668 NPINGSRWWLTAEDPFQCLAACINLSEALK--SSSPHSVISHLPIHQDGSCNGLQHYAAL 725
S A++ F LA C + K +SS ++LPI DG+CNG QH A +
Sbjct: 659 --FENSDLLEKADEKFLFLAFCFEIRRFNKFLASSDFEFKTYLPIQLDGTCNGFQHLALM 716
Query: 726 GRNTLEAAAVNLVAGEK---PADVYSEIAVRVHEIMKRDSNKDPSKHPQALLAKILIDQV 782
++NL K P D YS I + ++ ++ + +++L +
Sbjct: 717 SHELTLFDSLNLSKSSKADNPKDFYSHILTLLEGYLQEKYKNSRNEEERESFSRLLKLGL 776
Query: 783 DRKLVKQTVMTSVYGVTFVGAREQIKRRL-EEKGHITDDRQLFAAACYAA---------- 831
+R VK+ +MT Y T +K L +K + + Y
Sbjct: 777 NRSNVKKIIMTKPYNSTDTTLSSYLKSSLILDKTETSKEDPSIKLNWYKVSKDSEVSVNH 836
Query: 832 ---KVTLTALGEI----FEAARSIMGWLGDCAKVIASENQPVRWTTPLGLPVVQPYCKNE 884
++ + + E+ + +++ +L A + N P+ W P GL V Q Y K
Sbjct: 837 KDIRLMVETINEMLFVRYPRIKALNEYLNKIAILHNKLNIPIVWYLPTGLIVNQQYMKQH 896
Query: 885 RHLIR---TSLQVLALQREGNLVKIRKQRT--AFPPNFVHSLDGSHM 926
+ ++ +S + L L VKI KQ+ A PN VHSLD + +
Sbjct: 897 KKRVKPTWSSTKYLTLTITDK-VKIDKQKQVRALMPNLVHSLDATTL 942
>gi|116072263|ref|ZP_01469530.1| DNA-directed RNA polymerase [Synechococcus sp. BL107]
gi|116064785|gb|EAU70544.1| DNA-directed RNA polymerase [Synechococcus sp. BL107]
Length = 809
Score = 120 bits (301), Expect = 4e-24, Method: Compositional matrix adjust.
Identities = 121/456 (26%), Positives = 194/456 (42%), Gaps = 51/456 (11%)
Query: 493 LDTLGSTKWRVNKQVLSVLESIWVSGGNIAGLVD--RNDVL---IPEKPLSEDMTEVQKW 547
L+TLG T ++V+ V V++ W + +IAG N L +P+ + D +
Sbjct: 297 LNTLGRTAFQVDPLVFEVIDDCWETQRSIAGFNSPFENPELNQEMPDHLKALDKKHPDRV 356
Query: 548 KWSVRKAKKINQER-HSQRCDT-ELKLSVARRMKDEEGFYYPHNLDFRGRAYPMHPHLNH 605
W R+A +QE+ H ++ + + L AR+ + + F+ + DFRGR Y L+
Sbjct: 357 AWRKRQAYLHDQEQEHIEKTQSAQAVLISARKNETRQRFWLSWSCDFRGRIYSQQSWLDP 416
Query: 606 LSSDVCRGVLEFAEGRPLGKSGLRWLKIHLANLFSGGVEKLSHDGRLAFVENHLYEIFDS 665
S D R VL FA+G L + G W + F G K S+ R + + I
Sbjct: 417 QSRDFERSVLRFADGCRLDEQGKEWAARAVGAAFGG--TKQSYAARSQWTYENTELIAAI 474
Query: 666 AENPINGSRWWLTAEDPFQCLAACINLSE-ALKSSSPHSVISHLPIHQDGSCNGLQHYAA 724
A +PI S W A++P+Q L + + L+ + P + +P+ D + +GLQ +A
Sbjct: 475 ASDPIRHSSQWENADEPWQFLQMAMEWNAVVLQQTKP---LWQVPVSVDSTASGLQLLSA 531
Query: 725 LGRNTLEAAAVNLVAGEKPA----DVYSEIAVRVHEIMKRDSNKDPSKHPQAL-LAKILI 779
+ R+ + NL+ E P D Y E+ EI + D PQ + LAK L
Sbjct: 532 MRRDPVGMKWTNLIPSEDPDQPPRDAYLEVLRVAREIAEAD--------PQTVWLAKHL- 582
Query: 780 DQVDRKLVKQTVMTSVYGVTFVGAREQIKRRLEEKGHITDDRQLFAAACYAAKVTLTALG 839
DR L K +M ++YG ++ R I L + G D + + A
Sbjct: 583 --TDRSLGKPVLMIAIYGGSYRTNRGDIVDALRKLGSYP-DMVSWDDTKVMTDILQKASK 639
Query: 840 EIFEAARSIMGWLGD-CAKVIASENQPVRWTTPLGLPVVQPYCKNERHLIRTSLQVLALQ 898
++F AA + WL C K I + + W TP C ++ H + + +
Sbjct: 640 QVFPAAFETLDWLRQLCTKAIENGATSLWWETP---------CSDQIHQSEYEVDSIEVD 690
Query: 899 REG-----------NLVKIRKQRTAFPPNFVHSLDG 923
G N +K ++ F PNFVHS D
Sbjct: 691 TYGHGRMRIAVGSVNEPNEKKLKSGFAPNFVHSYDA 726
>gi|327492538|ref|YP_004347441.1| rnapol (mitochondrion) [Moniliophthora roreri]
gi|308912878|gb|ADO51622.1| rnapol (mitochondrion) [Moniliophthora roreri]
Length = 1107
Score = 118 bits (296), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 122/533 (22%), Positives = 223/533 (41%), Gaps = 105/533 (19%)
Query: 442 PMLVPPKKWKGYNKGGYLFLPSYVMRTHGSRKQQEALKSVTGNCMKKVFEALDTLGSTKW 501
PM+V PK W GG+L S + +++ + + + + +++ ++ L S K+
Sbjct: 525 PMIVQPKIWTEDTYGGFLSNDSRELDIITGKEEHDHI--IENKSL--IYQTVNYLNSIKF 580
Query: 502 RVNKQVLSVLESIWVSGGNIAGLVDRNDVLIPEKPLSEDMTEVQKWKWSVRKAKKINQER 561
VN +L + S G I D + P+ L +T
Sbjct: 581 GVNNMLLEYITS--EEGKYIL------DHIKPDNDLQRTIT------------------- 613
Query: 562 HSQRCDTELKLSVARRMKDEEGFYYPHNLDFRGRAYPMHPHLNHLSSDVCRGVLEFAEGR 621
L VA+ + FY + D+RGR Y L++ S D+ +L F EG
Sbjct: 614 ----------LEVAK-LYSNIPFYLNTHADWRGRIYTQSFFLSYQSGDLSLSLLNFWEGE 662
Query: 622 PLGKSGLRWLKIHLANLFS-GGVEKLSHDGRLAFVENHLYEIFDSAENPINGSR-WWLTA 679
+ + G +L I+ AN + K S R+ +V ++ + IN R L+A
Sbjct: 663 KVNEEGKFYLYIYGANSHDQNKISKASFKDRIDWVN-------ENYDKIINLDRELILSA 715
Query: 680 EDPFQCLAACINLSEALKSSSPHSVISHLPIHQDGSCNGLQHYAALGRNTLEAAAVNLVA 739
E PF A C+N+ E ++P+ +I P+ D +C+G+QH AAL ++ NL+
Sbjct: 716 ESPFIFTAFCLNMREI--HNNPNVLIK-TPVFLDATCSGIQHLAALMKDLELGTNTNLIE 772
Query: 740 G---EKPADVYSEIAVRVHEIMKRDSNKDPSKHPQALLAKILIDQVDRKLVKQTVMTSVY 796
EKP D+Y + +++ + + ++ A+L+ + ++ RK VK +MT VY
Sbjct: 773 STIEEKPGDIYETLLEPINKAINKFGEENIE---YAMLSLV---KLTRKEVKAPIMTKVY 826
Query: 797 GVTFVGAREQIKR--RLEEKGHITDDR--------------------------------- 821
VT G Q++ ++++ + D+
Sbjct: 827 NVTKYGISNQLQSIFKIKDDENFIDEFYNKPMNEIHKEFLDSFKSNKSKTKFICKGKDGK 886
Query: 822 --QLFAAACY-AAKVTLTALGEIFEAARSIMGWLGDCAKVIASENQPVRWTTPLGLPVVQ 878
+L + Y A + + +F + I + + AK+ P+ W TP GL + Q
Sbjct: 887 YIRLSSKEIYKIASIINEQIFVVFPSLNEIYNYFIELAKLAVKLELPMTWITPSGLKITQ 946
Query: 879 PYCKNERHLIRTSL----QVLALQREGNLVKIRKQRTAFPPNFVHSLDGSHMM 927
Y K ++ +I S+ + + ++ + + KQ + PN +HSLD +H+M
Sbjct: 947 NYFKQKKKVISISIFGKTKKIVIKENTDKIDKGKQIQSIIPNIIHSLDATHLM 999
>gi|13959456|sp|O03685.1|RPOP_GELSP RecName: Full=Probable DNA-directed RNA polymerase
gi|1805213|gb|AAB41448.1| ORF1 [Gelasinospora sp. G114]
Length = 831
Score = 116 bits (290), Expect = 7e-23, Method: Compositional matrix adjust.
Identities = 100/375 (26%), Positives = 170/375 (45%), Gaps = 48/375 (12%)
Query: 584 FYYPHNLDFRGRAYPMHPHLNHLSSDVCRGVLEFAEGRPLGKSGLRWLKIHLANLFS--G 641
FY N+D+RGR Y +L + S++ ++ EG+ L + GL + ++ AN+++ G
Sbjct: 368 FYLNVNIDWRGRIYTQSFYLGYQGSELSLALINLFEGQKLDEEGLFFFYVYGANIYNEGG 427
Query: 642 GVEKLSHDGRLAFVENHLYEIFDSAENPINGSRWWLTAEDPFQCLAACINLSEALKSSSP 701
K S R +V +L I ++ I L AE P A C+ + + LK +
Sbjct: 428 KFSKKSFQDRFNWVVENLDNIIAMDKDFI------LKAESPTLFAAFCLTMRK-LKENPD 480
Query: 702 HSVISHLPIHQDGSCNGLQHYAALGRNTLEAAAVNLV-AGEKPADVYSEIAVRVHEIMKR 760
H V + PI D +C+G+QH+AA+ + VNL+ +GE D YS++ +++ +
Sbjct: 481 HPVFN--PIFLDATCSGVQHFAAMLLDLELGKYVNLINSGESVNDFYSQLIPAINKAINE 538
Query: 761 DSNKDPSKHPQALLAKILIDQVDRKLVKQTVMTSVYGVTFVGAREQIKRRLE--EKGHIT 818
+ K K + I ++R L+K+ +MT Y VT G EQ+K +LE EK I+
Sbjct: 539 SAEK---KLKNVKFSDI---SLNRSLLKKVIMTKSYNVTTYGITEQLKSKLEKVEKIIIS 592
Query: 819 DDRQL-------------------FAAACYAAKVTLTALGEIFEAARSIMGWLGDCAKVI 859
+++ F A+ + + F SI +L K+
Sbjct: 593 KGKEIKVYDYLVPTKNGKFVVLDTFEVETLASIINDNIFNQ-FPKLHSIYEYLTRLTKIY 651
Query: 860 ASENQPVRWTTPLGLPVVQPYCKNERHLIRTSLQVLALQREGNL------VKIRKQRTAF 913
+ P+ +TP GL + Q Y N + + ++ L R L R++ A
Sbjct: 652 LKLDIPISCSTPDGLELTQRY--NLSKVQKLTINFLGKNRTAVLRSWVSDKDSRREVPAI 709
Query: 914 PPNFVHSLDGSHMMM 928
PN +HSLD +H+ M
Sbjct: 710 IPNIIHSLDAAHLPM 724
>gi|207345730|gb|EDZ72453.1| YFL036Wp-like protein [Saccharomyces cerevisiae AWRI1631]
Length = 671
Score = 114 bits (284), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 105/395 (26%), Positives = 174/395 (44%), Gaps = 44/395 (11%)
Query: 177 LLRRRQVKQETEAWERMVDEYKELEAKMIEKRLAPNL--------PHIKGLFLGWFGPLS 228
+L R + E W+ +E K IEK L L P +K LS
Sbjct: 297 VLENRATEAARERWKHDFEEAKARGDISIEKNLNVKLWKWYNEMLPLVKEEINHCRSLLS 356
Query: 229 EAIEREQKMQRTKKQKAAYAPHIELLPADKVAVIVMHKMMGLVMAGHEDRCVQVVQAAVH 288
E + ++ + + + Y P++ L+ K+ VI + +++ L G ++ +A +
Sbjct: 357 EKLSDKKSLNKVDTNRLGYGPYLTLIDPGKMCVITILELLKLNSTGGVIEGMRTARAVIS 416
Query: 289 IGMAIEQEIRIHSFLEKTKNYKRKKIIADTEEVLSKEKEL--LRKRVNSLIKSKRVMEAQ 346
+G AIE E R L+ R +V K E L + S+ +S ++ E
Sbjct: 417 VGKAIEMEFRSEQVLKSESQAFR--------DVNKKSPEFKKLVQNAKSVFRSSQI-EQS 467
Query: 347 KLLKNEETKPWGRDTQAKLGSRLVELLIETAYVQ----HPVNPADYSPPDVRPAFRHRFK 402
K+L W + +A++GS L+ +LI+ A V PV A PAF H ++
Sbjct: 468 KIL-------WPQSIRARIGSVLISMLIQVAKVSVQGVDPVTKAKVHGE--APAFAHGYQ 518
Query: 403 TILKHPGQKTTKRYGVVECDPLVLEGLD--RSAKHMLIPYVPMLVPPKKWKGYNKGGYLF 460
H G K GV++ ++ L+ R + +PMLV PK W + GGY +
Sbjct: 519 Y---HNGSK----LGVLKIHKTLIRQLNGERLIASVQPQLLPMLVEPKPWVNWRSGGYHY 571
Query: 461 LPSYVMRTHGSRKQQEALKSVTGNC-MKKVFEALDTLGSTKWRVNKQVLSVLESIWVSGG 519
S ++RT S +Q LK+ + N + +V++ L+ LG T W VN++V V+ +W G
Sbjct: 572 TQSTLLRTKDSPEQVAYLKAASDNGDIDRVYDGLNVLGRTPWTVNRKVFDVVSQVWNKGE 631
Query: 520 NIAGLVDRND--VLIPEKPLSEDMTEVQKWKWSVR 552
+ D VL P P + D T ++ WK V+
Sbjct: 632 GFLDIPGAQDEMVLPPAPPKNSDPTILRAWKLQVK 666
>gi|224110560|ref|XP_002333067.1| predicted protein [Populus trichocarpa]
gi|222838328|gb|EEE76693.1| predicted protein [Populus trichocarpa]
Length = 82
Score = 112 bits (281), Expect = 9e-22, Method: Compositional matrix adjust.
Identities = 50/82 (60%), Positives = 68/82 (82%), Gaps = 2/82 (2%)
Query: 433 AKHMLIPYVPMLVPPKKWKGYNKGGYLFLPSYVMRTHGSRKQQEALKSVTGNCMKKVFEA 492
A+HM+IPY+PMLVPP +W+GY+KG +LFLPSYVMR HG+++Q+EA+K ++ VFE
Sbjct: 3 ARHMVIPYMPMLVPPLRWRGYDKGAHLFLPSYVMRIHGAKQQREAVKRTPRKQLQAVFE- 61
Query: 493 LDTLGSTKWRVNKQVLSVLESI 514
DTLG+TKW VNK+VLSV++ I
Sbjct: 62 -DTLGNTKWSVNKRVLSVVDRI 82
>gi|194380978|dbj|BAG64057.1| unnamed protein product [Homo sapiens]
Length = 927
Score = 112 bits (279), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 98/399 (24%), Positives = 177/399 (44%), Gaps = 33/399 (8%)
Query: 249 PHIELLPADKVAVIVMHKMMGLVMAGHEDRCVQVVQAAVHIGMAIEQEIRIHSFLEKTKN 308
P + LL +V +++ + L G + +A + Q R+ ++ +N
Sbjct: 469 PFLCLLDEREVVRMLLQVLQALPAQGESFTTLARELSARTFSRHVVQRQRVSGQVQALQN 528
Query: 309 YKRKKIIADTEEVLSKEKELLRKRVNSLIKSKRVMEAQKLLKNEETKPWGRDTQAKLGSR 368
+ RK + + E L R+ +L + + E +PW Q +LG
Sbjct: 529 HYRKYLCLLASDAEVPEPCLPRQYWEALGAPEALRE----------QPWPLPVQMELGKL 578
Query: 369 LVELLIETAYVQHPVNPADYSPPDVRPAFRHRFKTILKHPGQ-KTTKRYGVVECDPLVLE 427
L E+L++ + ++ +P R +L H + ++ G+++ P ++
Sbjct: 579 LAEMLVQATQMPCSLD---------KPHRSSRLAPVLYHVYSFRNVQQIGILKPHPAYVQ 629
Query: 428 GLDRSAKHMLI---PYVPMLVPPKKWKGYNKGGYLFLPSYVMRT-HGSRKQQEALKSVTG 483
L+++A+ L VPML PP W + G +L P+ +MRT G+ + QE L++
Sbjct: 630 LLEKAAEPTLTFEAVDVPMLCPPLPWTSPHSGAFLLSPTKLMRTVEGATQHQELLETCPP 689
Query: 484 NCMKKVFEALDTLGSTKWRVNKQVLSVLESIWVSGGNIAGLVDRNDVLIPEKP---LSED 540
+ +AL LG+ WRVN +VL ++ ++ + G V P+ P L
Sbjct: 690 TALHGALDALTQLGNCAWRVNGRVLDLVLQLFQAKGCPQLGVPAPPSEAPQPPEAHLPHS 749
Query: 541 MTEVQK--WKWSVRKAKKINQERHSQRCDTELKLSVARRMKDEEGFYYPHNLDFRGRAYP 598
+K + + +K+ +E HS R + +LS+A+ ++D F+ PHN+DFRGR YP
Sbjct: 750 AAPARKAELRRELAHCQKVAREMHSLRAEALYRLSLAQHLRDRV-FWLPHNMDFRGRTYP 808
Query: 599 MHPHLNHL--SSDVCRGVLEFAEGRPLG-KSGLRWLKIH 634
PH H SS + L PL + GL ++ +H
Sbjct: 809 CPPHFIHSLDSSHMMLTALHCYRSPPLCHRKGLTFVSVH 847
Score = 42.0 bits (97), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 21/36 (58%), Positives = 26/36 (72%), Gaps = 2/36 (5%)
Query: 914 PPNFVHSLDGSHMMMTAVAC-RDAGL-HFAGLSFQS 947
PP+F+HSLD SHMM+TA+ C R L H GL+F S
Sbjct: 810 PPHFIHSLDSSHMMLTALHCYRSPPLCHRKGLTFVS 845
>gi|345870379|ref|ZP_08822332.1| DNA-directed RNA polymerase bacteriophage type [Thiorhodococcus
drewsii AZ1]
gi|343921951|gb|EGV32660.1| DNA-directed RNA polymerase bacteriophage type [Thiorhodococcus
drewsii AZ1]
Length = 1072
Score = 111 bits (278), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 118/414 (28%), Positives = 185/414 (44%), Gaps = 64/414 (15%)
Query: 486 MKKVFEALDTLGSTKWRVNKQVLSVLESIWVSGGNIAGLVDRNDVLIPEKPLSEDMTEVQ 545
++ A++ + WR+N+ +L + + IA L+ P ++D ++
Sbjct: 321 FQRYVAAINVQQAVHWRINRPLLQWTQQL------IA--------LVNAPPANDDDASLR 366
Query: 546 KW-KWSVRKAKKINQ-----ERHSQRCDTEL------KLSVARRMKDEEGFYYPHNLDFR 593
W K + + + N ER ++ D L +L + + D FY P D+R
Sbjct: 367 DWIKDHLYRPRPANGTRKTFERPAEFLDNPLASRALDELCPSDPLVDPPTFYLPWKADYR 426
Query: 594 GRAYPMHPHLNHLSSDVCRGVLEFAEGRPLGKSGLRWLKIHLANLFS----------GGV 643
GR YP L D+ RG+LEFA G+ L +SG+ L+ H ANL
Sbjct: 427 GRIYPQTSWLTPQGGDLQRGLLEFARGQVLNESGVHALRRHGANLVERSRLLTDLGISDR 486
Query: 644 EKLSHDGRLAFVENHLYEIFDSAENPINGSRWWLTAEDPFQCLAACINLSEALKSSSPHS 703
+ ++ + R + +H I SA +P+ W A+ P Q LA C+ + P +
Sbjct: 487 QVVTLNERERWTRDHEAAILASAADPLAEPFWRDVADKPMQFLAFCLAYRQ--WKQHPDA 544
Query: 704 VISHLPIHQDGSCNGLQHYAALGRNTLEAAAVNLV--AGEKPADVYSEIA-VRVHEIMKR 760
I HLP+ DG+CNG+QH AAL N A AVN++ A + PAD+YSE+A + +
Sbjct: 545 RI-HLPVQIDGTCNGIQHIAALTGNRELAEAVNVLPRANDLPADIYSELAEAALKTLGHL 603
Query: 761 DSNKDPSKHPQALL---AKILIDQ-----VDRKLVKQTVMTSVYGV---TFVGA-REQIK 808
K ++H L A + D ++RK K+ VMT YG GA E I+
Sbjct: 604 PIPKGQARHRHGLEWGDAWLATDAAPGAWLNRKTAKRVVMTIPYGAGRSAQAGAVLEAIE 663
Query: 809 RRLEEKGHITDDRQLFAAACYAAKVTLTALGEIFEAARSIMGWLGDCAKVIASE 862
+RL E + D+R + LTAL E AA + ++ C K + E
Sbjct: 664 KRLIE---VWDERP-------PDESKLTALVEWTNAASARKDFVRKCTKGLFVE 707
Score = 52.8 bits (125), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 31/86 (36%), Positives = 45/86 (52%), Gaps = 12/86 (13%)
Query: 865 PVRWTTPLGLPVVQPYCKNERHLIRTSLQV--------LALQREGNLVKIRKQRTAFPPN 916
P+ W TPLG PVVQ N+ RTS+ + ++R V +KQR A PN
Sbjct: 839 PLIWLTPLGFPVVQ----NKFASARTSVSARIGGQAVKIDVRRLTEEVDPQKQRAALLPN 894
Query: 917 FVHSLDGSHMMMTAVACRDAGLHFAG 942
+HSLD +H+M+T + + +H G
Sbjct: 895 LIHSLDATHLMLTLLEAKAREVHDIG 920
>gi|32455893|ref|NP_862205.1| rna polymerase [Blumeria graminis f. sp. hordei]
gi|28300411|gb|AAO37818.1| RNA polymerase [Blumeria graminis f. sp. hordei]
Length = 973
Score = 111 bits (277), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 136/550 (24%), Positives = 238/550 (43%), Gaps = 81/550 (14%)
Query: 429 LDRSAKHMLIPY-VPMLVPPKKWKGYNKGGYLFLPSYVMRTHGSRKQQEALKS-VTGNCM 486
L+ K + IP +PM+V PK + GGYL ++K A+ S + N +
Sbjct: 347 LNVKNKALSIPLNLPMIVKPKPYSENKLGGYLLNDVEYDEGIFTKKIGYAIPSTIQENSI 406
Query: 487 KKVFEALDTLGSTKWRVNKQVLSVLESIWVSGGNIAGLVDRNDVLIPEKPLSEDMTEVQK 546
V+ ++ + T ++VNK++L+ L + +I L+ D K L+ + Q+
Sbjct: 407 --VYFVVNKMMETSFKVNKELLNYL----LRYNHIHKLLIDPD--FEHKLLNVKRNKAQE 458
Query: 547 WKWSVRKAKKINQERHSQRCDTELKLSVARRMKDEEGFYYPHNLDFRGRAYPMHPHLNHL 606
++ Q+ S++ E + +A+ + ++P LD RGR YP ++
Sbjct: 459 KEY---------QQFLSKKLLEEYIIKIAQTYSNVPEIFFPIKLDNRGRLYPKTAFFHYQ 509
Query: 607 SSDVCRGVLEFAEGRPLGKS---GLRWLKIHLANLFSGGVEKLSHDGRLAFVENHLYEIF 663
S++ + ++ FA + +S + +LK + A F G+ + S+ RL +V+N+ +I
Sbjct: 510 GSELAKALILFARPDLIKRSDKEAIEYLKAYGATCFGNGLNRKSYTKRLDWVDNNWDQII 569
Query: 664 DSAENPINGSRWWLTAEDPFQCLAACINL---SEALKSSSPHSVISHLPIHQDGSCNGLQ 720
D + + AE+ F L+ CI + + L + H ++LPI DG+CNG Q
Sbjct: 570 DFENSGLVDE-----AEEKFLFLSFCIEMKRFNNFLSNEYIHEFKTYLPIQLDGTCNGFQ 624
Query: 721 HYAALGRNTLEAAAVNLVAGEK---PADVYSEIAVRVH-EIMKRDSNKDPSKHPQALLAK 776
H A L T +NL+ +K P D Y I +++ + KR P + Q+ +
Sbjct: 625 HLALLSNETKLFETLNLLDAKKSDDPKDFYEHIVNQINIHLEKRRVLIFPDEQKQS-YTR 683
Query: 777 ILIDQVDRKLVKQTVMTSVYG-------------VTFVGAREQ-----------IKRRLE 812
+L + R VK +MT Y +T RE+ IK
Sbjct: 684 LLRLGLSRSNVKPVIMTKPYNAKDKTLVKYILDTLTLSHTREKLVINEFGKEVAIKISWF 743
Query: 813 EKGHITDDRQLFAAACYAAKVTLTALGEI----FEAARSIMGWLGDCAKVIASENQPVRW 868
+ + D Q+ + ++ + + +I + +++ +L K++ PV W
Sbjct: 744 KLNNGLDPEQVVNYS--DIELLVNCINDIIYVNYPNIKTLSLYLNKITKILNKLCLPVVW 801
Query: 869 TTPLGLPVVQPYCKNERHLIR--------TSLQVLALQREGNLVKIR--KQRTAFPPNFV 918
P GL V Q Y RH+ R TSL + + VK+ KQ TA PN V
Sbjct: 802 RLPHGLMVSQKYM--VRHITRVKPFSYLSTSLSLTITDK----VKMDKPKQITALMPNLV 855
Query: 919 HSLDGSHMMM 928
HSLD S + +
Sbjct: 856 HSLDASTLAL 865
>gi|2735635|gb|AAC05224.1| T3/T7-like RNA polymerase [Rhizophydium sp. 136]
Length = 155
Score = 110 bits (276), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 63/160 (39%), Positives = 89/160 (55%), Gaps = 18/160 (11%)
Query: 794 SVYGVTFVGAREQIKRRLEEKGHITDDRQLFAAACYAAKVTLTALGEIFEAARSIMGWLG 853
+ YGVTFVGAR+QI RL+E A Y + ++ ++FE AR+I WL
Sbjct: 1 NTYGVTFVGARDQIFNRLKEARA--------KCALYITRKVFESMSDMFEGARAIQNWLS 52
Query: 854 DCAKVIA----SENQP----VRWTTPLGLPVVQPYCKNERHLIRTSLQVLAL--QREGNL 903
A S+ P + WT+PLG P+VQPY K ++T +Q ++ ++ +
Sbjct: 53 KGANFRMQRRNSKAPPKMTSMIWTSPLGFPIVQPYRKLGFDHVKTFMQTFSIIDDKKPSP 112
Query: 904 VKIRKQRTAFPPNFVHSLDGSHMMMTAVACRDAGLHFAGL 943
V KQ +AFPPNFVHSLD SHMM+TA+AC + FA +
Sbjct: 113 VNSMKQASAFPPNFVHSLDASHMMLTAMACLAQNVTFAAV 152
>gi|357620935|gb|EHJ72947.1| hypothetical protein KGM_20967 [Danaus plexippus]
Length = 1027
Score = 107 bits (267), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 121/461 (26%), Positives = 190/461 (41%), Gaps = 87/461 (18%)
Query: 223 WFGPLSEAIEREQKMQRTKKQKAAYAP-----HIELLPADKVAVIVMHKMMGLVMAGHED 277
W L EA+ R R + A++AP ++++L D+ ++M++++ LV G E
Sbjct: 582 WRSSLREALIRHLATLRAR-SGASHAPVTLYPYLKVLEVDEFVELMMNEIIKLV-DGSES 639
Query: 278 RCVQVVQAAVHIGMAIEQEIRIHSFLEKTKNYKRKKIIADTEEVLSKEKE--LLRKRVNS 335
+ +G + Q+ +I + Y+R ++ E+V K + L R ++
Sbjct: 640 YSPTLKLLQRDLGTQVYQKYQI-------EQYRRNGVLKKIEQVYDKYCKWYLERHSLDG 692
Query: 336 LIKSKRVMEAQKLLKNE---------ETKPWGRDTQAKLGSRLVELLIETAYVQHPVN-- 384
+A +LL ++ E PW + + +G L ++I V VN
Sbjct: 693 TDTPYNSRQAWQLLVHQNRDGASLDVEASPWSMEMRQSIGKFLYNIIINDVKVD--VNMF 750
Query: 385 ---------PADYSPPDVRPAFRHRFKTILKHPGQKTTKRYGVVECDPLVLEGLDRSAKH 435
PA Y RP R + HP T R P +
Sbjct: 751 KPNAQVKKLPAVYKVH--RPWGRLVRLELKPHP---TLSRLWSAAARPRL---------R 796
Query: 436 MLIPYVPMLVPPKKWKGYNKGGYLFL--------PSYVMRTHGSRKQQEALKSVTGNCMK 487
+ VP PP W G L P YVM G K+ E T M
Sbjct: 797 LRSSLVPARSPPAPWHSATASGACLLTTTSLIRMPFYVM---GLTKRLEEAPPAT---MY 850
Query: 488 KVFEALDTLGSTKWRVNKQVLSVLESIWVSGGNIAGLVDRNDVLIPEKPLSEDMTEVQKW 547
V + L+ LG W +N+++L + ++ SGG+ + D+ P L + +W
Sbjct: 851 PVLDGLNQLGDVPWVINQRILDLQLKVFRSGGD-----KKLDIPPPASSL-----DASQW 900
Query: 548 KW-------SVRKAKKINQER---HSQRCDTELKLSVARRMKDEEGFYYPHNLDFRGRAY 597
K ++R+ IN+ + HS CD KLS+A ++ F+ PHN+DFRGR Y
Sbjct: 901 KMEGKTGGEALRRRVVINRAKADMHSLWCDALYKLSLANHYRNV-TFWLPHNMDFRGRVY 959
Query: 598 PMHPHLNHLSSDVCRGVLEFAEGRPLGKSGLRWLKIHLANL 638
+ PH++ L D R +L A RPLG GL WLKIH NL
Sbjct: 960 AVGPHVSALGPDAARALLRLAGVRPLGARGLDWLKIHAVNL 1000
>gi|449531519|ref|XP_004172733.1| PREDICTED: DNA-directed RNA polymerase 1, mitochondrial-like,
partial [Cucumis sativus]
Length = 234
Score = 106 bits (265), Expect = 6e-20, Method: Compositional matrix adjust.
Identities = 48/92 (52%), Positives = 68/92 (73%)
Query: 174 KFNLLRRRQVKQETEAWERMVDEYKELEAKMIEKRLAPNLPHIKGLFLGWFGPLSEAIER 233
K+++LR+RQ+K ETEAWE EY++L A + E++LAPNLP++K LFLGWF PL +AI
Sbjct: 143 KYDMLRKRQIKIETEAWEEAAKEYQDLIADICEQKLAPNLPYMKSLFLGWFQPLRDAIVA 202
Query: 234 EQKMQRTKKQKAAYAPHIELLPADKVAVIVMH 265
EQ+ + K+ ++A + LLPAD +AVI MH
Sbjct: 203 EQESVKFKRSSPSHALYFHLLPADMMAVITMH 234
>gi|238578850|ref|XP_002388856.1| hypothetical protein MPER_12082 [Moniliophthora perniciosa FA553]
gi|215450527|gb|EEB89786.1| hypothetical protein MPER_12082 [Moniliophthora perniciosa FA553]
Length = 317
Score = 104 bits (260), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 56/160 (35%), Positives = 82/160 (51%), Gaps = 42/160 (26%)
Query: 826 AACYAAKVTLTALGEIFEAARSIMGWLGDCAKVIA----------------SEN------ 863
A+ Y AKV L +G++F A+ I WL CA++I+ S+N
Sbjct: 2 ASAYLAKVVLGCIGDLFTGAKDIQNWLNMCARLISKAIPGERLYEAMEEVKSKNVKAEGR 61
Query: 864 ------------------QPVRWTTPLGLPVVQPYCKNERHLIRTSLQVLALQREGNLVK 905
V WTTPLGLP+VQPY K +R I T++Q + + + +
Sbjct: 62 GRKAGKVLTFDFLKREQMNSVVWTTPLGLPIVQPYRKPKRRQIMTAMQTVYISDPNTVAE 121
Query: 906 IR--KQRTAFPPNFVHSLDGSHMMMTAVACRDAGLHFAGL 943
+ KQ +AFPPNF+HSLD +HMM+TA+ C+ G+ FA +
Sbjct: 122 VNTAKQASAFPPNFIHSLDATHMMLTALECQTRGMTFAAV 161
>gi|2281469|gb|AAB64106.1| RNA polymerase [Ascosphaera aggregata]
Length = 441
Score = 102 bits (253), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 90/340 (26%), Positives = 138/340 (40%), Gaps = 48/340 (14%)
Query: 626 SGLRWLKIHLANLFSGGVEKLSHDGRLAFVENHLYEIFDSAENPINGSRWWLT--AEDPF 683
+ + + KI+ AN F ++KLS D R+ +V+ D+ ++ IN + L AE
Sbjct: 6 TAINYFKIYGANCFGNKIDKLSFDDRIKWVD-------DNIDDIINFKNFNLINKAESKL 58
Query: 684 QCLAACINLSEALK---SSSPHSVISHLPIHQDGSCNGLQHYAALGRNTLEAAAVNL--- 737
+A C ++ L S ISHLPI D SCNG QH A L R+ A +N
Sbjct: 59 LFIAFCFEFNKFLNFLNDESSSYFISHLPIQLDASCNGFQHIAMLVRDGNLAKTLNFGIS 118
Query: 738 VAGEKPADVYSEIAVRVHEIMKRDSNKDPSKHPQALLAKILID-QVDRKLVKQTVMTSVY 796
P D YS IA + E N S + L D ++R ++K+ +MT Y
Sbjct: 119 YWDNIPDDFYSFIATHLKEFYDYALNSKSSDNKTIESIYRLKDLTINRAMIKKAIMTIPY 178
Query: 797 GVTFVGAREQIKRRL----------EEKG-----HITDDRQL------FAAACYAAKVTL 835
T V + +K E KG +D+ + F K L
Sbjct: 179 NATSVALIDYLKSDFDLIPKDQIPEEFKGDDLVYEFKNDKNIILKGNDFVVLYKGIKYIL 238
Query: 836 TALGEIFEAARSIMGWLGDCAKVIASENQPVRWTTPLGLPVVQPYCKNERHLI------R 889
T ++F + + + + + W P GL + Q Y K + I +
Sbjct: 239 T---KVFPSLEKLGEYFNSIVDICCLFKLTIPWVLPSGLVIEQSYAKTSKTRITPLNYSK 295
Query: 890 TSLQVLALQREGNLVKIRKQRTAFPPNFVHSLDGSHMMMT 929
S Q+ + + N K KQ+ PNF+HSLD S ++M
Sbjct: 296 ISYQINVVDK-SNFDK-NKQKAGLMPNFIHSLDSSTLIMV 333
>gi|159145024|gb|ABW90146.1| RNA polymerase [Pleurotus ostreatus]
Length = 967
Score = 101 bits (252), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 125/582 (21%), Positives = 229/582 (39%), Gaps = 117/582 (20%)
Query: 441 VPMLVPPKKWKGYNKGGYLFLPSYVMRTHGSRKQQEALKSVTGNCMKKVFEALDTLGSTK 500
+PM+ PKKW GGYL + + S + K ++ L +
Sbjct: 273 LPMICEPKKWSENTTGGYLLSEFNELNKNISIVRDNPYMKEHSKISKDQISTVNYLNNIP 332
Query: 501 WRVNKQVLSVLESIWVSGGNIAGLVDRNDVLIPE----KPLSEDMTEVQKWKWSVRKAKK 556
+ +N +L L W + N V+ E PLS+ E+ + K+
Sbjct: 333 FEINNTMLDYLLLEWK---------NTNSVIFKEYNKLHPLSK---ELDNNNLDSKMKKE 380
Query: 557 INQERHSQRCDTELKLSVARRMKDEEGFYYPHNLDFRGRAYPMHPHLNHLSSDVCRGVLE 616
I + +S + L+++ M+ E+ Y P LDFRGR YP+ +L++ SD+ R +L
Sbjct: 381 I-LKHNSIHWNYSNILNISALMR-EQTIYLPTFLDFRGRVYPIPVYLSYQGSDLARSLLL 438
Query: 617 FAE-GRPLGKSG---------------------LRWLKIHLANLFSGGVEKLSHDGRLAF 654
F G + + + ++K++LAN+F G+ KL+ + R+ +
Sbjct: 439 FKNVGLKIDYNNIIQQIVDKNIKNKLKKLILNDIDYVKLYLANVF--GLNKLNRNNRIKW 496
Query: 655 VENHLYEIFD--SAENPINGSRWWLTAEDPFQCLAACINLSEALKSSSPHSVISHL--PI 710
++ E+ + EN I ++ A++P Q ++ + ++ ++I+ + PI
Sbjct: 497 FNENIKEMLYLLNNENTIFNEKFLNKAKEPAQFISCLLEYNKY-----EQNIITEIKTPI 551
Query: 711 HQDGSCNGLQHYAALGRNTLEAAAVNLVAGEK--PADVYSEIAVRVHEIMKRDSNKDPSK 768
D +C+G+QH +AL + A VNL+ K P+D Y V ++ + D
Sbjct: 552 LFDATCSGIQHLSALTSDIEIAKLVNLIESTKDEPSDFYEFSITNVVNTIENLPDSDSHL 611
Query: 769 HPQALLAKILIDQVDRKLVKQTVMTSVYGVTFVGAREQIKRR-------------LEEKG 815
+ L + R +K ++MT Y VT +G +++ + L+ KG
Sbjct: 612 KNKLLKL-----NLKRSFLKHSIMTVPYNVTNIGIADKLSEQFLKIYISLEEATILQSKG 666
Query: 816 HI-------------TDDRQLFAAACYAAK-------------------VTLTALGEIFE 843
I T + + A Y K L LG I +
Sbjct: 667 LIASNLLSKIDSIDNTQTKNIKAKGFYIYKPLNSIIKDNFKQDEIIFTQNELNKLGNIIK 726
Query: 844 AA--------RSIMGWLGDCAKVIASENQPVRWTTPLGLPVVQPYCKNERHLIRTSL--- 892
+ + ++ PV W TP G+ V K + +RT++
Sbjct: 727 QTVLSLIPPFTKLKNYFDSIIDILNILEMPVYWITPSGMKVSVNSLKMNQKKVRTNMLKS 786
Query: 893 -QVLALQREGNLVKIRKQRTAFPPNFVHSLDGS--HMMMTAV 931
+ + + + + +T PNF+HSLD S HM++ +
Sbjct: 787 SKPITILVPTDSLDYSSIKTGLMPNFIHSLDASNIHMLINLI 828
>gi|227976930|gb|ACP44057.1| putative RNA polymerase [Vibrio phage 5486]
gi|227976932|gb|ACP44058.1| putative RNA polymerase [Vibrio phage 4e]
Length = 209
Score = 100 bits (249), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 67/204 (32%), Positives = 101/204 (49%), Gaps = 9/204 (4%)
Query: 572 LSVARRMKDEEGFYYPHNLDFRGRAYPMHPHLNHLSSDVCRGVLEFAEGRPLGKSGLRWL 631
L + RR DE+ Y+P +D+R R Y HLN SD+ + +L +PLGK GL WL
Sbjct: 2 LDLCRRFMDEDALYFPTCVDWRYRLY-FKSHLNPQGSDIQKALLLLGRKKPLGKRGLFWL 60
Query: 632 KIHLANLFSGGVEKLSHDGRLAFVENHLYEIFDSAENPINGSRWWLTAEDPFQC-LAACI 690
K H+A F G +K + R + E + I + ++P+N D F C LAA I
Sbjct: 61 KSHVATCF--GFDKPLFEERAKWTEERIDAIREWVKDPLNNED--FKDADEFWCMLAASI 116
Query: 691 NLSEALKSSSPHSVISHLPIHQDGSCNGLQHYAALGRNTLEAAAVNLV--AGEKPADVYS 748
L EAL S P S++ + D + +G QH++A+ R+ + NL AD+Y
Sbjct: 117 QLIEALDSPDPEKYKSNIAVALDATNSGGQHFSAMLRDPIGGKLTNLFWDGNLTKADLYM 176
Query: 749 EIAVRVHEIMKRDSNKDPSKHPQA 772
++ R +K + +DP QA
Sbjct: 177 DVKQRTDSKIKV-ALRDPETIVQA 199
>gi|227976920|gb|ACP44052.1| putative RNA polymerase [Vibrio phage 6e]
gi|227976924|gb|ACP44054.1| putative RNA polymerase [Vibrio phage 5312]
gi|227976926|gb|ACP44055.1| putative RNA polymerase [Vibrio phage 512]
gi|227976928|gb|ACP44056.1| putative RNA polymerase [Vibrio phage 5e]
Length = 209
Score = 100 bits (248), Expect = 5e-18, Method: Compositional matrix adjust.
Identities = 67/204 (32%), Positives = 101/204 (49%), Gaps = 9/204 (4%)
Query: 572 LSVARRMKDEEGFYYPHNLDFRGRAYPMHPHLNHLSSDVCRGVLEFAEGRPLGKSGLRWL 631
L + RR DE+ Y+P +D+R R Y HLN SD+ + +L +PLGK GL WL
Sbjct: 2 LDLCRRFMDEDALYFPTCVDWRYRLY-FKSHLNPQGSDIQKALLLLGRKKPLGKRGLFWL 60
Query: 632 KIHLANLFSGGVEKLSHDGRLAFVENHLYEIFDSAENPINGSRWWLTAEDPFQC-LAACI 690
K H+A F G +K + R + E + I + ++P+N D F C LAA I
Sbjct: 61 KSHVATCF--GFDKPLFEERAKWTEERIDAIREWVKDPLNNED--FKDADEFWCMLAASI 116
Query: 691 NLSEALKSSSPHSVISHLPIHQDGSCNGLQHYAALGRNTLEAAAVNLV--AGEKPADVYS 748
L EAL S P S++ + D + +G QH++A+ R+ + NL AD+Y
Sbjct: 117 QLIEALDSPDPEKYESNIAVALDATNSGGQHFSAMLRDPIGGKLTNLFWDGNLTKADLYM 176
Query: 749 EIAVRVHEIMKRDSNKDPSKHPQA 772
++ R +K + +DP QA
Sbjct: 177 DVKQRTDSKIKV-ALRDPETIVQA 199
>gi|158297512|ref|XP_317735.4| AGAP007778-PA [Anopheles gambiae str. PEST]
gi|157015231|gb|EAA12908.5| AGAP007778-PA [Anopheles gambiae str. PEST]
Length = 869
Score = 99.0 bits (245), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 59/177 (33%), Positives = 93/177 (52%), Gaps = 11/177 (6%)
Query: 441 VPMLVPPKKWKGYNKGGYLFLPSYVMRT-HGSRKQQEALKSVTGNCMKKVFEALDTLGST 499
VPML PP+ W GGY+ S ++R H + +Q E + M +AL+ L S
Sbjct: 696 VPMLCPPQPWSTPRNGGYILAESDLIRLPHQAHQQTERIDDAEPQDMYPTLDALNQLASI 755
Query: 500 KWRVNKQVLSVLESIWVSGGNIAGLVDRNDVLIPEKPLSE-----DMTEVQKWKWSVRKA 554
W VN Q+L V+ ++ +GGN V +P P++E +M+ +K+ ++
Sbjct: 756 PWVVNGQILDVIVEVFNNGGNAKLDVPEPPSSLP--PVTETVPRSEMSGYEKYHLLRKRL 813
Query: 555 --KKINQERHSQRCDTELKLSVARRMKDEEGFYYPHNLDFRGRAYPMHPHLNHLSSD 609
++ + +S CD +LS+A +D+ F+ P N+DFRGR YP+ PHLNHL D
Sbjct: 814 YHRRKQGDMYSLWCDALYRLSLASHYRDKV-FWLPQNIDFRGRVYPIPPHLNHLGHD 869
>gi|39935593|ref|NP_947869.1| DNA-dependent RNA polymerase [Rhodopseudomonas palustris CGA009]
gi|39649446|emb|CAE27968.1| possible DNA-dependent RNA polymerase [Rhodopseudomonas palustris
CGA009]
Length = 540
Score = 96.7 bits (239), Expect = 5e-17, Method: Compositional matrix adjust.
Identities = 83/288 (28%), Positives = 129/288 (44%), Gaps = 36/288 (12%)
Query: 675 WWLTAEDPFQCLAACINLSEALKSSSPHSVISHLPIHQDGSCNGLQHYAALGRNTLEAAA 734
+W A+ PF LAACI L+ AL + + LP DGSC+G QH A R+ +A
Sbjct: 8 FWTQADKPFLFLAACIELTNALAYGPGY--VCGLPCSWDGSCSGAQHLCAATRSE-DAWK 64
Query: 735 VNLVAGEKPADVYSEIAVRVHEIMKRDSNKDPSKHPQALLAKILIDQVD-RKLVKQTVMT 793
VNL+ ++ D+Y+ + + M RD+ DP +++ IL + D RK+ K+ MT
Sbjct: 65 VNLIGNDEVHDLYTIVGNAAKQSMARDT--DP------MVSTILAYEGDWRKVFKRNTMT 116
Query: 794 SVYGVTFVGAREQ--------------IKRRLEEKGHITDDRQLFAAACYAAKVTLTALG 839
+ YG G +Q K+R + T A+ AA G
Sbjct: 117 TFYGSKGFGMAQQHMDDLMEPLSREVMQKKRAKHPFGQTRKEHHAASRLLAAHAAAAIKG 176
Query: 840 EIFEAARSIMGWLGDCAKVIASENQPVRWTTPLGLPVVQPYCK--NER-------HLIRT 890
EI A ++ M ++ + ++A E +P+ WTTP+GLP Y ER H +R
Sbjct: 177 EIPLAIKA-MEFIQKLSAMMAHEGKPLEWTTPIGLPWSNRYHDPVTERVNLWMHDHGVRR 235
Query: 891 SLQVLALQREGNLVKIRKQRTAFPPNFVHSLDGSHMMMTAVACRDAGL 938
+ + + PNFVH+ D +H++ T A R G+
Sbjct: 236 PFRPVVADGYKKTINKNHSVNGSAPNFVHACDAAHLLRTVNAARAEGI 283
>gi|2239138|emb|CAA72337.1| putative T7/T3-like RNA polymerase [Hordeum vulgare subsp. vulgare]
Length = 129
Score = 94.4 bits (233), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 39/60 (65%), Positives = 52/60 (86%)
Query: 884 ERHLIRTSLQVLALQREGNLVKIRKQRTAFPPNFVHSLDGSHMMMTAVACRDAGLHFAGL 943
+ ++IRTSLQ LAL+REG+ + ++Q+ AFPPNFVHSLD SHMMMTA+ C++AGLHFAG+
Sbjct: 1 KNYMIRTSLQCLALRREGDAIATQRQKAAFPPNFVHSLDSSHMMMTAITCKEAGLHFAGV 60
>gi|147865940|emb|CAN78837.1| hypothetical protein VITISV_037333 [Vitis vinifera]
Length = 105
Score = 92.8 bits (229), Expect = 8e-16, Method: Compositional matrix adjust.
Identities = 43/68 (63%), Positives = 53/68 (77%)
Query: 612 RGVLEFAEGRPLGKSGLRWLKIHLANLFSGGVEKLSHDGRLAFVENHLYEIFDSAENPIN 671
R +LE AE LGKSGL WLKIHLANL++ GV+KLS++G +AF ENHL +IFDSA+ P+
Sbjct: 38 RAILELAEEHLLGKSGLHWLKIHLANLYAXGVDKLSYEGCVAFTENHLEDIFDSADRPLE 97
Query: 672 GSRWWLTA 679
G RW L A
Sbjct: 98 GRRWCLFA 105
>gi|1236336|gb|AAB01080.1| T3/T7-like RNA polymerase, partial [Pycnococcus provasolii]
Length = 217
Score = 92.0 bits (227), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 64/217 (29%), Positives = 95/217 (43%), Gaps = 70/217 (32%)
Query: 794 SVYGVTFVGAREQIKRRLEEKGHIT--DDRQLFAAACYAAKVTLTALGEIFEAARSIMGW 851
SVYGVT++GAR+QI+ RL E+G + R++ A YA +T++ L ++F+ AR++M W
Sbjct: 1 SVYGVTWIGARDQIESRLRERGWPAGLERREV---ARYATDMTMSGLADVFQDARNVMAW 57
Query: 852 LGDCAKVIAS-------------------------------------------------E 862
LG CA + + E
Sbjct: 58 LGTCASITSKNWKFEKGGIEIDPEEVDEKEFRKRSFNPMVRTRDVEMCKQRELHSNADRE 117
Query: 863 NQPVRWTTPLGLPVVQP--------------YCKNERHLIRTSLQVLA--LQREGNLVKI 906
+ + W L + QP Y K + I T LQ ++ + E V
Sbjct: 118 KEEIEWVDDPNLHIGQPMRWTTPMGMVCVQPYRKVDNKKINTVLQTISVDIHSEALPVVS 177
Query: 907 RKQRTAFPPNFVHSLDGSHMMMTAVACRDAGLHFAGL 943
KQR+AF PN+VHS+D +HMM TA C G+ FAG+
Sbjct: 178 AKQRSAFAPNYVHSIDSAHMMKTAEECIGRGMDFAGV 214
>gi|392973304|ref|YP_006489261.1| RNA polymerase [Colwellia phage 9A]
gi|388549474|gb|AFK66671.1| RNA polymerase [Colwellia phage 9A]
Length = 878
Score = 91.3 bits (225), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 111/485 (22%), Positives = 191/485 (39%), Gaps = 109/485 (22%)
Query: 552 RKAKKINQERHSQRCDTELKLSVARRMKDEEGFYYPHNLDFRGRAYP-MHPHLNHLSSDV 610
RK K + +R + C +++ + + Y+ ++LD R R YP +N SD
Sbjct: 327 RKEAKKSLDRSYKTC-----MTLVSELDKYDEIYWAYSLDRRSRVYPSAMTGINLQGSDY 381
Query: 611 CRGVLEFAEGRPL-----GKSG----LRWLKIHLANLFSGGV--EKLSHDGR------LA 653
+ +EFA G PL G+ G ++ + H N GV +KL+ + L+
Sbjct: 382 QKANVEFAVGLPLDFDGDGEGGEYAIIKTMCNHWGNDSGNGVKTDKLTREQAQNWLHGLS 441
Query: 654 FVENHLYEIFDSAENPINGSRWWLTAEDPFQCLAACINLSEALKSSSPHS---VISHLPI 710
+ I + A +P+ S+ W+ A+ P Q LAA + + H+ +SHL
Sbjct: 442 GYKGSESWILECANDPLE-SKAWMKADKPLQFLAAILEWKDWKAYRVLHNDYKFVSHLCD 500
Query: 711 HQDGSCNGLQHYAALGRNTLEAAAVNLVAGEKPA-DVYSEIAVRVH-------------- 755
D SC+G Q +A+ R+ + A NL+ P D+Y +A +V
Sbjct: 501 PNDASCSGAQILSAMTRDMVGAMHTNLL--NMPVQDLYMAVARKVSENLFSMIGECELSQ 558
Query: 756 ---------------------EIMKRDSNKDPSKH------PQALLAKIL---------- 778
E+ ++ + H P+ + K+
Sbjct: 559 DWLGRSNVIKQIQDVMGGVSVEVFTDETQEIVLNHVGDGLSPEEIYDKLYTELSKVECER 618
Query: 779 IDQVDRKLVKQTVMTSVYGVTFVGAREQ-----IKRRLEEKGHITDDRQLFAAACYAAKV 833
+ + R LVK+ VM Y T G E + ++ EE + AA + +
Sbjct: 619 LSLIVRNLVKKPVMVKFYSGTRYGNIEHCNEFVVDKQWEEYFRCDGTGK---AAAFMGNL 675
Query: 834 TLTALGEIFEAARSIMGWLGDCAKVIASENQPVRWTTPLGLPVVQPYCKNERHLIRTS-- 891
++ ++ A +M W A V+ +EN PVRWTTP+G K+ IR S
Sbjct: 676 IFDSINQVIAGAGQVMEWFVHVADVLGNENLPVRWTTPVGFKA--SMAKHSMKKIRLSVL 733
Query: 892 -----------LQVLALQREGNLVK-----IRKQRTAFPPNFVHSLDGSHMMMTAVACRD 935
L+V L + + K + K ++ P+ VHSLD + +M + C+
Sbjct: 734 FHGESGYNEFTLKVPMLLKTEDGTKAYKLDVNKMKSGIAPDIVHSLDAALIMKVSERCKR 793
Query: 936 AGLHF 940
G+ +
Sbjct: 794 EGIEY 798
>gi|11466092|ref|NP_052999.1| rna polymerase [Pleurotus ostreatus]
gi|5107017|gb|AAD39926.1|AF126285_2 RNA polymerase [Pleurotus ostreatus]
Length = 903
Score = 90.9 bits (224), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 124/578 (21%), Positives = 225/578 (38%), Gaps = 114/578 (19%)
Query: 441 VPMLVPPKKWKGYNKGGYLFLPSYVMRTHGSRKQQEALKSVTGNCMKKVFEALDTLGSTK 500
+PM+ PKKW GGYL + + S + K ++ L +
Sbjct: 273 LPMICEPKKWSENTTGGYLLSEFNELNKNISIVRDNPYMKEHSKISKDQISTVNYLNNIP 332
Query: 501 WRVNKQVLSVLESIWVSGGNIAGLVDRNDVLIPE----KPLSEDMTEVQKWKWSVRKAKK 556
+ +N +L L W + N V+ E PLS+ E+ + K+
Sbjct: 333 FEINNTMLDYLLLEWK---------NTNSVIFKEYNKLHPLSK---ELDNNNLDSQMKKE 380
Query: 557 INQERHSQRCDTELKLSVARRMKDEEGFYYPHNLDFRGRAYPMHPHLNHLSSDVCRGVLE 616
I + +S + L+++ M+ E+ Y P LDFRGR YP+ +L++ SD+ + +
Sbjct: 381 I-LKHNSIHWNYSNILNISALMR-EQTIYLPTFLDFRGRVYPIPVYLSYQGSDLAKIFII 438
Query: 617 FAE-GRPLGKSGL---------------------RWLKIHLANLFSGGVEKLSHDGRLAF 654
G + + + ++K++LAN+F G+ KL+ + R+ +
Sbjct: 439 IKNVGLKIDYNNIIQQIVDKNIKNKLKKLILNDIDYVKLYLANVF--GLNKLNRNNRIKW 496
Query: 655 VENHLYEIFD--SAENPINGSRWWLTAEDPFQCLAACINLSEALKSSSPHSVISHL--PI 710
+++ E+ + +N I ++ A++P Q ++ + ++ ++IS + PI
Sbjct: 497 FNDNIKEMLYLLNNDNKIFNEKFLNKAKEPAQFISCLLGYNKY-----EENIISEIKRPI 551
Query: 711 HQDGSCNGLQHYAALGRNTLEAAAVNLVAGEK--PADVYSEIAVRVHEIMKRDSNKDPSK 768
D +C+G+QH +AL + A VNL+ K P+D Y + I+ N
Sbjct: 552 LFDATCSGIQHLSALTSDIEIAKLVNLIESTKDEPSDFYE---FSITNIVNTIENFQIDS 608
Query: 769 HPQALLAKILIDQVDRKLVKQTVMTSVYGVTFVGAREQIKRR---------LEEKGHI-- 817
H + L K + R +K ++MT Y V EQ + L+ KG I
Sbjct: 609 HLKIKLLK---LNLKRSFLKHSIMTVPYNVRADKLSEQFNKSYISLEEATILKSKGLIPS 665
Query: 818 -----------TDDRQLFAAACYAAK-------------------VTLTALGEIFEAA-- 845
T + + A Y K L LG I +
Sbjct: 666 NLLNKIDSIDNTQTKNIKAKGFYIYKPLNSIIKDNFKQDEIIFTQNELNKLGNIIKQTVL 725
Query: 846 ------RSIMGWLGDCAKVIASENQPVRWTTPLGLPVVQPYCKNERHLIRTSL----QVL 895
+ + ++ PV W TP G+ V K + +RT++ + +
Sbjct: 726 SLIPPFTKLKNYFDSIIDILNILEMPVYWITPSGMKVSVNSLKMNQKKVRTNMLKSSKPI 785
Query: 896 ALQREGNLVKIRKQRTAFPPNFVHSLDGS--HMMMTAV 931
+ + + +T PNF+HSLD S HM++ +
Sbjct: 786 TILVPTDSLDYSSIKTGLMPNFIHSLDASNIHMLINLI 823
>gi|10119856|dbj|BAB13498.1| RNA polymerase [Flammulina velutipes]
Length = 1708
Score = 90.1 bits (222), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 97/428 (22%), Positives = 183/428 (42%), Gaps = 83/428 (19%)
Query: 441 VPMLVPPKKWKG-----------YNKGGYLF--LPSY-----VMRTHGSRKQQEALKSVT 482
+PM+ P W+G GGYL L + ++R + K+ + S
Sbjct: 1001 LPMVCQPNLWEGEIDPLSSKYLITKVGGYLLDDLNEFSENRNIIRNNKYNKESSEVSSYQ 1060
Query: 483 GNCMKKVFEALDTLGSTKWRVNKQVLSVLESIWVSGGNIAGLVDRNDVLIPEK--PLSED 540
N A++ L K+ +NK +L ++ W ++ D +I E L D
Sbjct: 1061 VN-------AINYLNKQKFDINKDMLEFVKEEW----------NKTDSIIFENCNHLHPD 1103
Query: 541 MTEVQKWKWSVRKAKKINQERHSQRCDTELKL-SVARRMKDEEGFYYPHNLDFRGRAYPM 599
+K + + ++I H+ + L + ++A KD FY+P +DFRGR YP+
Sbjct: 1104 TDSFKK----LNQKERIKVTAHNSKYWNYLNIINLAILFKDT-SFYFPTFMDFRGRIYPI 1158
Query: 600 HPHLNHLSSDVCRGVLEFAE----------GRPLGK-------------SGLRWLKIHLA 636
+ + S+D+ R +L F+ +G + L +LKI++A
Sbjct: 1159 STYFTYQSNDLARSLLLFSNVNHKHSDDILKNTIGHLVSLDNLFLNCHLADLDYLKIYIA 1218
Query: 637 NLFSGGVEKLSHDGRLAFVENH---LYEIFDSAENPINGSRWWLTAEDPFQCLAACINLS 693
N++ G +KL R+ ++ ++ + ++ ++ S +++ E PFQ L++ I+L
Sbjct: 1219 NVYGNGKDKLLLKNRIKWLNSNWEEMINLYQKDKDAFYKSYVYISKE-PFQFLSSFISLY 1277
Query: 694 EALKSSSPHSVISHLPIHQDGSCNGLQHYAALGRNTLEAAAVNLVAGEK--PADVYSEIA 751
+ + PI D +C+G+QH +AL +N VNL+ E P D Y+ A
Sbjct: 1278 NHILYKQEIKI----PILFDATCSGIQHLSALSKNIDIGKLVNLINNEDQSPNDFYT-FA 1332
Query: 752 VRVHEIMKRDSNKDPSKHPQALLAKILIDQVDRKLVKQTVMTSVYGVTFVGAREQIKRRL 811
+ I ++ +D + L K RK +K +MT Y G ++++
Sbjct: 1333 IN-KSIEAFNTIEDLEFREKTLKLK-----YSRKWLKNIIMTIPYNSKEYGISQKLEEEF 1386
Query: 812 EEKGHITD 819
+K +++
Sbjct: 1387 SDKIFVSN 1394
Score = 39.3 bits (90), Expect = 9.9, Method: Compositional matrix adjust.
Identities = 24/83 (28%), Positives = 36/83 (43%), Gaps = 6/83 (7%)
Query: 855 CAKVIASENQPVRWTTPLGLPVVQPYCKNERHLIRTSL----QVLALQREGNLVKIRKQR 910
KV+ N P+ W TP G+ V K E I+TSL + + + R
Sbjct: 1495 IIKVLKIHNLPIFWNTPAGMKVYMSTRKMESKKIKTSLIKNVNPIGITVPMEQMDYRSMN 1554
Query: 911 TAFPPNFVHSLDGS--HMMMTAV 931
PN +HSLD S H+++ +
Sbjct: 1555 NGLMPNLIHSLDASNIHILVNNI 1577
>gi|78212329|ref|YP_381108.1| DNA-directed RNA polymerase [Synechococcus sp. CC9605]
gi|78196788|gb|ABB34553.1| DNA-directed RNA polymerase [Synechococcus sp. CC9605]
Length = 507
Score = 88.2 bits (217), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 116/508 (22%), Positives = 206/508 (40%), Gaps = 65/508 (12%)
Query: 257 DKVAVIVMHKMMGLVMAGHEDRCVQVVQAAVHIGMAIEQEIRIHSFLEKTKNYKRKKIIA 316
D V+ + + K++ + R IG AI++E+R + F + KKI
Sbjct: 43 DHVSFVALRKLIDCIHTKQNQR----THVCTAIGKAIQEELR-NQFFTLNLDEDGKKI-- 95
Query: 317 DTEEVLSKEKELLRKR-VNSLIKSKRVMEAQKLLKNEETKPWGRDTQAKLGSRLVELLIE 375
++ L K + + R + + +R + + K++ + W + GS L++ ++
Sbjct: 96 -RDKRLKKPRSTPKYRNLGVKLSMERRLLEKGWAKDDLYQDWPSLLCTQFGSLLLDAAVK 154
Query: 376 TAYVQHPVNPADYSPPDVRPAFRHRFKTILKHPGQKTTKRYGVVECDPLVLEGLDRSAKH 435
Y + P K + K+ +K V P + E L + +
Sbjct: 155 ERYFEVPT------------------KWVAKNRSEK------FVVPSPALEEHLTKRTEQ 190
Query: 436 M--LIPYVPMLV-PPKKWK------GYNKGGYLFLPSYVMRTHGSRKQQEAL---KSVTG 483
+ L+ +L+ PP W+ +N G LP+ +RK L + +
Sbjct: 191 IDELVTTQEVLIEPPLDWQLQDGEARFNFSGGYHLPT-------TRKPNNPLCRGRHYST 243
Query: 484 NCMKKVFEALDTLGSTKWRVNKQVLSVLESIWVSGGNIAGLVD--RNDVL---IPEKPLS 538
L+TLG T ++V+ QV V++ W +IAG N L +PE +
Sbjct: 244 RFGSDAINLLNTLGRTAFQVDPQVFEVIDDCWDKQHSIAGFNSPFENPQLNQEMPEHLKA 303
Query: 539 EDMTEVQKWKWSVRKA--KKINQERHSQRCDTELKLSVARRMKDEEGFYYPHNLDFRGRA 596
+ + W R+A ++ Q+ + + L AR+ F+ + DFRGR
Sbjct: 304 LENKHPDRVAWRKRQAYLHELEQKHIEKTLSVQAVLFSARKNLTRPRFWLSWSCDFRGRI 363
Query: 597 YPMHPHLNHLSSDVCRGVLEFAEGRPLGKSGLRWLKIHLANLFSGGVEKLSHDGRLAFVE 656
Y L+ S D R VL FA+G L + G W + F G K S R +
Sbjct: 364 YSQQSWLDPQSRDFERSVLRFADGCRLDEQGKEWAARAVGAAFGGT--KQSFASRSQWTY 421
Query: 657 NHLYEIFDSAENPINGSRWWLTAEDPFQCLAACINLSE-ALKSSSPHSVISHLPIHQDGS 715
++ I A +PI S W AE+P+Q L ++ + L+ + P + +P+ D +
Sbjct: 422 DNAELIAAIASDPIRHSSQWENAEEPWQFLQLAMDWNAVVLQQTKP---LWQVPVSVDST 478
Query: 716 CNGLQHYAALGRNTLEAAAVNLVAGEKP 743
+GLQ +A+ R+ + NL+ E P
Sbjct: 479 ASGLQLLSAMRRDPVGMKWTNLIPSEDP 506
>gi|238604555|ref|XP_002396229.1| hypothetical protein MPER_03573 [Moniliophthora perniciosa FA553]
gi|215468398|gb|EEB97159.1| hypothetical protein MPER_03573 [Moniliophthora perniciosa FA553]
Length = 184
Score = 87.0 bits (214), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 64/195 (32%), Positives = 100/195 (51%), Gaps = 23/195 (11%)
Query: 392 DVRPAFRHRFKTILKHPGQKTTKRYGVVECDPLVLEGLDRSA-KHMLIP-YVPMLVPPKK 449
+V+PAF H + + GQK GV+ +P V + + + A + L P ++PML+ PK
Sbjct: 2 EVQPAFYHAY---VHQRGQKL----GVIRLNPTVSDRMSKDAVRETLHPRHLPMLIKPKP 54
Query: 450 WKGYNKGGYLFLPSYVMRTHGSRKQQEALKSVT--GNCMKKVFEALDTLGSTKWRVNKQV 507
W YN+GGY++ MR S +QQ L+ + GN ++ V+ LD LGST W++NK++
Sbjct: 55 WLNYNEGGYMYNRVSAMRYKDSVEQQSYLRRASELGN-VELVYAGLDVLGSTPWKINKKI 113
Query: 508 LSVLESIWVSGGNIAGLVDRN-DVLIPEKPLSED----MTEVQKWK-WSVRKAKKINQER 561
V+ +W SG + L D PE+P + + + K K W KA
Sbjct: 114 FDVVLEVWNSGERLGKLPPAGYDEPEPEQPKDGNPKNRVIYITKMKNWLQNKASN----- 168
Query: 562 HSQRCDTELKLSVAR 576
HS RC ++ +AR
Sbjct: 169 HSDRCSVNYRVEIAR 183
>gi|328786523|ref|XP_003250805.1| PREDICTED: DNA-directed RNA polymerase, mitochondrial-like [Apis
mellifera]
Length = 178
Score = 87.0 bits (214), Expect = 4e-14, Method: Composition-based stats.
Identities = 41/106 (38%), Positives = 62/106 (58%), Gaps = 15/106 (14%)
Query: 841 IFEAARSIMGWLGDCAKVIAS---ENQPVRWTTPLGLPVVQPYCKNERHLIRTSLQVLAL 897
+F++AR I W +CA++I+S EN V W TPLGLP++QPY K ++ + + +
Sbjct: 1 MFKSAREIQDWFTECARIISSICCEN--VEWITPLGLPIIQPYTKKLNKYVKINGKCDTI 58
Query: 898 QREGNLVKIRKQRTAFPPNFVHSLDGSHMMMTAVACRDAGLHFAGL 943
KQR AF PNF+HSLD +HMM+T++ C + F +
Sbjct: 59 ----------KQRNAFAPNFIHSLDSTHMMLTSLHCNSQNITFVSV 94
>gi|152125995|gb|ABS29326.1| RNA polymerase [Fusarium proliferatum]
gi|152125997|gb|ABS29327.1| RNA polymerase [Fusarium proliferatum]
gi|152125999|gb|ABS29328.1| RNA polymerase [Fusarium proliferatum]
gi|152126001|gb|ABS29329.1| RNA polymerase [Fusarium proliferatum]
gi|152126003|gb|ABS29330.1| RNA polymerase [Fusarium proliferatum]
gi|152126005|gb|ABS29331.1| RNA polymerase [Fusarium proliferatum]
Length = 371
Score = 85.1 bits (209), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 76/295 (25%), Positives = 127/295 (43%), Gaps = 45/295 (15%)
Query: 441 VPMLVPPKKWKGYNKGGYL----------FLPSYVMRTHGSRKQQEALKSVTGNCMKKVF 490
+PM+V PK++ GGYL F + + L S+ N MK
Sbjct: 107 LPMIVKPKEYTITKLGGYLLNDVEYSEPLFTSKIAYKKSSEVDPKGELYSIINNMMK--- 163
Query: 491 EALDTLGSTKWRVNKQVLSVLESIWVSGGNIAGLVDRNDVLIPEKPLSEDMTEVQKWKWS 550
T +++NK++L L V D++ ++I S E K K
Sbjct: 164 --------TPFKINKELLDYL----VLNN------DKHKLIID----SNKEHEYSKIKNR 201
Query: 551 VRKAKKINQERHSQRCDTELKLSVARRMKDEEGFYYPHNLDFRGRAYPMHPHLNHLSSDV 610
+ ++ Q+ S++ + L +A KD Y+P LD RGR YP +LN+ S++
Sbjct: 202 TKIEERKFQQFMSEKMLEQYILKIANTFKDVPEIYFPIMLDNRGRLYPRPAYLNYQGSEL 261
Query: 611 CRGVLEFAEGRPLGK---SGLRWLKIHLANLFSGGVEKLSHDGRLAFVENHLYEIFDSAE 667
+ +L FA + + S + +L + + G+EK S++ R+ +V+ + I D
Sbjct: 262 AKSLLLFANPDIINRDDHSSIEYLLAYGGTCYGNGLEKKSYEARIEWVKENWDTILD--- 318
Query: 668 NPINGSRWWLTAEDPFQCLAACINLSEALK--SSSPHSVISHLPIHQDGSCNGLQ 720
S A++ F LA C + K +SS ++LPI DG+CNG Q
Sbjct: 319 --FENSDLLEKADEKFLFLAFCFEIRRFNKFLASSDFEFKTYLPIQLDGTCNGFQ 371
>gi|207345726|gb|EDZ72451.1| YFL036Wp-like protein [Saccharomyces cerevisiae AWRI1631]
Length = 224
Score = 84.0 bits (206), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 37/80 (46%), Positives = 51/80 (63%), Gaps = 2/80 (2%)
Query: 866 VRWTTPLGLPVVQPYCKNERHLIRTSLQVLALQR--EGNLVKIRKQRTAFPPNFVHSLDG 923
V WTTPLGLP+VQPY + + + T+LQ + + N V R+Q+ PPNF+HSLD
Sbjct: 18 VIWTTPLGLPIVQPYREESKKQVETNLQTVFISDPFAVNPVNARRQKAGLPPNFIHSLDA 77
Query: 924 SHMMMTAVACRDAGLHFAGL 943
SHM+++A C GL FA +
Sbjct: 78 SHMLLSAAECGKQGLDFASV 97
>gi|224114325|ref|XP_002332398.1| predicted protein [Populus trichocarpa]
gi|222832721|gb|EEE71198.1| predicted protein [Populus trichocarpa]
Length = 173
Score = 83.2 bits (204), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 48/118 (40%), Positives = 73/118 (61%), Gaps = 6/118 (5%)
Query: 259 VAVIVMHKMMGLVMAGHEDRCVQVVQAAVHIGMAIEQEIRIHSFLEKTKNYKR-----KK 313
++VI MH++ +VM G E C +V AA IG AIEQEIRIH+ LEKT+ K K
Sbjct: 1 MSVIAMHQLAAMVMTGGEHGCARVGTAACMIGDAIEQEIRIHNILEKTRKKKEKANDSKN 60
Query: 314 IIADTEEVLSKEKELLRKRVNSLIKSKRVMEAQKLLK-NEETKPWGRDTQAKLGSRLV 370
+ + KE+E LRK+V LIK +++ +K++K +++KPW D +AK+ + L+
Sbjct: 61 GVEGESPAVMKEQENLRKKVTDLIKKQKLPAVRKIVKAKDDSKPWNADARAKVITILI 118
>gi|224114299|ref|XP_002332393.1| predicted protein [Populus trichocarpa]
gi|222832716|gb|EEE71193.1| predicted protein [Populus trichocarpa]
Length = 173
Score = 82.4 bits (202), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 41/76 (53%), Positives = 52/76 (68%)
Query: 159 YKRIKLQEYREMKKRKFNLLRRRQVKQETEAWERMVDEYKELEAKMIEKRLAPNLPHIKG 218
++R +L+ + RK +LRRRQVK E EAWE EYKEL M E LAPNLP++K
Sbjct: 85 FRRRRLRANPGIGSRKHRVLRRRQVKIEAEAWELATKEYKELLKDMCEHNLAPNLPYMKS 144
Query: 219 LFLGWFGPLSEAIERE 234
LFLGWF P ++AIE+E
Sbjct: 145 LFLGWFEPFTDAIEQE 160
>gi|242086118|ref|XP_002443484.1| hypothetical protein SORBIDRAFT_08g020310 [Sorghum bicolor]
gi|241944177|gb|EES17322.1| hypothetical protein SORBIDRAFT_08g020310 [Sorghum bicolor]
Length = 118
Score = 82.0 bits (201), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 53/103 (51%), Positives = 70/103 (67%), Gaps = 2/103 (1%)
Query: 178 LRRRQVKQETEAWERMVDEYKELEAKMIEKRLAPNLPHIKGLFLGWFGPLSEAIEREQKM 237
LR RQVK E EAWER +EY+E+E + +++RLA L K LF+GWF L E I ++ M
Sbjct: 16 LRLRQVKVEIEAWERTDEEYREIEREKLDRRLALALLCDKSLFVGWFESLWETITCDRHM 75
Query: 238 QRTKKQKAAYA--PHIELLPADKVAVIVMHKMMGLVMAGHEDR 278
QR K+ K Y ++ LL ADKV VIVMHKMMGL+M+ +D+
Sbjct: 76 QRWKRVKHVYGLRQYLLLLLADKVVVIVMHKMMGLLMSTKDDK 118
>gi|227976922|gb|ACP44053.1| putative RNA polymerase [Vibrio phage 1032]
Length = 209
Score = 81.6 bits (200), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 66/204 (32%), Positives = 102/204 (50%), Gaps = 9/204 (4%)
Query: 572 LSVARRMKDEEGFYYPHNLDFRGRAYPMHPHLNHLSSDVCRGVLEFAEGRPLGKSGLRWL 631
L + RR DE+ Y+P +D+R R Y HLN SD+ + +L + LGK GL WL
Sbjct: 2 LDLCRRFMDEDALYFPTCVDWRYRLY-FKSHLNPQGSDIQKALLLLGRKKKLGKRGLFWL 60
Query: 632 KIHLANLFSGGVEKLSHDGRLAFVENHLYEIFDSAENPINGSRWWLTAEDPFQC-LAACI 690
K H+A F G +K + R+A+ + I + ++P+N D F C LAA I
Sbjct: 61 KSHVATCF--GFDKPLFEQRVAWTNERIDAIREWVKDPLNNED--FKDADEFWCMLAASI 116
Query: 691 NLSEALKSSSPHSVISHLPIHQDGSCNGLQHYAALGRNTLEAAAVNLV--AGEKPADVYS 748
L EAL S P + S++ + D + +G QH++A+ R+ + NL AD+Y
Sbjct: 117 QLIEALDSGDPENYESNIAVALDATNSGGQHFSAMLRDPVGGKLTNLFWDGNLTKADLYM 176
Query: 749 EIAVRVHEIMKRDSNKDPSKHPQA 772
++ R +K + +DP QA
Sbjct: 177 DVKQRTDSKIKV-ALRDPETIVQA 199
>gi|224148781|ref|XP_002336713.1| predicted protein [Populus trichocarpa]
gi|222836570|gb|EEE74977.1| predicted protein [Populus trichocarpa]
Length = 80
Score = 80.9 bits (198), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 38/67 (56%), Positives = 53/67 (79%)
Query: 466 MRTHGSRKQQEALKSVTGNCMKKVFEALDTLGSTKWRVNKQVLSVLESIWVSGGNIAGLV 525
MR HG+++Q+EA+K+ ++ VFEALDTLG+T+WRVNK+VLSV + IW +GG +A LV
Sbjct: 1 MRIHGAKQQREAVKTAPRKQLQPVFEALDTLGNTRWRVNKRVLSVGDRIWSNGGCLADLV 60
Query: 526 DRNDVLI 532
D +DV I
Sbjct: 61 DHSDVSI 67
>gi|328751377|ref|YP_004347438.1| rnapol (mitochondrion) [Moniliophthora roreri]
gi|308912875|gb|ADO51620.1| rnapol (mitochondrion) [Moniliophthora roreri]
Length = 1041
Score = 80.1 bits (196), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 99/421 (23%), Positives = 183/421 (43%), Gaps = 76/421 (18%)
Query: 441 VPMLVPPKKWKGYNKGGYLFLPSY--------VMRTHGSRKQQEALKSVTGNCMKKVFEA 492
+PM+ PK W N GGYL L + ++R++ K Q +
Sbjct: 341 LPMITKPKIWSQDNIGGYL-LDEFNELNKNNEIVRSNHYLKNQSRVSETQE-------TT 392
Query: 493 LDTLGSTKWRVNKQVLSVLESIWVSGGNIAGLVDRNDVLIPEKPLSEDMTEVQKWKWSVR 552
++ L S + +N+ +LS L W N ++ ++ + K
Sbjct: 393 VNYLNSIPFEINETMLSYLIEEWNK---------ENSIIFKNYNKLHHLSAYENDKLDSE 443
Query: 553 KAKKINQERHSQRCDTELKLSVARRMKDEEGFYYPHNLDFRGRAYPMHPHLNHLSSDVCR 612
+I Q +S + +++A MK+ Y P LDFRGR YP +LN+ SD+ R
Sbjct: 444 TKIEIIQ-HNSLYWNYSNIINIALLMKNN-TIYLPTFLDFRGRIYPTPNYLNYQGSDIAR 501
Query: 613 GVLEF---------------------AEGRPLGK-SGLRWLKIHLANLFSGGVEKLSHDG 650
+L F ++ L K + + ++K++L+N++ G+ KL+
Sbjct: 502 SLLLFKNVGNKVNYDSTVNEILESFISKELILNKLNDIDYVKLYLSNVY--GLNKLNRRN 559
Query: 651 RLAFVENHLYEIFDSAENPIN--GSRWWLTAEDPFQCLAACINLSEALKSSSPHSVISHL 708
R+ + ++++ +I D N I ++++ A++P Q ++ ++ +K
Sbjct: 560 RIRWFDDNIDDILDLLNNNIKEFNDKYFIKAKEPAQFISTLFEYNKFIKKEIKEI---KT 616
Query: 709 PIHQDGSCNGLQHYAALGRNTLEAAAVNLVAGEK--PADVYS----EIAVRVHEIMKRDS 762
PI D +C+G+QH +AL + VNL+ K P+D Y+ I + + + DS
Sbjct: 617 PILFDATCSGVQHLSALTTDLDICKLVNLIEATKDEPSDFYNFCIKNILNNIENLPETDS 676
Query: 763 NKDPSKHPQALLAKILIDQVD--RKLVKQTVMTSVYGVTFVGAREQIKRRLEEKGHITDD 820
L K I ++D RK++K ++MT Y VT +G ++I +K I+ D
Sbjct: 677 -----------LFKSKISKIDLSRKMLKHSIMTVPYNVTNIGIADKIAEYF-DKEFISKD 724
Query: 821 R 821
+
Sbjct: 725 K 725
>gi|291335799|gb|ADD95399.1| DNA directed RNA polymerase 2A [uncultured phage
MedDCM-OCT-S05-C849]
Length = 256
Score = 79.7 bits (195), Expect = 8e-12, Method: Compositional matrix adjust.
Identities = 65/236 (27%), Positives = 97/236 (41%), Gaps = 42/236 (17%)
Query: 708 LPIHQDGSCNGLQHYAALGRNTLEAAAVNLVAGEKPADVYSEIAVRVHEIMKRDSNKDPS 767
+P+ D +C+GLQ A L R+ AA VN++ +KP D Y IA +
Sbjct: 9 IPVATDATCSGLQILAGLARDKSTAAMVNVIPSDKPQDAYKVIAEKC------------- 55
Query: 768 KHPQALLAKILIDQV--------DRKLVKQTVMTSVYGVTFVGAREQIKRRLEEKGHITD 819
IDQ+ DRK K+T +T Y R+ IK L++K D
Sbjct: 56 -----------IDQIPERIRPYWDRKCTKRTCLTIPYNAKPFSNRQYIKDALKDKDIEVD 104
Query: 820 DRQLFAAACYAAKVTLTALGEIFEAARSIMGWLG-DCAKVIASENQPVRWTTPLGLPVVQ 878
+L K A+ IF +M W+ + A I + + W TP V Q
Sbjct: 105 KDEL----TQIVKAVRGAMETIFPGPMRVMRWIELEVANAIKDGAEQISWETPSFFRVTQ 160
Query: 879 PYCKNERHLIRTSL----QVLALQREGNLVKIRKQRTAFPPNFVHSLDGSHMMMTA 930
K + ++ L Q+ L E V +R + A PN +HSLD S + ++A
Sbjct: 161 RLMKYDHKIVELHLMGRCQIKVLDGEKG-VDLRHHKNATAPNLIHSLDASLLHLSA 215
>gi|224157115|ref|XP_002337803.1| predicted protein [Populus trichocarpa]
gi|222869831|gb|EEF06962.1| predicted protein [Populus trichocarpa]
Length = 109
Score = 76.6 bits (187), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 45/125 (36%), Positives = 72/125 (57%), Gaps = 18/125 (14%)
Query: 295 QEIRIHSFLEKTKNYKRKKIIADTEEVLSKEKELLRKRVNSLIKSKRVMEAQKLLKNEET 354
++IRIH+ LEKT+ K+K+ D++ + E + K +L K + +++
Sbjct: 2 KQIRIHNILEKTR--KKKEKANDSKNGVEGESPAVMKEQENLRKKAK----------DDS 49
Query: 355 KPWGRDTQAKLGSRLVELLIETAYVQHPVNPADYSPPDVRPAFRHRFKTILKHPGQKTTK 414
KPW D +AK+GSRL+ELL++TAY+Q P + SP + RPAF H F+T+
Sbjct: 50 KPWNADARAKVGSRLIELLLQTAYIQPPCDQLADSPSEPRPAFVHTFRTV------SYEN 103
Query: 415 RYGVV 419
+YGV+
Sbjct: 104 KYGVI 108
>gi|32455729|ref|NP_862328.1| hypothetical protein BrnaMpl_p6 [Brassica napus]
gi|23200585|dbj|BAC16369.1| orf6 [Brassica napus]
Length = 1078
Score = 75.1 bits (183), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 130/560 (23%), Positives = 221/560 (39%), Gaps = 109/560 (19%)
Query: 441 VPMLVPPKKWKGYNKGGYLFLPSYVMRTHG------SRKQQEALKSVTGNCMKKVF---- 490
+PM+ PP W K +P+Y+ G + + K +T + + +
Sbjct: 317 LPMISPPVDWYSIKKDNNPNVPTYMSDIKGGYLVGATGEFYNRFKLLTSKNIDRFYLSFR 376
Query: 491 -------EALDTLGSTKWRVNKQVLSVLESIWVSGGNIAGLVDR---NDVLIPEKPLSED 540
E L L K+ +NK +L ++ ++ N+ L+D+ N + L ++
Sbjct: 377 KDPSNMLEILSFLQRQKFLINKSMLKFIKDNRLALENVDLLIDQCLANINTLAAYELLDE 436
Query: 541 MTEVQKWKWSVRKAKKI-----NQERHSQRCDTELKLSVARRMKDEEGFYYPHNLDFRGR 595
M K +++ ++ N + QR E + + Y P LDFRGR
Sbjct: 437 MFYRTDLKTNIKGYFRLDELKENLNKRIQRARYEEFIFQLADAYADYPLYLPAFLDFRGR 496
Query: 596 AYPMHPHLNHLSSDVCRGVLEFAEGRPLGKSGLRWLK----IHLANLFS-----GGVEKL 646
Y GVL F E R L KS + + I+ N FS G+ L
Sbjct: 497 IYR-------------SGVLHFHE-RDLAKSLIIFSNSEKDINEINNFSENRIDSGIYNL 542
Query: 647 SHDGRLAFVENHLY-EIFDSAENPI-----NGSRWWLTAEDPFQCLAACINL----SEAL 696
+ + + Y E +D +N + N + A+DPFQ L+ + L SE
Sbjct: 543 AIATGFKYQKFSNYKESYDWIKNELIPNQSNILEFARNADDPFQFLSKALYLLYFISENE 602
Query: 697 KSSSPHS-----VISHLPIHQDGSCNGLQHYAALGRNTLEAAAVNLVAG--EKPADVYSE 749
K +S +S +++ +P+ QD S + Q + L N N++ G +K D+YS
Sbjct: 603 KGTSFYSSDLRYLLNEIPVSQDASASAYQIMSFLLLNEDLGKGTNMIYGSEDKIQDLYSS 662
Query: 750 IAVRVHEIMKRDSNKDPSKHPQALLAKILIDQVDRKLVKQTVMTSVYGVTFVGAREQIK- 808
+ + E + + K + +PQ + Q+DRK VK+ M +YG T + IK
Sbjct: 663 LKDELVEYLLK--TKCSNDYPQC--EDFVKTQIDRKFVKRLFMPLIYGKTIMSMTNDIKL 718
Query: 809 ---RRLEEKGH--ITDDRQLFAAACYAAKVTLTALGEIFEAARSIMGWLGDCAKVIASEN 863
R+L K + I +D F + V L L +++GW + N
Sbjct: 719 YSERKLPYKAYFKIANDCLEFWRMKFPDIVNLMKL-------LNLVGWFK------SQMN 765
Query: 864 QPVRWTTPLGLPVVQPYCKN-------------ERHLIRTSLQVLALQREGNLVKIRKQR 910
+PV + L Q Y K+ +RH R +L++ +R+ IRK +
Sbjct: 766 KPVLYGHML-FTTHQFYTKSVKTQISIYDRKTKKRH--RVTLKLPTPERD-----IRKSQ 817
Query: 911 TAFPPNFVHSLDGSHMMMTA 930
+ NF+H D M+
Sbjct: 818 VSTCVNFIHQRDACIAMLVV 837
>gi|426386380|ref|XP_004059663.1| PREDICTED: DNA-directed RNA polymerase, mitochondrial-like, partial
[Gorilla gorilla gorilla]
Length = 818
Score = 74.7 bits (182), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 66/276 (23%), Positives = 123/276 (44%), Gaps = 24/276 (8%)
Query: 249 PHIELLPADKVAVIVMHKMMGLVMAGHEDRCVQVVQAAVHIGMAIEQEIRIHSFLEKTKN 308
P + LL +V +++ + L G + +A + + Q R+ ++ +N
Sbjct: 535 PFLCLLDEREVVRMLLQVLQALPAQGESFTTLARELSARTFSLHVVQRQRVSGQVQALQN 594
Query: 309 YKRKKIIADTEEVLSKEKELLRKRVNSLIKSKRVMEAQKLLKNEETKPWGRDTQAKLGSR 368
+ RK + + E L R+ +L + + E +PW Q +LG
Sbjct: 595 HYRKYLCLLASDAEVPEPCLPRQYWEALGAPEALRE----------QPWPLPVQMELGKL 644
Query: 369 LVELLIETAYVQHPVNPADYSPPDVRPAFRHRFKTILKHPGQ-KTTKRYGVVECDPLVLE 427
L E+L++ Q P N D +P R +L H + ++ G+++ P ++
Sbjct: 645 LAEMLVQA--TQMPCN-LD------KPHRSSRLVPVLYHVYSFRNVQQIGILKPHPAYVQ 695
Query: 428 GLDRSAKHMLI---PYVPMLVPPKKWKGYNKGGYLFLPSYVMRT-HGSRKQQEALKSVTG 483
L+++A+ L VPML PP W + G +L P+ +MRT G+ + QE L++
Sbjct: 696 LLEKAAEPTLTFEAVDVPMLCPPLPWTSPHSGAFLLSPTKLMRTVEGATQHQELLETCPP 755
Query: 484 NCMKKVFEALDTLGSTKWRVNKQVLSVLESIWVSGG 519
+ +AL LG+ WRVN +VL ++ ++ + G
Sbjct: 756 TALHGALDALTQLGNCAWRVNGRVLDLVLQLFQAKG 791
>gi|297738417|emb|CBI27618.3| unnamed protein product [Vitis vinifera]
Length = 50
Score = 74.7 bits (182), Expect = 3e-10, Method: Composition-based stats.
Identities = 30/42 (71%), Positives = 38/42 (90%)
Query: 689 CINLSEALKSSSPHSVISHLPIHQDGSCNGLQHYAALGRNTL 730
CINLS+AL+SS P + ISH+P+HQDGSCNGLQH+AALGR+ +
Sbjct: 2 CINLSDALRSSPPKTTISHMPVHQDGSCNGLQHHAALGRDKV 43
>gi|2370356|emb|CAA72339.1| RNA polymerase [Pichia kluyveri]
Length = 992
Score = 72.8 bits (177), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 64/258 (24%), Positives = 117/258 (45%), Gaps = 23/258 (8%)
Query: 574 VARRMKDEEGFYYPHNLDFRGRAYPMHPHLNHLSSDVCRGVLEFAEGRPLGKSGLRWLKI 633
+A+ K+ Y+P +DFRGR Y +++ S+D + +L+F E + + +L +
Sbjct: 438 MAKSFKNVSKMYFPLRVDFRGRVYA-QSVISYQSTDTAKALLDFGEVYKVNMDDVEYLFM 496
Query: 634 HLANLFSGGVEKLSHDGRLAFVENHLYEIFDSAENPINGSRWWLTAEDPFQCLAACINLS 693
AN + G++K SH R+ +++ + +++ E + TA++ + C+
Sbjct: 497 SGANAY--GLDKKSHMERINWIKTNSVLMYNLDEELMR------TADNKLLFVKFCLEYR 548
Query: 694 ---EALKSSSPHSVISHLPIHQDGSCNGLQHYAALGRNTLEAAAVNLVAGEK---PADVY 747
+AL S + S+ ++ D +CNG QH A ++ L VNL K P D Y
Sbjct: 549 KYMDALNSQQKY-YYSNYMVYVDATCNGFQHMALTLKDPLTCYNVNLANTSKDMSPRDFY 607
Query: 748 SEIAVRVHEIMKRDSNKDPSKHPQALLAKILIDQVDRKLVKQTVMTSVYGVTFVGAREQI 807
+ I V + MK D N + + + L L RK++K VM Y + +
Sbjct: 608 TFIKDSVLDNMK-DMNMNKNNSVERTLEMGLT----RKMMKTMVMIMPYNAGVTTMTKYL 662
Query: 808 KRRLEEKG--HITDDRQL 823
+ L G + D++ L
Sbjct: 663 EDSLNYMGTYYTADEKDL 680
>gi|224072667|ref|XP_002335917.1| predicted protein [Populus trichocarpa]
gi|222836347|gb|EEE74754.1| predicted protein [Populus trichocarpa]
Length = 99
Score = 72.4 bits (176), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 37/93 (39%), Positives = 60/93 (64%), Gaps = 7/93 (7%)
Query: 328 LLRKRVNSLIKSKRVMEAQKLLKN-EETKPWGRDTQAKLGSRLVELLIETAYVQHPVNPA 386
L RK+V LIK +++ +K++K +++KPW D +AK+GSRL+ELL++TAY+Q P +
Sbjct: 12 LSRKKVTDLIKKQKLPAVRKIVKGKDDSKPWNADARAKVGSRLIELLLQTAYIQPPCDQL 71
Query: 387 DYSPPDVRPAFRHRFKTILKHPGQKTTKRYGVV 419
+ + RPAF H F+T+ +YGV+
Sbjct: 72 ADTSSEPRPAFVHTFRTV------SYENKYGVI 98
>gi|331244154|ref|XP_003334718.1| hypothetical protein PGTG_16325 [Puccinia graminis f. sp. tritici
CRL 75-36-700-3]
gi|309313708|gb|EFP90299.1| hypothetical protein PGTG_16325 [Puccinia graminis f. sp. tritici
CRL 75-36-700-3]
Length = 179
Score = 66.2 bits (160), Expect = 8e-08, Method: Composition-based stats.
Identities = 36/92 (39%), Positives = 54/92 (58%), Gaps = 4/92 (4%)
Query: 582 EGFYYPHNLDFRGRAYPMHPHLNHLSSDVCRGVLEFAEGRPLGKSGLRWLKIHLANLFSG 641
E FY L+ G+ P+ +LN + ++C G+L F E + LGK GL+WLKI+L+N +
Sbjct: 47 EKFY--KALEKLGQVVPIPENLNQIGDNICWGLLNFVEKKELGKDGLQWLKINLSNNY-- 102
Query: 642 GVEKLSHDGRLAFVENHLYEIFDSAENPINGS 673
G K S D F+E L + DSA+ P+ G+
Sbjct: 103 GNNKASLDDWAKFIEEQLELVIDSADQPLEGN 134
>gi|361129190|gb|EHL01103.1| putative DNA-directed RNA polymerase, mitochondrial [Glarea
lozoyensis 74030]
Length = 484
Score = 65.5 bits (158), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 57/227 (25%), Positives = 107/227 (47%), Gaps = 35/227 (15%)
Query: 292 AIEQEIRIHSFLEKTKNYKRKKIIADTEEVLSKEKELLRKR-VNSLIKSKRVMEAQKLLK 350
AIE E S LE+ K KR + + ++ + K++++ R SL K +++ +
Sbjct: 278 AIEDE----SVLERVKRQKRSPLTSRSQIGVYDLKKMVKNRGAGSLSKLLSATDSKHPMA 333
Query: 351 NEETK-----PWGRDTQAKLGSRLVELLIETAYVQHPVNPA--DYSPPDVRPAFRHRFKT 403
++ PW +AK+G+ ++ LI+ A + P+ + + +++PA H +K
Sbjct: 334 KRASQYSMELPWPTAVRAKVGAYVLSALIDIATMPVPIQNSVTKETMTEMQPALLHSYK- 392
Query: 404 ILKHPGQKTTKRYGVVECDPLVLEGLDRSAKHMLIPYVPMLVPPKKWKGYNKGGYLFLPS 463
KH ++YG++ + E L +S K + P W + +GGYL P+
Sbjct: 393 -YKH-----GRKYGIIMAN----EALTQSLK----------LEPDPWMSFAEGGYLIHPT 432
Query: 464 YVMRTHGSRKQQE--ALKSVTGNCMKKVFEALDTLGSTKWRVNKQVL 508
++R K Q A ++ + ++ E LD LG T+WR+N+ V
Sbjct: 433 KLIRVKSGNKDQRYYAEAAIAQGDLDRLREGLDVLGKTEWRINRPVF 479
>gi|15147309|ref|NP_150313.1| orf218 [Spizellomyces punctatus]
gi|15100078|gb|AAK84242.1|AF404303_16 orf218 [Spizellomyces punctatus]
Length = 218
Score = 63.5 bits (153), Expect = 5e-07, Method: Composition-based stats.
Identities = 52/173 (30%), Positives = 82/173 (47%), Gaps = 16/173 (9%)
Query: 582 EGFYYPHNLDFRGRAYPMHPHLNHLSSDVCRGVLEFAEGRPLGKSGLRWLKIHLANLFSG 641
E Y P D+RGR YP +N+ + + R VLEF G L +G+ I+ AN +
Sbjct: 20 EPIYLPVFGDWRGRVYPHSTFINYQGNSLSRNVLEFYHGEVLNSNGIFSFFIYGANTY-- 77
Query: 642 GVEKLSHDGRLAFVENHLYEIFDSAENPINGSRWWLTAEDPFQCLA--ACINLSEALKSS 699
G++KL+ D R +V D++ ++ R +L D A A +
Sbjct: 78 GLDKLTFDERYQWV-------IDNSAKILSMDRDFLLGADDQLAFASFALYYRKWYINPD 130
Query: 700 SPHSVISHLPIHQDGSCNGLQHYAALGRNTLEAAAVNLVAGEKPA-DVYSEIA 751
P +VI ++QD +C+GLQH ++L + A VN A DVY+++A
Sbjct: 131 EPLNVI----VYQDATCSGLQHISSLLADINLAKQVNTAGPSAIAGDVYTDVA 179
>gi|452849733|ref|YP_007475378.1| hypothetical protein (mitochondrion) [Microbotryum
lychnidis-dioicae]
gi|452849745|ref|YP_007475390.1| hypothetical protein (mitochondrion) [Microbotryum
lychnidis-dioicae]
gi|445067451|gb|AGE14592.1| hypothetical protein (mitochondrion) [Microbotryum
lychnidis-dioicae]
gi|445067463|gb|AGE14604.1| hypothetical protein (mitochondrion) [Microbotryum
lychnidis-dioicae]
Length = 266
Score = 61.6 bits (148), Expect = 2e-06, Method: Composition-based stats.
Identities = 69/257 (26%), Positives = 112/257 (43%), Gaps = 43/257 (16%)
Query: 441 VPMLVPPKKWKGYNKGGYLFLP-------SYVMRTHGS-RKQQEALKSVTGNCMKKVFEA 492
+PM+ P+ G+ +++ P Y H R + + +K G + + +
Sbjct: 31 LPMVCEPRS-PGFEHNKFIYGPYVTDDANQYCDPFHSILRSKHDLMKMPEGQ--EILSDC 87
Query: 493 LDTLGSTKWRVNKQVLSVLESIWVSGGNIAGLVDRNDVLIPE--KPLSEDMTEVQKWKWS 550
++ L K ++++VL L S W SG R+D L E KP+ D
Sbjct: 88 VNYLNRQKLVIHEEVLDFLISEWESG--------RSDTLFKEYIKPMPSDNGN------D 133
Query: 551 VRKAKKINQERHSQRCDTELKLSVARRMKDEEGFYYPHNLDFRGRAYPMHPHLNHLSSDV 610
K I+ S LS+A + FY P DFRGR Y L++ D+
Sbjct: 134 AIKHNAIHYRYQS-------ILSLASNFRKLPYFYLPVFGDFRGRLYTFCSLLSYQGQDL 186
Query: 611 CRGVLEF-AEGRPLGKSGLRWLKIHLANLFSGGVEKLSHDGRLAFVENHLYEIFDSAENP 669
RG++ F E + GL ++ ++AN F G +KLSHD +++F E+ + E D EN
Sbjct: 187 SRGLIGFYNESEEINSEGLCYVYHYMANTF--GNDKLSHDNKVSFSESIIKECLDLYEN- 243
Query: 670 INGSRW---WLT-AEDP 682
+ +W WL A +P
Sbjct: 244 -DKEKWKNLWLNKAAEP 259
>gi|94502567|ref|YP_588388.1| hypothetical protein ZeamMp138 [Zea mays subsp. mays]
gi|40795006|gb|AAR91050.1| hypothetical protein (mitochondrion) [Zea mays]
gi|414871177|tpg|DAA49734.1| TPA: DNA-directed RNA polymerase [Zea mays]
Length = 417
Score = 61.2 bits (147), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 92/415 (22%), Positives = 170/415 (40%), Gaps = 65/415 (15%)
Query: 492 ALDTLGSTKWRVNKQVLSVL---ESIWVSGG----NIAGLVDRNDVLIPEKPLSEDMTEV 544
++ L S +++N ++L L + I+ + G +I +DR + + K + E+
Sbjct: 13 VINKLQSVPYQINTKLLCHLVKCKDIYHASGLLMPSILASIDRTEGTVRLKHHYLNDKEM 72
Query: 545 QKWKWSVRKAKKINQERHSQRCDTELKLSVARRMKDEEGFYYPHNLDFRGRAY---PMHP 601
+K+ +S++ I + C + L +A +++ Y+P LDFRGR Y P H
Sbjct: 73 KKY-FSLKDLINIWIKNIQSACYEQYILKLADALQNY-NLYFPTFLDFRGRNYRYGPFHY 130
Query: 602 HLNHLSSDVCRGVLEFAEGRPL------GKSGLRWLKIHLANLFSGGVEKLSHDGRLAFV 655
H D+ R ++ FA+ G G+R A +S K ++G + F+
Sbjct: 131 H----ERDLVRSLILFAQSGVTDTPPDKGSQGIRTFMASTAFHYS-KYWKNYNEGIIWFI 185
Query: 656 ENHLYEIFDSAENP--------INGSRWWLTAEDPFQCLAACINLSEALKSSSPHSVISH 707
+N ++E D N N +R A PFQ L++ I L + I+
Sbjct: 186 KN-IHECPDLNSNKADIVLDRLANLAR---KARHPFQFLSSVITL-----KNRDSDKIAR 236
Query: 708 LPIHQDGSCNGLQHYAALGRNTLEAAAVNLVAGEKPADVYSEIAVRVHEIMKRDSNKD-P 766
PIH D S + Q + L N A NL++ + ++EI+ D K
Sbjct: 237 TPIHLDASASAYQMLSYLLGNITMARNTNLISENNKIN-------NIYEIIDSDFKKYIE 289
Query: 767 SKHPQALLAKILIDQVDRKLVKQTVMTSVYGVTFVGAREQIKRRLEEKGHI-----TDDR 821
K+ + ++ + + DR ++K M VYG + + ++ G I +D
Sbjct: 290 RKYGEHIITRYVCSLFDRDIIKNIFMPIVYG------KSKFSTAIDLLGKIGSYMVVEDL 343
Query: 822 QLFAAACYAAKVTLTALGEIFEAARSIMGWLGDCAKVIASENQPVRWTTPLGLPV 876
+ CY ++ R++M + + V N+PV ++T + V
Sbjct: 344 KTIIKECY------NFWESEYKDMRNLMHLVASISWVSGFINKPVIYSTEYWITV 392
>gi|71409787|ref|XP_807220.1| mitochondrial DNA-directed RNA polymerase [Trypanosoma cruzi strain
CL Brener]
gi|70871174|gb|EAN85369.1| mitochondrial DNA-directed RNA polymerase, putative [Trypanosoma
cruzi]
Length = 199
Score = 60.8 bits (146), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 40/118 (33%), Positives = 57/118 (48%), Gaps = 7/118 (5%)
Query: 827 ACYAAKVTLTALGEIFEAARSIMGWLGDCAKVIASENQPVR------WTTPLGLPVVQPY 880
A Y + L +LG F ++ W+ + +I E QP WTTPLGL V QPY
Sbjct: 2 ADYLREKVLESLGISFRETQNCRRWITEVTNMIW-EAQPAELRTALCWTTPLGLVVRQPY 60
Query: 881 CKNERHLIRTSLQVLALQREGNLVKIRKQRTAFPPNFVHSLDGSHMMMTAVACRDAGL 938
+ + T + + RKQ TA PN +HSLD +H+ MTA+ ++ GL
Sbjct: 61 KVRKEITLFTPHGCSRIPGDAFSAASRKQLTAIAPNLIHSLDATHLAMTAIEMQNLGL 118
>gi|4206729|gb|AAD11787.1| RNA polymerase [Agaricus crocodilinus]
Length = 246
Score = 60.8 bits (146), Expect = 4e-06, Method: Composition-based stats.
Identities = 58/228 (25%), Positives = 102/228 (44%), Gaps = 25/228 (10%)
Query: 681 DPFQCLAACINLSEALKSSSPHSVISHLPIHQDGSCNGLQHYAALGRNTLEAAAVNLVA- 739
+PFQ ++ I ++ L S+P + IS+ PI D SC+G+QH AAL A+ VNL
Sbjct: 9 EPFQFIS--IMYAKLLSMSNPKANISN-PILFDASCSGIQHIAALTLEKELASNVNLYTD 65
Query: 740 GEKPADVYSEIAVRVHEIMKRDSNKDPSKHPQALLAKILIDQVDRKLVKQTVMTSVYGVT 799
KP D Y + + K +K Q+ ++++ Q++RK++K++VMT Y ++
Sbjct: 66 SSKPKDEYPQ------DFYMYALGKIRAKLIQSEISELRDIQLNRKIIKRSVMTIPYNIS 119
Query: 800 FVGAREQIKRRLEEKGHI--------------TDDRQL-FAAACYAAKVTLTALGEIFEA 844
G E + K + + D L F+ K+ L + +
Sbjct: 120 MSGIGEHLMEHFVVKTVLKYRYVVIPGSATISSKDVYLDFSKYGQLCKIIYFVLTKELPS 179
Query: 845 ARSIMGWLGDCAKVIASENQPVRWTTPLGLPVVQPYCKNERHLIRTSL 892
R + + + + N P+ W TP GL + K + ++TS+
Sbjct: 180 LRILSNYFENMIDIFVKLNIPITWVTPSGLKIKYTNIKFKTQKVKTSV 227
>gi|195159574|ref|XP_002020653.1| GL15084 [Drosophila persimilis]
gi|194117603|gb|EDW39646.1| GL15084 [Drosophila persimilis]
Length = 1427
Score = 60.8 bits (146), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 47/175 (26%), Positives = 84/175 (48%), Gaps = 18/175 (10%)
Query: 356 PWGRDTQAKLGSRLVELL-----IETAYVQHPVNPADYSPPDVRPAFRHRFKTILKHPGQ 410
PW + A +G L +L I+ ++ S ++ PAF T+ ++ G+
Sbjct: 682 PWPSNVLAGVGRFLYNILMRDIKIDPHIMRQKSKSKTTSSQNLLPAFY----TLFRNQGR 737
Query: 411 KTTKRYGVVECDPLVLEGLDRSAKHMLIPY----VPMLVPPKKWKGYNKGGYLFLPSYVM 466
+ V+ P VL L R ++ + + VPML PP+ W + GGYL S ++
Sbjct: 738 LVKEE---VKPHP-VLSRLLRGSRQQTLTFDSNLVPMLCPPQPWSTPHNGGYLLNKSELI 793
Query: 467 RT-HGSRKQQEALKSVTGNCMKKVFEALDTLGSTKWRVNKQVLSVLESIWVSGGN 520
R H + +Q E +++ + ++L+ L S WRVN Q+L V+ ++ +GG+
Sbjct: 794 RLPHQAIQQWERIRASNPQHLYPALDSLNQLASVPWRVNTQLLDVIIEVFQNGGD 848
>gi|413947445|gb|AFW80094.1| hypothetical protein ZEAMMB73_281983 [Zea mays]
Length = 277
Score = 59.7 bits (143), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 33/73 (45%), Positives = 47/73 (64%), Gaps = 5/73 (6%)
Query: 385 PADYSPPDVRPAFRHRF-KTILKHPGQKTTKRYGVVECDPLVLEGLDRSAKHMLIPYVPM 443
PAD +P P F+H K I+++ + K++ V+ D LV EG + +A+H+ IPY+PM
Sbjct: 183 PADQTPDSSPPTFKHVLCKPIIEN--GRLKKKHWVI--DHLVHEGFESTARHVDIPYLPM 238
Query: 444 LVPPKKWKGYNKG 456
LVPPKKWKG G
Sbjct: 239 LVPPKKWKGVLHG 251
>gi|238566639|ref|XP_002386099.1| hypothetical protein MPER_15811 [Moniliophthora perniciosa FA553]
gi|215437037|gb|EEB87029.1| hypothetical protein MPER_15811 [Moniliophthora perniciosa FA553]
Length = 49
Score = 58.9 bits (141), Expect = 1e-05, Method: Composition-based stats.
Identities = 27/50 (54%), Positives = 36/50 (72%), Gaps = 2/50 (4%)
Query: 621 RPLGKSGLRWLKIHLANLFSGGVEKLSHDGRLAFVENHLYEIFDSAENPI 670
+PLG GLRWLKIHLANL+ G +K S R+ +++ L +IFDSA NP+
Sbjct: 1 KPLGARGLRWLKIHLANLY--GYDKASFSERVEYIDARLEQIFDSATNPL 48
>gi|424586419|ref|ZP_18026000.1| DNA-dependent RNA polymerase family protein [Vibrio cholerae
CP1030(3)]
gi|424598986|ref|ZP_18038169.1| DNA-dependent RNA polymerase family protein [Vibrio Cholerae
CP1044(17)]
gi|395974773|gb|EJH84289.1| DNA-dependent RNA polymerase family protein [Vibrio cholerae
CP1030(3)]
gi|408042983|gb|EKG79011.1| DNA-dependent RNA polymerase family protein [Vibrio Cholerae
CP1044(17)]
Length = 368
Score = 58.5 bits (140), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 50/181 (27%), Positives = 79/181 (43%), Gaps = 25/181 (13%)
Query: 784 RKLVKQTVMTSVYGVTFVGAREQI---------KRRLEEKGHITDDRQLF---------- 824
R +K+ MT YG G R+Q+ + +E G D L
Sbjct: 110 RNWLKRNTMTFFYGSAQFGMRDQLIVDHLEPEFNKVIEVVGKDGDPTSLGFPWATLKDAK 169
Query: 825 AAACYAAKVTLTALGEIFEAARSIMGWLGDCAKVIASENQPVRWTTPLGLPVVQPYCKNE 884
AA A + A+ ++ E +M L A++IA + +RWTTPLGL V Q Y K E
Sbjct: 170 DAATVAGNINYEAICKMAERPARVMQSLQRYAELIAKSGRKMRWTTPLGLIVEQRYEKVE 229
Query: 885 RHLIRTSLQ-----VLALQREGNLVKIRKQRTAFPPNFVHSLDGSHMM-MTAVACRDAGL 938
+ + + + QR V Q+ PN+VHSLD S ++ + ++ ++ GL
Sbjct: 230 KFKVDSMITGQKRIQTTSQRHTGEVDANGQKNGAAPNWVHSLDASLLLKVLSLGSKNHGL 289
Query: 939 H 939
+
Sbjct: 290 N 290
>gi|345496230|ref|XP_001601060.2| PREDICTED: hypothetical protein LOC100116609 [Nasonia vitripennis]
Length = 570
Score = 56.6 bits (135), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 27/59 (45%), Positives = 38/59 (64%), Gaps = 6/59 (10%)
Query: 885 RHLIRTSLQVLALQREGNLVKIRKQRTAFPPNFVHSLDGSHMMMTAVACRDAGLHFAGL 943
R+LI ++ L R+ N + KQ+ AF PNFVHSLD SHMM+T++ C AG+ F +
Sbjct: 427 RNLINI---LIFLNRKPN---VMKQKNAFAPNFVHSLDSSHMMLTSIHCERAGITFVSV 479
>gi|10092337|gb|AAG12747.1|AC066690_1 mitochondrial single-subunit DNA-dependent RNA polymerase,
putative; 6999-7354 [Arabidopsis thaliana]
Length = 75
Score = 56.2 bits (134), Expect = 7e-05, Method: Composition-based stats.
Identities = 28/55 (50%), Positives = 35/55 (63%), Gaps = 2/55 (3%)
Query: 809 RRLEEKGHIT--DDRQLFAAACYAAKVTLTALGEIFEAARSIMGWLGDCAKVIAS 861
R + K H T DD F A+CY AK+TL AL +FEAAR+I W G+CA+ I S
Sbjct: 7 RCCQPKEHDTFEDDSLTFHASCYVAKITLKALEGMFEAARAIKSWFGNCARAIKS 61
>gi|387941764|gb|AFK13346.1| RNA polymerase [Yersinia phage YpP-Y]
Length = 234
Score = 55.8 bits (133), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 43/124 (34%), Positives = 55/124 (44%), Gaps = 18/124 (14%)
Query: 826 AACYAAKVTLTALGEIFEAARSIMGWLGDCAKVIASENQ------------PVRWTTPLG 873
AA Y AK+ A+ AA M WL AK++A+E + V W TP G
Sbjct: 24 AAGYMAKLIWEAVSVTVVAAVEAMNWLKSAAKLLAAEVKDKKTGEILRKRCAVHWVTPDG 83
Query: 874 LPVVQPYCK------NERHLIRTSLQVLALQREGNLVKIRKQRTAFPPNFVHSLDGSHMM 927
PV Q Y K N L + LQ + + + KQ + PNFVHS DGSH+
Sbjct: 84 FPVWQEYKKPIQTRLNLMFLGQFRLQPTINTNKDSEIDAHKQESGIAPNFVHSQDGSHLR 143
Query: 928 MTAV 931
T V
Sbjct: 144 KTVV 147
>gi|188032261|emb|CAQ52964.1| unnamed protein product [Lolium perenne]
Length = 1284
Score = 55.8 bits (133), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 78/379 (20%), Positives = 139/379 (36%), Gaps = 68/379 (17%)
Query: 584 FYYPHNLDFRGRAY---PMHPHLNHLSSDVCRGVLEFAEGRPLGKSGLRWLKIHLANLFS 640
FY P LDFRGR Y H H D R + FA P + ++ + +
Sbjct: 696 FYLPLFLDFRGRNYRRGVFHLH----ERDFMRSLFLFAT--PNNR-----IQAKMNDFTK 744
Query: 641 GGVEKLSHDGRLAFVENHLYEIFDSAENPINGSRWWLT---------------------- 678
E+L+ D F + + P + + W+ T
Sbjct: 745 KEEEELTQDQLDCFYAATSFHFHKWMDYP-SATEWFRTKLEKWDKGKPLSNENFTEDTDI 803
Query: 679 ------AEDPFQCLAACINLSEALKSSSPHSVISHLPIHQDGSCNGLQHYAALGRNTLEA 732
A+ PFQ LA C A ++ ++ + H+PI QD S + Q + +
Sbjct: 804 LSLLNQAKSPFQFLAGC----HAARTKDTYT-MKHIPITQDASASAYQILSFFFLDLRMG 858
Query: 733 AAVNLVAGEKPADVYSEIAVRVHEIMKRDSNKDPSKHPQALLAKILIDQV-DRKLVKQTV 791
NL+ + D+Y + +H+ ++ + P + + A +I+ V DRK++K
Sbjct: 859 MHTNLIGSNEINDIYDCL---LHQ-LRCYTTTIPIQENVDMHALNIINTVFDRKIMKNIY 914
Query: 792 MTSVYGVTFVGAREQIKRRLEEKGHITDDRQLFAAACYAAKVTLTALGEIFEAARSIMGW 851
M +YG T R+ +++ GH D +A ++ ++ ++M
Sbjct: 915 MPIIYGKTKNSTRDDFIKKI---GHNRD----YATINKLVEICFQFWDHYYKDVNNLMEL 967
Query: 852 LGDCAKVIASENQPVRWTTPLGLPVVQPYCKNERHLIRTSLQVLALQREGNLVKI----- 906
+ + + + + L +Q YCK + +I +R G VK
Sbjct: 968 IQSVCMITTKLDSNIIYGNNL-FKTIQNYCKTKEQIISVIYDSTRRKRSGVTVKENTDIK 1026
Query: 907 --RKQRTAFPPNFVHSLDG 923
RK + NF+H D
Sbjct: 1027 DPRKTVISTFANFIHQRDA 1045
>gi|188032269|emb|CAQ52970.1| unnamed protein product [Lolium perenne]
Length = 1272
Score = 55.5 bits (132), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 78/379 (20%), Positives = 140/379 (36%), Gaps = 68/379 (17%)
Query: 584 FYYPHNLDFRGRAY---PMHPHLNHLSSDVCRGVLEFAEGRPLGKSGLRWLKIHLANLFS 640
FY P LDFRGR Y H H D R + FA P + ++ + +
Sbjct: 684 FYLPLFLDFRGRNYRRGVFHLH----ERDFMRSLFLFAT--PNNR-----IQAKMNDFTK 732
Query: 641 GGVEKLSHDGRLAFVENHLYEIFDSAENPINGSRWWLT---------------------- 678
E+L+ D F + + + P + + W+ T
Sbjct: 733 KEEEELTQDQLDCFYAATSFHLHKWKDYP-SATEWFRTKLEKWDKGKPLSNKNFTEDTDI 791
Query: 679 ------AEDPFQCLAACINLSEALKSSSPHSVISHLPIHQDGSCNGLQHYAALGRNTLEA 732
A+ PFQ LA C A ++ ++ + H+PI QD S + Q + +
Sbjct: 792 LSLLNQAKSPFQFLAGC----HAARTKDTYT-MKHIPITQDASASAYQILSFFFLDLRMG 846
Query: 733 AAVNLVAGEKPADVYSEIAVRVHEIMKRDSNKDPSKHPQALLAKILIDQV-DRKLVKQTV 791
NL+ + D+Y + +H+ ++ + P + + A +I+ V DRK++K
Sbjct: 847 MHTNLIGSNEINDIYDCL---LHQ-LRCYTTTIPIQANVDMHALNIINTVFDRKIMKNIY 902
Query: 792 MTSVYGVTFVGAREQIKRRLEEKGHITDDRQLFAAACYAAKVTLTALGEIFEAARSIMGW 851
M +YG T R+ +++ GH D +A ++ ++ ++M
Sbjct: 903 MPIIYGKTKKSTRDDFIKKI---GHNRD----YATINKLVEICFQFWDHYYKDVNNLMEL 955
Query: 852 LGDCAKVIASENQPVRWTTPLGLPVVQPYCKNERHLIRTSLQVLALQREGNLVKI----- 906
+ + + + + L +Q YCK + +I +R G VK
Sbjct: 956 IQSVCMITTKLDSNIIYGNNL-FKTIQNYCKTKEQIISVIYDSTRRKRSGVTVKENTDIK 1014
Query: 907 --RKQRTAFPPNFVHSLDG 923
RK + NF+H D
Sbjct: 1015 DPRKTVISTFANFIHQRDA 1033
>gi|242092660|ref|XP_002436820.1| hypothetical protein SORBIDRAFT_10g009430 [Sorghum bicolor]
gi|241915043|gb|EER88187.1| hypothetical protein SORBIDRAFT_10g009430 [Sorghum bicolor]
Length = 115
Score = 54.7 bits (130), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 37/79 (46%), Positives = 51/79 (64%), Gaps = 2/79 (2%)
Query: 178 LRRRQVKQETEAWERMVDEYKELEAKMIEKRLAPNLPHIKGLFLGWFGPLSEAIEREQKM 237
LR RQVK ETEAWER +EY+E+E + +++RLA L K LF+GWF L E I ++ +
Sbjct: 16 LRLRQVKAETEAWERTDEEYREIEREKLDRRLALALLCDKSLFVGWFESLWETITCDRHV 75
Query: 238 QRTKKQKAAYAPHIELLPA 256
QR K+ K Y + +PA
Sbjct: 76 QRWKRVKHVYG--LRQVPA 92
>gi|313244254|emb|CBY15078.1| unnamed protein product [Oikopleura dioica]
Length = 808
Score = 54.7 bits (130), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 44/197 (22%), Positives = 82/197 (41%), Gaps = 13/197 (6%)
Query: 441 VPMLVPPKKWKGYN---KGGYLFLPSYVMRTHGSR-------KQQEALKSVTGNCMKKVF 490
+PML PP+ +K ++ KG +L P +++ R ++ + + +
Sbjct: 601 MPMLCPPRPYKIFDNQIKGQFLTSPRLLVKKKKMRNPKPFHIEESPGWRQYPKEKINHML 660
Query: 491 EALDTLGSTKWRVNKQVLSVLESIWVSGGNIA---GLVDRNDVLIPEKPLSEDMTEVQKW 547
A + + W +NK+++ VLE + GG + D D+ K + T +
Sbjct: 661 TACNAISQQSWSINKEIVKVLEEVTKEGGMYTLKIPMRDCWDISHGIKSIVTTSTSDPLY 720
Query: 548 KWSVRKAKKINQERHSQRCDTELKLSVARRMKDEEGFYYPHNLDFRGRAYPMHPHLNHLS 607
+ ++ E + L + + + F+ P +LD+RGR YP +N LS
Sbjct: 721 NRHKQVETRLRVEEKGLYVTFQSHLGLVKYFSQFDEFWLPLDLDYRGRIYPTTAIMNPLS 780
Query: 608 SDVCRGVLEFAEGRPLG 624
SD R F + + LG
Sbjct: 781 SDPYRASFLFGKAKKLG 797
>gi|195562312|ref|XP_002077502.1| GD13252 [Drosophila simulans]
gi|194202617|gb|EDX16193.1| GD13252 [Drosophila simulans]
Length = 151
Score = 53.9 bits (128), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 21/39 (53%), Positives = 28/39 (71%)
Query: 905 KIRKQRTAFPPNFVHSLDGSHMMMTAVACRDAGLHFAGL 943
I KQ+ AFPPNF+HSLD SHMM+T++ C G+ F +
Sbjct: 24 NILKQKNAFPPNFIHSLDSSHMMLTSLHCERQGITFVSV 62
>gi|42411057|gb|AAS15052.1| DNA-directed RNA polymerase [Daucus carota]
Length = 999
Score = 53.5 bits (127), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 88/391 (22%), Positives = 155/391 (39%), Gaps = 80/391 (20%)
Query: 570 LKLSVARRMKDEEG--FYYPHNLDFRGRAYPMHPHLNHLSSDVCRGVLEFAEGRPLGKSG 627
LKL++A EG FY P LDFRGR Y G+L F E R L +S
Sbjct: 497 LKLAIAY-----EGYHFYLPAFLDFRGRIYR-------------SGILHFHE-RDLARSL 537
Query: 628 LRWLKIHLANLFSGGVEKLSHDGRLAF--VENHLYEIFDSAENPI------NGS------ 673
+ +F+ ++S ++F +HLY FD+ ++ + G+
Sbjct: 538 V---------IFAKEDSQVSSSIPISFYCAASHLYRSFDNNDDAVEWFEEAKGTFEEAPN 588
Query: 674 ----RWWLTAEDPFQCLAACINLSEALKSSSPHSVISHLPIHQDGSCNGLQHYAALGRNT 729
++ A+ P Q L +C+ + + ++ I+ PI QD S + Q + +
Sbjct: 589 DLLIKFACDAKKPLQFL-SCVVVFKEYSTTQDLQAITSYPITQDASASAYQLMSYFLLDK 647
Query: 730 LEAAAVNLVAGEKPADVYSEIAVRVHEIMKRDSNKDPSKHPQALLAKILIDQVDRKLVKQ 789
A NL+ +++ + + E+ ++ D K+ +L + D + RK+VK
Sbjct: 648 DLAKNTNLIQRPGDSNIQDIYSYLLKEVQVYINDNDKYKNDSLILT--VSDNLTRKIVKG 705
Query: 790 TVMTSVYGVTFVGAREQIKRRLEEKGHITDDRQLFAAACYAA--KVTLTALGEIFEAARS 847
M +YG T + ++ E RQ A + KV + L + ++
Sbjct: 706 IFMPMIYGKTLMSTGIFLQ---ESFSFDLGKRQNAVAQVFYDFFKVKYSRLNCLMNMIQN 762
Query: 848 IMGWLGDCAKVIASENQPVRWTTPLGLPVVQPYCK-NERHLI----------RTSLQVLA 896
I GW + PV + PL +Q Y K +E H+ + +L + +
Sbjct: 763 I-GWFS------SERGNPVCYKVPL-FTTIQDYRKSSETHIWVYSKSTHSRKKVTLSIPS 814
Query: 897 LQREGNLVKIRKQRTAFPPNFVHSLDGSHMM 927
+R+ RK ++ NF+H D M
Sbjct: 815 EERDS-----RKTLSSTFVNFIHQKDACLAM 840
>gi|188032265|emb|CAQ52967.1| unnamed protein product [Lolium perenne]
Length = 1272
Score = 52.4 bits (124), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 52/253 (20%), Positives = 98/253 (38%), Gaps = 25/253 (9%)
Query: 679 AEDPFQCLAACINLSEALKSSSPHSVISHLPIHQDGSCNGLQHYAALGRNTLEAAAVNLV 738
A+ PFQ LA C +A ++ ++ + H+PI QD S + Q + + NL+
Sbjct: 798 AKSPFQFLAGC----QAARTKDTYT-MKHIPITQDASASAYQILSFFFLDLRMGMHTNLI 852
Query: 739 AGEKPADVYSEIAVRVHEIMKRDSNKDP-SKHPQALLAKILIDQVDRKLVKQTVMTSVYG 797
+ D+Y + ++ N++ KH ++ + DRK++K M +YG
Sbjct: 853 GSNEINDIYDCLLHQLRYYSTTIPNQENVDKHALNIINTVF----DRKIMKNIYMPIIYG 908
Query: 798 VTFVGAREQIKRRLEEKGHITDDRQLFAAACYAAKVTLTALGEIFEAARSIMGWLGDCAK 857
T R+ +++ GH DR + A ++ + ++M +
Sbjct: 909 KTKKSTRDDFIKKI---GH---DRDI-ATINKLVEICFQFWDHYYNDVNNLMELIQSVCM 961
Query: 858 VIASENQPVRWTTPLGLPVVQPYCKNERHLIRTSLQVLALQREGNLVKI-------RKQR 910
+ + + + +Q YCK + +I +R G VK RK
Sbjct: 962 ITTKLDSNIIYGNN-WFKTIQNYCKTKEQIISVIYDSTRKKRSGVTVKENTDIKDPRKTV 1020
Query: 911 TAFPPNFVHSLDG 923
+ NF+H D
Sbjct: 1021 ISTFANFIHQRDA 1033
>gi|4206723|gb|AAD11785.1| RNA polymerase [Agaricus bitorquis]
Length = 246
Score = 52.4 bits (124), Expect = 0.001, Method: Composition-based stats.
Identities = 53/236 (22%), Positives = 97/236 (41%), Gaps = 41/236 (17%)
Query: 681 DPFQCLAACINLSEALKSSSPHSVISHLPIHQDGSCNGLQHYAALGRNTLEAAAVNLVAG 740
+PFQ ++ I ++ L S+P + IS+ PI D SC+G+QH AAL A+ VNL
Sbjct: 9 EPFQFIS--IMYAKLLSISNPKANISN-PILFDASCSGIQHIAALTLEKELASNVNLYTD 65
Query: 741 ------EKPADVYSEIAVRVHEIMKRDSNKDPSKHPQALLAKILIDQVDRKLVKQTVMTS 794
+ P D Y+ ++ + K + + ++ +++RK++K++VMT
Sbjct: 66 SSNPKEDYPQDFYTYALEKIRD-----------KLINSEITELRDIKLNRKIIKRSVMTI 114
Query: 795 VYGVTFVGAREQIKRRLEEK------------------GHITDDRQLFAAACYAAKVTLT 836
Y ++ G E + K + D + C K+
Sbjct: 115 PYNISMAGIGEHLMEHFTVKTVLKYRYVVIPGSATISSKDVYLDYSKYGQLC---KIIYF 171
Query: 837 ALGEIFEAARSIMGWLGDCAKVIASENQPVRWTTPLGLPVVQPYCKNERHLIRTSL 892
L + + R + + + N P+ W TP GL + K + ++TS+
Sbjct: 172 VLTKELPSLRLLSNYFESMIDIFVKLNIPITWVTPSGLKIKYTNIKFKPQKVKTSV 227
>gi|372450210|ref|YP_005090363.1| DNA-dependent RNA polymerase (mitochondrion) [Phoenix dactylifera]
gi|343478415|gb|AEM43903.1| DNA-dependent RNA polymerase (mitochondrion) [Phoenix dactylifera]
Length = 875
Score = 52.0 bits (123), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 118/534 (22%), Positives = 212/534 (39%), Gaps = 93/534 (17%)
Query: 441 VPMLVPPKKWKGYNK---------GGYLFLPSYVM----RTHGSRKQQEALKSVTGNCMK 487
+PM+ P W + GGYL P+ + R SR ++ + K
Sbjct: 203 LPMVCNPLPWNSTEESPTMLTDLSGGYLSGPTLDIYNRFRILTSRDLSHFYVTLKYSGYK 262
Query: 488 KVFEALDTLGSTKWRVNKQVLSVLESIWVSGGNIAGLVDRNDVLIPEKPLSEDMTEVQKW 547
++ L++L S + +N +VL + + L+ RN + K S+ +
Sbjct: 263 RMCTILNSLQSQVFEINNKVLEFILQNRNRLVELGLLMPRNLAYVNLKEASDLLRFSYFS 322
Query: 548 KWSVRKA-----------KKINQERHSQRCDTELKLSVARRMKDEEGFYYPHNLDFRGRA 596
V+ A K++ + R+ + ++L+ A D F P +DFRGR
Sbjct: 323 DKGVQNACSCHVLIKELVKRVQRARYEEFV---IRLASAY---DGYQFDLPAFMDFRGRI 376
Query: 597 Y---PMHPHLNHLSSDVCRGVLEFAEGRP--LGKSGLRWLKIHLANLFSGGVEKLSH-DG 650
Y +H H D+ R ++ FA G+P L + + LA + +K + D
Sbjct: 377 YRSGVLHFH----ERDLSRSLIVFA-GQPKALNSQLAKTISQDLACAAAFKYKKFFNLDD 431
Query: 651 RLAFVENHLYEIFDSAENPINGSRWWLTAEDPFQCLAACINLSEALKSSSPHSVISHLPI 710
+ H + S E+ + ++ + A DPFQ LA LS+ + S+ H V P+
Sbjct: 432 AFKWYNEHQSLMLASDESLM---KFAVQASDPFQFLAKI--LSKDIVSNY-HKV----PV 481
Query: 711 HQDGSCNGLQHYAALGRNTLEAAAVNLV--AGEKPADVYSEIAVRVHEIM--KRDSNKDP 766
QD S + Q + L N NL+ + + DVY + + + + + D+NK
Sbjct: 482 TQDASASAYQIMSYLLLNQEMGRRTNLLPSSDGQIQDVYMCLQEELKKFLVTRLDANK-- 539
Query: 767 SKHPQALLAKILIDQVDRKLVKQTVMTSVYGVTFVGAREQIKRRLEEKGHITDDRQLFAA 826
+++ + RKLVK M +YG T + I ++ G + + +
Sbjct: 540 --------YAVILSMLTRKLVKGLFMPLIYGKTVSSMAKDI---MDHYGSLLSHKDSYGL 588
Query: 827 ACYAAKVTLTALGEIFEAAR--SIMGWLGDCAKVIASENQPVRWTTPLGLPVVQPYCKNE 884
A + +I +++GW C+K+ ++PV ++ P + VQ Y +++
Sbjct: 589 AVLCYEFLSLKYPDIVNLLNLINLIGWF--CSKL----DKPVFYSIPY-ITTVQDYMRSK 641
Query: 885 RHLI-----------RTSLQVLALQREGNLVKIRKQRTAFPPNFVHSLDGSHMM 927
I R +L+V R+ RK + A NF+H D M
Sbjct: 642 ATDIWLYDRVSKKRRRVTLRVPTPDRDS-----RKTKVATCVNFIHQKDAYIAM 690
>gi|15147299|ref|NP_150303.1| orf181 [Spizellomyces punctatus]
gi|15100068|gb|AAK84232.1|AF404303_6 orf181 [Spizellomyces punctatus]
Length = 181
Score = 51.2 bits (121), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 41/129 (31%), Positives = 60/129 (46%), Gaps = 25/129 (19%)
Query: 705 ISHLPIHQDGSCNGLQHYAALGRNTLEAAAVNLVAGEK---------PADVYSEIAVRVH 755
I HLP + D +C+G QH + + R+ + A VN++ E P D YS I ++
Sbjct: 6 IVHLPCYVDATCSGTQHISVIMRDAVLAKMVNVIECEDDAPYHGDRIPKDFYSSIIPFIN 65
Query: 756 E-IMKRDSNKDPSKHPQALLAKILIDQVDRKLVKQTVMTSVYGVTFVGAREQIKRRLEEK 814
E I D++ HP L + R LVK+ VMT Y V+ G +Q L E+
Sbjct: 66 EAIQALDAD-----HPLRYLP------ITRALVKRPVMTIPYNVSLKGIADQ----LMEQ 110
Query: 815 GHITDDRQL 823
G D+ L
Sbjct: 111 GVEAKDKDL 119
>gi|4206725|gb|AAD11786.1| RNA polymerase [Agaricus subrutilescens]
Length = 246
Score = 50.8 bits (120), Expect = 0.003, Method: Composition-based stats.
Identities = 50/220 (22%), Positives = 90/220 (40%), Gaps = 41/220 (18%)
Query: 681 DPFQCLAACINLSEALKSSSPHSVISHLPIHQDGSCNGLQHYAALGRNTLEAAAVNLVAG 740
+PFQ ++ I ++ L S+P + IS+ PI D SC+G+QH AAL A+ VN+
Sbjct: 9 EPFQFIS--IMYAKLLSISNPKANISN-PILFDASCSGIQHIAALTLEKELASNVNVYTD 65
Query: 741 ------EKPADVYSEIAVRVHEIMKRDSNKDPSKHPQALLAKILIDQVDRKLVKQTVMTS 794
+ P D Y+ ++ + K + + ++ Q++RK++K++VMT
Sbjct: 66 SSNPKEDYPQDFYTYALEKIRD-----------KLINSEITELRDIQLNRKIIKRSVMTI 114
Query: 795 VYGVTFVGAREQIKRRLEEK------------------GHITDDRQLFAAACYAAKVTLT 836
Y ++ G E + K + D + C K+
Sbjct: 115 PYNISMAGIGEHLMEHFTVKTVLKYRYVVIPGSATISSKDVYLDYSKYGQLC---KIIYF 171
Query: 837 ALGEIFEAARSIMGWLGDCAKVIASENQPVRWTTPLGLPV 876
L + + R + + + N P+ W TP GL +
Sbjct: 172 VLTKELPSLRLLSNYFESMIDIFVKLNIPITWVTPSGLKI 211
>gi|377806997|ref|YP_005090412.1| orf2 gene product (mitochondrion) [Boea hygrometrica]
gi|340549502|gb|AEK53323.1| hypothetical protein (mitochondrion) [Boea hygrometrica]
Length = 585
Score = 50.1 bits (118), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 91/375 (24%), Positives = 147/375 (39%), Gaps = 58/375 (15%)
Query: 580 DEEGFYYPHNLDFRGRAY---PMHPHLNHLSSDVCRGVLEFAEGRPLG-KSGLRWLKIHL 635
D FY P LDFRGR Y +H H D+ R ++ FA+ + + I +
Sbjct: 93 DGYQFYLPAFLDFRGRIYRSGILHFH----ERDLARSMIMFADQSDNNFNYNIAYYNICI 148
Query: 636 ANLFSGGVEKLSHDGRLAFVENHLYEIFDSAENPINGSRWWLT----AEDPFQCLAACIN 691
A F + K S + A N I D + N + A+ FQ LA +
Sbjct: 149 ATSF---LYKSSISEKEAI--NWFLNIMDDINSNKNPDDYLFKKASEAKRSFQFLANMLI 203
Query: 692 LSEALKSSSP----HSVISHLPIHQDGSCNGLQHYAALGRNTLEAAAVNLV---AGEKPA 744
L + +KS S + I + P+ QD S + Q + + A NL+ +
Sbjct: 204 LKD-IKSISEIQNYNLFILNTPLTQDASASAYQIMSYFLLDESMAMRTNLIPHPCHNEIQ 262
Query: 745 DVYSEIAVRVHEIMK---RDSNKDPSKHPQALLAKILIDQVDRKLVKQTVMTSVYGVTFV 801
DVYS + + E + +D+N L+K + + RK+ K M +YG T +
Sbjct: 263 DVYSYMLEELKEFINSELQDNN----------LSKTINGILTRKIAKGIFMPMIYGKTLM 312
Query: 802 GAREQIKRRLEEKGHITDDRQLFAAACYAAKVTLTALGEIFEAARSI--MGWLGDCAKVI 859
+KR L IT +++ F A K T + R I +GW+ + I
Sbjct: 313 STACDLKRDLS--SFIT-NKECFELASICFKFWKTKYSHMECLIRLIRHIGWIVSASDRI 369
Query: 860 ASEN-------QPVRWTTPLGLPVVQPYCKNERHLIRTSLQVLALQREGNLVKIRKQRTA 912
+ N Q P+ + + K R R +L+V + +++ RK T+
Sbjct: 370 VNYNAKNLITVQNYTKIEPINIWIYDKMNKKRR---RVTLRVSSDKKDT-----RKTETS 421
Query: 913 FPPNFVHSLDGSHMM 927
NF+H D + M
Sbjct: 422 TFVNFIHQKDANIAM 436
>gi|224365624|ref|YP_002608352.1| DNA-dependent RNA polymerase [Vitis vinifera]
gi|209954148|emb|CAQ77581.1| DNA-dependent RNA polymerase. This is a family of single chain RNA
polymerases; pfam00940 [Vitis vinifera]
gi|239764752|gb|ACS15222.1| DNA-dependent RNA polymerase [Vitis vinifera]
Length = 975
Score = 49.3 bits (116), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 119/562 (21%), Positives = 217/562 (38%), Gaps = 114/562 (20%)
Query: 441 VPMLVPPKKWKGYN-----------KGGYLFLPSYVMRTHGSRKQQEALKSVTGNCMKKV 489
+PM+ P WK +GGYL +PS G QQ+ + +T +
Sbjct: 319 LPMICKPLDWKPIRDDIIPSSLSDMRGGYLSIPS------GDFYQQKRYRVMTTRDLSHF 372
Query: 490 ---FE---------ALDTLGSTKWRVNKQVLSVL---ESIWVSGG-----NIAGL-VDRN 528
F+ ++ L + + ++K VLS + + V G +A L ++R
Sbjct: 373 HIKFDEGKYDDLCLTMNKLQAQSFEIHKDVLSFIMNNNELLVKYGLLMPRFLASLNINRA 432
Query: 529 DVLIPEKPLSE-DMTEVQKWKWSVRKAKKINQERHSQRCDTELKLSVARRMKDEEGF--Y 585
L+ LS D+T+V ++ K+ ER + +++A EG+ Y
Sbjct: 433 VELLRNSYLSNNDLTQVCNYQ----DLLKVFLERIQRARYETFVINIASAY---EGYKIY 485
Query: 586 YPHNLDFRGRAY---PMHPHLNHLSSDVCRGVLEFAEGRPLGK--------SGLRWLKIH 634
P +DFRGR Y +H H D+ R ++ F P G+ + ++
Sbjct: 486 LPAFVDFRGRIYRAGVLHFH----ERDLARSLVLFTCNNPSGELINHNIDDKEIMFIASA 541
Query: 635 LANLFSGGVEKLSHDGRLAFVENHLYEIFDSAENPINGSRWWLTAEDPFQCLAACINLSE 694
A E S+ + +H+ SAE+ I + L+A DP+Q ++ + +
Sbjct: 542 AAAFHYKKFE--SYKDSYQWYLDHVSMKASSAESIIELA---LSAADPYQFISKVLCIES 596
Query: 695 ALKSSSPHSVISHLPIHQDGSCNGLQHYAALGRNTLEAAAVNLV--------------AG 740
KS+ + +PI QD S + Q + + A NL+
Sbjct: 597 NNKSN-----LIQIPITQDASASAYQIMSYFLLDNDLALKTNLIPYIDYHYSPEYDFSDN 651
Query: 741 EKPADVYSEIAVRVHEIMKRDSNKDPSKHPQALLAKILIDQVDRKLVKQTVMTSVYGVTF 800
+K D+Y+ + + +++ + LA I+ ++ RKLVK M +YG T
Sbjct: 652 KKIKDIYTILLEELKVYFRKELTNN--------LADIVCPRLTRKLVKVLFMPMIYGKTV 703
Query: 801 VGAREQIKRRLEEKGHITDDRQLFAAACYAAKVTLTALGEIFEAARSIMGWLGDCAKVIA 860
+ + + + QL K + + + R+I WL ++
Sbjct: 704 ISIANDFNQHFDSLLDKGECMQLAKKIYIFYKTYYPGIVNLMDLIRNI-SWL------VS 756
Query: 861 SENQPVRWTTPLGLPVVQPYCKNERHLIRTSLQVLALQREGNLVKI-------RKQRTAF 913
+ ++PV ++ L VQ Y K++ I ++ +R+ L +I RK +
Sbjct: 757 AMDRPVLYSVSL-FTTVQDYMKSKTVNIWVYDRIHRKRRQVTL-RIPSGDRDRRKTHMST 814
Query: 914 PPNFVHSLD---GSHMMMTAVA 932
NF+H D HM+ V+
Sbjct: 815 FANFIHQKDAFIAMHMIKYMVS 836
>gi|167588939|ref|ZP_02381327.1| DNA-dependent RNA polymerase [Burkholderia ubonensis Bu]
Length = 246
Score = 49.3 bits (116), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 28/79 (35%), Positives = 40/79 (50%), Gaps = 2/79 (2%)
Query: 673 SRWWLTAEDPFQCLAACINLSEALKSSSPHSVISHLPIHQDGSCNGLQHYAALGRNTLEA 732
+R W+ A+ P+Q LAAC A + S L DGSC+G+Q A + R+
Sbjct: 34 NREWMKADKPWQFLAACFEW--AGYQEEGEAFRSRLAGALDGSCSGVQMLAGMTRDASAG 91
Query: 733 AAVNLVAGEKPADVYSEIA 751
A VN V+ E+ D Y +A
Sbjct: 92 AMVNFVSSERGDDYYGRMA 110
>gi|89148160|gb|ABD62823.1| mitochondrial single-subunit RNA polymerase [Naegleria gruberi]
Length = 66
Score = 48.1 bits (113), Expect = 0.022, Method: Composition-based stats.
Identities = 33/72 (45%), Positives = 42/72 (58%), Gaps = 6/72 (8%)
Query: 723 AALGRNTLEAAAVNLVAGEKPADVYSEIAVRVHEIMKRDSNKDPSKHPQALLAKILIDQV 782
AALGR+ L A VNL+ KP DVY V V E++K+ +D + LAK+L V
Sbjct: 1 AALGRDNLGALHVNLLPTSKPMDVY----VGVLEVVKKHIERDMKAGNK--LAKLLHGNV 54
Query: 783 DRKLVKQTVMTS 794
R +KQTVMTS
Sbjct: 55 YRSTIKQTVMTS 66
>gi|297738415|emb|CBI27616.3| unnamed protein product [Vitis vinifera]
Length = 30
Score = 47.8 bits (112), Expect = 0.034, Method: Composition-based stats.
Identities = 17/23 (73%), Positives = 22/23 (95%)
Query: 708 LPIHQDGSCNGLQHYAALGRNTL 730
+P+HQDGSCNGLQH+AALGR+ +
Sbjct: 1 MPVHQDGSCNGLQHHAALGRDKV 23
>gi|300120042|emb|CBK19596.2| DNA-directed RNA polymerase [Blastocystis hominis]
Length = 276
Score = 46.6 bits (109), Expect = 0.061, Method: Compositional matrix adjust.
Identities = 29/101 (28%), Positives = 59/101 (58%), Gaps = 6/101 (5%)
Query: 178 LRRRQVKQETEAWERMVDEYKELEAKMIEKRLAPNLPHIKGLFLGWFGPLSEAIEREQ-K 236
L +RQ++ E A + V +Y+ ++A++ + +L + L WF PLS AI EQ
Sbjct: 94 LLKRQLELEENAIDLAVQKYQAMKAEVEKIGQGVSLRPAQILLADWFDPLSTAIREEQLN 153
Query: 237 MQRTKKQKAAYA-----PHIELLPADKVAVIVMHKMMGLVM 272
++ + + K A + P++ LL +K+++IV+H+++ ++M
Sbjct: 154 IKYSSQGKGAISEKAIQPYLLLLKPEKISIIVLHELVHILM 194
>gi|224116180|ref|XP_002331981.1| predicted protein [Populus trichocarpa]
gi|222832105|gb|EEE70582.1| predicted protein [Populus trichocarpa]
Length = 187
Score = 46.2 bits (108), Expect = 0.082, Method: Compositional matrix adjust.
Identities = 32/75 (42%), Positives = 40/75 (53%), Gaps = 12/75 (16%)
Query: 270 LVMAGHEDRCVQVVQAAVHIGMAIEQE-------IRIHSFLEKTKNYKR-----KKIIAD 317
+VM G E C +VV AA IG AIEQE IRIH+ LEKT+ K K +
Sbjct: 1 MVMTGGEHGCARVVTAACMIGDAIEQEIFSVMKQIRIHNILEKTRKKKERADDSKNGVEG 60
Query: 318 TEEVLSKEKELLRKR 332
+ KE+E LRK+
Sbjct: 61 ESPAVMKEQENLRKK 75
Score = 41.2 bits (95), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 14/20 (70%), Positives = 19/20 (95%)
Query: 433 AKHMLIPYVPMLVPPKKWKG 452
A+HM+IPY+PMLVPP +W+G
Sbjct: 91 ARHMVIPYMPMLVPPLRWRG 110
>gi|416251162|ref|ZP_11637570.1| hypothetical protein E9W_06926 [Moraxella catarrhalis CO72]
gi|326573163|gb|EGE23132.1| hypothetical protein E9W_06926 [Moraxella catarrhalis CO72]
Length = 402
Score = 46.2 bits (108), Expect = 0.091, Method: Compositional matrix adjust.
Identities = 43/172 (25%), Positives = 79/172 (45%), Gaps = 35/172 (20%)
Query: 628 LRWLKIHLANLFSGGVEKLSHDGRLAFVENHLYEIFDSAENPINGSRWWLTAEDPFQCLA 687
+++L I +AN F G++KL+++ R+ +V+ ++ + + E AE+P
Sbjct: 7 MQYLAIDIANHF--GLDKLNYEERIDWVKTNINSLENMTEQ----------AEEPILFAK 54
Query: 688 ACINLSEALKSSSPHSVISHLPIHQDGSCNGLQHYAALGRNTLEAAAVNLVAGEKPADVY 747
A AL+ + H + D +C+GLQ + L + L+ K +D Y
Sbjct: 55 AV----HALRQTQQGIPTGH-TVAFDATCSGLQLMSLLTNCKSGMSLTGLIDPNKRSDAY 109
Query: 748 SEIAVRVHEIMKRDSNKDPSKHPQALLAKILID--QVDRKLVKQTVMTSVYG 797
++I ++ ++K+D ID +V RK KQ +MTS+YG
Sbjct: 110 TQITEYINYLLKQDG----------------IDSVEVSRKDAKQAIMTSLYG 145
>gi|416239277|ref|ZP_11631827.1| hypothetical protein E9Q_06158 [Moraxella catarrhalis BC1]
gi|326567465|gb|EGE17580.1| hypothetical protein E9Q_06158 [Moraxella catarrhalis BC1]
Length = 402
Score = 45.8 bits (107), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 46/175 (26%), Positives = 81/175 (46%), Gaps = 41/175 (23%)
Query: 628 LRWLKIHLANLFSGGVEKLSHDGRLAFVE---NHLYEIFDSAENPINGSRWWLTAEDPFQ 684
+++L I +AN F G++KL+++ R+ +V+ N L + + AE PI L A+ +
Sbjct: 7 MQYLAIDIANHF--GLDKLNYEERIDWVKTNINSLENMTEQAEEPI------LFAKAVY- 57
Query: 685 CLAACINLSEALKSSSPHSVISHLPIHQDGSCNGLQHYAALGRNTLEAAAVNLVAGEKPA 744
AL+ + H + D +C+GLQ + L + L+ K +
Sbjct: 58 ----------ALRQTQQGIPTGH-TVAFDATCSGLQLMSLLTNCKSGMSLTGLIDPNKRS 106
Query: 745 DVYSEIAVRVHEIMKRDSNKDPSKHPQALLAKILID--QVDRKLVKQTVMTSVYG 797
D Y++I ++ ++K+D ID +V RK KQ +MTS+YG
Sbjct: 107 DAYTQITEYINYLLKQDG----------------IDSVEVSRKDAKQAIMTSLYG 145
>gi|116073358|ref|ZP_01470620.1| DNA-directed RNA polymerase [Synechococcus sp. RS9916]
gi|116068663|gb|EAU74415.1| DNA-directed RNA polymerase [Synechococcus sp. RS9916]
Length = 193
Score = 45.1 bits (105), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 42/158 (26%), Positives = 70/158 (44%), Gaps = 15/158 (9%)
Query: 572 LSVARRMKDEEGFYYPHNLDFRGRAYPMHPHLNHLSSDVCRGVLEFAEGRPLGKSGLRWL 631
L +A R + + P D R R M LN SD + +L FA + + +R +
Sbjct: 39 LMMAARFRPIDHCDLPTYFDSRLRMSYMCDTLNPQGSDYQKALLHFANSVQVTEENIREV 98
Query: 632 K----IHLANLFSGGVE-------KLSHDGRLAFVENHLYEIFDSAENPINGSRWWLTAE 680
+ I LAN + +E K S +GR+A+ + ++ D AE P ++W +
Sbjct: 99 QKDLLITLAN--AAAIETPAVKTDKPSMEGRMAWELEMVTKLKDEAEYPAVNRKFWTECD 156
Query: 681 DPFQCLAACINLSEALKSSSPHSVISHLPIHQDGSCNG 718
+PFQ LAA E S ++ +P +D + +G
Sbjct: 157 EPFQFLAALREYYEIFVWCC--STVARVPNGRDATNSG 192
>gi|194748527|ref|XP_001956696.1| GF24453 [Drosophila ananassae]
gi|190623978|gb|EDV39502.1| GF24453 [Drosophila ananassae]
Length = 1058
Score = 42.4 bits (98), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 26/69 (37%), Positives = 35/69 (50%), Gaps = 2/69 (2%)
Query: 833 VTLTALGEIFEAARSIMGWLG-DCAKVIASENQPVRWTTPLGLPVVQPYC-KNERHLIRT 890
+ LT+ GE++ +I G LG + K + NQPVR TT LG+PV C N +I
Sbjct: 156 LALTSCGELYSWGSNIYGQLGVNTPKEVTHSNQPVRLTTLLGIPVAAIACGGNHSFIISK 215
Query: 891 SLQVLALQR 899
S V R
Sbjct: 216 SSAVFGWGR 224
>gi|148271498|ref|YP_001221059.1| hypothetical protein CMM_0319 [Clavibacter michiganensis subsp.
michiganensis NCPPB 382]
gi|147829428|emb|CAN00341.1| conserved hypothetical protein [Clavibacter michiganensis subsp.
michiganensis NCPPB 382]
Length = 221
Score = 40.8 bits (94), Expect = 3.5, Method: Composition-based stats.
Identities = 22/67 (32%), Positives = 34/67 (50%), Gaps = 1/67 (1%)
Query: 338 KSKRVMEAQKLLKNEETKPWGRDTQAKLGSRLVELLIETAYVQHPVN-PADYSPPDVRPA 396
+ +R+ A+ L + + PW R A L SRLVE ++ V+ P+ DY V PA
Sbjct: 87 RERRMSPAKTLAEFDRVAPWTRTPPAALASRLVEAVVHAEDVRRPLGVRRDYPLGHVLPA 146
Query: 397 FRHRFKT 403
H+ +T
Sbjct: 147 LTHQLRT 153
>gi|266634773|gb|ACY78115.1| putative DNA-dependent RNA polymerase [Acinetobacter phage phiAB2]
Length = 263
Score = 40.4 bits (93), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 31/115 (26%), Positives = 49/115 (42%), Gaps = 7/115 (6%)
Query: 432 SAKHMLIPYVPMLVPPKKWKGYNKGGYLF------LPSYVMRTHGSRKQQEALKSVTGNC 485
SA ++ Y PML+ P W+G GGYL P +R + + ++ N
Sbjct: 138 SAARAVVKYPPMLIQPMDWEGQYNGGYLTEWFKHNSPMCGIRFIKKEHKHWVIDNLN-NG 196
Query: 486 MKKVFEALDTLGSTKWRVNKQVLSVLESIWVSGGNIAGLVDRNDVLIPEKPLSED 540
+ V A++ S +R+NK +L++L I GL P P +ED
Sbjct: 197 AELVKAAMNKAQSVPYRINKDILAILRKAVAIRVGILGLPSYQPAPKPAFPFTED 251
>gi|452849734|ref|YP_007475379.1| hypothetical protein (mitochondrion) [Microbotryum
lychnidis-dioicae]
gi|452849744|ref|YP_007475389.1| hypothetical protein (mitochondrion) [Microbotryum
lychnidis-dioicae]
gi|445067452|gb|AGE14593.1| hypothetical protein (mitochondrion) [Microbotryum
lychnidis-dioicae]
gi|445067462|gb|AGE14603.1| hypothetical protein (mitochondrion) [Microbotryum
lychnidis-dioicae]
Length = 152
Score = 40.0 bits (92), Expect = 6.6, Method: Composition-based stats.
Identities = 32/152 (21%), Positives = 65/152 (42%), Gaps = 18/152 (11%)
Query: 786 LVKQTVMTSVYGVTFVGAREQIK----RRLEEK---GHITDDRQLFAAACYAAKVTLTAL 838
++K+ ++T Y ++ +G +EQ++ R E+K I ++R + V L L
Sbjct: 1 MIKKPIITINYNISRIGVKEQLQDQFTRLFEDKIPYYKIPENRTKDGKVMSLSPVELWEL 60
Query: 839 GEI-------FEAARSIMGWLGDCAKVIASENQPVRWTTPLGLPVVQPYCKNERHLIRTS 891
+ A + ++ +L ++ N+P+ W TP G+ + Y E +
Sbjct: 61 SSVVYTTFKNLPAYKDLINYLDSINNIMNELNRPLTWITPKGIKIYANYRTYESLTTQAK 120
Query: 892 L----QVLALQREGNLVKIRKQRTAFPPNFVH 919
+ + + N + RK + AF PN +H
Sbjct: 121 FFEHSKPVTISIPTNKLNKRKNKIAFMPNLIH 152
>gi|224171355|ref|XP_002339484.1| predicted protein [Populus trichocarpa]
gi|222875221|gb|EEF12352.1| predicted protein [Populus trichocarpa]
Length = 109
Score = 40.0 bits (92), Expect = 7.0, Method: Compositional matrix adjust.
Identities = 22/46 (47%), Positives = 27/46 (58%)
Query: 159 YKRIKLQEYREMKKRKFNLLRRRQVKQETEAWERMVDEYKELEAKM 204
+ R +L+ + RK +LRRRQVK E EAWE EYKEL M
Sbjct: 64 FSRRRLRANPGIGSRKHRVLRRRQVKIEAEAWELATKEYKELLKDM 109
>gi|402585201|gb|EJW79141.1| DNA-directed RNA polymerase, partial [Wuchereria bancrofti]
Length = 654
Score = 39.7 bits (91), Expect = 8.0, Method: Compositional matrix adjust.
Identities = 42/169 (24%), Positives = 74/169 (43%), Gaps = 21/169 (12%)
Query: 357 WGRDTQAKLGSRLVELLIETAYVQHPVNPADYSPPDVRPAFRHRFKTILKHPGQKTTKRY 416
+G + +LGS L +++E Q + D P F +K ++ +
Sbjct: 458 FGSGIREQLGSFLTSVVLEAC--QAHIKTGDRGKTLSIPVFS--YKDVVNEESSFDGEVL 513
Query: 417 GVVECDPLVLEGLDRSAKH-------MLIPYVPMLVPPKKWKGYNKGGYLFLPSY-VMRT 468
V + + ++ KH +LI + LVPP+ W +GG + S+ V+R
Sbjct: 514 CVTKMIKICSAMMEVVCKHQFEWMVFLLIYCLWKLVPPRPWLDSGEGGPYYGSSFNVLRP 573
Query: 469 HG-------SRKQQEALKSVTGNCMKKVFEALDTLGSTKWRVNKQVLSV 510
H + + ++ LKS + VF+AL+ LG T W++N+ VL V
Sbjct: 574 HPDYSMINVNYEMKKRLKSRKQ--ARPVFDALNDLGITPWKINEPVLDV 620
Database: nr
Posted date: Mar 3, 2013 10:45 PM
Number of letters in database: 999,999,864
Number of sequences in database: 2,912,245
Database: /local_scratch/syshi//blastdatabase/nr.01
Posted date: Mar 3, 2013 10:52 PM
Number of letters in database: 999,999,666
Number of sequences in database: 2,912,720
Database: /local_scratch/syshi//blastdatabase/nr.02
Posted date: Mar 3, 2013 10:58 PM
Number of letters in database: 999,999,938
Number of sequences in database: 3,014,250
Database: /local_scratch/syshi//blastdatabase/nr.03
Posted date: Mar 3, 2013 11:03 PM
Number of letters in database: 999,999,780
Number of sequences in database: 2,805,020
Database: /local_scratch/syshi//blastdatabase/nr.04
Posted date: Mar 3, 2013 11:08 PM
Number of letters in database: 999,999,551
Number of sequences in database: 2,816,253
Database: /local_scratch/syshi//blastdatabase/nr.05
Posted date: Mar 3, 2013 11:13 PM
Number of letters in database: 999,999,897
Number of sequences in database: 2,981,387
Database: /local_scratch/syshi//blastdatabase/nr.06
Posted date: Mar 3, 2013 11:18 PM
Number of letters in database: 999,999,649
Number of sequences in database: 2,911,476
Database: /local_scratch/syshi//blastdatabase/nr.07
Posted date: Mar 3, 2013 11:24 PM
Number of letters in database: 999,999,452
Number of sequences in database: 2,920,260
Database: /local_scratch/syshi//blastdatabase/nr.08
Posted date: Mar 3, 2013 11:25 PM
Number of letters in database: 64,230,274
Number of sequences in database: 189,558
Lambda K H
0.319 0.133 0.394
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 14,424,670,253
Number of Sequences: 23463169
Number of extensions: 596557767
Number of successful extensions: 1871612
Number of sequences better than 100.0: 828
Number of HSP's better than 100.0 without gapping: 720
Number of HSP's successfully gapped in prelim test: 108
Number of HSP's that attempted gapping in prelim test: 1865608
Number of HSP's gapped (non-prelim): 1539
length of query: 952
length of database: 8,064,228,071
effective HSP length: 152
effective length of query: 800
effective length of database: 8,792,793,679
effective search space: 7034234943200
effective search space used: 7034234943200
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 82 (36.2 bits)