Query 002217
Match_columns 952
No_of_seqs 344 out of 2999
Neff 7.5
Searched_HMMs 29240
Date Mon Mar 25 17:22:44 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/002217.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/002217hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4arc_A Leucine--tRNA ligase; l 100.0 5E-188 2E-192 1716.1 69.9 848 60-943 21-880 (880)
2 2v0c_A Aminoacyl-tRNA syntheta 100.0 1E-179 5E-184 1655.8 57.4 858 63-943 3-877 (878)
3 1gax_A Valrs, valyl-tRNA synth 100.0 5E-128 2E-132 1189.1 46.8 610 60-874 3-709 (862)
4 1ffy_A Isoleucyl-tRNA syntheta 100.0 5E-130 2E-134 1217.8 22.2 684 59-893 13-808 (917)
5 1ile_A Ilers, isoleucyl-tRNA s 100.0 5E-128 2E-132 1197.0 36.3 669 62-879 6-795 (821)
6 1wz2_A Leucyl-tRNA synthetase; 100.0 1E-115 4E-120 1099.0 36.1 669 62-879 2-829 (967)
7 1wkb_A Leucyl-tRNA synthetase; 100.0 1E-108 5E-113 1024.4 40.5 650 62-860 2-810 (810)
8 3u1f_A Methionyl-tRNA syntheta 100.0 2.4E-78 8.4E-83 723.4 31.4 466 91-873 6-515 (542)
9 1rqg_A Methionyl-tRNA syntheta 100.0 2.6E-76 8.9E-81 721.2 36.1 456 94-873 2-530 (722)
10 2x1l_A Methionyl-tRNA syntheta 100.0 4E-74 1.4E-78 683.7 30.9 444 91-862 9-492 (524)
11 2d5b_A Methionyl-tRNA syntheta 100.0 3.9E-73 1.3E-77 672.0 28.5 436 93-862 2-470 (500)
12 2csx_A Methionyl-tRNA syntheta 100.0 5.3E-73 1.8E-77 669.8 27.9 432 93-862 4-469 (497)
13 4dlp_A Aminoacyl-tRNA syntheta 100.0 1.1E-71 3.6E-76 663.6 32.8 440 91-862 22-499 (536)
14 3kfl_A Methionyl-tRNA syntheta 100.0 2.7E-72 9.2E-77 670.6 27.0 457 81-862 15-516 (564)
15 3h99_A Methionyl-tRNA syntheta 100.0 4.5E-71 1.5E-75 661.5 31.4 455 90-875 14-530 (560)
16 3c8z_A Cysteinyl-tRNA syntheta 100.0 3.2E-42 1.1E-46 396.0 23.1 119 92-217 38-157 (414)
17 3sp1_A Cysteinyl-tRNA syntheta 100.0 7.1E-42 2.4E-46 393.7 13.0 126 93-224 42-177 (501)
18 3tqo_A Cysteinyl-tRNA syntheta 100.0 4E-41 1.4E-45 386.2 15.5 129 91-225 23-152 (462)
19 1li5_A Cysrs, cysteinyl-tRNA s 100.0 7.4E-38 2.5E-42 363.3 19.5 127 91-224 20-148 (461)
20 3o0a_A Leucyl-tRNA synthetase 100.0 2E-37 6.8E-42 323.1 17.3 197 286-490 1-219 (219)
21 2ajg_A Leucyl-tRNA synthetase; 100.0 2.6E-35 9E-40 303.5 16.8 185 288-485 10-195 (196)
22 1wny_A Isoleucyl-tRNA syntheta 100.0 1E-32 3.4E-37 281.9 10.6 178 287-488 2-183 (186)
23 1wka_A Valyl-tRNA synthetase; 100.0 1.4E-30 4.8E-35 255.3 14.6 143 288-488 4-146 (147)
24 2wfd_A Leucyl-tRNA synthetase, 100.0 2.9E-29 1E-33 267.8 9.4 184 292-484 9-249 (252)
25 2wfg_A Cytosolic leucyl-tRNA s 99.9 9.7E-29 3.3E-33 264.6 8.4 174 306-488 32-252 (261)
26 3pz6_A Leurs, leucyl-tRNA synt 99.9 9.3E-27 3.2E-31 247.5 8.7 171 306-483 79-302 (311)
27 3fnr_A Arginyl-tRNA synthetase 99.9 2.9E-21 9.9E-26 223.0 26.0 121 707-831 283-415 (464)
28 1irx_A Lysyl-tRNA synthetase; 99.9 1.2E-23 4.1E-28 248.8 5.2 115 95-214 20-153 (523)
29 1iq0_A Arginyl-tRNA synthetase 99.9 1.3E-22 4.6E-27 242.7 14.1 115 95-213 104-264 (592)
30 2zue_A Arginyl-tRNA synthetase 99.9 7E-21 2.4E-25 228.5 24.5 129 93-224 118-308 (629)
31 1f7u_A Arginyl-tRNA synthetase 99.6 7.4E-14 2.5E-18 166.5 25.8 117 93-214 142-318 (607)
32 1nzj_A Hypothetical protein YA 98.0 6.8E-06 2.3E-10 89.4 6.4 89 102-214 11-101 (298)
33 3aii_A Glutamyl-tRNA synthetas 98.0 1E-05 3.6E-10 94.0 8.1 93 98-213 98-190 (553)
34 1qtq_A GLNRS, protein (glutami 97.9 1.3E-05 4.6E-10 93.1 8.0 94 98-213 28-121 (553)
35 2hz7_A Glutaminyl-tRNA synthet 97.7 3.1E-05 1.1E-09 93.9 7.2 95 97-213 67-161 (851)
36 2o5r_A Glutamyl-tRNA synthetas 97.7 4.9E-05 1.7E-09 88.1 7.8 97 96-213 13-116 (481)
37 3al0_C Glutamyl-tRNA(Gln) amid 97.6 6.7E-05 2.3E-09 88.9 7.8 92 100-214 133-233 (592)
38 2cfo_A Glutamyl-tRNA synthetas 97.6 4.8E-05 1.6E-09 88.3 6.4 88 102-213 7-96 (492)
39 4g6z_A Glutamate-tRNA ligase; 97.5 0.00011 3.8E-09 84.7 6.8 91 102-214 31-121 (490)
40 3afh_A Glutamyl-tRNA synthetas 97.2 0.00044 1.5E-08 80.1 7.5 93 99-214 28-129 (488)
41 1j09_A Glutamyl-tRNA synthetas 97.1 0.00043 1.5E-08 79.8 5.8 92 102-214 7-105 (468)
42 2ja2_A Glutamyl-tRNA synthetas 96.8 0.0018 6.1E-08 75.1 7.8 90 102-214 12-110 (498)
43 4gri_A Glutamate--tRNA ligase; 96.7 0.0017 6E-08 75.9 7.5 92 102-214 30-128 (512)
44 2cyb_A Tyrosyl-tRNA synthetase 96.4 0.0019 6.5E-08 71.2 4.7 73 96-184 33-105 (323)
45 3aii_A Glutamyl-tRNA synthetas 96.3 0.0019 6.6E-08 75.1 3.7 55 706-760 326-396 (553)
46 1qtq_A GLNRS, protein (glutami 93.5 0.021 7.3E-07 66.4 1.7 55 705-759 263-333 (553)
47 2cfo_A Glutamyl-tRNA synthetas 93.5 0.042 1.4E-06 63.6 4.1 34 706-740 244-278 (492)
48 2yxn_A Tyrosyl-tRNA synthetase 92.9 0.039 1.3E-06 60.5 2.6 31 706-738 232-262 (322)
49 1y42_X Tyrosyl-tRNA synthetase 92.7 0.064 2.2E-06 60.3 3.9 75 97-178 66-143 (392)
50 2ts1_A Tyrosyl-tRNA synthetase 92.2 0.037 1.3E-06 62.7 1.2 31 706-738 227-257 (419)
51 1jil_A Tyrrs, tyrosyl-tRNA syn 92.1 0.041 1.4E-06 62.5 1.5 74 97-177 34-110 (420)
52 2g36_A Tryptophanyl-tRNA synth 91.9 0.14 4.6E-06 56.6 5.3 69 99-180 16-84 (340)
53 2jan_A Tyrosyl-tRNA synthetase 91.8 0.042 1.4E-06 62.4 1.1 31 706-738 228-259 (432)
54 3tzl_A Tryptophanyl-tRNA synth 91.8 0.12 4E-06 56.7 4.6 61 105-179 12-72 (322)
55 2pid_A Tyrosyl-tRNA synthetase 91.7 0.036 1.2E-06 61.6 0.4 31 706-738 251-281 (356)
56 1h3f_A Tyrosyl-tRNA synthetase 91.6 0.07 2.4E-06 60.8 2.7 28 707-739 229-257 (432)
57 2el7_A Tryptophanyl-tRNA synth 91.0 0.17 5.9E-06 55.7 4.9 65 105-180 10-75 (337)
58 1ile_A Ilers, isoleucyl-tRNA s 90.1 0.083 2.8E-06 65.5 1.5 76 196-285 361-438 (821)
59 1n3l_A Tyrosyl-tRNA synthetase 89.9 0.14 4.7E-06 57.3 3.0 38 97-140 37-74 (372)
60 2hz7_A Glutaminyl-tRNA synthet 89.6 0.083 2.8E-06 64.4 0.9 54 705-758 303-372 (851)
61 2zp1_A Tyrosyl-tRNA synthetase 89.5 0.19 6.4E-06 54.9 3.6 71 95-179 28-98 (314)
62 2o5r_A Glutamyl-tRNA synthetas 89.3 0.22 7.4E-06 57.6 4.1 34 706-740 259-293 (481)
63 1wkb_A Leucyl-tRNA synthetase; 88.7 0.092 3.1E-06 65.0 0.5 93 192-285 391-500 (810)
64 1ffy_A Isoleucyl-tRNA syntheta 88.6 0.12 4.1E-06 64.6 1.4 52 235-286 394-446 (917)
65 1gax_A Valrs, valyl-tRNA synth 88.5 0.21 7.1E-06 62.0 3.4 77 196-286 316-395 (862)
66 1yi8_B Tryptophanyl-tRNA synth 88.0 0.39 1.3E-05 53.1 4.9 70 96-179 23-92 (351)
67 2yy5_A Tryptophanyl-tRNA synth 87.8 0.46 1.6E-05 52.6 5.2 70 97-181 6-75 (348)
68 3tzl_A Tryptophanyl-tRNA synth 87.7 0.46 1.6E-05 51.9 5.2 28 706-738 189-216 (322)
69 3vgj_A Tyrosyl-tRNA synthetase 86.9 0.26 8.8E-06 55.1 2.6 72 97-180 58-130 (373)
70 2dlc_X Tyrosyl-tRNA synthetase 86.8 0.26 8.9E-06 55.5 2.6 41 94-140 38-78 (394)
71 1j09_A Glutamyl-tRNA synthetas 86.2 0.39 1.3E-05 55.2 3.7 35 706-741 240-275 (468)
72 1i6k_A TRPRS, tryptophanyl-tRN 85.8 0.67 2.3E-05 50.8 5.2 62 105-180 10-71 (328)
73 3hv0_A Tryptophanyl-tRNA synth 85.6 2.1 7.1E-05 48.0 9.1 78 93-182 72-150 (393)
74 3i05_A Tryptophanyl-tRNA synth 85.6 0.33 1.1E-05 54.5 2.6 76 93-181 76-152 (395)
75 2cya_A Tyrosyl-tRNA synthetase 85.5 0.81 2.8E-05 50.9 5.7 74 96-181 36-109 (364)
76 3al0_C Glutamyl-tRNA(Gln) amid 84.4 0.61 2.1E-05 55.2 4.2 35 706-741 356-391 (592)
77 1wz2_A Leucyl-tRNA synthetase; 84.2 0.36 1.2E-05 60.8 2.4 93 192-285 391-500 (967)
78 3hzr_A Tryptophanyl-tRNA synth 84.0 2.3 7.8E-05 47.5 8.5 77 93-182 80-156 (386)
79 2ja2_A Glutamyl-tRNA synthetas 83.8 0.85 2.9E-05 52.7 5.0 35 706-741 254-289 (498)
80 3afh_A Glutamyl-tRNA synthetas 83.7 0.95 3.3E-05 52.2 5.4 35 706-741 252-287 (488)
81 2ip1_A Tryptophanyl-tRNA synth 83.6 0.34 1.2E-05 55.1 1.6 43 94-140 101-143 (432)
82 2cyb_A Tyrosyl-tRNA synthetase 82.8 1.9 6.6E-05 47.0 7.2 29 706-739 211-239 (323)
83 3jxe_A Tryptophanyl-tRNA synth 82.7 2 6.7E-05 48.1 7.3 78 93-182 71-148 (392)
84 2cya_A Tyrosyl-tRNA synthetase 82.5 0.61 2.1E-05 51.9 3.1 27 707-738 236-263 (364)
85 3a04_A Tryptophanyl-tRNA synth 82.2 1.3 4.5E-05 49.3 5.6 77 93-182 68-144 (372)
86 2cyc_A Tyrosyl-tRNA synthetase 81.9 0.68 2.3E-05 51.7 3.2 73 97-180 35-112 (375)
87 2zp1_A Tyrosyl-tRNA synthetase 81.8 1.3 4.4E-05 48.2 5.3 16 707-722 201-217 (314)
88 3jxe_A Tryptophanyl-tRNA synth 81.4 0.66 2.3E-05 52.0 2.8 19 603-622 208-226 (392)
89 1r6t_A Tryptophanyl-tRNA synth 81.3 0.71 2.4E-05 53.1 3.1 14 708-721 348-362 (477)
90 1r6u_A Tryptophanyl-tRNA synth 81.2 0.74 2.5E-05 52.3 3.2 15 708-722 301-316 (437)
91 1i6k_A TRPRS, tryptophanyl-tRN 80.0 1.2 4E-05 48.8 4.2 23 601-624 136-158 (328)
92 2ip1_A Tryptophanyl-tRNA synth 79.9 2 6.7E-05 48.8 6.1 15 708-722 294-309 (432)
93 3foc_A Tryptophanyl-tRNA synth 79.4 3.6 0.00012 46.8 8.0 79 93-182 89-167 (451)
94 2j5b_A Tyrosyl-tRNA synthetase 79.1 0.89 3E-05 50.2 2.9 76 95-181 40-115 (348)
95 2el7_A Tryptophanyl-tRNA synth 79.0 1.9 6.4E-05 47.4 5.4 28 706-738 191-219 (337)
96 3hv0_A Tryptophanyl-tRNA synth 78.5 0.85 2.9E-05 51.1 2.5 13 708-720 265-278 (393)
97 1r6t_A Tryptophanyl-tRNA synth 78.2 2.4 8.1E-05 48.8 6.2 77 93-181 153-229 (477)
98 2dlc_X Tyrosyl-tRNA synthetase 78.2 3.9 0.00013 45.8 7.9 27 707-738 225-252 (394)
99 3hzr_A Tryptophanyl-tRNA synth 77.8 1.5 5.2E-05 48.9 4.3 15 708-722 268-283 (386)
100 2g36_A Tryptophanyl-tRNA synth 77.2 3 0.0001 45.8 6.4 28 706-738 202-229 (340)
101 3tze_A Tryptophanyl-tRNA synth 75.9 4.1 0.00014 45.7 7.1 77 93-182 99-176 (406)
102 3tze_A Tryptophanyl-tRNA synth 75.5 1.4 4.9E-05 49.5 3.2 22 602-624 243-264 (406)
103 3i05_A Tryptophanyl-tRNA synth 73.9 5.4 0.00019 44.6 7.5 15 131-145 75-89 (395)
104 3sz3_A Tryptophanyl-tRNA synth 73.4 2.1 7.3E-05 47.0 3.9 64 105-182 15-78 (341)
105 1r6u_A Tryptophanyl-tRNA synth 73.2 3.4 0.00012 46.9 5.6 77 93-181 106-182 (437)
106 3p0j_A Tyrosyl-tRNA synthetase 70.9 1.5 5.2E-05 52.7 2.2 74 95-180 40-114 (690)
107 3prh_A Tryptophanyl-tRNA synth 70.3 3.3 0.00011 46.2 4.6 74 94-182 30-107 (388)
108 3foc_A Tryptophanyl-tRNA synth 70.1 1.7 5.7E-05 49.5 2.1 12 708-719 332-344 (451)
109 2j5b_A Tyrosyl-tRNA synthetase 69.9 4.7 0.00016 44.4 5.7 21 602-623 186-206 (348)
110 1y42_X Tyrosyl-tRNA synthetase 69.8 4.5 0.00015 45.3 5.6 31 706-738 290-320 (392)
111 2ts1_A Tyrosyl-tRNA synthetase 69.8 5.9 0.0002 44.7 6.5 74 97-177 32-108 (419)
112 3vgj_A Tyrosyl-tRNA synthetase 67.0 5.3 0.00018 44.4 5.4 23 601-624 199-221 (373)
113 1jil_A Tyrrs, tyrosyl-tRNA syn 66.8 6.7 0.00023 44.3 6.2 31 706-738 228-258 (420)
114 3sz3_A Tryptophanyl-tRNA synth 66.7 4 0.00014 44.8 4.2 25 601-626 142-166 (341)
115 3n9i_A Tryptophanyl-tRNA synth 64.7 6.2 0.00021 43.3 5.3 25 601-626 151-175 (346)
116 3prh_A Tryptophanyl-tRNA synth 64.6 5.7 0.00019 44.3 5.0 25 601-626 170-194 (388)
117 2yy5_A Tryptophanyl-tRNA synth 63.5 8.5 0.00029 42.3 6.1 24 601-625 146-169 (348)
118 2cyc_A Tyrosyl-tRNA synthetase 61.8 8.7 0.0003 42.7 5.9 26 708-738 250-276 (375)
119 3p0j_A Tyrosyl-tRNA synthetase 58.6 12 0.0004 45.0 6.6 17 601-617 519-535 (690)
120 1n3l_A Tyrosyl-tRNA synthetase 58.3 5.1 0.00018 44.5 3.2 28 706-738 219-247 (372)
121 1nzj_A Hypothetical protein YA 58.3 4.3 0.00015 43.7 2.5 12 706-717 225-236 (298)
122 3n9i_A Tryptophanyl-tRNA synth 53.4 8 0.00027 42.4 3.6 70 98-182 18-87 (346)
123 2yxn_A Tyrosyl-tRNA synthetase 53.3 14 0.00046 40.2 5.5 74 97-177 35-111 (322)
124 4g6z_A Glutamate-tRNA ligase; 51.3 17 0.00058 41.8 6.0 34 706-740 261-295 (490)
125 1yi8_B Tryptophanyl-tRNA synth 51.1 9.4 0.00032 42.0 3.8 27 707-738 212-239 (351)
126 2pid_A Tyrosyl-tRNA synthetase 46.3 30 0.001 38.0 6.9 72 96-177 47-124 (356)
127 3a04_A Tryptophanyl-tRNA synth 34.9 11 0.00039 41.7 1.2 20 604-624 210-229 (372)
128 2jan_A Tyrosyl-tRNA synthetase 33.3 21 0.0007 40.4 2.9 75 97-177 34-109 (432)
129 1h3f_A Tyrosyl-tRNA synthetase 33.0 20 0.00068 40.6 2.8 77 95-179 37-116 (432)
No 1
>4arc_A Leucine--tRNA ligase; ligase-RNA complex, nucleotide-binding, protein biosynthesis I aminoacyl-tRNA synthetase, ATP-binding; 2.00A {Escherichia coli} PDB: 4aq7_A 4ari_A* 4as1_A*
Probab=100.00 E-value=5e-188 Score=1716.12 Aligned_cols=848 Identities=41% Similarity=0.745 Sum_probs=720.4
Q ss_pred cccCCChhhhhHHHHHHHHHcCCCCCCCCCCCCCCcEEEEcCCCCCCCCCCCCchhHHHHHHHHHHHHHHHcCCcccccc
Q 002217 60 VKRAYPFHEIEPKWQSYWENNRTFRTPDEIDTSKPKFYVLDMFPYPSGAGLHVGHPLGYTATDILARLKRMQGYNVLHPM 139 (952)
Q Consensus 60 ~~~~y~~~~iE~k~~~~W~~~~~f~~~~~~~~~k~kf~i~~~~Pypng~~lHiGH~~~~~~~Di~~Ry~r~~G~~V~~~~ 139 (952)
+.+.|||.++|++||++|+++++|++.. +.++++||+++|||||||. |||||+++++++|+++||+||+||+|++++
T Consensus 21 m~~~y~~~~iE~kw~~~W~~~~~f~~~~--~~~~~~~~v~~~~PypnG~-lHiGHa~~~~~~DvlaRy~rm~G~~V~~~~ 97 (880)
T 4arc_A 21 MQEQYRPEEIESKVQLHWDEKRTFEVTE--DESKEKYYCLSMLPYPSGR-LHMGHVRNYTIGDVIARYQRMLGKNVLQPI 97 (880)
T ss_dssp CCSSCCHHHHHHHHHHHHHHTTTTCCCC--CTTSCEEEEEECCCCCCSS-CCHHHHHHHHHHHHHHHHHHHTTCEEECCC
T ss_pred ccccCChHHHHHHHHHHHHhcCCcccCC--cCCCCCEEEEcCCCCCCCC-cchhhhHHHHHHHHHHHHHHHcCCceEEec
Confidence 5578999999999999999999999763 4578999999999999998 999999999999999999999999999999
Q ss_pred cccccChHHHHHHHHhCCCchHHHHHHHHHHHHHHHHcCCccccCCcccCCChhHHHHHHHHHHHHHHCCceeeeccccc
Q 002217 140 GWDAFGLPAEQYAIETGTHPKITTLRNINRFRTQLKSLGFSYDWNREISTIEPAYYKWTQWIFLQLLKRGLAYQAEVPVN 219 (952)
Q Consensus 140 G~D~~Glpie~~a~~~g~~~~~~~~~~~~~~~~~l~~lgi~~Dw~~~~~T~~~~~~~~v~~~f~~L~~kGliy~~~~~v~ 219 (952)
||||||+|||++|++.|++|++++.++++.|++||++||+++||+++++|+||.|+++++|+|.+|+++|+||++.++|+
T Consensus 98 G~D~~Glpie~~a~~~g~~p~~~~~~~i~~~~~~l~~LGis~Dw~~~~~T~d~~~~~~v~~~f~~L~ekGliY~~~~~v~ 177 (880)
T 4arc_A 98 GWDAFGLPAEGAAVKNNTAPAPWTYDNIAYMKNQLKMLGFGYDWSRELATCTPEYYRWEQKFFTELYKKGLVYKKTSAVN 177 (880)
T ss_dssp EECCCSTHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHTTCCCCGGGCEETTSHHHHHHHHHHHHHHHHTTCEEEEEECC-
T ss_pred CccccCcHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHhCCCcCCCCCEEcCCHHHHHHHHHHHHHHHHCCCEEEeceeEe
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCCCcccCchhhccCccccCCCCeEEeeccccchhhhhhhhHhhccCCCC-CCchHHHHHHHhhhccCCCceEEEEEe
Q 002217 220 WCPALGTVLANEEVVDGVSERGGHPVIRKPMRQWMLKITEYADRLLDDLDDL-DWPESVKEMQRNWIGRSEGAEMDFRVL 298 (952)
Q Consensus 220 wc~~~~t~ls~~Ev~~~~~~~~~~~~~~~~~~~~~~~i~~y~~~l~~~l~~~-~~p~~~~~~~~~~i~~s~~~~v~f~~~ 298 (952)
|||.|+|+||++||++|+|++||.+|++++++||||+|++|+++|+++|+.+ .||+.++.||+||||+|+|++|+|++.
T Consensus 178 wcp~~~t~La~~ev~~g~~~~~g~~ve~~~~~~~f~~i~~y~~~Ll~~l~~~~~wp~~v~~~~~~wig~s~g~~v~f~~~ 257 (880)
T 4arc_A 178 WCPNDQTVLANEQVIDGCCWRCDTKVERKEIPQWFIKITAYADELLNDLDKLDHWPDTVKTMQRNWIGRSEGVEITFNVN 257 (880)
T ss_dssp -----------------------------CEEEEEECGGGGHHHHHHHGGGCTTSCHHHHHHHHHHHCEEEEEEEEEEET
T ss_pred ecCCcCCEecchhhhcCcCcCCCCccEEEEccceEEeechhHHHHHHHHhhcccccHHHHHHHHhhhccccceEEEEEec
Confidence 9999999999999999999999999999999999999999999999999988 499999999999999999999999995
Q ss_pred cCCCCccCcEEEEecCCcchhccccEEEECCCCccchhhccccchHHHHHHHHHHhccchhhHhhhhhcccccccceEEe
Q 002217 299 DSDGQERDIKITVYTTRPDTIFGATYLVVAPEHPLLSSLVSTTQSQNIEEYKNLASRKSDLERTELQKEKTGVFSGCYAR 378 (952)
Q Consensus 299 ~~~~~~~~~~i~i~TT~P~Tl~g~~~v~v~p~~~y~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~l~g~~~~ 378 (952)
+. +.+|+|||||||||||++||+|||+|+|+..++..+ ..+++|++.+...+..++.....++.|.++|.++.
T Consensus 258 ~~-----~~~i~v~TTrP~Tl~g~t~vav~Pe~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~ 330 (880)
T 4arc_A 258 DY-----DNTLTVYTTRPDTFMGCTYLAVAAGHPLAQKAAENN--PELAAFIDECRNTKVAEAEMATMEKKGVDTGFKAV 330 (880)
T ss_dssp TC-----SSEEEEEESCGGGGGGCCEEEECTTCHHHHHHGGGC--HHHHHHHTC----------------CEEEEEEEEE
T ss_pred CC-----CceEEEEeCCchhhcCCeEEEECCCcHHHHHHhcCh--HHHHHHHHHHhccCchhhhhccceeeccccCcEEe
Confidence 32 368999999999999999999999999998876432 44667776555544444444445788999999999
Q ss_pred cCCCCCcccEEecCcccCCCCCCceEecCCCChhhHHHHHHcCCceeeeecCCCCCC-ccccccccccceEEcccCcccc
Q 002217 379 NPASGEAIPIWVADYVLGSYGTGAIMAVPAHDTRDHEFALKFDISIHSVVMPDDESS-SQSEKAYTGEGLIVNSSNLISG 457 (952)
Q Consensus 379 ~P~~~~~~pv~~~~~V~~~~GTG~V~~~Pah~~~D~~~~~~~~L~i~~vv~~~~~~~-~~~~~~y~~~g~l~~~~~~~~~ 457 (952)
||++|+++|||++|||++++|||+||+|||||++||+||++||||+++||++.++.. ....++|+++|+|+|+.
T Consensus 331 ~P~~~~~ipi~~~~yV~~~~GTGaV~~~Pahd~~D~~~~~~~~Lpi~~vi~~~~~~~~~~~~~~~~~~g~~~ns~----- 405 (880)
T 4arc_A 331 HPLTGEEIPVWAANFVLMEYGTGAVMAVPGHDQRDYEFASKYGLNIKPVILAADGSEPDLSQQALTEKGVLFNSG----- 405 (880)
T ss_dssp CTTTCCEEEEEEETTSCSSSTTSEEEECTTTCHHHHHHHHHHTCCCCCCBCCTTSCCCCCSSSCCCSCCCBCSSG-----
T ss_pred cCCCCCEeEEEEeCccccCCCCceEEEccCCCHHHHHHHHHcCCCceEeeccCcccccccccccccCCceeecCc-----
Confidence 999999999999999999999999999999999999999999999999998753321 12356899999998875
Q ss_pred cccCCCCHHHHHHHHHHHHHHcCCCcceecccCCceeecccCCCCcccCceEeCCCCceeecCCCCcCCCCCcccccCCC
Q 002217 458 LDINGLSCQEATSKVIEWAEKTGNGKKKVNYKLRDWLFARQRYWGEPIPVVFLDGTGETVPLHEAELPLTLPELDDFTPT 537 (952)
Q Consensus 458 ~~~~gl~~~~a~~~ii~~l~~~~~~~~~~~~~l~DW~ISRQR~WG~PIPv~~~~~~~~~~~~~~~~l~v~lp~~~~~~~~ 537 (952)
.++||...+|+++|+++|++.|.+.+.++|++||||||||||||+|||||||++|| .+++++++||+.||+. +.+.
T Consensus 406 -~~~Gl~~~eA~~~ii~~L~~~g~~~~~v~yrlrDW~iSRQRyWG~PIPi~~c~~cg-~v~v~~~~Lpv~lp~~--~~~~ 481 (880)
T 4arc_A 406 -EFNGLDHEAAFNAIADKLTAMGVGERKVNYRLRDWGVSRQRYWGAPIPMVTLEDGT-VMPTPDDQLPVILPED--VVMD 481 (880)
T ss_dssp -GGTTCCHHHHHHHHHHHHHHTTSEEEEEEESCCCEECEESCSSSCBCCEEEETTSC-EEECCGGGCSCCCCSS--CCCC
T ss_pred -ccCCCCHHHHHHHHHHHHHHcCCcceeEEEEcccceeeeeeccCCcceEEEECCCC-eEeCChHHCccccchh--cccC
Confidence 49999999999999999999999999999999999999999999999999998775 6788999999999983 4455
Q ss_pred CCCCCCCccccccccccccCCCCCccccCCCccccccccchhheecCCCCchhHhhhhhhhcCCCceeEecCchhhHHHH
Q 002217 538 GTGEPPLSKAVSWVQTTEHSSGKPARRETSTMPQWAGSCWYYLRFMDPKNSKELVDKTKERYWSPVDVYVGGAEHAVLHL 617 (952)
Q Consensus 538 G~~~~~l~~~~~w~~~~~~~~g~~~~re~d~lD~WfdSswy~~~~~~p~~~~~~~~~~~~~~w~PvDlyv~G~D~~~~HL 617 (952)
|.| +||..+.+|+++.|| |++++||||||||||||||||+||++|++++.+++++..+||||+|+|+||+||+++||
T Consensus 482 ~~g-~pl~~~~~w~~~~cp--g~~~~retDtmDtw~dSswy~~r~~~p~~~~~~~~~~~~~~~~PvD~yigG~EHailHl 558 (880)
T 4arc_A 482 GIT-SPIKADPEWAKTTVN--GMPALRETDTFDTFMESSWYYARYTCPQYKEGMLDSEAANYWLPVDIYIGGIEHAIMHL 558 (880)
T ss_dssp SSS-CHHHHSTTTTEEESS--SSEEEECCCEECTTTGGGTHHHHTTSTTCCSSSCCHHHHHHHCSEEEEECCGGGTTTHH
T ss_pred CCC-CchHhCccceeeccC--CCcceeCCCcCCCcccCcHHHHhhcCCCccccccChHHHhccCCceEeecchhhHHHHH
Confidence 555 799999999999998 88999999999999999999999999999888898888899999999999999999999
Q ss_pred HHHHHHHHHHHHhcCcCCCCcchhhhhhceeccccceeEEecCCCc--cccCCCCCcccccccccCccccccccCCceee
Q 002217 618 LYARFWHKVLYDIGVVSTKEPFKCVINQGIILGEMQYMVCKDVDGS--YISADSTDTLGEYEQESIPEEKVMKSGDFFVM 695 (952)
Q Consensus 618 ly~Rfw~~~L~~~~~~~~~~PFk~l~~~G~vl~~~~y~~~~d~~g~--~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~vl 695 (952)
+|+||||++|+++|++.+++||++|++||||+++++| .+|++|+ |+++++++.........+ ..+
T Consensus 559 lyaRf~~~~L~~~g~~~~~ePFk~ll~qGmVl~~~~~--~~d~~G~~~~~~~~~v~~~~~~~~~~~-----------~~~ 625 (880)
T 4arc_A 559 LYFRFFHKLMRDAGMVNSDEPAKQLLCQGMVLADAFY--YVGENGERNWVSPVDAIVERDEKGRIV-----------KAK 625 (880)
T ss_dssp HHHHHHHHHHHHTTSCCCSCSEEEEECCCCEEEEEEE--EECTTSCEEEECSTTCEEEECTTCCEE-----------EEE
T ss_pred HHHHHHHHHHHHhhcccCCCChHHeEEeceEeeccee--ccccCCcccccCHHHhccccccccccc-----------ccc
Confidence 9999999999999999999999999999999988643 2688887 999998875432111100 011
Q ss_pred ccCcchhhcccccccccCCCCCCChhhHHhhhCchhhhhhhhhcCCCCCCCCCChhhHHHHHHHHHHHHHHHhccCCCCC
Q 002217 696 KDNPNIRLIARAHKMSKSRGNVVNPDDVVTEYGADSLRLYEMFMGPFRDSKTWNTSGIEGVHRFLGRMWRLIVGSSLPDG 775 (952)
Q Consensus 696 ~~~~~~~v~~~g~KMSKSkGNvV~P~eii~~YGaDalRl~ll~~~~~~~~~~~s~~~i~~~~r~l~~l~~~~~~~~~~~~ 775 (952)
..++...+....+|||||+||+|+|.++|++||||++|||+|++++++++++|+++++++++||++|+|+++...... .
T Consensus 626 ~~~G~~v~~~~~eKMSKSkGNvVdP~diIekYGADalRl~ll~~~~~~~dl~~s~~~ie~a~rfl~rlwn~~~~~~~~-~ 704 (880)
T 4arc_A 626 DAAGHELVYTGMSKMSKSKNNGIDPQVMVERYGADTVRLFMMFASPADMTLEWQESGVEGANRFLKRVWKLVYEHTAK-G 704 (880)
T ss_dssp CTTCCBCEEEEEEECCTTTTCCCCHHHHHHHHCHHHHHHHHHHSSCTTSCEECCHHHHHHHHHHHHHHHHHHHHHHHT-C
T ss_pred ccCCccccccccccccCcCCCCCCHHHHHHHcCchHHHHHHHhcCCCCCCcccCHHHHHHHHHHHHHHHHHHHHHHhc-c
Confidence 233333334456799999999999999999999999999999999999999999999999999999999987432100 0
Q ss_pred CCCCCccCCCCCChHHHHHHHHHHHHHHHHHHh-cCChHHHHHHHHHHHHHHhcccc-------hhHHHHHHHHHHhCCc
Q 002217 776 TFKGGTVVNDEEPTLEQLCTLHKCIAKVTEEIE-GTRFNTGISAMMEFINAAYKWEK-------HPRKIIEPFILLLAPY 847 (952)
Q Consensus 776 ~~~~~~~~~~~~~d~~~l~~l~~~i~~v~~~~e-~~~f~~ai~~l~~f~~~~~~~~~-------~~~~vL~~l~~LLaPf 847 (952)
.............|+|+++++++++++|+++|+ +|+|++|++++|+|++.++++.. .++++|+.+++||+||
T Consensus 705 ~~~~~~~~~l~~~D~~ll~~l~~~i~~V~~a~ed~~~fntAi~~l~efvn~l~k~~~~~~~~~~~l~~~l~~ll~LLaPf 784 (880)
T 4arc_A 705 DVAALNVDALTENQKALRRDVHKTIAKVTDDIGRRQTFNTAIAAIMELMNKLAKAPTDGEQDRALMQEALLAVVRMLNPF 784 (880)
T ss_dssp CCCCCCSTTCCHHHHHHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHTSCCSSHHHHHHHHHHHHHHHHHHTTT
T ss_pred cccccccccCCHHHHHHHHHHHHHHHHHHHHHHhhhchhHHHHHHHHHHHHHHhhhccchHHHHHHHHHHHHHHHHHhhc
Confidence 000000111234588999999999999999998 79999999999999999988632 4578999999999999
Q ss_pred chhHHHHHHHHcCCCCCccccCCCCCCccccCCCceEEeEEEeceeEEEEEecCCCCHHHHHHHHccCHHHHhhhCCCCe
Q 002217 848 APHMSEELWFRLGHSNSLAYESFPKANPDYLKDSTIVLPIQINGKTRGTIQVEEGCSEEEAFKLASLDEKLSKFLDGKSI 927 (952)
Q Consensus 848 ~P~iaEElw~~L~~~~sV~~~~WP~~~~~~l~~~~i~l~vqVngk~r~~i~v~~~~s~e~~~~~~~~~~~~~~~l~gk~i 927 (952)
|||+|||||+.|+..+||+.++||+++++++.+++++++||||||+|+.++|++++++++++++++++++++++|+||+|
T Consensus 785 ~PhiaEElW~~Lg~~~sv~~~~wP~~d~~~l~~~~~~~~vqvngk~r~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 864 (880)
T 4arc_A 785 TPHICFTLWQELKGEGDIDNAPWPVADEKAMVEDSTLVVVQVNGKVRAKITVPVDATEEQVRERAGQEHLVAKYLDGVTV 864 (880)
T ss_dssp SHHHHHHHHHHTTCSSCGGGSCCCCCCHHHHCCSEEEEEEEETTEEEEEEEEETTCCHHHHHHHHHHCHHHHTTTTTCCC
T ss_pred cHHHHHHHHHHcCCCCeEEeCCCCCCCHHHhccCceEEEEEEecceEEEEEcCCCCCHHHHHHHHhcCHHHHHHhCCCCc
Confidence 99999999999999899999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEEEeCCcEEEEEec
Q 002217 928 KKRIYVPGRILNVILD 943 (952)
Q Consensus 928 ~kvi~vp~kiin~v~~ 943 (952)
+|+|+|||||||||++
T Consensus 865 ~k~i~v~~k~vn~v~~ 880 (880)
T 4arc_A 865 RKVIYVPGKLLNLVVG 880 (880)
T ss_dssp CEEEEETTTEEEEECC
T ss_pred eEEEEECCCEEEEEeC
Confidence 9999999999999985
No 2
>2v0c_A Aminoacyl-tRNA synthetase; ligase, nucleotide-binding, protein biosynthesis; HET: LMS ANZ; 1.85A {Thermus thermophilus} PDB: 1h3n_A* 1obc_A* 1obh_A* 2bte_A* 2byt_A 2v0g_A*
Probab=100.00 E-value=1.4e-179 Score=1655.84 Aligned_cols=858 Identities=44% Similarity=0.777 Sum_probs=689.8
Q ss_pred CCChhhhhHHHHHHHHHcCCCCCCCCCCCCCCcEEEEcCCCCCCCCCCCCchhHHHHHHHHHHHHHHHcCCccccccccc
Q 002217 63 AYPFHEIEPKWQSYWENNRTFRTPDEIDTSKPKFYVLDMFPYPSGAGLHVGHPLGYTATDILARLKRMQGYNVLHPMGWD 142 (952)
Q Consensus 63 ~y~~~~iE~k~~~~W~~~~~f~~~~~~~~~k~kf~i~~~~Pypng~~lHiGH~~~~~~~Di~~Ry~r~~G~~V~~~~G~D 142 (952)
+|||.++|++||++|+++++|+... .+.++++||+++|||||||. |||||+++++++|+++||+||+||+|++++|||
T Consensus 3 ~y~~~~iE~kw~~~W~~~~~f~~~~-~~~~~~k~~v~~~~Py~nG~-lHiGHa~~~~~~Dvl~Ry~rm~G~~V~~~~G~D 80 (878)
T 2v0c_A 3 KYNPHAIEAKWQRFWEEKGFMKAKD-LPGGRGKQYVLVMFPYPSGD-LHMGHLKNYTMGDVLARFRRMQGYEVLHPMGWD 80 (878)
T ss_dssp CCCCTTHHHHHHHHHHHHTTTCCCS-CCC---EEEEEECCCCCSSC-CBHHHHHHHHHHHHHHHHHHHHTCEEECCCCBC
T ss_pred CCCHHHHHHHHHHHHHHcCCcccCc-ccCCCCCEEEECCCCCCCCC-cchhhhHHHHHHHHHHHHHHhcCCceEeecccC
Confidence 6999999999999999999999874 35678999999999999998 999999999999999999999999999999999
Q ss_pred ccChHHHHHHHHhCCCchHHHHHHHHHHHHHHHHcCCccccCCcccCCChhHHHHHHHHHHHHHHCCceeeeccccccCC
Q 002217 143 AFGLPAEQYAIETGTHPKITTLRNINRFRTQLKSLGFSYDWNREISTIEPAYYKWTQWIFLQLLKRGLAYQAEVPVNWCP 222 (952)
Q Consensus 143 ~~Glpie~~a~~~g~~~~~~~~~~~~~~~~~l~~lgi~~Dw~~~~~T~~~~~~~~v~~~f~~L~~kGliy~~~~~v~wc~ 222 (952)
|||+|||++|.+.|++|+++++++++.|+++|++||+++||++++.|++|.|+++++|+|.+|+++|+||++.++|+|||
T Consensus 81 ~~Glpie~~a~k~g~~~~~~~~~~~~~~~~~~~~LGi~~Dw~~~~~T~d~~~~~~v~~~f~~L~~kGliY~~~~~v~w~p 160 (878)
T 2v0c_A 81 AFGLPAENAALKFGVHPKDWTYANIRQAKESLRLMGILYDWDREVTTCEPEYYRWNQWIFLKMWEKGLAYRAKGLVNWCP 160 (878)
T ss_dssp CSSHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHTTCCCCGGGCCBTTSHHHHHHHHHHHHHHHHTTCEEEEEEEEEEET
T ss_pred cccHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHhCCccCcCCCeecCCHHHHHHHHHHHHHHHHCCCEEEcceeEEEeC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCcccCchhhccCcccc-CCCCeEEeeccccchhhhhhhhHhhccCCCCCCchHHHHHHHhhhccCCCceEEEEEecCC
Q 002217 223 ALGTVLANEEVVDGVSER-GGHPVIRKPMRQWMLKITEYADRLLDDLDDLDWPESVKEMQRNWIGRSEGAEMDFRVLDSD 301 (952)
Q Consensus 223 ~~~t~ls~~Ev~~~~~~~-~~~~~~~~~~~~~~~~i~~y~~~l~~~l~~~~~p~~~~~~~~~~i~~s~~~~v~f~~~~~~ 301 (952)
.|+|+||++||++|.|++ ||.++++++++||||+|++|+++|+++++.++||+++++||++|||+|+|++|+|++.+
T Consensus 161 ~~~t~La~~ev~~g~~~~~~~~~~~~~~~~~~f~~l~~~~~~L~~~l~~~~~p~~~~~~~~~wi~~s~g~~v~f~~~~-- 238 (878)
T 2v0c_A 161 KCQTVLANEQVVEGRCWRHEDTPVEKRELEQWYLRITAYAERLLKDLEGLNWPEKVKAMQRAWIGRSEGAEILFPVEG-- 238 (878)
T ss_dssp TTTEEECGGGEETTEESSCTTCBCEEEEEEEEEECGGGGHHHHHHTTTTCBSCHHHHHHHHHHHCEEEEEEEEEEBTT--
T ss_pred CCCCCcCHHHHhcCCCcccCCCceEEEecceeeEecchhHHHHHHHhhhcCCCHHHHHHHHHHhccccCceEEEEecC--
Confidence 999999999999999999 99999999999999999999999999999989999999999999999999999999943
Q ss_pred CCccCcEEEEecCCcchhccccEEEECCCCccchhhccccchHHHHHHHHHHhccchhhHhhhhhcccccccceEEecCC
Q 002217 302 GQERDIKITVYTTRPDTIFGATYLVVAPEHPLLSSLVSTTQSQNIEEYKNLASRKSDLERTELQKEKTGVFSGCYARNPA 381 (952)
Q Consensus 302 ~~~~~~~i~i~TT~P~Tl~g~~~v~v~p~~~y~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~P~ 381 (952)
.+.+|+|||||||||||++||+|||+|+|+..+...+....+++|++.+..++.+++.....++.|.|+|.++.||+
T Consensus 239 ---~~~~l~v~TTrP~Tl~g~~~vav~pe~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~g~~~~~P~ 315 (878)
T 2v0c_A 239 ---KEVRIPVFTTRPDTLFGATFLVLAPEHPLTLELAAPEKREEVLAYVEAAKRKTEIERQAEGREKTGVFLGAYALNPA 315 (878)
T ss_dssp ---SSCEEEEEESCGGGGGGCCEEEECTTSHHHHHHSCGGGHHHHHHHHHHHHTSCHHHHHCSSSCCCCEEEEEEEECTT
T ss_pred ---CCceEEEEeCCchhhhCcEEEEEcCCCeeeehhccchhHHHHHHHHHHHhhhhhhhhhhccceeeeEecCcEEECCC
Confidence 14789999999999999999999999999988876667777888988887777776643346677889999999999
Q ss_pred CCCcccEEecCcccCCCCCCceEecCCCChhhHHHHHHcCCceeeeecCCCCC-CccccccccccceEEcccCccccccc
Q 002217 382 SGEAIPIWVADYVLGSYGTGAIMAVPAHDTRDHEFALKFDISIHSVVMPDDES-SSQSEKAYTGEGLIVNSSNLISGLDI 460 (952)
Q Consensus 382 ~~~~~pv~~~~~V~~~~GTG~V~~~Pah~~~D~~~~~~~~L~i~~vv~~~~~~-~~~~~~~y~~~g~l~~~~~~~~~~~~ 460 (952)
+|+++|||.++||++++|||+||+|||||++||++|++||||++++|+++++. ..+..+.|+++|+|+|+. .+
T Consensus 316 ~~~~ipi~~~~~V~~~~GTG~V~~~PaHd~~D~~~~~k~~L~i~~vi~~~~~~~~~~~~~~~~~~g~~~ns~------~~ 389 (878)
T 2v0c_A 316 TGERIPIWTADYVLFGYGTGAIMAVPAHDQRDYEFARKFGLPIKKVIERPGEPLPEPLERAYEEPGIMVNSG------PF 389 (878)
T ss_dssp TCCEEEEEECTTSCTTSTTSEEEECTTTCHHHHHHHHHHTCCCCCCEECSSSCCCSSCSSCCCSCCEECSSG------GG
T ss_pred CCCEeEEEEeCcccCCCCCceEEeCCCCCHHHHHHHHHcCCCceeeeCCCCccccccccccccCCeeEecCC------CC
Confidence 99999999999999999999999999999999999999999999999874311 111246788899998876 49
Q ss_pred CCCCHHHHHHHHHHHHHHcCCCcceecccCCceeecccCCCCcccCceEeCCCCceeecCCCCcCCCCCcccccC-CCCC
Q 002217 461 NGLSCQEATSKVIEWAEKTGNGKKKVNYKLRDWLFARQRYWGEPIPVVFLDGTGETVPLHEAELPLTLPELDDFT-PTGT 539 (952)
Q Consensus 461 ~gl~~~~a~~~ii~~l~~~~~~~~~~~~~l~DW~ISRQR~WG~PIPv~~~~~~~~~~~~~~~~l~v~lp~~~~~~-~~G~ 539 (952)
+||.+.+|+++|+++|++.|.+++.++|++||||||||||||+|||+|||++| +.+++++++||+.||++.++. +.|.
T Consensus 390 ~Gl~~~eA~~~Ii~~L~~~g~~~~~v~~rlrDW~ISRQR~WG~PIPi~~~~~~-~~v~v~~~~lpv~lp~~~~~~~~~~~ 468 (878)
T 2v0c_A 390 DGTESEEGKRKVIAWLEEKGLGKGRVTYRLRDWLISRQRYWGTPIPMVHCEAC-GVVPVPEEELPVLLPDLKDVEDIRPK 468 (878)
T ss_dssp TTCBHHHHHHHHHHHHHHHTSEEEEEEESCCCEECEESCSSSEECCEEEETTT-EEEECCGGGCCCCCCCCCCHHHHSCS
T ss_pred CCcCHHHHHHHHHHHHHHCCCCCCceEEecccchhhcccccCCcccEEEECCC-CeEecCHHHccccccchhhhhccccC
Confidence 99999999999999999999999999999999999999999999999999876 477889999999999888765 6676
Q ss_pred CCCCCccccccccccccCCCCCccccCCCccccccccchhheecCCCCchhHhhhhhhhcCCCceeEecCchhhHHHHHH
Q 002217 540 GEPPLSKAVSWVQTTEHSSGKPARRETSTMPQWAGSCWYYLRFMDPKNSKELVDKTKERYWSPVDVYVGGAEHAVLHLLY 619 (952)
Q Consensus 540 ~~~~l~~~~~w~~~~~~~~g~~~~re~d~lD~WfdSswy~~~~~~p~~~~~~~~~~~~~~w~PvDlyv~G~D~~~~HLly 619 (952)
|.+|+..+++|+++.||.||++++||+|||||||||||||++|++|++++.+++++..+||||+|+|+||+||+++||+|
T Consensus 469 g~~pl~~~~~~~~~~cp~cg~~~~retDtmDtwfdSsw~~~~~~~p~~~~~~~~~~~~~~~~P~D~yi~G~d~~ilhl~y 548 (878)
T 2v0c_A 469 GKSPLEAHPEFYETTCPKCGGPAKRDTDTMDTFFDSSWYYLRYTDPHNDRLPFDPEKANAWMPVDQYIGGVEHAVLHLLY 548 (878)
T ss_dssp SSCGGGGCHHHHEEECTTTCSEEEECCCEECHHHHHTSHHHHTTSTTCSSSSCCHHHHHHHCSBSEEECCGGGTTTHHHH
T ss_pred CCChhhhhHhhcCCcCCCCCCcceeccccccccccccchhhhccCccccccccCHHHHccCCCCeEEEechHHHHHHHHH
Confidence 77899999999999999999999999999999999999999999999988888887779999999999999999999999
Q ss_pred HHHHHHHHHHhcCcCCCCcchhhhhhceeccccceeEEecCCCc----cccCCCCCcccccccccCccccccccCCceee
Q 002217 620 ARFWHKVLYDIGVVSTKEPFKCVINQGIILGEMQYMVCKDVDGS----YISADSTDTLGEYEQESIPEEKVMKSGDFFVM 695 (952)
Q Consensus 620 ~Rfw~~~L~~~~~~~~~~PFk~l~~~G~vl~~~~y~~~~d~~g~----~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~vl 695 (952)
+||||++|+++|++.+++||++|++||||++++ |++.+|. |++.+. .........|.+.+...++.+.+
T Consensus 549 ~r~~~~~l~~~g~~~~~~Pfk~l~~~G~vl~~~----~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~ 621 (878)
T 2v0c_A 549 SRFFTKFLHDLGMVKVEEPFQGLFTQGMVLAWT----DFGPVEVEGSVVRLPEP---TRIRLEIPESALSLEDVRKMGAE 621 (878)
T ss_dssp HHHHHHHHHHTTSCSCSCSBSBEECCCCEEEEE----EEEEEEEETTEEECCHH---HHHHHTCSCSEEEHHHHHHTTCE
T ss_pred HHHHHHHHHHhhcccCCCchHhheecceEeccc----eeccccccccceecccc---ccccccccCchhhhhccccccce
Confidence 999999999999999999999999999999984 4443332 121000 00000011122211111111111
Q ss_pred c---cCcchhhcccccccccCCCCCCChhhHHhhhCchhhhhhhhhcCCCCCCCCCChhhHHHHHHHHHHHHHHHhccCC
Q 002217 696 K---DNPNIRLIARAHKMSKSRGNVVNPDDVVTEYGADSLRLYEMFMGPFRDSKTWNTSGIEGVHRFLGRMWRLIVGSSL 772 (952)
Q Consensus 696 ~---~~~~~~v~~~g~KMSKSkGNvV~P~eii~~YGaDalRl~ll~~~~~~~~~~~s~~~i~~~~r~l~~l~~~~~~~~~ 772 (952)
. +++ ..+....+|||||+||+|+|.++|++||||++|||+|++++++++.+|+++.++++.||++|+|+++.....
T Consensus 622 ~~~~~~G-~~~~~~~~KMSKSkGNvVdP~diI~~yGADalRl~ll~~~~~~~D~~fs~~~v~~~~~~l~Rl~n~~~~~~~ 700 (878)
T 2v0c_A 622 LRPHEDG-TLHLWKPAVMSKSKGNGVMVGPFVKEQGADIARITILFAAPPENEMVWTEEGVQGAWRFLNRIYRRVAEDRE 700 (878)
T ss_dssp EEECTTS-SEEEEEEEECSGGGTCCCBHHHHHHHSCHHHHHHHHHHHSCTTSCEEECHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred eeccCCC-CchhhhHHHhhccCCCcccHHHHHHHcCccHHHHHHhccCCCCCCceeCHHHHHHHHHHHHHHHHHHHHHHh
Confidence 1 110 001112299999999999999999999999999999998999999999999999999999999998742110
Q ss_pred C-CCCCCCCccCCCCCChHHHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHhccc------chhHHHHHHHHHHhC
Q 002217 773 P-DGTFKGGTVVNDEEPTLEQLCTLHKCIAKVTEEIEGTRFNTGISAMMEFINAAYKWE------KHPRKIIEPFILLLA 845 (952)
Q Consensus 773 ~-~~~~~~~~~~~~~~~d~~~l~~l~~~i~~v~~~~e~~~f~~ai~~l~~f~~~~~~~~------~~~~~vL~~l~~LLa 845 (952)
. +..............|+++++++++++++|+++|++|+|++|++.+|+|++.+++|. ..++++|+.+++||+
T Consensus 701 ~~~~~~~~~~~~~l~~~D~~ll~~l~~~i~~v~~~~e~~~f~~Ai~~l~~f~~~l~k~~~~~~~~~~l~~~l~~l~~LLa 780 (878)
T 2v0c_A 701 ALLETSGVFQAEALEGKDRELYGKLHETLKKVTEDLEALRFNTAIAALMEFLNALYEYRKDRPVTPVYRTAIRYYLQMLF 780 (878)
T ss_dssp HHHTCCCCCCGGGCCHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHCCSCHHHHHHHHHHHHHHT
T ss_pred cccccccccCcccCCHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHhhhcccchhHHHHHHHHHHHHHHHc
Confidence 0 000000001112345889999999999999999999999999999999999998873 257899999999999
Q ss_pred CcchhHHHHHHHHcCCCCCccccCCCCCCccccCCCceEEeEEEeceeEEEEEecCCCCHHHHHHHHccCHHHHhhhCCC
Q 002217 846 PYAPHMSEELWFRLGHSNSLAYESFPKANPDYLKDSTIVLPIQINGKTRGTIQVEEGCSEEEAFKLASLDEKLSKFLDGK 925 (952)
Q Consensus 846 Pf~P~iaEElw~~L~~~~sV~~~~WP~~~~~~l~~~~i~l~vqVngk~r~~i~v~~~~s~e~~~~~~~~~~~~~~~l~gk 925 (952)
|||||+|||||+.|+ .+||+.++||+++++++.++.+++++|||||+|+.+++++++++++++++++++++++++|+||
T Consensus 781 Pf~P~~aEElw~~Lg-~~sv~~~~wP~~d~~~l~~~~~~~~vqvngkvR~~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~ 859 (878)
T 2v0c_A 781 PFAPHLAEELWHWFW-PDSLFEAGWPELDEKALEKDVVEVAVQVNGAVAGTIHIPKDAPLEVARAEALKVRNVRAHLEGK 859 (878)
T ss_dssp TTSHHHHHHHHHHHC-SSCGGGSCCCCCCGGGGC----------------------------------------------
T ss_pred ccchHHHHHHHHHcC-CCceeecCCCCCCHHHHHHHHHHHHHhhHHHHHHHcccCcCCCHHHHHHHHhcCHHHHHHhCCC
Confidence 999999999999999 7899999999999998888999999999999999999999999999999999999999999999
Q ss_pred CeEEEEEeCCcEEEEEec
Q 002217 926 SIKKRIYVPGRILNVILD 943 (952)
Q Consensus 926 ~i~kvi~vp~kiin~v~~ 943 (952)
+|+|+|+|||||||||++
T Consensus 860 ~~~k~i~v~~~~vn~v~~ 877 (878)
T 2v0c_A 860 EVVKEIYVPGKILNLVVR 877 (878)
T ss_dssp ------------------
T ss_pred CcEEEEEECCCEEEEEeC
Confidence 999999999999999985
No 3
>1gax_A Valrs, valyl-tRNA synthetase; protein-RNA complex, rossmann fold, coiled coil, riken structural genomics/proteomics initiative, RSGI; HET: VAA; 2.90A {Thermus thermophilus} SCOP: a.2.7.3 a.27.1.1 b.51.1.1 c.26.1.1 PDB: 1ivs_A* 1iyw_A
Probab=100.00 E-value=5.4e-128 Score=1189.14 Aligned_cols=610 Identities=27% Similarity=0.445 Sum_probs=517.0
Q ss_pred cccCCChhhhhHHHHHHHHHcCCCCCCCCCCCCCCcEEEEcCCCCCCCCCCCCchhHHHHHHHHHHHHHHHcCCcccccc
Q 002217 60 VKRAYPFHEIEPKWQSYWENNRTFRTPDEIDTSKPKFYVLDMFPYPSGAGLHVGHPLGYTATDILARLKRMQGYNVLHPM 139 (952)
Q Consensus 60 ~~~~y~~~~iE~k~~~~W~~~~~f~~~~~~~~~k~kf~i~~~~Pypng~~lHiGH~~~~~~~Di~~Ry~r~~G~~V~~~~ 139 (952)
+++.|||.++|++||++|++ ++|+... +.++++|+|++||||+||. |||||+++++++|+++||+||+||+|+|++
T Consensus 3 ~~~~y~~~~~E~~~~~~W~~-~~f~~~~--~~~~~~f~i~~ppPy~nG~-lHiGHa~~~~l~Dii~Ry~rm~G~~vl~~~ 78 (862)
T 1gax_A 3 LPKAYDPKSVEPKWAEKWAK-NPFVANP--KSGKPPFVIFMPPPNVTGS-LHMGHALDNSLQDALIRYKRMRGFEAVWLP 78 (862)
T ss_dssp CCSSCCGGGTHHHHHHHHHH-SCCCCCT--TCCSCEEEEECCCCBSSSC-CCHHHHHHHHHHHHHHHHHHTTTSEEEEEC
T ss_pred CccCCChHHHHHHHHHHHHh-CCCccCc--CCCCCcEEEEcCCCCCCCC-cchhhhHHHHHHHHHHHHHHhCCCcccccc
Confidence 56789999999999999999 9999873 5678999999999999998 999999999999999999999999999999
Q ss_pred cccccChHHHHHHHH----hCCCch------------HHHHHHHHHHHHHHHHcCCccccCCcccCCChhHHHHHHHHHH
Q 002217 140 GWDAFGLPAEQYAIE----TGTHPK------------ITTLRNINRFRTQLKSLGFSYDWNREISTIEPAYYKWTQWIFL 203 (952)
Q Consensus 140 G~D~~Glpie~~a~~----~g~~~~------------~~~~~~~~~~~~~l~~lgi~~Dw~~~~~T~~~~~~~~v~~~f~ 203 (952)
||||||+|+|.++++ .|+++. +|+.++++.|++||++||+++||+|+|+||||.|+++|+|+|.
T Consensus 79 G~D~~Glp~e~~vek~l~~~g~~~~~~~~~~f~~~~~~~~~~~~~~~~~q~~rlG~s~Dw~r~~~T~d~~~~~~v~~~F~ 158 (862)
T 1gax_A 79 GTDHAGIATQVVVERLLLKEGKTRHDLGREKFLERVWQWKEESGGTILKQLKRLGASADWSREAFTMDEKRSRAVRYAFS 158 (862)
T ss_dssp EEBCCTHHHHHHHHTTTTTTTSCCSCCCTTHHHHHHHHHHHHHHHHHHHHHHHTTCCCCGGGCEETTSHHHHHHHHHHHH
T ss_pred ccCCCCcHHHHHHHHHHHHcCCChHHcCHHHHHHHHHHHHHHHHHHHHHHHHHhCccccCCCCcccCCHHHHHHHHHHHH
Confidence 999999999988874 466543 6789999999999999999999999999999999999999999
Q ss_pred HHHHCCceeeeccccccCCCCCcccCchhhccCccccCCCCeEEeeccccchhhhhhhhHhhccCCCCCCchHHHHHHHh
Q 002217 204 QLLKRGLAYQAEVPVNWCPALGTVLANEEVVDGVSERGGHPVIRKPMRQWMLKITEYADRLLDDLDDLDWPESVKEMQRN 283 (952)
Q Consensus 204 ~L~~kGliy~~~~~v~wc~~~~t~ls~~Ev~~~~~~~~~~~~~~~~~~~~~~~i~~y~~~l~~~l~~~~~p~~~~~~~~~ 283 (952)
+|+++||||++.++|+|||.|+|+||++||++. +.
T Consensus 159 ~L~~kGliYrg~~~v~wcp~~~T~Lsd~EV~~~--e~------------------------------------------- 193 (862)
T 1gax_A 159 RYYHEGLAYRAPRLVNWCPRCETTLSDLEVETE--PT------------------------------------------- 193 (862)
T ss_dssp HHHTTSSEEEECCEEEEETTTTEEECGGGEEEC--CE-------------------------------------------
T ss_pred HHHHCCCEEecccccccCCCcCccccccccccc--cc-------------------------------------------
Confidence 999999999999999999999999999999742 11
Q ss_pred hhccCCCceEEEEEecCCCCccCcEEEEecCCcchhccccEEEECCCCccchhhccccchHHHHHHHHHHhccchhhHhh
Q 002217 284 WIGRSEGAEMDFRVLDSDGQERDIKITVYTTRPDTIFGATYLVVAPEHPLLSSLVSTTQSQNIEEYKNLASRKSDLERTE 363 (952)
Q Consensus 284 ~i~~s~~~~v~f~~~~~~~~~~~~~i~i~TT~P~Tl~g~~~v~v~p~~~y~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~ 363 (952)
.+.+++|+|++.+. .+|+|||||||||+|++||||||+++. |
T Consensus 194 ---~g~~~~v~f~~~~~------~~l~v~TTrPeTl~g~~avav~P~~~r---------------y-------------- 235 (862)
T 1gax_A 194 ---PGKLYTLRYEVEGG------GFIEIATVRPETVFADQAIAVHPEDER---------------Y-------------- 235 (862)
T ss_dssp ---EEEEEEEECCCSSS------CCCEEEESCSGGGTTCCCEEECSSCCT---------------T--------------
T ss_pred ---cceEEEEEEEecCC------CEEEEEeCCccccccceEEEECCCccH---------------H--------------
Confidence 12345889998531 589999999999999999999999853 1
Q ss_pred hhhcccccccceEEecCCCCCcccEEecCcccCCCCCCceEecCCCChhhHHHHHHcCCceeeeecCCCCCCcccccccc
Q 002217 364 LQKEKTGVFSGCYARNPASGEAIPIWVADYVLGSYGTGAIMAVPAHDTRDHEFALKFDISIHSVVMPDDESSSQSEKAYT 443 (952)
Q Consensus 364 ~~~~~~~~l~g~~~~~P~~~~~~pv~~~~~V~~~~GTG~V~~~Pah~~~D~~~~~~~~L~i~~vv~~~~~~~~~~~~~y~ 443 (952)
..|.|+++.||++|+.+||+.++||++++|||+||+|||||++||++|++||||++++++.+ |.+.+..
T Consensus 236 ------~~l~G~~~~~P~~~~~ipii~~~~V~~~~GTG~V~~~Pahd~~D~~~~~~~~L~~~~~id~~-G~~~~~~---- 304 (862)
T 1gax_A 236 ------RHLLGKRARIPLTEVWIPILADPAVEKDFGTGALKVTPAHDPLDYEIGERHGLKPVSVINLE-GRMEGER---- 304 (862)
T ss_dssp ------CSCTTCCCBCTTCCCBCCEEECTTCCTTSSSSEEECCGGGCHHHHHHHHHTTCCCCCSBCTT-SBBCSSS----
T ss_pred ------HHHcCCEEECCCCCCeeeEEeccccccCCCCcceEecCCCCchHHHHHHHcCCCccceeCCC-Ccccccc----
Confidence 13789999999999999999999999999999999999999999999999999999999876 3222111
Q ss_pred ccceEEcccCcccccccCCCCHHHHHHHHHHHHHHcCCCcc---------------------------------------
Q 002217 444 GEGLIVNSSNLISGLDINGLSCQEATSKVIEWAEKTGNGKK--------------------------------------- 484 (952)
Q Consensus 444 ~~g~l~~~~~~~~~~~~~gl~~~~a~~~ii~~l~~~~~~~~--------------------------------------- 484 (952)
....+.||...+|++.|+++|++.|.+.+
T Consensus 305 ------------~~g~~~Gl~~~~a~~~iv~~L~~~g~l~~~~~~~h~~p~c~R~~~~i~~~~~~qWFv~~~~~~~~~l~ 372 (862)
T 1gax_A 305 ------------VPEALRGLDRFEARRKAVELFREAGHLVKEEDYTIALATCSRCGTPIEYAIFPQWWLRMRPLAEEVLK 372 (862)
T ss_dssp ------------SCTTTSSSBSSHHHHHHHHHHHTTTCEEEEEEEEECCEEETTTCSBCCEEECCEEEECHHHHHHHHHH
T ss_pred ------------CCcccCCcCHHHHHHHHHHHHHhCCCeeeeccccccCCeecCCCCeEEEEecceEEEEhHHHHHHHHH
Confidence 00248889999999999999998876421
Q ss_pred -----eecc--------------cCCceeecccCCCCcccCceEeCCCCceeecCCCCcCCCCCcccccCCCCCCCCCCc
Q 002217 485 -----KVNY--------------KLRDWLFARQRYWGEPIPVVFLDGTGETVPLHEAELPLTLPELDDFTPTGTGEPPLS 545 (952)
Q Consensus 485 -----~~~~--------------~l~DW~ISRQR~WG~PIPv~~~~~~~~~~~~~~~~l~v~lp~~~~~~~~G~~~~~l~ 545 (952)
.+++ +++||||||||+||+|||+|+|++|+.+ .+...+++ .. +.
T Consensus 373 ~v~~~~~~~~P~~~~~~~~~wl~~l~DW~ISRqr~WG~pIP~w~~~~~~~i-~v~~~~~l---~~----------~~--- 435 (862)
T 1gax_A 373 GLRRGDIAFVPERWKKVNMDWLENVKDWNISRQLWWGHQIPAWYCEDCQAV-NVPRPERY---LE----------DP--- 435 (862)
T ss_dssp HHHHTCCEESSSHHHHHHHHHHHTCCCCCCBCCCSSSCCCCCEEETTTCCE-ECCCGGGT---TC----------CC---
T ss_pred HHHcCCceEcCHHHHHHHHHHHhcccceeEecccCCCcccCceecCCCCEE-EEeccccc---cc----------cc---
Confidence 1121 6899999999999999999999887754 33332210 00 00
Q ss_pred cccccccccccCCCC-CccccCCCcccccccc-chhheecCCCCchhHhhhhhhhcCCCceeEecCchhhHHHHHHHHHH
Q 002217 546 KAVSWVQTTEHSSGK-PARRETSTMPQWAGSC-WYYLRFMDPKNSKELVDKTKERYWSPVDVYVGGAEHAVLHLLYARFW 623 (952)
Q Consensus 546 ~~~~w~~~~~~~~g~-~~~re~d~lD~WfdSs-wy~~~~~~p~~~~~~~~~~~~~~w~PvDlyv~G~D~~~~HLly~Rfw 623 (952)
..|+.||+ .++|++|||||||||+ |||+++++|.+..+ .++|||+|+|++|+||+ |||
T Consensus 436 -------~~~~~~g~~~~~r~~DvlDtWfdS~~~~~~~~~~p~~~~~------~~~~~P~d~~v~G~Dii-------~~W 495 (862)
T 1gax_A 436 -------TSCEACGSPRLKRDEDVFDTWFSSALWPLSTLGWPEETED------LKAFYPGDVLVTGYDIL-------FLW 495 (862)
T ss_dssp -------CSCTTTCCSCEEECCCCBCHHHHHTSCTTGGGTTTSCCHH------HHHSCSBSCEEEEGGGT-------TTT
T ss_pred -------hhhhhcCchheecCCcccceeeccCCcchhhccCCCchHH------HHhhCCceEEecCcccc-------ccH
Confidence 15678886 7999999999999997 99999999976533 26789999999999986 888
Q ss_pred HHHHHHhcC-cCCCCcchhhhhhceeccccceeEEecCCCccccCCCCCcccccccccCccccccccCCceeeccCcchh
Q 002217 624 HKVLYDIGV-VSTKEPFKCVINQGIILGEMQYMVCKDVDGSYISADSTDTLGEYEQESIPEEKVMKSGDFFVMKDNPNIR 702 (952)
Q Consensus 624 ~~~L~~~~~-~~~~~PFk~l~~~G~vl~~~~y~~~~d~~g~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~vl~~~~~~~ 702 (952)
+.+|+.+++ ..+.+||++|++||||++.
T Consensus 496 ~a~~~~~~~~~~g~~Pfk~v~~hG~vld~--------------------------------------------------- 524 (862)
T 1gax_A 496 VSRMEVSGYHFMGERPFKTVLLHGLVLDE--------------------------------------------------- 524 (862)
T ss_dssp HHHHHHHHHHHSSSCSBSEEEEECCEECT---------------------------------------------------
T ss_pred HHHHHHHHHHhcCCCcccEEEEeeeEEcC---------------------------------------------------
Confidence 887777665 3557899999999999854
Q ss_pred hcccccccccCCCCCCChhhHHhhhCchhhhhhhhhcCCCCCCCCCChhhHHHHHHHHHHHHHHH---hccCCCCCCCCC
Q 002217 703 LIARAHKMSKSRGNVVNPDDVVTEYGADSLRLYEMFMGPFRDSKTWNTSGIEGVHRFLGRMWRLI---VGSSLPDGTFKG 779 (952)
Q Consensus 703 v~~~g~KMSKSkGNvV~P~eii~~YGaDalRl~ll~~~~~~~~~~~s~~~i~~~~r~l~~l~~~~---~~~~~~~~~~~~ 779 (952)
+|+|||||+||+|+|.++|++||||++|||+++.++++++.+|+++.++++.+|++++||.+ ..+ +.+ +.+
T Consensus 525 ---~G~KMSKSlGNvIdP~dli~~yGaDalR~~ll~~~~~~~D~~fs~~~l~~~~~f~nkl~N~~rf~~~~-~~~--~~~ 598 (862)
T 1gax_A 525 ---KGQKMSKSKGNVIDPLEMVERYGADALRFALIYLATGGQDIRLDLRWLEMARNFANKLYNAARFVLLS-REG--FQA 598 (862)
T ss_dssp ---TSCBCCTTTTCCCCHHHHHHHHCHHHHHHHHHHHCCTTCCEECCHHHHHHHHHHHHHHHHHHHHHHHH-SSS--CCC
T ss_pred ---CCCCccccCCCCCCHHHHHHHcChHHHHHHHHhcCCCCCCCccCHHHHHHHHHHHHHHHHHHHHHHhc-ccC--CCC
Confidence 37999999999999999999999999999999988899999999999999999999998754 222 111 111
Q ss_pred CccCCCCCChHHHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHH-HHhcccc----------------hhHHHHHHHHH
Q 002217 780 GTVVNDEEPTLEQLCTLHKCIAKVTEEIEGTRFNTGISAMMEFIN-AAYKWEK----------------HPRKIIEPFIL 842 (952)
Q Consensus 780 ~~~~~~~~~d~~~l~~l~~~i~~v~~~~e~~~f~~ai~~l~~f~~-~~~~~~~----------------~~~~vL~~l~~ 842 (952)
. .......|+|+++++++++++|+++|++|+|++|++.+++|++ ++.+||. .+.++|+.+++
T Consensus 599 ~-~~~~~~~D~~il~~l~~~~~~v~~a~e~~~f~~A~~~l~~f~~~~~~n~Yie~~k~~l~~~~~~~~~~l~~~l~~~~~ 677 (862)
T 1gax_A 599 K-EDTPTLADRFMRSRLSRGVEEITALYEALDLAQAAREVYELVWSEFCDWYLEAAKPALKAGNAHTLRTLEEVLAVLLK 677 (862)
T ss_dssp C-BCCCCHHHHHHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHTTTTHHHHHHHHHHTTBHHHHHHHHHHHHHHHH
T ss_pred c-cccCCHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHhhHHHHHHcchhhhccHHHHHHHHHHHHHHHHH
Confidence 0 1112345889999999999999999999999999999999995 4555541 23478999999
Q ss_pred HhCCcchhHHHHHHHHcCCCCCccccCCCCCC
Q 002217 843 LLAPYAPHMSEELWFRLGHSNSLAYESFPKAN 874 (952)
Q Consensus 843 LLaPf~P~iaEElw~~L~~~~sV~~~~WP~~~ 874 (952)
||+|||||+|||||+.|+..+|||.+.||+++
T Consensus 678 lL~P~~P~~aEeiw~~L~~~~sv~~~~wP~~~ 709 (862)
T 1gax_A 678 LLHPMMPFLTSELYQALTGKEELALEAWPEPG 709 (862)
T ss_dssp HHTTTSHHHHHHHHHHHHCCSCGGGSCCCCCC
T ss_pred HHhhhhhHHHHHHHHhcCCCCeEEecCCCCCC
Confidence 99999999999999999877899999999987
No 4
>1ffy_A Isoleucyl-tRNA synthetase; protein-RNA complex, metal IONS, editing tRNA synthetase, double-sieve, ligase/RNA, mupiroci; HET: MRC; 2.20A {Staphylococcus aureus} SCOP: a.27.1.1 b.51.1.1 c.26.1.1 PDB: 1qu2_A* 1qu3_A*
Probab=100.00 E-value=4.6e-130 Score=1217.76 Aligned_cols=684 Identities=24% Similarity=0.350 Sum_probs=527.8
Q ss_pred ccccCCChhhhhHHHHHHHHHcCCCCCCCCCCCCCCcEEEEcCCCCCCCCCCCCchhHHHHHHHHHHHHHHHcCCccccc
Q 002217 59 VVKRAYPFHEIEPKWQSYWENNRTFRTPDEIDTSKPKFYVLDMFPYPSGAGLHVGHPLGYTATDILARLKRMQGYNVLHP 138 (952)
Q Consensus 59 ~~~~~y~~~~iE~k~~~~W~~~~~f~~~~~~~~~k~kf~i~~~~Pypng~~lHiGH~~~~~~~Di~~Ry~r~~G~~V~~~ 138 (952)
.++.++++.++|++||++|+++++|+...+.++++++|+|++|||||||. |||||++|++++|+++||+||+||+|+|+
T Consensus 13 ~fpm~~~~~~~E~~~~~~W~~~~~f~~~~~~~~~~~~f~i~~~pPY~nG~-lHiGHa~n~~~~Dii~Ry~rm~G~~v~~~ 91 (917)
T 1ffy_A 13 DFPMRGGLPNKEPQIQEKWDAEDQYHKALEKNKGNETFILHDGPPYANGN-LHMGHALNKILKDFIVRYKTMQGFYAPYV 91 (917)
T ss_dssp CCCSSCCHHHHHHHHHHHHHHTTHHHHHHHHTTTSCBCCEECCCCBSSSC-CCHHHHHHHHHHHHHHHHHHTTTCBCCCC
T ss_pred CCCCCCChHHHhHHHHHHHHHCCCcccchhhccCCCceeeCCCCCCCCCc-chHHHHHHHHHHHHHHHHHHhCCCCCCCc
Confidence 35567999999999999999999998764345688999999999999998 99999999999999999999999999999
Q ss_pred ccccccChHHHHHHHHhCCCc------------hHHHHHHHHHHHHHHHHcCCccccCCcccCCChhHHHHHHHHHHHHH
Q 002217 139 MGWDAFGLPAEQYAIETGTHP------------KITTLRNINRFRTQLKSLGFSYDWNREISTIEPAYYKWTQWIFLQLL 206 (952)
Q Consensus 139 ~G~D~~Glpie~~a~~~g~~~------------~~~~~~~~~~~~~~l~~lgi~~Dw~~~~~T~~~~~~~~v~~~f~~L~ 206 (952)
+||||||+|||++|++.|+++ ++++.++++.|++||++||+++||+++|.||||.|+++++|+|.+|+
T Consensus 92 ~GwD~hGlpiE~~a~k~G~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~rlG~~~Dwd~~~~T~d~~~~~~v~~~F~~l~ 171 (917)
T 1ffy_A 92 PGWDTHGLPIEQALTKKGVDRKKMSTAEFREKCKEFALEQIELQKKDFRRLGVRGDFNDPYITLKPEYEAAQIRIFGEMA 171 (917)
T ss_dssp CEEBCCSHHHHHHHHHHTCCSTTTCHHHHHHHHHHHHHHHHHHHHHHHHTTTCCSCTTSCEETTSHHHHHHHHHHHHHHH
T ss_pred ccCchhhHHHHHHHHHcCCCchhCCHHHHHHHHHHHHHHHHHHHHHHHHHhCeEEccCCCeEcCCHHHHHHHHHHHHHHH
Confidence 999999999999999999876 67899999999999999999999999999999999999999999999
Q ss_pred HCCceeeeccccccCCCCCcccCchhhccCccccCCCCeEEeeccccchhhhhhhhHhhccCCCCCCchHHHHHHHhhhc
Q 002217 207 KRGLAYQAEVPVNWCPALGTVLANEEVVDGVSERGGHPVIRKPMRQWMLKITEYADRLLDDLDDLDWPESVKEMQRNWIG 286 (952)
Q Consensus 207 ~kGliy~~~~~v~wc~~~~t~ls~~Ev~~~~~~~~~~~~~~~~~~~~~~~i~~y~~~l~~~l~~~~~p~~~~~~~~~~i~ 286 (952)
++|+||++.++|+|||.|+|+||++||++.. .
T Consensus 172 ~kGliYr~~~~v~wcp~~~T~Lae~eVey~d------------------------------------------------~ 203 (917)
T 1ffy_A 172 DKGLIYKGKKPVYWSPSSESSLAEAEIEYHD------------------------------------------------K 203 (917)
T ss_dssp HTTCEEEEEEEEEEETTTTEECCGGGEEEEE------------------------------------------------E
T ss_pred HcCCeEecccceeccCCCCcCcchhhhhccc------------------------------------------------c
Confidence 9999999999999999999999999998421 0
Q ss_pred cCCCceEEEEEecCCCC-ccCcEEEEecCCcchhccccEEEECCCCccchhhccccchHHHHHHHHHHhccchhhHh---
Q 002217 287 RSEGAEMDFRVLDSDGQ-ERDIKITVYTTRPDTIFGATYLVVAPEHPLLSSLVSTTQSQNIEEYKNLASRKSDLERT--- 362 (952)
Q Consensus 287 ~s~~~~v~f~~~~~~~~-~~~~~i~i~TT~P~Tl~g~~~v~v~p~~~y~~~~~~~~~~~~~~~y~~~~~~~~~~~~~--- 362 (952)
+|.+++|+|++.+..|. ..+.+++||||||||||||+||+|||+++|+.+.+.++.....+++.+.......+++.
T Consensus 204 ~~~~~~v~f~~~~~~g~~~~~~~~~i~TTrP~Tl~~~~av~v~p~~~Y~~v~~~~~~~i~a~~~~~~~~~~~~~~~~~~~ 283 (917)
T 1ffy_A 204 RSASIYVAFNVKDDKGVVDADAKFIIWTTTPWTIPSNVAITVHPELKYGQYNVNGEKYIIAEALSDAVAEALDWDKASIK 283 (917)
T ss_dssp EEEEEECCBCCCSSTTGGGTTCCBCCEESCGGGSSCCBCCCCCTTCCCCCCCTTTTCCCCCHHHHHHHHTTTTCCSSCCC
T ss_pred cCceEEEEEEecccccccCCCCeEEEEeCCcchhhhceEEEECCCCceEEEEeCCceeehHHHHHHHHHHhcCcccceee
Confidence 35566888888643210 02478999999999999999999999999987665433222223444433333333222
Q ss_pred hhhhcccccccceEEecCCCCCcccEEecCcccCCCCCCceEecCCCChhhHHHHHHcCCceeeeecCCCCCCccccccc
Q 002217 363 ELQKEKTGVFSGCYARNPASGEAIPIWVADYVLGSYGTGAIMAVPAHDTRDHEFALKFDISIHSVVMPDDESSSQSEKAY 442 (952)
Q Consensus 363 ~~~~~~~~~l~g~~~~~P~~~~~~pv~~~~~V~~~~GTG~V~~~Pah~~~D~~~~~~~~L~i~~vv~~~~~~~~~~~~~y 442 (952)
.+...+|..|.|.++.||++++++||+.++||++++|||+||+|||||++||++|++||||++++|+++ |.+++..+
T Consensus 284 ~~~~~~G~~l~g~~~~~P~~~~~~pvi~~~~V~~~~GTG~V~~~Pah~~~D~~~~~~~~L~~~~~vd~~-G~~~~~~~-- 360 (917)
T 1ffy_A 284 LEKEYTGKELEWVVAQHPFLDRESLVINGDHVTTDAGTGCVHTAPGHGEDDYIVGQQYELPVISPIDDK-GVFTEEGG-- 360 (917)
T ss_dssp CCCCCCTTTCTTCCCBCCTTCCSBCCCCCCSSCCSSSCSCCCBCTTSCSHHHHTTTSSSCCCCCCCCSS-SCCCTTCS--
T ss_pred eeeeeecccccCCEEECCCCCCeeeEEeccccccCCCCceeEeCCCCCHHHHHHHHHcCCCeeeeECCC-ceeCCccc--
Confidence 123344557999999999999999999999999999999999999999999999999999999999865 44433322
Q ss_pred cccceEEcccCcccccccCCCCHHHHHHHHHHHHHHcCCCcc----------------ee--------------------
Q 002217 443 TGEGLIVNSSNLISGLDINGLSCQEATSKVIEWAEKTGNGKK----------------KV-------------------- 486 (952)
Q Consensus 443 ~~~g~l~~~~~~~~~~~~~gl~~~~a~~~ii~~l~~~~~~~~----------------~~-------------------- 486 (952)
.+.||.+.+|++.|+++|++.|.... .+
T Consensus 361 ----------------~~~G~~v~~A~~~Ii~~L~~~g~l~~~~~~~hs~p~c~R~~~pv~~r~t~QWFi~~~~lr~~~l 424 (917)
T 1ffy_A 361 ----------------QFEGMFYDKANKAVTDLLTEKGALLKLDFITHSYPHDWRTKKPVIFRATPQWFASISKVRQDIL 424 (917)
T ss_dssp ----------------SCSSSCSSHHHHTTGGGSSHHHHCCCCEEEEEEEEEETTTCCBCEEEEEEEEEECHHHHHHHHH
T ss_pred ----------------ccCCcCHHHHHHHHHHHHHhCCCccccccccccCCEecCCCCEEEEEeccceEeeHHHHHHHHH
Confidence 25555555666666666555443210 00
Q ss_pred ------cc--------------cCCceeecccCCCCcccCceEeCCCCceeecCCCCcCCCCCcccccCCCCCCCCCCcc
Q 002217 487 ------NY--------------KLRDWLFARQRYWGEPIPVVFLDGTGETVPLHEAELPLTLPELDDFTPTGTGEPPLSK 546 (952)
Q Consensus 487 ------~~--------------~l~DW~ISRQR~WG~PIPv~~~~~~~~~~~~~~~~l~v~lp~~~~~~~~G~~~~~l~~ 546 (952)
+| +++||||||||+||+|||+|||++ |.+ +++++ ++..++++ +...|...+.-..
T Consensus 425 ~~i~~~~~~P~~~~~r~~~~l~~~~DW~ISRqr~WG~PIP~~~~~~-g~~-~~~~~-~~~~i~~~--~~~~g~~~W~~~~ 499 (917)
T 1ffy_A 425 DAIENTNFKVNWGKTRIYNMVRDRGEWVISRQRVWGVPLPVFYAEN-GEI-IMTKE-TVNHVADL--FAEHGSNIWFERE 499 (917)
T ss_dssp HHHHTSEESSHHHHHHHHHHHHHCCCEECEESCSSSCBCCCEECTT-SCE-ECCHH-HHHHHHHH--HHHHCTHHHHHSC
T ss_pred HHHhcCcccCHHHHHHHHHHHhcCccceeeccCCcCcccceeeCCC-CCE-ecCHH-HHHHHHHH--hhhcCCcccccCC
Confidence 00 367999999999999999999976 543 34443 22222211 1112221000011
Q ss_pred ccccc--cccccCCCC-CccccCCCccccccc--cchhheecCCCCchhHhhhhhhhcCCCceeEecCchhhHHHHHHHH
Q 002217 547 AVSWV--QTTEHSSGK-PARRETSTMPQWAGS--CWYYLRFMDPKNSKELVDKTKERYWSPVDVYVGGAEHAVLHLLYAR 621 (952)
Q Consensus 547 ~~~w~--~~~~~~~g~-~~~re~d~lD~WfdS--swy~~~~~~p~~~~~~~~~~~~~~w~PvDlyv~G~D~~~~HLly~R 621 (952)
..+|. ...||.||+ .++|++||||||||| +|++.. ..+ .+..||+|+|++|+||+ |
T Consensus 500 ~~~~~~~~~~~~~~g~~~~~~~~D~lD~WfdSg~~~~~~l-~~~-----------~~~~~P~Dl~~~G~D~~-------r 560 (917)
T 1ffy_A 500 AKDLLPEGFTHPGSPNGTFTKETDIMDVWFDSGSSHRGVL-ETR-----------PELSFPADMYLEGSDQY-------R 560 (917)
T ss_dssp HHHHSSTTCCCSSCTTSCCEECCCEECHHHHHHTHHHHTT-TTS-----------TTCCSSBSEEEEEGGGG-------T
T ss_pred HHHhcccccccccCCcccccccCCCcCeecCCCCCHHHHc-CCc-----------hhcCCCceEEEEEeccc-------c
Confidence 22333 247899995 799999999999998 355542 111 02237999999999996 9
Q ss_pred HHHHHH-HHhcCcCCCCcchhhhhhceeccccceeEEecCCCccccCCCCCcccccccccCccccccccCCceeeccCcc
Q 002217 622 FWHKVL-YDIGVVSTKEPFKCVINQGIILGEMQYMVCKDVDGSYISADSTDTLGEYEQESIPEEKVMKSGDFFVMKDNPN 700 (952)
Q Consensus 622 fw~~~L-~~~~~~~~~~PFk~l~~~G~vl~~~~y~~~~d~~g~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~vl~~~~~ 700 (952)
||++++ +....+.+.+||+++++||||++.
T Consensus 561 ~wf~~~l~~s~~~~g~~Pfk~v~~hG~V~d~------------------------------------------------- 591 (917)
T 1ffy_A 561 GWFNSSITTSVATRGVSPYKFLLSHGFVMDG------------------------------------------------- 591 (917)
T ss_dssp THHHHHHHHHHHHHSSCSBSEEEEECCEECT-------------------------------------------------
T ss_pred cHHHHHHHHHHHhhCCCcccceeEeeeEEcC-------------------------------------------------
Confidence 996654 333345678999999999999853
Q ss_pred hhhcccccccccCCCCCCChhhHHhhhCchhhhhhhhhcCCCCCCCCCChhhHHHHHH---HHHHHHHHHhccCCCCCCC
Q 002217 701 IRLIARAHKMSKSRGNVVNPDDVVTEYGADSLRLYEMFMGPFRDSKTWNTSGIEGVHR---FLGRMWRLIVGSSLPDGTF 777 (952)
Q Consensus 701 ~~v~~~g~KMSKSkGNvV~P~eii~~YGaDalRl~ll~~~~~~~~~~~s~~~i~~~~r---~l~~l~~~~~~~~~~~~~~ 777 (952)
+|+|||||+||+|+|.++|++||||++|||+++ ++++++.+|+++.++++.+ +|.|++++++++. . ++
T Consensus 592 -----~G~KMSKSlGNvV~P~dvi~~yGaDalR~~lls-~~~~~D~~fs~~~l~~~~~~~~kl~n~~r~~l~nl-~--~~ 662 (917)
T 1ffy_A 592 -----EGKKMSKSLGNVIVPDQVVKQKGADIARLWVSS-TDYLADVRISDEILKQTSDDYRKIRNTLRFMLGNI-N--DF 662 (917)
T ss_dssp -----TSCCCCSSSSCCCCHHHHHHHTCHHHHHHHHHT-SCTTSCEECCHHHHHHHHHHHHHHHHHHHHHHHTS-T--TC
T ss_pred -----CCcCcccccCCcCChHHHHHhCCHHHHHHHHhc-cCCCCCcccCHHHHHHHHHHHHHHHHHHHHHHhhh-h--cc
Confidence 379999999999999999999999999999997 7889999999999887655 4555556666542 1 12
Q ss_pred CC--Ccc--CCCCCChHHHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHH-HHhcccc---------------------
Q 002217 778 KG--GTV--VNDEEPTLEQLCTLHKCIAKVTEEIEGTRFNTGISAMMEFIN-AAYKWEK--------------------- 831 (952)
Q Consensus 778 ~~--~~~--~~~~~~d~~~l~~l~~~i~~v~~~~e~~~f~~ai~~l~~f~~-~~~~~~~--------------------- 831 (952)
.+ +.. ......|+++++++++++++++++|++|+|++|++.+|+|++ ++++||.
T Consensus 663 ~~~~~~v~~~~l~~~D~~il~~l~~~~~~v~~a~e~~~f~~a~~~l~~f~~~~l~~~Yl~~~k~rl~~~~~~~~~r~~~~ 742 (917)
T 1ffy_A 663 NPDTDSIPESELLEVDRYLLNRLREFTASTINNYENFDYLNIYQEVQNFINVELSNFYLDYGKDILYIEQRDSHIRRSMQ 742 (917)
T ss_dssp CHHHHCCCGGGSCHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHCCCCCCHHHHHHHHHTTSCTTCHHHHHHH
T ss_pred CcccccCCccccCHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHHHHHHhcchhhhccCCCcHHHHHHH
Confidence 11 001 112345788999999999999999999999999999999998 5655431
Q ss_pred -hhHHHHHHHHHHhCCcchhHHHHHHHHcCC--CCCccccCCCCCCc--cccCCCceEEeEEEecee
Q 002217 832 -HPRKIIEPFILLLAPYAPHMSEELWFRLGH--SNSLAYESFPKANP--DYLKDSTIVLPIQINGKT 893 (952)
Q Consensus 832 -~~~~vL~~l~~LLaPf~P~iaEElw~~L~~--~~sV~~~~WP~~~~--~~l~~~~i~l~vqVngk~ 893 (952)
.++.+|+.+++||+|||||+|||||+.|+. .+|||++.||++++ ..+ ++.++..++|++++
T Consensus 743 ~~l~~~l~~l~~lLaP~~P~~aEeiw~~l~~~~~~sv~~~~wP~~~~~~~~l-~~~~~~~~~v~~~v 808 (917)
T 1ffy_A 743 TVLYQILVDMTKLLAPILVHTAEEVWSHTPHVKEESVHLADMPKVVEVDQAL-LDKWRTFMNLRDDV 808 (917)
T ss_dssp HHHHHHHHHHHHHHTTTSHHHHHHHHTTSTTCSSSSGGGSCCCCCCCCCHHH-HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcccccHHHHHHHHHcccCCCCCeEecCCCCCCcchHHH-HHHHHHHHHHHHHH
Confidence 134789999999999999999999999985 57999999999875 111 22344445555433
No 5
>1ile_A Ilers, isoleucyl-tRNA synthetase; aminoacyl-tRNA synthetase, riken structural genomics/proteom initiative, RSGI, structural genomics; 2.50A {Thermus thermophilus} SCOP: a.27.1.1 b.51.1.1 c.26.1.1 PDB: 1jzq_A* 1jzs_A*
Probab=100.00 E-value=5.2e-128 Score=1197.00 Aligned_cols=669 Identities=25% Similarity=0.406 Sum_probs=537.8
Q ss_pred cCCChhhhhHHHHHHHHHcCCCCCCCCCCCCCCcEEEEcCCCCCCCCCCCCchhHHHHHHHHHHHHHHHcCCcccccccc
Q 002217 62 RAYPFHEIEPKWQSYWENNRTFRTPDEIDTSKPKFYVLDMFPYPSGAGLHVGHPLGYTATDILARLKRMQGYNVLHPMGW 141 (952)
Q Consensus 62 ~~y~~~~iE~k~~~~W~~~~~f~~~~~~~~~k~kf~i~~~~Pypng~~lHiGH~~~~~~~Di~~Ry~r~~G~~V~~~~G~ 141 (952)
.+||+.++|++||++|+++++|+...+.+.++++|++++|||||||. |||||+++++++|+++||+||+||+|++++||
T Consensus 6 ~~~~~~~~E~~~~~~W~~~~~f~~~~~~~~~~~~f~i~~~pPy~nG~-lHiGH~~~~~~~D~i~R~~rm~G~~v~~~~G~ 84 (821)
T 1ile_A 6 GEPNFPKLEEEVLAFWKREKIFQKSVENRKGGPRYTVYEGPPTANGL-PHVGHAQARSYKDLFPRYKTMRGYYAPRRAGW 84 (821)
T ss_dssp CCCCHHHHHHHHHHHHHHTTHHHHHHHHTTTSCBCCBCCCCCCTTSC-CCTTHHHHHHHHHHHHHHHHHTTCBCCCEEEE
T ss_pred cCCCHHHHHHHHHHHHHHCCCcccChhhcCCCCcEEEecCCCCCCCC-CchhhhHhHHHHHHHHHHHHhcCCcccccccc
Confidence 67999999999999999999998764334678999999999999998 99999999999999999999999999999999
Q ss_pred cccChHHHHHHHHh-CCCc----------------hHHHHHHHHHHHHHHHHcCCccccCCcccCCChhHHHHHHHHHHH
Q 002217 142 DAFGLPAEQYAIET-GTHP----------------KITTLRNINRFRTQLKSLGFSYDWNREISTIEPAYYKWTQWIFLQ 204 (952)
Q Consensus 142 D~~Glpie~~a~~~-g~~~----------------~~~~~~~~~~~~~~l~~lgi~~Dw~~~~~T~~~~~~~~v~~~f~~ 204 (952)
||||+|||++|++. |.++ ++++.++++.|+++|++||+++||+++++||||.|+++++|+|.+
T Consensus 85 D~~Glpie~~a~k~l~~~~~~~~~~~g~~~f~~~~~~~~~~~~~~~~~~~~~lg~~~dwd~~~~T~d~~~~~~v~~~f~~ 164 (821)
T 1ile_A 85 DTHGLPVELEVEKKLGLKSKREIEAYGIERFNQACRESVFTYEKEWEAFTERIAYWVDLEDAYATLEPTYIESIWWSLKN 164 (821)
T ss_dssp CCCHHHHHHHHHHHTTCCSHHHHHHHCHHHHHHHHHHHTTTTHHHHTTHHHHTTCCCEEEEEEETTSHHHHHHHHHHHHH
T ss_pred cCCCchHHHHHHHHhcccccchHhhcCHHHHHHHHHHHHHHHHHHHHHHHHHhCCeEccCCCeEECCHHHHHHHHHHHHH
Confidence 99999999999985 8764 467788899999999999999999999999999999999999999
Q ss_pred HHHCCceeeeccccccCCCCCcccCchhhccCccccCCCCeEEeeccccchhhhhhhhHhhccCCCCCCchHHHHHHHhh
Q 002217 205 LLKRGLAYQAEVPVNWCPALGTVLANEEVVDGVSERGGHPVIRKPMRQWMLKITEYADRLLDDLDDLDWPESVKEMQRNW 284 (952)
Q Consensus 205 L~~kGliy~~~~~v~wc~~~~t~ls~~Ev~~~~~~~~~~~~~~~~~~~~~~~i~~y~~~l~~~l~~~~~p~~~~~~~~~~ 284 (952)
|+++|+||++.++|+|||.|+|+||++||++|+++++
T Consensus 165 L~~~Gliy~~~~~v~wcp~~~t~Lad~ev~~G~~~~~------------------------------------------- 201 (821)
T 1ile_A 165 LFDRGLLYRDHKVVPYCPRCGTPLSSHEVALGYKEIQ------------------------------------------- 201 (821)
T ss_dssp HHHTTCEEEECCEEEEETTTTEECCHHHHHHTEEEEE-------------------------------------------
T ss_pred HHHcCCeeecCcceEecCCCCCcccHhHhhcCccccc-------------------------------------------
Confidence 9999999999999999999999999999976665543
Q ss_pred hccCCCceEEEEEecCCC-CccCcEEEEecCCcchhccccEEEECCCCccchhhccccc----hHHHHHHHHHHhccchh
Q 002217 285 IGRSEGAEMDFRVLDSDG-QERDIKITVYTTRPDTIFGATYLVVAPEHPLLSSLVSTTQ----SQNIEEYKNLASRKSDL 359 (952)
Q Consensus 285 i~~s~~~~v~f~~~~~~~-~~~~~~i~i~TT~P~Tl~g~~~v~v~p~~~y~~~~~~~~~----~~~~~~y~~~~~~~~~~ 359 (952)
+.+++|+|++.+... ...+.+|+||||||||||||+||||||+++|+.+...++. ...++.+.. ...
T Consensus 202 ---~~~~~v~f~~~~~~~~~~~~~~l~v~TTrP~Tl~g~~av~v~p~~~y~~~~~~~~~~i~a~~~~~~~~~-----~~~ 273 (821)
T 1ile_A 202 ---DPSVYVRFPLKEPKKLGLEKASLLIWTTTPWTLPGNVAAAVHPEYTYAAFQVGDEALILEEGLGRKLLG-----EGT 273 (821)
T ss_dssp ---EEEEEEEEEBSSGGGGTCSSEEEEEEESCGGGGGGCCCEEECTTSCEEEEEETTEEEEEETTHHHHHTC-----TTS
T ss_pred ---CceEEEEEEecCCcccCCCCCEEEEEcCCChhhhhcEEEEECCCCceeEEEcCCcEEEehHHHHHHHHh-----hCc
Confidence 234589999853200 0125799999999999999999999999999877653322 223333322 011
Q ss_pred hHhhhhhcccccccceEEecCCC---CCcccEEecCcccCCCCCCceEecCCCChhhHHHHHHcCCceeeeecCCCCCCc
Q 002217 360 ERTELQKEKTGVFSGCYARNPAS---GEAIPIWVADYVLGSYGTGAIMAVPAHDTRDHEFALKFDISIHSVVMPDDESSS 436 (952)
Q Consensus 360 ~~~~~~~~~~~~l~g~~~~~P~~---~~~~pv~~~~~V~~~~GTG~V~~~Pah~~~D~~~~~~~~L~i~~vv~~~~~~~~ 436 (952)
..+...+|..|.|+.+.||+. ++.+||+.++||++++|||+||+|||||++||++|++||||++++|++.
T Consensus 274 --~~~~~~~G~~l~g~~~~~p~~~~~~~~~pi~~~~~V~~~~GTG~V~~~Pah~~~D~~~~~~~~l~~~~~id~~----- 346 (821)
T 1ile_A 274 --QVLKTFPGKALEGLPYTPPYPQALEKGYFVVLADYVSQEDGTGIVHQAPAFGAEDLETARVYGLPLLKTVDEE----- 346 (821)
T ss_dssp --CEEEEECHHHHTTCBBCCSSCCCCSSCSBEEECTTCCSSSSCSCEECCTTSCHHHHHHHHHTTCCCCCCBCTT-----
T ss_pred --EEEEEechHHhcCCEEEcCCcccCCCEEEEEecCcCccCCCCcceEecCCCCHHHHHHHHHcCCCcceeECCC-----
Confidence 123344556799999999985 8999999999999999999999999999999999999999999999865
Q ss_pred cccccccccceEEcccCcccccccCCCCHHHHHHHHHHHHHHcCCCcce-------------------------------
Q 002217 437 QSEKAYTGEGLIVNSSNLISGLDINGLSCQEATSKVIEWAEKTGNGKKK------------------------------- 485 (952)
Q Consensus 437 ~~~~~y~~~g~l~~~~~~~~~~~~~gl~~~~a~~~ii~~l~~~~~~~~~------------------------------- 485 (952)
|.+.++ . +.|+.+.+|++.|++.|.+.|.+.+.
T Consensus 347 ---------G~~~~~------~-~~G~~~~~a~~~i~~~L~~~g~~~~~~~~~h~~p~c~r~~~~~~~~~~~qWF~~~~~ 410 (821)
T 1ile_A 347 ---------GKLLVE------P-FKGLYFREANRAILRDLRGRGLLFKEESYLHSYPHCWRCSTPLMYYATESWFIKNTL 410 (821)
T ss_dssp ---------SBBCSG------G-GTTCBHHHHHHHHHHHHHHTTCEEEEEEEEEEEEBCSSSCCBCEEEECCEEEECGGG
T ss_pred ---------CcCccc------C-cCCCCHHHHHHHHHHHHHhCCCeeeeecccccCCEecCCCCEEEEEecchhhhchHH
Confidence 333322 1 77888889999999999887764221
Q ss_pred -----------ecc---------------cCCceeecccCCCCcccCceEeCCCCceeec-CCCCcCCCCCcccccCCCC
Q 002217 486 -----------VNY---------------KLRDWLFARQRYWGEPIPVVFLDGTGETVPL-HEAELPLTLPELDDFTPTG 538 (952)
Q Consensus 486 -----------~~~---------------~l~DW~ISRQR~WG~PIPv~~~~~~~~~~~~-~~~~l~v~lp~~~~~~~~G 538 (952)
++| +++||||||||+||+|||+|+|++||...++ +.++| +..+. +..+ |
T Consensus 411 ~~~~~~~~~~~~~~~P~~~~~~~~~~~l~~l~DW~ISRqr~WG~pIP~~~~~~~~~~~vi~~~~~l-~~~~~--~~~~-~ 486 (821)
T 1ile_A 411 FKDELIRNNQEIHWVPPHIKEGRYGEWLKNLVDWALSRNRYWGTPLPIWVCQACGKEEAIGSFQEL-KARAT--KPLP-E 486 (821)
T ss_dssp GHHHHHHHHHHSEESSGGGTTTTTHHHHHTCCCEECCBCCSSSCBCCEEEESSSSCCEECCSHHHH-HHHBS--SCCC-S
T ss_pred HHHHHHHHhcCeEEECchhhHhHHHHHHhCCchheecccCCCCCeeeEEEecCCCcEEeeCcHHHH-Hhhcc--cccc-c
Confidence 111 5899999999999999999999988765443 22222 00000 0000 0
Q ss_pred CCCCCCccccccccccccCCCCCccccCCCcccccccc-chhheecCCCCchhHhhhhhhhcCCCceeEecCchhhHHHH
Q 002217 539 TGEPPLSKAVSWVQTTEHSSGKPARRETSTMPQWAGSC-WYYLRFMDPKNSKELVDKTKERYWSPVDVYVGGAEHAVLHL 617 (952)
Q Consensus 539 ~~~~~l~~~~~w~~~~~~~~g~~~~re~d~lD~WfdSs-wy~~~~~~p~~~~~~~~~~~~~~w~PvDlyv~G~D~~~~HL 617 (952)
. ........+|+...|| ||++++|++|||||||||+ |++....+|.++.+.+ ++|||+|+|++|+||+
T Consensus 487 ~-~~l~~~~~d~~~~~~~-~g~~~~r~~dvld~WfdS~~~~~~~~~~p~~~~~~f-----~~~~P~dl~~~G~D~~---- 555 (821)
T 1ile_A 487 P-FDPHRPYVDQVELACA-CGGTMRRVPYVIDVWYDSGAMPFASLHYPFEHEEVF-----RESFPADFIAEGIDQT---- 555 (821)
T ss_dssp S-CCCSHHHHTTCEEECT-TSSEEEECSCBCCHHHHHHHHHHHTTTTTTSCHHHH-----HHHSSBSBEEEEGGGG----
T ss_pred h-hhhccccccccccCCC-CCCchhhcccccceecccccchHhhcCCCccchHHH-----hhcCCcccccchhhhh----
Confidence 0 0111112345566788 9999999999999999998 5566677886543332 4578999999999996
Q ss_pred HHHHHHHHHHHHhcCc-CCCCcchhhhhhceeccccceeEEecCCCccccCCCCCcccccccccCccccccccCCceeec
Q 002217 618 LYARFWHKVLYDIGVV-STKEPFKCVINQGIILGEMQYMVCKDVDGSYISADSTDTLGEYEQESIPEEKVMKSGDFFVMK 696 (952)
Q Consensus 618 ly~Rfw~~~L~~~~~~-~~~~PFk~l~~~G~vl~~~~y~~~~d~~g~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~vl~ 696 (952)
|||+.+|+.++.. .+.+||+++++||||++.
T Consensus 556 ---r~w~~~~~~~~~~~~~~~pf~~v~~hg~vl~~--------------------------------------------- 587 (821)
T 1ile_A 556 ---RGWFNSLHQLGVMLFGSIAFKNVICHGLILDE--------------------------------------------- 587 (821)
T ss_dssp ---GTHHHHHHHHHHHHHSSCSBSEEEEECCEECT---------------------------------------------
T ss_pred ---ccHHHHHHHHHHHhcCCCCcceEEEEeeEECC---------------------------------------------
Confidence 9999888777654 567899999999999853
Q ss_pred cCcchhhcccccccccCCCCCCChhhHHhhhCchhhhhhhhhcCCCCCCCCCChhhHHH-HHHHHHHHHHHHhcc----C
Q 002217 697 DNPNIRLIARAHKMSKSRGNVVNPDDVVTEYGADSLRLYEMFMGPFRDSKTWNTSGIEG-VHRFLGRMWRLIVGS----S 771 (952)
Q Consensus 697 ~~~~~~v~~~g~KMSKSkGNvV~P~eii~~YGaDalRl~ll~~~~~~~~~~~s~~~i~~-~~r~l~~l~~~~~~~----~ 771 (952)
+|+|||||+||+|+|.++|++||||++|||+++.++++++.+|+++.+++ +.++++++||++... .
T Consensus 588 ---------~G~KMSKS~GNvV~p~dli~~yGaDalR~~ll~~~~~~~d~~fs~~~l~~~~~~~~~kl~N~~~~~~~~~~ 658 (821)
T 1ile_A 588 ---------KGQKMSKSKGNVVDPWDIIRKFGADALRWYIYVSAPPEADRRFGPNLVRETVRDYFLTLWNVYSFFVTYAN 658 (821)
T ss_dssp ---------TSSCCCTTTTCCCCHHHHHTTTCHHHHHHHHHHHSCSSSCEECCHHHHHHHHHHTHHHHHHHHHHHHHHHH
T ss_pred ---------CCCCCCccCCCCCCHHHHHHHhCHHHHHHHHHhCCCCCCCcEecHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 37999999999999999999999999999999999999999999999999 578888888765210 0
Q ss_pred CCCCCCCC-Cc--cCCCCCChHHHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHH-HHHhcccc----------------
Q 002217 772 LPDGTFKG-GT--VVNDEEPTLEQLCTLHKCIAKVTEEIEGTRFNTGISAMMEFI-NAAYKWEK---------------- 831 (952)
Q Consensus 772 ~~~~~~~~-~~--~~~~~~~d~~~l~~l~~~i~~v~~~~e~~~f~~ai~~l~~f~-~~~~~~~~---------------- 831 (952)
.. .+.+ .. .......|.++++++++++++++++|++|+|++|++.+++|+ +.+.+|+.
T Consensus 659 ~~--~~~~~~~~~~~~~~~~d~~ll~~l~~~~~~v~~a~e~~~f~~A~~~l~~f~~~~~~n~Yl~~~k~~~~~~~~~~~r 736 (821)
T 1ile_A 659 LD--RPDLKNPPPPEKRPEMDRWLLARMQDLIQRVTEALEAYDPTTSARALRDFVVEDLSQWYVRRNRRRFWKNEDALDR 736 (821)
T ss_dssp HH--CCCTTSCCCSTTSCHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHSSTTTHHHHHHHHHTCTTTSST
T ss_pred cc--cCCcccccccccCCHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHHHHHHHhhhhcccCCCcHHH
Confidence 10 1111 00 111234578899999999999999999999999999999999 55554421
Q ss_pred -----hhHHHHHHHHHHhCCcchhHHHHHHHHcCCC-----C-CccccCCCCCCccccC
Q 002217 832 -----HPRKIIEPFILLLAPYAPHMSEELWFRLGHS-----N-SLAYESFPKANPDYLK 879 (952)
Q Consensus 832 -----~~~~vL~~l~~LLaPf~P~iaEElw~~L~~~-----~-sV~~~~WP~~~~~~l~ 879 (952)
.+.++|+.+++||+|||||+|||||+.|+.. + |||++.||++++.+++
T Consensus 737 ~~~~~~l~~~l~~~~~lLaP~~P~~aeelw~~L~~~~~~~~~~sv~~~~~P~~~~~~~~ 795 (821)
T 1ile_A 737 EAAYATLYEALVLVATLAAPFTPFLAEVLWQNLVRSVRLEAKESVHLADWPEADPALAD 795 (821)
T ss_dssp THHHHHHHHHHHHHHHHHTTTSTTHHHHHHHHHTTTTSTTSCSSGGGSCCCCCCTTTCC
T ss_pred HHHHHHHHHHHHHHHHHcCCccchHHHHHHHhccccccCCCCCceEeecCCCCCcccCC
Confidence 2347899999999999999999999999763 5 9999999999876554
No 6
>1wz2_A Leucyl-tRNA synthetase; ligase, riken structural genomics/proteomics initiativ structural genomics, ligase-RNA complex; 3.21A {Pyrococcus horikoshii}
Probab=100.00 E-value=1.3e-115 Score=1098.99 Aligned_cols=669 Identities=26% Similarity=0.422 Sum_probs=496.5
Q ss_pred cCCChhhhhHHHHHHHHHcCCCCCCCCCCCCCCcEEEEcCCCCCCCCCCCCchhHHHHHHHHHHHHHHHcCCcccccccc
Q 002217 62 RAYPFHEIEPKWQSYWENNRTFRTPDEIDTSKPKFYVLDMFPYPSGAGLHVGHPLGYTATDILARLKRMQGYNVLHPMGW 141 (952)
Q Consensus 62 ~~y~~~~iE~k~~~~W~~~~~f~~~~~~~~~k~kf~i~~~~Pypng~~lHiGH~~~~~~~Di~~Ry~r~~G~~V~~~~G~ 141 (952)
..|||.++|++||++|+++++|+...+...++++|+|++|||||||. |||||++|++++|+++||+||+||+|+|++||
T Consensus 2 ~~~~~~~iE~~~~~~W~~~~~f~~~~~~~~~~~kf~i~~~pPy~nG~-lHiGH~~~~~~~Dii~Ry~rm~G~~Vl~~~Gw 80 (967)
T 1wz2_A 2 AELNFKAIEEKWQKRWLEAKIFEPNIRDKPKEKKFYITVAFPYLSGH-LHVGHARTYTIPDVIARFKRMQGYNVLFPMAW 80 (967)
T ss_dssp --CCCHHHHHHHHHHHHHHTTTSCCGGGSCGGGCCBEEECCCBCSSC-CBHHHHHHHHHHHHHHHHHHHTTCCCBCCCCB
T ss_pred CCCCHHHHHHHHHHHHHhCCCcccCccccCCCCcEEEEeCCCCCCCC-cchhhhHHHHHHHHHHHHHHcCCCccCCCCcC
Confidence 46999999999999999999999875322234899999999999998 99999999999999999999999999999999
Q ss_pred cccChHHHHHHHHh---------------C---------CCchHHHHHHHHHHHHHHHHcCCccccCCcccCCC--hhHH
Q 002217 142 DAFGLPAEQYAIET---------------G---------THPKITTLRNINRFRTQLKSLGFSYDWNREISTIE--PAYY 195 (952)
Q Consensus 142 D~~Glpie~~a~~~---------------g---------~~~~~~~~~~~~~~~~~l~~lgi~~Dw~~~~~T~~--~~~~ 195 (952)
||||+|||.+|.+. | ..|++++.++++.|++||++||+++||+|+|.||| |.|+
T Consensus 81 D~~GlPie~~a~~~~~~~~~~~~~~~~~~gi~~~~~~~~~~~~~~~~~~~~~~~~~~~~lG~~~Dw~r~~~T~d~np~y~ 160 (967)
T 1wz2_A 81 HITGSPIVGIAERIKNRDPKTIWIYRDVYKVPEEILWTFEDPINIVKYFMKAAKETFIRAGFSVDWSREFYTTSLFPPFS 160 (967)
T ss_dssp BCCSSHHHHHHHHHHTTCHHHHHHHHTTSCCCHHHHHGGGSHHHHHHHHHHHHHHHHHTTTCCCCTTSCCBCSTTSHHHH
T ss_pred CCCCcHHHHHHHHhhccchhHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhCceEecCCCeEECCCChhHH
Confidence 99999999887642 3 35788999999999999999999999999999999 9999
Q ss_pred HHHHHHHHHHHHCCceeeeccccccCCCCCcccCchhhccCccccCCCCeEEeeccccchhhhhhhhHhhccCCCCCCch
Q 002217 196 KWTQWIFLQLLKRGLAYQAEVPVNWCPALGTVLANEEVVDGVSERGGHPVIRKPMRQWMLKITEYADRLLDDLDDLDWPE 275 (952)
Q Consensus 196 ~~v~~~f~~L~~kGliy~~~~~v~wc~~~~t~ls~~Ev~~~~~~~~~~~~~~~~~~~~~~~i~~y~~~l~~~l~~~~~p~ 275 (952)
++++|+|.+|+++||||++.++|+|||.|+|+|||+||+++.+..
T Consensus 161 ~~v~~~F~~L~~kGliyr~~~~v~wcp~~~T~Lad~Ev~~~~~~~----------------------------------- 205 (967)
T 1wz2_A 161 KFIEWQFWKLKEKGYIVKGAHRVRWDPVVGTPLGDHDLMEGEDVP----------------------------------- 205 (967)
T ss_dssp HHHHHHHHHTTTTTCEEECCCCCEECTTTSCBCCSSSCSSCCCCC-----------------------------------
T ss_pred HHHHHHHHHHHHCCCEEEeceEecccCCCCCCcchhhhccCCCce-----------------------------------
Confidence 999999999999999999999999999999999999999763210
Q ss_pred HHHHHHHhhhccCCCceEEEEEecCCCCccCcEEEEecCCcchhccccEEEECCCCccchhhccc----cch-HHHHHHH
Q 002217 276 SVKEMQRNWIGRSEGAEMDFRVLDSDGQERDIKITVYTTRPDTIFGATYLVVAPEHPLLSSLVST----TQS-QNIEEYK 350 (952)
Q Consensus 276 ~~~~~~~~~i~~s~~~~v~f~~~~~~~~~~~~~i~i~TT~P~Tl~g~~~v~v~p~~~y~~~~~~~----~~~-~~~~~y~ 350 (952)
.+..++|+|++.+. ..+.+++||||||||||||+||||||+++|+.+.+.+ +.- ...+.+.
T Consensus 206 -----------~~~~~~v~f~~~~~---~~~~~l~i~TTrPeTl~g~~avav~P~~~Y~~~~~~~~~~~~~~i~a~~~~~ 271 (967)
T 1wz2_A 206 -----------ILDYIIIKFELREN---GEVIYLPAATLRPETVYGVTNMWVNPNATYVKAKVRRKDKEETWIVSKEAAY 271 (967)
T ss_dssp -----------EECCEEEEEECCCS---SSCCEEEEEESCGGGGGGCCEEEECSSSCEEEEEEECSSCEEEEEEEHHHHH
T ss_pred -----------eceeEEEEEEecCC---CCceEEEEEcCCchHhhhheEEEECCCCcEEEEEecCCCcceeeehHHHHHH
Confidence 12235789998532 1237899999999999999999999999998765433 110 0001111
Q ss_pred HHHhccchhhHhhhhhcccccccceEEecCCCCCcccEEecCcccCCCCCCceEecCCCChhhHHH----------HHHc
Q 002217 351 NLASRKSDLERTELQKEKTGVFSGCYARNPASGEAIPIWVADYVLGSYGTGAIMAVPAHDTRDHEF----------ALKF 420 (952)
Q Consensus 351 ~~~~~~~~~~~~~~~~~~~~~l~g~~~~~P~~~~~~pv~~~~~V~~~~GTG~V~~~Pah~~~D~~~----------~~~~ 420 (952)
......... ..+...+|..|.|+++.||++++++||++++||++++|||+||+|||||++||++ |++|
T Consensus 272 ~~~~~~~~~--~~~~~~~G~~l~G~~~~~P~~~~~ipi~~~~~V~~~~GTG~V~~~Pah~~~Dy~~~~~~~~~~~~~~k~ 349 (967)
T 1wz2_A 272 KLSFQDREI--EVIEEFKGEKLIGKYVRNPVSGDEVIILPAEFVDPDNATGVVMSVPAHAPFDHVALEDLKRETEILEKY 349 (967)
T ss_dssp HHHHSSCEE--EEEEECCSSTTSSCEEECSSSSCEEEEEECSSCCSSSTTSCEEECTTSCTTTTTTTSCCSCCSCCCCTT
T ss_pred HHHhhccCc--EEEEEEEchhhcCCEEECCCCCCceEEEecccccCCCCcccEEeecCCCHHHHHHHHhhccchhHHHHc
Confidence 111111111 1122344557999999999999999999999999999999999999999999974 6788
Q ss_pred CCc--------eeeeecCCC-CCCc--------------c-------ccccccc---cceEEcccCcccccccCCCCHHH
Q 002217 421 DIS--------IHSVVMPDD-ESSS--------------Q-------SEKAYTG---EGLIVNSSNLISGLDINGLSCQE 467 (952)
Q Consensus 421 ~L~--------i~~vv~~~~-~~~~--------------~-------~~~~y~~---~g~l~~~~~~~~~~~~~gl~~~~ 467 (952)
||| ++++|+.++ |.+. + ...+|.. +|+|+ + ..+.|+.+.+
T Consensus 350 ~l~~~~~~~l~~i~vi~~~~~g~~~~~~~~~~~~i~~~~d~~~l~~a~~~~y~~~~~~G~~~-~------g~~~G~~v~e 422 (967)
T 1wz2_A 350 DIDPRIVENITYISLIKLEGYGDFPAVEEVNKLGIKSQKDKEKLEQATKTIYKAEYHKGIFK-V------PPYEGKPVQE 422 (967)
T ss_dssp CCCCCCC----------------CCSSCCTTTSSSCCCSSCTTHHHHTTHHHHHHHHSCBCC-S------SSSCSSBHHH
T ss_pred CCchhhcccccceeeeecCCccccchhhhhhhccCCCccchHHHHHHHHHhhhccccCceEe-c------cCcCCcCHHH
Confidence 987 677775432 1000 0 0122332 57665 3 3589999999
Q ss_pred HHHHHHHHHHHcCCCcc-------------------e-------------------------ecc--------------c
Q 002217 468 ATSKVIEWAEKTGNGKK-------------------K-------------------------VNY--------------K 489 (952)
Q Consensus 468 a~~~ii~~l~~~~~~~~-------------------~-------------------------~~~--------------~ 489 (952)
|++.|+++|.+.|.+.. . +++ +
T Consensus 423 a~~~i~~~L~~~g~l~~~~~~~~~p~~~R~g~~~i~~~~~~qWFi~~~~~~~k~~~l~~~~~~~~~P~~~~~~~~~~l~~ 502 (967)
T 1wz2_A 423 VKEAIAKEMLEKGIAEIMYEFAEKNVISRFGNRAVIKIIHDQWFIDYGNPEWKEKARKALERMKILPETRRAQFEAIIDW 502 (967)
T ss_dssp HTTTTHHHHHHHTSEEECCEESSSCCBCSSSSBCEECCCSSCEEEESCCTTHHHHHHHHHTTSCEESSTTHHHHHHHHHS
T ss_pred HHHHHHHHHHhCCCceEEEecCCCceECCCCCEEEEeccCCccceecCchHHHHHHHHhhhccEeeCccccchHHHhhhc
Confidence 99999999998764200 0 000 4
Q ss_pred CCceeecccCCCCcccCc---eEeCCCCceeecCCCCcCCCCCcccccCCCCCCCCCCccccccccccccCCCCCc-ccc
Q 002217 490 LRDWLFARQRYWGEPIPV---VFLDGTGETVPLHEAELPLTLPELDDFTPTGTGEPPLSKAVSWVQTTEHSSGKPA-RRE 565 (952)
Q Consensus 490 l~DW~ISRQR~WG~PIPv---~~~~~~~~~~~~~~~~l~v~lp~~~~~~~~G~~~~~l~~~~~w~~~~~~~~g~~~-~re 565 (952)
++||||||||+||+|||+ |.|+. .+++.+++........ +......+|.+. .-.
T Consensus 503 l~DW~ISRqr~WG~piP~d~~~~~~~------~~ds~iYv~~~~~~~~----------------~~~~~~~~g~~~~~l~ 560 (967)
T 1wz2_A 503 LDKKACARKIGLGTPLPWDPEWVIES------LSDSTIYMAYYTISRH----------------INKLRQEGKLDPEKLT 560 (967)
T ss_dssp CCEECCCBSSSSSEECTTCTTSEECH------HHHTTSTHHHHHHHHH----------------HHHHHHTTCCCGGGCC
T ss_pred ccCeeeccCCCCCccCCcCccccccc------CCCCceEeehhhhhhH----------------HHHHHHhcCCChHHcC
Confidence 689999999999999996 34421 1122222100000000 000000011100 113
Q ss_pred CCCccccccc----c--chhh-eecCCCCchhHhh--hhhhhcCCCceeEecCchhhHHHHHHHHHHHHHHHHhcCcCCC
Q 002217 566 TSTMPQWAGS----C--WYYL-RFMDPKNSKELVD--KTKERYWSPVDVYVGGAEHAVLHLLYARFWHKVLYDIGVVSTK 636 (952)
Q Consensus 566 ~d~lD~WfdS----s--wy~~-~~~~p~~~~~~~~--~~~~~~w~PvDlyv~G~D~~~~HLly~Rfw~~~L~~~~~~~~~ 636 (952)
++++|+||.+ + |.+. ..+.|+. .+. ++..++|||+|+|++|+||+.+|+.|.++++.++++ .
T Consensus 561 ~~~~d~~~~~~~~~g~~~~~~~~sG~~~~---~~~~~~~~~~~w~P~Di~~~G~D~i~~H~~~~~~~~~a~~~------~ 631 (967)
T 1wz2_A 561 PEFFDYIFLEEFSEDKEKELEKKTGIPAE---IIHEMKEEFEYWYPLDWRCSGKDLIPNHLTFFIFNHVAIFR------E 631 (967)
T ss_dssp HHHHHHTTTSCCCHHHHHHHHHHHTCCHH---HHHHHHHHHHHHCSCSEEEEEGGGTTTHHHHHHHHHHHHSC------S
T ss_pred cccceeeccCccccCccccchhhcCCCHH---HHhhhHHHHHhhCCCeEEeeeeCcchhHHHHHHHHHHHHcC------c
Confidence 4677888743 1 1111 1122321 111 123478999999999999999999988887766654 3
Q ss_pred Ccc-hhhhhhceeccccceeEEecCCCccccCCCCCcccccccccCccccccccCCceeeccCcchhhcccccccccCCC
Q 002217 637 EPF-KCVINQGIILGEMQYMVCKDVDGSYISADSTDTLGEYEQESIPEEKVMKSGDFFVMKDNPNIRLIARAHKMSKSRG 715 (952)
Q Consensus 637 ~PF-k~l~~~G~vl~~~~y~~~~d~~g~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~vl~~~~~~~v~~~g~KMSKSkG 715 (952)
.|| +.+++||||+.+ |+|||||+|
T Consensus 632 ~~~pk~v~~~G~v~~~-------------------------------------------------------G~KMSKS~G 656 (967)
T 1wz2_A 632 EHWPKGIAVNGFGTLE-------------------------------------------------------GQKMSKSKG 656 (967)
T ss_dssp TTSCCCEEEECCEEES-------------------------------------------------------SSCCCTTTC
T ss_pred ccccceEEEeeEEeeC-------------------------------------------------------CEEcccccc
Confidence 456 899999998742 899999999
Q ss_pred CCCChhhHHhhhCchhhhhhhhhcCCCCCCCCCChhhHHHHHHHHHHHHHHHhccCCCCCCCCCCccCCCCCChHHHHHH
Q 002217 716 NVVNPDDVVTEYGADSLRLYEMFMGPFRDSKTWNTSGIEGVHRFLGRMWRLIVGSSLPDGTFKGGTVVNDEEPTLEQLCT 795 (952)
Q Consensus 716 NvV~P~eii~~YGaDalRl~ll~~~~~~~~~~~s~~~i~~~~r~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~d~~~l~~ 795 (952)
|+|+|.++|++||||++|||++++++++++.+|+++.++++.++++|+|+++..... .. .+ ........|+|++++
T Consensus 657 Nvv~p~d~i~~yGaDalR~~ll~~~~~~~d~~fs~~~~~~~~~~l~rl~n~~~~~~~--~~-~~-~~~~~~~~D~~il~~ 732 (967)
T 1wz2_A 657 NVLNFIDAIEENGADVVRLYIMSLAEHDSDFDWRRKEVGKLRKQIERFYELISQFAE--YE-VK-GNVELKDIDRWMLHR 732 (967)
T ss_dssp CCCBHHHHHHTTCHHHHHHHHHHHCCTTCCEEECHHHHHHHHHHHHHHHHHHHHHHS--SC-CC-CCCCCCHHHHHHHHH
T ss_pred CCCCHHHHHHHhChHHHHHHHHhCCCCCCCcccCHHHHHHHHHHHHHHHHHHHHHhc--CC-CC-CcccCCHHHHHHHHH
Confidence 999999999999999999999988999999999999999999999999987732210 00 00 011123458899999
Q ss_pred HHHHHHHHHHHHhcCChHHHHHHH-HHHHHHHhccc------------chhHHHHHHHHHHhCCcchhHHHHHHHHcCCC
Q 002217 796 LHKCIAKVTEEIEGTRFNTGISAM-MEFINAAYKWE------------KHPRKIIEPFILLLAPYAPHMSEELWFRLGHS 862 (952)
Q Consensus 796 l~~~i~~v~~~~e~~~f~~ai~~l-~~f~~~~~~~~------------~~~~~vL~~l~~LLaPf~P~iaEElw~~L~~~ 862 (952)
+++++++++++|++|+|++|+.++ +.+++.++.+. ..++++|+.+++||||||||+|||||+.|+..
T Consensus 733 l~~~~~~v~~~~e~~~f~~A~~~~~~~l~~~~n~Yi~~~k~~~~~~~~~~l~~~l~~l~~LLaP~~P~~aEeiw~~L~~~ 812 (967)
T 1wz2_A 733 LNKAIKETTNALEEFRTRTAVQWAFYSIMNDLRWYLRRTEGRDDEAKRYVLRTLADVWVRLMAPFTPHICEELWEKLGGE 812 (967)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHTHHHHHHHHHHHHHTTTCCCHHHHHHHHHHHHHHHHHHTTTSHHHHHHHHHHSSCC
T ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHHHHHHhccccchHHHHHHHhcCCC
Confidence 999999999999999999999876 56666655321 13458999999999999999999999999888
Q ss_pred CCccccCCCCCCccccC
Q 002217 863 NSLAYESFPKANPDYLK 879 (952)
Q Consensus 863 ~sV~~~~WP~~~~~~l~ 879 (952)
+|||++.||++++..++
T Consensus 813 ~sv~~~~wP~~~~~~~d 829 (967)
T 1wz2_A 813 GFVSLAKWPEPVEEWWN 829 (967)
T ss_dssp SCGGGSCCCCCCSSCCC
T ss_pred CceeccCCCCCCcccCC
Confidence 89999999999876554
No 7
>1wkb_A Leucyl-tRNA synthetase; leucine, aminoacyl-tRNA, editing, amino acid, aminoacylation, trnaLeu, structural genomics; 2.05A {Pyrococcus horikoshii}
Probab=100.00 E-value=1.4e-108 Score=1024.41 Aligned_cols=650 Identities=27% Similarity=0.424 Sum_probs=480.5
Q ss_pred cCCChhhhhHHHHHHHHHcCCCCCCCCCCCCCCcEEEEcCCCCCCCCCCCCchhHHHHHHHHHHHHHHHcCCcccccccc
Q 002217 62 RAYPFHEIEPKWQSYWENNRTFRTPDEIDTSKPKFYVLDMFPYPSGAGLHVGHPLGYTATDILARLKRMQGYNVLHPMGW 141 (952)
Q Consensus 62 ~~y~~~~iE~k~~~~W~~~~~f~~~~~~~~~k~kf~i~~~~Pypng~~lHiGH~~~~~~~Di~~Ry~r~~G~~V~~~~G~ 141 (952)
..|||.++|++||++|+++++|+...+.++++++|+|++|||||||. |||||++|++++|+++||+||+||+|++++||
T Consensus 2 ~~~~~~~~E~~~~~~W~~~~~f~~~~~~~~~~~~~~i~~~~Py~nG~-lHiGH~~~~~~~D~i~R~~rm~G~~V~~~~G~ 80 (810)
T 1wkb_A 2 AELNFKAIEEKWQKRWLEAKIFEPNIRDKPKEKKFYITVAFPYLSGH-LHVGHARTYTIPDVIARFKRMQGYNVLFPMAW 80 (810)
T ss_dssp --CCCHHHHHHHHHHHHHTTTTCCCGGGSCGGGEEEEEECCCBTTSC-CBHHHHHHHHHHHHHHHHHHHHTCEEECCCCB
T ss_pred CCCCHHHHHHHHHHHHHhCCCcccCchhcCCCCcEEEEeCCCCCCCC-CccccchhHHHHHHHHHHHHcCCCccCcCCcc
Confidence 46999999999999999999999875444468999999999999998 99999999999999999999999999999999
Q ss_pred cccChHHHHHHHHh------------------------CCCchHHHHHHHHHHHHHHHHcCCccccCCcccCCC--hhHH
Q 002217 142 DAFGLPAEQYAIET------------------------GTHPKITTLRNINRFRTQLKSLGFSYDWNREISTIE--PAYY 195 (952)
Q Consensus 142 D~~Glpie~~a~~~------------------------g~~~~~~~~~~~~~~~~~l~~lgi~~Dw~~~~~T~~--~~~~ 195 (952)
||||+|||..|.+. +..|+++++++.+.|+++|++||+++||+++++|+| |.|+
T Consensus 81 D~~G~pie~~a~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lgi~~Dw~~~~~T~d~~~~~~ 160 (810)
T 1wkb_A 81 HITGSPIVGIAERIKNRDPKTIWIYRDVYKVPEEILWTFEDPINIVKYFMKAAKETFIRAGFSVDWSREFYTTSLFPPFS 160 (810)
T ss_dssp BCCBSHHHHHHHHHHTTCHHHHHHHHHTSCCCHHHHHGGGSHHHHHHHHHHHHHHHHHHTTCCCCGGGCCBCSTTSHHHH
T ss_pred CCCCChHHHHHHHhcccCchHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhCeEEecCCceEecCCchHHH
Confidence 99999999887542 246788999999999999999999999999999999 9999
Q ss_pred HHHHHHHHHHHHCCceeeeccccccCCCCCcccCchhhccCccccCCCCeEEeeccccchhhhhhhhHhhccCCCCCCch
Q 002217 196 KWTQWIFLQLLKRGLAYQAEVPVNWCPALGTVLANEEVVDGVSERGGHPVIRKPMRQWMLKITEYADRLLDDLDDLDWPE 275 (952)
Q Consensus 196 ~~v~~~f~~L~~kGliy~~~~~v~wc~~~~t~ls~~Ev~~~~~~~~~~~~~~~~~~~~~~~i~~y~~~l~~~l~~~~~p~ 275 (952)
++++|+|.+|+++|+||++.++|+|||.|+|+||++||+++.+.. +
T Consensus 161 ~~v~~~f~~L~~~Gliy~~~~~v~~~~~~~t~La~~ev~~~~~~~----------------~------------------ 206 (810)
T 1wkb_A 161 KFIEWQFWKLKEKGYIVKGAHRVRWDPVVGTPLGDHDLMEGEDVP----------------I------------------ 206 (810)
T ss_dssp HHHHHHHHHHHHTTCEEEEEEEEEEETTTTEECCTTCCSBCSSCC----------------E------------------
T ss_pred HHHHHHHHHHHHCCCEEECCeeeeccCCcCCCccHHHHhcCCCCc----------------c------------------
Confidence 999999999999999999999999999999999999999764310 1
Q ss_pred HHHHHHHhhhccCCCceEEEEEecCCCCccCcEEEEecCCcchhccccEEEECCCCccchhhccc----cch-HHHHHHH
Q 002217 276 SVKEMQRNWIGRSEGAEMDFRVLDSDGQERDIKITVYTTRPDTIFGATYLVVAPEHPLLSSLVST----TQS-QNIEEYK 350 (952)
Q Consensus 276 ~~~~~~~~~i~~s~~~~v~f~~~~~~~~~~~~~i~i~TT~P~Tl~g~~~v~v~p~~~y~~~~~~~----~~~-~~~~~y~ 350 (952)
+..++|+|++.+.+ .+.+++|||||||||||++||||||+++|+.+.+.+ +.. ...+.+.
T Consensus 207 ------------~~~~~v~f~~~~~~---~~~~l~v~TTrP~Tl~g~~av~v~P~~~y~~~~~~~~~~~~~~i~~~~~~~ 271 (810)
T 1wkb_A 207 ------------LDYIIIKFELRENG---EVIYLPAATLRPETVYGVTNMWVNPNATYVKAKVRRKDKEETWIVSKEAAY 271 (810)
T ss_dssp ------------EEEEEEEEECCSSC---SCCEEEEEESCGGGGGGCCEEEECTTSCEEEEEEEETTEEEEEEEEHHHHH
T ss_pred ------------ceeEEEEEEccCCC---CceEEEEEcCCchHhhhhhEEEECCCCcEEEEEecCCCcceeeeeHHHHHH
Confidence 12247899985421 236899999999999999999999999998765432 110 0011111
Q ss_pred HHHhccchhhHhhhhhcccccccceEEecCCCCCcccEEecCcccCCCCCCceEecCCCChhhHHH----------HHHc
Q 002217 351 NLASRKSDLERTELQKEKTGVFSGCYARNPASGEAIPIWVADYVLGSYGTGAIMAVPAHDTRDHEF----------ALKF 420 (952)
Q Consensus 351 ~~~~~~~~~~~~~~~~~~~~~l~g~~~~~P~~~~~~pv~~~~~V~~~~GTG~V~~~Pah~~~D~~~----------~~~~ 420 (952)
......... ..+...+|..|+|+++.||++++++||++++||++++|||+||+|||||++||++ |++|
T Consensus 272 ~~~~~~~~~--~~~~~~~G~~l~g~~~~~P~~~~~ipi~~~~~V~~~~GTG~V~~~Pah~~~D~~~~~~~~~~~~~~~k~ 349 (810)
T 1wkb_A 272 KLSFQDREI--EVIEEFKGEKLIGKYVRNPVSGDEVIILPAEFVDPDNATGVVMSVPAHAPFDHVALEDLKRETEILEKY 349 (810)
T ss_dssp HHTTSSCEE--EEEEECTTTTTTTCEEECSSSCCEEEEEECTTSCTTSTTSCEEECTTTCHHHHHHHCCCSCCSCCCTTC
T ss_pred HHHhhhcce--EEEEEEEchhhcCCEEECCCCCCeeEEEecCcccCCCCceeEEeCCCCCHHHHHHHHhhccchhHHHHc
Confidence 111110011 1122334556999999999999999999999999999999999999999999975 5788
Q ss_pred CCc--------eeeeecCCCC-CCc--------------c-------ccccccc---cceEEcccCcccccccCCCCHHH
Q 002217 421 DIS--------IHSVVMPDDE-SSS--------------Q-------SEKAYTG---EGLIVNSSNLISGLDINGLSCQE 467 (952)
Q Consensus 421 ~L~--------i~~vv~~~~~-~~~--------------~-------~~~~y~~---~g~l~~~~~~~~~~~~~gl~~~~ 467 (952)
||| ++++|+.++. .+. + ...+|.+ +|.++ + ..++|+.+.+
T Consensus 350 ~l~~~~~~~l~~~~vi~~~~~~~~~~~~~~~~~~i~~~~d~~~~~~~~~~~~~~~~~~G~~~-~------g~~~G~~v~~ 422 (810)
T 1wkb_A 350 DIDPRIVENITYISLIKLEGYGDFPAVEEVNKLGIKSQKDKEKLEQATKTIYKAEYHKGIFK-V------PPYEGKPVQE 422 (810)
T ss_dssp SCCCCCC----------------CCTTCCSGGGTSCCCTTCSCTHHHHHHHHHHHHHSCEEC-S------GGGTTEEHHH
T ss_pred CCChhhcccccceeeeccCCccccchhhhhhhccCCCcchhhhhhhhhhhhhhccccCceEe-c------cCcCCeEHHH
Confidence 987 7888765321 000 0 0112332 57776 3 3599999999
Q ss_pred HHHHHHHHHHHcCCCcc-------------------e---ec----------------------c--------------c
Q 002217 468 ATSKVIEWAEKTGNGKK-------------------K---VN----------------------Y--------------K 489 (952)
Q Consensus 468 a~~~ii~~l~~~~~~~~-------------------~---~~----------------------~--------------~ 489 (952)
|+..|+++|++.|.+.. . -+ + +
T Consensus 423 a~~~i~~~L~~~g~~~~~~~~~~~~~~~r~g~~vi~~~~~~qwF~~~~~~~~~~~~l~~~~~~~~~P~~~~~~~~~~l~~ 502 (810)
T 1wkb_A 423 VKEAIAKEMLEKGIAEIMYEFAEKNVISRFGNRAVIKIIHDQWFIDYGNPEWKEKARKALERMKILPETRRAQFEAIIDW 502 (810)
T ss_dssp HHHHHHHHHHTTTSEEEEEEESSSCCBCTTSCBCEEEEEEEEEEECTTCHHHHHHHHHHHHTSEEESGGGHHHHHHHHHH
T ss_pred hHHHHHHHHHhCCCeeeEEecCCCCcCCCCCCEEEEEecCCceeEecChHHHHHHHHhhhcccEEECcchhchHHHHhhc
Confidence 99999999998874310 0 00 0 3
Q ss_pred CCceeecccCCCCcccCc---eEeCCCCceeecCCCCcCCCCCcccccCCCCCCCCCCccccccccccccCCCCCc-ccc
Q 002217 490 LRDWLFARQRYWGEPIPV---VFLDGTGETVPLHEAELPLTLPELDDFTPTGTGEPPLSKAVSWVQTTEHSSGKPA-RRE 565 (952)
Q Consensus 490 l~DW~ISRQR~WG~PIPv---~~~~~~~~~~~~~~~~l~v~lp~~~~~~~~G~~~~~l~~~~~w~~~~~~~~g~~~-~re 565 (952)
++||||||||+||+|||+ |.|+. ..++.+++........ +......+|.+. .-.
T Consensus 503 l~Dw~ISRq~~WG~piP~d~~~~~~~------~~~~~iYv~~~~~~~~----------------~~~~~~~~~~~~~~l~ 560 (810)
T 1wkb_A 503 LDKKACARKIGLGTPLPWDPEWVIES------LSDSTIYMAYYTISRH----------------INKLRQEGKLDPEKLT 560 (810)
T ss_dssp CCCEECEESSSBSCEETTEEEEEECT------TTSSSSHHHHHHHHHH----------------HHHHHHTTCCCGGGCC
T ss_pred ccCccccccCCCCCcCCcCcceeccc------CCCCceeeehhhhHHH----------------HHHhHhhcCCCHHHcC
Confidence 679999999999999994 44532 1122222100000000 000000011110 113
Q ss_pred CCCccccccc----c--chhh-eecCCCCchhHhh--hhhhhcCCCceeEecCchhhHHHHHHHHHHHHHHHHhcCcCCC
Q 002217 566 TSTMPQWAGS----C--WYYL-RFMDPKNSKELVD--KTKERYWSPVDVYVGGAEHAVLHLLYARFWHKVLYDIGVVSTK 636 (952)
Q Consensus 566 ~d~lD~WfdS----s--wy~~-~~~~p~~~~~~~~--~~~~~~w~PvDlyv~G~D~~~~HLly~Rfw~~~L~~~~~~~~~ 636 (952)
++++|+||.+ + +.+. ..++|.. .+. ++..++|||+|+|++|+||+.+|+.|.++++..+++.
T Consensus 561 ~~~~d~~~~~~~~~g~~~~~~~~sg~~~~---~~~~~~~~~~~~~p~Di~~~G~D~~~~H~~~~~~~~~~~~~~------ 631 (810)
T 1wkb_A 561 PEFFDYIFLEEFSEDKEKELEKKTGIPAE---IIHEMKEEFEYWYPLDWRCSGKDLIPNHLTFFIFNHVAIFRE------ 631 (810)
T ss_dssp HHHHHHHHHSCCCHHHHHHHHHHHSCCHH---HHHHHHHHHHHHCSCSEEEEEGGGTTTHHHHHHHHHHHHSCG------
T ss_pred ccceeeeeccccccCccccchhhhCCCHH---HHHhhHHHHHhhCCceEEeecccccccHHHHHHHHHHHHcCc------
Confidence 4567777632 1 1100 1122221 111 1224688999999999999999999988887666542
Q ss_pred Ccc-hhhhhhceeccccceeEEecCCCccccCCCCCcccccccccCccccccccCCceeeccCcchhhcccccccccCCC
Q 002217 637 EPF-KCVINQGIILGEMQYMVCKDVDGSYISADSTDTLGEYEQESIPEEKVMKSGDFFVMKDNPNIRLIARAHKMSKSRG 715 (952)
Q Consensus 637 ~PF-k~l~~~G~vl~~~~y~~~~d~~g~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~vl~~~~~~~v~~~g~KMSKSkG 715 (952)
.|| +++++||||+. +|+|||||+|
T Consensus 632 ~~~pk~v~~~G~v~~-------------------------------------------------------~G~KMSKS~G 656 (810)
T 1wkb_A 632 EHWPKGIAVNGFGTL-------------------------------------------------------EGQKMSKSKG 656 (810)
T ss_dssp GGSCCEEEEECCEEE-------------------------------------------------------TTBCCCTTTT
T ss_pred cccccEEEEEeEEEe-------------------------------------------------------CCeehhhcCC
Confidence 355 89999999863 2799999999
Q ss_pred CCCChhhHHhhhCchhhhhhhhhcCCCCCCCCCChhhHHHHHHHHHHHHHHHhccCCCCCCCCCCccCCCCCChHHHHHH
Q 002217 716 NVVNPDDVVTEYGADSLRLYEMFMGPFRDSKTWNTSGIEGVHRFLGRMWRLIVGSSLPDGTFKGGTVVNDEEPTLEQLCT 795 (952)
Q Consensus 716 NvV~P~eii~~YGaDalRl~ll~~~~~~~~~~~s~~~i~~~~r~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~d~~~l~~ 795 (952)
|+|+|.++|++||||++|||+|++++++++.+|+++.++++.++++|+|+++..... .. .+. .......|.+++++
T Consensus 657 Nvv~p~dli~~yGaDalR~~ll~~~~~~~d~~fs~~~~~~~~~~l~rl~n~~~~~~~--~~-~~~-~~~~~~~d~~ll~~ 732 (810)
T 1wkb_A 657 NVLNFIDAIEENGADVVRLYIMSLAEHDSDFDWRRKEVGKLRKQIERFYELISQFAE--YE-VKG-NVELKDIDRWMLHR 732 (810)
T ss_dssp CCCBHHHHHHHHCHHHHHHHHHHHCCTTCCEEECHHHHHHHHHHHHHHHHHHHHHHT--CC-CCS-CCCCCHHHHHHHHH
T ss_pred CcCCHHHHHHHcChHHHHHHHHhcCCCCCCcccCHHHHHHHHHHHHHHHHHHHHHHh--cc-Ccc-cccCCHHHHHHHHH
Confidence 999999999999999999999988999999999999999999999999988732210 00 000 01123357889999
Q ss_pred HHHHHHHHHHHHhcCChHHHHHHH-HHHHHHHhccc------------chhHHHHHHHHHHhCCcchhHHHHHHHHcC
Q 002217 796 LHKCIAKVTEEIEGTRFNTGISAM-MEFINAAYKWE------------KHPRKIIEPFILLLAPYAPHMSEELWFRLG 860 (952)
Q Consensus 796 l~~~i~~v~~~~e~~~f~~ai~~l-~~f~~~~~~~~------------~~~~~vL~~l~~LLaPf~P~iaEElw~~L~ 860 (952)
+++++++++++|++|+|++|+.++ +.+++.++.+. ..++++|+.+++||+|||||+|||||+.||
T Consensus 733 l~~~~~~v~~~~~~~~~~~a~~~~~~~l~~~~n~yi~~~k~~~~~~~~~~l~~~l~~l~~lLaP~~P~~aEelw~~Lg 810 (810)
T 1wkb_A 733 LNKAIKETTNALEEFRTRTAVQWAFYSIMNDLRWYLRRTEGRDDEAKRYVLRTLADVWVRLMAPFTPHICEELWEKLG 810 (810)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHTHHHHHHHHHHHHHTTTCCCHHHHHHHHHHHHHHHHHHTTTSHHHHHHHHHHCC
T ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHHHHHHhcCcchhHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHhcC
Confidence 999999999999999999999865 67777766431 135689999999999999999999999985
No 8
>3u1f_A Methionyl-tRNA synthetase; aminoacyl-tRNA synthetase, AARS, metrs, parasite, protein-IN complex, rossmann-fold, translation; HET: 392; 2.20A {Trypanosoma brucei} PDB: 3u1e_A* 3u1g_A* 3u20_A* 4eg1_A 4eg3_A* 4eg6_A* 4eg8_A* 4eg5_A* 3tun_A* 3u1z_A* 4eg4_A* 4eg7_A* 4ega_A*
Probab=100.00 E-value=2.4e-78 Score=723.39 Aligned_cols=466 Identities=22% Similarity=0.292 Sum_probs=352.7
Q ss_pred CCCCcEEEEcCCCCCCCCCCCCchhHHHHHHHHHHHHHHHcCCcccccccccccChHHHHHHHHhCCCchHHHHHHHHHH
Q 002217 91 TSKPKFYVLDMFPYPSGAGLHVGHPLGYTATDILARLKRMQGYNVLHPMGWDAFGLPAEQYAIETGTHPKITTLRNINRF 170 (952)
Q Consensus 91 ~~k~kf~i~~~~Pypng~~lHiGH~~~~~~~Di~~Ry~r~~G~~V~~~~G~D~~Glpie~~a~~~g~~~~~~~~~~~~~~ 170 (952)
+..++|||+.++||+||. ||||||++++++|+++||+||+||+|+|++||||||+|||.+|+++|++|+++++++++.|
T Consensus 6 ~~~k~f~Ittp~pY~nG~-lHiGHa~~~~~~Dii~Ry~r~~G~~v~~v~G~D~hG~~ie~~a~k~g~~~~e~~~~~~~~~ 84 (542)
T 3u1f_A 6 KVEKVFFVTSPIYYVNAA-PHIGHVYSTLITDVIGRYHRVKGERVFALTGTDEHGQKVAEAAKQKQVSPYDFTTAVAGEF 84 (542)
T ss_dssp -CCCCEEEEEEEEECSSC-CCHHHHHHHHHHHHHHHHHHHTTCCEEEEEEEECCSHHHHHHHHHTTSCHHHHHHHHHHHH
T ss_pred CCCCCEEEeCCCCCCCCc-hhhHHHHHHHHHHHHHHHHHhcCCCccccCccCcChHHHHHHHHHcCCCHHHHHHHHHHHH
Confidence 356789999999999998 9999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHcCCccccCCcccCCChhHHHHHHHHHHHHHHCCceeeeccccccCCCCCcccCchhhccC---------ccccC
Q 002217 171 RTQLKSLGFSYDWNREISTIEPAYYKWTQWIFLQLLKRGLAYQAEVPVNWCPALGTVLANEEVVDG---------VSERG 241 (952)
Q Consensus 171 ~~~l~~lgi~~Dw~~~~~T~~~~~~~~v~~~f~~L~~kGliy~~~~~v~wc~~~~t~ls~~Ev~~~---------~~~~~ 241 (952)
++++++|||++|| +++|+||.|.+.|+++|.+|+++|+||++.++|+|||.|+|+|++.||+++ .|++|
T Consensus 85 ~~~~~~lgi~~D~--~~~T~~~~~~~~v~~~f~~L~~~G~iy~~~~~v~~~~~~~~~l~d~~v~~~~~~~g~~~~~~~~s 162 (542)
T 3u1f_A 85 KKCFEQMDYSIDY--FIRTTNEQHKAVVKELWTKLEQKGDIYLGRYEGWYSISDESFLTPQNITDGVDKDGNPCKVSLES 162 (542)
T ss_dssp HHHHHHHTCCCSE--EEETTCHHHHHHHHHHHHHHHHTTCEEEEEEEEEEETTTTEEECGGGEEEEECTTSCEEEEETTT
T ss_pred HHHHHHhCCccCc--CccCCCHHHHHHHHHHHHHHhhcCcEEecceeEEeeccCcccchhhhhhccccccCccccccCCC
Confidence 9999999999997 678999999999999999999999999999999999999999999999753 46789
Q ss_pred CCCeEEeeccccchhhhhhhhHhhccCCCCCCchHHHHHHHhhhccCCCceEEEEEecCCCCccCcEEEEecCCcchhcc
Q 002217 242 GHPVIRKPMRQWMLKITEYADRLLDDLDDLDWPESVKEMQRNWIGRSEGAEMDFRVLDSDGQERDIKITVYTTRPDTIFG 321 (952)
Q Consensus 242 ~~~~~~~~~~~~~~~i~~y~~~l~~~l~~~~~p~~~~~~~~~~i~~s~~~~v~f~~~~~~~~~~~~~i~i~TT~P~Tl~g 321 (952)
|.+++.+.++||||++++|+++|++++++. ++ .
T Consensus 163 g~~ve~~~~~~~f~~l~~~~~~l~~~~~~~-----------------------------~~-----~------------- 195 (542)
T 3u1f_A 163 GHVVTWVSEENYMFRLSAFRERLLEWYHAN-----------------------------PG-----C------------- 195 (542)
T ss_dssp CCBEEEEEEEEEEECGGGGHHHHHHHHHHC-----------------------------TT-----S-------------
T ss_pred CCcceeeccccceecchhHHHHHHHHHhhc-----------------------------cc-----c-------------
Confidence 999999999999999999988876542110 00 0
Q ss_pred ccEEEECCCCccchhhccccchHHHHHHHHHHhccchhhHhhhhhcccccccceEEecCCCCCcccEEecCcccCCCCCC
Q 002217 322 ATYLVVAPEHPLLSSLVSTTQSQNIEEYKNLASRKSDLERTELQKEKTGVFSGCYARNPASGEAIPIWVADYVLGSYGTG 401 (952)
Q Consensus 322 ~~~v~v~p~~~y~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~P~~~~~~pv~~~~~V~~~~GTG 401 (952)
+
T Consensus 196 ------------------------------------------------------------------~------------- 196 (542)
T 3u1f_A 196 ------------------------------------------------------------------I------------- 196 (542)
T ss_dssp ------------------------------------------------------------------E-------------
T ss_pred ------------------------------------------------------------------c-------------
Confidence 0
Q ss_pred ceEecCCCChhhHHHHHHcCCceeeeecCCCCCCccccccccccceEEcccCcccccccCCCCHHHHHHHHHHHHHHcCC
Q 002217 402 AIMAVPAHDTRDHEFALKFDISIHSVVMPDDESSSQSEKAYTGEGLIVNSSNLISGLDINGLSCQEATSKVIEWAEKTGN 481 (952)
Q Consensus 402 ~V~~~Pah~~~D~~~~~~~~L~i~~vv~~~~~~~~~~~~~y~~~g~l~~~~~~~~~~~~~gl~~~~a~~~ii~~l~~~~~ 481 (952)
.| .......++|+.+
T Consensus 197 ----~P----------------------------------------------------------~~~~~~~~~~~~~--- 211 (542)
T 3u1f_A 197 ----VP----------------------------------------------------------EFRRREVIRAVEK--- 211 (542)
T ss_dssp ----ES----------------------------------------------------------HHHHHHHHHHHHH---
T ss_pred ----CC----------------------------------------------------------chhhHhHhhhhhc---
Confidence 00 0011223344433
Q ss_pred CcceecccCCceeecccCC----CCcccCceEeCCCCceeecCCCCcCCCCCcccccCCCCCCCCCCccccccccccccC
Q 002217 482 GKKKVNYKLRDWLFARQRY----WGEPIPVVFLDGTGETVPLHEAELPLTLPELDDFTPTGTGEPPLSKAVSWVQTTEHS 557 (952)
Q Consensus 482 ~~~~~~~~l~DW~ISRQR~----WG~PIPv~~~~~~~~~~~~~~~~l~v~lp~~~~~~~~G~~~~~l~~~~~w~~~~~~~ 557 (952)
.++||||||||+ ||+|||..- +..+.+--+.+. |. .......+..
T Consensus 212 -------~l~Dw~ISRq~~~~~~WGipiP~~~----~~~~~vw~da~~------------~~--------~~~~~~~~~~ 260 (542)
T 3u1f_A 212 -------GLPDLSVSRARATLHNWAIPVPGNP----DHXVYVWLDALT------------NY--------LTGSRLRVDE 260 (542)
T ss_dssp -------CCCCEECEEEGGGGTTCSCEETTEE----EEEECHHHHHHT------------HH--------HHHHTEEECT
T ss_pred -------cccccCccccccCcCCCCCccCCCc----Ceeeeeeeccch------------hh--------hhhhhccccc
Confidence 378999999998 999999521 111110000000 00 0000000011
Q ss_pred CCCCccccCCCccccccccchhheecCCCCchhHhhhhhhhcCCCceeEecCchhhHHHHHHHHHHHHHHHHhcCcCCCC
Q 002217 558 SGKPARRETSTMPQWAGSCWYYLRFMDPKNSKELVDKTKERYWSPVDVYVGGAEHAVLHLLYARFWHKVLYDIGVVSTKE 637 (952)
Q Consensus 558 ~g~~~~re~d~lD~WfdSswy~~~~~~p~~~~~~~~~~~~~~w~PvDlyv~G~D~~~~HLly~Rfw~~~L~~~~~~~~~~ 637 (952)
+|. +.+..|.|.. ...+|+|++++|+|++.+|.+ +|.+.|...| .+
T Consensus 261 ~g~----~~~~~d~~~~-----------------------~~~~p~d~~~~G~D~~~fh~~---~~~a~l~~~g----~~ 306 (542)
T 3u1f_A 261 SGK----EVSLVDDFNE-----------------------LERFPADVHVIGKDILKFHAI---YWPAFLLSAG----LP 306 (542)
T ss_dssp TSC----EEEECSSGGG-----------------------TTCCSCSEEEEEGGGHHHHHT---HHHHHHHHHT----CC
T ss_pred cCC----cccccchhhh-----------------------hcCCcceEEEecccccccccc---hhHHHHHhhc----cc
Confidence 110 1111111111 123699999999999987744 4777776665 46
Q ss_pred cchhhhhhceeccccceeEEecCCCccccCCCCCcccccccccCccccccccCCceeeccCcchhhcccccccccCCCCC
Q 002217 638 PFKCVINQGIILGEMQYMVCKDVDGSYISADSTDTLGEYEQESIPEEKVMKSGDFFVMKDNPNIRLIARAHKMSKSRGNV 717 (952)
Q Consensus 638 PFk~l~~~G~vl~~~~y~~~~d~~g~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~vl~~~~~~~v~~~g~KMSKSkGNv 717 (952)
|++.+++|||+.. +|+|||||+|||
T Consensus 307 ~~~~v~~hg~l~~-------------------------------------------------------~G~KMSKSlGNv 331 (542)
T 3u1f_A 307 LPKKIVAHGWWTK-------------------------------------------------------DRKKISKSLGNV 331 (542)
T ss_dssp CCSCEEEECCCEE-------------------------------------------------------TTBCCBTTTTBC
T ss_pred ccceeccccceec-------------------------------------------------------CCceeccccCCC
Confidence 8899999998752 389999999999
Q ss_pred CChhhHHhhhCchhhhhhhhhcCCCCCCCCCChhhHHHHHH--HHHHHHHHH---hccCCCCCCCCCC--ccCCCCCChH
Q 002217 718 VNPDDVVTEYGADSLRLYEMFMGPFRDSKTWNTSGIEGVHR--FLGRMWRLI---VGSSLPDGTFKGG--TVVNDEEPTL 790 (952)
Q Consensus 718 V~P~eii~~YGaDalRl~ll~~~~~~~~~~~s~~~i~~~~r--~l~~l~~~~---~~~~~~~~~~~~~--~~~~~~~~d~ 790 (952)
|+|.++|++||||+||||+++.++.++|.+|+++.+.+..+ ++++++|++ +... ..+... ........|+
T Consensus 332 i~p~~~i~~ygaD~lR~~l~~~~~~~~d~~fs~~~~~~~~n~~l~n~l~N~~~r~~~~~---~~~~~~~~~~~~~~~~d~ 408 (542)
T 3u1f_A 332 FDPVEKAEEFGYDALKYFLLRESGFSDDGDYSDKNMIARLNGELADTLGNLVMRCTSAK---INVNGEWPSPAAYTEEDE 408 (542)
T ss_dssp CCHHHHHHHHCHHHHHHHHHHHCCTTSCCEECHHHHHHHHHHTTTTTHHHHHHHHHCTT---TSTTSBCCCCCCCCHHHH
T ss_pred CChhHHHhhcCchHHHHHHHhcCcccccccccHHHHHHHhhhHHHHHHHHHHHHHHHhh---hcccCCCCccchhhHHHH
Confidence 99999999999999999999989999999999999987654 455555544 2211 111110 0112234588
Q ss_pred HHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHhcccc--------------------hhHHHHHHHHHHhCCcchh
Q 002217 791 EQLCTLHKCIAKVTEEIEGTRFNTGISAMMEFINAAYKWEK--------------------HPRKIIEPFILLLAPYAPH 850 (952)
Q Consensus 791 ~~l~~l~~~i~~v~~~~e~~~f~~ai~~l~~f~~~~~~~~~--------------------~~~~vL~~l~~LLaPf~P~ 850 (952)
++++++++++++++++|++|+|++|+++|++|++.+|.+.+ .+.++|+.+++||+|||||
T Consensus 409 ~il~~l~~~~~~~~~~~~~~~~~~a~~~i~~~~~~~n~Y~~~~~pw~l~k~d~~~~~~~l~~~~~~l~~~~~ll~P~~P~ 488 (542)
T 3u1f_A 409 SLIQLIKDLPGTADHYYLIPDIQKAIIAVFDVLRAINAYVTDMAPWKLVKTDPERLRTVLYITLEGVRVTTLLLSPILPR 488 (542)
T ss_dssp HHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHTTTSHH
T ss_pred HHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCchhhhcCCHHHHHHHHHHHHHHHHHHHHHHHhHhHH
Confidence 99999999999999999999999999999999977665321 1125778889999999999
Q ss_pred HHHHHHHHcCCC----CCccccCCCCC
Q 002217 851 MSEELWFRLGHS----NSLAYESFPKA 873 (952)
Q Consensus 851 iaEElw~~L~~~----~sV~~~~WP~~ 873 (952)
+|||||+.||.. .++....|+..
T Consensus 489 ~aeei~~~Lg~~~~~~~~~~~~~~~~l 515 (542)
T 3u1f_A 489 KSVVIFDMLGVPEVHRKGIENFEFGAV 515 (542)
T ss_dssp HHHHHHHHHTCCGGGGSSGGGGSTTCS
T ss_pred HHHHHHHHCCCCCccccchhhccccCC
Confidence 999999999853 24444556554
No 9
>1rqg_A Methionyl-tRNA synthetase; translation, dimerization, ligase; 2.90A {Pyrococcus abyssi} SCOP: a.27.1.1 c.26.1.1 g.41.1.1
Probab=100.00 E-value=2.6e-76 Score=721.18 Aligned_cols=456 Identities=22% Similarity=0.362 Sum_probs=367.9
Q ss_pred CcEEEEcCCCCCCCCCCCCchhHH-HHHHHHHHHHHHHcCCcccccccccccChHHHHHHHHhCCCchHHHHHHHHHHHH
Q 002217 94 PKFYVLDMFPYPSGAGLHVGHPLG-YTATDILARLKRMQGYNVLHPMGWDAFGLPAEQYAIETGTHPKITTLRNINRFRT 172 (952)
Q Consensus 94 ~kf~i~~~~Pypng~~lHiGH~~~-~~~~Di~~Ry~r~~G~~V~~~~G~D~~Glpie~~a~~~g~~~~~~~~~~~~~~~~ 172 (952)
++|||+.+|||+||. |||||+++ ++++|+++||+||+||+|+|++||||||+|||.+|++.|++|+++++++++.|++
T Consensus 2 ~~~~itt~~Py~nG~-lHiGHa~~~~i~~DiiaRy~rm~G~~V~~v~G~D~hG~pie~~A~k~G~~p~e~~~~~~~~~~~ 80 (722)
T 1rqg_A 2 VRYMVTSALPYANGP-IHAGHLAGAYLPADIFVRYLRLKGEDVVFICGTDEHGTPISFRALKEGRSPREIVDEFHEQIKI 80 (722)
T ss_dssp CEEEEEECCCBTTSC-CBHHHHHHHTHHHHHHHHHHHHTTCEEEEEEEEBCCSHHHHHHHHHHTCCHHHHHHHHHHHHHH
T ss_pred CCEEEecCCCCCCCc-hhhchhhccHHHHHHHHHHHHhcCCceEecceeCCCCHHHHHHHHHcCCCHHHHHHHHHHHHHH
Confidence 579999999999998 99999999 9999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHcCCccccCCcccCCChhHHHHHHHHHHHHHHCCceeeeccccccCCCCCcccCch---------------------
Q 002217 173 QLKSLGFSYDWNREISTIEPAYYKWTQWIFLQLLKRGLAYQAEVPVNWCPALGTVLANE--------------------- 231 (952)
Q Consensus 173 ~l~~lgi~~Dw~~~~~T~~~~~~~~v~~~f~~L~~kGliy~~~~~v~wc~~~~t~ls~~--------------------- 231 (952)
+|++|||++|| +++|++|.|.+.++++|.+|+++|+||++.++|+|||.|+|+|++.
T Consensus 81 ~~~~lgis~D~--~~rT~d~~~~~~v~~~f~~L~~kG~iY~~~~~v~y~~~~~tfl~d~~v~gtcP~c~~~~~~Gd~c~~ 158 (722)
T 1rqg_A 81 TFQRAKISFDF--FGRTELPIHYKLSQEFFLKAYENGHLVKKVTKQAYCEHDKMFLPDRFVIGTCPYCGAEDQKGDQCEV 158 (722)
T ss_dssp HHHHHTCCCSE--EEETTSHHHHHHHHHHHHHHHHTTCEEEEEEEEEEBTTTTBCCCGGGCCSBCSSSCCSCCCTTTCSS
T ss_pred HHHHhCCCCCC--CeeCCCHHHHHHHHHHHHHHHHCCCEEecceeeeecCCCCcCcchhhcccccCccCCccCCcchhhh
Confidence 99999998885 7899999999999999999999999999999999999999887764
Q ss_pred --------hhccCccccCCCCeEEeeccccchhhhhhhhHhhccCCCCCCchHHHHHHHhhhccCCCceEEEEEecCCCC
Q 002217 232 --------EVVDGVSERGGHPVIRKPMRQWMLKITEYADRLLDDLDDLDWPESVKEMQRNWIGRSEGAEMDFRVLDSDGQ 303 (952)
Q Consensus 232 --------Ev~~~~~~~~~~~~~~~~~~~~~~~i~~y~~~l~~~l~~~~~p~~~~~~~~~~i~~s~~~~v~f~~~~~~~~ 303 (952)
|+++++|++||.+++.+.++||||++++|+++|++++++..||+.+++++.+||+
T Consensus 159 ~G~~l~~~~l~~p~~~r~g~~v~~~~~~qwF~~l~~~~~~l~~~~~~~~wp~~~~~~~~~wl~----------------- 221 (722)
T 1rqg_A 159 CGRPLTPEILINPRCAICGRPISFRDSAHYYIKMQDFAERLKRWIEKQPWKPNVKNMVLSWIE----------------- 221 (722)
T ss_dssp SCCCCCTTSSBSCBCTTTCCBCEEEEEEEEEECGGGTHHHHHHHHHSSCCCHHHHHHHHHHHT-----------------
T ss_pred cccccChhhccCCcccCCCcEeEEEEeccEEEEhHHHHHHHHHHHHhCCCCHHHHHHHHHHHH-----------------
Confidence 5567789999999999999999999999999999999877799888777777641
Q ss_pred ccCcEEEEecCCcchhccccEEEECCCCccchhhccccchHHHHHHHHHHhccchhhHhhhhhcccccccceEEecCCCC
Q 002217 304 ERDIKITVYTTRPDTIFGATYLVVAPEHPLLSSLVSTTQSQNIEEYKNLASRKSDLERTELQKEKTGVFSGCYARNPASG 383 (952)
Q Consensus 304 ~~~~~i~i~TT~P~Tl~g~~~v~v~p~~~y~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~P~~~ 383 (952)
T Consensus 222 -------------------------------------------------------------------------------- 221 (722)
T 1rqg_A 222 -------------------------------------------------------------------------------- 221 (722)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CcccEEecCcccCCCCCCceEecCCCChhhHHHHHHcCCceeeeecCCCCCCccccccccccceEEcccCcccccccCCC
Q 002217 384 EAIPIWVADYVLGSYGTGAIMAVPAHDTRDHEFALKFDISIHSVVMPDDESSSQSEKAYTGEGLIVNSSNLISGLDINGL 463 (952)
Q Consensus 384 ~~~pv~~~~~V~~~~GTG~V~~~Pah~~~D~~~~~~~~L~i~~vv~~~~~~~~~~~~~y~~~g~l~~~~~~~~~~~~~gl 463 (952)
T Consensus 222 -------------------------------------------------------------------------------- 221 (722)
T 1rqg_A 222 -------------------------------------------------------------------------------- 221 (722)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CHHHHHHHHHHHHHHcCCCcceecccCCceeecccCCCCcccCceEeCCCCceeecCCCCcCCCCCcccccCCCCCCCCC
Q 002217 464 SCQEATSKVIEWAEKTGNGKKKVNYKLRDWLFARQRYWGEPIPVVFLDGTGETVPLHEAELPLTLPELDDFTPTGTGEPP 543 (952)
Q Consensus 464 ~~~~a~~~ii~~l~~~~~~~~~~~~~l~DW~ISRQR~WG~PIPv~~~~~~~~~~~~~~~~l~v~lp~~~~~~~~G~~~~~ 543 (952)
-.++|||||||++||+|||++++..
T Consensus 222 ------------------------~gl~dw~ISR~~~WG~piP~~~~g~------------------------------- 246 (722)
T 1rqg_A 222 ------------------------EGLEERAITRDLNWGIPVPLDEEDM------------------------------- 246 (722)
T ss_dssp ------------------------TCCCCEECEECCSSSCBCSCCCSSS-------------------------------
T ss_pred ------------------------CCCcccceeccccCccccCccccCC-------------------------------
Confidence 0167999999999999999854210
Q ss_pred CccccccccccccCCCCCccccCCCccccccccchhheec--CCCCchhHhhhhhhhcCC--C---ceeEecCchhhHHH
Q 002217 544 LSKAVSWVQTTEHSSGKPARRETSTMPQWAGSCWYYLRFM--DPKNSKELVDKTKERYWS--P---VDVYVGGAEHAVLH 616 (952)
Q Consensus 544 l~~~~~w~~~~~~~~g~~~~re~d~lD~WfdSswy~~~~~--~p~~~~~~~~~~~~~~w~--P---vDlyv~G~D~~~~H 616 (952)
+..++++|||+..-|+... ++.... .......+|. + .++++.|+|++.+|
T Consensus 247 ---------------------~~~~iyvW~da~i~y~~~~~~~~~~~g--~~~~~~~~w~~pd~~~~~~h~~GkDii~fH 303 (722)
T 1rqg_A 247 ---------------------KGKVLYVWFEAPIGYISITIEHFKRIG--KPNEWKKYWLNIDGQTRVIHFIGKDNIPFH 303 (722)
T ss_dssp ---------------------TTCEECHHHHGGGHHHHHHHHHHHHTT--CTTTTHHHHBCSSCCEEEEEEEEGGGHHHH
T ss_pred ---------------------CCCEEEEEeccccchhhhHHHHHhhcC--CchHHHhccCCCCCCCeeEEEccccccccc
Confidence 0136789998764333110 000000 0001224664 2 23899999999888
Q ss_pred HHHHHHHHHHHHHhcC------c-CCCCcchhhhhhceeccccceeEEecCCCccccCCCCCcccccccccCcccccccc
Q 002217 617 LLYARFWHKVLYDIGV------V-STKEPFKCVINQGIILGEMQYMVCKDVDGSYISADSTDTLGEYEQESIPEEKVMKS 689 (952)
Q Consensus 617 Lly~Rfw~~~L~~~~~------~-~~~~PFk~l~~~G~vl~~~~y~~~~d~~g~~~~~~~~~~~~~~~~~~~~~~~v~~~ 689 (952)
. .+|...|...+. + ....| +++++||||+.
T Consensus 304 ~---~~wpA~l~~~~~~l~~d~~rg~~~P-k~v~~hG~v~~--------------------------------------- 340 (722)
T 1rqg_A 304 A---IFWPAFLMAYGKYKDEEVEAEWNLP-YDIPANEYLTL--------------------------------------- 340 (722)
T ss_dssp H---THHHHHHHTTCCBCSSSCCBCBCCC-SBCCEECCEEE---------------------------------------
T ss_pred h---hhhHHHHhccCCCcccccccCCCCC-CEEEEeeeEEe---------------------------------------
Confidence 5 457666655442 1 12577 99999999863
Q ss_pred CCceeeccCcchhhcccccccccCCCCCCChhhHHhhhCchhhhhhhhhcCCCCCCCCCChhhHHH---------HHHHH
Q 002217 690 GDFFVMKDNPNIRLIARAHKMSKSRGNVVNPDDVVTEYGADSLRLYEMFMGPFRDSKTWNTSGIEG---------VHRFL 760 (952)
Q Consensus 690 ~~~~vl~~~~~~~v~~~g~KMSKSkGNvV~P~eii~~YGaDalRl~ll~~~~~~~~~~~s~~~i~~---------~~r~l 760 (952)
+|+|||||+||+|+|.++|++||+|++|||+++.++.++|.+|+++.+.. ..|++
T Consensus 341 ----------------~G~KMSKS~GNvV~p~d~i~~ygaDalR~~ll~~~~~~~D~~fs~~~~~~~~n~~l~~~l~N~~ 404 (722)
T 1rqg_A 341 ----------------EGKKFSTSRNWAIWVHEFLDVFPADYLRYYLTTIMPETRDSDFSFSDFKVRINEELVNNLGNFV 404 (722)
T ss_dssp ----------------TTEECBTTTTBSCBHHHHTTTSCHHHHHHHHHHTCCSSSCEEECHHHHHHHHHHTTTTTHHHHH
T ss_pred ----------------CCeeeeeeCCCcCCHHHHHHhcCchHHHHHHHhcCCCCCCCccCHHHHHHHHHHHHHHHHHHHH
Confidence 28999999999999999999999999999999988999999999887765 44677
Q ss_pred HHHHHHHhccCCCCCCCCCCccCCCCCChHHHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHhcccc---------
Q 002217 761 GRMWRLIVGSSLPDGTFKGGTVVNDEEPTLEQLCTLHKCIAKVTEEIEGTRFNTGISAMMEFINAAYKWEK--------- 831 (952)
Q Consensus 761 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~d~~~l~~l~~~i~~v~~~~e~~~f~~ai~~l~~f~~~~~~~~~--------- 831 (952)
+|+++++.... +..... .......|.++++++++++++++++|++|+|++|++++|+|++..|.+..
T Consensus 405 ~R~~~~~~k~~--~~~~~~--~~~~~~~d~~ll~~l~~~~~~v~~~~e~~~f~~A~~~i~~~~~~~n~Yi~~~kpw~~~k 480 (722)
T 1rqg_A 405 HRALTFVNRYF--DGVVPE--RGELDELDREALEEIEKAFKEVGELIMNYRFKDALKRVMSLASFGNRYFDHKQPWKTAK 480 (722)
T ss_dssp HHHHHHHHHHS--TTBCCC--CCCCCHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTTCHHHHTT
T ss_pred HHHHHHHHHhc--CCCCCC--cccCCHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHhcCchhhcC
Confidence 77777764321 010100 00113357889999999999999999999999999999999976665311
Q ss_pred -----------hhHHHHHHHHHHhCCcchhHHHHHHHHcCCCCCccccCCCCC
Q 002217 832 -----------HPRKIIEPFILLLAPYAPHMSEELWFRLGHSNSLAYESFPKA 873 (952)
Q Consensus 832 -----------~~~~vL~~l~~LLaPf~P~iaEElw~~L~~~~sV~~~~WP~~ 873 (952)
.+.++++.+++||+|||||+||+||+.|+... + ..||..
T Consensus 481 ~~~~~~~~vl~~l~~~l~~l~~lL~P~~P~~aeei~~~L~~~~-~--~~w~~~ 530 (722)
T 1rqg_A 481 EDKVRTGTTVNISLQIVKALGILLEPFLPDASEKIWHLLNLDE-V--KRWEFR 530 (722)
T ss_dssp TCHHHHHHHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHTTCCS-C--CCSSCC
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHhhccccHHHHHHHHHcCCCc-c--cCchhc
Confidence 12367899999999999999999999998653 2 578763
No 10
>2x1l_A Methionyl-tRNA synthetase; nucleotide-binding, protein biosynthesis, ligase, aminoacyl- synthetase; HET: ADN CXS; 2.30A {Mycobacterium smegmatis} PDB: 2x1m_A*
Probab=100.00 E-value=4e-74 Score=683.69 Aligned_cols=444 Identities=24% Similarity=0.412 Sum_probs=356.6
Q ss_pred CCCCcEEEEcCCCCCCCCCCCCchhHHHHHHHHHHHHHHHcCCcccccccccccChHHHHHHHHhCCCchHHHHHHHHHH
Q 002217 91 TSKPKFYVLDMFPYPSGAGLHVGHPLGYTATDILARLKRMQGYNVLHPMGWDAFGLPAEQYAIETGTHPKITTLRNINRF 170 (952)
Q Consensus 91 ~~k~kf~i~~~~Pypng~~lHiGH~~~~~~~Di~~Ry~r~~G~~V~~~~G~D~~Glpie~~a~~~g~~~~~~~~~~~~~~ 170 (952)
.+++.|++++++|||||. |||||+++++++|+++||+||+||+|++++|||+||+|||.+|++.|.+++++++++++.|
T Consensus 9 ~~~~~~~i~t~~P~~ng~-lHiGHa~~~i~~D~l~R~~r~~G~~V~~~~g~D~~G~~i~~~a~~~g~~~~~~~~~~~~~~ 87 (524)
T 2x1l_A 9 GGSEPFYITTAIAYPNGV-PHIGHAYEYIATDAIARFKRLDGYDVRYLTGTDVHGQKMAETAAKEGIPAAELARRNSDVF 87 (524)
T ss_dssp --CCEEEEEECCBCCSSC-CCHHHHHHHHHHHHHHHHHHHTTCEEEEEEEECCCSHHHHHHHHHHTSCHHHHHHHHHHHH
T ss_pred CCCCCEEEeeCCCCCCCC-cccchhHHHHHHHHHHHHHHhcCCceeeeCCcCcccHHHHHHHHHcCCCHHHHHHHHHHHH
Confidence 467899999999999998 9999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHcCCccccCCcccCCChhHHHHHHHHHHHHHHCCceeeeccccccCCCCCcccCchhhccC----ccc-cCCCCe
Q 002217 171 RTQLKSLGFSYDWNREISTIEPAYYKWTQWIFLQLLKRGLAYQAEVPVNWCPALGTVLANEEVVDG----VSE-RGGHPV 245 (952)
Q Consensus 171 ~~~l~~lgi~~Dw~~~~~T~~~~~~~~v~~~f~~L~~kGliy~~~~~v~wc~~~~t~ls~~Ev~~~----~~~-~~~~~~ 245 (952)
++++++|||++| .+++|+++.|.+.++++|.+|+++|+||++.++|+||+.|+|++++.|++++ .|+ +||.++
T Consensus 88 ~~~~~~lgi~~d--~~~~t~~~~~~~~v~~~~~~L~~~G~iY~~~~~v~~~~~~~t~l~~~ev~~g~~G~~c~~~~g~~v 165 (524)
T 2x1l_A 88 QRLQEKLNISFD--RFIRTSDADHYEASKAIWKRMADAGDIYLDAYKGWYSIRDERFFTENETTEQPDGTRIATETGAPV 165 (524)
T ss_dssp HHHHHHTTCCCS--EEEETTSHHHHHHHHHHHHHHHHTTCEEEEEEEEEEETTTTEEECGGGEEECTTSCEEETTTCCBE
T ss_pred HHHHHHcCCcCC--CCeecCCHHHHHHHHHHHHHHHHCCCEEeeeeeeeccCccCccccHHHhccCCCCCccccccCCcc
Confidence 999999999877 8899999999999999999999999999999999999999999999999765 466 899999
Q ss_pred EEeeccccchhhhhhhhHhhccCCCCCCchHHHHHHHhhhccCCCceEEEEEecCCCCccCcEEEEecCCcchhccccEE
Q 002217 246 IRKPMRQWMLKITEYADRLLDDLDDLDWPESVKEMQRNWIGRSEGAEMDFRVLDSDGQERDIKITVYTTRPDTIFGATYL 325 (952)
Q Consensus 246 ~~~~~~~~~~~i~~y~~~l~~~l~~~~~p~~~~~~~~~~i~~s~~~~v~f~~~~~~~~~~~~~i~i~TT~P~Tl~g~~~v 325 (952)
+.+...||||++++|++++++.+++. |..
T Consensus 166 ~~~~~~qwF~~l~~~~~~l~~~~~~~--------------------------------------------~~~------- 194 (524)
T 2x1l_A 166 TWTEEQTYFFRLSAYTDRLLALYEEH--------------------------------------------PEF------- 194 (524)
T ss_dssp EEEEEEEEEECGGGSHHHHHHHHHHC--------------------------------------------GGG-------
T ss_pred eEEecCCeEeeHHHHHHHHHHHHHhC--------------------------------------------CCe-------
Confidence 99999999999999998876543100 000
Q ss_pred EECCCCccchhhccccchHHHHHHHHHHhccchhhHhhhhhcccccccceEEecCCCCCcccEEecCcccCCCCCCceEe
Q 002217 326 VVAPEHPLLSSLVSTTQSQNIEEYKNLASRKSDLERTELQKEKTGVFSGCYARNPASGEAIPIWVADYVLGSYGTGAIMA 405 (952)
Q Consensus 326 ~v~p~~~y~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~P~~~~~~pv~~~~~V~~~~GTG~V~~ 405 (952)
+.|+
T Consensus 195 -i~p~--------------------------------------------------------------------------- 198 (524)
T 2x1l_A 195 -IGPD--------------------------------------------------------------------------- 198 (524)
T ss_dssp -EESH---------------------------------------------------------------------------
T ss_pred -eCCH---------------------------------------------------------------------------
Confidence 0000
Q ss_pred cCCCChhhHHHHHHcCCceeeeecCCCCCCccccccccccceEEcccCcccccccCCCCHHHHHHHHHHHHHHcCCCcce
Q 002217 406 VPAHDTRDHEFALKFDISIHSVVMPDDESSSQSEKAYTGEGLIVNSSNLISGLDINGLSCQEATSKVIEWAEKTGNGKKK 485 (952)
Q Consensus 406 ~Pah~~~D~~~~~~~~L~i~~vv~~~~~~~~~~~~~y~~~g~l~~~~~~~~~~~~~gl~~~~a~~~ii~~l~~~~~~~~~ 485 (952)
..+..+..|+.
T Consensus 199 -------------------------------------------------------------~~~~~~~~~~~-------- 209 (524)
T 2x1l_A 199 -------------------------------------------------------------ARRNEIVSFVS-------- 209 (524)
T ss_dssp -------------------------------------------------------------HHHHHHHHHHT--------
T ss_pred -------------------------------------------------------------HHHHHHHHHHH--------
Confidence 00111122221
Q ss_pred ecccCCceeecccCC-CCcccCceEeCCCCceeecCCCCcCCCCCcccccCCCCCCCCCCccccccccccccCCCCCccc
Q 002217 486 VNYKLRDWLFARQRY-WGEPIPVVFLDGTGETVPLHEAELPLTLPELDDFTPTGTGEPPLSKAVSWVQTTEHSSGKPARR 564 (952)
Q Consensus 486 ~~~~l~DW~ISRQR~-WG~PIPv~~~~~~~~~~~~~~~~l~v~lp~~~~~~~~G~~~~~l~~~~~w~~~~~~~~g~~~~r 564 (952)
..++||||||||+ ||+|||. ++
T Consensus 210 --~~l~Dw~iSRqr~~WG~~iP~--~~----------------------------------------------------- 232 (524)
T 2x1l_A 210 --GGLKDLSISRTTFDWGVPVPD--HP----------------------------------------------------- 232 (524)
T ss_dssp --TCCCCEECEESSCCSSCEETT--EE-----------------------------------------------------
T ss_pred --cCCcccceECCCCCcCccCCC--CC-----------------------------------------------------
Confidence 2488999999996 9999992 10
Q ss_pred cCCCccccccccchhh-eecCCCCchhHhhhhhhhcCCCceeEecCchhhHHHHHHHHHHHHHHHHhcCcCCCCcchhhh
Q 002217 565 ETSTMPQWAGSCWYYL-RFMDPKNSKELVDKTKERYWSPVDVYVGGAEHAVLHLLYARFWHKVLYDIGVVSTKEPFKCVI 643 (952)
Q Consensus 565 e~d~lD~WfdSswy~~-~~~~p~~~~~~~~~~~~~~w~PvDlyv~G~D~~~~HLly~Rfw~~~L~~~~~~~~~~PFk~l~ 643 (952)
.+||||||||.|.|+ ..++|.+....+ ..|+|+|++++|+||+.+|.+ +|...+...| .+||++++
T Consensus 233 -~~~~yvWfds~~~~~~~~g~p~~~~~~~-----~~~~p~di~~~G~D~~~fh~~---~~~a~l~~~g----~~~~~~v~ 299 (524)
T 2x1l_A 233 -DHVMYVWVDALTNYLTGVGFPDTESESF-----RRYWPADLHMIGKDIIRFHTV---YWPAFLMSAG----LPLPKRIF 299 (524)
T ss_dssp -EEEECHHHHHHTHHHHTTTTTCTTSHHH-----HHHCSCSEEEEEGGGHHHHHT---HHHHHHHHHT----CCCCSCEE
T ss_pred -CCEEEEecCCchHHHHHcCCCCCchHHH-----HhhCCCeEEEEeechhHhHHH---HHHHHHHHCC----CCCCcEEE
Confidence 137899999986654 345676432222 345699999999999977754 5666666555 47899999
Q ss_pred hhceeccccceeEEecCCCccccCCCCCcccccccccCccccccccCCceeeccCcchhhcccccccccCCCCCCChhhH
Q 002217 644 NQGIILGEMQYMVCKDVDGSYISADSTDTLGEYEQESIPEEKVMKSGDFFVMKDNPNIRLIARAHKMSKSRGNVVNPDDV 723 (952)
Q Consensus 644 ~~G~vl~~~~y~~~~d~~g~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~vl~~~~~~~v~~~g~KMSKSkGNvV~P~ei 723 (952)
+||||+.+ |+|||||+||+|+|.++
T Consensus 300 ~hG~v~~~-------------------------------------------------------G~KMSKS~GN~v~p~d~ 324 (524)
T 2x1l_A 300 AHGWLLNR-------------------------------------------------------GEKMSKSIGNVVDPVNL 324 (524)
T ss_dssp EECCEEEC-------------------------------------------------------SCSEETTTEESSCHHHH
T ss_pred ECcEEEeC-------------------------------------------------------CcccCCcCCCCCCHHHH
Confidence 99998742 79999999999999999
Q ss_pred HhhhCchhhhhhhhhcCCCCCCCCCChhhHHHHHH---------HHHHHHHHHhccCCCCCCCCCCccCCCCCChHHHHH
Q 002217 724 VTEYGADSLRLYEMFMGPFRDSKTWNTSGIEGVHR---------FLGRMWRLIVGSSLPDGTFKGGTVVNDEEPTLEQLC 794 (952)
Q Consensus 724 i~~YGaDalRl~ll~~~~~~~~~~~s~~~i~~~~r---------~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~d~~~l~ 794 (952)
|++||+|++|||+++.++++++.+|+++.+.++.+ ++++++.++.... . ..... .......|.++++
T Consensus 325 i~~~g~DalR~~ll~~~~~~~d~~fs~~~l~~~~~~~l~n~l~n~~~r~~~~~~~~~-~-~~~~~--~~~~~~~d~~l~~ 400 (524)
T 2x1l_A 325 VDTFGLDQVRYFLLREVPFGQDGSYNEDAIIGRVNADLANELGNLAQRSLSMVAKNL-G-AAVPD--PGEFTDEDTALLA 400 (524)
T ss_dssp HHHHCHHHHHHHHHHHSCTTSCEEECHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHS-T-TBCCC--CCCCCHHHHHHHH
T ss_pred HHHcChHHHHHHHHhcCCCCCCCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc-C-CCCCC--ccccchhHHHHHH
Confidence 99999999999999878899999999999887653 3444444432110 0 00000 0112345788899
Q ss_pred HHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHhccc----------c--------------hhHHHHHHHHHHhCCcchh
Q 002217 795 TLHKCIAKVTEEIEGTRFNTGISAMMEFINAAYKWE----------K--------------HPRKIIEPFILLLAPYAPH 850 (952)
Q Consensus 795 ~l~~~i~~v~~~~e~~~f~~ai~~l~~f~~~~~~~~----------~--------------~~~~vL~~l~~LLaPf~P~ 850 (952)
+++++++++.++|++|+|+.|++.+++|++.++.+. . .+.++|+.+++||+|||||
T Consensus 401 ~l~~~~~~v~~a~~~~~~~~a~~~l~~l~~~~n~y~~~~k~w~l~~~~~~~~~~~~~~~l~~l~~~l~~~~~ll~P~~P~ 480 (524)
T 2x1l_A 401 AADALLERVREHFDVPAMHLALEAIWSVLGAANRYFSAQEPWVLRKSDAAEDQQRFRTVLYTTLEVVRIASLLLQPVMPE 480 (524)
T ss_dssp HHHTHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHCHHHHTTCCSHHHHHHHHHHHHHHHHHHHHHHHHTTTTCHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHhcCChhhhcCccccCHHHHHHHHHHHHHHHHHHHHHHhhhhhH
Confidence 999999999999999999999999999998765431 1 1235788899999999999
Q ss_pred HHHHHHHHcCCC
Q 002217 851 MSEELWFRLGHS 862 (952)
Q Consensus 851 iaEElw~~L~~~ 862 (952)
+|||||+.|+.+
T Consensus 481 ~aeei~~~L~~~ 492 (524)
T 2x1l_A 481 STAKLLDLLGQP 492 (524)
T ss_dssp HHHHHHHHTTCC
T ss_pred HHHHHHHHcCCC
Confidence 999999999864
No 11
>2d5b_A Methionyl-tRNA synthetase; rossmann fold, class 1A AARS, isomerase, structural genomics, NPPSFA; 1.80A {Thermus thermophilus} SCOP: a.27.1.1 c.26.1.1 PDB: 1woy_A 1a8h_A 2d54_A
Probab=100.00 E-value=3.9e-73 Score=672.00 Aligned_cols=436 Identities=24% Similarity=0.386 Sum_probs=351.9
Q ss_pred CCcEEEEcCCCCCCCCCCCCchhHHHHHHHHHHHHHHHcCCcccccccccccChHHHHHHHHhCCCchHHHHHHHHHHHH
Q 002217 93 KPKFYVLDMFPYPSGAGLHVGHPLGYTATDILARLKRMQGYNVLHPMGWDAFGLPAEQYAIETGTHPKITTLRNINRFRT 172 (952)
Q Consensus 93 k~kf~i~~~~Pypng~~lHiGH~~~~~~~Di~~Ry~r~~G~~V~~~~G~D~~Glpie~~a~~~g~~~~~~~~~~~~~~~~ 172 (952)
+++|||+.++|||||. |||||+++++++|+++||+||+||+|++++|||+||+||+.+|.+.|+++.++++++++.|++
T Consensus 2 ~~~~~i~~p~py~~g~-lHiGH~r~~~~~D~~~R~~r~~G~~V~~~~g~D~~G~~i~~~a~~~g~~~~~~~~~~~~~~~~ 80 (500)
T 2d5b_A 2 EKVFYVTTPIYYVNAE-PHLGHAYTTVVADFLARWHRLDGYRTFFLTGTDEHGETVYRAAQAAGEDPKAFVDRVSGRFKR 80 (500)
T ss_dssp CCEEEEECCCEETTSC-CCHHHHHHHHHHHHHHHHHHHTTCEEEEEEEEECCSHHHHHHHHHHTSCHHHHHHHHHHHHHH
T ss_pred CCcEEEecCCCCCCCC-cchhhHHHHHHHHHHHHHHHcCCCceeeecccCCchHHHHHHHHHcCCCHHHHHHHHHHHHHH
Confidence 4689999999999998 999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHcCCccccCCcccCCChhHHHHHHHHHHHHHHCCceeeeccccccCCCCCcccCchhhccCccccCCCCeEEeeccc
Q 002217 173 QLKSLGFSYDWNREISTIEPAYYKWTQWIFLQLLKRGLAYQAEVPVNWCPALGTVLANEEVVDGVSERGGHPVIRKPMRQ 252 (952)
Q Consensus 173 ~l~~lgi~~Dw~~~~~T~~~~~~~~v~~~f~~L~~kGliy~~~~~v~wc~~~~t~ls~~Ev~~~~~~~~~~~~~~~~~~~ 252 (952)
++++||+++| .+++|+++.|.+.++++|.+|+++|+||++.++++|||.|+|++++.|+.+|.|++||.+++.+...|
T Consensus 81 ~~~~lgi~~d--~~~~t~~~~~~~~~~~~~~~L~~~G~iy~~~~~~~~~~~~~~~~~~~~l~~g~c~~~~~~v~~~~~~~ 158 (500)
T 2d5b_A 81 AWDLLGIAYD--DFIRTTEERHKKVVQLVLKKVYEAGDIYYGEYEGLYCVSCERFYTEKELVEGLCPIHGRPVERRKEGN 158 (500)
T ss_dssp HHHHTTCCCS--EEEETTSHHHHHHHHHHHHHHHHTTCEEEEEEEEEEETTTTEECCTTTSBTTBCTTTCSBCEEEEEEE
T ss_pred HHHHhCCcCC--CCcccCCHHHHHHHHHHHHHHHHCCCEEecceEEecCCCcCcccCchhccCCcCCCCCCeeeEEecCc
Confidence 9999999877 68899999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cchhhhhhhhHhhccCCCCCCchHHHHHHHhhhccCCCceEEEEEecCCCCccCcEEEEecCCcchhccccEEEECCCCc
Q 002217 253 WMLKITEYADRLLDDLDDLDWPESVKEMQRNWIGRSEGAEMDFRVLDSDGQERDIKITVYTTRPDTIFGATYLVVAPEHP 332 (952)
Q Consensus 253 ~~~~i~~y~~~l~~~l~~~~~p~~~~~~~~~~i~~s~~~~v~f~~~~~~~~~~~~~i~i~TT~P~Tl~g~~~v~v~p~~~ 332 (952)
|||++++|++++++.+++. |.. +.|+
T Consensus 159 wf~~l~~~~~~l~~~~~~~--------------------------------------------~~~--------~~p~-- 184 (500)
T 2d5b_A 159 YFFRMEKYRPWLQEYIQEN--------------------------------------------PDL--------IRPE-- 184 (500)
T ss_dssp EEECGGGGHHHHHHHHHTC--------------------------------------------TTS--------EESH--
T ss_pred eEEEcHHHHHHHHHHHHhC--------------------------------------------CCe--------eCCH--
Confidence 9999999998876643210 000 0000
Q ss_pred cchhhccccchHHHHHHHHHHhccchhhHhhhhhcccccccceEEecCCCCCcccEEecCcccCCCCCCceEecCCCChh
Q 002217 333 LLSSLVSTTQSQNIEEYKNLASRKSDLERTELQKEKTGVFSGCYARNPASGEAIPIWVADYVLGSYGTGAIMAVPAHDTR 412 (952)
Q Consensus 333 y~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~P~~~~~~pv~~~~~V~~~~GTG~V~~~Pah~~~ 412 (952)
T Consensus 185 -------------------------------------------------------------------------------- 184 (500)
T 2d5b_A 185 -------------------------------------------------------------------------------- 184 (500)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred hHHHHHHcCCceeeeecCCCCCCccccccccccceEEcccCcccccccCCCCHHHHHHHHHHHHHHcCCCcceecccCCc
Q 002217 413 DHEFALKFDISIHSVVMPDDESSSQSEKAYTGEGLIVNSSNLISGLDINGLSCQEATSKVIEWAEKTGNGKKKVNYKLRD 492 (952)
Q Consensus 413 D~~~~~~~~L~i~~vv~~~~~~~~~~~~~y~~~g~l~~~~~~~~~~~~~gl~~~~a~~~ii~~l~~~~~~~~~~~~~l~D 492 (952)
.....+..|+. .+++|
T Consensus 185 ------------------------------------------------------~~~~~~~~~l~----------~~l~D 200 (500)
T 2d5b_A 185 ------------------------------------------------------GYRNEVLAMLA----------EPIGD 200 (500)
T ss_dssp ------------------------------------------------------HHHHHHHHHHT----------SCCCC
T ss_pred ------------------------------------------------------HHHHHHHHHHh----------cCCCC
Confidence 00111222321 13789
Q ss_pred eeecc--cCC-CCcccCceEeCCCCceeecCCCCcCCCCCcccccCCCCCCCCCCccccccccccccCCCCCccccCCCc
Q 002217 493 WLFAR--QRY-WGEPIPVVFLDGTGETVPLHEAELPLTLPELDDFTPTGTGEPPLSKAVSWVQTTEHSSGKPARRETSTM 569 (952)
Q Consensus 493 W~ISR--QR~-WG~PIPv~~~~~~~~~~~~~~~~l~v~lp~~~~~~~~G~~~~~l~~~~~w~~~~~~~~g~~~~re~d~l 569 (952)
||||| ||+ ||+|||. + +.+|+
T Consensus 201 w~iSRp~~~~~WG~piP~--~------------------------------------------------------~~~v~ 224 (500)
T 2d5b_A 201 LSISRPKSRVPWGIPLPW--D------------------------------------------------------ENHVT 224 (500)
T ss_dssp EECEEETTTCCSSCEETT--E------------------------------------------------------EEEEE
T ss_pred eecccccccccCccccCC--C------------------------------------------------------CCCee
Confidence 99999 885 9999994 1 01378
Q ss_pred cccccccchh-heecCCCCchhHhhhhhhhcCCCceeEecCchhhHHHHHHHHHHHHHHHHhcCcCCCCcchhhhhhcee
Q 002217 570 PQWAGSCWYY-LRFMDPKNSKELVDKTKERYWSPVDVYVGGAEHAVLHLLYARFWHKVLYDIGVVSTKEPFKCVINQGII 648 (952)
Q Consensus 570 D~WfdSswy~-~~~~~p~~~~~~~~~~~~~~w~PvDlyv~G~D~~~~HLly~Rfw~~~L~~~~~~~~~~PFk~l~~~G~v 648 (952)
||||||.+.| ...++|.+.. . ..++|+|+|++|+||+.+|.+ +|.+.+..+| .+||+++++||||
T Consensus 225 ~vWfds~~~y~~~~g~~~~~~------~-~~~~p~di~~~G~D~~~fh~~---~~~a~~~~~g----~~~~~~v~~~G~v 290 (500)
T 2d5b_A 225 FVWFDALLNYVSALDYPEGEA------Y-RTFWPHAWHLIGKDILKPHAV---FWPTMLKAAG----IPMYRHLNVGGFL 290 (500)
T ss_dssp CHHHHHHTHHHHTTTTTTCHH------H-HHHGGGEEEEEEGGGHHHHHT---HHHHHHHHHT----CCCCSEEEEECCE
T ss_pred EEccccchhhHHHcCCCCCch------H-HHcCCCeEEEEeechhhhHHH---HHHHHHHHcC----CCCCcEEEECceE
Confidence 9999997444 3345664321 1 234599999999999987754 6766665554 4789999999999
Q ss_pred ccccceeEEecCCCccccCCCCCcccccccccCccccccccCCceeeccCcchhhcccccccccCCCCCCChhhHHhhhC
Q 002217 649 LGEMQYMVCKDVDGSYISADSTDTLGEYEQESIPEEKVMKSGDFFVMKDNPNIRLIARAHKMSKSRGNVVNPDDVVTEYG 728 (952)
Q Consensus 649 l~~~~y~~~~d~~g~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~vl~~~~~~~v~~~g~KMSKSkGNvV~P~eii~~YG 728 (952)
+++ +|+|||||+||+|+|.++|++||
T Consensus 291 ~~~------------------------------------------------------~G~KMSKS~GN~i~p~d~i~~~g 316 (500)
T 2d5b_A 291 LGP------------------------------------------------------DGRKMSKTLGNVVDPFALLEKYG 316 (500)
T ss_dssp ECT------------------------------------------------------TSSCCCTTTTCCCCHHHHHHHHC
T ss_pred EeC------------------------------------------------------CCCcccccCCCCCCHHHHHHhcC
Confidence 753 27999999999999999999999
Q ss_pred chhhhhhhhhcCCCCCCCCCChhhHHHHHH---------HHHHHHHHHhccCCCCCCCCCCccCCCCCChHHHHHHHHHH
Q 002217 729 ADSLRLYEMFMGPFRDSKTWNTSGIEGVHR---------FLGRMWRLIVGSSLPDGTFKGGTVVNDEEPTLEQLCTLHKC 799 (952)
Q Consensus 729 aDalRl~ll~~~~~~~~~~~s~~~i~~~~r---------~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~d~~~l~~l~~~ 799 (952)
||++|||+++.++++++.+|+++.+.+..+ ++.++..++... . .+.... ..+.+++++++++
T Consensus 317 ~DalR~~ll~~~~~~~d~~fs~~~~~~~~~~~l~~~l~n~~~r~~~~~~~~-~------~~~~~~--~~~~~l~~~l~~~ 387 (500)
T 2d5b_A 317 RDALRYYLLREIPYGQDTPVSEEALRTRYEADLADDLGNLVQRTRAMLFRF-A------EGRIPE--PVAGEELAEGTGL 387 (500)
T ss_dssp HHHHHHHHHHHSCTTSCEECCHHHHHHHHHHHCCCCCHHHHHHHHHHHHHH-S------TTBCCC--CCCCGGGGGGGGH
T ss_pred cHHHHHHHHhcCCcccCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-c------CCCCCc--hhHHHHHHHHHHH
Confidence 999999999878899999999999887542 223333322110 0 011111 1135677889999
Q ss_pred HHHHHHHHhcCChHHHHHHHHHHHHHHhcccc--------------------hhHHHHHHHHHHhCCcchhHHHHHHHHc
Q 002217 800 IAKVTEEIEGTRFNTGISAMMEFINAAYKWEK--------------------HPRKIIEPFILLLAPYAPHMSEELWFRL 859 (952)
Q Consensus 800 i~~v~~~~e~~~f~~ai~~l~~f~~~~~~~~~--------------------~~~~vL~~l~~LLaPf~P~iaEElw~~L 859 (952)
++++.++|++|+|+.|++.+++|++.++.+.. .+.++|+.+++||+|||||+|||||+.|
T Consensus 388 ~~~v~~a~~~~~~~~a~~~l~~l~~~~n~y~~~~k~w~~~~~~~~~~~~~~~~l~~~l~~~~~ll~P~~P~~aeei~~~l 467 (500)
T 2d5b_A 388 AGRLRPLVRELKFHVALEEAMAYVKALNRYINEKKPWELFKKEPEEARAVLYRVVEGLRIASILLTPAMPDKMAELRRAL 467 (500)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHTTTSHHHHHHHHHHT
T ss_pred HHHHHHHHHccCHHHHHHHHHHHHHHHHHHHHhcCchhhccCcHHHHHHHHHHHHHHHHHHHHHhhCcccHHHHHHHHHc
Confidence 99999999999999999999999987665321 1235677889999999999999999999
Q ss_pred CCC
Q 002217 860 GHS 862 (952)
Q Consensus 860 ~~~ 862 (952)
+.+
T Consensus 468 ~~~ 470 (500)
T 2d5b_A 468 GLK 470 (500)
T ss_dssp TCC
T ss_pred CCC
Confidence 865
No 12
>2csx_A Methionyl-tRNA synthetase; ligase, riken structural genomics/proteomics initiative, RSGI, structural genomics, ligase/RNA complex; 2.70A {Aquifex aeolicus} PDB: 2ct8_A*
Probab=100.00 E-value=5.3e-73 Score=669.82 Aligned_cols=432 Identities=26% Similarity=0.424 Sum_probs=323.2
Q ss_pred CCcEEEEcCCCCCCCCCCCCchhHHHHHHHHHHHHHHHcCCcccccccccccChHHHHHHHHhCCCchHHHHHHHHHHHH
Q 002217 93 KPKFYVLDMFPYPSGAGLHVGHPLGYTATDILARLKRMQGYNVLHPMGWDAFGLPAEQYAIETGTHPKITTLRNINRFRT 172 (952)
Q Consensus 93 k~kf~i~~~~Pypng~~lHiGH~~~~~~~Di~~Ry~r~~G~~V~~~~G~D~~Glpie~~a~~~g~~~~~~~~~~~~~~~~ 172 (952)
+++|||+.++|||||. |||||+++++++|+++||+||+||+|++++||||||+|||.+|++.|++++++++++++.|++
T Consensus 4 ~~~~~i~~p~py~ng~-lHiGH~~~~~~~D~~~R~~r~~G~~V~~~~g~D~~G~~i~~~a~~~g~~~~~~~~~~~~~~~~ 82 (497)
T 2csx_A 4 MKKFYVTTPIYYVNDV-PHLGHAYTTIAADTIARYYRLRDYDVFFLTGTDEHGLKIQKKAEELGISPKELVDRNAERFKK 82 (497)
T ss_dssp SCEEEEEEEEEETTSC-CCHHHHHHHHHHHHHHHHHHHTTCEEEEEEEEECCSHHHHTHHHHSSSCHHHHHHHHHHHHHH
T ss_pred CCcEEEecCCCCCCCc-cchhhHHHHHHHHHHHHHHHhcCCceeeecccCCCcHHHHHHHHHcCCCHHHHHHHHHHHHHH
Confidence 5789999999999998 999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHcCCccccCCcccCCChhHHHHHHHHHHHHHHCCceeeeccccccCCCCCcccCchhhcc-CccccCCCCeEEeecc
Q 002217 173 QLKSLGFSYDWNREISTIEPAYYKWTQWIFLQLLKRGLAYQAEVPVNWCPALGTVLANEEVVD-GVSERGGHPVIRKPMR 251 (952)
Q Consensus 173 ~l~~lgi~~Dw~~~~~T~~~~~~~~v~~~f~~L~~kGliy~~~~~v~wc~~~~t~ls~~Ev~~-~~~~~~~~~~~~~~~~ 251 (952)
++++||+++| .+++|+++.|.+.++++|.+|+++|+||++.++++||+.|+|++++.|+.+ |.|++||.+++.+...
T Consensus 83 ~~~~lgi~~d--~~~~t~~~~~~~~~~~~~~~L~~~G~iY~~~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~ 160 (497)
T 2csx_A 83 LWEFLKIEYT--KFIRTTDPYHVKFVQKVFEECYKRGDIYLGEYEGWYCVGCEEFKSEAELAEDHTCPIHQKKCEYIKEP 160 (497)
T ss_dssp HHHHTTCCCS--EEEETTSHHHHHHHHHHHHHHHHTTCEEEEEC---------------------------------CCE
T ss_pred HHHHhCCcCC--CCccCCCHHHHHHHHHHHHHHHHCCCEEecceeeccCcccCeEccHHHhccCCCCCCCCCCCeEEecC
Confidence 9999999766 688999999999999999999999999999999999999999999999988 8999999999999999
Q ss_pred ccchhhhhhhhHhhccCCCCCCchHHHHHHHhhhccCCCceEEEEEecCCCCccCcEEEEecCCcchhccccEEEECCCC
Q 002217 252 QWMLKITEYADRLLDDLDDLDWPESVKEMQRNWIGRSEGAEMDFRVLDSDGQERDIKITVYTTRPDTIFGATYLVVAPEH 331 (952)
Q Consensus 252 ~~~~~i~~y~~~l~~~l~~~~~p~~~~~~~~~~i~~s~~~~v~f~~~~~~~~~~~~~i~i~TT~P~Tl~g~~~v~v~p~~ 331 (952)
||||++++|++++++.+++. |+
T Consensus 161 ~wf~~l~~~~~~l~~~~~~~---------------------------------------------------------~~- 182 (497)
T 2csx_A 161 SYFFRLSKYQDKLLELYEKN---------------------------------------------------------PE- 182 (497)
T ss_dssp EEEECTTSSHHHHHHHHHHC---------------------------------------------------------TT-
T ss_pred ceEEEcHHHHHHHHHHHHhC---------------------------------------------------------CC-
Confidence 99999999998876543110 00
Q ss_pred ccchhhccccchHHHHHHHHHHhccchhhHhhhhhcccccccceEEecCCCCCcccEEecCcccCCCCCCceEecCCCCh
Q 002217 332 PLLSSLVSTTQSQNIEEYKNLASRKSDLERTELQKEKTGVFSGCYARNPASGEAIPIWVADYVLGSYGTGAIMAVPAHDT 411 (952)
Q Consensus 332 ~y~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~P~~~~~~pv~~~~~V~~~~GTG~V~~~Pah~~ 411 (952)
+| .|
T Consensus 183 -------------------------------------------------------------~~-----------~p---- 186 (497)
T 2csx_A 183 -------------------------------------------------------------FI-----------QP---- 186 (497)
T ss_dssp -------------------------------------------------------------SB-----------CS----
T ss_pred -------------------------------------------------------------ee-----------Cc----
Confidence 00 00
Q ss_pred hhHHHHHHcCCceeeeecCCCCCCccccccccccceEEcccCcccccccCCCCHHHHHHHHHHHHHHcCCCcceecccCC
Q 002217 412 RDHEFALKFDISIHSVVMPDDESSSQSEKAYTGEGLIVNSSNLISGLDINGLSCQEATSKVIEWAEKTGNGKKKVNYKLR 491 (952)
Q Consensus 412 ~D~~~~~~~~L~i~~vv~~~~~~~~~~~~~y~~~g~l~~~~~~~~~~~~~gl~~~~a~~~ii~~l~~~~~~~~~~~~~l~ 491 (952)
......+..|+.. .++
T Consensus 187 ------------------------------------------------------~~~~~~~~~~l~~----------~~~ 202 (497)
T 2csx_A 187 ------------------------------------------------------DYRRNEIISFVKQ----------GLK 202 (497)
T ss_dssp ------------------------------------------------------HHHHHHHHHHHHH----------CCC
T ss_pred ------------------------------------------------------HHHHHHHHHHHhc----------CCc
Confidence 0001112233321 378
Q ss_pred ceeecc--cCC-CCcccCceEeCCCCceeecCCCCcCCCCCcccccCCCCCCCCCCccccccccccccCCCCCccccCCC
Q 002217 492 DWLFAR--QRY-WGEPIPVVFLDGTGETVPLHEAELPLTLPELDDFTPTGTGEPPLSKAVSWVQTTEHSSGKPARRETST 568 (952)
Q Consensus 492 DW~ISR--QR~-WG~PIPv~~~~~~~~~~~~~~~~l~v~lp~~~~~~~~G~~~~~l~~~~~w~~~~~~~~g~~~~re~d~ 568 (952)
|||||| ||+ ||+|||+ + . .++
T Consensus 203 Dw~isR~~~~~~WG~~iP~--~--~----------------------------------------------------~~~ 226 (497)
T 2csx_A 203 DLSVTRPRSRVKWGIPVPF--D--P----------------------------------------------------EHT 226 (497)
T ss_dssp CEECEEETTTCCSSEEETT--E--E----------------------------------------------------EEE
T ss_pred cccccccCCCCCCceecCC--C--C----------------------------------------------------Cce
Confidence 999999 885 9999995 1 0 136
Q ss_pred ccccccccchhheecCCCCchhHhhhhhhhcCCCceeEecCchhhHHHHHHHHHHHHHHHHhcCcCCCCcchhhhhhcee
Q 002217 569 MPQWAGSCWYYLRFMDPKNSKELVDKTKERYWSPVDVYVGGAEHAVLHLLYARFWHKVLYDIGVVSTKEPFKCVINQGII 648 (952)
Q Consensus 569 lD~WfdSswy~~~~~~p~~~~~~~~~~~~~~w~PvDlyv~G~D~~~~HLly~Rfw~~~L~~~~~~~~~~PFk~l~~~G~v 648 (952)
+++||||.+.|..-+ +.+ . .++| |+|++++|+||+.+|.. +|.+.+..+| .+||+++++||||
T Consensus 227 i~vW~ds~~~~~s~~-~~~-------~-~~~~-p~di~~~G~D~~~~H~~---~~~a~l~~~g----~~~~~~~~~~G~v 289 (497)
T 2csx_A 227 IYVWFDALFNYISAL-EDK-------V-EIYW-PADLHLVGKDILRFHTV---YWPAFLMSLG----YELPKKVFAHGWW 289 (497)
T ss_dssp ECSHHHHHTHHHHTT-TTT-------H-HHHC-SCSCEEEEGGGHHHHHT---HHHHHHHHHT----CCCCSCEEEECCE
T ss_pred EEEecccchhhcccC-CCc-------c-hhhC-CceEEEeecchhHhHHH---HHHHHHHHcC----CCCCcEEEECcEE
Confidence 789999986655322 110 1 1455 99999999999988854 6766666554 4799999999998
Q ss_pred ccccceeEEecCCCccccCCCCCcccccccccCccccccccCCceeeccCcchhhcccccccccCCCCCCChhhHHhhhC
Q 002217 649 LGEMQYMVCKDVDGSYISADSTDTLGEYEQESIPEEKVMKSGDFFVMKDNPNIRLIARAHKMSKSRGNVVNPDDVVTEYG 728 (952)
Q Consensus 649 l~~~~y~~~~d~~g~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~vl~~~~~~~v~~~g~KMSKSkGNvV~P~eii~~YG 728 (952)
+.+ |+|||||+||+|+|.+++++||
T Consensus 290 ~~~-------------------------------------------------------G~KMSKS~GN~i~~~dli~~~g 314 (497)
T 2csx_A 290 TVE-------------------------------------------------------GKKMSKTLGNVVDPYEVVQEYG 314 (497)
T ss_dssp ESS-------------------------------------------------------SSBCCTTTTCCCCHHHHHHHHC
T ss_pred EeC-------------------------------------------------------CceeCCcCCCCCCHHHHHHHCC
Confidence 742 7999999999999999999999
Q ss_pred chhhhhhhhhcCCCCCCCCCChhhHHHHHH---------HHHHHHHHHhccCCCCCCCCCCccCCCCCChHHHHHHHHHH
Q 002217 729 ADSLRLYEMFMGPFRDSKTWNTSGIEGVHR---------FLGRMWRLIVGSSLPDGTFKGGTVVNDEEPTLEQLCTLHKC 799 (952)
Q Consensus 729 aDalRl~ll~~~~~~~~~~~s~~~i~~~~r---------~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~d~~~l~~l~~~ 799 (952)
+|++|||+++.++++++.+|+++.+.+..+ ++.|++.++.... .+... ...|.+++++++++
T Consensus 315 ~DalR~~ll~~~~~~~d~~fs~~~l~~~~~~~l~~~l~n~~~R~~~~~~~~~-------~~~~~--~~~d~~l~~~l~~~ 385 (497)
T 2csx_A 315 LDEVRYFLLREVPFGQDGDFSKKAILNRINGELANEIGNLYSRVVNMAHKFL-------GGEVS--GARDEEYAKIAQES 385 (497)
T ss_dssp HHHHHHHHHHSSCTTSCEECCHHHHHHHHHHTCCCCCHHHHHHHHHHHHHHS-------TTCBC--CCCCTTHHHHHHHH
T ss_pred cHHHHHHHHhcCCcccCCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc-------CCCCC--chhHHHHHHHHHHH
Confidence 999999999878999999999999887643 3556655542210 01111 33577889999999
Q ss_pred HHHHHHHHhcCChHHHHHHHHHHHHHHhcccc---------------------hhHHHHHHHHHHhCCcchhHHHHHHHH
Q 002217 800 IAKVTEEIEGTRFNTGISAMMEFINAAYKWEK---------------------HPRKIIEPFILLLAPYAPHMSEELWFR 858 (952)
Q Consensus 800 i~~v~~~~e~~~f~~ai~~l~~f~~~~~~~~~---------------------~~~~vL~~l~~LLaPf~P~iaEElw~~ 858 (952)
++++.++|++|+|+.|++.+++|++..+.+.. .+.++|+.+++||+|||||+|||||+.
T Consensus 386 ~~~v~~~~~~~~~~~a~~~l~~l~~~~n~y~~~~k~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ll~P~~P~~aeei~~~ 465 (497)
T 2csx_A 386 IKNYENYMEKVNFYKAIEEILKFTSYLNKYVDEKQPWALNKERKKEELQKVLYALVDGLFVLTHLLYPITPNKMKEALQM 465 (497)
T ss_dssp HHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHHHHCHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHHTTTSHHHHHHHHHH
T ss_pred HHHHHHHHHccCHHHHHHHHHHHHHHHHHHHHhcCchhhcccccHHHHHHHHHHHHHHHHHHHHHhcCccCHHHHHHHHH
Confidence 99999999999999999999999987655311 123578888999999999999999999
Q ss_pred cCCC
Q 002217 859 LGHS 862 (952)
Q Consensus 859 L~~~ 862 (952)
|+.+
T Consensus 466 L~~~ 469 (497)
T 2csx_A 466 LGEK 469 (497)
T ss_dssp TTCS
T ss_pred cCCC
Confidence 9864
No 13
>4dlp_A Aminoacyl-tRNA synthetase, class I:aminoacyl-tRNA synthetase, class IA:methionyl-tRNA...; structural genomics; 2.65A {Brucella melitensis biovar abortus 230ORGANISM_TAXID}
Probab=100.00 E-value=1.1e-71 Score=663.56 Aligned_cols=440 Identities=23% Similarity=0.384 Sum_probs=346.7
Q ss_pred CCCCcEEEEcCCCCCCCCCCCCchhHHHHHHHHHHHHHHHcCCcccccccccccChHHHHHHHHhCCCchHHHHHHHHHH
Q 002217 91 TSKPKFYVLDMFPYPSGAGLHVGHPLGYTATDILARLKRMQGYNVLHPMGWDAFGLPAEQYAIETGTHPKITTLRNINRF 170 (952)
Q Consensus 91 ~~k~kf~i~~~~Pypng~~lHiGH~~~~~~~Di~~Ry~r~~G~~V~~~~G~D~~Glpie~~a~~~g~~~~~~~~~~~~~~ 170 (952)
.++++|||+.++|||||+ |||||+++++++|+++||+|++||+|.+++|+|+||+||+.+|.+.|.+|+++++++.+.|
T Consensus 22 ~~~~~~~i~~p~pypng~-lHiGH~r~~v~~D~laR~lr~~G~~V~~~~g~dd~g~ki~~~a~~~g~~~~~~~~~~~~~~ 100 (536)
T 4dlp_A 22 MSREKYYITTAIAYPNGK-PHIGHAYELIATDAMARFQRLNGMDVYFLTGTDEHGIKMLQSARKEGITPRDLADRNTSAF 100 (536)
T ss_dssp --CCEEEEEECCBCCSSC-CCHHHHHHHHHHHHHHHHHHHTTCEEEEEEEECCCSHHHHHHHHHHTSCHHHHHHHHHHHH
T ss_pred CCCCCEEEeCCCCCCCCC-cCcchhHHHHHHHHHHHHHHhcCCcEEEecCcCCcchHHHHHHHHcCCCHHHHHHHHHHHH
Confidence 356789999999999998 9999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHcCCccccCCcccCCChhHHHHHHHHHHHHHHCCceeeeccccccCCCCCcccCchhhccC----ccccCCCCeE
Q 002217 171 RTQLKSLGFSYDWNREISTIEPAYYKWTQWIFLQLLKRGLAYQAEVPVNWCPALGTVLANEEVVDG----VSERGGHPVI 246 (952)
Q Consensus 171 ~~~l~~lgi~~Dw~~~~~T~~~~~~~~v~~~f~~L~~kGliy~~~~~v~wc~~~~t~ls~~Ev~~~----~~~~~~~~~~ 246 (952)
++++++|||++| .+++|+++.|.+.++++|.+|+++|+||++..+++||+.|++.+++.|++++ .|.+||.+++
T Consensus 101 ~~~l~~lgi~~d--~~~~t~~~~~~~~v~~~~~~L~~~G~iY~~~~~~~~~~~~~~~l~~~~~~~~~~g~~c~~~g~~~e 178 (536)
T 4dlp_A 101 RRMAEVLNSSND--DYIRTSEERHYKASQAIWQAMVANGDIYKGGYAGWYSVRDEAYYGEEETEVRADGVRYGPQGTPVE 178 (536)
T ss_dssp HHHHHHTTCCCS--EEEETTSHHHHHHHHHHHHHHHHTTCEEEEEEEEEEETTTTEEECGGGCEECTTSCEECTTSSBCE
T ss_pred HHHHHHcCCCCC--cceeCCCHHHHHHHHHHHHHHHHCCCEEEeceeeeecCCcCcccCHHHhhcCCCCCcccCCCCcce
Confidence 999999999888 8899999999999999999999999999999999999999999999999753 5889999999
Q ss_pred EeeccccchhhhhhhhHhhccCCCC-C--CchHHHHHHHhhhccCCCceEEEEEecCCCCccCcEEEEecCCcchhcccc
Q 002217 247 RKPMRQWMLKITEYADRLLDDLDDL-D--WPESVKEMQRNWIGRSEGAEMDFRVLDSDGQERDIKITVYTTRPDTIFGAT 323 (952)
Q Consensus 247 ~~~~~~~~~~i~~y~~~l~~~l~~~-~--~p~~~~~~~~~~i~~s~~~~v~f~~~~~~~~~~~~~i~i~TT~P~Tl~g~~ 323 (952)
.+..+||||++++|++.|++++++. . +|+.
T Consensus 179 ~~~~~~~f~~l~~~~~~l~~~~~~~~~~i~P~~----------------------------------------------- 211 (536)
T 4dlp_A 179 WVEEESYFFRLSAYQDKLLDLYENNPGFIMPAE----------------------------------------------- 211 (536)
T ss_dssp EEEEEEEEECGGGGHHHHHHHHHHCTTSEESHH-----------------------------------------------
T ss_pred EEeccceEEecHHHHHHHHHHHHhCCCccCcHH-----------------------------------------------
Confidence 9999999999999998876643210 0 0000
Q ss_pred EEEECCCCccchhhccccchHHHHHHHHHHhccchhhHhhhhhcccccccceEEecCCCCCcccEEecCcccCCCCCCce
Q 002217 324 YLVVAPEHPLLSSLVSTTQSQNIEEYKNLASRKSDLERTELQKEKTGVFSGCYARNPASGEAIPIWVADYVLGSYGTGAI 403 (952)
Q Consensus 324 ~v~v~p~~~y~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~P~~~~~~pv~~~~~V~~~~GTG~V 403 (952)
T Consensus 212 -------------------------------------------------------------------------------- 211 (536)
T 4dlp_A 212 -------------------------------------------------------------------------------- 211 (536)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred EecCCCChhhHHHHHHcCCceeeeecCCCCCCccccccccccceEEcccCcccccccCCCCHHHHHHHHHHHHHHcCCCc
Q 002217 404 MAVPAHDTRDHEFALKFDISIHSVVMPDDESSSQSEKAYTGEGLIVNSSNLISGLDINGLSCQEATSKVIEWAEKTGNGK 483 (952)
Q Consensus 404 ~~~Pah~~~D~~~~~~~~L~i~~vv~~~~~~~~~~~~~y~~~g~l~~~~~~~~~~~~~gl~~~~a~~~ii~~l~~~~~~~ 483 (952)
....+.+|+.+
T Consensus 212 ----------------------------------------------------------------~~~~~~~~l~~----- 222 (536)
T 4dlp_A 212 ----------------------------------------------------------------RRNEIVSFVKS----- 222 (536)
T ss_dssp ----------------------------------------------------------------HHHHHHHHHHT-----
T ss_pred ----------------------------------------------------------------HHHHHHHHHhc-----
Confidence 11223344432
Q ss_pred ceecccCCceeecccCC-CCcccCceEeCCCCceeecCCCCcCCCCCcccccCCCCCCCCCCccccccccccccCCCCCc
Q 002217 484 KKVNYKLRDWLFARQRY-WGEPIPVVFLDGTGETVPLHEAELPLTLPELDDFTPTGTGEPPLSKAVSWVQTTEHSSGKPA 562 (952)
Q Consensus 484 ~~~~~~l~DW~ISRQR~-WG~PIPv~~~~~~~~~~~~~~~~l~v~lp~~~~~~~~G~~~~~l~~~~~w~~~~~~~~g~~~ 562 (952)
.++||||||||. ||+|||. +
T Consensus 223 -----~l~D~~ISR~~~~WGipiP~----~-------------------------------------------------- 243 (536)
T 4dlp_A 223 -----GLKDLSISRTTFDWGIPVPG----D-------------------------------------------------- 243 (536)
T ss_dssp -----CCCCEECEEC--CCSCBCTT----C--------------------------------------------------
T ss_pred -----CCCccCCccCCCcCCeeCCC----C--------------------------------------------------
Confidence 378999999985 9999993 1
Q ss_pred cccCCCcccccccc-chhheecCCCCchhHhhhhhhhcCCCceeEecCchhhHHHHHHHHHHHHHHHHhcCcCCCCcchh
Q 002217 563 RRETSTMPQWAGSC-WYYLRFMDPKNSKELVDKTKERYWSPVDVYVGGAEHAVLHLLYARFWHKVLYDIGVVSTKEPFKC 641 (952)
Q Consensus 563 ~re~d~lD~WfdSs-wy~~~~~~p~~~~~~~~~~~~~~w~PvDlyv~G~D~~~~HLly~Rfw~~~L~~~~~~~~~~PFk~ 641 (952)
+.+|+||||||. +|+....+|..... .+.|+|+|+++.|+||+.+|. -||...|...| ..||++
T Consensus 244 --~~~v~yvWfda~~~y~s~~~~~~~~~~------~~~~~p~dv~~~G~D~~~fh~---~~~~a~l~a~g----~~~~~~ 308 (536)
T 4dlp_A 244 --EKHVMYVWVDALTNYITALGYPDTTDE------RWAYWPANAHIIGKDISRFHA---VYWPAFLMSAQ----LPLPKR 308 (536)
T ss_dssp --TTSEECHHHHHHHHHHHTTTTTCTTSG------GGGGCSCSEEEEEGGGHHHHH---THHHHHHHHTT----CCCCSC
T ss_pred --CCCceEEeeCCcHHHHHhcCCCCCchH------HHhhCCcceEEeechHHHHHH---HHHHHHHHHCC----CCCCcE
Confidence 124899999997 55555566754322 245679999999999997774 45777776655 468899
Q ss_pred hhhhceeccccceeEEecCCCccccCCCCCcccccccccCccccccccCCceeeccCcchhhcccccccccCCCCCCChh
Q 002217 642 VINQGIILGEMQYMVCKDVDGSYISADSTDTLGEYEQESIPEEKVMKSGDFFVMKDNPNIRLIARAHKMSKSRGNVVNPD 721 (952)
Q Consensus 642 l~~~G~vl~~~~y~~~~d~~g~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~vl~~~~~~~v~~~g~KMSKSkGNvV~P~ 721 (952)
|++||||+. +|+|||||+||+|+|.
T Consensus 309 v~~hg~v~~-------------------------------------------------------~G~KMSKS~GNvi~p~ 333 (536)
T 4dlp_A 309 VFAHGFLFN-------------------------------------------------------RGEKMSKSVGNVIDPF 333 (536)
T ss_dssp EEEECCEEC-------------------------------------------------------------------CCHH
T ss_pred EEeeeeEee-------------------------------------------------------CCceecccCCCCCCHH
Confidence 999999863 2899999999999999
Q ss_pred hHHhhhCchhhhhhhhhcCCCCCCCCCChhhHHHHH---------HHHHHHHHHHhccCCCCCCCCCCccCCCCCChHHH
Q 002217 722 DVVTEYGADSLRLYEMFMGPFRDSKTWNTSGIEGVH---------RFLGRMWRLIVGSSLPDGTFKGGTVVNDEEPTLEQ 792 (952)
Q Consensus 722 eii~~YGaDalRl~ll~~~~~~~~~~~s~~~i~~~~---------r~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~d~~~ 792 (952)
+++++||+|++|||+++..+.+++.+|+.+.+.+.. ++++|+.+++..+. . ...+. .......|+++
T Consensus 334 d~i~~~GaDalR~~ll~~~~~~~d~~fs~~~~~~~~n~~l~~~l~N~~~R~~~~~~~~~-~--~~~p~-~~~~~~~d~~l 409 (536)
T 4dlp_A 334 ELVERYGLDQLRYFLMREVPFGQDGSYSHEAIVNRTNADLANDLGNLAQRSLSMIAKNC-E--GKVPQ-PGAFSEADKAI 409 (536)
T ss_dssp HHHHHHCHHHHHHHHHHHSCTTSCEECCHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHS-T--TBCCC-CCCCCHHHHHH
T ss_pred HHHHHcCcHHHHHHHHhcCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc-C--CCCCC-cccCCHHHHHH
Confidence 999999999999999987888999999998887643 23444444443221 1 11110 01123458899
Q ss_pred HHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHhcccc--------------------hhHHHHHHHHHHhCCcchhHH
Q 002217 793 LCTLHKCIAKVTEEIEGTRFNTGISAMMEFINAAYKWEK--------------------HPRKIIEPFILLLAPYAPHMS 852 (952)
Q Consensus 793 l~~l~~~i~~v~~~~e~~~f~~ai~~l~~f~~~~~~~~~--------------------~~~~vL~~l~~LLaPf~P~ia 852 (952)
+++++++++.+.++|++|+|+.|++.+++|++..+.+.. .+.++|+.+++||+|||||+|
T Consensus 410 l~~l~~~~~~v~~a~~~~~~~~a~~~l~~l~~~~n~Y~~~~k~w~l~~~~~~~~~~~~~~l~~~l~~~~~lL~P~~P~~a 489 (536)
T 4dlp_A 410 LDQADAALETARKAMDDQALHLALGAIFAVVAEANRYFAGQEPWALRKTDPARMGTVLYVTAEVLRRVGIMVQPFIPQSA 489 (536)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHTTTSHHHH
T ss_pred HHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHHHHhCCchhhcCCCHHHHHHHHHHHHHHHHHHHHHhcCcccHHH
Confidence 999999999999999999999999999999976654321 112578888999999999999
Q ss_pred HHHHHHcCCC
Q 002217 853 EELWFRLGHS 862 (952)
Q Consensus 853 EElw~~L~~~ 862 (952)
||||+.|+..
T Consensus 490 eei~~~L~~~ 499 (536)
T 4dlp_A 490 EKLLDILAVP 499 (536)
T ss_dssp HHHHHTTTCC
T ss_pred HHHHHHcCCC
Confidence 9999999864
No 14
>3kfl_A Methionyl-tRNA synthetase; parasite, aminoacyl-tRNA synthetase, tRNA ligase metrs, methionine, translation, ATP-binding; HET: ME8; 2.00A {Leishmania major}
Probab=100.00 E-value=2.7e-72 Score=670.59 Aligned_cols=457 Identities=20% Similarity=0.299 Sum_probs=359.0
Q ss_pred CCCCCCCCCCCCCCcEEEEcCCCCCCCCCCCCchhHHHHHHHHHHHHHHHcCCcccccccccccChHHHHHHHHhCCCch
Q 002217 81 RTFRTPDEIDTSKPKFYVLDMFPYPSGAGLHVGHPLGYTATDILARLKRMQGYNVLHPMGWDAFGLPAEQYAIETGTHPK 160 (952)
Q Consensus 81 ~~f~~~~~~~~~k~kf~i~~~~Pypng~~lHiGH~~~~~~~Di~~Ry~r~~G~~V~~~~G~D~~Glpie~~a~~~g~~~~ 160 (952)
.+|.+.. ..++++|||+.++|||||+ |||||+++++++|+++||+||+||+|.+++|+|+||+||+.+|.+.|.+|+
T Consensus 15 ~~~~~~~--~~~~~~~~i~~~~py~ng~-lHiGH~r~~v~~D~laR~~r~~G~~V~~~~g~dd~G~ki~~~a~~~g~~p~ 91 (564)
T 3kfl_A 15 QTQGPGS--MKKQKVFFATTPIYYVNAS-PHIGHVYSTLIVDVLGRYHRVKGEEVFVMTGTDEHGQKVAEAAAKQGVSPM 91 (564)
T ss_dssp -----------CCCCEEEEEEEEECSSC-CCHHHHHHHHHHHHHHHHHHHHTCCEEEEEEEECCSHHHHHHHHHTTCCHH
T ss_pred hhcCCcc--ccCCCCEEEeCCCCCCCCC-CCcchhHHHHHHHHHHHHHHHcCCcEEEecCcCCCCcHHHHHHHHcCCCHH
Confidence 3555442 3457889999999999998 999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHcCCccccCCcccCCChhHHHHHHHHHHHHHHCCceeeeccccccCCCCCcccCchhhccC----
Q 002217 161 ITTLRNINRFRTQLKSLGFSYDWNREISTIEPAYYKWTQWIFLQLLKRGLAYQAEVPVNWCPALGTVLANEEVVDG---- 236 (952)
Q Consensus 161 ~~~~~~~~~~~~~l~~lgi~~Dw~~~~~T~~~~~~~~v~~~f~~L~~kGliy~~~~~v~wc~~~~t~ls~~Ev~~~---- 236 (952)
++++++.+.|++++++|||++| .+++|+++.|.+.++++|.+|+++|+||++...++||+.|+++|++.|+.++
T Consensus 92 ~~~~~~~~~~~~~~~~lgi~~D--~~~~t~~~~~~~~v~~~~~~L~~~G~iy~~~~~~~y~~~~~~~l~~~~~~~~~~~~ 169 (564)
T 3kfl_A 92 DFTTSVSSEFKQCFQEMNYDMN--YFIRTTNPTHEKLVQDIWKKLAAKGDIYLGKYEGWYSVSDESFLTAQNVADGVDRD 169 (564)
T ss_dssp HHHHHHHHHHHHHHHHTTCCCS--EEEETTSHHHHHHHHHHHHHHHHHTCEEEEEEEEEEETTTTEEECGGGEEEEECTT
T ss_pred HHHHHHHHHHHHHHHHcCCCCC--ccccCCCHHHHHHHHHHHHHHHHCCCEEEeeeeEEecCCcCCCCCHHHhccCcCCC
Confidence 9999999999999999999998 6899999999999999999999999999999999999999999999999754
Q ss_pred --cc---ccCCCCeEEeeccccchhhhhhhhHhhccCCCC-C--CchHHHHHHHhhhccCCCceEEEEEecCCCCccCcE
Q 002217 237 --VS---ERGGHPVIRKPMRQWMLKITEYADRLLDDLDDL-D--WPESVKEMQRNWIGRSEGAEMDFRVLDSDGQERDIK 308 (952)
Q Consensus 237 --~~---~~~~~~~~~~~~~~~~~~i~~y~~~l~~~l~~~-~--~p~~~~~~~~~~i~~s~~~~v~f~~~~~~~~~~~~~ 308 (952)
.| .+||.+++.+.++||||++++|++.|++++++. . +|+
T Consensus 170 g~~c~~~~~~g~~~~~~~~~~~f~~l~~~~~~l~~~~~~~~~~i~P~--------------------------------- 216 (564)
T 3kfl_A 170 GKPCKVSLESGHVVTWVEEENYMFRLSAFRERLLKYFHDHPNCIVPE--------------------------------- 216 (564)
T ss_dssp SCEEEEETTTSCBCEEEEEEEEEECGGGGHHHHHHHHHHCTTSEESH---------------------------------
T ss_pred CCEeccccCCCCccEEEecceeEEEHHHHHHHHHHHHHhCCCccCCH---------------------------------
Confidence 23 257899999999999999999999887653210 0 010
Q ss_pred EEEecCCcchhccccEEEECCCCccchhhccccchHHHHHHHHHHhccchhhHhhhhhcccccccceEEecCCCCCcccE
Q 002217 309 ITVYTTRPDTIFGATYLVVAPEHPLLSSLVSTTQSQNIEEYKNLASRKSDLERTELQKEKTGVFSGCYARNPASGEAIPI 388 (952)
Q Consensus 309 i~i~TT~P~Tl~g~~~v~v~p~~~y~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~P~~~~~~pv 388 (952)
T Consensus 217 -------------------------------------------------------------------------------- 216 (564)
T 3kfl_A 217 -------------------------------------------------------------------------------- 216 (564)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred EecCcccCCCCCCceEecCCCChhhHHHHHHcCCceeeeecCCCCCCccccccccccceEEcccCcccccccCCCCHHHH
Q 002217 389 WVADYVLGSYGTGAIMAVPAHDTRDHEFALKFDISIHSVVMPDDESSSQSEKAYTGEGLIVNSSNLISGLDINGLSCQEA 468 (952)
Q Consensus 389 ~~~~~V~~~~GTG~V~~~Pah~~~D~~~~~~~~L~i~~vv~~~~~~~~~~~~~y~~~g~l~~~~~~~~~~~~~gl~~~~a 468 (952)
..
T Consensus 217 ------------------------------------------------------------------------------~~ 218 (564)
T 3kfl_A 217 ------------------------------------------------------------------------------FR 218 (564)
T ss_dssp ------------------------------------------------------------------------------HH
T ss_pred ------------------------------------------------------------------------------HH
Confidence 01
Q ss_pred HHHHHHHHHHcCCCcceecccCCceeecc----cCCCCcccCceEeCCCCceeecCCCCcCCCCCcccccCCCCCCCCCC
Q 002217 469 TSKVIEWAEKTGNGKKKVNYKLRDWLFAR----QRYWGEPIPVVFLDGTGETVPLHEAELPLTLPELDDFTPTGTGEPPL 544 (952)
Q Consensus 469 ~~~ii~~l~~~~~~~~~~~~~l~DW~ISR----QR~WG~PIPv~~~~~~~~~~~~~~~~l~v~lp~~~~~~~~G~~~~~l 544 (952)
+..+.+|+.+ .++|||||| |++||+|||. +
T Consensus 219 ~~~~~~wl~~----------gl~D~~ISR~~~~~~~WGipiP~----~-------------------------------- 252 (564)
T 3kfl_A 219 RREVIKTVEK----------GLFDLSISRKRESVMNWSIPVPG----D-------------------------------- 252 (564)
T ss_dssp HHHHHHHHHH----------CCCCEECEEEGGGGTTCSCEETT----E--------------------------------
T ss_pred HHHHHHHHhC----------CCCCccccCcCCCCCCCCeecCC----C--------------------------------
Confidence 2334455543 378999999 8899999993 1
Q ss_pred ccccccccccccCCCCCccccCCCcccccccc-chhheecC-CCCchhH-hhhhh-hhcCCCceeEecCchhhHHHHHHH
Q 002217 545 SKAVSWVQTTEHSSGKPARRETSTMPQWAGSC-WYYLRFMD-PKNSKEL-VDKTK-ERYWSPVDVYVGGAEHAVLHLLYA 620 (952)
Q Consensus 545 ~~~~~w~~~~~~~~g~~~~re~d~lD~WfdSs-wy~~~~~~-p~~~~~~-~~~~~-~~~w~PvDlyv~G~D~~~~HLly~ 620 (952)
+.+|+||||||. +|+....+ |..+... ...+. .+.|||+|+++.|+||+.+|.
T Consensus 253 --------------------~~~v~yVWfDa~~~y~s~~~~~~~~~~~~~~~~~~~~~~~wp~dv~~~GkDii~FH~--- 309 (564)
T 3kfl_A 253 --------------------ERHCIYVWLDALFNYYTGALTRVATDGTETLDEDHHALNRWPADVHVVGKDILKFHA--- 309 (564)
T ss_dssp --------------------EEEEECHHHHHHTHHHHHHHEEECTTSCEEECSSSTTTTCCSCSEEEEEGGGHHHHH---
T ss_pred --------------------CCCEEEEeccCcHHHHHHhCccccccccccchhcchhhhcCccceEEEeecccchHH---
Confidence 124899999997 44443333 4332110 00001 033569999999999998884
Q ss_pred HHHHHHHHHhcCcCCCCcchhhhhhceeccccceeEEecCCCccccCCCCCcccccccccCccccccccCCceeeccCcc
Q 002217 621 RFWHKVLYDIGVVSTKEPFKCVINQGIILGEMQYMVCKDVDGSYISADSTDTLGEYEQESIPEEKVMKSGDFFVMKDNPN 700 (952)
Q Consensus 621 Rfw~~~L~~~~~~~~~~PFk~l~~~G~vl~~~~y~~~~d~~g~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~vl~~~~~ 700 (952)
-+|...|..+| .+|+++|++||||..
T Consensus 310 ~~wpa~L~a~g----~~~~~~v~~hg~v~~-------------------------------------------------- 335 (564)
T 3kfl_A 310 IYWPAFLMSAE----LPLPERLVSHGWWTK-------------------------------------------------- 335 (564)
T ss_dssp THHHHHHHHTT----CCCCSCEEEECCEEE--------------------------------------------------
T ss_pred HHHHHHHHhCC----CCCCcEEEEcccEee--------------------------------------------------
Confidence 46888887776 378899999999842
Q ss_pred hhhcccccccccCCCCCCChhhHHhhhCchhhhhhhhhcCCCCCCCCCChhhHHHHHH--HHHHHHHHH---hccCCCCC
Q 002217 701 IRLIARAHKMSKSRGNVVNPDDVVTEYGADSLRLYEMFMGPFRDSKTWNTSGIEGVHR--FLGRMWRLI---VGSSLPDG 775 (952)
Q Consensus 701 ~~v~~~g~KMSKSkGNvV~P~eii~~YGaDalRl~ll~~~~~~~~~~~s~~~i~~~~r--~l~~l~~~~---~~~~~~~~ 775 (952)
+|+|||||+||+|+|.+++++||+|++|||+++..+.+++.+|+++.+.+..+ ++++++|++ +.......
T Consensus 336 -----~G~KMSKS~GNvV~p~d~i~~~G~DalR~~ll~~~~~~~D~~fs~~~~~~~~n~~l~~~l~N~~~R~~~~~~~~~ 410 (564)
T 3kfl_A 336 -----DHKKISKSLGNAFDPVEKAKEFGIDALKYFLMRESNFQDDGDYSDKNMVARLNGELADTLGNLVSRCVAPKINVN 410 (564)
T ss_dssp -----TTEECCTTTTCCCCHHHHHHHHCHHHHHHHHHHHCCSSCCEECCHHHHHHHHHHTTTTTHHHHHHHHHCTTTSTT
T ss_pred -----CCccccccCCCCCCHHHHHHHcCcHHHHHHHHHcCCcccCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 38999999999999999999999999999999878899999999998887543 444444433 22211000
Q ss_pred CCCCCccCCCCCChHHHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHhcccc--------------------hhHH
Q 002217 776 TFKGGTVVNDEEPTLEQLCTLHKCIAKVTEEIEGTRFNTGISAMMEFINAAYKWEK--------------------HPRK 835 (952)
Q Consensus 776 ~~~~~~~~~~~~~d~~~l~~l~~~i~~v~~~~e~~~f~~ai~~l~~f~~~~~~~~~--------------------~~~~ 835 (952)
+..+. .......|.+++++++++++++.++|++|+|++|++.+++|++..+++.. .+.+
T Consensus 411 g~~p~-~~~~~~~d~~ll~~l~~~~~~v~~a~e~~~~~~a~~~i~~l~~~~n~Y~~~~kpW~l~~~~~~~~~~~~~~l~~ 489 (564)
T 3kfl_A 411 GMWPE-PAEYSESDKTLIASLNNLAGTVDHYYCLPDIQHALIAIFDVLRSLNAYVTENAPWKLVKMDTARLGTVLYVTME 489 (564)
T ss_dssp SBCCC-CCCCCHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHCHHHHTTTCHHHHHHHHHHHHH
T ss_pred CcCCC-CCCCCHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHhcCChhhhcCCHHHHHHHHHHHHH
Confidence 11110 01123457889999999999999999999999999999999987665321 1236
Q ss_pred HHHHHHHHhCCcchhHHHHHHHHcCCC
Q 002217 836 IIEPFILLLAPYAPHMSEELWFRLGHS 862 (952)
Q Consensus 836 vL~~l~~LLaPf~P~iaEElw~~L~~~ 862 (952)
+|+.+++||+|||||+|||||+.|+..
T Consensus 490 ~l~~l~~lL~P~~P~~ae~i~~~Lg~~ 516 (564)
T 3kfl_A 490 GLRICTMFLQPVMPQKAKEIMDALGVP 516 (564)
T ss_dssp HHHHHHHHHTTTSHHHHHHHHHHHTCC
T ss_pred HHHHHHHHHHhHhhHHHHHHHHHcCCC
Confidence 788899999999999999999999864
No 15
>3h99_A Methionyl-tRNA synthetase; rossmann fold, aminoacyl-tRNA synthetase, ATP-binding, ligas binding, nucleotide-binding, protein biosynthesis; HET: CIT; 1.40A {Escherichia coli} PDB: 3h97_A* 3h9b_A* 1f4l_A 3h9c_A* 1pfv_A* 1pfu_A 1p7p_A* 1pfw_A* 1pfy_A* 1pg0_A* 1pg2_A* 1qqt_A 1mea_A 1med_A
Probab=100.00 E-value=4.5e-71 Score=661.47 Aligned_cols=455 Identities=20% Similarity=0.266 Sum_probs=358.1
Q ss_pred CCCCCcEEEEcCCCCCCCCCCCCchhHHHHHHHHHHHHHHHcCCcccccccccccChHHHHHHHHhCCCchHHHHHHHHH
Q 002217 90 DTSKPKFYVLDMFPYPSGAGLHVGHPLGYTATDILARLKRMQGYNVLHPMGWDAFGLPAEQYAIETGTHPKITTLRNINR 169 (952)
Q Consensus 90 ~~~k~kf~i~~~~Pypng~~lHiGH~~~~~~~Di~~Ry~r~~G~~V~~~~G~D~~Glpie~~a~~~g~~~~~~~~~~~~~ 169 (952)
+.++++|||+++||||||. |||||+++++++|+++||+||+||+|.+++|||+||+||+.+|.+.|++++++++++.+.
T Consensus 14 ~~~~~~~~v~~~~py~ng~-lHiGH~r~~v~~D~laR~~r~~G~~V~~~~g~D~~G~~i~~~a~~~g~~~~~~~~~~~~~ 92 (560)
T 3h99_A 14 TQVAKKILVTCASPYANGS-IHLGHMLEHIQADVWVRYQRMRGHEVNFICADDAHGTPIMLKAQQLGITPEQMIGEMSQE 92 (560)
T ss_dssp ---CCEEEEEECCCBTTSC-CBHHHHHHHHHHHHHHHHHHHTTCEEEEEEEEBCCSHHHHHHHHHHTSCHHHHHHHHHHH
T ss_pred CCCCCcEEEeCCCCCCCCC-cchhhHHHHHHHHHHHHHHHHcCCeEEEeeeecCcCcHHHHHHHHhCCCHHHHHHHHHHH
Confidence 5688999999999999998 999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHcCCccccCCcccCCChhHHHHHHHHHHHHHHCCceeeeccccccCCCCCcccCchhhc---------------
Q 002217 170 FRTQLKSLGFSYDWNREISTIEPAYYKWTQWIFLQLLKRGLAYQAEVPVNWCPALGTVLANEEVV--------------- 234 (952)
Q Consensus 170 ~~~~l~~lgi~~Dw~~~~~T~~~~~~~~v~~~f~~L~~kGliy~~~~~v~wc~~~~t~ls~~Ev~--------------- 234 (952)
|+++|++|||++| ++++|+++.|.+.++++|.+|+++|+||++.+.++||+.|+|+|++.+|+
T Consensus 93 ~~~~~~~lgi~~d--~~~~t~~~~~~~~v~~~~~~L~~~G~iy~~~~~~~~~~~~~~~l~~~~v~g~cp~c~~~~~~gd~ 170 (560)
T 3h99_A 93 HQTDFAGFNISYD--NYHSTHSEENRQLSELIYSRLKENGFIKNRTISQLYDPEKGMFLPDRFVKGTCPKCKSPDQYGDN 170 (560)
T ss_dssp HHHHHHHTTCCCS--EEEESSSHHHHHHHHHHHHHHHHTTCEEEEEEEEEEETTTTEECCGGGEEEECTTTCCSSEETTB
T ss_pred HHHHHHHcCCCCC--CceeCCCHHHHHHHHHHHHHHHHCCCEEEeeeeEeecCccCceecchhcCCCCCCCCCcccccch
Confidence 9999999999766 79999999999999999999999999999999999999999988886653
Q ss_pred --------------cCccccCCCCeEEeeccccchhhhhhhhHhhccCCCCCCchHHHHHHHhhhccCCCceEEEEEecC
Q 002217 235 --------------DGVSERGGHPVIRKPMRQWMLKITEYADRLLDDLDDLDWPESVKEMQRNWIGRSEGAEMDFRVLDS 300 (952)
Q Consensus 235 --------------~~~~~~~~~~~~~~~~~~~~~~i~~y~~~l~~~l~~~~~p~~~~~~~~~~i~~s~~~~v~f~~~~~ 300 (952)
++.|.+||.+++.+...||||++++|++.|.+++++..||+.+++..
T Consensus 171 ce~cg~~~~~~~l~~~~~~~~g~~~~~~~~~~~f~~l~~~~~~l~~~~~~~~~~~~~~~~~------------------- 231 (560)
T 3h99_A 171 CEVCGATYSPTELIEPKSVVSGATPVMRDSEHFFFDLPSFSEMLQAWTRSGALQEQVANKM------------------- 231 (560)
T ss_dssp CTTTCCBCCGGGCEEEEETTTCCCCEEEEEEEEEECGGGGHHHHHHHHHTSCSCHHHHHHH-------------------
T ss_pred hhhccccCChhhhcCCccccCCCCceEEecceEEEEHHHHHHHHHHHHHhCCCCHHHHHHH-------------------
Confidence 44566777889999999999999999998877654433444333222
Q ss_pred CCCccCcEEEEecCCcchhccccEEEECCCCccchhhccccchHHHHHHHHHHhccchhhHhhhhhcccccccceEEecC
Q 002217 301 DGQERDIKITVYTTRPDTIFGATYLVVAPEHPLLSSLVSTTQSQNIEEYKNLASRKSDLERTELQKEKTGVFSGCYARNP 380 (952)
Q Consensus 301 ~~~~~~~~i~i~TT~P~Tl~g~~~v~v~p~~~y~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~P 380 (952)
T Consensus 232 -------------------------------------------------------------------------------- 231 (560)
T 3h99_A 232 -------------------------------------------------------------------------------- 231 (560)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CCCCcccEEecCcccCCCCCCceEecCCCChhhHHHHHHcCCceeeeecCCCCCCccccccccccceEEcccCccccccc
Q 002217 381 ASGEAIPIWVADYVLGSYGTGAIMAVPAHDTRDHEFALKFDISIHSVVMPDDESSSQSEKAYTGEGLIVNSSNLISGLDI 460 (952)
Q Consensus 381 ~~~~~~pv~~~~~V~~~~GTG~V~~~Pah~~~D~~~~~~~~L~i~~vv~~~~~~~~~~~~~y~~~g~l~~~~~~~~~~~~ 460 (952)
T Consensus 232 -------------------------------------------------------------------------------- 231 (560)
T 3h99_A 232 -------------------------------------------------------------------------------- 231 (560)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CCCCHHHHHHHHHHHHHHcCCCcceecccCCceeecccC-CCCcccCceEeCCCCceeecCCCCcCCCCCcccccCCCCC
Q 002217 461 NGLSCQEATSKVIEWAEKTGNGKKKVNYKLRDWLFARQR-YWGEPIPVVFLDGTGETVPLHEAELPLTLPELDDFTPTGT 539 (952)
Q Consensus 461 ~gl~~~~a~~~ii~~l~~~~~~~~~~~~~l~DW~ISRQR-~WG~PIPv~~~~~~~~~~~~~~~~l~v~lp~~~~~~~~G~ 539 (952)
..|+.+ .++|||||||+ +||+|||. ++
T Consensus 232 ------------~~~l~~----------~l~D~~IsR~~~~WG~~iP~----~~-------------------------- 259 (560)
T 3h99_A 232 ------------QEWFES----------GLQQWDISRDAPYFGFEIPN----AP-------------------------- 259 (560)
T ss_dssp ------------HHHHHH----------CCCCEECEEESSCSSCBCTT----CT--------------------------
T ss_pred ------------HHHHhc----------CCCCCCccccCCcCCeeCCC----CC--------------------------
Confidence 233322 27899999999 89999994 11
Q ss_pred CCCCCccccccccccccCCCCCccccCCCccccccccchhh-ee-cCCCCchhHhhhhhhhcCCCce-----eEecCchh
Q 002217 540 GEPPLSKAVSWVQTTEHSSGKPARRETSTMPQWAGSCWYYL-RF-MDPKNSKELVDKTKERYWSPVD-----VYVGGAEH 612 (952)
Q Consensus 540 ~~~~l~~~~~w~~~~~~~~g~~~~re~d~lD~WfdSswy~~-~~-~~p~~~~~~~~~~~~~~w~PvD-----lyv~G~D~ 612 (952)
..|++||||+...|+ .. .++.... +....+.|+|.| +++.|+||
T Consensus 260 --------------------------~~viyvW~da~~~y~s~~~~~~~~~~---~~~~~~~~wp~~~~~~~~~~~G~D~ 310 (560)
T 3h99_A 260 --------------------------GKYFYVWLDAPIGLMGSFKNLCDKRG---DSVSFDEYWKKDSTAELYHFIGKDI 310 (560)
T ss_dssp --------------------------TEEECHHHHHHHHHHHHHHHHHHHHT---CSSHHHHHHBTTCCSEEEEEEEGGG
T ss_pred --------------------------CceEEeCcccchhHHHHHHHHhhccC---ChhhHHHhCcCCCCceeEEEecccc
Confidence 137899999864333 21 1111000 001123456999 99999999
Q ss_pred hHHHHHHHHHHHHHHHHhcCcCCCCcchhhhhhceeccccceeEEecCCCccccCCCCCcccccccccCccccccccCCc
Q 002217 613 AVLHLLYARFWHKVLYDIGVVSTKEPFKCVINQGIILGEMQYMVCKDVDGSYISADSTDTLGEYEQESIPEEKVMKSGDF 692 (952)
Q Consensus 613 ~~~HLly~Rfw~~~L~~~~~~~~~~PFk~l~~~G~vl~~~~y~~~~d~~g~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~ 692 (952)
+.+|. .||...|..+|+ ..| +++++||||+.+
T Consensus 311 ~~fh~---~~~~a~l~~~g~---~~p-~~v~~hg~v~~~----------------------------------------- 342 (560)
T 3h99_A 311 VYFLS---LFWPAMLEGSNF---RKP-SNLFVHGYVTVN----------------------------------------- 342 (560)
T ss_dssp HHHHH---THHHHHHHHTTB---CCC-SEEEEECCEEET-----------------------------------------
T ss_pred chhHH---HHHHHHHHhCCC---CCC-cEEEEEeEEEeC-----------------------------------------
Confidence 98884 578888888775 567 999999998732
Q ss_pred eeeccCcchhhcccccccccCCCCCCChhhHHhhhCchhhhhhhhhcCCCC-CCCCCChhhHHHHH--HHHHHHHHHHhc
Q 002217 693 FVMKDNPNIRLIARAHKMSKSRGNVVNPDDVVTEYGADSLRLYEMFMGPFR-DSKTWNTSGIEGVH--RFLGRMWRLIVG 769 (952)
Q Consensus 693 ~vl~~~~~~~v~~~g~KMSKSkGNvV~P~eii~~YGaDalRl~ll~~~~~~-~~~~~s~~~i~~~~--r~l~~l~~~~~~ 769 (952)
|+|||||+||+|+|.++|++||+|++|||+++.++.. ++.+|+++.+.... ++++++||++..
T Consensus 343 --------------G~KMSKS~GNvv~p~d~i~~~GaDalR~~ll~~~~~~~~d~~f~~~~~~~~~~~~l~~~l~n~~~R 408 (560)
T 3h99_A 343 --------------GAKMSKSRGTFIKASTWLNHFDADSLRYYYTAKLSSRIDDIDLNLEDFVQRVNADIVNKVVNLASR 408 (560)
T ss_dssp --------------TEECCTTTTCCCBHHHHHHHSCHHHHHHHHHHHCCSSCCCEEECHHHHHHHHHHHCCCCCTHHHHT
T ss_pred --------------CeeccccCCCcCCHHHHHHHcCcHHHHHHHHHhCCCCCCCCCcCHHHHHHHHHHHHHHHHHHHHHH
Confidence 7999999999999999999999999999999888776 88899988876522 244444443311
Q ss_pred cCCCCCCCCCCccCCCCCChHHHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHhcccc------------------
Q 002217 770 SSLPDGTFKGGTVVNDEEPTLEQLCTLHKCIAKVTEEIEGTRFNTGISAMMEFINAAYKWEK------------------ 831 (952)
Q Consensus 770 ~~~~~~~~~~~~~~~~~~~d~~~l~~l~~~i~~v~~~~e~~~f~~ai~~l~~f~~~~~~~~~------------------ 831 (952)
......+...+.. .....|.++++++++++++++++|++|+|++|++.+++|++..+.+..
T Consensus 409 ~~~~~~~~~~~~~-~~~~~d~~ll~~l~~~~~~v~~~~e~~~~~~a~~~l~~l~~~~n~Yi~~~kpw~l~k~~~~~~~~~ 487 (560)
T 3h99_A 409 NAGFINKRFDGVL-ASELADPQLYKTFTDAAEVIGEAWESREFGKAVREIMALADLANRYVDEQAPWVVAKQEGRDADLQ 487 (560)
T ss_dssp THHHHHHHSTTBC-CSSCSCHHHHHHHHHTHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHCHHHHTTSTTCHHHHH
T ss_pred HHHHHHHhcCCCC-CCccccHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHHHHhcCchhhcCCcCcHHHHH
Confidence 0000000001111 123468999999999999999999999999999999999976654311
Q ss_pred ----hhHHHHHHHHHHhCCcchhHHHHHHHHcCCCCCccccCCCCCCc
Q 002217 832 ----HPRKIIEPFILLLAPYAPHMSEELWFRLGHSNSLAYESFPKANP 875 (952)
Q Consensus 832 ----~~~~vL~~l~~LLaPf~P~iaEElw~~L~~~~sV~~~~WP~~~~ 875 (952)
.+.++|+.+++||+|||||+|||||+.|+.. +.||.+++
T Consensus 488 ~~~~~~~~~l~~~~~lL~P~~P~~aeei~~~L~~~-----~~w~~~~~ 530 (560)
T 3h99_A 488 AICSMGINLFRVLMTYLKPVLPKLTERAEAFLNTE-----LTWDGIQQ 530 (560)
T ss_dssp HHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHTSC-----CCTGGGGS
T ss_pred HHHHHHHHHHHHHHHHHhccccHHHHHHHHHcCCC-----CChhhhhc
Confidence 1136889999999999999999999999853 78997654
No 16
>3c8z_A Cysteinyl-tRNA synthetase; cysteine ligase, rossmann fold, Cys-SA inhibitor, zinc binding, ATP-binding, aminoacyl-tRNA synthetase; HET: 5CA 1PE EPE; 1.60A {Mycobacterium smegmatis}
Probab=100.00 E-value=3.2e-42 Score=395.95 Aligned_cols=119 Identities=22% Similarity=0.192 Sum_probs=108.8
Q ss_pred CCCcEEEEcCCCCCCCCCCCCchhHHHHHHHHHHHHHHHcCCcccccccccccChHHHHHHHHhCCCchHHHHHHHHHHH
Q 002217 92 SKPKFYVLDMFPYPSGAGLHVGHPLGYTATDILARLKRMQGYNVLHPMGWDAFGLPAEQYAIETGTHPKITTLRNINRFR 171 (952)
Q Consensus 92 ~k~kf~i~~~~Pypng~~lHiGH~~~~~~~Di~~Ry~r~~G~~V~~~~G~D~~Glpie~~a~~~g~~~~~~~~~~~~~~~ 171 (952)
++.++|++ .|+|||. +||||+++++++|+++||+|++||+|.+++|+|+||.||+.+|.+.|.+++++++++++.|+
T Consensus 38 ~~v~~y~~--gPt~yg~-~HiGHar~~v~~DvlaR~lr~~G~~V~~~~~~dd~g~ki~~~A~~~g~~~~~~~~~~~~~~~ 114 (414)
T 3c8z_A 38 PTATMYVC--GITPYDA-THLGHAATYLTFDLVHRLWLDAGHTVQYVQNVTDVDDPLFERAERDGIDWRTLGDRETQLFR 114 (414)
T ss_dssp SEEEEEEC--CCCTTSC-CBHHHHHHHHHHHHHHHHHHHTTCEEEEEEEECCSCHHHHHHHHHHTCCHHHHHHHHHHHHH
T ss_pred CCceEEeC--CCcCCCC-cCccccHHHHHHHHHHHHHHHcCCCEEeCCCCCCccHHHHHHHHHcCCCHHHHHHHHHHHHH
Confidence 45667775 6889998 99999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHcCCc-cccCCcccCCChhHHHHHHHHHHHHHHCCceeeeccc
Q 002217 172 TQLKSLGFS-YDWNREISTIEPAYYKWTQWIFLQLLKRGLAYQAEVP 217 (952)
Q Consensus 172 ~~l~~lgi~-~Dw~~~~~T~~~~~~~~v~~~f~~L~~kGliy~~~~~ 217 (952)
+++++|||+ +| .+.+|++ |...++++|.+|+++|+||++..+
T Consensus 115 ~~~~~Lgi~~~d--~~~r~t~--~~~~~~~~~~~L~~kG~~Y~~~~~ 157 (414)
T 3c8z_A 115 EDMAALRVLPPH--DYVAATD--AIAEVVEMVEKLLASGAAYIVEDA 157 (414)
T ss_dssp HHHHHTTCCCCS--EEEEGGG--CHHHHHHHHHHHHHHTSEEECSCS
T ss_pred HHHHHcCCCCCc--ceecccc--hHHHHHHHHHHHHHCCCEEeccCC
Confidence 999999998 77 4566654 889999999999999999998643
No 17
>3sp1_A Cysteinyl-tRNA synthetase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, LYME disease; HET: AMP; 2.55A {Borrelia burgdorferi}
Probab=100.00 E-value=7.1e-42 Score=393.69 Aligned_cols=126 Identities=18% Similarity=0.130 Sum_probs=102.4
Q ss_pred CCcEEEEcCCCCCCCCCCCCchhHHHHHHHHHHHHHHHcCCcccccccc----------cccChHHHHHHHHhCCCchHH
Q 002217 93 KPKFYVLDMFPYPSGAGLHVGHPLGYTATDILARLKRMQGYNVLHPMGW----------DAFGLPAEQYAIETGTHPKIT 162 (952)
Q Consensus 93 k~kf~i~~~~Pypng~~lHiGH~~~~~~~Di~~Ry~r~~G~~V~~~~G~----------D~~Glpie~~a~~~g~~~~~~ 162 (952)
+.++|++ +|+++|. +||||++++++.|+++||+||+||+|.|++|+ |+||.||+.+|.+.|++|+++
T Consensus 42 ~v~~Yvc--gPTvYg~-~HIGHar~~v~~Dvl~R~lr~~Gy~V~~v~niTDvGhltG~~DehddKI~~~A~~~g~~~~e~ 118 (501)
T 3sp1_A 42 NVKVYAC--GPTVYNY-AHIGNFRTYIFGDLLIKTLRFLGYKVNYAMNITDIGHLTGDLDDGEDKVAKTAREKGLTVYEI 118 (501)
T ss_dssp CEEEEEC--CCBCSSC-CCHHHHHHHHHHHHHHHHHHHHTCCEEEEEEEBCSCCC-------------------CCHHHH
T ss_pred cceEEeC--CCcCCCC-cchhhhHHHHHHHHHHHHHHHcCCceeEEeeecccccccCCCCCCCcHHHHHHHHcCCCHHHH
Confidence 5678875 5788898 99999999999999999999999999999654 777999999999999999999
Q ss_pred HHHHHHHHHHHHHHcCCccccCCcccCCChhHHHHHHHHHHHHHHCCceeeeccccccCCCC
Q 002217 163 TLRNINRFRTQLKSLGFSYDWNREISTIEPAYYKWTQWIFLQLLKRGLAYQAEVPVNWCPAL 224 (952)
Q Consensus 163 ~~~~~~~~~~~l~~lgi~~Dw~~~~~T~~~~~~~~v~~~f~~L~~kGliy~~~~~v~wc~~~ 224 (952)
++++++.|++++++|||++||. .+++++|...++++|.+|+++|+||++...|+||+.+
T Consensus 119 a~~~~~~f~~d~~~Lgi~~d~~---~~~~t~hi~~v~~~i~~L~~kG~aY~~~g~Vyf~v~~ 177 (501)
T 3sp1_A 119 SEFFTEAFFNDCRKLNIVYPDK---VLVASKHIPIMIEVVKILEEKKITYFSNGNVYFDTSC 177 (501)
T ss_dssp HHHHHHHHHHHHHHTTCCCCSE---EEEGGGCHHHHHHHHHHHHHTTCEEEETTEEEECGGG
T ss_pred HHHHHHHHHHHHHHcCCCCCCc---ccCcchHHHHHHHHHHHHHHCCCEEEeCCcEEecCCc
Confidence 9999999999999999999973 3557899999999999999999999999999999987
No 18
>3tqo_A Cysteinyl-tRNA synthetase; protein synthesis, ligase; 2.30A {Coxiella burnetii}
Probab=100.00 E-value=4e-41 Score=386.22 Aligned_cols=129 Identities=22% Similarity=0.168 Sum_probs=119.7
Q ss_pred CCCCcEEEEcCCCCCCCCCCCCchhHHHHHHHHHHHHHHHcCCcccccccccccChHHHHHHHHhCCCchHHHHHHHHHH
Q 002217 91 TSKPKFYVLDMFPYPSGAGLHVGHPLGYTATDILARLKRMQGYNVLHPMGWDAFGLPAEQYAIETGTHPKITTLRNINRF 170 (952)
Q Consensus 91 ~~k~kf~i~~~~Pypng~~lHiGH~~~~~~~Di~~Ry~r~~G~~V~~~~G~D~~Glpie~~a~~~g~~~~~~~~~~~~~~ 170 (952)
+++.++|++ .|+|+|. +||||++++++.|+++||+||+||+|.|++|||+||.||+.+|.+.|.+++++++++++.|
T Consensus 23 ~~~v~~Yvc--GPtvy~~-~HIGHaR~~v~~Dvl~R~lr~~Gy~V~~v~n~dD~ddKIi~~A~~~g~~~~e~a~~~~~~f 99 (462)
T 3tqo_A 23 SGKVKLYVC--GMTVYDY-MHIGHGRSWIIFDMVVRYLRMRGYEVTFVRNITDIDDKIIKRAGENKESPAALAERFIQIL 99 (462)
T ss_dssp TTEEEEEEC--CCBTTSC-CBHHHHHHHHHHHHHHHHHHHTTCEEEEEECBBCCCHHHHHHHHHTTSCHHHHHHHHHHHH
T ss_pred CCeEEEEeC--CCcCCCC-CchhhhHHHHHHHHHHHHHHHcCCceEEecCcCCCCcHHHHHHHHcCCCHHHHHHHHHHHH
Confidence 455667764 6899998 9999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHcCCccccCCcccCCChhHHHHHHHHHHHHHHCCceeee-ccccccCCCCC
Q 002217 171 RTQLKSLGFSYDWNREISTIEPAYYKWTQWIFLQLLKRGLAYQA-EVPVNWCPALG 225 (952)
Q Consensus 171 ~~~l~~lgi~~Dw~~~~~T~~~~~~~~v~~~f~~L~~kGliy~~-~~~v~wc~~~~ 225 (952)
++++++|||++||..+..| +|...++++|.+|+++|++|++ ...|+||+.|.
T Consensus 100 ~~d~~~LgI~~d~~~praT---e~i~~i~~~i~~L~ekG~aY~~~~g~Vyfdv~~~ 152 (462)
T 3tqo_A 100 HEDEKALRVLSPDQEPRAT---QYVPEIIKLIQKLLDNQYAYTGQNGDVFFDVRRF 152 (462)
T ss_dssp HHHHHHHTCCCCSBCCBGG---GCHHHHHHHHHHHHHHTSEEECTTSCEEECTTTC
T ss_pred HHHHHHcCCCCCccccChh---hHHHHHHHHHHHHHHCCCEEEecCCcEEeccccc
Confidence 9999999999998765655 8999999999999999999999 78999999875
No 19
>1li5_A Cysrs, cysteinyl-tRNA synthetase, transfer RNA-Cys; cysteine, E.coli, ligase; 2.30A {Escherichia coli} SCOP: a.27.1.1 c.26.1.1 PDB: 1li7_A 1u0b_B
Probab=100.00 E-value=7.4e-38 Score=363.32 Aligned_cols=127 Identities=21% Similarity=0.159 Sum_probs=115.2
Q ss_pred CCCCcEEEEcCCCCCCCCCCCCchhHHHHHHHHHHHHHHHcCCcccccccccccChHHHHHHHHhCCCchHHHHHHHHHH
Q 002217 91 TSKPKFYVLDMFPYPSGAGLHVGHPLGYTATDILARLKRMQGYNVLHPMGWDAFGLPAEQYAIETGTHPKITTLRNINRF 170 (952)
Q Consensus 91 ~~k~kf~i~~~~Pypng~~lHiGH~~~~~~~Di~~Ry~r~~G~~V~~~~G~D~~Glpie~~a~~~g~~~~~~~~~~~~~~ 170 (952)
+++.++|++ .|+|+|. +||||++++++.|+++||+|++||+|.++.|+|++|.+|+.+|.+.|.+++++++++++.|
T Consensus 20 ~~~v~~yv~--gPt~y~~-~HiGHar~~v~~D~l~R~lr~~G~~V~~v~~~tD~d~ki~~~A~~~g~~~~~~~~~~~~~f 96 (461)
T 1li5_A 20 AGEVGMYVC--GITVYDL-CHIGHGRTFVAFDVVARYLRFLGYKLKYVRNITDIDDKIIKRANENGESFVAMVDRMIAEM 96 (461)
T ss_dssp TTEEEEEEC--CCBSSSC-CBHHHHHHHHHHHHHHHHHHHHTCEEEEEECBBCCSHHHHHHHHHTTCCHHHHHHHHHHHH
T ss_pred CCCeeEEEc--CCcCCCC-CcccccHHHHHHHHHHHHHHHcCCCEEEeecCCCCcHHHHHHHHHcCCCHHHHHHHHHHHH
Confidence 456678876 5677798 9999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHcCCcc-ccCCcccCCChhHHHHHHHHHHHHHHCCceeee-ccccccCCCC
Q 002217 171 RTQLKSLGFSY-DWNREISTIEPAYYKWTQWIFLQLLKRGLAYQA-EVPVNWCPAL 224 (952)
Q Consensus 171 ~~~l~~lgi~~-Dw~~~~~T~~~~~~~~v~~~f~~L~~kGliy~~-~~~v~wc~~~ 224 (952)
++++++|||.+ | .+.+|+ +|...+++++.+|.++|++|++ ...|+||..|
T Consensus 97 ~~~~~~LgI~~~d--~~~r~t--~~~~~~~~~i~~L~~~G~aY~~~~g~v~f~~~~ 148 (461)
T 1li5_A 97 HKDFDALNILRPD--MEPRAT--HHIAEIIELTEQLIAKGHAYVADNGDVMFDVPT 148 (461)
T ss_dssp HHHHHHTTCCCCS--BCCBGG--GCHHHHHHHHHHHHHTTSEEECTTSCEEECGGG
T ss_pred HHHHHHcCCCCCc--cccccc--chHHHHHHHHHHHHHCCCEEEecCCCEEEeccc
Confidence 99999999997 5 344444 4899999999999999999999 8889999876
No 20
>3o0a_A Leucyl-tRNA synthetase subunit alpha; CP1 hydrolytic DOM ligase, aminoacyl-tRNA synthetase, ATP-binding, nucleotide- protein biosynthesis; 1.77A {Aquifex aeolicus} PDB: 3pz0_A 3pz5_A
Probab=100.00 E-value=2e-37 Score=323.05 Aligned_cols=197 Identities=49% Similarity=0.840 Sum_probs=158.2
Q ss_pred ccCCCceEEEEEecCCCC----------------ccCcEEEEecCCcchhccccEEEECCCCccchhhccccch------
Q 002217 286 GRSEGAEMDFRVLDSDGQ----------------ERDIKITVYTTRPDTIFGATYLVVAPEHPLLSSLVSTTQS------ 343 (952)
Q Consensus 286 ~~s~~~~v~f~~~~~~~~----------------~~~~~i~i~TT~P~Tl~g~~~v~v~p~~~y~~~~~~~~~~------ 343 (952)
|||+|++|+|++.+.+.. ..+.+++||||||||||||+||||+|+|+|+..+...+..
T Consensus 1 gkS~G~~i~F~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~vwTTtPwTL~gn~~iav~pe~~yv~~~~~~~~~~~~~~~ 80 (219)
T 3o0a_A 1 GRSEGALIRFYVEIEEPEKFLNCVPEELKETLLKEKRIYIDVFTTRPDTVFGATFVVLAPEHPLVPVLACIGERLGNACY 80 (219)
T ss_dssp ---CCEEEEEEEECSCGGGTGGGSCHHHHHHHHHHSEEEEEEEESCGGGGGGCCEEEECTTCTHHHHHHHHHHHTTCCCH
T ss_pred CceeEEEEEEEecCCccccccccccchhhhhcccCCCCEEEEEECCcchhhcccEEEECCCCcEEEEEecCCccccchhH
Confidence 789999999999643210 0126899999999999999999999999999887654333
Q ss_pred HHHHHHHHHHhccchhhHhhhhhcccccccceEEecCCCCCcccEEecCcccCCCCCCceEecCCCChhhHHHHHHcCCc
Q 002217 344 QNIEEYKNLASRKSDLERTELQKEKTGVFSGCYARNPASGEAIPIWVADYVLGSYGTGAIMAVPAHDTRDHEFALKFDIS 423 (952)
Q Consensus 344 ~~~~~y~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~P~~~~~~pv~~~~~V~~~~GTG~V~~~Pah~~~D~~~~~~~~L~ 423 (952)
...++|++.+.+....++..+ ..+.|.|+|.++.||++++++|||.+|||++++|||+||+|||||++||++|++||||
T Consensus 81 ~~~~~~i~~~~~~~~~~~~~~-~~~~G~l~G~~~~~Pl~~~~iPI~~adyV~~~~GTGaV~~aPaHd~~D~~~~~k~~Lp 159 (219)
T 3o0a_A 81 SDVENFVEKMKKMSTRERTME-EDKEGVFLGVYATNPANGEKIPVWSANYVLYEYGTGAIMCVPAHDQRDWEFAKKYDLP 159 (219)
T ss_dssp HHHHHHHHHHHTCCHHHHHSC-SSCCEEEEEEEEECTTTCCEEEEEEETTSCTTSTTSEEEECTTTCHHHHHHHHHHTCC
T ss_pred HHHHHHHHHHHhhccccceeE-EEeeeEEcCCEEECCCCCCeeeEEEecccccCCCCCeEEECCCCCHHHHHHHHHcCCC
Confidence 445677777666666655444 5566789999999999999999999999999999999999999999999999999999
Q ss_pred eeeeecCCCCCCccccccccccceEEcccCcccccccCCCCHHHHHHHHHHHHHHcCCCcceecccC
Q 002217 424 IHSVVMPDDESSSQSEKAYTGEGLIVNSSNLISGLDINGLSCQEATSKVIEWAEKTGNGKKKVNYKL 490 (952)
Q Consensus 424 i~~vv~~~~~~~~~~~~~y~~~g~l~~~~~~~~~~~~~gl~~~~a~~~ii~~l~~~~~~~~~~~~~l 490 (952)
++++|++.+ ......+.|+++|.|+++. .++||.+.+|++.|+++|++.|.+.+.++|||
T Consensus 160 i~~vi~~~~-~~~~~~g~ft~~g~~~~~~------~~~Gl~~~eA~~~Ii~~L~~~g~l~~~~~yrL 219 (219)
T 3o0a_A 160 IKVVVKPEG-AWDFEKGAYEGKGTLVNSD------GFDGLDSETAKRKITEWLQDRGLGEKKVSYRL 219 (219)
T ss_dssp CCCCEECSS-CCCTTTCCCCSCCEECSCG------GGTTCBHHHHHHHHHHHHHHTTSEEEC-----
T ss_pred ceeeeCCcc-ccccccccccccceEecCC------CCCCCCHHHHHHHHHHHHHHCCCeeeeeeecC
Confidence 999998753 1122356888999998765 49999999999999999999999999999875
No 21
>2ajg_A Leucyl-tRNA synthetase; editing domain, ligase; 2.00A {Escherichia coli} PDB: 2ajh_A 2aji_A
Probab=100.00 E-value=2.6e-35 Score=303.48 Aligned_cols=185 Identities=41% Similarity=0.673 Sum_probs=155.3
Q ss_pred CCCceEEEEEecCCCCccCcEEEEecCCcchhccccEEEECCCCccchhhccccchHHHHHHHHHHhccchhhHhhhhhc
Q 002217 288 SEGAEMDFRVLDSDGQERDIKITVYTTRPDTIFGATYLVVAPEHPLLSSLVSTTQSQNIEEYKNLASRKSDLERTELQKE 367 (952)
Q Consensus 288 s~~~~v~f~~~~~~~~~~~~~i~i~TT~P~Tl~g~~~v~v~p~~~y~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~ 367 (952)
.+|++|+|++.+ .+.+|+||||||||||||+||||+|+++|+..... +...+++|++.+...+..+...+...
T Consensus 10 ~~g~~v~F~~~~-----~~~~l~i~TTrP~TL~g~~avav~P~~~yv~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~ 82 (196)
T 2ajg_A 10 GEGVEITFNVND-----YDNTLTVYTTRPDTFMGCTYLAVAAGHPLAQKAAE--NNPELAAFIDECRNTKVAEAEMATME 82 (196)
T ss_dssp -CEEEEEEEBTT-----CSSEEEEEESCGGGGGGCCEEEECTTSHHHHHHHT--TCHHHHHHHHHHHHCCCCGGGGGGSC
T ss_pred CceEEEEEEeCC-----CCcEEEEEECChhhhcCccEEEECCCCcEEEEEcC--CHHHHHHHHHHhhcccccceEEEeee
Confidence 478999999943 24689999999999999999999999999877532 34556778776665555555555567
Q ss_pred ccccccceEEecCCCCCcccEEecCcccCCCCCCceEecCCCChhhHHHHHHcCCceeeeecCCCCCCcc-ccccccccc
Q 002217 368 KTGVFSGCYARNPASGEAIPIWVADYVLGSYGTGAIMAVPAHDTRDHEFALKFDISIHSVVMPDDESSSQ-SEKAYTGEG 446 (952)
Q Consensus 368 ~~~~l~g~~~~~P~~~~~~pv~~~~~V~~~~GTG~V~~~Pah~~~D~~~~~~~~L~i~~vv~~~~~~~~~-~~~~y~~~g 446 (952)
++|.|+|+++.||++++++|||.++||++++|||+||+|||||++||++|++||||++++|++.++...+ ..+.|+++|
T Consensus 83 k~g~l~G~~~~~P~~~~~ipV~~ad~V~~~~GTG~V~~aPah~~~D~~~~~k~~L~i~~vI~~~~g~~~d~~~g~y~~~g 162 (196)
T 2ajg_A 83 KKGVDTGFKAVHPLTGEEIPVWAANFVLMEYGTGAVMAVPGHDQRDYEFASKYGLNIKPVILAADGSEPDLSQQALTEKG 162 (196)
T ss_dssp CCEEEEEEEEECTTTCCEEEEEEETTCCSSSSCSEEEECTTTCHHHHHHHHHHTCCCCCCBCCTTSSCCCCSSSCCCSCC
T ss_pred eCCEEcCCEEECCCCCCeeEEEEeCCCccCCCCceEEECCCCCHHHHHHHHHcCCCceeEEeCCcCcccccccccccCCc
Confidence 8899999999999999999999999999999999999999999999999999999999999854332212 356888889
Q ss_pred eEEcccCcccccccCCCCHHHHHHHHHHHHHHcCCCcce
Q 002217 447 LIVNSSNLISGLDINGLSCQEATSKVIEWAEKTGNGKKK 485 (952)
Q Consensus 447 ~l~~~~~~~~~~~~~gl~~~~a~~~ii~~l~~~~~~~~~ 485 (952)
.|+|+. +++||.+++|++.|+++|++.|.+.++
T Consensus 163 ~~~ns~------~~~Gl~v~eA~~~Ii~~L~~~g~~~~~ 195 (196)
T 2ajg_A 163 VLFNSG------EFNGLDHEAAFNAIADKLTAMGVGERK 195 (196)
T ss_dssp CBCSSG------GGTTCCHHHHHHHHHHHHHHTTSEEEE
T ss_pred eEecCc------ccCCeEHHHHHHHHHHHHHHCCCceee
Confidence 888765 499999999999999999999987654
No 22
>1wny_A Isoleucyl-tRNA synthetase; ligase, structural genomics, NPPSFA, national project on protein structural and functional analyses; 1.60A {Thermus thermophilus} PDB: 1wnz_A* 1wk8_A* 1udz_A 1ue0_A
Probab=99.97 E-value=1e-32 Score=281.88 Aligned_cols=178 Identities=20% Similarity=0.203 Sum_probs=136.9
Q ss_pred cCCCceEEEEEecCCC-CccCcEEEEecCCcchhccccEEEECCCCccchhhccccchHHHHHHHHHHhccchhhHhhhh
Q 002217 287 RSEGAEMDFRVLDSDG-QERDIKITVYTTRPDTIFGATYLVVAPEHPLLSSLVSTTQSQNIEEYKNLASRKSDLERTELQ 365 (952)
Q Consensus 287 ~s~~~~v~f~~~~~~~-~~~~~~i~i~TT~P~Tl~g~~~v~v~p~~~y~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~~ 365 (952)
+|+|++|+|++.+... ...+.+++||||||||||||+||||||+++|+......+.....+++.+..... ..+ .+.
T Consensus 2 ~S~~i~V~F~~~~~~~~~~~~~~l~i~TTrP~Tl~g~~aiav~p~~~y~~~~~~~~~~i~a~~~~~~~~~~-~~~--~~~ 78 (186)
T 1wny_A 2 QDPSVYVRFPLKEPKKLGLEKASLLIWTTTPWTLPGNVAAAVHPEYTYAAFQVGDEALILEEGLGRKLLGE-GTP--VLK 78 (186)
T ss_dssp -CCEEEEEEEBSCGGGGTCSSEEEEEEESCGGGGGGCCEEEECTTSEEEEEEETTEEEEEEHHHHHHHHCT-TSC--EEE
T ss_pred ccceEEEEEEeCCCccccCCCcEEEEEECCcchhhcceEEEECCCCcEEEEEeCCcchHHHHHHHHHHhhc-CcE--EEE
Confidence 5899999999954210 011478999999999999999999999999988765433222223444433222 111 122
Q ss_pred hcccccccceEEecCCC---CCcccEEecCcccCCCCCCceEecCCCChhhHHHHHHcCCceeeeecCCCCCCccccccc
Q 002217 366 KEKTGVFSGCYARNPAS---GEAIPIWVADYVLGSYGTGAIMAVPAHDTRDHEFALKFDISIHSVVMPDDESSSQSEKAY 442 (952)
Q Consensus 366 ~~~~~~l~g~~~~~P~~---~~~~pv~~~~~V~~~~GTG~V~~~Pah~~~D~~~~~~~~L~i~~vv~~~~~~~~~~~~~y 442 (952)
..+|..|+|.++.||++ ++.+|||.++||++++|||+||+|||||++||++|++||||++++|+++
T Consensus 79 ~~~G~~l~g~~~~~P~~~~~~~~ipi~~~~~V~~~~GTG~V~~aPahg~~D~~~~~~~~L~i~~~id~~----------- 147 (186)
T 1wny_A 79 TFPGKALEGLPYTPPYPQALEKGYFVVLADYVSQEDGTGIVHQAPAFGAEDLETARVYGLPLLKTVDEE----------- 147 (186)
T ss_dssp EEEHHHHTTCBBCCSSCCCCSSCCBEEECTTCCSSSSCSCEEECGGGCHHHHHHHHHHTCCCCCCBCTT-----------
T ss_pred EEEcccccCcEEECCccccCCCEEEEEEeCcCcCCCCcccEEEcCCCCHHHHHHHHHcCCceEeeeCCC-----------
Confidence 33344599999999997 8999999999999999999999999999999999999999999999864
Q ss_pred cccceEEcccCcccccccCCCCHHHHHHHHHHHHHHcCCCcceecc
Q 002217 443 TGEGLIVNSSNLISGLDINGLSCQEATSKVIEWAEKTGNGKKKVNY 488 (952)
Q Consensus 443 ~~~g~l~~~~~~~~~~~~~gl~~~~a~~~ii~~l~~~~~~~~~~~~ 488 (952)
|.+.++ . ++||.+.+|++.|+++|++.|.+.+..+|
T Consensus 148 ---G~~~~~------~-~~Gl~v~~A~~~Ii~~L~~~g~l~~~~~~ 183 (186)
T 1wny_A 148 ---GKLLVE------P-FKGLYFREANRAILRDLRGRGLLFKEESY 183 (186)
T ss_dssp ---SBBCST------T-CTTCBHHHHHHHHHHHHHHTTCEEEEEC-
T ss_pred ---ccCccC------C-CCCcCHHHHHHHHHHHHHHCCCeecceeE
Confidence 333221 2 88999999999999999999988776554
No 23
>1wka_A Valyl-tRNA synthetase; editing, CP1, fidelity, thermus thrmophilus, translation, amino acid, structural genomics; 1.70A {Thermus thermophilus} SCOP: b.51.1.1 PDB: 1wk9_A*
Probab=99.97 E-value=1.4e-30 Score=255.27 Aligned_cols=143 Identities=28% Similarity=0.381 Sum_probs=122.3
Q ss_pred CCCceEEEEEecCCCCccCcEEEEecCCcchhccccEEEECCCCccchhhccccchHHHHHHHHHHhccchhhHhhhhhc
Q 002217 288 SEGAEMDFRVLDSDGQERDIKITVYTTRPDTIFGATYLVVAPEHPLLSSLVSTTQSQNIEEYKNLASRKSDLERTELQKE 367 (952)
Q Consensus 288 s~~~~v~f~~~~~~~~~~~~~i~i~TT~P~Tl~g~~~v~v~p~~~y~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~ 367 (952)
+..++|+|++ +. +.+|+||||||||||||+||||||+++..
T Consensus 4 ~~~~~v~F~~-~~-----~~~l~i~TTrP~Tl~g~~aiav~P~~~~~--------------------------------- 44 (147)
T 1wka_A 4 GKLYTLRYEV-EG-----GGFIEIATVRPETVFADQAIAVHPEDERY--------------------------------- 44 (147)
T ss_dssp CEEEEEEEEB-TT-----SCEEEEEESCGGGGGGCCEEEECTTCTTT---------------------------------
T ss_pred ceEEEEEEEC-CC-----CcEEEEEECCceecccceEEEECCCCchH---------------------------------
Confidence 4567999998 32 36899999999999999999999998631
Q ss_pred ccccccceEEecCCCCCcccEEecCcccCCCCCCceEecCCCChhhHHHHHHcCCceeeeecCCCCCCccccccccccce
Q 002217 368 KTGVFSGCYARNPASGEAIPIWVADYVLGSYGTGAIMAVPAHDTRDHEFALKFDISIHSVVMPDDESSSQSEKAYTGEGL 447 (952)
Q Consensus 368 ~~~~l~g~~~~~P~~~~~~pv~~~~~V~~~~GTG~V~~~Pah~~~D~~~~~~~~L~i~~vv~~~~~~~~~~~~~y~~~g~ 447 (952)
..|.|+++.||++++++||+.++||++++|||+||+|||||++||++|++||||++++|+++ |+
T Consensus 45 --~~l~g~~~~~P~~~~~ipI~~~~~V~~~~GTG~V~~~Pah~~~D~~~~~~~~L~~~~~id~~--------------G~ 108 (147)
T 1wka_A 45 --RHLLGKRARIPLTEVWIPILADPAVEKDFGTGALKVTPAHDPLDYEIGERHGLKPVSVINLE--------------GR 108 (147)
T ss_dssp --GGGTTCEEECTTSSCEEEEEECTTCCTTSTTSEEEECTTTCHHHHHHHHHHTCCCCCSBCTT--------------SB
T ss_pred --HHhcCCEEECCCCCCeeEEEEeCccccCCCCCcEEEccCCCHHHHHHHHHcCCCcceEECCC--------------CE
Confidence 13789999999999999999999999999999999999999999999999999999999865 44
Q ss_pred EEcccCcccccccCCCCHHHHHHHHHHHHHHcCCCcceecc
Q 002217 448 IVNSSNLISGLDINGLSCQEATSKVIEWAEKTGNGKKKVNY 488 (952)
Q Consensus 448 l~~~~~~~~~~~~~gl~~~~a~~~ii~~l~~~~~~~~~~~~ 488 (952)
+ ++.. ....++||.+.+|++.|+++|++.|.+.+..+|
T Consensus 109 ~-~~~~--~~~~~~Gl~~~~A~~~Ii~~L~~~g~l~~~~~~ 146 (147)
T 1wka_A 109 M-EGER--VPEALRGLDRFEARRKAVELFREAGHLVKEEDY 146 (147)
T ss_dssp B-CSTT--SCGGGTTSBHHHHHHHHHHHHHHHTCEEEEEEC
T ss_pred E-cCCC--cccccCCcCHHHHHHHHHHHHHHCCCeeeeeEc
Confidence 4 3210 001389999999999999999999988776654
No 24
>2wfd_A Leucyl-tRNA synthetase, cytoplasmic; aminoacyl-tRNA synthetase, phosphoprotein, editing domain, nucleotide-binding, hydrolysis of MIS-charged trnas; 3.25A {Homo sapiens}
Probab=99.95 E-value=2.9e-29 Score=267.77 Aligned_cols=184 Identities=18% Similarity=0.281 Sum_probs=129.9
Q ss_pred eEEEEEecCCCC------ccCcEEEEecCCcchhccccEEEECCCCccchhhccccc-----hHHH--HHHHHHHhccch
Q 002217 292 EMDFRVLDSDGQ------ERDIKITVYTTRPDTIFGATYLVVAPEHPLLSSLVSTTQ-----SQNI--EEYKNLASRKSD 358 (952)
Q Consensus 292 ~v~f~~~~~~~~------~~~~~i~i~TT~P~Tl~g~~~v~v~p~~~y~~~~~~~~~-----~~~~--~~y~~~~~~~~~ 358 (952)
-|+|++.+.... ..+.+|+||||||||||||+||||||+|+|+.+...... .... ..|+.......+
T Consensus 9 ~ikf~v~~~~~~~~~~~~~~~~~l~v~TTrP~TL~g~talav~Pe~~yv~~~~~~~~~~i~a~~~~~~~~~~~~~~~~~~ 88 (252)
T 2wfd_A 9 LLKLKVLEPYPSKLSGLKGKNIFLVAATLRPETMFGQTNCWVRPDMKYIGFETVNGDIFICTQKAARNMSYQGFTKDNGV 88 (252)
T ss_dssp EEEEEEESSCCGGGGGGTTSCEEEEEEESCGGGGGGCCEEEECSSSCCEEEECTTSCEEEECHHHHHHHHTTTSSSSTTC
T ss_pred EEEEEccCcchhhhhhccCCCCEEEEEECChHHHhhhheEEECCCCcEEEEEecCCcEEEEhhhhHHHHHHHHhhccCcc
Confidence 478887643221 235899999999999999999999999999875431110 0111 112211111112
Q ss_pred hhHhhhhhcccccccceEEecCCCC-CcccEEecCcccCCCCCCceEecCCCChhhHH----------HHHHcCCc----
Q 002217 359 LERTELQKEKTGVFSGCYARNPASG-EAIPIWVADYVLGSYGTGAIMAVPAHDTRDHE----------FALKFDIS---- 423 (952)
Q Consensus 359 ~~~~~~~~~~~~~l~g~~~~~P~~~-~~~pv~~~~~V~~~~GTG~V~~~Pah~~~D~~----------~~~~~~L~---- 423 (952)
.+ .+...+|..|+|.++.||+++ +.+|||+++||++++|||+||+|||||++||+ ||++||||
T Consensus 89 ~~--~~~~~~G~~l~G~~~~~Pl~~~~~ipV~~adyV~~~~GTG~V~~vPaHd~~D~~~~~~l~~~~~fa~kygL~~~~~ 166 (252)
T 2wfd_A 89 VP--VVKELMGEEILGASLSAPLTSYKVIYVLPMLTIKEDKGTGVVTSVPSDSPDDIAALRDLKKKQALRAKYGIRDDMV 166 (252)
T ss_dssp CC--EEEECCHHHHTTCEEECSSCSSSCEEEEECSCCCSSSSCSSEEECTTTCHHHHHHHHHHHHCSHHHHTTTCCGGGT
T ss_pred cE--EEEEEEcccccCCEEEcCCCCCceeEEEEeCcccCCCCCCeEEEcCCCCHHHHHHHhhhccchhHHHHcCCCchhc
Confidence 11 122233334999999999999 58999999999999999999999999999999 68899998
Q ss_pred ----eeeeecCCC-CCC--------------cc-------ccccccc---cceEEcccCcccccccCCCCHHHHHHHHHH
Q 002217 424 ----IHSVVMPDD-ESS--------------SQ-------SEKAYTG---EGLIVNSSNLISGLDINGLSCQEATSKVIE 474 (952)
Q Consensus 424 ----i~~vv~~~~-~~~--------------~~-------~~~~y~~---~g~l~~~~~~~~~~~~~gl~~~~a~~~ii~ 474 (952)
++.+|+.++ |.. .+ ...+|.+ +|+|+ +. +++||.+++|++.|++
T Consensus 167 ~~~~~~~vI~~~~~g~~~~~~~~~~~~i~~~~d~~~l~~~~~~~y~~~~~~G~~~-~~------~~~Gl~v~eA~~~Ii~ 239 (252)
T 2wfd_A 167 LPFEPVPVIEIPGFGNLSAVTICDELKIQSQNDREKLAEAKEKIYLKGFYEGIML-VD------GFKGQKVQDVKKTIQK 239 (252)
T ss_dssp TTCCCCCCEEBTTTBSSHHHHHHHHTTCCSTTCHHHHHHHHHHHHHHHHHHCEEC-ST------TSTTCBHHHHHHHHHH
T ss_pred cccCceeEEecCcccccchhhhhhhccccCcchhhhhhhhhhhhccccccCceEe-ee------ccCCeEHHHHHHHHHH
Confidence 567776542 110 00 1234544 58887 43 5999999999999999
Q ss_pred HHHHcCCCcc
Q 002217 475 WAEKTGNGKK 484 (952)
Q Consensus 475 ~l~~~~~~~~ 484 (952)
+|++.|.+..
T Consensus 240 ~L~~~g~~~~ 249 (252)
T 2wfd_A 240 KMIDAGDALI 249 (252)
T ss_dssp HHHHTTSEEE
T ss_pred HHHHCCCCcc
Confidence 9999987653
No 25
>2wfg_A Cytosolic leucyl-tRNA synthetase; ligase, editing domain, hydrolysis of MIS-charged trnas, benzoxaborole, anti-fungal; HET: ZZB; 2.20A {Candida albicans} PDB: 2wfe_A*
Probab=99.95 E-value=9.7e-29 Score=264.59 Aligned_cols=174 Identities=18% Similarity=0.250 Sum_probs=125.3
Q ss_pred CcEEEEecCCcchhccccEEEECCCCccchhhcccc-------chHHHHHHHHHHhccchhhHhhhhhcccccccceEEe
Q 002217 306 DIKITVYTTRPDTIFGATYLVVAPEHPLLSSLVSTT-------QSQNIEEYKNLASRKSDLERTELQKEKTGVFSGCYAR 378 (952)
Q Consensus 306 ~~~i~i~TT~P~Tl~g~~~v~v~p~~~y~~~~~~~~-------~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~l~g~~~~ 378 (952)
+.+|+||||||||||||+||||||+++|+.+....+ ....+.+|+..+...+++ ..+...++..|+|.++.
T Consensus 32 ~~~l~v~TTrP~TL~g~talav~Pe~~yv~v~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~--~~~~~~~G~~L~G~~~~ 109 (261)
T 2wfg_A 32 KVYLVAATLRPETMYGQTCCFVSPKIDYGVFDAGNGDYFITTERAFKNMSFQNLTPKRGYY--KPLFTINGKTLIGSRID 109 (261)
T ss_dssp EEEEEEEESCGGGGGGCCEEEECTTCEEEEEECSTTEEEEECHHHHHHHTTTTCSSSTTCC--CCSEEEEHHHHTTCEEE
T ss_pred CCEEEEEECCchHHhhhheEEECCCCceEEEEecCceEEEhHHHHHHHHHHHhhhhccccc--EEEEEEecccccCCEEE
Confidence 478999999999999999999999999987654321 111112222111111111 11222334459999999
Q ss_pred cCCC-CCcccEEecCcccCCCCCCceEecCCCChhhHHHHHH-------cC-------CceeeeecCCC-CCCcc-----
Q 002217 379 NPAS-GEAIPIWVADYVLGSYGTGAIMAVPAHDTRDHEFALK-------FD-------ISIHSVVMPDD-ESSSQ----- 437 (952)
Q Consensus 379 ~P~~-~~~~pv~~~~~V~~~~GTG~V~~~Pah~~~D~~~~~~-------~~-------L~i~~vv~~~~-~~~~~----- 437 (952)
||++ ++.+|||+++||++++|||+||+|||||++||++|++ || ||++++|++.+ +....
T Consensus 110 ~Pl~~~~~ipV~~adyV~~~~GTG~V~~vPaHd~~Dy~~~~kl~~~~~~ygi~~~~~~L~i~~vId~~~~g~~~~~~~~~ 189 (261)
T 2wfg_A 110 APYAVNKNLRVLPMETVLATKGTGVVTCVPSDSPDDFVTTRDLANKPEYYGIEKDWVQTDIVPIVHTEKYGDKCAEFLVN 189 (261)
T ss_dssp CTTCSSCSEEEEECTTCCTTSTTSCEEECTTTCHHHHHHHHHHHHSTTTTTCCGGGCCCCCCCCEEBTTTBTCHHHHHHH
T ss_pred CCCCCCceeEEEeeccccCCCCCCeeEEcCCCCHHHHHHHHHhhcchhhcCCccccccCCceeEEcCcccCccchhhhhc
Confidence 9998 5799999999999999999999999999999999999 99 89999998631 21110
Q ss_pred ----------------ccccccc---cceEEcccCcccccccCCCCHHHHHHHHHHHHHHcCCCcceecc
Q 002217 438 ----------------SEKAYTG---EGLIVNSSNLISGLDINGLSCQEATSKVIEWAEKTGNGKKKVNY 488 (952)
Q Consensus 438 ----------------~~~~y~~---~g~l~~~~~~~~~~~~~gl~~~~a~~~ii~~l~~~~~~~~~~~~ 488 (952)
...+|.. .|.|. + ..++|+.+.+|++.|+++|++.|.+....++
T Consensus 190 ~~~i~s~~d~~~l~~a~~~~y~~G~~~g~~~-~------g~f~Gl~v~eA~~~Ii~~L~~~G~~~~~~~~ 252 (261)
T 2wfg_A 190 DLKIQSPKDSVQLANAKELAYKEGFYNGTML-I------GKYKGDKVEDAKPKVKQDLIDEGLAFVYNEP 252 (261)
T ss_dssp HTTCCSTTCHHHHHHHHHHHHHHHHHHCEEC-S------STTTTSBHHHHHHHHHHHHHHTTSEEEECC-
T ss_pred cccccccchhhhhhhhhhhhhhcccccceEe-c------cccCCeEHHHHHHHHHHHHHHCCCeeeeeee
Confidence 0112221 24443 3 2599999999999999999999988766544
No 26
>3pz6_A Leurs, leucyl-tRNA synthetase; editing domain, glleurs_CP1, ligase; 2.60A {Giardia intestinalis}
Probab=99.93 E-value=9.3e-27 Score=247.51 Aligned_cols=171 Identities=17% Similarity=0.158 Sum_probs=124.1
Q ss_pred CcEEEEecCCcchhccccEEEECCCCccchhhccc-cchHHHHHHHHHHhccchh------hHhhhhhcccccccceEEe
Q 002217 306 DIKITVYTTRPDTIFGATYLVVAPEHPLLSSLVST-TQSQNIEEYKNLASRKSDL------ERTELQKEKTGVFSGCYAR 378 (952)
Q Consensus 306 ~~~i~i~TT~P~Tl~g~~~v~v~p~~~y~~~~~~~-~~~~~~~~y~~~~~~~~~~------~~~~~~~~~~~~l~g~~~~ 378 (952)
+.+++||||||||||||+||||||+..|+.+.+.. +.-...++........... +...+...++..|.|.++.
T Consensus 79 ~v~lvIWTTTPWTLPgNtAiaVnPd~~Yv~v~~~~ge~~IvAe~l~e~l~~q~~~~~~~~~~~~vl~~~kG~eL~G~~~~ 158 (311)
T 3pz6_A 79 KVYLLAATLRPETMVGQTNCWVLPTGRYGAYYINKDEVIIVSEHAAVNMAHQGLNNNKPFGELDFISEISGSDLLLATVR 158 (311)
T ss_dssp EEEEEEEESCGGGGGGCCEEEECTTCEEEEEEEETTEEEEEEHHHHHHHHTTTCSSSCCTTCCCEEEEEEHHHHTTCEEE
T ss_pred CEEEEEEECCchhhhhheEEEECCCCcEEEEEECCCCEEEEeHHHHHHHHHhcccccccCCCcEEEEEEEhHHhcCCEEE
Confidence 57999999999999999999999999998776532 1110011111111111000 0012334456679999999
Q ss_pred cCCCCC-cccEEecCcccCCCCCCceEecCCCChhhHHHHH-----------HcCC---------ceeeeecCCC-CCC-
Q 002217 379 NPASGE-AIPIWVADYVLGSYGTGAIMAVPAHDTRDHEFAL-----------KFDI---------SIHSVVMPDD-ESS- 435 (952)
Q Consensus 379 ~P~~~~-~~pv~~~~~V~~~~GTG~V~~~Pah~~~D~~~~~-----------~~~L---------~i~~vv~~~~-~~~- 435 (952)
||++++ .+||++++||++++|||+||+|||||++||++++ +||| +++.+|+..+ |.+
T Consensus 159 hPl~~~~~ipIl~ad~Vt~d~GTGiVh~aPaHg~dDy~~~~d~Lk~k~~~~~Kygi~~e~v~~~~e~ipvI~~~g~G~~~ 238 (311)
T 3pz6_A 159 APLSPYEQIFVLPLETIKMDKGTGIVTSVPSDAPDDYACYKDILENRNGIAEKYGVDVGLMLEPYSPLPIIEIPDIGTLS 238 (311)
T ss_dssp CTTCSSSCEEEEECTTCCTTSTTSEEEECTTTCHHHHHHHHHHHTTGGGHHHHTTCCHHHHTTTSCCCCCEEBTTTBSSH
T ss_pred CCCCCCCeeEEEecCcCccCCCcceEEeCCCCCHHHHHHHHHHhhccHHHHHHcCCchHHhccCCCeEEEEecCCCCCcc
Confidence 999997 9999999999999999999999999999999554 4885 7778887432 221
Q ss_pred -------------cc-------ccccccc---cceEEcccCcccccccCCCCHHHHHHHHHHHHHHcCCCc
Q 002217 436 -------------SQ-------SEKAYTG---EGLIVNSSNLISGLDINGLSCQEATSKVIEWAEKTGNGK 483 (952)
Q Consensus 436 -------------~~-------~~~~y~~---~g~l~~~~~~~~~~~~~gl~~~~a~~~ii~~l~~~~~~~ 483 (952)
.+ +..+|.. +|+|+ +. .++|+++++|+++|+++|.+.|.+.
T Consensus 239 A~~~ve~~~I~sq~D~~kLeeA~~~~Y~~ef~~Gvm~-~g------~~~G~~V~eAk~~i~~~L~~~g~a~ 302 (311)
T 3pz6_A 239 AVRLCEESNVSSLHDRAKLTQIKEICYTKGFYTGIMK-MG------PFAGQSVKDCKQSCRDLLVQNNQCI 302 (311)
T ss_dssp HHHHHHHTTC----CHHHHHHHHHHHHHHHHHHCEEC-SS------TTTTSBHHHHHHHHHHHHHHTTCEE
T ss_pred HHHHHHHhCCCCcchHHHHHHHHHHHHhccCCCCEEe-ee------ccCCeEHHHHHHHHHHHHHHCCCce
Confidence 01 2246763 69997 43 4999999999999999999998754
No 27
>3fnr_A Arginyl-tRNA synthetase; transferase, PSI-2, NYSGXRC, struc genomics, protein structure initiative; 2.20A {Campylobacter jejuni}
Probab=99.88 E-value=2.9e-21 Score=222.97 Aligned_cols=121 Identities=17% Similarity=0.154 Sum_probs=83.4
Q ss_pred ccccccCCCCCCChhhHHhhhCchhhhhhhhhcCCCCCCCCCChhhHHH------------HHHHHHHHHHHHhccCCCC
Q 002217 707 AHKMSKSRGNVVNPDDVVTEYGADSLRLYEMFMGPFRDSKTWNTSGIEG------------VHRFLGRMWRLIVGSSLPD 774 (952)
Q Consensus 707 g~KMSKSkGNvV~P~eii~~YGaDalRl~ll~~~~~~~~~~~s~~~i~~------------~~r~l~~l~~~~~~~~~~~ 774 (952)
+.|||||+||+|+|.+++++||+|++|||+++. .+..+.+|+.+.+.. +++.+..+.+... ...
T Consensus 283 ~~KMSKr~Gn~v~l~dll~~~g~dalRy~~l~~-~~~~d~~Fd~~~~~~~~n~npv~YlqYa~aRi~silrk~~---~~~ 358 (464)
T 3fnr_A 283 PYKMSKRAGNFILMSDVVDEIGSDALRYIFLSK-KCDTHLEFDISDLQKEDSSNPVYYINYAHARIHQVFAKAG---KKI 358 (464)
T ss_dssp ECCC---CCSSCBHHHHHHHHCHHHHHHHTTSS-CTTSCEEEEGGGGGCCSTTSHHHHHHHHHHHHHHHHHHTT---CCT
T ss_pred ccCCcCcCCCCCCHHHHHhhccHHHHHHHHHhc-CCCCCCccCHHHHHHHhCCCHHHHHHHHHHHHHHHHHHhh---ccC
Confidence 369999999999999999999999999999965 556777777665532 2233333333321 100
Q ss_pred CCCCCCccCCCCCChHHHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHhcccc
Q 002217 775 GTFKGGTVVNDEEPTLEQLCTLHKCIAKVTEEIEGTRFNTGISAMMEFINAAYKWEK 831 (952)
Q Consensus 775 ~~~~~~~~~~~~~~d~~~l~~l~~~i~~v~~~~e~~~f~~ai~~l~~f~~~~~~~~~ 831 (952)
.............++.+++.++.++.+.+.+++++|+++.++..+++|+..+++|+.
T Consensus 359 ~~~~~~~~~~L~~~e~~Ll~~L~~~~~~v~~a~~~~ep~~i~~yL~~La~~~n~fY~ 415 (464)
T 3fnr_A 359 DDVMKADLQSLNQDGVNLLFEALNLKAVLNDAFEARALQKIPDYLKNLAANFHKFYN 415 (464)
T ss_dssp TTSTTCCCTTCCHHHHHHHHHHHTHHHHHHHHHHHTCTTHHHHHHHHHHHHHHHHHH
T ss_pred CCccccChhhCChHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHH
Confidence 111100011112237778899999999999999999999999999999999988763
No 28
>1irx_A Lysyl-tRNA synthetase; beta sandwitch, zinc-binding structure, rossmann fold, alpha-helix CAGE; 2.60A {Pyrococcus horikoshii} SCOP: a.97.1.2 c.26.1.1
Probab=99.88 E-value=1.2e-23 Score=248.76 Aligned_cols=115 Identities=20% Similarity=0.231 Sum_probs=96.2
Q ss_pred cEEEEcCCCCCCCCCCCCchhHHHHHHHHHHHHHHHcCCcccccccccccC--hHH---HHHHHHh--CCCc--------
Q 002217 95 KFYVLDMFPYPSGAGLHVGHPLGYTATDILARLKRMQGYNVLHPMGWDAFG--LPA---EQYAIET--GTHP-------- 159 (952)
Q Consensus 95 kf~i~~~~Pypng~~lHiGH~~~~~~~Di~~Ry~r~~G~~V~~~~G~D~~G--lpi---e~~a~~~--g~~~-------- 159 (952)
+.|++.+.|+|||. |||||+|+++..|+++||++++|++|.|+.++|++| -+| ...|.+. |.++
T Consensus 20 ~~yv~~tgPsPtG~-lHIGhaR~al~~D~laR~l~~~g~~v~fi~~idD~d~~rkip~~~~~a~~~~~G~~~~~~p~p~~ 98 (523)
T 1irx_A 20 EKYVVESGITPSGY-VHVGNFRELFTAYIVGHALRDKGYEVRHIHMWDDYDRFRKVPRNVPQEWKDYLGMPISEVPDPWG 98 (523)
T ss_dssp SEEEEEEEECCSSC-CCHHHHHHHHHHHHHHHHHHTTTCEEEEEEEECTTSBCCCCCSSSCGGGGGGTTSBGGGSCCTTS
T ss_pred CeEEECCCCCCCCC-cccCCcHHHHHHHHHHHHHHHcCCCEEEEEeeCCcchhhhhhhHHHHHHHHHcCCCcccCCcchh
Confidence 35677778999998 999999999999999999999999999999999999 444 3334444 7776
Q ss_pred --hHHHHHHHHHHHHHHHHcCCccccCCcccCCChhHHH-HHHHHHHHHHHCC-ceeee
Q 002217 160 --KITTLRNINRFRTQLKSLGFSYDWNREISTIEPAYYK-WTQWIFLQLLKRG-LAYQA 214 (952)
Q Consensus 160 --~~~~~~~~~~~~~~l~~lgi~~Dw~~~~~T~~~~~~~-~v~~~f~~L~~kG-liy~~ 214 (952)
+++++++.+.|++.|+.|||.+| .+ ++++. |.. .+++++.+|.++| .||.-
T Consensus 99 ~~~~~~~~~~~~~~~~l~~Lgi~~D--~~-~~se~-~~~g~~~~~i~~L~~~G~~iy~~ 153 (523)
T 1irx_A 99 CHESYAEHFMRKFEEEVEKLGIEVD--LL-YASEL-YKRGEYSEEIRLAFEKRDKIMEI 153 (523)
T ss_dssp SSSSHHHHHHHHHHHHHHTTTCCCE--EE-EHHHH-HHTTTTHHHHHHHHHTHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHcCCCce--EE-echhh-ccchHHHHHHHHHHHchHHHHHH
Confidence 88999999999999999999766 44 44332 777 8899999999999 77753
No 29
>1iq0_A Arginyl-tRNA synthetase; riken structural genomics/proteomics initiative, RSGI, structural genomics, ligase; 2.30A {Thermus thermophilus} SCOP: a.27.1.1 c.26.1.1 d.67.2.1
Probab=99.88 E-value=1.3e-22 Score=242.71 Aligned_cols=115 Identities=22% Similarity=0.169 Sum_probs=94.7
Q ss_pred cEEEEcCCCCCCCCCCCCchhHHHHHHHHHHHHHHHcCCcccccccccccChHHHH------------------------
Q 002217 95 KFYVLDMFPYPSGAGLHVGHPLGYTATDILARLKRMQGYNVLHPMGWDAFGLPAEQ------------------------ 150 (952)
Q Consensus 95 kf~i~~~~Pypng~~lHiGH~~~~~~~Di~~Ry~r~~G~~V~~~~G~D~~Glpie~------------------------ 150 (952)
+..|.-.-|+|||+ +||||+|+.+++|+++||+|+.||+|.++..+++.|..+-.
T Consensus 104 ~v~ve~~spn~~~~-~HiGH~R~~iigD~laR~l~~~G~~V~~~~~i~D~G~q~~~li~~~~~~g~d~~~~~~~d~~~g~ 182 (592)
T 1iq0_A 104 VVLVEHTSVNPNKE-LHVGHLRNIALGDAIARILAYAGREVLVLNYIDDTGRQAAETLFALRHYGLTWDGKEKYDHFAGR 182 (592)
T ss_dssp EEEEECCCCCTTSC-CBHHHHHHHHHHHHHHHHHHHTTEEEEEEEEECTTSHHHHHHHHHHHHTTCCCCSSSCHHHHHHH
T ss_pred eEEEEeeCCCCCCC-CcchHHHHHHHHHHHHHHHHHcCCceEEEeccCCcchHHHHHHHHHHHhCCcccCCCCcchhHHH
Confidence 45777778999998 99999999999999999999999999997655555532210
Q ss_pred ----------------------HHHHhCCCchHHHHHHHHHHHHHHHHcCCccccCCcccCCChhHHHHHHHHHHHHHHC
Q 002217 151 ----------------------YAIETGTHPKITTLRNINRFRTQLKSLGFSYDWNREISTIEPAYYKWTQWIFLQLLKR 208 (952)
Q Consensus 151 ----------------------~a~~~g~~~~~~~~~~~~~~~~~l~~lgi~~Dw~~~~~T~~~~~~~~v~~~f~~L~~k 208 (952)
.+.+.|. .+++++.+++.|++.+++|||++| .+.+|++..+...+++++.+|.++
T Consensus 183 ~y~~~~~~~~~~~~~~~a~~~~~~~e~g~-~~~~~~~~~~~~~~~~~~LgI~~D--~~~~es~~~~~~~v~~~~~~L~~k 259 (592)
T 1iq0_A 183 AYVRLHQDPEYERLQPAIEEVLHALERGE-LREEVNRILLAQMATMHALNARYD--LLVWESDIVRAGLLQKALALLEQS 259 (592)
T ss_dssp HHHHHHHCTTTGGGHHHHHHHHHHHHTTT-THHHHHHHHHHHHHHHHHTTCCCS--EEEEHHHHHHTTHHHHHHHHHTTS
T ss_pred HHHHHHHHHHhhhHHHHHHHHHHhCCchH-HHHHHHHHHHHHHHHHHHcCCEeE--EeccCCcccccchHHHHHHHHHHC
Confidence 1133454 488899999999999999999887 677777666688999999999999
Q ss_pred Cceee
Q 002217 209 GLAYQ 213 (952)
Q Consensus 209 Gliy~ 213 (952)
|++|+
T Consensus 260 G~~y~ 264 (592)
T 1iq0_A 260 PHVFR 264 (592)
T ss_dssp TTEEC
T ss_pred CCccc
Confidence 99995
No 30
>2zue_A Arginyl-tRNA synthetase; aminoacyl-tRNA synthetase, ATP-binding, cytoplasm, ligase, nucleotide-binding, protein biosynthesis, ligase/RNA complex; HET: ANP; 2.00A {Pyrococcus horikoshii} PDB: 2zuf_A
Probab=99.86 E-value=7e-21 Score=228.51 Aligned_cols=129 Identities=19% Similarity=0.159 Sum_probs=102.2
Q ss_pred CCcEEEEcCCCCCCCCCCCCchhHHHHHHHHHHHHHHHcCCcccccccccccChHHH-----------------------
Q 002217 93 KPKFYVLDMFPYPSGAGLHVGHPLGYTATDILARLKRMQGYNVLHPMGWDAFGLPAE----------------------- 149 (952)
Q Consensus 93 k~kf~i~~~~Pypng~~lHiGH~~~~~~~Di~~Ry~r~~G~~V~~~~G~D~~Glpie----------------------- 149 (952)
.++..|--.-|+|||+ +||||+|+.+++|+++|+++..||+|.+....+++|.++.
T Consensus 118 ~~~V~ve~~spN~~~~-~HiGH~Rs~iigD~laR~l~~~G~~V~~~~~i~D~G~Q~~~l~~~~~~~g~~~~~~~~~~~~~ 196 (629)
T 2zue_A 118 GKKVIVEHTSVNPTKP-LHMGHARNAILGDVMARILRFLGYEVEVQNYIDDLGIQFAQVYWGYLRLKEEFERIMNELRER 196 (629)
T ss_dssp TCEEEEECCCCCTTSC-CBHHHHHHHHHHHHHHHHHHHTTCEEEEEEEECTTSHHHHHHHHHHHHCHHHHHHHHHHHHHH
T ss_pred CCEEEEEeeCCCCCCC-CccchhHHHHHHHHHHHHHHHcCCCceEEecccchhHHHHHHHHHHHHhCCcchhhhhhhccc
Confidence 3455666668999998 9999999999999999999999999999988888876632
Q ss_pred ----------------HHHHHhC--------------------CCchHHHHHHHHHHHHHHHHcCCccccCCcccCCChh
Q 002217 150 ----------------QYAIETG--------------------THPKITTLRNINRFRTQLKSLGFSYDWNREISTIEPA 193 (952)
Q Consensus 150 ----------------~~a~~~g--------------------~~~~~~~~~~~~~~~~~l~~lgi~~Dw~~~~~T~~~~ 193 (952)
..+++.+ ...+++++...+.|++.+++|||++| .+..+++..
T Consensus 197 ~~~~~~~d~~~g~~y~~~a~~~~~~~~~~~~~~~~~~~~e~gd~~~~~~~~~~~~~f~~~~~~L~I~~D--~~~~es~~~ 274 (629)
T 2zue_A 197 GLKDNPIDHALGLLYVEVNRRLEDNPELENEIRDIMKKLESGELYGRKLAEEVVRAQMVTTYKLGVKYD--LLVWESDIV 274 (629)
T ss_dssp TSCSCCHHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHSSSCCHHHHHHHHHHHHHHHHHHTCCCS--EEEEHHHHH
T ss_pred ccccCcchhhHHHHHHHHHHHHhcCchHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHHHHcCCccc--cccCcCccc
Confidence 1222222 23367888999999999999999987 777887766
Q ss_pred HHHHHHHHHHHHHHCCceee---eccccccCCCC
Q 002217 194 YYKWTQWIFLQLLKRGLAYQ---AEVPVNWCPAL 224 (952)
Q Consensus 194 ~~~~v~~~f~~L~~kGliy~---~~~~v~wc~~~ 224 (952)
+...++.++.+|.++|++|+ +.....||..|
T Consensus 275 ~~~~v~~vi~~L~~kG~~y~~~~ge~~Ga~~v~~ 308 (629)
T 2zue_A 275 RRKLFEIALELLSKNENFYIPSDGKYRGAFVMDL 308 (629)
T ss_dssp HTTHHHHHHHHHHTSTTEECCSSSTTTTCEEEEC
T ss_pred cchhHHHHHHHHHHCCCccccccCCcCCcEEEEC
Confidence 68899999999999999994 44444455444
No 31
>1f7u_A Arginyl-tRNA synthetase; RNA-protein complex, aminoacylation; HET: PSU 1MG 2MG H2U M2G 5MC 5MU 1MA ARG; 2.20A {Saccharomyces cerevisiae} SCOP: a.27.1.1 c.26.1.1 d.67.2.1 PDB: 1bs2_A* 1f7v_A*
Probab=99.60 E-value=7.4e-14 Score=166.46 Aligned_cols=117 Identities=18% Similarity=0.133 Sum_probs=93.3
Q ss_pred CCcEEEEcCCCCCCCCCCCCchhHHHHHHHHHHHHHHHcCCcccccccccccChHHHHH---------------------
Q 002217 93 KPKFYVLDMFPYPSGAGLHVGHPLGYTATDILARLKRMQGYNVLHPMGWDAFGLPAEQY--------------------- 151 (952)
Q Consensus 93 k~kf~i~~~~Pypng~~lHiGH~~~~~~~Di~~Ry~r~~G~~V~~~~G~D~~Glpie~~--------------------- 151 (952)
.++..|--.-|+|+|+ +||||+|+.++.|+++|+++..||+|.+....+++|.++...
T Consensus 142 ~~~V~ve~~spN~~~p-lHvGHlRs~iiGD~laRil~~~G~~V~~~~~i~D~G~Q~~~l~~~~~~~g~~~~~~~~~i~~l 220 (607)
T 1f7u_A 142 NKKVIIEFSSPNIAKP-FHAGHLRSTIIGGFLANLYEKLGWEVIRMNYLGDWGKQFGLLAVGFERYGNEEALVKDPIHHL 220 (607)
T ss_dssp CCEEEEECCCCBTTSC-CBGGGHHHHHHHHHHHHHHHHTTCEEEEEEEEBCCSHHHHHHHHHHHHHCCHHHHHHCHHHHH
T ss_pred CCeEEEEecCCCCCCC-CccchHHHHHHHHHHHHHHHHcCCCeeEEEeecCcchHHHHHHHHHHHhCchhhccCCChHHH
Confidence 4456666668999998 999999999999999999999999999999988887765211
Q ss_pred ---------------------------HHH------hCCC-----chHHHHHHHHHHHHHHHHcCCccccCCcccCCChh
Q 002217 152 ---------------------------AIE------TGTH-----PKITTLRNINRFRTQLKSLGFSYDWNREISTIEPA 193 (952)
Q Consensus 152 ---------------------------a~~------~g~~-----~~~~~~~~~~~~~~~l~~lgi~~Dw~~~~~T~~~~ 193 (952)
|.+ .|.+ .+++++..++.|++.+++|||.+| .+...+ .
T Consensus 221 ~~~Y~~~~~~~~~~~e~g~~~~~i~~~A~~~~~~le~gd~e~~~~w~~~~~~~~~~~~~~~~~L~V~fD--~~~~ES--~ 296 (607)
T 1f7u_A 221 FDVYVRINKDIEEEGDSIPLEQSTNGKAREYFKRMEDGDEEALKIWKRFREFSIEKYIDTYARLNIKYD--VYSGES--Q 296 (607)
T ss_dssp HHHHHHHHHHHHHSTTSSCHHHHSSHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHHHHHTTCCCS--EEEEGG--G
T ss_pred HHHHHHHHHHhhhccccccccHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHHHHHHHHcCCcce--eecCcc--h
Confidence 222 2433 356788888999999999999987 444443 3
Q ss_pred HH-HHHHHHHHHHHHCCceeee
Q 002217 194 YY-KWTQWIFLQLLKRGLAYQA 214 (952)
Q Consensus 194 ~~-~~v~~~f~~L~~kGliy~~ 214 (952)
|. ..+..++..|.++|++|+.
T Consensus 297 ~~~~~~~~vi~~L~~kG~~ye~ 318 (607)
T 1f7u_A 297 VSKESMLKAIDLFKEKGLTHED 318 (607)
T ss_dssp CCHHHHHHHHHHHHHTTCEEEE
T ss_pred hhhhHHHHHHHHHHhCCCEEEE
Confidence 44 6789999999999999985
No 32
>1nzj_A Hypothetical protein YADB; Zn cluster, glutamyl T-RNA synthetase, structural genomics, unknown function; 1.50A {Escherichia coli} SCOP: c.26.1.1 PDB: 2zlz_A* 4a91_A*
Probab=97.96 E-value=6.8e-06 Score=89.42 Aligned_cols=89 Identities=18% Similarity=0.237 Sum_probs=70.0
Q ss_pred CCCCCCCCCCCchhHHHHHHHHHHHHHHHcCCcccccccccccChHHHHHHHHhCCCchHHHHHHHHHHHHHHHHcCCcc
Q 002217 102 FPYPSGAGLHVGHPLGYTATDILARLKRMQGYNVLHPMGWDAFGLPAEQYAIETGTHPKITTLRNINRFRTQLKSLGFSY 181 (952)
Q Consensus 102 ~Pypng~~lHiGH~~~~~~~Di~~Ry~r~~G~~V~~~~G~D~~Glpie~~a~~~g~~~~~~~~~~~~~~~~~l~~lgi~~ 181 (952)
+|.|+|. |||||+++.+ .+|...+++.+.|+.-+|+...+ .....+.+.|.++|+.||+
T Consensus 11 APsPtG~-LHiG~~rtal-----~n~l~Ar~~~g~~ilRieDtD~~-------------R~~~~~~~~I~~dL~~LGl-- 69 (298)
T 1nzj_A 11 APSPSGE-LHFGSLIAAL-----GSYLQARARQGRWLVRIEDIDPP-------------REVPGAAETILRQLEHYGL-- 69 (298)
T ss_dssp CCCTTSC-CCHHHHHHHH-----HHHHHHHHTTCEEEEEECCSCGG-------------GSCTTHHHHHHHHHHHTTC--
T ss_pred CcCCCCC-ccHHHHHHHH-----HHHHHHHhcCCeEEEEEecCCch-------------hhHHHHHHHHHHHHHHcCC--
Confidence 7999998 9999999987 55666667778888888886543 1225678999999999999
Q ss_pred ccCC--cccCCChhHHHHHHHHHHHHHHCCceeee
Q 002217 182 DWNR--EISTIEPAYYKWTQWIFLQLLKRGLAYQA 214 (952)
Q Consensus 182 Dw~~--~~~T~~~~~~~~v~~~f~~L~~kGliy~~ 214 (952)
+|+. ++.+ ++....+.+..+|.++|++|.-
T Consensus 70 ~~D~~~~~qS---er~~~y~~~~~~L~~~G~aY~c 101 (298)
T 1nzj_A 70 HWDGDVLWQS---QRHDAYREALAWLHEQGLSYYC 101 (298)
T ss_dssp CCSSCCEEGG---GCHHHHHHHHHHHHHTTCEEEE
T ss_pred CCCCCCeeee---CCHHHHHHHHHHHHHcCCcccC
Confidence 5555 3444 5667888999999999999963
No 33
>3aii_A Glutamyl-tRNA synthetase; amino-acyl tRNA synthetase, ligase; 1.65A {Methanothermobacter thermautotrophicusorganism_taxid}
Probab=97.95 E-value=1e-05 Score=94.02 Aligned_cols=93 Identities=25% Similarity=0.345 Sum_probs=72.9
Q ss_pred EEcCCCCCCCCCCCCchhHHHHHHHHHHHHHHHcCCcccccccccccChHHHHHHHHhCCCchHHHHHHHHHHHHHHHHc
Q 002217 98 VLDMFPYPSGAGLHVGHPLGYTATDILARLKRMQGYNVLHPMGWDAFGLPAEQYAIETGTHPKITTLRNINRFRTQLKSL 177 (952)
Q Consensus 98 i~~~~Pypng~~lHiGH~~~~~~~Di~~Ry~r~~G~~V~~~~G~D~~Glpie~~a~~~g~~~~~~~~~~~~~~~~~l~~l 177 (952)
++==+|.|||. |||||+++.++...++| +|.+.++.-+|+...+ ....++++.|.++|+.|
T Consensus 98 ~tRFaPsPtG~-LHIGhaRtal~n~l~Ar-----~~~G~~iLRieDtD~~-------------R~~~e~~~~I~edL~wL 158 (553)
T 3aii_A 98 VLRFAPNPSGP-LHIGHARAAILNHEYAR-----KYDGRLILRIEDTDPR-------------RVDPEAYDMIPADLEWL 158 (553)
T ss_dssp EEEECCCSSSS-CBHHHHHHHHHHHHHHH-----HTTCEEEEEECCCCGG-------------GCCTTHHHHHHHHHHHH
T ss_pred EEEeCCCCCCC-ccHHHHHHHHHHHHHHH-----HcCCEEEEEECcCCcc-------------cccHHHHHHHHHHHHHc
Confidence 44448999998 99999999988655554 6788888899988643 11446789999999999
Q ss_pred CCccccCCcccCCChhHHHHHHHHHHHHHHCCceee
Q 002217 178 GFSYDWNREISTIEPAYYKWTQWIFLQLLKRGLAYQ 213 (952)
Q Consensus 178 gi~~Dw~~~~~T~~~~~~~~v~~~f~~L~~kGliy~ 213 (952)
|+ +|+..+ ...+|......+..+|.++|++|.
T Consensus 159 Gl--~wd~~~--~qSdr~~~y~~~~~~Li~~G~AY~ 190 (553)
T 3aii_A 159 GV--EWDETV--IQSDRMETYYEYTEKLIERGGAYV 190 (553)
T ss_dssp TC--CCSEEE--EGGGGHHHHHHHHHHHHHTTSEEE
T ss_pred CC--CCCCCc--ccccCHHHHHHHHHHHHHcCCcee
Confidence 99 554433 334788888999999999999997
No 34
>1qtq_A GLNRS, protein (glutaminyl-tRNA synthetase); glutamine, trnaGln, E. coli, complex, ligase/RNA complex; HET: QSI; 2.25A {Escherichia coli} SCOP: b.53.1.2 c.26.1.1 PDB: 1gsg_P* 1gts_A* 1gtr_A* 1zjw_A* 1o0b_A* 1o0c_A* 1qru_A* 1qrs_A* 1qrt_A* 1euy_A* 1euq_A* 1exd_A* 2rd2_A* 2re8_A* 1nyl_A
Probab=97.91 E-value=1.3e-05 Score=93.11 Aligned_cols=94 Identities=22% Similarity=0.380 Sum_probs=70.7
Q ss_pred EEcCCCCCCCCCCCCchhHHHHHHHHHHHHHHHcCCcccccccccccChHHHHHHHHhCCCchHHHHHHHHHHHHHHHHc
Q 002217 98 VLDMFPYPSGAGLHVGHPLGYTATDILARLKRMQGYNVLHPMGWDAFGLPAEQYAIETGTHPKITTLRNINRFRTQLKSL 177 (952)
Q Consensus 98 i~~~~Pypng~~lHiGH~~~~~~~Di~~Ry~r~~G~~V~~~~G~D~~Glpie~~a~~~g~~~~~~~~~~~~~~~~~l~~l 177 (952)
++==+|.|||. ||||||++.++...++| +|...|+.-+|+... ...+.++.+.|.++|+.|
T Consensus 28 ~tRFaPSPtG~-LHIGhaRtal~n~l~Ar-----~~gG~fiLRieDTD~-------------~R~~~e~~~~I~edL~wL 88 (553)
T 1qtq_A 28 HTRFPPEPNGY-LHIGHAKSICLNFGIAQ-----DYKGQCNLRFDDTNP-------------VKEDIEYVESIKNDVEWL 88 (553)
T ss_dssp EEEECCCTTSC-CBHHHHHHHHHHHHHHH-----HTTCEEEEEECCCCG-------------GGCCHHHHHHHHHHHHHT
T ss_pred EEEeCCCCCCC-ccHHHHHHHHHHHHHHH-----HcCCEEEEEECCCCc-------------hhcCHHHHHHHHHHHHHc
Confidence 33348999998 99999999988777766 566677778887753 123557889999999999
Q ss_pred CCccccCCcccCCChhHHHHHHHHHHHHHHCCceee
Q 002217 178 GFSYDWNREISTIEPAYYKWTQWIFLQLLKRGLAYQ 213 (952)
Q Consensus 178 gi~~Dw~~~~~T~~~~~~~~v~~~f~~L~~kGliy~ 213 (952)
|+..|-..++.| +|.........+|.++|++|.
T Consensus 89 Gl~wde~~~~qS---er~~~~~~~a~~Li~~G~AY~ 121 (553)
T 1qtq_A 89 GFHWSGNVRYSS---DYFDQLHAYAIELINKGLAYV 121 (553)
T ss_dssp TCCCSSSCEEGG---GGHHHHHHHHHHHHHTTSEEE
T ss_pred CCCCCCCCeehc---ccHHHHHHHHHHHHHCCCcee
Confidence 995543333344 666666677789999999997
No 35
>2hz7_A Glutaminyl-tRNA synthetase; rossmann fold, GLNRS core, class I aminoacyl-tRNA synthetase, ligase; 2.30A {Deinococcus radiodurans}
Probab=97.72 E-value=3.1e-05 Score=93.93 Aligned_cols=95 Identities=23% Similarity=0.275 Sum_probs=73.5
Q ss_pred EEEcCCCCCCCCCCCCchhHHHHHHHHHHHHHHHcCCcccccccccccChHHHHHHHHhCCCchHHHHHHHHHHHHHHHH
Q 002217 97 YVLDMFPYPSGAGLHVGHPLGYTATDILARLKRMQGYNVLHPMGWDAFGLPAEQYAIETGTHPKITTLRNINRFRTQLKS 176 (952)
Q Consensus 97 ~i~~~~Pypng~~lHiGH~~~~~~~Di~~Ry~r~~G~~V~~~~G~D~~Glpie~~a~~~g~~~~~~~~~~~~~~~~~l~~ 176 (952)
+++==+|.|||. |||||+++.++...++| +|...|+.-+|+.... ....++++.|.++|+.
T Consensus 67 v~tRFaPSPtG~-LHIGhARtAL~n~l~Ar-----~~gG~fiLRIEDTD~~-------------R~~~e~~~~IledL~w 127 (851)
T 2hz7_A 67 VVTRFPPDPSGY-AHLGHVFASLLDFNTAR-----QYGGQFNLRMDDTNPE-------------LARQEYVDSIADDLKW 127 (851)
T ss_dssp CEEEECCCSSSC-CBHHHHHHHHHHHHHHH-----HTTCEEEEEECCCCTT-------------TCCHHHHHHHHHHHHH
T ss_pred eEEEeCCCCCCC-ccHHHHHHHHHHHHHHH-----HcCCEEEEEECcCCcc-------------cccHHHHHHHHHHHHH
Confidence 344448999998 99999999988665555 5777888888887642 1255788999999999
Q ss_pred cCCccccCCcccCCChhHHHHHHHHHHHHHHCCceee
Q 002217 177 LGFSYDWNREISTIEPAYYKWTQWIFLQLLKRGLAYQ 213 (952)
Q Consensus 177 lgi~~Dw~~~~~T~~~~~~~~v~~~f~~L~~kGliy~ 213 (952)
||+..|-..++.| +|......+..+|.++|++|.
T Consensus 128 LGl~wde~~~~qS---er~d~y~e~a~~LI~~G~AY~ 161 (851)
T 2hz7_A 128 LGLDWGEHFYYAS---DYFDRYYAYAEQLIRQGDAYV 161 (851)
T ss_dssp HTCCCTTCEEEGG---GGHHHHHHHHHHHHHTTSEEE
T ss_pred cCCCCCCCcccHh---hhHHHHHHHHHHHHHCCCcEe
Confidence 9995442233344 788888999999999999997
No 36
>2o5r_A Glutamyl-tRNA synthetase 1; TM1351, EC 6.1.1.17, glutamate-T ligase 1, glurs 1, structural genomics, joint center for ST genomics, JCSG; 2.34A {Thermotoga maritima}
Probab=97.68 E-value=4.9e-05 Score=88.14 Aligned_cols=97 Identities=21% Similarity=0.236 Sum_probs=70.9
Q ss_pred EEEEcCCCCCCCCCCCCchhHHHHHHHHHHHHHHHcCCcccccccccccChHHHHHHHHhCCCchHHHHHHHHHHHHHHH
Q 002217 96 FYVLDMFPYPSGAGLHVGHPLGYTATDILARLKRMQGYNVLHPMGWDAFGLPAEQYAIETGTHPKITTLRNINRFRTQLK 175 (952)
Q Consensus 96 f~i~~~~Pypng~~lHiGH~~~~~~~Di~~Ry~r~~G~~V~~~~G~D~~Glpie~~a~~~g~~~~~~~~~~~~~~~~~l~ 175 (952)
++++--.|.|+|. |||||+++.++.|++||. ..|.-++.+ |+.+ +......+.+.+.+.|+
T Consensus 13 vv~~RfaPsPTG~-LHiG~aRtAl~n~~~Ar~--~~G~~iLRi---eDtD-------------~~r~~~~~~~~I~~~l~ 73 (481)
T 2o5r_A 13 MVRVRFAPSPTGF-LHVGGARTALFNFLFARK--EKGKFILRI---EDTD-------------LERSEREYEEKLMESLR 73 (481)
T ss_dssp CCEEEECCCCCSC-CBHHHHHHHHHHHHHHHH--HTCEEEECB---CCSS-------------CCSGGGHHHHHHHHHHH
T ss_pred EEEEEECCCCCCC-cCHHHHHHHHHHHHHHHH--cCCeEEEEE---ecCC-------------ccccHHHHHHHHHHHHH
Confidence 4444458999998 999999999999999998 688777664 3333 12233456777889999
Q ss_pred HcCCccccCCcc-------cCCChhHHHHHHHHHHHHHHCCceee
Q 002217 176 SLGFSYDWNREI-------STIEPAYYKWTQWIFLQLLKRGLAYQ 213 (952)
Q Consensus 176 ~lgi~~Dw~~~~-------~T~~~~~~~~v~~~f~~L~~kGliy~ 213 (952)
.||+ +|+..- .....++....+.+..+|.++|.+|.
T Consensus 74 wlGl--~~de~p~~gg~~g~y~QS~r~~~y~~~a~~L~~~G~aY~ 116 (481)
T 2o5r_A 74 WLGL--LWDEGPDVGGDHGPYRQSERVEIYREHAERLVKEGKAYY 116 (481)
T ss_dssp HHTC--CCSBBTTTBCTTCCCBGGGGHHHHHHHHHHHHHTTSEEE
T ss_pred HcCC--CCCCCcccCCCCCceeeeccHHHHHHHHHHHHHCCCeeE
Confidence 9999 565520 01133566777888999999999984
No 37
>3al0_C Glutamyl-tRNA(Gln) amidotransferase subunit C, GL tRNA synthetase 2; protein-RNA complex, ligase-RNA complex; HET: GSU; 3.37A {Thermotoga maritima}
Probab=97.61 E-value=6.7e-05 Score=88.90 Aligned_cols=92 Identities=20% Similarity=0.243 Sum_probs=68.9
Q ss_pred cCCCCCCCCCCCCchhHHHHHHHHHHHHHHHcCCcccccccccccChHHHHHHHHhCCCchHHHHHHHHHHHHHHHHcCC
Q 002217 100 DMFPYPSGAGLHVGHPLGYTATDILARLKRMQGYNVLHPMGWDAFGLPAEQYAIETGTHPKITTLRNINRFRTQLKSLGF 179 (952)
Q Consensus 100 ~~~Pypng~~lHiGH~~~~~~~Di~~Ry~r~~G~~V~~~~G~D~~Glpie~~a~~~g~~~~~~~~~~~~~~~~~l~~lgi 179 (952)
-=+|.|+|. |||||+++.++.+.+||. ..|.-++.+ |+. ++......+.+.+.++|+.||+
T Consensus 133 RFaPsPTG~-LHiG~artAl~n~l~Ar~--~~G~~ilRi---eDt-------------D~~r~~~~~~~~I~~dL~wlGl 193 (592)
T 3al0_C 133 RFAPSPTGH-LHVGGARTALFNWMFARK--EGGKFILRI---EDT-------------DTERSSREYEQQILESLRWCGL 193 (592)
T ss_dssp EECCCSSSC-CBHHHHHHHHHHHHHHHH--HTCEEEECB---CCC-------------CSSSCCHHHHHHHHHHHHHTTC
T ss_pred EECCCCCCC-ccHHHHHHHHHHHHHHHh--cCCcEEEEe---cCc-------------ChhhccHHHHHHHHHHHHHcCC
Confidence 335999998 999999999999999986 456555544 332 2223355778899999999999
Q ss_pred ccccCCc---------ccCCChhHHHHHHHHHHHHHHCCceeee
Q 002217 180 SYDWNRE---------ISTIEPAYYKWTQWIFLQLLKRGLAYQA 214 (952)
Q Consensus 180 ~~Dw~~~---------~~T~~~~~~~~v~~~f~~L~~kGliy~~ 214 (952)
+|+.. |+. .++....+....+|.++|++|.-
T Consensus 194 --~~D~~~~~gG~~gp~~q--Ser~~~y~~~~~~L~~~G~aY~c 233 (592)
T 3al0_C 194 --DWDEGPDIGGDFGPYRQ--SERLEIYREYAEKLVEDKRAYYV 233 (592)
T ss_dssp --CCSBBTTTBCTTCCCBS--TTCHHHHHHHHHHHHHTTTEEEE
T ss_pred --CCCCCCCcCCCCCCeee--eCCHHHHHHHHHHHHHcCCceEe
Confidence 56663 232 24556778899999999999974
No 38
>2cfo_A Glutamyl-tRNA synthetase; ligase, aminoacyl-tRNA synthetase, ATP-binding, nucleotide-B; HET: GLU; 2.45A {Synechococcus elongatus}
Probab=97.61 E-value=4.8e-05 Score=88.31 Aligned_cols=88 Identities=18% Similarity=0.247 Sum_probs=68.2
Q ss_pred CCCCCCCCCCCchhHHHHHHHHHHHHHHHcCCcccccccccccChHHHHHHHHhCCCchHHHHHHHHHHHHHHHHcCCcc
Q 002217 102 FPYPSGAGLHVGHPLGYTATDILARLKRMQGYNVLHPMGWDAFGLPAEQYAIETGTHPKITTLRNINRFRTQLKSLGFSY 181 (952)
Q Consensus 102 ~Pypng~~lHiGH~~~~~~~Di~~Ry~r~~G~~V~~~~G~D~~Glpie~~a~~~g~~~~~~~~~~~~~~~~~l~~lgi~~ 181 (952)
+|.|+|. |||||+++.+.. |...+++...|+.-+|+... ......+++.|.++|+.||+
T Consensus 7 APSPtG~-lHiG~artal~n-----~l~Ar~~~G~filRieDtD~-------------~R~~~~~~~~i~~dL~wLGl-- 65 (492)
T 2cfo_A 7 APSPTGN-LHIGTARTAVFN-----WLYARHRGGKFILRIEDTDR-------------ERSRPEYTENILEGLQWLGL-- 65 (492)
T ss_dssp CCCTTSC-CBHHHHHHHHHH-----HHHHHHTTCEEEEEECCCSS-------------SSCCHHHHHHHHHHHHHTTC--
T ss_pred CCCCCCC-ccHHHHHHHHHH-----HHHHHhcCCeEEEEEeeCCc-------------cccchHHHHHHHHHHHHcCC--
Confidence 7999998 999999998875 44445567777778887753 11135678999999999999
Q ss_pred ccCC--cccCCChhHHHHHHHHHHHHHHCCceee
Q 002217 182 DWNR--EISTIEPAYYKWTQWIFLQLLKRGLAYQ 213 (952)
Q Consensus 182 Dw~~--~~~T~~~~~~~~v~~~f~~L~~kGliy~ 213 (952)
+|+. ++.| ++...-+.+..+|.++|++|.
T Consensus 66 ~wde~~~~QS---~r~~~y~~~~~~Li~~G~AY~ 96 (492)
T 2cfo_A 66 TWDEGPYFQS---DRLDLYRQAIQTLLDKGLAYY 96 (492)
T ss_dssp CCSEEEEEGG---GCHHHHHHHHHHHHHTTSEEE
T ss_pred CCCCCCcccc---CCHHHHHHHHHHHHHCCCceE
Confidence 6665 3333 666777888999999999997
No 39
>4g6z_A Glutamate-tRNA ligase; aminoacyl-tRNA synthetase, AARS, class 1B AARS, ATP-dependen charging, protein synthesis, structural genomics; HET: GLU; 2.05A {Burkholderia thailandensis}
Probab=97.47 E-value=0.00011 Score=84.67 Aligned_cols=91 Identities=18% Similarity=0.302 Sum_probs=67.5
Q ss_pred CCCCCCCCCCCchhHHHHHHHHHHHHHHHcCCcccccccccccChHHHHHHHHhCCCchHHHHHHHHHHHHHHHHcCCcc
Q 002217 102 FPYPSGAGLHVGHPLGYTATDILARLKRMQGYNVLHPMGWDAFGLPAEQYAIETGTHPKITTLRNINRFRTQLKSLGFSY 181 (952)
Q Consensus 102 ~Pypng~~lHiGH~~~~~~~Di~~Ry~r~~G~~V~~~~G~D~~Glpie~~a~~~g~~~~~~~~~~~~~~~~~l~~lgi~~ 181 (952)
.|.|+|. |||||+++.+...+++|. ..| .|+.-+|+... ......+++.+.++|+.||+
T Consensus 31 APSPTG~-lHiG~~rtal~n~l~Ar~--~~G---~filRieDtD~-------------~R~~~~~~~~i~~dl~wlGl-- 89 (490)
T 4g6z_A 31 APSPTGF-IHLGNIRSALYPWAFARK--MKG---TFVLRIEDTDV-------------ERSSQEAVDAILEGMAWLGL-- 89 (490)
T ss_dssp CCCCCSC-CBHHHHHHHHHHHHHHHH--TTC---EEEEEECCCCG-------------GGCCHHHHHHHHHHHHHTTC--
T ss_pred CCCCCCC-ccHHHHHHHHHHHHHHHh--cCC---eEEEEeCCCCc-------------ccccHHHHHHHHHHHHHcCC--
Confidence 7999998 999999999998888774 244 55555555432 11235788999999999999
Q ss_pred ccCCcccCCChhHHHHHHHHHHHHHHCCceeee
Q 002217 182 DWNREISTIEPAYYKWTQWIFLQLLKRGLAYQA 214 (952)
Q Consensus 182 Dw~~~~~T~~~~~~~~v~~~f~~L~~kGliy~~ 214 (952)
+|+.. .+...++....+.++.+|.++|++|.-
T Consensus 90 ~~d~~-~~~qS~r~~~y~~~~~~Li~~G~aY~C 121 (490)
T 4g6z_A 90 DYDEG-PYYQMQRMDRYREVLAQMQEKGLVYPC 121 (490)
T ss_dssp CCSEE-EEEGGGCHHHHHHHHHHHHHTTSEEEE
T ss_pred CCCCC-CcccccCHHHHHHHHHHHHHCCCEEeC
Confidence 66552 112236777788999999999999864
No 40
>3afh_A Glutamyl-tRNA synthetase 2; protein-substrate complex, aminoacyl-tRNA synthetase, ATP-binding, ligase, nucleotide-binding; HET: GSU; 2.00A {Thermotoga maritima} PDB: 3akz_B*
Probab=97.18 E-value=0.00044 Score=80.09 Aligned_cols=93 Identities=18% Similarity=0.224 Sum_probs=67.4
Q ss_pred EcCCCCCCCCCCCCchhHHHHHHHHHHHHHHHcCCcccccccccccChHHHHHHHHhCCCchHHHHHHHHHHHHHHHHcC
Q 002217 99 LDMFPYPSGAGLHVGHPLGYTATDILARLKRMQGYNVLHPMGWDAFGLPAEQYAIETGTHPKITTLRNINRFRTQLKSLG 178 (952)
Q Consensus 99 ~~~~Pypng~~lHiGH~~~~~~~Di~~Ry~r~~G~~V~~~~G~D~~Glpie~~a~~~g~~~~~~~~~~~~~~~~~l~~lg 178 (952)
+-=+|.|+|. |||||+++.+..-.++|- ..| .|+.=+|+... ......+.+.+.++|+.||
T Consensus 28 ~RFAPsPtG~-LHiG~~rtal~n~l~Ar~--~~G---~filRieDtD~-------------~R~~~~~~~~I~~dL~wlG 88 (488)
T 3afh_A 28 VRFAPSPTGH-LHVGGARTALFNWMFARK--EGG---KFILRIEDTDT-------------ERSSREYEQQILESLRWCG 88 (488)
T ss_dssp EEECCCCSSS-CBHHHHHHHHHHHHHHHH--HTC---EEEECBCCCCT-------------TTCCHHHHHHHHHHHHHTT
T ss_pred EEECCCCCCC-ccHHHHHHHHHHHHHHHH--cCC---EEEEEEeeCCc-------------ccccHHHHHHHHHHHHHcC
Confidence 3347999998 999999999888777664 344 34445555532 2224567888999999999
Q ss_pred CccccCCc---------ccCCChhHHHHHHHHHHHHHHCCceeee
Q 002217 179 FSYDWNRE---------ISTIEPAYYKWTQWIFLQLLKRGLAYQA 214 (952)
Q Consensus 179 i~~Dw~~~---------~~T~~~~~~~~v~~~f~~L~~kGliy~~ 214 (952)
+ ||+.. |+. .++....+....+|.++|++|.-
T Consensus 89 l--~wDe~~~~gG~~gp~~Q--Ser~~~y~~~~~~L~~~G~aY~c 129 (488)
T 3afh_A 89 L--DWDEGPDIGGDFGPYRQ--SERLEIYREYAEKLVEDKRAYYV 129 (488)
T ss_dssp C--CCSBBTTTBCTTCCCBG--GGCHHHHHHHHHHHHHTTSEEEE
T ss_pred C--CCCcCCCCCCCCCCeee--eCCHHHHHHHHHHHHHcCCeEec
Confidence 9 56663 222 25567788899999999999975
No 41
>1j09_A Glutamyl-tRNA synthetase; glurs-ATP-Glu complex, riken structural genomics/proteomics initiative, RSGI, structural genomics, ligase; HET: GLU ATP; 1.80A {Thermus thermophilus} SCOP: a.97.1.1 c.26.1.1 PDB: 1n75_A* 1n77_A* 1n78_A* 2cuz_A* 2cv0_A* 2cv1_A* 2cv2_A* 2dxi_A* 1g59_A 1gln_A
Probab=97.06 E-value=0.00043 Score=79.77 Aligned_cols=92 Identities=25% Similarity=0.211 Sum_probs=66.8
Q ss_pred CCCCCCCCCCCchhHHHHHHHHHHHHHHHcCCcccccccccccChHHHHHHHHhCCCchHHHHHHHHHHHHHHHHcCCcc
Q 002217 102 FPYPSGAGLHVGHPLGYTATDILARLKRMQGYNVLHPMGWDAFGLPAEQYAIETGTHPKITTLRNINRFRTQLKSLGFSY 181 (952)
Q Consensus 102 ~Pypng~~lHiGH~~~~~~~Di~~Ry~r~~G~~V~~~~G~D~~Glpie~~a~~~g~~~~~~~~~~~~~~~~~l~~lgi~~ 181 (952)
+|-|||. |||||+++.++.-.++|- ..| .|+.=+|+...+ .....+.+.+.++|+.||+
T Consensus 7 aPsPtG~-LHiG~~rtal~n~l~Ar~--~~G---~filRieDtD~~-------------R~~~~~~~~I~~dl~wlGl-- 65 (468)
T 1j09_A 7 APSPTGD-PHVGTAYIALFNYAWARR--NGG---RFIVRIEDTDRA-------------RYVPGAEERILAALKWLGL-- 65 (468)
T ss_dssp CCCCSSS-CBHHHHHHHHHHHHHHHH--TTC---EEEECBCCCCTT-------------SCCTTHHHHHHHHHHHTTC--
T ss_pred CCCCCCC-ccHHHHHHHHHHHHHHHH--cCC---EEEEEeCcCCCc-------------ccChHHHHHHHHHHHHcCC--
Confidence 7999998 999999999988777763 344 455556665432 1234567889999999999
Q ss_pred ccCCcc-------cCCChhHHHHHHHHHHHHHHCCceeee
Q 002217 182 DWNREI-------STIEPAYYKWTQWIFLQLLKRGLAYQA 214 (952)
Q Consensus 182 Dw~~~~-------~T~~~~~~~~v~~~f~~L~~kGliy~~ 214 (952)
||+... .....++...-+....+|.++|++|.-
T Consensus 66 ~wd~~~~~gG~~gp~~QS~r~~~y~~~~~~L~~~G~aY~c 105 (468)
T 1j09_A 66 SYDEGPDVGGPHGPYRQSERLPLYQKYAEELLKRGWAYRA 105 (468)
T ss_dssp CCSBBTTTBCTTCCCBGGGCHHHHHHHHHHHHHHTSEEEE
T ss_pred CCCCCCCCCCCCCCeeccCCHHHHHHHHHHHHHcCCeEEc
Confidence 566641 122336667778889999999999974
No 42
>2ja2_A Glutamyl-tRNA synthetase; non-discriminating glutamyl-tRNA aminoacylation, protein biosynthesis, aminoacyl-tRNA synthetase, ligase; 1.65A {Mycobacterium tuberculosis} PDB: 3pny_A 3pnv_A
Probab=96.79 E-value=0.0018 Score=75.08 Aligned_cols=90 Identities=23% Similarity=0.289 Sum_probs=66.5
Q ss_pred CCCCCCCCCCCchhHHHHHHHHHHHHHHHcCCcccccccccccChHHHHHHHHhCCCchHHHHHHHHHHHHHHHHcCCcc
Q 002217 102 FPYPSGAGLHVGHPLGYTATDILARLKRMQGYNVLHPMGWDAFGLPAEQYAIETGTHPKITTLRNINRFRTQLKSLGFSY 181 (952)
Q Consensus 102 ~Pypng~~lHiGH~~~~~~~Di~~Ry~r~~G~~V~~~~G~D~~Glpie~~a~~~g~~~~~~~~~~~~~~~~~l~~lgi~~ 181 (952)
+|-|+|. |||||+++.++.-.+||- ..|.-++ =+|+. ++......+.+.+.++|+.||+
T Consensus 12 APsPTG~-LHiG~~rtAL~n~l~Ar~--~gG~fiL---RieDt-------------D~~R~~~~~~~~I~~~L~wlGl-- 70 (498)
T 2ja2_A 12 CPSPTGT-PHVGLVRTALFNWAYARH--TGGTFVF---RIEDT-------------DAQRDSEESYLALLDALRWLGL-- 70 (498)
T ss_dssp CCCSSSS-CBHHHHHHHHHHHHHHHH--HTCEEEE---CBCCC-------------CTTTCCHHHHHHHHHHHHHHTC--
T ss_pred CcCCCCC-ccHHHHHHHHHHHHHHHH--cCCEEEE---EECcC-------------CCcccChHHHHHHHHHHHHcCC--
Confidence 7999998 999999999999888873 4564443 33443 2233345678899999999999
Q ss_pred ccCC---------cccCCChhHHHHHHHHHHHHHHCCceeee
Q 002217 182 DWNR---------EISTIEPAYYKWTQWIFLQLLKRGLAYQA 214 (952)
Q Consensus 182 Dw~~---------~~~T~~~~~~~~v~~~f~~L~~kGliy~~ 214 (952)
||+. .|+ ..++...-+....+|.++|++|.-
T Consensus 71 ~wDegp~~gG~~~~~~--QS~r~~~y~~~~~~L~~~g~aY~c 110 (498)
T 2ja2_A 71 DWDEGPEVGGPYGPYR--QSQRAEIYRDVLARLLAAGEAYHA 110 (498)
T ss_dssp CCSBBTTTBCTTCCCB--GGGCHHHHHHHHHHHHHTTSEEEE
T ss_pred CcCCCcCcCCCCCCee--eecCHHHHHHHHHHHHHcCCeEEe
Confidence 6666 232 235666677888999999999974
No 43
>4gri_A Glutamate--tRNA ligase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, aminoacyl-tRNA synthetase; HET: GLU; 2.60A {Borrelia burgdorferi}
Probab=96.75 E-value=0.0017 Score=75.85 Aligned_cols=92 Identities=17% Similarity=0.175 Sum_probs=63.6
Q ss_pred CCCCCCCCCCCchhHHHHHHHHHHHHHHHcCCcccccccccccChHHHHHHHHhCCCchHHHHHHHHHHHHHHHHcCCcc
Q 002217 102 FPYPSGAGLHVGHPLGYTATDILARLKRMQGYNVLHPMGWDAFGLPAEQYAIETGTHPKITTLRNINRFRTQLKSLGFSY 181 (952)
Q Consensus 102 ~Pypng~~lHiGH~~~~~~~Di~~Ry~r~~G~~V~~~~G~D~~Glpie~~a~~~g~~~~~~~~~~~~~~~~~l~~lgi~~ 181 (952)
+|-|||. |||||+++.++.-.+||- ..|. |+.=+|+... ......+.+.+.++|+-||+
T Consensus 30 APsPtG~-LHiG~artAl~n~~~Ar~--~~G~---fiLRieDtD~-------------~R~~~~~~~~I~~~L~wlGl-- 88 (512)
T 4gri_A 30 APSPTGL-QHIGGIRTALFNYFFAKS--CGGK---FLLRIEDTDQ-------------SRYSPEAENDLYSSLKWLGI-- 88 (512)
T ss_dssp CCCSSSC-CBHHHHHHHHHHHHHHHH--TTCE---EEECBCCCCT-------------TSCCHHHHHHHHHHHHHHTC--
T ss_pred CcCCCCc-ccHHHHHHHHHHHHHHHH--cCCE---EEEEeCcCCC-------------CcCCHHHHHHHHHHHHHcCC--
Confidence 8999998 999999999998888864 3554 3444455442 11234667888999999999
Q ss_pred ccCCccc------C-CChhHHHHHHHHHHHHHHCCceeee
Q 002217 182 DWNREIS------T-IEPAYYKWTQWIFLQLLKRGLAYQA 214 (952)
Q Consensus 182 Dw~~~~~------T-~~~~~~~~v~~~f~~L~~kGliy~~ 214 (952)
+|+..-. + ...++...-+....+|.++|++|.-
T Consensus 89 ~wDe~p~~~g~~~py~QS~r~~~Y~~~~~~L~~~G~aY~C 128 (512)
T 4gri_A 89 SFDEGPVVGGDYAPYVQSQRSAIYKQYAKYLIESGHAYYC 128 (512)
T ss_dssp CCSBBTTTBCTTCCCBGGGCHHHHHHHHHHHHHTTSEEEE
T ss_pred CCCcCCccCCCCCCccccchHHHHHHHHHHHHHcCCcccc
Confidence 5544211 1 1224445556788899999999964
No 44
>2cyb_A Tyrosyl-tRNA synthetase; rossmann-fold, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: TYR; 1.80A {Archaeoglobus fulgidus}
Probab=96.43 E-value=0.0019 Score=71.15 Aligned_cols=73 Identities=19% Similarity=0.255 Sum_probs=43.7
Q ss_pred EEEEcCCCCCCCCCCCCchhHHHHHHHHHHHHHHHcCCcccccccccccChHHHHHHHHhCCCchHHHHHHHHHHHHHHH
Q 002217 96 FYVLDMFPYPSGAGLHVGHPLGYTATDILARLKRMQGYNVLHPMGWDAFGLPAEQYAIETGTHPKITTLRNINRFRTQLK 175 (952)
Q Consensus 96 f~i~~~~Pypng~~lHiGH~~~~~~~Di~~Ry~r~~G~~V~~~~G~D~~Glpie~~a~~~g~~~~~~~~~~~~~~~~~l~ 175 (952)
+.++.|+ -|+|. ||+||+ .-+. .+.++++ .|+++.+..| |.|++-. . ..+++ ...++...+..++.
T Consensus 33 ~~vy~G~-~PTg~-lHlG~l-~~l~--~~~~lq~-~g~~~~~~i~-D~~a~~~-----d-~~~~~-~i~~~~~~~~~~~~ 98 (323)
T 2cyb_A 33 PRAYVGY-EPSGE-IHLGHM-MTVQ--KLMDLQE-AGFEIIVLLA-DIHAYLN-----E-KGTFE-EIAEVADYNKKVFI 98 (323)
T ss_dssp CEEEEEE-CCCSC-CBHHHH-HHHH--HHHHHHH-TTCEEEEEEC-HHHHHHT-----T-CCCHH-HHHHHHHHHHHHHH
T ss_pred CEEEECc-CCCCc-chHHHH-HHHH--HHHHHHH-CCCcEEEEEC-CceeEcC-----C-CCCHH-HHHHHHHHHHHHHH
Confidence 4555665 47797 999996 3222 3445554 4888766554 2233210 1 11333 45677888888999
Q ss_pred HcCCccccC
Q 002217 176 SLGFSYDWN 184 (952)
Q Consensus 176 ~lgi~~Dw~ 184 (952)
++|+ ||+
T Consensus 99 a~Gl--dp~ 105 (323)
T 2cyb_A 99 ALGL--DES 105 (323)
T ss_dssp HTTC--CTT
T ss_pred HhCC--Ccc
Confidence 9998 554
No 45
>3aii_A Glutamyl-tRNA synthetase; amino-acyl tRNA synthetase, ligase; 1.65A {Methanothermobacter thermautotrophicusorganism_taxid}
Probab=96.26 E-value=0.0019 Score=75.14 Aligned_cols=55 Identities=15% Similarity=0.138 Sum_probs=42.1
Q ss_pred cccccccCCCC---------------CCChhhHHhh-hCchhhhhhhhhcCCCCCCCCCChhhHHHHHHHH
Q 002217 706 RAHKMSKSRGN---------------VVNPDDVVTE-YGADSLRLYEMFMGPFRDSKTWNTSGIEGVHRFL 760 (952)
Q Consensus 706 ~g~KMSKSkGN---------------vV~P~eii~~-YGaDalRl~ll~~~~~~~~~~~s~~~i~~~~r~l 760 (952)
+|+|||||+|| ..+..++.++ |.++++|.|++..+....+.+|+.+.+..+.|..
T Consensus 326 ~g~KLSKR~~~~~v~~g~v~gWdDpr~~Ti~~lr~rG~~PeaIr~fl~~~G~s~~~~~~s~~~L~~~~r~~ 396 (553)
T 3aii_A 326 DDVALSTSGAREGILRGEYSGWDDPRLGTLRAIARRGIRPEAIRKLMVEIGVKIADSTMSWKKIYGLNRSI 396 (553)
T ss_dssp ------CHHHHHHHHHSSCCSTTCTTSCBHHHHHHTTCCHHHHHHHHHHHTTCSSCBCCCHHHHHHHHHHH
T ss_pred CCceechhhhhhhccccccccccCcchHHHHHHHHcCCCHHHHHHHHHhcCCCCccccccHHHHHHHHHHH
Confidence 38999999998 6778888887 9999999999988887788889999998876643
No 46
>1qtq_A GLNRS, protein (glutaminyl-tRNA synthetase); glutamine, trnaGln, E. coli, complex, ligase/RNA complex; HET: QSI; 2.25A {Escherichia coli} SCOP: b.53.1.2 c.26.1.1 PDB: 1gsg_P* 1gts_A* 1gtr_A* 1zjw_A* 1o0b_A* 1o0c_A* 1qru_A* 1qrs_A* 1qrt_A* 1euy_A* 1euq_A* 1exd_A* 2rd2_A* 2re8_A* 1nyl_A
Probab=93.51 E-value=0.021 Score=66.44 Aligned_cols=55 Identities=22% Similarity=0.220 Sum_probs=42.4
Q ss_pred ccccccccCCCC---------------CCChhhHHhh-hCchhhhhhhhhcCCCCCCCCCChhhHHHHHHH
Q 002217 705 ARAHKMSKSRGN---------------VVNPDDVVTE-YGADSLRLYEMFMGPFRDSKTWNTSGIEGVHRF 759 (952)
Q Consensus 705 ~~g~KMSKSkGN---------------vV~P~eii~~-YGaDalRl~ll~~~~~~~~~~~s~~~i~~~~r~ 759 (952)
.+|+|||||+|| .++..++.++ |.++++|.|++..+....+...+...++.+.++
T Consensus 263 ~~g~KLSKR~~~~~v~~g~v~gWDDPr~~Ti~~lr~rGy~PeAirnfl~~lG~s~~~~~~e~~~le~~~~~ 333 (553)
T 1qtq_A 263 LEYTVMSKRKLNLLVTDKHVEGWDDPRMPTISGLRRRGYTAASIREFCKRIGVTKQDNTIEMASLESCIRE 333 (553)
T ss_dssp BTTSCCCHHHHHHHHHTTSSSCTTCTTSCBHHHHHHHTCCHHHHHHHHHHHCCCSSCCCBCHHHHHHHHHH
T ss_pred CCCccccccccccccccCcccCCCCcchhhHHHHHHCCCCHHHHHHHHHHcCCCCCccccchhhHHHHHHh
Confidence 358999999997 6778899987 999999999998876544443455666665553
No 47
>2cfo_A Glutamyl-tRNA synthetase; ligase, aminoacyl-tRNA synthetase, ATP-binding, nucleotide-B; HET: GLU; 2.45A {Synechococcus elongatus}
Probab=93.45 E-value=0.042 Score=63.64 Aligned_cols=34 Identities=29% Similarity=0.395 Sum_probs=29.8
Q ss_pred cccccccCCCCCCChhhHHhh-hCchhhhhhhhhcC
Q 002217 706 RAHKMSKSRGNVVNPDDVVTE-YGADSLRLYEMFMG 740 (952)
Q Consensus 706 ~g~KMSKSkGNvV~P~eii~~-YGaDalRl~ll~~~ 740 (952)
+|+|||||+||+ ...++.++ |-++++|.|++..+
T Consensus 244 ~g~KLSKr~g~~-~l~~~r~~G~~peal~~~l~~lG 278 (492)
T 2cfo_A 244 TGQKLSKRDGVT-SISDFRAMGYLAPALANYMTLLG 278 (492)
T ss_dssp SSSBCCTTSSCC-BHHHHHHTTCCHHHHHHHHHHTT
T ss_pred CCCEecccCCcc-cHHHHHHCCCCHHHHHHHHHHhC
Confidence 389999999997 78888875 99999999999765
No 48
>2yxn_A Tyrosyl-tRNA synthetase; tRNA synthetases class I, structural genomics, NPPSFA, natio project on protein structural and functional analyses; HET: AZY; 1.80A {Escherichia coli str} PDB: 1wq3_A* 1wq4_A* 1x8x_A* 1vbn_A* 1vbm_A*
Probab=92.91 E-value=0.039 Score=60.50 Aligned_cols=31 Identities=16% Similarity=0.163 Sum_probs=25.0
Q ss_pred cccccccCCCCCCChhhHHhhhCchhhhhhhhh
Q 002217 706 RAHKMSKSRGNVVNPDDVVTEYGADSLRLYEMF 738 (952)
Q Consensus 706 ~g~KMSKSkGNvV~P~eii~~YGaDalRl~ll~ 738 (952)
+|+|||||.+|.|...+ ++-.++.++=+++.
T Consensus 232 dG~KMSKS~~n~I~L~d--~~tsp~~~~~ki~~ 262 (322)
T 2yxn_A 232 DGTKFGKTEGGAVWLDP--KKTSPYKFYQFWIN 262 (322)
T ss_dssp TSCBTTEETTEECBSST--TTSCHHHHHHHHHT
T ss_pred CcccccCCCCCeeeccC--CCCCHHHHHHHHhC
Confidence 37999999999998887 66777777776664
No 49
>1y42_X Tyrosyl-tRNA synthetase, mitochondrial; CYT-18, tRNA ligase, group I intron; HET: TYR; 1.95A {Neurospora crassa} PDB: 2rkj_A
Probab=92.67 E-value=0.064 Score=60.32 Aligned_cols=75 Identities=23% Similarity=0.274 Sum_probs=37.3
Q ss_pred EEEcCCCCCCCCCCCCchhHHHHHHHHHHHHHHHcCCcccccccccccCh---HHHHHHHHhCCCchHHHHHHHHHHHHH
Q 002217 97 YVLDMFPYPSGAGLHVGHPLGYTATDILARLKRMQGYNVLHPMGWDAFGL---PAEQYAIETGTHPKITTLRNINRFRTQ 173 (952)
Q Consensus 97 ~i~~~~Pypng~~lHiGH~~~~~~~Di~~Ry~r~~G~~V~~~~G~D~~Gl---pie~~a~~~g~~~~~~~~~~~~~~~~~ 173 (952)
.++.|+= |+|..|||||... + -.+.++++ .|+++++..| |.||+ |--.. ..+..-..+...+++..++.+
T Consensus 66 ~vy~G~d-PTg~sLHlGhlv~-l--~~l~~lQ~-~G~~~~~lIg-D~haligdpsgk~-~~R~~~~~e~i~~n~~~i~~~ 138 (392)
T 1y42_X 66 GAYVGID-PTAPSLHVGHLLP-L--MPLFWMYL-EGYKAFTLIG-GSTAKIGDPTGRL-KSRDHLSSSDATMNMTKIHYQ 138 (392)
T ss_dssp EEEEEEC-CCSSSCBGGGHHH-H--HHHHHHHH-HTCEEEEEEC-TTTTTTCCCCC------------CHHHHHHHHHHH
T ss_pred EEEEeec-CCCCCccHHHHHH-H--HHHHHHHH-cCCcEEEEEc-CceeEeCCCCCcc-hhhccCCHHHHHHHHHHHHHH
Confidence 3444532 4453489999773 2 23556664 4888877665 33332 21000 111111123345677777777
Q ss_pred HHHcC
Q 002217 174 LKSLG 178 (952)
Q Consensus 174 l~~lg 178 (952)
+.++|
T Consensus 139 ~~a~~ 143 (392)
T 1y42_X 139 LKKLW 143 (392)
T ss_dssp HHHHH
T ss_pred HHHHh
Confidence 77776
No 50
>2ts1_A Tyrosyl-tRNA synthetase; ligase (synthetase); 2.30A {Geobacillus stearothermophilus} SCOP: c.26.1.1 PDB: 3ts1_A* 1tyd_E* 1tya_E* 1tyc_A 1tyb_E* 4ts1_A* 1jh3_A
Probab=92.18 E-value=0.037 Score=62.71 Aligned_cols=31 Identities=10% Similarity=0.105 Sum_probs=22.0
Q ss_pred cccccccCCCCCCChhhHHhhhCchhhhhhhhh
Q 002217 706 RAHKMSKSRGNVVNPDDVVTEYGADSLRLYEMF 738 (952)
Q Consensus 706 ~g~KMSKSkGNvV~P~eii~~YGaDalRl~ll~ 738 (952)
+|+|||||.||.|...+ ++-.++.++=+++.
T Consensus 227 dG~KMSKS~~naI~L~d--~~tsp~~i~qki~~ 257 (419)
T 2ts1_A 227 DGTKFGKTESGTIWLDK--EKTSPYEFYQFWIN 257 (419)
T ss_dssp TSCCTTCCSSCCCBSST--TTSCHHHHHHHHHT
T ss_pred CcccccCCCCCeEecCC--CCCCHHHHHHHHhc
Confidence 37999999999998765 23455566555553
No 51
>1jil_A Tyrrs, tyrosyl-tRNA synthetase; truncation, based inhibitor design, ligase; HET: 485; 2.20A {Staphylococcus aureus} SCOP: c.26.1.1 PDB: 1jij_A* 1jii_A* 1jik_A*
Probab=92.15 E-value=0.041 Score=62.54 Aligned_cols=74 Identities=22% Similarity=0.300 Sum_probs=39.7
Q ss_pred EEEcCCCCCCCCCCCCchhHHHHHHHHHHHHHHHcCCcccccccccccCh---HHHHHHHHhCCCchHHHHHHHHHHHHH
Q 002217 97 YVLDMFPYPSGAGLHVGHPLGYTATDILARLKRMQGYNVLHPMGWDAFGL---PAEQYAIETGTHPKITTLRNINRFRTQ 173 (952)
Q Consensus 97 ~i~~~~Pypng~~lHiGH~~~~~~~Di~~Ry~r~~G~~V~~~~G~D~~Gl---pie~~a~~~g~~~~~~~~~~~~~~~~~ 173 (952)
.++.|+= |+|+.|||||... --.+.|+++ .|+++++..|= .||+ |.- +..++..-..+...+++..++.+
T Consensus 34 ~iy~G~d-PTg~sLHlGh~v~---l~~~~~lQ~-~G~~~~~lIgd-~ta~igdp~g-k~~~R~~l~~e~i~~n~~~~~~~ 106 (420)
T 1jil_A 34 TLYCGAD-PTADSLHIGHLLP---FLTLRRFQE-HGHRPIVLIGG-GTGMIGDPSG-KSEERVLQTEEQVDKNIEGISKQ 106 (420)
T ss_dssp EEEEEEC-CSSSSCBHHHHHH---HHHHHHHHH-TTCEEEEEECT-TGGGTCCCTT-CSSCCCCCCHHHHHHHHHHHHHH
T ss_pred EEEEeeC-CCCCCccHHHHHH---HHHHHHHHH-CCCcEEEEEcC-ceeEecCCCc-cccccccCCHHHHHHHHHHHHHH
Confidence 3444532 4453489999663 223556664 58988877663 3332 210 00011111234566777888888
Q ss_pred HHHc
Q 002217 174 LKSL 177 (952)
Q Consensus 174 l~~l 177 (952)
+.++
T Consensus 107 ~~~~ 110 (420)
T 1jil_A 107 MHNI 110 (420)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 8777
No 52
>2g36_A Tryptophanyl-tRNA synthetase; TM0492, structural genomics, joint center for struc genomics, JCSG, protein structure initiative, PSI, ligase; HET: TRP; 2.50A {Thermotoga maritima}
Probab=91.88 E-value=0.14 Score=56.61 Aligned_cols=69 Identities=19% Similarity=0.242 Sum_probs=41.6
Q ss_pred EcCCCCCCCCCCCCchhHHHHHHHHHHHHHHHcCCcccccccccccChHHHHHHHHhCCCchHHHHHHHHHHHHHHHHcC
Q 002217 99 LDMFPYPSGAGLHVGHPLGYTATDILARLKRMQGYNVLHPMGWDAFGLPAEQYAIETGTHPKITTLRNINRFRTQLKSLG 178 (952)
Q Consensus 99 ~~~~Pypng~~lHiGH~~~~~~~Di~~Ry~r~~G~~V~~~~G~D~~Glpie~~a~~~g~~~~~~~~~~~~~~~~~l~~lg 178 (952)
++|+. |+|. |||||..+.+. -+.+++ ..|+++.+.. -|.|++-. ...+|.+ ..+++..+...+.++|
T Consensus 16 ~~G~~-PTG~-lHLGn~~g~l~--~~~~lQ-~~G~~~~~~I-aD~ha~t~------~~~dp~~-~~~~~~~~~~~~lA~G 82 (340)
T 2g36_A 16 LSGMR-PTGK-LHIGHLVGALE--NWVKLQ-EEGNECFYFV-ADWHALTT------HYDDVSK-LKEYTRDLVRGFLACG 82 (340)
T ss_dssp EEEEC-CCSS-CBHHHHHTHHH--HHHHHH-HTTCEEEEEE-CHHHHHHH------HTTCCTT-HHHHHHHHHHHHHHTT
T ss_pred EEeeC-CCCc-ccHHhHHHHHH--HHHHHH-HCCCCEEEEE-ecceeecC------CCCCHHH-HHHHHHHHHHHHHHhC
Confidence 34543 5676 99999998542 344444 4689988776 34555421 1234544 4455666666777788
Q ss_pred Cc
Q 002217 179 FS 180 (952)
Q Consensus 179 i~ 180 (952)
+.
T Consensus 83 ld 84 (340)
T 2g36_A 83 ID 84 (340)
T ss_dssp CC
T ss_pred CC
Confidence 73
No 53
>2jan_A Tyrosyl-tRNA synthetase; protein biosynthesis, aminoacyl-tRNA synthetase, tyrrs, ligase, tyrosine, RNA-binding, ATP-binding; 2.9A {Mycobacterium tuberculosis}
Probab=91.80 E-value=0.042 Score=62.40 Aligned_cols=31 Identities=19% Similarity=0.106 Sum_probs=21.4
Q ss_pred cccccccCCCC-CCChhhHHhhhCchhhhhhhhh
Q 002217 706 RAHKMSKSRGN-VVNPDDVVTEYGADSLRLYEMF 738 (952)
Q Consensus 706 ~g~KMSKSkGN-vV~P~eii~~YGaDalRl~ll~ 738 (952)
+|+|||||.|| .|...+ ++-.++.++=+++.
T Consensus 228 dG~KMSKS~~nsaI~L~d--~~tsp~~i~qki~~ 259 (432)
T 2jan_A 228 DGTKFGKSTGGGSLWLDP--QMTSPYAWYQYFVN 259 (432)
T ss_dssp TSCBTTBCSSSCBCBSST--TTSCHHHHHHHHHT
T ss_pred CcCcCCCCCCCCeEEccC--CCCCHHHHHHHHhc
Confidence 37999999999 887665 24455555555553
No 54
>3tzl_A Tryptophanyl-tRNA synthetase; structural genomics, center for structural genomics of infec diseases, csgid, alpha-beta structure; HET: ADP TRP; 2.15A {Campylobacter jejuni subsp} SCOP: c.26.1.0 PDB: 3m5w_A*
Probab=91.80 E-value=0.12 Score=56.68 Aligned_cols=61 Identities=18% Similarity=0.295 Sum_probs=38.4
Q ss_pred CCCCCCCCchhHHHHHHHHHHHHHHHcCCcccccccccccChHHHHHHHHhCCCchHHHHHHHHHHHHHHHHcCC
Q 002217 105 PSGAGLHVGHPLGYTATDILARLKRMQGYNVLHPMGWDAFGLPAEQYAIETGTHPKITTLRNINRFRTQLKSLGF 179 (952)
Q Consensus 105 png~~lHiGH~~~~~~~Di~~Ry~r~~G~~V~~~~G~D~~Glpie~~a~~~g~~~~~~~~~~~~~~~~~l~~lgi 179 (952)
|+|. |||||..+.+.. +.++++ |+++.+..| |.|++-. ..++ +...+++..+..++.++|+
T Consensus 12 PTg~-lHlG~~lg~l~~--~~~lQ~--g~~~~~~ia-D~ha~~~-------~~~~-~~l~~~~~~~~~~~lA~Gl 72 (322)
T 3tzl_A 12 PSGD-LHIGNYFGAIKQ--MVDAQE--KSQMFMFIA-NYHAMTS-------SQDG-EKLKQNSLKAAAAFLSLGI 72 (322)
T ss_dssp CSSC-CBHHHHHHTHHH--HHHTTT--TSCCEEEEC-HHHHTTT-------CCCH-HHHHHHHHHHHHHHHHTTC
T ss_pred CCcc-ccHHHHHHHHHH--HHHHhc--CCCEEEEEe-cCeeecC-------CCCH-HHHHHHHHHHHHHHHHcCC
Confidence 5676 999998875543 556666 999877776 5565421 1122 3345556666667777776
No 55
>2pid_A Tyrosyl-tRNA synthetase; aminoacyl-tRNA synthetase, protein-substrate complex, ATP-BI ligase, mitochondrion, nucleotide-binding, protein biosynth; HET: YSA; 2.20A {Homo sapiens} PDB: 3zxi_A*
Probab=91.71 E-value=0.036 Score=61.57 Aligned_cols=31 Identities=23% Similarity=0.179 Sum_probs=13.9
Q ss_pred cccccccCCCCCCChhhHHhhhCchhhhhhhhh
Q 002217 706 RAHKMSKSRGNVVNPDDVVTEYGADSLRLYEMF 738 (952)
Q Consensus 706 ~g~KMSKSkGNvV~P~eii~~YGaDalRl~ll~ 738 (952)
+|+|||||.||.|...+ ++-.++.++=+++.
T Consensus 251 dG~KMSKS~~naI~L~d--~~tsp~~i~~ki~~ 281 (356)
T 2pid_A 251 TGAKLGKSAGNAVWLNR--DKTSPFELYQFFVR 281 (356)
T ss_dssp -----------CCBSST--TTSCHHHHHHHHHT
T ss_pred CcccccCCCCCeeeccC--CCCCHHHHHHHHHc
Confidence 37899999999998776 35567777766664
No 56
>1h3f_A Tyrosyl-tRNA synthetase; ligase, aminoacyl-tRNA synthetase; HET: TYE; 2.00A {Thermus thermophilus} SCOP: c.26.1.1 d.66.1.4 PDB: 1h3e_A*
Probab=91.62 E-value=0.07 Score=60.75 Aligned_cols=28 Identities=25% Similarity=0.220 Sum_probs=23.2
Q ss_pred c-cccccCCCCCCChhhHHhhhCchhhhhhhhhc
Q 002217 707 A-HKMSKSRGNVVNPDDVVTEYGADSLRLYEMFM 739 (952)
Q Consensus 707 g-~KMSKSkGNvV~P~eii~~YGaDalRl~ll~~ 739 (952)
| +|||||.||.|...+ .++.++=+++..
T Consensus 229 G~~KMSKS~~n~I~L~d-----sp~~i~~Ki~~~ 257 (432)
T 1h3f_A 229 GREKMSKSLDNYIGLTE-----PPEAMFKKLMRV 257 (432)
T ss_dssp SSSBCCGGGTCCCBTTS-----CHHHHHHHHHTS
T ss_pred CccccCcCCCCeeCCCC-----CHHHHHHHHhCC
Confidence 5 499999999999888 788888777753
No 57
>2el7_A Tryptophanyl-tRNA synthetase; aminoacyl-tRNA synthetase, translation, structural GEN NPPSFA; 2.50A {Thermus thermophilus}
Probab=90.97 E-value=0.17 Score=55.71 Aligned_cols=65 Identities=17% Similarity=0.172 Sum_probs=37.6
Q ss_pred CCCCCCCCchhHHHHHHHHHHHHHHHcC-CcccccccccccChHHHHHHHHhCCCchHHHHHHHHHHHHHHHHcCCc
Q 002217 105 PSGAGLHVGHPLGYTATDILARLKRMQG-YNVLHPMGWDAFGLPAEQYAIETGTHPKITTLRNINRFRTQLKSLGFS 180 (952)
Q Consensus 105 png~~lHiGH~~~~~~~Di~~Ry~r~~G-~~V~~~~G~D~~Glpie~~a~~~g~~~~~~~~~~~~~~~~~l~~lgi~ 180 (952)
|+|. |||||..+.+. -+.++++ .| +++.+..| |.|++-.- .+.+ .+...+++..+..++.++|+.
T Consensus 10 PTg~-lHlGh~~g~l~--~~~~lQ~-~G~~~~~~~Ia-D~~a~~~~-----~~~~-~~~i~~~~~~~~~~~la~Gld 75 (337)
T 2el7_A 10 PSGE-IHIGNYLGAIK--QWVAIGE-KLGRDAFFCIV-DYHALTNP-----LAYD-PSTLAQRTFEAALVNIAAGLD 75 (337)
T ss_dssp SCSC-CBHHHHHTHHH--HHHHHHH-HHGGGEEEEEC-GGGGGGST-----TTSC-HHHHHHHHHHHHHHHHHHTCC
T ss_pred CCCc-ccHHHHHHHHH--HHHHHHh-cCCCCEEEEEe-CceeecCC-----CCCC-HHHHHHHHHHHHHHHHHhCCC
Confidence 5587 99999887642 2445554 46 88765554 33454110 0122 244556666667777788873
No 58
>1ile_A Ilers, isoleucyl-tRNA synthetase; aminoacyl-tRNA synthetase, riken structural genomics/proteom initiative, RSGI, structural genomics; 2.50A {Thermus thermophilus} SCOP: a.27.1.1 b.51.1.1 c.26.1.1 PDB: 1jzq_A* 1jzs_A*
Probab=90.06 E-value=0.083 Score=65.48 Aligned_cols=76 Identities=22% Similarity=0.462 Sum_probs=58.0
Q ss_pred HHHHHHHHHHHHCCceeeeccccccCCCCCcccCchhhccCccccCCCCeEEeeccccchhhhhhhhHhhccCCCCCC-c
Q 002217 196 KWTQWIFLQLLKRGLAYQAEVPVNWCPALGTVLANEEVVDGVSERGGHPVIRKPMRQWMLKITEYADRLLDDLDDLDW-P 274 (952)
Q Consensus 196 ~~v~~~f~~L~~kGliy~~~~~v~wc~~~~t~ls~~Ev~~~~~~~~~~~~~~~~~~~~~~~i~~y~~~l~~~l~~~~~-p 274 (952)
++-..+...|.++|++.......+ .+++|++||.+++.+..+||||+++++++++++.+++..| |
T Consensus 361 ~a~~~i~~~L~~~g~~~~~~~~~h--------------~~p~c~r~~~~~~~~~~~qWF~~~~~~~~~~~~~~~~~~~~P 426 (821)
T 1ile_A 361 EANRAILRDLRGRGLLFKEESYLH--------------SYPHCWRCSTPLMYYATESWFIKNTLFKDELIRNNQEIHWVP 426 (821)
T ss_dssp HHHHHHHHHHHHTTCEEEEEEEEE--------------EEEBCSSSCCBCEEEECCEEEECGGGGHHHHHHHHHHSEESS
T ss_pred HHHHHHHHHHHhCCCeeeeecccc--------------cCCEecCCCCEEEEEecchhhhchHHHHHHHHHHhcCeEEEC
Confidence 455667788999999876643311 2456778888999999999999999999999999887776 7
Q ss_pred hHHH-HHHHhhh
Q 002217 275 ESVK-EMQRNWI 285 (952)
Q Consensus 275 ~~~~-~~~~~~i 285 (952)
+..+ +...+||
T Consensus 427 ~~~~~~~~~~~l 438 (821)
T 1ile_A 427 PHIKEGRYGEWL 438 (821)
T ss_dssp GGGTTTTTHHHH
T ss_pred chhhHhHHHHHH
Confidence 7663 3455666
No 59
>1n3l_A Tyrosyl-tRNA synthetase; rossmann fold AS catalytic domain, unique anticodon recognit domain, dimer, ligase; 1.18A {Homo sapiens} SCOP: c.26.1.1 PDB: 1q11_A*
Probab=89.93 E-value=0.14 Score=57.32 Aligned_cols=38 Identities=16% Similarity=0.133 Sum_probs=26.0
Q ss_pred EEEcCCCCCCCCCCCCchhHHHHHHHHHHHHHHHcCCccccccc
Q 002217 97 YVLDMFPYPSGAGLHVGHPLGYTATDILARLKRMQGYNVLHPMG 140 (952)
Q Consensus 97 ~i~~~~Pypng~~lHiGH~~~~~~~Di~~Ry~r~~G~~V~~~~G 140 (952)
.++.|+- |+|. |||||.++.+. ..++++ .|+++.+..|
T Consensus 37 ~vy~G~~-PTG~-lHlG~~~~~l~---~~~~~q-~g~~~i~~I~ 74 (372)
T 1n3l_A 37 KIYWGTA-TTGK-PHVAYFVPMSK---IADFLK-AGCEVTILFA 74 (372)
T ss_dssp EEEEEEC-CSSC-CBGGGHHHHHH---HHHHHH-TTCEEEEEEC
T ss_pred EEEeCcC-CCCc-ccHHHHHHHHH---HHHHHH-CCCCEEEEEc
Confidence 4555654 6786 99999877543 455555 7888876665
No 60
>2hz7_A Glutaminyl-tRNA synthetase; rossmann fold, GLNRS core, class I aminoacyl-tRNA synthetase, ligase; 2.30A {Deinococcus radiodurans}
Probab=89.60 E-value=0.083 Score=64.37 Aligned_cols=54 Identities=15% Similarity=0.100 Sum_probs=40.4
Q ss_pred ccccccccCCCC---------------CCChhhHHhh-hCchhhhhhhhhcCCCCCCCCCChhhHHHHHH
Q 002217 705 ARAHKMSKSRGN---------------VVNPDDVVTE-YGADSLRLYEMFMGPFRDSKTWNTSGIEGVHR 758 (952)
Q Consensus 705 ~~g~KMSKSkGN---------------vV~P~eii~~-YGaDalRl~ll~~~~~~~~~~~s~~~i~~~~r 758 (952)
.+|+|||||+|| .++..++.++ |.++++|.|++..+....+...+...++.+.+
T Consensus 303 ~~g~KLSKR~g~~~v~~g~v~gwDDPr~~TI~~lr~rGy~PeAIr~fl~~lG~s~~~~~~e~~~le~~~r 372 (851)
T 2hz7_A 303 LEYTITSKRKLRELVQAGRVSGWDDPRMPTLRAQRRLGVTPEAVRAFAAQIGVSRTNRTVDIAVYENAVR 372 (851)
T ss_dssp ETTCCCCHHHHHHHHHTTSSSSTTCTTSSBHHHHHHHTCCHHHHHHHHHHSCCCSSCEEECHHHHHHHHH
T ss_pred CCCccccccccccccccCcccCCCCcchhHHHHHHHcCCCHHHHHHHHHhcCCCCCcccccHHHHHHHHH
Confidence 358999999987 5677888877 99999999999877654443345555665544
No 61
>2zp1_A Tyrosyl-tRNA synthetase; tRNA synthetases class I, ligase, aminoacyl-tRNA synthetase, ATP-binding, cytoplasm, nucleotide-binding; HET: IYR; 1.70A {Methanocaldococcus jannaschii} PDB: 1zh6_A* 1j1u_A* 1u7d_A 2q1g_A* 2pxh_A* 1zh0_A* 2q1i_A* 2ag6_A* 3qe4_A* 3d6u_A* 3d6v_A* 1u7x_A 3n2y_A* 2hgz_A*
Probab=89.46 E-value=0.19 Score=54.88 Aligned_cols=71 Identities=17% Similarity=0.279 Sum_probs=42.7
Q ss_pred cEEEEcCCCCCCCCCCCCchhHHHHHHHHHHHHHHHcCCcccccccccccChHHHHHHHHhCCCchHHHHHHHHHHHHHH
Q 002217 95 KFYVLDMFPYPSGAGLHVGHPLGYTATDILARLKRMQGYNVLHPMGWDAFGLPAEQYAIETGTHPKITTLRNINRFRTQL 174 (952)
Q Consensus 95 kf~i~~~~Pypng~~lHiGH~~~~~~~Di~~Ry~r~~G~~V~~~~G~D~~Glpie~~a~~~g~~~~~~~~~~~~~~~~~l 174 (952)
++.++.|+= |+|. ||||| ++-+. .+.++++ .|+++.+..| |.|++-. ..| ..+...++...+..++
T Consensus 28 ~~~vy~G~~-PTg~-lHlGh-l~~l~--~~~~lQ~-~g~~~~~~i~-D~~a~~~-----~~~--~~e~i~~~~~~~~~~~ 93 (314)
T 2zp1_A 28 EKSAYIGFE-PSGK-IHLGH-YLQIK--KMIDLQN-AGFDIIILLA-DLAAYLN-----QKG--ELDEIRKIGDYNKKVF 93 (314)
T ss_dssp SEEEEEEEC-CCSS-CBHHH-HHHHH--HHHHHHH-TTEEEEEEEC-HHHHHHT-----TCC--CHHHHHHHHHHHHHHH
T ss_pred CCEEEEccC-CCCC-cchhh-HHHHH--HHHHHHH-CCCCEEEEEe-cceEecC-----CCC--CHHHHHHHHHHHHHHH
Confidence 455555643 3687 99999 55433 2455554 5888877765 2233311 111 2345567778888888
Q ss_pred HHcCC
Q 002217 175 KSLGF 179 (952)
Q Consensus 175 ~~lgi 179 (952)
.++|+
T Consensus 94 ~a~G~ 98 (314)
T 2zp1_A 94 EAMGL 98 (314)
T ss_dssp HHTTC
T ss_pred HhcCC
Confidence 88887
No 62
>2o5r_A Glutamyl-tRNA synthetase 1; TM1351, EC 6.1.1.17, glutamate-T ligase 1, glurs 1, structural genomics, joint center for ST genomics, JCSG; 2.34A {Thermotoga maritima}
Probab=89.30 E-value=0.22 Score=57.58 Aligned_cols=34 Identities=24% Similarity=0.381 Sum_probs=29.5
Q ss_pred cccccccCCCCCCChhhHHhh-hCchhhhhhhhhcC
Q 002217 706 RAHKMSKSRGNVVNPDDVVTE-YGADSLRLYEMFMG 740 (952)
Q Consensus 706 ~g~KMSKSkGNvV~P~eii~~-YGaDalRl~ll~~~ 740 (952)
+|+||||++||+ ...++.++ |-++++|.|++..+
T Consensus 259 ~G~KLSKR~g~~-~l~~~~~~G~~peal~~~l~~lG 293 (481)
T 2o5r_A 259 DGKKLSKRHGAT-SVEAFRDMGYLPEALVNYLALLG 293 (481)
T ss_dssp TSSBCCGGGSCC-BHHHHHHHTCCHHHHHHHHHTSS
T ss_pred CCCcccCcCCcc-cHHHHHHCCCCHHHHHHHHHHhC
Confidence 379999999999 88888885 88999999988765
No 63
>1wkb_A Leucyl-tRNA synthetase; leucine, aminoacyl-tRNA, editing, amino acid, aminoacylation, trnaLeu, structural genomics; 2.05A {Pyrococcus horikoshii}
Probab=88.71 E-value=0.092 Score=65.05 Aligned_cols=93 Identities=15% Similarity=0.144 Sum_probs=61.7
Q ss_pred hhHHHHHHHHHHHHHHCCceeeeccccccCCCCC------------cccCchhhc-cCccccCCCCeEEe-eccccchhh
Q 002217 192 PAYYKWTQWIFLQLLKRGLAYQAEVPVNWCPALG------------TVLANEEVV-DGVSERGGHPVIRK-PMRQWMLKI 257 (952)
Q Consensus 192 ~~~~~~v~~~f~~L~~kGliy~~~~~v~wc~~~~------------t~ls~~Ev~-~~~~~~~~~~~~~~-~~~~~~~~i 257 (952)
+.+.+.++.+|.+++.+|.++.+.. .-+|..+. ..+...++. .+.|++||.+++.+ .++||||++
T Consensus 391 ~~~~~~~~~~~~~~~~~G~~~~g~~-~G~~v~~a~~~i~~~L~~~g~~~~~~~~~~~~~~~r~g~~vi~~~~~~qwF~~~ 469 (810)
T 1wkb_A 391 EKLEQATKTIYKAEYHKGIFKVPPY-EGKPVQEVKEAIAKEMLEKGIAEIMYEFAEKNVISRFGNRAVIKIIHDQWFIDY 469 (810)
T ss_dssp SCTHHHHHHHHHHHHHSCEECSGGG-TTEEHHHHHHHHHHHHHTTTSEEEEEEESSSCCBCTTSCBCEEEEEEEEEEECT
T ss_pred hhhhhhhhhhhhccccCceEeccCc-CCeEHHHhHHHHHHHHHhCCCeeeEEecCCCCcCCCCCCEEEEEecCCceeEec
Confidence 3466777777777777777762211 11122110 000111111 36678899998877 689999999
Q ss_pred hh--hhhHhhccCCCCC-CchHHHHHHHhhh
Q 002217 258 TE--YADRLLDDLDDLD-WPESVKEMQRNWI 285 (952)
Q Consensus 258 ~~--y~~~l~~~l~~~~-~p~~~~~~~~~~i 285 (952)
++ +++.+++.+++.. +|+..++...+|+
T Consensus 470 ~~~~~~~~~l~~~~~~~~~P~~~~~~~~~~l 500 (810)
T 1wkb_A 470 GNPEWKEKARKALERMKILPETRRAQFEAII 500 (810)
T ss_dssp TCHHHHHHHHHHHHTSEEESGGGHHHHHHHH
T ss_pred ChHHHHHHHHhhhcccEEECcchhchHHHHh
Confidence 85 9999999998776 5888888888887
No 64
>1ffy_A Isoleucyl-tRNA synthetase; protein-RNA complex, metal IONS, editing tRNA synthetase, double-sieve, ligase/RNA, mupiroci; HET: MRC; 2.20A {Staphylococcus aureus} SCOP: a.27.1.1 b.51.1.1 c.26.1.1 PDB: 1qu2_A* 1qu3_A*
Probab=88.57 E-value=0.12 Score=64.60 Aligned_cols=52 Identities=21% Similarity=0.307 Sum_probs=47.5
Q ss_pred cCccccCCCCeEEeeccccchhhhhhhhHhhccCCCCCC-chHHHHHHHhhhc
Q 002217 235 DGVSERGGHPVIRKPMRQWMLKITEYADRLLDDLDDLDW-PESVKEMQRNWIG 286 (952)
Q Consensus 235 ~~~~~~~~~~~~~~~~~~~~~~i~~y~~~l~~~l~~~~~-p~~~~~~~~~~i~ 286 (952)
+++||||+.|++.+..+|||++++++++++++.+++..| |+..++...+||.
T Consensus 394 ~p~c~R~~~pv~~r~t~QWFi~~~~lr~~~l~~i~~~~~~P~~~~~r~~~~l~ 446 (917)
T 1ffy_A 394 YPHDWRTKKPVIFRATPQWFASISKVRQDILDAIENTNFKVNWGKTRIYNMVR 446 (917)
T ss_dssp EEEETTTCCBCEEEEEEEEEECHHHHHHHHHHHHHTSEESSHHHHHHHHHHHH
T ss_pred CCEecCCCCEEEEEeccceEeeHHHHHHHHHHHHhcCcccCHHHHHHHHHHHh
Confidence 578999999999999999999999999999999998875 9999999999984
No 65
>1gax_A Valrs, valyl-tRNA synthetase; protein-RNA complex, rossmann fold, coiled coil, riken structural genomics/proteomics initiative, RSGI; HET: VAA; 2.90A {Thermus thermophilus} SCOP: a.2.7.3 a.27.1.1 b.51.1.1 c.26.1.1 PDB: 1ivs_A* 1iyw_A
Probab=88.55 E-value=0.21 Score=61.98 Aligned_cols=77 Identities=21% Similarity=0.354 Sum_probs=60.7
Q ss_pred HHHHHHHHHHHHCCceeeeccccccCCCCCcccCchhhccCccccCCCCeEEeeccccchhhhhhhhHhhccCC--CCC-
Q 002217 196 KWTQWIFLQLLKRGLAYQAEVPVNWCPALGTVLANEEVVDGVSERGGHPVIRKPMRQWMLKITEYADRLLDDLD--DLD- 272 (952)
Q Consensus 196 ~~v~~~f~~L~~kGliy~~~~~v~wc~~~~t~ls~~Ev~~~~~~~~~~~~~~~~~~~~~~~i~~y~~~l~~~l~--~~~- 272 (952)
+.-..+...|.++|++...... +...++|++|+.+++.+..+|||++++.+++.+++.++ ...
T Consensus 316 ~a~~~iv~~L~~~g~l~~~~~~--------------~h~~p~c~R~~~~i~~~~~~qWFv~~~~~~~~~l~~v~~~~~~~ 381 (862)
T 1gax_A 316 EARRKAVELFREAGHLVKEEDY--------------TIALATCSRCGTPIEYAIFPQWWLRMRPLAEEVLKGLRRGDIAF 381 (862)
T ss_dssp HHHHHHHHHHHTTTCEEEEEEE--------------EECCEEETTTCSBCCEEECCEEEECHHHHHHHHHHHHHHTCCEE
T ss_pred HHHHHHHHHHHhCCCeeeeccc--------------cccCCeecCCCCeEEEEecceEEEEhHHHHHHHHHHHHcCCceE
Confidence 3456677889999998755322 12346778888899999999999999999999999985 344
Q ss_pred CchHHHHHHHhhhc
Q 002217 273 WPESVKEMQRNWIG 286 (952)
Q Consensus 273 ~p~~~~~~~~~~i~ 286 (952)
+|+..++...+||.
T Consensus 382 ~P~~~~~~~~~wl~ 395 (862)
T 1gax_A 382 VPERWKKVNMDWLE 395 (862)
T ss_dssp SSSHHHHHHHHHHH
T ss_pred cCHHHHHHHHHHHh
Confidence 69999999999983
No 66
>1yi8_B Tryptophanyl-tRNA synthetase; ligase; HET: TRP; 2.10A {Deinococcus radiodurans} PDB: 1yia_B* 1yid_B* 2a4m_A*
Probab=87.96 E-value=0.39 Score=53.13 Aligned_cols=70 Identities=24% Similarity=0.244 Sum_probs=40.4
Q ss_pred EEEEcCCCCCCCCCCCCchhHHHHHHHHHHHHHHHcCCcccccccccccChHHHHHHHHhCCCchHHHHHHHHHHHHHHH
Q 002217 96 FYVLDMFPYPSGAGLHVGHPLGYTATDILARLKRMQGYNVLHPMGWDAFGLPAEQYAIETGTHPKITTLRNINRFRTQLK 175 (952)
Q Consensus 96 f~i~~~~Pypng~~lHiGH~~~~~~~Di~~Ry~r~~G~~V~~~~G~D~~Glpie~~a~~~g~~~~~~~~~~~~~~~~~l~ 175 (952)
+.++.|+= |+|. |||||..+.+. -+.++++ .+++.+.. .|.|++-.. ..++ +...++...+..++.
T Consensus 23 ~~vysG~~-PTG~-lHLGn~~g~l~--~~~~lQ~--~~~~~~~I-aD~ha~~~~------~~~~-e~i~~~~~~~~~~~l 88 (351)
T 1yi8_B 23 PRVLTGDR-PTGA-LHLGHLAGSLQ--NRVRLQD--EAELFVLL-ADVQALTDH------FDRP-EQVRENVLAVALDYL 88 (351)
T ss_dssp SEEEEEEC-CSSC-CBHHHHHHTHH--HHHHHTS--SSEEEEEE-CHHHHHHHH------TTCH-HHHHHHHHHHHHHHH
T ss_pred cEEEEeeC-CCCC-ccHHHHHHHHH--HHHHHHH--hCCeEEEE-ecchhhcCC------CCCH-HHHHHHHHHHHHHHH
Confidence 44555543 4688 99999998542 2233333 36775544 344554221 2333 345566667777888
Q ss_pred HcCC
Q 002217 176 SLGF 179 (952)
Q Consensus 176 ~lgi 179 (952)
++|+
T Consensus 89 a~Gl 92 (351)
T 1yi8_B 89 AAGL 92 (351)
T ss_dssp HHTC
T ss_pred HhCC
Confidence 8887
No 67
>2yy5_A Tryptophanyl-tRNA synthetase; aminoaccyl tRNA synthetase, structural genomics, NPPSFA; HET: WSA; 2.55A {Mycoplasma pneumoniae}
Probab=87.76 E-value=0.46 Score=52.56 Aligned_cols=70 Identities=20% Similarity=0.300 Sum_probs=40.8
Q ss_pred EEEcCCCCCCCCCCCCchhHHHHHHHHHHHHHHHcCCcccccccccccChHHHHHHHHhCCCchHHHHHHHHHHHHHHHH
Q 002217 97 YVLDMFPYPSGAGLHVGHPLGYTATDILARLKRMQGYNVLHPMGWDAFGLPAEQYAIETGTHPKITTLRNINRFRTQLKS 176 (952)
Q Consensus 97 ~i~~~~Pypng~~lHiGH~~~~~~~Di~~Ry~r~~G~~V~~~~G~D~~Glpie~~a~~~g~~~~~~~~~~~~~~~~~l~~ 176 (952)
.+++|+= |+|. |||||..+.+.. +.+++. |+++.+..| |-|++-.. .+++ ...++...+..++.+
T Consensus 6 ~i~sG~~-PTG~-lHLGn~vg~l~~--~~~lQ~--~~~~~~~Ia-D~ha~~~~-------~d~~-~i~~~~~~~~~~~lA 70 (348)
T 2yy5_A 6 RALTGIQ-ASGK-QHLGNYLGVMQS--LIELQE--QCQLFVFVA-DLHSITVD-------FQPQ-ALKQNNFDLVRTLLA 70 (348)
T ss_dssp EEEEEEC-CCTT-CBHHHHHHTGGG--HHHHHH--HSEEEEEEC-HHHHTTSC-------CCHH-HHHHHHHHHHHHHHH
T ss_pred EEEEeeC-CCCc-ccHHHHHHHHHH--HHHHHh--CCcEEEEEc-ChhhccCC-------CCHH-HHHHHHHHHHHHHHH
Confidence 3444532 4587 999999876532 335554 788765554 33443110 2333 344566677778888
Q ss_pred cCCcc
Q 002217 177 LGFSY 181 (952)
Q Consensus 177 lgi~~ 181 (952)
+|+..
T Consensus 71 ~Gldp 75 (348)
T 2yy5_A 71 VGLDP 75 (348)
T ss_dssp TTCCT
T ss_pred hCCCh
Confidence 88843
No 68
>3tzl_A Tryptophanyl-tRNA synthetase; structural genomics, center for structural genomics of infec diseases, csgid, alpha-beta structure; HET: ADP TRP; 2.15A {Campylobacter jejuni subsp} SCOP: c.26.1.0 PDB: 3m5w_A*
Probab=87.73 E-value=0.46 Score=51.94 Aligned_cols=28 Identities=25% Similarity=0.152 Sum_probs=20.4
Q ss_pred cccccccCCCCCCChhhHHhhhCchhhhhhhhh
Q 002217 706 RAHKMSKSRGNVVNPDDVVTEYGADSLRLYEMF 738 (952)
Q Consensus 706 ~g~KMSKSkGNvV~P~eii~~YGaDalRl~ll~ 738 (952)
+|+|||||.+|.|...| .++.++=.++.
T Consensus 189 ~G~KMSKS~~n~I~L~d-----~p~~i~~KI~~ 216 (322)
T 3tzl_A 189 DGAKMSKSYQNTIDIFS-----SEKTLKKQISS 216 (322)
T ss_dssp TSSBCCGGGTCCCBSSC-----CHHHHHHHHHT
T ss_pred CCCcCCCCCCCceecCC-----CHHHHHHHHHh
Confidence 37999999999997665 45556655553
No 69
>3vgj_A Tyrosyl-tRNA synthetase, putative; tyrrs, ligase; HET: YAP; 2.21A {Plasmodium falciparum}
Probab=86.91 E-value=0.26 Score=55.06 Aligned_cols=72 Identities=22% Similarity=0.285 Sum_probs=38.1
Q ss_pred EEEcCCCCCCCCCCCCchhHHHHHHH-HHHHHHHHcCCcccccccccccChHHHHHHHHhCCCchHHHHHHHHHHHHHHH
Q 002217 97 YVLDMFPYPSGAGLHVGHPLGYTATD-ILARLKRMQGYNVLHPMGWDAFGLPAEQYAIETGTHPKITTLRNINRFRTQLK 175 (952)
Q Consensus 97 ~i~~~~Pypng~~lHiGH~~~~~~~D-i~~Ry~r~~G~~V~~~~G~D~~Glpie~~a~~~g~~~~~~~~~~~~~~~~~l~ 175 (952)
.++.|+= |+|. |||||. ++.= .+.++++ .|++|.+..| |-|++-. ...|.++.+ ...+...+.+.+.
T Consensus 58 ~iy~G~~-PTg~-lHlG~g---vl~~~~~~~lQ~-~G~~~~~lIa-D~ha~i~----d~~~~~~~~-i~~~~~~~~~~~~ 125 (373)
T 3vgj_A 58 ICYDGFE-PSGR-MHIAQG---LLKSIIVNKLTS-NGCTFIFWIA-DWFAHLN----NKMSGDLKK-IKKVGSYFIEVWK 125 (373)
T ss_dssp EEEEEEC-CCSS-CBHHHH---HHHHHHHHHHHT-TTCEEEEEEC-HHHHHHT----TGGGGCHHH-HHHHHHHHHHHHH
T ss_pred eEEeCCC-CCCC-ceehhh---HHHHHHHHHHHH-CCCcEEEEEe-cceeEec----CCCCCCHHH-HHHHHHHHHHHHH
Confidence 4455542 5576 999992 3332 2455554 5898887776 5555411 011222222 3344455556677
Q ss_pred HcCCc
Q 002217 176 SLGFS 180 (952)
Q Consensus 176 ~lgi~ 180 (952)
++|+.
T Consensus 126 a~G~d 130 (373)
T 3vgj_A 126 SCGMN 130 (373)
T ss_dssp HTTCC
T ss_pred HcCCC
Confidence 77763
No 70
>2dlc_X Tyrosyl-tRNA synthetase, cytoplasmic; tyrrs, ligase-tRNA complex; HET: 2MG OMG M2G PSU 6IA 5MC 5MU 1MA YMP; 2.40A {Saccharomyces cerevisiae}
Probab=86.76 E-value=0.26 Score=55.52 Aligned_cols=41 Identities=22% Similarity=0.237 Sum_probs=27.0
Q ss_pred CcEEEEcCCCCCCCCCCCCchhHHHHHHHHHHHHHHHcCCccccccc
Q 002217 94 PKFYVLDMFPYPSGAGLHVGHPLGYTATDILARLKRMQGYNVLHPMG 140 (952)
Q Consensus 94 ~kf~i~~~~Pypng~~lHiGH~~~~~~~Di~~Ry~r~~G~~V~~~~G 140 (952)
+++.++.|+= |+|. |||||+++.+. ..++++ .|+++++..|
T Consensus 38 ~p~~vy~G~~-PTG~-LHlG~~~~al~---~~~~~q-~g~~~ii~I~ 78 (394)
T 2dlc_X 38 RHLKLYWGTA-PTGR-PHCGYFVPMTK---LADFLK-AGCEVTVLLA 78 (394)
T ss_dssp SCCEEEEEEC-CCSC-CBGGGHHHHHH---HHHHHH-TTCEEEEEEC
T ss_pred CCeEEEEEeC-CCCC-ccHHHHHHHHH---HHHHHH-cCCcEEEEEc
Confidence 4455556643 3786 99999877543 445555 7888876665
No 71
>1j09_A Glutamyl-tRNA synthetase; glurs-ATP-Glu complex, riken structural genomics/proteomics initiative, RSGI, structural genomics, ligase; HET: GLU ATP; 1.80A {Thermus thermophilus} SCOP: a.97.1.1 c.26.1.1 PDB: 1n75_A* 1n77_A* 1n78_A* 2cuz_A* 2cv0_A* 2cv1_A* 2cv2_A* 2dxi_A* 1g59_A 1gln_A
Probab=86.20 E-value=0.39 Score=55.21 Aligned_cols=35 Identities=29% Similarity=0.357 Sum_probs=29.7
Q ss_pred cccccccCCCCCCChhhHHhh-hCchhhhhhhhhcCC
Q 002217 706 RAHKMSKSRGNVVNPDDVVTE-YGADSLRLYEMFMGP 741 (952)
Q Consensus 706 ~g~KMSKSkGNvV~P~eii~~-YGaDalRl~ll~~~~ 741 (952)
+|+||||++||. +..++.++ |-++++|-|++..+-
T Consensus 240 ~g~klSKR~g~~-~l~~~~~~G~~peal~~~l~~lG~ 275 (468)
T 1j09_A 240 DKTKISKRKSHT-SLDWYKAEGFLPEALRNYLCLMGF 275 (468)
T ss_dssp TSCBCCTTTSCC-BHHHHHHTTCCHHHHHHHHHHHSC
T ss_pred CCCccccccchh-hHHHHHHCCCCHHHHHHHHHHhcc
Confidence 379999999999 77888775 889999999987663
No 72
>1i6k_A TRPRS, tryptophanyl-tRNA synthetase; class I tRNA synthetase, AARS, induced FIT, ligase; HET: TYM; 1.72A {Geobacillus stearothermophilus} SCOP: c.26.1.1 PDB: 1i6l_A* 1i6m_A* 1m83_A* 1mau_A* 1maw_A* 1mb2_A* 2ov4_A* 3fhj_A* 3fi0_A* 1d2r_A 3u1v_A
Probab=85.79 E-value=0.67 Score=50.78 Aligned_cols=62 Identities=23% Similarity=0.423 Sum_probs=39.2
Q ss_pred CCCCCCCCchhHHHHHHHHHHHHHHHcCCcccccccccccChHHHHHHHHhCCCchHHHHHHHHHHHHHHHHcCCc
Q 002217 105 PSGAGLHVGHPLGYTATDILARLKRMQGYNVLHPMGWDAFGLPAEQYAIETGTHPKITTLRNINRFRTQLKSLGFS 180 (952)
Q Consensus 105 png~~lHiGH~~~~~~~Di~~Ry~r~~G~~V~~~~G~D~~Glpie~~a~~~g~~~~~~~~~~~~~~~~~l~~lgi~ 180 (952)
|+|. |||||..+.+.. +.+++. |+++.+..| |.|++-. . .++ +...++...+..++.++|+.
T Consensus 10 PTG~-lHlGn~vg~l~~--~~~lQ~--g~~~~~~Ia-D~ha~~~-~------~~~-e~i~~~~~~~~~~~la~Gld 71 (328)
T 1i6k_A 10 PSGV-ITIGNYIGALRQ--FVELQH--EYNCYFCIV-DQHAITV-W------QDP-HELRQNIRRLAALYLAVGID 71 (328)
T ss_dssp CCSC-CBHHHHHHTHHH--HHHHTT--TSEEEEEEC-HHHHTTS-C------CCH-HHHHHHHHHHHHHHHHTTCC
T ss_pred CCCc-ccHHHHHHHHHH--HHHHHc--CCcEEEEEe-CceeecC-C------CCH-HHHHHHHHHHHHHHHHhCCC
Confidence 4586 999999986532 333433 899876665 4444311 0 233 34566777888888889983
No 73
>3hv0_A Tryptophanyl-tRNA synthetase; tRNA-ligase, ATP-binding, aminoacyl-tRNA synthetase, ligase, nucleotide-binding; HET: TRP; 2.42A {Cryptosporidium parvum iowa II} SCOP: c.26.1.0
Probab=85.64 E-value=2.1 Score=47.98 Aligned_cols=78 Identities=18% Similarity=0.121 Sum_probs=49.0
Q ss_pred CCcEEEEcCCCCCCCCCCCCchhHHHHHHHHHHHHHHHcCCcccccccccccChHHHHHHHHh-CCCchHHHHHHHHHHH
Q 002217 93 KPKFYVLDMFPYPSGAGLHVGHPLGYTATDILARLKRMQGYNVLHPMGWDAFGLPAEQYAIET-GTHPKITTLRNINRFR 171 (952)
Q Consensus 93 k~kf~i~~~~Pypng~~lHiGH~~~~~~~Di~~Ry~r~~G~~V~~~~G~D~~Glpie~~a~~~-g~~~~~~~~~~~~~~~ 171 (952)
++++.++.|+=+..|. |||||..+.. .+.++|+.-|..|.+..| .+ + +.... ..+ .+.+.++...+.
T Consensus 72 g~~~~vy~G~~PTa~~-lHlGh~v~~~---~~~~lQ~~~~~~v~i~I~-----D~-~-~~~~r~~~~-~e~i~~~~~~~~ 139 (393)
T 3hv0_A 72 GELFYLYTGRGPSSES-LHVGHLVPFL---FTKYLQDTFKVPLVIQLT-----DD-E-KFIFKSNLT-LEETHNYAYENM 139 (393)
T ss_dssp TCCCEEEEEECCSSSS-CBSTTHHHHH---HHHHHHHHHCCCEEEEEC-----HH-H-HHHHCTTCC-HHHHHHHHHHHH
T ss_pred CCCeEEEeCCCCCCCC-ccHHHHHHHH---HHHHHHHhcCCCeEeecc-----Ch-H-HHhhccCCC-HHHHHHHHHHHH
Confidence 3456677776544466 9999966544 455677777877766443 33 1 22223 333 455667777888
Q ss_pred HHHHHcCCccc
Q 002217 172 TQLKSLGFSYD 182 (952)
Q Consensus 172 ~~l~~lgi~~D 182 (952)
.++.++|+..+
T Consensus 140 ~~~lA~GlDp~ 150 (393)
T 3hv0_A 140 KDIIACGFDPE 150 (393)
T ss_dssp HHHHTTCCCTT
T ss_pred HHHHHcCCCCc
Confidence 89989998544
No 74
>3i05_A Tryptophanyl-tRNA synthetase; APO tRNA-ligase, ATP-binding, aminoacyl-tRNA synthetase, LIG nucleotide-binding, protein biosynthesis; 2.80A {Trypanosoma brucei} SCOP: c.26.1.0
Probab=85.59 E-value=0.33 Score=54.48 Aligned_cols=76 Identities=17% Similarity=0.178 Sum_probs=47.8
Q ss_pred CCcEEEEcCCCCCCC-CCCCCchhHHHHHHHHHHHHHHHcCCcccccccccccChHHHHHHHHhCCCchHHHHHHHHHHH
Q 002217 93 KPKFYVLDMFPYPSG-AGLHVGHPLGYTATDILARLKRMQGYNVLHPMGWDAFGLPAEQYAIETGTHPKITTLRNINRFR 171 (952)
Q Consensus 93 k~kf~i~~~~Pypng-~~lHiGH~~~~~~~Di~~Ry~r~~G~~V~~~~G~D~~Glpie~~a~~~g~~~~~~~~~~~~~~~ 171 (952)
++++.++.|+= |+| . |||||..+. ..+.++|..-|..+.+..|=+++ +..... ..+.+.++...+.
T Consensus 76 ~~~~~vy~G~~-PTg~~-lHLGh~v~~---~~~~~lQ~~~~~~v~i~I~D~~~-------~l~~~~-~~e~i~~~~~~~~ 142 (395)
T 3i05_A 76 GQPFYLYTGRG-PSSES-MHMGHLIPF---MFTKWLQDSFRVPLVIQMTDDEK-------FYFRNI-PMEQVEAMTTENI 142 (395)
T ss_dssp TCCEEEEEEEC-CCSSC-CBGGGSHHH---HHHHHHHHHHTCCEEEEECHHHH-------HHHSCC-CHHHHHHHHHHHH
T ss_pred CCCeEEEEeec-CCCcc-chHHHHHHH---HHHHHHHHhcCCcEEEEEcchHH-------HhcCCC-CHHHHHHHHHHHH
Confidence 44567777754 566 5 999997664 34556777768888776554332 222233 3444566777778
Q ss_pred HHHHHcCCcc
Q 002217 172 TQLKSLGFSY 181 (952)
Q Consensus 172 ~~l~~lgi~~ 181 (952)
.++.++|+..
T Consensus 143 ~~~lA~GlDp 152 (395)
T 3i05_A 143 KDIIAMGFDP 152 (395)
T ss_dssp HHHHTTTCCT
T ss_pred HHHHHcCCCC
Confidence 8888888743
No 75
>2cya_A Tyrosyl-tRNA synthetase; tyrrs, aminoacylation, structural genomics, NPPSFA, national on protein structural and functional analyses; 2.20A {Aeropyrum pernix}
Probab=85.45 E-value=0.81 Score=50.88 Aligned_cols=74 Identities=15% Similarity=0.098 Sum_probs=45.0
Q ss_pred EEEEcCCCCCCCCCCCCchhHHHHHHHHHHHHHHHcCCcccccccccccChHHHHHHHHhCCCchHHHHHHHHHHHHHHH
Q 002217 96 FYVLDMFPYPSGAGLHVGHPLGYTATDILARLKRMQGYNVLHPMGWDAFGLPAEQYAIETGTHPKITTLRNINRFRTQLK 175 (952)
Q Consensus 96 f~i~~~~Pypng~~lHiGH~~~~~~~Di~~Ry~r~~G~~V~~~~G~D~~Glpie~~a~~~g~~~~~~~~~~~~~~~~~l~ 175 (952)
+.++.|+ -|+|. ||||| ++-+.. +.++++ .|+++.+..| |.|++-. ...|.++ +...++...+...+.
T Consensus 36 ~~iy~G~-~PTg~-lHlG~-l~~l~~--~~~lQ~-~G~~~~~~ia-D~~a~~~----~ps~~~~-e~i~~~~~~~~~~~l 103 (364)
T 2cya_A 36 IKGYIGY-EPSGV-AHIGW-LVWMYK--VKDLVE-AGVDFSVLEA-TWHAYIN----DKLGGDM-DLIRAAARIVRRVME 103 (364)
T ss_dssp CEEEEEE-CCCSS-CBTHH-HHHHHH--HHHHHH-TTCEEEEEEC-HHHHHHT----TGGGGCH-HHHHHHHHHHHHHHH
T ss_pred CEEEecc-CCCCC-ccHhH-HHHHHH--HHHHHH-CCCCEEEEEe-CcchhhC----CCCCCCH-HHHHHHHHHHHHHHH
Confidence 4455564 34687 99999 654432 455554 5999887776 4444411 1112233 345566677888999
Q ss_pred HcCCcc
Q 002217 176 SLGFSY 181 (952)
Q Consensus 176 ~lgi~~ 181 (952)
++|+..
T Consensus 104 a~G~dp 109 (364)
T 2cya_A 104 AAGVPV 109 (364)
T ss_dssp HTTCCG
T ss_pred HhCCCc
Confidence 999843
No 76
>3al0_C Glutamyl-tRNA(Gln) amidotransferase subunit C, GL tRNA synthetase 2; protein-RNA complex, ligase-RNA complex; HET: GSU; 3.37A {Thermotoga maritima}
Probab=84.36 E-value=0.61 Score=55.20 Aligned_cols=35 Identities=20% Similarity=0.226 Sum_probs=29.7
Q ss_pred cccccccCCCCCCChhhHHhh-hCchhhhhhhhhcCC
Q 002217 706 RAHKMSKSRGNVVNPDDVVTE-YGADSLRLYEMFMGP 741 (952)
Q Consensus 706 ~g~KMSKSkGNvV~P~eii~~-YGaDalRl~ll~~~~ 741 (952)
+|.||||++|| ++..++.++ |-++++|-|++..+-
T Consensus 356 ~g~KLSKR~g~-~~l~~~~~~G~~peal~~~l~~lG~ 391 (592)
T 3al0_C 356 DRTPLSKRHGA-TSVEHFRREGILSRALMNYLALLGW 391 (592)
T ss_dssp TSSBCCTTTCS-SBHHHHHHTTCCHHHHHHHHTTTTB
T ss_pred CCCcccccCCc-ccHHHHHHCCCCHHHHHHHHHHhCC
Confidence 48999999999 588888874 889999999987653
No 77
>1wz2_A Leucyl-tRNA synthetase; ligase, riken structural genomics/proteomics initiativ structural genomics, ligase-RNA complex; 3.21A {Pyrococcus horikoshii}
Probab=84.18 E-value=0.36 Score=60.79 Aligned_cols=93 Identities=17% Similarity=0.181 Sum_probs=61.5
Q ss_pred hhHHHHHHHHHHHHHHCCceeeeccccccCCCC------------CcccCchhhc-cCccccCCCCeEEe-eccccchhh
Q 002217 192 PAYYKWTQWIFLQLLKRGLAYQAEVPVNWCPAL------------GTVLANEEVV-DGVSERGGHPVIRK-PMRQWMLKI 257 (952)
Q Consensus 192 ~~~~~~v~~~f~~L~~kGliy~~~~~v~wc~~~------------~t~ls~~Ev~-~~~~~~~~~~~~~~-~~~~~~~~i 257 (952)
+.+.+.++.+|.+++.+|.++-+.... .+..+ +..+...++. .+.|++||.+++.+ ...|||+++
T Consensus 391 ~~l~~a~~~~y~~~~~~G~~~~g~~~G-~~v~ea~~~i~~~L~~~g~l~~~~~~~~~p~~~R~g~~~i~~~~~~qWFi~~ 469 (967)
T 1wz2_A 391 EKLEQATKTIYKAEYHKGIFKVPPYEG-KPVQEVKEAIAKEMLEKGIAEIMYEFAEKNVISRFGNRAVIKIIHDQWFIDY 469 (967)
T ss_dssp TTHHHHTTHHHHHHHHSCBCCSSSSCS-SBHHHHTTTTHHHHHHHTSEEECCEESSSCCBCSSSSBCEECCCSSCEEEES
T ss_pred HHHHHHHHHhhhccccCceEeccCcCC-cCHHHHHHHHHHHHHhCCCceEEEecCCCceECCCCCEEEEeccCCccceec
Confidence 456677777777777777765211100 01100 0000111221 46788999999888 689999999
Q ss_pred h--hhhhHhhccCCCCC-CchHHHHHHHhhh
Q 002217 258 T--EYADRLLDDLDDLD-WPESVKEMQRNWI 285 (952)
Q Consensus 258 ~--~y~~~l~~~l~~~~-~p~~~~~~~~~~i 285 (952)
+ ++++.+++.+++.. +|+..++...+|+
T Consensus 470 ~~~~~k~~~l~~~~~~~~~P~~~~~~~~~~l 500 (967)
T 1wz2_A 470 GNPEWKEKARKALERMKILPETRRAQFEAII 500 (967)
T ss_dssp CCTTHHHHHHHHHTTSCEESSTTHHHHHHHH
T ss_pred CchHHHHHHHHhhhccEeeCccccchHHHhh
Confidence 8 59999999998887 4888888888887
No 78
>3hzr_A Tryptophanyl-tRNA synthetase; APO tRNA-ligase, structural genomics, medical structural GEN pathogenic protozoa, MSGPP, ligase; 3.00A {Entamoeba histolytica}
Probab=83.96 E-value=2.3 Score=47.50 Aligned_cols=77 Identities=13% Similarity=0.158 Sum_probs=49.6
Q ss_pred CCcEEEEcCCCCCCCCCCCCchhHHHHHHHHHHHHHHHcCCcccccccccccChHHHHHHHHhCCCchHHHHHHHHHHHH
Q 002217 93 KPKFYVLDMFPYPSGAGLHVGHPLGYTATDILARLKRMQGYNVLHPMGWDAFGLPAEQYAIETGTHPKITTLRNINRFRT 172 (952)
Q Consensus 93 k~kf~i~~~~Pypng~~lHiGH~~~~~~~Di~~Ry~r~~G~~V~~~~G~D~~Glpie~~a~~~g~~~~~~~~~~~~~~~~ 172 (952)
++++.++.|+ -|+|. |||||..+. .+..+++..-|..+.+..|-++ +......+ .+-+.++...+..
T Consensus 80 ~~~~~vysG~-~PTG~-lHLGh~v~~---~~~~~lQ~~~g~~v~i~I~D~~-------a~~~r~~~-~e~i~~~~~~~~~ 146 (386)
T 3hzr_A 80 KKPTFIFIQK-YPQKE-VALEEYITL---EFARYLQDAFNIQVIIQILDDI-------KVLNREAT-INEASKMSNDLMK 146 (386)
T ss_dssp TCCEEEEEEE-CCCSS-CBGGGHHHH---HHHHHHHHHHCCEEEEEECHHH-------HHHTTSCC-HHHHHHHHHHHHH
T ss_pred CCCeEEEecc-CCCCC-ccHHHHHHH---HHHHHHHHhcCCeEEEEeCchH-------HhhcCCCC-HHHHHHHHHHHHH
Confidence 4457777775 47898 999997664 3345567766888877744321 11112233 3446667778888
Q ss_pred HHHHcCCccc
Q 002217 173 QLKSLGFSYD 182 (952)
Q Consensus 173 ~l~~lgi~~D 182 (952)
++.++|+..+
T Consensus 147 ~~lA~GlDp~ 156 (386)
T 3hzr_A 147 YILAFGFNED 156 (386)
T ss_dssp HHHHTCCCGG
T ss_pred HHHHcCCCCc
Confidence 8999999654
No 79
>2ja2_A Glutamyl-tRNA synthetase; non-discriminating glutamyl-tRNA aminoacylation, protein biosynthesis, aminoacyl-tRNA synthetase, ligase; 1.65A {Mycobacterium tuberculosis} PDB: 3pny_A 3pnv_A
Probab=83.79 E-value=0.85 Score=52.73 Aligned_cols=35 Identities=20% Similarity=0.152 Sum_probs=29.5
Q ss_pred cccccccCCCCCCChhhHHhh-hCchhhhhhhhhcCC
Q 002217 706 RAHKMSKSRGNVVNPDDVVTE-YGADSLRLYEMFMGP 741 (952)
Q Consensus 706 ~g~KMSKSkGNvV~P~eii~~-YGaDalRl~ll~~~~ 741 (952)
+|.||||++|++ +..++.+. |.++++|-|++..+-
T Consensus 254 ~g~KLSKR~g~~-~l~~~r~~G~~peAl~~~l~~lG~ 289 (498)
T 2ja2_A 254 GTKKLSKRDPQS-NLFAHRDRGFIPEGLLNYLALLGW 289 (498)
T ss_dssp SSSBCCTTSGGG-BHHHHHHHTCCHHHHHHHHHTSSC
T ss_pred CCCcccccCCcc-cHHHHHhCCCCHHHHHHHHHHhCC
Confidence 379999999994 78888775 899999999987653
No 80
>3afh_A Glutamyl-tRNA synthetase 2; protein-substrate complex, aminoacyl-tRNA synthetase, ATP-binding, ligase, nucleotide-binding; HET: GSU; 2.00A {Thermotoga maritima} PDB: 3akz_B*
Probab=83.66 E-value=0.95 Score=52.23 Aligned_cols=35 Identities=20% Similarity=0.226 Sum_probs=29.5
Q ss_pred cccccccCCCCCCChhhHHhh-hCchhhhhhhhhcCC
Q 002217 706 RAHKMSKSRGNVVNPDDVVTE-YGADSLRLYEMFMGP 741 (952)
Q Consensus 706 ~g~KMSKSkGNvV~P~eii~~-YGaDalRl~ll~~~~ 741 (952)
+|+||||++|+ ++..++.++ |-++++|-|++..+-
T Consensus 252 ~g~KLSKR~g~-~~l~~~r~~G~~peal~n~l~~lG~ 287 (488)
T 3afh_A 252 DRTPLSKRHGA-TSVEHFRREGILSRALMNYLALLGW 287 (488)
T ss_dssp TSSBCCTTTSC-CBHHHHHHHTCCHHHHHHHHHHTTC
T ss_pred CCCcccCcCCc-ccHHHHHHCCCCHHHHHHHHHHhCC
Confidence 37999999999 588888874 889999999987653
No 81
>2ip1_A Tryptophanyl-tRNA synthetase; rossmann fold, structural genomics, PSI-2, protein structure initiative; HET: PG4; 1.80A {Saccharomyces cerevisiae} PDB: 3kt0_A* 3kt3_A* 3kt6_A* 3kt8_A*
Probab=83.64 E-value=0.34 Score=55.07 Aligned_cols=43 Identities=14% Similarity=0.251 Sum_probs=25.1
Q ss_pred CcEEEEcCCCCCCCCCCCCchhHHHHHHHHHHHHHHHcCCccccccc
Q 002217 94 PKFYVLDMFPYPSGAGLHVGHPLGYTATDILARLKRMQGYNVLHPMG 140 (952)
Q Consensus 94 ~kf~i~~~~Pypng~~lHiGH~~~~~~~Di~~Ry~r~~G~~V~~~~G 140 (952)
+++.++.|+=+..|. |||||....+. +.|++...|+.+.+..|
T Consensus 101 ~~~~vy~G~dPTag~-LHLGh~v~~~~---l~~lQ~~~g~~~i~lI~ 143 (432)
T 2ip1_A 101 KPFFLYTGRGPSSDS-MHLGHMIPFVF---TKWLQEVFDVPLVIELT 143 (432)
T ss_dssp CCCEEEEEECCCSSC-CBGGGHHHHHH---HHHHHHHHTCCEEEEEC
T ss_pred CCeEEEEeecCCCCC-ccHHHHHHHHH---HHHHHHHcCCeEEEEEe
Confidence 345555665434465 78888775432 33455546777666666
No 82
>2cyb_A Tyrosyl-tRNA synthetase; rossmann-fold, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: TYR; 1.80A {Archaeoglobus fulgidus}
Probab=82.77 E-value=1.9 Score=47.02 Aligned_cols=29 Identities=24% Similarity=0.267 Sum_probs=25.3
Q ss_pred cccccccCCCCCCChhhHHhhhCchhhhhhhhhc
Q 002217 706 RAHKMSKSRGNVVNPDDVVTEYGADSLRLYEMFM 739 (952)
Q Consensus 706 ~g~KMSKSkGNvV~P~eii~~YGaDalRl~ll~~ 739 (952)
+|+|||||.||.|.+.+ .+|++|-.++.+
T Consensus 211 ~G~KMSKS~~n~I~l~d-----~p~~i~~Ki~~a 239 (323)
T 2cyb_A 211 DGQKMSSSKGNYISVRD-----PPEEVERKIRKA 239 (323)
T ss_dssp TSSBCCTTTTCSCBTTC-----CHHHHHHHHHTS
T ss_pred CCCcccCCcCceeCCCC-----CHHHHHHHHHhc
Confidence 37999999999999987 499999998864
No 83
>3jxe_A Tryptophanyl-tRNA synthetase; adenosine triphosphate, rossmann fold, crystallography, X-RAY, P. horikoshii, aminoacyl-tRNA synthetase; HET: TYM; 3.00A {Pyrococcus horikoshii}
Probab=82.68 E-value=2 Score=48.13 Aligned_cols=78 Identities=22% Similarity=0.251 Sum_probs=49.3
Q ss_pred CCcEEEEcCCCCCCCCCCCCchhHHHHHHHHHHHHHHHcCCcccccccccccChHHHHHHHHhCCCchHHHHHHHHHHHH
Q 002217 93 KPKFYVLDMFPYPSGAGLHVGHPLGYTATDILARLKRMQGYNVLHPMGWDAFGLPAEQYAIETGTHPKITTLRNINRFRT 172 (952)
Q Consensus 93 k~kf~i~~~~Pypng~~lHiGH~~~~~~~Di~~Ry~r~~G~~V~~~~G~D~~Glpie~~a~~~g~~~~~~~~~~~~~~~~ 172 (952)
+++++++.|+= |+|. |||||..+... ..+++...|+++.+..| |.|++-. ..+.+ .+...++...+..
T Consensus 71 ~~p~~i~sG~~-PTG~-lHLGh~v~~~~---~~~lQ~~~g~~~~i~Ia-D~ha~~~-----~~~~~-~e~i~~~~~~~~~ 138 (392)
T 3jxe_A 71 GRGFFLYTGRG-PSGP-MHIGHIIPFFA---TKWLQEKFGVNLYIQIT-DDEKFLF-----KENLT-FDDTKRWAYDNIL 138 (392)
T ss_dssp TCCCEEEEEEC-CSSC-CBHHHHHHHHH---HHHHHHHHCCEEEEEEC-HHHHHHH-----CSSCC-HHHHHHHHHHHHH
T ss_pred CCCeEEEeccC-CCCc-hhHHHHHHHHH---HHHHHHhcCCceEEEec-chHHhhc-----CCCCC-HHHHHHHHHHHHH
Confidence 34456666654 4487 99999887642 23345557998888877 5554311 11233 3445666777888
Q ss_pred HHHHcCCccc
Q 002217 173 QLKSLGFSYD 182 (952)
Q Consensus 173 ~l~~lgi~~D 182 (952)
++.++|+..+
T Consensus 139 ~~lA~GlDp~ 148 (392)
T 3jxe_A 139 DIIAVGFDPD 148 (392)
T ss_dssp HHHTTCCCTT
T ss_pred HHHHhCcCcc
Confidence 8899998654
No 84
>2cya_A Tyrosyl-tRNA synthetase; tyrrs, aminoacylation, structural genomics, NPPSFA, national on protein structural and functional analyses; 2.20A {Aeropyrum pernix}
Probab=82.51 E-value=0.61 Score=51.88 Aligned_cols=27 Identities=33% Similarity=0.147 Sum_probs=18.1
Q ss_pred ccccccC-CCCCCChhhHHhhhCchhhhhhhhh
Q 002217 707 AHKMSKS-RGNVVNPDDVVTEYGADSLRLYEMF 738 (952)
Q Consensus 707 g~KMSKS-kGNvV~P~eii~~YGaDalRl~ll~ 738 (952)
|+||||| .+|.|...|= ++.++=.++.
T Consensus 236 g~KMSKS~~~~~I~L~d~-----p~~i~~Ki~~ 263 (364)
T 2cya_A 236 EVKMSKSKPETAVFVVDS-----DDDIRRKIRK 263 (364)
T ss_dssp -CBCCSSSGGGSCBTTCC-----HHHHHHHHHT
T ss_pred ccccCCCCCCCEeeccCC-----HHHHHHHHHh
Confidence 7899999 6888876553 5555555543
No 85
>3a04_A Tryptophanyl-tRNA synthetase; ligase, aminoacyl-tRNA synthetase, ATP-binding, cytoplasm, nucleotide-binding, protein biosynthesis; 1.97A {Aeropyrum pernix} PDB: 3a05_A*
Probab=82.20 E-value=1.3 Score=49.33 Aligned_cols=77 Identities=21% Similarity=0.336 Sum_probs=48.4
Q ss_pred CCcEEEEcCCCCCCCCCCCCchhHHHHHHHHHHHHHHHcCCcccccccccccChHHHHHHHHhCCCchHHHHHHHHHHHH
Q 002217 93 KPKFYVLDMFPYPSGAGLHVGHPLGYTATDILARLKRMQGYNVLHPMGWDAFGLPAEQYAIETGTHPKITTLRNINRFRT 172 (952)
Q Consensus 93 k~kf~i~~~~Pypng~~lHiGH~~~~~~~Di~~Ry~r~~G~~V~~~~G~D~~Glpie~~a~~~g~~~~~~~~~~~~~~~~ 172 (952)
+++|+|++|. -|+|. |||||..+.. -.+++...|++|.+..+ |.|.+-. ......+....++..+..
T Consensus 68 gk~~~v~sG~-~PTG~-lHLGhyv~~~----~~~~lq~~~~~~~~~Ia-D~ha~t~------~~~~~~e~~r~~~~~~~~ 134 (372)
T 3a04_A 68 GERVAVLTGF-MPSGK-FHFGHKLTVD----QLIYLQKNGFKVFVAIA-DAEAFAV------RRIGREEAVRIAVEEYIA 134 (372)
T ss_dssp TCCCEEEEEE-CCCSC-CBHHHHHHHH----HHHHHHHTTCEEEEEEC-HHHHHHT------TCCCHHHHHHHHHHTTHH
T ss_pred CCCCEEEeCc-CCCcH-hHHHHHHHHH----HHHHHHhCCCeEEEEEe-cchhhcc------CCCCCHHHHHHHHHHHHH
Confidence 4556777774 35898 9999988532 23444456999876654 4443311 122233445666777788
Q ss_pred HHHHcCCccc
Q 002217 173 QLKSLGFSYD 182 (952)
Q Consensus 173 ~l~~lgi~~D 182 (952)
++-++|+..+
T Consensus 135 ~~lA~GlDP~ 144 (372)
T 3a04_A 135 NMIALGLDPK 144 (372)
T ss_dssp HHHHHTCCTT
T ss_pred HHHHcCCChH
Confidence 8889999665
No 86
>2cyc_A Tyrosyl-tRNA synthetase; tyrosine, tyrrs, aminoacylation, structural genomics; HET: TYR; 2.20A {Pyrococcus horikoshii}
Probab=81.93 E-value=0.68 Score=51.69 Aligned_cols=73 Identities=18% Similarity=0.155 Sum_probs=38.2
Q ss_pred EEEcCCCCCCCCCCCCchhHHHHHHHHHHHHHHHcCCcccccccccccChHHHHHHHHhCCCchHHHHHHH-HHHH----
Q 002217 97 YVLDMFPYPSGAGLHVGHPLGYTATDILARLKRMQGYNVLHPMGWDAFGLPAEQYAIETGTHPKITTLRNI-NRFR---- 171 (952)
Q Consensus 97 ~i~~~~Pypng~~lHiGH~~~~~~~Di~~Ry~r~~G~~V~~~~G~D~~Glpie~~a~~~g~~~~~~~~~~~-~~~~---- 171 (952)
.++.|+ -|+|. |||||.+.-+. .+.++++ .|+++.+..| |.|++-. .+.|.+++ ...++. ..+.
T Consensus 35 ~vy~G~-~PTg~-lHlG~yl~~l~--~~~~lQ~-~G~~~~~~ia-D~ha~~~----~~~g~~~e-~i~~~~~~~~~~~~~ 103 (375)
T 2cyc_A 35 QHYIGF-EISGY-IHLGTGLMAGA--KIADFQK-AGIKTRVFLA-DWHSWIN----DKLGGDLE-VIQEVALKYFKVGME 103 (375)
T ss_dssp BEEEEE-CCCSC-CBHHHHHHHHH--HHHHHHH-TTCBCEEEEC-HHHHHHT----TGGGGCHH-HHHHHHHHTHHHHHH
T ss_pred EEEeCC-CCCCC-cCchHHHHHHH--HHHHHHH-CCCcEEEEec-CcEEEcC----CCCCCCHH-HHHHHHHHHHHHHHH
Confidence 344453 25576 99999555332 3556665 5888876665 2233211 11232332 233333 3344
Q ss_pred HHHHHcCCc
Q 002217 172 TQLKSLGFS 180 (952)
Q Consensus 172 ~~l~~lgi~ 180 (952)
.++.++|+.
T Consensus 104 ~~~la~G~d 112 (375)
T 2cyc_A 104 KSIEVMGGD 112 (375)
T ss_dssp HHHHHTTCC
T ss_pred HHHHHhCCC
Confidence 777788873
No 87
>2zp1_A Tyrosyl-tRNA synthetase; tRNA synthetases class I, ligase, aminoacyl-tRNA synthetase, ATP-binding, cytoplasm, nucleotide-binding; HET: IYR; 1.70A {Methanocaldococcus jannaschii} PDB: 1zh6_A* 1j1u_A* 1u7d_A 2q1g_A* 2pxh_A* 1zh0_A* 2q1i_A* 2ag6_A* 3qe4_A* 3d6u_A* 3d6v_A* 1u7x_A 3n2y_A* 2hgz_A*
Probab=81.81 E-value=1.3 Score=48.21 Aligned_cols=16 Identities=50% Similarity=0.723 Sum_probs=13.5
Q ss_pred c-cccccCCCCCCChhh
Q 002217 707 A-HKMSKSRGNVVNPDD 722 (952)
Q Consensus 707 g-~KMSKSkGNvV~P~e 722 (952)
| +|||||.||.|...+
T Consensus 201 G~~KMSKS~~~~I~L~d 217 (314)
T 2zp1_A 201 GEGKMSSSKGNFIAVDD 217 (314)
T ss_dssp SSSBCCTTTTCSCBTTC
T ss_pred cccccCCCCcceecCCC
Confidence 5 799999999987654
No 88
>3jxe_A Tryptophanyl-tRNA synthetase; adenosine triphosphate, rossmann fold, crystallography, X-RAY, P. horikoshii, aminoacyl-tRNA synthetase; HET: TYM; 3.00A {Pyrococcus horikoshii}
Probab=81.41 E-value=0.66 Score=51.97 Aligned_cols=19 Identities=5% Similarity=-0.164 Sum_probs=12.8
Q ss_pred ceeEecCchhhHHHHHHHHH
Q 002217 603 VDVYVGGAEHAVLHLLYARF 622 (952)
Q Consensus 603 vDlyv~G~D~~~~HLly~Rf 622 (952)
+|+..+|.||- .|+..+|=
T Consensus 208 a~~vpvG~DQ~-~hl~l~Rd 226 (392)
T 3jxe_A 208 RCLIPAAIDQD-PYWRLQRD 226 (392)
T ss_dssp CEEEEEEGGGH-HHHHHHHH
T ss_pred CceeecccchH-HHHHHHHH
Confidence 78899999994 34333333
No 89
>1r6t_A Tryptophanyl-tRNA synthetase; class IC tRNA synthetase, rossmann fold catalytical domain, recognition domain, bound Trp-AMP, ligase; HET: TYM; 2.10A {Homo sapiens} SCOP: a.16.1.3 c.26.1.1 PDB: 2azx_A* 2quh_A* 2qui_A* 2quj_A* 2quk_A
Probab=81.31 E-value=0.71 Score=53.12 Aligned_cols=14 Identities=36% Similarity=0.235 Sum_probs=11.5
Q ss_pred cccccCCCC-CCChh
Q 002217 708 HKMSKSRGN-VVNPD 721 (952)
Q Consensus 708 ~KMSKSkGN-vV~P~ 721 (952)
.|||||.+| .|...
T Consensus 348 ~KMSKS~~nsaI~L~ 362 (477)
T 1r6t_A 348 TKMSASDPNSSIFLT 362 (477)
T ss_dssp EECCTTSTTCCCBTT
T ss_pred cccCCCCCCCceeec
Confidence 799999999 67643
No 90
>1r6u_A Tryptophanyl-tRNA synthetase; class IC tRNA synthetase, rossmann fold catalytic domain, AN recognition domain, bound Trp-AMP, ligase; HET: TYM; 2.00A {Homo sapiens} SCOP: c.26.1.1 PDB: 1ulh_A 2dr2_A* 2ake_A* 1o5t_A
Probab=81.21 E-value=0.74 Score=52.28 Aligned_cols=15 Identities=40% Similarity=0.324 Sum_probs=12.0
Q ss_pred cccccCCCC-CCChhh
Q 002217 708 HKMSKSRGN-VVNPDD 722 (952)
Q Consensus 708 ~KMSKSkGN-vV~P~e 722 (952)
.|||||.+| .|...+
T Consensus 301 ~KMSKS~~nsaI~L~D 316 (437)
T 1r6u_A 301 TKMSASDPNSSIFLTD 316 (437)
T ss_dssp EECCTTSSSSCCBTTC
T ss_pred cccCCCCCCCeeeccC
Confidence 899999999 676443
No 91
>1i6k_A TRPRS, tryptophanyl-tRNA synthetase; class I tRNA synthetase, AARS, induced FIT, ligase; HET: TYM; 1.72A {Geobacillus stearothermophilus} SCOP: c.26.1.1 PDB: 1i6l_A* 1i6m_A* 1m83_A* 1mau_A* 1maw_A* 1mb2_A* 2ov4_A* 3fhj_A* 3fi0_A* 1d2r_A 3u1v_A
Probab=80.00 E-value=1.2 Score=48.83 Aligned_cols=23 Identities=17% Similarity=0.185 Sum_probs=16.7
Q ss_pred CCceeEecCchhhHHHHHHHHHHH
Q 002217 601 SPVDVYVGGAEHAVLHLLYARFWH 624 (952)
Q Consensus 601 ~PvDlyv~G~D~~~~HLly~Rfw~ 624 (952)
|-+|+.++|.||. .|+..+|=..
T Consensus 136 ~~~~~vpvG~DQ~-~~iel~Rdia 158 (328)
T 1i6k_A 136 YNTDIVPVGEDQK-QHIELTRDLA 158 (328)
T ss_dssp TTCSEEECCGGGH-HHHHHHHHHH
T ss_pred hCCCEEecccchH-HHHHHHHHHH
Confidence 5799999999995 3555555553
No 92
>2ip1_A Tryptophanyl-tRNA synthetase; rossmann fold, structural genomics, PSI-2, protein structure initiative; HET: PG4; 1.80A {Saccharomyces cerevisiae} PDB: 3kt0_A* 3kt3_A* 3kt6_A* 3kt8_A*
Probab=79.92 E-value=2 Score=48.82 Aligned_cols=15 Identities=33% Similarity=0.310 Sum_probs=6.5
Q ss_pred cccccCCCC-CCChhh
Q 002217 708 HKMSKSRGN-VVNPDD 722 (952)
Q Consensus 708 ~KMSKSkGN-vV~P~e 722 (952)
.|||||.+| .|...+
T Consensus 294 ~KMSKS~~nsaI~L~d 309 (432)
T 2ip1_A 294 TKMSASDDTTAIFMTD 309 (432)
T ss_dssp ------CGGGCCBTTC
T ss_pred cccCCCCCCCeEeccC
Confidence 899999999 776544
No 93
>3foc_A Tryptophanyl-tRNA synthetase; structural genomics, giardiasi aminoacyl-tRNA synthetase, ligase; 2.09A {Giardia lamblia atcc 50803}
Probab=79.38 E-value=3.6 Score=46.76 Aligned_cols=79 Identities=19% Similarity=0.185 Sum_probs=50.0
Q ss_pred CCcEEEEcCCCCCCCCCCCCchhHHHHHHHHHHHHHHHcCCcccccccccccChHHHHHHHHhCCCchHHHHHHHHHHHH
Q 002217 93 KPKFYVLDMFPYPSGAGLHVGHPLGYTATDILARLKRMQGYNVLHPMGWDAFGLPAEQYAIETGTHPKITTLRNINRFRT 172 (952)
Q Consensus 93 k~kf~i~~~~Pypng~~lHiGH~~~~~~~Di~~Ry~r~~G~~V~~~~G~D~~Glpie~~a~~~g~~~~~~~~~~~~~~~~ 172 (952)
++++.++.|+=+..|. |||||..+.. .+.|+|..-|..+.+..| .| +....+...+ .+.+.++...+..
T Consensus 89 g~p~~vytG~dPTags-LHLGH~v~~~---~l~~lQ~~~g~~v~I~Ig-----D~-~a~~~r~~lt-~E~I~~n~~~~~~ 157 (451)
T 3foc_A 89 GHPIYIYTGRGPSSGA-LHLGHLLPFI---FTKYLQDAFKCYVVIQIT-----DD-EKFLRNRSLS-YAEVDSYTRENIK 157 (451)
T ss_dssp TCCEEEEEEECCCSSC-CBHHHHHHHH---HHHHHHHHHTCEEEEEEC-----HH-HHHHHCTTCC-HHHHHHHHHHHHH
T ss_pred CCCeEEEecCCCCCCC-ccHHHHHHHH---HHHHHHHccCceEEEEee-----Cc-HHhhcccCCC-HHHHHHHHHHHHH
Confidence 4567788887545576 9999976643 345577776887777544 33 1111111333 4556777778888
Q ss_pred HHHHcCCccc
Q 002217 173 QLKSLGFSYD 182 (952)
Q Consensus 173 ~l~~lgi~~D 182 (952)
++.++|+..+
T Consensus 158 ~~lA~GlDpe 167 (451)
T 3foc_A 158 DIIACGFDPD 167 (451)
T ss_dssp HHHTTTCCGG
T ss_pred HHHHcCCCCC
Confidence 8999998543
No 94
>2j5b_A Tyrosyl-tRNA synthetase; ligase, protein biosynthesis, ATP-binding; HET: TYE; 2.20A {Acanthamoeba polyphaga mimivirus}
Probab=79.08 E-value=0.89 Score=50.24 Aligned_cols=76 Identities=17% Similarity=0.176 Sum_probs=43.1
Q ss_pred cEEEEcCCCCCCCCCCCCchhHHHHHHHHHHHHHHHcCCcccccccccccChHHHHHHHHhCCCchHHHHHHHHHHHHHH
Q 002217 95 KFYVLDMFPYPSGAGLHVGHPLGYTATDILARLKRMQGYNVLHPMGWDAFGLPAEQYAIETGTHPKITTLRNINRFRTQL 174 (952)
Q Consensus 95 kf~i~~~~Pypng~~lHiGH~~~~~~~Di~~Ry~r~~G~~V~~~~G~D~~Glpie~~a~~~g~~~~~~~~~~~~~~~~~l 174 (952)
++.++.|+= |+|. ||+||.+.-+ -.+.++++ .|+++.+..| |.|++-. ...|.+ .+...++...+.+++
T Consensus 40 ~~~vy~G~~-PTg~-lHlGhyl~~l--~~~~~lQ~-~G~~~~~~i~-D~~a~~~----~~~~~~-~e~i~~~~~~~~~~~ 108 (348)
T 2j5b_A 40 IFTAYNGFE-PSGR-IHIAQALITV--MNTNNMIE-CGGQMIIYIA-DWFAKMN----LKMNGD-INKIRELGRYFIEVF 108 (348)
T ss_dssp CEEEEEEEC-CCSS-CBHHHHHHHH--HHHHHHHH-TTEEEEEEEC-HHHHHHT----TGGGGC-HHHHHHHHHHHHHHH
T ss_pred CCEEEeccC-CCCC-CchhHHHHHH--HHHHHHHH-cCCcEEEEec-cchhhhC----CCCCCC-HHHHHHHHHHHHHHH
Confidence 345555642 4486 9999944432 23556665 4888876665 2233211 111222 344566777777788
Q ss_pred HHcCCcc
Q 002217 175 KSLGFSY 181 (952)
Q Consensus 175 ~~lgi~~ 181 (952)
.++|+..
T Consensus 109 la~Gldp 115 (348)
T 2j5b_A 109 KACGINL 115 (348)
T ss_dssp HHTTCCG
T ss_pred HHhcCCc
Confidence 8888744
No 95
>2el7_A Tryptophanyl-tRNA synthetase; aminoacyl-tRNA synthetase, translation, structural GEN NPPSFA; 2.50A {Thermus thermophilus}
Probab=78.97 E-value=1.9 Score=47.41 Aligned_cols=28 Identities=29% Similarity=0.233 Sum_probs=21.2
Q ss_pred cc-cccccCCCCCCChhhHHhhhCchhhhhhhhh
Q 002217 706 RA-HKMSKSRGNVVNPDDVVTEYGADSLRLYEMF 738 (952)
Q Consensus 706 ~g-~KMSKSkGNvV~P~eii~~YGaDalRl~ll~ 738 (952)
+| +|||||.+|.|...+= ++.++=.++.
T Consensus 191 dG~~KMSKS~~n~I~L~d~-----p~~i~~Ki~~ 219 (337)
T 2el7_A 191 DGKAKMSKSLGNTIGLLEP-----EESIWQKIQH 219 (337)
T ss_dssp TSSSBCCTTTTCCCBSSSC-----HHHHHHHHHT
T ss_pred CCccccCCCCCCeeeCcCC-----HHHHHHHHHh
Confidence 36 8999999999877652 6666666664
No 96
>3hv0_A Tryptophanyl-tRNA synthetase; tRNA-ligase, ATP-binding, aminoacyl-tRNA synthetase, ligase, nucleotide-binding; HET: TRP; 2.42A {Cryptosporidium parvum iowa II} SCOP: c.26.1.0
Probab=78.47 E-value=0.85 Score=51.14 Aligned_cols=13 Identities=38% Similarity=0.238 Sum_probs=3.0
Q ss_pred cccccCCCC-CCCh
Q 002217 708 HKMSKSRGN-VVNP 720 (952)
Q Consensus 708 ~KMSKSkGN-vV~P 720 (952)
.|||||.+| .|..
T Consensus 265 ~KMSKS~~nsaI~L 278 (393)
T 3hv0_A 265 TKMSASVQNSSIFV 278 (393)
T ss_dssp --------CCCCBT
T ss_pred cCCCCCCCCCeEec
Confidence 799999998 6654
No 97
>1r6t_A Tryptophanyl-tRNA synthetase; class IC tRNA synthetase, rossmann fold catalytical domain, recognition domain, bound Trp-AMP, ligase; HET: TYM; 2.10A {Homo sapiens} SCOP: a.16.1.3 c.26.1.1 PDB: 2azx_A* 2quh_A* 2qui_A* 2quj_A* 2quk_A
Probab=78.20 E-value=2.4 Score=48.79 Aligned_cols=77 Identities=18% Similarity=0.163 Sum_probs=47.8
Q ss_pred CCcEEEEcCCCCCCCCCCCCchhHHHHHHHHHHHHHHHcCCcccccccccccChHHHHHHHHhCCCchHHHHHHHHHHHH
Q 002217 93 KPKFYVLDMFPYPSGAGLHVGHPLGYTATDILARLKRMQGYNVLHPMGWDAFGLPAEQYAIETGTHPKITTLRNINRFRT 172 (952)
Q Consensus 93 k~kf~i~~~~Pypng~~lHiGH~~~~~~~Di~~Ry~r~~G~~V~~~~G~D~~Glpie~~a~~~g~~~~~~~~~~~~~~~~ 172 (952)
++++.++.|+=+..|. |||||..+.+. ..+++...|+++.+..|=++ |+-- . ..++ +.+.+++..+..
T Consensus 153 ~~~~~vy~G~dPTag~-LHLGh~v~~~~---~~~lQ~~~g~~~iilI~D~~-a~ig-----d-~lt~-e~i~~n~~~~~~ 220 (477)
T 1r6t_A 153 KKPFYLYTGRGPSSEA-MHVGHLIPFIF---TKWLQDVFNVPLVIQMTDDE-KYLW-----K-DLTL-DQAYGDAVENAK 220 (477)
T ss_dssp TCCEEEEEEECCCTTC-CBGGGHHHHHH---HHHHHHHHTCCEEEEECHHH-HHHH-----S-SCCH-HHHHHHHHHHHH
T ss_pred CCCcEEEEcccCCCCC-ccHHHHHHHHH---HHHHHHHhCCcEEEEEecce-eeec-----C-CCCH-HHHHHHHHHHHH
Confidence 4567787887655576 99999988642 34566657988776666322 2110 0 2333 335566666777
Q ss_pred HHHHcCCcc
Q 002217 173 QLKSLGFSY 181 (952)
Q Consensus 173 ~l~~lgi~~ 181 (952)
++.++|+..
T Consensus 221 ~~lA~GlDp 229 (477)
T 1r6t_A 221 DIIACGFDI 229 (477)
T ss_dssp HHHTTCCCT
T ss_pred HHHHhCCCC
Confidence 777888744
No 98
>2dlc_X Tyrosyl-tRNA synthetase, cytoplasmic; tyrrs, ligase-tRNA complex; HET: 2MG OMG M2G PSU 6IA 5MC 5MU 1MA YMP; 2.40A {Saccharomyces cerevisiae}
Probab=78.19 E-value=3.9 Score=45.82 Aligned_cols=27 Identities=19% Similarity=0.063 Sum_probs=10.6
Q ss_pred ccccccCCCCC-CChhhHHhhhCchhhhhhhhh
Q 002217 707 AHKMSKSRGNV-VNPDDVVTEYGADSLRLYEMF 738 (952)
Q Consensus 707 g~KMSKSkGNv-V~P~eii~~YGaDalRl~ll~ 738 (952)
|+|||||.+|. |...|= ++.+|=-++.
T Consensus 225 G~KMSKS~~ns~I~L~D~-----p~~i~kKI~k 252 (394)
T 2dlc_X 225 GGKMSASDPNSKIDLLEE-----PKQVKKKINS 252 (394)
T ss_dssp ---------CCSCBTTCC-----HHHHHHHHHH
T ss_pred CCcCCCCCCCCEEeccCC-----HHHHHHHHHH
Confidence 78999999996 876542 5555555553
No 99
>3hzr_A Tryptophanyl-tRNA synthetase; APO tRNA-ligase, structural genomics, medical structural GEN pathogenic protozoa, MSGPP, ligase; 3.00A {Entamoeba histolytica}
Probab=77.82 E-value=1.5 Score=48.92 Aligned_cols=15 Identities=20% Similarity=0.166 Sum_probs=12.1
Q ss_pred cccccC-CCCCCChhh
Q 002217 708 HKMSKS-RGNVVNPDD 722 (952)
Q Consensus 708 ~KMSKS-kGNvV~P~e 722 (952)
.||||| .+|.|...|
T Consensus 268 ~KMSKSd~~~~I~L~D 283 (386)
T 3hzr_A 268 TKFDIPSDHNSILLSD 283 (386)
T ss_dssp TCCCCCCTTTSCBTTC
T ss_pred CccCcCCCCCeeecCC
Confidence 499999 799996544
No 100
>2g36_A Tryptophanyl-tRNA synthetase; TM0492, structural genomics, joint center for struc genomics, JCSG, protein structure initiative, PSI, ligase; HET: TRP; 2.50A {Thermotoga maritima}
Probab=77.23 E-value=3 Score=45.80 Aligned_cols=28 Identities=32% Similarity=0.359 Sum_probs=22.6
Q ss_pred cccccccCCCCCCChhhHHhhhCchhhhhhhhh
Q 002217 706 RAHKMSKSRGNVVNPDDVVTEYGADSLRLYEMF 738 (952)
Q Consensus 706 ~g~KMSKSkGNvV~P~eii~~YGaDalRl~ll~ 738 (952)
+|+|||||.+|.|...| .++.++=.++.
T Consensus 202 dG~KMSKS~~n~I~L~d-----sp~~i~~Ki~~ 229 (340)
T 2g36_A 202 DGRKMSKSYGNIINLEI-----SEKELEQTILR 229 (340)
T ss_dssp TSSCCCGGGTCCCBTTC-----CHHHHHHHHHT
T ss_pred CccccCCCCCCeEeeeC-----CHHHHHHHHHh
Confidence 37899999999998877 67777777664
No 101
>3tze_A Tryptophanyl-tRNA synthetase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, amino acylation; HET: TRP; 2.60A {Encephalitozoon cuniculi}
Probab=75.90 E-value=4.1 Score=45.73 Aligned_cols=77 Identities=14% Similarity=0.209 Sum_probs=49.1
Q ss_pred CCcEEEEcCCCCCCC-CCCCCchhHHHHHHHHHHHHHHHcCCcccccccccccChHHHHHHHHhCCCchHHHHHHHHHHH
Q 002217 93 KPKFYVLDMFPYPSG-AGLHVGHPLGYTATDILARLKRMQGYNVLHPMGWDAFGLPAEQYAIETGTHPKITTLRNINRFR 171 (952)
Q Consensus 93 k~kf~i~~~~Pypng-~~lHiGH~~~~~~~Di~~Ry~r~~G~~V~~~~G~D~~Glpie~~a~~~g~~~~~~~~~~~~~~~ 171 (952)
++++.++.|+= |+| . |||||..+. .+..+++..-|..+.+..| |.|..- ....+ .+.+.++...+.
T Consensus 99 ~~p~~vy~G~~-PTg~~-lHLGh~v~~---~~~~~lQ~~~g~~~~i~Ia-D~~a~l------~~~~~-~e~i~~~~~~~~ 165 (406)
T 3tze_A 99 NRPFYLYTGRG-PSSKT-MHIGHTIPF---LLCKYMQDAFKIRLVIQIT-DDEKFL------WKSMR-LEDAMAYGRENI 165 (406)
T ss_dssp TCCEEEEEEEC-CCSSC-CBGGGHHHH---HHHHHHHHHHTCCEEEEEC-HHHHHH------HSSCC-HHHHHHHHHHHH
T ss_pred CCCeEEEEeeC-CCCCc-ccHHHHHHH---HHHHHHHHhcCCcEEEEee-ChHHHc------CCCCC-HHHHHHHHHHHH
Confidence 45677777764 565 5 999997764 3444567766887776544 333221 11233 455667777888
Q ss_pred HHHHHcCCccc
Q 002217 172 TQLKSLGFSYD 182 (952)
Q Consensus 172 ~~l~~lgi~~D 182 (952)
.++.++|+..+
T Consensus 166 ~~~lA~GlDp~ 176 (406)
T 3tze_A 166 KDIVTLGFDPK 176 (406)
T ss_dssp HHHHTTTCCGG
T ss_pred HHHHHcCCCcc
Confidence 89999998654
No 102
>3tze_A Tryptophanyl-tRNA synthetase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, amino acylation; HET: TRP; 2.60A {Encephalitozoon cuniculi}
Probab=75.47 E-value=1.4 Score=49.45 Aligned_cols=22 Identities=9% Similarity=-0.028 Sum_probs=14.9
Q ss_pred CceeEecCchhhHHHHHHHHHHH
Q 002217 602 PVDVYVGGAEHAVLHLLYARFWH 624 (952)
Q Consensus 602 PvDlyv~G~D~~~~HLly~Rfw~ 624 (952)
-+|+..+|.||- .|+..+|=..
T Consensus 243 ~a~lvpvG~DQ~-~~i~l~Rdla 264 (406)
T 3tze_A 243 AMCLVPAAVDQD-PFFRLARDKA 264 (406)
T ss_dssp CEEEEEEEGGGH-HHHHHHHHHH
T ss_pred CCeEEeeccchH-HHHHHHHHHH
Confidence 478999999995 3444455443
No 103
>3i05_A Tryptophanyl-tRNA synthetase; APO tRNA-ligase, ATP-binding, aminoacyl-tRNA synthetase, LIG nucleotide-binding, protein biosynthesis; 2.80A {Trypanosoma brucei} SCOP: c.26.1.0
Probab=73.93 E-value=5.4 Score=44.61 Aligned_cols=15 Identities=13% Similarity=0.040 Sum_probs=13.1
Q ss_pred cCCcccccccccccC
Q 002217 131 QGYNVLHPMGWDAFG 145 (952)
Q Consensus 131 ~G~~V~~~~G~D~~G 145 (952)
.|.....-+|+|..|
T Consensus 75 ~~~~~~vy~G~~PTg 89 (395)
T 3i05_A 75 SGQPFYLYTGRGPSS 89 (395)
T ss_dssp TTCCEEEEEEECCCS
T ss_pred cCCCeEEEEeecCCC
Confidence 688888999999888
No 104
>3sz3_A Tryptophanyl-tRNA synthetase; structural genomics, center for structural genomics of infec diseases, csgid, rossmann fold; HET: TRP; 1.50A {Vibrio cholerae o1 biovar el tor}
Probab=73.39 E-value=2.1 Score=46.98 Aligned_cols=64 Identities=17% Similarity=0.232 Sum_probs=36.2
Q ss_pred CCCCCCCCchhHHHHHHHHHHHHHHHcCCcccccccccccChHHHHHHHHhCCCchHHHHHHHHHHHHHHHHcCCccc
Q 002217 105 PSGAGLHVGHPLGYTATDILARLKRMQGYNVLHPMGWDAFGLPAEQYAIETGTHPKITTLRNINRFRTQLKSLGFSYD 182 (952)
Q Consensus 105 png~~lHiGH~~~~~~~Di~~Ry~r~~G~~V~~~~G~D~~Glpie~~a~~~g~~~~~~~~~~~~~~~~~l~~lgi~~D 182 (952)
|+|. |||||..+.+-+ +.+++. |+++.+..+ |-|.+-. ..++ +...+++..+..++.+.|+..+
T Consensus 15 PTG~-lHLGhy~g~l~~--~~~lQ~--~~~~~~~ia-D~ha~~~-------~~~~-~~~~~~~~~~~~~~lA~GlDp~ 78 (341)
T 3sz3_A 15 PSGE-LSIGNYLGALRQ--WQQMQD--DYDCQYCVV-DLHAITV-------RQDP-QALHEATLDALAICLAVGVDPK 78 (341)
T ss_dssp SSSC-CBHHHHHHTGGG--HHHHHH--HSEEEEEEC-HHHHTTS-------CCCH-HHHHHHHHHHHHHHHHTTCCTT
T ss_pred CCCc-ccHHHHHHHHHH--HHHHHh--cCeEEEEEe-cceeEcC-------CCCH-HHHHHHHHHHHHHHHHcCCChh
Confidence 5677 888888875422 334454 477665554 4444311 1233 3455566666777777777443
No 105
>1r6u_A Tryptophanyl-tRNA synthetase; class IC tRNA synthetase, rossmann fold catalytic domain, AN recognition domain, bound Trp-AMP, ligase; HET: TYM; 2.00A {Homo sapiens} SCOP: c.26.1.1 PDB: 1ulh_A 2dr2_A* 2ake_A* 1o5t_A
Probab=73.15 E-value=3.4 Score=46.89 Aligned_cols=77 Identities=18% Similarity=0.147 Sum_probs=47.9
Q ss_pred CCcEEEEcCCCCCCCCCCCCchhHHHHHHHHHHHHHHHcCCcccccccccccChHHHHHHHHhCCCchHHHHHHHHHHHH
Q 002217 93 KPKFYVLDMFPYPSGAGLHVGHPLGYTATDILARLKRMQGYNVLHPMGWDAFGLPAEQYAIETGTHPKITTLRNINRFRT 172 (952)
Q Consensus 93 k~kf~i~~~~Pypng~~lHiGH~~~~~~~Di~~Ry~r~~G~~V~~~~G~D~~Glpie~~a~~~g~~~~~~~~~~~~~~~~ 172 (952)
++++.++.|+=+..|. |||||..+.+. ..+++...|+++.+..|=. ||+-- . ..++ +.+.+++..+..
T Consensus 106 ~~~~~vy~G~dPTag~-LHLGh~v~~~~---~~~lQ~~~G~~~iilIgD~-ta~ig-----d-~lt~-e~i~~n~~~~~~ 173 (437)
T 1r6u_A 106 KKPFYLYTGRGPSSEA-MHVGHLIPFIF---TKWLQDVFNVPLVIQMTDD-EKYLW-----K-DLTL-DQAYGDAVENAK 173 (437)
T ss_dssp TCCEEEEEEECCCSSC-CBHHHHHHHHH---HHHHHHHHTCCEEEEECHH-HHHHH-----S-SCCH-HHHHHHHHHHHH
T ss_pred CCCcEEEEcccCCCCC-ccHHHHHHHHH---HHHHHHHhCCcEEEEEecc-eeeec-----C-CCCH-HHHHHHHHHHHH
Confidence 4567787887655576 99999987542 3456665798877666632 22211 0 2333 335566666677
Q ss_pred HHHHcCCcc
Q 002217 173 QLKSLGFSY 181 (952)
Q Consensus 173 ~l~~lgi~~ 181 (952)
++.++|+..
T Consensus 174 ~~lA~GlDp 182 (437)
T 1r6u_A 174 DIIACGFDI 182 (437)
T ss_dssp HHHTTTCCG
T ss_pred HHHHhCCCc
Confidence 777888743
No 106
>3p0j_A Tyrosyl-tRNA synthetase; aminoacyl-tRNA synthetase, tRNA ligase, AARS, tyrrs, pseudod translation, ATP-binding, nucleotide-binding, ligase; HET: TYE; 2.89A {Leishmania major} PDB: 3p0i_A* 3p0h_A*
Probab=70.92 E-value=1.5 Score=52.71 Aligned_cols=74 Identities=18% Similarity=0.155 Sum_probs=40.3
Q ss_pred cEEEEcCCCCCCCCCCCCchhHHHHHHH-HHHHHHHHcCCcccccccccccChHHHHHHHHhCCCchHHHHHHHHHHHHH
Q 002217 95 KFYVLDMFPYPSGAGLHVGHPLGYTATD-ILARLKRMQGYNVLHPMGWDAFGLPAEQYAIETGTHPKITTLRNINRFRTQ 173 (952)
Q Consensus 95 kf~i~~~~Pypng~~lHiGH~~~~~~~D-i~~Ry~r~~G~~V~~~~G~D~~Glpie~~a~~~g~~~~~~~~~~~~~~~~~ 173 (952)
++.++.|+ -|+|. ||||| .++.- .+.++++ .|++|.+..| |-|++-. .+.|.++ +...++...+.++
T Consensus 40 ~~~vy~G~-~PTg~-lHLG~---~v~~~~~~~~lQ~-~G~~~~~lIa-D~ha~~~----d~~~~~~-e~i~~~~~~~~~~ 107 (690)
T 3p0j_A 40 LIRCYDGF-EPSGR-MHIAQ---GIFKAVNVNKCTA-AGCEFVFWVA-DWFALMN----DKVGGEL-EKIRIVGRYLIEV 107 (690)
T ss_dssp TEEEEEEE-CCCSC-CBHHH---HHHHHHHHHHHHH-TTEEEEEEEC-CGGGGGG----CTTTTHH-HHHHHHHHHHHHH
T ss_pred CceEEeee-cCCCc-chhHh---hHHHHHHHHHHHH-CCCcEEEEEe-eeEEEec----CCCcchH-HHHHHHHHHHHHH
Confidence 34555564 36676 99999 33322 2455554 5888877776 6666511 0112222 2234445555666
Q ss_pred HHHcCCc
Q 002217 174 LKSLGFS 180 (952)
Q Consensus 174 l~~lgi~ 180 (952)
+.++|+.
T Consensus 108 ~lA~GlD 114 (690)
T 3p0j_A 108 WKAAGMD 114 (690)
T ss_dssp HHHTTCC
T ss_pred HHHcCCC
Confidence 7777763
No 107
>3prh_A Tryptophanyl-tRNA synthetase; TRPRS, protein biosynthesis, translation, class I tRNA synth rossman fold, high motif, KMSKS motif; 2.80A {Bacillus subtilis}
Probab=70.25 E-value=3.3 Score=46.18 Aligned_cols=74 Identities=18% Similarity=0.356 Sum_probs=45.6
Q ss_pred CcEE----EEcCCCCCCCCCCCCchhHHHHHHHHHHHHHHHcCCcccccccccccChHHHHHHHHhCCCchHHHHHHHHH
Q 002217 94 PKFY----VLDMFPYPSGAGLHVGHPLGYTATDILARLKRMQGYNVLHPMGWDAFGLPAEQYAIETGTHPKITTLRNINR 169 (952)
Q Consensus 94 ~kf~----i~~~~Pypng~~lHiGH~~~~~~~Di~~Ry~r~~G~~V~~~~G~D~~Glpie~~a~~~g~~~~~~~~~~~~~ 169 (952)
.+|+ |++|+ -|+|. |||||..+.+.. +.+++ .|+++.+..+ |-|.+-. ..++ +...+++..
T Consensus 30 ~p~~m~~ri~sG~-~PTG~-lHLGhyvGal~~--~~~LQ--~~~~~~~~Ia-D~hAlt~-------~~~~-~~lr~~~~~ 94 (388)
T 3prh_A 30 DPFTMKQTIFSGI-QPSGS-VTLGNYIGAMKQ--FVELQ--HDYNSYFCIV-DQHAITV-------PQDR-LELRKNIRN 94 (388)
T ss_dssp -----CCEEEEEE-CCCSC-CBHHHHHHTHHH--HHHTT--TTSEEEEEEC-HHHHTTS-------CCCH-HHHHHHHHH
T ss_pred CCcccCCeEEEee-CCCCc-chHHHHHHHHHH--HHHHH--ccCcEEEEEe-cceeeec-------CCCH-HHHHHHHHH
Confidence 4566 66664 47798 999999886542 22333 4899877664 5555421 2233 345666777
Q ss_pred HHHHHHHcCCccc
Q 002217 170 FRTQLKSLGFSYD 182 (952)
Q Consensus 170 ~~~~l~~lgi~~D 182 (952)
+..++.+.|+..+
T Consensus 95 ~aa~~lA~GlDp~ 107 (388)
T 3prh_A 95 LAALYLAVGLDPE 107 (388)
T ss_dssp HHHHHHHTTCCTT
T ss_pred HHHHHHHhCCChh
Confidence 8888899999665
No 108
>3foc_A Tryptophanyl-tRNA synthetase; structural genomics, giardiasi aminoacyl-tRNA synthetase, ligase; 2.09A {Giardia lamblia atcc 50803}
Probab=70.06 E-value=1.7 Score=49.50 Aligned_cols=12 Identities=42% Similarity=0.415 Sum_probs=9.7
Q ss_pred cccccCCCC-CCC
Q 002217 708 HKMSKSRGN-VVN 719 (952)
Q Consensus 708 ~KMSKSkGN-vV~ 719 (952)
+|||||.+| .|.
T Consensus 332 ~KMSKS~~ns~I~ 344 (451)
T 3foc_A 332 TKMSASDPNSAIY 344 (451)
T ss_dssp CCCCTTCGGGSCB
T ss_pred CccCCCCCCCeee
Confidence 599999998 454
No 109
>2j5b_A Tyrosyl-tRNA synthetase; ligase, protein biosynthesis, ATP-binding; HET: TYE; 2.20A {Acanthamoeba polyphaga mimivirus}
Probab=69.87 E-value=4.7 Score=44.42 Aligned_cols=21 Identities=14% Similarity=0.127 Sum_probs=13.6
Q ss_pred CceeEecCchhhHHHHHHHHHH
Q 002217 602 PVDVYVGGAEHAVLHLLYARFW 623 (952)
Q Consensus 602 PvDlyv~G~D~~~~HLly~Rfw 623 (952)
-+|+.++|.||- .|+..+|=.
T Consensus 186 ~~~~~~~G~DQ~-~~i~l~Rdi 206 (348)
T 2j5b_A 186 GIDICQLGIDQR-KVNMLAIEY 206 (348)
T ss_dssp CCSEECCBGGGH-HHHHHHHHH
T ss_pred CCcEEEeccChH-HHHHHHHHH
Confidence 478999999995 333333433
No 110
>1y42_X Tyrosyl-tRNA synthetase, mitochondrial; CYT-18, tRNA ligase, group I intron; HET: TYR; 1.95A {Neurospora crassa} PDB: 2rkj_A
Probab=69.82 E-value=4.5 Score=45.28 Aligned_cols=31 Identities=23% Similarity=0.158 Sum_probs=20.7
Q ss_pred cccccccCCCCCCChhhHHhhhCchhhhhhhhh
Q 002217 706 RAHKMSKSRGNVVNPDDVVTEYGADSLRLYEMF 738 (952)
Q Consensus 706 ~g~KMSKSkGNvV~P~eii~~YGaDalRl~ll~ 738 (952)
+|+|||||.||.|...+= +-.++.++=+++.
T Consensus 290 dG~KMSKS~~naI~L~d~--~tsp~~i~qki~~ 320 (392)
T 1y42_X 290 SGAKFGKSAGNAIWLDPY--QTSVFDFYGYFVR 320 (392)
T ss_dssp TCCBTTBCSSSBCBSSTT--TSCHHHHHHHHHT
T ss_pred chhhccCCCCCeeeccCC--CCCHHHHHHHHHc
Confidence 479999999999977652 2344455544443
No 111
>2ts1_A Tyrosyl-tRNA synthetase; ligase (synthetase); 2.30A {Geobacillus stearothermophilus} SCOP: c.26.1.1 PDB: 3ts1_A* 1tyd_E* 1tya_E* 1tyc_A 1tyb_E* 4ts1_A* 1jh3_A
Probab=69.77 E-value=5.9 Score=44.69 Aligned_cols=74 Identities=26% Similarity=0.317 Sum_probs=40.8
Q ss_pred EEEcCCCCCCCCCCCCchhHHHHHHHHHHHHHHHcCCcccccccccccCh---HHHHHHHHhCCCchHHHHHHHHHHHHH
Q 002217 97 YVLDMFPYPSGAGLHVGHPLGYTATDILARLKRMQGYNVLHPMGWDAFGL---PAEQYAIETGTHPKITTLRNINRFRTQ 173 (952)
Q Consensus 97 ~i~~~~Pypng~~lHiGH~~~~~~~Di~~Ry~r~~G~~V~~~~G~D~~Gl---pie~~a~~~g~~~~~~~~~~~~~~~~~ 173 (952)
.++.|+= |+|+.|||||... --.+.|+++ .|+++++..|= .||+ |.- +..++..-..+...+++..+++|
T Consensus 32 ~iy~G~d-PTg~sLHlGh~v~---l~~l~~lQ~-~G~~~i~lIgd-~ta~igdpsg-k~~~R~~l~~e~i~~n~~~~~~q 104 (419)
T 2ts1_A 32 TLYCGFD-PTADSLHIGHLAT---ILTMRRFQQ-AGHRPIALVGG-ATGLIGDPSG-KKSERTLNAKETVEAWSARIKEQ 104 (419)
T ss_dssp EEEEEEC-CSSSSCBGGGHHH---HHHHHHHHH-TTCEEEEEECT-TGGGTCCCTT-CSSCCCCCCHHHHHHHHHHHHHH
T ss_pred EEEEeeC-CCCCCccHHHHHH---HHHHHHHHH-CCCcEEEEEcC-ceeEecCCCC-ccccccCCCHHHHHHHHHHHHHH
Confidence 3444542 4453499999763 234556664 59998877763 3333 310 00011111234566788888888
Q ss_pred HHHc
Q 002217 174 LKSL 177 (952)
Q Consensus 174 l~~l 177 (952)
+.++
T Consensus 105 ~~~~ 108 (419)
T 2ts1_A 105 LGRF 108 (419)
T ss_dssp HTTS
T ss_pred HHHH
Confidence 8774
No 112
>3vgj_A Tyrosyl-tRNA synthetase, putative; tyrrs, ligase; HET: YAP; 2.21A {Plasmodium falciparum}
Probab=66.95 E-value=5.3 Score=44.37 Aligned_cols=23 Identities=22% Similarity=0.184 Sum_probs=15.8
Q ss_pred CCceeEecCchhhHHHHHHHHHHH
Q 002217 601 SPVDVYVGGAEHAVLHLLYARFWH 624 (952)
Q Consensus 601 ~PvDlyv~G~D~~~~HLly~Rfw~ 624 (952)
+-+|+.++|.||- .|+..+|=..
T Consensus 199 l~ad~vpgG~DQ~-~~l~l~Rdla 221 (373)
T 3vgj_A 199 LNVDICQLGIDQR-KVNMLAREYC 221 (373)
T ss_dssp TTCSEECCBGGGH-HHHHHHHHHH
T ss_pred cCCcEEEcchhhH-HHHHHHHHHH
Confidence 4689999999994 3444455543
No 113
>1jil_A Tyrrs, tyrosyl-tRNA synthetase; truncation, based inhibitor design, ligase; HET: 485; 2.20A {Staphylococcus aureus} SCOP: c.26.1.1 PDB: 1jij_A* 1jii_A* 1jik_A*
Probab=66.76 E-value=6.7 Score=44.28 Aligned_cols=31 Identities=16% Similarity=0.117 Sum_probs=22.3
Q ss_pred cccccccCCCCCCChhhHHhhhCchhhhhhhhh
Q 002217 706 RAHKMSKSRGNVVNPDDVVTEYGADSLRLYEMF 738 (952)
Q Consensus 706 ~g~KMSKSkGNvV~P~eii~~YGaDalRl~ll~ 738 (952)
+|+|||||.||.|...+ ++-.++.++=+++.
T Consensus 228 dG~KMSKS~~naI~L~d--~~tsp~~i~~ki~~ 258 (420)
T 1jil_A 228 DGKKFGKSESGAVWLDA--EKTSPYEFYQFWIN 258 (420)
T ss_dssp TSCBTTBCSSSBCBSST--TTSCHHHHHHHHHT
T ss_pred ccccccCCCCCeEecCC--CCCCHHHHHHHHhc
Confidence 37999999999988765 24456666655564
No 114
>3sz3_A Tryptophanyl-tRNA synthetase; structural genomics, center for structural genomics of infec diseases, csgid, rossmann fold; HET: TRP; 1.50A {Vibrio cholerae o1 biovar el tor}
Probab=66.74 E-value=4 Score=44.81 Aligned_cols=25 Identities=20% Similarity=0.058 Sum_probs=17.9
Q ss_pred CCceeEecCchhhHHHHHHHHHHHHH
Q 002217 601 SPVDVYVGGAEHAVLHLLYARFWHKV 626 (952)
Q Consensus 601 ~PvDlyv~G~D~~~~HLly~Rfw~~~ 626 (952)
+-+|+..+|.||. -|+..+|=....
T Consensus 142 ~~ad~vpvG~DQ~-~hlel~Rdia~r 166 (341)
T 3sz3_A 142 YGAHQVPVGSDQK-QHLELARDIATR 166 (341)
T ss_dssp TTCSEECCCGGGH-HHHHHHHHHHHH
T ss_pred cCCCEEEeccchH-HHHHHHHHHHHH
Confidence 4689999999995 466656666443
No 115
>3n9i_A Tryptophanyl-tRNA synthetase; tryptophan-tRNA ligase, csgid, structural genomics, niaid, center for structural genomics infectious diseases; 1.95A {Yersinia pestis} SCOP: c.26.1.1
Probab=64.74 E-value=6.2 Score=43.34 Aligned_cols=25 Identities=16% Similarity=0.068 Sum_probs=18.2
Q ss_pred CCceeEecCchhhHHHHHHHHHHHHH
Q 002217 601 SPVDVYVGGAEHAVLHLLYARFWHKV 626 (952)
Q Consensus 601 ~PvDlyv~G~D~~~~HLly~Rfw~~~ 626 (952)
+-+|+..+|.||. -|+..+|=....
T Consensus 151 ~~ad~vpvG~DQ~-~hleltRdia~r 175 (346)
T 3n9i_A 151 YQTNQVPVGEDQK-QHLELSRDIASR 175 (346)
T ss_dssp TTCSEECCCGGGH-HHHHHHHHHHHH
T ss_pred hCceEEEeccchH-HHHHHHHHHHHH
Confidence 4689999999996 466656766443
No 116
>3prh_A Tryptophanyl-tRNA synthetase; TRPRS, protein biosynthesis, translation, class I tRNA synth rossman fold, high motif, KMSKS motif; 2.80A {Bacillus subtilis}
Probab=64.59 E-value=5.7 Score=44.31 Aligned_cols=25 Identities=20% Similarity=0.190 Sum_probs=18.5
Q ss_pred CCceeEecCchhhHHHHHHHHHHHHH
Q 002217 601 SPVDVYVGGAEHAVLHLLYARFWHKV 626 (952)
Q Consensus 601 ~PvDlyv~G~D~~~~HLly~Rfw~~~ 626 (952)
|-+|+..+|.||. -|+..+|=....
T Consensus 170 ~~ad~vPvG~DQ~-~hleltRdia~r 194 (388)
T 3prh_A 170 YGTDLVPPGEDQK-QHLELTRNLAER 194 (388)
T ss_dssp TTCCEECCCSSCH-HHHHHHHHHHHH
T ss_pred hCCCEEEechhHH-HHHHHHHHHHHH
Confidence 5789999999996 466666666433
No 117
>2yy5_A Tryptophanyl-tRNA synthetase; aminoaccyl tRNA synthetase, structural genomics, NPPSFA; HET: WSA; 2.55A {Mycoplasma pneumoniae}
Probab=63.52 E-value=8.5 Score=42.33 Aligned_cols=24 Identities=21% Similarity=0.195 Sum_probs=17.4
Q ss_pred CCceeEecCchhhHHHHHHHHHHHH
Q 002217 601 SPVDVYVGGAEHAVLHLLYARFWHK 625 (952)
Q Consensus 601 ~PvDlyv~G~D~~~~HLly~Rfw~~ 625 (952)
|-+|+.++|.||. .|+..+|=...
T Consensus 146 ~~a~~vpvG~DQ~-~~lel~Rdia~ 169 (348)
T 2yy5_A 146 YQPDIVPVGNDQK-QHLELTRDLAQ 169 (348)
T ss_dssp TCCSEEECCGGGH-HHHHHHHHHHH
T ss_pred hCccEEEecccHH-HHHHHHHHHHH
Confidence 5789999999996 45555565543
No 118
>2cyc_A Tyrosyl-tRNA synthetase; tyrosine, tyrrs, aminoacylation, structural genomics; HET: TYR; 2.20A {Pyrococcus horikoshii}
Probab=61.84 E-value=8.7 Score=42.70 Aligned_cols=26 Identities=31% Similarity=0.188 Sum_probs=17.9
Q ss_pred cccccCC-CCCCChhhHHhhhCchhhhhhhhh
Q 002217 708 HKMSKSR-GNVVNPDDVVTEYGADSLRLYEMF 738 (952)
Q Consensus 708 ~KMSKSk-GNvV~P~eii~~YGaDalRl~ll~ 738 (952)
.|||||. +|.|...|= ++.+|=.++.
T Consensus 250 ~KMSKS~~~~~I~L~d~-----p~~i~~KI~~ 276 (375)
T 2cyc_A 250 MKMSKSKPYSAVFIHDS-----PEEIRQKLRK 276 (375)
T ss_dssp HBGGGSCGGGSCBTTCC-----HHHHHHHHHH
T ss_pred hcccCCCCCCeeccCCC-----HHHHHHHHHH
Confidence 8999999 787876543 5555555543
No 119
>3p0j_A Tyrosyl-tRNA synthetase; aminoacyl-tRNA synthetase, tRNA ligase, AARS, tyrrs, pseudod translation, ATP-binding, nucleotide-binding, ligase; HET: TYE; 2.89A {Leishmania major} PDB: 3p0i_A* 3p0h_A*
Probab=58.55 E-value=12 Score=45.04 Aligned_cols=17 Identities=6% Similarity=0.032 Sum_probs=12.7
Q ss_pred CCceeEecCchhhHHHH
Q 002217 601 SPVDVYVGGAEHAVLHL 617 (952)
Q Consensus 601 ~PvDlyv~G~D~~~~HL 617 (952)
+-+|+.++|.||-..|+
T Consensus 519 l~aDi~~gG~DQ~~~~~ 535 (690)
T 3p0j_A 519 LSVSHVISTSLDGHINA 535 (690)
T ss_dssp TTCSEEEECSTTTTTTH
T ss_pred cCCCEEecccccHHHHH
Confidence 45899999999954443
No 120
>1n3l_A Tyrosyl-tRNA synthetase; rossmann fold AS catalytic domain, unique anticodon recognit domain, dimer, ligase; 1.18A {Homo sapiens} SCOP: c.26.1.1 PDB: 1q11_A*
Probab=58.33 E-value=5.1 Score=44.51 Aligned_cols=28 Identities=18% Similarity=0.100 Sum_probs=13.7
Q ss_pred cccccccCCCC-CCChhhHHhhhCchhhhhhhhh
Q 002217 706 RAHKMSKSRGN-VVNPDDVVTEYGADSLRLYEMF 738 (952)
Q Consensus 706 ~g~KMSKSkGN-vV~P~eii~~YGaDalRl~ll~ 738 (952)
+|+|||||.+| .|...|= ++.+|=.++.
T Consensus 219 dG~KMSKS~~ns~I~L~d~-----p~~i~kKi~~ 247 (372)
T 1n3l_A 219 TGSKMSSSEEESKIDLLDR-----KEDVKKKLKK 247 (372)
T ss_dssp SCC-------CCSCBTTCC-----HHHHHHHHHT
T ss_pred CcccccCCCCCCeEeccCC-----HHHHHHHHHH
Confidence 37899999999 6776553 6677766654
No 121
>1nzj_A Hypothetical protein YADB; Zn cluster, glutamyl T-RNA synthetase, structural genomics, unknown function; 1.50A {Escherichia coli} SCOP: c.26.1.1 PDB: 2zlz_A* 4a91_A*
Probab=58.31 E-value=4.3 Score=43.66 Aligned_cols=12 Identities=25% Similarity=0.268 Sum_probs=0.0
Q ss_pred cccccccCCCCC
Q 002217 706 RAHKMSKSRGNV 717 (952)
Q Consensus 706 ~g~KMSKSkGNv 717 (952)
+|+|||||+||+
T Consensus 225 ~g~KLSKR~g~~ 236 (298)
T 1nzj_A 225 QGAKLSKQNHAP 236 (298)
T ss_dssp ------------
T ss_pred CCCcccccCCcc
Confidence 489999999998
No 122
>3n9i_A Tryptophanyl-tRNA synthetase; tryptophan-tRNA ligase, csgid, structural genomics, niaid, center for structural genomics infectious diseases; 1.95A {Yersinia pestis} SCOP: c.26.1.1
Probab=53.40 E-value=8 Score=42.44 Aligned_cols=70 Identities=17% Similarity=0.248 Sum_probs=42.8
Q ss_pred EEcCCCCCCCCCCCCchhHHHHHHHHHHHHHHHcCCcccccccccccChHHHHHHHHhCCCchHHHHHHHHHHHHHHHHc
Q 002217 98 VLDMFPYPSGAGLHVGHPLGYTATDILARLKRMQGYNVLHPMGWDAFGLPAEQYAIETGTHPKITTLRNINRFRTQLKSL 177 (952)
Q Consensus 98 i~~~~Pypng~~lHiGH~~~~~~~Di~~Ry~r~~G~~V~~~~G~D~~Glpie~~a~~~g~~~~~~~~~~~~~~~~~l~~l 177 (952)
+++|+ -|+|. |||||..+.+.+ +.+++ .++++.+..+ |-|.+-. ..++ +...+++..+..++.+.
T Consensus 18 i~sG~-~PTG~-lHLGh~vg~l~~--~~~lQ--~~~~~~~~ia-D~hA~t~-------~~~~-~~~~~~~~~~~~~~lA~ 82 (346)
T 3n9i_A 18 VFSGA-QPSGE-LTIGNYMGALRQ--WVQMQ--DDYDCIYCIV-DLHAITA-------RQDP-ALLRKRTLDTLALYLAC 82 (346)
T ss_dssp EEEEE-CSCSC-CBHHHHHHTHHH--HHTTT--TTSEEEEEEC-HHHHTTS-------CCCH-HHHHHHHHHHHHHHHHH
T ss_pred EEECc-CCCCc-ccHHHHHHHHHH--HHHHH--hhCcEEEEEe-cceeecC-------CCCH-HHHHHHHHHHHHHHHHc
Confidence 33443 36798 999998886422 22333 4677766554 5555421 2233 44566677778888899
Q ss_pred CCccc
Q 002217 178 GFSYD 182 (952)
Q Consensus 178 gi~~D 182 (952)
|+..+
T Consensus 83 GlDp~ 87 (346)
T 3n9i_A 83 GIDPK 87 (346)
T ss_dssp TCCTT
T ss_pred CCCcc
Confidence 99665
No 123
>2yxn_A Tyrosyl-tRNA synthetase; tRNA synthetases class I, structural genomics, NPPSFA, natio project on protein structural and functional analyses; HET: AZY; 1.80A {Escherichia coli str} PDB: 1wq3_A* 1wq4_A* 1x8x_A* 1vbn_A* 1vbm_A*
Probab=53.29 E-value=14 Score=40.21 Aligned_cols=74 Identities=26% Similarity=0.385 Sum_probs=39.7
Q ss_pred EEEcCCCCCCCCCCCCchhHHHHHHHHHHHHHHHcCCcccccccccccCh---HHHHHHHHhCCCchHHHHHHHHHHHHH
Q 002217 97 YVLDMFPYPSGAGLHVGHPLGYTATDILARLKRMQGYNVLHPMGWDAFGL---PAEQYAIETGTHPKITTLRNINRFRTQ 173 (952)
Q Consensus 97 ~i~~~~Pypng~~lHiGH~~~~~~~Di~~Ry~r~~G~~V~~~~G~D~~Gl---pie~~a~~~g~~~~~~~~~~~~~~~~~ 173 (952)
.++.|+= |+|..|||||... --.+.++++ .|+++++..| |.|++ |. -+-.++..-..+...++++.++++
T Consensus 35 ~vy~G~~-PTg~slHlGh~l~---l~~~~~lQ~-~g~~~~~~i~-D~~a~~~dp~-g~~~~R~~l~~e~i~~n~~~~~~~ 107 (322)
T 2yxn_A 35 ALVCGFD-PTADSLHLGHLVP---LLCLKRFQQ-AGHKPVALVG-GATGLIGDPS-FKAAERKLNTEETVQEWVDKIRKQ 107 (322)
T ss_dssp EEEEEEC-CSSSSCBHHHHHH---HHHHHHHHH-TTCEEEEEEC-TTGGGTCCCT-TCSSCCCCCCHHHHHHHHHHHHHH
T ss_pred EEEEeec-CCCCcccHHHHHH---HHHHHHHHH-cCCcEEEEEc-cceeeecCCC-CcccccccCCHHHHHHHHHHHHHH
Confidence 4445543 4453499999763 234556654 4898877666 33343 20 000011111234566777777887
Q ss_pred HHHc
Q 002217 174 LKSL 177 (952)
Q Consensus 174 l~~l 177 (952)
+.++
T Consensus 108 ~~~~ 111 (322)
T 2yxn_A 108 VAPF 111 (322)
T ss_dssp HGGG
T ss_pred HHHH
Confidence 7765
No 124
>4g6z_A Glutamate-tRNA ligase; aminoacyl-tRNA synthetase, AARS, class 1B AARS, ATP-dependen charging, protein synthesis, structural genomics; HET: GLU; 2.05A {Burkholderia thailandensis}
Probab=51.29 E-value=17 Score=41.75 Aligned_cols=34 Identities=24% Similarity=0.308 Sum_probs=28.4
Q ss_pred cccccccCCCCCCChhhHHhh-hCchhhhhhhhhcC
Q 002217 706 RAHKMSKSRGNVVNPDDVVTE-YGADSLRLYEMFMG 740 (952)
Q Consensus 706 ~g~KMSKSkGNvV~P~eii~~-YGaDalRl~ll~~~ 740 (952)
+|+||||+.|. ++..++.++ |-++++|=|++..|
T Consensus 261 ~g~KLSKR~g~-~sl~~~r~~G~~peal~n~l~~lG 295 (490)
T 4g6z_A 261 QGEKMSKRHGA-MSVMGYRDAGYLPEAVLNYLARLG 295 (490)
T ss_dssp TSSBCCTTTTC-CBHHHHHHTTCCHHHHHHHHHTSS
T ss_pred CCCcccCCCCC-cCHHHHHHCCCCHHHHHHHHHHhC
Confidence 38999999987 577777765 89999999998765
No 125
>1yi8_B Tryptophanyl-tRNA synthetase; ligase; HET: TRP; 2.10A {Deinococcus radiodurans} PDB: 1yia_B* 1yid_B* 2a4m_A*
Probab=51.06 E-value=9.4 Score=42.03 Aligned_cols=27 Identities=41% Similarity=0.382 Sum_probs=19.2
Q ss_pred cc-ccccCCCCCCChhhHHhhhCchhhhhhhhh
Q 002217 707 AH-KMSKSRGNVVNPDDVVTEYGADSLRLYEMF 738 (952)
Q Consensus 707 g~-KMSKSkGNvV~P~eii~~YGaDalRl~ll~ 738 (952)
|+ |||||.+|.|...+= ++.++=.++.
T Consensus 212 G~~KMSKS~~n~I~L~d~-----p~~i~~Ki~~ 239 (351)
T 1yi8_B 212 GQAKMSKSLGNAIALGDS-----ADEVARKVMG 239 (351)
T ss_dssp SSSCCCTTTTCCCBTTCC-----HHHHHHHHHT
T ss_pred CccccCCCCCCeecCCCC-----HHHHHHHHHh
Confidence 55 999999998876543 5666655553
No 126
>2pid_A Tyrosyl-tRNA synthetase; aminoacyl-tRNA synthetase, protein-substrate complex, ATP-BI ligase, mitochondrion, nucleotide-binding, protein biosynth; HET: YSA; 2.20A {Homo sapiens} PDB: 3zxi_A*
Probab=46.28 E-value=30 Score=37.99 Aligned_cols=72 Identities=29% Similarity=0.314 Sum_probs=41.2
Q ss_pred EEEEcCCCCCCCCCCCCchhHHHHHHHHHHHHHHHcCCcccccccccccChHHHHHHHHhCCC------chHHHHHHHHH
Q 002217 96 FYVLDMFPYPSGAGLHVGHPLGYTATDILARLKRMQGYNVLHPMGWDAFGLPAEQYAIETGTH------PKITTLRNINR 169 (952)
Q Consensus 96 f~i~~~~Pypng~~lHiGH~~~~~~~Di~~Ry~r~~G~~V~~~~G~D~~Glpie~~a~~~g~~------~~~~~~~~~~~ 169 (952)
+.++.|+= |+|..||||| +.-+. .+.++++ .|+++++..| |.|++-. ...|.. ..+...+++..
T Consensus 47 ~~vy~G~~-PTg~sLHLGh-l~~l~--~~~~lQ~-~G~~~~~lIa-D~hal~~----dp~g~~~~R~~l~~e~i~~n~~~ 116 (356)
T 2pid_A 47 QTIYCGFD-PTADSLHVGH-LLALL--GLFHLQR-AGHNVIALVG-GATARLG----DPSGRTKEREALETERVRANARA 116 (356)
T ss_dssp CEEEEEEC-CSSSSCBHHH-HHHHH--HHHHHHH-TTCEEEEEEC-TTGGGTC----CCTTCSSCCCCCCHHHHHHHHHH
T ss_pred CEEEEeec-CCCCcccHHH-HHHHH--HHHHHHH-CCCcEEEEEc-cceeeec----CCcccccccccCCHHHHHHHHHH
Confidence 44555543 4563399999 44333 3666665 5899887766 3344311 001111 23456677788
Q ss_pred HHHHHHHc
Q 002217 170 FRTQLKSL 177 (952)
Q Consensus 170 ~~~~l~~l 177 (952)
+..++.++
T Consensus 117 ~~~~~~a~ 124 (356)
T 2pid_A 117 LRLGLEAL 124 (356)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHh
Confidence 88888877
No 127
>3a04_A Tryptophanyl-tRNA synthetase; ligase, aminoacyl-tRNA synthetase, ATP-binding, cytoplasm, nucleotide-binding, protein biosynthesis; 1.97A {Aeropyrum pernix} PDB: 3a05_A*
Probab=34.95 E-value=11 Score=41.71 Aligned_cols=20 Identities=30% Similarity=0.197 Sum_probs=13.0
Q ss_pred eeEecCchhhHHHHHHHHHHH
Q 002217 604 DVYVGGAEHAVLHLLYARFWH 624 (952)
Q Consensus 604 Dlyv~G~D~~~~HLly~Rfw~ 624 (952)
.+..-|.||. -|+..+|=..
T Consensus 210 ~~VPVG~DQ~-~hleltRdiA 229 (372)
T 3a04_A 210 VVVPVGADQD-PHLRLTRDLA 229 (372)
T ss_dssp EEEEEEGGGH-HHHHHHHHHH
T ss_pred eecccchhhH-HHHHHHHHHH
Confidence 3444599995 4666666654
No 128
>2jan_A Tyrosyl-tRNA synthetase; protein biosynthesis, aminoacyl-tRNA synthetase, tyrrs, ligase, tyrosine, RNA-binding, ATP-binding; 2.9A {Mycobacterium tuberculosis}
Probab=33.28 E-value=21 Score=40.40 Aligned_cols=75 Identities=28% Similarity=0.322 Sum_probs=38.5
Q ss_pred EEEcCCCCCCCCCCCCchhHHHHHHHHHHHHHHHcCCcccccccccccChHHHH-HHHHhCCCchHHHHHHHHHHHHHHH
Q 002217 97 YVLDMFPYPSGAGLHVGHPLGYTATDILARLKRMQGYNVLHPMGWDAFGLPAEQ-YAIETGTHPKITTLRNINRFRTQLK 175 (952)
Q Consensus 97 ~i~~~~Pypng~~lHiGH~~~~~~~Di~~Ry~r~~G~~V~~~~G~D~~Glpie~-~a~~~g~~~~~~~~~~~~~~~~~l~ 175 (952)
.++.|+ -|+|+.||||| +.-+. .+.++++ .|+++++..| |.||+-.-- +..++..-..+...+++..+++++.
T Consensus 34 ~iy~G~-dPTg~sLHLGh-lv~l~--~l~~lQ~-~G~~~i~lIg-D~ta~igdpsk~~~R~~~~~e~i~~n~~~~~~~~~ 107 (432)
T 2jan_A 34 TVYAGF-DPTAPSLHAGH-LVPLL--TLRRFQR-AGHRPIVLAG-GATGMIGDPRDVGERSLNEADTVAEWTERIRGQLE 107 (432)
T ss_dssp EEEEEE-CCSSSSCBGGG-HHHHH--HHHHHHH-TTCEEEEEEC-HHHHHHHCCCCTTTSGGGHHHHHHHHHHHHHHHHH
T ss_pred EEEEee-CCCCCCcCHHH-HHHHH--HHHHHHH-CCCcEEEEEc-CcEEEccCCcccccccCCCHHHHHHHHHHHHHHHH
Confidence 344453 25563399999 44333 3666665 5999887775 333431100 0000000112345667777777766
Q ss_pred Hc
Q 002217 176 SL 177 (952)
Q Consensus 176 ~l 177 (952)
++
T Consensus 108 ~~ 109 (432)
T 2jan_A 108 RF 109 (432)
T ss_dssp HH
T ss_pred HH
Confidence 54
No 129
>1h3f_A Tyrosyl-tRNA synthetase; ligase, aminoacyl-tRNA synthetase; HET: TYE; 2.00A {Thermus thermophilus} SCOP: c.26.1.1 d.66.1.4 PDB: 1h3e_A*
Probab=33.05 E-value=20 Score=40.57 Aligned_cols=77 Identities=19% Similarity=0.229 Sum_probs=35.3
Q ss_pred cEEEEcCCCCCCCCCCCCchhHHHHHHHHHHHHHHHcCCcccccccccccCh---HHHHHHHHhCCCchHHHHHHHHHHH
Q 002217 95 KFYVLDMFPYPSGAGLHVGHPLGYTATDILARLKRMQGYNVLHPMGWDAFGL---PAEQYAIETGTHPKITTLRNINRFR 171 (952)
Q Consensus 95 kf~i~~~~Pypng~~lHiGH~~~~~~~Di~~Ry~r~~G~~V~~~~G~D~~Gl---pie~~a~~~g~~~~~~~~~~~~~~~ 171 (952)
++.++.|+= |+|+.|||||... --.+.+++. .|+++.+..| |.|++ |.-. ...+..-..+.+.+++..+.
T Consensus 37 ~~~vy~G~d-PTg~sLHlGh~v~---l~~l~~lQ~-~G~~~i~lIg-D~ta~igdpsgk-~~~R~~l~~e~i~~n~~~~~ 109 (432)
T 1h3f_A 37 PLTVKLGAD-PTRPDLHLGHAVV---LRKMRQFQE-LGHKVVLIIG-DFTGMIGDPSGR-SKTRPPLTLEETRENAKTYV 109 (432)
T ss_dssp CCEEEEEEC-TTCCSCBHHHHHH---HHHHHHHHH-TTCEEEEEEC-CCC----------------------HHHHHHHH
T ss_pred CcEEEEccc-CCCCCCchhhHHH---HHHHHHHHH-CCCCEEEEEc-cceEEecCCCCc-ccccccCCHHHHHHHHHHHH
Confidence 344555643 4552399999773 334566665 5999877766 33443 3211 11111111234455566666
Q ss_pred HHHHHcCC
Q 002217 172 TQLKSLGF 179 (952)
Q Consensus 172 ~~l~~lgi 179 (952)
.++. -|+
T Consensus 110 ~ql~-~~l 116 (432)
T 1h3f_A 110 AQAG-KIL 116 (432)
T ss_dssp HHHT-TTS
T ss_pred HHHH-HHh
Confidence 6654 344
Done!