BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 002217
(952 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1OBH|A Chain A, Leucyl-Trna Synthetase From Thermus Thermophilus Complexed
With A Pre-Transfer Editing Substrate Analogue In Both
Synthetic Active Site And Editing Site
pdb|2BTE|A Chain A, Thermus Thermophilus Leucyl-Trna Synthetase Complexed With
With A Trnaleu Transcript In The Post-Editing
Conformation And A Post-Transfer Editing Substrate
Analogue
pdb|2BTE|D Chain D, Thermus Thermophilus Leucyl-Trna Synthetase Complexed With
With A Trnaleu Transcript In The Post-Editing
Conformation And A Post-Transfer Editing Substrate
Analogue
pdb|2BYT|A Chain A, Thermus Thermophilus Leucyl-Trna Synthetase Complexed With
A Trnaleu Transcript In The Post-Editing Conformation
pdb|2BYT|D Chain D, Thermus Thermophilus Leucyl-Trna Synthetase Complexed With
A Trnaleu Transcript In The Post-Editing Conformation
pdb|1H3N|A Chain A, Leucyl-Trna Synthetase From Thermus Thermophilus Complexed
With A Sulphamoyl Analogue Of Leucyl-Adenylate
pdb|1OBC|A Chain A, Leucyl-Trna Synthetase From Thermus Thermophilus Complexed
With A Post-Transfer Editing Substrate Analogue
pdb|2V0G|A Chain A, Leucyl-Trna Synthetase From Thermus Thermophilus Complexed
With A Trna(Leu) Transcript With 5-Fluoro-1,3-Dihydro-1-
Hydroxy-2,1-Benzoxaborole (An2690) Forming An Adduct To
The Ribose Of Adenosine-76 In The Enzyme Editing Site.
pdb|2V0G|D Chain D, Leucyl-Trna Synthetase From Thermus Thermophilus Complexed
With A Trna(Leu) Transcript With 5-Fluoro-1,3-Dihydro-1-
Hydroxy-2,1-Benzoxaborole (An2690) Forming An Adduct To
The Ribose Of Adenosine-76 In The Enzyme Editing Site
Length = 878
Score = 698 bits (1802), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 387/893 (43%), Positives = 527/893 (59%), Gaps = 34/893 (3%)
Query: 64 YPFHEIEPKWQSYWENNRTFRTPDEIDTSKPKFYVLDMFPYPSGAGLHVGHPLGYTATDI 123
Y H IE KWQ +WE + F ++ + K YVL MFPYPSG LH+GH YT D+
Sbjct: 4 YNPHAIEAKWQRFWEE-KGFMKAKDLPGGRGKQYVLVMFPYPSG-DLHMGHLKNYTMGDV 61
Query: 124 LARLKRMQGYNVLHPMGWDAFGLPAEQYAIETGTHPKITTLRNINRFRTQLKSLGFSYDW 183
LAR +RMQGY VLHPMGWDAFGLPAE A++ G HPK T NI + + L+ +G YDW
Sbjct: 62 LARFRRMQGYEVLHPMGWDAFGLPAENAALKFGVHPKDWTYANIRQAKESLRLMGILYDW 121
Query: 184 NREISTIEPAYYKWTQWIFLQLLKRGLAYQAEVPVNWCPALGTVLANEEVVDGVSERG-G 242
+RE++T EP YY+W QWIFL++ ++GLAY+A+ VNWCP TVLANE+VV+G R
Sbjct: 122 DREVTTCEPEYYRWNQWIFLKMWEKGLAYRAKGLVNWCPKCQTVLANEQVVEGRCWRHED 181
Query: 243 HPVIRKPMRQWMLKITEYAXXXXXXXXXXXWPESVKEMQRNWIGRSEGAEMDFRVLDSDG 302
PV ++ + QW L+IT YA WPE VK MQR WIGRSEGAE+ F V
Sbjct: 182 TPVEKRELEQWYLRITAYAERLLKDLEGLNWPEKVKAMQRAWIGRSEGAEILFPV----- 236
Query: 303 QERDIKITVYTTRPDTIFGATYLVVAPEHPXXXXXXXXXXXXNIEEYKNLASRKSDLERT 362
+ ++++I V+TTRPDT+FGAT+LV+APEHP + Y A RK+++ER
Sbjct: 237 EGKEVRIPVFTTRPDTLFGATFLVLAPEHPLTLELAAPEKREEVLAYVEAAKRKTEIERQ 296
Query: 363 ELQKEKTGVFSGCYARNPASGEAIPIWVADYVLGSYGTGAIMAVPAHDTRDHEFALKFDI 422
+EKTGVF G YA NPA+GE IPIW ADYVL YGTGAIMAVPAHD RD+EFA KF +
Sbjct: 297 AEGREKTGVFLGAYALNPATGERIPIWTADYVLFGYGTGAIMAVPAHDQRDYEFARKFGL 356
Query: 423 SIHSVV-MPDDESSSQSEKAYTGEGLIVNSSNLISGLDINGLSCQEATSKVIEWAEKTGN 481
I V+ P + E+AY G++VNS +G +E KVI W E+ G
Sbjct: 357 PIKKVIERPGEPLPEPLERAYEEPGIMVNSGPF------DGTESEEGKRKVIAWLEEKGL 410
Query: 482 GKKKVNYKLRDWLFARQRYWGEPIPVVFLDGTGETVPLHEAELPLTLPELDDFTPT-GTG 540
GK +V Y+LRDWL +RQRYWG PIP+V + G VP+ E ELP+ LP+L D G
Sbjct: 411 GKGRVTYRLRDWLISRQRYWGTPIPMVHCEACG-VVPVPEEELPVLLPDLKDVEDIRPKG 469
Query: 541 EPPLSKAVSWVQTTEHSSGKPARRETSTMPQWAGSCWYYLRFMDPKNSKELVDKTKERYW 600
+ PL + +TT G PA+R+T TM + S WYYLR+ DP N + D K W
Sbjct: 470 KSPLEAHPEFYETTCPKCGGPAKRDTDTMDTFFDSSWYYLRYTDPHNDRLPFDPEKANAW 529
Query: 601 SPVDVYVGGAEHAVLHLLYARFWHKVLYDIGVVSTKEPFKCVINQGIILGEMQYMVCKDV 660
PVD Y+GG EHAVLHLLY+RF+ K L+D+G+V +EPF+ + QG++L + +V
Sbjct: 530 MPVDQYIGGVEHAVLHLLYSRFFTKFLHDLGMVKVEEPFQGLFTQGMVLAWTDFGPV-EV 588
Query: 661 DGSYIS-ADSTDTLGEYEQESIPEEKVMKSGDFFVMKDNPNIRLIARAHKMSKSRGNVVN 719
+GS + + T E + ++ E V K G ++ + L A MSKS+GN V
Sbjct: 589 EGSVVRLPEPTRIRLEIPESALSLEDVRKMGAELRPHEDGTLHLWKPA-VMSKSKGNGVM 647
Query: 720 PDDVVTEYGADSLRLYEMFMGPFRDSKTWNTSGIEGVHRFLGRMWRLIVGSSLP----DG 775
V E GAD R+ +F P + W G++G RFL R++R + G
Sbjct: 648 VGPFVKEQGADIARITILFAAPPENEMVWTEEGVQGAWRFLNRIYRRVAEDREALLETSG 707
Query: 776 TFKGGTVVNDEEPTLEQLCTLHKCIAKVTEEIEGTRFNTGISAMMEFINAAYKWEKHP-- 833
F+ + + E LH+ + KVTE++E RFNT I+A+MEF+NA Y++ K
Sbjct: 708 VFQAEALEGKDR---ELYGKLHETLKKVTEDLEALRFNTAIAALMEFLNALYEYRKDRPV 764
Query: 834 ----RKIIEPFILLLAPYAPHMSEELWFRLGHSNSLAYESFPKANPDYLKDSTIVLPIQI 889
R I ++ +L P+APH++EELW +SL +P+ + L+ + + +Q+
Sbjct: 765 TPVYRTAIRYYLQMLFPFAPHLAEELWHWF-WPDSLFEAGWPELDEKALEKDVVEVAVQV 823
Query: 890 NGKTRGTIQVEEGCSEEEAFKLASLDEKLSKFLDGKSIKKRIYVPGRILNVIL 942
NG+ RGTI + + E A A + L+GK + K IYVPG+ILN+++
Sbjct: 824 NGRVRGTIHIPKDAPLEVARAEALKVRNVRAHLEGKEVVKEIYVPGKILNLVV 876
>pdb|2V0C|A Chain A, Leucyl-Trna Synthetase From Thermus Thermophilus Complexed
With A Sulphamoyl Analogue Of Leucyl-Adenylate In The
Synthetic Site And An Adduct Of Amp With 5-Fluoro-1,3-
Dihydro-1-Hydroxy-2,1-Benzoxaborole (An2690) In The
Editing Site
Length = 878
Score = 694 bits (1792), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 386/893 (43%), Positives = 525/893 (58%), Gaps = 34/893 (3%)
Query: 64 YPFHEIEPKWQSYWENNRTFRTPDEIDTSKPKFYVLDMFPYPSGAGLHVGHPLGYTATDI 123
Y H IE KWQ +WE + F ++ + K YVL MFPYPSG LH+GH YT D+
Sbjct: 4 YNPHAIEAKWQRFWEE-KGFMKAKDLPGGRGKQYVLVMFPYPSG-DLHMGHLKNYTMGDV 61
Query: 124 LARLKRMQGYNVLHPMGWDAFGLPAEQYAIETGTHPKITTLRNINRFRTQLKSLGFSYDW 183
LAR +RMQGY VLHPMGWDAFGLPAE A++ G HPK T NI + + L+ +G YDW
Sbjct: 62 LARFRRMQGYEVLHPMGWDAFGLPAENAALKFGVHPKDWTYANIRQAKESLRLMGILYDW 121
Query: 184 NREISTIEPAYYKWTQWIFLQLLKRGLAYQAEVPVNWCPALGTVLANEEVVDGVSERG-G 242
+RE++T EP YY+W QWIFL++ ++GLAY+A+ VNWCP TVLANE+VV+G R
Sbjct: 122 DREVTTCEPEYYRWNQWIFLKMWEKGLAYRAKGLVNWCPKCQTVLANEQVVEGRCWRHED 181
Query: 243 HPVIRKPMRQWMLKITEYAXXXXXXXXXXXWPESVKEMQRNWIGRSEGAEMDFRVLDSDG 302
PV ++ + QW L+IT YA WPE VK MQR WIGRSEGAE+ F V
Sbjct: 182 TPVEKRELEQWYLRITAYAERLLKDLEGLNWPEKVKAMQRAWIGRSEGAEILFPV----- 236
Query: 303 QERDIKITVYTTRPDTIFGATYLVVAPEHPXXXXXXXXXXXXNIEEYKNLASRKSDLERT 362
+ ++++I V+TTRPDT+FGAT+LV+APEHP + Y A RK+++ER
Sbjct: 237 EGKEVRIPVFTTRPDTLFGATFLVLAPEHPLTLELAAPEKREEVLAYVEAAKRKTEIERQ 296
Query: 363 ELQKEKTGVFSGCYARNPASGEAIPIWVADYVLGSYGTGAIMAVPAHDTRDHEFALKFDI 422
+EKTGVF G YA NPA+GE IPIW ADYVL YGTGAIMAVPAHD RD+EFA KF +
Sbjct: 297 AEGREKTGVFLGAYALNPATGERIPIWTADYVLFGYGTGAIMAVPAHDQRDYEFARKFGL 356
Query: 423 SIHSVV-MPDDESSSQSEKAYTGEGLIVNSSNLISGLDINGLSCQEATSKVIEWAEKTGN 481
I V+ P + E+AY G++VNS +G +E KVI W E+ G
Sbjct: 357 PIKKVIERPGEPLPEPLERAYEEPGIMVNSGPF------DGTESEEGKRKVIAWLEEKGL 410
Query: 482 GKKKVNYKLRDWLFARQRYWGEPIPVVFLDGTGETVPLHEAELPLTLPELDDFTPT-GTG 540
GK +V Y+LRDWL +RQRYWG PIP+V + G VP+ E ELP+ LP+L D G
Sbjct: 411 GKGRVTYRLRDWLISRQRYWGTPIPMVHCEACG-VVPVPEEELPVLLPDLKDVEDIRPKG 469
Query: 541 EPPLSKAVSWVQTTEHSSGKPARRETSTMPQWAGSCWYYLRFMDPKNSKELVDKTKERYW 600
+ PL + +TT G PA+R+T TM + S WYYLR+ DP N + D K W
Sbjct: 470 KSPLEAHPEFYETTCPKCGGPAKRDTDTMDTFFDSSWYYLRYTDPHNDRLPFDPEKANAW 529
Query: 601 SPVDVYVGGAEHAVLHLLYARFWHKVLYDIGVVSTKEPFKCVINQGIILGEMQYMVCKDV 660
PVD Y+GG EHAVLHLLY+RF+ K L+D+G+V +EPF+ + QG++L + +V
Sbjct: 530 MPVDQYIGGVEHAVLHLLYSRFFTKFLHDLGMVKVEEPFQGLFTQGMVLAWTDFGPV-EV 588
Query: 661 DGSYIS-ADSTDTLGEYEQESIPEEKVMKSGDFFVMKDNPNIRLIARAHKMSKSRGNVVN 719
+GS + + T E + ++ E V K G ++ + L A MSKS+GN V
Sbjct: 589 EGSVVRLPEPTRIRLEIPESALSLEDVRKMGAELRPHEDGTLHLWKPA-VMSKSKGNGVM 647
Query: 720 PDDVVTEYGADSLRLYEMFMGPFRDSKTWNTSGIEGVHRFLGRMWRLIVGSSLP----DG 775
V E GAD R+ +F P + W G++G RFL R++R + G
Sbjct: 648 VGPFVKEQGADIARITILFAAPPENEMVWTEEGVQGAWRFLNRIYRRVAEDREALLETSG 707
Query: 776 TFKGGTVVNDEEPTLEQLCTLHKCIAKVTEEIEGTRFNTGISAMMEFINAAYKWEKHP-- 833
F+ + + E LH+ + KVTE++E RFNT I+A+MEF+NA Y++ K
Sbjct: 708 VFQAEALEGKDR---ELYGKLHETLKKVTEDLEALRFNTAIAALMEFLNALYEYRKDRPV 764
Query: 834 ----RKIIEPFILLLAPYAPHMSEELWFRLGHSNSLAYESFPKANPDYLKDSTIVLPIQI 889
R I ++ +L P+APH++EELW +SL +P+ + L+ + + +Q+
Sbjct: 765 TPVYRTAIRYYLQMLFPFAPHLAEELWHWF-WPDSLFEAGWPELDEKALEKDVVEVAVQV 823
Query: 890 NGKTRGTIQVEEGCSEEEAFKLASLDEKLSKFLDGKSIKKRIYVPGRILNVIL 942
NG GTI + + E A A + L+GK + K IYVPG+ILN+++
Sbjct: 824 NGAVAGTIHIPKDAPLEVARAEALKVRNVRAHLEGKEVVKEIYVPGKILNLVV 876
>pdb|4AQ7|A Chain A, Ternary Complex Of E. Coli Leucyl-Trna Synthetase,
Trna(Leu) And Leucyl-Adenylate Analogue In The
Aminoacylation Conformation
pdb|4AQ7|D Chain D, Ternary Complex Of E. Coli Leucyl-Trna Synthetase,
Trna(Leu) And Leucyl-Adenylate Analogue In The
Aminoacylation Conformation
pdb|4ARC|A Chain A, Ternary Complex Of E. Coli Leucyl-Trna Synthetase,
Trna(Leu) And Leucine In The Editing Conformation
pdb|4ARI|A Chain A, Ternary Complex Of E. Coli Leucyl-Trna Synthetase,
Trna(Leu) And The Benzoxaborole An2679 In The Editing
Conformation
pdb|4AS1|A Chain A, Ternary Complex Of E. Coli Leucyl-Trna Synthetase,
Trna(Leu) And The Benzoxaborole An2679 In The Editing
Conformation
pdb|3ZGZ|A Chain A, Ternary Complex Of E. Coli Leucyl-trna Synthetase,
Trna(leu) And Toxic Moiety From Agrocin 84 (tm84) In
Aminoacylation- Like Conformation
pdb|3ZGZ|D Chain D, Ternary Complex Of E. Coli Leucyl-trna Synthetase,
Trna(leu) And Toxic Moiety From Agrocin 84 (tm84) In
Aminoacylation- Like Conformation
Length = 880
Score = 622 bits (1605), Expect = e-178, Method: Compositional matrix adjust.
Identities = 358/897 (39%), Positives = 517/897 (57%), Gaps = 60/897 (6%)
Query: 64 YPFHEIEPKWQSYWENNRTFRTPDEIDTSKPKFYVLDMFPYPSGAGLHVGHPLGYTATDI 123
Y EIE K Q +W+ RTF + D SK K+Y L M PYPSG LH+GH YT D+
Sbjct: 25 YRPEEIESKVQLHWDEKRTFEVTE--DESKEKYYCLSMLPYPSGR-LHMGHVRNYTIGDV 81
Query: 124 LARLKRMQGYNVLHPMGWDAFGLPAEQYAIETGTHPKITTLRNINRFRTQLKSLGFSYDW 183
+AR +RM G NVL P+GWDAFGLPAE A++ T P T NI + QLK LGF YDW
Sbjct: 82 IARYQRMLGKNVLQPIGWDAFGLPAEGAAVKNNTAPAPWTYDNIAYMKNQLKMLGFGYDW 141
Query: 184 NREISTIEPAYYKWTQWIFLQLLKRGLAYQAEVPVNWCPALGTVLANEEVVDGVSERGGH 243
+RE++T P YY+W Q F +L K+GL Y+ VNWCP TVLANE+V+DG R
Sbjct: 142 SRELATCTPEYYRWEQKFFTELYKKGLVYKKTSAVNWCPNDQTVLANEQVIDGCCWRCDT 201
Query: 244 PVIRKPMRQWMLKITEYAXXXXXXXXXXX-WPESVKEMQRNWIGRSEGAEMDFRVLDSDG 302
V RK + QW +KIT YA WP++VK MQRNWIGRSEG E+ F V D D
Sbjct: 202 KVERKEIPQWFIKITAYADELLNDLDKLDHWPDTVKTMQRNWIGRSEGVEITFNVNDYDN 261
Query: 303 QERDIKITVYTTRPDTIFGATYLVVAPEHPXXXXXXXXX--XXXNIEEYKNLASRKSDLE 360
+TVYTTRPDT G TYL VA HP I+E +N ++++
Sbjct: 262 -----TLTVYTTRPDTFMGCTYLAVAAGHPLAQKAAENNPELAAFIDECRNTKVAEAEMA 316
Query: 361 RTELQKEKTGVFSGCYARNPASGEAIPIWVADYVLGSYGTGAIMAVPAHDTRDHEFALKF 420
EK GV +G A +P +GE IP+W A++VL YGTGA+MAVP HD RD+EFA K+
Sbjct: 317 TM----EKKGVDTGFKAVHPLTGEEIPVWAANFVLMEYGTGAVMAVPGHDQRDYEFASKY 372
Query: 421 DISIHSVVMPDDESSSQ-SEKAYTGEGLIVNSSNLISGLDINGLSCQEATSKVIEWAEKT 479
++I V++ D S S++A T +G++ NS + NGL + A + + +
Sbjct: 373 GLNIKPVILAADGSEPDLSQQALTEKGVLFNSG------EFNGLDHEAAFNAIADKLTAM 426
Query: 480 GNGKKKVNYKLRDWLFARQRYWGEPIPVVFLDGTGETVPLHEAELPLTLPELDDFTPTGT 539
G G++KVNY+LRDW +RQRYWG PIP+V L+ G +P + +LP+ LPE D G
Sbjct: 427 GVGERKVNYRLRDWGVSRQRYWGAPIPMVTLE-DGTVMPTPDDQLPVILPE--DVVMDGI 483
Query: 540 GEPPLSKAVSWVQTTEHSSGKPARRETSTMPQWAGSCWYYLRFMDPKNSKELVDKTKERY 599
P+ W +TT +G PA RET T + S WYY R+ P+ + ++D Y
Sbjct: 484 TS-PIKADPEWAKTT--VNGMPALRETDTFDTFMESSWYYARYTCPQYKEGMLDSEAANY 540
Query: 600 WSPVDVYVGGAEHAVLHLLYARFWHKVLYDIGVVSTKEPFKCVINQGIILGEMQYMVCKD 659
W PVD+Y+GG EHA++HLLY RF+HK++ D G+V++ EP K ++ QG++L + Y V ++
Sbjct: 541 WLPVDIYIGGIEHAIMHLLYFRFFHKLMRDAGMVNSDEPAKQLLCQGMVLADAFYYVGEN 600
Query: 660 VDGSYISADSTDTLGEYEQESIPEEKVMKSGDFFVMKDNPNIRLIARA-HKMSKSRGNVV 718
+ +++S D + E +++ +++K+ KD L+ KMSKS+ N +
Sbjct: 601 GERNWVS--PVDAIVERDEKG----RIVKA------KDAAGHELVYTGMSKMSKSKNNGI 648
Query: 719 NPDDVVTEYGADSLRLYEMFMGPFRDSKTWNTSGIEGVHRFLGRMWRLIVGSSLPDGTFK 778
+P +V YGAD++RL+ MF P + W SG+EG +RFL R+W+L+ + T K
Sbjct: 649 DPQVMVERYGADTVRLFMMFASPADMTLEWQESGVEGANRFLKRVWKLVY-----EHTAK 703
Query: 779 GGTVVNDEEPTLEQLCTL----HKCIAKVTEEIEGTR--FNTGISAMMEFINAAYKWE-- 830
G + + E L HK IAKVT++I G R FNT I+A+ME +N K
Sbjct: 704 GDVAALNVDALTENQKALRRDVHKTIAKVTDDI-GRRQTFNTAIAAIMELMNKLAKAPTD 762
Query: 831 -KHPRKIIEPFIL----LLAPYAPHMSEELWFRLGHSNSLAYESFPKANPDYLKDSTIVL 885
+ R +++ +L +L P+ PH+ LW L + +P A+ + + + ++
Sbjct: 763 GEQDRALMQEALLAVVRMLNPFTPHICFTLWQELKGEGDIDNAPWPVADEKAMVEDSTLV 822
Query: 886 PIQINGKTRGTIQVEEGCSEEEAFKLASLDEKLSKFLDGKSIKKRIYVPGRILNVIL 942
+Q+NGK R I V +EE+ + A + ++K+LDG +++K IYVPG++LN+++
Sbjct: 823 VVQVNGKVRAKITVPVDATEEQVRERAGQEHLVAKYLDGVTVRKVIYVPGKLLNLVV 879
>pdb|3ZIU|A Chain A, Crystal Structure Of Mycoplasma Mobile Leucyl-trna
Synthetase With Leu-ams In The Active Site
pdb|3ZIU|B Chain B, Crystal Structure Of Mycoplasma Mobile Leucyl-trna
Synthetase With Leu-ams In The Active Site
Length = 637
Score = 305 bits (780), Expect = 1e-82, Method: Compositional matrix adjust.
Identities = 139/231 (60%), Positives = 177/231 (76%), Gaps = 8/231 (3%)
Query: 64 YPFHEIEPKWQSYWENNRTFRTPDEIDTSKPKFYVLDMFPYPSGAGLHVGHPLGYTATDI 123
Y +EIE KWQ+ WE + F+T ++ SK KFY LDMFPYPSG+GLHVGHP GYTATDI
Sbjct: 9 YNHNEIEKKWQTRWEKTKAFKTTNK---SKDKFYALDMFPYPSGSGLHVGHPEGYTATDI 65
Query: 124 LARLKRMQGYNVLHPMGWDAFGLPAEQYAIETGTHPKITTLRNINRFRTQLKSLGFSYDW 183
++R KR++G++VLHP+GWDAFGLPAEQYA+ +G HP+ TL+NI FR QLKSLGFS+D+
Sbjct: 66 ISRYKRLKGFDVLHPIGWDAFGLPAEQYALSSGKHPQPFTLKNIENFRRQLKSLGFSFDY 125
Query: 184 NREISTIEPAYYKWTQWIFLQLLKRGLAYQAEVPVNWCPALGTVLANEEVVDG-----VS 238
+E++T +P+YY+WTQWIF Q+ K+GLA EV VNWCP LGTVLANEE+V+ VS
Sbjct: 126 EKEVNTTDPSYYRWTQWIFKQIYKKGLAEIREVDVNWCPGLGTVLANEEIVENDKGEMVS 185
Query: 239 ERGGHPVIRKPMRQWMLKITEYAXXXXXXXXXXXWPESVKEMQRNWIGRSE 289
ERG PV +KPM+QW+LKIT YA WP+S+K++Q NWIG+ E
Sbjct: 186 ERGSFPVYKKPMKQWVLKITNYADRLLEDLNLLDWPDSLKKLQTNWIGKEE 236
Score = 300 bits (769), Expect = 2e-81, Method: Compositional matrix adjust.
Identities = 176/466 (37%), Positives = 261/466 (56%), Gaps = 76/466 (16%)
Query: 485 KVNYKLRDWLFARQRYWGEPIPVVFLDGTGETVPLHEAELPLTLPELDDFTPTGTGEPPL 544
K+ YKL+DW+FARQRYWGEP PV F D + E + LP +++ P+GTGE PL
Sbjct: 240 KITYKLQDWIFARQRYWGEPFPVYF-DEDNNVYLIDEL---VELPHMENIMPSGTGEGPL 295
Query: 545 SKAVSWVQTTEHSSGKPARRETSTMPQWAGSCWYYLRF-MDPKNSKELVDKTKERY---- 599
+ WVQ +++ K +R+T+TMPQWAGSCWYYL + M ++ L +K+ Y
Sbjct: 296 ATNTEWVQYKKNN--KIFKRDTNTMPQWAGSCWYYLAYIMKQEDGTYLPIDSKKAYEAFS 353
Query: 600 -WSPVDVYVGGAEHAVLHLLYARFWHKVLYDIGVVSTKEPFKCVINQGIILGEMQYMVCK 658
W PVD+Y+GG EHAVLHLLYARFWHK+LYD+ +V TKEPF+ +INQG+ILG+
Sbjct: 354 KWLPVDLYIGGQEHAVLHLLYARFWHKILYDLKIVPTKEPFQKLINQGMILGK------- 406
Query: 659 DVDGSYISADSTDTLGEYEQESIPEEKVMKSGDFFVMKDNPNIRLIARAHKMSKSRGNVV 718
DG +S +LG NVV
Sbjct: 407 --DGQKMSK----SLG-----------------------------------------NVV 419
Query: 719 NPDDVVTEYGADSLRLYEMFMGPFRDSKTWNTSGIEGVHRFLGRMWRLIVGSSLPDGTFK 778
NPD+++ +GAD+LR+YEMFMGP D+K WN S +E ++++ R+ R+ + K
Sbjct: 420 NPDEIIQNFGADTLRVYEMFMGPLTDTKKWNESTVEATYKWILRVKRIF--QIFIEDKSK 477
Query: 779 GGTVVNDEEPTLEQLCTLHKCIAK-VTEEIEGTRFNTGISAMMEFINAAYKWEK-HPRKI 836
++ D +Q + H + K +T++IE +FN IS +M F+N+ YK EK + K
Sbjct: 478 INSLHKD-----DQFISEHNLLIKEITQDIEDLKFNIMISKLMIFVNSLYKKEKIYSLKP 532
Query: 837 IEPFILLLAPYAPHMSEELWFRLGHSNSLAYESFPKANPDYLKDSTIVLPIQINGKTRGT 896
++ F ++ + APH+SEEL LG + ++S+P + + + ++ IQ+NGK R T
Sbjct: 533 LKDFAIMFSTIAPHISEELLESLGEK-EIMFQSWPTYENNKILLTKDIVAIQVNGKLRET 591
Query: 897 IQVEEGCSEEEAFKLASLDEKLSKFLDGKSIKKRIYVPGRILNVIL 942
++E E+ + A + K L+ K IKK IY+ +ILN I+
Sbjct: 592 FEIENDWDEKRVIEEAKKLPNVKKHLENKIIKKEIYIAKKILNFII 637
>pdb|3O0A|A Chain A, Crystal Structure Of The Wild Type Cp1 Hydrolitic Domain
From Aquifex Aeolicus Leucyl-Trna
pdb|3O0A|B Chain B, Crystal Structure Of The Wild Type Cp1 Hydrolitic Domain
From Aquifex Aeolicus Leucyl-Trna
Length = 219
Score = 159 bits (402), Expect = 6e-39, Method: Compositional matrix adjust.
Identities = 98/228 (42%), Positives = 131/228 (57%), Gaps = 32/228 (14%)
Query: 286 GRSEGAEMDFRV----------------LDSDGQERDIKITVYTTRPDTIFGATYLVVAP 329
GRSEGA + F V ++ +E+ I I V+TTRPDT+FGAT++V+AP
Sbjct: 1 GRSEGALIRFYVEIEEPEKFLNCVPEELKETLLKEKRIYIDVFTTRPDTVFGATFVVLAP 60
Query: 330 EHPXXXXXXX------XXXXXNIEEYKNLASRKSDLERTELQKEKTGVFSGCYARNPASG 383
EHP ++E + + S ERT ++++K GVF G YA NPA+G
Sbjct: 61 EHPLVPVLACIGERLGNACYSDVENFVEKMKKMSTRERT-MEEDKEGVFLGVYATNPANG 119
Query: 384 EAIPIWVADYVLGSYGTGAIMAVPAHDTRDHEFALKFDISIHSVVMPDDESSSQSEK-AY 442
E IP+W A+YVL YGTGAIM VPAHD RD EFA K+D+ I VV P E + EK AY
Sbjct: 120 EKIPVWSANYVLYEYGTGAIMCVPAHDQRDWEFAKKYDLPIKVVVKP--EGAWDFEKGAY 177
Query: 443 TGEGLIVNSSNLISGLDINGLSCQEATSKVIEWAEKTGNGKKKVNYKL 490
G+G +VNS +GL + A K+ EW + G G+KKV+Y+L
Sbjct: 178 EGKGTLVNSDGF------DGLDSETAKRKITEWLQDRGLGEKKVSYRL 219
>pdb|3PZ0|A Chain A, The Crystal Structure Of Aaleurs-Cp1
pdb|3PZ0|B Chain B, The Crystal Structure Of Aaleurs-Cp1
pdb|3PZ0|C Chain C, The Crystal Structure Of Aaleurs-Cp1
pdb|3PZ0|D Chain D, The Crystal Structure Of Aaleurs-Cp1
Length = 221
Score = 153 bits (387), Expect = 4e-37, Method: Compositional matrix adjust.
Identities = 88/191 (46%), Positives = 116/191 (60%), Gaps = 16/191 (8%)
Query: 303 QERDIKITVYTTRPDTIFGATYLVVAPEHPXXXXXXX------XXXXXNIEEYKNLASRK 356
+E+ I I V+TTRPDT+FGAT++V+APEHP ++E + +
Sbjct: 40 KEKRIYIDVFTTRPDTVFGATFVVLAPEHPLVPVLACIGERLGNACYSDVENFVEKMKKM 99
Query: 357 SDLERTELQKEKTGVFSGCYARNPASGEAIPIWVADYVLGSYGTGAIMAVPAHDTRDHEF 416
S ERT ++++K GVF G YA NPA+GE IP+W A+YVL YGTGAIM VPAHD RD EF
Sbjct: 100 STRERT-MEEDKEGVFLGVYATNPANGEKIPVWSANYVLYEYGTGAIMCVPAHDQRDWEF 158
Query: 417 ALKFDISIHSVVMPDDESSSQSEK-AYTGEGLIVNSSNLISGLDINGLSCQEATSKVIEW 475
A K+D+ I VV P E + EK AY G+G +VNS +GL + A K+ EW
Sbjct: 159 AKKYDLPIKVVVKP--EGAWDFEKGAYEGKGTLVNSDGF------DGLDSETAKRKITEW 210
Query: 476 AEKTGNGKKKV 486
+ G G+KKV
Sbjct: 211 LQDRGLGEKKV 221
>pdb|3PZ5|A Chain A, The Crystal Structure Of Aaleurs-Cp1-D20
pdb|3PZ5|B Chain B, The Crystal Structure Of Aaleurs-Cp1-D20
Length = 201
Score = 151 bits (382), Expect = 2e-36, Method: Compositional matrix adjust.
Identities = 93/206 (45%), Positives = 121/206 (58%), Gaps = 20/206 (9%)
Query: 288 SEGAEMDFRVLDSDGQERDIKITVYTTRPDTIFGATYLVVAPEHPXXXXXXX------XX 341
+EGA + F V E I I V+TTRPDT+FGAT++V+APEHP
Sbjct: 9 AEGALIRFYV----EIEELIYIDVFTTRPDTVFGATFVVLAPEHPLVPVLACIGERLGNA 64
Query: 342 XXXNIEEYKNLASRKSDLERTELQKEKTGVFSGCYARNPASGEAIPIWVADYVLGSYGTG 401
++E + + S ERT ++++K GVF G YA NPA+GE IP+W A+YVL YGTG
Sbjct: 65 CYSDVENFVEKMKKMSTRERT-MEEDKEGVFLGVYATNPANGEKIPVWSANYVLYEYGTG 123
Query: 402 AIMAVPAHDTRDHEFALKFDISIHSVVMPDDESSSQSEK-AYTGEGLIVNSSNLISGLDI 460
AIM VPAHD RD EFA K+D+ I VV P E + EK AY G+G +VNS
Sbjct: 124 AIMCVPAHDQRDWEFAKKYDLPIKVVVKP--EGAWDFEKGAYEGKGTLVNSDGF------ 175
Query: 461 NGLSCQEATSKVIEWAEKTGNGKKKV 486
+GL + A K+ EW + G G+KKV
Sbjct: 176 DGLDSETAKRKITEWLQDRGLGEKKV 201
>pdb|2AJG|A Chain A, Crystal Structure Of The Editing Domain Of E. Coli Leucyl-
Trna Synthetase
pdb|2AJG|B Chain B, Crystal Structure Of The Editing Domain Of E. Coli Leucyl-
Trna Synthetase
pdb|2AJH|A Chain A, Crystal Structure Of The Editing Domain Of E. Coli Leucyl-
Trna Synthetase Complexes With Methionine
pdb|2AJH|B Chain B, Crystal Structure Of The Editing Domain Of E. Coli Leucyl-
Trna Synthetase Complexes With Methionine
pdb|2AJI|A Chain A, Crystal Structure Of The Editing Domain Of E. Coli Leucyl-
Trna Synthetase Complexes With Isoleucine
pdb|2AJI|B Chain B, Crystal Structure Of The Editing Domain Of E. Coli Leucyl-
Trna Synthetase Complexes With Isoleucine
Length = 196
Score = 128 bits (321), Expect = 2e-29, Method: Composition-based stats.
Identities = 77/201 (38%), Positives = 110/201 (54%), Gaps = 18/201 (8%)
Query: 289 EGAEMDFRVLDSDGQERDIKITVYTTRPDTIFGATYLVVAPEHPXXXXXXXXXXXXN--I 346
EG E+ F V D D +TVYTTRPDT G TYL VA HP I
Sbjct: 11 EGVEITFNVNDYDNT-----LTVYTTRPDTFMGCTYLAVAAGHPLAQKAAENNPELAAFI 65
Query: 347 EEYKNLASRKSDLERTELQKEKTGVFSGCYARNPASGEAIPIWVADYVLGSYGTGAIMAV 406
+E +N ++++ E K GV +G A +P +GE IP+W A++VL YGTGA+MAV
Sbjct: 66 DECRNTKVAEAEMATME----KKGVDTGFKAVHPLTGEEIPVWAANFVLMEYGTGAVMAV 121
Query: 407 PAHDTRDHEFALKFDISIHSVVMPDDESSSQ-SEKAYTGEGLIVNSSNLISGLDINGLSC 465
P HD RD+EFA K+ ++I V++ D S S++A T +G++ NS + NGL
Sbjct: 122 PGHDQRDYEFASKYGLNIKPVILAADGSEPDLSQQALTEKGVLFNSG------EFNGLDH 175
Query: 466 QEATSKVIEWAEKTGNGKKKV 486
+ A + + + G G++KV
Sbjct: 176 EAAFNAIADKLTAMGVGERKV 196
>pdb|1WKB|A Chain A, Crystal Structure Of Leucyl-Trna Synthetase From The
Archaeon Pyrococcus Horikoshii Reveals A Novel Editing
Domain Orientation
Length = 810
Score = 119 bits (298), Expect = 8e-27, Method: Compositional matrix adjust.
Identities = 119/455 (26%), Positives = 177/455 (38%), Gaps = 101/455 (22%)
Query: 66 FHEIEPKWQSYWENNRTFRTPDEIDTSKPKFYVLDMFPYPSGAGLHVGHPLGYTATDILA 125
F IE KWQ W + F + KFY+ FPY SG LHVGH YT D++A
Sbjct: 6 FKAIEEKWQKRWLEAKIFEPNIRDKPKEKKFYITVAFPYLSG-HLHVGHARTYTIPDVIA 64
Query: 126 RLKRMQGYNVLHPMGWDAFGLPAEQYA--IETGTHPKITTLRN---------------IN 168
R KRMQGYNVL PM W G P A I+ I R+ IN
Sbjct: 65 RFKRMQGYNVLFPMAWHITGSPIVGIAERIKNRDPKTIWIYRDVYKVPEEILWTFEDPIN 124
Query: 169 RFRTQLKSL-------GFSYDWNREIST--IEPAYYKWTQWIFLQLLKRGLAYQAEVPVN 219
+ +K+ GFS DW+RE T + P + K+ +W F +L ++G + V
Sbjct: 125 IVKYFMKAAKETFIRAGFSVDWSREFYTTSLFPPFSKFIEWQFWKLKEKGYIVKGAHRVR 184
Query: 220 WCPALGTVLANEEVVDGVSERGGHPVIRKPMRQWMLKITEYAXXXXXXXXXXXWPESVKE 279
W P +GT L G H ++
Sbjct: 185 WDPVVGTPL------------GDHDLM--------------------------------- 199
Query: 280 MQRNWIGRSEGAE---MDFRVLDSDGQERD--IKITVYTTRPDTIFGATYLVVAPEHPXX 334
EG + +D+ ++ + +E I + T RP+T++G T + V P
Sbjct: 200 ---------EGEDVPILDYIIIKFELRENGEVIYLPAATLRPETVYGVTNMWVNPNATYV 250
Query: 335 XXXXXXXXXXNIEEYKNLASRK---SDLERTELQKEKTGVFSGCYARNPASGEAIPIWVA 391
A+ K D E +++ K G Y RNP SG+ + I A
Sbjct: 251 KAKVRRKDKEETWIVSKEAAYKLSFQDREIEVIEEFKGEKLIGKYVRNPVSGDEVIILPA 310
Query: 392 DYVLGSYGTGAIMAVPAHDTRDHEFALKFDISIHSVVMPDDESSSQSEKAYTGEGLIVNS 451
++V TG +M+VPAH DH V + D + ++ + Y + IV +
Sbjct: 311 EFVDPDNATGVVMSVPAHAPFDH------------VALEDLKRETEILEKYDIDPRIVEN 358
Query: 452 SNLISGLDINGLSCQEATSKVIEWAEKTGNGKKKV 486
IS + + G A +V + K+ K+K+
Sbjct: 359 ITYISLIKLEGYGDFPAVEEVNKLGIKSQKDKEKL 393
Score = 68.2 bits (165), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 48/167 (28%), Positives = 75/167 (44%), Gaps = 17/167 (10%)
Query: 707 AHKMSKSRGNVVNPDDVVTEYGADSLRLYEMFMGPFRDSKTWNTSGIEGVHRFLGRMWRL 766
KMSKS+GNV+N D + E GAD +RLY M + W + + + + R + L
Sbjct: 648 GQKMSKSKGNVLNFIDAIEENGADVVRLYIMSLAEHDSDFDWRRKEVGKLRKQIERFYEL 707
Query: 767 IVGSSLPDGTFKGGTVVNDEEPTLEQLCTLHKCIAKVTEEIEGTRFNTGISAMMEFINAA 826
I S + KG + D + + L L+K I + T +E R T + I
Sbjct: 708 I--SQFAEYEVKGNVELKDIDRWM--LHRLNKAIKETTNALEEFRTRTAVQWAFYSIMND 763
Query: 827 YKWEKHP-------------RKIIEPFILLLAPYAPHMSEELWFRLG 860
+W R + + ++ L+AP+ PH+ EELW +LG
Sbjct: 764 LRWYLRRTEGRDDEAKRYVLRTLADVWVRLMAPFTPHICEELWEKLG 810
>pdb|1WZ2|A Chain A, The Crystal Structure Of Leucyl-Trna Synthetase And
Trna(Leucine) Complex
pdb|1WZ2|B Chain B, The Crystal Structure Of Leucyl-Trna Synthetase And
Trna(Leucine) Complex
Length = 967
Score = 110 bits (276), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 117/455 (25%), Positives = 174/455 (38%), Gaps = 101/455 (22%)
Query: 66 FHEIEPKWQSYWENNRTFRTPDEIDTSKPKFYVLDMFPYPSGAGLHVGHPLGYTATDILA 125
F IE KWQ W + F + KFY+ FPY SG LHVGH YT D++A
Sbjct: 6 FKAIEEKWQKRWLEAKIFEPNIRDKPKEKKFYITVAFPYLSG-HLHVGHARTYTIPDVIA 64
Query: 126 RLKRMQGYNVLHPMGWDAFGLPAEQYA--IETGTHPKITTLRN---------------IN 168
R KRMQGYNVL PM W G P A I+ I R+ IN
Sbjct: 65 RFKRMQGYNVLFPMAWHITGSPIVGIAERIKNRDPKTIWIYRDVYKVPEEILWTFEDPIN 124
Query: 169 RFRTQLKSL-------GFSYDWNREIST--IEPAYYKWTQWIFLQLLKRGLAYQAEVPVN 219
+ +K+ GFS DW+RE T + P + K+ +W F +L ++G
Sbjct: 125 IVKYFMKAAKETFIRAGFSVDWSREFYTTSLFPPFSKFIEWQFWKLKEKGY--------- 175
Query: 220 WCPALGTVLANEEVVDGVSERGGHPVIRKPMRQWMLKITEYAXXXXXXXXXXXWPESVKE 279
+V G PV+ P+ L
Sbjct: 176 -------------IVKGAHRVRWDPVVGTPLGDHDL------------------------ 198
Query: 280 MQRNWIGRSEGAE---MDFRVLDSDGQERD--IKITVYTTRPDTIFGATYLVVAPEHPXX 334
EG + +D+ ++ + +E I + T RP+T++G T + V P
Sbjct: 199 --------MEGEDVPILDYIIIKFELRENGEVIYLPAATLRPETVYGVTNMWVNPNATYV 250
Query: 335 XXXXXXXXXXNIEEYKNLASRK---SDLERTELQKEKTGVFSGCYARNPASGEAIPIWVA 391
A+ K D E +++ K G Y RNP SG+ + I A
Sbjct: 251 KAKVRRKDKEETWIVSKEAAYKLSFQDREIEVIEEFKGEKLIGKYVRNPVSGDEVIILPA 310
Query: 392 DYVLGSYGTGAIMAVPAHDTRDHEFALKFDISIHSVVMPDDESSSQSEKAYTGEGLIVNS 451
++V TG +M+VPAH DH V + D + ++ + Y + IV +
Sbjct: 311 EFVDPDNATGVVMSVPAHAPFDH------------VALEDLKRETEILEKYDIDPRIVEN 358
Query: 452 SNLISGLDINGLSCQEATSKVIEWAEKTGNGKKKV 486
IS + + G A +V + K+ K+K+
Sbjct: 359 ITYISLIKLEGYGDFPAVEEVNKLGIKSQKDKEKL 393
Score = 70.1 bits (170), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 49/179 (27%), Positives = 80/179 (44%), Gaps = 17/179 (9%)
Query: 707 AHKMSKSRGNVVNPDDVVTEYGADSLRLYEMFMGPFRDSKTWNTSGIEGVHRFLGRMWRL 766
KMSKS+GNV+N D + E GAD +RLY M + W + + + + R + L
Sbjct: 648 GQKMSKSKGNVLNFIDAIEENGADVVRLYIMSLAEHDSDFDWRRKEVGKLRKQIERFYEL 707
Query: 767 IVGSSLPDGTFKGGTVVNDEEPTLEQLCTLHKCIAKVTEEIEGTRFNTGISAMMEFINAA 826
I S + KG + D + + L L+K I + T +E R T + I
Sbjct: 708 I--SQFAEYEVKGNVELKDIDRWM--LHRLNKAIKETTNALEEFRTRTAVQWAFYSIMND 763
Query: 827 YKWEKHP-------------RKIIEPFILLLAPYAPHMSEELWFRLGHSNSLAYESFPK 872
+W R + + ++ L+AP+ PH+ EELW +LG ++ +P+
Sbjct: 764 LRWYLRRTEGRDDEAKRYVLRTLADVWVRLMAPFTPHICEELWEKLGGEGFVSLAKWPE 822
>pdb|1QU2|A Chain A, Insights Into Editing From An Ile-Trna Synthetase
Structure With Trna(Ile) And Mupirocin
pdb|1QU3|A Chain A, Insights Into Editing From An Ile-Trna Synthetase
Structure With Trna(Ile) And Mupirocin
pdb|1FFY|A Chain A, Insights Into Editing From An Ile-Trna Synthetase
Structure With Trna(Ile) And Mupirocin
Length = 917
Score = 102 bits (255), Expect = 8e-22, Method: Compositional matrix adjust.
Identities = 162/741 (21%), Positives = 249/741 (33%), Gaps = 218/741 (29%)
Query: 70 EPKWQSYWENNRTFRTPDEIDTSKPKFYVLDMFPYPSGAGLHVGHPLGYTATDILARLKR 129
EP+ Q W+ + E + F + D PY +G LH+GH L D + R K
Sbjct: 24 EPQIQEKWDAEDQYHKALEKNKGNETFILHDGPPYANG-NLHMGHALNKILKDFIVRYKT 82
Query: 130 MQGYNVLHPMGWDAFGLPAEQYAIETGT-HPKITT-----------LRNINRFRTQLKSL 177
MQG+ + GWD GLP EQ + G K++T L I + + L
Sbjct: 83 MQGFYAPYVPGWDTHGLPIEQALTKKGVDRKKMSTAEFREKCKEFALEQIELQKKDFRRL 142
Query: 178 GFSYDWNREISTIEPAYYKWTQWIFLQLLKRGLAYQAEVPVNWCPALGTVLANEEVVDGV 237
G D+N T++P Y IF ++ +GL Y+ + PV W P+ + LA E+
Sbjct: 143 GVRGDFNDPYITLKPEYEAAQIRIFGEMADKGLIYKGKKPVYWSPSSESSLAEAEI---- 198
Query: 238 SERGGHPVIRKPMRQWMLKITEYAXXXXXXXXXXXWPESVKEMQRNWIGRSEGAEMDFRV 297
EY RS + F V
Sbjct: 199 ---------------------EYHDK-----------------------RSASIYVAFNV 214
Query: 298 LDSDG-QERDIKITVYTTRPDTIFGATYLVVAPEHPXXXXXXXXXXXXNIEEYKNLASRK 356
D G + D K ++TT P TI + V PE E + +
Sbjct: 215 KDDKGVVDADAKFIIWTTTPWTIPSNVAITVHPELKYGQYNVNGEKYIIAEALSDAVAEA 274
Query: 357 SDLERT--ELQKEKTGV-FSGCYARNPASGEAIPIWVADYVLGSYGTGAIMAVPAHDTRD 413
D ++ +L+KE TG A++P + D+V GTG + P H D
Sbjct: 275 LDWDKASIKLEKEYTGKELEWVVAQHPFLDRESLVINGDHVTTDAGTGCVHTAPGHGEDD 334
Query: 414 HEFALKFDISIHSVVMPDDESSSQSEKAYTGEGLIVNSSNL------------------- 454
+ ++++ V+ P D+ +E+ EG+ + +N
Sbjct: 335 YIVGQQYEL---PVISPIDDKGVFTEEGGQFEGMFYDKANKAVTDLLTEKGALLKLDFIT 391
Query: 455 ------------------------ISGLDINGLSCQEATSKVIEWAEKTGNGKKKVNYKL 490
IS + + L E T+ + W GK ++ +
Sbjct: 392 HSYPHDWRTKKPVIFRATPQWFASISKVRQDILDAIENTNFKVNW------GKTRIYNMV 445
Query: 491 RD---WLFARQRYWGEPIPVVFLDG-----TGETVPLHEAELPLTL-------PELDDFT 535
RD W+ +RQR WG P+PV + + T ETV H A+L E D
Sbjct: 446 RDRGEWVISRQRVWGVPLPVFYAENGEIIMTKETVN-HVADLFAEHGSNIWFEREAKDLL 504
Query: 536 PTGTGEPPLSKAVSWVQTTEHSSGKPARRETSTMPQWAGSCWYYLRFMDPKNSKELVDKT 595
P G P S +ET M W D +S V +T
Sbjct: 505 PEGFTHPG-------------SPNGTFTKETDIMDVW----------FDSGSSHRGVLET 541
Query: 596 KERYWSPVDVYVGGAEHAVLHLLYARFWHKVLYDIGVVSTK-EPFKCVINQGIILGEMQY 654
+ P D+Y+ G++ R W V + P+K +++ G ++
Sbjct: 542 RPELSFPADMYLEGSDQ-------YRGWFNSSITTSVATRGVSPYKFLLSHGFVM----- 589
Query: 655 MVCKDVDGSYISADSTDTLGEYEQESIPEEKVMKSGDFFVMKDNPNIRLIARAHKMSKSR 714
D +G +S KS
Sbjct: 590 ----DGEGKKMS---------------------------------------------KSL 600
Query: 715 GNVVNPDDVVTEYGADSLRLY 735
GNV+ PD VV + GAD RL+
Sbjct: 601 GNVIVPDQVVKQKGADIARLW 621
>pdb|1GAX|A Chain A, Crystal Structure Of Thermus Thermophilus Valyl-Trna
Synthetase Complexed With Trna(Val) And Valyl-Adenylate
Analogue
pdb|1GAX|B Chain B, Crystal Structure Of Thermus Thermophilus Valyl-Trna
Synthetase Complexed With Trna(Val) And Valyl-Adenylate
Analogue
pdb|1IVS|A Chain A, Crystal Structure Of Thermus Thermophilus Valyl-Trna
Synthetase Complexed With Trna(Val) And Valyl-Adenylate
Analogue
pdb|1IVS|B Chain B, Crystal Structure Of Thermus Thermophilus Valyl-Trna
Synthetase Complexed With Trna(Val) And Valyl-Adenylate
Analogue
pdb|1IYW|A Chain A, Preliminary Structure Of Thermus Thermophilus Ligand-Free
Valyl-Trna Synthetase
pdb|1IYW|B Chain B, Preliminary Structure Of Thermus Thermophilus Ligand-Free
Valyl-Trna Synthetase
Length = 862
Score = 84.3 bits (207), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 61/190 (32%), Positives = 87/190 (45%), Gaps = 24/190 (12%)
Query: 62 RAYPFHEIEPKWQSYWENNRTFRTPDEIDTSKPKFYVLDMFPYPSGAG-LHVGHPLGYTA 120
+AY +EPKW W N P + KP F + P P+ G LH+GH L +
Sbjct: 5 KAYDPKSVEPKWAEKWAKNPFVANPK---SGKPPFVIF--MPPPNVTGSLHMGHALDNSL 59
Query: 121 TDILARLKRMQGYNVLHPMGWDAFGLPAEQYAIETGTHPKITTLRNINRFR--------- 171
D L R KRM+G+ + G D G+ A Q +E + T ++ R +
Sbjct: 60 QDALIRYKRMRGFEAVWLPGTDHAGI-ATQVVVERLLLKEGKTRHDLGREKFLERVWQWK 118
Query: 172 --------TQLKSLGFSYDWNREISTIEPAYYKWTQWIFLQLLKRGLAYQAEVPVNWCPA 223
QLK LG S DW+RE T++ + ++ F + GLAY+A VNWCP
Sbjct: 119 EESGGTILKQLKRLGASADWSREAFTMDEKRSRAVRYAFSRYYHEGLAYRAPRLVNWCPR 178
Query: 224 LGTVLANEEV 233
T L++ EV
Sbjct: 179 CETTLSDLEV 188
Score = 47.0 bits (110), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 45/193 (23%), Positives = 84/193 (43%), Gaps = 30/193 (15%)
Query: 703 LIARAHKMSKSRGNVVNPDDVVTEYGADSLRLYEMFMGPFRDSKTWNTSGIEGVHRFLGR 762
L + KMSKS+GNV++P ++V YGAD+LR +++ + +E F +
Sbjct: 522 LDEKGQKMSKSKGNVIDPLEMVERYGADALRFALIYLATGGQDIRLDLRWLEMARNFANK 581
Query: 763 MW---RLIVGSSLPDGTFKGGTVVNDEEPTL-------------EQLCTLHKC--IAKVT 804
++ R ++ S + G ++ PTL E++ L++ +A+
Sbjct: 582 LYNAARFVLLS-------REGFQAKEDTPTLADRFMRSRLSRGVEEITALYEALDLAQAA 634
Query: 805 EEIEGTRFNTGISAMMEFINAAYKW-EKHPRKIIEP----FILLLAPYAPHMSEELWFRL 859
E+ ++ +E A K H + +E + LL P P ++ EL+ L
Sbjct: 635 REVYELVWSEFCDWYLEAAKPALKAGNAHTLRTLEEVLAVLLKLLHPMMPFLTSELYQAL 694
Query: 860 GHSNSLAYESFPK 872
LA E++P+
Sbjct: 695 TGKEELALEAWPE 707
Score = 45.4 bits (106), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 96/452 (21%), Positives = 162/452 (35%), Gaps = 125/452 (27%)
Query: 309 ITVYTTRPDTIFGATYLVVAPEHPXXXXXXXXXXXXNIEEYKNLASRKSDLERTELQKEK 368
I + T RP+T+F + V PE E Y++L ++
Sbjct: 210 IEIATVRPETVFADQAIAVHPED---------------ERYRHLLGKR------------ 242
Query: 369 TGVFSGCYARNPASGEAIPIWVADYVLGSYGTGAIMAVPAHDTRDHEFALKFDISIHSVV 428
AR P + IPI V +GTGA+ PAHD D+E + + SV+
Sbjct: 243 --------ARIPLTEVWIPILADPAVEKDFGTGALKVTPAHDPLDYEIGERHGLKPVSVI 294
Query: 429 ----------MPDD-------ESSSQSEKAYTGEGLIVNSSNLISGLDINGLSCQEATSK 471
+P+ E+ ++ + + G +V + L C
Sbjct: 295 NLEGRMEGERVPEALRGLDRFEARRKAVELFREAGHLVKEEDYTIALATCS-RCGTPIEY 353
Query: 472 VI--EW-------AEKTGNGK------------KKVNY----KLRDWLFARQRYWGEPIP 506
I +W AE+ G KKVN ++DW +RQ +WG IP
Sbjct: 354 AIFPQWWLRMRPLAEEVLKGLRRGDIAFVPERWKKVNMDWLENVKDWNISRQLWWGHQIP 413
Query: 507 VVFL-DGTGETVPLHEAELPLTLPELDDFTPTGTGEPPLSKAVSWVQTTEHSSGKPARRE 565
+ D VP E L D + G P L +R+
Sbjct: 414 AWYCEDCQAVNVPRPERYLE------DPTSCEACGSPRL------------------KRD 449
Query: 566 TSTMPQWAGSCWYYLRFMD-PKNSKELVDKTKERYWSPVDVYVGGAEHAVLHLLYARFWH 624
W S + L + P+ +++L + + P DV V G + +L L +R
Sbjct: 450 EDVFDTWFSSALWPLSTLGWPEETEDL------KAFYPGDVLVTG--YDILFLWVSRMEV 501
Query: 625 KVLYDIGVVSTKEPFKCVINQGIILGEMQYMVCKDVDGSYISADSTDTLGEYEQESIPEE 684
+ +G + PFK V+ G++L E + K G+ I D + + Y ++
Sbjct: 502 SGYHFMG----ERPFKTVLLHGLVLDEKGQKMSKS-KGNVI--DPLEMVERYGADA---- 550
Query: 685 KVMKSGDFFVMKDNPNIRLIARAHKMSKSRGN 716
++ ++ +IRL R +M+++ N
Sbjct: 551 --LRFALIYLATGGQDIRLDLRWLEMARNFAN 580
>pdb|1JZQ|A Chain A, Isoleucyl-Trna Synthetase Complexed With Isoleucyl-
Adenylate Analogue
pdb|1JZS|A Chain A, Isoleucyl-trna Synthetase Complexed With Mupirocin
pdb|1ILE|A Chain A, Isoleucyl-Trna Synthetase
Length = 821
Score = 73.2 bits (178), Expect = 7e-13, Method: Compositional matrix adjust.
Identities = 57/208 (27%), Positives = 88/208 (42%), Gaps = 25/208 (12%)
Query: 66 FHEIEPKWQSYWENNRTFRTPDEIDTSKPKFYVLDMFPYPSGAGLHVGHPLGYTATDILA 125
F ++E + ++W+ + F+ E P++ V + P +G HVGH + D+
Sbjct: 10 FPKLEEEVLAFWKREKIFQKSVENRKGGPRYTVYEGPPTANGLP-HVGHAQARSYKDLFP 68
Query: 126 RLKRMQGYNVLHPMGWDAFGLPAEQYAIETGTHPKITTLR-----NINRFRTQLKSLGFS 180
R K M+GY GWD GLP E +E + + R I RF + F+
Sbjct: 69 RYKTMRGYYAPRRAGWDTHGLPVE---LEVEKKLGLKSKREIEAYGIERFNQACRESVFT 125
Query: 181 Y---------------DWNREISTIEPAYYKWTQWIFLQLLKRGLAYQAEVPVNWCPALG 225
Y D +T+EP Y + W L RGL Y+ V +CP G
Sbjct: 126 YEKEWEAFTERIAYWVDLEDAYATLEPTYIESIWWSLKNLFDRGLLYRDHKVVPYCPRCG 185
Query: 226 TVLANEEVVDGVSERGGHPV-IRKPMRQ 252
T L++ EV G E V +R P+++
Sbjct: 186 TPLSSHEVALGYKEIQDPSVYVRFPLKE 213
Score = 55.5 bits (132), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 55/217 (25%), Positives = 94/217 (43%), Gaps = 37/217 (17%)
Query: 703 LIARAHKMSKSRGNVVNPDDVVTEYGADSLRLYEMFMGPFRDSKTWNTSGI-EGVHRFLG 761
L + KMSKS+GNVV+P D++ ++GAD+LR Y P + + + + E V +
Sbjct: 585 LDEKGQKMSKSKGNVVDPWDIIRKFGADALRWYIYVSAPPEADRRFGPNLVRETVRDYFL 644
Query: 762 RMWRL----IVGSSLPDGTFKGGTVVNDEEPTLEQ--LCTLHKCIAKVTEEIEGTRFNTG 815
+W + + ++L K ++ P +++ L + I +VTE +E T
Sbjct: 645 TLWNVYSFFVTYANLDRPDLKNPP-PPEKRPEMDRWLLARMQDLIQRVTEALEAYDPTTS 703
Query: 816 ISAMMEFI-----------NAAYKW--------EKHPRKIIEPFIL---LLAPYAPHMSE 853
A+ +F+ N W E + E +L L AP+ P ++E
Sbjct: 704 ARALRDFVVEDLSQWYVRRNRRRFWKNEDALDREAAYATLYEALVLVATLAAPFTPFLAE 763
Query: 854 ELW------FRLGHSNSLAYESFPKANPDYLKDSTIV 884
LW RL S+ +P+A+P L D +V
Sbjct: 764 VLWQNLVRSVRLEAKESVHLADWPEADPA-LADEALV 799
Score = 31.6 bits (70), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 11/26 (42%), Positives = 15/26 (57%)
Query: 490 LRDWLFARQRYWGEPIPVVFLDGTGE 515
L DW +R RYWG P+P+ G+
Sbjct: 441 LVDWALSRNRYWGTPLPIWVCQACGK 466
>pdb|2CSX|A Chain A, Crystal Structure Of Aquifex Aeolicus Methionyl-Trna
Synthetase Complexed With Trna(Met)
pdb|2CSX|B Chain B, Crystal Structure Of Aquifex Aeolicus Methionyl-Trna
Synthetase Complexed With Trna(Met)
pdb|2CT8|A Chain A, Crystal Structure Of Aquifex Aeolicus Methionyl-Trna
Synthetase Complexed With Trna(Met) And
Methionyl-Adenylate Anologue
pdb|2CT8|B Chain B, Crystal Structure Of Aquifex Aeolicus Methionyl-Trna
Synthetase Complexed With Trna(Met) And
Methionyl-Adenylate Anologue
Length = 497
Score = 62.4 bits (150), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 43/131 (32%), Positives = 60/131 (45%), Gaps = 3/131 (2%)
Query: 91 TSKPKFYVLDMFPYPSGAGLHVGHPLGYTATDILARLKRMQGYNVLHPMGWDAFGLPAEQ 150
T KFYV Y + H+GH A D +AR R++ Y+V G D GL ++
Sbjct: 2 TLMKKFYVTTPIYYVNDVP-HLGHAYTTIAADTIARYYRLRDYDVFFLTGTDEHGLKIQK 60
Query: 151 YAIETGTHPKITTLRNINRFRTQLKSLGFSYDWNREISTIEPAYYKWTQWIFLQLLKRGL 210
A E G PK RN RF+ + L Y + I T +P + K+ Q +F + KRG
Sbjct: 61 KAEELGISPKELVDRNAERFKKLWEFLKIEY--TKFIRTTDPYHVKFVQKVFEECYKRGD 118
Query: 211 AYQAEVPVNWC 221
Y E +C
Sbjct: 119 IYLGEYEGWYC 129
Score = 42.4 bits (98), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 35/134 (26%), Positives = 60/134 (44%), Gaps = 16/134 (11%)
Query: 709 KMSKSRGNVVNPDDVVTEYGADSLRLYEMFMGPFRDSKTWNTSGIEGVHRF-------LG 761
KMSK+ GNVV+P +VV EYG D +R + + PF ++ I ++R +G
Sbjct: 295 KMSKTLGNVVDPYEVVQEYGLDEVRYFLLREVPFGQDGDFSKKAI--LNRINGELANEIG 352
Query: 762 RMWRLIVGSSLPDGTFKGGTVVNDEEPTLEQLCTLHKCIAKVTEEIEGTRFNTGISAMME 821
++ +V + F GG V + ++ + I +E F I +++
Sbjct: 353 NLYSRVVNMA---HKFLGGEVSGARDEEYAKIA--QESIKNYENYMEKVNFYKAIEEILK 407
Query: 822 FINAAYKW--EKHP 833
F + K+ EK P
Sbjct: 408 FTSYLNKYVDEKQP 421
>pdb|4DLP|A Chain A, Crystal Structure Of Methionyl-Trna Synthetase Metrs From
Brucella Melitensis Bound To Selenomethionine
pdb|4DLP|B Chain B, Crystal Structure Of Methionyl-Trna Synthetase Metrs From
Brucella Melitensis Bound To Selenomethionine
pdb|4DLP|C Chain C, Crystal Structure Of Methionyl-Trna Synthetase Metrs From
Brucella Melitensis Bound To Selenomethionine
Length = 536
Score = 61.6 bits (148), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 40/122 (32%), Positives = 60/122 (49%), Gaps = 3/122 (2%)
Query: 92 SKPKFYVLDMFPYPSGAGLHVGHPLGYTATDILARLKRMQGYNVLHPMGWDAFGLPAEQY 151
S+ K+Y+ YP+G H+GH ATD +AR +R+ G +V G D G+ Q
Sbjct: 23 SREKYYITTAIAYPNGKP-HIGHAYELIATDAMARFQRLNGMDVYFLTGTDEHGIKMLQS 81
Query: 152 AIETGTHPKITTLRNINRFRTQLKSLGFSYDWNREISTIEPAYYKWTQWIFLQLLKRGLA 211
A + G P+ RN + FR + L S D I T E +YK +Q I+ ++ G
Sbjct: 82 ARKEGITPRDLADRNTSAFRRMAEVLNSSND--DYIRTSEERHYKASQAIWQAMVANGDI 139
Query: 212 YQ 213
Y+
Sbjct: 140 YK 141
Score = 42.7 bits (99), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 21/51 (41%), Positives = 29/51 (56%)
Query: 703 LIARAHKMSKSRGNVVNPDDVVTEYGADSLRLYEMFMGPFRDSKTWNTSGI 753
L R KMSKS GNV++P ++V YG D LR + M PF +++ I
Sbjct: 315 LFNRGEKMSKSVGNVIDPFELVERYGLDQLRYFLMREVPFGQDGSYSHEAI 365
>pdb|2X1L|A Chain A, Crystal Structure Of Mycobacterium Smegmatis
Methionyl-Trna Synthetase In Complex With Methionine And
Adenosine
pdb|2X1L|B Chain B, Crystal Structure Of Mycobacterium Smegmatis
Methionyl-Trna Synthetase In Complex With Methionine And
Adenosine
pdb|2X1L|C Chain C, Crystal Structure Of Mycobacterium Smegmatis
Methionyl-Trna Synthetase In Complex With Methionine And
Adenosine
pdb|2X1M|A Chain A, Crystal Structure Of Mycobacterium Smegmatis
Methionyl-Trna Synthetase In Complex With Methionine
Length = 524
Score = 58.9 bits (141), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 37/117 (31%), Positives = 58/117 (49%), Gaps = 3/117 (2%)
Query: 96 FYVLDMFPYPSGAGLHVGHPLGYTATDILARLKRMQGYNVLHPMGWDAFGLPAEQYAIET 155
FY+ YP+G H+GH Y ATD +AR KR+ GY+V + G D G + A +
Sbjct: 14 FYITTAIAYPNGVP-HIGHAYEYIATDAIARFKRLDGYDVRYLTGTDVHGQKMAETAAKE 72
Query: 156 GTHPKITTLRNINRFRTQLKSLGFSYDWNREISTIEPAYYKWTQWIFLQLLKRGLAY 212
G RN + F+ + L S+D R I T + +Y+ ++ I+ ++ G Y
Sbjct: 73 GIPAAELARRNSDVFQRLQEKLNISFD--RFIRTSDADHYEASKAIWKRMADAGDIY 127
Score = 42.7 bits (99), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 21/53 (39%), Positives = 31/53 (58%)
Query: 703 LIARAHKMSKSRGNVVNPDDVVTEYGADSLRLYEMFMGPFRDSKTWNTSGIEG 755
L+ R KMSKS GNVV+P ++V +G D +R + + PF ++N I G
Sbjct: 304 LLNRGEKMSKSIGNVVDPVNLVDTFGLDQVRYFLLREVPFGQDGSYNEDAIIG 356
>pdb|1WOY|A Chain A, Crystal Structure Of Methionyl Trna Synthetase Y225f
Mutant From Thermus Thermophilus
pdb|2D5B|A Chain A, Crystal Structure Of Thermus Thermophilus Methionyl Trna
Synthetase Y225f Mutant Obtained In The Presence Of
Peg6000
Length = 500
Score = 58.5 bits (140), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 43/157 (27%), Positives = 64/157 (40%), Gaps = 2/157 (1%)
Query: 104 YPSGAGLHVGHPLGYTATDILARLKRMQGYNVLHPMGWDAFGLPAEQYAIETGTHPKITT 163
Y A H+GH D LAR R+ GY G D G + A G PK
Sbjct: 12 YYVNAEPHLGHAYTTVVADFLARWHRLDGYRTFFLTGTDEHGETVYRAAQAAGEDPKAFV 71
Query: 164 LRNINRFRTQLKSLGFSYDWNREISTIEPAYYKWTQWIFLQLLKRGLAYQAEVPVNWCPA 223
R RF+ LG +YD I T E + K Q + ++ + G Y E +C +
Sbjct: 72 DRVSGRFKRAWDLLGIAYD--DFIRTTEERHKKVVQLVLKKVYEAGDIYYGEYEGLYCVS 129
Query: 224 LGTVLANEEVVDGVSERGGHPVIRKPMRQWMLKITEY 260
+E+V+G+ G PV R+ + ++ +Y
Sbjct: 130 CERFYTEKELVEGLCPIHGRPVERRKEGNYFFRMEKY 166
Score = 36.6 bits (83), Expect = 0.070, Method: Compositional matrix adjust.
Identities = 21/63 (33%), Positives = 32/63 (50%), Gaps = 9/63 (14%)
Query: 680 SIPEEKVMKSGDFFVMKDNPNIRLIARAHKMSKSRGNVVNPDDVVTEYGADSLRLYEMFM 739
IP + + G F + D KMSK+ GNVV+P ++ +YG D+LR Y +
Sbjct: 277 GIPMYRHLNVGGFLLGPDG---------RKMSKTLGNVVDPFALLEKYGRDALRYYLLRE 327
Query: 740 GPF 742
P+
Sbjct: 328 IPY 330
>pdb|1A8H|A Chain A, Methionyl-Trna Synthetase From Thermus Thermophilus
Length = 500
Score = 58.5 bits (140), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 43/157 (27%), Positives = 64/157 (40%), Gaps = 2/157 (1%)
Query: 104 YPSGAGLHVGHPLGYTATDILARLKRMQGYNVLHPMGWDAFGLPAEQYAIETGTHPKITT 163
Y A H+GH D LAR R+ GY G D G + A G PK
Sbjct: 12 YYVNAEPHLGHAYTTVVADFLARWHRLDGYRTFFLTGTDEHGETVYRAAQAAGEDPKAFV 71
Query: 164 LRNINRFRTQLKSLGFSYDWNREISTIEPAYYKWTQWIFLQLLKRGLAYQAEVPVNWCPA 223
R RF+ LG +YD I T E + K Q + ++ + G Y E +C +
Sbjct: 72 DRVSGRFKRAWDLLGIAYD--DFIRTTEERHKKVVQLVLKKVYEAGDIYYGEYEGLYCVS 129
Query: 224 LGTVLANEEVVDGVSERGGHPVIRKPMRQWMLKITEY 260
+E+V+G+ G PV R+ + ++ +Y
Sbjct: 130 CERFYTEKELVEGLCPIHGRPVERRKEGNYFFRMEKY 166
Score = 36.6 bits (83), Expect = 0.069, Method: Compositional matrix adjust.
Identities = 21/63 (33%), Positives = 32/63 (50%), Gaps = 9/63 (14%)
Query: 680 SIPEEKVMKSGDFFVMKDNPNIRLIARAHKMSKSRGNVVNPDDVVTEYGADSLRLYEMFM 739
IP + + G F + D KMSK+ GNVV+P ++ +YG D+LR Y +
Sbjct: 277 GIPMYRHLNVGGFLLGPDG---------RKMSKTLGNVVDPFALLEKYGRDALRYYLLRE 327
Query: 740 GPF 742
P+
Sbjct: 328 IPY 330
>pdb|2D54|A Chain A, Crystal Structure Of Methionyl Trna Synthetase Y225a
Mutant From Thermus Thermophilus
Length = 502
Score = 58.5 bits (140), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 43/157 (27%), Positives = 64/157 (40%), Gaps = 2/157 (1%)
Query: 104 YPSGAGLHVGHPLGYTATDILARLKRMQGYNVLHPMGWDAFGLPAEQYAIETGTHPKITT 163
Y A H+GH D LAR R+ GY G D G + A G PK
Sbjct: 12 YYVNAEPHLGHAYTTVVADFLARWHRLDGYRTFFLTGTDEHGETVYRAAQAAGEDPKAFV 71
Query: 164 LRNINRFRTQLKSLGFSYDWNREISTIEPAYYKWTQWIFLQLLKRGLAYQAEVPVNWCPA 223
R RF+ LG +YD I T E + K Q + ++ + G Y E +C +
Sbjct: 72 DRVSGRFKRAWDLLGIAYD--DFIRTTEERHKKVVQLVLKKVYEAGDIYYGEYEGLYCVS 129
Query: 224 LGTVLANEEVVDGVSERGGHPVIRKPMRQWMLKITEY 260
+E+V+G+ G PV R+ + ++ +Y
Sbjct: 130 CERFYTEKELVEGLCPIHGRPVERRKEGNYFFRMEKY 166
Score = 36.6 bits (83), Expect = 0.070, Method: Compositional matrix adjust.
Identities = 21/63 (33%), Positives = 32/63 (50%), Gaps = 9/63 (14%)
Query: 680 SIPEEKVMKSGDFFVMKDNPNIRLIARAHKMSKSRGNVVNPDDVVTEYGADSLRLYEMFM 739
IP + + G F + D KMSK+ GNVV+P ++ +YG D+LR Y +
Sbjct: 277 GIPMYRHLNVGGFLLGPDG---------RKMSKTLGNVVDPFALLEKYGRDALRYYLLRE 327
Query: 740 GPF 742
P+
Sbjct: 328 IPY 330
>pdb|3KFL|A Chain A, Leishmania Major Methionyl-Trna Synthetase In Complex With
Methionyladenylate And Pyrophosphate
Length = 564
Score = 51.2 bits (121), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 39/141 (27%), Positives = 60/141 (42%), Gaps = 3/141 (2%)
Query: 104 YPSGAGLHVGHPLGYTATDILARLKRMQGYNVLHPMGWDAFGLPAEQYAIETGTHPKITT 163
Y A H+GH D+L R R++G V G D G + A + G P T
Sbjct: 35 YYVNASPHIGHVYSTLIVDVLGRYHRVKGEEVFVMTGTDEHGQKVAEAAAKQGVSPMDFT 94
Query: 164 LRNINRFRTQLKSLGFSYDWNREISTIEPAYYKWTQWIFLQLLKRGLAYQAEVPVNWCPA 223
+ F+ + + +YD N I T P + K Q I+ +L +G Y + + +
Sbjct: 95 TSVSSEFKQCFQEM--NYDMNYFIRTTNPTHEKLVQDIWKKLAAKGDIYLGKYEGWYSVS 152
Query: 224 LGTVLANEEVVDGVSERGGHP 244
+ L + V DGV +R G P
Sbjct: 153 DESFLTAQNVADGV-DRDGKP 172
Score = 31.6 bits (70), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 17/55 (30%), Positives = 29/55 (52%), Gaps = 2/55 (3%)
Query: 709 KMSKSRGNVVNPDDVVTEYGADSLRLYEMFMGPFRDSKTWNTSGIEGVHRFLGRM 763
K+SKS GN +P + E+G D+L+ + M F+D ++ + V R G +
Sbjct: 339 KISKSLGNAFDPVEKAKEFGIDALKYFLMRESNFQDDGDYSDKNM--VARLNGEL 391
>pdb|1F4L|A Chain A, Crystal Structure Of The E.Coli Methionyl-Trna Synthetase
Complexed With Methionine
Length = 551
Score = 43.1 bits (100), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 38/155 (24%), Positives = 61/155 (39%), Gaps = 9/155 (5%)
Query: 95 KFYVLDMFPYPSGAGLHVGHPLGYTATDILARLKRMQGYNVLHPMGWDAFGLPAEQYAIE 154
K V PY +G+ +H+GH L + D+ R +RM+G+ V DA G P A +
Sbjct: 7 KILVTCALPYANGS-IHLGHMLEHIQADVWVRYQRMRGHEVNFICADDAHGTPIMLKAQQ 65
Query: 155 TGTHPKITTLRNINRFRTQLKSLGFSYDWNREISTIEPAYYKWTQWIFLQLLKRGLAYQA 214
G P+ +T SYD ST + ++ I+ +L + G
Sbjct: 66 LGITPEQMIGEMSQEHQTDFAGFNISYD--NYHSTHSEENRQLSELIYSRLKENGFIKNR 123
Query: 215 EVPVNWCPALGTVLANEEVVDGVSERGGHPVIRKP 249
+ + P G L + V +G P + P
Sbjct: 124 TISQLYDPEKGMFLPDRFV------KGTCPKCKSP 152
>pdb|1P7P|A Chain A, Methionyl-trna Synthetase From Escherichia Coli Complexed
With Methionine Phosphonate
pdb|1PFU|A Chain A, Methionyl-Trna Synthetase From Escherichia Coli Complexed
With Methionine Phosphinate
pdb|1PFV|A Chain A, Methionyl-Trna Synthetase From Escherichia Coli Complexed
With Difluoromethionine
pdb|1PFW|A Chain A, Methionyl-Trna Synthetase From Escherichia Coli Complexed
With Trifluoromethionine
pdb|1PFY|A Chain A, Methionyl-Trna Synthetase From Escherichia Coli Complexed
With Methionyl Sulphamoyl Adenosine
pdb|1PG0|A Chain A, Methionyl-Trna Synthetase From Escherichia Coli Complexed
With Methioninyl Adenylate
pdb|1PG2|A Chain A, Methionyl-Trna Synthetase From Escherichia Coli Complexed
With Methionine And Adenosine
Length = 551
Score = 42.7 bits (99), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 38/155 (24%), Positives = 61/155 (39%), Gaps = 9/155 (5%)
Query: 95 KFYVLDMFPYPSGAGLHVGHPLGYTATDILARLKRMQGYNVLHPMGWDAFGLPAEQYAIE 154
K V PY +G+ +H+GH L + D+ R +RM+G+ V DA G P A +
Sbjct: 6 KILVTCALPYANGS-IHLGHMLEHIQADVWVRYQRMRGHEVNFICADDAHGTPIMLKAQQ 64
Query: 155 TGTHPKITTLRNINRFRTQLKSLGFSYDWNREISTIEPAYYKWTQWIFLQLLKRGLAYQA 214
G P+ +T SYD ST + ++ I+ +L + G
Sbjct: 65 LGITPEQMIGEMSQEHQTDFAGFNISYD--NYHSTHSEENRQLSELIYSRLKENGFIKNR 122
Query: 215 EVPVNWCPALGTVLANEEVVDGVSERGGHPVIRKP 249
+ + P G L + V +G P + P
Sbjct: 123 TISQLYDPEKGMFLPDRFV------KGTCPKCKSP 151
>pdb|1QQT|A Chain A, Methionyl-Trna Synthetase From Escherichia Coli
Length = 551
Score = 42.7 bits (99), Expect = 9e-04, Method: Compositional matrix adjust.
Identities = 38/155 (24%), Positives = 61/155 (39%), Gaps = 9/155 (5%)
Query: 95 KFYVLDMFPYPSGAGLHVGHPLGYTATDILARLKRMQGYNVLHPMGWDAFGLPAEQYAIE 154
K V PY +G+ +H+GH L + D+ R +RM+G+ V DA G P A +
Sbjct: 6 KILVTCALPYANGS-IHLGHMLEHIQADVWVRYQRMRGHEVNFICADDAHGTPIMLKAQQ 64
Query: 155 TGTHPKITTLRNINRFRTQLKSLGFSYDWNREISTIEPAYYKWTQWIFLQLLKRGLAYQA 214
G P+ +T SYD ST + ++ I+ +L + G
Sbjct: 65 LGITPEQMIGEMSQEHQTDFAGFNISYD--NYHSTHSEENRQLSELIYSRLKENGFIKNR 122
Query: 215 EVPVNWCPALGTVLANEEVVDGVSERGGHPVIRKP 249
+ + P G L + V +G P + P
Sbjct: 123 TISQLYDPEKGMFLPDRFV------KGTCPKCKSP 151
>pdb|3H9C|A Chain A, Structure Of Methionyl-Trna Synthetase: Crystal Form 2
Length = 547
Score = 42.7 bits (99), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 38/155 (24%), Positives = 61/155 (39%), Gaps = 9/155 (5%)
Query: 95 KFYVLDMFPYPSGAGLHVGHPLGYTATDILARLKRMQGYNVLHPMGWDAFGLPAEQYAIE 154
K V PY +G+ +H+GH L + D+ R +RM+G+ V DA G P A +
Sbjct: 6 KILVTCALPYANGS-IHLGHMLEHIQADVWVRYQRMRGHEVNFICADDAHGTPIMLKAQQ 64
Query: 155 TGTHPKITTLRNINRFRTQLKSLGFSYDWNREISTIEPAYYKWTQWIFLQLLKRGLAYQA 214
G P+ +T SYD ST + ++ I+ +L + G
Sbjct: 65 LGITPEQMIGEMSQEHQTDFAGFNISYD--NYHSTHSEENRQLSELIYSRLKENGFIKNR 122
Query: 215 EVPVNWCPALGTVLANEEVVDGVSERGGHPVIRKP 249
+ + P G L + V +G P + P
Sbjct: 123 TISQLYDPEKGMFLPDRFV------KGTCPKCKSP 151
>pdb|3H97|A Chain A, Structure Of A Mutant Methionyl-trna Synthetase With
Modified Specificity
pdb|3H99|A Chain A, Structure Of A Mutant Methionyl-Trna Synthetase With
Modified Specificity Complexed With Methionine
pdb|3H9B|A Chain A, Structure Of A Mutant Methionyl-Trna Synthetase With
Modified Specificity Complexed With Azidonorleucine
Length = 560
Score = 41.6 bits (96), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 36/147 (24%), Positives = 59/147 (40%), Gaps = 9/147 (6%)
Query: 103 PYPSGAGLHVGHPLGYTATDILARLKRMQGYNVLHPMGWDAFGLPAEQYAIETGTHPKIT 162
PY +G+ +H+GH L + D+ R +RM+G+ V DA G P A + G P+
Sbjct: 27 PYANGS-IHLGHMLEHIQADVWVRYQRMRGHEVNFICADDAHGTPIMLKAQQLGITPEQM 85
Query: 163 TLRNINRFRTQLKSLGFSYDWNREISTIEPAYYKWTQWIFLQLLKRGLAYQAEVPVNWCP 222
+T SYD ST + ++ I+ +L + G + + P
Sbjct: 86 IGEMSQEHQTDFAGFNISYD--NYHSTHSEENRQLSELIYSRLKENGFIKNRTISQLYDP 143
Query: 223 ALGTVLANEEVVDGVSERGGHPVIRKP 249
G L + V +G P + P
Sbjct: 144 EKGMFLPDRFV------KGTCPKCKSP 164
>pdb|3TUN|A Chain A, Trypanosoma Brucei Methionyl-Trna Synthetase In Complex
With Inhibitor Chem 1356
pdb|3TUN|B Chain B, Trypanosoma Brucei Methionyl-Trna Synthetase In Complex
With Inhibitor Chem 1356
pdb|4EG4|A Chain A, Trypanosoma Brucei Methionyl-Trna Synthetase In Complex
With Inhibitor Chem 1289
pdb|4EG4|B Chain B, Trypanosoma Brucei Methionyl-Trna Synthetase In Complex
With Inhibitor Chem 1289
pdb|4EG7|A Chain A, Trypanosoma Brucei Methionyl-Trna Synthetase In Complex
With Inhibitor Chem 1331
pdb|4EG7|B Chain B, Trypanosoma Brucei Methionyl-Trna Synthetase In Complex
With Inhibitor Chem 1331
pdb|4EGA|A Chain A, Trypanosoma Brucei Methionyl-Trna Synthetase In Complex
With Inhibitor Chem 1320
pdb|4EGA|B Chain B, Trypanosoma Brucei Methionyl-Trna Synthetase In Complex
With Inhibitor Chem 1320
pdb|3U1Z|A Chain A, Trypanosoma Brucei Methionyl-Trna Synthetase In Complex
With Inhibitor Chem 1433
pdb|3U1Z|B Chain B, Trypanosoma Brucei Methionyl-Trna Synthetase In Complex
With Inhibitor Chem 1433
Length = 542
Score = 39.3 bits (90), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 34/166 (20%), Positives = 64/166 (38%), Gaps = 11/166 (6%)
Query: 104 YPSGAGLHVGHPLGYTATDILARLKRMQGYNVLHPMGWDAFGLPAEQYAIETGTHPKITT 163
Y A H+GH TD++ R R++G V G D G + A + P T
Sbjct: 18 YYVNAAPHIGHVYSTLITDVIGRYHRVKGERVFALTGTDEHGQKVAEAAKQKQVSPYDFT 77
Query: 164 LRNINRFRTQLKSLGFSYDWNREISTIEPAYYKWTQWIFLQLLKRGLAYQAEVPVNWCPA 223
F+ + + +S D+ I T + + ++ +L ++G Y + +
Sbjct: 78 TAVAGEFKKXFEQMDYSIDYF--IRTTNEQHKAVVKELWTKLEQKGDIYLGRYEGWYSIS 135
Query: 224 LGTVLANEEVVDGVSERG---------GHPVIRKPMRQWMLKITEY 260
+ L + + DGV + G GH V +M +++ +
Sbjct: 136 DESFLTPQNITDGVDKDGNPCKVSLESGHVVTWVSEENYMFRLSAF 181
Score = 30.4 bits (67), Expect = 5.1, Method: Compositional matrix adjust.
Identities = 14/41 (34%), Positives = 24/41 (58%)
Query: 709 KMSKSRGNVVNPDDVVTEYGADSLRLYEMFMGPFRDSKTWN 749
K+SKS GNV +P + E+G D+L+ + + F D ++
Sbjct: 323 KISKSLGNVFDPVEKAEEFGYDALKYFLLRESGFSDDGDYS 363
>pdb|1WK9|A Chain A, Structural Basis For Non-Cognate Amino Acid Discrimination
By The Valyl-Trna Synthetase Editing Domain
Length = 146
Score = 39.3 bits (90), Expect = 0.011, Method: Composition-based stats.
Identities = 31/120 (25%), Positives = 46/120 (38%), Gaps = 35/120 (29%)
Query: 309 ITVYTTRPDTIFGATYLVVAPEHPXXXXXXXXXXXXNIEEYKNLASRKSDLERTELQKEK 368
I + T RP+T+F + V PE E Y++L ++
Sbjct: 19 IEIATVRPETVFADQAIAVHPED---------------ERYRHLLGKR------------ 51
Query: 369 TGVFSGCYARNPASGEAIPIWVADYVLGSYGTGAIMAVPAHDTRDHEFALKFDISIHSVV 428
AR P + IPI V +GTGA+ PAHD D+E + + SV+
Sbjct: 52 --------ARIPLTEVWIPILADPAVEKDFGTGALKVTPAHDPLDYEIGERHGLKPVSVI 103
>pdb|1WKA|A Chain A, Structural Basis For Non-Cognate Amino Acid Discrimination
By The Valyl-Trna Synthetase Editing Domain
Length = 147
Score = 39.3 bits (90), Expect = 0.012, Method: Composition-based stats.
Identities = 31/120 (25%), Positives = 46/120 (38%), Gaps = 35/120 (29%)
Query: 309 ITVYTTRPDTIFGATYLVVAPEHPXXXXXXXXXXXXNIEEYKNLASRKSDLERTELQKEK 368
I + T RP+T+F + V PE E Y++L ++
Sbjct: 19 IEIATVRPETVFADQAIAVHPED---------------ERYRHLLGKR------------ 51
Query: 369 TGVFSGCYARNPASGEAIPIWVADYVLGSYGTGAIMAVPAHDTRDHEFALKFDISIHSVV 428
AR P + IPI V +GTGA+ PAHD D+E + + SV+
Sbjct: 52 --------ARIPLTEVWIPILADPAVEKDFGTGALKVTPAHDPLDYEIGERHGLKPVSVI 103
>pdb|4EG5|A Chain A, Trypanosoma Brucei Methionyl-Trna Synthetase In Complex
With Inhibitor Chem 1312
pdb|4EG5|B Chain B, Trypanosoma Brucei Methionyl-Trna Synthetase In Complex
With Inhibitor Chem 1312
Length = 542
Score = 38.9 bits (89), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 34/166 (20%), Positives = 64/166 (38%), Gaps = 11/166 (6%)
Query: 104 YPSGAGLHVGHPLGYTATDILARLKRMQGYNVLHPMGWDAFGLPAEQYAIETGTHPKITT 163
Y A H+GH TD++ R R++G V G D G + A + P T
Sbjct: 18 YYVNAAPHIGHVYSTLITDVIGRYHRVKGERVFALTGTDEHGQKVAEAAKQKQVSPYDFT 77
Query: 164 LRNINRFRTQLKSLGFSYDWNREISTIEPAYYKWTQWIFLQLLKRGLAYQAEVPVNWCPA 223
F+ + + +S D+ I T + + ++ +L ++G Y + +
Sbjct: 78 TAVAGEFKKCFEQMDYSIDYF--IRTTNEQHKAVVKELWTKLEQKGDIYLGRYEGWYSIS 135
Query: 224 LGTVLANEEVVDGVSERG---------GHPVIRKPMRQWMLKITEY 260
+ L + + DGV + G GH V +M +++ +
Sbjct: 136 DESFLTPQNITDGVDKDGNPCKVSLESGHVVTWVSEENYMFRLSAF 181
Score = 30.4 bits (67), Expect = 5.0, Method: Compositional matrix adjust.
Identities = 14/41 (34%), Positives = 24/41 (58%)
Query: 709 KMSKSRGNVVNPDDVVTEYGADSLRLYEMFMGPFRDSKTWN 749
K+SKS GNV +P + E+G D+L+ + + F D ++
Sbjct: 323 KISKSLGNVFDPVEKAEEFGYDALKYFLLRESGFSDDGDYS 363
>pdb|4EG1|A Chain A, Trypanosoma Brucei Methionyl-Trna Synthetase In Complex
With Substrate Methionine
pdb|4EG1|B Chain B, Trypanosoma Brucei Methionyl-Trna Synthetase In Complex
With Substrate Methionine
pdb|4EG3|A Chain A, Trypanosoma Brucei Methionyl-Trna Synthetase In Complex
With Product Methionyl-Adenylate
pdb|4EG3|B Chain B, Trypanosoma Brucei Methionyl-Trna Synthetase In Complex
With Product Methionyl-Adenylate
pdb|4EG6|A Chain A, Trypanosoma Brucei Methionyl-Trna Synthetase In Complex
With Inhibitor Chem 1325
pdb|4EG6|B Chain B, Trypanosoma Brucei Methionyl-Trna Synthetase In Complex
With Inhibitor Chem 1325
pdb|4EG8|A Chain A, Trypanosoma Brucei Methionyl-Trna Synthetase In Complex
With Compound Chem 89
pdb|4EG8|B Chain B, Trypanosoma Brucei Methionyl-Trna Synthetase In Complex
With Compound Chem 89
pdb|3U1E|A Chain A, Trypanosoma Brucei Methionyl-Trna Synthetase In Complex
With Inhibitor Chem 1387
pdb|3U1E|B Chain B, Trypanosoma Brucei Methionyl-Trna Synthetase In Complex
With Inhibitor Chem 1387
pdb|3U1F|A Chain A, Trypanosoma Brucei Methionyl-Trna Synthetase In Complex
With Inhibitor Chem 1392
pdb|3U1F|B Chain B, Trypanosoma Brucei Methionyl-Trna Synthetase In Complex
With Inhibitor Chem 1392
pdb|3U1G|A Chain A, Trypanosoma Brucei Methionyl-Trna Synthetase In Complex
With Inhibitor Chem 1415
pdb|3U1G|B Chain B, Trypanosoma Brucei Methionyl-Trna Synthetase In Complex
With Inhibitor Chem 1415
pdb|3U20|A Chain A, Trypanosoma Brucei Methionyl-Trna Synthetase In Complex
With Inhibitor Chem 1444
pdb|3U20|B Chain B, Trypanosoma Brucei Methionyl-Trna Synthetase In Complex
With Inhibitor Chem 1444
Length = 542
Score = 38.9 bits (89), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 34/166 (20%), Positives = 64/166 (38%), Gaps = 11/166 (6%)
Query: 104 YPSGAGLHVGHPLGYTATDILARLKRMQGYNVLHPMGWDAFGLPAEQYAIETGTHPKITT 163
Y A H+GH TD++ R R++G V G D G + A + P T
Sbjct: 18 YYVNAAPHIGHVYSTLITDVIGRYHRVKGERVFALTGTDEHGQKVAEAAKQKQVSPYDFT 77
Query: 164 LRNINRFRTQLKSLGFSYDWNREISTIEPAYYKWTQWIFLQLLKRGLAYQAEVPVNWCPA 223
F+ + + +S D+ I T + + ++ +L ++G Y + +
Sbjct: 78 TAVAGEFKKCFEQMDYSIDYF--IRTTNEQHKAVVKELWTKLEQKGDIYLGRYEGWYSIS 135
Query: 224 LGTVLANEEVVDGVSERG---------GHPVIRKPMRQWMLKITEY 260
+ L + + DGV + G GH V +M +++ +
Sbjct: 136 DESFLTPQNITDGVDKDGNPCKVSLESGHVVTWVSEENYMFRLSAF 181
Score = 30.4 bits (67), Expect = 5.0, Method: Compositional matrix adjust.
Identities = 14/41 (34%), Positives = 24/41 (58%)
Query: 709 KMSKSRGNVVNPDDVVTEYGADSLRLYEMFMGPFRDSKTWN 749
K+SKS GNV +P + E+G D+L+ + + F D ++
Sbjct: 323 KISKSLGNVFDPVEKAEEFGYDALKYFLLRESGFSDDGDYS 363
>pdb|1LI5|A Chain A, Crystal Structure Of Cysteinyl-Trna Synthetase
pdb|1LI5|B Chain B, Crystal Structure Of Cysteinyl-Trna Synthetase
pdb|1LI7|A Chain A, Crystal Structure Of Cysteinyl-Trna Synthetase With
Cysteine Substrate Bound
pdb|1LI7|B Chain B, Crystal Structure Of Cysteinyl-Trna Synthetase With
Cysteine Substrate Bound
pdb|1U0B|B Chain B, Crystal Structure Of Cysteinyl-Trna Synthetase Binary
Complex With Trnacys
Length = 461
Score = 35.8 bits (81), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 27/122 (22%), Positives = 53/122 (43%), Gaps = 3/122 (2%)
Query: 651 EMQYMVCKDVDGSY-ISADSTDTLGEYEQESIPEEKVMKSGDFFVMKDNPNIRLIARAHK 709
E M CK + + I +D + + + I + G + + + ++ R K
Sbjct: 208 ECSAMNCKQLGNHFDIHGGGSDLMFPHHENEIAQSTCAHDGQYVNYWMHSGMVMVDR-EK 266
Query: 710 MSKSRGNVVNPDDVVTEYGADSLRLYEMFMGPFRDSKTWNTSGIEGVHRFLGRMWRLIVG 769
MSKS GN DV+ Y A+++R Y + G +R ++ ++ L R++ + G
Sbjct: 267 MSKSLGNFFTVRDVLKYYDAETVR-YFLMSGHYRSQLNYSEENLKQARAALERLYTALRG 325
Query: 770 SS 771
+
Sbjct: 326 TD 327
>pdb|3C8Z|A Chain A, The 1.6 A Crystal Structure Of Mshc: The Rate Limiting
Enzyme In The Mycothiol Biosynthetic Pathway
pdb|3C8Z|B Chain B, The 1.6 A Crystal Structure Of Mshc: The Rate Limiting
Enzyme In The Mycothiol Biosynthetic Pathway
Length = 414
Score = 32.3 bits (72), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 24/71 (33%), Positives = 40/71 (56%), Gaps = 7/71 (9%)
Query: 707 AHKMSKSRGNVVNPDDVVTEYGAD--SLRLYEMFMGPFRDSKTWNTSGIEGVHRFLGRMW 764
HKMSKSRGN+V + + G D ++RL +F G +R+ + W+ ++ + L R W
Sbjct: 289 GHKMSKSRGNLVLVSQLRAQ-GVDPSAIRL-GLFSGHYREDRFWSNEVLDEANARLAR-W 345
Query: 765 RLIVGSSLPDG 775
R ++LP+
Sbjct: 346 R--SATALPEA 354
>pdb|3FNR|A Chain A, Crystal Structure Of Putative Arginyl T-Rna Synthetase
From Campylobacter Jejuni
Length = 464
Score = 32.0 bits (71), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 20/57 (35%), Positives = 29/57 (50%), Gaps = 10/57 (17%)
Query: 687 MKSGDFFVMKDNPNIRLI----------ARAHKMSKSRGNVVNPDDVVTEYGADSLR 733
MK+ F+ D+ N+ +I +KMSK GN + DVV E G+D+LR
Sbjct: 253 MKAAMEFLGFDSNNLEIILAQMVSLLKDGEPYKMSKRAGNFILMSDVVDEIGSDALR 309
>pdb|3ZX6|A Chain A, Structure Of Hamp(Af1503)-Tsr Fusion - Hamp (A291v) Mutant
pdb|3ZX6|B Chain B, Structure Of Hamp(Af1503)-Tsr Fusion - Hamp (A291v) Mutant
Length = 341
Score = 31.6 bits (70), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 17/54 (31%), Positives = 28/54 (51%)
Query: 778 KGGTVVNDEEPTLEQLCTLHKCIAKVTEEIEGTRFNTGISAMMEFINAAYKWEK 831
+GG VV++ T+ + T + IA + I+G F T I A+ + AA E+
Sbjct: 126 RGGKVVDNVVQTMRDISTSSQKIADIISVIDGIAFQTNILALNAAVEAARAGEQ 179
>pdb|3MV2|B Chain B, Crystal Structure Of A-Cop In Complex With E-Cop
pdb|3MV2|D Chain D, Crystal Structure Of A-Cop In Complex With E-Cop
pdb|3MV2|F Chain F, Crystal Structure Of A-Cop In Complex With E-Cop
Length = 310
Score = 30.8 bits (68), Expect = 3.5, Method: Composition-based stats.
Identities = 13/37 (35%), Positives = 24/37 (64%)
Query: 579 YLRFMDPKNSKELVDKTKERYWSPVDVYVGGAEHAVL 615
Y++F+D KN +EL + K++ SP ++Y+ A+L
Sbjct: 77 YVQFLDTKNIEELENLLKDKQNSPYELYLLATAQAIL 113
>pdb|3MV3|B Chain B, Crystal Structure Of A-Cop In Complex With E-Cop
pdb|3MV3|D Chain D, Crystal Structure Of A-Cop In Complex With E-Cop
pdb|3MV3|F Chain F, Crystal Structure Of A-Cop In Complex With E-Cop
Length = 310
Score = 30.8 bits (68), Expect = 3.6, Method: Composition-based stats.
Identities = 13/37 (35%), Positives = 24/37 (64%)
Query: 579 YLRFMDPKNSKELVDKTKERYWSPVDVYVGGAEHAVL 615
Y++F+D KN +EL + K++ SP ++Y+ A+L
Sbjct: 77 YVQFLDTKNIEELENLLKDKQNSPYELYLLATAQAIL 113
>pdb|1QU7|A Chain A, Four Helical-Bundle Structure Of The Cytoplasmic Domain Of
A Chemotaxis Receptor
pdb|1QU7|B Chain B, Four Helical-Bundle Structure Of The Cytoplasmic Domain Of
A Chemotaxis Receptor
Length = 227
Score = 30.8 bits (68), Expect = 4.1, Method: Composition-based stats.
Identities = 17/54 (31%), Positives = 28/54 (51%)
Query: 778 KGGTVVNDEEPTLEQLCTLHKCIAKVTEEIEGTRFNTGISAMMEFINAAYKWEK 831
+GG VV++ T+ + T + IA + I+G F T I A+ + AA E+
Sbjct: 46 RGGKVVDNVVQTMRDISTSSQKIADIISVIDGIAFQTNILALNAAVEAARAGEQ 99
>pdb|1IRX|A Chain A, Crystal Structure Of Class I Lysyl-Trna Synthetase
pdb|1IRX|B Chain B, Crystal Structure Of Class I Lysyl-Trna Synthetase
Length = 523
Score = 29.6 bits (65), Expect = 9.2, Method: Compositional matrix adjust.
Identities = 36/155 (23%), Positives = 59/155 (38%), Gaps = 29/155 (18%)
Query: 97 YVLDMFPYPSGAGLHVGHPLGYTATDILARLKRMQGYNVLHPMGWDAF------------ 144
YV++ PSG +HVG+ I+ R +GY V H WD +
Sbjct: 22 YVVESGITPSGY-VHVGNFRELFTAYIVGHALRDKGYEVRHIHMWDDYDRFRKVPRNVPQ 80
Query: 145 ------GLPAEQYAIETGTHPKITTLRNINRFRTQLKSLGFSYD--WNREI-------ST 189
G+P + G H + +F +++ LG D + E+
Sbjct: 81 EWKDYLGMPISEVPDPWGCHESYAE-HFMRKFEEEVEKLGIEVDLLYASELYKRGEYSEE 139
Query: 190 IEPAYYKWTQWIFLQLLKRGLAYQAEVPVNWCPAL 224
I A+ K + + + R +A Q +P NW PA+
Sbjct: 140 IRLAFEKRDKIMEILNKYREIAKQPPLPENWWPAM 174
>pdb|3DTT|A Chain A, Crystal Structure Of A Putative F420 Dependent
Nadp-Reductase (Arth_0613) From Arthrobacter Sp. Fb24 At
1.70 A Resolution
pdb|3DTT|B Chain B, Crystal Structure Of A Putative F420 Dependent
Nadp-Reductase (Arth_0613) From Arthrobacter Sp. Fb24 At
1.70 A Resolution
Length = 245
Score = 29.3 bits (64), Expect = 9.8, Method: Composition-based stats.
Identities = 24/83 (28%), Positives = 36/83 (43%), Gaps = 19/83 (22%)
Query: 669 STDTLGEYEQESIPEEKVMKS-----------------GDFFVMKDNPNIRLIARAHKMS 711
+TD+LGE Q + PE KV+K+ GD V + A +
Sbjct: 141 NTDSLGEQIQRTFPEAKVVKTLNTXNASLXVDPGRAAGGDHSVFVSGNDAAAKAEVATLL 200
Query: 712 KSRG--NVVNPDDVVTEYGADSL 732
KS G +V++ D+ T GA+ L
Sbjct: 201 KSLGHQDVIDLGDITTARGAEXL 223
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.318 0.135 0.416
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 30,100,217
Number of Sequences: 62578
Number of extensions: 1339217
Number of successful extensions: 3132
Number of sequences better than 100.0: 40
Number of HSP's better than 100.0 without gapping: 35
Number of HSP's successfully gapped in prelim test: 5
Number of HSP's that attempted gapping in prelim test: 2986
Number of HSP's gapped (non-prelim): 81
length of query: 952
length of database: 14,973,337
effective HSP length: 108
effective length of query: 844
effective length of database: 8,214,913
effective search space: 6933386572
effective search space used: 6933386572
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 56 (26.2 bits)