BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 002216
(952 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|O24600|RPOT3_ARATH DNA-directed RNA polymerase 3, chloroplastic OS=Arabidopsis
thaliana GN=RPOT3 PE=2 SV=1
Length = 993
Score = 1317 bits (3409), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 634/859 (73%), Positives = 729/859 (84%), Gaps = 13/859 (1%)
Query: 90 IENSVDFHIPTCEQEQNFHQRVENTETCADLVIPRSENSTNHQLMCLEPRRRIFVQDPPW 149
I NSV FH E +N T A L I EN L RRR+F+QDPPW
Sbjct: 74 ISNSVHFHGNLIESFENQDSSYAGTIKGASL-IEELENPVERN--GLSGRRRLFMQDPPW 130
Query: 150 FSSIFLKGLYKRIKLQ---EYREMKKRKFNLLRRRQVKQETEAWERMVDEYKELEAKMIE 206
S++FLKGL K + E +++ KRKF+ LRRRQVK+ETEAWERMVDEY++LE +M E
Sbjct: 131 ISALFLKGLSKMVDQTLKIERKDIDKRKFDSLRRRQVKEETEAWERMVDEYRDLEKEMCE 190
Query: 207 KRLAPNLPHIKGLFLGWFGPLSEAIEREQKMQR--TKKQKAAYAPHIELLPADKVAVIVM 264
K LAPNLP++K +FLGWF PL + IEREQK+Q+ +KK +AAYAPHIELLPADK+AVIVM
Sbjct: 191 KNLAPNLPYVKHMFLGWFQPLKDVIEREQKLQKNKSKKVRAAYAPHIELLPADKMAVIVM 250
Query: 265 HKMMGLVMAGHEDRCVQVVQAAVHIGMAIEQEIRIHSFLEKTKNYKRKKIIADTEEVLSK 324
HKMMGLVM+GHED C+QVVQAAV IG+AIEQE+RIH+FL++T RK D++E L K
Sbjct: 251 HKMMGLVMSGHEDGCIQVVQAAVSIGIAIEQEVRIHNFLKRT----RKNNAGDSQEEL-K 305
Query: 325 EKELLRKRVNSLIKSKRVMEAQKLLKNEETKPWGRDTQAKLGSRLVELLIETAYVQHPVN 384
EK+LLRKRVNSLI+ KR+++A K++K+E TKPWGR TQAKLGSRL+ELLIE AYVQ P+
Sbjct: 306 EKQLLRKRVNSLIRRKRIIDALKVVKSEGTKPWGRATQAKLGSRLLELLIEAAYVQPPLT 365
Query: 385 PADYSPPDVRPAFRHRFKTILKHPGQKTTKRYGVVECDPLVLEGLDRSAKHMLIPYVPML 444
+ S P+ RPAFRHRFKT+ K+PG K +RYGV+ECD L+L GLD+SAKHMLIPYVPML
Sbjct: 366 QSGDSIPEFRPAFRHRFKTVTKYPGSKLVRRYGVIECDSLLLAGLDKSAKHMLIPYVPML 425
Query: 445 VPPKKWKGYNKGGYLFLPSYVMRTHGSRKQQEALKSVTGNCMKKVFEALDTLGSTKWRVN 504
VPPK+WKGY+KGGYLFLPSY+MRTHGS+KQQ+ALK ++ +VFEALDTLG+TKWRVN
Sbjct: 426 VPPKRWKGYDKGGYLFLPSYIMRTHGSKKQQDALKDISHKTAHRVFEALDTLGNTKWRVN 485
Query: 505 KQVLSVLESIWVSGGNIAGLVDRNDVLIPEKPLSEDMTEVQKWKWSVRKAKKINQERHSQ 564
+ +L V+E +W GGNIAGLV+R DV IPEKP SED E+Q WKWS RKA KIN+ERHS
Sbjct: 486 RNILDVVERLWADGGNIAGLVNREDVPIPEKPSSEDPEELQSWKWSARKANKINRERHSL 545
Query: 565 RCDTELKLSVARRMKDEEGFYYPHNLDFRGRAYPMHPHLNHLSSDVCRGVLEFAEGRPLG 624
RCD ELKLSVAR+MKDEEGFYYPHNLDFRGRAYPMHPHLNHLSSD+CRG LEFAEGRPLG
Sbjct: 546 RCDVELKLSVARKMKDEEGFYYPHNLDFRGRAYPMHPHLNHLSSDLCRGTLEFAEGRPLG 605
Query: 625 KSGLRWLKIHLANLFSGGVEKLSHDGRLAFVENHLYEIFDSAENPINGSRWWLTAEDPFQ 684
KSGL WLKIHLANL++GGVEKLSHD RLAFVENHL +I DSAENPI+G RWWL AEDPFQ
Sbjct: 606 KSGLHWLKIHLANLYAGGVEKLSHDARLAFVENHLDDIMDSAENPIHGKRWWLKAEDPFQ 665
Query: 685 CLAACINLSEALKSSSPHSVISHLPIHQDGSCNGLQHYAALGRNTLEAAAVNLVAGEKPA 744
CLAAC+ L++ALKS SP+SVISHLPIHQDGSCNGLQHYAALGR++ EAAAVNLVAGEKPA
Sbjct: 666 CLAACVILTQALKSPSPYSVISHLPIHQDGSCNGLQHYAALGRDSFEAAAVNLVAGEKPA 725
Query: 745 DVYSEIAVRVHEIMKRDSNKDPSKHPQALLAKILIDQVDRKLVKQTVMTSVYGVTFVGAR 804
DVYSEI+ RVHEIMK+DS+KDP +P A LAKILI QVDRKLVKQTVMTSVYGVT+VGAR
Sbjct: 726 DVYSEISRRVHEIMKKDSSKDPESNPTAALAKILITQVDRKLVKQTVMTSVYGVTYVGAR 785
Query: 805 EQIKRRLEEKGHITDDRQLFAAACYAAKVTLTALGEIFEAARSIMGWLGDCAKVIASENQ 864
EQIKRRLEEKG ITD+R LFAAACY+AKVTL ALGEIFEAAR+IM WLGDCAK+IAS+N
Sbjct: 786 EQIKRRLEEKGVITDERMLFAAACYSAKVTLAALGEIFEAARAIMSWLGDCAKIIASDNH 845
Query: 865 PVRWTTPLGLPVVQPYCKNERHLIRTSLQVLALQREGNLVKIRKQRTAFPPNFVHSLDGS 924
PVRW TPLGLPVVQPYC++ERHLIRTSLQVLALQREGN V +RKQRTAFPPNFVHSLDG+
Sbjct: 846 PVRWITPLGLPVVQPYCRSERHLIRTSLQVLALQREGNTVDVRKQRTAFPPNFVHSLDGT 905
Query: 925 HMMMTAVACRDAGLHFAGL 943
HMMMTAVACR+AGL+FAG+
Sbjct: 906 HMMMTAVACREAGLNFAGV 924
>sp|P69242|RPOT3_NICSY DNA-directed RNA polymerase 3, chloroplastic OS=Nicotiana
sylvestris GN=RPOT3 PE=2 SV=1
Length = 977
Score = 1256 bits (3251), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 599/861 (69%), Positives = 717/861 (83%), Gaps = 20/861 (2%)
Query: 90 IENSVDFHIPTCEQEQNFHQRVENTETCADLVIPRSENSTNHQLMCLEPRRRIFVQDPPW 149
I N++ C + + N + A+ V+ + N +R+F+QDPPW
Sbjct: 61 INNNIQSQTTVCVSTDENLEELVNLQKIANGVLTKESN------------KRVFIQDPPW 108
Query: 150 FSSIFLKGLYKRIK------LQEYREMKKRKFNLLRRRQVKQETEAWERMVDEYKELEAK 203
SS+F+ L+ R K + ++R++ +LRRRQ+K ETEAWE+MV+EY+ELE +
Sbjct: 109 VSSLFMNSLFVRAKQVQGVRREFREIERRRRYAMLRRRQIKAETEAWEQMVEEYRELERE 168
Query: 204 MIEKRLAPNLPHIKGLFLGWFGPLSEAIEREQKMQRTKKQKAAYAPHIELLPADKVAVIV 263
M EK+LAPNLP++K L LGWF PL +AIE+EQ + T K +AA+APHI+ LPADK+AVIV
Sbjct: 169 MCEKKLAPNLPYVKKLLLGWFEPLRQAIEKEQNAETTVKHRAAFAPHIDSLPADKMAVIV 228
Query: 264 MHKMMGLVM-AGHEDRCVQVVQAAVHIGMAIEQEIRIHSFLEKTKNYKRKKIIADTEEVL 322
MHK+MGL+M G E+RCVQVVQAAV IGMA+E E+RIH+FLEKTK ++ A ++E +
Sbjct: 229 MHKLMGLLMMGGKEERCVQVVQAAVQIGMAVENEVRIHNFLEKTKKLQKHMTGAQSQEDM 288
Query: 323 SKEKELLRKRVNSLIKSKRVMEAQKLLKNEETKPWGRDTQAKLGSRLVELLIETAYVQHP 382
S+E +LRKRV SLIK RV+E +KL+K+EE + WGRDTQAKLG RL+ELL ETAYVQ P
Sbjct: 289 SRETMILRKRVKSLIKRNRVVEVRKLMKSEEPESWGRDTQAKLGCRLLELLTETAYVQPP 348
Query: 383 VNPADYSPPDVRPAFRHRFKTILKHPGQKTTKRYGVVECDPLVLEGLDRSAKHMLIPYVP 442
V+ + +PPD+RPAFRH F+ + PG+ K+YGV+ECDPLV+ G+DR+ K M+IPYVP
Sbjct: 349 VDQSADTPPDIRPAFRHVFRIATRDPGKSIVKKYGVIECDPLVVAGVDRTVKQMMIPYVP 408
Query: 443 MLVPPKKWKGYNKGGYLFLPSYVMRTHGSRKQQEALKSVTGNCMKKVFEALDTLGSTKWR 502
MLVPPKKW+GY+KGGYLFLPSY+MRTHGSR+QQ+A++SV M++V+EALDTLGSTKWR
Sbjct: 409 MLVPPKKWRGYDKGGYLFLPSYLMRTHGSRRQQDAVRSVPTKQMQQVYEALDTLGSTKWR 468
Query: 503 VNKQVLSVLESIWVSGGNIAGLVDRNDVLIPEKPLSEDMTEVQKWKWSVRKAKKINQERH 562
VNK++LSV+ESIW GGNIAGLVDR DV IPE S+D+ EV+KWKW VRK+KKINQE H
Sbjct: 469 VNKRILSVVESIWAGGGNIAGLVDRKDVPIPELH-SDDIMEVKKWKWRVRKSKKINQELH 527
Query: 563 SQRCDTELKLSVARRMKDEEGFYYPHNLDFRGRAYPMHPHLNHLSSDVCRGVLEFAEGRP 622
SQRCDTELKLSVAR++KDEEGFYYPHNLDFRGRAYPMHPHLNHLSSD+CRG+LEFAEGRP
Sbjct: 528 SQRCDTELKLSVARKLKDEEGFYYPHNLDFRGRAYPMHPHLNHLSSDLCRGILEFAEGRP 587
Query: 623 LGKSGLRWLKIHLANLFSGGVEKLSHDGRLAFVENHLYEIFDSAENPINGSRWWLTAEDP 682
LGKSGLRWLKIHLA+L++GG+EKL +D RLAFVENH+ +I DSA NP+NG+RWWL AEDP
Sbjct: 588 LGKSGLRWLKIHLASLYAGGIEKLCYDARLAFVENHIDDILDSANNPLNGNRWWLNAEDP 647
Query: 683 FQCLAACINLSEALKSSSPHSVISHLPIHQDGSCNGLQHYAALGRNTLEAAAVNLVAGEK 742
FQCLAACINLSEALKSSSPH+V SHLPIHQDGSCNGLQHYAALGR+++EAAAVNLVAG+K
Sbjct: 648 FQCLAACINLSEALKSSSPHTVFSHLPIHQDGSCNGLQHYAALGRDSMEAAAVNLVAGDK 707
Query: 743 PADVYSEIAVRVHEIMKRDSNKDPSKHPQALLAKILIDQVDRKLVKQTVMTSVYGVTFVG 802
PADVY+EIA+RV I++ DS KDP+ P ALLAK+LIDQVDRKLVKQTVMTSVYGVT+VG
Sbjct: 708 PADVYTEIALRVDHIIRGDSIKDPATDPNALLAKLLIDQVDRKLVKQTVMTSVYGVTYVG 767
Query: 803 AREQIKRRLEEKGHITDDRQLFAAACYAAKVTLTALGEIFEAARSIMGWLGDCAKVIASE 862
AREQIKRRLEEKG I DDR LF A+CYAAKVTL ALGE+F+AAR M WLGDCAKVIASE
Sbjct: 768 AREQIKRRLEEKGLIDDDRLLFTASCYAAKVTLAALGELFQAARGTMTWLGDCAKVIASE 827
Query: 863 NQPVRWTTPLGLPVVQPYCKNERHLIRTSLQVLALQREGNLVKIRKQRTAFPPNFVHSLD 922
NQPVRWTTPLGLPVVQPY K +RH+IRTSLQVLALQREG+ V++RKQRTAFPPNFVHSLD
Sbjct: 828 NQPVRWTTPLGLPVVQPYFKTQRHVIRTSLQVLALQREGDTVEVRKQRTAFPPNFVHSLD 887
Query: 923 GSHMMMTAVACRDAGLHFAGL 943
GSHMMMTAVACRDAGL FAG+
Sbjct: 888 GSHMMMTAVACRDAGLQFAGV 908
>sp|P69243|RPO3A_TOBAC DNA-directed RNA polymerase 3A, chloroplastic OS=Nicotiana tabacum
GN=RPOT3-SYL PE=3 SV=1
Length = 977
Score = 1256 bits (3251), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 599/861 (69%), Positives = 717/861 (83%), Gaps = 20/861 (2%)
Query: 90 IENSVDFHIPTCEQEQNFHQRVENTETCADLVIPRSENSTNHQLMCLEPRRRIFVQDPPW 149
I N++ C + + N + A+ V+ + N +R+F+QDPPW
Sbjct: 61 INNNIQSQTTVCVSTDENLEELVNLQKIANGVLTKESN------------KRVFIQDPPW 108
Query: 150 FSSIFLKGLYKRIK------LQEYREMKKRKFNLLRRRQVKQETEAWERMVDEYKELEAK 203
SS+F+ L+ R K + ++R++ +LRRRQ+K ETEAWE+MV+EY+ELE +
Sbjct: 109 VSSLFMNSLFVRAKQVQGVRREFREIERRRRYAMLRRRQIKAETEAWEQMVEEYRELERE 168
Query: 204 MIEKRLAPNLPHIKGLFLGWFGPLSEAIEREQKMQRTKKQKAAYAPHIELLPADKVAVIV 263
M EK+LAPNLP++K L LGWF PL +AIE+EQ + T K +AA+APHI+ LPADK+AVIV
Sbjct: 169 MCEKKLAPNLPYVKKLLLGWFEPLRQAIEKEQNAETTVKHRAAFAPHIDSLPADKMAVIV 228
Query: 264 MHKMMGLVM-AGHEDRCVQVVQAAVHIGMAIEQEIRIHSFLEKTKNYKRKKIIADTEEVL 322
MHK+MGL+M G E+RCVQVVQAAV IGMA+E E+RIH+FLEKTK ++ A ++E +
Sbjct: 229 MHKLMGLLMMGGKEERCVQVVQAAVQIGMAVENEVRIHNFLEKTKKLQKHMTGAQSQEDM 288
Query: 323 SKEKELLRKRVNSLIKSKRVMEAQKLLKNEETKPWGRDTQAKLGSRLVELLIETAYVQHP 382
S+E +LRKRV SLIK RV+E +KL+K+EE + WGRDTQAKLG RL+ELL ETAYVQ P
Sbjct: 289 SRETMILRKRVKSLIKRNRVVEVRKLMKSEEPESWGRDTQAKLGCRLLELLTETAYVQPP 348
Query: 383 VNPADYSPPDVRPAFRHRFKTILKHPGQKTTKRYGVVECDPLVLEGLDRSAKHMLIPYVP 442
V+ + +PPD+RPAFRH F+ + PG+ K+YGV+ECDPLV+ G+DR+ K M+IPYVP
Sbjct: 349 VDQSADTPPDIRPAFRHVFRIATRDPGKSIVKKYGVIECDPLVVAGVDRTVKQMMIPYVP 408
Query: 443 MLVPPKKWKGYNKGGYLFLPSYVMRTHGSRKQQEALKSVTGNCMKKVFEALDTLGSTKWR 502
MLVPPKKW+GY+KGGYLFLPSY+MRTHGSR+QQ+A++SV M++V+EALDTLGSTKWR
Sbjct: 409 MLVPPKKWRGYDKGGYLFLPSYLMRTHGSRRQQDAVRSVPTKQMQQVYEALDTLGSTKWR 468
Query: 503 VNKQVLSVLESIWVSGGNIAGLVDRNDVLIPEKPLSEDMTEVQKWKWSVRKAKKINQERH 562
VNK++LSV+ESIW GGNIAGLVDR DV IPE S+D+ EV+KWKW VRK+KKINQE H
Sbjct: 469 VNKRILSVVESIWAGGGNIAGLVDRKDVPIPELH-SDDIMEVKKWKWRVRKSKKINQELH 527
Query: 563 SQRCDTELKLSVARRMKDEEGFYYPHNLDFRGRAYPMHPHLNHLSSDVCRGVLEFAEGRP 622
SQRCDTELKLSVAR++KDEEGFYYPHNLDFRGRAYPMHPHLNHLSSD+CRG+LEFAEGRP
Sbjct: 528 SQRCDTELKLSVARKLKDEEGFYYPHNLDFRGRAYPMHPHLNHLSSDLCRGILEFAEGRP 587
Query: 623 LGKSGLRWLKIHLANLFSGGVEKLSHDGRLAFVENHLYEIFDSAENPINGSRWWLTAEDP 682
LGKSGLRWLKIHLA+L++GG+EKL +D RLAFVENH+ +I DSA NP+NG+RWWL AEDP
Sbjct: 588 LGKSGLRWLKIHLASLYAGGIEKLCYDARLAFVENHIDDILDSANNPLNGNRWWLNAEDP 647
Query: 683 FQCLAACINLSEALKSSSPHSVISHLPIHQDGSCNGLQHYAALGRNTLEAAAVNLVAGEK 742
FQCLAACINLSEALKSSSPH+V SHLPIHQDGSCNGLQHYAALGR+++EAAAVNLVAG+K
Sbjct: 648 FQCLAACINLSEALKSSSPHTVFSHLPIHQDGSCNGLQHYAALGRDSMEAAAVNLVAGDK 707
Query: 743 PADVYSEIAVRVHEIMKRDSNKDPSKHPQALLAKILIDQVDRKLVKQTVMTSVYGVTFVG 802
PADVY+EIA+RV I++ DS KDP+ P ALLAK+LIDQVDRKLVKQTVMTSVYGVT+VG
Sbjct: 708 PADVYTEIALRVDHIIRGDSIKDPATDPNALLAKLLIDQVDRKLVKQTVMTSVYGVTYVG 767
Query: 803 AREQIKRRLEEKGHITDDRQLFAAACYAAKVTLTALGEIFEAARSIMGWLGDCAKVIASE 862
AREQIKRRLEEKG I DDR LF A+CYAAKVTL ALGE+F+AAR M WLGDCAKVIASE
Sbjct: 768 AREQIKRRLEEKGLIDDDRLLFTASCYAAKVTLAALGELFQAARGTMTWLGDCAKVIASE 827
Query: 863 NQPVRWTTPLGLPVVQPYCKNERHLIRTSLQVLALQREGNLVKIRKQRTAFPPNFVHSLD 922
NQPVRWTTPLGLPVVQPY K +RH+IRTSLQVLALQREG+ V++RKQRTAFPPNFVHSLD
Sbjct: 828 NQPVRWTTPLGLPVVQPYFKTQRHVIRTSLQVLALQREGDTVEVRKQRTAFPPNFVHSLD 887
Query: 923 GSHMMMTAVACRDAGLHFAGL 943
GSHMMMTAVACRDAGL FAG+
Sbjct: 888 GSHMMMTAVACRDAGLQFAGV 908
>sp|Q8L6J1|RPO3B_TOBAC DNA-directed RNA polymerase 3B, chloroplastic OS=Nicotiana tabacum
GN=RPOT3-TOM PE=2 SV=2
Length = 977
Score = 1231 bits (3186), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 594/814 (72%), Positives = 703/814 (86%), Gaps = 7/814 (0%)
Query: 137 EPRRRIFVQDPPWFSSIFLKGLYKRIK------LQEYREMKKRKFNLLRRRQVKQETEAW 190
E +R+F+QDPPW SS+F+ L+ R K + ++R++ +LRRRQ+K ETEAW
Sbjct: 95 ESNKRVFIQDPPWVSSLFMNSLFVRAKQVQGVRREFREIERRRRYAMLRRRQIKAETEAW 154
Query: 191 ERMVDEYKELEAKMIEKRLAPNLPHIKGLFLGWFGPLSEAIEREQKMQRTKKQKAAYAPH 250
E+MV+EY+ELE +M EK+LAPNLP++K L LGWF PL +AIE+EQ + T K +AA+APH
Sbjct: 155 EQMVEEYRELEREMCEKKLAPNLPYVKKLLLGWFEPLRQAIEKEQNAETTVKHRAAFAPH 214
Query: 251 IELLPADKVAVIVMHKMMGLVM-AGHEDRCVQVVQAAVHIGMAIEQEIRIHSFLEKTKNY 309
I+ LPADK+AVIVMHK+MGL+M G E+RCVQVVQAAV IGMA+E E+RIH+FLEKTK
Sbjct: 215 IDSLPADKMAVIVMHKLMGLLMMGGKEERCVQVVQAAVQIGMAVENEVRIHNFLEKTKKL 274
Query: 310 KRKKIIADTEEVLSKEKELLRKRVNSLIKSKRVMEAQKLLKNEETKPWGRDTQAKLGSRL 369
++ A ++E +SKE +LRKRV SLIK RV+E +KL+K+EE + WGRDTQAKLG RL
Sbjct: 275 QKHMTGAQSQEDMSKETMILRKRVKSLIKRNRVVEVRKLMKSEEPESWGRDTQAKLGCRL 334
Query: 370 VELLIETAYVQHPVNPADYSPPDVRPAFRHRFKTILKHPGQKTTKRYGVVECDPLVLEGL 429
+ELL ETAYVQ PV+ + +PPD+RPAFRH FK + PG+ K+YGV+ECDPLV+ G+
Sbjct: 335 LELLTETAYVQRPVDQSADTPPDIRPAFRHVFKIATRDPGKNIVKKYGVIECDPLVVAGV 394
Query: 430 DRSAKHMLIPYVPMLVPPKKWKGYNKGGYLFLPSYVMRTHGSRKQQEALKSVTGNCMKKV 489
DR+ K M+IPYVPMLVPPKKW+GY+KGGYLFLPSY+MRTHGSR+QQ+A++ V M++V
Sbjct: 395 DRTVKQMMIPYVPMLVPPKKWRGYDKGGYLFLPSYLMRTHGSRRQQDAVRGVPTKQMQQV 454
Query: 490 FEALDTLGSTKWRVNKQVLSVLESIWVSGGNIAGLVDRNDVLIPEKPLSEDMTEVQKWKW 549
+EALDTLGSTKWRVNK++L+V+ESIW GGNIAGLVDR DV IPE S+D+ EV+KWKW
Sbjct: 455 YEALDTLGSTKWRVNKRILNVVESIWAGGGNIAGLVDRKDVPIPELSNSDDIMEVKKWKW 514
Query: 550 SVRKAKKINQERHSQRCDTELKLSVARRMKDEEGFYYPHNLDFRGRAYPMHPHLNHLSSD 609
VRK+KKINQE HSQRCDTELKLSVAR++KDEEGFYYPHNLDFRGRAYPMHPHLNHLSSD
Sbjct: 515 KVRKSKKINQELHSQRCDTELKLSVARKLKDEEGFYYPHNLDFRGRAYPMHPHLNHLSSD 574
Query: 610 VCRGVLEFAEGRPLGKSGLRWLKIHLANLFSGGVEKLSHDGRLAFVENHLYEIFDSAENP 669
+CRG+LEFAEGRPLGKSGLRWLKIHLA+L++GGVEKL +D RLAFVENH+++I DSA NP
Sbjct: 575 LCRGILEFAEGRPLGKSGLRWLKIHLASLYAGGVEKLCYDARLAFVENHIHDILDSANNP 634
Query: 670 INGSRWWLTAEDPFQCLAACINLSEALKSSSPHSVISHLPIHQDGSCNGLQHYAALGRNT 729
+NG+RWWL AEDPFQCLAACINLSEALKSSSPH+VISHLPIHQDGSCNGLQHYAALGR++
Sbjct: 635 LNGNRWWLNAEDPFQCLAACINLSEALKSSSPHTVISHLPIHQDGSCNGLQHYAALGRDS 694
Query: 730 LEAAAVNLVAGEKPADVYSEIAVRVHEIMKRDSNKDPSKHPQALLAKILIDQVDRKLVKQ 789
+EAAAVNLVAGEKPADVY+EIA+RV I++ DS KDP+ P ALLAK+LIDQVDRKLVKQ
Sbjct: 695 MEAAAVNLVAGEKPADVYTEIALRVDHIIRGDSIKDPAIDPNALLAKLLIDQVDRKLVKQ 754
Query: 790 TVMTSVYGVTFVGAREQIKRRLEEKGHITDDRQLFAAACYAAKVTLTALGEIFEAARSIM 849
TVMTSVYGVT+VGAREQIKRRLEEKG I DDR LF A+CYAAKVTL ALGE+F+AAR M
Sbjct: 755 TVMTSVYGVTYVGAREQIKRRLEEKGLIDDDRLLFTASCYAAKVTLAALGELFQAARGTM 814
Query: 850 GWLGDCAKVIASENQPVRWTTPLGLPVVQPYCKNERHLIRTSLQVLALQREGNLVKIRKQ 909
WLGDCAKVIA ENQPVRWTTPLGLPVVQPY K +RH+IRTSLQ+LALQREG+ V++RKQ
Sbjct: 815 TWLGDCAKVIALENQPVRWTTPLGLPVVQPYFKTQRHVIRTSLQILALQREGDAVEVRKQ 874
Query: 910 RTAFPPNFVHSLDGSHMMMTAVACRDAGLHFAGL 943
RTAFPPNFVHSLDGSHMMMTAVACRDAGL FAG+
Sbjct: 875 RTAFPPNFVHSLDGSHMMMTAVACRDAGLQFAGV 908
>sp|Q8L6J3|RPO2B_TOBAC DNA-directed RNA polymerase 2B, chloroplastic/mitochondrial
OS=Nicotiana tabacum GN=RPOT2-TOM PE=2 SV=2
Length = 1021
Score = 1104 bits (2856), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 513/777 (66%), Positives = 641/777 (82%), Gaps = 5/777 (0%)
Query: 170 MKKRKFNLLRRRQVKQETEAWERMVDEYKELEAKMIEKRLAPNLPHIKGLFLGWFGPLSE 229
M RK+ L+RRQVK ETEAWE+ EYKEL M E++LAPNLP++K LFLGWF PL +
Sbjct: 178 MGHRKYQTLKRRQVKVETEAWEQAAKEYKELLFDMCEQKLAPNLPYVKSLFLGWFEPLRD 237
Query: 230 AIEREQKMQRTKKQKAAYAPHIELLPADKVAVIVMHKMMGLVMAGHEDRCVQVVQAAVHI 289
I EQ++ K KAAYA ++ LPAD +AVI MHK+MGL+M G + +VVQAA+ I
Sbjct: 238 KIAEEQELCSQGKSKAAYAKYLYQLPADMMAVITMHKLMGLLMTGGDHGTARVVQAALVI 297
Query: 290 GMAIEQEIRIHSFLEKTKNYK--RKKIIADTEEVLSKEKELLRKRVNSLIKSKRVMEAQK 347
G AIEQE+RIH+FLEKTK K + K D E V ++E+E LRK+V +L+K +++ +
Sbjct: 298 GDAIEQEVRIHNFLEKTKKQKAEKDKQKEDGEHV-TQEQEKLRKKVTNLMKKQKLRAVGQ 356
Query: 348 LLK-NEETKPWGRDTQAKLGSRLVELLIETAYVQHPVNPADYSPPDVRPAFRHRFKTILK 406
+++ +++KPWG+D +AK+GSRL+ELL++TAY+Q P N PPD+RPAF H +T+ K
Sbjct: 357 IVRRQDDSKPWGQDAKAKVGSRLIELLLQTAYIQPPANQLAVDPPDIRPAFLHSVRTVAK 416
Query: 407 HPGQKTTKRYGVVECDPLVLEGLDRSAKHMLIPYVPMLVPPKKWKGYNKGGYLFLPSYVM 466
+ ++RYG+++CD LV +GL+R+A+HM+IPY+PMLVPP KW GY+KGG+L+LPSYVM
Sbjct: 417 ET-KSASRRYGIIQCDELVFKGLERTARHMVIPYMPMLVPPVKWTGYDKGGHLYLPSYVM 475
Query: 467 RTHGSRKQQEALKSVTGNCMKKVFEALDTLGSTKWRVNKQVLSVLESIWVSGGNIAGLVD 526
RTHG+R+Q+EA+K + N ++ VFEALDTLGSTKWR+NK+VLSV++ IW GG +A LVD
Sbjct: 476 RTHGARQQREAVKRASRNQLQPVFEALDTLGSTKWRINKRVLSVIDRIWAGGGRLADLVD 535
Query: 527 RNDVLIPEKPLSEDMTEVQKWKWSVRKAKKINQERHSQRCDTELKLSVARRMKDEEGFYY 586
R+D +PE+P +ED KW+W V+ KK N+ERHSQRCD ELKL+VAR+MKDEEGF+Y
Sbjct: 536 RDDAPLPEEPDTEDEALRTKWRWKVKSVKKENRERHSQRCDIELKLAVARKMKDEEGFFY 595
Query: 587 PHNLDFRGRAYPMHPHLNHLSSDVCRGVLEFAEGRPLGKSGLRWLKIHLANLFSGGVEKL 646
PHN+DFRGRAYPMHPHLNHL SD+CRGVL FAEGRPLG+SGLRWLKIHLANLF+GGVEKL
Sbjct: 596 PHNVDFRGRAYPMHPHLNHLGSDICRGVLVFAEGRPLGESGLRWLKIHLANLFAGGVEKL 655
Query: 647 SHDGRLAFVENHLYEIFDSAENPINGSRWWLTAEDPFQCLAACINLSEALKSSSPHSVIS 706
S +GR+AF ENH+ +IFDSA+ P+ G RWWL AEDPFQCLA CINLSEA++SSSP + IS
Sbjct: 656 SLEGRIAFTENHMDDIFDSADKPLEGRRWWLNAEDPFQCLAVCINLSEAVRSSSPETSIS 715
Query: 707 HLPIHQDGSCNGLQHYAALGRNTLEAAAVNLVAGEKPADVYSEIAVRVHEIMKRDSNKDP 766
H+P+HQDGSCNGLQHYAALGR+ L AAAVNLVAGEKPADVYS IA RV +IMKRD+ +DP
Sbjct: 716 HIPVHQDGSCNGLQHYAALGRDELGAAAVNLVAGEKPADVYSGIAARVLDIMKRDAQRDP 775
Query: 767 SKHPQALLAKILIDQVDRKLVKQTVMTSVYGVTFVGAREQIKRRLEEKGHITDDRQLFAA 826
++ P A+ A+ L++QVDRKLVKQTVMTSVYGVT++GAR+QIKRRL+E+G I DD +LF A
Sbjct: 776 AEFPDAVRARALVNQVDRKLVKQTVMTSVYGVTYIGARDQIKRRLKERGAIADDSELFGA 835
Query: 827 ACYAAKVTLTALGEIFEAARSIMGWLGDCAKVIASENQPVRWTTPLGLPVVQPYCKNERH 886
ACYAAKVTLTALGE+FEAARSIM WLG+CAK+IASEN+PVRWTTPLGLPVVQPY K RH
Sbjct: 836 ACYAAKVTLTALGEMFEAARSIMTWLGECAKIIASENEPVRWTTPLGLPVVQPYRKIGRH 895
Query: 887 LIRTSLQVLALQREGNLVKIRKQRTAFPPNFVHSLDGSHMMMTAVACRDAGLHFAGL 943
LI+TSLQ+L LQ+E V +++QRTAFPPNF+HSLDGSHMMMTAVACR AGL+FAG+
Sbjct: 896 LIKTSLQILTLQQETEKVMVKRQRTAFPPNFIHSLDGSHMMMTAVACRRAGLNFAGV 952
>sp|Q8VWF8|RPOT2_NICSY DNA-directed RNA polymerase 2, chloroplastic/mitochondrial
OS=Nicotiana sylvestris GN=RPOT2 PE=2 SV=2
Length = 1020
Score = 1100 bits (2846), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 509/777 (65%), Positives = 640/777 (82%), Gaps = 5/777 (0%)
Query: 170 MKKRKFNLLRRRQVKQETEAWERMVDEYKELEAKMIEKRLAPNLPHIKGLFLGWFGPLSE 229
M RK+ L+RRQVK ETEAWE+ EYKEL M E++LAPNLP++K LFLGWF PL +
Sbjct: 177 MGHRKYQTLKRRQVKVETEAWEQAAKEYKELLFDMCEQKLAPNLPYVKSLFLGWFEPLRD 236
Query: 230 AIEREQKMQRTKKQKAAYAPHIELLPADKVAVIVMHKMMGLVMAGHEDRCVQVVQAAVHI 289
I EQ++ K KAAYA + LPAD +AVI MHK+MGL+M G + +VVQAA+ I
Sbjct: 237 KIAEEQELCSQGKSKAAYAKYFYQLPADMMAVITMHKLMGLLMTGGDHGTARVVQAALVI 296
Query: 290 GMAIEQEIRIHSFLEKTKNYK--RKKIIADTEEVLSKEKELLRKRVNSLIKSKRVMEAQK 347
G AIEQE+RIH+FLEKTK K + K D E V ++E+E LRK+V +L+K +++ +
Sbjct: 297 GDAIEQEVRIHNFLEKTKKQKAEKDKQKEDGEHV-TQEQEKLRKKVTNLMKKQKLRAVGQ 355
Query: 348 LLK-NEETKPWGRDTQAKLGSRLVELLIETAYVQHPVNPADYSPPDVRPAFRHRFKTILK 406
+++ +++KPWG+D +AK+GSRL++LL++TAY+Q P N PPD+RPAF H +T+ K
Sbjct: 356 IVRRQDDSKPWGQDARAKVGSRLIDLLLQTAYIQPPANQLAVDPPDIRPAFVHSVRTVAK 415
Query: 407 HPGQKTTKRYGVVECDPLVLEGLDRSAKHMLIPYVPMLVPPKKWKGYNKGGYLFLPSYVM 466
+ ++RYG+++CD LV +GL+R+A+HM+IPY+PMLVPP KW GY+KGG+L+LPSYVM
Sbjct: 416 ET-KSASRRYGIIQCDELVFKGLERTARHMVIPYMPMLVPPVKWTGYDKGGHLYLPSYVM 474
Query: 467 RTHGSRKQQEALKSVTGNCMKKVFEALDTLGSTKWRVNKQVLSVLESIWVSGGNIAGLVD 526
RTHG+R+Q+EA+K + N ++ VFEALDTLG+TKWR+NK+VLSV++ IW GG +A LVD
Sbjct: 475 RTHGARQQREAVKRASRNQLQPVFEALDTLGNTKWRINKRVLSVVDRIWAGGGRLADLVD 534
Query: 527 RNDVLIPEKPLSEDMTEVQKWKWSVRKAKKINQERHSQRCDTELKLSVARRMKDEEGFYY 586
R+D +PE+P +ED KW+W V+ KK N+ERHSQRCD ELKL+VAR+MKDEE F+Y
Sbjct: 535 RDDAPLPEEPDTEDEALRTKWRWKVKSVKKENRERHSQRCDIELKLAVARKMKDEESFFY 594
Query: 587 PHNLDFRGRAYPMHPHLNHLSSDVCRGVLEFAEGRPLGKSGLRWLKIHLANLFSGGVEKL 646
PHN+DFRGRAYPMHPHLNHL SD+CRGVLEFAEGRPLG+SGLRWLKIHLANLF+GGVEKL
Sbjct: 595 PHNVDFRGRAYPMHPHLNHLGSDICRGVLEFAEGRPLGESGLRWLKIHLANLFAGGVEKL 654
Query: 647 SHDGRLAFVENHLYEIFDSAENPINGSRWWLTAEDPFQCLAACINLSEALKSSSPHSVIS 706
S +GR+ F ENH+ +IFDS++ P+ G RWWL AEDPFQCLA CINLSEA++SSSP + +S
Sbjct: 655 SLEGRIGFTENHMDDIFDSSDKPLEGRRWWLNAEDPFQCLAVCINLSEAVRSSSPETSVS 714
Query: 707 HLPIHQDGSCNGLQHYAALGRNTLEAAAVNLVAGEKPADVYSEIAVRVHEIMKRDSNKDP 766
H+P+HQDGSCNGLQHYAALGR+ L AAAVNLVAGEKPADVYS IA RV +IMKRD+ +DP
Sbjct: 715 HIPVHQDGSCNGLQHYAALGRDKLGAAAVNLVAGEKPADVYSGIAARVLDIMKRDAQRDP 774
Query: 767 SKHPQALLAKILIDQVDRKLVKQTVMTSVYGVTFVGAREQIKRRLEEKGHITDDRQLFAA 826
++ P A+ A++L++QVDRKLVKQTVMTSVYGVT++GAR+QIKRRL+E+G I DD +LF A
Sbjct: 775 AEFPDAVRARVLVNQVDRKLVKQTVMTSVYGVTYIGARDQIKRRLKERGAIADDSELFGA 834
Query: 827 ACYAAKVTLTALGEIFEAARSIMGWLGDCAKVIASENQPVRWTTPLGLPVVQPYCKNERH 886
ACYAAKVTLTALGE+FEAARSIM WLG+CAK+IASEN+PVRWTTPLGLPVVQPY K RH
Sbjct: 835 ACYAAKVTLTALGEMFEAARSIMTWLGECAKIIASENEPVRWTTPLGLPVVQPYRKIGRH 894
Query: 887 LIRTSLQVLALQREGNLVKIRKQRTAFPPNFVHSLDGSHMMMTAVACRDAGLHFAGL 943
LI+TSLQ+L LQRE V +++QRTAFPPNF+HSLDGSHMMMTAVACR AGL+FAG+
Sbjct: 895 LIKTSLQILTLQRETEKVMVKRQRTAFPPNFIHSLDGSHMMMTAVACRRAGLNFAGV 951
>sp|Q9LFV6|RPOT2_ARATH DNA-directed RNA polymerase 2, chloroplastic/mitochondrial
OS=Arabidopsis thaliana GN=RPOT2 PE=1 SV=1
Length = 1011
Score = 1060 bits (2741), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 499/785 (63%), Positives = 630/785 (80%), Gaps = 4/785 (0%)
Query: 161 RIKLQEYREMKKRKFNLLRRRQVKQETEAWERMVDEYKELEAKMIEKRLAPNLPHIKGLF 220
R+K Q+ M + KF L RRQVK ETE WER EY EL M E++LAPNLP++K LF
Sbjct: 160 RMKKQDQFGMGRTKFQNLWRRQVKIETEEWERAAAEYMELLTDMCEQKLAPNLPYVKSLF 219
Query: 221 LGWFGPLSEAIEREQKMQRTKKQKAAYAPHIELLPADKVAVIVMHKMMGLVMAGHEDRCV 280
LGWF PL +AI ++Q++ R K KA YA +++ LPADK++VI MHK+MG +M G ++ CV
Sbjct: 220 LGWFEPLRDAIAKDQELYRLGKSKATYAHYLDQLPADKISVITMHKLMGHLMTGGDNGCV 279
Query: 281 QVVQAAVHIGMAIEQEIRIHSFLEKTKNYKRKKIIADTE-EVLSKEKELLRKRVNSLIKS 339
+VV AA +G AIEQEIRI +FL+K K + E E KE++ LRK+VN LIK
Sbjct: 280 KVVHAACTVGDAIEQEIRICTFLDKKKKGDDNEESGGVENETSMKEQDKLRKKVNELIKK 339
Query: 340 KRVMEAQKLLKNEE-TKPWGRDTQAKLGSRLVELLIETAYVQHPVNPADYSPPDVRPAFR 398
+++ +K+L++ + TKPW D +AK+GSRL+ELL+ TAY+Q P + D PDVRPAF
Sbjct: 340 QKLSAVRKILQSHDYTKPWIADVRAKVGSRLIELLVRTAYIQSPADQQDNDLPDVRPAFV 399
Query: 399 HRFKTILKHPGQKTTKRYGVVECDPLVLEGLDRSAKHMLIPYVPMLVPPKKWKGYNKGGY 458
H FK + + ++YGV+ECDPLV +GL++S ++ ++PY+PMLVPP KW GY+KG Y
Sbjct: 400 HTFK--VAKGSMNSGRKYGVIECDPLVRKGLEKSGRYAVMPYMPMLVPPLKWSGYDKGAY 457
Query: 459 LFLPSYVMRTHGSRKQQEALKSVTGNCMKKVFEALDTLGSTKWRVNKQVLSVLESIWVSG 518
LFL SY+M+THG+++Q+EALKS ++ VFEALDTLGSTKWRVNK+VL+V++ IW SG
Sbjct: 458 LFLTSYIMKTHGAKQQREALKSAPKGQLQPVFEALDTLGSTKWRVNKRVLTVVDRIWSSG 517
Query: 519 GNIAGLVDRNDVLIPEKPLSEDMTEVQKWKWSVRKAKKINQERHSQRCDTELKLSVARRM 578
G +A +VDR+DV +PEKP +ED ++KWKW V+ AKK+N ERHSQRCDTELKLSVAR+M
Sbjct: 518 GCVADMVDRSDVPLPEKPDTEDEGILKKWKWEVKSAKKVNSERHSQRCDTELKLSVARKM 577
Query: 579 KDEEGFYYPHNLDFRGRAYPMHPHLNHLSSDVCRGVLEFAEGRPLGKSGLRWLKIHLANL 638
KDEE FYYPHN+DFRGRAYPM PHLNHL SD+CRGVLEFAEGRP+G SGLRWLKIHLANL
Sbjct: 578 KDEEAFYYPHNMDFRGRAYPMPPHLNHLGSDLCRGVLEFAEGRPMGISGLRWLKIHLANL 637
Query: 639 FSGGVEKLSHDGRLAFVENHLYEIFDSAENPINGSRWWLTAEDPFQCLAACINLSEALKS 698
++GGV+KLS DGRLAF ENHL +IFDSA+ P+ GSRWWL AEDPFQCLA CI+L+EAL+S
Sbjct: 638 YAGGVDKLSLDGRLAFTENHLDDIFDSADRPLEGSRWWLQAEDPFQCLAVCISLTEALRS 697
Query: 699 SSPHSVISHLPIHQDGSCNGLQHYAALGRNTLEAAAVNLVAGEKPADVYSEIAVRVHEIM 758
SP +V+SH+PIHQDGSCNGLQHYAALGR+TL A AVNLVAGEKPADVYS IA RV +IM
Sbjct: 698 PSPETVLSHIPIHQDGSCNGLQHYAALGRDTLGAEAVNLVAGEKPADVYSGIATRVLDIM 757
Query: 759 KRDSNKDPSKHPQALLAKILIDQVDRKLVKQTVMTSVYGVTFVGAREQIKRRLEEKGHIT 818
+RD+++DP P+AL A+ L++QVDRKLVKQTVMTSVYGVT++GAR+QIKRRL+E+
Sbjct: 758 RRDADRDPEVFPEALRARKLLNQVDRKLVKQTVMTSVYGVTYIGARDQIKRRLKERSDFG 817
Query: 819 DDRQLFAAACYAAKVTLTALGEIFEAARSIMGWLGDCAKVIASENQPVRWTTPLGLPVVQ 878
D++++F AACYAAKVTL A+ E+F+AAR+IM W G+CAK+IASEN+ VRWTTPLGLPVVQ
Sbjct: 818 DEKEVFGAACYAAKVTLAAIDEMFQAARAIMRWFGECAKIIASENETVRWTTPLGLPVVQ 877
Query: 879 PYCKNERHLIRTSLQVLALQREGNLVKIRKQRTAFPPNFVHSLDGSHMMMTAVACRDAGL 938
PY + L++TSLQ L+LQ E + V +R+QRTAFPPNF+HSLDGSHMMMTAVAC+ AG+
Sbjct: 878 PYHQMGTKLVKTSLQTLSLQHETDQVIVRRQRTAFPPNFIHSLDGSHMMMTAVACKRAGV 937
Query: 939 HFAGL 943
FAG+
Sbjct: 938 CFAGV 942
>sp|Q93Y94|RPOT1_NICSY DNA-directed RNA polymerase 1, mitochondrial OS=Nicotiana
sylvestris GN=RPOT1 PE=2 SV=1
Length = 1002
Score = 1056 bits (2730), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 505/774 (65%), Positives = 632/774 (81%), Gaps = 9/774 (1%)
Query: 174 KFNLLRRRQVKQETEAWERMVDEYKELEAKMIEKRLAPNLPHIKGLFLGWFGPLSEAIER 233
K+NLLRRRQ+K ETEAWE EY+EL M E++LAPNLP++K LFLGWF PL +AI
Sbjct: 165 KYNLLRRRQIKVETEAWEEAAKEYQELLMDMCEQKLAPNLPYMKSLFLGWFEPLRDAIAA 224
Query: 234 EQKMQRTKKQKAAYAPHIELLPADKVAVIVMHKMMGLVMAGHEDRCVQVVQAAVHIGMAI 293
EQK+ K + AYAP + LPA+ +AVI MHK+MGL+M G +VVQAA HIG AI
Sbjct: 225 EQKLCDEGKNRGAYAPFFDQLPAEMMAVITMHKLMGLLMTGGGTGSARVVQAASHIGEAI 284
Query: 294 EQEIRIHSFLEKTKNYKRKKIIADTEEV---LSKEKELLRKRVNSLIKSKRVMEAQKLLK 350
E E RIH FLEKTK K + D E+ + KE+E +RK+V L+K +++ + +K++K
Sbjct: 285 EHEARIHRFLEKTK--KSNALSGDLEDTPGDIMKERERVRKKVKILMKKQKLQQVRKIVK 342
Query: 351 NEET-KPWGRDTQAKLGSRLVELLIETAYVQHPVNPADYSPPDVRPAFRHRFKTILKHPG 409
++ KPWG+D K+G RL+++L+ETAY+Q P + D PPD+RPAF H KT+
Sbjct: 343 QQDDEKPWGQDNLVKVGCRLIQILMETAYIQPPNDQLDDCPPDIRPAFVHTLKTV---ET 399
Query: 410 QKTTKRYGVVECDPLVLEGLDRSAKHMLIPYVPMLVPPKKWKGYNKGGYLFLPSYVMRTH 469
K ++RYGV++CDPLV +GLD++A+HM+IPY+PMLVPP+ W GY+KG YLFLPSY+MRTH
Sbjct: 400 MKGSRRYGVIQCDPLVRKGLDKTARHMVIPYMPMLVPPQSWLGYDKGAYLFLPSYIMRTH 459
Query: 470 GSRKQQEALKSVTGNCMKKVFEALDTLGSTKWRVNKQVLSVLESIWVSGGNIAGLVDRND 529
G+++Q+EA+K V ++ VF+ALDTLG+TKWR+N++VL +++ IW SGG +A LVDR D
Sbjct: 460 GAKQQREAVKRVPKKQLEPVFQALDTLGNTKWRLNRKVLGIVDRIWASGGRLADLVDRED 519
Query: 530 VLIPEKPLSEDMTEVQKWKWSVRKAKKINQERHSQRCDTELKLSVARRMKDEEGFYYPHN 589
V +PE+P +ED +++KWKW V+ KK N ERHSQRCD ELKL+VAR+MKDE+GFYYPHN
Sbjct: 520 VPLPEEPDAEDEAQIRKWKWKVKGVKKENCERHSQRCDIELKLAVARKMKDEDGFYYPHN 579
Query: 590 LDFRGRAYPMHPHLNHLSSDVCRGVLEFAEGRPLGKSGLRWLKIHLANLFSGGVEKLSHD 649
LDFRGRAYPMHP+LNHL SD+CRG+LEFAEGRPLGKSGLRWLKIHLAN++ GGV+KLS++
Sbjct: 580 LDFRGRAYPMHPYLNHLGSDLCRGILEFAEGRPLGKSGLRWLKIHLANVYGGGVDKLSYE 639
Query: 650 GRLAFVENHLYEIFDSAENPINGSRWWLTAEDPFQCLAACINLSEALKSSSPHSVISHLP 709
GR+AF ENH+ +IFDSAE P+ G RWWL AEDPFQCLA CIN++EAL+S SP + IS++P
Sbjct: 640 GRVAFSENHVEDIFDSAERPLEGKRWWLGAEDPFQCLATCINIAEALRSPSPETAISYMP 699
Query: 710 IHQDGSCNGLQHYAALGRNTLEAAAVNLVAGEKPADVYSEIAVRVHEIMKRDSNKDPSKH 769
IHQDGSCNGLQHYAALGR+TL AAAVNLVAG+KPADVYS IA RV +IMKRD+ KDP+
Sbjct: 700 IHQDGSCNGLQHYAALGRDTLGAAAVNLVAGDKPADVYSGIAARVLDIMKRDAAKDPAND 759
Query: 770 PQALLAKILIDQVDRKLVKQTVMTSVYGVTFVGAREQIKRRLEEKGHITDDRQLFAAACY 829
P + A++LI+QVDRKLVKQTVMTSVYGVT++GAR+QIKRRL+E+G I DD +LFAAACY
Sbjct: 760 PNVMRARLLINQVDRKLVKQTVMTSVYGVTYIGARDQIKRRLKERGVIEDDNELFAAACY 819
Query: 830 AAKVTLTALGEIFEAARSIMGWLGDCAKVIASENQPVRWTTPLGLPVVQPYCKNERHLIR 889
AAK TLTALGE+FEAARSIM WLGDCAK+IA EN PVRWTTPLGLPVVQPY K RHLI+
Sbjct: 820 AAKTTLTALGEMFEAARSIMSWLGDCAKIIAMENHPVRWTTPLGLPVVQPYRKLGRHLIK 879
Query: 890 TSLQVLALQREGNLVKIRKQRTAFPPNFVHSLDGSHMMMTAVACRDAGLHFAGL 943
TSLQ+L LQRE + V +++QRTAFPPNFVHSLDGSHMMMTA+AC+++GL FAG+
Sbjct: 880 TSLQILTLQRETDKVMVKRQRTAFPPNFVHSLDGSHMMMTAIACKESGLSFAGV 933
>sp|Q8L6J5|RPO1B_TOBAC DNA-directed RNA polymerase 1B, mitochondrial OS=Nicotiana tabacum
GN=RPOT1-TOM PE=2 SV=2
Length = 1002
Score = 1054 bits (2725), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 506/774 (65%), Positives = 629/774 (81%), Gaps = 9/774 (1%)
Query: 174 KFNLLRRRQVKQETEAWERMVDEYKELEAKMIEKRLAPNLPHIKGLFLGWFGPLSEAIER 233
K+N LRRRQ+K ETEAWE EY+EL M E++LAPNLP++K LFLGWF PL +AI
Sbjct: 165 KYNFLRRRQIKVETEAWEEAAKEYQELLMDMCEQKLAPNLPYMKSLFLGWFEPLRDAIAA 224
Query: 234 EQKMQRTKKQKAAYAPHIELLPADKVAVIVMHKMMGLVMAGHEDRCVQVVQAAVHIGMAI 293
EQK+ K + AYAP + LPA+ +AVI MHK+MGL+M G +VVQAA +IG AI
Sbjct: 225 EQKLCDEGKNRGAYAPFFDQLPAEMMAVITMHKLMGLLMTGGGTGSARVVQAASYIGEAI 284
Query: 294 EQEIRIHSFLEKTKNYKRKKIIADTEEV---LSKEKELLRKRVNSLIKSKRVMEAQKLLK 350
E E RIH FLEKTK K + D EE + KE+E LRK+V L+K +++ + +K++K
Sbjct: 285 EHEARIHRFLEKTK--KSNALSGDLEETPGDMMKERERLRKKVKILMKKQKLRQVRKIVK 342
Query: 351 NEET-KPWGRDTQAKLGSRLVELLIETAYVQHPVNPADYSPPDVRPAFRHRFKTILKHPG 409
++ KPWG+D K+G RL+++L+ETAY+Q P + D PPD+RPAF H KT+
Sbjct: 343 QQDDEKPWGQDNLVKVGCRLIQILMETAYIQPPNDQLDDGPPDIRPAFVHTLKTV---ET 399
Query: 410 QKTTKRYGVVECDPLVLEGLDRSAKHMLIPYVPMLVPPKKWKGYNKGGYLFLPSYVMRTH 469
K ++RYGV++CDPLV +GLD++A+HM+IPY+PMLVPP+ W GY+KGGYLFLPSY+MRTH
Sbjct: 400 MKGSRRYGVIQCDPLVRKGLDKTARHMVIPYMPMLVPPQSWLGYDKGGYLFLPSYIMRTH 459
Query: 470 GSRKQQEALKSVTGNCMKKVFEALDTLGSTKWRVNKQVLSVLESIWVSGGNIAGLVDRND 529
G+++Q+EA+K V ++ VF+ALDTLG+TKWRVN++VL +++ IW SGG +A LVDR D
Sbjct: 460 GAKQQREAVKRVPKKQLEPVFQALDTLGNTKWRVNRKVLGIVDRIWASGGRLADLVDRED 519
Query: 530 VLIPEKPLSEDMTEVQKWKWSVRKAKKINQERHSQRCDTELKLSVARRMKDEEGFYYPHN 589
V +PE P +ED E++KWKW V+ KK N ERHSQRCD ELKL+VAR+MKDE+GFYYPHN
Sbjct: 520 VPLPEAPDTEDEAEIRKWKWKVKGVKKENCERHSQRCDIELKLAVARKMKDEDGFYYPHN 579
Query: 590 LDFRGRAYPMHPHLNHLSSDVCRGVLEFAEGRPLGKSGLRWLKIHLANLFSGGVEKLSHD 649
LDFRGRAYPMHP+LNHL SD+CRG+LEFAEGRPLG SGLRWLKIHLAN++ GGV+KLS++
Sbjct: 580 LDFRGRAYPMHPYLNHLGSDLCRGILEFAEGRPLGTSGLRWLKIHLANVYGGGVDKLSYE 639
Query: 650 GRLAFVENHLYEIFDSAENPINGSRWWLTAEDPFQCLAACINLSEALKSSSPHSVISHLP 709
GR+AF ENHL +IFDSAE P+ G RWWL AEDPFQCLA CIN++EAL+S SP + IS++P
Sbjct: 640 GRVAFSENHLEDIFDSAERPLEGKRWWLGAEDPFQCLATCINIAEALRSPSPETAISYMP 699
Query: 710 IHQDGSCNGLQHYAALGRNTLEAAAVNLVAGEKPADVYSEIAVRVHEIMKRDSNKDPSKH 769
IHQDGSCNGLQHYAALGR+ L AAAVNLVAG+KPADVYS IA RV +IMKRD+ KDP+
Sbjct: 700 IHQDGSCNGLQHYAALGRDKLGAAAVNLVAGDKPADVYSGIAARVLDIMKRDAAKDPAND 759
Query: 770 PQALLAKILIDQVDRKLVKQTVMTSVYGVTFVGAREQIKRRLEEKGHITDDRQLFAAACY 829
P + A++LI+QVDRKLVKQTVMTSVYGVT++GAR+QIK+RL+E+G I DD +LFAAACY
Sbjct: 760 PNVMRARLLINQVDRKLVKQTVMTSVYGVTYIGARDQIKKRLKERGVIEDDNELFAAACY 819
Query: 830 AAKVTLTALGEIFEAARSIMGWLGDCAKVIASENQPVRWTTPLGLPVVQPYCKNERHLIR 889
AAK TLTALGE+FEAARSIM WLGDCAK+IA EN PVRWTTPLGLPVVQPY K RHLI+
Sbjct: 820 AAKTTLTALGEMFEAARSIMSWLGDCAKIIAMENHPVRWTTPLGLPVVQPYRKLGRHLIK 879
Query: 890 TSLQVLALQREGNLVKIRKQRTAFPPNFVHSLDGSHMMMTAVACRDAGLHFAGL 943
TSLQ+L LQRE + V +++QRTAFPPNFVHSLDGSHMMMTA+AC+++GL FAG+
Sbjct: 880 TSLQILTLQRETDKVMVKRQRTAFPPNFVHSLDGSHMMMTAIACKESGLSFAGV 933
>sp|P92969|RPOT1_ARATH DNA-directed RNA polymerase 1, mitochondrial OS=Arabidopsis
thaliana GN=RPOT1 PE=2 SV=1
Length = 976
Score = 1024 bits (2647), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 476/782 (60%), Positives = 610/782 (78%), Gaps = 9/782 (1%)
Query: 170 MKKRKFNLLRRRQVKQETEAWERMVDEYKELEAKMIEKRLAPNLPHIKGLFLGWFGPLSE 229
M +KF +L++RQVK ETE WER E +E+ A M E++LAPNLP++K LFLGWF P+
Sbjct: 127 MGAQKFYMLKQRQVKMETEEWERAARECREILADMCEQKLAPNLPYMKSLFLGWFEPVRN 186
Query: 230 AIEREQKMQRTKKQKAAYAPHIELLPADKVAVIVMHKMMGLVMAGHED-RCVQVVQAAVH 288
AI+ + + KK K YAP +E LPADK+AVI MHKMMGL+M E V++V AA
Sbjct: 187 AIQDDLDTFKIKKGKIPYAPFMEQLPADKMAVITMHKMMGLLMTNAEGVGIVKLVNAATQ 246
Query: 289 IGMAIEQEIRIHSFLEKT--KNYKRKKIIAD----TEEVLSKEKELLRKRVNSLIKSKRV 342
IG A+EQE+RI+SFL+K KN K I + +EE+++KE E RK+V L++ ++
Sbjct: 247 IGEAVEQEVRINSFLQKKNKKNATDKTINTEAENVSEEIVAKETEKARKQVTVLMEKNKL 306
Query: 343 MEAQKLL-KNEETKPWGRDTQAKLGSRLVELLIETAYVQHPVNPADYSPPDVRPAFRHRF 401
+ + L+ K++ KPWG++ Q K+G+RL++LL+E AY+Q P D PPD+RPAF+ F
Sbjct: 307 RQVKALVRKHDSFKPWGQEAQVKVGARLIQLLMENAYIQPPAEQFDDGPPDIRPAFKQNF 366
Query: 402 KTILKHPGQKTTKRYGVVECDPLVLEGLDRSAKHMLIPYVPMLVPPKKWKGYNKGGYLFL 461
+T+ KT++RYG +ECDPLVL+GLD+SA+HM+IPY+PML+PP+ W GY++G + FL
Sbjct: 367 RTVTLE-NTKTSRRYGCIECDPLVLKGLDKSARHMVIPYLPMLIPPQNWTGYDQGAHFFL 425
Query: 462 PSYVMRTHGSRKQQEALKSVTGNCMKKVFEALDTLGSTKWRVNKQVLSVLESIWVSGGNI 521
PSYVMRTHG+++Q+ +K ++ V+EALDTLG+TKW++NK+VLS+++ IW +GG I
Sbjct: 426 PSYVMRTHGAKQQRTVMKRTPKEQLEPVYEALDTLGNTKWKINKKVLSLVDRIWANGGRI 485
Query: 522 AGLVDRNDVLIPEKPLSEDMTEVQKWKWSVRKAKKINQERHSQRCDTELKLSVARRMKDE 581
GLVDR DV IPE+P ED + + W+W +KA K N ERHSQRCD ELKL VAR+MKDE
Sbjct: 486 GGLVDREDVPIPEEPEREDQEKFKNWRWESKKAIKQNNERHSQRCDIELKLEVARKMKDE 545
Query: 582 EGFYYPHNLDFRGRAYPMHPHLNHLSSDVCRGVLEFAEGRPLGKSGLRWLKIHLANLFSG 641
EGFYYPHN+DFRGRAYP+HP+LNHL SD+CRG+LEF EG+PLGKSGLRWLKIH+ANL++G
Sbjct: 546 EGFYYPHNVDFRGRAYPIHPYLNHLGSDLCRGILEFCEGKPLGKSGLRWLKIHIANLYAG 605
Query: 642 GVEKLSHDGRLAFVENHLYEIFDSAENPINGSRWWLTAEDPFQCLAACINLSEALKSSSP 701
GV+KL+++ R+AF E+HL +IFDS++ P+ G RWWL AEDPFQCLAACINLSEAL+S P
Sbjct: 606 GVDKLAYEDRIAFTESHLEDIFDSSDRPLEGKRWWLNAEDPFQCLAACINLSEALRSPFP 665
Query: 702 HSVISHLPIHQDGSCNGLQHYAALGRNTLEAAAVNLVAGEKPADVYSEIAVRVHEIMKRD 761
+ ISH+PIHQDGSCNGLQHYAALGR+ L A AVNLV GEKPADVY+EIA RV +IM++D
Sbjct: 666 EAAISHIPIHQDGSCNGLQHYAALGRDKLGADAVNLVTGEKPADVYTEIAARVLKIMQQD 725
Query: 762 SNKDPSKHPQALLAKILIDQVDRKLVKQTVMTSVYGVTFVGAREQIKRRLEEKGHITDDR 821
+ +DP P A AK+++DQVDRKLVKQTVMTSVYGVT+ GAR+QIK+RL+E+G DD
Sbjct: 726 AEEDPETFPNATYAKLMLDQVDRKLVKQTVMTSVYGVTYSGARDQIKKRLKERGTFEDDS 785
Query: 822 QLFAAACYAAKVTLTALGEIFEAARSIMGWLGDCAKVIASENQPVRWTTPLGLPVVQPYC 881
F A+CYAAK+TL AL E+FEAAR+I W GDCAK+IASEN V WTTPLGLPVVQPY
Sbjct: 786 LTFHASCYAAKITLKALEEMFEAARAIKSWFGDCAKIIASENNAVCWTTPLGLPVVQPYR 845
Query: 882 KNERHLIRTSLQVLALQREGNLVKIRKQRTAFPPNFVHSLDGSHMMMTAVACRDAGLHFA 941
K RHL++T+LQVL L RE + V R+Q TAF PNF+HSLDGSHMMMTAVAC AGL FA
Sbjct: 846 KPGRHLVKTTLQVLTLSRETDKVMARRQMTAFAPNFIHSLDGSHMMMTAVACNRAGLSFA 905
Query: 942 GL 943
G+
Sbjct: 906 GV 907
>sp|P13433|RPOM_YEAST DNA-directed RNA polymerase, mitochondrial OS=Saccharomyces
cerevisiae (strain ATCC 204508 / S288c) GN=RPO41 PE=1
SV=2
Length = 1351
Score = 476 bits (1225), Expect = e-133, Method: Compositional matrix adjust.
Identities = 302/817 (36%), Positives = 435/817 (53%), Gaps = 97/817 (11%)
Query: 177 LLRRRQVKQETEAWERMVDEYKELEAKMIEKRLAPNL--------PHIKGLFLGWFGPLS 228
+L R + E W+ +E K IEK L L P +K LS
Sbjct: 418 VLENRATEAARERWKHDFEEAKARGDISIEKNLNVKLWKWYNEMLPLVKEEINHCRSLLS 477
Query: 229 EAIEREQKMQRTKKQKAAYAPHIELLPADKVAVIVMHKMMGLVMAGHEDRCVQVVQAAVH 288
E + ++ + + + Y P++ L+ K+ VI + +++ L G ++ +A +
Sbjct: 478 EKLSDKKGLNKVDTNRLGYGPYLTLIDPGKMCVITILELLKLNSTGGVIEGMRTARAVIS 537
Query: 289 IGMAIEQEIRIHSFLEKTKNYKRKKIIADTEEVLSKEKELLRKRVNSLIKSKRVMEAQKL 348
+G AIE E R +E+VL E + R VN K+ E +KL
Sbjct: 538 VGKAIEMEFR-------------------SEQVLKSESQAFRD-VN-----KKSPEFKKL 572
Query: 349 LKN----------EETKP-WGRDTQAKLGSRLVELLIETAYVQ----HPVNPADYSPPDV 393
++N E++K W + +A++GS L+ +LI+ A V PV A
Sbjct: 573 VQNAKSVFRSSQIEQSKILWPQSIRARIGSVLISMLIQVAKVSVQGVDPVTKAKVHGE-- 630
Query: 394 RPAFRHRFKTILKHPGQKTTKRYGVVECDPLVLEGLD--RSAKHMLIPYVPMLVPPKKWK 451
PAF H ++ H G K GV++ ++ L+ R + +PMLV PK W
Sbjct: 631 APAFAHGYQY---HNGSK----LGVLKIHKTLIRQLNGERLIASVQPQLLPMLVEPKPWV 683
Query: 452 GYNKGGYLFLPSYVMRTHGSRKQQEALKSVTGNC-MKKVFEALDTLGSTKWRVNKQVLSV 510
+ GGY + S ++RT S +Q LK+ + N + +V++ L+ LG T W VN++V V
Sbjct: 684 NWRSGGYHYTQSTLLRTKDSPEQVAYLKAASDNGDIDRVYDGLNVLGRTPWTVNRKVFDV 743
Query: 511 LESIWVSGGNIAGLVDRND--VLIPEKPLSEDMTEVQKWKWSVRK-AKKINQERHSQRCD 567
+ +W G + D VL P P + D + ++ WK V+ A K + +R S RCD
Sbjct: 744 VSQVWNKGEGFLDIPGAQDEMVLPPAPPKNSDPSILRAWKLQVKTIANKFSSDR-SNRCD 802
Query: 568 TELKLSVARRMKDEEGFYYPHNLDFRGRAYPMHPHLNHLSSDVCRGVLEFAEGRPLGKSG 627
T KL +AR E+ Y+PHNLDFRGRAYP+ PH NHL +D+ RG+L F G+ LG SG
Sbjct: 803 TNYKLEIARAFLGEK-LYFPHNLDFRGRAYPLSPHFNHLGNDMSRGLLIFWHGKKLGPSG 861
Query: 628 LRWLKIHLANLFSGGVEKLSHDGRLAFVENHLYEIFDSAENPINGSRWWLTAEDPFQCLA 687
L+WLKIHL+NLF G +KL R+AF E+HL +I DSAENP+ G RWW TA+ P+Q LA
Sbjct: 862 LKWLKIHLSNLF--GFDKLPLKDRVAFTESHLQDIKDSAENPLTGDRWWTTADKPWQALA 919
Query: 688 ACINLSEALKSSSPHSVISHLPIHQDGSCNGLQHYAALGRNTLEAAAVNLVAGEKPADVY 747
C L+E +K +P ISH P+HQDG+CNGLQHYAALG + A VNLV +KP DVY
Sbjct: 920 TCFELNEVMKMDNPEEFISHQPVHQDGTCNGLQHYAALGGDVEGATQVNLVPSDKPQDVY 979
Query: 748 SEIAVRVHEIMKRDSNKDPSKHPQALLAKILIDQVDRKLVKQTVMTSVYGVTFVGAREQI 807
+ +A V + ++ + K AKIL D++ RK+VKQTVMT+VYGVT+VGA QI
Sbjct: 980 AHVARLVQKRLEIAAEKGDEN------AKILKDKITRKVVKQTVMTNVYGVTYVGATFQI 1033
Query: 808 KRRLEEKGHITDDR-QLFAAACYAAKVTLTALGEIFEAARSIMGWLGDCAKVIASE---- 862
++L I DDR + + Y K +A+ E+F +A I WLG+ AK I+
Sbjct: 1034 AKQLSP---IFDDRKESLDFSKYLTKHVFSAIRELFHSAHLIQDWLGESAKRISKSIRLD 1090
Query: 863 ---------NQP-----VRWTTPLGLPVVQPYCKNERHLIRTSLQVLALQR--EGNLVKI 906
N+P V WTTPLGLP+VQPY + + + T+LQ + + N V
Sbjct: 1091 VDEKSFKNGNKPDFMSSVIWTTPLGLPIVQPYREESKKQVETNLQTVFISDPFAVNPVNA 1150
Query: 907 RKQRTAFPPNFVHSLDGSHMMMTAVACRDAGLHFAGL 943
R+Q+ PPNF+HSLD SHM+++A C GL FA +
Sbjct: 1151 RRQKAGLPPNFIHSLDASHMLLSAAECGKQGLDFASV 1187
>sp|O13993|RPOM_SCHPO DNA-directed RNA polymerase, mitochondrial OS=Schizosaccharomyces
pombe (strain 972 / ATCC 24843) GN=rpo41 PE=3 SV=2
Length = 1154
Score = 439 bits (1129), Expect = e-122, Method: Compositional matrix adjust.
Identities = 272/771 (35%), Positives = 404/771 (52%), Gaps = 75/771 (9%)
Query: 215 HIKGLFLGWFGPLSEAIEREQKM---------QRTKKQKAAYAPHIELLPADKVAVIVMH 265
++ LF W+ L + + E + K + Y P ++LL + K+A + +
Sbjct: 322 NVSSLFYSWYVQLEQLFKEEISLIDDLALNESLDKKNDRLIYGPFLKLLSSKKLAALTIM 381
Query: 266 KMMGLVMAGHEDRCVQVVQAAVHIGMAIEQEIRIHSFL--EKTKNYKRKKIIADTEEVLS 323
++ L DR +V +G + E+E EK K+YK KK
Sbjct: 382 EVAQLSTNPRYDRGARVTTLLGGLGRSFEREFLSEQIQRQEKNKSYKDKK---------- 431
Query: 324 KEKELLR--KRVNSLIKSKRVMEAQ-KLLKNEETKPWGRDTQAKLGSRLVELLIETAYVQ 380
+ KEL ++ +K+ R+ + ++ N W K+GS + LL+ A ++
Sbjct: 432 RLKELFNDPRKFRQAVKNLRLSNTRDNIVLNPSVDSWPSAIVMKVGSVALCLLLSVAKIE 491
Query: 381 HPVNPADYSPPDVR----PAFRHRFKTILKHPGQKTTKRYGVVECDPLVLEGLDRSAKHM 436
V D S + AF H ++ G+K VE L+ +++ H+
Sbjct: 492 --VTAKDLSTGGILKQEVAAFVHTYQY---SNGRKVGMIVPHVEFYKLLSRDIEKP--HL 544
Query: 437 LIPYVPMLVPPKKWKGYNKGGYLFLPSYVMRTHGSRKQQEALKSVTGNC-MKKVFEALDT 495
+PMLV PK W + GGY + ++R G+ +Q + L + N + ++F+A+ +
Sbjct: 545 HPQLLPMLVTPKPWTSWIDGGYYYSRQPLVRLKGALEQVDYLMKASENGQLDELFKAVSS 604
Query: 496 LGSTKWRVNKQVLSVLESIWVSGGNIAGLVDRN-DVLIPEKPLSEDMTEVQKWKWSVRKA 554
LG WR+N+++ +VL IW SG + R +P P + K W R+
Sbjct: 605 LGKVSWRINQRLFNVLIRIWNSGEKFLSIPPREVKCDMPPYP-KNSINPRDKVIWHTRRK 663
Query: 555 K--KINQERHSQRCDTELKLSVARRMKDEEGFYYPHNLDFRGRAYPMHPHLNHLSSDVCR 612
+ + HSQRCD KL +AR +E+ FY+PH+LDFRGRAYP+ HL+H+S+DVCR
Sbjct: 664 ELAALKTGAHSQRCDFNYKLEIARAFLNEK-FYFPHSLDFRGRAYPLSSHLHHVSNDVCR 722
Query: 613 GVLEFAEGRPLGKSGLRWLKIHLANLFSGGVEKLSHDGRLAFVENHLYEIFDSAENPING 672
G+LEF+ G+PLG GL WLK+HLANLF G+ K R AFV++++ E+FDSA+ P++G
Sbjct: 723 GLLEFSTGKPLGPKGLNWLKVHLANLF--GISKKDFATRQAFVDDNMQEVFDSADRPLDG 780
Query: 673 SRWWLTAEDPFQCLAACINLSEALKSSSPHSVISHLPIHQDGSCNGLQHYAALGRNTLEA 732
++WW A+DPFQ LAAC ++EA++S S ISH+PI QDG+CNGLQHYAALG + A
Sbjct: 781 NKWWSKADDPFQALAACFEIAEAVRSGDHESYISHIPIQQDGTCNGLQHYAALGGDIEGA 840
Query: 733 AAVNLVAGEKPADVYSEIAVRVHEIMKRDSNKDPSKHPQALLAKILIDQVDRKLVKQTVM 792
VNL + P+DVY +A V +K+D+ +A L D+V R +VK TVM
Sbjct: 841 KQVNLWPSDHPSDVYEAVAEIVRGFLKKDAEAGDE------MANFLKDKVTRSVVKPTVM 894
Query: 793 TSVYGVTFVGAREQIKRRLE-----EKGHITDDRQLFAAACYAAKVTLTALGEIFEAARS 847
T+VYGVT+VGAR+QI +LE EK + D A Y K AL +F A
Sbjct: 895 TNVYGVTYVGARKQISEKLENIDGMEKLKVAD------YANYLTKKVFEALRSLFTQAHE 948
Query: 848 IMGWLGDCAKVIA-------------SENQPVRWTTPLGLPVVQPYCKNERHLIRTSLQV 894
I WL C +I E PV WTT L LP+VQPY + IRT+LQ
Sbjct: 949 IQDWLSACCNLITHSLPADYIKEGIKDELTPVVWTTLLNLPIVQPYRNYKSRQIRTNLQT 1008
Query: 895 LALQREGNLVKIR--KQRTAFPPNFVHSLDGSHMMMTAVACRDAGLHFAGL 943
+ ++ ++ KQ TAFPPNF+HSLD +HM MT + C + ++FA +
Sbjct: 1009 VFIEERDRTATVQPHKQATAFPPNFIHSLDATHMFMTCLKCSEQNINFAAV 1059
>sp|Q8L6J2|RPO2A_TOBAC DNA-directed RNA polymerase 2A (Fragment) OS=Nicotiana tabacum
GN=RPOT2-SYL PE=3 SV=1
Length = 332
Score = 439 bits (1129), Expect = e-122, Method: Compositional matrix adjust.
Identities = 202/263 (76%), Positives = 237/263 (90%)
Query: 681 DPFQCLAACINLSEALKSSSPHSVISHLPIHQDGSCNGLQHYAALGRNTLEAAAVNLVAG 740
DPFQCLA CINLSEA++SSSP + +SH+P+HQDGSCNGLQHYAALGR+ L AAAVNLVAG
Sbjct: 1 DPFQCLAVCINLSEAVRSSSPETSVSHIPVHQDGSCNGLQHYAALGRDKLGAAAVNLVAG 60
Query: 741 EKPADVYSEIAVRVHEIMKRDSNKDPSKHPQALLAKILIDQVDRKLVKQTVMTSVYGVTF 800
EKPADVYS IA RV +IMKRD+ +DP++ P A+ A++L++QVDRKLVKQTVMTSVYGVT+
Sbjct: 61 EKPADVYSGIAARVLDIMKRDAQRDPAEFPDAVRARVLVNQVDRKLVKQTVMTSVYGVTY 120
Query: 801 VGAREQIKRRLEEKGHITDDRQLFAAACYAAKVTLTALGEIFEAARSIMGWLGDCAKVIA 860
+GAR+QIKRRL+E+G I DD +LF AACYAAKVTLTALGE+FEAARSIM WLG+CAK+IA
Sbjct: 121 IGARDQIKRRLKERGAIADDSELFGAACYAAKVTLTALGEMFEAARSIMTWLGECAKIIA 180
Query: 861 SENQPVRWTTPLGLPVVQPYCKNERHLIRTSLQVLALQREGNLVKIRKQRTAFPPNFVHS 920
SEN+PVRWTTPLGLPVVQPY K RHLI+TSLQ+L LQRE V +++QRTAFPPNF+HS
Sbjct: 181 SENEPVRWTTPLGLPVVQPYRKIGRHLIKTSLQILTLQRETEKVMVKRQRTAFPPNFIHS 240
Query: 921 LDGSHMMMTAVACRDAGLHFAGL 943
LDGSHMMMTAVACR AGL+FAG+
Sbjct: 241 LDGSHMMMTAVACRRAGLNFAGV 263
>sp|P38671|RPOM_NEUCR DNA-directed RNA polymerase, mitochondrial OS=Neurospora crassa
(strain ATCC 24698 / 74-OR23-1A / CBS 708.71 / DSM 1257 /
FGSC 987) GN=cyt-5 PE=3 SV=2
Length = 1423
Score = 437 bits (1125), Expect = e-121, Method: Compositional matrix adjust.
Identities = 268/784 (34%), Positives = 410/784 (52%), Gaps = 96/784 (12%)
Query: 231 IEREQKMQRTKKQK-----AAYAPHIELLPADKVAVIVMHKMMGLVMAGHEDRCVQVVQA 285
+E E+ +KK K Y P I +++A + + + + G + +
Sbjct: 420 VEVEKSEMVSKKNKDDLDRCIYGPFIRQSNPERLAAVTIISTLSSLAMGGAHKGSTIASL 479
Query: 286 AVHIGMAIEQEIRIHSFLEKTKNYKRKKIIADTEEVLSKEKELLR-KRVNSLIKSKRVME 344
HI E++IR+ +K + K+ + + + +LR K + S + +
Sbjct: 480 ITHIAKFAEEDIRV----QKAEALISKRNLRKAKSKQHNPRSVLRFKNSTASAGSSDMAD 535
Query: 345 AQKLLKNEETKPWGRDTQAKLGSRLVELLIETAYV----QHPVNPADYSPPDVRPAFRHR 400
+ + + + W + K+G+ L+ L++TA + + PV + +PAF H
Sbjct: 536 SNNVAVEMDDEAWTTTIRTKVGAALLSALLDTAKITLVREDPVTKTLIT--QNQPAFSHV 593
Query: 401 FKTILKHPGQKTTKRYGVVECDPLVLEGLDRS-AKHMLIPYVPMLVPPKKWKGYNKGGYL 459
+ + K+ G + + V+E L R L ++PM+ PP W + KG YL
Sbjct: 594 MQL-------RKGKKIGTIIPNKAVVELLVREPVPDFLARHLPMVTPPDPWVSFEKGAYL 646
Query: 460 FLPSYVMRTHGSRKQQEALK--SVTGNCMKKVFEALDTLGSTKWRVNKQVLSVLESIWVS 517
+ V+R ++Q ++ M +VF+ LD LG T W++N V V+ +W S
Sbjct: 647 ETKTPVLRLKNGEREQRLYTEAAIARGDMDQVFKGLDVLGKTGWKINSPVFKVMLDVWNS 706
Query: 518 GGNIAGLVDRNDV--LIPEKPLSEDMTEVQKWKWSVRKAKKINQER---HSQRCDTELKL 572
G +A + + + L PE +ED T + W +++ K I ER HSQRC +L
Sbjct: 707 GKQVANIPPLDPIFDLPPEPASTEDPTVKRAW---LKEIKVIENERSGLHSQRCFMNFQL 763
Query: 573 SVARRMKDEEGFYYPHNLDFRGRAYPMHPHLNHLSSDVCRGVLEFAEGRPLGKSGLRWLK 632
+AR +D+ FY+PHN+DFRGRAYP+ P+LNH+ +D RG++ FA+G+PLG+SGLRWLK
Sbjct: 764 EIARAYRDQT-FYFPHNVDFRGRAYPIPPYLNHMGADHVRGLMLFAKGKPLGESGLRWLK 822
Query: 633 IHLANLFSGGVEKLSHDGRLAFVENHLYEIFDSAENPINGSRWWLTAEDPFQCLAACINL 692
+HLAN++ G +K S R F + ++ I DS NP+NG++WWL AEDP+QCLA C L
Sbjct: 823 VHLANVY--GFDKASLQERQDFADENIENIRDSVNNPLNGNQWWLQAEDPWQCLATCFEL 880
Query: 693 SEALKSSSPHSVISHLPIHQDGSCNGLQHYAALGRNTLEAAAVNLVAGEKPADVYSEIAV 752
+ AL+ P +SHLPIHQDG+CNGLQHYAALG +T A VNLV G++PADVYS +A
Sbjct: 881 AAALELEDPTKYVSHLPIHQDGTCNGLQHYAALGGDTWGAQQVNLVPGDRPADVYSAVAK 940
Query: 753 RVHEIMKRDSNKDPSKHPQALLAKILIDQVDRKLVKQTVMTSVYGVTFVGAREQIKRRLE 812
V + ++ D KD AK + ++ RK+VKQTVMT+VYGVT+VGAR+Q+ +++E
Sbjct: 941 LVIKGIEDDLAKDNE------FAKAMHGKITRKVVKQTVMTNVYGVTYVGARKQVLKQIE 994
Query: 813 EK-GHITDDRQLFAA--ACYAAKVTLTALGEIFEAARSIMGWLGDCAKVIA--------- 860
+IT + + AA A Y + A+ +F+ A I WLG+ +
Sbjct: 995 AAYPNITAESGIEAALLASYVTQHIFRAMSTMFKGAHDIQNWLGEIGGRVCRALTPEQLD 1054
Query: 861 ----SENQP-----------------------------------VRWTTPLGLPVVQPYC 881
SE P + WTTPL +PVVQPY
Sbjct: 1055 EFERSERSPHGDGTASGENITLAGNPRKSSAHKNDEILNNFQSTIIWTTPLRMPVVQPYR 1114
Query: 882 KNERHLIRTSLQ--VLALQREGNLVKIRKQRTAFPPNFVHSLDGSHMMMTAVACRDAGLH 939
K+ + T +Q V+ + + V RKQ AFPPNF+HSLD SHM+++A+ C + GL
Sbjct: 1115 KHGTKTVSTCMQDLVMTIPERSDPVNRRKQLQAFPPNFIHSLDASHMILSALHCDELGLT 1174
Query: 940 FAGL 943
FA +
Sbjct: 1175 FAAV 1178
>sp|O00411|RPOM_HUMAN DNA-directed RNA polymerase, mitochondrial OS=Homo sapiens GN=POLRMT
PE=1 SV=2
Length = 1230
Score = 407 bits (1047), Expect = e-112, Method: Compositional matrix adjust.
Identities = 246/711 (34%), Positives = 384/711 (54%), Gaps = 46/711 (6%)
Query: 249 PHIELLPADKVAVIVMHKMMGLVMAGHEDRCVQVVQAAVHIGMAIEQEIRIHSFLEKTKN 308
P + LL +V +++ + L G + +A + Q R+ ++ +N
Sbjct: 469 PFLCLLDEREVVRMLLQVLQALPAQGESFTTLARELSARTFSRHVVQRQRVSGQVQALQN 528
Query: 309 YKRKKIIADTEEVLSKEKELLRKRVNSLIKSKRVMEAQKLLKNEETKPWGRDTQAKLGSR 368
+ RK + + E L R+ L + + E +PW Q +LG
Sbjct: 529 HYRKYLCLLASDAEVPEPCLPRQYWEELGAPEALRE----------QPWPLPVQMELGKL 578
Query: 369 LVELLIETAYVQHPVNPADYSPPDVRPAFRHRFKTILKHPGQ-KTTKRYGVVECDPLVLE 427
L E+L++ + ++ +P R +L H + ++ G+++ P ++
Sbjct: 579 LAEMLVQATQMPCSLD---------KPHRSSRLVPVLYHVYSFRNVQQIGILKPHPAYVQ 629
Query: 428 GLDRSAKHMLI---PYVPMLVPPKKWKGYNKGGYLFLPSYVMRT-HGSRKQQEALKSVTG 483
L+++A+ L VPML PP W + G +L P+ +MRT G+ + QE L++
Sbjct: 630 LLEKAAEPTLTFEAVDVPMLCPPLPWTSPHSGAFLLSPTKLMRTVEGATQHQELLETCPP 689
Query: 484 NCMKKVFEALDTLGSTKWRVNKQVLSVLESIWVSGGNIAGLVDRNDVLIPEKP---LSED 540
+ +AL LG+ WRVN +VL ++ ++ + G V P+ P L
Sbjct: 690 TALHGALDALTQLGNCAWRVNGRVLDLVLQLFQAKGCPQLGVPAPPSEAPQPPEAHLPHS 749
Query: 541 MTEVQK--WKWSVRKAKKINQERHSQRCDTELKLSVARRMKDEEGFYYPHNLDFRGRAYP 598
+K + + +K+ +E HS R + +LS+A+ ++D F+ PHN+DFRGR YP
Sbjct: 750 AAPARKAELRRELAHCQKVAREMHSLRAEALYRLSLAQHLRDRV-FWLPHNMDFRGRTYP 808
Query: 599 MHPHLNHLSSDVCRGVLEFAEGRPLGKSGLRWLKIHLANLFSGGVEKLSHDGRLAFVENH 658
PH NHL SDV R +LEFA+GRPLG GL WLKIHL NL +G ++ RLAF E
Sbjct: 809 CPPHFNHLGSDVARALLEFAQGRPLGPHGLDWLKIHLVNL-TGLKKREPLRKRLAFAEEV 867
Query: 659 LYEIFDSAENPINGSRWWLTAEDPFQCLAACINLSEALKSSSPHSVISHLPIHQDGSCNG 718
+ +I DSA+ P+ G +WW+ AE+P+Q LA C+ ++ A+++S P + +SHLP+HQDGSCNG
Sbjct: 868 MDDILDSADQPLTGRKWWMGAEEPWQTLACCMEVANAVRASDPAAYVSHLPVHQDGSCNG 927
Query: 719 LQHYAALGRNTLEAAAVNLVAGEKPADVYSEIAVRVHEIMKRDSNKDPSKHPQALLAKIL 778
LQHYAALGR+++ AA+VNL + P DVYS +A +V ++D+ + +A++L
Sbjct: 928 LQHYAALGRDSVGAASVNLEPSDVPQDVYSGVAAQVEVFRRQDAQRG------MRVAQVL 981
Query: 779 IDQVDRKLVKQTVMTSVYGVTFVGAREQIKRRLEEKGHITDDRQLFA--AACYAAKVTLT 836
+ RK+VKQTVMT VYGVT G R QI++RL E ++D Q F A+ Y +
Sbjct: 982 EGFITRKVVKQTVMTVVYGVTRYGGRLQIEKRLRE---LSDFPQEFVWEASHYLVRQVFK 1038
Query: 837 ALGEIFEAARSIMGWLGDCAKVIASENQPVRWTTPLGLPVVQPYCKNER-HLIRTSLQVL 895
+L E+F R+I WL + A++I+ V W TPLG+PV+QPY + + I +Q +
Sbjct: 1039 SLQEMFSGTRAIQHWLTESARLISHMGSVVEWVTPLGVPVIQPYRLDSKVKQIGGGIQSI 1098
Query: 896 ALQREGNLVK---IRKQRTAFPPNFVHSLDGSHMMMTAVACRDAGLHFAGL 943
G++ + RKQ+ FPPNF+HSLD SHMM+TA+ C GL F +
Sbjct: 1099 TYTHNGDISRKPNTRKQKNGFPPNFIHSLDSSHMMLTALHCYRKGLTFVSV 1149
>sp|Q8BKF1|RPOM_MOUSE DNA-directed RNA polymerase, mitochondrial OS=Mus musculus GN=Polrmt
PE=2 SV=1
Length = 1207
Score = 403 bits (1036), Expect = e-111, Method: Compositional matrix adjust.
Identities = 234/609 (38%), Positives = 345/609 (56%), Gaps = 33/609 (5%)
Query: 349 LKNEETKPWGRDTQAKLGSRLVELLIETAYVQHPVNPADYSPPDVRPAFRHRFKTILKHP 408
L+ +PW +LG +L ELL++ VQ P + A R + +
Sbjct: 530 LEAPAQQPWSVPVLLQLGKQLAELLVQA--VQMPRSLA------ARQGAQRSIPVLYHVY 581
Query: 409 GQKTTKRYGVVECDPLVLEGLDRSAKHMLI---PYVPMLVPPKKWKGYNKGGYLFLPSYV 465
++ ++ G+++ P L+ +A+ L VPML PP W + G YL + +
Sbjct: 582 SFRSYRQVGILKPHPAFTHLLETAAEPTLTFETTEVPMLCPPLPWTSLHSGAYLLSSTKL 641
Query: 466 MR-THGSRKQQEALKSVTGNCMKKVFEALDTLGSTKWRVNKQVLSVLESIWVSGGNIAGL 524
MR T G+ + Q L+ + +AL LG+ WRVN +L ++ I+ G +
Sbjct: 642 MRATEGTTQHQRLLEQCPPAQLHGPLDALTQLGNCAWRVNGHLLDLVLQIFRDKGCMPLG 701
Query: 525 VD--RNDVLIPEK-PLSEDMTEVQK--WKWSVRKAKKINQERHSQRCDTELKLSVARRMK 579
V R++ P + L T V K + + + K+ +E HS R + +LS+A+ ++
Sbjct: 702 VPPPRSEAPRPARYQLPPGSTPVHKSELRKELARCLKVAREMHSLRSEALYRLSLAQHLR 761
Query: 580 DEEGFYYPHNLDFRGRAYPMHPHLNHLSSDVCRGVLEFAEGRPLGKSGLRWLKIHLANLF 639
F+ PHN+DFRGR YP PH NHL SD+ R +LEFAEGRPLG GL WLKIHL NL
Sbjct: 762 -HRVFWLPHNMDFRGRTYPCPPHFNHLGSDLARALLEFAEGRPLGPRGLDWLKIHLINL- 819
Query: 640 SGGVEKLSHDGRLAFVENHLYEIFDSAENPINGSRWWLTAEDPFQCLAACINLSEALKSS 699
+G + S RLAF + + EI DSA+NP+ G +WW+ A++P+Q LA C+ ++ A++S
Sbjct: 820 TGLKKGDSLRMRLAFADEVMEEILDSADNPLTGRKWWMEADEPWQTLACCMEVAHAVRSP 879
Query: 700 SPHSVISHLPIHQDGSCNGLQHYAALGRNTLEAAAVNLVAGEKPADVYSEIAVRVHEIMK 759
P + ISHLP+HQDGSCNGLQHYAALGR+++ AA+VNL + P DVY E+A +V E +
Sbjct: 880 DPAAYISHLPVHQDGSCNGLQHYAALGRDSVGAASVNLTPSDLPQDVYREVATQVEEFRQ 939
Query: 760 RDSNKDPSKHPQALLAKILIDQVDRKLVKQTVMTSVYGVTFVGAREQIKRRLEEKGHITD 819
+D+ + +A++L + RK+VKQTVMT VYGVT G R QI++RL E ++D
Sbjct: 940 QDAKEG------LRVAQVLEGFISRKVVKQTVMTVVYGVTRYGGRLQIEKRLRE---LSD 990
Query: 820 DRQLFA--AACYAAKVTLTALGEIFEAARSIMGWLGDCAKVIASENQPVRWTTPLGLPVV 877
Q F A+ Y + +L E+F + R+I WL + A +I+ PV W TPLG+P++
Sbjct: 991 FPQEFVWEASHYLVRQVFKSLQEMFTSTRAIQHWLTESANLISHAGWPVEWVTPLGIPII 1050
Query: 878 QPYCKNERHLIRTSLQVLALQR---EGNLVKIRKQRTAFPPNFVHSLDGSHMMMTAVACR 934
QPY + + ++ LQ + L E KQ+ FPPNF+HSLD SHMM+TA+ C
Sbjct: 1051 QPYHRESKVQVKGGLQSITLTSSVDESQKPNTLKQKNGFPPNFIHSLDSSHMMLTALHCY 1110
Query: 935 DAGLHFAGL 943
GL F +
Sbjct: 1111 RKGLIFVSV 1119
>sp|P07659|RPOL_BPT3 DNA-directed RNA polymerase OS=Enterobacteria phage T3 GN=1 PE=3
SV=1
Length = 884
Score = 266 bits (679), Expect = 8e-70, Method: Compositional matrix adjust.
Identities = 227/777 (29%), Positives = 366/777 (47%), Gaps = 108/777 (13%)
Query: 209 LAPNLPHIKGLFLGWFGPLSEAIEREQKMQRTKKQKAAYAPHIELLPADKVAVIVMHKMM 268
LA LP + + W E+ + ++ +AYAP ++LL + A I +
Sbjct: 75 LATLLPKLTTRIVEWL---------EEYASKKGRKPSAYAP-LQLLKPEASAFITLK--- 121
Query: 269 GLVMAGHEDRCVQVVQAAVH-IGMAIEQEIRIHSFLEKTKNYKRKKIIADTEEVLSK-EK 326
+++A + +QAA +G AIE E R + ++ + K EE L+K
Sbjct: 122 -VILASLTSTNMTTIQAAAGMLGKAIEDEAR----FGRIRDLEAKHFKKHVEEQLNKRHG 176
Query: 327 ELLRKRVNSLIKSKRVMEAQKLLKNEETKPWGRDTQAKLGSRLVELLIE-TAYVQHPVNP 385
++ +K ++++ M + LL E W ++T +G RL+E+LIE T V+ +
Sbjct: 177 QVYKKAFMQVVEAD--MIGRGLLGGEAWSSWDKETTMHVGIRLIEMLIESTGLVELQRHN 234
Query: 386 ADYSPPDVRPAFRHRFKTILKHPGQKTTKRYGVVECDPLVLEGLDRSAKHMLIPYVPMLV 445
A + D H + + KR G L G+ + P +V
Sbjct: 235 AGNAGSD------HEALQLAQEYVDVLAKRAGA-------LAGISPM-------FQPCVV 274
Query: 446 PPKKWKGYNKGGYLF---LPSYVMRTHGSRKQQEALKSVTGNCMKKVFEALDTLGSTKWR 502
PPK W GGY P ++RTH + L M +V++A++ +T W+
Sbjct: 275 PPKPWVAITGGGYWANGRRPLALVRTHSKK----GLMRYEDVYMPEVYKAVNLAQNTAWK 330
Query: 503 VNKQVLSVLESIWVSGGN--IAGLVDRNDVLIPEKPLSEDMTE--VQKWKWSVRKAKKIN 558
+NK+VL+V+ I V+ N +A + +P KP D E +++WK + +++
Sbjct: 331 INKKVLAVVNEI-VNWKNCPVADIPSLERQELPPKPDDIDTNEAALKEWKKAAAGIYRLD 389
Query: 559 QERHSQRCDTELKLSVARRMKDEEGFYYPHNLDFRGRAYPMHPHLNHLSSDVCRGVLEFA 618
+ R S+R E L A + ++ ++P+N+D+RGR Y + P N +D+ +G+L A
Sbjct: 390 KARVSRRISLEFMLEQANKFASKKAIWFPYNMDWRGRVYAV-PMFNPQGNDMTKGLLTLA 448
Query: 619 EGRPLGKSGLRWLKIHLANLFSGGVEKLSHDGRLAFVENHLYEIFDSAENPINGSRWWLT 678
+G+P+G+ G WLKIH AN GV+K+ R+AF+E H+ +I A++PIN + WW
Sbjct: 449 KGKPIGEEGFYWLKIHGAN--CAGVDKVPFPERIAFIEKHVDDILACAKDPINNT-WWAE 505
Query: 679 AEDPFQCLAACINLSEALKSSSPHSVISH---LPIHQDGSCNGLQHYAALGRNTLEAAAV 735
+ PF LA C + H +S+ LP+ DGSC+G+QH++A+ R+ + AV
Sbjct: 506 QDSPFCFLAFCFEYA-----GVTHHGLSYNCSLPLAFDGSCSGIQHFSAMLRDEVGGRAV 560
Query: 736 NLVAGEKPADVYSEIAVRVHEIMKRD------------SNKDPSKHPQ-------ALLAK 776
NL+ E D+Y +A +V+EI+K+D ++KD + + L +
Sbjct: 561 NLLPSETVQDIYGIVAQKVNEILKQDAINGTPNEMITVTDKDTGEISEKLKLGTSTLAQQ 620
Query: 777 ILIDQVDRKLVKQTVMTSVYGVTFVGAREQIKRRLEEKGHITDDRQLFA----AACYAAK 832
L V R + K++VMT YG G R+Q+ + + +F AA Y AK
Sbjct: 621 WLAYGVTRSVTKRSVMTLAYGSKEFGFRQQVLDDTIQPAIDSGKGLMFTQPNQAAGYMAK 680
Query: 833 VTLTALGEIFEAARSIMGWLGDCAKVIASENQ------------PVRWTTPLGLPVVQPY 880
+ A+ AA M WL AK++A+E + V WTTP G PV Q Y
Sbjct: 681 LIWDAVSVTVVAAVEAMNWLKSAAKLLAAEVKDKKTKEILRHRCAVHWTTPDGFPVWQEY 740
Query: 881 CKN-ERHLIRTSLQVLALQREGNLVK-----IRKQRTAFPPNFVHSLDGSHMMMTAV 931
K ++ L L LQ N +K KQ + PNFVHS DGSH+ MT V
Sbjct: 741 RKPLQKRLDMIFLGQFRLQPTINTLKDSGIDAHKQESGIAPNFVHSQDGSHLRMTVV 797
>sp|P18147|RPOL_BPK11 DNA-directed RNA polymerase OS=Enterobacteria phage K11 GN=1 PE=3
SV=1
Length = 906
Score = 238 bits (607), Expect = 2e-61, Method: Compositional matrix adjust.
Identities = 199/704 (28%), Positives = 333/704 (47%), Gaps = 104/704 (14%)
Query: 288 HIGMAIEQEIRIHSFLEKTKNYKRKKIIADTEEVLSKEKELLRKRVNSLIKSK--RVMEA 345
+G A+E E R E+ Y +K + + L KRV + K +V+EA
Sbjct: 160 QLGKALEDEARFGRIREQEAAYFKKNV-----------ADQLDKRVGHVYKKAFMQVVEA 208
Query: 346 ----QKLLKNEETKPWGRDTQAKLGSRLVELLIE-TAYVQHPVNPADYSPPDVRPAFRHR 400
+ +L + W D Q +G++L+ELLIE T V+ N DV
Sbjct: 209 DMISKGMLGGDNWASWKTDEQMHVGTKLLELLIEGTGLVEMTKNKMADGSDDV------- 261
Query: 401 FKTILKHPGQKTTKRYGVVECDPLVLEGLDRSAKHM--LIP-YVPMLVPPKKWKGYNKGG 457
T ++ +V+ P +E L + A + + P + P +VPPK W GG
Sbjct: 262 --TSMQ-----------MVQLAPAFVELLSKRAGALAGISPMHQPCVVPPKPWVETVGGG 308
Query: 458 YLFL---PSYVMRTHGSRKQQEALKSVTGNCMKKVFEALDTLGSTKWRVNKQVLSVLESI 514
Y + P ++RTH + AL+ M +V++A++ +T W+VNK+VL+V+ I
Sbjct: 309 YWSVGRRPLALVRTHSKK----ALRRYADVHMPEVYKAVNLAQNTPWKVNKKVLAVVNEI 364
Query: 515 --W--VSGGNIAGLVDRNDVLIPEKPLSEDMTEVQKWKWSVRKAK--KINQERHSQRCDT 568
W G++ ++R + +P +P D EV + W A + ++ R S+RC
Sbjct: 365 VNWKHCPVGDVPA-IEREE--LPPRPDDIDTNEVARKAWRKEAAAVYRKDKARQSRRCRC 421
Query: 569 ELKLSVARRMKDEEGFYYPHNLDFRGRAYPMHPHLNHLSSDVCRGVLEFAEGRPLGKSGL 628
E ++ A + + + ++P+N+D+RGR Y + N +D+ +G L A+G+P+G G
Sbjct: 422 EFMVAQANKFANHKAIWFPYNMDWRGRVYAV-SMFNPQGNDMTKGSLTLAKGKPIGLDGF 480
Query: 629 RWLKIHLANLFSGGVEKLSHDGRLAFVENHLYEIFDSAENPINGSRWWLTAEDPFQCLAA 688
WLKIH AN GV+K+ R+ F+E + I SA +P+N + WW + PF LA
Sbjct: 481 YWLKIHGAN--CAGVDKVPFPERIKFIEENEGNILASAADPLNNT-WWTQQDSPFCFLAF 537
Query: 689 CINLSEALKSSSPHSVISHLPIHQDGSCNGLQHYAALGRNTLEAAAVNLVAGEKPADVYS 748
C + ++ LP+ DGSC+G+QH++A+ R+++ AVNL+ + D+Y
Sbjct: 538 CFEYAGVKHHGLNYNC--SLPLAFDGSCSGIQHFSAMLRDSIGGRAVNLLPSDTVQDIYK 595
Query: 749 EIAVRVHEIM------------KRDSNKDPSKHPQ-------ALLAKILIDQVDRKLVKQ 789
+A +V+E++ ++ ++K+ + + L A+ L V RK+ K+
Sbjct: 596 IVADKVNEVLHQHAVNGSQTVVEQIADKETGEFHEKVTLGESVLAAQWLQYGVTRKVTKR 655
Query: 790 TVMTSVYGVTFVGAREQIKRRLEEKGHITDDRQLFA----AACYAAKVTLTALGEIFEAA 845
+VMT YG R+Q+ + + +F AA Y AK+ A+ AA
Sbjct: 656 SVMTLAYGSKESLVRQQVLEDTIQPAIDNGEGLMFTHPNQAAGYMAKLIWDAVTVTVVAA 715
Query: 846 RSIMGWLGDCAKVIASENQ------------PVRWTTPLGLPVVQPYCKNER------HL 887
M WL AK++A+E + + W TP G PV Q Y K + L
Sbjct: 716 VEAMNWLKSAAKLLAAEVKDKKTKEVLRKRCAIHWVTPDGFPVWQEYRKQNQARLKLVFL 775
Query: 888 IRTSLQVLALQREGNLVKIRKQRTAFPPNFVHSLDGSHMMMTAV 931
+ ++++ + + + KQ + PNFVHS DGSH+ MT V
Sbjct: 776 GQANVKMTYNTGKDSEIDAHKQESGIAPNFVHSQDGSHLRMTVV 819
>sp|P00573|RPOL_BPT7 DNA-directed RNA polymerase OS=Enterobacteria phage T7 GN=1 PE=1
SV=2
Length = 883
Score = 238 bits (606), Expect = 3e-61, Method: Compositional matrix adjust.
Identities = 227/824 (27%), Positives = 366/824 (44%), Gaps = 129/824 (15%)
Query: 178 LRRRQVKQETEAWERMVDEYKELEAKMIEKRL--------APNLPHIKGLFLGWFGPLSE 229
L R Q+ E E++E ++ KM E++L A P I L +++
Sbjct: 32 LAREQLALEHESYEMGEARFR----KMFERQLKAGEVADNAAAKPLITTLLPKMIARIND 87
Query: 230 AIEREQKMQRTKKQKAAYAPHIELLPADKVAVIVMHKMMGLVMAGHEDRCVQVVQAAVHI 289
E E K +R K+ A ++ + + VA I + + + + ++ VQ V +A I
Sbjct: 88 WFE-EVKAKRGKRPTAF--QFLQEIKPEAVAYITIKTTLACLTSA-DNTTVQAVASA--I 141
Query: 290 GMAIEQEIRIHSFLEKTKNYKRKKIIADTEEVLSKEKELLRKRVNSLIKSK--RVMEA-- 345
G AIE E R + + +K + +E L KRV + K +V+EA
Sbjct: 142 GRAIEDEARFGRIRDLEAKHFKKNV-----------EEQLNKRVGHVYKKAFMQVVEADM 190
Query: 346 --QKLLKNEETKPWGRDTQAKLGSRLVELLIETAYVQHPVNPADYSPPDVRPAFRHRFKT 403
+ LL E W ++ +G R +E+LIE+ + HR
Sbjct: 191 LSKGLLGGEAWSSWHKEDSIHVGVRCIEMLIESTGM----------------VSLHRQNA 234
Query: 404 ILKHPGQKTTKRYGVVECDPLVLEGLDRSAKHM--LIP-YVPMLVPPKKWKGYNKGGYLF 460
+ +T +E P E + A + + P + P +VPPK W G GGY
Sbjct: 235 GVVGQDSET------IELAPEYAEAIATRAGALAGISPMFQPCVVPPKPWTGITGGGYWA 288
Query: 461 ---LPSYVMRTHGSRKQQEALKSVTGNCMKKVFEALDTLGSTKWRVNKQVLSVLESI--W 515
P ++RTH + AL M +V++A++ +T W++NK+VL+V I W
Sbjct: 289 NGRRPLALVRTHSKK----ALMRYEDVYMPEVYKAINIAQNTAWKINKKVLAVANVITKW 344
Query: 516 --VSGGNIAGLVDRNDVLIPEKPLSEDMT--EVQKWKWSVRKAKKINQERHSQRCDTELK 571
+I ++R + +P KP DM + WK + + ++ R S+R E
Sbjct: 345 KHCPVEDIPA-IEREE--LPMKPEDIDMNPEALTAWKRAAAAVYRKDKARKSRRISLEFM 401
Query: 572 LSVARRMKDEEGFYYPHNLDFRGRAYPMHPHLNHLSSDVCRGVLEFAEGRPLGKSGLRWL 631
L A + + + ++P+N+D+RGR Y + N +D+ +G+L A+G+P+GK G WL
Sbjct: 402 LEQANKFANHKAIWFPYNMDWRGRVYAVS-MFNPQGNDMTKGLLTLAKGKPIGKEGYYWL 460
Query: 632 KIHLANLFSGGVEKLSHDGRLAFVENHLYEIFDSAENPINGSRWWLTAEDPFQCLAACIN 691
KIH AN GV+K+ R+ F+E + I A++P+ + WW + PF LA C
Sbjct: 461 KIHGAN--CAGVDKVPFPERIKFIEENHENIMACAKSPLENT-WWAEQDSPFCFLAFCFE 517
Query: 692 LSEALKSSSPHSVISH---LPIHQDGSCNGLQHYAALGRNTLEAAAVNLVAGEKPADVYS 748
+ H +S+ LP+ DGSC+G+QH++A+ R+ + AVNL+ E D+Y
Sbjct: 518 YA-----GVQHHGLSYNCSLPLAFDGSCSGIQHFSAMLRDEVGGRAVNLLPSETVQDIYG 572
Query: 749 EIAVRVHEIMKRDSNKDPSKH-------------------PQALLAKILIDQVDRKLVKQ 789
+A +V+EI++ D+ +AL + L V R + K+
Sbjct: 573 IVAKKVNEILQADAINGTDNEVVTVTDENTGEISEKVKLGTKALAGQWLAYGVTRSVTKR 632
Query: 790 TVMTSVYGVTFVGAREQIKRRLEEKGHITDDRQLFA----AACYAAKVTLTALGEIFEAA 845
+VMT YG G R+Q+ + + +F AA Y AK+ ++ AA
Sbjct: 633 SVMTLAYGSKEFGFRQQVLEDTIQPAIDSGKGLMFTQPNQAAGYMAKLIWESVSVTVVAA 692
Query: 846 RSIMGWLGDCAKVIASENQ------------PVRWTTPLGLPVVQPYCK------NERHL 887
M WL AK++A+E + V W TP G PV Q Y K N L
Sbjct: 693 VEAMNWLKSAAKLLAAEVKDKKTGEILRKRCAVHWVTPDGFPVWQEYKKPIQTRLNLMFL 752
Query: 888 IRTSLQVLALQREGNLVKIRKQRTAFPPNFVHSLDGSHMMMTAV 931
+ LQ + + + KQ + PNFVHS DGSH+ T V
Sbjct: 753 GQFRLQPTINTNKDSEIDAHKQESGIAPNFVHSQDGSHLRKTVV 796
>sp|P06221|RPOL_BPSP6 DNA-directed RNA polymerase OS=Enterobacteria phage SP6 PE=2 SV=1
Length = 874
Score = 196 bits (499), Expect = 6e-49, Method: Compositional matrix adjust.
Identities = 196/787 (24%), Positives = 340/787 (43%), Gaps = 110/787 (13%)
Query: 224 FGPLSEAIEREQKMQRTKKQKAAYA-PHIELLPADKVAVIVMHKMMGLVMAGHEDRCVQV 282
P++E I+ ++ KK +A A ++ + + A I M +M ++ + D +Q
Sbjct: 50 IAPMAEGIQAYKEEYEGKKGRAPRALAFLQCVENEVAAYITMKVVMDML---NTDATLQA 106
Query: 283 VQAAVHIGMAIEQEIRIHSFLEKTKNY--KRKKIIADTEEVLSKEKELLRKRVNSLIKSK 340
+ A+ + IE ++R Y K KK + S+ K +++ K
Sbjct: 107 I--AMSVAERIEDQVRFSKLEGHAAKYFEKVKKSLK-----ASRTKSYRHAHNVAVVAEK 159
Query: 341 RVMEAQKLLKNEETKPWGRDTQAKLGSRLVELLIETAYVQHPVNPADYSPPDVRPAFRHR 400
V A+K + + W ++TQ ++G+ L+E+L + + P F
Sbjct: 160 SV--AEKDADFDRWEAWPKETQLQIGTTLLEILEGSVFYNG------------EPVFMRA 205
Query: 401 FKTILKHPGQKTTKRYGVVECDPLVLEGLDRSAKHMLIPYVPMLVPPKKWKGYNKGGYLF 460
+T G KT E + + Y P ++PP+ W+ GG+
Sbjct: 206 MRTY----GGKTIYYLQTSESVGQWISAFKEHVAQLSPAYAPCVIPPRPWRTPFNGGFHT 261
Query: 461 --LPSYVMRTHGSRKQQEALKSVTGNCMKKVFEALDTLGSTKWRVNKQVLSVLESIW--- 515
+ S + G+R E ++ +T M KV++A++ L +T+W++NK VL+V+E +
Sbjct: 262 EKVASRIRLVKGNR---EHVRKLTQKQMPKVYKAINALQNTQWQINKDVLAVIEEVIRLD 318
Query: 516 VSGG--NIAGLVDRNDVLIPEKPLS-----------EDMTEVQKWK----WSVRKAKKIN 558
+ G + L+D+ + P P+ ++M ++W+ W A+
Sbjct: 319 LGYGVPSFKPLIDKENK--PANPVPVEFQHLRGRELKEMLSPEQWQQFINWKGECARLYT 376
Query: 559 QE--RHSQRCDTELKLSVARRMKDEEGFYYPHNLDFRGRAYPMHPHLNHLSSDVCRGVLE 616
E R S+ + AR+ E Y+ + +D R R Y L+ S+D+ + +L
Sbjct: 377 AETKRGSKSAAVVRMVGQARKYSAFESIYFVYAMDSRSRVYVQSSTLSPQSNDLGKALLR 436
Query: 617 FAEGRPL-GKSGLRWLKIHLANLFSGGVEKLSHDGRLAFVENHLYEIF--DSAENPINGS 673
F EGRP+ G L+W I+ ANL+ G +K + D R++ V + ++ D A +P+ +
Sbjct: 437 FTEGRPVNGVEALKWFCINGANLW--GWDKKTFDVRVSNVLDEEFQDMCRDIAADPLTFT 494
Query: 674 RWWLTAEDPFQCLAACINLSEALK---SSSPHSVISHLPIHQDGSCNGLQHYAALGRNTL 730
+W A+ P++ LA C ++ L +HLP+HQDGSC+G+QHY+A+ R+ +
Sbjct: 495 QW-AKADAPYEFLAWCFEYAQYLDLVDEGRADEFRTHLPVHQDGSCSGIQHYSAMLRDEV 553
Query: 731 EAAAVNLVAGEKPADVYSEIAVRVHEIMKRDSNKDPSKHPQALLAKILID---------- 780
A AVNL + P D+Y +A V I K D + +
Sbjct: 554 GAKAVNLKPSDAPQDIYGAVAQVV--IKKNALYMDADDATTFTSGSVTLSGTELRAMASA 611
Query: 781 ----QVDRKLVKQTVMTSVYGVTFVGAREQI-----------------KRRLEEKGH-IT 818
+ R L K+ VMT YG T + RE + + R K H
Sbjct: 612 WDSIGITRSLTKKPVMTLPYGSTRLTCRESVIDYIVDLEEKEAQKAVAEGRTANKVHPFE 671
Query: 819 DDRQLF----AAACYAAKVTLTALGEIFEAARSIMGWLGDCAKVIASENQPVRWTTPLGL 874
DDRQ + AA Y + ++ E+ +A M + A+ A N+ + +T P G
Sbjct: 672 DDRQDYLTPGAAYNYMTALIWPSISEVVKAPIVAMKMIRQLARFAAKRNEGLMYTLPTGF 731
Query: 875 PVVQPYCKNERHLIRTSLQ---VLALQREGNLVKIRKQRTAFPPNFVHSLDGSHMMMTAV 931
+ Q E +RT L ++LQ E ++V A PNFVH D SH+++T
Sbjct: 732 ILEQKIMATEMLRVRTCLMGDIKMSLQVETDIVDEAAMMGAAAPNFVHGHDASHLILTVC 791
Query: 932 ACRDAGL 938
D G+
Sbjct: 792 ELVDKGV 798
>sp|P33540|RPOP_NEUCS Probable DNA-directed RNA polymerase OS=Neurospora crassa PE=3 SV=1
Length = 896
Score = 174 bits (441), Expect = 3e-42, Method: Compositional matrix adjust.
Identities = 153/540 (28%), Positives = 258/540 (47%), Gaps = 64/540 (11%)
Query: 441 VPMLVPPKKWKGYNK------GGYLFLPSYVMRTHGSRKQQEA-LKSVTGNCMKKVFEAL 493
+PM++PP +WK + GG + + +R ++ + + +T N K++ +A+
Sbjct: 284 LPMIIPPLEWKIDDNEKIIEYGGTILNNKHRIRPLRTKSVENSDANDMTYN--KELVDAV 341
Query: 494 DTLGSTKWRVNKQVLSVLESIWVSGGNIAGLVDRNDVLIPEKPLSEDMTEVQKWKWSVRK 553
+ + +N ++L +++ D+ D +I K + D + ++ RK
Sbjct: 342 NFKSKIPYTINLKILD-----FITRDEFINR-DKKDNVIIYKHIHPDSALLGEYMKD-RK 394
Query: 554 AKKINQ--ERHSQRCDTELKLSVARRMKDEEGFYYPHNLDFRGRAYPMHPHLNHLSSDVC 611
KI++ +S+ +S+A+ MKD + FY +D+RGR Y LN ++
Sbjct: 395 NPKISEITTHNSKFLYHSSIISIAKLMKDVKEFYMTVFIDWRGRFYTSSCALNIQGGELA 454
Query: 612 RGVLEFAEGRPLGKSGLRWLKIHLANLFSGGVEKLSHDGRLAFVENHLYEIFDSAENPIN 671
R +L F EG+ L GL+ LKI+ AN F G++K S + RL +VE +L++I D I+
Sbjct: 455 RSLLLFKEGQKLNDIGLKALKIYTANAF--GLDKRSKEERLDWVEQNLHKIID-----ID 507
Query: 672 GSRWWLTAEDPFQCLAACINLSEALKSSSPHSVISHLPIHQDGSCNGLQHYAALGRNTLE 731
W A++P LA + L + P + ISHLPI D +CNGLQH +A+ + +
Sbjct: 508 NYEIWREADEPLLFLACALELKGY--NEDP-NFISHLPILMDATCNGLQHLSAMVNDFVL 564
Query: 732 AAAVNLVA---GEKPADVYSEIAVRVHEIMKRDSNKDPSKHPQALLAKILIDQVDRKLVK 788
A VNL+ + P D+YSE+ + K++ + + L +I V+R LVK
Sbjct: 565 AEKVNLLKSTENDNPRDLYSEVIPHI----KQEILEASKSYEHTNLERI---NVERCLVK 617
Query: 789 QTVMTSVYGVTFVGAREQIKRRLEEK---------------GHITDDRQLFAA--ACYAA 831
+ +MT YG T G +QI + +K I +F +
Sbjct: 618 RGLMTITYGATERGIYDQIVSKFFQKDEWNKTVGLHFVCIDSDIAPKDVVFTQKNILLLS 677
Query: 832 KVTLTALGEIFEAARSIMGWLGDCAKVIASENQPVRWTTPLGLPVVQPYCK----NERHL 887
K+ +L +I ++M + KV+ + PV W TP GL + Q Y K NE
Sbjct: 678 KIIYNSLFKIHPNLNTLMVYFNSIVKVLCELDLPVNWVTPYGLVIQQKYNKFTKYNETTY 737
Query: 888 IRTSLQVLALQREGNLVKIRKQRT--AFPPNFVHSLDGSHMMMTAVACRDAG--LHFAGL 943
+ + L L R+ + I KQ+ AF PNFVHS+DGS++++ RD G ++FA +
Sbjct: 738 VASKRYKLVL-RKADTTSISKQKQIQAFIPNFVHSMDGSNIVLLINTIRDEGRKINFASI 796
>sp|Q8L6J4|RPO1A_TOBAC DNA-directed RNA polymerase 1A (Fragment) OS=Nicotiana tabacum
GN=RPOT1-SYL PE=3 SV=2
Length = 155
Score = 144 bits (363), Expect = 3e-33, Method: Compositional matrix adjust.
Identities = 64/86 (74%), Positives = 76/86 (88%)
Query: 858 VIASENQPVRWTTPLGLPVVQPYCKNERHLIRTSLQVLALQREGNLVKIRKQRTAFPPNF 917
+IA EN PVRWTTPLGLPVVQPY K RHLI+TSLQ+L LQRE + V +++QRTAFPPNF
Sbjct: 1 IIAMENHPVRWTTPLGLPVVQPYRKLGRHLIKTSLQILTLQRETDKVMVKRQRTAFPPNF 60
Query: 918 VHSLDGSHMMMTAVACRDAGLHFAGL 943
VHSLDGSHMMMTA+AC+++GL FAG+
Sbjct: 61 VHSLDGSHMMMTAIACKESGLSFAGV 86
>sp|P22372|RPOP_CLAPU Probable DNA-directed RNA polymerase OS=Claviceps purpurea PE=3
SV=1
Length = 936
Score = 142 bits (358), Expect = 1e-32, Method: Compositional matrix adjust.
Identities = 136/541 (25%), Positives = 251/541 (46%), Gaps = 81/541 (14%)
Query: 441 VPMLVPPKKWKGYNKGGYL-----FLPSYVMRTHG----SRKQQEALKSVTGNCMKKVFE 491
+PM+V PK + GGYL +L S + + SR Q++ + ++E
Sbjct: 314 LPMIVAPKPYSKEEHGGYLLNDFDYLDSLLTKKLNMNDISRIQEKNI----------IYE 363
Query: 492 ALDTLGSTKWRVNKQVLSVLESIWVSGGNIAGLVDRNDVLIPEKPLSEDMTEVQKWKWSV 551
+++ + +T +++NK++L L +V + + L +++T+++
Sbjct: 364 SINKMMATAFQINKKLLKYLLEDYVFSKLLK---------LEGDDLYKNITQIEIDNMDK 414
Query: 552 RKAKKINQERHSQRCDTELKLSVARRMKDEEGFYYPHNLDFRGRAYPMHPHLNHLSSDVC 611
R +K Q+ SQ+ + + +A ++ Y+P LD RGR YP+ + ++ SS++
Sbjct: 415 RDNQKY-QQYLSQKLLRDYIIDIATVFQNVPELYFPLKLDHRGRLYPITAYFHYQSSELA 473
Query: 612 RGVLEFAEGRPLGKS---GLRWLKIHLANLFSGGVEKLSHDGRLAFVENHLYEIFDSAEN 668
+ +L FA + +S + +LK + A F ++K S+D RL +V+ + EN
Sbjct: 474 KALLLFAIPDTIERSDSISIDYLKAYGATCFGNKLDKKSYDKRLQWVDAN-------WEN 526
Query: 669 PINGSRWWL--TAEDPFQCLAACIN---LSEALKSSSPHSVISHLPIHQDGSCNGLQHYA 723
IN L AE+ F LA C+ L++ L S + ++LP+ DG+CNG QH
Sbjct: 527 IINYRNNVLLELAENKFMFLAYCLEIERLNQFLNDDSIENFKTYLPLQLDGTCNGFQHIV 586
Query: 724 ALGRNTLEAAAVNLVAGEK---PADVYSEIA--VRVHEIMKRDSNKDPSKHPQALLAKIL 778
L + +NL K P+D YS + + +H + K+D + D K +++
Sbjct: 587 LLSNEVKLYSQLNLDGKSKNQDPSDFYSFMINQLNIHLLNKKDVSTD--KEDIESYDRLI 644
Query: 779 IDQVDRKLVKQTVMTSVYGV-TFVGAREQIK--------RRLEEKGHITD-------DRQ 822
+ R +KQ +MT Y F A+ I+ + ++EKG IT +
Sbjct: 645 NLGLSRANIKQAIMTKPYNAKDFTVAKYIIETLLIASEDKYIDEKG-ITRTECWYKVNET 703
Query: 823 LFAAACYAAKVTLT-ALGEI----FEAARSIMGWLGDCAKVIASENQPVRWTTPLGLPVV 877
+ AC+ L + EI + +S++ +L ++++ N P+ W+ P GL V
Sbjct: 704 MTNVACFRDIYLLAKCINEILFLNYPQIKSLLEYLNSISEIMLKLNLPITWSLPTGLEVH 763
Query: 878 QPYCKNE------RHLIRTSLQVLALQREGNLVKIRKQRTAFPPNFVHSLDGSHMMMTAV 931
Q Y +++ + TSL L + + + K+ KQ+ A PN +HSLD + ++M
Sbjct: 764 QQYMRSKLKKTKPYTYLDTSL-TLKITDKIKMDKV-KQQIALMPNLIHSLDAASLIMLYF 821
Query: 932 A 932
A
Sbjct: 822 A 822
>sp|P33539|RPOP_AGABT Probable DNA-directed RNA polymerase OS=Agaricus bitorquis PE=3
SV=1
Length = 1102
Score = 132 bits (333), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 123/498 (24%), Positives = 227/498 (45%), Gaps = 77/498 (15%)
Query: 489 VFEALDTLGSTKWRVNKQVLSVLESIWVSGGNIAGLVDRNDVLIPEKPLSEDMTEVQKWK 548
++ +++ L S K+++NK +L+ + + W + + L ++L KP+ E
Sbjct: 527 LYSSINYLNSIKFKINKAMLNFILAEWDNKD--SKLFKGYNML---KPILE--------- 572
Query: 549 WSVRKAKKINQERHSQRCDTELK---LSVARRMKDEEGFYYPHNLDFRGRAYPMHPHLNH 605
+K+I +E+ S L +S+A KD E FY P +DFRGR YP+ ++++
Sbjct: 573 ---TDSKEIKEEKVSSNSKYTLYSNIISLASLYKDNE-FYLPVYVDFRGRVYPLSNYISY 628
Query: 606 LSSDVCRGVLEFAEGR-PLGKSGLRWLKIHLANLFSGGVEKLSHDGRLAFVENHLYEIFD 664
D+ R ++ FA+ + L SG L ++LANL G +KL RL V+ + E +
Sbjct: 629 QGGDLARSLILFADTKCVLNNSGKECLNVYLANL--AGYDKLPWSERLTKVDGIIKEYLE 686
Query: 665 SAENPINGSRWWLTAED----PFQCLAACINLSEALKSSSPHSVISHLPIHQDGSCNGLQ 720
S N I+ +++ D PFQ ++ I ++ L S+P + IS+ PI D SC+G+Q
Sbjct: 687 S--NEISNTKYIEDNIDKISEPFQFIS--IMYAKLLSISNPKANISN-PILFDASCSGIQ 741
Query: 721 HYAALGRNTLEAAAVNLVAG------EKPADVYSEIAVRVHEIMKRDSNKDPSKHPQALL 774
H AAL A+ VNL + P D Y+ + +I + N D ++
Sbjct: 742 HIAALTLEKELASNVNLYTDSSNPKEDYPQDFYT---YALEKIRDKLINSDITELRDI-- 796
Query: 775 AKILIDQVDRKLVKQTVMTSVYGVTFVGAREQIKRRLEEKG------------------H 816
+++RK++K++VMT Y ++ G E + K
Sbjct: 797 ------KLNRKIIKRSVMTIPYNISMAGIGEHLMEHFTVKTVLKYRYVVIPGSATISSKD 850
Query: 817 ITDDRQLFAAACYAAKVTLTALGEIFEAARSIMGWLGDCAKVIASENQPVRWTTPLGLPV 876
+ D + C K+ L + + R + + + N P+ W TP GL +
Sbjct: 851 VYLDYSKYGQLC---KIIYFVLTKELPSLRLLSNYFESMIDIFVKLNIPITWVTPSGLKI 907
Query: 877 VQPYCKNERHLIRTSL----QVLALQREGNLVKIRKQRTAFPPNFVHSLDGS--HMMMTA 930
K + ++TS+ ++ ++ + + + + +F PNF+HSLD S H+++ +
Sbjct: 908 KYTNIKFKPQKVKTSVLNTSKITTIKLPTDSLDVLSTKRSFMPNFIHSLDASNVHLLLNS 967
Query: 931 VACRDAGLHFAGLSFQSA 948
V+ ++ ++ F S
Sbjct: 968 VSYKNLPVYTVHDCFAST 985
>sp|P33541|RPOP_NEUIN Probable DNA-directed RNA polymerase OS=Neurospora intermedia PE=3
SV=2
Length = 811
Score = 127 bits (319), Expect = 4e-28, Method: Compositional matrix adjust.
Identities = 129/526 (24%), Positives = 223/526 (42%), Gaps = 102/526 (19%)
Query: 441 VPMLVPPKKWKGYNKGGYLFLPSYVMRTHGSRKQQEALKSVTGN--------CMKKVFEA 492
+PM+ PP W +GG L + + Q E+L V G+ K++
Sbjct: 243 LPMVCPPLPWGHGIRGGNL--------INLTDTQDESL--VVGSFHHRHKIAITDKLYNV 292
Query: 493 LDTLGSTKWRVNKQVLSVLESIWVSGGNIAGLVDRNDVLIPEKPLSEDMTEVQKWKWSVR 552
++ L + K+++N +LS L++ G I + +
Sbjct: 293 INKLNAFKFKINGDLLSYLQN---EGSFILDFYK-----------------------NTK 326
Query: 553 KAKKINQERHSQRCDTELKLSVARRMKDEEGFYYPHNLDFRGRAYPMHPHLNHLSSDVCR 612
K IN + + +AR + FY N+D+RGR Y +L++ S++
Sbjct: 327 KDTYINNM---------ITIDIARTYLNTP-FYLNVNIDWRGRIYTQSFYLDYQGSELSL 376
Query: 613 GVLEFAEGRPLGKSGLRWLKIHLANLFSGG--VEKLSHDGRLAFVENHLYEIFDSAENPI 670
++ EG+ L + GL + ++ AN+++ G K S R +V +L I + I
Sbjct: 377 ALINLFEGKKLDEKGLFFFYVYGANIYNDGGKFSKKSFQDRFNWVVENLDNIIAMDKEFI 436
Query: 671 NGSRWWLTAEDPFQCLAACINLSEALKSSSPHSVISHLPIHQDGSCNGLQHYAALGRNTL 730
L AE P A C+ + + LK + + V + PI D +C+G+QH+AA+ +
Sbjct: 437 ------LKAESPTLFAAFCLTMRK-LKENPDYPVFN--PIFLDATCSGVQHFAAMLLDLE 487
Query: 731 EAAAVNLV-AGEKPADVYSEIAVRVHEIMKRDSNKDPSKHPQALLAKILIDQVDRKLVKQ 789
VNL+ +GE D YS++ +++ + + K K + I ++R L+K+
Sbjct: 488 LGKYVNLINSGESVNDFYSQLIPAINKAINESAEK---KFKNLKFSDI---SLNRSLLKK 541
Query: 790 TVMTSVYGVTFVGAREQIKRRLE--EKGHITDDRQL-------------------FAAAC 828
+MT Y VT G EQ+K +LE EK I+ +++ F
Sbjct: 542 VIMTKSYNVTTYGITEQLKSKLEKVEKIVISKGKEIKVYDYLVPTKNGDFVVLDTFEVET 601
Query: 829 YAAKVTLTALGEIFEAARSIMGWLGDCAKVIASENQPVRWTTPLGLPVVQPYCKNERHLI 888
A+ + + F SI +L AK+ + P+ W+TP GL + Q Y N +
Sbjct: 602 LASIINDNIFNQ-FPKLHSIYDYLTRLAKIYLKLDIPLSWSTPDGLELTQRY--NLSKVK 658
Query: 889 RTSLQVLALQREG------NLVKIRKQRTAFPPNFVHSLDGSHMMM 928
+ ++ L R N R++ A PN +HSLD SH+ M
Sbjct: 659 KLTINFLGKNRTAVLRSWVNEKDSRREVQAIIPNIIHSLDASHLTM 704
>sp|Q01521|RPOP_PODAS Probable DNA-directed RNA polymerase OS=Podospora anserina PE=3
SV=1
Length = 948
Score = 122 bits (306), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 159/633 (25%), Positives = 269/633 (42%), Gaps = 92/633 (14%)
Query: 337 IKSKRVMEAQKLLKNEETKPWGRDTQAKLGSRLVELLIETAYVQHPVNPADYSPPDVRPA 396
IK+K E QK K +D KL + + L+ + V A
Sbjct: 252 IKNKLSKEEQKCYYLSNWKKDNKDIVEKLEDNIFQFLLGQKISNLTKDTDLLDMETVTMA 311
Query: 397 FRHRFKTILKHPGQKTTKRYGVVECDPLVLEGLDRSAKHMLIPY-VPMLVPPKKWKGYNK 455
+R K+I+ P +K +L+ L ++P +PM+V PK +
Sbjct: 312 YRE--KSIVWKPTKK-------------ILKVLPEDGTLFVLPKKIPMIVKPKPYTTRVN 356
Query: 456 GGYLFLPSYVMRTHGSRKQQEALKSVTGNC-MKKVFEALDTLGSTKWRVNKQVLSVLESI 514
GGYL Y+ K++ L+ T ++F+ ++ L S +++N VL +E
Sbjct: 357 GGYLSNDLYI--NENIVKEKWNLRDNTQILHFNQIFDLVNNLSSIGYKINTDVLDFIE-- 412
Query: 515 WVSGGNIAGLVDRNDVLIPEKPLSEDMTEVQKWKWSVRKAKKINQERHSQRCDTELK--- 571
+ G + +N+++ P + KK E S EL+
Sbjct: 413 -LYGSDYF----KNELIDPRYS--------HPLLKKSKLTKKEKMELDSFLAKKELQENI 459
Query: 572 LSVARRMKDEEGFYYPHNLDFRGRAYPMHPHLNHLSSDVCRGVLEFAE-GRPLGKS--GL 628
L +A ++ F+ P N DFRGR Y +LN+ S+D+ + +L F++ GR K L
Sbjct: 460 LGLAEIFRNIPEFFIPVNADFRGRVYCTPEYLNYQSTDLAKSLLLFSKPGRMYKKDYIAL 519
Query: 629 RWLKIHLANLFSGGVEKLSHDGRLAFVENHLYEIFDSAENPINGSRWWLTAEDPFQCLAA 688
+LKI+ + F G++KLS + R+ +V+ +L ++ +N NG + A++ F LA
Sbjct: 520 SYLKIYGGSSF--GLDKLSANDRIKWVDKNL----NNIKNYRNG-KLIKEAKNKFLFLAF 572
Query: 689 CINLSEALKSSSPHSVI---SHLPIHQDGSCNGLQHYAALGRNTLEAAAVNLVAG---EK 742
CI + L H V ++LPI D +CNG QH + L ++ + +NL +
Sbjct: 573 CIEYNRYLNCLDNHDVSWFDTYLPIQMDATCNGFQHLSLLSLDSNLSKELNLSESTWDDV 632
Query: 743 PADVYSEIAVRVHEIMKRD--SNKDPSKHPQALLAKILIDQVDRKLVKQTVMTSVYGVTF 800
P D Y+ + V + +K + NK+ + +++ ++ R+++K+ +MT Y V+
Sbjct: 633 PKDFYTFLVVCFIDYLKTELLENKNLTPKESESYNRLINMKIIREIIKKGIMTIPYNVSN 692
Query: 801 VGAREQIKRRLEEKGHITDDRQLFAAACYAAK---------VTLTALG--------EIFE 843
I+ E +D L Y K + T LG E F
Sbjct: 693 FSLINYIREGFE-----LEDNSL---EWYIYKNEPSIRLKSLDFTVLGKGLRKVLHEKFH 744
Query: 844 AARSIMGWLGDCAKVIASENQPVRWTTPLGLPVVQPYCKNERHLI--------RTSLQVL 895
++ +L A+V P+ WT P GL V Q Y + I + S++VL
Sbjct: 745 KLDLLLKYLDQVARVCTLLEIPIIWTLPTGLVVRQSYMIRDEVRIKPFNHSNKKFSMKVL 804
Query: 896 ALQREGNLVKIRKQRTAFPPNFVHSLDGSHMMM 928
+ N KQ TAF PN VHSLD + + +
Sbjct: 805 NKTQFNN----SKQITAFMPNLVHSLDAASLTL 833
>sp|O03685|RPOP_GELSP Probable DNA-directed RNA polymerase OS=Gelasinospora sp. (strain
G114) PE=3 SV=1
Length = 831
Score = 116 bits (290), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 100/375 (26%), Positives = 170/375 (45%), Gaps = 48/375 (12%)
Query: 584 FYYPHNLDFRGRAYPMHPHLNHLSSDVCRGVLEFAEGRPLGKSGLRWLKIHLANLFS--G 641
FY N+D+RGR Y +L + S++ ++ EG+ L + GL + ++ AN+++ G
Sbjct: 368 FYLNVNIDWRGRIYTQSFYLGYQGSELSLALINLFEGQKLDEEGLFFFYVYGANIYNEGG 427
Query: 642 GVEKLSHDGRLAFVENHLYEIFDSAENPINGSRWWLTAEDPFQCLAACINLSEALKSSSP 701
K S R +V +L I ++ I L AE P A C+ + + LK +
Sbjct: 428 KFSKKSFQDRFNWVVENLDNIIAMDKDFI------LKAESPTLFAAFCLTMRK-LKENPD 480
Query: 702 HSVISHLPIHQDGSCNGLQHYAALGRNTLEAAAVNLV-AGEKPADVYSEIAVRVHEIMKR 760
H V + PI D +C+G+QH+AA+ + VNL+ +GE D YS++ +++ +
Sbjct: 481 HPVFN--PIFLDATCSGVQHFAAMLLDLELGKYVNLINSGESVNDFYSQLIPAINKAINE 538
Query: 761 DSNKDPSKHPQALLAKILIDQVDRKLVKQTVMTSVYGVTFVGAREQIKRRLE--EKGHIT 818
+ K K + I ++R L+K+ +MT Y VT G EQ+K +LE EK I+
Sbjct: 539 SAEK---KLKNVKFSDI---SLNRSLLKKVIMTKSYNVTTYGITEQLKSKLEKVEKIIIS 592
Query: 819 DDRQL-------------------FAAACYAAKVTLTALGEIFEAARSIMGWLGDCAKVI 859
+++ F A+ + + F SI +L K+
Sbjct: 593 KGKEIKVYDYLVPTKNGKFVVLDTFEVETLASIINDNIFNQ-FPKLHSIYEYLTRLTKIY 651
Query: 860 ASENQPVRWTTPLGLPVVQPYCKNERHLIRTSLQVLALQREGNL------VKIRKQRTAF 913
+ P+ +TP GL + Q Y N + + ++ L R L R++ A
Sbjct: 652 LKLDIPISCSTPDGLELTQRY--NLSKVQKLTINFLGKNRTAVLRSWVSDKDSRREVPAI 709
Query: 914 PPNFVHSLDGSHMMM 928
PN +HSLD +H+ M
Sbjct: 710 IPNIIHSLDAAHLPM 724
>sp|P10581|RPOP_MAIZE Probable DNA-directed RNA polymerase OS=Zea mays PE=3 SV=1
Length = 1098
Score = 59.3 bits (142), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 85/400 (21%), Positives = 155/400 (38%), Gaps = 81/400 (20%)
Query: 585 YYPHNLDFRGRAY---PMHPHLNHLSSDVCRGVLEFAEGRPLGKSGLRWLKIHLAN--LF 639
Y+P LDFRGR Y P H H D+ R ++ F E S + + + L
Sbjct: 530 YFPIFLDFRGRNYRHGPFHFH----ERDLVRSLIIFDES---DDSAAHTINSDVGDRILH 582
Query: 640 SGGVEKLSHDGRLAFVENHLYEIFDSAENPINGSRWW--------LTAEDPFQCLAACIN 691
+ + H + L I++ E+ + ++ L PFQ +++CI+
Sbjct: 583 NFLISAAYHKSKFGVYREALEFIYNKIEDMQSKPTFFEKDIFVDTLCCRHPFQYISSCIS 642
Query: 692 LSEALKSSSPHSVISHLPIHQDGSCNGLQHYAALGRNTLEAAAVNLVA-----GEKPADV 746
L + + SV+ + P+ QD S + Q + + NL+ G D+
Sbjct: 643 L-KTYADTKDLSVLRYTPVFQDASASAYQIMSYFLLDIDYGIHTNLLKKTNTDGRYIRDI 701
Query: 747 YS----------------EIAVRVHEIMKRDSNKDPSKHPQALLAKILIDQVDRKLVKQT 790
Y E+A+++ ++D +++LAKI + DR +VK+
Sbjct: 702 YEFMWGCLIKYLIAEEKIELAIKLLTPNEKDQ--------ESVLAKI-VSIFDRNVVKKM 752
Query: 791 VMTSVYGVTFVGAREQIKRRLEEKGHITDDRQLFAAACYAAKVTLTALGEIFEAARSIMG 850
M +YG T ++ ++ L+ K + KV + ++ + +
Sbjct: 753 FMPMMYGKTDYTLKKDVEDLLKGKSDSEGINLISKHISTYWKVNFGKMKDLMDLINYV-S 811
Query: 851 WLGDCAKVIASENQPVRWTTPLGLPVVQPY---------------CKNERHLIRTSLQVL 895
W G A +++PV ++TP + +Q Y NE+ + TS ++L
Sbjct: 812 WFG------AGQDKPVVYSTPYWV-TLQTYKWRKRVKMKIQYETTKNNEKEVKTTSAKML 864
Query: 896 ALQREGNLVKIRKQRTAFPPNFVHSLDGSHMMMTAVACRD 935
+ + IRK T+ NF+H D TA+ D
Sbjct: 865 IPLNDND---IRKSSTSTFANFIHQKDA----FTAIQLVD 897
>sp|P11716|RYR1_RABIT Ryanodine receptor 1 OS=Oryctolagus cuniculus GN=RYR1 PE=1 SV=1
Length = 5037
Score = 35.8 bits (81), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 33/155 (21%), Positives = 62/155 (40%), Gaps = 24/155 (15%)
Query: 462 PSYVMRTHGSRKQQEALKSVTGNCMKKVFEALDTLGSTK----------WRVNKQVLSVL 511
P YV ++ S+ +++A GN + E L+ + K + K +
Sbjct: 2712 PDYVDASYSSKAEKKATVDAEGNFDPRPVETLNVIIPEKLDSFINKFAEYTHEKWAFDKI 2771
Query: 512 ESIWVSGGNIAGLVDRNDVLIPEKPLSEDMTEVQKW------------KWSVRKAKKINQ 559
++ W G N+ + + +L P K SE E+ +W +W++ KA++ +
Sbjct: 2772 QNNWSYGENVDEELKTHPMLRPYKTFSEKDKEIYRWPIKESLKAMIAWEWTIEKAREGEE 2831
Query: 560 ERHSQRCDTELKLSVARRMKDEEGFYYPHNLDFRG 594
ER ++ K+S + D Y P D G
Sbjct: 2832 ERTEKK--KTRKISQTAQTYDPREGYNPQPPDLSG 2864
>sp|Q00889|PSG6_HUMAN Pregnancy-specific beta-1-glycoprotein 6 OS=Homo sapiens GN=PSG6
PE=2 SV=1
Length = 435
Score = 34.7 bits (78), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 22/79 (27%), Positives = 36/79 (45%), Gaps = 4/79 (5%)
Query: 9 QIQYPPTCSTSTTTATRKALNIFNTKRDDGSSKILHFLHSCSSSSSSSSSFPVNLKSSSS 68
QI Y P S T + +L I N ++D S LH + + + F V L S +
Sbjct: 87 QIIYGPAYSGRETVYSNASLLIQNVTQEDAGSYTLHIIKRGDGTGGVTGYFTVTLYSETP 146
Query: 69 KP----TRLRPRPLQDSIQ 83
KP + L PR + ++++
Sbjct: 147 KPSISSSNLNPREVMEAVR 165
>sp|Q839A8|SYK_ENTFA Lysine--tRNA ligase OS=Enterococcus faecalis (strain ATCC 700802 /
V583) GN=lysS PE=3 SV=1
Length = 498
Score = 33.9 bits (76), Expect = 7.3, Method: Compositional matrix adjust.
Identities = 43/196 (21%), Positives = 78/196 (39%), Gaps = 21/196 (10%)
Query: 631 LKIHLANLFSGGVEKLSHDGRLAFVENHLYEIFDSAENPINGSRWWLTAEDPFQCLAACI 690
L++HL L GG+EK+ GR+ E D+ NP L A + +
Sbjct: 237 LELHLKRLIVGGMEKVYEIGRVFRNEG-----IDTTHNP---EFTMLEAYTAYTDYQDVM 288
Query: 691 NLSEALKSSSPHSVISHLPIHQDGSCNGLQHYAALGRNTLEAAAVNLVAGEKPADVYSEI 750
+L+E + ++ V+ I DG LG V+ V + D + E+
Sbjct: 289 DLTEGIIRNAAEKVLGTTDITYDGQA------VDLGSPFKRLHMVDAVKEQTGVDFWQEM 342
Query: 751 AVRVHEIMKRDSNKDPSKHPQALLAKILIDQVDRKLVKQTVM--TSVYGVTFVGAREQIK 808
+ + ++ N + + A+ +I++ V+ T+ T +YG A +
Sbjct: 343 TIEEARALAKEHNVEIT---DAMTVGHIINEFFETFVEDTLQQPTFIYGHPV--AVSPLA 397
Query: 809 RRLEEKGHITDDRQLF 824
++ E G TD +LF
Sbjct: 398 KKNPEDGRFTDRFELF 413
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.319 0.133 0.394
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 343,879,750
Number of Sequences: 539616
Number of extensions: 14406136
Number of successful extensions: 48732
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 36
Number of HSP's successfully gapped in prelim test: 61
Number of HSP's that attempted gapping in prelim test: 48088
Number of HSP's gapped (non-prelim): 381
length of query: 952
length of database: 191,569,459
effective HSP length: 127
effective length of query: 825
effective length of database: 123,038,227
effective search space: 101506537275
effective search space used: 101506537275
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 66 (30.0 bits)