BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 002218
(952 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3HTX|A Chain A, Crystal Structure Of Small Rna Methyltransferase Hen1
pdb|3HTX|D Chain D, Crystal Structure Of Small Rna Methyltransferase Hen1
Length = 950
Score = 802 bits (2072), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 453/947 (47%), Positives = 590/947 (62%), Gaps = 47/947 (4%)
Query: 17 TPKAIIVQKFGRNAQFTVDEVQDVVQNGCPGLAIPQKGPCLYRCSLQLPEFSVVSETFKK 76
TPKAII QKFG A +TV+EV D Q+GCPGLAIPQKGPCLYRC LQLPEFSVVS FKK
Sbjct: 18 TPKAIIHQKFGAKASYTVEEVHDSSQSGCPGLAIPQKGPCLYRCHLQLPEFSVVSNVFKK 77
Query: 77 KKDAEQSAAEKALEKLGIDPSPNVPSAEEAWDKLIASVKHLFSNEFLSSQSPLRGHFIAA 136
KKD+EQSAAE AL+KLGI P + + +EA D+++ +K++FS+EFLS++ PL H AA
Sbjct: 78 KKDSEQSAAELALDKLGIRPQNDDLTVDEARDEIVGRIKYIFSDEFLSAEHPLGAHLRAA 137
Query: 137 LRRDGDLYGSVPASVIAVCDSKLANLCKLINPKVESSHLLVLTYIMRAATRLSEFVVTSE 196
LRRDG+ GSVP SVIA D+K+ + CK+INP VES L ++Y+M+AA +L++++V S
Sbjct: 138 LRRDGERCGSVPVSVIATVDAKINSRCKIINPSVESDPFLAISYVMKAAAKLADYIVASP 197
Query: 197 GQLSIWRKDPYPXXXXXXXXXXXXXXXXXXCIEAIHIPSSLEMAVHPVTLNVSSTGYYLD 256
L RK+ YP + A++IP E V TL +SS +YLD
Sbjct: 198 HGLR--RKNAYPSEIVEALATHVSDSLHSREVAAVYIPCIDEEVVELDTLYISSNRHYLD 255
Query: 257 VIARNLDQTDGNKILVSSRTIGKAS--SEMRLYFAAPKSYLLDLSSDLPNV--EEVVDFE 312
IA L DGN++++ SR GKAS SE RLY PK Y LD SSD E+
Sbjct: 256 SIAERLGLKDGNQVMI-SRMFGKASCGSECRLYSEIPKKY-LDNSSDASGTSNEDSSHIV 313
Query: 313 GSLNPRASYLYGQDIYGDAILASIGYTRKSEGLFHEDITLQSYYRMLIHLTPSGVYKLSR 372
S N RASY+ GQDI+GDAILAS+GY KS+ L ++D+T+ S+YR+ ++P+G+YK+SR
Sbjct: 314 KSRNARASYICGQDIHGDAILASVGYRWKSDDLDYDDVTVNSFYRICCGMSPNGIYKISR 373
Query: 373 EAILTAELPMAFTTRTNWRGSFPREMLFMFCRQHWLSEPVFXXXXXXXXXXXXXXRFYEK 432
+A++ A+LP AFTT++NWRG PRE+L +FC QH L+EP+ R ++K
Sbjct: 374 QAVIAAQLPFAFTTKSNWRGPLPREILGLFCHQHRLAEPILSSSTAPVKSLSDIFRSHKK 433
Query: 433 ------SAALESAETGKECTSGGGTAASDNVRCEVKIFSKSRDPILECSPKEFYKKQNES 486
A E+ KE T G G RCEVKIF+KS+D +LECSP++FY+K+N++
Sbjct: 434 LKVSGVDDANENLSRQKEDTPGLGHG----FRCEVKIFTKSQDLVLECSPRKFYEKENDA 489
Query: 487 IENASLKVLSWLNAYFKDPDIPLEKLNNLVGALDIQCYPQNFFKKFSSYRFIHNVQQRKM 546
I+NASLK L W + +F D D+ E+ + D + N F + H+ + +
Sbjct: 490 IQNASLKALLWFSKFFADLDVDGEQSCDTDDDQDTKSSSPNVFAAPPILQKEHSSESKNT 549
Query: 547 ----GEKLLQANSINTLNAIPEHGIYCLSIG-GPD---SGIYPSNGCLSFISYSVSLVIE 598
EK +Q+ + ++ +I Y LS+ P+ G P S
Sbjct: 550 NVLSAEKRVQSITNGSVVSI----CYSLSLAVDPEYSSDGESPREDNESNEEMESEYSAN 605
Query: 599 GETMKXXXXXXXXXXXXMGTGAVIPQVEVVTAQMSVGQSACFCKELPP---QELILAAAD 655
E+ +GTG++ P +E QM+VG+ A F K PP + LILA
Sbjct: 606 CESSVEPIESNEEIEFEVGTGSMNPHIESEVTQMTVGEYASF-KMTPPDAAEALILAVGS 664
Query: 656 DSARTFSLLSSRACCLEYHITLLRVTEPPEDRMEQALFSPPLSKQRVEYALQHIKESCAT 715
D+ R SLLS R CL Y+I LL V P E+RME A F PPLSKQRVEYAL+HI+ES A+
Sbjct: 665 DTVRIRSLLSERP-CLNYNILLLGVKGPSEERMEAAFFKPPLSKQRVEYALKHIRESSAS 723
Query: 716 TLVXXXXXXXXXXXXXXXYPTALEKIVGVDISQKSLSRAAKIIHSKLSKKLDAAVPCTDV 775
TLV YPT+L+ I+GVDIS K L+RAAK++H KL+K+ +V
Sbjct: 724 TLVDFGCGSGSLLDSLLDYPTSLQTIIGVDISPKGLARAAKMLHVKLNKE------ACNV 777
Query: 776 KSAVLFDGSITVFDSRLHGFDIGTCLEVIEHMEEDEASQFGNIVLSSFRPRILIVSTPNY 835
KSA L+DGSI FDSRLH DIGTCLEVIEHMEED+A +FG VLS F P++LIVSTPNY
Sbjct: 778 KSATLYDGSILEFDSRLHDVDIGTCLEVIEHMEEDQACEFGEKVLSLFHPKLLIVSTPNY 837
Query: 836 EYNAILQKSSSTIQEDDPDEKTQLQSCKFRNHDHKFEWTRDQFNCWATELAARHNYSVEF 895
E+N ILQ+S+ QE++ E Q KFRNHDHKFEWTR+QFN WA++L RHNYSVEF
Sbjct: 838 EFNTILQRSTPETQEENNSEP---QLPKFRNHDHKFEWTREQFNQWASKLGKRHNYSVEF 894
Query: 896 SGVGGSGDREPGFASQIAVFRSRTPPEEDDLLKDGDSAHHYKVIWEW 942
SGVGGSG+ EPGFASQIA+FR E+ S YKVIWEW
Sbjct: 895 SGVGGSGEVEPGFASQIAIFRREASSVEN---VAESSMQPYKVIWEW 938
>pdb|3JWH|A Chain A, Crystal Structure Analysis Of The Methyltransferase Domain
Of Bacterial-Avhen1-C
pdb|3JWH|B Chain B, Crystal Structure Analysis Of The Methyltransferase Domain
Of Bacterial-Avhen1-C
Length = 217
Score = 112 bits (280), Expect = 9e-25, Method: Compositional matrix adjust.
Identities = 63/181 (34%), Positives = 93/181 (51%), Gaps = 23/181 (12%)
Query: 738 LEKIVGVDISQKSLSRAAKIIHSKLSKKLDAAVPCTDVKSAVLFDGSITVFDSRLHGFDI 797
E+I GVD+S +SL +I +L + +P + L G++T D R HG+D
Sbjct: 53 FEQITGVDVSYRSL----EIAQERLDR---LRLPRNQWERLQLIQGALTYQDKRFHGYDA 105
Query: 798 GTCLEVIEHMEEDEASQFGNIVLSSFRPRILIVSTPNYEYNAILQKSSSTIQEDDPDEKT 857
T +EVIEH++ F ++ +P+I+IV+TPN EYN
Sbjct: 106 ATVIEVIEHLDLSRLGAFERVLFEFAQPKIVIVTTPNIEYNVKF---------------A 150
Query: 858 QLQSCKFRNHDHKFEWTRDQFNCWATELAARHNYSVEFSGVGGSGDREPGFASQIAVFRS 917
L + K R+ DH+FEWTR QF WA ++ R Y+V+F + G D E G +Q+AVF
Sbjct: 151 NLPAGKLRHKDHRFEWTRSQFQNWANKITERFAYNVQFQPI-GEADPEVGSPTQMAVFIH 209
Query: 918 R 918
R
Sbjct: 210 R 210
>pdb|3JWJ|A Chain A, Crystal Structure Analysis Of The Methyltransferase Domain
Of Bacterial-Avhen1-Cn
pdb|3JWJ|B Chain B, Crystal Structure Analysis Of The Methyltransferase Domain
Of Bacterial-Avhen1-Cn
Length = 202
Score = 111 bits (278), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 63/181 (34%), Positives = 93/181 (51%), Gaps = 23/181 (12%)
Query: 738 LEKIVGVDISQKSLSRAAKIIHSKLSKKLDAAVPCTDVKSAVLFDGSITVFDSRLHGFDI 797
E+I GVD+S +SL +I +L + +P + L G++T D R HG+D
Sbjct: 43 FEQITGVDVSYRSL----EIAQERLDR---LRLPRNQWERLQLIQGALTYQDKRFHGYDA 95
Query: 798 GTCLEVIEHMEEDEASQFGNIVLSSFRPRILIVSTPNYEYNAILQKSSSTIQEDDPDEKT 857
T +EVIEH++ F ++ +P+I+IV+TPN EYN
Sbjct: 96 ATVIEVIEHLDLSRLGAFERVLFEFAQPKIVIVTTPNIEYNVKF---------------A 140
Query: 858 QLQSCKFRNHDHKFEWTRDQFNCWATELAARHNYSVEFSGVGGSGDREPGFASQIAVFRS 917
L + K R+ DH+FEWTR QF WA ++ R Y+V+F + G D E G +Q+AVF
Sbjct: 141 NLPAGKLRHKDHRFEWTRSQFQNWANKITERFAYNVQFQPI-GEADPEVGSPTQMAVFIH 199
Query: 918 R 918
R
Sbjct: 200 R 200
>pdb|3JWI|A Chain A, Crystal Structure Analysis Of The Methyltransferase Domain
Of Bacterial-Cthen1-Cn
pdb|3JWI|B Chain B, Crystal Structure Analysis Of The Methyltransferase Domain
Of Bacterial-Cthen1-Cn
Length = 207
Score = 109 bits (272), Expect = 9e-24, Method: Compositional matrix adjust.
Identities = 64/179 (35%), Positives = 90/179 (50%), Gaps = 23/179 (12%)
Query: 737 ALEKIVGVDISQKSLSRAAKIIHSKLSKKLDAAVPCTDVKSAVLFDGSITVFDSRLHGFD 796
+ E+I GVD+S L RA + K+D +P K LF S+ D R G+D
Sbjct: 50 SFEQITGVDVSYSVLERAKDRL------KIDR-LPEMQRKRISLFQSSLVYRDKRFSGYD 102
Query: 797 IGTCLEVIEHMEEDEASQFGNIVLSSFRPRILIVSTPNYEYNAILQKSSSTIQEDDPDEK 856
T +EVIEH++E+ F ++ RP+ +IVSTPN EYN Q
Sbjct: 103 AATVIEVIEHLDENRLQAFEKVLFEFTRPQTVIVSTPNKEYNFHYQ-------------- 148
Query: 857 TQLQSCKFRNHDHKFEWTRDQFNCWATELAARHNYSVEFSGVGGSGDREPGFASQIAVF 915
L R+ DH+FEWTR +F WA ++A ++ YSV F +G D E G +Q+ VF
Sbjct: 149 -NLFEGNLRHRDHRFEWTRKEFETWAVKVAEKYGYSVRFLQIGEIDD-EFGSPTQMGVF 205
>pdb|3JWG|A Chain A, Crystal Structure Analysis Of The Methyltransferase Domain
Of Bacterial-Cthen1-C
Length = 219
Score = 106 bits (264), Expect = 6e-23, Method: Compositional matrix adjust.
Identities = 63/179 (35%), Positives = 89/179 (49%), Gaps = 23/179 (12%)
Query: 737 ALEKIVGVDISQKSLSRAAKIIHSKLSKKLDAAVPCTDVKSAVLFDGSITVFDSRLHGFD 796
+ E+I GVD+S L RA + K+D +P K LF S+ D R G+D
Sbjct: 52 SFEQITGVDVSYSVLERAKDRL------KIDR-LPEMQRKRISLFQSSLVYRDKRFSGYD 104
Query: 797 IGTCLEVIEHMEEDEASQFGNIVLSSFRPRILIVSTPNYEYNAILQKSSSTIQEDDPDEK 856
T +EVIEH++E+ F ++ RP+ +IVSTPN EYN
Sbjct: 105 AATVIEVIEHLDENRLQAFEKVLFEFTRPQTVIVSTPNKEYNF---------------HY 149
Query: 857 TQLQSCKFRNHDHKFEWTRDQFNCWATELAARHNYSVEFSGVGGSGDREPGFASQIAVF 915
L R+ DH+FEWTR +F WA ++A ++ YSV F +G D E G +Q+ VF
Sbjct: 150 GNLFEGNLRHRDHRFEWTRKEFQTWAVKVAEKYGYSVRFLQIGEIDD-EFGSPTQMGVF 207
>pdb|3UQI|A Chain A, Crystallographic Structure Of Fkbp12 From Aedes Aegypti
pdb|2LPV|A Chain A, Solution Structure Of Fkbp12 From Aedes Aegypti
Length = 108
Score = 33.1 bits (74), Expect = 0.68, Method: Composition-based stats.
Identities = 20/73 (27%), Positives = 33/73 (45%), Gaps = 1/73 (1%)
Query: 566 GIYCLSIGGPDSGIYPSNGCLSFISYSVSLVIEGETMKXXXXXXXXXXXXMGTGAVIPQV 625
G+ +++ D YP G ++ + Y+ +L +G+ +G G VI
Sbjct: 2 GVQVVTLAAGDEATYPKAGQVAVVHYTGTLA-DGKVFDSSRTRGKPFRFTVGRGEVIRGW 60
Query: 626 EVVTAQMSVGQSA 638
+ AQMSVGQ A
Sbjct: 61 DEGVAQMSVGQRA 73
>pdb|3IVF|A Chain A, Crystal Structure Of The Talin Head Ferm Domain
Length = 371
Score = 33.1 bits (74), Expect = 0.78, Method: Compositional matrix adjust.
Identities = 24/93 (25%), Positives = 45/93 (48%), Gaps = 12/93 (12%)
Query: 66 EFSVVSETFKKKKDAEQSAAE--KALEKLGIDPSPNVPSAEEAWDKLIASVKHLFSNEFL 123
E+S+V E ++KKD E + + + L + G+ E + L+ K +S++ +
Sbjct: 126 EYSLVRELMEEKKDDELNWLDHGRTLREQGV----------EEHETLLLRRKFFYSDQNV 175
Query: 124 SSQSPLRGHFIAALRRDGDLYGSVPASVIAVCD 156
S+ P++ + + RD L GS P S C+
Sbjct: 176 DSRDPVQLNLLYVQARDDILNGSHPVSFDKACE 208
>pdb|4B3K|A Chain A, Family 1 6-phospho-beta-d Glycosidase From Streptococcus
Pyogenes
pdb|4B3K|B Chain B, Family 1 6-phospho-beta-d Glycosidase From Streptococcus
Pyogenes
pdb|4B3K|C Chain C, Family 1 6-phospho-beta-d Glycosidase From Streptococcus
Pyogenes
pdb|4B3K|D Chain D, Family 1 6-phospho-beta-d Glycosidase From Streptococcus
Pyogenes
pdb|4B3K|E Chain E, Family 1 6-phospho-beta-d Glycosidase From Streptococcus
Pyogenes
pdb|4B3K|F Chain F, Family 1 6-phospho-beta-d Glycosidase From Streptococcus
Pyogenes
pdb|4B3L|A Chain A, Family 1 6-phospho-beta-d Glycosidase From Streptococcus
Pyogenes
pdb|4B3L|B Chain B, Family 1 6-phospho-beta-d Glycosidase From Streptococcus
Pyogenes
pdb|4B3L|C Chain C, Family 1 6-phospho-beta-d Glycosidase From Streptococcus
Pyogenes
pdb|4B3L|D Chain D, Family 1 6-phospho-beta-d Glycosidase From Streptococcus
Pyogenes
pdb|4B3L|E Chain E, Family 1 6-phospho-beta-d Glycosidase From Streptococcus
Pyogenes
pdb|4B3L|F Chain F, Family 1 6-phospho-beta-d Glycosidase From Streptococcus
Pyogenes
Length = 479
Score = 30.0 bits (66), Expect = 6.7, Method: Compositional matrix adjust.
Identities = 24/110 (21%), Positives = 55/110 (50%), Gaps = 8/110 (7%)
Query: 67 FSVVSETFKKKKDAEQSAAEKALEKLG--IDPSPNVPSAEEAWDKLIASVKHLFSNEFLS 124
+++ T K + + AE + ++G ++ +P P+++ D A L++N+ L
Sbjct: 193 YNLALATAKVIQAYRRGPAELSDGRIGTILNLTPAYPASQSEADMAAAHFAELWNND-LF 251
Query: 125 SQSPLRGHF----IAALRRDGDLYGSVPASVIAVCDSKLANL-CKLINPK 169
++ + G F +A L++DG L+ S P + + ++++ L +PK
Sbjct: 252 MEAAVHGKFPEELVAVLKKDGVLWQSTPEELALIAENRVDYLGLNFYHPK 301
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.318 0.133 0.392
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 26,082,933
Number of Sequences: 62578
Number of extensions: 1016160
Number of successful extensions: 2407
Number of sequences better than 100.0: 14
Number of HSP's better than 100.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 4
Number of HSP's that attempted gapping in prelim test: 2382
Number of HSP's gapped (non-prelim): 15
length of query: 952
length of database: 14,973,337
effective HSP length: 108
effective length of query: 844
effective length of database: 8,214,913
effective search space: 6933386572
effective search space used: 6933386572
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 56 (26.2 bits)