Query 002217
Match_columns 952
No_of_seqs 344 out of 2999
Neff 7.5
Searched_HMMs 46136
Date Thu Mar 28 19:10:32 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/002217.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/002217hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN02563 aminoacyl-tRNA ligase 100.0 3E-204 6E-209 1859.5 80.4 900 48-949 64-963 (963)
2 TIGR00396 leuS_bact leucyl-tRN 100.0 6E-183 1E-187 1671.3 73.0 836 64-943 1-842 (842)
3 KOG0435 Leucyl-tRNA synthetase 100.0 5E-183 1E-187 1513.1 48.9 818 68-948 34-872 (876)
4 COG0495 LeuS Leucyl-tRNA synth 100.0 3E-174 7E-179 1538.4 62.7 799 62-942 3-814 (814)
5 PRK00390 leuS leucyl-tRNA synt 100.0 2E-172 4E-177 1576.6 71.1 797 62-943 3-805 (805)
6 COG0060 IleS Isoleucyl-tRNA sy 100.0 2E-136 4E-141 1223.9 40.2 692 58-878 12-800 (933)
7 COG0525 ValS Valyl-tRNA synthe 100.0 6E-131 1E-135 1162.3 52.2 618 61-880 2-718 (877)
8 PRK06039 ileS isoleucyl-tRNA s 100.0 2E-130 3E-135 1228.5 51.3 666 60-880 7-794 (975)
9 PRK05743 ileS isoleucyl-tRNA s 100.0 1E-128 2E-133 1203.7 49.3 667 58-879 13-790 (912)
10 PRK13804 ileS isoleucyl-tRNA s 100.0 2E-126 4E-131 1185.4 49.2 679 58-879 18-828 (961)
11 PTZ00427 isoleucine-tRNA ligas 100.0 3E-126 6E-131 1187.5 50.2 673 60-877 68-948 (1205)
12 TIGR00392 ileS isoleucyl-tRNA 100.0 6E-126 1E-130 1183.1 49.5 684 60-879 2-812 (861)
13 PLN02882 aminoacyl-tRNA ligase 100.0 4E-125 8E-130 1183.3 52.5 674 61-880 5-825 (1159)
14 PTZ00419 valyl-tRNA synthetase 100.0 2E-124 3E-129 1179.8 54.1 651 59-879 23-827 (995)
15 PLN02381 valyl-tRNA synthetase 100.0 1E-123 2E-128 1164.4 52.9 641 59-880 95-897 (1066)
16 PRK14900 valS valyl-tRNA synth 100.0 2E-122 3E-127 1156.8 53.9 609 59-875 14-736 (1052)
17 PLN02943 aminoacyl-tRNA ligase 100.0 4E-122 9E-127 1145.7 55.4 629 58-874 55-785 (958)
18 PRK13208 valS valyl-tRNA synth 100.0 1E-122 2E-127 1144.6 48.4 640 59-896 5-743 (800)
19 TIGR00422 valS valyl-tRNA synt 100.0 5E-121 1E-125 1137.3 54.6 614 61-879 2-719 (861)
20 PLN02843 isoleucyl-tRNA synthe 100.0 3E-121 6E-126 1138.2 48.6 669 64-878 3-820 (974)
21 PRK05729 valS valyl-tRNA synth 100.0 5E-120 1E-124 1127.5 54.0 605 59-877 4-712 (874)
22 PLN02959 aminoacyl-tRNA ligase 100.0 4E-113 9E-118 1072.4 50.2 672 60-874 9-893 (1084)
23 TIGR00395 leuS_arch leucyl-tRN 100.0 3E-112 6E-117 1058.8 45.9 658 68-879 2-796 (938)
24 PF00133 tRNA-synt_1: tRNA syn 100.0 2E-111 4E-116 1012.0 19.5 526 72-749 1-601 (601)
25 KOG0433 Isoleucyl-tRNA synthet 100.0 3E-107 7E-112 913.5 32.4 676 62-879 28-816 (937)
26 PRK12300 leuS leucyl-tRNA synt 100.0 2E-106 4E-111 1003.0 40.6 620 110-879 1-750 (897)
27 KOG0434 Isoleucyl-tRNA synthet 100.0 6E-106 1E-110 892.8 31.3 746 60-935 4-882 (1070)
28 KOG0432 Valyl-tRNA synthetase 100.0 5E-104 1E-108 906.1 42.8 636 58-878 40-830 (995)
29 cd00817 ValRS_core catalytic c 100.0 5.2E-76 1.1E-80 670.0 25.6 361 94-748 1-382 (382)
30 PRK12267 methionyl-tRNA synthe 100.0 9.3E-73 2E-77 685.4 33.5 443 93-862 3-479 (648)
31 PRK12268 methionyl-tRNA synthe 100.0 5E-72 1.1E-76 670.4 36.4 452 94-874 3-522 (556)
32 PLN02224 methionine-tRNA ligas 100.0 5.2E-70 1.1E-74 645.0 34.9 444 91-862 66-547 (616)
33 TIGR00398 metG methionyl-tRNA 100.0 9.5E-70 2.1E-74 647.2 33.3 438 96-862 1-504 (530)
34 PRK11893 methionyl-tRNA synthe 100.0 9.1E-69 2E-73 637.7 37.0 441 94-862 1-477 (511)
35 PRK00133 metG methionyl-tRNA s 100.0 8E-69 1.7E-73 651.5 34.2 441 94-862 2-504 (673)
36 PLN02610 probable methionyl-tR 100.0 9E-68 2E-72 643.2 35.5 445 91-862 14-533 (801)
37 COG0143 MetG Methionyl-tRNA sy 100.0 6.4E-67 1.4E-71 604.8 33.6 445 92-866 3-517 (558)
38 KOG0437 Leucyl-tRNA synthetase 100.0 2.2E-67 4.9E-72 589.8 25.0 666 65-876 13-885 (1080)
39 cd00818 IleRS_core catalytic c 100.0 4.8E-66 1E-70 578.9 24.9 318 94-748 1-338 (338)
40 cd00812 LeuRS_core catalytic c 100.0 2.5E-58 5.5E-63 512.2 23.2 304 95-749 1-313 (314)
41 KOG0436 Methionyl-tRNA synthet 100.0 8.1E-57 1.8E-61 479.6 31.1 449 93-862 38-528 (578)
42 cd00668 Ile_Leu_Val_MetRS_core 100.0 1.1E-57 2.4E-62 508.1 23.5 145 95-269 1-158 (312)
43 cd00814 MetRS_core catalytic c 100.0 1E-55 2.2E-60 493.1 23.8 169 95-282 1-172 (319)
44 PF09334 tRNA-synt_1g: tRNA sy 100.0 2.5E-55 5.4E-60 499.3 15.3 341 96-758 1-376 (391)
45 PRK00260 cysS cysteinyl-tRNA s 100.0 3.3E-41 7.2E-46 392.5 22.0 128 90-224 20-148 (463)
46 TIGR00435 cysS cysteinyl-tRNA 100.0 6.7E-38 1.4E-42 363.8 21.7 130 90-225 18-148 (465)
47 PTZ00399 cysteinyl-tRNA-synthe 100.0 8.6E-37 1.9E-41 364.8 24.3 121 90-216 57-179 (651)
48 PF13603 tRNA-synt_1_2: Leucyl 100.0 3.8E-37 8.2E-42 310.8 15.3 183 282-477 1-185 (185)
49 PRK12418 cysteinyl-tRNA synthe 100.0 4.3E-36 9.3E-41 336.1 22.0 126 91-223 6-137 (384)
50 TIGR03447 mycothiol_MshC cyste 100.0 7.5E-36 1.6E-40 335.3 22.0 125 92-223 35-164 (411)
51 KOG1247 Methionyl-tRNA synthet 100.0 5.6E-36 1.2E-40 319.8 19.3 444 92-865 12-524 (567)
52 PRK14535 cysS cysteinyl-tRNA s 100.0 2.2E-35 4.9E-40 342.8 21.8 128 91-224 246-374 (699)
53 PLN02946 cysteine-tRNA ligase 100.0 1.3E-35 2.8E-40 344.4 18.9 128 90-223 77-204 (557)
54 PRK14536 cysS cysteinyl-tRNA s 100.0 2.2E-34 4.8E-39 331.2 23.9 128 90-223 20-157 (490)
55 PRK14534 cysS cysteinyl-tRNA s 100.0 1.2E-31 2.6E-36 306.9 23.0 126 93-224 21-156 (481)
56 COG0215 CysS Cysteinyl-tRNA sy 100.0 4.4E-30 9.5E-35 287.4 17.8 126 91-223 20-147 (464)
57 cd00672 CysRS_core catalytic c 100.0 1.3E-29 2.9E-34 264.7 14.3 94 91-189 18-112 (213)
58 PF01406 tRNA-synt_1e: tRNA sy 99.9 6.1E-29 1.3E-33 266.0 2.3 128 90-223 5-133 (300)
59 PRK01611 argS arginyl-tRNA syn 99.9 3E-24 6.4E-29 254.0 26.2 120 92-214 109-229 (507)
60 cd00674 LysRS_core_class_I cat 99.9 5.5E-25 1.2E-29 244.6 18.2 116 93-213 18-151 (353)
61 KOG2007 Cysteinyl-tRNA synthet 99.9 1.7E-24 3.6E-29 238.1 20.4 128 90-223 52-185 (586)
62 PRK00750 lysK lysyl-tRNA synth 99.9 2.3E-22 5E-27 236.1 17.1 116 93-212 22-156 (510)
63 TIGR00467 lysS_arch lysyl-tRNA 99.7 1.6E-17 3.4E-22 193.8 14.2 86 94-182 18-121 (515)
64 TIGR00456 argS arginyl-tRNA sy 99.7 1.3E-14 2.8E-19 174.1 27.3 121 707-830 370-523 (566)
65 cd00671 ArgRS_core catalytic c 99.7 3.6E-16 7.9E-21 164.6 11.3 119 101-225 7-125 (212)
66 cd07961 Anticodon_Ia_Ile_ABEc 99.6 4.1E-15 8.9E-20 153.2 11.3 130 748-877 1-163 (183)
67 cd07960 Anticodon_Ia_Ile_BEm A 99.4 5.2E-13 1.1E-17 137.2 12.3 128 749-879 2-162 (180)
68 COG0018 ArgS Arginyl-tRNA synt 99.4 6.7E-11 1.4E-15 140.0 29.0 140 68-213 92-286 (577)
69 cd07959 Anticodon_Ia_Leu_AEc A 99.4 9.9E-13 2.1E-17 125.0 9.9 107 748-859 1-117 (117)
70 PRK12451 arginyl-tRNA syntheta 99.4 6.3E-11 1.4E-15 141.9 26.5 118 707-831 369-522 (562)
71 cd07958 Anticodon_Ia_Leu_BEm A 99.4 1.9E-12 4.1E-17 122.8 10.6 110 748-859 1-117 (117)
72 PF08264 Anticodon_1: Anticodo 99.3 3.4E-13 7.4E-18 134.6 2.3 89 789-878 1-115 (153)
73 cd00802 class_I_aaRS_core cata 99.3 5.2E-12 1.1E-16 124.8 7.9 75 100-175 3-77 (143)
74 PLN02286 arginine-tRNA ligase 99.1 2.1E-08 4.5E-13 120.5 27.8 120 707-830 376-536 (576)
75 cd07962 Anticodon_Ia_Val Antic 99.1 6.5E-10 1.4E-14 108.7 10.9 112 748-859 1-135 (135)
76 cd07957 Anticodon_Ia_Met Antic 99.1 1.4E-09 2.9E-14 105.1 12.5 105 751-859 4-129 (129)
77 PF01921 tRNA-synt_1f: tRNA sy 98.8 8.9E-09 1.9E-13 114.1 6.6 89 92-182 21-127 (360)
78 COG1384 LysS Lysyl-tRNA synthe 98.5 3.6E-06 7.8E-11 96.1 17.5 86 96-182 20-124 (521)
79 PF00750 tRNA-synt_1d: tRNA sy 98.2 3E-06 6.5E-11 96.4 9.4 121 92-215 18-194 (354)
80 cd07375 Anticodon_Ia_like Anti 98.2 5E-06 1.1E-10 78.3 8.9 98 751-848 2-117 (117)
81 cd09287 GluRS_non_core catalyt 98.2 2.8E-06 6.2E-11 90.1 6.8 92 101-213 6-97 (240)
82 PRK04156 gltX glutamyl-tRNA sy 98.0 2.7E-05 5.9E-10 92.2 10.0 146 46-213 43-197 (567)
83 TIGR00463 gltX_arch glutamyl-t 97.7 0.00026 5.6E-09 83.9 11.6 95 97-214 94-188 (560)
84 cd00807 GlnRS_core catalytic c 97.2 0.00086 1.9E-08 71.2 7.8 89 102-213 7-95 (238)
85 PTZ00402 glutamyl-tRNA synthet 97.2 0.00077 1.7E-08 80.0 7.7 93 97-212 53-146 (601)
86 TIGR03838 queuosine_YadB gluta 97.2 0.00095 2.1E-08 72.7 7.6 90 102-214 6-96 (272)
87 PF00749 tRNA-synt_1c: tRNA sy 97.1 0.00078 1.7E-08 75.3 7.0 91 102-214 7-97 (314)
88 PRK12558 glutamyl-tRNA synthet 97.1 0.00092 2E-08 77.5 7.6 90 102-214 8-97 (445)
89 PLN03233 putative glutamate-tR 97.1 0.00097 2.1E-08 78.3 7.5 95 97-214 12-106 (523)
90 PTZ00437 glutaminyl-tRNA synth 97.1 0.0012 2.5E-08 77.9 8.1 94 98-214 53-146 (574)
91 TIGR00440 glnS glutaminyl-tRNA 97.1 0.0012 2.6E-08 77.6 8.0 91 102-214 6-96 (522)
92 PRK05347 glutaminyl-tRNA synth 97.0 0.0016 3.4E-08 76.9 7.7 96 97-214 30-125 (554)
93 PLN02907 glutamate-tRNA ligase 96.9 0.0022 4.8E-08 78.9 9.0 94 97-213 214-307 (722)
94 COG0008 GlnS Glutamyl- and glu 96.8 0.0024 5.2E-08 74.6 7.8 95 97-214 10-105 (472)
95 PRK05710 glutamyl-Q tRNA(Asp) 96.7 0.0032 6.9E-08 69.4 7.3 93 98-213 7-100 (299)
96 PRK14703 glutaminyl-tRNA synth 96.6 0.0043 9.4E-08 76.4 8.2 94 97-213 32-126 (771)
97 cd00808 GluRS_core catalytic c 96.6 0.0051 1.1E-07 65.8 7.4 85 102-209 7-100 (239)
98 cd00418 GlxRS_core catalytic c 96.6 0.0048 1E-07 65.5 6.9 85 102-209 7-92 (230)
99 PLN02627 glutamyl-tRNA synthet 96.5 0.005 1.1E-07 72.6 7.6 91 100-213 49-148 (535)
100 PRK12410 glutamylglutaminyl-tR 96.4 0.0062 1.3E-07 70.5 7.5 90 102-214 5-94 (433)
101 PRK14895 gltX glutamyl-tRNA sy 96.4 0.0066 1.4E-07 71.4 7.7 92 100-214 8-100 (513)
102 TIGR00464 gltX_bact glutamyl-t 96.4 0.0064 1.4E-07 71.8 7.5 90 102-214 7-97 (470)
103 PLN02859 glutamine-tRNA ligase 96.4 0.0077 1.7E-07 73.6 8.1 95 97-214 265-359 (788)
104 KOG1147 Glutamyl-tRNA syntheta 96.1 0.018 4E-07 66.0 8.3 98 97-217 201-298 (712)
105 PRK01406 gltX glutamyl-tRNA sy 96.0 0.013 2.9E-07 69.1 7.3 90 101-213 9-106 (476)
106 PF00750 tRNA-synt_1d: tRNA sy 95.2 0.0084 1.8E-07 68.4 1.8 27 707-733 285-312 (354)
107 PRK06039 ileS isoleucyl-tRNA s 94.8 0.031 6.6E-07 72.1 5.2 79 194-286 361-441 (975)
108 COG0060 IleS Isoleucyl-tRNA sy 94.3 0.051 1.1E-06 68.0 5.3 77 196-286 375-452 (933)
109 PLN02882 aminoacyl-tRNA ligase 94.2 0.044 9.5E-07 71.5 4.9 78 195-286 383-462 (1159)
110 TIGR00392 ileS isoleucyl-tRNA 93.9 0.072 1.6E-06 68.1 5.9 77 196-286 381-458 (861)
111 KOG4426 Arginyl-tRNA synthetas 93.7 0.38 8.3E-06 54.2 10.1 128 96-229 189-370 (656)
112 PTZ00427 isoleucine-tRNA ligas 93.6 0.088 1.9E-06 68.7 5.9 77 196-286 488-566 (1205)
113 TIGR00422 valS valyl-tRNA synt 93.5 0.086 1.9E-06 67.4 5.6 78 195-286 314-394 (861)
114 cd00395 Tyr_Trp_RS_core cataly 93.5 0.077 1.7E-06 58.3 4.3 68 105-179 8-79 (273)
115 PRK14900 valS valyl-tRNA synth 93.4 0.094 2E-06 68.0 5.7 79 194-286 330-411 (1052)
116 PRK13208 valS valyl-tRNA synth 93.4 0.11 2.4E-06 65.9 6.2 78 195-286 314-392 (800)
117 KOG1148 Glutaminyl-tRNA synthe 92.8 0.28 6.1E-06 57.3 7.6 94 97-213 249-342 (764)
118 PRK05743 ileS isoleucyl-tRNA s 92.7 0.14 3E-06 65.7 5.7 79 194-286 368-449 (912)
119 cd00805 TyrRS_core catalytic c 92.6 0.13 2.9E-06 56.3 4.6 71 104-180 8-81 (269)
120 PRK05729 valS valyl-tRNA synth 92.5 0.16 3.6E-06 64.9 5.9 77 196-286 317-396 (874)
121 PRK12556 tryptophanyl-tRNA syn 91.2 0.31 6.7E-06 55.0 5.6 66 105-182 12-77 (332)
122 PRK13804 ileS isoleucyl-tRNA s 90.6 0.28 6.1E-06 63.2 5.1 78 195-286 400-485 (961)
123 PLN02843 isoleucyl-tRNA synthe 90.5 0.33 7.1E-06 62.6 5.6 76 197-286 388-464 (974)
124 PTZ00419 valyl-tRNA synthetase 90.5 0.32 7E-06 63.1 5.5 78 195-286 360-440 (995)
125 cd00802 class_I_aaRS_core cata 90.0 0.2 4.4E-06 49.3 2.5 12 603-614 94-105 (143)
126 PLN02943 aminoacyl-tRNA ligase 89.6 0.49 1.1E-05 61.0 6.1 77 196-286 367-446 (958)
127 PRK13354 tyrosyl-tRNA syntheta 89.4 0.23 4.9E-06 57.7 2.6 79 94-179 32-112 (410)
128 PF00133 tRNA-synt_1: tRNA syn 89.3 0.23 5.1E-06 60.8 2.8 79 194-286 333-412 (601)
129 PF00579 tRNA-synt_1b: tRNA sy 88.8 0.34 7.3E-06 53.8 3.4 77 94-182 4-82 (292)
130 PRK05912 tyrosyl-tRNA syntheta 88.5 0.28 6.1E-06 57.0 2.6 78 95-179 33-112 (408)
131 PLN02381 valyl-tRNA synthetase 88.5 0.55 1.2E-05 61.1 5.5 79 194-286 426-510 (1066)
132 TIGR00395 leuS_arch leucyl-tRN 88.4 2.1 4.4E-05 55.4 10.5 161 107-286 301-482 (938)
133 KOG1195 Arginyl-tRNA synthetas 87.2 5.7 0.00012 46.3 11.7 141 68-214 86-278 (567)
134 cd00418 GlxRS_core catalytic c 85.8 1.7 3.7E-05 46.4 6.4 34 707-741 151-185 (230)
135 PRK12285 tryptophanyl-tRNA syn 84.5 4.1 8.8E-05 46.7 9.1 76 93-182 64-139 (368)
136 PRK12300 leuS leucyl-tRNA synt 84.4 1.6 3.4E-05 56.2 6.4 78 194-286 354-435 (897)
137 PRK12284 tryptophanyl-tRNA syn 84.3 1.4 3.1E-05 51.0 5.3 24 601-625 147-170 (431)
138 PLN02486 aminoacyl-tRNA ligase 83.9 5.4 0.00012 45.9 9.8 79 92-182 70-148 (383)
139 COG0495 LeuS Leucyl-tRNA synth 82.7 0.061 1.3E-06 66.6 -6.9 99 309-418 208-312 (814)
140 PRK04156 gltX glutamyl-tRNA sy 81.4 1.3 2.8E-05 53.3 3.6 54 706-759 335-404 (567)
141 TIGR00233 trpS tryptophanyl-tR 81.3 1.7 3.7E-05 49.1 4.5 24 601-625 138-161 (328)
142 PRK08560 tyrosyl-tRNA syntheta 79.8 1.3 2.9E-05 50.0 3.0 71 95-179 30-100 (329)
143 PTZ00126 tyrosyl-tRNA syntheta 76.6 2 4.4E-05 49.4 3.3 23 601-624 209-231 (383)
144 PRK00927 tryptophanyl-tRNA syn 76.6 2.7 5.9E-05 47.6 4.2 63 104-180 9-71 (333)
145 cd00808 GluRS_core catalytic c 75.8 3 6.5E-05 44.8 4.1 35 706-741 159-194 (239)
146 PLN02959 aminoacyl-tRNA ligase 75.6 3.6 7.7E-05 54.0 5.4 77 194-286 493-572 (1084)
147 PRK12282 tryptophanyl-tRNA syn 75.0 2.9 6.3E-05 47.3 3.9 23 601-624 141-163 (333)
148 cd00806 TrpRS_core catalytic c 74.1 2.8 6.2E-05 46.2 3.5 65 104-180 7-71 (280)
149 COG0525 ValS Valyl-tRNA synthe 73.2 5.5 0.00012 50.0 5.9 77 196-286 315-394 (877)
150 cd00806 TrpRS_core catalytic c 72.8 7.2 0.00016 43.1 6.2 15 708-722 190-205 (280)
151 TIGR00234 tyrS tyrosyl-tRNA sy 72.4 3.5 7.6E-05 47.5 3.8 40 96-140 31-70 (377)
152 cd07956 Anticodon_Ia_Arg Antic 71.9 23 0.0005 35.2 9.2 102 726-830 2-114 (156)
153 cd00395 Tyr_Trp_RS_core cataly 71.5 6.5 0.00014 43.2 5.5 14 706-719 195-208 (273)
154 PF01927 Mut7-C: Mut7-C RNAse 71.2 5.4 0.00012 39.6 4.3 31 124-156 12-42 (147)
155 COG0162 TyrS Tyrosyl-tRNA synt 70.5 2.2 4.7E-05 49.2 1.5 12 601-612 179-190 (401)
156 COG0180 TrpS Tryptophanyl-tRNA 70.2 18 0.0004 40.3 8.6 90 95-197 5-96 (314)
157 KOG0434 Isoleucyl-tRNA synthet 70.1 4.8 0.0001 48.3 4.2 84 201-286 333-451 (1070)
158 PRK12285 tryptophanyl-tRNA syn 70.0 5.9 0.00013 45.4 4.9 25 601-626 202-226 (368)
159 COG1656 Uncharacterized conser 69.4 6.2 0.00013 39.5 4.2 94 124-234 18-116 (165)
160 PRK13354 tyrosyl-tRNA syntheta 68.2 8.5 0.00018 44.9 5.8 30 706-737 227-256 (410)
161 PRK12283 tryptophanyl-tRNA syn 68.2 6.3 0.00014 45.4 4.6 23 601-624 141-163 (398)
162 TIGR00464 gltX_bact glutamyl-t 66.6 9.4 0.0002 45.4 5.8 34 706-740 238-272 (470)
163 PLN02886 aminoacyl-tRNA ligase 61.5 19 0.00042 41.4 6.9 91 98-204 49-140 (389)
164 cd00805 TyrRS_core catalytic c 60.2 7 0.00015 42.9 3.0 14 706-719 192-205 (269)
165 PRK08560 tyrosyl-tRNA syntheta 60.0 22 0.00048 40.2 7.0 22 601-623 167-188 (329)
166 PRK05912 tyrosyl-tRNA syntheta 57.6 23 0.00049 41.4 6.7 31 706-738 229-259 (408)
167 COG0180 TrpS Tryptophanyl-tRNA 54.7 15 0.00032 41.1 4.3 25 601-626 144-168 (314)
168 PRK00927 tryptophanyl-tRNA syn 53.9 17 0.00037 41.2 4.8 23 601-624 137-159 (333)
169 PTZ00348 tyrosyl-tRNA syntheta 51.6 12 0.00025 46.3 3.2 23 601-624 174-196 (682)
170 TIGR00233 trpS tryptophanyl-tR 51.0 33 0.00072 38.8 6.5 74 96-182 3-76 (328)
171 COG0162 TyrS Tyrosyl-tRNA synt 44.7 23 0.00049 41.1 4.0 75 93-176 32-109 (401)
172 COG3171 Uncharacterized protei 41.8 45 0.00097 31.2 4.6 49 172-220 24-73 (119)
173 COG5270 PUA domain (predicted 41.5 15 0.00033 37.2 1.7 40 206-250 2-41 (202)
174 cd00671 ArgRS_core catalytic c 41.2 22 0.00048 37.5 3.0 15 468-482 97-111 (212)
175 PLN03233 putative glutamate-tR 41.2 28 0.0006 41.7 4.1 55 705-759 242-312 (523)
176 KOG2145 Cytoplasmic tryptophan 40.9 21 0.00046 38.7 2.7 30 91-121 81-110 (397)
177 PRK12284 tryptophanyl-tRNA syn 40.7 73 0.0016 37.3 7.2 102 98-213 5-107 (431)
178 KOG1149 Glutamyl-tRNA syntheta 39.9 52 0.0011 38.0 5.6 92 102-214 39-137 (524)
179 cd00807 GlnRS_core catalytic c 38.0 40 0.00088 36.2 4.3 54 705-758 160-229 (238)
180 PRK01406 gltX glutamyl-tRNA sy 36.4 34 0.00074 40.8 3.9 34 706-740 248-282 (476)
181 PTZ00126 tyrosyl-tRNA syntheta 35.7 56 0.0012 37.8 5.3 77 95-182 66-142 (383)
182 PRK12410 glutamylglutaminyl-tR 35.7 70 0.0015 37.6 6.2 35 706-741 232-267 (433)
183 TIGR00440 glnS glutaminyl-tRNA 35.4 34 0.00074 41.0 3.6 53 705-757 237-305 (522)
184 PRK05347 glutaminyl-tRNA synth 33.6 41 0.00089 40.6 3.9 55 705-759 266-336 (554)
185 PRK12556 tryptophanyl-tRNA syn 32.7 77 0.0017 35.9 5.7 23 601-624 148-170 (332)
186 PRK14895 gltX glutamyl-tRNA sy 32.1 48 0.001 39.7 4.1 34 706-740 237-271 (513)
187 TIGR00234 tyrS tyrosyl-tRNA sy 31.3 61 0.0013 37.5 4.7 15 707-721 219-233 (377)
188 PF09190 DALR_2: DALR domain; 31.0 63 0.0014 26.9 3.6 27 802-828 1-28 (63)
189 PRK12558 glutamyl-tRNA synthet 28.2 83 0.0018 37.1 5.1 34 706-740 237-271 (445)
190 PRK12283 tryptophanyl-tRNA syn 27.9 91 0.002 36.1 5.3 90 98-203 5-96 (398)
191 PTZ00437 glutaminyl-tRNA synth 27.3 45 0.00097 40.3 2.8 56 703-758 280-351 (574)
192 PLN02627 glutamyl-tRNA synthet 25.4 1E+02 0.0022 37.2 5.2 33 707-740 291-324 (535)
193 TIGR00373 conserved hypothetic 24.4 53 0.0012 33.0 2.3 96 146-246 29-139 (158)
194 cd09287 GluRS_non_core catalyt 24.2 75 0.0016 34.3 3.5 53 706-758 163-231 (240)
195 PRK00448 polC DNA polymerase I 23.0 80 0.0017 42.7 4.2 27 552-586 933-959 (1437)
196 cd06545 GH18_3CO4_chitinase Th 22.4 2.2E+02 0.0047 30.8 6.8 99 103-211 33-134 (253)
197 PLN02859 glutamine-tRNA ligase 22.0 61 0.0013 40.7 2.6 51 705-755 495-562 (788)
198 PF00579 tRNA-synt_1b: tRNA sy 21.8 1.5E+02 0.0033 32.8 5.5 24 601-625 148-171 (292)
199 PLN02486 aminoacyl-tRNA ligase 21.6 38 0.00081 39.2 0.7 25 708-737 264-289 (383)
200 smart00531 TFIIE Transcription 20.1 70 0.0015 31.7 2.2 65 183-247 60-135 (147)
No 1
>PLN02563 aminoacyl-tRNA ligase
Probab=100.00 E-value=2.8e-204 Score=1859.55 Aligned_cols=900 Identities=82% Similarity=1.361 Sum_probs=826.0
Q ss_pred hhhHHHHHhhcccccCCChhhhhHHHHHHHHHcCCCCCCCCCCCCCCcEEEEcCCCCCCCCCCCCchhHHHHHHHHHHHH
Q 002217 48 NEIEEQKQKQQVVKRAYPFHEIEPKWQSYWENNRTFRTPDEIDTSKPKFYVLDMFPYPSGAGLHVGHPLGYTATDILARL 127 (952)
Q Consensus 48 ~~~~~~~~~~~~~~~~y~~~~iE~k~~~~W~~~~~f~~~~~~~~~k~kf~i~~~~Pypng~~lHiGH~~~~~~~Di~~Ry 127 (952)
...++..++++.+++.|||.+||++||++|+++++|+...+.+.++++||+++|||||||.+|||||+++|+++|+++||
T Consensus 64 ~~~~~~~~~~~~~~~~y~~~~iE~kwq~~W~e~~~f~~~~~~~~~k~k~~v~~~~PYpnG~~lHiGH~~~y~~~DviaRy 143 (963)
T PLN02563 64 ALTSTTAKTTPAAKRAYPFHEIEPKWQRYWEENRTFRTPDDVDTSKPKFYVLDMFPYPSGAGLHVGHPEGYTATDILARY 143 (963)
T ss_pred chhhhhhhcccccCCCCCHHHHHHHHHHHHHhCCCccccccccCCCCCEEEEeCCCCCCCcccchhhHHHHHHHHHHHHH
Confidence 33444455555789999999999999999999999997643456889999999999999944999999999999999999
Q ss_pred HHHcCCcccccccccccChHHHHHHHHhCCCchHHHHHHHHHHHHHHHHcCCccccCCcccCCChhHHHHHHHHHHHHHH
Q 002217 128 KRMQGYNVLHPMGWDAFGLPAEQYAIETGTHPKITTLRNINRFRTQLKSLGFSYDWNREISTIEPAYYKWTQWIFLQLLK 207 (952)
Q Consensus 128 ~r~~G~~V~~~~G~D~~Glpie~~a~~~g~~~~~~~~~~~~~~~~~l~~lgi~~Dw~~~~~T~~~~~~~~v~~~f~~L~~ 207 (952)
+||+||+|+|++||||||+|||++|++.|.+|++++.++++.|++||++||+++||++++.|+||+|++++||+|.+|++
T Consensus 144 ~Rm~G~~Vl~~~G~D~~GlPiE~~a~~~g~~p~~~~~~~i~~~~~q~~~lG~s~DW~r~~~T~dp~y~~~~q~~F~~L~~ 223 (963)
T PLN02563 144 KRMQGYNVLHPMGWDAFGLPAEQYAIETGTHPKITTLKNIARFRSQLKSLGFSYDWDREISTTEPEYYKWTQWIFLQLLK 223 (963)
T ss_pred HHhcCCeecccccccccCcHHHHHHHHcCCChHHhHHHHHHHHHHHHHHhCcEeeCCCCeecCCHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCceeeeccccccCCCCCcccCchhhccCccccCCCCeEEeeccccchhhhhhhhHhhccCCCCCCchHHHHHHHhhhcc
Q 002217 208 RGLAYQAEVPVNWCPALGTVLANEEVVDGVSERGGHPVIRKPMRQWMLKITEYADRLLDDLDDLDWPESVKEMQRNWIGR 287 (952)
Q Consensus 208 kGliy~~~~~v~wc~~~~t~ls~~Ev~~~~~~~~~~~~~~~~~~~~~~~i~~y~~~l~~~l~~~~~p~~~~~~~~~~i~~ 287 (952)
+||||++.++|+|||.|+|+||++||++++|++||.++++++++||||+|++|+++|+++|+.++||++++.||+|||||
T Consensus 224 ~GliY~~~~~v~wcp~~~T~La~~Ev~~~~~~~~~~~~~~~~~~q~f~~it~ya~~L~~~l~~~~wp~~v~~~q~nwiG~ 303 (963)
T PLN02563 224 RGLAYQAEVPVNWCPALGTVLANEEVVDGLSERGGHPVIRKPMRQWMLKITAYADRLLEDLDDLDWPESIKEMQRNWIGR 303 (963)
T ss_pred CCCEEeeeeeeeecCCcCCCCCHHHhhcCCCcCCCCceEEEecceeEEecchhHHHHHHhhhhcCCCHHHHHHHHHhccc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCceEEEEEecCCCCccCcEEEEecCCcchhccccEEEECCCCccchhhccccchHHHHHHHHHHhccchhhHhhhhhc
Q 002217 288 SEGAEMDFRVLDSDGQERDIKITVYTTRPDTIFGATYLVVAPEHPLLSSLVSTTQSQNIEEYKNLASRKSDLERTELQKE 367 (952)
Q Consensus 288 s~~~~v~f~~~~~~~~~~~~~i~i~TT~P~Tl~g~~~v~v~p~~~y~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~ 367 (952)
|+|++|+|++.+.++...+.+|+|||||||||||++||+|||+|+|+..++..++...+++|+..+.+.+++++....++
T Consensus 304 s~g~~i~F~~~~~~~~~~~~~l~V~TTrPeTl~g~t~iav~p~~~yv~~~~~~~~~~~v~~y~~~~~~~~~~~~~~~~~~ 383 (963)
T PLN02563 304 SEGAELDFSVLDGEGKERDEKITVYTTRPDTLFGATYLVVAPEHPLLSSLTTAEQKEAVEEYVDAASRKSDLERTELQKE 383 (963)
T ss_pred cceEEEEEEecCccccCCCCEEEEEeCCChHHhhccEEEECCCChhhHhhhcccchHHHHHHHHHHhchhHHhhhhccce
Confidence 99999999986432211246899999999999999999999999999877666666677889988777777776555577
Q ss_pred ccccccceEEecCCCCCcccEEecCcccCCCCCCceEecCCCChhhHHHHHHcCCceeeeecCCCCCCccccccccccce
Q 002217 368 KTGVFSGCYARNPASGEAIPIWVADYVLGSYGTGAIMAVPAHDTRDHEFALKFDISIHSVVMPDDESSSQSEKAYTGEGL 447 (952)
Q Consensus 368 ~~~~l~g~~~~~P~~~~~~pv~~~~~V~~~~GTG~V~~~Pah~~~D~~~~~~~~L~i~~vv~~~~~~~~~~~~~y~~~g~ 447 (952)
++|.|+|.++.||++|+.+|||.++||++++|||+||+|||||++||+||++||||++++|++.|+......+.|.++|+
T Consensus 384 k~g~~~g~~~~~P~~~~~iPI~~ad~V~~~~GTGaVm~~PaHd~~D~~~a~k~~Lpi~~vI~~~d~~~~~~~~~y~~~G~ 463 (963)
T PLN02563 384 KTGVFTGSYAINPATGEAIPIWVADYVLGSYGTGAIMAVPAHDTRDFEFAQKFDLPIKWVVKPADGNEDDAEKAYTGEGV 463 (963)
T ss_pred ecccccCcEEeccCCCCeeEEEEecccCCCCCCCeEEEcCCCCHHHHHHHHHcCCCceeeeccCccccccccccccCcee
Confidence 89999999999999999999999999999999999999999999999999999999999997642222223468999999
Q ss_pred EEcccCcccccccCCCCHHHHHHHHHHHHHHcCCCcceecccCCceeecccCCCCcccCceEeCCCCceeecCCCCcCCC
Q 002217 448 IVNSSNLISGLDINGLSCQEATSKVIEWAEKTGNGKKKVNYKLRDWLFARQRYWGEPIPVVFLDGTGETVPLHEAELPLT 527 (952)
Q Consensus 448 l~~~~~~~~~~~~~gl~~~~a~~~ii~~l~~~~~~~~~~~~~l~DW~ISRQR~WG~PIPv~~~~~~~~~~~~~~~~l~v~ 527 (952)
|+|+.. .+++++||..++|+++|+++|++.|.++++++|++||||||||||||+|||+|||++||+++++++++||+.
T Consensus 464 l~ns~~--~~~~~~Gl~~~eA~~~Ii~~L~~~g~~~~~v~y~lrDW~ISRQRyWG~PIPi~~c~~cg~~v~v~e~~Lpv~ 541 (963)
T PLN02563 464 IVNSSS--SGLDINGLSSKEAAKKVIEWLEETGNGKKKVNYKLRDWLFARQRYWGEPIPVVFLEDSGEPVPVPESDLPLT 541 (963)
T ss_pred EecCCC--cccccCCcCHHHHHHHHHHHHHhCCCCCCeeEecCCCceEeeecccCCceEEEEEcCCCcEEecchHhCccc
Confidence 999753 124599999999999999999999999999999999999999999999999999999998999999999999
Q ss_pred CCcccccCCCCCCCCCCccccccccccccCCCCCccccCCCccccccccchhheecCCCCchhHhhhhhhhcCCCceeEe
Q 002217 528 LPELDDFTPTGTGEPPLSKAVSWVQTTEHSSGKPARRETSTMPQWAGSCWYYLRFMDPKNSKELVDKTKERYWSPVDVYV 607 (952)
Q Consensus 528 lp~~~~~~~~G~~~~~l~~~~~w~~~~~~~~g~~~~re~d~lD~WfdSswy~~~~~~p~~~~~~~~~~~~~~w~PvDlyv 607 (952)
||+++++.+.|.|.+||.++.+|+++.||+||++++||||||||||||||||+||++|++++++|+++..++|||||+|+
T Consensus 542 lpe~~~~~~~~~g~~pl~~~~~~~~~~~p~cg~~~~RetDtmDtw~~Sswy~~r~~~p~~~~~~~~~~~~~~w~PvD~yi 621 (963)
T PLN02563 542 LPELDDFTPTGTGEPPLAKAVSWVNTVDPSSGKPARRETNTMPQWAGSCWYYLRFMDPKNSNALVDKEKEKYWMPVDLYV 621 (963)
T ss_pred chhhhhcccCCCCCCchhcchhhhcCcCcCCCCCcEECCCcCCchhhccHHHHHHhCCCccccccCHHHHhCcCCCcEee
Confidence 99998898889999999999999999999999999999999999999999999999999999999988888999999999
Q ss_pred cCchhhHHHHHHHHHHHHHHHHhcCcCCCCcchhhhhhceeccccceeEEecCCCccccCCCCCcccccccccCcccccc
Q 002217 608 GGAEHAVLHLLYARFWHKVLYDIGVVSTKEPFKCVINQGIILGEMQYMVCKDVDGSYISADSTDTLGEYEQESIPEEKVM 687 (952)
Q Consensus 608 ~G~D~~~~HLly~Rfw~~~L~~~~~~~~~~PFk~l~~~G~vl~~~~y~~~~d~~g~~~~~~~~~~~~~~~~~~~~~~~v~ 687 (952)
||+||+++||||+||||++|+++|++.+++||++|++||||+++++|.+|+|++|+|++.+.++..+......+|.+.|.
T Consensus 622 gG~dhailHLlY~Rfw~~~l~~~g~~~~~ePfk~ll~qGmVl~~~~~~~~~d~~G~~~~~~~~~~~~~~~~~~~~~~~~~ 701 (963)
T PLN02563 622 GGAEHAVLHLLYARFWHKVLYDIGVVSTKEPFQCLVNQGMILGEVEYTAFKDSDGEYVSADTADRLGELQQEKIPEEKVI 701 (963)
T ss_pred ccHHHHhhHhHHHHHHHHHHHHhhccCCcccHHHHhccceeecCccccceecCCCcCccccccccccccccccccccccc
Confidence 99999999999999999999999999999999999999999999999999999999999777777777778889999999
Q ss_pred ccCCceeeccCcchhhcccccccccCCCCCCChhhHHhhhCchhhhhhhhhcCCCCCCCCCChhhHHHHHHHHHHHHHHH
Q 002217 688 KSGDFFVMKDNPNIRLIARAHKMSKSRGNVVNPDDVVTEYGADSLRLYEMFMGPFRDSKTWNTSGIEGVHRFLGRMWRLI 767 (952)
Q Consensus 688 ~~~~~~vl~~~~~~~v~~~g~KMSKSkGNvV~P~eii~~YGaDalRl~ll~~~~~~~~~~~s~~~i~~~~r~l~~l~~~~ 767 (952)
.+++.+++.++..+.|.++++||||||||||+|.++|++||||+||||+|+++|..++..|+++++++++|||+|+|+++
T Consensus 702 ~~~~~~~~~~~~~~~~~~~~eKMSKSKGNvVdP~eiI~kYGADaLRl~ll~~ap~~dd~~w~~~~V~g~~rfL~rlwn~~ 781 (963)
T PLN02563 702 KSGDSFVLKDDPSIRLIARAHKMSKSRGNVVNPDDVVSEYGADSLRLYEMFMGPLRDSKTWSTSGVEGVHRFLGRTWRLV 781 (963)
T ss_pred ccccccccccCCcccccccccccccccCCcCCHHHHHHHcCcHHHHHHHHhCCCcccccccCHHHHHHHHHHHHHHHHHH
Confidence 99988998776777788899999999999999999999999999999999999999999999999999999999999998
Q ss_pred hccCCCCCCCCCCccCCCCCChHHHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHhcccchhHHHHHHHHHHhCCc
Q 002217 768 VGSSLPDGTFKGGTVVNDEEPTLEQLCTLHKCIAKVTEEIEGTRFNTGISAMMEFINAAYKWEKHPRKIIEPFILLLAPY 847 (952)
Q Consensus 768 ~~~~~~~~~~~~~~~~~~~~~d~~~l~~l~~~i~~v~~~~e~~~f~~ai~~l~~f~~~~~~~~~~~~~vL~~l~~LLaPf 847 (952)
......+..+.+.........+.|+++++++++++|+++|++|+|++|++++|+|+|.+++|....+++++.+++|||||
T Consensus 782 ~~~~~~~~~~~~~~~~~~~~~d~~ll~kl~~~ikkVte~~e~y~FntAi~~lmef~n~l~~~~~~~~~~l~~ll~LLaPf 861 (963)
T PLN02563 782 VGAPLPDGSFRDGTVVTDEEPSLEQLRLLHKCIAKVTEEIESTRFNTAISAMMEFTNAAYKWDKVPREAIEPFVLLLSPY 861 (963)
T ss_pred HHhhhcccccCccccccCCcchHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHhh
Confidence 65321111121111111224578999999999999999999999999999999999999988767789999999999999
Q ss_pred chhHHHHHHHHcCCCCCccccCCCCCCccccCCCceEEeEEEeceeEEEEEecCCCCHHHHHHHHccCHHHHhhhCCCCe
Q 002217 848 APHMSEELWFRLGHSNSLAYESFPKANPDYLKDSTIVLPIQINGKTRGTIQVEEGCSEEEAFKLASLDEKLSKFLDGKSI 927 (952)
Q Consensus 848 ~P~iaEElw~~L~~~~sV~~~~WP~~~~~~l~~~~i~l~vqVngk~r~~i~v~~~~s~e~~~~~~~~~~~~~~~l~gk~i 927 (952)
|||+|||||+.|+..+||++++||+++++++.+++++++||||||+|++++++.++++|++.++++++++++++|+||+|
T Consensus 862 ~PhiaEELW~~Lg~~~sv~~~~WP~~d~~~l~~~~~~~~vqiNGK~r~~i~v~~~~~~~~i~~~a~~~~~v~~~l~~k~i 941 (963)
T PLN02563 862 APHLAEELWFRLGHSNSLAYEPWPEANPSYLVDDTVVLPVQINGKTRGTIEVEEGCSEDDAFALASQDEKLSKYLDGKEI 941 (963)
T ss_pred hhhHHHHHHHHcCCCCeeeeCCCCCCCHHHhhcCceEEEEEECCEEeeEEEeCCCCCHHHHHHHHhcCHHHHHHhCCCCc
Confidence 99999999999998889999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEEEeCCcEEEEEecCCcccc
Q 002217 928 KKRIYVPGRILNVILDRQNIKA 949 (952)
Q Consensus 928 ~kvi~vp~kiin~v~~~~~~~~ 949 (952)
+|+|+|||||||||++++++++
T Consensus 942 ~K~I~vp~kivNiV~~~~~~~~ 963 (963)
T PLN02563 942 KKRIYVPGKILNVILKQQNVKV 963 (963)
T ss_pred eEEEEECCcEEEEEeCCCcCCC
Confidence 9999999999999999999875
No 2
>TIGR00396 leuS_bact leucyl-tRNA synthetase, eubacterial and mitochondrial family. The leucyl-tRNA synthetases belong to two families so broadly different that they are represented by separate models. This model includes both eubacterial and mitochondrial leucyl-tRNA synthetases. It generates higher scores for some valyl-tRNA synthetases than for any archaeal or eukaryotic cytosolic leucyl-tRNA synthetase. Note that the enzyme from Aquifex aeolicus is split into alpha and beta chains; neither chain is long enough to score above the trusted cutoff, but the alpha chain scores well above the noise cutoff. The beta chain must be found by a model and search designed for partial length matches.
Probab=100.00 E-value=6.4e-183 Score=1671.34 Aligned_cols=836 Identities=52% Similarity=0.918 Sum_probs=749.4
Q ss_pred CChhhhhHHHHHHHHHcCCCCCCCCCCCCCCcEEEEcCCCCCCCCCCCCchhHHHHHHHHHHHHHHHcCCcccccccccc
Q 002217 64 YPFHEIEPKWQSYWENNRTFRTPDEIDTSKPKFYVLDMFPYPSGAGLHVGHPLGYTATDILARLKRMQGYNVLHPMGWDA 143 (952)
Q Consensus 64 y~~~~iE~k~~~~W~~~~~f~~~~~~~~~k~kf~i~~~~Pypng~~lHiGH~~~~~~~Di~~Ry~r~~G~~V~~~~G~D~ 143 (952)
|||.++|++||++|+++++|+... +.++++||+++|||||||. |||||+++|+++|+++||+||+||+|+|++||||
T Consensus 1 y~~~~iE~kwq~~W~~~~~f~~~~--~~~k~k~~v~~~pPy~nG~-lHiGH~~~~~~~Dvi~Ry~rm~G~~V~~~~G~D~ 77 (842)
T TIGR00396 1 YNHIEIEEKWQQKWKENKVFKFTD--DSNKPKYYILDMFPYPSGA-LHMGHVRNYTITDVLSRYYRMKGYNVLHPMGWDA 77 (842)
T ss_pred CCHHHHHHHHHHHHHhcCCcccCC--CCCCCCEEEEcCCCCCCCc-cccchhHHHHHHHHHHHHHHhcCCceeccCCcCC
Confidence 899999999999999999999763 4578999999999999998 9999999999999999999999999999999999
Q ss_pred cChHHHHHHHHhCCCchHHHHHHHHHHHHHHHHcCCccccCCcccCCChhHHHHHHHHHHHHHHCCceeeeccccccCCC
Q 002217 144 FGLPAEQYAIETGTHPKITTLRNINRFRTQLKSLGFSYDWNREISTIEPAYYKWTQWIFLQLLKRGLAYQAEVPVNWCPA 223 (952)
Q Consensus 144 ~Glpie~~a~~~g~~~~~~~~~~~~~~~~~l~~lgi~~Dw~~~~~T~~~~~~~~v~~~f~~L~~kGliy~~~~~v~wc~~ 223 (952)
||+|||++|++.|++|.+++.++++.|+++|++||+++||++++.|+||+|++++||+|.+|+++|+||++.++|+|||.
T Consensus 78 ~Glpie~~a~~~g~~p~~~~~~~~~~~~~~~~~lG~~~Dw~~~~~T~d~~y~~~~~~~F~~L~~kGliy~~~~~v~wcp~ 157 (842)
T TIGR00396 78 FGLPAENAAIKRGIHPAKWTYENIANMKKQLQALGFSYDWDREIATCDPEYYKWTQWIFLELFEKGLAYVKEADVNWCPN 157 (842)
T ss_pred CChHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHhCCcccCCCCcccCCHHHHHHHHHHHHHHHHCCCeEeeccceEEeCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCcccCchhhc-cCccccCCCCeEEeeccccchhhhhhhhHhhccCCCCC-CchHHHHHHHhhhccCCCceEEEEEecCC
Q 002217 224 LGTVLANEEVV-DGVSERGGHPVIRKPMRQWMLKITEYADRLLDDLDDLD-WPESVKEMQRNWIGRSEGAEMDFRVLDSD 301 (952)
Q Consensus 224 ~~t~ls~~Ev~-~~~~~~~~~~~~~~~~~~~~~~i~~y~~~l~~~l~~~~-~p~~~~~~~~~~i~~s~~~~v~f~~~~~~ 301 (952)
|+|+||++||+ +|+|++||.++++++++||||+|++|+++|+++|+.++ ||++++.||++|||+|.|++|+|++.+.
T Consensus 158 ~~t~La~~ev~~~g~~~~~g~~v~~~~~~~~f~~i~~~~~~l~~~l~~~~~wp~~v~~~q~~wig~s~g~~i~f~~~~~- 236 (842)
T TIGR00396 158 DGTVLANEQVDSDGRSWRGGTPVEKKELKQWFLKITAYAEELLNDLEELDHWPESVKEMQRNWIGKSEGVEITFKIADH- 236 (842)
T ss_pred CCCCccHHHHhhcCccccCCCcceEeecceeEEehhhhHHHHHHHHhhhccccHHHHHHHHhcccccceEEEEEEcCCC-
Confidence 99999999996 48999999999999999999999999999999999986 9999999999999999999999998421
Q ss_pred CCccCcEEEEecCCcchhccccEEEECCCCccchhhccccchHHHHHHHHHHhccchhhHhhhhhcccccccceEEecCC
Q 002217 302 GQERDIKITVYTTRPDTIFGATYLVVAPEHPLLSSLVSTTQSQNIEEYKNLASRKSDLERTELQKEKTGVFSGCYARNPA 381 (952)
Q Consensus 302 ~~~~~~~i~i~TT~P~Tl~g~~~v~v~p~~~y~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~P~ 381 (952)
+.+|+|||||||||||++||+|||+|+|+..... ....+++|++.....+..++....+.++|.|+|.+|.||+
T Consensus 237 ----~~~l~v~TTrP~Tl~g~~~iav~p~~~~~~~~~~--~~~~v~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~P~ 310 (842)
T TIGR00396 237 ----KEKIAVFTTRPDTIFGVTYLALAPEHPLVEKIAE--NNPKVAAFIKKILQKTTTERTKETKLKKGVFTGIKAIHPL 310 (842)
T ss_pred ----CCEEEEEeCCcHHhhhccEEEECCCCHHHHhhhc--chHHHHHHHHHHhccCchhhhhhhcccccEecCCEEECCC
Confidence 3589999999999999999999999999876532 3345777877766655555555567789999999999999
Q ss_pred CCCcccEEecCcccCCCCCCceEecCCCChhhHHHHHHcCCceeeeecCCCCCCccccccccccceEEcccCcccccccC
Q 002217 382 SGEAIPIWVADYVLGSYGTGAIMAVPAHDTRDHEFALKFDISIHSVVMPDDESSSQSEKAYTGEGLIVNSSNLISGLDIN 461 (952)
Q Consensus 382 ~~~~~pv~~~~~V~~~~GTG~V~~~Pah~~~D~~~~~~~~L~i~~vv~~~~~~~~~~~~~y~~~g~l~~~~~~~~~~~~~ 461 (952)
+|+.+||+.++||++++|||+||+|||||++||++|++||||+.++|++.+.. ....+|+++|+|+++. .++
T Consensus 311 ~~~~ipi~~~~~V~~~~GTG~V~~~Pahd~~D~~~~~k~~L~i~~vi~~~~~~--~~~~~~~~~G~~~~~~------~~~ 382 (842)
T TIGR00396 311 TGEKIPIWVANYVLASYGTGAVMGVPAHDERDFEFAQKYKLPIKVVIDPAGKN--LKTQAFTEDGVLVNSG------EFN 382 (842)
T ss_pred CCCEeEEEEeCcccCCCCCCeEEEcCCCCHHHHHHHHHhCCCcceeeCCcccc--cccccccCCceEecch------hcC
Confidence 99999999999999999999999999999999999999999999999865321 2234688899999874 499
Q ss_pred CCCHHHHHHHHHHHHHHcCCCcceecccCCceeecccCCCCcccCceEeCCCCceeecCCCCcCCCCCcccccCCCCCCC
Q 002217 462 GLSCQEATSKVIEWAEKTGNGKKKVNYKLRDWLFARQRYWGEPIPVVFLDGTGETVPLHEAELPLTLPELDDFTPTGTGE 541 (952)
Q Consensus 462 gl~~~~a~~~ii~~l~~~~~~~~~~~~~l~DW~ISRQR~WG~PIPv~~~~~~~~~~~~~~~~l~v~lp~~~~~~~~G~~~ 541 (952)
||...+|+++|+++|++.|.+++.++|+++|||||||||||+|||+|||++|| .+++++++||+.+|+. +.+.|.|.
T Consensus 383 Gl~~~~A~~~Ii~~L~~~g~~~~~v~yrlrDW~ISRQRyWG~PIPi~~~~~~g-~~~v~~~~lp~~l~~~--~~~~~~~~ 459 (842)
T TIGR00396 383 GLNSSEAREAIIAMLEKEGKGKRKVNYRLRDWLFSRQRYWGEPIPIIHCEDGG-AVPVPEEDLPVILPEL--VNYDPDGN 459 (842)
T ss_pred CCCHHHHHHHHHHHHHHcCCCCceEEeecccceeecccccCCceEEEEECCCC-eEeCcchhcchhhhhh--hhccCCCC
Confidence 99999999999999999999999999999999999999999999999998876 5678899999999964 34456667
Q ss_pred CCCccccccccccccCCCCCccccCCCccccccccchhheecCCCCchhHhhhhhhhcCCCceeEecCchhhHHHHHHHH
Q 002217 542 PPLSKAVSWVQTTEHSSGKPARRETSTMPQWAGSCWYYLRFMDPKNSKELVDKTKERYWSPVDVYVGGAEHAVLHLLYAR 621 (952)
Q Consensus 542 ~~l~~~~~w~~~~~~~~g~~~~re~d~lD~WfdSswy~~~~~~p~~~~~~~~~~~~~~w~PvDlyv~G~D~~~~HLly~R 621 (952)
+|+..+++|+.+.||.||++++||+|||||||||||||+||++|++...+++++..++|||+|+|+||+||+++||+|+|
T Consensus 460 ~pl~~~~~~~~~~cp~cg~~~~retDtmDtw~dSswy~~r~~~p~~~~~~~~~~~~~~~~PvD~yi~G~dhailHLlyaR 539 (842)
T TIGR00396 460 SPLSRIQEWVNVTCPSCGKPALRETDTMDTFAGSSWYYLRYLDPKNTDQPFDKEKAEYWLPVDLYIGGAEHAILHLLYAR 539 (842)
T ss_pred CchhhhhhhhcCcCccCCCCcEeCCCCCCCcccCCHHHHHhhCCCCcCCCcChHHHhccCCCcEeeccHHHHHHHHHHHH
Confidence 89999999999999999999999999999999999999999999988778888777899999999999999999999999
Q ss_pred HHHHHHHHhcCcCCCCcchhhhhhceeccccceeEEecCCCccccCCCCCcccccccccCccccccccCCceeeccCcch
Q 002217 622 FWHKVLYDIGVVSTKEPFKCVINQGIILGEMQYMVCKDVDGSYISADSTDTLGEYEQESIPEEKVMKSGDFFVMKDNPNI 701 (952)
Q Consensus 622 fw~~~L~~~~~~~~~~PFk~l~~~G~vl~~~~y~~~~d~~g~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~vl~~~~~~ 701 (952)
|||++|++++++.+++||++|++||||++.+ ++++|+|+++++++.. . +.++. . .+.
T Consensus 540 f~~~~l~~~~~~~~~~Pfk~l~~~G~Vl~~~-----~~~~G~~~~~~~~~~~-~---------------~~~~~-~-~~~ 596 (842)
T TIGR00396 540 FWHKFLYDIGYVSTKEPFKKLINQGMVLGFY-----YPPNGKSPPDELTERD-E---------------KAKDK-S-GGE 596 (842)
T ss_pred HHHHHHHhccccCCCccHHHHhccceEEeee-----ecCCCCccChhhhccc-c---------------ccccc-c-CCc
Confidence 9999999999999999999999999999852 4679999999876521 1 01111 1 112
Q ss_pred hhcccccccccCCCCCCChhhHHhhhCchhhhhhhhhcCCCCCCCCCChhhHHHHHHHHHHHHHHHhccCCCCCCCCCCc
Q 002217 702 RLIARAHKMSKSRGNVVNPDDVVTEYGADSLRLYEMFMGPFRDSKTWNTSGIEGVHRFLGRMWRLIVGSSLPDGTFKGGT 781 (952)
Q Consensus 702 ~v~~~g~KMSKSkGNvV~P~eii~~YGaDalRl~ll~~~~~~~~~~~s~~~i~~~~r~l~~l~~~~~~~~~~~~~~~~~~ 781 (952)
.+.+..+|||||+||+|+|.++|++||||++|||+|++++++++.+|+++.++++.++++++|+++.........+....
T Consensus 597 ~~~~~~~KMSKS~GN~v~p~~ii~~ygaDalRl~~l~~~~~~~d~~~~~~~l~~~~~~l~kl~~~~~~~~~~~~~~~~~~ 676 (842)
T TIGR00396 597 LVVVGYEKMSKSKGNGIDPQEIVKKHGADALRLYIMFMGPIAASLEWNDSGLEGARRFLDRVWNLFYNILGELDGKTYLT 676 (842)
T ss_pred ccccchhhhhhcCCCcCCHHHHHHHcCchHHHHHHHhcCCcCCCCccCHHHHHHHHHHHHHHHHHHHHHHhhhcccccCC
Confidence 22334679999999999999999999999999999998999999999999999999999999987732110001110000
Q ss_pred cCCCCCChHHHHHHHHHHHHHHHHHHhcCC-hHHHHHHHHHHHHHHhcccc--hhHHHHHHHHHHhCCcchhHHHHHHHH
Q 002217 782 VVNDEEPTLEQLCTLHKCIAKVTEEIEGTR-FNTGISAMMEFINAAYKWEK--HPRKIIEPFILLLAPYAPHMSEELWFR 858 (952)
Q Consensus 782 ~~~~~~~d~~~l~~l~~~i~~v~~~~e~~~-f~~ai~~l~~f~~~~~~~~~--~~~~vL~~l~~LLaPf~P~iaEElw~~ 858 (952)
.......|+|+++++++++++|+++|++|+ |++|++++|+|+|.++++.. .++++|+.+++|||||+||+|||||+.
T Consensus 677 ~~~l~~~d~~il~~l~~~i~~v~~~~e~y~~fn~ai~~l~~f~n~L~~~~~~~~l~~~l~~ll~lLaPf~PhiaEElW~~ 756 (842)
T TIGR00396 677 PTILEEAQKELRRDVHKFLKKVTEDLEKLESFNTAISAMMILLNALYKAKKDALYLEYLKGFLTVLSPFAPHLAEELWEK 756 (842)
T ss_pred cccCCHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHhhhhhHHHHHHHHH
Confidence 011234689999999999999999999988 99999999999999988653 578999999999999999999999999
Q ss_pred cCCC-CCccccCCCCCCccccCCCceEEeEEEeceeEEEEEecCCCCHHHHHHHHccCHHHHhhhCCCCeEEEEEeCCcE
Q 002217 859 LGHS-NSLAYESFPKANPDYLKDSTIVLPIQINGKTRGTIQVEEGCSEEEAFKLASLDEKLSKFLDGKSIKKRIYVPGRI 937 (952)
Q Consensus 859 L~~~-~sV~~~~WP~~~~~~l~~~~i~l~vqVngk~r~~i~v~~~~s~e~~~~~~~~~~~~~~~l~gk~i~kvi~vp~ki 937 (952)
|+.. .||+.++||+++++++.+++++++||||||+|++++++.+.++++++++++++++++++|+||+|+|+|+|||||
T Consensus 757 l~~~~~sv~~~~wP~~d~~~l~~~~~~~~vqiNGK~r~~i~v~~~~~~~~i~~~a~~~~~v~~~l~gk~i~k~i~v~~kl 836 (842)
T TIGR00396 757 LGSEPFIIKQAKWPKVDETALVEDKVTIVLQVNGKFKAKKTVPKDADEEQVEELAKQDPEVKKYLENKTIKKVIYVPGKL 836 (842)
T ss_pred hCCCCCeeecCCCCCCCHHHHhhcceEEEEEEcCeEEEEEEeCCCCCHHHHHHHHhcCHHHHHHhCCCCceEEEEeCCCE
Confidence 9865 489999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEEec
Q 002217 938 LNVILD 943 (952)
Q Consensus 938 in~v~~ 943 (952)
||||++
T Consensus 837 vNiv~~ 842 (842)
T TIGR00396 837 VNFVIK 842 (842)
T ss_pred EEEEeC
Confidence 999984
No 3
>KOG0435 consensus Leucyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=5.2e-183 Score=1513.09 Aligned_cols=818 Identities=51% Similarity=0.864 Sum_probs=723.5
Q ss_pred hhhHHHHHHHHHcCCCCCCCCCCCCCCcEEEEcCCCCCCCCCCCCchhHHHHHHHHHHHHHHHcCCcccccccccccChH
Q 002217 68 EIEPKWQSYWENNRTFRTPDEIDTSKPKFYVLDMFPYPSGAGLHVGHPLGYTATDILARLKRMQGYNVLHPMGWDAFGLP 147 (952)
Q Consensus 68 ~iE~k~~~~W~~~~~f~~~~~~~~~k~kf~i~~~~Pypng~~lHiGH~~~~~~~Di~~Ry~r~~G~~V~~~~G~D~~Glp 147 (952)
.||+.|+++|.+...|.++ .+.+++| ||++|||||+|. |||||+|.||+.|+++||+||+||+|++|||||.+|||
T Consensus 34 ~iEk~W~~~~~~~~~~~~~--~d~sk~K-YiLsMFPYPSG~-LHiGHvRVYTIsD~laRf~rm~GynVihPMGWDaFGLP 109 (876)
T KOG0435|consen 34 MIEKHWKQYLKDGFPFSKD--SDKSKKK-YILSMFPYPSGA-LHIGHVRVYTISDILARFYRMKGYNVIHPMGWDAFGLP 109 (876)
T ss_pred HHHHHHHHHHhcCCccccc--cccCCCc-eEEEecCCCCCc-ccccceEEEEehHHHHHHHHhcCceeecCCcccccCCc
Confidence 7999999999999888764 5778888 788999999998 99999999999999999999999999999999999999
Q ss_pred HHHHHHHhCCCchHHHHHHHHHHHHHHHHcCCccccCCcccCCChhHHHHHHHHHHHHHHCCceeeeccccccCCCCCcc
Q 002217 148 AEQYAIETGTHPKITTLRNINRFRTQLKSLGFSYDWNREISTIEPAYYKWTQWIFLQLLKRGLAYQAEVPVNWCPALGTV 227 (952)
Q Consensus 148 ie~~a~~~g~~~~~~~~~~~~~~~~~l~~lgi~~Dw~~~~~T~~~~~~~~v~~~f~~L~~kGliy~~~~~v~wc~~~~t~ 227 (952)
+|++|+++|++|+.|+..||++|++||++||++|||+|++.||+|+|++|+||+|.+|+++||+|+.+.+|||||.++|+
T Consensus 110 AENAAiergv~P~sWT~~NI~~Mk~Ql~~lg~~FDWdrEiSTC~PdYYKWTQwiFlkLfe~GLAYq~Ea~VNWDPvD~TV 189 (876)
T KOG0435|consen 110 AENAAIERGVHPASWTINNIAKMKQQLKSLGISFDWDREISTCEPDYYKWTQWIFLKLFEKGLAYQAEAEVNWDPVDKTV 189 (876)
T ss_pred hhhHHHhcCCCchhhhHHHHHHHHHHHHHcCcccccccccccCCcchhHHHHHHHHHHHHhhhhhccccccccCccccee
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCchhh-ccCccccCCCCeEEeeccccchhhhhhhhHhhccCCCC-CCchHHHHHHHhhhccCCCceEEEEEecCCCCcc
Q 002217 228 LANEEV-VDGVSERGGHPVIRKPMRQWMLKITEYADRLLDDLDDL-DWPESVKEMQRNWIGRSEGAEMDFRVLDSDGQER 305 (952)
Q Consensus 228 ls~~Ev-~~~~~~~~~~~~~~~~~~~~~~~i~~y~~~l~~~l~~~-~~p~~~~~~~~~~i~~s~~~~v~f~~~~~~~~~~ 305 (952)
||++|| .+|++||+|++|++++++|||+++|+|+++|+++|+.+ +||+ |++||+||||+|+|+.+.|++.+..+ .
T Consensus 190 LAnEQVD~~G~SWRSGA~VEkK~LrQWfikttaYAk~L~d~L~~L~~W~~-vk~mQrnWIG~~~G~el~F~ll~~~~--~ 266 (876)
T KOG0435|consen 190 LANEQVDADGCSWRSGAKVEKKKLRQWFIKTTAYAKRLLDGLETLPEWPE-VKDMQRNWIGRCDGAELMFPLLDDGS--N 266 (876)
T ss_pred ecchhhcccCccccccchhhHHHHHHHHhhhhHHHHHHHHHHHhhhhhhh-HHHHHHhhcccccceEEEEEeccCCC--C
Confidence 999999 58999999999999999999999999999999999999 6999 99999999999999999999987543 2
Q ss_pred CcEEEEecCCcchhccccEEEECCCCccchhhccccchHHHHHHHHHHhccchhhHhhhhhcccccccceEEecCCCCCc
Q 002217 306 DIKITVYTTRPDTIFGATYLVVAPEHPLLSSLVSTTQSQNIEEYKNLASRKSDLERTELQKEKTGVFSGCYARNPASGEA 385 (952)
Q Consensus 306 ~~~i~i~TT~P~Tl~g~~~v~v~p~~~y~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~P~~~~~ 385 (952)
++.|.||||||+||+|++++++.|+|.++.... .|.+... .++++ .| |.+.+..+.||++|++
T Consensus 267 de~ltv~Tt~Petl~~~~f~vl~~~H~L~~~~~---------~lkefl~-~~~l~------~K-g~~lp~~A~Np~tg~~ 329 (876)
T KOG0435|consen 267 DEILTVYTTRPETLFGASFLVLAPSHSLLDKDS---------SLKEFLS-KSDLP------QK-GVQLPCQAKNPVTGRA 329 (876)
T ss_pred CceEEEEecCchhhccceEEEEcCCchhhhhhc---------hHHHhhh-hhhcc------cc-CcccceeeccCCCCce
Confidence 689999999999999999999999999865433 1222111 12221 23 8889999999999999
Q ss_pred ccEEecCcccCCCCCCceEecCCCChhhHHHHHHcCCceeeeecCCCCCCccccccccccceEEcccCcccccccCC-CC
Q 002217 386 IPIWVADYVLGSYGTGAIMAVPAHDTRDHEFALKFDISIHSVVMPDDESSSQSEKAYTGEGLIVNSSNLISGLDING-LS 464 (952)
Q Consensus 386 ~pv~~~~~V~~~~GTG~V~~~Pah~~~D~~~~~~~~L~i~~vv~~~~~~~~~~~~~y~~~g~l~~~~~~~~~~~~~g-l~ 464 (952)
+||+.++||...+|||+||++|+|+.+|+++|++-++..+.++.. .|.+.|+...+. .+.| +.
T Consensus 330 iPv~~a~~v~~~~gt~a~m~~P~hd~rD~ela~~~~~~~~~~~~~----------~f~~~~K~~~~~------~~tn~~~ 393 (876)
T KOG0435|consen 330 IPVVVADYVLDPYGTGAVMGAPGHDQRDKELAQKIGIKWIICIEV----------IFTNFGKKNEQK------AFTNLDI 393 (876)
T ss_pred eeEEEechhccCCCcceeeeccCcccchhHHHhcccceeEEEEee----------eecchhhhhccc------cccchhH
Confidence 999999999999999999999999999999999966665555432 222223222221 1345 44
Q ss_pred HHHHHHHHHHHHHHcCCCcceecccCCceeecccCCCCcccCceEeCCCCceeecCCCCcCCCCCcccccCCCCCCCCCC
Q 002217 465 CQEATSKVIEWAEKTGNGKKKVNYKLRDWLFARQRYWGEPIPVVFLDGTGETVPLHEAELPLTLPELDDFTPTGTGEPPL 544 (952)
Q Consensus 465 ~~~a~~~ii~~l~~~~~~~~~~~~~l~DW~ISRQR~WG~PIPv~~~~~~~~~~~~~~~~l~v~lp~~~~~~~~G~~~~~l 544 (952)
.+.|+.+++++++..|.|+..++|+|+||+||||||||||||++||++|| +++|++++|||.||++++|.+.| +||
T Consensus 394 ~q~a~~~l~~~~~~~g~g~~~vs~kLkDWLiSRQRyWGTPIPivhc~~cG-~vpVpes~LPV~LP~l~~~~~kG---~Pl 469 (876)
T KOG0435|consen 394 RQNAALKLFQFAERKGVGGYVVSYKLKDWLISRQRYWGTPIPIVHCDDCG-AVPVPESELPVTLPELNDFTPKG---PPL 469 (876)
T ss_pred HHHHHHHHHHHHHhcCCCcceecchhhhhhhhhhhccCCCcceEEcCCCC-cccCcHHHCCcccccccccCCCC---Ccc
Confidence 55689999999999999999999999999999999999999999999887 99999999999999999998877 799
Q ss_pred ccccccccccccCCCCCccccCCCccccccccchhheecCCCCchhHhhhhhhhcCCCceeEecCchhhHHHHHHHHHHH
Q 002217 545 SKAVSWVQTTEHSSGKPARRETSTMPQWAGSCWYYLRFMDPKNSKELVDKTKERYWSPVDVYVGGAEHAVLHLLYARFWH 624 (952)
Q Consensus 545 ~~~~~w~~~~~~~~g~~~~re~d~lD~WfdSswy~~~~~~p~~~~~~~~~~~~~~w~PvDlyv~G~D~~~~HLly~Rfw~ 624 (952)
+.+.+|+++.||+||++++|||||||||+||||||+||+||+|++++|++..+.+|||||+||||+|||++||+|+|||+
T Consensus 470 s~~~e~vn~~cP~cg~pAkRETDTMDTFvDSsWYYlRylDpkN~e~~~d~a~a~k~MPVDvYIGG~EHAvlHLlYaRF~~ 549 (876)
T KOG0435|consen 470 SKADEWVNVDCPRCGEPAKRETDTMDTFVDSSWYYLRYLDPKNPEEPFDKAKAKKNMPVDVYIGGKEHAVLHLLYARFIA 549 (876)
T ss_pred cchhhheeccCccCCCcccccccccchhhccceeeEeecCCCCcccccchhhhhccCceeEEeccHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhcCcCCCCcchhhhhhceeccccceeEEecC-CCccccCCCCCcccccccccCccccccccCCceeeccCcchhh
Q 002217 625 KVLYDIGVVSTKEPFKCVINQGIILGEMQYMVCKDV-DGSYISADSTDTLGEYEQESIPEEKVMKSGDFFVMKDNPNIRL 703 (952)
Q Consensus 625 ~~L~~~~~~~~~~PFk~l~~~G~vl~~~~y~~~~d~-~g~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~vl~~~~~~~v 703 (952)
++|.++|++.+.|||++|++||||+|+ +|++. +|+|++++++...+... |.+|+++++.+.+
T Consensus 550 kFl~di~~~~t~EPF~~Li~QGmV~G~----tf~~~~sG~yl~~~ev~~~nd~~-------------~~~vlk~~~e~~v 612 (876)
T KOG0435|consen 550 KFLKDIGVVSTAEPFTKLITQGMVRGK----TFRTKESGKYLGPEEVQQVNDHQ-------------NKFVLKNDKEVVV 612 (876)
T ss_pred HHHhhcCCCcCCCcHHHHHhhhcccce----EEecCCCCccCCHHHhhhhcCCc-------------ceeEecCCCccee
Confidence 999999999999999999999999998 46664 89999999887654321 4688888877766
Q ss_pred cccccccccCCCCCCChhhHHhhhCchhhhhhhhhcCCCCCCCCCChhhHHHHHHHHHHHHHHHhccCC--CCCCCCCCc
Q 002217 704 IARAHKMSKSRGNVVNPDDVVTEYGADSLRLYEMFMGPFRDSKTWNTSGIEGVHRFLGRMWRLIVGSSL--PDGTFKGGT 781 (952)
Q Consensus 704 ~~~g~KMSKSkGNvV~P~eii~~YGaDalRl~ll~~~~~~~~~~~s~~~i~~~~r~l~~l~~~~~~~~~--~~~~~~~~~ 781 (952)
.. .+||||||+|+|||.+++.+||+|++|+|+++++|+++.++|+++.+.|+.|++.|+|++..+... .++...+..
T Consensus 613 ~t-~eKMSKSK~NGVdP~~~v~~yG~D~tRl~ilf~ap~~~~~nW~es~i~Gi~rwl~riw~l~~~~~~ar~~g~~~d~~ 691 (876)
T KOG0435|consen 613 VT-YEKMSKSKHNGVDPADVVLEYGVDTTRLYILFAAPPRDPINWNESAIPGIKRWLQRIWALVSQILQARDDGKAKDLK 691 (876)
T ss_pred ee-HHHhhhcccCCCCHHHHHHHhCchHHHHHHHhhCCcccccccccccchhHHHHHHHHHHHHHHHHHHHhcCCccccc
Confidence 66 999999999999999999999999999999999999999999999999999999999988743211 122222222
Q ss_pred cCCC--CCChHHHHHHHHHHHHHHHHHHhc-CChHHHHHHHHHHHHHHhccc-------chhHHHHHHHHHHhCCcchhH
Q 002217 782 VVND--EEPTLEQLCTLHKCIAKVTEEIEG-TRFNTGISAMMEFINAAYKWE-------KHPRKIIEPFILLLAPYAPHM 851 (952)
Q Consensus 782 ~~~~--~~~d~~~l~~l~~~i~~v~~~~e~-~~f~~ai~~l~~f~~~~~~~~-------~~~~~vL~~l~~LLaPf~P~i 851 (952)
...+ ...++.+.+..|.+++.|++.|+. +.+|+||+.+|.|.|.+.+.. ...+.+|+.+++||+|++||+
T Consensus 692 ~~td~~dae~~kl~~~~n~fi~~vt~~~e~~~slNtaIS~~m~ltN~l~~a~k~~~~h~~~~~~al~~lv~mlaP~aPh~ 771 (876)
T KOG0435|consen 692 KLTDGFDAETRKLKETYNFFIKQVTEHYEVLFSLNTAISDMMGLTNALKKALKIVLVHSPEFERALEALVIMLAPFAPHV 771 (876)
T ss_pred ccccccchhHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhcChHHHHHHHHHHHHHhccCchh
Confidence 2222 223456678899999999999987 779999999999999876533 345689999999999999999
Q ss_pred HHHHHHHcCCCCCc-cccCCCCCCccccCCCceEEeEEEeceeEEEEEecCC-CCH--HHHHHHHccCHHHHhhhCCCCe
Q 002217 852 SEELWFRLGHSNSL-AYESFPKANPDYLKDSTIVLPIQINGKTRGTIQVEEG-CSE--EEAFKLASLDEKLSKFLDGKSI 927 (952)
Q Consensus 852 aEElw~~L~~~~sV-~~~~WP~~~~~~l~~~~i~l~vqVngk~r~~i~v~~~-~s~--e~~~~~~~~~~~~~~~l~gk~i 927 (952)
|+|+|+.|++..+. ....||++++.++.+.+ .++|+|||+.|+.++++.+ .++ +++.+.+++.+.+.++|.||+|
T Consensus 772 asE~Ws~l~~~~~~~~~~~WP~vd~~~~~~~~-~~~v~INGk~~g~i~v~~~~l~~~~d~~~e~a~~~e~~~ryL~gkkI 850 (876)
T KOG0435|consen 772 ASELWSALANDLSWVSDVKWPEVDPDYLIEFE-VLPVQINGKVRGKIEVDRRILEEMMDDALEFALQTEDGRRYLKGKKI 850 (876)
T ss_pred HHHHHHHHhccccchhccCCccCChhhhcccc-eeeEEEcCEecceeecchHHHHHHHHHHHHHHhcCHHHHHHhcCchh
Confidence 99999999876554 33469999999987766 8899999999999999986 344 7899999999999999999999
Q ss_pred EEEEEeC-CcEEEEEecCCccc
Q 002217 928 KKRIYVP-GRILNVILDRQNIK 948 (952)
Q Consensus 928 ~kvi~vp-~kiin~v~~~~~~~ 948 (952)
+|.++|| +|||||++++.+.+
T Consensus 851 kks~~~~r~kiin~i~dr~~~k 872 (876)
T KOG0435|consen 851 KKSFYVPRRKIINFILDRIQAK 872 (876)
T ss_pred hhheechhHHHHHHHHHhhhcc
Confidence 9999999 79999999876654
No 4
>COG0495 LeuS Leucyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=3.2e-174 Score=1538.44 Aligned_cols=799 Identities=50% Similarity=0.879 Sum_probs=738.4
Q ss_pred cCCChhhhhHHHHHHHHHcCCCCCCCCCCCCC-CcEEEEcCCCCCCCCCCCCchhHHHHHHHHHHHHHHHcCCccccccc
Q 002217 62 RAYPFHEIEPKWQSYWENNRTFRTPDEIDTSK-PKFYVLDMFPYPSGAGLHVGHPLGYTATDILARLKRMQGYNVLHPMG 140 (952)
Q Consensus 62 ~~y~~~~iE~k~~~~W~~~~~f~~~~~~~~~k-~kf~i~~~~Pypng~~lHiGH~~~~~~~Di~~Ry~r~~G~~V~~~~G 140 (952)
..|++.+||+|||++|+++++|+... +.++ +|||+++|+|||||. |||||+|||++.||++||+||+||||+||||
T Consensus 3 ~~y~~~~IE~KWQ~~W~e~~~Fe~~~--d~~~~~Kfyvl~mfPYpSG~-LHvGH~r~Yti~Dv~aRykRm~GyNVL~PMG 79 (814)
T COG0495 3 SRYNPREIEEKWQKRWEEAKVFEADE--DSDKPEKFYVLVMFPYPSGA-LHVGHVRNYTIGDVIARYKRMQGYNVLHPMG 79 (814)
T ss_pred cccchHHHHHHHHHHHHhcCCcccCC--CCCCCCceEEEeCCCCCCCC-cccCccccccHHHHHHHHHHhcCCeecccCc
Confidence 46999999999999999999999874 3344 699999999999998 9999999999999999999999999999999
Q ss_pred ccccChHHHHHHHHhCCCchHHHHHHHHHHHHHHHHcCCccccCCcccCCChhHHHHHHHHHHHHHHCCceeeecccccc
Q 002217 141 WDAFGLPAEQYAIETGTHPKITTLRNINRFRTQLKSLGFSYDWNREISTIEPAYYKWTQWIFLQLLKRGLAYQAEVPVNW 220 (952)
Q Consensus 141 ~D~~Glpie~~a~~~g~~~~~~~~~~~~~~~~~l~~lgi~~Dw~~~~~T~~~~~~~~v~~~f~~L~~kGliy~~~~~v~w 220 (952)
||++|+|||++|++.|.+|+.|+..|++.|++||++||+++||+|++.|+||+|++++||+|.+|+++||||+++.+|+|
T Consensus 80 wdafGlPae~~A~~~~~~P~~wt~~ni~~~k~qlk~lG~siDW~Ref~T~Dp~Yyk~~QW~F~kL~ekGL~y~~~~~Vnw 159 (814)
T COG0495 80 WDAFGLPAENAAIKIGTDPAKWTYYNIAYMKKQLKSLGFSIDWRREFATCDPEYYKWIQWQFLKLYEKGLAYRKEAPVNW 159 (814)
T ss_pred ccccCchHHHHHHHhCCChHHHHHHHHHHHHHHHHHhCCccccccceecCCccHHHHHHHHHHHHHHCCCEEecccccee
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCcccCchhhccCccccCCCCeEEeeccccchhhhhhhhHhhccCCCCC--CchHHHHHHHhhhccCCCceEEEEEe
Q 002217 221 CPALGTVLANEEVVDGVSERGGHPVIRKPMRQWMLKITEYADRLLDDLDDLD--WPESVKEMQRNWIGRSEGAEMDFRVL 298 (952)
Q Consensus 221 c~~~~t~ls~~Ev~~~~~~~~~~~~~~~~~~~~~~~i~~y~~~l~~~l~~~~--~p~~~~~~~~~~i~~s~~~~v~f~~~ 298 (952)
||.|+|+|+|+||.+|.|+|||.+|++++++||||+||+|+++|+++|+.++ ||++|+.||+||||+|.|+.|.|.+.
T Consensus 160 cP~d~tvlaneqv~~g~~~r~~~~V~~kel~qw~~kit~yae~ll~~l~~l~~~wPE~Vk~mq~nWIg~s~g~~v~f~~~ 239 (814)
T COG0495 160 CPVDGTVLANEQVIDGGCWRCGEPVEIKELTQWFFKITDYADELLDDLDKLATLWPETVKGMQRNWIGPSEGYEVAFVVD 239 (814)
T ss_pred CCCcCCccccceeecCCcccCCCceeEeeeEEEEEEechhHHHHHhhhhhhccCCchhHHHHHHcCcCCCCCeEEEEecC
Confidence 9999999999999999999999999999999999999999999999999997 99999999999999999999999983
Q ss_pred cCCCCccCcEEEEecCCcchhccccEEEECCCCccchhhccccchHHHHHHHHHHhccchhhHhhhhhcccccccceEEe
Q 002217 299 DSDGQERDIKITVYTTRPDTIFGATYLVVAPEHPLLSSLVSTTQSQNIEEYKNLASRKSDLERTELQKEKTGVFSGCYAR 378 (952)
Q Consensus 299 ~~~~~~~~~~i~i~TT~P~Tl~g~~~v~v~p~~~y~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~l~g~~~~ 378 (952)
+... ...+.|+||||+|++|++++++.|+|+++..++.+++...+.+|+..+...+..++......++|.++|.++.
T Consensus 240 ~~~~---~~~~~vfttr~dt~~gvt~~~~a~~h~lv~~~~~~~~~~~~a~fv~~~~~~~~~~~~~~~~~k~gv~~g~~a~ 316 (814)
T COG0495 240 GEEE---IVSIEVFTTRPDTLFGVTYVVLAPEHPLVGKLVTNPQTPLVAEFVDECKGTGVVESVPAHAEKDGVFLGGYAI 316 (814)
T ss_pred Cccc---ceeeeeeeccCccccCeEEEEEeCCchHHHHHhcCccchhHHHHHHHhcCCCceeeeeccCCCcceecccccc
Confidence 2111 3679999999999999999999999999999988887788899999888888877766667889999999999
Q ss_pred cCCCCCcccEEecCcccCCCCCCceEecCCCChhhHHHHHHcCCceeeeecCCCCCCccccccccccceEEcccCccccc
Q 002217 379 NPASGEAIPIWVADYVLGSYGTGAIMAVPAHDTRDHEFALKFDISIHSVVMPDDESSSQSEKAYTGEGLIVNSSNLISGL 458 (952)
Q Consensus 379 ~P~~~~~~pv~~~~~V~~~~GTG~V~~~Pah~~~D~~~~~~~~L~i~~vv~~~~~~~~~~~~~y~~~g~l~~~~~~~~~~ 458 (952)
||++++.+|||.+|||.+.+|||+||+||+|+++|+++|.+|+||+..+|...++ ....+|.++|+|+||..
T Consensus 317 ~p~~~e~iPi~~a~~vl~~ygtgavm~vpahd~rd~efA~~y~l~i~~vi~~~~~---~~~~~~~~~g~linS~~----- 388 (814)
T COG0495 317 NPVNGEKIPVWIANYVLMEYGTGAVMGVPAHDERDLEFATKYKLPIKKVIMPEGT---VGKKVYEGEGVLINSGG----- 388 (814)
T ss_pred CCCCCCcCCEEEeCcccccccccceecCCCCCchhhHHHHhcCCCeEEEEecCCC---cccceeccCceEecccc-----
Confidence 9999999999999999999999999999999999999999999999999987644 34567779999999964
Q ss_pred ccCCCCHHHHHHHHHHHHHHcCCCcceecccCCceeecccCCCCcccCceEeCCCCceeecCCCCcCCCCCcccccCCCC
Q 002217 459 DINGLSCQEATSKVIEWAEKTGNGKKKVNYKLRDWLFARQRYWGEPIPVVFLDGTGETVPLHEAELPLTLPELDDFTPTG 538 (952)
Q Consensus 459 ~~~gl~~~~a~~~ii~~l~~~~~~~~~~~~~l~DW~ISRQR~WG~PIPv~~~~~~~~~~~~~~~~l~v~lp~~~~~~~~G 538 (952)
++|+..+++...++.++.+.+.++..++|++|||++|||||||+|||+++|+.| ..+++++++||+.||+...+.++|
T Consensus 389 -~~gl~~e~a~~~~~~~l~~~~~~q~~v~Y~lrdW~~srqRywg~pipii~~e~~-~~~~~~~d~Lpv~lp~~~~~~gt~ 466 (814)
T COG0495 389 -LDGLDYEEAKVKIRCGLVKRGLGQWFVNYRLRDWLKSRQRYWGEPIPIIHCEDC-GVVPVPEDWLPVKLPERVRGLGTG 466 (814)
T ss_pred -ccCcchhHHHHHHHHhHHHhcCCceEEecccchHHHHHHHHhCCCcceeEcccC-CcccCchHhcCcccccccccCCCC
Confidence 999999888888899999999999999999999999999999999999999875 588999999999999987776555
Q ss_pred CCCCCCccccccccccccCCCCCccccCCCccccccccchhheecCCCCc-hhHhhhhhhhcCCCceeEecCchhhHHHH
Q 002217 539 TGEPPLSKAVSWVQTTEHSSGKPARRETSTMPQWAGSCWYYLRFMDPKNS-KELVDKTKERYWSPVDVYVGGAEHAVLHL 617 (952)
Q Consensus 539 ~~~~~l~~~~~w~~~~~~~~g~~~~re~d~lD~WfdSswy~~~~~~p~~~-~~~~~~~~~~~w~PvDlyv~G~D~~~~HL 617 (952)
+||...++|+.+.|+. +++.||+||||+|++|||||+||.+|.+. +..++++.++||||||+|+||+|||+|||
T Consensus 467 ---~pL~~~~~W~~~s~~~--s~~~ret~Tm~~~~~sswy~~r~~d~~~~~~~~~~~e~~~yW~PVD~yigG~ehavlHL 541 (814)
T COG0495 467 ---SPLPWDEEWVIESLPD--STAYRETDTMDTFIDSSWYYLRFFDPIFLGELPFDREEFNYWYPVDLYIGGIEHAVLHL 541 (814)
T ss_pred ---CCCCCCcceEEEecCC--CceeeehhhhhHhcccccccHhhcChhcCccchhcHHHHhcccChheeecchhHHHHHH
Confidence 7999999999999986 89999999999999999999999999998 68888888999999999999999999999
Q ss_pred HHHHHHHHHHHHhcCcCCCCcchhhhhhceeccccceeEEecCCCccccCCCCCcccccccccCccccccccCCceeecc
Q 002217 618 LYARFWHKVLYDIGVVSTKEPFKCVINQGIILGEMQYMVCKDVDGSYISADSTDTLGEYEQESIPEEKVMKSGDFFVMKD 697 (952)
Q Consensus 618 ly~Rfw~~~L~~~~~~~~~~PFk~l~~~G~vl~~~~y~~~~d~~g~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~vl~~ 697 (952)
||+||||++|++.|++..+|||++|++||||+++
T Consensus 542 ly~rF~Hkal~d~g~~p~~epf~~L~~qGmVl~~---------------------------------------------- 575 (814)
T COG0495 542 LYFRFFHKALFDEGLVPKDEPFKKLITQGMVLGE---------------------------------------------- 575 (814)
T ss_pred HHHHHHHHHhcccCcCCCccchhhhhccceEEec----------------------------------------------
Confidence 9999999999999999999999999999999863
Q ss_pred CcchhhcccccccccCCCCCCChhhHHhhhCchhhhhhhhhcCCCCCCCCCChhhHHHHHHHHHHHHHHHhccCCCCCCC
Q 002217 698 NPNIRLIARAHKMSKSRGNVVNPDDVVTEYGADSLRLYEMFMGPFRDSKTWNTSGIEGVHRFLGRMWRLIVGSSLPDGTF 777 (952)
Q Consensus 698 ~~~~~v~~~g~KMSKSkGNvV~P~eii~~YGaDalRl~ll~~~~~~~~~~~s~~~i~~~~r~l~~l~~~~~~~~~~~~~~ 777 (952)
+|+||||||||+|+|+++|++||||++|+|+|+++|+.++.+|+++++++++|||.|+|+++....-..
T Consensus 576 --------~g~KMSKSKgN~v~p~~~i~~yGADt~Rl~~m~~ap~~~d~~W~e~gv~g~~rfL~r~~~l~~~~~~~~--- 644 (814)
T COG0495 576 --------EGEKMSKSKGNVVDPEEAVEKYGADTVRLYIMFAAPPEQDLEWSESGVEGARRFLQRVWNLVKEHLEKL--- 644 (814)
T ss_pred --------CCCccccccCCCCCHHHHHHHhCchHHHHHHHhhCChhhCCCCChhhhHHHHHHHHHHHHHHHHhhhcc---
Confidence 278999999999999999999999999999999999999999999999999999999999985421000
Q ss_pred CCCccCCCCCCh-HHHHHHHHHHHHHHHHHHhc-CChHHHHHHHHHHHHHHhcccc-------hhHHHHHHHHHHhCCcc
Q 002217 778 KGGTVVNDEEPT-LEQLCTLHKCIAKVTEEIEG-TRFNTGISAMMEFINAAYKWEK-------HPRKIIEPFILLLAPYA 848 (952)
Q Consensus 778 ~~~~~~~~~~~d-~~~l~~l~~~i~~v~~~~e~-~~f~~ai~~l~~f~~~~~~~~~-------~~~~vL~~l~~LLaPf~ 848 (952)
... ....+ ......++++++.|++.++. +.||+|++++|+|+|.+.++.. .++++++.+++||+||+
T Consensus 645 --~~~--~~~~~~~~~~~~~h~~~~~v~~~~e~~~~~nt~i~~~m~l~N~l~~~~~~~~~~~~~l~~~l~~~v~lLaP~a 720 (814)
T COG0495 645 --VEE--LTKEQGKEDRWLLHRTIKKVTEDFEARQTFNTAIAALMELLNALRKYLRRTEGDRKVLREALETWVRLLAPFA 720 (814)
T ss_pred --ccc--ccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHhcccc
Confidence 000 01111 33445678889999999988 9999999999999999876532 35689999999999999
Q ss_pred hhHHHHHHHHcCCCCCccccCCCCCCccccCCCceEEeEEEeceeEEEEEecCCCCHHHHHHHHccCHHHHhhhCCCCeE
Q 002217 849 PHMSEELWFRLGHSNSLAYESFPKANPDYLKDSTIVLPIQINGKTRGTIQVEEGCSEEEAFKLASLDEKLSKFLDGKSIK 928 (952)
Q Consensus 849 P~iaEElw~~L~~~~sV~~~~WP~~~~~~l~~~~i~l~vqVngk~r~~i~v~~~~s~e~~~~~~~~~~~~~~~l~gk~i~ 928 (952)
||+|||||+.|+++++|+.++||+++++.+.++++++.+|+|||.|+.+.+++++++++++.++++.+.++++|+|++++
T Consensus 721 PH~aEElW~~lg~~~~v~~~~wP~~de~~l~~~~~~~~vqvngk~r~~~~~~~~a~~~~~~~~~~~~~~v~~~l~~~~~~ 800 (814)
T COG0495 721 PHIAEELWEELGNEGFVSNAPWPEPDEEALVEDEVEIVVQVNGKVRAREVVAADADEEKVKEIALADEEVQKFLQGKTIK 800 (814)
T ss_pred cHHHHHHHHHhcCCCceeeCCCCCCChhhccccceEEEEEEeeEEEEEEEEcCCCCHHHHHHHHhccHHHHHHHcCCCcc
Confidence 99999999999977799999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEEeCCcEEEEEe
Q 002217 929 KRIYVPGRILNVIL 942 (952)
Q Consensus 929 kvi~vp~kiin~v~ 942 (952)
|+|+||||++|||+
T Consensus 801 k~i~VP~k~vn~v~ 814 (814)
T COG0495 801 KVIAVPGKPVNIVE 814 (814)
T ss_pred eEEecCCcceEEeC
Confidence 99999999999984
No 5
>PRK00390 leuS leucyl-tRNA synthetase; Validated
Probab=100.00 E-value=2e-172 Score=1576.63 Aligned_cols=797 Identities=57% Similarity=1.023 Sum_probs=723.8
Q ss_pred cCCChhhhhHHHHHHHHHcCCCCCCCCCCCCCCcEEEEcCCCCCCCCCCCCchhHHHHHHHHHHHHHHHcCCcccccccc
Q 002217 62 RAYPFHEIEPKWQSYWENNRTFRTPDEIDTSKPKFYVLDMFPYPSGAGLHVGHPLGYTATDILARLKRMQGYNVLHPMGW 141 (952)
Q Consensus 62 ~~y~~~~iE~k~~~~W~~~~~f~~~~~~~~~k~kf~i~~~~Pypng~~lHiGH~~~~~~~Di~~Ry~r~~G~~V~~~~G~ 141 (952)
.+||+.++|++||++|+++++|+... +. +++||+++|||||||. |||||+++|+++|+++||+||+|++|+|++||
T Consensus 3 ~~y~~~~iE~~w~~~W~~~~~f~~~~--~~-~~~~~i~~~pPy~nG~-lHiGH~~~~~~~Dii~Ry~rm~G~~V~~~~G~ 78 (805)
T PRK00390 3 ERYNPKEIEKKWQKYWEENKTFKTTE--DS-SKKYYVLDMFPYPSGG-LHMGHVRNYTIGDVIARYKRMQGYNVLHPMGW 78 (805)
T ss_pred CCCCHHHHHHHHHHHHHHCCCcccCc--cC-CCCEEEEccCCCCCCC-cchhhhHHHHHHHHHHHHHHhcCCcccccCcc
Confidence 57999999999999999999999763 22 3479999999999998 99999999999999999999999999999999
Q ss_pred cccChHHHHHHHHhCCCchHHHHHHHHHHHHHHHHcCCccccCCcccCCChhHHHHHHHHHHHHHHCCceeeeccccccC
Q 002217 142 DAFGLPAEQYAIETGTHPKITTLRNINRFRTQLKSLGFSYDWNREISTIEPAYYKWTQWIFLQLLKRGLAYQAEVPVNWC 221 (952)
Q Consensus 142 D~~Glpie~~a~~~g~~~~~~~~~~~~~~~~~l~~lgi~~Dw~~~~~T~~~~~~~~v~~~f~~L~~kGliy~~~~~v~wc 221 (952)
||||+|||++|++.|++|.+++.++++.|+++|++||+++||++++.|+||+|+++++|+|.+|+++|+||++.++|+||
T Consensus 79 D~~Glpie~~a~~~g~~~~~~~~~~~~~~~~~~~~lGi~~Dw~~~~~T~~~~~~~~v~~~f~~L~~~Gliy~~~~~v~wc 158 (805)
T PRK00390 79 DAFGLPAENAAIKTGTHPAEWTYENIANMKKQLKSLGFSYDWSREIATCDPEYYKWTQWIFLKLYEKGLAYRKESPVNWC 158 (805)
T ss_pred CCCCCHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHhCCcccCCCCeecCCHHHHHHHHHHHHHHHHCCCEEEecCEEEec
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCcccCchhhccCccccCCCCeEEeeccccchhhhhhhhHhhccCCCC-CCchHHHHHHHhhhccCCCceEEEEEecC
Q 002217 222 PALGTVLANEEVVDGVSERGGHPVIRKPMRQWMLKITEYADRLLDDLDDL-DWPESVKEMQRNWIGRSEGAEMDFRVLDS 300 (952)
Q Consensus 222 ~~~~t~ls~~Ev~~~~~~~~~~~~~~~~~~~~~~~i~~y~~~l~~~l~~~-~~p~~~~~~~~~~i~~s~~~~v~f~~~~~ 300 (952)
|.|+|+||++||++++|++||.++++++++||||+|++|+++|+++|+.+ .||+.++.||++|||+|.|++|+|++.+.
T Consensus 159 p~~~t~La~~ev~~~~~~~~~~~~~~~~~~~~f~~i~~~~~~L~~~l~~~~~w~~~v~~~~~~wig~~~~~~i~f~~~~~ 238 (805)
T PRK00390 159 PVDGTVLANEQVIDGRCWRCGAPVEKKELRQWFLKITDYADELLDDLDKLEDWPEKVKTMQRNWIGRSEGAEVTFKVEDS 238 (805)
T ss_pred CCcCCCCCHHHhhCCeecccCCeeEEEecceeeEecchhHHHHHHHHHhhccCcHHHHHHHHhhccccceEEEEEEccCC
Confidence 99999999999999999999999999999999999999999999999988 59999999999999999999999998531
Q ss_pred CCCccCcEEEEecCCcchhccccEEEECCCCccchhhccccchHHHHHHHHHHhccchhhHhhhhhcccccccceEEecC
Q 002217 301 DGQERDIKITVYTTRPDTIFGATYLVVAPEHPLLSSLVSTTQSQNIEEYKNLASRKSDLERTELQKEKTGVFSGCYARNP 380 (952)
Q Consensus 301 ~~~~~~~~i~i~TT~P~Tl~g~~~v~v~p~~~y~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~P 380 (952)
+.+++||||||||||||+||||||+++|+...... ...++.|+.....+.++++......+.|.|+|.+|.||
T Consensus 239 -----~~~l~v~TTrPeTl~g~~aiav~p~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~g~~~~~P 311 (805)
T PRK00390 239 -----DEKIEVFTTRPDTLFGATYLVLAPEHPLVEKLAEQ--NPAVAAFIEECKKKSDLERQTETKEKTGVFTGLYAIHP 311 (805)
T ss_pred -----CCEEEEEeCCchHhhcceEEEECCCChhHHhhhcc--hHHHHHHHHHHhhhcchhhhhcccceeeeecCcEEECC
Confidence 36899999999999999999999999998776532 34466676665555554443322345667999999999
Q ss_pred CCCCcccEEecCcccCCCCCCceEecCCCChhhHHHHHHcCCceeeeecCCCCCCccccccccccceEEcccCccccccc
Q 002217 381 ASGEAIPIWVADYVLGSYGTGAIMAVPAHDTRDHEFALKFDISIHSVVMPDDESSSQSEKAYTGEGLIVNSSNLISGLDI 460 (952)
Q Consensus 381 ~~~~~~pv~~~~~V~~~~GTG~V~~~Pah~~~D~~~~~~~~L~i~~vv~~~~~~~~~~~~~y~~~g~l~~~~~~~~~~~~ 460 (952)
++++++||+.++||++++|||+||+|||||++||++|++||||+.++|++++........+|.++|.|+++. .+
T Consensus 312 ~~~~~ipi~~~~~V~~~~GTG~V~~~Pah~~~D~~~~~~~~L~~~~~i~~~g~~~~~~~~~~~~~g~~~~~~------~~ 385 (805)
T PRK00390 312 LTGEKIPVWIADYVLMDYGTGAVMAVPAHDQRDFEFAKKYGLPIKPVIEPGDGDEDISEEAYTGDGVLINSG------EL 385 (805)
T ss_pred CCCCeeeEEEeccccCCCCCCeEEEcCCCCHHHHHHHHHcCCCceeeeCCCCcccccccccccCCeEEEecc------cc
Confidence 999999999999999999999999999999999999999999999999875321122445788899998764 49
Q ss_pred CCCCHHHHHHHHHHHHHHcCCCcceecccCCceeecccCCCCcccCceEeCCCCceeecCCCCcCCCCCcccccCCCCCC
Q 002217 461 NGLSCQEATSKVIEWAEKTGNGKKKVNYKLRDWLFARQRYWGEPIPVVFLDGTGETVPLHEAELPLTLPELDDFTPTGTG 540 (952)
Q Consensus 461 ~gl~~~~a~~~ii~~l~~~~~~~~~~~~~l~DW~ISRQR~WG~PIPv~~~~~~~~~~~~~~~~l~v~lp~~~~~~~~G~~ 540 (952)
+|+...+|+++|++.|++.|.+++.++|+++|||||||||||+|||+|||++|| .+++++++||+.+|+ .+.+.|.
T Consensus 386 ~Gl~~~~a~~~Ii~~L~~~g~~~~~v~~~l~DW~ISRQR~WG~PIPi~~~~~~g-~~~v~~~~l~~~l~~--~~~~~~~- 461 (805)
T PRK00390 386 DGLDSEEAKEAIIAWLEEKGLGKRKVNYRLRDWGISRQRYWGEPIPIIHCEDCG-IVPVPEEDLPVVLPE--DVVPDGT- 461 (805)
T ss_pred CCCCHHHHHHHHHHHHHHcCCCCCceEEECCCccccccccCCCceeEEEECCCC-ceeCchHhhhhhhhh--hcccCCC-
Confidence 999999999999999999999999999999999999999999999999999887 567788999999885 3455565
Q ss_pred CCCCccccccccccccCCCCCccccCCCccccccccchhheecCCCCchhHhhhhhhhcCCCceeEecCchhhHHHHHHH
Q 002217 541 EPPLSKAVSWVQTTEHSSGKPARRETSTMPQWAGSCWYYLRFMDPKNSKELVDKTKERYWSPVDVYVGGAEHAVLHLLYA 620 (952)
Q Consensus 541 ~~~l~~~~~w~~~~~~~~g~~~~re~d~lD~WfdSswy~~~~~~p~~~~~~~~~~~~~~w~PvDlyv~G~D~~~~HLly~ 620 (952)
++|+..+.+|++..|+.||+.++||+|||||||||||||++|++|+++...++++..++|||+|+|+||+||+++||+|+
T Consensus 462 ~~~~~~~~~~~~~~~~~~g~~~~re~Dv~DtwfdSsw~~~~~~~p~~~~~~~~~~~~~~~~P~Dly~~G~D~~i~hL~y~ 541 (805)
T PRK00390 462 GSPLAKHPEWVNVTCPKCGKPARRETDTMDTFVGSSWYYLRYTDPHNDEAPFDKEAANYWLPVDQYIGGIEHAVLHLLYA 541 (805)
T ss_pred CChhhhchhhhCCCccccCCCceeCCcccccccccccHHHHhcCcccccCcCChHHhhCcCCCcEEeccHHHHHHHHHHH
Confidence 56888899999999999999999999999999999999999999998777888888899999999999999999999999
Q ss_pred HHHHHHHHHhcCcCCCCcchhhhhhceeccccceeEEecCCCccccCCCCCcccccccccCccccccccCCceeeccCcc
Q 002217 621 RFWHKVLYDIGVVSTKEPFKCVINQGIILGEMQYMVCKDVDGSYISADSTDTLGEYEQESIPEEKVMKSGDFFVMKDNPN 700 (952)
Q Consensus 621 Rfw~~~L~~~~~~~~~~PFk~l~~~G~vl~~~~y~~~~d~~g~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~vl~~~~~ 700 (952)
||||++|+++|++.+++||++|++||||
T Consensus 542 Rf~~~~l~~~~~~~~~~Pfk~v~~~G~v---------------------------------------------------- 569 (805)
T PRK00390 542 RFFTKVLRDLGLVSSDEPFKKLLTQGMV---------------------------------------------------- 569 (805)
T ss_pred HHHHHHHHHhhcccCCcchhhheecCcE----------------------------------------------------
Confidence 9999999999988899999999999964
Q ss_pred hhhcccccccccCCCCCCChhhHHhhhCchhhhhhhhhcCCCCCCCCCChhhHHHHHHHHHHHHHHHhccCCCCCCCCCC
Q 002217 701 IRLIARAHKMSKSRGNVVNPDDVVTEYGADSLRLYEMFMGPFRDSKTWNTSGIEGVHRFLGRMWRLIVGSSLPDGTFKGG 780 (952)
Q Consensus 701 ~~v~~~g~KMSKSkGNvV~P~eii~~YGaDalRl~ll~~~~~~~~~~~s~~~i~~~~r~l~~l~~~~~~~~~~~~~~~~~ 780 (952)
|||||+||+|+|.++|++||||++|||++++++++++.+|+++.++++.++++++|+++.........+.
T Consensus 570 --------KMSKS~GN~i~p~~~i~~ygaD~lRl~l~~~~~~~~d~~~s~~~l~~~~~~l~kl~~~~~~~~~~~~~~~-- 639 (805)
T PRK00390 570 --------KMSKSKGNVVDPDDIIEKYGADTARLFEMFAGPPEKDLEWSDSGVEGAYRFLQRVWRLVVDAKGEAGALD-- 639 (805)
T ss_pred --------EeCCCCCCCCCHHHHHHHcChHHHHHHHHhcCCccCCcccCHHHHHHHHHHHHHHHHHHHHhhhcccccC--
Confidence 8999999999999999999999999999988999999999999999999999999998743110001111
Q ss_pred ccCCCCCChHHHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHhcccc-----hhHHHHHHHHHHhCCcchhHHHHH
Q 002217 781 TVVNDEEPTLEQLCTLHKCIAKVTEEIEGTRFNTGISAMMEFINAAYKWEK-----HPRKIIEPFILLLAPYAPHMSEEL 855 (952)
Q Consensus 781 ~~~~~~~~d~~~l~~l~~~i~~v~~~~e~~~f~~ai~~l~~f~~~~~~~~~-----~~~~vL~~l~~LLaPf~P~iaEEl 855 (952)
......|+|+++++++++++++++|++|+|++|++.+|+|++.+++++. .++++++.+++||||||||+||||
T Consensus 640 --~~~~~~D~~il~~l~~~i~~v~~~~e~~~f~~ai~~l~~f~n~lsk~~~~~~~~~l~~~l~~l~~lLaPf~P~iaEEl 717 (805)
T PRK00390 640 --VAALSEDKELRRKLHKTIKKVTEDIERLRFNTAIAALMELVNALYKAEDEQDKAVLREALEILVRLLAPFAPHLAEEL 717 (805)
T ss_pred --cccChhhHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHH
Confidence 1123468899999999999999999999999999999999999988652 456899999999999999999999
Q ss_pred HHHcCCCCCccccCCCCCCccccCCCceEEeEEEeceeEEEEEecCCCCHHHHHHHHccCHHHHhhhCCCCeEEEEEeCC
Q 002217 856 WFRLGHSNSLAYESFPKANPDYLKDSTIVLPIQINGKTRGTIQVEEGCSEEEAFKLASLDEKLSKFLDGKSIKKRIYVPG 935 (952)
Q Consensus 856 w~~L~~~~sV~~~~WP~~~~~~l~~~~i~l~vqVngk~r~~i~v~~~~s~e~~~~~~~~~~~~~~~l~gk~i~kvi~vp~ 935 (952)
|+.|+..+||+.++||.+++.++.++.+++++|||||+|+.++++.+.+++++.+++++++.++++|+||+|+|+|+|||
T Consensus 718 w~~L~~~~sv~~~~wP~~~~~~~~~~~~~~~iqingk~r~~i~v~~~~~~~~i~~~a~~~~~i~~~l~~k~i~k~I~vp~ 797 (805)
T PRK00390 718 WEKLGHEGSIANAPWPTADEAALVEDEVTIVVQVNGKVRGKIEVPADASKEEIEALALADEKVQKFLEGKTIKKVIVVPG 797 (805)
T ss_pred HHHcCCCCeeEecCCCCCCHHHhhhhccEEEEEEccceeEEEEeCCCCCHHHHHHHHhcCHHHHHHhCCCCccEEEEeCC
Confidence 99998888999999999999988888999999999999999999999999999999999999999999999999999999
Q ss_pred cEEEEEec
Q 002217 936 RILNVILD 943 (952)
Q Consensus 936 kiin~v~~ 943 (952)
||||||++
T Consensus 798 kiiNiv~~ 805 (805)
T PRK00390 798 KLVNIVVK 805 (805)
T ss_pred CEEEEEeC
Confidence 99999984
No 6
>COG0060 IleS Isoleucyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=1.8e-136 Score=1223.94 Aligned_cols=692 Identities=27% Similarity=0.451 Sum_probs=543.0
Q ss_pred cccccCCChhhhhHHHHHHHHHcCCCCCCC-CCCCCCCcEEEEcCCCCCCCCCCCCchhHHHHHHHHHHHHHHHcCCccc
Q 002217 58 QVVKRAYPFHEIEPKWQSYWENNRTFRTPD-EIDTSKPKFYVLDMFPYPSGAGLHVGHPLGYTATDILARLKRMQGYNVL 136 (952)
Q Consensus 58 ~~~~~~y~~~~iE~k~~~~W~~~~~f~~~~-~~~~~k~kf~i~~~~Pypng~~lHiGH~~~~~~~Di~~Ry~r~~G~~V~ 136 (952)
+.++.++|+.++|++++++|+++++|++.. +.++++|+|+++|||||+||. +|||||+|.+++|++.||++|+||+|.
T Consensus 12 T~fpmr~~l~~~E~~i~~~W~e~~iy~k~~~~~~~g~~~FvfhDGPPyANG~-iHiGHalnKilKDiI~Ry~~m~G~~v~ 90 (933)
T COG0060 12 TDFPMRANLPKKEPKILKFWEENDIYEKIREERNKGKPKFVLHDGPPYANGN-IHIGHALNKILKDIIVRYKTMQGYDVP 90 (933)
T ss_pred CCCCccCChhhcCHHHHHHHHHhhHHHHHHHHHhCCCCcEEEeCCCCCCCCC-cchhhhHHHhhhhhhhhhhcccCCcCC
Confidence 457788999999999999999999999887 367899999999999999998 999999999999999999999999999
Q ss_pred ccccccccChHHHHHHHH-hCC---------------CchHHHHHHHHHHHHHHHHcCCccccCCcccCCChhHHHHHHH
Q 002217 137 HPMGWDAFGLPAEQYAIE-TGT---------------HPKITTLRNINRFRTQLKSLGFSYDWNREISTIEPAYYKWTQW 200 (952)
Q Consensus 137 ~~~G~D~~Glpie~~a~~-~g~---------------~~~~~~~~~~~~~~~~l~~lgi~~Dw~~~~~T~~~~~~~~v~~ 200 (952)
+++||||||||||.++++ .|+ .|++++.++++.|+++|+|||++.||+++|.|||++|++.++|
T Consensus 91 ~~pGWDcHGLPIE~~vek~lg~~k~~i~~~~~~efr~~Cr~~a~~~v~~q~~~f~RLGv~~Dw~npY~Tmd~~ye~~~~~ 170 (933)
T COG0060 91 YVPGWDCHGLPIELKVEKKLGIGKKDIESFGVEEFREKCREFALEQVDEQKEQFKRLGVWGDWENPYKTMDPSYEESVWW 170 (933)
T ss_pred CCCCCcCCCchHHHHHHHHhCCCcchhhhcCHHHHHHHHHHHHHHHHHHHHHHHHhheEeeccCCCeecCCHHHHHHHHH
Confidence 999999999999998876 352 2567788899999999999999999999999999999999999
Q ss_pred HHHHHHHCCceeeeccccccCCCCCcccCchhhccCccccCCCCeEEeeccccchhhhhhhhHhhccCCCCCCchHHHHH
Q 002217 201 IFLQLLKRGLAYQAEVPVNWCPALGTVLANEEVVDGVSERGGHPVIRKPMRQWMLKITEYADRLLDDLDDLDWPESVKEM 280 (952)
Q Consensus 201 ~f~~L~~kGliy~~~~~v~wc~~~~t~ls~~Ev~~~~~~~~~~~~~~~~~~~~~~~i~~y~~~l~~~l~~~~~p~~~~~~ 280 (952)
+|.+|++|||||++.+||+|||+|+|+||++||+++. +
T Consensus 171 ~f~~~~~kGllyrg~Kpv~wsp~c~TaLAeaEvey~d--~---------------------------------------- 208 (933)
T COG0060 171 AFKELYEKGLLYRGYKPVPWSPRCETALAEAEVEYGD--V---------------------------------------- 208 (933)
T ss_pred HHHHHHHCCCeecCCeeeeecCCCCcchhhhhhcccc--c----------------------------------------
Confidence 9999999999999999999999999999999999642 0
Q ss_pred HHhhhccCCCceEEEEEecCCCCccCcEEEEecCCcchhccccEEEECCCCccchhhccccchHHHHHHHHHHhccchhh
Q 002217 281 QRNWIGRSEGAEMDFRVLDSDGQERDIKITVYTTRPDTIFGATYLVVAPEHPLLSSLVSTTQSQNIEEYKNLASRKSDLE 360 (952)
Q Consensus 281 ~~~~i~~s~~~~v~f~~~~~~~~~~~~~i~i~TT~P~Tl~g~~~v~v~p~~~y~~~~~~~~~~~~~~~y~~~~~~~~~~~ 360 (952)
+|++++|+|++.+. |...+.+++||||||||||+|.||+|||+..|+.+.+..+.-...++..+....+...+
T Consensus 209 ------~dpSIyV~F~v~~~-~~~~~~~lviWTTTPWTLPaN~aiav~pd~~Y~lv~~~~~~~IlA~~lve~~~~~~~~~ 281 (933)
T COG0060 209 ------KDPSIYVKFPVKDE-GLDENAYLVIWTTTPWTLPANLAIAVHPDLDYVLVEVNGEKLILAKALVESVAKKAGVE 281 (933)
T ss_pred ------CCceEEEEEEeccC-CCCCCcEEEEEeCCCCCchhcceeEeCCCcceEEEEECCEEEEEhHHHHHHHHHHcCCc
Confidence 47899999999764 23457999999999999999999999999999877665532221222222222222222
Q ss_pred -HhhhhhcccccccceEEecCCCC----CcccEEecCcccCCCCCCceEecCCCChhhHHHHHHcC-CceeeeecCCCCC
Q 002217 361 -RTELQKEKTGVFSGCYARNPASG----EAIPIWVADYVLGSYGTGAIMAVPAHDTRDHEFALKFD-ISIHSVVMPDDES 434 (952)
Q Consensus 361 -~~~~~~~~~~~l~g~~~~~P~~~----~~~pv~~~~~V~~~~GTG~V~~~Pah~~~D~~~~~~~~-L~i~~vv~~~~~~ 434 (952)
-..+...+|..|.|..|.|||.. +..||+.+|||+.+.|||+||+|||||++||.+|+++| ||+.++||+. |.
T Consensus 282 ~~~vl~~~kG~~Leg~~y~hPf~~~~~~~~~~v~~gd~VT~d~GTG~VHtAPghGeeDy~vg~~~g~l~v~~pVD~~-G~ 360 (933)
T COG0060 282 DYEVLETFKGSELEGLRYEHPFYDFVYDRAFPVILGDHVTLDDGTGLVHTAPGHGEEDYEVGKKYGLLEVLNPVDDN-GR 360 (933)
T ss_pred ceEEeEEeehhhhCCCEeeCCcccccccceeeEEecCeEecCCCccceecCCCCCHHHHHHHHHcCCcCCccccCCC-cc
Confidence 12355677889999999999995 89999999999999999999999999999999999999 7999999986 56
Q ss_pred Ccccccccccc----------------ceEEcccCc--------------------ccccccCCCCHHHH-HHHHHHHHH
Q 002217 435 SSQSEKAYTGE----------------GLIVNSSNL--------------------ISGLDINGLSCQEA-TSKVIEWAE 477 (952)
Q Consensus 435 ~~~~~~~y~~~----------------g~l~~~~~~--------------------~~~~~~~gl~~~~a-~~~ii~~l~ 477 (952)
++++.+.|.|. |.|+.++.+ +||+.++.+..+-- ...-++|.+
T Consensus 361 yt~~~~~~~G~~v~dAn~~Ii~~Lk~~g~Ll~~e~i~HsYPhcWR~ktPlIyRAt~QWFi~v~~~r~~~l~~i~~v~w~P 440 (933)
T COG0060 361 YTEEAPKYEGLFVKDANKKIIEDLKEKGNLLKSEKIEHSYPHCWRTKTPLIYRATPQWFVSVDKLRDKMLKEINKVNWVP 440 (933)
T ss_pred ccccchhhCCceeccCCHHHHHHHHhCCceeeeeeEEeCCCcccCCCCeeEEeecchheeEHHHHHHHHHHHHhcceEEC
Confidence 65554444431 333332211 24443332211100 111234444
Q ss_pred HcCCCcce-ecccCCceeecccCCCCcccCceEeCCCCceeecCCCCcCCCCCcccccCCCCCCCCCCcccccccccccc
Q 002217 478 KTGNGKKK-VNYKLRDWLFARQRYWGEPIPVVFLDGTGETVPLHEAELPLTLPELDDFTPTGTGEPPLSKAVSWVQTTEH 556 (952)
Q Consensus 478 ~~~~~~~~-~~~~l~DW~ISRQR~WG~PIPv~~~~~~~~~~~~~~~~l~v~lp~~~~~~~~G~~~~~l~~~~~w~~~~~~ 556 (952)
++|.++.. ..-+.+||||||||+||+|||+|+|++||+++++ .++|--. ....++..|...+.-..+.+ +...|+
T Consensus 441 ~~~~~R~~~mve~r~DW~ISRQR~WGvPiPi~~~~~~g~~~~~-~~El~e~--~~~~~~~~g~~~w~~~~ide-l~~~~~ 516 (933)
T COG0060 441 DWGKNRFGNMVENRPDWCISRQRYWGVPIPVWYCKETGEILVI-TEELEEL--VGQLVEEKGIDDWHRPDIDE-LLPPCP 516 (933)
T ss_pred hhHHHHHHHHHcCCCcceeeccccCCCceeEEEECCCCCeecc-HHHHHHH--HHHHhhhcCchhhhccchHh-hcCCCC
Confidence 44422211 1125789999999999999999999999988875 2222100 01122334443222111111 224566
Q ss_pred CCCCCccccCCCcccccccc-chhheecCCCCchhHhhhhhhhcCCCc---eeEecCchhhHHHHHHHHHHHHHHHHhcC
Q 002217 557 SSGKPARRETSTMPQWAGSC-WYYLRFMDPKNSKELVDKTKERYWSPV---DVYVGGAEHAVLHLLYARFWHKVLYDIGV 632 (952)
Q Consensus 557 ~~g~~~~re~d~lD~WfdSs-wy~~~~~~p~~~~~~~~~~~~~~w~Pv---Dlyv~G~D~~~~HLly~Rfw~~~L~~~~~ 632 (952)
.||..++|++|||||||||+ .+++..+ |.+ +.++|. |+|+||+||+ ||||++++.++.
T Consensus 517 ~~g~~~~rv~DvlDVWFDSGs~~~a~~~-~~~----------~~~~~~~~aD~~lEGsDQ~-------RGWF~Ssl~~s~ 578 (933)
T COG0060 517 EDGKEYRRVPDVLDVWFDSGSTPYAVLH-PRE----------NLKFPALFADFYLEGSDQT-------RGWFYSSLLTST 578 (933)
T ss_pred CCcceeEecCcceEEEEcCCCCcccccC-Ccc----------cccCccccCcEEEEecccc-------chhHHHHHHHHH
Confidence 88999999999999999995 4444433 433 233555 9999999996 999887766664
Q ss_pred -cCCCCcchhhhhhceeccccceeEEecCCCccccCCCCCcccccccccCccccccccCCceeeccCcchhhcccccccc
Q 002217 633 -VSTKEPFKCVINQGIILGEMQYMVCKDVDGSYISADSTDTLGEYEQESIPEEKVMKSGDFFVMKDNPNIRLIARAHKMS 711 (952)
Q Consensus 633 -~~~~~PFk~l~~~G~vl~~~~y~~~~d~~g~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~vl~~~~~~~v~~~g~KMS 711 (952)
+.++.||++|++||+|+++ +|+|||
T Consensus 579 a~~~~aPYk~vltHGfvlDe------------------------------------------------------~GrKMS 604 (933)
T COG0060 579 ALFGRAPYKNVLTHGFVLDE------------------------------------------------------KGRKMS 604 (933)
T ss_pred HHcCCchHHHHhhcccEECC------------------------------------------------------CCCCcc
Confidence 5779999999999999965 389999
Q ss_pred cCCCCCCChhhHHhhhCchhhhhhhhhcCCCCCCCCCChhhHH---HHHHHHHHHHHHHhccCCCCCCCCCCccC--CCC
Q 002217 712 KSRGNVVNPDDVVTEYGADSLRLYEMFMGPFRDSKTWNTSGIE---GVHRFLGRMWRLIVGSSLPDGTFKGGTVV--NDE 786 (952)
Q Consensus 712 KSkGNvV~P~eii~~YGaDalRl~ll~~~~~~~~~~~s~~~i~---~~~r~l~~l~~~~~~~~~~~~~~~~~~~~--~~~ 786 (952)
||+||+|+|.+++++||||+||||++++. +..++.++++.++ .++|.|+|+++|++++ +.+++....... ...
T Consensus 605 KSlGN~v~P~~V~~~yGADiLRLwv~ssd-~~~dl~~s~~il~~~~~~~r~irNt~rF~l~n-l~~fdp~~~~~~~~~~~ 682 (933)
T COG0060 605 KSLGNVVDPQDVIDKYGADILRLWVASSD-YWEDLRFSDEILKQVREVYRKIRNTYRFLLGN-LDDFDPKKDAVLPEELR 682 (933)
T ss_pred ccCCCcCCHHHHHHhhCchheeeeeeecC-chhccccCHHHHHHHHHHHHHHHHHHHHHHHh-ccCCCccccccchhhcc
Confidence 99999999999999999999999999766 7778888877665 4567777788888776 433333221111 234
Q ss_pred CChHHHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHH-HHHhcccc----------------------hhHHHHHHHHHH
Q 002217 787 EPTLEQLCTLHKCIAKVTEEIEGTRFNTGISAMMEFI-NAAYKWEK----------------------HPRKIIEPFILL 843 (952)
Q Consensus 787 ~~d~~~l~~l~~~i~~v~~~~e~~~f~~ai~~l~~f~-~~~~~~~~----------------------~~~~vL~~l~~L 843 (952)
..|+|++++++.++++++++|++|+|+++++++++|+ .++++||. .++++|..++++
T Consensus 683 ~~Drwil~rl~~l~~~v~eaye~y~f~~v~~~l~~F~~~dLS~~Yld~~kdr~y~~~~~s~~rraa~~~Ly~il~~l~~~ 762 (933)
T COG0060 683 ELDRWILSRLNSLVKEVREAYENYDFHKVVRALMNFVSEDLSNWYLDIIKDRLYTEAADSPDRRAAQTTLYHILKALVRL 762 (933)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhhhhHHHHHHHHHHhhhcCCCCHHHHHHHHHHHHHHHHHHHH
Confidence 5699999999999999999999999999999999999 78888752 235799999999
Q ss_pred hCCcchhHHHHHHHHcCCC---CCccccCCCCCCcccc
Q 002217 844 LAPYAPHMSEELWFRLGHS---NSLAYESFPKANPDYL 878 (952)
Q Consensus 844 LaPf~P~iaEElw~~L~~~---~sV~~~~WP~~~~~~l 878 (952)
||||+||+|||+|+.|... +|||++.||.+++...
T Consensus 763 lAPilPftaEeiw~~l~~~~~~eSVhl~~~p~~~~~~~ 800 (933)
T COG0060 763 LAPILPFTAEEIWQNLPGERKEESVHLEDWPEVDEELI 800 (933)
T ss_pred HcccchhhHHHHHHhCccCCCCceeEeccCCccccccc
Confidence 9999999999999999654 8999999999877665
No 7
>COG0525 ValS Valyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=5.6e-131 Score=1162.29 Aligned_cols=618 Identities=31% Similarity=0.541 Sum_probs=521.5
Q ss_pred ccCCChhhhhHHHHHHHHHcCCCCCCCCCCCCCCcEEEEcCCCCCCCCCCCCchhHHHHHHHHHHHHHHHcCCccccccc
Q 002217 61 KRAYPFHEIEPKWQSYWENNRTFRTPDEIDTSKPKFYVLDMFPYPSGAGLHVGHPLGYTATDILARLKRMQGYNVLHPMG 140 (952)
Q Consensus 61 ~~~y~~~~iE~k~~~~W~~~~~f~~~~~~~~~k~kf~i~~~~Pypng~~lHiGH~~~~~~~Di~~Ry~r~~G~~V~~~~G 140 (952)
.+.|||.++|++|+++|++++.|++.. +.+.++|.|.-+||+++|. ||||||+++++.|+++||+||+||+|+|++|
T Consensus 2 ~~~ydp~~iE~k~~~~W~~~~~f~~~~--~~~~~~f~I~~PPPNVTG~-LHmGHAl~~tl~D~l~RykRM~G~~vl~~pG 78 (877)
T COG0525 2 PKTYDPKEIEEKWYKKWEESGYFKPDP--NEDKPPFSIDTPPPNVTGS-LHMGHALNYTLQDILARYKRMRGYNVLWPPG 78 (877)
T ss_pred CCCCChhhhhHHHHHHHHhcCCccCCC--CCCCCCcEEeCCCCCCCCc-ccchhhhhHHHHHHHHHHHHcCCCeeecCCC
Confidence 467999999999999999999999763 2221559999999999998 9999999999999999999999999999999
Q ss_pred ccccChHHHHHHHH----hCCC------------chHHHHHHHHHHHHHHHHcCCccccCCcccCCChhHHHHHHHHHHH
Q 002217 141 WDAFGLPAEQYAIE----TGTH------------PKITTLRNINRFRTQLKSLGFSYDWNREISTIEPAYYKWTQWIFLQ 204 (952)
Q Consensus 141 ~D~~Glpie~~a~~----~g~~------------~~~~~~~~~~~~~~~l~~lgi~~Dw~~~~~T~~~~~~~~v~~~f~~ 204 (952)
|||+|+|+|..+++ .|++ +.+|.+++...|++|+++||+|+||+++++||||.+.++|+.+|.+
T Consensus 79 ~DhAGIaTq~~VEk~l~~~g~~r~d~gRe~Fl~~~weWk~e~~~~I~~Q~~rLG~S~DWsrE~fTmD~~~s~av~~~Fv~ 158 (877)
T COG0525 79 TDHAGIATQVVVEKQLAAEGITRHDLGREEFLKKCWEWKEESGGTIREQLRRLGVSVDWSRERFTMDPGLSRAVQEAFVR 158 (877)
T ss_pred CCCCCchHHHHHHHHHHHcCCCccccCHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcccccccccCCHHHHHHHHHHHHH
Confidence 99999999887764 2654 3468889999999999999999999999999999999999999999
Q ss_pred HHHCCceeeeccccccCCCCCcccCchhhccCccccCCCCeEEeeccccchhhhhhhhHhhccCCCCCCchHHHHHHHhh
Q 002217 205 LLKRGLAYQAEVPVNWCPALGTVLANEEVVDGVSERGGHPVIRKPMRQWMLKITEYADRLLDDLDDLDWPESVKEMQRNW 284 (952)
Q Consensus 205 L~~kGliy~~~~~v~wc~~~~t~ls~~Ev~~~~~~~~~~~~~~~~~~~~~~~i~~y~~~l~~~l~~~~~p~~~~~~~~~~ 284 (952)
||++|||||++++|||||.|+|+||+.||++. +..|.
T Consensus 159 Ly~~GlIYr~~~lVNWcP~~~TAiSd~EVe~~--e~~g~----------------------------------------- 195 (877)
T COG0525 159 LYEKGLIYRGERLVNWCPKCRTAISDIEVEYK--EVEGK----------------------------------------- 195 (877)
T ss_pred HHHCCceeecCCcccCCCccccchhhhhhccc--eeeee-----------------------------------------
Confidence 99999999999999999999999999999852 11111
Q ss_pred hccCCCceEEEEEecCCCCccCcEEEEecCCcchhccccEEEECCCCccchhhccccchHHHHHHHHHHhccchhhHhhh
Q 002217 285 IGRSEGAEMDFRVLDSDGQERDIKITVYTTRPDTIFGATYLVVAPEHPLLSSLVSTTQSQNIEEYKNLASRKSDLERTEL 364 (952)
Q Consensus 285 i~~s~~~~v~f~~~~~~~~~~~~~i~i~TT~P~Tl~g~~~v~v~p~~~y~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~ 364 (952)
-.+|+|++.+++ .+|+|+|||||||+|++||+|||+| ++|.+
T Consensus 196 -----L~~i~y~l~~~~-----~~i~VATTRPEtmlgdtAVaVhP~D---------------eRYk~------------- 237 (877)
T COG0525 196 -----LYYIKYPLADGD-----GYLVVATTRPETLLGDTAVAVHPDD---------------ERYKH------------- 237 (877)
T ss_pred -----EEEEEEecCCCC-----ceEEEEecCccccccceEEEECCCC---------------hhhHh-------------
Confidence 137999996532 5999999999999999999999999 45655
Q ss_pred hhcccccccceEEecCCCCCcccEEecCcccCCCCCCceEecCCCChhhHHHHHHcCCceeeeecCCCCCCccccccccc
Q 002217 365 QKEKTGVFSGCYARNPASGEAIPIWVADYVLGSYGTGAIMAVPAHDTRDHEFALKFDISIHSVVMPDDESSSQSEKAYTG 444 (952)
Q Consensus 365 ~~~~~~~l~g~~~~~P~~~~~~pv~~~~~V~~~~GTG~V~~~Pah~~~D~~~~~~~~L~i~~vv~~~~~~~~~~~~~y~~ 444 (952)
|.|+.+.+|+.|+++||+.++||++++|||+||+|||||++||+++++|+||++++++++
T Consensus 238 -------LvGk~v~lPl~~r~IpIiaD~~VD~eFGTG~VkItpahD~nD~e~~krh~Lp~i~i~d~d------------- 297 (877)
T COG0525 238 -------LVGKEVILPLVGREIPIIADEYVDPEFGTGAVKITPAHDFNDYEVGKRHNLPLINIIDED------------- 297 (877)
T ss_pred -------hcCCEEecCCCCCeeeeecCcccCCcCCCceEEecCCCCchhhhhhhcCCCCceEEECCC-------------
Confidence 589999999999999999999999999999999999999999999999999999999986
Q ss_pred cceEEcccCcccccccCCCCHHHHHHHHHHHHHHcCCCcce---------------------------------------
Q 002217 445 EGLIVNSSNLISGLDINGLSCQEATSKVIEWAEKTGNGKKK--------------------------------------- 485 (952)
Q Consensus 445 ~g~l~~~~~~~~~~~~~gl~~~~a~~~ii~~l~~~~~~~~~--------------------------------------- 485 (952)
|.|.... .+.|.||+..+|+++|++.|++.|+..+.
T Consensus 298 -G~in~~~----~~~~~Gl~r~eAR~kIv~~L~~~GlLvk~e~~~h~V~~~~R~g~~IEp~ls~QWfVk~~~la~~~l~~ 372 (877)
T COG0525 298 -GRINEEA----AGEFAGLDRFEARKKIVEDLEEQGLLVKIEPHKHSVGHCERCGTPIEPLLSKQWFVKVLELAKKALEA 372 (877)
T ss_pred -CeeccCC----ccccCCCcHHHHHHHHHHHHHhCCCeEeeeeccccCccccCCCceeeeeecceeeEEhHhhHHHHHHH
Confidence 3333111 13599999999999999999999974221
Q ss_pred -----ecc--------------cCCceeecccCCCCcccCceEeCCCCceeecCCCCcCCCCCcccccCCCCCCCCCCcc
Q 002217 486 -----VNY--------------KLRDWLFARQRYWGEPIPVVFLDGTGETVPLHEAELPLTLPELDDFTPTGTGEPPLSK 546 (952)
Q Consensus 486 -----~~~--------------~l~DW~ISRQR~WG~PIPv~~~~~~~~~~~~~~~~l~v~lp~~~~~~~~G~~~~~l~~ 546 (952)
+++ +++||||||||+||||||+|||++||.+++..+ .|.....
T Consensus 373 ~~~g~i~f~P~~~~~~~~~W~~~i~DWcISRQlwwGh~IPvWy~~~~g~v~v~~~--~~~~~~~---------------- 434 (877)
T COG0525 373 VKDGKIKFVPERMEKRYEDWMENIRDWCISRQLWWGHRIPVWYCKECGNVVVAEE--EPEDPAA---------------- 434 (877)
T ss_pred HhcCCceEecHHHHHHHHHHHhhCcCceeeeeeecCcccceEEecCCCcEEeCCc--cccchhh----------------
Confidence 111 478999999999999999999998887765433 2221100
Q ss_pred ccccccccccCCCCCccccCCCcccccccc-chhheecCCCCchhHhhhhhhhcCCCceeEecCchhhHHHHHHHHHHHH
Q 002217 547 AVSWVQTTEHSSGKPARRETSTMPQWAGSC-WYYLRFMDPKNSKELVDKTKERYWSPVDVYVGGAEHAVLHLLYARFWHK 625 (952)
Q Consensus 547 ~~~w~~~~~~~~g~~~~re~d~lD~WfdSs-wy~~~~~~p~~~~~~~~~~~~~~w~PvDlyv~G~D~~~~HLly~Rfw~~ 625 (952)
...|+. ..+++++|||||||+|| |++...+||..+..+ +.+||+|++++|.|++ |||..
T Consensus 435 -----~~~~~~--~~~~qd~DVLDTWFSS~LwPfstlgWp~~t~~l------~~fyPt~llvtG~DII-------ffWva 494 (877)
T COG0525 435 -----AEKCPK--EELEQDEDVLDTWFSSSLWPFSTLGWPEETPDL------KKFYPTDLLVTGHDII-------FFWVA 494 (877)
T ss_pred -----hccCch--hcccCCcchhhhhhhcccccccccCCCCcchHH------HhcCCCccccccchhh-------HHHHH
Confidence 112222 45789999999999998 999999999875433 3368999999999997 99987
Q ss_pred HHHHhcC-cCCCCcchhhhhhceeccccceeEEecCCCccccCCCCCcccccccccCccccccccCCceeeccCcchhhc
Q 002217 626 VLYDIGV-VSTKEPFKCVINQGIILGEMQYMVCKDVDGSYISADSTDTLGEYEQESIPEEKVMKSGDFFVMKDNPNIRLI 704 (952)
Q Consensus 626 ~L~~~~~-~~~~~PFk~l~~~G~vl~~~~y~~~~d~~g~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~vl~~~~~~~v~ 704 (952)
.|..+++ +.++.||+.|+.||||.|+
T Consensus 495 rmi~~~~~~~~~~PFk~V~ihGLVrDe----------------------------------------------------- 521 (877)
T COG0525 495 RMIMRGLHLTGEVPFKDVYIHGLVRDE----------------------------------------------------- 521 (877)
T ss_pred HHHHHHHHhcCCCCccEEEEeeeEEcC-----------------------------------------------------
Confidence 7766665 4568999999999999765
Q ss_pred ccccccccCCCCCCChhhHHhhhCchhhhhhhhhcCCCCCCCCCChhhHHHHHHHHHHHHH---HHhccCCCCCCCCCCc
Q 002217 705 ARAHKMSKSRGNVVNPDDVVTEYGADSLRLYEMFMGPFRDSKTWNTSGIEGVHRFLGRMWR---LIVGSSLPDGTFKGGT 781 (952)
Q Consensus 705 ~~g~KMSKSkGNvV~P~eii~~YGaDalRl~ll~~~~~~~~~~~s~~~i~~~~r~l~~l~~---~~~~~~~~~~~~~~~~ 781 (952)
+|+|||||+||||||.++|++|||||||+|+++.+..++|++|+++.+++.+||++++|| |++.+. .+..+.+..
T Consensus 522 -~G~KMSKS~GNvIDP~d~I~~yGaDAlRf~la~~~~~G~Di~~~~~~~~~~rnF~nKlWNa~Rfv~~~~-~~~~~~~~~ 599 (877)
T COG0525 522 -QGRKMSKSKGNVIDPLDVIDKYGADALRFTLASLASPGRDINFDEKRVEGYRNFLNKLWNATRFVLMNL-DDLGPDDLD 599 (877)
T ss_pred -CCCCCcccCCCcCCHHHHHHHhChHHHHHHHHhccCCCcccCcCHHHHHHHHHHHHHHHhHHHHHHhcc-cccCccccc
Confidence 379999999999999999999999999999999989999999999999999999999996 444321 111111111
Q ss_pred cCCCCCChHHHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHH-HHhcccc-------------------hhHHHHHHHH
Q 002217 782 VVNDEEPTLEQLCTLHKCIAKVTEEIEGTRFNTGISAMMEFIN-AAYKWEK-------------------HPRKIIEPFI 841 (952)
Q Consensus 782 ~~~~~~~d~~~l~~l~~~i~~v~~~~e~~~f~~ai~~l~~f~~-~~~~~~~-------------------~~~~vL~~l~ 841 (952)
.......|+|++++++++++.|+++|++|+|+.|.+++++|++ +.+.||. .+..+|+.++
T Consensus 600 ~~~~~~~drWIls~l~~~v~~v~~~ld~y~f~~a~~~ly~F~W~~fcD~YlEl~K~~l~~~~~~~~~a~~tL~~vl~~~l 679 (877)
T COG0525 600 LLALSLADRWILSRLNETVKEVTEALDNYRFDEAARALYEFIWNDFCDWYLELAKPRLYGGEEEKRAARATLYYVLDTLL 679 (877)
T ss_pred ccccchHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHhHHHHHHHHHHHhhhhhcCcHHHHHHHHHHHHHHHHHHH
Confidence 1122467899999999999999999999999999999999995 4555541 1347899999
Q ss_pred HHhCCcchhHHHHHHHHcCCCCCccccCCCCCCccccCC
Q 002217 842 LLLAPYAPHMSEELWFRLGHSNSLAYESFPKANPDYLKD 880 (952)
Q Consensus 842 ~LLaPf~P~iaEElw~~L~~~~sV~~~~WP~~~~~~l~~ 880 (952)
+||||||||+|||||+.+...+|||.+.||.+++..+++
T Consensus 680 rLLhPfmPfiTEei~q~l~~~~si~~~~~P~~~~~~~d~ 718 (877)
T COG0525 680 RLLHPFMPFITEEIWQKLPGTESIHLASWPEVDEELIDE 718 (877)
T ss_pred HHhCCCCccchHHHHHhcCCCCeEEeccCCCcchhhccH
Confidence 999999999999999999887899999999998766654
No 8
>PRK06039 ileS isoleucyl-tRNA synthetase; Reviewed
Probab=100.00 E-value=1.6e-130 Score=1228.54 Aligned_cols=666 Identities=26% Similarity=0.422 Sum_probs=546.3
Q ss_pred cccCCChhhhhHHHHHHHHHcCCCCCCCCCCCCCCcEEEEcCCCCCCCCCCCCchhHHHHHHHHHHHHHHHcCCcccccc
Q 002217 60 VKRAYPFHEIEPKWQSYWENNRTFRTPDEIDTSKPKFYVLDMFPYPSGAGLHVGHPLGYTATDILARLKRMQGYNVLHPM 139 (952)
Q Consensus 60 ~~~~y~~~~iE~k~~~~W~~~~~f~~~~~~~~~k~kf~i~~~~Pypng~~lHiGH~~~~~~~Di~~Ry~r~~G~~V~~~~ 139 (952)
+++.|||.++|++||++|+++++|++..+.+.++++|++++||||+||. |||||+++++++|+++||+||+||+|++++
T Consensus 7 ~~~~~~~~~iE~~~~~~W~~~~~f~~~~~~~~~~~~f~i~~~PPy~nG~-lH~GH~l~~t~kD~i~Ry~rm~G~~v~~~~ 85 (975)
T PRK06039 7 VDSQPDFPALEEEVLKFWKENDIFEKSIENREGGPEFVFYDGPPTANGL-PHYGHLLTRTIKDVVPRYKTMKGYKVERRA 85 (975)
T ss_pred cCCCCCHHHHHHHHHHHHHHCCCcccCccccCCCCCEEEeCCCCCCCCC-ccHhhhHhhHHHHHHHHHHHhCCCcccCcC
Confidence 5678999999999999999999999765445688999999999999998 999999999999999999999999999999
Q ss_pred cccccChHHHHHHHH-hCCC----------------chHHHHHHHHHHHHHHHHcCCccccCCcccCCChhHHHHHHHHH
Q 002217 140 GWDAFGLPAEQYAIE-TGTH----------------PKITTLRNINRFRTQLKSLGFSYDWNREISTIEPAYYKWTQWIF 202 (952)
Q Consensus 140 G~D~~Glpie~~a~~-~g~~----------------~~~~~~~~~~~~~~~l~~lgi~~Dw~~~~~T~~~~~~~~v~~~f 202 (952)
||||||||||.+|++ .|++ |++++.++++.|++||++||+++||+++|.||||.|+++++|+|
T Consensus 86 GwD~~GlPie~~vek~l~~~~~~~i~~~g~~~f~~~c~~~~~~~~~~~~~~~~rlG~~~Dw~~~y~T~d~~y~~~v~~~F 165 (975)
T PRK06039 86 GWDTHGLPVELEVEKELGISGKKDIEEYGIEKFNEKCRESVLRYTDEWEEYTERLGRWVDFDNPYKTLDNEYMESVWWAL 165 (975)
T ss_pred CcCCCccHHHHHHHHHhCcccccchhhcCHHHHHHHHHHHHHHHHHHHHHHHHHhCceeecCCCcCcCCHHHHHHHHHHH
Confidence 999999999999987 4754 67899999999999999999999999999999999999999999
Q ss_pred HHHHHCCceeeeccccccCCCCCcccCchhhccCccccCCCCeEEeeccccchhhhhhhhHhhccCCCCCCchHHHHHHH
Q 002217 203 LQLLKRGLAYQAEVPVNWCPALGTVLANEEVVDGVSERGGHPVIRKPMRQWMLKITEYADRLLDDLDDLDWPESVKEMQR 282 (952)
Q Consensus 203 ~~L~~kGliy~~~~~v~wc~~~~t~ls~~Ev~~~~~~~~~~~~~~~~~~~~~~~i~~y~~~l~~~l~~~~~p~~~~~~~~ 282 (952)
.+|+++||||++.++|+|||.|+|+||++||+++++++++
T Consensus 166 ~~l~~kGliyr~~~~v~wcp~~~T~Ls~~Ev~~~y~~~~~---------------------------------------- 205 (975)
T PRK06039 166 KQLYDKGLLYKGYRVVPYCPRCETPLSNHEVAQGYKDVKD---------------------------------------- 205 (975)
T ss_pred HHHHHCCCEEecceeeeecCCCCCCccHHHHhhcccccCC----------------------------------------
Confidence 9999999999999999999999999999999976665543
Q ss_pred hhhccCCCceEEEEEecCCCCccCcEEEEecCCcchhccccEEEECCCCccchhhccccc----hHHHHHHHHHHhccch
Q 002217 283 NWIGRSEGAEMDFRVLDSDGQERDIKITVYTTRPDTIFGATYLVVAPEHPLLSSLVSTTQ----SQNIEEYKNLASRKSD 358 (952)
Q Consensus 283 ~~i~~s~~~~v~f~~~~~~~~~~~~~i~i~TT~P~Tl~g~~~v~v~p~~~y~~~~~~~~~----~~~~~~y~~~~~~~~~ 358 (952)
..++|+|++.+. .+.+++||||||||||||+||||||+++|+.+...++. ...++.+.. ..
T Consensus 206 ------~~~~v~f~l~~~----~~~~l~i~TTrP~Tl~~n~avaV~P~~~Y~~~~~~~~~yi~a~~~~~~~~~-----~~ 270 (975)
T PRK06039 206 ------PSVYVKFKLKGE----ENEYLLAWTTTPWTLPSNLALAVHPDIDYVKVEGGGEVYILAEALLEKVLK-----ED 270 (975)
T ss_pred ------ceEEEEEEecCC----CCCEEEEEECCccccccceEEEECCCCceEEEecCCeEEEEhHHHHHHHhh-----cc
Confidence 345899998532 24799999999999999999999999999876543322 122222221 11
Q ss_pred hhHhhhhhcccccccceEEecCCCC-----CcccEEecCcccCCCCCCceEecCCCChhhHHHHHHcCCceeeeecCCCC
Q 002217 359 LERTELQKEKTGVFSGCYARNPASG-----EAIPIWVADYVLGSYGTGAIMAVPAHDTRDHEFALKFDISIHSVVMPDDE 433 (952)
Q Consensus 359 ~~~~~~~~~~~~~l~g~~~~~P~~~-----~~~pv~~~~~V~~~~GTG~V~~~Pah~~~D~~~~~~~~L~i~~vv~~~~~ 433 (952)
. ..+...+|..|.|++|.||++. +.+||+.++||++++|||+||+|||||++||++|++||||++++|+++
T Consensus 271 ~--~~~~~~~G~~L~G~~~~~P~~~~~~~~~~~pii~~~~V~~~~GTG~V~~aPahg~~D~~~~~~~~l~~~~~id~~-- 346 (975)
T PRK06039 271 Y--EVVETFKGSELEGLEYEPPFPYFADEKNAFRVVLADFVTTEDGTGIVHIAPAFGEDDFEVGKKYGLPVVCPVDDD-- 346 (975)
T ss_pred c--EEEeeecCccccCCEEECCcccccCCcceeEEEecCccCCCCCccceeeCCCCChHHHHHHHHcCCCccceeCCC--
Confidence 1 1233456678999999999973 479999999999999999999999999999999999999999999875
Q ss_pred CCccccccccccceEEcccCcccccccCCCCHHHHHHHHHHHHHHcCCCcce----------------------------
Q 002217 434 SSSQSEKAYTGEGLIVNSSNLISGLDINGLSCQEATSKVIEWAEKTGNGKKK---------------------------- 485 (952)
Q Consensus 434 ~~~~~~~~y~~~g~l~~~~~~~~~~~~~gl~~~~a~~~ii~~l~~~~~~~~~---------------------------- 485 (952)
|.+.+.. ..+.|+.+++|+++|++.|++.|...+.
T Consensus 347 ------------G~~~~~~-----~~~~G~~v~eA~~~Ii~~L~~~g~l~~~~~~~h~~p~c~R~g~pv~~~~~~qWFi~ 409 (975)
T PRK06039 347 ------------GRFTEEV-----PDYAGKFVKDADKEIIRDLKERGLLFKAETYEHSYPHCWRCDTPLIYYATESWFIR 409 (975)
T ss_pred ------------ceEcCCC-----ccccCCCHHHhhHHHHHHHHhCCCEeeeeeecCCCCEeCCCCCEEEEEecCeeeEe
Confidence 4443321 3588999999999999999998875221
Q ss_pred --------------ecc---------------cCCceeecccCCCCcccCceEeCCCCceeecC-CCCcCCCCCcccccC
Q 002217 486 --------------VNY---------------KLRDWLFARQRYWGEPIPVVFLDGTGETVPLH-EAELPLTLPELDDFT 535 (952)
Q Consensus 486 --------------~~~---------------~l~DW~ISRQR~WG~PIPv~~~~~~~~~~~~~-~~~l~v~lp~~~~~~ 535 (952)
++| +++||||||||+||+|||+|+|++||...++. .++|. .
T Consensus 410 ~~~~k~~ll~~~~~i~~~P~~~~~~~~~~wl~~l~DW~ISRqr~WG~PIPiw~~~~~g~~~v~~~~~el~---------~ 480 (975)
T PRK06039 410 VTKIKDRMLELNQKINWYPEHIKDGRFGKWLENARDWNISRNRYWGTPLPIWRCEDCGRIDVIGSIEELE---------E 480 (975)
T ss_pred cHHHHHHHHHhhCCeEEECcccchhhHHHHHhcCccceeeeccccCCcceEEEecCCCeEEEeccHHHHH---------H
Confidence 111 57899999999999999999999887655442 12221 0
Q ss_pred CCCCCCCCCccccccc---cccccCCCCCccccCCCcccccccc-chhheecCCCCchhHhhhhhhhcCCCceeEecCch
Q 002217 536 PTGTGEPPLSKAVSWV---QTTEHSSGKPARRETSTMPQWAGSC-WYYLRFMDPKNSKELVDKTKERYWSPVDVYVGGAE 611 (952)
Q Consensus 536 ~~G~~~~~l~~~~~w~---~~~~~~~g~~~~re~d~lD~WfdSs-wy~~~~~~p~~~~~~~~~~~~~~w~PvDlyv~G~D 611 (952)
..|....+..-+.+|+ ...|+ ||+.++|++|||||||||+ ||++.+++|.++.+.| ++|||+|++++|+|
T Consensus 481 ~~g~~~~~~~l~~~~~d~~~~~~~-~~~~~~r~~dVlDvWFdSg~~p~a~~~~p~~~~~~f-----~~~~Pad~~~~G~D 554 (975)
T PRK06039 481 LFGEDVEPIDLHRPYVDEVTLPCP-DGGTMRRVPDVIDVWFDSGSMPYAQLHYPFENKEWF-----EKHFPADFIVEGID 554 (975)
T ss_pred HhCCCcchhhhcccccccccccCC-CCcceEeccccccceeecCCccHHHhCCcccChhhh-----hccCCceEEEechh
Confidence 1121112222334454 34565 4788999999999999997 7999999998654333 45899999999999
Q ss_pred hhHHHHHHHHHHHHHHHHhcC-cCCCCcchhhhhhceeccccceeEEecCCCccccCCCCCcccccccccCccccccccC
Q 002217 612 HAVLHLLYARFWHKVLYDIGV-VSTKEPFKCVINQGIILGEMQYMVCKDVDGSYISADSTDTLGEYEQESIPEEKVMKSG 690 (952)
Q Consensus 612 ~~~~HLly~Rfw~~~L~~~~~-~~~~~PFk~l~~~G~vl~~~~y~~~~d~~g~~~~~~~~~~~~~~~~~~~~~~~v~~~~ 690 (952)
|+ |||+++|+.+++ +.+.+||+++++||||+++
T Consensus 555 i~-------r~Wf~~l~~~~~~~~~~~pfk~v~~hG~Vld~--------------------------------------- 588 (975)
T PRK06039 555 QT-------RGWFYTLLALSTALFDRPPYKNVLVHGHVLDE--------------------------------------- 588 (975)
T ss_pred hH-------hhHHHHHHHHHHHhcCCCcccEEEEeeeEECC---------------------------------------
Confidence 96 999999888765 4567899999999999853
Q ss_pred CceeeccCcchhhcccccccccCCCCCCChhhHHhhhCchhhhhhhhhcCCCCCCCCCChhh-HHHHHHHHHHHHHHH--
Q 002217 691 DFFVMKDNPNIRLIARAHKMSKSRGNVVNPDDVVTEYGADSLRLYEMFMGPFRDSKTWNTSG-IEGVHRFLGRMWRLI-- 767 (952)
Q Consensus 691 ~~~vl~~~~~~~v~~~g~KMSKSkGNvV~P~eii~~YGaDalRl~ll~~~~~~~~~~~s~~~-i~~~~r~l~~l~~~~-- 767 (952)
+|+|||||+||+|+|.++|++||||++|||++++++.+++.+|+++. ++.+.++++++||.+
T Consensus 589 ---------------~G~KMSKSlGNvIdP~dli~~yGaDalR~~lls~~~~~~D~~fs~~~~~~~~~~~l~kl~N~~~f 653 (975)
T PRK06039 589 ---------------DGQKMSKSLGNYVDPFEVFDKYGADALRWYLLSSSAPWEDLRFSEDGVREVVRKFLLTLWNVYSF 653 (975)
T ss_pred ---------------CCCCcCCCCCCcCCHHHHHHHhChHHHHHHHHhCCCCCCCceechhHHHHHHHHHHHHHHHHHHH
Confidence 37999999999999999999999999999999998889999999999 777788888888754
Q ss_pred -hc-cCCCCCCCCCC--c--cCCCCCChHHHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHhcccc----------
Q 002217 768 -VG-SSLPDGTFKGG--T--VVNDEEPTLEQLCTLHKCIAKVTEEIEGTRFNTGISAMMEFINAAYKWEK---------- 831 (952)
Q Consensus 768 -~~-~~~~~~~~~~~--~--~~~~~~~d~~~l~~l~~~i~~v~~~~e~~~f~~ai~~l~~f~~~~~~~~~---------- 831 (952)
.. ..+. ++... . .......|+|++++++.++++++++|++|+|++|++.+++|++.+++||.
T Consensus 654 ~~~y~~~~--~~~~~~~~~~~~~~~~~D~wils~l~~li~~v~~a~e~y~~~~A~~~l~~f~~~lsn~Yi~~~k~r~w~~ 731 (975)
T PRK06039 654 FVLYANLD--GFDYPPAEDEVDSLNELDRWILSRLNSLVKEVTEALDNYDITKAARAIRDFVDDLSNWYIRRSRRRFWKE 731 (975)
T ss_pred HHHHhhhc--cCCccccccccccCCHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHHHHHHhhhhhccC
Confidence 21 1111 11111 0 01123458899999999999999999999999999999999987766541
Q ss_pred -----------hhHHHHHHHHHHhCCcchhHHHHHHHHcC---CCCCccccCCCCCCccccCC
Q 002217 832 -----------HPRKIIEPFILLLAPYAPHMSEELWFRLG---HSNSLAYESFPKANPDYLKD 880 (952)
Q Consensus 832 -----------~~~~vL~~l~~LLaPf~P~iaEElw~~L~---~~~sV~~~~WP~~~~~~l~~ 880 (952)
.++++|+.+++||||||||+|||||+.|+ ..+|||++.||++++.++++
T Consensus 732 ~~~~~~~~a~~~L~~~L~~l~~lLaPf~Pf~aEei~~~L~~~~~~~sv~~~~~P~~~~~~~d~ 794 (975)
T PRK06039 732 EDDPDKLAAYATLYTVLETLSRLAAPFTPFIAEEIYQNLTREDAPESVHLADWPEVDESLIDE 794 (975)
T ss_pred CCcHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHhccccCCCCeeEecCCCCCccccCCH
Confidence 13468999999999999999999999997 45799999999998776653
No 9
>PRK05743 ileS isoleucyl-tRNA synthetase; Reviewed
Probab=100.00 E-value=9.6e-129 Score=1203.66 Aligned_cols=667 Identities=26% Similarity=0.381 Sum_probs=529.6
Q ss_pred cccccCCChhhhhHHHHHHHHHcCCCCCCCCCCCCCCcEEEEcCCCCCCCCCCCCchhHHHHHHHHHHHHHHHcCCcccc
Q 002217 58 QVVKRAYPFHEIEPKWQSYWENNRTFRTPDEIDTSKPKFYVLDMFPYPSGAGLHVGHPLGYTATDILARLKRMQGYNVLH 137 (952)
Q Consensus 58 ~~~~~~y~~~~iE~k~~~~W~~~~~f~~~~~~~~~k~kf~i~~~~Pypng~~lHiGH~~~~~~~Di~~Ry~r~~G~~V~~ 137 (952)
+.++.++|+.++|++||++|+++++|++..+.+.++++|+|++||||+||. |||||++|++++|+++||+||+||+|+|
T Consensus 13 t~f~m~~~l~~~E~~~~~~W~~~~~~~~~~~~~~~~~~f~i~~~pPyanG~-lHiGHa~~~~~~Dii~Ry~rm~G~~v~~ 91 (912)
T PRK05743 13 TDFPMRANLPKREPEILKRWEENDLYQKIREANKGKPKFILHDGPPYANGD-IHIGHALNKILKDIIVKSKTMSGFDAPY 91 (912)
T ss_pred CCCCCCCChHHhhHHHHHHHHHCCCccccchhcCCCCcEEEeCCCCCCCCC-ccHHHHHHHHHHHHHHHHHHccCCcccC
Confidence 346677999999999999999999999764445678999999999999998 9999999999999999999999999999
Q ss_pred cccccccChHHHHHHHHh------CCCch-------HHHHHHHHHHHHHHHHcCCccccCCcccCCChhHHHHHHHHHHH
Q 002217 138 PMGWDAFGLPAEQYAIET------GTHPK-------ITTLRNINRFRTQLKSLGFSYDWNREISTIEPAYYKWTQWIFLQ 204 (952)
Q Consensus 138 ~~G~D~~Glpie~~a~~~------g~~~~-------~~~~~~~~~~~~~l~~lgi~~Dw~~~~~T~~~~~~~~v~~~f~~ 204 (952)
++||||||+|||.+|++. ++++. +++.++++.|++||++||+++||+++|.|+||.|.++++|+|.+
T Consensus 92 ~~G~D~~Glpie~~~ek~l~~~~~~~~~~~f~~~c~~~~~~~~~~~~~~~~~lG~~~dw~~~~~T~~~~~~~~v~~~f~~ 171 (912)
T PRK05743 92 VPGWDCHGLPIELKVEKKLGKKGKKLSAAEFRKKCREYALEQVDIQREDFKRLGVLGDWDNPYLTMDFKYEANIIRALGK 171 (912)
T ss_pred CCCcCCCccHhHHHHHHHcCCccccCCHHHHHHHHHHHHHHHHHHHHHHHHHhCCcccCCCCcCCCCHHHHHHHHHHHHH
Confidence 999999999999999874 44443 58899999999999999999999999999999999999999999
Q ss_pred HHHCCceeeeccccccCCCCCcccCchhhccCccccCCCCeEEeeccccchhhhhhhhHhhccCCCCCCchHHHHHHHhh
Q 002217 205 LLKRGLAYQAEVPVNWCPALGTVLANEEVVDGVSERGGHPVIRKPMRQWMLKITEYADRLLDDLDDLDWPESVKEMQRNW 284 (952)
Q Consensus 205 L~~kGliy~~~~~v~wc~~~~t~ls~~Ev~~~~~~~~~~~~~~~~~~~~~~~i~~y~~~l~~~l~~~~~p~~~~~~~~~~ 284 (952)
|+++|+||++.++|+|||.|+|+||++||++.. .
T Consensus 172 l~~~Gliy~~~~~v~w~p~~~TaLad~Evey~~-~--------------------------------------------- 205 (912)
T PRK05743 172 MAKKGYLYKGLKPVYWCPDCGSALAEAEVEYHD-K--------------------------------------------- 205 (912)
T ss_pred HHHCCCEEecceeEecCCCcCCCchhhHhhccc-c---------------------------------------------
Confidence 999999999999999999999999999998531 1
Q ss_pred hccCCCceEEEEEecCCC--CccCcEEEEecCCcchhccccEEEECCCCccchhhccccchHHHHHHHHHHhccchhhHh
Q 002217 285 IGRSEGAEMDFRVLDSDG--QERDIKITVYTTRPDTIFGATYLVVAPEHPLLSSLVSTTQSQNIEEYKNLASRKSDLERT 362 (952)
Q Consensus 285 i~~s~~~~v~f~~~~~~~--~~~~~~i~i~TT~P~Tl~g~~~v~v~p~~~y~~~~~~~~~~~~~~~y~~~~~~~~~~~~~ 362 (952)
+|.+++|+|++.+..- ...+.+++||||||||||||+||+|||+++|+.+.+.++.-...+++.+.......++..
T Consensus 206 --~s~~~yv~f~l~~~~~~~~~~~~~l~i~TTrP~Tl~~n~aiav~p~~~Y~~~~~~~~~~i~a~~~~~~~~~~~~~~~~ 283 (912)
T PRK05743 206 --TSPSIYVAFPVVDGKLAAAFKDASLVIWTTTPWTLPANQAIAVHPEFDYVLVEVEGEKLIVAKDLVESVLERFGWEDY 283 (912)
T ss_pred --cCceEEEEEEecCcchhcccCCCEEEEEeCCChhhhhCeEEEECCCCeeEEEEcCCCEEEEeHHhHHHHHHhhCCcce
Confidence 3456789999854210 002368999999999999999999999999986554322111112222222111111111
Q ss_pred -hhhhcccccccceEEecCCCCCcccEEecCcccCCCCCCceEecCCCChhhHHHHHHcCCceeeeecCCCCCCcccccc
Q 002217 363 -ELQKEKTGVFSGCYARNPASGEAIPIWVADYVLGSYGTGAIMAVPAHDTRDHEFALKFDISIHSVVMPDDESSSQSEKA 441 (952)
Q Consensus 363 -~~~~~~~~~l~g~~~~~P~~~~~~pv~~~~~V~~~~GTG~V~~~Pah~~~D~~~~~~~~L~i~~vv~~~~~~~~~~~~~ 441 (952)
.+...+|..|.|+++.||++++++||+.++||++++|||+||+|||||++||+++++||||++++|+++
T Consensus 284 ~~~~~~~G~~l~g~~~~~Pl~~~~~pvi~~~~V~~~~GTG~Vh~aPahg~~Dy~~~~~~~L~~~~~vd~~---------- 353 (912)
T PRK05743 284 EVLATFKGKELEGLVAQHPFYDRDSPVILGDHVTLDAGTGLVHTAPGHGEDDYVVGQKYGLEVLNPVDDD---------- 353 (912)
T ss_pred EEEEEechHhhcCCEEECCCCCCeeeEeCCCccCCCCCcCeEEeCCCCCHHHHHHHHHcCCCcccccCCC----------
Confidence 123345567999999999999999999999999999999999999999999999999999999999865
Q ss_pred ccccceEEcccCcccccccCCCCHHHHHHHHHHHHHHcCCCc----------------ceecc-----------------
Q 002217 442 YTGEGLIVNSSNLISGLDINGLSCQEATSKVIEWAEKTGNGK----------------KKVNY----------------- 488 (952)
Q Consensus 442 y~~~g~l~~~~~~~~~~~~~gl~~~~a~~~ii~~l~~~~~~~----------------~~~~~----------------- 488 (952)
|.++++. ..+.|+.+.+|+++|++.|++.|... ..+.+
T Consensus 354 ----G~~~~~~-----~~~~Gl~v~ea~~~Ii~~L~~~g~l~~~~~~~h~yp~~wR~~~pvi~r~~~QWFi~~~~~~~k~ 424 (912)
T PRK05743 354 ----GRYTEEA-----PLFAGLFVFKANPKIIEKLEEKGALLKEEKITHSYPHCWRTKKPVIFRATPQWFISMDKKGLRE 424 (912)
T ss_pred ----ceEecCC-----cccCCcCHHHhHHHHHHHHHhCCCeeeeeeeeccCCeecCCCCEEEEEecCcccEeCChHHHHH
Confidence 4444332 24889999999999999999988741 11111
Q ss_pred -------------------------cCCceeecccCCCCcccCceEeCCCCceeecCCCCcCCCCCcccccCCCCCCCCC
Q 002217 489 -------------------------KLRDWLFARQRYWGEPIPVVFLDGTGETVPLHEAELPLTLPELDDFTPTGTGEPP 543 (952)
Q Consensus 489 -------------------------~l~DW~ISRQR~WG~PIPv~~~~~~~~~~~~~~~~l~v~lp~~~~~~~~G~~~~~ 543 (952)
+++||||||||+||+|||+|||++||.++. ++ +++..+++ .+...|.
T Consensus 425 ~~l~~~~~v~~~P~~~~~r~~~~i~~~~DWcISRQR~WG~PIP~~~~~~~g~~~~-~~-~~~~~i~~--~~~~~g~---- 496 (912)
T PRK05743 425 QALKAIEKVKWIPAWGKNRIESMVENRPDWCISRQRTWGVPIPIFYHKETGELHP-TP-ELIEHVAK--LFEKEGI---- 496 (912)
T ss_pred HHHHHHcccEEEChHHHHHHHHHHhcCcCccccccceeCceEEEEEECCCCcEee-cH-HHHHHHHH--HHHhhCC----
Confidence 258999999999999999999998886543 22 22221111 1122232
Q ss_pred Cccccccccc----cccCCCCCccccCCCcccccccc--chhheecCCCCchhHhhhhhhhcCCCceeEecCchhhHHHH
Q 002217 544 LSKAVSWVQT----TEHSSGKPARRETSTMPQWAGSC--WYYLRFMDPKNSKELVDKTKERYWSPVDVYVGGAEHAVLHL 617 (952)
Q Consensus 544 l~~~~~w~~~----~~~~~g~~~~re~d~lD~WfdSs--wy~~~~~~p~~~~~~~~~~~~~~w~PvDlyv~G~D~~~~HL 617 (952)
..|.+. .||.|+..+.|++|||||||||+ |+++... ...+|||+|+|++|+||+
T Consensus 497 ----~~W~~~~~~~~~~~~~~~~~~~~DvlDvWfdSg~s~~~~~~~------------~~~~~~P~Dl~~~G~Di~---- 556 (912)
T PRK05743 497 ----DAWFELDAKELLPDEADEYEKETDILDVWFDSGSSHAAVLEQ------------RPELGYPADLYLEGSDQH---- 556 (912)
T ss_pred ----ccccccCHHHhcCCcccCEEECCchhhhhhhhCCCHHHHhcC------------ccccCCCceEEEeccccc----
Confidence 334322 35668889999999999999994 6554321 013578999999999996
Q ss_pred HHHHHHHHH-HHHhcCcCCCCcchhhhhhceeccccceeEEecCCCccccCCCCCcccccccccCccccccccCCceeec
Q 002217 618 LYARFWHKV-LYDIGVVSTKEPFKCVINQGIILGEMQYMVCKDVDGSYISADSTDTLGEYEQESIPEEKVMKSGDFFVMK 696 (952)
Q Consensus 618 ly~Rfw~~~-L~~~~~~~~~~PFk~l~~~G~vl~~~~y~~~~d~~g~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~vl~ 696 (952)
|||+++ ++...++.+.+||++|++||||+++
T Consensus 557 ---r~Wf~~~l~~~~~~~g~~P~k~vl~HG~vld~--------------------------------------------- 588 (912)
T PRK05743 557 ---RGWFQSSLLTSVATRGKAPYKQVLTHGFTVDG--------------------------------------------- 588 (912)
T ss_pred ---chHHHHHHHHHHHhcCCCccceeEEeeeEECC---------------------------------------------
Confidence 999654 4444456778999999999999864
Q ss_pred cCcchhhcccccccccCCCCCCChhhHHhhhCchhhhhhhhhcCCCCCCCCCChhhHHHH---HHHHHHHHHHHhccCCC
Q 002217 697 DNPNIRLIARAHKMSKSRGNVVNPDDVVTEYGADSLRLYEMFMGPFRDSKTWNTSGIEGV---HRFLGRMWRLIVGSSLP 773 (952)
Q Consensus 697 ~~~~~~v~~~g~KMSKSkGNvV~P~eii~~YGaDalRl~ll~~~~~~~~~~~s~~~i~~~---~r~l~~l~~~~~~~~~~ 773 (952)
+|+|||||+||||+|.++|++||||+||||+++ +++++|.+|+++.+.++ +|.|.|+++|++++..
T Consensus 589 ---------~G~KMSKSlGNvIdP~~ii~~yGaDalR~~ll~-~~~~~D~~~s~~~l~~~~~~~~kl~N~~rf~~~nl~- 657 (912)
T PRK05743 589 ---------KGRKMSKSLGNVIDPQDVIKKYGADILRLWVAS-TDYSGDVRISDEILKQVAEAYRRIRNTLRFLLGNLN- 657 (912)
T ss_pred ---------CCCCCCCCCCCcCCHHHHHHhcChHHHHHHHHh-cCCCCCeeecHHHHHHHHHHHHHHHHHHHHHHhCcc-
Confidence 379999999999999999999999999999996 77799999999888764 5667777778776532
Q ss_pred CCCCCCCcc--CCCCCChHHHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHH-HHhcccc-------------------
Q 002217 774 DGTFKGGTV--VNDEEPTLEQLCTLHKCIAKVTEEIEGTRFNTGISAMMEFIN-AAYKWEK------------------- 831 (952)
Q Consensus 774 ~~~~~~~~~--~~~~~~d~~~l~~l~~~i~~v~~~~e~~~f~~ai~~l~~f~~-~~~~~~~------------------- 831 (952)
+........ ......|+|+++++++++++++++|++|+|++|++++++|++ ++++||.
T Consensus 658 ~~~~~~~~~~~~~l~~~D~~il~~l~~~~~~v~~~~e~~~f~~a~~~l~~f~~~~ls~~Yie~~K~rly~~~~~~~~r~~ 737 (912)
T PRK05743 658 DFDPAKDAVPYEELLELDRWALHRLAELQEEILEAYENYDFHKVYQKLHNFCSVDLSAFYLDIIKDRLYTDAADSLARRS 737 (912)
T ss_pred CCCcccccCCchhCCHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHhhhhhceeeheeccHhhhcCCCCcHHHHH
Confidence 111100001 112345889999999999999999999999999999999994 6665431
Q ss_pred ---hhHHHHHHHHHHhCCcchhHHHHHHHHcC--CCCCccccCCCCCCccccC
Q 002217 832 ---HPRKIIEPFILLLAPYAPHMSEELWFRLG--HSNSLAYESFPKANPDYLK 879 (952)
Q Consensus 832 ---~~~~vL~~l~~LLaPf~P~iaEElw~~L~--~~~sV~~~~WP~~~~~~l~ 879 (952)
.++.+|+.+++||+|||||+|||||+.|+ ..+||+++.||..++.+.+
T Consensus 738 ~~~vL~~~l~~l~~lLaPi~P~~aEelw~~l~~~~~~sv~~~~wP~~~~~~~~ 790 (912)
T PRK05743 738 AQTALYHILEALVRWLAPILSFTAEEIWQYLPGEREESVFLEEWPEVPELADD 790 (912)
T ss_pred HHHHHHHHHHHHHHHHhhhhHHHHHHHHHhcccCCCCceEEecCCCCccccCC
Confidence 13468999999999999999999999994 5579999999998776543
No 10
>PRK13804 ileS isoleucyl-tRNA synthetase; Provisional
Probab=100.00 E-value=1.7e-126 Score=1185.41 Aligned_cols=679 Identities=25% Similarity=0.360 Sum_probs=521.4
Q ss_pred cccccCCChhhhhHHHHHHHHHcCCCCCCCCCCCCCCcEEEEcCCCCCCCCCCCCchhHHHHHHHHHHHHHHHcCCcccc
Q 002217 58 QVVKRAYPFHEIEPKWQSYWENNRTFRTPDEIDTSKPKFYVLDMFPYPSGAGLHVGHPLGYTATDILARLKRMQGYNVLH 137 (952)
Q Consensus 58 ~~~~~~y~~~~iE~k~~~~W~~~~~f~~~~~~~~~k~kf~i~~~~Pypng~~lHiGH~~~~~~~Di~~Ry~r~~G~~V~~ 137 (952)
+.++.++|+.++|++||++|+++++|++..+.+.++++|++++||||+||. |||||++|++++|+++||+||+||+|+|
T Consensus 18 t~f~m~~~~~~~E~~~~~~W~~~~~y~~~~~~~~~~~~f~l~dgPPyanG~-lHiGHaln~~lkDii~Ry~rm~G~~v~~ 96 (961)
T PRK13804 18 TAFPMRAGLPQKEPEIQARWEEIDLYKKLREQAKGRPKFVLHDGPPYANGN-IHIGHALNKILKDVIVRSKQMLGFDANY 96 (961)
T ss_pred CCCCCCCChHHhHHHHHHHHHHCCCccccccccCCCCcEEEeCCCCCCCCC-ccHHHHHHHHHHHHHHHHHHhcCCcccC
Confidence 356778999999999999999999999875445688999999999999998 9999999999999999999999999999
Q ss_pred cccccccChHHHHHHHHh----CCC------------chHHHHHHHHHHHHHHHHcCCccccCCcccCCChhHHHHHHHH
Q 002217 138 PMGWDAFGLPAEQYAIET----GTH------------PKITTLRNINRFRTQLKSLGFSYDWNREISTIEPAYYKWTQWI 201 (952)
Q Consensus 138 ~~G~D~~Glpie~~a~~~----g~~------------~~~~~~~~~~~~~~~l~~lgi~~Dw~~~~~T~~~~~~~~v~~~ 201 (952)
++||||||||||+++++. |.. |++++.++++.|++||++||++.||+++|.||||.|+++++|+
T Consensus 97 ~pGwD~hGlPiE~~vek~~~~~~~~~~~~~~~~f~~~c~~~a~~~i~~~~~~~~rlG~~~Dw~~~y~T~d~~y~~~~~~~ 176 (961)
T PRK13804 97 VPGWDCHGLPIEWKIEEKYRAKGKNKDEVPVAEFRKECREYALSWIDVQREEFKRLGVLGDWDNPYTTMDFHAEARIARE 176 (961)
T ss_pred CCCcCCCCcHHHHHHHHhhhhcCCChHhCCHHHHHHHHHHHHHHHHHHHHHHHHHhCceecCCCCcCcCCHHHHHHHHHH
Confidence 999999999999988664 332 3567888999999999999999999999999999999999999
Q ss_pred HHHHHHCCceeeeccccccCCCCCcccCchhhccCccccCCCCeEEeeccccchhhhhhhhHhhccCCCCCCchHHHHHH
Q 002217 202 FLQLLKRGLAYQAEVPVNWCPALGTVLANEEVVDGVSERGGHPVIRKPMRQWMLKITEYADRLLDDLDDLDWPESVKEMQ 281 (952)
Q Consensus 202 f~~L~~kGliy~~~~~v~wc~~~~t~ls~~Ev~~~~~~~~~~~~~~~~~~~~~~~i~~y~~~l~~~l~~~~~p~~~~~~~ 281 (952)
|.+|+++||||++.+||+|||.|+|+||++||++. +.
T Consensus 177 F~~l~~kGliyr~~kpV~Wcp~~~TaLa~~Evey~--~~----------------------------------------- 213 (961)
T PRK13804 177 FGKFAAKGQLYRGSKPVMWSVVERTALAEAEIEYH--DI----------------------------------------- 213 (961)
T ss_pred HHHHHHCCCEEeCCcceecCCCCCCCccchhcccc--cc-----------------------------------------
Confidence 99999999999999999999999999999999742 10
Q ss_pred HhhhccCCCceEEEEEecCCCC-ccCcEEEEecCCcchhccccEEEECCCCccchhhcccc---------chH-HHHHHH
Q 002217 282 RNWIGRSEGAEMDFRVLDSDGQ-ERDIKITVYTTRPDTIFGATYLVVAPEHPLLSSLVSTT---------QSQ-NIEEYK 350 (952)
Q Consensus 282 ~~~i~~s~~~~v~f~~~~~~~~-~~~~~i~i~TT~P~Tl~g~~~v~v~p~~~y~~~~~~~~---------~~~-~~~~y~ 350 (952)
+|.+++|+|++.+.+.. ..+.+++||||||||||||+||+|||+++|+.+...++ ... ..+++.
T Consensus 214 -----~s~~~~v~F~~~~~~~~~~~~~~lviwTTtPwTl~an~aiav~p~~~Y~~v~~~~~~~~~~~~~~e~~iva~~~~ 288 (961)
T PRK13804 214 -----ESDTIWVKFPVKDGKGILDSGTYVVIWTTTPWTIPANRAISYSPDIEYGLYEVTGAENDFWAKPGERLVVADALA 288 (961)
T ss_pred -----cCceEEEEEEecCcccccCCCCeEEEEeCCchhhhhCeEEEECCCCceEEEEeccccccccccCCcEEEeHHHHH
Confidence 36788999999542210 02368999999999999999999999999977655321 110 112222
Q ss_pred HHHhccchhhH-hhhhhcccccccceEEecCCCCC-----cccEEecCcccCCCCCCceEecCCCChhhHHHHHHcCC-c
Q 002217 351 NLASRKSDLER-TELQKEKTGVFSGCYARNPASGE-----AIPIWVADYVLGSYGTGAIMAVPAHDTRDHEFALKFDI-S 423 (952)
Q Consensus 351 ~~~~~~~~~~~-~~~~~~~~~~l~g~~~~~P~~~~-----~~pv~~~~~V~~~~GTG~V~~~Pah~~~D~~~~~~~~L-~ 423 (952)
+.......++. ..+...+|+.|.|+++.||++++ .+||+.++||++++|||+||+|||||++||+++++||| |
T Consensus 289 ~~~~~~~~~~~~~~~~~~~g~~L~g~~~~~P~~~~~~~~~~~pvi~~~~V~~~~GTG~Vh~aPahg~~Dy~~~~~~~l~~ 368 (961)
T PRK13804 289 ESVAKKAGVESFERLADVKGEDLEKIVCAHPLDGLDGYEFEVPVLDGDHVTDDAGTGFVHTAPGHGREDFNVWMKYGRTE 368 (961)
T ss_pred HHHHHHhCCCCcEEEEEEEhhhccCCEEECCCCCcccccceeEEEecCccCCCCCCceEEeCCCCCHHHHHHHHHcCCCc
Confidence 22111111111 12345677889999999999999 89999999999999999999999999999999999999 9
Q ss_pred eeeeecCCCCCCccccccccccceEEcccCcccccccCCCCHHHHHHHHHHHHHHcCCCcc-------------------
Q 002217 424 IHSVVMPDDESSSQSEKAYTGEGLIVNSSNLISGLDINGLSCQEATSKVIEWAEKTGNGKK------------------- 484 (952)
Q Consensus 424 i~~vv~~~~~~~~~~~~~y~~~g~l~~~~~~~~~~~~~gl~~~~a~~~ii~~l~~~~~~~~------------------- 484 (952)
+.++|+++ |.+++..+.|.|.. ..++.|+...+|++.|++.|.+.|..-+
T Consensus 369 ~~~~vd~~-G~~~~~~~~~~g~~----------v~~~~G~~~~ea~~~Ii~~L~~~g~l~~~~~~~h~yp~~wR~~~pii 437 (961)
T PRK13804 369 IPVTVDED-GFYTENAPGFGGAR----------VIDDEGKKYGDANKAVIEKLIEAGLLLARGRLKHSYPHSWRSKKPVI 437 (961)
T ss_pred ccccCCCC-eEEccCCCcccccc----------ccccCCcchhhhhHHHHHHHHhCCCcccccceecCCCccCCCCCeEE
Confidence 99999875 55544434433321 1236677777777777777777664211
Q ss_pred ------------------------------eecc--------------cCCceeecccCCCCcccCceEeCCCCceeecC
Q 002217 485 ------------------------------KVNY--------------KLRDWLFARQRYWGEPIPVVFLDGTGETVPLH 520 (952)
Q Consensus 485 ------------------------------~~~~--------------~l~DW~ISRQR~WG~PIPv~~~~~~~~~~~~~ 520 (952)
.++| +++||||||||+||+|||+|||+ +|+.++.+
T Consensus 438 ~r~t~QWFi~~~~~~~~~~~~k~~al~~i~~v~~~P~~~~~r~~~~i~~~~DWcISRQR~WG~PIP~~~~~-~~~~~~~~ 516 (961)
T PRK13804 438 FRNTPQWFISMDKDLGDGTTLRSRALDAIDKTRFVPAAGQNRLYNMIEDRPDWVISRQRAWGVPIPIFVAE-DGEILMDE 516 (961)
T ss_pred EeccccccEEcCCcccchHHHHHHHHHHHhccEEECHHHHHHHHHHHhcCccceeeeeccCCceeeEEEcC-CCCEeccH
Confidence 0011 35799999999999999999995 56654322
Q ss_pred CCCcCCCCCcccccCCCCCCCCCCccccccccccccCCCCCccccCCCcccccccc--chhheecCCCCchhHhhhhhhh
Q 002217 521 EAELPLTLPELDDFTPTGTGEPPLSKAVSWVQTTEHSSGKPARRETSTMPQWAGSC--WYYLRFMDPKNSKELVDKTKER 598 (952)
Q Consensus 521 ~~~l~v~lp~~~~~~~~G~~~~~l~~~~~w~~~~~~~~g~~~~re~d~lD~WfdSs--wy~~~~~~p~~~~~~~~~~~~~ 598 (952)
++... ..+.+...|.+.+......+++... -+|+..++|++|||||||||+ |++.. .+ ...
T Consensus 517 --~~~~~--~~~~~~~~g~~~w~~~~~~~~~~~~-~~~~~~~~r~~DvlDvWFdSg~s~~~~~----~~--------~~~ 579 (961)
T PRK13804 517 --EVNAR--IADAFEEEGADAWFAEGAKERFLGG-FHPNGEFTKVTDILDVWFDSGSTHAFVL----ED--------RPD 579 (961)
T ss_pred --HHHHH--HHHHHHhcCCccccccCHHHhcCcc-cCcccceEecCcceeeeecCCCCccccc----cC--------Ccc
Confidence 22111 0111222343221111122222111 125678999999999999995 43321 00 112
Q ss_pred cCCCceeEecCchhhHHHHHHHHHHHHHHHHhc-CcCCCCcchhhhhhceeccccceeEEecCCCccccCCCCCcccccc
Q 002217 599 YWSPVDVYVGGAEHAVLHLLYARFWHKVLYDIG-VVSTKEPFKCVINQGIILGEMQYMVCKDVDGSYISADSTDTLGEYE 677 (952)
Q Consensus 599 ~w~PvDlyv~G~D~~~~HLly~Rfw~~~L~~~~-~~~~~~PFk~l~~~G~vl~~~~y~~~~d~~g~~~~~~~~~~~~~~~ 677 (952)
++||+|+|++|+||+ |||+++++.++ .+.+.+||++|++||||++.
T Consensus 580 ~~~PaD~~~eG~Di~-------rgWF~s~ll~s~~~~~~~P~k~V~~HG~vld~-------------------------- 626 (961)
T PRK13804 580 LKWPADLYLEGSDQH-------RGWFNSSLLESCGTRGRAPYKAVLTHGFTLDE-------------------------- 626 (961)
T ss_pred cCCCceEEEEEcccc-------cHHHHHHHHHHHHhcCCCChhhEEEeccEECC--------------------------
Confidence 347999999999996 99966554444 45678999999999999863
Q ss_pred cccCccccccccCCceeeccCcchhhcccccccccCCCCCCChhhHHhhhCchhhhhhhhhcCCCCCCCCCChhhHHHH-
Q 002217 678 QESIPEEKVMKSGDFFVMKDNPNIRLIARAHKMSKSRGNVVNPDDVVTEYGADSLRLYEMFMGPFRDSKTWNTSGIEGV- 756 (952)
Q Consensus 678 ~~~~~~~~v~~~~~~~vl~~~~~~~v~~~g~KMSKSkGNvV~P~eii~~YGaDalRl~ll~~~~~~~~~~~s~~~i~~~- 756 (952)
+|+|||||+||||+|.++|++||||+||||+++ +++++|.+|+++.+..+
T Consensus 627 ----------------------------~G~KMSKSlGNvIdP~~ii~~yGaD~lRl~lls-~~~~~D~~fs~~~l~~~~ 677 (961)
T PRK13804 627 ----------------------------KGEKMSKSLGNTVSPQDVIKQSGADILRLWVAS-VDYSDDQRIGKEILKQVS 677 (961)
T ss_pred ----------------------------CCCCccCCCCCcCCHHHHHHhcCHHHHHHHHHh-CCCCCCcccCHHHHHHHH
Confidence 389999999999999999999999999999996 56789999998887664
Q ss_pred --HHHHHHHHHHHhccCCCCCCCCCCc----cCCCCCChHHHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHH-HHHhcc
Q 002217 757 --HRFLGRMWRLIVGSSLPDGTFKGGT----VVNDEEPTLEQLCTLHKCIAKVTEEIEGTRFNTGISAMMEFI-NAAYKW 829 (952)
Q Consensus 757 --~r~l~~l~~~~~~~~~~~~~~~~~~----~~~~~~~d~~~l~~l~~~i~~v~~~~e~~~f~~ai~~l~~f~-~~~~~~ 829 (952)
++.|.|++++++++.. ++.+.. .......|+|+++++++++++++++|++|+|++|++++++|+ +++++|
T Consensus 678 ~~~~kL~N~~rf~l~nl~---~~~~~~~~~~~~~~~~~D~wil~~l~~~~~~v~~~~e~y~f~~a~~~l~~f~~~~lsn~ 754 (961)
T PRK13804 678 ETYRKLRNTLRWLLGNLA---HFDPGEDVVAYADLPELERYMLHRLNELDGLVREAYDAYDFKRIYKALVNFVNVDLSAF 754 (961)
T ss_pred HHHHHHHHHHHHHHhccc---cCCcccccCChhhcCHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHH
Confidence 5556666666665431 222111 011234588999999999999999999999999999999999 465544
Q ss_pred cc----------------------hhHHHHHHHHHHhCCcchhHHHHHHHHcCC--CCCccccCCCCCCccccC
Q 002217 830 EK----------------------HPRKIIEPFILLLAPYAPHMSEELWFRLGH--SNSLAYESFPKANPDYLK 879 (952)
Q Consensus 830 ~~----------------------~~~~vL~~l~~LLaPf~P~iaEElw~~L~~--~~sV~~~~WP~~~~~~l~ 879 (952)
|. .++.+|+.+++||+|||||+|||||+.|+. .+|||++.||.+++.+.+
T Consensus 755 Yle~~K~rl~~~~~~~~~r~~~~~vL~~il~~l~~lLaPi~P~~aEeiw~~L~~~~~~sv~l~~wP~~~~~~~d 828 (961)
T PRK13804 755 YFDIRKDALYCDAPSSLRRRAAQTVFYEIFVRLTKWLAPILPFTAEEAWLYRYPEEEVSVHLEQFPETPAFWRD 828 (961)
T ss_pred HHHHhhHhhhcCCCCcHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHhcccCCCCceEecCCCCCcchhCC
Confidence 20 134789999999999999999999999983 569999999998766544
No 11
>PTZ00427 isoleucine-tRNA ligase, putative; Provisional
Probab=100.00 E-value=2.8e-126 Score=1187.52 Aligned_cols=673 Identities=21% Similarity=0.335 Sum_probs=524.5
Q ss_pred cccCCChhhhhHHHHHHHHHcCCCCCCCCCCCCCCcEEEEcCCCCCCCCCCCCchhHHHHHHHHHHHHHHHcCCcccccc
Q 002217 60 VKRAYPFHEIEPKWQSYWENNRTFRTPDEIDTSKPKFYVLDMFPYPSGAGLHVGHPLGYTATDILARLKRMQGYNVLHPM 139 (952)
Q Consensus 60 ~~~~y~~~~iE~k~~~~W~~~~~f~~~~~~~~~k~kf~i~~~~Pypng~~lHiGH~~~~~~~Di~~Ry~r~~G~~V~~~~ 139 (952)
++..||+.++|++|+++|+++++|++..+.+.++++|++++||||+||. |||||+++++++|+++||+||+||+|++++
T Consensus 68 ~~~~~~~~~~E~~~~~~W~e~~~f~~~~~~~~~~~~Fv~~~gPPyanG~-lHiGHal~~tikDii~Ry~rm~G~~V~~~~ 146 (1205)
T PTZ00427 68 VSENPNIVEEEEKVLKYWKSIDAFNTSNKLAKNKKAYIFYDGPPFATGL-PHYGHLLAGIIKDCVTRYFYQCGFSVERKF 146 (1205)
T ss_pred CCCCCCHHHHHHHHHHHHHhCCCcccCccccCCCCcEEEecCCCCCCCC-cchhHHHHHHHHHHHHHHHHcCCCeeccCC
Confidence 6778999999999999999999999875444678889999999999998 999999999999999999999999999999
Q ss_pred cccccChHHHHHHHH-hCC----------------CchHHHHHHHHHHHHHHHHcCCccccCCcccCCChhHHHHHHHHH
Q 002217 140 GWDAFGLPAEQYAIE-TGT----------------HPKITTLRNINRFRTQLKSLGFSYDWNREISTIEPAYYKWTQWIF 202 (952)
Q Consensus 140 G~D~~Glpie~~a~~-~g~----------------~~~~~~~~~~~~~~~~l~~lgi~~Dw~~~~~T~~~~~~~~v~~~f 202 (952)
||||||+|||.++++ .|+ .|++++.++.+.|++++++||+|+||+++|.|+||.|++.++|+|
T Consensus 147 GwD~hGlPiE~~vEk~lg~~~k~~i~~~g~~~f~e~c~~~~~~~~~~~~~~~~rlG~~iDw~~~y~T~d~~~~~~v~~~f 226 (1205)
T PTZ00427 147 GWDCHGLPIEYEIEKENNINKKEDILKMGIDVYNEKCRGIVLKYSNEWVKTVERIGRWIDFKNDYKTMDKTFMESVWWVF 226 (1205)
T ss_pred ccCCCCcHHHHHHHHHhCCCcccchhhcCHHHHHHHHHHHHHHHHHHHHHHHHHhCcEEecCCCcCcCCHHHHHHHHHHH
Confidence 999999999999875 342 146788899999999999999999999999999999999999999
Q ss_pred HHHHHCCceeeeccccccCCCCCcccCchhhccCccccCCCCeEEeeccccchhhhhhhhHhhccCCCCCCchHHHHHHH
Q 002217 203 LQLLKRGLAYQAEVPVNWCPALGTVLANEEVVDGVSERGGHPVIRKPMRQWMLKITEYADRLLDDLDDLDWPESVKEMQR 282 (952)
Q Consensus 203 ~~L~~kGliy~~~~~v~wc~~~~t~ls~~Ev~~~~~~~~~~~~~~~~~~~~~~~i~~y~~~l~~~l~~~~~p~~~~~~~~ 282 (952)
.+|+++||||++.++|+|||.|+|+||++||..++.+..
T Consensus 227 ~~L~ekGlIYr~~k~V~wcp~c~TaLS~~EV~~~ykd~~----------------------------------------- 265 (1205)
T PTZ00427 227 SELYKNNYVYKSFKVMPYSCKCNTPISNFELNLNYKDTP----------------------------------------- 265 (1205)
T ss_pred HHHHHCCCEEecceeeccCCCCCCchhHHHhhccccccc-----------------------------------------
Confidence 999999999999999999999999999999964333332
Q ss_pred hhhccCCCceEEEEEecC------------------------------C---C---------CccCcEEEEecCCcchhc
Q 002217 283 NWIGRSEGAEMDFRVLDS------------------------------D---G---------QERDIKITVYTTRPDTIF 320 (952)
Q Consensus 283 ~~i~~s~~~~v~f~~~~~------------------------------~---~---------~~~~~~i~i~TT~P~Tl~ 320 (952)
+++++|+|++.+. + + ...+.+++||||||||||
T Consensus 266 -----dpsi~v~F~l~~~~~~~~~~~~~~~~~~~~~~~~~i~y~~~~~~~~~~~~~~~~~~~~~~~~~lliwTTtPwTLp 340 (1205)
T PTZ00427 266 -----DPSIIISFVLCSDFPKVEEECNIEEDKQLLGEKYSVLYNNKRENSNNGNNNSTNNVCYAQHSEILAWTTTPWTLP 340 (1205)
T ss_pred -----CceEEEEeecccccccccccccccccccccccceeeccccccccccccccccccccccCCCCEEEEEECCchhhh
Confidence 2334444444321 0 0 012468999999999999
Q ss_pred cccEEEECCCCccchhhccccc------hHHHHHHHHHHhc-cchhhHhhhhhcccccccceEEecCC---------CCC
Q 002217 321 GATYLVVAPEHPLLSSLVSTTQ------SQNIEEYKNLASR-KSDLERTELQKEKTGVFSGCYARNPA---------SGE 384 (952)
Q Consensus 321 g~~~v~v~p~~~y~~~~~~~~~------~~~~~~y~~~~~~-~~~~~~~~~~~~~~~~l~g~~~~~P~---------~~~ 384 (952)
||+||||||+..|+.+...... ..+++.+...... ..++ ..+...+|..|.|..|.+|+ .++
T Consensus 341 an~AlaVnPd~~Yv~v~~~~~~~~~i~a~~~~~~~~~~~~~~~~~~--~v~~~~~G~~L~g~~Y~pl~~~~~~~~~~~~~ 418 (1205)
T PTZ00427 341 SNLALCVNEHFTYLRIHHVKSNRVVIVGECRLEWIMKELKWNVEDL--KIVNRFKGKELKGLRYKPLFTNFYEKYNFKER 418 (1205)
T ss_pred hceEEEECCCCeEEEEEecCCCeEEEEehHHHHHHHHhhccccccc--EEEEEeechhhCCCeeeCCccccccccccCCc
Confidence 9999999999999876431111 1223333222110 0111 12344567789999999886 367
Q ss_pred cccEEecCcccCCCCCCceEecCCCChhhHHHHHHcCC--c----eeeeecCCCCCCccccccccccceEEcccCccccc
Q 002217 385 AIPIWVADYVLGSYGTGAIMAVPAHDTRDHEFALKFDI--S----IHSVVMPDDESSSQSEKAYTGEGLIVNSSNLISGL 458 (952)
Q Consensus 385 ~~pv~~~~~V~~~~GTG~V~~~Pah~~~D~~~~~~~~L--~----i~~vv~~~~~~~~~~~~~y~~~g~l~~~~~~~~~~ 458 (952)
.+||+.++||++++|||+||+|||||++||++|++||| | +.++|+++ |.+.... .
T Consensus 419 ~~pVi~~d~V~~~~GTGiVh~aPahg~~Dy~v~~k~gL~~~~~~~~~~~vd~~--------------G~~~~~~-----~ 479 (1205)
T PTZ00427 419 AYKILADDFVTDDAGTGIVHCAPTYGEDDFRVCKKNGVIDPEKNIFIDPLDAN--------------GYFTNEV-----E 479 (1205)
T ss_pred eeEEEccCccCCCCCceeeEecCCCChhHHHHHHHcCCCCccccccccccCCC--------------ceecCCC-----c
Confidence 89999999999999999999999999999999999999 2 56777765 3333221 2
Q ss_pred ccCCCCHHHHHHHHHHHHHHcCCCcc------------------------------------------eecc--------
Q 002217 459 DINGLSCQEATSKVIEWAEKTGNGKK------------------------------------------KVNY-------- 488 (952)
Q Consensus 459 ~~~gl~~~~a~~~ii~~l~~~~~~~~------------------------------------------~~~~-------- 488 (952)
++.|+.+++|++.|++.|++.|...+ +++|
T Consensus 480 ~~~G~~v~dA~~~Ii~~Lk~~g~L~~~e~~~H~yP~cwR~~tpli~~a~~QWFI~~~~~k~~~l~~~~~i~w~P~~~~~~ 559 (1205)
T PTZ00427 480 EVQNLYIKEADNVIKKKLKNENRLLSNNTIVHSYPFCWRSDTPLIYRAIPAWFIRVSNSTNELVKNNETTYWIPAHIKEK 559 (1205)
T ss_pred ccCCCCHHHhHHHHHHHHHhCCCeeeeeeeeccCCEeCCCCCEEEEEecceeEEeCcHHHHHHHHcCCccEEeCchhhHh
Confidence 47888899999999999988876321 1111
Q ss_pred -------cCCceeecccCCCCcccCceEeCCCCceeecCC-CCcCCCCCcccccCCCCCCCCCCcccccccc---ccccC
Q 002217 489 -------KLRDWLFARQRYWGEPIPVVFLDGTGETVPLHE-AELPLTLPELDDFTPTGTGEPPLSKAVSWVQ---TTEHS 557 (952)
Q Consensus 489 -------~l~DW~ISRQR~WG~PIPv~~~~~~~~~~~~~~-~~l~v~lp~~~~~~~~G~~~~~l~~~~~w~~---~~~~~ 557 (952)
+++|||||||||||||||+|+|++|+..+++.. ++|.. ++.. .|.. .-+..|++ ..||+
T Consensus 560 r~~~wl~n~~DWcISRqR~WGtPIPvW~~~~~~~~~~i~s~~el~~-~~~~-----~~~~----dlh~~~iD~~~~~~~~ 629 (1205)
T PTZ00427 560 KFHNWIKDAKDWCISRNRYWGTPIPIWADEKMETVICVESIKHLEE-LSGV-----KNIN----DLHRHFIDHIEIKNPK 629 (1205)
T ss_pred HHHHHHhcCccceeeeccccCccceeEEcCCCCeEeccCCHHHHHH-Hhcc-----ccch----hhcccccChhhccCCc
Confidence 468999999999999999999988776554422 11110 0000 0110 11223333 23443
Q ss_pred CC--CCccccCCCcccccccc-chhheecCCCCc-hhHhhhhhhhcCCCceeEecCchhhHHHHHHHHHHHHHHHHhcC-
Q 002217 558 SG--KPARRETSTMPQWAGSC-WYYLRFMDPKNS-KELVDKTKERYWSPVDVYVGGAEHAVLHLLYARFWHKVLYDIGV- 632 (952)
Q Consensus 558 ~g--~~~~re~d~lD~WfdSs-wy~~~~~~p~~~-~~~~~~~~~~~w~PvDlyv~G~D~~~~HLly~Rfw~~~L~~~~~- 632 (952)
++ ..++|++|||||||||+ |+|+..++|.++ .+. .++|||+|++++|.||+ |||+++|+..+.
T Consensus 630 g~~~~~~~r~~DVlD~WFdSg~~p~a~~~~P~~~~~~~-----f~~~fPaD~i~eG~Dq~-------rgWf~s~l~~s~~ 697 (1205)
T PTZ00427 630 GKTYPKLKRIPEVFDCWFESGSMPYAKVHYPFSTEKED-----FHKIFPADFIAEGLDQT-------RGWFYTLLVISTL 697 (1205)
T ss_pred cccccceeecCceEEEEEeCCCChHHHhCCCcccchhh-----HhccCCceEEEEecchh-------ccHHHHHHHHHHH
Confidence 22 25999999999999995 899998999742 222 25679999999999996 999888777664
Q ss_pred cCCCCcchhhhhhceeccccceeEEecCCCccccCCCCCcccccccccCccccccccCCceeeccCcchhhccccccccc
Q 002217 633 VSTKEPFKCVINQGIILGEMQYMVCKDVDGSYISADSTDTLGEYEQESIPEEKVMKSGDFFVMKDNPNIRLIARAHKMSK 712 (952)
Q Consensus 633 ~~~~~PFk~l~~~G~vl~~~~y~~~~d~~g~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~vl~~~~~~~v~~~g~KMSK 712 (952)
+.++.||++|++||||+++ +|+||||
T Consensus 698 l~~~~PfK~VlvHG~Vld~------------------------------------------------------dG~KMSK 723 (1205)
T PTZ00427 698 LFDKAPFKNLICNGLVLAS------------------------------------------------------DGKKMSK 723 (1205)
T ss_pred hcCCCCcceeEEccEEEcC------------------------------------------------------CCCCccc
Confidence 5779999999999999864 3899999
Q ss_pred CCCCCCChhhHHhhhCchhhhhhhhhcCCC-CCCCCCChhhHHH-HHHHHHHHHH---HHhccCCCCC------CC--CC
Q 002217 713 SRGNVVNPDDVVTEYGADSLRLYEMFMGPF-RDSKTWNTSGIEG-VHRFLGRMWR---LIVGSSLPDG------TF--KG 779 (952)
Q Consensus 713 SkGNvV~P~eii~~YGaDalRl~ll~~~~~-~~~~~~s~~~i~~-~~r~l~~l~~---~~~~~~~~~~------~~--~~ 779 (952)
|+||||||.++|++||||+||||+++++.. +++..|+++.+.+ .++++.++|| |+.++. ... .+ .+
T Consensus 724 SlGNvIDP~evI~kYGADaLR~~Lls~~~~~~~Dl~Fse~~v~e~~r~~l~klwN~~rF~~~~i-~~~~~~~~~~f~~~~ 802 (1205)
T PTZ00427 724 RLKNYPDPLYILDKYGADSLRLYLINSVAVRAENLKFQEKGVNEVVKSFILPFYHSFRFFSQEV-TRYECLNKKQFLFNT 802 (1205)
T ss_pred CCCCCCCHHHHHHhcCCcHHHHHHHhcCCCCCcccccCHHHHHHHHHHHHHHHHHHHHHHHhcc-ccccccccccCCcCc
Confidence 999999999999999999999999987664 7888999999864 5678888886 444321 100 11 10
Q ss_pred Cc-cCCCCCChHHHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHhcccc---------------------hhHHHH
Q 002217 780 GT-VVNDEEPTLEQLCTLHKCIAKVTEEIEGTRFNTGISAMMEFINAAYKWEK---------------------HPRKII 837 (952)
Q Consensus 780 ~~-~~~~~~~d~~~l~~l~~~i~~v~~~~e~~~f~~ai~~l~~f~~~~~~~~~---------------------~~~~vL 837 (952)
.. .......|+|+++++++++++|+++|++|+|++|+.++++|+++++.||. .++++|
T Consensus 803 ~~~~~~~~~~DrWILs~l~~li~~v~~~me~Y~f~~A~~~i~~Fi~~lsnwYIe~~K~rl~~~~~~~~~~~a~~tL~~vL 882 (1205)
T PTZ00427 803 DYIYKNDNIMDQWIFSSVQSLTKSVHTEMKAYKLYNVLPKLLQFIENLTNWYIRLNRDRMRGSLGEENCLQSLCTTYRTL 882 (1205)
T ss_pred ccccccCCHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHhccHHHHHcchhhccCCCcHHHHHHHHHHHHHH
Confidence 00 01123458999999999999999999999999999999999988877752 134789
Q ss_pred HHHHHHhCCcchhHHHHHHHHcCC--------------------------CCCccccCCCCCCccc
Q 002217 838 EPFILLLAPYAPHMSEELWFRLGH--------------------------SNSLAYESFPKANPDY 877 (952)
Q Consensus 838 ~~l~~LLaPf~P~iaEElw~~L~~--------------------------~~sV~~~~WP~~~~~~ 877 (952)
+.+++||||||||+|||||+.|+. .+|||++.||++++.+
T Consensus 883 ~~~~~LLaPf~PfiaEeiyq~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Svh~~~~P~~~~~~ 948 (1205)
T PTZ00427 883 HLFTVLMAPFTPFITEYIYQQLRRVKSTNEHNENNETGNTKEGDLNRGVIHKSVHFIMLPQVDEKY 948 (1205)
T ss_pred HHHHHHccccchHHHHHHHHHhhhccccccccccccccccccccccccCCCCeeEeeCCCCCcchh
Confidence 999999999999999999999952 2589999999988765
No 12
>TIGR00392 ileS isoleucyl-tRNA synthetase. The isoleucyl tRNA synthetase (IleS) is a class I amino acyl-tRNA ligase and is particularly closely related to the valyl tRNA synthetase. This model may recognize IleS from every species, including eukaryotic cytosolic and mitochondrial forms.
Probab=100.00 E-value=6.1e-126 Score=1183.08 Aligned_cols=684 Identities=26% Similarity=0.417 Sum_probs=534.4
Q ss_pred cccCCChhhhhHHHHHHHHHcCCCCCCCCCCCCCCcEEEEcCCCCCCCCCCCCchhHHHHHHHHHHHHHHHcCCcccccc
Q 002217 60 VKRAYPFHEIEPKWQSYWENNRTFRTPDEIDTSKPKFYVLDMFPYPSGAGLHVGHPLGYTATDILARLKRMQGYNVLHPM 139 (952)
Q Consensus 60 ~~~~y~~~~iE~k~~~~W~~~~~f~~~~~~~~~k~kf~i~~~~Pypng~~lHiGH~~~~~~~Di~~Ry~r~~G~~V~~~~ 139 (952)
++.+||+.++|++||++|+++++|++..+.+.++++|+|++||||+||. |||||++|++++|+++||+||+||+|+|++
T Consensus 2 f~~~~~~~~~E~~~~~~W~~~~~f~~~~~~~~~~~~f~i~~~pPy~nG~-lH~GH~~~~~~~D~~~Ry~rm~G~~v~~~~ 80 (861)
T TIGR00392 2 FPMRGNLSKREEKILAFWQENDIFEKVKKLNKGKPEFIFHDGPPYANGS-IHLGHALNKILKDIILRYKTMQGFNVTRKP 80 (861)
T ss_pred CCCCCChhHhhHHHHHHHHHCCchhhhhhccCCCCCeEEecCCCCCCCC-ccHHHHHHHHHHHHHHHHHHcCCCccCCCC
Confidence 4567999999999999999999999764445678999999999999998 999999999999999999999999999999
Q ss_pred cccccChHHHHHHHHh-CCC------c----------hHHHHHHHHHHHHHHHHcCCccccCCcccCCChhHHHHHHHHH
Q 002217 140 GWDAFGLPAEQYAIET-GTH------P----------KITTLRNINRFRTQLKSLGFSYDWNREISTIEPAYYKWTQWIF 202 (952)
Q Consensus 140 G~D~~Glpie~~a~~~-g~~------~----------~~~~~~~~~~~~~~l~~lgi~~Dw~~~~~T~~~~~~~~v~~~f 202 (952)
||||||+|||.+|++. |++ + ++++.++++.|++||++||+++||+++|.|+||.|+++++|+|
T Consensus 81 G~D~~Glpie~~~ek~l~~~~~~~~~~~~~~~f~~~c~~~~~~~~~~~~~~~~~lG~~~dw~~~y~T~~p~y~~~~~~~f 160 (861)
T TIGR00392 81 GWDTHGLPIEHKVEKKLGISGKKEISSLEIEEFREKCREFALKQIEEQREQFQRLGVWGDWENPYKTMDPSYEESQWWLF 160 (861)
T ss_pred CcCCCccHHHHHHHHHhCcccccccchhhHHHHHHHHHHHHHHHHHHHHHHHHHhCceecCCCCcCcCCHHHHHHHHHHH
Confidence 9999999999999775 654 2 4788999999999999999999999999999999999999999
Q ss_pred HHHHHCCceeeeccccccCCCCCcccCchhhccCccccCCCCeEEeeccccchhhhhhhhHhhccCCCCCCchHHHHHHH
Q 002217 203 LQLLKRGLAYQAEVPVNWCPALGTVLANEEVVDGVSERGGHPVIRKPMRQWMLKITEYADRLLDDLDDLDWPESVKEMQR 282 (952)
Q Consensus 203 ~~L~~kGliy~~~~~v~wc~~~~t~ls~~Ev~~~~~~~~~~~~~~~~~~~~~~~i~~y~~~l~~~l~~~~~p~~~~~~~~ 282 (952)
.+|+++||||++.++|+|||.|+|+||++||+++.+++++
T Consensus 161 ~~l~~~gliyr~~~~v~w~p~~~T~La~~Ev~~~~~~~~~---------------------------------------- 200 (861)
T TIGR00392 161 KEAHEKGLLYRGLKPVYWSPRCRTALAEAEVEYKENYKDV---------------------------------------- 200 (861)
T ss_pred HHHHHCCCEeecceeeecCCCcCCcccHHHHhcccccccc----------------------------------------
Confidence 9999999999999999999999999999999986554421
Q ss_pred hhhccCCCceEEEEEecCCCC--ccC-cEEEEecCCcchhccccEEEECCCCccchhhccccch--HHHHHHHHHHhccc
Q 002217 283 NWIGRSEGAEMDFRVLDSDGQ--ERD-IKITVYTTRPDTIFGATYLVVAPEHPLLSSLVSTTQS--QNIEEYKNLASRKS 357 (952)
Q Consensus 283 ~~i~~s~~~~v~f~~~~~~~~--~~~-~~i~i~TT~P~Tl~g~~~v~v~p~~~y~~~~~~~~~~--~~~~~y~~~~~~~~ 357 (952)
++.+++|+|++.+.+.. ... .+++||||||||||||+||+|||+++|+.+....... ...+++.+......
T Consensus 201 ----~~~~~~v~f~~~~~~~~~~~~~~~~l~i~TTrP~Tl~~~~ai~v~p~~~Y~~~~~~~~~~~~i~~~~~~~~~~~~~ 276 (861)
T TIGR00392 201 ----KDPSIYVKFPVKKDKKTYLKVKLSSLLIWTTTPWTLPSNLAIAVHPDFEYALVQDNTKVEYFILAKKLVEKLYNKA 276 (861)
T ss_pred ----cCceEEEEEEecCCcccccccccceEEEEECCcccccCCeeeeeCCCCceEEEEcCCCCcEEEEeHHHHHHHHHhc
Confidence 46788999999542210 001 2899999999999999999999999998665432111 01122222111111
Q ss_pred hhhHhhhhhcccccccceEEecCCCCCcc------cEEec-CcccCCCCCCceEecCCCChhhHHHHHHcCCceeeeecC
Q 002217 358 DLERTELQKEKTGVFSGCYARNPASGEAI------PIWVA-DYVLGSYGTGAIMAVPAHDTRDHEFALKFDISIHSVVMP 430 (952)
Q Consensus 358 ~~~~~~~~~~~~~~l~g~~~~~P~~~~~~------pv~~~-~~V~~~~GTG~V~~~Pah~~~D~~~~~~~~L~i~~vv~~ 430 (952)
..+...+.+.+|..|.|++|.||++++++ |++.+ +||++++|||+||+|||||++||+++++||||++++|++
T Consensus 277 ~~~~~~~~~~~G~~l~g~~~~~P~~~~~~~~~~~~p~v~~~~~V~~~~GTG~V~~~Pah~~~D~~~~~~~~l~~~~~vd~ 356 (861)
T TIGR00392 277 GSDYEIIKTFKGSDLEGLEYEHPLYDFVSQLKEGAPVVIGGDHVTTEDGTGIVHTAPGHGEEDYEIGKKYGLEVLSPVDE 356 (861)
T ss_pred CCceEEEeeecchhhCCCEEECCCCccccccccCCcEEeCCCCCCCCCCCceeEcCCCCCHHHHHHHHHcCCCcccccCC
Confidence 11111233455667999999999999998 97665 999999999999999999999999999999999888876
Q ss_pred CCCCCccccccccccceEEcccCcccccccCCCCHHHHHHHHHHHHHHcCCCcc--------------------------
Q 002217 431 DDESSSQSEKAYTGEGLIVNSSNLISGLDINGLSCQEATSKVIEWAEKTGNGKK-------------------------- 484 (952)
Q Consensus 431 ~~~~~~~~~~~y~~~g~l~~~~~~~~~~~~~gl~~~~a~~~ii~~l~~~~~~~~-------------------------- 484 (952)
+ |.+....+.|.|. + ..+.|+...+|+++|++.|++.|...+
T Consensus 357 ~-g~~~~~~~~~~g~--~---------~~~~g~~~~~a~~~ii~~L~~~g~l~~~~~~~h~~p~~~R~~~~v~~~~~~QW 424 (861)
T TIGR00392 357 K-GVYTEGVNDFQGR--F---------VKDADKDIIKANKIIIEQLKDKGLLLKAEKITHSYPHCWRTKTPVIYRATEQW 424 (861)
T ss_pred C-ceECCcCcccccc--c---------cccCCccHHHhHHHHHHHHHhCCCeeeeeeEecCCCccCCCCCEEEEecCccc
Confidence 5 3332222223321 1 247899999999999999999886321
Q ss_pred ----------------eecc--------------cCCceeecccCCCCcccCceEeCCCCceeecCCCCcCCCCCc-c-c
Q 002217 485 ----------------KVNY--------------KLRDWLFARQRYWGEPIPVVFLDGTGETVPLHEAELPLTLPE-L-D 532 (952)
Q Consensus 485 ----------------~~~~--------------~l~DW~ISRQR~WG~PIPv~~~~~~~~~~~~~~~~l~v~lp~-~-~ 532 (952)
++++ +++||||||||+||+|||+|+|++||..+++ .+++ + .
T Consensus 425 Fi~~~~~k~~~l~~~~~i~~~P~~~~~~~~~~l~~l~DW~ISRqr~WG~pIP~~~~~~~~~~~~~-------~~~~~~~~ 497 (861)
T TIGR00392 425 FIKTKDIKDQMLEQIKKVNWVPEWGEGRFGNWLENRPDWCISRQRYWGIPIPIWYCEDTGEPIVV-------GSIEELIE 497 (861)
T ss_pred cEEcHHHHHHHHHHhCCcEEECchHHHHHHHHHhCCCcceeeccccCCCeeeEEEECCCCCCcCc-------hhHHHHHH
Confidence 0111 3799999999999999999999988765322 1111 0 0
Q ss_pred ccCCCCCCCCCCcccc---ccccccccCCCCCccccCCCcccccccc-chhheecCCCCchhHhhhhhhhcCCCceeEec
Q 002217 533 DFTPTGTGEPPLSKAV---SWVQTTEHSSGKPARRETSTMPQWAGSC-WYYLRFMDPKNSKELVDKTKERYWSPVDVYVG 608 (952)
Q Consensus 533 ~~~~~G~~~~~l~~~~---~w~~~~~~~~g~~~~re~d~lD~WfdSs-wy~~~~~~p~~~~~~~~~~~~~~w~PvDlyv~ 608 (952)
.+...|.+.++...+. +|+...|++| ..++|++|||||||||+ ||+....+|.++. ..++|||+|+|++
T Consensus 498 ~~~~~g~~~w~~~~~~~~~~~~~~~~~~~-~~~~r~~dvlDvWfdS~~~~~~~~~~~~~~~------~f~~~~P~d~~i~ 570 (861)
T TIGR00392 498 LIELKGIDAWFEDLHRDFLDKITLKSGDG-GEYRRVPDVLDVWFDSGSMPYASIHYPFENE------KFKEVFPADFILE 570 (861)
T ss_pred HHHHhCCccccccchhhhcCchhccCCCC-cceEEccccccchhhcCcchHHhcCCCCCcc------hhhccCCceEEEE
Confidence 0111233222333334 3444567666 68999999999999996 5554445665432 1367899999999
Q ss_pred CchhhHHHHHHHHHHHHHHHHhcC-cCCCCcchhhhhhceeccccceeEEecCCCccccCCCCCcccccccccCcccccc
Q 002217 609 GAEHAVLHLLYARFWHKVLYDIGV-VSTKEPFKCVINQGIILGEMQYMVCKDVDGSYISADSTDTLGEYEQESIPEEKVM 687 (952)
Q Consensus 609 G~D~~~~HLly~Rfw~~~L~~~~~-~~~~~PFk~l~~~G~vl~~~~y~~~~d~~g~~~~~~~~~~~~~~~~~~~~~~~v~ 687 (952)
|+||+ |||+++++..++ +.+.+||+++++||||++.
T Consensus 571 G~Di~-------r~Wf~~~~~~~~~~~~~~P~k~v~~hG~vl~~------------------------------------ 607 (861)
T TIGR00392 571 GSDQT-------RGWFYSSLAIGTALFGQAPYKNVITHGFTLDE------------------------------------ 607 (861)
T ss_pred ecchh-------ccHHHHHHHHHHHHcCCCChHhhEecceEECC------------------------------------
Confidence 99996 999887776665 4578999999999999853
Q ss_pred ccCCceeeccCcchhhcccccccccCCCCCCChhhHHhhhCchhhhhhhhhcCCCCCCCCCChhhHHHHHH-HHHHHHH-
Q 002217 688 KSGDFFVMKDNPNIRLIARAHKMSKSRGNVVNPDDVVTEYGADSLRLYEMFMGPFRDSKTWNTSGIEGVHR-FLGRMWR- 765 (952)
Q Consensus 688 ~~~~~~vl~~~~~~~v~~~g~KMSKSkGNvV~P~eii~~YGaDalRl~ll~~~~~~~~~~~s~~~i~~~~r-~l~~l~~- 765 (952)
+|+|||||+||+|+|.++|++||||++|||++++ +..+|.+|+++.++++.+ +.+.+||
T Consensus 608 ------------------~G~KMSKSkGNvI~p~d~i~~yGaDalR~~ll~~-~~~~D~~fs~~~l~~~~~~~~n~l~N~ 668 (861)
T TIGR00392 608 ------------------KGRKMSKSLGNVVDPLKVINKYGADILRLYVASS-DPWEDLRFSDEILKQVVEKYRKIRWNT 668 (861)
T ss_pred ------------------CCCCcCCCCCCCCCHHHHHHHcCHHHHHHHHHhC-CCCCCceECHHHHHHHHHHHHHHHHHH
Confidence 3799999999999999999999999999999988 899999999999988665 5555554
Q ss_pred --HHh--ccCCCCCCCCCC--cc--CCCCCChHHHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHH-Hhccc------
Q 002217 766 --LIV--GSSLPDGTFKGG--TV--VNDEEPTLEQLCTLHKCIAKVTEEIEGTRFNTGISAMMEFINA-AYKWE------ 830 (952)
Q Consensus 766 --~~~--~~~~~~~~~~~~--~~--~~~~~~d~~~l~~l~~~i~~v~~~~e~~~f~~ai~~l~~f~~~-~~~~~------ 830 (952)
++. +. +. ++.+. .. ......|.++++++++++++++++|++|+|++|++.+++|++. +++||
T Consensus 669 ~~~~~~~~~-l~--~~~~~~~~~~~~~l~~~d~~ll~~l~~~~~~v~~~~e~~~~~~a~~~l~~f~~~~l~n~Yi~~~k~ 745 (861)
T TIGR00392 669 YRFLLTYAN-LD--KFDPLFNSVAVEKFPEEDRWILSRLNSLVEEVNEALEKYNFHKVLRALQDFIVEELSNWYIRIIRD 745 (861)
T ss_pred HHHHHHHhc-cc--cCCccccccccccCCHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHhhH
Confidence 443 22 11 12111 00 0123357889999999999999999999999999999999865 54432
Q ss_pred ----c-----------hhHHHHHHHHHHhCCcchhHHHHHHHHcCCC---CCccccCCCCCCccccC
Q 002217 831 ----K-----------HPRKIIEPFILLLAPYAPHMSEELWFRLGHS---NSLAYESFPKANPDYLK 879 (952)
Q Consensus 831 ----~-----------~~~~vL~~l~~LLaPf~P~iaEElw~~L~~~---~sV~~~~WP~~~~~~l~ 879 (952)
. .++.+++.+++||+|||||+|||||+.|+.. +||+.++||++++.+.+
T Consensus 746 ~lw~~~~~~~~~~~~~~l~~~l~~l~~lL~P~~P~~aeeiw~~L~~~~~~~si~~~~wP~~~~~~~d 812 (861)
T TIGR00392 746 RLYCEAKDNDKRAAQTTLYYALLTLVRLLAPFLPHTAEEIYQNLPGGEEEESVHLNLWPEVDEEFID 812 (861)
T ss_pred HhccCCCCHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHhccccCCCCceeccCCCCCchhhcC
Confidence 0 2347889999999999999999999999753 69999999998776554
No 13
>PLN02882 aminoacyl-tRNA ligase
Probab=100.00 E-value=3.6e-125 Score=1183.32 Aligned_cols=674 Identities=24% Similarity=0.364 Sum_probs=529.6
Q ss_pred ccCCChhhhhHHHHHHHHHcCCCCCCCCCCCCCCcEEEEcCCCCCCCCCCCCchhHHHHHHHHHHHHHHHcCCccccccc
Q 002217 61 KRAYPFHEIEPKWQSYWENNRTFRTPDEIDTSKPKFYVLDMFPYPSGAGLHVGHPLGYTATDILARLKRMQGYNVLHPMG 140 (952)
Q Consensus 61 ~~~y~~~~iE~k~~~~W~~~~~f~~~~~~~~~k~kf~i~~~~Pypng~~lHiGH~~~~~~~Di~~Ry~r~~G~~V~~~~G 140 (952)
.+.|||.++|++|+++|+++++|++..+.++++|+|++++||||+||. |||||+++++++|+++||+||+||+|++++|
T Consensus 5 ~~~~~~~~~E~~~~~~W~e~~~f~~~~~~~~~~~~f~~~dgPPyanG~-~HiGH~~~~~ikDii~Ry~rm~G~~V~~~~G 83 (1159)
T PLN02882 5 GKDFSFPKQEEKILSLWSEIDAFKTQLKRTEGLPEYIFYDGPPFATGL-PHYGHILAGTIKDIVTRYQSMTGHHVTRRFG 83 (1159)
T ss_pred CCCCCHHHHHHHHHHHHHhCCCccccccccCCCCCEEEeCCCCCCCCc-chhhHHHHHHHHHHHHHHHHcCCCcccccCc
Confidence 467999999999999999999999876555678999999999999998 9999999999999999999999999999999
Q ss_pred ccccChHHHHHHHH-hCCC----------------chHHHHHHHHHHHHHHHHcCCccccCCcccCCChhHHHHHHHHHH
Q 002217 141 WDAFGLPAEQYAIE-TGTH----------------PKITTLRNINRFRTQLKSLGFSYDWNREISTIEPAYYKWTQWIFL 203 (952)
Q Consensus 141 ~D~~Glpie~~a~~-~g~~----------------~~~~~~~~~~~~~~~l~~lgi~~Dw~~~~~T~~~~~~~~v~~~f~ 203 (952)
|||||+|||.++++ .|++ |++++.++++.|++++++||+|+||+++|.||||.|++.++|+|.
T Consensus 84 wD~hGlPiE~~vek~lgi~~~~~i~~~g~~~f~~~c~~~~~~~~~~~~~~~~rlG~~~D~~~~y~T~d~~~~~~v~~~f~ 163 (1159)
T PLN02882 84 WDCHGLPVEYEIDKKLGIKRRDDVLKMGIDKYNEECRSIVTRYSKEWEKTVTRTGRWIDFENDYKTMDPKFMESVWWVFK 163 (1159)
T ss_pred cCCCCcHHHHHHHHHcCCCCccchhhcCHHHHHHHHHHHHHHHHHHHHHHHHHcCcEEECCCCcCcCCHHHHHHHHHHHH
Confidence 99999999999854 4653 456788999999999999999999999999999999999999999
Q ss_pred HHHHCCceeeeccccccCCCCCcccCchhhccCccccCCCCeEEeeccccchhhhhhhhHhhccCCCCCCchHHHHHHHh
Q 002217 204 QLLKRGLAYQAEVPVNWCPALGTVLANEEVVDGVSERGGHPVIRKPMRQWMLKITEYADRLLDDLDDLDWPESVKEMQRN 283 (952)
Q Consensus 204 ~L~~kGliy~~~~~v~wc~~~~t~ls~~Ev~~~~~~~~~~~~~~~~~~~~~~~i~~y~~~l~~~l~~~~~p~~~~~~~~~ 283 (952)
+|+++||||++.++|+|||.|+|+||++|++.++...
T Consensus 164 ~l~~kGliyr~~~~v~wcp~~~TaLs~~E~~~~Yk~~------------------------------------------- 200 (1159)
T PLN02882 164 QLFEKGLVYKGFKVMPYSTACKTPLSNFEAGLNYKDV------------------------------------------- 200 (1159)
T ss_pred HHHHCCCEEecceeEeecCCCCCCcchhhhhhhcccC-------------------------------------------
Confidence 9999999999999999999999999999996432221
Q ss_pred hhccCCCceEEEEEecCCCCccCcEEEEecCCcchhccccEEEECCCCccchhhccccc------hHHHHHHHHHHhcc-
Q 002217 284 WIGRSEGAEMDFRVLDSDGQERDIKITVYTTRPDTIFGATYLVVAPEHPLLSSLVSTTQ------SQNIEEYKNLASRK- 356 (952)
Q Consensus 284 ~i~~s~~~~v~f~~~~~~~~~~~~~i~i~TT~P~Tl~g~~~v~v~p~~~y~~~~~~~~~------~~~~~~y~~~~~~~- 356 (952)
.+.+++|+|++.+.. .+.+++||||||||||||+||||||+..|+.+....+. ..+++.+.......
T Consensus 201 ---~~~si~v~F~l~~~~---~~~~l~iwTTtPwTLpsn~Al~VnP~~~Y~~v~~~~~~~~~i~a~~~~~~~~~~~~~~~ 274 (1159)
T PLN02882 201 ---SDPAVMVSFPIVGDP---DNASFVAWTTTPWTLPSNLALCVNPNFTYVKVRNKYTGKVYIVAESRLSALPTAKPKSK 274 (1159)
T ss_pred ---CCcEEEEEEEecCCC---CCcEEEEEeCCccccccCeEEEECCCCcEEEEEecCCCeEEEEhHHHHHHHHhhhhccc
Confidence 356779999995421 23699999999999999999999999999876542111 11222222111000
Q ss_pred -c-----hhh-HhhhhhcccccccceEEecCC------CCCcccEEecCcccCCCCCCceEecCCCChhhHHHHHHcCC-
Q 002217 357 -S-----DLE-RTELQKEKTGVFSGCYARNPA------SGEAIPIWVADYVLGSYGTGAIMAVPAHDTRDHEFALKFDI- 422 (952)
Q Consensus 357 -~-----~~~-~~~~~~~~~~~l~g~~~~~P~------~~~~~pv~~~~~V~~~~GTG~V~~~Pah~~~D~~~~~~~~L- 422 (952)
+ ..+ -..+.+.+|..|.|++|.+|+ .++.+||+.++||++++|||+||+|||||++||++|++|||
T Consensus 275 ~~~~~~~~~~~~~v~~~~~G~~L~g~~y~p~~~~~~~~~~~~~~Vi~~~~V~~~~GTGiVh~aPahG~~Dy~v~~~~gl~ 354 (1159)
T PLN02882 275 KGSKPENAAEGYEVLAKVPGSSLVGKKYEPLFDYFSEFSDTAFRVVADDYVTDDSGTGVVHCAPAFGEDDYRVCLANGII 354 (1159)
T ss_pred ccccccccccccEEEEEecchhhcCCEEECCccccccccCceEEEEccCccCCCCCcceeEecCCCChhHHHHHHHcCCC
Confidence 0 000 123445677789999998776 24689999999999999999999999999999999999999
Q ss_pred ----ceeeeecCCCCCCccccccccccceEEcccCcccccccCCCCHHHHHHHHHHHHHHcCCCcc--------------
Q 002217 423 ----SIHSVVMPDDESSSQSEKAYTGEGLIVNSSNLISGLDINGLSCQEATSKVIEWAEKTGNGKK-------------- 484 (952)
Q Consensus 423 ----~i~~vv~~~~~~~~~~~~~y~~~g~l~~~~~~~~~~~~~gl~~~~a~~~ii~~l~~~~~~~~-------------- 484 (952)
++.++||++ | .++... ..+.|+.+++|++.|++.|++.|..-+
T Consensus 355 ~~~~~~~~~vd~~-G-------------~~~~~~-----~~~~G~~v~eA~~~Ii~~Lk~~g~L~~~~~~~Hsyp~cwR~ 415 (1159)
T PLN02882 355 EKGGNLPVPVDDD-G-------------CFTEKV-----TDFSGRYVKDADKDIIAAIKAKGRLVKSGSITHSYPFCWRS 415 (1159)
T ss_pred ccccCccceECCC-c-------------eEccCC-----cccCCCCHHHhhHHHHHHHHHCCCccceeeeecCCCEeeCC
Confidence 799999875 3 332211 247888888999999999888876321
Q ss_pred ----------------------------eecc---------------cCCceeecccCCCCcccCceEeCCCCceeecCC
Q 002217 485 ----------------------------KVNY---------------KLRDWLFARQRYWGEPIPVVFLDGTGETVPLHE 521 (952)
Q Consensus 485 ----------------------------~~~~---------------~l~DW~ISRQR~WG~PIPv~~~~~~~~~~~~~~ 521 (952)
+++| +++|||||||||||||||+|+|++|+.++++..
T Consensus 416 ~tpli~~a~~qWFi~~~~~k~~~l~~~~~i~w~P~~~~~~r~~~wl~~~~DW~ISRqR~WGtPIPvw~~~~~~~~~~~~s 495 (1159)
T PLN02882 416 DTPLIYRAVPSWFVKVEEIKDRLLENNKQTYWVPDYVKEKRFHNWLENARDWAVSRSRFWGTPLPIWISDDGEEVVVIGS 495 (1159)
T ss_pred CCEEEEEecceeEEEcHHHHHHHHHhhCCcEEECCcchhhHHHHHHhcCcccceeeccccCCccceEEeCCCCeEEecCc
Confidence 1111 468999999999999999999987665555432
Q ss_pred -CCcCCCCCcccccCCCCCCCCCCcccccccccc-cc-CCC---CCccccCCCcccccccc-chhheecCCCCchhHhhh
Q 002217 522 -AELPLTLPELDDFTPTGTGEPPLSKAVSWVQTT-EH-SSG---KPARRETSTMPQWAGSC-WYYLRFMDPKNSKELVDK 594 (952)
Q Consensus 522 -~~l~v~lp~~~~~~~~G~~~~~l~~~~~w~~~~-~~-~~g---~~~~re~d~lD~WfdSs-wy~~~~~~p~~~~~~~~~ 594 (952)
++|.. +.. ..+. .+ +.+|++.. +| .|| ..++|++|||||||||+ |+|+..++|+++.+.|.
T Consensus 496 ~~el~~-~~~-----~~~~---dl--h~~~id~i~~p~~~~~~~~~~~r~~dVlD~WFdSg~~p~a~~~~p~e~~~~f~- 563 (1159)
T PLN02882 496 IAELEK-LSG-----VKVT---DL--HRHFIDHITIPSSRGPEFGVLRRVDDVFDCWFESGSMPYAYIHYPFENKELFE- 563 (1159)
T ss_pred HHHHHH-HhC-----Cchh---hc--cccchhhhccccccCCchhceEecCceeeeeeccCccHHHHcCCcccChhHhh-
Confidence 22110 000 0011 01 12233211 22 233 36999999999999996 99999999986555443
Q ss_pred hhhhcCCCceeEecCchhhHHHHHHHHHHHHHHHHhcC-cCCCCcchhhhhhceeccccceeEEecCCCccccCCCCCcc
Q 002217 595 TKERYWSPVDVYVGGAEHAVLHLLYARFWHKVLYDIGV-VSTKEPFKCVINQGIILGEMQYMVCKDVDGSYISADSTDTL 673 (952)
Q Consensus 595 ~~~~~w~PvDlyv~G~D~~~~HLly~Rfw~~~L~~~~~-~~~~~PFk~l~~~G~vl~~~~y~~~~d~~g~~~~~~~~~~~ 673 (952)
.+||+|++++|+||+ |||+.+|+.++. +.+.+||++|++||||+++
T Consensus 564 ----~~~PaD~i~eG~Dq~-------RgWf~~ll~~s~~l~~~~pfk~VivhG~vlde---------------------- 610 (1159)
T PLN02882 564 ----KNFPADFVAEGLDQT-------RGWFYTLMVLSTALFDKPAFKNLICNGLVLAE---------------------- 610 (1159)
T ss_pred ----ccCCceEEEEecchh-------hhHHHHHHHHHHHhcCCCCcceeEEccEEECC----------------------
Confidence 347999999999997 999988877764 5678999999999999864
Q ss_pred cccccccCccccccccCCceeeccCcchhhcccccccccCCCCCCChhhHHhhhCchhhhhhhhhcCCC-CCCCCCChhh
Q 002217 674 GEYEQESIPEEKVMKSGDFFVMKDNPNIRLIARAHKMSKSRGNVVNPDDVVTEYGADSLRLYEMFMGPF-RDSKTWNTSG 752 (952)
Q Consensus 674 ~~~~~~~~~~~~v~~~~~~~vl~~~~~~~v~~~g~KMSKSkGNvV~P~eii~~YGaDalRl~ll~~~~~-~~~~~~s~~~ 752 (952)
+|+|||||+||+|+|.++|++||||+||||++++... +++..|+.++
T Consensus 611 --------------------------------~G~KMSKSlGNvIdP~evi~~YGADaLR~~Ll~s~~~~~~d~~fs~~~ 658 (1159)
T PLN02882 611 --------------------------------DGKKMSKSLKNYPDPNEVIDKYGADALRLYLINSPVVRAEPLRFKEEG 658 (1159)
T ss_pred --------------------------------CCCCcccCCCCCCCHHHHHHHhCcHHHHHHHHhCCcccCcCcccCHHH
Confidence 3899999999999999999999999999999965543 6778899888
Q ss_pred HHHHH-HHHHHHHH---HHhccCCCC-----CCCCCCcc----CCCCCChHHHHHHHHHHHHHHHHHHhcCChHHHHHHH
Q 002217 753 IEGVH-RFLGRMWR---LIVGSSLPD-----GTFKGGTV----VNDEEPTLEQLCTLHKCIAKVTEEIEGTRFNTGISAM 819 (952)
Q Consensus 753 i~~~~-r~l~~l~~---~~~~~~~~~-----~~~~~~~~----~~~~~~d~~~l~~l~~~i~~v~~~~e~~~f~~ai~~l 819 (952)
+.+.. +++.++|| |++++.... ..+.+... ......|+|+++++++++++++++|++|+|++|+.++
T Consensus 659 v~~~~~~~l~kl~Na~rfl~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~D~wIls~l~~li~~v~~~me~y~f~~A~~~I 738 (1159)
T PLN02882 659 VFGVVKDVFLPWYNAYRFLVQNAKRLEVEGGAPFVPLDLAKLQNSANVLDRWINSATQSLVKFVREEMGAYRLYTVVPYL 738 (1159)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhhhhhhhccccCCCccccccccccCCHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHH
Confidence 88754 47666665 554432110 11211100 0113458999999999999999999999999999999
Q ss_pred HHHHHHHhcccc---------------------hhHHHHHHHHHHhCCcchhHHHHHHHHcCC-----CCCccccCCCCC
Q 002217 820 MEFINAAYKWEK---------------------HPRKIIEPFILLLAPYAPHMSEELWFRLGH-----SNSLAYESFPKA 873 (952)
Q Consensus 820 ~~f~~~~~~~~~---------------------~~~~vL~~l~~LLaPf~P~iaEElw~~L~~-----~~sV~~~~WP~~ 873 (952)
++|++++++||. .+.++|+.+++||+|||||+||+||+.|+. .+|||++.||++
T Consensus 739 ~~Fv~~lsN~YIe~~Kprl~~~~~~~~~~~al~tL~~vL~~l~~LLaPfmPf~aEeI~q~L~~~~~~~~~SVh~~~~P~~ 818 (1159)
T PLN02882 739 VKFIDNLTNIYVRFNRKRLKGRTGEEDCRTALSTLYNVLLTSCKVMAPFTPFFTEVLYQNLRKVLPGSEESIHYCSFPQV 818 (1159)
T ss_pred HHHHHHHhHHHHHhCCHhhhCCCChHHHHHHHHHHHHHHHHHHHHhhchhhHHHHHHHHHhccccCCCCCceeecCCCCc
Confidence 999986655531 234789999999999999999999999974 579999999999
Q ss_pred CccccCC
Q 002217 874 NPDYLKD 880 (952)
Q Consensus 874 ~~~~l~~ 880 (952)
++.++++
T Consensus 819 ~~~~~d~ 825 (1159)
T PLN02882 819 DEGELDE 825 (1159)
T ss_pred chhhcch
Confidence 8776654
No 14
>PTZ00419 valyl-tRNA synthetase-like protein; Provisional
Probab=100.00 E-value=1.6e-124 Score=1179.85 Aligned_cols=651 Identities=25% Similarity=0.377 Sum_probs=521.2
Q ss_pred ccccCCChhhhhHHHHHHHHHcCCCCCCC--CCCCCCCcEEEEcCCCCCCCCCCCCchhHHHHHHHHHHHHHHHcCCccc
Q 002217 59 VVKRAYPFHEIEPKWQSYWENNRTFRTPD--EIDTSKPKFYVLDMFPYPSGAGLHVGHPLGYTATDILARLKRMQGYNVL 136 (952)
Q Consensus 59 ~~~~~y~~~~iE~k~~~~W~~~~~f~~~~--~~~~~k~kf~i~~~~Pypng~~lHiGH~~~~~~~Di~~Ry~r~~G~~V~ 136 (952)
++++.||+.++|++||++|+++++|+... +.+.++++|+|++||||+||. |||||+++++++|+++||+||+|++|+
T Consensus 23 ~~~~~yd~~~iE~~~~~~W~~~~~f~~~~~~~~~~~~~~f~i~~ppP~~~G~-lHiGHa~~~~~~D~~~Ry~rm~G~~v~ 101 (995)
T PTZ00419 23 SMAASYDPKEVESGWYEWWEKSGFFKPAEDAKSLNSGKKFVIVLPPPNVTGY-LHIGHALTGAIQDSLIRYHRMKGDETL 101 (995)
T ss_pred hcCCCCCHHHHHHHHHHHHHHCCCcccCccccccCCCCeEEEEeCCCCCCCC-CcHHHHHHHHHHHHHHHHHHhcCCccc
Confidence 47788999999999999999999998752 234578999999999999998 999999999999999999999999999
Q ss_pred ccccccccChHHHHHHHH-----hCCC------------chHHHHHHHHHHHHHHHHcCCccccCCcccCCChhHHHHHH
Q 002217 137 HPMGWDAFGLPAEQYAIE-----TGTH------------PKITTLRNINRFRTQLKSLGFSYDWNREISTIEPAYYKWTQ 199 (952)
Q Consensus 137 ~~~G~D~~Glpie~~a~~-----~g~~------------~~~~~~~~~~~~~~~l~~lgi~~Dw~~~~~T~~~~~~~~v~ 199 (952)
|++||||||+|++..+++ .|.+ |++|+.++++.|++||++||+++||+++|+|+||.|.++++
T Consensus 102 ~~~G~D~~Gl~~~~~vE~~l~~~~~~~~~~~~~e~f~~~~~~w~~~~~~~~~~~~~~lG~~~DW~~~~~T~d~~~~~~v~ 181 (995)
T PTZ00419 102 WVPGTDHAGIATQVVVEKKLMKEENKTRHDLGREEFLKKVWEWKDKHGNNICNQLRRLGSSLDWSREVFTMDEQRSKAVK 181 (995)
T ss_pred CCCCCCCCchhhHHHHHHHHHHhcCCChHHcCHHHHHHHHHHHHHHHHHHHHHHHHHhCceeeCCCCcCcCCHHHHHHHH
Confidence 999999999999655432 3433 35788999999999999999999999999999999999999
Q ss_pred HHHHHHHHCCceeeeccccccCCCCCcccCchhhccCccccCCCCeEEeeccccchhhhhhhhHhhccCCCCCCchHHHH
Q 002217 200 WIFLQLLKRGLAYQAEVPVNWCPALGTVLANEEVVDGVSERGGHPVIRKPMRQWMLKITEYADRLLDDLDDLDWPESVKE 279 (952)
Q Consensus 200 ~~f~~L~~kGliy~~~~~v~wc~~~~t~ls~~Ev~~~~~~~~~~~~~~~~~~~~~~~i~~y~~~l~~~l~~~~~p~~~~~ 279 (952)
|+|.+|+++||||++.++|+|||.|+|+||++||++. +.. ...+++++.|.+.+..
T Consensus 182 ~~F~~l~~~Gliyr~~~~V~wcp~~~Talsd~EVe~~--~~~---------~~~~~~~~~~~~~~~~------------- 237 (995)
T PTZ00419 182 EAFVRLYEDGLIYRDTRLVNWCCYLKTAISDIEVEFE--EIE---------KPTKITIPGYDKKVEV------------- 237 (995)
T ss_pred HHHHHHHHCCCEEecceeeecCCCCCCCCchhhcccc--ccc---------ccceeecccccccccc-------------
Confidence 9999999999999999999999999999999999742 111 1123566666433110
Q ss_pred HHHhhhccCCCceEEEEEecCCCCccCcEEEEecCCcchhccccEEEECCCCccchhhccccchHHHHHHHHHHhccchh
Q 002217 280 MQRNWIGRSEGAEMDFRVLDSDGQERDIKITVYTTRPDTIFGATYLVVAPEHPLLSSLVSTTQSQNIEEYKNLASRKSDL 359 (952)
Q Consensus 280 ~~~~~i~~s~~~~v~f~~~~~~~~~~~~~i~i~TT~P~Tl~g~~~v~v~p~~~y~~~~~~~~~~~~~~~y~~~~~~~~~~ 359 (952)
..-.+|+|++.+.+ +.+|+|||||||||+|++||||||++++ |.
T Consensus 238 --------g~l~~i~f~l~~~~----~~~l~vaTTrPeTl~g~~avav~P~d~~---------------y~--------- 281 (995)
T PTZ00419 238 --------GVLWHFAYPLEDSG----QEEIVVATTRIETMLGDVAVAVHPKDER---------------YK--------- 281 (995)
T ss_pred --------ceeEEEEEeecCCC----CcEEEEEeCCcchhhhCeEEEECCCCcH---------------HH---------
Confidence 01126899985321 1389999999999999999999999853 32
Q ss_pred hHhhhhhcccccccceEEecCC-CCCcccEEecC-cccCCCCCCceEecCCCChhhHHHHHHcCCceeeeecCCCCCCcc
Q 002217 360 ERTELQKEKTGVFSGCYARNPA-SGEAIPIWVAD-YVLGSYGTGAIMAVPAHDTRDHEFALKFDISIHSVVMPDDESSSQ 437 (952)
Q Consensus 360 ~~~~~~~~~~~~l~g~~~~~P~-~~~~~pv~~~~-~V~~~~GTG~V~~~Pah~~~D~~~~~~~~L~i~~vv~~~~~~~~~ 437 (952)
.|.|.++.||+ +++.+||+.++ ||++++|||+||+|||||++||+++++||||++++++++
T Consensus 282 -----------~l~G~~~~~Pl~~~~~ipii~~~~~V~~~~GTG~V~~~Pahd~~D~~~~~~~~L~~~~~i~~~------ 344 (995)
T PTZ00419 282 -----------KLHGKELIHPFIPDRKIPIIADDELVDMEFGTGAVKITPAHDPNDYEIAKRHNLPFINIFTLD------ 344 (995)
T ss_pred -----------HhcCCEEECCccCCCEEEEEeCCcccCCCcCCCCeEeCCCCChHHHHHHHHcCCCeeeeeCCC------
Confidence 25799999999 89999999999 999999999999999999999999999999999999875
Q ss_pred ccccccccceEEcccCcccccccCCCCHHHHHHHHHHHHHHcCCCcceecc-----------------------------
Q 002217 438 SEKAYTGEGLIVNSSNLISGLDINGLSCQEATSKVIEWAEKTGNGKKKVNY----------------------------- 488 (952)
Q Consensus 438 ~~~~y~~~g~l~~~~~~~~~~~~~gl~~~~a~~~ii~~l~~~~~~~~~~~~----------------------------- 488 (952)
|.|.... ..+.|+...+|+++|++.|++.|...+...|
T Consensus 345 --------G~~~~~~-----~~~~Gl~~~~ar~~ii~~L~~~g~l~~~~~~~~~~p~~~R~~~~ie~~~~~QWFi~~~~~ 411 (995)
T PTZ00419 345 --------GKINENG-----GEFAGMHRFDCRRKIEEELKEMGLLRDKVPNPMRLPRCSRSGDIVEPMLIPQWYVNCKDM 411 (995)
T ss_pred --------ceEcCCC-----cccCCCCHHHHHHHHHHHHHhcCCEEeeEEeecCCCEeCCCCCEEEEEecCeeeEecHHH
Confidence 3442111 3588999999999999999999876432211
Q ss_pred -----------------------------cCCceeecccCCCCcccCceEeCCCCceeecCCCCcCCCCCcccccCCCCC
Q 002217 489 -----------------------------KLRDWLFARQRYWGEPIPVVFLDGTGETVPLHEAELPLTLPELDDFTPTGT 539 (952)
Q Consensus 489 -----------------------------~l~DW~ISRQR~WG~PIPv~~~~~~~~~~~~~~~~l~v~lp~~~~~~~~G~ 539 (952)
+++|||||||||||+|||+|||++|| ..++++...+..+. ..
T Consensus 412 ~~~al~~v~~~~i~~~P~~~~~~~~~wl~~l~DWcISRQr~WG~pIP~~~~~~~~-~~~~~~~~~~~~~~--------~~ 482 (995)
T PTZ00419 412 AKRAVEAVRNGELKIIPSSHENVWYHWLENIQDWCISRQLWWGHRIPAYRVISKG-PETDPSDEEPWVVA--------RS 482 (995)
T ss_pred HHHHHHHhhcCCeEEEChHHHHHHHHHHhccccceeeeecccCceeeEEEeCCCC-ccccCCCCceEEEc--------CC
Confidence 58899999999999999999999887 33322221111100 00
Q ss_pred CCCCCccccccccccccCCCCCccccCCCcccccccc-chhheecCCCCchhHhhhhhhhcCCCceeEecCchhhHHHHH
Q 002217 540 GEPPLSKAVSWVQTTEHSSGKPARRETSTMPQWAGSC-WYYLRFMDPKNSKELVDKTKERYWSPVDVYVGGAEHAVLHLL 618 (952)
Q Consensus 540 ~~~~l~~~~~w~~~~~~~~g~~~~re~d~lD~WfdSs-wy~~~~~~p~~~~~~~~~~~~~~w~PvDlyv~G~D~~~~HLl 618 (952)
...++.....+ ..|+.|+..++|++|||||||||+ ||+...++|.++.+ .++|||+|+|++|+||+
T Consensus 483 ~~~~~~~~~~~--~~~~~~~~~~~~~~DVlDtWFdS~l~p~~~~g~p~~~~~------~~~~~P~d~~~~G~Dii----- 549 (995)
T PTZ00419 483 EEEALEKAKKK--FGLSEEDFELEQDEDVLDTWFSSGLFPFSTLGWPDQTDD------LQRFFPTSLLETGSDIL----- 549 (995)
T ss_pred HHHHHhhhccc--cCCccccCCeEECCceEEEEEeCCHHHHHHhCCCCChHH------HhhcCCCcEEEechhHH-----
Confidence 00111111111 124557778999999999999998 45555678876432 26789999999999996
Q ss_pred HHHHHHHHHHHhcCc-CCCCcchhhhhhceeccccceeEEecCCCccccCCCCCcccccccccCccccccccCCceeecc
Q 002217 619 YARFWHKVLYDIGVV-STKEPFKCVINQGIILGEMQYMVCKDVDGSYISADSTDTLGEYEQESIPEEKVMKSGDFFVMKD 697 (952)
Q Consensus 619 y~Rfw~~~L~~~~~~-~~~~PFk~l~~~G~vl~~~~y~~~~d~~g~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~vl~~ 697 (952)
|||+.+|+.+|+. .++.||++|++||||+++
T Consensus 550 --~~W~arm~~~~~~~~~~~Pfk~v~~HG~v~d~---------------------------------------------- 581 (995)
T PTZ00419 550 --FFWVARMVMMSLHLTDKLPFKTVFLHAMVRDS---------------------------------------------- 581 (995)
T ss_pred --hHHHHHHHHHHHHhcCCCChHHHhccceEECC----------------------------------------------
Confidence 9999888877764 558999999999999864
Q ss_pred CcchhhcccccccccCCCCCCChhhHHh-------------------------------------hhCchhhhhhhhhcC
Q 002217 698 NPNIRLIARAHKMSKSRGNVVNPDDVVT-------------------------------------EYGADSLRLYEMFMG 740 (952)
Q Consensus 698 ~~~~~v~~~g~KMSKSkGNvV~P~eii~-------------------------------------~YGaDalRl~ll~~~ 740 (952)
+|+|||||+||||||.++|+ +||||+||||+++.+
T Consensus 582 --------~G~KMSKSlGNvIdP~~ii~~~~~~~l~~~~~~~~~~~~e~~~~~~~~~~~f~~gi~~yGaDalR~~l~~~~ 653 (995)
T PTZ00419 582 --------QGEKMSKSKGNVIDPLEVIEGISLQDLNQKLYEGNLPEKEIKRAIELQKKEFPNGIPECGTDALRFGLLAYT 653 (995)
T ss_pred --------CCCCcccCCCCcCChHHHhcccchhhHHHhhhccccchhhhhhHhhhhhccCCCCCcccCcHHHHHHHHhcC
Confidence 37999999999999999999 899999999999999
Q ss_pred CCCCCCCCChhhHHHHHHHHHHHHHHH---hccCCCCCCCCCC-c------cCCCCCChHHHHHHHHHHHHHHHHHHhcC
Q 002217 741 PFRDSKTWNTSGIEGVHRFLGRMWRLI---VGSSLPDGTFKGG-T------VVNDEEPTLEQLCTLHKCIAKVTEEIEGT 810 (952)
Q Consensus 741 ~~~~~~~~s~~~i~~~~r~l~~l~~~~---~~~~~~~~~~~~~-~------~~~~~~~d~~~l~~l~~~i~~v~~~~e~~ 810 (952)
+...|.+|+.+.+.+..+|++++||.+ +++. ........ . .......|+|+++++++++++++++|++|
T Consensus 654 ~~~~Di~~~~~~v~~~~~f~nklwN~~rf~~~~~-~~~~~~~~~~~~~~~~~~~~~~~D~wIls~L~~~i~~v~~~~e~y 732 (995)
T PTZ00419 654 QQGRNINLDINRVVGYRHFCNKLWNAVKFALMKL-LKDFNLPNSTLFKPNNVESLPWEDKWILHRLNVAIKEVTEGFKEY 732 (995)
T ss_pred CCCCCccccHHHHHHHHHHHHHHHHHHHHHHhcc-cccccccccccccccccccCCHHHHHHHHHHHHHHHHHHHHHHcc
Confidence 899999999999999999999999853 3321 11111000 0 01112358999999999999999999999
Q ss_pred ChHHHHHHHHHHH-HHHhcccc---------------------hhHHHHHHHHHHhCCcchhHHHHHHHHcCC----CCC
Q 002217 811 RFNTGISAMMEFI-NAAYKWEK---------------------HPRKIIEPFILLLAPYAPHMSEELWFRLGH----SNS 864 (952)
Q Consensus 811 ~f~~ai~~l~~f~-~~~~~~~~---------------------~~~~vL~~l~~LLaPf~P~iaEElw~~L~~----~~s 864 (952)
+|+.|++++++|+ +++++||. .++++|+.+++||+|||||+|||||+.|+. .+|
T Consensus 733 ~f~~A~~~i~~F~~~~~~n~Yie~~K~~l~~~~~~~~~~~~~~~L~~vL~~~l~LL~PfmPfitEElw~~L~~~~~~~~s 812 (995)
T PTZ00419 733 DFSEATQATYNFWLYELCDVYLELIKPRLSKQSDGERKQHAQDVLHTVLDIGLRLLHPMMPFITEELYQRLPNYLRKSES 812 (995)
T ss_pred CHHHHHHHHHHHHHHhhHHHHHHHhhhhhhcCCCcHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHhhhccCCCCCe
Confidence 9999999999986 33333220 234789999999999999999999999973 469
Q ss_pred ccccCCCCCCccccC
Q 002217 865 LAYESFPKANPDYLK 879 (952)
Q Consensus 865 V~~~~WP~~~~~~l~ 879 (952)
|++++||.+++.+.+
T Consensus 813 i~~~~~P~~~~~~~d 827 (995)
T PTZ00419 813 ISIAKYPQPNPGWNN 827 (995)
T ss_pred eeccCCCCCCcccCC
Confidence 999999998765544
No 15
>PLN02381 valyl-tRNA synthetase
Probab=100.00 E-value=1.1e-123 Score=1164.36 Aligned_cols=641 Identities=25% Similarity=0.419 Sum_probs=511.4
Q ss_pred ccccCCChhhhhHHHHHHHHHcCCCCCCCCCCCCCCcEEEEcCCCCCCCCCCCCchhHHHHHHHHHHHHHHHcCCccccc
Q 002217 59 VVKRAYPFHEIEPKWQSYWENNRTFRTPDEIDTSKPKFYVLDMFPYPSGAGLHVGHPLGYTATDILARLKRMQGYNVLHP 138 (952)
Q Consensus 59 ~~~~~y~~~~iE~k~~~~W~~~~~f~~~~~~~~~k~kf~i~~~~Pypng~~lHiGH~~~~~~~Di~~Ry~r~~G~~V~~~ 138 (952)
++++.|||.++|++||++|+++++|++.. +.++++|+|++||||+||. |||||+++++++|+++||+||+||+|+|+
T Consensus 95 ~~~~~yd~~~iE~~w~~~W~~~~~f~~~~--~~~~~~f~i~~ppPy~nG~-lHiGHa~~~ti~Dii~Ry~rm~G~~vl~~ 171 (1066)
T PLN02381 95 QMAKQYSPSAVEKSWYAWWEKSGYFGADA--KSSKPPFVIVLPPPNVTGA-LHIGHALTAAIEDTIIRWKRMSGYNALWV 171 (1066)
T ss_pred hcccCCCHHHHHHHHHHHHHHCCCccCCc--cCCCCcEEEEeCCCCCCCC-ccHHHHHHHHHHHHHHHHHHhCCCccccc
Confidence 46789999999999999999999999753 4578899999999999998 99999999999999999999999999999
Q ss_pred ccccccChHHHHHHHH-----hCCC------------chHHHHHHHHHHHHHHHHcCCccccCCcccCCChhHHHHHHHH
Q 002217 139 MGWDAFGLPAEQYAIE-----TGTH------------PKITTLRNINRFRTQLKSLGFSYDWNREISTIEPAYYKWTQWI 201 (952)
Q Consensus 139 ~G~D~~Glpie~~a~~-----~g~~------------~~~~~~~~~~~~~~~l~~lgi~~Dw~~~~~T~~~~~~~~v~~~ 201 (952)
+||||||+|+|.++++ .|.+ |.+|+.++++.|++||++||+++||+++|+||||.|+++|+|+
T Consensus 172 ~G~D~~Glp~e~~vek~l~~~~~~~~~~~~re~f~~~~~~~~~~~~~~~~~q~~~lG~s~Dw~~~~~T~d~~~~~~v~~~ 251 (1066)
T PLN02381 172 PGVDHAGIATQVVVEKKLMRERHLTRHDIGREEFVSEVWKWKDEYGGTILNQLRRLGASLDWSRECFTMDEQRSKAVTEA 251 (1066)
T ss_pred CCCCCCcChHHHHHHHHhHhhcCCChhhCCHHHHHHHHHHHHHHHHHHHHHHHHHhCchhccCCccccCCHHHHHHHHHH
Confidence 9999999999988865 2543 3478899999999999999999999999999999999999999
Q ss_pred HHHHHHCCceeeeccccccCCCCCcccCchhhccCccccCCCCeEEeeccccchhhhhhhhHhhccCCCCCCchHHHHHH
Q 002217 202 FLQLLKRGLAYQAEVPVNWCPALGTVLANEEVVDGVSERGGHPVIRKPMRQWMLKITEYADRLLDDLDDLDWPESVKEMQ 281 (952)
Q Consensus 202 f~~L~~kGliy~~~~~v~wc~~~~t~ls~~Ev~~~~~~~~~~~~~~~~~~~~~~~i~~y~~~l~~~l~~~~~p~~~~~~~ 281 (952)
|.+|+++||||++.++|||||.|+|+||++||++. +..+..+. ++. .|+..+
T Consensus 252 F~~L~~~GlIyr~~~~VnWcP~~~TaLSd~EVey~--d~~~~s~~---------~~~-------------~~~~~~---- 303 (1066)
T PLN02381 252 FVRLYKEGLIYRDIRLVNWDCTLRTAISDVEVDYI--DIKERTLL---------KVP-------------GYDKPV---- 303 (1066)
T ss_pred HHHHHHCCCEEeccccccCCCCCCCCccHHHhhhh--ccccchhh---------ccc-------------CCCcce----
Confidence 99999999999999999999999999999999742 22111110 111 122221
Q ss_pred HhhhccCCC--ceEEEEEecCCCCccCcEEEEecCCcchhccccEEEECCCCccchhhccccchHHHHHHHHHHhccchh
Q 002217 282 RNWIGRSEG--AEMDFRVLDSDGQERDIKITVYTTRPDTIFGATYLVVAPEHPLLSSLVSTTQSQNIEEYKNLASRKSDL 359 (952)
Q Consensus 282 ~~~i~~s~~--~~v~f~~~~~~~~~~~~~i~i~TT~P~Tl~g~~~v~v~p~~~y~~~~~~~~~~~~~~~y~~~~~~~~~~ 359 (952)
+.| .+++|++.+. +.+|+|||||||||+|+++|+|||+++. |.
T Consensus 304 ------~~g~~~~~~Y~l~~~-----~~~i~vATtRpEti~g~~avaV~P~d~r---------------y~--------- 348 (1066)
T PLN02381 304 ------EFGVLTSFAYPLEGG-----LGEIVVATTRIETMLGDTAIAIHPDDER---------------YK--------- 348 (1066)
T ss_pred ------eeEEEEEEEEEecCC-----CCEEEEecCCHHHHhcccceeeCCCCcc---------------hh---------
Confidence 112 2467777531 2479999999999999999999999853 22
Q ss_pred hHhhhhhcccccccceEEecCCCCCcccEEec-CcccCCCCCCceEecCCCChhhHHHHHHcCCceeeeecCCCCCCccc
Q 002217 360 ERTELQKEKTGVFSGCYARNPASGEAIPIWVA-DYVLGSYGTGAIMAVPAHDTRDHEFALKFDISIHSVVMPDDESSSQS 438 (952)
Q Consensus 360 ~~~~~~~~~~~~l~g~~~~~P~~~~~~pv~~~-~~V~~~~GTG~V~~~Pah~~~D~~~~~~~~L~i~~vv~~~~~~~~~~ 438 (952)
.|.|.+|.||++++.+||+.+ +||++++|||+||+|||||++||++|++||||++++++.+
T Consensus 349 -----------~L~G~~~~~Pl~~~~ipIi~d~~~Vd~e~GTG~V~i~PaHd~~Dy~~~~~~~L~~i~~id~~------- 410 (1066)
T PLN02381 349 -----------HLHGKFAVHPFNGRKLPIICDAILVDPNFGTGAVKITPAHDPNDFEVGKRHNLEFINIFTDD------- 410 (1066)
T ss_pred -----------hhCCCEEECCCCCCEEEEEECCccccccCCCCcEEecCCCChHHHHHHHHcCCCeeeeeCCC-------
Confidence 257999999999999999985 5999999999999999999999999999999999999876
Q ss_pred cccccccceEEcccCcccccccCCCCHHHHHHHHHHHHHHcCCCcc----------------------------------
Q 002217 439 EKAYTGEGLIVNSSNLISGLDINGLSCQEATSKVIEWAEKTGNGKK---------------------------------- 484 (952)
Q Consensus 439 ~~~y~~~g~l~~~~~~~~~~~~~gl~~~~a~~~ii~~l~~~~~~~~---------------------------------- 484 (952)
|.+... . +..+.||...+|+++|++.|++.|...+
T Consensus 411 -------G~~~~~-~---~~~~~Gl~~~eAr~~Ii~~L~~~g~l~~~~~~~h~~p~c~R~~~~ie~~~~~QWFi~~~~l~ 479 (1066)
T PLN02381 411 -------GKINSN-G---GSEFAGMPRFAAREAVIEALQKKGLYRGAKNNEMRLGLCSRTNDVVEPMIKPQWFVNCSSMA 479 (1066)
T ss_pred -------ceeCCC-C---ccccCCCCHHHHHHHHHHHHHhCCCEecceeeecCCCeeCCCCceEEEeecccceEEchHHH
Confidence 322211 0 1248899999999999999999887531
Q ss_pred -------------eecc--------------cCCceeecccCCCCcccCceEeCCCCceeecCCCCcCCCCCcccccCCC
Q 002217 485 -------------KVNY--------------KLRDWLFARQRYWGEPIPVVFLDGTGETVPLHEAELPLTLPELDDFTPT 537 (952)
Q Consensus 485 -------------~~~~--------------~l~DW~ISRQR~WG~PIPv~~~~~~~~~~~~~~~~l~v~lp~~~~~~~~ 537 (952)
+++| +++|||||||||||+|||+|||+.+... +. ..
T Consensus 480 ~~al~av~~~~~~~i~~~P~~~~~~~~~wl~n~~DWcISRQr~WG~pIPiw~~~~~~~~-------~~----------~~ 542 (1066)
T PLN02381 480 KQALDAAIDGENKKLEFIPKQYLAEWKRWLENIRDWCISRQLWWGHRIPAWYVTLEDDQ-------LK----------EL 542 (1066)
T ss_pred HHHHHHHhhccCCceEEEChHHHHHHHHHHhcCccceeeeecccCCccceEEeccChhh-------cc----------cC
Confidence 1111 6899999999999999999999521110 00 00
Q ss_pred CC--CCCCC-ccccccccccccCC-CC--CccccCCCcccccccc-chhheecCCCCchhHhhhhhhhcCCCceeEecCc
Q 002217 538 GT--GEPPL-SKAVSWVQTTEHSS-GK--PARRETSTMPQWAGSC-WYYLRFMDPKNSKELVDKTKERYWSPVDVYVGGA 610 (952)
Q Consensus 538 G~--~~~~l-~~~~~w~~~~~~~~-g~--~~~re~d~lD~WfdSs-wy~~~~~~p~~~~~~~~~~~~~~w~PvDlyv~G~ 610 (952)
|+ +.... ....+.+...|+.| |. .++|++|||||||||+ |++...++|.+... .++|||+|+|++|.
T Consensus 543 g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~rd~DVlDtWF~Sg~~p~~~lg~P~~~~~------~~~~~P~d~~~~G~ 616 (1066)
T PLN02381 543 GSYNDHWVVARNESDALLEASQKFPGKKFELSQDPDVLDTWFSSGLFPLSVLGWPDDTDD------LKAFYPTSVLETGH 616 (1066)
T ss_pred CcccceEEEccchHhhcchhhcccCCCccceeecCceeeEEEeCCchHHHHhcCCCCHHH------HhccCCCeeeeecc
Confidence 11 00000 00011222223233 33 4899999999999998 55555678876432 26789999999999
Q ss_pred hhhHHHHHHHHHHHHHHHHhcC-cCCCCcchhhhhhceeccccceeEEecCCCccccCCCCCcccccccccCcccccccc
Q 002217 611 EHAVLHLLYARFWHKVLYDIGV-VSTKEPFKCVINQGIILGEMQYMVCKDVDGSYISADSTDTLGEYEQESIPEEKVMKS 689 (952)
Q Consensus 611 D~~~~HLly~Rfw~~~L~~~~~-~~~~~PFk~l~~~G~vl~~~~y~~~~d~~g~~~~~~~~~~~~~~~~~~~~~~~v~~~ 689 (952)
||+ |||++.|..+|+ +.+.+||++|++||||+|+
T Consensus 617 Dii-------~~W~~rmi~~~~~~~~~~PFk~v~~hG~V~D~-------------------------------------- 651 (1066)
T PLN02381 617 DIL-------FFWVARMVMMGMQLGGDVPFRKVYLHPMIRDA-------------------------------------- 651 (1066)
T ss_pred hhh-------hhHHHHHHHHHHHhCCCCchHHheecceEECC--------------------------------------
Confidence 996 999998888887 6789999999999999865
Q ss_pred CCceeeccCcchhhcccccccccCCCCCCChhhHHh-------------------------------------hhCchhh
Q 002217 690 GDFFVMKDNPNIRLIARAHKMSKSRGNVVNPDDVVT-------------------------------------EYGADSL 732 (952)
Q Consensus 690 ~~~~vl~~~~~~~v~~~g~KMSKSkGNvV~P~eii~-------------------------------------~YGaDal 732 (952)
+|+|||||+||||||.++|+ +||||+|
T Consensus 652 ----------------~G~KMSKS~GNvIdP~~vi~~~~~~~l~~~~~~~~~~~~e~~~~~~~~~~~~p~gi~~yGADal 715 (1066)
T PLN02381 652 ----------------HGRKMSKSLGNVIDPLEVINGISLEGLHKRLEEGNLDPKELVVAKEGQKKDFPNGIAECGTDAL 715 (1066)
T ss_pred ----------------CCCCCCCCCCCCCCHHHHHhhcchhhHHHhhhccccchhhhhhHhhhccccCCCCccccChHHH
Confidence 38999999999999999999 8999999
Q ss_pred hhhhhhcCCCCCCCCCChhhHHHHHHHHHHHHHHH---hccCCCCCCCCCC-cc--CCCCCChHHHHHHHHHHHHHHHHH
Q 002217 733 RLYEMFMGPFRDSKTWNTSGIEGVHRFLGRMWRLI---VGSSLPDGTFKGG-TV--VNDEEPTLEQLCTLHKCIAKVTEE 806 (952)
Q Consensus 733 Rl~ll~~~~~~~~~~~s~~~i~~~~r~l~~l~~~~---~~~~~~~~~~~~~-~~--~~~~~~d~~~l~~l~~~i~~v~~~ 806 (952)
|||+++.++.+++++|+.+.+.++++|++++||.+ +++. . ..+.+. .. ......|+|++++++.++++++++
T Consensus 716 R~~l~~~~~~~~di~~~~~~v~~~r~f~nKlwNa~rf~~~~~-~-~~~~~~~~~~~~~~~~~DrWILskL~~~i~~v~~~ 793 (1066)
T PLN02381 716 RFALVSYTAQSDKINLDILRVVGYRQWCNKLWNAVRFAMSKL-G-DDYTPPATLSVETMPFSCKWILSVLNKAISKTVSS 793 (1066)
T ss_pred HHHHHcCCccccccCccHHHHHHHHHHHHHHHHHHHHHHhhc-c-cccCcccccCccccCHHHHHHHHHHHHHHHHHHHH
Confidence 99999999888899999999999999999999854 3221 1 111111 00 112346899999999999999999
Q ss_pred HhcCChHHHHHHHHHHHH-HHhccc----------c-------------hhHHHHHHHHHHhCCcchhHHHHHHHHcCC-
Q 002217 807 IEGTRFNTGISAMMEFIN-AAYKWE----------K-------------HPRKIIEPFILLLAPYAPHMSEELWFRLGH- 861 (952)
Q Consensus 807 ~e~~~f~~ai~~l~~f~~-~~~~~~----------~-------------~~~~vL~~l~~LLaPf~P~iaEElw~~L~~- 861 (952)
|++|+|+.|++++++|++ ++++|| . .++.+|+.+++||+|||||+|||||+.|+.
T Consensus 794 ~e~y~F~~A~~~l~~F~~~dl~d~Yie~~K~~l~~~~~~~~~~r~~a~~~L~~vL~~llrLL~PfmPfitEELw~~L~~~ 873 (1066)
T PLN02381 794 LDAYEFSDAASTVYSWWQYQFCDVFIEAIKPYFAGDNPEFASERAAAQDTLWICLDTGLRLLHPFMPFVTEELWQRLPQP 873 (1066)
T ss_pred HHhCCHHHHHHHHHHHHHHHhHHHHHHHhHHHHccCCccccHHHHHHHHHHHHHHHHHHHHHHhHhHHHHHHHHHHhhhh
Confidence 999999999999999873 333322 0 234689999999999999999999999963
Q ss_pred -----CCCccccCCCCCCccccCC
Q 002217 862 -----SNSLAYESFPKANPDYLKD 880 (952)
Q Consensus 862 -----~~sV~~~~WP~~~~~~l~~ 880 (952)
.+||+++.||++++.++++
T Consensus 874 ~~~~~~~SI~~~~~P~~~~~~~d~ 897 (1066)
T PLN02381 874 KDHTRKDSIMISEYPSAVEAWTNE 897 (1066)
T ss_pred ccCCCCCeeEeCCCCCCCchhCCH
Confidence 3699999999988765543
No 16
>PRK14900 valS valyl-tRNA synthetase; Provisional
Probab=100.00 E-value=1.5e-122 Score=1156.78 Aligned_cols=609 Identities=27% Similarity=0.491 Sum_probs=511.0
Q ss_pred ccccCCChhhhhHHHHHHHHHcCCCCCCCCCCCCCCcEEEEcCCCCCCCCCCCCchhHHHHHHHHHHHHHHHcCCccccc
Q 002217 59 VVKRAYPFHEIEPKWQSYWENNRTFRTPDEIDTSKPKFYVLDMFPYPSGAGLHVGHPLGYTATDILARLKRMQGYNVLHP 138 (952)
Q Consensus 59 ~~~~~y~~~~iE~k~~~~W~~~~~f~~~~~~~~~k~kf~i~~~~Pypng~~lHiGH~~~~~~~Di~~Ry~r~~G~~V~~~ 138 (952)
++++.|||.++|++||++|+++++|+... .+.++++|+|++||||+||. |||||++|++++|+++||+||+||+|+|+
T Consensus 14 ~~~~~y~~~~iE~~~~~~W~~~~~f~~~~-~~~~~~~f~i~~pPP~~nG~-lHiGH~~~~~~~Di~~Ry~rm~G~~vl~~ 91 (1052)
T PRK14900 14 ELAKGYEHREVEARWYPFWQERGYFHGDE-HDRTRPPFSIVLPPPNVTGS-LHLGHALTATLQDVLIRWKRMSGFNTLWL 91 (1052)
T ss_pred ccCCCCCHHHHHHHHHHHHHHCCCccCCc-ccCCCCCEEEecCCCCCCCc-chHHHHHhhHHHHHHHHHHHhcCCcccCC
Confidence 57789999999999999999999998752 24568999999999999998 99999999999999999999999999999
Q ss_pred ccccccChHHHHHHHH-----hCCC------------chHHHHHHHHHHHHHHHHcCCccccCCcccCCChhHHHHHHHH
Q 002217 139 MGWDAFGLPAEQYAIE-----TGTH------------PKITTLRNINRFRTQLKSLGFSYDWNREISTIEPAYYKWTQWI 201 (952)
Q Consensus 139 ~G~D~~Glpie~~a~~-----~g~~------------~~~~~~~~~~~~~~~l~~lgi~~Dw~~~~~T~~~~~~~~v~~~ 201 (952)
+||||||+|+|..+++ .|.+ +++|+.++++.|++||++||+++||+++|+|+||+|.++++|+
T Consensus 92 ~G~D~~Glp~e~~ve~~l~~~~~~~~~~~~~e~f~~~~~~~~~~~~~~~~~~~~~lG~s~Dw~~~~~T~d~~~~~~v~~~ 171 (1052)
T PRK14900 92 PGTDHAGIATQMIVEKELKKTEKKSRHDLGREAFLERVWAWKEQYGSRIGEQHKALGASLDWQRERFTMDEGLSRAVREV 171 (1052)
T ss_pred CCCCccchHHHHHHHHHhhhccCCChhhCCHHHHHHHHHHHHHHHHHHHHHHHHHhchheecCCCcCcCCHHHHHHHHHH
Confidence 9999999999887654 1332 3457899999999999999999999999999999999999999
Q ss_pred HHHHHHCCceeeeccccccCCCCCcccCchhhccCccccCCCCeEEeeccccchhhhhhhhHhhccCCCCCCchHHHHHH
Q 002217 202 FLQLLKRGLAYQAEVPVNWCPALGTVLANEEVVDGVSERGGHPVIRKPMRQWMLKITEYADRLLDDLDDLDWPESVKEMQ 281 (952)
Q Consensus 202 f~~L~~kGliy~~~~~v~wc~~~~t~ls~~Ev~~~~~~~~~~~~~~~~~~~~~~~i~~y~~~l~~~l~~~~~p~~~~~~~ 281 (952)
|.+|+++||||++.++|+|||.|+|+||++||++... .
T Consensus 172 F~~L~~~Gliyr~~~~v~wcp~~~T~Lsd~Ev~~~e~-~----------------------------------------- 209 (1052)
T PRK14900 172 FVRLHEEGLIYREKKLINWCPDCRTALSDLEVEHEEA-H----------------------------------------- 209 (1052)
T ss_pred HHHHHHCCCEEeccceeccCCCCCCCccHHHhcccCC-C-----------------------------------------
Confidence 9999999999999999999999999999999975310 1
Q ss_pred HhhhccCCCceEEEEEecCCCCccCcEEEEecCCcchhccccEEEECCCCccchhhccccchHHHHHHHHHHhccchhhH
Q 002217 282 RNWIGRSEGAEMDFRVLDSDGQERDIKITVYTTRPDTIFGATYLVVAPEHPLLSSLVSTTQSQNIEEYKNLASRKSDLER 361 (952)
Q Consensus 282 ~~~i~~s~~~~v~f~~~~~~~~~~~~~i~i~TT~P~Tl~g~~~v~v~p~~~y~~~~~~~~~~~~~~~y~~~~~~~~~~~~ 361 (952)
.+...+|+|++.+. +.+|+|||||||||||++||+|||++++ |.
T Consensus 210 -----~~~~~~i~f~l~~~-----~~~l~vaTTrPeTl~~~~avaV~P~~~~---------------y~----------- 253 (1052)
T PRK14900 210 -----QGELWSFAYPLADG-----SGEIVVATTRPETMLGDTAVAVHPLDPR---------------YM----------- 253 (1052)
T ss_pred -----CCeEEEEEEEecCC-----CcEEEEEECchhhhhcceeEEECCCcHH---------------HH-----------
Confidence 01223789998532 3689999999999999999999999853 32
Q ss_pred hhhhhcccccccceEEecCCCCCcccEEec-CcccCCCCCCceEecCCCChhhHHHHHHcCCceeeeecCCCCCCccccc
Q 002217 362 TELQKEKTGVFSGCYARNPASGEAIPIWVA-DYVLGSYGTGAIMAVPAHDTRDHEFALKFDISIHSVVMPDDESSSQSEK 440 (952)
Q Consensus 362 ~~~~~~~~~~l~g~~~~~P~~~~~~pv~~~-~~V~~~~GTG~V~~~Pah~~~D~~~~~~~~L~i~~vv~~~~~~~~~~~~ 440 (952)
.|.|++|.||++|+.+||+.+ .||++++|||+||++||||++||+++++||||++++|+++
T Consensus 254 ---------~L~G~~~~~Pl~~~~ipIi~d~~~vd~~~GTG~V~~~Pahd~~D~~~~~~~~L~~~~~id~~--------- 315 (1052)
T PRK14900 254 ---------ALHGKKVRHPITGRTFPIVADAILVDPKFGTGAVKVTPAHDFNDFEVGKRHGLEMITVIGPD--------- 315 (1052)
T ss_pred ---------HhcCCEEECCCCCCeeEEEecccccCcCCCCCeEEecCCCChhHHHHHHHcCCCccceECCC---------
Confidence 268999999999999999854 4899999999999999999999999999999999999875
Q ss_pred cccccceEEcccCcccccccCCCCHHHHHHHHHHHHHHcCCCcce-----------------------------------
Q 002217 441 AYTGEGLIVNSSNLISGLDINGLSCQEATSKVIEWAEKTGNGKKK----------------------------------- 485 (952)
Q Consensus 441 ~y~~~g~l~~~~~~~~~~~~~gl~~~~a~~~ii~~l~~~~~~~~~----------------------------------- 485 (952)
|.|.+.. ..+.|+...+|++.|++.|.+.|...+.
T Consensus 316 -----G~~~~~~-----~~~~Gl~~~ear~~Ii~~L~~~g~l~~~~~~~h~~~~c~R~~~~ie~~~s~qWFi~l~~~k~~ 385 (1052)
T PRK14900 316 -----GRMTAEA-----GPLAGLDRFEARKEVKRLLAEQGLDRGAKPHVLPLGRCQRSATILEPLLSDQWYVRIEPLARP 385 (1052)
T ss_pred -----cEEecCC-----cccCCcCHHHHHHHHHHHHHhCCCeecceeeeccCceeCCCCceEEEEeccceeeehHHHHHH
Confidence 4444332 2488999999999999999998875431
Q ss_pred ---------ec---------c-----cCCceeecccCCCCcccCceEeCCCCceeecCCCCcCCCCCcccccCCCCCCCC
Q 002217 486 ---------VN---------Y-----KLRDWLFARQRYWGEPIPVVFLDGTGETVPLHEAELPLTLPELDDFTPTGTGEP 542 (952)
Q Consensus 486 ---------~~---------~-----~l~DW~ISRQR~WG~PIPv~~~~~~~~~~~~~~~~l~v~lp~~~~~~~~G~~~~ 542 (952)
+. | +++||||||||+||+|||+|||++ |.+++ ..+ .
T Consensus 386 ~~~~v~~~~~~~~P~~~~~~~~~wl~~l~DW~ISRqr~WG~PIP~w~~~~-~~~~v-~~~-~------------------ 444 (1052)
T PRK14900 386 AIEAVEQGRTRFIPEQWTNTYMAWMRNIHDWCISRQLWWGHQIPAWYCPD-GHVTV-ARE-T------------------ 444 (1052)
T ss_pred HHHHHhcCCcEEEChHHHHHHHHHHhcCccceEEeecCCCceeCeEEcCC-CcEEe-ccc-c------------------
Confidence 11 1 589999999999999999999975 43322 111 0
Q ss_pred CCccccccccccccCCCCC-ccccCCCcccccccc-chhheecCCCCchhHhhhhhhhcCCCceeEecCchhhHHHHHHH
Q 002217 543 PLSKAVSWVQTTEHSSGKP-ARRETSTMPQWAGSC-WYYLRFMDPKNSKELVDKTKERYWSPVDVYVGGAEHAVLHLLYA 620 (952)
Q Consensus 543 ~l~~~~~w~~~~~~~~g~~-~~re~d~lD~WfdSs-wy~~~~~~p~~~~~~~~~~~~~~w~PvDlyv~G~D~~~~HLly~ 620 (952)
...||.||+. ++|++|||||||||+ ||+..+++|.+... .++|||+|+|++|+|++
T Consensus 445 ---------~~~~~~~~~~~~~~~~dVlDvWFdS~l~y~s~~g~p~~~~~------~~~~~P~d~~~~G~Dii------- 502 (1052)
T PRK14900 445 ---------PEACSTCGKAELRQDEDVLDTWFSSGLWPFSTMGWPEQTDT------LRTFYPTSVMETGHDII------- 502 (1052)
T ss_pred ---------cccccccCccceecCCceEEEEEcCChHHHHHHcCCCchHH------HHhhCCchhhcccccHH-------
Confidence 1347788765 899999999999998 99999999976432 25688999999999996
Q ss_pred HHHHHHHHHhcC-cCCCCcchhhhhhceeccccceeEEecCCCccccCCCCCcccccccccCccccccccCCceeeccCc
Q 002217 621 RFWHKVLYDIGV-VSTKEPFKCVINQGIILGEMQYMVCKDVDGSYISADSTDTLGEYEQESIPEEKVMKSGDFFVMKDNP 699 (952)
Q Consensus 621 Rfw~~~L~~~~~-~~~~~PFk~l~~~G~vl~~~~y~~~~d~~g~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~vl~~~~ 699 (952)
|||+.+|+.+|+ ..+..||++|++||||+++
T Consensus 503 ~~W~a~~l~~~~~~~~~~Pfk~V~~hG~v~d~------------------------------------------------ 534 (1052)
T PRK14900 503 FFWVARMMMMGLHFMGEVPFRTVYLHPMVRDE------------------------------------------------ 534 (1052)
T ss_pred hHHHHHHHHHHHHhcCCCccceeEecccEECC------------------------------------------------
Confidence 899888888775 4568999999999999863
Q ss_pred chhhcccccccccCCCCCCChhhHHhhhCchhhhhhhhhcCCCCCCCCCChhhHHHHHHHHHHHHHHH---hccCCCCCC
Q 002217 700 NIRLIARAHKMSKSRGNVVNPDDVVTEYGADSLRLYEMFMGPFRDSKTWNTSGIEGVHRFLGRMWRLI---VGSSLPDGT 776 (952)
Q Consensus 700 ~~~v~~~g~KMSKSkGNvV~P~eii~~YGaDalRl~ll~~~~~~~~~~~s~~~i~~~~r~l~~l~~~~---~~~~~~~~~ 776 (952)
+|+|||||+||||+|.++|++||||+||||+++.++.++|.+|+++.+++.++|++++||.. ..+ + ..
T Consensus 535 ------~G~KMSKSkGNvIdP~dvIe~yGaDalR~~L~~~~~~g~D~~fs~~~l~~~~~f~nkl~N~~R~~~~~-~--~~ 605 (1052)
T PRK14900 535 ------KGQKMSKTKGNVIDPLVITEQYGADALRFTLAALTAQGRDIKLAKERIEGYRAFANKLWNASRFALMN-L--SG 605 (1052)
T ss_pred ------CCCCccCCCCCCCCHHHHHHHhCcHHHHHHHHhcCCCCCCCcccHHHHHHHHHHHHHHHHHHHHHHHh-h--hc
Confidence 27999999999999999999999999999999989999999999999999889999988732 211 1 11
Q ss_pred CCC-CccC---CCCCChHHHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHH-HHhcccc--------------------
Q 002217 777 FKG-GTVV---NDEEPTLEQLCTLHKCIAKVTEEIEGTRFNTGISAMMEFIN-AAYKWEK-------------------- 831 (952)
Q Consensus 777 ~~~-~~~~---~~~~~d~~~l~~l~~~i~~v~~~~e~~~f~~ai~~l~~f~~-~~~~~~~-------------------- 831 (952)
+.. +... .....|.|++++++.++++++++|++|+|+.|++.+|+|++ ++.+||.
T Consensus 606 ~~~~~~~~~~~~~~~~D~wils~l~~~i~~v~~~~e~y~f~~A~~~i~~f~~~~~~n~Yie~~k~~l~~~~~~~~~~~~~ 685 (1052)
T PRK14900 606 YQERGEDPARLARTPADRWILARLQRAVNETVEALEAFRFNDAANAVYAFVWHELCDWYIELAKEALASEDPEARRSVQA 685 (1052)
T ss_pred cCcccccccccccCHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhhHHHHHhccHhhccCCHHHHHHHHH
Confidence 211 1111 12345889999999999999999999999999999999985 4443321
Q ss_pred hhHHHHHHHHHHhCCcchhHHHHHHHHcCC-------CCCccccCCCCCCc
Q 002217 832 HPRKIIEPFILLLAPYAPHMSEELWFRLGH-------SNSLAYESFPKANP 875 (952)
Q Consensus 832 ~~~~vL~~l~~LLaPf~P~iaEElw~~L~~-------~~sV~~~~WP~~~~ 875 (952)
.+.++|+.+++||+|||||+|||||+.|+. .+||+++.||++++
T Consensus 686 ~L~~~L~~l~~LLaPfmP~~aEeiw~~L~~~~~~~~~~~SV~~~~wP~~~~ 736 (1052)
T PRK14900 686 VLVHCLQTSYRLLHPFMPFITEELWHVLRAQVGASAWADSVLAAEYPRKGE 736 (1052)
T ss_pred HHHHHHHHHHHHHHhHhHHHHHHHHHHhccccccCCCCCceeecCCCCCCc
Confidence 234789999999999999999999999963 26899999999875
No 17
>PLN02943 aminoacyl-tRNA ligase
Probab=100.00 E-value=4.2e-122 Score=1145.67 Aligned_cols=629 Identities=25% Similarity=0.422 Sum_probs=497.9
Q ss_pred cccccCCChhhhhHHHHHHHHHcCCCCCCCCCCCCCCcEEEEcCCCCCCCCCCCCchhHHHHHHHHHHHHHHHcCCcccc
Q 002217 58 QVVKRAYPFHEIEPKWQSYWENNRTFRTPDEIDTSKPKFYVLDMFPYPSGAGLHVGHPLGYTATDILARLKRMQGYNVLH 137 (952)
Q Consensus 58 ~~~~~~y~~~~iE~k~~~~W~~~~~f~~~~~~~~~k~kf~i~~~~Pypng~~lHiGH~~~~~~~Di~~Ry~r~~G~~V~~ 137 (952)
-++++.|||.+ |++||++|+++++|++.. +.++++|+|+++|||+||. |||||+++++++|+++||+||+||+|+|
T Consensus 55 ~~~~~~y~~~~-E~~~~~~W~~~~~f~~~~--~~~~~~f~i~~pPP~~tG~-lHiGHa~~~~~~D~~~Ry~rm~G~~vl~ 130 (958)
T PLN02943 55 PETAKSFDFTS-EERIYNWWESQGYFKPNF--DRGGDPFVIPMPPPNVTGS-LHMGHAMFVTLEDIMVRYNRMKGRPTLW 130 (958)
T ss_pred cccCCCCChhh-hHHHHHHHHHCCCcccCc--ccCCCCEEEecCCCCCCCc-hhHHHHHHHHHHHHHHHHHHhcCCeeec
Confidence 36889999999 999999999999999764 3467889999999999998 9999999999999999999999999999
Q ss_pred cccccccChHHHHHHHH----hCCC------------chHHHHHHHHHHHHHHHHcCCccccCCcccCCChhHHHHHHHH
Q 002217 138 PMGWDAFGLPAEQYAIE----TGTH------------PKITTLRNINRFRTQLKSLGFSYDWNREISTIEPAYYKWTQWI 201 (952)
Q Consensus 138 ~~G~D~~Glpie~~a~~----~g~~------------~~~~~~~~~~~~~~~l~~lgi~~Dw~~~~~T~~~~~~~~v~~~ 201 (952)
++||||||+|+|..+++ .|++ +.+|++++++.|++||++||+++||+++|+|+||.|.++|+|+
T Consensus 131 ~~G~D~~Gl~~e~~vek~l~~~~~~~~~~~re~f~~~~~~~~~~~~~~~~~~~~~lG~s~Dw~~~~~T~d~~~~~~v~~~ 210 (958)
T PLN02943 131 IPGTDHAGIATQLVVEKMLASEGIKRTDLGRDEFTKRVWEWKEKYGGTITNQIKRLGASCDWSRERFTLDEQLSRAVVEA 210 (958)
T ss_pred CCCCCcccchhHHHHHHHHHHcCCChhhCCHHHHHHHHHHHHHHHHHHHHHHHHHhCcceecCCCcccCCHHHHHHHHHH
Confidence 99999999999887654 3654 3467789999999999999999999999999999999999999
Q ss_pred HHHHHHCCceeeeccccccCCCCCcccCchhhccCccccCCCCeEEeeccccchhhhhhhhHhhccCCCCCCchHHHHHH
Q 002217 202 FLQLLKRGLAYQAEVPVNWCPALGTVLANEEVVDGVSERGGHPVIRKPMRQWMLKITEYADRLLDDLDDLDWPESVKEMQ 281 (952)
Q Consensus 202 f~~L~~kGliy~~~~~v~wc~~~~t~ls~~Ev~~~~~~~~~~~~~~~~~~~~~~~i~~y~~~l~~~l~~~~~p~~~~~~~ 281 (952)
|.+|+++||||++.++|+|||.|+|+||++||++. +.
T Consensus 211 F~~l~~~Gliyr~~~~V~wcp~~~Tals~~Evey~--e~----------------------------------------- 247 (958)
T PLN02943 211 FVRLHEKGLIYQGSYMVNWSPNLQTAVSDLEVEYS--EE----------------------------------------- 247 (958)
T ss_pred HHHHHHCCCEEecCceeccCCCCCCCcCHHHhhcc--cc-----------------------------------------
Confidence 99999999999999999999999999999999753 11
Q ss_pred HhhhccCCCceEEEEEecCCCCccCcEEEEecCCcchhccccEEEECCCCccchhhccccchHHHHHHHHHHhccchhhH
Q 002217 282 RNWIGRSEGAEMDFRVLDSDGQERDIKITVYTTRPDTIFGATYLVVAPEHPLLSSLVSTTQSQNIEEYKNLASRKSDLER 361 (952)
Q Consensus 282 ~~~i~~s~~~~v~f~~~~~~~~~~~~~i~i~TT~P~Tl~g~~~v~v~p~~~y~~~~~~~~~~~~~~~y~~~~~~~~~~~~ 361 (952)
.+..++|+|++.+.+ +.+|+|||||||||+|++||||||+++ +|.+
T Consensus 248 -----~~~~~~i~f~l~~~~----~~~l~vaTTrPeTl~~~~avavnP~d~---------------ry~~---------- 293 (958)
T PLN02943 248 -----PGTLYYIKYRVAGGS----EDFLTIATTRPETLFGDVAIAVNPEDD---------------RYSK---------- 293 (958)
T ss_pred -----cccEEEEEEEEcCCC----CCEEEEEeCChhhhhcceEEEECCCCH---------------HHHH----------
Confidence 134468999995421 258999999999999999999999985 2332
Q ss_pred hhhhhcccccccceEEecCCC-CCcccEEecCcccCCCCCCceEecCCCChhhHHHHHHcCCceeeeecCCCCCCccccc
Q 002217 362 TELQKEKTGVFSGCYARNPAS-GEAIPIWVADYVLGSYGTGAIMAVPAHDTRDHEFALKFDISIHSVVMPDDESSSQSEK 440 (952)
Q Consensus 362 ~~~~~~~~~~l~g~~~~~P~~-~~~~pv~~~~~V~~~~GTG~V~~~Pah~~~D~~~~~~~~L~i~~vv~~~~~~~~~~~~ 440 (952)
|.|.++.||++ |+++||+.++||++++|||+||++||||++||+++++||||++++++++ |.+++..+
T Consensus 294 ----------l~g~~~~~Pl~~~~~ipii~~~~V~~~~GTG~V~~~Pahd~~D~~~~~~~~L~~~~~id~~-G~~~~~~g 362 (958)
T PLN02943 294 ----------YIGKMAIVPMTYGRHVPIIADRYVDKDFGTGVLKISPGHDHNDYLLARKLGLPILNVMNKD-GTLNEVAG 362 (958)
T ss_pred ----------HcCCEEECCCcCCCeeeEEecCcccCCCCCceEEeCCCCChHHHHHHHHcCCCceeeeCCC-ceeeccCC
Confidence 46899999997 9999999999999999999999999999999999999999999999876 44433222
Q ss_pred cc------------cccceEEcccCc--------------------ccccccCCCCHHHHHHHHHHHHHHcCCC------
Q 002217 441 AY------------TGEGLIVNSSNL--------------------ISGLDINGLSCQEATSKVIEWAEKTGNG------ 482 (952)
Q Consensus 441 ~y------------~~~g~l~~~~~~--------------------~~~~~~~gl~~~~a~~~ii~~l~~~~~~------ 482 (952)
.| ...|.++..... +|+++++ +-.+.+++++......
T Consensus 363 ~~~~ear~~iv~~L~~~g~l~~~e~~~~~~p~c~R~~~~Ie~~~~~QWFi~~~-----~l~~~~l~~v~~~~i~~~P~~~ 437 (958)
T PLN02943 363 LYWFEAREKLWSDLEETGLAVKKEPHTLRVPRSQRGGEVIEPLVSKQWFVTME-----PLAEKALKAVENGELTIIPERF 437 (958)
T ss_pred ccHHHHHHHHHHHHHHCCCeeeeeeeecCCCeeCCCCcEeEEEeccceeEEHH-----HHHHHHHHHHhcCCcEEEChHH
Confidence 22 112333221110 1222211 1222223332211000
Q ss_pred ccee---cccCCceeecccCCCCcccCceEe--CCCCceeecCCCCcCCCCCcccccCCCCCCCCCCccccccccccccC
Q 002217 483 KKKV---NYKLRDWLFARQRYWGEPIPVVFL--DGTGETVPLHEAELPLTLPELDDFTPTGTGEPPLSKAVSWVQTTEHS 557 (952)
Q Consensus 483 ~~~~---~~~l~DW~ISRQR~WG~PIPv~~~--~~~~~~~~~~~~~l~v~lp~~~~~~~~G~~~~~l~~~~~w~~~~~~~ 557 (952)
++.. .-+++||||||||+||+|||+|+| ++|+....+..+. .+++...|+.
T Consensus 438 ~~~~~~wl~~l~DWcISRQr~WG~pIP~w~~~~~~~~~~~~v~~~~------------------------~~~~~~~~~~ 493 (958)
T PLN02943 438 EKIYNHWLSNIKDWCISRQLWWGHRIPVWYIVGKDCEEDYIVARSA------------------------EEALEKAREK 493 (958)
T ss_pred HHHHHHHHhcCccceEEEecCCCCccCceeccccCCCceEEecCcH------------------------HHHHHHhhhh
Confidence 0000 016899999999999999999998 4555322211110 1222233556
Q ss_pred CCCC--ccccCCCcccccccc-chhheecCCCCchhHhhhhhhhcCCCceeEecCchhhHHHHHHHHHHHHHHHHhcCc-
Q 002217 558 SGKP--ARRETSTMPQWAGSC-WYYLRFMDPKNSKELVDKTKERYWSPVDVYVGGAEHAVLHLLYARFWHKVLYDIGVV- 633 (952)
Q Consensus 558 ~g~~--~~re~d~lD~WfdSs-wy~~~~~~p~~~~~~~~~~~~~~w~PvDlyv~G~D~~~~HLly~Rfw~~~L~~~~~~- 633 (952)
||.. ++|++|||||||||+ |||..+++|....+ ..++|||+|++++|+||+ |||+..|..+|+.
T Consensus 494 ~g~~~~~~~~~DVlDtWFdS~l~p~s~lgwp~~~~~-----~~~~~yP~dl~~~G~Dii-------~fW~a~m~~~~~~~ 561 (958)
T PLN02943 494 YGKDVEIYQDPDVLDTWFSSALWPFSTLGWPDVSAE-----DFKKFYPTTVLETGHDIL-------FFWVARMVMMGIEF 561 (958)
T ss_pred cCCchheeecCceEEEEEcCccchHHhcCCCccChH-----HHhccCCCeEEEEeehHH-------HHHHHHHHHhhhhh
Confidence 7765 789999999999998 99999999874321 236789999999999996 9999888778774
Q ss_pred CCCCcchhhhhhceeccccceeEEecCCCccccCCCCCcccccccccCccccccccCCceeeccCcchhhcccccccccC
Q 002217 634 STKEPFKCVINQGIILGEMQYMVCKDVDGSYISADSTDTLGEYEQESIPEEKVMKSGDFFVMKDNPNIRLIARAHKMSKS 713 (952)
Q Consensus 634 ~~~~PFk~l~~~G~vl~~~~y~~~~d~~g~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~vl~~~~~~~v~~~g~KMSKS 713 (952)
.++.||+++++||+|++. +|+|||||
T Consensus 562 ~~~~Pf~~v~~hg~v~~~------------------------------------------------------~G~KMSKS 587 (958)
T PLN02943 562 TGTVPFSYVYLHGLIRDS------------------------------------------------------QGRKMSKT 587 (958)
T ss_pred cCCCChheEEEeccEECC------------------------------------------------------CCCcccCc
Confidence 467899999999999753 38999999
Q ss_pred CCCCCChhhHHhhhCchhhhhhhhhcCCCCCCCCCChhhHHHHHHHHHHHHH---HHhccCCCCC-----------CCCC
Q 002217 714 RGNVVNPDDVVTEYGADSLRLYEMFMGPFRDSKTWNTSGIEGVHRFLGRMWR---LIVGSSLPDG-----------TFKG 779 (952)
Q Consensus 714 kGNvV~P~eii~~YGaDalRl~ll~~~~~~~~~~~s~~~i~~~~r~l~~l~~---~~~~~~~~~~-----------~~~~ 779 (952)
+||+|+|.++|++||||++|||+++.+ ++++.+|+++.+.+..++++++|| |++++..... .+..
T Consensus 588 ~GN~i~p~~~i~~ygaDalR~~l~~~~-~~~d~~fs~~~l~~~~~~~~kl~N~~rf~~~~l~~~~~~~~~~~~~~~~~~~ 666 (958)
T PLN02943 588 LGNVIDPLDTIKEFGTDALRFTLALGT-AGQDLNLSTERLTSNKAFTNKLWNAGKFVLQNLPSQSDTSAWEHILACKFDK 666 (958)
T ss_pred CCCCCCHHHHHHhcCChHHHHHHHhCC-CCCCccccHHHHHHHHHHHHHHHHHHHHHHhccccccccccccccccccCCc
Confidence 999999999999999999999999755 589999999999999999999998 5544321100 0111
Q ss_pred Cc-cCCCCCChHHHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHH-HHHhcccc---------------------hhHHH
Q 002217 780 GT-VVNDEEPTLEQLCTLHKCIAKVTEEIEGTRFNTGISAMMEFI-NAAYKWEK---------------------HPRKI 836 (952)
Q Consensus 780 ~~-~~~~~~~d~~~l~~l~~~i~~v~~~~e~~~f~~ai~~l~~f~-~~~~~~~~---------------------~~~~v 836 (952)
.. .......|+|++++++.++++++++|++|+|+.|++++++|+ +++.+||. .+.++
T Consensus 667 ~~~~~~l~~~D~wilskl~~~i~~v~~~~e~y~f~~A~~~i~~f~~~~~~d~YiE~~Kprl~~~~~~~~~~~a~~vL~~v 746 (958)
T PLN02943 667 EESLLSLPLPECWVVSKLHELIDSVTTSYDKYFFGDVGREIYDFFWSDFADWYIEASKTRLYHSGDNSALSRAQAVLLYV 746 (958)
T ss_pred cccccccCHHHHHHHHHHHHHHHHHHHHHHhcChhHHHHHHHHHHHHHHHHHHHHhccHhhccCCchHHHHHHHHHHHHH
Confidence 00 001234689999999999999999999999999999999997 45554431 12368
Q ss_pred HHHHHHHhCCcchhHHHHHHHHcCC-CCCccccCCCCCC
Q 002217 837 IEPFILLLAPYAPHMSEELWFRLGH-SNSLAYESFPKAN 874 (952)
Q Consensus 837 L~~l~~LLaPf~P~iaEElw~~L~~-~~sV~~~~WP~~~ 874 (952)
++.+++||+|||||+|||||+.|+. .+||+.++||+++
T Consensus 747 l~~ll~LL~PfmPfitEELwq~L~~~~~si~~~~wP~~~ 785 (958)
T PLN02943 747 FENILKLLHPFMPFVTEELWQALPYRKEALIVSPWPQTS 785 (958)
T ss_pred HHHHHHHHhCcchhHHHHHHHHcCCCCCceeecCCCCCc
Confidence 9999999999999999999999974 4599999999975
No 18
>PRK13208 valS valyl-tRNA synthetase; Reviewed
Probab=100.00 E-value=1.1e-122 Score=1144.64 Aligned_cols=640 Identities=29% Similarity=0.480 Sum_probs=523.9
Q ss_pred ccccCCChhhhhHHHHHHHHHcCCCCCCCCCCCCCCcEEEEcCCCCCCCCCCCCchhHHHHHHHHHHHHHHHcCCccccc
Q 002217 59 VVKRAYPFHEIEPKWQSYWENNRTFRTPDEIDTSKPKFYVLDMFPYPSGAGLHVGHPLGYTATDILARLKRMQGYNVLHP 138 (952)
Q Consensus 59 ~~~~~y~~~~iE~k~~~~W~~~~~f~~~~~~~~~k~kf~i~~~~Pypng~~lHiGH~~~~~~~Di~~Ry~r~~G~~V~~~ 138 (952)
.++..||+.++|++||++|+++++|+... +.++++|+|++||||+||. |||||+++++++|+++||+||+||+|+++
T Consensus 5 ~~~~~~~~~~~E~~~~~~W~~~~~f~~~~--~~~~~~f~i~~ppPy~nG~-lHiGH~~~~~~~D~~~R~~r~~G~~v~~~ 81 (800)
T PRK13208 5 ELPKKYDPEELEEKWQKIWEEEGTYKFDP--DERKPVYSIDTPPPTVSGS-LHIGHVFSYTHTDFIARYQRMRGYNVFFP 81 (800)
T ss_pred CCCCCCCHHHHHHHHHHHHHHCCCccccc--ccCCCcEEEecCcCCCCCC-ccHHHHHhHHHHHHHHHHHHcCCCcccCC
Confidence 35678999999999999999999999764 2357899999999999998 99999999999999999999999999999
Q ss_pred ccccccChHHHHHHHH-hCCCch------------HHHHHHHHHHHHHHHHcCCccccCCcccCCChhHHHHHHHHHHHH
Q 002217 139 MGWDAFGLPAEQYAIE-TGTHPK------------ITTLRNINRFRTQLKSLGFSYDWNREISTIEPAYYKWTQWIFLQL 205 (952)
Q Consensus 139 ~G~D~~Glpie~~a~~-~g~~~~------------~~~~~~~~~~~~~l~~lgi~~Dw~~~~~T~~~~~~~~v~~~f~~L 205 (952)
+||||||+|||.+|++ .|++++ ++++++++.|+++|++||+++||+++++|+||.|+++++|+|.+|
T Consensus 82 ~G~D~~Glpie~~~ek~~g~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~lg~s~Dw~~~~~T~d~~~~~~v~~~f~~L 161 (800)
T PRK13208 82 QGWDDNGLPTERKVEKYYGIRKDDISREEFIELCRELTDEDEKKFRELWRRLGLSVDWSLEYQTISPEYRRISQKSFLDL 161 (800)
T ss_pred CCcCCCcchHHHHHHHHhCCCcccCCHHHHHHHHHHHHHHHHHHHHHHHHHhCeeeccCCCcccCCHHHHHHHHHHHHHH
Confidence 9999999999999988 588765 599999999999999999999999999999999999999999999
Q ss_pred HHCCceeeeccccccCCCCCcccCchhhccCccccCCCCeEEeeccccchhhhhhhhHhhccCCCCCCchHHHHHHHhhh
Q 002217 206 LKRGLAYQAEVPVNWCPALGTVLANEEVVDGVSERGGHPVIRKPMRQWMLKITEYADRLLDDLDDLDWPESVKEMQRNWI 285 (952)
Q Consensus 206 ~~kGliy~~~~~v~wc~~~~t~ls~~Ev~~~~~~~~~~~~~~~~~~~~~~~i~~y~~~l~~~l~~~~~p~~~~~~~~~~i 285 (952)
+++|+||++.++|+|||.|+|+||++||++. ++.
T Consensus 162 ~~~Gliy~~~~~v~wcp~~~t~Lsd~ev~~~--~~~-------------------------------------------- 195 (800)
T PRK13208 162 YKKGLIYRAEAPVLWCPRCETAIAQAEVEYR--ERE-------------------------------------------- 195 (800)
T ss_pred HHCCCeeecCcccccCCCCCCccchhhhccc--ccc--------------------------------------------
Confidence 9999999999999999999999999999742 221
Q ss_pred ccCCCceEEEEEecCCCCccCcEEEEecCCcchhccccEEEECCCCccchhhccccchHHHHHHHHHHhccchhhHhhhh
Q 002217 286 GRSEGAEMDFRVLDSDGQERDIKITVYTTRPDTIFGATYLVVAPEHPLLSSLVSTTQSQNIEEYKNLASRKSDLERTELQ 365 (952)
Q Consensus 286 ~~s~~~~v~f~~~~~~~~~~~~~i~i~TT~P~Tl~g~~~v~v~p~~~y~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~~ 365 (952)
+..++|+|++.+ +.+|+|||||||||+|++||+|||+++. |.
T Consensus 196 --~~~~~ikf~~~~------~~~l~v~TtrPeTl~g~~ai~v~p~~~~---------------~~--------------- 237 (800)
T PRK13208 196 --GKLNYIKFPVED------GEEIEIATTRPELLPACVAVVVHPDDER---------------YK--------------- 237 (800)
T ss_pred --ceEEEEEEEecC------CCEEEEEeCCcchhhhCeEEEECCCchH---------------HH---------------
Confidence 233589999852 2589999999999999999999999853 32
Q ss_pred hcccccccceEEecCCCCCcccEEecCcccCCCCCCceEecCCCChhhHHHHHHcCCceeeeecCCCCCCcccccccccc
Q 002217 366 KEKTGVFSGCYARNPASGEAIPIWVADYVLGSYGTGAIMAVPAHDTRDHEFALKFDISIHSVVMPDDESSSQSEKAYTGE 445 (952)
Q Consensus 366 ~~~~~~l~g~~~~~P~~~~~~pv~~~~~V~~~~GTG~V~~~Pah~~~D~~~~~~~~L~i~~vv~~~~~~~~~~~~~y~~~ 445 (952)
.|.|+++.||++++++||+.++||++++|||+||+||+||++||+++++||||++++|+.+
T Consensus 238 -----~l~g~~~~~P~~~~~ipii~~~~V~~~~GTG~V~~~p~hd~~D~~~~~~~~l~~~~~i~~~-------------- 298 (800)
T PRK13208 238 -----HLVGKTAIVPLFGVEVPILADPLVDPDFGTGAVMICTFGDKTDVTWWRELNLPTRIIIDED-------------- 298 (800)
T ss_pred -----HhcCCEEEcCCCCCcceEECCCccCCCCCcceEEeCCCCCHHHHHHHHHcCCCcccccCCC--------------
Confidence 2589999999999999999999999999999999999999999999999999999999764
Q ss_pred ceEEcccCcccccccCCCCHHHHHHHHHHHHHHcCCCcce----------------------ecc---------------
Q 002217 446 GLIVNSSNLISGLDINGLSCQEATSKVIEWAEKTGNGKKK----------------------VNY--------------- 488 (952)
Q Consensus 446 g~l~~~~~~~~~~~~~gl~~~~a~~~ii~~l~~~~~~~~~----------------------~~~--------------- 488 (952)
|.+.... ..++|+.+.+|+++|++.|++.|.+.+. .+|
T Consensus 299 G~~~~~~-----g~~~G~~~~~a~~~i~~~L~~~g~~~~~~~~~~~~p~~~r~~~~v~~~~~~qwfl~~~~~~~~~~~~~ 373 (800)
T PRK13208 299 GRMTEAA-----GKLAGLTIEEARKKIVEDLKSGGLLGKQEPIKHNVKFCERCDTPLEILVTRQWFIKVLDLKEELLERG 373 (800)
T ss_pred ceEecCC-----cccCCCCHHHHHHHHHHHHHhCCCeeceeeeeccCCccCCCCCEEEEeccceeeEeCHHHHHHHHHhh
Confidence 4444221 3589999999999999999998874321 011
Q ss_pred -------------------cCC-ceeecccCCCCcccCceEeCCCCceeecCCCCcCCCCCcccccCCCCCCCCCCcccc
Q 002217 489 -------------------KLR-DWLFARQRYWGEPIPVVFLDGTGETVPLHEAELPLTLPELDDFTPTGTGEPPLSKAV 548 (952)
Q Consensus 489 -------------------~l~-DW~ISRQR~WG~PIPv~~~~~~~~~~~~~~~~l~v~lp~~~~~~~~G~~~~~l~~~~ 548 (952)
+++ ||||||||+||+|||+|+|++||.+++..++.+|+. |.. ...
T Consensus 374 ~~~~~~P~~~~~~~~~~l~~~~~DW~ISRqr~WG~pIP~~~~~~~g~~~~~~~~~l~~~-~~~--------------d~~ 438 (800)
T PRK13208 374 KEINWYPEHMRVRLENWIEGLNWDWCISRQRYFGTPIPVWYCKDCGHPILPDEEDLPVD-PTK--------------DEP 438 (800)
T ss_pred cCcEEECHHHHHHHHHHHHhcCCCceeeeccccCCcceEEEeCCCCCeecCchhhhccC-chh--------------hcc
Confidence 234 999999999999999999999886544333444332 100 001
Q ss_pred ccccccccCCC-CCccccCCCccccccccc-hhheecCCCCchhHhhhhhhhcCCCceeEecCchhhHHHHHHHHHHHHH
Q 002217 549 SWVQTTEHSSG-KPARRETSTMPQWAGSCW-YYLRFMDPKNSKELVDKTKERYWSPVDVYVGGAEHAVLHLLYARFWHKV 626 (952)
Q Consensus 549 ~w~~~~~~~~g-~~~~re~d~lD~WfdSsw-y~~~~~~p~~~~~~~~~~~~~~w~PvDlyv~G~D~~~~HLly~Rfw~~~ 626 (952)
. ...|+.|| ..++|++|||||||||+| ++....+|.+.. ..++|||+|+|++|+||+ |||+..
T Consensus 439 ~--~~~~~~~g~~~~~~~~dvlD~WfdS~~~~~~~~~~~~~~~------~~~~~~P~d~~~~G~Di~-------~~w~~~ 503 (800)
T PRK13208 439 P--GYKCPQCGSPGFEGETDVMDTWATSSITPLIVTGWERDED------LFEKVFPMDLRPQGHDII-------RTWLFY 503 (800)
T ss_pred c--cccccccCCcCEEecCCEEEEEEeCCchHHHHhCCCCChh------hhhhcCCceEEEeecchh-------hhHHHH
Confidence 1 13578888 469999999999999984 444445565432 236789999999999997 666443
Q ss_pred HHHhc-CcCCCCcchhhhhhceeccccceeEEecCCCccccCCCCCcccccccccCccccccccCCceeeccCcchhhcc
Q 002217 627 LYDIG-VVSTKEPFKCVINQGIILGEMQYMVCKDVDGSYISADSTDTLGEYEQESIPEEKVMKSGDFFVMKDNPNIRLIA 705 (952)
Q Consensus 627 L~~~~-~~~~~~PFk~l~~~G~vl~~~~y~~~~d~~g~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~vl~~~~~~~v~~ 705 (952)
++..+ ++.+.+||+++++||||++.
T Consensus 504 ~l~~~~~~~~~~Pf~~v~~hg~v~~~------------------------------------------------------ 529 (800)
T PRK13208 504 TILRAYLLTGKLPWKNIMISGMVLDP------------------------------------------------------ 529 (800)
T ss_pred HHHHHHHhcCCCCcceEEEeeEEECC------------------------------------------------------
Confidence 33222 34557899999999999753
Q ss_pred cccccccCCCCCCChhhHHhhhCchhhhhhhhhcCCCCCCCCCChhhHHHHHHHHHHHHHHHhccC-CCCCCCCCCccCC
Q 002217 706 RAHKMSKSRGNVVNPDDVVTEYGADSLRLYEMFMGPFRDSKTWNTSGIEGVHRFLGRMWRLIVGSS-LPDGTFKGGTVVN 784 (952)
Q Consensus 706 ~g~KMSKSkGNvV~P~eii~~YGaDalRl~ll~~~~~~~~~~~s~~~i~~~~r~l~~l~~~~~~~~-~~~~~~~~~~~~~ 784 (952)
+|+|||||+||+|+|.+++++||||++|||++ .++++++.+|+++.+.++.++++++||++.... ... .........
T Consensus 530 ~G~KMSKS~GN~i~p~~~i~~yg~D~lR~~l~-~~~~~~d~~fs~~~~~~~~~~l~kl~N~~r~~~~~~~-~~~~~~~~~ 607 (800)
T PRK13208 530 DGKKMSKSKGNVVTPEELLEKYGADAVRYWAA-SARLGSDTPFDEKQVKIGRRLLTKLWNASRFVLHFSA-DPEPDKAEV 607 (800)
T ss_pred CCCCCCCCCCCCCCHHHHHHHcCccHHHHHHh-cCCCCCCceecHHHHHHHHHHHHHHHHHHHHHHhccc-ccccCcccc
Confidence 38999999999999999999999999999999 888999999999999999999999998752111 110 000000011
Q ss_pred CCCChHHHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHH-Hhccc----------c-----------hhHHHHHHHHH
Q 002217 785 DEEPTLEQLCTLHKCIAKVTEEIEGTRFNTGISAMMEFINA-AYKWE----------K-----------HPRKIIEPFIL 842 (952)
Q Consensus 785 ~~~~d~~~l~~l~~~i~~v~~~~e~~~f~~ai~~l~~f~~~-~~~~~----------~-----------~~~~vL~~l~~ 842 (952)
....|+|++++++.++++++++|++|+|++|++.+++|++. +.+|| . .+.++|+.+++
T Consensus 608 ~~~~D~~il~~l~~~i~~v~~~~e~~~f~~A~~~i~~f~~~~~~n~Yie~~k~~~~~~~~~~~~~~~~~~l~~~l~~l~~ 687 (800)
T PRK13208 608 LEPLDRWILAKLAKVVEKATEALENYDFAKALEEIESFFWHVFCDDYLELVKSRAYGEDEEEEQKSARYTLYTVLDTLLR 687 (800)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHhhHHHHHHhhHHhcCCCCcHHHHHHHHHHHHHHHHHHH
Confidence 23457899999999999999999999999999999999975 43332 0 23478999999
Q ss_pred HhCCcchhHHHHHHHHcCCCCCccccCCCCCCccccCC---CceEEeEEEeceeEEE
Q 002217 843 LLAPYAPHMSEELWFRLGHSNSLAYESFPKANPDYLKD---STIVLPIQINGKTRGT 896 (952)
Q Consensus 843 LLaPf~P~iaEElw~~L~~~~sV~~~~WP~~~~~~l~~---~~i~l~vqVngk~r~~ 896 (952)
||+|||||+|||||+.|+ .+||+.+.||++++..+++ +.+++++++++++|..
T Consensus 688 LLaPf~P~iaEelw~~L~-~~si~~~~wP~~~~~~~~~~~~~~~~~v~~ii~~iR~~ 743 (800)
T PRK13208 688 LLAPFLPFITEEVWSWLY-GGSVHRASWPEPDEELIDEEDEELGELAKEILSAVRKY 743 (800)
T ss_pred HhcccchhhHHHHHHhCC-CCceEeccCCCCCcccccHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999998 6799999999998766643 3445556666655543
No 19
>TIGR00422 valS valyl-tRNA synthetase. The valyl-tRNA synthetase (ValS) is a class I amino acyl-tRNA ligase and is particularly closely related to the isoleucyl tRNA synthetase.
Probab=100.00 E-value=5.5e-121 Score=1137.29 Aligned_cols=614 Identities=30% Similarity=0.530 Sum_probs=512.0
Q ss_pred ccCCChhhhhHHHHHHHHHcCCCCCCCCCCCCCCcEEEEcCCCCCCCCCCCCchhHHHHHHHHHHHHHHHcCCccccccc
Q 002217 61 KRAYPFHEIEPKWQSYWENNRTFRTPDEIDTSKPKFYVLDMFPYPSGAGLHVGHPLGYTATDILARLKRMQGYNVLHPMG 140 (952)
Q Consensus 61 ~~~y~~~~iE~k~~~~W~~~~~f~~~~~~~~~k~kf~i~~~~Pypng~~lHiGH~~~~~~~Di~~Ry~r~~G~~V~~~~G 140 (952)
++.|||.++|++||++|+++++|++.. +.++++|+|++||||+||. |||||+++++++|+++||+||+|++|++++|
T Consensus 2 ~~~y~~~~iE~~~~~~W~~~~~f~~~~--~~~~~~f~i~~ppPy~nG~-lHiGH~~~~~~~D~~~Ry~rm~G~~vl~~~G 78 (861)
T TIGR00422 2 PKDYDPHEVEKKWYKKWEKSGFFKPDG--NSNKPPFCIDIPPPNVTGS-LHIGHALNWSIQDIIARYKRMKGYNVLWLPG 78 (861)
T ss_pred CCCCCHHHHHHHHHHHHHHCCCcccCc--ccCCCeEEEEeCCCCCCCC-CcHHHhHHHHHHHHHHHHHHhcCCcccCCCC
Confidence 467999999999999999999999863 3567899999999999998 9999999999999999999999999999999
Q ss_pred ccccChHHHHHHHHh----CCCc------------hHHHHHHHHHHHHHHHHcCCccccCCcccCCChhHHHHHHHHHHH
Q 002217 141 WDAFGLPAEQYAIET----GTHP------------KITTLRNINRFRTQLKSLGFSYDWNREISTIEPAYYKWTQWIFLQ 204 (952)
Q Consensus 141 ~D~~Glpie~~a~~~----g~~~------------~~~~~~~~~~~~~~l~~lgi~~Dw~~~~~T~~~~~~~~v~~~f~~ 204 (952)
|||||+|||..+++. |.++ ++|++++.+.+++||++||+++||+++|+||||.|.++|+|+|.+
T Consensus 79 ~D~~Glp~e~~vek~~~~~g~~~~~~~~e~f~~~~~~~~~~~~~~~~~~~~~lG~s~Dw~r~~~T~d~~~~~~v~~~F~~ 158 (861)
T TIGR00422 79 TDHAGIATQVKVEKKLGAEGKTKHDLGREEFREKIWEWKEESGGTIKNQIKRLGASLDWSRERFTMDEGLSKAVKEAFVR 158 (861)
T ss_pred cCcCCCcHHHHHHHHhcccCCchhhCCHHHHHHHHHHHHHHHHHHHHHHHHHhCeeeecCCCcCcCCHHHHHHHHHHHHH
Confidence 999999999887652 4443 578999999999999999999999999999999999999999999
Q ss_pred HHHCCceeeeccccccCCCCCcccCchhhccCccccCCCCeEEeeccccchhhhhhhhHhhccCCCCCCchHHHHHHHhh
Q 002217 205 LLKRGLAYQAEVPVNWCPALGTVLANEEVVDGVSERGGHPVIRKPMRQWMLKITEYADRLLDDLDDLDWPESVKEMQRNW 284 (952)
Q Consensus 205 L~~kGliy~~~~~v~wc~~~~t~ls~~Ev~~~~~~~~~~~~~~~~~~~~~~~i~~y~~~l~~~l~~~~~p~~~~~~~~~~ 284 (952)
|+++||||++.++|+|||.|+|+||++||++. ..
T Consensus 159 L~~~GlIy~~~~~v~wcp~~~t~lsd~Ev~~~--~~-------------------------------------------- 192 (861)
T TIGR00422 159 LYEKGLIYRGEYLVNWDPKLNTAISDIEVEYK--EV-------------------------------------------- 192 (861)
T ss_pred HHHCCCeeecCcccccCCCCCCcchHhHhhcc--cc--------------------------------------------
Confidence 99999999999999999999999999999642 11
Q ss_pred hccCCCceEEEEEecCCCCccCcEEEEecCCcchhccccEEEECCCCccchhhccccchHHHHHHHHHHhccchhhHhhh
Q 002217 285 IGRSEGAEMDFRVLDSDGQERDIKITVYTTRPDTIFGATYLVVAPEHPLLSSLVSTTQSQNIEEYKNLASRKSDLERTEL 364 (952)
Q Consensus 285 i~~s~~~~v~f~~~~~~~~~~~~~i~i~TT~P~Tl~g~~~v~v~p~~~y~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~ 364 (952)
+....+|+|++.+.+ +.+|+|||||||||+|++||+|||++++ |.
T Consensus 193 --~~~~~~i~f~~~~~~----~~~l~vaTtrPeTl~~~~av~V~P~~~r---------------y~-------------- 237 (861)
T TIGR00422 193 --KGKLYYIRYPLANGS----KDYLVVATTRPETMFGDTAVAVHPEDER---------------YK-------------- 237 (861)
T ss_pred --cceEEEEEEEecCCC----CCEEEEEeCCcchhhhCeEEEECCCchH---------------HH--------------
Confidence 123458999996422 2699999999999999999999999853 32
Q ss_pred hhcccccccceEEecCCCCCcccEEecCcccCCCCCCceEecCCCChhhHHHHHHcCCceeeeecCCCCCCccccccccc
Q 002217 365 QKEKTGVFSGCYARNPASGEAIPIWVADYVLGSYGTGAIMAVPAHDTRDHEFALKFDISIHSVVMPDDESSSQSEKAYTG 444 (952)
Q Consensus 365 ~~~~~~~l~g~~~~~P~~~~~~pv~~~~~V~~~~GTG~V~~~Pah~~~D~~~~~~~~L~i~~vv~~~~~~~~~~~~~y~~ 444 (952)
.|.|+++.||++++++||+.++||++++|||+||+|||||++||+++++||||++++++.+
T Consensus 238 ------~l~g~~~~~P~~~~~ipii~~~~V~~~~GTG~V~~~Pah~~~D~~~~~~~~l~~~~~id~~------------- 298 (861)
T TIGR00422 238 ------HLIGKKVILPLTGRKIPIIADEYVDMEFGTGAVKVTPAHDFNDYEWGKRHNLEFINILDED------------- 298 (861)
T ss_pred ------HhcCCEEEcCCCCCcceeeecCCCCcccCCCceEecCCCChHHHHHHHHcCCCccceeCCC-------------
Confidence 2689999999999999999999999999999999999999999999999999999999875
Q ss_pred cceEEcccCcccccccCCCCHHHHHHHHHHHHHHcCCCcc----------------------------------------
Q 002217 445 EGLIVNSSNLISGLDINGLSCQEATSKVIEWAEKTGNGKK---------------------------------------- 484 (952)
Q Consensus 445 ~g~l~~~~~~~~~~~~~gl~~~~a~~~ii~~l~~~~~~~~---------------------------------------- 484 (952)
|.+.... ..+.||.+.+|+++|++.|++.|...+
T Consensus 299 -G~~~~~~-----~~~~G~~~~~ar~~i~~~L~~~g~l~~~~~~~~~~p~~~R~g~~ve~~~~~qWFi~~~~~~~~~~~~ 372 (861)
T TIGR00422 299 -GLLNENA-----GKYQGLTRFEARKKIVEDLKEEGLLVKIEPHTHNVGTCWRSGTVVEPLLSKQWFVKVEKLADKALEA 372 (861)
T ss_pred -CeEcCCC-----cccCCcCHHHhHHHHHHHHHhCCCeeeeeeeeccCCEeCCCCCEEEEEecCcceEecHHHHHHHHHH
Confidence 2332111 358889999999999999988886321
Q ss_pred ----eecc--------------cCCceeecccCCCCcccCceEeCCCCceeecCCCCcCCCCCcccccCCCCCCCCCCcc
Q 002217 485 ----KVNY--------------KLRDWLFARQRYWGEPIPVVFLDGTGETVPLHEAELPLTLPELDDFTPTGTGEPPLSK 546 (952)
Q Consensus 485 ----~~~~--------------~l~DW~ISRQR~WG~PIPv~~~~~~~~~~~~~~~~l~v~lp~~~~~~~~G~~~~~l~~ 546 (952)
++++ +++||||||||+||+|||+|+|++|+.+.+..++..+.. |
T Consensus 373 ~~~~~i~~~P~~~~~~~~~wl~~l~DW~ISRq~~WG~piP~w~~~~~~~~~v~~~~~~~~~-~----------------- 434 (861)
T TIGR00422 373 AEEGEIKFVPKRMEKRYLNWLRNIKDWCISRQLIWGHRIPVWYCKECGEVYVAKEEPLPDD-K----------------- 434 (861)
T ss_pred hhcCCeEEEChHHHHHHHHHHhccccceeeeecccCCcceEEEECCCCcEEeccchHHhhh-h-----------------
Confidence 1121 579999999999999999999988876554322211110 0
Q ss_pred ccccccccccCCC--CCccccCCCcccccccc-chhheecCCCCchhHhhhhhhhcCCCceeEecCchhhHHHHHHHHHH
Q 002217 547 AVSWVQTTEHSSG--KPARRETSTMPQWAGSC-WYYLRFMDPKNSKELVDKTKERYWSPVDVYVGGAEHAVLHLLYARFW 623 (952)
Q Consensus 547 ~~~w~~~~~~~~g--~~~~re~d~lD~WfdSs-wy~~~~~~p~~~~~~~~~~~~~~w~PvDlyv~G~D~~~~HLly~Rfw 623 (952)
. .|| ..++|++|||||||||+ ||+...++|.++.+ .++|||+|++++|+|++ |||
T Consensus 435 ------~---~~~~~~~~~~~~dVlDtWFdS~l~~~s~~g~p~~~~~------~~~~~P~d~~~~G~Dii-------~fw 492 (861)
T TIGR00422 435 ------T---NTGPSVELEQDTDVLDTWFSSSLWPFSTLGWPDETKD------LKKFYPTDLLVTGYDII-------FFW 492 (861)
T ss_pred ------h---ccCCcccEEECCCcccceeccchHHHHHhCCCCChHH------HhhcCCcceeecchhhh-------hHH
Confidence 0 133 46899999999999997 78888888875422 25788999999999997 888
Q ss_pred HHHHHHhcC-cCCCCcchhhhhhceeccccceeEEecCCCccccCCCCCcccccccccCccccccccCCceeeccCcchh
Q 002217 624 HKVLYDIGV-VSTKEPFKCVINQGIILGEMQYMVCKDVDGSYISADSTDTLGEYEQESIPEEKVMKSGDFFVMKDNPNIR 702 (952)
Q Consensus 624 ~~~L~~~~~-~~~~~PFk~l~~~G~vl~~~~y~~~~d~~g~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~vl~~~~~~~ 702 (952)
+..+..+++ +.+..||+++++||||+++
T Consensus 493 ~~~~~~~~~~~~~~~Pfk~v~~hG~v~d~--------------------------------------------------- 521 (861)
T TIGR00422 493 VARMIFRSLALTGQVPFKEVYIHGLVRDE--------------------------------------------------- 521 (861)
T ss_pred HHHHHHHHHHhcCCCchheEEEeeEEECC---------------------------------------------------
Confidence 776665554 4468899999999999863
Q ss_pred hcccccccccCCCCCCChhhHHhhhCchhhhhhhhhcCCCCCCCCCChhhHHHHHHHHHHHHHHH---hccCCCCC-CCC
Q 002217 703 LIARAHKMSKSRGNVVNPDDVVTEYGADSLRLYEMFMGPFRDSKTWNTSGIEGVHRFLGRMWRLI---VGSSLPDG-TFK 778 (952)
Q Consensus 703 v~~~g~KMSKSkGNvV~P~eii~~YGaDalRl~ll~~~~~~~~~~~s~~~i~~~~r~l~~l~~~~---~~~~~~~~-~~~ 778 (952)
+|+|||||+||+|+|.++|++||||++|||+++.++.+++.+|+++.+.++++|++++||.. ... .... .+.
T Consensus 522 ---~G~KMSKS~GN~i~p~~~i~~ygaDalR~~l~~~~~~~~d~~f~~~~~~~~~~~~nkl~N~~rf~~~~-~~~~~~~~ 597 (861)
T TIGR00422 522 ---QGRKMSKSLGNVIDPLDVIEKYGADALRFTLASLVTPGDDINFDWKRVESARNFLNKLWNASRFVLMN-LSDDLELS 597 (861)
T ss_pred ---CCCCCCcCCCCCCCHHHHHHHhChHHHHHHHHhCCCCCCCceecHHHHHHHHHHHHHHHHHHHHHHhc-cccccccc
Confidence 27999999999999999999999999999999988889999999999999999999999833 211 1110 011
Q ss_pred CCccCCCCCChHHHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHH-HHHhcccc--------------------hhHHHH
Q 002217 779 GGTVVNDEEPTLEQLCTLHKCIAKVTEEIEGTRFNTGISAMMEFI-NAAYKWEK--------------------HPRKII 837 (952)
Q Consensus 779 ~~~~~~~~~~d~~~l~~l~~~i~~v~~~~e~~~f~~ai~~l~~f~-~~~~~~~~--------------------~~~~vL 837 (952)
.. .......|+|+++++++++++++++|++|+|+.|++++++|+ +++.+||. .+.++|
T Consensus 598 ~~-~~~~~~~D~wil~~l~~~~~~v~~~~e~~~f~~A~~~l~~f~~~~~~n~Yie~~k~~~~~~~~~~~~~~~~~l~~~l 676 (861)
T TIGR00422 598 GG-EEKLSLADRWILSKLNRTIKEVRKALDKYRFAEAAKALYEFIWNDFCDWYIELVKYRLYNGNEAEKKAARDTLYYVL 676 (861)
T ss_pred cc-cccCCHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHHHHHHHhHHHHcCCCcHHHHHHHHHHHHHH
Confidence 00 011234588999999999999999999999999999999997 55555431 134689
Q ss_pred HHHHHHhCCcchhHHHHHHHHcCCC-CCccccCCCCCCccccC
Q 002217 838 EPFILLLAPYAPHMSEELWFRLGHS-NSLAYESFPKANPDYLK 879 (952)
Q Consensus 838 ~~l~~LLaPf~P~iaEElw~~L~~~-~sV~~~~WP~~~~~~l~ 879 (952)
+.+++||+|||||+|||||+.|+.. +||++++||++++..++
T Consensus 677 ~~~~~lL~Pf~P~itEelw~~L~~~~~si~~~~~P~~~~~~~d 719 (861)
T TIGR00422 677 DKALRLLHPFMPFITEEIWQHFKEGADSIMLQSYPVVDAEFVD 719 (861)
T ss_pred HHHHHHHhhhhhHHHHHHHHhCcccCCceeecCCCCcccccCC
Confidence 9999999999999999999999754 69999999998876554
No 20
>PLN02843 isoleucyl-tRNA synthetase
Probab=100.00 E-value=2.7e-121 Score=1138.20 Aligned_cols=669 Identities=23% Similarity=0.366 Sum_probs=503.2
Q ss_pred CChhhhhHHHHHHHHHcCCCCCCCCCCCCCCcEEEEcCCCCCCCCCCCCchhHHHHHHHHHHHHHHHcCCcccccccccc
Q 002217 64 YPFHEIEPKWQSYWENNRTFRTPDEIDTSKPKFYVLDMFPYPSGAGLHVGHPLGYTATDILARLKRMQGYNVLHPMGWDA 143 (952)
Q Consensus 64 y~~~~iE~k~~~~W~~~~~f~~~~~~~~~k~kf~i~~~~Pypng~~lHiGH~~~~~~~Di~~Ry~r~~G~~V~~~~G~D~ 143 (952)
-++.++|++||++|+++++|++..+.+ .+++|+|++||||+||. |||||++|++++|+++||+||+||+|+|++||||
T Consensus 3 ~~~~~~E~~~~~~W~~~~~y~~~~~~~-~~~~f~i~~~PPy~nG~-lHiGHa~~~~lkDii~Ry~rm~G~~v~~~pG~D~ 80 (974)
T PLN02843 3 ANSVTREPEIQKLWEENQVYKRVSDRN-NGESFTLHDGPPYANGD-LHIGHALNKILKDFINRYQLLQGKKVHYVPGWDC 80 (974)
T ss_pred CChHHhhHHHHHHHHHCCCcccccccc-CCCCEEEeCCCCCCCCC-cchhHHHHHHHHHHHHHHHHhcCCccccCCccCC
Confidence 578899999999999999999865322 35679999999999998 9999999999999999999999999999999999
Q ss_pred cChHHHHHHHHh-C------CC-------chHHHHHHHHHHHHHHHHcCCccccCCcccCCChhHHHHHHHHHHHHHHCC
Q 002217 144 FGLPAEQYAIET-G------TH-------PKITTLRNINRFRTQLKSLGFSYDWNREISTIEPAYYKWTQWIFLQLLKRG 209 (952)
Q Consensus 144 ~Glpie~~a~~~-g------~~-------~~~~~~~~~~~~~~~l~~lgi~~Dw~~~~~T~~~~~~~~v~~~f~~L~~kG 209 (952)
||+|||.++.+. + .. +++++.++++.|+++|++||++.||+++|.||||.|.++++|+|.+|+++|
T Consensus 81 hGlpie~~vek~l~~~~~~~~~~~~f~~~c~~~~~~~~~~~~~~~~~lG~~~Dw~~~y~T~d~~~~~~v~~~f~~l~~~G 160 (974)
T PLN02843 81 HGLPIELKVLQSLDQEARKELTPIKLRAKAAKFAKKTVDTQRESFKRYGVWGDWENPYLTLDPEYEAAQIEVFGQMFLNG 160 (974)
T ss_pred CCcHHHHHHHHHhchhhhccCCHHHHHHHHHHHHHHHHHHHHHHHHHhCCceecCCCCccCCHHHHHHHHHHHHHHHHCC
Confidence 999999988542 2 22 456688888999999999999999999999999999999999999999999
Q ss_pred ceeeeccccccCCCCCcccCchhhccCccccCCCCeEEeeccccchhhhhhhhHhhccCCCCCCchHHHHHHHhhhccCC
Q 002217 210 LAYQAEVPVNWCPALGTVLANEEVVDGVSERGGHPVIRKPMRQWMLKITEYADRLLDDLDDLDWPESVKEMQRNWIGRSE 289 (952)
Q Consensus 210 liy~~~~~v~wc~~~~t~ls~~Ev~~~~~~~~~~~~~~~~~~~~~~~i~~y~~~l~~~l~~~~~p~~~~~~~~~~i~~s~ 289 (952)
|||++.+||+|||.|+|+||++||++... + .|.
T Consensus 161 lIyr~~kpV~Wcp~~~Talae~Evey~e~----~-------------------------------------------~~~ 193 (974)
T PLN02843 161 YIYRGRKPVHWSPSSRTALAEAELEYPEG----H-------------------------------------------VSK 193 (974)
T ss_pred CEEecceeeeecCCCCCcchHhHhcccCC----c-------------------------------------------cCc
Confidence 99999999999999999999999985310 0 256
Q ss_pred CceEEEEEecCCCC--------ccCcEEEEecCCcchhccccEEEECCCCccchhhcccc----c---------------
Q 002217 290 GAEMDFRVLDSDGQ--------ERDIKITVYTTRPDTIFGATYLVVAPEHPLLSSLVSTT----Q--------------- 342 (952)
Q Consensus 290 ~~~v~f~~~~~~~~--------~~~~~i~i~TT~P~Tl~g~~~v~v~p~~~y~~~~~~~~----~--------------- 342 (952)
++||+|++.+.... ..+.+++||||||||||||+||+|||+..|+.+...++ .
T Consensus 194 s~yv~f~~~~~~~~~~~~~~~~~~~~~lviwTTtPwTlpan~AiaVnP~~~Y~~v~~~~~~~d~r~~~~~~~~~~~~~~~ 273 (974)
T PLN02843 194 SIYVAFPVVSPSETSPEELEEFLPGLSLAIWTTTPWTMPANAAVAVNDKLQYSVVEVQSFSEDESTSGGNKKKRPGNVLK 273 (974)
T ss_pred eEEEEEEecCCccccccccccccccceEEEEeCcchhhccCcEEEECCCCceEEEEeccccccccccccccccccccccc
Confidence 67899998643110 01259999999999999999999999999987655310 0
Q ss_pred -----hHH-HHHHHHHHhccchhhHhhhhhcccccccceEEecCCCCCcccEEe-cCcccCCCCCCceEecCCCChhhHH
Q 002217 343 -----SQN-IEEYKNLASRKSDLERTELQKEKTGVFSGCYARNPASGEAIPIWV-ADYVLGSYGTGAIMAVPAHDTRDHE 415 (952)
Q Consensus 343 -----~~~-~~~y~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~P~~~~~~pv~~-~~~V~~~~GTG~V~~~Pah~~~D~~ 415 (952)
... .+.+..........+-..+...++..|.|+++.||++++++||+. ++||++++|||+||+|||||++||+
T Consensus 274 ~~~~~~~iva~~l~~~~~~~~~~~~~~~~~~~g~~L~g~~~~~P~~~~~~pii~~~~~V~~~~GTG~Vh~aPaHg~~Dy~ 353 (974)
T PLN02843 274 EQQKLFLIVATDLVPALEAKWGVKLVVLKTFPGSDLEGCRYIHPLYNRESPVVIGGDYITTESGTGLVHTAPGHGQEDYI 353 (974)
T ss_pred cccCceEEeHHHHHHHHHHhhCCceEEEeeechHHcCCCEEECCCCCCceeEEecCCccCCCCCCCeEEeCCCCCHHHHH
Confidence 000 011111110000111122334566789999999999999999975 8999999999999999999999999
Q ss_pred HHHHcCCceeeeecCCCCCCccccccccccceEEcccCcccccccCCCCHH-HHHHHHHHHHHHcCCCcce---------
Q 002217 416 FALKFDISIHSVVMPDDESSSQSEKAYTGEGLIVNSSNLISGLDINGLSCQ-EATSKVIEWAEKTGNGKKK--------- 485 (952)
Q Consensus 416 ~~~~~~L~i~~vv~~~~~~~~~~~~~y~~~g~l~~~~~~~~~~~~~gl~~~-~a~~~ii~~l~~~~~~~~~--------- 485 (952)
++++|||+++++|+++ |.+++..+ .+.|+.+. +|++.|++.|++.|...+.
T Consensus 354 ~~~~~~l~~~~~vd~~-G~~~~~~~------------------~~~G~~v~~~a~~~Ii~~L~~~g~l~~~e~~~H~yp~ 414 (974)
T PLN02843 354 TGLKYGLPLLSPVDDA-GKFTEEAG------------------QFSGLSVLGEGNAAVVEALDEAGSLLMEEAYGHKYPY 414 (974)
T ss_pred HHHHcCCCcccccCCC-ceEccCCc------------------ccCCcEehhcchHHHHHHHHHCCCeeeeeeecCCCCc
Confidence 9999999999999876 43333222 25555554 5666666666666542110
Q ss_pred ---------------------------------ec--------------ccCCceeecccCCCCcccCceEeCCCCceee
Q 002217 486 ---------------------------------VN--------------YKLRDWLFARQRYWGEPIPVVFLDGTGETVP 518 (952)
Q Consensus 486 ---------------------------------~~--------------~~l~DW~ISRQR~WG~PIPv~~~~~~~~~~~ 518 (952)
++ -+++||||||||+||+|||+|+|++|++++.
T Consensus 415 cwR~~~pvi~r~t~QWFi~~~~~k~~al~~~~~v~~~P~~~~~r~~~~i~~~~DWcISRQr~WG~pIP~~~~~~~~~~~~ 494 (974)
T PLN02843 415 DWRTKKPTIFRATEQWFASVEGFRQAALDAIDKVKWIPAQGENRIRAMVSGRSDWCISRQRTWGVPIPVFYHVETKEPLM 494 (974)
T ss_pred cCCCCCeEEEEecCceeEeCHHHHHHHHHHHhccEEEChHHHHHHHHHHhcCcceeeeeccccccEEEEEEEcCCCCEee
Confidence 00 1478999999999999999999998886653
Q ss_pred cCCCCcCCCCCcccccCCCCCCCCCCccccccccccccCCCCCccccCCCccccccccchhheecCCCCchhHhhhhhhh
Q 002217 519 LHEAELPLTLPELDDFTPTGTGEPPLSKAVSWVQTTEHSSGKPARRETSTMPQWAGSCWYYLRFMDPKNSKELVDKTKER 598 (952)
Q Consensus 519 ~~~~~l~v~lp~~~~~~~~G~~~~~l~~~~~w~~~~~~~~g~~~~re~d~lD~WfdSswy~~~~~~p~~~~~~~~~~~~~ 598 (952)
..+..-.+ .+.+...|.+.+.-....+++...+..++..++|++|||||||||+..+.... . .+.+
T Consensus 495 ~~~~i~~~----~~~~~~~g~~~w~~~~~~~l~p~~~~~~~~~~~k~~DvlDvWFdSg~~~~~~~---------~-~~~~ 560 (974)
T PLN02843 495 NEETIAHV----KSIVAQKGSDAWWYMDVEDLLPEKYRDKASDYEKGTDTMDVWFDSGSSWAGVL---------G-SREG 560 (974)
T ss_pred chhhHHHH----HHHHHhhCCcccccCCHHHhCcccccCchhhhEecccccccchhcCCChHHHh---------c-cccc
Confidence 22110000 01112234432221122233322222335679999999999999963221111 0 1113
Q ss_pred cCCCceeEecCchhhHHHHHHHHHHHHHHHHhcC-cCCCCcchhhhhhceeccccceeEEecCCCccccCCCCCcccccc
Q 002217 599 YWSPVDVYVGGAEHAVLHLLYARFWHKVLYDIGV-VSTKEPFKCVINQGIILGEMQYMVCKDVDGSYISADSTDTLGEYE 677 (952)
Q Consensus 599 ~w~PvDlyv~G~D~~~~HLly~Rfw~~~L~~~~~-~~~~~PFk~l~~~G~vl~~~~y~~~~d~~g~~~~~~~~~~~~~~~ 677 (952)
++||+|+|++|+||+ |||+++++..++ +.+..||+++++||+|+++
T Consensus 561 ~~~PaDl~~eG~Di~-------rgWf~s~l~~~~~~~g~~Pfk~v~~HG~vld~-------------------------- 607 (974)
T PLN02843 561 LSYPADLYLEGSDQH-------RGWFQSSLLTSVATKGKAPYKSVLTHGFVLDE-------------------------- 607 (974)
T ss_pred cCCCceeeeeecccc-------chHHHHHHHHHHHhcCCCccceEEEeccEECC--------------------------
Confidence 468999999999996 999776555544 4567899999999999864
Q ss_pred cccCccccccccCCceeeccCcchhhcccccccccCCCCCCChhhHHh---------hhCchhhhhhhhhcCCCCCCCCC
Q 002217 678 QESIPEEKVMKSGDFFVMKDNPNIRLIARAHKMSKSRGNVVNPDDVVT---------EYGADSLRLYEMFMGPFRDSKTW 748 (952)
Q Consensus 678 ~~~~~~~~v~~~~~~~vl~~~~~~~v~~~g~KMSKSkGNvV~P~eii~---------~YGaDalRl~ll~~~~~~~~~~~ 748 (952)
+|+|||||+||||+|.++|+ +||||+||||+++ ..++++.+|
T Consensus 608 ----------------------------~G~KMSKSlGNvI~p~~vi~~~~~~~~~~~yGaD~lR~~l~~-~~~~~d~~~ 658 (974)
T PLN02843 608 ----------------------------KGFKMSKSLGNVVDPRLVIEGGKNQKQEPAYGADVLRLWVAS-VDYTGDVLI 658 (974)
T ss_pred ----------------------------CCCCcCCCCCCcCCHHHHHhhccccccccccChHHHHHHHHh-cccCCCcee
Confidence 38999999999999999999 8999999999995 556778899
Q ss_pred ChhhHHHHHHHHH---HHHHHHhccCCCCCCCCCCccC--CCCCChHHHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHH
Q 002217 749 NTSGIEGVHRFLG---RMWRLIVGSSLPDGTFKGGTVV--NDEEPTLEQLCTLHKCIAKVTEEIEGTRFNTGISAMMEFI 823 (952)
Q Consensus 749 s~~~i~~~~r~l~---~l~~~~~~~~~~~~~~~~~~~~--~~~~~d~~~l~~l~~~i~~v~~~~e~~~f~~ai~~l~~f~ 823 (952)
+.+.++.+.++++ ++++|++++.. +... ..... .....|+|+++++++++++++++|++|+|++|++++++|+
T Consensus 659 s~~~l~~~~~~~~kl~n~~rf~lgnl~-~~~~-~~~~~~~~~~~~D~wiLskL~~li~~v~~aye~y~f~~A~~~i~~f~ 736 (974)
T PLN02843 659 GPQILKQMSDIYRKLRGTLRYLLGNLH-DWKP-DNAVPYEDLPSIDKYALFQLENVVNEIEESYDNYQFFKIFQILQRFT 736 (974)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHhCcc-CCCc-ccccCccccCHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHH
Confidence 9888886555554 45556665532 2111 11111 1234589999999999999999999999999999999986
Q ss_pred H-HHhccc----------c------------hhHHHHHHHHHHhCCcchhHHHHHHHHcCC------CCCccccCCCCCC
Q 002217 824 N-AAYKWE----------K------------HPRKIIEPFILLLAPYAPHMSEELWFRLGH------SNSLAYESFPKAN 874 (952)
Q Consensus 824 ~-~~~~~~----------~------------~~~~vL~~l~~LLaPf~P~iaEElw~~L~~------~~sV~~~~WP~~~ 874 (952)
. ++.+|| . .++.+|+.+++||+|||||+|||||+.|+. .+|||++.||+.+
T Consensus 737 ~~dlsn~Yie~~Kprly~~~~~~~~r~~~qtvL~~iLe~l~~LLaPimPf~aEEiw~~L~~~~~~~~~~sv~~~~~P~~~ 816 (974)
T PLN02843 737 IVDLSNFYLDVAKDRLYVGGTTSFTRRSCQTVLAAHLLSLLRAIAPILPHLAEDAWQNLPFQEDGSAAESVFEAGWPTPN 816 (974)
T ss_pred HHHHhHHHHHhcchhhhccCCCHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHhccccccCCCCCceEecCCCCCc
Confidence 4 343321 0 134689999999999999999999999974 3699999999987
Q ss_pred cccc
Q 002217 875 PDYL 878 (952)
Q Consensus 875 ~~~l 878 (952)
+.+.
T Consensus 817 ~~~~ 820 (974)
T PLN02843 817 EEWL 820 (974)
T ss_pred hhhc
Confidence 6654
No 21
>PRK05729 valS valyl-tRNA synthetase; Reviewed
Probab=100.00 E-value=5e-120 Score=1127.51 Aligned_cols=605 Identities=30% Similarity=0.513 Sum_probs=506.1
Q ss_pred ccccCCChhhhhHHHHHHHHHcCCCCCCCCCCCCCCcEEEEcCCCCCCCCCCCCchhHHHHHHHHHHHHHHHcCCccccc
Q 002217 59 VVKRAYPFHEIEPKWQSYWENNRTFRTPDEIDTSKPKFYVLDMFPYPSGAGLHVGHPLGYTATDILARLKRMQGYNVLHP 138 (952)
Q Consensus 59 ~~~~~y~~~~iE~k~~~~W~~~~~f~~~~~~~~~k~kf~i~~~~Pypng~~lHiGH~~~~~~~Di~~Ry~r~~G~~V~~~ 138 (952)
++++.||+.++|++||++|+++++|+... + ++++|+|++||||+||. |||||+++++++|+++||+||+||+|+|+
T Consensus 4 ~~~~~y~~~~~E~~~~~~W~~~~~f~~~~--~-~~~~f~i~~ppP~~~G~-lHiGHa~~~~~~D~~~Ry~rm~G~~vl~~ 79 (874)
T PRK05729 4 ELPKTYDPKEVEAKWYQKWEEKGYFKPDD--N-SKKPFSIVIPPPNVTGS-LHMGHALNNTLQDILIRYKRMQGYNTLWL 79 (874)
T ss_pred cCCCCCCHHHHHHHHHHHHHHCCCcccCc--C-CCCCEEEecCCCCCCCc-chHHHHHHHHHHHHHHHHHHhCCCcccCC
Confidence 46788999999999999999999999763 2 35569999999999998 99999999999999999999999999999
Q ss_pred ccccccChHHHHHHHH----hCCCc------------hHHHHHHHHHHHHHHHHcCCccccCCcccCCChhHHHHHHHHH
Q 002217 139 MGWDAFGLPAEQYAIE----TGTHP------------KITTLRNINRFRTQLKSLGFSYDWNREISTIEPAYYKWTQWIF 202 (952)
Q Consensus 139 ~G~D~~Glpie~~a~~----~g~~~------------~~~~~~~~~~~~~~l~~lgi~~Dw~~~~~T~~~~~~~~v~~~f 202 (952)
+||||||+|+|.++++ .|+++ .+|++++.+.|++||++||+++||+|+|+||||.|.++|+|+|
T Consensus 80 ~G~D~~Gi~~e~~ve~~l~~~g~~~~~~~re~f~~~~~~w~~~~~~~~~~~~~~lG~s~Dw~r~~~T~d~~~~~~v~~~F 159 (874)
T PRK05729 80 PGTDHAGIATQMVVERQLAAEGKSRHDLGREKFLEKVWEWKEESGGTITNQLRRLGASCDWSRERFTMDEGLSKAVREVF 159 (874)
T ss_pred CCCCccchhhHHHHHHHHHhcCCChHHCCHHHHHHHHHHHHHHHHHHHHHHHHHhCcceecCCCcccCCHHHHHHHHHHH
Confidence 9999999999877644 36554 3568999999999999999999999999999999999999999
Q ss_pred HHHHHCCceeeeccccccCCCCCcccCchhhccCccccCCCCeEEeeccccchhhhhhhhHhhccCCCCCCchHHHHHHH
Q 002217 203 LQLLKRGLAYQAEVPVNWCPALGTVLANEEVVDGVSERGGHPVIRKPMRQWMLKITEYADRLLDDLDDLDWPESVKEMQR 282 (952)
Q Consensus 203 ~~L~~kGliy~~~~~v~wc~~~~t~ls~~Ev~~~~~~~~~~~~~~~~~~~~~~~i~~y~~~l~~~l~~~~~p~~~~~~~~ 282 (952)
.+|+++||||++.++|+|||.|+|+||++||++. +.
T Consensus 160 ~~L~~~GlIyr~~~~v~wcp~~~talsd~EV~~~--~~------------------------------------------ 195 (874)
T PRK05729 160 VRLYEKGLIYRGKRLVNWDPKLQTALSDLEVEYK--EV------------------------------------------ 195 (874)
T ss_pred HHHHHCCCEeecCcccccCCCCCCcchhhhcccc--cc------------------------------------------
Confidence 9999999999999999999999999999999742 11
Q ss_pred hhhccCCCceEEEEEecCCCCccCcEEEEecCCcchhccccEEEECCCCccchhhccccchHHHHHHHHHHhccchhhHh
Q 002217 283 NWIGRSEGAEMDFRVLDSDGQERDIKITVYTTRPDTIFGATYLVVAPEHPLLSSLVSTTQSQNIEEYKNLASRKSDLERT 362 (952)
Q Consensus 283 ~~i~~s~~~~v~f~~~~~~~~~~~~~i~i~TT~P~Tl~g~~~v~v~p~~~y~~~~~~~~~~~~~~~y~~~~~~~~~~~~~ 362 (952)
.+..++|+|++.+. +.+|+|||||||||+|++||||||+++ +|.+
T Consensus 196 ----~~~~~~i~f~~~~~-----~~~l~vaTtrPeTl~~~~avaV~P~d~---------------ry~~----------- 240 (874)
T PRK05729 196 ----KGKLWHIRYPLADG-----SDYLVVATTRPETMLGDTAVAVNPEDE---------------RYKH----------- 240 (874)
T ss_pred ----cceEEEEEEEecCC-----CcEEEEEeCCcchhhcCeeEeECCCcc---------------HHHH-----------
Confidence 12345899999542 369999999999999999999999985 2322
Q ss_pred hhhhcccccccceEEecCCCCCcccEEecCcccCCCCCCceEecCCCChhhHHHHHHcCCceeeeecCCCCCCccccccc
Q 002217 363 ELQKEKTGVFSGCYARNPASGEAIPIWVADYVLGSYGTGAIMAVPAHDTRDHEFALKFDISIHSVVMPDDESSSQSEKAY 442 (952)
Q Consensus 363 ~~~~~~~~~l~g~~~~~P~~~~~~pv~~~~~V~~~~GTG~V~~~Pah~~~D~~~~~~~~L~i~~vv~~~~~~~~~~~~~y 442 (952)
|.|+++.||++|+++||+.++||++++|||+||++||||++||+++++||||++++++++
T Consensus 241 ---------l~g~~~~~P~~~~~ipii~~~~V~~~~GTG~V~~~Pah~~~D~~~~~~~~l~~~~~i~~~----------- 300 (874)
T PRK05729 241 ---------LIGKTVILPLVGREIPIIADEYVDPEFGTGAVKITPAHDPNDFEVGKRHNLPMINIMDED----------- 300 (874)
T ss_pred ---------hcCCEEECCCCCCeeeEecCccCCCCCCCcceEecCCCCHHHHHHHHHcCCCcccccCCC-----------
Confidence 679999999999999999999999999999999999999999999999999999999875
Q ss_pred cccceEEcccCcccccccCCCCHHHHHHHHHHHHHHcCCCcce-------------------------------------
Q 002217 443 TGEGLIVNSSNLISGLDINGLSCQEATSKVIEWAEKTGNGKKK------------------------------------- 485 (952)
Q Consensus 443 ~~~g~l~~~~~~~~~~~~~gl~~~~a~~~ii~~l~~~~~~~~~------------------------------------- 485 (952)
|.|.... ..+.||...+|+++|++.|++.|...+.
T Consensus 301 ---G~~~~~~-----~~~~G~~~~~ar~~i~~~L~~~g~l~~~~~~~~~~p~~~R~~~~i~~~~~~QWFi~~~~~~~~~~ 372 (874)
T PRK05729 301 ---GTINENP-----GEYQGLDRFEARKAIVADLEELGLLVKIEPHTHSVGHSDRSGVVIEPYLSDQWFVKMKPLAKPAL 372 (874)
T ss_pred ---CeEcCCC-----cccCCCCHHHHHHHHHHHHHhCCCeeeeEEeeccCCeeCCCCceEEEEecCcceEehHHHHHHHH
Confidence 3332211 3488899999999999999988864211
Q ss_pred -------ec--------------ccCCceeecccCCCCcccCceEeCCCCceeecCCCCcCCCCCcccccCCCCCCCCCC
Q 002217 486 -------VN--------------YKLRDWLFARQRYWGEPIPVVFLDGTGETVPLHEAELPLTLPELDDFTPTGTGEPPL 544 (952)
Q Consensus 486 -------~~--------------~~l~DW~ISRQR~WG~PIPv~~~~~~~~~~~~~~~~l~v~lp~~~~~~~~G~~~~~l 544 (952)
+. .+++||||||||+||+|||+|+|++ +. +.+..+. |
T Consensus 373 ~~v~~~~i~~~P~~~~~~~~~wl~~l~DWcISRq~~WG~pIP~~~~~~-~~-~~v~~~~-----~--------------- 430 (874)
T PRK05729 373 EAVENGEIKFVPERWEKTYFHWMENIQDWCISRQLWWGHRIPAWYDED-GE-VYVGREE-----P--------------- 430 (874)
T ss_pred HHHhcCCcEEEChHHHHHHHHHHhcCccceeeeecccCCcccEEEeCC-Cc-EEeCCcc-----c---------------
Confidence 11 1478999999999999999999975 43 2222110 0
Q ss_pred ccccccccccccCCC-CCccccCCCcccccccc-chhheecCCCCchhHhhhhhhhcCCCceeEecCchhhHHHHHHHHH
Q 002217 545 SKAVSWVQTTEHSSG-KPARRETSTMPQWAGSC-WYYLRFMDPKNSKELVDKTKERYWSPVDVYVGGAEHAVLHLLYARF 622 (952)
Q Consensus 545 ~~~~~w~~~~~~~~g-~~~~re~d~lD~WfdSs-wy~~~~~~p~~~~~~~~~~~~~~w~PvDlyv~G~D~~~~HLly~Rf 622 (952)
+.|. ..++|++|||||||||+ ||+...++|.+..+ .++|||+|++++|+|++ ||
T Consensus 431 -----------~~~~~~~~~~~~DvlDtWfsS~l~~~~~lgwp~~~~~------~~~~~P~d~~~~G~Dii-------~~ 486 (874)
T PRK05729 431 -----------EAREKALLTQDEDVLDTWFSSALWPFSTLGWPEKTED------LKRFYPTSVLVTGFDII-------FF 486 (874)
T ss_pred -----------ccccccCeEeCCceecceecCCccHHHHhCCCCCcHH------HHhcCCccccccccccc-------ch
Confidence 0111 24899999999999997 99988889865332 26789999999999996 89
Q ss_pred HHHHHHHhcCc-CCCCcchhhhhhceeccccceeEEecCCCccccCCCCCcccccccccCccccccccCCceeeccCcch
Q 002217 623 WHKVLYDIGVV-STKEPFKCVINQGIILGEMQYMVCKDVDGSYISADSTDTLGEYEQESIPEEKVMKSGDFFVMKDNPNI 701 (952)
Q Consensus 623 w~~~L~~~~~~-~~~~PFk~l~~~G~vl~~~~y~~~~d~~g~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~vl~~~~~~ 701 (952)
|+.+|+.+|+. .+..||+++++||||++.
T Consensus 487 W~a~~~~~~~~~~~~~Pfk~v~~hG~v~d~-------------------------------------------------- 516 (874)
T PRK05729 487 WVARMIMMGLHFTGQVPFKDVYIHGLVRDE-------------------------------------------------- 516 (874)
T ss_pred HHHHHHHHHHHhcCCCchhheEEeeeEECC--------------------------------------------------
Confidence 98888877763 567899999999999853
Q ss_pred hhcccccccccCCCCCCChhhHHhhhCchhhhhhhhhcCCCCCCCCCChhhHHHHHHHHHHHHHHH---hccCCCCCCCC
Q 002217 702 RLIARAHKMSKSRGNVVNPDDVVTEYGADSLRLYEMFMGPFRDSKTWNTSGIEGVHRFLGRMWRLI---VGSSLPDGTFK 778 (952)
Q Consensus 702 ~v~~~g~KMSKSkGNvV~P~eii~~YGaDalRl~ll~~~~~~~~~~~s~~~i~~~~r~l~~l~~~~---~~~~~~~~~~~ 778 (952)
+|+|||||+||||+|.++|++||||+||||+++.++.++|.+|+++.++++.++++++||.. ..+ +. .+.
T Consensus 517 ----~G~KMSKSlGNvIdP~dvi~~yGaDalR~~ll~~~~~~~Di~fs~~~l~~~~~~~nkl~N~~Rf~~~~-~~--~~~ 589 (874)
T PRK05729 517 ----QGRKMSKSKGNVIDPLDLIDKYGADALRFTLAALASPGRDIRFDEERVEGYRNFANKLWNASRFVLMN-LE--GAD 589 (874)
T ss_pred ----CCCCcccCCCCCCCHHHHHHHhChHHHHHHHHhCCCCCCCceeCHHHHHHHHHHHHHHHHHHHHHHHh-cc--cCC
Confidence 37999999999999999999999999999999988899999999999999999999988743 221 11 111
Q ss_pred CCccC---CCCCChHHHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHH-HHhcccc-----------------hhHHHH
Q 002217 779 GGTVV---NDEEPTLEQLCTLHKCIAKVTEEIEGTRFNTGISAMMEFIN-AAYKWEK-----------------HPRKII 837 (952)
Q Consensus 779 ~~~~~---~~~~~d~~~l~~l~~~i~~v~~~~e~~~f~~ai~~l~~f~~-~~~~~~~-----------------~~~~vL 837 (952)
..... .....|+|++++++++++++.++|++|+|+.|++.+++|++ ++++||. .+.++|
T Consensus 590 ~~~~~~~~~~~~~D~wil~~l~~~~~~v~~~~e~y~f~~a~~~l~~f~~~~~~~~Yle~~k~~l~~~~~~~~~~~l~~~l 669 (874)
T PRK05729 590 VGELPDPEELSLADRWILSRLNRTVAEVTEALDKYRFDEAARALYEFIWNEFCDWYLELAKPVLQEAAKRATRATLAYVL 669 (874)
T ss_pred cccccccccCCHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHH
Confidence 11111 12345889999999999999999999999999999999984 4544431 234689
Q ss_pred HHHHHHhCCcchhHHHHHHHHcCCC---CCccccCCCCCCccc
Q 002217 838 EPFILLLAPYAPHMSEELWFRLGHS---NSLAYESFPKANPDY 877 (952)
Q Consensus 838 ~~l~~LLaPf~P~iaEElw~~L~~~---~sV~~~~WP~~~~~~ 877 (952)
+.+++||+|||||+|||||+.|+.. +||+.++||++++.+
T Consensus 670 ~~~~~lL~Pf~PfitEelw~~l~~~~~~~si~~~~~P~~~~~~ 712 (874)
T PRK05729 670 EQILRLLHPFMPFITEELWQKLAPLGIEESIMLAPWPEADEAI 712 (874)
T ss_pred HHHHHHHcccchhhHHHHHHhcccCCCCCceeecCCCCCCccc
Confidence 9999999999999999999999753 379999999987654
No 22
>PLN02959 aminoacyl-tRNA ligase
Probab=100.00 E-value=4.3e-113 Score=1072.42 Aligned_cols=672 Identities=20% Similarity=0.281 Sum_probs=497.9
Q ss_pred cccCCChhhhhHHHHHHHHHcCCCCCCCCCC--CCCCcEEEEcCCCCCCCCCCCCchhHHHHHHHHHHHHHHHcCCcccc
Q 002217 60 VKRAYPFHEIEPKWQSYWENNRTFRTPDEID--TSKPKFYVLDMFPYPSGAGLHVGHPLGYTATDILARLKRMQGYNVLH 137 (952)
Q Consensus 60 ~~~~y~~~~iE~k~~~~W~~~~~f~~~~~~~--~~k~kf~i~~~~Pypng~~lHiGH~~~~~~~Di~~Ry~r~~G~~V~~ 137 (952)
..+++++.++|++||++|+++++|+...+.+ .++++|+++++|||+||. |||||++|++++|+++||+||+||+|+|
T Consensus 9 ~~~r~~l~~iE~k~q~~W~~~~~fe~~~~~~~~~~~~kf~i~~ppPY~NG~-lHiGHa~t~t~~D~i~Rykrm~G~~vlf 87 (1084)
T PLN02959 9 TARRDRLLEIEVAVQKWWEEEKVFEAEAGDEPPKPGEKFFGNFPYPYMNGL-LHLGHAFSLSKLEFAAAYHRLRGANVLL 87 (1084)
T ss_pred CchhcCHHHHHHHHHHHHHhcCCcccCcccccCCCCCcEEEeCCCCCCCCC-cchhhHHHHHHHHHHHHHHHcCCCccCC
Confidence 3478999999999999999999999875322 245889999999999998 9999999999999999999999999999
Q ss_pred cccccccChHHHHHHHHh-------CCCc----------------------------------hH---------------
Q 002217 138 PMGWDAFGLPAEQYAIET-------GTHP----------------------------------KI--------------- 161 (952)
Q Consensus 138 ~~G~D~~Glpie~~a~~~-------g~~~----------------------------------~~--------------- 161 (952)
++||||||+|||..|++. |..+ ++
T Consensus 88 p~G~d~tGlPIe~~aek~~~ei~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~k~~~k~~~~~~~~~~~ 167 (1084)
T PLN02959 88 PFAFHCTGMPIKASADKLAREIQQYGNPPVFPEEDEDEAAAVAAAKAEAEAAAAPPDKFKGKKSKAVAKSGTQKYQWEIM 167 (1084)
T ss_pred CCCcCCCCccHHHHHHHHHHHHHHcCCCcccccccccccccccccccccccccccHHHHHHHHHHHHHHhCCchHHHHHH
Confidence 999999999999998552 3221 01
Q ss_pred ------------------HHHHHHHHHHHHHHHcCCccccCCcccCCC--hhHHHHHHHHHHHHHHCCceeeeccccccC
Q 002217 162 ------------------TTLRNINRFRTQLKSLGFSYDWNREISTIE--PAYYKWTQWIFLQLLKRGLAYQAEVPVNWC 221 (952)
Q Consensus 162 ------------------~~~~~~~~~~~~l~~lgi~~Dw~~~~~T~~--~~~~~~v~~~f~~L~~kGliy~~~~~v~wc 221 (952)
|++.+...++++|++||+++||+|.|.|+| |.|.++++|+|.+|+++|+||+|.+||+||
T Consensus 168 ~~~~~~~~~i~~f~dp~~~~~yF~~~~~~~~k~lG~~iDW~r~f~T~d~np~y~~~v~wqf~~L~ekG~I~~g~rpv~wc 247 (1084)
T PLN02959 168 RSFGLPDSEIAKFQDPYHWLSYFPPLAKEDLKAFGLGCDWRRSFITTDVNPYYDAFVRWQFRKLKKKGKIVKDKRYTIYS 247 (1084)
T ss_pred hhcCCchhhhhhccCHHHHHHhccHHHHHHHHHhCceEeCCCCcCCCCCChhHHHHHHHHHHHHHHCCCEEecCeeeeeC
Confidence 111122556889999999999999999999 999999999999999999999999999999
Q ss_pred CCCCcccCchhhccCccccCCCCeEEeeccccchhhhhhhhHhhccCCCCCCchHHHHHHHhhhccCCCce--EEEEEec
Q 002217 222 PALGTVLANEEVVDGVSERGGHPVIRKPMRQWMLKITEYADRLLDDLDDLDWPESVKEMQRNWIGRSEGAE--MDFRVLD 299 (952)
Q Consensus 222 ~~~~t~ls~~Ev~~~~~~~~~~~~~~~~~~~~~~~i~~y~~~l~~~l~~~~~p~~~~~~~~~~i~~s~~~~--v~f~~~~ 299 (952)
|.|+|+||++|++++... +.+.| |+|++.+
T Consensus 248 p~~~t~ladhe~~~~e~~------------------------------------------------~~~~y~~ikf~v~~ 279 (1084)
T PLN02959 248 PLDGQPCADHDRASGEGV------------------------------------------------GPQEYVLIKMEVLP 279 (1084)
T ss_pred CCCCCCchhhHHhcCCCC------------------------------------------------CcceeEEEEEeecC
Confidence 999999999999875211 11112 4455432
Q ss_pred CC-C-----CccCcEEEEecCCcchhccccEEEECCCCccchhhcccc-c----hHHHH--HHHHHHhccchhhHhhhhh
Q 002217 300 SD-G-----QERDIKITVYTTRPDTIFGATYLVVAPEHPLLSSLVSTT-Q----SQNIE--EYKNLASRKSDLERTELQK 366 (952)
Q Consensus 300 ~~-~-----~~~~~~i~i~TT~P~Tl~g~~~v~v~p~~~y~~~~~~~~-~----~~~~~--~y~~~~~~~~~~~~~~~~~ 366 (952)
.. . ...+.+++||||||||||||++++|||+..|+.+.+.+. . ..... .|+.......++ ..+..
T Consensus 280 ~~~~~~~~~~~~~~~l~~aTtrPeTl~g~ta~~VnP~~~Y~~~~~~~~e~~i~s~~~~~~~~~q~~~~~~~~~--~~l~~ 357 (1084)
T PLN02959 280 PFPGKLKALEGKKVFLAAATLRPETMYGQTNCWVLPDGKYGAYEINDTEVFILTARAALNLAYQNFSKVPGKP--TCLVE 357 (1084)
T ss_pred cchhhhhhcCCCCeEEEEEeCccchhhhheeEEECCCCeEEEEEecCCeEEEEehhhhhhhHHhhhcccCCCc--EEEEE
Confidence 10 0 012478999999999999999999999999987765421 1 01111 233221111111 12345
Q ss_pred cccccccceEEecCCCCCc-ccEEecCcccCCCCCCceEecCCCChhhHHH----------HHHcCC--------ceeee
Q 002217 367 EKTGVFSGCYARNPASGEA-IPIWVADYVLGSYGTGAIMAVPAHDTRDHEF----------ALKFDI--------SIHSV 427 (952)
Q Consensus 367 ~~~~~l~g~~~~~P~~~~~-~pv~~~~~V~~~~GTG~V~~~Pah~~~D~~~----------~~~~~L--------~i~~v 427 (952)
.+|..|.|..+.||+++.+ +||++++||+++.|||+||+|||||++||.+ +++||| +++++
T Consensus 358 ~~G~~L~G~~~~~Pl~~~~~i~ilp~~~V~~~~GTGvV~~vPah~pdDy~~~~dl~~k~~~~~kygi~~~~~~~~~~i~i 437 (1084)
T PLN02959 358 LTGYDLIGLPLKSPLAFNEVIYALPMLTILTDKGTGVVTSVPSDSPDDYMALSDLKAKPALRAKYGVKDEWVLPFEVVPI 437 (1084)
T ss_pred EEHHHhCCCEEECCCCCCcceeEeceEEEeCCCCeeeEEeCCCCCHHHHHHHHhhccchhHHHHcCCCcccccccCCcCc
Confidence 5677899999999999987 9999999999999999999999999999997 578998 34667
Q ss_pred ecCCCCCCc-----------------------cccccccc---cceEEcccCcccccccCCCCHHHHHHHHHHHHHHcCC
Q 002217 428 VMPDDESSS-----------------------QSEKAYTG---EGLIVNSSNLISGLDINGLSCQEATSKVIEWAEKTGN 481 (952)
Q Consensus 428 v~~~~~~~~-----------------------~~~~~y~~---~g~l~~~~~~~~~~~~~gl~~~~a~~~ii~~l~~~~~ 481 (952)
|+..+ ..+ .+...|.. +|+|. . ..+.|+.+.+|+++|++.|.+.|.
T Consensus 438 id~~g-~G~~~a~~~~~~~~i~s~~d~~~l~~a~~~~Y~~~f~~g~m~-~------g~~~G~~v~eAr~~Ii~~L~~~G~ 509 (1084)
T PLN02959 438 INIPE-FGDKSAEKVCEDLKIKSQNDKEKLAEAKRLTYLKGFTDGTML-V------GEYAGRKVQEAKPLIKKKLIEAGQ 509 (1084)
T ss_pred cccCC-CCcchhHHHHHhhcccccchhhHHHHHhhhhhhhcccccccc-C------cCcCCcCHHHHHHHHHHHHHhCCC
Confidence 66542 110 01112221 35553 1 358999999999999999999985
Q ss_pred Ccc------e------------------------------------ecc--------------cCCceeecccCCCCccc
Q 002217 482 GKK------K------------------------------------VNY--------------KLRDWLFARQRYWGEPI 505 (952)
Q Consensus 482 ~~~------~------------------------------------~~~--------------~l~DW~ISRQR~WG~PI 505 (952)
... . +++ +++||||||||+|||||
T Consensus 510 l~~~~ep~~pv~~R~g~~~~v~l~~QWFi~~~~~~~k~~a~~~l~~v~~~P~~~~~~~~~wl~~l~DWciSRQr~wGtpI 589 (1084)
T PLN02959 510 AILYSEPEKKVMSRSGDECVVALTDQWYLTYGEEEWKKKAEKCLSKMNLYSDETRHGFEHTLGWLNQWACSRSFGLGTRI 589 (1084)
T ss_pred ceeeeEcCCCeEECCCCEEEEeecCCeeEECCchHHHHHHHHHHcccEEECHHHHHHHHHHHhCCCceeecccccCCCcC
Confidence 321 0 011 57899999999999999
Q ss_pred CceEeCCCCceeecCCCCcCCCCCcccccCC----CCCCCCCCccccccccccccCCCCCc-cccCCCcccccccc-chh
Q 002217 506 PVVFLDGTGETVPLHEAELPLTLPELDDFTP----TGTGEPPLSKAVSWVQTTEHSSGKPA-RRETSTMPQWAGSC-WYY 579 (952)
Q Consensus 506 Pv~~~~~~~~~~~~~~~~l~v~lp~~~~~~~----~G~~~~~l~~~~~w~~~~~~~~g~~~-~re~d~lD~WfdSs-wy~ 579 (952)
| |+|.- -+...+++++++....+..+.. .|.. .| .... +.++||+|+||+|+ |++
T Consensus 590 P-Wd~~~--~ieslsdstiy~a~yti~~~~~~~~~~g~~--------~~--------~i~~~~~~~dV~D~wF~Sg~~p~ 650 (1084)
T PLN02959 590 P-WDEQF--LIESLSDSTIYMAYYTVAHLLQGGDMYGKD--------KS--------SIKPEQMTDEVWDFVFCGGPLPK 650 (1084)
T ss_pred C-cccce--eeccCCCCceeechhhHHHHHhhhhccCCc--------cc--------cCChhhcCccceeEeecCCCccc
Confidence 9 64421 1122233343332211111110 1110 11 0011 22689999999986 776
Q ss_pred heecCCCCchhHhhhhhhhcCCCceeEecCchhhHHHHHHHHHHHHHHHHhcCcCCCCcc-hhhhhhceeccccceeEEe
Q 002217 580 LRFMDPKNSKELVDKTKERYWSPVDVYVGGAEHAVLHLLYARFWHKVLYDIGVVSTKEPF-KCVINQGIILGEMQYMVCK 658 (952)
Q Consensus 580 ~~~~~p~~~~~~~~~~~~~~w~PvDlyv~G~D~~~~HLly~Rfw~~~L~~~~~~~~~~PF-k~l~~~G~vl~~~~y~~~~ 658 (952)
.. ++|...-+.. +...++|||+|+|++|+||+.+||+|++++|.++++ +.|| +.+++||||+.
T Consensus 651 ~t-~~p~~~l~~~-r~ef~~~yP~Dl~~sG~Dii~~wl~~~l~~~~al~~------~~P~p~~v~v~G~V~~-------- 714 (1084)
T PLN02959 651 SS-DIPAELLEKM-KQEFEYWYPFDLRVSGKDLIQNHLTFAIYNHTAIWA------EEHWPRGFRCNGHLML-------- 714 (1084)
T ss_pred cc-CCCHHHHhhh-hHHHHhhCCCeEEEecccHHHHHHHHHHHHHHHhcC------CCCCCceEEEccEEec--------
Confidence 55 5554321111 122478999999999999999999998888877654 6899 56999998862
Q ss_pred cCCCccccCCCCCcccccccccCccccccccCCceeeccCcchhhcccccccccCCCCCCChhhHHhhhCchhhhhhhhh
Q 002217 659 DVDGSYISADSTDTLGEYEQESIPEEKVMKSGDFFVMKDNPNIRLIARAHKMSKSRGNVVNPDDVVTEYGADSLRLYEMF 738 (952)
Q Consensus 659 d~~g~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~vl~~~~~~~v~~~g~KMSKSkGNvV~P~eii~~YGaDalRl~ll~ 738 (952)
+|+|||||+||+|+|.++|++||||++|||+++
T Consensus 715 -----------------------------------------------~G~KMSKSkGNvI~p~diI~kyGADalRl~la~ 747 (1084)
T PLN02959 715 -----------------------------------------------NSEKMSKSTGNFLTLRQAIEEFSADATRFALAD 747 (1084)
T ss_pred -----------------------------------------------CCcCccccCCCcCCHHHHHHHhCchHHHHHHhh
Confidence 389999999999999999999999999999998
Q ss_pred cCCCCCCCCCChhhHHHHHHHHHHHHHHHhccCCCCCCCCCCccCCCCCChHHHHHHHHHHHHHHHHHHhcCChHHHHHH
Q 002217 739 MGPFRDSKTWNTSGIEGVHRFLGRMWRLIVGSSLPDGTFKGGTVVNDEEPTLEQLCTLHKCIAKVTEEIEGTRFNTGISA 818 (952)
Q Consensus 739 ~~~~~~~~~~s~~~i~~~~r~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~d~~~l~~l~~~i~~v~~~~e~~~f~~ai~~ 818 (952)
+++..+|.+|+++....+++.++++++++.........+... ......|+|++++++.++++++++|++|+|+.|++.
T Consensus 748 ~~~~~~D~nF~~k~~n~~~~~l~n~~~~~~~~~~~~~~~~~~--~~~~~~D~wils~l~~~i~~v~~a~e~y~f~~A~~~ 825 (1084)
T PLN02959 748 AGDGVDDANFVFETANAAILRLTKEIAWMEEVLAAESSLRTG--PPSTYADRVFENEINIAIAETEKNYEAMMFREALKS 825 (1084)
T ss_pred cCCccCCCCccHHHHHHHHHHHHHHHHHHHHhhhhhcccCCc--ccCCHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHH
Confidence 888889999998888877777777776653321110111111 112346899999999999999999999999999987
Q ss_pred H-HHHHHHHh--c-cc-------chhHHHHHHHHHHhCCcchhHHHHHHHHc-CCCCCccccCCCCCC
Q 002217 819 M-MEFINAAY--K-WE-------KHPRKIIEPFILLLAPYAPHMSEELWFRL-GHSNSLAYESFPKAN 874 (952)
Q Consensus 819 l-~~f~~~~~--~-~~-------~~~~~vL~~l~~LLaPf~P~iaEElw~~L-~~~~sV~~~~WP~~~ 874 (952)
. ++|.+... + +. ..++++|+.+++||||||||+|||||+.| +..+||+++.||.++
T Consensus 826 ~~Yel~~~k~~yr~~~~~~~~~~~~L~~vl~~~l~LLaP~~PfiaEEiW~~l~~~~~sI~~~~wP~~~ 893 (1084)
T PLN02959 826 GFYDLQAARDEYRLSCGSGGMNRDLVWRFMDVQTRLITPICPHYAEHVWREILKKEGFAVTAGWPVAG 893 (1084)
T ss_pred HHHHHHHhHHHHhhccccchHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHhccCCCCeEEecCCCCCC
Confidence 4 43443322 1 11 14568999999999999999999999999 667899999999875
No 23
>TIGR00395 leuS_arch leucyl-tRNA synthetase, archaeal and cytosolic family. The leucyl-tRNA synthetases belong to two families so broadly different that they are represented by separate models. This model includes both archaeal and cytosolic eukaryotic leucyl-tRNA synthetases; the eubacterial and mitochondrial forms differ so substantially that some other tRNA ligases score higher by this model than does any eubacterial LeuS.
Probab=100.00 E-value=2.9e-112 Score=1058.75 Aligned_cols=658 Identities=24% Similarity=0.413 Sum_probs=505.1
Q ss_pred hhhHHHHHHHHHcCCCCCCCCCCCCCCcEEEEcCCCCCCCCCCCCchhHHHHHHHHHHHHHHHcCCcccccccccccChH
Q 002217 68 EIEPKWQSYWENNRTFRTPDEIDTSKPKFYVLDMFPYPSGAGLHVGHPLGYTATDILARLKRMQGYNVLHPMGWDAFGLP 147 (952)
Q Consensus 68 ~iE~k~~~~W~~~~~f~~~~~~~~~k~kf~i~~~~Pypng~~lHiGH~~~~~~~Di~~Ry~r~~G~~V~~~~G~D~~Glp 147 (952)
++|++||++|+++++|+... + ++++|+|++||||+||. |||||+++++++|+++||+||+|++|+|++||||||+|
T Consensus 2 ~iE~k~~~~W~~~~~fe~~~--~-~~~kf~i~~ppPy~nG~-lH~GH~~~~~~~D~~aRy~Rm~G~~vl~p~G~d~~G~p 77 (938)
T TIGR00395 2 AIEKKWQKRWEEAHIFEADP--D-DREKFFLTMAYPYLNGV-MHAGHCRTFTIPEVSARFERMKGKNVLFPLGFHVTGTP 77 (938)
T ss_pred hHHHHHHHHHHhCCCcccCC--C-CCCceEEecCCCCCCCC-cccchhhhhhHHHHHHHHHHhcCCccCCCCccCCCCCc
Confidence 69999999999999999763 2 58899999999999998 99999999999999999999999999999999999999
Q ss_pred HHHHHHHh---------------C---------CCchHHHHHHHHHHHHHHHHcCCccccCCcccCCChhHHHHHHHHHH
Q 002217 148 AEQYAIET---------------G---------THPKITTLRNINRFRTQLKSLGFSYDWNREISTIEPAYYKWTQWIFL 203 (952)
Q Consensus 148 ie~~a~~~---------------g---------~~~~~~~~~~~~~~~~~l~~lgi~~Dw~~~~~T~~~~~~~~v~~~f~ 203 (952)
|+..|.+. + .+|.++++++...++++|++||+++||+|+|.|+||.|.++|+|+|.
T Consensus 78 i~~~aek~~~~~~~~~~~~~~~~~i~~~~i~~~~~~~~~~~~~~~~~~~~~~~lG~s~DW~r~~~T~dp~y~~~v~~~f~ 157 (938)
T TIGR00395 78 ILGLAELIKRRDELTIKNYTEVHAIPREELLKFTDPEYIVEYFSREAESACKSMGYSIDWRRSFKTTDPYYDRFIEWQMN 157 (938)
T ss_pred hHHHHHHhhhhhhhccccchhhccCCHHHHHhhcCHHHHHHHHHHHHHHHHHHhCceEECCCCccCCChhHHHHHHHHHH
Confidence 99887652 1 23467788899999999999999999999999999999999999999
Q ss_pred HHHHCCceeeeccccccCCCCCcccCchhhccCccccCCCCeEEeeccccchhhhhhhhHhhccCCCCCCchHHHHHHHh
Q 002217 204 QLLKRGLAYQAEVPVNWCPALGTVLANEEVVDGVSERGGHPVIRKPMRQWMLKITEYADRLLDDLDDLDWPESVKEMQRN 283 (952)
Q Consensus 204 ~L~~kGliy~~~~~v~wc~~~~t~ls~~Ev~~~~~~~~~~~~~~~~~~~~~~~i~~y~~~l~~~l~~~~~p~~~~~~~~~ 283 (952)
+|+++|+||++.++|+|||.|+|+||++|+.++....
T Consensus 158 ~L~e~G~iy~g~~~v~wcp~~~t~lsd~e~~~~e~~~------------------------------------------- 194 (938)
T TIGR00395 158 KLKELGLIVKGEHPVRYCPKDGNPVEDHDLLSGEGVT------------------------------------------- 194 (938)
T ss_pred HHHHCCCEecCCeeEeecCCCCCCCchhHhccCCccc-------------------------------------------
Confidence 9999999999999999999999999999998652110
Q ss_pred hhccCCCceEEEEEecCCCCccCcEEEEecCCcchhccccEEEECCCCccchhhccccc----hHHHHHHHHHHhccchh
Q 002217 284 WIGRSEGAEMDFRVLDSDGQERDIKITVYTTRPDTIFGATYLVVAPEHPLLSSLVSTTQ----SQNIEEYKNLASRKSDL 359 (952)
Q Consensus 284 ~i~~s~~~~v~f~~~~~~~~~~~~~i~i~TT~P~Tl~g~~~v~v~p~~~y~~~~~~~~~----~~~~~~y~~~~~~~~~~ 359 (952)
..++++|+|++.+. +.+++|||||||||+|++||+|||+++|+.+.+.++. +..++.+.. ....+
T Consensus 195 ---~~~~~~ikf~~~~~-----~~~l~~aTtRPETl~g~tav~V~P~~~Y~~~~~~~e~~i~s~~~~~~~~~---q~~~~ 263 (938)
T TIGR00395 195 ---IVEYILIKFELEDG-----AFYFVAATLRPETVYGVTNCWVNPTITYVIAEVGGEKWITSKEAFENLSY---QKLKY 263 (938)
T ss_pred ---cceEEEEEEEcCCC-----ceEEEEeeCCcchhhcceeEEECCCCcEEEEEeCCcEEEEeHHHHHhhhh---cccce
Confidence 12446899998431 2589999999999999999999999999877654331 111222111 11111
Q ss_pred hHhhhhhcccccccceEEecCCCCCcccEEecCcccCCCCCCceEecCCCChhhHHHHHHc--------------CCcee
Q 002217 360 ERTELQKEKTGVFSGCYARNPASGEAIPIWVADYVLGSYGTGAIMAVPAHDTRDHEFALKF--------------DISIH 425 (952)
Q Consensus 360 ~~~~~~~~~~~~l~g~~~~~P~~~~~~pv~~~~~V~~~~GTG~V~~~Pah~~~D~~~~~~~--------------~L~i~ 425 (952)
..+...+++.|.|+++.||++++++||++++||++++|||+||+|||||++||++++++ +++++
T Consensus 264 --~~~~~~~g~~l~G~~~~~P~~~~~ipil~~~~V~~~~GTGvV~~~Pah~p~Dy~~~~~l~~~~~~~gi~~~~~~~~~i 341 (938)
T TIGR00395 264 --KPIEEVPGKQFIGKKVHNPVVGPEVPILPAEFVDTTKGTGVVMSVPAHAPDDYIALEDLLHDPEYLGIKPVVIDIEPV 341 (938)
T ss_pred --eEEEEEchHhccCCEEECCCCCCeeEEeecceeecCCCcceEEeCCCCCHHHHHHHHHhhhcchhcCCcchhcccCCc
Confidence 12344567889999999999999999999999999999999999999999999998863 35556
Q ss_pred eeecCCC-CCCc---------------------cccccccc---cceEEcccCcccccccCCCCHHHHHHHHHHHHHHcC
Q 002217 426 SVVMPDD-ESSS---------------------QSEKAYTG---EGLIVNSSNLISGLDINGLSCQEATSKVIEWAEKTG 480 (952)
Q Consensus 426 ~vv~~~~-~~~~---------------------~~~~~y~~---~g~l~~~~~~~~~~~~~gl~~~~a~~~ii~~l~~~~ 480 (952)
++++.++ |.+. .+...|.+ +|+|.... ..+.|+++.+|+++|+++|.+.|
T Consensus 342 ~ii~~~~~g~~~a~~~~~~~~i~~~~d~~~l~~a~~~~y~~~f~~G~m~~~~-----~~~~G~~v~ear~~i~~~L~~~g 416 (938)
T TIGR00395 342 PLIHTDGYGDLPAKEIVEEKGIKSQKDKNLLEEATKILYKEEYHTGVMIYNI-----PPYKGMKVSEAKEKVKADLIDAG 416 (938)
T ss_pred cceecCCCCcccHHHHHHHhcCCCchhhhHHHHHHHHHhhhhccCceeccCC-----cccCCcCHHHhHHHHHHHHHHCC
Confidence 6654431 2121 01234444 57765321 35999999999999999999988
Q ss_pred CCccee--------------------------c-----c---------------------------cCCceeecccCCCC
Q 002217 481 NGKKKV--------------------------N-----Y---------------------------KLRDWLFARQRYWG 502 (952)
Q Consensus 481 ~~~~~~--------------------------~-----~---------------------------~l~DW~ISRQR~WG 502 (952)
.+.... + | +++||||||||+||
T Consensus 417 ~~~~~~~~~~~~v~~R~g~~~vv~~~~~QWFi~~~~~~~k~~~~~~l~~~~~~P~~~~~~~~~~l~~l~DW~ISRqr~WG 496 (938)
T TIGR00395 417 LADVMYEFSESPVICRCGTDCIVKVVEDQWFVKYSDESWKELAHECLEGMRIIPEEVKNAFEGKIDWLKDWACCRRYGLG 496 (938)
T ss_pred CceEeeecCCCCcEecCCCeEEEeccCCCCeEEcCcHHHHHHHHHHHhcCEEeCHHHHHHHHHHHhhhhhcccccccccC
Confidence 753210 0 1 27899999999999
Q ss_pred cccCceEeCCCCceeecCCCCcCCCCCcccccCCCCCCCCCCccccccccccccCCCCCccccCCCccccccccchhhee
Q 002217 503 EPIPVVFLDGTGETVPLHEAELPLTLPELDDFTPTGTGEPPLSKAVSWVQTTEHSSGKPARRETSTMPQWAGSCWYYLRF 582 (952)
Q Consensus 503 ~PIPv~~~~~~~~~~~~~~~~l~v~lp~~~~~~~~G~~~~~l~~~~~w~~~~~~~~g~~~~re~d~lD~WfdSswy~~~~ 582 (952)
||||+ .. ...+.+++++.+++..-.+..+ +. +..++. -...++++|.||.++-..+..
T Consensus 497 tpIP~-d~--~~~ieslsdstiY~~~~~i~~~----------------l~--~~~~~~-~~l~~ev~D~~~~~~~~~~~t 554 (938)
T TIGR00395 497 TRLPW-DE--KWLIESLSDSTIYMAYYTIAHY----------------LN--KDYYGN-EQMTDEFFDYIFLGKGDVKNT 554 (938)
T ss_pred cccce-ee--cEEeeecchhhhhhhhccHHHH----------------hh--ccCCCh-HHCCcccCceEEECCCChhhc
Confidence 99995 21 1122334444444321111100 00 001111 012457788888543111222
Q ss_pred cCCCCchhHhh--hhhhhcCCCceeEecCchhhHHHHHHHHHHHHHHHHhcCcCCCCcc-hhhhhhceeccccceeEEec
Q 002217 583 MDPKNSKELVD--KTKERYWSPVDVYVGGAEHAVLHLLYARFWHKVLYDIGVVSTKEPF-KCVINQGIILGEMQYMVCKD 659 (952)
Q Consensus 583 ~~p~~~~~~~~--~~~~~~w~PvDlyv~G~D~~~~HLly~Rfw~~~L~~~~~~~~~~PF-k~l~~~G~vl~~~~y~~~~d 659 (952)
..|. ..+. +...++|||+|++++|+||+.+|+.|.+|.|.+++. ..|| +.+++||||+.
T Consensus 555 ~~~~---~~~~~~~~ef~~~yP~D~~~~GkDii~~H~~~~i~~~~a~~~------~~~~Pk~i~~~G~vl~--------- 616 (938)
T TIGR00395 555 NIPL---PAIQKLRREFEYWYPLDWRISGKDLIPNHLTFYIFHHVAIFP------EKFWPRGIVVNGYVML--------- 616 (938)
T ss_pred CCCH---HHHHHHHHHHhhcCCceEEEEeeccccchHHHHHHHHHHcCC------ccccCcEEEEeceEEe---------
Confidence 2222 1121 223478999999999999999999988777765443 3456 89999999874
Q ss_pred CCCccccCCCCCcccccccccCccccccccCCceeeccCcchhhcccccccccCCCCCCChhhHHhhhCchhhhhhhhhc
Q 002217 660 VDGSYISADSTDTLGEYEQESIPEEKVMKSGDFFVMKDNPNIRLIARAHKMSKSRGNVVNPDDVVTEYGADSLRLYEMFM 739 (952)
Q Consensus 660 ~~g~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~vl~~~~~~~v~~~g~KMSKSkGNvV~P~eii~~YGaDalRl~ll~~ 739 (952)
+|+|||||+||+|+|.++|++||||++|||++++
T Consensus 617 ----------------------------------------------~G~KMSKSlGNvI~p~d~i~~yGaDalRl~Ll~~ 650 (938)
T TIGR00395 617 ----------------------------------------------EGKKMSKSKGNVLTLEQAVEKFGADVARLYIADA 650 (938)
T ss_pred ----------------------------------------------CCccccCcCCCCCCHHHHHHHcChHHHHHHHHhc
Confidence 2899999999999999999999999999999998
Q ss_pred CCCCCCCCCChhhHHHHHHHHHHHHHHHhccCCCCCCCCCCccCCCCCChHHHHHHHHHHHHHHHHHHhcCChHHHH-HH
Q 002217 740 GPFRDSKTWNTSGIEGVHRFLGRMWRLIVGSSLPDGTFKGGTVVNDEEPTLEQLCTLHKCIAKVTEEIEGTRFNTGI-SA 818 (952)
Q Consensus 740 ~~~~~~~~~s~~~i~~~~r~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~d~~~l~~l~~~i~~v~~~~e~~~f~~ai-~~ 818 (952)
++..+|.+|+++.+.++.++|.++++++...... .....+ ......|+|+++++++++++++++|++|+|+.|+ +.
T Consensus 651 ~~~~~D~~fs~~~~~~~~~~l~~l~n~~~~~~~~-~~~~~~--~~~~~~D~wlls~l~~~i~~v~~a~e~~~~~~Al~~~ 727 (938)
T TIGR00395 651 AETVQDADWKESEVEGTILRLERLYEFAEEITKE-SNLETG--EETSFIDRWLESRMNAAIKETYEAMENFQTRKAVKYA 727 (938)
T ss_pred CCCCCCCCcCHHHHHHHHHHHHHHHHHHHHHHhh-cccCCC--ccCChHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHH
Confidence 8999999999999999999999999987432110 000000 0123458899999999999999999999999999 77
Q ss_pred HHHHHHHHhcccc--------hhHHHHHHHHHHhCCcchhHHHHHHHHcCCCCCccccCCCCCCccccC
Q 002217 819 MMEFINAAYKWEK--------HPRKIIEPFILLLAPYAPHMSEELWFRLGHSNSLAYESFPKANPDYLK 879 (952)
Q Consensus 819 l~~f~~~~~~~~~--------~~~~vL~~l~~LLaPf~P~iaEElw~~L~~~~sV~~~~WP~~~~~~l~ 879 (952)
+++|++.++.+.. .+.++|+.+++||+|||||+|||||+.|+..+||+++.||++++..++
T Consensus 728 l~~~~~~~n~Yl~~~~~~~~~~l~~~l~~~~~LLaP~~P~~aEeiw~~Lg~~~sv~~~~wP~~~~~~~d 796 (938)
T TIGR00395 728 LFDLQADVDWYRRRGGVNHKDVLARYLETWIKLLAPFAPHFAEEMWEEVGNEGFVSLAKFPEASEPAVD 796 (938)
T ss_pred HHHHHHHHHHHHHhCcchHHHHHHHHHHHHHHHhcCcccHHHHHHHHHcCCCCeEEecCCCCCCcccCC
Confidence 9999987643211 345799999999999999999999999998889999999998876544
No 24
>PF00133 tRNA-synt_1: tRNA synthetases class I (I, L, M and V); InterPro: IPR002300 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. The class Ia aminoacyl-tRNA synthetases consist of the isoleucyl, methionyl, valyl, leucyl, cysteinyl, and arginyl-tRNA synthetases; the class Ib include the glutamyl and glutaminyl-tRNA synthetases, and the class Ic are the tyrosyl and tryptophanyl-tRNA synthetases [].; GO: 0000166 nucleotide binding, 0004812 aminoacyl-tRNA ligase activity, 0005524 ATP binding, 0006418 tRNA aminoacylation for protein translation, 0005737 cytoplasm; PDB: 1OBC_A 2AJH_B 4ARI_A 2AJG_B 4AQ7_D 2AJI_B 4ARC_A 4AS1_A 1QU3_A 1QU2_A ....
Probab=100.00 E-value=1.9e-111 Score=1011.98 Aligned_cols=526 Identities=34% Similarity=0.617 Sum_probs=393.0
Q ss_pred HHHHHHHHcCCCCCCCCCCCCCCcEEEEcCCCCCCCCCCCCchhHHHHHHHHHHHHHHHcCCcccccccccccChHHHHH
Q 002217 72 KWQSYWENNRTFRTPDEIDTSKPKFYVLDMFPYPSGAGLHVGHPLGYTATDILARLKRMQGYNVLHPMGWDAFGLPAEQY 151 (952)
Q Consensus 72 k~~~~W~~~~~f~~~~~~~~~k~kf~i~~~~Pypng~~lHiGH~~~~~~~Di~~Ry~r~~G~~V~~~~G~D~~Glpie~~ 151 (952)
|||++|+++++|+...+.++++++|++++||||+||. |||||++|++++|+++||+||+||+|++++||||||+|||.+
T Consensus 1 k~~~~W~~~~~~~~~~~~~~~~~~f~i~~~PPy~nG~-lH~GH~~~~~~~D~i~Ry~rm~G~~v~~~~G~D~~Glpie~~ 79 (601)
T PF00133_consen 1 KWQKFWEENKLFEKQLEKNKNKPKFFIHDPPPYANGD-LHIGHALNKTIKDIIARYKRMQGYNVLFPPGWDCHGLPIEAK 79 (601)
T ss_dssp HHHHHHHHTTCCHHHHHCTTTSGEEEEEE---BTSSS--BHHHHHHHHHHHHHHHHHHCTTSEEEEEEEEB--SHHHHHH
T ss_pred CHhHHHhhCCCcccccccCCCCCcEEEEeCCCCCCCc-ccHHHHHHHHHHHHHHHHHHhCCcEeCCCCCcCCCCcchhhh
Confidence 7999999999999875556789999999999999998 999999999999999999999999999999999999999998
Q ss_pred HHHh-CCC----------------chHHHHHHHHHHHHHHHHcCCccccCCcccCCChhHHHHHHHHHHHHHHCCceeee
Q 002217 152 AIET-GTH----------------PKITTLRNINRFRTQLKSLGFSYDWNREISTIEPAYYKWTQWIFLQLLKRGLAYQA 214 (952)
Q Consensus 152 a~~~-g~~----------------~~~~~~~~~~~~~~~l~~lgi~~Dw~~~~~T~~~~~~~~v~~~f~~L~~kGliy~~ 214 (952)
+++. |.. +++++.++++.+++||++||+++||+++|.|+||.|.++++|+|.+|+++||||++
T Consensus 80 vek~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lG~~~Dw~~~y~T~d~~y~~~v~~~F~~l~~kglIyr~ 159 (601)
T PF00133_consen 80 VEKKLGIKEKKDRKDLGREEFREECREWAEEFIEEQKEQFKRLGVSIDWDREYFTMDPEYEKFVWWQFKKLYEKGLIYRG 159 (601)
T ss_dssp HHHHTTTTSHHHCSCSTHHHHHHHHHHHHHHHHHHHHHHHHHTT--SECTCEEETTSHHHHHHHHHHHHHHHHTTSEEEE
T ss_pred HHHhhcccccccccccccccchhhhcchhhhhhhhhhhhhhheeeecccCCceEECCccHhHHHHHHHHHHHhcCcEEee
Confidence 8763 431 56788999999999999999999999999999999999999999999999999999
Q ss_pred ccccccCCCCCcccCchhhccCccccCCCCeEEeeccccchhhhhhhhHhhccCCCCCCchHHHHHHHhhhccCCCceEE
Q 002217 215 EVPVNWCPALGTVLANEEVVDGVSERGGHPVIRKPMRQWMLKITEYADRLLDDLDDLDWPESVKEMQRNWIGRSEGAEMD 294 (952)
Q Consensus 215 ~~~v~wc~~~~t~ls~~Ev~~~~~~~~~~~~~~~~~~~~~~~i~~y~~~l~~~l~~~~~p~~~~~~~~~~i~~s~~~~v~ 294 (952)
.+||+|||.|+|+||++||++.. . .+.+++|+
T Consensus 160 ~~pv~w~p~~~t~lsd~Ev~~~~--~----------------------------------------------~~~~~~v~ 191 (601)
T PF00133_consen 160 KKPVNWCPSCQTALSDHEVEYKE--V----------------------------------------------KSPSIYVK 191 (601)
T ss_dssp EEEEEEETTTTEEE-GGGEEEEE--E----------------------------------------------EEEEEEEE
T ss_pred CCCCCcCcccccchhhhhccccc--c----------------------------------------------cCceEEEE
Confidence 99999999999999999997421 0 24567899
Q ss_pred EEEecCCCCccCcEEEEecCCcchhccccEEEECCCCccchhhccccchHHHHHHHHHHhccchhhHhhhhhcccccccc
Q 002217 295 FRVLDSDGQERDIKITVYTTRPDTIFGATYLVVAPEHPLLSSLVSTTQSQNIEEYKNLASRKSDLERTELQKEKTGVFSG 374 (952)
Q Consensus 295 f~~~~~~~~~~~~~i~i~TT~P~Tl~g~~~v~v~p~~~y~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~l~g 374 (952)
|++.+.+ +.+|+||||||||||||+||+|||+..|+ ..++.-...+............. +...++..|.|
T Consensus 192 f~~~~~~----~~~l~i~TtrPeTl~~~~ai~vnP~~~Y~---~~~~~~i~~~~~~~~~~~~~~~~---~~~~~g~~L~g 261 (601)
T PF00133_consen 192 FPLKDGE----EVYLVIWTTRPETLPGNTAIAVNPDFDYV---INGERYIVAKDLVEKLSKQEKTK---LEDFRGKELVG 261 (601)
T ss_dssp EEESSSS----EEEEEEEES-GGGGGG-BEEEE-TTSEEE---ETTEEEEEEHHHHHHHHTTTSSS---EEEEECHHHTT
T ss_pred EEecCcc----ceEEEEEechhhHHhCCeeEEECCCccce---eCCeeehHHHHHHHHHHhhhhhc---ccccCcceecC
Confidence 9995432 26999999999999999999999999997 22211111122222211111111 44566778999
Q ss_pred eEEecCCCCCcccEEecCcccCCCCCCceEecCCCChhhHHHHHHcCCceeeeecCCCCCCccccccccccceEEcccCc
Q 002217 375 CYARNPASGEAIPIWVADYVLGSYGTGAIMAVPAHDTRDHEFALKFDISIHSVVMPDDESSSQSEKAYTGEGLIVNSSNL 454 (952)
Q Consensus 375 ~~~~~P~~~~~~pv~~~~~V~~~~GTG~V~~~Pah~~~D~~~~~~~~L~i~~vv~~~~~~~~~~~~~y~~~g~l~~~~~~ 454 (952)
+++.||++++.+||++++||+++.|||+||+|||||++||+++++++|+++++|+++ |.+.+..
T Consensus 262 ~~~~~P~~~~~~~vi~~~~V~~~~GTGiV~~~Pah~~~Dy~~~~~~~l~~~~~id~~-G~~~~~~--------------- 325 (601)
T PF00133_consen 262 LKYIHPLTGREVPVIPDDFVDMDKGTGIVHSAPAHGPDDYEIGKKHNLPIINPIDED-GRFTEEA--------------- 325 (601)
T ss_dssp SEEE-TTSSSSEEEEEETTS-SSSTTSEEEE-TTT-HHHHHHHHHHHHCCGCCCCCT-STBBSCC---------------
T ss_pred cEeccccccceeEEEcccccccccchhhhhhcccCCHHHHHHHhhcCceeeEecCCC-ceEeecc---------------
Confidence 999999999999999999999999999999999999999999999999999999986 3322211
Q ss_pred ccccccCCCCHHHHHHHHHHHHHHcCCCcce------------------------------------------ec-----
Q 002217 455 ISGLDINGLSCQEATSKVIEWAEKTGNGKKK------------------------------------------VN----- 487 (952)
Q Consensus 455 ~~~~~~~gl~~~~a~~~ii~~l~~~~~~~~~------------------------------------------~~----- 487 (952)
..+.|+.+.+|++.|++.|.+.|..... ++
T Consensus 326 ---~~~~G~~v~~ar~~ii~~L~~~g~l~~~~~~~~~~p~c~R~~~~ii~~~~~QWFi~~~~~k~~~l~~~~~i~~~P~~ 402 (601)
T PF00133_consen 326 ---GKFKGMKVFEAREKIIEDLKEKGLLLKIEEIEHSYPHCWRSGTPIIPRLTDQWFIKYDDWKKKALEALEKIKFYPES 402 (601)
T ss_dssp ---STTTTSBHHHHHHHHHHHHHHTTSEEEEEEEEEEEEEETTTSCBEEEEEEEEEEEEHHHHHHHHHHHHHTSEESSST
T ss_pred ---cccCCceeeeccHHHHHHHHHhhhhccccccccccceecCCCCEEEecccceeEEecHHhHHHHHhhcccceEEccc
Confidence 2588999999999999999998874221 00
Q ss_pred ---------ccCCceeecccCCCCcccCceEeCCCCceeecCCCCcCCCCCcccccCCCCCCCCCCccccccccccccCC
Q 002217 488 ---------YKLRDWLFARQRYWGEPIPVVFLDGTGETVPLHEAELPLTLPELDDFTPTGTGEPPLSKAVSWVQTTEHSS 558 (952)
Q Consensus 488 ---------~~l~DW~ISRQR~WG~PIPv~~~~~~~~~~~~~~~~l~v~lp~~~~~~~~G~~~~~l~~~~~w~~~~~~~~ 558 (952)
.+++||||||||+||+|||+|+|++|+... +.++.+++.. ......|.+....... ...++.|
T Consensus 403 ~~~~~~~~i~~l~DWcISRQR~WG~PIPiw~~~~~~~~~-~~~~~~~~~~---~~~~~~~~~~~~~~~~----~~~~~~~ 474 (601)
T PF00133_consen 403 YRKRFENWIDNLRDWCISRQRYWGTPIPIWYCEDCGEVL-VIESTIELIA---DRVEKEGIDAWLHKPA----EDKLPCC 474 (601)
T ss_dssp CHHHHHHHHHT--EEE-EESSSSSEBETEEEETTSEEEE-CCGGHHHHHH---HHSTHHHHSCTSSHHH----HHHHTTT
T ss_pred chhhhhhhccccccchhhccCCCCccceeeecccCcccc-cccccccccc---cccccccccccccccc----ccccccc
Confidence 147899999999999999999998876443 3333222110 0011112111111011 1234788
Q ss_pred CCCccccCCCcccccccc-chhheecCCCCchhHhhhhhhhcCCCceeEecCchhhHHHHHHHHHHHHHHHHhc-CcCCC
Q 002217 559 GKPARRETSTMPQWAGSC-WYYLRFMDPKNSKELVDKTKERYWSPVDVYVGGAEHAVLHLLYARFWHKVLYDIG-VVSTK 636 (952)
Q Consensus 559 g~~~~re~d~lD~WfdSs-wy~~~~~~p~~~~~~~~~~~~~~w~PvDlyv~G~D~~~~HLly~Rfw~~~L~~~~-~~~~~ 636 (952)
+..++|++|||||||||+ |++....+|++.. ...++|||+|+|++|+||+ |+|+.+++..+ ++..+
T Consensus 475 ~~~~~~~~dvlD~WfdSg~~~~~~~~~~~~~~-----~~~~~~~P~D~~~~G~D~~-------~~W~~~~l~~~~~l~~~ 542 (601)
T PF00133_consen 475 GGELRRDTDVLDTWFDSGLWPFAVLGWPENDR-----EEFEYWYPVDLYIEGKDQI-------RGWFQSSLFLSVALFGK 542 (601)
T ss_dssp SSEEEEHS-EE-HHHHHCTCHHHHTTSTTCSC-----HHHHHHSSBSEEEEEGGGT-------TTHHHHHHHHHHHHSSS
T ss_pred ccceEEeeeeccccccccCCcccccccccccc-----hhccccCCcccccCCccch-------hhHHHHhHhhccccccC
Confidence 999999999999999997 5666667787632 2237899999999999998 66654443333 34568
Q ss_pred CcchhhhhhceeccccceeEEecCCCccccCCCCCcccccccccCccccccccCCceeeccCcchhhcccccccccCCCC
Q 002217 637 EPFKCVINQGIILGEMQYMVCKDVDGSYISADSTDTLGEYEQESIPEEKVMKSGDFFVMKDNPNIRLIARAHKMSKSRGN 716 (952)
Q Consensus 637 ~PFk~l~~~G~vl~~~~y~~~~d~~g~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~vl~~~~~~~v~~~g~KMSKSkGN 716 (952)
+||++|++||||+++ +|+|||||+||
T Consensus 543 ~pfk~v~~hG~vld~------------------------------------------------------~G~KMSKS~GN 568 (601)
T PF00133_consen 543 EPFKKVITHGFVLDE------------------------------------------------------DGRKMSKSKGN 568 (601)
T ss_dssp TSBSEEEEE--EEET------------------------------------------------------TSSB-BTTTTB
T ss_pred Cchheeeeccccccc------------------------------------------------------ceeecccCCCc
Confidence 899999999999864 38999999999
Q ss_pred CCChhhHHhhhCchhhhhhhhhcCCCCCCCCCC
Q 002217 717 VVNPDDVVTEYGADSLRLYEMFMGPFRDSKTWN 749 (952)
Q Consensus 717 vV~P~eii~~YGaDalRl~ll~~~~~~~~~~~s 749 (952)
+|+|.++|++||||++|||+++++.+.+|.+||
T Consensus 569 vi~p~~ii~~yGaD~lRl~~~~~~~~~~D~~~s 601 (601)
T PF00133_consen 569 VIDPEDIIEKYGADALRLWLASSADPGQDINFS 601 (601)
T ss_dssp --BHHHHHHHT-HHHHHHHHHHHS-TTS-EEE-
T ss_pred ccCHHHHHHHhCcHHHHHHHHhcCCcccCcccC
Confidence 999999999999999999999889999888875
No 25
>KOG0433 consensus Isoleucyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=3.4e-107 Score=913.54 Aligned_cols=676 Identities=23% Similarity=0.338 Sum_probs=505.5
Q ss_pred cCCChhhhhHHHHHHHHHcCCCCCCCCCCCCCCcEEEEcCCCCCCCCCCCCchhHHHHHHHHHHHHHHHcCCcccccccc
Q 002217 62 RAYPFHEIEPKWQSYWENNRTFRTPDEIDTSKPKFYVLDMFPYPSGAGLHVGHPLGYTATDILARLKRMQGYNVLHPMGW 141 (952)
Q Consensus 62 ~~y~~~~iE~k~~~~W~~~~~f~~~~~~~~~k~kf~i~~~~Pypng~~lHiGH~~~~~~~Di~~Ry~r~~G~~V~~~~G~ 141 (952)
-++|....|.+.++-|....+++... .+.+++.|.++| +||. |||||++|++++||+.||+-++|.+|+|++||
T Consensus 28 v~~Ns~gr~~q~~evi~~~~~~~~ql-s~~q~~~f~L~d----anG~-lhlghalnkILkdIinr~~laqg~~alyvpGw 101 (937)
T KOG0433|consen 28 VHFNSTGRIGQVIEVIQPPEILSSQL-SDQQRVEFELKD----ANGN-LHLGHALNKILKDIINRILLAQGKSALYVPGW 101 (937)
T ss_pred cccccccchHHHHHHhCChHHHHHHH-hhccCceEEEec----cCCC-ccchHHHHHHHHHHHHHHHHhcCceeccCCCC
Confidence 44666667778888888888876544 356788999999 9998 99999999999999999999999999999999
Q ss_pred cccChHHH-HHHHHh------CCCc-------hHHHHHHHHHHHHHHHHcCCccccCCcccCCChhHHHHHHHHHHHHHH
Q 002217 142 DAFGLPAE-QYAIET------GTHP-------KITTLRNINRFRTQLKSLGFSYDWNREISTIEPAYYKWTQWIFLQLLK 207 (952)
Q Consensus 142 D~~Glpie-~~a~~~------g~~~-------~~~~~~~~~~~~~~l~~lgi~~Dw~~~~~T~~~~~~~~v~~~f~~L~~ 207 (952)
||||+|+| .+|.+. ..+| +.++.+.++++++.|+|+||..||+++|.|+||+|.....++|.+||+
T Consensus 102 DchGLPiEs~kalssl~~~~~~~s~leiR~~Ar~fA~~AIk~Q~e~F~r~gv~aDW~n~Y~T~~~~ye~aQL~iF~~lye 181 (937)
T KOG0433|consen 102 DCHGLPIESTKALSSLTESEGSRTPLEIRAKARIFADEAIKKQMEAFRRWGVTADWENPYVTKSPSYEAAQLDIFAKLYE 181 (937)
T ss_pred CcCCCchHHHHHhhhhhhccccCCcHHHHHHHHHHHHHHHHHHHHHHHHheeeccCCCceeecChHHHHHHHHHHHHHHh
Confidence 99999999 466441 2233 346778899999999999999999999999999999999999999999
Q ss_pred CCceeeeccccccCCCCCcccCchhhccCccccCCCCeEEeeccccchhhhhhhhHhhccCCCCCCchHHHHHHHhhhcc
Q 002217 208 RGLAYQAEVPVNWCPALGTVLANEEVVDGVSERGGHPVIRKPMRQWMLKITEYADRLLDDLDDLDWPESVKEMQRNWIGR 287 (952)
Q Consensus 208 kGliy~~~~~v~wc~~~~t~ls~~Ev~~~~~~~~~~~~~~~~~~~~~~~i~~y~~~l~~~l~~~~~p~~~~~~~~~~i~~ 287 (952)
||||||..+||||+|..+|+||++|++++.. ..
T Consensus 182 kgLvyR~~KPVyWSpSSRTALAEaELEYn~n-----------------------------------------------H~ 214 (937)
T KOG0433|consen 182 KGLVYRSFKPVYWSPSSRTALAESELEYNDN-----------------------------------------------HQ 214 (937)
T ss_pred ccceeccCCcceecCcchhhhhhhhccCCcC-----------------------------------------------Cc
Confidence 9999999999999999999999999997521 14
Q ss_pred CCCceEEEEEecCCC-------CccCcEEEEecCCcchhccccEEEECCCCccchhhccccc--------hHHHHHHHHH
Q 002217 288 SEGAEMDFRVLDSDG-------QERDIKITVYTTRPDTIFGATYLVVAPEHPLLSSLVSTTQ--------SQNIEEYKNL 352 (952)
Q Consensus 288 s~~~~v~f~~~~~~~-------~~~~~~i~i~TT~P~Tl~g~~~v~v~p~~~y~~~~~~~~~--------~~~~~~y~~~ 352 (952)
|.++|++|++.+.+. ...+.+++||||||||||+|.||++||+..|..+...+.. ...+.++...
T Consensus 215 S~S~Y~~F~L~~~S~~~~~~~~~~~~iyaLVWTTTPWTlPsN~Ai~~n~~~~Yslv~~~~~~~~~~ylvas~L~~~fe~~ 294 (937)
T KOG0433|consen 215 STSAYFRFKLINFSSSAHSEDSKIPQIYALVWTTTPWTLPSNNAISVNSAIQYSLVQFDNNPTSTFYLVASKLLEEFEKS 294 (937)
T ss_pred ceeEEEEEeccCCccccccCCCccCcEEEEEEeCCCccccccceeeeccccceEEEEeccCCcceEEEEccchhhhhhhh
Confidence 788999999976432 1245899999999999999999999999999876554211 1111222211
Q ss_pred HhccchhhHhhhhhcccccccceEEecCCC-CCcccEEecCcccCCCCCCceEecCCCChhhHHHHHHcCCceeeeecCC
Q 002217 353 ASRKSDLERTELQKEKTGVFSGCYARNPAS-GEAIPIWVADYVLGSYGTGAIMAVPAHDTRDHEFALKFDISIHSVVMPD 431 (952)
Q Consensus 353 ~~~~~~~~~~~~~~~~~~~l~g~~~~~P~~-~~~~pv~~~~~V~~~~GTG~V~~~Pah~~~D~~~~~~~~L~i~~vv~~~ 431 (952)
...+. ...+..++..|.|.+|.||+. ....|++.++||+++.|||+||+|||||++||.++.++|||+.+.||..
T Consensus 295 ~~~k~----~i~~t~~g~~L~~~~Y~~pl~~~~~~P~l~g~hVT~~~GTGLVHTAP~HG~eDYlv~l~~~l~~~s~VD~~ 370 (937)
T KOG0433|consen 295 SDRKC----KIVGTVKGANLIGRRYKHPLHNELGLPILEGPHVTDTVGTGLVHTAPAHGFEDYLVAISKGLRVESFVDSR 370 (937)
T ss_pred cCcce----eeeeecchhhccCceecCcCccccCCccccccceecCcccceeecCCCCChHHHHHHhhcCCCcccccCCC
Confidence 11111 112234556789999999974 4579999999999999999999999999999999999999999999987
Q ss_pred CCCCccccc-cccc-----cce-------------------------------EEcccCcccccccCCCCHHHH-HHHHH
Q 002217 432 DESSSQSEK-AYTG-----EGL-------------------------------IVNSSNLISGLDINGLSCQEA-TSKVI 473 (952)
Q Consensus 432 ~~~~~~~~~-~y~~-----~g~-------------------------------l~~~~~~~~~~~~~gl~~~~a-~~~ii 473 (952)
|.++...+ .+.| +|. ++.+. .+||+++.+.+...+ ..+-+
T Consensus 371 -G~yT~ea~~~l~Gk~VL~eG~k~vl~~l~~~iv~~sky~HsYPYDWRTKKPvIiRAs-eQWFi~~e~~k~~A~~al~~V 448 (937)
T KOG0433|consen 371 -GCYTREAGHDLDGKEVLGEGQKIVLRLLNHDIVHVSKYVHSYPYDWRTKKPVIIRAS-EQWFIDVEEIKKRASMALDDV 448 (937)
T ss_pred -CceecccccccccchhhccccHhHHHHHhhhhhhhhcccccCCcccccCCceEEecc-hhheeeHHhhhhHHHHHHhhc
Confidence 55554333 3333 221 11111 157777776543311 11223
Q ss_pred HHHHHcCCCcce-ecccCCceeecccCCCCcccCceEeCCCCceeecCCCCcCCCCCcccccCCCCCCCCCCcccccccc
Q 002217 474 EWAEKTGNGKKK-VNYKLRDWLFARQRYWGEPIPVVFLDGTGETVPLHEAELPLTLPELDDFTPTGTGEPPLSKAVSWVQ 552 (952)
Q Consensus 474 ~~l~~~~~~~~~-~~~~l~DW~ISRQR~WG~PIPv~~~~~~~~~~~~~~~~l~v~lp~~~~~~~~G~~~~~l~~~~~w~~ 552 (952)
++.+..+..+.. ..-...+|||||||.||+|||++|.++.+.+...++.. ... ....+.+|++.++....++|+.
T Consensus 449 k~~P~~~~~rl~~~~~~R~~WCISRQR~WGvPIP~ly~k~~~~~l~ns~~~-~h~---~~~~eqeGsD~Ww~~~~eellp 524 (937)
T KOG0433|consen 449 KVAPGDSDLRLKQLVTTRPSWCISRQRVWGVPIPALYDKNGGSYLSNSLIE-WHA---KLTREQEGSDVWWEIDVEELLP 524 (937)
T ss_pred eeCCcchHHHHHHHHcCCCcceeeeccccCCcceeEEecCCCceeehHHHH-HHH---HHHHHHhCCcceEeCChhHhCc
Confidence 444443332211 12246799999999999999999998776554433211 100 1123456775554444444443
Q ss_pred ccc----cCCCCCccccCCCccccccc--cchhheecCCCCchhHhhhhhhhcCCCceeEecCchhhHHHHHHHHHHHH-
Q 002217 553 TTE----HSSGKPARRETSTMPQWAGS--CWYYLRFMDPKNSKELVDKTKERYWSPVDVYVGGAEHAVLHLLYARFWHK- 625 (952)
Q Consensus 553 ~~~----~~~g~~~~re~d~lD~WfdS--swy~~~~~~p~~~~~~~~~~~~~~w~PvDlyv~G~D~~~~HLly~Rfw~~- 625 (952)
... +.-.+++.|.|||||+|||| ||.... |+. + -.++|+|+||.||. ||||.
T Consensus 525 e~~~~e~~~~a~ey~kgtDimDVWFDSGssWs~v~---~~~------~-----~~~aDv~LEG~DQ~-------rGWFQS 583 (937)
T KOG0433|consen 525 EEEVREIPDIASEYKKGTDIMDVWFDSGSSWSAVL---DNE------R-----EHVADVYLEGVDQF-------RGWFQS 583 (937)
T ss_pred HhhhcccchhHHHhccCCceeeeEecCCCcceeec---CCC------C-----CcceeeEEecchhc-------chHHHH
Confidence 211 23345688999999999988 486543 110 1 14899999999995 99975
Q ss_pred HHHHhcCcCCCCcchhhhhhceeccccceeEEecCCCccccCCCCCcccccccccCccccccccCCceeeccCcchhhcc
Q 002217 626 VLYDIGVVSTKEPFKCVINQGIILGEMQYMVCKDVDGSYISADSTDTLGEYEQESIPEEKVMKSGDFFVMKDNPNIRLIA 705 (952)
Q Consensus 626 ~L~~~~~~~~~~PFk~l~~~G~vl~~~~y~~~~d~~g~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~vl~~~~~~~v~~ 705 (952)
+|++.-+..++.||+.|++|||++|+
T Consensus 584 sLLTsvA~q~kAPYk~vivHGFtlDE------------------------------------------------------ 609 (937)
T KOG0433|consen 584 SLLTSVAVQNKAPYKKVIVHGFTLDE------------------------------------------------------ 609 (937)
T ss_pred HHHHHHHHhccCCchheeeeeeEecC------------------------------------------------------
Confidence 56666667788999999999999876
Q ss_pred cccccccCCCCCCChhhHHhh------hCchhhhhhhhhcCCCCCCCCCChh---hHHHHHHHHHHHHHHHhccCCCCCC
Q 002217 706 RAHKMSKSRGNVVNPDDVVTE------YGADSLRLYEMFMGPFRDSKTWNTS---GIEGVHRFLGRMWRLIVGSSLPDGT 776 (952)
Q Consensus 706 ~g~KMSKSkGNvV~P~eii~~------YGaDalRl~ll~~~~~~~~~~~s~~---~i~~~~r~l~~l~~~~~~~~~~~~~ 776 (952)
+|.|||||+||||+|+.+++. ||||+||||++.+....+. ....+ .+.+..+.+++++||++++. .+
T Consensus 610 ~G~KMSKSlGNVidP~~v~~G~~k~payGaD~LR~WVA~~~~t~d~-~iGp~il~qv~e~l~K~R~T~RfllGnl---~d 685 (937)
T KOG0433|consen 610 NGNKMSKSLGNVVDPTMVTDGSLKQPAYGADGLRFWVAGSENTGES-KIGPKILDQVDEKLIKFRNTFRFLLGNL---QD 685 (937)
T ss_pred CccchhhcccCcCCHHHHhCCcccCCCccccceeeeeecccccCce-ecCHHHHHHHHHHHHHHHhHHHHHhhcc---cc
Confidence 489999999999999999998 9999999999954444433 34444 44556778899999998874 22
Q ss_pred CCCCc--cC--CCCCChHHHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHH-Hhccc--------------c------
Q 002217 777 FKGGT--VV--NDEEPTLEQLCTLHKCIAKVTEEIEGTRFNTGISAMMEFINA-AYKWE--------------K------ 831 (952)
Q Consensus 777 ~~~~~--~~--~~~~~d~~~l~~l~~~i~~v~~~~e~~~f~~ai~~l~~f~~~-~~~~~--------------~------ 831 (952)
+.... .+ ...-.|+..|.+++++++++++.|++|+|++++..+..|++. ++++| .
T Consensus 686 ~~~~~~~~p~~dl~~iDq~~L~ql~~~~~~i~e~Y~~Y~f~kVv~~lq~F~~~~lSa~YfdivKDRLY~~~~~s~~rrs~ 765 (937)
T KOG0433|consen 686 FDGKQVKFPLKDLRYIDQYMLQQLDAIVKRIIELYNDYKFRKVVNDLQQFLQRNLSAFYFDIVKDRLYCDKVGSESRRSA 765 (937)
T ss_pred cCCccccccchhhhhhhHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHhhHHHHHHHhhhhhcCCCCcHHHHHH
Confidence 33221 11 122347888999999999999999999999999999999854 44432 0
Q ss_pred --hhHHHHHHHHHHhCCcchhHHHHHHHHcC-CCCCccccCCCCCCccccC
Q 002217 832 --HPRKIIEPFILLLAPYAPHMSEELWFRLG-HSNSLAYESFPKANPDYLK 879 (952)
Q Consensus 832 --~~~~vL~~l~~LLaPf~P~iaEElw~~L~-~~~sV~~~~WP~~~~~~l~ 879 (952)
.+.++|..+++.++||+||++||+||.|+ ..+-++...||..+..+..
T Consensus 766 QttL~h~l~~l~~~iaPIlP~LaeEvwq~lP~~~~~~f~~k~~~l~s~~~~ 816 (937)
T KOG0433|consen 766 QTTLHHLLHNLAHIISPILPHLAEEVWQHLPGSHEKIFRLKWEDLHSGLLT 816 (937)
T ss_pred HHHHHHHHHHHHHHHccccHHHHHHHHHhCCCCCCcccccCccccchhhcC
Confidence 13478999999999999999999999997 3345899999998766543
No 26
>PRK12300 leuS leucyl-tRNA synthetase; Reviewed
Probab=100.00 E-value=1.7e-106 Score=1003.04 Aligned_cols=620 Identities=27% Similarity=0.441 Sum_probs=472.2
Q ss_pred CCCchhHHHHHHHHHHHHHHHcCCcccccccccccChHHHHHHHHh---------------CC---------CchHHHHH
Q 002217 110 LHVGHPLGYTATDILARLKRMQGYNVLHPMGWDAFGLPAEQYAIET---------------GT---------HPKITTLR 165 (952)
Q Consensus 110 lHiGH~~~~~~~Di~~Ry~r~~G~~V~~~~G~D~~Glpie~~a~~~---------------g~---------~~~~~~~~ 165 (952)
|||||+++++++|+++||+||+||+|+|++||||||+|||.+|++. |+ .|++++.+
T Consensus 1 lHiGH~~~~t~~D~i~Ry~rm~G~~Vl~~~G~d~~GlPie~~ae~~~~~~~~~~~~~~~~~gi~~~~i~~f~~~~~~~~~ 80 (897)
T PRK12300 1 LHVGHGRTYTIGDVIARYKRMRGYNVLFPMAFHVTGTPILGIAERIARGDPETIELYKSLYGIPEEELEKFKDPEYIVEY 80 (897)
T ss_pred CccchhHHHHHHHHHHHHHHcCCCcCCCCCCCCCCCcCHHHHHHHhhccchhHHHHHHHHcCCCHHHHHHhcCHHHHHHH
Confidence 7999999999999999999999999999999999999999987542 33 35678889
Q ss_pred HHHHHHHHHHHcCCccccCCcccCCChhHHHHHHHHHHHHHHCCceeeeccccccCCCCCcccCchhhccCccccCCCCe
Q 002217 166 NINRFRTQLKSLGFSYDWNREISTIEPAYYKWTQWIFLQLLKRGLAYQAEVPVNWCPALGTVLANEEVVDGVSERGGHPV 245 (952)
Q Consensus 166 ~~~~~~~~l~~lgi~~Dw~~~~~T~~~~~~~~v~~~f~~L~~kGliy~~~~~v~wc~~~~t~ls~~Ev~~~~~~~~~~~~ 245 (952)
+.+.++++|++||+++||+|+|.|+||.|+++++|+|.+|+++||||++.++|+|||.|+|+||++|+.++... .
T Consensus 81 ~~~~~~~~~~~lG~~~DW~r~y~T~dp~y~~~v~w~F~~L~ekGliyrg~~~v~wcp~~~t~lad~e~~~~e~~---~-- 155 (897)
T PRK12300 81 FSEEAKEDMKRIGYSIDWRREFTTTDPEYSKFIEWQFRKLKEKGLIVKGSHPVRYCPNDNNPVGDHDLLDGEEP---E-- 155 (897)
T ss_pred hHHHHHHHHHHhCcEEeCCCCeECCChhHHHHHHHHHHHHHHCCCEecCCEeeeeCCCCCCCchHHHHhcCCCC---C--
Confidence 99999999999999999999999999999999999999999999999999999999999999999999864110 0
Q ss_pred EEeeccccchhhhhhhhHhhccCCCCCCchHHHHHHHhhhccCCCceEEEEEecCCCCccCcEEEEecCCcchhccccEE
Q 002217 246 IRKPMRQWMLKITEYADRLLDDLDDLDWPESVKEMQRNWIGRSEGAEMDFRVLDSDGQERDIKITVYTTRPDTIFGATYL 325 (952)
Q Consensus 246 ~~~~~~~~~~~i~~y~~~l~~~l~~~~~p~~~~~~~~~~i~~s~~~~v~f~~~~~~~~~~~~~i~i~TT~P~Tl~g~~~v 325 (952)
.+.+.+|+|+ + + .+.+++||||||||||||+||
T Consensus 156 -----------------------------------------~~~~~~ikf~--~--~--~~~~l~~~TtrPeTl~g~tai 188 (897)
T PRK12300 156 -----------------------------------------IVEYTLIKFE--E--S--EDLILPAATLRPETIFGVTNL 188 (897)
T ss_pred -----------------------------------------cceEEEEEEe--C--C--CceEEEEEECCcchhccceEE
Confidence 1344578997 1 1 247899999999999999999
Q ss_pred EECCCCccchhhccccchHHHHHHH-HHHhccchhhHhhhhhcccccccceEEecCCCCCcccEEecCcccCCCCCCceE
Q 002217 326 VVAPEHPLLSSLVSTTQSQNIEEYK-NLASRKSDLERTELQKEKTGVFSGCYARNPASGEAIPIWVADYVLGSYGTGAIM 404 (952)
Q Consensus 326 ~v~p~~~y~~~~~~~~~~~~~~~y~-~~~~~~~~~~~~~~~~~~~~~l~g~~~~~P~~~~~~pv~~~~~V~~~~GTG~V~ 404 (952)
+|||+++|+.+.+.++.....++.. .......+++ .+.+.+|..|.|.++.||++++.+||++++||++++|||+||
T Consensus 189 ~V~P~~~Y~~~~~~~e~~i~a~~~~~~~~~~~~~~~--~~~~~~G~~l~G~~~~~Pl~~~~ipil~~~~V~~~~GTGvV~ 266 (897)
T PRK12300 189 WVNPDATYVKAEVDGEKWIVSKEAAEKLSFQDRDVE--IIEEIKGSELIGKKVKNPVTGKEVPILPADFVDPDNGTGVVM 266 (897)
T ss_pred EECCCCcEEEEEECCEEEEEeHHHHHHHhcCcCCce--EEEEeehHHhcCCEEECCCCCCeEEEeccCeeecCCCeeeEE
Confidence 9999999987654322110001111 1111111111 233445567999999999999999999999999999999999
Q ss_pred ecCCCChhhHHHHHHcC--------CceeeeecCCC-CCC-------------------c-ccccccc---ccceEEccc
Q 002217 405 AVPAHDTRDHEFALKFD--------ISIHSVVMPDD-ESS-------------------S-QSEKAYT---GEGLIVNSS 452 (952)
Q Consensus 405 ~~Pah~~~D~~~~~~~~--------L~i~~vv~~~~-~~~-------------------~-~~~~~y~---~~g~l~~~~ 452 (952)
+|||||++||+++++++ |+++.++..++ |.+ . .+...|. .+|+|+++.
T Consensus 267 ~~Pah~~~Dy~~~~~~~~~~~~~~~l~~i~ii~v~~~g~~~a~~~~~~~~~~~~~d~~l~~a~~~~y~~~f~~G~~~~~~ 346 (897)
T PRK12300 267 SVPAHAPYDYVALRDLKKNKELLDVIEPIPLIEVEGYGEFPAKEVVEKLGIKSQEDPELEEATKEVYRAEFHKGVLKENT 346 (897)
T ss_pred eCCCCCHHHHHHHHHhccccccccccCCcceEecCCcCcccHHHHHHHhCCCCccchhHHHHHHHhhhccccceEEeecc
Confidence 99999999999999998 77666654321 111 0 0123444 378887653
Q ss_pred CcccccccCCCCHHHHHHHHHHHHHHcCCCccee--------------------------cc------------------
Q 002217 453 NLISGLDINGLSCQEATSKVIEWAEKTGNGKKKV--------------------------NY------------------ 488 (952)
Q Consensus 453 ~~~~~~~~~gl~~~~a~~~ii~~l~~~~~~~~~~--------------------------~~------------------ 488 (952)
..+.|+.+.+|+++|++.|.+.|.+.+.. ++
T Consensus 347 -----g~~~G~~v~eA~~~I~~~L~~~g~~~~~~~~~~~~~~~R~~~~~i~~~~~~QWFi~~~~~~~k~~~~~~~~~~~~ 421 (897)
T PRK12300 347 -----GEYAGKPVREAREKITKDLIEKGIADIMYEFSNRPVYCRCGTECVVKVVKDQWFIDYSDPEWKELAHKALDNMEI 421 (897)
T ss_pred -----cCcCCeEHHHHHHHHHHHHHHCCCeEEEEecCCCCcCcCCCCEEEEEecCCceEEEcCcHHHHHHHHHHHccCEE
Confidence 35899999999999999999988753210 11
Q ss_pred --------------cCCceeecccCCCCcccCc---eEeCCCCceeecCCCCcCCCCCccc-ccCCCCCCCCCCcccccc
Q 002217 489 --------------KLRDWLFARQRYWGEPIPV---VFLDGTGETVPLHEAELPLTLPELD-DFTPTGTGEPPLSKAVSW 550 (952)
Q Consensus 489 --------------~l~DW~ISRQR~WG~PIPv---~~~~~~~~~~~~~~~~l~v~lp~~~-~~~~~G~~~~~l~~~~~w 550 (952)
+++||||||||+||||||+ |.|+.+ +++.+++...... .+...|....-| ..++
T Consensus 422 ~P~~~~~~~~~~l~~l~DW~ISRqr~WGtpiP~~~~w~~esl------~ds~iY~~~~~i~~~l~~~g~~~~~l--~~~~ 493 (897)
T PRK12300 422 IPEEYRKEFENTIDWLKDRACARRRGLGTRLPWDEEWIIESL------SDSTIYMAYYTIAHKIREYGIKPEQL--TPEF 493 (897)
T ss_pred ECHHHHHHHHHHHhhhhhcceeeccccCCcCCccCCEEeeec------cccchhhhHHHHHHHHHHcCCChHHC--Chhh
Confidence 3789999999999999996 555432 3333332211100 001011100001 1111
Q ss_pred ccccccCCCCCccccCCCccccccccchhheecCCCCchhHhhhhhhhcCCCceeEecCchhhHHHHHHHHHHHHHHHHh
Q 002217 551 VQTTEHSSGKPARRETSTMPQWAGSCWYYLRFMDPKNSKELVDKTKERYWSPVDVYVGGAEHAVLHLLYARFWHKVLYDI 630 (952)
Q Consensus 551 ~~~~~~~~g~~~~re~d~lD~WfdSswy~~~~~~p~~~~~~~~~~~~~~w~PvDlyv~G~D~~~~HLly~Rfw~~~L~~~ 630 (952)
.+... ....+++++|++|+|++.... .. ++..++|||+|++++|+||+.+|+.|++|.|.++++
T Consensus 494 ~D~~~-------~~~~~~~~~~~~sg~p~~~~~-------~~-~~~f~~~~P~D~~~~GkDii~~Hl~~~~~~~~a~~~- 557 (897)
T PRK12300 494 FDYVF-------LGKGDPEEVSKKTGIPKEILE-------EM-REEFLYWYPVDWRHSGKDLIPNHLTFFIFNHVAIFP- 557 (897)
T ss_pred CceEE-------eCCCccccCchhcCCCHHHHH-------HH-HHHHhccCCceEEEeeeccCccHHHHHHHHHHHhcC-
Confidence 11111 112246778888876543211 11 223478999999999999999999998888777664
Q ss_pred cCcCCCCcc-hhhhhhceeccccceeEEecCCCccccCCCCCcccccccccCccccccccCCceeeccCcchhhcccccc
Q 002217 631 GVVSTKEPF-KCVINQGIILGEMQYMVCKDVDGSYISADSTDTLGEYEQESIPEEKVMKSGDFFVMKDNPNIRLIARAHK 709 (952)
Q Consensus 631 ~~~~~~~PF-k~l~~~G~vl~~~~y~~~~d~~g~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~vl~~~~~~~v~~~g~K 709 (952)
..|| +++++||||+++ |+|
T Consensus 558 -----~~~~Pk~v~~hG~vl~~-------------------------------------------------------G~K 577 (897)
T PRK12300 558 -----EEKWPRGIVVNGFVLLE-------------------------------------------------------GKK 577 (897)
T ss_pred -----CCccCcEEEEcceEEEC-------------------------------------------------------Ccc
Confidence 3577 899999999742 899
Q ss_pred cccCCCCCCChhhHHhhhCchhhhhhhhhcCCCCCCCCCChhhHHHHHHHHHHHHHHHhccCCCCCCCCCCccCCCCCCh
Q 002217 710 MSKSRGNVVNPDDVVTEYGADSLRLYEMFMGPFRDSKTWNTSGIEGVHRFLGRMWRLIVGSSLPDGTFKGGTVVNDEEPT 789 (952)
Q Consensus 710 MSKSkGNvV~P~eii~~YGaDalRl~ll~~~~~~~~~~~s~~~i~~~~r~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~d 789 (952)
||||+||+|+|.++|++||||++|||++++++..+|.+|+++.+.++.++++|+|+++.... . . ... ......|
T Consensus 578 MSKS~GNvVdp~eii~~yGaDalRl~L~~~~~~~~D~~fs~~~v~~~~~~l~r~~~~~~~~~-~-~--~~~--~~~~~~D 651 (897)
T PRK12300 578 MSKSKGNVIPLRKAIEEYGADVVRLYLTSSAELLQDADWREKEVESVRRQLERFYELAKELI-E-I--GGE--EELRFID 651 (897)
T ss_pred ccCcCCCCCCHHHHHHHcChHHHHHHHHhCCCCCCCCccCHHHHHHHHHHHHHHHHHHHHHh-c-C--CCc--cccCHhH
Confidence 99999999999999999999999999999899999999999999999999999998873321 0 0 000 0123468
Q ss_pred HHHHHHHHHHHHHHHHHHhcCChHHHHHHHHHH-HHHHhcccc---------hhHHHHHHHHHHhCCcchhHHHHHHHHc
Q 002217 790 LEQLCTLHKCIAKVTEEIEGTRFNTGISAMMEF-INAAYKWEK---------HPRKIIEPFILLLAPYAPHMSEELWFRL 859 (952)
Q Consensus 790 ~~~l~~l~~~i~~v~~~~e~~~f~~ai~~l~~f-~~~~~~~~~---------~~~~vL~~l~~LLaPf~P~iaEElw~~L 859 (952)
+|+++++++++++++++|++|+|++|+.+++.+ .+.++ ||. .++++|+.+++||+|||||+|||||+.|
T Consensus 652 ~wils~l~~~i~~v~~~~e~~~~~~A~~~i~~~l~~~~n-~Yi~~~k~~~~~~l~~~l~~~~~lLaPf~P~~aEeiw~~L 730 (897)
T PRK12300 652 KWLLSRLNRIIKETTEAMESFQTRDAVQEAFYELLNDLR-WYLRRVGEANNKVLREVLEIWIRLLAPFTPHLAEELWHKL 730 (897)
T ss_pred HHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHH-HHHHhcchHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHc
Confidence 899999999999999999999999999888654 45554 432 3458999999999999999999999999
Q ss_pred CCCCCccccCCCCCCccccC
Q 002217 860 GHSNSLAYESFPKANPDYLK 879 (952)
Q Consensus 860 ~~~~sV~~~~WP~~~~~~l~ 879 (952)
+.++|||++.||++++..++
T Consensus 731 ~~~~sv~~~~wP~~~~~~~d 750 (897)
T PRK12300 731 GGEGFVSLEKWPEPDESKID 750 (897)
T ss_pred CCCCeEEeCCCCCCCcccCC
Confidence 98889999999998876554
No 27
>KOG0434 consensus Isoleucyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=6.1e-106 Score=892.84 Aligned_cols=746 Identities=22% Similarity=0.373 Sum_probs=559.8
Q ss_pred cccCCChhhhhHHHHHHHHHcCCCCCCCCCCCCCCcEEEEcCCCCCCCCCCCCchhHHHHHHHHHHHHHHHcCCcccccc
Q 002217 60 VKRAYPFHEIEPKWQSYWENNRTFRTPDEIDTSKPKFYVLDMFPYPSGAGLHVGHPLGYTATDILARLKRMQGYNVLHPM 139 (952)
Q Consensus 60 ~~~~y~~~~iE~k~~~~W~~~~~f~~~~~~~~~k~kf~i~~~~Pypng~~lHiGH~~~~~~~Di~~Ry~r~~G~~V~~~~ 139 (952)
++..+||++-|+++.++|.+.+.|+...+..+++|+|.+.||||++.|. +|.||++.-+++|++.||..|.||.|...+
T Consensus 4 ~~~n~nfp~eEEkvle~W~e~~aF~~slk~sk~rp~ftFyDGPPFATGl-PHyGHiLa~TIKDiVtRya~~~G~hVeRRF 82 (1070)
T KOG0434|consen 4 VPENFNFPKEEEKVLEFWREIDAFHTSLKLSKGRPKFTFYDGPPFATGL-PHYGHILASTIKDIVTRYATQTGHHVERRF 82 (1070)
T ss_pred ccccCCCchhHHHHHHHHHHhhHHHHHHHhhCCCCceeeccCCccccCC-CccchhhhhhHHHHHHHHhhccccceeeec
Confidence 4567999999999999999999999877777899999999999999998 999999999999999999999999999999
Q ss_pred cccccChHHHHHHH-HhCCC----------------chHHHHHHHHHHHHHHHHcCCccccCCcccCCChhHHHHHHHHH
Q 002217 140 GWDAFGLPAEQYAI-ETGTH----------------PKITTLRNINRFRTQLKSLGFSYDWNREISTIEPAYYKWTQWIF 202 (952)
Q Consensus 140 G~D~~Glpie~~a~-~~g~~----------------~~~~~~~~~~~~~~~l~~lgi~~Dw~~~~~T~~~~~~~~v~~~f 202 (952)
||||||+|+|.... ++|++ |+.++.++..++++...|||-|+|+++.|.||+|.|++.|+|+|
T Consensus 83 GWD~HGlPVE~eIDKkLgI~g~~dV~kmGI~kYN~ECR~IVmrYssEWe~tv~RlGRWidF~ndYkTmyp~FMESvWwvF 162 (1070)
T KOG0434|consen 83 GWDTHGLPVEYEIDKKLGITGRDDVMKMGIDKYNNECRKIVMRYSSEWEKTVERLGRWIDFDNDYKTLYPSFMESVWWVF 162 (1070)
T ss_pred ccccCCCccceeechhcCCCCHHHHHHHhHHhHhHHHHHHHHHHHHHHHHHHHhhccceeccCCcceecHHHHHHHHHHH
Confidence 99999999997653 34543 56678888999999999999999999999999999999999999
Q ss_pred HHHHHCCceeeeccccccCCCCCcccCchhhccCccccCCCCeEEeeccccchhhhhhhhHhhccCCCCCCchHHHHHHH
Q 002217 203 LQLLKRGLAYQAEVPVNWCPALGTVLANEEVVDGVSERGGHPVIRKPMRQWMLKITEYADRLLDDLDDLDWPESVKEMQR 282 (952)
Q Consensus 203 ~~L~~kGliy~~~~~v~wc~~~~t~ls~~Ev~~~~~~~~~~~~~~~~~~~~~~~i~~y~~~l~~~l~~~~~p~~~~~~~~ 282 (952)
.+|++||++|||.+.++|+..|.|+|||-|-.+++.+..+
T Consensus 163 keL~~kglVYRG~kVMP~STac~TPLSNFEa~QNYKdV~D---------------------------------------- 202 (1070)
T KOG0434|consen 163 KELHEKGLVYRGFKVMPYSTACTTPLSNFEAQQNYKDVPD---------------------------------------- 202 (1070)
T ss_pred HHHHhcCceecceeeeccccccCCcccchhcccCcccCCC----------------------------------------
Confidence 9999999999999999999999999999999877665533
Q ss_pred hhhccCCCceEEEEEecCCCCccCcEEEEecCCcchhccccEEEECCCCccchhhccccchHH---HHHHHHHHhccchh
Q 002217 283 NWIGRSEGAEMDFRVLDSDGQERDIKITVYTTRPDTIFGATYLVVAPEHPLLSSLVSTTQSQN---IEEYKNLASRKSDL 359 (952)
Q Consensus 283 ~~i~~s~~~~v~f~~~~~~~~~~~~~i~i~TT~P~Tl~g~~~v~v~p~~~y~~~~~~~~~~~~---~~~y~~~~~~~~~~ 359 (952)
+++.|.|++.+.. +..+++|||||||||+|.++||||+..|++....+..+.. .++...+......-
T Consensus 203 ------Pav~v~F~li~~~----~~slvAWTTTPWTLPSNlal~Vnp~~~Yvki~dk~~~k~yil~esrl~~l~k~~~~~ 272 (1070)
T KOG0434|consen 203 ------PAVFVAFPLIGDP----NVSLVAWTTTPWTLPSNLALCVNPDFQYVKIKDKTTGKKYILMESRLGELYKNPKND 272 (1070)
T ss_pred ------CeEEEEeeccCCc----ceeEEEEecCCccCccceeEEEcCCeEEEEEEeccCCeEEEEeHHHHHHHhcCcccc
Confidence 4568999997543 5789999999999999999999999999876655433211 11222222221122
Q ss_pred hHhhhhhcccccccceEEecCC-------CCCcccEEecCcccCCCCCCceEecCCCChhhHHHHHHcCCc-----eeee
Q 002217 360 ERTELQKEKTGVFSGCYARNPA-------SGEAIPIWVADYVLGSYGTGAIMAVPAHDTRDHEFALKFDIS-----IHSV 427 (952)
Q Consensus 360 ~~~~~~~~~~~~l~g~~~~~P~-------~~~~~pv~~~~~V~~~~GTG~V~~~Pah~~~D~~~~~~~~L~-----i~~v 427 (952)
.-..+++..|..|.|++|..++ ......|+.++||+.+.|||+||+||++|++||.+|..+|+- ..|+
T Consensus 273 ~~eiler~~G~~L~g~kYeplF~YF~~~~~~~aFrvl~d~yVt~~sGTGiVH~AP~FGe~Dy~~c~~~giI~~d~~~~cp 352 (1070)
T KOG0434|consen 273 NYEILERFQGAALVGLKYEPLFPYFAETFEEGAFRVLSDDYVTEDSGTGIVHQAPAFGEEDYRACVANGIIRKDSLPPCP 352 (1070)
T ss_pred cHHHHHhcccccccCcccCccchHHHHHhccCceEEeccCcEecCCCceeeecCCccChhhHHHHHHcCcccCCCCCCCc
Confidence 2245777888899999998765 245789999999999999999999999999999999998862 4567
Q ss_pred ecCCCCCCccccccccc----------------cceEEcccCccccccc---C-------CC-CHHHHHHHHHHHHHHcC
Q 002217 428 VMPDDESSSQSEKAYTG----------------EGLIVNSSNLISGLDI---N-------GL-SCQEATSKVIEWAEKTG 480 (952)
Q Consensus 428 v~~~~~~~~~~~~~y~~----------------~g~l~~~~~~~~~~~~---~-------gl-~~~~a~~~ii~~l~~~~ 480 (952)
||++ |.++.....|+| .|.++..+.+.+.-.| + .. +.....+.++..+..++
T Consensus 353 VDe~-G~~Tsev~dfaG~YVKDaDK~Ii~~lk~~g~lv~~~~i~HsYPFCWRSDTPLiYraVPsWFVrVk~~v~~ll~nn 431 (1070)
T KOG0434|consen 353 VDES-GLFTSEVTDFAGQYVKDADKLIIRSLKASGRLVKASQITHSYPFCWRSDTPLIYRAVPSWFVRVKNIVDQLLRNN 431 (1070)
T ss_pred cccC-CccccccccccceeeccchHHHHHHHHhcCceeeeeeeeeccCceecCCChHHHhhccHhhhhHHHHHHHHHhcc
Confidence 7765 556555444444 1333222211110000 0 00 01111222222222222
Q ss_pred C----------Ccceecc--cCCceeecccCCCCcccCceEeCCCCceeecCC-CCcCCCCCcccccCCCCCCCCCCccc
Q 002217 481 N----------GKKKVNY--KLRDWLFARQRYWGEPIPVVFLDGTGETVPLHE-AELPLTLPELDDFTPTGTGEPPLSKA 547 (952)
Q Consensus 481 ~----------~~~~~~~--~l~DW~ISRQR~WG~PIPv~~~~~~~~~~~~~~-~~l~v~lp~~~~~~~~G~~~~~l~~~ 547 (952)
. .++..|| +.|||.|||+||||||||+|..++-.++|++.. .+| +.+ .|..-..| +
T Consensus 432 ~~t~WVP~~ikeKRF~NWL~nARDW~iSRnR~WGTPIpLWVSdD~eevVcigSi~eL-------EeL--SG~kItDl--H 500 (1070)
T KOG0434|consen 432 MKTHWVPQNIKEKRFANWLKNARDWNISRNRYWGTPIPLWVSDDYEEVVCIGSIKEL-------EEL--SGVKITDL--H 500 (1070)
T ss_pred cccccCChhhhHHHHHHHHhhhhhcccccccccCCCcceEEccCCceEEEeccHHHH-------HHh--cCCcchhh--h
Confidence 1 1112233 579999999999999999999988667777643 111 111 11110011 1
Q ss_pred ccccc--ccccCCC-CCccccCCCccccccc-cchhheecCCCCchhHhhhhhhhcCCCceeEecCchhhHHHHHHHHHH
Q 002217 548 VSWVQ--TTEHSSG-KPARRETSTMPQWAGS-CWYYLRFMDPKNSKELVDKTKERYWSPVDVYVGGAEHAVLHLLYARFW 623 (952)
Q Consensus 548 ~~w~~--~~~~~~g-~~~~re~d~lD~WfdS-swy~~~~~~p~~~~~~~~~~~~~~w~PvDlyv~G~D~~~~HLly~Rfw 623 (952)
.+.++ +...+|| +.++|.++|+|+||.| |++|++-++|..+.+.|+.. ||+|++-+|.||. |||
T Consensus 501 Re~iD~itIps~~gkg~l~Rv~eVfDCWFESGSMPYAq~HyPFenk~~fe~~-----fPadFIaEGlDQT-------RGW 568 (1070)
T KOG0434|consen 501 RESIDHITIPSKKGKGVLHRVSEVFDCWFESGSMPYAQRHYPFENKEEFEEN-----FPADFIAEGLDQT-------RGW 568 (1070)
T ss_pred hhhcCceecccCCCCcceehhhhHhhhhhccCCCcchhhcCCccchHHHhhc-----CchHhhhhccccc-------cch
Confidence 22222 2233455 4689999999999999 59999999999988887654 7999999999996 999
Q ss_pred HHHHHHhc-CcCCCCcchhhhhhceeccccceeEEecCCCccccCCCCCcccccccccCccccccccCCceeeccCcchh
Q 002217 624 HKVLYDIG-VVSTKEPFKCVINQGIILGEMQYMVCKDVDGSYISADSTDTLGEYEQESIPEEKVMKSGDFFVMKDNPNIR 702 (952)
Q Consensus 624 ~~~L~~~~-~~~~~~PFk~l~~~G~vl~~~~y~~~~d~~g~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~vl~~~~~~~ 702 (952)
++.|.-++ ++.+++||++|++.|+||.+
T Consensus 569 FYTL~VlsT~LF~kppfkNvIvnGlVLAe--------------------------------------------------- 597 (1070)
T KOG0434|consen 569 FYTLLVLSTALFGKPPFKNVIVNGLVLAE--------------------------------------------------- 597 (1070)
T ss_pred hhHHHHHHHHHcCCCcchheeEeeeEEec---------------------------------------------------
Confidence 99887765 57889999999999999976
Q ss_pred hcccccccccCCCCCCChhhHHhhhCchhhhhhhhhcCCC-CCCCCCChhhHHHHHHHH----HHHHHHHhccCC-----
Q 002217 703 LIARAHKMSKSRGNVVNPDDVVTEYGADSLRLYEMFMGPF-RDSKTWNTSGIEGVHRFL----GRMWRLIVGSSL----- 772 (952)
Q Consensus 703 v~~~g~KMSKSkGNvV~P~eii~~YGaDalRl~ll~~~~~-~~~~~~s~~~i~~~~r~l----~~l~~~~~~~~~----- 772 (952)
+|+|||||+.|+.+|..+|++||||+|||||..+.-. ...+.|.++++.++.+.+ -|.++|++++..
T Consensus 598 ---DG~KMSKrlkNYPdP~~iinkYGADalRlYLInSPVvraE~LkFkeeGVrevvk~v~lPW~NsyrF~~qn~~~~~~~ 674 (1070)
T KOG0434|consen 598 ---DGKKMSKRLKNYPDPSLIINKYGADALRLYLINSPVVRAENLKFKEEGVREVVKDVLLPWYNSYRFLVQNAALLKKE 674 (1070)
T ss_pred ---ccHHHhhhhhcCCCHHHHHHhhcchheeeeeecCccccccccccchhhHHHHHHhhhhhhhHHHHHHHHHHHHhccc
Confidence 3899999999999999999999999999999965444 466789999998876522 134455543321
Q ss_pred CCCCCCC-CccCCCCCChHHHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHhcccch-------------------
Q 002217 773 PDGTFKG-GTVVNDEEPTLEQLCTLHKCIAKVTEEIEGTRFNTGISAMMEFINAAYKWEKH------------------- 832 (952)
Q Consensus 773 ~~~~~~~-~~~~~~~~~d~~~l~~l~~~i~~v~~~~e~~~f~~ai~~l~~f~~~~~~~~~~------------------- 832 (952)
....|.. .......-.|+|+++.++.++.-+++.|+.|++.+++..+..|+..+.+||.+
T Consensus 675 ~g~~f~~~~~~~S~NvmDrWI~a~~qslv~fv~~eM~~YrLytVvp~llkfiD~LTNwYiR~nRrrlkGe~G~~d~~~AL 754 (1070)
T KOG0434|consen 675 TGKDFVFDDSVTSSNVMDRWILASTQSLVGFVREEMDQYRLYTVVPRLLKFIDELTNWYIRFNRRRLKGENGEHDCHNAL 754 (1070)
T ss_pred cCCccccccccccchhHHHHHHHHHHHHHHHHHHHHHheehhhhHHHHHHHHHHhhhhheehhhhhhcCCCchHHHHHHH
Confidence 1112221 11223344699999999999999999999999999999999999999999742
Q ss_pred --hHHHHHHHHHHhCCcchhHHHHHHHHcCC----------CCCccccCCCCCCccccCCCceEE-------eEEEecee
Q 002217 833 --PRKIIEPFILLLAPYAPHMSEELWFRLGH----------SNSLAYESFPKANPDYLKDSTIVL-------PIQINGKT 893 (952)
Q Consensus 833 --~~~vL~~l~~LLaPf~P~iaEElw~~L~~----------~~sV~~~~WP~~~~~~l~~~~i~l-------~vqVngk~ 893 (952)
+.++|..++++|+||+||+||.+||.|.. ..|||...+|.+.+.++++. ++. .|..-..+
T Consensus 755 ~~Lf~vL~t~~r~MaPfTPF~tE~iyq~Lk~~~~~~~~~~~~~SVHfl~~P~~~~~~~de~-ve~~v~~m~siIdl~R~i 833 (1070)
T KOG0434|consen 755 NVLFEVLFTLVRVMAPFTPFFTEYIYQNLKKYIPIDKNEKSERSVHFLSYPTPKEELIDET-VERRVERMQSIIDLARNI 833 (1070)
T ss_pred HHHHHHHHHHHHHHcCCchHHHHHHHHHHHhcCCccccCCccceeEEeecCCchhhhccch-HHHHHHHHHHHHHHHHHH
Confidence 23688999999999999999999999842 36899999999998887652 221 23334455
Q ss_pred EEEEEecCCCCHHHHHHHHcc-----C-HHHHhh-hCCCCeEEEEEeCC
Q 002217 894 RGTIQVEEGCSEEEAFKLASL-----D-EKLSKF-LDGKSIKKRIYVPG 935 (952)
Q Consensus 894 r~~i~v~~~~s~e~~~~~~~~-----~-~~~~~~-l~gk~i~kvi~vp~ 935 (952)
|.+-+++...++.+++.+... + ..+.++ ++..+++++.+.-.
T Consensus 834 Rern~islKtPLK~~ivi~~d~~~ledik~l~~yI~eElNVr~v~~~~d 882 (1070)
T KOG0434|consen 834 RERNTISLKTPLKELIVIHSDEEYLEDIKSLERYILEELNVREVVFTSD 882 (1070)
T ss_pred hhccCCcccCchhheEEEcCCHHHHHHHHHHHHHHHHhhcceeeeeccc
Confidence 655556666665555433221 1 112333 36778888887765
No 28
>KOG0432 consensus Valyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=5.1e-104 Score=906.05 Aligned_cols=636 Identities=28% Similarity=0.479 Sum_probs=505.3
Q ss_pred cccccCCChhhhhHHHHHHHHHcCCCCCCCCCCCCCCcEEEEcCCCCCCCCCCCCchhHHHHHHHHHHHHHHHcCCcccc
Q 002217 58 QVVKRAYPFHEIEPKWQSYWENNRTFRTPDEIDTSKPKFYVLDMFPYPSGAGLHVGHPLGYTATDILARLKRMQGYNVLH 137 (952)
Q Consensus 58 ~~~~~~y~~~~iE~k~~~~W~~~~~f~~~~~~~~~k~kf~i~~~~Pypng~~lHiGH~~~~~~~Di~~Ry~r~~G~~V~~ 137 (952)
..+...|++..+|..|..+|++.+.|++... ....+.|.++-+||...|. ||||||++.++.|.++||.||.||.|+|
T Consensus 40 ~~~~~~y~p~~vE~~wy~ww~k~g~fkp~~~-~~~~~~f~i~~PPPNVTG~-LHiGHALt~aiqD~i~R~~rm~G~~vlw 117 (995)
T KOG0432|consen 40 GPLPAAYSPAYVESAWYKWWEKQGFFKPEYG-PNPGGVFVIPLPPPNVTGS-LHIGHALTVAIQDALARYNRMHGYQVLW 117 (995)
T ss_pred CcccccCCccchHHHHHHHHHHcCCCCcccC-CCCCCcceeecCCCCcccc-cchhHHHHHHHHHHHHHHHHhcCCeeee
Confidence 3677889999999999999999999987643 2357789998888888887 9999999999999999999999999999
Q ss_pred cccccccChHHHHHHHH-----hCCC------------chHHHHHHHHHHHHHHHHcCCccccCCcccCCChhHHHHHHH
Q 002217 138 PMGWDAFGLPAEQYAIE-----TGTH------------PKITTLRNINRFRTQLKSLGFSYDWNREISTIEPAYYKWTQW 200 (952)
Q Consensus 138 ~~G~D~~Glpie~~a~~-----~g~~------------~~~~~~~~~~~~~~~l~~lgi~~Dw~~~~~T~~~~~~~~v~~ 200 (952)
++|+||+|+.+..-++| .|.. ..+|-+++-.++.+||++||.++||+|.++||||...++|.+
T Consensus 118 ~PG~DHAGIATQ~VVEK~l~~~~~~~Rh~lgRe~F~~~vw~Wk~e~g~~I~~Qlk~lGas~DW~re~fTmD~~~s~AV~e 197 (995)
T KOG0432|consen 118 VPGTDHAGIATQVVVEKQLAREGGKTRHDLGREEFLKEVWEWKEEYGGRIYNQLKRLGASLDWDREAFTMDPKLSRAVTE 197 (995)
T ss_pred cCCccccchhHHHHHHHHHHHhcCcchhhcCHHHHHHHHHHHHHHhCccHHHHHHHhcCcccccHhhcccCHHHHHHHHH
Confidence 99999999988655443 2232 235677888899999999999999999999999999999999
Q ss_pred HHHHHHHCCceeeeccccccCCCCCcccCchhhccCccccCCCCeEEeeccccchhhhhhhhHhhccCCCCCCchHHHHH
Q 002217 201 IFLQLLKRGLAYQAEVPVNWCPALGTVLANEEVVDGVSERGGHPVIRKPMRQWMLKITEYADRLLDDLDDLDWPESVKEM 280 (952)
Q Consensus 201 ~f~~L~~kGliy~~~~~v~wc~~~~t~ls~~Ev~~~~~~~~~~~~~~~~~~~~~~~i~~y~~~l~~~l~~~~~p~~~~~~ 280 (952)
.|.+|+++|+|||+.+.||||+...|++|+.||++ .++.+.... .++.|.....-+
T Consensus 198 AFvrL~eeglIyR~~rlVNW~~~L~saiSdiEVe~--~ei~~~t~l---------~vpGyd~~VeFG------------- 253 (995)
T KOG0432|consen 198 AFVRLHEEGLIYRANRLVNWCPALRSAISDIEVES--VEIPGRTLL---------SVPGYDTKVEFG------------- 253 (995)
T ss_pred HHHHHHhcCceEecCceeeechhHHhhhhhheecc--eecCCCceE---------ecCCCCcceeee-------------
Confidence 99999999999999999999999999999999984 222222221 222222211100
Q ss_pred HHhhhccCCCceEEEEEecCCCCccCcEEEEecCCcchhccccEEEECCCCccchhhccccchHHHHHHHHHHhccchhh
Q 002217 281 QRNWIGRSEGAEMDFRVLDSDGQERDIKITVYTTRPDTIFGATYLVVAPEHPLLSSLVSTTQSQNIEEYKNLASRKSDLE 360 (952)
Q Consensus 281 ~~~~i~~s~~~~v~f~~~~~~~~~~~~~i~i~TT~P~Tl~g~~~v~v~p~~~y~~~~~~~~~~~~~~~y~~~~~~~~~~~ 360 (952)
.-..++|++.++ +..|+|+|||||||+|++||||||+++. |++
T Consensus 254 --------~L~~faY~v~gs-----~~~i~VaTTRpET~lGDvAvAVhP~D~R---------------Yk~--------- 296 (995)
T KOG0432|consen 254 --------VLYSFAYPVEGS-----DEEIVVATTRPETILGDVAVAVHPDDDR---------------YKH--------- 296 (995)
T ss_pred --------eeeEEEEeccCC-----CCeEEEecCCccccccceeEEeCCCCcc---------------ccc---------
Confidence 001366777543 3589999999999999999999999964 321
Q ss_pred HhhhhhcccccccceEEecCCCCCcccEEecCcccCCCCCCceEecCCCChhhHHHHHHcCCceeeeecCCCCCCccccc
Q 002217 361 RTELQKEKTGVFSGCYARNPASGEAIPIWVADYVLGSYGTGAIMAVPAHDTRDHEFALKFDISIHSVVMPDDESSSQSEK 440 (952)
Q Consensus 361 ~~~~~~~~~~~l~g~~~~~P~~~~~~pv~~~~~V~~~~GTG~V~~~Pah~~~D~~~~~~~~L~i~~vv~~~~~~~~~~~~ 440 (952)
+.|.++.||++|+.+|||.+.+|++++|||+|.++||||+.||++|++|||+.+++++++
T Consensus 297 -----------lhGk~~~hP~~~r~lPiI~D~~Vd~~fGTGaVKITPaHd~nDyEvgkRh~L~~~ni~~~d--------- 356 (995)
T KOG0432|consen 297 -----------LHGKFVKHPFTGRKLPIICDIAVDMEFGTGAVKITPAHDPNDYEVGKRHNLEFINIFTDD--------- 356 (995)
T ss_pred -----------ccCceeecCCCCCccceeecccccccccccceEecCCCChhHHHHHHhcCCCceeEEcCC---------
Confidence 468899999999999999999999999999999999999999999999999999999876
Q ss_pred cccccceEEcccCcccccccCCCCHHHHHHHHHHHHHHcCCCccee----------------------------------
Q 002217 441 AYTGEGLIVNSSNLISGLDINGLSCQEATSKVIEWAEKTGNGKKKV---------------------------------- 486 (952)
Q Consensus 441 ~y~~~g~l~~~~~~~~~~~~~gl~~~~a~~~ii~~l~~~~~~~~~~---------------------------------- 486 (952)
|.|++.. .++.||...+|+++|++.|++.|+.+...
T Consensus 357 -----G~l~~~~-----gef~Gm~RFeAR~kvv~~L~e~gL~~g~~~h~mvlpiCSRsgDVIEpllkpQW~v~c~ema~~ 426 (995)
T KOG0432|consen 357 -----GLLNNVC-----GEFKGMKRFEAREKVVEKLKELGLYVGKENHPMVLPICSRSGDVIEPLLKPQWFVSCKEMAKK 426 (995)
T ss_pred -----Cceeccc-----hhccCcHHHHHHHHHHHHHHHhhhhhccCCCceeccccCCCCCcccccccchheeehHHHHHH
Confidence 4555432 37999999999999999999998743210
Q ss_pred -------------------cc-----cCCceeecccCCCCcccCceEeCCCC-------ceeecCCCCcCCCCCcccccC
Q 002217 487 -------------------NY-----KLRDWLFARQRYWGEPIPVVFLDGTG-------ETVPLHEAELPLTLPELDDFT 535 (952)
Q Consensus 487 -------------------~~-----~l~DW~ISRQR~WG~PIPv~~~~~~~-------~~~~~~~~~l~v~lp~~~~~~ 535 (952)
+| +.+|||||||.|||+.||+|+-.... -++.-++++
T Consensus 427 A~~av~sG~L~i~P~~~~k~w~~W~~~i~DWCiSRQLWWGHrIPAy~v~~~~~~~ee~~Wvvarseee------------ 494 (995)
T KOG0432|consen 427 ALKAVESGKLEILPEFHEKEWYRWLENIRDWCISRQLWWGHRIPAYFVNLSDGRAEEDYWVVARSEEE------------ 494 (995)
T ss_pred HHHHHhcCCeEECchHHHHHHHHHHhhccccchhhhhhhccccceeeeecccCCCccceeEEeCCHHH------------
Confidence 01 46899999999999999998873211 011111100
Q ss_pred CCCCCCCCCccccccccccc-cCCCCCccccCCCcccccccc-chhheecCCCCchhHhhhhhhhcCCCceeEecCchhh
Q 002217 536 PTGTGEPPLSKAVSWVQTTE-HSSGKPARRETSTMPQWAGSC-WYYLRFMDPKNSKELVDKTKERYWSPVDVYVGGAEHA 613 (952)
Q Consensus 536 ~~G~~~~~l~~~~~w~~~~~-~~~g~~~~re~d~lD~WfdSs-wy~~~~~~p~~~~~~~~~~~~~~w~PvDlyv~G~D~~ 613 (952)
.+..+ -..+ |...-.++|++|||||||+|+ |+|..++||+.++++ ..+||.++.=+|.|+.
T Consensus 495 -------A~eka----a~k~g~~~~~~L~qDpDVLDTWFSS~L~PfS~lGWP~~t~d~------~~fyP~sllETG~DIL 557 (995)
T KOG0432|consen 495 -------AREKA----AEKFGPGKEFTLEQDPDVLDTWFSSGLWPFSTLGWPEETKDF------KNFYPLSLLETGHDIL 557 (995)
T ss_pred -------HHHHH----HHHhCCcccceeecCccHHHhhhhcccccchhcCCccccccH------HhcCCchhhhcCchHH
Confidence 00000 0011 111235799999999999998 999999999977654 4468999999999996
Q ss_pred HHHHHHHHHHHHHHHHhcC-cCCCCcchhhhhhceeccccceeEEecCCCccccCCCCCcccccccccCccccccccCCc
Q 002217 614 VLHLLYARFWHKVLYDIGV-VSTKEPFKCVINQGIILGEMQYMVCKDVDGSYISADSTDTLGEYEQESIPEEKVMKSGDF 692 (952)
Q Consensus 614 ~~HLly~Rfw~~~L~~~~~-~~~~~PFk~l~~~G~vl~~~~y~~~~d~~g~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~ 692 (952)
.||...|..+|+ +.++.||++|+.||||-|.
T Consensus 558 -------fFWVaRMvmLg~kLtG~lPF~~V~LH~mVRDa----------------------------------------- 589 (995)
T KOG0432|consen 558 -------FFWVARMVMLGLKLTGELPFKEVLLHGLVRDA----------------------------------------- 589 (995)
T ss_pred -------HHHHHHHHHhhhhhcCCCCchheeechhhccc-----------------------------------------
Confidence 899999988886 5679999999999999643
Q ss_pred eeeccCcchhhcccccccccCCCCCCChhhHHh------------------------------hh-------Cchhhhhh
Q 002217 693 FVMKDNPNIRLIARAHKMSKSRGNVVNPDDVVT------------------------------EY-------GADSLRLY 735 (952)
Q Consensus 693 ~vl~~~~~~~v~~~g~KMSKSkGNvV~P~eii~------------------------------~Y-------GaDalRl~ 735 (952)
.|+|||||+||||||.|+|+ .| |.||||+.
T Consensus 590 -------------~GRKMSKSLGNVIDPlDVI~Gisle~L~~~L~~gNLdp~Ev~~a~~gq~kdFPnGIpeCGtDALRFa 656 (995)
T KOG0432|consen 590 -------------HGRKMSKSLGNVIDPLDVIDGISLEKLHAKLLSGNLDPREVEKAKKGQKKDFPNGIPECGTDALRFA 656 (995)
T ss_pred -------------cccccchhhccccCHHHHhccccHHHHHHHHHcCCCCHHHHHHHHHHHHhhcCCCCcccchHHHHHH
Confidence 37999999999999999997 45 99999999
Q ss_pred hhhcCCCCCCCCCChhhHHHHHHHHHHHHHH---HhccCCCCCCCCCCc--cC-CCC-CChHHHHHHHHHHHHHHHHHHh
Q 002217 736 EMFMGPFRDSKTWNTSGIEGVHRFLGRMWRL---IVGSSLPDGTFKGGT--VV-NDE-EPTLEQLCTLHKCIAKVTEEIE 808 (952)
Q Consensus 736 ll~~~~~~~~~~~s~~~i~~~~r~l~~l~~~---~~~~~~~~~~~~~~~--~~-~~~-~~d~~~l~~l~~~i~~v~~~~e 808 (952)
|++-+....|++.+...+.++++|++++||. +++. + ..+|.+.. .. ... ..|.|++++|+.+++.+.+.|+
T Consensus 657 L~s~~~~~~dInLDv~rv~g~r~FcNKlWNa~rF~l~~-l-g~~~~p~~~~~~~~~~~~~d~WIlsrL~~av~~~~~~~~ 734 (995)
T KOG0432|consen 657 LCSYTTQGRDINLDVLRVEGYRHFCNKLWNATRFALQR-L-GENFVPSPTEDLSGNESLVDEWILSRLAEAVEEVNESLE 734 (995)
T ss_pred HHHccccCccccccHHHHhhHHHHHHHHHHHHHHHHHh-c-ccCCCCCcccccCCCcchhHHHHHHHHHHHHHHHHhhhh
Confidence 9988888899999999999999999999974 4433 1 11222211 11 111 2689999999999999999999
Q ss_pred cCChHHHHHHHHHHH-HHHhc----------cc----------chhHHHHHHHHHHhCCcchhHHHHHHHHcCCC-----
Q 002217 809 GTRFNTGISAMMEFI-NAAYK----------WE----------KHPRKIIEPFILLLAPYAPHMSEELWFRLGHS----- 862 (952)
Q Consensus 809 ~~~f~~ai~~l~~f~-~~~~~----------~~----------~~~~~vL~~l~~LLaPf~P~iaEElw~~L~~~----- 862 (952)
.|+|..|.+++..|. .+++. |. ..+..+|...++||+|||||+||||||+|+..
T Consensus 735 ~~~f~~at~a~~~Fwl~~lCDVYlE~~Kp~l~~~~~~~~~~a~~vL~~~ld~gLrll~PfMPFvtEel~qrlP~r~~~~~ 814 (995)
T KOG0432|consen 735 ARNFHLATSALYAFWLYDLCDVYLEATKPLLWGDSEALAYEARRVLYRCLDNGLRLLHPFMPFITEELWQRLPRRKGSKP 814 (995)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHhhHHhcCCcHHHHHHHHHHHHHHHHHHHHHhcCcccccHHHHHHhcccCCCCCC
Confidence 999999999999987 44433 11 12446889999999999999999999999532
Q ss_pred CCccccCCCCCCcccc
Q 002217 863 NSLAYESFPKANPDYL 878 (952)
Q Consensus 863 ~sV~~~~WP~~~~~~l 878 (952)
.|+..++||...+.+-
T Consensus 815 ~si~va~yP~~~~~~~ 830 (995)
T KOG0432|consen 815 ASISVSPYPSSNELWR 830 (995)
T ss_pred CceEecCCCchhcccC
Confidence 3799999995544443
No 29
>cd00817 ValRS_core catalytic core domain of valyl-tRNA synthetases. Valine amino-acyl tRNA synthetase (ValRS) catalytic core domain. This enzyme is a monomer which aminoacylates the 2'-OH of the nucleotide at the 3' of the appropriate tRNA. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. It contains the characteristic class I HIGH and KMSKS motifs, which are involved in ATP binding. ValRS has an insertion in the core domain, which is subject to both deletions and rearrangements. This editing region hydrolyzes mischarged cognate tRNAs and thus prevents the incorporation of chemically similar amino acids.
Probab=100.00 E-value=5.2e-76 Score=670.00 Aligned_cols=361 Identities=31% Similarity=0.551 Sum_probs=300.0
Q ss_pred CcEEEEcCCCCCCCCCCCCchhHHHHHHHHHHHHHHHcCCcccccccccccChHHHHHHHHh---------CCC------
Q 002217 94 PKFYVLDMFPYPSGAGLHVGHPLGYTATDILARLKRMQGYNVLHPMGWDAFGLPAEQYAIET---------GTH------ 158 (952)
Q Consensus 94 ~kf~i~~~~Pypng~~lHiGH~~~~~~~Di~~Ry~r~~G~~V~~~~G~D~~Glpie~~a~~~---------g~~------ 158 (952)
|+|+|+++|||+||. |||||+++++++|+++||+||+|++|+|++|||+||+|||..|++. ++.
T Consensus 1 ~~f~i~~~pPy~nG~-lHiGH~~~~~~~Dv~~Ry~r~~G~~V~~~~G~D~hG~pie~~a~k~~~~~~~~~~~~~~~~~~~ 79 (382)
T cd00817 1 PVFVIDTPPPNVTGS-LHMGHALNNTIQDIIARYKRMKGYNVLWPPGTDHAGIATQVVVEKKLGIEGKTRHDLGREEFLE 79 (382)
T ss_pred CcEEEecCCCCCCCc-chHHHHHHHHHHHHHHHHHHhcCCcccccCccCCCCChHHHHHHHHhcccccchhcCCHHHHHH
Confidence 589999999999998 9999999999999999999999999999999999999999998764 233
Q ss_pred -chHHHHHHHHHHHHHHHHcCCccccCCcccCCChhHHHHHHHHHHHHHHCCceeeeccccccCCCCCcccCchhhccCc
Q 002217 159 -PKITTLRNINRFRTQLKSLGFSYDWNREISTIEPAYYKWTQWIFLQLLKRGLAYQAEVPVNWCPALGTVLANEEVVDGV 237 (952)
Q Consensus 159 -~~~~~~~~~~~~~~~l~~lgi~~Dw~~~~~T~~~~~~~~v~~~f~~L~~kGliy~~~~~v~wc~~~~t~ls~~Ev~~~~ 237 (952)
|+++++++++.|++++++||+++||++++.|++|.|.+.|+++|.+|+++|+||++.++|+|||.|+|+||+.||
T Consensus 80 ~~~~~~~~~~~~~~~~~~~lgi~~Dw~~~~~T~~~~~~~~v~~~f~~L~~~G~iy~~~~~~~yc~~~~t~l~~~ev---- 155 (382)
T cd00817 80 KCWEWKEESGGKIREQLKRLGASVDWSREYFTMDPGLSRAVQEAFVRLYEKGLIYRDNRLVNWCPKLRTAISDIEV---- 155 (382)
T ss_pred HHHHHHHHHHHHHHHHHHHhCceeecCCCcCCCCHHHHHHHHHHHHHHHHCCCEEeeeeEEeecCCcCCCCCcchh----
Confidence 346899999999999999999999999999999999999999999999999999999999999999999999998
Q ss_pred cccCCCCeEEeeccccchhhhhhhhHhhccCCC--CC-CchHHHHHHHhhhccCCCceEEEEEecCCCCccCcEEEEecC
Q 002217 238 SERGGHPVIRKPMRQWMLKITEYADRLLDDLDD--LD-WPESVKEMQRNWIGRSEGAEMDFRVLDSDGQERDIKITVYTT 314 (952)
Q Consensus 238 ~~~~~~~~~~~~~~~~~~~i~~y~~~l~~~l~~--~~-~p~~~~~~~~~~i~~s~~~~v~f~~~~~~~~~~~~~i~i~TT 314 (952)
|++||.+++.+.++||||++++|+++|++.+++ .. ||++.++
T Consensus 156 c~~cg~~~~~~~~~qwf~~l~~~~~~l~~~~~~~~~~~~P~~~~~----------------------------------- 200 (382)
T cd00817 156 CSRSGDVIEPLLKPQWFVKVKDLAKKALEAVKEGDIKFVPERMEK----------------------------------- 200 (382)
T ss_pred cccCCCeEEEEecCeeEEehHHHHHHHHHHHhcCCcEEEChHHHH-----------------------------------
Confidence 889999999999999999999999998876543 11 2322222
Q ss_pred CcchhccccEEEECCCCccchhhccccchHHHHHHHHHHhccchhhHhhhhhcccccccceEEecCCCCCcccEEecCcc
Q 002217 315 RPDTIFGATYLVVAPEHPLLSSLVSTTQSQNIEEYKNLASRKSDLERTELQKEKTGVFSGCYARNPASGEAIPIWVADYV 394 (952)
Q Consensus 315 ~P~Tl~g~~~v~v~p~~~y~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~P~~~~~~pv~~~~~V 394 (952)
T Consensus 201 -------------------------------------------------------------------------------- 200 (382)
T cd00817 201 -------------------------------------------------------------------------------- 200 (382)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred cCCCCCCceEecCCCChhhHHHHHHcCCceeeeecCCCCCCccccccccccceEEcccCcccccccCCCCHHHHHHHHHH
Q 002217 395 LGSYGTGAIMAVPAHDTRDHEFALKFDISIHSVVMPDDESSSQSEKAYTGEGLIVNSSNLISGLDINGLSCQEATSKVIE 474 (952)
Q Consensus 395 ~~~~GTG~V~~~Pah~~~D~~~~~~~~L~i~~vv~~~~~~~~~~~~~y~~~g~l~~~~~~~~~~~~~gl~~~~a~~~ii~ 474 (952)
.+..
T Consensus 201 ----------------------------------------------------------------------------~~~~ 204 (382)
T cd00817 201 ----------------------------------------------------------------------------RYEN 204 (382)
T ss_pred ----------------------------------------------------------------------------HHHH
Confidence 2233
Q ss_pred HHHHcCCCcceecccCCceeecccCCCCcccCceEeCCCCceeecCCCCcCCCCCcccccCCCCCCCCCCcccccccccc
Q 002217 475 WAEKTGNGKKKVNYKLRDWLFARQRYWGEPIPVVFLDGTGETVPLHEAELPLTLPELDDFTPTGTGEPPLSKAVSWVQTT 554 (952)
Q Consensus 475 ~l~~~~~~~~~~~~~l~DW~ISRQR~WG~PIPv~~~~~~~~~~~~~~~~l~v~lp~~~~~~~~G~~~~~l~~~~~w~~~~ 554 (952)
||+ +++||||||||+||+|||+|+|++|+..+..++++++.... . ....
T Consensus 205 ~l~-----------~l~Dw~ISR~~~WGipvP~~~~~~~~~~~~~~~~~~~~~~~------------------~--~~~~ 253 (382)
T cd00817 205 WLE-----------NIRDWCISRQLWWGHRIPAWYCKDGGHWVVAREEDEAIDKA------------------A--PEAC 253 (382)
T ss_pred HHh-----------hCccceeeeccccCCccceEEeCCCCcEEecchhHHHHHHh------------------c--cccc
Confidence 332 17899999999999999999999888766544443322100 0 1122
Q ss_pred ccCCCCCccccCCCcccccccc-chhheecCCCCchhHhhhhhhhcCCCceeEecCchhhHHHHHHHHHHHHHHHHhc-C
Q 002217 555 EHSSGKPARRETSTMPQWAGSC-WYYLRFMDPKNSKELVDKTKERYWSPVDVYVGGAEHAVLHLLYARFWHKVLYDIG-V 632 (952)
Q Consensus 555 ~~~~g~~~~re~d~lD~WfdSs-wy~~~~~~p~~~~~~~~~~~~~~w~PvDlyv~G~D~~~~HLly~Rfw~~~L~~~~-~ 632 (952)
|++++..++|++|||||||||+ +|+....+|.+.++ .++|+|+|++++|+||+ |||+..+.... .
T Consensus 254 ~~~~~~~~~~~~~v~dvWfds~~~~~~~~~~~~~~~~------~~~~~p~d~~~~G~D~~-------~~h~~~~l~~~~~ 320 (382)
T cd00817 254 VPCGGEELKQDEDVLDTWFSSSLWPFSTLGWPEETKD------LKKFYPTSLLVTGHDII-------FFWVARMIMRGLK 320 (382)
T ss_pred cCCCccCeeECCceeeeeecCCCcHHHHhCCCCcchh------HhhcCCCCeeeeecCcC-------chHHHHHHHHHHH
Confidence 3434567999999999999997 67776677755321 25678999999999997 77765544333 3
Q ss_pred cCCCCcchhhhhhceeccccceeEEecCCCccccCCCCCcccccccccCccccccccCCceeeccCcchhhccccccccc
Q 002217 633 VSTKEPFKCVINQGIILGEMQYMVCKDVDGSYISADSTDTLGEYEQESIPEEKVMKSGDFFVMKDNPNIRLIARAHKMSK 712 (952)
Q Consensus 633 ~~~~~PFk~l~~~G~vl~~~~y~~~~d~~g~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~vl~~~~~~~v~~~g~KMSK 712 (952)
+.+..||+++++||||++. +|+||||
T Consensus 321 ~~g~~p~~~v~~hg~v~~~------------------------------------------------------~g~KMSK 346 (382)
T cd00817 321 LTGKLPFKEVYLHGLVRDE------------------------------------------------------DGRKMSK 346 (382)
T ss_pred hhCCCchHHeEeeeeEECC------------------------------------------------------CCCCccc
Confidence 4456899999999999753 3799999
Q ss_pred CCCCCCChhhHHhhhCchhhhhhhhhcCCCCCCCCC
Q 002217 713 SRGNVVNPDDVVTEYGADSLRLYEMFMGPFRDSKTW 748 (952)
Q Consensus 713 SkGNvV~P~eii~~YGaDalRl~ll~~~~~~~~~~~ 748 (952)
|+||+|+|.+++++||+|++|||+++.++..+|.+|
T Consensus 347 S~Gn~v~~~dll~~~g~Da~R~~ll~~~~~~~D~~f 382 (382)
T cd00817 347 SLGNVIDPLDVIDGYGADALRFTLASAATQGRDINL 382 (382)
T ss_pred cCCCCCCHHHHHHhcCcHHHHHHHHhCCCccCCCCC
Confidence 999999999999999999999999988888887654
No 30
>PRK12267 methionyl-tRNA synthetase; Reviewed
Probab=100.00 E-value=9.3e-73 Score=685.38 Aligned_cols=443 Identities=27% Similarity=0.454 Sum_probs=359.4
Q ss_pred CCcEEEEcCCCCCCCCCCCCchhHHHHHHHHHHHHHHHcCCcccccccccccChHHHHHHHHhCCCchHHHHHHHHHHHH
Q 002217 93 KPKFYVLDMFPYPSGAGLHVGHPLGYTATDILARLKRMQGYNVLHPMGWDAFGLPAEQYAIETGTHPKITTLRNINRFRT 172 (952)
Q Consensus 93 k~kf~i~~~~Pypng~~lHiGH~~~~~~~Di~~Ry~r~~G~~V~~~~G~D~~Glpie~~a~~~g~~~~~~~~~~~~~~~~ 172 (952)
+++|+|+.++|||||. +||||+++++++|+++||+||+|++|.|++|+|+||+||+.+|++.|++|+++++++.+.|++
T Consensus 3 ~~~~~it~~~py~ng~-~HiGH~~~~~~aDv~~R~~r~~G~~v~~~~g~D~~g~~i~~~A~~~g~~~~e~~d~~~~~fk~ 81 (648)
T PRK12267 3 KKTFYITTPIYYPNGK-PHIGHAYTTIAADALARYKRLQGYDVFFLTGTDEHGQKIQQAAEKAGKTPQEYVDEISAGFKE 81 (648)
T ss_pred CCCEEEeeCCCCCCCC-cccccchHHHHHHHHHHHHHhcCCceEeecCCCCcchHHHHHHHHcCCCHHHHHHHHHHHHHH
Confidence 4579999999999998 999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHcCCccccCCcccCCChhHHHHHHHHHHHHHHCCceeeeccccccCCCCCcccCchhhcc-CccccCCCCeEEeecc
Q 002217 173 QLKSLGFSYDWNREISTIEPAYYKWTQWIFLQLLKRGLAYQAEVPVNWCPALGTVLANEEVVD-GVSERGGHPVIRKPMR 251 (952)
Q Consensus 173 ~l~~lgi~~Dw~~~~~T~~~~~~~~v~~~f~~L~~kGliy~~~~~v~wc~~~~t~ls~~Ev~~-~~~~~~~~~~~~~~~~ 251 (952)
+|++|||++| .+++|+++.|.+.++++|.+|+++|+||++...++||+.|++.|++.++++ +.|++||.+++.+.++
T Consensus 82 ~l~~lgI~~D--~f~rTt~~~h~~~v~~~~~~L~~kG~IY~~~~~~~yc~~~~~~l~~~~l~~~~~c~~cg~~~e~~~~~ 159 (648)
T PRK12267 82 LWKKLDISYD--KFIRTTDERHKKVVQKIFEKLYEQGDIYKGEYEGWYCVSCETFFTESQLVDGGKCPDCGREVELVKEE 159 (648)
T ss_pred HHHHcCCCCC--CCeeCCCHHHHHHHHHHHHHHHHCCCEEEeeEEEeecCCCCccCChHHhccCCcCCCCCCcCeEEecc
Confidence 9999999887 899999999999999999999999999999999999999999999999988 8999999999999999
Q ss_pred ccchhhhhhhhHhhccCCCCC---CchHHHHHHHhhhccCCCceEEEEEecCCCCccCcEEEEecCCcchhccccEEEEC
Q 002217 252 QWMLKITEYADRLLDDLDDLD---WPESVKEMQRNWIGRSEGAEMDFRVLDSDGQERDIKITVYTTRPDTIFGATYLVVA 328 (952)
Q Consensus 252 ~~~~~i~~y~~~l~~~l~~~~---~p~~~~~~~~~~i~~s~~~~v~f~~~~~~~~~~~~~i~i~TT~P~Tl~g~~~v~v~ 328 (952)
||||++++|+++|.+++++.. ||+..++
T Consensus 160 ~~f~~l~~~~~~l~~~~~~~~~~~~p~~~~~------------------------------------------------- 190 (648)
T PRK12267 160 SYFFRMSKYQDRLLEYYEENPDFIQPESRKN------------------------------------------------- 190 (648)
T ss_pred eEEEEcHHHHHHHHHHHhhCCcccCCHHHHH-------------------------------------------------
Confidence 999999999999987654210 2222211
Q ss_pred CCCccchhhccccchHHHHHHHHHHhccchhhHhhhhhcccccccceEEecCCCCCcccEEecCcccCCCCCCceEecCC
Q 002217 329 PEHPLLSSLVSTTQSQNIEEYKNLASRKSDLERTELQKEKTGVFSGCYARNPASGEAIPIWVADYVLGSYGTGAIMAVPA 408 (952)
Q Consensus 329 p~~~y~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~P~~~~~~pv~~~~~V~~~~GTG~V~~~Pa 408 (952)
T Consensus 191 -------------------------------------------------------------------------------- 190 (648)
T PRK12267 191 -------------------------------------------------------------------------------- 190 (648)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CChhhHHHHHHcCCceeeeecCCCCCCccccccccccceEEcccCcccccccCCCCHHHHHHHHH-HHHHHcCCCcceec
Q 002217 409 HDTRDHEFALKFDISIHSVVMPDDESSSQSEKAYTGEGLIVNSSNLISGLDINGLSCQEATSKVI-EWAEKTGNGKKKVN 487 (952)
Q Consensus 409 h~~~D~~~~~~~~L~i~~vv~~~~~~~~~~~~~y~~~g~l~~~~~~~~~~~~~gl~~~~a~~~ii-~~l~~~~~~~~~~~ 487 (952)
.+. .|+.+
T Consensus 191 --------------------------------------------------------------~~~~~~l~~--------- 199 (648)
T PRK12267 191 --------------------------------------------------------------EMINNFIKP--------- 199 (648)
T ss_pred --------------------------------------------------------------HHHHHHhhC---------
Confidence 122 23321
Q ss_pred ccCCceeecccCC-CCcccCceEeCCCCceeecCCCCcCCCCCcccccCCCCCCCCCCccccccccccccCCCCCccccC
Q 002217 488 YKLRDWLFARQRY-WGEPIPVVFLDGTGETVPLHEAELPLTLPELDDFTPTGTGEPPLSKAVSWVQTTEHSSGKPARRET 566 (952)
Q Consensus 488 ~~l~DW~ISRQR~-WG~PIPv~~~~~~~~~~~~~~~~l~v~lp~~~~~~~~G~~~~~l~~~~~w~~~~~~~~g~~~~re~ 566 (952)
.++||||||||. ||+|||. +. .
T Consensus 200 -~l~D~~ISR~~~~WGipvP~----~~----------------------------------------------------~ 222 (648)
T PRK12267 200 -GLEDLSISRTSFDWGIPVPF----DP----------------------------------------------------K 222 (648)
T ss_pred -CCCCcccCCCCCCcceECCC----CC----------------------------------------------------C
Confidence 278999999985 9999995 10 1
Q ss_pred CCcccccccc-chhheecCCCCchhHhhhhhhhcCCCceeEecCchhhHHHHHHHHHHHHHHHHhcCcCCCCcchhhhhh
Q 002217 567 STMPQWAGSC-WYYLRFMDPKNSKELVDKTKERYWSPVDVYVGGAEHAVLHLLYARFWHKVLYDIGVVSTKEPFKCVINQ 645 (952)
Q Consensus 567 d~lD~WfdSs-wy~~~~~~p~~~~~~~~~~~~~~w~PvDlyv~G~D~~~~HLly~Rfw~~~L~~~~~~~~~~PFk~l~~~ 645 (952)
.|++|||||. .|+....+|..... +...+ +|+|+++.|+|++.+|.+ ||...|+..+ ..|++++++|
T Consensus 223 ~v~yVWfDA~~~y~s~~~~~~~~~~----~~~~~-wp~~~~~~GkDii~fH~i---~wpa~l~~~~----~~~p~~v~~h 290 (648)
T PRK12267 223 HVVYVWIDALLNYITALGYGSDDDE----LFKKF-WPADVHLVGKDILRFHAI---YWPIMLMALG----LPLPKKVFAH 290 (648)
T ss_pred CEEEEcccchHHHHHHcCCCCCCch----HHHhh-cccceEEEeeeecchhHH---HHHHHHHhCC----CCCCcEEEec
Confidence 3899999997 55554555542211 12244 599999999999999964 5777776655 4689999999
Q ss_pred ceeccccceeEEecCCCccccCCCCCcccccccccCccccccccCCceeeccCcchhhcccccccccCCCCCCChhhHHh
Q 002217 646 GIILGEMQYMVCKDVDGSYISADSTDTLGEYEQESIPEEKVMKSGDFFVMKDNPNIRLIARAHKMSKSRGNVVNPDDVVT 725 (952)
Q Consensus 646 G~vl~~~~y~~~~d~~g~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~vl~~~~~~~v~~~g~KMSKSkGNvV~P~eii~ 725 (952)
|+++.+ |+|||||+||+|+|.++++
T Consensus 291 g~l~~e-------------------------------------------------------g~KMSKS~GN~i~p~d~l~ 315 (648)
T PRK12267 291 GWWLMK-------------------------------------------------------DGKMSKSKGNVVDPEELVD 315 (648)
T ss_pred ceEEEC-------------------------------------------------------CceecccCCcccCHHHHHH
Confidence 998743 7999999999999999999
Q ss_pred hhCchhhhhhhhhcCCCCCCCCCChhhHHHHHH--HHHHHHHHHhccCCCCCCCCCCccC---CCCCChHHHHHHHHHHH
Q 002217 726 EYGADSLRLYEMFMGPFRDSKTWNTSGIEGVHR--FLGRMWRLIVGSSLPDGTFKGGTVV---NDEEPTLEQLCTLHKCI 800 (952)
Q Consensus 726 ~YGaDalRl~ll~~~~~~~~~~~s~~~i~~~~r--~l~~l~~~~~~~~~~~~~~~~~~~~---~~~~~d~~~l~~l~~~i 800 (952)
+||+|++|||++..++..+|.+|+++.+....| +.++++|++.........+..+..+ .....|.++++++++++
T Consensus 316 ~ygaD~lR~~L~~~~~~~~D~~fs~~~~~~~~n~~l~~~lgNl~~R~~~~~~~~~~~~~p~~~~~~~~D~~ll~~l~~~~ 395 (648)
T PRK12267 316 RYGLDALRYYLLREVPFGSDGDFSPEALVERINSDLANDLGNLLNRTVAMINKYFDGEIPAPGNVTEFDEELIALAEETL 395 (648)
T ss_pred HcCCcHHHHHHHhcCCCCCCCCCCHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhcCCcCCCCCCCchhhHHHHHHHHHHH
Confidence 999999999999989999999999988865432 2333333331000000000011111 12345789999999999
Q ss_pred HHHHHHHhcCChHHHHHHHHHHHHHHhc-------cc---c------------hhHHHHHHHHHHhCCcchhHHHHHHHH
Q 002217 801 AKVTEEIEGTRFNTGISAMMEFINAAYK-------WE---K------------HPRKIIEPFILLLAPYAPHMSEELWFR 858 (952)
Q Consensus 801 ~~v~~~~e~~~f~~ai~~l~~f~~~~~~-------~~---~------------~~~~vL~~l~~LLaPf~P~iaEElw~~ 858 (952)
+++.++|++|+|++|++++++|++..|. |. . .+.++|+.+++||+|||||+||+||+.
T Consensus 396 ~~v~~~~e~~~~~~al~~i~~~~~~~N~Yi~~~kpW~~~~~~~~~~~~~~~l~~~~~~l~~~~~lL~P~~P~~ae~i~~~ 475 (648)
T PRK12267 396 KNYEELMEELQFSRALEEVWKLISRANKYIDETAPWVLAKDEGKKERLATVMYHLAESLRKVAVLLSPFMPETSKKIFEQ 475 (648)
T ss_pred HHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHhCCChhhhcCcccHHHHHHHHHHHHHHHHHHHHHHhCccchHHHHHHHH
Confidence 9999999999999999999999986654 32 0 123567888899999999999999999
Q ss_pred cCCC
Q 002217 859 LGHS 862 (952)
Q Consensus 859 L~~~ 862 (952)
|+..
T Consensus 476 Lg~~ 479 (648)
T PRK12267 476 LGLE 479 (648)
T ss_pred cCCC
Confidence 9863
No 31
>PRK12268 methionyl-tRNA synthetase; Reviewed
Probab=100.00 E-value=5e-72 Score=670.42 Aligned_cols=452 Identities=23% Similarity=0.410 Sum_probs=353.9
Q ss_pred CcEEEEcCCCCCCCCCCCCchhHHH-HHHHHHHHHHHHcCCcccccccccccChHHHHHHHHhCCCchHHHHHHHHHHHH
Q 002217 94 PKFYVLDMFPYPSGAGLHVGHPLGY-TATDILARLKRMQGYNVLHPMGWDAFGLPAEQYAIETGTHPKITTLRNINRFRT 172 (952)
Q Consensus 94 ~kf~i~~~~Pypng~~lHiGH~~~~-~~~Di~~Ry~r~~G~~V~~~~G~D~~Glpie~~a~~~g~~~~~~~~~~~~~~~~ 172 (952)
++|+|+.+|||+||. |||||++++ +++|+++||+||+|++|.+++|+|+||+||+.+|++.|++++++++++.+.|++
T Consensus 3 ~~~~i~~~~py~ng~-~HiGH~~~~~~~~D~~~R~~r~~G~~v~~~~g~d~~g~~i~~~a~~~g~~~~~~~~~~~~~~~~ 81 (556)
T PRK12268 3 MRILITSAWPYANGP-LHLGHLAGSGLPADVFARYQRLKGNEVLFVSGSDEHGTPIELAAKKEGVTPQELADKYHEEHKE 81 (556)
T ss_pred CcEEEecCCCCCCCC-ccccccccchhHHHHHHHHHHhcCCceEecCcCCCcccHHHHHHHHcCCCHHHHHHHHHHHHHH
Confidence 579999999999998 999999997 999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHcCCccccCCcccCCChhHHHHHHHHHHHHHHCCceeeeccccccCCCCCcccCchhhc------------------
Q 002217 173 QLKSLGFSYDWNREISTIEPAYYKWTQWIFLQLLKRGLAYQAEVPVNWCPALGTVLANEEVV------------------ 234 (952)
Q Consensus 173 ~l~~lgi~~Dw~~~~~T~~~~~~~~v~~~f~~L~~kGliy~~~~~v~wc~~~~t~ls~~Ev~------------------ 234 (952)
++++|||++| .+++|++|+|.+.++++|.+|+++|+||++.++|+|||.|+|+|++..|.
T Consensus 82 ~~~~l~i~~d--~~~~t~~~~~~~~~~~~~~~L~~~G~~y~~~~~~~~~~~~~~~l~~~~v~g~cp~c~~~~~~G~~ce~ 159 (556)
T PRK12268 82 DFKKLGISYD--LFTRTTSPNHHEVVQEFFLKLYENGYIYKKTIEQAYCPSDGRFLPDRYVEGTCPYCGYEGARGDQCDN 159 (556)
T ss_pred HHHHcCCcCC--CCcCCCCHHHHHHHHHHHHHHHHCCCeEEeeeEEEecCCCCcCcCccceeccCCCCCCcccCCchhhh
Confidence 9999999766 68999999999999999999999999999999999999999999988774
Q ss_pred -----------cCccccCCCCeEEeeccccchhhhhhhhHhhccCCCC-CCchHHHHHHHhhhccCCCceEEEEEecCCC
Q 002217 235 -----------DGVSERGGHPVIRKPMRQWMLKITEYADRLLDDLDDL-DWPESVKEMQRNWIGRSEGAEMDFRVLDSDG 302 (952)
Q Consensus 235 -----------~~~~~~~~~~~~~~~~~~~~~~i~~y~~~l~~~l~~~-~~p~~~~~~~~~~i~~s~~~~v~f~~~~~~~ 302 (952)
++.|++||.+++.+.++||||++++|++.|.+.++.. .||+..++...+|
T Consensus 160 cg~~~~~~~l~~p~~~~~~~~~e~~~~~qwF~~l~~~~~~l~~~~~~~~~~p~~~~~~~~~~------------------ 221 (556)
T PRK12268 160 CGALLDPTDLINPRSKISGSTPEFRETEHFFLDLPAFAERLRAWIESSGDWPPNVLNFTLNW------------------ 221 (556)
T ss_pred ccccCChHHhcCCccccCCCcCeEEecceEEEEhHHHHHHHHHHHhhccCCCHHHHHHHHHH------------------
Confidence 2355667778899999999999999999988776532 2454443332222
Q ss_pred CccCcEEEEecCCcchhccccEEEECCCCccchhhccccchHHHHHHHHHHhccchhhHhhhhhcccccccceEEecCCC
Q 002217 303 QERDIKITVYTTRPDTIFGATYLVVAPEHPLLSSLVSTTQSQNIEEYKNLASRKSDLERTELQKEKTGVFSGCYARNPAS 382 (952)
Q Consensus 303 ~~~~~~i~i~TT~P~Tl~g~~~v~v~p~~~y~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~P~~ 382 (952)
T Consensus 222 -------------------------------------------------------------------------------- 221 (556)
T PRK12268 222 -------------------------------------------------------------------------------- 221 (556)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CCcccEEecCcccCCCCCCceEecCCCChhhHHHHHHcCCceeeeecCCCCCCccccccccccceEEcccCcccccccCC
Q 002217 383 GEAIPIWVADYVLGSYGTGAIMAVPAHDTRDHEFALKFDISIHSVVMPDDESSSQSEKAYTGEGLIVNSSNLISGLDING 462 (952)
Q Consensus 383 ~~~~pv~~~~~V~~~~GTG~V~~~Pah~~~D~~~~~~~~L~i~~vv~~~~~~~~~~~~~y~~~g~l~~~~~~~~~~~~~g 462 (952)
T Consensus 222 -------------------------------------------------------------------------------- 221 (556)
T PRK12268 222 -------------------------------------------------------------------------------- 221 (556)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CCHHHHHHHHHHHHHHcCCCcceecccCCceeecccCCCCcccCceEeCCCCceeecCCCCcCCCCCcccccCCCCCCCC
Q 002217 463 LSCQEATSKVIEWAEKTGNGKKKVNYKLRDWLFARQRYWGEPIPVVFLDGTGETVPLHEAELPLTLPELDDFTPTGTGEP 542 (952)
Q Consensus 463 l~~~~a~~~ii~~l~~~~~~~~~~~~~l~DW~ISRQR~WG~PIPv~~~~~~~~~~~~~~~~l~v~lp~~~~~~~~G~~~~ 542 (952)
+.+ +++||||||||+||+||| |.+++ +.
T Consensus 222 -------------l~~----------~l~Dw~ISR~~~WGipiP-~~~~~-~~--------------------------- 249 (556)
T PRK12268 222 -------------LKE----------GLKPRAITRDLDWGIPVP-WPGFE-GK--------------------------- 249 (556)
T ss_pred -------------HhC----------CCCCcCceeeCCCCeeCC-CCCCC-Cc---------------------------
Confidence 211 267999999999999999 66532 21
Q ss_pred CCccccccccccccCCCCCccccCCCccccccccchhheecCCCCchhHhh-----hhhhhcCC---CceeEecCchhhH
Q 002217 543 PLSKAVSWVQTTEHSSGKPARRETSTMPQWAGSCWYYLRFMDPKNSKELVD-----KTKERYWS---PVDVYVGGAEHAV 614 (952)
Q Consensus 543 ~l~~~~~w~~~~~~~~g~~~~re~d~lD~WfdSswy~~~~~~p~~~~~~~~-----~~~~~~w~---PvDlyv~G~D~~~ 614 (952)
++++|||+...|+.... ...+ .....+|+ |.++++.|+|++.
T Consensus 250 -------------------------~iyvW~da~~~y~~~~~-----~~~~~~g~~~~~~~~w~ds~~~~~~~~G~D~~~ 299 (556)
T PRK12268 250 -------------------------VFYVWFDAVIGYISASK-----EWAERTGDPEAWKEFWLDPETKSYYFIGKDNIP 299 (556)
T ss_pred -------------------------EEEEeehHhhHHHHHHH-----HHHHhcCCchHHHHHhCCCCCeEEEEEeeccCc
Confidence 34566665432221100 0000 01112332 6789999999987
Q ss_pred HHHHHHHHHHHHHHHhcCcCCCCcchhhhhhceeccccceeEEecCCCccccCCCCCcccccccccCccccccccCCcee
Q 002217 615 LHLLYARFWHKVLYDIGVVSTKEPFKCVINQGIILGEMQYMVCKDVDGSYISADSTDTLGEYEQESIPEEKVMKSGDFFV 694 (952)
Q Consensus 615 ~HLly~Rfw~~~L~~~~~~~~~~PFk~l~~~G~vl~~~~y~~~~d~~g~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~v 694 (952)
+|. .+|...++..+. ....| +++++||||+.
T Consensus 300 Fh~---~~~p~~l~~~~~-~~~~P-~~v~~~G~v~~-------------------------------------------- 330 (556)
T PRK12268 300 FHS---IIWPAMLLGSGE-PLKLP-DEIVSSEYLTL-------------------------------------------- 330 (556)
T ss_pred chH---HHHHHHHHhcCC-CCCCC-CEeeccCCEEE--------------------------------------------
Confidence 774 456666666553 23455 58899998863
Q ss_pred eccCcchhhcccccccccCCCCCCChhhHHhhhCchhhhhhhhhcCCCCCCCCCChhhHHHH---------HHHHHHHHH
Q 002217 695 MKDNPNIRLIARAHKMSKSRGNVVNPDDVVTEYGADSLRLYEMFMGPFRDSKTWNTSGIEGV---------HRFLGRMWR 765 (952)
Q Consensus 695 l~~~~~~~v~~~g~KMSKSkGNvV~P~eii~~YGaDalRl~ll~~~~~~~~~~~s~~~i~~~---------~r~l~~l~~ 765 (952)
+|+|||||+||+|+|.++|++||+|++|||+++.++..++.+|+++.+... .++++|+.+
T Consensus 331 -----------~G~KMSKS~GN~I~p~dli~~yGaDalR~~ll~~~~~~~d~~f~~~~~~~~~~~~~~~~l~n~~~r~~~ 399 (556)
T PRK12268 331 -----------EGGKFSKSRGWGIWVDDALERYPPDYLRYYLAANAPENSDTDFTWEEFVRRVNSELADKYGNLVNRVLS 399 (556)
T ss_pred -----------CCeeeccCCCcccCHHHHHHHcCcHHHHHHHHhcCCCCCCCCCCHHHHHHHHhHHhhhhHHHHHHHHHH
Confidence 289999999999999999999999999999999888889999998876532 233333444
Q ss_pred HHhccCCCCCCCCCCccCCCCCChHHHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHhcccc--------------
Q 002217 766 LIVGSSLPDGTFKGGTVVNDEEPTLEQLCTLHKCIAKVTEEIEGTRFNTGISAMMEFINAAYKWEK-------------- 831 (952)
Q Consensus 766 ~~~~~~~~~~~~~~~~~~~~~~~d~~~l~~l~~~i~~v~~~~e~~~f~~ai~~l~~f~~~~~~~~~-------------- 831 (952)
++.... +.... .......|.+++++++++++.++++|++|+|+.|++.+++|++.++.+..
T Consensus 400 ~~~~~~--~~~~~---~~~~~~~d~~ll~~l~~~~~~v~~~~~~~~~~~a~~~l~~~~~~~n~yi~~~kpw~~~~~~~~~ 474 (556)
T PRK12268 400 FIEKYF--GGIVP---PGELGDEDRELIAEAEALFKEVGELLEAGEFKKALEEIMELAREANKYLDEKAPWKLAKTDRER 474 (556)
T ss_pred HHHHhc--CCcCC---CCcCCcccHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHcCCChhhhcCCHHH
Confidence 432211 01010 01124568999999999999999999999999999999999976654311
Q ss_pred ------hhHHHHHHHHHHhCCcchhHHHHHHHHcCCCCCccccCCCCCC
Q 002217 832 ------HPRKIIEPFILLLAPYAPHMSEELWFRLGHSNSLAYESFPKAN 874 (952)
Q Consensus 832 ------~~~~vL~~l~~LLaPf~P~iaEElw~~L~~~~sV~~~~WP~~~ 874 (952)
...++|+.+++||+|||||+|||||+.|+. +++..+.||...
T Consensus 475 ~~~~l~~~~~~l~~~~~lL~P~~P~~aeei~~~Lg~-~~~~~~~w~~~~ 522 (556)
T PRK12268 475 AATVLYTALNLVRLLAVLLYPFLPFSAQKIWEMLGG-ENIEKLTWESLK 522 (556)
T ss_pred HHHHHHHHHHHHHHHHHHhhCccchHHHHHHHHhCC-CCCcccchhhhc
Confidence 112577889999999999999999999987 467788999764
No 32
>PLN02224 methionine-tRNA ligase
Probab=100.00 E-value=5.2e-70 Score=645.04 Aligned_cols=444 Identities=22% Similarity=0.356 Sum_probs=353.8
Q ss_pred CCCCcEEEEcCCCCCCCCCCCCchhHHHHHHHHHHHHHHHcCCcccccccccccChHHHHHHHHhCCCchHHHHHHHHHH
Q 002217 91 TSKPKFYVLDMFPYPSGAGLHVGHPLGYTATDILARLKRMQGYNVLHPMGWDAFGLPAEQYAIETGTHPKITTLRNINRF 170 (952)
Q Consensus 91 ~~k~kf~i~~~~Pypng~~lHiGH~~~~~~~Di~~Ry~r~~G~~V~~~~G~D~~Glpie~~a~~~g~~~~~~~~~~~~~~ 170 (952)
..+++|+|+++||||||. |||||+++++++|+++||+||+|++|.|++|||+||+||+.+|.+.|.+|.++|+++.+.|
T Consensus 66 ~~~~~~~ittp~pY~NG~-~HiGHa~~~~~aDviaR~~r~~G~~V~fv~G~DehG~kI~~~A~~~g~~p~e~~~~~~~~~ 144 (616)
T PLN02224 66 DEADTFVLTTPLYYVNAP-PHMGSAYTTIAADSIARFQRLLGKKVIFITGTDEHGEKIATSAAANGRNPPEHCDIISQSY 144 (616)
T ss_pred CCCCeEEEeCCCCCCCCC-CchhccHHHHHHHHHHHHHHhcCCceEEecCcCCcchHHHHHHHHcCCChHHHHHHHHHHH
Confidence 357789999999999998 9999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHcCCccccCCcccCCChhHHHHHHHHHHHHHHCCceeeeccccccCCCCCcccCchhhcc-CccccCCCCeEEee
Q 002217 171 RTQLKSLGFSYDWNREISTIEPAYYKWTQWIFLQLLKRGLAYQAEVPVNWCPALGTVLANEEVVD-GVSERGGHPVIRKP 249 (952)
Q Consensus 171 ~~~l~~lgi~~Dw~~~~~T~~~~~~~~v~~~f~~L~~kGliy~~~~~v~wc~~~~t~ls~~Ev~~-~~~~~~~~~~~~~~ 249 (952)
++++++|||++| ++++|++|.|.+.|+++|.+|+++|+||++.++++|||+|++.+++.|+.+ ++|..||.+++.++
T Consensus 145 ~~~~~~l~I~~D--~f~rTt~~~h~~~vq~~f~~L~~~G~Iy~~~~~~~yc~~ce~f~~~~~l~~~~~~~~~~~~~~~~~ 222 (616)
T PLN02224 145 RTLWKDLDIAYD--KFIRTTDPKHEAIVKEFYARVFANGDIYRADYEGLYCVNCEEYKDEKELLENNCCPVHQMPCVARK 222 (616)
T ss_pred HHHHHHcCCCCC--cCeeCCCHHHHHHHHHHHHHHHHCCCEEEeeeeeeecCCCCCCCCHHHHcCCCCCCCCCCcceEEe
Confidence 999999999666 999999999999999999999999999999999999999999999999975 57889999999999
Q ss_pred ccccchhhhhhhhHhhccCCCCC---CchHHHHHHHhhhccCCCceEEEEEecCCCCccCcEEEEecCCcchhccccEEE
Q 002217 250 MRQWMLKITEYADRLLDDLDDLD---WPESVKEMQRNWIGRSEGAEMDFRVLDSDGQERDIKITVYTTRPDTIFGATYLV 326 (952)
Q Consensus 250 ~~~~~~~i~~y~~~l~~~l~~~~---~p~~~~~~~~~~i~~s~~~~v~f~~~~~~~~~~~~~i~i~TT~P~Tl~g~~~v~ 326 (952)
+++|||+|++|++.|.++++... +|..
T Consensus 223 e~~~ff~Ls~~~~~L~~~~~~~~~~~~p~~-------------------------------------------------- 252 (616)
T PLN02224 223 EDNYFFALSKYQKPLEDILAQNPRFVQPSY-------------------------------------------------- 252 (616)
T ss_pred cceEEEEhHHHHHHHHHHHHhCCCccCCHH--------------------------------------------------
Confidence 99999999999999877653210 0111
Q ss_pred ECCCCccchhhccccchHHHHHHHHHHhccchhhHhhhhhcccccccceEEecCCCCCcccEEecCcccCCCCCCceEec
Q 002217 327 VAPEHPLLSSLVSTTQSQNIEEYKNLASRKSDLERTELQKEKTGVFSGCYARNPASGEAIPIWVADYVLGSYGTGAIMAV 406 (952)
Q Consensus 327 v~p~~~y~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~P~~~~~~pv~~~~~V~~~~GTG~V~~~ 406 (952)
T Consensus 253 -------------------------------------------------------------------------------- 252 (616)
T PLN02224 253 -------------------------------------------------------------------------------- 252 (616)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CCCChhhHHHHHHcCCceeeeecCCCCCCccccccccccceEEcccCcccccccCCCCHHHHHHHHHHHHHHcCCCccee
Q 002217 407 PAHDTRDHEFALKFDISIHSVVMPDDESSSQSEKAYTGEGLIVNSSNLISGLDINGLSCQEATSKVIEWAEKTGNGKKKV 486 (952)
Q Consensus 407 Pah~~~D~~~~~~~~L~i~~vv~~~~~~~~~~~~~y~~~g~l~~~~~~~~~~~~~gl~~~~a~~~ii~~l~~~~~~~~~~ 486 (952)
.+..+..||.+
T Consensus 253 -------------------------------------------------------------~~~~~~~~l~~-------- 263 (616)
T PLN02224 253 -------------------------------------------------------------RLNEVQSWIKS-------- 263 (616)
T ss_pred -------------------------------------------------------------HHHHHHHHHhc--------
Confidence 11222334421
Q ss_pred cccCCceeecccC-CCCcccCceEeCCCCceeecCCCCcCCCCCcccccCCCCCCCCCCccccccccccccCCCCCcccc
Q 002217 487 NYKLRDWLFARQR-YWGEPIPVVFLDGTGETVPLHEAELPLTLPELDDFTPTGTGEPPLSKAVSWVQTTEHSSGKPARRE 565 (952)
Q Consensus 487 ~~~l~DW~ISRQR-~WG~PIPv~~~~~~~~~~~~~~~~l~v~lp~~~~~~~~G~~~~~l~~~~~w~~~~~~~~g~~~~re 565 (952)
.|+||||||.+ .||+|+|. +.+
T Consensus 264 --gL~d~~ISR~~~~WGIpvP~----~~~--------------------------------------------------- 286 (616)
T PLN02224 264 --GLRDFSISRALVDWGIPVPD----DDK--------------------------------------------------- 286 (616)
T ss_pred --CCCCccccCCCCCCceECCC----CCC---------------------------------------------------
Confidence 28899999998 69999993 111
Q ss_pred CCCccccccccchhhee-cCCCCchhHhhhhhhhcCCCceeEecCchhhHHHHHHHHHHHHHHHHhcCcCCCCcchhhhh
Q 002217 566 TSTMPQWAGSCWYYLRF-MDPKNSKELVDKTKERYWSPVDVYVGGAEHAVLHLLYARFWHKVLYDIGVVSTKEPFKCVIN 644 (952)
Q Consensus 566 ~d~lD~WfdSswy~~~~-~~p~~~~~~~~~~~~~~w~PvDlyv~G~D~~~~HLly~Rfw~~~L~~~~~~~~~~PFk~l~~ 644 (952)
.|+.||||....|+.. ..+...... + ....+|+|.|+++.|+|++.+| +.+|..+|+..|+ .+.+++++
T Consensus 287 -~viYVWfDAl~~Yls~~~~~~~~~~~-~-~~~~~~w~~~v~~iGKDii~fH---~i~wpa~l~~~g~----~~P~~i~~ 356 (616)
T PLN02224 287 -QTIYVWFDALLGYISALTEDNKQQNL-E-TAVSFGWPASLHLIGKDILRFH---AVYWPAMLMSAGL----ELPKMVFG 356 (616)
T ss_pred -cEEEEehhhHHHHHHHhccccccccc-c-hhhccCCCcceEEEeecccccH---HHHHHHHHHHCCC----CCCcEEEe
Confidence 2678999987555542 222111000 0 0124567999999999999999 4678888776653 33388899
Q ss_pred hceeccccceeEEecCCCccccCCCCCcccccccccCccccccccCCceeeccCcchhhcccccccccCCCCCCChhhHH
Q 002217 645 QGIILGEMQYMVCKDVDGSYISADSTDTLGEYEQESIPEEKVMKSGDFFVMKDNPNIRLIARAHKMSKSRGNVVNPDDVV 724 (952)
Q Consensus 645 ~G~vl~~~~y~~~~d~~g~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~vl~~~~~~~v~~~g~KMSKSkGNvV~P~eii 724 (952)
||+++- +|+|||||+||+|+|.+++
T Consensus 357 ~g~l~~-------------------------------------------------------eG~KMSKS~GN~i~p~e~l 381 (616)
T PLN02224 357 HGFLTK-------------------------------------------------------DGMKMGKSLGNTLEPFELV 381 (616)
T ss_pred cccEec-------------------------------------------------------CCccccccCCccCCHHHHH
Confidence 997642 3899999999999999999
Q ss_pred hhhCchhhhhhhhhcCCCCCCCCCChhhHHHHH---------HHHHHHHHHHhccCCCCCCCCCCccCCCCCChHHHHHH
Q 002217 725 TEYGADSLRLYEMFMGPFRDSKTWNTSGIEGVH---------RFLGRMWRLIVGSSLPDGTFKGGTVVNDEEPTLEQLCT 795 (952)
Q Consensus 725 ~~YGaDalRl~ll~~~~~~~~~~~s~~~i~~~~---------r~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~d~~~l~~ 795 (952)
++||+|++||||++.++..++.+|+++.+.... |+++|++.++... . +...... ......+.+++++
T Consensus 382 ~~ygaD~~R~yLl~~~p~~~d~~fs~~~~~~~~NseLan~lgNll~R~l~~~~k~-~-~~~~~~~--~~~~~~d~~l~~~ 457 (616)
T PLN02224 382 QKFGPDAVRYFFLREVEFGNDGDYSEDRFIKIVNAHLANTIGNLLNRTLGLLKKN-C-ESTLVED--STVAAEGVPLKDT 457 (616)
T ss_pred HHcCcHHHHHHHHhcCCCcCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-c-CCcCCCc--cccccccHHHHHH
Confidence 999999999999999999999999988765432 3333333333211 0 0110000 0112346788999
Q ss_pred HHHHHHHHHHHHhcCChHHHHHHHHHHHHHHhc-------cc----c------------hhHHHHHHHHHHhCCcchhHH
Q 002217 796 LHKCIAKVTEEIEGTRFNTGISAMMEFINAAYK-------WE----K------------HPRKIIEPFILLLAPYAPHMS 852 (952)
Q Consensus 796 l~~~i~~v~~~~e~~~f~~ai~~l~~f~~~~~~-------~~----~------------~~~~vL~~l~~LLaPf~P~ia 852 (952)
++++++++.++|++|+|++|+..+|+|++.+|. |. . .+.++|+.+++||+|||||+|
T Consensus 458 l~~li~~v~~~me~~~~~~Al~~i~el~~~~N~Yi~~~~PW~l~k~~~~~~~~~~~~l~~l~e~lr~~a~LLaPf~P~~A 537 (616)
T PLN02224 458 VEKLVEKAQTNYENLSLSSACEAVLEIGNAGNTYMDQRAPWFLFKQGGVSAEEAAKDLVIILEVMRVIAVALSPIAPCLS 537 (616)
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHhCCchhhhccccccHHHHHHHHHHHHHHHHHHHHHHhccccHHH
Confidence 999999999999999999999999999987764 31 0 123678899999999999999
Q ss_pred HHHHHHcCCC
Q 002217 853 EELWFRLGHS 862 (952)
Q Consensus 853 EElw~~L~~~ 862 (952)
|+||+.||..
T Consensus 538 e~I~~~Lg~~ 547 (616)
T PLN02224 538 LRIYSQLGYS 547 (616)
T ss_pred HHHHHHhCCC
Confidence 9999999853
No 33
>TIGR00398 metG methionyl-tRNA synthetase. The methionyl-tRNA synthetase (metG) is a class I amino acyl-tRNA ligase. This model appears to recognize the methionyl-tRNA synthetase of every species, including eukaryotic cytosolic and mitochondrial forms. The UPGMA difference tree calculated after search and alignment according to this model shows an unusual deep split between two families of MetG. One family contains forms from the Archaea, yeast cytosol, spirochetes, and E. coli, among others. The other family includes forms from yeast mitochondrion, Synechocystis sp., Bacillus subtilis, the Mycoplasmas, Aquifex aeolicus, and Helicobacter pylori. The E. coli enzyme is homodimeric, although monomeric forms can be prepared that are fully active. Activity of this enzyme in bacteria includes aminoacylation of fMet-tRNA with Met; subsequent formylation of the Met to fMet is catalyzed by a separate enzyme. Note that the protein from Aquifex aeolicus is split into an alpha (large) and beta (sma
Probab=100.00 E-value=9.5e-70 Score=647.20 Aligned_cols=438 Identities=24% Similarity=0.396 Sum_probs=351.7
Q ss_pred EEEEcCCCCCCCCCCCCchhHHHHHHHHHHHHHHHcCCcccccccccccChHHHHHHHHhCCCchHHHHHHHHHHHHHHH
Q 002217 96 FYVLDMFPYPSGAGLHVGHPLGYTATDILARLKRMQGYNVLHPMGWDAFGLPAEQYAIETGTHPKITTLRNINRFRTQLK 175 (952)
Q Consensus 96 f~i~~~~Pypng~~lHiGH~~~~~~~Di~~Ry~r~~G~~V~~~~G~D~~Glpie~~a~~~g~~~~~~~~~~~~~~~~~l~ 175 (952)
|+|+.+||||||. |||||+++++.+|+++||+||+|++|.+++|+|+||+||+.+|+++|++|+++++++.+.|+++++
T Consensus 1 ~~it~~~P~~ng~-lHiGH~~~~~~aDvl~R~~r~~G~~V~~v~g~D~~g~~i~~~a~~~g~~~~e~~~~~~~~~~~~l~ 79 (530)
T TIGR00398 1 ILITTALPYANGK-PHLGHAYTTILADVYARYKRLRGYEVLFVCGTDEHGTKIELKAEQEGLTPKELVDKYHEEFKDDWK 79 (530)
T ss_pred CEEecCCCCCCCC-cccchhHHHHHHHHHHHHHHhcCCeEEEecccCCCCcHHHHHHHHcCCCHHHHHHHHHHHHHHHHH
Confidence 6899999999998 999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HcCCccccCCcccCCChhHHHHHHHHHHHHHHCCceeeeccccccCCCCCcccCchhh----------------------
Q 002217 176 SLGFSYDWNREISTIEPAYYKWTQWIFLQLLKRGLAYQAEVPVNWCPALGTVLANEEV---------------------- 233 (952)
Q Consensus 176 ~lgi~~Dw~~~~~T~~~~~~~~v~~~f~~L~~kGliy~~~~~v~wc~~~~t~ls~~Ev---------------------- 233 (952)
+|||++| .+++|+++.|.+.++++|.+|+++|+||++..+|+||+.|+|+|++.+|
T Consensus 80 ~LgI~~D--~~~~t~~~~~~~~v~~~~~~L~~kG~iY~~~~~v~~~~~~~~~l~~~~v~g~cp~c~~~~~~g~~ce~cg~ 157 (530)
T TIGR00398 80 WLNISFD--RFIRTTDEEHKEIVQKIFQKLKENGYIYEKEIKQLYCPECEMFLPDRYVEGTCPKCGSEDARGDHCEVCGR 157 (530)
T ss_pred HhCCCCC--CCccCCCHHHHHHHHHHHHHHHHCCCEEEeeeEEEecCCCCcCCchhhhcCCCCCCCCcccccchhhhccc
Confidence 9999887 6788999999999999999999999999999999999999999999854
Q ss_pred -------ccCccccCCCCeEEeeccccchhhhhhhhHhhccCCC---C-CCchHHHHHHHhhhccCCCceEEEEEecCCC
Q 002217 234 -------VDGVSERGGHPVIRKPMRQWMLKITEYADRLLDDLDD---L-DWPESVKEMQRNWIGRSEGAEMDFRVLDSDG 302 (952)
Q Consensus 234 -------~~~~~~~~~~~~~~~~~~~~~~~i~~y~~~l~~~l~~---~-~~p~~~~~~~~~~i~~s~~~~v~f~~~~~~~ 302 (952)
.++.|++||.+++.+.++||||++++|++.|++++++ . .||+.++++..+
T Consensus 158 ~~~~~~l~~p~~~~~~~~~e~~~~~~~f~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~------------------- 218 (530)
T TIGR00398 158 HLEPTELINPRCKICGAKPELRDSEHYFFRLSAFEKELEEWIRKNPESGSPASNVKNKAQN------------------- 218 (530)
T ss_pred cCCHHHhcCCccccCCCcceEEecceEEEEhHHHHHHHHHHHHhCCccCCCcHHHHHHHHH-------------------
Confidence 3445778899999999999999999999999887642 1 133333222222
Q ss_pred CccCcEEEEecCCcchhccccEEEECCCCccchhhccccchHHHHHHHHHHhccchhhHhhhhhcccccccceEEecCCC
Q 002217 303 QERDIKITVYTTRPDTIFGATYLVVAPEHPLLSSLVSTTQSQNIEEYKNLASRKSDLERTELQKEKTGVFSGCYARNPAS 382 (952)
Q Consensus 303 ~~~~~~i~i~TT~P~Tl~g~~~v~v~p~~~y~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~P~~ 382 (952)
T Consensus 219 -------------------------------------------------------------------------------- 218 (530)
T TIGR00398 219 -------------------------------------------------------------------------------- 218 (530)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CCcccEEecCcccCCCCCCceEecCCCChhhHHHHHHcCCceeeeecCCCCCCccccccccccceEEcccCcccccccCC
Q 002217 383 GEAIPIWVADYVLGSYGTGAIMAVPAHDTRDHEFALKFDISIHSVVMPDDESSSQSEKAYTGEGLIVNSSNLISGLDING 462 (952)
Q Consensus 383 ~~~~pv~~~~~V~~~~GTG~V~~~Pah~~~D~~~~~~~~L~i~~vv~~~~~~~~~~~~~y~~~g~l~~~~~~~~~~~~~g 462 (952)
T Consensus 219 -------------------------------------------------------------------------------- 218 (530)
T TIGR00398 219 -------------------------------------------------------------------------------- 218 (530)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CCHHHHHHHHHHHHHHcCCCcceecccCCceeecccCC-CCcccCceEeCCCCceeecCCCCcCCCCCcccccCCCCCCC
Q 002217 463 LSCQEATSKVIEWAEKTGNGKKKVNYKLRDWLFARQRY-WGEPIPVVFLDGTGETVPLHEAELPLTLPELDDFTPTGTGE 541 (952)
Q Consensus 463 l~~~~a~~~ii~~l~~~~~~~~~~~~~l~DW~ISRQR~-WG~PIPv~~~~~~~~~~~~~~~~l~v~lp~~~~~~~~G~~~ 541 (952)
|+.+ .++|||||||+. ||+|||.| ++
T Consensus 219 ------------~l~~----------~l~d~~iSR~~~~WGipvP~~----~~--------------------------- 245 (530)
T TIGR00398 219 ------------WLKG----------GLKDLAITRDLVYWGIPVPND----PN--------------------------- 245 (530)
T ss_pred ------------HHhC----------CCCCccccCcCCCCCeeCCCC----CC---------------------------
Confidence 2211 278999999999 99999974 11
Q ss_pred CCCccccccccccccCCCCCccccCCCccccccccchhhe-ecCCCCchhHhhhhhhhcCCCce-----eEecCchhhHH
Q 002217 542 PPLSKAVSWVQTTEHSSGKPARRETSTMPQWAGSCWYYLR-FMDPKNSKELVDKTKERYWSPVD-----VYVGGAEHAVL 615 (952)
Q Consensus 542 ~~l~~~~~w~~~~~~~~g~~~~re~d~lD~WfdSswy~~~-~~~p~~~~~~~~~~~~~~w~PvD-----lyv~G~D~~~~ 615 (952)
.|+++|||+...|+. ...+..... . .+.|+|.| +++.|+|++.+
T Consensus 246 -------------------------~~~yvW~da~~~y~~~~~~~~~~~~----~-~~~~w~~~~~~~~v~~~G~Di~~~ 295 (530)
T TIGR00398 246 -------------------------KVVYVWFDALIGYISSLGILSGDTE----D-WKKWWNNDEDAELIHFIGKDIVRF 295 (530)
T ss_pred -------------------------cEEEEeecchHHhHhhhccccCChh----h-HHHhCCCCCCceEEEEEecccchh
Confidence 257899998633332 223322111 1 13456999 99999999988
Q ss_pred HHHHHHHHHHHHHHhcCcCCCCcchhhhhhceeccccceeEEecCCCccccCCCCCcccccccccCccccccccCCceee
Q 002217 616 HLLYARFWHKVLYDIGVVSTKEPFKCVINQGIILGEMQYMVCKDVDGSYISADSTDTLGEYEQESIPEEKVMKSGDFFVM 695 (952)
Q Consensus 616 HLly~Rfw~~~L~~~~~~~~~~PFk~l~~~G~vl~~~~y~~~~d~~g~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~vl 695 (952)
|. .+|...|...| ..|++++++||||+.+
T Consensus 296 h~---~~~~a~l~~~~----~~~~~~~~~~g~v~~~-------------------------------------------- 324 (530)
T TIGR00398 296 HT---IYWPAMLMGLG----LPLPTQVFSHGYLTVE-------------------------------------------- 324 (530)
T ss_pred HH---HHHHHHHHhCC----CCCCCEEEeeccEEEC--------------------------------------------
Confidence 84 46766666655 3678999999999743
Q ss_pred ccCcchhhcccccccccCCCCCCChhhHHhhhCchhhhhhhhhcCCCCCCCCCChhhHHHHH--HHHHHHHHHH---hcc
Q 002217 696 KDNPNIRLIARAHKMSKSRGNVVNPDDVVTEYGADSLRLYEMFMGPFRDSKTWNTSGIEGVH--RFLGRMWRLI---VGS 770 (952)
Q Consensus 696 ~~~~~~~v~~~g~KMSKSkGNvV~P~eii~~YGaDalRl~ll~~~~~~~~~~~s~~~i~~~~--r~l~~l~~~~---~~~ 770 (952)
|+|||||+||+|+|.++|++||+|++|||+++.++..++.+|+++.+.... ++++++++++ ++.
T Consensus 325 -----------g~KmSKS~Gn~i~~~d~i~~~g~D~lR~~l~~~~~~~~d~~f~~~~l~~~~n~~l~~~l~n~~~r~~~~ 393 (530)
T TIGR00398 325 -----------GGKMSKSLGNVVDPSDLLARFGADILRYYLLKERPLGKDGDFSWEDFVERVNADLANKLGNLLNRTLGF 393 (530)
T ss_pred -----------CceecccCCceecHHHHHHHcCchHHHHHHhhCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 799999999999999999999999999999988888999999998887653 3344444432 111
Q ss_pred CC--CCCCCCCCccCCCCCChHHHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHhcccc-----------------
Q 002217 771 SL--PDGTFKGGTVVNDEEPTLEQLCTLHKCIAKVTEEIEGTRFNTGISAMMEFINAAYKWEK----------------- 831 (952)
Q Consensus 771 ~~--~~~~~~~~~~~~~~~~d~~~l~~l~~~i~~v~~~~e~~~f~~ai~~l~~f~~~~~~~~~----------------- 831 (952)
.. .++..... ......|.+++++++++++.+.++|++|+|+.|++.+++|++..+.+..
T Consensus 394 ~~~~~~~~~~~~--~~~~~~d~~ll~~l~~~~~~v~~a~e~~~~~~a~~~l~~l~~~~n~Yi~~~kpw~~~~~~~~~~~~ 471 (530)
T TIGR00398 394 IKKYFNGVLPSE--DITDEEDKKLLKLINEALEQIDEAIESFEFRKALREIMKLADRGNKYIDENKPWELFKQSPRLKEL 471 (530)
T ss_pred HHHhcCCcCCCC--cccchhhHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHHHhcCCChhhcCChHHHHHH
Confidence 00 00101100 0113457889999999999999999999999999999999976655421
Q ss_pred --hhHHHHHHHHHHhCCcchhHHHHHHHHcCCC
Q 002217 832 --HPRKIIEPFILLLAPYAPHMSEELWFRLGHS 862 (952)
Q Consensus 832 --~~~~vL~~l~~LLaPf~P~iaEElw~~L~~~ 862 (952)
.+.++++.++++|+|||||+|||||+.|+..
T Consensus 472 ~~~l~~~l~~l~~ll~P~~P~~ae~i~~~L~~~ 504 (530)
T TIGR00398 472 LAVCSMLIRVLSILLYPIMPKLSEKILKFLNFE 504 (530)
T ss_pred HHHHHHHHHHHHHHHhCcccHHHHHHHHHhCCC
Confidence 1237899999999999999999999999853
No 34
>PRK11893 methionyl-tRNA synthetase; Reviewed
Probab=100.00 E-value=9.1e-69 Score=637.73 Aligned_cols=441 Identities=26% Similarity=0.415 Sum_probs=350.1
Q ss_pred CcEEEEcCCCCCCCCCCCCchhHHHHHHHHHHHHHHHcCCcccccccccccChHHHHHHHHhCCCchHHHHHHHHHHHHH
Q 002217 94 PKFYVLDMFPYPSGAGLHVGHPLGYTATDILARLKRMQGYNVLHPMGWDAFGLPAEQYAIETGTHPKITTLRNINRFRTQ 173 (952)
Q Consensus 94 ~kf~i~~~~Pypng~~lHiGH~~~~~~~Di~~Ry~r~~G~~V~~~~G~D~~Glpie~~a~~~g~~~~~~~~~~~~~~~~~ 173 (952)
++|+|+++||||||. +||||+++++++|+++||+||+|++|.+++|+|+||+||+..|++.|+++.++++++.+.|+++
T Consensus 1 ~~~~i~~~~P~~~g~-~HiGh~~~~~~~Dv~~R~~r~~G~~v~~v~g~dd~g~~i~~~a~~~g~~~~~~~~~~~~~~~~~ 79 (511)
T PRK11893 1 KKFYITTPIYYPNGK-PHIGHAYTTLAADVLARFKRLRGYDVFFLTGTDEHGQKIQRKAEEAGISPQELADRNSAAFKRL 79 (511)
T ss_pred CCEEEecCCCCCCCC-cccchhHHHHHHHHHHHHHHhcCCcEEecCCCCCCChHHHHHHHHcCCCHHHHHHHHHHHHHHH
Confidence 469999999999998 9999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHcCCccccCCcccCCChhHHHHHHHHHHHHHHCCceeeeccccccCCCCCcccCchhhccC--ccccCCCCeEEeecc
Q 002217 174 LKSLGFSYDWNREISTIEPAYYKWTQWIFLQLLKRGLAYQAEVPVNWCPALGTVLANEEVVDG--VSERGGHPVIRKPMR 251 (952)
Q Consensus 174 l~~lgi~~Dw~~~~~T~~~~~~~~v~~~f~~L~~kGliy~~~~~v~wc~~~~t~ls~~Ev~~~--~~~~~~~~~~~~~~~ 251 (952)
|++|||.+| .++.|+++.|.+.++++|.+|+++|+||++..+|+||+.|+++|++.|+.++ +|++||.+++.++++
T Consensus 80 l~~l~I~~D--~~~~t~~~~~~~~v~~~~~~L~~~G~iY~~~~~~~~~~~~~~~l~~~~l~~~~p~~~~~~~~~~~~~~~ 157 (511)
T PRK11893 80 WEALNISYD--DFIRTTDPRHKEAVQEIFQRLLANGDIYLGKYEGWYCVRCEEFYTESELIEDGYRCPPTGAPVEWVEEE 157 (511)
T ss_pred HHHhCCCcC--CceeCCCHHHHHHHHHHHHHHHHCCCEEEeeeeeeccccccccCCHHHhcCCCCCCCCCCCcceEEecC
Confidence 999999877 7889999999999999999999999999999999999999999999999984 599999999999999
Q ss_pred ccchhhhhhhhHhhccCCCC-C--CchHHHHHHHhhhccCCCceEEEEEecCCCCccCcEEEEecCCcchhccccEEEEC
Q 002217 252 QWMLKITEYADRLLDDLDDL-D--WPESVKEMQRNWIGRSEGAEMDFRVLDSDGQERDIKITVYTTRPDTIFGATYLVVA 328 (952)
Q Consensus 252 ~~~~~i~~y~~~l~~~l~~~-~--~p~~~~~~~~~~i~~s~~~~v~f~~~~~~~~~~~~~i~i~TT~P~Tl~g~~~v~v~ 328 (952)
||||++++|++.|.+.+++. . ||+..
T Consensus 158 ~~f~~l~~~~~~l~~~~~~~~~~~~p~~~--------------------------------------------------- 186 (511)
T PRK11893 158 SYFFRLSKYQDKLLELYEANPDFIQPASR--------------------------------------------------- 186 (511)
T ss_pred eEEEEcHHHHHHHHHHHHhCCCccCCHHH---------------------------------------------------
Confidence 99999999988876643210 0 01100
Q ss_pred CCCccchhhccccchHHHHHHHHHHhccchhhHhhhhhcccccccceEEecCCCCCcccEEecCcccCCCCCCceEecCC
Q 002217 329 PEHPLLSSLVSTTQSQNIEEYKNLASRKSDLERTELQKEKTGVFSGCYARNPASGEAIPIWVADYVLGSYGTGAIMAVPA 408 (952)
Q Consensus 329 p~~~y~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~P~~~~~~pv~~~~~V~~~~GTG~V~~~Pa 408 (952)
T Consensus 187 -------------------------------------------------------------------------------- 186 (511)
T PRK11893 187 -------------------------------------------------------------------------------- 186 (511)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CChhhHHHHHHcCCceeeeecCCCCCCccccccccccceEEcccCcccccccCCCCHHHHHHHHHHHHHHcCCCcceecc
Q 002217 409 HDTRDHEFALKFDISIHSVVMPDDESSSQSEKAYTGEGLIVNSSNLISGLDINGLSCQEATSKVIEWAEKTGNGKKKVNY 488 (952)
Q Consensus 409 h~~~D~~~~~~~~L~i~~vv~~~~~~~~~~~~~y~~~g~l~~~~~~~~~~~~~gl~~~~a~~~ii~~l~~~~~~~~~~~~ 488 (952)
...+.+|+.+
T Consensus 187 ------------------------------------------------------------~~~~~~~l~~---------- 196 (511)
T PRK11893 187 ------------------------------------------------------------RNEVISFVKS---------- 196 (511)
T ss_pred ------------------------------------------------------------HHHHHHHHHC----------
Confidence 0111223221
Q ss_pred cCCceeecc-cCCCCcccCceEeCCCCceeecCCCCcCCCCCcccccCCCCCCCCCCccccccccccccCCCCCccccCC
Q 002217 489 KLRDWLFAR-QRYWGEPIPVVFLDGTGETVPLHEAELPLTLPELDDFTPTGTGEPPLSKAVSWVQTTEHSSGKPARRETS 567 (952)
Q Consensus 489 ~l~DW~ISR-QR~WG~PIPv~~~~~~~~~~~~~~~~l~v~lp~~~~~~~~G~~~~~l~~~~~w~~~~~~~~g~~~~re~d 567 (952)
.++|||||| |++||+|||.. + ..
T Consensus 197 ~~~D~~isR~~~~WGipiP~~---~-----------------------------------------------------~~ 220 (511)
T PRK11893 197 GLKDLSISRTNFDWGIPVPGD---P-----------------------------------------------------KH 220 (511)
T ss_pred CCCCcccCCCCCCCCccCCCC---C-----------------------------------------------------Cc
Confidence 378999999 99999999951 0 02
Q ss_pred Cccccccccchh-heecCCCCchhHhhhhhhhcCCCceeEecCchhhHHHHHHHHHHHHHHHHhcCcCCCCcchhhhhhc
Q 002217 568 TMPQWAGSCWYY-LRFMDPKNSKELVDKTKERYWSPVDVYVGGAEHAVLHLLYARFWHKVLYDIGVVSTKEPFKCVINQG 646 (952)
Q Consensus 568 ~lD~WfdSswy~-~~~~~p~~~~~~~~~~~~~~w~PvDlyv~G~D~~~~HLly~Rfw~~~L~~~~~~~~~~PFk~l~~~G 646 (952)
+++|||||++.| ...++|.+...+ .+...+|+|.|++++|+|++.+|.. +|...+... ....| +.+++||
T Consensus 221 ~~~vWfda~~~y~s~~~~p~~~~~~--~~~~~~~~~~D~~~~G~D~~~~h~~---~~~a~~~a~---~~~~p-~~~~~~g 291 (511)
T PRK11893 221 VIYVWFDALTNYLTALGYPDDEELL--AELFNKYWPADVHLIGKDILRFHAV---YWPAFLMAA---GLPLP-KRVFAHG 291 (511)
T ss_pred eEEEEecCcHHHHhHhccccccccc--hhHHHhcCCCcceEecccccccchh---HHHHHHHhC---CCCCC-CEEEeec
Confidence 678999997444 334556533211 1112456799999999999866643 344443332 34677 9999999
Q ss_pred eeccccceeEEecCCCccccCCCCCcccccccccCccccccccCCceeeccCcchhhcccccccccCCCCCCChhhHHhh
Q 002217 647 IILGEMQYMVCKDVDGSYISADSTDTLGEYEQESIPEEKVMKSGDFFVMKDNPNIRLIARAHKMSKSRGNVVNPDDVVTE 726 (952)
Q Consensus 647 ~vl~~~~y~~~~d~~g~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~vl~~~~~~~v~~~g~KMSKSkGNvV~P~eii~~ 726 (952)
||+. +|+|||||+||+|+|.+++++
T Consensus 292 ~v~~-------------------------------------------------------~G~KMSKS~GN~i~~~dll~~ 316 (511)
T PRK11893 292 FLTL-------------------------------------------------------DGEKMSKSLGNVIDPFDLVDE 316 (511)
T ss_pred cEEE-------------------------------------------------------CCeeecccCCcEEcHHHHHHH
Confidence 8863 289999999999999999999
Q ss_pred hCchhhhhhhhhcCCCCCCCCCChhhHHHHHH-----H----HHHHHHHHhccCCCCCCCCCCccCCCCCChHHHHHHHH
Q 002217 727 YGADSLRLYEMFMGPFRDSKTWNTSGIEGVHR-----F----LGRMWRLIVGSSLPDGTFKGGTVVNDEEPTLEQLCTLH 797 (952)
Q Consensus 727 YGaDalRl~ll~~~~~~~~~~~s~~~i~~~~r-----~----l~~l~~~~~~~~~~~~~~~~~~~~~~~~~d~~~l~~l~ 797 (952)
||+|++|||+++.++.+++.+|+++.+..+.+ . +.|+..++... . + ...+.. ......|.+++++++
T Consensus 317 ~g~DalR~~ll~~~~~~~d~~Fs~~~~~~~~~~~l~~~l~n~~~r~~~~~~~~-~-~-~~~~~~-~~~~~~d~~l~~~l~ 392 (511)
T PRK11893 317 YGVDAVRYFLLREIPFGQDGDFSREAFINRINADLANDLGNLAQRTLSMIAKN-F-D-GKVPEP-GALTEADEALLEAAA 392 (511)
T ss_pred cCcHHHHHHHHhcCCCCcCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-c-C-CCCCCC-cccchhhHHHHHHHH
Confidence 99999999999888989999999988865433 2 22232232111 0 0 111100 011335678889999
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHHHHhcccc--------------------hhHHHHHHHHHHhCCcchhHHHHHHH
Q 002217 798 KCIAKVTEEIEGTRFNTGISAMMEFINAAYKWEK--------------------HPRKIIEPFILLLAPYAPHMSEELWF 857 (952)
Q Consensus 798 ~~i~~v~~~~e~~~f~~ai~~l~~f~~~~~~~~~--------------------~~~~vL~~l~~LLaPf~P~iaEElw~ 857 (952)
++++.+.++|++|+|+.|++.+++|++.++.+.. .+.++++.+++||+|||||+||+||+
T Consensus 393 ~~~~~v~~~~~~~~~~~a~~~l~~l~~~~n~y~~~~~pw~~~~~~~~~~~~~l~~~~~~l~~l~~ll~P~~P~~ae~i~~ 472 (511)
T PRK11893 393 ALLERVRAAMDNLAFDKALEAILALVRAANKYIDEQAPWSLAKTDPERLATVLYTLLEVLRGIAVLLQPVMPELAAKILD 472 (511)
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHhhCCChhhhcCCHHHHHHHHHHHHHHHHHHHHHHhCccchHHHHHHH
Confidence 9999999999999999999999999987665321 12367889999999999999999999
Q ss_pred HcCCC
Q 002217 858 RLGHS 862 (952)
Q Consensus 858 ~L~~~ 862 (952)
.|+..
T Consensus 473 ~L~~~ 477 (511)
T PRK11893 473 QLGVE 477 (511)
T ss_pred HhCCC
Confidence 99853
No 35
>PRK00133 metG methionyl-tRNA synthetase; Reviewed
Probab=100.00 E-value=8e-69 Score=651.50 Aligned_cols=441 Identities=23% Similarity=0.361 Sum_probs=353.8
Q ss_pred CcEEEEcCCCCCCCCCCCCchhHHHHHHHHHHHHHHHcCCcccccccccccChHHHHHHHHhCCCchHHHHHHHHHHHHH
Q 002217 94 PKFYVLDMFPYPSGAGLHVGHPLGYTATDILARLKRMQGYNVLHPMGWDAFGLPAEQYAIETGTHPKITTLRNINRFRTQ 173 (952)
Q Consensus 94 ~kf~i~~~~Pypng~~lHiGH~~~~~~~Di~~Ry~r~~G~~V~~~~G~D~~Glpie~~a~~~g~~~~~~~~~~~~~~~~~ 173 (952)
++|+|+.+||||||. |||||+++++++|+++||+||+|++|.|++|||+||+||+.+|++.|++|+++++++.+.|+++
T Consensus 2 ~~~~itt~~py~ng~-~HiGH~~~~l~aDv~aR~~r~~G~~V~~~~g~D~hG~~i~~~A~~~g~~p~e~~~~~~~~~~~~ 80 (673)
T PRK00133 2 RKILVTCALPYANGP-IHLGHLVEYIQADIWVRYQRMRGHEVLFVCADDAHGTPIMLKAEKEGITPEELIARYHAEHKRD 80 (673)
T ss_pred CCEEEeCCCCCCCCc-ccccchHHHHHHHHHHHHHHhcCCeeEEeCccCCCChHHHHHHHHcCCCHHHHHHHHHHHHHHH
Confidence 469999999999998 9999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHcCCccccCCcccCCChhHHHHHHHHHHHHHHCCceeeeccccccCCCCCcccCchhhc-------------------
Q 002217 174 LKSLGFSYDWNREISTIEPAYYKWTQWIFLQLLKRGLAYQAEVPVNWCPALGTVLANEEVV------------------- 234 (952)
Q Consensus 174 l~~lgi~~Dw~~~~~T~~~~~~~~v~~~f~~L~~kGliy~~~~~v~wc~~~~t~ls~~Ev~------------------- 234 (952)
+++|||++| .+++|++++|.+.++++|.+|+++|+||++..+|+||+.|+++|++.+|+
T Consensus 81 ~~~l~i~~d--~f~rtt~~~h~~~v~~~~~~L~~~G~iy~~~~~~~y~~~~~~~l~~~~v~g~cp~C~~~d~~g~~ce~c 158 (673)
T PRK00133 81 FAGFGISFD--NYGSTHSEENRELAQEIYLKLKENGYIYEKTIEQLYDPEKGMFLPDRFVKGTCPKCGAEDQYGDNCEVC 158 (673)
T ss_pred HHHhCCCCC--CCccCCcHHHHHHHHHHHHHHHHCCCEEEeeeEEEEeCCCCCCccchheecccCCCCCcccCCchhhhc
Confidence 999999887 68999999999999999999999999999999999999999999987765
Q ss_pred ----------cCccccCCCCeEEeeccccchhhhhhhhHhhccCCC-CCCchHHHHHHHhhhccCCCceEEEEEecCCCC
Q 002217 235 ----------DGVSERGGHPVIRKPMRQWMLKITEYADRLLDDLDD-LDWPESVKEMQRNWIGRSEGAEMDFRVLDSDGQ 303 (952)
Q Consensus 235 ----------~~~~~~~~~~~~~~~~~~~~~~i~~y~~~l~~~l~~-~~~p~~~~~~~~~~i~~s~~~~v~f~~~~~~~~ 303 (952)
+++|.+||.+++.+.++||||++++|++.|++++++ ..||+.+++...+||
T Consensus 159 g~~~~~~~l~~~~~~~~g~~~e~~~~~~~f~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~l------------------ 220 (673)
T PRK00133 159 GATYSPTELINPKSAISGATPVLKESEHFFFKLPRFEEFLKEWITRSGELQPNVANKMKEWL------------------ 220 (673)
T ss_pred cccCChHhhcCCccccCCCcceEEecceEEEEHHHHHHHHHHHHhcCCCCCHHHHHHHHHHH------------------
Confidence 456778899999999999999999999999988754 236665555444442
Q ss_pred ccCcEEEEecCCcchhccccEEEECCCCccchhhccccchHHHHHHHHHHhccchhhHhhhhhcccccccceEEecCCCC
Q 002217 304 ERDIKITVYTTRPDTIFGATYLVVAPEHPLLSSLVSTTQSQNIEEYKNLASRKSDLERTELQKEKTGVFSGCYARNPASG 383 (952)
Q Consensus 304 ~~~~~i~i~TT~P~Tl~g~~~v~v~p~~~y~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~P~~~ 383 (952)
T Consensus 221 -------------------------------------------------------------------------------- 220 (673)
T PRK00133 221 -------------------------------------------------------------------------------- 220 (673)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CcccEEecCcccCCCCCCceEecCCCChhhHHHHHHcCCceeeeecCCCCCCccccccccccceEEcccCcccccccCCC
Q 002217 384 EAIPIWVADYVLGSYGTGAIMAVPAHDTRDHEFALKFDISIHSVVMPDDESSSQSEKAYTGEGLIVNSSNLISGLDINGL 463 (952)
Q Consensus 384 ~~~pv~~~~~V~~~~GTG~V~~~Pah~~~D~~~~~~~~L~i~~vv~~~~~~~~~~~~~y~~~g~l~~~~~~~~~~~~~gl 463 (952)
T Consensus 221 -------------------------------------------------------------------------------- 220 (673)
T PRK00133 221 -------------------------------------------------------------------------------- 220 (673)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CHHHHHHHHHHHHHHcCCCcceecccCCceeecccCCC-CcccCceEeCCCCceeecCCCCcCCCCCcccccCCCCCCCC
Q 002217 464 SCQEATSKVIEWAEKTGNGKKKVNYKLRDWLFARQRYW-GEPIPVVFLDGTGETVPLHEAELPLTLPELDDFTPTGTGEP 542 (952)
Q Consensus 464 ~~~~a~~~ii~~l~~~~~~~~~~~~~l~DW~ISRQR~W-G~PIPv~~~~~~~~~~~~~~~~l~v~lp~~~~~~~~G~~~~ 542 (952)
.+ .++|||||||+.| |+|+|- +.+
T Consensus 221 -------------~~----------~l~d~~ISR~~~W~GipvP~----~~~---------------------------- 245 (673)
T PRK00133 221 -------------EE----------GLQDWDISRDAPYFGFEIPG----APG---------------------------- 245 (673)
T ss_pred -------------hC----------CCcccceeeeCCccceECCC----CCC----------------------------
Confidence 10 2679999999999 999992 111
Q ss_pred CCccccccccccccCCCCCccccCCCccccccccchhheec--CCCCchhHhhhhhhhcCCCc----eeEecCchhhHHH
Q 002217 543 PLSKAVSWVQTTEHSSGKPARRETSTMPQWAGSCWYYLRFM--DPKNSKELVDKTKERYWSPV----DVYVGGAEHAVLH 616 (952)
Q Consensus 543 ~l~~~~~w~~~~~~~~g~~~~re~d~lD~WfdSswy~~~~~--~p~~~~~~~~~~~~~~w~Pv----Dlyv~G~D~~~~H 616 (952)
.|+++|||+.+.|+... ++...+ ......+|-|. .+++-|+|++.+|
T Consensus 246 ------------------------~~iyVW~dal~~Yl~~~~~~~~~~~---~~~~~~~w~~~~~~~~v~~iGkDi~~fH 298 (673)
T PRK00133 246 ------------------------KVFYVWLDAPIGYISSTKNLCDKRG---GLDWDEYWKKDSDTELYHFIGKDIIYFH 298 (673)
T ss_pred ------------------------eEEEEcccchhhhhHHHhhhccccc---chhHHHhcCCCCCceEEEEEeecchhHH
Confidence 25678998875444322 221100 00112444233 2888999999888
Q ss_pred HHHHHHHHHHHHHhcCcCCCCcchhhhhhceeccccceeEEecCCCccccCCCCCcccccccccCccccccccCCceeec
Q 002217 617 LLYARFWHKVLYDIGVVSTKEPFKCVINQGIILGEMQYMVCKDVDGSYISADSTDTLGEYEQESIPEEKVMKSGDFFVMK 696 (952)
Q Consensus 617 Lly~Rfw~~~L~~~~~~~~~~PFk~l~~~G~vl~~~~y~~~~d~~g~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~vl~ 696 (952)
+.+|..+|+..|+ ..| +++++||||+.+
T Consensus 299 ---~i~wpa~l~a~g~---~lP-~~v~~hg~v~~~--------------------------------------------- 326 (673)
T PRK00133 299 ---TLFWPAMLEGAGY---RLP-TNVFAHGFLTVE--------------------------------------------- 326 (673)
T ss_pred ---HHHHHHHHHhCCC---CCC-CEEeeeccEEec---------------------------------------------
Confidence 5789888877653 344 999999998742
Q ss_pred cCcchhhcccccccccCCCCCCChhhHHhhhCchhhhhhhhhcCCCC-CCCCCChhhHHHH--HHHHHHHHHHHhcc--C
Q 002217 697 DNPNIRLIARAHKMSKSRGNVVNPDDVVTEYGADSLRLYEMFMGPFR-DSKTWNTSGIEGV--HRFLGRMWRLIVGS--S 771 (952)
Q Consensus 697 ~~~~~~v~~~g~KMSKSkGNvV~P~eii~~YGaDalRl~ll~~~~~~-~~~~~s~~~i~~~--~r~l~~l~~~~~~~--~ 771 (952)
|+|||||+||+|+|.++|++||+|++|||+++.++.. +|.+|+++.+... .+++++++|++... .
T Consensus 327 ----------G~KMSKS~GNvV~p~dlie~ygaDalR~~ll~~~~~~~~D~~Fs~~~~~~~~n~~l~~~l~Nl~~R~~~~ 396 (673)
T PRK00133 327 ----------GAKMSKSRGTFIWARTYLDHLDPDYLRYYLAAKLPETIDDLDFNWEDFQQRVNSELVGKVVNFASRTAGF 396 (673)
T ss_pred ----------CCcccccCCcccCHHHHHHHcCchHHHHHHHhcCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 7999999999999999999999999999999988888 8999998876542 23445555543210 0
Q ss_pred CCCCCCCCCccCCCCCChHHHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHhcccc--------------------
Q 002217 772 LPDGTFKGGTVVNDEEPTLEQLCTLHKCIAKVTEEIEGTRFNTGISAMMEFINAAYKWEK-------------------- 831 (952)
Q Consensus 772 ~~~~~~~~~~~~~~~~~d~~~l~~l~~~i~~v~~~~e~~~f~~ai~~l~~f~~~~~~~~~-------------------- 831 (952)
.. ..+ .+.. .....|.+++++++++++++.++|++|+|+.|++.+++|++..+.+..
T Consensus 397 ~~-k~~-~~~~-~~~~~d~~ll~~l~~~~~~v~~a~e~~~~~~a~~~l~~l~~~~N~yi~~~kpw~~~~~~~~~~~~~l~ 473 (673)
T PRK00133 397 IN-KRF-DGKL-PDALADPELLEEFEAAAEKIAEAYEAREFRKALREIMALADFANKYVDDNEPWKLAKQDGERLQAVCS 473 (673)
T ss_pred HH-Hhc-CCCC-CCCcccHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHhcCChhhhcCCHHHHHHHHH
Confidence 00 001 1111 123458899999999999999999999999999999999976654311
Q ss_pred hhHHHHHHHHHHhCCcchhHHHHHHHHcCCC
Q 002217 832 HPRKIIEPFILLLAPYAPHMSEELWFRLGHS 862 (952)
Q Consensus 832 ~~~~vL~~l~~LLaPf~P~iaEElw~~L~~~ 862 (952)
...++++.+++||+|||||+||+||+.||..
T Consensus 474 ~~~~~l~~l~~lL~Pf~P~~ae~i~~~Lg~~ 504 (673)
T PRK00133 474 VGLNLFRALAIYLKPVLPELAERAEAFLNLE 504 (673)
T ss_pred HHHHHHHHHHHHhhChhchHHHHHHHHhCCC
Confidence 1125778899999999999999999999863
No 36
>PLN02610 probable methionyl-tRNA synthetase
Probab=100.00 E-value=9e-68 Score=643.18 Aligned_cols=445 Identities=19% Similarity=0.315 Sum_probs=352.3
Q ss_pred CCCCcEEEEcCCCCCCCCCCCCchhHH-HHHHHHHHHHHHHcCCcccccccccccChHHHHHHHHhCCCchHHHHHHHHH
Q 002217 91 TSKPKFYVLDMFPYPSGAGLHVGHPLG-YTATDILARLKRMQGYNVLHPMGWDAFGLPAEQYAIETGTHPKITTLRNINR 169 (952)
Q Consensus 91 ~~k~kf~i~~~~Pypng~~lHiGH~~~-~~~~Di~~Ry~r~~G~~V~~~~G~D~~Glpie~~a~~~g~~~~~~~~~~~~~ 169 (952)
.++++|||+.++|||||. |||||+++ ++.+|+++||+||+|++|+|++|+|+||+||+.+|++.|++|+++++++.+.
T Consensus 14 ~~~~~~~ITt~~pY~Ng~-~HlGH~~~~~l~aDv~aRy~r~~G~~v~f~~GtDehG~~i~~~A~~~g~~p~e~~d~~~~~ 92 (801)
T PLN02610 14 PGKRNILITSALPYVNNV-PHLGNIIGCVLSADVFARYCRLRGYNAIYICGTDEYGTATETKALEENCTPKEICDKYHAI 92 (801)
T ss_pred CCCCCEEEeCCCCCCCCC-cccchhhhhHHHHHHHHHHHHhCCCceEecccccCCcHHHHHHHHHcCCCHHHHHHHHHHH
Confidence 466789999999999998 99999997 7889999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHcCCccccCCcccCCChhHHHHHHHHHHHHHHCCceeeeccccccCCCCCcccCchhhc---------------
Q 002217 170 FRTQLKSLGFSYDWNREISTIEPAYYKWTQWIFLQLLKRGLAYQAEVPVNWCPALGTVLANEEVV--------------- 234 (952)
Q Consensus 170 ~~~~l~~lgi~~Dw~~~~~T~~~~~~~~v~~~f~~L~~kGliy~~~~~v~wc~~~~t~ls~~Ev~--------------- 234 (952)
|++++++|||++| ++++|++|.|.++||++|.+|+++|+||++.++++||+.|+++|++..|+
T Consensus 93 ~~~~~~~l~i~~D--~f~rT~~~~h~~~vq~~f~~L~~~G~Iy~~~~~~~yc~~~e~fl~d~~v~G~CP~~~C~~~~a~G 170 (801)
T PLN02610 93 HKEVYDWFDISFD--KFGRTSTPQQTEICQAIFKKLMENNWLSENTMQQLYCDTCQKFLADRLVEGTCPTEGCNYDSARG 170 (801)
T ss_pred HHHHHHHcCCccc--cCccCCCHHHHHHHHHHHHHHHHCCCEEEeeEEEeecCCCCCCcchHHhcCcCCccccCcccccc
Confidence 9999999999887 99999999999999999999999999999999999999999999987764
Q ss_pred ----------------cCccccCCCCeEEeeccccchhhhhhhhHhhccCCCC----CCchHHHHHHHhhhccCCCceEE
Q 002217 235 ----------------DGVSERGGHPVIRKPMRQWMLKITEYADRLLDDLDDL----DWPESVKEMQRNWIGRSEGAEMD 294 (952)
Q Consensus 235 ----------------~~~~~~~~~~~~~~~~~~~~~~i~~y~~~l~~~l~~~----~~p~~~~~~~~~~i~~s~~~~v~ 294 (952)
+++|.+||.+++.++++||||+|++|+++|.+++++. .|+.++..+.
T Consensus 171 d~Ce~Cg~~~~p~eLi~p~c~~~g~~~~~~~~~~~ff~Ls~~~~~L~~~~~~~~~~~~~~~n~~~~~------------- 237 (801)
T PLN02610 171 DQCEKCGKLLNPTELIDPKCKVCKNTPRIRDTDHLFLELPLLKDKLVEYINETSVAGGWSQNAIQTT------------- 237 (801)
T ss_pred chhhhccccCChhhhcCCcccCCCCcceEEEcceEEEEhHHHHHHHHHHHHhCCCCCCcCHHHHHHH-------------
Confidence 3456668899999999999999999999998765421 0222111111
Q ss_pred EEEecCCCCccCcEEEEecCCcchhccccEEEECCCCccchhhccccchHHHHHHHHHHhccchhhHhhhhhcccccccc
Q 002217 295 FRVLDSDGQERDIKITVYTTRPDTIFGATYLVVAPEHPLLSSLVSTTQSQNIEEYKNLASRKSDLERTELQKEKTGVFSG 374 (952)
Q Consensus 295 f~~~~~~~~~~~~~i~i~TT~P~Tl~g~~~v~v~p~~~y~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~l~g 374 (952)
T Consensus 238 -------------------------------------------------------------------------------- 237 (801)
T PLN02610 238 -------------------------------------------------------------------------------- 237 (801)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred eEEecCCCCCcccEEecCcccCCCCCCceEecCCCChhhHHHHHHcCCceeeeecCCCCCCccccccccccceEEcccCc
Q 002217 375 CYARNPASGEAIPIWVADYVLGSYGTGAIMAVPAHDTRDHEFALKFDISIHSVVMPDDESSSQSEKAYTGEGLIVNSSNL 454 (952)
Q Consensus 375 ~~~~~P~~~~~~pv~~~~~V~~~~GTG~V~~~Pah~~~D~~~~~~~~L~i~~vv~~~~~~~~~~~~~y~~~g~l~~~~~~ 454 (952)
T Consensus 238 -------------------------------------------------------------------------------- 237 (801)
T PLN02610 238 -------------------------------------------------------------------------------- 237 (801)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred ccccccCCCCHHHHHHHHHHHHHHcCCCcceecccCCceeecccCCCCcccCceEeCCCCceeecCCCCcCCCCCccccc
Q 002217 455 ISGLDINGLSCQEATSKVIEWAEKTGNGKKKVNYKLRDWLFARQRYWGEPIPVVFLDGTGETVPLHEAELPLTLPELDDF 534 (952)
Q Consensus 455 ~~~~~~~gl~~~~a~~~ii~~l~~~~~~~~~~~~~l~DW~ISRQR~WG~PIPv~~~~~~~~~~~~~~~~l~v~lp~~~~~ 534 (952)
.+||.+ .|+||||||.-.||+|+|. + +.
T Consensus 238 ------------------~~~l~~----------gL~d~~IsR~~~WGipvP~---~--~~------------------- 265 (801)
T PLN02610 238 ------------------NAWLRD----------GLKPRCITRDLKWGVPVPL---E--KY------------------- 265 (801)
T ss_pred ------------------HHHHhC----------CCCCcceeeecCCcccCCC---C--CC-------------------
Confidence 123321 2789999999999999995 1 10
Q ss_pred CCCCCCCCCCccccccccccccCCCCCccccCCCccccccccchhheecCCCCchhHhhhhhhhcCC-Cce---eEecCc
Q 002217 535 TPTGTGEPPLSKAVSWVQTTEHSSGKPARRETSTMPQWAGSCWYYLRFMDPKNSKELVDKTKERYWS-PVD---VYVGGA 610 (952)
Q Consensus 535 ~~~G~~~~~l~~~~~w~~~~~~~~g~~~~re~d~lD~WfdSswy~~~~~~p~~~~~~~~~~~~~~w~-PvD---lyv~G~ 610 (952)
+.-|+.||||....|+....- ...+...+|. |.| +++-|+
T Consensus 266 ------------------------------~~~v~YVWfDAl~~Yis~~~~------~~~~~~~~W~~~~~~~~~hfiGK 309 (801)
T PLN02610 266 ------------------------------KDKVFYVWFDAPIGYVSITAC------YTPEWEKWWKNPENVELYQFMGK 309 (801)
T ss_pred ------------------------------CCcEEEEehhhHHHHHHHHhh------hhhHHHHhcCCcccceEEEEEee
Confidence 013788999997666543200 0112224553 237 799999
Q ss_pred hhhHHHHHHHHHHHHHHHHhcCcCCCCcchhhhhhceeccccceeEEecCCCccccCCCCCcccccccccCccccccccC
Q 002217 611 EHAVLHLLYARFWHKVLYDIGVVSTKEPFKCVINQGIILGEMQYMVCKDVDGSYISADSTDTLGEYEQESIPEEKVMKSG 690 (952)
Q Consensus 611 D~~~~HLly~Rfw~~~L~~~~~~~~~~PFk~l~~~G~vl~~~~y~~~~d~~g~~~~~~~~~~~~~~~~~~~~~~~v~~~~ 690 (952)
|++.+| +.+|..+|+..|.- -.+.+++++||+++-
T Consensus 310 Di~~fH---~i~wPa~L~a~g~~--~~~p~~i~~~g~l~~---------------------------------------- 344 (801)
T PLN02610 310 DNVPFH---TVMFPSTLLGTGEN--WTMMKTISVTEYLNY---------------------------------------- 344 (801)
T ss_pred ecchhH---HHHHHHHHHhCCCC--cCCCCEEEeccCEec----------------------------------------
Confidence 999999 56898888776630 013478888887642
Q ss_pred CceeeccCcchhhcccccccccCCCCCCChhhHHhh-hCchhhhhhhhhcCCCCCCCCCChhhHHHHH---------HHH
Q 002217 691 DFFVMKDNPNIRLIARAHKMSKSRGNVVNPDDVVTE-YGADSLRLYEMFMGPFRDSKTWNTSGIEGVH---------RFL 760 (952)
Q Consensus 691 ~~~vl~~~~~~~v~~~g~KMSKSkGNvV~P~eii~~-YGaDalRl~ll~~~~~~~~~~~s~~~i~~~~---------r~l 760 (952)
+|+|||||+||+|+|.+++++ ||+|++||||++.++..+|.+|+++.+.... |++
T Consensus 345 ---------------eG~KMSKS~GNvV~p~~~i~~~yg~D~lRyyLl~~~p~~~D~dFs~~~f~~~~NsdL~n~lGNlv 409 (801)
T PLN02610 345 ---------------EGGKFSKSKGVGVFGNDAKDTNIPVEVWRYYLLTNRPEVSDTLFTWADLQAKLNSELLNNLGNFI 409 (801)
T ss_pred ---------------CCceecCcCCcccCHHHHHhccCCchHhHHHhhhcCCCCCCCcCCHHHHHHHHHHHHHHHHHHHH
Confidence 389999999999999999996 9999999999999999999999987776543 344
Q ss_pred HHHHHHHhccCCCCCCCCCCccCC-----CCCChHHHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHhcccc----
Q 002217 761 GRMWRLIVGSSLPDGTFKGGTVVN-----DEEPTLEQLCTLHKCIAKVTEEIEGTRFNTGISAMMEFINAAYKWEK---- 831 (952)
Q Consensus 761 ~~l~~~~~~~~~~~~~~~~~~~~~-----~~~~d~~~l~~l~~~i~~v~~~~e~~~f~~ai~~l~~f~~~~~~~~~---- 831 (952)
+|++.++.... +++..+.++. ....|.+++++++++++++.++|++|+|+.|+..+|+|.+.+|++.+
T Consensus 410 ~R~~~~i~~~~---~k~~~g~vp~~~~~~~~~~d~~Ll~~~~~~i~~v~~~me~~~~~~Al~~I~~l~~~~NkYIe~~kP 486 (801)
T PLN02610 410 NRVLSFIAKPP---GAGYGSVIPDAPGAESHPLTKKLAEKVGKLVEQYVEAMEKVKLKQGLKTAMSISSEGNAYLQESQF 486 (801)
T ss_pred HHHHHHHHhhh---hhccCCcCCCccccccchhhHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHhcCc
Confidence 55555443100 0111221111 12346788999999999999999999999999999999887775311
Q ss_pred ---------h-------hHHHHHHHHHHhCCcchhHHHHHHHHcCCC
Q 002217 832 ---------H-------PRKIIEPFILLLAPYAPHMSEELWFRLGHS 862 (952)
Q Consensus 832 ---------~-------~~~vL~~l~~LLaPf~P~iaEElw~~L~~~ 862 (952)
. +.++++.+++||+||||++||+||++||..
T Consensus 487 W~L~k~d~~~l~~vl~~~le~lr~la~LL~PfmP~~aeeI~~~Lg~~ 533 (801)
T PLN02610 487 WKLYKEDKPSCAIVVKTSVGLVYLLACLLEPFMPSFSKEVLKQLNLP 533 (801)
T ss_pred hhhhCCCHHHHHHHHHHHHHHHHHHHHHHhCcccHHHHHHHHHhCCC
Confidence 0 125789999999999999999999999853
No 37
>COG0143 MetG Methionyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=6.4e-67 Score=604.84 Aligned_cols=445 Identities=26% Similarity=0.443 Sum_probs=359.0
Q ss_pred CCCcEEEEcCCCCCCCCCCCCchhHHHHHHHHHHHHHHHcCCcccccccccccChHHHHHHHHhCCCchHHHHHHHHHHH
Q 002217 92 SKPKFYVLDMFPYPSGAGLHVGHPLGYTATDILARLKRMQGYNVLHPMGWDAFGLPAEQYAIETGTHPKITTLRNINRFR 171 (952)
Q Consensus 92 ~k~kf~i~~~~Pypng~~lHiGH~~~~~~~Di~~Ry~r~~G~~V~~~~G~D~~Glpie~~a~~~g~~~~~~~~~~~~~~~ 171 (952)
.+++|+|+.++|||||. |||||+++++.+||++||+||+|++|+|++|+|+||+||+++|+++|++|+++++++.+.++
T Consensus 3 ~~~~~~VTtalpY~Ng~-~HlGH~~~~l~ADv~aRy~Rl~G~~v~fvtGtDeHGt~I~~~A~~~g~tP~el~d~~~~~~~ 81 (558)
T COG0143 3 MMKKILVTTALPYPNGP-PHLGHLYTYLAADVYARYLRLRGYEVFFLTGTDEHGTKIELKAEKEGITPQELVDKNHEEFK 81 (558)
T ss_pred CCCcEEEecCCCCCCCC-cchhhHHHHHHHHHHHHHHHhcCCeEEEEeccCCCCCHHHHHHHHcCCCHHHHHHHHHHHHH
Confidence 35789999999999998 99999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHcCCccccCCcccCCChhHHHHHHHHHHHHHHCCceeeeccccccCCCCCcccCchhh------------------
Q 002217 172 TQLKSLGFSYDWNREISTIEPAYYKWTQWIFLQLLKRGLAYQAEVPVNWCPALGTVLANEEV------------------ 233 (952)
Q Consensus 172 ~~l~~lgi~~Dw~~~~~T~~~~~~~~v~~~f~~L~~kGliy~~~~~v~wc~~~~t~ls~~Ev------------------ 233 (952)
+.++.|+|++| .+.+|+++.|.+.||++|.+|+++|+||.+..++.||+.|++.|.+.+|
T Consensus 82 ~~~~~l~IsfD--~F~rTt~~~h~~~vq~~f~~L~~~G~I~~~~~~~~Yc~~~e~fl~dr~v~g~cp~cg~~~arGD~Ce 159 (558)
T COG0143 82 ELFKALNISFD--NFIRTTSPEHKELVQEFFLKLYENGDIYLREYEGLYCVSCERFLPDRYVEGTCPKCGGEDARGDQCE 159 (558)
T ss_pred HHHHHhCCccc--ccccCCCHHHHHHHHHHHHHHHHCCCEeccceeeeEcccccccccchheeccCCCcCccccCcchhh
Confidence 99999999999 9999999999999999999999999999999999999888777755444
Q ss_pred -----------ccCccccCCCCeEEeeccccchhhhhhhhHhhccCCCCC---CchHHHHHHHhhhccCCCceEEEEEec
Q 002217 234 -----------VDGVSERGGHPVIRKPMRQWMLKITEYADRLLDDLDDLD---WPESVKEMQRNWIGRSEGAEMDFRVLD 299 (952)
Q Consensus 234 -----------~~~~~~~~~~~~~~~~~~~~~~~i~~y~~~l~~~l~~~~---~p~~~~~~~~~~i~~s~~~~v~f~~~~ 299 (952)
++++|++||.+.+.|++++|||++++|++.|++++++.. ||++++++..+||
T Consensus 160 ~Cg~~~~P~~l~~p~~~i~g~~p~~r~~~hyFf~L~~~~~~L~~~~~~~~~~~~p~~~~ne~~~~i-------------- 225 (558)
T COG0143 160 NCGRTLDPTELINPVCVISGATPEVREEEHYFFRLSKFQDKLLEWYESNPDFIWPANRRNEVLNFL-------------- 225 (558)
T ss_pred hccCcCCchhcCCCeeEeeCCCcccccceeEEEEHHHhHHHHHHHHHhCccccCChHHHHHHHHHH--------------
Confidence 456677777778888899999999999999998877542 5555554443332
Q ss_pred CCCCccCcEEEEecCCcchhccccEEEECCCCccchhhccccchHHHHHHHHHHhccchhhHhhhhhcccccccceEEec
Q 002217 300 SDGQERDIKITVYTTRPDTIFGATYLVVAPEHPLLSSLVSTTQSQNIEEYKNLASRKSDLERTELQKEKTGVFSGCYARN 379 (952)
Q Consensus 300 ~~~~~~~~~i~i~TT~P~Tl~g~~~v~v~p~~~y~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~ 379 (952)
T Consensus 226 -------------------------------------------------------------------------------- 225 (558)
T COG0143 226 -------------------------------------------------------------------------------- 225 (558)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CCCCCcccEEecCcccCCCCCCceEecCCCChhhHHHHHHcCCceeeeecCCCCCCccccccccccceEEcccCcccccc
Q 002217 380 PASGEAIPIWVADYVLGSYGTGAIMAVPAHDTRDHEFALKFDISIHSVVMPDDESSSQSEKAYTGEGLIVNSSNLISGLD 459 (952)
Q Consensus 380 P~~~~~~pv~~~~~V~~~~GTG~V~~~Pah~~~D~~~~~~~~L~i~~vv~~~~~~~~~~~~~y~~~g~l~~~~~~~~~~~ 459 (952)
T Consensus 226 -------------------------------------------------------------------------------- 225 (558)
T COG0143 226 -------------------------------------------------------------------------------- 225 (558)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred cCCCCHHHHHHHHHHHHHHcCCCcceecccCCceeecc-cCCCCcccCceEeCCCCceeecCCCCcCCCCCcccccCCCC
Q 002217 460 INGLSCQEATSKVIEWAEKTGNGKKKVNYKLRDWLFAR-QRYWGEPIPVVFLDGTGETVPLHEAELPLTLPELDDFTPTG 538 (952)
Q Consensus 460 ~~gl~~~~a~~~ii~~l~~~~~~~~~~~~~l~DW~ISR-QR~WG~PIPv~~~~~~~~~~~~~~~~l~v~lp~~~~~~~~G 538 (952)
+. -|+||+||| .-.||+|+| ...+
T Consensus 226 -----------------~~----------GL~d~~IsR~~~~WGipvP----~~p~------------------------ 250 (558)
T COG0143 226 -----------------KE----------GLKDLSITRTDLDWGIPVP----GDPG------------------------ 250 (558)
T ss_pred -----------------Hc----------cCcccceecCCCCCCccCC----CCCC------------------------
Confidence 11 178999999 889999999 2211
Q ss_pred CCCCCCccccccccccccCCCCCccccCCCccccccccchhhe-ecCCC--CchhHhhhhhhhcCCCce----eEecCch
Q 002217 539 TGEPPLSKAVSWVQTTEHSSGKPARRETSTMPQWAGSCWYYLR-FMDPK--NSKELVDKTKERYWSPVD----VYVGGAE 611 (952)
Q Consensus 539 ~~~~~l~~~~~w~~~~~~~~g~~~~re~d~lD~WfdSswy~~~-~~~p~--~~~~~~~~~~~~~w~PvD----lyv~G~D 611 (952)
-|+.||||.-.-|+. ..... .... +. +.|+|.| +++-|+|
T Consensus 251 ----------------------------kv~YVWfDAligYisa~~~~~~~~~~~----~~-~~~W~~~~~e~vhfIGKD 297 (558)
T COG0143 251 ----------------------------KVIYVWFDALIGYISALGELAEIGDDE----DF-KKFWPADDTELVHFIGKD 297 (558)
T ss_pred ----------------------------CEEEEeeccHHHHHHHhcchhccCChH----HH-HhhCCCCCceEEEEeccc
Confidence 256799998644443 22221 1111 12 3355998 9999999
Q ss_pred hhHHHHHHHHHHHHHHHHhcCcCCCCcchhhhhhceeccccceeEEecCCCccccCCCCCcccccccccCccccccccCC
Q 002217 612 HAVLHLLYARFWHKVLYDIGVVSTKEPFKCVINQGIILGEMQYMVCKDVDGSYISADSTDTLGEYEQESIPEEKVMKSGD 691 (952)
Q Consensus 612 ~~~~HLly~Rfw~~~L~~~~~~~~~~PFk~l~~~G~vl~~~~y~~~~d~~g~~~~~~~~~~~~~~~~~~~~~~~v~~~~~ 691 (952)
++.+| +.||..+|+..|.- ..+++++||+++-
T Consensus 298 ii~FH---av~wPamL~~~~~~----lP~~i~ahg~l~~----------------------------------------- 329 (558)
T COG0143 298 IIRFH---AVYWPAMLMAAGLP----LPTRIFAHGFLTL----------------------------------------- 329 (558)
T ss_pred cCcch---hhHHHHHHHhCCCC----CCCEEEeeeeEEE-----------------------------------------
Confidence 99999 67899999887752 3478888887752
Q ss_pred ceeeccCcchhhcccccccccCCCCCCChhhHHhhhCchhhhhhhhhcCCCCCCCCCChhhHHHHH---------HHHHH
Q 002217 692 FFVMKDNPNIRLIARAHKMSKSRGNVVNPDDVVTEYGADSLRLYEMFMGPFRDSKTWNTSGIEGVH---------RFLGR 762 (952)
Q Consensus 692 ~~vl~~~~~~~v~~~g~KMSKSkGNvV~P~eii~~YGaDalRl~ll~~~~~~~~~~~s~~~i~~~~---------r~l~~ 762 (952)
+|+|||||+||+|+|.+++++||+|++||||+...|..+|.+|+++.+.... |+++|
T Consensus 330 --------------~G~KmSKSrG~~V~~~~~~~~~~~D~lRYyL~~~~p~~~D~dFs~~~f~~rvN~dL~n~lgNl~~R 395 (558)
T COG0143 330 --------------EGQKMSKSRGNVVDPDELLEQYGVDALRYYLARELPEGSDGDFSWEDFVERVNADLANKLGNLANR 395 (558)
T ss_pred --------------CCccccccCCcEEeHHHHHHHcCchHhHHHHHHhCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 3899999999999999999999999999999999999999999988876543 45555
Q ss_pred HHHHHhccCCCCCCCCCCccCCCCCChHHHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHhcccc-----------
Q 002217 763 MWRLIVGSSLPDGTFKGGTVVNDEEPTLEQLCTLHKCIAKVTEEIEGTRFNTGISAMMEFINAAYKWEK----------- 831 (952)
Q Consensus 763 l~~~~~~~~~~~~~~~~~~~~~~~~~d~~~l~~l~~~i~~v~~~~e~~~f~~ai~~l~~f~~~~~~~~~----------- 831 (952)
+..|+.... ++.......... ..|.+++....++.+.+.++|+.++|++|+..+|+++...|+|.+
T Consensus 396 ~~~fi~k~~--~g~vp~~~~~~~-~~d~~~~~~~~~~~~~~~~~~e~~~~~~Al~~i~~l~~~~N~Yi~~~~PW~l~k~~ 472 (558)
T COG0143 396 TLGFINKYF--DGVVPAAGAPDL-EEDEELLALAREALEAVAEAMEKYEFRKALEEIMALASRANKYIDEQAPWKLAKED 472 (558)
T ss_pred HHHHHHhcc--CCcCCccccccc-hhhHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHhhcCCCchhhccC
Confidence 555552211 111111100111 356778899999999999999999999999999999998887421
Q ss_pred ---h-------hHHHHHHHHHHhCCcchhHHHHHHHHcCCCCCcc
Q 002217 832 ---H-------PRKIIEPFILLLAPYAPHMSEELWFRLGHSNSLA 866 (952)
Q Consensus 832 ---~-------~~~vL~~l~~LLaPf~P~iaEElw~~L~~~~sV~ 866 (952)
. ..++++.++.||+||||.+|++||++|+...+..
T Consensus 473 ~~~~~~~vl~~~~~~~r~la~ll~P~mP~~a~ki~~~L~~~~~~~ 517 (558)
T COG0143 473 KRERLATVLYLALELVRVLAILLYPFMPETAEKIWDQLGLEEDAR 517 (558)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHhcCcCcchHHHHHHHhCCccccc
Confidence 0 1267889999999999999999999999765544
No 38
>KOG0437 consensus Leucyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=2.2e-67 Score=589.81 Aligned_cols=666 Identities=24% Similarity=0.387 Sum_probs=462.5
Q ss_pred ChhhhhHHHHHHHHHcCCCCCCC--CCCCCCCcEEEEcCCCCCCCCCCCCchhHHHHHHHHHHHHHHHcCCccccccccc
Q 002217 65 PFHEIEPKWQSYWENNRTFRTPD--EIDTSKPKFYVLDMFPYPSGAGLHVGHPLGYTATDILARLKRMQGYNVLHPMGWD 142 (952)
Q Consensus 65 ~~~~iE~k~~~~W~~~~~f~~~~--~~~~~k~kf~i~~~~Pypng~~lHiGH~~~~~~~Di~~Ry~r~~G~~V~~~~G~D 142 (952)
.+.+||+++|+.|+++++|+.+. +..+.++||+++-+.||.||. ||+||+++..-.|...-|+||+|++|+||+|++
T Consensus 13 ~L~eiEk~~q~~W~~e~~fevda~~el~~~~~Kff~tfpyPYMNG~-LHlGH~FslSK~eFa~~y~rL~Gk~vLfPfgFH 91 (1080)
T KOG0437|consen 13 SLLEIEKKYQKKWDTEKVFEVDAPNELQKSKPKFFVTFPYPYMNGR-LHLGHAFSLSKVEFASGYERLQGKNVLFPFGFH 91 (1080)
T ss_pred HHHHHHHHHHHhhhhhhheeccCchhcccccCceeEeccccccCce-eeccceeehhhhHHHHHHHHhcCceEEeecccc
Confidence 45789999999999999998764 456789999999999999998 999999999999999999999999999999999
Q ss_pred ccChHHHHHHHHh-------CCCc------------------------------hHH------------------HHHHH
Q 002217 143 AFGLPAEQYAIET-------GTHP------------------------------KIT------------------TLRNI 167 (952)
Q Consensus 143 ~~Glpie~~a~~~-------g~~~------------------------------~~~------------------~~~~~ 167 (952)
|.|+||...|.++ |.+| +.. .++-|
T Consensus 92 CTGMPI~A~AdKLkrEie~fG~ppdf~~e~eeEv~eev~~~~~~~~~k~kgKKsk~aaK~g~~kYQw~IM~slGl~deEI 171 (1080)
T KOG0437|consen 92 CTGMPIKASADKLKREIELFGCPPDFPEEEEEEVEEEVKTEDAIEDVKFKGKKSKAAAKTGGQKYQWEIMESLGLPDEEI 171 (1080)
T ss_pred cCCCccHHhHHHHHHHHHHhCCCCCCchhhhhhhhhcccccccccccccccchhhHHHhhcccchhHHHHHHcCCCHHHh
Confidence 9999997766542 2221 000 01111
Q ss_pred HHH--------------HHHHHHcCCccccCCcccCCC--hhHHHHHHHHHHHHHHCCceeeeccccccCCCCCcccCch
Q 002217 168 NRF--------------RTQLKSLGFSYDWNREISTIE--PAYYKWTQWIFLQLLKRGLAYQAEVPVNWCPALGTVLANE 231 (952)
Q Consensus 168 ~~~--------------~~~l~~lgi~~Dw~~~~~T~~--~~~~~~v~~~f~~L~~kGliy~~~~~v~wc~~~~t~ls~~ 231 (952)
..| .++++++|..+||+|.+.|+| |.|..+|+|+|.+|.+.|.|..|++...|||.+++++.|+
T Consensus 172 ~~F~d~~~WL~yFPpLc~~dlk~~gl~iDWRRSFITTDvNpYyDsFVRWQ~n~L~~~gkI~fgkRyTIyspkDgQpCmDH 251 (1080)
T KOG0437|consen 172 KKFADPKHWLYYFPPLCERDLKRFGLGIDWRRSFITTDVNPYYDSFVRWQFNKLKEAGKIKFGKRYTIYSPKDGQPCMDH 251 (1080)
T ss_pred hcccChhHHHHhCChHHHHHHHHhCCCcceeeeeeecccchhHHHHHHHHHHHHHhcCCcccCcceeeecCCCCCccccc
Confidence 111 579999999999999999987 8899999999999999999999999999999999999999
Q ss_pred hhccCccccCCCCeEEeeccccchhhhhhhhHhhccCCCCCCchHHHHHHHhhhccCCCceEEEEEecC-----CC-Ccc
Q 002217 232 EVVDGVSERGGHPVIRKPMRQWMLKITEYADRLLDDLDDLDWPESVKEMQRNWIGRSEGAEMDFRVLDS-----DG-QER 305 (952)
Q Consensus 232 Ev~~~~~~~~~~~~~~~~~~~~~~~i~~y~~~l~~~l~~~~~p~~~~~~~~~~i~~s~~~~v~f~~~~~-----~~-~~~ 305 (952)
+...|... .|.+.. -++.++.+. ++ .+.
T Consensus 252 DR~sGEgV---~Pqeyt-------------------------------------------liKle~le~~p~~l~~~~~~ 285 (1080)
T KOG0437|consen 252 DRASGEGV---GPQEYT-------------------------------------------LIKLEVLEPFPKALSSLKDL 285 (1080)
T ss_pred ccccCCCC---CcceEE-------------------------------------------EEEEEecccchhhccccccc
Confidence 98755221 222111 122222211 00 123
Q ss_pred CcEEEEecCCcchhccccEEEECCCCccchhhcccc--------chHHHHHHHHHHhccchhhHhhhhhcccccccceEE
Q 002217 306 DIKITVYTTRPDTIFGATYLVVAPEHPLLSSLVSTT--------QSQNIEEYKNLASRKSDLERTELQKEKTGVFSGCYA 377 (952)
Q Consensus 306 ~~~i~i~TT~P~Tl~g~~~v~v~p~~~y~~~~~~~~--------~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~l~g~~~ 377 (952)
+.+++.+|.||+|++|.+..+|+|+..|.......+ .....-.|+......+... .+....|..+.|..+
T Consensus 286 ~v~lvAaTLRpetmyGQTnc~V~p~~~y~~fe~~~~~e~fi~t~raa~NmsyQ~~tk~~g~~~--~~~~i~G~~~iGa~l 363 (1080)
T KOG0437|consen 286 RVYLVAATLRPETMYGQTNCYVGPDIKYGGFEACNETEVFIATERAARNMSYQKLTKERGVVS--CLVTITGYDLIGAPL 363 (1080)
T ss_pred eeeeeehhcCCccccCccceEEcCCccEEeEEecCCceEEEeehHHHhhcchhhccccCCccc--ceeeecchhhcCCcc
Confidence 479999999999999999999999999865443321 1122234554433222211 122344557888888
Q ss_pred ecCCCC-CcccEEecCcccCCCCCCceEecCCCChhhHHHHHH-------cCCc-------eeeeecCCC-CCCc-----
Q 002217 378 RNPASG-EAIPIWVADYVLGSYGTGAIMAVPAHDTRDHEFALK-------FDIS-------IHSVVMPDD-ESSS----- 436 (952)
Q Consensus 378 ~~P~~~-~~~pv~~~~~V~~~~GTG~V~~~Pah~~~D~~~~~~-------~~L~-------i~~vv~~~~-~~~~----- 436 (952)
..|++- ..+-+++...|..+.|||+|.+||+..+|||...+. |||. ++.+|.-.+ |...
T Consensus 364 ~aPlsv~~~vy~LPMlTi~~~KGTGvVtsVpsdsPDDf~al~dL~kK~~lYg~~~ew~~~E~vPii~~~~fGdl~ae~vc 443 (1080)
T KOG0437|consen 364 SAPLSVYERVYALPMLTILATKGTGVVTSVPSDSPDDFAALQDLKKKPELYGLKPEWVLFEIVPIIRIPGFGDLAAEVVC 443 (1080)
T ss_pred cCcchhhheeeeccceeeeccCCceeEEeCCCCCchhhhHHHhhhhcccccCCChhhccccccceeeccccchhhHHHHH
Confidence 889864 567788889999999999999999999999987642 4442 222222110 1000
Q ss_pred ----------------cccccccc---cceEEcccCcccccccCCCCHHHHHHHHHHHHHHcCCCcc------e------
Q 002217 437 ----------------QSEKAYTG---EGLIVNSSNLISGLDINGLSCQEATSKVIEWAEKTGNGKK------K------ 485 (952)
Q Consensus 437 ----------------~~~~~y~~---~g~l~~~~~~~~~~~~~gl~~~~a~~~ii~~l~~~~~~~~------~------ 485 (952)
.....|.. +|+|+-. .+.|.+++++...|...|.+.|..-. +
T Consensus 444 ~~lKiqs~~dk~klaeaK~~~y~e~fy~g~mlig-------~y~G~KVe~~K~~i~~~li~~g~a~~y~EPEkqVmSRSG 516 (1080)
T KOG0437|consen 444 DELKIQSPNDKKKLAEAKKLAYLEGFYEGTMLIG-------KYKGEKVEDAKPKIKTDLIETGDALKYNEPEKQVMSRSG 516 (1080)
T ss_pred HHHhccCchhHHHHHHhhHHHHHHhhhcceEEEe-------ccccccHHhhhhHHHHHHHhcccceeecCcchhhhccCC
Confidence 01112221 4666543 37888888888888877777775321 0
Q ss_pred ------------ecc--------------------------------cCCceeecccCCCCcccCceEeCCCCceeecCC
Q 002217 486 ------------VNY--------------------------------KLRDWLFARQRYWGEPIPVVFLDGTGETVPLHE 521 (952)
Q Consensus 486 ------------~~~--------------------------------~l~DW~ISRQR~WG~PIPv~~~~~~~~~~~~~~ 521 (952)
++| ||..|.+||....||.||+ |+.--+.++++
T Consensus 517 deCiVAL~DQWYldYgE~eWKk~a~~cLe~l~~f~dEtR~~fE~tLdWL~~wacsRsyGLGTrlPW---D~qyLvESLSD 593 (1080)
T KOG0437|consen 517 DECIVALCDQWYLDYGEAEWKKQAKECLENLNTFSDETRNGFEDTLDWLGQWACSRSYGLGTRLPW---DEQYLVESLSD 593 (1080)
T ss_pred CceEEEeccchhhhcCcHHHHHHHHHHHhhhhccCHHHHHHHHHHHHHHHhhhhhccccCCCCCCC---cHHHHHHhcch
Confidence 111 5789999999999999999 55556678888
Q ss_pred CCcCCCCCccccc---CCCCCCCCCCccccccccccccCCCCCccccCCCccccccccchhheec--CCCCc---hhHhh
Q 002217 522 AELPLTLPELDDF---TPTGTGEPPLSKAVSWVQTTEHSSGKPARRETSTMPQWAGSCWYYLRFM--DPKNS---KELVD 593 (952)
Q Consensus 522 ~~l~v~lp~~~~~---~~~G~~~~~l~~~~~w~~~~~~~~g~~~~re~d~lD~WfdSswy~~~~~--~p~~~---~~~~~ 593 (952)
+.+++....+..+ ...|....|| |... |+--|..|.|.-.. +|.++ .+.++
T Consensus 594 STIYmAyYTvaHll~~d~~g~~~~pl--------------gi~~-------~QMtdeVwdYvF~~~~~~k~t~i~~e~L~ 652 (1080)
T KOG0437|consen 594 STIYMAYYTVAHLLHRDLYGKVEGPL--------------GIKP-------DQMTDEVWDYVFLNEPYPKNTAIPEEALS 652 (1080)
T ss_pred hHHHHHHHHHHHHHHHhhccCCcccC--------------CCCh-------hhcCHHHHHHhhccCCCCcCCCccHHHHH
Confidence 8887643322111 1123322222 1111 12234456665333 33333 22332
Q ss_pred h--hhhhcCCCceeEecCchhhHHHHHHHHHHHHHHHHhcCcCCCCcchhhhhhceeccccceeEEecCCCccccCCCCC
Q 002217 594 K--TKERYWSPVDVYVGGAEHAVLHLLYARFWHKVLYDIGVVSTKEPFKCVINQGIILGEMQYMVCKDVDGSYISADSTD 671 (952)
Q Consensus 594 ~--~~~~~w~PvDlyv~G~D~~~~HLly~Rfw~~~L~~~~~~~~~~PFk~l~~~G~vl~~~~y~~~~d~~g~~~~~~~~~ 671 (952)
+ ...+||||+|++++|+|.+.+||.|+.|.|.+|+.. +-|..||
T Consensus 653 ~lr~eF~Y~YPiDlrvsGKDLi~NHLtfflynHvAl~~~----------k~WPkgi------------------------ 698 (1080)
T KOG0437|consen 653 NLRREFEYFYPIDLRVSGKDLIPNHLTFFLYNHVALFPE----------KKWPKGI------------------------ 698 (1080)
T ss_pred HHHHhhhcccceeeeeccccccccceeEeeeehhhhccc----------ccCccce------------------------
Confidence 2 235899999999999999999999999999998762 2333442
Q ss_pred cccccccccCccccccccCCceeeccCcchhhcccccccccCCCCCCChhhHHhhhCchhhhhhhhhcCCCCCCCCCChh
Q 002217 672 TLGEYEQESIPEEKVMKSGDFFVMKDNPNIRLIARAHKMSKSRGNVVNPDDVVTEYGADSLRLYEMFMGPFRDSKTWNTS 751 (952)
Q Consensus 672 ~~~~~~~~~~~~~~v~~~~~~~vl~~~~~~~v~~~g~KMSKSkGNvV~P~eii~~YGaDalRl~ll~~~~~~~~~~~s~~ 751 (952)
+.||+++.+ ++|||||.||+.+.++.|++||||+.|+.|+.+|..-+|.||.+.
T Consensus 699 -----------------raNGHLmLN---------sEKMSKSTGNfmTL~qaieKFgad~tRlalAdaGD~veDANF~ea 752 (1080)
T KOG0437|consen 699 -----------------RANGHLMLN---------SEKMSKSTGNFMTLEQAIEKFGADGTRLALADAGDGVEDANFVEA 752 (1080)
T ss_pred -----------------eeCceEEec---------chhhccccCCeeeHHHHHHHhCccceeeeeecccCCcccchhHHh
Confidence 225666654 799999999999999999999999999999999988888888765
Q ss_pred hHHHHHHHHHHHHHHH---hccCCCCCCCCCCccCCCCCChHHHHHHHHHHHHHHHHHHhcCChHHHHH-HHHHHHHHHh
Q 002217 752 GIEGVHRFLGRMWRLI---VGSSLPDGTFKGGTVVNDEEPTLEQLCTLHKCIAKVTEEIEGTRFNTGIS-AMMEFINAAY 827 (952)
Q Consensus 752 ~i~~~~r~l~~l~~~~---~~~~~~~~~~~~~~~~~~~~~d~~~l~~l~~~i~~v~~~~e~~~f~~ai~-~l~~f~~~~~ 827 (952)
....+ +-|+++.+ ....-.......+. .....|+-+.+++|.+++...++|+...|..|+. -+++|...-
T Consensus 753 ~AnAa---ILRLyt~~ew~eEm~~~~s~LrtGp--~~~FaDrvf~nemN~~i~~t~~aye~~~fk~aLK~Gfyd~qaAr- 826 (1080)
T KOG0437|consen 753 NANAA---ILRLYTYVEWIEEMCENRSSLRTGP--ASTFADRVFENEMNALIAKTERAYEDTLFKDALKYGFYDLQAAR- 826 (1080)
T ss_pred cccHH---HHHHHHHHHHHHHHHhhHHhhccCc--hhhHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHhhhHHHHHHH-
Confidence 54433 33444332 11000000111111 1124577778899999999999999999999996 566665432
Q ss_pred cccc----------hhHHHHHHHHHHhCCcchhHHHHHHHHcCCCCCccccCCCCCCcc
Q 002217 828 KWEK----------HPRKIIEPFILLLAPYAPHMSEELWFRLGHSNSLAYESFPKANPD 876 (952)
Q Consensus 828 ~~~~----------~~~~vL~~l~~LLaPf~P~iaEElw~~L~~~~sV~~~~WP~~~~~ 876 (952)
.||. .....+++.+.||+||+||+||.||+.+..++......||.+++.
T Consensus 827 D~Yrel~g~~mh~dLv~r~ietqtlLLaPi~Ph~aeyiw~~~~~~~~~v~~~wP~~s~~ 885 (1080)
T KOG0437|consen 827 DMYRELCGEGMHRDLVFRFIETQTLLLAPICPHLAEYIWRTVLKKNFSVNVGWPFVSPP 885 (1080)
T ss_pred HHHHHHhcccccHHHHHHHHHHHHHHHhccchHHHHHHHHHhccCCceeecCCCCCCCH
Confidence 2221 123567888999999999999999998876654445599988653
No 39
>cd00818 IleRS_core catalytic core domain of isoleucyl-tRNA synthetases. Isoleucine amino-acyl tRNA synthetases (IleRS) catalytic core domain . This class I enzyme is a monomer which aminoacylates the 2'-OH of the nucleotide at the 3' of the appropriate tRNA. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. It contains the characteristic class I HIGH and KMSKS motifs, which are involved in ATP binding. IleRS has an insertion in the core domain, which is subject to both deletions and rearrangements. This editing region hydrolyzes mischarged cognate tRNAs and thus prevents the incorporation of chemically similar amino acids.
Probab=100.00 E-value=4.8e-66 Score=578.95 Aligned_cols=318 Identities=36% Similarity=0.681 Sum_probs=267.0
Q ss_pred CcEEEEcCCCCCCCCCCCCchhHHHHHHHHHHHHHHHcCCcccccccccccChHHHHHHHHh-CCCc-------------
Q 002217 94 PKFYVLDMFPYPSGAGLHVGHPLGYTATDILARLKRMQGYNVLHPMGWDAFGLPAEQYAIET-GTHP------------- 159 (952)
Q Consensus 94 ~kf~i~~~~Pypng~~lHiGH~~~~~~~Di~~Ry~r~~G~~V~~~~G~D~~Glpie~~a~~~-g~~~------------- 159 (952)
++|+|+++|||+||. +||||+++++++|+++||+||+|++|.+++||||||+|||.+|++. |+++
T Consensus 1 ~~f~i~~~pP~vnG~-lHiGHa~~~~~~Dvl~Ry~r~~G~~V~~~~g~D~hG~~ie~ka~k~lg~~~~~~~~~~~~~~~~ 79 (338)
T cd00818 1 PEFVFHDGPPYANGL-PHYGHALNKILKDIINRYKTMQGYYVPRRPGWDCHGLPIELKVEKELGISGKKDIEKMGIAEFN 79 (338)
T ss_pred CCeEEecCCCCCCCC-chHHHHHHHHHHHHHHHHHHhcCCccCCcCCcCCCCchhHHHHHHHhCCCCCcchhhcCHHHHH
Confidence 479999999999998 9999999999999999999999999999999999999999999886 7764
Q ss_pred ---hHHHHHHHHHHHHHHHHcCCccccCCcccCCChhHHHHHHHHHHHHHHCCceeeeccccccCCCCCcccCchhhccC
Q 002217 160 ---KITTLRNINRFRTQLKSLGFSYDWNREISTIEPAYYKWTQWIFLQLLKRGLAYQAEVPVNWCPALGTVLANEEVVDG 236 (952)
Q Consensus 160 ---~~~~~~~~~~~~~~l~~lgi~~Dw~~~~~T~~~~~~~~v~~~f~~L~~kGliy~~~~~v~wc~~~~t~ls~~Ev~~~ 236 (952)
+++++++++.|++++++||++.||++++.|++++|.+.++++|.+|+++|+||++.++|+|
T Consensus 80 ~~~~~~~~~~~~~~~~~~~~lgi~~~~~~~~~T~~~~~~~~v~~~f~~L~~~G~iY~~~~~v~~---------------- 143 (338)
T cd00818 80 AKCREFALRYVDEQEEQFQRLGVWVDWENPYKTMDPEYMESVWWVFKQLHEKGLLYRGYKVVPW---------------- 143 (338)
T ss_pred HHHHHHHHHHHHHHHHHHHHhCceecCCCCeECCCHHHHHHHHHHHHHHHHCCCEeccCCeeee----------------
Confidence 6899999999999999999999999999999999999999999999999999999999999
Q ss_pred ccccCCCCeEEeeccccchhhhhhhhHhhccCCCCCC-chHHHHHHHhhhccCCCceEEEEEecCCCCccCcEEEEecCC
Q 002217 237 VSERGGHPVIRKPMRQWMLKITEYADRLLDDLDDLDW-PESVKEMQRNWIGRSEGAEMDFRVLDSDGQERDIKITVYTTR 315 (952)
Q Consensus 237 ~~~~~~~~~~~~~~~~~~~~i~~y~~~l~~~l~~~~~-p~~~~~~~~~~i~~s~~~~v~f~~~~~~~~~~~~~i~i~TT~ 315 (952)
+++.++++||||+++++++.+++.+++.+| |+.+++.
T Consensus 144 -------~v~~~~~~qwf~~l~~~~~~l~~~~~~~~~~P~~~~~~----------------------------------- 181 (338)
T cd00818 144 -------PLIYRATPQWFIRVTKIKDRLLEANDKVNWIPEWVKNR----------------------------------- 181 (338)
T ss_pred -------EEEEEecCeEEEEcHHHHHHHHHHHhcCcEECHHHHHH-----------------------------------
Confidence 678899999999999999888776543322 3222221
Q ss_pred cchhccccEEEECCCCccchhhccccchHHHHHHHHHHhccchhhHhhhhhcccccccceEEecCCCCCcccEEecCccc
Q 002217 316 PDTIFGATYLVVAPEHPLLSSLVSTTQSQNIEEYKNLASRKSDLERTELQKEKTGVFSGCYARNPASGEAIPIWVADYVL 395 (952)
Q Consensus 316 P~Tl~g~~~v~v~p~~~y~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~P~~~~~~pv~~~~~V~ 395 (952)
T Consensus 182 -------------------------------------------------------------------------------- 181 (338)
T cd00818 182 -------------------------------------------------------------------------------- 181 (338)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CCCCCCceEecCCCChhhHHHHHHcCCceeeeecCCCCCCccccccccccceEEcccCcccccccCCCCHHHHHHHHHHH
Q 002217 396 GSYGTGAIMAVPAHDTRDHEFALKFDISIHSVVMPDDESSSQSEKAYTGEGLIVNSSNLISGLDINGLSCQEATSKVIEW 475 (952)
Q Consensus 396 ~~~GTG~V~~~Pah~~~D~~~~~~~~L~i~~vv~~~~~~~~~~~~~y~~~g~l~~~~~~~~~~~~~gl~~~~a~~~ii~~ 475 (952)
+.+|
T Consensus 182 ----------------------------------------------------------------------------~~~~ 185 (338)
T cd00818 182 ----------------------------------------------------------------------------FGNW 185 (338)
T ss_pred ----------------------------------------------------------------------------HHHH
Confidence 2223
Q ss_pred HHHcCCCcceecccCCceeecccCCCCcccCceEeCCCCceeecCCCCcCCCCCcccccCCCCCCCCCCccccccccccc
Q 002217 476 AEKTGNGKKKVNYKLRDWLFARQRYWGEPIPVVFLDGTGETVPLHEAELPLTLPELDDFTPTGTGEPPLSKAVSWVQTTE 555 (952)
Q Consensus 476 l~~~~~~~~~~~~~l~DW~ISRQR~WG~PIPv~~~~~~~~~~~~~~~~l~v~lp~~~~~~~~G~~~~~l~~~~~w~~~~~ 555 (952)
+. +++||||||||+||+|||+|+|++||.+++
T Consensus 186 l~-----------~l~dw~iSR~~~WGip~P~~~~~~~~~~~~------------------------------------- 217 (338)
T cd00818 186 LE-----------NRRDWCISRQRYWGTPIPVWYCEDCGEVLV------------------------------------- 217 (338)
T ss_pred Hh-----------cchhcceeeecccCceeeEEEecCCCeEEE-------------------------------------
Confidence 31 278999999999999999999977653321
Q ss_pred cCCCCCccccCCCcccccccc-chhheecCCCCchhHhhhhhhhcCCCceeEecCchhhHHHHHHHHHHHHHHHHhc-Cc
Q 002217 556 HSSGKPARRETSTMPQWAGSC-WYYLRFMDPKNSKELVDKTKERYWSPVDVYVGGAEHAVLHLLYARFWHKVLYDIG-VV 633 (952)
Q Consensus 556 ~~~g~~~~re~d~lD~WfdSs-wy~~~~~~p~~~~~~~~~~~~~~w~PvDlyv~G~D~~~~HLly~Rfw~~~L~~~~-~~ 633 (952)
.|+++|+||||||+ +|+....+|.+..+ .++|+|+|+++.|+|++ |+|++.++..+ ++
T Consensus 218 -------~~~~~v~~vWfda~~~~~~~~~~~~~~~~------~~~~~p~d~~~~GkDii-------~~wf~~~~~~~~~~ 277 (338)
T cd00818 218 -------RRVPDVLDVWFDSGSMPYAQLHYPFENED------FEELFPADFILEGSDQT-------RGWFYSLLLLSTAL 277 (338)
T ss_pred -------ecCCceEEEEEeCCCCHHHHcCCCCcchh------hhccCCCeEEeecchHH-------hHHHHHHHHHHHHh
Confidence 35789999999996 66655455544321 25678999999999997 66754443333 34
Q ss_pred CCCCcchhhhhhceeccccceeEEecCCCccccCCCCCcccccccccCccccccccCCceeeccCcchhhcccccccccC
Q 002217 634 STKEPFKCVINQGIILGEMQYMVCKDVDGSYISADSTDTLGEYEQESIPEEKVMKSGDFFVMKDNPNIRLIARAHKMSKS 713 (952)
Q Consensus 634 ~~~~PFk~l~~~G~vl~~~~y~~~~d~~g~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~vl~~~~~~~v~~~g~KMSKS 713 (952)
.+..||+++++||++++. +|+|||||
T Consensus 278 ~~~~p~~~~~~hg~~~~~------------------------------------------------------~g~KmSKS 303 (338)
T cd00818 278 FGKAPYKNVIVHGFVLDE------------------------------------------------------DGRKMSKS 303 (338)
T ss_pred cCCCccceEEEEeeEECC------------------------------------------------------CCCCCCCC
Confidence 557899999999998743 37999999
Q ss_pred CCCCCChhhHHhhhCchhhhhhhhhcCCCCCCCCC
Q 002217 714 RGNVVNPDDVVTEYGADSLRLYEMFMGPFRDSKTW 748 (952)
Q Consensus 714 kGNvV~P~eii~~YGaDalRl~ll~~~~~~~~~~~ 748 (952)
+||+|+|.+++++||+|++|||+++.++..+|..|
T Consensus 304 ~gn~i~~~~~~~~~~~D~~R~~l~~~~~~~~d~~~ 338 (338)
T cd00818 304 LGNYVDPQEVVDKYGADALRLWVASSDVYAEDLRF 338 (338)
T ss_pred CCCcCCHHHHHHHcCcHHHHHHHHhCCCccCCCCC
Confidence 99999999999999999999999998888887654
No 40
>cd00812 LeuRS_core catalytic core domain of leucyl-tRNA synthetases. Leucyl tRNA synthetase (LeuRS) catalytic core domain. This class I enzyme is a monomer which aminoacylates the 2'-OH of the nucleotide at the 3' of the appropriate tRNA. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. It contains the characteristic class I HIGH and KMSKS motifs, which are involved in ATP binding. In Aquifex aeolicus, the gene encoding LeuRS is split in two, just before the KMSKS motif. Consequently, LeuRS is a heterodimer, which likely superimposes with the LeuRS monomer found in most other organisms. LeuRS has an insertion in the core domain, which is subject to both deletions and rearrangements and thus differs between prokaryotic LeuRS and archaeal/eukaryotic LeuRS. This editing region hydrolyzes mischarged cognate tRNAs and thus prevents the incorporation of chemically similar amino acids.
Probab=100.00 E-value=2.5e-58 Score=512.21 Aligned_cols=304 Identities=57% Similarity=1.060 Sum_probs=261.3
Q ss_pred cEEEEcCCCCCCCCCCCCchhHHHHHHHHHHHHHHHcCCcccccccccccChHHHHHHHHhCCCchHHHHHHHHHHHHHH
Q 002217 95 KFYVLDMFPYPSGAGLHVGHPLGYTATDILARLKRMQGYNVLHPMGWDAFGLPAEQYAIETGTHPKITTLRNINRFRTQL 174 (952)
Q Consensus 95 kf~i~~~~Pypng~~lHiGH~~~~~~~Di~~Ry~r~~G~~V~~~~G~D~~Glpie~~a~~~g~~~~~~~~~~~~~~~~~l 174 (952)
||+|+.+||||||. +||||+++++++|+++||+||+|++|.+++|+|+||+||+.+|++.|.+|+++++++.+.|++++
T Consensus 1 k~~it~~~Py~ng~-~HiGH~~~~v~~Dv~~R~lr~~G~~V~~v~g~Dd~g~~i~~~a~~~g~~~~e~~~~~~~~~~~~~ 79 (314)
T cd00812 1 KFYILVMFPYPSGA-LHVGHVRTYTIGDIIARYKRMQGYNVLFPMGFDAFGLPAENAAIKIGRDPEDWTEYNIKKMKEQL 79 (314)
T ss_pred CeEEecCCCCCCCC-ccccchHHHHHHHHHHHHHHHcCCCcCCCCCcCCCCCHHHHHHHHcCCCHHHHHHHHHHHHHHHH
Confidence 68999999999998 99999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHcCCccccCCcccCCChhHHHHHHHHHHHHHHCCceeeeccccccCCCCCcccCchhhccCccccCCCCeEEeeccccc
Q 002217 175 KSLGFSYDWNREISTIEPAYYKWTQWIFLQLLKRGLAYQAEVPVNWCPALGTVLANEEVVDGVSERGGHPVIRKPMRQWM 254 (952)
Q Consensus 175 ~~lgi~~Dw~~~~~T~~~~~~~~v~~~f~~L~~kGliy~~~~~v~wc~~~~t~ls~~Ev~~~~~~~~~~~~~~~~~~~~~ 254 (952)
++||+++||++++.|++|+|.+.++++|.+|+++|+||++..+|+|| +.++|||
T Consensus 80 ~~lgi~~d~~~~~~t~~~~~~~~v~~~f~~L~~~G~iy~~~~~v~~~--------------------------~~~~~~f 133 (314)
T cd00812 80 KRMGFSYDWRREFTTCDPEYYKFTQWLFLKLYEKGLAYKKEAPVNWC--------------------------KLLDQWF 133 (314)
T ss_pred HHhccceecccccccCCHHHHHHHHHHHHHHHHCCCEEecCceeeee--------------------------CccceEE
Confidence 99999999999999999999999999999999999999999999999 4578999
Q ss_pred hhh--hhhhhHhhccCCCCC-CchHHHHHHHhhhccCCCceEEEEEecCCCCccCcEEEEecCCcchhccccEEEECCCC
Q 002217 255 LKI--TEYADRLLDDLDDLD-WPESVKEMQRNWIGRSEGAEMDFRVLDSDGQERDIKITVYTTRPDTIFGATYLVVAPEH 331 (952)
Q Consensus 255 ~~i--~~y~~~l~~~l~~~~-~p~~~~~~~~~~i~~s~~~~v~f~~~~~~~~~~~~~i~i~TT~P~Tl~g~~~v~v~p~~ 331 (952)
|++ ++|++.+.++++... ||+.+++..
T Consensus 134 ~~l~~~~~~~~l~~~l~~~~~~p~~~~~~~-------------------------------------------------- 163 (314)
T cd00812 134 LKYSETEWKEKLLKDLEKLDGWPEEVRAMQ-------------------------------------------------- 163 (314)
T ss_pred EEcCcHHHHHHHHHHHHhcCcCCHHHHHHH--------------------------------------------------
Confidence 999 999999887665433 443332211
Q ss_pred ccchhhccccchHHHHHHHHHHhccchhhHhhhhhcccccccceEEecCCCCCcccEEecCcccCCCCCCceEecCCCCh
Q 002217 332 PLLSSLVSTTQSQNIEEYKNLASRKSDLERTELQKEKTGVFSGCYARNPASGEAIPIWVADYVLGSYGTGAIMAVPAHDT 411 (952)
Q Consensus 332 ~y~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~P~~~~~~pv~~~~~V~~~~GTG~V~~~Pah~~ 411 (952)
T Consensus 164 -------------------------------------------------------------------------------- 163 (314)
T cd00812 164 -------------------------------------------------------------------------------- 163 (314)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred hhHHHHHHcCCceeeeecCCCCCCccccccccccceEEcccCcccccccCCCCHHHHHHHHHHHHHHcCCCcceecccCC
Q 002217 412 RDHEFALKFDISIHSVVMPDDESSSQSEKAYTGEGLIVNSSNLISGLDINGLSCQEATSKVIEWAEKTGNGKKKVNYKLR 491 (952)
Q Consensus 412 ~D~~~~~~~~L~i~~vv~~~~~~~~~~~~~y~~~g~l~~~~~~~~~~~~~gl~~~~a~~~ii~~l~~~~~~~~~~~~~l~ 491 (952)
.+|+.
T Consensus 164 -------------------------------------------------------------~~~l~-------------- 168 (314)
T cd00812 164 -------------------------------------------------------------ENWIG-------------- 168 (314)
T ss_pred -------------------------------------------------------------HHHhe--------------
Confidence 12221
Q ss_pred ceeecccCCCCcccCceEeCCCCceeecCCCCcCCCCCcccccCCCCCCCCCCccccccccccccCCCCCccccCCCccc
Q 002217 492 DWLFARQRYWGEPIPVVFLDGTGETVPLHEAELPLTLPELDDFTPTGTGEPPLSKAVSWVQTTEHSSGKPARRETSTMPQ 571 (952)
Q Consensus 492 DW~ISRQR~WG~PIPv~~~~~~~~~~~~~~~~l~v~lp~~~~~~~~G~~~~~l~~~~~w~~~~~~~~g~~~~re~d~lD~ 571 (952)
||||+.||+|+|+ + +|+++
T Consensus 169 ---isR~~~wGipvP~------~----------------------------------------------------~~i~~ 187 (314)
T cd00812 169 ---CSRQRYWGTPIPW------T----------------------------------------------------DTMES 187 (314)
T ss_pred ---eeeecCCcCCcCc------c----------------------------------------------------ccccc
Confidence 8999999999996 0 26789
Q ss_pred cccccchhheecCCCCchhH------hhhhhhhcCCCceeEecCchhhHHHHHHHHHHHHHHHHhcCcCCCCcchhhhhh
Q 002217 572 WAGSCWYYLRFMDPKNSKEL------VDKTKERYWSPVDVYVGGAEHAVLHLLYARFWHKVLYDIGVVSTKEPFKCVINQ 645 (952)
Q Consensus 572 WfdSswy~~~~~~p~~~~~~------~~~~~~~~w~PvDlyv~G~D~~~~HLly~Rfw~~~L~~~~~~~~~~PFk~l~~~ 645 (952)
||||.||++.|+........ ..++..++|+|+|+++.|+||+.+|++|+++|+.+|+..|++ ...|+++++.|
T Consensus 188 w~ds~~y~~~y~~~~~~~~~~~~~~~~~~~~~~~w~p~di~v~G~D~i~~h~~~~~~~~~~l~~~g~~-~~~~~~~~~~~ 266 (314)
T cd00812 188 LSDSTWYYARYTDAHNLEQPYEGDLEFDREEFEYWYPVDIYIGGKEHAPNHLLYSRFNHKALFDEGLV-TDEPPKGLIVQ 266 (314)
T ss_pred ccccHHHHHHHHhcccccCcchhhhhhhHHHHHHhCCCeeeecchhHHHHHHHHHHHHHHHHcCcccc-cccCcHHheec
Confidence 99999998887643321100 112234789999999999999999999999999999998865 45678899999
Q ss_pred ceeccccceeEEecCCCccccCCCCCcccccccccCccccccccCCceeeccCcchhhcccccccccCCCCCCChhhHHh
Q 002217 646 GIILGEMQYMVCKDVDGSYISADSTDTLGEYEQESIPEEKVMKSGDFFVMKDNPNIRLIARAHKMSKSRGNVVNPDDVVT 725 (952)
Q Consensus 646 G~vl~~~~y~~~~d~~g~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~vl~~~~~~~v~~~g~KMSKSkGNvV~P~eii~ 725 (952)
|||+. +|+|||||+||+|+|.|+++
T Consensus 267 g~v~~-------------------------------------------------------~g~KmSkS~Gn~v~~~dll~ 291 (314)
T cd00812 267 GMVLL-------------------------------------------------------EGEKMSKSKGNVVTPDEAIK 291 (314)
T ss_pred ceEec-------------------------------------------------------CccccCCcCCCCCCHHHHHH
Confidence 98863 27999999999999999999
Q ss_pred hhCchhhhhhhhhcCCCCCCCCCC
Q 002217 726 EYGADSLRLYEMFMGPFRDSKTWN 749 (952)
Q Consensus 726 ~YGaDalRl~ll~~~~~~~~~~~s 749 (952)
+||+|++|||+++.++ .+.+|+
T Consensus 292 ~~~~Da~R~~ll~~~~--~~~~f~ 313 (314)
T cd00812 292 KYGADAARLYILFAAP--PDADFD 313 (314)
T ss_pred HhCcHHHHHHHHhcCC--cCCCCC
Confidence 9999999999998877 555554
No 41
>KOG0436 consensus Methionyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=8.1e-57 Score=479.56 Aligned_cols=449 Identities=24% Similarity=0.386 Sum_probs=357.4
Q ss_pred CCcEEEEcCCCCCCCCCCCCchhHHHHHHHHHHHHHHHcCCcccccccccccChHHHHHHHHhCCCchHHHHHHHHHHHH
Q 002217 93 KPKFYVLDMFPYPSGAGLHVGHPLGYTATDILARLKRMQGYNVLHPMGWDAFGLPAEQYAIETGTHPKITTLRNINRFRT 172 (952)
Q Consensus 93 k~kf~i~~~~Pypng~~lHiGH~~~~~~~Di~~Ry~r~~G~~V~~~~G~D~~Glpie~~a~~~g~~~~~~~~~~~~~~~~ 172 (952)
.+.|+++.+.-|+|.. +||||+++.+++|+++||+|++|..|+|..|+|+||++|..+|...|..|.+.|++..++|++
T Consensus 38 ~~~~~lTTPifYvNAa-PHlGhlYS~llaDai~R~q~lkg~~v~fsTGTDEHGlKIqtaaatnG~~P~e~cDr~s~~f~q 116 (578)
T KOG0436|consen 38 GETFVLTTPIFYVNAA-PHLGHLYSTLLADAIARFQRLKGKKVIFSTGTDEHGLKIQTAAATNGRNPPELCDRISQSFRQ 116 (578)
T ss_pred CceeEEecceeecCCC-cchhHHHHHHHHHHHHHHHhhcCCceEeecCCCccchhhhhhHhhcCCChHHHHhhhhHHHHH
Confidence 3479999999999998 999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHcCCccccCCcccCCChhHHHHHHHHHHHHHHCCceeeeccccccCCCCCcccCchhhccC-------ccccCCCCe
Q 002217 173 QLKSLGFSYDWNREISTIEPAYYKWTQWIFLQLLKRGLAYQAEVPVNWCPALGTVLANEEVVDG-------VSERGGHPV 245 (952)
Q Consensus 173 ~l~~lgi~~Dw~~~~~T~~~~~~~~v~~~f~~L~~kGliy~~~~~v~wc~~~~t~ls~~Ev~~~-------~~~~~~~~~ 245 (952)
.++.+||.++ ++++|+||.|.+.|++++..+.++|+||++.+..+||.+|+|.+.+.+|... .+..+|.+|
T Consensus 117 L~k~~gi~yt--~FIRTTdpkH~a~Vqefw~~~~knG~iy~g~~eGwYcvsdEtf~pEskv~k~p~~~gk~vsmEsg~~v 194 (578)
T KOG0436|consen 117 LWKDAGIAYT--KFIRTTDPKHEAIVQEFWARVFKNGDIYRGDYEGWYCVSDETFYPESKVLKNPCPPGKVVSMESGNPV 194 (578)
T ss_pred HHHHhCcchh--heeecCCchHHHHHHHHHHHHHhCCceeeecccceEeccccccCCHHHHhcCCCCCCceeeeccCCce
Confidence 9999999988 9999999999999999999999999999999999999999999999999742 244688899
Q ss_pred EEeeccccchhhhhhhhHhhccCCCCCCchHHHHHHHhhhccCCCceEEEEEecCCCCccCcEEEEecCCcchhccccEE
Q 002217 246 IRKPMRQWMLKITEYADRLLDDLDDLDWPESVKEMQRNWIGRSEGAEMDFRVLDSDGQERDIKITVYTTRPDTIFGATYL 325 (952)
Q Consensus 246 ~~~~~~~~~~~i~~y~~~l~~~l~~~~~p~~~~~~~~~~i~~s~~~~v~f~~~~~~~~~~~~~i~i~TT~P~Tl~g~~~v 325 (952)
+++.+.+|||+++.|...|.+.|.+
T Consensus 195 v~~kE~NY~FrLSkfqk~l~d~lrk------------------------------------------------------- 219 (578)
T KOG0436|consen 195 VWRKEDNYFFRLSKFQKPLEDHLRK------------------------------------------------------- 219 (578)
T ss_pred eEecccceeeeHHhhhhHHHHHHhc-------------------------------------------------------
Confidence 9999999999999999888775431
Q ss_pred EECCCCccchhhccccchHHHHHHHHHHhccchhhHhhhhhcccccccceEEecCCCCCcccEEecCcccCCCCCCceEe
Q 002217 326 VVAPEHPLLSSLVSTTQSQNIEEYKNLASRKSDLERTELQKEKTGVFSGCYARNPASGEAIPIWVADYVLGSYGTGAIMA 405 (952)
Q Consensus 326 ~v~p~~~y~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~P~~~~~~pv~~~~~V~~~~GTG~V~~ 405 (952)
||+ ||.++
T Consensus 220 --NP~--------------------------------------------------------------fvqPs-------- 227 (578)
T KOG0436|consen 220 --NPR--------------------------------------------------------------FVQPS-------- 227 (578)
T ss_pred --CCC--------------------------------------------------------------ccCch--------
Confidence 111 00000
Q ss_pred cCCCChhhHHHHHHcCCceeeeecCCCCCCccccccccccceEEcccCcccccccCCCCHHHHHHHHHHHHHHcCCCcce
Q 002217 406 VPAHDTRDHEFALKFDISIHSVVMPDDESSSQSEKAYTGEGLIVNSSNLISGLDINGLSCQEATSKVIEWAEKTGNGKKK 485 (952)
Q Consensus 406 ~Pah~~~D~~~~~~~~L~i~~vv~~~~~~~~~~~~~y~~~g~l~~~~~~~~~~~~~gl~~~~a~~~ii~~l~~~~~~~~~ 485 (952)
-....|.+||+..
T Consensus 228 -------------------------------------------------------------~~~~qVl~~lktg------ 240 (578)
T KOG0436|consen 228 -------------------------------------------------------------YFHNQVLSWLKTG------ 240 (578)
T ss_pred -------------------------------------------------------------HHHHHHHHHHHcC------
Confidence 0112355566542
Q ss_pred ecccCCceeecc--cC-CCCcccCceEeCCCCceeecCCCCcCCCCCcccccCCCCCCCCCCccccccccccccCCCCCc
Q 002217 486 VNYKLRDWLFAR--QR-YWGEPIPVVFLDGTGETVPLHEAELPLTLPELDDFTPTGTGEPPLSKAVSWVQTTEHSSGKPA 562 (952)
Q Consensus 486 ~~~~l~DW~ISR--QR-~WG~PIPv~~~~~~~~~~~~~~~~l~v~lp~~~~~~~~G~~~~~l~~~~~w~~~~~~~~g~~~ 562 (952)
++|-.||| +| -||+|.|- ++.
T Consensus 241 ----lpDlSISRpsarl~WGIPvP~----dds------------------------------------------------ 264 (578)
T KOG0436|consen 241 ----LPDLSISRPSARLDWGIPVPG----DDS------------------------------------------------ 264 (578)
T ss_pred ----CCcccccChhhhcccCCCCCC----CCc------------------------------------------------
Confidence 78999999 77 59999993 211
Q ss_pred cccCCCccccccccchhhe-ecCCCCchhHhhhhhhhcCCCceeEecCchhhHHHHHHHHHHHHHHHHhcCcCCCCcchh
Q 002217 563 RRETSTMPQWAGSCWYYLR-FMDPKNSKELVDKTKERYWSPVDVYVGGAEHAVLHLLYARFWHKVLYDIGVVSTKEPFKC 641 (952)
Q Consensus 563 ~re~d~lD~WfdSswy~~~-~~~p~~~~~~~~~~~~~~w~PvDlyv~G~D~~~~HLly~Rfw~~~L~~~~~~~~~~PFk~ 641 (952)
.|..+|||.-..|+. .++|..... .+.....|+|+.+++-|+|++.+| +.+|.++|+..|+ ++=+.
T Consensus 265 ----QtIYVWfDAL~nYiSvig~~~~~~N--~k~~ls~~wPat~HvIGKDIlrFH---avYWPafLmaAGl----plP~~ 331 (578)
T KOG0436|consen 265 ----QTIYVWFDALLNYISVIGYPNKQQN--LKTALSFGWPATLHVIGKDILRFH---AVYWPAFLMAAGL----PLPKM 331 (578)
T ss_pred ----ceEEEeHHHHhhHHHhhcCCchhcc--ccceeecCCCceeeehhhhhhhhh---hhhhHHHHHhcCC----CCccE
Confidence 255689998644443 456642110 111236789999999999999999 5679999998886 33378
Q ss_pred hhhhceeccccceeEEecCCCccccCCCCCcccccccccCccccccccCCceeeccCcchhhcccccccccCCCCCCChh
Q 002217 642 VINQGIILGEMQYMVCKDVDGSYISADSTDTLGEYEQESIPEEKVMKSGDFFVMKDNPNIRLIARAHKMSKSRGNVVNPD 721 (952)
Q Consensus 642 l~~~G~vl~~~~y~~~~d~~g~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~vl~~~~~~~v~~~g~KMSKSkGNvV~P~ 721 (952)
++.||+.+- +|.|||||+||||||.
T Consensus 332 I~vHghwt~-------------------------------------------------------ngmKMsKSLGNvvdP~ 356 (578)
T KOG0436|consen 332 IFVHGHWTK-------------------------------------------------------NGMKMSKSLGNVVDPF 356 (578)
T ss_pred EEEeeeeee-------------------------------------------------------cceecchhhccccCHH
Confidence 888997642 3899999999999999
Q ss_pred hHHhhhCchhhhhhhhhcCCCCCCCCCChhhHHHHH-----HHHHHHHHHHhccCCCCCCCCCC---ccCCCCCChHHHH
Q 002217 722 DVVTEYGADSLRLYEMFMGPFRDSKTWNTSGIEGVH-----RFLGRMWRLIVGSSLPDGTFKGG---TVVNDEEPTLEQL 793 (952)
Q Consensus 722 eii~~YGaDalRl~ll~~~~~~~~~~~s~~~i~~~~-----r~l~~l~~~~~~~~~~~~~~~~~---~~~~~~~~d~~~l 793 (952)
+++++||+|++|||++..+..+.|.+|+++.+.... +.+.++.+.+++..+........ ..+.....+..+.
T Consensus 357 ~l~~kygvD~vRyflLr~~~l~~Dgdy~eekl~k~~n~~La~~lG~LlnRc~gkkln~sn~e~~l~~~s~~v~ae~~~lv 436 (578)
T KOG0436|consen 357 ELVQKYGVDAVRYFLLREGELGNDGDYSEEKLIKIVNAHLANTLGNLLNRCLGKKLNISNCESTLVVDSPTVAAEGEPLV 436 (578)
T ss_pred HHHHHhCccceeeEeeeccccCCCCCccHHHHHHHHHHHHHHHHHHHHHHHhhcccChhccccccccCCcchhhccchHH
Confidence 999999999999999999999999999998887654 23444445444432211110000 0111122344567
Q ss_pred HHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHhc-------ccc----------------hhHHHHHHHHHHhCCcchh
Q 002217 794 CTLHKCIAKVTEEIEGTRFNTGISAMMEFINAAYK-------WEK----------------HPRKIIEPFILLLAPYAPH 850 (952)
Q Consensus 794 ~~l~~~i~~v~~~~e~~~f~~ai~~l~~f~~~~~~-------~~~----------------~~~~vL~~l~~LLaPf~P~ 850 (952)
..++++.+.+.+.|++|.+..|+.++...+|+.|. |.. ...++|+.+.++|+|++|.
T Consensus 437 ~~v~kl~ev~a~~~d~f~~~~ale~V~si~n~~ntlvq~~aPWkl~~dsq~~~~~la~~~~~~le~lrv~~illqpv~Ps 516 (578)
T KOG0436|consen 437 DTVEKLPEVAATNYDNFSLYSALEAVLSIGNAGNTLVQQRAPWKLFKDSQVSAEELAKVLHIILEVLRVIGILLQPVAPS 516 (578)
T ss_pred HHHHHhHHHHHhhcccccHHHHHHHHHHHHHhhhhhhhhcCCceeccccCccHHHHHHHHHHHHHHHHHHHHHHccccch
Confidence 78899999999999999999999999999988765 320 1237899999999999999
Q ss_pred HHHHHHHHcCCC
Q 002217 851 MSEELWFRLGHS 862 (952)
Q Consensus 851 iaEElw~~L~~~ 862 (952)
+|.+++++||-+
T Consensus 517 ls~~llsqlgvs 528 (578)
T KOG0436|consen 517 LSLRLLSQLGVS 528 (578)
T ss_pred hHHHHHHHcCCC
Confidence 999999999854
No 42
>cd00668 Ile_Leu_Val_MetRS_core catalytic core domain of isoleucyl, leucyl, valyl and methioninyl tRNA synthetases. Catalytic core domain of isoleucyl, leucyl, valyl and methioninyl tRNA synthetases. These class I enzymes are all monomers. However, in some species, MetRS functions as a homodimer, as a result of an additional C-terminal domain. These enzymes aminoacylate the 2'-OH of the nucleotide at the 3' of the appropriate tRNA. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. It contains the characteristic class I HIGH and KMSKS motifs, which are involved in ATP binding. Enzymes in this subfamily share an insertion in the core domain, which is subject to both deletions and rearrangements. This editing region hydrolyzes mischarged cognate tRNAs and thus prevents the incorporation of chemically similar amino acids. MetRS has a significantly shorter insertion, which lacks the editing function.
Probab=100.00 E-value=1.1e-57 Score=508.12 Aligned_cols=145 Identities=39% Similarity=0.728 Sum_probs=137.2
Q ss_pred cEEEEcCCCCCCCCCCCCchhHHHHHHHHHHHHHHHcCCcccccccccccChHHHHHHHHhCC-------------CchH
Q 002217 95 KFYVLDMFPYPSGAGLHVGHPLGYTATDILARLKRMQGYNVLHPMGWDAFGLPAEQYAIETGT-------------HPKI 161 (952)
Q Consensus 95 kf~i~~~~Pypng~~lHiGH~~~~~~~Di~~Ry~r~~G~~V~~~~G~D~~Glpie~~a~~~g~-------------~~~~ 161 (952)
||+|+++||||||. |||||+++++++|+++||+||+|++|.+++||||||+|||.+|++.+. .|++
T Consensus 1 ~~~i~~~pP~~~g~-~HiGH~~~~i~~D~i~R~~r~~G~~v~~~~g~D~~g~~i~~~a~~~~~~~~~~~~~~~~~~~~~~ 79 (312)
T cd00668 1 KFYVTTPPPYANGS-LHLGHALTHIIADFIARYKRMRGYEVPFLPGWDTHGLPIELKAERKGGRKKKTIWIEEFREDPKE 79 (312)
T ss_pred CEEEecCCCCCCCC-cchhHHHHHHHHHHHHHHHHhCCCCCCCCCccCCCCHHHHHHHHHhcCcccccccHHHHHHHHHH
Confidence 59999999999998 999999999999999999999999999999999999999999999877 7899
Q ss_pred HHHHHHHHHHHHHHHcCCccccCCcccCCChhHHHHHHHHHHHHHHCCceeeeccccccCCCCCcccCchhhccCccccC
Q 002217 162 TTLRNINRFRTQLKSLGFSYDWNREISTIEPAYYKWTQWIFLQLLKRGLAYQAEVPVNWCPALGTVLANEEVVDGVSERG 241 (952)
Q Consensus 162 ~~~~~~~~~~~~l~~lgi~~Dw~~~~~T~~~~~~~~v~~~f~~L~~kGliy~~~~~v~wc~~~~t~ls~~Ev~~~~~~~~ 241 (952)
+++++++.|+++|++|||++||++++.|+++.|.+.++++|.+|+++|+||++..+|
T Consensus 80 ~~~~~~~~~~~~l~~lgI~~Dw~~~~~T~~~~~~~~v~~~f~~L~~~G~iY~~~~~v----------------------- 136 (312)
T cd00668 80 FVEEMSGEHKEDFRRLGISYDWSDEYITTEPEYSKAVELIFSRLYEKGLIYRGTHPV----------------------- 136 (312)
T ss_pred HHHHHHHHHHHHHHHhCccccCCCCeECCCHHHHHHHHHHHHHHHHCCCEEeeccee-----------------------
Confidence 999999999999999999999999999999999999999999999999999998887
Q ss_pred CCCeEEeeccccchhhhhhhhHhhccCC
Q 002217 242 GHPVIRKPMRQWMLKITEYADRLLDDLD 269 (952)
Q Consensus 242 ~~~~~~~~~~~~~~~i~~y~~~l~~~l~ 269 (952)
+...||||+++++++++++.++
T Consensus 137 ------~~~~~~f~~~~~l~~~~~~~~~ 158 (312)
T cd00668 137 ------RITEQWFFDMPKFKEKLLKALR 158 (312)
T ss_pred ------EeeeeEEEEcHHHHHHHHHHHh
Confidence 4667899999999888776544
No 43
>cd00814 MetRS_core catalytic core domain of methioninyl-tRNA synthetases. Methionine tRNA synthetase (MetRS) catalytic core domain. This class I enzyme aminoacylates the 2'-OH of the nucleotide at the 3' of the appropriate tRNA. MetRS, which consists of the core domain and an anti-codon binding domain, functions as a monomer. However, in some species the anti-codon binding domain is followed by an EMAP domain. In this case, MetRS functions as a homodimer. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. It contains the characteristic class I HIGH and KMSKS motifs, which are involved in ATP binding. As a result of a deletion event, MetRS has a significantly shorter core domain insertion than IleRS, ValRS, and LeuR. Consequently, the MetRS insertion lacks the editing function.
Probab=100.00 E-value=1e-55 Score=493.07 Aligned_cols=169 Identities=29% Similarity=0.494 Sum_probs=155.2
Q ss_pred cEEEEcCCCCCCCCCCCCchhHHHHHHHHHHHHHHHcCCcccccccccccChHHHHHHHHhCCCchHHHHHHHHHHHHHH
Q 002217 95 KFYVLDMFPYPSGAGLHVGHPLGYTATDILARLKRMQGYNVLHPMGWDAFGLPAEQYAIETGTHPKITTLRNINRFRTQL 174 (952)
Q Consensus 95 kf~i~~~~Pypng~~lHiGH~~~~~~~Di~~Ry~r~~G~~V~~~~G~D~~Glpie~~a~~~g~~~~~~~~~~~~~~~~~l 174 (952)
+|+|+.+||||||. |||||+++++++|+++||+||+|++|.+++|+|+||+||+.+|+++|++|+++++++++.|++++
T Consensus 1 ~~~it~~~Py~ng~-~HlGH~~~~~~~Dv~~R~~r~~G~~V~~~~g~Dd~g~~i~~~a~~~g~~~~e~~~~~~~~~~~~l 79 (319)
T cd00814 1 KVLITTALPYVNGV-PHLGHLYGTVLADVFARYQRLRGYDVLFVTGTDEHGTKIEQKAEEEGVTPQELCDKYHEIFKDLF 79 (319)
T ss_pred CEEEEeCCCCCCCC-cchhhHHHHHHHHHHHHHHHhCCCcccccCccCCCCcHHHHHHHHcCCCHHHHHHHHHHHHHHHH
Confidence 58999999999998 99999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHcCCccccCCcccCCChhHHHHHHHHHHHHHHCCceeeeccccccCCCCCcccCchhhccCccccCCCCeEEeeccccc
Q 002217 175 KSLGFSYDWNREISTIEPAYYKWTQWIFLQLLKRGLAYQAEVPVNWCPALGTVLANEEVVDGVSERGGHPVIRKPMRQWM 254 (952)
Q Consensus 175 ~~lgi~~Dw~~~~~T~~~~~~~~v~~~f~~L~~kGliy~~~~~v~wc~~~~t~ls~~Ev~~~~~~~~~~~~~~~~~~~~~ 254 (952)
++|||.+| .+++|+++.|.+.++++|.+|+++|++|++...++||+.|+++|+ +.++++|||
T Consensus 80 ~~LgI~~D--~~~~tt~~~~~~~v~~i~~~L~ekG~iY~~~~~~~yc~~~~~~l~----------------e~~~~~~~f 141 (319)
T cd00814 80 KWLNISFD--YFIRTTSPRHKEIVQEFFKKLYENGYIYEGEYEGLYCVSCERFLP----------------EWREEEHYF 141 (319)
T ss_pred HHcCCcCC--CCeeCCCHHHHHHHHHHHHHHHHCCCEEeeeeeeeECCCCCcEee----------------EEEeeeeEE
Confidence 99999776 788999999999999999999999999999999999999999999 667889999
Q ss_pred hhhhhhhhHhhccCCCCC---CchHHHHHHH
Q 002217 255 LKITEYADRLLDDLDDLD---WPESVKEMQR 282 (952)
Q Consensus 255 ~~i~~y~~~l~~~l~~~~---~p~~~~~~~~ 282 (952)
|++++|++.|++++++.. ||+.+++..+
T Consensus 142 f~l~~~~~~l~~~~~~~~~~~~p~~~~~~~~ 172 (319)
T cd00814 142 FRLSKFQDRLLEWLEKNPDFIWPENARNEVL 172 (319)
T ss_pred EEhHHHHHHHHHHHHhCCccCCCHHHHHHHH
Confidence 999999999987765432 5554444333
No 44
>PF09334 tRNA-synt_1g: tRNA synthetases class I (M); InterPro: IPR015413 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. This domain is found in methionyl and leucyl tRNA synthetases. ; GO: 0000166 nucleotide binding, 0004812 aminoacyl-tRNA ligase activity, 0005524 ATP binding, 0006418 tRNA aminoacylation for protein translation, 0005737 cytoplasm; PDB: 2D5B_A 1A8H_A 1WOY_A 2D54_A 4DLP_A 2CT8_B 2CSX_A 1MED_A 1PFU_A 1PFW_A ....
Probab=100.00 E-value=2.5e-55 Score=499.27 Aligned_cols=341 Identities=30% Similarity=0.503 Sum_probs=260.0
Q ss_pred EEEEcCCCCCCCCCCCCchhHHHHHHHHHHHHHHHcCCcccccccccccChHHHHHHHHhCCCchHHHHHHHHHHHHHHH
Q 002217 96 FYVLDMFPYPSGAGLHVGHPLGYTATDILARLKRMQGYNVLHPMGWDAFGLPAEQYAIETGTHPKITTLRNINRFRTQLK 175 (952)
Q Consensus 96 f~i~~~~Pypng~~lHiGH~~~~~~~Di~~Ry~r~~G~~V~~~~G~D~~Glpie~~a~~~g~~~~~~~~~~~~~~~~~l~ 175 (952)
|+|+.++|||||. |||||++.++.+|+++||+||+|++|++++|+|+||+||+.+|+++|++|+++++++.+.|++.|+
T Consensus 1 ~~ITt~~pY~Ng~-lHlGH~~~~l~ADv~aR~~r~~G~~v~~~tGtDehG~~i~~~A~~~g~~p~~~~~~~~~~~~~~~~ 79 (391)
T PF09334_consen 1 FYITTPIPYPNGD-LHLGHLYPYLAADVLARYLRLRGHDVLFVTGTDEHGSKIETAAEKQGIDPEEFCDKYSAKFKELLE 79 (391)
T ss_dssp EEEEEEEEETSSS--BHHHHHHHHHHHHHHHHHHHTT-EEEEEEEEE-SSHHHHHHHHHTTS-HHHHHHHHHHHHHHHHH
T ss_pred CEEecCCCCCCCC-CCCChhHHHHHHHHHHHHHhhcccceeeEEecchhhHHHHHHHHHcCCCHHHHHHHHHHHHHHHHH
Confidence 7899999999998 999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HcCCccccCCcccCCChhHHHHHHHHHHHHHHCCceeeeccccccCCCCCcccCchhhccC------------ccccCCC
Q 002217 176 SLGFSYDWNREISTIEPAYYKWTQWIFLQLLKRGLAYQAEVPVNWCPALGTVLANEEVVDG------------VSERGGH 243 (952)
Q Consensus 176 ~lgi~~Dw~~~~~T~~~~~~~~v~~~f~~L~~kGliy~~~~~v~wc~~~~t~ls~~Ev~~~------------~~~~~~~ 243 (952)
++||++| ++.+|+++.|.++|+++|.+|+++|+||+++..++||+.|++.|++.+|+.. .|+.||.
T Consensus 80 ~~~I~~D--~F~rTt~~~h~~~v~~i~~~L~~~G~I~~~~~~~~Yc~~~e~fl~e~~v~g~CP~C~~~~a~g~~Ce~cG~ 157 (391)
T PF09334_consen 80 ALNISYD--RFIRTTDDRHKEFVQEIFKRLYDNGYIYKREYEGWYCPSCERFLPESFVEGTCPYCGSDKARGDQCENCGR 157 (391)
T ss_dssp HTT---S--EEEETTSHHHHHHHHHHHHHHHHTTSEEEEEEEEEEETTTTEEE-GGGETCEETTT--SSCTTTEETTTSS
T ss_pred HcCCCCc--ceeCCCCHHHHHHHHHHHHHHHhcCceeecccceeEecCcCcccccceeeccccCcCccccCCCcccCCCC
Confidence 9999998 8999999999999999999999999999999999999999999999998521 2345666
Q ss_pred CeE-----------------EeeccccchhhhhhhhHhhccCCCCC--CchHHHHHHHhhhccCCCceEEEEEecCCCCc
Q 002217 244 PVI-----------------RKPMRQWMLKITEYADRLLDDLDDLD--WPESVKEMQRNWIGRSEGAEMDFRVLDSDGQE 304 (952)
Q Consensus 244 ~~~-----------------~~~~~~~~~~i~~y~~~l~~~l~~~~--~p~~~~~~~~~~i~~s~~~~v~f~~~~~~~~~ 304 (952)
++. .+++++|||+|++|++.|.+++++.. ||+.+++++++||
T Consensus 158 ~~~~~~l~~p~~~~~g~~~~~r~e~~~ff~L~~~~~~L~~~l~~~~~~~~~~~~~~~~~~l------------------- 218 (391)
T PF09334_consen 158 PLEPEELINPVCKICGSPPEVREEENYFFKLSKFRDQLREWLESNPDFPPPRVREIVRNWL------------------- 218 (391)
T ss_dssp BEECCCSECEEETTTS-B-EEEEEEEEEE-GGGGHHHHHHHHHHSTTSSHHHHHHHHHHHH-------------------
T ss_pred CcccccccCCccccccccCccccceEEEEehHHhHHHHHHHHhcCCCCCChhHHHHHHHHh-------------------
Confidence 554 88899999999999999988876543 6665555554443
Q ss_pred cCcEEEEecCCcchhccccEEEECCCCccchhhccccchHHHHHHHHHHhccchhhHhhhhhcccccccceEEecCCCCC
Q 002217 305 RDIKITVYTTRPDTIFGATYLVVAPEHPLLSSLVSTTQSQNIEEYKNLASRKSDLERTELQKEKTGVFSGCYARNPASGE 384 (952)
Q Consensus 305 ~~~~i~i~TT~P~Tl~g~~~v~v~p~~~y~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~P~~~~ 384 (952)
T Consensus 219 -------------------------------------------------------------------------------- 218 (391)
T PF09334_consen 219 -------------------------------------------------------------------------------- 218 (391)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred cccEEecCcccCCCCCCceEecCCCChhhHHHHHHcCCceeeeecCCCCCCccccccccccceEEcccCcccccccCCCC
Q 002217 385 AIPIWVADYVLGSYGTGAIMAVPAHDTRDHEFALKFDISIHSVVMPDDESSSQSEKAYTGEGLIVNSSNLISGLDINGLS 464 (952)
Q Consensus 385 ~~pv~~~~~V~~~~GTG~V~~~Pah~~~D~~~~~~~~L~i~~vv~~~~~~~~~~~~~y~~~g~l~~~~~~~~~~~~~gl~ 464 (952)
T Consensus 219 -------------------------------------------------------------------------------- 218 (391)
T PF09334_consen 219 -------------------------------------------------------------------------------- 218 (391)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HHHHHHHHHHHHHHcCCCcceecccCCceeecccCCCCcccCceEeCCCCceeecCCCCcCCCCCcccccCCCCCCCCCC
Q 002217 465 CQEATSKVIEWAEKTGNGKKKVNYKLRDWLFARQRYWGEPIPVVFLDGTGETVPLHEAELPLTLPELDDFTPTGTGEPPL 544 (952)
Q Consensus 465 ~~~a~~~ii~~l~~~~~~~~~~~~~l~DW~ISRQR~WG~PIPv~~~~~~~~~~~~~~~~l~v~lp~~~~~~~~G~~~~~l 544 (952)
.+ .|+||+|||.-.||+|+|- +.+
T Consensus 219 ------------~~----------~L~d~~Is~~~~WGI~vP~----~~~------------------------------ 242 (391)
T PF09334_consen 219 ------------KE----------GLPDLSISRPLDWGIPVPG----DPG------------------------------ 242 (391)
T ss_dssp ------------HT--------------EE-ECTTSSSEEETT----EEE------------------------------
T ss_pred ------------hc----------ccCceeeecCCCCcceeec----cCC------------------------------
Confidence 10 2679999999999999991 111
Q ss_pred ccccccccccccCCCCCccccCCCccccccccchhheecCCCCchhHhhhhhhhcC-C---CceeEecCchhhHHHHHHH
Q 002217 545 SKAVSWVQTTEHSSGKPARRETSTMPQWAGSCWYYLRFMDPKNSKELVDKTKERYW-S---PVDVYVGGAEHAVLHLLYA 620 (952)
Q Consensus 545 ~~~~~w~~~~~~~~g~~~~re~d~lD~WfdSswy~~~~~~p~~~~~~~~~~~~~~w-~---PvDlyv~G~D~~~~HLly~ 620 (952)
-|+.||||..+-|+....-......-.....++| - +--+++-|+|++.+|.
T Consensus 243 ----------------------~~iyVWfdal~~Ylt~~~~~~~~~~~~~~~~~~w~~~~~~~~v~~iGkDi~~fH~--- 297 (391)
T PF09334_consen 243 ----------------------QVIYVWFDALIGYLTATGYLAEKRGDPEEFKKWWANDSDVEIVHFIGKDIIRFHA--- 297 (391)
T ss_dssp ----------------------EEE-HHHHHHTHHHHTTTTTHHHTTTSHHHHHHHCST--SEEEEEEEGGGHHHHH---
T ss_pred ----------------------ceEEEcchHHHHHHHHhccccccccccchhhhhccccCCceEEEEEccchhHHHH---
Confidence 2677999987666543211100000011223455 0 1228889999999995
Q ss_pred HHHHHHHHHhcCcCCCCcchhhhhhceeccccceeEEecCCCccccCCCCCcccccccccCccccccccCCceeeccCcc
Q 002217 621 RFWHKVLYDIGVVSTKEPFKCVINQGIILGEMQYMVCKDVDGSYISADSTDTLGEYEQESIPEEKVMKSGDFFVMKDNPN 700 (952)
Q Consensus 621 Rfw~~~L~~~~~~~~~~PFk~l~~~G~vl~~~~y~~~~d~~g~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~vl~~~~~ 700 (952)
.+|...|+..++ ..| +++++||+++-
T Consensus 298 i~~pa~l~a~~~---~lP-~~i~~~~~~~~-------------------------------------------------- 323 (391)
T PF09334_consen 298 IYWPAMLLAAGL---PLP-RRIVVHGFLTL-------------------------------------------------- 323 (391)
T ss_dssp THHHHHHHHCTB-------SEEEEE--EEE--------------------------------------------------
T ss_pred HHhHHHHhcccC---CCC-CEEEeeeeEEE--------------------------------------------------
Confidence 568777776443 344 88999987752
Q ss_pred hhhcccccccccCCCCCCChhhHHhhhCchhhhhhhhhcCCCCCCCCCChhhHHHHHH
Q 002217 701 IRLIARAHKMSKSRGNVVNPDDVVTEYGADSLRLYEMFMGPFRDSKTWNTSGIEGVHR 758 (952)
Q Consensus 701 ~~v~~~g~KMSKSkGNvV~P~eii~~YGaDalRl~ll~~~~~~~~~~~s~~~i~~~~r 758 (952)
+|+|||||+||+|+|.+++++||+|++||||++.+|..++.+|+++.+...++
T Consensus 324 -----~g~K~SkS~gn~i~~~~~~~~~~~D~~R~~L~~~~~~~~d~~F~~~~~~~~~n 376 (391)
T PF09334_consen 324 -----DGEKMSKSRGNVIWPDDLLEEYGADALRYYLAREGPEGQDSDFSWEDFIERVN 376 (391)
T ss_dssp -----TTCCEETTTTESSBHHHHHHHH-HHHHHHHHHHHSSTTS-EEE-HHHHHHHHH
T ss_pred -----CCeeccccCCcccCHHHHHHhCChHHHHHHHHHhcCCCCCCCCCHHHHHHHHH
Confidence 38999999999999999999999999999999999999999999988876544
No 45
>PRK00260 cysS cysteinyl-tRNA synthetase; Validated
Probab=100.00 E-value=3.3e-41 Score=392.48 Aligned_cols=128 Identities=24% Similarity=0.252 Sum_probs=116.1
Q ss_pred CCCCCcEEEEcCCCCCCCCCCCCchhHHHHHHHHHHHHHHHcCCcccccccccccChHHHHHHHHhCCCchHHHHHHHHH
Q 002217 90 DTSKPKFYVLDMFPYPSGAGLHVGHPLGYTATDILARLKRMQGYNVLHPMGWDAFGLPAEQYAIETGTHPKITTLRNINR 169 (952)
Q Consensus 90 ~~~k~kf~i~~~~Pypng~~lHiGH~~~~~~~Di~~Ry~r~~G~~V~~~~G~D~~Glpie~~a~~~g~~~~~~~~~~~~~ 169 (952)
+.++.++|+| .|+|+|. +||||+++|+..|+++||+||+||+|.|++|+|++|.+|+.+|.+.|.+|+++++++++.
T Consensus 20 ~~~~v~~yvc--gPtvy~~-~HiGHar~~v~~Dvl~R~lr~~G~~V~~v~~~tD~ddki~~~A~~~g~~~~e~~~~~~~~ 96 (463)
T PRK00260 20 EPGKVKMYVC--GPTVYDY-AHIGHARSFVVFDVLRRYLRYLGYKVTYVRNITDIDDKIIKRANEEGESIKELTERYIAA 96 (463)
T ss_pred CCCcceEEEe--CCccCCC-cccccchhHHHHHHHHHHHHhcCCceEEeecCCCCcHHHHHHHHHcCCCHHHHHHHHHHH
Confidence 3467788886 6888998 999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHcCC-ccccCCcccCCChhHHHHHHHHHHHHHHCCceeeeccccccCCCC
Q 002217 170 FRTQLKSLGF-SYDWNREISTIEPAYYKWTQWIFLQLLKRGLAYQAEVPVNWCPAL 224 (952)
Q Consensus 170 ~~~~l~~lgi-~~Dw~~~~~T~~~~~~~~v~~~f~~L~~kGliy~~~~~v~wc~~~ 224 (952)
|++++++||| ..||. ..++ +|...+++++.+|+++|++|++..+|+||+..
T Consensus 97 f~~~~~~Lgi~~~d~~--~r~t--~~~~~~~~~i~~L~~kG~aY~~~~~Vyfdv~~ 148 (463)
T PRK00260 97 FHEDMDALNVLPPDIE--PRAT--EHIPEIIELIERLIDKGHAYEADGDVYFDVRK 148 (463)
T ss_pred HHHHHHHcCCCCCCcc--cccc--ccHHHHHHHHHHHHHCCCEEEecCeEEEeccc
Confidence 9999999999 56753 2222 58889999999999999999999999999874
No 46
>TIGR00435 cysS cysteinyl-tRNA synthetase. This model finds the cysteinyl-tRNA synthetase from most but not from all species. The enzyme from one archaeal species, Archaeoglobus fulgidus, is found but the equivalent enzymes from some other Archaea, including Methanococcus jannaschii, are not found, although biochemical evidence suggests that tRNA(Cys) in these species are charged directly with Cys rather than through a misacylation and correction pathway as for tRNA(Gln).
Probab=100.00 E-value=6.7e-38 Score=363.77 Aligned_cols=130 Identities=22% Similarity=0.152 Sum_probs=118.8
Q ss_pred CCCCCcEEEEcCCCCCCCCCCCCchhHHHHHHHHHHHHHHHcCCcccccccccccChHHHHHHHHhCCCchHHHHHHHHH
Q 002217 90 DTSKPKFYVLDMFPYPSGAGLHVGHPLGYTATDILARLKRMQGYNVLHPMGWDAFGLPAEQYAIETGTHPKITTLRNINR 169 (952)
Q Consensus 90 ~~~k~kf~i~~~~Pypng~~lHiGH~~~~~~~Di~~Ry~r~~G~~V~~~~G~D~~Glpie~~a~~~g~~~~~~~~~~~~~ 169 (952)
++++.++|++ .||||+. +||||+++|+..|+++||+|++||+|.|++|+|+||.+|+.+|.+.|++|.++++++++.
T Consensus 18 ~~~~v~~yvc--gptvy~~-~HiGhar~~v~~Dvl~R~lr~~G~~V~~v~n~tD~ddkIi~~A~~~g~~~~e~a~~~~~~ 94 (465)
T TIGR00435 18 VQGKVKMYVC--GPTVYDY-CHIGHARTAIVFDVLRRYLRYLGYKVQYVQNITDIDDKIIKRARENGESVYEVSERFIEA 94 (465)
T ss_pred CCCcceEEEe--cCccCCC-cccccchHHHHHHHHHHHHHHcCCcEEEEEeeCCccHHHHHHHHHcCCCHHHHHHHHHHH
Confidence 4567888886 5789998 999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHcCCccccCCcccCCChhHHHHHHHHHHHHHHCCceeeec-cccccCCCCC
Q 002217 170 FRTQLKSLGFSYDWNREISTIEPAYYKWTQWIFLQLLKRGLAYQAE-VPVNWCPALG 225 (952)
Q Consensus 170 ~~~~l~~lgi~~Dw~~~~~T~~~~~~~~v~~~f~~L~~kGliy~~~-~~v~wc~~~~ 225 (952)
|.+++++|||++|+-....| .|...+++++.+|.++|++|++. ..|+||+.|.
T Consensus 95 f~~dl~~LgI~~d~~~~raT---~hi~~i~~~i~~L~ekG~aY~~~~g~vyfdv~~~ 148 (465)
T TIGR00435 95 YFEDMKALNVLPPDLEPRAT---EHIDEIIEFIEQLIEKGYAYVSDNGDVYFDVSKF 148 (465)
T ss_pred HHHHHHHhCCCCCcCCcccc---ccHHHHHHHHHHHHHCCCEEEecCCcEEEecccc
Confidence 99999999999985323233 79999999999999999999998 9999998874
No 47
>PTZ00399 cysteinyl-tRNA-synthetase; Provisional
Probab=100.00 E-value=8.6e-37 Score=364.82 Aligned_cols=121 Identities=19% Similarity=0.258 Sum_probs=108.8
Q ss_pred CCCCCcEEEEcCCCCCCCCCCCCchhHHHHHHHHHHHHHH-HcCCcccccccccccChHHHHHHHHhCCC-chHHHHHHH
Q 002217 90 DTSKPKFYVLDMFPYPSGAGLHVGHPLGYTATDILARLKR-MQGYNVLHPMGWDAFGLPAEQYAIETGTH-PKITTLRNI 167 (952)
Q Consensus 90 ~~~k~kf~i~~~~Pypng~~lHiGH~~~~~~~Di~~Ry~r-~~G~~V~~~~G~D~~Glpie~~a~~~g~~-~~~~~~~~~ 167 (952)
+.++-++|+|. |++++. +||||||+|+..|+++||+| ..||+|.|++|+|+||.+|..+|.+.|++ +.++++++.
T Consensus 57 ~~~~v~~Y~CG--PTvYd~-~HiGhart~v~~Dil~R~l~~~~Gy~V~~v~nitDidDKIi~~A~~~g~~~~~el~~~~~ 133 (651)
T PTZ00399 57 NGRQVRWYTCG--PTVYDS-SHLGHARTYVTFDIIRRILEDYFGYDVFYVMNITDIDDKIIKRAREEKLSIFLELARKWE 133 (651)
T ss_pred CCCeeEEEEeC--CCccCC-cccccchHHHHHHHHHHHHHHhcCCceEEEeCCCCcchHHHHHHHHhCCCcHHHHHHHHH
Confidence 34567888875 555587 99999999999999999999 99999999999999999999999999999 999999999
Q ss_pred HHHHHHHHHcCCccccCCcccCCChhHHHHHHHHHHHHHHCCceeeecc
Q 002217 168 NRFRTQLKSLGFSYDWNREISTIEPAYYKWTQWIFLQLLKRGLAYQAEV 216 (952)
Q Consensus 168 ~~~~~~l~~lgi~~Dw~~~~~T~~~~~~~~v~~~f~~L~~kGliy~~~~ 216 (952)
+.|.+++++|||..+ ..+.|. .+|...++.++.+|+++|++|.+..
T Consensus 134 ~~f~~d~~~Lni~~p--~~~~r~-tehi~~ii~~i~~Li~~G~aY~~~g 179 (651)
T PTZ00399 134 KEFFEDMKALNVRPP--DVITRV-SEYVPEIVDFIQKIIDNGFAYESNG 179 (651)
T ss_pred HHHHHHHHHcCCCCC--ccccCc-CccHHHHHHHHHHHHHCCCEEEECC
Confidence 999999999999887 444444 7999999999999999999998743
No 48
>PF13603 tRNA-synt_1_2: Leucyl-tRNA synthetase, Domain 2; PDB: 2AJH_B 4ARI_A 2AJG_B 4AQ7_D 2AJI_B 4ARC_A 4AS1_A 2BTE_A 2V0G_A 2BYT_A ....
Probab=100.00 E-value=3.8e-37 Score=310.80 Aligned_cols=183 Identities=50% Similarity=0.903 Sum_probs=138.7
Q ss_pred HhhhccCCCceEEEEEecCCCCccCcEEEEecCCcchhccccEEEECCCCccchhhccccchHHHHHHHHHHhccchhhH
Q 002217 282 RNWIGRSEGAEMDFRVLDSDGQERDIKITVYTTRPDTIFGATYLVVAPEHPLLSSLVSTTQSQNIEEYKNLASRKSDLER 361 (952)
Q Consensus 282 ~~~i~~s~~~~v~f~~~~~~~~~~~~~i~i~TT~P~Tl~g~~~v~v~p~~~y~~~~~~~~~~~~~~~y~~~~~~~~~~~~ 361 (952)
|||||||+|+.|+|++.+. +..|.|||||||||+|++||+++|+|+++..+ .+.+..+.+|++.+......++
T Consensus 1 rNWIGkS~G~~i~F~i~~~-----~~~i~vFTTrpdTifGvtfials~~H~lv~~l--~~~~~~l~~fi~~~~~~~~~~~ 73 (185)
T PF13603_consen 1 RNWIGKSEGAEIDFKIKGS-----NEKIEVFTTRPDTIFGVTFIALSPEHPLVKKL--AENNPELQEFIEKCKKIKNSER 73 (185)
T ss_dssp HHHH-EEEEEEEEEEBTTS-----SCEEEEEES-GGGGGG--EEEEETTSCHHHHC--TTTHHHHHHHHHHHHTS-HHHH
T ss_pred CCCcCCcccEEEEEEecCC-----CCEEEEEECCcchhhCceEEEECCCCHHHHhh--hhhhhhHHHHHHHHhcCCHhHh
Confidence 6999999999999999643 35899999999999999999999999998776 3456677889888877776666
Q ss_pred hhhhhcccccccceEEecCCCCCcccEEecCcccCCCCCCceEecCCCChhhHHHHHHcCCceeeeecCCCCC--Ccccc
Q 002217 362 TELQKEKTGVFSGCYARNPASGEAIPIWVADYVLGSYGTGAIMAVPAHDTRDHEFALKFDISIHSVVMPDDES--SSQSE 439 (952)
Q Consensus 362 ~~~~~~~~~~l~g~~~~~P~~~~~~pv~~~~~V~~~~GTG~V~~~Pah~~~D~~~~~~~~L~i~~vv~~~~~~--~~~~~ 439 (952)
......+.|.++|.++.||++++++|||+++||+++|||||||+||+||++||+||++||||+..||.+.+.. .....
T Consensus 74 ~~~~~~k~Gv~tg~~aihP~t~~~iPI~va~yVl~~yGtgAVmgvPahD~rD~~FAk~~~lpi~~Vi~~~~~~~~~~~~~ 153 (185)
T PF13603_consen 74 NKDFKEKEGVFTGLYAIHPLTGKKIPIYVANYVLMDYGTGAVMGVPAHDERDFEFAKKYNLPIKQVIKPKDDNEEIDNKQ 153 (185)
T ss_dssp HHCSSS--EEEEEEEEE-TTTS-EEEEEEETTS-TTSTTSEEEE-CCC-HHHHHHHHHHT------EEBSSSS---STTS
T ss_pred hhhccccccCcCCCEEECCCCCCCccEEEECceeecCCcceEEEcCCCCHHHHHHHHHcCCCeeEEEcCCCCcccccccc
Confidence 5555678899999999999999999999999999999999999999999999999999999999999887543 23356
Q ss_pred ccccccceEEcccCcccccccCCCCHHHHHHHHHHHHH
Q 002217 440 KAYTGEGLIVNSSNLISGLDINGLSCQEATSKVIEWAE 477 (952)
Q Consensus 440 ~~y~~~g~l~~~~~~~~~~~~~gl~~~~a~~~ii~~l~ 477 (952)
.+|.++|+|+||.. |+||+.++|+++|+++|+
T Consensus 154 ~~~~~~G~l~nS~~------f~Gl~~~eA~~~I~~~Le 185 (185)
T PF13603_consen 154 EAYTGDGILINSGE------FNGLSSKEAREKIIKKLE 185 (185)
T ss_dssp S---S--EE-SSGG------GTTSBHHHHHHHHHHHHH
T ss_pred cCcCCCEEEEeCCC------CCCCCHHHHHHHHHHHhC
Confidence 78999999999875 999999999999999985
No 49
>PRK12418 cysteinyl-tRNA synthetase; Provisional
Probab=100.00 E-value=4.3e-36 Score=336.15 Aligned_cols=126 Identities=23% Similarity=0.262 Sum_probs=112.7
Q ss_pred CC-CCcEEEEcCCCCCCCCCCCCchhHHHHHHHHHHHHHHHcCCcccccccccccChHHHHHHHHhCCCchHHHHHHHHH
Q 002217 91 TS-KPKFYVLDMFPYPSGAGLHVGHPLGYTATDILARLKRMQGYNVLHPMGWDAFGLPAEQYAIETGTHPKITTLRNINR 169 (952)
Q Consensus 91 ~~-k~kf~i~~~~Pypng~~lHiGH~~~~~~~Di~~Ry~r~~G~~V~~~~G~D~~Glpie~~a~~~g~~~~~~~~~~~~~ 169 (952)
++ +-++|+|. |++.+. +||||+++++..|+++||+|++|++|.|++|+|+||.+|+.+|++.|++++++++++++.
T Consensus 6 ~~~~v~~YvCG--pTvY~~-~HIGh~r~~V~~Dvl~R~lr~~G~~V~~V~nitD~ddKIi~~A~~~G~~~~e~a~~~~~~ 82 (384)
T PRK12418 6 PGGTATMYVCG--ITPYDA-THLGHAATYLAFDLVNRVWRDAGHDVHYVQNVTDVDDPLLERAARDGVDWRDLAEREIAL 82 (384)
T ss_pred CCCeeEEEecC--CCCCCC-CccchhHHHHHHHHHHHHHHHcCCceEEEEecCCcchHHHHHHHHcCCCHHHHHHHHHHH
Confidence 44 55788875 455587 999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHcCC-ccccCCcccCCChhHHHHHHHHHHHHHHCCceeeecc----ccccCCC
Q 002217 170 FRTQLKSLGF-SYDWNREISTIEPAYYKWTQWIFLQLLKRGLAYQAEV----PVNWCPA 223 (952)
Q Consensus 170 ~~~~l~~lgi-~~Dw~~~~~T~~~~~~~~v~~~f~~L~~kGliy~~~~----~v~wc~~ 223 (952)
|.+.+++||| ..| .+.+|++ +.+.++.++.+|.++|++|++.. .||++..
T Consensus 83 f~~d~~~Lni~~~~--~~~raTe--~i~~~~~~i~~L~~kG~aY~~~~~~~~~VYFdv~ 137 (384)
T PRK12418 83 FREDMEALRVLPPR--DYVGAVE--SIPEVVELVEKLLASGAAYVVDDEEYPDVYFSVD 137 (384)
T ss_pred HHHHHHHhCCCCCC--ccccCCC--CHHHHHHHHHHHHHCCCEEEeCCCCCccEEEecC
Confidence 9999999997 555 6677766 48999999999999999999987 6887654
No 50
>TIGR03447 mycothiol_MshC cysteine--1-D-myo-inosityl 2-amino-2-deoxy-alpha-D-glucopyranoside ligase. Members of this protein family are MshC, l-cysteine:1-D-myo-inosityl 2-amino-2-deoxy-alpha-D-glucopyranoside ligase, an enzyme that uses ATP to ligate a Cys residue to a mycothiol precursor molecule, in the second to last step in mycothiol biosynthesis. This enzyme shows considerable homology to Cys--tRNA ligases, and many instances are misannotated as such. Mycothiol is found in Mycobacterium tuberculosis, Corynebacterium glutamicum, Streptomyces coelicolor, and various other members of the Actinobacteria. Mycothiol is an analog to glutathione.
Probab=100.00 E-value=7.5e-36 Score=335.34 Aligned_cols=125 Identities=24% Similarity=0.290 Sum_probs=111.0
Q ss_pred CCCcEEEEcCCCCCCCCCCCCchhHHHHHHHHHHHHHHHcCCcccccccccccChHHHHHHHHhCCCchHHHHHHHHHHH
Q 002217 92 SKPKFYVLDMFPYPSGAGLHVGHPLGYTATDILARLKRMQGYNVLHPMGWDAFGLPAEQYAIETGTHPKITTLRNINRFR 171 (952)
Q Consensus 92 ~k~kf~i~~~~Pypng~~lHiGH~~~~~~~Di~~Ry~r~~G~~V~~~~G~D~~Glpie~~a~~~g~~~~~~~~~~~~~~~ 171 (952)
++-++|+|.+.|| +. +||||+++++..|+++||+|++||+|.|++|+|+||.+|+.+|++.|++++++++++++.|.
T Consensus 35 ~~v~~YvCGpTvY--~~-~HIGhart~V~~Dvl~R~lr~~G~~V~fV~nitD~dDKIi~~A~~~g~t~~ela~~y~~~f~ 111 (411)
T TIGR03447 35 PEAGMYVCGITPY--DA-THLGHAATYLTFDLVNRVWRDAGHRVHYVQNVTDVDDPLFERAERDGVDWRELGTSQIDLFR 111 (411)
T ss_pred CcceEEEeCCccC--CC-cccccchHHHHHHHHHHHHHhcCCceEEeeCCCchhHHHHHHHHHcCCCHHHHHHHHHHHHH
Confidence 4677888865555 77 99999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHcCCc-cccCCcccCCChhHHHHHHHHHHHHHHCCceeeecc----ccccCCC
Q 002217 172 TQLKSLGFS-YDWNREISTIEPAYYKWTQWIFLQLLKRGLAYQAEV----PVNWCPA 223 (952)
Q Consensus 172 ~~l~~lgi~-~Dw~~~~~T~~~~~~~~v~~~f~~L~~kGliy~~~~----~v~wc~~ 223 (952)
+.+++|||. +| .+.+|++. .+.++.++.+|+++|+||++.. .||++..
T Consensus 112 ~d~~~Lni~~~d--~~~RaTe~--i~~ii~~i~~L~~kG~aY~~~~~~~~~VYFdv~ 164 (411)
T TIGR03447 112 EDMEALRVLPPR--DYIGAVES--IDEVIEMVEKLLAAGAAYEVEGPEYPDVYFSIE 164 (411)
T ss_pred HHHHHcCCCCCC--cccCCCCC--HHHHHHHHHHHHHCCCEEecCCCCcCcEEEecc
Confidence 999999986 44 56666555 7999999999999999998865 5777653
No 51
>KOG1247 consensus Methionyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=5.6e-36 Score=319.76 Aligned_cols=444 Identities=21% Similarity=0.352 Sum_probs=320.7
Q ss_pred CCCcEEEEcCCCCCCCCCCCCchhHH-HHHHHHHHHHHHHcCCcccccccccccChHHHHHHHHhCCCchHHHHHHHHHH
Q 002217 92 SKPKFYVLDMFPYPSGAGLHVGHPLG-YTATDILARLKRMQGYNVLHPMGWDAFGLPAEQYAIETGTHPKITTLRNINRF 170 (952)
Q Consensus 92 ~k~kf~i~~~~Pypng~~lHiGH~~~-~~~~Di~~Ry~r~~G~~V~~~~G~D~~Glpie~~a~~~g~~~~~~~~~~~~~~ 170 (952)
++..-+|+++-||.|.. +|+|++.+ .+.+||+|||.+.+|++.++++|+|+.|..+|.+|.+.|..|+++|+++...+
T Consensus 12 n~rnilitsalpyvnnv-phlgNIIg~vlsAdV~Aryc~~r~~~~~yicGTDEYgtatetkaleeg~tP~elcdKyh~ih 90 (567)
T KOG1247|consen 12 NERNILITSALPYVNNV-PHLGNIIGSVLSADVFARYCPLRGPNTLYICGTDEYGTATETKALEEGLTPQELCDKYHGIH 90 (567)
T ss_pred Cccceeeecccceeccc-ccccceeeEEeehhhhcccccCCCCceEEeccccccchhhHHHHHHccCCHHHHHHhcchhH
Confidence 45567899999999998 99999999 66799999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHcCCccccCCcccCCChhHHHHHHHHHHHHHHCCceeeeccccccCCCCCcccCchhh-----------------
Q 002217 171 RTQLKSLGFSYDWNREISTIEPAYYKWTQWIFLQLLKRGLAYQAEVPVNWCPALGTVLANEEV----------------- 233 (952)
Q Consensus 171 ~~~l~~lgi~~Dw~~~~~T~~~~~~~~v~~~f~~L~~kGliy~~~~~v~wc~~~~t~ls~~Ev----------------- 233 (952)
+..+.-++|++| .+.+|+.+...+.+|.+|.+|+++|+..+..-.+.||+.|++.|++..|
T Consensus 91 k~vy~Wf~IdfD--~fgrtTT~~qT~i~Q~iF~kl~~ng~~se~tv~qLyC~vc~~fladr~veg~cp~C~yd~ARGDqc 168 (567)
T KOG1247|consen 91 KVVYDWFKIDFD--EFGRTTTKTQTEICQDIFSKLYDNGYLSEQTVKQLYCEVCDTFLADRFVEGKCPFCGYDDARGDQC 168 (567)
T ss_pred HHHHHhhccccc--ccCcccCcchhHHHHHHhhchhhcCCcccceeeeEEehhhcccccchhhhccCCCCCCccccchhh
Confidence 999999999777 8999999999999999999999999999999999999999888876555
Q ss_pred ------------ccCccccCCCCeEEeeccccchhhhhhhhHhhccCCCC----CCchHHHHHHHhhhccCCCceEEEEE
Q 002217 234 ------------VDGVSERGGHPVIRKPMRQWMLKITEYADRLLDDLDDL----DWPESVKEMQRNWIGRSEGAEMDFRV 297 (952)
Q Consensus 234 ------------~~~~~~~~~~~~~~~~~~~~~~~i~~y~~~l~~~l~~~----~~p~~~~~~~~~~i~~s~~~~v~f~~ 297 (952)
.+++|.+|....+.+...+.||.+.++.++|.+++... +|..+.+.+
T Consensus 169 d~cG~l~N~~el~~pkc~ic~~~p~~~~t~h~Fl~L~kl~~~lee~~~~~~~~~~WS~Na~~i----------------- 231 (567)
T KOG1247|consen 169 DKCGKLVNAAELKIPKCKICQAGPVVRQTQHLFLSLDKLEPRLEEWLRRTLVEGDWSQNAQNI----------------- 231 (567)
T ss_pred hhhhhhcCHHHhcCcchheeccCCeeeeeeEEEEEhHHhHHHHHHHHHhccccCCCccchHHH-----------------
Confidence 34556666666666777778888877777766554310 022111111
Q ss_pred ecCCCCccCcEEEEecCCcchhccccEEEECCCCccchhhccccchHHHHHHHHHHhccchhhHhhhhhcccccccceEE
Q 002217 298 LDSDGQERDIKITVYTTRPDTIFGATYLVVAPEHPLLSSLVSTTQSQNIEEYKNLASRKSDLERTELQKEKTGVFSGCYA 377 (952)
Q Consensus 298 ~~~~~~~~~~~i~i~TT~P~Tl~g~~~v~v~p~~~y~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~l~g~~~ 377 (952)
T Consensus 232 -------------------------------------------------------------------------------- 231 (567)
T KOG1247|consen 232 -------------------------------------------------------------------------------- 231 (567)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred ecCCCCCcccEEecCcccCCCCCCceEecCCCChhhHHHHHHcCCceeeeecCCCCCCccccccccccceEEcccCcccc
Q 002217 378 RNPASGEAIPIWVADYVLGSYGTGAIMAVPAHDTRDHEFALKFDISIHSVVMPDDESSSQSEKAYTGEGLIVNSSNLISG 457 (952)
Q Consensus 378 ~~P~~~~~~pv~~~~~V~~~~GTG~V~~~Pah~~~D~~~~~~~~L~i~~vv~~~~~~~~~~~~~y~~~g~l~~~~~~~~~ 457 (952)
T Consensus 232 -------------------------------------------------------------------------------- 231 (567)
T KOG1247|consen 232 -------------------------------------------------------------------------------- 231 (567)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred cccCCCCHHHHHHHHHHHHHHcCCCcceecccCCceeecccCCCCcccCceEeCCCCceeecCCCCcCCCCCcccccCCC
Q 002217 458 LDINGLSCQEATSKVIEWAEKTGNGKKKVNYKLRDWLFARQRYWGEPIPVVFLDGTGETVPLHEAELPLTLPELDDFTPT 537 (952)
Q Consensus 458 ~~~~gl~~~~a~~~ii~~l~~~~~~~~~~~~~l~DW~ISRQR~WG~PIPv~~~~~~~~~~~~~~~~l~v~lp~~~~~~~~ 537 (952)
...|+.. .++.-||+|..-||+|+|. ++ |
T Consensus 232 --------------t~sWlk~----------gl~pRCiTRDLkWGtpVPl---e~---------------------f--- 260 (567)
T KOG1247|consen 232 --------------TRSWLKD----------GLKPRCITRDLKWGTPVPL---EK---------------------F--- 260 (567)
T ss_pred --------------HHHHHHc----------cccccccccccccCCCcCh---hh---------------------h---
Confidence 2234432 2677899999999999996 21 1
Q ss_pred CCCCCCCccccccccccccCCCCCccccCCCccccccccchhheecCCCCchhHhhhhhhhcCC-C--ceeE-ecCchhh
Q 002217 538 GTGEPPLSKAVSWVQTTEHSSGKPARRETSTMPQWAGSCWYYLRFMDPKNSKELVDKTKERYWS-P--VDVY-VGGAEHA 613 (952)
Q Consensus 538 G~~~~~l~~~~~w~~~~~~~~g~~~~re~d~lD~WfdSswy~~~~~~p~~~~~~~~~~~~~~w~-P--vDly-v~G~D~~ 613 (952)
+.-|+.+|||...-|+.... ... .+.++.|- | |++| .-|+|..
T Consensus 261 ---------------------------k~KVfYVWFDA~IGYlsit~-----~yt-~ew~kWwknpE~v~LyqFmgKDNV 307 (567)
T KOG1247|consen 261 ---------------------------KDKVFYVWFDAPIGYLSITK-----NYT-DEWEKWWKNPENVELYQFMGKDNV 307 (567)
T ss_pred ---------------------------cccEEEEEEcCcceEEEeeh-----hhh-HHHHHHhcCHhhhhHHHHhccCCC
Confidence 11378899998766665431 111 11222221 1 3332 3466654
Q ss_pred HHHHHHHHHHHHHHHHhcCcCCCCcchhhhhhceecccc-ceeEEecCCCccccCCCCCcccccccccCccccccccCCc
Q 002217 614 VLHLLYARFWHKVLYDIGVVSTKEPFKCVINQGIILGEM-QYMVCKDVDGSYISADSTDTLGEYEQESIPEEKVMKSGDF 692 (952)
Q Consensus 614 ~~HLly~Rfw~~~L~~~~~~~~~~PFk~l~~~G~vl~~~-~y~~~~d~~g~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~ 692 (952)
||..|+.-++.+|.- .|++.+. +. .+ .
T Consensus 308 ------------------------pFHtviFP~s~lgt~en~t~v~~----------l~-----aT-------------e 335 (567)
T KOG1247|consen 308 ------------------------PFHTVIFPCSQLGTEENYTVVHH----------LS-----AT-------------E 335 (567)
T ss_pred ------------------------cceeeecchhhhcCCCCchhhee----------ec-----hh-------------h
Confidence 444444444333320 0110000 00 00 1
Q ss_pred eeeccCcchhhcccccccccCCCCCCChhhHHhh-hCchhhhhhhhhcCCCCCCCCCChhhHH---------HHHHHHHH
Q 002217 693 FVMKDNPNIRLIARAHKMSKSRGNVVNPDDVVTE-YGADSLRLYEMFMGPFRDSKTWNTSGIE---------GVHRFLGR 762 (952)
Q Consensus 693 ~vl~~~~~~~v~~~g~KMSKSkGNvV~P~eii~~-YGaDalRl~ll~~~~~~~~~~~s~~~i~---------~~~r~l~~ 762 (952)
|+-- +..|.|||+|-+|--.++-+. -++|+.||||++..|..+|..|+++.+. ...+|++|
T Consensus 336 YLny---------E~gKFSKSrgvGvFG~~aqd~gi~~~vWRyYLl~~RPEssDs~Fsw~df~~k~nseLl~NLGNFvNR 406 (567)
T KOG1247|consen 336 YLNY---------EDGKFSKSRGVGVFGNDAQDTGIPASVWRYYLLYIRPESSDSAFSWDDFVLKVNSELLNNLGNFVNR 406 (567)
T ss_pred hhcc---------ccCcccccccccccccccccCCCCHHHHHHHHhhccCcccCCcCcHHHHHHHhhHHHHHHHHHHHHH
Confidence 1111 247999999999998888774 8999999999999999889889876654 34467777
Q ss_pred HHHHHhccCCCCCCCCCCccCCCCCChHHHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHhcccc---------h-
Q 002217 763 MWRLIVGSSLPDGTFKGGTVVNDEEPTLEQLCTLHKCIAKVTEEIEGTRFNTGISAMMEFINAAYKWEK---------H- 832 (952)
Q Consensus 763 l~~~~~~~~~~~~~~~~~~~~~~~~~d~~~l~~l~~~i~~v~~~~e~~~f~~ai~~l~~f~~~~~~~~~---------~- 832 (952)
+..|+.... ++.-+.. .....+...++.++++..+..++||.-+...|++.+|+.....|.+.+ .
T Consensus 407 ~l~fv~~~~---~g~Vp~~--~~~~~~~~~~~dv~~~~~~y~~~me~vklr~~l~~~m~is~~GNqylQ~~~~~k~~~~~ 481 (567)
T KOG1247|consen 407 VLKFVAAKY---NGVVPEM--ELTSGDKKLLEDVNELLAKYVAAMEKVKLREALKTAMEISRRGNQYLQENTDNKLYEES 481 (567)
T ss_pred HHHHHHHhh---CCcccce--eecCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHhcccccchhhhc
Confidence 777763210 1111111 122336778899999999999999999999999999999987665421 1
Q ss_pred ----------hHHHHHHHHHHhCCcchhHHHHHHHHcCCCCCc
Q 002217 833 ----------PRKIIEPFILLLAPYAPHMSEELWFRLGHSNSL 865 (952)
Q Consensus 833 ----------~~~vL~~l~~LLaPf~P~iaEElw~~L~~~~sV 865 (952)
...++..+..||+||||.++.+|..+|+....+
T Consensus 482 r~r~~~vi~~a~nii~lvs~ll~P~mP~~s~~I~kqlnlp~~~ 524 (567)
T KOG1247|consen 482 RQRAGTVIGLAANIIYLVSVLLYPYMPTTSAEILKQLNLPETL 524 (567)
T ss_pred ccccceeeehhhHHHHHHHHHhccccccchHHHHHHhCCcccc
Confidence 125777888999999999999999999876443
No 52
>PRK14535 cysS cysteinyl-tRNA synthetase; Provisional
Probab=100.00 E-value=2.2e-35 Score=342.82 Aligned_cols=128 Identities=20% Similarity=0.149 Sum_probs=117.3
Q ss_pred CCCCcEEEEcCCCCCCCCCCCCchhHHHHHHHHHHHHHHHcCCcccccccccccChHHHHHHHHhCCCchHHHHHHHHHH
Q 002217 91 TSKPKFYVLDMFPYPSGAGLHVGHPLGYTATDILARLKRMQGYNVLHPMGWDAFGLPAEQYAIETGTHPKITTLRNINRF 170 (952)
Q Consensus 91 ~~k~kf~i~~~~Pypng~~lHiGH~~~~~~~Di~~Ry~r~~G~~V~~~~G~D~~Glpie~~a~~~g~~~~~~~~~~~~~~ 170 (952)
+++-+.|+| .|++++. +||||+++++..|+++||+|++||+|.|++|+|+||.+|..+|.+.|+++.++++++++.|
T Consensus 246 ~~~V~mYvC--GPTVYd~-~HIGHaRt~V~~DVL~R~Lr~~Gy~V~fV~NiTD~DDKII~~A~e~G~sp~ela~~y~~~F 322 (699)
T PRK14535 246 PENVRMYVC--GMTVYDY-CHLGHARVMVVFDMIARWLRECGYPLTYVRNITDIDDKIIARAAENGETIGELTARFIQAM 322 (699)
T ss_pred CCceEEEec--CCcCCCC-CcccchhHHHHHHHHHHHHHHcCCceEEEeCCcccchHHHHHHHHcCCCHHHHHHHHHHHH
Confidence 455566765 6889998 9999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHcCCccccCCcccCCChhHHHHHHHHHHHHHHCCceeeec-cccccCCCC
Q 002217 171 RTQLKSLGFSYDWNREISTIEPAYYKWTQWIFLQLLKRGLAYQAE-VPVNWCPAL 224 (952)
Q Consensus 171 ~~~l~~lgi~~Dw~~~~~T~~~~~~~~v~~~f~~L~~kGliy~~~-~~v~wc~~~ 224 (952)
.+.+++|||..+ . +.|...+|...++.++.+|.++|++|++. ..||||..+
T Consensus 323 ~~d~~~LnI~~p--~-~~praTeHI~~ii~lI~~LidkG~AYe~~~gsVYFdV~~ 374 (699)
T PRK14535 323 HEDADALGVLRP--D-IEPKATENIPQMIAMIETLIQNGKAYPAANGDVYYAVRE 374 (699)
T ss_pred HHHHHHcCCCCC--c-EeeCccchHHHHHHHHHHHHHCCCEEEeCCCCEEEeccc
Confidence 999999999988 3 57777899999999999999999999874 479999874
No 53
>PLN02946 cysteine-tRNA ligase
Probab=100.00 E-value=1.3e-35 Score=344.38 Aligned_cols=128 Identities=20% Similarity=0.186 Sum_probs=119.9
Q ss_pred CCCCCcEEEEcCCCCCCCCCCCCchhHHHHHHHHHHHHHHHcCCcccccccccccChHHHHHHHHhCCCchHHHHHHHHH
Q 002217 90 DTSKPKFYVLDMFPYPSGAGLHVGHPLGYTATDILARLKRMQGYNVLHPMGWDAFGLPAEQYAIETGTHPKITTLRNINR 169 (952)
Q Consensus 90 ~~~k~kf~i~~~~Pypng~~lHiGH~~~~~~~Di~~Ry~r~~G~~V~~~~G~D~~Glpie~~a~~~g~~~~~~~~~~~~~ 169 (952)
++++-+.|+| -|++++. +||||+++++..|+++||+|++||+|.|++|+|+||.+|..+|.+.|+++.++++++++.
T Consensus 77 ~~~~v~~Y~C--GpTvYd~-~HIGhaR~~V~~Dvl~R~Lr~~Gy~V~~V~niTDiDDKIi~~A~~~g~~~~ela~~y~~~ 153 (557)
T PLN02946 77 VEGKVGMYVC--GVTAYDL-SHIGHARVYVTFDVLYRYLKHLGYEVRYVRNFTDVDDKIIARANELGEDPISLSRRYCEE 153 (557)
T ss_pred CCCceeEEEe--CCccCCC-CccccchhhHHHHHHHHHHHhcCCcEEEEECCCCccCHHHHHHHHcCCCHHHHHHHHHHH
Confidence 4566777876 5899998 999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHcCCccccCCcccCCChhHHHHHHHHHHHHHHCCceeeeccccccCCC
Q 002217 170 FRTQLKSLGFSYDWNREISTIEPAYYKWTQWIFLQLLKRGLAYQAEVPVNWCPA 223 (952)
Q Consensus 170 ~~~~l~~lgi~~Dw~~~~~T~~~~~~~~v~~~f~~L~~kGliy~~~~~v~wc~~ 223 (952)
|.+.+++|||. + .++.|...+|...++.++.+|+++|++|.+...||||..
T Consensus 154 f~~d~~~LnI~-~--p~~~pratehi~~ii~~i~~Li~kG~aY~~~g~VYFdv~ 204 (557)
T PLN02946 154 FLSDMAYLHCL-P--PSVEPRVSDHIPQIIDMIKQILDNGCAYRVDGDVYFSVD 204 (557)
T ss_pred HHHHHHHCCCC-C--CCeecCcchhHHHHHHHHHHHHHCCCEEEECCeEEEecC
Confidence 99999999997 3 578888899999999999999999999999999999875
No 54
>PRK14536 cysS cysteinyl-tRNA synthetase; Provisional
Probab=100.00 E-value=2.2e-34 Score=331.20 Aligned_cols=128 Identities=20% Similarity=0.138 Sum_probs=117.5
Q ss_pred CCCCCcEEEEcCCCCCCCCCCCCchhHHHHHHHHHHHHHHHcCCcccccc----------cccccChHHHHHHHHhCCCc
Q 002217 90 DTSKPKFYVLDMFPYPSGAGLHVGHPLGYTATDILARLKRMQGYNVLHPM----------GWDAFGLPAEQYAIETGTHP 159 (952)
Q Consensus 90 ~~~k~kf~i~~~~Pypng~~lHiGH~~~~~~~Di~~Ry~r~~G~~V~~~~----------G~D~~Glpie~~a~~~g~~~ 159 (952)
++++-+.|+| -|++++. +||||+++|+..|+++||+|++||+|.|++ |.|+||.+|..+|.+.|+++
T Consensus 20 ~~~~v~mYvC--GpTvy~~-~HiGhar~~v~~Dvl~R~l~~~G~~V~~v~NiTDv~hl~~~~De~ddKii~~A~~~g~~~ 96 (490)
T PRK14536 20 EHGHVRLYGC--GPTVYNY-AHIGNLRTYVFQDTLRRTLHFLGYRVTHVMNITDVGHLTDDADSGEDKMVKSAQEHGKSV 96 (490)
T ss_pred CCCceEEEee--CCccCCC-cccchhHHHHHHHHHHHHHHhcCCceEEEEeeccccccccCCcCCChHHHHHHHHcCCCH
Confidence 3456667776 6999998 999999999999999999999999999997 88999999999999999999
Q ss_pred hHHHHHHHHHHHHHHHHcCCccccCCcccCCChhHHHHHHHHHHHHHHCCceeeeccccccCCC
Q 002217 160 KITTLRNINRFRTQLKSLGFSYDWNREISTIEPAYYKWTQWIFLQLLKRGLAYQAEVPVNWCPA 223 (952)
Q Consensus 160 ~~~~~~~~~~~~~~l~~lgi~~Dw~~~~~T~~~~~~~~v~~~f~~L~~kGliy~~~~~v~wc~~ 223 (952)
.++++++++.|.+.+++|||..+ . +.|..++|...++.++.+|+++|++|++...||||+.
T Consensus 97 ~e~a~~~~~~f~~d~~~Lni~~~--~-~~~rat~hi~~ii~~i~~L~~kG~aY~~~~~vyFdv~ 157 (490)
T PRK14536 97 LEIAAHYTAAFFRDTARLNIERP--S-IVCNATEHIQDMIALIKRLEARGHTYCAGGNVYFDIR 157 (490)
T ss_pred HHHHHHHHHHHHHHHHHcCCCCC--c-eecCcccHHHHHHHHHHHHHHCCCEEEECCeEEEeCC
Confidence 99999999999999999999886 3 3367799999999999999999999999999999984
No 55
>PRK14534 cysS cysteinyl-tRNA synthetase; Provisional
Probab=99.98 E-value=1.2e-31 Score=306.91 Aligned_cols=126 Identities=21% Similarity=0.156 Sum_probs=114.1
Q ss_pred CCcEEEEcCCCCCCCCCCCCchhHHHHHHHHHHHHHHHcCCcccc---------cccc-cccChHHHHHHHHhCCCchHH
Q 002217 93 KPKFYVLDMFPYPSGAGLHVGHPLGYTATDILARLKRMQGYNVLH---------PMGW-DAFGLPAEQYAIETGTHPKIT 162 (952)
Q Consensus 93 k~kf~i~~~~Pypng~~lHiGH~~~~~~~Di~~Ry~r~~G~~V~~---------~~G~-D~~Glpie~~a~~~g~~~~~~ 162 (952)
+-+.|+| -|+++.. +||||+++++..|+++||++++||+|.| ++|. |+||.+|+.+|.+.|+++.++
T Consensus 21 ~v~mY~C--GpTVYd~-~HiGh~r~~v~~Dvl~R~l~~~G~~V~~v~NiTDIghltg~~D~gddKIi~~A~~~g~~~~e~ 97 (481)
T PRK14534 21 DVKVYAC--GPTVYNY-AHIGNFRTYIFEDLLIKSLRLLKYNVNYAMNITDIGHLTGDFDDGEDKVVKAARERGLTVYEI 97 (481)
T ss_pred ceEEEeC--CCCCCCC-CCccchhHHHHHHHHHHHHHHcCCceEEEEeccccccccCCccCCCcHHHHHHHHcCCCHHHH
Confidence 4556664 6889998 9999999999999999999999999999 6777 555888999999999999999
Q ss_pred HHHHHHHHHHHHHHcCCccccCCcccCCChhHHHHHHHHHHHHHHCCceeeeccccccCCCC
Q 002217 163 TLRNINRFRTQLKSLGFSYDWNREISTIEPAYYKWTQWIFLQLLKRGLAYQAEVPVNWCPAL 224 (952)
Q Consensus 163 ~~~~~~~~~~~l~~lgi~~Dw~~~~~T~~~~~~~~v~~~f~~L~~kGliy~~~~~v~wc~~~ 224 (952)
++++++.|.+.+++|||..| .++.| .++|...++.++.+|.++|++|.....||||+.+
T Consensus 98 a~~~~~~f~~d~~~Lni~~~--~~~p~-atehi~~~i~~i~~L~~kG~aY~~~~~vyFdv~~ 156 (481)
T PRK14534 98 SRFFTEAFFDDCKKLNIVYP--DKVLV-ASEYIPIMIEVVKVLEENGFTYFVNGNVYFDTSC 156 (481)
T ss_pred HHHHHHHHHHHHHHcCCCCC--ceecC-ccchHHHHHHHHHHHHHCCCEEEECCeEEEeccc
Confidence 99999999999999999988 55555 6799999999999999999999999999999876
No 56
>COG0215 CysS Cysteinyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=99.97 E-value=4.4e-30 Score=287.36 Aligned_cols=126 Identities=25% Similarity=0.241 Sum_probs=113.7
Q ss_pred CCCCcEEEEcCCCCCCCCCCCCchhHHHHHHHHHHHHHHHcCCcccccccccccChHHHHHHHHhCCCchHHHHHHHHHH
Q 002217 91 TSKPKFYVLDMFPYPSGAGLHVGHPLGYTATDILARLKRMQGYNVLHPMGWDAFGLPAEQYAIETGTHPKITTLRNINRF 170 (952)
Q Consensus 91 ~~k~kf~i~~~~Pypng~~lHiGH~~~~~~~Di~~Ry~r~~G~~V~~~~G~D~~Glpie~~a~~~g~~~~~~~~~~~~~~ 170 (952)
+++-+.|+| -|+++.. .||||+|+++.-|++.||++.+||.|.|+..+.+-..+|...|.+.|.++.++++++++.|
T Consensus 20 ~~~V~mYvC--GpTVYd~-~HIGhaRt~V~fDvl~R~L~~~Gy~V~yV~NiTDIDDKIi~rA~~~g~~~~ev~~~~i~~f 96 (464)
T COG0215 20 PGKVKMYVC--GPTVYDY-AHIGHARTYVVFDVLRRYLRYLGYKVTYVRNITDIDDKIINRAREEGLSIREVAERYIAAF 96 (464)
T ss_pred CCeEEEEec--CCccCCc-cccccCcceehHHHHHHHHHHhCCeEEEEeccccccHHHHHHHHHhCCCHHHHHHHHHHHH
Confidence 455677776 5889997 9999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHcCCc-cccCCcccCCChhHHHHHHHHHHHHHHCCceeee-ccccccCCC
Q 002217 171 RTQLKSLGFS-YDWNREISTIEPAYYKWTQWIFLQLLKRGLAYQA-EVPVNWCPA 223 (952)
Q Consensus 171 ~~~l~~lgi~-~Dw~~~~~T~~~~~~~~v~~~f~~L~~kGliy~~-~~~v~wc~~ 223 (952)
.+++++|||. .| ..+..| +|...+..+..+|.+||++|.. ...|||+..
T Consensus 97 ~~D~~aL~v~~p~-~~PraT---e~I~~iI~~I~~LiekG~AY~~~~G~VYFdv~ 147 (464)
T COG0215 97 FEDMDALNVLPPD-IEPRAT---EHIDEIIEFIEKLIEKGYAYVADDGDVYFDVS 147 (464)
T ss_pred HHHHHHhCCCCCc-ccCcHh---hCHHHHHHHHHHHHHCCceEEecCCcEEEecc
Confidence 9999999995 34 245555 9999999999999999999998 568888765
No 57
>cd00672 CysRS_core catalytic core domain of cysteinyl tRNA synthetase. Cysteinyl tRNA synthetase (CysRS) catalytic core domain. This class I enzyme is a monomer which aminoacylates the 2'-OH of the nucleotide at the 3' of the appropriate tRNA. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. It contains the characteristic class I HIGH and KMSKS motifs, which are involved in ATP binding.
Probab=99.96 E-value=1.3e-29 Score=264.73 Aligned_cols=94 Identities=22% Similarity=0.180 Sum_probs=87.1
Q ss_pred CCCCcEEEEcCCCCCCCCCCCCchhHHHHHHHHHHHHHHHcCCcccccccccccChHHHHHHHHhCCCchHHHHHHHHHH
Q 002217 91 TSKPKFYVLDMFPYPSGAGLHVGHPLGYTATDILARLKRMQGYNVLHPMGWDAFGLPAEQYAIETGTHPKITTLRNINRF 170 (952)
Q Consensus 91 ~~k~kf~i~~~~Pypng~~lHiGH~~~~~~~Di~~Ry~r~~G~~V~~~~G~D~~Glpie~~a~~~g~~~~~~~~~~~~~~ 170 (952)
+++.++|++. |+|+|. +||||+++|+++|+++||+||+|++|+|++|+|+||+||+.+|++.|++|+++++++.+.|
T Consensus 18 ~~~~~~y~~g--pt~y~~-~HiGH~r~~v~~Dvl~R~lr~~G~~V~~~~g~dd~g~ki~~~A~~~g~~p~e~~~~~~~~f 94 (213)
T cd00672 18 PGLVTMYVCG--PTVYDY-AHIGHARTYVVFDVLRRYLEDLGYKVRYVQNITDIDDKIIKRAREEGLSWKEVADYYTKEF 94 (213)
T ss_pred CCCceEEEeC--CccCCC-cccccchhHHHHHHHHHHHHhcCCeeEEEeecCCCCCHHHHHHHHcCCCHHHHHHHHHHHH
Confidence 4677898874 566687 9999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHcCCcc-ccCCcccC
Q 002217 171 RTQLKSLGFSY-DWNREIST 189 (952)
Q Consensus 171 ~~~l~~lgi~~-Dw~~~~~T 189 (952)
++++++|||+. | .+.+|
T Consensus 95 ~~~~~~l~i~~~d--~~~rt 112 (213)
T cd00672 95 FEDMKALNVLPPD--VVPRV 112 (213)
T ss_pred HHHHHHcCCCCCC--cceee
Confidence 99999999988 5 67777
No 58
>PF01406 tRNA-synt_1e: tRNA synthetases class I (C) catalytic domain; InterPro: IPR015803 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. Cysteinyl-tRNA synthetase (6.1.1.16 from EC) is an alpha monomer and belongs to class Ia.; GO: 0000166 nucleotide binding, 0004817 cysteine-tRNA ligase activity, 0005524 ATP binding, 0006423 cysteinyl-tRNA aminoacylation, 0005737 cytoplasm; PDB: 3SP1_B 3TQO_A 3C8Z_B 1LI5_B 1LI7_B 1U0B_B.
Probab=99.95 E-value=6.1e-29 Score=265.99 Aligned_cols=128 Identities=23% Similarity=0.248 Sum_probs=107.2
Q ss_pred CCCCCcEEEEcCCCCCCCCCCCCchhHHHHHHHHHHHHHHHcCCcccccccccccChHHHHHHHHhCCCchHHHHHHHHH
Q 002217 90 DTSKPKFYVLDMFPYPSGAGLHVGHPLGYTATDILARLKRMQGYNVLHPMGWDAFGLPAEQYAIETGTHPKITTLRNINR 169 (952)
Q Consensus 90 ~~~k~kf~i~~~~Pypng~~lHiGH~~~~~~~Di~~Ry~r~~G~~V~~~~G~D~~Glpie~~a~~~g~~~~~~~~~~~~~ 169 (952)
++++-+.|+| -|+++.. +||||+|+|+..|++.||++..||+|.+++++.+...+|..+|.+.|+++.+++.++.+.
T Consensus 5 ~~~~v~~Y~C--GPTVYd~-~HiGhaR~~v~~D~l~R~L~~~g~~V~~V~NiTDiDDKii~~A~~~g~~~~ela~~y~~~ 81 (300)
T PF01406_consen 5 NPGKVRMYVC--GPTVYDY-AHIGHARTYVFFDVLRRYLEYLGYDVTYVMNITDIDDKIIKRAREEGVSPQELARRYEEE 81 (300)
T ss_dssp CTTEEEEEEE--EEBTTS---BHHHHHHHHHHHHHHHHHHHTT-EEEEEEEEB-SSHHHHHHHHHTTS-HHHHHHHHHHH
T ss_pred CCCeEEEEcC--CCCCCCC-CCCcceeeeeeHHHHHHHHHHcCCeEEEEEeccccchHHHHHHHhccCCHHHHHHHHHHH
Confidence 3455667776 5888887 999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHcCCccccCCcccCCChhHHHHHHHHHHHHHHCCceeeec-cccccCCC
Q 002217 170 FRTQLKSLGFSYDWNREISTIEPAYYKWTQWIFLQLLKRGLAYQAE-VPVNWCPA 223 (952)
Q Consensus 170 ~~~~l~~lgi~~Dw~~~~~T~~~~~~~~v~~~f~~L~~kGliy~~~-~~v~wc~~ 223 (952)
|.+++++|||.-....+..| +|...+..+..+|.++|++|... ..||++..
T Consensus 82 f~~dm~~Lnv~~p~~~prat---e~i~~ii~~i~~Li~~G~AY~~~~g~VYFdv~ 133 (300)
T PF01406_consen 82 FFEDMKALNVLPPDHYPRAT---EHIPEIIELIEKLIDKGHAYESEDGSVYFDVS 133 (300)
T ss_dssp HHHHHHHTT----SEEEEGG---GGHHHHHHHHHHHHHTTSEEEETTSEEEE-CC
T ss_pred HHHHHHHcCCCCCccccchh---ccHHHHHHHHHHHHHCCCeEEcCCCcEEEeec
Confidence 99999999998764444455 99999999999999999999998 88988764
No 59
>PRK01611 argS arginyl-tRNA synthetase; Reviewed
Probab=99.93 E-value=3e-24 Score=253.96 Aligned_cols=120 Identities=23% Similarity=0.278 Sum_probs=109.7
Q ss_pred CCCcEEEEcCCCCCCCCCCCCchhHHHHHHHHHHHHHHHcCCcccccccccccChHHHHHHHHhCCCchHHHHHHHHHHH
Q 002217 92 SKPKFYVLDMFPYPSGAGLHVGHPLGYTATDILARLKRMQGYNVLHPMGWDAFGLPAEQYAIETGTHPKITTLRNINRFR 171 (952)
Q Consensus 92 ~k~kf~i~~~~Pypng~~lHiGH~~~~~~~Di~~Ry~r~~G~~V~~~~G~D~~Glpie~~a~~~g~~~~~~~~~~~~~~~ 171 (952)
.++++.|....|+|+|+ +||||+|+.+++|+++|++|+.||+|.++.|+|++|.++...+.+.+..++++++.+.+.|+
T Consensus 109 ~~~~v~Ie~~spnp~g~-lHiGH~R~~iigD~laR~lr~~G~~V~~~~~i~D~G~qi~~~a~~~~~~~~~~~~~~~~~~~ 187 (507)
T PRK01611 109 KGKKVVVEYVSANPTGP-LHVGHLRSAVIGDALARILEFAGYDVTREYYVNDAGTQIGMLIASLELLWRKAVDISLDEIK 187 (507)
T ss_pred CCCEEEEEecCCCCCCC-CcCCchHHHHHHHHHHHHHHHcCCcEEEEeeeCCccHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45678888889999998 99999999999999999999999999999999999999998888877778889999999999
Q ss_pred HHHHHcCCccccCCcccCCChhHHHHHHHHHHHHHHCCcee-ee
Q 002217 172 TQLKSLGFSYDWNREISTIEPAYYKWTQWIFLQLLKRGLAY-QA 214 (952)
Q Consensus 172 ~~l~~lgi~~Dw~~~~~T~~~~~~~~v~~~f~~L~~kGliy-~~ 214 (952)
+++++|||.+| .+..+.+..+...+++++.+|.++|++| +.
T Consensus 188 ~~l~~LgI~~D--~~~~es~~~~~~~~~~~~~~L~~~G~~y~~~ 229 (507)
T PRK01611 188 EDLDRLGVHFD--VWFSESELYYNGKVDEVVEDLKEKGLLYVES 229 (507)
T ss_pred HHHHHcCCeee--EEeecCcchhcchHHHHHHHHHHCCCEEEee
Confidence 99999999998 6677777777788999999999999999 54
No 60
>cd00674 LysRS_core_class_I catalytic core domain of class I lysyl tRNA synthetase. Class I lysyl tRNA synthetase (LysRS) catalytic core domain. This class I enzyme is a monomer which aminoacylates the 2'-OH of the nucleotide at the 3' of the appropriate tRNA. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. It contains the characteristic class I HIGH and KMSKS motifs, which are involved in ATP binding. The class I LysRS is found only in archaea and some bacteria and has evolved separately from class II LysRS, as the two do not share structural or sequence similarity.
Probab=99.93 E-value=5.5e-25 Score=244.63 Aligned_cols=116 Identities=23% Similarity=0.303 Sum_probs=98.3
Q ss_pred CCcEEEEcCCCCCCCCCCCCchhHHHHHHHHHHHHHHHcCCccccccccccc------------------ChHHHHHHHH
Q 002217 93 KPKFYVLDMFPYPSGAGLHVGHPLGYTATDILARLKRMQGYNVLHPMGWDAF------------------GLPAEQYAIE 154 (952)
Q Consensus 93 k~kf~i~~~~Pypng~~lHiGH~~~~~~~Di~~Ry~r~~G~~V~~~~G~D~~------------------Glpie~~a~~ 154 (952)
+++++|.+|+ ||||. +||||++.++.+|+++||+|++|++|.+++|+|+| |.|+...+..
T Consensus 18 ~~~~~v~tgi-~psG~-~HIG~~~e~i~~D~i~R~lr~~G~~v~~v~~~Dd~d~lrKvp~~l~~~~~~~~G~pi~~ip~p 95 (353)
T cd00674 18 KEKYVVASGI-SPSGH-IHIGNFREVITADLVARALRDLGFEVRLIYSWDDYDRLRKVPPNVPESYEQYIGMPLSSVPDP 95 (353)
T ss_pred CCeEEEecCC-CCCCC-cccCccHHHHHHHHHHHHHHHcCCCEEEEEEEcCCCcccccccchhhHHHHhcCccchhchhh
Confidence 4568887776 59998 99999999999999999999999999999999999 6777777777
Q ss_pred hCCCchHHHHHHHHHHHHHHHHcCCccccCCcccCCChhHHHHHHHHHHHHHHCCceee
Q 002217 155 TGTHPKITTLRNINRFRTQLKSLGFSYDWNREISTIEPAYYKWTQWIFLQLLKRGLAYQ 213 (952)
Q Consensus 155 ~g~~~~~~~~~~~~~~~~~l~~lgi~~Dw~~~~~T~~~~~~~~v~~~f~~L~~kGliy~ 213 (952)
.|..+ ++++++.+.|++.|++|||++| ....|.....-...+.++..|.+++.|..
T Consensus 96 ~g~~~-~~~d~~~~~f~~~l~~lgi~~d--~~~~T~~y~~g~~~~~i~~~L~~~~~I~~ 151 (353)
T cd00674 96 FGCCE-SYAEHFERPFEESLEKLGIEVE--FISQSQMYKSGLYDENILIALEKRDEIMA 151 (353)
T ss_pred cCCCH-HHHHHHHHHHHHHHHHcCCeee--eeecCCchhhchHHHHHHHHHHHCChHHH
Confidence 77766 9999999999999999999998 34444445555788889999988877653
No 61
>KOG2007 consensus Cysteinyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=99.92 E-value=1.7e-24 Score=238.14 Aligned_cols=128 Identities=22% Similarity=0.280 Sum_probs=108.4
Q ss_pred CCCCCcEEEEcCCCCCCCCCCCCchhHHHHHHHHHHHHHH-HcCCcccccccccccChHHHHHHH--HhCCCchHHHH--
Q 002217 90 DTSKPKFYVLDMFPYPSGAGLHVGHPLGYTATDILARLKR-MQGYNVLHPMGWDAFGLPAEQYAI--ETGTHPKITTL-- 164 (952)
Q Consensus 90 ~~~k~kf~i~~~~Pypng~~lHiGH~~~~~~~Di~~Ry~r-~~G~~V~~~~G~D~~Glpie~~a~--~~g~~~~~~~~-- 164 (952)
+.++-.+|+| .|+++.. -|||||++|+--||+.|+++ ..||+|.|++++.+...+|...|. +.+..|..+.+
T Consensus 52 ~~~~v~wY~C--GpTvYD~-SHmGHArsYVsfDIlrRiL~dyfgy~V~~vmNiTDVDDKII~RAr~~~m~e~~~~l~~~F 128 (586)
T KOG2007|consen 52 NGNKVTWYIC--GPTVYDS-SHMGHARSYVSFDILRRILRDYFGYDVTFVMNITDVDDKIIKRARKEEMGEKPLSLSERF 128 (586)
T ss_pred CCCeEEEEEe--cCcccch-hhhhhhhhhhhHHHHHHHHHHHcCcceEEEecccchhHHHHHHhhhhhhccchhhHHHHH
Confidence 4456778887 5889987 89999999999999999999 899999999999999999999886 24445544443
Q ss_pred -HHHHHHHHHHHHcCCccccCCcccCCChhHHHHHHHHHHHHHHCCceeeeccccccCCC
Q 002217 165 -RNINRFRTQLKSLGFSYDWNREISTIEPAYYKWTQWIFLQLLKRGLAYQAEVPVNWCPA 223 (952)
Q Consensus 165 -~~~~~~~~~l~~lgi~~Dw~~~~~T~~~~~~~~v~~~f~~L~~kGliy~~~~~v~wc~~ 223 (952)
.+.++|.+++.+|++..- ...|.-.+|...+..+..++.++|+.|.....||++..
T Consensus 129 ~~~e~eF~~DM~~LnvLpP---tv~tRVSeyvp~II~fIqkIIdnG~aY~~dGsVYFdv~ 185 (586)
T KOG2007|consen 129 CYYEEEFLQDMAALNVLPP---TVQTRVSEYVPQIIKFIQKIIDNGYAYAVDGSVYFDVD 185 (586)
T ss_pred HHHHHHHHHHHHHhCCCCC---cccchhhhchHHHHHHHHHHHhCCceeeeCCcEEEecc
Confidence 466999999999999663 56666679999999999999999999999888888764
No 62
>PRK00750 lysK lysyl-tRNA synthetase; Reviewed
Probab=99.88 E-value=2.3e-22 Score=236.08 Aligned_cols=116 Identities=22% Similarity=0.155 Sum_probs=87.3
Q ss_pred CCcEEEEcCCCCCCCCCCCCchhHHHHHHHHHHHHHHHcCCcccccccccccC--------hHH-HHHHHHhCCC-----
Q 002217 93 KPKFYVLDMFPYPSGAGLHVGHPLGYTATDILARLKRMQGYNVLHPMGWDAFG--------LPA-EQYAIETGTH----- 158 (952)
Q Consensus 93 k~kf~i~~~~Pypng~~lHiGH~~~~~~~Di~~Ry~r~~G~~V~~~~G~D~~G--------lpi-e~~a~~~g~~----- 158 (952)
++.++|.+| +||||. +||||++.++.+|+++|++|++|++|.+++|+|+|| +|. +..+...|.+
T Consensus 22 ~~~~~~~~g-~~psG~-~HiG~~~e~~~~d~v~r~lr~~G~~v~~i~~~Dd~d~lRkvp~~~p~~~~~~~~~G~pl~~~p 99 (510)
T PRK00750 22 KPPVVVETG-IGPSGL-PHIGNFREVARTDMVRRALRDLGIKTRLIFFSDDMDGLRKVPDNVPNQEMLEEYLGKPLTEIP 99 (510)
T ss_pred CCcEEEEeC-CCCCCC-cccccccchhhHHHHHHHHHHcCCcEEEEEEEecCCcccccCCCCCchHHHHHhcCcccccCC
Confidence 344666655 479998 999999999999999999999999999999999997 565 2344445544
Q ss_pred -----chHHHHHHHHHHHHHHHHcCCccccCCcccCCChhHHHHHHHHHHHHHHCCcee
Q 002217 159 -----PKITTLRNINRFRTQLKSLGFSYDWNREISTIEPAYYKWTQWIFLQLLKRGLAY 212 (952)
Q Consensus 159 -----~~~~~~~~~~~~~~~l~~lgi~~Dw~~~~~T~~~~~~~~v~~~f~~L~~kGliy 212 (952)
+..+++++.+.+++.|+++||.+| ....|.....-...+.+...|.+++.|.
T Consensus 100 ~p~G~~~~~~~~~~~~~~~~~~~~gi~~d--~~~~t~~y~~g~~~~~i~~~l~~~~~i~ 156 (510)
T PRK00750 100 DPFGCHESYAEHFNAPLREFLDRFGIEYE--FISATECYKSGRYDEAILTALENRDEIM 156 (510)
T ss_pred CCCCCchHHHHHHHHHHHHHHHHcCCceE--EEehhhhhccCchHHHHHHHHHhHHHHH
Confidence 789999999999999999999888 2333322222244555555566655543
No 63
>TIGR00467 lysS_arch lysyl-tRNA synthetase, archaeal and spirochete. This model represents the lysyl-tRNA synthetases that are class I amino-acyl tRNA synthetases. It includes archaeal and spirochete examples of the enzyme. All other known examples are class IIc amino-acyl tRNA synthetases and seem to form a separate orthologous set.
Probab=99.73 E-value=1.6e-17 Score=193.79 Aligned_cols=86 Identities=22% Similarity=0.281 Sum_probs=77.8
Q ss_pred CcEEEEcCCCCCCCCCCCCchhHHHHHHHHHHHHHHHcCCccccccccccc------------------ChHHHHHHHHh
Q 002217 94 PKFYVLDMFPYPSGAGLHVGHPLGYTATDILARLKRMQGYNVLHPMGWDAF------------------GLPAEQYAIET 155 (952)
Q Consensus 94 ~kf~i~~~~Pypng~~lHiGH~~~~~~~Di~~Ry~r~~G~~V~~~~G~D~~------------------Glpie~~a~~~ 155 (952)
.+++|.+|.+ |||. +||||++..+.+|+++|++|++|++|.+++|+|+| |.|+...+...
T Consensus 18 ~~~~~~tg~~-psG~-~HiG~~~e~~~~d~v~r~~r~~g~~~~~i~~~Dd~D~lRKvp~~~p~~~~~ylG~Pl~~vpdp~ 95 (515)
T TIGR00467 18 NLYTVASGIT-PSGH-IHIGNFREVITADAIARALRDSGSEARFIYIADNYDPLRKVYPFLPEELETYLGMPLTRIPDPE 95 (515)
T ss_pred CeEEEecCCC-CCCC-ccccchhhhhHHHHHHHHHHHcCCCEEEEEEEcCCcccccccccccHHHHHhCCCcceecCCCC
Confidence 3688888877 9998 99999999999999999999999999999999999 77777666667
Q ss_pred CCCchHHHHHHHHHHHHHHHHcCCccc
Q 002217 156 GTHPKITTLRNINRFRTQLKSLGFSYD 182 (952)
Q Consensus 156 g~~~~~~~~~~~~~~~~~l~~lgi~~D 182 (952)
|.+ ..+++++...+.+.|..+|+.++
T Consensus 96 g~~-~s~~~h~~~~~~~~l~~~gi~~e 121 (515)
T TIGR00467 96 GCK-TSYAEHFLIPFLESLPVLGINPE 121 (515)
T ss_pred CCc-HHHHHHHHHHHHHHHHHcCCeEE
Confidence 774 88999999999999999999876
No 64
>TIGR00456 argS arginyl-tRNA synthetase. This model recognizes arginyl-tRNA synthetase in every completed genome to date. An interesting feature of the alignment of all arginyl-tRNA synthetases is a fairly deep split between two families. One family includes archaeal, eukaryotic and organellar, spirochete, E. coli, and Synechocystis sp. The second, sharing a deletion of about 25 residues in the central region relative to the first, includes Bacillus subtilis, Aquifex aeolicus, the Mycoplasmas and Mycobacteria, and the Gram-negative bacterium Helicobacter pylori.
Probab=99.66 E-value=1.3e-14 Score=174.09 Aligned_cols=121 Identities=16% Similarity=0.138 Sum_probs=83.7
Q ss_pred ccccccCCCCCCChh-----------------------hHHhhhCchhhhhhhhhcCCCCCCCCCChhhHHHH----HHH
Q 002217 707 AHKMSKSRGNVVNPD-----------------------DVVTEYGADSLRLYEMFMGPFRDSKTWNTSGIEGV----HRF 759 (952)
Q Consensus 707 g~KMSKSkGNvV~P~-----------------------eii~~YGaDalRl~ll~~~~~~~~~~~s~~~i~~~----~r~ 759 (952)
+.|||||+||+|+|+ ++++.+|.|++||++++.. ...+.+|+.+.+... ..+
T Consensus 370 ~~kmSkr~Gn~V~~~dll~~~~~ra~~~i~~~~~~~~~~~~~~vg~dAvRy~~L~~~-~~~d~~Fd~d~~~~~~~n~~~y 448 (566)
T TIGR00456 370 LGSMKTRRGNVISLDNLLDEASKRAGNVITIKNDLEEEDVADAVGIGAVRYFDLSQN-RETHYVFDWDAMLSFEGNTAPY 448 (566)
T ss_pred CCCCCccCCceeeHHHHHHHHHHHHHHHHHhcCCccHHHHHHHhcccceeeHHhhcC-CCCCceecHHHHhccCCCCchh
Confidence 689999999999998 7888899999999999766 678888987764321 112
Q ss_pred HHHHH----HHHhccCCCCCCCCCCc--cCCCCCChHHHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHhccc
Q 002217 760 LGRMW----RLIVGSSLPDGTFKGGT--VVNDEEPTLEQLCTLHKCIAKVTEEIEGTRFNTGISAMMEFINAAYKWE 830 (952)
Q Consensus 760 l~~l~----~~~~~~~~~~~~~~~~~--~~~~~~~d~~~l~~l~~~i~~v~~~~e~~~f~~ai~~l~~f~~~~~~~~ 830 (952)
+..+. ..+..... ....... .....+.+..++..+..+...+.+++++++++.++..+++++...|+++
T Consensus 449 iqYa~aR~~SIlrK~~~--~~~~~~~~~~~~~~~~e~~Ll~~l~~~~~~v~~a~~~~~p~~~~~~l~~La~~~N~yy 523 (566)
T TIGR00456 449 IQYAHARICSILRKADI--DGEKLIADDFSLLEEKEKELLKLLLQFPDVLEEAAEELEPHVLTNYLYELASLFSSFY 523 (566)
T ss_pred HHHHHHHHHHHHHhccc--ccccccccccCCCCHHHHHHHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHH
Confidence 33222 22211100 0000000 0011222445677888999999999999999999999999999988875
No 65
>cd00671 ArgRS_core catalytic core domain of arginyl-tRNA synthetases. Arginyl tRNA synthetase (ArgRS) catalytic core domain. This class I enzyme is a monomer which aminoacylates the 2'-OH of the nucleotide at the 3' of the appropriate tRNA. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. There are at least three subgroups of ArgRS. One type contains both characteristic class I HIGH and KMSKS motifs, which are involved in ATP binding. The second subtype lacks the KMSKS motif; however, it has a lysine N-terminal to the HIGH motif, which serves as the functional counterpart to the second lysine of the KMSKS motif. A third group, which is found primarily in archaea and a few bacteria, lacks both the KMSKS motif and the HIGH loop lysine.
Probab=99.66 E-value=3.6e-16 Score=164.63 Aligned_cols=119 Identities=18% Similarity=0.154 Sum_probs=107.3
Q ss_pred CCCCCCCCCCCCchhHHHHHHHHHHHHHHHcCCcccccccccccChHHHHHHHHhCCCchHHHHHHHHHHHHHHHHcCCc
Q 002217 101 MFPYPSGAGLHVGHPLGYTATDILARLKRMQGYNVLHPMGWDAFGLPAEQYAIETGTHPKITTLRNINRFRTQLKSLGFS 180 (952)
Q Consensus 101 ~~Pypng~~lHiGH~~~~~~~Di~~Ry~r~~G~~V~~~~G~D~~Glpie~~a~~~g~~~~~~~~~~~~~~~~~l~~lgi~ 180 (952)
..|.|||+ |||||+|++++.|+++|++|+.|++|.+..|+|++|.+|+..|.+.+ .++++++.+++.|.+.+++|||+
T Consensus 7 ~spN~~~~-~HiGH~R~~vigD~l~R~l~~~G~~V~~~~~~~D~G~qi~~~a~~~~-~~~~~~~~~~~~~~~~~~~L~i~ 84 (212)
T cd00671 7 VSANPTGP-LHVGHLRNAIIGDSLARILEFLGYDVTREYYINDWGRQIGLLILSLE-KWRKLVEESIKADLETYGRLDVR 84 (212)
T ss_pred cCCCCCCC-ccccccHHHHHHHHHHHHHHHCCCcEEEEeccCCcHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHhCCc
Confidence 47999998 99999999999999999999999999999999999999999997664 48899999999999999999999
Q ss_pred cccCCcccCCChhHHHHHHHHHHHHHHCCceeeeccccccCCCCC
Q 002217 181 YDWNREISTIEPAYYKWTQWIFLQLLKRGLAYQAEVPVNWCPALG 225 (952)
Q Consensus 181 ~Dw~~~~~T~~~~~~~~v~~~f~~L~~kGliy~~~~~v~wc~~~~ 225 (952)
+| .+..|++. ...++.++.+|.++|++|+....+++|+.+.
T Consensus 85 ~d--~~~~es~~--~~~~~~~i~~L~~~g~~~~~~g~~~~~~~~~ 125 (212)
T cd00671 85 FD--VWFGESSY--LGLMGKVVELLEELGLLYEEDGALWLDLTEF 125 (212)
T ss_pred Cc--eecchhhh--hhHHHHHHHHHHHCCCEEEeCCcEEEechhh
Confidence 88 56666654 8889999999999999999988887776543
No 66
>cd07961 Anticodon_Ia_Ile_ABEc Anticodon-binding domain of archaeal, bacterial, and eukaryotic cytoplasmic isoleucyl tRNA synthetases. This domain is found in isoleucyl tRNA synthetases (IleRS), which belong to the class Ia aminoacyl tRNA synthetases. It lies C-terminal to the catalytic core domain, and recognizes and specifically binds to the tRNA anticodon. This family includes bacterial, archaeal, and eukaryotic cytoplasmic members. IleRS catalyzes the transfer of isoleucine to the 3'-end of its tRNA.
Probab=99.59 E-value=4.1e-15 Score=153.24 Aligned_cols=130 Identities=24% Similarity=0.389 Sum_probs=99.8
Q ss_pred CChhhHHHHHH-HHHHHHHH---Hhcc-CCCCCCCCCC--ccCCCCCChHHHHHHHHHHHHHHHHHHhcCChHHHHHHHH
Q 002217 748 WNTSGIEGVHR-FLGRMWRL---IVGS-SLPDGTFKGG--TVVNDEEPTLEQLCTLHKCIAKVTEEIEGTRFNTGISAMM 820 (952)
Q Consensus 748 ~s~~~i~~~~r-~l~~l~~~---~~~~-~~~~~~~~~~--~~~~~~~~d~~~l~~l~~~i~~v~~~~e~~~f~~ai~~l~ 820 (952)
|++++++++.| |++++||. +++. ...+...... ........|+|+++++++++++++++|++|+|++|++.+|
T Consensus 1 ~s~~~v~~~~~~f~~KlwN~~rf~l~~~~~~~~~~~~~~~~~~~~~~~D~wil~~l~~~i~~~~~~~e~~~f~~a~~~l~ 80 (183)
T cd07961 1 FSEKGVREVVRKVLLPLWNAYRFFVTYANLDGFDPGKDDDAVASLNVLDRWILSRLNSLIKEVTEEMEAYDLYTAVRALL 80 (183)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCccccccccCchhHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHH
Confidence 57789999998 99999984 4431 1111110100 0011345689999999999999999999999999999999
Q ss_pred HHHHHHhcccc---------------------hhHHHHHHHHHHhCCcchhHHHHHHHHcCC-----CCCccccCCCCCC
Q 002217 821 EFINAAYKWEK---------------------HPRKIIEPFILLLAPYAPHMSEELWFRLGH-----SNSLAYESFPKAN 874 (952)
Q Consensus 821 ~f~~~~~~~~~---------------------~~~~vL~~l~~LLaPf~P~iaEElw~~L~~-----~~sV~~~~WP~~~ 874 (952)
.|++.+++||. .+.++++.+++||+|||||+|||||+.++. .++|+.++||.++
T Consensus 81 ~f~~~~~~~Y~e~~K~~~~~~~~~~~~~~~~~~l~~~l~~ll~ll~P~~P~~aEElw~~l~~~~~~~~~si~~~~wP~~~ 160 (183)
T cd07961 81 EFIDELTNWYIRRNRKRFWGEEGDDDKLAAYATLYEVLLTLSRLMAPFTPFITEEIYQNLRRELGDAPESVHLLDWPEVD 160 (183)
T ss_pred HHHHHhhhhHhhhchHHhcCCCCchhHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHhhhhcCCCCCceeeecCCCCc
Confidence 99998766541 234789999999999999999999999975 3689999999976
Q ss_pred ccc
Q 002217 875 PDY 877 (952)
Q Consensus 875 ~~~ 877 (952)
+.+
T Consensus 161 ~~~ 163 (183)
T cd07961 161 ESL 163 (183)
T ss_pred ccc
Confidence 544
No 67
>cd07960 Anticodon_Ia_Ile_BEm Anticodon-binding domain of bacterial and eukaryotic mitochondrial isoleucyl tRNA synthetases. This domain is found in isoleucyl tRNA synthetases (IleRS), which belong to the class Ia aminoacyl tRNA synthetases. It lies C-terminal to the catalytic core domain, and recognizes and specifically binds to the tRNA anticodon. This family includes bacterial and eukaryotic mitochondrial members. IleRS catalyzes the transfer of isoleucine to the 3'-end of its tRNA.
Probab=99.45 E-value=5.2e-13 Score=137.25 Aligned_cols=128 Identities=20% Similarity=0.300 Sum_probs=94.3
Q ss_pred ChhhHHHHHHHHHHHHH---HHhccCCCCCCCCCCc----cCCCCCChHHHHHHHHHHHHHHHHHHhcCChHHHHHHHHH
Q 002217 749 NTSGIEGVHRFLGRMWR---LIVGSSLPDGTFKGGT----VVNDEEPTLEQLCTLHKCIAKVTEEIEGTRFNTGISAMME 821 (952)
Q Consensus 749 s~~~i~~~~r~l~~l~~---~~~~~~~~~~~~~~~~----~~~~~~~d~~~l~~l~~~i~~v~~~~e~~~f~~ai~~l~~ 821 (952)
+.+.++++.++++++|| |+.+.. . ++.+.. .......|+|+++++++++++++++|++|+|++|++.+|+
T Consensus 2 ~~~~~~~~~~~~~Kl~N~~rf~~~~~-~--~~~~~~~~~~~~~~~~~D~~il~~l~~~i~~~~~~~e~~~f~~a~~~i~~ 78 (180)
T cd07960 2 SDEILKQVAEAYRKIRNTFRFLLGNL-N--DFDPAKDAVPYEELLELDRYALHRLNELIKEVREAYENYEFHKVYQALNN 78 (180)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHcc-c--CCCcccccCChhhccHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHH
Confidence 34566666666666665 554432 1 121111 0122346889999999999999999999999999999999
Q ss_pred HHH-HHhccc--------------c--------hhHHHHHHHHHHhCCcchhHHHHHHHHcCC---CCCccccCCCCCCc
Q 002217 822 FIN-AAYKWE--------------K--------HPRKIIEPFILLLAPYAPHMSEELWFRLGH---SNSLAYESFPKANP 875 (952)
Q Consensus 822 f~~-~~~~~~--------------~--------~~~~vL~~l~~LLaPf~P~iaEElw~~L~~---~~sV~~~~WP~~~~ 875 (952)
|++ .+.+|| . .+..+++.+++||+|||||+|||||+.|+. .++|+.++||++++
T Consensus 79 f~~~~l~n~Yi~~~k~~~~~~~~~~~~~~~~~~~l~~~l~~l~~lL~P~~P~~aeel~~~l~~~~~~~~v~~~~wP~~~~ 158 (180)
T cd07960 79 FCTVDLSAFYLDIIKDRLYCDAKDSLERRSAQTVLYHILDALLKLLAPILPFTAEEVWEHLPGEKKEESVFLEDWPELPE 158 (180)
T ss_pred HHHHHHHHHHHHhcccceecCCCCCHHHHHHHHHHHHHHHHHHHHHcchhhhhHHHHHHhccccCCCCCeeccCCCCCcc
Confidence 996 353431 0 234789999999999999999999999986 37899999999876
Q ss_pred cccC
Q 002217 876 DYLK 879 (952)
Q Consensus 876 ~~l~ 879 (952)
.+.+
T Consensus 159 ~~~~ 162 (180)
T cd07960 159 EWKD 162 (180)
T ss_pred cccC
Confidence 5443
No 68
>COG0018 ArgS Arginyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=99.42 E-value=6.7e-11 Score=139.99 Aligned_cols=140 Identities=22% Similarity=0.287 Sum_probs=98.1
Q ss_pred hhhHHHHHHHHHcC-CCCCCCCCCCCCC-cEEEEcCCCCCCCCCCCCchhHHHHHHHHHHHHHHHcCCcccccccccccC
Q 002217 68 EIEPKWQSYWENNR-TFRTPDEIDTSKP-KFYVLDMFPYPSGAGLHVGHPLGYTATDILARLKRMQGYNVLHPMGWDAFG 145 (952)
Q Consensus 68 ~iE~k~~~~W~~~~-~f~~~~~~~~~k~-kf~i~~~~Pypng~~lHiGH~~~~~~~Di~~Ry~r~~G~~V~~~~G~D~~G 145 (952)
.+.+..++...+.+ .|... +.+++ +..|=-.=|.|+|+ |||||+||.+++|+++|-++..||+|....-.++.|
T Consensus 92 ~~~~~~~~~l~~~~~~~G~~---~~~~~~kV~iE~sSaNptkp-lHiGHlR~aiiGDsLaril~~~Gy~V~r~~yvnD~G 167 (577)
T COG0018 92 FLAELLLEILEKGDDRYGRS---KLGKGKKVVIEYSSANPTGP-LHIGHLRNAIIGDSLARILEFLGYDVTRENYVNDWG 167 (577)
T ss_pred HHHHHHHHHHHhcccccCcc---ccCCCCEEEEEEeCCCCCCC-cccchhhhhHHHHHHHHHHHHcCCCeeEEeeECcHH
Confidence 45666667777633 34222 23344 44443347999999 999999999999999999999999999999999999
Q ss_pred hHHHHHHH---HhC-------C-------------------Cch------------------H------HHHHHHHHHHH
Q 002217 146 LPAEQYAI---ETG-------T-------------------HPK------------------I------TTLRNINRFRT 172 (952)
Q Consensus 146 lpie~~a~---~~g-------~-------------------~~~------------------~------~~~~~~~~~~~ 172 (952)
..+-..+. +.+ . ++. + .++...+.+++
T Consensus 168 ~Q~~~l~~~~~~~~~e~~~~~~~~~~~lg~~y~~i~~~~~~~~~~~~~~~~~~~~k~e~~d~~~~lw~~~v~~~l~~~k~ 247 (577)
T COG0018 168 TQIGMLALSYEKRGREALGLTPEPDGYLGEYYVKIAKDLEEDPGNDEEEAREEVEKLESGDEEAELWRKFVDLSLEGIKE 247 (577)
T ss_pred HHHHHHHHHHHHhccccccCCCCcchHHHHHHHHHHHHHHhCcccchHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHH
Confidence 87743321 000 0 010 0 23334566788
Q ss_pred HHHHcCCccccCCcccCCChhHHHHHHHHHHHHHHCCceee
Q 002217 173 QLKSLGFSYDWNREISTIEPAYYKWTQWIFLQLLKRGLAYQ 213 (952)
Q Consensus 173 ~l~~lgi~~Dw~~~~~T~~~~~~~~v~~~f~~L~~kGliy~ 213 (952)
.+.+||+.+| .++...+--|...+..+...|.++|++|+
T Consensus 248 ~l~~l~V~fD--~~~~E~e~~~~~~~~~vv~~L~~~~~~~e 286 (577)
T COG0018 248 TLDRLGVKFD--VYDSEGESFYNGKVEKVVEDLEEKGLLYE 286 (577)
T ss_pred HHHHhCcccc--eeeccchhhhcccHHHHHHHHHhcCCEee
Confidence 8999999888 55555555555578889999999999888
No 69
>cd07959 Anticodon_Ia_Leu_AEc Anticodon-binding domain of archaeal and eukaryotic cytoplasmic leucyl tRNA synthetases. This domain is found in leucyl tRNA synthetases (LeuRS), which belong to the class Ia aminoacyl tRNA synthetases. It lies C-terminal to the catalytic core domain. In contrast to other class Ia enzymes, the anticodon is not used as an identity element in LeuRS (with exceptions such as Saccharomyces cerevisiae and some other eukaryotes). No anticodon-binding site can be defined for this family, which includes archaeal and eukaryotic cytoplasmic members. LeuRS catalyzes the transfer of leucine to the 3'-end of its tRNA.
Probab=99.40 E-value=9.9e-13 Score=124.98 Aligned_cols=107 Identities=24% Similarity=0.307 Sum_probs=85.2
Q ss_pred CChhhHHHHHHHHHHHHHHHhccCCCCCCCCCCccCCCCCChHHHHHHHHHHHHHHHHHHhcCChHHHHHHH-HHHHHHH
Q 002217 748 WNTSGIEGVHRFLGRMWRLIVGSSLPDGTFKGGTVVNDEEPTLEQLCTLHKCIAKVTEEIEGTRFNTGISAM-MEFINAA 826 (952)
Q Consensus 748 ~s~~~i~~~~r~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~d~~~l~~l~~~i~~v~~~~e~~~f~~ai~~l-~~f~~~~ 826 (952)
|+.+.++++.|+|+|+|+++.... +... +. ......|+++++++++++++++++|++|+|++|++.+ |.|.+.+
T Consensus 1 w~~~~~~~~~~~l~R~~~~~~~~~--~~~~-~~--~~~~~~d~~~~~~~~~~i~~v~~~~~~~~f~~a~~~~~~~~~~~~ 75 (117)
T cd07959 1 FREEEANSAILRLERFYELAEELI--ETEG-EL--EELTFIDRWLLSRLNRLIKETTEAYENMQFREALKEGLYELQNDL 75 (117)
T ss_pred CcHHHHHHHHHHHHHHHHHHHHHH--hccC-Cc--cccchhHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHH
Confidence 788899999999999999985321 0100 10 1123467899999999999999999999999999996 9998876
Q ss_pred hcccc---------hhHHHHHHHHHHhCCcchhHHHHHHHHc
Q 002217 827 YKWEK---------HPRKIIEPFILLLAPYAPHMSEELWFRL 859 (952)
Q Consensus 827 ~~~~~---------~~~~vL~~l~~LLaPf~P~iaEElw~~L 859 (952)
+.+.. ...++++.+++||+||+||+|||+|+.|
T Consensus 76 ~~Y~~~~~~~~~~~~~~~~l~~~~~lL~P~~P~~aeeiw~~~ 117 (117)
T cd07959 76 DWYRERGGAGMNKDLLRRFIEVWTRLLAPFAPHLAEEIWHEL 117 (117)
T ss_pred HHHHHHhCccchHHHHHHHHHHHHHHHcCcchHhHHHHHhhC
Confidence 64321 3568999999999999999999999875
No 70
>PRK12451 arginyl-tRNA synthetase; Reviewed
Probab=99.39 E-value=6.3e-11 Score=141.88 Aligned_cols=118 Identities=14% Similarity=0.138 Sum_probs=82.3
Q ss_pred ccccccCCCCCCChhhHHhh-------------------------hCchhhhhhhhhcCCCCCCCCCChhhHH-------
Q 002217 707 AHKMSKSRGNVVNPDDVVTE-------------------------YGADSLRLYEMFMGPFRDSKTWNTSGIE------- 754 (952)
Q Consensus 707 g~KMSKSkGNvV~P~eii~~-------------------------YGaDalRl~ll~~~~~~~~~~~s~~~i~------- 754 (952)
|+||||.+||+|+.+|++++ -|.|++||++++ .....+..|+.+.+-
T Consensus 369 g~kmStR~G~~v~l~dLldea~~~a~~~~~~~~~~l~~~~~~a~~vg~~Airy~~l~-~~~~~~~~Fd~d~~l~~~g~t~ 447 (562)
T PRK12451 369 GKKMSTRKGRVVLLEEVLEEAIELAKQNIEEKNPNLKQKEEVAKQVGVGAVIFHDLK-NERMHNIEFSLENMLKFEGETG 447 (562)
T ss_pred CCCCcCCCCCeeEHHHHHHHHHHHHHHHHHhhccccccHHHHHHHhccceeeeHHhh-cCCCCCceECHHHHhCcCCCcc
Confidence 67999999999999999996 679999999995 455666678766532
Q ss_pred ----HHHHHHHHHHHHHhccCCCCCCCCCCccCCCCCChHHHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHhccc
Q 002217 755 ----GVHRFLGRMWRLIVGSSLPDGTFKGGTVVNDEEPTLEQLCTLHKCIAKVTEEIEGTRFNTGISAMMEFINAAYKWE 830 (952)
Q Consensus 755 ----~~~r~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~d~~~l~~l~~~i~~v~~~~e~~~f~~ai~~l~~f~~~~~~~~ 830 (952)
-++-.+..+.+-.- . .+.........+....++..+..+...+.+++++++++.++..+++++...|+++
T Consensus 448 pYiQYa~AR~~SIlrka~---~---~~~~~~~~l~~~~E~~Ll~~L~~~~~~v~~a~e~~ep~~~~~yl~~LA~~fN~fy 521 (562)
T PRK12451 448 PYVQYTHARACSILRKES---V---EFETCTFALKDDYSWSVVKLLNKFPQVIEAAFNKNEPSVISKYVLDVAQSFNKYY 521 (562)
T ss_pred HHHHHHHHHHHHHHHhcC---C---CccccccCCCCHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHH
Confidence 12333333333220 0 0100000011223345677889999999999999999999999999999998875
Q ss_pred c
Q 002217 831 K 831 (952)
Q Consensus 831 ~ 831 (952)
.
T Consensus 522 ~ 522 (562)
T PRK12451 522 G 522 (562)
T ss_pred H
Confidence 3
No 71
>cd07958 Anticodon_Ia_Leu_BEm Anticodon-binding domain of bacterial and eukaryotic mitochondrial leucyl tRNA synthetases. This domain is found in leucyl tRNA synthetases (LeuRS), which belong to the class Ia aminoacyl tRNA synthetases. It lies C-terminal to the catalytic core domain. In contrast to other class Ia enzymes, the anticodon is not used as an identity element in LeuRS (with exceptions such as Saccharomyces cerevisiae and some other eukaryotes). No anticodon-binding site can be defined for this family, which includes bacterial and eukaryotic mitochondrial members, as well as LeuRS from the archaeal Halobacteria. LeuRS catalyzes the transfer of leucine to the 3'-end of its tRNA.
Probab=99.38 E-value=1.9e-12 Score=122.80 Aligned_cols=110 Identities=47% Similarity=0.802 Sum_probs=87.5
Q ss_pred CChhhHHHHHHHHHHHHHHHhccCCCCCCCCCCccCCCCCChHHHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHh
Q 002217 748 WNTSGIEGVHRFLGRMWRLIVGSSLPDGTFKGGTVVNDEEPTLEQLCTLHKCIAKVTEEIEGTRFNTGISAMMEFINAAY 827 (952)
Q Consensus 748 ~s~~~i~~~~r~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~d~~~l~~l~~~i~~v~~~~e~~~f~~ai~~l~~f~~~~~ 827 (952)
|+++++++++||++|+|+++.... ++.............|.++++++++++++++++|++|+|++|++.+++|++.++
T Consensus 1 w~~~~~~~~~n~l~R~~~~~~~~~--~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~a~~~i~~~~~~~n 78 (117)
T cd07958 1 WSDSGVEGAYRFLNRVWRLVTELA--EALAAPAAAAELSEEDKELRRKLHKTIKKVTEDIERLRFNTAIAALMELVNALY 78 (117)
T ss_pred CCcchhHHHHHHHHHHHHHHHHHH--hhccccccccccchhhHHHHHHHHHHHHHHHHHHhCCcchHHHHHHHHHHHHHH
Confidence 788999999999999999874311 010000000012335788999999999999999999999999999999999998
Q ss_pred cccc-------hhHHHHHHHHHHhCCcchhHHHHHHHHc
Q 002217 828 KWEK-------HPRKIIEPFILLLAPYAPHMSEELWFRL 859 (952)
Q Consensus 828 ~~~~-------~~~~vL~~l~~LLaPf~P~iaEElw~~L 859 (952)
++.. ...++++.+++||+||+||+|||+|+.|
T Consensus 79 ~~~~~~~p~~~~~~~~l~~~~~lL~P~~P~~aeei~~~l 117 (117)
T cd07958 79 KYKKKDAQHAAVLREALETLVLLLAPFAPHIAEELWEEL 117 (117)
T ss_pred HhhccccchHHHHHHHHHHHHHHHcccchHHHHHHHhhC
Confidence 8753 3458899999999999999999999865
No 72
>PF08264 Anticodon_1: Anticodon-binding domain of tRNA; InterPro: IPR013155 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. This domain is found valyl, leucyl and isoleucyl tRNA synthetases. It binds to the anticodon of the tRNA.; GO: 0000166 nucleotide binding, 0004812 aminoacyl-tRNA ligase activity, 0005524 ATP binding, 0006418 tRNA aminoacylation for protein translation, 0005737 cytoplasm; PDB: 4DLP_A 1RQG_A 4ARI_A 4AQ7_D 4ARC_A 4AS1_A 1IVS_B 1GAX_B 2CT8_B 2CSX_A ....
Probab=99.33 E-value=3.4e-13 Score=134.59 Aligned_cols=89 Identities=33% Similarity=0.674 Sum_probs=69.9
Q ss_pred hHHHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHH-HHHhccc--------------------chhHHHHHHHHHHhCCc
Q 002217 789 TLEQLCTLHKCIAKVTEEIEGTRFNTGISAMMEFI-NAAYKWE--------------------KHPRKIIEPFILLLAPY 847 (952)
Q Consensus 789 d~~~l~~l~~~i~~v~~~~e~~~f~~ai~~l~~f~-~~~~~~~--------------------~~~~~vL~~l~~LLaPf 847 (952)
|+|+++++++++++++++|++|+|++|+..++.|+ +.+++|| ..+.++++.+++||+||
T Consensus 1 D~~il~~~~~~~~~~~~~~e~~~f~~a~~~i~~f~~~~~~n~Yl~~~k~~~~~~~~~~~~~~~~~l~~~l~~~~~ll~P~ 80 (153)
T PF08264_consen 1 DRWILSKLNELIKKVTEAYENYEFNKALKEIMNFIWNDLSNWYLELIKPWLYCKDDDESREAQYTLYEILKILLILLSPF 80 (153)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHCHHHHHHHHHHHCTTTTCHHHHHHHHHHHHHHHHHHHHTTT
T ss_pred CHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHhcccchhcccchhHHHHHHHHHHHHHHHhhccCCC
Confidence 68999999999999999999999999999999984 6665543 12357899999999999
Q ss_pred chhHHHHHHH-----HcCCCCCccccCCCCCCcccc
Q 002217 848 APHMSEELWF-----RLGHSNSLAYESFPKANPDYL 878 (952)
Q Consensus 848 ~P~iaEElw~-----~L~~~~sV~~~~WP~~~~~~l 878 (952)
|||+|||+|+ .++..++|+.+.||. +....
T Consensus 81 ~P~~aEeiw~~l~~~~~~~~~si~~~~~p~-~~~~~ 115 (153)
T PF08264_consen 81 MPFIAEEIWQRLKSEKLGEKSSIFLEKWPE-DPEFI 115 (153)
T ss_dssp SHHHHHHHHHHCTTHHTTSSSSGGGS------GGGG
T ss_pred CcHHHHHHHHHhhhccCCCCCeeeeCCCCC-Chhhh
Confidence 9999999995 456678999999998 55433
No 73
>cd00802 class_I_aaRS_core catalytic core domain of class I amino acyl-tRNA synthetase. Class I amino acyl-tRNA synthetase (aaRS) catalytic core domain. These enzymes are mostly monomers which aminoacylate the 2'-OH of the nucleotide at the 3' of the appropriate tRNA. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. It contains the characteristic class I HIGH and KMSKS motifs, which are involved in ATP binding.
Probab=99.29 E-value=5.2e-12 Score=124.78 Aligned_cols=75 Identities=28% Similarity=0.248 Sum_probs=72.5
Q ss_pred cCCCCCCCCCCCCchhHHHHHHHHHHHHHHHcCCcccccccccccChHHHHHHHHhCCCchHHHHHHHHHHHHHHH
Q 002217 100 DMFPYPSGAGLHVGHPLGYTATDILARLKRMQGYNVLHPMGWDAFGLPAEQYAIETGTHPKITTLRNINRFRTQLK 175 (952)
Q Consensus 100 ~~~Pypng~~lHiGH~~~~~~~Di~~Ry~r~~G~~V~~~~G~D~~Glpie~~a~~~g~~~~~~~~~~~~~~~~~l~ 175 (952)
...|||||. +||||++++++.|+++||+|++|++|.++.|+|++|.++...|.+.+..++++++.+++.|+++++
T Consensus 3 ~~~p~~~~~-~HlGh~~~~~~~d~~~r~lr~~G~~v~~~~~~dd~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~ 77 (143)
T cd00802 3 FSGITPNGY-LHIGHLRTIVTFDFLAQAYRKLGYKVRCIALIDDAGGLIGDPANKKGENAKAFVERWIERIKEDVE 77 (143)
T ss_pred ecCCCCCCC-ccHhHHHHHHHHHHHHHHHHHcCCCeEEEeeeCCCchHHHHHHHhcCCCHHHHHHHHHHHHHHHHH
Confidence 457999998 999999999999999999999999999999999999999999999999999999999999999998
No 74
>PLN02286 arginine-tRNA ligase
Probab=99.11 E-value=2.1e-08 Score=120.54 Aligned_cols=120 Identities=15% Similarity=0.104 Sum_probs=81.3
Q ss_pred ccccccCCCCCCChhhHHhh-----------------------------hCchhhhhhhhhcCCCCCCCCCChhhHH---
Q 002217 707 AHKMSKSRGNVVNPDDVVTE-----------------------------YGADSLRLYEMFMGPFRDSKTWNTSGIE--- 754 (952)
Q Consensus 707 g~KMSKSkGNvV~P~eii~~-----------------------------YGaDalRl~ll~~~~~~~~~~~s~~~i~--- 754 (952)
|+||||.+||+|+.+|++++ .|.|++||++++ .....+.+|+.+.+-
T Consensus 376 g~kmStR~G~~v~L~dlldea~~~a~~~~~~~~~~~~~~~~~~~~~a~~vg~~Airy~~L~-~~~~~~~~Fd~d~~l~~~ 454 (576)
T PLN02286 376 GKRFRTRSGEVVRLVDLLDEAKSRSKAALIERGKDSEWTPEELEQAAEAVGYGAVKYADLK-NNRLTNYTFSFDQMLDLK 454 (576)
T ss_pred CCcccCCCCCeeEHHHHHHHHHHHHHHHHHhccCccccchhhHHHHHHHhhhhhhhhhhhh-cCCCCCCccCHHHHHhhc
Confidence 67999999999999999993 578999999985 455666778876632
Q ss_pred --------HHHHHHHHHHHHHhccCCCCCCCCC-CccCCCCCChHHHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHH
Q 002217 755 --------GVHRFLGRMWRLIVGSSLPDGTFKG-GTVVNDEEPTLEQLCTLHKCIAKVTEEIEGTRFNTGISAMMEFINA 825 (952)
Q Consensus 755 --------~~~r~l~~l~~~~~~~~~~~~~~~~-~~~~~~~~~d~~~l~~l~~~i~~v~~~~e~~~f~~ai~~l~~f~~~ 825 (952)
-++..+..+++-.-.. . ..+.. .......+....++..|.++-..+.++.++++.+..+.-++++...
T Consensus 455 g~t~pYlQYahAR~~SIlrKa~~~-~--~~~~~~~~~~l~~~~E~~L~~~l~~fp~vv~~a~~~~~P~~l~~Yl~~LA~~ 531 (576)
T PLN02286 455 GNTAVYLLYAHARICSIIRKSGKD-I--DELKKTGKIVLDHPDERALGLHLLQFPEVVEEACTDLLPNRLCEYLYNLSEK 531 (576)
T ss_pred CCChHHHHHHHHHHHHHHHhccCc-c--ccccccccccCCCHHHHHHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHH
Confidence 2333344443322100 0 00000 0001112234556778888888899999999999999999999998
Q ss_pred Hhccc
Q 002217 826 AYKWE 830 (952)
Q Consensus 826 ~~~~~ 830 (952)
.++||
T Consensus 532 F~~fY 536 (576)
T PLN02286 532 FTKFY 536 (576)
T ss_pred HHHHH
Confidence 88876
No 75
>cd07962 Anticodon_Ia_Val Anticodon-binding domain of valyl tRNA synthetases. This domain is found in valyl tRNA synthetases (ValRS), which belong to the class Ia aminoacyl tRNA synthetases. It lies C-terminal to the catalytic core domain, and recognizes and specifically binds to the tRNA anticodon. ValRS catalyzes the transfer of valine to the 3'-end of its tRNA.
Probab=99.08 E-value=6.5e-10 Score=108.69 Aligned_cols=112 Identities=26% Similarity=0.391 Sum_probs=81.4
Q ss_pred CChhhHHHHHHHHHHHHHHHhcc--CCCCCCCCCCccCCCCCChHHHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHH
Q 002217 748 WNTSGIEGVHRFLGRMWRLIVGS--SLPDGTFKGGTVVNDEEPTLEQLCTLHKCIAKVTEEIEGTRFNTGISAMMEFINA 825 (952)
Q Consensus 748 ~s~~~i~~~~r~l~~l~~~~~~~--~~~~~~~~~~~~~~~~~~d~~~l~~l~~~i~~v~~~~e~~~f~~ai~~l~~f~~~ 825 (952)
|+++++.++++||.++|+++... .....+............+.+++++++++++++.++|++|+|++|++.+|++++.
T Consensus 1 ~~~~~~~~~~~~l~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~l~~~~~~~~~~~~~~~e~~~~~~al~~i~~~~~~ 80 (135)
T cd07962 1 FDEKRVEGGRNFCNKLWNAARFVLMNLEDDDEPEEDPESLSLADRWILSRLNKTVEEVTEALENYRFSEAATALYEFFWN 80 (135)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHcccccCccccccccCCHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHH
Confidence 57889999999999999876311 0011111000001112346778899999999999999999999999999999973
Q ss_pred --Hhc-------cc---c---------hhHHHHHHHHHHhCCcchhHHHHHHHHc
Q 002217 826 --AYK-------WE---K---------HPRKIIEPFILLLAPYAPHMSEELWFRL 859 (952)
Q Consensus 826 --~~~-------~~---~---------~~~~vL~~l~~LLaPf~P~iaEElw~~L 859 (952)
.|. |. . ...++++.++++|+||+||+||++|+.|
T Consensus 81 ~~~N~Yi~~~~pW~~~~~~~~~~~~~~~~~~~l~~l~~lL~P~~P~~ae~l~~~L 135 (135)
T cd07962 81 DFCDWYLELVKPRLYGEDEEEKKAARATLYYVLETILRLLHPFMPFITEELWQRL 135 (135)
T ss_pred HHhHHHHHHhhHHHcCCChHHHHHHHHHHHHHHHHHHHHHCccccHHHHHHHhcC
Confidence 332 31 1 1236799999999999999999999865
No 76
>cd07957 Anticodon_Ia_Met Anticodon-binding domain of methionyl tRNA synthetases. This domain is found in methionyl tRNA synthetases (MetRS), which belong to the class Ia aminoacyl tRNA synthetases. It lies C-terminal to the catalytic core domain, and recognizes and specifically binds to the tRNA anticodon (CAU). MetRS catalyzes the transfer of methionine to the 3'-end of its tRNA.
Probab=99.06 E-value=1.4e-09 Score=105.06 Aligned_cols=105 Identities=19% Similarity=0.263 Sum_probs=78.0
Q ss_pred hhHHHHHHHHHHHHHHHhccCCCCCCCCCCccCCCCCChHHHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHhccc
Q 002217 751 SGIEGVHRFLGRMWRLIVGSSLPDGTFKGGTVVNDEEPTLEQLCTLHKCIAKVTEEIEGTRFNTGISAMMEFINAAYKWE 830 (952)
Q Consensus 751 ~~i~~~~r~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~d~~~l~~l~~~i~~v~~~~e~~~f~~ai~~l~~f~~~~~~~~ 830 (952)
+.+....+++.|+++++.... ++..... ......|.++++++++++++++++|++|+|++|++.+++|++.++++.
T Consensus 4 ~l~~~~gnll~r~~~~~~~~~--~~~~~~~--~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~n~y~ 79 (129)
T cd07957 4 ELANNLGNLVNRTLNMASKYF--GGVVPEF--GGLTEEDEELLEEAEELLEEVAEAMEELEFRKALEEIMELARAANKYI 79 (129)
T ss_pred HHHhhHhhHHHHHHHHHHHHc--CCcCCCC--CCCCcccHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHhhh
Confidence 345566788899888874321 1111100 012345789999999999999999999999999999999998776531
Q ss_pred ------------c---------hhHHHHHHHHHHhCCcchhHHHHHHHHc
Q 002217 831 ------------K---------HPRKIIEPFILLLAPYAPHMSEELWFRL 859 (952)
Q Consensus 831 ------------~---------~~~~vL~~l~~LLaPf~P~iaEElw~~L 859 (952)
. ...++++.+++||+|||||+|||+|+.|
T Consensus 80 ~~~kpw~~~~~~~~~~~~~~l~~~~~~l~~~~~lL~P~~P~~aeei~~~l 129 (129)
T cd07957 80 DETAPWKLAKEEDPERLATVLYVLLELLRILAILLSPFMPETAEKILDQL 129 (129)
T ss_pred ccCCCHHHHccCCHHHHHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHhC
Confidence 1 1125678999999999999999999875
No 77
>PF01921 tRNA-synt_1f: tRNA synthetases class I (K); InterPro: IPR002904 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. Lysyl-tRNA synthetase (6.1.1.6 from EC) is an alpha 2 homodimer that belong to both class I and class II. In eubacteria and eukaryota lysyl-tRNA synthetases belong to class II in the same family as aspartyl tRNA synthetase. The class Ic lysyl-tRNA synthetase family is present in archaea and in a number of bacterial groups that include the alphaproteobacteria and spirochaetes[]. A refined crystal structures shows that the active site of LysU is shaped to position the substrates for the nucleophilic attack of the lysine carboxylate on the ATP alpha-phosphate. No residues are directly involved in catalysis, but a number of highly conserved amino acids and three metal ions coordinate the substrates and stabilise the pentavalent transition state. A loop close to the catalytic pocket, disordered in the lysine-bound structure, becomes ordered upon adenine binding [].; GO: 0000166 nucleotide binding, 0004824 lysine-tRNA ligase activity, 0005524 ATP binding, 0006430 lysyl-tRNA aminoacylation, 0005737 cytoplasm; PDB: 1IRX_A.
Probab=98.76 E-value=8.9e-09 Score=114.11 Aligned_cols=89 Identities=21% Similarity=0.226 Sum_probs=57.4
Q ss_pred CCCcEEEEcCCCCCCCCCCCCchhHHHHHHHHHHHHHHHcCCcccccccccccC--------hHHHHHHHHhCCC-----
Q 002217 92 SKPKFYVLDMFPYPSGAGLHVGHPLGYTATDILARLKRMQGYNVLHPMGWDAFG--------LPAEQYAIETGTH----- 158 (952)
Q Consensus 92 ~k~kf~i~~~~Pypng~~lHiGH~~~~~~~Di~~Ry~r~~G~~V~~~~G~D~~G--------lpie~~a~~~g~~----- 158 (952)
++.++++ .+-=.|+|. +|||+++..+.+|+++|-+|.+|.+|.+++.||+.. +|-+..+.-.|.+
T Consensus 21 ~~~~~v~-~sG~sPSG~-~HIGn~rEv~~~~~V~~al~~~g~~~r~i~~~DD~D~lRKvP~~~p~~~~~~ylg~Plt~VP 98 (360)
T PF01921_consen 21 GKEPYVF-ASGISPSGL-PHIGNFREVLRADMVARALRDRGKDVRLIYFSDDMDPLRKVPPNVPNPELEKYLGKPLTRVP 98 (360)
T ss_dssp --SEEEE-EEEE--SS----HHHHHHHHHHHHHHHHHHTTT-EEEEEEEE-TTSB-----TTS-CC-CCCCTTSBTTTSB
T ss_pred CCccEEE-ecCCCCCCC-cccccccchhhHHHHHHHHHHcCCCEEEEEEeecCCcccCCCCCCChHHHHHhcCCccccCC
Confidence 3455555 455689998 999999999999999999999999999999999985 2222000011211
Q ss_pred -----chHHHHHHHHHHHHHHHHcCCccc
Q 002217 159 -----PKITTLRNINRFRTQLKSLGFSYD 182 (952)
Q Consensus 159 -----~~~~~~~~~~~~~~~l~~lgi~~D 182 (952)
...+++.+.+.+.+.|..+|+.+.
T Consensus 99 dP~G~~~SyaeH~~~~~~~~L~~~gie~e 127 (360)
T PF01921_consen 99 DPFGCHESYAEHFNAPFEEFLDEFGIEYE 127 (360)
T ss_dssp -TTSSSSCHHHHHHHHHHHHHHTTT---E
T ss_pred CCCCCCccHHHHHHHHHHHHHHHcCCceE
Confidence 246788999999999999999664
No 78
>COG1384 LysS Lysyl-tRNA synthetase (class I) [Translation, ribosomal structure and biogenesis]
Probab=98.49 E-value=3.6e-06 Score=96.13 Aligned_cols=86 Identities=22% Similarity=0.239 Sum_probs=68.7
Q ss_pred EEEEcCCCCCCCCCCCCchhHHHHHHHHHHHHHHHcCCcccccccccccC--------hHHHHHHHH-hCCC--------
Q 002217 96 FYVLDMFPYPSGAGLHVGHPLGYTATDILARLKRMQGYNVLHPMGWDAFG--------LPAEQYAIE-TGTH-------- 158 (952)
Q Consensus 96 f~i~~~~Pypng~~lHiGH~~~~~~~Di~~Ry~r~~G~~V~~~~G~D~~G--------lpie~~a~~-~g~~-------- 158 (952)
.+++.+-=.|+|. +|||+++-.+.+|+++|-+|-+|+.|.+++=||+.. +|-....++ .|.+
T Consensus 20 ~~~v~tGisPSG~-~HIGn~rEv~t~d~V~ralr~~g~~~r~I~~~DD~D~lRkvp~~lp~~~~~e~Ylg~Plt~IPdP~ 98 (521)
T COG1384 20 EYVVATGISPSGL-IHIGNFREVLTADAVRRALRDRGDEVRLIYISDDYDPLRKVPRNLPDPEELEQYLGMPLTEIPDPF 98 (521)
T ss_pred cEEEecCcCCCCC-cccccHHHHHHHHHHHHHHHHcCCceEEEEEccCCcccccCCCCCCChHHHHHHcCCccccCCCCc
Confidence 3455666789998 999999999999999999999999999999999996 332122222 3432
Q ss_pred --chHHHHHHHHHHHHHHHHcCCccc
Q 002217 159 --PKITTLRNINRFRTQLKSLGFSYD 182 (952)
Q Consensus 159 --~~~~~~~~~~~~~~~l~~lgi~~D 182 (952)
+..+++.+...|.+.|..+|+.+.
T Consensus 99 G~~~Sya~hf~~~f~~~l~~~Gi~~E 124 (521)
T COG1384 99 GCCDSYAEHFLRPFEEFLDEFGIEVE 124 (521)
T ss_pred cccchHHHHHHHHHHHHHHhcCCceE
Confidence 456888899999999999999765
No 79
>PF00750 tRNA-synt_1d: tRNA synthetases class I (R); InterPro: IPR015945 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. This entry represents the core region of arginyl-tRNA synthetase (6.1.1.19 from EC), which has been crystallized and preliminary X-ray crystallographic analysis of yeast arginyl-tRNA synthetase-yeast tRNAArg complexes is available []. ; GO: 0000166 nucleotide binding, 0004814 arginine-tRNA ligase activity, 0005524 ATP binding, 0006420 arginyl-tRNA aminoacylation, 0005737 cytoplasm; PDB: 2ZUE_A 2ZUF_A 3FNR_A 1IQ0_A 1F7V_A 1F7U_A 1BS2_A 3GDZ_B.
Probab=98.24 E-value=3e-06 Score=96.39 Aligned_cols=121 Identities=23% Similarity=0.264 Sum_probs=84.3
Q ss_pred CCCcEEEEcCCCCCCCCCCCCchhHHHHHHHHHHHHHHHcCCcccccccccccChHHHHHHHH--------hC-CCc---
Q 002217 92 SKPKFYVLDMFPYPSGAGLHVGHPLGYTATDILARLKRMQGYNVLHPMGWDAFGLPAEQYAIE--------TG-THP--- 159 (952)
Q Consensus 92 ~k~kf~i~~~~Pypng~~lHiGH~~~~~~~Di~~Ry~r~~G~~V~~~~G~D~~Glpie~~a~~--------~g-~~~--- 159 (952)
..++.+|=-.=|.|+|+ |||||+|+.+++|.++|-++..||+|.-..-..+.|..+...+.. .. ..+
T Consensus 18 ~~~kv~VE~sSpNp~kp-lHvGHlR~~iiGd~laril~~~G~~V~r~nyigD~G~Q~~~l~~~~~~~~~~~~~~~~~~~~ 96 (354)
T PF00750_consen 18 KGKKVVVEFSSPNPTKP-LHVGHLRNTIIGDSLARILEAAGYDVTRENYIGDWGTQIGLLAASYKKFGDEELLEEDPIKH 96 (354)
T ss_dssp TSEEEEEEE---BTTSS--BHHHHHHHHHHHHHHHHHHHTTEEEEEEEEEBTTSHHHHHHHHHHHHHHHHHTSHSSCHHH
T ss_pred CCCEEEEEecCCCCCCC-CcCCcchhhhhhHHHHHHHHHcCCeeeeEEEECCCCHHHHHHHHHHHhhhhhhhcccccccc
Confidence 34555555557889998 999999999999999999999999999999999999887443210 00 000
Q ss_pred -------------------------------------------hHHHHH-HHHHHHHHHHHcCCccccCCcccCCChhHH
Q 002217 160 -------------------------------------------KITTLR-NINRFRTQLKSLGFSYDWNREISTIEPAYY 195 (952)
Q Consensus 160 -------------------------------------------~~~~~~-~~~~~~~~l~~lgi~~Dw~~~~~T~~~~~~ 195 (952)
.++..+ ..+.++++++++|+.+| ..+.-.+-.|.
T Consensus 97 l~~~Y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~le~gd~~~~~~~~~~~~~~~k~~l~~l~i~fD--v~~~E~Es~~~ 174 (354)
T PF00750_consen 97 LEDLYVGANKRDEADEIAEKEPEELEEEAREYLKKLEQGDEEFRELWQKYILEWSKETLQRLYIRFD--VWFDESESFYS 174 (354)
T ss_dssp HHHHHHHHHHHHHHTTCSSGCCCCHHHHHHHHHHHHHHCCTTHHHHHHHHHHHHHHHHHHHTT---S--EEEEHCHHHHT
T ss_pred hhhhhhhhhhhhhhhhhccccccccccccceeeeecccccHHHHHHHHHHHHHHHHHHHHHHHHHhC--cCcccchhhhh
Confidence 001122 44567788999999998 55555555566
Q ss_pred HHHHHHHHHHHHCCceeeec
Q 002217 196 KWTQWIFLQLLKRGLAYQAE 215 (952)
Q Consensus 196 ~~v~~~f~~L~~kGliy~~~ 215 (952)
..+..++.+|.++|++|+..
T Consensus 175 ~~v~~vl~~L~e~g~~~~~d 194 (354)
T PF00750_consen 175 GKVDEVLERLKEKGLLYESD 194 (354)
T ss_dssp THHHHHHHHHHCTTTEEEET
T ss_pred hHHHHHHHHHHhCCcEEecC
Confidence 77899999999999999753
No 80
>cd07375 Anticodon_Ia_like Anticodon-binding domain of class Ia aminoacyl tRNA synthetases and similar domains. This domain is found in a variety of class Ia aminoacyl tRNA synthetases, C-terminal to the catalytic core domain. It recognizes and specifically binds to the anticodon of the tRNA. Aminoacyl tRNA synthetases catalyze the transfer of cognate amino acids to the 3'-end of their tRNAs by specifically recognizing cognate from non-cognate amino acids. Members include valyl-, leucyl-, isoleucyl-, cysteinyl-, arginyl-, and methionyl-tRNA synthethases. This superfamily also includes a domain from MshC, an enzyme in the mycothiol biosynthetic pathway.
Probab=98.22 E-value=5e-06 Score=78.28 Aligned_cols=98 Identities=22% Similarity=0.262 Sum_probs=69.2
Q ss_pred hhHHHHHHHHHHHHHHHhccCCCCCCCCCCcc-CCCCCChHHHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHhcc
Q 002217 751 SGIEGVHRFLGRMWRLIVGSSLPDGTFKGGTV-VNDEEPTLEQLCTLHKCIAKVTEEIEGTRFNTGISAMMEFINAAYKW 829 (952)
Q Consensus 751 ~~i~~~~r~l~~l~~~~~~~~~~~~~~~~~~~-~~~~~~d~~~l~~l~~~i~~v~~~~e~~~f~~ai~~l~~f~~~~~~~ 829 (952)
+.+.++.++++++||.+...........+... ......|.|+++++++++++++++|++|+|++|++.+|+|++.++.+
T Consensus 2 ~~v~~~~~~~n~~~r~~~~~~~~~~~~~~~~~~~~~~~~d~~l~~~~~~~~~~~~~~~e~~~~~~a~~~i~~~~~~~n~y 81 (117)
T cd07375 2 ERLKQARAFLNRLYRLLSFFRKALGGTQPKWDNELLEEADRELLARLQEFIKRTTNALEALDPTTAVQELFKFTNELNWY 81 (117)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHhcCCCCCCcChhhcCHhhHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhccHH
Confidence 56788889999888866211000000111000 01123478899999999999999999999999999999999887653
Q ss_pred cc-----------------hhHHHHHHHHHHhCCcc
Q 002217 830 EK-----------------HPRKIIEPFILLLAPYA 848 (952)
Q Consensus 830 ~~-----------------~~~~vL~~l~~LLaPf~ 848 (952)
.. ...++++.++++|+|||
T Consensus 82 ~~~~~pw~~~~~~~~~~~~~~~~~l~~l~~lL~P~~ 117 (117)
T cd07375 82 LDELKPALQTEELREAVLAVLRAALVVLTKLLAPFT 117 (117)
T ss_pred HHHhhHHHcCchhHHHHHHHHHHHHHHHHHHHcCCC
Confidence 21 23467899999999996
No 81
>cd09287 GluRS_non_core catalytic core domain of non-discriminating glutamyl-tRNA synthetase. Non-discriminating Glutamyl-tRNA synthetase (GluRS) cataytic core domain. These enzymes attach Glu to the appropriate tRNA. Like other class I tRNA synthetases, they aminoacylate the 2'-OH of the nucleotide at the 3' end of the tRNA. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. It contains the characteristic class I HIGH and KMSKS motifs, which are involved in ATP binding. These enzymes function as monomers. Archaea and most bacteria lack GlnRS. In these organisms, the "non-discriminating" form of GluRS aminoacylates both tRNA(Glu) and tRNA(Gln) with Glu, which is converted to Gln when appropriate by a transamidation enzyme.
Probab=98.17 E-value=2.8e-06 Score=90.06 Aligned_cols=92 Identities=20% Similarity=0.284 Sum_probs=72.3
Q ss_pred CCCCCCCCCCCCchhHHHHHHHHHHHHHHHcCCcccccccccccChHHHHHHHHhCCCchHHHHHHHHHHHHHHHHcCCc
Q 002217 101 MFPYPSGAGLHVGHPLGYTATDILARLKRMQGYNVLHPMGWDAFGLPAEQYAIETGTHPKITTLRNINRFRTQLKSLGFS 180 (952)
Q Consensus 101 ~~Pypng~~lHiGH~~~~~~~Di~~Ry~r~~G~~V~~~~G~D~~Glpie~~a~~~g~~~~~~~~~~~~~~~~~l~~lgi~ 180 (952)
-+|.|+|. ||+||+++.++.++++| ++++.++.-+|+...+.. + ......+.|.++|+.||+
T Consensus 6 faPsPtG~-lHiG~~rtal~~~l~Ar-----~~~G~~ilRieDtD~~r~--------~---~~~~~~~~i~~dL~wLGl- 67 (240)
T cd09287 6 FAPNPNGP-LHLGHARAAILNGEYAK-----MYGGKFILRFDDTDPRTK--------R---PDPEAYDMIPEDLEWLGV- 67 (240)
T ss_pred CCCCCCCC-ccHHHHHHHHHHHHHHH-----HcCCEEEEeeCcCCCCcc--------c---chHHHHHHHHHHHHHcCC-
Confidence 37999998 99999999999999999 788888888888866542 1 223344558999999999
Q ss_pred cccCCcccCCChhHHHHHHHHHHHHHHCCceee
Q 002217 181 YDWNREISTIEPAYYKWTQWIFLQLLKRGLAYQ 213 (952)
Q Consensus 181 ~Dw~~~~~T~~~~~~~~v~~~f~~L~~kGliy~ 213 (952)
+|+..+. ..++.+..+.+..+|.++|++|.
T Consensus 68 -~~d~~~~--qS~r~~~y~~~~~~Li~~G~aY~ 97 (240)
T cd09287 68 -KWDEVVI--ASDRIELYYEYARKLIEMGGAYV 97 (240)
T ss_pred -CCCCccc--hhccHHHHHHHHHHHHHcCCccc
Confidence 6665433 33666667778899999999997
No 82
>PRK04156 gltX glutamyl-tRNA synthetase; Provisional
Probab=97.95 E-value=2.7e-05 Score=92.16 Aligned_cols=146 Identities=18% Similarity=0.192 Sum_probs=94.8
Q ss_pred cchhhHHHHHhhcccccCCChhhhhHHHHHHHHHcCCC--CC------CCC-CCCCCCcEEEEcCCCCCCCCCCCCchhH
Q 002217 46 SVNEIEEQKQKQQVVKRAYPFHEIEPKWQSYWENNRTF--RT------PDE-IDTSKPKFYVLDMFPYPSGAGLHVGHPL 116 (952)
Q Consensus 46 ~~~~~~~~~~~~~~~~~~y~~~~iE~k~~~~W~~~~~f--~~------~~~-~~~~k~kf~i~~~~Pypng~~lHiGH~~ 116 (952)
-+++.-.-.++...--..+++.+++++..+.|-+.--. ++ ..+ .+..+.+ +++=-+|.|||. |||||++
T Consensus 43 ~~~ei~~~v~~~v~~vn~ms~ee~~~~l~~~~pe~~~~~~~~~~~~~~lp~L~~ae~g~-V~tRFaPsPtG~-LHIGhar 120 (567)
T PRK04156 43 KAKEIIPIVKEVVEEVNSLSLEEQRERLEELAPELLEEEEEKKEEKKGLPPLPNAEKGK-VVMRFAPNPSGP-LHLGHAR 120 (567)
T ss_pred hhhhHHHHHHHHHHHHhcCCHHHHHHHHHHhChhhhhhhhhhcccccCCCCCCCCCCCe-EEEEeCCCCCCC-ccHHHHH
Confidence 34444444444333335567777777777776643000 00 000 1111222 444458999998 9999999
Q ss_pred HHHHHHHHHHHHHHcCCcccccccccccChHHHHHHHHhCCCchHHHHHHHHHHHHHHHHcCCccccCCcccCCChhHHH
Q 002217 117 GYTATDILARLKRMQGYNVLHPMGWDAFGLPAEQYAIETGTHPKITTLRNINRFRTQLKSLGFSYDWNREISTIEPAYYK 196 (952)
Q Consensus 117 ~~~~~Di~~Ry~r~~G~~V~~~~G~D~~Glpie~~a~~~g~~~~~~~~~~~~~~~~~l~~lgi~~Dw~~~~~T~~~~~~~ 196 (952)
+.++.+.+|| +|...++.-+|+..-.++. ....+.+.|.++|+.||+ +|+..+.+ .+|..
T Consensus 121 aalln~~~Ar-----~~~G~~iLRidDTDpk~~R-----------~~~e~~~~I~edL~wLGl--~wD~~~~q--Sdr~~ 180 (567)
T PRK04156 121 AAILNDEYAK-----MYGGKFILRFEDTDPRTKR-----------PDPEAYDMILEDLKWLGV--KWDEVVIQ--SDRLE 180 (567)
T ss_pred HHHHHHHHHH-----HcCCEEEEeEccCCCCccc-----------chHHHHHHHHHHHHHcCC--CCCCccCc--ccCHH
Confidence 9999999999 5666777778877553311 233455889999999999 66655433 46667
Q ss_pred HHHHHHHHHHHCCceee
Q 002217 197 WTQWIFLQLLKRGLAYQ 213 (952)
Q Consensus 197 ~v~~~f~~L~~kGliy~ 213 (952)
.......+|.++|++|.
T Consensus 181 ~y~~~a~~Li~~G~AY~ 197 (567)
T PRK04156 181 IYYEYARKLIEMGGAYV 197 (567)
T ss_pred HHHHHHHHHHHcCCCcc
Confidence 77888899999999984
No 83
>TIGR00463 gltX_arch glutamyl-tRNA synthetase, archaeal and eukaryotic family. The glutamyl-tRNA synthetases of the eukaryotic cytosol and of the Archaea are more similar to glutaminyl-tRNA synthetases than to bacterial glutamyl-tRNA synthetases. This alignment models just the eukaryotic cytosolic and archaeal forms of the enzyme. In some eukaryotes, the glutamyl-tRNA synthetase is part of a longer, multifunctional aminoacyl-tRNA ligase. In many species, the charging of tRNA(gln) proceeds first through misacylation with Glu and then transamidation. For this reason, glutamyl-tRNA synthetases may act on both tRNA(gln) and tRNA(glu).
Probab=97.65 E-value=0.00026 Score=83.95 Aligned_cols=95 Identities=20% Similarity=0.230 Sum_probs=73.4
Q ss_pred EEEcCCCCCCCCCCCCchhHHHHHHHHHHHHHHHcCCcccccccccccChHHHHHHHHhCCCchHHHHHHHHHHHHHHHH
Q 002217 97 YVLDMFPYPSGAGLHVGHPLGYTATDILARLKRMQGYNVLHPMGWDAFGLPAEQYAIETGTHPKITTLRNINRFRTQLKS 176 (952)
Q Consensus 97 ~i~~~~Pypng~~lHiGH~~~~~~~Di~~Ry~r~~G~~V~~~~G~D~~Glpie~~a~~~g~~~~~~~~~~~~~~~~~l~~ 176 (952)
+++==+|.|||. ||||||++.++.+.+|| .|+..++.=+|+..-+ .....+.+.|.++|+.
T Consensus 94 vvtRFaPsPtG~-LHiGharaalln~~~Ar-----~~~G~~iLRidDTDp~-------------R~~~e~~~~I~edL~w 154 (560)
T TIGR00463 94 VVMRFAPNPSGP-LHIGHARAAILNQYFAK-----KYKGKLIIRFDDTDPR-------------RVKPEAYDMILEDLDW 154 (560)
T ss_pred eEEEeCCCCCCC-ccHHHHHHHHHHHHHHH-----hcCCEEEEEeCcCCcc-------------cccHHHHHHHHHHHHH
Confidence 566669999998 99999999999999996 3455666677776542 1123478889999999
Q ss_pred cCCccccCCcccCCChhHHHHHHHHHHHHHHCCceeee
Q 002217 177 LGFSYDWNREISTIEPAYYKWTQWIFLQLLKRGLAYQA 214 (952)
Q Consensus 177 lgi~~Dw~~~~~T~~~~~~~~v~~~f~~L~~kGliy~~ 214 (952)
||+. |+.. +...+|.........+|.++|++|.-
T Consensus 155 LGi~--~d~~--~~qSd~~~~y~~~a~~Li~~G~AY~C 188 (560)
T TIGR00463 155 LGVK--GDEV--VYQSDRIEEYYDYCRKLIEMGKAYVC 188 (560)
T ss_pred cCCC--CCcc--ccccccHHHHHHHHHHHHHcCCceee
Confidence 9996 5554 34457777888899999999999974
No 84
>cd00807 GlnRS_core catalytic core domain of glutaminyl-tRNA synthetase. Glutaminyl-tRNA synthetase (GlnRS) cataytic core domain. These enzymes attach Gln to the appropriate tRNA. Like other class I tRNA synthetases, they aminoacylate the 2'-OH of the nucleotide at the 3' end of the tRNA. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. GlnRS contains the characteristic class I HIGH and KMSKS motifs, which are involved in ATP binding. These enzymes function as monomers. Archaea and most bacteria lack GlnRS. In these organisms, the "non-discriminating" form of GluRS aminoacylates both tRNA(Glu) and tRNA(Gln) with Glu, which is converted to Gln when appropriate by a transamidation enzyme.
Probab=97.21 E-value=0.00086 Score=71.16 Aligned_cols=89 Identities=24% Similarity=0.307 Sum_probs=65.0
Q ss_pred CCCCCCCCCCCchhHHHHHHHHHHHHHHHcCCcccccccccccChHHHHHHHHhCCCchHHHHHHHHHHHHHHHHcCCcc
Q 002217 102 FPYPSGAGLHVGHPLGYTATDILARLKRMQGYNVLHPMGWDAFGLPAEQYAIETGTHPKITTLRNINRFRTQLKSLGFSY 181 (952)
Q Consensus 102 ~Pypng~~lHiGH~~~~~~~Di~~Ry~r~~G~~V~~~~G~D~~Glpie~~a~~~g~~~~~~~~~~~~~~~~~l~~lgi~~ 181 (952)
+|.|||. ||+||+++.++.-.+||- ..|.-+ .=+|+.. +......+.+.+.++|+-||+
T Consensus 7 APsPtG~-lHlG~~~~al~~~l~Ar~--~~G~~i---LRieDtD-------------~~R~~~~~~~~I~~dL~wlGl-- 65 (238)
T cd00807 7 PPEPNGY-LHIGHAKAILLNFGYAKK--YGGRCN---LRFDDTN-------------PEKEEEEYVDSIKEDVKWLGI-- 65 (238)
T ss_pred CCCCCCc-ccHHHHHHHHHHHHHHHH--hCCEEE---EEecCCC-------------CcccchHHHHHHHHHHHHcCC--
Confidence 7999998 999999999999888864 345333 3334433 223345677889999999999
Q ss_pred ccCCcccCCChhHHHHHHHHHHHHHHCCceee
Q 002217 182 DWNREISTIEPAYYKWTQWIFLQLLKRGLAYQ 213 (952)
Q Consensus 182 Dw~~~~~T~~~~~~~~v~~~f~~L~~kGliy~ 213 (952)
+|+..+. ..++.+.-+....+|.++|++|.
T Consensus 66 ~wD~~~~--QS~r~~~Y~~~~~~L~~~g~aY~ 95 (238)
T cd00807 66 KPYKVTY--ASDYFDQLYEYAEQLIKKGKAYV 95 (238)
T ss_pred CCCCcee--cccCHHHHHHHHHHHHHcCCeec
Confidence 5554433 33555666788899999999999
No 85
>PTZ00402 glutamyl-tRNA synthetase; Provisional
Probab=97.18 E-value=0.00077 Score=80.03 Aligned_cols=93 Identities=26% Similarity=0.357 Sum_probs=69.2
Q ss_pred EEEcCCCCCCCCCCCCchhHHHHHHHHHHHHHHHcCCcccccccccccChHHHHHHHHhCCCchHHHHHHHHHHHHHHHH
Q 002217 97 YVLDMFPYPSGAGLHVGHPLGYTATDILARLKRMQGYNVLHPMGWDAFGLPAEQYAIETGTHPKITTLRNINRFRTQLKS 176 (952)
Q Consensus 97 ~i~~~~Pypng~~lHiGH~~~~~~~Di~~Ry~r~~G~~V~~~~G~D~~Glpie~~a~~~g~~~~~~~~~~~~~~~~~l~~ 176 (952)
+++==+|-|||. ||||||++.++...+||-. .|.- +.=+|+.. |......+.+.+.++|+-
T Consensus 53 v~tRFAPsPtGy-LHIGharaAllN~l~Ar~~--gG~~---iLRiEDTD-------------p~R~~~e~~d~IleDL~W 113 (601)
T PTZ00402 53 VVTRFPPEASGF-LHIGHAKAALINSMLADKY--KGKL---VFRFDDTN-------------PSKEKEHFEQAILDDLAT 113 (601)
T ss_pred eEEeeCCCCCCc-ccHHHHHHHHHHHHHHHHh--CCEE---EEEEcCCC-------------CcccCHHHHHHHHHHHHH
Confidence 555569999998 9999999999999988843 4533 33344433 333445778999999999
Q ss_pred cCCccccCC-cccCCChhHHHHHHHHHHHHHHCCcee
Q 002217 177 LGFSYDWNR-EISTIEPAYYKWTQWIFLQLLKRGLAY 212 (952)
Q Consensus 177 lgi~~Dw~~-~~~T~~~~~~~~v~~~f~~L~~kGliy 212 (952)
||+ +|+. .+.+ .+|...-.....+|.++|++|
T Consensus 114 LGl--~wDe~~~~Q--Sdr~d~y~e~a~~Li~~G~AY 146 (601)
T PTZ00402 114 LGV--SWDVGPTYS--SDYMDLMYEKAEELIKKGLAY 146 (601)
T ss_pred CCC--CCCCceeec--cccHHHHHHHHHHHHHcCCEE
Confidence 999 6665 3333 356677788899999999999
No 86
>TIGR03838 queuosine_YadB glutamyl-queuosine tRNA(Asp) synthetase. This protein resembles a shortened glutamyl-tRNA ligase, but its purpose is to modify tRNA(Asp) at a queuosine position in the anticodon rather than to charge a tRNA with its cognate amino acid.
Probab=97.15 E-value=0.00095 Score=72.68 Aligned_cols=90 Identities=23% Similarity=0.327 Sum_probs=65.4
Q ss_pred CCCCCCCCCCCchhHHHHHHHHHHHHHHHcCCcccccccccccChHHHHHHHHhCCCchHHHHHHHHHHHHHHHHcCCcc
Q 002217 102 FPYPSGAGLHVGHPLGYTATDILARLKRMQGYNVLHPMGWDAFGLPAEQYAIETGTHPKITTLRNINRFRTQLKSLGFSY 181 (952)
Q Consensus 102 ~Pypng~~lHiGH~~~~~~~Di~~Ry~r~~G~~V~~~~G~D~~Glpie~~a~~~g~~~~~~~~~~~~~~~~~l~~lgi~~ 181 (952)
.|-|||. ||+||+++.++.-.+|| +..|.-++.+ |+..- ......+.+.+.++|+.||+
T Consensus 6 APSPtG~-lHiG~~rtAL~n~l~Ar--~~gG~~iLRi---EDtD~-------------~R~~~~~~~~I~~dL~wLGl-- 64 (272)
T TIGR03838 6 APSPSGP-LHFGSLVAALGSYLDAR--AHGGRWLVRI---EDLDP-------------PREVPGAADDILRTLEAYGL-- 64 (272)
T ss_pred CCCCCCc-ccHHHHHHHHHHHHHHH--HhCCEEEEEe---CcCCC-------------CCCChHHHHHHHHHHHHcCC--
Confidence 6999998 99999999999999998 4466555543 33322 11233567889999999999
Q ss_pred ccCCc-ccCCChhHHHHHHHHHHHHHHCCceeee
Q 002217 182 DWNRE-ISTIEPAYYKWTQWIFLQLLKRGLAYQA 214 (952)
Q Consensus 182 Dw~~~-~~T~~~~~~~~v~~~f~~L~~kGliy~~ 214 (952)
+|+.. +.. .++.+.-.....+|.++|++|.-
T Consensus 65 ~wDe~~~~Q--S~r~~~Y~~~~~~L~~~G~aY~C 96 (272)
T TIGR03838 65 HWDGEVVYQ--SQRHALYQAALDRLLAAGLAYPC 96 (272)
T ss_pred CCCCCeeee--eCCHHHHHHHHHHHHHcCCEEec
Confidence 56543 232 25556667788899999999863
No 87
>PF00749 tRNA-synt_1c: tRNA synthetases class I (E and Q), catalytic domain; InterPro: IPR020058 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. Glutamyl-tRNA synthetase (6.1.1.17 from EC) is a class Ic synthetase and shows several similarities with glutaminyl-tRNA synthetase concerning structure and catalytic properties. It is an alpha2 dimer. To date one crystal structure of a glutamyl-tRNA synthetase (Thermus thermophilus) has been solved. The molecule has the form of a bent cylinder and consists of four domains. The N-terminal half (domains 1 and 2) contains the 'Rossman fold' typical for class I synthetases and resembles the corresponding part of Escherichia coli GlnRS, whereas the C-terminal half exhibits a GluRS-specific structure []. ; GO: 0000166 nucleotide binding, 0005524 ATP binding, 0016876 ligase activity, forming aminoacyl-tRNA and related compounds, 0043039 tRNA aminoacylation, 0005737 cytoplasm; PDB: 2HZ7_A 2CFO_A 4A91_A 1NZJ_A 1N78_A 1G59_C 2CV2_A 2CV1_A 2CV0_B 1GLN_A ....
Probab=97.14 E-value=0.00078 Score=75.33 Aligned_cols=91 Identities=22% Similarity=0.306 Sum_probs=59.4
Q ss_pred CCCCCCCCCCCchhHHHHHHHHHHHHHHHcCCcccccccccccChHHHHHHHHhCCCchHHHHHHHHHHHHHHHHcCCcc
Q 002217 102 FPYPSGAGLHVGHPLGYTATDILARLKRMQGYNVLHPMGWDAFGLPAEQYAIETGTHPKITTLRNINRFRTQLKSLGFSY 181 (952)
Q Consensus 102 ~Pypng~~lHiGH~~~~~~~Di~~Ry~r~~G~~V~~~~G~D~~Glpie~~a~~~g~~~~~~~~~~~~~~~~~l~~lgi~~ 181 (952)
.|.|||. |||||+++.++.-.+|| +..|.-++ =+|+... ......+.+.+.+.|+.||+..
T Consensus 7 APsPtG~-lHiG~~r~al~n~~~Ar--~~~G~~iL---RieDtD~-------------~R~~~~~~~~i~~~L~wlGl~~ 67 (314)
T PF00749_consen 7 APSPTGY-LHIGHARTALLNYLFAR--KYGGKFIL---RIEDTDP-------------ERCRPEFYDAILEDLRWLGLEW 67 (314)
T ss_dssp ---SSSS--BHHHHHHHHHHHHHHH--HTTSEEEE---EEETSST-------------TTCHHHHHHHHHHHHHHHT---
T ss_pred CCCCCCC-cccchhHHHHHHHHHHh--ccCceEEE---ecccccc-------------ccchhhHHHHHHhheeEEEEec
Confidence 6999998 99999999999988887 44554443 3444433 2223466788999999999955
Q ss_pred ccCCcccCCChhHHHHHHHHHHHHHHCCceeee
Q 002217 182 DWNREISTIEPAYYKWTQWIFLQLLKRGLAYQA 214 (952)
Q Consensus 182 Dw~~~~~T~~~~~~~~v~~~f~~L~~kGliy~~ 214 (952)
|. .++.. .++.+.-+....+|.++|++|.-
T Consensus 68 D~-~~~~Q--S~r~~~Y~~~~~~L~~~g~aY~C 97 (314)
T PF00749_consen 68 DY-GPYYQ--SDRLEIYQEAAEKLIDKGKAYPC 97 (314)
T ss_dssp ST-CEEEG--GGGHHHHHHHHHHHHHTTSEEEE
T ss_pred CC-eEEeH--HHHHHHHHHHHHHHhhcCCCccc
Confidence 52 33332 35556667788899999999863
No 88
>PRK12558 glutamyl-tRNA synthetase; Provisional
Probab=97.13 E-value=0.00092 Score=77.54 Aligned_cols=90 Identities=22% Similarity=0.253 Sum_probs=65.3
Q ss_pred CCCCCCCCCCCchhHHHHHHHHHHHHHHHcCCcccccccccccChHHHHHHHHhCCCchHHHHHHHHHHHHHHHHcCCcc
Q 002217 102 FPYPSGAGLHVGHPLGYTATDILARLKRMQGYNVLHPMGWDAFGLPAEQYAIETGTHPKITTLRNINRFRTQLKSLGFSY 181 (952)
Q Consensus 102 ~Pypng~~lHiGH~~~~~~~Di~~Ry~r~~G~~V~~~~G~D~~Glpie~~a~~~g~~~~~~~~~~~~~~~~~l~~lgi~~ 181 (952)
.|-|+|. |||||+++.+..-++|| .+.-.|+.=+|+... ........+.|.++|+.||+.+
T Consensus 8 APSPTG~-lHiG~artAL~n~l~Ar-----~~gG~fiLRIEDTD~-------------~Rs~~~~~~~I~e~L~wLGI~~ 68 (445)
T PRK12558 8 APSPTGY-LHVGNARTALLNWLYAR-----KHGGKFILRIDDTDL-------------ERSKQEYADAIAEDLKWLGINW 68 (445)
T ss_pred CCCCCCc-ccHHHHHHHHHHHHHHH-----HhCCEEEEEeccCCc-------------ccchHHHHHHHHHHHHHcCCCC
Confidence 7999998 99999999887755554 344455555555542 2234577889999999999965
Q ss_pred ccCCcccCCChhHHHHHHHHHHHHHHCCceeee
Q 002217 182 DWNREISTIEPAYYKWTQWIFLQLLKRGLAYQA 214 (952)
Q Consensus 182 Dw~~~~~T~~~~~~~~v~~~f~~L~~kGliy~~ 214 (952)
| ..|. ..+.......+..+|.++|++|+-
T Consensus 69 D--e~y~--QSer~~~y~~~~e~L~e~G~AY~C 97 (445)
T PRK12558 69 D--RTFR--QSDRFDRYDEAAEKLKAAGRLYPC 97 (445)
T ss_pred C--cccc--HHHHHHHHHHHHHHHHHCCCEEEe
Confidence 5 5433 234446789999999999998864
No 89
>PLN03233 putative glutamate-tRNA ligase; Provisional
Probab=97.10 E-value=0.00097 Score=78.33 Aligned_cols=95 Identities=25% Similarity=0.337 Sum_probs=70.2
Q ss_pred EEEcCCCCCCCCCCCCchhHHHHHHHHHHHHHHHcCCcccccccccccChHHHHHHHHhCCCchHHHHHHHHHHHHHHHH
Q 002217 97 YVLDMFPYPSGAGLHVGHPLGYTATDILARLKRMQGYNVLHPMGWDAFGLPAEQYAIETGTHPKITTLRNINRFRTQLKS 176 (952)
Q Consensus 97 ~i~~~~Pypng~~lHiGH~~~~~~~Di~~Ry~r~~G~~V~~~~G~D~~Glpie~~a~~~g~~~~~~~~~~~~~~~~~l~~ 176 (952)
+++==+|-|||. ||||||++.++...+||- ..|.-++ =+|+.. |.....++.+.+.++|+-
T Consensus 12 v~tRFAPsPtG~-LHiGharaAlln~l~Ar~--~gG~~iL---RiEDTD-------------p~R~~~e~~~~I~~dL~W 72 (523)
T PLN03233 12 IVTRFPPEPSGY-LHIGHAKAALLNDYYARR--YKGRLIL---RFDDTN-------------PSKEKAEFEESIIEDLGK 72 (523)
T ss_pred EEEeeCCCCCCc-ccHHHHHHHHHHHHHHHH--hCCEEEE---EECCCC-------------CCccchHHHHHHHHHHHH
Confidence 455568999998 999999999999999874 3454333 344433 233345678999999999
Q ss_pred cCCccccCCcccCCChhHHHHHHHHHHHHHHCCceeee
Q 002217 177 LGFSYDWNREISTIEPAYYKWTQWIFLQLLKRGLAYQA 214 (952)
Q Consensus 177 lgi~~Dw~~~~~T~~~~~~~~v~~~f~~L~~kGliy~~ 214 (952)
||+. |+..+.+ .+|...-.....+|.++|++|.-
T Consensus 73 LGl~--wD~~~~q--Sdr~~~y~~~a~~Li~~G~AY~C 106 (523)
T PLN03233 73 IEIK--PDSVSFT--SDYFEPIRCYAIILIEEGLAYMD 106 (523)
T ss_pred hCCC--CCCCccc--cccHHHHHHHHHHHHHcCCeEec
Confidence 9995 5565444 45666778889999999999963
No 90
>PTZ00437 glutaminyl-tRNA synthetase; Provisional
Probab=97.10 E-value=0.0012 Score=77.90 Aligned_cols=94 Identities=23% Similarity=0.311 Sum_probs=67.8
Q ss_pred EEcCCCCCCCCCCCCchhHHHHHHHHHHHHHHHcCCcccccccccccChHHHHHHHHhCCCchHHHHHHHHHHHHHHHHc
Q 002217 98 VLDMFPYPSGAGLHVGHPLGYTATDILARLKRMQGYNVLHPMGWDAFGLPAEQYAIETGTHPKITTLRNINRFRTQLKSL 177 (952)
Q Consensus 98 i~~~~Pypng~~lHiGH~~~~~~~Di~~Ry~r~~G~~V~~~~G~D~~Glpie~~a~~~g~~~~~~~~~~~~~~~~~l~~l 177 (952)
++=-+|-|||. ||||||++.++...+||.. .|. ++.=+|+.. |......+.+.+.++|+-|
T Consensus 53 ~tRFaPsPtG~-LHiGharaalln~~~Ar~~--gG~---~iLRiEDTD-------------p~r~~~e~~~~I~~dL~wL 113 (574)
T PTZ00437 53 YFRFPPEPNGF-LHIGHAKSMNLNFGSARAH--GGK---CYLRYDDTN-------------PETEEQVYIDAIMEMVKWM 113 (574)
T ss_pred EEEeCCCCCCc-ccHHHHHHHHHHHHHHHHh--CCE---EEEEECCCC-------------ccccChHHHHHHHHHHHHc
Confidence 44448999998 9999999999999988753 443 333344443 2334456788999999999
Q ss_pred CCccccCCcccCCChhHHHHHHHHHHHHHHCCceeee
Q 002217 178 GFSYDWNREISTIEPAYYKWTQWIFLQLLKRGLAYQA 214 (952)
Q Consensus 178 gi~~Dw~~~~~T~~~~~~~~v~~~f~~L~~kGliy~~ 214 (952)
|+. |+..+. ..+|.........+|.++|++|.-
T Consensus 114 Gi~--~D~~~~--qS~y~~~~ye~A~~Li~~G~AY~C 146 (574)
T PTZ00437 114 GWK--PDWVTF--SSDYFDQLHEFAVQLIKDGKAYVD 146 (574)
T ss_pred CCC--CCCCCc--CchhHHHHHHHHHHHHHcCCEEEc
Confidence 994 555443 345656566777899999999973
No 91
>TIGR00440 glnS glutaminyl-tRNA synthetase. This protein is a relatively rare aminoacyl-tRNA synthetase, found in the cytosolic compartment of eukaryotes, in E. coli and a number of other Gram-negative Bacteria, and in Deinococcus radiodurans. In contrast, the pathway to Gln-tRNA in mitochondria, Archaea, Gram-positive Bacteria, and a number of other lineages is by misacylation with Glu followed by transamidation to correct the aminoacylation to Gln. This enzyme is a class I tRNA synthetase (hit by the pfam model tRNA-synt_1c) and is quite closely related to glutamyl-tRNA synthetases.
Probab=97.07 E-value=0.0012 Score=77.61 Aligned_cols=91 Identities=22% Similarity=0.352 Sum_probs=63.8
Q ss_pred CCCCCCCCCCCchhHHHHHHHHHHHHHHHcCCcccccccccccChHHHHHHHHhCCCchHHHHHHHHHHHHHHHHcCCcc
Q 002217 102 FPYPSGAGLHVGHPLGYTATDILARLKRMQGYNVLHPMGWDAFGLPAEQYAIETGTHPKITTLRNINRFRTQLKSLGFSY 181 (952)
Q Consensus 102 ~Pypng~~lHiGH~~~~~~~Di~~Ry~r~~G~~V~~~~G~D~~Glpie~~a~~~g~~~~~~~~~~~~~~~~~l~~lgi~~ 181 (952)
+|-|||. ||||||++.++...+||- ..|.- +.=+|+..- .....++.+.+.++|+-||+..
T Consensus 6 aPsPtG~-LHiG~ar~al~n~~~A~~--~~G~~---iLRieDTd~-------------~r~~~e~~~~I~~dL~wLG~~~ 66 (522)
T TIGR00440 6 PPEPNGY-LHIGHAKSICLNFGYAKY--YNGTC---NLRFDDTNP-------------VKEDPEYVESIKRDVEWLGFKW 66 (522)
T ss_pred CCCCCCc-ccHHHHHHHHHHHHHHHH--hCCEE---EEEEcCCCc-------------ccCChHHHHHHHHHHHHcCCCC
Confidence 8999998 999999999999998873 34543 333444432 2234467889999999999944
Q ss_pred ccCCcccCCChhHHHHHHHHHHHHHHCCceeee
Q 002217 182 DWNREISTIEPAYYKWTQWIFLQLLKRGLAYQA 214 (952)
Q Consensus 182 Dw~~~~~T~~~~~~~~v~~~f~~L~~kGliy~~ 214 (952)
| +..+.+ .+|.........+|.++|++|.-
T Consensus 67 d-~~~~~q--S~~~~~~~~~a~~Li~~G~AY~c 96 (522)
T TIGR00440 67 E-GKIRYS--SDYFDELYRYAEELIKKGLAYVD 96 (522)
T ss_pred C-CCceEc--cccHHHHHHHHHHHHHcCCEEee
Confidence 3 233333 24444445566899999999974
No 92
>PRK05347 glutaminyl-tRNA synthetase; Provisional
Probab=96.98 E-value=0.0016 Score=76.94 Aligned_cols=96 Identities=21% Similarity=0.302 Sum_probs=66.1
Q ss_pred EEEcCCCCCCCCCCCCchhHHHHHHHHHHHHHHHcCCcccccccccccChHHHHHHHHhCCCchHHHHHHHHHHHHHHHH
Q 002217 97 YVLDMFPYPSGAGLHVGHPLGYTATDILARLKRMQGYNVLHPMGWDAFGLPAEQYAIETGTHPKITTLRNINRFRTQLKS 176 (952)
Q Consensus 97 ~i~~~~Pypng~~lHiGH~~~~~~~Di~~Ry~r~~G~~V~~~~G~D~~Glpie~~a~~~g~~~~~~~~~~~~~~~~~l~~ 176 (952)
+++=-+|-|||. ||+|||++.++...+||- ..|. ++.=+|+... .....++.+.+.++|+-
T Consensus 30 v~tRFaPsPtG~-LHiG~ar~al~n~~~Ar~--~~G~---~iLRieDTd~-------------~r~~~e~~~~I~~dL~w 90 (554)
T PRK05347 30 VHTRFPPEPNGY-LHIGHAKSICLNFGLAQD--YGGK---CNLRFDDTNP-------------EKEDQEYVDSIKEDVRW 90 (554)
T ss_pred eEEEeCCCCCCc-ccHHHHHHHHHHHHHHHH--hCCE---EEEEECCCCC-------------CcCChHHHHHHHHHHHH
Confidence 455568999998 999999999999988874 3443 3333454432 22345678899999999
Q ss_pred cCCccccCCcccCCChhHHHHHHHHHHHHHHCCceeee
Q 002217 177 LGFSYDWNREISTIEPAYYKWTQWIFLQLLKRGLAYQA 214 (952)
Q Consensus 177 lgi~~Dw~~~~~T~~~~~~~~v~~~f~~L~~kGliy~~ 214 (952)
||+..| +..+.++ +|.........+|.++|++|.-
T Consensus 91 LGi~~d-~~~~~qS--~r~~~~y~~a~~Li~~G~AY~c 125 (554)
T PRK05347 91 LGFDWS-GELRYAS--DYFDQLYEYAVELIKKGKAYVD 125 (554)
T ss_pred cCCCCC-CCceeee--cCHHHHHHHHHHHHHcCCEeeC
Confidence 999554 2334433 3334344555699999999963
No 93
>PLN02907 glutamate-tRNA ligase
Probab=96.95 E-value=0.0022 Score=78.94 Aligned_cols=94 Identities=24% Similarity=0.400 Sum_probs=70.4
Q ss_pred EEEcCCCCCCCCCCCCchhHHHHHHHHHHHHHHHcCCcccccccccccChHHHHHHHHhCCCchHHHHHHHHHHHHHHHH
Q 002217 97 YVLDMFPYPSGAGLHVGHPLGYTATDILARLKRMQGYNVLHPMGWDAFGLPAEQYAIETGTHPKITTLRNINRFRTQLKS 176 (952)
Q Consensus 97 ~i~~~~Pypng~~lHiGH~~~~~~~Di~~Ry~r~~G~~V~~~~G~D~~Glpie~~a~~~g~~~~~~~~~~~~~~~~~l~~ 176 (952)
+++==+|-|||. ||||||++.++...+|| ...|.-+ .=+|+.. |.....++.+.+.++|+-
T Consensus 214 v~tRFaPsPtG~-LHiG~ar~al~n~~~Ar--~~~G~~i---LR~eDTd-------------p~r~~~e~~~~I~~dl~w 274 (722)
T PLN02907 214 VCTRFPPEPSGY-LHIGHAKAALLNQYFAR--RYKGKLI---VRFDDTN-------------PSKESDEFVENILKDIET 274 (722)
T ss_pred eEEeeCCCCCCc-ccHHHHHHHHHHHHHHH--HhCCEEE---EEecCCC-------------CCcCChHHHHHHHHHHHH
Confidence 566669999998 99999999999999998 3455433 3344433 223344778999999999
Q ss_pred cCCccccCCcccCCChhHHHHHHHHHHHHHHCCceee
Q 002217 177 LGFSYDWNREISTIEPAYYKWTQWIFLQLLKRGLAYQ 213 (952)
Q Consensus 177 lgi~~Dw~~~~~T~~~~~~~~v~~~f~~L~~kGliy~ 213 (952)
||+ +|+..+.+ .+|...-.....+|.++|++|.
T Consensus 275 LG~--~~d~~~~q--S~r~~~y~~~a~~Li~~G~aY~ 307 (722)
T PLN02907 275 LGI--KYDAVTYT--SDYFPQLMEMAEKLIKEGKAYV 307 (722)
T ss_pred cCC--CCCCcccc--cccHHHHHHHHHHHHHcCCeee
Confidence 999 55566544 4566667888899999999996
No 94
>COG0008 GlnS Glutamyl- and glutaminyl-tRNA synthetases [Translation, ribosomal structure and biogenesis]
Probab=96.85 E-value=0.0024 Score=74.57 Aligned_cols=95 Identities=23% Similarity=0.332 Sum_probs=68.3
Q ss_pred EEEcCCCCCCCCCCCCchhHHHHHHHHHHHHHHHcCCcccccccccccChHHHHHHHHhCCCchHHHHHHHHHHHHHHHH
Q 002217 97 YVLDMFPYPSGAGLHVGHPLGYTATDILARLKRMQGYNVLHPMGWDAFGLPAEQYAIETGTHPKITTLRNINRFRTQLKS 176 (952)
Q Consensus 97 ~i~~~~Pypng~~lHiGH~~~~~~~Di~~Ry~r~~G~~V~~~~G~D~~Glpie~~a~~~g~~~~~~~~~~~~~~~~~l~~ 176 (952)
+++=-+|-|||. ||||||++.++.-.+||.. .|.-++. +|+.. |+.-...+.+.+.++|+-
T Consensus 10 v~tRFAPsPtG~-LHiG~artAl~N~~~Ar~~--~G~fiLR---iEDTD-------------~~R~~~e~~~~I~~~L~W 70 (472)
T COG0008 10 VRTRFAPSPTGY-LHIGHARTALLNYLYARKY--GGKFILR---IEDTD-------------PERETPEAEDAILEDLEW 70 (472)
T ss_pred eEEEECcCCCCc-cchHHHHHHHHHHHHHHHh--CCEEEEE---ecCCC-------------CCCCCHHHHHHHHHHHHh
Confidence 555558999998 9999999999998888753 4544433 33333 333345677889999999
Q ss_pred cCCccccCCc-ccCCChhHHHHHHHHHHHHHHCCceeee
Q 002217 177 LGFSYDWNRE-ISTIEPAYYKWTQWIFLQLLKRGLAYQA 214 (952)
Q Consensus 177 lgi~~Dw~~~-~~T~~~~~~~~v~~~f~~L~~kGliy~~ 214 (952)
||+ +|+.. +.. .++...-.....+|.++|++|.-
T Consensus 71 LGl--~wde~~~~Q--S~r~~~Y~~~~~~Li~~G~AY~c 105 (472)
T COG0008 71 LGL--DWDEGPYYQ--SERFDIYYEYAEKLIEKGKAYVC 105 (472)
T ss_pred cCC--CCCCceeeh--hhhHHHHHHHHHHHHHCCCeEEe
Confidence 999 66673 333 25556667778899999999864
No 95
>PRK05710 glutamyl-Q tRNA(Asp) synthetase; Reviewed
Probab=96.73 E-value=0.0032 Score=69.42 Aligned_cols=93 Identities=20% Similarity=0.292 Sum_probs=64.5
Q ss_pred EEcCCCCCCCCCCCCchhHHHHHHHHHHHHHHHcCCcccccccccccChHHHHHHHHhCCCchHHHHHHHHHHHHHHHHc
Q 002217 98 VLDMFPYPSGAGLHVGHPLGYTATDILARLKRMQGYNVLHPMGWDAFGLPAEQYAIETGTHPKITTLRNINRFRTQLKSL 177 (952)
Q Consensus 98 i~~~~Pypng~~lHiGH~~~~~~~Di~~Ry~r~~G~~V~~~~G~D~~Glpie~~a~~~g~~~~~~~~~~~~~~~~~l~~l 177 (952)
++=-.|-|+|. ||+||+++.++.-.+||-. .|.-+ .=+|+.. +......+.+.+.++|+.|
T Consensus 7 ~~RFAPSPTG~-LHlG~~rtAL~n~l~Ar~~--~G~~i---LRiEDtD-------------~~R~~~~~~~~I~~dL~wl 67 (299)
T PRK05710 7 IGRFAPSPSGP-LHFGSLVAALGSWLDARAH--GGRWL---LRIEDID-------------PPREVPGAADAILADLEWL 67 (299)
T ss_pred eEEeCcCCCCc-ccHHHHHHHHHHHHHHHHc--CCEEE---EEECcCC-------------CCccchHHHHHHHHHHHHC
Confidence 33347999998 9999999999987777643 34333 3334332 2223346678899999999
Q ss_pred CCccccCC-cccCCChhHHHHHHHHHHHHHHCCceee
Q 002217 178 GFSYDWNR-EISTIEPAYYKWTQWIFLQLLKRGLAYQ 213 (952)
Q Consensus 178 gi~~Dw~~-~~~T~~~~~~~~v~~~f~~L~~kGliy~ 213 (952)
|+ +|+. .+.. .++.+.-+....+|.++|++|.
T Consensus 68 Gl--~wDe~~~~Q--S~r~~~Y~~~~~~L~~~G~aY~ 100 (299)
T PRK05710 68 GL--HWDGPVLYQ--SQRHDAYRAALDRLRAQGLVYP 100 (299)
T ss_pred CC--CCCCCceEe--eccHHHHHHHHHHHHHCCCcee
Confidence 99 6664 3332 2455666778889999999885
No 96
>PRK14703 glutaminyl-tRNA synthetase/YqeY domain fusion protein; Provisional
Probab=96.64 E-value=0.0043 Score=76.40 Aligned_cols=94 Identities=26% Similarity=0.378 Sum_probs=68.1
Q ss_pred EEEcCCCCCCCCCCCCchhHHHHHHHHHHHHHHHcCCcccccccccccChHHHHHHHHhCCCchHHHHHHHHHHHHHHHH
Q 002217 97 YVLDMFPYPSGAGLHVGHPLGYTATDILARLKRMQGYNVLHPMGWDAFGLPAEQYAIETGTHPKITTLRNINRFRTQLKS 176 (952)
Q Consensus 97 ~i~~~~Pypng~~lHiGH~~~~~~~Di~~Ry~r~~G~~V~~~~G~D~~Glpie~~a~~~g~~~~~~~~~~~~~~~~~l~~ 176 (952)
+++=-+|-|||. ||+||+++.++...+||- ..| .++.=+|+..- ......+.+.+.++|+-
T Consensus 32 v~tRFaPsPtG~-lHiGhar~alln~~~A~~--~~G---~~~LR~eDTd~-------------~r~~~e~~~~I~~dl~w 92 (771)
T PRK14703 32 VVTRFPPEPNGY-LHIGHAKSILLNFGIARD--YGG---RCHLRMDDTNP-------------ETEDTEYVEAIKDDVRW 92 (771)
T ss_pred eEEEeCcCCCCc-ccHHHHHHHHHHHHHHHH--hCC---EEEEEeCCCCC-------------CcCChHHHHHHHHHHHH
Confidence 556669999998 999999999999888874 344 33344455432 22344678999999999
Q ss_pred cCCccccCCc-ccCCChhHHHHHHHHHHHHHHCCceee
Q 002217 177 LGFSYDWNRE-ISTIEPAYYKWTQWIFLQLLKRGLAYQ 213 (952)
Q Consensus 177 lgi~~Dw~~~-~~T~~~~~~~~v~~~f~~L~~kGliy~ 213 (952)
||+. |+.. +. ..+|...-.....+|.++|++|.
T Consensus 93 LG~~--wd~~~~~--qS~~~~~y~~~a~~Li~~G~aY~ 126 (771)
T PRK14703 93 LGFD--WGEHLYY--ASDYFERMYAYAEQLIKMGLAYV 126 (771)
T ss_pred cCCC--CCCCceE--eecCHHHHHHHHHHHHHcCCccc
Confidence 9995 5432 33 33566667778889999999986
No 97
>cd00808 GluRS_core catalytic core domain of discriminating glutamyl-tRNA synthetase. Discriminating Glutamyl-tRNA synthetase (GluRS) catalytic core domain . The discriminating form of GluRS is only found in bacteria and cellular organelles. GluRS is a monomer that attaches Glu to the appropriate tRNA. Like other class I tRNA synthetases, GluRS aminoacylates the 2'-OH of the nucleotide at the 3' end of the tRNA. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. It contains the characteristic class I HIGH and KMSKS motifs, which are involved in ATP binding.
Probab=96.60 E-value=0.0051 Score=65.80 Aligned_cols=85 Identities=21% Similarity=0.272 Sum_probs=59.4
Q ss_pred CCCCCCCCCCCchhHHHHHHHHHHHHHHHcCCcccccccccccChHHHHHHHHhCCCchHHHHHHHHHHHHHHHHcCCcc
Q 002217 102 FPYPSGAGLHVGHPLGYTATDILARLKRMQGYNVLHPMGWDAFGLPAEQYAIETGTHPKITTLRNINRFRTQLKSLGFSY 181 (952)
Q Consensus 102 ~Pypng~~lHiGH~~~~~~~Di~~Ry~r~~G~~V~~~~G~D~~Glpie~~a~~~g~~~~~~~~~~~~~~~~~l~~lgi~~ 181 (952)
.|.|+|. ||+||+++.++.-+++|- ..| .++.=+|+... ..-...+.+.+.++|..||+
T Consensus 7 APsPtG~-LHlG~~~~al~n~l~ar~--~~G---~~ilRieDtd~-------------~r~~~~~~~~i~~dL~wlGl-- 65 (239)
T cd00808 7 APSPTGF-LHIGGARTALFNYLFARK--HGG---KFILRIEDTDQ-------------ERSVPEAEEAILEALKWLGL-- 65 (239)
T ss_pred CCCCCCc-ccHHHHHHHHHHHHHHHH--cCC---eEEEEECcCCC-------------CCCchHHHHHHHHHHHHcCC--
Confidence 7999998 999999999999887773 344 44455565331 22234567888899999999
Q ss_pred ccCC---------cccCCChhHHHHHHHHHHHHHHCC
Q 002217 182 DWNR---------EISTIEPAYYKWTQWIFLQLLKRG 209 (952)
Q Consensus 182 Dw~~---------~~~T~~~~~~~~v~~~f~~L~~kG 209 (952)
||+. .+..+ +....-.....+|.++|
T Consensus 66 ~~d~~~~~~g~~~~~~QS--~r~~~y~~~~~~L~~~g 100 (239)
T cd00808 66 DWDEGPDVGGPYGPYRQS--ERLEIYRKYAEKLLEKG 100 (239)
T ss_pred CCCcCCccCCCCCCEeee--CCHHHHHHHHHHHHHcC
Confidence 6666 44443 34444556678888888
No 98
>cd00418 GlxRS_core catalytic core domain of glutamyl-tRNA and glutaminyl-tRNA synthetase. Glutamyl-tRNA synthetase(GluRS)/Glutaminyl-tRNA synthetase (GlnRS) cataytic core domain. These enzymes attach Glu or Gln, respectively, to the appropriate tRNA. Like other class I tRNA synthetases, they aminoacylate the 2'-OH of the nucleotide at the 3' end of the tRNA. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. It contains the characteristic class I HIGH and KMSKS motifs, which are involved in ATP binding. These enzymes function as monomers. Archaea, cellular organelles, and some bacteria lack GlnRS. In these cases, the "non-discriminating" form of GluRS aminoacylates both tRNA(Glu) and tRNA(Gln) with Glu, which is converted to Gln when appropriate by a transamidation enzyme. The discriminating form of GluRS differs from GlnRS and the non-discriminating form of GluRS in their C-terminal anti-codon bind
Probab=96.57 E-value=0.0048 Score=65.49 Aligned_cols=85 Identities=24% Similarity=0.346 Sum_probs=60.2
Q ss_pred CCCCCCCCCCCchhHHHHHHHHHHHHHHHcCCcccccccccccChHHHHHHHHhCCCchHHHHHHHHHHHHHHHHcCCcc
Q 002217 102 FPYPSGAGLHVGHPLGYTATDILARLKRMQGYNVLHPMGWDAFGLPAEQYAIETGTHPKITTLRNINRFRTQLKSLGFSY 181 (952)
Q Consensus 102 ~Pypng~~lHiGH~~~~~~~Di~~Ry~r~~G~~V~~~~G~D~~Glpie~~a~~~g~~~~~~~~~~~~~~~~~l~~lgi~~ 181 (952)
.|-|||. ||+||+++.++.-.+||-. .|.-++ =+|+... ......+.+.+.++|+.||+
T Consensus 7 APsPtG~-lHlG~~r~al~n~l~Ar~~--~G~~iL---RieDtD~-------------~R~~~~~~~~I~~dL~wlGl-- 65 (230)
T cd00418 7 APSPTGY-LHIGHARTALFNFAFARKY--GGKFIL---RIEDTDP-------------ERSRPEYVESILEDLKWLGL-- 65 (230)
T ss_pred CCCCCCc-ccHHHHHHHHHHHHHHHHc--CCeEEE---EeCcCCC-------------CCCChHHHHHHHHHHHHcCC--
Confidence 7999998 9999999999998888753 444333 3344332 22234667889999999999
Q ss_pred ccCC-cccCCChhHHHHHHHHHHHHHHCC
Q 002217 182 DWNR-EISTIEPAYYKWTQWIFLQLLKRG 209 (952)
Q Consensus 182 Dw~~-~~~T~~~~~~~~v~~~f~~L~~kG 209 (952)
+|+. .+.. .++.+.-+....+|.++|
T Consensus 66 ~wd~~~~~Q--S~r~~~y~~~~~~L~~~g 92 (230)
T cd00418 66 DWDEGPYRQ--SDRFDLYRAYAEELIKKG 92 (230)
T ss_pred CCCCCeeeh--hcCHHHHHHHHHHHHHcC
Confidence 5655 3332 245555667888899999
No 99
>PLN02627 glutamyl-tRNA synthetase
Probab=96.54 E-value=0.005 Score=72.59 Aligned_cols=91 Identities=26% Similarity=0.331 Sum_probs=64.4
Q ss_pred cCCCCCCCCCCCCchhHHHHHHHHHHHHHHHcCCcccccccccccChHHHHHHHHhCCCchHHHHHHHHHHHHHHHHcCC
Q 002217 100 DMFPYPSGAGLHVGHPLGYTATDILARLKRMQGYNVLHPMGWDAFGLPAEQYAIETGTHPKITTLRNINRFRTQLKSLGF 179 (952)
Q Consensus 100 ~~~Pypng~~lHiGH~~~~~~~Di~~Ry~r~~G~~V~~~~G~D~~Glpie~~a~~~g~~~~~~~~~~~~~~~~~l~~lgi 179 (952)
==.|-|+|. ||+||+++.++.-.+|| ...|.-++.+ |+... ......+.+.+.++|+-||+
T Consensus 49 RFAPSPTG~-LHiG~aRtAL~n~l~Ar--~~gG~fiLRI---EDTD~-------------~R~~~e~~~~I~~~L~WLGl 109 (535)
T PLN02627 49 RFAPSPTGN-LHVGGARTALFNYLFAR--SKGGKFVLRI---EDTDL-------------ARSTKESEEAVLRDLKWLGL 109 (535)
T ss_pred EeCCCCCCC-ccHHHHHHHHHHHHHHH--HhCCEEEEEe---CcCCC-------------CCCChHHHHHHHHHHHHcCC
Confidence 337899998 99999999999988887 4455544433 33322 22345677889999999999
Q ss_pred ccccCCc---------ccCCChhHHHHHHHHHHHHHHCCceee
Q 002217 180 SYDWNRE---------ISTIEPAYYKWTQWIFLQLLKRGLAYQ 213 (952)
Q Consensus 180 ~~Dw~~~---------~~T~~~~~~~~v~~~f~~L~~kGliy~ 213 (952)
|||.. |+- .+..+.-.....+|.++|.+|.
T Consensus 110 --~wDegp~~gg~~gpy~Q--SeR~~~Y~~~a~~Li~~G~AY~ 148 (535)
T PLN02627 110 --DWDEGPDVGGEYGPYRQ--SERNAIYKQYAEKLLESGHVYP 148 (535)
T ss_pred --CCCcCcccCCCCCCeee--eccHHHHHHHHHHHHHcCCeee
Confidence 67653 222 2344555677889999999986
No 100
>PRK12410 glutamylglutaminyl-tRNA synthetase; Provisional
Probab=96.45 E-value=0.0062 Score=70.46 Aligned_cols=90 Identities=17% Similarity=0.257 Sum_probs=63.6
Q ss_pred CCCCCCCCCCCchhHHHHHHHHHHHHHHHcCCcccccccccccChHHHHHHHHhCCCchHHHHHHHHHHHHHHHHcCCcc
Q 002217 102 FPYPSGAGLHVGHPLGYTATDILARLKRMQGYNVLHPMGWDAFGLPAEQYAIETGTHPKITTLRNINRFRTQLKSLGFSY 181 (952)
Q Consensus 102 ~Pypng~~lHiGH~~~~~~~Di~~Ry~r~~G~~V~~~~G~D~~Glpie~~a~~~g~~~~~~~~~~~~~~~~~l~~lgi~~ 181 (952)
.|-|+|. ||+||+++.++.-.+||- ..|.-++. +|+... ......+.+.+.+.|+-||+
T Consensus 5 APSPTG~-LHiG~artAL~n~l~Ar~--~gG~fiLR---iEDTD~-------------~R~~~e~~~~I~~~L~WlGl-- 63 (433)
T PRK12410 5 APSPTGD-MHIGNLRAAIFNYIVAKQ--QNEDFLIR---IEDTDK-------------ERNIEGKDKEILEILNLFGI-- 63 (433)
T ss_pred CCCCCCc-ccHHHHHHHHHHHHHHHH--cCCEEEEE---eCcCCC-------------CcCChHHHHHHHHHHHHcCC--
Confidence 6999998 999999999988777763 34544443 333332 22344667889999999999
Q ss_pred ccCCcccCCChhHHHHHHHHHHHHHHCCceeee
Q 002217 182 DWNREISTIEPAYYKWTQWIFLQLLKRGLAYQA 214 (952)
Q Consensus 182 Dw~~~~~T~~~~~~~~v~~~f~~L~~kGliy~~ 214 (952)
||+..|..++ ..+.-.....+|.++|.+|.-
T Consensus 64 ~wDe~y~QSe--R~~~Y~~~a~~Li~~G~AY~C 94 (433)
T PRK12410 64 SWDKLVYQSE--NLKFHRQMAEKLLSEKKAFAC 94 (433)
T ss_pred CCCCCeehhc--cHHHHHHHHHHHHHcCCeeee
Confidence 5666665543 334456678899999999863
No 101
>PRK14895 gltX glutamyl-tRNA synthetase; Provisional
Probab=96.44 E-value=0.0066 Score=71.43 Aligned_cols=92 Identities=27% Similarity=0.365 Sum_probs=65.6
Q ss_pred cCCCCCCCCCCCCchhHHHHHHHHHHHHHHHcCCcccccccccccChHHHHHHHHhCCCchHHHHHHHHHHHHHHHHcCC
Q 002217 100 DMFPYPSGAGLHVGHPLGYTATDILARLKRMQGYNVLHPMGWDAFGLPAEQYAIETGTHPKITTLRNINRFRTQLKSLGF 179 (952)
Q Consensus 100 ~~~Pypng~~lHiGH~~~~~~~Di~~Ry~r~~G~~V~~~~G~D~~Glpie~~a~~~g~~~~~~~~~~~~~~~~~l~~lgi 179 (952)
--.|-|+|. ||+||+++.++.-.+|| ...|.-++.+ |+.. +......+.+.+.+.|+-||+
T Consensus 8 RFAPSPTG~-lHiG~artAL~n~l~Ar--~~gG~fiLRI---EDTD-------------~~R~~~~~~~~i~~~L~WLGl 68 (513)
T PRK14895 8 RFAPSPTGF-LHIGSARTALFNYLFAR--HHNGKFLLRI---EDTD-------------KERSTKEAVEAIFSGLKWLGL 68 (513)
T ss_pred eeCCCCCCC-ccHHHHHHHHHHHHHHH--HcCCEEEEEE---CCCC-------------ccccChHHHHHHHHHHHHcCC
Confidence 337999998 99999999999988888 4456554433 3332 222345677889999999999
Q ss_pred ccccC-CcccCCChhHHHHHHHHHHHHHHCCceeee
Q 002217 180 SYDWN-REISTIEPAYYKWTQWIFLQLLKRGLAYQA 214 (952)
Q Consensus 180 ~~Dw~-~~~~T~~~~~~~~v~~~f~~L~~kGliy~~ 214 (952)
||+ .+|+.+ +....-.....+|.++|.+|.-
T Consensus 69 --~wDe~py~QS--eR~~~Y~~~a~~Li~~G~AY~C 100 (513)
T PRK14895 69 --DWNGEVIFQS--KRNNLYKEAALKLLQNGKAYYC 100 (513)
T ss_pred --CCCCCceeEe--CcHHHHHHHHHHHHHcCCeEEe
Confidence 666 334433 3344556778899999999863
No 102
>TIGR00464 gltX_bact glutamyl-tRNA synthetase, bacterial family. The glutamyl-tRNA synthetases of the eukaryotic cytosol and of the Archaea are more similar to glutaminyl-tRNA synthetases than to bacterial glutamyl-tRNA synthetases. This alignment models just the bacterial and mitochondrial forms of the enzyme. In many species, the charging of tRNA(gln) proceeds first through misacylation with Glu and then transamidation. For this reason, glutamyl-tRNA synthetases may act on both tRNA(gln) and tRNA(glu). This model is highly specific. Proteins with positive scores below the trusted cutoff may be fragments rather than full-length sequences.
Probab=96.41 E-value=0.0064 Score=71.77 Aligned_cols=90 Identities=22% Similarity=0.301 Sum_probs=63.1
Q ss_pred CCCCCCCCCCCchhHHHHHHHHHHHHHHHcCCcccccccccccChHHHHHHHHhCCCchHHHHHHHHHHHHHHHHcCCcc
Q 002217 102 FPYPSGAGLHVGHPLGYTATDILARLKRMQGYNVLHPMGWDAFGLPAEQYAIETGTHPKITTLRNINRFRTQLKSLGFSY 181 (952)
Q Consensus 102 ~Pypng~~lHiGH~~~~~~~Di~~Ry~r~~G~~V~~~~G~D~~Glpie~~a~~~g~~~~~~~~~~~~~~~~~l~~lgi~~ 181 (952)
.|-|+|. |||||+++.++.-.+|| ...|.-+ .=+|+... ......+.+.+.++|+-||+
T Consensus 7 APsPtG~-lHiG~~rtal~n~l~Ar--~~~G~~i---LRieDtD~-------------~R~~~~~~~~i~~~L~wlGl-- 65 (470)
T TIGR00464 7 APSPTGY-LHIGGARTALFNYLFAK--HTGGEFI---LRIEDTDL-------------ERNIEEAEEAILEGLKWLGI-- 65 (470)
T ss_pred CCCCCCc-ccHHHHHHHHHHHHHHH--HcCCEEE---EEeCcCCC-------------ccCChHHHHHHHHHHHHCCC--
Confidence 7999998 99999999999988887 3345333 33444332 22344577889999999999
Q ss_pred ccC-CcccCCChhHHHHHHHHHHHHHHCCceeee
Q 002217 182 DWN-REISTIEPAYYKWTQWIFLQLLKRGLAYQA 214 (952)
Q Consensus 182 Dw~-~~~~T~~~~~~~~v~~~f~~L~~kGliy~~ 214 (952)
+|+ .+|..+ +..+.-+.+..+|.++|++|.-
T Consensus 66 ~~de~~~~QS--~r~~~y~~~~~~L~~~g~aY~C 97 (470)
T TIGR00464 66 SWDEGPYYQS--QRLDIYKKYAKELLEEGLAYRC 97 (470)
T ss_pred CCCCCeeehh--CCHHHHHHHHHHHHHcCCEEec
Confidence 666 444443 3334446677889999999863
No 103
>PLN02859 glutamine-tRNA ligase
Probab=96.39 E-value=0.0077 Score=73.62 Aligned_cols=95 Identities=22% Similarity=0.328 Sum_probs=66.0
Q ss_pred EEEcCCCCCCCCCCCCchhHHHHHHHHHHHHHHHcCCcccccccccccChHHHHHHHHhCCCchHHHHHHHHHHHHHHHH
Q 002217 97 YVLDMFPYPSGAGLHVGHPLGYTATDILARLKRMQGYNVLHPMGWDAFGLPAEQYAIETGTHPKITTLRNINRFRTQLKS 176 (952)
Q Consensus 97 ~i~~~~Pypng~~lHiGH~~~~~~~Di~~Ry~r~~G~~V~~~~G~D~~Glpie~~a~~~g~~~~~~~~~~~~~~~~~l~~ 176 (952)
+++-=||-|||. |||||+++.++.-.+||.. .|. +..=+|+.. |......+.+.+.++|+-
T Consensus 265 V~tRFaPsPtG~-LHiGharaallN~~~Ar~~--~G~---~~LRieDTd-------------p~r~~~e~~~~I~edL~W 325 (788)
T PLN02859 265 VYTRFPPEPNGY-LHIGHAKAMFVDFGLAKER--GGC---CYLRFDDTN-------------PEAEKKEYIDHIEEIVEW 325 (788)
T ss_pred eEEEeCCCCCCc-ccHHHHHHHHHHHHHHHHh--CCE---EEEEecCCC-------------CCccchHHHHHHHHHHHH
Confidence 344458999998 9999999999998888864 443 333344443 333455778999999999
Q ss_pred cCCccccCCcccCCChhHHHHHHHHHHHHHHCCceeee
Q 002217 177 LGFSYDWNREISTIEPAYYKWTQWIFLQLLKRGLAYQA 214 (952)
Q Consensus 177 lgi~~Dw~~~~~T~~~~~~~~v~~~f~~L~~kGliy~~ 214 (952)
||+ +|+..+.++ +|....-....+|.++|++|.-
T Consensus 326 LG~--~~d~~~~qS--d~f~~~Y~~A~~Li~~G~AY~C 359 (788)
T PLN02859 326 MGW--EPFKITYTS--DYFQELYELAVELIRRGHAYVD 359 (788)
T ss_pred cCC--CCCCccccc--HhHHHHHHHHHHHHHcCCeEec
Confidence 997 666665554 3332223345679999999873
No 104
>KOG1147 consensus Glutamyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=96.06 E-value=0.018 Score=65.97 Aligned_cols=98 Identities=24% Similarity=0.301 Sum_probs=73.9
Q ss_pred EEEcCCCCCCCCCCCCchhHHHHHHHHHHHHHHHcCCcccccccccccChHHHHHHHHhCCCchHHHHHHHHHHHHHHHH
Q 002217 97 YVLDMFPYPSGAGLHVGHPLGYTATDILARLKRMQGYNVLHPMGWDAFGLPAEQYAIETGTHPKITTLRNINRFRTQLKS 176 (952)
Q Consensus 97 ~i~~~~Pypng~~lHiGH~~~~~~~Di~~Ry~r~~G~~V~~~~G~D~~Glpie~~a~~~g~~~~~~~~~~~~~~~~~l~~ 176 (952)
+++--||=|||. ||||||...++- -|...+ |+=..++-||+.- |..-..++.+.+.+++..
T Consensus 201 Vv~RFPPEpSGy-LHIGHAKAALLN----qYfa~~-~~G~LIvRFDDTN-------------PaKE~~eFe~~IleDl~~ 261 (712)
T KOG1147|consen 201 VVTRFPPEPSGY-LHIGHAKAALLN----QYFAQA-YQGKLIVRFDDTN-------------PAKENEEFEDVILEDLSL 261 (712)
T ss_pred eEEecCCCCCce-eehhhHHHHHHH----HHHHHh-cCceEEEEecCCC-------------cchhhHHHHHHHHHHHHH
Confidence 455568999998 999999886543 343332 3334566777643 333345667888999999
Q ss_pred cCCccccCCcccCCChhHHHHHHHHHHHHHHCCceeeeccc
Q 002217 177 LGFSYDWNREISTIEPAYYKWTQWIFLQLLKRGLAYQAEVP 217 (952)
Q Consensus 177 lgi~~Dw~~~~~T~~~~~~~~v~~~f~~L~~kGliy~~~~~ 217 (952)
|||..| ..|...+|-..+.....+|.+.|-+|-...|
T Consensus 262 LgIkpd----~~TyTSDyF~~i~dycv~likeGKAYvDDTp 298 (712)
T KOG1147|consen 262 LGIKPD----RVTYTSDYFDEIMDYCVKLIKEGKAYVDDTP 298 (712)
T ss_pred hCcCcc----eeeechhhHHHHHHHHHHHHhcCcccccCCc
Confidence 999888 6677788999999999999999999988766
No 105
>PRK01406 gltX glutamyl-tRNA synthetase; Reviewed
Probab=96.00 E-value=0.013 Score=69.11 Aligned_cols=90 Identities=26% Similarity=0.300 Sum_probs=63.2
Q ss_pred CCCCCCCCCCCCchhHHHHHHHHHHHHHHHcCCcccccccccccChHHHHHHHHhCCCchHHHHHHHHHHHHHHHHcCCc
Q 002217 101 MFPYPSGAGLHVGHPLGYTATDILARLKRMQGYNVLHPMGWDAFGLPAEQYAIETGTHPKITTLRNINRFRTQLKSLGFS 180 (952)
Q Consensus 101 ~~Pypng~~lHiGH~~~~~~~Di~~Ry~r~~G~~V~~~~G~D~~Glpie~~a~~~g~~~~~~~~~~~~~~~~~l~~lgi~ 180 (952)
-.|-|+|. ||+||+++.++.-.+||- ..|.-++ =+|+.. +......+.+.+.++|+-||+
T Consensus 9 fAPSPtG~-lHiG~~rtal~n~l~Ar~--~~G~fiL---RieDtD-------------~~R~~~~~~~~i~~~L~wlGl- 68 (476)
T PRK01406 9 FAPSPTGY-LHIGGARTALFNWLFARH--HGGKFIL---RIEDTD-------------QERSTEEAEEAILEGLKWLGL- 68 (476)
T ss_pred eCCCCCCc-ccHHHHHHHHHHHHHHHH--cCCEEEE---EeCcCC-------------CCCCChHHHHHHHHHHHHCCC-
Confidence 37999998 999999999888777764 3443333 333333 223455677889999999999
Q ss_pred cccCCc--------ccCCChhHHHHHHHHHHHHHHCCceee
Q 002217 181 YDWNRE--------ISTIEPAYYKWTQWIFLQLLKRGLAYQ 213 (952)
Q Consensus 181 ~Dw~~~--------~~T~~~~~~~~v~~~f~~L~~kGliy~ 213 (952)
+||.. |+. .+..+.-.....+|.++|++|.
T Consensus 69 -~~De~p~~~~~gpy~Q--S~r~~~y~~~~~~L~~~g~aY~ 106 (476)
T PRK01406 69 -DWDEGPDGGPYGPYRQ--SERLDIYKEYAEQLLEEGKAYY 106 (476)
T ss_pred -CCCCCCccCCCCceeh--hcCHHHHHHHHHHHHHcCCeee
Confidence 66543 333 2444566778889999999986
No 106
>PF00750 tRNA-synt_1d: tRNA synthetases class I (R); InterPro: IPR015945 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. This entry represents the core region of arginyl-tRNA synthetase (6.1.1.19 from EC), which has been crystallized and preliminary X-ray crystallographic analysis of yeast arginyl-tRNA synthetase-yeast tRNAArg complexes is available []. ; GO: 0000166 nucleotide binding, 0004814 arginine-tRNA ligase activity, 0005524 ATP binding, 0006420 arginyl-tRNA aminoacylation, 0005737 cytoplasm; PDB: 2ZUE_A 2ZUF_A 3FNR_A 1IQ0_A 1F7V_A 1F7U_A 1BS2_A 3GDZ_B.
Probab=95.24 E-value=0.0084 Score=68.41 Aligned_cols=27 Identities=37% Similarity=0.554 Sum_probs=22.3
Q ss_pred cc-ccccCCCCCCChhhHHhhhCchhhh
Q 002217 707 AH-KMSKSRGNVVNPDDVVTEYGADSLR 733 (952)
Q Consensus 707 g~-KMSKSkGNvV~P~eii~~YGaDalR 733 (952)
|+ |||+.+||+|..+|+|++-...+.+
T Consensus 285 gk~~mstR~G~~i~l~dllde~~~~a~~ 312 (354)
T PF00750_consen 285 GKVKMSTRKGNVITLDDLLDEAVERALE 312 (354)
T ss_dssp BEESS-TTTTSSTBHHHHHHHHHHHHHH
T ss_pred CCccccCCCCCceEHHHHHHHHHHHHHH
Confidence 55 9999999999999999976666666
No 107
>PRK06039 ileS isoleucyl-tRNA synthetase; Reviewed
Probab=94.77 E-value=0.031 Score=72.14 Aligned_cols=79 Identities=25% Similarity=0.476 Sum_probs=64.9
Q ss_pred HHHHHHHHHHHHHHCCceeeeccccccCCCCCcccCchhhccCccccCCCCeEEeeccccchhhhhhhhHhhccCCCCCC
Q 002217 194 YYKWTQWIFLQLLKRGLAYQAEVPVNWCPALGTVLANEEVVDGVSERGGHPVIRKPMRQWMLKITEYADRLLDDLDDLDW 273 (952)
Q Consensus 194 ~~~~v~~~f~~L~~kGliy~~~~~v~wc~~~~t~ls~~Ev~~~~~~~~~~~~~~~~~~~~~~~i~~y~~~l~~~l~~~~~ 273 (952)
..++-..+...|.++|++.......+ .+++|+|||.|++.+..+|||++++++++++++.+++.+|
T Consensus 361 v~eA~~~Ii~~L~~~g~l~~~~~~~h--------------~~p~c~R~g~pv~~~~~~qWFi~~~~~k~~ll~~~~~i~~ 426 (975)
T PRK06039 361 VKDADKEIIRDLKERGLLFKAETYEH--------------SYPHCWRCDTPLIYYATESWFIRVTKIKDRMLELNQKINW 426 (975)
T ss_pred HHHhhHHHHHHHHhCCCEeeeeeecC--------------CCCEeCCCCCEEEEEecCeeeEecHHHHHHHHHhhCCeEE
Confidence 34556778889999999987654321 2467888899999999999999999999999999998886
Q ss_pred -chHHHH-HHHhhhc
Q 002217 274 -PESVKE-MQRNWIG 286 (952)
Q Consensus 274 -p~~~~~-~~~~~i~ 286 (952)
|+.+++ ...+||.
T Consensus 427 ~P~~~~~~~~~~wl~ 441 (975)
T PRK06039 427 YPEHIKDGRFGKWLE 441 (975)
T ss_pred ECcccchhhHHHHHh
Confidence 999988 8889984
No 108
>COG0060 IleS Isoleucyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=94.28 E-value=0.051 Score=68.04 Aligned_cols=77 Identities=19% Similarity=0.367 Sum_probs=65.0
Q ss_pred HHHHHHHHHHHHCCceeeeccccccCCCCCcccCchhhccCccccCCCCeEEeeccccchhhhhhhhHhhccCCCCCC-c
Q 002217 196 KWTQWIFLQLLKRGLAYQAEVPVNWCPALGTVLANEEVVDGVSERGGHPVIRKPMRQWMLKITEYADRLLDDLDDLDW-P 274 (952)
Q Consensus 196 ~~v~~~f~~L~~kGliy~~~~~v~wc~~~~t~ls~~Ev~~~~~~~~~~~~~~~~~~~~~~~i~~y~~~l~~~l~~~~~-p 274 (952)
++-..+...|.++|.+....+..+ .++.||||..|++.|..+|||++++..++++++.+++..| |
T Consensus 375 dAn~~Ii~~Lk~~g~Ll~~e~i~H--------------sYPhcWR~ktPlIyRAt~QWFi~v~~~r~~~l~~i~~v~w~P 440 (933)
T COG0060 375 DANKKIIEDLKEKGNLLKSEKIEH--------------SYPHCWRTKTPLIYRATPQWFVSVDKLRDKMLKEINKVNWVP 440 (933)
T ss_pred cCCHHHHHHHHhCCceeeeeeEEe--------------CCCcccCCCCeeEEeecchheeEHHHHHHHHHHHHhcceEEC
Confidence 556678888888888877655432 2678999999999999999999999999999988888888 9
Q ss_pred hHHHHHHHhhhc
Q 002217 275 ESVKEMQRNWIG 286 (952)
Q Consensus 275 ~~~~~~~~~~i~ 286 (952)
+..+....+||.
T Consensus 441 ~~~~~R~~~mve 452 (933)
T COG0060 441 DWGKNRFGNMVE 452 (933)
T ss_pred hhHHHHHHHHHc
Confidence 989999999983
No 109
>PLN02882 aminoacyl-tRNA ligase
Probab=94.24 E-value=0.044 Score=71.48 Aligned_cols=78 Identities=23% Similarity=0.427 Sum_probs=63.9
Q ss_pred HHHHHHHHHHHHHCCceeeeccccccCCCCCcccCchhhccCccccCCCCeEEeeccccchhhhhhhhHhhccCCCCCC-
Q 002217 195 YKWTQWIFLQLLKRGLAYQAEVPVNWCPALGTVLANEEVVDGVSERGGHPVIRKPMRQWMLKITEYADRLLDDLDDLDW- 273 (952)
Q Consensus 195 ~~~v~~~f~~L~~kGliy~~~~~v~wc~~~~t~ls~~Ev~~~~~~~~~~~~~~~~~~~~~~~i~~y~~~l~~~l~~~~~- 273 (952)
.++-..+...|.++|++.......+ .++.||||+.|++.+..+|||++++.+++++++.++...|
T Consensus 383 ~eA~~~Ii~~Lk~~g~L~~~~~~~H--------------syp~cwR~~tpli~~a~~qWFi~~~~~k~~~l~~~~~i~w~ 448 (1159)
T PLN02882 383 KDADKDIIAAIKAKGRLVKSGSITH--------------SYPFCWRSDTPLIYRAVPSWFVKVEEIKDRLLENNKQTYWV 448 (1159)
T ss_pred HHhhHHHHHHHHHCCCccceeeeec--------------CCCEeeCCCCEEEEEecceeEEEcHHHHHHHHHhhCCcEEE
Confidence 3455667788999999876644321 2477899999999999999999999999999999888888
Q ss_pred chHHH-HHHHhhhc
Q 002217 274 PESVK-EMQRNWIG 286 (952)
Q Consensus 274 p~~~~-~~~~~~i~ 286 (952)
|+.++ ....+||.
T Consensus 449 P~~~~~~r~~~wl~ 462 (1159)
T PLN02882 449 PDYVKEKRFHNWLE 462 (1159)
T ss_pred CCcchhhHHHHHHh
Confidence 99994 68899984
No 110
>TIGR00392 ileS isoleucyl-tRNA synthetase. The isoleucyl tRNA synthetase (IleS) is a class I amino acyl-tRNA ligase and is particularly closely related to the valyl tRNA synthetase. This model may recognize IleS from every species, including eukaryotic cytosolic and mitochondrial forms.
Probab=93.92 E-value=0.072 Score=68.12 Aligned_cols=77 Identities=27% Similarity=0.422 Sum_probs=63.6
Q ss_pred HHHHHHHHHHHHCCceeeeccccccCCCCCcccCchhhccCccccCCCCeEEeeccccchhhhhhhhHhhccCCCCC-Cc
Q 002217 196 KWTQWIFLQLLKRGLAYQAEVPVNWCPALGTVLANEEVVDGVSERGGHPVIRKPMRQWMLKITEYADRLLDDLDDLD-WP 274 (952)
Q Consensus 196 ~~v~~~f~~L~~kGliy~~~~~v~wc~~~~t~ls~~Ev~~~~~~~~~~~~~~~~~~~~~~~i~~y~~~l~~~l~~~~-~p 274 (952)
+.-..+...|.++|++.......+ .+++|+||+.+++.+...|||++++.+++.+++.+++.+ +|
T Consensus 381 ~a~~~ii~~L~~~g~l~~~~~~~h--------------~~p~~~R~~~~v~~~~~~QWFi~~~~~k~~~l~~~~~i~~~P 446 (861)
T TIGR00392 381 KANKIIIEQLKDKGLLLKAEKITH--------------SYPHCWRTKTPVIYRATEQWFIKTKDIKDQMLEQIKKVNWVP 446 (861)
T ss_pred HhHHHHHHHHHhCCCeeeeeeEec--------------CCCccCCCCCEEEEecCccccEEcHHHHHHHHHHhCCcEEEC
Confidence 455678888999998766543322 135788999999999999999999999999999999887 59
Q ss_pred hHHHHHHHhhhc
Q 002217 275 ESVKEMQRNWIG 286 (952)
Q Consensus 275 ~~~~~~~~~~i~ 286 (952)
+..+....+||.
T Consensus 447 ~~~~~~~~~~l~ 458 (861)
T TIGR00392 447 EWGEGRFGNWLE 458 (861)
T ss_pred chHHHHHHHHHh
Confidence 999999999984
No 111
>KOG4426 consensus Arginyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=93.73 E-value=0.38 Score=54.15 Aligned_cols=128 Identities=22% Similarity=0.257 Sum_probs=85.7
Q ss_pred EEEEcCCCCCCCC-CCCCchhHHHHHHHHHHHHHHHcCCcccccccccc----cChHHHHHHHHh---------------
Q 002217 96 FYVLDMFPYPSGA-GLHVGHPLGYTATDILARLKRMQGYNVLHPMGWDA----FGLPAEQYAIET--------------- 155 (952)
Q Consensus 96 f~i~~~~Pypng~-~lHiGH~~~~~~~Di~~Ry~r~~G~~V~~~~G~D~----~Glpie~~a~~~--------------- 155 (952)
-++.| +--||-. .+|+||+|..++.|.++|.....|++|+.+--.-+ +|+-|+..-.+-
T Consensus 189 rvlVD-FSSPNIAKeMHVGHLRSTIIGdsl~RllE~~~~dVlR~NHvGDWGTQFGMLIahL~dkFPd~l~vsp~IgDLQv 267 (656)
T KOG4426|consen 189 RVLVD-FSSPNIAKEMHVGHLRSTIIGDSLCRLLEFSGVDVLRRNHVGDWGTQFGMLIAHLFDKFPDYLSVSPPIGDLQV 267 (656)
T ss_pred eEEEe-cCCCcHHHHhhhhhhhhhhHhHHHHHHHHhcCcceEeeccccchHHHHHHHHHHHHHhCCchhccCCCchhHHH
Confidence 34444 5666643 39999999999999999999999999986543333 455454322210
Q ss_pred ---------------------------CCCc------hHHHHHHHHHHHHHHHHcCCccccCCcccCCChhHHHHHHHHH
Q 002217 156 ---------------------------GTHP------KITTLRNINRFRTQLKSLGFSYDWNREISTIEPAYYKWTQWIF 202 (952)
Q Consensus 156 ---------------------------g~~~------~~~~~~~~~~~~~~l~~lgi~~Dw~~~~~T~~~~~~~~v~~~f 202 (952)
|-.| ..+|+-..+.+..-.++|.|+.-= --..-|...+..+.
T Consensus 268 FYkeSKkrFD~deeFKkrAyq~VV~LQggdp~~~kAW~~ICdvSr~ef~kvY~rLdi~l~e-----~GESFYq~~m~~vv 342 (656)
T KOG4426|consen 268 FYKESKKRFDEDEEFKKRAYQAVVRLQGGDPDIRKAWALICDVSRKEFQKVYNRLDISLKE-----RGESFYQDRMAEVV 342 (656)
T ss_pred HHHHHHhccCcCHHHHHHHHHHeeecccCCChHHHHHHHHHHhhHHHHHHHHHHhcchHhh-----cchhhhhhHHHHHH
Confidence 1111 112444456677778888887741 12235667788899
Q ss_pred HHHHHCCceeeec-cccccCCCCCcccC
Q 002217 203 LQLLKRGLAYQAE-VPVNWCPALGTVLA 229 (952)
Q Consensus 203 ~~L~~kGliy~~~-~~v~wc~~~~t~ls 229 (952)
..|-.+|++...+ +.+.|-+.|.-+|.
T Consensus 343 eel~~kglvee~~Gr~i~f~~g~~IPLt 370 (656)
T KOG4426|consen 343 EELKSKGLVEEDDGRRIMFPEGCDIPLT 370 (656)
T ss_pred HHHhcCCceeecCCceEeccCCCCcceE
Confidence 9999999999876 45888888876654
No 112
>PTZ00427 isoleucine-tRNA ligase, putative; Provisional
Probab=93.64 E-value=0.088 Score=68.69 Aligned_cols=77 Identities=17% Similarity=0.378 Sum_probs=63.2
Q ss_pred HHHHHHHHHHHHCCceeeeccccccCCCCCcccCchhhccCccccCCCCeEEeeccccchhhhhhhhHhhccCCCCCC-c
Q 002217 196 KWTQWIFLQLLKRGLAYQAEVPVNWCPALGTVLANEEVVDGVSERGGHPVIRKPMRQWMLKITEYADRLLDDLDDLDW-P 274 (952)
Q Consensus 196 ~~v~~~f~~L~~kGliy~~~~~v~wc~~~~t~ls~~Ev~~~~~~~~~~~~~~~~~~~~~~~i~~y~~~l~~~l~~~~~-p 274 (952)
++-..+...|.++|++.......+ .++.||||+.|++.+..+|||++++..++++++..+...| |
T Consensus 488 dA~~~Ii~~Lk~~g~L~~~e~~~H--------------~yP~cwR~~tpli~~a~~QWFI~~~~~k~~~l~~~~~i~w~P 553 (1205)
T PTZ00427 488 EADNVIKKKLKNENRLLSNNTIVH--------------SYPFCWRSDTPLIYRAIPAWFIRVSNSTNELVKNNETTYWIP 553 (1205)
T ss_pred HhHHHHHHHHHhCCCeeeeeeeec--------------cCCEeCCCCCEEEEEecceeEEeCcHHHHHHHHcCCccEEeC
Confidence 445567788999999987654321 2467889999999999999999999999999998888888 9
Q ss_pred hHH-HHHHHhhhc
Q 002217 275 ESV-KEMQRNWIG 286 (952)
Q Consensus 275 ~~~-~~~~~~~i~ 286 (952)
+.+ +..-.+||.
T Consensus 554 ~~~~~~r~~~wl~ 566 (1205)
T PTZ00427 554 AHIKEKKFHNWIK 566 (1205)
T ss_pred chhhHhHHHHHHh
Confidence 988 578899984
No 113
>TIGR00422 valS valyl-tRNA synthetase. The valyl-tRNA synthetase (ValS) is a class I amino acyl-tRNA ligase and is particularly closely related to the isoleucyl tRNA synthetase.
Probab=93.54 E-value=0.086 Score=67.40 Aligned_cols=78 Identities=23% Similarity=0.394 Sum_probs=63.7
Q ss_pred HHHHHHHHHHHHHCCceeeeccccccCCCCCcccCchhhccCccccCCCCeEEeeccccchhhhhhhhHhhccCCC--CC
Q 002217 195 YKWTQWIFLQLLKRGLAYQAEVPVNWCPALGTVLANEEVVDGVSERGGHPVIRKPMRQWMLKITEYADRLLDDLDD--LD 272 (952)
Q Consensus 195 ~~~v~~~f~~L~~kGliy~~~~~v~wc~~~~t~ls~~Ev~~~~~~~~~~~~~~~~~~~~~~~i~~y~~~l~~~l~~--~~ 272 (952)
.++-..+...|.++|++...... +...+.|++||.+++.+...||||+++++++++++.+++ ..
T Consensus 314 ~~ar~~i~~~L~~~g~l~~~~~~--------------~~~~p~~~R~g~~ve~~~~~qWFi~~~~~~~~~~~~~~~~~i~ 379 (861)
T TIGR00422 314 FEARKKIVEDLKEEGLLVKIEPH--------------THNVGTCWRSGTVVEPLLSKQWFVKVEKLADKALEAAEEGEIK 379 (861)
T ss_pred HHhHHHHHHHHHhCCCeeeeeee--------------eccCCEeCCCCCEEEEEecCcceEecHHHHHHHHHHhhcCCeE
Confidence 45567788899999998865433 223467888899999999999999999999999999973 45
Q ss_pred -CchHHHHHHHhhhc
Q 002217 273 -WPESVKEMQRNWIG 286 (952)
Q Consensus 273 -~p~~~~~~~~~~i~ 286 (952)
+|+..++...+||.
T Consensus 380 ~~P~~~~~~~~~wl~ 394 (861)
T TIGR00422 380 FVPKRMEKRYLNWLR 394 (861)
T ss_pred EEChHHHHHHHHHHh
Confidence 59999999999984
No 114
>cd00395 Tyr_Trp_RS_core catalytic core domain of tyrosinyl-tRNA and tryptophanyl-tRNA synthetase. Tyrosinyl-tRNA synthetase (TyrRS)/Tryptophanyl-tRNA synthetase (TrpRS) catalytic core domain. These enzymes attach Tyr or Trp, respectively, to the appropriate tRNA. These class I enzymes are homodimers, which aminoacylate the 2'-OH of the nucleotide at the 3' of the appropriate tRNA. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. It contains the class I characteristic HIGH and KMSKS motifs, which are involved in ATP binding.
Probab=93.47 E-value=0.077 Score=58.30 Aligned_cols=68 Identities=25% Similarity=0.456 Sum_probs=40.6
Q ss_pred CCC-CCCCCchhHHHHHHHHHHHHHHHcCCcccccccccccCh---HHHHHHHHhCCCchHHHHHHHHHHHHHHHHcCC
Q 002217 105 PSG-AGLHVGHPLGYTATDILARLKRMQGYNVLHPMGWDAFGL---PAEQYAIETGTHPKITTLRNINRFRTQLKSLGF 179 (952)
Q Consensus 105 png-~~lHiGH~~~~~~~Di~~Ry~r~~G~~V~~~~G~D~~Gl---pie~~a~~~g~~~~~~~~~~~~~~~~~l~~lgi 179 (952)
|+| . ||+||..+ -..+.++++ .|+++.+..| |.|++ |. -+..++-....+...+++..+..++.++|+
T Consensus 8 PTg~~-lHlGh~~~---l~~~~~lq~-~g~~~~~~I~-d~~a~~~d~s-g~~~~r~~~~~~~i~~n~~~~~~~~~a~g~ 79 (273)
T cd00395 8 PTADS-LHIGHLIG---LLTFRRFQH-AGHRPIFLIG-GQTGIIGDPS-GKKSERTLNDPEEVRQNIRRIAAQYLAVGI 79 (273)
T ss_pred CCCCC-ccHHHHHH---HHHHHHHHH-CCCCEEEEEe-cCceeeCCCC-CccccccCCCHHHHHHHHHHHHHHHHHhcC
Confidence 677 5 99999877 233555554 6888877665 22222 21 000011111345667778888889998887
No 115
>PRK14900 valS valyl-tRNA synthetase; Provisional
Probab=93.45 E-value=0.094 Score=68.05 Aligned_cols=79 Identities=16% Similarity=0.238 Sum_probs=63.9
Q ss_pred HHHHHHHHHHHHHHCCceeeeccccccCCCCCcccCchhhccCccccCCCCeEEeeccccchhhhhhhhHhhccCCC--C
Q 002217 194 YYKWTQWIFLQLLKRGLAYQAEVPVNWCPALGTVLANEEVVDGVSERGGHPVIRKPMRQWMLKITEYADRLLDDLDD--L 271 (952)
Q Consensus 194 ~~~~v~~~f~~L~~kGliy~~~~~v~wc~~~~t~ls~~Ev~~~~~~~~~~~~~~~~~~~~~~~i~~y~~~l~~~l~~--~ 271 (952)
..+.-..++..|.++|++...+.. +...++|++|+.+++.+...||||+++.+++.+++.+++ .
T Consensus 330 ~~ear~~Ii~~L~~~g~l~~~~~~--------------~h~~~~c~R~~~~ie~~~s~qWFi~l~~~k~~~~~~v~~~~~ 395 (1052)
T PRK14900 330 RFEARKEVKRLLAEQGLDRGAKPH--------------VLPLGRCQRSATILEPLLSDQWYVRIEPLARPAIEAVEQGRT 395 (1052)
T ss_pred HHHHHHHHHHHHHhCCCeecceee--------------eccCceeCCCCceEEEEeccceeeehHHHHHHHHHHHhcCCc
Confidence 345566788899999999775322 122467888999999999999999999999999999975 4
Q ss_pred C-CchHHHHHHHhhhc
Q 002217 272 D-WPESVKEMQRNWIG 286 (952)
Q Consensus 272 ~-~p~~~~~~~~~~i~ 286 (952)
. +|+..++...+||.
T Consensus 396 ~~~P~~~~~~~~~wl~ 411 (1052)
T PRK14900 396 RFIPEQWTNTYMAWMR 411 (1052)
T ss_pred EEEChHHHHHHHHHHh
Confidence 4 79999998899984
No 116
>PRK13208 valS valyl-tRNA synthetase; Reviewed
Probab=93.43 E-value=0.11 Score=65.93 Aligned_cols=78 Identities=24% Similarity=0.376 Sum_probs=63.0
Q ss_pred HHHHHHHHHHHHHCCceeeeccccccCCCCCcccCchhhccCccccCCCCeEEeeccccchhhhhhhhHhhccCCCCC-C
Q 002217 195 YKWTQWIFLQLLKRGLAYQAEVPVNWCPALGTVLANEEVVDGVSERGGHPVIRKPMRQWMLKITEYADRLLDDLDDLD-W 273 (952)
Q Consensus 195 ~~~v~~~f~~L~~kGliy~~~~~v~wc~~~~t~ls~~Ev~~~~~~~~~~~~~~~~~~~~~~~i~~y~~~l~~~l~~~~-~ 273 (952)
.+.-..+...|.++|++.......+ ..++|++||.+++.+...||||+++++++++++.+++.+ +
T Consensus 314 ~~a~~~i~~~L~~~g~~~~~~~~~~--------------~~p~~~r~~~~v~~~~~~qwfl~~~~~~~~~~~~~~~~~~~ 379 (800)
T PRK13208 314 EEARKKIVEDLKSGGLLGKQEPIKH--------------NVKFCERCDTPLEILVTRQWFIKVLDLKEELLERGKEINWY 379 (800)
T ss_pred HHHHHHHHHHHHhCCCeeceeeeec--------------cCCccCCCCCEEEEeccceeeEeCHHHHHHHHHhhcCcEEE
Confidence 4556778889999999865432211 125577888999999999999999999999999999887 5
Q ss_pred chHHHHHHHhhhc
Q 002217 274 PESVKEMQRNWIG 286 (952)
Q Consensus 274 p~~~~~~~~~~i~ 286 (952)
|+..++...+||.
T Consensus 380 P~~~~~~~~~~l~ 392 (800)
T PRK13208 380 PEHMRVRLENWIE 392 (800)
T ss_pred CHHHHHHHHHHHH
Confidence 9999999999984
No 117
>KOG1148 consensus Glutaminyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=92.85 E-value=0.28 Score=57.27 Aligned_cols=94 Identities=24% Similarity=0.373 Sum_probs=60.0
Q ss_pred EEEcCCCCCCCCCCCCchhHHHHHHHHHHHHHHHcCCcccccccccccChHHHHHHHHhCCCchHHHHHHHHHHHHHHHH
Q 002217 97 YVLDMFPYPSGAGLHVGHPLGYTATDILARLKRMQGYNVLHPMGWDAFGLPAEQYAIETGTHPKITTLRNINRFRTQLKS 176 (952)
Q Consensus 97 ~i~~~~Pypng~~lHiGH~~~~~~~Di~~Ry~r~~G~~V~~~~G~D~~Glpie~~a~~~g~~~~~~~~~~~~~~~~~l~~ 176 (952)
+++--||=|||- |||||+-..-+-==+|+ .+.|.--+ -+|+ ..|+.-..++.+.+++...-
T Consensus 249 V~TRFPPEPNG~-LHIGHaKAInvNFgyAk--~~~G~cyL---RfDD-------------TNPEkEee~yf~sI~e~V~W 309 (764)
T KOG1148|consen 249 VVTRFPPEPNGI-LHIGHAKAINVNFGYAK--AHGGVCYL---RFDD-------------TNPEKEEEEYFESIKEMVAW 309 (764)
T ss_pred eEEeCCCCCCce-eeecchhheeechhhhh--hhCCeEEE---ecCC-------------CCcchhhHHHHHHHHHHHHH
Confidence 455669999998 99999965211100111 11111110 0111 34666667788888888888
Q ss_pred cCCccccCCcccCCChhHHHHHHHHHHHHHHCCceee
Q 002217 177 LGFSYDWNREISTIEPAYYKWTQWIFLQLLKRGLAYQ 213 (952)
Q Consensus 177 lgi~~Dw~~~~~T~~~~~~~~v~~~f~~L~~kGliy~ 213 (952)
||. +.+-.|.+.+|-...-.+-.+|.++|++|-
T Consensus 310 LG~----~P~kvTysSDyFdqLy~~av~LIrkG~AYV 342 (764)
T KOG1148|consen 310 LGF----EPYKVTYSSDYFDQLYELAVELIRKGKAYV 342 (764)
T ss_pred hCC----CceeeecchhHHHHHHHHHHHHHhcCceeE
Confidence 886 356788887877777777778999999985
No 118
>PRK05743 ileS isoleucyl-tRNA synthetase; Reviewed
Probab=92.75 E-value=0.14 Score=65.72 Aligned_cols=79 Identities=19% Similarity=0.333 Sum_probs=64.8
Q ss_pred HHHHHHHHHHHHHHCCceeeeccccccCCCCCcccCchhhccCccccCCCCeEEeeccccchhhhh--hhhHhhccCCCC
Q 002217 194 YYKWTQWIFLQLLKRGLAYQAEVPVNWCPALGTVLANEEVVDGVSERGGHPVIRKPMRQWMLKITE--YADRLLDDLDDL 271 (952)
Q Consensus 194 ~~~~v~~~f~~L~~kGliy~~~~~v~wc~~~~t~ls~~Ev~~~~~~~~~~~~~~~~~~~~~~~i~~--y~~~l~~~l~~~ 271 (952)
..+.-..+...|.++|++.......+ .+++||||+.|++.+...|||+++++ +++.+++.+++.
T Consensus 368 v~ea~~~Ii~~L~~~g~l~~~~~~~h--------------~yp~~wR~~~pvi~r~~~QWFi~~~~~~~k~~~l~~~~~v 433 (912)
T PRK05743 368 VFKANPKIIEKLEEKGALLKEEKITH--------------SYPHCWRTKKPVIFRATPQWFISMDKKGLREQALKAIEKV 433 (912)
T ss_pred HHHhHHHHHHHHHhCCCeeeeeeeec--------------cCCeecCCCCEEEEEecCcccEeCChHHHHHHHHHHHccc
Confidence 34556778888999999866543321 24678999999999999999999998 999999999988
Q ss_pred CC-chHHHHHHHhhhc
Q 002217 272 DW-PESVKEMQRNWIG 286 (952)
Q Consensus 272 ~~-p~~~~~~~~~~i~ 286 (952)
+| |+..++...+||.
T Consensus 434 ~~~P~~~~~r~~~~i~ 449 (912)
T PRK05743 434 KWIPAWGKNRIESMVE 449 (912)
T ss_pred EEEChHHHHHHHHHHh
Confidence 86 9999998889973
No 119
>cd00805 TyrRS_core catalytic core domain of tyrosinyl-tRNA synthetase. Tyrosinyl-tRNA synthetase (TyrRS) catalytic core domain. TyrRS is a homodimer which attaches Tyr to the appropriate tRNA. TyrRS is a class I tRNA synthetases, so it aminoacylates the 2'-OH of the nucleotide at the 3' end of the tRNA. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formationof the enzyme bound aminoacyl-adenylate. It contains the class I characteristic HIGH and KMSKS motifs, which are involved in ATP binding.
Probab=92.60 E-value=0.13 Score=56.30 Aligned_cols=71 Identities=21% Similarity=0.226 Sum_probs=42.9
Q ss_pred CCCC-CCCCCchhHHHHHHHHHHHHHHHcCCccccccccccc--ChHHHHHHHHhCCCchHHHHHHHHHHHHHHHHcCCc
Q 002217 104 YPSG-AGLHVGHPLGYTATDILARLKRMQGYNVLHPMGWDAF--GLPAEQYAIETGTHPKITTLRNINRFRTQLKSLGFS 180 (952)
Q Consensus 104 ypng-~~lHiGH~~~~~~~Di~~Ry~r~~G~~V~~~~G~D~~--Glpie~~a~~~g~~~~~~~~~~~~~~~~~l~~lgi~ 180 (952)
-|+| . +|+||..+. -.+.|++++ |++|.+..|=.+. |.|.-...+..+.+ .+...++...+..++.++|..
T Consensus 8 ~PTg~~-lHLG~~~~~---~~~~~lq~~-g~~~~ilI~D~~a~~~~~~~~~~~r~~~~-~~~i~~~~~~~~~~~~a~g~~ 81 (269)
T cd00805 8 DPTAPS-LHLGHLVPL---MKLRDFQQA-GHEVIVLIGDATAMIGDPSGKSEERKLLD-LELIRENAKYYKKQLKAILDF 81 (269)
T ss_pred CCCCCc-ccHHHHHHH---HHHHHHHHC-CCeEEEEECCCeeecCCCCCccccccCCC-HHHHHHHHHHHHHHHHHHHcc
Confidence 3677 5 999997752 367777775 8888766653322 11321111111223 345667778888899999874
No 120
>PRK05729 valS valyl-tRNA synthetase; Reviewed
Probab=92.47 E-value=0.16 Score=64.90 Aligned_cols=77 Identities=22% Similarity=0.332 Sum_probs=62.4
Q ss_pred HHHHHHHHHHHHCCceeeeccccccCCCCCcccCchhhccCccccCCCCeEEeeccccchhhhhhhhHhhccCCC--CC-
Q 002217 196 KWTQWIFLQLLKRGLAYQAEVPVNWCPALGTVLANEEVVDGVSERGGHPVIRKPMRQWMLKITEYADRLLDDLDD--LD- 272 (952)
Q Consensus 196 ~~v~~~f~~L~~kGliy~~~~~v~wc~~~~t~ls~~Ev~~~~~~~~~~~~~~~~~~~~~~~i~~y~~~l~~~l~~--~~- 272 (952)
+.-..+...|.++|++...+.. +...|+|+|||.+++.+..+||||+++.+++.+++.+++ ..
T Consensus 317 ~ar~~i~~~L~~~g~l~~~~~~--------------~~~~p~~~R~~~~i~~~~~~QWFi~~~~~~~~~~~~v~~~~i~~ 382 (874)
T PRK05729 317 EARKAIVADLEELGLLVKIEPH--------------THSVGHSDRSGVVIEPYLSDQWFVKMKPLAKPALEAVENGEIKF 382 (874)
T ss_pred HHHHHHHHHHHhCCCeeeeEEe--------------eccCCeeCCCCceEEEEecCcceEehHHHHHHHHHHHhcCCcEE
Confidence 4556788899999998665332 223467888889999999999999999999999999864 34
Q ss_pred CchHHHHHHHhhhc
Q 002217 273 WPESVKEMQRNWIG 286 (952)
Q Consensus 273 ~p~~~~~~~~~~i~ 286 (952)
+|+..++...+|+.
T Consensus 383 ~P~~~~~~~~~wl~ 396 (874)
T PRK05729 383 VPERWEKTYFHWME 396 (874)
T ss_pred EChHHHHHHHHHHh
Confidence 79999999999984
No 121
>PRK12556 tryptophanyl-tRNA synthetase; Provisional
Probab=91.24 E-value=0.31 Score=55.02 Aligned_cols=66 Identities=18% Similarity=0.235 Sum_probs=34.2
Q ss_pred CCCCCCCCchhHHHHHHHHHHHHHHHcCCcccccccccccChHHHHHHHHhCCCchHHHHHHHHHHHHHHHHcCCccc
Q 002217 105 PSGAGLHVGHPLGYTATDILARLKRMQGYNVLHPMGWDAFGLPAEQYAIETGTHPKITTLRNINRFRTQLKSLGFSYD 182 (952)
Q Consensus 105 png~~lHiGH~~~~~~~Di~~Ry~r~~G~~V~~~~G~D~~Glpie~~a~~~g~~~~~~~~~~~~~~~~~l~~lgi~~D 182 (952)
|+|. +||||..+.+-. ..+.+...|.++.+... |-|-+ + ..+ ++.+ ..+++..+...+.++|+..+
T Consensus 12 PTG~-~HLGnylga~k~--~~~lq~~~~~~~~~~IA-DlHal-t-----~~~-~~~~-l~~~~~~~~~~~lA~GlDP~ 77 (332)
T PRK12556 12 PTGY-PHLGNYIGAIKP--ALQMAKNYEGKALYFIA-DYHAL-N-----AVH-DPEQ-FRSYTREVAATWLSLGLDPE 77 (332)
T ss_pred CCCc-chHHHHHHHHHH--HHHHHHhcCCeEEEEEe-chhhc-c-----CCC-CHHH-HHHHHHHHHHHHhheeeccc
Confidence 6686 899987764322 23334444554543332 33333 1 011 3333 44555666777778888544
No 122
>PRK13804 ileS isoleucyl-tRNA synthetase; Provisional
Probab=90.59 E-value=0.28 Score=63.23 Aligned_cols=78 Identities=22% Similarity=0.276 Sum_probs=64.1
Q ss_pred HHHHHHHHHHHHHCCceeeeccccccCCCCCcccCchhhccCccccCCCCeEEeeccccchhhhh-------hhhHhhcc
Q 002217 195 YKWTQWIFLQLLKRGLAYQAEVPVNWCPALGTVLANEEVVDGVSERGGHPVIRKPMRQWMLKITE-------YADRLLDD 267 (952)
Q Consensus 195 ~~~v~~~f~~L~~kGliy~~~~~v~wc~~~~t~ls~~Ev~~~~~~~~~~~~~~~~~~~~~~~i~~-------y~~~l~~~ 267 (952)
.+.-..+...|.++|++....... -.+++||||+.|++.+...|||+++.. .++.+++.
T Consensus 400 ~ea~~~Ii~~L~~~g~l~~~~~~~--------------h~yp~~wR~~~pii~r~t~QWFi~~~~~~~~~~~~k~~al~~ 465 (961)
T PRK13804 400 GDANKAVIEKLIEAGLLLARGRLK--------------HSYPHSWRSKKPVIFRNTPQWFISMDKDLGDGTTLRSRALDA 465 (961)
T ss_pred hhhhHHHHHHHHhCCCccccccee--------------cCCCccCCCCCeEEEeccccccEEcCCcccchHHHHHHHHHH
Confidence 355667788899999987654432 124678999999999999999999998 99999999
Q ss_pred CCCCCC-chHHHHHHHhhhc
Q 002217 268 LDDLDW-PESVKEMQRNWIG 286 (952)
Q Consensus 268 l~~~~~-p~~~~~~~~~~i~ 286 (952)
+++..| |+..++...+||.
T Consensus 466 i~~v~~~P~~~~~r~~~~i~ 485 (961)
T PRK13804 466 IDKTRFVPAAGQNRLYNMIE 485 (961)
T ss_pred HhccEEECHHHHHHHHHHHh
Confidence 998887 9999999999984
No 123
>PLN02843 isoleucyl-tRNA synthetase
Probab=90.48 E-value=0.33 Score=62.64 Aligned_cols=76 Identities=18% Similarity=0.267 Sum_probs=62.3
Q ss_pred HHHHHHHHHHHCCceeeeccccccCCCCCcccCchhhccCccccCCCCeEEeeccccchhhhhhhhHhhccCCCCCC-ch
Q 002217 197 WTQWIFLQLLKRGLAYQAEVPVNWCPALGTVLANEEVVDGVSERGGHPVIRKPMRQWMLKITEYADRLLDDLDDLDW-PE 275 (952)
Q Consensus 197 ~v~~~f~~L~~kGliy~~~~~v~wc~~~~t~ls~~Ev~~~~~~~~~~~~~~~~~~~~~~~i~~y~~~l~~~l~~~~~-p~ 275 (952)
.-..+...|.++|++...+... -.+++||||+.|++.|...|||+++..+++++++.+++..| |+
T Consensus 388 a~~~Ii~~L~~~g~l~~~e~~~--------------H~yp~cwR~~~pvi~r~t~QWFi~~~~~k~~al~~~~~v~~~P~ 453 (974)
T PLN02843 388 GNAAVVEALDEAGSLLMEEAYG--------------HKYPYDWRTKKPTIFRATEQWFASVEGFRQAALDAIDKVKWIPA 453 (974)
T ss_pred chHHHHHHHHHCCCeeeeeeec--------------CCCCccCCCCCeEEEEecCceeEeCHHHHHHHHHHHhccEEECh
Confidence 4466788899999866543321 12578899999999999999999999999999999999886 99
Q ss_pred HHHHHHHhhhc
Q 002217 276 SVKEMQRNWIG 286 (952)
Q Consensus 276 ~~~~~~~~~i~ 286 (952)
..++...+||.
T Consensus 454 ~~~~r~~~~i~ 464 (974)
T PLN02843 454 QGENRIRAMVS 464 (974)
T ss_pred HHHHHHHHHHh
Confidence 88888899984
No 124
>PTZ00419 valyl-tRNA synthetase-like protein; Provisional
Probab=90.47 E-value=0.32 Score=63.14 Aligned_cols=78 Identities=19% Similarity=0.291 Sum_probs=62.7
Q ss_pred HHHHHHHHHHHHHCCceeeeccccccCCCCCcccCchhhccCccccCCCCeEEeeccccchhhhhhhhHhhccCCC--CC
Q 002217 195 YKWTQWIFLQLLKRGLAYQAEVPVNWCPALGTVLANEEVVDGVSERGGHPVIRKPMRQWMLKITEYADRLLDDLDD--LD 272 (952)
Q Consensus 195 ~~~v~~~f~~L~~kGliy~~~~~v~wc~~~~t~ls~~Ev~~~~~~~~~~~~~~~~~~~~~~~i~~y~~~l~~~l~~--~~ 272 (952)
.+.-..+...|.++|++.+.... +-..++|+|||.+++.+...|||++++.+++.+++.+++ ..
T Consensus 360 ~~ar~~ii~~L~~~g~l~~~~~~--------------~~~~p~~~R~~~~ie~~~~~QWFi~~~~~~~~al~~v~~~~i~ 425 (995)
T PTZ00419 360 FDCRRKIEEELKEMGLLRDKVPN--------------PMRLPRCSRSGDIVEPMLIPQWYVNCKDMAKRAVEAVRNGELK 425 (995)
T ss_pred HHHHHHHHHHHHhcCCEEeeEEe--------------ecCCCEeCCCCCEEEEEecCeeeEecHHHHHHHHHHhhcCCeE
Confidence 34556788889999998765332 122467889999999999999999999999999999973 34
Q ss_pred C-chHHHHHHHhhhc
Q 002217 273 W-PESVKEMQRNWIG 286 (952)
Q Consensus 273 ~-p~~~~~~~~~~i~ 286 (952)
| |+..++...+||.
T Consensus 426 ~~P~~~~~~~~~wl~ 440 (995)
T PTZ00419 426 IIPSSHENVWYHWLE 440 (995)
T ss_pred EEChHHHHHHHHHHh
Confidence 4 9999999999984
No 125
>cd00802 class_I_aaRS_core catalytic core domain of class I amino acyl-tRNA synthetase. Class I amino acyl-tRNA synthetase (aaRS) catalytic core domain. These enzymes are mostly monomers which aminoacylate the 2'-OH of the nucleotide at the 3' of the appropriate tRNA. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. It contains the characteristic class I HIGH and KMSKS motifs, which are involved in ATP binding.
Probab=90.01 E-value=0.2 Score=49.29 Aligned_cols=12 Identities=25% Similarity=0.587 Sum_probs=10.8
Q ss_pred ceeEecCchhhH
Q 002217 603 VDVYVGGAEHAV 614 (952)
Q Consensus 603 vDlyv~G~D~~~ 614 (952)
.|++++|.||..
T Consensus 94 ~~i~~~G~Dq~~ 105 (143)
T cd00802 94 CDIHLGGSDQLG 105 (143)
T ss_pred cEEEEechhHHH
Confidence 699999999965
No 126
>PLN02943 aminoacyl-tRNA ligase
Probab=89.58 E-value=0.49 Score=61.03 Aligned_cols=77 Identities=22% Similarity=0.444 Sum_probs=61.3
Q ss_pred HHHHHHHHHHHHCCceeeeccccccCCCCCcccCchhhccCccccCCCCeEEeeccccchhhhhhhhHhhccCCC--CC-
Q 002217 196 KWTQWIFLQLLKRGLAYQAEVPVNWCPALGTVLANEEVVDGVSERGGHPVIRKPMRQWMLKITEYADRLLDDLDD--LD- 272 (952)
Q Consensus 196 ~~v~~~f~~L~~kGliy~~~~~v~wc~~~~t~ls~~Ev~~~~~~~~~~~~~~~~~~~~~~~i~~y~~~l~~~l~~--~~- 272 (952)
+.-..+...|.++|++...+.. +...++|++|+.+++.+...|||++++.+++.+++.+++ ..
T Consensus 367 ear~~iv~~L~~~g~l~~~e~~--------------~~~~p~c~R~~~~Ie~~~~~QWFi~~~~l~~~~l~~v~~~~i~~ 432 (958)
T PLN02943 367 EAREKLWSDLEETGLAVKKEPH--------------TLRVPRSQRGGEVIEPLVSKQWFVTMEPLAEKALKAVENGELTI 432 (958)
T ss_pred HHHHHHHHHHHHCCCeeeeeee--------------ecCCCeeCCCCcEeEEEeccceeEEHHHHHHHHHHHHhcCCcEE
Confidence 4445677789999998755322 223577889999999999999999999999999999864 34
Q ss_pred CchHHHHHHHhhhc
Q 002217 273 WPESVKEMQRNWIG 286 (952)
Q Consensus 273 ~p~~~~~~~~~~i~ 286 (952)
+|+..++...+|+.
T Consensus 433 ~P~~~~~~~~~wl~ 446 (958)
T PLN02943 433 IPERFEKIYNHWLS 446 (958)
T ss_pred EChHHHHHHHHHHh
Confidence 69999999999983
No 127
>PRK13354 tyrosyl-tRNA synthetase; Provisional
Probab=89.39 E-value=0.23 Score=57.72 Aligned_cols=79 Identities=20% Similarity=0.232 Sum_probs=43.2
Q ss_pred CcEEEEcCCCCCCCCCCCCchhHHHHHHHHHHHHHHHcCCcccccccccc--cChHHHHHHHHhCCCchHHHHHHHHHHH
Q 002217 94 PKFYVLDMFPYPSGAGLHVGHPLGYTATDILARLKRMQGYNVLHPMGWDA--FGLPAEQYAIETGTHPKITTLRNINRFR 171 (952)
Q Consensus 94 ~kf~i~~~~Pypng~~lHiGH~~~~~~~Di~~Ry~r~~G~~V~~~~G~D~--~Glpie~~a~~~g~~~~~~~~~~~~~~~ 171 (952)
+++.+..|+ -|+|+.||+||+... -.+.++ ...|+++.++.|=.+ .|.|.-.. .++..-..+.+.+|+..++
T Consensus 32 ~~~~iy~G~-dPT~~sLHlGhlv~l---~~l~~l-q~~G~~~~~ligd~ta~igDpsgk~-~~R~~l~~e~i~~n~~~i~ 105 (410)
T PRK13354 32 KPLTLYLGF-DPTAPSLHIGHLVPL---MKLKRF-QDAGHRPVILIGGFTGKIGDPSGKS-KERKLLTDEQVQHNAKTYT 105 (410)
T ss_pred CCcEEEEcc-cCCCCCcchhhHHHH---HHHHHH-HHcCCeEEEEEcccccccCCCCccc-ccccCCCHHHHHHHHHHHH
Confidence 345566665 355523999995542 224444 457898887776444 33342111 1111112344567777888
Q ss_pred HHHHHcCC
Q 002217 172 TQLKSLGF 179 (952)
Q Consensus 172 ~~l~~lgi 179 (952)
.|+.+ |+
T Consensus 106 ~q~~~-~l 112 (410)
T PRK13354 106 EQIFK-LF 112 (410)
T ss_pred HHHHH-hc
Confidence 87766 55
No 128
>PF00133 tRNA-synt_1: tRNA synthetases class I (I, L, M and V); InterPro: IPR002300 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. The class Ia aminoacyl-tRNA synthetases consist of the isoleucyl, methionyl, valyl, leucyl, cysteinyl, and arginyl-tRNA synthetases; the class Ib include the glutamyl and glutaminyl-tRNA synthetases, and the class Ic are the tyrosyl and tryptophanyl-tRNA synthetases [].; GO: 0000166 nucleotide binding, 0004812 aminoacyl-tRNA ligase activity, 0005524 ATP binding, 0006418 tRNA aminoacylation for protein translation, 0005737 cytoplasm; PDB: 1OBC_A 2AJH_B 4ARI_A 2AJG_B 4AQ7_D 2AJI_B 4ARC_A 4AS1_A 1QU3_A 1QU2_A ....
Probab=89.30 E-value=0.23 Score=60.81 Aligned_cols=79 Identities=27% Similarity=0.505 Sum_probs=63.7
Q ss_pred HHHHHHHHHHHHHHCCceeeeccccccCCCCCcccCchhhccCccccCCCCeEEeeccccchhhhhhhhHhhccCCCCCC
Q 002217 194 YYKWTQWIFLQLLKRGLAYQAEVPVNWCPALGTVLANEEVVDGVSERGGHPVIRKPMRQWMLKITEYADRLLDDLDDLDW 273 (952)
Q Consensus 194 ~~~~v~~~f~~L~~kGliy~~~~~v~wc~~~~t~ls~~Ev~~~~~~~~~~~~~~~~~~~~~~~i~~y~~~l~~~l~~~~~ 273 (952)
..++-..+...|.++|++...... +-..++|++|+.+++.+...|||+++++.++++++.+++.+|
T Consensus 333 v~~ar~~ii~~L~~~g~l~~~~~~--------------~~~~p~c~R~~~~ii~~~~~QWFi~~~~~k~~~l~~~~~i~~ 398 (601)
T PF00133_consen 333 VFEAREKIIEDLKEKGLLLKIEEI--------------EHSYPHCWRSGTPIIPRLTDQWFIKYDDWKKKALEALEKIKF 398 (601)
T ss_dssp HHHHHHHHHHHHHHTTSEEEEEEE--------------EEEEEEETTTSCBEEEEEEEEEEEEHHHHHHHHHHHHHTSEE
T ss_pred eeeccHHHHHHHHHhhhhcccccc--------------ccccceecCCCCEEEecccceeEEecHHhHHHHHhhcccceE
Confidence 345677788899999998764322 112346788888999999999999999999999999998885
Q ss_pred -chHHHHHHHhhhc
Q 002217 274 -PESVKEMQRNWIG 286 (952)
Q Consensus 274 -p~~~~~~~~~~i~ 286 (952)
|+..++.-.+||.
T Consensus 399 ~P~~~~~~~~~~i~ 412 (601)
T PF00133_consen 399 YPESYRKRFENWID 412 (601)
T ss_dssp SSSTCHHHHHHHHH
T ss_pred Ecccchhhhhhhcc
Confidence 9988888888884
No 129
>PF00579 tRNA-synt_1b: tRNA synthetases class I (W and Y); InterPro: IPR002305 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. The class Ia aminoacyl-tRNA synthetases consist of the isoleucyl, methionyl, valyl, leucyl, cysteinyl, and arginyl-tRNA synthetases; the class Ib include the glutamyl and glutaminyl-tRNA synthetases, and the class Ic are the tyrosyl and tryptophanyl-tRNA synthetases [].; GO: 0000166 nucleotide binding, 0004812 aminoacyl-tRNA ligase activity, 0005524 ATP binding, 0006418 tRNA aminoacylation for protein translation, 0005737 cytoplasm; PDB: 2JAN_A 3P0J_B 3P0I_B 3P0H_B 1YID_C 2A4M_C 1YIA_C 1YI8_C 2EL7_A 3PRH_A ....
Probab=88.76 E-value=0.34 Score=53.85 Aligned_cols=77 Identities=19% Similarity=0.237 Sum_probs=40.0
Q ss_pred CcEEEEcCCCCCCCCCCCCchhHHHHHHHHHHHHHHHcCCcccccccccccChHHHHHHHHhCCCchHHHHHHHHHHHHH
Q 002217 94 PKFYVLDMFPYPSGAGLHVGHPLGYTATDILARLKRMQGYNVLHPMGWDAFGLPAEQYAIETGTHPKITTLRNINRFRTQ 173 (952)
Q Consensus 94 ~kf~i~~~~Pypng~~lHiGH~~~~~~~Di~~Ry~r~~G~~V~~~~G~D~~Glpie~~a~~~g~~~~~~~~~~~~~~~~~ 173 (952)
+++.++.|+ -|+|. +||||+... ..+.++++ .|++|.+..|=+ |++-. ... ....+........+...
T Consensus 4 ~~~~~y~G~-~PTg~-lHlG~l~~~---~~~~~lq~-~g~~~~i~iaD~-~a~~~----~~~-~~~~~~~~~~~~~~~~~ 71 (292)
T PF00579_consen 4 KPFRVYTGI-DPTGD-LHLGHLVPI---MKLIWLQK-AGFKVIILIADL-HALLG----DPS-KGDERKIRSRAEYNIND 71 (292)
T ss_dssp SSEEEEEEE-ESSSS--BHHHHHHH---HHHHHHHH-TTSEEEEEEEHH-HHHHT----TTT-GSSHHHHHHHHHHHHHH
T ss_pred CCcEEEEeE-CCCCc-ccchHHHHH---HHHHHHHh-cCCccceEecch-hhccc----Ccc-cccHHHHHHHHHHHHHH
Confidence 345555554 37887 999977663 23444555 888888777632 22210 011 11233333444444444
Q ss_pred --HHHcCCccc
Q 002217 174 --LKSLGFSYD 182 (952)
Q Consensus 174 --l~~lgi~~D 182 (952)
+.++|+..+
T Consensus 72 ~~~la~g~d~~ 82 (292)
T PF00579_consen 72 KAILALGLDPE 82 (292)
T ss_dssp HHHHHTTSHTT
T ss_pred HHHHHhccCcc
Confidence 668887444
No 130
>PRK05912 tyrosyl-tRNA synthetase; Validated
Probab=88.48 E-value=0.28 Score=57.01 Aligned_cols=78 Identities=19% Similarity=0.230 Sum_probs=42.1
Q ss_pred cEEEEcCCCCCCCCCCCCchhHHHHHHHHHHHHHHHcCCcccccccc-ccc-ChHHHHHHHHhCCCchHHHHHHHHHHHH
Q 002217 95 KFYVLDMFPYPSGAGLHVGHPLGYTATDILARLKRMQGYNVLHPMGW-DAF-GLPAEQYAIETGTHPKITTLRNINRFRT 172 (952)
Q Consensus 95 kf~i~~~~Pypng~~lHiGH~~~~~~~Di~~Ry~r~~G~~V~~~~G~-D~~-Glpie~~a~~~g~~~~~~~~~~~~~~~~ 172 (952)
++.++.|+ -|+|+.||+||+.. -..+.++++ .|+++.+..|= ... |.|.- +..++..-..+.+..+.+.+++
T Consensus 33 ~~~vy~G~-dPTg~slHlGhlv~---l~~l~~lQ~-~G~~~~~ligd~ta~igDpsg-k~~~r~~l~~e~i~~n~~~i~~ 106 (408)
T PRK05912 33 PLRIYLGF-DPTAPSLHLGHLVP---LLKLRRFQD-AGHKPIALIGGFTGMIGDPSG-KSETRKLLTREQVAENAETIKE 106 (408)
T ss_pred CCEEEEee-cCCCCCccHHhHHH---HHHHHHHHH-CCCcEEEEEcCceeEcCCCCC-CchhhccCCHHHHHHHHHHHHH
Confidence 34555564 35662399999774 234555554 68888776652 111 22210 1111112234556677777877
Q ss_pred HHHHcCC
Q 002217 173 QLKSLGF 179 (952)
Q Consensus 173 ~l~~lgi 179 (952)
|+ +.|+
T Consensus 107 ql-~~~l 112 (408)
T PRK05912 107 QL-FKFL 112 (408)
T ss_pred HH-HHhc
Confidence 77 4555
No 131
>PLN02381 valyl-tRNA synthetase
Probab=88.48 E-value=0.55 Score=61.08 Aligned_cols=79 Identities=22% Similarity=0.340 Sum_probs=62.9
Q ss_pred HHHHHHHHHHHHHHCCceeeeccccccCCCCCcccCchhhccCccccCCCCeEEeeccccchhhhhhhhHhhccC-----
Q 002217 194 YYKWTQWIFLQLLKRGLAYQAEVPVNWCPALGTVLANEEVVDGVSERGGHPVIRKPMRQWMLKITEYADRLLDDL----- 268 (952)
Q Consensus 194 ~~~~v~~~f~~L~~kGliy~~~~~v~wc~~~~t~ls~~Ev~~~~~~~~~~~~~~~~~~~~~~~i~~y~~~l~~~l----- 268 (952)
..++-..+...|-++|++...... +...++|+||+.+++.+...|||++++.+++..++.+
T Consensus 426 ~~eAr~~Ii~~L~~~g~l~~~~~~--------------~h~~p~c~R~~~~ie~~~~~QWFi~~~~l~~~al~av~~~~~ 491 (1066)
T PLN02381 426 RFAAREAVIEALQKKGLYRGAKNN--------------EMRLGLCSRTNDVVEPMIKPQWFVNCSSMAKQALDAAIDGEN 491 (1066)
T ss_pred HHHHHHHHHHHHHhCCCEecceee--------------ecCCCeeCCCCceEEEeecccceEEchHHHHHHHHHHhhccC
Confidence 344566788899999999855332 1224778899999999999999999999999999987
Q ss_pred CCCCC-chHHHHHHHhhhc
Q 002217 269 DDLDW-PESVKEMQRNWIG 286 (952)
Q Consensus 269 ~~~~~-p~~~~~~~~~~i~ 286 (952)
+...| |+..+..-.+||.
T Consensus 492 ~~i~~~P~~~~~~~~~wl~ 510 (1066)
T PLN02381 492 KKLEFIPKQYLAEWKRWLE 510 (1066)
T ss_pred CceEEEChHHHHHHHHHHh
Confidence 45566 9999888899984
No 132
>TIGR00395 leuS_arch leucyl-tRNA synthetase, archaeal and cytosolic family. The leucyl-tRNA synthetases belong to two families so broadly different that they are represented by separate models. This model includes both archaeal and cytosolic eukaryotic leucyl-tRNA synthetases; the eubacterial and mitochondrial forms differ so substantially that some other tRNA ligases score higher by this model than does any eubacterial LeuS.
Probab=88.37 E-value=2.1 Score=55.40 Aligned_cols=161 Identities=20% Similarity=0.231 Sum_probs=94.4
Q ss_pred CCC-CCC--chhHH-H-HHHHHHHHHHHHc-------CCcccccccccccC-hHHHHHHHHhCCCchHHH---HHHH-HH
Q 002217 107 GAG-LHV--GHPLG-Y-TATDILARLKRMQ-------GYNVLHPMGWDAFG-LPAEQYAIETGTHPKITT---LRNI-NR 169 (952)
Q Consensus 107 g~~-lHi--GH~~~-~-~~~Di~~Ry~r~~-------G~~V~~~~G~D~~G-lpie~~a~~~g~~~~~~~---~~~~-~~ 169 (952)
|+| .|. +|.-. | ++.|.-.| +..- .....-++-.|..| +|+.....+.|+.-..-. .+.. ..
T Consensus 301 GTGvV~~~Pah~p~Dy~~~~~l~~~-~~~~gi~~~~~~~~~i~ii~~~~~g~~~a~~~~~~~~i~~~~d~~~l~~a~~~~ 379 (938)
T TIGR00395 301 GTGVVMSVPAHAPDDYIALEDLLHD-PEYLGIKPVVIDIEPVPLIHTDGYGDLPAKEIVEEKGIKSQKDKNLLEEATKIL 379 (938)
T ss_pred CcceEEeCCCCCHHHHHHHHHhhhc-chhcCCcchhcccCCccceecCCCCcccHHHHHHHhcCCCchhhhHHHHHHHHH
Confidence 444 566 67766 4 34554333 1111 23344555667777 777777777776432111 1111 11
Q ss_pred HHHHHHHcCCccccCCcccCCChhHHHHHHHHHHHHHHCCceeeeccccccCCCCCcccCchhhccCccccCCCCeEEe-
Q 002217 170 FRTQLKSLGFSYDWNREISTIEPAYYKWTQWIFLQLLKRGLAYQAEVPVNWCPALGTVLANEEVVDGVSERGGHPVIRK- 248 (952)
Q Consensus 170 ~~~~l~~lgi~~Dw~~~~~T~~~~~~~~v~~~f~~L~~kGliy~~~~~v~wc~~~~t~ls~~Ev~~~~~~~~~~~~~~~- 248 (952)
+++.|. -|+..+=--.|.= -.-.++-..+...|.++|++..-..+. ..+.|+|||.+++.+
T Consensus 380 y~~~f~-~G~m~~~~~~~~G--~~v~ear~~i~~~L~~~g~~~~~~~~~---------------~~~v~~R~g~~~vv~~ 441 (938)
T TIGR00395 380 YKEEYH-TGVMIYNIPPYKG--MKVSEAKEKVKADLIDAGLADVMYEFS---------------ESPVICRCGTDCIVKV 441 (938)
T ss_pred hhhhcc-CceeccCCcccCC--cCHHHhHHHHHHHHHHCCCceEeeecC---------------CCCcEecCCCeEEEec
Confidence 222221 1332110001111 123344556778899999987654331 123456888888876
Q ss_pred eccccchhhh--hhhhHhhccCCCCC-CchHHHHHHHhhhc
Q 002217 249 PMRQWMLKIT--EYADRLLDDLDDLD-WPESVKEMQRNWIG 286 (952)
Q Consensus 249 ~~~~~~~~i~--~y~~~l~~~l~~~~-~p~~~~~~~~~~i~ 286 (952)
...||||+++ .+++.+++.+++.. +|+..++...+||.
T Consensus 442 ~~~QWFi~~~~~~~k~~~~~~l~~~~~~P~~~~~~~~~~l~ 482 (938)
T TIGR00395 442 VEDQWFVKYSDESWKELAHECLEGMRIIPEEVKNAFEGKID 482 (938)
T ss_pred cCCCCeEEcCcHHHHHHHHHHHhcCEEeCHHHHHHHHHHHh
Confidence 8899999999 59999999999887 69999999889973
No 133
>KOG1195 consensus Arginyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=87.16 E-value=5.7 Score=46.28 Aligned_cols=141 Identities=19% Similarity=0.198 Sum_probs=85.3
Q ss_pred hhhHHHHHHHHHcCCCCCCCCCCCCCCcEEEEcCCCCCCCCCCCCchhHHHHHHHHHHHHHHHcCCcccccc--------
Q 002217 68 EIEPKWQSYWENNRTFRTPDEIDTSKPKFYVLDMFPYPSGAGLHVGHPLGYTATDILARLKRMQGYNVLHPM-------- 139 (952)
Q Consensus 68 ~iE~k~~~~W~~~~~f~~~~~~~~~k~kf~i~~~~Pypng~~lHiGH~~~~~~~Di~~Ry~r~~G~~V~~~~-------- 139 (952)
-++.-.+..|++...|.... .. ..++-+|=-.-|.-+-+ .|+||.|..+++-.++...+..|++|..+-
T Consensus 86 ~~k~~l~~i~~~~~~~g~~~-~~-~~k~iVVefSSPNIAK~-FHvGhLRsTiiG~flanl~e~~G~~Vtr~NYLGDWGkQ 162 (567)
T KOG1195|consen 86 LIKSVLPIIEEQREKYGKNE-LG-SGKKIVVEFSSPNIAKP-FHVGHLRSTIIGNFLANLHEALGWEVTRVNYLGDWGKQ 162 (567)
T ss_pred HHHHHHHHHHHHhcccCccc-cc-cCceEEEEecCCCcccc-cccchhhhhhhhhHhhhhHHhhCCceeehhhhhHHHHH
Confidence 36666778888888887551 22 23444443334444455 899999999999999999999999996554
Q ss_pred ------cccccCh-------HHHHH----HH-----HhCCCc----h------------------HHHHHHHHHHHHHHH
Q 002217 140 ------GWDAFGL-------PAEQY----AI-----ETGTHP----K------------------ITTLRNINRFRTQLK 175 (952)
Q Consensus 140 ------G~D~~Gl-------pie~~----a~-----~~g~~~----~------------------~~~~~~~~~~~~~l~ 175 (952)
||--.|. ||.+. ++ +...+. + .+.+-.|+...+..+
T Consensus 163 Fgll~~g~~~~g~e~~L~~~pI~hL~dvYVk~nk~~~~~~~~~~~are~f~rlE~~d~e~~k~Wqrfr~lsIe~l~~~Y~ 242 (567)
T KOG1195|consen 163 FGLLALGFQLYGDEEELQLNPIKHLFDVYVKINKDAEKDPDTAEEAREFFKRLEDGDEEHLKLWQRFRDLSIEKLIKTYN 242 (567)
T ss_pred hhHHhccHHhhCchhhhccchHHHHHHHHHHhhhhhhhCcchHHHHHHHHHHHhcccHHHHHHHHHhhhhhHHHHHHHHH
Confidence 3444443 33221 00 000000 0 011223455567788
Q ss_pred HcCCccccCCcccCCChhHHHHHHHHHHHHHHCCceeee
Q 002217 176 SLGFSYDWNREISTIEPAYYKWTQWIFLQLLKRGLAYQA 214 (952)
Q Consensus 176 ~lgi~~Dw~~~~~T~~~~~~~~v~~~f~~L~~kGliy~~ 214 (952)
|||+.|| .|.--+--+.+..+.+...+.++||+...
T Consensus 243 Rl~v~FD---~y~gESqv~~e~~~~~~d~~rs~~l~~e~ 278 (567)
T KOG1195|consen 243 RLNVKFD---EYSGESQVSNEKMQEALDLLRSANLTEEI 278 (567)
T ss_pred Hhceeee---eccchHHHHHHHHHHHHHHHHhcCCcccC
Confidence 9999998 22222335667777787778778765443
No 134
>cd00418 GlxRS_core catalytic core domain of glutamyl-tRNA and glutaminyl-tRNA synthetase. Glutamyl-tRNA synthetase(GluRS)/Glutaminyl-tRNA synthetase (GlnRS) cataytic core domain. These enzymes attach Glu or Gln, respectively, to the appropriate tRNA. Like other class I tRNA synthetases, they aminoacylate the 2'-OH of the nucleotide at the 3' end of the tRNA. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. It contains the characteristic class I HIGH and KMSKS motifs, which are involved in ATP binding. These enzymes function as monomers. Archaea, cellular organelles, and some bacteria lack GlnRS. In these cases, the "non-discriminating" form of GluRS aminoacylates both tRNA(Glu) and tRNA(Gln) with Glu, which is converted to Gln when appropriate by a transamidation enzyme. The discriminating form of GluRS differs from GlnRS and the non-discriminating form of GluRS in their C-terminal anti-codon bind
Probab=85.84 E-value=1.7 Score=46.40 Aligned_cols=34 Identities=26% Similarity=0.342 Sum_probs=27.0
Q ss_pred ccccccCCCCCCChhhHHhh-hCchhhhhhhhhcCC
Q 002217 707 AHKMSKSRGNVVNPDDVVTE-YGADSLRLYEMFMGP 741 (952)
Q Consensus 707 g~KMSKSkGNvV~P~eii~~-YGaDalRl~ll~~~~ 741 (952)
|+|||||+|+ ++..++.++ |-+++++-|++..+-
T Consensus 151 g~KLSKr~~~-~~i~~~r~~G~~p~ai~~~l~~lG~ 185 (230)
T cd00418 151 GTKLSKRKLN-TTLRALRRRGYLPEALRNYLALIGW 185 (230)
T ss_pred CCCccCcCCC-cCHHHHHHCCCcHHHHHHHHHHcCC
Confidence 7999999998 466665553 889999999887653
No 135
>PRK12285 tryptophanyl-tRNA synthetase; Reviewed
Probab=84.46 E-value=4.1 Score=46.74 Aligned_cols=76 Identities=30% Similarity=0.366 Sum_probs=47.5
Q ss_pred CCcEEEEcCCCCCCCCCCCCchhHHHHHHHHHHHHHHHcCCcccccccccccChHHHHHHHHhCCCchHHHHHHHHHHHH
Q 002217 93 KPKFYVLDMFPYPSGAGLHVGHPLGYTATDILARLKRMQGYNVLHPMGWDAFGLPAEQYAIETGTHPKITTLRNINRFRT 172 (952)
Q Consensus 93 k~kf~i~~~~Pypng~~lHiGH~~~~~~~Di~~Ry~r~~G~~V~~~~G~D~~Glpie~~a~~~g~~~~~~~~~~~~~~~~ 172 (952)
+++|+++.|.- |+|. +||||... -..+.+++. .|+++.+..+=+ |.+- . .+.+++ .+.++...+..
T Consensus 64 ~~~~~iytG~~-PSG~-lHLGh~~~---~~~~~~lQ~-~g~~~~i~IaD~-ha~~-----~-~~~~~e-~~~~~~~~~~~ 129 (368)
T PRK12285 64 GKPFAVYTGFM-PSGP-MHIGHKMV---FDELKWHQE-FGANVYIPIADD-EAYA-----A-RGLSWE-ETREWAYEYIL 129 (368)
T ss_pred CCCeEEEEccC-CCCC-ccHHHHHH---HHHHHHHHh-cCCCEEEEecch-HHHh-----c-CCCCHH-HHHHHHHHHHH
Confidence 45677777753 5587 99999753 445666676 788876555433 3221 1 133433 45556666778
Q ss_pred HHHHcCCccc
Q 002217 173 QLKSLGFSYD 182 (952)
Q Consensus 173 ~l~~lgi~~D 182 (952)
++.++|+..|
T Consensus 130 ~~lA~G~Dp~ 139 (368)
T PRK12285 130 DLIALGFDPD 139 (368)
T ss_pred HHHHhCCCcc
Confidence 9999998544
No 136
>PRK12300 leuS leucyl-tRNA synthetase; Reviewed
Probab=84.43 E-value=1.6 Score=56.20 Aligned_cols=78 Identities=23% Similarity=0.302 Sum_probs=60.3
Q ss_pred HHHHHHHHHHHHHHCCceeeeccccccCCCCCcccCchhhccCccccCCCCeEEeec-cccchhhh--hhhhHhhccCCC
Q 002217 194 YYKWTQWIFLQLLKRGLAYQAEVPVNWCPALGTVLANEEVVDGVSERGGHPVIRKPM-RQWMLKIT--EYADRLLDDLDD 270 (952)
Q Consensus 194 ~~~~v~~~f~~L~~kGliy~~~~~v~wc~~~~t~ls~~Ev~~~~~~~~~~~~~~~~~-~~~~~~i~--~y~~~l~~~l~~ 270 (952)
..++-..+...|.++|++.......+ .+.|+|||.+++.+.+ .|||++++ .+++.+++.+++
T Consensus 354 v~eA~~~I~~~L~~~g~~~~~~~~~~---------------~~~~~R~~~~~i~~~~~~QWFi~~~~~~~k~~~~~~~~~ 418 (897)
T PRK12300 354 VREAREKITKDLIEKGIADIMYEFSN---------------RPVYCRCGTECVVKVVKDQWFIDYSDPEWKELAHKALDN 418 (897)
T ss_pred HHHHHHHHHHHHHHCCCeEEEEecCC---------------CCcCcCCCCEEEEEecCCceEEEcCcHHHHHHHHHHHcc
Confidence 44566778889999999977532111 2345588888888765 99999998 799999999998
Q ss_pred CC-CchHHHHHHHhhhc
Q 002217 271 LD-WPESVKEMQRNWIG 286 (952)
Q Consensus 271 ~~-~p~~~~~~~~~~i~ 286 (952)
.. +|+.+++...+||.
T Consensus 419 ~~~~P~~~~~~~~~~l~ 435 (897)
T PRK12300 419 MEIIPEEYRKEFENTID 435 (897)
T ss_pred CEEECHHHHHHHHHHHh
Confidence 88 49999988888873
No 137
>PRK12284 tryptophanyl-tRNA synthetase; Reviewed
Probab=84.28 E-value=1.4 Score=50.96 Aligned_cols=24 Identities=17% Similarity=0.054 Sum_probs=17.6
Q ss_pred CCceeEecCchhhHHHHHHHHHHHH
Q 002217 601 SPVDVYVGGAEHAVLHLLYARFWHK 625 (952)
Q Consensus 601 ~PvDlyv~G~D~~~~HLly~Rfw~~ 625 (952)
|-+|+..-|.||. -|+-.+|=...
T Consensus 147 y~ad~VPVG~DQ~-qHlELaRdIA~ 170 (431)
T PRK12284 147 FNAHKVPVGRDQI-QHIEMARDIAQ 170 (431)
T ss_pred cCCCEEEEcchhH-HHHHHHHHHHH
Confidence 4679999999995 46666776643
No 138
>PLN02486 aminoacyl-tRNA ligase
Probab=83.88 E-value=5.4 Score=45.93 Aligned_cols=79 Identities=19% Similarity=0.245 Sum_probs=48.3
Q ss_pred CCCcEEEEcCCCCCCCCCCCCchhHHHHHHHHHHHHHHHcCCcccccccccccChHHHHHHHHhCCCchHHHHHHHHHHH
Q 002217 92 SKPKFYVLDMFPYPSGAGLHVGHPLGYTATDILARLKRMQGYNVLHPMGWDAFGLPAEQYAIETGTHPKITTLRNINRFR 171 (952)
Q Consensus 92 ~k~kf~i~~~~Pypng~~lHiGH~~~~~~~Di~~Ry~r~~G~~V~~~~G~D~~Glpie~~a~~~g~~~~~~~~~~~~~~~ 171 (952)
.+++|++..|. -|+|..+||||+.. ...+..+++..|..+....+ |. |....+ +.+ .+.+.++.....
T Consensus 70 ~~~~~~vYtG~-~PSg~~lHlGHlv~---~~~~~~lQ~~~~~~~~I~ia-D~-----e~~~~~-~~~-~e~i~~~~~en~ 137 (383)
T PLN02486 70 KGEKFYLYTGR-GPSSEALHLGHLIP---FMFTKYLQDAFKVPLVIQLT-DD-----EKFLWK-NLS-VEESQRLARENA 137 (383)
T ss_pred cCCCeEEEeCC-CCCCccccHHHHHH---HHHHHHHHHhCCCeEEEEec-CH-----HHHhhc-CCC-HHHHHHHHHHHH
Confidence 35567787775 46662399999655 34445566666766665543 43 444444 333 344556666677
Q ss_pred HHHHHcCCccc
Q 002217 172 TQLKSLGFSYD 182 (952)
Q Consensus 172 ~~l~~lgi~~D 182 (952)
..+.++|+..+
T Consensus 138 ~~iiA~G~dp~ 148 (383)
T PLN02486 138 KDIIACGFDVE 148 (383)
T ss_pred HHHHHhCCCCc
Confidence 77888998654
No 139
>COG0495 LeuS Leucyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=82.75 E-value=0.061 Score=66.62 Aligned_cols=99 Identities=24% Similarity=0.314 Sum_probs=62.7
Q ss_pred EEEecCCcchhccccEEEECCCCccchhhccccc-h-HHHHHHHHHHhccchhhHhhhhhcccccccceEEecCCCCCc-
Q 002217 309 ITVYTTRPDTIFGATYLVVAPEHPLLSSLVSTTQ-S-QNIEEYKNLASRKSDLERTELQKEKTGVFSGCYARNPASGEA- 385 (952)
Q Consensus 309 i~i~TT~P~Tl~g~~~v~v~p~~~y~~~~~~~~~-~-~~~~~y~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~P~~~~~- 385 (952)
....|.+|||+.|.+..+|+|+..|......... . ..++.|-. ..+ ...+-.+.+.-..||+.++.
T Consensus 208 ~~l~~~wPE~Vk~mq~nWIg~s~g~~v~f~~~~~~~~~~~~vftt----r~d-------t~~gvt~~~~a~~h~lv~~~~ 276 (814)
T COG0495 208 DKLATLWPETVKGMQRNWIGPSEGYEVAFVVDGEEEIVSIEVFTT----RPD-------TLFGVTYVVLAPEHPLVGKLV 276 (814)
T ss_pred hhhccCCchhHHHHHHcCcCCCCCeEEEEecCCcccceeeeeeec----cCc-------cccCeEEEEEeCCchHHHHHh
Confidence 4556679999999999999999988765542111 0 00011100 000 00111233344456665532
Q ss_pred -cc--EEecCcccCCCCCCceEecCCCChhhHHHHH
Q 002217 386 -IP--IWVADYVLGSYGTGAIMAVPAHDTRDHEFAL 418 (952)
Q Consensus 386 -~p--v~~~~~V~~~~GTG~V~~~Pah~~~D~~~~~ 418 (952)
-| +.+++||....|||.|+.+|+|.+.|+.+-.
T Consensus 277 ~~~~~~~~a~fv~~~~~~~~~~~~~~~~~k~gv~~g 312 (814)
T COG0495 277 TNPQTPLVAEFVDECKGTGVVESVPAHAEKDGVFLG 312 (814)
T ss_pred cCccchhHHHHHHHhcCCCceeeeeccCCCcceecc
Confidence 22 7889999999999999999999999987644
No 140
>PRK04156 gltX glutamyl-tRNA synthetase; Provisional
Probab=81.38 E-value=1.3 Score=53.33 Aligned_cols=54 Identities=13% Similarity=0.137 Sum_probs=42.9
Q ss_pred cccccccCC-------C--------CCCChhhHHhh-hCchhhhhhhhhcCCCCCCCCCChhhHHHHHHH
Q 002217 706 RAHKMSKSR-------G--------NVVNPDDVVTE-YGADSLRLYEMFMGPFRDSKTWNTSGIEGVHRF 759 (952)
Q Consensus 706 ~g~KMSKSk-------G--------NvV~P~eii~~-YGaDalRl~ll~~~~~~~~~~~s~~~i~~~~r~ 759 (952)
+|.|||||+ | +..+...+.++ |-++++|-|++..+....+..++.+.+....|.
T Consensus 335 ~g~kLSKR~~~~~i~~g~~~gWDDpr~~Tl~~lrrrG~~PeAi~~fl~~lG~s~~~~~~~~~~L~~~nr~ 404 (567)
T PRK04156 335 EGFVLSTSKIRKGIEEGEYSGWDDPRLPTLRALRRRGILPEAIRELIIEVGVKETDATISWENLYAINRK 404 (567)
T ss_pred CCceeecccchhccccCccccccCCchHHHHHHHHcCCCHHHHHHHHHHhCCCCCCcccCHHHHHHHHHH
Confidence 489999999 4 23455666665 999999999998888778888999988887664
No 141
>TIGR00233 trpS tryptophanyl-tRNA synthetase. This model represents tryptophanyl-tRNA synthetase. Some members of the family have a pfam00458 domain amino-terminal to the region described by this model.
Probab=81.28 E-value=1.7 Score=49.05 Aligned_cols=24 Identities=21% Similarity=0.195 Sum_probs=17.0
Q ss_pred CCceeEecCchhhHHHHHHHHHHHH
Q 002217 601 SPVDVYVGGAEHAVLHLLYARFWHK 625 (952)
Q Consensus 601 ~PvDlyv~G~D~~~~HLly~Rfw~~ 625 (952)
+-+|+...|.||.. |+-.+|=...
T Consensus 138 ~~~d~vpvG~DQ~~-h~elaRdia~ 161 (328)
T TIGR00233 138 YQADLVPVGIDQDQ-HLELTRDLAE 161 (328)
T ss_pred cCCCeeecccccHH-HHHHHHHHHH
Confidence 46899999999964 5455666643
No 142
>PRK08560 tyrosyl-tRNA synthetase; Validated
Probab=79.83 E-value=1.3 Score=49.99 Aligned_cols=71 Identities=23% Similarity=0.291 Sum_probs=37.0
Q ss_pred cEEEEcCCCCCCCCCCCCchhHHHHHHHHHHHHHHHcCCcccccccccccChHHHHHHHHhCCCchHHHHHHHHHHHHHH
Q 002217 95 KFYVLDMFPYPSGAGLHVGHPLGYTATDILARLKRMQGYNVLHPMGWDAFGLPAEQYAIETGTHPKITTLRNINRFRTQL 174 (952)
Q Consensus 95 kf~i~~~~Pypng~~lHiGH~~~~~~~Di~~Ry~r~~G~~V~~~~G~D~~Glpie~~a~~~g~~~~~~~~~~~~~~~~~l 174 (952)
+++++.|+ -|+|. +||||... ---+.++++ .|+++.+..+ |-|++-. ... ..+...++...+..++
T Consensus 30 ~~~v~~G~-~PTG~-lHLG~~~~---~~~~~~lq~-~g~~~~i~Ia-D~ha~~~------~~~-~~~~i~~~~~~~~~~~ 95 (329)
T PRK08560 30 EPKAYIGF-EPSGK-IHLGHLLT---MNKLADLQK-AGFKVTVLLA-DWHAYLN------DKG-DLEEIRKVAEYNKKVF 95 (329)
T ss_pred CCEEEEcc-CCCCc-chhhhhHH---HHHHHHHHH-CCCeEEEEEc-cchhhcC------CCC-CHHHHHHHHHHHHHHH
Confidence 33444453 46677 88887442 222566665 3776654443 2233211 001 2334555666677777
Q ss_pred HHcCC
Q 002217 175 KSLGF 179 (952)
Q Consensus 175 ~~lgi 179 (952)
.++|+
T Consensus 96 ~A~G~ 100 (329)
T PRK08560 96 EALGL 100 (329)
T ss_pred HHcCC
Confidence 77776
No 143
>PTZ00126 tyrosyl-tRNA synthetase; Provisional
Probab=76.65 E-value=2 Score=49.40 Aligned_cols=23 Identities=22% Similarity=0.322 Sum_probs=16.5
Q ss_pred CCceeEecCchhhHHHHHHHHHHH
Q 002217 601 SPVDVYVGGAEHAVLHLLYARFWH 624 (952)
Q Consensus 601 ~PvDlyv~G~D~~~~HLly~Rfw~ 624 (952)
+-+|+..+|.||...|.| +|=..
T Consensus 209 l~adivpvG~DQ~~~~~L-aRdia 231 (383)
T PTZ00126 209 LKADICQLGMDQRKVNML-AREYC 231 (383)
T ss_pred cCCCEEEeCccHHHHHHH-HHHHH
Confidence 579999999999654443 55553
No 144
>PRK00927 tryptophanyl-tRNA synthetase; Reviewed
Probab=76.56 E-value=2.7 Score=47.59 Aligned_cols=63 Identities=21% Similarity=0.342 Sum_probs=35.1
Q ss_pred CCCCCCCCCchhHHHHHHHHHHHHHHHcCCcccccccccccChHHHHHHHHhCCCchHHHHHHHHHHHHHHHHcCCc
Q 002217 104 YPSGAGLHVGHPLGYTATDILARLKRMQGYNVLHPMGWDAFGLPAEQYAIETGTHPKITTLRNINRFRTQLKSLGFS 180 (952)
Q Consensus 104 ypng~~lHiGH~~~~~~~Di~~Ry~r~~G~~V~~~~G~D~~Glpie~~a~~~g~~~~~~~~~~~~~~~~~l~~lgi~ 180 (952)
-|+|. +||||..+.+.+ +.+++.. ++|.+..+ |-|.+-. ..+ .+...+++..+..++.++|+.
T Consensus 9 ~PTG~-lHLG~~~g~~~~--~~~lQ~~--~~~~~~Ia-D~ha~t~-------~~~-~~~i~~~~~~~~~~~lA~GlD 71 (333)
T PRK00927 9 QPTGK-LHLGNYLGAIKN--WVELQDE--YECFFCIA-DLHALTV-------PQD-PEELRENTRELAADYLACGID 71 (333)
T ss_pred CCCcc-chHHhHHHHHHH--HHHHHhc--CCeEEEEe-cHHHHhC-------CCC-HHHHHHHHHHHHHHHHeEccC
Confidence 47787 899988876433 5555543 66655553 2222211 112 234455566667777777774
No 145
>cd00808 GluRS_core catalytic core domain of discriminating glutamyl-tRNA synthetase. Discriminating Glutamyl-tRNA synthetase (GluRS) catalytic core domain . The discriminating form of GluRS is only found in bacteria and cellular organelles. GluRS is a monomer that attaches Glu to the appropriate tRNA. Like other class I tRNA synthetases, GluRS aminoacylates the 2'-OH of the nucleotide at the 3' end of the tRNA. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. It contains the characteristic class I HIGH and KMSKS motifs, which are involved in ATP binding.
Probab=75.83 E-value=3 Score=44.84 Aligned_cols=35 Identities=26% Similarity=0.382 Sum_probs=26.5
Q ss_pred cccccccCCCCCCChhhHHh-hhCchhhhhhhhhcCC
Q 002217 706 RAHKMSKSRGNVVNPDDVVT-EYGADSLRLYEMFMGP 741 (952)
Q Consensus 706 ~g~KMSKSkGNvV~P~eii~-~YGaDalRl~ll~~~~ 741 (952)
+|.||||+.|| .+...+.+ .|-+.+++-|++..+-
T Consensus 159 ~g~KLSKR~~~-~~l~~lr~~G~~p~ai~~~l~~lG~ 194 (239)
T cd00808 159 DGKKLSKRKGD-TSISDYREEGYLPEALLNYLALLGW 194 (239)
T ss_pred CCCcccCCCCC-ccHHHHHHCCCCHHHHHHHHHHcCC
Confidence 47999999999 46666544 3778899988886553
No 146
>PLN02959 aminoacyl-tRNA ligase
Probab=75.59 E-value=3.6 Score=53.95 Aligned_cols=77 Identities=18% Similarity=0.257 Sum_probs=60.0
Q ss_pred HHHHHHHHHHHHHHCCceeeeccccccCCCCCcccCchhhccCccccCCCCeEEeeccccchhhh--hhhhHhhccCCCC
Q 002217 194 YYKWTQWIFLQLLKRGLAYQAEVPVNWCPALGTVLANEEVVDGVSERGGHPVIRKPMRQWMLKIT--EYADRLLDDLDDL 271 (952)
Q Consensus 194 ~~~~v~~~f~~L~~kGliy~~~~~v~wc~~~~t~ls~~Ev~~~~~~~~~~~~~~~~~~~~~~~i~--~y~~~l~~~l~~~ 271 (952)
..+.-..+...|.++|++.....+ ..+.++|||.+++.+...|||++++ ..++..++.++..
T Consensus 493 v~eAr~~Ii~~L~~~G~l~~~~ep----------------~~pv~~R~g~~~~v~l~~QWFi~~~~~~~k~~a~~~l~~v 556 (1084)
T PLN02959 493 VQEAKPLIKKKLIEAGQAILYSEP----------------EKKVMSRSGDECVVALTDQWYLTYGEEEWKKKAEKCLSKM 556 (1084)
T ss_pred HHHHHHHHHHHHHhCCCceeeeEc----------------CCCeEECCCCEEEEeecCCeeEECCchHHHHHHHHHHccc
Confidence 334556677889999976532222 1245789999999989999999998 6899999999888
Q ss_pred CC-chHHHHHHHhhhc
Q 002217 272 DW-PESVKEMQRNWIG 286 (952)
Q Consensus 272 ~~-p~~~~~~~~~~i~ 286 (952)
.| |+..++.-.+||.
T Consensus 557 ~~~P~~~~~~~~~wl~ 572 (1084)
T PLN02959 557 NLYSDETRHGFEHTLG 572 (1084)
T ss_pred EEECHHHHHHHHHHHh
Confidence 87 9999988888873
No 147
>PRK12282 tryptophanyl-tRNA synthetase II; Reviewed
Probab=74.95 E-value=2.9 Score=47.32 Aligned_cols=23 Identities=9% Similarity=-0.094 Sum_probs=16.1
Q ss_pred CCceeEecCchhhHHHHHHHHHHH
Q 002217 601 SPVDVYVGGAEHAVLHLLYARFWH 624 (952)
Q Consensus 601 ~PvDlyv~G~D~~~~HLly~Rfw~ 624 (952)
|.+|+...|.||-..|.| +|=..
T Consensus 141 ~~~d~vpvG~DQ~~h~~l-aRdiA 163 (333)
T PRK12282 141 FKATLVPVGDDQLPMIEQ-TREIV 163 (333)
T ss_pred hCCCEEEeccccHHHHHH-HHHHH
Confidence 578999999999644433 45443
No 148
>cd00806 TrpRS_core catalytic core domain of tryptophanyl-tRNA synthetase. Tryptophanyl-tRNA synthetase (TrpRS) catalytic core domain. TrpRS is a homodimer which attaches Tyr to the appropriate tRNA. TrpRS is a class I tRNA synthetases, so it aminoacylates the 2'-OH of the nucleotide at the 3' end of the tRNA. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. It contains class I characteristic HIGH and KMSKS motifs, which are involved in ATP binding
Probab=74.08 E-value=2.8 Score=46.24 Aligned_cols=65 Identities=25% Similarity=0.357 Sum_probs=39.7
Q ss_pred CCCCCCCCCchhHHHHHHHHHHHHHHHcCCcccccccccccChHHHHHHHHhCCCchHHHHHHHHHHHHHHHHcCCc
Q 002217 104 YPSGAGLHVGHPLGYTATDILARLKRMQGYNVLHPMGWDAFGLPAEQYAIETGTHPKITTLRNINRFRTQLKSLGFS 180 (952)
Q Consensus 104 ypng~~lHiGH~~~~~~~Di~~Ry~r~~G~~V~~~~G~D~~Glpie~~a~~~g~~~~~~~~~~~~~~~~~l~~lgi~ 180 (952)
-|+|. |||||..+.+.. +.++++. |+++.+..+ |.|.+-. ... ..+...+++..+..++.++|+.
T Consensus 7 ~PTG~-lHLG~~~~al~~--~~~lQ~a-g~~~~~~Ia-D~ha~t~------~~~-~~~~~~~~~~~~~~~~lA~G~d 71 (280)
T cd00806 7 QPSGS-LHLGHYLGAFRF--WVWLQEA-GYELFFFIA-DLHALTV------KQL-DPEELRQNTRENAKDYLACGLD 71 (280)
T ss_pred CCCch-hhHHHHHHHHHH--HHHHHhC-CCCEEEEec-chHHHhC------CCC-CHHHHHHHHHHHHHHHHHcCCC
Confidence 36786 999998884433 3444443 888765554 3334311 111 2345667778888888898883
No 149
>COG0525 ValS Valyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=73.17 E-value=5.5 Score=49.99 Aligned_cols=77 Identities=25% Similarity=0.467 Sum_probs=58.8
Q ss_pred HHHHHHHHHHHHCCceeeeccccccCCCCCcccCchhhccCccccCCCCeEEeeccccchhhhhhhhHhhccCC--CCCC
Q 002217 196 KWTQWIFLQLLKRGLAYQAEVPVNWCPALGTVLANEEVVDGVSERGGHPVIRKPMRQWMLKITEYADRLLDDLD--DLDW 273 (952)
Q Consensus 196 ~~v~~~f~~L~~kGliy~~~~~v~wc~~~~t~ls~~Ev~~~~~~~~~~~~~~~~~~~~~~~i~~y~~~l~~~l~--~~~~ 273 (952)
++-..+...|-+.|++.+.+.... .=|+|+|||.+++-.-.+|||+++..+++..++..+ ..+|
T Consensus 315 eAR~kIv~~L~~~GlLvk~e~~~h--------------~V~~~~R~g~~IEp~ls~QWfVk~~~la~~~l~~~~~g~i~f 380 (877)
T COG0525 315 EARKKIVEDLEEQGLLVKIEPHKH--------------SVGHCERCGTPIEPLLSKQWFVKVLELAKKALEAVKDGKIKF 380 (877)
T ss_pred HHHHHHHHHHHhCCCeEeeeeccc--------------cCccccCCCceeeeeecceeeEEhHhhHHHHHHHHhcCCceE
Confidence 445678889999999998754311 013455566666667778999999999999999888 5564
Q ss_pred -chHHHHHHHhhhc
Q 002217 274 -PESVKEMQRNWIG 286 (952)
Q Consensus 274 -p~~~~~~~~~~i~ 286 (952)
|+.....-.+|+.
T Consensus 381 ~P~~~~~~~~~W~~ 394 (877)
T COG0525 381 VPERMEKRYEDWME 394 (877)
T ss_pred ecHHHHHHHHHHHh
Confidence 9999999999984
No 150
>cd00806 TrpRS_core catalytic core domain of tryptophanyl-tRNA synthetase. Tryptophanyl-tRNA synthetase (TrpRS) catalytic core domain. TrpRS is a homodimer which attaches Tyr to the appropriate tRNA. TrpRS is a class I tRNA synthetases, so it aminoacylates the 2'-OH of the nucleotide at the 3' end of the tRNA. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. It contains class I characteristic HIGH and KMSKS motifs, which are involved in ATP binding
Probab=72.78 E-value=7.2 Score=43.06 Aligned_cols=15 Identities=47% Similarity=0.448 Sum_probs=12.5
Q ss_pred cccccCCC-CCCChhh
Q 002217 708 HKMSKSRG-NVVNPDD 722 (952)
Q Consensus 708 ~KMSKSkG-NvV~P~e 722 (952)
.|||||.+ |.|...|
T Consensus 190 ~KMSKS~~~~~I~L~d 205 (280)
T cd00806 190 KKMSKSDPNNAIFLTD 205 (280)
T ss_pred CcccCCCCCCeEEeeC
Confidence 69999999 8887654
No 151
>TIGR00234 tyrS tyrosyl-tRNA synthetase. This tyrosyl-tRNA synthetase model starts picking up tryptophanyl-tRNA synthetases at scores of 0 and below. The proteins found by this model have a deep split between two groups. One group contains bacterial and organellar eukaryotic examples. The other contains archaeal and cytosolic eukaryotic examples.
Probab=72.39 E-value=3.5 Score=47.52 Aligned_cols=40 Identities=25% Similarity=0.403 Sum_probs=24.3
Q ss_pred EEEEcCCCCCCCCCCCCchhHHHHHHHHHHHHHHHcCCccccccc
Q 002217 96 FYVLDMFPYPSGAGLHVGHPLGYTATDILARLKRMQGYNVLHPMG 140 (952)
Q Consensus 96 f~i~~~~Pypng~~lHiGH~~~~~~~Di~~Ry~r~~G~~V~~~~G 140 (952)
+.++.|+ -|+|+.||+||+.. --.+.|+++ .|++|.+..|
T Consensus 31 ~~vy~G~-dPTg~~lHlGh~v~---l~~l~~lq~-~G~~~~ilig 70 (377)
T TIGR00234 31 IKLYVGF-DPTAPSLHLGHLVP---LLKLRDFQQ-AGHEVIVLLG 70 (377)
T ss_pred CEEEEee-CCCCCCccHHHHHH---HHHHHHHHH-CCCcEEEEEe
Confidence 4445554 36662289999774 223455555 6888876664
No 152
>cd07956 Anticodon_Ia_Arg Anticodon-binding domain of arginyl tRNA synthetases. This domain is found in arginyl tRNA synthetases (ArgRS), which belong to the class Ia aminoacyl tRNA synthetases. It lies C-terminal to the catalytic core domain, and recognizes and specifically binds to the tRNA anticodon. ArgRS catalyzes the transfer of arginine to the 3'-end of its tRNA.
Probab=71.88 E-value=23 Score=35.24 Aligned_cols=102 Identities=14% Similarity=0.064 Sum_probs=58.2
Q ss_pred hhCchhhhhhhhhcCCCCCCCCCChhhHHH-----------HHHHHHHHHHHHhccCCCCCCCCCCccCCCCCChHHHHH
Q 002217 726 EYGADSLRLYEMFMGPFRDSKTWNTSGIEG-----------VHRFLGRMWRLIVGSSLPDGTFKGGTVVNDEEPTLEQLC 794 (952)
Q Consensus 726 ~YGaDalRl~ll~~~~~~~~~~~s~~~i~~-----------~~r~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~d~~~l~ 794 (952)
+.|.|++||++++. .......|+.+.+.. ++..+.++.+-.-.........+. ..-..+.+..++.
T Consensus 2 ~i~~~a~~~~~l~~-~~~~~~~fd~~~~~~~~~~~~~yi~ya~aRi~nIl~k~~~~~~~~~~~~~--~ll~~~~E~~L~~ 78 (156)
T cd07956 2 EVGVGAVKYQDLSN-KRIKDYTFDWERMLSFEGDTGPYLQYAHARLCSILRKAGETIEAEADADL--SLLPEPDERDLIL 78 (156)
T ss_pred ccchhHHHHHHHhc-CCCCCceecHHHHHhhcCCCchhHHHHHHHHHHHHHhCCCcCccccccch--hhcCCHHHHHHHH
Confidence 45789999999954 455566677655321 233333333221100000000000 0001112334466
Q ss_pred HHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHhccc
Q 002217 795 TLHKCIAKVTEEIEGTRFNTGISAMMEFINAAYKWE 830 (952)
Q Consensus 795 ~l~~~i~~v~~~~e~~~f~~ai~~l~~f~~~~~~~~ 830 (952)
.+..+.+.+..++.+.+++.++..+.++....++|+
T Consensus 79 ~l~~~~~~i~~~~~~~~~~~l~~~l~~L~~~~~~ff 114 (156)
T cd07956 79 LLAKFPEVVKNAAETLEPHTIATYLFDLAHAFSKFY 114 (156)
T ss_pred HHHHhHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHH
Confidence 677777777888889999999999999998888765
No 153
>cd00395 Tyr_Trp_RS_core catalytic core domain of tyrosinyl-tRNA and tryptophanyl-tRNA synthetase. Tyrosinyl-tRNA synthetase (TyrRS)/Tryptophanyl-tRNA synthetase (TrpRS) catalytic core domain. These enzymes attach Tyr or Trp, respectively, to the appropriate tRNA. These class I enzymes are homodimers, which aminoacylate the 2'-OH of the nucleotide at the 3' of the appropriate tRNA. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. It contains the class I characteristic HIGH and KMSKS motifs, which are involved in ATP binding.
Probab=71.53 E-value=6.5 Score=43.24 Aligned_cols=14 Identities=21% Similarity=0.093 Sum_probs=11.8
Q ss_pred cccccccCCCCCCC
Q 002217 706 RAHKMSKSRGNVVN 719 (952)
Q Consensus 706 ~g~KMSKSkGNvV~ 719 (952)
+|.|||||.+|.+.
T Consensus 195 ~G~KMSKS~~~~i~ 208 (273)
T cd00395 195 DGPKFGKSESGPKW 208 (273)
T ss_pred CCCcCCCCCCCCcc
Confidence 37899999999873
No 154
>PF01927 Mut7-C: Mut7-C RNAse domain; InterPro: IPR002782 This prokaryotic family of proteins have no known function. The proteins contain four conserved cysteines that may be involved in metal binding or disulphide bridges.
Probab=71.20 E-value=5.4 Score=39.57 Aligned_cols=31 Identities=35% Similarity=0.437 Sum_probs=23.6
Q ss_pred HHHHHHHcCCcccccccccccChHHHHHHHHhC
Q 002217 124 LARLKRMQGYNVLHPMGWDAFGLPAEQYAIETG 156 (952)
Q Consensus 124 ~~Ry~r~~G~~V~~~~G~D~~Glpie~~a~~~g 156 (952)
++||+|+.||+|.+..+.++..+ ...|.++|
T Consensus 12 Lar~LR~lG~Dt~~~~~~~D~~i--l~~A~~e~ 42 (147)
T PF01927_consen 12 LARWLRLLGYDTLYSRDIDDDEI--LELAREEG 42 (147)
T ss_pred HHHHHHHCCCcEEEeCCCChHHH--HHHhhhCC
Confidence 68999999999999998766554 34555544
No 155
>COG0162 TyrS Tyrosyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=70.46 E-value=2.2 Score=49.22 Aligned_cols=12 Identities=25% Similarity=0.559 Sum_probs=10.4
Q ss_pred CCceeEecCchh
Q 002217 601 SPVDVYVGGAEH 612 (952)
Q Consensus 601 ~PvDlyv~G~D~ 612 (952)
.-+|+-+||.||
T Consensus 179 L~~dlq~GG~DQ 190 (401)
T COG0162 179 LNKDLQLGGSDQ 190 (401)
T ss_pred HccchhcCChHH
Confidence 357899999999
No 156
>COG0180 TrpS Tryptophanyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=70.24 E-value=18 Score=40.34 Aligned_cols=90 Identities=18% Similarity=0.202 Sum_probs=56.8
Q ss_pred cEEEEcCCCCCCCCCCCCchhHHHHHHHHHHHHHHHcCC-cccccccccccChHHHHHHHHhCCCchHHHHHHHHHHHHH
Q 002217 95 KFYVLDMFPYPSGAGLHVGHPLGYTATDILARLKRMQGY-NVLHPMGWDAFGLPAEQYAIETGTHPKITTLRNINRFRTQ 173 (952)
Q Consensus 95 kf~i~~~~Pypng~~lHiGH~~~~~~~Di~~Ry~r~~G~-~V~~~~G~D~~Glpie~~a~~~g~~~~~~~~~~~~~~~~~ 173 (952)
++.|++|. -|+|. |||||..+.+. .+++-..++ ++ |.+=.|.|.+-+ .+..+.+...+++..+..+
T Consensus 5 ~~~vlSG~-~PSG~-lHLGny~ga~~----~~v~~q~~~~~~-f~~IaDlha~t~------~~~~~~~~l~~~~~e~~a~ 71 (314)
T COG0180 5 KFRVLSGI-QPSGK-LHLGNYLGAIR----NWVLLQEEYYEC-FFFIADLHAITV------RQDPTEEDLRQATREVAAD 71 (314)
T ss_pred CceEEecC-CCCCC-cchhHhHHHHH----HHHHHhcccCce-EEEEecHHHhhc------CCCChHHHHHHHHHHHHHH
Confidence 45566663 48998 99999999743 355555564 54 455566666543 3333446667777888888
Q ss_pred HHHcCCccccCC-cccCCChhHHHH
Q 002217 174 LKSLGFSYDWNR-EISTIEPAYYKW 197 (952)
Q Consensus 174 l~~lgi~~Dw~~-~~~T~~~~~~~~ 197 (952)
+-++|+..+=.. +..+.-|++.+.
T Consensus 72 ~LA~GiDP~k~~if~QS~v~e~~eL 96 (314)
T COG0180 72 YLAVGLDPEKSTIFLQSEVPEHAEL 96 (314)
T ss_pred HHHhccCccccEEEEccCchHHHHH
Confidence 999999776211 234445666554
No 157
>KOG0434 consensus Isoleucyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=70.08 E-value=4.8 Score=48.30 Aligned_cols=84 Identities=21% Similarity=0.515 Sum_probs=64.0
Q ss_pred HHHHHHHCCceeeeccccccCCCCCccc-------------------------------Cchhh--ccCccccCCCCeEE
Q 002217 201 IFLQLLKRGLAYQAEVPVNWCPALGTVL-------------------------------ANEEV--VDGVSERGGHPVIR 247 (952)
Q Consensus 201 ~f~~L~~kGliy~~~~~v~wc~~~~t~l-------------------------------s~~Ev--~~~~~~~~~~~~~~ 247 (952)
=+....++|.|-++..++ ||.+...+ -..++ .++-||+++.|...
T Consensus 333 Dy~~c~~~giI~~d~~~~--cpVDe~G~~Tsev~dfaG~YVKDaDK~Ii~~lk~~g~lv~~~~i~HsYPFCWRSDTPLiY 410 (1070)
T KOG0434|consen 333 DYRACVANGIIRKDSLPP--CPVDESGLFTSEVTDFAGQYVKDADKLIIRSLKASGRLVKASQITHSYPFCWRSDTPLIY 410 (1070)
T ss_pred hHHHHHHcCcccCCCCCC--CccccCCccccccccccceeeccchHHHHHHHHhcCceeeeeeeeeccCceecCCChHHH
Confidence 345567899998887765 66544333 22233 26789999999999
Q ss_pred eeccccchhhhhhhhHhhccCCCCCC-chHHHHH-HHhhhc
Q 002217 248 KPMRQWMLKITEYADRLLDDLDDLDW-PESVKEM-QRNWIG 286 (952)
Q Consensus 248 ~~~~~~~~~i~~y~~~l~~~l~~~~~-p~~~~~~-~~~~i~ 286 (952)
|..++||.+.....++|++--+...| |..+|.- -.|||.
T Consensus 411 raVPsWFVrVk~~v~~ll~nn~~t~WVP~~ikeKRF~NWL~ 451 (1070)
T KOG0434|consen 411 RAVPSWFVRVKNIVDQLLRNNMKTHWVPQNIKEKRFANWLK 451 (1070)
T ss_pred hhccHhhhhHHHHHHHHHhcccccccCChhhhHHHHHHHHh
Confidence 99999999999999999998888888 8888654 578873
No 158
>PRK12285 tryptophanyl-tRNA synthetase; Reviewed
Probab=69.98 E-value=5.9 Score=45.45 Aligned_cols=25 Identities=12% Similarity=0.065 Sum_probs=17.2
Q ss_pred CCceeEecCchhhHHHHHHHHHHHHH
Q 002217 601 SPVDVYVGGAEHAVLHLLYARFWHKV 626 (952)
Q Consensus 601 ~PvDlyv~G~D~~~~HLly~Rfw~~~ 626 (952)
+-.|+...|.||. -|+-.+|=....
T Consensus 202 ~~~~lvPvG~DQ~-~h~~ltRdiA~r 226 (368)
T PRK12285 202 PKPTLVPVGIDQD-PHIRLTRDIAER 226 (368)
T ss_pred CCceEEEeccchH-HHHHHHHHHHHH
Confidence 3568999999995 455556666443
No 159
>COG1656 Uncharacterized conserved protein [Function unknown]
Probab=69.38 E-value=6.2 Score=39.46 Aligned_cols=94 Identities=23% Similarity=0.272 Sum_probs=51.5
Q ss_pred HHHHHHHcCCcccccc-cccccChHHHHHHHHhCCCchHHHHHHHHHHHHHHHHcCCccccCCcccCCChhHHHHHHHHH
Q 002217 124 LARLKRMQGYNVLHPM-GWDAFGLPAEQYAIETGTHPKITTLRNINRFRTQLKSLGFSYDWNREISTIEPAYYKWTQWIF 202 (952)
Q Consensus 124 ~~Ry~r~~G~~V~~~~-G~D~~Glpie~~a~~~g~~~~~~~~~~~~~~~~~l~~lgi~~Dw~~~~~T~~~~~~~~v~~~f 202 (952)
+||++|+.||++.+.. ..|. .+...|.+.|- .+..+-..-++.. ++|+. .+.-.+.+..+.+.++.
T Consensus 18 LARwLRllGydt~~~~~~~d~---~i~~i~~~e~r---IllTRDr~L~~r~--k~g~~-----~i~i~~~s~~~Ql~e~~ 84 (165)
T COG1656 18 LARWLRLLGYDTVYSSNESDD---EIILIAKKEGR---ILLTRDRELYKRA--KLGIK-----AILIRSDSIEEQLAEFL 84 (165)
T ss_pred HHHHHHHcCCceeeeccCCcH---HHHHHHhcCCe---EEEeccHHHHHHh--hccCc-----eEEEeCCCHHHHHHHHH
Confidence 6999999999999986 4432 23344444441 1111111112222 46662 23333445556666666
Q ss_pred HHHHHCCceeeeccc-cccCCCCCcccC---chhhc
Q 002217 203 LQLLKRGLAYQAEVP-VNWCPALGTVLA---NEEVV 234 (952)
Q Consensus 203 ~~L~~kGliy~~~~~-v~wc~~~~t~ls---~~Ev~ 234 (952)
.+|-.++ ...+ ..=||.|++.|. .+|++
T Consensus 85 ~~~~l~~----~~~~e~~RCp~CN~~L~~vs~eev~ 116 (165)
T COG1656 85 ARLGLKP----RLFPEFSRCPECNGELEKVSREEVK 116 (165)
T ss_pred HHhccch----hcccccccCcccCCEeccCcHHHHh
Confidence 6665555 2222 456999999884 45554
No 160
>PRK13354 tyrosyl-tRNA synthetase; Provisional
Probab=68.23 E-value=8.5 Score=44.87 Aligned_cols=30 Identities=23% Similarity=0.225 Sum_probs=19.3
Q ss_pred cccccccCCCCCCChhhHHhhhCchhhhhhhh
Q 002217 706 RAHKMSKSRGNVVNPDDVVTEYGADSLRLYEM 737 (952)
Q Consensus 706 ~g~KMSKSkGNvV~P~eii~~YGaDalRl~ll 737 (952)
+|.|||||.||.|...+= +..++.++=+++
T Consensus 227 dG~KMsKS~~naI~L~d~--~tsp~~i~qki~ 256 (410)
T PRK13354 227 DGTKMGKSAGGAIWLDPE--KTSPYEFYQFWM 256 (410)
T ss_pred CCCccCCCCCCceeccCC--CCCHHHHHHHHH
Confidence 378999999999876542 233444444444
No 161
>PRK12283 tryptophanyl-tRNA synthetase; Reviewed
Probab=68.20 E-value=6.3 Score=45.35 Aligned_cols=23 Identities=13% Similarity=0.081 Sum_probs=16.8
Q ss_pred CCceeEecCchhhHHHHHHHHHHH
Q 002217 601 SPVDVYVGGAEHAVLHLLYARFWH 624 (952)
Q Consensus 601 ~PvDlyv~G~D~~~~HLly~Rfw~ 624 (952)
|-+|+...|.||.. |+-.+|=..
T Consensus 141 ~~a~iVPVG~DQ~q-HleLaRdIA 163 (398)
T PRK12283 141 YRAGLVPVGEDQVP-HVEMTREIA 163 (398)
T ss_pred cCCCEeeeccccHH-HHHHHHHHH
Confidence 56899999999964 555566553
No 162
>TIGR00464 gltX_bact glutamyl-tRNA synthetase, bacterial family. The glutamyl-tRNA synthetases of the eukaryotic cytosol and of the Archaea are more similar to glutaminyl-tRNA synthetases than to bacterial glutamyl-tRNA synthetases. This alignment models just the bacterial and mitochondrial forms of the enzyme. In many species, the charging of tRNA(gln) proceeds first through misacylation with Glu and then transamidation. For this reason, glutamyl-tRNA synthetases may act on both tRNA(gln) and tRNA(glu). This model is highly specific. Proteins with positive scores below the trusted cutoff may be fragments rather than full-length sequences.
Probab=66.57 E-value=9.4 Score=45.40 Aligned_cols=34 Identities=24% Similarity=0.358 Sum_probs=27.1
Q ss_pred cccccccCCCCCCChhhHHhh-hCchhhhhhhhhcC
Q 002217 706 RAHKMSKSRGNVVNPDDVVTE-YGADSLRLYEMFMG 740 (952)
Q Consensus 706 ~g~KMSKSkGNvV~P~eii~~-YGaDalRl~ll~~~ 740 (952)
+|.||||.+| .++..++++. |-+.+++-|++..+
T Consensus 238 ~g~kLSKR~g-~~~l~~l~~~g~~p~a~~~~~~~lG 272 (470)
T TIGR00464 238 DGKKLSKRDG-ATSIMQFKEQGYLPEALINYLALLG 272 (470)
T ss_pred CCccccccCC-CccHHHHHHCCCCHHHHHHHHHHcC
Confidence 3789999999 8899999887 46777887776543
No 163
>PLN02886 aminoacyl-tRNA ligase
Probab=61.50 E-value=19 Score=41.44 Aligned_cols=91 Identities=16% Similarity=0.234 Sum_probs=50.9
Q ss_pred EEcCCCCCCCCCCCCchhHHHHHHHHHHHHHHHcCCcccccccccccChHHHHHHHHhCCCchHHHHHHHHHHHHHHHHc
Q 002217 98 VLDMFPYPSGAGLHVGHPLGYTATDILARLKRMQGYNVLHPMGWDAFGLPAEQYAIETGTHPKITTLRNINRFRTQLKSL 177 (952)
Q Consensus 98 i~~~~Pypng~~lHiGH~~~~~~~Di~~Ry~r~~G~~V~~~~G~D~~Glpie~~a~~~g~~~~~~~~~~~~~~~~~l~~l 177 (952)
+++|+ -|+|. +||||..+.+. -+.+++. |+++. .+=.|-|-+- ...++. ...+++..+...+.++
T Consensus 49 v~sGi-qPSG~-lHLGnylGai~--~~v~lQ~--~~~~~-~~IADlHAlt-------~~~~~~-~lr~~~~~~~a~~lA~ 113 (389)
T PLN02886 49 VVSGV-QPTGS-IHLGNYLGAIK--NWVALQE--TYDTF-FCVVDLHAIT-------LPHDPR-ELGKATRSTAAIYLAC 113 (389)
T ss_pred EEEEE-CCCCc-cHHHHHHHHHH--HHHHHhc--cCCEE-EEEecHHHhh-------CCCCHH-HHHHHHHHHHHHHHHc
Confidence 33443 36797 99999887652 3444554 77764 3334444431 122333 4556666788899999
Q ss_pred CCccccCCcc-cCCChhHHHHHHHHHHH
Q 002217 178 GFSYDWNREI-STIEPAYYKWTQWIFLQ 204 (952)
Q Consensus 178 gi~~Dw~~~~-~T~~~~~~~~v~~~f~~ 204 (952)
|+..+=...| .+..+++.+ ..|++..
T Consensus 114 GlDP~ks~if~QS~v~e~~e-L~wil~~ 140 (389)
T PLN02886 114 GIDPSKASVFVQSHVPAHAE-LMWLLSC 140 (389)
T ss_pred CcCccceEEEEeCCCchhHH-HHHHHHh
Confidence 9966522223 333455543 3455443
No 164
>cd00805 TyrRS_core catalytic core domain of tyrosinyl-tRNA synthetase. Tyrosinyl-tRNA synthetase (TyrRS) catalytic core domain. TyrRS is a homodimer which attaches Tyr to the appropriate tRNA. TyrRS is a class I tRNA synthetases, so it aminoacylates the 2'-OH of the nucleotide at the 3' end of the tRNA. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formationof the enzyme bound aminoacyl-adenylate. It contains the class I characteristic HIGH and KMSKS motifs, which are involved in ATP binding.
Probab=60.20 E-value=7 Score=42.88 Aligned_cols=14 Identities=50% Similarity=0.579 Sum_probs=12.1
Q ss_pred cccccccCCCCCCC
Q 002217 706 RAHKMSKSRGNVVN 719 (952)
Q Consensus 706 ~g~KMSKSkGNvV~ 719 (952)
+|+|||||.+|.++
T Consensus 192 ~G~KMSKS~~~~~~ 205 (269)
T cd00805 192 DGGKMSKSEGNAIW 205 (269)
T ss_pred CCCcccCCCCCccc
Confidence 37899999999884
No 165
>PRK08560 tyrosyl-tRNA synthetase; Validated
Probab=60.03 E-value=22 Score=40.22 Aligned_cols=22 Identities=32% Similarity=0.350 Sum_probs=15.0
Q ss_pred CCceeEecCchhhHHHHHHHHHH
Q 002217 601 SPVDVYVGGAEHAVLHLLYARFW 623 (952)
Q Consensus 601 ~PvDlyv~G~D~~~~HLly~Rfw 623 (952)
+.+|+..+|.||.. |+..+|=.
T Consensus 167 ~~ad~vpvG~DQ~~-h~~l~Rdi 188 (329)
T PRK08560 167 LDVDIAVGGMDQRK-IHMLAREV 188 (329)
T ss_pred hCCCEEEechhHHH-HHHHHHHh
Confidence 46899999999953 44444444
No 166
>PRK05912 tyrosyl-tRNA synthetase; Validated
Probab=57.58 E-value=23 Score=41.38 Aligned_cols=31 Identities=29% Similarity=0.232 Sum_probs=22.1
Q ss_pred cccccccCCCCCCChhhHHhhhCchhhhhhhhh
Q 002217 706 RAHKMSKSRGNVVNPDDVVTEYGADSLRLYEMF 738 (952)
Q Consensus 706 ~g~KMSKSkGNvV~P~eii~~YGaDalRl~ll~ 738 (952)
+|+|||||.||.|...+ ++..++.++=+++.
T Consensus 229 ~G~KMsKS~~naI~L~d--~~tsp~~i~qki~~ 259 (408)
T PRK05912 229 DGKKMGKSEGNAVWLDE--EKTSPYEMYQKWMN 259 (408)
T ss_pred CCCcccCCCCCceeCCC--CCCCHHHHHHHHhc
Confidence 37999999999998775 23345666656664
No 167
>COG0180 TrpS Tryptophanyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=54.73 E-value=15 Score=41.10 Aligned_cols=25 Identities=16% Similarity=0.113 Sum_probs=16.9
Q ss_pred CCceeEecCchhhHHHHHHHHHHHHH
Q 002217 601 SPVDVYVGGAEHAVLHLLYARFWHKV 626 (952)
Q Consensus 601 ~PvDlyv~G~D~~~~HLly~Rfw~~~ 626 (952)
|-+++..=|.||- -||=-+|=....
T Consensus 144 ~~a~~VPVG~DQ~-qHleLtRDiA~r 168 (314)
T COG0180 144 YQATLVPVGEDQD-QHLELTRDIARR 168 (314)
T ss_pred ccCCeeccCCCch-HHHHHHHHHHHH
Confidence 3467888899995 576666666443
No 168
>PRK00927 tryptophanyl-tRNA synthetase; Reviewed
Probab=53.88 E-value=17 Score=41.21 Aligned_cols=23 Identities=22% Similarity=0.173 Sum_probs=16.6
Q ss_pred CCceeEecCchhhHHHHHHHHHHH
Q 002217 601 SPVDVYVGGAEHAVLHLLYARFWH 624 (952)
Q Consensus 601 ~PvDlyv~G~D~~~~HLly~Rfw~ 624 (952)
+-+|+...|.||. -|+..+|=..
T Consensus 137 ~~~divpvG~DQ~-~h~elaRdia 159 (333)
T PRK00927 137 YKADLVPVGEDQK-QHLELTRDIA 159 (333)
T ss_pred cCCCEEeeccchH-HHHHHHHHHH
Confidence 4689999999995 4545466654
No 169
>PTZ00348 tyrosyl-tRNA synthetase; Provisional
Probab=51.62 E-value=12 Score=46.34 Aligned_cols=23 Identities=17% Similarity=0.141 Sum_probs=16.3
Q ss_pred CCceeEecCchhhHHHHHHHHHHH
Q 002217 601 SPVDVYVGGAEHAVLHLLYARFWH 624 (952)
Q Consensus 601 ~PvDlyv~G~D~~~~HLly~Rfw~ 624 (952)
+.+|+...|.||.. |+..+|=+.
T Consensus 174 l~adivpvG~DQ~q-h~eLaRdia 196 (682)
T PTZ00348 174 LKADICQLGLDQRK-VNMLAREYC 196 (682)
T ss_pred cCCCEEEeCccHHH-HHHHHHHHH
Confidence 57899999999964 434456554
No 170
>TIGR00233 trpS tryptophanyl-tRNA synthetase. This model represents tryptophanyl-tRNA synthetase. Some members of the family have a pfam00458 domain amino-terminal to the region described by this model.
Probab=51.05 E-value=33 Score=38.78 Aligned_cols=74 Identities=19% Similarity=0.330 Sum_probs=43.2
Q ss_pred EEEEcCCCCCCCCCCCCchhHHHHHHHHHHHHHHHcCCcccccccccccChHHHHHHHHhCCCchHHHHHHHHHHHHHHH
Q 002217 96 FYVLDMFPYPSGAGLHVGHPLGYTATDILARLKRMQGYNVLHPMGWDAFGLPAEQYAIETGTHPKITTLRNINRFRTQLK 175 (952)
Q Consensus 96 f~i~~~~Pypng~~lHiGH~~~~~~~Di~~Ry~r~~G~~V~~~~G~D~~Glpie~~a~~~g~~~~~~~~~~~~~~~~~l~ 175 (952)
++++.|. -|+|. +||||..+.+. .++.-..|+++.+..+ |-|.+-. ..+ +-.+....+...+...+.
T Consensus 3 ~~v~~G~-~PTG~-~HlG~~l~~~~----~~~~~q~~~~~~i~Ia-D~ha~t~-----~~~-~~~~~~~~~~~~~~~~~l 69 (328)
T TIGR00233 3 FRVLTGI-QPSGK-MHLGHYLGAIQ----TKWLQQFGVELFICIA-DLHAITV-----KDN-TDPDALRKAREELAADIL 69 (328)
T ss_pred CEEEEee-CCCcH-hHHHHHHHHHH----HHHHHhCCCCEEEEee-cchhhcC-----CCC-CCHHHHHHHHHHHHHHHH
Confidence 3455553 47787 99999887533 2344467888765554 3333211 111 122344555666777888
Q ss_pred HcCCccc
Q 002217 176 SLGFSYD 182 (952)
Q Consensus 176 ~lgi~~D 182 (952)
+.|+..|
T Consensus 70 A~GlDp~ 76 (328)
T TIGR00233 70 AVGLDPK 76 (328)
T ss_pred HhCcChh
Confidence 9999766
No 171
>COG0162 TyrS Tyrosyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=44.74 E-value=23 Score=41.07 Aligned_cols=75 Identities=27% Similarity=0.323 Sum_probs=40.6
Q ss_pred CCcEEEEcCCCCCCCCCCCCchhHHHHHHHHHHHHHHHcCCccccccccccc---ChHHHHHHHHhCCCchHHHHHHHHH
Q 002217 93 KPKFYVLDMFPYPSGAGLHVGHPLGYTATDILARLKRMQGYNVLHPMGWDAF---GLPAEQYAIETGTHPKITTLRNINR 169 (952)
Q Consensus 93 k~kf~i~~~~Pypng~~lHiGH~~~~~~~Di~~Ry~r~~G~~V~~~~G~D~~---Glpie~~a~~~g~~~~~~~~~~~~~ 169 (952)
..+.|+ |+ =|+|+.||+||+... -.+ |-....|++|....|= .| |.|. -....+..-.++...++++.
T Consensus 32 ~~~~Y~--Gf-DPTa~slHlGhlv~l---~kL-~~fQ~aGh~~ivLigd-~ta~IgDps-Gk~e~r~~l~~e~v~~n~~~ 102 (401)
T COG0162 32 PLRVYI--GF-DPTAPSLHLGHLVPL---MKL-RRFQDAGHKPIVLIGD-ATAMIGDPS-GKSEERKLLTRETVLENAET 102 (401)
T ss_pred CceEEE--ee-CCCCCccchhhHHHH---HHH-HHHHHCCCeEEEEecc-cceecCCCC-CCHHHHhhccHHHHHHHHHH
Confidence 344555 43 366734999998763 123 3345679999877762 23 4442 11112222234556666666
Q ss_pred HHHHHHH
Q 002217 170 FRTQLKS 176 (952)
Q Consensus 170 ~~~~l~~ 176 (952)
+++|+.+
T Consensus 103 i~~ql~~ 109 (401)
T COG0162 103 IKKQLGK 109 (401)
T ss_pred HHHHhcc
Confidence 6666543
No 172
>COG3171 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=41.85 E-value=45 Score=31.16 Aligned_cols=49 Identities=20% Similarity=0.411 Sum_probs=41.8
Q ss_pred HHHHHcCCccccCCcccCCChhHHHHHHHHHHHHHHC-Cceeeecccccc
Q 002217 172 TQLKSLGFSYDWNREISTIEPAYYKWTQWIFLQLLKR-GLAYQAEVPVNW 220 (952)
Q Consensus 172 ~~l~~lgi~~Dw~~~~~T~~~~~~~~v~~~f~~L~~k-Gliy~~~~~v~w 220 (952)
..|+.||+++.|...--|......+.+..++..+.+. |+.|.|.....|
T Consensus 24 ~EFQeLgF~v~~~~~eg~~ae~~dea~drFidevI~~Ngl~~~G~~~~~~ 73 (119)
T COG3171 24 GEFQELGFSVQWSFHEGTSAEDVDEAVDRFIDEVIAPNGLAFAGSGYLDW 73 (119)
T ss_pred HHHHhhheeeEEEecCCccHHHHHHHHHHHHHHHHccCceeEcCCcceee
Confidence 4788999999998887888888888888888888886 999999876666
No 173
>COG5270 PUA domain (predicted RNA-binding domain) [Translation, ribosomal structure and biogenesis]
Probab=41.53 E-value=15 Score=37.23 Aligned_cols=40 Identities=18% Similarity=0.253 Sum_probs=29.4
Q ss_pred HHCCceeeeccccccCCCCCcccCchhhccCccccCCCCeEEeec
Q 002217 206 LKRGLAYQAEVPVNWCPALGTVLANEEVVDGVSERGGHPVIRKPM 250 (952)
Q Consensus 206 ~~kGliy~~~~~v~wc~~~~t~ls~~Ev~~~~~~~~~~~~~~~~~ 250 (952)
.+++-.+.++.++|||..|.-+|-. ..|..||..+....+
T Consensus 2 ~kk~~~~~gk~~iyWCe~cNlPl~~-----~~c~~cg~~~~~l~L 41 (202)
T COG5270 2 RKKMPVVLGKFPIYWCEKCNLPLLG-----RRCSVCGSKVEELRL 41 (202)
T ss_pred CcccceeecccceeehhhCCCcccc-----ccccccCCcceEEEe
Confidence 4567788899999999999988654 357777765544433
No 174
>cd00671 ArgRS_core catalytic core domain of arginyl-tRNA synthetases. Arginyl tRNA synthetase (ArgRS) catalytic core domain. This class I enzyme is a monomer which aminoacylates the 2'-OH of the nucleotide at the 3' of the appropriate tRNA. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. There are at least three subgroups of ArgRS. One type contains both characteristic class I HIGH and KMSKS motifs, which are involved in ATP binding. The second subtype lacks the KMSKS motif; however, it has a lysine N-terminal to the HIGH motif, which serves as the functional counterpart to the second lysine of the KMSKS motif. A third group, which is found primarily in archaea and a few bacteria, lacks both the KMSKS motif and the HIGH loop lysine.
Probab=41.21 E-value=22 Score=37.46 Aligned_cols=15 Identities=33% Similarity=0.284 Sum_probs=10.1
Q ss_pred HHHHHHHHHHHcCCC
Q 002217 468 ATSKVIEWAEKTGNG 482 (952)
Q Consensus 468 a~~~ii~~l~~~~~~ 482 (952)
...++++.|.+.|..
T Consensus 97 ~~~~~i~~L~~~g~~ 111 (212)
T cd00671 97 LMGKVVELLEELGLL 111 (212)
T ss_pred HHHHHHHHHHHCCCE
Confidence 456677888877653
No 175
>PLN03233 putative glutamate-tRNA ligase; Provisional
Probab=41.15 E-value=28 Score=41.73 Aligned_cols=55 Identities=13% Similarity=0.118 Sum_probs=42.1
Q ss_pred ccccccccCC------CCCCC---------hhhHHhh-hCchhhhhhhhhcCCCCCCCCCChhhHHHHHHH
Q 002217 705 ARAHKMSKSR------GNVVN---------PDDVVTE-YGADSLRLYEMFMGPFRDSKTWNTSGIEGVHRF 759 (952)
Q Consensus 705 ~~g~KMSKSk------GNvV~---------P~eii~~-YGaDalRl~ll~~~~~~~~~~~s~~~i~~~~r~ 759 (952)
..|.||||++ .+.|+ ...+-.+ |-++|+|-|++..|....+...+.+.+..+.|.
T Consensus 242 ~~~~kLSKR~l~~lV~~g~v~GWDDPRlpTi~~lrrrG~~peAi~~f~~~~G~s~~~~~i~~~~l~~~nR~ 312 (523)
T PLN03233 242 FMNTVLSKRKLTWFVDNGHVTGWDDARFPTIRGISRRGIDIDALKMFMCSQGASRRVVNLDWAKFWAENKK 312 (523)
T ss_pred CCCCcccccCchhhhccCcccCccCCchHhHHHHHHCCCCHHHHHHHHHHhCCCCCCceecHHHHHHHHHH
Confidence 3588999998 45553 5555553 889999999999888877777787888776653
No 176
>KOG2145 consensus Cytoplasmic tryptophanyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=40.85 E-value=21 Score=38.73 Aligned_cols=30 Identities=23% Similarity=0.364 Sum_probs=23.2
Q ss_pred CCCCcEEEEcCCCCCCCCCCCCchhHHHHHH
Q 002217 91 TSKPKFYVLDMFPYPSGAGLHVGHPLGYTAT 121 (952)
Q Consensus 91 ~~k~kf~i~~~~Pypng~~lHiGH~~~~~~~ 121 (952)
+.+++||+..|-=+.++. +|+||+.-++..
T Consensus 81 eq~kpFyLYTGRGpSS~s-mHlGHliPFift 110 (397)
T KOG2145|consen 81 EQGKPFYLYTGRGPSSES-MHLGHLIPFIFT 110 (397)
T ss_pred HcCCceEEEeCCCCCccc-cccccchhHHHH
Confidence 356779999886667776 999999887543
No 177
>PRK12284 tryptophanyl-tRNA synthetase; Reviewed
Probab=40.73 E-value=73 Score=37.28 Aligned_cols=102 Identities=17% Similarity=0.187 Sum_probs=58.5
Q ss_pred EEcCCCCCCCCCCCCchhHHHHHHHHHHHHHHHcCCcccccccccccChHHHHHHHHhCCCchHHHHHHHHHHHHHHHHc
Q 002217 98 VLDMFPYPSGAGLHVGHPLGYTATDILARLKRMQGYNVLHPMGWDAFGLPAEQYAIETGTHPKITTLRNINRFRTQLKSL 177 (952)
Q Consensus 98 i~~~~Pypng~~lHiGH~~~~~~~Di~~Ry~r~~G~~V~~~~G~D~~Glpie~~a~~~g~~~~~~~~~~~~~~~~~l~~l 177 (952)
|++|+ -|+|. |||||..+.+-. ..+.+...|+++.+.. -|-|-+- ...+|.+ ..+++..+...+.+.
T Consensus 5 vlSGi-qPTG~-lHLGNylGaik~--~v~lq~q~~~~~~~~I-ADlHAlT-------~~~dp~~-lr~~~~e~aa~~LA~ 71 (431)
T PRK12284 5 VLTGI-TTTGT-PHLGNYAGAIRP--AIAASRQPGVESFYFL-ADYHALI-------KCDDPAR-IQRSTLEIAATWLAA 71 (431)
T ss_pred EEEEe-cCCCc-chHHHHHHHHHH--HHHHHHhCCCcEEEEe-echhhcc-------CCCCHHH-HHHHHHHHHHHHHHh
Confidence 34443 37898 999997775432 3444555688875443 3444431 1124443 334556678889999
Q ss_pred CCccccCCcccCC-ChhHHHHHHHHHHHHHHCCceee
Q 002217 178 GFSYDWNREISTI-EPAYYKWTQWIFLQLLKRGLAYQ 213 (952)
Q Consensus 178 gi~~Dw~~~~~T~-~~~~~~~v~~~f~~L~~kGliy~ 213 (952)
|+..+=...|.-+ -|++.+ ..|++..+-..|.+-|
T Consensus 72 GlDPek~~if~QSdvpeh~E-L~wiL~~it~~g~L~R 107 (431)
T PRK12284 72 GLDPERVTFYRQSDIPEIPE-LTWLLTCVAGKGLLNR 107 (431)
T ss_pred CCCccceEEEECCcchhHHH-HHHHHHhhhhHHHHHh
Confidence 9965522233333 466544 5777776666655443
No 178
>KOG1149 consensus Glutamyl-tRNA synthetase (mitochondrial) [Translation, ribosomal structure and biogenesis]
Probab=39.88 E-value=52 Score=38.02 Aligned_cols=92 Identities=23% Similarity=0.235 Sum_probs=52.8
Q ss_pred CCCCCCCCCCCchhHHHHHHHHHHHHHHHcCCcccccccccccChHHHHHHHHhCCCchHHHHHHHHHHHHHHHHcCCcc
Q 002217 102 FPYPSGAGLHVGHPLGYTATDILARLKRMQGYNVLHPMGWDAFGLPAEQYAIETGTHPKITTLRNINRFRTQLKSLGFSY 181 (952)
Q Consensus 102 ~Pypng~~lHiGH~~~~~~~Di~~Ry~r~~G~~V~~~~G~D~~Glpie~~a~~~g~~~~~~~~~~~~~~~~~l~~lgi~~ 181 (952)
-|-|+|- ||+|-+|+.+.-=++|| ...|.-++.+=-+|- +..+....+.+.+.|+-+|+..
T Consensus 39 APSPTGf-LHlGgLRTALfNYLfAr--k~gGkFiLRiEDTDq----------------~R~v~gs~e~i~~~L~w~nl~~ 99 (524)
T KOG1149|consen 39 APSPTGF-LHLGGLRTALFNYLFAR--KKGGKFILRIEDTDQ----------------KRLIRGSEEAIYEDLKWANLDW 99 (524)
T ss_pred cCCCCcc-eehhhHHHHHHHHHHHH--hcCCeEEEEeccccc----------------cccccchHHHHHHHHHhcCCCc
Confidence 4889998 99999998655544443 345555554433331 1122233456677889999954
Q ss_pred ccCCcc-cC--CCh----hHHHHHHHHHHHHHHCCceeee
Q 002217 182 DWNREI-ST--IEP----AYYKWTQWIFLQLLKRGLAYQA 214 (952)
Q Consensus 182 Dw~~~~-~T--~~~----~~~~~v~~~f~~L~~kGliy~~ 214 (952)
| .-= .- ..| +-.+.-+....+|.+.|.+|+-
T Consensus 100 D--EgP~~gG~~GPY~QS~R~eiY~kyae~Ll~sG~AYrC 137 (524)
T KOG1149|consen 100 D--EGPGVGGPFGPYEQSERLEIYKKYAEKLLESGHAYRC 137 (524)
T ss_pred c--cCCCcCCCCCchhhHHHHHHHHHHHHHHHhcCCeeEe
Confidence 4 421 11 111 1122234455678889999883
No 179
>cd00807 GlnRS_core catalytic core domain of glutaminyl-tRNA synthetase. Glutaminyl-tRNA synthetase (GlnRS) cataytic core domain. These enzymes attach Gln to the appropriate tRNA. Like other class I tRNA synthetases, they aminoacylate the 2'-OH of the nucleotide at the 3' end of the tRNA. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. GlnRS contains the characteristic class I HIGH and KMSKS motifs, which are involved in ATP binding. These enzymes function as monomers. Archaea and most bacteria lack GlnRS. In these organisms, the "non-discriminating" form of GluRS aminoacylates both tRNA(Glu) and tRNA(Gln) with Glu, which is converted to Gln when appropriate by a transamidation enzyme.
Probab=38.01 E-value=40 Score=36.21 Aligned_cols=54 Identities=19% Similarity=0.200 Sum_probs=35.8
Q ss_pred ccccccccCCCC------CC----Ch-----hhHHh-hhCchhhhhhhhhcCCCCCCCCCChhhHHHHHH
Q 002217 705 ARAHKMSKSRGN------VV----NP-----DDVVT-EYGADSLRLYEMFMGPFRDSKTWNTSGIEGVHR 758 (952)
Q Consensus 705 ~~g~KMSKSkGN------vV----~P-----~eii~-~YGaDalRl~ll~~~~~~~~~~~s~~~i~~~~r 758 (952)
.+|+||||+.+- .+ +| ..+.. .|-+++++=|++..|....+..++.+.+....|
T Consensus 160 ~~g~kLSKR~~~~~i~~g~~~~wddpr~~~~~~l~~~G~~peal~~~l~~lG~s~~~~~~~~~~l~~~nr 229 (238)
T cd00807 160 LTYTVMSKRKLLQLVDEGYVDGWDDPRLPTLRGLRRRGVTPEAIRQFILRQGVSKADSTIDWDKLEACVR 229 (238)
T ss_pred CCCCCccCcCchhccccCCcccccCcchHHHHHHHHcCCCHHHHHHHHHHhCCCCCCcccCHHHHHHHHH
Confidence 358999999952 22 12 22222 377899999998888777777777776665443
No 180
>PRK01406 gltX glutamyl-tRNA synthetase; Reviewed
Probab=36.42 E-value=34 Score=40.79 Aligned_cols=34 Identities=24% Similarity=0.383 Sum_probs=28.2
Q ss_pred cccccccCCCCCCChhhHHhh-hCchhhhhhhhhcC
Q 002217 706 RAHKMSKSRGNVVNPDDVVTE-YGADSLRLYEMFMG 740 (952)
Q Consensus 706 ~g~KMSKSkGNvV~P~eii~~-YGaDalRl~ll~~~ 740 (952)
+|.||||.+| .++..++++. |-+.+++-|++..|
T Consensus 248 ~g~klSKR~g-~~~l~~l~~~G~~p~Ai~n~l~~lG 282 (476)
T PRK01406 248 DGKKLSKRHG-ATSVEQYRDMGYLPEALLNYLALLG 282 (476)
T ss_pred CCCcccCcCC-ccCHHHHHHCCCCHHHHHHHHHHhC
Confidence 3799999999 7899999986 67888888887654
No 181
>PTZ00126 tyrosyl-tRNA synthetase; Provisional
Probab=35.73 E-value=56 Score=37.81 Aligned_cols=77 Identities=21% Similarity=0.251 Sum_probs=41.4
Q ss_pred cEEEEcCCCCCCCCCCCCchhHHHHHHHHHHHHHHHcCCcccccccccccChHHHHHHHHhCCCchHHHHHHHHHHHHHH
Q 002217 95 KFYVLDMFPYPSGAGLHVGHPLGYTATDILARLKRMQGYNVLHPMGWDAFGLPAEQYAIETGTHPKITTLRNINRFRTQL 174 (952)
Q Consensus 95 kf~i~~~~Pypng~~lHiGH~~~~~~~Di~~Ry~r~~G~~V~~~~G~D~~Glpie~~a~~~g~~~~~~~~~~~~~~~~~l 174 (952)
++.++.|+ =|+|. +||||.. +..--+.+++ -.|++|.+..+ |-|.+-. .+.|.++.+ .......+...+
T Consensus 66 ~~~v~~G~-~PTG~-lHLG~g~--i~~~~~~~lq-~~G~~v~~~Ia-D~hA~~~----~~~g~~l~~-i~~~~~~~~~~~ 134 (383)
T PTZ00126 66 RPICYDGF-EPSGR-MHIAQGI--LKAINVNKLT-KAGCVFVFWVA-DWFALLN----NKMGGDLEK-IRKVGEYFIEVW 134 (383)
T ss_pred CCEEEEEE-CCCCc-ccccchH--hHhHHHHHHH-hCCCeEEEEEc-cceeecC----CCCCCCHHH-HHHHHHHHHHHH
Confidence 34455554 37887 9999932 1111233343 44888866554 3333211 122333333 345566677789
Q ss_pred HHcCCccc
Q 002217 175 KSLGFSYD 182 (952)
Q Consensus 175 ~~lgi~~D 182 (952)
.++|+..+
T Consensus 135 ~A~GlDp~ 142 (383)
T PTZ00126 135 KAAGMDMD 142 (383)
T ss_pred HHhCCCcc
Confidence 99998544
No 182
>PRK12410 glutamylglutaminyl-tRNA synthetase; Provisional
Probab=35.66 E-value=70 Score=37.57 Aligned_cols=35 Identities=17% Similarity=0.286 Sum_probs=27.0
Q ss_pred cccccccCCCCCCChhhHHh-hhCchhhhhhhhhcCC
Q 002217 706 RAHKMSKSRGNVVNPDDVVT-EYGADSLRLYEMFMGP 741 (952)
Q Consensus 706 ~g~KMSKSkGNvV~P~eii~-~YGaDalRl~ll~~~~ 741 (952)
+|+||||+.|.. +..++.+ .|-+++++=|++..+-
T Consensus 232 ~g~KLSKR~~~~-~v~~~r~~G~~PeAi~n~l~~lG~ 267 (433)
T PRK12410 232 EGKKMSKRDNAS-SVKWLLEQGFLPSAIANYLILLGN 267 (433)
T ss_pred CCCeeecccChh-hHHHHHHCCCCHHHHHHHHHHhCC
Confidence 379999999863 5666655 4889999999887663
No 183
>TIGR00440 glnS glutaminyl-tRNA synthetase. This protein is a relatively rare aminoacyl-tRNA synthetase, found in the cytosolic compartment of eukaryotes, in E. coli and a number of other Gram-negative Bacteria, and in Deinococcus radiodurans. In contrast, the pathway to Gln-tRNA in mitochondria, Archaea, Gram-positive Bacteria, and a number of other lineages is by misacylation with Glu followed by transamidation to correct the aminoacylation to Gln. This enzyme is a class I tRNA synthetase (hit by the pfam model tRNA-synt_1c) and is quite closely related to glutamyl-tRNA synthetases.
Probab=35.39 E-value=34 Score=41.03 Aligned_cols=53 Identities=13% Similarity=0.129 Sum_probs=35.6
Q ss_pred ccccccccCCCCC---------------CChhhHHh-hhCchhhhhhhhhcCCCCCCCCCChhhHHHHH
Q 002217 705 ARAHKMSKSRGNV---------------VNPDDVVT-EYGADSLRLYEMFMGPFRDSKTWNTSGIEGVH 757 (952)
Q Consensus 705 ~~g~KMSKSkGNv---------------V~P~eii~-~YGaDalRl~ll~~~~~~~~~~~s~~~i~~~~ 757 (952)
.+|.||||+++.. .+...+.+ .|-++|+|=|++..|....+...+...++...
T Consensus 237 ~~~~kLSKRk~~~~V~~g~v~GWdDPRl~Ti~~lrrrG~~PeAi~nfl~~lG~s~~~~~~e~~~l~~~~ 305 (522)
T TIGR00440 237 LEGTVLSKRKLAQLVDDKFVRGWDDPRMPTISGLRRRGYTPASIREFCNRIGVTKQDNNIEVVRLESCI 305 (522)
T ss_pred CCCCCcccccchhccccCcccCCCCCccccHHHHHHCCCCHHHHHHHHHHhCCCCCCCceehhhHHHHH
Confidence 4589999999875 35566665 38999999999988765443322334454443
No 184
>PRK05347 glutaminyl-tRNA synthetase; Provisional
Probab=33.57 E-value=41 Score=40.58 Aligned_cols=55 Identities=20% Similarity=0.181 Sum_probs=41.1
Q ss_pred ccccccccCCCC------CC---------ChhhHHhh-hCchhhhhhhhhcCCCCCCCCCChhhHHHHHHH
Q 002217 705 ARAHKMSKSRGN------VV---------NPDDVVTE-YGADSLRLYEMFMGPFRDSKTWNTSGIEGVHRF 759 (952)
Q Consensus 705 ~~g~KMSKSkGN------vV---------~P~eii~~-YGaDalRl~ll~~~~~~~~~~~s~~~i~~~~r~ 759 (952)
..|.||||+++. .| +...+.++ |-++|+|=|++..|....+..++.+.+....|.
T Consensus 266 ~~~~~LSKRkl~~lV~~g~v~GWDDPRl~Ti~~lrrrG~~PeAi~nf~~~lG~s~~~~~i~~~~L~~~nRk 336 (554)
T PRK05347 266 LTYTVMSKRKLKQLVEEKHVDGWDDPRMPTISGLRRRGYTPESIREFCERIGVTKQDSVIDMSMLESCIRE 336 (554)
T ss_pred CCCCccccccchhccccCcccCccCCcchhHHHHHHCCCCHHHHHHHHHHhCCCCCCCeecHHHHHHHHHH
Confidence 358999999965 22 45566554 999999999998887777766777777776653
No 185
>PRK12556 tryptophanyl-tRNA synthetase; Provisional
Probab=32.66 E-value=77 Score=35.95 Aligned_cols=23 Identities=17% Similarity=0.031 Sum_probs=15.8
Q ss_pred CCceeEecCchhhHHHHHHHHHHH
Q 002217 601 SPVDVYVGGAEHAVLHLLYARFWH 624 (952)
Q Consensus 601 ~PvDlyv~G~D~~~~HLly~Rfw~ 624 (952)
|.+|+...|.||.. |+-.+|-..
T Consensus 148 ~~~d~VpvG~DQ~q-hleLtRdiA 170 (332)
T PRK12556 148 FQATHVPVGKDQIQ-HIEIARDIA 170 (332)
T ss_pred ccCCEEEeccccHH-HHHHHHHHH
Confidence 45788889999964 544466653
No 186
>PRK14895 gltX glutamyl-tRNA synthetase; Provisional
Probab=32.14 E-value=48 Score=39.71 Aligned_cols=34 Identities=26% Similarity=0.367 Sum_probs=25.5
Q ss_pred cccccccCCCCCCChhhHHh-hhCchhhhhhhhhcC
Q 002217 706 RAHKMSKSRGNVVNPDDVVT-EYGADSLRLYEMFMG 740 (952)
Q Consensus 706 ~g~KMSKSkGNvV~P~eii~-~YGaDalRl~ll~~~ 740 (952)
+|.||||..|.. ...++.+ .|-+.+++=|++..|
T Consensus 237 ~g~KLSKR~g~~-~i~~~r~~G~~Peai~n~la~LG 271 (513)
T PRK14895 237 DGAKLSKRHGAL-GIEAYKDMGYLPESLCNYLLRLG 271 (513)
T ss_pred CCCccccccCch-hHHHHHHCCCCHHHHHHHHHHhC
Confidence 379999999885 4555554 488899998888554
No 187
>TIGR00234 tyrS tyrosyl-tRNA synthetase. This tyrosyl-tRNA synthetase model starts picking up tryptophanyl-tRNA synthetases at scores of 0 and below. The proteins found by this model have a deep split between two groups. One group contains bacterial and organellar eukaryotic examples. The other contains archaeal and cytosolic eukaryotic examples.
Probab=31.29 E-value=61 Score=37.47 Aligned_cols=15 Identities=47% Similarity=0.601 Sum_probs=12.4
Q ss_pred ccccccCCCCCCChh
Q 002217 707 AHKMSKSRGNVVNPD 721 (952)
Q Consensus 707 g~KMSKSkGNvV~P~ 721 (952)
|+|||||.||.|+..
T Consensus 219 g~KmgKS~~~~i~l~ 233 (377)
T TIGR00234 219 GEKMGKSGGGAVSLD 233 (377)
T ss_pred CCCccCCCCCcccCC
Confidence 799999999987643
No 188
>PF09190 DALR_2: DALR domain; InterPro: IPR015273 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. This DALR domain is found in cysteinyl-tRNA-synthetases []. ; GO: 0000166 nucleotide binding, 0004817 cysteine-tRNA ligase activity, 0005524 ATP binding, 0006423 cysteinyl-tRNA aminoacylation, 0005737 cytoplasm; PDB: 1LI5_B 1LI7_B 1U0B_B 3TQO_A.
Probab=31.03 E-value=63 Score=26.87 Aligned_cols=27 Identities=11% Similarity=0.319 Sum_probs=22.5
Q ss_pred HHHHHHh-cCChHHHHHHHHHHHHHHhc
Q 002217 802 KVTEEIE-GTRFNTGISAMMEFINAAYK 828 (952)
Q Consensus 802 ~v~~~~e-~~~f~~ai~~l~~f~~~~~~ 828 (952)
++.++|+ +++...|++.|++++..+|+
T Consensus 1 ~F~~AmdDDfNT~~Ala~lf~l~~~~N~ 28 (63)
T PF09190_consen 1 EFIEAMDDDFNTPEALAALFELVKEINR 28 (63)
T ss_dssp HHHHHHCBTS-HHHHHHHHHHHHHHHHH
T ss_pred ChHHHHhHhcCcHHHHHHHHHHHHHHHH
Confidence 3678885 59999999999999998887
No 189
>PRK12558 glutamyl-tRNA synthetase; Provisional
Probab=28.22 E-value=83 Score=37.14 Aligned_cols=34 Identities=12% Similarity=0.114 Sum_probs=27.2
Q ss_pred cccccccCCCCCCChhhHHh-hhCchhhhhhhhhcC
Q 002217 706 RAHKMSKSRGNVVNPDDVVT-EYGADSLRLYEMFMG 740 (952)
Q Consensus 706 ~g~KMSKSkGNvV~P~eii~-~YGaDalRl~ll~~~ 740 (952)
+|.||||..|. ++..++.+ .|-+++++=|++..+
T Consensus 237 ~g~KLSKR~g~-~sv~~~r~~G~~Peai~n~la~lG 271 (445)
T PRK12558 237 DGKGLSKRLGG-LSIRSLREDGIEPMAIASLLARLG 271 (445)
T ss_pred CcccccccCCC-cCHHHHHHCCCCHHHHHHHHHHHc
Confidence 37999999876 56777666 499999999988765
No 190
>PRK12283 tryptophanyl-tRNA synthetase; Reviewed
Probab=27.94 E-value=91 Score=36.15 Aligned_cols=90 Identities=18% Similarity=0.186 Sum_probs=49.2
Q ss_pred EEcCCCCCCCCCCCCchhHHHHHHHHHHHHHH-HcCCcccccccccccChHHHHHHHHhCCCchHHHHHHHHHHHHHHHH
Q 002217 98 VLDMFPYPSGAGLHVGHPLGYTATDILARLKR-MQGYNVLHPMGWDAFGLPAEQYAIETGTHPKITTLRNINRFRTQLKS 176 (952)
Q Consensus 98 i~~~~Pypng~~lHiGH~~~~~~~Di~~Ry~r-~~G~~V~~~~G~D~~Glpie~~a~~~g~~~~~~~~~~~~~~~~~l~~ 176 (952)
|++|+ -|+|. +||||.++.+ + .|.. ..|+++. .+=.|-|-+-. ...++ +...++...+...+.+
T Consensus 5 v~sGi-qPSG~-~HLGnylG~i-k----~wv~lq~~~~~~-~~IADlHAlt~------~~~d~-~~ir~~~~~~~a~~lA 69 (398)
T PRK12283 5 VLSGM-RPTGR-LHLGHYHGVL-K----NWVKLQHEYECF-FFVADWHALTT------HYETP-EVIEKNVWDMVIDWLA 69 (398)
T ss_pred EEEEe-CCCCc-chHHHHHHHH-H----HHHHHhcCCcEE-EEeecHHHHhC------CCCCH-HHHHHHHHHHHHHHHH
Confidence 34443 37897 9999999843 2 3333 3577654 33344443311 11133 3455666778889999
Q ss_pred cCCccccCCcccC-CChhHHHHHHHHHH
Q 002217 177 LGFSYDWNREIST-IEPAYYKWTQWIFL 203 (952)
Q Consensus 177 lgi~~Dw~~~~~T-~~~~~~~~v~~~f~ 203 (952)
+|+..+=...+.- .-|+|.+ ..|++.
T Consensus 70 ~GlDP~k~~if~QS~v~eh~e-L~wil~ 96 (398)
T PRK12283 70 AGVDPAQATLFIQSKVPEHAE-LHLLLS 96 (398)
T ss_pred cCCCccceEEEECCCchHHHH-HHHHHH
Confidence 9997663233333 3355533 334443
No 191
>PTZ00437 glutaminyl-tRNA synthetase; Provisional
Probab=27.31 E-value=45 Score=40.31 Aligned_cols=56 Identities=20% Similarity=0.226 Sum_probs=42.1
Q ss_pred hcccccccccCCCCC---------------CChhhHHhh-hCchhhhhhhhhcCCCCCCCCCChhhHHHHHH
Q 002217 703 LIARAHKMSKSRGNV---------------VNPDDVVTE-YGADSLRLYEMFMGPFRDSKTWNTSGIEGVHR 758 (952)
Q Consensus 703 v~~~g~KMSKSkGNv---------------V~P~eii~~-YGaDalRl~ll~~~~~~~~~~~s~~~i~~~~r 758 (952)
+...+.||||++... .+...+..+ |-++|+|=|++..|....+...+.+.++.+.|
T Consensus 280 ln~~~~~LSKRkl~~lV~~g~V~GWDDPRl~Ti~glrrrG~~peAi~~f~~~~G~sk~~~~i~~~~Le~~nR 351 (574)
T PTZ00437 280 LNVTGSLLSKRKINVLVRKGIVRGFDDPRLLTLAGMRRRGYTPAAINRFCELVGITRSMNVIQISMLENTLR 351 (574)
T ss_pred ecCCCceeeccchHHhcccCccCCCCCCcchhHHHHHHCCCCHHHHHHHHHHhCCCccceEeeHHHHHHHHH
Confidence 334589999999874 244444443 89999999999888877777777788877665
No 192
>PLN02627 glutamyl-tRNA synthetase
Probab=25.35 E-value=1e+02 Score=37.17 Aligned_cols=33 Identities=24% Similarity=0.381 Sum_probs=26.1
Q ss_pred ccccccCCCCCCChhhHHh-hhCchhhhhhhhhcC
Q 002217 707 AHKMSKSRGNVVNPDDVVT-EYGADSLRLYEMFMG 740 (952)
Q Consensus 707 g~KMSKSkGNvV~P~eii~-~YGaDalRl~ll~~~ 740 (952)
|+||||..|. ++..++.+ .|-+++++=|++..+
T Consensus 291 g~KLSKR~~~-~~v~~~r~~G~~PeAi~nyla~LG 324 (535)
T PLN02627 291 RSKLSKRHGA-TSVGQFREMGYLPDAMVNYLALLG 324 (535)
T ss_pred CCccccccCC-ccHHHHHHCCCCHHHHHHHHHHhC
Confidence 7999999865 46666666 488899998888766
No 193
>TIGR00373 conserved hypothetical protein TIGR00373. This family of proteins is, so far, restricted to archaeal genomes. The family appears to be distantly related to the N-terminal region of the eukaryotic transcription initiation factor IIE alpha chain.
Probab=24.43 E-value=53 Score=32.99 Aligned_cols=96 Identities=14% Similarity=0.177 Sum_probs=56.7
Q ss_pred hHHHHHHHHhCCCchHHHHHHHHHHHHHHHHcCCcc---------ccCCcccCCCh-hHHHHHHHHHHHHH---HCCcee
Q 002217 146 LPAEQYAIETGTHPKITTLRNINRFRTQLKSLGFSY---------DWNREISTIEP-AYYKWTQWIFLQLL---KRGLAY 212 (952)
Q Consensus 146 lpie~~a~~~g~~~~~~~~~~~~~~~~~l~~lgi~~---------Dw~~~~~T~~~-~~~~~v~~~f~~L~---~kGliy 212 (952)
+..|..|...|++..+ +.+....|...|+.. -|-.++++.++ .-...+.+-+.++. ++-+-+
T Consensus 29 ~tdEeLa~~Lgi~~~~-----VRk~L~~L~e~~Lv~~~r~r~~~~gw~~Y~w~i~~~~i~d~Ik~~~~~~~~~lk~~l~~ 103 (158)
T TIGR00373 29 FTDEEISLELGIKLNE-----VRKALYALYDAGLADYKRRKDDETGWYEYTWRINYEKALDVLKRKLEETAKKLREKLEF 103 (158)
T ss_pred CCHHHHHHHHCCCHHH-----HHHHHHHHHHCCCceeeeeeecCCCcEEEEEEeCHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 3445566667765443 233333444444421 24344444443 23334444444333 355666
Q ss_pred eeccccccCCCCCcccCchhhcc--CccccCCCCeE
Q 002217 213 QAEVPVNWCPALGTVLANEEVVD--GVSERGGHPVI 246 (952)
Q Consensus 213 ~~~~~v~wc~~~~t~ls~~Ev~~--~~~~~~~~~~~ 246 (952)
......|.||.|+.-++..|..+ -.|..||.+.+
T Consensus 104 e~~~~~Y~Cp~c~~r~tf~eA~~~~F~Cp~Cg~~L~ 139 (158)
T TIGR00373 104 ETNNMFFICPNMCVRFTFNEAMELNFTCPRCGAMLD 139 (158)
T ss_pred ccCCCeEECCCCCcEeeHHHHHHcCCcCCCCCCEee
Confidence 67777888999999999988863 47999999764
No 194
>cd09287 GluRS_non_core catalytic core domain of non-discriminating glutamyl-tRNA synthetase. Non-discriminating Glutamyl-tRNA synthetase (GluRS) cataytic core domain. These enzymes attach Glu to the appropriate tRNA. Like other class I tRNA synthetases, they aminoacylate the 2'-OH of the nucleotide at the 3' end of the tRNA. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. It contains the characteristic class I HIGH and KMSKS motifs, which are involved in ATP binding. These enzymes function as monomers. Archaea and most bacteria lack GlnRS. In these organisms, the "non-discriminating" form of GluRS aminoacylates both tRNA(Glu) and tRNA(Gln) with Glu, which is converted to Gln when appropriate by a transamidation enzyme.
Probab=24.25 E-value=75 Score=34.27 Aligned_cols=53 Identities=13% Similarity=0.139 Sum_probs=33.3
Q ss_pred cccccccCCCC------CC---------ChhhHHh-hhCchhhhhhhhhcCCCCCCCCCChhhHHHHHH
Q 002217 706 RAHKMSKSRGN------VV---------NPDDVVT-EYGADSLRLYEMFMGPFRDSKTWNTSGIEGVHR 758 (952)
Q Consensus 706 ~g~KMSKSkGN------vV---------~P~eii~-~YGaDalRl~ll~~~~~~~~~~~s~~~i~~~~r 758 (952)
+|+||||+++- .| +...+.+ .|-+++++-|++..|-...+..++.+.+....|
T Consensus 163 ~~~kLSKR~~~~~i~~~~~~~w~dp~~~~~~~lr~~G~~p~ai~~~~~~lG~s~~~~~~~~~~l~~~~r 231 (240)
T cd09287 163 EGGKLSTSKIRKGIESGEYEGWDDPRLPTLRALRRRGIRPEAIRDFIIEVGVKQTDATISWENLYAINR 231 (240)
T ss_pred CCCeeccccccccccccccccccCcchHHHHHHHHCCCCHHHHHHHHHHhCCCCCCCccCHHHHHHHHH
Confidence 47999999842 22 2222222 377888988888777666665666666655443
No 195
>PRK00448 polC DNA polymerase III PolC; Validated
Probab=22.98 E-value=80 Score=42.73 Aligned_cols=27 Identities=11% Similarity=0.244 Sum_probs=19.1
Q ss_pred cccccCCCCCccccCCCccccccccchhheecCCC
Q 002217 552 QTTEHSSGKPARRETSTMPQWAGSCWYYLRFMDPK 586 (952)
Q Consensus 552 ~~~~~~~g~~~~re~d~lD~WfdSswy~~~~~~p~ 586 (952)
+..||.||.++.++-.-+ .|-||+.|.
T Consensus 933 dk~Cp~Cg~~~~kdg~~l--------~FErFL~~~ 959 (1437)
T PRK00448 933 DKDCPKCGTKLKKDGHDI--------PFETFLGFK 959 (1437)
T ss_pred cccCccccccccccCCCc--------eeeeccCCC
Confidence 467999999988765433 466777665
No 196
>cd06545 GH18_3CO4_chitinase The Bacteroides thetaiotaomicron protein represented by pdb structure 3CO4 is an uncharacterized bacterial member of the family 18 glycosyl hydrolases with homologs found in Flavobacterium, Stigmatella, and Pseudomonas.
Probab=22.36 E-value=2.2e+02 Score=30.75 Aligned_cols=99 Identities=13% Similarity=0.126 Sum_probs=53.4
Q ss_pred CCCCCCCCCCchhHHHHHHHHHHHHHHHcCCcccccccccccChHHHHHHHHhCCCchHHHHHHHHHHHHHHHHc---CC
Q 002217 103 PYPSGAGLHVGHPLGYTATDILARLKRMQGYNVLHPMGWDAFGLPAEQYAIETGTHPKITTLRNINRFRTQLKSL---GF 179 (952)
Q Consensus 103 Pypng~~lHiGH~~~~~~~Di~~Ry~r~~G~~V~~~~G~D~~Glpie~~a~~~g~~~~~~~~~~~~~~~~~l~~l---gi 179 (952)
+.++|. +++.+-... +. .+.+..+..|-+|+...|-...+.... +.. + .+...+.++...+.+++. ||
T Consensus 33 i~~~G~-l~~~~~~~~-~~-~~~~~~~~~~~kvl~sigg~~~~~~~~--~~~---~-~~~r~~fi~~lv~~~~~~~~DGI 103 (253)
T cd06545 33 PDANGT-LNANPVRSE-LN-SVVNAAHAHNVKILISLAGGSPPEFTA--ALN---D-PAKRKALVDKIINYVVSYNLDGI 103 (253)
T ss_pred ECCCCe-EEecCcHHH-HH-HHHHHHHhCCCEEEEEEcCCCCCcchh--hhc---C-HHHHHHHHHHHHHHHHHhCCCce
Confidence 456776 777532211 12 223344557888886665443332111 110 1 112233444444455554 88
Q ss_pred ccccCCcccCCChhHHHHHHHHHHHHHHCCce
Q 002217 180 SYDWNREISTIEPAYYKWTQWIFLQLLKRGLA 211 (952)
Q Consensus 180 ~~Dw~~~~~T~~~~~~~~v~~~f~~L~~kGli 211 (952)
.+||+....+ ...|..+++++-..|.+.|++
T Consensus 104 diDwE~~~~~-~~~~~~fv~~Lr~~l~~~~~~ 134 (253)
T cd06545 104 DVDLEGPDVT-FGDYLVFIRALYAALKKEGKL 134 (253)
T ss_pred eEEeeccCcc-HhHHHHHHHHHHHHHhhcCcE
Confidence 9999876543 457778888887777766653
No 197
>PLN02859 glutamine-tRNA ligase
Probab=21.98 E-value=61 Score=40.67 Aligned_cols=51 Identities=14% Similarity=0.094 Sum_probs=36.3
Q ss_pred ccccccccCCCCC---------------CChhhHHh-hhCchhhhhhhhhcCCCCCCC-CCChhhHHH
Q 002217 705 ARAHKMSKSRGNV---------------VNPDDVVT-EYGADSLRLYEMFMGPFRDSK-TWNTSGIEG 755 (952)
Q Consensus 705 ~~g~KMSKSkGNv---------------V~P~eii~-~YGaDalRl~ll~~~~~~~~~-~~s~~~i~~ 755 (952)
..|.||||+++.. .+...+.+ .|-++|+|-|++..|....+. .++.+.++.
T Consensus 495 ~~~t~LSKRkl~~lV~~g~V~GWDDPRl~Tl~glRrrG~~PeAi~nFi~~lG~s~~~~e~i~~~~Le~ 562 (788)
T PLN02859 495 VTNTVMSKRKLNRLVTEKYVDGWDDPRLLTLAGLRRRGVTPTAINAFCRGIGITRSDNSLIRMDRLEH 562 (788)
T ss_pred CCCCcccCcCchhccccCcccCCCCCcchhHHHHHHCCCCHHHHHHHHHHhCCCCCCCceecHHHHHh
Confidence 4589999999775 24445555 488999999999887665554 566666643
No 198
>PF00579 tRNA-synt_1b: tRNA synthetases class I (W and Y); InterPro: IPR002305 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. The class Ia aminoacyl-tRNA synthetases consist of the isoleucyl, methionyl, valyl, leucyl, cysteinyl, and arginyl-tRNA synthetases; the class Ib include the glutamyl and glutaminyl-tRNA synthetases, and the class Ic are the tyrosyl and tryptophanyl-tRNA synthetases [].; GO: 0000166 nucleotide binding, 0004812 aminoacyl-tRNA ligase activity, 0005524 ATP binding, 0006418 tRNA aminoacylation for protein translation, 0005737 cytoplasm; PDB: 2JAN_A 3P0J_B 3P0I_B 3P0H_B 1YID_C 2A4M_C 1YIA_C 1YI8_C 2EL7_A 3PRH_A ....
Probab=21.78 E-value=1.5e+02 Score=32.75 Aligned_cols=24 Identities=25% Similarity=0.308 Sum_probs=16.1
Q ss_pred CCceeEecCchhhHHHHHHHHHHHH
Q 002217 601 SPVDVYVGGAEHAVLHLLYARFWHK 625 (952)
Q Consensus 601 ~PvDlyv~G~D~~~~HLly~Rfw~~ 625 (952)
+-+|+.++|.||. .|+..+|-...
T Consensus 148 l~~~~~~~G~DQ~-~~~~l~rd~a~ 171 (292)
T PF00579_consen 148 LKADLVPGGIDQR-GHIELARDLAR 171 (292)
T ss_dssp TTHSEEEEEGGGH-HHHHHHHHHHH
T ss_pred eccccccccchHH-HHHHHHHHHHh
Confidence 4578999999996 34444555533
No 199
>PLN02486 aminoacyl-tRNA ligase
Probab=21.62 E-value=38 Score=39.17 Aligned_cols=25 Identities=24% Similarity=0.163 Sum_probs=16.7
Q ss_pred cccccCCCC-CCChhhHHhhhCchhhhhhhh
Q 002217 708 HKMSKSRGN-VVNPDDVVTEYGADSLRLYEM 737 (952)
Q Consensus 708 ~KMSKSkGN-vV~P~eii~~YGaDalRl~ll 737 (952)
.|||||.+| .|...| .++.++=.+.
T Consensus 264 ~KMSkS~~nsaI~L~D-----~p~~i~~KI~ 289 (383)
T PLN02486 264 GKMSASDPNSAIYVTD-----TPKEIKNKIN 289 (383)
T ss_pred CcCcCcCCCCeeeccC-----CHHHHHHHHh
Confidence 699999988 576655 4444444443
No 200
>smart00531 TFIIE Transcription initiation factor IIE.
Probab=20.08 E-value=70 Score=31.65 Aligned_cols=65 Identities=15% Similarity=0.164 Sum_probs=43.9
Q ss_pred cCCcccCCCh-hHHHHHHHHHHHH---HHCCceeeeccccccCCCCCcccCchhhcc-------CccccCCCCeEE
Q 002217 183 WNREISTIEP-AYYKWTQWIFLQL---LKRGLAYQAEVPVNWCPALGTVLANEEVVD-------GVSERGGHPVIR 247 (952)
Q Consensus 183 w~~~~~T~~~-~~~~~v~~~f~~L---~~kGliy~~~~~v~wc~~~~t~ls~~Ev~~-------~~~~~~~~~~~~ 247 (952)
|-..|+..+. .....+.+-..++ .++-+-+......+.||.|+...+..|... -.|+.||.+++.
T Consensus 60 ~~~~yw~i~y~~~~~vik~r~~~~~~~L~~~l~~e~~~~~Y~Cp~C~~~y~~~ea~~~~d~~~~f~Cp~Cg~~l~~ 135 (147)
T smart00531 60 WYRYYWYINYDTLLDVVKYKLDKMRKRLEDKLEDETNNAYYKCPNCQSKYTFLEANQLLDMDGTFTCPRCGEELEE 135 (147)
T ss_pred EEEEEEEecHHHHHHHHHHHHHHHHHHHHHHHhcccCCcEEECcCCCCEeeHHHHHHhcCCCCcEECCCCCCEEEE
Confidence 5555666663 3344555555444 456677777888999999999988777642 358889887643
Done!