Query 002218
Match_columns 952
No_of_seqs 408 out of 3333
Neff 4.4
Searched_HMMs 46136
Date Thu Mar 28 19:11:54 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/002218.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/002218hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG1045 Uncharacterized conser 100.0 7.9E-42 1.7E-46 374.3 4.4 382 282-732 6-396 (404)
2 COG2227 UbiG 2-polyprenyl-3-me 99.7 7.9E-18 1.7E-22 177.5 10.3 176 697-902 40-220 (243)
3 PLN02396 hexaprenyldihydroxybe 99.7 2.1E-16 4.5E-21 174.1 18.7 176 699-902 106-294 (322)
4 KOG1045 Uncharacterized conser 99.6 4.7E-17 1E-21 180.1 3.9 242 686-942 20-267 (404)
5 PRK11036 putative S-adenosyl-L 99.6 3.3E-14 7.2E-19 150.3 19.2 189 686-899 11-209 (255)
6 COG2226 UbiE Methylase involve 99.6 8.8E-15 1.9E-19 155.4 14.7 120 696-830 34-154 (238)
7 PRK11088 rrmA 23S rRNA methylt 99.6 1E-14 2.2E-19 155.9 13.5 154 650-838 18-187 (272)
8 KOG1270 Methyltransferases [Co 99.6 4.2E-15 9.2E-20 158.4 10.0 175 696-899 61-251 (282)
9 PF01209 Ubie_methyltran: ubiE 99.6 8.7E-15 1.9E-19 154.6 11.8 113 704-830 38-151 (233)
10 PLN02233 ubiquinone biosynthes 99.6 4.6E-14 1E-18 150.7 17.4 120 705-835 65-185 (261)
11 PF13489 Methyltransf_23: Meth 99.6 3.1E-14 6.7E-19 136.6 13.0 144 704-894 12-159 (161)
12 TIGR02021 BchM-ChlM magnesium 99.6 2E-13 4.2E-18 140.8 18.8 160 704-897 44-205 (219)
13 PF08241 Methyltransf_11: Meth 99.5 4.1E-14 8.9E-19 123.8 10.6 94 718-830 1-95 (95)
14 PF12847 Methyltransf_18: Meth 99.5 1.7E-13 3.6E-18 125.4 13.2 106 713-833 1-112 (112)
15 PTZ00098 phosphoethanolamine N 99.5 2.4E-13 5.2E-18 145.4 16.1 127 692-834 31-158 (263)
16 PLN02244 tocopherol O-methyltr 99.5 4.8E-13 1E-17 148.1 18.4 108 712-834 117-225 (340)
17 PRK14103 trans-aconitate 2-met 99.5 4E-13 8.7E-18 141.9 16.1 107 705-834 21-128 (255)
18 PLN02585 magnesium protoporphy 99.5 1.3E-12 2.8E-17 144.0 19.8 170 700-900 128-301 (315)
19 PF02353 CMAS: Mycolic acid cy 99.5 2E-13 4.3E-18 147.6 12.8 150 655-831 14-165 (273)
20 PRK10258 biotin biosynthesis p 99.5 9E-13 1.9E-17 138.4 17.4 119 697-837 26-145 (251)
21 PRK11207 tellurite resistance 99.5 3.4E-13 7.4E-18 138.2 13.6 110 705-830 22-132 (197)
22 PF13847 Methyltransf_31: Meth 99.5 3.9E-13 8.4E-18 131.1 12.5 106 713-834 3-112 (152)
23 COG2230 Cfa Cyclopropane fatty 99.5 6E-13 1.3E-17 144.3 14.6 159 631-826 10-169 (283)
24 PRK15068 tRNA mo(5)U34 methylt 99.5 1E-12 2.2E-17 144.8 16.0 116 702-833 111-227 (322)
25 PRK15451 tRNA cmo(5)U34 methyl 99.4 1.3E-12 2.8E-17 138.1 15.3 124 696-832 37-164 (247)
26 TIGR02752 MenG_heptapren 2-hep 99.4 1.8E-12 3.9E-17 133.9 15.8 117 703-833 35-152 (231)
27 PRK07580 Mg-protoporphyrin IX 99.4 7.1E-12 1.5E-16 128.8 19.1 159 703-895 50-211 (230)
28 PRK06202 hypothetical protein; 99.4 2.9E-12 6.4E-17 133.4 16.1 107 712-835 59-169 (232)
29 PF13649 Methyltransf_25: Meth 99.4 3E-13 6.6E-18 123.3 7.6 97 717-826 1-100 (101)
30 PF07021 MetW: Methionine bios 99.4 2.6E-12 5.7E-17 132.5 15.2 152 703-894 5-163 (193)
31 TIGR00477 tehB tellurite resis 99.4 2.4E-12 5.3E-17 131.7 13.5 110 704-830 21-131 (195)
32 TIGR00740 methyltransferase, p 99.4 3.9E-12 8.4E-17 133.1 15.0 125 696-833 34-162 (239)
33 PRK12335 tellurite resistance 99.4 4.8E-12 1E-16 136.7 16.0 106 711-833 118-224 (287)
34 TIGR00452 methyltransferase, p 99.4 4.9E-12 1.1E-16 139.4 16.2 162 702-899 110-275 (314)
35 TIGR01983 UbiG ubiquinone bios 99.4 1.5E-11 3.2E-16 126.2 18.6 175 697-900 25-206 (224)
36 PLN02336 phosphoethanolamine N 99.4 5.4E-12 1.2E-16 144.4 16.5 115 703-834 256-371 (475)
37 TIGR02081 metW methionine bios 99.4 1E-11 2.2E-16 126.2 16.5 156 704-894 6-163 (194)
38 PRK05785 hypothetical protein; 99.4 3.6E-12 7.8E-17 133.8 12.8 100 713-836 51-152 (226)
39 TIGR03587 Pse_Me-ase pseudamin 99.4 6.6E-12 1.4E-16 130.1 13.8 116 697-832 26-142 (204)
40 PRK11705 cyclopropane fatty ac 99.4 8.2E-12 1.8E-16 140.8 15.0 161 632-833 107-268 (383)
41 PRK08317 hypothetical protein; 99.3 1.4E-11 3.1E-16 125.2 15.3 123 697-834 3-126 (241)
42 PRK05134 bifunctional 3-demeth 99.3 3.9E-11 8.5E-16 124.4 18.6 175 696-900 31-208 (233)
43 PRK01683 trans-aconitate 2-met 99.3 6.7E-12 1.5E-16 132.2 12.9 110 705-835 23-133 (258)
44 PF03848 TehB: Tellurite resis 99.3 1.1E-11 2.4E-16 128.2 13.5 111 705-832 22-133 (192)
45 TIGR02072 BioC biotin biosynth 99.3 1.1E-11 2.3E-16 126.6 12.8 106 713-837 34-140 (240)
46 smart00828 PKS_MT Methyltransf 99.3 3.4E-11 7.4E-16 123.9 15.4 105 715-834 1-106 (224)
47 PF05401 NodS: Nodulation prot 99.3 1.9E-11 4E-16 126.8 12.7 122 694-833 22-147 (201)
48 TIGR02469 CbiT precorrin-6Y C5 99.3 5.7E-11 1.2E-15 109.6 13.4 113 702-832 8-122 (124)
49 TIGR03840 TMPT_Se_Te thiopurin 99.3 4.5E-11 9.8E-16 125.0 13.9 117 713-834 34-154 (213)
50 PF08242 Methyltransf_12: Meth 99.2 1.6E-12 3.5E-17 117.5 1.6 96 718-828 1-98 (99)
51 PRK11873 arsM arsenite S-adeno 99.2 4.9E-11 1.1E-15 126.9 13.1 108 711-832 75-183 (272)
52 PLN02490 MPBQ/MSBQ methyltrans 99.2 1.3E-10 2.7E-15 129.6 16.6 103 713-833 113-216 (340)
53 PRK00216 ubiE ubiquinone/menaq 99.2 1.4E-10 3E-15 118.8 15.0 115 705-832 43-158 (239)
54 PRK00121 trmB tRNA (guanine-N( 99.2 2.1E-11 4.7E-16 125.6 8.9 130 695-839 24-163 (202)
55 PRK13944 protein-L-isoaspartat 99.2 1.6E-10 3.5E-15 119.3 14.7 113 702-833 61-174 (205)
56 TIGR00080 pimt protein-L-isoas 99.2 1.6E-10 3.5E-15 119.6 14.1 113 700-832 64-177 (215)
57 PLN02336 phosphoethanolamine N 99.2 9.2E-11 2E-15 134.4 13.1 111 703-830 27-140 (475)
58 KOG1540 Ubiquinone biosynthesi 99.2 2.4E-10 5.2E-15 122.1 14.8 130 702-842 89-224 (296)
59 TIGR01934 MenG_MenH_UbiE ubiqu 99.2 3.1E-10 6.7E-15 115.1 15.0 114 703-832 29-143 (223)
60 PRK13942 protein-L-isoaspartat 99.2 2.1E-10 4.6E-15 119.2 14.1 114 699-832 62-176 (212)
61 TIGR00138 gidB 16S rRNA methyl 99.2 3E-10 6.4E-15 115.9 13.4 103 711-833 40-143 (181)
62 smart00138 MeTrc Methyltransfe 99.2 1.9E-10 4E-15 123.7 12.6 119 713-831 99-241 (264)
63 KOG1271 Methyltransferases [Ge 99.2 7.7E-11 1.7E-15 120.7 9.0 168 662-844 13-193 (227)
64 PRK13255 thiopurine S-methyltr 99.2 3.7E-10 8.1E-15 118.5 14.0 115 713-832 37-155 (218)
65 PRK00107 gidB 16S rRNA methylt 99.1 5.1E-10 1.1E-14 115.2 13.7 99 713-831 45-144 (187)
66 PF08003 Methyltransf_9: Prote 99.1 4.9E-10 1.1E-14 122.7 13.1 166 701-900 103-270 (315)
67 PRK08287 cobalt-precorrin-6Y C 99.1 7.9E-10 1.7E-14 111.8 13.7 119 694-832 12-131 (187)
68 PRK06922 hypothetical protein; 99.1 5.7E-10 1.2E-14 132.4 13.7 109 710-832 415-537 (677)
69 PF05175 MTS: Methyltransferas 99.1 2.2E-09 4.7E-14 107.8 15.6 138 693-844 11-153 (170)
70 TIGR00537 hemK_rel_arch HemK-r 99.1 2.3E-09 5E-14 107.7 14.8 113 704-834 10-142 (179)
71 TIGR00091 tRNA (guanine-N(7)-) 99.1 6E-10 1.3E-14 114.0 10.4 115 713-840 16-140 (194)
72 PRK00312 pcm protein-L-isoaspa 99.1 1.8E-09 3.8E-14 111.3 13.7 108 703-833 68-176 (212)
73 COG4106 Tam Trans-aconitate me 99.1 3.4E-10 7.3E-15 118.7 8.1 109 706-835 23-132 (257)
74 PLN03075 nicotianamine synthas 99.0 1.7E-09 3.8E-14 118.5 13.9 109 713-833 123-234 (296)
75 TIGR02716 C20_methyl_CrtF C-20 99.0 2.9E-09 6.2E-14 115.8 14.4 114 704-832 140-254 (306)
76 TIGR03438 probable methyltrans 99.0 2.6E-09 5.6E-14 116.7 13.6 109 713-832 63-177 (301)
77 PF13659 Methyltransf_26: Meth 99.0 1.3E-09 2.9E-14 100.6 8.7 108 714-834 1-117 (117)
78 PRK07402 precorrin-6B methylas 99.0 8.1E-09 1.8E-13 105.3 14.2 122 695-835 22-145 (196)
79 TIGR03534 RF_mod_PrmC protein- 99.0 1E-08 2.2E-13 106.7 15.0 120 699-833 74-218 (251)
80 TIGR01177 conserved hypothetic 98.9 6.2E-09 1.3E-13 114.9 13.1 118 703-835 172-297 (329)
81 PRK15001 SAM-dependent 23S rib 98.9 1.5E-08 3.2E-13 114.7 15.9 118 703-831 218-339 (378)
82 PRK14121 tRNA (guanine-N(7)-)- 98.9 8.5E-09 1.8E-13 116.8 12.9 123 705-840 114-243 (390)
83 PRK00377 cbiT cobalt-precorrin 98.9 1.7E-08 3.7E-13 103.4 14.0 114 705-834 32-147 (198)
84 PRK13256 thiopurine S-methyltr 98.9 1.2E-08 2.6E-13 108.2 13.2 118 712-832 42-163 (226)
85 cd02440 AdoMet_MTases S-adenos 98.9 1.9E-08 4.2E-13 86.4 12.0 101 716-831 1-103 (107)
86 KOG4300 Predicted methyltransf 98.9 1.2E-08 2.6E-13 106.6 12.6 109 708-832 71-182 (252)
87 PRK14968 putative methyltransf 98.9 3.2E-08 6.9E-13 98.4 14.9 116 705-834 15-150 (188)
88 PRK09489 rsmC 16S ribosomal RN 98.9 2.3E-08 5E-13 111.7 15.5 115 703-833 186-304 (342)
89 PRK14967 putative methyltransf 98.9 3.3E-08 7.2E-13 103.1 15.1 117 711-843 34-171 (223)
90 PRK13943 protein-L-isoaspartat 98.9 1.6E-08 3.4E-13 112.3 13.2 110 703-832 70-180 (322)
91 PF01135 PCMT: Protein-L-isoas 98.9 7.1E-09 1.5E-13 108.6 9.9 115 699-833 58-173 (209)
92 TIGR03533 L3_gln_methyl protei 98.8 4.5E-08 9.8E-13 106.5 15.3 110 712-834 120-253 (284)
93 TIGR00406 prmA ribosomal prote 98.8 3.2E-08 6.9E-13 107.6 13.6 102 713-834 159-261 (288)
94 TIGR00536 hemK_fam HemK family 98.8 4.9E-08 1.1E-12 105.7 14.9 107 715-835 116-247 (284)
95 PRK04266 fibrillarin; Provisio 98.8 3.5E-08 7.6E-13 104.4 13.4 106 709-834 68-178 (226)
96 PF03291 Pox_MCEL: mRNA cappin 98.8 1.7E-08 3.7E-13 112.4 11.5 121 713-837 62-191 (331)
97 PRK00517 prmA ribosomal protei 98.8 3.4E-08 7.4E-13 105.0 12.3 95 712-833 118-214 (250)
98 KOG1541 Predicted protein carb 98.8 2.6E-08 5.6E-13 105.1 10.9 114 697-830 32-158 (270)
99 PRK09328 N5-glutamine S-adenos 98.8 7.6E-08 1.7E-12 102.1 14.2 115 703-831 98-237 (275)
100 COG2518 Pcm Protein-L-isoaspar 98.8 7.1E-08 1.5E-12 101.3 13.1 109 702-833 61-170 (209)
101 COG2264 PrmA Ribosomal protein 98.8 4.8E-08 1E-12 107.4 11.9 104 713-836 162-267 (300)
102 PF05724 TPMT: Thiopurine S-me 98.8 2.9E-08 6.2E-13 104.6 9.7 158 709-902 33-194 (218)
103 KOG2899 Predicted methyltransf 98.8 1.4E-07 3E-12 100.8 14.7 195 712-926 57-285 (288)
104 PRK11188 rrmJ 23S rRNA methylt 98.8 7.6E-08 1.6E-12 100.4 12.7 109 712-843 50-177 (209)
105 PRK11805 N5-glutamine S-adenos 98.8 1.1E-07 2.4E-12 104.7 14.6 108 714-834 134-265 (307)
106 smart00650 rADc Ribosomal RNA 98.7 6.9E-08 1.5E-12 96.5 11.6 87 704-808 4-90 (169)
107 PRK14904 16S rRNA methyltransf 98.7 7.4E-08 1.6E-12 110.7 12.5 118 704-835 241-380 (445)
108 TIGR00446 nop2p NOL1/NOP2/sun 98.7 8.5E-08 1.9E-12 103.1 11.3 116 707-834 65-201 (264)
109 PRK14901 16S rRNA methyltransf 98.7 1.4E-07 3E-12 108.2 13.5 120 703-834 242-386 (434)
110 COG2242 CobL Precorrin-6B meth 98.7 2.5E-07 5.5E-12 95.6 13.6 116 699-833 20-136 (187)
111 PRK14903 16S rRNA methyltransf 98.7 2.1E-07 4.5E-12 106.9 13.5 119 704-834 228-368 (431)
112 TIGR03704 PrmC_rel_meth putati 98.6 5.5E-07 1.2E-11 96.5 15.2 130 697-842 69-226 (251)
113 KOG3010 Methyltransferase [Gen 98.6 4.4E-08 9.6E-13 104.4 6.6 119 686-826 10-129 (261)
114 PRK14902 16S rRNA methyltransf 98.6 2.4E-07 5.2E-12 106.4 12.3 119 704-834 241-381 (444)
115 PRK03522 rumB 23S rRNA methylu 98.6 3.6E-07 7.9E-12 100.5 13.1 88 699-801 159-247 (315)
116 PHA03411 putative methyltransf 98.6 5.2E-07 1.1E-11 98.5 14.1 97 690-810 46-142 (279)
117 TIGR00563 rsmB ribosomal RNA s 98.6 3.9E-07 8.4E-12 104.2 13.6 120 703-835 228-371 (426)
118 PRK00811 spermidine synthase; 98.6 3.4E-07 7.3E-12 99.7 12.5 110 713-830 76-188 (283)
119 PRK10901 16S rRNA methyltransf 98.6 4.7E-07 1E-11 103.7 14.2 116 704-833 235-373 (427)
120 PLN02781 Probable caffeoyl-CoA 98.6 8.4E-07 1.8E-11 94.2 14.9 164 702-901 57-226 (234)
121 KOG1975 mRNA cap methyltransfe 98.6 2.3E-07 4.9E-12 102.4 10.8 140 690-837 90-242 (389)
122 PRK13168 rumA 23S rRNA m(5)U19 98.6 4.8E-07 1E-11 104.0 13.1 115 697-832 281-400 (443)
123 PF06325 PrmA: Ribosomal prote 98.6 3.6E-07 7.9E-12 100.5 11.5 100 712-833 160-260 (295)
124 PTZ00146 fibrillarin; Provisio 98.6 4.3E-07 9.4E-12 99.8 12.0 103 711-831 130-236 (293)
125 TIGR00438 rrmJ cell division p 98.6 3.1E-07 6.7E-12 93.2 10.0 99 712-833 31-147 (188)
126 PLN02232 ubiquinone biosynthes 98.5 3.4E-07 7.4E-12 91.4 9.8 81 742-833 1-82 (160)
127 COG4123 Predicted O-methyltran 98.5 4.5E-07 9.8E-12 97.6 11.2 125 706-842 37-180 (248)
128 PRK14966 unknown domain/N5-glu 98.5 1.5E-06 3.3E-11 99.7 15.2 89 697-801 237-326 (423)
129 COG4976 Predicted methyltransf 98.5 4.6E-08 1E-12 103.7 2.6 100 713-834 125-227 (287)
130 COG2813 RsmC 16S RNA G1207 met 98.5 1.4E-06 3E-11 96.0 13.9 110 702-826 147-259 (300)
131 PRK15128 23S rRNA m(5)C1962 me 98.5 5.3E-06 1.2E-10 94.7 18.5 141 713-903 220-374 (396)
132 PHA03412 putative methyltransf 98.5 1.4E-06 3E-11 93.5 12.1 101 713-831 49-161 (241)
133 PRK04457 spermidine synthase; 98.4 1.4E-06 2.9E-11 94.1 11.8 109 712-832 65-177 (262)
134 PRK01544 bifunctional N5-gluta 98.4 3.3E-06 7.1E-11 99.1 15.5 108 713-833 138-270 (506)
135 PLN02366 spermidine synthase 98.4 2.7E-06 5.8E-11 94.2 13.7 110 712-830 90-203 (308)
136 KOG2361 Predicted methyltransf 98.4 1.6E-06 3.4E-11 92.9 10.7 104 715-831 73-182 (264)
137 COG2263 Predicted RNA methylas 98.4 1.6E-06 3.5E-11 90.0 10.3 78 706-801 38-115 (198)
138 TIGR00417 speE spermidine synt 98.4 3.6E-06 7.9E-11 90.8 13.2 111 712-831 71-185 (270)
139 PRK14896 ksgA 16S ribosomal RN 98.4 1.6E-06 3.5E-11 92.9 10.4 87 702-808 18-104 (258)
140 PF01596 Methyltransf_3: O-met 98.4 5.6E-06 1.2E-10 86.9 13.9 164 696-900 28-197 (205)
141 PF05891 Methyltransf_PK: AdoM 98.4 3.2E-06 6.9E-11 89.5 11.8 147 713-898 55-201 (218)
142 PRK10909 rsmD 16S rRNA m(2)G96 98.4 3.2E-06 6.9E-11 88.2 11.7 117 701-834 40-161 (199)
143 PRK00274 ksgA 16S ribosomal RN 98.3 1.5E-06 3.2E-11 94.0 9.5 82 702-801 31-112 (272)
144 PF00891 Methyltransf_2: O-met 98.3 3E-06 6.5E-11 89.0 11.4 103 706-831 93-198 (241)
145 PLN02476 O-methyltransferase 98.3 7.6E-06 1.6E-10 89.6 14.7 164 697-901 102-271 (278)
146 TIGR00479 rumA 23S rRNA (uraci 98.3 3.6E-06 7.8E-11 96.2 12.8 87 699-800 278-368 (431)
147 PRK01581 speE spermidine synth 98.3 4.6E-06 1E-10 94.3 12.8 115 712-832 149-267 (374)
148 TIGR02085 meth_trns_rumB 23S r 98.3 4.9E-06 1.1E-10 94.0 13.1 111 702-832 222-334 (374)
149 COG2519 GCD14 tRNA(1-methylade 98.3 4.1E-06 8.9E-11 90.3 10.8 122 696-836 77-199 (256)
150 TIGR00755 ksgA dimethyladenosi 98.3 7.3E-06 1.6E-10 87.5 12.0 81 701-800 17-100 (253)
151 PRK04148 hypothetical protein; 98.2 9.5E-06 2.1E-10 80.3 11.8 104 703-834 6-111 (134)
152 COG2890 HemK Methylase of poly 98.2 4E-06 8.7E-11 91.6 9.8 71 716-801 113-183 (280)
153 PRK03612 spermidine synthase; 98.2 5.7E-06 1.2E-10 97.3 11.7 113 712-832 296-415 (521)
154 PF01170 UPF0020: Putative RNA 98.2 8.9E-06 1.9E-10 83.2 11.4 136 696-842 11-160 (179)
155 PF06080 DUF938: Protein of un 98.2 2.2E-05 4.7E-10 82.7 14.1 161 716-917 28-204 (204)
156 PTZ00338 dimethyladenosine tra 98.2 5.7E-06 1.2E-10 91.1 10.2 90 702-808 25-114 (294)
157 PRK11783 rlmL 23S rRNA m(2)G24 98.2 5E-06 1.1E-10 101.0 10.1 107 713-831 538-655 (702)
158 PF02390 Methyltransf_4: Putat 98.2 5.8E-06 1.3E-10 85.8 8.5 114 715-841 19-142 (195)
159 KOG3420 Predicted RNA methylas 98.2 3.4E-06 7.4E-11 84.6 6.4 94 694-802 29-122 (185)
160 PLN02672 methionine S-methyltr 98.1 1.3E-05 2.9E-10 100.7 12.1 86 714-800 119-209 (1082)
161 KOG1499 Protein arginine N-met 98.1 1.4E-05 3.1E-10 89.3 10.7 109 711-833 58-167 (346)
162 TIGR00478 tly hemolysin TlyA f 98.1 2.4E-05 5.2E-10 83.5 11.1 102 712-836 74-176 (228)
163 PF10294 Methyltransf_16: Puta 98.0 4.9E-05 1.1E-09 77.3 12.1 127 695-834 21-158 (173)
164 TIGR02143 trmA_only tRNA (urac 98.0 1.8E-05 3.9E-10 89.0 9.3 77 696-788 181-257 (353)
165 PLN02589 caffeoyl-CoA O-methyl 98.0 0.0001 2.2E-09 79.6 14.6 117 699-831 65-188 (247)
166 COG1041 Predicted DNA modifica 98.0 4.2E-05 9.1E-10 85.9 11.7 128 691-833 174-311 (347)
167 PF08704 GCD14: tRNA methyltra 98.0 4.3E-05 9.2E-10 82.6 11.3 123 696-836 23-150 (247)
168 PF05219 DREV: DREV methyltran 98.0 6E-05 1.3E-09 81.8 12.2 93 713-831 94-187 (265)
169 PRK10611 chemotaxis methyltran 98.0 3E-05 6.4E-10 85.4 10.1 118 713-830 115-260 (287)
170 COG4122 Predicted O-methyltran 98.0 6E-05 1.3E-09 80.2 11.9 117 699-831 45-164 (219)
171 COG0500 SmtA SAM-dependent met 98.0 0.00014 3E-09 63.1 12.1 103 717-835 52-158 (257)
172 PF01739 CheR: CheR methyltran 97.9 4.8E-05 1E-09 79.5 10.5 121 713-833 31-175 (196)
173 COG0220 Predicted S-adenosylme 97.9 4.9E-05 1.1E-09 81.2 10.0 114 714-840 49-172 (227)
174 PF08123 DOT1: Histone methyla 97.9 4.9E-05 1.1E-09 80.0 9.2 133 695-834 24-159 (205)
175 PRK11727 23S rRNA mA1618 methy 97.8 6.1E-05 1.3E-09 84.2 9.7 98 695-803 85-198 (321)
176 PRK05031 tRNA (uracil-5-)-meth 97.8 5.3E-05 1.2E-09 85.5 8.9 76 697-788 191-266 (362)
177 PRK04338 N(2),N(2)-dimethylgua 97.8 0.00017 3.6E-09 82.3 12.8 109 704-831 47-157 (382)
178 PF05185 PRMT5: PRMT5 arginine 97.8 0.00013 2.7E-09 85.0 11.6 104 714-830 187-294 (448)
179 TIGR00095 RNA methyltransferas 97.8 0.00033 7.2E-09 72.4 13.4 125 695-834 30-161 (189)
180 KOG2940 Predicted methyltransf 97.8 3.5E-05 7.7E-10 82.2 6.0 101 713-831 72-172 (325)
181 PF09243 Rsm22: Mitochondrial 97.8 0.00015 3.3E-09 79.0 10.9 111 711-834 31-141 (274)
182 PLN02823 spermine synthase 97.7 0.00026 5.7E-09 79.6 12.7 108 713-830 103-217 (336)
183 PRK00050 16S rRNA m(4)C1402 me 97.7 7E-05 1.5E-09 82.8 7.6 85 703-801 9-97 (296)
184 TIGR03439 methyl_EasF probable 97.7 0.00027 5.9E-09 79.0 12.0 108 713-832 76-197 (319)
185 KOG1661 Protein-L-isoaspartate 97.7 0.0002 4.4E-09 75.8 10.2 132 695-838 66-199 (237)
186 PF05958 tRNA_U5-meth_tr: tRNA 97.7 0.00015 3.2E-09 81.8 9.6 77 696-788 180-256 (352)
187 COG2265 TrmA SAM-dependent met 97.7 0.00015 3.3E-09 84.0 9.5 90 696-800 276-368 (432)
188 COG1352 CheR Methylase of chem 97.6 0.00033 7.2E-09 76.7 11.4 118 713-830 96-239 (268)
189 COG0030 KsgA Dimethyladenosine 97.6 0.00023 4.9E-09 77.6 9.4 89 702-808 19-108 (259)
190 PF05148 Methyltransf_8: Hypot 97.6 0.0002 4.3E-09 75.9 8.5 111 688-834 48-160 (219)
191 PF02475 Met_10: Met-10+ like- 97.6 0.00016 3.4E-09 76.0 7.8 119 688-828 79-197 (200)
192 PF09445 Methyltransf_15: RNA 97.6 0.00047 1E-08 70.5 10.8 113 715-842 1-130 (163)
193 PF03141 Methyltransf_29: Puta 97.6 7E-05 1.5E-09 87.2 5.4 112 702-834 102-221 (506)
194 COG3963 Phospholipid N-methylt 97.6 0.00055 1.2E-08 70.5 11.1 111 703-830 38-154 (194)
195 PRK01544 bifunctional N5-gluta 97.6 0.00025 5.5E-09 83.5 9.7 115 713-840 347-470 (506)
196 COG0421 SpeE Spermidine syntha 97.5 0.00048 1E-08 75.9 10.9 125 697-832 61-189 (282)
197 PF00035 dsrm: Double-stranded 97.5 0.00015 3.2E-09 61.5 5.1 36 57-92 32-67 (67)
198 PF12147 Methyltransf_20: Puta 97.5 0.0018 3.8E-08 71.8 14.5 109 712-832 134-249 (311)
199 KOG1331 Predicted methyltransf 97.5 9.6E-05 2.1E-09 81.0 4.5 91 713-826 45-136 (293)
200 PF13679 Methyltransf_32: Meth 97.5 0.001 2.2E-08 65.3 11.2 104 712-834 24-133 (141)
201 KOG1500 Protein arginine N-met 97.5 0.00061 1.3E-08 76.1 10.5 106 711-832 175-281 (517)
202 KOG1269 SAM-dependent methyltr 97.5 0.0002 4.4E-09 81.3 7.1 103 713-830 110-212 (364)
203 PRK11933 yebU rRNA (cytosine-C 97.4 0.0016 3.4E-08 76.5 13.0 113 710-834 110-244 (470)
204 PRK11783 rlmL 23S rRNA m(2)G24 97.4 0.0021 4.5E-08 78.7 14.4 143 688-841 164-356 (702)
205 KOG3045 Predicted RNA methylas 97.4 0.00054 1.2E-08 74.6 8.1 113 688-838 156-270 (325)
206 PRK00536 speE spermidine synth 97.3 0.0015 3.3E-08 71.4 11.5 99 712-831 71-169 (262)
207 PF01564 Spermine_synth: Sperm 97.3 0.0016 3.5E-08 70.1 11.3 112 712-832 75-191 (246)
208 COG0116 Predicted N6-adenine-s 97.3 0.0019 4.2E-08 73.7 11.8 136 688-834 166-346 (381)
209 KOG3178 Hydroxyindole-O-methyl 97.3 0.0014 3E-08 73.8 10.6 145 714-895 178-327 (342)
210 KOG2904 Predicted methyltransf 97.2 0.0014 3E-08 72.0 9.8 94 696-801 128-229 (328)
211 COG2520 Predicted methyltransf 97.2 0.0018 3.9E-08 73.2 10.4 117 688-826 166-282 (341)
212 COG1092 Predicted SAM-dependen 97.2 0.011 2.3E-07 68.2 16.7 108 713-833 217-337 (393)
213 PF02384 N6_Mtase: N-6 DNA Met 97.2 0.0024 5.1E-08 69.9 11.0 122 703-834 36-185 (311)
214 PF07942 N2227: N2227-like pro 97.1 0.0095 2.1E-07 65.6 14.9 155 713-898 56-242 (270)
215 smart00358 DSRM Double-strande 97.1 0.0016 3.5E-08 54.7 6.9 57 24-92 10-66 (67)
216 PF00398 RrnaAD: Ribosomal RNA 97.1 0.0047 1E-07 66.7 12.1 113 699-833 16-133 (262)
217 TIGR02987 met_A_Alw26 type II 97.0 0.0035 7.6E-08 74.0 11.4 47 713-759 31-84 (524)
218 PF04672 Methyltransf_19: S-ad 96.9 0.0051 1.1E-07 67.5 10.3 130 697-838 48-196 (267)
219 PF02527 GidB: rRNA small subu 96.9 0.0038 8.2E-08 64.9 8.6 93 716-828 51-143 (184)
220 PF10672 Methyltrans_SAM: S-ad 96.8 0.025 5.3E-07 62.8 15.1 139 671-834 93-239 (286)
221 COG4627 Uncharacterized protei 96.8 0.00054 1.2E-08 69.8 2.0 103 778-894 31-134 (185)
222 COG4076 Predicted RNA methylas 96.8 0.0024 5.2E-08 67.0 6.4 112 701-830 20-132 (252)
223 TIGR00308 TRM1 tRNA(guanine-26 96.8 0.016 3.5E-07 66.3 13.6 99 715-831 46-146 (374)
224 KOG1663 O-methyltransferase [S 96.7 0.013 2.8E-07 63.1 11.6 117 699-831 59-181 (237)
225 PRK11760 putative 23S rRNA C24 96.7 0.018 4E-07 65.3 12.9 87 712-826 210-296 (357)
226 KOG0820 Ribosomal RNA adenine 96.7 0.0076 1.7E-07 66.3 9.4 79 706-800 51-129 (315)
227 PF03059 NAS: Nicotianamine sy 96.6 0.017 3.7E-07 63.8 11.7 108 713-831 120-229 (276)
228 COG2521 Predicted archaeal met 96.6 0.0056 1.2E-07 66.2 7.5 145 671-832 88-245 (287)
229 TIGR01444 fkbM_fam methyltrans 96.6 0.0054 1.2E-07 59.0 6.7 43 716-759 1-43 (143)
230 cd00048 DSRM Double-stranded R 96.5 0.0072 1.6E-07 50.6 6.5 37 56-92 32-68 (68)
231 PF11968 DUF3321: Putative met 96.5 0.019 4E-07 61.5 11.0 90 715-835 53-152 (219)
232 PF04816 DUF633: Family of unk 96.5 0.028 6.1E-07 59.5 12.2 104 717-836 1-104 (205)
233 KOG3191 Predicted N6-DNA-methy 96.4 0.012 2.7E-07 61.6 8.5 79 709-801 39-117 (209)
234 KOG3987 Uncharacterized conser 96.4 0.00098 2.1E-08 70.6 0.4 87 713-825 112-198 (288)
235 PF01728 FtsJ: FtsJ-like methy 96.3 0.0056 1.2E-07 61.8 5.1 37 713-749 23-59 (181)
236 KOG2352 Predicted spermine/spe 96.2 0.019 4E-07 67.4 9.3 103 715-832 50-162 (482)
237 COG0144 Sun tRNA and rRNA cyto 96.1 0.074 1.6E-06 60.5 13.6 119 704-834 147-290 (355)
238 PF03602 Cons_hypoth95: Conser 96.1 0.015 3.3E-07 60.2 7.4 123 697-834 24-155 (183)
239 COG3897 Predicted methyltransf 96.0 0.02 4.4E-07 60.6 8.0 107 712-838 78-185 (218)
240 COG0357 GidB Predicted S-adeno 96.0 0.024 5.2E-07 60.6 8.6 94 714-826 68-161 (215)
241 PF01189 Nol1_Nop2_Fmu: NOL1/N 95.9 0.039 8.4E-07 60.8 9.8 119 703-833 75-220 (283)
242 KOG2187 tRNA uracil-5-methyltr 95.9 0.013 2.7E-07 69.1 6.2 77 697-788 367-443 (534)
243 COG0742 N6-adenine-specific me 95.8 0.15 3.2E-06 53.7 13.1 126 696-834 24-156 (187)
244 PF01234 NNMT_PNMT_TEMT: NNMT/ 95.5 0.14 3.1E-06 56.1 12.2 114 713-830 56-197 (256)
245 COG2384 Predicted SAM-dependen 95.4 0.2 4.4E-06 53.9 12.6 118 699-834 4-121 (226)
246 TIGR00006 S-adenosyl-methyltra 95.4 0.046 9.9E-07 61.3 8.0 85 702-800 9-98 (305)
247 PRK12371 ribonuclease III; Rev 95.3 0.037 7.9E-07 59.7 6.9 69 15-95 160-232 (235)
248 KOG2915 tRNA(1-methyladenosine 95.3 0.11 2.4E-06 57.6 10.4 119 700-836 92-214 (314)
249 COG0293 FtsJ 23S rRNA methylas 95.3 0.18 3.8E-06 53.8 11.6 109 713-844 45-172 (205)
250 PHA03103 double-strand RNA-bin 95.3 0.037 8E-07 57.9 6.4 40 52-92 136-175 (183)
251 PHA02701 ORF020 dsRNA-binding 95.2 0.039 8.5E-07 57.6 6.2 69 15-95 107-178 (183)
252 PF07091 FmrO: Ribosomal RNA m 95.1 0.078 1.7E-06 57.9 8.5 107 713-835 105-211 (251)
253 COG4262 Predicted spermidine s 95.0 0.16 3.5E-06 58.2 10.9 160 651-830 214-405 (508)
254 PF03514 GRAS: GRAS domain fam 94.5 0.25 5.5E-06 56.7 11.2 126 703-838 100-249 (374)
255 PF00254 FKBP_C: FKBP-type pep 94.2 0.12 2.7E-06 46.8 6.4 91 580-678 4-94 (94)
256 PF05971 Methyltransf_10: Prot 94.1 0.27 5.9E-06 55.1 9.9 99 696-807 77-190 (299)
257 COG1189 Predicted rRNA methyla 94.0 0.33 7.1E-06 53.0 10.0 102 712-837 78-184 (245)
258 PRK10742 putative methyltransf 93.9 0.37 8E-06 52.8 10.2 108 688-804 55-174 (250)
259 KOG2730 Methylase [General fun 93.7 0.064 1.4E-06 57.9 3.9 74 713-800 94-171 (263)
260 PF01269 Fibrillarin: Fibrilla 93.6 0.35 7.7E-06 52.3 9.4 100 711-832 71-178 (229)
261 KOG4058 Uncharacterized conser 93.5 0.14 3.1E-06 52.4 5.9 94 695-801 54-147 (199)
262 KOG3115 Methyltransferase-like 93.2 0.35 7.5E-06 51.9 8.3 69 713-787 60-128 (249)
263 COG4301 Uncharacterized conser 93.0 0.86 1.9E-05 50.3 11.2 132 688-833 47-194 (321)
264 PRK00102 rnc ribonuclease III; 93.0 0.2 4.3E-06 52.8 6.4 68 14-93 156-227 (229)
265 PF14709 DND1_DSRM: double str 92.6 0.13 2.7E-06 47.0 3.7 40 54-93 31-80 (80)
266 TIGR02191 RNaseIII ribonucleas 92.3 0.27 5.9E-06 51.4 6.2 67 14-92 150-220 (220)
267 PF04989 CmcI: Cephalosporin h 92.3 0.38 8.2E-06 51.4 7.3 114 707-834 26-149 (206)
268 cd00048 DSRM Double-stranded R 92.2 0.18 3.8E-06 42.2 3.9 67 395-498 2-68 (68)
269 PF13578 Methyltransf_24: Meth 92.2 0.082 1.8E-06 48.8 2.0 98 718-830 1-102 (106)
270 cd08031 LARP_4_5_like La RNA-b 91.9 0.086 1.9E-06 47.9 1.7 73 108-202 2-74 (75)
271 KOG0544 FKBP-type peptidyl-pro 91.8 0.36 7.8E-06 46.0 5.6 70 571-641 7-76 (108)
272 cd08030 LA_like_plant La-motif 91.7 0.11 2.3E-06 48.9 2.1 86 108-203 3-90 (90)
273 COG0275 Predicted S-adenosylme 91.6 0.57 1.2E-05 52.7 7.9 85 703-800 13-102 (314)
274 smart00358 DSRM Double-strande 91.4 0.28 6.1E-06 41.2 4.2 66 395-498 1-66 (67)
275 PF03368 Dicer_dimer: Dicer di 91.2 0.34 7.3E-06 45.0 4.9 45 57-101 32-83 (90)
276 COG0571 Rnc dsRNA-specific rib 91.0 0.45 9.7E-06 51.7 6.2 71 14-96 163-233 (235)
277 KOG1709 Guanidinoacetate methy 90.7 1.7 3.6E-05 47.3 9.9 98 712-826 100-199 (271)
278 PF14709 DND1_DSRM: double str 90.4 0.51 1.1E-05 43.1 5.1 75 394-498 2-79 (80)
279 PF01795 Methyltransf_5: MraW 90.1 0.81 1.8E-05 51.7 7.5 85 702-800 9-99 (310)
280 smart00715 LA Domain in the RN 89.0 0.22 4.8E-06 45.8 1.7 79 105-204 2-80 (80)
281 TIGR00027 mthyl_TIGR00027 meth 89.0 19 0.00042 39.5 16.9 169 699-896 64-248 (260)
282 PRK12372 ribonuclease III; Rev 89.0 0.85 1.8E-05 53.2 6.7 66 17-94 152-222 (413)
283 KOG3201 Uncharacterized conser 88.7 0.67 1.5E-05 48.3 5.0 121 704-835 20-143 (201)
284 KOG2798 Putative trehalase [Ca 88.4 2.9 6.3E-05 47.6 10.1 155 713-896 150-335 (369)
285 TIGR03516 ppisom_GldI peptidyl 88.0 1.6 3.5E-05 45.5 7.4 107 561-680 65-175 (177)
286 COG5459 Predicted rRNA methyla 87.6 1.2 2.5E-05 51.3 6.4 112 711-834 111-227 (484)
287 PF02636 Methyltransf_28: Puta 87.1 1.9 4E-05 46.5 7.6 84 714-808 19-109 (252)
288 cd07323 LAM LA motif RNA-bindi 86.8 0.29 6.3E-06 44.4 1.1 74 108-203 2-75 (75)
289 PF07757 AdoMet_MTase: Predict 86.6 0.96 2.1E-05 44.2 4.5 31 713-746 58-88 (112)
290 PF06962 rRNA_methylase: Putat 86.2 4 8.7E-05 41.4 8.9 74 740-827 1-86 (140)
291 COG3510 CmcI Cephalosporin hyd 85.8 3.5 7.5E-05 44.2 8.4 110 706-834 62-182 (237)
292 KOG1562 Spermidine synthase [A 85.6 2.4 5.3E-05 47.9 7.6 111 712-832 120-235 (337)
293 cd00315 Cyt_C5_DNA_methylase C 85.3 1.7 3.7E-05 47.8 6.2 66 716-801 2-69 (275)
294 PF11599 AviRa: RRNA methyltra 85.2 1.2 2.5E-05 48.4 4.7 137 696-832 34-214 (246)
295 PF04445 SAM_MT: Putative SAM- 83.6 5.9 0.00013 43.3 9.3 109 692-806 45-163 (234)
296 PF06859 Bin3: Bicoid-interact 83.5 0.55 1.2E-05 45.8 1.3 105 794-917 1-110 (110)
297 cd08034 LARP_1_2 La RNA-bindin 83.4 0.5 1.1E-05 42.9 0.9 72 108-203 2-73 (73)
298 cd08029 LA_like_fungal La-moti 83.3 0.65 1.4E-05 42.4 1.7 75 108-203 2-76 (76)
299 KOG1122 tRNA and rRNA cytosine 83.1 4.1 8.9E-05 47.9 8.2 114 708-834 236-373 (460)
300 cd08033 LARP_6 La RNA-binding 82.3 0.57 1.2E-05 42.9 0.9 76 108-203 2-77 (77)
301 COG1889 NOP1 Fibrillarin-like 82.3 8.3 0.00018 41.8 9.5 102 712-832 75-180 (231)
302 PRK10737 FKBP-type peptidyl-pr 82.0 2 4.4E-05 45.7 4.9 60 582-648 4-66 (196)
303 KOG1501 Arginine N-methyltrans 81.7 2.7 5.8E-05 49.6 6.1 99 715-826 68-168 (636)
304 cd08038 LARP_2 La RNA-binding 81.0 0.81 1.8E-05 41.6 1.4 69 108-198 2-70 (73)
305 KOG2793 Putative N2,N2-dimethy 80.1 10 0.00022 41.9 9.6 114 713-835 86-202 (248)
306 KOG4589 Cell division protein 79.8 1.9 4.2E-05 46.0 3.9 34 713-746 69-102 (232)
307 COG3315 O-Methyltransferase in 79.7 14 0.00031 41.5 10.8 125 697-833 73-210 (297)
308 PF02254 TrkA_N: TrkA-N domain 78.6 4.7 0.0001 37.6 5.7 95 722-843 4-107 (116)
309 PHA01634 hypothetical protein 77.7 10 0.00022 38.6 7.9 46 712-759 27-72 (156)
310 PF00035 dsrm: Double-stranded 77.5 3.1 6.7E-05 35.1 3.8 67 395-498 1-67 (67)
311 KOG2651 rRNA adenine N-6-methy 77.4 5.7 0.00012 46.3 6.9 45 710-756 150-194 (476)
312 PF01861 DUF43: Protein of unk 77.2 16 0.00034 40.4 9.9 117 687-825 19-140 (243)
313 PF01555 N6_N4_Mtase: DNA meth 77.2 6.2 0.00013 40.2 6.6 54 699-756 178-231 (231)
314 cd08035 LARP_4 La RNA-binding 77.1 1.8 3.9E-05 39.7 2.4 70 108-199 2-71 (75)
315 PF02005 TRM: N2,N2-dimethylgu 77.0 6.8 0.00015 45.5 7.5 125 690-831 18-153 (377)
316 PRK11524 putative methyltransf 76.9 6 0.00013 43.6 6.8 45 712-759 207-251 (284)
317 PRK14718 ribonuclease III; Pro 76.8 4.9 0.00011 47.6 6.3 66 16-93 151-221 (467)
318 PF14954 LIX1: Limb expression 76.2 2.4 5.2E-05 45.8 3.3 41 50-91 52-94 (252)
319 cd08032 LARP_7 La RNA-binding 75.4 2.3 5.1E-05 39.5 2.7 81 103-203 2-82 (82)
320 COG4798 Predicted methyltransf 74.6 5.3 0.00011 43.0 5.3 116 709-833 44-167 (238)
321 PRK13699 putative methylase; P 73.5 9.2 0.0002 41.2 7.0 46 712-760 162-207 (227)
322 COG1867 TRM1 N2,N2-dimethylgua 71.3 17 0.00036 42.4 8.6 126 687-831 23-153 (380)
323 PRK15095 FKBP-type peptidyl-pr 71.3 7 0.00015 40.0 5.2 61 581-648 5-69 (156)
324 COG1064 AdhP Zn-dependent alco 69.8 16 0.00034 42.1 8.1 95 710-833 163-261 (339)
325 cd08028 LARP_3 La RNA-binding 69.6 3 6.4E-05 38.8 1.9 79 105-203 3-82 (82)
326 KOG2671 Putative RNA methylase 69.4 2.6 5.5E-05 48.5 1.7 85 707-800 202-290 (421)
327 TIGR00675 dcm DNA-methyltransf 69.3 13 0.00029 41.7 7.4 64 717-800 1-65 (315)
328 COG0286 HsdM Type I restrictio 69.1 11 0.00024 45.0 7.0 89 701-801 174-271 (489)
329 COG1063 Tdh Threonine dehydrog 68.8 39 0.00084 38.4 11.0 128 684-836 139-274 (350)
330 COG1255 Uncharacterized protei 68.6 21 0.00045 35.7 7.4 92 711-834 11-104 (129)
331 KOG3924 Putative protein methy 68.2 14 0.0003 43.4 7.3 118 704-831 183-306 (419)
332 KOG1596 Fibrillarin and relate 68.2 16 0.00034 40.7 7.2 102 710-833 153-262 (317)
333 PF03141 Methyltransf_29: Puta 65.9 17 0.00036 43.8 7.5 122 686-830 337-465 (506)
334 cd08283 FDH_like_1 Glutathione 65.9 40 0.00086 38.3 10.4 49 708-757 179-228 (386)
335 PF02737 3HCDH_N: 3-hydroxyacy 65.1 1.7E+02 0.0036 30.4 13.8 159 716-894 1-175 (180)
336 COG4017 Uncharacterized protei 64.4 28 0.0006 37.7 8.0 155 697-890 28-192 (254)
337 PRK09424 pntA NAD(P) transhydr 64.3 38 0.00083 41.0 10.2 43 712-756 163-206 (509)
338 TIGR00561 pntA NAD(P) transhyd 62.9 20 0.00044 43.3 7.6 111 713-830 163-281 (511)
339 cd08036 LARP_5 La RNA-binding 62.1 1.3 2.8E-05 40.6 -1.8 70 108-199 2-71 (75)
340 PF03269 DUF268: Caenorhabditi 62.1 5.7 0.00012 41.6 2.5 44 792-836 61-115 (177)
341 PF11312 DUF3115: Protein of u 58.8 16 0.00034 41.7 5.4 120 715-835 88-246 (315)
342 PF11899 DUF3419: Protein of u 58.7 13 0.00029 43.2 5.0 57 774-830 273-332 (380)
343 PRK07066 3-hydroxybutyryl-CoA 57.4 1.5E+02 0.0033 33.8 12.9 159 714-893 7-179 (321)
344 PF00145 DNA_methylase: C-5 cy 56.7 22 0.00049 38.4 6.1 64 716-800 2-67 (335)
345 cd08037 LARP_1 La RNA-binding 56.7 3 6.5E-05 38.1 -0.5 69 108-198 2-70 (73)
346 PF04072 LCM: Leucine carboxyl 56.6 84 0.0018 32.4 9.9 110 699-819 59-182 (183)
347 PRK07819 3-hydroxybutyryl-CoA 55.2 27 0.00059 38.7 6.5 106 715-831 6-119 (286)
348 PLN02668 indole-3-acetate carb 55.2 86 0.0019 36.9 10.7 95 714-808 64-176 (386)
349 PRK09880 L-idonate 5-dehydroge 54.6 74 0.0016 35.4 9.8 45 711-756 167-212 (343)
350 KOG2920 Predicted methyltransf 54.6 9.1 0.0002 43.0 2.6 39 712-752 115-153 (282)
351 COG1565 Uncharacterized conser 53.7 27 0.00058 40.7 6.2 80 713-808 77-163 (370)
352 COG1047 SlpA FKBP-type peptidy 53.0 23 0.00051 37.3 5.1 61 582-649 4-68 (174)
353 PLN02545 3-hydroxybutyryl-CoA 52.9 1.2E+02 0.0026 33.4 11.0 42 715-759 5-48 (295)
354 PRK01747 mnmC bifunctional tRN 52.9 56 0.0012 40.3 9.2 118 713-830 57-203 (662)
355 COG0569 TrkA K+ transport syst 52.3 1.2E+02 0.0026 32.7 10.6 105 715-844 1-112 (225)
356 PF07279 DUF1442: Protein of u 51.0 1.1E+02 0.0023 33.6 9.8 86 703-800 31-121 (218)
357 PRK05808 3-hydroxybutyryl-CoA 50.9 3.3E+02 0.0071 29.8 13.9 162 715-896 4-181 (282)
358 PRK10458 DNA cytosine methylas 50.8 67 0.0014 38.6 9.1 60 696-757 64-129 (467)
359 PRK07417 arogenate dehydrogena 49.6 1.1E+02 0.0024 33.6 9.9 85 716-830 2-88 (279)
360 cd08254 hydroxyacyl_CoA_DH 6-h 49.2 85 0.0018 34.0 9.0 44 711-756 163-207 (338)
361 TIGR00872 gnd_rel 6-phosphoglu 48.5 69 0.0015 35.6 8.3 92 716-835 2-95 (298)
362 KOG1855 Predicted RNA-binding 48.4 12 0.00027 44.0 2.5 94 102-215 136-229 (484)
363 PF03686 UPF0146: Uncharacteri 47.2 23 0.0005 35.6 3.9 94 711-836 11-106 (127)
364 PF06690 DUF1188: Protein of u 45.9 1.9E+02 0.0042 32.2 10.8 107 697-838 25-132 (252)
365 PRK09496 trkA potassium transp 45.6 3.2E+02 0.0069 31.6 13.4 105 713-842 230-340 (453)
366 PF03492 Methyltransf_7: SAM d 43.5 94 0.002 35.6 8.5 90 713-808 16-121 (334)
367 KOG0822 Protein kinase inhibit 43.4 60 0.0013 39.8 7.1 104 714-830 368-475 (649)
368 PRK03659 glutathione-regulated 43.0 93 0.002 38.3 8.9 101 715-842 401-508 (601)
369 cd08230 glucose_DH Glucose deh 42.5 1.5E+02 0.0032 33.2 9.8 43 712-756 171-217 (355)
370 PRK03562 glutathione-regulated 42.1 1.2E+02 0.0025 37.7 9.6 97 714-837 400-503 (621)
371 COG1568 Predicted methyltransf 41.4 16 0.00035 41.3 2.0 99 685-800 125-227 (354)
372 PRK08293 3-hydroxybutyryl-CoA 39.7 3.4E+02 0.0074 29.9 11.9 42 715-759 4-47 (287)
373 PRK10902 FKBP-type peptidyl-pr 38.9 85 0.0018 35.1 7.1 99 575-685 155-253 (269)
374 KOG2198 tRNA cytosine-5-methyl 38.3 2.1E+02 0.0046 33.7 10.3 112 710-834 152-298 (375)
375 PRK11570 peptidyl-prolyl cis-t 37.4 54 0.0012 35.1 5.1 64 578-650 114-181 (206)
376 PRK11154 fadJ multifunctional 36.9 2.4E+02 0.0052 35.6 11.3 162 714-895 309-487 (708)
377 COG3129 Predicted SAM-dependen 36.3 73 0.0016 35.6 5.8 99 696-807 52-166 (292)
378 cd08232 idonate-5-DH L-idonate 36.0 1.2E+02 0.0027 33.1 7.8 46 710-756 162-208 (339)
379 PRK06035 3-hydroxyacyl-CoA deh 35.7 1.6E+02 0.0034 32.5 8.5 42 715-759 4-47 (291)
380 TIGR00518 alaDH alanine dehydr 34.0 82 0.0018 36.5 6.2 42 713-756 166-208 (370)
381 PRK10669 putative cation:proto 32.9 2.1E+02 0.0046 34.7 9.7 92 715-834 418-517 (558)
382 COG5379 BtaA S-adenosylmethion 32.7 90 0.002 35.9 6.0 59 775-833 306-367 (414)
383 COG0287 TyrA Prephenate dehydr 32.6 1E+02 0.0022 34.5 6.5 92 715-832 4-97 (279)
384 cd01080 NAD_bind_m-THF_DH_Cycl 31.6 1.6E+02 0.0035 30.6 7.3 55 691-748 21-78 (168)
385 PRK11730 fadB multifunctional 31.4 3.3E+02 0.0072 34.5 11.3 106 715-831 314-426 (715)
386 COG5379 BtaA S-adenosylmethion 31.0 1.2E+02 0.0026 34.9 6.6 72 686-760 33-107 (414)
387 PRK09496 trkA potassium transp 30.3 3.6E+02 0.0079 31.2 10.7 91 716-834 2-101 (453)
388 PF05050 Methyltransf_21: Meth 30.2 68 0.0015 31.0 4.2 38 719-757 1-42 (167)
389 KOG2539 Mitochondrial/chloropl 30.0 1.8E+02 0.004 35.2 8.2 110 712-831 199-314 (491)
390 PF11899 DUF3419: Protein of u 29.9 1.3E+02 0.0027 35.4 6.8 47 706-755 28-74 (380)
391 TIGR02441 fa_ox_alpha_mit fatt 29.7 6.3E+02 0.014 32.3 13.3 162 715-896 336-513 (737)
392 COG0270 Dcm Site-specific DNA 29.5 1.1E+02 0.0023 34.8 6.1 69 714-801 3-74 (328)
393 COG0686 Ald Alanine dehydrogen 29.3 1.8E+02 0.004 33.8 7.7 100 713-832 167-267 (371)
394 PRK07530 3-hydroxybutyryl-CoA 29.1 5.9E+02 0.013 28.0 11.6 42 715-759 5-48 (292)
395 KOG1099 SAM-dependent methyltr 28.3 83 0.0018 35.1 4.7 95 713-830 41-160 (294)
396 PRK09260 3-hydroxybutyryl-CoA 28.0 8.4E+02 0.018 26.8 13.4 42 715-759 2-45 (288)
397 COG2933 Predicted SAM-dependen 27.6 1.8E+02 0.004 33.1 7.2 87 712-826 210-296 (358)
398 PRK12921 2-dehydropantoate 2-r 27.2 3.1E+02 0.0068 29.9 9.0 35 716-754 2-38 (305)
399 cd01065 NAD_bind_Shikimate_DH 27.2 2.5E+02 0.0054 27.3 7.5 44 712-757 17-62 (155)
400 PF12242 Eno-Rase_NADH_b: NAD( 27.1 95 0.0021 29.1 4.2 49 700-748 25-74 (78)
401 TIGR02437 FadB fatty oxidation 26.7 4.6E+02 0.01 33.3 11.4 107 714-831 313-426 (714)
402 PF09263 PEX-2N: Peroxisome bi 26.4 42 0.00091 31.7 1.8 17 256-272 66-82 (87)
403 TIGR00497 hsdM type I restrict 26.0 6E+02 0.013 30.6 11.8 55 704-758 206-265 (501)
404 PRK07502 cyclohexadienyl dehyd 25.7 2.8E+02 0.006 30.9 8.4 40 715-755 7-48 (307)
405 KOG1098 Putative SAM-dependent 25.4 79 0.0017 39.4 4.3 36 713-748 44-79 (780)
406 PF02153 PDH: Prephenate dehyd 25.3 1.1E+02 0.0024 33.3 5.1 78 727-832 1-78 (258)
407 PRK12480 D-lactate dehydrogena 25.0 2.5E+02 0.0053 32.2 8.0 87 712-833 144-234 (330)
408 PF10354 DUF2431: Domain of un 24.2 4E+02 0.0086 27.7 8.6 101 720-834 3-127 (166)
409 PRK08217 fabG 3-ketoacyl-(acyl 24.0 2.6E+02 0.0057 28.8 7.4 75 713-803 4-91 (253)
410 TIGR02356 adenyl_thiF thiazole 23.1 2.1E+02 0.0045 30.2 6.5 35 711-747 18-54 (202)
411 PF05206 TRM13: Methyltransfer 23.0 84 0.0018 35.0 3.7 36 713-748 18-57 (259)
412 PRK08306 dipicolinate synthase 22.8 2.7E+02 0.0059 31.3 7.6 86 713-830 151-238 (296)
413 PLN02256 arogenate dehydrogena 22.7 4.5E+02 0.0098 29.7 9.4 38 708-748 30-69 (304)
414 KOG0552 FKBP-type peptidyl-pro 22.6 1.5E+02 0.0033 32.6 5.5 109 561-680 116-225 (226)
415 TIGR02279 PaaC-3OHAcCoADH 3-hy 22.5 1.8E+02 0.0038 35.3 6.5 107 713-830 4-117 (503)
416 PRK08507 prephenate dehydrogen 22.5 3.4E+02 0.0074 29.6 8.2 39 716-755 2-42 (275)
417 TIGR02440 FadJ fatty oxidation 22.5 5.4E+02 0.012 32.6 10.8 162 715-896 305-483 (699)
418 PRK08268 3-hydroxy-acyl-CoA de 22.4 1.9E+02 0.004 35.1 6.7 106 713-829 6-118 (507)
419 PRK06130 3-hydroxybutyryl-CoA 21.9 4.3E+02 0.0092 29.3 8.9 41 715-758 5-47 (311)
420 PRK06522 2-dehydropantoate 2-r 21.4 4.1E+02 0.0088 28.9 8.5 37 716-755 2-40 (304)
421 PTZ00357 methyltransferase; Pr 21.3 2.4E+02 0.0053 36.0 7.2 100 716-825 703-823 (1072)
422 PRK08703 short chain dehydroge 20.9 4.1E+02 0.0088 27.6 8.1 43 713-758 5-50 (239)
423 KOG2777 tRNA-specific adenosin 20.7 1.9E+02 0.0042 35.5 6.3 76 51-129 113-196 (542)
424 PRK05854 short chain dehydroge 20.5 4.4E+02 0.0096 29.2 8.7 79 712-804 12-103 (313)
No 1
>KOG1045 consensus Uncharacterized conserved protein HEN1/CORYMBOSA2 [Function unknown]
Probab=100.00 E-value=7.9e-42 Score=374.28 Aligned_cols=382 Identities=28% Similarity=0.321 Sum_probs=322.4
Q ss_pred cceEEeeecCccccccccCC--CCCccccccccCCCCCccccccccccccceeeeeccceeecCCccccccchhhhhhhh
Q 002218 282 SEMRLYFAAPKSYLLDLSSD--LPNVEEVVDFEGSLNPRASYLYGQDIYGDAILASIGYTRKSEGLFHEDITLQSYYRML 359 (952)
Q Consensus 282 ~e~r~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~n~ras~~~~~~i~g~ai~a~~g~~~~~~~l~~~~~~~~~~~r~~ 359 (952)
.|| |...|+ +.+.. +.....-.|+..++ +||+|.|||+|+||+|+|+|||+||
T Consensus 6 ~~c--~~~~~~----n~~e~~~~~~~~~~~~l~~~r-~r~~fk~~qd~~~~~~~a~~g~~w~------------------ 60 (404)
T KOG1045|consen 6 DEC--YSDIPK----NSLEAALLTPIDFSPPLAKQR-ARASFKNLQDIHGDKILADVGCGWR------------------ 60 (404)
T ss_pred CcC--cccCCc----chhhhccccccccccHHHHHh-hhhhhhcccCCCcchhhhhcCCccc------------------
Confidence 367 888888 22222 23344447888899 9999999999999999999999996
Q ss_pred hccCCCcccccchhhhhhhcCCcceeeccccCCCChhhHHHhhhhhcccCcceeccccCCccccccchhhhhhhhhcccc
Q 002218 360 IHLTPSGVYKLSREAILTAELPMAFTTRTNWRGSFPREMLFMFCRQHWLSEPVFSTCSNSLKESSESSRFYEKSAALESA 439 (952)
Q Consensus 360 ~~~~p~g~yk~sr~~~~~a~lp~~~t~~~~w~g~~pr~~l~~fc~~~~l~ep~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 439 (952)
|.+|+|+||.||++++.|.||..+| +.+|||++||.+||+||||++|.+|++....++++.++++.|+.+++++....
T Consensus 61 -~~s~n~~~k~s~~~~~~agl~f~~~-k~~~r~~~~~~~l~dF~r~r~l~l~I~~~~G~~v~s~s~i~~~d~v~~~e~ie 138 (404)
T KOG1045|consen 61 -GSSYNGIYKESRTIEILAGLDFNET-KSVWRGPSVRPILGDFLRSRQLPLPILLLSGNVVDSLSKILRSDAVLAIELIE 138 (404)
T ss_pred -ccccccccccchhhHHHcCCCchhh-hhhhcCcchhHHHHHHhhhhcCCcceeeecCCccccHHHHHhhhhhhhhhhhh
Confidence 9999999999999999999999998 99999999999999999999999999999999999999999999999776544
Q ss_pred cccccccCCCcccCCCc---eeEEEEEeeccCCcccccCchhhhhhhhhhHhhhhhHHHHHHHhhhCCCCCCcccccccc
Q 002218 440 ETGKECTSGGGTAASDN---VRCEVKIFSKSRDPILECSPKEFYKKQNESIENASLKVLSWLNAYFKDPDIPLEKLNNLV 516 (952)
Q Consensus 440 ~~~~~~~~~~~~~~~~~---f~c~v~~~s~~~~~~~~~~~~~~~~~~~dai~~a~l~~l~~~~~~~~~~~~~~~~~~~~~ 516 (952)
..+++. ...-.++ |+|+++|..+.+++.++|++.+||.+.++||||++++++.|..+-|++ +.+..+
T Consensus 139 h~ds~~----~~~ip~~vfG~~~p~~iv~stpn~~~N~~~~kf~~l~p~~~~~~s~h~feW~r~eFa~------w~~~vd 208 (404)
T KOG1045|consen 139 HVDSEP----LLSIPELVFGFLCPVKIVKSTPNLVFNCIFRKFNTLLPSAIRRHSDHKFEWPRKEFAD------WALYVD 208 (404)
T ss_pred cccchh----hhccchhhcccccceEEEEeCCCccccchhhhhcccCchhhhccccccccccHHHHHH------HHhhhh
Confidence 444221 1111222 999999999999999999999999999999999999999999999999 666666
Q ss_pred CcCCeeeccchhhhhcccccchhccccccccccccccccccccccCCCCceeeeccCCCCCCccCCCCceeEEEEEEEEe
Q 002218 517 GALDIQCYPQNFFKKFSSYRFIHNVQQRKMGEKLLQANSINTLNAIPEHGIYCLSIGGPDSGIYPSNGCLSFISYSVSLV 596 (952)
Q Consensus 517 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~gs~~~i~y~~~l~ 596 (952)
+..|......+-.-.....+. +. .+..+++++.| +||+.+-|+|+..+.
T Consensus 209 ~~y~~~~~~~~~vg~pp~~~e-------------------~v---~~~~qirIfs~---------t~g~~~qi~~~~~~~ 257 (404)
T KOG1045|consen 209 DRYDMYVVEHTGVGNPPKLVE-------------------NV---GLMPQIRIFSI---------TNGSYTQICYSEQSK 257 (404)
T ss_pred hcCcceEEeecccCCchhhhc-------------------cc---cccceeEEEEe---------cCCcEEEEeeccccc
Confidence 666655444332222211111 11 15677888888 999999999999998
Q ss_pred ec-ccc--hhhhhccccceEEEeccCccchhhhhhhhhccccccceecccCC-chhhhhhhccCcccchhcccccccccc
Q 002218 597 IE-GET--MKELLESREEFEFEMGTGAVIPQVEVVTAQMSVGQSACFCKELP-PQELILAAADDSARTFSLLSSRACCLE 672 (952)
Q Consensus 597 ~~-~~~--~~~~~e~~~~~~fe~g~~a~~~~l~~v~~q~sv~q~~~~~~~l~-~~~l~lAa~~~~~~DiSlLs~d~~~LE 672 (952)
+. ++| .+-..||+++++|++|.+.+..+++..|+||++|+-++|-+..+ +.++++.+......+.+.|..-.+ ++
T Consensus 258 ~~~~~~~f~~s~~es~e~~e~~v~~~~~~q~~~~~v~q~~~g~k~~f~~s~~~~~~l~~~~~~~~~~~~s~l~~v~~-~~ 336 (404)
T KOG1045|consen 258 VNADKHKFGKSRKESNEEIEKLVGRFEMNQHLEPEVQQMLVGYKAQFGASQPAAERLQVTLNTPTPCELSVLEEVGH-LK 336 (404)
T ss_pred CCcchhccccCchHHhhhhhhhhccccccccccHHHHHHHHHHHHHhhcCcccccceeeeccCCcccccchhhhhcc-ch
Confidence 77 333 33455699999999999999999999999999999999999999 677799999999999998888888 99
Q ss_pred eeeeecccCCChhhhhhhhcCCchhHHHHHHHHHHHhhcCCCCEEEEEcCccchHHHHHh
Q 002218 673 YHITLLRVTEPPEDRMEQALFSPPLSKQRVEYALQHIKESCATTLVDFGCGSGSLLDSLL 732 (952)
Q Consensus 673 yyI~LL~v~ep~EeRye~~~F~PPL~~QR~efVldlL~~~k~krVLDIGCGeG~ll~~LA 732 (952)
+.+.++.+.-+.+++++..++.|....+|..+...+.......++|+-|||.|.......
T Consensus 337 ~~i~ll~~~~~~~~~~el~~~~~~~~~~~~~~~~k~s~~ssa~~~l~~~~~s~v~~d~~~ 396 (404)
T KOG1045|consen 337 ERIGLLLVAGNLEKEIELDFLKPSLKKQRLEYALKHSRSSSADTLLLFSCGSGVLFDLTL 396 (404)
T ss_pred hccccceeccCcceeeehhhccchhhhhchhhHhhhhHHhhhhhhhhhccccceehhhcc
Confidence 999999999999999999999999999999999999888888999999999998875443
No 2
>COG2227 UbiG 2-polyprenyl-3-methyl-5-hydroxy-6-metoxy-1,4-benzoquinol methylase [Coenzyme metabolism]
Probab=99.73 E-value=7.9e-18 Score=177.53 Aligned_cols=176 Identities=22% Similarity=0.302 Sum_probs=139.4
Q ss_pred hHHHHHHHHHHHhhc---CCCCEEEEEcCccchHHHHHhcCCCCCceEEEEeCChHHHHHHHHHHhhhhhcccccCCCCC
Q 002218 697 LSKQRVEYALQHIKE---SCATTLVDFGCGSGSLLDSLLDYPTALEKIVGVDISQKSLSRAAKIIHSKLSKKLDAAVPCT 773 (952)
Q Consensus 697 L~~QR~efVldlL~~---~k~krVLDIGCGeG~ll~~LAr~g~~~~qVVGVDISeemLe~ArkrLsa~la~~~~~l~Pr~ 773 (952)
+.+-|..++.+.+.. ..+.+|||||||-|.++..||+.| ++|+|+|+++++|+.|+.... .
T Consensus 40 ~N~~rl~~i~~~~~~~~~l~g~~vLDvGCGgG~Lse~mAr~G---a~VtgiD~se~~I~~Ak~ha~-------------e 103 (243)
T COG2227 40 INPLRLDYIREVARLRFDLPGLRVLDVGCGGGILSEPLARLG---ASVTGIDASEKPIEVAKLHAL-------------E 103 (243)
T ss_pred eccchhhhhhhhhhcccCCCCCeEEEecCCccHhhHHHHHCC---CeeEEecCChHHHHHHHHhhh-------------h
Confidence 345677888777764 578999999999999999999999 899999999999999976432 1
Q ss_pred CCccEEEEEcCccccCCCCCCccEEEEccccccCChhHHHHHHHHHHHccCCC-EEEEEecCCchhHHHHhhccCccCCC
Q 002218 774 DVKSAVLFDGSITVFDSRLHGFDIGTCLEVIEHMEEDEASQFGNIVLSSFRPR-ILIVSTPNYEYNAILQKSSSTIQEDD 852 (952)
Q Consensus 774 ~~~nVtf~qGDa~dLpf~d~sFDVVVcieVIEHL~dD~l~~L~eeI~RvLKPG-~LIISTPN~efN~lf~~L~~~ta~eY 852 (952)
...++++.+..++++....++||+|+|.+||||+++++ .|...+.+++||| .++++|+|..+.+++..+.+ + +|
T Consensus 104 ~gv~i~y~~~~~edl~~~~~~FDvV~cmEVlEHv~dp~--~~~~~c~~lvkP~G~lf~STinrt~ka~~~~i~~--a-e~ 178 (243)
T COG2227 104 SGVNIDYRQATVEDLASAGGQFDVVTCMEVLEHVPDPE--SFLRACAKLVKPGGILFLSTINRTLKAYLLAIIG--A-EY 178 (243)
T ss_pred ccccccchhhhHHHHHhcCCCccEEEEhhHHHccCCHH--HHHHHHHHHcCCCcEEEEeccccCHHHHHHHHHH--H-HH
Confidence 23368899999999887778999999999999999544 3566899999999 99999999998887765543 1 22
Q ss_pred CcchhhhccccccCCCCccccCHHHHHHHHHHHHHHcCcEE-EEEeecCCC
Q 002218 853 PDEKTQLQSCKFRNHDHKFEWTRDQFNCWATELAARHNYSV-EFSGVGGSG 902 (952)
Q Consensus 853 Pde~~g~~~~~fRh~DHkFEWTReEFqsWae~La~q~GYsV-efsGVG~~p 902 (952)
. ..+.+...++...+..++|+..|+.+ .|+.+ ...|+..-|
T Consensus 179 ----v-l~~vP~gTH~~~k~irp~El~~~~~~----~~~~~~~~~g~~y~p 220 (243)
T COG2227 179 ----V-LRIVPKGTHDYRKFIKPAELIRWLLG----ANLKIIDRKGLTYNP 220 (243)
T ss_pred ----H-HHhcCCcchhHHHhcCHHHHHHhccc----CCceEEeecceEecc
Confidence 1 24777888888888999999988654 34444 566666543
No 3
>PLN02396 hexaprenyldihydroxybenzoate methyltransferase
Probab=99.71 E-value=2.1e-16 Score=174.14 Aligned_cols=176 Identities=19% Similarity=0.213 Sum_probs=128.8
Q ss_pred HHHHHHHHHHhh-----------cCCCCEEEEEcCccchHHHHHhcCCCCCceEEEEeCChHHHHHHHHHHhhhhhcccc
Q 002218 699 KQRVEYALQHIK-----------ESCATTLVDFGCGSGSLLDSLLDYPTALEKIVGVDISQKSLSRAAKIIHSKLSKKLD 767 (952)
Q Consensus 699 ~QR~efVldlL~-----------~~k~krVLDIGCGeG~ll~~LAr~g~~~~qVVGVDISeemLe~ArkrLsa~la~~~~ 767 (952)
..|+.++.+.+. ..++.+|||||||+|.++..|++.+ .+|+|||+++++++.|+++....
T Consensus 106 ~~R~~~i~~~l~~~~~~~~~~~~~~~g~~ILDIGCG~G~~s~~La~~g---~~V~GID~s~~~i~~Ar~~~~~~------ 176 (322)
T PLN02396 106 PTRLAFIRSTLCRHFSKDPSSAKPFEGLKFIDIGCGGGLLSEPLARMG---ATVTGVDAVDKNVKIARLHADMD------ 176 (322)
T ss_pred hHHHHHHHHHHHHHhccchhhccCCCCCEEEEeeCCCCHHHHHHHHcC---CEEEEEeCCHHHHHHHHHHHHhc------
Confidence 457777655431 1245699999999999999999876 79999999999999998654210
Q ss_pred cCCCCCCCccEEEEEcCccccCCCCCCccEEEEccccccCChhHHHHHHHHHHHccCCC-EEEEEecCCchhHHHHhhcc
Q 002218 768 AAVPCTDVKSAVLFDGSITVFDSRLHGFDIGTCLEVIEHMEEDEASQFGNIVLSSFRPR-ILIVSTPNYEYNAILQKSSS 846 (952)
Q Consensus 768 ~l~Pr~~~~nVtf~qGDa~dLpf~d~sFDVVVcieVIEHL~dD~l~~L~eeI~RvLKPG-~LIISTPN~efN~lf~~L~~ 846 (952)
....++++.++|++++++.++.||+|+|.+||||+.+.. .+.+++.++|||| .++++++|.....++..+..
T Consensus 177 -----~~~~~i~~~~~dae~l~~~~~~FD~Vi~~~vLeHv~d~~--~~L~~l~r~LkPGG~liist~nr~~~~~~~~i~~ 249 (322)
T PLN02396 177 -----PVTSTIEYLCTTAEKLADEGRKFDAVLSLEVIEHVANPA--EFCKSLSALTIPNGATVLSTINRTMRAYASTIVG 249 (322)
T ss_pred -----CcccceeEEecCHHHhhhccCCCCEEEEhhHHHhcCCHH--HHHHHHHHHcCCCcEEEEEECCcCHHHHHHhhhh
Confidence 112379999999999988788999999999999999443 4556799999999 99999999876554432211
Q ss_pred CccCCCCcchhhhccccccCCCCccccCHHHHHHHHHHHHHHcCcEE-EEEeecCCC
Q 002218 847 TIQEDDPDEKTQLQSCKFRNHDHKFEWTRDQFNCWATELAARHNYSV-EFSGVGGSG 902 (952)
Q Consensus 847 ~ta~eYPde~~g~~~~~fRh~DHkFEWTReEFqsWae~La~q~GYsV-efsGVG~~p 902 (952)
.+|. ..+.+...+.+..+++++++. .+++++||.+ +..|+...|
T Consensus 250 ---~eyi-----~~~lp~gth~~~~f~tp~eL~----~lL~~aGf~i~~~~G~~~~p 294 (322)
T PLN02396 250 ---AEYI-----LRWLPKGTHQWSSFVTPEELS----MILQRASVDVKEMAGFVYNP 294 (322)
T ss_pred ---HHHH-----HhcCCCCCcCccCCCCHHHHH----HHHHHcCCeEEEEeeeEEcC
Confidence 0111 123333333444568999999 5677889988 567777654
No 4
>KOG1045 consensus Uncharacterized conserved protein HEN1/CORYMBOSA2 [Function unknown]
Probab=99.65 E-value=4.7e-17 Score=180.11 Aligned_cols=242 Identities=24% Similarity=0.335 Sum_probs=186.9
Q ss_pred hhhhhhcCCchhHHHH-HHHHHHHhhcCCCCEEEEEcCccch--HHHHHhcCCCCCceEEEEeCChHHHHHHHHHHhhhh
Q 002218 686 DRMEQALFSPPLSKQR-VEYALQHIKESCATTLVDFGCGSGS--LLDSLLDYPTALEKIVGVDISQKSLSRAAKIIHSKL 762 (952)
Q Consensus 686 eRye~~~F~PPL~~QR-~efVldlL~~~k~krVLDIGCGeG~--ll~~LAr~g~~~~qVVGVDISeemLe~ArkrLsa~l 762 (952)
.+++..-|+||++.+| +..........+++.+.|+|||+-. +...+.... +.....|+|+++..+.+....++..+
T Consensus 20 ~~~~~~~~~~~l~~~r~r~~fk~~qd~~~~~~~a~~g~~w~~~s~n~~~k~s~-~~~~~agl~f~~~k~~~r~~~~~~~l 98 (404)
T KOG1045|consen 20 ALLTPIDFSPPLAKQRARASFKNLQDIHGDKILADVGCGWRGSSYNGIYKESR-TIEILAGLDFNETKSVWRGPSVRPIL 98 (404)
T ss_pred ccccccccccHHHHHhhhhhhhcccCCCcchhhhhcCCcccccccccccccch-hhHHHcCCCchhhhhhhcCcchhHHH
Confidence 4467788999999999 4445555566788899999999842 222222221 33567899999986655543333332
Q ss_pred hcccccCCCCCCCccEEEEEcCccccCCCCCCccEEEEccccccCChhHHHHHHHHHHHccCCCEEEEEecCCchhHHHH
Q 002218 763 SKKLDAAVPCTDVKSAVLFDGSITVFDSRLHGFDIGTCLEVIEHMEEDEASQFGNIVLSSFRPRILIVSTPNYEYNAILQ 842 (952)
Q Consensus 763 a~~~~~l~Pr~~~~nVtf~qGDa~dLpf~d~sFDVVVcieVIEHL~dD~l~~L~eeI~RvLKPG~LIISTPN~efN~lf~ 842 (952)
. +...+|..+..|..+.|++.+.......+|.+++++.|+|+..++...+.+.+++.+.|..++++|||.+||..+.
T Consensus 99 ~---dF~r~r~l~l~I~~~~G~~v~s~s~i~~~d~v~~~e~ieh~ds~~~~~ip~~vfG~~~p~~iv~stpn~~~N~~~~ 175 (404)
T KOG1045|consen 99 G---DFLRSRQLPLPILLLSGNVVDSLSKILRSDAVLAIELIEHVDSEPLLSIPELVFGFLCPVKIVKSTPNLVFNCIFR 175 (404)
T ss_pred H---HHhhhhcCCcceeeecCCccccHHHHHhhhhhhhhhhhhcccchhhhccchhhcccccceEEEEeCCCccccchhh
Confidence 2 2344567778999999999887666778999999999999999999999999999999999999999999999888
Q ss_pred hhccCccCCCCcchhhhccccccCCCCccccCHHHHHHHHHHHHHHcC-cEEEEEeecCCCCC--CCCccceeeeeecCC
Q 002218 843 KSSSTIQEDDPDEKTQLQSCKFRNHDHKFEWTRDQFNCWATELAARHN-YSVEFSGVGGSGDR--EPGFASQIAVFRSRT 919 (952)
Q Consensus 843 ~L~~~ta~eYPde~~g~~~~~fRh~DHkFEWTReEFqsWae~La~q~G-YsVefsGVG~~p~g--e~G~aTQIAVFrRk~ 919 (952)
+++. .. ...-.||.+|+|+|++.+|.+|+-.+.++|. |.+++.|+|.+|.. +.|+.+||.||++..
T Consensus 176 kf~~----l~-------p~~~~~~s~h~feW~r~eFa~w~~~vd~~y~~~~~~~~~vg~pp~~~e~v~~~~qirIfs~t~ 244 (404)
T KOG1045|consen 176 KFNT----LL-------PSAIRRHSDHKFEWPRKEFADWALYVDDRYDMYVVEHTGVGNPPKLVENVGLMPQIRIFSITN 244 (404)
T ss_pred hhcc----cC-------chhhhccccccccccHHHHHHHHhhhhhcCcceEEeecccCCchhhhccccccceeEEEEecC
Confidence 7643 11 1223449999999999999999999999995 66678899998865 678899999999999
Q ss_pred CCCCcccccCCCCccceeEEEEe
Q 002218 920 PPEEDDLLKDGDSAHHYKVIWEW 942 (952)
Q Consensus 920 ~~~~~~~~~~~~~~~~Yk~v~~w 942 (952)
+..+.....++..-++++.....
T Consensus 245 g~~~qi~~~~~~~~~~~~~~f~~ 267 (404)
T KOG1045|consen 245 GSYTQICYSEQSKVNADKHKFGK 267 (404)
T ss_pred CcEEEEeecccccCCcchhcccc
Confidence 99988877777766777755443
No 5
>PRK11036 putative S-adenosyl-L-methionine-dependent methyltransferase; Provisional
Probab=99.60 E-value=3.3e-14 Score=150.25 Aligned_cols=189 Identities=14% Similarity=0.185 Sum_probs=123.2
Q ss_pred hhhhhhcCCchhHHHHHHH-------HHHHhhcCCCCEEEEEcCccchHHHHHhcCCCCCceEEEEeCChHHHHHHHHHH
Q 002218 686 DRMEQALFSPPLSKQRVEY-------ALQHIKESCATTLVDFGCGSGSLLDSLLDYPTALEKIVGVDISQKSLSRAAKII 758 (952)
Q Consensus 686 eRye~~~F~PPL~~QR~ef-------VldlL~~~k~krVLDIGCGeG~ll~~LAr~g~~~~qVVGVDISeemLe~ArkrL 758 (952)
++|....|.-+-..-|... +++.+. .++.+|||+|||+|.++..|++.+ .+|+|+|+|++|++.|+++.
T Consensus 11 ~~f~~~~y~~~~g~~r~~~~~~~~~~~l~~l~-~~~~~vLDiGcG~G~~a~~la~~g---~~v~~vD~s~~~l~~a~~~~ 86 (255)
T PRK11036 11 EKFSRNIYGTTKGQIRQAILWQDLDRLLAELP-PRPLRVLDAGGGEGQTAIKLAELG---HQVILCDLSAEMIQRAKQAA 86 (255)
T ss_pred HHHHHhccCCCccHHHHHHHHHHHHHHHHhcC-CCCCEEEEeCCCchHHHHHHHHcC---CEEEEEECCHHHHHHHHHHH
Confidence 4555544444444434333 233332 356799999999999999999987 79999999999999998876
Q ss_pred hhhhhcccccCCCCCCCccEEEEEcCccccC-CCCCCccEEEEccccccCChhHHHHHHHHHHHccCCC-EEEEEecCCc
Q 002218 759 HSKLSKKLDAAVPCTDVKSAVLFDGSITVFD-SRLHGFDIGTCLEVIEHMEEDEASQFGNIVLSSFRPR-ILIVSTPNYE 836 (952)
Q Consensus 759 sa~la~~~~~l~Pr~~~~nVtf~qGDa~dLp-f~d~sFDVVVcieVIEHL~dD~l~~L~eeI~RvLKPG-~LIISTPN~e 836 (952)
... ....+++++++|+.+++ +..+.||+|+|..+++|+.+ +...+ +++.++|||| .+++..+|.+
T Consensus 87 ~~~-----------g~~~~v~~~~~d~~~l~~~~~~~fD~V~~~~vl~~~~~-~~~~l-~~~~~~LkpgG~l~i~~~n~~ 153 (255)
T PRK11036 87 EAK-----------GVSDNMQFIHCAAQDIAQHLETPVDLILFHAVLEWVAD-PKSVL-QTLWSVLRPGGALSLMFYNAN 153 (255)
T ss_pred Hhc-----------CCccceEEEEcCHHHHhhhcCCCCCEEEehhHHHhhCC-HHHHH-HHHHHHcCCCeEEEEEEECcc
Confidence 421 12347899999998874 45678999999999999984 43444 5799999999 7777878765
Q ss_pred hhHHHHhhccCccCCCCcchhhhccccccCCCCccccCHHHHHHHHHHHHHHcCcEEE-EEeec
Q 002218 837 YNAILQKSSSTIQEDDPDEKTQLQSCKFRNHDHKFEWTRDQFNCWATELAARHNYSVE-FSGVG 899 (952)
Q Consensus 837 fN~lf~~L~~~ta~eYPde~~g~~~~~fRh~DHkFEWTReEFqsWae~La~q~GYsVe-fsGVG 899 (952)
...+-..+.+ .+.....+......+.....+.++++++.+| +++.||.+. ..|+.
T Consensus 154 ~~~~~~~~~~----~~~~~~~~~~~~~~~~~~p~~~~~~~~l~~~----l~~aGf~~~~~~gi~ 209 (255)
T PRK11036 154 GLLMHNMVAG----NFDYVQAGMPKRKKRTLSPDYPLDPEQVYQW----LEEAGWQIMGKTGVR 209 (255)
T ss_pred HHHHHHHHcc----ChHHHHhcCccccccCCCCCCCCCHHHHHHH----HHHCCCeEeeeeeEE
Confidence 3322111111 1100000000000111122345799999966 567799885 66665
No 6
>COG2226 UbiE Methylase involved in ubiquinone/menaquinone biosynthesis [Coenzyme metabolism]
Probab=99.60 E-value=8.8e-15 Score=155.39 Aligned_cols=120 Identities=18% Similarity=0.239 Sum_probs=98.7
Q ss_pred hhHHHHHHHHHHHhhcCCCCEEEEEcCccchHHHHHhcCCCCCceEEEEeCChHHHHHHHHHHhhhhhcccccCCCCCCC
Q 002218 696 PLSKQRVEYALQHIKESCATTLVDFGCGSGSLLDSLLDYPTALEKIVGVDISQKSLSRAAKIIHSKLSKKLDAAVPCTDV 775 (952)
Q Consensus 696 PL~~QR~efVldlL~~~k~krVLDIGCGeG~ll~~LAr~g~~~~qVVGVDISeemLe~ArkrLsa~la~~~~~l~Pr~~~ 775 (952)
.++..-.+.+.+.+...++.+|||||||+|.++..+++..+ ..+|+|+|+|+.||+.|++++.. .+.
T Consensus 34 g~~~~Wr~~~i~~~~~~~g~~vLDva~GTGd~a~~~~k~~g-~g~v~~~D~s~~ML~~a~~k~~~------------~~~ 100 (238)
T COG2226 34 GLHRLWRRALISLLGIKPGDKVLDVACGTGDMALLLAKSVG-TGEVVGLDISESMLEVAREKLKK------------KGV 100 (238)
T ss_pred cchHHHHHHHHHhhCCCCCCEEEEecCCccHHHHHHHHhcC-CceEEEEECCHHHHHHHHHHhhc------------cCc
Confidence 44555555566665555889999999999999999998874 68999999999999999988642 233
Q ss_pred ccEEEEEcCccccCCCCCCccEEEEccccccCChhHHHHHHHHHHHccCCC-EEEE
Q 002218 776 KSAVLFDGSITVFDSRLHGFDIGTCLEVIEHMEEDEASQFGNIVLSSFRPR-ILIV 830 (952)
Q Consensus 776 ~nVtf~qGDa~dLpf~d~sFDVVVcieVIEHL~dD~l~~L~eeI~RvLKPG-~LII 830 (952)
.+++|++||++++|+++++||+|++.+.|++++ +....+ ++++|+|||| .+++
T Consensus 101 ~~i~fv~~dAe~LPf~D~sFD~vt~~fglrnv~-d~~~aL-~E~~RVlKpgG~~~v 154 (238)
T COG2226 101 QNVEFVVGDAENLPFPDNSFDAVTISFGLRNVT-DIDKAL-KEMYRVLKPGGRLLV 154 (238)
T ss_pred cceEEEEechhhCCCCCCccCEEEeeehhhcCC-CHHHHH-HHHHHhhcCCeEEEE
Confidence 359999999999999999999999999999999 554555 5799999999 4444
No 7
>PRK11088 rrmA 23S rRNA methyltransferase A; Provisional
Probab=99.58 E-value=1e-14 Score=155.88 Aligned_cols=154 Identities=21% Similarity=0.218 Sum_probs=116.0
Q ss_pred hhhhccCcccchhcccccccccceeeeecccCC-----Chh--------hhhhhhcCCchhHHHHHHHHHHHhhcCCCCE
Q 002218 650 ILAAADDSARTFSLLSSRACCLEYHITLLRVTE-----PPE--------DRMEQALFSPPLSKQRVEYALQHIKESCATT 716 (952)
Q Consensus 650 ~lAa~~~~~~DiSlLs~d~~~LEyyI~LL~v~e-----p~E--------eRye~~~F~PPL~~QR~efVldlL~~~k~kr 716 (952)
-|.|.++|++|++ .++|+++++... +.. .++....+|.++...-.+.+.+.+. ....+
T Consensus 18 ~~~C~~~h~fd~a--------~~Gy~~ll~~~~~~~~~~~d~~~~~~ar~~fl~~g~y~~l~~~i~~~l~~~l~-~~~~~ 88 (272)
T PRK11088 18 SWICPQNHQFDCA--------KEGYVNLLPVQHKRSKDPGDNKEMMQARRAFLDAGHYQPLRDAVANLLAERLD-EKATA 88 (272)
T ss_pred EEEcCCCCCCccc--------cCceEEeccccccCCCCCCcCHHHHHHHHHHHHCCChHHHHHHHHHHHHHhcC-CCCCe
Confidence 4889999999999 999999996322 221 2244566777777655555554443 34578
Q ss_pred EEEEcCccchHHHHHhcCCCC--CceEEEEeCChHHHHHHHHHHhhhhhcccccCCCCCCCccEEEEEcCccccCCCCCC
Q 002218 717 LVDFGCGSGSLLDSLLDYPTA--LEKIVGVDISQKSLSRAAKIIHSKLSKKLDAAVPCTDVKSAVLFDGSITVFDSRLHG 794 (952)
Q Consensus 717 VLDIGCGeG~ll~~LAr~g~~--~~qVVGVDISeemLe~ArkrLsa~la~~~~~l~Pr~~~~nVtf~qGDa~dLpf~d~s 794 (952)
|||+|||+|.++..|++..+. ..+++|+|+|+.|++.|+++. +++.+.++|+.++|+.+++
T Consensus 89 vLDiGcG~G~~~~~l~~~~~~~~~~~v~giD~s~~~l~~A~~~~-----------------~~~~~~~~d~~~lp~~~~s 151 (272)
T PRK11088 89 LLDIGCGEGYYTHALADALPEITTMQLFGLDISKVAIKYAAKRY-----------------PQVTFCVASSHRLPFADQS 151 (272)
T ss_pred EEEECCcCCHHHHHHHHhcccccCCeEEEECCCHHHHHHHHHhC-----------------CCCeEEEeecccCCCcCCc
Confidence 999999999999988865321 147999999999999997642 3688999999999998999
Q ss_pred ccEEEEccccccCChhHHHHHHHHHHHccCCC-EEEEEecCCchh
Q 002218 795 FDIGTCLEVIEHMEEDEASQFGNIVLSSFRPR-ILIVSTPNYEYN 838 (952)
Q Consensus 795 FDVVVcieVIEHL~dD~l~~L~eeI~RvLKPG-~LIISTPN~efN 838 (952)
||+|++...-. +.+++.|+|||| .+++.+|+.+..
T Consensus 152 fD~I~~~~~~~---------~~~e~~rvLkpgG~li~~~p~~~~l 187 (272)
T PRK11088 152 LDAIIRIYAPC---------KAEELARVVKPGGIVITVTPGPRHL 187 (272)
T ss_pred eeEEEEecCCC---------CHHHHHhhccCCCEEEEEeCCCcch
Confidence 99999876411 125699999998 888888886543
No 8
>KOG1270 consensus Methyltransferases [Coenzyme transport and metabolism]
Probab=99.58 E-value=4.2e-15 Score=158.42 Aligned_cols=175 Identities=18% Similarity=0.299 Sum_probs=126.2
Q ss_pred hhHHHHHHHHHHHhhc-----CC------CCEEEEEcCccchHHHHHhcCCCCCceEEEEeCChHHHHHHHHHHhhhhhc
Q 002218 696 PLSKQRVEYALQHIKE-----SC------ATTLVDFGCGSGSLLDSLLDYPTALEKIVGVDISQKSLSRAAKIIHSKLSK 764 (952)
Q Consensus 696 PL~~QR~efVldlL~~-----~k------~krVLDIGCGeG~ll~~LAr~g~~~~qVVGVDISeemLe~ArkrLsa~la~ 764 (952)
.+...|..|+.+-+.. .+ +++|||+|||.|.++..|++.| ++|+|||++++|++.|++... .+
T Consensus 61 ~mn~~Rl~fi~d~~~~~v~~~~p~~k~~~g~~ilDvGCGgGLLSepLArlg---a~V~GID~s~~~V~vA~~h~~--~d- 134 (282)
T KOG1270|consen 61 SMNQTRLPFIRDDLRNRVNNHAPGSKPLLGMKILDVGCGGGLLSEPLARLG---AQVTGIDASDDMVEVANEHKK--MD- 134 (282)
T ss_pred hccchhhhHHHHHHHhcccccCCCccccCCceEEEeccCccccchhhHhhC---CeeEeecccHHHHHHHHHhhh--cC-
Confidence 3455688887765432 12 3789999999999999999999 899999999999999987622 11
Q ss_pred ccccCCCCCC---CccEEEEEcCccccCCCCCCccEEEEccccccCChhHHHHHHHHHHHccCCC-EEEEEecCCchhHH
Q 002218 765 KLDAAVPCTD---VKSAVLFDGSITVFDSRLHGFDIGTCLEVIEHMEEDEASQFGNIVLSSFRPR-ILIVSTPNYEYNAI 840 (952)
Q Consensus 765 ~~~~l~Pr~~---~~nVtf~qGDa~dLpf~d~sFDVVVcieVIEHL~dD~l~~L~eeI~RvLKPG-~LIISTPN~efN~l 840 (952)
|... .-++++.+.+++... +.||+|+|++|+||+.+.+ .|.+.+.+.|||+ .++|+|.|...-++
T Consensus 135 ------P~~~~~~~y~l~~~~~~~E~~~---~~fDaVvcsevleHV~dp~--~~l~~l~~~lkP~G~lfittinrt~lS~ 203 (282)
T KOG1270|consen 135 ------PVLEGAIAYRLEYEDTDVEGLT---GKFDAVVCSEVLEHVKDPQ--EFLNCLSALLKPNGRLFITTINRTILSF 203 (282)
T ss_pred ------chhccccceeeehhhcchhhcc---cccceeeeHHHHHHHhCHH--HHHHHHHHHhCCCCceEeeehhhhHHHh
Confidence 1111 124777888887764 3499999999999998333 4556799999998 99999999988777
Q ss_pred HHhhccCccCCCCcchhhhccccccCCCCccccCHHHHHHHHHHHHHHcCcEEE-EEeec
Q 002218 841 LQKSSSTIQEDDPDEKTQLQSCKFRNHDHKFEWTRDQFNCWATELAARHNYSVE-FSGVG 899 (952)
Q Consensus 841 f~~L~~~ta~eYPde~~g~~~~~fRh~DHkFEWTReEFqsWae~La~q~GYsVe-fsGVG 899 (952)
+..+. +.|.. ..+.|.+.+....+.++.++..|.+ ..+..|. ..|..
T Consensus 204 ~~~i~-------~~E~v-l~ivp~Gth~~ekfi~p~e~~~~l~----~~~~~v~~v~G~~ 251 (282)
T KOG1270|consen 204 AGTIF-------LAEIV-LRIVPKGTHTWEKFINPEELTSILN----ANGAQVNDVVGEV 251 (282)
T ss_pred hcccc-------HHHHH-HHhcCCCCcCHHHcCCHHHHHHHHH----hcCcchhhhhccc
Confidence 76542 22222 2356666666667799999997755 3455553 34433
No 9
>PF01209 Ubie_methyltran: ubiE/COQ5 methyltransferase family; InterPro: IPR004033 A number of methyltransferases have been shown to share regions of similarities []. Apart from the ubiquinone/menaquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the ubiE gene of Escherichia coli), the ubiquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the COQ5 gene of Saccharomyces cerevisiae) and the menaquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the MENH gene of Bacillus subtilis), this family also includes methyltransferases involved in biotin and sterol biosynthesis and in phosphatidylethanolamine methylation.; GO: 0008168 methyltransferase activity; PDB: 1VL5_C.
Probab=99.58 E-value=8.7e-15 Score=154.63 Aligned_cols=113 Identities=20% Similarity=0.314 Sum_probs=80.4
Q ss_pred HHHHHhhcCCCCEEEEEcCccchHHHHHhcCCCCCceEEEEeCChHHHHHHHHHHhhhhhcccccCCCCCCCccEEEEEc
Q 002218 704 YALQHIKESCATTLVDFGCGSGSLLDSLLDYPTALEKIVGVDISQKSLSRAAKIIHSKLSKKLDAAVPCTDVKSAVLFDG 783 (952)
Q Consensus 704 fVldlL~~~k~krVLDIGCGeG~ll~~LAr~g~~~~qVVGVDISeemLe~ArkrLsa~la~~~~~l~Pr~~~~nVtf~qG 783 (952)
.+.+.+...++.+|||+|||+|.++..+++..++..+|+|+|+|+.||+.|++++.. ....+|++.++
T Consensus 38 ~~~~~~~~~~g~~vLDv~~GtG~~~~~l~~~~~~~~~v~~vD~s~~ML~~a~~k~~~------------~~~~~i~~v~~ 105 (233)
T PF01209_consen 38 KLIKLLGLRPGDRVLDVACGTGDVTRELARRVGPNGKVVGVDISPGMLEVARKKLKR------------EGLQNIEFVQG 105 (233)
T ss_dssp HHHHHHT--S--EEEEET-TTSHHHHHHGGGSS---EEEEEES-HHHHHHHHHHHHH------------TT--SEEEEE-
T ss_pred HHHhccCCCCCCEEEEeCCChHHHHHHHHHHCCCccEEEEecCCHHHHHHHHHHHHh------------hCCCCeeEEEc
Confidence 456666667788999999999999999988754557999999999999999988753 22348999999
Q ss_pred CccccCCCCCCccEEEEccccccCChhHHHHHHHHHHHccCCC-EEEE
Q 002218 784 SITVFDSRLHGFDIGTCLEVIEHMEEDEASQFGNIVLSSFRPR-ILIV 830 (952)
Q Consensus 784 Da~dLpf~d~sFDVVVcieVIEHL~dD~l~~L~eeI~RvLKPG-~LII 830 (952)
|++++|+++++||+|+|.+.|++++ +....+ +++.|+|||| .++|
T Consensus 106 da~~lp~~d~sfD~v~~~fglrn~~-d~~~~l-~E~~RVLkPGG~l~i 151 (233)
T PF01209_consen 106 DAEDLPFPDNSFDAVTCSFGLRNFP-DRERAL-REMYRVLKPGGRLVI 151 (233)
T ss_dssp BTTB--S-TT-EEEEEEES-GGG-S-SHHHHH-HHHHHHEEEEEEEEE
T ss_pred CHHHhcCCCCceeEEEHHhhHHhhC-CHHHHH-HHHHHHcCCCeEEEE
Confidence 9999999999999999999999999 444555 5799999998 4444
No 10
>PLN02233 ubiquinone biosynthesis methyltransferase
Probab=99.57 E-value=4.6e-14 Score=150.71 Aligned_cols=120 Identities=21% Similarity=0.182 Sum_probs=93.9
Q ss_pred HHHHhhcCCCCEEEEEcCccchHHHHHhcCCCCCceEEEEeCChHHHHHHHHHHhhhhhcccccCCCCCCCccEEEEEcC
Q 002218 705 ALQHIKESCATTLVDFGCGSGSLLDSLLDYPTALEKIVGVDISQKSLSRAAKIIHSKLSKKLDAAVPCTDVKSAVLFDGS 784 (952)
Q Consensus 705 VldlL~~~k~krVLDIGCGeG~ll~~LAr~g~~~~qVVGVDISeemLe~ArkrLsa~la~~~~~l~Pr~~~~nVtf~qGD 784 (952)
+.+.+...++.+|||+|||+|.++..+++..++..+|+|+|+|++|++.|+++..... .....++++.++|
T Consensus 65 ~~~~~~~~~~~~VLDlGcGtG~~~~~la~~~~~~~~V~gvD~S~~ml~~A~~r~~~~~---------~~~~~~i~~~~~d 135 (261)
T PLN02233 65 AVSWSGAKMGDRVLDLCCGSGDLAFLLSEKVGSDGKVMGLDFSSEQLAVAASRQELKA---------KSCYKNIEWIEGD 135 (261)
T ss_pred HHHHhCCCCCCEEEEECCcCCHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHhhhhh---------hccCCCeEEEEcc
Confidence 3444555567899999999999999888764344699999999999999987643110 1123479999999
Q ss_pred ccccCCCCCCccEEEEccccccCChhHHHHHHHHHHHccCCC-EEEEEecCC
Q 002218 785 ITVFDSRLHGFDIGTCLEVIEHMEEDEASQFGNIVLSSFRPR-ILIVSTPNY 835 (952)
Q Consensus 785 a~dLpf~d~sFDVVVcieVIEHL~dD~l~~L~eeI~RvLKPG-~LIISTPN~ 835 (952)
+.++|+++++||+|++..+++|++ ++...+ +++.|+|||| .+++.+.+.
T Consensus 136 ~~~lp~~~~sfD~V~~~~~l~~~~-d~~~~l-~ei~rvLkpGG~l~i~d~~~ 185 (261)
T PLN02233 136 ATDLPFDDCYFDAITMGYGLRNVV-DRLKAM-QEMYRVLKPGSRVSILDFNK 185 (261)
T ss_pred cccCCCCCCCEeEEEEecccccCC-CHHHHH-HHHHHHcCcCcEEEEEECCC
Confidence 999999999999999999999998 444444 5799999999 666665543
No 11
>PF13489 Methyltransf_23: Methyltransferase domain; PDB: 3JWJ_A 3JWH_B 2AOV_B 2AOT_A 1JQD_B 2AOX_A 1JQE_A 2AOU_B 2AOW_A 3DLI_C ....
Probab=99.56 E-value=3.1e-14 Score=136.61 Aligned_cols=144 Identities=22% Similarity=0.338 Sum_probs=103.0
Q ss_pred HHHHHhh-cCCCCEEEEEcCccchHHHHHhcCCCCCceEEEEeCChHHHHHHHHHHhhhhhcccccCCCCCCCccEEEEE
Q 002218 704 YALQHIK-ESCATTLVDFGCGSGSLLDSLLDYPTALEKIVGVDISQKSLSRAAKIIHSKLSKKLDAAVPCTDVKSAVLFD 782 (952)
Q Consensus 704 fVldlL~-~~k~krVLDIGCGeG~ll~~LAr~g~~~~qVVGVDISeemLe~ArkrLsa~la~~~~~l~Pr~~~~nVtf~q 782 (952)
.+..+.. ..+..+|||||||.|.++..|++.+ .+++|+|+++.+++. . ++....
T Consensus 12 ~~~~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~---~~~~g~D~~~~~~~~--~--------------------~~~~~~ 66 (161)
T PF13489_consen 12 LLERLLPRLKPGKRVLDIGCGTGSFLRALAKRG---FEVTGVDISPQMIEK--R--------------------NVVFDN 66 (161)
T ss_dssp HHHHHHTCTTTTSEEEEESSTTSHHHHHHHHTT---SEEEEEESSHHHHHH--T--------------------TSEEEE
T ss_pred HHHHHhcccCCCCEEEEEcCCCCHHHHHHHHhC---CEEEEEECCHHHHhh--h--------------------hhhhhh
Confidence 3333443 3577899999999999999999887 699999999999988 1 112222
Q ss_pred cCccccCCCCCCccEEEEccccccCChhHHHHHHHHHHHccCCC-EEEEEecCCch-h-HHHHhhccCccCCCCcchhhh
Q 002218 783 GSITVFDSRLHGFDIGTCLEVIEHMEEDEASQFGNIVLSSFRPR-ILIVSTPNYEY-N-AILQKSSSTIQEDDPDEKTQL 859 (952)
Q Consensus 783 GDa~dLpf~d~sFDVVVcieVIEHL~dD~l~~L~eeI~RvLKPG-~LIISTPN~ef-N-~lf~~L~~~ta~eYPde~~g~ 859 (952)
.+....+...+.||+|+|..+|||++ +.. .+++++.++|||| .+++++|+... . ..+... .|
T Consensus 67 ~~~~~~~~~~~~fD~i~~~~~l~~~~-d~~-~~l~~l~~~LkpgG~l~~~~~~~~~~~~~~~~~~------~~------- 131 (161)
T PF13489_consen 67 FDAQDPPFPDGSFDLIICNDVLEHLP-DPE-EFLKELSRLLKPGGYLVISDPNRDDPSPRSFLKW------RY------- 131 (161)
T ss_dssp EECHTHHCHSSSEEEEEEESSGGGSS-HHH-HHHHHHHHCEEEEEEEEEEEEBTTSHHHHHHHHC------CG-------
T ss_pred hhhhhhhccccchhhHhhHHHHhhcc-cHH-HHHHHHHHhcCCCCEEEEEEcCCcchhhhHHHhc------CC-------
Confidence 22234445678999999999999999 444 4446799999998 99999998642 1 122211 01
Q ss_pred ccccccCCCCccccCHHHHHHHHHHHHHHcCcEEE
Q 002218 860 QSCKFRNHDHKFEWTRDQFNCWATELAARHNYSVE 894 (952)
Q Consensus 860 ~~~~fRh~DHkFEWTReEFqsWae~La~q~GYsVe 894 (952)
......|...++++++. .+++++||++.
T Consensus 132 ---~~~~~~~~~~~~~~~~~----~ll~~~G~~iv 159 (161)
T PF13489_consen 132 ---DRPYGGHVHFFSPDELR----QLLEQAGFEIV 159 (161)
T ss_dssp ---TCHHTTTTEEBBHHHHH----HHHHHTTEEEE
T ss_pred ---cCccCceeccCCHHHHH----HHHHHCCCEEE
Confidence 11112677889999999 56788899874
No 12
>TIGR02021 BchM-ChlM magnesium protoporphyrin O-methyltransferase. This model represents the S-adenosylmethionine-dependent O-methyltransferase responsible for methylation of magnesium protoporphyrin IX. This step is essentiasl for the biosynthesis of both chlorophyll and bacteriochlorophyll. This model encompasses two closely related clades, from cyanobacteria (and plants) where it is called ChlM and other photosynthetic bacteria where it is known as BchM.
Probab=99.55 E-value=2e-13 Score=140.83 Aligned_cols=160 Identities=16% Similarity=0.196 Sum_probs=115.0
Q ss_pred HHHHHhh--cCCCCEEEEEcCccchHHHHHhcCCCCCceEEEEeCChHHHHHHHHHHhhhhhcccccCCCCCCCccEEEE
Q 002218 704 YALQHIK--ESCATTLVDFGCGSGSLLDSLLDYPTALEKIVGVDISQKSLSRAAKIIHSKLSKKLDAAVPCTDVKSAVLF 781 (952)
Q Consensus 704 fVldlL~--~~k~krVLDIGCGeG~ll~~LAr~g~~~~qVVGVDISeemLe~ArkrLsa~la~~~~~l~Pr~~~~nVtf~ 781 (952)
.+.+.+. ..++.+|||+|||+|.++..+++.+ .+|+|+|+|++|++.|++++... ....++++.
T Consensus 44 ~~~~~l~~~~~~~~~vLDiGcG~G~~~~~la~~~---~~v~gvD~s~~~i~~a~~~~~~~-----------~~~~~i~~~ 109 (219)
T TIGR02021 44 KLLDWLPKDPLKGKRVLDAGCGTGLLSIELAKRG---AIVKAVDISEQMVQMARNRAQGR-----------DVAGNVEFE 109 (219)
T ss_pred HHHHHHhcCCCCCCEEEEEeCCCCHHHHHHHHCC---CEEEEEECCHHHHHHHHHHHHhc-----------CCCCceEEE
Confidence 3444444 3467899999999999999999876 69999999999999998876421 112378999
Q ss_pred EcCccccCCCCCCccEEEEccccccCChhHHHHHHHHHHHccCCCEEEEEecCCchhHHHHhhccCccCCCCcchhhhcc
Q 002218 782 DGSITVFDSRLHGFDIGTCLEVIEHMEEDEASQFGNIVLSSFRPRILIVSTPNYEYNAILQKSSSTIQEDDPDEKTQLQS 861 (952)
Q Consensus 782 qGDa~dLpf~d~sFDVVVcieVIEHL~dD~l~~L~eeI~RvLKPG~LIISTPN~efN~lf~~L~~~ta~eYPde~~g~~~ 861 (952)
++|+.+++ .+||+|++.++++|++++....+..++.++++++.++..+|...+...+..+.. .+
T Consensus 110 ~~d~~~~~---~~fD~ii~~~~l~~~~~~~~~~~l~~i~~~~~~~~~i~~~~~~~~~~~~~~~~~----~~--------- 173 (219)
T TIGR02021 110 VNDLLSLC---GEFDIVVCMDVLIHYPASDMAKALGHLASLTKERVIFTFAPKTAWLAFLKMIGE----LF--------- 173 (219)
T ss_pred ECChhhCC---CCcCEEEEhhHHHhCCHHHHHHHHHHHHHHhCCCEEEEECCCchHHHHHHHHHh----hC---------
Confidence 99998875 789999999999999866666666779999998855555555444433332211 11
Q ss_pred ccccCCCCccccCHHHHHHHHHHHHHHcCcEEEEEe
Q 002218 862 CKFRNHDHKFEWTRDQFNCWATELAARHNYSVEFSG 897 (952)
Q Consensus 862 ~~fRh~DHkFEWTReEFqsWae~La~q~GYsVefsG 897 (952)
.......+.+.++++++. +++++.||.+.-..
T Consensus 174 ~~~~~~~~~~~~~~~~~~----~~l~~~Gf~v~~~~ 205 (219)
T TIGR02021 174 PGSSRATSAYLHPMTDLE----RALGELGWKIVREG 205 (219)
T ss_pred cCcccccceEEecHHHHH----HHHHHcCceeeeee
Confidence 112223445667888888 56778899986544
No 13
>PF08241 Methyltransf_11: Methyltransferase domain; InterPro: IPR013216 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (SAM) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalyzed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. This entry represents a methyltransferase domain found in a large variety of SAM-dependent methyltransferases including, but not limited to: Arsenite methyltransferase (2.1.1.137 from EC) which converts arsenical compounds to their methylated forms [] Biotin synthesis protein bioC, which is involved in the early stages of biotin biosyntheis [] Arginine N-methyltransferase 1, an arginine-methylating enzyme which acts on residues present in a glycine and argine-rich domain and can methylate histones [] Hexaprenyldihydroxybenzoate methyltransferase (2.1.1.114 from EC), a mitochodrial enzyme involved in ubiquinone biosynthesis [] A probable cobalt-precorrin-6Y C(15)-methyltransferase thought to be involved in adenosylcobalamin biosynthesis [] Sterol 24-C-methyltransferase (2.1.1.41 from EC), shown to participate in ergosterol biosynthesis [] 3-demethylubiquinone-9 3-methyltransferase (2.1.1.64 from EC) involved in ubiquinone biosynthesis [] Structural studies show that this domain forms the Rossman-like alpha-beta fold typical of SAM-dependent methyltransferases [, , ]. ; GO: 0008168 methyltransferase activity, 0008152 metabolic process; PDB: 3CGG_B 3CCF_B 3BKW_B 2PXX_A 3I9F_A 2YQZ_B 2YR0_A 3BUS_A 3EGE_A 3G5L_B ....
Probab=99.54 E-value=4.1e-14 Score=123.79 Aligned_cols=94 Identities=23% Similarity=0.400 Sum_probs=76.4
Q ss_pred EEEcCccchHHHHHhcCCCCCceEEEEeCChHHHHHHHHHHhhhhhcccccCCCCCCCccEEEEEcCccccCCCCCCccE
Q 002218 718 VDFGCGSGSLLDSLLDYPTALEKIVGVDISQKSLSRAAKIIHSKLSKKLDAAVPCTDVKSAVLFDGSITVFDSRLHGFDI 797 (952)
Q Consensus 718 LDIGCGeG~ll~~LAr~g~~~~qVVGVDISeemLe~ArkrLsa~la~~~~~l~Pr~~~~nVtf~qGDa~dLpf~d~sFDV 797 (952)
||+|||+|.++..|++.+ ..+|+|+|+++++++.++++.. ..++.+.++|+.++++++++||+
T Consensus 1 LdiG~G~G~~~~~l~~~~--~~~v~~~D~~~~~~~~~~~~~~---------------~~~~~~~~~d~~~l~~~~~sfD~ 63 (95)
T PF08241_consen 1 LDIGCGTGRFAAALAKRG--GASVTGIDISEEMLEQARKRLK---------------NEGVSFRQGDAEDLPFPDNSFDV 63 (95)
T ss_dssp EEET-TTSHHHHHHHHTT--TCEEEEEES-HHHHHHHHHHTT---------------TSTEEEEESBTTSSSS-TT-EEE
T ss_pred CEecCcCCHHHHHHHhcc--CCEEEEEeCCHHHHHHHHhccc---------------ccCchheeehHHhCccccccccc
Confidence 899999999999999983 2899999999999999988643 13566999999999999999999
Q ss_pred EEEccccccCChhHHHHHHHHHHHccCCC-EEEE
Q 002218 798 GTCLEVIEHMEEDEASQFGNIVLSSFRPR-ILIV 830 (952)
Q Consensus 798 VVcieVIEHL~dD~l~~L~eeI~RvLKPG-~LII 830 (952)
|++..+++|++ +.. .+.+++.|+|||| .++|
T Consensus 64 v~~~~~~~~~~-~~~-~~l~e~~rvLk~gG~l~~ 95 (95)
T PF08241_consen 64 VFSNSVLHHLE-DPE-AALREIYRVLKPGGRLVI 95 (95)
T ss_dssp EEEESHGGGSS-HHH-HHHHHHHHHEEEEEEEEE
T ss_pred cccccceeecc-CHH-HHHHHHHHHcCcCeEEeC
Confidence 99999999994 554 4446799999999 5553
No 14
>PF12847 Methyltransf_18: Methyltransferase domain; PDB: 3G2Q_A 3G2O_A 3G2M_B 3G2P_B 3D2L_B 1IM8_B 3NJR_A 3E05_H 3EVZ_A 3HM2_A ....
Probab=99.52 E-value=1.7e-13 Score=125.36 Aligned_cols=106 Identities=25% Similarity=0.344 Sum_probs=83.2
Q ss_pred CCCEEEEEcCccchHHHHHhc--CCCCCceEEEEeCChHHHHHHHHHHhhhhhcccccCCCCCCCccEEEEEcCc-cccC
Q 002218 713 CATTLVDFGCGSGSLLDSLLD--YPTALEKIVGVDISQKSLSRAAKIIHSKLSKKLDAAVPCTDVKSAVLFDGSI-TVFD 789 (952)
Q Consensus 713 k~krVLDIGCGeG~ll~~LAr--~g~~~~qVVGVDISeemLe~ArkrLsa~la~~~~~l~Pr~~~~nVtf~qGDa-~dLp 789 (952)
++.+|||||||+|.++..+++ .+ .+|+|||+|+++++.|+++.... ....+++++++|+ ...+
T Consensus 1 p~~~vLDlGcG~G~~~~~l~~~~~~---~~v~gvD~s~~~~~~a~~~~~~~-----------~~~~~i~~~~~d~~~~~~ 66 (112)
T PF12847_consen 1 PGGRVLDLGCGTGRLSIALARLFPG---ARVVGVDISPEMLEIARERAAEE-----------GLSDRITFVQGDAEFDPD 66 (112)
T ss_dssp TTCEEEEETTTTSHHHHHHHHHHTT---SEEEEEESSHHHHHHHHHHHHHT-----------TTTTTEEEEESCCHGGTT
T ss_pred CCCEEEEEcCcCCHHHHHHHhcCCC---CEEEEEeCCHHHHHHHHHHHHhc-----------CCCCCeEEEECccccCcc
Confidence 468999999999999999999 44 89999999999999999887321 2346899999999 3232
Q ss_pred CCCCCccEEEEcc-ccccCCh-hHHHHHHHHHHHccCCC-EEEEEec
Q 002218 790 SRLHGFDIGTCLE-VIEHMEE-DEASQFGNIVLSSFRPR-ILIVSTP 833 (952)
Q Consensus 790 f~d~sFDVVVcie-VIEHL~d-D~l~~L~eeI~RvLKPG-~LIISTP 833 (952)
....||+|++.. .++++.. ++...+.+.+.+.|+|| .++|+++
T Consensus 67 -~~~~~D~v~~~~~~~~~~~~~~~~~~~l~~~~~~L~pgG~lvi~~~ 112 (112)
T PF12847_consen 67 -FLEPFDLVICSGFTLHFLLPLDERRRVLERIRRLLKPGGRLVINTC 112 (112)
T ss_dssp -TSSCEEEEEECSGSGGGCCHHHHHHHHHHHHHHHEEEEEEEEEEE-
T ss_pred -cCCCCCEEEECCCccccccchhHHHHHHHHHHHhcCCCcEEEEEEC
Confidence 345799999999 5665543 34556667899999999 7777764
No 15
>PTZ00098 phosphoethanolamine N-methyltransferase; Provisional
Probab=99.51 E-value=2.4e-13 Score=145.39 Aligned_cols=127 Identities=17% Similarity=0.171 Sum_probs=100.5
Q ss_pred cCCchhHHHHHHHHHHHhhcCCCCEEEEEcCccchHHHHHhcCCCCCceEEEEeCChHHHHHHHHHHhhhhhcccccCCC
Q 002218 692 LFSPPLSKQRVEYALQHIKESCATTLVDFGCGSGSLLDSLLDYPTALEKIVGVDISQKSLSRAAKIIHSKLSKKLDAAVP 771 (952)
Q Consensus 692 ~F~PPL~~QR~efVldlL~~~k~krVLDIGCGeG~ll~~LAr~g~~~~qVVGVDISeemLe~ArkrLsa~la~~~~~l~P 771 (952)
.|..|-.......+++.+...++.+|||||||+|..+..|++..+ .+|+|+|+|+.|++.|+++..
T Consensus 31 ~~~~~gg~~~~~~~l~~l~l~~~~~VLDiGcG~G~~a~~la~~~~--~~v~giD~s~~~~~~a~~~~~------------ 96 (263)
T PTZ00098 31 DYISSGGIEATTKILSDIELNENSKVLDIGSGLGGGCKYINEKYG--AHVHGVDICEKMVNIAKLRNS------------ 96 (263)
T ss_pred CCCCCCchHHHHHHHHhCCCCCCCEEEEEcCCCChhhHHHHhhcC--CEEEEEECCHHHHHHHHHHcC------------
Confidence 344444444455666667777889999999999999998876532 699999999999999987642
Q ss_pred CCCCccEEEEEcCccccCCCCCCccEEEEccccccCChhHHHHHHHHHHHccCCC-EEEEEecC
Q 002218 772 CTDVKSAVLFDGSITVFDSRLHGFDIGTCLEVIEHMEEDEASQFGNIVLSSFRPR-ILIVSTPN 834 (952)
Q Consensus 772 r~~~~nVtf~qGDa~dLpf~d~sFDVVVcieVIEHL~dD~l~~L~eeI~RvLKPG-~LIISTPN 834 (952)
...++.+..+|+.+.++++++||+|++.++++|++.+....+.+++.++|||| .++++.+.
T Consensus 97 --~~~~i~~~~~D~~~~~~~~~~FD~V~s~~~l~h~~~~d~~~~l~~i~r~LkPGG~lvi~d~~ 158 (263)
T PTZ00098 97 --DKNKIEFEANDILKKDFPENTFDMIYSRDAILHLSYADKKKLFEKCYKWLKPNGILLITDYC 158 (263)
T ss_pred --cCCceEEEECCcccCCCCCCCeEEEEEhhhHHhCCHHHHHHHHHHHHHHcCCCcEEEEEEec
Confidence 12479999999998888888999999999999998545556667899999999 77776653
No 16
>PLN02244 tocopherol O-methyltransferase
Probab=99.51 E-value=4.8e-13 Score=148.07 Aligned_cols=108 Identities=20% Similarity=0.190 Sum_probs=89.3
Q ss_pred CCCCEEEEEcCccchHHHHHhcCCCCCceEEEEeCChHHHHHHHHHHhhhhhcccccCCCCCCCccEEEEEcCccccCCC
Q 002218 712 SCATTLVDFGCGSGSLLDSLLDYPTALEKIVGVDISQKSLSRAAKIIHSKLSKKLDAAVPCTDVKSAVLFDGSITVFDSR 791 (952)
Q Consensus 712 ~k~krVLDIGCGeG~ll~~LAr~g~~~~qVVGVDISeemLe~ArkrLsa~la~~~~~l~Pr~~~~nVtf~qGDa~dLpf~ 791 (952)
.++.+|||||||+|.++..|++..+ .+|+|||+|+.|++.|+++... .....++++.++|+.++++.
T Consensus 117 ~~~~~VLDiGCG~G~~~~~La~~~g--~~v~gvD~s~~~i~~a~~~~~~-----------~g~~~~v~~~~~D~~~~~~~ 183 (340)
T PLN02244 117 KRPKRIVDVGCGIGGSSRYLARKYG--ANVKGITLSPVQAARANALAAA-----------QGLSDKVSFQVADALNQPFE 183 (340)
T ss_pred CCCCeEEEecCCCCHHHHHHHHhcC--CEEEEEECCHHHHHHHHHHHHh-----------cCCCCceEEEEcCcccCCCC
Confidence 4568999999999999999998642 7999999999999999876542 12234799999999999998
Q ss_pred CCCccEEEEccccccCChhHHHHHHHHHHHccCCC-EEEEEecC
Q 002218 792 LHGFDIGTCLEVIEHMEEDEASQFGNIVLSSFRPR-ILIVSTPN 834 (952)
Q Consensus 792 d~sFDVVVcieVIEHL~dD~l~~L~eeI~RvLKPG-~LIISTPN 834 (952)
++.||+|++.++++|++ +.. .+.+++.++|||| .+++.+..
T Consensus 184 ~~~FD~V~s~~~~~h~~-d~~-~~l~e~~rvLkpGG~lvi~~~~ 225 (340)
T PLN02244 184 DGQFDLVWSMESGEHMP-DKR-KFVQELARVAAPGGRIIIVTWC 225 (340)
T ss_pred CCCccEEEECCchhccC-CHH-HHHHHHHHHcCCCcEEEEEEec
Confidence 99999999999999998 443 4446799999998 77776643
No 17
>PRK14103 trans-aconitate 2-methyltransferase; Provisional
Probab=99.49 E-value=4e-13 Score=141.91 Aligned_cols=107 Identities=19% Similarity=0.246 Sum_probs=86.6
Q ss_pred HHHHhhcCCCCEEEEEcCccchHHHHHhcCCCCCceEEEEeCChHHHHHHHHHHhhhhhcccccCCCCCCCccEEEEEcC
Q 002218 705 ALQHIKESCATTLVDFGCGSGSLLDSLLDYPTALEKIVGVDISQKSLSRAAKIIHSKLSKKLDAAVPCTDVKSAVLFDGS 784 (952)
Q Consensus 705 VldlL~~~k~krVLDIGCGeG~ll~~LAr~g~~~~qVVGVDISeemLe~ArkrLsa~la~~~~~l~Pr~~~~nVtf~qGD 784 (952)
+++.+...++.+|||||||+|.++..|++.. +..+|+|+|+|+.|++.|+++ ++++.++|
T Consensus 21 ll~~l~~~~~~~vLDlGcG~G~~~~~l~~~~-p~~~v~gvD~s~~~~~~a~~~-------------------~~~~~~~d 80 (255)
T PRK14103 21 LLARVGAERARRVVDLGCGPGNLTRYLARRW-PGAVIEALDSSPEMVAAARER-------------------GVDARTGD 80 (255)
T ss_pred HHHhCCCCCCCEEEEEcCCCCHHHHHHHHHC-CCCEEEEEECCHHHHHHHHhc-------------------CCcEEEcC
Confidence 3444455567899999999999999999874 347999999999999999642 47888999
Q ss_pred ccccCCCCCCccEEEEccccccCChhHHHHHHHHHHHccCCC-EEEEEecC
Q 002218 785 ITVFDSRLHGFDIGTCLEVIEHMEEDEASQFGNIVLSSFRPR-ILIVSTPN 834 (952)
Q Consensus 785 a~dLpf~d~sFDVVVcieVIEHL~dD~l~~L~eeI~RvLKPG-~LIISTPN 834 (952)
+.+++ .++.||+|+|..++||++ +....+ ++++++|||| .+++..|+
T Consensus 81 ~~~~~-~~~~fD~v~~~~~l~~~~-d~~~~l-~~~~~~LkpgG~l~~~~~~ 128 (255)
T PRK14103 81 VRDWK-PKPDTDVVVSNAALQWVP-EHADLL-VRWVDELAPGSWIAVQVPG 128 (255)
T ss_pred hhhCC-CCCCceEEEEehhhhhCC-CHHHHH-HHHHHhCCCCcEEEEEcCC
Confidence 98774 457899999999999998 444444 5799999999 77777665
No 18
>PLN02585 magnesium protoporphyrin IX methyltransferase
Probab=99.49 E-value=1.3e-12 Score=143.98 Aligned_cols=170 Identities=22% Similarity=0.261 Sum_probs=112.9
Q ss_pred HHHHHHHHHhhc---CCCCEEEEEcCccchHHHHHhcCCCCCceEEEEeCChHHHHHHHHHHhhhhhcccccCCCCCCCc
Q 002218 700 QRVEYALQHIKE---SCATTLVDFGCGSGSLLDSLLDYPTALEKIVGVDISQKSLSRAAKIIHSKLSKKLDAAVPCTDVK 776 (952)
Q Consensus 700 QR~efVldlL~~---~k~krVLDIGCGeG~ll~~LAr~g~~~~qVVGVDISeemLe~ArkrLsa~la~~~~~l~Pr~~~~ 776 (952)
+.++.+.+.+.. .++.+|||+|||+|.++..|++.+ .+|+|+|+|+.|++.|+++....... .....
T Consensus 128 ~~v~~~l~~l~~~~~~~~~~VLDlGcGtG~~a~~la~~g---~~V~gvD~S~~ml~~A~~~~~~~~~~-------~~~~~ 197 (315)
T PLN02585 128 QTVEKVLLWLAEDGSLAGVTVCDAGCGTGSLAIPLALEG---AIVSASDISAAMVAEAERRAKEALAA-------LPPEV 197 (315)
T ss_pred HHHHHHHHHHHhcCCCCCCEEEEecCCCCHHHHHHHHCC---CEEEEEECCHHHHHHHHHHHHhcccc-------ccccc
Confidence 344555565543 256899999999999999999987 79999999999999999876432100 01123
Q ss_pred cEEEEEcCccccCCCCCCccEEEEccccccCChhHHHHHHHHHHHccCCCEEEEE-ecCCchhHHHHhhccCccCCCCcc
Q 002218 777 SAVLFDGSITVFDSRLHGFDIGTCLEVIEHMEEDEASQFGNIVLSSFRPRILIVS-TPNYEYNAILQKSSSTIQEDDPDE 855 (952)
Q Consensus 777 nVtf~qGDa~dLpf~d~sFDVVVcieVIEHL~dD~l~~L~eeI~RvLKPG~LIIS-TPN~efN~lf~~L~~~ta~eYPde 855 (952)
+++|..+|+.++ ++.||+|+|.++++|++++....+.+.+.+ +.+|.++|+ .|+..+...+..+ + ..
T Consensus 198 ~~~f~~~Dl~~l---~~~fD~Vv~~~vL~H~p~~~~~~ll~~l~~-l~~g~liIs~~p~~~~~~~l~~~-g---~~---- 265 (315)
T PLN02585 198 LPKFEANDLESL---SGKYDTVTCLDVLIHYPQDKADGMIAHLAS-LAEKRLIISFAPKTLYYDILKRI-G---EL---- 265 (315)
T ss_pred ceEEEEcchhhc---CCCcCEEEEcCEEEecCHHHHHHHHHHHHh-hcCCEEEEEeCCcchHHHHHHHH-H---hh----
Confidence 678888888654 478999999999999987666666665665 456644554 4553332333221 0 01
Q ss_pred hhhhccccccCCCCccccCHHHHHHHHHHHHHHcCcEEEEEeecC
Q 002218 856 KTQLQSCKFRNHDHKFEWTRDQFNCWATELAARHNYSVEFSGVGG 900 (952)
Q Consensus 856 ~~g~~~~~fRh~DHkFEWTReEFqsWae~La~q~GYsVefsGVG~ 900 (952)
+.........+.+++++++ +++++.||.|....+-.
T Consensus 266 -----~~g~~~~~r~y~~s~eel~----~lL~~AGf~v~~~~~~~ 301 (315)
T PLN02585 266 -----FPGPSKATRAYLHAEADVE----RALKKAGWKVARREMTA 301 (315)
T ss_pred -----cCCCCcCceeeeCCHHHHH----HHHHHCCCEEEEEEEee
Confidence 1111111123456899999 56788899997666544
No 19
>PF02353 CMAS: Mycolic acid cyclopropane synthetase; InterPro: IPR003333 This entry represents mycolic acid cyclopropane synthases and related enzymes, including CmaA1, CmaA2 (cyclopropane mycolic acid synthase A1 and A2) and MmaA1-4 (methoxymycolic acid synthase A1-4). All are thought to be S-adenosyl-L-methionine (SAM) utilising methyltransferases []. Mycolic acid cyclopropane synthase or cyclopropane-fatty-acyl-phospholipid synthase (CFA synthase) 2.1.1.79 from EC catalyses the reaction: S-adenosyl-L-methionine + phospholipid olefinic fatty acid -> S-adenosyl-L-homocysteine + phospholipid cyclopropane fatty acid. The major mycolic acid produced by Mycobacterium tuberculosis contains two cis-cyclopropanes in the meromycolate chain. Cyclopropanation may contribute to the structural integrity of the cell wall complex [].; GO: 0008610 lipid biosynthetic process; PDB: 3HA5_A 2FK8_A 3HA7_A 3HA3_A 2FK7_A 1KPG_D 1KP9_B 1KPH_D 3VC2_E 3VC1_D ....
Probab=99.48 E-value=2e-13 Score=147.58 Aligned_cols=150 Identities=15% Similarity=0.218 Sum_probs=100.6
Q ss_pred cCcccchhcccccccccceeeeecccCC-ChhhhhhhhcCCchhHHHHHHHHHHHhhcCCCCEEEEEcCccchHHHHHhc
Q 002218 655 DDSARTFSLLSSRACCLEYHITLLRVTE-PPEDRMEQALFSPPLSKQRVEYALQHIKESCATTLVDFGCGSGSLLDSLLD 733 (952)
Q Consensus 655 ~~~~~DiSlLs~d~~~LEyyI~LL~v~e-p~EeRye~~~F~PPL~~QR~efVldlL~~~k~krVLDIGCGeG~ll~~LAr 733 (952)
.+.+.|+-.|..+.. +.|+.-+....+ .+++ .....++.+.+.+...++.+|||||||.|.++..+++
T Consensus 14 YDl~ndfy~l~Ld~~-m~YS~~~~~~~~~~Le~----------AQ~~k~~~~~~~~~l~~G~~vLDiGcGwG~~~~~~a~ 82 (273)
T PF02353_consen 14 YDLGNDFYRLFLDPT-MKYSCAYFDEGDDTLEE----------AQERKLDLLCEKLGLKPGDRVLDIGCGWGGLAIYAAE 82 (273)
T ss_dssp HTS-HHHHTTTS-TT----S----SSTT--HHH----------HHHHHHHHHHTTTT--TT-EEEEES-TTSHHHHHHHH
T ss_pred cCCcHHHHHHhcCCC-CCCCCeecCCchhhHHH----------HHHHHHHHHHHHhCCCCCCEEEEeCCCccHHHHHHHH
Confidence 455566666666665 777766654322 2221 2344567788888888999999999999999999999
Q ss_pred CCCCCceEEEEeCChHHHHHHHHHHhhhhhcccccCCCCCCCccEEEEEcCccccCCCCCCccEEEEccccccCChhHHH
Q 002218 734 YPTALEKIVGVDISQKSLSRAAKIIHSKLSKKLDAAVPCTDVKSAVLFDGSITVFDSRLHGFDIGTCLEVIEHMEEDEAS 813 (952)
Q Consensus 734 ~g~~~~qVVGVDISeemLe~ArkrLsa~la~~~~~l~Pr~~~~nVtf~qGDa~dLpf~d~sFDVVVcieVIEHL~dD~l~ 813 (952)
..+ .+|+||.+|++..+.+++++.. ++....+++..+|..+++. .||.|++++++||+......
T Consensus 83 ~~g--~~v~gitlS~~Q~~~a~~~~~~-----------~gl~~~v~v~~~D~~~~~~---~fD~IvSi~~~Ehvg~~~~~ 146 (273)
T PF02353_consen 83 RYG--CHVTGITLSEEQAEYARERIRE-----------AGLEDRVEVRLQDYRDLPG---KFDRIVSIEMFEHVGRKNYP 146 (273)
T ss_dssp HH----EEEEEES-HHHHHHHHHHHHC-----------STSSSTEEEEES-GGG------S-SEEEEESEGGGTCGGGHH
T ss_pred HcC--cEEEEEECCHHHHHHHHHHHHh-----------cCCCCceEEEEeeccccCC---CCCEEEEEechhhcChhHHH
Confidence 832 8999999999999999988753 2334578999999987764 99999999999999877777
Q ss_pred HHHHHHHHccCCC-EEEEE
Q 002218 814 QFGNIVLSSFRPR-ILIVS 831 (952)
Q Consensus 814 ~L~eeI~RvLKPG-~LIIS 831 (952)
.|.+.+.++|||| .+++.
T Consensus 147 ~~f~~~~~~LkpgG~~~lq 165 (273)
T PF02353_consen 147 AFFRKISRLLKPGGRLVLQ 165 (273)
T ss_dssp HHHHHHHHHSETTEEEEEE
T ss_pred HHHHHHHHhcCCCcEEEEE
Confidence 7788999999999 66543
No 20
>PRK10258 biotin biosynthesis protein BioC; Provisional
Probab=99.48 E-value=9e-13 Score=138.41 Aligned_cols=119 Identities=17% Similarity=0.243 Sum_probs=95.3
Q ss_pred hHHHHHHHHHHHhhcCCCCEEEEEcCccchHHHHHhcCCCCCceEEEEeCChHHHHHHHHHHhhhhhcccccCCCCCCCc
Q 002218 697 LSKQRVEYALQHIKESCATTLVDFGCGSGSLLDSLLDYPTALEKIVGVDISQKSLSRAAKIIHSKLSKKLDAAVPCTDVK 776 (952)
Q Consensus 697 L~~QR~efVldlL~~~k~krVLDIGCGeG~ll~~LAr~g~~~~qVVGVDISeemLe~ArkrLsa~la~~~~~l~Pr~~~~ 776 (952)
+.....+.+.+.+...+..+|||+|||+|.++..+++.+ .+|+|+|+|+.|++.|+++..
T Consensus 26 ~q~~~a~~l~~~l~~~~~~~vLDiGcG~G~~~~~l~~~~---~~v~~~D~s~~~l~~a~~~~~----------------- 85 (251)
T PRK10258 26 LQRQSADALLAMLPQRKFTHVLDAGCGPGWMSRYWRERG---SQVTALDLSPPMLAQARQKDA----------------- 85 (251)
T ss_pred HHHHHHHHHHHhcCccCCCeEEEeeCCCCHHHHHHHHcC---CeEEEEECCHHHHHHHHhhCC-----------------
Confidence 344444455666655567899999999999999998876 799999999999999976521
Q ss_pred cEEEEEcCccccCCCCCCccEEEEccccccCChhHHHHHHHHHHHccCCC-EEEEEecCCch
Q 002218 777 SAVLFDGSITVFDSRLHGFDIGTCLEVIEHMEEDEASQFGNIVLSSFRPR-ILIVSTPNYEY 837 (952)
Q Consensus 777 nVtf~qGDa~dLpf~d~sFDVVVcieVIEHL~dD~l~~L~eeI~RvLKPG-~LIISTPN~ef 837 (952)
.+.+.++|+.++++.+++||+|++..+++|++ +....+ .++.++|+|| .++++++....
T Consensus 86 ~~~~~~~d~~~~~~~~~~fD~V~s~~~l~~~~-d~~~~l-~~~~~~Lk~gG~l~~~~~~~~~ 145 (251)
T PRK10258 86 ADHYLAGDIESLPLATATFDLAWSNLAVQWCG-NLSTAL-RELYRVVRPGGVVAFTTLVQGS 145 (251)
T ss_pred CCCEEEcCcccCcCCCCcEEEEEECchhhhcC-CHHHHH-HHHHHHcCCCeEEEEEeCCCCc
Confidence 34678999999988888999999999999988 444454 5799999998 88888887543
No 21
>PRK11207 tellurite resistance protein TehB; Provisional
Probab=99.48 E-value=3.4e-13 Score=138.18 Aligned_cols=110 Identities=14% Similarity=0.147 Sum_probs=90.7
Q ss_pred HHHHhhcCCCCEEEEEcCccchHHHHHhcCCCCCceEEEEeCChHHHHHHHHHHhhhhhcccccCCCCCCCccEEEEEcC
Q 002218 705 ALQHIKESCATTLVDFGCGSGSLLDSLLDYPTALEKIVGVDISQKSLSRAAKIIHSKLSKKLDAAVPCTDVKSAVLFDGS 784 (952)
Q Consensus 705 VldlL~~~k~krVLDIGCGeG~ll~~LAr~g~~~~qVVGVDISeemLe~ArkrLsa~la~~~~~l~Pr~~~~nVtf~qGD 784 (952)
+.+.+...++.+|||+|||+|.++..|++.+ .+|+|+|+|+.|++.++++... .+..++++..+|
T Consensus 22 l~~~l~~~~~~~vLDiGcG~G~~a~~La~~g---~~V~gvD~S~~~i~~a~~~~~~------------~~~~~v~~~~~d 86 (197)
T PRK11207 22 VLEAVKVVKPGKTLDLGCGNGRNSLYLAANG---FDVTAWDKNPMSIANLERIKAA------------ENLDNLHTAVVD 86 (197)
T ss_pred HHHhcccCCCCcEEEECCCCCHHHHHHHHCC---CEEEEEeCCHHHHHHHHHHHHH------------cCCCcceEEecC
Confidence 3445555567899999999999999999987 7999999999999999876542 233468899999
Q ss_pred ccccCCCCCCccEEEEccccccCChhHHHHHHHHHHHccCCC-EEEE
Q 002218 785 ITVFDSRLHGFDIGTCLEVIEHMEEDEASQFGNIVLSSFRPR-ILIV 830 (952)
Q Consensus 785 a~dLpf~d~sFDVVVcieVIEHL~dD~l~~L~eeI~RvLKPG-~LII 830 (952)
+.++++. ..||+|+|..+++|++++....+.+++.++|+|| .+++
T Consensus 87 ~~~~~~~-~~fD~I~~~~~~~~~~~~~~~~~l~~i~~~LkpgG~~~~ 132 (197)
T PRK11207 87 LNNLTFD-GEYDFILSTVVLMFLEAKTIPGLIANMQRCTKPGGYNLI 132 (197)
T ss_pred hhhCCcC-CCcCEEEEecchhhCCHHHHHHHHHHHHHHcCCCcEEEE
Confidence 9887664 5799999999999998777778888999999999 5333
No 22
>PF13847 Methyltransf_31: Methyltransferase domain; PDB: 3T0I_B 3SVZ_B 3SXJ_A 3F4K_A 3GU3_B 2GH1_A 1R8Y_E 1R8X_B 2B3T_A 1T43_A ....
Probab=99.47 E-value=3.9e-13 Score=131.06 Aligned_cols=106 Identities=30% Similarity=0.492 Sum_probs=86.9
Q ss_pred CCCEEEEEcCccchHHHHHh-cCCCCCceEEEEeCChHHHHHHHHHHhhhhhcccccCCCCCCCccEEEEEcCccccC--
Q 002218 713 CATTLVDFGCGSGSLLDSLL-DYPTALEKIVGVDISQKSLSRAAKIIHSKLSKKLDAAVPCTDVKSAVLFDGSITVFD-- 789 (952)
Q Consensus 713 k~krVLDIGCGeG~ll~~LA-r~g~~~~qVVGVDISeemLe~ArkrLsa~la~~~~~l~Pr~~~~nVtf~qGDa~dLp-- 789 (952)
++.+|||+|||+|.++..|+ +.+ +..+++|||+|++|++.|++++.. .+..++++.++|+.+++
T Consensus 3 ~~~~iLDlGcG~G~~~~~l~~~~~-~~~~i~gvD~s~~~i~~a~~~~~~------------~~~~ni~~~~~d~~~l~~~ 69 (152)
T PF13847_consen 3 SNKKILDLGCGTGRLLIQLAKELN-PGAKIIGVDISEEMIEYAKKRAKE------------LGLDNIEFIQGDIEDLPQE 69 (152)
T ss_dssp TTSEEEEET-TTSHHHHHHHHHST-TTSEEEEEESSHHHHHHHHHHHHH------------TTSTTEEEEESBTTCGCGC
T ss_pred CCCEEEEecCcCcHHHHHHHHhcC-CCCEEEEEECcHHHHHHhhccccc------------ccccccceEEeehhccccc
Confidence 56899999999999999999 443 348899999999999999987642 24458999999999976
Q ss_pred CCCCCccEEEEccccccCChhHHHHHHHHHHHccCCC-EEEEEecC
Q 002218 790 SRLHGFDIGTCLEVIEHMEEDEASQFGNIVLSSFRPR-ILIVSTPN 834 (952)
Q Consensus 790 f~d~sFDVVVcieVIEHL~dD~l~~L~eeI~RvLKPG-~LIISTPN 834 (952)
+. ..||+|++..+++|+. +.... .+++.++|+++ .+++..++
T Consensus 70 ~~-~~~D~I~~~~~l~~~~-~~~~~-l~~~~~~lk~~G~~i~~~~~ 112 (152)
T PF13847_consen 70 LE-EKFDIIISNGVLHHFP-DPEKV-LKNIIRLLKPGGILIISDPN 112 (152)
T ss_dssp SS-TTEEEEEEESTGGGTS-HHHHH-HHHHHHHEEEEEEEEEEEEE
T ss_pred cC-CCeeEEEEcCchhhcc-CHHHH-HHHHHHHcCCCcEEEEEECC
Confidence 44 7999999999999998 44344 45799999998 77777776
No 23
>COG2230 Cfa Cyclopropane fatty acid synthase and related methyltransferases [Cell envelope biogenesis, outer membrane]
Probab=99.46 E-value=6e-13 Score=144.35 Aligned_cols=159 Identities=20% Similarity=0.252 Sum_probs=123.7
Q ss_pred hccccccceecccCCchhhhhhhccCcccchhcccccccccceeeeecccCC-ChhhhhhhhcCCchhHHHHHHHHHHHh
Q 002218 631 QMSVGQSACFCKELPPQELILAAADDSARTFSLLSSRACCLEYHITLLRVTE-PPEDRMEQALFSPPLSKQRVEYALQHI 709 (952)
Q Consensus 631 q~sv~q~~~~~~~l~~~~l~lAa~~~~~~DiSlLs~d~~~LEyyI~LL~v~e-p~EeRye~~~F~PPL~~QR~efVldlL 709 (952)
-+|.++...++..+ .+.+.|+-.|-.+.- +.|+.......+ ..++ -....++.+.+.+
T Consensus 10 ~~~~~~~~~~i~~H----------YDl~n~fy~l~Ld~~-~~Yscayf~~~~~tL~e----------AQ~~k~~~~~~kl 68 (283)
T COG2230 10 RHSKRRAAENIQAH----------YDLSNDFYRLFLDPS-MTYSCAYFEDPDMTLEE----------AQRAKLDLILEKL 68 (283)
T ss_pred cccccchhhhhhhH----------hhcchHHHHHhcCCC-CceeeEEeCCCCCChHH----------HHHHHHHHHHHhc
Confidence 34555666666555 666667777777777 778777765443 2221 2234556788888
Q ss_pred hcCCCCEEEEEcCccchHHHHHhcCCCCCceEEEEeCChHHHHHHHHHHhhhhhcccccCCCCCCCccEEEEEcCccccC
Q 002218 710 KESCATTLVDFGCGSGSLLDSLLDYPTALEKIVGVDISQKSLSRAAKIIHSKLSKKLDAAVPCTDVKSAVLFDGSITVFD 789 (952)
Q Consensus 710 ~~~k~krVLDIGCGeG~ll~~LAr~g~~~~qVVGVDISeemLe~ArkrLsa~la~~~~~l~Pr~~~~nVtf~qGDa~dLp 789 (952)
...++++|||||||.|.++.++|+..+ .+|+||++|+++.+.+++++.+ ++...++++...|..++.
T Consensus 69 ~L~~G~~lLDiGCGWG~l~~~aA~~y~--v~V~GvTlS~~Q~~~~~~r~~~-----------~gl~~~v~v~l~d~rd~~ 135 (283)
T COG2230 69 GLKPGMTLLDIGCGWGGLAIYAAEEYG--VTVVGVTLSEEQLAYAEKRIAA-----------RGLEDNVEVRLQDYRDFE 135 (283)
T ss_pred CCCCCCEEEEeCCChhHHHHHHHHHcC--CEEEEeeCCHHHHHHHHHHHHH-----------cCCCcccEEEeccccccc
Confidence 888999999999999999999998853 8999999999999999998753 122348999888888775
Q ss_pred CCCCCccEEEEccccccCChhHHHHHHHHHHHccCCC
Q 002218 790 SRLHGFDIGTCLEVIEHMEEDEASQFGNIVLSSFRPR 826 (952)
Q Consensus 790 f~d~sFDVVVcieVIEHL~dD~l~~L~eeI~RvLKPG 826 (952)
. .||.||+++++||+..+....|.+.+.++|+||
T Consensus 136 e---~fDrIvSvgmfEhvg~~~~~~ff~~~~~~L~~~ 169 (283)
T COG2230 136 E---PFDRIVSVGMFEHVGKENYDDFFKKVYALLKPG 169 (283)
T ss_pred c---ccceeeehhhHHHhCcccHHHHHHHHHhhcCCC
Confidence 4 399999999999999887888889999999998
No 24
>PRK15068 tRNA mo(5)U34 methyltransferase; Provisional
Probab=99.45 E-value=1e-12 Score=144.80 Aligned_cols=116 Identities=23% Similarity=0.323 Sum_probs=91.5
Q ss_pred HHHHHHHhhcCCCCEEEEEcCccchHHHHHhcCCCCCceEEEEeCChHHHHHHHHHHhhhhhcccccCCCCCCCccEEEE
Q 002218 702 VEYALQHIKESCATTLVDFGCGSGSLLDSLLDYPTALEKIVGVDISQKSLSRAAKIIHSKLSKKLDAAVPCTDVKSAVLF 781 (952)
Q Consensus 702 ~efVldlL~~~k~krVLDIGCGeG~ll~~LAr~g~~~~qVVGVDISeemLe~ArkrLsa~la~~~~~l~Pr~~~~nVtf~ 781 (952)
++.+...+....+++|||||||+|.++..+++.+. ..|+|||+|+.++..++..... . ....++.+.
T Consensus 111 ~~~l~~~l~~l~g~~VLDIGCG~G~~~~~la~~g~--~~V~GiD~S~~~l~q~~a~~~~-~----------~~~~~i~~~ 177 (322)
T PRK15068 111 WDRVLPHLSPLKGRTVLDVGCGNGYHMWRMLGAGA--KLVVGIDPSQLFLCQFEAVRKL-L----------GNDQRAHLL 177 (322)
T ss_pred HHHHHHhhCCCCCCEEEEeccCCcHHHHHHHHcCC--CEEEEEcCCHHHHHHHHHHHHh-c----------CCCCCeEEE
Confidence 44556666666789999999999999999998873 5799999999999766432110 0 112479999
Q ss_pred EcCccccCCCCCCccEEEEccccccCChhHHHHHHHHHHHccCCC-EEEEEec
Q 002218 782 DGSITVFDSRLHGFDIGTCLEVIEHMEEDEASQFGNIVLSSFRPR-ILIVSTP 833 (952)
Q Consensus 782 qGDa~dLpf~d~sFDVVVcieVIEHL~dD~l~~L~eeI~RvLKPG-~LIISTP 833 (952)
.+++.++++ .+.||+|+|.++++|+. ++...+ +++++.|+|| .+++.+.
T Consensus 178 ~~d~e~lp~-~~~FD~V~s~~vl~H~~-dp~~~L-~~l~~~LkpGG~lvl~~~ 227 (322)
T PRK15068 178 PLGIEQLPA-LKAFDTVFSMGVLYHRR-SPLDHL-KQLKDQLVPGGELVLETL 227 (322)
T ss_pred eCCHHHCCC-cCCcCEEEECChhhccC-CHHHHH-HHHHHhcCCCcEEEEEEE
Confidence 999999987 78899999999999998 554554 5799999999 7777754
No 25
>PRK15451 tRNA cmo(5)U34 methyltransferase; Provisional
Probab=99.44 E-value=1.3e-12 Score=138.13 Aligned_cols=124 Identities=16% Similarity=0.187 Sum_probs=94.1
Q ss_pred hhHHHHHHHHHHHhh--cCCCCEEEEEcCccchHHHHHhcCC-CCCceEEEEeCChHHHHHHHHHHhhhhhcccccCCCC
Q 002218 696 PLSKQRVEYALQHIK--ESCATTLVDFGCGSGSLLDSLLDYP-TALEKIVGVDISQKSLSRAAKIIHSKLSKKLDAAVPC 772 (952)
Q Consensus 696 PL~~QR~efVldlL~--~~k~krVLDIGCGeG~ll~~LAr~g-~~~~qVVGVDISeemLe~ArkrLsa~la~~~~~l~Pr 772 (952)
|.|..-+..+..++. ..++.+|||||||+|.++..+++.. .+..+++|+|+|+.|++.|++++...
T Consensus 37 p~y~~~~~~~~~~~~~~~~~~~~vLDlGcGtG~~~~~l~~~~~~~~~~v~gvD~S~~ml~~A~~~~~~~----------- 105 (247)
T PRK15451 37 PGYSNIISMIGMLAERFVQPGTQVYDLGCSLGAATLSVRRNIHHDNCKIIAIDNSPAMIERCRRHIDAY----------- 105 (247)
T ss_pred CChHHHHHHHHHHHHHhCCCCCEEEEEcccCCHHHHHHHHhcCCCCCeEEEEeCCHHHHHHHHHHHHhc-----------
Confidence 444444444433332 2356899999999999998887621 13479999999999999999886421
Q ss_pred CCCccEEEEEcCccccCCCCCCccEEEEccccccCChhHHHHHHHHHHHccCCC-EEEEEe
Q 002218 773 TDVKSAVLFDGSITVFDSRLHGFDIGTCLEVIEHMEEDEASQFGNIVLSSFRPR-ILIVST 832 (952)
Q Consensus 773 ~~~~nVtf~qGDa~dLpf~d~sFDVVVcieVIEHL~dD~l~~L~eeI~RvLKPG-~LIIST 832 (952)
....++++.++|+.++++. .+|+|++..+++|++++....+.+++.++|||| .++++.
T Consensus 106 ~~~~~v~~~~~d~~~~~~~--~~D~vv~~~~l~~l~~~~~~~~l~~i~~~LkpGG~l~l~e 164 (247)
T PRK15451 106 KAPTPVDVIEGDIRDIAIE--NASMVVLNFTLQFLEPSERQALLDKIYQGLNPGGALVLSE 164 (247)
T ss_pred CCCCCeEEEeCChhhCCCC--CCCEEehhhHHHhCCHHHHHHHHHHHHHhcCCCCEEEEEE
Confidence 1223799999999888753 599999999999999777677778899999999 777765
No 26
>TIGR02752 MenG_heptapren 2-heptaprenyl-1,4-naphthoquinone methyltransferase. MenG is a generic term for a methyltransferase that catalyzes the last step in menaquinone biosynthesis; the exact enzymatic activity differs for different MenG because the menaquinone differ in their prenoid side chains in different species. Members of this MenG protein family are 2-heptaprenyl-1,4-naphthoquinone methyltransferase, and are found together in operons with the two subunits of the heptaprenyl diphosphate synthase in Bacillus subtilis and related species.
Probab=99.44 E-value=1.8e-12 Score=133.94 Aligned_cols=117 Identities=14% Similarity=0.200 Sum_probs=93.8
Q ss_pred HHHHHHhhcCCCCEEEEEcCccchHHHHHhcCCCCCceEEEEeCChHHHHHHHHHHhhhhhcccccCCCCCCCccEEEEE
Q 002218 703 EYALQHIKESCATTLVDFGCGSGSLLDSLLDYPTALEKIVGVDISQKSLSRAAKIIHSKLSKKLDAAVPCTDVKSAVLFD 782 (952)
Q Consensus 703 efVldlL~~~k~krVLDIGCGeG~ll~~LAr~g~~~~qVVGVDISeemLe~ArkrLsa~la~~~~~l~Pr~~~~nVtf~q 782 (952)
+.+++.+...++.+|||+|||+|.++..+++..++..+|+|+|+++.+++.|++++.. .+..++++++
T Consensus 35 ~~~l~~l~~~~~~~vLDiGcG~G~~~~~la~~~~~~~~v~gvD~s~~~~~~a~~~~~~------------~~~~~v~~~~ 102 (231)
T TIGR02752 35 KDTMKRMNVQAGTSALDVCCGTADWSIALAEAVGPEGHVIGLDFSENMLSVGRQKVKD------------AGLHNVELVH 102 (231)
T ss_pred HHHHHhcCCCCCCEEEEeCCCcCHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHh------------cCCCceEEEE
Confidence 4555666666778999999999999999987643447999999999999999887642 2345799999
Q ss_pred cCccccCCCCCCccEEEEccccccCChhHHHHHHHHHHHccCCC-EEEEEec
Q 002218 783 GSITVFDSRLHGFDIGTCLEVIEHMEEDEASQFGNIVLSSFRPR-ILIVSTP 833 (952)
Q Consensus 783 GDa~dLpf~d~sFDVVVcieVIEHL~dD~l~~L~eeI~RvLKPG-~LIISTP 833 (952)
+|+.++++..++||+|++..+++|+++ .... .+++.++|+|| .+++..+
T Consensus 103 ~d~~~~~~~~~~fD~V~~~~~l~~~~~-~~~~-l~~~~~~Lk~gG~l~~~~~ 152 (231)
T TIGR02752 103 GNAMELPFDDNSFDYVTIGFGLRNVPD-YMQV-LREMYRVVKPGGKVVCLET 152 (231)
T ss_pred echhcCCCCCCCccEEEEecccccCCC-HHHH-HHHHHHHcCcCeEEEEEEC
Confidence 999998887889999999999999984 4344 45799999999 5655443
No 27
>PRK07580 Mg-protoporphyrin IX methyl transferase; Validated
Probab=99.43 E-value=7.1e-12 Score=128.82 Aligned_cols=159 Identities=21% Similarity=0.239 Sum_probs=106.0
Q ss_pred HHHHHHhhc---CCCCEEEEEcCccchHHHHHhcCCCCCceEEEEeCChHHHHHHHHHHhhhhhcccccCCCCCCCccEE
Q 002218 703 EYALQHIKE---SCATTLVDFGCGSGSLLDSLLDYPTALEKIVGVDISQKSLSRAAKIIHSKLSKKLDAAVPCTDVKSAV 779 (952)
Q Consensus 703 efVldlL~~---~k~krVLDIGCGeG~ll~~LAr~g~~~~qVVGVDISeemLe~ArkrLsa~la~~~~~l~Pr~~~~nVt 779 (952)
+.+.+.+.. .++.+|||||||+|.++..|++.+ ..|+|+|+|+.|++.|+++.... ....++.
T Consensus 50 ~~~~~~l~~~~~~~~~~vLDvGcG~G~~~~~l~~~~---~~v~~~D~s~~~i~~a~~~~~~~-----------~~~~~i~ 115 (230)
T PRK07580 50 DTVLSWLPADGDLTGLRILDAGCGVGSLSIPLARRG---AKVVASDISPQMVEEARERAPEA-----------GLAGNIT 115 (230)
T ss_pred HHHHHHHHhcCCCCCCEEEEEeCCCCHHHHHHHHcC---CEEEEEECCHHHHHHHHHHHHhc-----------CCccCcE
Confidence 344454443 456799999999999999999887 57999999999999998876421 1114789
Q ss_pred EEEcCccccCCCCCCccEEEEccccccCChhHHHHHHHHHHHccCCCEEEEEecCCchhHHHHhhccCccCCCCcchhhh
Q 002218 780 LFDGSITVFDSRLHGFDIGTCLEVIEHMEEDEASQFGNIVLSSFRPRILIVSTPNYEYNAILQKSSSTIQEDDPDEKTQL 859 (952)
Q Consensus 780 f~qGDa~dLpf~d~sFDVVVcieVIEHL~dD~l~~L~eeI~RvLKPG~LIISTPN~efN~lf~~L~~~ta~eYPde~~g~ 859 (952)
+.++|+. ..++.||+|++..+++|++++....+.+.+.+.++++.++...+.......+..+.. .++
T Consensus 116 ~~~~d~~---~~~~~fD~v~~~~~l~~~~~~~~~~~l~~l~~~~~~~~~i~~~~~~~~~~~~~~l~~----~~~------ 182 (230)
T PRK07580 116 FEVGDLE---SLLGRFDTVVCLDVLIHYPQEDAARMLAHLASLTRGSLIFTFAPYTPLLALLHWIGG----LFP------ 182 (230)
T ss_pred EEEcCch---hccCCcCEEEEcchhhcCCHHHHHHHHHHHHhhcCCeEEEEECCccHHHHHHHHhcc----ccC------
Confidence 9999843 345789999999999999877766666778887765555444443222222222210 111
Q ss_pred ccccccCCCCccccCHHHHHHHHHHHHHHcCcEEEE
Q 002218 860 QSCKFRNHDHKFEWTRDQFNCWATELAARHNYSVEF 895 (952)
Q Consensus 860 ~~~~fRh~DHkFEWTReEFqsWae~La~q~GYsVef 895 (952)
......+....+..++.+ ++...||.+.-
T Consensus 183 ---~~~~~~~~~~~~~~~~~~----~l~~~Gf~~~~ 211 (230)
T PRK07580 183 ---GPSRTTRIYPHREKGIRR----ALAAAGFKVVR 211 (230)
T ss_pred ---CccCCCCccccCHHHHHH----HHHHCCCceEe
Confidence 111122233467888884 56678998754
No 28
>PRK06202 hypothetical protein; Provisional
Probab=99.42 E-value=2.9e-12 Score=133.42 Aligned_cols=107 Identities=17% Similarity=0.223 Sum_probs=82.9
Q ss_pred CCCCEEEEEcCccchHHHHHhcC----CCCCceEEEEeCChHHHHHHHHHHhhhhhcccccCCCCCCCccEEEEEcCccc
Q 002218 712 SCATTLVDFGCGSGSLLDSLLDY----PTALEKIVGVDISQKSLSRAAKIIHSKLSKKLDAAVPCTDVKSAVLFDGSITV 787 (952)
Q Consensus 712 ~k~krVLDIGCGeG~ll~~LAr~----g~~~~qVVGVDISeemLe~ArkrLsa~la~~~~~l~Pr~~~~nVtf~qGDa~d 787 (952)
.++.+|||||||+|.++..|++. + +..+|+|+|+|++|++.|+++.. ..++++..+++..
T Consensus 59 ~~~~~iLDlGcG~G~~~~~L~~~~~~~g-~~~~v~gvD~s~~~l~~a~~~~~---------------~~~~~~~~~~~~~ 122 (232)
T PRK06202 59 DRPLTLLDIGCGGGDLAIDLARWARRDG-LRLEVTAIDPDPRAVAFARANPR---------------RPGVTFRQAVSDE 122 (232)
T ss_pred CCCcEEEEeccCCCHHHHHHHHHHHhCC-CCcEEEEEcCCHHHHHHHHhccc---------------cCCCeEEEEeccc
Confidence 46679999999999998888742 3 23689999999999999976531 1246666777766
Q ss_pred cCCCCCCccEEEEccccccCChhHHHHHHHHHHHccCCCEEEEEecCC
Q 002218 788 FDSRLHGFDIGTCLEVIEHMEEDEASQFGNIVLSSFRPRILIVSTPNY 835 (952)
Q Consensus 788 Lpf~d~sFDVVVcieVIEHL~dD~l~~L~eeI~RvLKPG~LIISTPN~ 835 (952)
++..+++||+|+|..++||+++++...+.+++.++++ +.+++.....
T Consensus 123 l~~~~~~fD~V~~~~~lhh~~d~~~~~~l~~~~r~~~-~~~~i~dl~~ 169 (232)
T PRK06202 123 LVAEGERFDVVTSNHFLHHLDDAEVVRLLADSAALAR-RLVLHNDLIR 169 (232)
T ss_pred ccccCCCccEEEECCeeecCChHHHHHHHHHHHHhcC-eeEEEecccc
Confidence 7666789999999999999997666667778999998 5555555543
No 29
>PF13649 Methyltransf_25: Methyltransferase domain; PDB: 3BXO_B 3GGD_A 3PX2_A 3PX3_A 3PFH_D 3PFG_A 1Y8C_A.
Probab=99.42 E-value=3e-13 Score=123.29 Aligned_cols=97 Identities=22% Similarity=0.366 Sum_probs=79.6
Q ss_pred EEEEcCccchHHHHHhcCC--CCCceEEEEeCChHHHHHHHHHHhhhhhcccccCCCCCCCccEEEEEcCccccCCCCCC
Q 002218 717 LVDFGCGSGSLLDSLLDYP--TALEKIVGVDISQKSLSRAAKIIHSKLSKKLDAAVPCTDVKSAVLFDGSITVFDSRLHG 794 (952)
Q Consensus 717 VLDIGCGeG~ll~~LAr~g--~~~~qVVGVDISeemLe~ArkrLsa~la~~~~~l~Pr~~~~nVtf~qGDa~dLpf~d~s 794 (952)
|||+|||+|..+..+++.. ++..+++|+|+|++||+.++++... .+ .+++++++|+.++++.++.
T Consensus 1 ILDlgcG~G~~~~~l~~~~~~~~~~~~~gvD~s~~~l~~~~~~~~~------------~~-~~~~~~~~D~~~l~~~~~~ 67 (101)
T PF13649_consen 1 ILDLGCGTGRVTRALARRFDAGPSSRVIGVDISPEMLELAKKRFSE------------DG-PKVRFVQADARDLPFSDGK 67 (101)
T ss_dssp -EEET-TTSHHHHHHHHHS-----SEEEEEES-HHHHHHHHHHSHH------------TT-TTSEEEESCTTCHHHHSSS
T ss_pred CEEeecCCcHHHHHHHHHhhhcccceEEEEECCHHHHHHHHHhchh------------cC-CceEEEECCHhHCcccCCC
Confidence 7999999999999998764 1237999999999999999887542 12 2889999999999988889
Q ss_pred ccEEEEc-cccccCChhHHHHHHHHHHHccCCC
Q 002218 795 FDIGTCL-EVIEHMEEDEASQFGNIVLSSFRPR 826 (952)
Q Consensus 795 FDVVVci-eVIEHL~dD~l~~L~eeI~RvLKPG 826 (952)
||+|+|. .+++|+.+++...+.+.+.++|+||
T Consensus 68 ~D~v~~~~~~~~~~~~~~~~~ll~~~~~~l~pg 100 (101)
T PF13649_consen 68 FDLVVCSGLSLHHLSPEELEALLRRIARLLRPG 100 (101)
T ss_dssp EEEEEE-TTGGGGSSHHHHHHHHHHHHHTEEEE
T ss_pred eeEEEEcCCccCCCCHHHHHHHHHHHHHHhCCC
Confidence 9999995 5599999999899999999999996
No 30
>PF07021 MetW: Methionine biosynthesis protein MetW; InterPro: IPR010743 This family consists of several bacterial and one archaeal methionine biosynthesis MetW proteins. Biosynthesis of methionine from homoserine in Pseudomonas putida takes place in three steps. The first step is the acylation of homoserine to yield an acyl-L-homoserine. This reaction is catalysed by the products of the metXW genes and is equivalent to the first step in enterobacteria, Gram-positive bacteria and fungi, except that in these microorganisms the reaction is catalysed by a single polypeptide (the product of the metA gene in Escherichia coli and the met5 gene product in Neurospora crassa). In P. putida, as in Gram-positive bacteria and certain fungi, the second and third steps are a direct sulphydrylation that converts the O-acyl-L-homoserine into homocysteine and further methylation to yield methionine. The latter reaction can be mediated by either of the two methionine synthetases present in the cells [].
Probab=99.42 E-value=2.6e-12 Score=132.54 Aligned_cols=152 Identities=20% Similarity=0.244 Sum_probs=108.6
Q ss_pred HHHHHHhhcCCCCEEEEEcCccchHHHHHhcCCCCCceEEEEeCChHHHHHHHHHHhhhhhcccccCCCCCCCccEEEEE
Q 002218 703 EYALQHIKESCATTLVDFGCGSGSLLDSLLDYPTALEKIVGVDISQKSLSRAAKIIHSKLSKKLDAAVPCTDVKSAVLFD 782 (952)
Q Consensus 703 efVldlL~~~k~krVLDIGCGeG~ll~~LAr~g~~~~qVVGVDISeemLe~ArkrLsa~la~~~~~l~Pr~~~~nVtf~q 782 (952)
+.+.+.+. ++.+|||+|||.|.++..|.+.. ..+..|||++++.+..+.++ .+.+++
T Consensus 5 ~~I~~~I~--pgsrVLDLGCGdG~LL~~L~~~k--~v~g~GvEid~~~v~~cv~r-------------------Gv~Viq 61 (193)
T PF07021_consen 5 QIIAEWIE--PGSRVLDLGCGDGELLAYLKDEK--QVDGYGVEIDPDNVAACVAR-------------------GVSVIQ 61 (193)
T ss_pred HHHHHHcC--CCCEEEecCCCchHHHHHHHHhc--CCeEEEEecCHHHHHHHHHc-------------------CCCEEE
Confidence 34556555 57999999999999999998854 38899999999999988653 467899
Q ss_pred cCccc-c-CCCCCCccEEEEccccccCChhHHHHHHHHHHHccCCC-EEEEEecCCchhH-HHHhhccCcc---CCCCcc
Q 002218 783 GSITV-F-DSRLHGFDIGTCLEVIEHMEEDEASQFGNIVLSSFRPR-ILIVSTPNYEYNA-ILQKSSSTIQ---EDDPDE 855 (952)
Q Consensus 783 GDa~d-L-pf~d~sFDVVVcieVIEHL~dD~l~~L~eeI~RvLKPG-~LIISTPN~efN~-lf~~L~~~ta---~eYPde 855 (952)
+|+.+ + .+++++||.|+++.+|+|+.. +...+ ++|.|+ | ..||+.||+.|.. .+..+..++. ..+|+
T Consensus 62 ~Dld~gL~~f~d~sFD~VIlsqtLQ~~~~-P~~vL-~EmlRV---gr~~IVsFPNFg~W~~R~~l~~~GrmPvt~~lPy- 135 (193)
T PF07021_consen 62 GDLDEGLADFPDQSFDYVILSQTLQAVRR-PDEVL-EEMLRV---GRRAIVSFPNFGHWRNRLQLLLRGRMPVTKALPY- 135 (193)
T ss_pred CCHHHhHhhCCCCCccEEehHhHHHhHhH-HHHHH-HHHHHh---cCeEEEEecChHHHHHHHHHHhcCCCCCCCCCCC-
Confidence 99976 3 478999999999999999984 43443 456555 6 7999999987654 3333312121 12322
Q ss_pred hhhhccccccCCCCccccCHHHHHHHHHHHHHHcCcEEE
Q 002218 856 KTQLQSCKFRNHDHKFEWTRDQFNCWATELAARHNYSVE 894 (952)
Q Consensus 856 ~~g~~~~~fRh~DHkFEWTReEFqsWae~La~q~GYsVe 894 (952)
.| +.++ +....|-.+|.. ++++.|+.|+
T Consensus 136 ----~W--YdTP-Nih~~Ti~DFe~----lc~~~~i~I~ 163 (193)
T PF07021_consen 136 ----EW--YDTP-NIHLCTIKDFED----LCRELGIRIE 163 (193)
T ss_pred ----cc--cCCC-CcccccHHHHHH----HHHHCCCEEE
Confidence 23 2222 334589999995 5666799885
No 31
>TIGR00477 tehB tellurite resistance protein TehB. Part of a tellurite-reducing operon tehA and tehB
Probab=99.40 E-value=2.4e-12 Score=131.72 Aligned_cols=110 Identities=13% Similarity=0.112 Sum_probs=88.5
Q ss_pred HHHHHhhcCCCCEEEEEcCccchHHHHHhcCCCCCceEEEEeCChHHHHHHHHHHhhhhhcccccCCCCCCCccEEEEEc
Q 002218 704 YALQHIKESCATTLVDFGCGSGSLLDSLLDYPTALEKIVGVDISQKSLSRAAKIIHSKLSKKLDAAVPCTDVKSAVLFDG 783 (952)
Q Consensus 704 fVldlL~~~k~krVLDIGCGeG~ll~~LAr~g~~~~qVVGVDISeemLe~ArkrLsa~la~~~~~l~Pr~~~~nVtf~qG 783 (952)
.+.+.+...++.+|||+|||+|.++..|++.+ .+|+|+|+|+.|++.++++... .+. ++.+..+
T Consensus 21 ~l~~~~~~~~~~~vLDiGcG~G~~a~~la~~g---~~V~~iD~s~~~l~~a~~~~~~------------~~~-~v~~~~~ 84 (195)
T TIGR00477 21 AVREAVKTVAPCKTLDLGCGQGRNSLYLSLAG---YDVRAWDHNPASIASVLDMKAR------------ENL-PLRTDAY 84 (195)
T ss_pred HHHHHhccCCCCcEEEeCCCCCHHHHHHHHCC---CeEEEEECCHHHHHHHHHHHHH------------hCC-CceeEec
Confidence 45555666667899999999999999999987 7999999999999999876532 122 4777788
Q ss_pred CccccCCCCCCccEEEEccccccCChhHHHHHHHHHHHccCCC-EEEE
Q 002218 784 SITVFDSRLHGFDIGTCLEVIEHMEEDEASQFGNIVLSSFRPR-ILIV 830 (952)
Q Consensus 784 Da~dLpf~d~sFDVVVcieVIEHL~dD~l~~L~eeI~RvLKPG-~LII 830 (952)
|+...++. .+||+|++..+++|++.+....+.+++.++|||| .+++
T Consensus 85 d~~~~~~~-~~fD~I~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~lli 131 (195)
T TIGR00477 85 DINAAALN-EDYDFIFSTVVFMFLQAGRVPEIIANMQAHTRPGGYNLI 131 (195)
T ss_pred cchhcccc-CCCCEEEEecccccCCHHHHHHHHHHHHHHhCCCcEEEE
Confidence 87666543 5799999999999998777777778899999999 5344
No 32
>TIGR00740 methyltransferase, putative. A simple BLAST search finds all members of this family and weaker hits to a large number of known and predicted methyltransferases. A single iteration with PSI-BLAST, keeping only clear members of the family, leads to a large number of highly significant hits to a set of known and predicted methyltransferases with a large repertoire of different specifities. This model is restricted to a subfamily found so far only in the Proteobacteria, sharing consistent length, full-length homology, and on average better than 35 % identity. It is reasonable to predict equivalent function within this subfamily.
Probab=99.40 E-value=3.9e-12 Score=133.09 Aligned_cols=125 Identities=14% Similarity=0.181 Sum_probs=95.3
Q ss_pred hhHHHHHHHHHHHhhc--CCCCEEEEEcCccchHHHHHhcCC-CCCceEEEEeCChHHHHHHHHHHhhhhhcccccCCCC
Q 002218 696 PLSKQRVEYALQHIKE--SCATTLVDFGCGSGSLLDSLLDYP-TALEKIVGVDISQKSLSRAAKIIHSKLSKKLDAAVPC 772 (952)
Q Consensus 696 PL~~QR~efVldlL~~--~k~krVLDIGCGeG~ll~~LAr~g-~~~~qVVGVDISeemLe~ArkrLsa~la~~~~~l~Pr 772 (952)
|.+...+..+..+... .++.+|||+|||+|.++..+++.. .+..+++|+|+|+.|++.|++++...
T Consensus 34 p~y~~~~~~~~~l~~~~~~~~~~iLDlGcG~G~~~~~l~~~~~~p~~~v~gvD~s~~ml~~a~~~~~~~----------- 102 (239)
T TIGR00740 34 PGYSNIITAIGMLAERFVTPDSNVYDLGCSRGAATLSARRNINQPNVKIIGIDNSQPMVERCRQHIAAY----------- 102 (239)
T ss_pred CCHHHHHHHHHHHHHHhCCCCCEEEEecCCCCHHHHHHHHhcCCCCCeEEEEeCCHHHHHHHHHHHHhc-----------
Confidence 3444444444443221 356799999999999999888752 13479999999999999999876431
Q ss_pred CCCccEEEEEcCccccCCCCCCccEEEEccccccCChhHHHHHHHHHHHccCCC-EEEEEec
Q 002218 773 TDVKSAVLFDGSITVFDSRLHGFDIGTCLEVIEHMEEDEASQFGNIVLSSFRPR-ILIVSTP 833 (952)
Q Consensus 773 ~~~~nVtf~qGDa~dLpf~d~sFDVVVcieVIEHL~dD~l~~L~eeI~RvLKPG-~LIISTP 833 (952)
....++++.++|+.++++. .+|+|++..+++|+++++...+.+++.++|+|| .++++.+
T Consensus 103 ~~~~~v~~~~~d~~~~~~~--~~d~v~~~~~l~~~~~~~~~~~l~~i~~~LkpgG~l~i~d~ 162 (239)
T TIGR00740 103 HSEIPVEILCNDIRHVEIK--NASMVILNFTLQFLPPEDRIALLTKIYEGLNPNGVLVLSEK 162 (239)
T ss_pred CCCCCeEEEECChhhCCCC--CCCEEeeecchhhCCHHHHHHHHHHHHHhcCCCeEEEEeec
Confidence 1224789999999988754 589999999999998766677778899999999 7777655
No 33
>PRK12335 tellurite resistance protein TehB; Provisional
Probab=99.40 E-value=4.8e-12 Score=136.70 Aligned_cols=106 Identities=16% Similarity=0.148 Sum_probs=87.8
Q ss_pred cCCCCEEEEEcCccchHHHHHhcCCCCCceEEEEeCChHHHHHHHHHHhhhhhcccccCCCCCCCccEEEEEcCccccCC
Q 002218 711 ESCATTLVDFGCGSGSLLDSLLDYPTALEKIVGVDISQKSLSRAAKIIHSKLSKKLDAAVPCTDVKSAVLFDGSITVFDS 790 (952)
Q Consensus 711 ~~k~krVLDIGCGeG~ll~~LAr~g~~~~qVVGVDISeemLe~ArkrLsa~la~~~~~l~Pr~~~~nVtf~qGDa~dLpf 790 (952)
..++.+|||+|||+|.++..|++.+ .+|+|+|+|+.+++.++++... .+. ++++..+|+...+.
T Consensus 118 ~~~~~~vLDlGcG~G~~~~~la~~g---~~V~avD~s~~ai~~~~~~~~~------------~~l-~v~~~~~D~~~~~~ 181 (287)
T PRK12335 118 TVKPGKALDLGCGQGRNSLYLALLG---FDVTAVDINQQSLENLQEIAEK------------ENL-NIRTGLYDINSASI 181 (287)
T ss_pred ccCCCCEEEeCCCCCHHHHHHHHCC---CEEEEEECCHHHHHHHHHHHHH------------cCC-ceEEEEechhcccc
Confidence 3456799999999999999999987 7999999999999999876542 123 78888888877655
Q ss_pred CCCCccEEEEccccccCChhHHHHHHHHHHHccCCC-EEEEEec
Q 002218 791 RLHGFDIGTCLEVIEHMEEDEASQFGNIVLSSFRPR-ILIVSTP 833 (952)
Q Consensus 791 ~d~sFDVVVcieVIEHL~dD~l~~L~eeI~RvLKPG-~LIISTP 833 (952)
.+.||+|++..+++|++++....+.+++.++|+|| .+++..+
T Consensus 182 -~~~fD~I~~~~vl~~l~~~~~~~~l~~~~~~LkpgG~~l~v~~ 224 (287)
T PRK12335 182 -QEEYDFILSTVVLMFLNRERIPAIIKNMQEHTNPGGYNLIVCA 224 (287)
T ss_pred -cCCccEEEEcchhhhCCHHHHHHHHHHHHHhcCCCcEEEEEEe
Confidence 67899999999999998777778888999999998 5455443
No 34
>TIGR00452 methyltransferase, putative. Known examples to date are restricted to the proteobacteria.
Probab=99.39 E-value=4.9e-12 Score=139.38 Aligned_cols=162 Identities=20% Similarity=0.285 Sum_probs=109.7
Q ss_pred HHHHHHHhhcCCCCEEEEEcCccchHHHHHhcCCCCCceEEEEeCChHHHHHHHHHHhhhhhcccccCCCCCCCccEEEE
Q 002218 702 VEYALQHIKESCATTLVDFGCGSGSLLDSLLDYPTALEKIVGVDISQKSLSRAAKIIHSKLSKKLDAAVPCTDVKSAVLF 781 (952)
Q Consensus 702 ~efVldlL~~~k~krVLDIGCGeG~ll~~LAr~g~~~~qVVGVDISeemLe~ArkrLsa~la~~~~~l~Pr~~~~nVtf~ 781 (952)
+..+...+...++++|||||||+|.++..++..+. ..|+|||+|+.|+..++..-. .. ....++.+.
T Consensus 110 ~~~~l~~l~~~~g~~VLDvGCG~G~~~~~~~~~g~--~~v~GiDpS~~ml~q~~~~~~-~~----------~~~~~v~~~ 176 (314)
T TIGR00452 110 WDRVLPHLSPLKGRTILDVGCGSGYHMWRMLGHGA--KSLVGIDPTVLFLCQFEAVRK-LL----------DNDKRAILE 176 (314)
T ss_pred HHHHHHhcCCCCCCEEEEeccCCcHHHHHHHHcCC--CEEEEEcCCHHHHHHHHHHHH-Hh----------ccCCCeEEE
Confidence 34456666667789999999999999999888773 579999999999987643211 11 122468888
Q ss_pred EcCccccCCCCCCccEEEEccccccCChhHHHHHHHHHHHccCCC-EEEEEecCCc--hhHHHHhhccCccCCCCcchhh
Q 002218 782 DGSITVFDSRLHGFDIGTCLEVIEHMEEDEASQFGNIVLSSFRPR-ILIVSTPNYE--YNAILQKSSSTIQEDDPDEKTQ 858 (952)
Q Consensus 782 qGDa~dLpf~d~sFDVVVcieVIEHL~dD~l~~L~eeI~RvLKPG-~LIISTPN~e--fN~lf~~L~~~ta~eYPde~~g 858 (952)
.+++.+++.. ..||+|+|.++++|+. ++...+ ++++++|||| .+++.+...+ .+..+. |.+
T Consensus 177 ~~~ie~lp~~-~~FD~V~s~gvL~H~~-dp~~~L-~el~r~LkpGG~Lvletl~i~g~~~~~l~----------p~~--- 240 (314)
T TIGR00452 177 PLGIEQLHEL-YAFDTVFSMGVLYHRK-SPLEHL-KQLKHQLVIKGELVLETLVIDGDLNTVLV----------PKD--- 240 (314)
T ss_pred ECCHHHCCCC-CCcCEEEEcchhhccC-CHHHHH-HHHHHhcCCCCEEEEEEEEecCccccccC----------chH---
Confidence 8999888754 5899999999999998 554555 5799999999 8888765322 111100 000
Q ss_pred hccccccCCCCccccCHHHHHHHHHHHHHHcCcEE-EEEeec
Q 002218 859 LQSCKFRNHDHKFEWTRDQFNCWATELAARHNYSV-EFSGVG 899 (952)
Q Consensus 859 ~~~~~fRh~DHkFEWTReEFqsWae~La~q~GYsV-efsGVG 899 (952)
....+ ....|.++.+++..|+ ++.||.. ++..+-
T Consensus 241 -ry~k~--~nv~flpS~~~L~~~L----~~aGF~~V~i~~~~ 275 (314)
T TIGR00452 241 -RYAKM--KNVYFIPSVSALKNWL----EKVGFENFRILDVL 275 (314)
T ss_pred -HHHhc--cccccCCCHHHHHHHH----HHCCCeEEEEEecc
Confidence 00011 1223557899999774 5679866 344433
No 35
>TIGR01983 UbiG ubiquinone biosynthesis O-methyltransferase. This model represents an O-methyltransferase believed to act at two points in the ubiquinone biosynthetic pathway in bacteria (UbiG) and fungi (COQ3). A separate methylase (MenG/UbiE) catalyzes the single C-methylation step. The most commonly used names for genes in this family do not indicate whether this gene is an O-methyl, or C-methyl transferase.
Probab=99.39 E-value=1.5e-11 Score=126.16 Aligned_cols=175 Identities=21% Similarity=0.339 Sum_probs=122.5
Q ss_pred hHHHHHHHHHHHhhc----CCCCEEEEEcCccchHHHHHhcCCCCCceEEEEeCChHHHHHHHHHHhhhhhcccccCCCC
Q 002218 697 LSKQRVEYALQHIKE----SCATTLVDFGCGSGSLLDSLLDYPTALEKIVGVDISQKSLSRAAKIIHSKLSKKLDAAVPC 772 (952)
Q Consensus 697 L~~QR~efVldlL~~----~k~krVLDIGCGeG~ll~~LAr~g~~~~qVVGVDISeemLe~ArkrLsa~la~~~~~l~Pr 772 (952)
+...|.+++.+.+.. ..+.+|||+|||+|.++..+++.+ .+++|+|+++.+++.+++++..
T Consensus 25 ~~~~~~~~i~~~~~~~~~~~~~~~vLdlG~G~G~~~~~l~~~~---~~v~~iD~s~~~~~~a~~~~~~------------ 89 (224)
T TIGR01983 25 MNPLRLDYIRDTIRKNKKPLFGLRVLDVGCGGGLLSEPLARLG---ANVTGIDASEENIEVAKLHAKK------------ 89 (224)
T ss_pred hhHHHHHHHHHHHHhcccCCCCCeEEEECCCCCHHHHHHHhcC---CeEEEEeCCHHHHHHHHHHHHH------------
Confidence 456688888888764 347899999999999999998876 5799999999999999877642
Q ss_pred CCCccEEEEEcCccccCCC-CCCccEEEEccccccCChhHHHHHHHHHHHccCCC-EEEEEecCCchhHHHHhhccCccC
Q 002218 773 TDVKSAVLFDGSITVFDSR-LHGFDIGTCLEVIEHMEEDEASQFGNIVLSSFRPR-ILIVSTPNYEYNAILQKSSSTIQE 850 (952)
Q Consensus 773 ~~~~nVtf~qGDa~dLpf~-d~sFDVVVcieVIEHL~dD~l~~L~eeI~RvLKPG-~LIISTPN~efN~lf~~L~~~ta~ 850 (952)
....++++..+|+.+.+.. .+.||+|++.++++|+.+.. .+.+.+.++|+|| .+++++++.++...+..... .
T Consensus 90 ~~~~~~~~~~~d~~~~~~~~~~~~D~i~~~~~l~~~~~~~--~~l~~~~~~L~~gG~l~i~~~~~~~~~~~~~~~~--~- 164 (224)
T TIGR01983 90 DPLLKIEYRCTSVEDLAEKGAKSFDVVTCMEVLEHVPDPQ--AFIRACAQLLKPGGILFFSTINRTPKSYLLAIVG--A- 164 (224)
T ss_pred cCCCceEEEeCCHHHhhcCCCCCccEEEehhHHHhCCCHH--HHHHHHHHhcCCCcEEEEEecCCCchHHHHHHHh--h-
Confidence 1222688999998877654 37899999999999998433 3446799999999 88888888765554432211 0
Q ss_pred CCCcchhhhccccccCCCCccccCHHHHHHHHHHHHHHcCcEE-EEEeecC
Q 002218 851 DDPDEKTQLQSCKFRNHDHKFEWTRDQFNCWATELAARHNYSV-EFSGVGG 900 (952)
Q Consensus 851 eYPde~~g~~~~~fRh~DHkFEWTReEFqsWae~La~q~GYsV-efsGVG~ 900 (952)
++- ..+.+.....+....++.++.+| +.+.||++ +..+++-
T Consensus 165 ~~~-----~~~~~~~~~~~~~~~~~~~l~~~----l~~~G~~i~~~~~~~~ 206 (224)
T TIGR01983 165 EYI-----LRIVPKGTHDWEKFIKPSELTSW----LESAGLRVKDVKGLVY 206 (224)
T ss_pred hhh-----hhcCCCCcCChhhcCCHHHHHHH----HHHcCCeeeeeeeEEe
Confidence 110 01111222233445678888854 56779987 4455444
No 36
>PLN02336 phosphoethanolamine N-methyltransferase
Probab=99.38 E-value=5.4e-12 Score=144.40 Aligned_cols=115 Identities=17% Similarity=0.164 Sum_probs=92.3
Q ss_pred HHHHHHhhcCCCCEEEEEcCccchHHHHHhcCCCCCceEEEEeCChHHHHHHHHHHhhhhhcccccCCCCCCCccEEEEE
Q 002218 703 EYALQHIKESCATTLVDFGCGSGSLLDSLLDYPTALEKIVGVDISQKSLSRAAKIIHSKLSKKLDAAVPCTDVKSAVLFD 782 (952)
Q Consensus 703 efVldlL~~~k~krVLDIGCGeG~ll~~LAr~g~~~~qVVGVDISeemLe~ArkrLsa~la~~~~~l~Pr~~~~nVtf~q 782 (952)
+.+++.+...++.+|||||||+|..+..|++..+ .+|+|+|+|+.+++.|+++.. ....++++.+
T Consensus 256 e~l~~~~~~~~~~~vLDiGcG~G~~~~~la~~~~--~~v~gvDiS~~~l~~A~~~~~-------------~~~~~v~~~~ 320 (475)
T PLN02336 256 KEFVDKLDLKPGQKVLDVGCGIGGGDFYMAENFD--VHVVGIDLSVNMISFALERAI-------------GRKCSVEFEV 320 (475)
T ss_pred HHHHHhcCCCCCCEEEEEeccCCHHHHHHHHhcC--CEEEEEECCHHHHHHHHHHhh-------------cCCCceEEEE
Confidence 3455555555678999999999999998987643 689999999999999987642 1224799999
Q ss_pred cCccccCCCCCCccEEEEccccccCChhHHHHHHHHHHHccCCC-EEEEEecC
Q 002218 783 GSITVFDSRLHGFDIGTCLEVIEHMEEDEASQFGNIVLSSFRPR-ILIVSTPN 834 (952)
Q Consensus 783 GDa~dLpf~d~sFDVVVcieVIEHL~dD~l~~L~eeI~RvLKPG-~LIISTPN 834 (952)
+|+.+.++++++||+|+|..+++|++ ++... .+++.++|||| .++++++.
T Consensus 321 ~d~~~~~~~~~~fD~I~s~~~l~h~~-d~~~~-l~~~~r~LkpgG~l~i~~~~ 371 (475)
T PLN02336 321 ADCTKKTYPDNSFDVIYSRDTILHIQ-DKPAL-FRSFFKWLKPGGKVLISDYC 371 (475)
T ss_pred cCcccCCCCCCCEEEEEECCcccccC-CHHHH-HHHHHHHcCCCeEEEEEEec
Confidence 99998887778999999999999998 44344 45799999999 77777654
No 37
>TIGR02081 metW methionine biosynthesis protein MetW. This protein is found alongside MetX, of the enzyme that acylates homoserine as a first step toward methionine biosynthesis, in many species. It appears to act in methionine biosynthesis but is not fully characterized.
Probab=99.38 E-value=1e-11 Score=126.25 Aligned_cols=156 Identities=20% Similarity=0.244 Sum_probs=103.6
Q ss_pred HHHHHhhcCCCCEEEEEcCccchHHHHHhcCCCCCceEEEEeCChHHHHHHHHHHhhhhhcccccCCCCCCCccEEEEEc
Q 002218 704 YALQHIKESCATTLVDFGCGSGSLLDSLLDYPTALEKIVGVDISQKSLSRAAKIIHSKLSKKLDAAVPCTDVKSAVLFDG 783 (952)
Q Consensus 704 fVldlL~~~k~krVLDIGCGeG~ll~~LAr~g~~~~qVVGVDISeemLe~ArkrLsa~la~~~~~l~Pr~~~~nVtf~qG 783 (952)
.+.+.+. ++.+|||+|||+|.++..+++... .+++|+|+++++++.|+++ +++++++
T Consensus 6 ~i~~~i~--~~~~iLDiGcG~G~~~~~l~~~~~--~~~~giD~s~~~i~~a~~~-------------------~~~~~~~ 62 (194)
T TIGR02081 6 SILNLIP--PGSRVLDLGCGDGELLALLRDEKQ--VRGYGIEIDQDGVLACVAR-------------------GVNVIQG 62 (194)
T ss_pred HHHHhcC--CCCEEEEeCCCCCHHHHHHHhccC--CcEEEEeCCHHHHHHHHHc-------------------CCeEEEE
Confidence 3444443 567999999999999999876542 6789999999999988541 4678888
Q ss_pred Cccc-c-CCCCCCccEEEEccccccCChhHHHHHHHHHHHccCCCEEEEEecCCchhHHHHhhccCccCCCCcchhhhcc
Q 002218 784 SITV-F-DSRLHGFDIGTCLEVIEHMEEDEASQFGNIVLSSFRPRILIVSTPNYEYNAILQKSSSTIQEDDPDEKTQLQS 861 (952)
Q Consensus 784 Da~d-L-pf~d~sFDVVVcieVIEHL~dD~l~~L~eeI~RvLKPG~LIISTPN~efN~lf~~L~~~ta~eYPde~~g~~~ 861 (952)
|+.+ + ++.+++||+|+|..++||+. +....+ +++.+.++ ..+++.||..+......+.... ..|... ...
T Consensus 63 d~~~~l~~~~~~sfD~Vi~~~~l~~~~-d~~~~l-~e~~r~~~--~~ii~~p~~~~~~~~~~~~~~~--~~~~~~--~~~ 134 (194)
T TIGR02081 63 DLDEGLEAFPDKSFDYVILSQTLQATR-NPEEIL-DEMLRVGR--HAIVSFPNFGYWRVRWSILTKG--RMPVTG--ELP 134 (194)
T ss_pred EhhhcccccCCCCcCEEEEhhHhHcCc-CHHHHH-HHHHHhCC--eEEEEcCChhHHHHHHHHHhCC--ccccCC--CCC
Confidence 8865 4 35677899999999999998 443444 46777765 4677888865543221111100 011000 001
Q ss_pred ccccCCCCccccCHHHHHHHHHHHHHHcCcEEE
Q 002218 862 CKFRNHDHKFEWTRDQFNCWATELAARHNYSVE 894 (952)
Q Consensus 862 ~~fRh~DHkFEWTReEFqsWae~La~q~GYsVe 894 (952)
....+..|..+|+.+++. ++++++||.+.
T Consensus 135 ~~~~~~~~~~~~s~~~~~----~ll~~~Gf~v~ 163 (194)
T TIGR02081 135 YDWYNTPNIHFCTIADFE----DLCGELNLRIL 163 (194)
T ss_pred ccccCCCCcccCcHHHHH----HHHHHCCCEEE
Confidence 112233456678999998 57889999985
No 38
>PRK05785 hypothetical protein; Provisional
Probab=99.37 E-value=3.6e-12 Score=133.75 Aligned_cols=100 Identities=14% Similarity=0.153 Sum_probs=81.2
Q ss_pred CCCEEEEEcCccchHHHHHhcCCCCCceEEEEeCChHHHHHHHHHHhhhhhcccccCCCCCCCccEEEEEcCccccCCCC
Q 002218 713 CATTLVDFGCGSGSLLDSLLDYPTALEKIVGVDISQKSLSRAAKIIHSKLSKKLDAAVPCTDVKSAVLFDGSITVFDSRL 792 (952)
Q Consensus 713 k~krVLDIGCGeG~ll~~LAr~g~~~~qVVGVDISeemLe~ArkrLsa~la~~~~~l~Pr~~~~nVtf~qGDa~dLpf~d 792 (952)
++.+|||||||+|.++..+++..+ .+|+|+|+|++|++.|+++ ..+.++|++++|+.+
T Consensus 51 ~~~~VLDlGcGtG~~~~~l~~~~~--~~v~gvD~S~~Ml~~a~~~--------------------~~~~~~d~~~lp~~d 108 (226)
T PRK05785 51 RPKKVLDVAAGKGELSYHFKKVFK--YYVVALDYAENMLKMNLVA--------------------DDKVVGSFEALPFRD 108 (226)
T ss_pred CCCeEEEEcCCCCHHHHHHHHhcC--CEEEEECCCHHHHHHHHhc--------------------cceEEechhhCCCCC
Confidence 468999999999999999988742 6999999999999999652 134689999999999
Q ss_pred CCccEEEEccccccCChhHHHHHHHHHHHccCCCE--EEEEecCCc
Q 002218 793 HGFDIGTCLEVIEHMEEDEASQFGNIVLSSFRPRI--LIVSTPNYE 836 (952)
Q Consensus 793 ~sFDVVVcieVIEHL~dD~l~~L~eeI~RvLKPG~--LIISTPN~e 836 (952)
++||+|++..+++|++ +....+ +++.|+|||.. +-++.|+..
T Consensus 109 ~sfD~v~~~~~l~~~~-d~~~~l-~e~~RvLkp~~~ile~~~p~~~ 152 (226)
T PRK05785 109 KSFDVVMSSFALHASD-NIEKVI-AEFTRVSRKQVGFIAMGKPDNV 152 (226)
T ss_pred CCEEEEEecChhhccC-CHHHHH-HHHHHHhcCceEEEEeCCCCcH
Confidence 9999999999999998 443444 57999999973 334556543
No 39
>TIGR03587 Pse_Me-ase pseudaminic acid biosynthesis-associated methylase. Members of this small clade are methyltransferases of the pfam08241 family and are observed within operons for the biosynthesis of pseudaminic acid, a component of exopolysaccharide and flagellin glycosyl modifications. Notable among these genomes is Pseudomonas fluorescens PfO-1. Possibly one of the two hydroxyl groups of pseudaminic acid, at positions 4 and 8 is converted to a methoxy group by this enzyme
Probab=99.36 E-value=6.6e-12 Score=130.13 Aligned_cols=116 Identities=16% Similarity=0.259 Sum_probs=89.5
Q ss_pred hHHHHHHHHHHHhhc-CCCCEEEEEcCccchHHHHHhcCCCCCceEEEEeCChHHHHHHHHHHhhhhhcccccCCCCCCC
Q 002218 697 LSKQRVEYALQHIKE-SCATTLVDFGCGSGSLLDSLLDYPTALEKIVGVDISQKSLSRAAKIIHSKLSKKLDAAVPCTDV 775 (952)
Q Consensus 697 L~~QR~efVldlL~~-~k~krVLDIGCGeG~ll~~LAr~g~~~~qVVGVDISeemLe~ArkrLsa~la~~~~~l~Pr~~~ 775 (952)
+.....+++.+.+.. .++.+|||||||+|.++..|++.. +..+++|||+|++|++.|++++
T Consensus 26 ~~~~~~~~~~~~l~~~~~~~~VLDiGCG~G~~~~~L~~~~-~~~~v~giDiS~~~l~~A~~~~----------------- 87 (204)
T TIGR03587 26 LVAAKLAMFARALNRLPKIASILELGANIGMNLAALKRLL-PFKHIYGVEINEYAVEKAKAYL----------------- 87 (204)
T ss_pred HHHHHHHHHHHHHHhcCCCCcEEEEecCCCHHHHHHHHhC-CCCeEEEEECCHHHHHHHHhhC-----------------
Confidence 334444555554433 356789999999999999998863 2378999999999999997642
Q ss_pred ccEEEEEcCccccCCCCCCccEEEEccccccCChhHHHHHHHHHHHccCCCEEEEEe
Q 002218 776 KSAVLFDGSITVFDSRLHGFDIGTCLEVIEHMEEDEASQFGNIVLSSFRPRILIVST 832 (952)
Q Consensus 776 ~nVtf~qGDa~dLpf~d~sFDVVVcieVIEHL~dD~l~~L~eeI~RvLKPG~LIIST 832 (952)
+++.+.++|+.+ ++.+++||+|++.++++|++++....+.+++.++++ +.++|..
T Consensus 88 ~~~~~~~~d~~~-~~~~~sfD~V~~~~vL~hl~p~~~~~~l~el~r~~~-~~v~i~e 142 (204)
T TIGR03587 88 PNINIIQGSLFD-PFKDNFFDLVLTKGVLIHINPDNLPTAYRELYRCSN-RYILIAE 142 (204)
T ss_pred CCCcEEEeeccC-CCCCCCEEEEEECChhhhCCHHHHHHHHHHHHhhcC-cEEEEEE
Confidence 246788999888 778889999999999999987777777778999884 3555544
No 40
>PRK11705 cyclopropane fatty acyl phospholipid synthase; Provisional
Probab=99.35 E-value=8.2e-12 Score=140.76 Aligned_cols=161 Identities=16% Similarity=0.186 Sum_probs=113.9
Q ss_pred ccccccceecccCCchhhhhhhccCcccchhcccccccccceeeeecccCCChhhhhhhhcCCchhHHHHHHHHHHHhhc
Q 002218 632 MSVGQSACFCKELPPQELILAAADDSARTFSLLSSRACCLEYHITLLRVTEPPEDRMEQALFSPPLSKQRVEYALQHIKE 711 (952)
Q Consensus 632 ~sv~q~~~~~~~l~~~~l~lAa~~~~~~DiSlLs~d~~~LEyyI~LL~v~ep~EeRye~~~F~PPL~~QR~efVldlL~~ 711 (952)
+|..+...++..+ .+...|+-.+-.+.. +.|+.-.....+..++ .....+..+.+.+..
T Consensus 107 n~~~~~~~~i~~h----------Yd~~n~~y~l~ld~~-m~ys~g~~~~~~~L~~----------Aq~~k~~~l~~~l~l 165 (383)
T PRK11705 107 QSKKRAWIVGKEH----------YDLGNDLFEAMLDPR-MQYSCGYWKDADTLEE----------AQEAKLDLICRKLQL 165 (383)
T ss_pred CChhhHHHhhhhh----------cCCcHHHHHHhcCCC-CcccccccCCCCCHHH----------HHHHHHHHHHHHhCC
Confidence 4666666666655 445555544444444 4444444322222221 123345566677766
Q ss_pred CCCCEEEEEcCccchHHHHHhcCCCCCceEEEEeCChHHHHHHHHHHhhhhhcccccCCCCCCCccEEEEEcCccccCCC
Q 002218 712 SCATTLVDFGCGSGSLLDSLLDYPTALEKIVGVDISQKSLSRAAKIIHSKLSKKLDAAVPCTDVKSAVLFDGSITVFDSR 791 (952)
Q Consensus 712 ~k~krVLDIGCGeG~ll~~LAr~g~~~~qVVGVDISeemLe~ArkrLsa~la~~~~~l~Pr~~~~nVtf~qGDa~dLpf~ 791 (952)
.++.+|||||||+|.++..+++..+ .+|+|+|+|+++++.|+++.. + ..+++..+|..++
T Consensus 166 ~~g~rVLDIGcG~G~~a~~la~~~g--~~V~giDlS~~~l~~A~~~~~--------------~-l~v~~~~~D~~~l--- 225 (383)
T PRK11705 166 KPGMRVLDIGCGWGGLARYAAEHYG--VSVVGVTISAEQQKLAQERCA--------------G-LPVEIRLQDYRDL--- 225 (383)
T ss_pred CCCCEEEEeCCCccHHHHHHHHHCC--CEEEEEeCCHHHHHHHHHHhc--------------c-CeEEEEECchhhc---
Confidence 7788999999999999999987643 699999999999999988652 1 2578888888765
Q ss_pred CCCccEEEEccccccCChhHHHHHHHHHHHccCCC-EEEEEec
Q 002218 792 LHGFDIGTCLEVIEHMEEDEASQFGNIVLSSFRPR-ILIVSTP 833 (952)
Q Consensus 792 d~sFDVVVcieVIEHL~dD~l~~L~eeI~RvLKPG-~LIISTP 833 (952)
.+.||+|++.+++||++......+.+++.++|||| .+++.+.
T Consensus 226 ~~~fD~Ivs~~~~ehvg~~~~~~~l~~i~r~LkpGG~lvl~~i 268 (383)
T PRK11705 226 NGQFDRIVSVGMFEHVGPKNYRTYFEVVRRCLKPDGLFLLHTI 268 (383)
T ss_pred CCCCCEEEEeCchhhCChHHHHHHHHHHHHHcCCCcEEEEEEc
Confidence 46899999999999998666666777899999999 6666554
No 41
>PRK08317 hypothetical protein; Provisional
Probab=99.35 E-value=1.4e-11 Score=125.16 Aligned_cols=123 Identities=19% Similarity=0.214 Sum_probs=97.8
Q ss_pred hHHHHHHHHHHHhhcCCCCEEEEEcCccchHHHHHhcCCCCCceEEEEeCChHHHHHHHHHHhhhhhcccccCCCCCCCc
Q 002218 697 LSKQRVEYALQHIKESCATTLVDFGCGSGSLLDSLLDYPTALEKIVGVDISQKSLSRAAKIIHSKLSKKLDAAVPCTDVK 776 (952)
Q Consensus 697 L~~QR~efVldlL~~~k~krVLDIGCGeG~ll~~LAr~g~~~~qVVGVDISeemLe~ArkrLsa~la~~~~~l~Pr~~~~ 776 (952)
......+.+.+.+...++.+|||+|||+|.++..+++..++..+++|+|+++.+++.|+++.. ....
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~vLdiG~G~G~~~~~~a~~~~~~~~v~~~d~~~~~~~~a~~~~~-------------~~~~ 69 (241)
T PRK08317 3 DFRRYRARTFELLAVQPGDRVLDVGCGPGNDARELARRVGPEGRVVGIDRSEAMLALAKERAA-------------GLGP 69 (241)
T ss_pred hHHHHHHHHHHHcCCCCCCEEEEeCCCCCHHHHHHHHhcCCCcEEEEEeCCHHHHHHHHHHhh-------------CCCC
Confidence 334444556667777778899999999999999998765344799999999999999987622 1234
Q ss_pred cEEEEEcCccccCCCCCCccEEEEccccccCChhHHHHHHHHHHHccCCC-EEEEEecC
Q 002218 777 SAVLFDGSITVFDSRLHGFDIGTCLEVIEHMEEDEASQFGNIVLSSFRPR-ILIVSTPN 834 (952)
Q Consensus 777 nVtf~qGDa~dLpf~d~sFDVVVcieVIEHL~dD~l~~L~eeI~RvLKPG-~LIISTPN 834 (952)
++++..+|+.+.++....||+|++..+++|+. +.... .+++.++|+|| .+++..|+
T Consensus 70 ~~~~~~~d~~~~~~~~~~~D~v~~~~~~~~~~-~~~~~-l~~~~~~L~~gG~l~~~~~~ 126 (241)
T PRK08317 70 NVEFVRGDADGLPFPDGSFDAVRSDRVLQHLE-DPARA-LAEIARVLRPGGRVVVLDTD 126 (241)
T ss_pred ceEEEecccccCCCCCCCceEEEEechhhccC-CHHHH-HHHHHHHhcCCcEEEEEecC
Confidence 78999999988888788999999999999998 44344 46799999999 77777664
No 42
>PRK05134 bifunctional 3-demethylubiquinone-9 3-methyltransferase/ 2-octaprenyl-6-hydroxy phenol methylase; Provisional
Probab=99.35 E-value=3.9e-11 Score=124.39 Aligned_cols=175 Identities=20% Similarity=0.296 Sum_probs=121.0
Q ss_pred hhHHHHHHHHHHHhhcCCCCEEEEEcCccchHHHHHhcCCCCCceEEEEeCChHHHHHHHHHHhhhhhcccccCCCCCCC
Q 002218 696 PLSKQRVEYALQHIKESCATTLVDFGCGSGSLLDSLLDYPTALEKIVGVDISQKSLSRAAKIIHSKLSKKLDAAVPCTDV 775 (952)
Q Consensus 696 PL~~QR~efVldlL~~~k~krVLDIGCGeG~ll~~LAr~g~~~~qVVGVDISeemLe~ArkrLsa~la~~~~~l~Pr~~~ 775 (952)
++...|.+++...+...++.+|||||||+|.++..+++.+ .+++|+|+++.+++.|++++.. ..
T Consensus 31 ~~~~~~~~~l~~~~~~~~~~~vLdiG~G~G~~~~~l~~~~---~~v~~iD~s~~~~~~a~~~~~~------------~~- 94 (233)
T PRK05134 31 RINPLRLNYIREHAGGLFGKRVLDVGCGGGILSESMARLG---ADVTGIDASEENIEVARLHALE------------SG- 94 (233)
T ss_pred HhhHHHHHHHHHhccCCCCCeEEEeCCCCCHHHHHHHHcC---CeEEEEcCCHHHHHHHHHHHHH------------cC-
Confidence 3445678888888776778899999999999999998876 6899999999999999876532 11
Q ss_pred ccEEEEEcCccccC-CCCCCccEEEEccccccCChhHHHHHHHHHHHccCCC-EEEEEecCCchhHHHHhhccCccCCCC
Q 002218 776 KSAVLFDGSITVFD-SRLHGFDIGTCLEVIEHMEEDEASQFGNIVLSSFRPR-ILIVSTPNYEYNAILQKSSSTIQEDDP 853 (952)
Q Consensus 776 ~nVtf~qGDa~dLp-f~d~sFDVVVcieVIEHL~dD~l~~L~eeI~RvLKPG-~LIISTPN~efN~lf~~L~~~ta~eYP 853 (952)
.++++..+++.+.+ ...+.||+|++..+++|+++ ... +.+.+.++|+|| .+++++++.........+.. . ++-
T Consensus 95 ~~~~~~~~~~~~~~~~~~~~fD~Ii~~~~l~~~~~-~~~-~l~~~~~~L~~gG~l~v~~~~~~~~~~~~~~~~--~-~~~ 169 (233)
T PRK05134 95 LKIDYRQTTAEELAAEHPGQFDVVTCMEMLEHVPD-PAS-FVRACAKLVKPGGLVFFSTLNRNLKSYLLAIVG--A-EYV 169 (233)
T ss_pred CceEEEecCHHHhhhhcCCCccEEEEhhHhhccCC-HHH-HHHHHHHHcCCCcEEEEEecCCChHHHHHHHhh--H-HHH
Confidence 25788888887765 24578999999999999984 333 446799999998 88888876543322211100 0 000
Q ss_pred cchhhhccccccCCCCccccCHHHHHHHHHHHHHHcCcEEE-EEeecC
Q 002218 854 DEKTQLQSCKFRNHDHKFEWTRDQFNCWATELAARHNYSVE-FSGVGG 900 (952)
Q Consensus 854 de~~g~~~~~fRh~DHkFEWTReEFqsWae~La~q~GYsVe-fsGVG~ 900 (952)
..+.+.....+...++.+++. .++.+.||.+. ..|...
T Consensus 170 -----~~~~~~~~~~~~~~~~~~~~~----~~l~~~Gf~~v~~~~~~~ 208 (233)
T PRK05134 170 -----LRMLPKGTHDYKKFIKPSELA----AWLRQAGLEVQDITGLHY 208 (233)
T ss_pred -----hhhcCcccCchhhcCCHHHHH----HHHHHCCCeEeeeeeEEe
Confidence 001111122344557888887 56778999874 555554
No 43
>PRK01683 trans-aconitate 2-methyltransferase; Provisional
Probab=99.34 E-value=6.7e-12 Score=132.16 Aligned_cols=110 Identities=21% Similarity=0.369 Sum_probs=87.5
Q ss_pred HHHHhhcCCCCEEEEEcCccchHHHHHhcCCCCCceEEEEeCChHHHHHHHHHHhhhhhcccccCCCCCCCccEEEEEcC
Q 002218 705 ALQHIKESCATTLVDFGCGSGSLLDSLLDYPTALEKIVGVDISQKSLSRAAKIIHSKLSKKLDAAVPCTDVKSAVLFDGS 784 (952)
Q Consensus 705 VldlL~~~k~krVLDIGCGeG~ll~~LAr~g~~~~qVVGVDISeemLe~ArkrLsa~la~~~~~l~Pr~~~~nVtf~qGD 784 (952)
+++.+...++.+|||||||+|.++..+++.. +..+|+|+|+|+.|++.|++++ .++++..+|
T Consensus 23 ll~~~~~~~~~~vLDiGcG~G~~~~~la~~~-~~~~v~gvD~s~~~i~~a~~~~-----------------~~~~~~~~d 84 (258)
T PRK01683 23 LLARVPLENPRYVVDLGCGPGNSTELLVERW-PAARITGIDSSPAMLAEARSRL-----------------PDCQFVEAD 84 (258)
T ss_pred HHhhCCCcCCCEEEEEcccCCHHHHHHHHHC-CCCEEEEEECCHHHHHHHHHhC-----------------CCCeEEECc
Confidence 3344444567899999999999999998765 3479999999999999997642 367899999
Q ss_pred ccccCCCCCCccEEEEccccccCChhHHHHHHHHHHHccCCC-EEEEEecCC
Q 002218 785 ITVFDSRLHGFDIGTCLEVIEHMEEDEASQFGNIVLSSFRPR-ILIVSTPNY 835 (952)
Q Consensus 785 a~dLpf~d~sFDVVVcieVIEHL~dD~l~~L~eeI~RvLKPG-~LIISTPN~ 835 (952)
+.++. ...+||+|++..+++|++ +....+ +++.++|||| .+++.+|+.
T Consensus 85 ~~~~~-~~~~fD~v~~~~~l~~~~-d~~~~l-~~~~~~LkpgG~~~~~~~~~ 133 (258)
T PRK01683 85 IASWQ-PPQALDLIFANASLQWLP-DHLELF-PRLVSLLAPGGVLAVQMPDN 133 (258)
T ss_pred hhccC-CCCCccEEEEccChhhCC-CHHHHH-HHHHHhcCCCcEEEEECCCC
Confidence 98765 346899999999999998 444444 5799999999 777777753
No 44
>PF03848 TehB: Tellurite resistance protein TehB; InterPro: IPR015985 Tellurite resistance protein TehB is part of a tellurite-reducing operon tehA and tehB. When present in high copy number, TehB is responsible for potassium tellurite resistance, probably by increasing the reduction rate of tellurite to metallic tellurium within the bacterium. TehB is a cytoplasmic protein which possesses three conserved motifs (I, II, and III) found in S-adenosyl-L-methionine (SAM)-dependent non-nucleic acid methyltransferases []. Conformational changes in TehB are observed upon binding of both tellurite and SAM, suggesting that TehB utilises a methyltransferase activity in the detoxification of tellurite. This entry represents the methyltransferase domain found in all TehB proteins.; PDB: 2KW5_A 3MER_B 3M70_A 2I6G_A 4DQ0_D 2XVA_B 2XVM_A.
Probab=99.33 E-value=1.1e-11 Score=128.18 Aligned_cols=111 Identities=17% Similarity=0.210 Sum_probs=87.5
Q ss_pred HHHHhhcCCCCEEEEEcCccchHHHHHhcCCCCCceEEEEeCChHHHHHHHHHHhhhhhcccccCCCCCCCccEEEEEcC
Q 002218 705 ALQHIKESCATTLVDFGCGSGSLLDSLLDYPTALEKIVGVDISQKSLSRAAKIIHSKLSKKLDAAVPCTDVKSAVLFDGS 784 (952)
Q Consensus 705 VldlL~~~k~krVLDIGCGeG~ll~~LAr~g~~~~qVVGVDISeemLe~ArkrLsa~la~~~~~l~Pr~~~~nVtf~qGD 784 (952)
+.+.++..++.++||+|||+|+.+.+||+.| ..|+++|+|+.+++.+++.... .+ .+|+..+.|
T Consensus 22 v~~a~~~~~~g~~LDlgcG~GRNalyLA~~G---~~VtAvD~s~~al~~l~~~a~~------------~~-l~i~~~~~D 85 (192)
T PF03848_consen 22 VLEAVPLLKPGKALDLGCGEGRNALYLASQG---FDVTAVDISPVALEKLQRLAEE------------EG-LDIRTRVAD 85 (192)
T ss_dssp HHHHCTTS-SSEEEEES-TTSHHHHHHHHTT----EEEEEESSHHHHHHHHHHHHH------------TT--TEEEEE-B
T ss_pred HHHHHhhcCCCcEEEcCCCCcHHHHHHHHCC---CeEEEEECCHHHHHHHHHHHhh------------cC-ceeEEEEec
Confidence 4444556678999999999999999999999 8999999999999998765432 12 359999999
Q ss_pred ccccCCCCCCccEEEEccccccCChhHHHHHHHHHHHccCCC-EEEEEe
Q 002218 785 ITVFDSRLHGFDIGTCLEVIEHMEEDEASQFGNIVLSSFRPR-ILIVST 832 (952)
Q Consensus 785 a~dLpf~d~sFDVVVcieVIEHL~dD~l~~L~eeI~RvLKPG-~LIIST 832 (952)
+.+..+. ..||+|++..|++|+..+....+.+.|...++|| ..++.+
T Consensus 86 l~~~~~~-~~yD~I~st~v~~fL~~~~~~~i~~~m~~~~~pGG~~li~~ 133 (192)
T PF03848_consen 86 LNDFDFP-EEYDFIVSTVVFMFLQRELRPQIIENMKAATKPGGYNLIVT 133 (192)
T ss_dssp GCCBS-T-TTEEEEEEESSGGGS-GGGHHHHHHHHHHTEEEEEEEEEEE
T ss_pred chhcccc-CCcCEEEEEEEeccCCHHHHHHHHHHHHhhcCCcEEEEEEE
Confidence 9888764 6899999999999999998888888999999999 545544
No 45
>TIGR02072 BioC biotin biosynthesis protein BioC. This enzyme, which is found in biotin biosynthetic gene clusters in proteobacteria, firmicutes, green-sulfur bacteria, fusobacterium and bacteroides, is believed to carry out an enzymatic step prior to the formation of pimeloyl-CoA (although attribution of this annotation is not traceable). The enzyme appears related to methyltransferases by homology.
Probab=99.33 E-value=1.1e-11 Score=126.58 Aligned_cols=106 Identities=20% Similarity=0.282 Sum_probs=88.8
Q ss_pred CCCEEEEEcCccchHHHHHhcCCCCCceEEEEeCChHHHHHHHHHHhhhhhcccccCCCCCCCccEEEEEcCccccCCCC
Q 002218 713 CATTLVDFGCGSGSLLDSLLDYPTALEKIVGVDISQKSLSRAAKIIHSKLSKKLDAAVPCTDVKSAVLFDGSITVFDSRL 792 (952)
Q Consensus 713 k~krVLDIGCGeG~ll~~LAr~g~~~~qVVGVDISeemLe~ArkrLsa~la~~~~~l~Pr~~~~nVtf~qGDa~dLpf~d 792 (952)
.+.+|||+|||+|.++..+++.+ +..+++|+|+++.+++.+++++. +++.++.+|+.+.++.+
T Consensus 34 ~~~~vLDlG~G~G~~~~~l~~~~-~~~~~~~~D~~~~~~~~~~~~~~----------------~~~~~~~~d~~~~~~~~ 96 (240)
T TIGR02072 34 IPASVLDIGCGTGYLTRALLKRF-PQAEFIALDISAGMLAQAKTKLS----------------ENVQFICGDAEKLPLED 96 (240)
T ss_pred CCCeEEEECCCccHHHHHHHHhC-CCCcEEEEeChHHHHHHHHHhcC----------------CCCeEEecchhhCCCCC
Confidence 45799999999999999999887 45679999999999999976531 26889999999998888
Q ss_pred CCccEEEEccccccCChhHHHHHHHHHHHccCCC-EEEEEecCCch
Q 002218 793 HGFDIGTCLEVIEHMEEDEASQFGNIVLSSFRPR-ILIVSTPNYEY 837 (952)
Q Consensus 793 ~sFDVVVcieVIEHL~dD~l~~L~eeI~RvLKPG-~LIISTPN~ef 837 (952)
++||+|++..+++|+. +... +.+++.++|+|| .+++.+++...
T Consensus 97 ~~fD~vi~~~~l~~~~-~~~~-~l~~~~~~L~~~G~l~~~~~~~~~ 140 (240)
T TIGR02072 97 SSFDLIVSNLALQWCD-DLSQ-ALSELARVLKPGGLLAFSTFGPGT 140 (240)
T ss_pred CceeEEEEhhhhhhcc-CHHH-HHHHHHHHcCCCcEEEEEeCCccC
Confidence 8999999999999997 4434 446799999998 88888887543
No 46
>smart00828 PKS_MT Methyltransferase in polyketide synthase (PKS) enzymes.
Probab=99.31 E-value=3.4e-11 Score=123.93 Aligned_cols=105 Identities=19% Similarity=0.229 Sum_probs=84.0
Q ss_pred CEEEEEcCccchHHHHHhcCCCCCceEEEEeCChHHHHHHHHHHhhhhhcccccCCCCCCCccEEEEEcCccccCCCCCC
Q 002218 715 TTLVDFGCGSGSLLDSLLDYPTALEKIVGVDISQKSLSRAAKIIHSKLSKKLDAAVPCTDVKSAVLFDGSITVFDSRLHG 794 (952)
Q Consensus 715 krVLDIGCGeG~ll~~LAr~g~~~~qVVGVDISeemLe~ArkrLsa~la~~~~~l~Pr~~~~nVtf~qGDa~dLpf~d~s 794 (952)
++|||||||+|.++..+++.. +..+|+|+|+|+++++.|++++... +...++++..+|+...+.. ..
T Consensus 1 ~~vLDiGcG~G~~~~~la~~~-~~~~v~gid~s~~~~~~a~~~~~~~-----------gl~~~i~~~~~d~~~~~~~-~~ 67 (224)
T smart00828 1 KRVLDFGCGYGSDLIDLAERH-PHLQLHGYTISPEQAEVGRERIRAL-----------GLQGRIRIFYRDSAKDPFP-DT 67 (224)
T ss_pred CeEEEECCCCCHHHHHHHHHC-CCCEEEEEECCHHHHHHHHHHHHhc-----------CCCcceEEEecccccCCCC-CC
Confidence 479999999999999998865 2378999999999999998876421 2234789999998766543 58
Q ss_pred ccEEEEccccccCChhHHHHHHHHHHHccCCC-EEEEEecC
Q 002218 795 FDIGTCLEVIEHMEEDEASQFGNIVLSSFRPR-ILIVSTPN 834 (952)
Q Consensus 795 FDVVVcieVIEHL~dD~l~~L~eeI~RvLKPG-~LIISTPN 834 (952)
||+|++.++++|+.+ .. .+.+++.++|||| .+++.++.
T Consensus 68 fD~I~~~~~l~~~~~-~~-~~l~~~~~~LkpgG~l~i~~~~ 106 (224)
T smart00828 68 YDLVFGFEVIHHIKD-KM-DLFSNISRHLKDGGHLVLADFI 106 (224)
T ss_pred CCEeehHHHHHhCCC-HH-HHHHHHHHHcCCCCEEEEEEcc
Confidence 999999999999984 43 4556799999999 77777654
No 47
>PF05401 NodS: Nodulation protein S (NodS); InterPro: IPR008715 This entry consists of nodulation S (NodS) proteins. The products of the rhizobial nodulation genes are involved in the biosynthesis of lipochitin oligosaccharides (LCOs), which are host-specific signal molecules required for nodule formation. NodS is an S-adenosyl-L-methionine (SAM)-dependent methyltransferase involved in N methylation of LCOs. NodS uses N-deacetylated chitooligosaccharides, the products of the NodBC proteins, as its methyl acceptors [].; GO: 0008757 S-adenosylmethionine-dependent methyltransferase activity, 0009312 oligosaccharide biosynthetic process, 0009877 nodulation; PDB: 3OFK_D 3OFJ_A.
Probab=99.30 E-value=1.9e-11 Score=126.78 Aligned_cols=122 Identities=16% Similarity=0.284 Sum_probs=92.3
Q ss_pred CchhHHH-HHHHHHH-HhhcCCCCEEEEEcCccchHHHHHhcCCCCCceEEEEeCChHHHHHHHHHHhhhhhcccccCCC
Q 002218 694 SPPLSKQ-RVEYALQ-HIKESCATTLVDFGCGSGSLLDSLLDYPTALEKIVGVDISQKSLSRAAKIIHSKLSKKLDAAVP 771 (952)
Q Consensus 694 ~PPL~~Q-R~efVld-lL~~~k~krVLDIGCGeG~ll~~LAr~g~~~~qVVGVDISeemLe~ArkrLsa~la~~~~~l~P 771 (952)
....|++ |+..++. .|....-.++||+|||.|.++..|+.++ .+++++|+|+.+|+.|++++.
T Consensus 22 ~~~~YE~~K~~~~l~aaLp~~ry~~alEvGCs~G~lT~~LA~rC---d~LlavDis~~Al~~Ar~Rl~------------ 86 (201)
T PF05401_consen 22 ETSWYERRKYRATLLAALPRRRYRRALEVGCSIGVLTERLAPRC---DRLLAVDISPRALARARERLA------------ 86 (201)
T ss_dssp TT-HHHHHHHHHHHHHHHTTSSEEEEEEE--TTSHHHHHHGGGE---EEEEEEES-HHHHHHHHHHTT------------
T ss_pred CCCHHHHHHHHHHHHHhcCccccceeEecCCCccHHHHHHHHhh---CceEEEeCCHHHHHHHHHhcC------------
Confidence 3356666 4555554 4666666899999999999999999998 799999999999999999864
Q ss_pred CCCCccEEEEEcCccccCCCCCCccEEEEccccccCCh-hHHHHHHHHHHHccCCC-EEEEEec
Q 002218 772 CTDVKSAVLFDGSITVFDSRLHGFDIGTCLEVIEHMEE-DEASQFGNIVLSSFRPR-ILIVSTP 833 (952)
Q Consensus 772 r~~~~nVtf~qGDa~dLpf~d~sFDVVVcieVIEHL~d-D~l~~L~eeI~RvLKPG-~LIISTP 833 (952)
+.++|++.++++.+.. +.+.||+|++.+|++++.+ +++..+.+.+...|+|| .+|+.+.
T Consensus 87 --~~~~V~~~~~dvp~~~-P~~~FDLIV~SEVlYYL~~~~~L~~~l~~l~~~L~pgG~LV~g~~ 147 (201)
T PF05401_consen 87 --GLPHVEWIQADVPEFW-PEGRFDLIVLSEVLYYLDDAEDLRAALDRLVAALAPGGHLVFGHA 147 (201)
T ss_dssp --T-SSEEEEES-TTT----SS-EEEEEEES-GGGSSSHHHHHHHHHHHHHTEEEEEEEEEEEE
T ss_pred --CCCCeEEEECcCCCCC-CCCCeeEEEEehHhHcCCCHHHHHHHHHHHHHHhCCCCEEEEEEe
Confidence 3468999999997764 5689999999999999985 67778878899999999 7777664
No 48
>TIGR02469 CbiT precorrin-6Y C5,15-methyltransferase (decarboxylating), CbiT subunit. This model recognizes the CbiT methylase which is responsible, in part (along with CbiE), for methylating precorrin-6y (or cobalt-precorrin-6y) at both the 5 and 15 positions as well as the concomitant decarbozylation at C-12. In many organisms, this protein is fused to the CbiE subunit. The fused protein, when found in organisms catalyzing the oxidative version of the cobalamin biosynthesis pathway, is called CobL.
Probab=99.28 E-value=5.7e-11 Score=109.59 Aligned_cols=113 Identities=14% Similarity=0.182 Sum_probs=85.2
Q ss_pred HHHHHHHhhcCCCCEEEEEcCccchHHHHHhcCCCCCceEEEEeCChHHHHHHHHHHhhhhhcccccCCCCCCCccEEEE
Q 002218 702 VEYALQHIKESCATTLVDFGCGSGSLLDSLLDYPTALEKIVGVDISQKSLSRAAKIIHSKLSKKLDAAVPCTDVKSAVLF 781 (952)
Q Consensus 702 ~efVldlL~~~k~krVLDIGCGeG~ll~~LAr~g~~~~qVVGVDISeemLe~ArkrLsa~la~~~~~l~Pr~~~~nVtf~ 781 (952)
...+.+.+...++.+|||+|||.|.++..+++.. +..+|+|+|+++.+++.+++++.. .+..++++.
T Consensus 8 ~~~~~~~~~~~~~~~vldlG~G~G~~~~~l~~~~-~~~~v~~vD~s~~~~~~a~~~~~~------------~~~~~~~~~ 74 (124)
T TIGR02469 8 RALTLSKLRLRPGDVLWDIGAGSGSITIEAARLV-PNGRVYAIERNPEALRLIERNARR------------FGVSNIVIV 74 (124)
T ss_pred HHHHHHHcCCCCCCEEEEeCCCCCHHHHHHHHHC-CCceEEEEcCCHHHHHHHHHHHHH------------hCCCceEEE
Confidence 4445666655567899999999999999999875 237899999999999999877642 123478899
Q ss_pred EcCccc-cCCCCCCccEEEEccccccCChhHHHHHHHHHHHccCCC-EEEEEe
Q 002218 782 DGSITV-FDSRLHGFDIGTCLEVIEHMEEDEASQFGNIVLSSFRPR-ILIVST 832 (952)
Q Consensus 782 qGDa~d-Lpf~d~sFDVVVcieVIEHL~dD~l~~L~eeI~RvLKPG-~LIIST 832 (952)
.+|+.+ ++.....||+|++....+++ ..+.+.+.++|+|| .++++.
T Consensus 75 ~~~~~~~~~~~~~~~D~v~~~~~~~~~-----~~~l~~~~~~Lk~gG~li~~~ 122 (124)
T TIGR02469 75 EGDAPEALEDSLPEPDRVFIGGSGGLL-----QEILEAIWRRLRPGGRIVLNA 122 (124)
T ss_pred eccccccChhhcCCCCEEEECCcchhH-----HHHHHHHHHHcCCCCEEEEEe
Confidence 998875 33334689999997754433 35567899999999 777664
No 49
>TIGR03840 TMPT_Se_Te thiopurine S-methyltransferase, Se/Te detoxification family. Members of this family are thiopurine S-methyltransferase from a branch in which at least some member proteins can perform selenium methylation as a means to detoxify selenium, or perform a related detoxification of tellurium. Note that the EC number definition does not specify a particular thiopurine, but rather represents a class of activity.
Probab=99.27 E-value=4.5e-11 Score=124.97 Aligned_cols=117 Identities=14% Similarity=0.167 Sum_probs=88.7
Q ss_pred CCCEEEEEcCccchHHHHHhcCCCCCceEEEEeCChHHHHHHHHHHhhhhhcccccC--CCCCCCccEEEEEcCccccCC
Q 002218 713 CATTLVDFGCGSGSLLDSLLDYPTALEKIVGVDISQKSLSRAAKIIHSKLSKKLDAA--VPCTDVKSAVLFDGSITVFDS 790 (952)
Q Consensus 713 k~krVLDIGCGeG~ll~~LAr~g~~~~qVVGVDISeemLe~ArkrLsa~la~~~~~l--~Pr~~~~nVtf~qGDa~dLpf 790 (952)
++.+|||+|||.|..+.+||++| .+|+|||+|+.+++.+.+... .......+ ..+....+|+++++|+.+++.
T Consensus 34 ~~~rvLd~GCG~G~da~~LA~~G---~~V~gvD~S~~Ai~~~~~~~~--~~~~~~~~~~~~~~~~~~v~~~~~D~~~~~~ 108 (213)
T TIGR03840 34 AGARVFVPLCGKSLDLAWLAEQG---HRVLGVELSEIAVEQFFAENG--LTPTVTQQGEFTRYRAGNIEIFCGDFFALTA 108 (213)
T ss_pred CCCeEEEeCCCchhHHHHHHhCC---CeEEEEeCCHHHHHHHHHHcC--CCcceeccccceeeecCceEEEEccCCCCCc
Confidence 55799999999999999999998 899999999999998643211 00000000 000123479999999998875
Q ss_pred C-CCCccEEEEccccccCChhHHHHHHHHHHHccCCC-EEEEEecC
Q 002218 791 R-LHGFDIGTCLEVIEHMEEDEASQFGNIVLSSFRPR-ILIVSTPN 834 (952)
Q Consensus 791 ~-d~sFDVVVcieVIEHL~dD~l~~L~eeI~RvLKPG-~LIISTPN 834 (952)
. ...||.|+...+++|++++.+..+.+.+.++|||| .+++.+-.
T Consensus 109 ~~~~~fD~i~D~~~~~~l~~~~R~~~~~~l~~lLkpgG~~ll~~~~ 154 (213)
T TIGR03840 109 ADLGPVDAVYDRAALIALPEEMRQRYAAHLLALLPPGARQLLITLD 154 (213)
T ss_pred ccCCCcCEEEechhhccCCHHHHHHHHHHHHHHcCCCCeEEEEEEE
Confidence 4 45799999999999999888888889999999998 55555443
No 50
>PF08242 Methyltransf_12: Methyltransferase domain; InterPro: IPR013217 Methyl transfer from the ubiquitous donor S-adenosyl-L-methionine (SAM) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalyzed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. This entry represents a methyltransferase domain found in a large variety of SAM-dependent methyltransferases including, but not limited to: Hexaprenyldihydroxybenzoate methyltransferase (2.1.1.114 from EC), a mitochodrial enzyme involved in ubiquinone biosynthesis [] Fatty acid synthase (2.3.1.85 from EC), a biosynthetic enzyme catalysing the formation of long-chain fatty acids Glycine N-methyltransferase (2.1.1.20 from EC) which catalyses the SAM-dependent methylation of glycine to form sarcosine and may play a role in regulating the methylation potential of the cell [] Enniatin synthetase, involved in non-ribosomal biosynthesis of cyclohexadepsipeptidase, enniatin [] Histamine N-methyltransferase (2.1.1.8 from EC), a SAM-dependent histamine-inactivating enzyme [] A probable cobalt-precorrin-6Y C(15)-methyltransferase thought to be involved in adenosylcobalamin biosynthesis [] Structural studies show that this domain forms the Rossman-like alpha-beta fold typical of SAM-dependent methyltransferases [, , ].; PDB: 2VZ8_A 2VZ9_A.
Probab=99.25 E-value=1.6e-12 Score=117.55 Aligned_cols=96 Identities=25% Similarity=0.350 Sum_probs=58.5
Q ss_pred EEEcCccchHHHHHhcCCCCCceEEEEeCChHHHHHHHHHHhhhhhcccccCCCCCCCccEEEEEcCccccCCC--CCCc
Q 002218 718 VDFGCGSGSLLDSLLDYPTALEKIVGVDISQKSLSRAAKIIHSKLSKKLDAAVPCTDVKSAVLFDGSITVFDSR--LHGF 795 (952)
Q Consensus 718 LDIGCGeG~ll~~LAr~g~~~~qVVGVDISeemLe~ArkrLsa~la~~~~~l~Pr~~~~nVtf~qGDa~dLpf~--d~sF 795 (952)
||||||+|.++..+++.. +..+++|+|+|+.|++.|++++... ...+......+..+.... .++|
T Consensus 1 LdiGcG~G~~~~~l~~~~-~~~~~~~~D~s~~~l~~a~~~~~~~------------~~~~~~~~~~~~~~~~~~~~~~~f 67 (99)
T PF08242_consen 1 LDIGCGTGRLLRALLEEL-PDARYTGVDISPSMLERARERLAEL------------GNDNFERLRFDVLDLFDYDPPESF 67 (99)
T ss_dssp -EESTTTS-TTTTHHHHC--EEEEEEEESSSSTTSTTCCCHHHC------------T---EEEEE--SSS---CCC----
T ss_pred CEeCccChHHHHHHHHhC-CCCEEEEEECCHHHHHHHHHHhhhc------------CCcceeEEEeecCChhhccccccc
Confidence 799999999999998875 4589999999999998888776532 112333333333332211 2599
Q ss_pred cEEEEccccccCChhHHHHHHHHHHHccCCCEE
Q 002218 796 DIGTCLEVIEHMEEDEASQFGNIVLSSFRPRIL 828 (952)
Q Consensus 796 DVVVcieVIEHL~dD~l~~L~eeI~RvLKPG~L 828 (952)
|+|++..|+||++ +.. .+.+++.++||||..
T Consensus 68 D~V~~~~vl~~l~-~~~-~~l~~~~~~L~pgG~ 98 (99)
T PF08242_consen 68 DLVVASNVLHHLE-DIE-AVLRNIYRLLKPGGI 98 (99)
T ss_dssp SEEEEE-TTS--S--HH-HHHHHHTTT-TSS-E
T ss_pred ceehhhhhHhhhh-hHH-HHHHHHHHHcCCCCC
Confidence 9999999999994 444 445679999999943
No 51
>PRK11873 arsM arsenite S-adenosylmethyltransferase; Reviewed
Probab=99.25 E-value=4.9e-11 Score=126.95 Aligned_cols=108 Identities=19% Similarity=0.206 Sum_probs=86.4
Q ss_pred cCCCCEEEEEcCccchHHHHHhcCCCCCceEEEEeCChHHHHHHHHHHhhhhhcccccCCCCCCCccEEEEEcCccccCC
Q 002218 711 ESCATTLVDFGCGSGSLLDSLLDYPTALEKIVGVDISQKSLSRAAKIIHSKLSKKLDAAVPCTDVKSAVLFDGSITVFDS 790 (952)
Q Consensus 711 ~~k~krVLDIGCGeG~ll~~LAr~g~~~~qVVGVDISeemLe~ArkrLsa~la~~~~~l~Pr~~~~nVtf~qGDa~dLpf 790 (952)
..++.+|||+|||+|..+..+++..++..+|+|+|+++.|++.|+++... .+..++++.++|+.++++
T Consensus 75 ~~~g~~VLDiG~G~G~~~~~~a~~~g~~~~v~gvD~s~~~l~~A~~~~~~------------~g~~~v~~~~~d~~~l~~ 142 (272)
T PRK11873 75 LKPGETVLDLGSGGGFDCFLAARRVGPTGKVIGVDMTPEMLAKARANARK------------AGYTNVEFRLGEIEALPV 142 (272)
T ss_pred CCCCCEEEEeCCCCCHHHHHHHHHhCCCCEEEEECCCHHHHHHHHHHHHH------------cCCCCEEEEEcchhhCCC
Confidence 34678999999999998876665432346899999999999999887542 233578999999999988
Q ss_pred CCCCccEEEEccccccCChhHHHHHHHHHHHccCCC-EEEEEe
Q 002218 791 RLHGFDIGTCLEVIEHMEEDEASQFGNIVLSSFRPR-ILIVST 832 (952)
Q Consensus 791 ~d~sFDVVVcieVIEHL~dD~l~~L~eeI~RvLKPG-~LIIST 832 (952)
.+++||+|++..+++|.+ +....+ +++.++|||| .++++.
T Consensus 143 ~~~~fD~Vi~~~v~~~~~-d~~~~l-~~~~r~LkpGG~l~i~~ 183 (272)
T PRK11873 143 ADNSVDVIISNCVINLSP-DKERVF-KEAFRVLKPGGRFAISD 183 (272)
T ss_pred CCCceeEEEEcCcccCCC-CHHHHH-HHHHHHcCCCcEEEEEE
Confidence 888999999999999987 443444 5799999999 666654
No 52
>PLN02490 MPBQ/MSBQ methyltransferase
Probab=99.25 E-value=1.3e-10 Score=129.63 Aligned_cols=103 Identities=15% Similarity=0.121 Sum_probs=84.3
Q ss_pred CCCEEEEEcCccchHHHHHhcCCCCCceEEEEeCChHHHHHHHHHHhhhhhcccccCCCCCCCccEEEEEcCccccCCCC
Q 002218 713 CATTLVDFGCGSGSLLDSLLDYPTALEKIVGVDISQKSLSRAAKIIHSKLSKKLDAAVPCTDVKSAVLFDGSITVFDSRL 792 (952)
Q Consensus 713 k~krVLDIGCGeG~ll~~LAr~g~~~~qVVGVDISeemLe~ArkrLsa~la~~~~~l~Pr~~~~nVtf~qGDa~dLpf~d 792 (952)
++.+|||||||+|.++..+++.. +..+|+|+|+|++|++.|+++.. ..++++..+|+.++++.+
T Consensus 113 ~~~~VLDLGcGtG~~~l~La~~~-~~~~VtgVD~S~~mL~~A~~k~~---------------~~~i~~i~gD~e~lp~~~ 176 (340)
T PLN02490 113 RNLKVVDVGGGTGFTTLGIVKHV-DAKNVTILDQSPHQLAKAKQKEP---------------LKECKIIEGDAEDLPFPT 176 (340)
T ss_pred CCCEEEEEecCCcHHHHHHHHHC-CCCEEEEEECCHHHHHHHHHhhh---------------ccCCeEEeccHHhCCCCC
Confidence 56799999999999998887753 22689999999999999987532 136789999999998888
Q ss_pred CCccEEEEccccccCChhHHHHHHHHHHHccCCC-EEEEEec
Q 002218 793 HGFDIGTCLEVIEHMEEDEASQFGNIVLSSFRPR-ILIVSTP 833 (952)
Q Consensus 793 ~sFDVVVcieVIEHL~dD~l~~L~eeI~RvLKPG-~LIISTP 833 (952)
+.||+|++..+++|+++.+ ..+ +++.++|||| .+++..+
T Consensus 177 ~sFDvVIs~~~L~~~~d~~-~~L-~e~~rvLkPGG~LvIi~~ 216 (340)
T PLN02490 177 DYADRYVSAGSIEYWPDPQ-RGI-KEAYRVLKIGGKACLIGP 216 (340)
T ss_pred CceeEEEEcChhhhCCCHH-HHH-HHHHHhcCCCcEEEEEEe
Confidence 8999999999999998443 444 6799999999 6666544
No 53
>PRK00216 ubiE ubiquinone/menaquinone biosynthesis methyltransferase; Reviewed
Probab=99.23 E-value=1.4e-10 Score=118.81 Aligned_cols=115 Identities=15% Similarity=0.217 Sum_probs=89.5
Q ss_pred HHHHhhcCCCCEEEEEcCccchHHHHHhcCCCCCceEEEEeCChHHHHHHHHHHhhhhhcccccCCCCCCCccEEEEEcC
Q 002218 705 ALQHIKESCATTLVDFGCGSGSLLDSLLDYPTALEKIVGVDISQKSLSRAAKIIHSKLSKKLDAAVPCTDVKSAVLFDGS 784 (952)
Q Consensus 705 VldlL~~~k~krVLDIGCGeG~ll~~LAr~g~~~~qVVGVDISeemLe~ArkrLsa~la~~~~~l~Pr~~~~nVtf~qGD 784 (952)
+...+...++.+|||+|||+|.++..+++.++...+++|+|+++.+++.+++++... ....++++..+|
T Consensus 43 ~~~~~~~~~~~~vldiG~G~G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~-----------~~~~~~~~~~~d 111 (239)
T PRK00216 43 TIKWLGVRPGDKVLDLACGTGDLAIALAKAVGKTGEVVGLDFSEGMLAVGREKLRDL-----------GLSGNVEFVQGD 111 (239)
T ss_pred HHHHhCCCCCCeEEEeCCCCCHHHHHHHHHcCCCCeEEEEeCCHHHHHHHHHhhccc-----------ccccCeEEEecc
Confidence 344444446689999999999999999887633589999999999999998865321 122478999999
Q ss_pred ccccCCCCCCccEEEEccccccCChhHHHHHHHHHHHccCCC-EEEEEe
Q 002218 785 ITVFDSRLHGFDIGTCLEVIEHMEEDEASQFGNIVLSSFRPR-ILIVST 832 (952)
Q Consensus 785 a~dLpf~d~sFDVVVcieVIEHL~dD~l~~L~eeI~RvLKPG-~LIIST 832 (952)
+.+.++..+.||+|++..+++|+.+ .... .+.+.++|+|| .+++.+
T Consensus 112 ~~~~~~~~~~~D~I~~~~~l~~~~~-~~~~-l~~~~~~L~~gG~li~~~ 158 (239)
T PRK00216 112 AEALPFPDNSFDAVTIAFGLRNVPD-IDKA-LREMYRVLKPGGRLVILE 158 (239)
T ss_pred cccCCCCCCCccEEEEecccccCCC-HHHH-HHHHHHhccCCcEEEEEE
Confidence 9988777788999999999999984 4344 46799999998 555543
No 54
>PRK00121 trmB tRNA (guanine-N(7)-)-methyltransferase; Reviewed
Probab=99.23 E-value=2.1e-11 Score=125.57 Aligned_cols=130 Identities=16% Similarity=0.163 Sum_probs=94.0
Q ss_pred chhHHHHHHHHHHHhhcCCCCEEEEEcCccchHHHHHhcCCCCCceEEEEeCChHHHHHHHHHHhhhhhcccccCCCCCC
Q 002218 695 PPLSKQRVEYALQHIKESCATTLVDFGCGSGSLLDSLLDYPTALEKIVGVDISQKSLSRAAKIIHSKLSKKLDAAVPCTD 774 (952)
Q Consensus 695 PPL~~QR~efVldlL~~~k~krVLDIGCGeG~ll~~LAr~g~~~~qVVGVDISeemLe~ArkrLsa~la~~~~~l~Pr~~ 774 (952)
|++.+.+..+..-+ .. ...+|||+|||+|.++..+++.. +..+|+|||+|+++++.|++++.. .+
T Consensus 24 ~~~~~~~~~~~~~~-~~-~~~~VLDiGcGtG~~~~~la~~~-p~~~v~gVD~s~~~i~~a~~~~~~------------~~ 88 (202)
T PRK00121 24 PRLSPAPLDWAELF-GN-DAPIHLEIGFGKGEFLVEMAKAN-PDINFIGIEVHEPGVGKALKKIEE------------EG 88 (202)
T ss_pred hhhcCCCCCHHHHc-CC-CCCeEEEEccCCCHHHHHHHHHC-CCccEEEEEechHHHHHHHHHHHH------------cC
Confidence 44444444444322 22 56899999999999999998765 347899999999999999887642 23
Q ss_pred CccEEEEEcCc-cccC--CCCCCccEEEEccccccCC------hhHHHHHHHHHHHccCCC-EEEEEecCCchhH
Q 002218 775 VKSAVLFDGSI-TVFD--SRLHGFDIGTCLEVIEHME------EDEASQFGNIVLSSFRPR-ILIVSTPNYEYNA 839 (952)
Q Consensus 775 ~~nVtf~qGDa-~dLp--f~d~sFDVVVcieVIEHL~------dD~l~~L~eeI~RvLKPG-~LIISTPN~efN~ 839 (952)
..+++++++|+ ..++ +..+.||+|++.....+.. ......+.+++.++|||| .+++.+++.++..
T Consensus 89 ~~~v~~~~~d~~~~l~~~~~~~~~D~V~~~~~~p~~~~~~~~~~~~~~~~l~~i~~~LkpgG~l~i~~~~~~~~~ 163 (202)
T PRK00121 89 LTNLRLLCGDAVEVLLDMFPDGSLDRIYLNFPDPWPKKRHHKRRLVQPEFLALYARKLKPGGEIHFATDWEGYAE 163 (202)
T ss_pred CCCEEEEecCHHHHHHHHcCccccceEEEECCCCCCCccccccccCCHHHHHHHHHHcCCCCEEEEEcCCHHHHH
Confidence 35799999999 7666 5677899999875432221 111245567899999998 8888888866553
No 55
>PRK13944 protein-L-isoaspartate O-methyltransferase; Provisional
Probab=99.22 E-value=1.6e-10 Score=119.27 Aligned_cols=113 Identities=14% Similarity=0.131 Sum_probs=87.5
Q ss_pred HHHHHHHhhcCCCCEEEEEcCccchHHHHHhcCCCCCceEEEEeCChHHHHHHHHHHhhhhhcccccCCCCCCCccEEEE
Q 002218 702 VEYALQHIKESCATTLVDFGCGSGSLLDSLLDYPTALEKIVGVDISQKSLSRAAKIIHSKLSKKLDAAVPCTDVKSAVLF 781 (952)
Q Consensus 702 ~efVldlL~~~k~krVLDIGCGeG~ll~~LAr~g~~~~qVVGVDISeemLe~ArkrLsa~la~~~~~l~Pr~~~~nVtf~ 781 (952)
...+.+.+...++.+|||+|||+|.++..+++..+...+|+|+|+++++++.|++++... ....++++.
T Consensus 61 ~~~~~~~l~~~~~~~VLDiG~GsG~~~~~la~~~~~~g~V~~iD~~~~~~~~a~~~l~~~-----------~~~~~v~~~ 129 (205)
T PRK13944 61 VAMMCELIEPRPGMKILEVGTGSGYQAAVCAEAIERRGKVYTVEIVKELAIYAAQNIERL-----------GYWGVVEVY 129 (205)
T ss_pred HHHHHHhcCCCCCCEEEEECcCccHHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHHHc-----------CCCCcEEEE
Confidence 345566666667789999999999999888875423368999999999999998877531 112358999
Q ss_pred EcCccccCCCCCCccEEEEccccccCChhHHHHHHHHHHHccCCC-EEEEEec
Q 002218 782 DGSITVFDSRLHGFDIGTCLEVIEHMEEDEASQFGNIVLSSFRPR-ILIVSTP 833 (952)
Q Consensus 782 qGDa~dLpf~d~sFDVVVcieVIEHL~dD~l~~L~eeI~RvLKPG-~LIISTP 833 (952)
.+|+.+.......||+|++..+++|++ +++.+.|+|| .++++..
T Consensus 130 ~~d~~~~~~~~~~fD~Ii~~~~~~~~~--------~~l~~~L~~gG~lvi~~~ 174 (205)
T PRK13944 130 HGDGKRGLEKHAPFDAIIVTAAASTIP--------SALVRQLKDGGVLVIPVE 174 (205)
T ss_pred ECCcccCCccCCCccEEEEccCcchhh--------HHHHHhcCcCcEEEEEEc
Confidence 999987555567899999999998887 2477899999 7766554
No 56
>TIGR00080 pimt protein-L-isoaspartate(D-aspartate) O-methyltransferase. Among the prokaryotes, the gene name is pcm. Among eukaryotes, pimt.
Probab=99.21 E-value=1.6e-10 Score=119.64 Aligned_cols=113 Identities=12% Similarity=0.148 Sum_probs=89.5
Q ss_pred HHHHHHHHHhhcCCCCEEEEEcCccchHHHHHhcCCCCCceEEEEeCChHHHHHHHHHHhhhhhcccccCCCCCCCccEE
Q 002218 700 QRVEYALQHIKESCATTLVDFGCGSGSLLDSLLDYPTALEKIVGVDISQKSLSRAAKIIHSKLSKKLDAAVPCTDVKSAV 779 (952)
Q Consensus 700 QR~efVldlL~~~k~krVLDIGCGeG~ll~~LAr~g~~~~qVVGVDISeemLe~ArkrLsa~la~~~~~l~Pr~~~~nVt 779 (952)
..+..+.+.+...++.+|||||||+|.++..|++..++..+|+|+|+++++++.|++++.. .+..+++
T Consensus 64 ~~~~~~~~~l~~~~~~~VLDiG~GsG~~a~~la~~~~~~g~V~~vD~~~~~~~~A~~~~~~------------~g~~~v~ 131 (215)
T TIGR00080 64 HMVAMMTELLELKPGMKVLEIGTGSGYQAAVLAEIVGRDGLVVSIERIPELAEKAERRLRK------------LGLDNVI 131 (215)
T ss_pred HHHHHHHHHhCCCCcCEEEEECCCccHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHH------------CCCCCeE
Confidence 3445666777777889999999999999999988753335799999999999999988753 2345899
Q ss_pred EEEcCccccCCCCCCccEEEEccccccCChhHHHHHHHHHHHccCCC-EEEEEe
Q 002218 780 LFDGSITVFDSRLHGFDIGTCLEVIEHMEEDEASQFGNIVLSSFRPR-ILIVST 832 (952)
Q Consensus 780 f~qGDa~dLpf~d~sFDVVVcieVIEHL~dD~l~~L~eeI~RvLKPG-~LIIST 832 (952)
+.++|+.+.......||+|++.....+++ +.+.+.|+|| .+++..
T Consensus 132 ~~~~d~~~~~~~~~~fD~Ii~~~~~~~~~--------~~~~~~L~~gG~lv~~~ 177 (215)
T TIGR00080 132 VIVGDGTQGWEPLAPYDRIYVTAAGPKIP--------EALIDQLKEGGILVMPV 177 (215)
T ss_pred EEECCcccCCcccCCCCEEEEcCCccccc--------HHHHHhcCcCcEEEEEE
Confidence 99999987655557899999988877776 3467889999 666654
No 57
>PLN02336 phosphoethanolamine N-methyltransferase
Probab=99.20 E-value=9.2e-11 Score=134.37 Aligned_cols=111 Identities=10% Similarity=0.182 Sum_probs=90.6
Q ss_pred HHHHHHhhcCCCCEEEEEcCccchHHHHHhcCCCCCceEEEEeCChHHHHHHHHHHhhhhhcccccCCCCCCCccEEEEE
Q 002218 703 EYALQHIKESCATTLVDFGCGSGSLLDSLLDYPTALEKIVGVDISQKSLSRAAKIIHSKLSKKLDAAVPCTDVKSAVLFD 782 (952)
Q Consensus 703 efVldlL~~~k~krVLDIGCGeG~ll~~LAr~g~~~~qVVGVDISeemLe~ArkrLsa~la~~~~~l~Pr~~~~nVtf~q 782 (952)
..+.+.+...++.+|||||||+|.++..|++.+ .+|+|+|+++.|++.+++.. ....++++++
T Consensus 27 ~~il~~l~~~~~~~vLDlGcG~G~~~~~la~~~---~~v~giD~s~~~l~~a~~~~--------------~~~~~i~~~~ 89 (475)
T PLN02336 27 PEILSLLPPYEGKSVLELGAGIGRFTGELAKKA---GQVIALDFIESVIKKNESIN--------------GHYKNVKFMC 89 (475)
T ss_pred hHHHhhcCccCCCEEEEeCCCcCHHHHHHHhhC---CEEEEEeCCHHHHHHHHHHh--------------ccCCceEEEE
Confidence 455566665567899999999999999999886 69999999999999875431 1234789999
Q ss_pred cCcc--ccCCCCCCccEEEEccccccCChhHHHHHHHHHHHccCCC-EEEE
Q 002218 783 GSIT--VFDSRLHGFDIGTCLEVIEHMEEDEASQFGNIVLSSFRPR-ILIV 830 (952)
Q Consensus 783 GDa~--dLpf~d~sFDVVVcieVIEHL~dD~l~~L~eeI~RvLKPG-~LII 830 (952)
+|+. .++++.++||+|+|..+++|++++....+.+++.++|||| .+++
T Consensus 90 ~d~~~~~~~~~~~~fD~I~~~~~l~~l~~~~~~~~l~~~~r~Lk~gG~l~~ 140 (475)
T PLN02336 90 ADVTSPDLNISDGSVDLIFSNWLLMYLSDKEVENLAERMVKWLKVGGYIFF 140 (475)
T ss_pred ecccccccCCCCCCEEEEehhhhHHhCCHHHHHHHHHHHHHhcCCCeEEEE
Confidence 9996 3566678999999999999999776677778899999999 5555
No 58
>KOG1540 consensus Ubiquinone biosynthesis methyltransferase COQ5 [Coenzyme transport and metabolism]
Probab=99.19 E-value=2.4e-10 Score=122.11 Aligned_cols=130 Identities=12% Similarity=0.109 Sum_probs=99.4
Q ss_pred HHHHHHHhhcCCCCEEEEEcCccchHHHHHhcCCCCC-----ceEEEEeCChHHHHHHHHHHhhhhhcccccCCCCCCCc
Q 002218 702 VEYALQHIKESCATTLVDFGCGSGSLLDSLLDYPTAL-----EKIVGVDISQKSLSRAAKIIHSKLSKKLDAAVPCTDVK 776 (952)
Q Consensus 702 ~efVldlL~~~k~krVLDIGCGeG~ll~~LAr~g~~~-----~qVVGVDISeemLe~ArkrLsa~la~~~~~l~Pr~~~~ 776 (952)
-+..+..+.+.++.++||++||+|..+..+.++-... .+|+++||+++||..++++..+. . -....
T Consensus 89 Kd~~v~~L~p~~~m~~lDvaGGTGDiaFril~~v~s~~~~~~~~V~v~Dinp~mL~vgkqRa~~~--~-------l~~~~ 159 (296)
T KOG1540|consen 89 KDMFVSKLGPGKGMKVLDVAGGTGDIAFRILRHVKSQFGDRESKVTVLDINPHMLAVGKQRAKKR--P-------LKASS 159 (296)
T ss_pred HHHhhhccCCCCCCeEEEecCCcchhHHHHHHhhccccCCCCceEEEEeCCHHHHHHHHHHHhhc--C-------CCcCC
Confidence 3444555666778999999999999999888765322 78999999999999999875321 1 11223
Q ss_pred cEEEEEcCccccCCCCCCccEEEEccccccCChhHHHHHHHHHHHccCCC-EEEEEecCCchhHHHH
Q 002218 777 SAVLFDGSITVFDSRLHGFDIGTCLEVIEHMEEDEASQFGNIVLSSFRPR-ILIVSTPNYEYNAILQ 842 (952)
Q Consensus 777 nVtf~qGDa~dLpf~d~sFDVVVcieVIEHL~dD~l~~L~eeI~RvLKPG-~LIISTPN~efN~lf~ 842 (952)
.+.|+.+|++++||++.+||+.++.+.|.... +..+.+ ++++|+|||| .+.+-.-+...|+.+.
T Consensus 160 ~~~w~~~dAE~LpFdd~s~D~yTiafGIRN~t-h~~k~l-~EAYRVLKpGGrf~cLeFskv~~~~l~ 224 (296)
T KOG1540|consen 160 RVEWVEGDAEDLPFDDDSFDAYTIAFGIRNVT-HIQKAL-REAYRVLKPGGRFSCLEFSKVENEPLK 224 (296)
T ss_pred ceEEEeCCcccCCCCCCcceeEEEecceecCC-CHHHHH-HHHHHhcCCCcEEEEEEccccccHHHH
Confidence 59999999999999999999999999999999 554555 4699999999 6665554444444333
No 59
>TIGR01934 MenG_MenH_UbiE ubiquinone/menaquinone biosynthesis methyltransferases. Note that a number of non-orthologous genes which are members of pfam03737 have been erroneously annotated as MenG methyltransferases.
Probab=99.19 E-value=3.1e-10 Score=115.11 Aligned_cols=114 Identities=18% Similarity=0.197 Sum_probs=89.9
Q ss_pred HHHHHHhhcCCCCEEEEEcCccchHHHHHhcCCCCCceEEEEeCChHHHHHHHHHHhhhhhcccccCCCCCCCccEEEEE
Q 002218 703 EYALQHIKESCATTLVDFGCGSGSLLDSLLDYPTALEKIVGVDISQKSLSRAAKIIHSKLSKKLDAAVPCTDVKSAVLFD 782 (952)
Q Consensus 703 efVldlL~~~k~krVLDIGCGeG~ll~~LAr~g~~~~qVVGVDISeemLe~ArkrLsa~la~~~~~l~Pr~~~~nVtf~q 782 (952)
..+.+.+...++.+|||+|||.|.++..+++..+...+++|+|+++.+++.++++.. ...++++..
T Consensus 29 ~~~~~~~~~~~~~~vldiG~G~G~~~~~~~~~~~~~~~~~~iD~~~~~~~~~~~~~~--------------~~~~i~~~~ 94 (223)
T TIGR01934 29 RRAVKLIGVFKGQKVLDVACGTGDLAIELAKSAPDRGKVTGVDFSSEMLEVAKKKSE--------------LPLNIEFIQ 94 (223)
T ss_pred HHHHHHhccCCCCeEEEeCCCCChhHHHHHHhcCCCceEEEEECCHHHHHHHHHHhc--------------cCCCceEEe
Confidence 344455555577899999999999999998877322589999999999999987642 123688999
Q ss_pred cCccccCCCCCCccEEEEccccccCChhHHHHHHHHHHHccCCC-EEEEEe
Q 002218 783 GSITVFDSRLHGFDIGTCLEVIEHMEEDEASQFGNIVLSSFRPR-ILIVST 832 (952)
Q Consensus 783 GDa~dLpf~d~sFDVVVcieVIEHL~dD~l~~L~eeI~RvLKPG-~LIIST 832 (952)
+|+.+.++..+.||+|++..+++|+.+ .. .+.+.+.+.|+|| .+++..
T Consensus 95 ~d~~~~~~~~~~~D~i~~~~~~~~~~~-~~-~~l~~~~~~L~~gG~l~~~~ 143 (223)
T TIGR01934 95 ADAEALPFEDNSFDAVTIAFGLRNVTD-IQ-KALREMYRVLKPGGRLVILE 143 (223)
T ss_pred cchhcCCCCCCcEEEEEEeeeeCCccc-HH-HHHHHHHHHcCCCcEEEEEE
Confidence 999998877778999999999999984 43 4456799999999 665543
No 60
>PRK13942 protein-L-isoaspartate O-methyltransferase; Provisional
Probab=99.19 E-value=2.1e-10 Score=119.20 Aligned_cols=114 Identities=11% Similarity=0.123 Sum_probs=90.1
Q ss_pred HHHHHHHHHHhhcCCCCEEEEEcCccchHHHHHhcCCCCCceEEEEeCChHHHHHHHHHHhhhhhcccccCCCCCCCccE
Q 002218 699 KQRVEYALQHIKESCATTLVDFGCGSGSLLDSLLDYPTALEKIVGVDISQKSLSRAAKIIHSKLSKKLDAAVPCTDVKSA 778 (952)
Q Consensus 699 ~QR~efVldlL~~~k~krVLDIGCGeG~ll~~LAr~g~~~~qVVGVDISeemLe~ArkrLsa~la~~~~~l~Pr~~~~nV 778 (952)
+..+.++.+.+...++.+|||||||+|+++..+++..++..+|+|+|+++++++.|++++.. .+..++
T Consensus 62 p~~~~~~~~~l~~~~g~~VLdIG~GsG~~t~~la~~~~~~~~V~~vE~~~~~~~~a~~~l~~------------~g~~~v 129 (212)
T PRK13942 62 IHMVAIMCELLDLKEGMKVLEIGTGSGYHAAVVAEIVGKSGKVVTIERIPELAEKAKKTLKK------------LGYDNV 129 (212)
T ss_pred HHHHHHHHHHcCCCCcCEEEEECCcccHHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHHH------------cCCCCe
Confidence 34445666777777889999999999999998887643446999999999999999988753 234579
Q ss_pred EEEEcCccccCCCCCCccEEEEccccccCChhHHHHHHHHHHHccCCC-EEEEEe
Q 002218 779 VLFDGSITVFDSRLHGFDIGTCLEVIEHMEEDEASQFGNIVLSSFRPR-ILIVST 832 (952)
Q Consensus 779 tf~qGDa~dLpf~d~sFDVVVcieVIEHL~dD~l~~L~eeI~RvLKPG-~LIIST 832 (952)
++.++|+.........||+|++...+++++ +.+.+.|||| .+++..
T Consensus 130 ~~~~gd~~~~~~~~~~fD~I~~~~~~~~~~--------~~l~~~LkpgG~lvi~~ 176 (212)
T PRK13942 130 EVIVGDGTLGYEENAPYDRIYVTAAGPDIP--------KPLIEQLKDGGIMVIPV 176 (212)
T ss_pred EEEECCcccCCCcCCCcCEEEECCCcccch--------HHHHHhhCCCcEEEEEE
Confidence 999999987666678899999988887775 2467789999 666644
No 61
>TIGR00138 gidB 16S rRNA methyltransferase GidB. GidB (glucose-inhibited division protein B) appears to be present and in a single copy in nearly all complete eubacterial genomes. It is missing only from some obligate intracellular species of various lineages (Chlamydiae, Ehrlichia, Wolbachia, Anaplasma, Buchnera, etc.). GidB shows a methytransferase fold in its the crystal structure, and acts as a 7-methylguanosine (m(7)G) methyltransferase, apparently specific to 16S rRNA.
Probab=99.17 E-value=3e-10 Score=115.90 Aligned_cols=103 Identities=13% Similarity=0.153 Sum_probs=79.0
Q ss_pred cCCCCEEEEEcCccchHHHHHhcCCCCCceEEEEeCChHHHHHHHHHHhhhhhcccccCCCCCCCccEEEEEcCccccCC
Q 002218 711 ESCATTLVDFGCGSGSLLDSLLDYPTALEKIVGVDISQKSLSRAAKIIHSKLSKKLDAAVPCTDVKSAVLFDGSITVFDS 790 (952)
Q Consensus 711 ~~k~krVLDIGCGeG~ll~~LAr~g~~~~qVVGVDISeemLe~ArkrLsa~la~~~~~l~Pr~~~~nVtf~qGDa~dLpf 790 (952)
..++.+|||+|||+|.++..++..+ +..+|+|||+|+.|++.++++.+. .+..+++++++|+.++.
T Consensus 40 ~~~~~~vLDiGcGtG~~s~~la~~~-~~~~V~~iD~s~~~~~~a~~~~~~------------~~~~~i~~i~~d~~~~~- 105 (181)
T TIGR00138 40 YLDGKKVIDIGSGAGFPGIPLAIAR-PELKLTLLESNHKKVAFLREVKAE------------LGLNNVEIVNGRAEDFQ- 105 (181)
T ss_pred hcCCCeEEEecCCCCccHHHHHHHC-CCCeEEEEeCcHHHHHHHHHHHHH------------hCCCCeEEEecchhhcc-
Confidence 3457899999999999999887655 347899999999999999876542 23347999999998874
Q ss_pred CCCCccEEEEccccccCChhHHHHHHHHHHHccCCC-EEEEEec
Q 002218 791 RLHGFDIGTCLEVIEHMEEDEASQFGNIVLSSFRPR-ILIVSTP 833 (952)
Q Consensus 791 ~d~sFDVVVcieVIEHL~dD~l~~L~eeI~RvLKPG-~LIISTP 833 (952)
..+.||+|++.. +++++ .+.+.+.++|+|| .+++...
T Consensus 106 ~~~~fD~I~s~~-~~~~~-----~~~~~~~~~LkpgG~lvi~~~ 143 (181)
T TIGR00138 106 HEEQFDVITSRA-LASLN-----VLLELTLNLLKVGGYFLAYKG 143 (181)
T ss_pred ccCCccEEEehh-hhCHH-----HHHHHHHHhcCCCCEEEEEcC
Confidence 357899999876 44443 3445689999999 5555543
No 62
>smart00138 MeTrc Methyltransferase, chemotaxis proteins. Methylates methyl-accepting chemotaxis proteins to form gamma-glutamyl methyl ester residues.
Probab=99.17 E-value=1.9e-10 Score=123.70 Aligned_cols=119 Identities=19% Similarity=0.217 Sum_probs=83.9
Q ss_pred CCCEEEEEcCccch----HHHHHhcCCC----CCceEEEEeCChHHHHHHHHHHhhh--hhcc-----cccCCCCC----
Q 002218 713 CATTLVDFGCGSGS----LLDSLLDYPT----ALEKIVGVDISQKSLSRAAKIIHSK--LSKK-----LDAAVPCT---- 773 (952)
Q Consensus 713 k~krVLDIGCGeG~----ll~~LAr~g~----~~~qVVGVDISeemLe~ArkrLsa~--la~~-----~~~l~Pr~---- 773 (952)
++.+|+|+|||+|. ++..|++.++ ...+|+|+|+|+.||+.|++..... .... ..+-.+..
T Consensus 99 ~~~ri~d~GCgtGee~YslA~~l~e~~~~~~~~~~~I~g~Dis~~~L~~Ar~~~y~~~~~~~~~~~~~~~yf~~~~~~~~ 178 (264)
T smart00138 99 RRVRIWSAGCSTGEEPYSLAMLLAETLPKAREPDVKILATDIDLKALEKARAGIYPERELEDLPKALLARYFSRVEDKYR 178 (264)
T ss_pred CCEEEEeccccCChHHHHHHHHHHHHhhhcCCCCeEEEEEECCHHHHHHHHcCCCCHHHHhcCCHHHHhhhEEeCCCeEE
Confidence 45699999999996 4444554321 1368999999999999998643110 0000 00000000
Q ss_pred ----CCccEEEEEcCccccCCCCCCccEEEEccccccCChhHHHHHHHHHHHccCCC-EEEEE
Q 002218 774 ----DVKSAVLFDGSITVFDSRLHGFDIGTCLEVIEHMEEDEASQFGNIVLSSFRPR-ILIVS 831 (952)
Q Consensus 774 ----~~~nVtf~qGDa~dLpf~d~sFDVVVcieVIEHL~dD~l~~L~eeI~RvLKPG-~LIIS 831 (952)
-..+|+|.++|+.+.++..+.||+|+|..+++|++++....+.+++.+.|+|| .+++.
T Consensus 179 v~~~ir~~V~F~~~dl~~~~~~~~~fD~I~crnvl~yf~~~~~~~~l~~l~~~L~pGG~L~lg 241 (264)
T smart00138 179 VKPELKERVRFAKHNLLAESPPLGDFDLIFCRNVLIYFDEPTQRKLLNRFAEALKPGGYLFLG 241 (264)
T ss_pred EChHHhCcCEEeeccCCCCCCccCCCCEEEechhHHhCCHHHHHHHHHHHHHHhCCCeEEEEE
Confidence 01368999999999887788999999999999999777667777899999999 55553
No 63
>KOG1271 consensus Methyltransferases [General function prediction only]
Probab=99.16 E-value=7.7e-11 Score=120.74 Aligned_cols=168 Identities=20% Similarity=0.216 Sum_probs=122.9
Q ss_pred hcccccccccceeeeecc-cCCChhhhhhhhcCCchhHHHHHHHHHHHhh---cC-CCCEEEEEcCccchHHHHHhcCCC
Q 002218 662 SLLSSRACCLEYHITLLR-VTEPPEDRMEQALFSPPLSKQRVEYALQHIK---ES-CATTLVDFGCGSGSLLDSLLDYPT 736 (952)
Q Consensus 662 SlLs~d~~~LEyyI~LL~-v~ep~EeRye~~~F~PPL~~QR~efVldlL~---~~-k~krVLDIGCGeG~ll~~LAr~g~ 736 (952)
|.|..+..|.+-|-..+. ..++..+ ...+|........++|+.+... .. ...+|||+|||.|.++..|++.+
T Consensus 13 S~LGtK~yWD~~Y~~El~Nfr~hgd~--GEvWFg~~ae~riv~wl~d~~~~~rv~~~A~~VlDLGtGNG~~L~~L~~eg- 89 (227)
T KOG1271|consen 13 SKLGTKSYWDAAYELELTNFREHGDE--GEVWFGEDAEERIVDWLKDLIVISRVSKQADRVLDLGTGNGHLLFQLAKEG- 89 (227)
T ss_pred cccchHHHHHHHHHHHHhhcccCCCc--cceecCCcHHHHHHHHHHhhhhhhhhcccccceeeccCCchHHHHHHHHhc-
Confidence 567788888887766554 3333321 2345665566666778877665 22 33499999999999999999987
Q ss_pred CCceEEEEeCChHHHHHHHHHHhhhhhcccccCCCCCCCcc-EEEEEcCccccCCCCCCccEEEEccccccCCh------
Q 002218 737 ALEKIVGVDISQKSLSRAAKIIHSKLSKKLDAAVPCTDVKS-AVLFDGSITVFDSRLHGFDIGTCLEVIEHMEE------ 809 (952)
Q Consensus 737 ~~~qVVGVDISeemLe~ArkrLsa~la~~~~~l~Pr~~~~n-Vtf~qGDa~dLpf~d~sFDVVVcieVIEHL~d------ 809 (952)
-...++|||.|+++++.|+.... +.+..+ |+|.+.|+.+.++..+.||+|.--+.+..+..
T Consensus 90 f~~~L~GvDYs~~AV~LA~niAe------------~~~~~n~I~f~q~DI~~~~~~~~qfdlvlDKGT~DAisLs~d~~~ 157 (227)
T KOG1271|consen 90 FQSKLTGVDYSEKAVELAQNIAE------------RDGFSNEIRFQQLDITDPDFLSGQFDLVLDKGTLDAISLSPDGPV 157 (227)
T ss_pred CCCCccccccCHHHHHHHHHHHH------------hcCCCcceeEEEeeccCCcccccceeEEeecCceeeeecCCCCcc
Confidence 33569999999999999975433 233334 99999999998888899999998777665531
Q ss_pred hHHHHHHHHHHHccCCC-EEEEEecCCchhHHHHhh
Q 002218 810 DEASQFGNIVLSSFRPR-ILIVSTPNYEYNAILQKS 844 (952)
Q Consensus 810 D~l~~L~eeI~RvLKPG-~LIISTPN~efN~lf~~L 844 (952)
..+..+...+.+.|+|| +++|+.-|+....+...+
T Consensus 158 ~r~~~Y~d~v~~ll~~~gifvItSCN~T~dELv~~f 193 (227)
T KOG1271|consen 158 GRLVVYLDSVEKLLSPGGIFVITSCNFTKDELVEEF 193 (227)
T ss_pred cceeeehhhHhhccCCCcEEEEEecCccHHHHHHHH
Confidence 22355667789999999 999999998877665543
No 64
>PRK13255 thiopurine S-methyltransferase; Reviewed
Probab=99.16 E-value=3.7e-10 Score=118.53 Aligned_cols=115 Identities=10% Similarity=0.108 Sum_probs=87.8
Q ss_pred CCCEEEEEcCccchHHHHHhcCCCCCceEEEEeCChHHHHHHHHHHhhhhhcccccCC--CCCCCccEEEEEcCccccCC
Q 002218 713 CATTLVDFGCGSGSLLDSLLDYPTALEKIVGVDISQKSLSRAAKIIHSKLSKKLDAAV--PCTDVKSAVLFDGSITVFDS 790 (952)
Q Consensus 713 k~krVLDIGCGeG~ll~~LAr~g~~~~qVVGVDISeemLe~ArkrLsa~la~~~~~l~--Pr~~~~nVtf~qGDa~dLpf 790 (952)
++.+|||+|||.|..+.+|+++| .+|+|||+|+.+++.+.+... +........ .+....+|+++++|+.+++.
T Consensus 37 ~~~rvL~~gCG~G~da~~LA~~G---~~V~avD~s~~Ai~~~~~~~~--l~~~~~~~~~~~~~~~~~v~~~~~D~~~l~~ 111 (218)
T PRK13255 37 AGSRVLVPLCGKSLDMLWLAEQG---HEVLGVELSELAVEQFFAENG--LTPQTRQSGEFEHYQAGEITIYCGDFFALTA 111 (218)
T ss_pred CCCeEEEeCCCChHhHHHHHhCC---CeEEEEccCHHHHHHHHHHcC--CCccccccccccccccCceEEEECcccCCCc
Confidence 56799999999999999999998 899999999999998743211 100000000 01123579999999998865
Q ss_pred C-CCCccEEEEccccccCChhHHHHHHHHHHHccCCC-EEEEEe
Q 002218 791 R-LHGFDIGTCLEVIEHMEEDEASQFGNIVLSSFRPR-ILIVST 832 (952)
Q Consensus 791 ~-d~sFDVVVcieVIEHL~dD~l~~L~eeI~RvLKPG-~LIIST 832 (952)
. ...||.|+-..+++|++++.+..+.+.+.++|+|| .+++.+
T Consensus 112 ~~~~~fd~v~D~~~~~~l~~~~R~~~~~~l~~lL~pgG~~~l~~ 155 (218)
T PRK13255 112 ADLADVDAVYDRAALIALPEEMRERYVQQLAALLPAGCRGLLVT 155 (218)
T ss_pred ccCCCeeEEEehHhHhhCCHHHHHHHHHHHHHHcCCCCeEEEEE
Confidence 4 35899999999999999998899999999999999 444433
No 65
>PRK00107 gidB 16S rRNA methyltransferase GidB; Reviewed
Probab=99.14 E-value=5.1e-10 Score=115.16 Aligned_cols=99 Identities=19% Similarity=0.217 Sum_probs=78.2
Q ss_pred CCCEEEEEcCccchHHHHHhcCCCCCceEEEEeCChHHHHHHHHHHhhhhhcccccCCCCCCCccEEEEEcCccccCCCC
Q 002218 713 CATTLVDFGCGSGSLLDSLLDYPTALEKIVGVDISQKSLSRAAKIIHSKLSKKLDAAVPCTDVKSAVLFDGSITVFDSRL 792 (952)
Q Consensus 713 k~krVLDIGCGeG~ll~~LAr~g~~~~qVVGVDISeemLe~ArkrLsa~la~~~~~l~Pr~~~~nVtf~qGDa~dLpf~d 792 (952)
++.+|||+|||+|.++..+++.. +..+|+|+|++++|++.|+++... .+..++++.++|+.+++. .
T Consensus 45 ~g~~VLDiGcGtG~~al~la~~~-~~~~V~giD~s~~~l~~A~~~~~~------------~~l~~i~~~~~d~~~~~~-~ 110 (187)
T PRK00107 45 GGERVLDVGSGAGFPGIPLAIAR-PELKVTLVDSLGKKIAFLREVAAE------------LGLKNVTVVHGRAEEFGQ-E 110 (187)
T ss_pred CCCeEEEEcCCCCHHHHHHHHHC-CCCeEEEEeCcHHHHHHHHHHHHH------------cCCCCEEEEeccHhhCCC-C
Confidence 37899999999999999888644 347999999999999999887653 233469999999999876 6
Q ss_pred CCccEEEEccccccCChhHHHHHHHHHHHccCCC-EEEEE
Q 002218 793 HGFDIGTCLEVIEHMEEDEASQFGNIVLSSFRPR-ILIVS 831 (952)
Q Consensus 793 ~sFDVVVcieVIEHL~dD~l~~L~eeI~RvLKPG-~LIIS 831 (952)
++||+|++... . ....+.+.+.++|||| .+++.
T Consensus 111 ~~fDlV~~~~~-~-----~~~~~l~~~~~~LkpGG~lv~~ 144 (187)
T PRK00107 111 EKFDVVTSRAV-A-----SLSDLVELCLPLLKPGGRFLAL 144 (187)
T ss_pred CCccEEEEccc-c-----CHHHHHHHHHHhcCCCeEEEEE
Confidence 78999999753 2 1235556799999999 55544
No 66
>PF08003 Methyltransf_9: Protein of unknown function (DUF1698); InterPro: IPR010017 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. This entry represents a set of bacterial AdoMet-dependent tRNA (mo5U34)-methyltransferases. These enzymes catalyse the conversion of 5-hydroxyuridine (ho5U) to 5-methoxyuridine (mo5U) at the wobble position (34) of tRNA []. The 5-methoxyuridine is subsequently converted to uridine-5-oxyacetic acid, a modified nucleoside that is apparently necessary for the efficient decoding of G-ending Pro, Ala, and Val codons in these organisms [].; GO: 0016300 tRNA (uracil) methyltransferase activity, 0002098 tRNA wobble uridine modification
Probab=99.12 E-value=4.9e-10 Score=122.71 Aligned_cols=166 Identities=17% Similarity=0.232 Sum_probs=112.7
Q ss_pred HHHHHHHHhhcCCCCEEEEEcCccchHHHHHhcCCCCCceEEEEeCChHHHHHHHHHHhhhhhcccccCCCCCCCccEEE
Q 002218 701 RVEYALQHIKESCATTLVDFGCGSGSLLDSLLDYPTALEKIVGVDISQKSLSRAAKIIHSKLSKKLDAAVPCTDVKSAVL 780 (952)
Q Consensus 701 R~efVldlL~~~k~krVLDIGCGeG~ll~~LAr~g~~~~qVVGVDISeemLe~ArkrLsa~la~~~~~l~Pr~~~~nVtf 780 (952)
..+.+...+....+++|||||||+|+++..|++.|+ ..|+|||.+...+-..+. ++..+ +....+.+
T Consensus 103 KW~rl~p~l~~L~gk~VLDIGC~nGY~~frM~~~GA--~~ViGiDP~~lf~~QF~~-i~~~l----------g~~~~~~~ 169 (315)
T PF08003_consen 103 KWDRLLPHLPDLKGKRVLDIGCNNGYYSFRMLGRGA--KSVIGIDPSPLFYLQFEA-IKHFL----------GQDPPVFE 169 (315)
T ss_pred hHHHHHhhhCCcCCCEEEEecCCCcHHHHHHhhcCC--CEEEEECCChHHHHHHHH-HHHHh----------CCCccEEE
Confidence 455577777788999999999999999999999985 789999999987766532 11111 11123444
Q ss_pred EEcCccccCCCCCCccEEEEccccccCChhHHHHHHHHHHHccCCC-EEEEEecCCchhHHHHhhccCccCCCCcchhhh
Q 002218 781 FDGSITVFDSRLHGFDIGTCLEVIEHMEEDEASQFGNIVLSSFRPR-ILIVSTPNYEYNAILQKSSSTIQEDDPDEKTQL 859 (952)
Q Consensus 781 ~qGDa~dLpf~d~sFDVVVcieVIEHL~dD~l~~L~eeI~RvLKPG-~LIISTPN~efN~lf~~L~~~ta~eYPde~~g~ 859 (952)
....+++++. .+.||+|+|.+||.|.. ++...+. ++...|+|| .+|+.|--.+-..- ..+++ ...|
T Consensus 170 lplgvE~Lp~-~~~FDtVF~MGVLYHrr-~Pl~~L~-~Lk~~L~~gGeLvLETlvi~g~~~-~~L~P--~~rY------- 236 (315)
T PF08003_consen 170 LPLGVEDLPN-LGAFDTVFSMGVLYHRR-SPLDHLK-QLKDSLRPGGELVLETLVIDGDEN-TVLVP--EDRY------- 236 (315)
T ss_pred cCcchhhccc-cCCcCEEEEeeehhccC-CHHHHHH-HHHHhhCCCCEEEEEEeeecCCCc-eEEcc--CCcc-------
Confidence 4457788887 78999999999999999 6666765 599999998 88876653221110 01111 0011
Q ss_pred ccccccCCCCccccCHHHHHHHHHHHHHHcCc-EEEEEeecC
Q 002218 860 QSCKFRNHDHKFEWTRDQFNCWATELAARHNY-SVEFSGVGG 900 (952)
Q Consensus 860 ~~~~fRh~DHkFEWTReEFqsWae~La~q~GY-sVefsGVG~ 900 (952)
..+ ..-.|--|...+..|++ +.|| .|++..+..
T Consensus 237 --a~m--~nv~FiPs~~~L~~wl~----r~gF~~v~~v~~~~ 270 (315)
T PF08003_consen 237 --AKM--RNVWFIPSVAALKNWLE----RAGFKDVRCVDVSP 270 (315)
T ss_pred --cCC--CceEEeCCHHHHHHHHH----HcCCceEEEecCcc
Confidence 111 22346679999999854 5677 556666554
No 67
>PRK08287 cobalt-precorrin-6Y C(15)-methyltransferase; Validated
Probab=99.12 E-value=7.9e-10 Score=111.77 Aligned_cols=119 Identities=13% Similarity=0.108 Sum_probs=88.3
Q ss_pred CchhHHHHHHHHHHHhhcCCCCEEEEEcCccchHHHHHhcCCCCCceEEEEeCChHHHHHHHHHHhhhhhcccccCCCCC
Q 002218 694 SPPLSKQRVEYALQHIKESCATTLVDFGCGSGSLLDSLLDYPTALEKIVGVDISQKSLSRAAKIIHSKLSKKLDAAVPCT 773 (952)
Q Consensus 694 ~PPL~~QR~efVldlL~~~k~krVLDIGCGeG~ll~~LAr~g~~~~qVVGVDISeemLe~ArkrLsa~la~~~~~l~Pr~ 773 (952)
.|...+.-+..+.+.+...++.+|||+|||+|.++..+++.+ +..+|+|+|+++.+++.|+++... .
T Consensus 12 ~~~~~~~~r~~~~~~l~~~~~~~vLDiG~G~G~~~~~la~~~-~~~~v~~vD~s~~~~~~a~~n~~~------------~ 78 (187)
T PRK08287 12 VPMTKEEVRALALSKLELHRAKHLIDVGAGTGSVSIEAALQF-PSLQVTAIERNPDALRLIKENRQR------------F 78 (187)
T ss_pred CCCchHHHHHHHHHhcCCCCCCEEEEECCcCCHHHHHHHHHC-CCCEEEEEECCHHHHHHHHHHHHH------------h
Confidence 344444445566677776678899999999999999998875 347999999999999999887642 1
Q ss_pred CCccEEEEEcCccccCCCCCCccEEEEccccccCChhHHHHHHHHHHHccCCC-EEEEEe
Q 002218 774 DVKSAVLFDGSITVFDSRLHGFDIGTCLEVIEHMEEDEASQFGNIVLSSFRPR-ILIVST 832 (952)
Q Consensus 774 ~~~nVtf~qGDa~dLpf~d~sFDVVVcieVIEHL~dD~l~~L~eeI~RvLKPG-~LIIST 832 (952)
+..++++..+|+.. +. ...||+|++....+++. .+.+.+.++|+|| .+++..
T Consensus 79 ~~~~i~~~~~d~~~-~~-~~~~D~v~~~~~~~~~~-----~~l~~~~~~Lk~gG~lv~~~ 131 (187)
T PRK08287 79 GCGNIDIIPGEAPI-EL-PGKADAIFIGGSGGNLT-----AIIDWSLAHLHPGGRLVLTF 131 (187)
T ss_pred CCCCeEEEecCchh-hc-CcCCCEEEECCCccCHH-----HHHHHHHHhcCCCeEEEEEE
Confidence 23468999998743 22 35799999987665543 3445789999999 666643
No 68
>PRK06922 hypothetical protein; Provisional
Probab=99.10 E-value=5.7e-10 Score=132.38 Aligned_cols=109 Identities=17% Similarity=0.249 Sum_probs=86.5
Q ss_pred hcCCCCEEEEEcCccchHHHHHhcCCCCCceEEEEeCChHHHHHHHHHHhhhhhcccccCCCCCCCccEEEEEcCccccC
Q 002218 710 KESCATTLVDFGCGSGSLLDSLLDYPTALEKIVGVDISQKSLSRAAKIIHSKLSKKLDAAVPCTDVKSAVLFDGSITVFD 789 (952)
Q Consensus 710 ~~~k~krVLDIGCGeG~ll~~LAr~g~~~~qVVGVDISeemLe~ArkrLsa~la~~~~~l~Pr~~~~nVtf~qGDa~dLp 789 (952)
...++.+|||+|||+|.++..+++.. +..+|+|+|+|+.|++.|+++... ...++.++++|+.+++
T Consensus 415 d~~~g~rVLDIGCGTG~ls~~LA~~~-P~~kVtGIDIS~~MLe~Ararl~~-------------~g~~ie~I~gDa~dLp 480 (677)
T PRK06922 415 DYIKGDTIVDVGAGGGVMLDMIEEET-EDKRIYGIDISENVIDTLKKKKQN-------------EGRSWNVIKGDAINLS 480 (677)
T ss_pred hhcCCCEEEEeCCCCCHHHHHHHHhC-CCCEEEEEECCHHHHHHHHHHhhh-------------cCCCeEEEEcchHhCc
Confidence 33467899999999999998888765 458999999999999999876431 1236888999998877
Q ss_pred --CCCCCccEEEEccccccCC-----------hhHHHHHHHHHHHccCCC-EEEEEe
Q 002218 790 --SRLHGFDIGTCLEVIEHME-----------EDEASQFGNIVLSSFRPR-ILIVST 832 (952)
Q Consensus 790 --f~d~sFDVVVcieVIEHL~-----------dD~l~~L~eeI~RvLKPG-~LIIST 832 (952)
+++++||+|++..++||+. .+....+.+++.++|||| .+++..
T Consensus 481 ~~fedeSFDvVVsn~vLH~L~syIp~~g~~f~~edl~kiLreI~RVLKPGGrLII~D 537 (677)
T PRK06922 481 SSFEKESVDTIVYSSILHELFSYIEYEGKKFNHEVIKKGLQSAYEVLKPGGRIIIRD 537 (677)
T ss_pred cccCCCCEEEEEEchHHHhhhhhcccccccccHHHHHHHHHHHHHHcCCCcEEEEEe
Confidence 6778999999999998762 234456667899999999 666654
No 69
>PF05175 MTS: Methyltransferase small domain; InterPro: IPR007848 This domain is found in ribosomal RNA small subunit methyltransferase C and in other methyltransferases.; GO: 0008168 methyltransferase activity; PDB: 1WY7_A 1DUS_A 2OZV_A 2PJD_A 1VQ1_A 1NV9_A 1SG9_C 1NV8_A 3Q87_B 3DMF_A ....
Probab=99.09 E-value=2.2e-09 Score=107.77 Aligned_cols=138 Identities=20% Similarity=0.276 Sum_probs=97.2
Q ss_pred CCchhHHHHHHHHHHHhhcCCCCEEEEEcCccchHHHHHhcCCCCCceEEEEeCChHHHHHHHHHHhhhhhcccccCCCC
Q 002218 693 FSPPLSKQRVEYALQHIKESCATTLVDFGCGSGSLLDSLLDYPTALEKIVGVDISQKSLSRAAKIIHSKLSKKLDAAVPC 772 (952)
Q Consensus 693 F~PPL~~QR~efVldlL~~~k~krVLDIGCGeG~ll~~LAr~g~~~~qVVGVDISeemLe~ArkrLsa~la~~~~~l~Pr 772 (952)
|+++--..--..+.+.+...+..+|||+|||+|.++..+++.+ +..+|+++|+++.+++.+++++..
T Consensus 11 Fs~~~~d~~t~lL~~~l~~~~~~~vLDlG~G~G~i~~~la~~~-~~~~v~~vDi~~~a~~~a~~n~~~------------ 77 (170)
T PF05175_consen 11 FSPPRLDAGTRLLLDNLPKHKGGRVLDLGCGSGVISLALAKRG-PDAKVTAVDINPDALELAKRNAER------------ 77 (170)
T ss_dssp TTTTSHHHHHHHHHHHHHHHTTCEEEEETSTTSHHHHHHHHTS-TCEEEEEEESBHHHHHHHHHHHHH------------
T ss_pred eCCCCCCHHHHHHHHHHhhccCCeEEEecCChHHHHHHHHHhC-CCCEEEEEcCCHHHHHHHHHHHHh------------
Confidence 4444334444567777776688999999999999999999987 445799999999999999887753
Q ss_pred CCCccEEEEEcCccccCCCCCCccEEEEccccccCCh---hHHHHHHHHHHHccCCC-EE-EEEecCCchhHHHHhh
Q 002218 773 TDVKSAVLFDGSITVFDSRLHGFDIGTCLEVIEHMEE---DEASQFGNIVLSSFRPR-IL-IVSTPNYEYNAILQKS 844 (952)
Q Consensus 773 ~~~~nVtf~qGDa~dLpf~d~sFDVVVcieVIEHL~d---D~l~~L~eeI~RvLKPG-~L-IISTPN~efN~lf~~L 844 (952)
.+..+++++.+|+.+.. ....||+|+|.=-++.-.. +....|.+...++|||| .+ ++......+...+...
T Consensus 78 n~~~~v~~~~~d~~~~~-~~~~fD~Iv~NPP~~~~~~~~~~~~~~~i~~a~~~Lk~~G~l~lv~~~~~~~~~~l~~~ 153 (170)
T PF05175_consen 78 NGLENVEVVQSDLFEAL-PDGKFDLIVSNPPFHAGGDDGLDLLRDFIEQARRYLKPGGRLFLVINSHLGYERLLKEL 153 (170)
T ss_dssp TTCTTEEEEESSTTTTC-CTTCEEEEEE---SBTTSHCHHHHHHHHHHHHHHHEEEEEEEEEEEETTSCHHHHHHHH
T ss_pred cCccccccccccccccc-cccceeEEEEccchhcccccchhhHHHHHHHHHHhccCCCEEEEEeecCCChHHHHHHh
Confidence 23334999999986643 3689999999765444432 34567777899999998 44 3444344444444433
No 70
>TIGR00537 hemK_rel_arch HemK-related putative methylase. The gene hemK from E. coli was found to contribute to heme biosynthesis and originally suggested to be protoporphyrinogen oxidase (Medline 95189105). Functional analysis of the nearest homolog in Saccharomyces cerevisiae, YNL063w, finds it is not protoporphyrinogen oxidase and sequence analysis suggests that HemK homologs have S-adenosyl-methionine-dependent methyltransferase activity (Medline 99237242). Homologs are found, usually in a single copy, in nearly all completed genomes, but varying somewhat in apparent domain architecture. This model represents an archaeal and eukaryotic protein family that lacks an N-terminal domain found in HemK and its eubacterial homologs. It is found in a single copy in the first six completed archaeal and eukaryotic genomes.
Probab=99.07 E-value=2.3e-09 Score=107.67 Aligned_cols=113 Identities=12% Similarity=0.077 Sum_probs=86.7
Q ss_pred HHHHHhhcCCCCEEEEEcCccchHHHHHhcCCCCCceEEEEeCChHHHHHHHHHHhhhhhcccccCCCCCCCccEEEEEc
Q 002218 704 YALQHIKESCATTLVDFGCGSGSLLDSLLDYPTALEKIVGVDISQKSLSRAAKIIHSKLSKKLDAAVPCTDVKSAVLFDG 783 (952)
Q Consensus 704 fVldlL~~~k~krVLDIGCGeG~ll~~LAr~g~~~~qVVGVDISeemLe~ArkrLsa~la~~~~~l~Pr~~~~nVtf~qG 783 (952)
++.+.+...++.+|||+|||+|.++..+++.+ .+|+|+|+|+++++.+++++.. .+ .++++..+
T Consensus 10 ~l~~~l~~~~~~~vLdlG~G~G~~~~~l~~~~---~~v~~vD~s~~~~~~a~~~~~~------------~~-~~~~~~~~ 73 (179)
T TIGR00537 10 LLEANLRELKPDDVLEIGAGTGLVAIRLKGKG---KCILTTDINPFAVKELRENAKL------------NN-VGLDVVMT 73 (179)
T ss_pred HHHHHHHhcCCCeEEEeCCChhHHHHHHHhcC---CEEEEEECCHHHHHHHHHHHHH------------cC-CceEEEEc
Confidence 34444555667899999999999999999887 4899999999999999887642 12 26888999
Q ss_pred CccccCCCCCCccEEEEccccccCChh-------------------HHHHHHHHHHHccCCC-EEEEEecC
Q 002218 784 SITVFDSRLHGFDIGTCLEVIEHMEED-------------------EASQFGNIVLSSFRPR-ILIVSTPN 834 (952)
Q Consensus 784 Da~dLpf~d~sFDVVVcieVIEHL~dD-------------------~l~~L~eeI~RvLKPG-~LIISTPN 834 (952)
|+.+.. ..+||+|++.-.++|.+++ ....+.+++.++|+|| .+++.++.
T Consensus 74 d~~~~~--~~~fD~Vi~n~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~Lk~gG~~~~~~~~ 142 (179)
T TIGR00537 74 DLFKGV--RGKFDVILFNPPYLPLEDDLRRGDWLDVAIDGGKDGRKVIDRFLDELPEILKEGGRVQLIQSS 142 (179)
T ss_pred cccccc--CCcccEEEECCCCCCCcchhcccchhhhhhhcCCchHHHHHHHHHhHHHhhCCCCEEEEEEec
Confidence 987654 3589999999887766532 1345667899999998 66665554
No 71
>TIGR00091 tRNA (guanine-N(7)-)-methyltransferase. In E. coli, this protein flanks the DNA repair protein MutY, also called micA.
Probab=99.06 E-value=6e-10 Score=114.00 Aligned_cols=115 Identities=12% Similarity=0.086 Sum_probs=87.0
Q ss_pred CCCEEEEEcCccchHHHHHhcCCCCCceEEEEeCChHHHHHHHHHHhhhhhcccccCCCCCCCccEEEEEcCccccC---
Q 002218 713 CATTLVDFGCGSGSLLDSLLDYPTALEKIVGVDISQKSLSRAAKIIHSKLSKKLDAAVPCTDVKSAVLFDGSITVFD--- 789 (952)
Q Consensus 713 k~krVLDIGCGeG~ll~~LAr~g~~~~qVVGVDISeemLe~ArkrLsa~la~~~~~l~Pr~~~~nVtf~qGDa~dLp--- 789 (952)
...+|||||||+|.++..+++.. +..+|+|||+++.+++.|++++.. .+..+++++++|+.+++
T Consensus 16 ~~~~ilDiGcG~G~~~~~la~~~-p~~~v~gvD~~~~~l~~a~~~~~~------------~~l~ni~~i~~d~~~~~~~~ 82 (194)
T TIGR00091 16 KAPLHLEIGCGKGRFLIDMAKQN-PDKNFLGIEIHTPIVLAANNKANK------------LGLKNLHVLCGDANELLDKF 82 (194)
T ss_pred CCceEEEeCCCccHHHHHHHHhC-CCCCEEEEEeeHHHHHHHHHHHHH------------hCCCCEEEEccCHHHHHHhh
Confidence 45699999999999999999876 457999999999999999877642 23458999999998754
Q ss_pred CCCCCccEEEEccccccCChhH------HHHHHHHHHHccCCC-EEEEEecCCchhHH
Q 002218 790 SRLHGFDIGTCLEVIEHMEEDE------ASQFGNIVLSSFRPR-ILIVSTPNYEYNAI 840 (952)
Q Consensus 790 f~d~sFDVVVcieVIEHL~dD~------l~~L~eeI~RvLKPG-~LIISTPN~efN~l 840 (952)
+..+.+|.|++...-.|..... ...+.+++.++|||| .+++.|.+..+...
T Consensus 83 ~~~~~~d~v~~~~pdpw~k~~h~~~r~~~~~~l~~~~r~LkpgG~l~~~td~~~~~~~ 140 (194)
T TIGR00091 83 FPDGSLSKVFLNFPDPWPKKRHNKRRITQPHFLKEYANVLKKGGVIHFKTDNEPLFED 140 (194)
T ss_pred CCCCceeEEEEECCCcCCCCCccccccCCHHHHHHHHHHhCCCCEEEEEeCCHHHHHH
Confidence 3456899998865433322100 134667899999999 88888888765543
No 72
>PRK00312 pcm protein-L-isoaspartate O-methyltransferase; Reviewed
Probab=99.06 E-value=1.8e-09 Score=111.30 Aligned_cols=108 Identities=12% Similarity=0.110 Sum_probs=85.5
Q ss_pred HHHHHHhhcCCCCEEEEEcCccchHHHHHhcCCCCCceEEEEeCChHHHHHHHHHHhhhhhcccccCCCCCCCccEEEEE
Q 002218 703 EYALQHIKESCATTLVDFGCGSGSLLDSLLDYPTALEKIVGVDISQKSLSRAAKIIHSKLSKKLDAAVPCTDVKSAVLFD 782 (952)
Q Consensus 703 efVldlL~~~k~krVLDIGCGeG~ll~~LAr~g~~~~qVVGVDISeemLe~ArkrLsa~la~~~~~l~Pr~~~~nVtf~q 782 (952)
.++.+.+...++.+|||+|||+|.++..|++.. .+|+++|+++++++.|++++.. .+..++++.+
T Consensus 68 ~~l~~~l~~~~~~~VLeiG~GsG~~t~~la~~~---~~v~~vd~~~~~~~~a~~~~~~------------~~~~~v~~~~ 132 (212)
T PRK00312 68 ARMTELLELKPGDRVLEIGTGSGYQAAVLAHLV---RRVFSVERIKTLQWEAKRRLKQ------------LGLHNVSVRH 132 (212)
T ss_pred HHHHHhcCCCCCCEEEEECCCccHHHHHHHHHh---CEEEEEeCCHHHHHHHHHHHHH------------CCCCceEEEE
Confidence 455566666778999999999999999888876 5899999999999999987753 2344699999
Q ss_pred cCccccCCCCCCccEEEEccccccCChhHHHHHHHHHHHccCCC-EEEEEec
Q 002218 783 GSITVFDSRLHGFDIGTCLEVIEHMEEDEASQFGNIVLSSFRPR-ILIVSTP 833 (952)
Q Consensus 783 GDa~dLpf~d~sFDVVVcieVIEHL~dD~l~~L~eeI~RvLKPG-~LIISTP 833 (952)
+|..+.....+.||+|++...+++++ +.+.+.|+|| .+++...
T Consensus 133 ~d~~~~~~~~~~fD~I~~~~~~~~~~--------~~l~~~L~~gG~lv~~~~ 176 (212)
T PRK00312 133 GDGWKGWPAYAPFDRILVTAAAPEIP--------RALLEQLKEGGILVAPVG 176 (212)
T ss_pred CCcccCCCcCCCcCEEEEccCchhhh--------HHHHHhcCCCcEEEEEEc
Confidence 99866433457899999988877775 3467899998 7777665
No 73
>COG4106 Tam Trans-aconitate methyltransferase [General function prediction only]
Probab=99.05 E-value=3.4e-10 Score=118.71 Aligned_cols=109 Identities=21% Similarity=0.337 Sum_probs=92.4
Q ss_pred HHHhhcCCCCEEEEEcCccchHHHHHhcCCCCCceEEEEeCChHHHHHHHHHHhhhhhcccccCCCCCCCccEEEEEcCc
Q 002218 706 LQHIKESCATTLVDFGCGSGSLLDSLLDYPTALEKIVGVDISQKSLSRAAKIIHSKLSKKLDAAVPCTDVKSAVLFDGSI 785 (952)
Q Consensus 706 ldlL~~~k~krVLDIGCGeG~ll~~LAr~g~~~~qVVGVDISeemLe~ArkrLsa~la~~~~~l~Pr~~~~nVtf~qGDa 785 (952)
+..+......+|.|+|||.|..+..|+++. +...|+|||-|++||+.|++++ ++++|..+|+
T Consensus 23 la~Vp~~~~~~v~DLGCGpGnsTelL~~Rw-P~A~i~GiDsS~~Mla~Aa~rl-----------------p~~~f~~aDl 84 (257)
T COG4106 23 LARVPLERPRRVVDLGCGPGNSTELLARRW-PDAVITGIDSSPAMLAKAAQRL-----------------PDATFEEADL 84 (257)
T ss_pred HhhCCccccceeeecCCCCCHHHHHHHHhC-CCCeEeeccCCHHHHHHHHHhC-----------------CCCceecccH
Confidence 334455677899999999999999999987 6799999999999999997653 5899999999
Q ss_pred cccCCCCCCccEEEEccccccCChhHHHHHHHHHHHccCCC-EEEEEecCC
Q 002218 786 TVFDSRLHGFDIGTCLEVIEHMEEDEASQFGNIVLSSFRPR-ILIVSTPNY 835 (952)
Q Consensus 786 ~dLpf~d~sFDVVVcieVIEHL~dD~l~~L~eeI~RvLKPG-~LIISTPN~ 835 (952)
.++.. ...+|+++++-+++++++.. ..|. .+...|.|| .+.+-.|+.
T Consensus 85 ~~w~p-~~~~dllfaNAvlqWlpdH~-~ll~-rL~~~L~Pgg~LAVQmPdN 132 (257)
T COG4106 85 RTWKP-EQPTDLLFANAVLQWLPDHP-ELLP-RLVSQLAPGGVLAVQMPDN 132 (257)
T ss_pred hhcCC-CCccchhhhhhhhhhccccH-HHHH-HHHHhhCCCceEEEECCCc
Confidence 98863 56899999999999999444 5665 599999999 888888864
No 74
>PLN03075 nicotianamine synthase; Provisional
Probab=99.05 E-value=1.7e-09 Score=118.53 Aligned_cols=109 Identities=15% Similarity=0.184 Sum_probs=82.4
Q ss_pred CCCEEEEEcCccchHHH-HHh-cCCCCCceEEEEeCChHHHHHHHHHHhhhhhcccccCCCCCCCccEEEEEcCccccCC
Q 002218 713 CATTLVDFGCGSGSLLD-SLL-DYPTALEKIVGVDISQKSLSRAAKIIHSKLSKKLDAAVPCTDVKSAVLFDGSITVFDS 790 (952)
Q Consensus 713 k~krVLDIGCGeG~ll~-~LA-r~g~~~~qVVGVDISeemLe~ArkrLsa~la~~~~~l~Pr~~~~nVtf~qGDa~dLpf 790 (952)
++++|+|||||.|.++. .++ +.. +..+++|+|+++++++.|++.+... ..-..+++|.++|+.+...
T Consensus 123 ~p~~VldIGcGpgpltaiilaa~~~-p~~~~~giD~d~~ai~~Ar~~~~~~----------~gL~~rV~F~~~Da~~~~~ 191 (296)
T PLN03075 123 VPTKVAFVGSGPLPLTSIVLAKHHL-PTTSFHNFDIDPSANDVARRLVSSD----------PDLSKRMFFHTADVMDVTE 191 (296)
T ss_pred CCCEEEEECCCCcHHHHHHHHHhcC-CCCEEEEEeCCHHHHHHHHHHhhhc----------cCccCCcEEEECchhhccc
Confidence 78999999999885543 333 333 4578999999999999999876421 1123479999999988754
Q ss_pred CCCCccEEEEccccccCChhHHHHHHHHHHHccCCC-EEEEEec
Q 002218 791 RLHGFDIGTCLEVIEHMEEDEASQFGNIVLSSFRPR-ILIVSTP 833 (952)
Q Consensus 791 ~d~sFDVVVcieVIEHL~dD~l~~L~eeI~RvLKPG-~LIISTP 833 (952)
....||+|++. +++++..+....+.+.+.+.|+|| .+++-+.
T Consensus 192 ~l~~FDlVF~~-ALi~~dk~~k~~vL~~l~~~LkPGG~Lvlr~~ 234 (296)
T PLN03075 192 SLKEYDVVFLA-ALVGMDKEEKVKVIEHLGKHMAPGALLMLRSA 234 (296)
T ss_pred ccCCcCEEEEe-cccccccccHHHHHHHHHHhcCCCcEEEEecc
Confidence 56789999999 999986444455556899999999 6666553
No 75
>TIGR02716 C20_methyl_CrtF C-20 methyltransferase BchU. Members of this protein family are the S-adenosylmethionine-depenedent C-20 methyltransferase BchU, part of the pathway of bacteriochlorophyll c production in photosynthetic green sulfur bacteria. The position modified by this enzyme represents the difference between bacteriochlorophylls c and d; strains lacking this protein can only produced bacteriochlorophyll d.
Probab=99.03 E-value=2.9e-09 Score=115.80 Aligned_cols=114 Identities=11% Similarity=0.073 Sum_probs=89.2
Q ss_pred HHHHHhhcCCCCEEEEEcCccchHHHHHhcCCCCCceEEEEeCChHHHHHHHHHHhhhhhcccccCCCCCCCccEEEEEc
Q 002218 704 YALQHIKESCATTLVDFGCGSGSLLDSLLDYPTALEKIVGVDISQKSLSRAAKIIHSKLSKKLDAAVPCTDVKSAVLFDG 783 (952)
Q Consensus 704 fVldlL~~~k~krVLDIGCGeG~ll~~LAr~g~~~~qVVGVDISeemLe~ArkrLsa~la~~~~~l~Pr~~~~nVtf~qG 783 (952)
.+.+.+...+..+|||||||+|.++..+++.. +..+++++|. +.+++.+++++... +...+++++.+
T Consensus 140 ~l~~~~~~~~~~~vlDiG~G~G~~~~~~~~~~-p~~~~~~~D~-~~~~~~a~~~~~~~-----------gl~~rv~~~~~ 206 (306)
T TIGR02716 140 LLLEEAKLDGVKKMIDVGGGIGDISAAMLKHF-PELDSTILNL-PGAIDLVNENAAEK-----------GVADRMRGIAV 206 (306)
T ss_pred HHHHHcCCCCCCEEEEeCCchhHHHHHHHHHC-CCCEEEEEec-HHHHHHHHHHHHhC-----------CccceEEEEec
Confidence 44555555677899999999999999999886 4578999997 78999998776431 12347999999
Q ss_pred CccccCCCCCCccEEEEccccccCChhHHHHHHHHHHHccCCC-EEEEEe
Q 002218 784 SITVFDSRLHGFDIGTCLEVIEHMEEDEASQFGNIVLSSFRPR-ILIVST 832 (952)
Q Consensus 784 Da~dLpf~d~sFDVVVcieVIEHL~dD~l~~L~eeI~RvLKPG-~LIIST 832 (952)
|+.+.+++ .+|+|++..++|+..++....+.+++++.|+|| .++|..
T Consensus 207 d~~~~~~~--~~D~v~~~~~lh~~~~~~~~~il~~~~~~L~pgG~l~i~d 254 (306)
T TIGR02716 207 DIYKESYP--EADAVLFCRILYSANEQLSTIMCKKAFDAMRSGGRLLILD 254 (306)
T ss_pred CccCCCCC--CCCEEEeEhhhhcCChHHHHHHHHHHHHhcCCCCEEEEEE
Confidence 99765543 479999999999998766566677899999998 666653
No 76
>TIGR03438 probable methyltransferase. This model represents a distinct set of uncharacterized proteins found in the bacteria. Analysis by PSI-BLAST shows remote sequence homology to methyltransferases
Probab=99.02 E-value=2.6e-09 Score=116.69 Aligned_cols=109 Identities=19% Similarity=0.116 Sum_probs=81.1
Q ss_pred CCCEEEEEcCccchHHHHHhcCCCCCceEEEEeCChHHHHHHHHHHhhhhhcccccCCCCCCCccEEEEEcCcccc-CCC
Q 002218 713 CATTLVDFGCGSGSLLDSLLDYPTALEKIVGVDISQKSLSRAAKIIHSKLSKKLDAAVPCTDVKSAVLFDGSITVF-DSR 791 (952)
Q Consensus 713 k~krVLDIGCGeG~ll~~LAr~g~~~~qVVGVDISeemLe~ArkrLsa~la~~~~~l~Pr~~~~nVtf~qGDa~dL-pf~ 791 (952)
.+.+|||+|||+|..+..|++......+|+|||+|++||+.|++++.+.. ...++.++++|+.+. +..
T Consensus 63 ~~~~iLELGcGtG~~t~~Ll~~l~~~~~~~~iDiS~~mL~~a~~~l~~~~-----------p~~~v~~i~gD~~~~~~~~ 131 (301)
T TIGR03438 63 AGCELVELGSGSSRKTRLLLDALRQPARYVPIDISADALKESAAALAADY-----------PQLEVHGICADFTQPLALP 131 (301)
T ss_pred CCCeEEecCCCcchhHHHHHHhhccCCeEEEEECCHHHHHHHHHHHHhhC-----------CCceEEEEEEcccchhhhh
Confidence 45799999999999999998774213789999999999999988765311 113578899999763 322
Q ss_pred CC----CccEEEEccccccCChhHHHHHHHHHHHccCCC-EEEEEe
Q 002218 792 LH----GFDIGTCLEVIEHMEEDEASQFGNIVLSSFRPR-ILIVST 832 (952)
Q Consensus 792 d~----sFDVVVcieVIEHL~dD~l~~L~eeI~RvLKPG-~LIIST 832 (952)
.. ...++++...+.|+++++...+.+++.++|+|| .++|..
T Consensus 132 ~~~~~~~~~~~~~gs~~~~~~~~e~~~~L~~i~~~L~pgG~~lig~ 177 (301)
T TIGR03438 132 PEPAAGRRLGFFPGSTIGNFTPEEAVAFLRRIRQLLGPGGGLLIGV 177 (301)
T ss_pred cccccCCeEEEEecccccCCCHHHHHHHHHHHHHhcCCCCEEEEec
Confidence 21 233444456899999888888888999999999 666543
No 77
>PF13659 Methyltransf_26: Methyltransferase domain; PDB: 3GJY_A 3LPM_B 2NP6_D 1AQI_B 2ADM_B 2IH2_A 2JG3_A 2IBS_D 2NP7_A 2IBT_A ....
Probab=98.99 E-value=1.3e-09 Score=100.64 Aligned_cols=108 Identities=20% Similarity=0.264 Sum_probs=82.7
Q ss_pred CCEEEEEcCccchHHHHHhcCCCCCceEEEEeCChHHHHHHHHHHhhhhhcccccCCCCCCCccEEEEEcCccccC--CC
Q 002218 714 ATTLVDFGCGSGSLLDSLLDYPTALEKIVGVDISQKSLSRAAKIIHSKLSKKLDAAVPCTDVKSAVLFDGSITVFD--SR 791 (952)
Q Consensus 714 ~krVLDIGCGeG~ll~~LAr~g~~~~qVVGVDISeemLe~ArkrLsa~la~~~~~l~Pr~~~~nVtf~qGDa~dLp--f~ 791 (952)
+.+|||+|||+|.++..+++.+ ..+++|+|+++..++.|++++... ....+++++++|+.+.. ..
T Consensus 1 g~~vlD~~~G~G~~~~~~~~~~--~~~~~gvdi~~~~~~~a~~~~~~~-----------~~~~~~~~~~~D~~~~~~~~~ 67 (117)
T PF13659_consen 1 GDRVLDPGCGSGTFLLAALRRG--AARVTGVDIDPEAVELARRNLPRN-----------GLDDRVEVIVGDARDLPEPLP 67 (117)
T ss_dssp TEEEEEETSTTCHHHHHHHHHC--TCEEEEEESSHHHHHHHHHHCHHC-----------TTTTTEEEEESHHHHHHHTCT
T ss_pred CCEEEEcCcchHHHHHHHHHHC--CCeEEEEEECHHHHHHHHHHHHHc-----------cCCceEEEEECchhhchhhcc
Confidence 3589999999999999998877 379999999999999998876531 12347999999998876 56
Q ss_pred CCCccEEEEccccccCC------hhHHHHHHHHHHHccCCC-EEEEEecC
Q 002218 792 LHGFDIGTCLEVIEHME------EDEASQFGNIVLSSFRPR-ILIVSTPN 834 (952)
Q Consensus 792 d~sFDVVVcieVIEHL~------dD~l~~L~eeI~RvLKPG-~LIISTPN 834 (952)
..+||+|++.--..... .+....|.+.+.++|||| .+++.+||
T Consensus 68 ~~~~D~Iv~npP~~~~~~~~~~~~~~~~~~~~~~~~~L~~gG~~~~~~~~ 117 (117)
T PF13659_consen 68 DGKFDLIVTNPPYGPRSGDKAALRRLYSRFLEAAARLLKPGGVLVFITPA 117 (117)
T ss_dssp TT-EEEEEE--STTSBTT----GGCHHHHHHHHHHHHEEEEEEEEEEEEG
T ss_pred CceeEEEEECCCCccccccchhhHHHHHHHHHHHHHHcCCCeEEEEEeCC
Confidence 78999999965443221 123356777899999999 77777775
No 78
>PRK07402 precorrin-6B methylase; Provisional
Probab=98.97 E-value=8.1e-09 Score=105.34 Aligned_cols=122 Identities=11% Similarity=0.143 Sum_probs=86.1
Q ss_pred chhHHHHHHHHHHHhhcCCCCEEEEEcCccchHHHHHhcCCCCCceEEEEeCChHHHHHHHHHHhhhhhcccccCCCCCC
Q 002218 695 PPLSKQRVEYALQHIKESCATTLVDFGCGSGSLLDSLLDYPTALEKIVGVDISQKSLSRAAKIIHSKLSKKLDAAVPCTD 774 (952)
Q Consensus 695 PPL~~QR~efVldlL~~~k~krVLDIGCGeG~ll~~LAr~g~~~~qVVGVDISeemLe~ArkrLsa~la~~~~~l~Pr~~ 774 (952)
|+....-...+.+.+...++.+|||+|||+|.++..+++.. +..+|+|||+++++++.+++++.. .+
T Consensus 22 p~t~~~v~~~l~~~l~~~~~~~VLDiG~G~G~~~~~la~~~-~~~~V~~vD~s~~~~~~a~~n~~~------------~~ 88 (196)
T PRK07402 22 PLTKREVRLLLISQLRLEPDSVLWDIGAGTGTIPVEAGLLC-PKGRVIAIERDEEVVNLIRRNCDR------------FG 88 (196)
T ss_pred CCCHHHHHHHHHHhcCCCCCCEEEEeCCCCCHHHHHHHHHC-CCCEEEEEeCCHHHHHHHHHHHHH------------hC
Confidence 34444444456777776677899999999999999888654 237999999999999999987653 12
Q ss_pred CccEEEEEcCccc-cCCCCCCccEEEEccccccCChhHHHHHHHHHHHccCCC-EEEEEecCC
Q 002218 775 VKSAVLFDGSITV-FDSRLHGFDIGTCLEVIEHMEEDEASQFGNIVLSSFRPR-ILIVSTPNY 835 (952)
Q Consensus 775 ~~nVtf~qGDa~d-Lpf~d~sFDVVVcieVIEHL~dD~l~~L~eeI~RvLKPG-~LIISTPN~ 835 (952)
..+++++.+|+.+ ++.....+|.++... . .....+.+.+.++|+|| .+++.+++.
T Consensus 89 ~~~v~~~~~d~~~~~~~~~~~~d~v~~~~-----~-~~~~~~l~~~~~~LkpgG~li~~~~~~ 145 (196)
T PRK07402 89 VKNVEVIEGSAPECLAQLAPAPDRVCIEG-----G-RPIKEILQAVWQYLKPGGRLVATASSL 145 (196)
T ss_pred CCCeEEEECchHHHHhhCCCCCCEEEEEC-----C-cCHHHHHHHHHHhcCCCeEEEEEeecH
Confidence 3478999999865 222223467764421 1 22344556799999999 788887764
No 79
>TIGR03534 RF_mod_PrmC protein-(glutamine-N5) methyltransferase, release factor-specific. Members of this protein family are HemK (PrmC), a protein once thought to be involved in heme biosynthesis but now recognized to be a protein-glutamine methyltransferase that modifies the peptide chain release factors. All members of the seed alignment are encoded next to the release factor 1 gene (prfA) and confirmed by phylogenetic analysis. SIMBAL analysis (manuscript in prep.) shows the motif [LIV]PRx[DE]TE (in Escherichia coli, IPRPDTE) confers specificity for the release factors rather than for ribosomal protein L3.
Probab=98.96 E-value=1e-08 Score=106.69 Aligned_cols=120 Identities=19% Similarity=0.222 Sum_probs=84.8
Q ss_pred HHHHHHHHHHhhcCCCCEEEEEcCccchHHHHHhcCCCCCceEEEEeCChHHHHHHHHHHhhhhhcccccCCCCCCCccE
Q 002218 699 KQRVEYALQHIKESCATTLVDFGCGSGSLLDSLLDYPTALEKIVGVDISQKSLSRAAKIIHSKLSKKLDAAVPCTDVKSA 778 (952)
Q Consensus 699 ~QR~efVldlL~~~k~krVLDIGCGeG~ll~~LAr~g~~~~qVVGVDISeemLe~ArkrLsa~la~~~~~l~Pr~~~~nV 778 (952)
....+.+.+.+. ..+.+|||+|||+|.++..+++.. +..+++|+|+++.+++.|++++.. .+..++
T Consensus 74 ~~l~~~~l~~~~-~~~~~ilDig~G~G~~~~~l~~~~-~~~~v~~iD~~~~~~~~a~~~~~~------------~~~~~~ 139 (251)
T TIGR03534 74 EELVEAALERLK-KGPLRVLDLGTGSGAIALALAKER-PDARVTAVDISPEALAVARKNAAR------------LGLDNV 139 (251)
T ss_pred HHHHHHHHHhcc-cCCCeEEEEeCcHhHHHHHHHHHC-CCCEEEEEECCHHHHHHHHHHHHH------------cCCCeE
Confidence 334444555443 245699999999999999999864 346999999999999999887642 233479
Q ss_pred EEEEcCccccCCCCCCccEEEEcc------ccccCChhH------------------HHHHHHHHHHccCCC-EEEEEec
Q 002218 779 VLFDGSITVFDSRLHGFDIGTCLE------VIEHMEEDE------------------ASQFGNIVLSSFRPR-ILIVSTP 833 (952)
Q Consensus 779 tf~qGDa~dLpf~d~sFDVVVcie------VIEHL~dD~------------------l~~L~eeI~RvLKPG-~LIISTP 833 (952)
+++++|+.+ ++..+.||+|++.- .++++..+. ...+.+.+.++|+|| .+++...
T Consensus 140 ~~~~~d~~~-~~~~~~fD~Vi~npPy~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~i~~~~~~L~~gG~~~~~~~ 218 (251)
T TIGR03534 140 TFLQSDWFE-PLPGGKFDLIVSNPPYIPEADIHLLDPEVRFHEPRLALFGGEDGLDFYRRIIAQAPRLLKPGGWLLLEIG 218 (251)
T ss_pred EEEECchhc-cCcCCceeEEEECCCCCchhhhhhcChhhhhcCCHHHHcCCCcHHHHHHHHHHHHHHhcccCCEEEEEEC
Confidence 999999976 34567899999842 223332221 135667899999998 6666543
No 80
>TIGR01177 conserved hypothetical protein TIGR01177. This family is found exclusively in the Archaea.
Probab=98.94 E-value=6.2e-09 Score=114.87 Aligned_cols=118 Identities=14% Similarity=0.105 Sum_probs=88.6
Q ss_pred HHHHHHhhcCCCCEEEEEcCccchHHHHHhcCCCCCceEEEEeCChHHHHHHHHHHhhhhhcccccCCCCCCCccEEEEE
Q 002218 703 EYALQHIKESCATTLVDFGCGSGSLLDSLLDYPTALEKIVGVDISQKSLSRAAKIIHSKLSKKLDAAVPCTDVKSAVLFD 782 (952)
Q Consensus 703 efVldlL~~~k~krVLDIGCGeG~ll~~LAr~g~~~~qVVGVDISeemLe~ArkrLsa~la~~~~~l~Pr~~~~nVtf~q 782 (952)
..++++....++.+|||+|||+|.++..++..+ .+++|+|+++.|++.|++++.. .+..++.+.+
T Consensus 172 ~~~~~l~~~~~g~~vLDp~cGtG~~lieaa~~~---~~v~g~Di~~~~~~~a~~nl~~------------~g~~~i~~~~ 236 (329)
T TIGR01177 172 RAMVNLARVTEGDRVLDPFCGTGGFLIEAGLMG---AKVIGCDIDWKMVAGARINLEH------------YGIEDFFVKR 236 (329)
T ss_pred HHHHHHhCCCCcCEEEECCCCCCHHHHHHHHhC---CeEEEEcCCHHHHHHHHHHHHH------------hCCCCCeEEe
Confidence 345555555677899999999999998887776 7999999999999999887653 1333588999
Q ss_pred cCccccCCCCCCccEEEEcc------cc-ccCChhHHHHHHHHHHHccCCC-EEEEEecCC
Q 002218 783 GSITVFDSRLHGFDIGTCLE------VI-EHMEEDEASQFGNIVLSSFRPR-ILIVSTPNY 835 (952)
Q Consensus 783 GDa~dLpf~d~sFDVVVcie------VI-EHL~dD~l~~L~eeI~RvLKPG-~LIISTPN~ 835 (952)
+|+.+++..++.||+|++.- .. .+...+....+.+++.++|+|| .+++.+|+.
T Consensus 237 ~D~~~l~~~~~~~D~Iv~dPPyg~~~~~~~~~~~~l~~~~l~~~~r~Lk~gG~lv~~~~~~ 297 (329)
T TIGR01177 237 GDATKLPLSSESVDAIATDPPYGRSTTAAGDGLESLYERSLEEFHEVLKSEGWIVYAVPTR 297 (329)
T ss_pred cchhcCCcccCCCCEEEECCCCcCcccccCCchHHHHHHHHHHHHHHccCCcEEEEEEcCC
Confidence 99999988788999999941 11 1111132356667899999998 666666654
No 81
>PRK15001 SAM-dependent 23S ribosomal RNA mG1835 methyltransferase; Provisional
Probab=98.93 E-value=1.5e-08 Score=114.69 Aligned_cols=118 Identities=18% Similarity=0.253 Sum_probs=85.8
Q ss_pred HHHHHHhhcCCCCEEEEEcCccchHHHHHhcCCCCCceEEEEeCChHHHHHHHHHHhhhhhcccccCCCCCCCccEEEEE
Q 002218 703 EYALQHIKESCATTLVDFGCGSGSLLDSLLDYPTALEKIVGVDISQKSLSRAAKIIHSKLSKKLDAAVPCTDVKSAVLFD 782 (952)
Q Consensus 703 efVldlL~~~k~krVLDIGCGeG~ll~~LAr~g~~~~qVVGVDISeemLe~ArkrLsa~la~~~~~l~Pr~~~~nVtf~q 782 (952)
+++++.+......+|||+|||+|.++..+++.+ +..+|+++|+|+.+++.|++++.... .....+++++.
T Consensus 218 rllL~~lp~~~~~~VLDLGCGtGvi~i~la~~~-P~~~V~~vD~S~~Av~~A~~N~~~n~---------~~~~~~v~~~~ 287 (378)
T PRK15001 218 RFFMQHLPENLEGEIVDLGCGNGVIGLTLLDKN-PQAKVVFVDESPMAVASSRLNVETNM---------PEALDRCEFMI 287 (378)
T ss_pred HHHHHhCCcccCCeEEEEeccccHHHHHHHHhC-CCCEEEEEECCHHHHHHHHHHHHHcC---------cccCceEEEEE
Confidence 456677765555799999999999999999876 45799999999999999998765321 01123789998
Q ss_pred cCccccCCCCCCccEEEEcccccc---CChhHHHHHHHHHHHccCCC-EEEEE
Q 002218 783 GSITVFDSRLHGFDIGTCLEVIEH---MEEDEASQFGNIVLSSFRPR-ILIVS 831 (952)
Q Consensus 783 GDa~dLpf~d~sFDVVVcieVIEH---L~dD~l~~L~eeI~RvLKPG-~LIIS 831 (952)
+|+... ....+||+|+|.--++. +.++....+.+.+.++|+|| .+++.
T Consensus 288 ~D~l~~-~~~~~fDlIlsNPPfh~~~~~~~~ia~~l~~~a~~~LkpGG~L~iV 339 (378)
T PRK15001 288 NNALSG-VEPFRFNAVLCNPPFHQQHALTDNVAWEMFHHARRCLKINGELYIV 339 (378)
T ss_pred cccccc-CCCCCEEEEEECcCcccCccCCHHHHHHHHHHHHHhcccCCEEEEE
Confidence 887543 23458999999754433 34344456667799999998 44443
No 82
>PRK14121 tRNA (guanine-N(7)-)-methyltransferase; Provisional
Probab=98.91 E-value=8.5e-09 Score=116.84 Aligned_cols=123 Identities=17% Similarity=0.189 Sum_probs=93.1
Q ss_pred HHHHhhcCCCCEEEEEcCccchHHHHHhcCCCCCceEEEEeCChHHHHHHHHHHhhhhhcccccCCCCCCCccEEEEEcC
Q 002218 705 ALQHIKESCATTLVDFGCGSGSLLDSLLDYPTALEKIVGVDISQKSLSRAAKIIHSKLSKKLDAAVPCTDVKSAVLFDGS 784 (952)
Q Consensus 705 VldlL~~~k~krVLDIGCGeG~ll~~LAr~g~~~~qVVGVDISeemLe~ArkrLsa~la~~~~~l~Pr~~~~nVtf~qGD 784 (952)
+.+.+....+..+||||||+|.++..+|+.. +...++|||+++.+++.|.+++.. .+..++.++++|
T Consensus 114 ~~~~~~~~~~p~vLEIGcGsG~~ll~lA~~~-P~~~~iGIEI~~~~i~~a~~ka~~------------~gL~NV~~i~~D 180 (390)
T PRK14121 114 FLDFISKNQEKILIEIGFGSGRHLLYQAKNN-PNKLFIGIEIHTPSIEQVLKQIEL------------LNLKNLLIINYD 180 (390)
T ss_pred HHHHhcCCCCCeEEEEcCcccHHHHHHHHhC-CCCCEEEEECCHHHHHHHHHHHHH------------cCCCcEEEEECC
Confidence 3344444556799999999999999999886 568999999999999999887642 345689999999
Q ss_pred cccc--CCCCCCccEEEEccccccCChh----HHHHHHHHHHHccCCC-EEEEEecCCchhHH
Q 002218 785 ITVF--DSRLHGFDIGTCLEVIEHMEED----EASQFGNIVLSSFRPR-ILIVSTPNYEYNAI 840 (952)
Q Consensus 785 a~dL--pf~d~sFDVVVcieVIEHL~dD----~l~~L~eeI~RvLKPG-~LIISTPN~efN~l 840 (952)
+..+ .++++++|.|++.....|.... ....+.+++.|+|+|| .+.+.|-+.+|-..
T Consensus 181 A~~ll~~~~~~s~D~I~lnFPdPW~KkrHRRlv~~~fL~e~~RvLkpGG~l~l~TD~~~y~~~ 243 (390)
T PRK14121 181 ARLLLELLPSNSVEKIFVHFPVPWDKKPHRRVISEDFLNEALRVLKPGGTLELRTDSELYFEF 243 (390)
T ss_pred HHHhhhhCCCCceeEEEEeCCCCccccchhhccHHHHHHHHHHHcCCCcEEEEEEECHHHHHH
Confidence 9764 3567899999886543332211 1146677899999999 88888887766543
No 83
>PRK00377 cbiT cobalt-precorrin-6Y C(15)-methyltransferase; Provisional
Probab=98.91 E-value=1.7e-08 Score=103.40 Aligned_cols=114 Identities=15% Similarity=0.139 Sum_probs=82.3
Q ss_pred HHHHhhcCCCCEEEEEcCccchHHHHHhcCCCCCceEEEEeCChHHHHHHHHHHhhhhhcccccCCCCCCCccEEEEEcC
Q 002218 705 ALQHIKESCATTLVDFGCGSGSLLDSLLDYPTALEKIVGVDISQKSLSRAAKIIHSKLSKKLDAAVPCTDVKSAVLFDGS 784 (952)
Q Consensus 705 VldlL~~~k~krVLDIGCGeG~ll~~LAr~g~~~~qVVGVDISeemLe~ArkrLsa~la~~~~~l~Pr~~~~nVtf~qGD 784 (952)
++..+...++.+|||+|||+|.++..+++..++..+|+++|+++.+++.|++++... ....++.++.+|
T Consensus 32 ~l~~l~~~~~~~vlDlG~GtG~~s~~~a~~~~~~~~v~avD~~~~~~~~a~~n~~~~-----------g~~~~v~~~~~d 100 (198)
T PRK00377 32 ALSKLRLRKGDMILDIGCGTGSVTVEASLLVGETGKVYAVDKDEKAINLTRRNAEKF-----------GVLNNIVLIKGE 100 (198)
T ss_pred HHHHcCCCCcCEEEEeCCcCCHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHh-----------CCCCCeEEEEec
Confidence 345666678889999999999999888764223368999999999999998876531 113478999999
Q ss_pred ccccCC-CCCCccEEEEccccccCChhHHHHHHHHHHHccCCC-EEEEEecC
Q 002218 785 ITVFDS-RLHGFDIGTCLEVIEHMEEDEASQFGNIVLSSFRPR-ILIVSTPN 834 (952)
Q Consensus 785 a~dLpf-~d~sFDVVVcieVIEHL~dD~l~~L~eeI~RvLKPG-~LIISTPN 834 (952)
+.+... ....||+|++.... .....+.+.+.++|||| .+++.++.
T Consensus 101 ~~~~l~~~~~~~D~V~~~~~~-----~~~~~~l~~~~~~LkpgG~lv~~~~~ 147 (198)
T PRK00377 101 APEILFTINEKFDRIFIGGGS-----EKLKEIISASWEIIKKGGRIVIDAIL 147 (198)
T ss_pred hhhhHhhcCCCCCEEEECCCc-----ccHHHHHHHHHHHcCCCcEEEEEeec
Confidence 876432 23689999985421 22234556799999998 66665553
No 84
>PRK13256 thiopurine S-methyltransferase; Reviewed
Probab=98.91 E-value=1.2e-08 Score=108.23 Aligned_cols=118 Identities=12% Similarity=0.091 Sum_probs=89.4
Q ss_pred CCCCEEEEEcCccchHHHHHhcCCCCCceEEEEeCChHHHHHHHHHHhhhhhcccccCCCCCCCccEEEEEcCccccCCC
Q 002218 712 SCATTLVDFGCGSGSLLDSLLDYPTALEKIVGVDISQKSLSRAAKIIHSKLSKKLDAAVPCTDVKSAVLFDGSITVFDSR 791 (952)
Q Consensus 712 ~k~krVLDIGCGeG~ll~~LAr~g~~~~qVVGVDISeemLe~ArkrLsa~la~~~~~l~Pr~~~~nVtf~qGDa~dLpf~ 791 (952)
.++.+||+.|||.|..+.+|+++| .+|+|||+|+.+++.+.+...-...-.......+....+|++++||+.+++..
T Consensus 42 ~~~~rvLvPgCGkg~D~~~LA~~G---~~V~GvDlS~~Ai~~~~~e~~~~~~~~~~~~~~~~~~~~i~~~~gD~f~l~~~ 118 (226)
T PRK13256 42 NDSSVCLIPMCGCSIDMLFFLSKG---VKVIGIELSEKAVLSFFSQNTINYEVIHGNDYKLYKGDDIEIYVADIFNLPKI 118 (226)
T ss_pred CCCCeEEEeCCCChHHHHHHHhCC---CcEEEEecCHHHHHHHHHHcCCCcceecccccceeccCceEEEEccCcCCCcc
Confidence 356899999999999999999999 89999999999999986632100000000000011234799999999998642
Q ss_pred ---CCCccEEEEccccccCChhHHHHHHHHHHHccCCC-EEEEEe
Q 002218 792 ---LHGFDIGTCLEVIEHMEEDEASQFGNIVLSSFRPR-ILIVST 832 (952)
Q Consensus 792 ---d~sFDVVVcieVIEHL~dD~l~~L~eeI~RvLKPG-~LIIST 832 (952)
.+.||+|+-...+.+|+++.+..+.+.+.++|+|| .+++-+
T Consensus 119 ~~~~~~fD~VyDra~~~Alpp~~R~~Y~~~l~~lL~pgg~llll~ 163 (226)
T PRK13256 119 ANNLPVFDIWYDRGAYIALPNDLRTNYAKMMLEVCSNNTQILLLV 163 (226)
T ss_pred ccccCCcCeeeeehhHhcCCHHHHHHHHHHHHHHhCCCcEEEEEE
Confidence 36899999999999999999999999999999998 444443
No 85
>cd02440 AdoMet_MTases S-adenosylmethionine-dependent methyltransferases (SAM or AdoMet-MTase), class I; AdoMet-MTases are enzymes that use S-adenosyl-L-methionine (SAM or AdoMet) as a substrate for methyltransfer, creating the product S-adenosyl-L-homocysteine (AdoHcy). There are at least five structurally distinct families of AdoMet-MTases, class I being the largest and most diverse. Within this class enzymes can be classified by different substrate specificities (small molecules, lipids, nucleic acids, etc.) and different target atoms for methylation (nitrogen, oxygen, carbon, sulfur, etc.).
Probab=98.90 E-value=1.9e-08 Score=86.42 Aligned_cols=101 Identities=23% Similarity=0.397 Sum_probs=78.7
Q ss_pred EEEEEcCccchHHHHHhcCCCCCceEEEEeCChHHHHHHHHHHhhhhhcccccCCCCCCCccEEEEEcCccccCC-CCCC
Q 002218 716 TLVDFGCGSGSLLDSLLDYPTALEKIVGVDISQKSLSRAAKIIHSKLSKKLDAAVPCTDVKSAVLFDGSITVFDS-RLHG 794 (952)
Q Consensus 716 rVLDIGCGeG~ll~~LAr~g~~~~qVVGVDISeemLe~ArkrLsa~la~~~~~l~Pr~~~~nVtf~qGDa~dLpf-~d~s 794 (952)
+|+|+|||.|.++..+++.. ..+++++|+++.+++.+++... .....+++++.+|+.+... ...+
T Consensus 1 ~ildig~G~G~~~~~~~~~~--~~~~~~~d~~~~~~~~~~~~~~------------~~~~~~~~~~~~~~~~~~~~~~~~ 66 (107)
T cd02440 1 RVLDLGCGTGALALALASGP--GARVTGVDISPVALELARKAAA------------ALLADNVEVLKGDAEELPPEADES 66 (107)
T ss_pred CeEEEcCCccHHHHHHhcCC--CCEEEEEeCCHHHHHHHHHHHh------------cccccceEEEEcChhhhccccCCc
Confidence 58999999999999998732 3799999999999999874321 1233578999999988764 5678
Q ss_pred ccEEEEccccccCChhHHHHHHHHHHHccCCC-EEEEE
Q 002218 795 FDIGTCLEVIEHMEEDEASQFGNIVLSSFRPR-ILIVS 831 (952)
Q Consensus 795 FDVVVcieVIEHL~dD~l~~L~eeI~RvLKPG-~LIIS 831 (952)
||+|++..+++++. +....+.+.+.+.++|| .++++
T Consensus 67 ~d~i~~~~~~~~~~-~~~~~~l~~~~~~l~~~g~~~~~ 103 (107)
T cd02440 67 FDVIISDPPLHHLV-EDLARFLEEARRLLKPGGVLVLT 103 (107)
T ss_pred eEEEEEccceeehh-hHHHHHHHHHHHHcCCCCEEEEE
Confidence 99999999999863 44455556799999998 55543
No 86
>KOG4300 consensus Predicted methyltransferase [General function prediction only]
Probab=98.90 E-value=1.2e-08 Score=106.64 Aligned_cols=109 Identities=17% Similarity=0.200 Sum_probs=86.3
Q ss_pred HhhcCCCCEEEEEcCccchHHHHHhcCCCCCceEEEEeCChHHHHHHHHHHhhhhhcccccCCCCCCCccEE-EEEcCcc
Q 002218 708 HIKESCATTLVDFGCGSGSLLDSLLDYPTALEKIVGVDISQKSLSRAAKIIHSKLSKKLDAAVPCTDVKSAV-LFDGSIT 786 (952)
Q Consensus 708 lL~~~k~krVLDIGCGeG~ll~~LAr~g~~~~qVVGVDISeemLe~ArkrLsa~la~~~~~l~Pr~~~~nVt-f~qGDa~ 786 (952)
.+.+.....||+||||+|....+.-.. +..+|+++|.++.|-+.|.+++.+ ..++++. |++++.+
T Consensus 71 ~~gk~~K~~vLEvgcGtG~Nfkfy~~~--p~~svt~lDpn~~mee~~~ks~~E------------~k~~~~~~fvva~ge 136 (252)
T KOG4300|consen 71 FLGKSGKGDVLEVGCGTGANFKFYPWK--PINSVTCLDPNEKMEEIADKSAAE------------KKPLQVERFVVADGE 136 (252)
T ss_pred HhcccCccceEEecccCCCCcccccCC--CCceEEEeCCcHHHHHHHHHHHhh------------ccCcceEEEEeechh
Confidence 344445567899999999998765432 348999999999999999887653 2456777 9999999
Q ss_pred ccC-CCCCCccEEEEccccccCChhHHHHHHHHHHHccCCC-EEEEEe
Q 002218 787 VFD-SRLHGFDIGTCLEVIEHMEEDEASQFGNIVLSSFRPR-ILIVST 832 (952)
Q Consensus 787 dLp-f~d~sFDVVVcieVIEHL~dD~l~~L~eeI~RvLKPG-~LIIST 832 (952)
+++ ..++++|+|||..+|--.. ++.+.+. ++.|+|+|| .+++-.
T Consensus 137 ~l~~l~d~s~DtVV~TlvLCSve-~~~k~L~-e~~rlLRpgG~iifiE 182 (252)
T KOG4300|consen 137 NLPQLADGSYDTVVCTLVLCSVE-DPVKQLN-EVRRLLRPGGRIIFIE 182 (252)
T ss_pred cCcccccCCeeeEEEEEEEeccC-CHHHHHH-HHHHhcCCCcEEEEEe
Confidence 998 5789999999999999998 5556654 799999999 555543
No 87
>PRK14968 putative methyltransferase; Provisional
Probab=98.89 E-value=3.2e-08 Score=98.35 Aligned_cols=116 Identities=16% Similarity=0.129 Sum_probs=82.1
Q ss_pred HHHHhhcCCCCEEEEEcCccchHHHHHhcCCCCCceEEEEeCChHHHHHHHHHHhhhhhcccccCCCCCCCccEEEEEcC
Q 002218 705 ALQHIKESCATTLVDFGCGSGSLLDSLLDYPTALEKIVGVDISQKSLSRAAKIIHSKLSKKLDAAVPCTDVKSAVLFDGS 784 (952)
Q Consensus 705 VldlL~~~k~krVLDIGCGeG~ll~~LAr~g~~~~qVVGVDISeemLe~ArkrLsa~la~~~~~l~Pr~~~~nVtf~qGD 784 (952)
+.+.+...++++|||+|||+|.++..+++.+ .+++|+|+|+++++.+++++.... .....+.+.++|
T Consensus 15 l~~~~~~~~~~~vLd~G~G~G~~~~~l~~~~---~~v~~~D~s~~~~~~a~~~~~~~~----------~~~~~~~~~~~d 81 (188)
T PRK14968 15 LAENAVDKKGDRVLEVGTGSGIVAIVAAKNG---KKVVGVDINPYAVECAKCNAKLNN----------IRNNGVEVIRSD 81 (188)
T ss_pred HHHhhhccCCCEEEEEccccCHHHHHHHhhc---ceEEEEECCHHHHHHHHHHHHHcC----------CCCcceEEEecc
Confidence 4444444677899999999999999999885 799999999999999988764210 011128888998
Q ss_pred ccccCCCCCCccEEEEccccccCC-------------------hhHHHHHHHHHHHccCCC-EEEEEecC
Q 002218 785 ITVFDSRLHGFDIGTCLEVIEHME-------------------EDEASQFGNIVLSSFRPR-ILIVSTPN 834 (952)
Q Consensus 785 a~dLpf~d~sFDVVVcieVIEHL~-------------------dD~l~~L~eeI~RvLKPG-~LIISTPN 834 (952)
+.+.. ....||+|++.....+-. .+....+.+++.++|||| .+++..+.
T Consensus 82 ~~~~~-~~~~~d~vi~n~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~Lk~gG~~~~~~~~ 150 (188)
T PRK14968 82 LFEPF-RGDKFDVILFNPPYLPTEEEEEWDDWLNYALSGGKDGREVIDRFLDEVGRYLKPGGRILLLQSS 150 (188)
T ss_pred ccccc-cccCceEEEECCCcCCCCchhhhhhhhhhhhccCcChHHHHHHHHHHHHHhcCCCeEEEEEEcc
Confidence 86633 344899999865432211 122345677899999998 66665543
No 88
>PRK09489 rsmC 16S ribosomal RNA m2G1207 methyltransferase; Provisional
Probab=98.89 E-value=2.3e-08 Score=111.69 Aligned_cols=115 Identities=15% Similarity=0.163 Sum_probs=84.6
Q ss_pred HHHHHHhhcCCCCEEEEEcCccchHHHHHhcCCCCCceEEEEeCChHHHHHHHHHHhhhhhcccccCCCCCCCccEEEEE
Q 002218 703 EYALQHIKESCATTLVDFGCGSGSLLDSLLDYPTALEKIVGVDISQKSLSRAAKIIHSKLSKKLDAAVPCTDVKSAVLFD 782 (952)
Q Consensus 703 efVldlL~~~k~krVLDIGCGeG~ll~~LAr~g~~~~qVVGVDISeemLe~ArkrLsa~la~~~~~l~Pr~~~~nVtf~q 782 (952)
+.+++.+......+|||+|||+|.++..+++.. +..+|+++|+|+.|++.|++++... + ...++..
T Consensus 186 ~lLl~~l~~~~~g~VLDlGCG~G~ls~~la~~~-p~~~v~~vDis~~Al~~A~~nl~~n------------~-l~~~~~~ 251 (342)
T PRK09489 186 QLLLSTLTPHTKGKVLDVGCGAGVLSAVLARHS-PKIRLTLSDVSAAALESSRATLAAN------------G-LEGEVFA 251 (342)
T ss_pred HHHHHhccccCCCeEEEeccCcCHHHHHHHHhC-CCCEEEEEECCHHHHHHHHHHHHHc------------C-CCCEEEE
Confidence 345555555455689999999999999999875 3468999999999999998876531 1 2356777
Q ss_pred cCccccCCCCCCccEEEEccccccCC---hhHHHHHHHHHHHccCCC-EEEEEec
Q 002218 783 GSITVFDSRLHGFDIGTCLEVIEHME---EDEASQFGNIVLSSFRPR-ILIVSTP 833 (952)
Q Consensus 783 GDa~dLpf~d~sFDVVVcieVIEHL~---dD~l~~L~eeI~RvLKPG-~LIISTP 833 (952)
+|+... ..+.||+|+|.-.+|+.. .+....|.+.+.++|||| .++|...
T Consensus 252 ~D~~~~--~~~~fDlIvsNPPFH~g~~~~~~~~~~~i~~a~~~LkpgG~L~iVan 304 (342)
T PRK09489 252 SNVFSD--IKGRFDMIISNPPFHDGIQTSLDAAQTLIRGAVRHLNSGGELRIVAN 304 (342)
T ss_pred cccccc--cCCCccEEEECCCccCCccccHHHHHHHHHHHHHhcCcCCEEEEEEe
Confidence 777542 356899999988877632 234456677899999998 5555443
No 89
>PRK14967 putative methyltransferase; Provisional
Probab=98.88 E-value=3.3e-08 Score=103.07 Aligned_cols=117 Identities=14% Similarity=0.131 Sum_probs=81.3
Q ss_pred cCCCCEEEEEcCccchHHHHHhcCCCCCceEEEEeCChHHHHHHHHHHhhhhhcccccCCCCCCCccEEEEEcCccccCC
Q 002218 711 ESCATTLVDFGCGSGSLLDSLLDYPTALEKIVGVDISQKSLSRAAKIIHSKLSKKLDAAVPCTDVKSAVLFDGSITVFDS 790 (952)
Q Consensus 711 ~~k~krVLDIGCGeG~ll~~LAr~g~~~~qVVGVDISeemLe~ArkrLsa~la~~~~~l~Pr~~~~nVtf~qGDa~dLpf 790 (952)
..++.+|||+|||+|.++..+++.+. .+|+|+|+++.+++.+++++.. .+ .++++.++|+.+. .
T Consensus 34 ~~~~~~vLDlGcG~G~~~~~la~~~~--~~v~~vD~s~~~l~~a~~n~~~------------~~-~~~~~~~~d~~~~-~ 97 (223)
T PRK14967 34 LGPGRRVLDLCTGSGALAVAAAAAGA--GSVTAVDISRRAVRSARLNALL------------AG-VDVDVRRGDWARA-V 97 (223)
T ss_pred cCCCCeEEEecCCHHHHHHHHHHcCC--CeEEEEECCHHHHHHHHHHHHH------------hC-CeeEEEECchhhh-c
Confidence 34568999999999999999988752 5999999999999999877642 12 2588889998764 3
Q ss_pred CCCCccEEEEccccccCC-------------------hhHHHHHHHHHHHccCCC-EEEEEecCC-chhHHHHh
Q 002218 791 RLHGFDIGTCLEVIEHME-------------------EDEASQFGNIVLSSFRPR-ILIVSTPNY-EYNAILQK 843 (952)
Q Consensus 791 ~d~sFDVVVcieVIEHL~-------------------dD~l~~L~eeI~RvLKPG-~LIISTPN~-efN~lf~~ 843 (952)
...+||+|++.--..+-. ......+.+++.++|||| .+++..+.. .....+..
T Consensus 98 ~~~~fD~Vi~npPy~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~a~~~Lk~gG~l~~~~~~~~~~~~~~~~ 171 (223)
T PRK14967 98 EFRPFDVVVSNPPYVPAPPDAPPSRGPARAWDAGPDGRAVLDRLCDAAPALLAPGGSLLLVQSELSGVERTLTR 171 (223)
T ss_pred cCCCeeEEEECCCCCCCCcccccccChhHhhhCCCcHHHHHHHHHHHHHHhcCCCcEEEEEEecccCHHHHHHH
Confidence 457899999963211110 011345566789999998 666544443 44444443
No 90
>PRK13943 protein-L-isoaspartate O-methyltransferase; Provisional
Probab=98.88 E-value=1.6e-08 Score=112.32 Aligned_cols=110 Identities=11% Similarity=0.135 Sum_probs=83.9
Q ss_pred HHHHHHhhcCCCCEEEEEcCccchHHHHHhcCCCCCceEEEEeCChHHHHHHHHHHhhhhhcccccCCCCCCCccEEEEE
Q 002218 703 EYALQHIKESCATTLVDFGCGSGSLLDSLLDYPTALEKIVGVDISQKSLSRAAKIIHSKLSKKLDAAVPCTDVKSAVLFD 782 (952)
Q Consensus 703 efVldlL~~~k~krVLDIGCGeG~ll~~LAr~g~~~~qVVGVDISeemLe~ArkrLsa~la~~~~~l~Pr~~~~nVtf~q 782 (952)
..+.+.+...++.+|||||||+|.++..+++..+....|+|+|+++++++.|++++.. .+..++.+.+
T Consensus 70 a~ll~~L~i~~g~~VLDIG~GtG~~a~~LA~~~~~~g~VvgVDis~~~l~~Ar~~l~~------------~g~~nV~~i~ 137 (322)
T PRK13943 70 ALFMEWVGLDKGMRVLEIGGGTGYNAAVMSRVVGEKGLVVSVEYSRKICEIAKRNVRR------------LGIENVIFVC 137 (322)
T ss_pred HHHHHhcCCCCCCEEEEEeCCccHHHHHHHHhcCCCCEEEEEECCHHHHHHHHHHHHH------------cCCCcEEEEe
Confidence 3455555556778999999999999999987653234799999999999999887642 2345799999
Q ss_pred cCccccCCCCCCccEEEEccccccCChhHHHHHHHHHHHccCCC-EEEEEe
Q 002218 783 GSITVFDSRLHGFDIGTCLEVIEHMEEDEASQFGNIVLSSFRPR-ILIVST 832 (952)
Q Consensus 783 GDa~dLpf~d~sFDVVVcieVIEHL~dD~l~~L~eeI~RvLKPG-~LIIST 832 (952)
+|+.+.......||+|++...+++++ +.+.+.|+|| .+++..
T Consensus 138 gD~~~~~~~~~~fD~Ii~~~g~~~ip--------~~~~~~LkpgG~Lvv~~ 180 (322)
T PRK13943 138 GDGYYGVPEFAPYDVIFVTVGVDEVP--------ETWFTQLKEGGRVIVPI 180 (322)
T ss_pred CChhhcccccCCccEEEECCchHHhH--------HHHHHhcCCCCEEEEEe
Confidence 99877665567899999987766654 2367789998 666643
No 91
>PF01135 PCMT: Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT); InterPro: IPR000682 Protein-L-isoaspartate(D-aspartate) O-methyltransferase (2.1.1.77 from EC) (PCMT) [] (which is also known as L-isoaspartyl protein carboxyl methyltransferase) is an enzyme that catalyses the transfer of a methyl group from S-adenosylmethionine to the free carboxyl groups of D-aspartyl or L-isoaspartyl residues in a variety of peptides and proteins. The enzyme does not act on normal L-aspartyl residues L-isoaspartyl and D-aspartyl are the products of the spontaneous deamidation and/or isomerisation of normal L-aspartyl and L-asparaginyl residues in proteins. PCMT plays a role in the repair and/or degradation of these damaged proteins; the enzymatic methyl esterification of the abnormal residues can lead to their conversion to normal L-aspartyl residues. The SAM domain is present in most of these proteins.; GO: 0004719 protein-L-isoaspartate (D-aspartate) O-methyltransferase activity, 0006464 protein modification process; PDB: 3LBF_A 1DL5_B 1JG3_B 1JG2_A 1JG1_A 1JG4_A 2YXE_A 2PBF_B 1VBF_C 1R18_A ....
Probab=98.87 E-value=7.1e-09 Score=108.63 Aligned_cols=115 Identities=15% Similarity=0.177 Sum_probs=86.8
Q ss_pred HHHHHHHHHHhhcCCCCEEEEEcCccchHHHHHhcCCCCCceEEEEeCChHHHHHHHHHHhhhhhcccccCCCCCCCccE
Q 002218 699 KQRVEYALQHIKESCATTLVDFGCGSGSLLDSLLDYPTALEKIVGVDISQKSLSRAAKIIHSKLSKKLDAAVPCTDVKSA 778 (952)
Q Consensus 699 ~QR~efVldlL~~~k~krVLDIGCGeG~ll~~LAr~g~~~~qVVGVDISeemLe~ArkrLsa~la~~~~~l~Pr~~~~nV 778 (952)
+..+..+++.+...++.+|||||||+|+++..|+...++...|++||+++..++.|++++... +..+|
T Consensus 58 P~~~a~~l~~L~l~pg~~VLeIGtGsGY~aAlla~lvg~~g~Vv~vE~~~~l~~~A~~~l~~~------------~~~nv 125 (209)
T PF01135_consen 58 PSMVARMLEALDLKPGDRVLEIGTGSGYQAALLAHLVGPVGRVVSVERDPELAERARRNLARL------------GIDNV 125 (209)
T ss_dssp HHHHHHHHHHTTC-TT-EEEEES-TTSHHHHHHHHHHSTTEEEEEEESBHHHHHHHHHHHHHH------------TTHSE
T ss_pred HHHHHHHHHHHhcCCCCEEEEecCCCcHHHHHHHHhcCccceEEEECccHHHHHHHHHHHHHh------------ccCce
Confidence 444556777778888999999999999999988876544568999999999999999988642 34589
Q ss_pred EEEEcCccccCCCCCCccEEEEccccccCChhHHHHHHHHHHHccCCC-EEEEEec
Q 002218 779 VLFDGSITVFDSRLHGFDIGTCLEVIEHMEEDEASQFGNIVLSSFRPR-ILIVSTP 833 (952)
Q Consensus 779 tf~qGDa~dLpf~d~sFDVVVcieVIEHL~dD~l~~L~eeI~RvLKPG-~LIISTP 833 (952)
.+.++|..........||.|++....+.++ ..+...|++| .++++.-
T Consensus 126 ~~~~gdg~~g~~~~apfD~I~v~~a~~~ip--------~~l~~qL~~gGrLV~pi~ 173 (209)
T PF01135_consen 126 EVVVGDGSEGWPEEAPFDRIIVTAAVPEIP--------EALLEQLKPGGRLVAPIG 173 (209)
T ss_dssp EEEES-GGGTTGGG-SEEEEEESSBBSS----------HHHHHTEEEEEEEEEEES
T ss_pred eEEEcchhhccccCCCcCEEEEeeccchHH--------HHHHHhcCCCcEEEEEEc
Confidence 999999877555667899999999888777 3467789999 6666544
No 92
>TIGR03533 L3_gln_methyl protein-(glutamine-N5) methyltransferase, ribosomal protein L3-specific. Members of this protein family methylate ribosomal protein L3 on a glutamine side chain. This family is related to HemK, a protein-glutamine methyltranferase for peptide chain release factors.
Probab=98.85 E-value=4.5e-08 Score=106.49 Aligned_cols=110 Identities=16% Similarity=0.139 Sum_probs=79.8
Q ss_pred CCCCEEEEEcCccchHHHHHhcCCCCCceEEEEeCChHHHHHHHHHHhhhhhcccccCCCCCCCccEEEEEcCccccCCC
Q 002218 712 SCATTLVDFGCGSGSLLDSLLDYPTALEKIVGVDISQKSLSRAAKIIHSKLSKKLDAAVPCTDVKSAVLFDGSITVFDSR 791 (952)
Q Consensus 712 ~k~krVLDIGCGeG~ll~~LAr~g~~~~qVVGVDISeemLe~ArkrLsa~la~~~~~l~Pr~~~~nVtf~qGDa~dLpf~ 791 (952)
.++.+|||+|||+|.++..+++.. +..+|+|+|+|+.+++.|++++... ....+++++++|+.+. .+
T Consensus 120 ~~~~~vLDlG~GsG~i~~~la~~~-~~~~v~avDis~~al~~A~~n~~~~-----------~~~~~i~~~~~D~~~~-~~ 186 (284)
T TIGR03533 120 EPVKRILDLCTGSGCIAIACAYAF-PEAEVDAVDISPDALAVAEINIERH-----------GLEDRVTLIQSDLFAA-LP 186 (284)
T ss_pred CCCCEEEEEeCchhHHHHHHHHHC-CCCEEEEEECCHHHHHHHHHHHHHc-----------CCCCcEEEEECchhhc-cC
Confidence 345799999999999999999875 3479999999999999999876421 1123699999998653 23
Q ss_pred CCCccEEEEc------cccccCCh-----------------hHHHHHHHHHHHccCCC-EEEEEecC
Q 002218 792 LHGFDIGTCL------EVIEHMEE-----------------DEASQFGNIVLSSFRPR-ILIVSTPN 834 (952)
Q Consensus 792 d~sFDVVVci------eVIEHL~d-----------------D~l~~L~eeI~RvLKPG-~LIISTPN 834 (952)
...||+|++. ..+.++.+ +....+.+.+.++|+|| .+++.+.+
T Consensus 187 ~~~fD~Iv~NPPy~~~~~~~~l~~~~~~ep~~al~gg~dGl~~~~~il~~a~~~L~~gG~l~~e~g~ 253 (284)
T TIGR03533 187 GRKYDLIVSNPPYVDAEDMADLPAEYHHEPELALASGEDGLDLVRRILAEAADHLNENGVLVVEVGN 253 (284)
T ss_pred CCCccEEEECCCCCCccchhhCCHhhhcCHHHHhcCCCcHHHHHHHHHHHHHHhcCCCCEEEEEECc
Confidence 4579999985 12222221 11245566788999998 77776665
No 93
>TIGR00406 prmA ribosomal protein L11 methyltransferase. Ribosomal protein L11 methyltransferase is an S-adenosyl-L-methionine-dependent methyltransferase required for the modification of ribosomal protein L11. This protein is found in bacteria and (with a probable transit peptide) in Arabidopsis.
Probab=98.83 E-value=3.2e-08 Score=107.58 Aligned_cols=102 Identities=21% Similarity=0.162 Sum_probs=75.8
Q ss_pred CCCEEEEEcCccchHHHHHhcCCCCCceEEEEeCChHHHHHHHHHHhhhhhcccccCCCCCCCccEEEEEcCccccCCCC
Q 002218 713 CATTLVDFGCGSGSLLDSLLDYPTALEKIVGVDISQKSLSRAAKIIHSKLSKKLDAAVPCTDVKSAVLFDGSITVFDSRL 792 (952)
Q Consensus 713 k~krVLDIGCGeG~ll~~LAr~g~~~~qVVGVDISeemLe~ArkrLsa~la~~~~~l~Pr~~~~nVtf~qGDa~dLpf~d 792 (952)
++++|||+|||+|.++..+++.+. .+|+|+|+|+.+++.|++++... .....+.+..++... ...
T Consensus 159 ~g~~VLDvGcGsG~lai~aa~~g~--~~V~avDid~~al~~a~~n~~~n-----------~~~~~~~~~~~~~~~--~~~ 223 (288)
T TIGR00406 159 KDKNVIDVGCGSGILSIAALKLGA--AKVVGIDIDPLAVESARKNAELN-----------QVSDRLQVKLIYLEQ--PIE 223 (288)
T ss_pred CCCEEEEeCCChhHHHHHHHHcCC--CeEEEEECCHHHHHHHHHHHHHc-----------CCCcceEEEeccccc--ccC
Confidence 568999999999999999888763 68999999999999998876421 111246666666332 235
Q ss_pred CCccEEEEccccccCChhHHHHHHHHHHHccCCC-EEEEEecC
Q 002218 793 HGFDIGTCLEVIEHMEEDEASQFGNIVLSSFRPR-ILIVSTPN 834 (952)
Q Consensus 793 ~sFDVVVcieVIEHL~dD~l~~L~eeI~RvLKPG-~LIISTPN 834 (952)
++||+|++..+.++ ...+..++.++|||| .++++...
T Consensus 224 ~~fDlVvan~~~~~-----l~~ll~~~~~~LkpgG~li~sgi~ 261 (288)
T TIGR00406 224 GKADVIVANILAEV-----IKELYPQFSRLVKPGGWLILSGIL 261 (288)
T ss_pred CCceEEEEecCHHH-----HHHHHHHHHHHcCCCcEEEEEeCc
Confidence 68999999765433 334556799999999 77777654
No 94
>TIGR00536 hemK_fam HemK family putative methylases. The gene hemK from E. coli was found to contribute to heme biosynthesis and originally suggested to be protoporphyrinogen oxidase (Medline 95189105). Functional analysis of the nearest homolog in Saccharomyces cerevisiae, YNL063w, finds it is not protoporphyrinogen oxidase and sequence analysis suggests that HemK homologs have S-adenosyl-methionine-dependent methyltransferase activity (Medline 99237242). Homologs are found, usually in a single copy, in nearly all completed genomes, but varying somewhat in apparent domain architecture. Both E. coli and H. influenzae have two members rather than one. The members from the Mycoplasmas have an additional C-terminal domain.
Probab=98.83 E-value=4.9e-08 Score=105.73 Aligned_cols=107 Identities=18% Similarity=0.226 Sum_probs=79.7
Q ss_pred CEEEEEcCccchHHHHHhcCCCCCceEEEEeCChHHHHHHHHHHhhhhhcccccCCCCCCC-ccEEEEEcCccccCCCCC
Q 002218 715 TTLVDFGCGSGSLLDSLLDYPTALEKIVGVDISQKSLSRAAKIIHSKLSKKLDAAVPCTDV-KSAVLFDGSITVFDSRLH 793 (952)
Q Consensus 715 krVLDIGCGeG~ll~~LAr~g~~~~qVVGVDISeemLe~ArkrLsa~la~~~~~l~Pr~~~-~nVtf~qGDa~dLpf~d~ 793 (952)
.+|||+|||+|.++..++... +..+|+|+|+|+++++.|+++.... +. .+++++++|+.+. ....
T Consensus 116 ~~vLDlG~GsG~i~l~la~~~-~~~~v~avDis~~al~~a~~n~~~~------------~~~~~v~~~~~d~~~~-~~~~ 181 (284)
T TIGR00536 116 LHILDLGTGSGCIALALAYEF-PNAEVIAVDISPDALAVAEENAEKN------------QLEHRVEFIQSNLFEP-LAGQ 181 (284)
T ss_pred CEEEEEeccHhHHHHHHHHHC-CCCEEEEEECCHHHHHHHHHHHHHc------------CCCCcEEEEECchhcc-CcCC
Confidence 699999999999999999875 3479999999999999999876421 22 2599999998763 2334
Q ss_pred CccEEEEc-------------cccccCCh----------hHHHHHHHHHHHccCCC-EEEEEecCC
Q 002218 794 GFDIGTCL-------------EVIEHMEE----------DEASQFGNIVLSSFRPR-ILIVSTPNY 835 (952)
Q Consensus 794 sFDVVVci-------------eVIEHL~d----------D~l~~L~eeI~RvLKPG-~LIISTPN~ 835 (952)
.||+|++. +++.|-+. +....+.+.+.++|+|| .+++.+.+.
T Consensus 182 ~fDlIvsNPPyi~~~~~~~~~~~~~~eP~~AL~gg~dgl~~~~~ii~~a~~~L~~gG~l~~e~g~~ 247 (284)
T TIGR00536 182 KIDIIVSNPPYIDEEDLADLPNVVRFEPLLALVGGDDGLNILRQIIELAPDYLKPNGFLVCEIGNW 247 (284)
T ss_pred CccEEEECCCCCCcchhhcCCcccccCcHHHhcCCCcHHHHHHHHHHHHHHhccCCCEEEEEECcc
Confidence 79999995 33444431 13445667789999998 776666553
No 95
>PRK04266 fibrillarin; Provisional
Probab=98.83 E-value=3.5e-08 Score=104.43 Aligned_cols=106 Identities=8% Similarity=0.078 Sum_probs=77.5
Q ss_pred hhcCCCCEEEEEcCccchHHHHHhcCCCCCceEEEEeCChHHHHHHHHHHhhhhhcccccCCCCCCCccEEEEEcCcccc
Q 002218 709 IKESCATTLVDFGCGSGSLLDSLLDYPTALEKIVGVDISQKSLSRAAKIIHSKLSKKLDAAVPCTDVKSAVLFDGSITVF 788 (952)
Q Consensus 709 L~~~k~krVLDIGCGeG~ll~~LAr~g~~~~qVVGVDISeemLe~ArkrLsa~la~~~~~l~Pr~~~~nVtf~qGDa~dL 788 (952)
+...++.+|||+|||+|.++..+++..+ ..+|+|+|++++|++.+.++... ..++.++.+|+.+.
T Consensus 68 l~i~~g~~VlD~G~G~G~~~~~la~~v~-~g~V~avD~~~~ml~~l~~~a~~--------------~~nv~~i~~D~~~~ 132 (226)
T PRK04266 68 FPIKKGSKVLYLGAASGTTVSHVSDIVE-EGVVYAVEFAPRPMRELLEVAEE--------------RKNIIPILADARKP 132 (226)
T ss_pred CCCCCCCEEEEEccCCCHHHHHHHHhcC-CCeEEEEECCHHHHHHHHHHhhh--------------cCCcEEEECCCCCc
Confidence 4555778999999999999999998752 36899999999999987665421 14789999998752
Q ss_pred C---CCCCCccEEEEccccccCC-hhHHHHHHHHHHHccCCC-EEEEEecC
Q 002218 789 D---SRLHGFDIGTCLEVIEHME-EDEASQFGNIVLSSFRPR-ILIVSTPN 834 (952)
Q Consensus 789 p---f~d~sFDVVVcieVIEHL~-dD~l~~L~eeI~RvLKPG-~LIISTPN 834 (952)
. .....||+|++. +. +++...+.+++.++|||| .++|+.+-
T Consensus 133 ~~~~~l~~~~D~i~~d-----~~~p~~~~~~L~~~~r~LKpGG~lvI~v~~ 178 (226)
T PRK04266 133 ERYAHVVEKVDVIYQD-----VAQPNQAEIAIDNAEFFLKDGGYLLLAIKA 178 (226)
T ss_pred chhhhccccCCEEEEC-----CCChhHHHHHHHHHHHhcCCCcEEEEEEec
Confidence 1 113469999853 32 233344556899999999 77777653
No 96
>PF03291 Pox_MCEL: mRNA capping enzyme; InterPro: IPR004971 This is a family of viral mRNA capping enzymes. The enzyme catalyses the first two reactions in the mRNA cap formation pathway. It is a heterodimer consisting of a large and small subunit. This entry is the large subunit. ; GO: 0006370 mRNA capping; PDB: 3EPP_A 3BGV_C 2VDW_C 1RI5_A 1RI3_A 1RI1_A 1Z3C_A 1RI2_A 2HV9_A 1RI4_A.
Probab=98.83 E-value=1.7e-08 Score=112.37 Aligned_cols=121 Identities=23% Similarity=0.280 Sum_probs=81.4
Q ss_pred CCCEEEEEcCccchHHHHHhcCCCCCceEEEEeCChHHHHHHHHHHhhhhhcccccCCCCCCCccEEEEEcCcccc----
Q 002218 713 CATTLVDFGCGSGSLLDSLLDYPTALEKIVGVDISQKSLSRAAKIIHSKLSKKLDAAVPCTDVKSAVLFDGSITVF---- 788 (952)
Q Consensus 713 k~krVLDIGCGeG~ll~~LAr~g~~~~qVVGVDISeemLe~ArkrLsa~la~~~~~l~Pr~~~~nVtf~qGDa~dL---- 788 (952)
++.+|||+|||-|.-+......+ ...++|+||+...|+.|++|+........ ... ....-...++.+|...-
T Consensus 62 ~~~~VLDl~CGkGGDL~Kw~~~~--i~~~vg~Dis~~si~ea~~Ry~~~~~~~~-~~~-~~~~f~a~f~~~D~f~~~l~~ 137 (331)
T PF03291_consen 62 PGLTVLDLCCGKGGDLQKWQKAK--IKHYVGIDISEESIEEARERYKQLKKRNN-SKQ-YRFDFIAEFIAADCFSESLRE 137 (331)
T ss_dssp TT-EEEEET-TTTTTHHHHHHTT---SEEEEEES-HHHHHHHHHHHHHHHTSTT--HT-SEECCEEEEEESTTCCSHHHC
T ss_pred CCCeEEEecCCCchhHHHHHhcC--CCEEEEEeCCHHHHHHHHHHHHHhccccc-ccc-ccccchhheeccccccchhhh
Confidence 56899999999888665555543 48999999999999999999843221100 000 00112567888887532
Q ss_pred --CCCCCCccEEEEccccccCC--hhHHHHHHHHHHHccCCC-EEEEEecCCch
Q 002218 789 --DSRLHGFDIGTCLEVIEHME--EDEASQFGNIVLSSFRPR-ILIVSTPNYEY 837 (952)
Q Consensus 789 --pf~d~sFDVVVcieVIEHL~--dD~l~~L~eeI~RvLKPG-~LIISTPN~ef 837 (952)
+.....||+|.|...|||.- ++.+..|++++.+.|+|| .+|.|||+.+.
T Consensus 138 ~~~~~~~~FDvVScQFalHY~Fese~~ar~~l~Nvs~~Lk~GG~FIgT~~d~~~ 191 (331)
T PF03291_consen 138 KLPPRSRKFDVVSCQFALHYAFESEEKARQFLKNVSSLLKPGGYFIGTTPDSDE 191 (331)
T ss_dssp TSSSTTS-EEEEEEES-GGGGGSSHHHHHHHHHHHHHTEEEEEEEEEEEE-HHH
T ss_pred hccccCCCcceeehHHHHHHhcCCHHHHHHHHHHHHHhcCCCCEEEEEecCHHH
Confidence 22235899999999999985 455667888999999999 88999998643
No 97
>PRK00517 prmA ribosomal protein L11 methyltransferase; Reviewed
Probab=98.80 E-value=3.4e-08 Score=105.01 Aligned_cols=95 Identities=22% Similarity=0.270 Sum_probs=69.7
Q ss_pred CCCCEEEEEcCccchHHHHHhcCCCCCceEEEEeCChHHHHHHHHHHhhhhhcccccCCCCCCC-ccEEEEEcCccccCC
Q 002218 712 SCATTLVDFGCGSGSLLDSLLDYPTALEKIVGVDISQKSLSRAAKIIHSKLSKKLDAAVPCTDV-KSAVLFDGSITVFDS 790 (952)
Q Consensus 712 ~k~krVLDIGCGeG~ll~~LAr~g~~~~qVVGVDISeemLe~ArkrLsa~la~~~~~l~Pr~~~-~nVtf~qGDa~dLpf 790 (952)
.++.+|||+|||+|.++..+++.+. .+|+|+|+|+.+++.|++++... +. ..+.+..++
T Consensus 118 ~~~~~VLDiGcGsG~l~i~~~~~g~--~~v~giDis~~~l~~A~~n~~~~------------~~~~~~~~~~~~------ 177 (250)
T PRK00517 118 LPGKTVLDVGCGSGILAIAAAKLGA--KKVLAVDIDPQAVEAARENAELN------------GVELNVYLPQGD------ 177 (250)
T ss_pred CCCCEEEEeCCcHHHHHHHHHHcCC--CeEEEEECCHHHHHHHHHHHHHc------------CCCceEEEccCC------
Confidence 3678999999999999998888773 46999999999999999876421 11 234443332
Q ss_pred CCCCccEEEEccccccCChhHHHHHHHHHHHccCCC-EEEEEec
Q 002218 791 RLHGFDIGTCLEVIEHMEEDEASQFGNIVLSSFRPR-ILIVSTP 833 (952)
Q Consensus 791 ~d~sFDVVVcieVIEHL~dD~l~~L~eeI~RvLKPG-~LIISTP 833 (952)
..||+|++.... +....+.+++.++|||| .++++..
T Consensus 178 --~~fD~Vvani~~-----~~~~~l~~~~~~~LkpgG~lilsgi 214 (250)
T PRK00517 178 --LKADVIVANILA-----NPLLELAPDLARLLKPGGRLILSGI 214 (250)
T ss_pred --CCcCEEEEcCcH-----HHHHHHHHHHHHhcCCCcEEEEEEC
Confidence 279999986432 33445566799999998 7776643
No 98
>KOG1541 consensus Predicted protein carboxyl methylase [General function prediction only]
Probab=98.80 E-value=2.6e-08 Score=105.05 Aligned_cols=114 Identities=22% Similarity=0.274 Sum_probs=85.9
Q ss_pred hHHHHHHHHHHHhhcC--CCCEEEEEcCccchHHHHHhcCCCCCceEEEEeCChHHHHHHHHHHhhhhhcccccCCCCCC
Q 002218 697 LSKQRVEYALQHIKES--CATTLVDFGCGSGSLLDSLLDYPTALEKIVGVDISQKSLSRAAKIIHSKLSKKLDAAVPCTD 774 (952)
Q Consensus 697 L~~QR~efVldlL~~~--k~krVLDIGCGeG~ll~~LAr~g~~~~qVVGVDISeemLe~ArkrLsa~la~~~~~l~Pr~~ 774 (952)
+...+.+..++++... +..-|||||||+|.-+..|...| ...+|||||+.||+.|.++. +
T Consensus 32 IQ~em~eRaLELLalp~~~~~~iLDIGCGsGLSg~vL~~~G---h~wiGvDiSpsML~~a~~~e---~------------ 93 (270)
T KOG1541|consen 32 IQAEMAERALELLALPGPKSGLILDIGCGSGLSGSVLSDSG---HQWIGVDISPSMLEQAVERE---L------------ 93 (270)
T ss_pred ehHHHHHHHHHHhhCCCCCCcEEEEeccCCCcchheeccCC---ceEEeecCCHHHHHHHHHhh---h------------
Confidence 3344455555655443 46789999999999999998887 89999999999999997631 1
Q ss_pred CccEEEEEcCc-cccCCCCCCccEEEEccccccC---------ChhHHHHHHHHHHHccCCC-EEEE
Q 002218 775 VKSAVLFDGSI-TVFDSRLHGFDIGTCLEVIEHM---------EEDEASQFGNIVLSSFRPR-ILIV 830 (952)
Q Consensus 775 ~~nVtf~qGDa-~dLpf~d~sFDVVVcieVIEHL---------~dD~l~~L~eeI~RvLKPG-~LII 830 (952)
.-+++.+|+ +-+||+.+.||.++++..|.++ +...+..|...++.+|++| ..++
T Consensus 94 --egdlil~DMG~GlpfrpGtFDg~ISISAvQWLcnA~~s~~~P~~Rl~~FF~tLy~~l~rg~raV~ 158 (270)
T KOG1541|consen 94 --EGDLILCDMGEGLPFRPGTFDGVISISAVQWLCNADKSLHVPKKRLLRFFGTLYSCLKRGARAVL 158 (270)
T ss_pred --hcCeeeeecCCCCCCCCCccceEEEeeeeeeecccCccccChHHHHHHHhhhhhhhhccCceeEE
Confidence 235666776 4589999999999999888665 3344556666799999999 5544
No 99
>PRK09328 N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase; Provisional
Probab=98.78 E-value=7.6e-08 Score=102.06 Aligned_cols=115 Identities=18% Similarity=0.174 Sum_probs=80.7
Q ss_pred HHHHHHhhcCCCCEEEEEcCccchHHHHHhcCCCCCceEEEEeCChHHHHHHHHHHhhhhhcccccCCCCCCCccEEEEE
Q 002218 703 EYALQHIKESCATTLVDFGCGSGSLLDSLLDYPTALEKIVGVDISQKSLSRAAKIIHSKLSKKLDAAVPCTDVKSAVLFD 782 (952)
Q Consensus 703 efVldlL~~~k~krVLDIGCGeG~ll~~LAr~g~~~~qVVGVDISeemLe~ArkrLsa~la~~~~~l~Pr~~~~nVtf~q 782 (952)
+.+...+...++.+|||+|||+|.++..++... +..+++|+|+|+.+++.|++++.. ....++.+++
T Consensus 98 ~~~~~~~~~~~~~~vLDiG~GsG~~~~~la~~~-~~~~v~~iDis~~~l~~a~~n~~~------------~~~~~i~~~~ 164 (275)
T PRK09328 98 EWALEALLLKEPLRVLDLGTGSGAIALALAKER-PDAEVTAVDISPEALAVARRNAKH------------GLGARVEFLQ 164 (275)
T ss_pred HHHHHhccccCCCEEEEEcCcHHHHHHHHHHHC-CCCEEEEEECCHHHHHHHHHHHHh------------CCCCcEEEEE
Confidence 334444444567899999999999999998876 457999999999999999887641 1234799999
Q ss_pred cCccccCCCCCCccEEEEcc------ccccCChh------------------HHHHHHHHHHHccCCC-EEEEE
Q 002218 783 GSITVFDSRLHGFDIGTCLE------VIEHMEED------------------EASQFGNIVLSSFRPR-ILIVS 831 (952)
Q Consensus 783 GDa~dLpf~d~sFDVVVcie------VIEHL~dD------------------~l~~L~eeI~RvLKPG-~LIIS 831 (952)
+|+.+.. ..+.||+|++.- .++.+.++ ....+.+++.++|+|| .+++.
T Consensus 165 ~d~~~~~-~~~~fD~Iv~npPy~~~~~~~~~~~~v~~~ep~~al~~g~~g~~~~~~~~~~~~~~Lk~gG~l~~e 237 (275)
T PRK09328 165 GDWFEPL-PGGRFDLIVSNPPYIPEADIHLLQPEVRDHEPHLALFGGEDGLDFYRRIIEQAPRYLKPGGWLLLE 237 (275)
T ss_pred ccccCcC-CCCceeEEEECCCcCCcchhhhCCchhhhcCCchhhcCCCCHHHHHHHHHHHHHHhcccCCEEEEE
Confidence 9985532 256899999841 11212211 1245566788999998 66553
No 100
>COG2518 Pcm Protein-L-isoaspartate carboxylmethyltransferase [Posttranslational modification, protein turnover, chaperones]
Probab=98.77 E-value=7.1e-08 Score=101.31 Aligned_cols=109 Identities=14% Similarity=0.180 Sum_probs=92.4
Q ss_pred HHHHHHHhhcCCCCEEEEEcCccchHHHHHhcCCCCCceEEEEeCChHHHHHHHHHHhhhhhcccccCCCCCCCccEEEE
Q 002218 702 VEYALQHIKESCATTLVDFGCGSGSLLDSLLDYPTALEKIVGVDISQKSLSRAAKIIHSKLSKKLDAAVPCTDVKSAVLF 781 (952)
Q Consensus 702 ~efVldlL~~~k~krVLDIGCGeG~ll~~LAr~g~~~~qVVGVDISeemLe~ArkrLsa~la~~~~~l~Pr~~~~nVtf~ 781 (952)
...+.+.+...++.+|||||||+|+.+..|++.. .+|+.||+.++..+.|++++.. -+..||.+.
T Consensus 61 vA~m~~~L~~~~g~~VLEIGtGsGY~aAvla~l~---~~V~siEr~~~L~~~A~~~L~~------------lg~~nV~v~ 125 (209)
T COG2518 61 VARMLQLLELKPGDRVLEIGTGSGYQAAVLARLV---GRVVSIERIEELAEQARRNLET------------LGYENVTVR 125 (209)
T ss_pred HHHHHHHhCCCCCCeEEEECCCchHHHHHHHHHh---CeEEEEEEcHHHHHHHHHHHHH------------cCCCceEEE
Confidence 3456777788899999999999999999999988 6999999999999999998763 355679999
Q ss_pred EcCccccCCCCCCccEEEEccccccCChhHHHHHHHHHHHccCCC-EEEEEec
Q 002218 782 DGSITVFDSRLHGFDIGTCLEVIEHMEEDEASQFGNIVLSSFRPR-ILIVSTP 833 (952)
Q Consensus 782 qGDa~dLpf~d~sFDVVVcieVIEHL~dD~l~~L~eeI~RvLKPG-~LIISTP 833 (952)
+||...--.....||.|+.......+| +.+...|||| .++++.-
T Consensus 126 ~gDG~~G~~~~aPyD~I~Vtaaa~~vP--------~~Ll~QL~~gGrlv~PvG 170 (209)
T COG2518 126 HGDGSKGWPEEAPYDRIIVTAAAPEVP--------EALLDQLKPGGRLVIPVG 170 (209)
T ss_pred ECCcccCCCCCCCcCEEEEeeccCCCC--------HHHHHhcccCCEEEEEEc
Confidence 999987665678999999999999998 3466789998 7777654
No 101
>COG2264 PrmA Ribosomal protein L11 methylase [Translation, ribosomal structure and biogenesis]
Probab=98.76 E-value=4.8e-08 Score=107.41 Aligned_cols=104 Identities=21% Similarity=0.228 Sum_probs=76.6
Q ss_pred CCCEEEEEcCccchHHHHHhcCCCCCceEEEEeCChHHHHHHHHHHhhhhhcccccCCCCCCCcc-EEEEEcCccccCCC
Q 002218 713 CATTLVDFGCGSGSLLDSLLDYPTALEKIVGVDISQKSLSRAAKIIHSKLSKKLDAAVPCTDVKS-AVLFDGSITVFDSR 791 (952)
Q Consensus 713 k~krVLDIGCGeG~ll~~LAr~g~~~~qVVGVDISeemLe~ArkrLsa~la~~~~~l~Pr~~~~n-Vtf~qGDa~dLpf~ 791 (952)
++++|||+|||+|.++...++.|. .+|+|+|+++-+++.|+++... ++... ++....+....+ .
T Consensus 162 ~g~~vlDvGcGSGILaIAa~kLGA--~~v~g~DiDp~AV~aa~eNa~~------------N~v~~~~~~~~~~~~~~~-~ 226 (300)
T COG2264 162 KGKTVLDVGCGSGILAIAAAKLGA--KKVVGVDIDPQAVEAARENARL------------NGVELLVQAKGFLLLEVP-E 226 (300)
T ss_pred CCCEEEEecCChhHHHHHHHHcCC--ceEEEecCCHHHHHHHHHHHHH------------cCCchhhhcccccchhhc-c
Confidence 789999999999999999999985 7899999999999999987642 22221 222222222222 3
Q ss_pred CCCccEEEEccccccCChhHHHHHHHHHHHccCCC-EEEEEecCCc
Q 002218 792 LHGFDIGTCLEVIEHMEEDEASQFGNIVLSSFRPR-ILIVSTPNYE 836 (952)
Q Consensus 792 d~sFDVVVcieVIEHL~dD~l~~L~eeI~RvLKPG-~LIISTPN~e 836 (952)
.+.||+|+++=. .++...+...+.+.+||| .+|++-.-.+
T Consensus 227 ~~~~DvIVANIL-----A~vl~~La~~~~~~lkpgg~lIlSGIl~~ 267 (300)
T COG2264 227 NGPFDVIVANIL-----AEVLVELAPDIKRLLKPGGRLILSGILED 267 (300)
T ss_pred cCcccEEEehhh-----HHHHHHHHHHHHHHcCCCceEEEEeehHh
Confidence 468999999643 356667778899999998 8888765433
No 102
>PF05724 TPMT: Thiopurine S-methyltransferase (TPMT); InterPro: IPR008854 This family consists of thiopurine S-methyltransferase proteins from both eukaryotes and prokaryotes. Thiopurine S-methyltransferase (TPMT) is a cytosolic enzyme that catalyses S-methylation of aromatic and heterocyclic sulphydryl compounds, including anticancer and immunosuppressive thiopurines [].; GO: 0008119 thiopurine S-methyltransferase activity, 0008152 metabolic process, 0005737 cytoplasm; PDB: 1PJZ_A 2H11_A 2BZG_A 3LCC_A 3BGD_A 2GB4_A 3BGI_B.
Probab=98.75 E-value=2.9e-08 Score=104.62 Aligned_cols=158 Identities=15% Similarity=0.160 Sum_probs=105.2
Q ss_pred hhcCCCCEEEEEcCccchHHHHHhcCCCCCceEEEEeCChHHHHHHHHHHhhhhhcccccCCC--CCCCccEEEEEcCcc
Q 002218 709 IKESCATTLVDFGCGSGSLLDSLLDYPTALEKIVGVDISQKSLSRAAKIIHSKLSKKLDAAVP--CTDVKSAVLFDGSIT 786 (952)
Q Consensus 709 L~~~k~krVLDIGCGeG~ll~~LAr~g~~~~qVVGVDISeemLe~ArkrLsa~la~~~~~l~P--r~~~~nVtf~qGDa~ 786 (952)
+....+.+||+.|||.|.-+..|+++| .+|+|||+|+.+++.+.+.... ......... .....+|++++||+.
T Consensus 33 l~~~~~~rvLvPgCG~g~D~~~La~~G---~~VvGvDls~~Ai~~~~~e~~~--~~~~~~~~~~~~~~~~~i~~~~gDfF 107 (218)
T PF05724_consen 33 LALKPGGRVLVPGCGKGYDMLWLAEQG---HDVVGVDLSPTAIEQAFEENNL--EPTVTSVGGFKRYQAGRITIYCGDFF 107 (218)
T ss_dssp HTTSTSEEEEETTTTTSCHHHHHHHTT---EEEEEEES-HHHHHHHHHHCTT--EEECTTCTTEEEETTSSEEEEES-TT
T ss_pred cCCCCCCeEEEeCCCChHHHHHHHHCC---CeEEEEecCHHHHHHHHHHhcc--CCCcccccceeeecCCceEEEEcccc
Confidence 344566799999999999999999998 8999999999999998543221 000000000 012347899999999
Q ss_pred ccCCCC-CCccEEEEccccccCChhHHHHHHHHHHHccCCC-EEEEEecCCchhHHHHhhccCccCCCCcchhhhccccc
Q 002218 787 VFDSRL-HGFDIGTCLEVIEHMEEDEASQFGNIVLSSFRPR-ILIVSTPNYEYNAILQKSSSTIQEDDPDEKTQLQSCKF 864 (952)
Q Consensus 787 dLpf~d-~sFDVVVcieVIEHL~dD~l~~L~eeI~RvLKPG-~LIISTPN~efN~lf~~L~~~ta~eYPde~~g~~~~~f 864 (952)
+++... +.||+|+-...+.-|+++.+..+.+.+.++|+|| .+++.|-.+... ..
T Consensus 108 ~l~~~~~g~fD~iyDr~~l~Alpp~~R~~Ya~~l~~ll~p~g~~lLi~l~~~~~------------~~------------ 163 (218)
T PF05724_consen 108 ELPPEDVGKFDLIYDRTFLCALPPEMRERYAQQLASLLKPGGRGLLITLEYPQG------------EM------------ 163 (218)
T ss_dssp TGGGSCHHSEEEEEECSSTTTS-GGGHHHHHHHHHHCEEEEEEEEEEEEES-CS------------CS------------
T ss_pred cCChhhcCCceEEEEecccccCCHHHHHHHHHHHHHHhCCCCcEEEEEEEcCCc------------CC------------
Confidence 987654 5899999999999999999999999999999998 533333332100 00
Q ss_pred cCCCCccccCHHHHHHHHHHHHHHcCcEEEEEeecCCC
Q 002218 865 RNHDHKFEWTRDQFNCWATELAARHNYSVEFSGVGGSG 902 (952)
Q Consensus 865 Rh~DHkFEWTReEFqsWae~La~q~GYsVefsGVG~~p 902 (952)
..--|..+.+++.+ +.. -+|.++.....+..
T Consensus 164 --~GPPf~v~~~ev~~----l~~-~~f~i~~l~~~~~~ 194 (218)
T PF05724_consen 164 --EGPPFSVTEEEVRE----LFG-PGFEIEELEEEDSI 194 (218)
T ss_dssp --SSSS----HHHHHH----HHT-TTEEEEEEEEEE-T
T ss_pred --CCcCCCCCHHHHHH----Hhc-CCcEEEEEeccccc
Confidence 01124467888884 443 58888877665543
No 103
>KOG2899 consensus Predicted methyltransferase [General function prediction only]
Probab=98.75 E-value=1.4e-07 Score=100.78 Aligned_cols=195 Identities=21% Similarity=0.318 Sum_probs=118.2
Q ss_pred CCCCEEEEEcCccchHHHHHhcCCCCCceEEEEeCChHHHHHHHHHHhhhhhcccccCC--------------------C
Q 002218 712 SCATTLVDFGCGSGSLLDSLLDYPTALEKIVGVDISQKSLSRAAKIIHSKLSKKLDAAV--------------------P 771 (952)
Q Consensus 712 ~k~krVLDIGCGeG~ll~~LAr~g~~~~qVVGVDISeemLe~ArkrLsa~la~~~~~l~--------------------P 771 (952)
..++.+|||||..|.++..+++..+ ...|+|+||++..|+.|++.+.-..+.. -... +
T Consensus 57 f~~~~~LDIGCNsG~lt~~iak~F~-~r~iLGvDID~~LI~~Ark~~r~~~~~~-~~~~~~~~~~~~~~~~~is~~~~a~ 134 (288)
T KOG2899|consen 57 FEPKQALDIGCNSGFLTLSIAKDFG-PRRILGVDIDPVLIQRARKEIRFPCDHE-TEVSGKFPASFGVQFGPISQRNEAD 134 (288)
T ss_pred cCcceeEeccCCcchhHHHHHHhhc-cceeeEeeccHHHHHHHHHhcccccccc-ccccCCCcccccccccccccccccc
Confidence 4678999999999999999998763 3679999999999999998765322110 0000 0
Q ss_pred C----CCCccEEEEEcCcc-----ccCCCCCCccEEEEccccc--cCC--hhHHHHHHHHHHHccCCCEEEEEecCCchh
Q 002218 772 C----TDVKSAVLFDGSIT-----VFDSRLHGFDIGTCLEVIE--HME--EDEASQFGNIVLSSFRPRILIVSTPNYEYN 838 (952)
Q Consensus 772 r----~~~~nVtf~qGDa~-----dLpf~d~sFDVVVcieVIE--HL~--dD~l~~L~eeI~RvLKPG~LIISTPN~efN 838 (952)
+ .-+.++.+...+.. -+.+....||+|+|..+-- ||. ++-+..|...+.++|.||.++|..|-. |.
T Consensus 135 ~a~t~~~p~n~~f~~~n~vle~~dfl~~~~~~fDiIlcLSiTkWIHLNwgD~GL~~ff~kis~ll~pgGiLvvEPQp-Wk 213 (288)
T KOG2899|consen 135 RAFTTDFPDNVWFQKENYVLESDDFLDMIQPEFDIILCLSITKWIHLNWGDDGLRRFFRKISSLLHPGGILVVEPQP-WK 213 (288)
T ss_pred ccccccCCcchhcccccEEEecchhhhhccccccEEEEEEeeeeEecccccHHHHHHHHHHHHhhCcCcEEEEcCCc-hH
Confidence 0 00112222222111 1233457899999977633 443 455666667799999999777777763 44
Q ss_pred HHHHhhccCccCCCCcchhhhccccccCCCCccccCHHHHHHHHHHHHHHcCcEEEEEeecCC-CCCCCCccceeeeeec
Q 002218 839 AILQKSSSTIQEDDPDEKTQLQSCKFRNHDHKFEWTRDQFNCWATELAARHNYSVEFSGVGGS-GDREPGFASQIAVFRS 917 (952)
Q Consensus 839 ~lf~~L~~~ta~eYPde~~g~~~~~fRh~DHkFEWTReEFqsWae~La~q~GYsVefsGVG~~-p~ge~G~aTQIAVFrR 917 (952)
.+..+-. ....+.......+..++.|..|..+... |++- ..+++.. .....|+-.+|-+|++
T Consensus 214 sY~kaar--------------~~e~~~~ny~~i~lkp~~f~~~l~q~~v--gle~-~e~~~~~~~~~skgf~R~i~~y~K 276 (288)
T KOG2899|consen 214 SYKKAAR--------------RSEKLAANYFKIFLKPEDFEDWLNQIVV--GLES-VEDLGLIVSAASKGFDRPILLYRK 276 (288)
T ss_pred HHHHHHH--------------HHHHhhcCccceecCHHHHHhhhhhhhh--heee-eccccccccccCccccceeeeeec
Confidence 4332210 0111222333456789999988765422 4422 1222311 1235788999999999
Q ss_pred CCCCCCccc
Q 002218 918 RTPPEEDDL 926 (952)
Q Consensus 918 k~~~~~~~~ 926 (952)
+-......+
T Consensus 277 k~~~~~~~i 285 (288)
T KOG2899|consen 277 KLHPKTDAI 285 (288)
T ss_pred cCCCccCcC
Confidence 877665544
No 104
>PRK11188 rrmJ 23S rRNA methyltransferase J; Provisional
Probab=98.75 E-value=7.6e-08 Score=100.37 Aligned_cols=109 Identities=10% Similarity=0.079 Sum_probs=77.9
Q ss_pred CCCCEEEEEcCccchHHHHHhcCCCCCceEEEEeCChHHHHHHHHHHhhhhhcccccCCCCCCCccEEEEEcCccccC--
Q 002218 712 SCATTLVDFGCGSGSLLDSLLDYPTALEKIVGVDISQKSLSRAAKIIHSKLSKKLDAAVPCTDVKSAVLFDGSITVFD-- 789 (952)
Q Consensus 712 ~k~krVLDIGCGeG~ll~~LAr~g~~~~qVVGVDISeemLe~ArkrLsa~la~~~~~l~Pr~~~~nVtf~qGDa~dLp-- 789 (952)
.++.+|||||||+|.++..+++..++..+|+|||+++ | . ..++++++++|+.+.+
T Consensus 50 ~~~~~VLDlG~GtG~~t~~l~~~~~~~~~V~aVDi~~-~-----~-----------------~~~~v~~i~~D~~~~~~~ 106 (209)
T PRK11188 50 KPGMTVVDLGAAPGGWSQYAVTQIGDKGRVIACDILP-M-----D-----------------PIVGVDFLQGDFRDELVL 106 (209)
T ss_pred CCCCEEEEEcccCCHHHHHHHHHcCCCceEEEEeccc-c-----c-----------------CCCCcEEEecCCCChHHH
Confidence 3567999999999999999988754446999999988 1 0 1136899999998853
Q ss_pred ------CCCCCccEEEEccccccCChhH---------HHHHHHHHHHccCCC-EEEEEecCC-chhHHHHh
Q 002218 790 ------SRLHGFDIGTCLEVIEHMEEDE---------ASQFGNIVLSSFRPR-ILIVSTPNY-EYNAILQK 843 (952)
Q Consensus 790 ------f~d~sFDVVVcieVIEHL~dD~---------l~~L~eeI~RvLKPG-~LIISTPN~-efN~lf~~ 843 (952)
+...+||+|+|..+.++..... ...+.+++.++|||| .+++.+... ++..++..
T Consensus 107 ~~i~~~~~~~~~D~V~S~~~~~~~g~~~~d~~~~~~~~~~~L~~~~~~LkpGG~~vi~~~~~~~~~~~l~~ 177 (209)
T PRK11188 107 KALLERVGDSKVQVVMSDMAPNMSGTPAVDIPRAMYLVELALDMCRDVLAPGGSFVVKVFQGEGFDEYLRE 177 (209)
T ss_pred HHHHHHhCCCCCCEEecCCCCccCCChHHHHHHHHHHHHHHHHHHHHHcCCCCEEEEEEecCcCHHHHHHH
Confidence 4567899999977666554211 123456799999999 777755543 33444443
No 105
>PRK11805 N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase; Provisional
Probab=98.75 E-value=1.1e-07 Score=104.69 Aligned_cols=108 Identities=19% Similarity=0.156 Sum_probs=77.8
Q ss_pred CCEEEEEcCccchHHHHHhcCCCCCceEEEEeCChHHHHHHHHHHhhhhhcccccCCCCCCCccEEEEEcCccccCCCCC
Q 002218 714 ATTLVDFGCGSGSLLDSLLDYPTALEKIVGVDISQKSLSRAAKIIHSKLSKKLDAAVPCTDVKSAVLFDGSITVFDSRLH 793 (952)
Q Consensus 714 ~krVLDIGCGeG~ll~~LAr~g~~~~qVVGVDISeemLe~ArkrLsa~la~~~~~l~Pr~~~~nVtf~qGDa~dLpf~d~ 793 (952)
..+|||+|||+|.++..++... +..+|+|+|+|+.+++.|++++... ....+++++++|+.+.. +..
T Consensus 134 ~~~VLDlG~GsG~iai~la~~~-p~~~V~avDis~~al~~A~~n~~~~-----------~l~~~i~~~~~D~~~~l-~~~ 200 (307)
T PRK11805 134 VTRILDLCTGSGCIAIACAYAF-PDAEVDAVDISPDALAVAEINIERH-----------GLEDRVTLIESDLFAAL-PGR 200 (307)
T ss_pred CCEEEEEechhhHHHHHHHHHC-CCCEEEEEeCCHHHHHHHHHHHHHh-----------CCCCcEEEEECchhhhC-CCC
Confidence 3789999999999999998865 3479999999999999999886531 11236999999986532 345
Q ss_pred CccEEEEc------cccc-------cCCh----------hHHHHHHHHHHHccCCC-EEEEEecC
Q 002218 794 GFDIGTCL------EVIE-------HMEE----------DEASQFGNIVLSSFRPR-ILIVSTPN 834 (952)
Q Consensus 794 sFDVVVci------eVIE-------HL~d----------D~l~~L~eeI~RvLKPG-~LIISTPN 834 (952)
.||+|++. ..+. |-+. +....+.+.+.++|+|| .+++.+.+
T Consensus 201 ~fDlIvsNPPyi~~~~~~~l~~~~~~eP~~AL~gg~dGl~~~~~i~~~a~~~L~pgG~l~~E~g~ 265 (307)
T PRK11805 201 RYDLIVSNPPYVDAEDMADLPAEYRHEPELALAAGDDGLDLVRRILAEAPDYLTEDGVLVVEVGN 265 (307)
T ss_pred CccEEEECCCCCCccchhhcCHhhccCccceeeCCCchHHHHHHHHHHHHHhcCCCCEEEEEECc
Confidence 79999985 1111 2110 12245566788999999 66666554
No 106
>smart00650 rADc Ribosomal RNA adenine dimethylases.
Probab=98.74 E-value=6.9e-08 Score=96.52 Aligned_cols=87 Identities=14% Similarity=0.170 Sum_probs=70.7
Q ss_pred HHHHHhhcCCCCEEEEEcCccchHHHHHhcCCCCCceEEEEeCChHHHHHHHHHHhhhhhcccccCCCCCCCccEEEEEc
Q 002218 704 YALQHIKESCATTLVDFGCGSGSLLDSLLDYPTALEKIVGVDISQKSLSRAAKIIHSKLSKKLDAAVPCTDVKSAVLFDG 783 (952)
Q Consensus 704 fVldlL~~~k~krVLDIGCGeG~ll~~LAr~g~~~~qVVGVDISeemLe~ArkrLsa~la~~~~~l~Pr~~~~nVtf~qG 783 (952)
.+++.+...++.+|||||||+|.++..+++.+ .+|+|+|+++.+++.+++++. ...+++++++
T Consensus 4 ~i~~~~~~~~~~~vLEiG~G~G~lt~~l~~~~---~~v~~vE~~~~~~~~~~~~~~--------------~~~~v~ii~~ 66 (169)
T smart00650 4 KIVRAANLRPGDTVLEIGPGKGALTEELLERA---ARVTAIEIDPRLAPRLREKFA--------------AADNLTVIHG 66 (169)
T ss_pred HHHHhcCCCCcCEEEEECCCccHHHHHHHhcC---CeEEEEECCHHHHHHHHHHhc--------------cCCCEEEEEC
Confidence 45566666677899999999999999999886 799999999999999987653 1247999999
Q ss_pred CccccCCCCCCccEEEEccccccCC
Q 002218 784 SITVFDSRLHGFDIGTCLEVIEHME 808 (952)
Q Consensus 784 Da~dLpf~d~sFDVVVcieVIEHL~ 808 (952)
|+.++++.+..||.|++.- -.|+.
T Consensus 67 D~~~~~~~~~~~d~vi~n~-Py~~~ 90 (169)
T smart00650 67 DALKFDLPKLQPYKVVGNL-PYNIS 90 (169)
T ss_pred chhcCCccccCCCEEEECC-CcccH
Confidence 9999887776799998853 34554
No 107
>PRK14904 16S rRNA methyltransferase B; Provisional
Probab=98.72 E-value=7.4e-08 Score=110.71 Aligned_cols=118 Identities=14% Similarity=0.140 Sum_probs=85.6
Q ss_pred HHHHHhhcCCCCEEEEEcCccchHHHHHhcCCCCCceEEEEeCChHHHHHHHHHHhhhhhcccccCCCCCCCccEEEEEc
Q 002218 704 YALQHIKESCATTLVDFGCGSGSLLDSLLDYPTALEKIVGVDISQKSLSRAAKIIHSKLSKKLDAAVPCTDVKSAVLFDG 783 (952)
Q Consensus 704 fVldlL~~~k~krVLDIGCGeG~ll~~LAr~g~~~~qVVGVDISeemLe~ArkrLsa~la~~~~~l~Pr~~~~nVtf~qG 783 (952)
.+...+...++.+|||+|||+|..+..+++..+...+|+|+|+++.+++.++++++. .+..+|++.++
T Consensus 241 l~~~~l~~~~g~~VLDlgaG~G~kt~~la~~~~~~~~V~avD~s~~~l~~~~~~~~~------------~g~~~v~~~~~ 308 (445)
T PRK14904 241 LACLLLNPQPGSTVLDLCAAPGGKSTFMAELMQNRGQITAVDRYPQKLEKIRSHASA------------LGITIIETIEG 308 (445)
T ss_pred HHHHhcCCCCCCEEEEECCCCCHHHHHHHHHhCCCcEEEEEECCHHHHHHHHHHHHH------------hCCCeEEEEeC
Confidence 344555666778999999999999888876432236899999999999999988753 24457999999
Q ss_pred CccccCCCCCCccEEEE----c--ccc---------------ccCChhHHHHHHHHHHHccCCC-EEEEEecCC
Q 002218 784 SITVFDSRLHGFDIGTC----L--EVI---------------EHMEEDEASQFGNIVLSSFRPR-ILIVSTPNY 835 (952)
Q Consensus 784 Da~dLpf~d~sFDVVVc----i--eVI---------------EHL~dD~l~~L~eeI~RvLKPG-~LIISTPN~ 835 (952)
|+..++ ....||+|++ + .++ +++...+ ..+...+.++|||| .++++|...
T Consensus 309 Da~~~~-~~~~fD~Vl~D~Pcsg~g~~~r~p~~~~~~~~~~~~~l~~~q-~~iL~~a~~~lkpgG~lvystcs~ 380 (445)
T PRK14904 309 DARSFS-PEEQPDAILLDAPCTGTGVLGRRAELRWKLTPEKLAELVGLQ-AELLDHAASLLKPGGVLVYATCSI 380 (445)
T ss_pred cccccc-cCCCCCEEEEcCCCCCcchhhcCcchhhcCCHHHHHHHHHHH-HHHHHHHHHhcCCCcEEEEEeCCC
Confidence 998775 4568999995 1 222 2222222 34556799999999 888877653
No 108
>TIGR00446 nop2p NOL1/NOP2/sun family putative RNA methylase.
Probab=98.69 E-value=8.5e-08 Score=103.08 Aligned_cols=116 Identities=15% Similarity=0.147 Sum_probs=84.7
Q ss_pred HHhhcCCCCEEEEEcCccchHHHHHhcCCCCCceEEEEeCChHHHHHHHHHHhhhhhcccccCCCCCCCccEEEEEcCcc
Q 002218 707 QHIKESCATTLVDFGCGSGSLLDSLLDYPTALEKIVGVDISQKSLSRAAKIIHSKLSKKLDAAVPCTDVKSAVLFDGSIT 786 (952)
Q Consensus 707 dlL~~~k~krVLDIGCGeG~ll~~LAr~g~~~~qVVGVDISeemLe~ArkrLsa~la~~~~~l~Pr~~~~nVtf~qGDa~ 786 (952)
..+...++.+|||+|||.|..+..+++..+....|+++|+++.+++.+++++.. .+..++.+.++|+.
T Consensus 65 ~~l~~~~g~~VLDl~ag~G~kt~~la~~~~~~g~v~a~D~~~~~l~~~~~n~~~------------~g~~~v~~~~~D~~ 132 (264)
T TIGR00446 65 LALEPDPPERVLDMAAAPGGKTTQISALMKNEGAIVANEFSKSRTKVLIANINR------------CGVLNVAVTNFDGR 132 (264)
T ss_pred HHhCCCCcCEEEEECCCchHHHHHHHHHcCCCCEEEEEcCCHHHHHHHHHHHHH------------cCCCcEEEecCCHH
Confidence 345556778999999999999998877542235899999999999999988753 24457999999988
Q ss_pred ccCCCCCCccEEEE------ccccccCCh--------------hHHHHHHHHHHHccCCC-EEEEEecC
Q 002218 787 VFDSRLHGFDIGTC------LEVIEHMEE--------------DEASQFGNIVLSSFRPR-ILIVSTPN 834 (952)
Q Consensus 787 dLpf~d~sFDVVVc------ieVIEHL~d--------------D~l~~L~eeI~RvLKPG-~LIISTPN 834 (952)
.++.....||+|++ .+++.+-++ .....+.+.+.++|||| .++.+|-.
T Consensus 133 ~~~~~~~~fD~Vl~D~Pcsg~G~~~~~p~~~~~~~~~~~~~l~~~q~~iL~~a~~~lkpgG~lvYstcs 201 (264)
T TIGR00446 133 VFGAAVPKFDAILLDAPCSGEGVIRKDPSRKKNWSEEDIQEISALQKELIDSAFDALKPGGVLVYSTCS 201 (264)
T ss_pred HhhhhccCCCEEEEcCCCCCCcccccChhhhhcCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEeCC
Confidence 77655567999986 223332221 11234556799999998 77777654
No 109
>PRK14901 16S rRNA methyltransferase B; Provisional
Probab=98.69 E-value=1.4e-07 Score=108.16 Aligned_cols=120 Identities=13% Similarity=0.119 Sum_probs=90.1
Q ss_pred HHHHHHhhcCCCCEEEEEcCccchHHHHHhcCCCCCceEEEEeCChHHHHHHHHHHhhhhhcccccCCCCCCCccEEEEE
Q 002218 703 EYALQHIKESCATTLVDFGCGSGSLLDSLLDYPTALEKIVGVDISQKSLSRAAKIIHSKLSKKLDAAVPCTDVKSAVLFD 782 (952)
Q Consensus 703 efVldlL~~~k~krVLDIGCGeG~ll~~LAr~g~~~~qVVGVDISeemLe~ArkrLsa~la~~~~~l~Pr~~~~nVtf~q 782 (952)
..+...+...++.+|||+|||.|..+..+++..+...+|+++|+++.+++.+++++.. .+..+|++.+
T Consensus 242 ~l~~~~l~~~~g~~VLDl~ag~G~kt~~la~~~~~~g~v~a~D~~~~rl~~~~~n~~r------------~g~~~v~~~~ 309 (434)
T PRK14901 242 QLVAPLLDPQPGEVILDACAAPGGKTTHIAELMGDQGEIWAVDRSASRLKKLQENAQR------------LGLKSIKILA 309 (434)
T ss_pred HHHHHHhCCCCcCEEEEeCCCCchhHHHHHHHhCCCceEEEEcCCHHHHHHHHHHHHH------------cCCCeEEEEe
Confidence 3455566666789999999999999998887642336899999999999999988752 3445799999
Q ss_pred cCccccC----CCCCCccEEEE------ccccccCChh-------H-------HHHHHHHHHHccCCC-EEEEEecC
Q 002218 783 GSITVFD----SRLHGFDIGTC------LEVIEHMEED-------E-------ASQFGNIVLSSFRPR-ILIVSTPN 834 (952)
Q Consensus 783 GDa~dLp----f~d~sFDVVVc------ieVIEHL~dD-------~-------l~~L~eeI~RvLKPG-~LIISTPN 834 (952)
+|+.+++ ...+.||.|++ .+++.|-++. . +..+.+++.++|||| .++.+|..
T Consensus 310 ~D~~~~~~~~~~~~~~fD~Vl~DaPCSg~G~~~r~p~~~~~~~~~~~~~l~~~Q~~iL~~a~~~lkpgG~lvystcs 386 (434)
T PRK14901 310 ADSRNLLELKPQWRGYFDRILLDAPCSGLGTLHRHPDARWRQTPEKIQELAPLQAELLESLAPLLKPGGTLVYATCT 386 (434)
T ss_pred CChhhcccccccccccCCEEEEeCCCCcccccccCcchhhhCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEeCC
Confidence 9998875 33568999996 2466555421 1 245566799999998 77777653
No 110
>COG2242 CobL Precorrin-6B methylase 2 [Coenzyme metabolism]
Probab=98.68 E-value=2.5e-07 Score=95.64 Aligned_cols=116 Identities=13% Similarity=0.140 Sum_probs=92.5
Q ss_pred HHHHHHHHHHhhcCCCCEEEEEcCccchHHHHHhcCCCCCceEEEEeCChHHHHHHHHHHhhhhhcccccCCCCCCCccE
Q 002218 699 KQRVEYALQHIKESCATTLVDFGCGSGSLLDSLLDYPTALEKIVGVDISQKSLSRAAKIIHSKLSKKLDAAVPCTDVKSA 778 (952)
Q Consensus 699 ~QR~efVldlL~~~k~krVLDIGCGeG~ll~~LAr~g~~~~qVVGVDISeemLe~ArkrLsa~la~~~~~l~Pr~~~~nV 778 (952)
+.-+...+..|...++.+++|||||+|..+..++..+ +..+|++||-++++++..+++..+ -+.+++
T Consensus 20 ~EIRal~ls~L~~~~g~~l~DIGaGtGsi~iE~a~~~-p~~~v~AIe~~~~a~~~~~~N~~~------------fg~~n~ 86 (187)
T COG2242 20 EEIRALTLSKLRPRPGDRLWDIGAGTGSITIEWALAG-PSGRVIAIERDEEALELIERNAAR------------FGVDNL 86 (187)
T ss_pred HHHHHHHHHhhCCCCCCEEEEeCCCccHHHHHHHHhC-CCceEEEEecCHHHHHHHHHHHHH------------hCCCcE
Confidence 3344456777888899999999999999999999655 679999999999999999887653 247799
Q ss_pred EEEEcCccccCCCCCCccEEEEccccccCChhHHHHHHHHHHHccCCC-EEEEEec
Q 002218 779 VLFDGSITVFDSRLHGFDIGTCLEVIEHMEEDEASQFGNIVLSSFRPR-ILIVSTP 833 (952)
Q Consensus 779 tf~qGDa~dLpf~d~sFDVVVcieVIEHL~dD~l~~L~eeI~RvLKPG-~LIISTP 833 (952)
+++.|++.+.-.....||+|+.... ..++ .+.+.+...|||| .+++..-
T Consensus 87 ~vv~g~Ap~~L~~~~~~daiFIGGg-~~i~-----~ile~~~~~l~~ggrlV~nai 136 (187)
T COG2242 87 EVVEGDAPEALPDLPSPDAIFIGGG-GNIE-----EILEAAWERLKPGGRLVANAI 136 (187)
T ss_pred EEEeccchHhhcCCCCCCEEEECCC-CCHH-----HHHHHHHHHcCcCCeEEEEee
Confidence 9999999875444448999999888 5554 4556788899999 6666443
No 111
>PRK14903 16S rRNA methyltransferase B; Provisional
Probab=98.65 E-value=2.1e-07 Score=106.93 Aligned_cols=119 Identities=14% Similarity=0.090 Sum_probs=87.1
Q ss_pred HHHHHhhcCCCCEEEEEcCccchHHHHHhcCCCCCceEEEEeCChHHHHHHHHHHhhhhhcccccCCCCCCCccEEEEEc
Q 002218 704 YALQHIKESCATTLVDFGCGSGSLLDSLLDYPTALEKIVGVDISQKSLSRAAKIIHSKLSKKLDAAVPCTDVKSAVLFDG 783 (952)
Q Consensus 704 fVldlL~~~k~krVLDIGCGeG~ll~~LAr~g~~~~qVVGVDISeemLe~ArkrLsa~la~~~~~l~Pr~~~~nVtf~qG 783 (952)
.+...+...++.+|||+|||+|..+..+++..+...+|+++|+++.+++.+++++.. .+..++++.++
T Consensus 228 ~~~~~l~~~~g~~VLD~cagpGgkt~~la~~~~~~g~V~a~Dis~~rl~~~~~n~~r------------~g~~~v~~~~~ 295 (431)
T PRK14903 228 IVPLLMELEPGLRVLDTCAAPGGKTTAIAELMKDQGKILAVDISREKIQLVEKHAKR------------LKLSSIEIKIA 295 (431)
T ss_pred HHHHHhCCCCCCEEEEeCCCccHHHHHHHHHcCCCCEEEEEECCHHHHHHHHHHHHH------------cCCCeEEEEEC
Confidence 444556666788999999999999988887532337999999999999999988753 24457899999
Q ss_pred CccccC-CCCCCccEEEE------ccccccCC-------hh-------HHHHHHHHHHHccCCC-EEEEEecC
Q 002218 784 SITVFD-SRLHGFDIGTC------LEVIEHME-------ED-------EASQFGNIVLSSFRPR-ILIVSTPN 834 (952)
Q Consensus 784 Da~dLp-f~d~sFDVVVc------ieVIEHL~-------dD-------~l~~L~eeI~RvLKPG-~LIISTPN 834 (952)
|+..++ ...+.||.|++ .+++.+-+ .+ ....+.+.+.++|||| .++.+|..
T Consensus 296 Da~~l~~~~~~~fD~Vl~DaPCsg~G~~~~~p~~~~~~~~~~~~~l~~~Q~~iL~~a~~~LkpGG~LvYsTCs 368 (431)
T PRK14903 296 DAERLTEYVQDTFDRILVDAPCTSLGTARNHPEVLRRVNKEDFKKLSEIQLRIVSQAWKLLEKGGILLYSTCT 368 (431)
T ss_pred chhhhhhhhhccCCEEEECCCCCCCccccCChHHHHhCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEECC
Confidence 998775 34568999986 33343222 11 1234456789999998 77777764
No 112
>TIGR03704 PrmC_rel_meth putative protein-(glutamine-N5) methyltransferase, unknown substrate-specific. This protein family is closely related to two different families of protein-(glutamine-N5) methyltransferase. The first is PrmB, which modifies ribosomal protein L3 in some bacteria. The second is PrmC (HemK), which modifies peptide chain release factors 1 and 2 in most bacteria and also in eukaryotes. The glutamine side chain-binding motif NPPY shared by PrmB and PrmC is N[VAT]PY in this family. The protein substrate is unknown.
Probab=98.63 E-value=5.5e-07 Score=96.48 Aligned_cols=130 Identities=16% Similarity=0.145 Sum_probs=85.8
Q ss_pred hHHHHHHHHHHHhhcC-CCCEEEEEcCccchHHHHHhcCCCCCceEEEEeCChHHHHHHHHHHhhhhhcccccCCCCCCC
Q 002218 697 LSKQRVEYALQHIKES-CATTLVDFGCGSGSLLDSLLDYPTALEKIVGVDISQKSLSRAAKIIHSKLSKKLDAAVPCTDV 775 (952)
Q Consensus 697 L~~QR~efVldlL~~~-k~krVLDIGCGeG~ll~~LAr~g~~~~qVVGVDISeemLe~ArkrLsa~la~~~~~l~Pr~~~ 775 (952)
.....++.+...+... ...+|||+|||+|.++..+++.. +..+|+|+|+|+.+++.|++++.. .
T Consensus 69 ~Te~Lv~~~l~~~~~~~~~~~vLDlg~GsG~i~l~la~~~-~~~~v~~vDis~~al~~A~~N~~~------------~-- 133 (251)
T TIGR03704 69 RTEFLVDEAAALARPRSGTLVVVDLCCGSGAVGAALAAAL-DGIELHAADIDPAAVRCARRNLAD------------A-- 133 (251)
T ss_pred cHHHHHHHHHHhhcccCCCCEEEEecCchHHHHHHHHHhC-CCCEEEEEECCHHHHHHHHHHHHH------------c--
Confidence 3444555555554422 34589999999999999988654 236899999999999999987642 1
Q ss_pred ccEEEEEcCccccCC--CCCCccEEEEcc------ccccCChh------------------HHHHHHHHHHHccCCC-EE
Q 002218 776 KSAVLFDGSITVFDS--RLHGFDIGTCLE------VIEHMEED------------------EASQFGNIVLSSFRPR-IL 828 (952)
Q Consensus 776 ~nVtf~qGDa~dLpf--~d~sFDVVVcie------VIEHL~dD------------------~l~~L~eeI~RvLKPG-~L 828 (952)
.++++++|+.+... ....||+|++.= .+..++++ ....+.+.+.++|+|| .+
T Consensus 134 -~~~~~~~D~~~~l~~~~~~~fDlVv~NPPy~~~~~~~~~~~e~~~~ep~~al~gg~dgl~~~~~i~~~a~~~L~~gG~l 212 (251)
T TIGR03704 134 -GGTVHEGDLYDALPTALRGRVDILAANAPYVPTDAIALMPPEARDHEPRVALDGGADGLDVLRRVAAGAPDWLAPGGHL 212 (251)
T ss_pred -CCEEEEeechhhcchhcCCCEeEEEECCCCCCchhhhcCCHHHHhCCCHHHhcCCCcHHHHHHHHHHHHHHhcCCCCEE
Confidence 24788899865321 135799999852 22333222 1235556678999998 77
Q ss_pred EEEecCCchhHHHH
Q 002218 829 IVSTPNYEYNAILQ 842 (952)
Q Consensus 829 IISTPN~efN~lf~ 842 (952)
++.+.......+..
T Consensus 213 ~l~~~~~~~~~v~~ 226 (251)
T TIGR03704 213 LVETSERQAPLAVE 226 (251)
T ss_pred EEEECcchHHHHHH
Confidence 66665544444333
No 113
>KOG3010 consensus Methyltransferase [General function prediction only]
Probab=98.63 E-value=4.4e-08 Score=104.40 Aligned_cols=119 Identities=13% Similarity=0.129 Sum_probs=80.5
Q ss_pred hhhhhhcCCchhHHHHHHHHHHHhhcCCCC-EEEEEcCccchHHHHHhcCCCCCceEEEEeCChHHHHHHHHHHhhhhhc
Q 002218 686 DRMEQALFSPPLSKQRVEYALQHIKESCAT-TLVDFGCGSGSLLDSLLDYPTALEKIVGVDISQKSLSRAAKIIHSKLSK 764 (952)
Q Consensus 686 eRye~~~F~PPL~~QR~efVldlL~~~k~k-rVLDIGCGeG~ll~~LAr~g~~~~qVVGVDISeemLe~ArkrLsa~la~ 764 (952)
++|..+. |-|+ .+++..+....++. .++|+|||+|.-++.++.+. .+|+|+|+|++||+.|++.-...
T Consensus 10 ~~Y~~AR---P~YP--tdw~~~ia~~~~~h~~a~DvG~G~Gqa~~~iae~~---k~VIatD~s~~mL~~a~k~~~~~--- 78 (261)
T KOG3010|consen 10 ADYLNAR---PSYP--TDWFKKIASRTEGHRLAWDVGTGNGQAARGIAEHY---KEVIATDVSEAMLKVAKKHPPVT--- 78 (261)
T ss_pred HHHhhcC---CCCc--HHHHHHHHhhCCCcceEEEeccCCCcchHHHHHhh---hhheeecCCHHHHHHhhcCCCcc---
Confidence 5566555 2222 34555555544443 89999999998888888887 89999999999999997632100
Q ss_pred ccccCCCCCCCccEEEEEcCccccCCCCCCccEEEEccccccCChhHHHHHHHHHHHccCCC
Q 002218 765 KLDAAVPCTDVKSAVLFDGSITVFDSRLHGFDIGTCLEVIEHMEEDEASQFGNIVLSSFRPR 826 (952)
Q Consensus 765 ~~~~l~Pr~~~~nVtf~qGDa~dLpf~d~sFDVVVcieVIEHL~dD~l~~L~eeI~RvLKPG 826 (952)
......+....++.++.-.+++.|+|+|...+|++.. ..|.+++.|+||+.
T Consensus 79 --------y~~t~~~ms~~~~v~L~g~e~SVDlI~~Aqa~HWFdl---e~fy~~~~rvLRk~ 129 (261)
T KOG3010|consen 79 --------YCHTPSTMSSDEMVDLLGGEESVDLITAAQAVHWFDL---ERFYKEAYRVLRKD 129 (261)
T ss_pred --------cccCCccccccccccccCCCcceeeehhhhhHHhhch---HHHHHHHHHHcCCC
Confidence 0001122222233333334789999999999999983 45667899999985
No 114
>PRK14902 16S rRNA methyltransferase B; Provisional
Probab=98.61 E-value=2.4e-07 Score=106.37 Aligned_cols=119 Identities=14% Similarity=0.115 Sum_probs=86.0
Q ss_pred HHHHHhhcCCCCEEEEEcCccchHHHHHhcCCCCCceEEEEeCChHHHHHHHHHHhhhhhcccccCCCCCCCccEEEEEc
Q 002218 704 YALQHIKESCATTLVDFGCGSGSLLDSLLDYPTALEKIVGVDISQKSLSRAAKIIHSKLSKKLDAAVPCTDVKSAVLFDG 783 (952)
Q Consensus 704 fVldlL~~~k~krVLDIGCGeG~ll~~LAr~g~~~~qVVGVDISeemLe~ArkrLsa~la~~~~~l~Pr~~~~nVtf~qG 783 (952)
++...+...++.+|||+|||+|..+..+++..++..+|+|+|+++.+++.+++++.. .+..++++.++
T Consensus 241 lv~~~l~~~~g~~VLDlgaG~G~~t~~la~~~~~~~~v~avDi~~~~l~~~~~n~~~------------~g~~~v~~~~~ 308 (444)
T PRK14902 241 LVAPALDPKGGDTVLDACAAPGGKTTHIAELLKNTGKVVALDIHEHKLKLIEENAKR------------LGLTNIETKAL 308 (444)
T ss_pred HHHHHhCCCCCCEEEEeCCCCCHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHH------------cCCCeEEEEeC
Confidence 455566666778999999999999999887532347999999999999999988752 23446999999
Q ss_pred CccccCCC-CCCccEEEEc------cccccCCh-------h-------HHHHHHHHHHHccCCC-EEEEEecC
Q 002218 784 SITVFDSR-LHGFDIGTCL------EVIEHMEE-------D-------EASQFGNIVLSSFRPR-ILIVSTPN 834 (952)
Q Consensus 784 Da~dLpf~-d~sFDVVVci------eVIEHL~d-------D-------~l~~L~eeI~RvLKPG-~LIISTPN 834 (952)
|+.++... .+.||+|++- +++.|-++ . ....+.+.+.++|||| .++.+|..
T Consensus 309 D~~~~~~~~~~~fD~Vl~D~Pcsg~G~~~~~p~~~~~~~~~~~~~l~~~q~~iL~~a~~~LkpGG~lvystcs 381 (444)
T PRK14902 309 DARKVHEKFAEKFDKILVDAPCSGLGVIRRKPDIKYNKTKEDIESLQEIQLEILESVAQYLKKGGILVYSTCT 381 (444)
T ss_pred CcccccchhcccCCEEEEcCCCCCCeeeccCcchhhcCCHHHHHHHHHHHHHHHHHHHHHcCCCCEEEEEcCC
Confidence 99876421 2689999963 23332221 1 1234566799999999 77776654
No 115
>PRK03522 rumB 23S rRNA methyluridine methyltransferase; Reviewed
Probab=98.60 E-value=3.6e-07 Score=100.53 Aligned_cols=88 Identities=16% Similarity=0.128 Sum_probs=69.4
Q ss_pred HHHHHHHHHHhhcCCCCEEEEEcCccchHHHHHhcCCCCCceEEEEeCChHHHHHHHHHHhhhhhcccccCCCCCCCccE
Q 002218 699 KQRVEYALQHIKESCATTLVDFGCGSGSLLDSLLDYPTALEKIVGVDISQKSLSRAAKIIHSKLSKKLDAAVPCTDVKSA 778 (952)
Q Consensus 699 ~QR~efVldlL~~~k~krVLDIGCGeG~ll~~LAr~g~~~~qVVGVDISeemLe~ArkrLsa~la~~~~~l~Pr~~~~nV 778 (952)
...++.+.+.+...++.+|||+|||+|.++..+++.+ .+|+|+|+++.+++.|++++.. .+..++
T Consensus 159 ~~l~~~v~~~l~~~~~~~VLDl~cG~G~~sl~la~~~---~~V~gvD~s~~av~~A~~n~~~------------~~l~~v 223 (315)
T PRK03522 159 AQLYATARDWVRELPPRSMWDLFCGVGGFGLHCATPG---MQLTGIEISAEAIACAKQSAAE------------LGLTNV 223 (315)
T ss_pred HHHHHHHHHHHHhcCCCEEEEccCCCCHHHHHHHhcC---CEEEEEeCCHHHHHHHHHHHHH------------cCCCce
Confidence 3444555566655567899999999999999999976 7999999999999999887642 234579
Q ss_pred EEEEcCccccCC-CCCCccEEEEc
Q 002218 779 VLFDGSITVFDS-RLHGFDIGTCL 801 (952)
Q Consensus 779 tf~qGDa~dLpf-~d~sFDVVVci 801 (952)
+++++|+.++.. ....||+|++.
T Consensus 224 ~~~~~D~~~~~~~~~~~~D~Vv~d 247 (315)
T PRK03522 224 QFQALDSTQFATAQGEVPDLVLVN 247 (315)
T ss_pred EEEEcCHHHHHHhcCCCCeEEEEC
Confidence 999999987643 23579999875
No 116
>PHA03411 putative methyltransferase; Provisional
Probab=98.60 E-value=5.2e-07 Score=98.51 Aligned_cols=97 Identities=20% Similarity=0.308 Sum_probs=71.9
Q ss_pred hhcCCchhHHHHHHHHHHHhhcCCCCEEEEEcCccchHHHHHhcCCCCCceEEEEeCChHHHHHHHHHHhhhhhcccccC
Q 002218 690 QALFSPPLSKQRVEYALQHIKESCATTLVDFGCGSGSLLDSLLDYPTALEKIVGVDISQKSLSRAAKIIHSKLSKKLDAA 769 (952)
Q Consensus 690 ~~~F~PPL~~QR~efVldlL~~~k~krVLDIGCGeG~ll~~LAr~g~~~~qVVGVDISeemLe~ArkrLsa~la~~~~~l 769 (952)
..+|.|.-.-.. ++. ......+|||+|||+|.++..+++.. ...+|+|+|+++.|++.|++++
T Consensus 46 G~FfTP~~i~~~--f~~---~~~~~grVLDLGcGsGilsl~la~r~-~~~~V~gVDisp~al~~Ar~n~----------- 108 (279)
T PHA03411 46 GAFFTPEGLAWD--FTI---DAHCTGKVLDLCAGIGRLSFCMLHRC-KPEKIVCVELNPEFARIGKRLL----------- 108 (279)
T ss_pred eeEcCCHHHHHH--HHh---ccccCCeEEEcCCCCCHHHHHHHHhC-CCCEEEEEECCHHHHHHHHHhC-----------
Confidence 456777655322 232 23345799999999999988887653 1268999999999999997642
Q ss_pred CCCCCCccEEEEEcCccccCCCCCCccEEEEccccccCChh
Q 002218 770 VPCTDVKSAVLFDGSITVFDSRLHGFDIGTCLEVIEHMEED 810 (952)
Q Consensus 770 ~Pr~~~~nVtf~qGDa~dLpf~d~sFDVVVcieVIEHL~dD 810 (952)
++++++++|+.++.. ...||+|++.--+.|++..
T Consensus 109 ------~~v~~v~~D~~e~~~-~~kFDlIIsNPPF~~l~~~ 142 (279)
T PHA03411 109 ------PEAEWITSDVFEFES-NEKFDVVISNPPFGKINTT 142 (279)
T ss_pred ------cCCEEEECchhhhcc-cCCCcEEEEcCCccccCch
Confidence 267899999988753 4689999998888887643
No 117
>TIGR00563 rsmB ribosomal RNA small subunit methyltransferase RsmB. The seed alignment is built from bacterial sequences only. Eukaryotic homologs include Nop2, a protein required for processing pre-rRNA, that is likely also a rRNA methyltransferase, although the fine specificity may differ. Cutoff scores are set to avoid treating archaeal and eukaroytic homologs automatically as functionally equivalent, although they may have very similar roles.
Probab=98.60 E-value=3.9e-07 Score=104.24 Aligned_cols=120 Identities=16% Similarity=0.168 Sum_probs=88.3
Q ss_pred HHHHHHhhcCCCCEEEEEcCccchHHHHHhcCCCCCceEEEEeCChHHHHHHHHHHhhhhhcccccCCCCCCC-ccEEEE
Q 002218 703 EYALQHIKESCATTLVDFGCGSGSLLDSLLDYPTALEKIVGVDISQKSLSRAAKIIHSKLSKKLDAAVPCTDV-KSAVLF 781 (952)
Q Consensus 703 efVldlL~~~k~krVLDIGCGeG~ll~~LAr~g~~~~qVVGVDISeemLe~ArkrLsa~la~~~~~l~Pr~~~-~nVtf~ 781 (952)
.++...+...++.+|||+|||+|..+..+++..+ ..+|+|+|+++.+++.+++++... +. ..+.+.
T Consensus 228 ~~~~~~L~~~~g~~VLDlcag~G~kt~~la~~~~-~~~v~a~D~~~~~l~~~~~n~~r~------------g~~~~v~~~ 294 (426)
T TIGR00563 228 QWVATWLAPQNEETILDACAAPGGKTTHILELAP-QAQVVALDIHEHRLKRVYENLKRL------------GLTIKAETK 294 (426)
T ss_pred HHHHHHhCCCCCCeEEEeCCCccHHHHHHHHHcC-CCeEEEEeCCHHHHHHHHHHHHHc------------CCCeEEEEe
Confidence 3566667777889999999999999999887642 479999999999999999887531 22 235557
Q ss_pred EcCccccCC--CCCCccEEEE------ccccccCChh--------------HHHHHHHHHHHccCCC-EEEEEecCC
Q 002218 782 DGSITVFDS--RLHGFDIGTC------LEVIEHMEED--------------EASQFGNIVLSSFRPR-ILIVSTPNY 835 (952)
Q Consensus 782 qGDa~dLpf--~d~sFDVVVc------ieVIEHL~dD--------------~l~~L~eeI~RvLKPG-~LIISTPN~ 835 (952)
.+|....+. ....||.|++ .+++.+.++- .+..+.+++.++|||| .++++|...
T Consensus 295 ~~d~~~~~~~~~~~~fD~VllDaPcSg~G~~~~~p~~~~~~~~~~~~~l~~lQ~~lL~~a~~~LkpgG~lvystcs~ 371 (426)
T TIGR00563 295 DGDGRGPSQWAENEQFDRILLDAPCSATGVIRRHPDIKWLRKPRDIAELAELQSEILDAIWPLLKTGGTLVYATCSV 371 (426)
T ss_pred ccccccccccccccccCEEEEcCCCCCCcccccCcchhhcCCHHHHHHHHHHHHHHHHHHHHhcCCCcEEEEEeCCC
Confidence 778765543 4568999985 3567665531 1245556799999999 888887653
No 118
>PRK00811 spermidine synthase; Provisional
Probab=98.60 E-value=3.4e-07 Score=99.69 Aligned_cols=110 Identities=18% Similarity=0.197 Sum_probs=78.3
Q ss_pred CCCEEEEEcCccchHHHHHhcCCCCCceEEEEeCChHHHHHHHHHHhhhhhcccccCCCCCCCccEEEEEcCccccCC-C
Q 002218 713 CATTLVDFGCGSGSLLDSLLDYPTALEKIVGVDISQKSLSRAAKIIHSKLSKKLDAAVPCTDVKSAVLFDGSITVFDS-R 791 (952)
Q Consensus 713 k~krVLDIGCGeG~ll~~LAr~g~~~~qVVGVDISeemLe~ArkrLsa~la~~~~~l~Pr~~~~nVtf~qGDa~dLpf-~ 791 (952)
.+++|||||||.|..++.++++. ...+|++||+++++++.|++.+...... ....++++++.+|+..+-. .
T Consensus 76 ~p~~VL~iG~G~G~~~~~~l~~~-~~~~V~~VEid~~vv~~a~~~~~~~~~~-------~~~d~rv~v~~~Da~~~l~~~ 147 (283)
T PRK00811 76 NPKRVLIIGGGDGGTLREVLKHP-SVEKITLVEIDERVVEVCRKYLPEIAGG-------AYDDPRVELVIGDGIKFVAET 147 (283)
T ss_pred CCCEEEEEecCchHHHHHHHcCC-CCCEEEEEeCCHHHHHHHHHHhHHhccc-------cccCCceEEEECchHHHHhhC
Confidence 57899999999999999998874 3479999999999999999876421100 0124589999999976432 3
Q ss_pred CCCccEEEEccccccCChhH--HHHHHHHHHHccCCCEEEE
Q 002218 792 LHGFDIGTCLEVIEHMEEDE--ASQFGNIVLSSFRPRILIV 830 (952)
Q Consensus 792 d~sFDVVVcieVIEHL~dD~--l~~L~eeI~RvLKPG~LII 830 (952)
.+.||+|++-..-.+.+... ...|.+.+.+.|+||.+++
T Consensus 148 ~~~yDvIi~D~~dp~~~~~~l~t~ef~~~~~~~L~~gGvlv 188 (283)
T PRK00811 148 ENSFDVIIVDSTDPVGPAEGLFTKEFYENCKRALKEDGIFV 188 (283)
T ss_pred CCcccEEEECCCCCCCchhhhhHHHHHHHHHHhcCCCcEEE
Confidence 56899999853322222111 1455667999999994444
No 119
>PRK10901 16S rRNA methyltransferase B; Provisional
Probab=98.59 E-value=4.7e-07 Score=103.68 Aligned_cols=116 Identities=16% Similarity=0.200 Sum_probs=84.3
Q ss_pred HHHHHhhcCCCCEEEEEcCccchHHHHHhcCCCCCceEEEEeCChHHHHHHHHHHhhhhhcccccCCCCCCCccEEEEEc
Q 002218 704 YALQHIKESCATTLVDFGCGSGSLLDSLLDYPTALEKIVGVDISQKSLSRAAKIIHSKLSKKLDAAVPCTDVKSAVLFDG 783 (952)
Q Consensus 704 fVldlL~~~k~krVLDIGCGeG~ll~~LAr~g~~~~qVVGVDISeemLe~ArkrLsa~la~~~~~l~Pr~~~~nVtf~qG 783 (952)
.+...+...++.+|||+|||+|..+..+++..+ ..+|+|+|+++.+++.+++++.. .+. ++++.++
T Consensus 235 ~~~~~l~~~~g~~VLDlgaG~G~~t~~la~~~~-~~~v~a~D~s~~~l~~~~~n~~~------------~g~-~~~~~~~ 300 (427)
T PRK10901 235 LAATLLAPQNGERVLDACAAPGGKTAHILELAP-QAQVVALDIDAQRLERVRENLQR------------LGL-KATVIVG 300 (427)
T ss_pred HHHHHcCCCCCCEEEEeCCCCChHHHHHHHHcC-CCEEEEEeCCHHHHHHHHHHHHH------------cCC-CeEEEEc
Confidence 455566666788999999999999999988762 26899999999999999987652 122 4789999
Q ss_pred CccccCC--CCCCccEEEE----cc--ccccCC-------hh-------HHHHHHHHHHHccCCC-EEEEEec
Q 002218 784 SITVFDS--RLHGFDIGTC----LE--VIEHME-------ED-------EASQFGNIVLSSFRPR-ILIVSTP 833 (952)
Q Consensus 784 Da~dLpf--~d~sFDVVVc----ie--VIEHL~-------dD-------~l~~L~eeI~RvLKPG-~LIISTP 833 (952)
|+.+++. ...+||.|++ +. ++.+-+ ++ ....+.+.+.++|||| .++++|.
T Consensus 301 D~~~~~~~~~~~~fD~Vl~D~Pcs~~G~~~~~p~~~~~~~~~~l~~l~~~q~~iL~~a~~~LkpGG~lvystc 373 (427)
T PRK10901 301 DARDPAQWWDGQPFDRILLDAPCSATGVIRRHPDIKWLRRPEDIAALAALQSEILDALWPLLKPGGTLLYATC 373 (427)
T ss_pred CcccchhhcccCCCCEEEECCCCCcccccccCccccccCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEeC
Confidence 9987642 3567999993 32 222211 11 1234566799999999 7777775
No 120
>PLN02781 Probable caffeoyl-CoA O-methyltransferase
Probab=98.59 E-value=8.4e-07 Score=94.18 Aligned_cols=164 Identities=13% Similarity=0.050 Sum_probs=103.0
Q ss_pred HHHHHHHhhcCCCCEEEEEcCccchHHHHHhcCCCCCceEEEEeCChHHHHHHHHHHhhhhhcccccCCCCCCCccEEEE
Q 002218 702 VEYALQHIKESCATTLVDFGCGSGSLLDSLLDYPTALEKIVGVDISQKSLSRAAKIIHSKLSKKLDAAVPCTDVKSAVLF 781 (952)
Q Consensus 702 ~efVldlL~~~k~krVLDIGCGeG~ll~~LAr~g~~~~qVVGVDISeemLe~ArkrLsa~la~~~~~l~Pr~~~~nVtf~ 781 (952)
-+++..+++..++++|||+|||+|+-+..|++..++..+|+++|+++++++.|++++... +...+++++
T Consensus 57 g~~L~~l~~~~~~~~vLEiGt~~G~s~l~la~~~~~~g~v~tiD~d~~~~~~A~~n~~~~-----------gl~~~i~~~ 125 (234)
T PLN02781 57 GLFLSMLVKIMNAKNTLEIGVFTGYSLLTTALALPEDGRITAIDIDKEAYEVGLEFIKKA-----------GVDHKINFI 125 (234)
T ss_pred HHHHHHHHHHhCCCEEEEecCcccHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHc-----------CCCCcEEEE
Confidence 345555556668899999999999988877765333479999999999999999887532 122479999
Q ss_pred EcCccccCC------CCCCccEEEEccccccCChhHHHHHHHHHHHccCCCEEEEEecCCchhHHHHhhccCccCCCCcc
Q 002218 782 DGSITVFDS------RLHGFDIGTCLEVIEHMEEDEASQFGNIVLSSFRPRILIVSTPNYEYNAILQKSSSTIQEDDPDE 855 (952)
Q Consensus 782 qGDa~dLpf------~d~sFDVVVcieVIEHL~dD~l~~L~eeI~RvLKPG~LIISTPN~efN~lf~~L~~~ta~eYPde 855 (952)
.||+.+.-. ....||+|+.- +-. +....+.+.+.+.|+||.+++.. | .+|..... .
T Consensus 126 ~gda~~~L~~l~~~~~~~~fD~VfiD----a~k-~~y~~~~~~~~~ll~~GG~ii~d-n----~l~~G~v~--~------ 187 (234)
T PLN02781 126 QSDALSALDQLLNNDPKPEFDFAFVD----ADK-PNYVHFHEQLLKLVKVGGIIAFD-N----TLWFGFVA--Q------ 187 (234)
T ss_pred EccHHHHHHHHHhCCCCCCCCEEEEC----CCH-HHHHHHHHHHHHhcCCCeEEEEE-c----CCcCCeec--C------
Confidence 999976411 14689999763 222 33334556789999999444432 2 12211100 0
Q ss_pred hhhhccccccCCCCccccCHHHHHHHHHHHHHHcCcEEEEEeecCC
Q 002218 856 KTQLQSCKFRNHDHKFEWTRDQFNCWATELAARHNYSVEFSGVGGS 901 (952)
Q Consensus 856 ~~g~~~~~fRh~DHkFEWTReEFqsWae~La~q~GYsVefsGVG~~ 901 (952)
. .....++.. -....++++.+.+...-.|...+..+|++
T Consensus 188 -----~-~~~~~~~~~-~~~~~ir~~~~~i~~~~~~~~~~lp~gdG 226 (234)
T PLN02781 188 -----E-EDEVPEHMR-AYRKALLEFNKLLASDPRVEISQISIGDG 226 (234)
T ss_pred -----c-ccccchhhh-HHHHHHHHHHHHHhhCCCeEEEEEEeCCc
Confidence 0 000011111 11244556655666666888888888863
No 121
>KOG1975 consensus mRNA cap methyltransferase [RNA processing and modification]
Probab=98.59 E-value=2.3e-07 Score=102.37 Aligned_cols=140 Identities=19% Similarity=0.236 Sum_probs=97.5
Q ss_pred hhcCCchhHHH-HHHHHHHHhh---cCCCCEEEEEcCccchHHHHHhcCCCCCceEEEEeCChHHHHHHHHHHhhhhhcc
Q 002218 690 QALFSPPLSKQ-RVEYALQHIK---ESCATTLVDFGCGSGSLLDSLLDYPTALEKIVGVDISQKSLSRAAKIIHSKLSKK 765 (952)
Q Consensus 690 ~~~F~PPL~~Q-R~efVldlL~---~~k~krVLDIGCGeG~ll~~LAr~g~~~~qVVGVDISeemLe~ArkrLsa~la~~ 765 (952)
...++|-++.. --+||...|- ..++..++|+|||-|.-+...-+.+ +..++|+||++..|+.|++|+.......
T Consensus 90 ~Rq~S~Ii~lRnfNNwIKs~LI~~y~~~~~~~~~LgCGKGGDLlKw~kAg--I~~~igiDIAevSI~qa~~RYrdm~~r~ 167 (389)
T KOG1975|consen 90 KRQRSPIIFLRNFNNWIKSVLINLYTKRGDDVLDLGCGKGGDLLKWDKAG--IGEYIGIDIAEVSINQARKRYRDMKNRF 167 (389)
T ss_pred hhccCceeehhhhhHHHHHHHHHHHhccccccceeccCCcccHhHhhhhc--ccceEeeehhhccHHHHHHHHHHHHhhh
Confidence 33344443332 2335554432 2366789999999888776555554 4789999999999999999886432211
Q ss_pred cccCCCCCCCccEEEEEcCccc------cCCCCCCccEEEEccccccCC--hhHHHHHHHHHHHccCCC-EEEEEecCCc
Q 002218 766 LDAAVPCTDVKSAVLFDGSITV------FDSRLHGFDIGTCLEVIEHME--EDEASQFGNIVLSSFRPR-ILIVSTPNYE 836 (952)
Q Consensus 766 ~~~l~Pr~~~~nVtf~qGDa~d------Lpf~d~sFDVVVcieVIEHL~--dD~l~~L~eeI~RvLKPG-~LIISTPN~e 836 (952)
.+..-++.|+.||... +++.+..||+|.|.+++|+-- .+.+..++.++.+.|+|| ++|-|+|+++
T Consensus 168 ------~~~~f~a~f~~~Dc~~~~l~d~~e~~dp~fDivScQF~~HYaFetee~ar~~l~Nva~~LkpGG~FIgTiPdsd 241 (389)
T KOG1975|consen 168 ------KKFIFTAVFIAADCFKERLMDLLEFKDPRFDIVSCQFAFHYAFETEESARIALRNVAKCLKPGGVFIGTIPDSD 241 (389)
T ss_pred ------hcccceeEEEEeccchhHHHHhccCCCCCcceeeeeeeEeeeeccHHHHHHHHHHHHhhcCCCcEEEEecCcHH
Confidence 0123368899998753 344555699999999998753 456677778999999999 7788999865
Q ss_pred h
Q 002218 837 Y 837 (952)
Q Consensus 837 f 837 (952)
.
T Consensus 242 ~ 242 (389)
T KOG1975|consen 242 V 242 (389)
T ss_pred H
Confidence 4
No 122
>PRK13168 rumA 23S rRNA m(5)U1939 methyltransferase; Reviewed
Probab=98.56 E-value=4.8e-07 Score=103.96 Aligned_cols=115 Identities=19% Similarity=0.266 Sum_probs=81.5
Q ss_pred hHHHHHHHHHHHhhcCCCCEEEEEcCccchHHHHHhcCCCCCceEEEEeCChHHHHHHHHHHhhhhhcccccCCCCCCCc
Q 002218 697 LSKQRVEYALQHIKESCATTLVDFGCGSGSLLDSLLDYPTALEKIVGVDISQKSLSRAAKIIHSKLSKKLDAAVPCTDVK 776 (952)
Q Consensus 697 L~~QR~efVldlL~~~k~krVLDIGCGeG~ll~~LAr~g~~~~qVVGVDISeemLe~ArkrLsa~la~~~~~l~Pr~~~~ 776 (952)
.....++.+.+.+...++.+|||+|||+|.++..|++.+ .+|+|+|+|++|++.|++++.. .+..
T Consensus 281 ~~e~l~~~vl~~l~~~~~~~VLDlgcGtG~~sl~la~~~---~~V~gvD~s~~al~~A~~n~~~------------~~~~ 345 (443)
T PRK13168 281 VNQKMVARALEWLDPQPGDRVLDLFCGLGNFTLPLARQA---AEVVGVEGVEAMVERARENARR------------NGLD 345 (443)
T ss_pred HHHHHHHHHHHHhcCCCCCEEEEEeccCCHHHHHHHHhC---CEEEEEeCCHHHHHHHHHHHHH------------cCCC
Confidence 345566777777766677899999999999999999887 7999999999999999887642 2345
Q ss_pred cEEEEEcCccccC----CCCCCccEEEEccccccCChhHHHHHHHHHHHccCCC-EEEEEe
Q 002218 777 SAVLFDGSITVFD----SRLHGFDIGTCLEVIEHMEEDEASQFGNIVLSSFRPR-ILIVST 832 (952)
Q Consensus 777 nVtf~qGDa~dLp----f~d~sFDVVVcieVIEHL~dD~l~~L~eeI~RvLKPG-~LIIST 832 (952)
+++++++|+.+.. +....||+|++.=- ... .....+.+.+ ++|+ .++++.
T Consensus 346 ~v~~~~~d~~~~l~~~~~~~~~fD~Vi~dPP--r~g---~~~~~~~l~~-~~~~~ivyvSC 400 (443)
T PRK13168 346 NVTFYHANLEEDFTDQPWALGGFDKVLLDPP--RAG---AAEVMQALAK-LGPKRIVYVSC 400 (443)
T ss_pred ceEEEEeChHHhhhhhhhhcCCCCEEEECcC--CcC---hHHHHHHHHh-cCCCeEEEEEe
Confidence 7999999997532 33467999987311 001 1122233444 5777 666654
No 123
>PF06325 PrmA: Ribosomal protein L11 methyltransferase (PrmA); InterPro: IPR010456 This family consists of several Ribosomal protein L11 methyltransferase sequences. Its genetic determinant is prmA, which forms a bifunctional operon with the downstream panF gene []. The role of L11 methylation in ribosome function is, as yet, unknown. Deletion of the prmA gene in Escherichia coli showed no obvious effect [] except for the production of undermethylated forms of L11 []. Methylation is the most common post-transcriptional modification to ribosomal proteins in all organisms. PrmA is the only bacterial enzyme that catalyses the methylation of a ribosomal protein [].; GO: 0008276 protein methyltransferase activity, 0006479 protein methylation, 0005737 cytoplasm; PDB: 3GRZ_B 1F3L_A 2NXJ_B 3CJT_I 3CJQ_G 2NXE_A 2NXC_A 2ZBP_A 3EGV_A 3CJS_A ....
Probab=98.56 E-value=3.6e-07 Score=100.53 Aligned_cols=100 Identities=20% Similarity=0.213 Sum_probs=71.0
Q ss_pred CCCCEEEEEcCccchHHHHHhcCCCCCceEEEEeCChHHHHHHHHHHhhhhhcccccCCCCCCCccEEEEEcCccccCCC
Q 002218 712 SCATTLVDFGCGSGSLLDSLLDYPTALEKIVGVDISQKSLSRAAKIIHSKLSKKLDAAVPCTDVKSAVLFDGSITVFDSR 791 (952)
Q Consensus 712 ~k~krVLDIGCGeG~ll~~LAr~g~~~~qVVGVDISeemLe~ArkrLsa~la~~~~~l~Pr~~~~nVtf~qGDa~dLpf~ 791 (952)
.++++|||+|||+|.++...++.|. .+|+|+|+++.+++.|+++...+ + -..++.+. ...+. .
T Consensus 160 ~~g~~vLDvG~GSGILaiaA~klGA--~~v~a~DiDp~Av~~a~~N~~~N--~---------~~~~~~v~--~~~~~--~ 222 (295)
T PF06325_consen 160 KPGKRVLDVGCGSGILAIAAAKLGA--KKVVAIDIDPLAVEAARENAELN--G---------VEDRIEVS--LSEDL--V 222 (295)
T ss_dssp STTSEEEEES-TTSHHHHHHHHTTB--SEEEEEESSCHHHHHHHHHHHHT--T----------TTCEEES--CTSCT--C
T ss_pred cCCCEEEEeCCcHHHHHHHHHHcCC--CeEEEecCCHHHHHHHHHHHHHc--C---------CCeeEEEE--Eeccc--c
Confidence 3668999999999999999999984 68999999999999999886421 1 11234332 22222 2
Q ss_pred CCCccEEEEccccccCChhHHHHHHHHHHHccCCC-EEEEEec
Q 002218 792 LHGFDIGTCLEVIEHMEEDEASQFGNIVLSSFRPR-ILIVSTP 833 (952)
Q Consensus 792 d~sFDVVVcieVIEHL~dD~l~~L~eeI~RvLKPG-~LIISTP 833 (952)
...||+|+++-. .+.+..+...+.++|+|| .+|++-.
T Consensus 223 ~~~~dlvvANI~-----~~vL~~l~~~~~~~l~~~G~lIlSGI 260 (295)
T PF06325_consen 223 EGKFDLVVANIL-----ADVLLELAPDIASLLKPGGYLILSGI 260 (295)
T ss_dssp CS-EEEEEEES------HHHHHHHHHHCHHHEEEEEEEEEEEE
T ss_pred cccCCEEEECCC-----HHHHHHHHHHHHHhhCCCCEEEEccc
Confidence 488999998644 355556666799999998 7777654
No 124
>PTZ00146 fibrillarin; Provisional
Probab=98.56 E-value=4.3e-07 Score=99.78 Aligned_cols=103 Identities=13% Similarity=0.059 Sum_probs=75.0
Q ss_pred cCCCCEEEEEcCccchHHHHHhcCCCCCceEEEEeCChHHHHHHHHHHhhhhhcccccCCCCCCCccEEEEEcCcccc--
Q 002218 711 ESCATTLVDFGCGSGSLLDSLLDYPTALEKIVGVDISQKSLSRAAKIIHSKLSKKLDAAVPCTDVKSAVLFDGSITVF-- 788 (952)
Q Consensus 711 ~~k~krVLDIGCGeG~ll~~LAr~g~~~~qVVGVDISeemLe~ArkrLsa~la~~~~~l~Pr~~~~nVtf~qGDa~dL-- 788 (952)
..++.+|||+|||+|.++..+++..++...|++||+++.|++...+... ...+|.++.+|+...
T Consensus 130 IkpG~~VLDLGaG~G~~t~~lAdiVG~~G~VyAVD~s~r~~~dLl~~ak--------------~r~NI~~I~~Da~~p~~ 195 (293)
T PTZ00146 130 IKPGSKVLYLGAASGTTVSHVSDLVGPEGVVYAVEFSHRSGRDLTNMAK--------------KRPNIVPIIEDARYPQK 195 (293)
T ss_pred cCCCCEEEEeCCcCCHHHHHHHHHhCCCCEEEEEECcHHHHHHHHHHhh--------------hcCCCEEEECCccChhh
Confidence 4567899999999999999999875444689999999876644433221 113788899998642
Q ss_pred -CCCCCCccEEEEccccccCChhHHHHHHHHHHHccCCC-EEEEE
Q 002218 789 -DSRLHGFDIGTCLEVIEHMEEDEASQFGNIVLSSFRPR-ILIVS 831 (952)
Q Consensus 789 -pf~d~sFDVVVcieVIEHL~dD~l~~L~eeI~RvLKPG-~LIIS 831 (952)
......||+|++... .+++...+..++.++|||| .++|.
T Consensus 196 y~~~~~~vDvV~~Dva----~pdq~~il~~na~r~LKpGG~~vI~ 236 (293)
T PTZ00146 196 YRMLVPMVDVIFADVA----QPDQARIVALNAQYFLKNGGHFIIS 236 (293)
T ss_pred hhcccCCCCEEEEeCC----CcchHHHHHHHHHHhccCCCEEEEE
Confidence 123457999988653 2356566666799999999 77764
No 125
>TIGR00438 rrmJ cell division protein FtsJ.
Probab=98.55 E-value=3.1e-07 Score=93.25 Aligned_cols=99 Identities=16% Similarity=0.242 Sum_probs=69.0
Q ss_pred CCCCEEEEEcCccchHHHHHhcCCCCCceEEEEeCChHHHHHHHHHHhhhhhcccccCCCCCCCccEEEEEcCccccC--
Q 002218 712 SCATTLVDFGCGSGSLLDSLLDYPTALEKIVGVDISQKSLSRAAKIIHSKLSKKLDAAVPCTDVKSAVLFDGSITVFD-- 789 (952)
Q Consensus 712 ~k~krVLDIGCGeG~ll~~LAr~g~~~~qVVGVDISeemLe~ArkrLsa~la~~~~~l~Pr~~~~nVtf~qGDa~dLp-- 789 (952)
.++.+|||+|||+|.++..+++...+..+|+|+|+++.+ .. +++++.++|+.+.+
T Consensus 31 ~~g~~VLDiG~GtG~~~~~l~~~~~~~~~v~~vDis~~~------~~-----------------~~i~~~~~d~~~~~~~ 87 (188)
T TIGR00438 31 KPGDTVLDLGAAPGGWSQVAVEQVGGKGRVIAVDLQPMK------PI-----------------ENVDFIRGDFTDEEVL 87 (188)
T ss_pred CCCCEEEEecCCCCHHHHHHHHHhCCCceEEEEeccccc------cC-----------------CCceEEEeeCCChhHH
Confidence 567899999999999998887764334689999999854 10 25778888887643
Q ss_pred ------CCCCCccEEEEccc--------cccCCh-hHHHHHHHHHHHccCCC-EEEEEec
Q 002218 790 ------SRLHGFDIGTCLEV--------IEHMEE-DEASQFGNIVLSSFRPR-ILIVSTP 833 (952)
Q Consensus 790 ------f~d~sFDVVVcieV--------IEHL~d-D~l~~L~eeI~RvLKPG-~LIISTP 833 (952)
...++||+|++... ++|+.. +....+.+++.++|+|| .+++..+
T Consensus 88 ~~l~~~~~~~~~D~V~~~~~~~~~g~~~~~~~~~~~~~~~~l~~~~~~LkpgG~lvi~~~ 147 (188)
T TIGR00438 88 NKIRERVGDDKVDVVMSDAAPNISGYWDIDHLRSIDLVELALDIAKEVLKPKGNFVVKVF 147 (188)
T ss_pred HHHHHHhCCCCccEEEcCCCCCCCCCccccHHHHHHHHHHHHHHHHHHccCCCEEEEEEc
Confidence 24568999998543 333221 11245556799999998 6666443
No 126
>PLN02232 ubiquinone biosynthesis methyltransferase
Probab=98.54 E-value=3.4e-07 Score=91.42 Aligned_cols=81 Identities=17% Similarity=0.121 Sum_probs=63.4
Q ss_pred EEEeCChHHHHHHHHHHhhhhhcccccCCCCCCCccEEEEEcCccccCCCCCCccEEEEccccccCChhHHHHHHHHHHH
Q 002218 742 VGVDISQKSLSRAAKIIHSKLSKKLDAAVPCTDVKSAVLFDGSITVFDSRLHGFDIGTCLEVIEHMEEDEASQFGNIVLS 821 (952)
Q Consensus 742 VGVDISeemLe~ArkrLsa~la~~~~~l~Pr~~~~nVtf~qGDa~dLpf~d~sFDVVVcieVIEHL~dD~l~~L~eeI~R 821 (952)
+|+|+|++||+.|+++..... .....+++++++|+.++|+.+++||+|++..+++|++ +....+ +++.|
T Consensus 1 ~GvD~S~~ML~~A~~~~~~~~---------~~~~~~i~~~~~d~~~lp~~~~~fD~v~~~~~l~~~~-d~~~~l-~ei~r 69 (160)
T PLN02232 1 MGLDFSSEQLAVAATRQSLKA---------RSCYKCIEWIEGDAIDLPFDDCEFDAVTMGYGLRNVV-DRLRAM-KEMYR 69 (160)
T ss_pred CeEcCCHHHHHHHHHhhhccc---------ccCCCceEEEEechhhCCCCCCCeeEEEecchhhcCC-CHHHHH-HHHHH
Confidence 599999999999987643100 1123479999999999999999999999999999997 554555 57999
Q ss_pred ccCCC-EEEEEec
Q 002218 822 SFRPR-ILIVSTP 833 (952)
Q Consensus 822 vLKPG-~LIISTP 833 (952)
+|||| .+++...
T Consensus 70 vLkpGG~l~i~d~ 82 (160)
T PLN02232 70 VLKPGSRVSILDF 82 (160)
T ss_pred HcCcCeEEEEEEC
Confidence 99999 6655433
No 127
>COG4123 Predicted O-methyltransferase [General function prediction only]
Probab=98.53 E-value=4.5e-07 Score=97.57 Aligned_cols=125 Identities=18% Similarity=0.207 Sum_probs=89.1
Q ss_pred HHHhhcCCCCEEEEEcCccchHHHHHhcCCCCCceEEEEeCChHHHHHHHHHHhhhhhcccccCCCCCCCccEEEEEcCc
Q 002218 706 LQHIKESCATTLVDFGCGSGSLLDSLLDYPTALEKIVGVDISQKSLSRAAKIIHSKLSKKLDAAVPCTDVKSAVLFDGSI 785 (952)
Q Consensus 706 ldlL~~~k~krVLDIGCGeG~ll~~LAr~g~~~~qVVGVDISeemLe~ArkrLsa~la~~~~~l~Pr~~~~nVtf~qGDa 785 (952)
.........++|||+|||.|.....++++. +..+|+|||+++++.+.|+++++- .....+|+++++|+
T Consensus 37 ~~~~~~~~~~~IlDlGaG~G~l~L~la~r~-~~a~I~~VEiq~~~a~~A~~nv~l-----------n~l~~ri~v~~~Di 104 (248)
T COG4123 37 AAFAPVPKKGRILDLGAGNGALGLLLAQRT-EKAKIVGVEIQEEAAEMAQRNVAL-----------NPLEERIQVIEADI 104 (248)
T ss_pred HhhcccccCCeEEEecCCcCHHHHHHhccC-CCCcEEEEEeCHHHHHHHHHHHHh-----------CcchhceeEehhhH
Confidence 344455568899999999999999999985 238999999999999999988752 12446899999999
Q ss_pred cccCCC--CCCccEEEEcccc----------------ccCChhHHHHHHHHHHHccCCC-EEEEEecCCchhHHHH
Q 002218 786 TVFDSR--LHGFDIGTCLEVI----------------EHMEEDEASQFGNIVLSSFRPR-ILIVSTPNYEYNAILQ 842 (952)
Q Consensus 786 ~dLpf~--d~sFDVVVcieVI----------------EHL~dD~l~~L~eeI~RvLKPG-~LIISTPN~efN~lf~ 842 (952)
.++... ..+||+|+|+==. +|...-....+.+...++|||| .+.+.-|-.....++.
T Consensus 105 ~~~~~~~~~~~fD~Ii~NPPyf~~~~~~~~~~~~~~Ar~e~~~~le~~i~~a~~~lk~~G~l~~V~r~erl~ei~~ 180 (248)
T COG4123 105 KEFLKALVFASFDLIICNPPYFKQGSRLNENPLRAIARHEITLDLEDLIRAAAKLLKPGGRLAFVHRPERLAEIIE 180 (248)
T ss_pred HHhhhcccccccCEEEeCCCCCCCccccCcChhhhhhhhhhcCCHHHHHHHHHHHccCCCEEEEEecHHHHHHHHH
Confidence 887542 3469999994211 2222223456677789999998 5555444333444443
No 128
>PRK14966 unknown domain/N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase fusion protein; Provisional
Probab=98.51 E-value=1.5e-06 Score=99.66 Aligned_cols=89 Identities=21% Similarity=0.134 Sum_probs=65.9
Q ss_pred hHHHHHHHHHHHhhcCCCCEEEEEcCccchHHHHHhcCCCCCceEEEEeCChHHHHHHHHHHhhhhhcccccCCCCCCCc
Q 002218 697 LSKQRVEYALQHIKESCATTLVDFGCGSGSLLDSLLDYPTALEKIVGVDISQKSLSRAAKIIHSKLSKKLDAAVPCTDVK 776 (952)
Q Consensus 697 L~~QR~efVldlL~~~k~krVLDIGCGeG~ll~~LAr~g~~~~qVVGVDISeemLe~ArkrLsa~la~~~~~l~Pr~~~~ 776 (952)
..+..++.+.+.+. ++.+|||+|||+|.++..+++.. +..+|+|+|+|++|++.|++++.. .+ .
T Consensus 237 eTE~LVe~aL~~l~--~~~rVLDLGcGSG~IaiaLA~~~-p~a~VtAVDiS~~ALe~AreNa~~------------~g-~ 300 (423)
T PRK14966 237 ETEHLVEAVLARLP--ENGRVWDLGTGSGAVAVTVALER-PDAFVRASDISPPALETARKNAAD------------LG-A 300 (423)
T ss_pred cHHHHHHHhhhccC--CCCEEEEEeChhhHHHHHHHHhC-CCCEEEEEECCHHHHHHHHHHHHH------------cC-C
Confidence 34444555544433 45699999999999999888653 247999999999999999987642 12 2
Q ss_pred cEEEEEcCccccCC-CCCCccEEEEc
Q 002218 777 SAVLFDGSITVFDS-RLHGFDIGTCL 801 (952)
Q Consensus 777 nVtf~qGDa~dLpf-~d~sFDVVVci 801 (952)
+++++++|+.+... ....||+|+|+
T Consensus 301 rV~fi~gDl~e~~l~~~~~FDLIVSN 326 (423)
T PRK14966 301 RVEFAHGSWFDTDMPSEGKWDIIVSN 326 (423)
T ss_pred cEEEEEcchhccccccCCCccEEEEC
Confidence 79999999866433 24579999994
No 129
>COG4976 Predicted methyltransferase (contains TPR repeat) [General function prediction only]
Probab=98.50 E-value=4.6e-08 Score=103.68 Aligned_cols=100 Identities=22% Similarity=0.345 Sum_probs=75.9
Q ss_pred CCCEEEEEcCccchHHHHHhcCCCCCceEEEEeCChHHHHHHHHHHhhhhhcccccCCCCCCCccEEEEEcCccccC--C
Q 002218 713 CATTLVDFGCGSGSLLDSLLDYPTALEKIVGVDISQKSLSRAAKIIHSKLSKKLDAAVPCTDVKSAVLFDGSITVFD--S 790 (952)
Q Consensus 713 k~krVLDIGCGeG~ll~~LAr~g~~~~qVVGVDISeemLe~ArkrLsa~la~~~~~l~Pr~~~~nVtf~qGDa~dLp--f 790 (952)
+-+++||+|||+|.....|.... .+++|||||+.||+.|.++- . --+++++++..+- .
T Consensus 125 ~F~~~lDLGCGTGL~G~~lR~~a---~~ltGvDiS~nMl~kA~eKg---------------~--YD~L~~Aea~~Fl~~~ 184 (287)
T COG4976 125 PFRRMLDLGCGTGLTGEALRDMA---DRLTGVDISENMLAKAHEKG---------------L--YDTLYVAEAVLFLEDL 184 (287)
T ss_pred ccceeeecccCcCcccHhHHHHH---hhccCCchhHHHHHHHHhcc---------------c--hHHHHHHHHHHHhhhc
Confidence 45799999999999999888776 78999999999999997641 1 1134455554332 3
Q ss_pred CCCCccEEEEccccccCChhHHHHHHHHHHHccCCC-EEEEEecC
Q 002218 791 RLHGFDIGTCLEVIEHMEEDEASQFGNIVLSSFRPR-ILIVSTPN 834 (952)
Q Consensus 791 ~d~sFDVVVcieVIEHL~dD~l~~L~eeI~RvLKPG-~LIISTPN 834 (952)
....||+|+..+|+.++. +-...|. -+.+.|+|| .+++++-.
T Consensus 185 ~~er~DLi~AaDVl~YlG-~Le~~~~-~aa~~L~~gGlfaFSvE~ 227 (287)
T COG4976 185 TQERFDLIVAADVLPYLG-ALEGLFA-GAAGLLAPGGLFAFSVET 227 (287)
T ss_pred cCCcccchhhhhHHHhhc-chhhHHH-HHHHhcCCCceEEEEecc
Confidence 467899999999999998 3334554 589999999 77777654
No 130
>COG2813 RsmC 16S RNA G1207 methylase RsmC [Translation, ribosomal structure and biogenesis]
Probab=98.50 E-value=1.4e-06 Score=95.95 Aligned_cols=110 Identities=16% Similarity=0.215 Sum_probs=82.4
Q ss_pred HHHHHHHhhcCCCCEEEEEcCccchHHHHHhcCCCCCceEEEEeCChHHHHHHHHHHhhhhhcccccCCCCCCCccEEEE
Q 002218 702 VEYALQHIKESCATTLVDFGCGSGSLLDSLLDYPTALEKIVGVDISQKSLSRAAKIIHSKLSKKLDAAVPCTDVKSAVLF 781 (952)
Q Consensus 702 ~efVldlL~~~k~krVLDIGCGeG~ll~~LAr~g~~~~qVVGVDISeemLe~ArkrLsa~la~~~~~l~Pr~~~~nVtf~ 781 (952)
-+.+++.+......+|||+|||.|.++..|++.. +..+++-+|++..+|+.|++++... +..+..++
T Consensus 147 S~lLl~~l~~~~~~~vlDlGCG~Gvlg~~la~~~-p~~~vtmvDvn~~Av~~ar~Nl~~N------------~~~~~~v~ 213 (300)
T COG2813 147 SRLLLETLPPDLGGKVLDLGCGYGVLGLVLAKKS-PQAKLTLVDVNARAVESARKNLAAN------------GVENTEVW 213 (300)
T ss_pred HHHHHHhCCccCCCcEEEeCCCccHHHHHHHHhC-CCCeEEEEecCHHHHHHHHHhHHHc------------CCCccEEE
Confidence 3456777776666799999999999999999987 5789999999999999999987632 33344677
Q ss_pred EcCccccCCCCCCccEEEEccccccCC---hhHHHHHHHHHHHccCCC
Q 002218 782 DGSITVFDSRLHGFDIGTCLEVIEHME---EDEASQFGNIVLSSFRPR 826 (952)
Q Consensus 782 qGDa~dLpf~d~sFDVVVcieVIEHL~---dD~l~~L~eeI~RvLKPG 826 (952)
..|+.+--. + +||+|+|+==||-=. .+....|.....+.|++|
T Consensus 214 ~s~~~~~v~-~-kfd~IisNPPfh~G~~v~~~~~~~~i~~A~~~L~~g 259 (300)
T COG2813 214 ASNLYEPVE-G-KFDLIISNPPFHAGKAVVHSLAQEIIAAAARHLKPG 259 (300)
T ss_pred Eeccccccc-c-cccEEEeCCCccCCcchhHHHHHHHHHHHHHhhccC
Confidence 777655432 3 899999975554222 122346667799999998
No 131
>PRK15128 23S rRNA m(5)C1962 methyltransferase; Provisional
Probab=98.48 E-value=5.3e-06 Score=94.72 Aligned_cols=141 Identities=17% Similarity=0.123 Sum_probs=95.6
Q ss_pred CCCEEEEEcCccchHHHHHhcCCCCCceEEEEeCChHHHHHHHHHHhhhhhcccccCCCCCCC--ccEEEEEcCccccCC
Q 002218 713 CATTLVDFGCGSGSLLDSLLDYPTALEKIVGVDISQKSLSRAAKIIHSKLSKKLDAAVPCTDV--KSAVLFDGSITVFDS 790 (952)
Q Consensus 713 k~krVLDIGCGeG~ll~~LAr~g~~~~qVVGVDISeemLe~ArkrLsa~la~~~~~l~Pr~~~--~nVtf~qGDa~dLpf 790 (952)
++++|||+|||+|.++...+..+. .+|++||+|+.+++.|++++.. .+. .+++++++|+.+...
T Consensus 220 ~g~rVLDlfsgtG~~~l~aa~~ga--~~V~~VD~s~~al~~a~~N~~~------------Ngl~~~~v~~i~~D~~~~l~ 285 (396)
T PRK15128 220 ENKRVLNCFSYTGGFAVSALMGGC--SQVVSVDTSQEALDIARQNVEL------------NKLDLSKAEFVRDDVFKLLR 285 (396)
T ss_pred CCCeEEEeccCCCHHHHHHHhCCC--CEEEEEECCHHHHHHHHHHHHH------------cCCCCCcEEEEEccHHHHHH
Confidence 578999999999999987665542 6999999999999999988752 122 378999999977521
Q ss_pred ----CCCCccEEEEcccc--c---cCCh--hHHHHHHHHHHHccCCC-EEEEEecCCchhHHHHhhccCccCCCCcchhh
Q 002218 791 ----RLHGFDIGTCLEVI--E---HMEE--DEASQFGNIVLSSFRPR-ILIVSTPNYEYNAILQKSSSTIQEDDPDEKTQ 858 (952)
Q Consensus 791 ----~d~sFDVVVcieVI--E---HL~d--D~l~~L~eeI~RvLKPG-~LIISTPN~efN~lf~~L~~~ta~eYPde~~g 858 (952)
....||+|++.=-- . .+.. .....+.....++|+|| .++..+-+.
T Consensus 286 ~~~~~~~~fDlVilDPP~f~~~k~~l~~~~~~y~~l~~~a~~lLk~gG~lv~~scs~----------------------- 342 (396)
T PRK15128 286 TYRDRGEKFDVIVMDPPKFVENKSQLMGACRGYKDINMLAIQLLNPGGILLTFSCSG----------------------- 342 (396)
T ss_pred HHHhcCCCCCEEEECCCCCCCChHHHHHHHHHHHHHHHHHHHHcCCCeEEEEEeCCC-----------------------
Confidence 24579999985110 0 0000 01223334578999999 444443221
Q ss_pred hccccccCCCCccccCHHHHHHHHHHHHHHcCcEEEEEeecCCCC
Q 002218 859 LQSCKFRNHDHKFEWTRDQFNCWATELAARHNYSVEFSGVGGSGD 903 (952)
Q Consensus 859 ~~~~~fRh~DHkFEWTReEFqsWae~La~q~GYsVefsGVG~~p~ 903 (952)
..+.++|.+...+.+.+.|-.+...+....+.
T Consensus 343 -------------~~~~~~f~~~v~~aa~~~~~~~~~l~~~~~~~ 374 (396)
T PRK15128 343 -------------LMTSDLFQKIIADAAIDAGRDVQFIEQFRQAA 374 (396)
T ss_pred -------------cCCHHHHHHHHHHHHHHcCCeEEEEEEcCCCC
Confidence 13557788777777888888888777665443
No 132
>PHA03412 putative methyltransferase; Provisional
Probab=98.45 E-value=1.4e-06 Score=93.48 Aligned_cols=101 Identities=14% Similarity=0.140 Sum_probs=72.9
Q ss_pred CCCEEEEEcCccchHHHHHhcCCC--CCceEEEEeCChHHHHHHHHHHhhhhhcccccCCCCCCCccEEEEEcCccccCC
Q 002218 713 CATTLVDFGCGSGSLLDSLLDYPT--ALEKIVGVDISQKSLSRAAKIIHSKLSKKLDAAVPCTDVKSAVLFDGSITVFDS 790 (952)
Q Consensus 713 k~krVLDIGCGeG~ll~~LAr~g~--~~~qVVGVDISeemLe~ArkrLsa~la~~~~~l~Pr~~~~nVtf~qGDa~dLpf 790 (952)
.+.+|||+|||+|.++..+++... +..+|+|||+++.+++.|++++ .++.+.++|+...++
T Consensus 49 ~~grVLDlG~GSG~Lalala~~~~~~~~~~V~aVEID~~Al~~Ar~n~-----------------~~~~~~~~D~~~~~~ 111 (241)
T PHA03412 49 TSGSVVDLCAGIGGLSFAMVHMMMYAKPREIVCVELNHTYYKLGKRIV-----------------PEATWINADALTTEF 111 (241)
T ss_pred CCCEEEEccChHHHHHHHHHHhcccCCCcEEEEEECCHHHHHHHHhhc-----------------cCCEEEEcchhcccc
Confidence 467999999999999998876420 1368999999999999998643 257899999987654
Q ss_pred CCCCccEEEEccccc----------cCChhHHHHHHHHHHHccCCCEEEEE
Q 002218 791 RLHGFDIGTCLEVIE----------HMEEDEASQFGNIVLSSFRPRILIVS 831 (952)
Q Consensus 791 ~d~sFDVVVcieVIE----------HL~dD~l~~L~eeI~RvLKPG~LIIS 831 (952)
+..||+||++==.. |-.......|.+...++++||.+|++
T Consensus 112 -~~~FDlIIsNPPY~~~~~~d~~ar~~g~~~~~~li~~A~~Ll~~G~~ILP 161 (241)
T PHA03412 112 -DTLFDMAISNPPFGKIKTSDFKGKYTGAEFEYKVIERASQIARQGTFIIP 161 (241)
T ss_pred -cCCccEEEECCCCCCccccccCCcccccHHHHHHHHHHHHHcCCCEEEeC
Confidence 46899999942111 11112234466667889999976553
No 133
>PRK04457 spermidine synthase; Provisional
Probab=98.43 E-value=1.4e-06 Score=94.14 Aligned_cols=109 Identities=14% Similarity=0.165 Sum_probs=77.5
Q ss_pred CCCCEEEEEcCccchHHHHHhcCCCCCceEEEEeCChHHHHHHHHHHhhhhhcccccCCCCCCCccEEEEEcCcccc-CC
Q 002218 712 SCATTLVDFGCGSGSLLDSLLDYPTALEKIVGVDISQKSLSRAAKIIHSKLSKKLDAAVPCTDVKSAVLFDGSITVF-DS 790 (952)
Q Consensus 712 ~k~krVLDIGCGeG~ll~~LAr~g~~~~qVVGVDISeemLe~ArkrLsa~la~~~~~l~Pr~~~~nVtf~qGDa~dL-pf 790 (952)
..+++|||||||.|.++..+++.. +..+|++||+++++++.|++.+.. ....++++++.+|+.+. ..
T Consensus 65 ~~~~~vL~IG~G~G~l~~~l~~~~-p~~~v~~VEidp~vi~~A~~~f~~-----------~~~~~rv~v~~~Da~~~l~~ 132 (262)
T PRK04457 65 PRPQHILQIGLGGGSLAKFIYTYL-PDTRQTAVEINPQVIAVARNHFEL-----------PENGERFEVIEADGAEYIAV 132 (262)
T ss_pred CCCCEEEEECCCHhHHHHHHHHhC-CCCeEEEEECCHHHHHHHHHHcCC-----------CCCCCceEEEECCHHHHHHh
Confidence 356899999999999999998765 457999999999999999876531 11235899999998664 22
Q ss_pred CCCCccEEEEccc-cccCChh-HHHHHHHHHHHccCCC-EEEEEe
Q 002218 791 RLHGFDIGTCLEV-IEHMEED-EASQFGNIVLSSFRPR-ILIVST 832 (952)
Q Consensus 791 ~d~sFDVVVcieV-IEHL~dD-~l~~L~eeI~RvLKPG-~LIIST 832 (952)
...+||+|++-.. -..++.. ....|.+.+.+.|+|| .+++..
T Consensus 133 ~~~~yD~I~~D~~~~~~~~~~l~t~efl~~~~~~L~pgGvlvin~ 177 (262)
T PRK04457 133 HRHSTDVILVDGFDGEGIIDALCTQPFFDDCRNALSSDGIFVVNL 177 (262)
T ss_pred CCCCCCEEEEeCCCCCCCccccCcHHHHHHHHHhcCCCcEEEEEc
Confidence 2468999987421 0112211 1145667799999999 666643
No 134
>PRK01544 bifunctional N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase/tRNA (m7G46) methyltransferase; Reviewed
Probab=98.42 E-value=3.3e-06 Score=99.07 Aligned_cols=108 Identities=17% Similarity=0.134 Sum_probs=75.2
Q ss_pred CCCEEEEEcCccchHHHHHhcCCCCCceEEEEeCChHHHHHHHHHHhhhhhcccccCCCCCCCccEEEEEcCccccCCCC
Q 002218 713 CATTLVDFGCGSGSLLDSLLDYPTALEKIVGVDISQKSLSRAAKIIHSKLSKKLDAAVPCTDVKSAVLFDGSITVFDSRL 792 (952)
Q Consensus 713 k~krVLDIGCGeG~ll~~LAr~g~~~~qVVGVDISeemLe~ArkrLsa~la~~~~~l~Pr~~~~nVtf~qGDa~dLpf~d 792 (952)
++.+|||+|||+|.++..++... +..+|+|+|+|+.+++.|++++... ....++++.++|+.+. ...
T Consensus 138 ~~~~VLDlG~GsG~iai~la~~~-p~~~v~avDis~~al~~A~~N~~~~-----------~l~~~v~~~~~D~~~~-~~~ 204 (506)
T PRK01544 138 KFLNILELGTGSGCIAISLLCEL-PNANVIATDISLDAIEVAKSNAIKY-----------EVTDRIQIIHSNWFEN-IEK 204 (506)
T ss_pred CCCEEEEccCchhHHHHHHHHHC-CCCeEEEEECCHHHHHHHHHHHHHc-----------CCccceeeeecchhhh-CcC
Confidence 34689999999999999888653 2379999999999999999876421 1123689999998652 234
Q ss_pred CCccEEEEc--------------cccccCC-------h---hHHHHHHHHHHHccCCC-EEEEEec
Q 002218 793 HGFDIGTCL--------------EVIEHME-------E---DEASQFGNIVLSSFRPR-ILIVSTP 833 (952)
Q Consensus 793 ~sFDVVVci--------------eVIEHL~-------d---D~l~~L~eeI~RvLKPG-~LIISTP 833 (952)
..||+|+|. +++.|-+ + +....+.+.+.++|+|| .+++..-
T Consensus 205 ~~fDlIvsNPPYi~~~~~~~l~~~v~~~EP~~AL~gg~dGl~~~~~il~~a~~~L~~gG~l~lEig 270 (506)
T PRK01544 205 QKFDFIVSNPPYISHSEKSEMAIETINYEPSIALFAEEDGLQAYFIIAENAKQFLKPNGKIILEIG 270 (506)
T ss_pred CCccEEEECCCCCCchhhhhcCchhhccCcHHHhcCCccHHHHHHHHHHHHHHhccCCCEEEEEEC
Confidence 689999993 1222221 1 11234556788899998 6665543
No 135
>PLN02366 spermidine synthase
Probab=98.41 E-value=2.7e-06 Score=94.24 Aligned_cols=110 Identities=16% Similarity=0.124 Sum_probs=78.8
Q ss_pred CCCCEEEEEcCccchHHHHHhcCCCCCceEEEEeCChHHHHHHHHHHhhhhhcccccCCCCCCCccEEEEEcCccccCC-
Q 002218 712 SCATTLVDFGCGSGSLLDSLLDYPTALEKIVGVDISQKSLSRAAKIIHSKLSKKLDAAVPCTDVKSAVLFDGSITVFDS- 790 (952)
Q Consensus 712 ~k~krVLDIGCGeG~ll~~LAr~g~~~~qVVGVDISeemLe~ArkrLsa~la~~~~~l~Pr~~~~nVtf~qGDa~dLpf- 790 (952)
..+++||+||||.|..++.++++. +..+|+.||+++.+++.|++.+..... ....++++++.+|+...-.
T Consensus 90 ~~pkrVLiIGgG~G~~~rellk~~-~v~~V~~VEiD~~Vi~~ar~~f~~~~~--------~~~dpRv~vi~~Da~~~l~~ 160 (308)
T PLN02366 90 PNPKKVLVVGGGDGGVLREIARHS-SVEQIDICEIDKMVIDVSKKFFPDLAV--------GFDDPRVNLHIGDGVEFLKN 160 (308)
T ss_pred CCCCeEEEEcCCccHHHHHHHhCC-CCCeEEEEECCHHHHHHHHHhhhhhcc--------ccCCCceEEEEChHHHHHhh
Confidence 357899999999999999999885 457999999999999999887642100 1134589999999865422
Q ss_pred -CCCCccEEEEccccccCChhH--HHHHHHHHHHccCCCEEEE
Q 002218 791 -RLHGFDIGTCLEVIEHMEEDE--ASQFGNIVLSSFRPRILIV 830 (952)
Q Consensus 791 -~d~sFDVVVcieVIEHL~dD~--l~~L~eeI~RvLKPG~LII 830 (952)
..+.||+|++-..-.+.+... -..|.+.+.+.|+||.+++
T Consensus 161 ~~~~~yDvIi~D~~dp~~~~~~L~t~ef~~~~~~~L~pgGvlv 203 (308)
T PLN02366 161 APEGTYDAIIVDSSDPVGPAQELFEKPFFESVARALRPGGVVC 203 (308)
T ss_pred ccCCCCCEEEEcCCCCCCchhhhhHHHHHHHHHHhcCCCcEEE
Confidence 246799999854332222111 2345677999999995544
No 136
>KOG2361 consensus Predicted methyltransferase [General function prediction only]
Probab=98.39 E-value=1.6e-06 Score=92.86 Aligned_cols=104 Identities=19% Similarity=0.241 Sum_probs=79.1
Q ss_pred CEEEEEcCccchHHHHHhcCCC-CCceEEEEeCChHHHHHHHHHHhhhhhcccccCCCCCCCccEEEEEcCccc----cC
Q 002218 715 TTLVDFGCGSGSLLDSLLDYPT-ALEKIVGVDISQKSLSRAAKIIHSKLSKKLDAAVPCTDVKSAVLFDGSITV----FD 789 (952)
Q Consensus 715 krVLDIGCGeG~ll~~LAr~g~-~~~qVVGVDISeemLe~ArkrLsa~la~~~~~l~Pr~~~~nVtf~qGDa~d----Lp 789 (952)
.+||+||||.|.....+.+..+ +...|++.|.|+.+++..+++.. ....++.-...|+.. -+
T Consensus 73 ~~ilEvGCGvGNtvfPll~~~~n~~l~v~acDfsp~Ai~~vk~~~~-------------~~e~~~~afv~Dlt~~~~~~~ 139 (264)
T KOG2361|consen 73 ETILEVGCGVGNTVFPLLKTSPNNRLKVYACDFSPRAIELVKKSSG-------------YDESRVEAFVWDLTSPSLKEP 139 (264)
T ss_pred hhheeeccCCCcccchhhhcCCCCCeEEEEcCCChHHHHHHHhccc-------------cchhhhcccceeccchhccCC
Confidence 3899999999999988887641 22789999999999999876421 112234444444433 23
Q ss_pred CCCCCccEEEEccccccCChhHHHHHHHHHHHccCCC-EEEEE
Q 002218 790 SRLHGFDIGTCLEVIEHMEEDEASQFGNIVLSSFRPR-ILIVS 831 (952)
Q Consensus 790 f~d~sFDVVVcieVIEHL~dD~l~~L~eeI~RvLKPG-~LIIS 831 (952)
...+++|+|++++||--++++.....++++.++|||| .+++-
T Consensus 140 ~~~~svD~it~IFvLSAi~pek~~~a~~nl~~llKPGG~llfr 182 (264)
T KOG2361|consen 140 PEEGSVDIITLIFVLSAIHPEKMQSVIKNLRTLLKPGGSLLFR 182 (264)
T ss_pred CCcCccceEEEEEEEeccChHHHHHHHHHHHHHhCCCcEEEEe
Confidence 4568999999999999999999888889999999999 55553
No 137
>COG2263 Predicted RNA methylase [Translation, ribosomal structure and biogenesis]
Probab=98.38 E-value=1.6e-06 Score=89.96 Aligned_cols=78 Identities=18% Similarity=0.184 Sum_probs=64.3
Q ss_pred HHHhhcCCCCEEEEEcCccchHHHHHhcCCCCCceEEEEeCChHHHHHHHHHHhhhhhcccccCCCCCCCccEEEEEcCc
Q 002218 706 LQHIKESCATTLVDFGCGSGSLLDSLLDYPTALEKIVGVDISQKSLSRAAKIIHSKLSKKLDAAVPCTDVKSAVLFDGSI 785 (952)
Q Consensus 706 ldlL~~~k~krVLDIGCGeG~ll~~LAr~g~~~~qVVGVDISeemLe~ArkrLsa~la~~~~~l~Pr~~~~nVtf~qGDa 785 (952)
...-....+++|+|+|||+|.++...+-.|+ ..|+|||+++++++.++++..+ ...+++|+.+|+
T Consensus 38 a~~~g~l~g~~V~DlG~GTG~La~ga~~lGa--~~V~~vdiD~~a~ei~r~N~~~-------------l~g~v~f~~~dv 102 (198)
T COG2263 38 AYLRGDLEGKTVLDLGAGTGILAIGAALLGA--SRVLAVDIDPEALEIARANAEE-------------LLGDVEFVVADV 102 (198)
T ss_pred HHHcCCcCCCEEEEcCCCcCHHHHHHHhcCC--cEEEEEecCHHHHHHHHHHHHh-------------hCCceEEEEcch
Confidence 3344566888999999999999998888885 8999999999999999987653 234799999999
Q ss_pred cccCCCCCCccEEEEc
Q 002218 786 TVFDSRLHGFDIGTCL 801 (952)
Q Consensus 786 ~dLpf~d~sFDVVVci 801 (952)
.++. ..||.|+++
T Consensus 103 ~~~~---~~~dtvimN 115 (198)
T COG2263 103 SDFR---GKFDTVIMN 115 (198)
T ss_pred hhcC---CccceEEEC
Confidence 8874 568887773
No 138
>TIGR00417 speE spermidine synthase. the SpeE subunit of spermidine synthase catalysesthe reaction (putrescine + S-adenosylmethioninamine = spermidine + 5'-methylthioadenosine) and is involved in polyamine biosynthesis and in the biosynthesis of spermidine from arganine. The region between residues 77 and 120 of the seed alignment is thought to be involved in binding to decarboxylated SAM.
Probab=98.37 E-value=3.6e-06 Score=90.83 Aligned_cols=111 Identities=18% Similarity=0.199 Sum_probs=76.3
Q ss_pred CCCCEEEEEcCccchHHHHHhcCCCCCceEEEEeCChHHHHHHHHHHhhhhhcccccCCCCCCCccEEEEEcCcccc-CC
Q 002218 712 SCATTLVDFGCGSGSLLDSLLDYPTALEKIVGVDISQKSLSRAAKIIHSKLSKKLDAAVPCTDVKSAVLFDGSITVF-DS 790 (952)
Q Consensus 712 ~k~krVLDIGCGeG~ll~~LAr~g~~~~qVVGVDISeemLe~ArkrLsa~la~~~~~l~Pr~~~~nVtf~qGDa~dL-pf 790 (952)
..+++||+||||+|.++..+++.. +..+++++|+++++++.|++.+..... ....+++++..+|..+. ..
T Consensus 71 ~~p~~VL~iG~G~G~~~~~ll~~~-~~~~v~~veid~~vi~~a~~~~~~~~~--------~~~~~~v~i~~~D~~~~l~~ 141 (270)
T TIGR00417 71 PNPKHVLVIGGGDGGVLREVLKHK-SVEKATLVDIDEKVIELSKKFLPSLAG--------SYDDPRVDLQIDDGFKFLAD 141 (270)
T ss_pred CCCCEEEEEcCCchHHHHHHHhCC-CcceEEEEeCCHHHHHHHHHHhHhhcc--------cccCCceEEEECchHHHHHh
Confidence 356799999999999999888775 357899999999999999886542110 11235788888887653 22
Q ss_pred CCCCccEEEEccccccCChhH--HHHHHHHHHHccCCC-EEEEE
Q 002218 791 RLHGFDIGTCLEVIEHMEEDE--ASQFGNIVLSSFRPR-ILIVS 831 (952)
Q Consensus 791 ~d~sFDVVVcieVIEHL~dD~--l~~L~eeI~RvLKPG-~LIIS 831 (952)
..+.||+|++-..-..-+... ...+.+.+.+.|+|| .+++.
T Consensus 142 ~~~~yDvIi~D~~~~~~~~~~l~~~ef~~~~~~~L~pgG~lv~~ 185 (270)
T TIGR00417 142 TENTFDVIIVDSTDPVGPAETLFTKEFYELLKKALNEDGIFVAQ 185 (270)
T ss_pred CCCCccEEEEeCCCCCCcccchhHHHHHHHHHHHhCCCcEEEEc
Confidence 246899999854311111111 235556799999999 55544
No 139
>PRK14896 ksgA 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein; Provisional
Probab=98.37 E-value=1.6e-06 Score=92.91 Aligned_cols=87 Identities=13% Similarity=0.192 Sum_probs=69.0
Q ss_pred HHHHHHHhhcCCCCEEEEEcCccchHHHHHhcCCCCCceEEEEeCChHHHHHHHHHHhhhhhcccccCCCCCCCccEEEE
Q 002218 702 VEYALQHIKESCATTLVDFGCGSGSLLDSLLDYPTALEKIVGVDISQKSLSRAAKIIHSKLSKKLDAAVPCTDVKSAVLF 781 (952)
Q Consensus 702 ~efVldlL~~~k~krVLDIGCGeG~ll~~LAr~g~~~~qVVGVDISeemLe~ArkrLsa~la~~~~~l~Pr~~~~nVtf~ 781 (952)
.+.+++.+...++.+|||||||.|.++..+++.+ .+|+|+|+++.+++.+++++. ...+++++
T Consensus 18 ~~~iv~~~~~~~~~~VLEIG~G~G~lt~~L~~~~---~~v~~vEid~~~~~~l~~~~~--------------~~~~v~ii 80 (258)
T PRK14896 18 VDRIVEYAEDTDGDPVLEIGPGKGALTDELAKRA---KKVYAIELDPRLAEFLRDDEI--------------AAGNVEII 80 (258)
T ss_pred HHHHHHhcCCCCcCeEEEEeCccCHHHHHHHHhC---CEEEEEECCHHHHHHHHHHhc--------------cCCCEEEE
Confidence 3456666666677899999999999999999986 689999999999999987653 12479999
Q ss_pred EcCccccCCCCCCccEEEEccccccCC
Q 002218 782 DGSITVFDSRLHGFDIGTCLEVIEHME 808 (952)
Q Consensus 782 qGDa~dLpf~d~sFDVVVcieVIEHL~ 808 (952)
++|+.+++++ .||.|+++-- .++.
T Consensus 81 ~~D~~~~~~~--~~d~Vv~NlP-y~i~ 104 (258)
T PRK14896 81 EGDALKVDLP--EFNKVVSNLP-YQIS 104 (258)
T ss_pred EeccccCCch--hceEEEEcCC-cccC
Confidence 9999887654 5899988644 3443
No 140
>PF01596 Methyltransf_3: O-methyltransferase; InterPro: IPR002935 Members of this family are O-methyltransferases. The family includes also bacterial O-methyltransferases that may be involved in antibiotic production [].; GO: 0008171 O-methyltransferase activity; PDB: 1SUI_C 1SUS_D 3CBG_A 2GPY_B 3TR6_A 2AVD_A 3DUL_B 3DUW_B 2ZTH_A 1VID_A ....
Probab=98.36 E-value=5.6e-06 Score=86.87 Aligned_cols=164 Identities=12% Similarity=0.099 Sum_probs=105.9
Q ss_pred hhHHHHHHHHHHHhhcCCCCEEEEEcCccchHHHHHhcCCCCCceEEEEeCChHHHHHHHHHHhhhhhcccccCCCCCCC
Q 002218 696 PLSKQRVEYALQHIKESCATTLVDFGCGSGSLLDSLLDYPTALEKIVGVDISQKSLSRAAKIIHSKLSKKLDAAVPCTDV 775 (952)
Q Consensus 696 PL~~QR~efVldlL~~~k~krVLDIGCGeG~ll~~LAr~g~~~~qVVGVDISeemLe~ArkrLsa~la~~~~~l~Pr~~~ 775 (952)
.+.+.--+++..++...++++||||||+.|+-+.+|++.-++..+|+.+|++++..+.|++.+... +..
T Consensus 28 ~i~~~~g~lL~~l~~~~~~k~vLEIGt~~GySal~la~~l~~~g~i~tiE~~~~~~~~A~~~~~~a-----------g~~ 96 (205)
T PF01596_consen 28 SISPETGQLLQMLVRLTRPKRVLEIGTFTGYSALWLAEALPEDGKITTIEIDPERAEIARENFRKA-----------GLD 96 (205)
T ss_dssp SHHHHHHHHHHHHHHHHT-SEEEEESTTTSHHHHHHHHTSTTTSEEEEEESSHHHHHHHHHHHHHT-----------TGG
T ss_pred ccCHHHHHHHHHHHHhcCCceEEEeccccccHHHHHHHhhcccceEEEecCcHHHHHHHHHHHHhc-----------CCC
Confidence 455555566666666678999999999999999999976544589999999999999999877531 122
Q ss_pred ccEEEEEcCccccCC----C--CCCccEEEEccccccCChhHHHHHHHHHHHccCCCEEEEEecCCchhHHHHhhccCcc
Q 002218 776 KSAVLFDGSITVFDS----R--LHGFDIGTCLEVIEHMEEDEASQFGNIVLSSFRPRILIVSTPNYEYNAILQKSSSTIQ 849 (952)
Q Consensus 776 ~nVtf~qGDa~dLpf----~--d~sFDVVVcieVIEHL~dD~l~~L~eeI~RvLKPG~LIISTPN~efN~lf~~L~~~ta 849 (952)
.+|+++.||+.+.-. . .+.||+|+. .+-...... +.+.+.++|+||.+||.. |.++....
T Consensus 97 ~~I~~~~gda~~~l~~l~~~~~~~~fD~VFi----Da~K~~y~~-y~~~~~~ll~~ggvii~D-----N~l~~G~V---- 162 (205)
T PF01596_consen 97 DRIEVIEGDALEVLPELANDGEEGQFDFVFI----DADKRNYLE-YFEKALPLLRPGGVIIAD-----NVLWRGSV---- 162 (205)
T ss_dssp GGEEEEES-HHHHHHHHHHTTTTTSEEEEEE----ESTGGGHHH-HHHHHHHHEEEEEEEEEE-----TTTGGGGG----
T ss_pred CcEEEEEeccHhhHHHHHhccCCCceeEEEE----cccccchhh-HHHHHhhhccCCeEEEEc-----ccccccee----
Confidence 489999999976321 1 357999965 344433333 345688999999666653 22222210
Q ss_pred CCCCcchhhhccccccCCCCccccCHHHHHHHHHHHHHHcCcEEEEEeecC
Q 002218 850 EDDPDEKTQLQSCKFRNHDHKFEWTRDQFNCWATELAARHNYSVEFSGVGG 900 (952)
Q Consensus 850 ~eYPde~~g~~~~~fRh~DHkFEWTReEFqsWae~La~q~GYsVefsGVG~ 900 (952)
..+++...- ...++++.+.+...-.|...+..+|+
T Consensus 163 ---------------~~~~~~~~~-~~~ir~f~~~i~~d~~~~~~llpigd 197 (205)
T PF01596_consen 163 ---------------ADPDDEDPK-TVAIREFNEYIANDPRFETVLLPIGD 197 (205)
T ss_dssp ---------------GSTTGGSHH-HHHHHHHHHHHHH-TTEEEEEECSTT
T ss_pred ---------------cCccchhhh-HHHHHHHHHHHHhCCCeeEEEEEeCC
Confidence 011111111 11245555566676788888888887
No 141
>PF05891 Methyltransf_PK: AdoMet dependent proline di-methyltransferase; InterPro: IPR008576 This family consists of several eukaryotic proteins of unknown function that are S-adenosyl-L-methionine-dependent methyltransferase-like.; GO: 0008168 methyltransferase activity; PDB: 1XTP_A 2EX4_B.
Probab=98.35 E-value=3.2e-06 Score=89.50 Aligned_cols=147 Identities=16% Similarity=0.206 Sum_probs=98.7
Q ss_pred CCCEEEEEcCccchHHHHHhcCCCCCceEEEEeCChHHHHHHHHHHhhhhhcccccCCCCCCCccEEEEEcCccccCCCC
Q 002218 713 CATTLVDFGCGSGSLLDSLLDYPTALEKIVGVDISQKSLSRAAKIIHSKLSKKLDAAVPCTDVKSAVLFDGSITVFDSRL 792 (952)
Q Consensus 713 k~krVLDIGCGeG~ll~~LAr~g~~~~qVVGVDISeemLe~ArkrLsa~la~~~~~l~Pr~~~~nVtf~qGDa~dLpf~d 792 (952)
...++||.|+|-|+.+..|.-.. ..+|.-||..+..++.|++.+.. ....-.++++..+.++.+..
T Consensus 55 ~~~~alDcGAGIGRVTk~lLl~~--f~~VDlVEp~~~Fl~~a~~~l~~------------~~~~v~~~~~~gLQ~f~P~~ 120 (218)
T PF05891_consen 55 KFNRALDCGAGIGRVTKGLLLPV--FDEVDLVEPVEKFLEQAKEYLGK------------DNPRVGEFYCVGLQDFTPEE 120 (218)
T ss_dssp --SEEEEET-TTTHHHHHTCCCC---SEEEEEES-HHHHHHHHHHTCC------------GGCCEEEEEES-GGG----T
T ss_pred CcceEEecccccchhHHHHHHHh--cCEeEEeccCHHHHHHHHHHhcc------------cCCCcceEEecCHhhccCCC
Confidence 45789999999999998765432 37999999999999999876532 11234688999999998877
Q ss_pred CCccEEEEccccccCChhHHHHHHHHHHHccCCCEEEEEecCCchhHHHHhhccCccCCCCcchhhhccccccCCCCccc
Q 002218 793 HGFDIGTCLEVIEHMEEDEASQFGNIVLSSFRPRILIVSTPNYEYNAILQKSSSTIQEDDPDEKTQLQSCKFRNHDHKFE 872 (952)
Q Consensus 793 ~sFDVVVcieVIEHL~dD~l~~L~eeI~RvLKPG~LIISTPN~efN~lf~~L~~~ta~eYPde~~g~~~~~fRh~DHkFE 872 (952)
..||+|.+.+++-||.++++-.|.+.+...|+|+.+||.--|-.-.. ...+-..|...-
T Consensus 121 ~~YDlIW~QW~lghLTD~dlv~fL~RCk~~L~~~G~IvvKEN~~~~~---------------------~~~~D~~DsSvT 179 (218)
T PF05891_consen 121 GKYDLIWIQWCLGHLTDEDLVAFLKRCKQALKPNGVIVVKENVSSSG---------------------FDEFDEEDSSVT 179 (218)
T ss_dssp T-EEEEEEES-GGGS-HHHHHHHHHHHHHHEEEEEEEEEEEEEESSS---------------------EEEEETTTTEEE
T ss_pred CcEeEEEehHhhccCCHHHHHHHHHHHHHhCcCCcEEEEEecCCCCC---------------------CcccCCccCeee
Confidence 89999999999999999999999999999999996655544421100 012333455555
Q ss_pred cCHHHHHHHHHHHHHHcCcEEEEEee
Q 002218 873 WTRDQFNCWATELAARHNYSVEFSGV 898 (952)
Q Consensus 873 WTReEFqsWae~La~q~GYsVefsGV 898 (952)
-+.+.|+ ++.+++|+.+...-.
T Consensus 180 Rs~~~~~----~lF~~AGl~~v~~~~ 201 (218)
T PF05891_consen 180 RSDEHFR----ELFKQAGLRLVKEEK 201 (218)
T ss_dssp EEHHHHH----HHHHHCT-EEEEEEE
T ss_pred cCHHHHH----HHHHHcCCEEEEecc
Confidence 5666777 678889999865443
No 142
>PRK10909 rsmD 16S rRNA m(2)G966-methyltransferase; Provisional
Probab=98.35 E-value=3.2e-06 Score=88.23 Aligned_cols=117 Identities=10% Similarity=0.023 Sum_probs=76.0
Q ss_pred HHHHHHHHhhc-CCCCEEEEEcCccchHHHHHhcCCCCCceEEEEeCChHHHHHHHHHHhhhhhcccccCCCCCCCccEE
Q 002218 701 RVEYALQHIKE-SCATTLVDFGCGSGSLLDSLLDYPTALEKIVGVDISQKSLSRAAKIIHSKLSKKLDAAVPCTDVKSAV 779 (952)
Q Consensus 701 R~efVldlL~~-~k~krVLDIGCGeG~ll~~LAr~g~~~~qVVGVDISeemLe~ArkrLsa~la~~~~~l~Pr~~~~nVt 779 (952)
-++.+.+.+.. ..+.+|||+|||+|.++..++..+. .+|++||+++.+++.+++++.. .+..+++
T Consensus 40 v~e~l~~~l~~~~~~~~vLDl~~GsG~l~l~~lsr~a--~~V~~vE~~~~a~~~a~~Nl~~------------~~~~~v~ 105 (199)
T PRK10909 40 VRETLFNWLAPVIVDARCLDCFAGSGALGLEALSRYA--AGATLLEMDRAVAQQLIKNLAT------------LKAGNAR 105 (199)
T ss_pred HHHHHHHHHhhhcCCCEEEEcCCCccHHHHHHHHcCC--CEEEEEECCHHHHHHHHHHHHH------------hCCCcEE
Confidence 33445554432 4567999999999999986444442 7999999999999999887653 1234799
Q ss_pred EEEcCccccC-CCCCCccEEEEccccccCChhHHHHHHHHHH--HccCCC-EEEEEecC
Q 002218 780 LFDGSITVFD-SRLHGFDIGTCLEVIEHMEEDEASQFGNIVL--SSFRPR-ILIVSTPN 834 (952)
Q Consensus 780 f~qGDa~dLp-f~d~sFDVVVcieVIEHL~dD~l~~L~eeI~--RvLKPG-~LIISTPN 834 (952)
++++|+.+.. .....||+|++.==... .......+.+. ++|+|+ .+++..+.
T Consensus 106 ~~~~D~~~~l~~~~~~fDlV~~DPPy~~---g~~~~~l~~l~~~~~l~~~~iv~ve~~~ 161 (199)
T PRK10909 106 VVNTNALSFLAQPGTPHNVVFVDPPFRK---GLLEETINLLEDNGWLADEALIYVESEV 161 (199)
T ss_pred EEEchHHHHHhhcCCCceEEEECCCCCC---ChHHHHHHHHHHCCCcCCCcEEEEEecC
Confidence 9999987632 22346999998533111 11112222233 347888 77776554
No 143
>PRK00274 ksgA 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein; Reviewed
Probab=98.35 E-value=1.5e-06 Score=94.00 Aligned_cols=82 Identities=15% Similarity=0.193 Sum_probs=65.5
Q ss_pred HHHHHHHhhcCCCCEEEEEcCccchHHHHHhcCCCCCceEEEEeCChHHHHHHHHHHhhhhhcccccCCCCCCCccEEEE
Q 002218 702 VEYALQHIKESCATTLVDFGCGSGSLLDSLLDYPTALEKIVGVDISQKSLSRAAKIIHSKLSKKLDAAVPCTDVKSAVLF 781 (952)
Q Consensus 702 ~efVldlL~~~k~krVLDIGCGeG~ll~~LAr~g~~~~qVVGVDISeemLe~ArkrLsa~la~~~~~l~Pr~~~~nVtf~ 781 (952)
.+.+.+.+...++.+|||||||+|.++..|++.+ .+|+|+|++++|++.+++++. . .+++++
T Consensus 31 ~~~i~~~l~~~~~~~VLEiG~G~G~lt~~L~~~~---~~v~avE~d~~~~~~~~~~~~--------------~-~~v~~i 92 (272)
T PRK00274 31 LDKIVDAAGPQPGDNVLEIGPGLGALTEPLLERA---AKVTAVEIDRDLAPILAETFA--------------E-DNLTII 92 (272)
T ss_pred HHHHHHhcCCCCcCeEEEeCCCccHHHHHHHHhC---CcEEEEECCHHHHHHHHHhhc--------------c-CceEEE
Confidence 3456666666677899999999999999999987 589999999999999977542 1 479999
Q ss_pred EcCccccCCCCCCccEEEEc
Q 002218 782 DGSITVFDSRLHGFDIGTCL 801 (952)
Q Consensus 782 qGDa~dLpf~d~sFDVVVci 801 (952)
++|+.++++.+..+|.|+++
T Consensus 93 ~~D~~~~~~~~~~~~~vv~N 112 (272)
T PRK00274 93 EGDALKVDLSELQPLKVVAN 112 (272)
T ss_pred EChhhcCCHHHcCcceEEEe
Confidence 99999887653225777775
No 144
>PF00891 Methyltransf_2: O-methyltransferase; InterPro: IPR001077 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. This domain includes a range of O-methyltransferases some of which utilise S-adenosyl methionine as substrate []. In prokaryotes, the major role of DNA methylation is to protect host DNA against degradation by restriction enzymes. In eukaryotes, DNA methylation has been implicated in the control of several cellular processes, including differentiation, gene regulation, and embryonic development. O-methyltransferases have a common catalytic domain structure, which might be universal among S-adenosyl-L-methionine (AdoMet)-dependent methyltransferases []. Comparative analysis of the predicted amino acid sequences of a number of plant O-methyltransferase cDNA clones show that they share some 32-71% sequence identity, and can be grouped according to the different compounds they utilise as substrates [].; GO: 0008171 O-methyltransferase activity; PDB: 1FPQ_A 1FP1_D 3P9K_B 3P9I_D 3P9C_A 3I53_A 3I5U_A 3I64_A 3I58_A 1ZG3_A ....
Probab=98.34 E-value=3e-06 Score=89.02 Aligned_cols=103 Identities=17% Similarity=0.197 Sum_probs=80.4
Q ss_pred HHHhhcCCCCEEEEEcCccchHHHHHhcCCCCCceEEEEeCChHHHHHHHHHHhhhhhcccccCCCCCCCccEEEEEcCc
Q 002218 706 LQHIKESCATTLVDFGCGSGSLLDSLLDYPTALEKIVGVDISQKSLSRAAKIIHSKLSKKLDAAVPCTDVKSAVLFDGSI 785 (952)
Q Consensus 706 ldlL~~~k~krVLDIGCGeG~ll~~LAr~g~~~~qVVGVDISeemLe~ArkrLsa~la~~~~~l~Pr~~~~nVtf~qGDa 785 (952)
.......+..+|+|||+|.|.++..+++.. |..+++.+|. ++.++.+++ ..+|++..||+
T Consensus 93 ~~~~d~~~~~~vvDvGGG~G~~~~~l~~~~-P~l~~~v~Dl-p~v~~~~~~------------------~~rv~~~~gd~ 152 (241)
T PF00891_consen 93 LEAFDFSGFKTVVDVGGGSGHFAIALARAY-PNLRATVFDL-PEVIEQAKE------------------ADRVEFVPGDF 152 (241)
T ss_dssp HHHSTTTTSSEEEEET-TTSHHHHHHHHHS-TTSEEEEEE--HHHHCCHHH------------------TTTEEEEES-T
T ss_pred hccccccCccEEEeccCcchHHHHHHHHHC-CCCcceeecc-Hhhhhcccc------------------ccccccccccH
Confidence 334444566899999999999999999887 5689999997 888888865 13899999999
Q ss_pred cccCCCCCCccEEEEccccccCChhHHHHHHHHHHHccCCC---EEEEE
Q 002218 786 TVFDSRLHGFDIGTCLEVIEHMEEDEASQFGNIVLSSFRPR---ILIVS 831 (952)
Q Consensus 786 ~dLpf~d~sFDVVVcieVIEHL~dD~l~~L~eeI~RvLKPG---~LIIS 831 (952)
. -+++. +|+++...++|+.++++...+.+++++.|+|| .++|.
T Consensus 153 f-~~~P~--~D~~~l~~vLh~~~d~~~~~iL~~~~~al~pg~~g~llI~ 198 (241)
T PF00891_consen 153 F-DPLPV--ADVYLLRHVLHDWSDEDCVKILRNAAAALKPGKDGRLLII 198 (241)
T ss_dssp T-TCCSS--ESEEEEESSGGGS-HHHHHHHHHHHHHHSEECTTEEEEEE
T ss_pred H-hhhcc--ccceeeehhhhhcchHHHHHHHHHHHHHhCCCCCCeEEEE
Confidence 7 33333 99999999999999999889999999999975 55553
No 145
>PLN02476 O-methyltransferase
Probab=98.34 E-value=7.6e-06 Score=89.65 Aligned_cols=164 Identities=12% Similarity=0.063 Sum_probs=106.7
Q ss_pred hHHHHHHHHHHHhhcCCCCEEEEEcCccchHHHHHhcCCCCCceEEEEeCChHHHHHHHHHHhhhhhcccccCCCCCCCc
Q 002218 697 LSKQRVEYALQHIKESCATTLVDFGCGSGSLLDSLLDYPTALEKIVGVDISQKSLSRAAKIIHSKLSKKLDAAVPCTDVK 776 (952)
Q Consensus 697 L~~QR~efVldlL~~~k~krVLDIGCGeG~ll~~LAr~g~~~~qVVGVDISeemLe~ArkrLsa~la~~~~~l~Pr~~~~ 776 (952)
+.+...+++.-++...++++|||||+|+|+.+.+++..-++..+|+.+|.+++.++.|++.+... +...
T Consensus 102 v~~~~g~lL~~L~~~~~ak~VLEIGT~tGySal~lA~al~~~G~V~TiE~d~e~~~~Ar~n~~~a-----------Gl~~ 170 (278)
T PLN02476 102 VSPDQAQLLAMLVQILGAERCIEVGVYTGYSSLAVALVLPESGCLVACERDSNSLEVAKRYYELA-----------GVSH 170 (278)
T ss_pred cCHHHHHHHHHHHHhcCCCeEEEecCCCCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHc-----------CCCC
Confidence 34444455555666678899999999999999999875333468999999999999999887531 1224
Q ss_pred cEEEEEcCccccCC------CCCCccEEEEccccccCChhHHHHHHHHHHHccCCCEEEEEecCCchhHHHHhhccCccC
Q 002218 777 SAVLFDGSITVFDS------RLHGFDIGTCLEVIEHMEEDEASQFGNIVLSSFRPRILIVSTPNYEYNAILQKSSSTIQE 850 (952)
Q Consensus 777 nVtf~qGDa~dLpf------~d~sFDVVVcieVIEHL~dD~l~~L~eeI~RvLKPG~LIISTPN~efN~lf~~L~~~ta~ 850 (952)
+|+++.||+.+.-. ..+.||+|+.- +-. +.-..+.+.+.++|+||.+|+.. |.+|.....
T Consensus 171 ~I~li~GdA~e~L~~l~~~~~~~~FD~VFID----a~K-~~Y~~y~e~~l~lL~~GGvIV~D-----NvL~~G~V~---- 236 (278)
T PLN02476 171 KVNVKHGLAAESLKSMIQNGEGSSYDFAFVD----ADK-RMYQDYFELLLQLVRVGGVIVMD-----NVLWHGRVA---- 236 (278)
T ss_pred cEEEEEcCHHHHHHHHHhcccCCCCCEEEEC----CCH-HHHHHHHHHHHHhcCCCcEEEEe-----cCccCCccc----
Confidence 89999999976321 13579999653 333 33344556789999999555542 222221100
Q ss_pred CCCcchhhhccccccCCCCccccCHHHHHHHHHHHHHHcCcEEEEEeecCC
Q 002218 851 DDPDEKTQLQSCKFRNHDHKFEWTRDQFNCWATELAARHNYSVEFSGVGGS 901 (952)
Q Consensus 851 eYPde~~g~~~~~fRh~DHkFEWTReEFqsWae~La~q~GYsVefsGVG~~ 901 (952)
.+ ...+.. ...++++.+.+...-.|...+..+|++
T Consensus 237 -----------d~-~~~d~~----t~~ir~fn~~v~~d~~~~~~llPigDG 271 (278)
T PLN02476 237 -----------DP-LVNDAK----TISIRNFNKKLMDDKRVSISMVPIGDG 271 (278)
T ss_pred -----------Cc-ccCCHH----HHHHHHHHHHHhhCCCEEEEEEEeCCe
Confidence 00 001111 124555555677777899989898863
No 146
>TIGR00479 rumA 23S rRNA (uracil-5-)-methyltransferase RumA. This protein family was first proposed to be RNA methyltransferases by homology to the TrmA family. The member from E. coli has now been shown to act as the 23S RNA methyltransferase for the conserved U1939. The gene is now designated rumA and was previously designated ygcA.
Probab=98.34 E-value=3.6e-06 Score=96.21 Aligned_cols=87 Identities=17% Similarity=0.250 Sum_probs=67.8
Q ss_pred HHHHHHHHHHhhcCCCCEEEEEcCccchHHHHHhcCCCCCceEEEEeCChHHHHHHHHHHhhhhhcccccCCCCCCCccE
Q 002218 699 KQRVEYALQHIKESCATTLVDFGCGSGSLLDSLLDYPTALEKIVGVDISQKSLSRAAKIIHSKLSKKLDAAVPCTDVKSA 778 (952)
Q Consensus 699 ~QR~efVldlL~~~k~krVLDIGCGeG~ll~~LAr~g~~~~qVVGVDISeemLe~ArkrLsa~la~~~~~l~Pr~~~~nV 778 (952)
...++.+.+.+...++.+|||+|||+|.++..|++.. .+|+|+|+++.+++.|++++.. .+..++
T Consensus 278 ~~l~~~~~~~l~~~~~~~vLDl~cG~G~~sl~la~~~---~~V~~vE~~~~av~~a~~n~~~------------~~~~nv 342 (431)
T TIGR00479 278 EKLVDRALEALELQGEELVVDAYCGVGTFTLPLAKQA---KSVVGIEVVPESVEKAQQNAEL------------NGIANV 342 (431)
T ss_pred HHHHHHHHHHhccCCCCEEEEcCCCcCHHHHHHHHhC---CEEEEEEcCHHHHHHHHHHHHH------------hCCCce
Confidence 3345556666655566899999999999999999876 6899999999999999987642 234589
Q ss_pred EEEEcCccccC----CCCCCccEEEE
Q 002218 779 VLFDGSITVFD----SRLHGFDIGTC 800 (952)
Q Consensus 779 tf~qGDa~dLp----f~d~sFDVVVc 800 (952)
+++++|+.+.. .....||+|++
T Consensus 343 ~~~~~d~~~~l~~~~~~~~~~D~vi~ 368 (431)
T TIGR00479 343 EFLAGTLETVLPKQPWAGQIPDVLLL 368 (431)
T ss_pred EEEeCCHHHHHHHHHhcCCCCCEEEE
Confidence 99999997631 23457999986
No 147
>PRK01581 speE spermidine synthase; Validated
Probab=98.32 E-value=4.6e-06 Score=94.31 Aligned_cols=115 Identities=13% Similarity=0.048 Sum_probs=77.7
Q ss_pred CCCCEEEEEcCccchHHHHHhcCCCCCceEEEEeCChHHHHHHHHHHhhhhhcccccCCCCCCCccEEEEEcCcccc-CC
Q 002218 712 SCATTLVDFGCGSGSLLDSLLDYPTALEKIVGVDISQKSLSRAAKIIHSKLSKKLDAAVPCTDVKSAVLFDGSITVF-DS 790 (952)
Q Consensus 712 ~k~krVLDIGCGeG~ll~~LAr~g~~~~qVVGVDISeemLe~ArkrLsa~la~~~~~l~Pr~~~~nVtf~qGDa~dL-pf 790 (952)
..+++||+||||+|..++.++++. +..+|++||+++++++.|++.. .+... .......++++++.+|+.++ ..
T Consensus 149 ~~PkrVLIIGgGdG~tlrelLk~~-~v~~It~VEIDpeVIelAr~~~--~L~~~---~~~~~~DpRV~vvi~Da~~fL~~ 222 (374)
T PRK01581 149 IDPKRVLILGGGDGLALREVLKYE-TVLHVDLVDLDGSMINMARNVP--ELVSL---NKSAFFDNRVNVHVCDAKEFLSS 222 (374)
T ss_pred CCCCEEEEECCCHHHHHHHHHhcC-CCCeEEEEeCCHHHHHHHHhcc--ccchh---ccccCCCCceEEEECcHHHHHHh
Confidence 467899999999999999998875 4689999999999999998511 00000 00011346899999999874 33
Q ss_pred CCCCccEEEEccc--cc-cCChhHHHHHHHHHHHccCCCEEEEEe
Q 002218 791 RLHGFDIGTCLEV--IE-HMEEDEASQFGNIVLSSFRPRILIVST 832 (952)
Q Consensus 791 ~d~sFDVVVcieV--IE-HL~dD~l~~L~eeI~RvLKPG~LIIST 832 (952)
....||+|++-.. .. +...---..|.+.+.+.|+||++++..
T Consensus 223 ~~~~YDVIIvDl~DP~~~~~~~LyT~EFy~~~~~~LkPgGV~V~Q 267 (374)
T PRK01581 223 PSSLYDVIIIDFPDPATELLSTLYTSELFARIATFLTEDGAFVCQ 267 (374)
T ss_pred cCCCccEEEEcCCCccccchhhhhHHHHHHHHHHhcCCCcEEEEe
Confidence 3568999998521 11 111111134667899999999554443
No 148
>TIGR02085 meth_trns_rumB 23S rRNA (uracil-5-)-methyltransferase RumB. This family consists of RNA methyltransferases designated RumB, formerly YbjF. Members act on 23S rRNA U747 and the equivalent position in other proteobacterial species. This family is homologous to the other 23S rRNA methyltransferase RumA and to the tRNA methyltransferase TrmA.
Probab=98.32 E-value=4.9e-06 Score=94.01 Aligned_cols=111 Identities=14% Similarity=0.184 Sum_probs=76.0
Q ss_pred HHHHHHHhhcCCCCEEEEEcCccchHHHHHhcCCCCCceEEEEeCChHHHHHHHHHHhhhhhcccccCCCCCCCccEEEE
Q 002218 702 VEYALQHIKESCATTLVDFGCGSGSLLDSLLDYPTALEKIVGVDISQKSLSRAAKIIHSKLSKKLDAAVPCTDVKSAVLF 781 (952)
Q Consensus 702 ~efVldlL~~~k~krVLDIGCGeG~ll~~LAr~g~~~~qVVGVDISeemLe~ArkrLsa~la~~~~~l~Pr~~~~nVtf~ 781 (952)
++.+.+.+....+.+|||+|||+|.++..++..+ .+|+|||+++.+++.|++++.. .+..+++++
T Consensus 222 ~~~~~~~l~~~~~~~vLDL~cG~G~~~l~la~~~---~~v~~vE~~~~av~~a~~N~~~------------~~~~~~~~~ 286 (374)
T TIGR02085 222 YATARQWVREIPVTQMWDLFCGVGGFGLHCAGPD---TQLTGIEIESEAIACAQQSAQM------------LGLDNLSFA 286 (374)
T ss_pred HHHHHHHHHhcCCCEEEEccCCccHHHHHHhhcC---CeEEEEECCHHHHHHHHHHHHH------------cCCCcEEEE
Confidence 3444555544456899999999999999999776 7899999999999999987642 233479999
Q ss_pred EcCccccCCC-CCCccEEEEccccccCChhHHHHHHHHHHHccCCC-EEEEEe
Q 002218 782 DGSITVFDSR-LHGFDIGTCLEVIEHMEEDEASQFGNIVLSSFRPR-ILIVST 832 (952)
Q Consensus 782 qGDa~dLpf~-d~sFDVVVcieVIEHL~dD~l~~L~eeI~RvLKPG-~LIIST 832 (952)
++|+.++... ...||+|++.=--..+. ..+.+.+. .++|+ .++++.
T Consensus 287 ~~d~~~~~~~~~~~~D~vi~DPPr~G~~----~~~l~~l~-~~~p~~ivyvsc 334 (374)
T TIGR02085 287 ALDSAKFATAQMSAPELVLVNPPRRGIG----KELCDYLS-QMAPKFILYSSC 334 (374)
T ss_pred ECCHHHHHHhcCCCCCEEEECCCCCCCc----HHHHHHHH-hcCCCeEEEEEe
Confidence 9999765422 24699998742212222 22233333 46888 555553
No 149
>COG2519 GCD14 tRNA(1-methyladenosine) methyltransferase and related methyltransferases [Translation, ribosomal structure and biogenesis]
Probab=98.28 E-value=4.1e-06 Score=90.30 Aligned_cols=122 Identities=16% Similarity=0.147 Sum_probs=97.3
Q ss_pred hhHHHHHHHHHHHhhcCCCCEEEEEcCccchHHHHHhcCCCCCceEEEEeCChHHHHHHHHHHhhhhhcccccCCCCCCC
Q 002218 696 PLSKQRVEYALQHIKESCATTLVDFGCGSGSLLDSLLDYPTALEKIVGVDISQKSLSRAAKIIHSKLSKKLDAAVPCTDV 775 (952)
Q Consensus 696 PL~~QR~efVldlL~~~k~krVLDIGCGeG~ll~~LAr~g~~~~qVVGVDISeemLe~ArkrLsa~la~~~~~l~Pr~~~ 775 (952)
.+|+.-..+|...+...++.+|||.|.|+|.++.+|++.-++..+|+.+|+.++.++.|+++++... ..
T Consensus 77 iIyPKD~~~I~~~~gi~pg~rVlEAGtGSG~lt~~La~~vg~~G~v~tyE~r~d~~k~A~~Nl~~~~-----------l~ 145 (256)
T COG2519 77 IIYPKDAGYIVARLGISPGSRVLEAGTGSGALTAYLARAVGPEGHVTTYEIREDFAKTARENLSEFG-----------LG 145 (256)
T ss_pred eecCCCHHHHHHHcCCCCCCEEEEcccCchHHHHHHHHhhCCCceEEEEEecHHHHHHHHHHHHHhc-----------cc
Confidence 3444445578888888999999999999999999999755466899999999999999999987531 12
Q ss_pred ccEEEEEcCccccCCCCCCccEEEEccccccCChhHHHHHHHHHHHccCCC-EEEEEecCCc
Q 002218 776 KSAVLFDGSITVFDSRLHGFDIGTCLEVIEHMEEDEASQFGNIVLSSFRPR-ILIVSTPNYE 836 (952)
Q Consensus 776 ~nVtf~qGDa~dLpf~d~sFDVVVcieVIEHL~dD~l~~L~eeI~RvLKPG-~LIISTPN~e 836 (952)
.++++..+|+.+.-+.+ .||+|+. -|+ ++...+ +.+...|||| .+++-+|+.+
T Consensus 146 d~v~~~~~Dv~~~~~~~-~vDav~L-----Dmp-~PW~~l-e~~~~~Lkpgg~~~~y~P~ve 199 (256)
T COG2519 146 DRVTLKLGDVREGIDEE-DVDAVFL-----DLP-DPWNVL-EHVSDALKPGGVVVVYSPTVE 199 (256)
T ss_pred cceEEEecccccccccc-ccCEEEE-----cCC-ChHHHH-HHHHHHhCCCcEEEEEcCCHH
Confidence 24899999998877655 9999975 345 555555 4699999999 8888888854
No 150
>TIGR00755 ksgA dimethyladenosine transferase. Alternate name: S-adenosylmethionine--6-N',N'-adenosyl (rRNA) dimethyltransferase
Probab=98.25 E-value=7.3e-06 Score=87.46 Aligned_cols=81 Identities=15% Similarity=0.242 Sum_probs=64.2
Q ss_pred HHHHHHHHhhcCCCCEEEEEcCccchHHHHHhcCCCCCceEEEEeCChHHHHHHHHHHhhhhhcccccCCCCCCCccEEE
Q 002218 701 RVEYALQHIKESCATTLVDFGCGSGSLLDSLLDYPTALEKIVGVDISQKSLSRAAKIIHSKLSKKLDAAVPCTDVKSAVL 780 (952)
Q Consensus 701 R~efVldlL~~~k~krVLDIGCGeG~ll~~LAr~g~~~~qVVGVDISeemLe~ArkrLsa~la~~~~~l~Pr~~~~nVtf 780 (952)
-.+.+++.+...++.+|||||||+|.++..|++.+ .+|+|+|+++.+++.+++++. ...++++
T Consensus 17 i~~~i~~~~~~~~~~~VLEiG~G~G~lt~~L~~~~---~~v~~iE~d~~~~~~l~~~~~--------------~~~~v~v 79 (253)
T TIGR00755 17 VIQKIVEAANVLEGDVVLEIGPGLGALTEPLLKRA---KKVTAIEIDPRLAEILRKLLS--------------LYERLEV 79 (253)
T ss_pred HHHHHHHhcCCCCcCEEEEeCCCCCHHHHHHHHhC---CcEEEEECCHHHHHHHHHHhC--------------cCCcEEE
Confidence 34456666666678899999999999999999988 579999999999999976542 1247999
Q ss_pred EEcCccccCCCCCCcc---EEEE
Q 002218 781 FDGSITVFDSRLHGFD---IGTC 800 (952)
Q Consensus 781 ~qGDa~dLpf~d~sFD---VVVc 800 (952)
.++|+.++++. .|| +|++
T Consensus 80 ~~~D~~~~~~~--~~d~~~~vvs 100 (253)
T TIGR00755 80 IEGDALKVDLP--DFPKQLKVVS 100 (253)
T ss_pred EECchhcCChh--HcCCcceEEE
Confidence 99999888764 455 5544
No 151
>PRK04148 hypothetical protein; Provisional
Probab=98.25 E-value=9.5e-06 Score=80.32 Aligned_cols=104 Identities=13% Similarity=0.159 Sum_probs=75.0
Q ss_pred HHHHHHhhcCCCCEEEEEcCccch-HHHHHhcCCCCCceEEEEeCChHHHHHHHHHHhhhhhcccccCCCCCCCccEEEE
Q 002218 703 EYALQHIKESCATTLVDFGCGSGS-LLDSLLDYPTALEKIVGVDISQKSLSRAAKIIHSKLSKKLDAAVPCTDVKSAVLF 781 (952)
Q Consensus 703 efVldlL~~~k~krVLDIGCGeG~-ll~~LAr~g~~~~qVVGVDISeemLe~ArkrLsa~la~~~~~l~Pr~~~~nVtf~ 781 (952)
+++.+.+...++.+|||||||.|. ++..|++.| .+|+|+|+++..++.++++ .++++
T Consensus 6 ~~l~~~~~~~~~~kileIG~GfG~~vA~~L~~~G---~~ViaIDi~~~aV~~a~~~-------------------~~~~v 63 (134)
T PRK04148 6 EFIAENYEKGKNKKIVELGIGFYFKVAKKLKESG---FDVIVIDINEKAVEKAKKL-------------------GLNAF 63 (134)
T ss_pred HHHHHhcccccCCEEEEEEecCCHHHHHHHHHCC---CEEEEEECCHHHHHHHHHh-------------------CCeEE
Confidence 456666665567899999999996 888999887 8999999999999988653 36788
Q ss_pred EcCccccCCC-CCCccEEEEccccccCChhHHHHHHHHHHHccCCCEEEEEecC
Q 002218 782 DGSITVFDSR-LHGFDIGTCLEVIEHMEEDEASQFGNIVLSSFRPRILIVSTPN 834 (952)
Q Consensus 782 qGDa~dLpf~-d~sFDVVVcieVIEHL~dD~l~~L~eeI~RvLKPG~LIISTPN 834 (952)
.+|+.+.++. -..+|+|.++-- +++-...+. .+++-+.- -++|.+-.
T Consensus 64 ~dDlf~p~~~~y~~a~liysirp----p~el~~~~~-~la~~~~~-~~~i~~l~ 111 (134)
T PRK04148 64 VDDLFNPNLEIYKNAKLIYSIRP----PRDLQPFIL-ELAKKINV-PLIIKPLS 111 (134)
T ss_pred ECcCCCCCHHHHhcCCEEEEeCC----CHHHHHHHH-HHHHHcCC-CEEEEcCC
Confidence 9999887765 568999998754 222233333 35554433 34444443
No 152
>COG2890 HemK Methylase of polypeptide chain release factors [Translation, ribosomal structure and biogenesis]
Probab=98.24 E-value=4e-06 Score=91.58 Aligned_cols=71 Identities=20% Similarity=0.261 Sum_probs=56.8
Q ss_pred EEEEEcCccchHHHHHhcCCCCCceEEEEeCChHHHHHHHHHHhhhhhcccccCCCCCCCccEEEEEcCccccCCCCCCc
Q 002218 716 TLVDFGCGSGSLLDSLLDYPTALEKIVGVDISQKSLSRAAKIIHSKLSKKLDAAVPCTDVKSAVLFDGSITVFDSRLHGF 795 (952)
Q Consensus 716 rVLDIGCGeG~ll~~LAr~g~~~~qVVGVDISeemLe~ArkrLsa~la~~~~~l~Pr~~~~nVtf~qGDa~dLpf~d~sF 795 (952)
+|||+|||+|..+..++... +..+|+|+|+|+.+++.|+++... .+..++.++++|+.+- -.+.|
T Consensus 113 ~ilDlGTGSG~iai~la~~~-~~~~V~a~Dis~~Al~~A~~Na~~------------~~l~~~~~~~~dlf~~--~~~~f 177 (280)
T COG2890 113 RILDLGTGSGAIAIALAKEG-PDAEVIAVDISPDALALARENAER------------NGLVRVLVVQSDLFEP--LRGKF 177 (280)
T ss_pred cEEEecCChHHHHHHHHhhC-cCCeEEEEECCHHHHHHHHHHHHH------------cCCccEEEEeeecccc--cCCce
Confidence 89999999999999999987 457999999999999999988652 2334667777765442 23389
Q ss_pred cEEEEc
Q 002218 796 DIGTCL 801 (952)
Q Consensus 796 DVVVci 801 (952)
|+|+|+
T Consensus 178 DlIVsN 183 (280)
T COG2890 178 DLIVSN 183 (280)
T ss_pred eEEEeC
Confidence 999994
No 153
>PRK03612 spermidine synthase; Provisional
Probab=98.23 E-value=5.7e-06 Score=97.34 Aligned_cols=113 Identities=16% Similarity=0.214 Sum_probs=78.0
Q ss_pred CCCCEEEEEcCccchHHHHHhcCCCCCceEEEEeCChHHHHHHHHH--HhhhhhcccccCCCCCCCccEEEEEcCccccC
Q 002218 712 SCATTLVDFGCGSGSLLDSLLDYPTALEKIVGVDISQKSLSRAAKI--IHSKLSKKLDAAVPCTDVKSAVLFDGSITVFD 789 (952)
Q Consensus 712 ~k~krVLDIGCGeG~ll~~LAr~g~~~~qVVGVDISeemLe~Arkr--Lsa~la~~~~~l~Pr~~~~nVtf~qGDa~dLp 789 (952)
.++++|||||||+|..+..+++++ +..+|++||+++++++.|+++ +... ... ....++++++.+|+.+.-
T Consensus 296 ~~~~rVL~IG~G~G~~~~~ll~~~-~v~~v~~VEid~~vi~~ar~~~~l~~~-~~~------~~~dprv~vi~~Da~~~l 367 (521)
T PRK03612 296 ARPRRVLVLGGGDGLALREVLKYP-DVEQVTLVDLDPAMTELARTSPALRAL-NGG------ALDDPRVTVVNDDAFNWL 367 (521)
T ss_pred CCCCeEEEEcCCccHHHHHHHhCC-CcCeEEEEECCHHHHHHHHhCCcchhh-hcc------ccCCCceEEEEChHHHHH
Confidence 357899999999999999998874 347999999999999999873 2110 000 012358999999998742
Q ss_pred -CCCCCccEEEEccccccCChh-H--HHHHHHHHHHccCCC-EEEEEe
Q 002218 790 -SRLHGFDIGTCLEVIEHMEED-E--ASQFGNIVLSSFRPR-ILIVST 832 (952)
Q Consensus 790 -f~d~sFDVVVcieVIEHL~dD-~--l~~L~eeI~RvLKPG-~LIIST 832 (952)
...++||+|++...-.+.+.. . -..|.+.+.+.|||| .+++.+
T Consensus 368 ~~~~~~fDvIi~D~~~~~~~~~~~L~t~ef~~~~~~~L~pgG~lv~~~ 415 (521)
T PRK03612 368 RKLAEKFDVIIVDLPDPSNPALGKLYSVEFYRLLKRRLAPDGLLVVQS 415 (521)
T ss_pred HhCCCCCCEEEEeCCCCCCcchhccchHHHHHHHHHhcCCCeEEEEec
Confidence 234689999996432221110 0 124556799999999 555544
No 154
>PF01170 UPF0020: Putative RNA methylase family UPF0020; InterPro: IPR000241 This domain is probably a methylase. It is associated with the THUMP domain that also occurs with RNA modification domains [].; PDB: 3LDU_A 3LDG_A 3K0B_A 3V8V_B 3V97_A 3TLJ_A 3TM5_B 3TM4_A 3TMA_A.
Probab=98.22 E-value=8.9e-06 Score=83.20 Aligned_cols=136 Identities=19% Similarity=0.166 Sum_probs=89.4
Q ss_pred hhHHHHHHHHHHHhhcCCCCEEEEEcCccchHHHHHhcCCCCCc--------eEEEEeCChHHHHHHHHHHhhhhhcccc
Q 002218 696 PLSKQRVEYALQHIKESCATTLVDFGCGSGSLLDSLLDYPTALE--------KIVGVDISQKSLSRAAKIIHSKLSKKLD 767 (952)
Q Consensus 696 PL~~QR~efVldlL~~~k~krVLDIGCGeG~ll~~LAr~g~~~~--------qVVGVDISeemLe~ArkrLsa~la~~~~ 767 (952)
|+.+.--..++.+....++..|||--||+|.++...+..+.... +++|+|+++++++.|++++...
T Consensus 11 ~L~~~lA~~ll~la~~~~~~~vlDP~CGsGtiliEaa~~~~~~~~~~~~~~~~~~g~Di~~~~v~~a~~N~~~a------ 84 (179)
T PF01170_consen 11 PLRPTLAAALLNLAGWRPGDVVLDPFCGSGTILIEAALMGANIPPLNDINELKIIGSDIDPKAVRGARENLKAA------ 84 (179)
T ss_dssp SS-HHHHHHHHHHTT--TTS-EEETT-TTSHHHHHHHHHHTTTSTTTH-CH--EEEEESSHHHHHHHHHHHHHT------
T ss_pred CCCHHHHHHHHHHhCCCCCCEEeecCCCCCHHHHHHHHHhhCcccccccccccEEecCCCHHHHHHHHHHHHhc------
Confidence 55554445566666666788999999999999976654432112 3899999999999999887532
Q ss_pred cCCCCCCCccEEEEEcCccccCCCCCCccEEEEcccccc-CC-----hhHHHHHHHHHHHccCCCEEEEEecCCchhHHH
Q 002218 768 AAVPCTDVKSAVLFDGSITVFDSRLHGFDIGTCLEVIEH-ME-----EDEASQFGNIVLSSFRPRILIVSTPNYEYNAIL 841 (952)
Q Consensus 768 ~l~Pr~~~~nVtf~qGDa~dLpf~d~sFDVVVcieVIEH-L~-----dD~l~~L~eeI~RvLKPG~LIISTPN~efN~lf 841 (952)
.....+.+.++|+.++++..+.+|+|++.-=.-. +. ..--..|.+++.+++++..+++++.+..+...+
T Consensus 85 -----g~~~~i~~~~~D~~~l~~~~~~~d~IvtnPPyG~r~~~~~~~~~ly~~~~~~~~~~l~~~~v~l~~~~~~~~~~~ 159 (179)
T PF01170_consen 85 -----GVEDYIDFIQWDARELPLPDGSVDAIVTNPPYGRRLGSKKDLEKLYRQFLRELKRVLKPRAVFLTTSNRELEKAL 159 (179)
T ss_dssp -----T-CGGEEEEE--GGGGGGTTSBSCEEEEE--STTSHCHHHHHHHHHHHHHHHHHCHSTTCEEEEEESCCCHHHHH
T ss_pred -----ccCCceEEEecchhhcccccCCCCEEEECcchhhhccCHHHHHHHHHHHHHHHHHHCCCCEEEEEECCHHHHHHh
Confidence 1234689999999999977789999999422111 11 122245567788999998777777777766555
Q ss_pred H
Q 002218 842 Q 842 (952)
Q Consensus 842 ~ 842 (952)
.
T Consensus 160 ~ 160 (179)
T PF01170_consen 160 G 160 (179)
T ss_dssp T
T ss_pred c
Confidence 4
No 155
>PF06080 DUF938: Protein of unknown function (DUF938); InterPro: IPR010342 This family consists of several hypothetical proteins from both prokaryotes and eukaryotes. The function of this family is unknown.
Probab=98.21 E-value=2.2e-05 Score=82.69 Aligned_cols=161 Identities=16% Similarity=0.117 Sum_probs=102.5
Q ss_pred EEEEEcCccchHHHHHhcCCCCCceEEEEeCChHHHHHHHHHHhhhhhcccccCCCCCCCccEEEEEcCccccC--C---
Q 002218 716 TLVDFGCGSGSLLDSLLDYPTALEKIVGVDISQKSLSRAAKIIHSKLSKKLDAAVPCTDVKSAVLFDGSITVFD--S--- 790 (952)
Q Consensus 716 rVLDIGCGeG~ll~~LAr~g~~~~qVVGVDISeemLe~ArkrLsa~la~~~~~l~Pr~~~~nVtf~qGDa~dLp--f--- 790 (952)
+|||||||+|..+.++++.. +...-.--|+++..+...+..+..... ..-...+. -|+...+ .
T Consensus 28 ~vLEiaSGtGqHa~~FA~~l-P~l~WqPSD~~~~~~~sI~a~~~~~~~--------~Nv~~P~~---lDv~~~~w~~~~~ 95 (204)
T PF06080_consen 28 RVLEIASGTGQHAVYFAQAL-PHLTWQPSDPDDNLRPSIRAWIAEAGL--------PNVRPPLA---LDVSAPPWPWELP 95 (204)
T ss_pred eEEEEcCCccHHHHHHHHHC-CCCEEcCCCCChHHHhhHHHHHHhcCC--------cccCCCeE---eecCCCCCccccc
Confidence 69999999999999999887 456777889998887555544332100 01111222 2333322 1
Q ss_pred ---CCCCccEEEEccccccCChhHHHHHHHHHHHccCCC-EEEEEecC-------CchhHHHHhhccCccCCCCcchhhh
Q 002218 791 ---RLHGFDIGTCLEVIEHMEEDEASQFGNIVLSSFRPR-ILIVSTPN-------YEYNAILQKSSSTIQEDDPDEKTQL 859 (952)
Q Consensus 791 ---~d~sFDVVVcieVIEHL~dD~l~~L~eeI~RvLKPG-~LIISTPN-------~efN~lf~~L~~~ta~eYPde~~g~ 859 (952)
....||+|+|+.++|-++-.....+++...++|+|| .+++--|- .+-|..|...
T Consensus 96 ~~~~~~~~D~i~~~N~lHI~p~~~~~~lf~~a~~~L~~gG~L~~YGPF~~~G~~ts~SN~~FD~s--------------- 160 (204)
T PF06080_consen 96 APLSPESFDAIFCINMLHISPWSAVEGLFAGAARLLKPGGLLFLYGPFNRDGKFTSESNAAFDAS--------------- 160 (204)
T ss_pred cccCCCCcceeeehhHHHhcCHHHHHHHHHHHHHhCCCCCEEEEeCCcccCCEeCCcHHHHHHHH---------------
Confidence 245899999999999999888888888999999999 88877663 2234444321
Q ss_pred ccccccCCCCccccCHHHHHHHHHHHHHHcCcEEEEEeecCCCCCCCCccceeeeeec
Q 002218 860 QSCKFRNHDHKFEWTRDQFNCWATELAARHNYSVEFSGVGGSGDREPGFASQIAVFRS 917 (952)
Q Consensus 860 ~~~~fRh~DHkFEWTReEFqsWae~La~q~GYsVefsGVG~~p~ge~G~aTQIAVFrR 917 (952)
..-|++ +|--.++. |+..++.++|+..+ .+-+-|. + -++-||+|
T Consensus 161 --Lr~rdp----~~GiRD~e-~v~~lA~~~GL~l~--~~~~MPA-N----N~~Lvfrk 204 (204)
T PF06080_consen 161 --LRSRDP----EWGIRDIE-DVEALAAAHGLELE--EDIDMPA-N----NLLLVFRK 204 (204)
T ss_pred --HhcCCC----CcCccCHH-HHHHHHHHCCCccC--cccccCC-C----CeEEEEeC
Confidence 222333 24444454 56688999998753 2222232 1 36777775
No 156
>PTZ00338 dimethyladenosine transferase-like protein; Provisional
Probab=98.21 E-value=5.7e-06 Score=91.09 Aligned_cols=90 Identities=16% Similarity=0.291 Sum_probs=69.3
Q ss_pred HHHHHHHhhcCCCCEEEEEcCccchHHHHHhcCCCCCceEEEEeCChHHHHHHHHHHhhhhhcccccCCCCCCCccEEEE
Q 002218 702 VEYALQHIKESCATTLVDFGCGSGSLLDSLLDYPTALEKIVGVDISQKSLSRAAKIIHSKLSKKLDAAVPCTDVKSAVLF 781 (952)
Q Consensus 702 ~efVldlL~~~k~krVLDIGCGeG~ll~~LAr~g~~~~qVVGVDISeemLe~ArkrLsa~la~~~~~l~Pr~~~~nVtf~ 781 (952)
.+.+++.+...++.+|||||||.|.++..+++.+ .+|+|+|+|+.+++.+++++... ....+++++
T Consensus 25 ~~~Iv~~~~~~~~~~VLEIG~G~G~LT~~Ll~~~---~~V~avEiD~~li~~l~~~~~~~-----------~~~~~v~ii 90 (294)
T PTZ00338 25 LDKIVEKAAIKPTDTVLEIGPGTGNLTEKLLQLA---KKVIAIEIDPRMVAELKKRFQNS-----------PLASKLEVI 90 (294)
T ss_pred HHHHHHhcCCCCcCEEEEecCchHHHHHHHHHhC---CcEEEEECCHHHHHHHHHHHHhc-----------CCCCcEEEE
Confidence 3456666666677899999999999999999876 68999999999999998876421 113579999
Q ss_pred EcCccccCCCCCCccEEEEccccccCC
Q 002218 782 DGSITVFDSRLHGFDIGTCLEVIEHME 808 (952)
Q Consensus 782 qGDa~dLpf~d~sFDVVVcieVIEHL~ 808 (952)
++|+.+.+. ..||+|++. .-.++.
T Consensus 91 ~~Dal~~~~--~~~d~VvaN-lPY~Is 114 (294)
T PTZ00338 91 EGDALKTEF--PYFDVCVAN-VPYQIS 114 (294)
T ss_pred ECCHhhhcc--cccCEEEec-CCcccC
Confidence 999987654 468988874 333444
No 157
>PRK11783 rlmL 23S rRNA m(2)G2445 methyltransferase; Provisional
Probab=98.19 E-value=5e-06 Score=101.02 Aligned_cols=107 Identities=13% Similarity=0.043 Sum_probs=74.9
Q ss_pred CCCEEEEEcCccchHHHHHhcCCCCCceEEEEeCChHHHHHHHHHHhhhhhcccccCCCCCCCccEEEEEcCccccC-CC
Q 002218 713 CATTLVDFGCGSGSLLDSLLDYPTALEKIVGVDISQKSLSRAAKIIHSKLSKKLDAAVPCTDVKSAVLFDGSITVFD-SR 791 (952)
Q Consensus 713 k~krVLDIGCGeG~ll~~LAr~g~~~~qVVGVDISeemLe~ArkrLsa~la~~~~~l~Pr~~~~nVtf~qGDa~dLp-f~ 791 (952)
++++|||+|||+|.++..++..|. .+|++||+|+.+++.|++++... + ....+++++++|+.+.. ..
T Consensus 538 ~g~rVLDlf~gtG~~sl~aa~~Ga--~~V~~vD~s~~al~~a~~N~~~n--g--------~~~~~v~~i~~D~~~~l~~~ 605 (702)
T PRK11783 538 KGKDFLNLFAYTGTASVHAALGGA--KSTTTVDMSNTYLEWAERNFALN--G--------LSGRQHRLIQADCLAWLKEA 605 (702)
T ss_pred CCCeEEEcCCCCCHHHHHHHHCCC--CEEEEEeCCHHHHHHHHHHHHHh--C--------CCccceEEEEccHHHHHHHc
Confidence 578999999999999999998763 57999999999999999887521 0 01137999999987642 12
Q ss_pred CCCccEEEEcc---c----cccCC--hhHHHHHHHHHHHccCCC-EEEEE
Q 002218 792 LHGFDIGTCLE---V----IEHME--EDEASQFGNIVLSSFRPR-ILIVS 831 (952)
Q Consensus 792 d~sFDVVVcie---V----IEHL~--dD~l~~L~eeI~RvLKPG-~LIIS 831 (952)
...||+|++.= . .+.+. ......+...+.++|+|| .++++
T Consensus 606 ~~~fDlIilDPP~f~~~~~~~~~~~~~~~y~~l~~~a~~lL~~gG~l~~~ 655 (702)
T PRK11783 606 REQFDLIFIDPPTFSNSKRMEDSFDVQRDHVALIKDAKRLLRPGGTLYFS 655 (702)
T ss_pred CCCcCEEEECCCCCCCCCccchhhhHHHHHHHHHHHHHHHcCCCCEEEEE
Confidence 46899999831 0 00110 011234455688999999 55444
No 158
>PF02390 Methyltransf_4: Putative methyltransferase ; InterPro: IPR003358 This entry represents tRNA (guanine-N-7) methyltransferase (2.1.1.33 from EC), which catalyses the formation of N(7)-methylguanine at position 46 (m7G46) in tRNA. Capping of the pre-mRNA 5' end by addition a monomethylated guanosine cap (m(7)G) is an essential and the earliest modification in the biogenesis of mRNA []. The reaction is catalysed by three enzymes: triphosphatase, guanylyltransferase, and tRNA (guanine-N-7) methyltransferase [, ].; GO: 0008176 tRNA (guanine-N7-)-methyltransferase activity, 0006400 tRNA modification; PDB: 3DXZ_A 3DXY_A 3DXX_A 3CKK_A 3P2I_B 3P2K_D 3P2E_A 3MTE_B 3PB3_B 1YZH_B ....
Probab=98.16 E-value=5.8e-06 Score=85.83 Aligned_cols=114 Identities=17% Similarity=0.244 Sum_probs=81.5
Q ss_pred CEEEEEcCccchHHHHHhcCCCCCceEEEEeCChHHHHHHHHHHhhhhhcccccCCCCCCCccEEEEEcCcccc-C--CC
Q 002218 715 TTLVDFGCGSGSLLDSLLDYPTALEKIVGVDISQKSLSRAAKIIHSKLSKKLDAAVPCTDVKSAVLFDGSITVF-D--SR 791 (952)
Q Consensus 715 krVLDIGCGeG~ll~~LAr~g~~~~qVVGVDISeemLe~ArkrLsa~la~~~~~l~Pr~~~~nVtf~qGDa~dL-p--f~ 791 (952)
..+||||||.|.++..+|+.. +...++|||+....+..|.+++.. .+..|+.++++|+..+ . +.
T Consensus 19 ~l~lEIG~G~G~~l~~~A~~~-Pd~n~iGiE~~~~~v~~a~~~~~~------------~~l~Nv~~~~~da~~~l~~~~~ 85 (195)
T PF02390_consen 19 PLILEIGCGKGEFLIELAKRN-PDINFIGIEIRKKRVAKALRKAEK------------RGLKNVRFLRGDARELLRRLFP 85 (195)
T ss_dssp EEEEEET-TTSHHHHHHHHHS-TTSEEEEEES-HHHHHHHHHHHHH------------HTTSSEEEEES-CTTHHHHHST
T ss_pred CeEEEecCCCCHHHHHHHHHC-CCCCEEEEecchHHHHHHHHHHHh------------hcccceEEEEccHHHHHhhccc
Confidence 389999999999999999876 579999999999999999887653 2567999999999872 2 34
Q ss_pred CCCccEEEEccccccCChh------HHHHHHHHHHHccCCC-EEEEEecCCchhHHH
Q 002218 792 LHGFDIGTCLEVIEHMEED------EASQFGNIVLSSFRPR-ILIVSTPNYEYNAIL 841 (952)
Q Consensus 792 d~sFDVVVcieVIEHL~dD------~l~~L~eeI~RvLKPG-~LIISTPN~efN~lf 841 (952)
++++|.|...+-=-|.... ....|.+.+.++|+|| .+.+.|-+.+|....
T Consensus 86 ~~~v~~i~i~FPDPWpK~rH~krRl~~~~fl~~~~~~L~~gG~l~~~TD~~~y~~~~ 142 (195)
T PF02390_consen 86 PGSVDRIYINFPDPWPKKRHHKRRLVNPEFLELLARVLKPGGELYFATDVEEYAEWM 142 (195)
T ss_dssp TTSEEEEEEES-----SGGGGGGSTTSHHHHHHHHHHEEEEEEEEEEES-HHHHHHH
T ss_pred CCchheEEEeCCCCCcccchhhhhcCCchHHHHHHHHcCCCCEEEEEeCCHHHHHHH
Confidence 6788888765432221100 0136677899999999 888888887766543
No 159
>KOG3420 consensus Predicted RNA methylase [Translation, ribosomal structure and biogenesis]
Probab=98.15 E-value=3.4e-06 Score=84.60 Aligned_cols=94 Identities=18% Similarity=0.197 Sum_probs=76.7
Q ss_pred CchhHHHHHHHHHHHhhcCCCCEEEEEcCccchHHHHHhcCCCCCceEEEEeCChHHHHHHHHHHhhhhhcccccCCCCC
Q 002218 694 SPPLSKQRVEYALQHIKESCATTLVDFGCGSGSLLDSLLDYPTALEKIVGVDISQKSLSRAAKIIHSKLSKKLDAAVPCT 773 (952)
Q Consensus 694 ~PPL~~QR~efVldlL~~~k~krVLDIGCGeG~ll~~LAr~g~~~~qVVGVDISeemLe~ArkrLsa~la~~~~~l~Pr~ 773 (952)
.|.+...+...+-+......+++++|+|||.|-+....+..++ ..|+|+||++++|+.+.++..+.
T Consensus 29 ~p~iAasM~~~Ih~TygdiEgkkl~DLgcgcGmLs~a~sm~~~--e~vlGfDIdpeALEIf~rNaeEf------------ 94 (185)
T KOG3420|consen 29 RPHIAASMLYTIHNTYGDIEGKKLKDLGCGCGMLSIAFSMPKN--ESVLGFDIDPEALEIFTRNAEEF------------ 94 (185)
T ss_pred cHHHHHHHHHHHHhhhccccCcchhhhcCchhhhHHHhhcCCC--ceEEeeecCHHHHHHHhhchHHh------------
Confidence 3456666777777777888999999999999999977766553 78999999999999998776432
Q ss_pred CCccEEEEEcCccccCCCCCCccEEEEcc
Q 002218 774 DVKSAVLFDGSITVFDSRLHGFDIGTCLE 802 (952)
Q Consensus 774 ~~~nVtf~qGDa~dLpf~d~sFDVVVcie 802 (952)
..++++.++|+.++.+..+.||.++..-
T Consensus 95 -EvqidlLqcdildle~~~g~fDtaviNp 122 (185)
T KOG3420|consen 95 -EVQIDLLQCDILDLELKGGIFDTAVINP 122 (185)
T ss_pred -hhhhheeeeeccchhccCCeEeeEEecC
Confidence 2367999999999988888999998753
No 160
>PLN02672 methionine S-methyltransferase
Probab=98.12 E-value=1.3e-05 Score=100.71 Aligned_cols=86 Identities=14% Similarity=0.127 Sum_probs=60.4
Q ss_pred CCEEEEEcCccchHHHHHhcCCCCCceEEEEeCChHHHHHHHHHHhhhhhc-cc--ccC-CCCCCCccEEEEEcCccccC
Q 002218 714 ATTLVDFGCGSGSLLDSLLDYPTALEKIVGVDISQKSLSRAAKIIHSKLSK-KL--DAA-VPCTDVKSAVLFDGSITVFD 789 (952)
Q Consensus 714 ~krVLDIGCGeG~ll~~LAr~g~~~~qVVGVDISeemLe~ArkrLsa~la~-~~--~~l-~Pr~~~~nVtf~qGDa~dLp 789 (952)
+.+|||+|||+|.++..+++.. +..+|+|+|+|+++++.|++++....-+ .. ... .......+++++++|+.+..
T Consensus 119 ~~~VLDlG~GSG~Iai~La~~~-~~~~v~avDis~~Al~~A~~Na~~n~l~~~~~~~~~~~~~~l~~rV~f~~sDl~~~~ 197 (1082)
T PLN02672 119 DKTVAELGCGNGWISIAIAEKW-LPSKVYGLDINPRAVKVAWINLYLNALDDDGLPVYDGEGKTLLDRVEFYESDLLGYC 197 (1082)
T ss_pred CCEEEEEecchHHHHHHHHHHC-CCCEEEEEECCHHHHHHHHHHHHHcCcccccccccccccccccccEEEEECchhhhc
Confidence 4689999999999999999876 3469999999999999999887531100 00 000 00012247999999997654
Q ss_pred CC-CCCccEEEE
Q 002218 790 SR-LHGFDIGTC 800 (952)
Q Consensus 790 f~-d~sFDVVVc 800 (952)
.. ...||+||+
T Consensus 198 ~~~~~~fDlIVS 209 (1082)
T PLN02672 198 RDNNIELDRIVG 209 (1082)
T ss_pred cccCCceEEEEE
Confidence 22 236999999
No 161
>KOG1499 consensus Protein arginine N-methyltransferase PRMT1 and related enzymes [Posttranslational modification, protein turnover, chaperones; Transcription; Signal transduction mechanisms]
Probab=98.10 E-value=1.4e-05 Score=89.32 Aligned_cols=109 Identities=17% Similarity=0.108 Sum_probs=77.0
Q ss_pred cCCCCEEEEEcCccchHHHHHhcCCCCCceEEEEeCChHHHHHHHHHHhhhhhcccccCCCCCCCccEEEEEcCccccCC
Q 002218 711 ESCATTLVDFGCGSGSLLDSLLDYPTALEKIVGVDISQKSLSRAAKIIHSKLSKKLDAAVPCTDVKSAVLFDGSITVFDS 790 (952)
Q Consensus 711 ~~k~krVLDIGCGeG~ll~~LAr~g~~~~qVVGVDISeemLe~ArkrLsa~la~~~~~l~Pr~~~~nVtf~qGDa~dLpf 790 (952)
..+++.|||+|||+|.++..-|+.|. .+|+|||.|.-+ +.|.+.+... +....|++++|.+++...
T Consensus 58 lf~dK~VlDVGcGtGILS~F~akAGA--~~V~aVe~S~ia-~~a~~iv~~N-----------~~~~ii~vi~gkvEdi~L 123 (346)
T KOG1499|consen 58 LFKDKTVLDVGCGTGILSMFAAKAGA--RKVYAVEASSIA-DFARKIVKDN-----------GLEDVITVIKGKVEDIEL 123 (346)
T ss_pred hcCCCEEEEcCCCccHHHHHHHHhCc--ceEEEEechHHH-HHHHHHHHhc-----------CccceEEEeecceEEEec
Confidence 35789999999999999999999985 899999976655 8887765421 122358999999999876
Q ss_pred CCCCccEEEEccccccCC-hhHHHHHHHHHHHccCCCEEEEEec
Q 002218 791 RLHGFDIGTCLEVIEHME-EDEASQFGNIVLSSFRPRILIVSTP 833 (952)
Q Consensus 791 ~d~sFDVVVcieVIEHL~-dD~l~~L~eeI~RvLKPG~LIISTP 833 (952)
+..+.|+|++-++=..+- +.-+....-.=-+.|+||.+++++-
T Consensus 124 P~eKVDiIvSEWMGy~Ll~EsMldsVl~ARdkwL~~~G~i~P~~ 167 (346)
T KOG1499|consen 124 PVEKVDIIVSEWMGYFLLYESMLDSVLYARDKWLKEGGLIYPDR 167 (346)
T ss_pred CccceeEEeehhhhHHHHHhhhhhhhhhhhhhccCCCceEcccc
Confidence 678999999955433322 1111111111257899997766544
No 162
>TIGR00478 tly hemolysin TlyA family protein. Hemolysins are exotoxins that attack blood cell membranes and cause cell rupture, often by forming a pore in the membrane. At least two members of this protein family have been characterized indirectly as pore-forming hemolysins, one from the spirochete Serpula (Treponema) hyodysenteriae and one from Mycobacterium tuberculosis. However, homology domains in this protein suggest methyltransferase activity (pfam01728) and RNA-binding activity (pfam01479).
Probab=98.06 E-value=2.4e-05 Score=83.48 Aligned_cols=102 Identities=14% Similarity=0.217 Sum_probs=63.1
Q ss_pred CCCCEEEEEcCccchHHHHHhcCCCCCceEEEEeCChHHHHHHHHHHhhhhhcccccCCCCCCCccEEEEEcCccccCCC
Q 002218 712 SCATTLVDFGCGSGSLLDSLLDYPTALEKIVGVDISQKSLSRAAKIIHSKLSKKLDAAVPCTDVKSAVLFDGSITVFDSR 791 (952)
Q Consensus 712 ~k~krVLDIGCGeG~ll~~LAr~g~~~~qVVGVDISeemLe~ArkrLsa~la~~~~~l~Pr~~~~nVtf~qGDa~dLpf~ 791 (952)
.++++|||+|||+|.|+..+++.|. .+|+|||++..|+....+. .+.... .+..+++ ..+..+.+..
T Consensus 74 ~~~~~vlDiG~gtG~~t~~l~~~ga--~~v~avD~~~~~l~~~l~~-~~~v~~--------~~~~ni~--~~~~~~~~~d 140 (228)
T TIGR00478 74 VKNKIVLDVGSSTGGFTDCALQKGA--KEVYGVDVGYNQLAEKLRQ-DERVKV--------LERTNIR--YVTPADIFPD 140 (228)
T ss_pred CCCCEEEEcccCCCHHHHHHHHcCC--CEEEEEeCCHHHHHHHHhc-CCCeeE--------eecCCcc--cCCHhHcCCC
Confidence 3677999999999999999999863 7899999999988763221 100000 0111222 1222233323
Q ss_pred CCCccEEEEccccccCChhHHHHHHHHHHHccCCC-EEEEEecCCc
Q 002218 792 LHGFDIGTCLEVIEHMEEDEASQFGNIVLSSFRPR-ILIVSTPNYE 836 (952)
Q Consensus 792 d~sFDVVVcieVIEHL~dD~l~~L~eeI~RvLKPG-~LIISTPN~e 836 (952)
...||+++++..+ ++..+.+.|+|| .+++..|.++
T Consensus 141 ~~~~DvsfiS~~~----------~l~~i~~~l~~~~~~~L~KPqFE 176 (228)
T TIGR00478 141 FATFDVSFISLIS----------ILPELDLLLNPNDLTLLFKPQFE 176 (228)
T ss_pred ceeeeEEEeehHh----------HHHHHHHHhCcCeEEEEcChHhh
Confidence 3467877765442 123588888888 6666666654
No 163
>PF10294 Methyltransf_16: Putative methyltransferase; InterPro: IPR019410 There are a number of unidentified genes that have a high probability of coding for methyltransferases. They make up approximately 0.6-1.6% of the genes in the yeast, human, mouse, Drosophila melanogaster, Caenorhabditis elegans, Arabidopsis thaliana, and Escherichia coli genomes []. This entry represents putative nicotinamide N-methyltransferases involved in rDNA silencing and in lifespan determination. ; PDB: 3BZB_A.
Probab=98.03 E-value=4.9e-05 Score=77.28 Aligned_cols=127 Identities=13% Similarity=0.061 Sum_probs=75.8
Q ss_pred chhHHHHHHHHHHH------hhcCCCCEEEEEcCccchHHHHHhcCCCCCceEEEEeCChHHHHHHHHHHhhhhhccccc
Q 002218 695 PPLSKQRVEYALQH------IKESCATTLVDFGCGSGSLLDSLLDYPTALEKIVGVDISQKSLSRAAKIIHSKLSKKLDA 768 (952)
Q Consensus 695 PPL~~QR~efVldl------L~~~k~krVLDIGCGeG~ll~~LAr~g~~~~qVVGVDISeemLe~ArkrLsa~la~~~~~ 768 (952)
+|-..-..+|+.+. ....++++|||||||.|..+..++... ...+|+..|.++ .++..+.++.....
T Consensus 21 W~aa~~La~~l~~~~~~~~~~~~~~~~~VLELGaG~Gl~gi~~a~~~-~~~~Vv~TD~~~-~l~~l~~Ni~~N~~----- 93 (173)
T PF10294_consen 21 WPAALVLARYLLSHSESEFNPELFRGKRVLELGAGTGLPGIAAAKLF-GAARVVLTDYNE-VLELLRRNIELNGS----- 93 (173)
T ss_dssp --HHHHHHHHHHH-------GGGTTTSEEEETT-TTSHHHHHHHHT--T-SEEEEEE-S--HHHHHHHHHHTT-------
T ss_pred echHHHHHHHHHHhcccccchhhcCCceEEEECCccchhHHHHHhcc-CCceEEEeccch-hhHHHHHHHHhccc-----
Confidence 34444445566553 334578999999999999999998882 137999999998 88888877653210
Q ss_pred CCCCCCCccEEEEEcCccccC----CCCCCccEEEEccccccCChhHHHHHHHHHHHccCCC-EEEEEecC
Q 002218 769 AVPCTDVKSAVLFDGSITVFD----SRLHGFDIGTCLEVIEHMEEDEASQFGNIVLSSFRPR-ILIVSTPN 834 (952)
Q Consensus 769 l~Pr~~~~nVtf~qGDa~dLp----f~d~sFDVVVcieVIEHL~dD~l~~L~eeI~RvLKPG-~LIISTPN 834 (952)
....++.+...+..+-. .....||+|++.+++..- +....|.+.+.++|+|+ .+++..+.
T Consensus 94 ----~~~~~v~v~~L~Wg~~~~~~~~~~~~~D~IlasDv~Y~~--~~~~~L~~tl~~ll~~~~~vl~~~~~ 158 (173)
T PF10294_consen 94 ----LLDGRVSVRPLDWGDELDSDLLEPHSFDVILASDVLYDE--ELFEPLVRTLKRLLKPNGKVLLAYKR 158 (173)
T ss_dssp ----------EEEE--TTS-HHHHHHS-SSBSEEEEES--S-G--GGHHHHHHHHHHHBTT-TTEEEEEE-
T ss_pred ----cccccccCcEEEecCcccccccccccCCEEEEecccchH--HHHHHHHHHHHHHhCCCCEEEEEeCE
Confidence 12236677776664411 134689999999999863 44567777899999998 66665553
No 164
>TIGR02143 trmA_only tRNA (uracil-5-)-methyltransferase. This family consists exclusively of proteins believed to act as tRNA (uracil-5-)-methyltransferase. All members of far are proteobacterial. The seed alignment was taken directly from pfam05958 in Pfam 12.0, but higher cutoffs are used to select only functionally equivalent proteins. Homologous proteins excluded by the higher cutoff scores of this model include other uracil methyltransferases, such as RumA, active on rRNA.
Probab=98.01 E-value=1.8e-05 Score=89.03 Aligned_cols=77 Identities=18% Similarity=0.317 Sum_probs=60.8
Q ss_pred hhHHHHHHHHHHHhhcCCCCEEEEEcCccchHHHHHhcCCCCCceEEEEeCChHHHHHHHHHHhhhhhcccccCCCCCCC
Q 002218 696 PLSKQRVEYALQHIKESCATTLVDFGCGSGSLLDSLLDYPTALEKIVGVDISQKSLSRAAKIIHSKLSKKLDAAVPCTDV 775 (952)
Q Consensus 696 PL~~QR~efVldlL~~~k~krVLDIGCGeG~ll~~LAr~g~~~~qVVGVDISeemLe~ArkrLsa~la~~~~~l~Pr~~~ 775 (952)
......++.+.+.+...+ .+|||+|||+|.++..|++.. .+|+|||+++++++.|++++.. .+.
T Consensus 181 ~~~~~l~~~v~~~~~~~~-~~vlDl~~G~G~~sl~la~~~---~~v~~vE~~~~av~~a~~n~~~------------~~~ 244 (353)
T TIGR02143 181 AVNIKMLEWACEVTQGSK-GDLLELYCGNGNFSLALAQNF---RRVLATEIAKPSVNAAQYNIAA------------NNI 244 (353)
T ss_pred HHHHHHHHHHHHHhhcCC-CcEEEEeccccHHHHHHHHhC---CEEEEEECCHHHHHHHHHHHHH------------cCC
Confidence 445666677777665322 479999999999999999876 6899999999999999987642 234
Q ss_pred ccEEEEEcCcccc
Q 002218 776 KSAVLFDGSITVF 788 (952)
Q Consensus 776 ~nVtf~qGDa~dL 788 (952)
.+++++.+|+.++
T Consensus 245 ~~v~~~~~d~~~~ 257 (353)
T TIGR02143 245 DNVQIIRMSAEEF 257 (353)
T ss_pred CcEEEEEcCHHHH
Confidence 5799999999764
No 165
>PLN02589 caffeoyl-CoA O-methyltransferase
Probab=98.00 E-value=0.0001 Score=79.59 Aligned_cols=117 Identities=12% Similarity=0.073 Sum_probs=85.3
Q ss_pred HHHHHHHHHHhhcCCCCEEEEEcCccchHHHHHhcCCCCCceEEEEeCChHHHHHHHHHHhhhhhcccccCCCCCCCccE
Q 002218 699 KQRVEYALQHIKESCATTLVDFGCGSGSLLDSLLDYPTALEKIVGVDISQKSLSRAAKIIHSKLSKKLDAAVPCTDVKSA 778 (952)
Q Consensus 699 ~QR~efVldlL~~~k~krVLDIGCGeG~ll~~LAr~g~~~~qVVGVDISeemLe~ArkrLsa~la~~~~~l~Pr~~~~nV 778 (952)
+..-+++..+++..++++|||||++.|+-+.+|++.-++..+|+.+|++++..+.|++.+... +...+|
T Consensus 65 ~~~g~lL~~l~~~~~ak~iLEiGT~~GySal~la~al~~~g~v~tiE~~~~~~~~Ar~~~~~a-----------g~~~~I 133 (247)
T PLN02589 65 ADEGQFLNMLLKLINAKNTMEIGVYTGYSLLATALALPEDGKILAMDINRENYELGLPVIQKA-----------GVAHKI 133 (247)
T ss_pred HHHHHHHHHHHHHhCCCEEEEEeChhhHHHHHHHhhCCCCCEEEEEeCCHHHHHHHHHHHHHC-----------CCCCce
Confidence 344556666667778999999999999999999875434579999999999999999887531 224589
Q ss_pred EEEEcCccccCCC-------CCCccEEEEccccccCChhHHHHHHHHHHHccCCCEEEEE
Q 002218 779 VLFDGSITVFDSR-------LHGFDIGTCLEVIEHMEEDEASQFGNIVLSSFRPRILIVS 831 (952)
Q Consensus 779 tf~qGDa~dLpf~-------d~sFDVVVcieVIEHL~dD~l~~L~eeI~RvLKPG~LIIS 831 (952)
+++.|++.+.-.. .++||+|+. .+-...- ..+.+.+.+.|+||.+|+.
T Consensus 134 ~~~~G~a~e~L~~l~~~~~~~~~fD~iFi----DadK~~Y-~~y~~~~l~ll~~GGviv~ 188 (247)
T PLN02589 134 DFREGPALPVLDQMIEDGKYHGTFDFIFV----DADKDNY-INYHKRLIDLVKVGGVIGY 188 (247)
T ss_pred EEEeccHHHHHHHHHhccccCCcccEEEe----cCCHHHh-HHHHHHHHHhcCCCeEEEE
Confidence 9999998774221 258999965 3434233 3344567899999955554
No 166
>COG1041 Predicted DNA modification methylase [DNA replication, recombination, and repair]
Probab=97.99 E-value=4.2e-05 Score=85.88 Aligned_cols=128 Identities=14% Similarity=0.182 Sum_probs=93.4
Q ss_pred hcCCchhHHHHH-HHHHHHhhcCCCCEEEEEcCccchHHHHHhcCCCCCceEEEEeCChHHHHHHHHHHhhhhhcccccC
Q 002218 691 ALFSPPLSKQRV-EYALQHIKESCATTLVDFGCGSGSLLDSLLDYPTALEKIVGVDISQKSLSRAAKIIHSKLSKKLDAA 769 (952)
Q Consensus 691 ~~F~PPL~~QR~-efVldlL~~~k~krVLDIGCGeG~ll~~LAr~g~~~~qVVGVDISeemLe~ArkrLsa~la~~~~~l 769 (952)
++|.|.--+-|+ ..++++....++..|||==||||.++....-.| .+++|.|++..|++-|+.++...
T Consensus 174 Pf~~p~s~~P~lAR~mVNLa~v~~G~~vlDPFcGTGgiLiEagl~G---~~viG~Did~~mv~gak~Nl~~y-------- 242 (347)
T COG1041 174 PFFRPGSMDPRLARAMVNLARVKRGELVLDPFCGTGGILIEAGLMG---ARVIGSDIDERMVRGAKINLEYY-------- 242 (347)
T ss_pred CccCcCCcCHHHHHHHHHHhccccCCEeecCcCCccHHHHhhhhcC---ceEeecchHHHHHhhhhhhhhhh--------
Confidence 455553223333 345566666788899999999999999888888 89999999999999999887632
Q ss_pred CCCCCCccEEEEEc-CccccCCCCCCccEEEEc------cccccCC-hhHHHHHHHHHHHccCCC-EEEEEec
Q 002218 770 VPCTDVKSAVLFDG-SITVFDSRLHGFDIGTCL------EVIEHME-EDEASQFGNIVLSSFRPR-ILIVSTP 833 (952)
Q Consensus 770 ~Pr~~~~nVtf~qG-Da~dLpf~d~sFDVVVci------eVIEHL~-dD~l~~L~eeI~RvLKPG-~LIISTP 833 (952)
+.....++.+ |+..+|++...||+|++- ..+.-.. ++-...+.+.+.++|++| .+++.+|
T Consensus 243 ----~i~~~~~~~~~Da~~lpl~~~~vdaIatDPPYGrst~~~~~~l~~Ly~~~le~~~evLk~gG~~vf~~p 311 (347)
T COG1041 243 ----GIEDYPVLKVLDATNLPLRDNSVDAIATDPPYGRSTKIKGEGLDELYEEALESASEVLKPGGRIVFAAP 311 (347)
T ss_pred ----CcCceeEEEecccccCCCCCCccceEEecCCCCcccccccccHHHHHHHHHHHHHHHhhcCcEEEEecC
Confidence 2345556666 999999888889999981 1111111 123355567799999998 8888888
No 167
>PF08704 GCD14: tRNA methyltransferase complex GCD14 subunit; InterPro: IPR014816 GCD14 is a subunit of the tRNA methyltransferase complex and is required for 1-methyladenosine modification and maturation of initiator methionyl-tRNA []. ; GO: 0016429 tRNA (adenine-N1-)-methyltransferase activity, 0030488 tRNA methylation; PDB: 2YVL_C 1YB2_A 2B25_B 1O54_A 2PWY_B 1I9G_A 3LGA_B 3LHD_C 3MB5_A.
Probab=97.98 E-value=4.3e-05 Score=82.58 Aligned_cols=123 Identities=14% Similarity=0.160 Sum_probs=88.2
Q ss_pred hhHHHHHHHHHHHhhcCCCCEEEEEcCccchHHHHHhcCCCCCceEEEEeCChHHHHHHHHHHhhhhhcccccCCCCCCC
Q 002218 696 PLSKQRVEYALQHIKESCATTLVDFGCGSGSLLDSLLDYPTALEKIVGVDISQKSLSRAAKIIHSKLSKKLDAAVPCTDV 775 (952)
Q Consensus 696 PL~~QR~efVldlL~~~k~krVLDIGCGeG~ll~~LAr~g~~~~qVVGVDISeemLe~ArkrLsa~la~~~~~l~Pr~~~ 775 (952)
-+|+.-..+|+..+...++.+|||.|.|+|.++..|++..++..+|+..|+.++..+.|++++... +..
T Consensus 23 IiYpkD~~~I~~~l~i~pG~~VlEaGtGSG~lt~~l~r~v~p~G~v~t~E~~~~~~~~A~~n~~~~-----------gl~ 91 (247)
T PF08704_consen 23 IIYPKDISYILMRLDIRPGSRVLEAGTGSGSLTHALARAVGPTGHVYTYEFREDRAEKARKNFERH-----------GLD 91 (247)
T ss_dssp ---HHHHHHHHHHTT--TT-EEEEE--TTSHHHHHHHHHHTTTSEEEEEESSHHHHHHHHHHHHHT-----------TCC
T ss_pred eeeCchHHHHHHHcCCCCCCEEEEecCCcHHHHHHHHHHhCCCeEEEccccCHHHHHHHHHHHHHc-----------CCC
Confidence 567777788999999999999999999999999999976556689999999999999999988642 233
Q ss_pred ccEEEEEcCccccCCC---CCCccEEEEccccccCChhHHHHHHHHHHHcc-CCC-EEEEEecCCc
Q 002218 776 KSAVLFDGSITVFDSR---LHGFDIGTCLEVIEHMEEDEASQFGNIVLSSF-RPR-ILIVSTPNYE 836 (952)
Q Consensus 776 ~nVtf~qGDa~dLpf~---d~sFDVVVcieVIEHL~dD~l~~L~eeI~RvL-KPG-~LIISTPN~e 836 (952)
.+|++.++|+.+--+. ...+|+|+. -|+ ++...+. .+.+.| +|| .+.+-.|+.+
T Consensus 92 ~~v~~~~~Dv~~~g~~~~~~~~~DavfL-----Dlp-~Pw~~i~-~~~~~L~~~gG~i~~fsP~ie 150 (247)
T PF08704_consen 92 DNVTVHHRDVCEEGFDEELESDFDAVFL-----DLP-DPWEAIP-HAKRALKKPGGRICCFSPCIE 150 (247)
T ss_dssp TTEEEEES-GGCG--STT-TTSEEEEEE-----ESS-SGGGGHH-HHHHHE-EEEEEEEEEESSHH
T ss_pred CCceeEecceecccccccccCcccEEEE-----eCC-CHHHHHH-HHHHHHhcCCceEEEECCCHH
Confidence 5899999999653332 367999865 344 3334444 588999 898 7888888754
No 168
>PF05219 DREV: DREV methyltransferase; InterPro: IPR007884 This family contains DREV protein homologues from several eukaryotes. The function of this protein is unknown []. However, these proteins appear to be related to other methyltransferases.
Probab=97.98 E-value=6e-05 Score=81.85 Aligned_cols=93 Identities=19% Similarity=0.362 Sum_probs=70.2
Q ss_pred CCCEEEEEcCccchHHHHHhcCCCCCceEEEEeCChHHHHHHHHHHhhhhhcccccCCCCCCCccEEEEEcCccccCCCC
Q 002218 713 CATTLVDFGCGSGSLLDSLLDYPTALEKIVGVDISQKSLSRAAKIIHSKLSKKLDAAVPCTDVKSAVLFDGSITVFDSRL 792 (952)
Q Consensus 713 k~krVLDIGCGeG~ll~~LAr~g~~~~qVVGVDISeemLe~ArkrLsa~la~~~~~l~Pr~~~~nVtf~qGDa~dLpf~d 792 (952)
+..++||||.|.|..+..|+... .+|++.++|..|..+-+++ ..+++ +..++...+
T Consensus 94 ~~~~lLDlGAGdG~VT~~l~~~f---~~v~aTE~S~~Mr~rL~~k-------------------g~~vl--~~~~w~~~~ 149 (265)
T PF05219_consen 94 KDKSLLDLGAGDGEVTERLAPLF---KEVYATEASPPMRWRLSKK-------------------GFTVL--DIDDWQQTD 149 (265)
T ss_pred cCCceEEecCCCcHHHHHHHhhc---ceEEeecCCHHHHHHHHhC-------------------CCeEE--ehhhhhccC
Confidence 45789999999999999999877 7899999999997665442 12222 222333345
Q ss_pred CCccEEEEccccccCChhHHHHHHHHHHHccCCC-EEEEE
Q 002218 793 HGFDIGTCLEVIEHMEEDEASQFGNIVLSSFRPR-ILIVS 831 (952)
Q Consensus 793 ~sFDVVVcieVIEHL~dD~l~~L~eeI~RvLKPG-~LIIS 831 (952)
..||+|.|..++..-. ++...+. .|.+.|+|+ .+|+.
T Consensus 150 ~~fDvIscLNvLDRc~-~P~~LL~-~i~~~l~p~G~lilA 187 (265)
T PF05219_consen 150 FKFDVISCLNVLDRCD-RPLTLLR-DIRRALKPNGRLILA 187 (265)
T ss_pred CceEEEeehhhhhccC-CHHHHHH-HHHHHhCCCCEEEEE
Confidence 6899999999999888 5555654 699999997 55553
No 169
>PRK10611 chemotaxis methyltransferase CheR; Provisional
Probab=97.97 E-value=3e-05 Score=85.39 Aligned_cols=118 Identities=14% Similarity=0.082 Sum_probs=80.2
Q ss_pred CCCEEEEEcCccchHHHH----HhcCC---CCCceEEEEeCChHHHHHHHHHHhhh--hhcc-----cccCCC----C--
Q 002218 713 CATTLVDFGCGSGSLLDS----LLDYP---TALEKIVGVDISQKSLSRAAKIIHSK--LSKK-----LDAAVP----C-- 772 (952)
Q Consensus 713 k~krVLDIGCGeG~ll~~----LAr~g---~~~~qVVGVDISeemLe~ArkrLsa~--la~~-----~~~l~P----r-- 772 (952)
+.-+|+..||++|.=... |.+.. ....+|+|+|||+.+|+.|++-.-.. +... ..+-.+ .
T Consensus 115 ~~irIWSAgCStGEEpYSlAmll~e~~~~~~~~~~I~atDIs~~aL~~Ar~G~Y~~~~~r~~p~~~~~ryF~~~~~~~~~ 194 (287)
T PRK10611 115 GEYRVWSAAASTGEEPYSIAMTLADTLGTAPGRWKVFASDIDTEVLEKARSGIYRQEELKTLSPQQLQRYFMRGTGPHEG 194 (287)
T ss_pred CCEEEEEccccCCHHHHHHHHHHHHhhcccCCCcEEEEEECCHHHHHHHHhCCCCHHHHhcCCHHHHHHHcccccCCCCc
Confidence 346999999999974432 22321 11368999999999999998542110 0000 000000 0
Q ss_pred ------CCCccEEEEEcCccccCCC-CCCccEEEEccccccCChhHHHHHHHHHHHccCCC-EEEE
Q 002218 773 ------TDVKSAVLFDGSITVFDSR-LHGFDIGTCLEVIEHMEEDEASQFGNIVLSSFRPR-ILIV 830 (952)
Q Consensus 773 ------~~~~nVtf~qGDa~dLpf~-d~sFDVVVcieVIEHL~dD~l~~L~eeI~RvLKPG-~LII 830 (952)
.--..|+|.+.|+.+.+++ .+.||+|+|..|+.|+.++....+.+.+.+.|+|| .+++
T Consensus 195 ~~~v~~~lr~~V~F~~~NL~~~~~~~~~~fD~I~cRNvliyF~~~~~~~vl~~l~~~L~pgG~L~l 260 (287)
T PRK10611 195 LVRVRQELANYVDFQQLNLLAKQWAVPGPFDAIFCRNVMIYFDKTTQERILRRFVPLLKPDGLLFA 260 (287)
T ss_pred eEEEChHHHccCEEEcccCCCCCCccCCCcceeeHhhHHhcCCHHHHHHHHHHHHHHhCCCcEEEE
Confidence 0113689999999885543 57899999999999999887788888999999999 4444
No 170
>COG4122 Predicted O-methyltransferase [General function prediction only]
Probab=97.97 E-value=6e-05 Score=80.20 Aligned_cols=117 Identities=13% Similarity=0.043 Sum_probs=88.2
Q ss_pred HHHHHHHHHHhhcCCCCEEEEEcCccchHHHHHhcCCCCCceEEEEeCChHHHHHHHHHHhhhhhcccccCCCCCCCccE
Q 002218 699 KQRVEYALQHIKESCATTLVDFGCGSGSLLDSLLDYPTALEKIVGVDISQKSLSRAAKIIHSKLSKKLDAAVPCTDVKSA 778 (952)
Q Consensus 699 ~QR~efVldlL~~~k~krVLDIGCGeG~ll~~LAr~g~~~~qVVGVDISeemLe~ArkrLsa~la~~~~~l~Pr~~~~nV 778 (952)
+.--+++.-++...++++|||||.+.|+-+.+|+..-+...+++.+|+++++.+.|++++... +-..+|
T Consensus 45 ~e~g~~L~~L~~~~~~k~iLEiGT~~GySal~mA~~l~~~g~l~tiE~~~e~~~~A~~n~~~a-----------g~~~~i 113 (219)
T COG4122 45 PETGALLRLLARLSGPKRILEIGTAIGYSALWMALALPDDGRLTTIERDEERAEIARENLAEA-----------GVDDRI 113 (219)
T ss_pred hhHHHHHHHHHHhcCCceEEEeecccCHHHHHHHhhCCCCCeEEEEeCCHHHHHHHHHHHHHc-----------CCcceE
Confidence 555567777777779999999999999999999987644689999999999999999988642 222358
Q ss_pred EEEE-cCccccCC--CCCCccEEEEccccccCChhHHHHHHHHHHHccCCCEEEEE
Q 002218 779 VLFD-GSITVFDS--RLHGFDIGTCLEVIEHMEEDEASQFGNIVLSSFRPRILIVS 831 (952)
Q Consensus 779 tf~q-GDa~dLpf--~d~sFDVVVcieVIEHL~dD~l~~L~eeI~RvLKPG~LIIS 831 (952)
+++. ||+.+.-. ..++||+|+. .|=. ..-..+.+.+.++|+||.+|+.
T Consensus 114 ~~~~~gdal~~l~~~~~~~fDliFI----DadK-~~yp~~le~~~~lLr~GGliv~ 164 (219)
T COG4122 114 ELLLGGDALDVLSRLLDGSFDLVFI----DADK-ADYPEYLERALPLLRPGGLIVA 164 (219)
T ss_pred EEEecCcHHHHHHhccCCCccEEEE----eCCh-hhCHHHHHHHHHHhCCCcEEEE
Confidence 8888 58766432 3689999954 4444 2334555679999999966554
No 171
>COG0500 SmtA SAM-dependent methyltransferases [Secondary metabolites biosynthesis, transport, and catabolism / General function prediction only]
Probab=97.97 E-value=0.00014 Score=63.14 Aligned_cols=103 Identities=20% Similarity=0.232 Sum_probs=67.2
Q ss_pred EEEEcCccchHHHHHhcCCCCCceEEEEeCChHHHHHHHHHHhhhhhcccccCCCCCCCccEEEEEcCccc--cCCCC-C
Q 002218 717 LVDFGCGSGSLLDSLLDYPTALEKIVGVDISQKSLSRAAKIIHSKLSKKLDAAVPCTDVKSAVLFDGSITV--FDSRL-H 793 (952)
Q Consensus 717 VLDIGCGeG~ll~~LAr~g~~~~qVVGVDISeemLe~ArkrLsa~la~~~~~l~Pr~~~~nVtf~qGDa~d--Lpf~d-~ 793 (952)
++|+|||.|... .+.........++|+|++..++..++..... . ....+.+..++... +++.. .
T Consensus 52 ~ld~~~g~g~~~-~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~-~-----------~~~~~~~~~~~~~~~~~~~~~~~ 118 (257)
T COG0500 52 VLDIGCGTGRLA-LLARLGGRGAYVVGVDLSPEMLALARARAEG-A-----------GLGLVDFVVADALGGVLPFEDSA 118 (257)
T ss_pred eEEecCCcCHHH-HHHHhCCCCceEEEEeCCHHHHHHHHhhhhh-c-----------CCCceEEEEeccccCCCCCCCCC
Confidence 999999999954 2333221114899999999999985443210 0 00116788888776 66666 4
Q ss_pred CccEEEEccccccCChhHHHHHHHHHHHccCCC-EEEEEecCC
Q 002218 794 GFDIGTCLEVIEHMEEDEASQFGNIVLSSFRPR-ILIVSTPNY 835 (952)
Q Consensus 794 sFDVVVcieVIEHL~dD~l~~L~eeI~RvLKPG-~LIISTPN~ 835 (952)
.||++ +.....|... ......++.+.++|+ .+++...+.
T Consensus 119 ~~d~~-~~~~~~~~~~--~~~~~~~~~~~l~~~g~~~~~~~~~ 158 (257)
T COG0500 119 SFDLV-ISLLVLHLLP--PAKALRELLRVLKPGGRLVLSDLLR 158 (257)
T ss_pred ceeEE-eeeeehhcCC--HHHHHHHHHHhcCCCcEEEEEeccC
Confidence 89999 5554444432 334445799999997 777766654
No 172
>PF01739 CheR: CheR methyltransferase, SAM binding domain; InterPro: IPR022642 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. Flagellated bacteria swim towards favourable chemicals and away from deleterious ones. Sensing of chemoeffector gradients involves chemotaxis receptors, transmembrane (TM) proteins that detect stimuli through their periplasmic domains and transduce the signals via their cytoplasmic domains []. Signalling outputs from these receptors are influenced both by the binding of the chemoeffector ligand to their periplasmic domains and by methylation of specific glutamate residues on their cytoplasmic domains. Methylation is catalysed by CheR, an S-adenosylmethionine-dependent methyltransferase [], which reversibly methylates specific glutamate residues within a coiled coil region, to form gamma-glutamyl methyl ester residues [, ]. The structure of the Salmonella typhimurium chemotaxis receptor methyltransferase CheR, bound to S-adenosylhomocysteine, has been determined to a resolution of 2.0 A []. The structure reveals CheR to be a two-domain protein, with a smaller N-terminal helical domain linked via a single polypeptide connection to a larger C-terminal alpha/beta domain. The C-terminal domain has the characteristics of a nucleotide-binding fold, with an insertion of a small anti-parallel beta-sheet subdomain. The S-adenosylhomocysteine-binding site is formed mainly by the large domain, with contributions from residues within the N-terminal domain and the linker region []. CheR proteins are part of the chemotaxis signaling mechanism which methylates the chemotaxis receptor at specific glutamate residues. This entry refers to the C-terminal SAM-binding domain of the CherR-type MCP methyltransferases, which are found in bacteria, archaea and green plants. This entry is found in association with PF03705 from PFAM. ; PDB: 1AF7_A 1BC5_A.
Probab=97.95 E-value=4.8e-05 Score=79.49 Aligned_cols=121 Identities=17% Similarity=0.098 Sum_probs=71.3
Q ss_pred CCCEEEEEcCccchHHHHHh----c---C-CCCCceEEEEeCChHHHHHHHHHHhh--hhhcc-----cccC-CCCC---
Q 002218 713 CATTLVDFGCGSGSLLDSLL----D---Y-PTALEKIVGVDISQKSLSRAAKIIHS--KLSKK-----LDAA-VPCT--- 773 (952)
Q Consensus 713 k~krVLDIGCGeG~ll~~LA----r---~-g~~~~qVVGVDISeemLe~ArkrLsa--~la~~-----~~~l-~Pr~--- 773 (952)
+.-+|+..||++|.=...|| + . .+...+|+|.|||+.+|+.|++-.-. .+... ..+- ...+
T Consensus 31 ~~lrIWSagCStGeE~YSlAmll~e~~~~~~~~~~~I~atDi~~~~L~~Ar~G~Y~~~~~~~~~~~~~~ryf~~~~~~~~ 110 (196)
T PF01739_consen 31 RPLRIWSAGCSTGEEPYSLAMLLLELLPGALGWDFRILATDISPSALEKARAGIYPERSLRGLPPAYLRRYFTERDGGGY 110 (196)
T ss_dssp S-EEEEETT-TTTHHHHHHHHHHHHHH-S-TT-SEEEEEEES-HHHHHHHHHTEEEGGGGTTS-HHHHHHHEEEE-CCCT
T ss_pred CCeEEEECCCCCChhHHHHHHHHHHHhcccCCCceEEEEEECCHHHHHHHHhCCCCHHHHhhhHHHHHHHhccccCCCce
Confidence 45699999999997543332 2 1 11137999999999999999753110 00000 0000 0000
Q ss_pred -----CCccEEEEEcCccccCCCCCCccEEEEccccccCChhHHHHHHHHHHHccCCCEEEEEec
Q 002218 774 -----DVKSAVLFDGSITVFDSRLHGFDIGTCLEVIEHMEEDEASQFGNIVLSSFRPRILIVSTP 833 (952)
Q Consensus 774 -----~~~nVtf~qGDa~dLpf~d~sFDVVVcieVIEHL~dD~l~~L~eeI~RvLKPG~LIISTP 833 (952)
--..|+|.+.|+.+.+...+.||+|+|-.|+-|+.++....+.+.+.+.|+||++++.-+
T Consensus 111 ~v~~~lr~~V~F~~~NL~~~~~~~~~fD~I~CRNVlIYF~~~~~~~vl~~l~~~L~pgG~L~lG~ 175 (196)
T PF01739_consen 111 RVKPELRKMVRFRRHNLLDPDPPFGRFDLIFCRNVLIYFDPETQQRVLRRLHRSLKPGGYLFLGH 175 (196)
T ss_dssp TE-HHHHTTEEEEE--TT-S------EEEEEE-SSGGGS-HHHHHHHHHHHGGGEEEEEEEEE-T
T ss_pred eEChHHcCceEEEecccCCCCcccCCccEEEecCEEEEeCHHHHHHHHHHHHHHcCCCCEEEEec
Confidence 123699999999985556789999999999999998888888899999999994444433
No 173
>COG0220 Predicted S-adenosylmethionine-dependent methyltransferase [General function prediction only]
Probab=97.91 E-value=4.9e-05 Score=81.15 Aligned_cols=114 Identities=18% Similarity=0.211 Sum_probs=87.3
Q ss_pred CCEEEEEcCccchHHHHHhcCCCCCceEEEEeCChHHHHHHHHHHhhhhhcccccCCCCCCCccEEEEEcCccccC---C
Q 002218 714 ATTLVDFGCGSGSLLDSLLDYPTALEKIVGVDISQKSLSRAAKIIHSKLSKKLDAAVPCTDVKSAVLFDGSITVFD---S 790 (952)
Q Consensus 714 ~krVLDIGCGeG~ll~~LAr~g~~~~qVVGVDISeemLe~ArkrLsa~la~~~~~l~Pr~~~~nVtf~qGDa~dLp---f 790 (952)
...+||||||.|.++..+|+.. |...++|||+....+..|.+++.+ .+..|+.++++|+.++- +
T Consensus 49 ~pi~lEIGfG~G~~l~~~A~~n-P~~nfiGiEi~~~~v~~~l~k~~~------------~~l~Nlri~~~DA~~~l~~~~ 115 (227)
T COG0220 49 APIVLEIGFGMGEFLVEMAKKN-PEKNFLGIEIRVPGVAKALKKIKE------------LGLKNLRLLCGDAVEVLDYLI 115 (227)
T ss_pred CcEEEEECCCCCHHHHHHHHHC-CCCCEEEEEEehHHHHHHHHHHHH------------cCCCcEEEEcCCHHHHHHhcC
Confidence 4689999999999999999987 678999999999999999877653 23449999999997743 2
Q ss_pred CCCCccEEEEccccccCChh------HHHHHHHHHHHccCCC-EEEEEecCCchhHH
Q 002218 791 RLHGFDIGTCLEVIEHMEED------EASQFGNIVLSSFRPR-ILIVSTPNYEYNAI 840 (952)
Q Consensus 791 ~d~sFDVVVcieVIEHL~dD------~l~~L~eeI~RvLKPG-~LIISTPN~efN~l 840 (952)
++++.|-|...+-=-|-... ....|.+.+.++|+|| .+.+.|-+.+|-..
T Consensus 116 ~~~sl~~I~i~FPDPWpKkRH~KRRl~~~~fl~~~a~~Lk~gG~l~~aTD~~~y~e~ 172 (227)
T COG0220 116 PDGSLDKIYINFPDPWPKKRHHKRRLTQPEFLKLYARKLKPGGVLHFATDNEEYFEW 172 (227)
T ss_pred CCCCeeEEEEECCCCCCCccccccccCCHHHHHHHHHHccCCCEEEEEecCHHHHHH
Confidence 45688888775543222210 0236677899999999 88899988776655
No 174
>PF08123 DOT1: Histone methylation protein DOT1 ; InterPro: IPR013110 The DOT1 domain regulates gene expression by methylating histone H3 []. H3 methylation by DOT1 has been shown to be required for the DNA damage checkpoint in yeast [].; GO: 0018024 histone-lysine N-methyltransferase activity; PDB: 4ER3_A 4ER6_A 4EQZ_A 1NW3_A 3UWP_A 4ER5_A 3QOX_A 3SX0_A 4ER7_A 3SR4_A ....
Probab=97.88 E-value=4.9e-05 Score=79.97 Aligned_cols=133 Identities=17% Similarity=0.156 Sum_probs=76.8
Q ss_pred chhHHHHHHHHHHHhhcCCCCEEEEEcCccchHHHHHhcCCCCCceEEEEeCChHHHHHHHHHHhhhhhcccccCCCCCC
Q 002218 695 PPLSKQRVEYALQHIKESCATTLVDFGCGSGSLLDSLLDYPTALEKIVGVDISQKSLSRAAKIIHSKLSKKLDAAVPCTD 774 (952)
Q Consensus 695 PPL~~QR~efVldlL~~~k~krVLDIGCGeG~ll~~LAr~g~~~~qVVGVDISeemLe~ArkrLsa~la~~~~~l~Pr~~ 774 (952)
-++.......+.+.++..+....+|||||.|......+-.. ...+.+||++.+...+.|.............. ...
T Consensus 24 GEi~~~~~~~il~~~~l~~~dvF~DlGSG~G~~v~~aal~~-~~~~~~GIEi~~~~~~~a~~~~~~~~~~~~~~---g~~ 99 (205)
T PF08123_consen 24 GEISPEFVSKILDELNLTPDDVFYDLGSGVGNVVFQAALQT-GCKKSVGIEILPELHDLAEELLEELKKRMKHY---GKR 99 (205)
T ss_dssp GGCHHHHHHHHHHHTT--TT-EEEEES-TTSHHHHHHHHHH---SEEEEEE-SHHHHHHHHHHHHHHHHHHHHC---TB-
T ss_pred eecCHHHHHHHHHHhCCCCCCEEEECCCCCCHHHHHHHHHc-CCcEEEEEEechHHHHHHHHHHHHHHHHHHHh---hcc
Confidence 34445555556677777778899999999999987666543 23569999999998888875433211110000 123
Q ss_pred CccEEEEEcCccccCCC---CCCccEEEEccccccCChhHHHHHHHHHHHccCCCEEEEEecC
Q 002218 775 VKSAVLFDGSITVFDSR---LHGFDIGTCLEVIEHMEEDEASQFGNIVLSSFRPRILIVSTPN 834 (952)
Q Consensus 775 ~~nVtf~qGDa~dLpf~---d~sFDVVVcieVIEHL~dD~l~~L~eeI~RvLKPG~LIISTPN 834 (952)
..++++.+||+.+.++. ....|+|++.... ++++-...+ ..++.-||+|..||++..
T Consensus 100 ~~~v~l~~gdfl~~~~~~~~~s~AdvVf~Nn~~--F~~~l~~~L-~~~~~~lk~G~~IIs~~~ 159 (205)
T PF08123_consen 100 PGKVELIHGDFLDPDFVKDIWSDADVVFVNNTC--FDPDLNLAL-AELLLELKPGARIISTKP 159 (205)
T ss_dssp --EEEEECS-TTTHHHHHHHGHC-SEEEE--TT--T-HHHHHHH-HHHHTTS-TT-EEEESS-
T ss_pred cccceeeccCccccHhHhhhhcCCCEEEEeccc--cCHHHHHHH-HHHHhcCCCCCEEEECCC
Confidence 45889999998775532 2457999998764 454555555 457888999966666643
No 175
>PRK11727 23S rRNA mA1618 methyltransferase; Provisional
Probab=97.84 E-value=6.1e-05 Score=84.16 Aligned_cols=98 Identities=19% Similarity=0.192 Sum_probs=63.9
Q ss_pred chhHHHHHHHHH---HHhhc--------CCCCEEEEEcCccchHHHHHhcCCCCCceEEEEeCChHHHHHHHHHHhhhhh
Q 002218 695 PPLSKQRVEYAL---QHIKE--------SCATTLVDFGCGSGSLLDSLLDYPTALEKIVGVDISQKSLSRAAKIIHSKLS 763 (952)
Q Consensus 695 PPL~~QR~efVl---dlL~~--------~k~krVLDIGCGeG~ll~~LAr~g~~~~qVVGVDISeemLe~ArkrLsa~la 763 (952)
.|--+.|.+|+. +++.. ....++||||||+|.....|+... ...+++|+||++.+++.|++++....
T Consensus 85 cPpiP~R~~Yi~~l~dll~~~~~~~~p~~~~~~vLDIGtGag~I~~lLa~~~-~~~~~~atDId~~Al~~A~~Nv~~Np- 162 (321)
T PRK11727 85 CPPIPGRADYIHHLADLLAEDNGGVIPRGANVRVLDIGVGANCIYPLIGVHE-YGWRFVGSDIDPQALASAQAIISANP- 162 (321)
T ss_pred CCCCCcHHHHHHHHHHHhcccccccCCCCCCceEEEecCCccHHHHHHHhhC-CCCEEEEEeCCHHHHHHHHHHHHhcc-
Confidence 344456666754 44422 145799999999998777676543 23789999999999999998875320
Q ss_pred cccccCCCCCCCccEEEEE-cCccccC----CCCCCccEEEEccc
Q 002218 764 KKLDAAVPCTDVKSAVLFD-GSITVFD----SRLHGFDIGTCLEV 803 (952)
Q Consensus 764 ~~~~~l~Pr~~~~nVtf~q-GDa~dLp----f~d~sFDVVVcieV 803 (952)
....+|++.+ .+..++. .....||+|+|.==
T Consensus 163 ---------~l~~~I~~~~~~~~~~i~~~i~~~~~~fDlivcNPP 198 (321)
T PRK11727 163 ---------GLNGAIRLRLQKDSKAIFKGIIHKNERFDATLCNPP 198 (321)
T ss_pred ---------CCcCcEEEEEccchhhhhhcccccCCceEEEEeCCC
Confidence 1123577753 3333322 23568999999643
No 176
>PRK05031 tRNA (uracil-5-)-methyltransferase; Validated
Probab=97.82 E-value=5.3e-05 Score=85.46 Aligned_cols=76 Identities=22% Similarity=0.373 Sum_probs=58.8
Q ss_pred hHHHHHHHHHHHhhcCCCCEEEEEcCccchHHHHHhcCCCCCceEEEEeCChHHHHHHHHHHhhhhhcccccCCCCCCCc
Q 002218 697 LSKQRVEYALQHIKESCATTLVDFGCGSGSLLDSLLDYPTALEKIVGVDISQKSLSRAAKIIHSKLSKKLDAAVPCTDVK 776 (952)
Q Consensus 697 L~~QR~efVldlL~~~k~krVLDIGCGeG~ll~~LAr~g~~~~qVVGVDISeemLe~ArkrLsa~la~~~~~l~Pr~~~~ 776 (952)
..+..++++.+.+... +.+|||++||+|.++..|++.. .+|+|||+++.+++.|++++.. .+..
T Consensus 191 ~~e~l~~~v~~~~~~~-~~~vLDl~~G~G~~sl~la~~~---~~v~~vE~~~~ai~~a~~N~~~------------~~~~ 254 (362)
T PRK05031 191 VNEKMLEWALDATKGS-KGDLLELYCGNGNFTLALARNF---RRVLATEISKPSVAAAQYNIAA------------NGID 254 (362)
T ss_pred HHHHHHHHHHHHhhcC-CCeEEEEeccccHHHHHHHhhC---CEEEEEECCHHHHHHHHHHHHH------------hCCC
Confidence 3445556666655432 3579999999999999999876 6899999999999999987642 2344
Q ss_pred cEEEEEcCcccc
Q 002218 777 SAVLFDGSITVF 788 (952)
Q Consensus 777 nVtf~qGDa~dL 788 (952)
+++++.+|+.+.
T Consensus 255 ~v~~~~~d~~~~ 266 (362)
T PRK05031 255 NVQIIRMSAEEF 266 (362)
T ss_pred cEEEEECCHHHH
Confidence 799999998663
No 177
>PRK04338 N(2),N(2)-dimethylguanosine tRNA methyltransferase; Provisional
Probab=97.81 E-value=0.00017 Score=82.34 Aligned_cols=109 Identities=15% Similarity=0.127 Sum_probs=75.2
Q ss_pred HHHHHhhcC-CCCEEEEEcCccchHHHHHhcCCCCCceEEEEeCChHHHHHHHHHHhhhhhcccccCCCCCCCccEEEEE
Q 002218 704 YALQHIKES-CATTLVDFGCGSGSLLDSLLDYPTALEKIVGVDISQKSLSRAAKIIHSKLSKKLDAAVPCTDVKSAVLFD 782 (952)
Q Consensus 704 fVldlL~~~-k~krVLDIGCGeG~ll~~LAr~g~~~~qVVGVDISeemLe~ArkrLsa~la~~~~~l~Pr~~~~nVtf~q 782 (952)
.+.+.+... +..+|||++||+|.++..++...+ ..+|+++|+++.+++.+++++.. .+..++++.+
T Consensus 47 ~v~~~~~~~~~~~~vLDl~aGsG~~~l~~a~~~~-~~~V~a~Din~~Av~~a~~N~~~------------N~~~~~~v~~ 113 (382)
T PRK04338 47 LVLRAFGPKLPRESVLDALSASGIRGIRYALETG-VEKVTLNDINPDAVELIKKNLEL------------NGLENEKVFN 113 (382)
T ss_pred HHHHHHHhhcCCCEEEECCCcccHHHHHHHHHCC-CCEEEEEeCCHHHHHHHHHHHHH------------hCCCceEEEh
Confidence 344444322 346899999999999999987542 35899999999999999987642 2344677999
Q ss_pred cCccccCCCCCCccEEEEccccccCChhHHHHHHHHHHHccCCC-EEEEE
Q 002218 783 GSITVFDSRLHGFDIGTCLEVIEHMEEDEASQFGNIVLSSFRPR-ILIVS 831 (952)
Q Consensus 783 GDa~dLpf~d~sFDVVVcieVIEHL~dD~l~~L~eeI~RvLKPG-~LIIS 831 (952)
+|+..+......||+|++- -. . .. ..+.+...+.+++| ++.++
T Consensus 114 ~Da~~~l~~~~~fD~V~lD-P~---G-s~-~~~l~~al~~~~~~gilyvS 157 (382)
T PRK04338 114 KDANALLHEERKFDVVDID-PF---G-SP-APFLDSAIRSVKRGGLLCVT 157 (382)
T ss_pred hhHHHHHhhcCCCCEEEEC-CC---C-Cc-HHHHHHHHHHhcCCCEEEEE
Confidence 9997653224569999873 21 2 11 23434456678888 77776
No 178
>PF05185 PRMT5: PRMT5 arginine-N-methyltransferase; InterPro: IPR007857 The human homologue of Saccharomyces cerevisiae Skb1 (Shk1 kinase-binding protein 1) is a protein methyltransferase []. These proteins seem to play a role in Jak signalling.; GO: 0008168 methyltransferase activity, 0005737 cytoplasm; PDB: 2Y1W_C 2Y1X_D 2V7E_B 2V74_H 3R0Q_G 3B3F_B 3B3J_A 3B3G_A 3UA3_A 3UA4_B ....
Probab=97.79 E-value=0.00013 Score=84.95 Aligned_cols=104 Identities=13% Similarity=0.186 Sum_probs=67.1
Q ss_pred CCEEEEEcCccchHHHHHhcCC---CCCceEEEEeCChHHHHHHHHHHhhhhhcccccCCCCCCCccEEEEEcCccccCC
Q 002218 714 ATTLVDFGCGSGSLLDSLLDYP---TALEKIVGVDISQKSLSRAAKIIHSKLSKKLDAAVPCTDVKSAVLFDGSITVFDS 790 (952)
Q Consensus 714 ~krVLDIGCGeG~ll~~LAr~g---~~~~qVVGVDISeemLe~ArkrLsa~la~~~~~l~Pr~~~~nVtf~qGDa~dLpf 790 (952)
.+.|+|||||+|-+....++.+ +...+|++|+.++.++...++++... +...+|+++++|+++...
T Consensus 187 ~~vVldVGAGrGpL~~~al~A~~~~~~a~~VyAVEkn~~A~~~l~~~v~~n-----------~w~~~V~vi~~d~r~v~l 255 (448)
T PF05185_consen 187 DKVVLDVGAGRGPLSMFALQAGARAGGAVKVYAVEKNPNAVVTLQKRVNAN-----------GWGDKVTVIHGDMREVEL 255 (448)
T ss_dssp T-EEEEES-TTSHHHHHHHHTTHHHCCESEEEEEESSTHHHHHHHHHHHHT-----------TTTTTEEEEES-TTTSCH
T ss_pred ceEEEEeCCCccHHHHHHHHHHHHhCCCeEEEEEcCCHhHHHHHHHHHHhc-----------CCCCeEEEEeCcccCCCC
Confidence 5789999999999987665543 12369999999998887766553321 223579999999999875
Q ss_pred CCCCccEEEEccccccCCh-hHHHHHHHHHHHccCCCEEEE
Q 002218 791 RLHGFDIGTCLEVIEHMEE-DEASQFGNIVLSSFRPRILIV 830 (952)
Q Consensus 791 ~d~sFDVVVcieVIEHL~d-D~l~~L~eeI~RvLKPG~LII 830 (952)
+ .++|+||+= .+-.+.. +-.........++||||.++|
T Consensus 256 p-ekvDIIVSE-lLGsfg~nEl~pE~Lda~~rfLkp~Gi~I 294 (448)
T PF05185_consen 256 P-EKVDIIVSE-LLGSFGDNELSPECLDAADRFLKPDGIMI 294 (448)
T ss_dssp S-S-EEEEEE----BTTBTTTSHHHHHHHGGGGEEEEEEEE
T ss_pred C-CceeEEEEe-ccCCccccccCHHHHHHHHhhcCCCCEEe
Confidence 4 489999982 2222221 111222345788999996655
No 179
>TIGR00095 RNA methyltransferase, RsmD family. This model represents a family of uncharacterized bacterial proteins. Members are present in nearly every complete bacterial genome, always in a single copy. PSI-BLAST analysis shows homology to several families of SAM-dependent methyltransferases, including ribosomal RNA adenine dimethylases.
Probab=97.79 E-value=0.00033 Score=72.41 Aligned_cols=125 Identities=12% Similarity=0.002 Sum_probs=78.0
Q ss_pred chhHHHHHHHHHHHhh-cCCCCEEEEEcCccchHHHHHhcCCCCCceEEEEeCChHHHHHHHHHHhhhhhcccccCCCCC
Q 002218 695 PPLSKQRVEYALQHIK-ESCATTLVDFGCGSGSLLDSLLDYPTALEKIVGVDISQKSLSRAAKIIHSKLSKKLDAAVPCT 773 (952)
Q Consensus 695 PPL~~QR~efVldlL~-~~k~krVLDIGCGeG~ll~~LAr~g~~~~qVVGVDISeemLe~ArkrLsa~la~~~~~l~Pr~ 773 (952)
.|....-.+.+.+.+. ...+.+|||++||+|.++..++.+|. ..|++||+++.+++.+++++... .
T Consensus 30 rpt~~~vrea~f~~l~~~~~g~~vLDLfaGsG~lglea~srga--~~v~~vE~~~~a~~~~~~N~~~~-----------~ 96 (189)
T TIGR00095 30 RPTTRVVRELFFNILRPEIQGAHLLDVFAGSGLLGEEALSRGA--KVAFLEEDDRKANQTLKENLALL-----------K 96 (189)
T ss_pred CCchHHHHHHHHHHHHHhcCCCEEEEecCCCcHHHHHHHhCCC--CEEEEEeCCHHHHHHHHHHHHHh-----------C
Confidence 3444444445555543 24678999999999999999999884 58999999999999998876532 1
Q ss_pred CCccEEEEEcCcccc-C-C-CCC-CccEEEEcccc-ccCChhHHHHHHHHHHHccCCC-EEEEEecC
Q 002218 774 DVKSAVLFDGSITVF-D-S-RLH-GFDIGTCLEVI-EHMEEDEASQFGNIVLSSFRPR-ILIVSTPN 834 (952)
Q Consensus 774 ~~~nVtf~qGDa~dL-p-f-~d~-sFDVVVcieVI-EHL~dD~l~~L~eeI~RvLKPG-~LIISTPN 834 (952)
...+++++++|+.+. . . ... .||+|+.-=-. .....+....+.+ ..+|+++ .+++..+.
T Consensus 97 ~~~~~~~~~~D~~~~l~~~~~~~~~~dvv~~DPPy~~~~~~~~l~~l~~--~~~l~~~~iiv~E~~~ 161 (189)
T TIGR00095 97 SGEQAEVVRNSALRALKFLAKKPTFDNVIYLDPPFFNGALQALLELCEN--NWILEDTVLIVVEEDR 161 (189)
T ss_pred CcccEEEEehhHHHHHHHhhccCCCceEEEECcCCCCCcHHHHHHHHHH--CCCCCCCeEEEEEecC
Confidence 113689999999553 2 1 122 36777652111 1122122222221 3478888 66655543
No 180
>KOG2940 consensus Predicted methyltransferase [General function prediction only]
Probab=97.77 E-value=3.5e-05 Score=82.25 Aligned_cols=101 Identities=16% Similarity=0.198 Sum_probs=81.2
Q ss_pred CCCEEEEEcCccchHHHHHhcCCCCCceEEEEeCChHHHHHHHHHHhhhhhcccccCCCCCCCccEEEEEcCccccCCCC
Q 002218 713 CATTLVDFGCGSGSLLDSLLDYPTALEKIVGVDISQKSLSRAAKIIHSKLSKKLDAAVPCTDVKSAVLFDGSITVFDSRL 792 (952)
Q Consensus 713 k~krVLDIGCGeG~ll~~LAr~g~~~~qVVGVDISeemLe~ArkrLsa~la~~~~~l~Pr~~~~nVtf~qGDa~dLpf~d 792 (952)
....++|||||-|...+.|...+ ..+++-+|.|..|++.++.-- .....+..+.+|-+.+++.+
T Consensus 72 ~fp~a~diGcs~G~v~rhl~~e~--vekli~~DtS~~M~~s~~~~q--------------dp~i~~~~~v~DEE~Ldf~e 135 (325)
T KOG2940|consen 72 SFPTAFDIGCSLGAVKRHLRGEG--VEKLIMMDTSYDMIKSCRDAQ--------------DPSIETSYFVGDEEFLDFKE 135 (325)
T ss_pred hCcceeecccchhhhhHHHHhcc--hhheeeeecchHHHHHhhccC--------------CCceEEEEEecchhcccccc
Confidence 34689999999999999998876 589999999999999996521 11225677889999999999
Q ss_pred CCccEEEEccccccCChhHHHHHHHHHHHccCCCEEEEE
Q 002218 793 HGFDIGTCLEVIEHMEEDEASQFGNIVLSSFRPRILIVS 831 (952)
Q Consensus 793 ~sFDVVVcieVIEHL~dD~l~~L~eeI~RvLKPG~LIIS 831 (952)
++||+|+++..+|++.+-+ .-+. .+...|||+.++|.
T Consensus 136 ns~DLiisSlslHW~NdLP-g~m~-~ck~~lKPDg~Fia 172 (325)
T KOG2940|consen 136 NSVDLIISSLSLHWTNDLP-GSMI-QCKLALKPDGLFIA 172 (325)
T ss_pred cchhhhhhhhhhhhhccCc-hHHH-HHHHhcCCCccchh
Confidence 9999999999999887433 4444 48999999955553
No 181
>PF09243 Rsm22: Mitochondrial small ribosomal subunit Rsm22; InterPro: IPR015324 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. Rsm22 has been identified as a mitochondrial small ribosomal subunit [] and is a methyltransferase. In Schizosaccharomyces pombe (Fission yeast), Rsm22 is tandemly fused to Cox11 (a factor required for copper insertion into cytochrome oxidase) and the two proteins are proteolytically cleaved after import into the mitochondria []. This entry consists of mitochondrial Rsm22 and homologous sequences from bacteria.; GO: 0008168 methyltransferase activity, 0006412 translation
Probab=97.75 E-value=0.00015 Score=78.95 Aligned_cols=111 Identities=17% Similarity=0.227 Sum_probs=73.7
Q ss_pred cCCCCEEEEEcCccchHHHHHhcCCCCCceEEEEeCChHHHHHHHHHHhhhhhcccccCCCCCCCccEEEEEcCccccCC
Q 002218 711 ESCATTLVDFGCGSGSLLDSLLDYPTALEKIVGVDISQKSLSRAAKIIHSKLSKKLDAAVPCTDVKSAVLFDGSITVFDS 790 (952)
Q Consensus 711 ~~k~krVLDIGCGeG~ll~~LAr~g~~~~qVVGVDISeemLe~ArkrLsa~la~~~~~l~Pr~~~~nVtf~qGDa~dLpf 790 (952)
...+.+|||+|||.|.-+....+..+...++++||.|+.|++.++..+.... ......+......+. .
T Consensus 31 ~f~P~~vLD~GsGpGta~wAa~~~~~~~~~~~~vd~s~~~~~l~~~l~~~~~-----------~~~~~~~~~~~~~~~-~ 98 (274)
T PF09243_consen 31 DFRPRSVLDFGSGPGTALWAAREVWPSLKEYTCVDRSPEMLELAKRLLRAGP-----------NNRNAEWRRVLYRDF-L 98 (274)
T ss_pred CCCCceEEEecCChHHHHHHHHHHhcCceeeeeecCCHHHHHHHHHHHhccc-----------ccccchhhhhhhccc-c
Confidence 4577899999999999887666544345789999999999999987654211 001111111111111 1
Q ss_pred CCCCccEEEEccccccCChhHHHHHHHHHHHccCCCEEEEEecC
Q 002218 791 RLHGFDIGTCLEVIEHMEEDEASQFGNIVLSSFRPRILIVSTPN 834 (952)
Q Consensus 791 ~d~sFDVVVcieVIEHL~dD~l~~L~eeI~RvLKPG~LIISTPN 834 (952)
.....|+|++.++|..+++..+..+.+.+.+.+++ .+||..|.
T Consensus 99 ~~~~~DLvi~s~~L~EL~~~~r~~lv~~LW~~~~~-~LVlVEpG 141 (274)
T PF09243_consen 99 PFPPDDLVIASYVLNELPSAARAELVRSLWNKTAP-VLVLVEPG 141 (274)
T ss_pred cCCCCcEEEEehhhhcCCchHHHHHHHHHHHhccC-cEEEEcCC
Confidence 12234999999999999987677777777777766 66665554
No 182
>PLN02823 spermine synthase
Probab=97.74 E-value=0.00026 Score=79.60 Aligned_cols=108 Identities=21% Similarity=0.177 Sum_probs=75.4
Q ss_pred CCCEEEEEcCccchHHHHHhcCCCCCceEEEEeCChHHHHHHHHHHhhhhhcccccCCCCCCCccEEEEEcCccccC-CC
Q 002218 713 CATTLVDFGCGSGSLLDSLLDYPTALEKIVGVDISQKSLSRAAKIIHSKLSKKLDAAVPCTDVKSAVLFDGSITVFD-SR 791 (952)
Q Consensus 713 k~krVLDIGCGeG~ll~~LAr~g~~~~qVVGVDISeemLe~ArkrLsa~la~~~~~l~Pr~~~~nVtf~qGDa~dLp-f~ 791 (952)
.+++||.||+|.|..++.++++. +..+|+.||+++++++.|++.+..... ....++++++.+|+..+- ..
T Consensus 103 ~pk~VLiiGgG~G~~~re~l~~~-~~~~v~~VEiD~~vv~lar~~~~~~~~--------~~~dprv~v~~~Da~~~L~~~ 173 (336)
T PLN02823 103 NPKTVFIMGGGEGSTAREVLRHK-TVEKVVMCDIDQEVVDFCRKHLTVNRE--------AFCDKRLELIINDARAELEKR 173 (336)
T ss_pred CCCEEEEECCCchHHHHHHHhCC-CCCeEEEEECCHHHHHHHHHhcccccc--------cccCCceEEEEChhHHHHhhC
Confidence 56899999999999999888865 357899999999999999876531100 012468999999997743 23
Q ss_pred CCCccEEEEccccccC---ChhH--HHHHHH-HHHHccCCCEEEE
Q 002218 792 LHGFDIGTCLEVIEHM---EEDE--ASQFGN-IVLSSFRPRILIV 830 (952)
Q Consensus 792 d~sFDVVVcieVIEHL---~dD~--l~~L~e-eI~RvLKPG~LII 830 (952)
.+.||+|++- +.... +... -..|.+ .+.+.|+||.+++
T Consensus 174 ~~~yDvIi~D-~~dp~~~~~~~~Lyt~eF~~~~~~~~L~p~Gvlv 217 (336)
T PLN02823 174 DEKFDVIIGD-LADPVEGGPCYQLYTKSFYERIVKPKLNPGGIFV 217 (336)
T ss_pred CCCccEEEec-CCCccccCcchhhccHHHHHHHHHHhcCCCcEEE
Confidence 5689999974 22211 0000 123445 6899999994444
No 183
>PRK00050 16S rRNA m(4)C1402 methyltranserfase; Provisional
Probab=97.71 E-value=7e-05 Score=82.85 Aligned_cols=85 Identities=12% Similarity=0.108 Sum_probs=67.1
Q ss_pred HHHHHHhhcCCCCEEEEEcCccchHHHHHhcCCCCCceEEEEeCChHHHHHHHHHHhhhhhcccccCCCCCCCccEEEEE
Q 002218 703 EYALQHIKESCATTLVDFGCGSGSLLDSLLDYPTALEKIVGVDISQKSLSRAAKIIHSKLSKKLDAAVPCTDVKSAVLFD 782 (952)
Q Consensus 703 efVldlL~~~k~krVLDIGCGeG~ll~~LAr~g~~~~qVVGVDISeemLe~ArkrLsa~la~~~~~l~Pr~~~~nVtf~q 782 (952)
+.+++.+...++..+||.+||.|..+..+++..++..+|+|+|.++++++.|++++.+ ..++++++
T Consensus 9 ~Evl~~L~~~pg~~vlD~TlG~GGhS~~il~~~~~~g~VigiD~D~~al~~ak~~L~~--------------~~ri~~i~ 74 (296)
T PRK00050 9 DEVVDALAIKPDGIYVDGTFGGGGHSRAILERLGPKGRLIAIDRDPDAIAAAKDRLKP--------------FGRFTLVH 74 (296)
T ss_pred HHHHHhhCCCCCCEEEEeCcCChHHHHHHHHhCCCCCEEEEEcCCHHHHHHHHHhhcc--------------CCcEEEEe
Confidence 4566666666778999999999999999998864457999999999999999887631 24799999
Q ss_pred cCccccCCC--C--CCccEEEEc
Q 002218 783 GSITVFDSR--L--HGFDIGTCL 801 (952)
Q Consensus 783 GDa~dLpf~--d--~sFDVVVci 801 (952)
+|..++... . .++|.|++-
T Consensus 75 ~~f~~l~~~l~~~~~~vDgIl~D 97 (296)
T PRK00050 75 GNFSNLKEVLAEGLGKVDGILLD 97 (296)
T ss_pred CCHHHHHHHHHcCCCccCEEEEC
Confidence 999876421 1 269998873
No 184
>TIGR03439 methyl_EasF probable methyltransferase domain, EasF family. This model represents an uncharacterized domain of about 300 amino acids with homology to S-adenosylmethionine-dependent methyltransferases. Proteins with this domain are exclusively fungal. A few, such as EasF from Neotyphodium lolii, are associated with the biosynthesis of ergot alkaloids, a class of fungal secondary metabolites. EasF may, in fact, be the AdoMet:dimethylallyltryptophan N-methyltransferase, the enzyme that follows tryptophan dimethylallyltransferase (DMATS) in ergot alkaloid biosynthesis. Several other members of this family, including mug158 (meiotically up-regulated gene 158 protein) from Schizosaccharomyces pombe, contain an additional uncharacterized domain DUF323 (pfam03781).
Probab=97.70 E-value=0.00027 Score=78.98 Aligned_cols=108 Identities=17% Similarity=0.170 Sum_probs=78.2
Q ss_pred CCCEEEEEcCccchHHHHHhcCC---CCCceEEEEeCChHHHHHHHHHHhhhhhcccccCCCCCCCccE--EEEEcCccc
Q 002218 713 CATTLVDFGCGSGSLLDSLLDYP---TALEKIVGVDISQKSLSRAAKIIHSKLSKKLDAAVPCTDVKSA--VLFDGSITV 787 (952)
Q Consensus 713 k~krVLDIGCGeG~ll~~LAr~g---~~~~qVVGVDISeemLe~ArkrLsa~la~~~~~l~Pr~~~~nV--tf~qGDa~d 787 (952)
.+..|+|+|||.|.-+..|.+.. .....+++||||.++|+.+.+++.. ...+.+ .-+.||..+
T Consensus 76 ~~~~lIELGsG~~~Kt~~LL~aL~~~~~~~~Y~plDIS~~~L~~a~~~L~~------------~~~p~l~v~~l~gdy~~ 143 (319)
T TIGR03439 76 SGSMLVELGSGNLRKVGILLEALERQKKSVDYYALDVSRSELQRTLAELPL------------GNFSHVRCAGLLGTYDD 143 (319)
T ss_pred CCCEEEEECCCchHHHHHHHHHHHhcCCCceEEEEECCHHHHHHHHHhhhh------------ccCCCeEEEEEEecHHH
Confidence 45589999999999766544321 1236799999999999999887751 122344 447888755
Q ss_pred c----CC--CCCCccEEEEcc-ccccCChhHHHHHHHHHHH-ccCCC-EEEEEe
Q 002218 788 F----DS--RLHGFDIGTCLE-VIEHMEEDEASQFGNIVLS-SFRPR-ILIVST 832 (952)
Q Consensus 788 L----pf--~d~sFDVVVcie-VIEHL~dD~l~~L~eeI~R-vLKPG-~LIIST 832 (952)
. +. ......+++..+ +|.++++++...|.+.+.+ .|+|| .++|..
T Consensus 144 ~l~~l~~~~~~~~~r~~~flGSsiGNf~~~ea~~fL~~~~~~~l~~~d~lLiG~ 197 (319)
T TIGR03439 144 GLAWLKRPENRSRPTTILWLGSSIGNFSRPEAAAFLAGFLATALSPSDSFLIGL 197 (319)
T ss_pred HHhhcccccccCCccEEEEeCccccCCCHHHHHHHHHHHHHhhCCCCCEEEEec
Confidence 3 21 123467888776 8999999999999999999 99998 776644
No 185
>KOG1661 consensus Protein-L-isoaspartate(D-aspartate) O-methyltransferase [Posttranslational modification, protein turnover, chaperones]
Probab=97.69 E-value=0.0002 Score=75.80 Aligned_cols=132 Identities=13% Similarity=0.178 Sum_probs=88.5
Q ss_pred chhHHHHHHHHHHHhhcCCCCEEEEEcCccchHHHHHhcC-CCCCceEEEEeCChHHHHHHHHHHhhhhhcccccCCCCC
Q 002218 695 PPLSKQRVEYALQHIKESCATTLVDFGCGSGSLLDSLLDY-PTALEKIVGVDISQKSLSRAAKIIHSKLSKKLDAAVPCT 773 (952)
Q Consensus 695 PPL~~QR~efVldlL~~~k~krVLDIGCGeG~ll~~LAr~-g~~~~qVVGVDISeemLe~ArkrLsa~la~~~~~l~Pr~ 773 (952)
|.+|..-++++.+.| .++.+.||+|.|+|+++..++.. +.+...++|||.-++.++.+++++...... ++. .-..
T Consensus 66 p~mha~~le~L~~~L--~pG~s~LdvGsGSGYLt~~~~~mvg~~g~~~~GIEh~~eLVe~Sk~nl~k~i~~-~e~-~~~~ 141 (237)
T KOG1661|consen 66 PHMHATALEYLDDHL--QPGASFLDVGSGSGYLTACFARMVGATGGNVHGIEHIPELVEYSKKNLDKDITT-SES-SSKL 141 (237)
T ss_pred hHHHHHHHHHHHHhh--ccCcceeecCCCccHHHHHHHHHhcCCCccccchhhhHHHHHHHHHHHHhhccC-chh-hhhh
Confidence 445554444444444 47899999999999999877743 212245599999999999999988754311 000 0011
Q ss_pred CCccEEEEEcCccccCCCCCCccEEEEccccccCChhHHHHHHHHHHHccCCC-EEEEEecCCchh
Q 002218 774 DVKSAVLFDGSITVFDSRLHGFDIGTCLEVIEHMEEDEASQFGNIVLSSFRPR-ILIVSTPNYEYN 838 (952)
Q Consensus 774 ~~~nVtf~qGDa~dLpf~d~sFDVVVcieVIEHL~dD~l~~L~eeI~RvLKPG-~LIISTPN~efN 838 (952)
...++.+..||......+...||.|.+...-. .+.+++...|+|| .++|+.-...++
T Consensus 142 ~~~~l~ivvGDgr~g~~e~a~YDaIhvGAaa~--------~~pq~l~dqL~~gGrllip~~~~~~~ 199 (237)
T KOG1661|consen 142 KRGELSIVVGDGRKGYAEQAPYDAIHVGAAAS--------ELPQELLDQLKPGGRLLIPVGQDGGT 199 (237)
T ss_pred ccCceEEEeCCccccCCccCCcceEEEccCcc--------ccHHHHHHhhccCCeEEEeecccCce
Confidence 23478899999999888889999998874422 2234577778887 777765533333
No 186
>PF05958 tRNA_U5-meth_tr: tRNA (Uracil-5-)-methyltransferase; InterPro: IPR010280 This family consists of (uracil-5-)-methyltransferases 2.1.1.35 from EC from bacteria, archaea and eukaryotes. A 5-methyluridine (m(5)U) residue at position 54 is a conserved feature of bacterial and eukaryotic tRNAs. The methylation of U54 is catalysed by the tRNA(m5U54)methyltransferase, which in Saccharomyces cerevisiae is encoded by the nonessential TRM2 gene. It is thought that tRNA modification enzymes might have a role in tRNA maturation not necessarily linked to their known catalytic activity []. This protein family also contains the 23SrRNA methyltransferases, first proposed to be RNA methyltransferases by homology to the TrmA family. The member from Escherichia coli has now been shown to act as the 23S RNA methyltransferase for the conserved U1939. The gene is now designated rumA and was previously designated ygcA [].; GO: 0008173 RNA methyltransferase activity, 0006396 RNA processing; PDB: 2VS1_A 2JJQ_A 2BH2_A 1UWV_A 3BT7_B.
Probab=97.68 E-value=0.00015 Score=81.76 Aligned_cols=77 Identities=21% Similarity=0.362 Sum_probs=59.6
Q ss_pred hhHHHHHHHHHHHhhcCCCCEEEEEcCccchHHHHHhcCCCCCceEEEEeCChHHHHHHHHHHhhhhhcccccCCCCCCC
Q 002218 696 PLSKQRVEYALQHIKESCATTLVDFGCGSGSLLDSLLDYPTALEKIVGVDISQKSLSRAAKIIHSKLSKKLDAAVPCTDV 775 (952)
Q Consensus 696 PL~~QR~efVldlL~~~k~krVLDIGCGeG~ll~~LAr~g~~~~qVVGVDISeemLe~ArkrLsa~la~~~~~l~Pr~~~ 775 (952)
....+.++++.+.+...+. +|||+=||.|.++..|++.. .+|+|||+++.+++.|++++.. .+.
T Consensus 180 ~~~~~l~~~~~~~l~~~~~-~vlDlycG~G~fsl~la~~~---~~V~gvE~~~~av~~A~~Na~~------------N~i 243 (352)
T PF05958_consen 180 EQNEKLYEQALEWLDLSKG-DVLDLYCGVGTFSLPLAKKA---KKVIGVEIVEEAVEDARENAKL------------NGI 243 (352)
T ss_dssp HHHHHHHHHHHHHCTT-TT-EEEEES-TTTCCHHHHHCCS---SEEEEEES-HHHHHHHHHHHHH------------TT-
T ss_pred HHHHHHHHHHHHHhhcCCC-cEEEEeecCCHHHHHHHhhC---CeEEEeeCCHHHHHHHHHHHHH------------cCC
Confidence 4566788888888886655 89999999999999999987 7999999999999999987652 356
Q ss_pred ccEEEEEcCcccc
Q 002218 776 KSAVLFDGSITVF 788 (952)
Q Consensus 776 ~nVtf~qGDa~dL 788 (952)
.+++|+.+++.++
T Consensus 244 ~n~~f~~~~~~~~ 256 (352)
T PF05958_consen 244 DNVEFIRGDAEDF 256 (352)
T ss_dssp -SEEEEE--SHHC
T ss_pred CcceEEEeeccch
Confidence 7899999888665
No 187
>COG2265 TrmA SAM-dependent methyltransferases related to tRNA (uracil-5-)-methyltransferase [Translation, ribosomal structure and biogenesis]
Probab=97.66 E-value=0.00015 Score=83.98 Aligned_cols=90 Identities=19% Similarity=0.295 Sum_probs=76.9
Q ss_pred hhHHHHHHHHHHHhhcCCCCEEEEEcCccchHHHHHhcCCCCCceEEEEeCChHHHHHHHHHHhhhhhcccccCCCCCCC
Q 002218 696 PLSKQRVEYALQHIKESCATTLVDFGCGSGSLLDSLLDYPTALEKIVGVDISQKSLSRAAKIIHSKLSKKLDAAVPCTDV 775 (952)
Q Consensus 696 PL~~QR~efVldlL~~~k~krVLDIGCGeG~ll~~LAr~g~~~~qVVGVDISeemLe~ArkrLsa~la~~~~~l~Pr~~~ 775 (952)
......++++.+.+...++.+|||+=||.|.|+..||+.. .+|+|+|+++++++.|++++.. .+.
T Consensus 276 ~~~ekl~~~a~~~~~~~~~~~vlDlYCGvG~f~l~lA~~~---~~V~gvEi~~~aV~~A~~NA~~------------n~i 340 (432)
T COG2265 276 AVAEKLYETALEWLELAGGERVLDLYCGVGTFGLPLAKRV---KKVHGVEISPEAVEAAQENAAA------------NGI 340 (432)
T ss_pred HHHHHHHHHHHHHHhhcCCCEEEEeccCCChhhhhhcccC---CEEEEEecCHHHHHHHHHHHHH------------cCC
Confidence 4566788899999988888999999999999999999877 8999999999999999987652 456
Q ss_pred ccEEEEEcCccccCCCC---CCccEEEE
Q 002218 776 KSAVLFDGSITVFDSRL---HGFDIGTC 800 (952)
Q Consensus 776 ~nVtf~qGDa~dLpf~d---~sFDVVVc 800 (952)
.|++|..++++++.... ..+|+|+.
T Consensus 341 ~N~~f~~~~ae~~~~~~~~~~~~d~Vvv 368 (432)
T COG2265 341 DNVEFIAGDAEEFTPAWWEGYKPDVVVV 368 (432)
T ss_pred CcEEEEeCCHHHHhhhccccCCCCEEEE
Confidence 68999999998876543 57899975
No 188
>COG1352 CheR Methylase of chemotaxis methyl-accepting proteins [Cell motility and secretion / Signal transduction mechanisms]
Probab=97.65 E-value=0.00033 Score=76.65 Aligned_cols=118 Identities=19% Similarity=0.170 Sum_probs=82.1
Q ss_pred CCCEEEEEcCccchHH----HHHhcCCC----CCceEEEEeCChHHHHHHHHHHhh--hh-hcc--------cccC-CC-
Q 002218 713 CATTLVDFGCGSGSLL----DSLLDYPT----ALEKIVGVDISQKSLSRAAKIIHS--KL-SKK--------LDAA-VP- 771 (952)
Q Consensus 713 k~krVLDIGCGeG~ll----~~LAr~g~----~~~qVVGVDISeemLe~ArkrLsa--~l-a~~--------~~~l-~P- 771 (952)
..-+|+-.||++|.=. ..|.+..+ ...+|+|.|||..+|+.|+.-.-+ .. .+. -+.. .+
T Consensus 96 ~~irIWSaaCStGEEpYSiAm~l~e~~~~~~~~~~~I~AtDId~~~L~~A~~G~Y~~~~~~~~~~~~~~~ryF~~~~~~~ 175 (268)
T COG1352 96 RPIRIWSAACSTGEEPYSLAMLLLEALGKLAGFRVKILATDIDLSVLEKARAGIYPSRELLRGLPPELLRRYFERGGDGS 175 (268)
T ss_pred CceEEEecCcCCCccHHHHHHHHHHHhccccCCceEEEEEECCHHHHHHHhcCCCChhHhhccCCHHHHhhhEeecCCCc
Confidence 3679999999999733 33333331 248999999999999999743211 00 000 0000 00
Q ss_pred ----CCCCccEEEEEcCccccCCCCCCccEEEEccccccCChhHHHHHHHHHHHccCCC-EEEE
Q 002218 772 ----CTDVKSAVLFDGSITVFDSRLHGFDIGTCLEVIEHMEEDEASQFGNIVLSSFRPR-ILIV 830 (952)
Q Consensus 772 ----r~~~~nVtf~qGDa~dLpf~d~sFDVVVcieVIEHL~dD~l~~L~eeI~RvLKPG-~LII 830 (952)
..-...|+|.+.|+.+-++..+.||+|+|-.|+-++..+.+..+.+.+...|+|| .+++
T Consensus 176 y~v~~~ir~~V~F~~~NLl~~~~~~~~fD~IfCRNVLIYFd~~~q~~il~~f~~~L~~gG~Lfl 239 (268)
T COG1352 176 YRVKEELRKMVRFRRHNLLDDSPFLGKFDLIFCRNVLIYFDEETQERILRRFADSLKPGGLLFL 239 (268)
T ss_pred EEEChHHhcccEEeecCCCCCccccCCCCEEEEcceEEeeCHHHHHHHHHHHHHHhCCCCEEEE
Confidence 0012368899999987665667899999999999999888888888999999999 5555
No 189
>COG0030 KsgA Dimethyladenosine transferase (rRNA methylation) [Translation, ribosomal structure and biogenesis]
Probab=97.61 E-value=0.00023 Score=77.55 Aligned_cols=89 Identities=12% Similarity=0.188 Sum_probs=71.0
Q ss_pred HHHHHHHhhcCCCCEEEEEcCccchHHHHHhcCCCCCceEEEEeCChHHHHHHHHHHhhhhhcccccCCCCCCCccEEEE
Q 002218 702 VEYALQHIKESCATTLVDFGCGSGSLLDSLLDYPTALEKIVGVDISQKSLSRAAKIIHSKLSKKLDAAVPCTDVKSAVLF 781 (952)
Q Consensus 702 ~efVldlL~~~k~krVLDIGCGeG~ll~~LAr~g~~~~qVVGVDISeemLe~ArkrLsa~la~~~~~l~Pr~~~~nVtf~ 781 (952)
.+.+++.+...++..|||||+|.|.++..|++.+ .+|++|++++.++..-++++. ...+++++
T Consensus 19 ~~kIv~~a~~~~~d~VlEIGpG~GaLT~~Ll~~~---~~v~aiEiD~~l~~~L~~~~~--------------~~~n~~vi 81 (259)
T COG0030 19 IDKIVEAANISPGDNVLEIGPGLGALTEPLLERA---ARVTAIEIDRRLAEVLKERFA--------------PYDNLTVI 81 (259)
T ss_pred HHHHHHhcCCCCCCeEEEECCCCCHHHHHHHhhc---CeEEEEEeCHHHHHHHHHhcc--------------cccceEEE
Confidence 3456666666678899999999999999999998 789999999999999877642 23589999
Q ss_pred EcCccccCCCCC-CccEEEEccccccCC
Q 002218 782 DGSITVFDSRLH-GFDIGTCLEVIEHME 808 (952)
Q Consensus 782 qGDa~dLpf~d~-sFDVVVcieVIEHL~ 808 (952)
++|+...++... .++.|+++ .=.++.
T Consensus 82 ~~DaLk~d~~~l~~~~~vVaN-lPY~Is 108 (259)
T COG0030 82 NGDALKFDFPSLAQPYKVVAN-LPYNIS 108 (259)
T ss_pred eCchhcCcchhhcCCCEEEEc-CCCccc
Confidence 999999887643 67777764 334454
No 190
>PF05148 Methyltransf_8: Hypothetical methyltransferase; InterPro: IPR007823 This family consists of uncharacterised eukaryotic proteins which are related to S-adenosyl-L-methionine-dependent methyltransferases.; GO: 0008168 methyltransferase activity; PDB: 2ZFU_B.
Probab=97.60 E-value=0.0002 Score=75.95 Aligned_cols=111 Identities=16% Similarity=0.264 Sum_probs=64.4
Q ss_pred hhhhcCCchhHHHHHHHHHHHhhcCC-CCEEEEEcCccchHHHHHhcCCCCCceEEEEeCChHHHHHHHHHHhhhhhccc
Q 002218 688 MEQALFSPPLSKQRVEYALQHIKESC-ATTLVDFGCGSGSLLDSLLDYPTALEKIVGVDISQKSLSRAAKIIHSKLSKKL 766 (952)
Q Consensus 688 ye~~~F~PPL~~QR~efVldlL~~~k-~krVLDIGCGeG~ll~~LAr~g~~~~qVVGVDISeemLe~ArkrLsa~la~~~ 766 (952)
|....-.||..+ ++.+.+.+...+ ...|.|+|||++.++..+.+ + .+|...|+-..
T Consensus 48 fr~Qv~~WP~nP--vd~iI~~l~~~~~~~viaD~GCGdA~la~~~~~-~---~~V~SfDLva~----------------- 104 (219)
T PF05148_consen 48 FRQQVKKWPVNP--VDVIIEWLKKRPKSLVIADFGCGDAKLAKAVPN-K---HKVHSFDLVAP----------------- 104 (219)
T ss_dssp HHHHHCTSSS-H--HHHHHHHHCTS-TTS-EEEES-TT-HHHHH--S-------EEEEESS-S-----------------
T ss_pred HHHHHhcCCCCc--HHHHHHHHHhcCCCEEEEECCCchHHHHHhccc-C---ceEEEeeccCC-----------------
Confidence 444444555555 345556555443 46999999999999977643 2 57999996321
Q ss_pred ccCCCCCCCccEEEEEcCccccCCCCCCccEEEEccccccCChhHHHHHHHHHHHccCCC-EEEEEecC
Q 002218 767 DAAVPCTDVKSAVLFDGSITVFDSRLHGFDIGTCLEVIEHMEEDEASQFGNIVLSSFRPR-ILIVSTPN 834 (952)
Q Consensus 767 ~~l~Pr~~~~nVtf~qGDa~dLpf~d~sFDVVVcieVIEHL~dD~l~~L~eeI~RvLKPG-~LIISTPN 834 (952)
+-.+..+|+...|.+++..|++|+.-.|.-- + ...|..+..|+|||| .+.|....
T Consensus 105 ----------n~~Vtacdia~vPL~~~svDv~VfcLSLMGT--n-~~~fi~EA~RvLK~~G~L~IAEV~ 160 (219)
T PF05148_consen 105 ----------NPRVTACDIANVPLEDESVDVAVFCLSLMGT--N-WPDFIREANRVLKPGGILKIAEVK 160 (219)
T ss_dssp ----------STTEEES-TTS-S--TT-EEEEEEES---SS----HHHHHHHHHHHEEEEEEEEEEEEG
T ss_pred ----------CCCEEEecCccCcCCCCceeEEEEEhhhhCC--C-cHHHHHHHHheeccCcEEEEEEec
Confidence 1125568999999999999999987665433 2 345667899999998 77776554
No 191
>PF02475 Met_10: Met-10+ like-protein; InterPro: IPR003402 This entry represents the Trm5 family. Trm5 specifically methylates the N1 position of guanosine-37 in various tRNAs [, , ]. Another members of this family, tRNA wybutosine-synthesizing protein 2 (Tyw2) and its homologues, are S-adenosyl-L-methionine-dependent transferases that act as a component of the wybutosine biosynthesis pathway [, ]. tRNA wybutosine-synthesizing protein 2 was originally thought to be a methyltransferase [].; GO: 0016740 transferase activity; PDB: 3A27_A 2ZZN_B 2YX1_A 2ZZM_A 3AY0_B 3K6R_A 3A26_A 3A25_A.
Probab=97.60 E-value=0.00016 Score=75.98 Aligned_cols=119 Identities=18% Similarity=0.206 Sum_probs=75.1
Q ss_pred hhhhcCCchhHHHHHHHHHHHhhcCCCCEEEEEcCccchHHHHHhcCCCCCceEEEEeCChHHHHHHHHHHhhhhhcccc
Q 002218 688 MEQALFSPPLSKQRVEYALQHIKESCATTLVDFGCGSGSLLDSLLDYPTALEKIVGVDISQKSLSRAAKIIHSKLSKKLD 767 (952)
Q Consensus 688 ye~~~F~PPL~~QR~efVldlL~~~k~krVLDIGCGeG~ll~~LAr~g~~~~qVVGVDISeemLe~ArkrLsa~la~~~~ 767 (952)
+...+|.|.+..+|.... +.+ .++.+|+|+-||-|.|+..+++.+ ....|+++|+++.+++..++++...
T Consensus 79 ~~kvyfs~rl~~Er~Ri~-~~v--~~~e~VlD~faGIG~f~l~~ak~~-~~~~V~A~d~Np~a~~~L~~Ni~lN------ 148 (200)
T PF02475_consen 79 LSKVYFSPRLSTERRRIA-NLV--KPGEVVLDMFAGIGPFSLPIAKHG-KAKRVYAVDLNPDAVEYLKENIRLN------ 148 (200)
T ss_dssp TTTS---GGGHHHHHHHH-TC----TT-EEEETT-TTTTTHHHHHHHT--SSEEEEEES-HHHHHHHHHHHHHT------
T ss_pred cceEEEccccHHHHHHHH-hcC--CcceEEEEccCCccHHHHHHhhhc-CccEEEEecCCHHHHHHHHHHHHHc------
Confidence 346678888888886544 333 357899999999999999999843 2378999999999999998876532
Q ss_pred cCCCCCCCccEEEEEcCccccCCCCCCccEEEEccccccCChhHHHHHHHHHHHccCCCEE
Q 002218 768 AAVPCTDVKSAVLFDGSITVFDSRLHGFDIGTCLEVIEHMEEDEASQFGNIVLSSFRPRIL 828 (952)
Q Consensus 768 ~l~Pr~~~~nVtf~qGDa~dLpf~d~sFDVVVcieVIEHL~dD~l~~L~eeI~RvLKPG~L 828 (952)
.-...+..+++|+.++.. ...||.|++..- ++ - ..|...+.+++++|.+
T Consensus 149 -----kv~~~i~~~~~D~~~~~~-~~~~drvim~lp-~~----~-~~fl~~~~~~~~~~g~ 197 (200)
T PF02475_consen 149 -----KVENRIEVINGDAREFLP-EGKFDRVIMNLP-ES----S-LEFLDAALSLLKEGGI 197 (200)
T ss_dssp -----T-TTTEEEEES-GGG----TT-EEEEEE--T-SS----G-GGGHHHHHHHEEEEEE
T ss_pred -----CCCCeEEEEcCCHHHhcC-ccccCEEEECCh-HH----H-HHHHHHHHHHhcCCcE
Confidence 112368999999998875 788999988432 11 1 1334457777887733
No 192
>PF09445 Methyltransf_15: RNA cap guanine-N2 methyltransferase; InterPro: IPR019012 RNA cap guanine-N2 methyltransferases such as Schizosaccharomyces pombe (Fission yeast) trimethylguanosine synthase (Tgs1) and Giardia lamblia (Giardia intestinalis) Tgs2, catalyse the methylation step(s) for the conversion of the 7-monomethylguanosine (m(7)G) caps of snRNAs and snoRNAs to a 2,2,7-trimethylguanosine (m(2,2,7)G) cap structure [, , ]. Trimethylguanosine synthase is specific for guanine, and N7 methylation must precede N2 methylation. This enzyme is required for pre-mRNA splicing, pre-rRNA processing and small ribosomal subunit synthesis. As such, this enzyme plays a role in transcriptional regulation. ; GO: 0008168 methyltransferase activity, 0001510 RNA methylation, 0009452 RNA capping; PDB: 3EGI_B 3GDH_A.
Probab=97.58 E-value=0.00047 Score=70.52 Aligned_cols=113 Identities=17% Similarity=0.195 Sum_probs=72.6
Q ss_pred CEEEEEcCccchHHHHHhcCCCCCceEEEEeCChHHHHHHHHHHhhhhhcccccCCCCCCCccEEEEEcCccccCCC--C
Q 002218 715 TTLVDFGCGSGSLLDSLLDYPTALEKIVGVDISQKSLSRAAKIIHSKLSKKLDAAVPCTDVKSAVLFDGSITVFDSR--L 792 (952)
Q Consensus 715 krVLDIGCGeG~ll~~LAr~g~~~~qVVGVDISeemLe~ArkrLsa~la~~~~~l~Pr~~~~nVtf~qGDa~dLpf~--d 792 (952)
..|+|+.||-|..+..+|+.+ .+|++||+++..++.|+.+..-. +-..+|++++||+.++... .
T Consensus 1 ~~vlD~fcG~GGNtIqFA~~~---~~Viaidid~~~~~~a~hNa~vY-----------Gv~~~I~~i~gD~~~~~~~~~~ 66 (163)
T PF09445_consen 1 TTVLDAFCGVGGNTIQFARTF---DRVIAIDIDPERLECAKHNAEVY-----------GVADNIDFICGDFFELLKRLKS 66 (163)
T ss_dssp SEEEETT-TTSHHHHHHHHTT----EEEEEES-HHHHHHHHHHHHHT-----------T-GGGEEEEES-HHHHGGGB--
T ss_pred CEEEEeccCcCHHHHHHHHhC---CeEEEEECCHHHHHHHHHHHHHc-----------CCCCcEEEEeCCHHHHHhhccc
Confidence 369999999999999999987 79999999999999999886532 1235899999999876432 1
Q ss_pred CC-ccEEEEc-------------ccc-ccCChhHHHHHHHHHHHccCCCEEEEEecCCchhHHHH
Q 002218 793 HG-FDIGTCL-------------EVI-EHMEEDEASQFGNIVLSSFRPRILIVSTPNYEYNAILQ 842 (952)
Q Consensus 793 ~s-FDVVVci-------------eVI-EHL~dD~l~~L~eeI~RvLKPG~LIISTPN~efN~lf~ 842 (952)
.. ||+|++. .-| .++.+-....+.+ ..+.+.+.+++.--.|.+.+.+..
T Consensus 67 ~~~~D~vFlSPPWGGp~Y~~~~~fdL~~~~~p~~~~~l~~-~~~~~t~nv~l~LPRn~dl~ql~~ 130 (163)
T PF09445_consen 67 NKIFDVVFLSPPWGGPSYSKKDVFDLEKSMQPFNLEDLLK-AARKITPNVVLFLPRNSDLNQLSQ 130 (163)
T ss_dssp ----SEEEE---BSSGGGGGSSSB-TTTSSSS--HHHHHH-HHHHH-S-EEEEEETTB-HHHHHH
T ss_pred cccccEEEECCCCCCccccccCccCHHHccCCCCHHHHHH-HHHhhCCCEEEEeCCCCCHHHHHH
Confidence 22 8999971 123 4555444556655 455556666666556777666544
No 193
>PF03141 Methyltransf_29: Putative S-adenosyl-L-methionine-dependent methyltransferase; InterPro: IPR004159 Members of this family of hypothetical plant proteins are putative methyltransferases. ; GO: 0008168 methyltransferase activity
Probab=97.58 E-value=7e-05 Score=87.21 Aligned_cols=112 Identities=19% Similarity=0.206 Sum_probs=71.8
Q ss_pred HHHHHHHhhc----CCCCEEEEEcCccchHHHHHhcCCCCCceEEEE---eCChHHHHHHHHHHhhhhhcccccCCCCCC
Q 002218 702 VEYALQHIKE----SCATTLVDFGCGSGSLLDSLLDYPTALEKIVGV---DISQKSLSRAAKIIHSKLSKKLDAAVPCTD 774 (952)
Q Consensus 702 ~efVldlL~~----~k~krVLDIGCGeG~ll~~LAr~g~~~~qVVGV---DISeemLe~ArkrLsa~la~~~~~l~Pr~~ 774 (952)
.+.+.+.+.. .....+||+|||.|.|+.+|.+++ ..++.+ |..+..++.|.+| +
T Consensus 102 id~i~~~~~~~~~~g~iR~~LDvGcG~aSF~a~l~~r~---V~t~s~a~~d~~~~qvqfaleR---------------G- 162 (506)
T PF03141_consen 102 IDQIAEMIPLIKWGGGIRTALDVGCGVASFGAYLLERN---VTTMSFAPNDEHEAQVQFALER---------------G- 162 (506)
T ss_pred HHHHHHHhhccccCCceEEEEeccceeehhHHHHhhCC---ceEEEcccccCCchhhhhhhhc---------------C-
Confidence 3445555543 234679999999999999999876 333333 3344566666543 1
Q ss_pred CccEEEEEcCccccCCCCCCccEEEEccccccCChhHHHHHHHHHHHccCCC-EEEEEecC
Q 002218 775 VKSAVLFDGSITVFDSRLHGFDIGTCLEVIEHMEEDEASQFGNIVLSSFRPR-ILIVSTPN 834 (952)
Q Consensus 775 ~~nVtf~qGDa~dLpf~d~sFDVVVcieVIEHL~dD~l~~L~eeI~RvLKPG-~LIISTPN 834 (952)
.+ ..+-......+|++++.||+|-|...+-....+....|. ++-|+|+|| .++.+.|-
T Consensus 163 vp-a~~~~~~s~rLPfp~~~fDmvHcsrc~i~W~~~~g~~l~-evdRvLRpGGyfv~S~pp 221 (506)
T PF03141_consen 163 VP-AMIGVLGSQRLPFPSNAFDMVHCSRCLIPWHPNDGFLLF-EVDRVLRPGGYFVLSGPP 221 (506)
T ss_pred cc-hhhhhhccccccCCccchhhhhcccccccchhcccceee-hhhhhhccCceEEecCCc
Confidence 11 111111235799999999999998876544434434444 699999999 77776663
No 194
>COG3963 Phospholipid N-methyltransferase [Lipid metabolism]
Probab=97.58 E-value=0.00055 Score=70.51 Aligned_cols=111 Identities=11% Similarity=0.132 Sum_probs=90.3
Q ss_pred HHHHHHhhcCCCCEEEEEcCccchHHHHHhcCCCCCceEEEEeCChHHHHHHHHHHhhhhhcccccCCCCCCCccEEEEE
Q 002218 703 EYALQHIKESCATTLVDFGCGSGSLLDSLLDYPTALEKIVGVDISQKSLSRAAKIIHSKLSKKLDAAVPCTDVKSAVLFD 782 (952)
Q Consensus 703 efVldlL~~~k~krVLDIGCGeG~ll~~LAr~g~~~~qVVGVDISeemLe~ArkrLsa~la~~~~~l~Pr~~~~nVtf~q 782 (952)
+.+...+....+..|||+|-|+|-++..+..++-....++.++.|++....-.++. +.++++.
T Consensus 38 ~~M~s~I~pesglpVlElGPGTGV~TkaIL~~gv~~~~L~~iE~~~dF~~~L~~~~-----------------p~~~ii~ 100 (194)
T COG3963 38 RKMASVIDPESGLPVLELGPGTGVITKAILSRGVRPESLTAIEYSPDFVCHLNQLY-----------------PGVNIIN 100 (194)
T ss_pred HHHHhccCcccCCeeEEEcCCccHhHHHHHhcCCCccceEEEEeCHHHHHHHHHhC-----------------CCccccc
Confidence 34555566778889999999999999999998866689999999999998876543 3567999
Q ss_pred cCccccC-----CCCCCccEEEEccccccCChhHHHHHHHHHHHccCCC-EEEE
Q 002218 783 GSITVFD-----SRLHGFDIGTCLEVIEHMEEDEASQFGNIVLSSFRPR-ILIV 830 (952)
Q Consensus 783 GDa~dLp-----f~d~sFDVVVcieVIEHL~dD~l~~L~eeI~RvLKPG-~LII 830 (952)
||+.++. ..+..||.|+|.--+-.++....-++.+.+...|.+| .++-
T Consensus 101 gda~~l~~~l~e~~gq~~D~viS~lPll~~P~~~~iaile~~~~rl~~gg~lvq 154 (194)
T COG3963 101 GDAFDLRTTLGEHKGQFFDSVISGLPLLNFPMHRRIAILESLLYRLPAGGPLVQ 154 (194)
T ss_pred cchhhHHHHHhhcCCCeeeeEEeccccccCcHHHHHHHHHHHHHhcCCCCeEEE
Confidence 9998875 3456799999988888888777778888899999998 4443
No 195
>PRK01544 bifunctional N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase/tRNA (m7G46) methyltransferase; Reviewed
Probab=97.56 E-value=0.00025 Score=83.49 Aligned_cols=115 Identities=11% Similarity=0.126 Sum_probs=85.6
Q ss_pred CCCEEEEEcCccchHHHHHhcCCCCCceEEEEeCChHHHHHHHHHHhhhhhcccccCCCCCCCccEEEEEcCccccC--C
Q 002218 713 CATTLVDFGCGSGSLLDSLLDYPTALEKIVGVDISQKSLSRAAKIIHSKLSKKLDAAVPCTDVKSAVLFDGSITVFD--S 790 (952)
Q Consensus 713 k~krVLDIGCGeG~ll~~LAr~g~~~~qVVGVDISeemLe~ArkrLsa~la~~~~~l~Pr~~~~nVtf~qGDa~dLp--f 790 (952)
....+||||||.|.++..+|+.. +...++|||+....+..+.++... .+..|+.++.+|+..+. +
T Consensus 347 ~~p~~lEIG~G~G~~~~~~A~~~-p~~~~iGiE~~~~~~~~~~~~~~~------------~~l~N~~~~~~~~~~~~~~~ 413 (506)
T PRK01544 347 KRKVFLEIGFGMGEHFINQAKMN-PDALFIGVEVYLNGVANVLKLAGE------------QNITNFLLFPNNLDLILNDL 413 (506)
T ss_pred CCceEEEECCCchHHHHHHHHhC-CCCCEEEEEeeHHHHHHHHHHHHH------------cCCCeEEEEcCCHHHHHHhc
Confidence 45789999999999999999887 678999999999988888766432 35568888888875432 4
Q ss_pred CCCCccEEEEccccccCChh------HHHHHHHHHHHccCCC-EEEEEecCCchhHH
Q 002218 791 RLHGFDIGTCLEVIEHMEED------EASQFGNIVLSSFRPR-ILIVSTPNYEYNAI 840 (952)
Q Consensus 791 ~d~sFDVVVcieVIEHL~dD------~l~~L~eeI~RvLKPG-~LIISTPN~efN~l 840 (952)
.++++|.|+..+-=-|-... ....|.+.+.++|+|| .+.+.|-+.+|...
T Consensus 414 ~~~sv~~i~i~FPDPWpKkrh~krRl~~~~fl~~~~~~Lk~gG~i~~~TD~~~y~~~ 470 (506)
T PRK01544 414 PNNSLDGIYILFPDPWIKNKQKKKRIFNKERLKILQDKLKDNGNLVFASDIENYFYE 470 (506)
T ss_pred CcccccEEEEECCCCCCCCCCccccccCHHHHHHHHHhcCCCCEEEEEcCCHHHHHH
Confidence 56789998876543222210 0236677899999999 88888887766543
No 196
>COG0421 SpeE Spermidine synthase [Amino acid transport and metabolism]
Probab=97.54 E-value=0.00048 Score=75.91 Aligned_cols=125 Identities=14% Similarity=0.143 Sum_probs=85.8
Q ss_pred hHHHHHHHHHHHhhcCCCCEEEEEcCccchHHHHHhcCCCCCceEEEEeCChHHHHHHHHHHhhhhhcccccCCCCCCCc
Q 002218 697 LSKQRVEYALQHIKESCATTLVDFGCGSGSLLDSLLDYPTALEKIVGVDISQKSLSRAAKIIHSKLSKKLDAAVPCTDVK 776 (952)
Q Consensus 697 L~~QR~efVldlL~~~k~krVLDIGCGeG~ll~~LAr~g~~~~qVVGVDISeemLe~ArkrLsa~la~~~~~l~Pr~~~~ 776 (952)
.+..+...+.-...+. +++||-||-|.|..++.+.++. +..+++.|||++..++.|++.+..... ....+
T Consensus 61 ~yhEml~h~~~~ah~~-pk~VLiiGgGdG~tlRevlkh~-~ve~i~~VEID~~Vi~~ar~~l~~~~~--------~~~dp 130 (282)
T COG0421 61 IYHEMLAHVPLLAHPN-PKRVLIIGGGDGGTLREVLKHL-PVERITMVEIDPAVIELARKYLPEPSG--------GADDP 130 (282)
T ss_pred HHHHHHHhchhhhCCC-CCeEEEECCCccHHHHHHHhcC-CcceEEEEEcCHHHHHHHHHhccCccc--------ccCCC
Confidence 4444443333333333 3799999999999999999997 689999999999999999987642110 01247
Q ss_pred cEEEEEcCccccCCC-CCCccEEEEccccccCChhH---HHHHHHHHHHccCCCEEEEEe
Q 002218 777 SAVLFDGSITVFDSR-LHGFDIGTCLEVIEHMEEDE---ASQFGNIVLSSFRPRILIVST 832 (952)
Q Consensus 777 nVtf~qGDa~dLpf~-d~sFDVVVcieVIEHL~dD~---l~~L~eeI~RvLKPG~LIIST 832 (952)
+++++.+|..++-.. ..+||+|++--. ....+.+ -..|.+.+.+.|+++.++++-
T Consensus 131 Rv~i~i~Dg~~~v~~~~~~fDvIi~D~t-dp~gp~~~Lft~eFy~~~~~~L~~~Gi~v~q 189 (282)
T COG0421 131 RVEIIIDDGVEFLRDCEEKFDVIIVDST-DPVGPAEALFTEEFYEGCRRALKEDGIFVAQ 189 (282)
T ss_pred ceEEEeccHHHHHHhCCCcCCEEEEcCC-CCCCcccccCCHHHHHHHHHhcCCCcEEEEe
Confidence 899999999775433 337999987433 2222100 245667899999999555544
No 197
>PF00035 dsrm: Double-stranded RNA binding motif; InterPro: IPR001159 The DsRBD domain is found in a variety of RNA-binding proteins with different structures and exhibiting a diversity of functions []. It is involved in localisation of at least five different mRNAs in the early Drosophila embryo and by interferon-induced protein kinase in humans, which is part of the cellular response to dsRNA.; GO: 0003725 double-stranded RNA binding, 0005622 intracellular; PDB: 1EKZ_A 1STU_A 1QU6_A 2L2M_A 3ADJ_A 1WHN_A 3LLH_B 2B7V_A 2L3J_A 1UHZ_A ....
Probab=97.51 E-value=0.00015 Score=61.47 Aligned_cols=36 Identities=33% Similarity=0.388 Sum_probs=34.0
Q ss_pred eEEEeeecCCceeeeccccccchHHHHHHHHHHHHc
Q 002218 57 LYRCSLQLPEFSVVSETFKKKKDAEQSAAEKALEKL 92 (952)
Q Consensus 57 ~~~c~l~lp~~~v~~~~~~~kkdaeq~aa~~al~kl 92 (952)
.|.|.+.+.+..+.+|.-..||+|+|.||+.||++|
T Consensus 32 ~f~~~~~i~~~~~~~g~g~sKk~Ak~~AA~~al~~L 67 (67)
T PF00035_consen 32 RFICTVYIDGKEYGEGEGSSKKEAKQQAAKKALQKL 67 (67)
T ss_dssp EEEEEEEETTEEEEEEEESSHHHHHHHHHHHHHHHH
T ss_pred eEEEEEEECCEEEeEeccCCHHHHHHHHHHHHHHhC
Confidence 999999999988888999999999999999999987
No 198
>PF12147 Methyltransf_20: Putative methyltransferase; InterPro: IPR022744 This C-terminal region is found in bacteria and eukaryotes and is approximately 110 amino acids in length. It is found in association with PF00561 from PFAM. Many members are annotated as being lysophospholipases, and others as alpha-beta hydrolase fold-containing proteins. This domain belongs to the S-adenosyl-L-methionine-dependent methyltransferases superfamily.
Probab=97.51 E-value=0.0018 Score=71.77 Aligned_cols=109 Identities=14% Similarity=0.155 Sum_probs=81.9
Q ss_pred CCCCEEEEEcCccchHHHHHhcCCCC-CceEEEEeCChHHHHHHHHHHhhhhhcccccCCCCCCCccE-EEEEcCccccC
Q 002218 712 SCATTLVDFGCGSGSLLDSLLDYPTA-LEKIVGVDISQKSLSRAAKIIHSKLSKKLDAAVPCTDVKSA-VLFDGSITVFD 789 (952)
Q Consensus 712 ~k~krVLDIGCGeG~ll~~LAr~g~~-~~qVVGVDISeemLe~ArkrLsa~la~~~~~l~Pr~~~~nV-tf~qGDa~dLp 789 (952)
..+-+||||.||.|++..-.....+. ...|.-.|.|+..++..++.+.+ .+..++ +|.++|+.+..
T Consensus 134 g~pvrIlDIAaG~GRYvlDal~~~~~~~~~i~LrDys~~Nv~~g~~li~~------------~gL~~i~~f~~~dAfd~~ 201 (311)
T PF12147_consen 134 GRPVRILDIAAGHGRYVLDALEKHPERPDSILLRDYSPINVEKGRALIAE------------RGLEDIARFEQGDAFDRD 201 (311)
T ss_pred CCceEEEEeccCCcHHHHHHHHhCCCCCceEEEEeCCHHHHHHHHHHHHH------------cCCccceEEEecCCCCHh
Confidence 36679999999999998766554422 36899999999999999887653 244455 99999997743
Q ss_pred C---CCCCccEEEEccccccCChhH-HHHHHHHHHHccCCC-EEEEEe
Q 002218 790 S---RLHGFDIGTCLEVIEHMEEDE-ASQFGNIVLSSFRPR-ILIVST 832 (952)
Q Consensus 790 f---~d~sFDVVVcieVIEHL~dD~-l~~L~eeI~RvLKPG-~LIIST 832 (952)
. -.-..|+++.++++|.+++.. ...-..-+.+.+.|| .+|.|.
T Consensus 202 ~l~~l~p~P~l~iVsGL~ElF~Dn~lv~~sl~gl~~al~pgG~lIyTg 249 (311)
T PF12147_consen 202 SLAALDPAPTLAIVSGLYELFPDNDLVRRSLAGLARALEPGGYLIYTG 249 (311)
T ss_pred HhhccCCCCCEEEEecchhhCCcHHHHHHHHHHHHHHhCCCcEEEEcC
Confidence 2 234579999999999999755 343445799999999 555443
No 199
>KOG1331 consensus Predicted methyltransferase [General function prediction only]
Probab=97.49 E-value=9.6e-05 Score=81.03 Aligned_cols=91 Identities=23% Similarity=0.356 Sum_probs=73.9
Q ss_pred CCCEEEEEcCccchHHHHHhcCCCCCceEEEEeCChHHHHHHHHHHhhhhhcccccCCCCCCCccEEEEEcCccccCCCC
Q 002218 713 CATTLVDFGCGSGSLLDSLLDYPTALEKIVGVDISQKSLSRAAKIIHSKLSKKLDAAVPCTDVKSAVLFDGSITVFDSRL 792 (952)
Q Consensus 713 k~krVLDIGCGeG~ll~~LAr~g~~~~qVVGVDISeemLe~ArkrLsa~la~~~~~l~Pr~~~~nVtf~qGDa~dLpf~d 792 (952)
.+..++|+|||.|.++. .. +...++|.|++...+..|++. + ......+|+..+|++.
T Consensus 45 ~gsv~~d~gCGngky~~---~~--p~~~~ig~D~c~~l~~~ak~~----------------~--~~~~~~ad~l~~p~~~ 101 (293)
T KOG1331|consen 45 TGSVGLDVGCGNGKYLG---VN--PLCLIIGCDLCTGLLGGAKRS----------------G--GDNVCRADALKLPFRE 101 (293)
T ss_pred CcceeeecccCCcccCc---CC--CcceeeecchhhhhccccccC----------------C--CceeehhhhhcCCCCC
Confidence 46789999999999974 21 347899999999999888642 1 1167788999999999
Q ss_pred CCccEEEEccccccCChh-HHHHHHHHHHHccCCC
Q 002218 793 HGFDIGTCLEVIEHMEED-EASQFGNIVLSSFRPR 826 (952)
Q Consensus 793 ~sFDVVVcieVIEHL~dD-~l~~L~eeI~RvLKPG 826 (952)
.+||.++++-|+||+... ......+++.|+++||
T Consensus 102 ~s~d~~lsiavihhlsT~~RR~~~l~e~~r~lrpg 136 (293)
T KOG1331|consen 102 ESFDAALSIAVIHHLSTRERRERALEELLRVLRPG 136 (293)
T ss_pred CccccchhhhhhhhhhhHHHHHHHHHHHHHHhcCC
Confidence 999999999999999843 3445567899999998
No 200
>PF13679 Methyltransf_32: Methyltransferase domain
Probab=97.47 E-value=0.001 Score=65.33 Aligned_cols=104 Identities=25% Similarity=0.308 Sum_probs=69.4
Q ss_pred CCCCEEEEEcCccchHHHHHhc-----CCCCCceEEEEeCChHHHHHHHHHHhhhhhcccccCCCCCCCccEEEEEcCcc
Q 002218 712 SCATTLVDFGCGSGSLLDSLLD-----YPTALEKIVGVDISQKSLSRAAKIIHSKLSKKLDAAVPCTDVKSAVLFDGSIT 786 (952)
Q Consensus 712 ~k~krVLDIGCGeG~ll~~LAr-----~g~~~~qVVGVDISeemLe~ArkrLsa~la~~~~~l~Pr~~~~nVtf~qGDa~ 786 (952)
.+..+|+|+|||.|+++..|+. .. ..+|+|||.++..++.+.++...... ....++.+.++++.
T Consensus 24 ~~~~~vvD~GsG~GyLs~~La~~l~~~~~--~~~v~~iD~~~~~~~~a~~~~~~~~~---------~~~~~~~~~~~~~~ 92 (141)
T PF13679_consen 24 KRCITVVDLGSGKGYLSRALAHLLCNSSP--NLRVLGIDCNESLVESAQKRAQKLGS---------DLEKRLSFIQGDIA 92 (141)
T ss_pred CCCCEEEEeCCChhHHHHHHHHHHHhcCC--CCeEEEEECCcHHHHHHHHHHHHhcc---------hhhccchhhccchh
Confidence 5678999999999999999988 43 38999999999999999877543210 11235667776665
Q ss_pred ccCCCCCCccEEEEccccccCChhHHHHHHHHHHHccCCC-EEEEEecC
Q 002218 787 VFDSRLHGFDIGTCLEVIEHMEEDEASQFGNIVLSSFRPR-ILIVSTPN 834 (952)
Q Consensus 787 dLpf~d~sFDVVVcieVIEHL~dD~l~~L~eeI~RvLKPG-~LIISTPN 834 (952)
+... ....++++....=--+.+.-+..| ++|+ ..++..|-
T Consensus 93 ~~~~-~~~~~~~vgLHaCG~Ls~~~l~~~-------~~~~~~~l~~vpC 133 (141)
T PF13679_consen 93 DESS-SDPPDILVGLHACGDLSDRALRLF-------IRPNARFLVLVPC 133 (141)
T ss_pred hhcc-cCCCeEEEEeecccchHHHHHHHH-------HHcCCCEEEEcCC
Confidence 4432 556788888766555553332222 2266 55555553
No 201
>KOG1500 consensus Protein arginine N-methyltransferase CARM1 [Posttranslational modification, protein turnover, chaperones; Transcription]
Probab=97.47 E-value=0.00061 Score=76.14 Aligned_cols=106 Identities=15% Similarity=0.138 Sum_probs=75.4
Q ss_pred cCCCCEEEEEcCccchHHHHHhcCCCCCceEEEEeCChHHHHHHHHHHhhhhhcccccCCCCCCCccEEEEEcCccccCC
Q 002218 711 ESCATTLVDFGCGSGSLLDSLLDYPTALEKIVGVDISQKSLSRAAKIIHSKLSKKLDAAVPCTDVKSAVLFDGSITVFDS 790 (952)
Q Consensus 711 ~~k~krVLDIGCGeG~ll~~LAr~g~~~~qVVGVDISeemLe~ArkrLsa~la~~~~~l~Pr~~~~nVtf~qGDa~dLpf 790 (952)
+..++.|||+|||+|.+....++.|. .+|.+|+. .+|.+.|++.+... ....+|+++.|.+++...
T Consensus 175 DF~~kiVlDVGaGSGILS~FAaqAGA--~~vYAvEA-S~MAqyA~~Lv~~N-----------~~~~rItVI~GKiEdieL 240 (517)
T KOG1500|consen 175 DFQDKIVLDVGAGSGILSFFAAQAGA--KKVYAVEA-SEMAQYARKLVASN-----------NLADRITVIPGKIEDIEL 240 (517)
T ss_pred ccCCcEEEEecCCccHHHHHHHHhCc--ceEEEEeh-hHHHHHHHHHHhcC-----------CccceEEEccCccccccC
Confidence 45778999999999999998888885 89999995 57888998765421 234589999999998765
Q ss_pred CCCCccEEEEccccccCChh-HHHHHHHHHHHccCCCEEEEEe
Q 002218 791 RLHGFDIGTCLEVIEHMEED-EASQFGNIVLSSFRPRILIVST 832 (952)
Q Consensus 791 ~d~sFDVVVcieVIEHL~dD-~l~~L~eeI~RvLKPG~LIIST 832 (952)
+ ++.|+|++--+=.-+-++ -+..+. ...++|||..-.++|
T Consensus 241 P-Ek~DviISEPMG~mL~NERMLEsYl-~Ark~l~P~GkMfPT 281 (517)
T KOG1500|consen 241 P-EKVDVIISEPMGYMLVNERMLESYL-HARKWLKPNGKMFPT 281 (517)
T ss_pred c-hhccEEEeccchhhhhhHHHHHHHH-HHHhhcCCCCcccCc
Confidence 3 689999873322222222 234444 367999997333333
No 202
>KOG1269 consensus SAM-dependent methyltransferases [Lipid transport and metabolism; General function prediction only]
Probab=97.47 E-value=0.0002 Score=81.29 Aligned_cols=103 Identities=17% Similarity=0.220 Sum_probs=81.1
Q ss_pred CCCEEEEEcCccchHHHHHhcCCCCCceEEEEeCChHHHHHHHHHHhhhhhcccccCCCCCCCccEEEEEcCccccCCCC
Q 002218 713 CATTLVDFGCGSGSLLDSLLDYPTALEKIVGVDISQKSLSRAAKIIHSKLSKKLDAAVPCTDVKSAVLFDGSITVFDSRL 792 (952)
Q Consensus 713 k~krVLDIGCGeG~ll~~LAr~g~~~~qVVGVDISeemLe~ArkrLsa~la~~~~~l~Pr~~~~nVtf~qGDa~dLpf~d 792 (952)
++.+++|+|||-|.....++.+.. ++++|+|.++..+.++........ ....-.+..+++.+.++++
T Consensus 110 ~~~~~~~~~~g~~~~~~~i~~f~~--~~~~Gl~~n~~e~~~~~~~~~~~~-----------l~~k~~~~~~~~~~~~fed 176 (364)
T KOG1269|consen 110 PGSKVLDVGTGVGGPSRYIAVFKK--AGVVGLDNNAYEAFRANELAKKAY-----------LDNKCNFVVADFGKMPFED 176 (364)
T ss_pred ccccccccCcCcCchhHHHHHhcc--CCccCCCcCHHHHHHHHHHHHHHH-----------hhhhcceehhhhhcCCCCc
Confidence 556899999999999999988764 889999999988888765432211 1113344788999999999
Q ss_pred CCccEEEEccccccCChhHHHHHHHHHHHccCCCEEEE
Q 002218 793 HGFDIGTCLEVIEHMEEDEASQFGNIVLSSFRPRILIV 830 (952)
Q Consensus 793 ~sFDVVVcieVIEHL~dD~l~~L~eeI~RvLKPG~LII 830 (952)
+.||.+.++++.+|.+... ..+ ++++|+++||.+++
T Consensus 177 n~fd~v~~ld~~~~~~~~~-~~y-~Ei~rv~kpGG~~i 212 (364)
T KOG1269|consen 177 NTFDGVRFLEVVCHAPDLE-KVY-AEIYRVLKPGGLFI 212 (364)
T ss_pred cccCcEEEEeecccCCcHH-HHH-HHHhcccCCCceEE
Confidence 9999999999999999444 444 57999999994444
No 203
>PRK11933 yebU rRNA (cytosine-C(5)-)-methyltransferase RsmF; Reviewed
Probab=97.38 E-value=0.0016 Score=76.49 Aligned_cols=113 Identities=16% Similarity=0.197 Sum_probs=83.0
Q ss_pred hcCCCCEEEEEcCccchHHHHHhcCCCCCceEEEEeCChHHHHHHHHHHhhhhhcccccCCCCCCCccEEEEEcCccccC
Q 002218 710 KESCATTLVDFGCGSGSLLDSLLDYPTALEKIVGVDISQKSLSRAAKIIHSKLSKKLDAAVPCTDVKSAVLFDGSITVFD 789 (952)
Q Consensus 710 ~~~k~krVLDIGCGeG~ll~~LAr~g~~~~qVVGVDISeemLe~ArkrLsa~la~~~~~l~Pr~~~~nVtf~qGDa~dLp 789 (952)
...++.+|||+++|.|.-+..++...+....|+++|+++.-++..++++.. .+..++.+...|...+.
T Consensus 110 ~~~pg~~VLD~CAAPGgKTt~la~~l~~~g~lvA~D~~~~R~~~L~~nl~r------------~G~~nv~v~~~D~~~~~ 177 (470)
T PRK11933 110 DDNAPQRVLDMAAAPGSKTTQIAALMNNQGAIVANEYSASRVKVLHANISR------------CGVSNVALTHFDGRVFG 177 (470)
T ss_pred CCCCCCEEEEeCCCccHHHHHHHHHcCCCCEEEEEeCCHHHHHHHHHHHHH------------cCCCeEEEEeCchhhhh
Confidence 556788999999999999999887643346899999999999999888762 35568888888887654
Q ss_pred C-CCCCccEEE----Ecc--ccccCCh--------------hHHHHHHHHHHHccCCC-EEEEEecC
Q 002218 790 S-RLHGFDIGT----CLE--VIEHMEE--------------DEASQFGNIVLSSFRPR-ILIVSTPN 834 (952)
Q Consensus 790 f-~d~sFDVVV----cie--VIEHL~d--------------D~l~~L~eeI~RvLKPG-~LIISTPN 834 (952)
. ....||.|+ |++ ++.+-++ ..+..+.+...++|||| .++-+|-.
T Consensus 178 ~~~~~~fD~ILvDaPCSG~G~~rk~p~~~~~~s~~~v~~l~~lQ~~iL~~A~~~LkpGG~LVYSTCT 244 (470)
T PRK11933 178 AALPETFDAILLDAPCSGEGTVRKDPDALKNWSPESNLEIAATQRELIESAFHALKPGGTLVYSTCT 244 (470)
T ss_pred hhchhhcCeEEEcCCCCCCcccccCHHHhhhCCHHHHHHHHHHHHHHHHHHHHHcCCCcEEEEECCC
Confidence 2 245799999 542 3333221 11234556789999999 77777764
No 204
>PRK11783 rlmL 23S rRNA m(2)G2445 methyltransferase; Provisional
Probab=97.37 E-value=0.0021 Score=78.72 Aligned_cols=143 Identities=17% Similarity=0.071 Sum_probs=89.9
Q ss_pred hhhhcCCchhHHHHHHHHHHHhhc-CCCCEEEEEcCccchHHHHHhcCC-------------------------------
Q 002218 688 MEQALFSPPLSKQRVEYALQHIKE-SCATTLVDFGCGSGSLLDSLLDYP------------------------------- 735 (952)
Q Consensus 688 ye~~~F~PPL~~QR~efVldlL~~-~k~krVLDIGCGeG~ll~~LAr~g------------------------------- 735 (952)
|......-|+.+.-...++....- .++..++|.+||+|.++...+...
T Consensus 164 yr~~~~~Apl~etlAaa~l~~a~w~~~~~~l~DP~CGSGTilIEAa~~~~~~~pg~~r~~f~f~~~~~~~~~~w~~~~~~ 243 (702)
T PRK11783 164 YRQATGEAPLKENLAAAILLRSGWPQEGTPLLDPMCGSGTLLIEAAMMAADIAPGLHRERWGFSGWLGHDEALWQELLEE 243 (702)
T ss_pred CccCCCCCCCcHHHHHHHHHHcCCCCCCCeEEccCCCccHHHHHHHHHHhcCCCCccccccccccCCCCCHHHHHHHHHH
Confidence 433333446766655566655443 356899999999999997665310
Q ss_pred ----------CCCceEEEEeCChHHHHHHHHHHhhhhhcccccCCCCCCCccEEEEEcCccccCCCC--CCccEEEEccc
Q 002218 736 ----------TALEKIVGVDISQKSLSRAAKIIHSKLSKKLDAAVPCTDVKSAVLFDGSITVFDSRL--HGFDIGTCLEV 803 (952)
Q Consensus 736 ----------~~~~qVVGVDISeemLe~ArkrLsa~la~~~~~l~Pr~~~~nVtf~qGDa~dLpf~d--~sFDVVVcieV 803 (952)
....+++|+|+++.+++.|++++... +....+++.++|+.+++... +.||+|+++==
T Consensus 244 a~~~~~~~~~~~~~~i~G~Did~~av~~A~~N~~~~-----------g~~~~i~~~~~D~~~~~~~~~~~~~d~IvtNPP 312 (702)
T PRK11783 244 AQERARAGLAELPSKFYGSDIDPRVIQAARKNARRA-----------GVAELITFEVKDVADLKNPLPKGPTGLVISNPP 312 (702)
T ss_pred HHHHHhhcccccCceEEEEECCHHHHHHHHHHHHHc-----------CCCcceEEEeCChhhcccccccCCCCEEEECCC
Confidence 00136999999999999999987531 12235899999998876543 47999999621
Q ss_pred -cccCCh-hHHHHHHHHHHHcc---CCC-EEEEEecCCchhHHH
Q 002218 804 -IEHMEE-DEASQFGNIVLSSF---RPR-ILIVSTPNYEYNAIL 841 (952)
Q Consensus 804 -IEHL~d-D~l~~L~eeI~RvL---KPG-~LIISTPN~efN~lf 841 (952)
.+.+.. .....+...+...+ .+| .+.+.|++.++...+
T Consensus 313 Yg~r~~~~~~l~~lY~~lg~~lk~~~~g~~~~llt~~~~l~~~~ 356 (702)
T PRK11783 313 YGERLGEEPALIALYSQLGRRLKQQFGGWNAALFSSSPELLSCL 356 (702)
T ss_pred CcCccCchHHHHHHHHHHHHHHHHhCCCCeEEEEeCCHHHHHHh
Confidence 122321 22222222333333 377 777788876655443
No 205
>KOG3045 consensus Predicted RNA methylase involved in rRNA processing [RNA processing and modification]
Probab=97.35 E-value=0.00054 Score=74.59 Aligned_cols=113 Identities=13% Similarity=0.263 Sum_probs=75.8
Q ss_pred hhhhcCCchhHHHHHHHHHHHhhc-CCCCEEEEEcCccchHHHHHhcCCCCCceEEEEeCChHHHHHHHHHHhhhhhccc
Q 002218 688 MEQALFSPPLSKQRVEYALQHIKE-SCATTLVDFGCGSGSLLDSLLDYPTALEKIVGVDISQKSLSRAAKIIHSKLSKKL 766 (952)
Q Consensus 688 ye~~~F~PPL~~QR~efVldlL~~-~k~krVLDIGCGeG~ll~~LAr~g~~~~qVVGVDISeemLe~ArkrLsa~la~~~ 766 (952)
|....-.||.++ ++.+.+.++. .....|.|+|||++.++. ... .+|..+|+-+ +
T Consensus 156 fr~QV~kWP~nP--ld~ii~~ik~r~~~~vIaD~GCGEakiA~---~~~---~kV~SfDL~a-----~------------ 210 (325)
T KOG3045|consen 156 FRSQVKKWPENP--LDVIIRKIKRRPKNIVIADFGCGEAKIAS---SER---HKVHSFDLVA-----V------------ 210 (325)
T ss_pred HHHHHHhCCCCh--HHHHHHHHHhCcCceEEEecccchhhhhh---ccc---cceeeeeeec-----C------------
Confidence 333333445444 2334444443 345689999999999985 222 6799999521 1
Q ss_pred ccCCCCCCCccEEEEEcCccccCCCCCCccEEEEccccccCChhHHHHHHHHHHHccCCC-EEEEEecCCchh
Q 002218 767 DAAVPCTDVKSAVLFDGSITVFDSRLHGFDIGTCLEVIEHMEEDEASQFGNIVLSSFRPR-ILIVSTPNYEYN 838 (952)
Q Consensus 767 ~~l~Pr~~~~nVtf~qGDa~dLpf~d~sFDVVVcieVIEHL~dD~l~~L~eeI~RvLKPG-~LIISTPN~efN 838 (952)
+-++..+|+.+.|.++++.|++|+.-.+ |. .....|.+++.|+|+|| .+.|....+.|.
T Consensus 211 ----------~~~V~~cDm~~vPl~d~svDvaV~CLSL--Mg-tn~~df~kEa~RiLk~gG~l~IAEv~SRf~ 270 (325)
T KOG3045|consen 211 ----------NERVIACDMRNVPLEDESVDVAVFCLSL--MG-TNLADFIKEANRILKPGGLLYIAEVKSRFS 270 (325)
T ss_pred ----------CCceeeccccCCcCccCcccEEEeeHhh--hc-ccHHHHHHHHHHHhccCceEEEEehhhhcc
Confidence 3346678999999999999999886554 33 33456667899999999 787876655443
No 206
>PRK00536 speE spermidine synthase; Provisional
Probab=97.34 E-value=0.0015 Score=71.36 Aligned_cols=99 Identities=12% Similarity=0.061 Sum_probs=71.6
Q ss_pred CCCCEEEEEcCccchHHHHHhcCCCCCceEEEEeCChHHHHHHHHHHhhhhhcccccCCCCCCCccEEEEEcCccccCCC
Q 002218 712 SCATTLVDFGCGSGSLLDSLLDYPTALEKIVGVDISQKSLSRAAKIIHSKLSKKLDAAVPCTDVKSAVLFDGSITVFDSR 791 (952)
Q Consensus 712 ~k~krVLDIGCGeG~ll~~LAr~g~~~~qVVGVDISeemLe~ArkrLsa~la~~~~~l~Pr~~~~nVtf~qGDa~dLpf~ 791 (952)
..+++||=||-|+|..++.++++. .+|+-|||++++++.+++.+...... -..++++++.. +.+ ..
T Consensus 71 ~~pk~VLIiGGGDGg~~REvLkh~---~~v~mVeID~~Vv~~~k~~lP~~~~~--------~~DpRv~l~~~-~~~--~~ 136 (262)
T PRK00536 71 KELKEVLIVDGFDLELAHQLFKYD---THVDFVQADEKILDSFISFFPHFHEV--------KNNKNFTHAKQ-LLD--LD 136 (262)
T ss_pred CCCCeEEEEcCCchHHHHHHHCcC---CeeEEEECCHHHHHHHHHHCHHHHHh--------hcCCCEEEeeh-hhh--cc
Confidence 367999999999999999999986 59999999999999999865432211 23457777752 211 12
Q ss_pred CCCccEEEEccccccCChhHHHHHHHHHHHccCCCEEEEE
Q 002218 792 LHGFDIGTCLEVIEHMEEDEASQFGNIVLSSFRPRILIVS 831 (952)
Q Consensus 792 d~sFDVVVcieVIEHL~dD~l~~L~eeI~RvLKPG~LIIS 831 (952)
.+.||+|+.-.. . + ..|.+.+.+.|+||+++++
T Consensus 137 ~~~fDVIIvDs~----~-~--~~fy~~~~~~L~~~Gi~v~ 169 (262)
T PRK00536 137 IKKYDLIICLQE----P-D--IHKIDGLKRMLKEDGVFIS 169 (262)
T ss_pred CCcCCEEEEcCC----C-C--hHHHHHHHHhcCCCcEEEE
Confidence 368999996532 2 2 2455679999999955554
No 207
>PF01564 Spermine_synth: Spermine/spermidine synthase; InterPro: IPR001045 Synonym(s): Spermidine aminopropyltransferase A group of polyamine biosynthetic enzymes involved in the fifth (last) step in the biosynthesis of spermidine from arginine and methionine which includes; spermidine synthase (2.5.1.16 from EC), spermine synthase (2.5.1.22 from EC) and putrescine N-methyltransferase (2.1.1.53 from EC) []. The Thermotoga maritima spermidine synthase monomer consists of two domains: an N-terminal domain composed of six beta-strands, and a Rossmann-like C- terminal domain []. The larger C-terminal catalytic core domain consists of a seven-stranded beta-sheet flanked by nine alpha helices. This domain resembles a topology observed in a number of nucleotide and dinucleotide-binding enzymes, and in S-adenosyl-L-methionine (AdoMet)- dependent methyltransferase (MTases) [].; GO: 0003824 catalytic activity; PDB: 2E5W_C 2ZSU_E 2O0L_B 2O05_B 2O06_B 2O07_B 3RW9_B 2PWP_A 2HTE_B 3RIE_B ....
Probab=97.31 E-value=0.0016 Score=70.14 Aligned_cols=112 Identities=17% Similarity=0.204 Sum_probs=75.6
Q ss_pred CCCCEEEEEcCccchHHHHHhcCCCCCceEEEEeCChHHHHHHHHHHhhhhhcccccCCCCCCCccEEEEEcCccccCC-
Q 002218 712 SCATTLVDFGCGSGSLLDSLLDYPTALEKIVGVDISQKSLSRAAKIIHSKLSKKLDAAVPCTDVKSAVLFDGSITVFDS- 790 (952)
Q Consensus 712 ~k~krVLDIGCGeG~ll~~LAr~g~~~~qVVGVDISeemLe~ArkrLsa~la~~~~~l~Pr~~~~nVtf~qGDa~dLpf- 790 (952)
..+++||=||-|.|..++.+.++. +..+|+.||+++..++.|++.+...... ...++++++.+|+..+-.
T Consensus 75 ~~p~~VLiiGgG~G~~~~ell~~~-~~~~i~~VEiD~~Vv~~a~~~f~~~~~~--------~~d~r~~i~~~Dg~~~l~~ 145 (246)
T PF01564_consen 75 PNPKRVLIIGGGDGGTARELLKHP-PVESITVVEIDPEVVELARKYFPEFSEG--------LDDPRVRIIIGDGRKFLKE 145 (246)
T ss_dssp SST-EEEEEESTTSHHHHHHTTST-T-SEEEEEES-HHHHHHHHHHTHHHHTT--------GGSTTEEEEESTHHHHHHT
T ss_pred CCcCceEEEcCCChhhhhhhhhcC-CcceEEEEecChHHHHHHHHhchhhccc--------cCCCceEEEEhhhHHHHHh
Confidence 368999999999999999999886 5689999999999999998765432111 134689999999976432
Q ss_pred CCC-CccEEEEccccccCChhH--HHHHHHHHHHccCCC-EEEEEe
Q 002218 791 RLH-GFDIGTCLEVIEHMEEDE--ASQFGNIVLSSFRPR-ILIVST 832 (952)
Q Consensus 791 ~d~-sFDVVVcieVIEHL~dD~--l~~L~eeI~RvLKPG-~LIIST 832 (952)
... .||+|+.--.-..-+... -..|.+.+.+.|+|+ ++++-.
T Consensus 146 ~~~~~yDvIi~D~~dp~~~~~~l~t~ef~~~~~~~L~~~Gv~v~~~ 191 (246)
T PF01564_consen 146 TQEEKYDVIIVDLTDPDGPAPNLFTREFYQLCKRRLKPDGVLVLQA 191 (246)
T ss_dssp SSST-EEEEEEESSSTTSCGGGGSSHHHHHHHHHHEEEEEEEEEEE
T ss_pred ccCCcccEEEEeCCCCCCCcccccCHHHHHHHHhhcCCCcEEEEEc
Confidence 234 899998732211111111 135556799999998 444443
No 208
>COG0116 Predicted N6-adenine-specific DNA methylase [DNA replication, recombination, and repair]
Probab=97.28 E-value=0.0019 Score=73.71 Aligned_cols=136 Identities=15% Similarity=0.114 Sum_probs=94.6
Q ss_pred hhhhcCCchhHHHHHHHHHHHhhcCCCCEEEEEcCccchHHHHHhcCCCCC-----------------------------
Q 002218 688 MEQALFSPPLSKQRVEYALQHIKESCATTLVDFGCGSGSLLDSLLDYPTAL----------------------------- 738 (952)
Q Consensus 688 ye~~~F~PPL~~QR~efVldlL~~~k~krVLDIGCGeG~ll~~LAr~g~~~----------------------------- 738 (952)
|......-||.+..-..++.+..-.++..++|-=||+|.++...|..+...
T Consensus 166 yR~~~g~ApLketLAaAil~lagw~~~~pl~DPmCGSGTi~IEAAl~~~niAPg~~R~~~f~~w~~~~~~lw~~~~~ea~ 245 (381)
T COG0116 166 YRVYDGPAPLKETLAAAILLLAGWKPDEPLLDPMCGSGTILIEAALIAANIAPGLNRRFGFEFWDWFDKDLWDKLREEAE 245 (381)
T ss_pred ccccCCCCCchHHHHHHHHHHcCCCCCCccccCCCCccHHHHHHHHhccccCCccccccchhhhhhccHHHHHHHHHHHH
Confidence 555555568888777777777766677899999999999998776554110
Q ss_pred --c-------eEEEEeCChHHHHHHHHHHhhhhhcccccCCCCCCCccEEEEEcCccccCCCCCCccEEEEccc-cccCC
Q 002218 739 --E-------KIVGVDISQKSLSRAAKIIHSKLSKKLDAAVPCTDVKSAVLFDGSITVFDSRLHGFDIGTCLEV-IEHME 808 (952)
Q Consensus 739 --~-------qVVGVDISeemLe~ArkrLsa~la~~~~~l~Pr~~~~nVtf~qGDa~dLpf~d~sFDVVVcieV-IEHL~ 808 (952)
. .++|+|+++.+|+.|+.+..+. +-...|+|.++|+..+..+...+|+|||+== =+-|.
T Consensus 246 ~~a~~~~~~~~~~G~Did~r~i~~Ak~NA~~A-----------Gv~d~I~f~~~d~~~l~~~~~~~gvvI~NPPYGeRlg 314 (381)
T COG0116 246 ERARRGKELPIIYGSDIDPRHIEGAKANARAA-----------GVGDLIEFKQADATDLKEPLEEYGVVISNPPYGERLG 314 (381)
T ss_pred HHHhhcCccceEEEecCCHHHHHHHHHHHHhc-----------CCCceEEEEEcchhhCCCCCCcCCEEEeCCCcchhcC
Confidence 1 3779999999999998876531 2345799999999998866688999999521 12222
Q ss_pred hh-----HHHHHHHHHHHccCCC-EEEEEecC
Q 002218 809 ED-----EASQFGNIVLSSFRPR-ILIVSTPN 834 (952)
Q Consensus 809 dD-----~l~~L~eeI~RvLKPG-~LIISTPN 834 (952)
.+ --..|.+.+.+.++-. ..|++++.
T Consensus 315 ~~~~v~~LY~~fg~~lk~~~~~ws~~v~tt~e 346 (381)
T COG0116 315 SEALVAKLYREFGRTLKRLLAGWSRYVFTTSE 346 (381)
T ss_pred ChhhHHHHHHHHHHHHHHHhcCCceEEEEccH
Confidence 22 1134555566666655 66666653
No 209
>KOG3178 consensus Hydroxyindole-O-methyltransferase and related SAM-dependent methyltransferases [General function prediction only]
Probab=97.27 E-value=0.0014 Score=73.78 Aligned_cols=145 Identities=18% Similarity=0.199 Sum_probs=98.4
Q ss_pred CCEEEEEcCccchHHHHHhcCCCCCceEEEEeCChHHHHHHHHHHhhhhhcccccCCCCCCCccEEEEEcCccccCCCCC
Q 002218 714 ATTLVDFGCGSGSLLDSLLDYPTALEKIVGVDISQKSLSRAAKIIHSKLSKKLDAAVPCTDVKSAVLFDGSITVFDSRLH 793 (952)
Q Consensus 714 ~krVLDIGCGeG~ll~~LAr~g~~~~qVVGVDISeemLe~ArkrLsa~la~~~~~l~Pr~~~~nVtf~qGDa~dLpf~d~ 793 (952)
....+|+|-|.|..+..+.... .+|-|++++...+..++..+ . +.|+.+-||..+-. +
T Consensus 178 v~~avDvGgGiG~v~k~ll~~f---p~ik~infdlp~v~~~a~~~---------------~-~gV~~v~gdmfq~~-P-- 235 (342)
T KOG3178|consen 178 VNVAVDVGGGIGRVLKNLLSKY---PHIKGINFDLPFVLAAAPYL---------------A-PGVEHVAGDMFQDT-P-- 235 (342)
T ss_pred CceEEEcCCcHhHHHHHHHHhC---CCCceeecCHHHHHhhhhhh---------------c-CCcceecccccccC-C--
Confidence 3789999999999999888866 46999999999888876643 1 34777778875542 2
Q ss_pred CccEEEEccccccCChhHHHHHHHHHHHccCCC-EEEEEe---cC-CchhHHHHhhccCccCCCCcchhhhccccccCCC
Q 002218 794 GFDIGTCLEVIEHMEEDEASQFGNIVLSSFRPR-ILIVST---PN-YEYNAILQKSSSTIQEDDPDEKTQLQSCKFRNHD 868 (952)
Q Consensus 794 sFDVVVcieVIEHL~dD~l~~L~eeI~RvLKPG-~LIIST---PN-~efN~lf~~L~~~ta~eYPde~~g~~~~~fRh~D 868 (952)
.-|+|++.+++||+.+++...|.+++...|+|| .+|+.. |. ..+......... .. ...-.-+..
T Consensus 236 ~~daI~mkWiLhdwtDedcvkiLknC~~sL~~~GkIiv~E~V~p~e~~~dd~~s~v~~----~~-------d~lm~~~~~ 304 (342)
T KOG3178|consen 236 KGDAIWMKWILHDWTDEDCVKILKNCKKSLPPGGKIIVVENVTPEEDKFDDIDSSVTR----DM-------DLLMLTQTS 304 (342)
T ss_pred CcCeEEEEeecccCChHHHHHHHHHHHHhCCCCCEEEEEeccCCCCCCccccccceee----hh-------HHHHHHHhc
Confidence 346999999999999999999999999999998 555532 32 111111110000 00 000111122
Q ss_pred CccccCHHHHHHHHHHHHHHcCcEEEE
Q 002218 869 HKFEWTRDQFNCWATELAARHNYSVEF 895 (952)
Q Consensus 869 HkFEWTReEFqsWae~La~q~GYsVef 895 (952)
-..+.+.+||+ .++.+.||.+..
T Consensus 305 ~Gkert~~e~q----~l~~~~gF~~~~ 327 (342)
T KOG3178|consen 305 GGKERTLKEFQ----ALLPEEGFPVCM 327 (342)
T ss_pred cceeccHHHHH----hcchhhcCceeE
Confidence 24567889998 577888998743
No 210
>KOG2904 consensus Predicted methyltransferase [General function prediction only]
Probab=97.25 E-value=0.0014 Score=71.98 Aligned_cols=94 Identities=18% Similarity=0.183 Sum_probs=65.4
Q ss_pred hhHHHHHHHHHHHhhcC---CCCEEEEEcCccchHHHHHhcCCCCCceEEEEeCChHHHHHHHHHHhhhhhcccccCCCC
Q 002218 696 PLSKQRVEYALQHIKES---CATTLVDFGCGSGSLLDSLLDYPTALEKIVGVDISQKSLSRAAKIIHSKLSKKLDAAVPC 772 (952)
Q Consensus 696 PL~~QR~efVldlL~~~---k~krVLDIGCGeG~ll~~LAr~g~~~~qVVGVDISeemLe~ArkrLsa~la~~~~~l~Pr 772 (952)
|-.+.-++++.+.+... ++..|||+|||+|..+..|+..- +...|++||.|+.++..|.++.....
T Consensus 128 pETEE~V~~Vid~~~~~~~~~~~~ildlgtGSGaIslsll~~L-~~~~v~AiD~S~~Ai~La~eN~qr~~---------- 196 (328)
T KOG2904|consen 128 PETEEWVEAVIDALNNSEHSKHTHILDLGTGSGAISLSLLHGL-PQCTVTAIDVSKAAIKLAKENAQRLK---------- 196 (328)
T ss_pred ccHHHHHHHHHHHHhhhhhcccceEEEecCCccHHHHHHHhcC-CCceEEEEeccHHHHHHHHHHHHHHh----------
Confidence 34455566777666543 45579999999999999888765 36899999999999999998865321
Q ss_pred CCCccEEEEE----cCccc-cCCCCCCccEEEEc
Q 002218 773 TDVKSAVLFD----GSITV-FDSRLHGFDIGTCL 801 (952)
Q Consensus 773 ~~~~nVtf~q----GDa~d-Lpf~d~sFDVVVci 801 (952)
....+..++ +|..+ .+...+..|+++|+
T Consensus 197 -l~g~i~v~~~~me~d~~~~~~l~~~~~dllvsN 229 (328)
T KOG2904|consen 197 -LSGRIEVIHNIMESDASDEHPLLEGKIDLLVSN 229 (328)
T ss_pred -hcCceEEEecccccccccccccccCceeEEecC
Confidence 112455553 33322 22346789999985
No 211
>COG2520 Predicted methyltransferase [General function prediction only]
Probab=97.19 E-value=0.0018 Score=73.19 Aligned_cols=117 Identities=19% Similarity=0.145 Sum_probs=90.2
Q ss_pred hhhhcCCchhHHHHHHHHHHHhhcCCCCEEEEEcCccchHHHHHhcCCCCCceEEEEeCChHHHHHHHHHHhhhhhcccc
Q 002218 688 MEQALFSPPLSKQRVEYALQHIKESCATTLVDFGCGSGSLLDSLLDYPTALEKIVGVDISQKSLSRAAKIIHSKLSKKLD 767 (952)
Q Consensus 688 ye~~~F~PPL~~QR~efVldlL~~~k~krVLDIGCGeG~ll~~LAr~g~~~~qVVGVDISeemLe~ArkrLsa~la~~~~ 767 (952)
....+|+|.+...|...+... . .+.+|+|.=+|-|.|+..+|+.+. ..|+++|+++.+++..++++.-+
T Consensus 166 ~~Kv~Fsprl~~ER~Rva~~v-~--~GE~V~DmFAGVGpfsi~~Ak~g~--~~V~A~diNP~A~~~L~eNi~LN------ 234 (341)
T COG2520 166 VAKVYFSPRLSTERARVAELV-K--EGETVLDMFAGVGPFSIPIAKKGR--PKVYAIDINPDAVEYLKENIRLN------ 234 (341)
T ss_pred hHHeEECCCchHHHHHHHhhh-c--CCCEEEEccCCcccchhhhhhcCC--ceEEEEecCHHHHHHHHHHHHhc------
Confidence 345789999999998765433 2 488999999999999999999984 34999999999999999887521
Q ss_pred cCCCCCCCccEEEEEcCccccCCCCCCccEEEEccccccCChhHHHHHHHHHHHccCCC
Q 002218 768 AAVPCTDVKSAVLFDGSITVFDSRLHGFDIGTCLEVIEHMEEDEASQFGNIVLSSFRPR 826 (952)
Q Consensus 768 ~l~Pr~~~~nVtf~qGDa~dLpf~d~sFDVVVcieVIEHL~dD~l~~L~eeI~RvLKPG 826 (952)
.-...+..++||+.+.....+.||-|++...- ....|.....+.+++|
T Consensus 235 -----~v~~~v~~i~gD~rev~~~~~~aDrIim~~p~------~a~~fl~~A~~~~k~~ 282 (341)
T COG2520 235 -----KVEGRVEPILGDAREVAPELGVADRIIMGLPK------SAHEFLPLALELLKDG 282 (341)
T ss_pred -----CccceeeEEeccHHHhhhccccCCEEEeCCCC------cchhhHHHHHHHhhcC
Confidence 11224899999999998877899999886542 1123344577778887
No 212
>COG1092 Predicted SAM-dependent methyltransferases [General function prediction only]
Probab=97.18 E-value=0.011 Score=68.22 Aligned_cols=108 Identities=15% Similarity=0.154 Sum_probs=77.9
Q ss_pred CCCEEEEEcCccchHHHHHhcCCCCCceEEEEeCChHHHHHHHHHHhhhhhcccccCCCCCCCccEEEEEcCccccC---
Q 002218 713 CATTLVDFGCGSGSLLDSLLDYPTALEKIVGVDISQKSLSRAAKIIHSKLSKKLDAAVPCTDVKSAVLFDGSITVFD--- 789 (952)
Q Consensus 713 k~krVLDIGCGeG~ll~~LAr~g~~~~qVVGVDISeemLe~ArkrLsa~la~~~~~l~Pr~~~~nVtf~qGDa~dLp--- 789 (952)
++++|||+=|=||.++...+..|. .+|++||+|..+|+.|++++. +.+ -...++.|+++|+.++-
T Consensus 217 ~GkrvLNlFsYTGgfSv~Aa~gGA--~~vt~VD~S~~al~~a~~N~~--LNg--------~~~~~~~~i~~Dvf~~l~~~ 284 (393)
T COG1092 217 AGKRVLNLFSYTGGFSVHAALGGA--SEVTSVDLSKRALEWARENAE--LNG--------LDGDRHRFIVGDVFKWLRKA 284 (393)
T ss_pred cCCeEEEecccCcHHHHHHHhcCC--CceEEEeccHHHHHHHHHHHH--hcC--------CCccceeeehhhHHHHHHHH
Confidence 489999999999999999998883 599999999999999999864 221 12346899999997642
Q ss_pred -CCCCCccEEEEc--------cccccCChhHHHHHHHHHHHccCCC-EEEEEec
Q 002218 790 -SRLHGFDIGTCL--------EVIEHMEEDEASQFGNIVLSSFRPR-ILIVSTP 833 (952)
Q Consensus 790 -f~d~sFDVVVci--------eVIEHL~dD~l~~L~eeI~RvLKPG-~LIISTP 833 (952)
-+...||+|+.- ....-.. ..-..+.....++|+|| .++++|-
T Consensus 285 ~~~g~~fDlIilDPPsF~r~k~~~~~~~-rdy~~l~~~~~~iL~pgG~l~~~s~ 337 (393)
T COG1092 285 ERRGEKFDLIILDPPSFARSKKQEFSAQ-RDYKDLNDLALRLLAPGGTLVTSSC 337 (393)
T ss_pred HhcCCcccEEEECCcccccCcccchhHH-HHHHHHHHHHHHHcCCCCEEEEEec
Confidence 245589999971 1111111 22234556789999999 5555543
No 213
>PF02384 N6_Mtase: N-6 DNA Methylase; InterPro: IPR003356 This domain is fpound in N-6 adenine-specific DNA methylase (2.1.1.72 from EC) from Type I and Type IC restriction systems. These enzymes are responsible for the methylation of specific DNA sequences in order to prevent the host from digesting its own genome via its restriction enzymes. These methylases have the same sequence specificity as their corresponding restriction enzymes. The type I restriction and modification system is composed of three polypeptides R, M and S. The M and S subunits together form a methyltransferase that methylates two adenine residues in complementary strands of a bipartite DNA recognition sequence. In the presence of the R subunit, the complex can also act as an endonuclease, binding to the same target sequence but cutting the DNA some distance from this site. Whether the DNA is cut or modified depends on the methylation state of the target sequence. When the target site is unmodified, the DNA is cut. When the target site is hemimethylated, the complex acts as a maintenance methyltransferase, modifying the DNA so that both strands become methylated.; GO: 0003677 DNA binding, 0008170 N-methyltransferase activity, 0006306 DNA methylation; PDB: 2F8L_A 2Y7C_C 2Y7H_C 2AR0_B 3KHK_A 3LKD_A 2OKC_B.
Probab=97.18 E-value=0.0024 Score=69.87 Aligned_cols=122 Identities=20% Similarity=0.277 Sum_probs=75.3
Q ss_pred HHHHHHhhcCCCCEEEEEcCccchHHHHHhcCC------CCCceEEEEeCChHHHHHHHHHHhhhhhcccccCCCCCCCc
Q 002218 703 EYALQHIKESCATTLVDFGCGSGSLLDSLLDYP------TALEKIVGVDISQKSLSRAAKIIHSKLSKKLDAAVPCTDVK 776 (952)
Q Consensus 703 efVldlL~~~k~krVLDIGCGeG~ll~~LAr~g------~~~~qVVGVDISeemLe~ArkrLsa~la~~~~~l~Pr~~~~ 776 (952)
+++.+++...++.+|+|-.||+|.|+..+.++- ....+++|+|+++.++..|+-++.-. . ....
T Consensus 36 ~l~~~~~~~~~~~~VlDPacGsG~fL~~~~~~i~~~~~~~~~~~i~G~ei~~~~~~la~~nl~l~--~--------~~~~ 105 (311)
T PF02384_consen 36 DLMVKLLNPKKGDSVLDPACGSGGFLVAAMEYIKEKRNKIKEINIYGIEIDPEAVALAKLNLLLH--G--------IDNS 105 (311)
T ss_dssp HHHHHHHTT-TTEEEEETT-TTSHHHHHHHHHHHTCHHHHCCEEEEEEES-HHHHHHHHHHHHHT--T--------HHCB
T ss_pred HHHHhhhhccccceeechhhhHHHHHHHHHHhhcccccccccceeEeecCcHHHHHHHHhhhhhh--c--------cccc
Confidence 367777777777899999999999998776520 01278999999999999987654211 0 0122
Q ss_pred cEEEEEcCccccCCC--CCCccEEEEcc---cccc----CC------------hhHHHHHHHHHHHccCCC-EEEEEecC
Q 002218 777 SAVLFDGSITVFDSR--LHGFDIGTCLE---VIEH----ME------------EDEASQFGNIVLSSFRPR-ILIVSTPN 834 (952)
Q Consensus 777 nVtf~qGDa~dLpf~--d~sFDVVVcie---VIEH----L~------------dD~l~~L~eeI~RvLKPG-~LIISTPN 834 (952)
...+..+|....+.. ...||+|++.= ..++ +. ....-.|...+.+.|++| .+++.+|+
T Consensus 106 ~~~i~~~d~l~~~~~~~~~~~D~ii~NPPf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Fi~~~l~~Lk~~G~~~~Ilp~ 185 (311)
T PF02384_consen 106 NINIIQGDSLENDKFIKNQKFDVIIGNPPFGSKEWKDEELEKDERFKKYFPPKSNAEYAFIEHALSLLKPGGRAAIILPN 185 (311)
T ss_dssp GCEEEES-TTTSHSCTST--EEEEEEE--CTCES-STGGGCTTCCCTTCSSSTTEHHHHHHHHHHHTEEEEEEEEEEEEH
T ss_pred cccccccccccccccccccccccccCCCCccccccccccccccccccccCCCccchhhhhHHHHHhhcccccceeEEecc
Confidence 345778887654433 47899999942 1101 00 011124667799999997 77777775
No 214
>PF07942 N2227: N2227-like protein; InterPro: IPR012901 This family features sequences that are similar to a region of hypothetical yeast gene product N2227 (P53934 from SWISSPROT). This is thought to be expressed during meiosis and may be involved in the defence response to stressful conditions [].
Probab=97.12 E-value=0.0095 Score=65.55 Aligned_cols=155 Identities=13% Similarity=0.150 Sum_probs=101.2
Q ss_pred CCCEEEEEcCccchHHHHHhcCCCCCceEEEEeCChHHHHHHHHHHhhh--hhcccc---------------c----CCC
Q 002218 713 CATTLVDFGCGSGSLLDSLLDYPTALEKIVGVDISQKSLSRAAKIIHSK--LSKKLD---------------A----AVP 771 (952)
Q Consensus 713 k~krVLDIGCGeG~ll~~LAr~g~~~~qVVGVDISeemLe~ArkrLsa~--la~~~~---------------~----l~P 771 (952)
...+||--|||-|+++..++..| ..+.|.|.|--|+-...-.+... ...... . ..|
T Consensus 56 ~~~~VLVPGsGLGRLa~Eia~~G---~~~~gnE~S~~Mll~s~fiLn~~~~~~~~~I~Pf~~~~sn~~~~~dqlr~v~iP 132 (270)
T PF07942_consen 56 SKIRVLVPGSGLGRLAWEIAKLG---YAVQGNEFSYFMLLASNFILNHCSQPNQFTIYPFVHSFSNQKSREDQLRPVRIP 132 (270)
T ss_pred CccEEEEcCCCcchHHHHHhhcc---ceEEEEEchHHHHHHHHHHHcccCCCCcEEEecceecccCCCCHHHhCCceEeC
Confidence 45799999999999999999998 89999999999986654433310 000000 0 111
Q ss_pred ----C---CCCccEEEEEcCccccCCCC---CCccEEEEccccccCChhHHHHHHHHHHHccCCCEEEEEecCCchhHHH
Q 002218 772 ----C---TDVKSAVLFDGSITVFDSRL---HGFDIGTCLEVIEHMEEDEASQFGNIVLSSFRPRILIVSTPNYEYNAIL 841 (952)
Q Consensus 772 ----r---~~~~nVtf~qGDa~dLpf~d---~sFDVVVcieVIEHL~dD~l~~L~eeI~RvLKPG~LIISTPN~efN~lf 841 (952)
. ....++.+..||..+..... +.||+|+..+.|.--. ... .+.+.|.++||||.+.|- +.|++
T Consensus 133 Dv~p~~~~~~~~~~sm~aGDF~e~y~~~~~~~~~d~VvT~FFIDTA~-Ni~-~Yi~tI~~lLkpgG~WIN-----~GPLl 205 (270)
T PF07942_consen 133 DVDPSSELPSPSNLSMCAGDFLEVYGPDENKGSFDVVVTCFFIDTAE-NII-EYIETIEHLLKPGGYWIN-----FGPLL 205 (270)
T ss_pred CcCcccccCCCCceeEecCccEEecCCcccCCcccEEEEEEEeechH-HHH-HHHHHHHHHhccCCEEEe-----cCCcc
Confidence 1 12346888889988876555 7899999987776543 333 445679999999954442 12221
Q ss_pred HhhccCccCCCCcchhhhccccc-cCCCCccccCHHHHHHHHHHHHHHcCcEEEEEee
Q 002218 842 QKSSSTIQEDDPDEKTQLQSCKF-RNHDHKFEWTRDQFNCWATELAARHNYSVEFSGV 898 (952)
Q Consensus 842 ~~L~~~ta~eYPde~~g~~~~~f-Rh~DHkFEWTReEFqsWae~La~q~GYsVefsGV 898 (952)
-.. .+. ...+-..+++.+|+. .++.+.||.++..-.
T Consensus 206 yh~-----------------~~~~~~~~~sveLs~eEi~----~l~~~~GF~~~~~~~ 242 (270)
T PF07942_consen 206 YHF-----------------EPMSIPNEMSVELSLEEIK----ELIEKLGFEIEKEES 242 (270)
T ss_pred ccC-----------------CCCCCCCCcccCCCHHHHH----HHHHHCCCEEEEEEE
Confidence 110 111 112233789999999 678889999865443
No 215
>smart00358 DSRM Double-stranded RNA binding motif.
Probab=97.10 E-value=0.0016 Score=54.74 Aligned_cols=57 Identities=26% Similarity=0.332 Sum_probs=44.2
Q ss_pred HhccCceeEEEeeeeccccCCCCccccCCCCCceEEEeeecCCceeeeccccccchHHHHHHHHHHHHc
Q 002218 24 QKFGRNAQFTVDEVQDVVQNGCPGLAIPQKGPCLYRCSLQLPEFSVVSETFKKKKDAEQSAAEKALEKL 92 (952)
Q Consensus 24 q~~g~~~~y~~~ev~~~~~~~~~~~~~~q~~~~~~~c~l~lp~~~v~~~~~~~kkdaeq~aa~~al~kl 92 (952)
|+.|-.-.|.+.++.. |...| .|.|.+.+.+-.+.+|.-+.||+|||.||+.||+.|
T Consensus 10 ~~~~~~~~y~~~~~~g-----------~~~~~-~f~~~v~i~~~~~~~g~g~sKk~Ak~~AA~~al~~L 66 (67)
T smart00358 10 QKRGLPPEYELVKEEG-----------PDHAP-RFTVTVKVGGEYTGEGEGSSKKEAKQRAAEAALRSL 66 (67)
T ss_pred HHCCCCCEEEEEeeeC-----------CCCCC-cEEEEEEECCEEEEEeccCCHHHHHHHHHHHHHHhc
Confidence 5566567887765432 22223 899999998877778999999999999999999987
No 216
>PF00398 RrnaAD: Ribosomal RNA adenine dimethylase; InterPro: IPR001737 This family of proteins include rRNA adenine dimethylases (e.g. KsgA) and the Erythromycin resistance methylases (Erm). The bacterial enzyme KsgA catalyses the transfer of a total of four methyl groups from S-adenosyl-l-methionine (S-AdoMet) to two adjacent adenosine bases in 16S rRNA. This enzyme and the resulting modified adenosine bases appear to be conserved in all species of eubacteria, eukaryotes, and archaea, and in eukaryotic organelles. Bacterial resistance to the aminoglycoside antibiotic kasugamycin involves inactivation of KsgA and resulting loss of the dimethylations, with modest consequences to the overall fitness of the organism. In contrast, the yeast ortholog, Dim1, is essential. In Saccharomyces cerevisiae (Baker's yeast), and presumably in other eukaryotes, the enzyme performs a vital role in pre-rRNA processing in addition to its methylating activity. The best conserved region in these enzymes is located in the N-terminal section and corresponds to a region that is probably involved in S-adenosyl methionine (SAM) binding domain. The crystal structure of KsgA from Escherichia coli has been solved to a resolution of 2.1A. It bears a strong similarity to the crystal structure of ErmC' from Bacillus stearothermophilus and a lesser similarity to the yeast mitochondrial transcription factor, sc-mtTFB []. The Erm family of RNA methyltransferases, which methylate a single adenosine base in 23S rRNA confer resistance to the MLS-B group of antibiotics. Despite their sequence similarity, the two enzyme families have strikingly different levels of regulation that remain to be elucidated. Other orthologs, of this family include the yeast and Homo sapiens (Human) mitochondrial transcription factors (MTF1 and h-mtTFB respectively), which are nuclear encoded []. Human-mtTFB is able to stimulate transcription in vitro independently of its S-adenosylmethionine binding and rRNA methyltransferase activity [].; GO: 0000179 rRNA (adenine-N6,N6-)-dimethyltransferase activity, 0008649 rRNA methyltransferase activity, 0000154 rRNA modification; PDB: 3FTF_A 3R9X_B 3FTE_A 3FTC_A 3FTD_A 3GRY_A 3FYC_A 3GRU_A 3FYD_A 3GRV_A ....
Probab=97.09 E-value=0.0047 Score=66.71 Aligned_cols=113 Identities=12% Similarity=0.149 Sum_probs=78.4
Q ss_pred HHHHHHHHHHhhcCCCCEEEEEcCccchHHHHHhcCCCCCceEEEEeCChHHHHHHHHHHhhhhhcccccCCCCCCCccE
Q 002218 699 KQRVEYALQHIKESCATTLVDFGCGSGSLLDSLLDYPTALEKIVGVDISQKSLSRAAKIIHSKLSKKLDAAVPCTDVKSA 778 (952)
Q Consensus 699 ~QR~efVldlL~~~k~krVLDIGCGeG~ll~~LAr~g~~~~qVVGVDISeemLe~ArkrLsa~la~~~~~l~Pr~~~~nV 778 (952)
+.-.+.+++.+...++..|||||.|.|.++..|++.+ .++++||+++.+++..++++. ...++
T Consensus 16 ~~~~~~Iv~~~~~~~~~~VlEiGpG~G~lT~~L~~~~---~~v~~vE~d~~~~~~L~~~~~--------------~~~~~ 78 (262)
T PF00398_consen 16 PNIADKIVDALDLSEGDTVLEIGPGPGALTRELLKRG---KRVIAVEIDPDLAKHLKERFA--------------SNPNV 78 (262)
T ss_dssp HHHHHHHHHHHTCGTTSEEEEESSTTSCCHHHHHHHS---SEEEEEESSHHHHHHHHHHCT--------------TCSSE
T ss_pred HHHHHHHHHhcCCCCCCEEEEeCCCCccchhhHhccc---CcceeecCcHhHHHHHHHHhh--------------hcccc
Confidence 3444567777777788999999999999999999988 799999999999988877542 23589
Q ss_pred EEEEcCccccCCCC---CCccEEEEccccccCChhHHHHHHHHHHHccCCC--EEEEEec
Q 002218 779 VLFDGSITVFDSRL---HGFDIGTCLEVIEHMEEDEASQFGNIVLSSFRPR--ILIVSTP 833 (952)
Q Consensus 779 tf~qGDa~dLpf~d---~sFDVVVcieVIEHL~dD~l~~L~eeI~RvLKPG--~LIISTP 833 (952)
+++.+|+.+++... .....|+++-- .++.. .+...+...-+.| .+++..+
T Consensus 79 ~vi~~D~l~~~~~~~~~~~~~~vv~NlP-y~is~----~il~~ll~~~~~g~~~~~l~vq 133 (262)
T PF00398_consen 79 EVINGDFLKWDLYDLLKNQPLLVVGNLP-YNISS----PILRKLLELYRFGRVRMVLMVQ 133 (262)
T ss_dssp EEEES-TTTSCGGGHCSSSEEEEEEEET-GTGHH----HHHHHHHHHGGGCEEEEEEEEE
T ss_pred eeeecchhccccHHhhcCCceEEEEEec-ccchH----HHHHHHhhcccccccceEEEEe
Confidence 99999999887654 34455555422 24432 2223355444556 4445444
No 217
>TIGR02987 met_A_Alw26 type II restriction m6 adenine DNA methyltransferase, Alw26I/Eco31I/Esp3I family. Members of this family are the m6-adenine DNA methyltransferase protein, or domain of a fusion protein that also carries m5 cytosine methyltransferase activity, of type II restriction systems of the Alw26I/Eco31I/Esp3I family. A methyltransferase of this family is alway accompanied by a type II restriction endonuclease from the Alw26I/Eco31I/Esp3I family (TIGR02986) and by an adenine-specific modification methyltransferase. Members of this family are unusual in that regions of similarity to homologs outside this family are circularly permuted.
Probab=97.04 E-value=0.0035 Score=73.96 Aligned_cols=47 Identities=32% Similarity=0.458 Sum_probs=37.7
Q ss_pred CCCEEEEEcCccchHHHHHhcCCC-------CCceEEEEeCChHHHHHHHHHHh
Q 002218 713 CATTLVDFGCGSGSLLDSLLDYPT-------ALEKIVGVDISQKSLSRAAKIIH 759 (952)
Q Consensus 713 k~krVLDIGCGeG~ll~~LAr~g~-------~~~qVVGVDISeemLe~ArkrLs 759 (952)
...+|||.|||+|.++..+++... -..+++|+|+++.++..|+.++.
T Consensus 31 ~~~~ilDP~cGsG~fl~~~~~~~~~~~~~~~~~~~i~g~DId~~a~~~a~~~l~ 84 (524)
T TIGR02987 31 TKTKIIDPCCGDGRLIAALLKKNEEINYFKEVELNIYFADIDKTLLKRAKKLLG 84 (524)
T ss_pred cceEEEeCCCCccHHHHHHHHHHHhcCCcccceeeeeeechhHHHHHHHHHHHh
Confidence 456999999999999987765331 12578999999999999988764
No 218
>PF04672 Methyltransf_19: S-adenosyl methyltransferase; InterPro: IPR006764 This is a family of uncharacterised proteins.; PDB: 3GIW_A 3GO4_A 2QE6_A.
Probab=96.90 E-value=0.0051 Score=67.52 Aligned_cols=130 Identities=12% Similarity=0.162 Sum_probs=76.1
Q ss_pred hHHHHHHHHHH---HhhcC-CCCEEEEEcCc--cchHHHHHhcCCCCCceEEEEeCChHHHHHHHHHHhhhhhcccccCC
Q 002218 697 LSKQRVEYALQ---HIKES-CATTLVDFGCG--SGSLLDSLLDYPTALEKIVGVDISQKSLSRAAKIIHSKLSKKLDAAV 770 (952)
Q Consensus 697 L~~QR~efVld---lL~~~-k~krVLDIGCG--eG~ll~~LAr~g~~~~qVVGVDISeemLe~ArkrLsa~la~~~~~l~ 770 (952)
+...-+.|+.. .+... .....|||||| +-.....+++...+..+|+-||+++-.+..++..+...
T Consensus 48 ~ar~nR~Fl~RaVr~la~~~GIrQFLDlGsGlPT~~nvHevAq~~~P~aRVVYVD~DPvv~ah~ralL~~~--------- 118 (267)
T PF04672_consen 48 AARANRAFLRRAVRYLAEEAGIRQFLDLGSGLPTAGNVHEVAQRVAPDARVVYVDNDPVVLAHARALLADN--------- 118 (267)
T ss_dssp HHHHHHHHHHHHHHHHHCTT---EEEEET--S--SS-HHHHHHHH-TT-EEEEEESSHHHHHCCHHHHTT----------
T ss_pred HHHHHHHHHHHHHHHHHHhcCcceEEEcccCCCCCCCHhHHHHhhCCCceEEEECCCchHHHHHHhhhcCC---------
Confidence 33444455443 33333 66799999999 44456667665456699999999999999998776421
Q ss_pred CCCCCccEEEEEcCccccCCC------CCCcc-----EEEEccccccCCh-hHHHHHHHHHHHccCCC-EEEEEecCCch
Q 002218 771 PCTDVKSAVLFDGSITVFDSR------LHGFD-----IGTCLEVIEHMEE-DEASQFGNIVLSSFRPR-ILIVSTPNYEY 837 (952)
Q Consensus 771 Pr~~~~nVtf~qGDa~dLpf~------d~sFD-----VVVcieVIEHL~d-D~l~~L~eeI~RvLKPG-~LIISTPN~ef 837 (952)
......++++|+.+...- .+-+| .++...++||+++ ++...+...+...|.|| .++|+-...+.
T Consensus 119 ---~~g~t~~v~aD~r~p~~iL~~p~~~~~lD~~rPVavll~~vLh~v~D~~dp~~iv~~l~d~lapGS~L~ish~t~d~ 195 (267)
T PF04672_consen 119 ---PRGRTAYVQADLRDPEAILAHPEVRGLLDFDRPVAVLLVAVLHFVPDDDDPAGIVARLRDALAPGSYLAISHATDDG 195 (267)
T ss_dssp ---TTSEEEEEE--TT-HHHHHCSHHHHCC--TTS--EEEECT-GGGS-CGCTHHHHHHHHHCCS-TT-EEEEEEEB-TT
T ss_pred ---CCccEEEEeCCCCCHHHHhcCHHHHhcCCCCCCeeeeeeeeeccCCCccCHHHHHHHHHHhCCCCceEEEEecCCCC
Confidence 111388999999874310 12233 6888899999986 34455566799999999 88887766554
Q ss_pred h
Q 002218 838 N 838 (952)
Q Consensus 838 N 838 (952)
.
T Consensus 196 ~ 196 (267)
T PF04672_consen 196 A 196 (267)
T ss_dssp S
T ss_pred C
Confidence 4
No 219
>PF02527 GidB: rRNA small subunit methyltransferase G; InterPro: IPR003682 This entry represents a rRNA small subunit methyltransferase G. Previously identified as a glucose-inhibited division protein B that appears to be present and in a single copy in all complete eubacterial genomes so far sequenced. Specifically methylates the N7 position of a guanosine in 16S rRNA [, , ].; GO: 0008649 rRNA methyltransferase activity, 0006364 rRNA processing, 0005737 cytoplasm; PDB: 1XDZ_A 3G88_A 3G8A_B 3G89_B 3G8B_B 1JSX_A.
Probab=96.87 E-value=0.0038 Score=64.93 Aligned_cols=93 Identities=14% Similarity=0.151 Sum_probs=68.0
Q ss_pred EEEEEcCccchHHHHHhcCCCCCceEEEEeCChHHHHHHHHHHhhhhhcccccCCCCCCCccEEEEEcCccccCCCCCCc
Q 002218 716 TLVDFGCGSGSLLDSLLDYPTALEKIVGVDISQKSLSRAAKIIHSKLSKKLDAAVPCTDVKSAVLFDGSITVFDSRLHGF 795 (952)
Q Consensus 716 rVLDIGCGeG~ll~~LAr~g~~~~qVVGVDISeemLe~ArkrLsa~la~~~~~l~Pr~~~~nVtf~qGDa~dLpf~d~sF 795 (952)
+++|||.|.|.-+..|+=.. |..+++.+|....-+..-+.-... -+..+++++++.+++ ......|
T Consensus 51 ~~lDiGSGaGfPGipLaI~~-p~~~~~LvEs~~KK~~FL~~~~~~------------L~L~nv~v~~~R~E~-~~~~~~f 116 (184)
T PF02527_consen 51 KVLDIGSGAGFPGIPLAIAR-PDLQVTLVESVGKKVAFLKEVVRE------------LGLSNVEVINGRAEE-PEYRESF 116 (184)
T ss_dssp EEEEETSTTTTTHHHHHHH--TTSEEEEEESSHHHHHHHHHHHHH------------HT-SSEEEEES-HHH-TTTTT-E
T ss_pred eEEecCCCCCChhHHHHHhC-CCCcEEEEeCCchHHHHHHHHHHH------------hCCCCEEEEEeeecc-cccCCCc
Confidence 89999999999998877554 457899999998765554433221 145689999999998 4456789
Q ss_pred cEEEEccccccCChhHHHHHHHHHHHccCCCEE
Q 002218 796 DIGTCLEVIEHMEEDEASQFGNIVLSSFRPRIL 828 (952)
Q Consensus 796 DVVVcieVIEHL~dD~l~~L~eeI~RvLKPG~L 828 (952)
|+|++-.| .+...+.+.+..++++|..
T Consensus 117 d~v~aRAv------~~l~~l~~~~~~~l~~~G~ 143 (184)
T PF02527_consen 117 DVVTARAV------APLDKLLELARPLLKPGGR 143 (184)
T ss_dssp EEEEEESS------SSHHHHHHHHGGGEEEEEE
T ss_pred cEEEeehh------cCHHHHHHHHHHhcCCCCE
Confidence 99999887 4445666778899999833
No 220
>PF10672 Methyltrans_SAM: S-adenosylmethionine-dependent methyltransferase; InterPro: IPR019614 Members of this entry are S-adenosylmethionine-dependent methyltransferases from gamma-proteobacterial species. The diversity in the roles of methylation is matched by the almost bewildering number of methyltransferase enzymes that catalyse the methylation reaction. Although several classes of methyltransferase enzymes are known, the great majority of methylation reactions are catalysed by the S-adenosylmethionine-dependent methyltransferases. SAM (S-adenosylmethionine, also known as AdoMet) is well known as the methyl donor for the majority of methyltransferases that modify DNA, RNA, histones and other proteins, dictating replicational, transcriptional and translational fidelity, mismatch repair, chromatin modelling, epigenetic modifications and imprinting [].; GO: 0008168 methyltransferase activity; PDB: 2IGT_B 1WXX_A 1WXW_D 2CWW_B 2AS0_B 3V8V_B 3V97_A 3C0K_A 2B78_A 3LDF_A.
Probab=96.84 E-value=0.025 Score=62.80 Aligned_cols=139 Identities=14% Similarity=0.140 Sum_probs=85.3
Q ss_pred cceeeeecccCCChhhhhhhhcCCchhHHHHHHHHHHHhhcCCCCEEEEEcCccchHHHHHhcCCCCCceEEEEeCChHH
Q 002218 671 LEYHITLLRVTEPPEDRMEQALFSPPLSKQRVEYALQHIKESCATTLVDFGCGSGSLLDSLLDYPTALEKIVGVDISQKS 750 (952)
Q Consensus 671 LEyyI~LL~v~ep~EeRye~~~F~PPL~~QR~efVldlL~~~k~krVLDIGCGeG~ll~~LAr~g~~~~qVVGVDISeem 750 (952)
+.|.+++...+. .+|+..-.+.|. ++.+. .++++|||+=|=+|.|+...+..|. .+|++||.|..+
T Consensus 93 l~f~v~l~~gqk--------tGlFlDqR~nR~-~v~~~---~~gkrvLnlFsYTGgfsv~Aa~gGA--~~v~~VD~S~~a 158 (286)
T PF10672_consen 93 LKFRVDLTDGQK--------TGLFLDQRENRK-WVRKY---AKGKRVLNLFSYTGGFSVAAAAGGA--KEVVSVDSSKRA 158 (286)
T ss_dssp EEEEEESSSSSS--------TSS-GGGHHHHH-HHHHH---CTTCEEEEET-TTTHHHHHHHHTTE--SEEEEEES-HHH
T ss_pred EEEEEEcCCCCc--------ceEcHHHHhhHH-HHHHH---cCCCceEEecCCCCHHHHHHHHCCC--CEEEEEeCCHHH
Confidence 566666654443 334443444443 44443 3678999999999999998887773 689999999999
Q ss_pred HHHHHHHHhhhhhcccccCCCCCCCccEEEEEcCccccCC---CCCCccEEEEc---cc--cccCChhHHHHHHHHHHHc
Q 002218 751 LSRAAKIIHSKLSKKLDAAVPCTDVKSAVLFDGSITVFDS---RLHGFDIGTCL---EV--IEHMEEDEASQFGNIVLSS 822 (952)
Q Consensus 751 Le~ArkrLsa~la~~~~~l~Pr~~~~nVtf~qGDa~dLpf---~d~sFDVVVci---eV--IEHL~dD~l~~L~eeI~Rv 822 (952)
|+.|++++.-. + -...+++++++|+.+.-. ..+.||+||+- +. -..+..+- ..+...+.++
T Consensus 159 l~~a~~N~~lN--g--------~~~~~~~~~~~Dvf~~l~~~~~~~~fD~IIlDPPsF~k~~~~~~~~y-~~L~~~a~~l 227 (286)
T PF10672_consen 159 LEWAKENAALN--G--------LDLDRHRFIQGDVFKFLKRLKKGGRFDLIILDPPSFAKSKFDLERDY-KKLLRRAMKL 227 (286)
T ss_dssp HHHHHHHHHHT--T---------CCTCEEEEES-HHHHHHHHHHTT-EEEEEE--SSEESSTCEHHHHH-HHHHHHHHHT
T ss_pred HHHHHHHHHHc--C--------CCccceEEEecCHHHHHHHHhcCCCCCEEEECCCCCCCCHHHHHHHH-HHHHHHHHHh
Confidence 99999886521 1 123479999999976321 34689999981 10 01112222 3444568899
Q ss_pred cCCCEEEEEecC
Q 002218 823 FRPRILIVSTPN 834 (952)
Q Consensus 823 LKPG~LIISTPN 834 (952)
|+||.++++.-|
T Consensus 228 l~~gG~l~~~sc 239 (286)
T PF10672_consen 228 LKPGGLLLTCSC 239 (286)
T ss_dssp EEEEEEEEEEE-
T ss_pred cCCCCEEEEEcC
Confidence 999944444333
No 221
>COG4627 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=96.83 E-value=0.00054 Score=69.79 Aligned_cols=103 Identities=15% Similarity=0.037 Sum_probs=72.4
Q ss_pred EEEEEcCccccCCCCCCccEEEEccccccCChhHHHHHHHHHHHccCCC-EEEEEecCCchhHHHHhhccCccCCCCcch
Q 002218 778 AVLFDGSITVFDSRLHGFDIGTCLEVIEHMEEDEASQFGNIVLSSFRPR-ILIVSTPNYEYNAILQKSSSTIQEDDPDEK 856 (952)
Q Consensus 778 Vtf~qGDa~dLpf~d~sFDVVVcieVIEHL~dD~l~~L~eeI~RvLKPG-~LIISTPN~efN~lf~~L~~~ta~eYPde~ 856 (952)
+++.+-......|.+++.|+|++-.|+||+..++...+.++++++|||| .+-|++|...|-....... .
T Consensus 31 vdlvc~As~e~~F~dns~d~iyaeHvlEHlt~~Eg~~alkechr~Lrp~G~LriAvPdl~f~~~~Y~~~----------v 100 (185)
T COG4627 31 VDLVCRASNESMFEDNSVDAIYAEHVLEHLTYDEGTSALKECHRFLRPGGKLRIAVPDLKFLDWLYQHD----------V 100 (185)
T ss_pred cchhhhhhhhccCCCcchHHHHHHHHHHHHhHHHHHHHHHHHHHHhCcCcEEEEEcCCcchhHHHHhhh----------h
Confidence 4444433445678899999999999999999888888889999999999 9999999987654322110 0
Q ss_pred hhhccccccCCCCccccCHHHHHHHHHHHHHHcCcEEE
Q 002218 857 TQLQSCKFRNHDHKFEWTRDQFNCWATELAARHNYSVE 894 (952)
Q Consensus 857 ~g~~~~~fRh~DHkFEWTReEFqsWae~La~q~GYsVe 894 (952)
+.-+..+-.|++|++-.|.+.+. +....+|+.+.
T Consensus 101 qvggpgpndhP~~r~v~t~r~m~----n~~m~~~~~~k 134 (185)
T COG4627 101 QVGGPGPNDHPLHRIVKTMRMMF----NGFMDAGFVVK 134 (185)
T ss_pred hccCCCCCCCcHHHHHHHHHHHH----HHHHhhhheeh
Confidence 00012344577888877777776 45556666664
No 222
>COG4076 Predicted RNA methylase [General function prediction only]
Probab=96.80 E-value=0.0024 Score=67.01 Aligned_cols=112 Identities=21% Similarity=0.268 Sum_probs=78.4
Q ss_pred HHHHHHHHhhcCCCCEEEEEcCccchHHHHHhcCCCCCceEEEEeCChHHHHHHHHHHhhhhhcccccCCCCCCCccEEE
Q 002218 701 RVEYALQHIKESCATTLVDFGCGSGSLLDSLLDYPTALEKIVGVDISQKSLSRAAKIIHSKLSKKLDAAVPCTDVKSAVL 780 (952)
Q Consensus 701 R~efVldlL~~~k~krVLDIGCGeG~ll~~LAr~g~~~~qVVGVDISeemLe~ArkrLsa~la~~~~~l~Pr~~~~nVtf 780 (952)
|.....+.+.......+.|+|.|+|.++...+... .+|++|+.++...+.|.++++ -.+..+++.
T Consensus 20 RlavF~~ai~~va~d~~~DLGaGsGiLs~~Aa~~A---~rViAiE~dPk~a~~a~eN~~------------v~g~~n~ev 84 (252)
T COG4076 20 RLAVFTSAIAEVAEDTFADLGAGSGILSVVAAHAA---ERVIAIEKDPKRARLAEENLH------------VPGDVNWEV 84 (252)
T ss_pred HHHHHHHHHHHHhhhceeeccCCcchHHHHHHhhh---ceEEEEecCcHHHHHhhhcCC------------CCCCcceEE
Confidence 44444444444455789999999999998777765 799999999999999988764 235679999
Q ss_pred EEcCccccCCCCCCccEEEEccccccC-ChhHHHHHHHHHHHccCCCEEEE
Q 002218 781 FDGSITVFDSRLHGFDIGTCLEVIEHM-EEDEASQFGNIVLSSFRPRILIV 830 (952)
Q Consensus 781 ~qGDa~dLpf~d~sFDVVVcieVIEHL-~dD~l~~L~eeI~RvLKPG~LII 830 (952)
+.||+.+.+| ...|+|+|-..=.-+ .+++...+. .+..+||-..-||
T Consensus 85 v~gDA~~y~f--e~ADvvicEmlDTaLi~E~qVpV~n-~vleFLr~d~tii 132 (252)
T COG4076 85 VVGDARDYDF--ENADVVICEMLDTALIEEKQVPVIN-AVLEFLRYDPTII 132 (252)
T ss_pred Eecccccccc--cccceeHHHHhhHHhhcccccHHHH-HHHHHhhcCCccc
Confidence 9999999988 578999884321112 223334443 4666777663333
No 223
>TIGR00308 TRM1 tRNA(guanine-26,N2-N2) methyltransferase. This enzyme is responsible for two methylations of a characteristic guanine of most tRNA molecules. The activity has been demonstrated for eukaryotic and archaeal proteins, which are active when expressed in E. coli, a species that lacks this enzyme. At least one Eubacterium, Aquifex aeolicus, has an ortholog, as do all completed archaeal genomes.
Probab=96.78 E-value=0.016 Score=66.31 Aligned_cols=99 Identities=12% Similarity=0.097 Sum_probs=72.0
Q ss_pred CEEEEEcCccchHHHHHhcCCCCCceEEEEeCChHHHHHHHHHHhhhhhcccccCCCCCCCccEEEEEcCccccCCC-CC
Q 002218 715 TTLVDFGCGSGSLLDSLLDYPTALEKIVGVDISQKSLSRAAKIIHSKLSKKLDAAVPCTDVKSAVLFDGSITVFDSR-LH 793 (952)
Q Consensus 715 krVLDIGCGeG~ll~~LAr~g~~~~qVVGVDISeemLe~ArkrLsa~la~~~~~l~Pr~~~~nVtf~qGDa~dLpf~-d~ 793 (952)
.+|||+.||+|..+..++...+...+|+++|+++++++.+++++.. .+..+++++++|+..+... ..
T Consensus 46 ~~vLD~faGsG~rgir~a~e~~ga~~Vv~nD~n~~Av~~i~~N~~~------------N~~~~~~v~~~Da~~~l~~~~~ 113 (374)
T TIGR00308 46 INIADALSASGIRAIRYAHEIEGVREVFANDINPKAVESIKNNVEY------------NSVENIEVPNEDAANVLRYRNR 113 (374)
T ss_pred CEEEECCCchhHHHHHHHhhCCCCCEEEEEeCCHHHHHHHHHHHHH------------hCCCcEEEEchhHHHHHHHhCC
Confidence 4899999999999999988732237899999999999999988742 1233688999998775432 35
Q ss_pred CccEEEEccccccCChhHHHHHHHHHHHccCCC-EEEEE
Q 002218 794 GFDIGTCLEVIEHMEEDEASQFGNIVLSSFRPR-ILIVS 831 (952)
Q Consensus 794 sFDVVVcieVIEHL~dD~l~~L~eeI~RvLKPG-~LIIS 831 (952)
.||+|..- -. ..+ ..|.+.+.+.+++| .+.++
T Consensus 114 ~fDvIdlD-Pf-Gs~----~~fld~al~~~~~~glL~vT 146 (374)
T TIGR00308 114 KFHVIDID-PF-GTP----APFVDSAIQASAERGLLLVT 146 (374)
T ss_pred CCCEEEeC-CC-CCc----HHHHHHHHHhcccCCEEEEE
Confidence 79999763 32 222 23445677788887 66665
No 224
>KOG1663 consensus O-methyltransferase [Secondary metabolites biosynthesis, transport and catabolism]
Probab=96.75 E-value=0.013 Score=63.11 Aligned_cols=117 Identities=12% Similarity=0.146 Sum_probs=85.2
Q ss_pred HHHHHHHHHHhhcCCCCEEEEEcCccchHHHHHhcCCCCCceEEEEeCChHHHHHHHHHHhhhhhcccccCCCCCCCccE
Q 002218 699 KQRVEYALQHIKESCATTLVDFGCGSGSLLDSLLDYPTALEKIVGVDISQKSLSRAAKIIHSKLSKKLDAAVPCTDVKSA 778 (952)
Q Consensus 699 ~QR~efVldlL~~~k~krVLDIGCGeG~ll~~LAr~g~~~~qVVGVDISeemLe~ArkrLsa~la~~~~~l~Pr~~~~nV 778 (952)
+...+|+...++..+++++||||-=+|+-+..+|..-++..+|+++|++++..+.+.+.... .+-...|
T Consensus 59 ~d~g~fl~~li~~~~ak~~lelGvfTGySaL~~Alalp~dGrv~a~eid~~~~~~~~~~~k~-----------agv~~KI 127 (237)
T KOG1663|consen 59 PDKGQFLQMLIRLLNAKRTLELGVFTGYSALAVALALPEDGRVVAIEIDADAYEIGLELVKL-----------AGVDHKI 127 (237)
T ss_pred hHHHHHHHHHHHHhCCceEEEEecccCHHHHHHHHhcCCCceEEEEecChHHHHHhHHHHHh-----------cccccee
Confidence 45566777777888999999999878877776666555568999999999999999654432 1234589
Q ss_pred EEEEcCcccc-C-----CCCCCccEEEEccccccCChhHHHHHHHHHHHccCCCEEEEE
Q 002218 779 VLFDGSITVF-D-----SRLHGFDIGTCLEVIEHMEEDEASQFGNIVLSSFRPRILIVS 831 (952)
Q Consensus 779 tf~qGDa~dL-p-----f~d~sFDVVVcieVIEHL~dD~l~~L~eeI~RvLKPG~LIIS 831 (952)
++++|.+.+. + .+.++||.++ +.|-.+.-. .+.+.+.+++|+|.+|+.
T Consensus 128 ~~i~g~a~esLd~l~~~~~~~tfDfaF----vDadK~nY~-~y~e~~l~Llr~GGvi~~ 181 (237)
T KOG1663|consen 128 TFIEGPALESLDELLADGESGTFDFAF----VDADKDNYS-NYYERLLRLLRVGGVIVV 181 (237)
T ss_pred eeeecchhhhHHHHHhcCCCCceeEEE----EccchHHHH-HHHHHHHhhcccccEEEE
Confidence 9999988652 1 2357899994 566664444 455679999999955443
No 225
>PRK11760 putative 23S rRNA C2498 ribose 2'-O-ribose methyltransferase; Provisional
Probab=96.69 E-value=0.018 Score=65.29 Aligned_cols=87 Identities=17% Similarity=0.168 Sum_probs=62.5
Q ss_pred CCCCEEEEEcCccchHHHHHhcCCCCCceEEEEeCChHHHHHHHHHHhhhhhcccccCCCCCCCccEEEEEcCccccCCC
Q 002218 712 SCATTLVDFGCGSGSLLDSLLDYPTALEKIVGVDISQKSLSRAAKIIHSKLSKKLDAAVPCTDVKSAVLFDGSITVFDSR 791 (952)
Q Consensus 712 ~k~krVLDIGCGeG~ll~~LAr~g~~~~qVVGVDISeemLe~ArkrLsa~la~~~~~l~Pr~~~~nVtf~qGDa~dLpf~ 791 (952)
.++.++|||||++|.++..|.+.| .+|+|||..+ + + ..+. ..++|+.+.+|.......
T Consensus 210 ~~g~~vlDLGAsPGGWT~~L~~rG---~~V~AVD~g~--l--~-~~L~--------------~~~~V~h~~~d~fr~~p~ 267 (357)
T PRK11760 210 APGMRAVDLGAAPGGWTYQLVRRG---MFVTAVDNGP--M--A-QSLM--------------DTGQVEHLRADGFKFRPP 267 (357)
T ss_pred CCCCEEEEeCCCCcHHHHHHHHcC---CEEEEEechh--c--C-Hhhh--------------CCCCEEEEeccCcccCCC
Confidence 467899999999999999999998 7999999543 1 1 1111 235799999888766544
Q ss_pred CCCccEEEEccccccCChhHHHHHHHHHHHccCCC
Q 002218 792 LHGFDIGTCLEVIEHMEEDEASQFGNIVLSSFRPR 826 (952)
Q Consensus 792 d~sFDVVVcieVIEHL~dD~l~~L~eeI~RvLKPG 826 (952)
.+.+|.++|-.+ + .+. ...+-|..+|..|
T Consensus 268 ~~~vDwvVcDmv-e----~P~-rva~lm~~Wl~~g 296 (357)
T PRK11760 268 RKNVDWLVCDMV-E----KPA-RVAELMAQWLVNG 296 (357)
T ss_pred CCCCCEEEEecc-c----CHH-HHHHHHHHHHhcC
Confidence 678999998544 2 222 2234577788777
No 226
>KOG0820 consensus Ribosomal RNA adenine dimethylase [RNA processing and modification]
Probab=96.67 E-value=0.0076 Score=66.32 Aligned_cols=79 Identities=20% Similarity=0.330 Sum_probs=62.5
Q ss_pred HHHhhcCCCCEEEEEcCccchHHHHHhcCCCCCceEEEEeCChHHHHHHHHHHhhhhhcccccCCCCCCCccEEEEEcCc
Q 002218 706 LQHIKESCATTLVDFGCGSGSLLDSLLDYPTALEKIVGVDISQKSLSRAAKIIHSKLSKKLDAAVPCTDVKSAVLFDGSI 785 (952)
Q Consensus 706 ldlL~~~k~krVLDIGCGeG~ll~~LAr~g~~~~qVVGVDISeemLe~ArkrLsa~la~~~~~l~Pr~~~~nVtf~qGDa 785 (952)
++.....+...|||+|-|+|.++..|.+.+ .+|+++++++.|+..-.++... .| .....++++||.
T Consensus 51 ~~ka~~k~tD~VLEvGPGTGnLT~~lLe~~---kkVvA~E~Dprmvael~krv~g---------tp--~~~kLqV~~gD~ 116 (315)
T KOG0820|consen 51 VEKADLKPTDVVLEVGPGTGNLTVKLLEAG---KKVVAVEIDPRMVAELEKRVQG---------TP--KSGKLQVLHGDF 116 (315)
T ss_pred HhccCCCCCCEEEEeCCCCCHHHHHHHHhc---CeEEEEecCcHHHHHHHHHhcC---------CC--ccceeeEEeccc
Confidence 333344577899999999999999999998 8999999999999998887641 11 124689999999
Q ss_pred cccCCCCCCccEEEE
Q 002218 786 TVFDSRLHGFDIGTC 800 (952)
Q Consensus 786 ~dLpf~d~sFDVVVc 800 (952)
...+. -.||.+|+
T Consensus 117 lK~d~--P~fd~cVs 129 (315)
T KOG0820|consen 117 LKTDL--PRFDGCVS 129 (315)
T ss_pred ccCCC--cccceeec
Confidence 77653 46898887
No 227
>PF03059 NAS: Nicotianamine synthase protein; InterPro: IPR004298 Nicotianamine synthase 2.5.1.43 from EC catalyzes the trimerization of S-adenosylmethionine to yield one molecule of nicotianamine. Nicotianamine has an important role in plant iron uptake mechanisms. Plants adopt two strategies (termed I and II) of iron acquisition. Strategy I is adopted by all higher plants except graminaceous plants, which adopt strategy II [, ]. In strategy I plants, the role of nicotianamine is not fully determined: possible roles include the formation of more stable complexes with ferrous than with ferric ion, which might serve as a sensor of the physiological status of iron within a plant, or which might be involved in the transport of iron []. In strategy II (graminaceous) plants, nicotianamine is the key intermediate (and nicotianamine synthase the key enzyme) in the synthesis of the mugineic family (the only known family in plants) of phytosiderophores. Phytosiderophores are iron chelators whose secretion by the roots is greatly increased in instances of iron deficiency []. The 3D structures of five example NAS from Methanothermobacter thermautotrophicus reveal the monomer to consist of a five-helical bundle N-terminal domain on top of a classic Rossmann fold C-terminal domain. The N-terminal domain is unique to the NAS family, whereas the C-terminal domain is homologous to the class I family of SAM-dependent methyltransferases. An active site is created at the interface of the two domains, at the rim of a large cavity that corresponds to the nucleotide binding site such as is found in other proteins adopting a Rossmann fold [].; GO: 0030410 nicotianamine synthase activity, 0030418 nicotianamine biosynthetic process; PDB: 3O31_B 3FPH_A 3FPJ_A 3FPE_B 3FPF_B 3FPG_B.
Probab=96.61 E-value=0.017 Score=63.77 Aligned_cols=108 Identities=14% Similarity=0.153 Sum_probs=60.6
Q ss_pred CCCEEEEEcCccchHH-HHHhcCCCCCceEEEEeCChHHHHHHHHHHhhhhhcccccCCCCCCCccEEEEEcCccccCCC
Q 002218 713 CATTLVDFGCGSGSLL-DSLLDYPTALEKIVGVDISQKSLSRAAKIIHSKLSKKLDAAVPCTDVKSAVLFDGSITVFDSR 791 (952)
Q Consensus 713 k~krVLDIGCGeG~ll-~~LAr~g~~~~qVVGVDISeemLe~ArkrLsa~la~~~~~l~Pr~~~~nVtf~qGDa~dLpf~ 791 (952)
.+++|+=||||.=-++ ..|++.......|+++|+++++++.+++...... +...+++|..+|+.+.+..
T Consensus 120 ~p~rVaFIGSGPLPlT~i~la~~~~~~~~v~~iD~d~~A~~~a~~lv~~~~----------~L~~~m~f~~~d~~~~~~d 189 (276)
T PF03059_consen 120 PPSRVAFIGSGPLPLTSIVLAKQHGPGARVHNIDIDPEANELARRLVASDL----------GLSKRMSFITADVLDVTYD 189 (276)
T ss_dssp ---EEEEE---SS-HHHHHHH--HTT--EEEEEESSHHHHHHHHHHHH-------------HH-SSEEEEES-GGGG-GG
T ss_pred ccceEEEEcCCCcchHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHhhcc----------cccCCeEEEecchhccccc
Confidence 3469999999976666 4445442233689999999999999987665211 1124799999999888766
Q ss_pred CCCccEEEEccccccCChhHHHHHHHHHHHccCCC-EEEEE
Q 002218 792 LHGFDIGTCLEVIEHMEEDEASQFGNIVLSSFRPR-ILIVS 831 (952)
Q Consensus 792 d~sFDVVVcieVIEHL~dD~l~~L~eeI~RvLKPG-~LIIS 831 (952)
...||+|+......--. ++...+.+.+.+.++|| .+++=
T Consensus 190 l~~~DvV~lAalVg~~~-e~K~~Il~~l~~~m~~ga~l~~R 229 (276)
T PF03059_consen 190 LKEYDVVFLAALVGMDA-EPKEEILEHLAKHMAPGARLVVR 229 (276)
T ss_dssp ----SEEEE-TT-S-----SHHHHHHHHHHHS-TTSEEEEE
T ss_pred cccCCEEEEhhhccccc-chHHHHHHHHHhhCCCCcEEEEe
Confidence 78999998876655333 34455556899999999 55543
No 228
>COG2521 Predicted archaeal methyltransferase [General function prediction only]
Probab=96.58 E-value=0.0056 Score=66.19 Aligned_cols=145 Identities=14% Similarity=0.088 Sum_probs=98.4
Q ss_pred cceeeeecccCC--Ch----hhhhhhhcCCchhHHHHHHHHHHHhhcCCCCEEEEEcCccchHHHHHhcCCCCCceEEEE
Q 002218 671 LEYHITLLRVTE--PP----EDRMEQALFSPPLSKQRVEYALQHIKESCATTLVDFGCGSGSLLDSLLDYPTALEKIVGV 744 (952)
Q Consensus 671 LEyyI~LL~v~e--p~----EeRye~~~F~PPL~~QR~efVldlL~~~k~krVLDIGCGeG~ll~~LAr~g~~~~qVVGV 744 (952)
-+.|.+|++..- |- .-+|....-..|+...+.. ++.++...+.+|||-.-|-|+.+...+++|. ..|+-|
T Consensus 88 ~~~~yKLvPt~~G~PTiEIdGIrMhrt~~tdP~~Dt~~K--v~~V~~~~G~rVLDtC~GLGYtAi~a~~rGA--~~Vitv 163 (287)
T COG2521 88 AEHYYKLVPTPPGAPTIEIDGIRMHRTKGTDPLEDTLAK--VELVKVKRGERVLDTCTGLGYTAIEALERGA--IHVITV 163 (287)
T ss_pred cCccEEEecCCCCCCeEEEccEEEecccCcCcHHHHHhh--hheeccccCCEeeeeccCccHHHHHHHHcCC--cEEEEE
Confidence 566677776443 22 2446655556677775544 2344556789999999999999999999983 499999
Q ss_pred eCChHHHHHHHHHHhhhhhcccccCCCCCCCccEEEEEcCcccc--CCCCCCccEEEEc----cccccCChhHHHHHHHH
Q 002218 745 DISQKSLSRAAKIIHSKLSKKLDAAVPCTDVKSAVLFDGSITVF--DSRLHGFDIGTCL----EVIEHMEEDEASQFGNI 818 (952)
Q Consensus 745 DISeemLe~ArkrLsa~la~~~~~l~Pr~~~~nVtf~qGDa~dL--pf~d~sFDVVVci----eVIEHL~dD~l~~L~ee 818 (952)
+.++..|+.|+ +++... .-....|+++.||+.+. ++.+.+||+|+-- ..--++. -..|.++
T Consensus 164 Ekdp~VLeLa~--lNPwSr--------~l~~~~i~iilGD~~e~V~~~~D~sfDaIiHDPPRfS~AgeLY---seefY~E 230 (287)
T COG2521 164 EKDPNVLELAK--LNPWSR--------ELFEIAIKIILGDAYEVVKDFDDESFDAIIHDPPRFSLAGELY---SEEFYRE 230 (287)
T ss_pred eeCCCeEEeec--cCCCCc--------cccccccEEecccHHHHHhcCCccccceEeeCCCccchhhhHh---HHHHHHH
Confidence 99999999984 332211 11223689999999874 5678999999741 0011232 2356678
Q ss_pred HHHccCCC-EEEEEe
Q 002218 819 VLSSFRPR-ILIVST 832 (952)
Q Consensus 819 I~RvLKPG-~LIIST 832 (952)
++|+|||| .++=-+
T Consensus 231 l~RiLkrgGrlFHYv 245 (287)
T COG2521 231 LYRILKRGGRLFHYV 245 (287)
T ss_pred HHHHcCcCCcEEEEe
Confidence 99999998 554333
No 229
>TIGR01444 fkbM_fam methyltransferase, FkbM family. Members of this family are characterized by two well-conserved short regions separated by a variable in both sequence and length. The first of the two regions is found in a large number of proteins outside this subfamily, a number of which have been characterized as methyltransferases. One member of the present family, FkbM, was shown to be required for a specific methylation in the biosynthesis of the immunosuppressant FK506 in Streptomyces strain MA6548.
Probab=96.56 E-value=0.0054 Score=58.99 Aligned_cols=43 Identities=9% Similarity=0.129 Sum_probs=37.6
Q ss_pred EEEEEcCccchHHHHHhcCCCCCceEEEEeCChHHHHHHHHHHh
Q 002218 716 TLVDFGCGSGSLLDSLLDYPTALEKIVGVDISQKSLSRAAKIIH 759 (952)
Q Consensus 716 rVLDIGCGeG~ll~~LAr~g~~~~qVVGVDISeemLe~ArkrLs 759 (952)
++||+|||.|.++..+++.+ +..+|+++|+++.+.+.+++++.
T Consensus 1 ~vlDiGa~~G~~~~~~~~~~-~~~~v~~~E~~~~~~~~l~~~~~ 43 (143)
T TIGR01444 1 VVIDVGANIGDTSLYFARKG-AEGRVIAFEPLPDAYEILEENVK 43 (143)
T ss_pred CEEEccCCccHHHHHHHHhC-CCCEEEEEecCHHHHHHHHHHHH
Confidence 48999999999999998877 34589999999999999988764
No 230
>cd00048 DSRM Double-stranded RNA binding motif. Binding is not sequence specific but is highly specific for double stranded RNA. Found in a variety of proteins including dsRNA dependent protein kinase PKR, RNA helicases, Drosophila staufen protein, E. coli RNase III, RNases H1, and dsRNA dependent adenosine deaminases.
Probab=96.54 E-value=0.0072 Score=50.61 Aligned_cols=37 Identities=30% Similarity=0.229 Sum_probs=33.3
Q ss_pred ceEEEeeecCCceeeeccccccchHHHHHHHHHHHHc
Q 002218 56 CLYRCSLQLPEFSVVSETFKKKKDAEQSAAEKALEKL 92 (952)
Q Consensus 56 ~~~~c~l~lp~~~v~~~~~~~kkdaeq~aa~~al~kl 92 (952)
..|+|.+.+.+..+.+|.-+.||+|||.||+.||++|
T Consensus 32 ~~f~~~v~i~~~~~~~g~g~sKk~Ak~~AA~~al~~L 68 (68)
T cd00048 32 PRFTVEVTVGGKITGEGEGSSKKEAKQNAAEAALRKL 68 (68)
T ss_pred CeEEEEEEECCEEEEEeecCCHHHHHHHHHHHHHHhC
Confidence 4899999999867777888899999999999999986
No 231
>PF11968 DUF3321: Putative methyltransferase (DUF3321); InterPro: IPR021867 This family is conserved in fungi and is annotated as being a nucleolar protein.
Probab=96.53 E-value=0.019 Score=61.50 Aligned_cols=90 Identities=12% Similarity=0.138 Sum_probs=63.1
Q ss_pred CEEEEEcCccchHHHHHhcCCCCCceEEEEeCChHHHHHHHHHHhhhhhcccccCCCCCCCccEEEEEcCccccCC---C
Q 002218 715 TTLVDFGCGSGSLLDSLLDYPTALEKIVGVDISQKSLSRAAKIIHSKLSKKLDAAVPCTDVKSAVLFDGSITVFDS---R 791 (952)
Q Consensus 715 krVLDIGCGeG~ll~~LAr~g~~~~qVVGVDISeemLe~ArkrLsa~la~~~~~l~Pr~~~~nVtf~qGDa~dLpf---~ 791 (952)
.++|||||=+...... ..+ ...|+.||+.+. .-.+.+.|..+.|. +
T Consensus 53 lrlLEVGals~~N~~s--~~~--~fdvt~IDLns~---------------------------~~~I~qqDFm~rplp~~~ 101 (219)
T PF11968_consen 53 LRLLEVGALSTDNACS--TSG--WFDVTRIDLNSQ---------------------------HPGILQQDFMERPLPKNE 101 (219)
T ss_pred ceEEeecccCCCCccc--ccC--ceeeEEeecCCC---------------------------CCCceeeccccCCCCCCc
Confidence 5999999876665432 222 256999998651 11233455555544 3
Q ss_pred CCCccEEEEccccccCCh-hHHHHHHHHHHHccCCC-E-----EEEEecCC
Q 002218 792 LHGFDIGTCLEVIEHMEE-DEASQFGNIVLSSFRPR-I-----LIVSTPNY 835 (952)
Q Consensus 792 d~sFDVVVcieVIEHL~d-D~l~~L~eeI~RvLKPG-~-----LIISTPN~ 835 (952)
.+.||+|+|+-||+++|. .++-.+...+.++|+|+ . +++.+|..
T Consensus 102 ~e~FdvIs~SLVLNfVP~p~~RG~Ml~r~~~fL~~~g~~~~~~LFlVlP~~ 152 (219)
T PF11968_consen 102 SEKFDVISLSLVLNFVPDPKQRGEMLRRAHKFLKPPGLSLFPSLFLVLPLP 152 (219)
T ss_pred ccceeEEEEEEEEeeCCCHHHHHHHHHHHHHHhCCCCccCcceEEEEeCch
Confidence 568999999999999994 44456666799999998 7 78888753
No 232
>PF04816 DUF633: Family of unknown function (DUF633) ; InterPro: IPR006901 This is a family of uncharacterised bacterial proteins.; GO: 0016429 tRNA (adenine-N1-)-methyltransferase activity; PDB: 3LEC_A 3KU1_G 3KR9_A 3GNL_B.
Probab=96.52 E-value=0.028 Score=59.47 Aligned_cols=104 Identities=16% Similarity=0.061 Sum_probs=65.7
Q ss_pred EEEEcCccchHHHHHhcCCCCCceEEEEeCChHHHHHHHHHHhhhhhcccccCCCCCCCccEEEEEcCccccCCCCCCcc
Q 002218 717 LVDFGCGSGSLLDSLLDYPTALEKIVGVDISQKSLSRAAKIIHSKLSKKLDAAVPCTDVKSAVLFDGSITVFDSRLHGFD 796 (952)
Q Consensus 717 VLDIGCGeG~ll~~LAr~g~~~~qVVGVDISeemLe~ArkrLsa~la~~~~~l~Pr~~~~nVtf~qGDa~dLpf~d~sFD 796 (952)
|.||||--|++..+|.+.+ ...+++++|+++..++.|++.+... +...+|++..||..+.-.+....|
T Consensus 1 vaDIGtDHgyLpi~L~~~~-~~~~~ia~DI~~gpL~~A~~~i~~~-----------~l~~~i~~rlgdGL~~l~~~e~~d 68 (205)
T PF04816_consen 1 VADIGTDHGYLPIYLLKNG-KAPKAIAVDINPGPLEKAKENIAKY-----------GLEDRIEVRLGDGLEVLKPGEDVD 68 (205)
T ss_dssp EEEET-STTHHHHHHHHTT-SEEEEEEEESSHHHHHHHHHHHHHT-----------T-TTTEEEEE-SGGGG--GGG---
T ss_pred CceeccchhHHHHHHHhcC-CCCEEEEEeCCHHHHHHHHHHHHHc-----------CCcccEEEEECCcccccCCCCCCC
Confidence 6899999999999999998 4568999999999999999987642 234579999999755322333478
Q ss_pred EEEEccccccCChhHHHHHHHHHHHccCCCEEEEEecCCc
Q 002218 797 IGTCLEVIEHMEEDEASQFGNIVLSSFRPRILIVSTPNYE 836 (952)
Q Consensus 797 VVVcieVIEHL~dD~l~~L~eeI~RvLKPG~LIISTPN~e 836 (952)
.|+..++ .-.....+.+.....++...-+|--||..
T Consensus 69 ~ivIAGM----GG~lI~~ILe~~~~~~~~~~~lILqP~~~ 104 (205)
T PF04816_consen 69 TIVIAGM----GGELIIEILEAGPEKLSSAKRLILQPNTH 104 (205)
T ss_dssp EEEEEEE-----HHHHHHHHHHTGGGGTT--EEEEEESS-
T ss_pred EEEEecC----CHHHHHHHHHhhHHHhccCCeEEEeCCCC
Confidence 8877665 22333344444445554443344456643
No 233
>KOG3191 consensus Predicted N6-DNA-methyltransferase [Translation, ribosomal structure and biogenesis]
Probab=96.40 E-value=0.012 Score=61.58 Aligned_cols=79 Identities=15% Similarity=0.159 Sum_probs=58.7
Q ss_pred hhcCCCCEEEEEcCccchHHHHHhcCCCCCceEEEEeCChHHHHHHHHHHhhhhhcccccCCCCCCCccEEEEEcCcccc
Q 002218 709 IKESCATTLVDFGCGSGSLLDSLLDYPTALEKIVGVDISQKSLSRAAKIIHSKLSKKLDAAVPCTDVKSAVLFDGSITVF 788 (952)
Q Consensus 709 L~~~k~krVLDIGCGeG~ll~~LAr~g~~~~qVVGVDISeemLe~ArkrLsa~la~~~~~l~Pr~~~~nVtf~qGDa~dL 788 (952)
++...+.-++|||||+|..+..|++.-.+....++.||++.+++...+.+.. +..+++.++.|+..-
T Consensus 39 L~~~~~~i~lEIG~GSGvvstfL~~~i~~~~~~latDiNp~A~~~Tl~TA~~-------------n~~~~~~V~tdl~~~ 105 (209)
T KOG3191|consen 39 LKGHNPEICLEIGCGSGVVSTFLASVIGPQALYLATDINPEALEATLETARC-------------NRVHIDVVRTDLLSG 105 (209)
T ss_pred HhhcCceeEEEecCCcchHHHHHHHhcCCCceEEEecCCHHHHHHHHHHHHh-------------cCCccceeehhHHhh
Confidence 3444578899999999999999988765678899999999999988765431 222567777777553
Q ss_pred CCCCCCccEEEEc
Q 002218 789 DSRLHGFDIGTCL 801 (952)
Q Consensus 789 pf~d~sFDVVVci 801 (952)
- +.++.|+++..
T Consensus 106 l-~~~~VDvLvfN 117 (209)
T KOG3191|consen 106 L-RNESVDVLVFN 117 (209)
T ss_pred h-ccCCccEEEEC
Confidence 2 23788888764
No 234
>KOG3987 consensus Uncharacterized conserved protein DREV/CGI-81 [Function unknown]
Probab=96.38 E-value=0.00098 Score=70.65 Aligned_cols=87 Identities=17% Similarity=0.189 Sum_probs=64.5
Q ss_pred CCCEEEEEcCccchHHHHHhcCCCCCceEEEEeCChHHHHHHHHHHhhhhhcccccCCCCCCCccEEEEEcCccccCCCC
Q 002218 713 CATTLVDFGCGSGSLLDSLLDYPTALEKIVGVDISQKSLSRAAKIIHSKLSKKLDAAVPCTDVKSAVLFDGSITVFDSRL 792 (952)
Q Consensus 713 k~krVLDIGCGeG~ll~~LAr~g~~~~qVVGVDISeemLe~ArkrLsa~la~~~~~l~Pr~~~~nVtf~qGDa~dLpf~d 792 (952)
.+.++||+|.|.|..+..++... .+|++.+.|..|..+-+++- . +| -.+.+....+
T Consensus 112 ~~~~lLDlGAGdGeit~~m~p~f---eevyATElS~tMr~rL~kk~----------------y-nV----l~~~ew~~t~ 167 (288)
T KOG3987|consen 112 EPVTLLDLGAGDGEITLRMAPTF---EEVYATELSWTMRDRLKKKN----------------Y-NV----LTEIEWLQTD 167 (288)
T ss_pred CCeeEEeccCCCcchhhhhcchH---HHHHHHHhhHHHHHHHhhcC----------------C-ce----eeehhhhhcC
Confidence 45799999999999999998876 78999999999998876531 1 11 1112222234
Q ss_pred CCccEEEEccccccCChhHHHHHHHHHHHccCC
Q 002218 793 HGFDIGTCLEVIEHMEEDEASQFGNIVLSSFRP 825 (952)
Q Consensus 793 ~sFDVVVcieVIEHL~dD~l~~L~eeI~RvLKP 825 (952)
-+||+|.|..++..-. ++.+.+. -+..+|+|
T Consensus 168 ~k~dli~clNlLDRc~-~p~kLL~-Di~~vl~p 198 (288)
T KOG3987|consen 168 VKLDLILCLNLLDRCF-DPFKLLE-DIHLVLAP 198 (288)
T ss_pred ceeehHHHHHHHHhhc-ChHHHHH-HHHHHhcc
Confidence 5799999999998666 5555554 59999999
No 235
>PF01728 FtsJ: FtsJ-like methyltransferase; InterPro: IPR002877 RrmJ (FtsJ) is a well conserved heat shock protein present in prokaryotes, archaea, and eukaryotes. RrmJ is responsible for methylating 23 S rRNA at position U2552 in the aminoacyl (A)1-site of the ribosome []. U2552 is one of the five universally conserved A-loop residues and has been shown to be methylated at the ribose 2'-OH group in the majority of organisms investigated so far. This suggests that this modification plays an important role in the A-loop function. RrmJ recognises its methylation target only when the 23 S rRNA is present in 50 S ribosomal subunits. This suggests that the RrmJ-mediated methylation must occur late in the maturation process of the ribosome. This is in contrast to other known 23 S rRNA modifications that occur in earlier maturation steps. The 1.5 A crystal structure of RrmJ in complex with its cofactor S-adenosylmethionine revealed that RrmJ has a methyltransferase fold. The active site of RrmJ appears to be formed by a catalytic triad consisting of two lysine residues and the negatively charged aspartate residue. Another highly conserved glutamate residue that is present in the active site of RrmJ appears to play only a minor role in the methyltransfer reaction in vivo []. ; GO: 0003676 nucleic acid binding, 0008168 methyltransferase activity, 0032259 methylation; PDB: 3GCZ_A 2PLW_A 2NYU_A 2OXT_C 3EMD_A 3ELY_A 3ELW_A 3ELU_A 3ELD_A 3EMB_A ....
Probab=96.26 E-value=0.0056 Score=61.83 Aligned_cols=37 Identities=24% Similarity=0.384 Sum_probs=31.4
Q ss_pred CCCEEEEEcCccchHHHHHhcCCCCCceEEEEeCChH
Q 002218 713 CATTLVDFGCGSGSLLDSLLDYPTALEKIVGVDISQK 749 (952)
Q Consensus 713 k~krVLDIGCGeG~ll~~LAr~g~~~~qVVGVDISee 749 (952)
++.+|||+||++|.++..+.+++....+|+|||+.+.
T Consensus 23 ~~~~vlDlG~aPGGws~~~~~~~~~~~~v~avDl~~~ 59 (181)
T PF01728_consen 23 KGFTVLDLGAAPGGWSQVLLQRGGPAGRVVAVDLGPM 59 (181)
T ss_dssp TTEEEEEET-TTSHHHHHHHTSTTTEEEEEEEESSST
T ss_pred cccEEEEcCCcccceeeeeeecccccceEEEEecccc
Confidence 4589999999999999999988744589999999776
No 236
>KOG2352 consensus Predicted spermine/spermidine synthase [Amino acid transport and metabolism]
Probab=96.17 E-value=0.019 Score=67.38 Aligned_cols=103 Identities=17% Similarity=0.234 Sum_probs=83.5
Q ss_pred CEEEEEcCccchHHHHHhcCCCCCceEEEEeCChHHHHHHHHHHhhhhhcccccCCCCCCCccEEEEEcCccccCCCCCC
Q 002218 715 TTLVDFGCGSGSLLDSLLDYPTALEKIVGVDISQKSLSRAAKIIHSKLSKKLDAAVPCTDVKSAVLFDGSITVFDSRLHG 794 (952)
Q Consensus 715 krVLDIGCGeG~ll~~LAr~g~~~~qVVGVDISeemLe~ArkrLsa~la~~~~~l~Pr~~~~nVtf~qGDa~dLpf~d~s 794 (952)
-++|-+|||.=.+...+.+.| ...|+-+|+|+-.++....+.. ...+.+.+...|+..+.+++.+
T Consensus 50 ~~~l~lGCGNS~l~e~ly~~G--~~dI~~iD~S~V~V~~m~~~~~-------------~~~~~~~~~~~d~~~l~fedES 114 (482)
T KOG2352|consen 50 FKILQLGCGNSELSEHLYKNG--FEDITNIDSSSVVVAAMQVRNA-------------KERPEMQMVEMDMDQLVFEDES 114 (482)
T ss_pred ceeEeecCCCCHHHHHHHhcC--CCCceeccccHHHHHHHHhccc-------------cCCcceEEEEecchhccCCCcc
Confidence 389999999999999998877 4789999999999988865432 1345789999999999999999
Q ss_pred ccEEEEccccccCChhHHHH--------HHHHHHHccCCC--EEEEEe
Q 002218 795 FDIGTCLEVIEHMEEDEASQ--------FGNIVLSSFRPR--ILIVST 832 (952)
Q Consensus 795 FDVVVcieVIEHL~dD~l~~--------L~eeI~RvLKPG--~LIIST 832 (952)
||+|+-.+.++++..+.... ...++.|+|+|| .+.++.
T Consensus 115 FdiVIdkGtlDal~~de~a~~~~~~v~~~~~eVsrvl~~~gk~~svtl 162 (482)
T KOG2352|consen 115 FDIVIDKGTLDALFEDEDALLNTAHVSNMLDEVSRVLAPGGKYISVTL 162 (482)
T ss_pred eeEEEecCccccccCCchhhhhhHHhhHHHhhHHHHhccCCEEEEEEe
Confidence 99999999999997544333 256799999998 444444
No 237
>COG0144 Sun tRNA and rRNA cytosine-C5-methylases [Translation, ribosomal structure and biogenesis]
Probab=96.12 E-value=0.074 Score=60.50 Aligned_cols=119 Identities=17% Similarity=0.178 Sum_probs=85.3
Q ss_pred HHHHHhhcCCCCEEEEEcCccchHHHHHhcCCCC-CceEEEEeCChHHHHHHHHHHhhhhhcccccCCCCCCCccEEEEE
Q 002218 704 YALQHIKESCATTLVDFGCGSGSLLDSLLDYPTA-LEKIVGVDISQKSLSRAAKIIHSKLSKKLDAAVPCTDVKSAVLFD 782 (952)
Q Consensus 704 fVldlL~~~k~krVLDIGCGeG~ll~~LAr~g~~-~~qVVGVDISeemLe~ArkrLsa~la~~~~~l~Pr~~~~nVtf~q 782 (952)
++...+...++.+|||+..+.|.=+..+++.... ...|+++|+++.-++..++++. |-+..++...+
T Consensus 147 l~a~~L~p~pge~VlD~cAAPGGKTthla~~~~~~~~iV~A~D~~~~Rl~~l~~nl~------------RlG~~nv~~~~ 214 (355)
T COG0144 147 LPALVLDPKPGERVLDLCAAPGGKTTHLAELMENEGAIVVAVDVSPKRLKRLRENLK------------RLGVRNVIVVN 214 (355)
T ss_pred HHHHHcCCCCcCEEEEECCCCCCHHHHHHHhcCCCCceEEEEcCCHHHHHHHHHHHH------------HcCCCceEEEe
Confidence 4556677888899999999999999888876521 1457999999999999888875 34566788888
Q ss_pred cCccccCCC---CCCccEEEE------ccccccCC-------h-------hHHHHHHHHHHHccCCC-EEEEEecC
Q 002218 783 GSITVFDSR---LHGFDIGTC------LEVIEHME-------E-------DEASQFGNIVLSSFRPR-ILIVSTPN 834 (952)
Q Consensus 783 GDa~dLpf~---d~sFDVVVc------ieVIEHL~-------d-------D~l~~L~eeI~RvLKPG-~LIISTPN 834 (952)
.|...++.. ...||.|+. .++|.-=+ . ..+..+.+...++|||| .++.+|-.
T Consensus 215 ~d~~~~~~~~~~~~~fD~iLlDaPCSg~G~irr~Pd~~~~~~~~~i~~l~~lQ~~iL~~a~~~lk~GG~LVYSTCS 290 (355)
T COG0144 215 KDARRLAELLPGGEKFDRILLDAPCSGTGVIRRDPDVKWRRTPEDIAELAKLQKEILAAALKLLKPGGVLVYSTCS 290 (355)
T ss_pred cccccccccccccCcCcEEEECCCCCCCcccccCccccccCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEccC
Confidence 887655422 225999996 44552222 1 11234556789999999 88888764
No 238
>PF03602 Cons_hypoth95: Conserved hypothetical protein 95; InterPro: IPR004398 This entry contains Ribosomal RNA small subunit methyltransferase D as well as the putative rRNA methyltransferase YlbH. They methylate the guanosine in position 966 of 16S rRNA in the assembled 30S particle [].; GO: 0008168 methyltransferase activity, 0031167 rRNA methylation; PDB: 3P9N_A 2ESR_B 2IFT_A 1WS6_A 2FPO_B 2FHP_A.
Probab=96.09 E-value=0.015 Score=60.19 Aligned_cols=123 Identities=14% Similarity=0.090 Sum_probs=77.6
Q ss_pred hHHHHHHHHHHHhhc--CCCCEEEEEcCccchHHHHHhcCCCCCceEEEEeCChHHHHHHHHHHhhhhhcccccCCCCCC
Q 002218 697 LSKQRVEYALQHIKE--SCATTLVDFGCGSGSLLDSLLDYPTALEKIVGVDISQKSLSRAAKIIHSKLSKKLDAAVPCTD 774 (952)
Q Consensus 697 L~~QR~efVldlL~~--~k~krVLDIGCGeG~ll~~LAr~g~~~~qVVGVDISeemLe~ArkrLsa~la~~~~~l~Pr~~ 774 (952)
....-.+.+.+++.. ..+.++||+=||+|.++...+.+|. .+|+.||.+...+...++++...- .
T Consensus 24 T~drvrealFniL~~~~~~g~~vLDLFaGSGalGlEALSRGA--~~v~fVE~~~~a~~~i~~N~~~l~-----------~ 90 (183)
T PF03602_consen 24 TTDRVREALFNILQPRNLEGARVLDLFAGSGALGLEALSRGA--KSVVFVEKNRKAIKIIKKNLEKLG-----------L 90 (183)
T ss_dssp SSHHHHHHHHHHHHCH-HTT-EEEETT-TTSHHHHHHHHTT---SEEEEEES-HHHHHHHHHHHHHHT------------
T ss_pred CcHHHHHHHHHHhcccccCCCeEEEcCCccCccHHHHHhcCC--CeEEEEECCHHHHHHHHHHHHHhC-----------C
Confidence 334444556666654 4789999999999999998887774 799999999999999998876421 1
Q ss_pred CccEEEEEcCccccC----CCCCCccEEEEccccccCChhHHHHHHHHHH--HccCCC-EEEEEecC
Q 002218 775 VKSAVLFDGSITVFD----SRLHGFDIGTCLEVIEHMEEDEASQFGNIVL--SSFRPR-ILIVSTPN 834 (952)
Q Consensus 775 ~~nVtf~qGDa~dLp----f~d~sFDVVVcieVIEHL~dD~l~~L~eeI~--RvLKPG-~LIISTPN 834 (952)
..+++.+.+|+...- .....||+|+.-==.. .. .....+.+.+. .+|+++ .+|+....
T Consensus 91 ~~~~~v~~~d~~~~l~~~~~~~~~fDiIflDPPY~-~~-~~~~~~l~~l~~~~~l~~~~~ii~E~~~ 155 (183)
T PF03602_consen 91 EDKIRVIKGDAFKFLLKLAKKGEKFDIIFLDPPYA-KG-LYYEELLELLAENNLLNEDGLIIIEHSK 155 (183)
T ss_dssp GGGEEEEESSHHHHHHHHHHCTS-EEEEEE--STT-SC-HHHHHHHHHHHHTTSEEEEEEEEEEEET
T ss_pred CcceeeeccCHHHHHHhhcccCCCceEEEECCCcc-cc-hHHHHHHHHHHHCCCCCCCEEEEEEecC
Confidence 226888998865422 1357899998731111 11 11122333344 788988 66666654
No 239
>COG3897 Predicted methyltransferase [General function prediction only]
Probab=96.05 E-value=0.02 Score=60.55 Aligned_cols=107 Identities=15% Similarity=0.119 Sum_probs=76.9
Q ss_pred CCCCEEEEEcCccchHHHHHhcCCCCCceEEEEeCChHHHHHHHHHHhhhhhcccccCCCCCCCccEEEEEcCccccCCC
Q 002218 712 SCATTLVDFGCGSGSLLDSLLDYPTALEKIVGVDISQKSLSRAAKIIHSKLSKKLDAAVPCTDVKSAVLFDGSITVFDSR 791 (952)
Q Consensus 712 ~k~krVLDIGCGeG~ll~~LAr~g~~~~qVVGVDISeemLe~ArkrLsa~la~~~~~l~Pr~~~~nVtf~qGDa~dLpf~ 791 (952)
-.+++|||+|.|+|.-+..-++.|. ..|+..|+.+..++..+-+..+ +.-.|.+...|+.. .
T Consensus 78 VrgkrVLd~gagsgLvaIAaa~aGA--~~v~a~d~~P~~~~ai~lNa~a-------------ngv~i~~~~~d~~g---~ 139 (218)
T COG3897 78 VRGKRVLDLGAGSGLVAIAAARAGA--AEVVAADIDPWLEQAIRLNAAA-------------NGVSILFTHADLIG---S 139 (218)
T ss_pred cccceeeecccccChHHHHHHHhhh--HHHHhcCCChHHHHHhhcchhh-------------ccceeEEeeccccC---C
Confidence 3679999999999999998888885 7899999998777766443321 22367888877654 4
Q ss_pred CCCccEEEEccccccCChhHHHHHHHHHHHccCCC-EEEEEecCCchh
Q 002218 792 LHGFDIGTCLEVIEHMEEDEASQFGNIVLSSFRPR-ILIVSTPNYEYN 838 (952)
Q Consensus 792 d~sFDVVVcieVIEHL~dD~l~~L~eeI~RvLKPG-~LIISTPN~efN 838 (952)
+..||+++..+++..= .....++....++...| .++|.+|...+-
T Consensus 140 ~~~~Dl~LagDlfy~~--~~a~~l~~~~~~l~~~g~~vlvgdp~R~~l 185 (218)
T COG3897 140 PPAFDLLLAGDLFYNH--TEADRLIPWKDRLAEAGAAVLVGDPGRAYL 185 (218)
T ss_pred CcceeEEEeeceecCc--hHHHHHHHHHHHHHhCCCEEEEeCCCCCCC
Confidence 5789999999985433 23344555445555557 888889976554
No 240
>COG0357 GidB Predicted S-adenosylmethionine-dependent methyltransferase involved in bacterial cell division [Cell envelope biogenesis, outer membrane]
Probab=96.03 E-value=0.024 Score=60.62 Aligned_cols=94 Identities=15% Similarity=0.154 Sum_probs=69.5
Q ss_pred CCEEEEEcCccchHHHHHhcCCCCCceEEEEeCChHHHHHHHHHHhhhhhcccccCCCCCCCccEEEEEcCccccCCCCC
Q 002218 714 ATTLVDFGCGSGSLLDSLLDYPTALEKIVGVDISQKSLSRAAKIIHSKLSKKLDAAVPCTDVKSAVLFDGSITVFDSRLH 793 (952)
Q Consensus 714 ~krVLDIGCGeG~ll~~LAr~g~~~~qVVGVDISeemLe~ArkrLsa~la~~~~~l~Pr~~~~nVtf~qGDa~dLpf~d~ 793 (952)
+++++|||.|.|.-+..||=.. +..+|+-+|-...-+..-+..... -+..|++++++.++++.....
T Consensus 68 ~~~~~DIGSGaGfPGipLAI~~-p~~~vtLles~~Kk~~FL~~~~~e------------L~L~nv~i~~~RaE~~~~~~~ 134 (215)
T COG0357 68 AKRVLDIGSGAGFPGIPLAIAF-PDLKVTLLESLGKKIAFLREVKKE------------LGLENVEIVHGRAEEFGQEKK 134 (215)
T ss_pred CCEEEEeCCCCCCchhhHHHhc-cCCcEEEEccCchHHHHHHHHHHH------------hCCCCeEEehhhHhhcccccc
Confidence 6899999999999999887333 346799999887654444332221 255689999999999875322
Q ss_pred CccEEEEccccccCChhHHHHHHHHHHHccCCC
Q 002218 794 GFDIGTCLEVIEHMEEDEASQFGNIVLSSFRPR 826 (952)
Q Consensus 794 sFDVVVcieVIEHL~dD~l~~L~eeI~RvLKPG 826 (952)
.||+|++-.+ ..+..+.+-+..++|+|
T Consensus 135 ~~D~vtsRAv------a~L~~l~e~~~pllk~~ 161 (215)
T COG0357 135 QYDVVTSRAV------ASLNVLLELCLPLLKVG 161 (215)
T ss_pred cCcEEEeehc------cchHHHHHHHHHhcccC
Confidence 2999999877 55566777788889986
No 241
>PF01189 Nol1_Nop2_Fmu: NOL1/NOP2/sun family; InterPro: IPR001678 This domain is found in archaeal, bacterial and eukaryotic proteins. In the archaea and bacteria, they are annotated as putative nucleolar protein, Sun (Fmu) family protein or tRNA/rRNA cytosine-C5-methylase. The majority have the S-adenosyl methionine (SAM) binding domain and are related to Escherichia coli Fmu (Sun) protein (16S rRNA m5C 967 methyltransferase) whose structure has been determined []. In the eukaryota, the majority are annotated as being 'hypothetical protein', nucleolar protein or the Nop2/Sun (Fmu) family. Unlike their bacterial homologues, few of the eukaryotic members in this family have a the SAM binding signature. Despite this, Saccharomyces cerevisiae (Baker's yeast) Nop2p is a probable RNA m5C methyltransferase []. It is essential for processing and maturation of 27S pre-rRNA and large ribosomal subunit biogenesis []; localized to the nucleolus and is essential for viability []. Reduced Nop2p expression limits yeast growth and decreases levels of mature 60S ribosomal subunits while altering rRNA processing []. There is substantial identity between Nop2p and Homo sapiens (Human) p120 (NOL1), which is also called the proliferation-associated nucleolar antigen [, ].; PDB: 3M4X_A 2FRX_B 2YXL_A 1IXK_A 1SQG_A 1SQF_A 3M6U_B 3M6V_B 3M6W_A 3M6X_A ....
Probab=95.89 E-value=0.039 Score=60.79 Aligned_cols=119 Identities=18% Similarity=0.201 Sum_probs=85.6
Q ss_pred HHHHHHhhcCCCCEEEEEcCccchHHHHHhcCCCCCceEEEEeCChHHHHHHHHHHhhhhhcccccCCCCCCCccEEEEE
Q 002218 703 EYALQHIKESCATTLVDFGCGSGSLLDSLLDYPTALEKIVGVDISQKSLSRAAKIIHSKLSKKLDAAVPCTDVKSAVLFD 782 (952)
Q Consensus 703 efVldlL~~~k~krVLDIGCGeG~ll~~LAr~g~~~~qVVGVDISeemLe~ArkrLsa~la~~~~~l~Pr~~~~nVtf~q 782 (952)
..+...+...++.+|||+.+|.|.-+..+++.......|++.|++..-+...++++.. .+..++....
T Consensus 75 ~l~~~~L~~~~~~~VLD~CAapGgKt~~la~~~~~~g~i~A~D~~~~Rl~~l~~~~~r------------~g~~~v~~~~ 142 (283)
T PF01189_consen 75 QLVALALDPQPGERVLDMCAAPGGKTTHLAELMGNKGEIVANDISPKRLKRLKENLKR------------LGVFNVIVIN 142 (283)
T ss_dssp HHHHHHHTTTTTSEEEESSCTTSHHHHHHHHHTTTTSEEEEEESSHHHHHHHHHHHHH------------TT-SSEEEEE
T ss_pred ccccccccccccccccccccCCCCceeeeeecccchhHHHHhccCHHHHHHHHHHHHh------------cCCceEEEEe
Confidence 3445566777889999999999999988887654457999999999999988877652 3556888888
Q ss_pred cCccccCC--CCCCccEEEE------ccccccCCh--------------hHHHHHHHHHHHcc----CCC-EEEEEec
Q 002218 783 GSITVFDS--RLHGFDIGTC------LEVIEHMEE--------------DEASQFGNIVLSSF----RPR-ILIVSTP 833 (952)
Q Consensus 783 GDa~dLpf--~d~sFDVVVc------ieVIEHL~d--------------D~l~~L~eeI~RvL----KPG-~LIISTP 833 (952)
.|...... ....||.|+. .+++.+-++ ..+..+.+...+++ ||| .++-+|-
T Consensus 143 ~D~~~~~~~~~~~~fd~VlvDaPCSg~G~i~r~p~~~~~~~~~~~~~l~~~Q~~iL~~a~~~~~~~~k~gG~lvYsTC 220 (283)
T PF01189_consen 143 ADARKLDPKKPESKFDRVLVDAPCSGLGTIRRNPDIKWRRSPEDIEKLAELQREILDNAAKLLNIDFKPGGRLVYSTC 220 (283)
T ss_dssp SHHHHHHHHHHTTTEEEEEEECSCCCGGGTTTCTTHHHHE-TTHHHHHHHHHHHHHHHHHHCEHHHBEEEEEEEEEES
T ss_pred eccccccccccccccchhhcCCCccchhhhhhccchhhcccccccchHHHHHHHHHHHHHHhhcccccCCCeEEEEec
Confidence 88877632 2346999997 334444331 11234556789999 999 7777775
No 242
>KOG2187 consensus tRNA uracil-5-methyltransferase and related tRNA-modifying enzymes [Translation, ribosomal structure and biogenesis]
Probab=95.87 E-value=0.013 Score=69.11 Aligned_cols=77 Identities=19% Similarity=0.277 Sum_probs=63.6
Q ss_pred hHHHHHHHHHHHhhcCCCCEEEEEcCccchHHHHHhcCCCCCceEEEEeCChHHHHHHHHHHhhhhhcccccCCCCCCCc
Q 002218 697 LSKQRVEYALQHIKESCATTLVDFGCGSGSLLDSLLDYPTALEKIVGVDISQKSLSRAAKIIHSKLSKKLDAAVPCTDVK 776 (952)
Q Consensus 697 L~~QR~efVldlL~~~k~krVLDIGCGeG~ll~~LAr~g~~~~qVVGVDISeemLe~ArkrLsa~la~~~~~l~Pr~~~~ 776 (952)
..+--|.++-+.+....++.++|+-||+|.+...+++.. .+|+||++++++++.|+++.. ..+..
T Consensus 367 ~aevLys~i~e~~~l~~~k~llDv~CGTG~iglala~~~---~~ViGvEi~~~aV~dA~~nA~------------~Ngis 431 (534)
T KOG2187|consen 367 AAEVLYSTIGEWAGLPADKTLLDVCCGTGTIGLALARGV---KRVIGVEISPDAVEDAEKNAQ------------INGIS 431 (534)
T ss_pred HHHHHHHHHHHHhCCCCCcEEEEEeecCCceehhhhccc---cceeeeecChhhcchhhhcch------------hcCcc
Confidence 344456677777777778999999999999999999876 799999999999999987643 35778
Q ss_pred cEEEEEcCcccc
Q 002218 777 SAVLFDGSITVF 788 (952)
Q Consensus 777 nVtf~qGDa~dL 788 (952)
|.+|++|-++++
T Consensus 432 Na~Fi~gqaE~~ 443 (534)
T KOG2187|consen 432 NATFIVGQAEDL 443 (534)
T ss_pred ceeeeecchhhc
Confidence 999999966654
No 243
>COG0742 N6-adenine-specific methylase [DNA replication, recombination, and repair]
Probab=95.82 E-value=0.15 Score=53.73 Aligned_cols=126 Identities=13% Similarity=0.078 Sum_probs=83.5
Q ss_pred hhHHHHHHHHHHHhhc--CCCCEEEEEcCccchHHHHHhcCCCCCceEEEEeCChHHHHHHHHHHhhhhhcccccCCCCC
Q 002218 696 PLSKQRVEYALQHIKE--SCATTLVDFGCGSGSLLDSLLDYPTALEKIVGVDISQKSLSRAAKIIHSKLSKKLDAAVPCT 773 (952)
Q Consensus 696 PL~~QR~efVldlL~~--~k~krVLDIGCGeG~ll~~LAr~g~~~~qVVGVDISeemLe~ArkrLsa~la~~~~~l~Pr~ 773 (952)
|....-.+.+.+++.. ..+.++||+=+|+|.++...+-+|. .+++.||.+..++...++++... +
T Consensus 24 PT~drVREalFNil~~~~i~g~~~LDlFAGSGaLGlEAlSRGA--~~~~~vE~~~~a~~~l~~N~~~l-----------~ 90 (187)
T COG0742 24 PTTDRVREALFNILAPDEIEGARVLDLFAGSGALGLEALSRGA--ARVVFVEKDRKAVKILKENLKAL-----------G 90 (187)
T ss_pred CCchHHHHHHHHhccccccCCCEEEEecCCccHhHHHHHhCCC--ceEEEEecCHHHHHHHHHHHHHh-----------C
Confidence 3344445566667665 6889999999999999988887775 89999999999999998886532 1
Q ss_pred CCccEEEEEcCccccC--CCC-CCccEEEEccccc-cCChhHHHHHHHHHHHccCCC-EEEEEecC
Q 002218 774 DVKSAVLFDGSITVFD--SRL-HGFDIGTCLEVIE-HMEEDEASQFGNIVLSSFRPR-ILIVSTPN 834 (952)
Q Consensus 774 ~~~nVtf~qGDa~dLp--f~d-~sFDVVVcieVIE-HL~dD~l~~L~eeI~RvLKPG-~LIISTPN 834 (952)
...+.+++.+|+...- ... ..||+|+.-==.+ -+.+.......-.-.++|+|+ .+++-+..
T Consensus 91 ~~~~~~~~~~da~~~L~~~~~~~~FDlVflDPPy~~~l~~~~~~~~~~~~~~~L~~~~~iv~E~~~ 156 (187)
T COG0742 91 LEGEARVLRNDALRALKQLGTREPFDLVFLDPPYAKGLLDKELALLLLEENGWLKPGALIVVEHDK 156 (187)
T ss_pred CccceEEEeecHHHHHHhcCCCCcccEEEeCCCCccchhhHHHHHHHHHhcCCcCCCcEEEEEeCC
Confidence 2347888888887531 122 2499998732222 111122222221236789999 66665554
No 244
>PF01234 NNMT_PNMT_TEMT: NNMT/PNMT/TEMT family; InterPro: IPR000940 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. Several cytoplasmic vertebrate methyltransferases are evolutionary related [], including nicotinamide N-methyltransferase (2.1.1.1 from EC) (NNMT); phenylethanolamine N-methyltransferase (2.1.1.28 from EC) (PNMT); and thioether S-methyltransferase (2.1.1.96 from EC) (TEMT). NNMT catalyzes the N-methylation of nicotinamide and other pyridines to form pyridinium ions. This activity is important for the biotransformation of many drugs and xenobiotic compounds. PNMT catalyzes the last step in catecholamine biosynthesis, the conversion of noradrenalin to adrenalin; and TEMT catalyzes the methylation of dimethyl sulphide into trimethylsulphonium. These three enzymes use S-adenosyl-L-methionine as the methyl donor. They are proteins of 30 to 32 kDa.; GO: 0008168 methyltransferase activity; PDB: 2IIP_C 3ROD_A 2OBF_A 3HCA_B 2ONY_B 3KR1_A 2OPB_B 3KQP_B 2AN4_B 3KQM_A ....
Probab=95.51 E-value=0.14 Score=56.11 Aligned_cols=114 Identities=18% Similarity=0.124 Sum_probs=66.6
Q ss_pred CCCEEEEEcCccchHHH-HHhcCCCCCceEEEEeCChHHHHHHHHHHhhhhhcc-----cc---cCC-CCCC--------
Q 002218 713 CATTLVDFGCGSGSLLD-SLLDYPTALEKIVGVDISQKSLSRAAKIIHSKLSKK-----LD---AAV-PCTD-------- 774 (952)
Q Consensus 713 k~krVLDIGCGeG~ll~-~LAr~g~~~~qVVGVDISeemLe~ArkrLsa~la~~-----~~---~l~-Pr~~-------- 774 (952)
++.++||||||.-.+-. .+.+.. .+|+..|.++..++..++.++.. ... .. .++ .+..
T Consensus 56 ~g~~llDiGsGPtiy~~lsa~~~f---~~I~l~dy~~~N~~el~kWl~~~-~a~DWs~~~~~v~~lEg~~~~~~e~e~~l 131 (256)
T PF01234_consen 56 KGETLLDIGSGPTIYQLLSACEWF---EEIVLSDYSEQNREELEKWLRKE-GAFDWSPFWKYVCELEGKREKWEEKEEKL 131 (256)
T ss_dssp -EEEEEEES-TT--GGGTTGGGTE---EEEEEEESSHHHHHHHHHHHTT--TS--THHHHHHHHHHTTSSSGHHHHHHHH
T ss_pred CCCEEEEeCCCcHHHhhhhHHHhh---cceEEeeccHhhHHHHHHHHCCC-CCCCccHHHHHHHhccCCcchhhhHHHHH
Confidence 56799999999866532 223333 78999999999998777766532 110 00 000 0100
Q ss_pred CccE-EEEEcCccccCCCC------CCccEEEEccccccCChhH--HHHHHHHHHHccCCC-EEEE
Q 002218 775 VKSA-VLFDGSITVFDSRL------HGFDIGTCLEVIEHMEEDE--ASQFGNIVLSSFRPR-ILIV 830 (952)
Q Consensus 775 ~~nV-tf~qGDa~dLpf~d------~sFDVVVcieVIEHL~dD~--l~~L~eeI~RvLKPG-~LII 830 (952)
-..| .++.+|+.+.++-. ..||+|++...+|-.-.+. -....+++.++|||| .+|+
T Consensus 132 R~~Vk~Vv~cDV~~~~pl~~~~~~p~~~D~v~s~fcLE~a~~d~~~y~~al~ni~~lLkpGG~Lil 197 (256)
T PF01234_consen 132 RRAVKQVVPCDVTQPNPLDPPVVLPPKFDCVISSFCLESACKDLDEYRRALRNISSLLKPGGHLIL 197 (256)
T ss_dssp HHHEEEEEE--TTSSSTTTTS-SS-SSEEEEEEESSHHHH-SSHHHHHHHHHHHHTTEEEEEEEEE
T ss_pred HHhhceEEEeeccCCCCCCccccCccchhhhhhhHHHHHHcCCHHHHHHHHHHHHHHcCCCcEEEE
Confidence 0124 47788987754322 2499999999999887443 233345799999999 4444
No 245
>COG2384 Predicted SAM-dependent methyltransferase [General function prediction only]
Probab=95.41 E-value=0.2 Score=53.91 Aligned_cols=118 Identities=11% Similarity=0.050 Sum_probs=82.5
Q ss_pred HHHHHHHHHHhhcCCCCEEEEEcCccchHHHHHhcCCCCCceEEEEeCChHHHHHHHHHHhhhhhcccccCCCCCCCccE
Q 002218 699 KQRVEYALQHIKESCATTLVDFGCGSGSLLDSLLDYPTALEKIVGVDISQKSLSRAAKIIHSKLSKKLDAAVPCTDVKSA 778 (952)
Q Consensus 699 ~QR~efVldlL~~~k~krVLDIGCGeG~ll~~LAr~g~~~~qVVGVDISeemLe~ArkrLsa~la~~~~~l~Pr~~~~nV 778 (952)
..|...+.+.++. +.++.||||--|++..+|.+.+ +...+++.|+++..++.|.+.+.+ ....+.+
T Consensus 4 ~~RL~~va~~V~~--~~~iaDIGsDHAYLp~~Lv~~~-~~~~~va~eV~~gpl~~a~~~v~~-----------~~l~~~i 69 (226)
T COG2384 4 SKRLTTVANLVKQ--GARIADIGSDHAYLPIYLVKNN-PASTAVAGEVVPGPLESAIRNVKK-----------NNLSERI 69 (226)
T ss_pred hHHHHHHHHHHHc--CCceeeccCchhHhHHHHHhcC-CcceEEEeecccCHHHHHHHHHHh-----------cCCcceE
Confidence 3588888888874 4459999999999999999987 568899999999999999888753 2345688
Q ss_pred EEEEcCccccCCCCCCccEEEEccccccCChhHHHHHHHHHHHccCCCEEEEEecC
Q 002218 779 VLFDGSITVFDSRLHGFDIGTCLEVIEHMEEDEASQFGNIVLSSFRPRILIVSTPN 834 (952)
Q Consensus 779 tf~qGDa~dLpf~d~sFDVVVcieVIEHL~dD~l~~L~eeI~RvLKPG~LIISTPN 834 (952)
+...+|....--.+..+|+|+..++ .-.-...+.++-...|+--.-+|--||
T Consensus 70 ~vr~~dgl~~l~~~d~~d~ivIAGM----GG~lI~~ILee~~~~l~~~~rlILQPn 121 (226)
T COG2384 70 DVRLGDGLAVLELEDEIDVIVIAGM----GGTLIREILEEGKEKLKGVERLILQPN 121 (226)
T ss_pred EEeccCCccccCccCCcCEEEEeCC----cHHHHHHHHHHhhhhhcCcceEEECCC
Confidence 9999998432223447999977654 323334444445555542223344455
No 246
>TIGR00006 S-adenosyl-methyltransferase MraW. Genetics paper in 1972 links mra cluster to peptidoglycan biosynthesis in E. coli. Seems to be common in proteobacteria.wn.
Probab=95.37 E-value=0.046 Score=61.25 Aligned_cols=85 Identities=13% Similarity=0.175 Sum_probs=65.0
Q ss_pred HHHHHHHhhcCCCCEEEEEcCccchHHHHHhcCCCCCceEEEEeCChHHHHHHHHHHhhhhhcccccCCCCCCCccEEEE
Q 002218 702 VEYALQHIKESCATTLVDFGCGSGSLLDSLLDYPTALEKIVGVDISQKSLSRAAKIIHSKLSKKLDAAVPCTDVKSAVLF 781 (952)
Q Consensus 702 ~efVldlL~~~k~krVLDIGCGeG~ll~~LAr~g~~~~qVVGVDISeemLe~ArkrLsa~la~~~~~l~Pr~~~~nVtf~ 781 (952)
.+.+++.+...++..++|-=||.|..+..+++..+. .+|+|+|.++.+++.|++++... ..++.++
T Consensus 9 l~Evl~~L~~~~ggiyVD~TlG~GGHS~~iL~~l~~-g~vigiD~D~~Al~~ak~~L~~~-------------~~R~~~i 74 (305)
T TIGR00006 9 LDEVVEGLNIKPDGIYIDCTLGFGGHSKAILEQLGT-GRLIGIDRDPQAIAFAKERLSDF-------------EGRVVLI 74 (305)
T ss_pred HHHHHHhcCcCCCCEEEEeCCCChHHHHHHHHhCCC-CEEEEEcCCHHHHHHHHHHHhhc-------------CCcEEEE
Confidence 345666666667789999999999999999987533 89999999999999999877531 2368888
Q ss_pred EcCccccCC-----CCCCccEEEE
Q 002218 782 DGSITVFDS-----RLHGFDIGTC 800 (952)
Q Consensus 782 qGDa~dLpf-----~d~sFDVVVc 800 (952)
+++..++.. ...++|.|+.
T Consensus 75 ~~nF~~l~~~l~~~~~~~vDgIl~ 98 (305)
T TIGR00006 75 HDNFANFFEHLDELLVTKIDGILV 98 (305)
T ss_pred eCCHHHHHHHHHhcCCCcccEEEE
Confidence 888876532 2245777776
No 247
>PRK12371 ribonuclease III; Reviewed
Probab=95.34 E-value=0.037 Score=59.69 Aligned_cols=69 Identities=28% Similarity=0.401 Sum_probs=50.4
Q ss_pred CCChHhHHHHh----ccCceeEEEeeeeccccCCCCccccCCCCCceEEEeeecCCceeeeccccccchHHHHHHHHHHH
Q 002218 15 KLTPKAIIVQK----FGRNAQFTVDEVQDVVQNGCPGLAIPQKGPCLYRCSLQLPEFSVVSETFKKKKDAEQSAAEKALE 90 (952)
Q Consensus 15 ~~tpka~~~q~----~g~~~~y~~~ev~~~~~~~~~~~~~~q~~~~~~~c~l~lp~~~v~~~~~~~kkdaeq~aa~~al~ 90 (952)
..-||-.+.+. .+..-.|++.+.. . |+..| .|.|.+.+.+-...+|.=+.||+|||.||+.||+
T Consensus 160 ~~d~Ks~LqE~~q~~~~~~p~Y~~~~~~-G----------p~h~~-~F~v~v~v~~~~~~~g~G~sKK~Ae~~AA~~al~ 227 (235)
T PRK12371 160 RRDAKTELQEWAHAQFGVTPVYRVDSRS-G----------PDHDP-RFTVEVEVKGFAPETGEGRSKRAAEQVAAEKMLE 227 (235)
T ss_pred cCCHHHHHHHHHHhcCCCCCeEEEEEee-c----------CCCCC-eEEEEEEECCEEEEEeeeCCHHHHHHHHHHHHHH
Confidence 44677665433 3444678876422 1 23333 9999999988766678889999999999999999
Q ss_pred HcCCC
Q 002218 91 KLGID 95 (952)
Q Consensus 91 klg~~ 95 (952)
+||++
T Consensus 228 ~~~~~ 232 (235)
T PRK12371 228 REGVW 232 (235)
T ss_pred Hhhhh
Confidence 99984
No 248
>KOG2915 consensus tRNA(1-methyladenosine) methyltransferase, subunit GCD14 [Translation, ribosomal structure and biogenesis]
Probab=95.31 E-value=0.11 Score=57.55 Aligned_cols=119 Identities=10% Similarity=0.056 Sum_probs=88.3
Q ss_pred HHHHHHHHHhhcCCCCEEEEEcCccchHHHHHhcCCCCCceEEEEeCChHHHHHHHHHHhhhhhcccccCCCCCCCccEE
Q 002218 700 QRVEYALQHIKESCATTLVDFGCGSGSLLDSLLDYPTALEKIVGVDISQKSLSRAAKIIHSKLSKKLDAAVPCTDVKSAV 779 (952)
Q Consensus 700 QR~efVldlL~~~k~krVLDIGCGeG~ll~~LAr~g~~~~qVVGVDISeemLe~ArkrLsa~la~~~~~l~Pr~~~~nVt 779 (952)
.-..+|..+|+..++.+|++-|.|+|.++.++++.-++..+++-+|+.+.-.+.|.+.+... +-..+++
T Consensus 92 ~Dia~I~~~L~i~PGsvV~EsGTGSGSlShaiaraV~ptGhl~tfefH~~Ra~ka~eeFr~h-----------gi~~~vt 160 (314)
T KOG2915|consen 92 PDIAMILSMLEIRPGSVVLESGTGSGSLSHAIARAVAPTGHLYTFEFHETRAEKALEEFREH-----------GIGDNVT 160 (314)
T ss_pred ccHHHHHHHhcCCCCCEEEecCCCcchHHHHHHHhhCcCcceEEEEecHHHHHHHHHHHHHh-----------CCCcceE
Confidence 34457888889899999999999999999999998777889999999888888887766431 3456899
Q ss_pred EEEcCccccCCC--CCCccEEEEccccccCChhHHHHHHHHHHHccCCC--EEEEEecCCc
Q 002218 780 LFDGSITVFDSR--LHGFDIGTCLEVIEHMEEDEASQFGNIVLSSFRPR--ILIVSTPNYE 836 (952)
Q Consensus 780 f~qGDa~dLpf~--d~sFDVVVcieVIEHL~dD~l~~L~eeI~RvLKPG--~LIISTPN~e 836 (952)
+.+-|+...-|. ...+|+|+. -|+ .+..++. .++.+||.+ .++-.+|..+
T Consensus 161 ~~hrDVc~~GF~~ks~~aDaVFL-----DlP-aPw~AiP-ha~~~lk~~g~r~csFSPCIE 214 (314)
T KOG2915|consen 161 VTHRDVCGSGFLIKSLKADAVFL-----DLP-APWEAIP-HAAKILKDEGGRLCSFSPCIE 214 (314)
T ss_pred EEEeecccCCccccccccceEEE-----cCC-Chhhhhh-hhHHHhhhcCceEEeccHHHH
Confidence 999999876553 467888865 233 3334444 366677775 5555666543
No 249
>COG0293 FtsJ 23S rRNA methylase [Translation, ribosomal structure and biogenesis]
Probab=95.29 E-value=0.18 Score=53.80 Aligned_cols=109 Identities=18% Similarity=0.215 Sum_probs=71.3
Q ss_pred CCCEEEEEcCccchHHHHHhcCCCCCceEEEEeCChHHHHHHHHHHhhhhhcccccCCCCCCCccEEEEEcCccccCC--
Q 002218 713 CATTLVDFGCGSGSLLDSLLDYPTALEKIVGVDISQKSLSRAAKIIHSKLSKKLDAAVPCTDVKSAVLFDGSITVFDS-- 790 (952)
Q Consensus 713 k~krVLDIGCGeG~ll~~LAr~g~~~~qVVGVDISeemLe~ArkrLsa~la~~~~~l~Pr~~~~nVtf~qGDa~dLpf-- 790 (952)
++..|+|||+..|.++..+++..+....|+|+|+.+- ...++|.++++|+++-+.
T Consensus 45 ~~~~ViDLGAAPGgWsQva~~~~~~~~~ivavDi~p~-----------------------~~~~~V~~iq~d~~~~~~~~ 101 (205)
T COG0293 45 PGMVVVDLGAAPGGWSQVAAKKLGAGGKIVAVDILPM-----------------------KPIPGVIFLQGDITDEDTLE 101 (205)
T ss_pred CCCEEEEcCCCCCcHHHHHHHHhCCCCcEEEEECccc-----------------------ccCCCceEEeeeccCccHHH
Confidence 5789999999999999999887654456999998552 122469999999987543
Q ss_pred ------CCCCccEEEEc--------cccccCChhHH-HHHHHHHHHccCCC-EEEE-EecCCchhHHHHhh
Q 002218 791 ------RLHGFDIGTCL--------EVIEHMEEDEA-SQFGNIVLSSFRPR-ILIV-STPNYEYNAILQKS 844 (952)
Q Consensus 791 ------~d~sFDVVVci--------eVIEHL~dD~l-~~L~eeI~RvLKPG-~LII-STPN~efN~lf~~L 844 (952)
....+|+|+|- ..+.|...-.+ ....+....+|+|| .+++ ..-..+++.++..+
T Consensus 102 ~l~~~l~~~~~DvV~sD~ap~~~g~~~~Dh~r~~~L~~~a~~~a~~vL~~~G~fv~K~fqg~~~~~~l~~~ 172 (205)
T COG0293 102 KLLEALGGAPVDVVLSDMAPNTSGNRSVDHARSMYLCELALEFALEVLKPGGSFVAKVFQGEDFEDLLKAL 172 (205)
T ss_pred HHHHHcCCCCcceEEecCCCCcCCCccccHHHHHHHHHHHHHHHHHeeCCCCeEEEEEEeCCCHHHHHHHH
Confidence 23347999972 22344332222 22234456799998 5544 44455666665543
No 250
>PHA03103 double-strand RNA-binding protein; Provisional
Probab=95.28 E-value=0.037 Score=57.89 Aligned_cols=40 Identities=23% Similarity=0.366 Sum_probs=35.7
Q ss_pred CCCCceEEEeeecCCceeeeccccccchHHHHHHHHHHHHc
Q 002218 52 QKGPCLYRCSLQLPEFSVVSETFKKKKDAEQSAAEKALEKL 92 (952)
Q Consensus 52 q~~~~~~~c~l~lp~~~v~~~~~~~kkdaeq~aa~~al~kl 92 (952)
...| .|.|.+.+.+-...+|.=+-||.|||.||+.||++|
T Consensus 136 ~H~p-~F~v~V~I~g~~~g~G~G~SKKeAEQ~AAk~AL~~L 175 (183)
T PHA03103 136 SHSP-TFTASVIISGIKFKPAIGSTKKEAKNNAAKLAMDKI 175 (183)
T ss_pred CCCc-eEEEEEEECCEEEEEeeeCCHHHHHHHHHHHHHHHH
Confidence 3355 899999999988888888999999999999999997
No 251
>PHA02701 ORF020 dsRNA-binding PKR inhibitor; Provisional
Probab=95.18 E-value=0.039 Score=57.63 Aligned_cols=69 Identities=22% Similarity=0.256 Sum_probs=50.2
Q ss_pred CCChHhHHH---HhccCceeEEEeeeeccccCCCCccccCCCCCceEEEeeecCCceeeeccccccchHHHHHHHHHHHH
Q 002218 15 KLTPKAIIV---QKFGRNAQFTVDEVQDVVQNGCPGLAIPQKGPCLYRCSLQLPEFSVVSETFKKKKDAEQSAAEKALEK 91 (952)
Q Consensus 15 ~~tpka~~~---q~~g~~~~y~~~ev~~~~~~~~~~~~~~q~~~~~~~c~l~lp~~~v~~~~~~~kkdaeq~aa~~al~k 91 (952)
..-||-.+. |+.|..-.|++.+.. - |.-.| .|.+.+-+-+....+|.=+-||+|||.||+.||++
T Consensus 107 ~~DpKS~LQE~~Q~~~~~l~Y~li~~~--G---------pdH~~-~Ftv~V~V~g~~~g~G~G~SKKeAEQ~AAk~AL~~ 174 (183)
T PHA02701 107 TLNPVSAVNEFCMRTHRPLEFCETRSG--G---------HDHCP-LFTCTIVVSGKVVATASGCSKKLARHAACADALTI 174 (183)
T ss_pred CCCccHHHHHHHHhcCCCCeEEEEEeE--C---------CCCCc-eEEEEEEECCEEEEEEEeCCHHHHHHHHHHHHHHH
Confidence 456776654 455554578654322 1 33344 89999999887777888899999999999999999
Q ss_pred cCCC
Q 002218 92 LGID 95 (952)
Q Consensus 92 lg~~ 95 (952)
|...
T Consensus 175 L~~~ 178 (183)
T PHA02701 175 LINN 178 (183)
T ss_pred HHhh
Confidence 8543
No 252
>PF07091 FmrO: Ribosomal RNA methyltransferase (FmrO); PDB: 3LCU_A 3LCV_B 3FRH_A 3FRI_A 3B89_A 3FZG_A.
Probab=95.11 E-value=0.078 Score=57.93 Aligned_cols=107 Identities=14% Similarity=0.122 Sum_probs=69.5
Q ss_pred CCCEEEEEcCccchHHHHHhcCCCCCceEEEEeCChHHHHHHHHHHhhhhhcccccCCCCCCCccEEEEEcCccccCCCC
Q 002218 713 CATTLVDFGCGSGSLLDSLLDYPTALEKIVGVDISQKSLSRAAKIIHSKLSKKLDAAVPCTDVKSAVLFDGSITVFDSRL 792 (952)
Q Consensus 713 k~krVLDIGCGeG~ll~~LAr~g~~~~qVVGVDISeemLe~ArkrLsa~la~~~~~l~Pr~~~~nVtf~qGDa~dLpf~d 792 (952)
.+.+|+|||||-=-++....... +...++|+||+..+++...+.+... ..+.+....|+..-+ ..
T Consensus 105 ~p~sVlDigCGlNPlalp~~~~~-~~a~Y~a~DID~~~ve~l~~~l~~l-------------~~~~~~~v~Dl~~~~-~~ 169 (251)
T PF07091_consen 105 PPDSVLDIGCGLNPLALPWMPEA-PGATYIAYDIDSQLVEFLNAFLAVL-------------GVPHDARVRDLLSDP-PK 169 (251)
T ss_dssp --SEEEEET-TTCHHHHHTTTSS-TT-EEEEEESBHHHHHHHHHHHHHT-------------T-CEEEEEE-TTTSH-TT
T ss_pred CCchhhhhhccCCceehhhcccC-CCcEEEEEeCCHHHHHHHHHHHHhh-------------CCCcceeEeeeeccC-CC
Confidence 47899999999988887665544 3479999999999999987654321 125566666765432 34
Q ss_pred CCccEEEEccccccCChhHHHHHHHHHHHccCCCEEEEEecCC
Q 002218 793 HGFDIGTCLEVIEHMEEDEASQFGNIVLSSFRPRILIVSTPNY 835 (952)
Q Consensus 793 ~sFDVVVcieVIEHL~dD~l~~L~eeI~RvLKPG~LIISTPN~ 835 (952)
...|+.+..=+++-|...+...-. .+...++-..++|+.|-.
T Consensus 170 ~~~DlaLllK~lp~le~q~~g~g~-~ll~~~~~~~~vVSfPtr 211 (251)
T PF07091_consen 170 EPADLALLLKTLPCLERQRRGAGL-ELLDALRSPHVVVSFPTR 211 (251)
T ss_dssp SEESEEEEET-HHHHHHHSTTHHH-HHHHHSCESEEEEEEES-
T ss_pred CCcchhhHHHHHHHHHHHhcchHH-HHHHHhCCCeEEEecccc
Confidence 578999998888877633322223 356666656888998864
No 253
>COG4262 Predicted spermidine synthase with an N-terminal membrane domain [General function prediction only]
Probab=95.03 E-value=0.16 Score=58.16 Aligned_cols=160 Identities=19% Similarity=0.231 Sum_probs=99.6
Q ss_pred hhhccCcccchhcccccccccceeeeecc--cCC-----C-----------------hhhhhhhhcCCchhHHHHHHHHH
Q 002218 651 LAAADDSARTFSLLSSRACCLEYHITLLR--VTE-----P-----------------PEDRMEQALFSPPLSKQRVEYAL 706 (952)
Q Consensus 651 lAa~~~~~~DiSlLs~d~~~LEyyI~LL~--v~e-----p-----------------~EeRye~~~F~PPL~~QR~efVl 706 (952)
+|+..-++.+|..-+++..+-|--|+..+ .|+ - .|.||.+..-+|++..
T Consensus 214 lat~~v~s~rit~~~eqqlygdeIIh~~qspYQ~iVvTr~g~d~rLYldG~LQfsTrDe~RYhEsLV~pals~------- 286 (508)
T COG4262 214 LATGLVASDRITHTSEQQLYGDEIIHAIQSPYQRIVVTRRGDDLRLYLDGGLQFSTRDEYRYHESLVYPALSS------- 286 (508)
T ss_pred HHHHHhcccceeehHHHHhhcCceeeeccCccceEEEEEecCceEEEEcCceeeeechhhhhhheeeeccccc-------
Confidence 55556677778777777776665555542 111 1 1233333333333321
Q ss_pred HHhhcCCCCEEEEEcCccchHHHHHhcCCCCCceEEEEeCChHHHHHHHHHHhhhhhcccccCCCCCCCccEEEEEcCcc
Q 002218 707 QHIKESCATTLVDFGCGSGSLLDSLLDYPTALEKIVGVDISQKSLSRAAKIIHSKLSKKLDAAVPCTDVKSAVLFDGSIT 786 (952)
Q Consensus 707 dlL~~~k~krVLDIGCGeG~ll~~LAr~g~~~~qVVGVDISeemLe~ArkrLsa~la~~~~~l~Pr~~~~nVtf~qGDa~ 786 (952)
.....+||-+|-|.|--++.|.+++ ...+|+-||.+++|++.+++... +.+. .+..-..++++.+..|+.
T Consensus 287 ----~~~a~~vLvlGGGDGLAlRellkyP-~~~qI~lVdLDP~miela~~~~v--lr~~---N~~sf~dpRv~Vv~dDAf 356 (508)
T COG4262 287 ----VRGARSVLVLGGGDGLALRELLKYP-QVEQITLVDLDPRMIELASHATV--LRAL---NQGSFSDPRVTVVNDDAF 356 (508)
T ss_pred ----ccccceEEEEcCCchHHHHHHHhCC-CcceEEEEecCHHHHHHhhhhhH--hhhh---ccCCccCCeeEEEeccHH
Confidence 1255799999999999999999986 57899999999999999984321 1100 011234568999999987
Q ss_pred ccCC-CCCCccEEEE------ccccccCChhHHHHHHHHHHHccCCC-EEEE
Q 002218 787 VFDS-RLHGFDIGTC------LEVIEHMEEDEASQFGNIVLSSFRPR-ILIV 830 (952)
Q Consensus 787 dLpf-~d~sFDVVVc------ieVIEHL~dD~l~~L~eeI~RvLKPG-~LII 830 (952)
++-. ....||+|+. ..++-.+.. ..|..-+.+.|+++ .+++
T Consensus 357 ~wlr~a~~~fD~vIVDl~DP~tps~~rlYS---~eFY~ll~~~l~e~Gl~Vv 405 (508)
T COG4262 357 QWLRTAADMFDVVIVDLPDPSTPSIGRLYS---VEFYRLLSRHLAETGLMVV 405 (508)
T ss_pred HHHHhhcccccEEEEeCCCCCCcchhhhhh---HHHHHHHHHhcCcCceEEE
Confidence 6532 3458999875 222323321 13334578889998 4444
No 254
>PF03514 GRAS: GRAS domain family; InterPro: IPR005202 Sequence analysis of the products of the GRAS (GAI, RGA, SCR) gene family indicates that they share a variable N terminus and a highly conserved C terminus that contains five recognizable motifs []. Proteins in the GRAS family are transcription factors that seem to be involved in development and other processes. Mutation of the SCARECROW (SCR) gene results in a radial pattern defect, loss of a ground tissue layer, in the root. The PAT1 protein is involved in phytochrome A signal transduction []. GRAS proteins contain a conserved region of about 350 amino acids that can be divided in 5 motifs, found in the following order: leucine heptad repeat I, the VHIID motif, leucine heptad repeat II, the PFYRE motif and the SAW motif [, ]. Plant specific GRAS proteins have parallels in their motif structure to the animal Signal Transducers and Activators of Transcription (STAT) family of proteins [] which suggests also some parallels in their functions.
Probab=94.54 E-value=0.25 Score=56.65 Aligned_cols=126 Identities=17% Similarity=0.279 Sum_probs=83.4
Q ss_pred HHHHHHhhcCCCCEEEEEcCccchHH----HHHhcC--CCCCceEEEEeC----ChHHHHHHHHHHhhhhhcccccCCCC
Q 002218 703 EYALQHIKESCATTLVDFGCGSGSLL----DSLLDY--PTALEKIVGVDI----SQKSLSRAAKIIHSKLSKKLDAAVPC 772 (952)
Q Consensus 703 efVldlL~~~k~krVLDIGCGeG~ll----~~LAr~--g~~~~qVVGVDI----SeemLe~ArkrLsa~la~~~~~l~Pr 772 (952)
+.|++.+...+.-+|+|+|.|.|.-. ..|+.+ +++.-+||||+. +...++.+.+++.......
T Consensus 100 qaIleA~~g~~~vHIID~~i~~G~QW~~LiqaLa~R~~gpp~LrIT~i~~~~~~~~~~l~~~g~rL~~fA~~l------- 172 (374)
T PF03514_consen 100 QAILEAFEGERRVHIIDFGIGFGVQWPSLIQALASRPGGPPSLRITGIGPPNSGSADELQETGRRLAEFARSL------- 172 (374)
T ss_pred HHHHHHhccCcceEEEeccCCcchHHHHHHHHHhcCCCCCCeEEEEeccCCCCCcHHHHHHHHHHHHHHHHHc-------
Confidence 44566666666679999999998754 445543 346689999999 8889999998887654432
Q ss_pred CCCccEEEEE---cCccccCC-----CCCCccEEEEccccccCCh------hHHHHHHHHHHHccCCCEEEEEecCCchh
Q 002218 773 TDVKSAVLFD---GSITVFDS-----RLHGFDIGTCLEVIEHMEE------DEASQFGNIVLSSFRPRILIVSTPNYEYN 838 (952)
Q Consensus 773 ~~~~nVtf~q---GDa~dLpf-----~d~sFDVVVcieVIEHL~d------D~l~~L~eeI~RvLKPG~LIISTPN~efN 838 (952)
+. ..+|.. .+++++.. ..+..=+|-|...+||+.+ .++..|.. ..+-|+|.++++..++.+.|
T Consensus 173 -gv-~fef~~v~~~~~e~l~~~~l~~~~~E~laVn~~~~Lh~l~~~~~~~~~~~~~~L~-~ir~L~P~vvv~~E~ea~~n 249 (374)
T PF03514_consen 173 -GV-PFEFHPVVVESLEDLDPSMLRLRPGEALAVNCMFQLHHLLDESGALENPRDAFLR-VIRSLNPKVVVLVEQEADHN 249 (374)
T ss_pred -Cc-cEEEEecccCchhhCCHHHhCccCCcEEEEEeehhhhhhccccccccchHHHHHH-HHHhcCCCEEEEEeecCCCC
Confidence 21 234433 23333322 2233445557778899972 24566775 77789999888888876654
No 255
>PF00254 FKBP_C: FKBP-type peptidyl-prolyl cis-trans isomerase; InterPro: IPR001179 Synonym(s): Peptidylprolyl cis-trans isomerase FKBP-type peptidylprolyl isomerases (5.2.1.8 from EC) in vertebrates, are receptors for the two immunosuppressants, FK506 and rapamycin. The drugs inhibit T cell proliferation by arresting two distinct cytoplasmic signal transmission pathways. Peptidylprolyl isomerases accelerate protein folding by catalysing the cis-trans isomerisation of proline imidic peptide bonds in oligopeptides. These proteins are found in a variety of organisms.; GO: 0006457 protein folding; PDB: 1IX5_A 3JXV_A 3JYM_A 1T11_A 1PBK_A 1FD9_A 2VCD_A 3B7X_A 1Q6H_B 1Q6I_B ....
Probab=94.22 E-value=0.12 Score=46.77 Aligned_cols=91 Identities=29% Similarity=0.480 Sum_probs=64.0
Q ss_pred cCCCCceeEEEEEEEEeecccchhhhhccccceEEEeccCccchhhhhhhhhccccccceecccCCchhhhhhhccCccc
Q 002218 580 YPSNGCLSFISYSVSLVIEGETMKELLESREEFEFEMGTGAVIPQVEVVTAQMSVGQSACFCKELPPQELILAAADDSAR 659 (952)
Q Consensus 580 ~p~~gs~~~i~y~~~l~~~~~~~~~~~e~~~~~~fe~g~~a~~~~l~~v~~q~sv~q~~~~~~~l~~~~l~lAa~~~~~~ 659 (952)
.|..|+.|-|.|++.+. +|+....--..+..++|.+|.+.+.+-++..+..|.+|+.+.|. +||..-|=...... .
T Consensus 4 ~~~~gd~V~i~y~~~~~-~g~~~~~~~~~~~~~~~~~g~~~~i~g~e~al~~m~~Ge~~~~~--vp~~~ayg~~~~~~-~ 79 (94)
T PF00254_consen 4 TPKEGDTVTIHYTGRLE-DGKVFDSSYQEGEPFEFRLGSGQVIPGLEEALIGMKVGEKREFY--VPPELAYGEKGLEP-P 79 (94)
T ss_dssp SBSTTSEEEEEEEEEET-TSEEEEETTTTTSEEEEETTSSSSSHHHHHHHTTSBTTEEEEEE--EEGGGTTTTTTBCT-T
T ss_pred cCCCCCEEEEEEEEEEC-CCcEEEEeeecCcceeeeeccCccccchhhhcccccCCCEeeeE--eCChhhcCccccCC-C
Confidence 48999999999999996 55542222223578999999999999999999999999999988 55544333222111 1
Q ss_pred chhcccccccccceeeeec
Q 002218 660 TFSLLSSRACCLEYHITLL 678 (952)
Q Consensus 660 DiSlLs~d~~~LEyyI~LL 678 (952)
.++.+.. +.|.|.++
T Consensus 80 ---~ip~~~~-l~f~Iell 94 (94)
T PF00254_consen 80 ---KIPPNST-LVFEIELL 94 (94)
T ss_dssp ---TBTTTSE-EEEEEEEE
T ss_pred ---CcCCCCe-EEEEEEEC
Confidence 1444444 67766654
No 256
>PF05971 Methyltransf_10: Protein of unknown function (DUF890); InterPro: IPR010286 This family consists of several conserved hypothetical proteins from both eukaryotes and prokaryotes. The function of members of this family are unknown but are predicted to be SAM-dependent methyltransferases.; GO: 0008168 methyltransferase activity; PDB: 2H00_A.
Probab=94.06 E-value=0.27 Score=55.09 Aligned_cols=99 Identities=20% Similarity=0.187 Sum_probs=50.5
Q ss_pred hhHHHHHHHH---HHHhhcCC-----CCEEEEEcCccchHHHHH-h-cCCCCCceEEEEeCChHHHHHHHHHHhhhhhcc
Q 002218 696 PLSKQRVEYA---LQHIKESC-----ATTLVDFGCGSGSLLDSL-L-DYPTALEKIVGVDISQKSLSRAAKIIHSKLSKK 765 (952)
Q Consensus 696 PL~~QR~efV---ldlL~~~k-----~krVLDIGCGeG~ll~~L-A-r~g~~~~qVVGVDISeemLe~ArkrLsa~la~~ 765 (952)
|--+.|.+|+ .++|.... ..++||||||.-..--.| + .++ -+++|.||++..++.|++++....
T Consensus 77 P~iP~R~nYi~~i~DlL~~~~~~~~~~v~glDIGTGAscIYpLLg~~~~~---W~fvaTdID~~sl~~A~~nv~~N~--- 150 (299)
T PF05971_consen 77 PPIPNRLNYIHWIADLLASSNPGIPEKVRGLDIGTGASCIYPLLGAKLYG---WSFVATDIDPKSLESARENVERNP--- 150 (299)
T ss_dssp --HHHHHHHHHHHHHHHT--TCGCS---EEEEES-TTTTHHHHHHHHHH-----EEEEEES-HHHHHHHHHHHHHT----
T ss_pred CCCchhHHHHHHHHHHhhccccccccceEeecCCccHHHHHHHHhhhhcC---CeEEEecCCHHHHHHHHHHHHhcc---
Confidence 4445677775 45554332 358999999976432222 2 234 799999999999999999876420
Q ss_pred cccCCCCCCCccEEEEEcCccc-----cCCCCCCccEEEEccccccC
Q 002218 766 LDAAVPCTDVKSAVLFDGSITV-----FDSRLHGFDIGTCLEVIEHM 807 (952)
Q Consensus 766 ~~~l~Pr~~~~nVtf~qGDa~d-----Lpf~d~sFDVVVcieVIEHL 807 (952)
....+|++....-.. +......||+.+|.==++--
T Consensus 151 -------~L~~~I~l~~~~~~~~i~~~i~~~~e~~dftmCNPPFy~s 190 (299)
T PF05971_consen 151 -------NLESRIELRKQKNPDNIFDGIIQPNERFDFTMCNPPFYSS 190 (299)
T ss_dssp -------T-TTTEEEEE--ST-SSTTTSTT--S-EEEEEE-----SS
T ss_pred -------ccccceEEEEcCCccccchhhhcccceeeEEecCCccccC
Confidence 122367776543221 11123579999996544433
No 257
>COG1189 Predicted rRNA methylase [Translation, ribosomal structure and biogenesis]
Probab=94.04 E-value=0.33 Score=52.97 Aligned_cols=102 Identities=16% Similarity=0.241 Sum_probs=70.4
Q ss_pred CCCCEEEEEcCccchHHHHHhcCCCCCceEEEEeCChHHHHHHHHHHhhhhhcccccCCCCCCCccE-EEEEcCccccCC
Q 002218 712 SCATTLVDFGCGSGSLLDSLLDYPTALEKIVGVDISQKSLSRAAKIIHSKLSKKLDAAVPCTDVKSA-VLFDGSITVFDS 790 (952)
Q Consensus 712 ~k~krVLDIGCGeG~ll~~LAr~g~~~~qVVGVDISeemLe~ArkrLsa~la~~~~~l~Pr~~~~nV-tf~qGDa~dLpf 790 (952)
.+++.+||+|..+|.|+..+.++|. .+|+|||.....+.+--+ .. ++| .+...|+..+..
T Consensus 78 ~k~kv~LDiGsSTGGFTd~lLq~gA--k~VyavDVG~~Ql~~kLR----------------~d-~rV~~~E~tN~r~l~~ 138 (245)
T COG1189 78 VKGKVVLDIGSSTGGFTDVLLQRGA--KHVYAVDVGYGQLHWKLR----------------ND-PRVIVLERTNVRYLTP 138 (245)
T ss_pred CCCCEEEEecCCCccHHHHHHHcCC--cEEEEEEccCCccCHhHh----------------cC-CcEEEEecCChhhCCH
Confidence 4788999999999999999999985 899999998877766422 12 244 344456666543
Q ss_pred C--CCCccEEEEccccccCChhHHHHHHHHHHHccCCC--EEEEEecCCch
Q 002218 791 R--LHGFDIGTCLEVIEHMEEDEASQFGNIVLSSFRPR--ILIVSTPNYEY 837 (952)
Q Consensus 791 ~--d~sFDVVVcieVIEHL~dD~l~~L~eeI~RvLKPG--~LIISTPN~ef 837 (952)
. .+..|+++|--.+.-+. .+...+..+++|+ .+.+.-|-++.
T Consensus 139 ~~~~~~~d~~v~DvSFISL~-----~iLp~l~~l~~~~~~~v~LvKPQFEa 184 (245)
T COG1189 139 EDFTEKPDLIVIDVSFISLK-----LILPALLLLLKDGGDLVLLVKPQFEA 184 (245)
T ss_pred HHcccCCCeEEEEeehhhHH-----HHHHHHHHhcCCCceEEEEecchhhh
Confidence 2 23678998855543332 3344689999998 55555665443
No 258
>PRK10742 putative methyltransferase; Provisional
Probab=93.87 E-value=0.37 Score=52.83 Aligned_cols=108 Identities=8% Similarity=-0.051 Sum_probs=74.6
Q ss_pred hhhhcCCchhHHHHH------HHHHHHhhcCCCC--EEEEEcCccchHHHHHhcCCCCCceEEEEeCChHHHHHHHHHHh
Q 002218 688 MEQALFSPPLSKQRV------EYALQHIKESCAT--TLVDFGCGSGSLLDSLLDYPTALEKIVGVDISQKSLSRAAKIIH 759 (952)
Q Consensus 688 ye~~~F~PPL~~QR~------efVldlL~~~k~k--rVLDIGCGeG~ll~~LAr~g~~~~qVVGVDISeemLe~ArkrLs 759 (952)
....+|.|.+...|. +.+.+.+...++. +|||+=+|.|..+..++..| ++|++||-++......++.+.
T Consensus 55 v~vDF~~~~~a~rR~~~~g~~~~l~kAvglk~g~~p~VLD~TAGlG~Da~~las~G---~~V~~vEr~p~vaalL~dgL~ 131 (250)
T PRK10742 55 IFVDFVGGAMAHRRKFGGGRGEAVAKAVGIKGDYLPDVVDATAGLGRDAFVLASVG---CRVRMLERNPVVAALLDDGLA 131 (250)
T ss_pred eEEEccCchHHHHHHhcCCCccHHHHHhCCCCCCCCEEEECCCCccHHHHHHHHcC---CEEEEEECCHHHHHHHHHHHH
Confidence 444566666665554 5677777666665 89999999999999999998 779999999988777776654
Q ss_pred hhhhcccccCCCCCC---CccEEEEEcCccccCC-CCCCccEEEEcccc
Q 002218 760 SKLSKKLDAAVPCTD---VKSAVLFDGSITVFDS-RLHGFDIGTCLEVI 804 (952)
Q Consensus 760 a~la~~~~~l~Pr~~---~~nVtf~qGDa~dLpf-~d~sFDVVVcieVI 804 (952)
..... +... ..+++++++|..++-. ....||+|+.==.+
T Consensus 132 ra~~~------~~~~~~~~~ri~l~~~da~~~L~~~~~~fDVVYlDPMf 174 (250)
T PRK10742 132 RGYAD------AEIGGWLQERLQLIHASSLTALTDITPRPQVVYLDPMF 174 (250)
T ss_pred Hhhhc------cccchhhhceEEEEeCcHHHHHhhCCCCCcEEEECCCC
Confidence 31110 0111 1468999999876432 22369999873333
No 259
>KOG2730 consensus Methylase [General function prediction only]
Probab=93.70 E-value=0.064 Score=57.85 Aligned_cols=74 Identities=15% Similarity=0.102 Sum_probs=56.8
Q ss_pred CCCEEEEEcCccchHHHHHhcCCCCCceEEEEeCChHHHHHHHHHHhhhhhcccccCCCCCCCccEEEEEcCccccC---
Q 002218 713 CATTLVDFGCGSGSLLDSLLDYPTALEKIVGVDISQKSLSRAAKIIHSKLSKKLDAAVPCTDVKSAVLFDGSITVFD--- 789 (952)
Q Consensus 713 k~krVLDIGCGeG~ll~~LAr~g~~~~qVVGVDISeemLe~ArkrLsa~la~~~~~l~Pr~~~~nVtf~qGDa~dLp--- 789 (952)
....|+|.-||-|..+..++..+ ..|++|||++.-|..|+++++- | +-+.+|+|++||+.++-
T Consensus 94 ~~~~iidaf~g~gGntiqfa~~~---~~VisIdiDPikIa~AkhNaei-------Y----GI~~rItFI~GD~ld~~~~l 159 (263)
T KOG2730|consen 94 NAEVIVDAFCGVGGNTIQFALQG---PYVIAIDIDPVKIACARHNAEV-------Y----GVPDRITFICGDFLDLASKL 159 (263)
T ss_pred CcchhhhhhhcCCchHHHHHHhC---CeEEEEeccHHHHHHHhcccee-------e----cCCceeEEEechHHHHHHHH
Confidence 56789999999999999999888 7899999999999999887642 2 23348999999997642
Q ss_pred -CCCCCccEEEE
Q 002218 790 -SRLHGFDIGTC 800 (952)
Q Consensus 790 -f~d~sFDVVVc 800 (952)
+....+|+|..
T Consensus 160 q~~K~~~~~vf~ 171 (263)
T KOG2730|consen 160 KADKIKYDCVFL 171 (263)
T ss_pred hhhhheeeeeec
Confidence 22223556654
No 260
>PF01269 Fibrillarin: Fibrillarin; InterPro: IPR000692 Fibrillarin is a component of a nucleolar small nuclear ribonucleoprotein (SnRNP), functioning in vivo in ribosomal RNA processing [, ]. It is associated with U3, U8 and U13 small nuclear RNAs in mammals [] and is similar to the yeast NOP1 protein []. Fibrillarin has a well conserved sequence of around 320 amino acids, and contains 3 domains, an N-terminal Gly/Arg-rich region; a central domain resembling other RNA-binding proteins and containing an RNP-2-like consensus sequence; and a C-terminal alpha-helical domain. An evolutionarily related pre-rRNA processing protein, which lacks the Gly/Arg-rich domain, has been found in various archaebacteria.; GO: 0003723 RNA binding, 0008168 methyltransferase activity, 0006364 rRNA processing, 0008033 tRNA processing; PDB: 3PLA_E 3ID6_C 3ID5_B 1NT2_A 3NVK_J 2NNW_B 3NVM_B 3NMU_J 1PRY_A 1G8A_A ....
Probab=93.64 E-value=0.35 Score=52.29 Aligned_cols=100 Identities=17% Similarity=0.110 Sum_probs=69.6
Q ss_pred cCCCCEEEEEcCccchHHHHHhcCCCCCceEEEEeCChHH----HHHHHHHHhhhhhcccccCCCCCCCccEEEEEcCcc
Q 002218 711 ESCATTLVDFGCGSGSLLDSLLDYPTALEKIVGVDISQKS----LSRAAKIIHSKLSKKLDAAVPCTDVKSAVLFDGSIT 786 (952)
Q Consensus 711 ~~k~krVLDIGCGeG~ll~~LAr~g~~~~qVVGVDISeem----Le~ArkrLsa~la~~~~~l~Pr~~~~nVtf~qGDa~ 786 (952)
..++.+||-+|.++|.....++.-.++...|++|+.|+.. +..|++| .||--+-+|+.
T Consensus 71 ik~gskVLYLGAasGTTVSHvSDIvg~~G~VYaVEfs~r~~rdL~~la~~R------------------~NIiPIl~DAr 132 (229)
T PF01269_consen 71 IKPGSKVLYLGAASGTTVSHVSDIVGPDGVVYAVEFSPRSMRDLLNLAKKR------------------PNIIPILEDAR 132 (229)
T ss_dssp --TT-EEEEETTTTSHHHHHHHHHHTTTSEEEEEESSHHHHHHHHHHHHHS------------------TTEEEEES-TT
T ss_pred CCCCCEEEEecccCCCccchhhhccCCCCcEEEEEecchhHHHHHHHhccC------------------CceeeeeccCC
Confidence 3467899999999999999988765445799999999954 4444432 37777888887
Q ss_pred ccC---CCCCCccEEEEccccccCChhHHHHHHHHHHHccCCC-EEEEEe
Q 002218 787 VFD---SRLHGFDIGTCLEVIEHMEEDEASQFGNIVLSSFRPR-ILIVST 832 (952)
Q Consensus 787 dLp---f~d~sFDVVVcieVIEHL~dD~l~~L~eeI~RvLKPG-~LIIST 832 (952)
... .--..+|+|++--. .+++.+.+..++..+||+| .++++.
T Consensus 133 ~P~~Y~~lv~~VDvI~~DVa----Qp~Qa~I~~~Na~~fLk~gG~~~i~i 178 (229)
T PF01269_consen 133 HPEKYRMLVEMVDVIFQDVA----QPDQARIAALNARHFLKPGGHLIISI 178 (229)
T ss_dssp SGGGGTTTS--EEEEEEE-S----STTHHHHHHHHHHHHEEEEEEEEEEE
T ss_pred ChHHhhcccccccEEEecCC----ChHHHHHHHHHHHhhccCCcEEEEEE
Confidence 532 22357999987422 3478888888899999998 666654
No 261
>KOG4058 consensus Uncharacterized conserved protein [Function unknown]
Probab=93.52 E-value=0.14 Score=52.38 Aligned_cols=94 Identities=20% Similarity=0.202 Sum_probs=67.1
Q ss_pred chhHHHHHHHHHHHhhcCCCCEEEEEcCccchHHHHHhcCCCCCceEEEEeCChHHHHHHHHHHhhhhhcccccCCCCCC
Q 002218 695 PPLSKQRVEYALQHIKESCATTLVDFGCGSGSLLDSLLDYPTALEKIVGVDISQKSLSRAAKIIHSKLSKKLDAAVPCTD 774 (952)
Q Consensus 695 PPL~~QR~efVldlL~~~k~krVLDIGCGeG~ll~~LAr~g~~~~qVVGVDISeemLe~ArkrLsa~la~~~~~l~Pr~~ 774 (952)
.|.....++-++.++...+..+.+|+|.|.|+.....++.+ ....+|+++++-.+..++ +++...+ -
T Consensus 54 VpAtteQv~nVLSll~~n~~GklvDlGSGDGRiVlaaar~g--~~~a~GvELNpwLVaysr--l~a~R~g---------~ 120 (199)
T KOG4058|consen 54 VPATTEQVENVLSLLRGNPKGKLVDLGSGDGRIVLAAARCG--LRPAVGVELNPWLVAYSR--LHAWRAG---------C 120 (199)
T ss_pred cCccHHHHHHHHHHccCCCCCcEEeccCCCceeehhhhhhC--CCcCCceeccHHHHHHHH--HHHHHHh---------c
Confidence 45555666777888888788899999999999999888887 367899999999998884 3332211 1
Q ss_pred CccEEEEEcCccccCCCCCCccEEEEc
Q 002218 775 VKSAVLFDGSITVFDSRLHGFDIGTCL 801 (952)
Q Consensus 775 ~~nVtf~qGDa~dLpf~d~sFDVVVci 801 (952)
.....|..-|+...+..+..+-+|+..
T Consensus 121 ~k~trf~RkdlwK~dl~dy~~vviFga 147 (199)
T KOG4058|consen 121 AKSTRFRRKDLWKVDLRDYRNVVIFGA 147 (199)
T ss_pred ccchhhhhhhhhhccccccceEEEeeh
Confidence 235677777776666555555455443
No 262
>KOG3115 consensus Methyltransferase-like protein [General function prediction only]
Probab=93.20 E-value=0.35 Score=51.89 Aligned_cols=69 Identities=19% Similarity=0.214 Sum_probs=52.2
Q ss_pred CCCEEEEEcCccchHHHHHhcCCCCCceEEEEeCChHHHHHHHHHHhhhhhcccccCCCCCCCccEEEEEcCccc
Q 002218 713 CATTLVDFGCGSGSLLDSLLDYPTALEKIVGVDISQKSLSRAAKIIHSKLSKKLDAAVPCTDVKSAVLFDGSITV 787 (952)
Q Consensus 713 k~krVLDIGCGeG~ll~~LAr~g~~~~qVVGVDISeemLe~ArkrLsa~la~~~~~l~Pr~~~~nVtf~qGDa~d 787 (952)
+.-.+.|||||-|.++..|+... |..-|.|++|-...-++.++++.+.... ...+...++.+...++..
T Consensus 60 ~kvefaDIGCGyGGLlv~Lsp~f-PdtLiLGmEIR~KVsdYVk~RI~ALR~~-----~a~~~~~ni~vlr~namk 128 (249)
T KOG3115|consen 60 KKVEFADIGCGYGGLLMKLAPKF-PDTLILGMEIRDKVSDYVKERIQALRRT-----SAEGQYPNISVLRTNAMK 128 (249)
T ss_pred ccceEEeeccCccchhhhccccC-ccceeeeehhhHHHHHHHHHHHHHHhcc-----ccccccccceeeeccchh
Confidence 34579999999999999999987 6788999999999999998888764321 112345667777666544
No 263
>COG4301 Uncharacterized conserved protein [Function unknown]
Probab=93.04 E-value=0.86 Score=50.25 Aligned_cols=132 Identities=20% Similarity=0.220 Sum_probs=85.1
Q ss_pred hhhhcCCchhHHHHHHH------HHHHhhcCCCCEEEEEcCccchHHHHHh----cCCCCCceEEEEeCChHHHHHHHHH
Q 002218 688 MEQALFSPPLSKQRVEY------ALQHIKESCATTLVDFGCGSGSLLDSLL----DYPTALEKIVGVDISQKSLSRAAKI 757 (952)
Q Consensus 688 ye~~~F~PPL~~QR~ef------VldlL~~~k~krVLDIGCGeG~ll~~LA----r~g~~~~qVVGVDISeemLe~Arkr 757 (952)
++...--|..|+.|-+. ..++.....+.+++|+|.|+..-++.|. ..+ ...+.+.||+|+..|+...+.
T Consensus 47 Fe~I~~LPEYYpTRtEaaIl~~~a~Eia~~~g~~~lveLGsGns~Ktr~Llda~~~~~-~~~ryvpiDv~a~iL~~ta~a 125 (321)
T COG4301 47 FEQITRLPEYYPTRTEAAILQARAAEIASITGACTLVELGSGNSTKTRILLDALAHRG-SLLRYVPIDVSASILRATATA 125 (321)
T ss_pred HHHHhccccccCchhHHHHHHHHHHHHHHhhCcceEEEecCCccHHHHHHHHHhhhcC-CcceeeeecccHHHHHHHHHH
Confidence 44444444555444443 2233344568899999999887666554 433 347899999999999876554
Q ss_pred HhhhhhcccccCCCCCCCccEEEEEcCccc----cCCCCCCccE-EEEccccccCChhHHHHHHHHHHHccCCC-EEEEE
Q 002218 758 IHSKLSKKLDAAVPCTDVKSAVLFDGSITV----FDSRLHGFDI-GTCLEVIEHMEEDEASQFGNIVLSSFRPR-ILIVS 831 (952)
Q Consensus 758 Lsa~la~~~~~l~Pr~~~~nVtf~qGDa~d----Lpf~d~sFDV-VVcieVIEHL~dD~l~~L~eeI~RvLKPG-~LIIS 831 (952)
+.... -...|.-+.||.+. ++ ..+--+ ++....|-.+.+++...|...+...++|| .+++.
T Consensus 126 i~~~y-----------~~l~v~~l~~~~~~~La~~~--~~~~Rl~~flGStlGN~tp~e~~~Fl~~l~~a~~pGd~~LlG 192 (321)
T COG4301 126 ILREY-----------PGLEVNALCGDYELALAELP--RGGRRLFVFLGSTLGNLTPGECAVFLTQLRGALRPGDYFLLG 192 (321)
T ss_pred HHHhC-----------CCCeEeehhhhHHHHHhccc--CCCeEEEEEecccccCCChHHHHHHHHHHHhcCCCcceEEEe
Confidence 43211 11256666676643 22 222223 33345788999899999999999999999 77776
Q ss_pred ec
Q 002218 832 TP 833 (952)
Q Consensus 832 TP 833 (952)
+-
T Consensus 193 vD 194 (321)
T COG4301 193 VD 194 (321)
T ss_pred cc
Confidence 54
No 264
>PRK00102 rnc ribonuclease III; Reviewed
Probab=93.03 E-value=0.2 Score=52.84 Aligned_cols=68 Identities=22% Similarity=0.246 Sum_probs=46.1
Q ss_pred CCCChHhHHHH---hcc-CceeEEEeeeeccccCCCCccccCCCCCceEEEeeecCCceeeeccccccchHHHHHHHHHH
Q 002218 14 MKLTPKAIIVQ---KFG-RNAQFTVDEVQDVVQNGCPGLAIPQKGPCLYRCSLQLPEFSVVSETFKKKKDAEQSAAEKAL 89 (952)
Q Consensus 14 ~~~tpka~~~q---~~g-~~~~y~~~ev~~~~~~~~~~~~~~q~~~~~~~c~l~lp~~~v~~~~~~~kkdaeq~aa~~al 89 (952)
....||..+++ +-| ..-.|++.+... |...| .|.|.+-+-+-.+-+|.-+-||+|||.||+.||
T Consensus 156 ~~~~pk~~L~e~~~~~~~~~p~y~~~~~~g-----------~~~~~-~f~~~v~i~~~~~~~g~g~skk~Ae~~AA~~Al 223 (229)
T PRK00102 156 LVKDYKTRLQELLQGRGLPLPEYELVKEEG-----------PAHDK-EFTVEVTVNGKELGEGTGSSKKEAEQAAAKQAL 223 (229)
T ss_pred ccCCHHHHHHHHHHHcCCCCCceEEeeccC-----------CCCCc-eEEEEEEECCEEEEEeeeCCHHHHHHHHHHHHH
Confidence 44567766554 333 335676653221 22223 688888887756666999999999999999999
Q ss_pred HHcC
Q 002218 90 EKLG 93 (952)
Q Consensus 90 ~klg 93 (952)
++|.
T Consensus 224 ~~l~ 227 (229)
T PRK00102 224 KKLK 227 (229)
T ss_pred HHHh
Confidence 9985
No 265
>PF14709 DND1_DSRM: double strand RNA binding domain from DEAD END PROTEIN 1
Probab=92.61 E-value=0.13 Score=47.02 Aligned_cols=40 Identities=30% Similarity=0.449 Sum_probs=34.3
Q ss_pred CCceEEEeeecCCcee----------eeccccccchHHHHHHHHHHHHcC
Q 002218 54 GPCLYRCSLQLPEFSV----------VSETFKKKKDAEQSAAEKALEKLG 93 (952)
Q Consensus 54 ~~~~~~c~l~lp~~~v----------~~~~~~~kkdaeq~aa~~al~klg 93 (952)
|..+|-|++.+|.... -+.....||||+.+||+.||..||
T Consensus 31 ~~~~F~ykV~i~~~~~~~~~~~~~~~p~~~~~~~k~Ak~~AA~~~L~~Lg 80 (80)
T PF14709_consen 31 HRKLFLYKVVIPGLEYPFEGSIECFGPTKPSSTKKEAKESAAQQALQALG 80 (80)
T ss_pred ccEEEEEEEEEcCCCCCCcceEEEccCCCcCccHHHHHHHHHHHHHHhcC
Confidence 5569999999998754 237788999999999999999998
No 266
>TIGR02191 RNaseIII ribonuclease III, bacterial. This family consists of bacterial examples of ribonuclease III. This enzyme cleaves double-stranded rRNA. It is involved in processing ribosomal RNA precursors. It is found even in minimal genones such as Mycoplasma genitalium and Buchnera aphidicola, and in some cases has been shown to be an essential gene. These bacterial proteins contain a double-stranded RNA binding motif (pfam00035) and a ribonuclease III domain (pfam00636). Eukaryotic homologs tend to be much longer proteins with additional domains, localized to the nucleus, and not included in this family.
Probab=92.33 E-value=0.27 Score=51.35 Aligned_cols=67 Identities=27% Similarity=0.275 Sum_probs=47.1
Q ss_pred CCCChHhHHH---Hhcc-CceeEEEeeeeccccCCCCccccCCCCCceEEEeeecCCceeeeccccccchHHHHHHHHHH
Q 002218 14 MKLTPKAIIV---QKFG-RNAQFTVDEVQDVVQNGCPGLAIPQKGPCLYRCSLQLPEFSVVSETFKKKKDAEQSAAEKAL 89 (952)
Q Consensus 14 ~~~tpka~~~---q~~g-~~~~y~~~ev~~~~~~~~~~~~~~q~~~~~~~c~l~lp~~~v~~~~~~~kkdaeq~aa~~al 89 (952)
+..-||..++ |+.| ..-.|++.++. | |...| .|.|.+.+-+-.+.+|.-+.||+|||.||+.||
T Consensus 150 ~~~~pk~~L~e~~~~~~~~~p~y~~~~~~--------g---~~~~~-~f~~~v~~~~~~~~~g~g~skk~A~~~AA~~Al 217 (220)
T TIGR02191 150 TLKDYKTALQEWAQARGKPLPEYRLIKEE--------G---PDHDK-EFTVEVSVNGEPYGEGKGKSKKEAEQNAAKAAL 217 (220)
T ss_pred ccCChHHHHHHHHHHcCCCCceEEEeccc--------C---CCCCc-eEEEEEEECCEEEEEeeeCCHHHHHHHHHHHHH
Confidence 4556776654 3333 34677665332 1 12233 899999998766777889999999999999999
Q ss_pred HHc
Q 002218 90 EKL 92 (952)
Q Consensus 90 ~kl 92 (952)
++|
T Consensus 218 ~~l 220 (220)
T TIGR02191 218 EKL 220 (220)
T ss_pred HhC
Confidence 986
No 267
>PF04989 CmcI: Cephalosporin hydroxylase; InterPro: IPR007072 This entry contains Rhamnosyl O-methyltransferase which catalyses the O-methylation of the hydroxyl group located on C-2 of the first rhamnosyl residue linked to the phenolic group of glycosylated phenolphthiocerol dimycocerosates (PGL) and p-hydroxybenzoic acid derivatives (p-HBAD) []. Members of this family are about 220 amino acids long. It also includes the CmcI protein O85726 from SWISSPROT, which is presumed to represent the cephalosporin-7--hydroxylase []. However this has not been experimentally verified.; GO: 0008168 methyltransferase activity, 0008610 lipid biosynthetic process; PDB: 2BR4_B 2BR3_E 2BR5_E 2BM8_J 2BM9_E.
Probab=92.30 E-value=0.38 Score=51.42 Aligned_cols=114 Identities=18% Similarity=0.132 Sum_probs=56.9
Q ss_pred HHhhcCCCCEEEEEcCccchHHHHHhc---CCCCCceEEEEeCChHHHHHHHHHHhhhhhcccccCCCCCCCccEEEEEc
Q 002218 707 QHIKESCATTLVDFGCGSGSLLDSLLD---YPTALEKIVGVDISQKSLSRAAKIIHSKLSKKLDAAVPCTDVKSAVLFDG 783 (952)
Q Consensus 707 dlL~~~k~krVLDIGCGeG~ll~~LAr---~g~~~~qVVGVDISeemLe~ArkrLsa~la~~~~~l~Pr~~~~nVtf~qG 783 (952)
+++-..++..|+++|--.|.-+..+|. ..+...+|+||||+-......+...+ ...++|++++|
T Consensus 26 eli~~~kPd~IIE~Gi~~GGSli~~A~ml~~~~~~~~VigiDIdir~~~~~a~e~h-------------p~~~rI~~i~G 92 (206)
T PF04989_consen 26 ELIWELKPDLIIETGIAHGGSLIFWASMLELLGGKGKVIGIDIDIRPHNRKAIESH-------------PMSPRITFIQG 92 (206)
T ss_dssp HHHHHH--SEEEEE--TTSHHHHHHHHHHHHTT---EEEEEES-GTT--S-GGGG-----------------TTEEEEES
T ss_pred HHHHHhCCCeEEEEecCCCchHHHHHHHHHHhCCCceEEEEeCCcchhchHHHhhc-------------cccCceEEEEC
Confidence 344455789999999988877655542 11134799999997655544322111 12358999999
Q ss_pred CccccCC----C--CCCccEEEEccccccCChhHHHHHHHHHHHccCCC-EEEEEecC
Q 002218 784 SITVFDS----R--LHGFDIGTCLEVIEHMEEDEASQFGNIVLSSFRPR-ILIVSTPN 834 (952)
Q Consensus 784 Da~dLpf----~--d~sFDVVVcieVIEHL~dD~l~~L~eeI~RvLKPG-~LIISTPN 834 (952)
|..+... . ....+-++.+.=-+|..+.....|. ..+.++++| .+||..-+
T Consensus 93 ds~d~~~~~~v~~~~~~~~~vlVilDs~H~~~hvl~eL~-~y~plv~~G~Y~IVeDt~ 149 (206)
T PF04989_consen 93 DSIDPEIVDQVRELASPPHPVLVILDSSHTHEHVLAELE-AYAPLVSPGSYLIVEDTI 149 (206)
T ss_dssp -SSSTHHHHTSGSS----SSEEEEESS----SSHHHHHH-HHHHT--TT-EEEETSHH
T ss_pred CCCCHHHHHHHHHhhccCCceEEEECCCccHHHHHHHHH-HhCccCCCCCEEEEEecc
Confidence 9876432 1 1123333333333566657777776 499999999 77775444
No 268
>cd00048 DSRM Double-stranded RNA binding motif. Binding is not sequence specific but is highly specific for double stranded RNA. Found in a variety of proteins including dsRNA dependent protein kinase PKR, RNA helicases, Drosophila staufen protein, E. coli RNase III, RNases H1, and dsRNA dependent adenosine deaminases.
Probab=92.23 E-value=0.18 Score=42.17 Aligned_cols=67 Identities=16% Similarity=0.191 Sum_probs=48.4
Q ss_pred hhhHHHhhhhhcccCcceeccccCCccccccchhhhhhhhhcccccccccccCCCcccCCCceeEEEEEeeccCCccccc
Q 002218 395 PREMLFMFCRQHWLSEPVFSTCSNSLKESSESSRFYEKSAALESAETGKECTSGGGTAASDNVRCEVKIFSKSRDPILEC 474 (952)
Q Consensus 395 pr~~l~~fc~~~~l~ep~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~c~v~~~s~~~~~~~~~ 474 (952)
|+..|-.+|..++...|.|... . ..|. .....|.|+|.|.. .+
T Consensus 2 p~~~L~e~~~~~~~~~~~y~~~--~--------------------------~~g~--~~~~~f~~~v~i~~-------~~ 44 (68)
T cd00048 2 PKSLLQELAQKRGKPLPEYELV--E--------------------------EEGP--DHAPRFTVEVTVGG-------KI 44 (68)
T ss_pred hHHHHHHHHHHcCCCCCeEEEe--e--------------------------eeCC--CCCCeEEEEEEECC-------EE
Confidence 7889999999998999999876 1 0111 11245999999944 23
Q ss_pred CchhhhhhhhhhHhhhhhHHHHHH
Q 002218 475 SPKEFYKKQNESIENASLKVLSWL 498 (952)
Q Consensus 475 ~~~~~~~~~~dai~~a~l~~l~~~ 498 (952)
.....-++..+|-|+||.++|..|
T Consensus 45 ~~~g~g~sKk~Ak~~AA~~al~~L 68 (68)
T cd00048 45 TGEGEGSSKKEAKQNAAEAALRKL 68 (68)
T ss_pred EEEeecCCHHHHHHHHHHHHHHhC
Confidence 334455678899999999999653
No 269
>PF13578 Methyltransf_24: Methyltransferase domain; PDB: 3SSO_A 3SSN_C 3SSM_D.
Probab=92.18 E-value=0.082 Score=48.80 Aligned_cols=98 Identities=19% Similarity=0.089 Sum_probs=36.8
Q ss_pred EEEcCccchHHHHHhcCCCCC--ceEEEEeCChHHHHHHHHHHhhhhhcccccCCCCCCCccEEEEEcCccccC--CCCC
Q 002218 718 VDFGCGSGSLLDSLLDYPTAL--EKIVGVDISQKSLSRAAKIIHSKLSKKLDAAVPCTDVKSAVLFDGSITVFD--SRLH 793 (952)
Q Consensus 718 LDIGCGeG~ll~~LAr~g~~~--~qVVGVDISeemLe~ArkrLsa~la~~~~~l~Pr~~~~nVtf~qGDa~dLp--f~d~ 793 (952)
||||+..|..+..+++..... .++++||..+. .+.+++.+.. .....++++++++..+.- +...
T Consensus 1 lEiG~~~G~st~~l~~~~~~~~~~~~~~vD~~~~-~~~~~~~~~~-----------~~~~~~~~~~~g~s~~~l~~~~~~ 68 (106)
T PF13578_consen 1 LEIGTYSGYSTLWLASALRDNGRGKLYSVDPFPG-DEQAQEIIKK-----------AGLSDRVEFIQGDSPDFLPSLPDG 68 (106)
T ss_dssp --------------------------EEEESS------------------------GGG-BTEEEEES-THHHHHHHHH-
T ss_pred CccccccccccccccccccccccCCEEEEECCCc-ccccchhhhh-----------cCCCCeEEEEEcCcHHHHHHcCCC
Confidence 689999999988877643222 37999999985 2222222211 012247999999986532 1246
Q ss_pred CccEEEEccccccCChhHHHHHHHHHHHccCCCEEEE
Q 002218 794 GFDIGTCLEVIEHMEEDEASQFGNIVLSSFRPRILIV 830 (952)
Q Consensus 794 sFDVVVcieVIEHL~dD~l~~L~eeI~RvLKPG~LII 830 (952)
.||+|+.=. .|-.+.....+ +.+.+.|+||.+|+
T Consensus 69 ~~dli~iDg--~H~~~~~~~dl-~~~~~~l~~ggviv 102 (106)
T PF13578_consen 69 PIDLIFIDG--DHSYEAVLRDL-ENALPRLAPGGVIV 102 (106)
T ss_dssp -EEEEEEES-----HHHHHHHH-HHHGGGEEEEEEEE
T ss_pred CEEEEEECC--CCCHHHHHHHH-HHHHHHcCCCeEEE
Confidence 899997643 35444454555 46889999994433
No 270
>cd08031 LARP_4_5_like La RNA-binding domain of proteins similar to La-related proteins 4 and 5. This domain is found in proteins similar to La-related proteins 4 and 5 (LARP4, LARP5). A variety of La-related proteins (LARPs or La ribonucleoproteins), with differing domain architecture, appear to function as RNA-binding proteins in eukaryotic cellular processes.
Probab=91.93 E-value=0.086 Score=47.92 Aligned_cols=73 Identities=23% Similarity=0.248 Sum_probs=57.3
Q ss_pred HHHHHHHhhhhcccccccCCCchhhhHHhhhhcCcccccccceEEEeecccccccccccCcccccchHHHHHHHHHHhhc
Q 002218 108 DKLIASVKHLFSNEFLSSQSPLRGHFIAALRRDGDLYGSVPASVIAVCDSKLANLCKLINPKVESSHLLVLTYIMRAATR 187 (952)
Q Consensus 108 ~~l~~~~~~~f~~e~~~~~~pl~~h~~~~~~r~g~~~g~~p~~~~~~~d~k~~~~ck~~~~~~e~~p~~~~~~~~~a~~~ 187 (952)
+.|+..|.|-|||+=|..++=|..|+. .| |-||+++||.+- |+-+++. | ..+|..|.+.
T Consensus 2 ~~i~~QvEfYFSd~NL~~D~fL~~~m~------~d--G~Vpl~~i~~F~-rmk~lt~--d----------~~~i~~Al~~ 60 (75)
T cd08031 2 ELLKRQLEYYFSRENLANDAYLLSQMD------SD--QYVPIWTIANFN-KIKKLTT--D----------IDLIVEALRE 60 (75)
T ss_pred hHHHHHHHHHcCHhhhccCHHHHHHhC------CC--CCEEHHHHhCch-hHHHHcC--C----------HHHHHHHHHh
Confidence 578999999999999999988888763 23 899999999883 5555552 1 4788888887
Q ss_pred cCCcEEeecCceeee
Q 002218 188 LSEFVVTSEGQLSIW 202 (952)
Q Consensus 188 ~~~~~~~s~~~~~~~ 202 (952)
++ .|.+++++-.|+
T Consensus 61 S~-~lev~ed~~~VR 74 (75)
T cd08031 61 SP-NVQVDEKGEKVR 74 (75)
T ss_pred CC-eEEEcCCCCccC
Confidence 66 588998877664
No 271
>KOG0544 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=91.78 E-value=0.36 Score=46.05 Aligned_cols=70 Identities=27% Similarity=0.402 Sum_probs=54.0
Q ss_pred ccCCCCCCccCCCCceeEEEEEEEEeecccchhhhhccccceEEEeccCccchhhhhhhhhccccccceec
Q 002218 571 SIGGPDSGIYPSNGCLSFISYSVSLVIEGETMKELLESREEFEFEMGTGAVIPQVEVVTAQMSVGQSACFC 641 (952)
Q Consensus 571 ~~~~~~~~~~p~~gs~~~i~y~~~l~~~~~~~~~~~e~~~~~~fe~g~~a~~~~l~~v~~q~sv~q~~~~~ 641 (952)
-|.--|--.||-+|-.+-+-|+--|..- +--.--...+.-|.|.||.|.|+---+.-+.||||||.++--
T Consensus 7 ~i~~Gdg~tfpK~Gqtvt~hYtg~L~dG-~kfDSs~dr~kPfkf~IGkgeVIkGwdegv~qmsvGekakLt 76 (108)
T KOG0544|consen 7 VISPGDGRTFPKKGQTVTVHYTGTLQDG-KKFDSSRDRGKPFKFKIGKGEVIKGWDEGVAQMSVGEKAKLT 76 (108)
T ss_pred EeeCCCCcccCCCCCEEEEEEEeEecCC-cEeecccccCCCeeEEecCcceeechhhcchhccccccceee
Confidence 3433344489999999999999988653 322223334578999999999999999999999999997654
No 272
>cd08030 LA_like_plant La-motif domain of plant proteins similar to the La autoantigen. This domain is found in plant proteins related to the La autoantigen. A variety of La-related proteins (LARPs or La ribonucleoproteins), with differing domain architecture, appear to function as RNA-binding proteins in eukaryotic cellular processes.
Probab=91.71 E-value=0.11 Score=48.91 Aligned_cols=86 Identities=22% Similarity=0.235 Sum_probs=64.1
Q ss_pred HHHHHHHhhhhcccccccCCCchhhhHHhhhhcCcccccccceEEEeeccccccccccc--CcccccchHHHHHHHHHHh
Q 002218 108 DKLIASVKHLFSNEFLSSQSPLRGHFIAALRRDGDLYGSVPASVIAVCDSKLANLCKLI--NPKVESSHLLVLTYIMRAA 185 (952)
Q Consensus 108 ~~l~~~~~~~f~~e~~~~~~pl~~h~~~~~~r~g~~~g~~p~~~~~~~d~k~~~~ck~~--~~~~e~~p~~~~~~~~~a~ 185 (952)
+.++..|.|-|||+=|.-+.=|..|+. .|--|-||+++|+.+- |+-++++.- +| +..|-=-+..|..|.
T Consensus 3 ~~i~~QvEfYFSd~NL~~D~fL~~~~~------~~~dG~V~i~~i~~F~-rmk~l~~~~~~~~--~~~~~~~~~~I~~AL 73 (90)
T cd08030 3 EKVLRQVEFYFSDSNLPRDDFLLEEVE------EDPDGMVSLALICSFS-RMRSLLGLGGGKP--EDVPEDTLKAVAEAL 73 (90)
T ss_pred HHHHHHHHcccchhhcccCHHHHHHhc------cCCCCCEehHHHhcCh-HHHHHhhcccccc--cccchhHHHHHHHHH
Confidence 578999999999998888876666654 4556999999999984 666666432 22 222332367888888
Q ss_pred hccCCcEEeecCceeeee
Q 002218 186 TRLSEFVVTSEGQLSIWR 203 (952)
Q Consensus 186 ~~~~~~~~~s~~~~~~~~ 203 (952)
+.++ .|.+|+++.+|+|
T Consensus 74 k~S~-~levseD~~~VRR 90 (90)
T cd08030 74 RTST-LLKVSEDGKRVGR 90 (90)
T ss_pred ccCC-EEEEcCCCCccCC
Confidence 8866 5999999999987
No 273
>COG0275 Predicted S-adenosylmethionine-dependent methyltransferase involved in cell envelope biogenesis [Cell envelope biogenesis, outer membrane]
Probab=91.55 E-value=0.57 Score=52.71 Aligned_cols=85 Identities=13% Similarity=0.176 Sum_probs=66.0
Q ss_pred HHHHHHhhcCCCCEEEEEcCccchHHHHHhcCCCCCceEEEEeCChHHHHHHHHHHhhhhhcccccCCCCCCCccEEEEE
Q 002218 703 EYALQHIKESCATTLVDFGCGSGSLLDSLLDYPTALEKIVGVDISQKSLSRAAKIIHSKLSKKLDAAVPCTDVKSAVLFD 782 (952)
Q Consensus 703 efVldlL~~~k~krVLDIGCGeG~ll~~LAr~g~~~~qVVGVDISeemLe~ArkrLsa~la~~~~~l~Pr~~~~nVtf~q 782 (952)
+.+++.|...++...+|.--|.|..+..+.+..+...+++|+|-++.+++.|++++... ..++++++
T Consensus 13 ~E~i~~L~~~~~giyiD~TlG~GGHS~~iL~~l~~~~~li~~DrD~~Ai~~a~~~l~~~-------------~~r~~~v~ 79 (314)
T COG0275 13 NEVVELLAPKPDGIYIDGTLGAGGHSRAILEKLPDLGRLIGIDRDPQAIAIAKERLKEF-------------DGRVTLVH 79 (314)
T ss_pred HHHHHhcccCCCcEEEEecCCCcHhHHHHHHhCCCCCeEEEEcCCHHHHHHHHHHhhcc-------------CCcEEEEe
Confidence 45667777788899999999999999999988766788999999999999999887532 24788888
Q ss_pred cCccccCCC-----CCCccEEEE
Q 002218 783 GSITVFDSR-----LHGFDIGTC 800 (952)
Q Consensus 783 GDa~dLpf~-----d~sFDVVVc 800 (952)
++..++... ..++|-|+.
T Consensus 80 ~~F~~l~~~l~~~~i~~vDGiL~ 102 (314)
T COG0275 80 GNFANLAEALKELGIGKVDGILL 102 (314)
T ss_pred CcHHHHHHHHHhcCCCceeEEEE
Confidence 877665432 235555554
No 274
>smart00358 DSRM Double-stranded RNA binding motif.
Probab=91.37 E-value=0.28 Score=41.17 Aligned_cols=66 Identities=17% Similarity=0.212 Sum_probs=47.3
Q ss_pred hhhHHHhhhhhcccCcceeccccCCccccccchhhhhhhhhcccccccccccCCCcccCCCceeEEEEEeeccCCccccc
Q 002218 395 PREMLFMFCRQHWLSEPVFSTCSNSLKESSESSRFYEKSAALESAETGKECTSGGGTAASDNVRCEVKIFSKSRDPILEC 474 (952)
Q Consensus 395 pr~~l~~fc~~~~l~ep~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~c~v~~~s~~~~~~~~~ 474 (952)
|...|-.+|..+++ .|.|... .. . |......|.|+|.|-.+ .
T Consensus 1 p~~~L~e~~~~~~~-~~~y~~~--~~--------------------------~--g~~~~~~f~~~v~i~~~-------~ 42 (67)
T smart00358 1 PKSLLQELAQKRGL-PPEYELV--KE--------------------------E--GPDHAPRFTVTVKVGGE-------Y 42 (67)
T ss_pred CchHHHHHHHHCCC-CCEEEEE--ee--------------------------e--CCCCCCcEEEEEEECCE-------E
Confidence 77899999999999 8999876 10 0 11112359999998432 1
Q ss_pred CchhhhhhhhhhHhhhhhHHHHHH
Q 002218 475 SPKEFYKKQNESIENASLKVLSWL 498 (952)
Q Consensus 475 ~~~~~~~~~~dai~~a~l~~l~~~ 498 (952)
-....-++..+|-|+||.++|..|
T Consensus 43 ~~~g~g~sKk~Ak~~AA~~al~~L 66 (67)
T smart00358 43 TGEGEGSSKKEAKQRAAEAALRSL 66 (67)
T ss_pred EEEeccCCHHHHHHHHHHHHHHhc
Confidence 124456778899999999999876
No 275
>PF03368 Dicer_dimer: Dicer dimerisation domain; InterPro: IPR005034 This domain is found in members of the Dicer protein family of dsRNA nucleases. This entry represents a dsRNA-binding domain. RNA interference (RNAi) is an ancient gene-silencing process that plays a fundamental role in diverse eukaryotic functions including viral defence, chromatin remodelling, genome rearrangement, developmental timing, brain morphogenesis, and stem cell maintenance. All RNAi pathways require the multidomain ribonuclease Dicer, which initiates RNAi by cleaving double-stranded RNA (dsRNA) substrates into small fragments ~25 nuleotides in length. A typical eukaryotic Dicer consists of a helicase domain (PDOC51192 from PROSITEDOC), a domain of unknown function, and a PAZ domain (PDOC50821 from PROSITEDOC) at the amino (N)-terminus as well as two ribonuclease III domains (PDOC00448 from PROSITEDOC) and a dsRNA-binding domain (dsRBD) (PDOC50137 from PROSITEDOC) at the carboxy (C)-terminus. The domain of unknown function of ~100 amino acids is predicted to adopt the canonical alpha-beta-beta-beta-alpha-fold found in all dsRBDs [, , , ].; GO: 0016891 endoribonuclease activity, producing 5'-phosphomonoesters; PDB: 2KOU_A.
Probab=91.23 E-value=0.34 Score=45.02 Aligned_cols=45 Identities=29% Similarity=0.319 Sum_probs=26.9
Q ss_pred eEEEeeecCCc----eeeeccccccchHHHHHHHHHH---HHcCCCCCCCCC
Q 002218 57 LYRCSLQLPEF----SVVSETFKKKKDAEQSAAEKAL---EKLGIDPSPNVP 101 (952)
Q Consensus 57 ~~~c~l~lp~~----~v~~~~~~~kkdaeq~aa~~al---~klg~~~~~~~~ 101 (952)
.|.|.+.||.- ++.+...+.||+|.++||-.|- .++|.=.....|
T Consensus 32 ~~~c~v~LP~~~pi~~i~g~~~~sk~~AK~sAAf~Ac~~L~~~g~ldd~L~P 83 (90)
T PF03368_consen 32 GFICTVILPINSPIRSIEGPPMRSKKLAKRSAAFEACKKLHEAGELDDHLLP 83 (90)
T ss_dssp -EEEEEE--TT-SS--EEEE--SSHHHHHHHHHHHHHHHHHHH-S-TTTS--
T ss_pred cEEEEEECCCCCCCCeEEccccccHHHHHHHHHHHHHHHHHHcCCCccccCC
Confidence 89999999972 4555789999999999998875 456653333344
No 276
>COG0571 Rnc dsRNA-specific ribonuclease [Transcription]
Probab=90.98 E-value=0.45 Score=51.74 Aligned_cols=71 Identities=21% Similarity=0.240 Sum_probs=54.4
Q ss_pred CCCChHhHHHHhccCceeEEEeeeeccccCCCCccccCCCCCceEEEeeecCCceeeeccccccchHHHHHHHHHHHHcC
Q 002218 14 MKLTPKAIIVQKFGRNAQFTVDEVQDVVQNGCPGLAIPQKGPCLYRCSLQLPEFSVVSETFKKKKDAEQSAAEKALEKLG 93 (952)
Q Consensus 14 ~~~tpka~~~q~~g~~~~y~~~ev~~~~~~~~~~~~~~q~~~~~~~c~l~lp~~~v~~~~~~~kkdaeq~aa~~al~klg 93 (952)
+++.....+++++...-.|++.... . |..-| .|.=++.+.+-.+-.|.=+-||.|||.||+.||++|+
T Consensus 163 ~Kt~LQe~~q~~~~~~p~Y~~v~~~-g----------~~h~~-~F~v~v~v~~~~~g~G~G~skk~AEq~AA~~al~~l~ 230 (235)
T COG0571 163 PKTRLQELLQAQGLVLPEYRLVKEE-G----------PAHDK-EFTVEVAVGGKELGTGKGRSKKEAEQAAAEQALKKLG 230 (235)
T ss_pred hhHHHHHHHHhcCCCCCeEEEeecc-C----------CCCCc-eEEEEEEECCeeEEEecccCHHHHHHHHHHHHHHHhc
Confidence 3444556778888888999887443 1 22333 7777888888777779999999999999999999999
Q ss_pred CCC
Q 002218 94 IDP 96 (952)
Q Consensus 94 ~~~ 96 (952)
+..
T Consensus 231 ~~~ 233 (235)
T COG0571 231 VKE 233 (235)
T ss_pred ccc
Confidence 854
No 277
>KOG1709 consensus Guanidinoacetate methyltransferase and related proteins [Amino acid transport and metabolism]
Probab=90.70 E-value=1.7 Score=47.34 Aligned_cols=98 Identities=15% Similarity=0.160 Sum_probs=71.5
Q ss_pred CCCCEEEEEcCccchHHHHHhcCCCCCceEEEEeCChHHHHHHHHHHhhhhhcccccCCCCCCCccEEEEEcCcccc--C
Q 002218 712 SCATTLVDFGCGSGSLLDSLLDYPTALEKIVGVDISQKSLSRAAKIIHSKLSKKLDAAVPCTDVKSAVLFDGSITVF--D 789 (952)
Q Consensus 712 ~k~krVLDIGCGeG~ll~~LAr~g~~~~qVVGVDISeemLe~ArkrLsa~la~~~~~l~Pr~~~~nVtf~qGDa~dL--p 789 (952)
.++.+||.||-|-|.....+.+..+ .+=+-|+..++.+++.+..- ++ .-.+|..+.|-.++. .
T Consensus 100 tkggrvLnVGFGMgIidT~iQe~~p--~~H~IiE~hp~V~krmr~~g------------w~-ek~nViil~g~WeDvl~~ 164 (271)
T KOG1709|consen 100 TKGGRVLNVGFGMGIIDTFIQEAPP--DEHWIIEAHPDVLKRMRDWG------------WR-EKENVIILEGRWEDVLNT 164 (271)
T ss_pred hCCceEEEeccchHHHHHHHhhcCC--cceEEEecCHHHHHHHHhcc------------cc-cccceEEEecchHhhhcc
Confidence 5789999999999999998887763 55567899999998886531 11 234788888877663 2
Q ss_pred CCCCCccEEEEccccccCChhHHHHHHHHHHHccCCC
Q 002218 790 SRLHGFDIGTCLEVIEHMEEDEASQFGNIVLSSFRPR 826 (952)
Q Consensus 790 f~d~sFDVVVcieVIEHL~dD~l~~L~eeI~RvLKPG 826 (952)
..++.||-|+---.-||-. |-+ .|.+.++|+|||+
T Consensus 165 L~d~~FDGI~yDTy~e~yE-dl~-~~hqh~~rLLkP~ 199 (271)
T KOG1709|consen 165 LPDKHFDGIYYDTYSELYE-DLR-HFHQHVVRLLKPE 199 (271)
T ss_pred ccccCcceeEeechhhHHH-HHH-HHHHHHhhhcCCC
Confidence 3577899997643335554 443 4446799999998
No 278
>PF14709 DND1_DSRM: double strand RNA binding domain from DEAD END PROTEIN 1
Probab=90.35 E-value=0.51 Score=43.14 Aligned_cols=75 Identities=20% Similarity=0.226 Sum_probs=56.0
Q ss_pred ChhhHHHhhhhhcccCcceeccccCCccccccchhhhhhhhhcccccccccccCCCcccCCCceeEEEEEeeccCC--cc
Q 002218 394 FPREMLFMFCRQHWLSEPVFSTCSNSLKESSESSRFYEKSAALESAETGKECTSGGGTAASDNVRCEVKIFSKSRD--PI 471 (952)
Q Consensus 394 ~pr~~l~~fc~~~~l~ep~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~c~v~~~s~~~~--~~ 471 (952)
.||.+|..+|...++..|+|...+ ..|-.....|.|+|.|-.-... -+
T Consensus 2 ~a~~~L~elC~k~~W~~P~y~l~~------------------------------~~Gp~~~~~F~ykV~i~~~~~~~~~~ 51 (80)
T PF14709_consen 2 SAVSLLNELCQKNKWGPPVYELVS------------------------------ESGPDHRKLFLYKVVIPGLEYPFEGS 51 (80)
T ss_pred CHHHHHHHHHHhcCCCCCeEEEEe------------------------------ccCCCccEEEEEEEEEcCCCCCCcce
Confidence 589999999999999999998871 1122233459999999877763 34
Q ss_pred cccCc-hhhhhhhhhhHhhhhhHHHHHH
Q 002218 472 LECSP-KEFYKKQNESIENASLKVLSWL 498 (952)
Q Consensus 472 ~~~~~-~~~~~~~~dai~~a~l~~l~~~ 498 (952)
++|-+ .+-=.+-.||=.+||..+|.+|
T Consensus 52 ~~~~~p~~~~~~~k~Ak~~AA~~~L~~L 79 (80)
T PF14709_consen 52 IECFGPTKPSSTKKEAKESAAQQALQAL 79 (80)
T ss_pred EEEccCCCcCccHHHHHHHHHHHHHHhc
Confidence 55544 4555667789999999999876
No 279
>PF01795 Methyltransf_5: MraW methylase family; InterPro: IPR002903 This is a family of S-adenosyl-L-methionine-dependent methyltransferases, which are found primarily, though not exclusively, in bacteria. The Escherichia coli protein is essential and has been linked to peptidoglycan biosynthesis [, ].; GO: 0008168 methyltransferase activity; PDB: 1N2X_A 1M6Y_A 1WG8_A 3TKA_A.
Probab=90.12 E-value=0.81 Score=51.68 Aligned_cols=85 Identities=16% Similarity=0.273 Sum_probs=57.7
Q ss_pred HHHHHHHhhcCCCCEEEEEcCccchHHHHHhcCCCCCceEEEEeCChHHHHHHHHHHhhhhhcccccCCCCCCCccEEEE
Q 002218 702 VEYALQHIKESCATTLVDFGCGSGSLLDSLLDYPTALEKIVGVDISQKSLSRAAKIIHSKLSKKLDAAVPCTDVKSAVLF 781 (952)
Q Consensus 702 ~efVldlL~~~k~krVLDIGCGeG~ll~~LAr~g~~~~qVVGVDISeemLe~ArkrLsa~la~~~~~l~Pr~~~~nVtf~ 781 (952)
.+.+++.+...++...+|.=-|.|..+..+++..++ .+++|+|.++++++.|++++.. ...++.++
T Consensus 9 l~Evl~~L~~~~~g~~vD~T~G~GGHS~aiL~~~~~-~~li~~DrD~~a~~~a~~~l~~-------------~~~r~~~~ 74 (310)
T PF01795_consen 9 LKEVLEALNPKPGGIYVDCTFGGGGHSKAILEKLPN-GRLIGIDRDPEALERAKERLKK-------------FDDRFIFI 74 (310)
T ss_dssp HHHHHHHHT--TT-EEEETT-TTSHHHHHHHHT-TT--EEEEEES-HHHHHHHHCCTCC-------------CCTTEEEE
T ss_pred HHHHHHhhCcCCCceEEeecCCcHHHHHHHHHhCCC-CeEEEecCCHHHHHHHHHHHhh-------------ccceEEEE
Confidence 345667777778889999999999999999987633 8999999999999999876542 23478888
Q ss_pred EcCccccCC------CCCCccEEEE
Q 002218 782 DGSITVFDS------RLHGFDIGTC 800 (952)
Q Consensus 782 qGDa~dLpf------~d~sFDVVVc 800 (952)
+++..++.. ...++|.|+.
T Consensus 75 ~~~F~~l~~~l~~~~~~~~~dgiL~ 99 (310)
T PF01795_consen 75 HGNFSNLDEYLKELNGINKVDGILF 99 (310)
T ss_dssp ES-GGGHHHHHHHTTTTS-EEEEEE
T ss_pred eccHHHHHHHHHHccCCCccCEEEE
Confidence 888776532 2245666665
No 280
>smart00715 LA Domain in the RNA-binding Lupus La protein; unknown function.
Probab=89.03 E-value=0.22 Score=45.76 Aligned_cols=79 Identities=28% Similarity=0.336 Sum_probs=62.4
Q ss_pred HHHHHHHHHHhhhhcccccccCCCchhhhHHhhhhcCcccccccceEEEeecccccccccccCcccccchHHHHHHHHHH
Q 002218 105 EAWDKLIASVKHLFSNEFLSSQSPLRGHFIAALRRDGDLYGSVPASVIAVCDSKLANLCKLINPKVESSHLLVLTYIMRA 184 (952)
Q Consensus 105 e~~~~l~~~~~~~f~~e~~~~~~pl~~h~~~~~~r~g~~~g~~p~~~~~~~d~k~~~~ck~~~~~~e~~p~~~~~~~~~a 184 (952)
|.-+.|+.+|.|-|||+=|.-+.=|..|+... =|.||+++|+.+. |+.++++ | ..+|.+|
T Consensus 2 ~~~~~i~~QvEfYFSd~NL~~D~fLr~~~~~~-------~g~Vpl~~i~~F~-r~k~l~~--------d----~~~i~~A 61 (80)
T smart00715 2 ELKQKIKKQVEYYFSDENLPRDKFLRKKMDKN-------DGYVPISTIASFK-RVKSLTT--------D----VNLIVEA 61 (80)
T ss_pred hHHHHHHHHHHHHcCHhhhhhCHHHHHHhccC-------CCCEEhHHHhCch-hHHHHcC--------C----HHHHHHH
Confidence 45578999999999999998888776666542 3899999999985 6666664 1 4789999
Q ss_pred hhccCCcEEeecCceeeeec
Q 002218 185 ATRLSEFVVTSEGQLSIWRK 204 (952)
Q Consensus 185 ~~~~~~~~~~s~~~~~~~~~ 204 (952)
.+.++- |.+++++.-|+|.
T Consensus 62 l~~S~~-lel~~d~~~VRR~ 80 (80)
T smart00715 62 LRSSPK-LEVSEDGLKVRRR 80 (80)
T ss_pred HHhCCe-EEEcCCCCeeCcC
Confidence 988764 8899998888773
No 281
>TIGR00027 mthyl_TIGR00027 methyltransferase, putative, TIGR00027 family. This model represents a set of probable methyltransferases, about 300 amino acids long, with essentially full length homology. Members share an N-terminal region described by Pfam model pfam02409. Included are a paralogous family of 12 proteins in Mycobacterium tuberculosis, plus close homologs in related species, a family of 8 in the archaeon Methanosarcina acetivorans, and small numbers of members in other species, including plants.
Probab=88.98 E-value=19 Score=39.53 Aligned_cols=169 Identities=11% Similarity=0.043 Sum_probs=98.1
Q ss_pred HHHHHHHHHHhhc---CCCCEEEEEcCccchHHHHHhcCCCCCceEEEEeCChHHHHHHHHHHhhhhhcccccCCCCCCC
Q 002218 699 KQRVEYALQHIKE---SCATTLVDFGCGSGSLLDSLLDYPTALEKIVGVDISQKSLSRAAKIIHSKLSKKLDAAVPCTDV 775 (952)
Q Consensus 699 ~QR~efVldlL~~---~k~krVLDIGCGeG~ll~~LAr~g~~~~qVVGVDISeemLe~ArkrLsa~la~~~~~l~Pr~~~ 775 (952)
..|-.++-+.+.. .....|+.+|||-=.-...|.... ...++-||. ++.++.-++.+.... ....
T Consensus 64 ~~Rtr~~D~~i~~~~~~g~~qvV~LGaGlDTr~~Rl~~~~--~~~~~EvD~-P~v~~~K~~~l~~~~---------~~~~ 131 (260)
T TIGR00027 64 AVRTRFFDDFLLAAVAAGIRQVVILGAGLDTRAYRLPWPD--GTRVFEVDQ-PAVLAFKEKVLAELG---------AEPP 131 (260)
T ss_pred HHHHHHHHHHHHHHHhcCCcEEEEeCCccccHHHhcCCCC--CCeEEECCC-hHHHHHHHHHHHHcC---------CCCC
Confidence 4455565444432 235679999999777666664321 256666664 456666555554210 0112
Q ss_pred ccEEEEEcCccc-cC--CCCCCc-----cEEEEccccccCChhHHHHHHHHHHHccCCC-EEEEEecCCchhH----HHH
Q 002218 776 KSAVLFDGSITV-FD--SRLHGF-----DIGTCLEVIEHMEEDEASQFGNIVLSSFRPR-ILIVSTPNYEYNA----ILQ 842 (952)
Q Consensus 776 ~nVtf~qGDa~d-Lp--f~d~sF-----DVVVcieVIEHL~dD~l~~L~eeI~RvLKPG-~LIISTPN~efN~----lf~ 842 (952)
.+..++..|+.+ +. ....+| -++++-+++.+++++....+.+.+.+...|| .+++...+.--.. ...
T Consensus 132 ~~~~~v~~Dl~~~w~~~L~~~gfd~~~ptl~i~EGvl~YL~~~~v~~ll~~i~~~~~~gs~l~~d~~~~~~~~~~~~~~~ 211 (260)
T TIGR00027 132 AHRRAVPVDLRQDWPAALAAAGFDPTAPTAWLWEGLLMYLTEEAVDALLAFIAELSAPGSRLAFDYVRPLDGEWRAGMRA 211 (260)
T ss_pred CceEEeccCchhhHHHHHHhCCCCCCCCeeeeecchhhcCCHHHHHHHHHHHHHhCCCCcEEEEEeccccchhHHHHHHH
Confidence 467778888751 11 012233 4788888999999988888888898888888 7777654431010 011
Q ss_pred hhccCccCCCCcchhhhccccccCCCCccccCHHHHHHHHHHHHHHcCcEEEEE
Q 002218 843 KSSSTIQEDDPDEKTQLQSCKFRNHDHKFEWTRDQFNCWATELAARHNYSVEFS 896 (952)
Q Consensus 843 ~L~~~ta~eYPde~~g~~~~~fRh~DHkFEWTReEFqsWae~La~q~GYsVefs 896 (952)
.... ...........+.+++.+...| +..+||.+.-.
T Consensus 212 ~~~~-------------~~~~~~~~~~~~~~~~~~~~~~----l~~~Gw~~~~~ 248 (260)
T TIGR00027 212 PVYH-------------AARGVDGSGLVFGIDRADVAEW----LAERGWRASEH 248 (260)
T ss_pred HHHH-------------hhhcccccccccCCChhhHHHH----HHHCCCeeecC
Confidence 1000 0011223344566889999865 56789988544
No 282
>PRK12372 ribonuclease III; Reviewed
Probab=88.96 E-value=0.85 Score=53.17 Aligned_cols=66 Identities=24% Similarity=0.335 Sum_probs=47.8
Q ss_pred ChHhHHH---HhccCc-eeEEEeeeeccccCCCCccccCCCCCceEEEeeecCCcee-eeccccccchHHHHHHHHHHHH
Q 002218 17 TPKAIIV---QKFGRN-AQFTVDEVQDVVQNGCPGLAIPQKGPCLYRCSLQLPEFSV-VSETFKKKKDAEQSAAEKALEK 91 (952)
Q Consensus 17 tpka~~~---q~~g~~-~~y~~~ev~~~~~~~~~~~~~~q~~~~~~~c~l~lp~~~v-~~~~~~~kkdaeq~aa~~al~k 91 (952)
-||-.+. |+.|.. -.|++.+... |... -.|.|.+.+.+..+ .+|.=+-||.|||.||+.||++
T Consensus 152 D~KS~LQE~~Q~~~~~~P~Y~lv~e~G-----------p~h~-~~F~V~V~v~g~~~~g~G~G~SKKeAEQ~AAr~AL~k 219 (413)
T PRK12372 152 DAKTLLQEYLQGHKIALPTYTVVATHG-----------AAHN-QQFEVECTVPKLDVKVSGSGASRRAAEQAAAKKALDE 219 (413)
T ss_pred CHHHHHHHHHHhcCCCCCeeEEeeeec-----------CCCC-ceEEEEEEECCeEEEEEEEeCCHHHHHHHHHHHHHHH
Confidence 5777654 444433 4687764332 2223 38999999998644 4688899999999999999999
Q ss_pred cCC
Q 002218 92 LGI 94 (952)
Q Consensus 92 lg~ 94 (952)
|+-
T Consensus 220 L~~ 222 (413)
T PRK12372 220 VMA 222 (413)
T ss_pred Hhc
Confidence 994
No 283
>KOG3201 consensus Uncharacterized conserved protein [Function unknown]
Probab=88.66 E-value=0.67 Score=48.32 Aligned_cols=121 Identities=16% Similarity=0.211 Sum_probs=74.7
Q ss_pred HHHHHhhcCCCCEEEEEcCccchHHHHHhcCCCCCceEEEEeCChHHHHHHHHHHhhhhhcccccCCCCCCCccEEEEEc
Q 002218 704 YALQHIKESCATTLVDFGCGSGSLLDSLLDYPTALEKIVGVDISQKSLSRAAKIIHSKLSKKLDAAVPCTDVKSAVLFDG 783 (952)
Q Consensus 704 fVldlL~~~k~krVLDIGCGeG~ll~~LAr~g~~~~qVVGVDISeemLe~ArkrLsa~la~~~~~l~Pr~~~~nVtf~qG 783 (952)
+++.......+.+||++|-|--.++..|.....+...|.-.|=+++.++..++........ ....+....-
T Consensus 20 ~~l~~~n~~rg~~ilelgggft~laglmia~~a~~~~v~ltdgne~svrnv~ki~~~n~~s---------~~tsc~vlrw 90 (201)
T KOG3201|consen 20 TILRDPNKIRGRRILELGGGFTGLAGLMIACKAPDSSVWLTDGNEESVRNVEKIRNSNMAS---------SLTSCCVLRW 90 (201)
T ss_pred HHHhchhHHhHHHHHHhcCchhhhhhhheeeecCCceEEEecCCHHHHHHHHHHHhccccc---------ccceehhhHH
Confidence 4555555566789999999965555444333335688999999999998887654322110 1111111111
Q ss_pred Ccc--ccCCCCCCccEEEEccccccCChhHHHHHHHHHHHccCCC-EEEEEecCC
Q 002218 784 SIT--VFDSRLHGFDIGTCLEVIEHMEEDEASQFGNIVLSSFRPR-ILIVSTPNY 835 (952)
Q Consensus 784 Da~--dLpf~d~sFDVVVcieVIEHL~dD~l~~L~eeI~RvLKPG-~LIISTPN~ 835 (952)
... +.......||+|+|.+.+-. . +-...+.+.|.++|+|. ..++..|..
T Consensus 91 ~~~~aqsq~eq~tFDiIlaADClFf-d-E~h~sLvdtIk~lL~p~g~Al~fsPRR 143 (201)
T KOG3201|consen 91 LIWGAQSQQEQHTFDIILAADCLFF-D-EHHESLVDTIKSLLRPSGRALLFSPRR 143 (201)
T ss_pred HHhhhHHHHhhCcccEEEeccchhH-H-HHHHHHHHHHHHHhCcccceeEecCcc
Confidence 111 11113458999999886532 2 44567778999999997 777777754
No 284
>KOG2798 consensus Putative trehalase [Carbohydrate transport and metabolism]
Probab=88.40 E-value=2.9 Score=47.58 Aligned_cols=155 Identities=15% Similarity=0.153 Sum_probs=88.4
Q ss_pred CCCEEEEEcCccchHHHHHhcCCCCCceEEEEeCChHHHHHHHHHHhhh---------------hhcc--cccCCC----
Q 002218 713 CATTLVDFGCGSGSLLDSLLDYPTALEKIVGVDISQKSLSRAAKIIHSK---------------LSKK--LDAAVP---- 771 (952)
Q Consensus 713 k~krVLDIGCGeG~ll~~LAr~g~~~~qVVGVDISeemLe~ArkrLsa~---------------la~~--~~~l~P---- 771 (952)
..-+||--|||.|+++..|+..| ..+-|=+.|--|+-...-.+... .... .+.+-|
T Consensus 150 ~ki~iLvPGaGlGRLa~dla~~G---~~~qGNEfSy~Mli~S~FiLN~~~~~nq~~IYPfIh~~sn~~~~dDQlrpi~~P 226 (369)
T KOG2798|consen 150 TKIRILVPGAGLGRLAYDLACLG---FKCQGNEFSYFMLICSSFILNYCKQENQFTIYPFIHQYSNSLSRDDQLRPISIP 226 (369)
T ss_pred cCceEEecCCCchhHHHHHHHhc---ccccccHHHHHHHHHHHHHHHhhccCCcEEEEeeeeccccccccccccccccCc
Confidence 34589999999999999999988 67788888888775443222100 0000 000111
Q ss_pred -------CCCCccEEEEEcCccccCCC---CCCccEEEEccccccCChhHHHHHHHHHHHccCCCEEEEEecCCchhHHH
Q 002218 772 -------CTDVKSAVLFDGSITVFDSR---LHGFDIGTCLEVIEHMEEDEASQFGNIVLSSFRPRILIVSTPNYEYNAIL 841 (952)
Q Consensus 772 -------r~~~~nVtf~qGDa~dLpf~---d~sFDVVVcieVIEHL~dD~l~~L~eeI~RvLKPG~LIISTPN~efN~lf 841 (952)
+....+.....||..+.-.. .+.||+|+..+.|.--. ... .+.+.|..+||||.+.|-. .+++
T Consensus 227 D~~p~~~~~~~~~fsicaGDF~evy~~s~~~~~~d~VvTcfFIDTa~-Nil-eYi~tI~~iLk~GGvWiNl-----GPLl 299 (369)
T KOG2798|consen 227 DIHPASSNGNTGSFSICAGDFLEVYGTSSGAGSYDVVVTCFFIDTAH-NIL-EYIDTIYKILKPGGVWINL-----GPLL 299 (369)
T ss_pred cccccccCCCCCCccccccceeEEecCcCCCCccceEEEEEEeechH-HHH-HHHHHHHHhccCCcEEEec-----ccee
Confidence 11122233355666553222 24799998877665443 333 3446799999999554421 2222
Q ss_pred HhhccCccCCCCcchhhhccccccCCCCccccCHHHHHHHHHHHHHHcCcEEEEE
Q 002218 842 QKSSSTIQEDDPDEKTQLQSCKFRNHDHKFEWTRDQFNCWATELAARHNYSVEFS 896 (952)
Q Consensus 842 ~~L~~~ta~eYPde~~g~~~~~fRh~DHkFEWTReEFqsWae~La~q~GYsVefs 896 (952)
-.+ .++ .-....-..+++-+++. .++...||.++-.
T Consensus 300 YHF--------~d~-------~g~~~~~siEls~edl~----~v~~~~GF~~~ke 335 (369)
T KOG2798|consen 300 YHF--------EDT-------HGVENEMSIELSLEDLK----RVASHRGFEVEKE 335 (369)
T ss_pred eec--------cCC-------CCCcccccccccHHHHH----HHHHhcCcEEEEe
Confidence 111 000 00022334678888888 5778889998643
No 285
>TIGR03516 ppisom_GldI peptidyl-prolyl isomerase, gliding motility-associated. Members of this protein family are exclusive to the Bacteroidetes phylum (previously Cytophaga-Flavobacteria-Bacteroides). GldI is a FKBP-type peptidyl-prolyl cis-trans isomerase (pfam00254) linked to a type of rapid surface gliding motility found in certain Bacteroidetes, such as Flavobacterium johnsoniae and Cytophaga hutchinsonii. Knockout of this gene abolishes the gliding phenotype. Gliding motility appears closely linked to chitin utilization in the model species Flavobacterium johnsoniae. This family is only found in Bacteroidetes containing the suite of genes proposed to confer the gliding motility phenotype.
Probab=87.99 E-value=1.6 Score=45.46 Aligned_cols=107 Identities=15% Similarity=0.261 Sum_probs=75.6
Q ss_pred cCCCCceeee-ccCCCCCCccCCCCceeEEEEEEEEeecccchhhhhccc---cceEEEeccCccchhhhhhhhhccccc
Q 002218 561 AIPEHGIYCL-SIGGPDSGIYPSNGCLSFISYSVSLVIEGETMKELLESR---EEFEFEMGTGAVIPQVEVVTAQMSVGQ 636 (952)
Q Consensus 561 ~~~~~~~~~~-~~~~~~~~~~p~~gs~~~i~y~~~l~~~~~~~~~~~e~~---~~~~fe~g~~a~~~~l~~v~~q~sv~q 636 (952)
......+... ..+++.+|..|..|+.|.+-|.+.+. +|+. ++|. ..++|.+|.+.+.+-++..+..|.+|+
T Consensus 65 ~~t~sGl~Y~v~~~~~g~g~~p~~gd~V~v~Y~~~~~-dG~v----~~ss~~~~P~~f~vg~~~vi~Gl~e~L~~Mk~Ge 139 (177)
T TIGR03516 65 ETSQNGFWYYYNQKDTGEGTTPEFGDLVTFEYDIRAL-DGDV----IYSEEELGPQTYKVDQQDLFSGLRDGLKLMKEGE 139 (177)
T ss_pred eECCCccEEEEEEecCCCCCcCCCCCEEEEEEEEEeC-CCCE----EEeCCCCCCEEEEeCCcchhHHHHHHHcCCCCCC
Confidence 3444444333 44678889999999999999999986 3432 2322 358999999999999999999999999
Q ss_pred cceecccCCchhhhhhhccCcccchhcccccccccceeeeeccc
Q 002218 637 SACFCKELPPQELILAAADDSARTFSLLSSRACCLEYHITLLRV 680 (952)
Q Consensus 637 ~~~~~~~l~~~~l~lAa~~~~~~DiSlLs~d~~~LEyyI~LL~v 680 (952)
.+.|. +||...|=.-. +-..++..+. +.+-|.++..
T Consensus 140 ~~~~~--iP~~~AYG~~g-----~~~~Ippns~-L~f~IeL~~i 175 (177)
T TIGR03516 140 TATFL--FPSHKAYGYYG-----DQNKIGPNLP-IISTVTLLNI 175 (177)
T ss_pred EEEEE--ECHHHcCCCCC-----CCCCcCcCCc-EEEEEEEEEe
Confidence 99998 66654332211 1123555666 7777777654
No 286
>COG5459 Predicted rRNA methylase [Translation, ribosomal structure and biogenesis]
Probab=87.56 E-value=1.2 Score=51.32 Aligned_cols=112 Identities=13% Similarity=0.135 Sum_probs=61.2
Q ss_pred cCCCCEEEEEcCccchHHHHHhcCCCCCceEEEEeCChHHHHHHHHHHhhhhhcccccCCCCCCCccEEEEEcCccc--c
Q 002218 711 ESCATTLVDFGCGSGSLLDSLLDYPTALEKIVGVDISQKSLSRAAKIIHSKLSKKLDAAVPCTDVKSAVLFDGSITV--F 788 (952)
Q Consensus 711 ~~k~krVLDIGCGeG~ll~~LAr~g~~~~qVVGVDISeemLe~ArkrLsa~la~~~~~l~Pr~~~~nVtf~qGDa~d--L 788 (952)
...+++|||+|-|.|.-+.++-.-.+....++-++.|+..-+... .++... ......+...|+.. +
T Consensus 111 dfapqsiLDvG~GPgtgl~A~n~i~Pdl~sa~ile~sp~lrkV~~-tl~~nv-----------~t~~td~r~s~vt~dRl 178 (484)
T COG5459 111 DFAPQSILDVGAGPGTGLWALNDIWPDLKSAVILEASPALRKVGD-TLAENV-----------STEKTDWRASDVTEDRL 178 (484)
T ss_pred CcCcchhhccCCCCchhhhhhcccCCCchhhhhhccCHHHHHHHH-HHHhhc-----------ccccCCCCCCccchhcc
Confidence 456789999999999988777655544567777787775444432 222111 00111222223322 1
Q ss_pred CCC-CCCccEEEEccccccCC-hhHHHHHHHHHHHccCCC-EEEEEecC
Q 002218 789 DSR-LHGFDIGTCLEVIEHME-EDEASQFGNIVLSSFRPR-ILIVSTPN 834 (952)
Q Consensus 789 pf~-d~sFDVVVcieVIEHL~-dD~l~~L~eeI~RvLKPG-~LIISTPN 834 (952)
+++ ...+++|+..+-|-|.. +.+...+.+.+..++.|| .++|..|.
T Consensus 179 ~lp~ad~ytl~i~~~eLl~d~~ek~i~~~ie~lw~l~~~gg~lVivErG 227 (484)
T COG5459 179 SLPAADLYTLAIVLDELLPDGNEKPIQVNIERLWNLLAPGGHLVIVERG 227 (484)
T ss_pred CCCccceeehhhhhhhhccccCcchHHHHHHHHHHhccCCCeEEEEeCC
Confidence 111 12344444443333333 233455677899999999 66665543
No 287
>PF02636 Methyltransf_28: Putative S-adenosyl-L-methionine-dependent methyltransferase; InterPro: IPR003788 This entry describes proteins of unknown function.; PDB: 4F3N_A 1ZKD_B.
Probab=87.14 E-value=1.9 Score=46.54 Aligned_cols=84 Identities=15% Similarity=0.145 Sum_probs=53.4
Q ss_pred CCEEEEEcCccchHHHHHhcCCC-------CCceEEEEeCChHHHHHHHHHHhhhhhcccccCCCCCCCccEEEEEcCcc
Q 002218 714 ATTLVDFGCGSGSLLDSLLDYPT-------ALEKIVGVDISQKSLSRAAKIIHSKLSKKLDAAVPCTDVKSAVLFDGSIT 786 (952)
Q Consensus 714 ~krVLDIGCGeG~ll~~LAr~g~-------~~~qVVGVDISeemLe~ArkrLsa~la~~~~~l~Pr~~~~nVtf~qGDa~ 786 (952)
+-+|+|+|.|+|.++..+++... ...+++-||+|+.+.+.-++++...... ......+|.++ .++.
T Consensus 19 ~~~ivE~GaG~G~La~diL~~l~~~~p~~~~~~~y~ivE~Sp~L~~~Q~~~L~~~~~~------~~~~~~~i~w~-~~l~ 91 (252)
T PF02636_consen 19 PLRIVEIGAGRGTLARDILRYLRKFSPEVYKRLRYHIVEISPYLRERQKERLSEHAPK------DTEFGDPIRWL-DDLE 91 (252)
T ss_dssp -EEEEEES-TTSHHHHHHHHHHCCTTHHHHTTCEEEEE-TTCCCHHHHHHHCCCH---------STTTCGCEEEE-SSGG
T ss_pred CcEEEEECCCchHHHHHHHHHHHHhChhhhhcceEEEEcCCHHHHHHHHHHhhhhccc------ccccCCccchh-hhhh
Confidence 46999999999999976654321 1258999999999988888776432100 00123357773 3554
Q ss_pred ccCCCCCCccEEEEccccccCC
Q 002218 787 VFDSRLHGFDIGTCLEVIEHME 808 (952)
Q Consensus 787 dLpf~d~sFDVVVcieVIEHL~ 808 (952)
+.| ..-+|+++|++.-+|
T Consensus 92 ~~p----~~~~iiaNE~~DAlP 109 (252)
T PF02636_consen 92 EVP----FPGFIIANELFDALP 109 (252)
T ss_dssp CS-----CCEEEEEESSGGGS-
T ss_pred ccc----CCEEEEEeeehhcCc
Confidence 443 567899999998888
No 288
>cd07323 LAM LA motif RNA-binding domain. This domain is found at the N-terminus of La RNA-binding proteins as well as in other related proteins. Typically, the domain co-occurs with an RNA-recognition motif (RRM), and together these domains function to bind primary transcripts of RNA polymerase III in the La autoantigen (Lupus La protein, LARP3, or Sjoegren syndrome type B antigen, SS-B). A variety of La-related proteins (LARPs or La ribonucleoproteins), with differing domain architecture, appear to function as RNA-binding proteins in eukaryotic cellular processes.
Probab=86.78 E-value=0.29 Score=44.36 Aligned_cols=74 Identities=30% Similarity=0.372 Sum_probs=57.9
Q ss_pred HHHHHHHhhhhcccccccCCCchhhhHHhhhhcCcccccccceEEEeecccccccccccCcccccchHHHHHHHHHHhhc
Q 002218 108 DKLIASVKHLFSNEFLSSQSPLRGHFIAALRRDGDLYGSVPASVIAVCDSKLANLCKLINPKVESSHLLVLTYIMRAATR 187 (952)
Q Consensus 108 ~~l~~~~~~~f~~e~~~~~~pl~~h~~~~~~r~g~~~g~~p~~~~~~~d~k~~~~ck~~~~~~e~~p~~~~~~~~~a~~~ 187 (952)
+.|+.+|.|-|||+=|..++=|..|+ +. =|.||+++|+.+- |+-++|+-. ..|.+|.+.
T Consensus 2 ~~i~~QvEfYFSd~NL~~D~fL~~~~------~~--~g~Vpl~~i~~F~-r~k~l~~~~------------~~i~~Al~~ 60 (75)
T cd07323 2 EKIKKQVEYYFSDENLCKDRFLRSLM------DD--DGWVPLSLLASFN-RVKKLTTDV------------ELILEALRD 60 (75)
T ss_pred hHHHhhhHhccCHhhhCcCHHHHHhc------CC--CCCEEHHHHhCch-HHHHHcCCH------------HHHHHHHHh
Confidence 46899999999999999997666666 33 3999999999884 566666422 688999988
Q ss_pred cCCcEEeecCceeeee
Q 002218 188 LSEFVVTSEGQLSIWR 203 (952)
Q Consensus 188 ~~~~~~~s~~~~~~~~ 203 (952)
++ .|-+++++-.|+|
T Consensus 61 s~-~lel~~~~~~Vrr 75 (75)
T cd07323 61 SS-VVEVSEDGTKVRR 75 (75)
T ss_pred CC-eEEEeCCCCccCC
Confidence 66 4888888777765
No 289
>PF07757 AdoMet_MTase: Predicted AdoMet-dependent methyltransferase; InterPro: IPR011671 tRNA (uracil-O(2)-)-methyltransferase catalyses the formation of O(2)-methyl-uracil at position 44 (m2U44) in tRNA(Ser) [].; GO: 0008168 methyltransferase activity
Probab=86.60 E-value=0.96 Score=44.18 Aligned_cols=31 Identities=32% Similarity=0.405 Sum_probs=27.4
Q ss_pred CCCEEEEEcCccchHHHHHhcCCCCCceEEEEeC
Q 002218 713 CATTLVDFGCGSGSLLDSLLDYPTALEKIVGVDI 746 (952)
Q Consensus 713 k~krVLDIGCGeG~ll~~LAr~g~~~~qVVGVDI 746 (952)
+...-+|||||+|.+..-|...| ..=.|+|.
T Consensus 58 ~~~~FVDlGCGNGLLV~IL~~EG---y~G~GiD~ 88 (112)
T PF07757_consen 58 KFQGFVDLGCGNGLLVYILNSEG---YPGWGIDA 88 (112)
T ss_pred CCCceEEccCCchHHHHHHHhCC---CCcccccc
Confidence 45689999999999999999888 78899995
No 290
>PF06962 rRNA_methylase: Putative rRNA methylase; InterPro: IPR010719 This family contains a number of putative rRNA methylases.; PDB: 3EEY_H 3LBY_A 3MTI_A.
Probab=86.23 E-value=4 Score=41.38 Aligned_cols=74 Identities=12% Similarity=0.116 Sum_probs=49.1
Q ss_pred eEEEEeCChHHHHHHHHHHhhhhhcccccCCCCCCCccEEEEEcCccccCCC-C-CCccEEEEccccccCCh--------
Q 002218 740 KIVGVDISQKSLSRAAKIIHSKLSKKLDAAVPCTDVKSAVLFDGSITVFDSR-L-HGFDIGTCLEVIEHMEE-------- 809 (952)
Q Consensus 740 qVVGVDISeemLe~ArkrLsa~la~~~~~l~Pr~~~~nVtf~qGDa~dLpf~-d-~sFDVVVcieVIEHL~d-------- 809 (952)
+|+|+||.+++|+.+++++.+. ....++++++.+=++++.- . +.+|+++.+ +-++|.
T Consensus 1 kVyaFDIQ~~Ai~~T~~rL~~~-----------~~~~~v~li~~sHe~l~~~i~~~~v~~~iFN--LGYLPggDk~i~T~ 67 (140)
T PF06962_consen 1 KVYAFDIQEEAIENTRERLEEA-----------GLEDRVTLILDSHENLDEYIPEGPVDAAIFN--LGYLPGGDKSITTK 67 (140)
T ss_dssp EEEEEES-HHHHHHHHHHHHHT-----------T-GSGEEEEES-GGGGGGT--S--EEEEEEE--ESB-CTS-TTSB--
T ss_pred CEEEEECHHHHHHHHHHHHHhc-----------CCCCcEEEEECCHHHHHhhCccCCcCEEEEE--CCcCCCCCCCCCcC
Confidence 5899999999999999998642 2234799999887776542 2 479988764 345552
Q ss_pred --hHHHHHHHHHHHccCCCE
Q 002218 810 --DEASQFGNIVLSSFRPRI 827 (952)
Q Consensus 810 --D~l~~L~eeI~RvLKPG~ 827 (952)
.-..++. .+.++|+||.
T Consensus 68 ~~TTl~Al~-~al~lL~~gG 86 (140)
T PF06962_consen 68 PETTLKALE-AALELLKPGG 86 (140)
T ss_dssp HHHHHHHHH-HHHHHEEEEE
T ss_pred cHHHHHHHH-HHHHhhccCC
Confidence 2344554 5899999983
No 291
>COG3510 CmcI Cephalosporin hydroxylase [Defense mechanisms]
Probab=85.84 E-value=3.5 Score=44.24 Aligned_cols=110 Identities=22% Similarity=0.219 Sum_probs=76.8
Q ss_pred HHHhhcCCCCEEEEEcCccchHHHHHhc---CCCCCceEEEEeCChHHHHHHHHHHhhhhhcccccCCCCCCCccEEEEE
Q 002218 706 LQHIKESCATTLVDFGCGSGSLLDSLLD---YPTALEKIVGVDISQKSLSRAAKIIHSKLSKKLDAAVPCTDVKSAVLFD 782 (952)
Q Consensus 706 ldlL~~~k~krVLDIGCGeG~ll~~LAr---~g~~~~qVVGVDISeemLe~ArkrLsa~la~~~~~l~Pr~~~~nVtf~q 782 (952)
.+++-..++..|+++|.-.|.-+.+.|. ..+...+|+|+||+-..++.+..+ .+.|.|++
T Consensus 62 Qellw~~~P~lvIE~Gs~~GGSal~fA~~m~s~Gq~~kvl~vdIdi~~~~p~a~e-----------------~p~i~f~e 124 (237)
T COG3510 62 QELLWELQPSLVIEFGSRHGGSALFFANMMISIGQPFKVLGVDIDIKPLDPAARE-----------------VPDILFIE 124 (237)
T ss_pred HHHHHhcCCceeEeeccccCchhhhhhHhHHhcCCCceEEEEecccCcCChhhhc-----------------CCCeEEEe
Confidence 3445566889999999988877665553 222457999999999888776432 35899999
Q ss_pred cCccccCC-------CCCCccEEEEccccccCChhHHHHHHHHHHHccCCC-EEEEEecC
Q 002218 783 GSITVFDS-------RLHGFDIGTCLEVIEHMEEDEASQFGNIVLSSFRPR-ILIVSTPN 834 (952)
Q Consensus 783 GDa~dLpf-------~d~sFDVVVcieVIEHL~dD~l~~L~eeI~RvLKPG-~LIISTPN 834 (952)
|+-.++.. ..+.--+.+|.+.-||+. ..+..+. .+.++|..| .+++..-|
T Consensus 125 gss~dpai~eqi~~~~~~y~kIfvilDsdHs~~-hvLAel~-~~~pllsaG~Y~vVeDs~ 182 (237)
T COG3510 125 GSSTDPAIAEQIRRLKNEYPKIFVILDSDHSME-HVLAELK-LLAPLLSAGDYLVVEDSN 182 (237)
T ss_pred CCCCCHHHHHHHHHHhcCCCcEEEEecCCchHH-HHHHHHH-HhhhHhhcCceEEEeccc
Confidence 99877532 123335677778878776 5555553 578888889 77665444
No 292
>KOG1562 consensus Spermidine synthase [Amino acid transport and metabolism]
Probab=85.62 E-value=2.4 Score=47.85 Aligned_cols=111 Identities=14% Similarity=0.214 Sum_probs=78.8
Q ss_pred CCCCEEEEEcCccchHHHHHhcCCCCCceEEEEeCChHHHHHHHHHHhhhhhcccccCCCCCCCccEEEEEcCccccC--
Q 002218 712 SCATTLVDFGCGSGSLLDSLLDYPTALEKIVGVDISQKSLSRAAKIIHSKLSKKLDAAVPCTDVKSAVLFDGSITVFD-- 789 (952)
Q Consensus 712 ~k~krVLDIGCGeG~ll~~LAr~g~~~~qVVGVDISeemLe~ArkrLsa~la~~~~~l~Pr~~~~nVtf~qGDa~dLp-- 789 (952)
..+++||-||-|.|.+.+..+++ .+..++.-+|+++..++..++-+.+...+ -..++|.+.-||...+-
T Consensus 120 ~npkkvlVVgggDggvlrevikH-~~ve~i~~~eiD~~Vie~sk~y~p~la~g--------y~~~~v~l~iGDG~~fl~~ 190 (337)
T KOG1562|consen 120 PNPKKVLVVGGGDGGVLREVIKH-KSVENILLCEIDENVIESSKQYLPTLACG--------YEGKKVKLLIGDGFLFLED 190 (337)
T ss_pred CCCCeEEEEecCCccceeeeecc-ccccceeeehhhHHHHHHHHHHhHHHhcc--------cCCCceEEEeccHHHHHHH
Confidence 36789999999999999999988 47899999999999999998877654433 24468999999876542
Q ss_pred CCCCCccEEEEccccccCChh---HHHHHHHHHHHccCCCEEEEEe
Q 002218 790 SRLHGFDIGTCLEVIEHMEED---EASQFGNIVLSSFRPRILIVST 832 (952)
Q Consensus 790 f~d~sFDVVVcieVIEHL~dD---~l~~L~eeI~RvLKPG~LIIST 832 (952)
...+.||+|+.--. +-+.+. -.+.+.+-+.+.|||+.++++.
T Consensus 191 ~~~~~~dVii~dss-dpvgpa~~lf~~~~~~~v~~aLk~dgv~~~q 235 (337)
T KOG1562|consen 191 LKENPFDVIITDSS-DPVGPACALFQKPYFGLVLDALKGDGVVCTQ 235 (337)
T ss_pred hccCCceEEEEecC-CccchHHHHHHHHHHHHHHHhhCCCcEEEEe
Confidence 23678999975221 112211 1233445688999999444443
No 293
>cd00315 Cyt_C5_DNA_methylase Cytosine-C5 specific DNA methylases; Methyl transfer reactions play an important role in many aspects of biology. Cytosine-specific DNA methylases are found both in prokaryotes and eukaryotes. DNA methylation, or the covalent addition of a methyl group to cytosine within the context of the CpG dinucleotide, has profound effects on the mammalian genome. These effects include transcriptional repression via inhibition of transcription factor binding or the recruitment of methyl-binding proteins and their associated chromatin remodeling factors, X chromosome inactivation, imprinting and the suppression of parasitic DNA sequences. DNA methylation is also essential for proper embryonic development and is an important player in both DNA repair and genome stability.
Probab=85.31 E-value=1.7 Score=47.75 Aligned_cols=66 Identities=20% Similarity=0.255 Sum_probs=50.5
Q ss_pred EEEEEcCccchHHHHHhcCCCCCceEEEEeCChHHHHHHHHHHhhhhhcccccCCCCCCCccEEEEEcCccccCCC--CC
Q 002218 716 TLVDFGCGSGSLLDSLLDYPTALEKIVGVDISQKSLSRAAKIIHSKLSKKLDAAVPCTDVKSAVLFDGSITVFDSR--LH 793 (952)
Q Consensus 716 rVLDIGCGeG~ll~~LAr~g~~~~qVVGVDISeemLe~ArkrLsa~la~~~~~l~Pr~~~~nVtf~qGDa~dLpf~--d~ 793 (952)
+++|+-||.|.+...+.+.| ...+.++|+++.+++..+++.. . ..+.+|+.++... ..
T Consensus 2 ~v~dLFsG~Gg~~~gl~~~G--~~~v~a~e~~~~a~~~~~~N~~-----------------~-~~~~~Di~~~~~~~~~~ 61 (275)
T cd00315 2 RVIDLFAGIGGFRLGLEKAG--FEIVAANEIDKSAAETYEANFP-----------------N-KLIEGDITKIDEKDFIP 61 (275)
T ss_pred cEEEEccCcchHHHHHHHcC--CEEEEEEeCCHHHHHHHHHhCC-----------------C-CCccCccccCchhhcCC
Confidence 68999999999998888776 3668899999999988866531 1 1556777776543 35
Q ss_pred CccEEEEc
Q 002218 794 GFDIGTCL 801 (952)
Q Consensus 794 sFDVVVci 801 (952)
.+|+++..
T Consensus 62 ~~D~l~~g 69 (275)
T cd00315 62 DIDLLTGG 69 (275)
T ss_pred CCCEEEeC
Confidence 79999874
No 294
>PF11599 AviRa: RRNA methyltransferase AviRa; InterPro: IPR024268 This family of proteins includes the methyltransferase AviRa from Streptomyces viridochromogenes. This protein mediates the resistance to the antibiotic avilamycin. AviRa methylates a specific guanine base within the peptidyl-transferase loop of the 23S ribosomal RNA [].; PDB: 1O9H_A 1O9G_A.
Probab=85.24 E-value=1.2 Score=48.38 Aligned_cols=137 Identities=20% Similarity=0.158 Sum_probs=74.7
Q ss_pred hhHHHHHHHHHHHhhcCCCCEEEEEcCccchHHHHHhc-CCCCCceEEEEeCChHHHHHHHHHHhhh--------hhc--
Q 002218 696 PLSKQRVEYALQHIKESCATTLVDFGCGSGSLLDSLLD-YPTALEKIVGVDISQKSLSRAAKIIHSK--------LSK-- 764 (952)
Q Consensus 696 PL~~QR~efVldlL~~~k~krVLDIGCGeG~ll~~LAr-~g~~~~qVVGVDISeemLe~ArkrLsa~--------la~-- 764 (952)
-|..+-++..+.++....+-++.|-.||.|+++..+.- ++.....|+|-||++++|+.|++++.-. ...
T Consensus 34 RLAsEi~qR~l~~l~~~~p~tLyDPCCG~gyLLTVlGLLh~~~l~~v~aSDId~~aL~lA~kNL~LLt~eGL~~R~~eL~ 113 (246)
T PF11599_consen 34 RLASEIFQRALHYLEGKGPYTLYDPCCGSGYLLTVLGLLHRRRLRRVYASDIDEDALELARKNLSLLTPEGLEARREELR 113 (246)
T ss_dssp HHHHHHHHHHHCTSSS-S-EEEEETT-TTSHHHHHHHHHTGGGEEEEEEEES-HHHHHHHHHHHHCCSHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhcCCCCeeeeccCCCccHHHHHHHHhhhHHHHhHhcccCCHHHHHHHHHhhhhccHhHHHHHHHHHH
Confidence 34444445555555556678999999999999865542 2224578999999999999999887510 000
Q ss_pred --------------------ccccCCCCCCCccEEEEEcCccccCC-----CCCCccEEEEc----ccccc---CChhHH
Q 002218 765 --------------------KLDAAVPCTDVKSAVLFDGSITVFDS-----RLHGFDIGTCL----EVIEH---MEEDEA 812 (952)
Q Consensus 765 --------------------~~~~l~Pr~~~~nVtf~qGDa~dLpf-----~d~sFDVVVci----eVIEH---L~dD~l 812 (952)
..+++.-.+......+.++|+.+... .....|+|+.- +..+| -+.++.
T Consensus 114 ~~~e~~~kps~~eAl~sA~RL~~~l~~~g~~~p~~~~~aDvf~~~~~~~~~~~~~~diViTDlPYG~~t~W~g~~~~~p~ 193 (246)
T PF11599_consen 114 ELYEQYGKPSHAEALESADRLRERLAAEGGDEPHAIFRADVFDPSPLAVLDAGFTPDIVITDLPYGEMTSWQGEGSGGPV 193 (246)
T ss_dssp HHHHHH--HHHHHHHHHHHHHHHHHHHTTSS--EEEEE--TT-HHHHHHHHTT---SEEEEE--CCCSSSTTS---HHHH
T ss_pred HHHHHcCCchHHHHHHHHHHHHHHHHhcCCCCchhheeecccCCchhhhhccCCCCCEEEecCCCcccccccCCCCCCcH
Confidence 00001112345567888888877322 23446888872 22222 234566
Q ss_pred HHHHHHHHHccCCC-EEEEEe
Q 002218 813 SQFGNIVLSSFRPR-ILIVST 832 (952)
Q Consensus 813 ~~L~eeI~RvLKPG-~LIIST 832 (952)
..+++.+..+|-++ ++.+++
T Consensus 194 ~~ml~~l~~vLp~~sVV~v~~ 214 (246)
T PF11599_consen 194 AQMLNSLAPVLPERSVVAVSD 214 (246)
T ss_dssp HHHHHHHHCCS-TT-EEEEEE
T ss_pred HHHHHHHHhhCCCCcEEEEec
Confidence 77778899999434 555533
No 295
>PF04445 SAM_MT: Putative SAM-dependent methyltransferase; InterPro: IPR007536 This family of proteins is functionally uncharacterised.; PDB: 2PGX_A 2OYR_A 2R6Z_A 2PKW_A.
Probab=83.58 E-value=5.9 Score=43.31 Aligned_cols=109 Identities=13% Similarity=0.085 Sum_probs=56.2
Q ss_pred cCCchhHHHHHHH-------HHHHhhcCCC--CEEEEEcCccchHHHHHhcCCCCCceEEEEeCChHHHHHHHHHHhhhh
Q 002218 692 LFSPPLSKQRVEY-------ALQHIKESCA--TTLVDFGCGSGSLLDSLLDYPTALEKIVGVDISQKSLSRAAKIIHSKL 762 (952)
Q Consensus 692 ~F~PPL~~QR~ef-------VldlL~~~k~--krVLDIGCGeG~ll~~LAr~g~~~~qVVGVDISeemLe~ArkrLsa~l 762 (952)
.|.++....|... +.+.+...++ .+|||.=+|-|.-+..++..| ++|+|++-|+-+-...+.-+....
T Consensus 45 DF~~g~~~~R~~~~~g~~~~l~kA~Glk~~~~~~VLDaTaGLG~Da~vlA~~G---~~V~~lErspvia~Ll~dGL~r~~ 121 (234)
T PF04445_consen 45 DFHPGAAAYRRKHGGGKGDPLAKAVGLKPGMRPSVLDATAGLGRDAFVLASLG---CKVTGLERSPVIAALLKDGLKRAQ 121 (234)
T ss_dssp -SSSHHHHHHHHHSSGGGSHHHHHTT-BTTB---EEETT-TTSHHHHHHHHHT-----EEEEE--HHHHHHHHHHHHHHH
T ss_pred EcCCcHHHHHHhhcCCCccHHHHHhCCCCCCCCEEEECCCcchHHHHHHHccC---CeEEEEECCHHHHHHHHHHHHHHH
Confidence 3556555555433 4444443333 489999999999999888777 799999999865444332222111
Q ss_pred hcccccCCCCCCCccEEEEEcCcccc-CCCCCCccEEEEcccccc
Q 002218 763 SKKLDAAVPCTDVKSAVLFDGSITVF-DSRLHGFDIGTCLEVIEH 806 (952)
Q Consensus 763 a~~~~~l~Pr~~~~nVtf~qGDa~dL-pf~d~sFDVVVcieVIEH 806 (952)
..... . ..-..+++++++|..++ ...+.+||+|+.-=++.|
T Consensus 122 ~~~~~-~--~~~~~ri~l~~~d~~~~L~~~~~s~DVVY~DPMFp~ 163 (234)
T PF04445_consen 122 QDPEL-L--AEAMRRIQLIHGDALEYLRQPDNSFDVVYFDPMFPE 163 (234)
T ss_dssp HSTTT-H--HHHHHHEEEEES-CCCHCCCHSS--SEEEE--S---
T ss_pred hCcHh-H--HHHHhCCEEEcCCHHHHHhhcCCCCCEEEECCCCCC
Confidence 11000 0 00124899999998774 445689999998555544
No 296
>PF06859 Bin3: Bicoid-interacting protein 3 (Bin3); InterPro: IPR010675 This entry represents a conserved region of approximately 120 residues within eukaryotic Bicoid-interacting protein 3 (Bin3). Bin3, which shows similarity to a number of protein methyltransferases that modify RNA-binding proteins, interacts with Bicoid, which itself directs pattern formation in the early Drosophila embryo. The interaction might allow Bicoid to switch between its dual roles in transcription and translation []. Note that proteins of the entry contain a conserved HLN motif.; GO: 0008168 methyltransferase activity; PDB: 3G07_B.
Probab=83.45 E-value=0.55 Score=45.76 Aligned_cols=105 Identities=23% Similarity=0.376 Sum_probs=45.0
Q ss_pred CccEEEEccccccCC----hhHHHHHHHHHHHccCCCEEEEEecCCchhHHHHhhccCccCCCCcchhhhccccccCCCC
Q 002218 794 GFDIGTCLEVIEHME----EDEASQFGNIVLSSFRPRILIVSTPNYEYNAILQKSSSTIQEDDPDEKTQLQSCKFRNHDH 869 (952)
Q Consensus 794 sFDVVVcieVIEHL~----dD~l~~L~eeI~RvLKPG~LIISTPN~efN~lf~~L~~~ta~eYPde~~g~~~~~fRh~DH 869 (952)
.||+|+|..|.-++- ++-+..|.+.+++.|+||.++|-.|.. +..+-.+- .. ....+..-.
T Consensus 1 ~yDvilclSVtkWIHLn~GD~Gl~~~f~~~~~~L~pGG~lilEpQ~-w~sY~~~~------~~--------~~~~~~n~~ 65 (110)
T PF06859_consen 1 QYDVILCLSVTKWIHLNWGDEGLKRFFRRIYSLLRPGGILILEPQP-WKSYKKAK------RL--------SEEIRENYK 65 (110)
T ss_dssp -EEEEEEES-HHHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEE----HHHHHTTT------TS---------HHHHHHHH
T ss_pred CccEEEEEEeeEEEEecCcCHHHHHHHHHHHHhhCCCCEEEEeCCC-cHHHHHHh------hh--------hHHHHhHHh
Confidence 489999998865442 455566777899999999666666653 33332211 00 001111112
Q ss_pred ccccCHHHHHHHHHHHHHHcCcEE-EEEeecCCCCCCCCccceeeeeec
Q 002218 870 KFEWTRDQFNCWATELAARHNYSV-EFSGVGGSGDREPGFASQIAVFRS 917 (952)
Q Consensus 870 kFEWTReEFqsWae~La~q~GYsV-efsGVG~~p~ge~G~aTQIAVFrR 917 (952)
...+.+++|..++.+. +-||.- +..++.. ....||...|-+|+|
T Consensus 66 ~i~lrP~~F~~~L~~~--evGF~~~e~~~~~~--~~~~gF~RpI~lf~K 110 (110)
T PF06859_consen 66 SIKLRPDQFEDYLLEP--EVGFSSVEELGVPE--NSSKGFDRPIYLFRK 110 (110)
T ss_dssp H----GGGHHHHHTST--TT---EEEEE---------------EEEEE-
T ss_pred ceEEChHHHHHHHHhc--ccceEEEEEcccCC--CCCCCCCCcEEEEeC
Confidence 2347888888654321 246643 4444432 235688778888765
No 297
>cd08034 LARP_1_2 La RNA-binding domain proteins similar to La-related proteins 1 and 2. This domain is found in proteins similar to vertebrate La-related proteins 1 and 2 (LARP1, LARP2). A variety of La-related proteins (LARPs or La ribonucleoproteins), with differing domain architecture, appear to function as RNA-binding proteins in eukaryotic cellular processes.
Probab=83.40 E-value=0.5 Score=42.89 Aligned_cols=72 Identities=19% Similarity=0.263 Sum_probs=54.1
Q ss_pred HHHHHHHhhhhcccccccCCCchhhhHHhhhhcCcccccccceEEEeecccccccccccCcccccchHHHHHHHHHHhhc
Q 002218 108 DKLIASVKHLFSNEFLSSQSPLRGHFIAALRRDGDLYGSVPASVIAVCDSKLANLCKLINPKVESSHLLVLTYIMRAATR 187 (952)
Q Consensus 108 ~~l~~~~~~~f~~e~~~~~~pl~~h~~~~~~r~g~~~g~~p~~~~~~~d~k~~~~ck~~~~~~e~~p~~~~~~~~~a~~~ 187 (952)
|.|+..|.|-|||+=|..+.=|..|+ +. =|-||+++||.+. |+-++.. | ..+|.+|.+.
T Consensus 2 ~~i~~QvEfYFSd~NL~~D~fLr~~m------~~--~G~Vpl~~i~~F~-rmk~l~~--------d----~~~i~~Al~~ 60 (73)
T cd08034 2 EYIKKQIEYYFSVDNLEKDFFLRRKM------DP--EGYLPIALIASFH-RVQALTT--------D----VNLILEALKD 60 (73)
T ss_pred hHHHhhHHhhcCHhhhccCHHHHHHc------CC--CCCEeHHHHhccH-HHHHHcC--------C----HHHHHHHHHc
Confidence 57899999999999999888777776 22 3889999999986 5555432 2 4577888777
Q ss_pred cCCcEEeecCceeeee
Q 002218 188 LSEFVVTSEGQLSIWR 203 (952)
Q Consensus 188 ~~~~~~~s~~~~~~~~ 203 (952)
++- |.+++. +|||
T Consensus 61 S~~-lev~e~--kvR~ 73 (73)
T cd08034 61 STV-VELVDE--KVRC 73 (73)
T ss_pred CCe-EEEecC--eecC
Confidence 654 888884 6654
No 298
>cd08029 LA_like_fungal La-motif domain of fungal proteins similar to the La autoantigen. This domain is found in fungal proteins related to the La autoantigen. A variety of La-related proteins (LARPs or La ribonucleoproteins), with differing domain architecture, appear to function as RNA-binding proteins in eukaryotic cellular processes.
Probab=83.33 E-value=0.65 Score=42.37 Aligned_cols=75 Identities=20% Similarity=0.267 Sum_probs=56.6
Q ss_pred HHHHHHHhhhhcccccccCCCchhhhHHhhhhcCcccccccceEEEeecccccccccccCcccccchHHHHHHHHHHhhc
Q 002218 108 DKLIASVKHLFSNEFLSSQSPLRGHFIAALRRDGDLYGSVPASVIAVCDSKLANLCKLINPKVESSHLLVLTYIMRAATR 187 (952)
Q Consensus 108 ~~l~~~~~~~f~~e~~~~~~pl~~h~~~~~~r~g~~~g~~p~~~~~~~d~k~~~~ck~~~~~~e~~p~~~~~~~~~a~~~ 187 (952)
+.|+..|.|-|||+=|..+.=|..| +..+.| |.||+++|+.+. |+-+++. ...|.+|.+.
T Consensus 2 ~~I~~QvEfYFSd~NL~~D~fLr~~----~~~~~~--G~Vpl~~i~~F~-rmk~l~~-------------~~~i~~Al~~ 61 (76)
T cd08029 2 EEIRKQVEFYFSDSNLPTDKFLWTL----TGGSNN--GWVPIKTIASFK-RMRRFQP-------------LEAVVEALRE 61 (76)
T ss_pred hHHHhhHHhhcCHhhhccCHHHHHH----hccCCC--CcEehHHHhCch-HHHHcCC-------------HHHHHHHHHh
Confidence 5789999999999988888655444 444444 889999999985 5555541 1788888888
Q ss_pred cCCcEEeecCceeeee
Q 002218 188 LSEFVVTSEGQLSIWR 203 (952)
Q Consensus 188 ~~~~~~~s~~~~~~~~ 203 (952)
++ .|.+++++--|+|
T Consensus 62 S~-~lev~~d~~~VRR 76 (76)
T cd08029 62 SE-LLEVSEDGENVRR 76 (76)
T ss_pred CC-eEEEeCCCCcccC
Confidence 76 4889998877765
No 299
>KOG1122 consensus tRNA and rRNA cytosine-C5-methylase (nucleolar protein NOL1/NOP2) [RNA processing and modification]
Probab=83.06 E-value=4.1 Score=47.92 Aligned_cols=114 Identities=14% Similarity=0.170 Sum_probs=77.2
Q ss_pred HhhcCCCCEEEEEcCccchHHHHHhcCCCCCceEEEEeCChHHHHHHHHHHhhhhhcccccCCCCCCCccEEEEEcCccc
Q 002218 708 HIKESCATTLVDFGCGSGSLLDSLLDYPTALEKIVGVDISQKSLSRAAKIIHSKLSKKLDAAVPCTDVKSAVLFDGSITV 787 (952)
Q Consensus 708 lL~~~k~krVLDIGCGeG~ll~~LAr~g~~~~qVVGVDISeemLe~ArkrLsa~la~~~~~l~Pr~~~~nVtf~qGDa~d 787 (952)
.+.+.++.+|||..+..|.=+.++|..-.....|++.|.+..-+...+.+++. -+..+......|..+
T Consensus 236 aL~Pq~gERIlDmcAAPGGKTt~IAalMkn~G~I~AnD~n~~r~~~l~~n~~r------------lGv~ntiv~n~D~~e 303 (460)
T KOG1122|consen 236 ALDPQPGERILDMCAAPGGKTTHIAALMKNTGVIFANDSNENRLKSLKANLHR------------LGVTNTIVSNYDGRE 303 (460)
T ss_pred ecCCCCCCeecchhcCCCchHHHHHHHHcCCceEEecccchHHHHHHHHHHHH------------hCCCceEEEccCccc
Confidence 34667889999999998887776664332236899999999999888877763 355567777778877
Q ss_pred cCCC--CCCccEEE----Ecc--cccc---------------CChhHHHHHHHHHHHccCCC-EEEEEecC
Q 002218 788 FDSR--LHGFDIGT----CLE--VIEH---------------MEEDEASQFGNIVLSSFRPR-ILIVSTPN 834 (952)
Q Consensus 788 Lpf~--d~sFDVVV----cie--VIEH---------------L~dD~l~~L~eeI~RvLKPG-~LIISTPN 834 (952)
++.. .++||-|+ |++ |+.- +..=+.+.| .....+++|| +++-+|-.
T Consensus 304 f~~~~~~~~fDRVLLDAPCSGtgvi~K~~~vkt~k~~~di~~~~~LQr~Ll-lsAi~lv~~GGvLVYSTCS 373 (460)
T KOG1122|consen 304 FPEKEFPGSFDRVLLDAPCSGTGVISKDQSVKTNKTVKDILRYAHLQRELL-LSAIDLVKAGGVLVYSTCS 373 (460)
T ss_pred ccccccCcccceeeecCCCCCCcccccccccccchhHHHHHHhHHHHHHHH-HHHHhhccCCcEEEEEeee
Confidence 6521 23799988 344 3311 111223344 4588999999 77777753
No 300
>cd08033 LARP_6 La RNA-binding domain of La-related protein 6. This domain is found in animal and plant proteins related to the La autoantigen. A variety of La-related proteins (LARPs or La ribonucleoproteins), with differing domain architecture, appear to function as RNA-binding proteins in eukaryotic cellular processes.
Probab=82.30 E-value=0.57 Score=42.91 Aligned_cols=76 Identities=32% Similarity=0.432 Sum_probs=57.1
Q ss_pred HHHHHHHhhhhcccccccCCCchhhhHHhhhhcCcccccccceEEEeecccccccccccCcccccchHHHHHHHHHHhhc
Q 002218 108 DKLIASVKHLFSNEFLSSQSPLRGHFIAALRRDGDLYGSVPASVIAVCDSKLANLCKLINPKVESSHLLVLTYIMRAATR 187 (952)
Q Consensus 108 ~~l~~~~~~~f~~e~~~~~~pl~~h~~~~~~r~g~~~g~~p~~~~~~~d~k~~~~ck~~~~~~e~~p~~~~~~~~~a~~~ 187 (952)
++|+..|.|-|||+=|..+.=|..|+ +.+.| |.||+++||.+- |+-++++ | ..+|..|.+.
T Consensus 2 ~~i~~QvEfYFSd~NL~~D~fL~~~~----~~~~d--G~Vpl~~i~~F~-rmk~l~~--------d----~~~I~~Al~~ 62 (77)
T cd08033 2 QKIVKQVEYYFSDENLLKDAFLLKHV----RRNKE--GYVPIKLIASFK-KVKALTR--------D----WRVVAAALRR 62 (77)
T ss_pred hHHHhHHHhhcCHhhhccCHHHHHHh----ccCCC--CcEehHHHhcch-HHHHHcC--------C----HHHHHHHHHh
Confidence 57899999999999888876555444 33444 899999999984 5666654 1 2688889888
Q ss_pred cCCcEEeecCceeeee
Q 002218 188 LSEFVVTSEGQLSIWR 203 (952)
Q Consensus 188 ~~~~~~~s~~~~~~~~ 203 (952)
+.- |.+++++--|+|
T Consensus 63 S~~-lev~~d~~~VRR 77 (77)
T cd08033 63 SSK-LVVSEDGKKVRR 77 (77)
T ss_pred CCe-EEEcCCCCccCC
Confidence 764 889988776665
No 301
>COG1889 NOP1 Fibrillarin-like rRNA methylase [Translation, ribosomal structure and biogenesis]
Probab=82.26 E-value=8.3 Score=41.78 Aligned_cols=102 Identities=9% Similarity=0.111 Sum_probs=71.4
Q ss_pred CCCCEEEEEcCccchHHHHHhcCCCCCceEEEEeCChHHHHHHHHHHhhhhhcccccCCCCCCCccEEEEEcCccccC--
Q 002218 712 SCATTLVDFGCGSGSLLDSLLDYPTALEKIVGVDISQKSLSRAAKIIHSKLSKKLDAAVPCTDVKSAVLFDGSITVFD-- 789 (952)
Q Consensus 712 ~k~krVLDIGCGeG~ll~~LAr~g~~~~qVVGVDISeemLe~ArkrLsa~la~~~~~l~Pr~~~~nVtf~qGDa~dLp-- 789 (952)
.++.+||=+|..+|....+++.-.+ ...++||+.|+.+...--.... .-+|+--+.+|+....
T Consensus 75 ~~g~~VLYLGAasGTTvSHVSDIv~-~G~iYaVEfs~R~~reLl~~a~--------------~R~Ni~PIL~DA~~P~~Y 139 (231)
T COG1889 75 KEGSKVLYLGAASGTTVSHVSDIVG-EGRIYAVEFSPRPMRELLDVAE--------------KRPNIIPILEDARKPEKY 139 (231)
T ss_pred CCCCEEEEeeccCCCcHhHHHhccC-CCcEEEEEecchhHHHHHHHHH--------------hCCCceeeecccCCcHHh
Confidence 4678999999999999999988763 5789999999976544332211 1136666777876432
Q ss_pred -CCCCCccEEEEccccccCChhHHHHHHHHHHHccCCC-EEEEEe
Q 002218 790 -SRLHGFDIGTCLEVIEHMEEDEASQFGNIVLSSFRPR-ILIVST 832 (952)
Q Consensus 790 -f~d~sFDVVVcieVIEHL~dD~l~~L~eeI~RvLKPG-~LIIST 832 (952)
.--...|+|+.-- -.+++.+.+..++..+||+| .+++..
T Consensus 140 ~~~Ve~VDviy~DV----AQp~Qa~I~~~Na~~FLk~~G~~~i~i 180 (231)
T COG1889 140 RHLVEKVDVIYQDV----AQPNQAEILADNAEFFLKKGGYVVIAI 180 (231)
T ss_pred hhhcccccEEEEec----CCchHHHHHHHHHHHhcccCCeEEEEE
Confidence 1235688886532 24578888889999999998 555543
No 302
>PRK10737 FKBP-type peptidyl-prolyl cis-trans isomerase; Provisional
Probab=81.99 E-value=2 Score=45.67 Aligned_cols=60 Identities=17% Similarity=0.350 Sum_probs=50.9
Q ss_pred CCCceeEEEEEEEEeecccchhhhhccc---cceEEEeccCccchhhhhhhhhccccccceecccCCchh
Q 002218 582 SNGCLSFISYSVSLVIEGETMKELLESR---EEFEFEMGTGAVIPQVEVVTAQMSVGQSACFCKELPPQE 648 (952)
Q Consensus 582 ~~gs~~~i~y~~~l~~~~~~~~~~~e~~---~~~~fe~g~~a~~~~l~~v~~q~sv~q~~~~~~~l~~~~ 648 (952)
.+|++|.|.|++.+. +| +++++. .-++|.+|.+...+-||..+.-|.+|+...|. ++|.+
T Consensus 4 ~~~~vV~l~Y~l~~~-dG----~v~dst~~~~Pl~~~~G~g~lipglE~aL~G~~~Gd~~~v~--l~pee 66 (196)
T PRK10737 4 AKDLVVSLAYQVRTE-DG----VLVDESPVSAPLDYLHGHGSLISGLETALEGHEVGDKFDVA--VGAND 66 (196)
T ss_pred CCCCEEEEEEEEEeC-CC----CEEEecCCCCCeEEEeCCCcchHHHHHHHcCCCCCCEEEEE--EChHH
Confidence 688999999999994 34 367776 56899999999999999999999999998876 65554
No 303
>KOG1501 consensus Arginine N-methyltransferase [General function prediction only]
Probab=81.74 E-value=2.7 Score=49.62 Aligned_cols=99 Identities=14% Similarity=0.118 Sum_probs=63.6
Q ss_pred CEEEEEcCccchHHHHHhcCCCCCceEEEEeCChHHHHHHHHHHhhhhhcccccCCCCCCCccEEEEEcCccccCCC-CC
Q 002218 715 TTLVDFGCGSGSLLDSLLDYPTALEKIVGVDISQKSLSRAAKIIHSKLSKKLDAAVPCTDVKSAVLFDGSITVFDSR-LH 793 (952)
Q Consensus 715 krVLDIGCGeG~ll~~LAr~g~~~~qVVGVDISeemLe~ArkrLsa~la~~~~~l~Pr~~~~nVtf~qGDa~dLpf~-d~ 793 (952)
..|||||.|+|.++...++.|+ ..|++++.=..|.+.|++..+. .+..++|+++.---.+.... ..
T Consensus 68 v~vLdigtGTGLLSmMAvraga--D~vtA~EvfkPM~d~arkI~~k-----------ng~SdkI~vInkrStev~vg~~~ 134 (636)
T KOG1501|consen 68 VFVLDIGTGTGLLSMMAVRAGA--DSVTACEVFKPMVDLARKIMHK-----------NGMSDKINVINKRSTEVKVGGSS 134 (636)
T ss_pred EEEEEccCCccHHHHHHHHhcC--CeEEeehhhchHHHHHHHHHhc-----------CCCccceeeeccccceeeecCcc
Confidence 3689999999999988888875 6799999999999999987653 23345677765444443322 12
Q ss_pred CccEEEEcccc-ccCChhHHHHHHHHHHHccCCC
Q 002218 794 GFDIGTCLEVI-EHMEEDEASQFGNIVLSSFRPR 826 (952)
Q Consensus 794 sFDVVVcieVI-EHL~dD~l~~L~eeI~RvLKPG 826 (952)
.-|+++.-.+. |-+.+..+..|.....++++|+
T Consensus 135 RadI~v~e~fdtEligeGalps~qhAh~~L~~~n 168 (636)
T KOG1501|consen 135 RADIAVREDFDTELIGEGALPSLQHAHDMLLVDN 168 (636)
T ss_pred hhhhhhHhhhhhhhhccccchhHHHHHHHhcccC
Confidence 35555443222 2222223445555556677776
No 304
>cd08038 LARP_2 La RNA-binding domain of La-related protein 2. This domain is found in vertebrate La-related protein 2 (LARP2). A variety of La-related proteins (LARPs or La ribonucleoproteins), with differing domain architecture, appear to function as RNA-binding proteins in eukaryotic cellular processes.
Probab=80.99 E-value=0.81 Score=41.63 Aligned_cols=69 Identities=22% Similarity=0.256 Sum_probs=52.2
Q ss_pred HHHHHHHhhhhcccccccCCCchhhhHHhhhhcCcccccccceEEEeecccccccccccCcccccchHHHHHHHHHHhhc
Q 002218 108 DKLIASVKHLFSNEFLSSQSPLRGHFIAALRRDGDLYGSVPASVIAVCDSKLANLCKLINPKVESSHLLVLTYIMRAATR 187 (952)
Q Consensus 108 ~~l~~~~~~~f~~e~~~~~~pl~~h~~~~~~r~g~~~g~~p~~~~~~~d~k~~~~ck~~~~~~e~~p~~~~~~~~~a~~~ 187 (952)
+.+...|.|-|||+=|..+.=|..|+- . =|-||+++||.+ -|+.+ +.+ | +.+|..|.+.
T Consensus 2 e~I~~QvEfYFSd~NL~~D~fLr~~m~------~--~G~Vpl~~ia~F-~rmk~----lt~----d----~~~I~~Al~~ 60 (73)
T cd08038 2 EYIKRQIEYYFSTENLERDFFLRRKMD------L--QGFLPISLIAGF-YRVQA----LTT----N----VDLILEALKD 60 (73)
T ss_pred hHHHhhHHhhcchhhhccCHHHHHHhC------C--CCCEeHHHHhcc-hHHHH----hcC----C----HHHHHHHHHc
Confidence 568899999999999999988887762 2 389999999998 23333 332 2 3678888888
Q ss_pred cCCcEEeecCc
Q 002218 188 LSEFVVTSEGQ 198 (952)
Q Consensus 188 ~~~~~~~s~~~ 198 (952)
++- |-++++.
T Consensus 61 S~~-ve~~~~~ 70 (73)
T cd08038 61 STE-VEIVDQK 70 (73)
T ss_pred CCe-EEEeCCc
Confidence 666 8888874
No 305
>KOG2793 consensus Putative N2,N2-dimethylguanosine tRNA methyltransferase [RNA processing and modification]
Probab=80.13 E-value=10 Score=41.94 Aligned_cols=114 Identities=14% Similarity=0.057 Sum_probs=60.8
Q ss_pred CCCEEEEEcCccchHHHHHhcCCCCCceEEEEeCChHHHHHHHHHHhhhhhcccccCCCCCCCccE-EEEEcCccccCCC
Q 002218 713 CATTLVDFGCGSGSLLDSLLDYPTALEKIVGVDISQKSLSRAAKIIHSKLSKKLDAAVPCTDVKSA-VLFDGSITVFDSR 791 (952)
Q Consensus 713 k~krVLDIGCGeG~ll~~LAr~g~~~~qVVGVDISeemLe~ArkrLsa~la~~~~~l~Pr~~~~nV-tf~qGDa~dLpf~ 791 (952)
+..+||++|.|+|.-+...+.... .+|+--|+..-.......+.... ..+.+.+....+ .+.=++..+..+.
T Consensus 86 ~~~~vlELGsGtglvG~~aa~~~~--~~v~ltD~~~~~~~L~~~~~~~~-----~~l~~~g~~v~v~~L~Wg~~~~~~~~ 158 (248)
T KOG2793|consen 86 KYINVLELGSGTGLVGILAALLLG--AEVVLTDLPKVVENLKFNRDKNN-----IALNQLGGSVIVAILVWGNALDVSFR 158 (248)
T ss_pred cceeEEEecCCccHHHHHHHHHhc--ceeccCCchhhHHHHHHhhhhhh-----hhhhhcCCceeEEEEecCCcccHhhc
Confidence 467899999999977766666443 78888886554332221111110 011111111122 2222333333344
Q ss_pred CCC-ccEEEEccccccCChhHHHHHHHHHHHccCCC-EEEEEecCC
Q 002218 792 LHG-FDIGTCLEVIEHMEEDEASQFGNIVLSSFRPR-ILIVSTPNY 835 (952)
Q Consensus 792 d~s-FDVVVcieVIEHL~dD~l~~L~eeI~RvLKPG-~LIISTPN~ 835 (952)
... ||+|+...++.+-.... -+...+..+|..+ .+++.++-.
T Consensus 159 ~~~~~DlilasDvvy~~~~~e--~Lv~tla~ll~~~~~i~l~~~lr 202 (248)
T KOG2793|consen 159 LPNPFDLILASDVVYEEESFE--GLVKTLAFLLAKDGTIFLAYPLR 202 (248)
T ss_pred cCCcccEEEEeeeeecCCcch--hHHHHHHHHHhcCCeEEEEEecc
Confidence 445 99999999886654222 2223455556555 677777643
No 306
>KOG4589 consensus Cell division protein FtsJ [Cell cycle control, cell division, chromosome partitioning]
Probab=79.79 E-value=1.9 Score=45.95 Aligned_cols=34 Identities=24% Similarity=0.361 Sum_probs=30.1
Q ss_pred CCCEEEEEcCccchHHHHHhcCCCCCceEEEEeC
Q 002218 713 CATTLVDFGCGSGSLLDSLLDYPTALEKIVGVDI 746 (952)
Q Consensus 713 k~krVLDIGCGeG~ll~~LAr~g~~~~qVVGVDI 746 (952)
++.+|||+||..|.++.-..+..++...|.|||+
T Consensus 69 p~~~VlD~G~APGsWsQVavqr~~p~g~v~gVDl 102 (232)
T KOG4589|consen 69 PEDTVLDCGAAPGSWSQVAVQRVNPNGMVLGVDL 102 (232)
T ss_pred CCCEEEEccCCCChHHHHHHHhhCCCceEEEEee
Confidence 6789999999999999877777667889999996
No 307
>COG3315 O-Methyltransferase involved in polyketide biosynthesis [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=79.65 E-value=14 Score=41.50 Aligned_cols=125 Identities=14% Similarity=0.123 Sum_probs=84.3
Q ss_pred hHHHHHHHHHHHhhc---CCCCEEEEEcCccchHHHHHhcCCCCCceEEEEeCChHHHHHHHHHHhhhhhcccccCCCCC
Q 002218 697 LSKQRVEYALQHIKE---SCATTLVDFGCGSGSLLDSLLDYPTALEKIVGVDISQKSLSRAAKIIHSKLSKKLDAAVPCT 773 (952)
Q Consensus 697 L~~QR~efVldlL~~---~k~krVLDIGCGeG~ll~~LAr~g~~~~qVVGVDISeemLe~ArkrLsa~la~~~~~l~Pr~ 773 (952)
..-.|..++-+.+.. .....|+-+|||-=.-...+-.- ...+|+-||. ++.++.-++.+..... .
T Consensus 73 ~~a~Rtr~fD~~~~~~~~~g~~qvViLgaGLDTRayRl~~~--~~~~vfEvD~-Pevi~~K~~~l~e~~~---------~ 140 (297)
T COG3315 73 FLAARTRYFDDFVRAALDAGIRQVVILGAGLDTRAYRLDWP--KGTRVFEVDL-PEVIEFKKKLLAERGA---------T 140 (297)
T ss_pred hHHHHHHHHHHHHHHHHHhcccEEEEeccccccceeecCCC--CCCeEEECCC-cHHHHHHHHHhhhcCC---------C
Confidence 355566665554432 12689999999966655544332 2367888884 6777776666543210 1
Q ss_pred CCccEEEEEcCccccCC----CCCCcc-----EEEEccccccCChhHHHHHHHHHHHccCCC-EEEEEec
Q 002218 774 DVKSAVLFDGSITVFDS----RLHGFD-----IGTCLEVIEHMEEDEASQFGNIVLSSFRPR-ILIVSTP 833 (952)
Q Consensus 774 ~~~nVtf~qGDa~dLpf----~d~sFD-----VVVcieVIEHL~dD~l~~L~eeI~RvLKPG-~LIISTP 833 (952)
.+...+++..|+.+-+. ...+|| ++++-+++.+++++....|.+.|...+.|| .++...+
T Consensus 141 ~~~~~~~Va~Dl~~~dw~~~L~~~G~d~~~pt~~iaEGLl~YL~~~~v~~ll~~I~~~~~~gS~~~~~~~ 210 (297)
T COG3315 141 PPAHRRLVAVDLREDDWPQALAAAGFDRSRPTLWIAEGLLMYLPEEAVDRLLSRIAALSAPGSRVAFDYS 210 (297)
T ss_pred CCceEEEEeccccccchHHHHHhcCCCcCCCeEEEeccccccCCHHHHHHHHHHHHHhCCCCceEEEecc
Confidence 12268899999985432 223454 788889999999999999999999999999 6666654
No 308
>PF02254 TrkA_N: TrkA-N domain; InterPro: IPR003148 The regulator of K+ conductance (RCK) domain is found in many ligand-gated K+ channels, most often attached to the intracellular carboxy terminus. The domain is prevalent among prokaryotic K+ channels, and also found in eukaryotic, high-conductance Ca2+-activated K+ channels (BK channels) [, , ]. Largely involved in redox-linked regulation of potassium channels, the N-terminal part of the RCK domain is predicted to be an active dehydrogenase at least in some cases []. Some have a conserved sequence motif (G-x-G-x-x-G-x(n)-[DE]) for NAD+ binding [], but others do not, reflecting the diversity of ligands for RCK domains. The C-terminal part is less conserved, being absent in some channels, such as the kefC antiporter from Escherichia coli. It is predicted to bind unidentified ligands and to regulate sulphate, sodium and other transporters. The X-ray structure of several RCK domains has been solved [, , ]. It reveals an alpha-beta fold similar to dehydrogenase enzymes. The domain forms a homodimer, producing a cleft between two lobes. It has a composite structure, with an N-terminal (RCK-N), and a C-terminal (RCK-C) subdomain. The RCK-N subdomain forms a Rossmann fold with two alpha helices on one side of a six stranded parallel beta sheet and three alpha helices on the other side. The RCK-C subdomain is an all-beta-strand fold. It forms an extention of the dimer interface and further stabilises the RCK homodimer [, , ]. Ca2+ is a ligand that opens the channel in a concentration-dependent manner. Two Ca2+ ions are located at the base of a cleft between two RCK domains, coordinated by the carboxylate groups of two glutamate residues, and by an aspartate residue [, , ]. RCK domains occur in at least five different contexts: As a single domain on the C terminus of some K+ channels (for example, many prokaryotic K+ channels). As two tandem RCK domains on the C terminus of some transporters that form gating rings (for example, eukaryotic BK channels). The gating ring has an arrangement of eight identical RCK domains, one from each of the four pore-forming subunits and four from the intracellular solution. As two domains, one at the N terminus and another at the C terminus of transporter (for example, the prokaryotic trk system potassium uptake protein A). As a soluble protein (not part of a K+ channel) consisting of two tandem RCK domains. As a soluble protein consisting of a single RCK domain. This entry represents the N-terminal subdomain of RCK.; GO: 0006813 potassium ion transport; PDB: 3L4B_E 1LSS_C 3LLV_A 2FY8_D 2AEF_A 1LNQ_E 3RBX_C 3KXD_A 2AEJ_A 3RBZ_A ....
Probab=78.59 E-value=4.7 Score=37.56 Aligned_cols=95 Identities=15% Similarity=0.178 Sum_probs=59.9
Q ss_pred CccchHHHHHh----cCCCCCceEEEEeCChHHHHHHHHHHhhhhhcccccCCCCCCCccEEEEEcCccccCC----CCC
Q 002218 722 CGSGSLLDSLL----DYPTALEKIVGVDISQKSLSRAAKIIHSKLSKKLDAAVPCTDVKSAVLFDGSITVFDS----RLH 793 (952)
Q Consensus 722 CGeG~ll~~LA----r~g~~~~qVVGVDISeemLe~ArkrLsa~la~~~~~l~Pr~~~~nVtf~qGDa~dLpf----~d~ 793 (952)
||.|.++..++ +.+ .+|+.+|.+++.++.+++. .+.++.||..+... ...
T Consensus 4 ~G~g~~~~~i~~~L~~~~---~~vvvid~d~~~~~~~~~~-------------------~~~~i~gd~~~~~~l~~a~i~ 61 (116)
T PF02254_consen 4 IGYGRIGREIAEQLKEGG---IDVVVIDRDPERVEELREE-------------------GVEVIYGDATDPEVLERAGIE 61 (116)
T ss_dssp ES-SHHHHHHHHHHHHTT---SEEEEEESSHHHHHHHHHT-------------------TSEEEES-TTSHHHHHHTTGG
T ss_pred EcCCHHHHHHHHHHHhCC---CEEEEEECCcHHHHHHHhc-------------------ccccccccchhhhHHhhcCcc
Confidence 45556665444 422 5899999999998888542 25688899987542 335
Q ss_pred CccEEEEccccccCChhHHHHHHHHHHHccCCC-EEEEEecCCchhHHHHh
Q 002218 794 GFDIGTCLEVIEHMEEDEASQFGNIVLSSFRPR-ILIVSTPNYEYNAILQK 843 (952)
Q Consensus 794 sFDVVVcieVIEHL~dD~l~~L~eeI~RvLKPG-~LIISTPN~efN~lf~~ 843 (952)
..|.|++..- ++......-...+-+.|. .++.-..+.++...+..
T Consensus 62 ~a~~vv~~~~-----~d~~n~~~~~~~r~~~~~~~ii~~~~~~~~~~~l~~ 107 (116)
T PF02254_consen 62 KADAVVILTD-----DDEENLLIALLARELNPDIRIIARVNDPENAELLRQ 107 (116)
T ss_dssp CESEEEEESS-----SHHHHHHHHHHHHHHTTTSEEEEEESSHHHHHHHHH
T ss_pred ccCEEEEccC-----CHHHHHHHHHHHHHHCCCCeEEEEECCHHHHHHHHH
Confidence 6787776432 344444333466667777 77777777666666654
No 309
>PHA01634 hypothetical protein
Probab=77.74 E-value=10 Score=38.56 Aligned_cols=46 Identities=15% Similarity=0.065 Sum_probs=40.2
Q ss_pred CCCCEEEEEcCccchHHHHHhcCCCCCceEEEEeCChHHHHHHHHHHh
Q 002218 712 SCATTLVDFGCGSGSLLDSLLDYPTALEKIVGVDISQKSLSRAAKIIH 759 (952)
Q Consensus 712 ~k~krVLDIGCGeG~ll~~LAr~g~~~~qVVGVDISeemLe~ArkrLs 759 (952)
.++++|+|||.+-|.-+.+++-.|. ..|+++++++...+..++.+.
T Consensus 27 vk~KtV~dIGA~iGdSaiYF~l~GA--K~Vva~E~~~kl~k~~een~k 72 (156)
T PHA01634 27 VYQRTIQIVGADCGSSALYFLLRGA--SFVVQYEKEEKLRKKWEEVCA 72 (156)
T ss_pred ecCCEEEEecCCccchhhHHhhcCc--cEEEEeccCHHHHHHHHHHhh
Confidence 3789999999999999998888885 789999999999999877653
No 310
>PF00035 dsrm: Double-stranded RNA binding motif; InterPro: IPR001159 The DsRBD domain is found in a variety of RNA-binding proteins with different structures and exhibiting a diversity of functions []. It is involved in localisation of at least five different mRNAs in the early Drosophila embryo and by interferon-induced protein kinase in humans, which is part of the cellular response to dsRNA.; GO: 0003725 double-stranded RNA binding, 0005622 intracellular; PDB: 1EKZ_A 1STU_A 1QU6_A 2L2M_A 3ADJ_A 1WHN_A 3LLH_B 2B7V_A 2L3J_A 1UHZ_A ....
Probab=77.52 E-value=3.1 Score=35.09 Aligned_cols=67 Identities=19% Similarity=0.265 Sum_probs=40.1
Q ss_pred hhhHHHhhhhhcccCcceeccccCCccccccchhhhhhhhhcccccccccccCCCcccCCCceeEEEEEeeccCCccccc
Q 002218 395 PREMLFMFCRQHWLSEPVFSTCSNSLKESSESSRFYEKSAALESAETGKECTSGGGTAASDNVRCEVKIFSKSRDPILEC 474 (952)
Q Consensus 395 pr~~l~~fc~~~~l~ep~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~c~v~~~s~~~~~~~~~ 474 (952)
|+.+|..+|+++++.-|..... ..+ +.....-|.|.|+|. + ..+-
T Consensus 1 ~~~~L~e~~~~~~~~~~~~~~~-----------------------------~~~-~~~~~~~f~~~~~i~--~--~~~~- 45 (67)
T PF00035_consen 1 PKSRLNEYCQKNKFPPPYYYIE-----------------------------EEG-PSHHRPRFICTVYID--G--KEYG- 45 (67)
T ss_dssp HHHHHHHHHHHCTSSEEEEEEE-----------------------------EES-SSSSSEEEEEEEEET--T--EEEE-
T ss_pred CHHHHHHHHHHcCCCCCEEEEE-----------------------------EeC-CCCCCceEEEEEEEC--C--EEEe-
Confidence 7889999999999443333222 011 111112599999882 2 1111
Q ss_pred CchhhhhhhhhhHhhhhhHHHHHH
Q 002218 475 SPKEFYKKQNESIENASLKVLSWL 498 (952)
Q Consensus 475 ~~~~~~~~~~dai~~a~l~~l~~~ 498 (952)
...-.+--+|=|.||.++|..|
T Consensus 46 --~g~g~sKk~Ak~~AA~~al~~L 67 (67)
T PF00035_consen 46 --EGEGSSKKEAKQQAAKKALQKL 67 (67)
T ss_dssp --EEEESSHHHHHHHHHHHHHHHH
T ss_pred --EeccCCHHHHHHHHHHHHHHhC
Confidence 1222355789999999999876
No 311
>KOG2651 consensus rRNA adenine N-6-methyltransferase [RNA processing and modification]
Probab=77.38 E-value=5.7 Score=46.31 Aligned_cols=45 Identities=24% Similarity=0.237 Sum_probs=37.1
Q ss_pred hcCCCCEEEEEcCccchHHHHHhcCCCCCceEEEEeCChHHHHHHHH
Q 002218 710 KESCATTLVDFGCGSGSLLDSLLDYPTALEKIVGVDISQKSLSRAAK 756 (952)
Q Consensus 710 ~~~k~krVLDIGCGeG~ll~~LAr~g~~~~qVVGVDISeemLe~Ark 756 (952)
...+...|+|+|.|.|++++.|+-..+ ..|+|||=|....++|++
T Consensus 150 ~f~gi~~vvD~GaG~G~LSr~lSl~y~--lsV~aIegsq~~~~ra~r 194 (476)
T KOG2651|consen 150 DFTGIDQVVDVGAGQGHLSRFLSLGYG--LSVKAIEGSQRLVERAQR 194 (476)
T ss_pred hhcCCCeeEEcCCCchHHHHHHhhccC--ceEEEeccchHHHHHHHH
Confidence 334668999999999999999986543 899999999888877763
No 312
>PF01861 DUF43: Protein of unknown function DUF43; InterPro: IPR002723 This family of prokaryotic proteins have not been characterised. All the members are 350-400 amino acids long.; PDB: 2QM3_A.
Probab=77.23 E-value=16 Score=40.36 Aligned_cols=117 Identities=12% Similarity=0.110 Sum_probs=64.0
Q ss_pred hhhhhcCCchhHHHHHHHHHHHhhcCCCCEEEEEcCccchH-HHHHhcCCCCCceEEEEeCChHHHHHHHHHHhhhhhcc
Q 002218 687 RMEQALFSPPLSKQRVEYALQHIKESCATTLVDFGCGSGSL-LDSLLDYPTALEKIVGVDISQKSLSRAAKIIHSKLSKK 765 (952)
Q Consensus 687 Rye~~~F~PPL~~QR~efVldlL~~~k~krVLDIGCGeG~l-l~~LAr~g~~~~qVVGVDISeemLe~ArkrLsa~la~~ 765 (952)
.+.+..-.|...-.|..++.+. ....+++||-+|=..-.- +..|...+ .+|+-+||++..|+.-++....
T Consensus 19 ~~DQ~~~T~eT~~~Ra~~~~~~-gdL~gk~il~lGDDDLtSlA~al~~~~---~~I~VvDiDeRll~fI~~~a~~----- 89 (243)
T PF01861_consen 19 ELDQGYATPETTLRRAALMAER-GDLEGKRILFLGDDDLTSLALALTGLP---KRITVVDIDERLLDFINRVAEE----- 89 (243)
T ss_dssp GGT---B-HHHHHHHHHHHHHT-T-STT-EEEEES-TT-HHHHHHHHT-----SEEEEE-S-HHHHHHHHHHHHH-----
T ss_pred ccccccccHHHHHHHHHHHHhc-CcccCCEEEEEcCCcHHHHHHHhhCCC---CeEEEEEcCHHHHHHHHHHHHH-----
Confidence 3455555566666777777665 334689999999554332 23333333 7999999999999988765432
Q ss_pred cccCCCCCCCccEEEEEcCcccc-CCC-CCCccEEEEc--cccccCChhHHHHHHHHHHHccCC
Q 002218 766 LDAAVPCTDVKSAVLFDGSITVF-DSR-LHGFDIGTCL--EVIEHMEEDEASQFGNIVLSSFRP 825 (952)
Q Consensus 766 ~~~l~Pr~~~~nVtf~qGDa~dL-pf~-d~sFDVVVci--eVIEHL~dD~l~~L~eeI~RvLKP 825 (952)
.+. +|+.++.|+.+. |.. .++||++++- +.+ +-+.+|...-...||.
T Consensus 90 -------~gl-~i~~~~~DlR~~LP~~~~~~fD~f~TDPPyT~-----~G~~LFlsRgi~~Lk~ 140 (243)
T PF01861_consen 90 -------EGL-PIEAVHYDLRDPLPEELRGKFDVFFTDPPYTP-----EGLKLFLSRGIEALKG 140 (243)
T ss_dssp -------HT---EEEE---TTS---TTTSS-BSEEEE---SSH-----HHHHHHHHHHHHTB-S
T ss_pred -------cCC-ceEEEEecccccCCHHHhcCCCEEEeCCCCCH-----HHHHHHHHHHHHHhCC
Confidence 133 499999999874 433 4789999883 332 3345776667777775
No 313
>PF01555 N6_N4_Mtase: DNA methylase; InterPro: IPR002941 This domain is found in DNA methylases. In prokaryotes, the major role of DNA methylation is to protect host DNA against degradation by restriction enzymes. This family contains both N-4 cytosine-specific DNA methylases and N-6 Adenine-specific DNA methylases. N-4 cytosine-specific DNA methylases (2.1.1.113 from EC) [] are enzymes that specifically methylate the amino group at the C-4 position of cytosines in DNA. Such enzymes are found as components of type II restriction-modification systems in prokaryotes. Such enzymes recognise a specific sequence in DNA and methylate a cytosine in that sequence. By this action they protect DNA from cleavage by type II restriction enzymes that recognise the same sequence. N-6 adenine-specific DNA methylases (2.1.1.72 from EC) (A-Mtase) are enzymes that specifically methylate the amino group at the C-6 position of adenines in DNA. Such enzymes are found in the three existing types of bacterial restriction-modification systems (in type I system the A-Mtase is the product of the hsdM gene, and in type III it is the product of the mod gene). All of these enzymes recognise a specific sequence in DNA and methylate an adenine in that sequence.; GO: 0003677 DNA binding, 0008170 N-methyltransferase activity, 0006306 DNA methylation; PDB: 2ZIF_A 2ZIE_A 2ZIG_A 1NW6_A 1NW8_A 1NW7_A 1NW5_A 1EG2_A 1BOO_A 1G60_B ....
Probab=77.15 E-value=6.2 Score=40.15 Aligned_cols=54 Identities=17% Similarity=0.220 Sum_probs=39.6
Q ss_pred HHHHHHHHHHhhcCCCCEEEEEcCccchHHHHHhcCCCCCceEEEEeCChHHHHHHHH
Q 002218 699 KQRVEYALQHIKESCATTLVDFGCGSGSLLDSLLDYPTALEKIVGVDISQKSLSRAAK 756 (952)
Q Consensus 699 ~QR~efVldlL~~~k~krVLDIGCGeG~ll~~LAr~g~~~~qVVGVDISeemLe~Ark 756 (952)
.+-.+.+..... .++..|||.=||+|..+.+..+.+ .+.+|+|++++..+.|++
T Consensus 178 ~~l~~~lI~~~t-~~gdiVlDpF~GSGTT~~aa~~l~---R~~ig~E~~~~y~~~a~~ 231 (231)
T PF01555_consen 178 VELIERLIKAST-NPGDIVLDPFAGSGTTAVAAEELG---RRYIGIEIDEEYCEIAKK 231 (231)
T ss_dssp HHHHHHHHHHHS--TT-EEEETT-TTTHHHHHHHHTT----EEEEEESSHHHHHHHHH
T ss_pred HHHHHHHHHhhh-ccceeeehhhhccChHHHHHHHcC---CeEEEEeCCHHHHHHhcC
Confidence 333444444432 367899999999999999888887 789999999999999864
No 314
>cd08035 LARP_4 La RNA-binding domain of La-related protein 4. This domain is found in vertebrate La-related protein 4 (LARP4), also known as c-MPL binding protein. La-type domains often co-occur with RNA-recognition motifs (RRMs). A variety of La-related proteins (LARPs or La ribonucleoproteins), with differing domain architecture, appear to function as RNA-binding proteins in eukaryotic cellular processes.
Probab=77.10 E-value=1.8 Score=39.65 Aligned_cols=70 Identities=21% Similarity=0.198 Sum_probs=51.1
Q ss_pred HHHHHHHhhhhcccccccCCCchhhhHHhhhhcCcccccccceEEEeecccccccccccCcccccchHHHHHHHHHHhhc
Q 002218 108 DKLIASVKHLFSNEFLSSQSPLRGHFIAALRRDGDLYGSVPASVIAVCDSKLANLCKLINPKVESSHLLVLTYIMRAATR 187 (952)
Q Consensus 108 ~~l~~~~~~~f~~e~~~~~~pl~~h~~~~~~r~g~~~g~~p~~~~~~~d~k~~~~ck~~~~~~e~~p~~~~~~~~~a~~~ 187 (952)
+.|+..|.|-|||+=|..+.=|..|+ |--|-||+++||.+- |+ |.+- .| +.+|..|.+.
T Consensus 2 e~i~~QvEyYFSd~NL~~D~fL~~~m--------d~~G~Vpi~~iasF~-ri----k~lt----~d----~~~I~~AL~~ 60 (75)
T cd08035 2 ECLKKQLEFCFSRENLSKDLYLISQM--------DSDQFVPIWTVANME-GI----KKLT----TD----MDLILDVLRS 60 (75)
T ss_pred hHHHhhHHhhcCHhhcccCHHHHHhh--------CcCCCEehHHHhccH-HH----HHhc----CC----HHHHHHHHHc
Confidence 57889999999999999998887775 234999999999853 22 3221 12 3567778877
Q ss_pred cCCcEEeecCce
Q 002218 188 LSEFVVTSEGQL 199 (952)
Q Consensus 188 ~~~~~~~s~~~~ 199 (952)
++- |.+|+++-
T Consensus 61 S~~-levsedg~ 71 (75)
T cd08035 61 SPM-VQVDETGE 71 (75)
T ss_pred CCe-EEEcCCCC
Confidence 654 88888763
No 315
>PF02005 TRM: N2,N2-dimethylguanosine tRNA methyltransferase; InterPro: IPR002905 This enzyme 2.1.1.32 from EC uses S-adenosyl-L-methionine to methylate tRNA: S-AdoMet + tRNA = S-adenosyl-L-homocysteine + tRNA containing N2-methylguanine The TRM1 gene of Saccharomyces cerevisiae is necessary for the N2,N2-dimethylguanosine modification of both mitochondrial and cytoplasmic tRNAs []. The enzyme is found in both eukaryotes and archaea [].; GO: 0003723 RNA binding, 0004809 tRNA (guanine-N2-)-methyltransferase activity, 0008033 tRNA processing; PDB: 2YTZ_B 2DUL_A 2EJU_A 2EJT_A 3AXT_A 3AXS_A.
Probab=77.01 E-value=6.8 Score=45.46 Aligned_cols=125 Identities=14% Similarity=0.169 Sum_probs=74.6
Q ss_pred hhcCCchhHHHHHHHHHHH---hh---c--CCCCEEEEEcCccchHHHHHhcCCCCCceEEEEeCChHHHHHHHHHHhhh
Q 002218 690 QALFSPPLSKQRVEYALQH---IK---E--SCATTLVDFGCGSGSLLDSLLDYPTALEKIVGVDISQKSLSRAAKIIHSK 761 (952)
Q Consensus 690 ~~~F~PPL~~QR~efVldl---L~---~--~k~krVLDIGCGeG~ll~~LAr~g~~~~qVVGVDISeemLe~ArkrLsa~ 761 (952)
...||.|....-++.-+-. +. . .+.-+|||.=+|+|.=+...+...+...+|+.-|+|+++++..+++++-.
T Consensus 18 ~~vFYNP~~~~nRDlsvl~~~~~~~~~~~~~~~~~~lDalaasGvR~iRy~~E~~~~~~v~~NDi~~~a~~~i~~N~~~N 97 (377)
T PF02005_consen 18 APVFYNPVMEFNRDLSVLAIRYLAVLKEKRKGPIRVLDALAASGVRGIRYAKELAGVDKVTANDISPEAVELIKRNLELN 97 (377)
T ss_dssp SSSS--GGGHHHHHHHHHH---HHHHHHCH-S-EEEEETT-TTSHHHHHHHHH-SSECEEEEEES-HHHHHHHHHHHHHC
T ss_pred CCcccCcchhcccceeehhHHHHHHhhhhhcCCceEEeccccccHHHHHHHHHcCCCCEEEEecCCHHHHHHHHHhHhhc
Confidence 4567777666544443222 22 1 13458999999999988777766224579999999999999999886521
Q ss_pred hhcccccCCCCCCCc-cEEEEEcCccccCC-CCCCccEEEEccccccCChhHHHHHHHHHHHccCCC-EEEEE
Q 002218 762 LSKKLDAAVPCTDVK-SAVLFDGSITVFDS-RLHGFDIGTCLEVIEHMEEDEASQFGNIVLSSFRPR-ILIVS 831 (952)
Q Consensus 762 la~~~~~l~Pr~~~~-nVtf~qGDa~dLpf-~d~sFDVVVcieVIEHL~dD~l~~L~eeI~RvLKPG-~LIIS 831 (952)
.... .+++.+.|+..+-. ....||+|= |.=+. .+ .-|.+...+.++.| .+.||
T Consensus 98 -----------~~~~~~~~v~~~DAn~ll~~~~~~fD~ID----lDPfG-Sp-~pfldsA~~~v~~gGll~vT 153 (377)
T PF02005_consen 98 -----------GLEDERIEVSNMDANVLLYSRQERFDVID----LDPFG-SP-APFLDSALQAVKDGGLLCVT 153 (377)
T ss_dssp -----------T-SGCCEEEEES-HHHHHCHSTT-EEEEE----E--SS----HHHHHHHHHHEEEEEEEEEE
T ss_pred -----------cccCceEEEehhhHHHHhhhccccCCEEE----eCCCC-Cc-cHhHHHHHHHhhcCCEEEEe
Confidence 1112 58888989877542 467899982 22222 22 24556788889988 55554
No 316
>PRK11524 putative methyltransferase; Provisional
Probab=76.93 E-value=6 Score=43.62 Aligned_cols=45 Identities=13% Similarity=0.128 Sum_probs=40.9
Q ss_pred CCCCEEEEEcCccchHHHHHhcCCCCCceEEEEeCChHHHHHHHHHHh
Q 002218 712 SCATTLVDFGCGSGSLLDSLLDYPTALEKIVGVDISQKSLSRAAKIIH 759 (952)
Q Consensus 712 ~k~krVLDIGCGeG~ll~~LAr~g~~~~qVVGVDISeemLe~ArkrLs 759 (952)
.++..|||-=||+|..+....+.+ .+.+|+|++++.++.|++|+.
T Consensus 207 ~~GD~VLDPF~GSGTT~~AA~~lg---R~~IG~Ei~~~Y~~~a~~Rl~ 251 (284)
T PRK11524 207 NPGDIVLDPFAGSFTTGAVAKASG---RKFIGIEINSEYIKMGLRRLD 251 (284)
T ss_pred CCCCEEEECCCCCcHHHHHHHHcC---CCEEEEeCCHHHHHHHHHHHH
Confidence 478899999999999998888877 789999999999999999875
No 317
>PRK14718 ribonuclease III; Provisional
Probab=76.76 E-value=4.9 Score=47.62 Aligned_cols=66 Identities=23% Similarity=0.339 Sum_probs=46.5
Q ss_pred CChHhHHH---HhccCc-eeEEEeeeeccccCCCCccccCCCCCceEEEeeecCCcee-eeccccccchHHHHHHHHHHH
Q 002218 16 LTPKAIIV---QKFGRN-AQFTVDEVQDVVQNGCPGLAIPQKGPCLYRCSLQLPEFSV-VSETFKKKKDAEQSAAEKALE 90 (952)
Q Consensus 16 ~tpka~~~---q~~g~~-~~y~~~ev~~~~~~~~~~~~~~q~~~~~~~c~l~lp~~~v-~~~~~~~kkdaeq~aa~~al~ 90 (952)
.-||-.+. |+-|.. -.|++.+... |... -.|.+.+.+.+..+ .+|.=+-||.|||.||+.||+
T Consensus 151 kDyKS~LQE~~Qk~~~~~PeY~li~esG-----------PdH~-k~F~V~V~v~g~~~~G~G~G~SKKeAEQ~AAk~AL~ 218 (467)
T PRK14718 151 KDAKTLLQEYLQGHKIALPTYTVVATHG-----------AAHN-QQFEVECTVPKLDIKVSGSGASRRAAEQAAAKKALD 218 (467)
T ss_pred cCHHHHHHHHHHhcCCCCCeeEEeeeec-----------CCCC-CeEEEEEEECCeeeEEEEEcCCHHHHHHHHHHHHHH
Confidence 35666553 344433 4787754331 2223 38999999998544 578889999999999999999
Q ss_pred HcC
Q 002218 91 KLG 93 (952)
Q Consensus 91 klg 93 (952)
+|+
T Consensus 219 kL~ 221 (467)
T PRK14718 219 EVT 221 (467)
T ss_pred Hhc
Confidence 998
No 318
>PF14954 LIX1: Limb expression 1
Probab=76.17 E-value=2.4 Score=45.76 Aligned_cols=41 Identities=34% Similarity=0.517 Sum_probs=35.7
Q ss_pred cCCCCCceEEEeeecCCceeee--ccccccchHHHHHHHHHHHH
Q 002218 50 IPQKGPCLYRCSLQLPEFSVVS--ETFKKKKDAEQSAAEKALEK 91 (952)
Q Consensus 50 ~~q~~~~~~~c~l~lp~~~v~~--~~~~~kkdaeq~aa~~al~k 91 (952)
+|-.+| .|-|-+.||++|-.- ..|--|-.|.++||.+||=.
T Consensus 52 ~ps~~p-pyVcyVTLPGGSCFGnfq~C~tkAEARR~AAKiALmN 94 (252)
T PF14954_consen 52 VPSPSP-PYVCYVTLPGGSCFGNFQNCPTKAEARRSAAKIALMN 94 (252)
T ss_pred cCCCCC-CeEEEEeCCCCCccCccccCCcHHHHHhhhHHHHHHH
Confidence 477788 899999999998765 67888999999999999954
No 319
>cd08032 LARP_7 La RNA-binding domain of La-related protein 7. LARP7 is a component of the 7SK snRNP, a key factor in the regulation of RNA polymerase II transcription. 7SK functionality is dependent on the presence of LARP7, which is thought to stabilize the 7SK RNA by interacting with its 3' end. The release of 7SK RNA from P-TEFb/HEXIM/7SK complexes activates the cyclin-dependent kinase P-TEFb, which in turn phosphorylates the C-terminal domain of RNA pol II and mediates a transition into productive transcription elongation.
Probab=75.44 E-value=2.3 Score=39.47 Aligned_cols=81 Identities=20% Similarity=0.221 Sum_probs=60.7
Q ss_pred hHHHHHHHHHHHhhhhcccccccCCCchhhhHHhhhhcCcccccccceEEEeecccccccccccCcccccchHHHHHHHH
Q 002218 103 AEEAWDKLIASVKHLFSNEFLSSQSPLRGHFIAALRRDGDLYGSVPASVIAVCDSKLANLCKLINPKVESSHLLVLTYIM 182 (952)
Q Consensus 103 ~~e~~~~l~~~~~~~f~~e~~~~~~pl~~h~~~~~~r~g~~~g~~p~~~~~~~d~k~~~~ck~~~~~~e~~p~~~~~~~~ 182 (952)
++|--+.|...|.|-|||+=|..+.=|..|+ ..+. =|.||+++||.+- |+-+++. | ..+|.
T Consensus 2 ~~~l~~~I~~QvEfYFSd~NL~~D~fL~~~~----~~~~--dG~Vpl~~i~~F~-rmk~lt~--------d----~~~i~ 62 (82)
T cd08032 2 VKQLLADIAKQVDFWFGDVNLHKDRFLREQI----EKSR--DGYIDISLLVSFN-KMKKLTT--------D----GKLIA 62 (82)
T ss_pred HHHHHHHHHHHHHhhcchhhcccCHHHHHHh----cCCC--CCCEeHHHHhcch-HHHHHcC--------C----HHHHH
Confidence 3566788999999999999888887666664 3323 3899999999984 5655554 1 35788
Q ss_pred HHhhccCCcEEeecCceeeee
Q 002218 183 RAATRLSEFVVTSEGQLSIWR 203 (952)
Q Consensus 183 ~a~~~~~~~~~~s~~~~~~~~ 203 (952)
.|.+.++ .|-+++++.=|+|
T Consensus 63 ~Al~~S~-~lev~ed~~~VRR 82 (82)
T cd08032 63 RALKNSS-VVELNLEGTRIRR 82 (82)
T ss_pred HHHhcCC-EEEEcCCCCccCC
Confidence 8888866 4888988776665
No 320
>COG4798 Predicted methyltransferase [General function prediction only]
Probab=74.56 E-value=5.3 Score=43.03 Aligned_cols=116 Identities=9% Similarity=0.088 Sum_probs=64.7
Q ss_pred hhcCCCCEEEEEcCccchHHHHHhcCCCCCceEEEEeCChHHHHHHH--HHHhhhhhcccccCCCCCCCccEEEEEcCcc
Q 002218 709 IKESCATTLVDFGCGSGSLLDSLLDYPTALEKIVGVDISQKSLSRAA--KIIHSKLSKKLDAAVPCTDVKSAVLFDGSIT 786 (952)
Q Consensus 709 L~~~k~krVLDIGCGeG~ll~~LAr~g~~~~qVVGVDISeemLe~Ar--krLsa~la~~~~~l~Pr~~~~nVtf~qGDa~ 786 (952)
....++.+|+|+=-|.|++++-++..-++...|+++=..+...-..+ .++.... ......|++.+-....
T Consensus 44 aGlkpg~tVid~~PGgGy~TrI~s~~vgp~G~Vy~~~p~e~~~~~~~~~~r~~~~~--------~e~~~aN~e~~~~~~~ 115 (238)
T COG4798 44 AGLKPGATVIDLIPGGGYFTRIFSPAVGPKGKVYAYVPAELTKFAKREGPRLNAAA--------REPVYANVEVIGKPLV 115 (238)
T ss_pred eccCCCCEEEEEecCCccHhhhhchhcCCceeEEEecchhhcccccchhhhhhhhh--------hhhhhhhhhhhCCccc
Confidence 34557899999999999999999887666678888765543110000 0111000 0112224444444444
Q ss_pred ccCCCCCCccEEEEccccc-----cCChhHHHHHHHHHHHccCCC-EEEEEec
Q 002218 787 VFDSRLHGFDIGTCLEVIE-----HMEEDEASQFGNIVLSSFRPR-ILIVSTP 833 (952)
Q Consensus 787 dLpf~d~sFDVVVcieVIE-----HL~dD~l~~L~eeI~RvLKPG-~LIISTP 833 (952)
.+. .....|++.....-| .+.......+...+++.|||| +++|...
T Consensus 116 A~~-~pq~~d~~~~~~~yhdmh~k~i~~~~A~~vna~vf~~LKPGGv~~V~dH 167 (238)
T COG4798 116 ALG-APQKLDLVPTAQNYHDMHNKNIHPATAAKVNAAVFKALKPGGVYLVEDH 167 (238)
T ss_pred ccC-CCCcccccccchhhhhhhccccCcchHHHHHHHHHHhcCCCcEEEEEec
Confidence 444 334445544422111 112455566667899999999 5555443
No 321
>PRK13699 putative methylase; Provisional
Probab=73.48 E-value=9.2 Score=41.17 Aligned_cols=46 Identities=15% Similarity=0.213 Sum_probs=41.0
Q ss_pred CCCCEEEEEcCccchHHHHHhcCCCCCceEEEEeCChHHHHHHHHHHhh
Q 002218 712 SCATTLVDFGCGSGSLLDSLLDYPTALEKIVGVDISQKSLSRAAKIIHS 760 (952)
Q Consensus 712 ~k~krVLDIGCGeG~ll~~LAr~g~~~~qVVGVDISeemLe~ArkrLsa 760 (952)
.++..|||-=||+|..+....+.+ .+.+|+|++++..+.|.+|+..
T Consensus 162 ~~g~~vlDpf~Gsgtt~~aa~~~~---r~~~g~e~~~~y~~~~~~r~~~ 207 (227)
T PRK13699 162 HPNAIVLDPFAGSGSTCVAALQSG---RRYIGIELLEQYHRAGQQRLAA 207 (227)
T ss_pred CCCCEEEeCCCCCCHHHHHHHHcC---CCEEEEecCHHHHHHHHHHHHH
Confidence 367899999999999999888877 7899999999999999998764
No 322
>COG1867 TRM1 N2,N2-dimethylguanosine tRNA methyltransferase [Translation, ribosomal structure and biogenesis]
Probab=71.31 E-value=17 Score=42.42 Aligned_cols=126 Identities=17% Similarity=0.151 Sum_probs=81.7
Q ss_pred hhhhhcCCchhHHHHHHHHHHHhhcCC---CCEEEEEcCccchHHHHHhcCCCCCceEEEEeCChHHHHHHHHHHhhhhh
Q 002218 687 RMEQALFSPPLSKQRVEYALQHIKESC---ATTLVDFGCGSGSLLDSLLDYPTALEKIVGVDISQKSLSRAAKIIHSKLS 763 (952)
Q Consensus 687 Rye~~~F~PPL~~QR~efVldlL~~~k---~krVLDIGCGeG~ll~~LAr~g~~~~qVVGVDISeemLe~ArkrLsa~la 763 (952)
-.....||.|-.+--++..+..++... ..+|+|-=+|+|.=+...+...+. .+|+.=|+|+++++..++++.-
T Consensus 23 ~~~~pVFYNP~m~~NRDlsV~~l~~~~~~~~~~v~DalsatGiRgIRya~E~~~-~~v~lNDisp~Avelik~Nv~~--- 98 (380)
T COG1867 23 SKRAPVFYNPAMEFNRDLSVLVLKAFGKLLPKRVLDALSATGIRGIRYAVETGV-VKVVLNDISPKAVELIKENVRL--- 98 (380)
T ss_pred CCCCcceeCchhhhccchhHHHHHHhhccCCeEEeecccccchhHhhhhhhcCc-cEEEEccCCHHHHHHHHHHHHh---
Confidence 345566777766654455444444444 889999999999988877776532 3899999999999999988752
Q ss_pred cccccCCCCCCCccEEEEEcCccccCCC-CCCccEEEEccccccCChhHHHHHHHHHHHccCCC-EEEEE
Q 002218 764 KKLDAAVPCTDVKSAVLFDGSITVFDSR-LHGFDIGTCLEVIEHMEEDEASQFGNIVLSSFRPR-ILIVS 831 (952)
Q Consensus 764 ~~~~~l~Pr~~~~nVtf~qGDa~dLpf~-d~sFDVVVcieVIEHL~dD~l~~L~eeI~RvLKPG-~LIIS 831 (952)
....+...+..|+..+-.. ...||+| =|.=+. .+. -|.+..++.++.| .+-+|
T Consensus 99 ---------N~~~~~~v~n~DAN~lm~~~~~~fd~I----DiDPFG-SPa-PFlDaA~~s~~~~G~l~vT 153 (380)
T COG1867 99 ---------NSGEDAEVINKDANALLHELHRAFDVI----DIDPFG-SPA-PFLDAALRSVRRGGLLCVT 153 (380)
T ss_pred ---------cCcccceeecchHHHHHHhcCCCccEE----ecCCCC-CCc-hHHHHHHHHhhcCCEEEEE
Confidence 1233555566777655433 3678877 222222 222 3445567777775 55554
No 323
>PRK15095 FKBP-type peptidyl-prolyl cis-trans isomerase; Provisional
Probab=71.29 E-value=7 Score=39.96 Aligned_cols=61 Identities=21% Similarity=0.412 Sum_probs=50.5
Q ss_pred CCCCceeEEEEEEEEeecccchhhhhccc----cceEEEeccCccchhhhhhhhhccccccceecccCCchh
Q 002218 581 PSNGCLSFISYSVSLVIEGETMKELLESR----EEFEFEMGTGAVIPQVEVVTAQMSVGQSACFCKELPPQE 648 (952)
Q Consensus 581 p~~gs~~~i~y~~~l~~~~~~~~~~~e~~----~~~~fe~g~~a~~~~l~~v~~q~sv~q~~~~~~~l~~~~ 648 (952)
.+.|+.+.+-|++.+. +|+ +++|. .-++|.+|.|.+.+-++..+..|.+|....|. +||++
T Consensus 5 i~~~~~V~v~Y~~~~~-dG~----v~dst~~~~~P~~f~~G~g~vi~gle~aL~gm~~Ge~~~v~--ipp~~ 69 (156)
T PRK15095 5 VQSNSAVLVHFTLKLD-DGS----TAESTRNNGKPALFRLGDGSLSEGLEQQLLGLKVGDKKTFS--LEPEA 69 (156)
T ss_pred cCCCCEEEEEEEEEeC-CCC----EEEECCCCCCCEEEEeCCCCccHHHHHHHcCCCCCCEEEEE--EChHH
Confidence 3899999999999883 354 56654 45999999999999999999999999998876 65544
No 324
>COG1064 AdhP Zn-dependent alcohol dehydrogenases [General function prediction only]
Probab=69.82 E-value=16 Score=42.15 Aligned_cols=95 Identities=14% Similarity=0.124 Sum_probs=59.1
Q ss_pred hcCCCCEEEEEcCc-cchHHHHHhcCCCCCceEEEEeCChHHHHHHHHHHhhhhhcccccCCCCCCCccEEEEEcC-ccc
Q 002218 710 KESCATTLVDFGCG-SGSLLDSLLDYPTALEKIVGVDISQKSLSRAAKIIHSKLSKKLDAAVPCTDVKSAVLFDGS-ITV 787 (952)
Q Consensus 710 ~~~k~krVLDIGCG-eG~ll~~LAr~g~~~~qVVGVDISeemLe~ArkrLsa~la~~~~~l~Pr~~~~nVtf~qGD-a~d 787 (952)
+..++++|+=+|+| -|.++..+++.-+ .+|+++|.+++-++.|++.-. -.++.+. ...
T Consensus 163 ~~~pG~~V~I~G~GGlGh~avQ~Aka~g--a~Via~~~~~~K~e~a~~lGA------------------d~~i~~~~~~~ 222 (339)
T COG1064 163 NVKPGKWVAVVGAGGLGHMAVQYAKAMG--AEVIAITRSEEKLELAKKLGA------------------DHVINSSDSDA 222 (339)
T ss_pred CCCCCCEEEEECCcHHHHHHHHHHHHcC--CeEEEEeCChHHHHHHHHhCC------------------cEEEEcCCchh
Confidence 34467899998877 5667788887432 899999999999999976411 1222222 111
Q ss_pred cCCCCCCccEEEEccccccCChhHHHHHHHHHHHccCCC--EEEEEec
Q 002218 788 FDSRLHGFDIGTCLEVIEHMEEDEASQFGNIVLSSFRPR--ILIVSTP 833 (952)
Q Consensus 788 Lpf~d~sFDVVVcieVIEHL~dD~l~~L~eeI~RvLKPG--~LIISTP 833 (952)
...-.+.||+|+..-. .+ .+ +...+.|++| ++++--|
T Consensus 223 ~~~~~~~~d~ii~tv~-~~-------~~-~~~l~~l~~~G~~v~vG~~ 261 (339)
T COG1064 223 LEAVKEIADAIIDTVG-PA-------TL-EPSLKALRRGGTLVLVGLP 261 (339)
T ss_pred hHHhHhhCcEEEECCC-hh-------hH-HHHHHHHhcCCEEEEECCC
Confidence 1111223999987654 22 22 3467788887 5555555
No 325
>cd08028 LARP_3 La RNA-binding domain of La-related protein 3. This domain is found at the N-terminus of the La autoantigen and similar proteins, and co-occurs with an RNA-recognition motif (RRM). Together these domains function to bind primary transcripts of RNA polymerase III at their 3' terminus and protect them from exonucleolytic degradation. Binding is specific for the 3'-terminal UUU-OH motif. The La autoantigen is also called Lupus La protein, LARP3, or Sjoegren syndrome type B antigen (SS-B).
Probab=69.58 E-value=3 Score=38.77 Aligned_cols=79 Identities=23% Similarity=0.310 Sum_probs=58.0
Q ss_pred HHHHHHHHHHhhhhcccccccCCCchhhhHHhhhhcCcccccccceEEEeecccccccccccCcccccchHHHHHHHHHH
Q 002218 105 EAWDKLIASVKHLFSNEFLSSQSPLRGHFIAALRRDGDLYGSVPASVIAVCDSKLANLCKLINPKVESSHLLVLTYIMRA 184 (952)
Q Consensus 105 e~~~~l~~~~~~~f~~e~~~~~~pl~~h~~~~~~r~g~~~g~~p~~~~~~~d~k~~~~ck~~~~~~e~~p~~~~~~~~~a 184 (952)
|--..|..+|.|-|||+=|.-+.=|..|+. .. =|-||+++|+.+- |+.+++. | ...|..|
T Consensus 3 ~l~~~I~~QvEfYFSd~NL~~D~fLr~~m~----~~---~G~Vpl~~i~~F~-rmk~l~~--------d----~~~i~~A 62 (82)
T cd08028 3 DLEKKIIRQIEYYFGDFNLPRDKFLKEQIK----ED---DGWVPMEVMLKFN-RLKSLSS--------D----PEVIAKA 62 (82)
T ss_pred HHHHHHHHHHHhhcCHhhhccCHHHHHHHh----cc---CCCEEhHHHhCCh-hHHHhcC--------C----HHHHHHH
Confidence 345679999999999998888865555543 22 4889999999884 4554442 2 3788899
Q ss_pred hhccCC-cEEeecCceeeee
Q 002218 185 ATRLSE-FVVTSEGQLSIWR 203 (952)
Q Consensus 185 ~~~~~~-~~~~s~~~~~~~~ 203 (952)
.+.+.. .|.+++++--|+|
T Consensus 63 l~~S~~~~lev~~d~~~VRR 82 (82)
T cd08028 63 LKKSKSGLIEVSEDKTKIRR 82 (82)
T ss_pred HHhCCCCEEEEcCCCCccCC
Confidence 998763 5888988877765
No 326
>KOG2671 consensus Putative RNA methylase [Replication, recombination and repair]
Probab=69.39 E-value=2.6 Score=48.53 Aligned_cols=85 Identities=18% Similarity=0.222 Sum_probs=59.5
Q ss_pred HHhhcCCCCEEEEEcCccchHHHHHhcCCCCCceEEEEeCChHHHHHHH---HHHhhhhhcccccCCCCCCCccEEEEEc
Q 002218 707 QHIKESCATTLVDFGCGSGSLLDSLLDYPTALEKIVGVDISQKSLSRAA---KIIHSKLSKKLDAAVPCTDVKSAVLFDG 783 (952)
Q Consensus 707 dlL~~~k~krVLDIGCGeG~ll~~LAr~g~~~~qVVGVDISeemLe~Ar---krLsa~la~~~~~l~Pr~~~~nVtf~qG 783 (952)
++....+++-|.|-=-|+|.++...+.+| +.|+|-||+-.++...+ ..+.+...++ .....-+.++.+
T Consensus 202 N~Amv~pGdivyDPFVGTGslLvsaa~FG---a~viGtDIDyr~vragrg~~~si~aNFkQY------g~~~~fldvl~~ 272 (421)
T KOG2671|consen 202 NQAMVKPGDIVYDPFVGTGSLLVSAAHFG---AYVIGTDIDYRTVRAGRGEDESIKANFKQY------GSSSQFLDVLTA 272 (421)
T ss_pred hhhccCCCCEEecCccccCceeeehhhhc---ceeeccccchheeecccCCCcchhHhHHHh------CCcchhhheeee
Confidence 33344578899999999999999999998 89999999999887321 1222222211 112224677888
Q ss_pred CccccCCC-CCCccEEEE
Q 002218 784 SITVFDSR-LHGFDIGTC 800 (952)
Q Consensus 784 Da~dLpf~-d~sFDVVVc 800 (952)
|....+.. ...||+|+|
T Consensus 273 D~sn~~~rsn~~fDaIvc 290 (421)
T KOG2671|consen 273 DFSNPPLRSNLKFDAIVC 290 (421)
T ss_pred cccCcchhhcceeeEEEe
Confidence 88877765 457999999
No 327
>TIGR00675 dcm DNA-methyltransferase (dcm). All proteins in this family for which functions are known are DNA-cytosine methyltransferases. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=69.25 E-value=13 Score=41.66 Aligned_cols=64 Identities=16% Similarity=0.167 Sum_probs=46.0
Q ss_pred EEEEcCccchHHHHHhcCCCCCceEEEEeCChHHHHHHHHHHhhhhhcccccCCCCCCCccEEEEEcCccccCCC-CCCc
Q 002218 717 LVDFGCGSGSLLDSLLDYPTALEKIVGVDISQKSLSRAAKIIHSKLSKKLDAAVPCTDVKSAVLFDGSITVFDSR-LHGF 795 (952)
Q Consensus 717 VLDIGCGeG~ll~~LAr~g~~~~qVVGVDISeemLe~ArkrLsa~la~~~~~l~Pr~~~~nVtf~qGDa~dLpf~-d~sF 795 (952)
|+|+=||-|.+...|.+.| ..-+.++|+++.+++.-+.+.. . .++.+|+.++... ...+
T Consensus 1 vidLF~G~GG~~~Gl~~aG--~~~~~a~e~~~~a~~ty~~N~~-----------------~-~~~~~Di~~~~~~~~~~~ 60 (315)
T TIGR00675 1 FIDLFAGIGGIRLGFEQAG--FKCVFASEIDKYAQKTYEANFG-----------------N-KVPFGDITKISPSDIPDF 60 (315)
T ss_pred CEEEecCccHHHHHHHHcC--CeEEEEEeCCHHHHHHHHHhCC-----------------C-CCCccChhhhhhhhCCCc
Confidence 6899999999999998776 2456789999998888765431 1 3345677766532 3457
Q ss_pred cEEEE
Q 002218 796 DIGTC 800 (952)
Q Consensus 796 DVVVc 800 (952)
|+++.
T Consensus 61 dvl~g 65 (315)
T TIGR00675 61 DILLG 65 (315)
T ss_pred CEEEe
Confidence 88876
No 328
>COG0286 HsdM Type I restriction-modification system methyltransferase subunit [Defense mechanisms]
Probab=69.14 E-value=11 Score=45.03 Aligned_cols=89 Identities=18% Similarity=0.189 Sum_probs=58.1
Q ss_pred HHHHHHHHhhcCCCCEEEEEcCccchHHHHHhcCCCC---CceEEEEeCChHHHHHHHHHHhhhhhcccccCCCCCCCc-
Q 002218 701 RVEYALQHIKESCATTLVDFGCGSGSLLDSLLDYPTA---LEKIVGVDISQKSLSRAAKIIHSKLSKKLDAAVPCTDVK- 776 (952)
Q Consensus 701 R~efVldlL~~~k~krVLDIGCGeG~ll~~LAr~g~~---~~qVVGVDISeemLe~ArkrLsa~la~~~~~l~Pr~~~~- 776 (952)
..+.+++++.+.+..+|.|--||+|.++...++.... ...++|.|+++.....|+-++--+ +..
T Consensus 174 v~~liv~~l~~~~~~~i~DpacGsgg~l~~a~~~~~~~~~~~~~yGqE~~~~t~~l~~mN~~lh------------gi~~ 241 (489)
T COG0286 174 VSELIVELLDPEPRNSIYDPACGSGGMLLQAAKYLKRHQDEIFIYGQEINDTTYRLAKMNLILH------------GIEG 241 (489)
T ss_pred HHHHHHHHcCCCCCCeecCCCCchhHHHHHHHHHHHhhccceeEEEEeCCHHHHHHHHHHHHHh------------CCCc
Confidence 3457777777656679999999999998665543211 256999999999999997664211 111
Q ss_pred cEEEEEcCccccCC-----CCCCccEEEEc
Q 002218 777 SAVLFDGSITVFDS-----RLHGFDIGTCL 801 (952)
Q Consensus 777 nVtf~qGDa~dLpf-----~d~sFDVVVci 801 (952)
.+...++|...-|. ....||.|++.
T Consensus 242 ~~~i~~~dtl~~~~~~~~~~~~~~D~viaN 271 (489)
T COG0286 242 DANIRHGDTLSNPKHDDKDDKGKFDFVIAN 271 (489)
T ss_pred cccccccccccCCcccccCCccceeEEEeC
Confidence 34455555433332 23569988874
No 329
>COG1063 Tdh Threonine dehydrogenase and related Zn-dependent dehydrogenases [Amino acid transport and metabolism / General function prediction only]
Probab=68.75 E-value=39 Score=38.42 Aligned_cols=128 Identities=20% Similarity=0.181 Sum_probs=73.5
Q ss_pred hhh-hhhhhcCCchhHHHHHHHHHHHhhcCCCCEEEEEcCcc-chHHHHHhcCCCCCceEEEEeCChHHHHHHHHHHhhh
Q 002218 684 PED-RMEQALFSPPLSKQRVEYALQHIKESCATTLVDFGCGS-GSLLDSLLDYPTALEKIVGVDISQKSLSRAAKIIHSK 761 (952)
Q Consensus 684 ~Ee-Rye~~~F~PPL~~QR~efVldlL~~~k~krVLDIGCGe-G~ll~~LAr~g~~~~qVVGVDISeemLe~ArkrLsa~ 761 (952)
++. ..+...+..|+.-.-.-...... ...+.+|+=+|||. |.++..+++.. ...+|+.+|.+++-++.|++....
T Consensus 139 pd~~~~~~aal~epla~~~~~~a~~~~-~~~~~~V~V~GaGpIGLla~~~a~~~-Ga~~Viv~d~~~~Rl~~A~~~~g~- 215 (350)
T COG1063 139 PDGIDEEAAALTEPLATAYHGHAERAA-VRPGGTVVVVGAGPIGLLAIALAKLL-GASVVIVVDRSPERLELAKEAGGA- 215 (350)
T ss_pred CCCCChhhhhhcChhhhhhhhhhhccC-CCCCCEEEEECCCHHHHHHHHHHHHc-CCceEEEeCCCHHHHHHHHHhCCC-
Confidence 444 66667777777764332222221 22334999999996 66656666654 247999999999999999874321
Q ss_pred hhcccccCCCCCCCccEEEEEc-Cccc--cCCC-CCCccEEEEccccccCChhHHHHHHHHHHHccCCC--EEEEEecCC
Q 002218 762 LSKKLDAAVPCTDVKSAVLFDG-SITV--FDSR-LHGFDIGTCLEVIEHMEEDEASQFGNIVLSSFRPR--ILIVSTPNY 835 (952)
Q Consensus 762 la~~~~~l~Pr~~~~nVtf~qG-Da~d--Lpf~-d~sFDVVVcieVIEHL~dD~l~~L~eeI~RvLKPG--~LIISTPN~ 835 (952)
..+..... +... +... ..+||+++-.-- . . ..+ +.+..+++|| ++++.++..
T Consensus 216 --------------~~~~~~~~~~~~~~~~~~t~g~g~D~vie~~G---~--~--~~~-~~ai~~~r~gG~v~~vGv~~~ 273 (350)
T COG1063 216 --------------DVVVNPSEDDAGAEILELTGGRGADVVIEAVG---S--P--PAL-DQALEALRPGGTVVVVGVYGG 273 (350)
T ss_pred --------------eEeecCccccHHHHHHHHhCCCCCCEEEECCC---C--H--HHH-HHHHHHhcCCCEEEEEeccCC
Confidence 11111111 1100 1111 237998875433 1 1 133 3588889997 666677644
Q ss_pred c
Q 002218 836 E 836 (952)
Q Consensus 836 e 836 (952)
+
T Consensus 274 ~ 274 (350)
T COG1063 274 E 274 (350)
T ss_pred c
Confidence 4
No 330
>COG1255 Uncharacterized protein conserved in archaea [Function unknown]
Probab=68.56 E-value=21 Score=35.73 Aligned_cols=92 Identities=17% Similarity=0.169 Sum_probs=57.9
Q ss_pred cCCCCEEEEEcCccch-HHHHHhcCCCCCceEEEEeCChHHHHHHHHHHhhhhhcccccCCCCCCCccEEEEEcCccccC
Q 002218 711 ESCATTLVDFGCGSGS-LLDSLLDYPTALEKIVGVDISQKSLSRAAKIIHSKLSKKLDAAVPCTDVKSAVLFDGSITVFD 789 (952)
Q Consensus 711 ~~k~krVLDIGCGeG~-ll~~LAr~g~~~~qVVGVDISeemLe~ArkrLsa~la~~~~~l~Pr~~~~nVtf~qGDa~dLp 789 (952)
.....+|+++|-|-=. .+..|+++| ..|+++||.+. .|. ..++++..|+.+..
T Consensus 11 e~~~gkVvEVGiG~~~~VA~~L~e~g---~dv~atDI~~~---~a~--------------------~g~~~v~DDitnP~ 64 (129)
T COG1255 11 ENARGKVVEVGIGFFLDVAKRLAERG---FDVLATDINEK---TAP--------------------EGLRFVVDDITNPN 64 (129)
T ss_pred HhcCCcEEEEccchHHHHHHHHHHcC---CcEEEEecccc---cCc--------------------ccceEEEccCCCcc
Confidence 3456699999987533 446788887 89999999876 221 36788898988765
Q ss_pred CC-CCCccEEEEccccccCChhHHHHHHHHHHHccCCCEEEEEecC
Q 002218 790 SR-LHGFDIGTCLEVIEHMEEDEASQFGNIVLSSFRPRILIVSTPN 834 (952)
Q Consensus 790 f~-d~sFDVVVcieVIEHL~dD~l~~L~eeI~RvLKPG~LIISTPN 834 (952)
.. ..+.|+|.++-- +++-+..+.+ +.+.++- -++|.+--
T Consensus 65 ~~iY~~A~lIYSiRp----ppEl~~~ild-va~aVga-~l~I~pL~ 104 (129)
T COG1255 65 ISIYEGADLIYSIRP----PPELQSAILD-VAKAVGA-PLYIKPLT 104 (129)
T ss_pred HHHhhCccceeecCC----CHHHHHHHHH-HHHhhCC-CEEEEecC
Confidence 43 356788877532 2233344443 5554433 34444433
No 331
>KOG3924 consensus Putative protein methyltransferase involved in meiosis and transcriptional silencing (Dot1) [Cell cycle control, cell division, chromosome partitioning; Transcription]
Probab=68.23 E-value=14 Score=43.36 Aligned_cols=118 Identities=17% Similarity=0.138 Sum_probs=76.7
Q ss_pred HHHHHhhcCCCCEEEEEcCccchHHHHHhcCCCCCceEEEEeCChHHHHHHHHHHh---hhhhcccccCCCCCCCccEEE
Q 002218 704 YALQHIKESCATTLVDFGCGSGSLLDSLLDYPTALEKIVGVDISQKSLSRAAKIIH---SKLSKKLDAAVPCTDVKSAVL 780 (952)
Q Consensus 704 fVldlL~~~k~krVLDIGCGeG~ll~~LAr~g~~~~qVVGVDISeemLe~ArkrLs---a~la~~~~~l~Pr~~~~nVtf 780 (952)
-+.+.++..+...-.|+|.|-|.+...++..++ ...-+|+++....-+.|..... ..+... ...+..++.
T Consensus 183 si~dEl~~g~~D~F~DLGSGVGqlv~~~aa~a~-~k~svG~eim~~pS~~a~~~~~~~kk~~k~f------Gk~~~~~~~ 255 (419)
T KOG3924|consen 183 SIVDELKLGPADVFMDLGSGVGQLVCFVAAYAG-CKKSVGFEIMDKPSQCAELNKEEFKKLMKHF------GKKPNKIET 255 (419)
T ss_pred HHHHHhccCCCCcccCCCcccchhhHHHHHhhc-cccccceeeecCcHHHHHHHHHHHHHHHHHh------CCCcCceee
Confidence 345556667788999999999999998888773 3567899988866555543321 111111 112457888
Q ss_pred EEcCccccCCC---CCCccEEEEccccccCChhHHHHHHHHHHHccCCCEEEEE
Q 002218 781 FDGSITVFDSR---LHGFDIGTCLEVIEHMEEDEASQFGNIVLSSFRPRILIVS 831 (952)
Q Consensus 781 ~qGDa~dLpf~---d~sFDVVVcieVIEHL~dD~l~~L~eeI~RvLKPG~LIIS 831 (952)
++|+..+.... ....++|+...+ -+.++..-.+. +++.-+++|.-||+
T Consensus 256 i~gsf~~~~~v~eI~~eatvi~vNN~--~Fdp~L~lr~~-eil~~ck~gtrIiS 306 (419)
T KOG3924|consen 256 IHGSFLDPKRVTEIQTEATVIFVNNV--AFDPELKLRSK-EILQKCKDGTRIIS 306 (419)
T ss_pred cccccCCHHHHHHHhhcceEEEEecc--cCCHHHHHhhH-HHHhhCCCcceEec
Confidence 99988765432 345778877766 23434434444 79999999944444
No 332
>KOG1596 consensus Fibrillarin and related nucleolar RNA-binding proteins [RNA processing and modification]
Probab=68.17 E-value=16 Score=40.71 Aligned_cols=102 Identities=13% Similarity=0.073 Sum_probs=68.2
Q ss_pred hcCCCCEEEEEcCccchHHHHHhcCCCCCceEEEEeCCh----HHHHHHHHHHhhhhhcccccCCCCCCCccEEEEEcCc
Q 002218 710 KESCATTLVDFGCGSGSLLDSLLDYPTALEKIVGVDISQ----KSLSRAAKIIHSKLSKKLDAAVPCTDVKSAVLFDGSI 785 (952)
Q Consensus 710 ~~~k~krVLDIGCGeG~ll~~LAr~g~~~~qVVGVDISe----emLe~ArkrLsa~la~~~~~l~Pr~~~~nVtf~qGDa 785 (952)
...++.+||=+|.+.|........--++..-|++|+.|. +.+..|+++ .||--+.-|+
T Consensus 153 hikpGsKVLYLGAasGttVSHvSDiVGpeG~VYAVEfs~rsGRdL~nmAkkR------------------tNiiPIiEDA 214 (317)
T KOG1596|consen 153 HIKPGSKVLYLGAASGTTVSHVSDIVGPEGCVYAVEFSHRSGRDLINMAKKR------------------TNIIPIIEDA 214 (317)
T ss_pred eecCCceEEEeeccCCceeehhhcccCCCceEEEEEecccchHHHHHHhhcc------------------CCceeeeccC
Confidence 345789999999999999988887766778899999987 455666543 2455555566
Q ss_pred cccCC---CCCCccEEEEccccccCChhHHHHHHHHHHHccCCC-EEEEEec
Q 002218 786 TVFDS---RLHGFDIGTCLEVIEHMEEDEASQFGNIVLSSFRPR-ILIVSTP 833 (952)
Q Consensus 786 ~dLpf---~d~sFDVVVcieVIEHL~dD~l~~L~eeI~RvLKPG-~LIISTP 833 (952)
....- .-.-.|+|++- | -++++...+.-+..-+||+| .++|+.-
T Consensus 215 rhP~KYRmlVgmVDvIFaD-v---aqpdq~RivaLNA~~FLk~gGhfvisik 262 (317)
T KOG1596|consen 215 RHPAKYRMLVGMVDVIFAD-V---AQPDQARIVALNAQYFLKNGGHFVISIK 262 (317)
T ss_pred CCchheeeeeeeEEEEecc-C---CCchhhhhhhhhhhhhhccCCeEEEEEe
Confidence 54211 11235666542 2 13466666666788999998 7777654
No 333
>PF03141 Methyltransf_29: Putative S-adenosyl-L-methionine-dependent methyltransferase; InterPro: IPR004159 Members of this family of hypothetical plant proteins are putative methyltransferases. ; GO: 0008168 methyltransferase activity
Probab=65.93 E-value=17 Score=43.83 Aligned_cols=122 Identities=14% Similarity=0.171 Sum_probs=71.7
Q ss_pred hhhhhhcCCchhHHHHHHHHHHHhh----cCCCCEEEEEcCccchHHHHHhcCCCCCceEEEEeCChHHHHHHHHHHhhh
Q 002218 686 DRMEQALFSPPLSKQRVEYALQHIK----ESCATTLVDFGCGSGSLLDSLLDYPTALEKIVGVDISQKSLSRAAKIIHSK 761 (952)
Q Consensus 686 eRye~~~F~PPL~~QR~efVldlL~----~~k~krVLDIGCGeG~ll~~LAr~g~~~~qVVGVDISeemLe~ArkrLsa~ 761 (952)
+.|.... ...+.|+.....++. ...-..|+|...|.|.|+.+|.+..-=+.+|+-+ ..+..|.....|
T Consensus 337 e~F~~Dt---~~Wk~~V~~Y~~l~~~~i~~~~iRNVMDMnAg~GGFAAAL~~~~VWVMNVVP~-~~~ntL~vIydR---- 408 (506)
T PF03141_consen 337 EEFKEDT---KHWKKRVSHYKKLLGLAIKWGRIRNVMDMNAGYGGFAAALIDDPVWVMNVVPV-SGPNTLPVIYDR---- 408 (506)
T ss_pred HHHHHHH---HHHHHHHHHHHHhhcccccccceeeeeeecccccHHHHHhccCCceEEEeccc-CCCCcchhhhhc----
Confidence 3444444 456666666655443 3345689999999999999998765111233333 123333333221
Q ss_pred hhcccccCCCCCCCccEEEEEcCccccCCCCCCccEEEEccccccCCh--hHHHHHHHHHHHccCCC-EEEE
Q 002218 762 LSKKLDAAVPCTDVKSAVLFDGSITVFDSRLHGFDIGTCLEVIEHMEE--DEASQFGNIVLSSFRPR-ILIV 830 (952)
Q Consensus 762 la~~~~~l~Pr~~~~nVtf~qGDa~dLpf~d~sFDVVVcieVIEHL~d--D~l~~L~eeI~RvLKPG-~LII 830 (952)
+. |-.++-=.+.++.-..+||+|-+..++.+... +-...+. +|-|+|+|+ .+||
T Consensus 409 -----------GL---IG~yhDWCE~fsTYPRTYDLlHA~~lfs~~~~rC~~~~ill-EmDRILRP~G~~ii 465 (506)
T PF03141_consen 409 -----------GL---IGVYHDWCEAFSTYPRTYDLLHADGLFSLYKDRCEMEDILL-EMDRILRPGGWVII 465 (506)
T ss_pred -----------cc---chhccchhhccCCCCcchhheehhhhhhhhcccccHHHHHH-HhHhhcCCCceEEE
Confidence 11 12222122335555789999999988877652 2223444 699999999 5555
No 334
>cd08283 FDH_like_1 Glutathione-dependent formaldehyde dehydrogenase related proteins, child 1. Members identified as glutathione-dependent formaldehyde dehydrogenase(FDH), a member of the zinc-dependent/medium chain alcohol dehydrogenase family. FDH converts formaldehyde and NAD(P) to formate and NAD(P)H. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. MDH family uses NAD(H) as a cofactor in the interconversion of alcohols and aldehydes, or ketones. Like many zinc-dependent alcohol dehydrogenases (ADH) of the medium chain alcohol dehydrogenase/reductase family (MDR), these FDHs form dimers, with 4 zinc ions per dimer. The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. T
Probab=65.93 E-value=40 Score=38.31 Aligned_cols=49 Identities=18% Similarity=0.288 Sum_probs=38.1
Q ss_pred HhhcCCCCEEEEEcCcc-chHHHHHhcCCCCCceEEEEeCChHHHHHHHHH
Q 002218 708 HIKESCATTLVDFGCGS-GSLLDSLLDYPTALEKIVGVDISQKSLSRAAKI 757 (952)
Q Consensus 708 lL~~~k~krVLDIGCGe-G~ll~~LAr~g~~~~qVVGVDISeemLe~Arkr 757 (952)
.....++.+||.+|||. |..+..+++..+ ..+++++|.+++.++.+++.
T Consensus 179 ~~~~~~g~~VlV~g~G~vG~~~~~la~~~g-~~~vi~~~~~~~~~~~~~~~ 228 (386)
T cd08283 179 LAEVKPGDTVAVWGCGPVGLFAARSAKLLG-AERVIAIDRVPERLEMARSH 228 (386)
T ss_pred hccCCCCCEEEEECCCHHHHHHHHHHHHcC-CCEEEEEcCCHHHHHHHHHc
Confidence 33445678999999998 888888887653 23699999999999888653
No 335
>PF02737 3HCDH_N: 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain; InterPro: IPR006176 3-hydroxyacyl-CoA dehydrogenase (1.1.1.35 from EC) (HCDH) [] is an enzyme involved in fatty acid metabolism, it catalyzes the reduction of 3-hydroxyacyl-CoA to 3-oxoacyl-CoA. Most eukaryotic cells have 2 fatty-acid beta-oxidation systems, one located in mitochondria and the other in peroxisomes. In peroxisomes 3-hydroxyacyl-CoA dehydrogenase forms, with enoyl-CoA hydratase (ECH) and 3,2-trans-enoyl-CoA isomerase (ECI) a multifunctional enzyme where the N-terminal domain bears the hydratase/isomerase activities and the C-terminal domain the dehydrogenase activity. There are two mitochondrial enzymes: one which is monofunctional and the other which is, like its peroxisomal counterpart, multifunctional. In Escherichia coli (gene fadB) and Pseudomonas fragi (gene faoA) HCDH is part of a multifunctional enzyme which also contains an ECH/ECI domain as well as a 3-hydroxybutyryl-CoA epimerase domain []. There are two major regions of similarity in the sequences of proteins of the HCDH family, the first one located in the N-terminal, corresponds to the NAD-binding site, the second one is located in the centre of the sequence. This represents the C-terminal domain which is also found in lambda crystallin. Some proteins include two copies of this domain.; GO: 0003857 3-hydroxyacyl-CoA dehydrogenase activity, 0016491 oxidoreductase activity, 0006631 fatty acid metabolic process, 0055114 oxidation-reduction process; PDB: 3K6J_A 1ZCJ_A 2X58_A 1ZEJ_A 3HDH_B 2WTB_A 1WDL_B 2D3T_B 1WDK_A 1WDM_B ....
Probab=65.13 E-value=1.7e+02 Score=30.43 Aligned_cols=159 Identities=13% Similarity=0.066 Sum_probs=79.4
Q ss_pred EEEEEcCccch--HHHHHhcCCCCCceEEEEeCChHHHHHHHHHHhhhhhcccccCCC-----CCCCccEEEEEcCcccc
Q 002218 716 TLVDFGCGSGS--LLDSLLDYPTALEKIVGVDISQKSLSRAAKIIHSKLSKKLDAAVP-----CTDVKSAVLFDGSITVF 788 (952)
Q Consensus 716 rVLDIGCGeG~--ll~~LAr~g~~~~qVVGVDISeemLe~ArkrLsa~la~~~~~l~P-----r~~~~nVtf~qGDa~dL 788 (952)
+|.=||+|.-. ++..++..| .+|+-+|.+++.++.+++++...+....+...- .....++.+ ..|+.++
T Consensus 1 ~V~ViGaG~mG~~iA~~~a~~G---~~V~l~d~~~~~l~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~i~~-~~dl~~~ 76 (180)
T PF02737_consen 1 KVAVIGAGTMGRGIAALFARAG---YEVTLYDRSPEALERARKRIERLLDRLVRKGRLSQEEADAALARISF-TTDLEEA 76 (180)
T ss_dssp EEEEES-SHHHHHHHHHHHHTT---SEEEEE-SSHHHHHHHHHHHHHHHHHHHHTTTTTHHHHHHHHHTEEE-ESSGGGG
T ss_pred CEEEEcCCHHHHHHHHHHHhCC---CcEEEEECChHHHHhhhhHHHHHHhhhhhhccchhhhhhhhhhhccc-ccCHHHH
Confidence 46668888532 445566677 899999999999999988776543321110000 011234554 3354433
Q ss_pred CCCCCCccEEEEccccccCChhHHHHHHHHHHHccCCCEEEE-EecCCchhHHHHhhccCccCCCCcchhhhccccccCC
Q 002218 789 DSRLHGFDIGTCLEVIEHMEEDEASQFGNIVLSSFRPRILIV-STPNYEYNAILQKSSSTIQEDDPDEKTQLQSCKFRNH 867 (952)
Q Consensus 789 pf~d~sFDVVVcieVIEHL~dD~l~~L~eeI~RvLKPG~LII-STPN~efN~lf~~L~~~ta~eYPde~~g~~~~~fRh~ 867 (952)
...|+|+=. +.|.++ ..+.+.+++.+++.|+.++. .|-...-..+...+ ..|..-. ...|-++
T Consensus 77 ----~~adlViEa-i~E~l~--~K~~~~~~l~~~~~~~~ilasnTSsl~i~~la~~~------~~p~R~i---g~Hf~~P 140 (180)
T PF02737_consen 77 ----VDADLVIEA-IPEDLE--LKQELFAELDEICPPDTILASNTSSLSISELAAAL------SRPERFI---GMHFFNP 140 (180)
T ss_dssp ----CTESEEEE--S-SSHH--HHHHHHHHHHCCS-TTSEEEE--SSS-HHHHHTTS------STGGGEE---EEEE-SS
T ss_pred ----hhhheehhh-ccccHH--HHHHHHHHHHHHhCCCceEEecCCCCCHHHHHhcc------CcCceEE---EEecccc
Confidence 256665432 223332 23445556888999984444 44433333333322 1121111 1122233
Q ss_pred CCc--------cccCHHHHHHHHHHHHHHcCcEEE
Q 002218 868 DHK--------FEWTRDQFNCWATELAARHNYSVE 894 (952)
Q Consensus 868 DHk--------FEWTReEFqsWae~La~q~GYsVe 894 (952)
-|. ...|..+...++..++.+.|....
T Consensus 141 ~~~~~lVEvv~~~~T~~~~~~~~~~~~~~~gk~pv 175 (180)
T PF02737_consen 141 PHLMPLVEVVPGPKTSPETVDRVRALLRSLGKTPV 175 (180)
T ss_dssp TTT--EEEEEE-TTS-HHHHHHHHHHHHHTT-EEE
T ss_pred cccCceEEEeCCCCCCHHHHHHHHHHHHHCCCEEE
Confidence 332 347888888898899988886553
No 336
>COG4017 Uncharacterized protein conserved in archaea [Function unknown]
Probab=64.35 E-value=28 Score=37.66 Aligned_cols=155 Identities=17% Similarity=0.207 Sum_probs=93.2
Q ss_pred hHHHHHHHHHHHhhcCCCCEEEEEcCc-cchHHHHHhcCCCCCceEEEEeCChHHHHHHHHHHhhhhhcccccCCCCCCC
Q 002218 697 LSKQRVEYALQHIKESCATTLVDFGCG-SGSLLDSLLDYPTALEKIVGVDISQKSLSRAAKIIHSKLSKKLDAAVPCTDV 775 (952)
Q Consensus 697 L~~QR~efVldlL~~~k~krVLDIGCG-eG~ll~~LAr~g~~~~qVVGVDISeemLe~ArkrLsa~la~~~~~l~Pr~~~ 775 (952)
+....++.+.+.......++||-+|.= +|.+...+.... .+|+-+||.+.|-... +
T Consensus 28 I~~~K~~ai~~~~~~~E~~~vli~G~YltG~~~a~~Ls~~---~~vtv~Di~p~~r~~l--------------------p 84 (254)
T COG4017 28 IAKKKYQAIRDFLEGEEFKEVLIFGVYLTGNYTAQMLSKA---DKVTVVDIHPFMRGFL--------------------P 84 (254)
T ss_pred HHHHHHHHhhhhhcccCcceEEEEEeeehhHHHHHHhccc---ceEEEecCCHHHHhcC--------------------C
Confidence 344556666655555678899999964 788877666543 7999999988653222 2
Q ss_pred ccEEEEEcCccccCCCCCCccEEEEccccccCChhHHHHHHHHHHHccCCCEEEEEecCCc--------hhHHHHhhccC
Q 002218 776 KSAVLFDGSITVFDSRLHGFDIGTCLEVIEHMEEDEASQFGNIVLSSFRPRILIVSTPNYE--------YNAILQKSSST 847 (952)
Q Consensus 776 ~nVtf~qGDa~dLpf~d~sFDVVVcieVIEHL~dD~l~~L~eeI~RvLKPG~LIISTPN~e--------fN~lf~~L~~~ 847 (952)
.+|+|..+ +.+..+.+|+|+-.--|--+.++ ..+-+.|+.+|+..|..+ ||.-..++...
T Consensus 85 ~~v~Fr~~----~~~~~G~~DlivDlTGlGG~~Pe--------~L~~fnp~vfiVEdP~gn~~D~~I~eyn~T~eRlea~ 152 (254)
T COG4017 85 NNVKFRNL----LKFIRGEVDLIVDLTGLGGIEPE--------FLAKFNPKVFIVEDPKGNVFDVDIYEYNNTYERLEAF 152 (254)
T ss_pred CCccHhhh----cCCCCCceeEEEeccccCCCCHH--------HHhccCCceEEEECCCCCCCccchhhcCCHHHHHHhh
Confidence 34666543 33456788999998888777733 345578999999998653 33222222100
Q ss_pred ccCCCCcchhhhcccccc-CCCCccccCHHHHHHHHHHHHHHcC
Q 002218 848 IQEDDPDEKTQLQSCKFR-NHDHKFEWTRDQFNCWATELAARHN 890 (952)
Q Consensus 848 ta~eYPde~~g~~~~~fR-h~DHkFEWTReEFqsWae~La~q~G 890 (952)
-. .+ +.+....++. .....+-.|.+.++..+..+-..+|
T Consensus 153 ee-~~---k~~l~~~~~~AKTSGTmTLtv~tir~aa~~le~~~G 192 (254)
T COG4017 153 EE-KA---KVGLLKTYRKAKTSGTMTLTVDTIRDAARELESLDG 192 (254)
T ss_pred Hh-hh---hhhhhhccccccccceEEEEhHHHHHHHHHHhhhcc
Confidence 00 00 0111111111 1123466888888887777776666
No 337
>PRK09424 pntA NAD(P) transhydrogenase subunit alpha; Provisional
Probab=64.28 E-value=38 Score=41.05 Aligned_cols=43 Identities=9% Similarity=0.054 Sum_probs=34.2
Q ss_pred CCCCEEEEEcCcc-chHHHHHhcCCCCCceEEEEeCChHHHHHHHH
Q 002218 712 SCATTLVDFGCGS-GSLLDSLLDYPTALEKIVGVDISQKSLSRAAK 756 (952)
Q Consensus 712 ~k~krVLDIGCGe-G~ll~~LAr~g~~~~qVVGVDISeemLe~Ark 756 (952)
.++.+|+=+|||. |..+...++..+ .+|+++|.+++-++.+++
T Consensus 163 ~pg~kVlViGaG~iGL~Ai~~Ak~lG--A~V~a~D~~~~rle~aes 206 (509)
T PRK09424 163 VPPAKVLVIGAGVAGLAAIGAAGSLG--AIVRAFDTRPEVAEQVES 206 (509)
T ss_pred cCCCEEEEECCcHHHHHHHHHHHHCC--CEEEEEeCCHHHHHHHHH
Confidence 4678999999995 556666665543 689999999999998865
No 338
>TIGR00561 pntA NAD(P) transhydrogenase, alpha subunit. In some species, such as Rhodospirillum rubrum, the alpha chain is replaced by two shorter chains, both with some homology to the full-length alpha chain modeled here. These score below the trusted cutoff.
Probab=62.91 E-value=20 Score=43.33 Aligned_cols=111 Identities=10% Similarity=0.085 Sum_probs=58.5
Q ss_pred CCCEEEEEcCccc-hHHHHHhcCCCCCceEEEEeCChHHHHHHHHHHhhhhhccc--ccCCCCCCCccEEEEEcCccc--
Q 002218 713 CATTLVDFGCGSG-SLLDSLLDYPTALEKIVGVDISQKSLSRAAKIIHSKLSKKL--DAAVPCTDVKSAVLFDGSITV-- 787 (952)
Q Consensus 713 k~krVLDIGCGeG-~ll~~LAr~g~~~~qVVGVDISeemLe~ArkrLsa~la~~~--~~l~Pr~~~~nVtf~qGDa~d-- 787 (952)
++.+|+=+|||.- ..+..+++..+ ..|+.+|.+.+.++.++. +....-... +....+.+. .+..-.+..+
T Consensus 163 p~akVlViGaG~iGl~Aa~~ak~lG--A~V~v~d~~~~rle~a~~-lGa~~v~v~~~e~g~~~~gY--a~~~s~~~~~~~ 237 (511)
T TIGR00561 163 PPAKVLVIGAGVAGLAAIGAANSLG--AIVRAFDTRPEVKEQVQS-MGAEFLELDFKEEGGSGDGY--AKVMSEEFIAAE 237 (511)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHCC--CEEEEEeCCHHHHHHHHH-cCCeEEeccccccccccccc--eeecCHHHHHHH
Confidence 5689999999964 55555554432 679999999998887764 211000000 000000000 0000000000
Q ss_pred ---cCCCCCCccEEEEccccccCChhHHHHHHHHHHHccCCCEEEE
Q 002218 788 ---FDSRLHGFDIGTCLEVIEHMEEDEASQFGNIVLSSFRPRILIV 830 (952)
Q Consensus 788 ---Lpf~d~sFDVVVcieVIEHL~dD~l~~L~eeI~RvLKPG~LII 830 (952)
++.....+|+|+..-.+.--+.+ ..+.+++.+.+|||.+|+
T Consensus 238 ~~~~~e~~~~~DIVI~TalipG~~aP--~Lit~emv~~MKpGsvIV 281 (511)
T TIGR00561 238 MELFAAQAKEVDIIITTALIPGKPAP--KLITEEMVDSMKAGSVIV 281 (511)
T ss_pred HHHHHHHhCCCCEEEECcccCCCCCC--eeehHHHHhhCCCCCEEE
Confidence 11124679999887766554322 244567899999993333
No 339
>cd08036 LARP_5 La RNA-binding domain of La-related protein 5. This domain is found in vertebrate La-related protein 5 (LARP5). A variety of La-related proteins (LARPs or La ribonucleoproteins), with differing domain architecture, appear to function as RNA-binding proteins in eukaryotic cellular processes.
Probab=62.13 E-value=1.3 Score=40.56 Aligned_cols=70 Identities=23% Similarity=0.228 Sum_probs=52.1
Q ss_pred HHHHHHHhhhhcccccccCCCchhhhHHhhhhcCcccccccceEEEeecccccccccccCcccccchHHHHHHHHHHhhc
Q 002218 108 DKLIASVKHLFSNEFLSSQSPLRGHFIAALRRDGDLYGSVPASVIAVCDSKLANLCKLINPKVESSHLLVLTYIMRAATR 187 (952)
Q Consensus 108 ~~l~~~~~~~f~~e~~~~~~pl~~h~~~~~~r~g~~~g~~p~~~~~~~d~k~~~~ck~~~~~~e~~p~~~~~~~~~a~~~ 187 (952)
+.|...|.|-|||+=|..++=|..|+ |.-|-||+++||.+. |+.++-. | +.+|..|.+.
T Consensus 2 e~i~kQvEyYFS~~NL~~D~fLr~~m--------d~~g~Vpi~~ia~F~-rik~Lt~--------D----~~lI~~aL~~ 60 (75)
T cd08036 2 ELLKKTLEFCLSRENLASDMYLISQM--------DSDQYVPIMTVANLD-HIKKLST--------D----VDLIVDVLRS 60 (75)
T ss_pred hhhhcceeeeechhhccccHHHHHHh--------ccCCCEehHHHhccH-HHHHhcC--------C----HHHHHHHHhh
Confidence 45788999999999999999888887 335999999999875 3333322 1 3577788888
Q ss_pred cCCcEEeecCce
Q 002218 188 LSEFVVTSEGQL 199 (952)
Q Consensus 188 ~~~~~~~s~~~~ 199 (952)
++- |.+|+.+-
T Consensus 61 S~~-vevse~g~ 71 (75)
T cd08036 61 LPL-VQVDEKGE 71 (75)
T ss_pred CCe-EEECCCCC
Confidence 664 88887654
No 340
>PF03269 DUF268: Caenorhabditis protein of unknown function, DUF268; InterPro: IPR004951 This family consists of proteins of unknown function found in Caenorhabditis species.
Probab=62.11 E-value=5.7 Score=41.59 Aligned_cols=44 Identities=18% Similarity=0.369 Sum_probs=34.7
Q ss_pred CCCccEEEEccccccCC----------hhHHHHHHHHHHHccCCC-EEEEEecCCc
Q 002218 792 LHGFDIGTCLEVIEHME----------EDEASQFGNIVLSSFRPR-ILIVSTPNYE 836 (952)
Q Consensus 792 d~sFDVVVcieVIEHL~----------dD~l~~L~eeI~RvLKPG-~LIISTPN~e 836 (952)
.++||.+.|..+|||+. ..+...+. .+.++|||| .+++++|-..
T Consensus 61 ~~~fD~~as~~siEh~GLGRYGDPidp~Gdl~~m~-~i~~vLK~GG~L~l~vPvG~ 115 (177)
T PF03269_consen 61 AGSFDFAASFSSIEHFGLGRYGDPIDPIGDLRAMA-KIKCVLKPGGLLFLGVPVGT 115 (177)
T ss_pred hccchhhheechhccccccccCCCCCccccHHHHH-HHHHhhccCCeEEEEeecCC
Confidence 46799999999999995 12344555 589999999 9999999653
No 341
>PF11312 DUF3115: Protein of unknown function (DUF3115); InterPro: IPR021463 This eukaryotic family of proteins has no known function.
Probab=58.84 E-value=16 Score=41.71 Aligned_cols=120 Identities=21% Similarity=0.191 Sum_probs=69.6
Q ss_pred CEEEEEcCccchHHHHHhcCC-------------------CCCceEEEEeCChH--HHHHHHHHHhhh--hhcccccCCC
Q 002218 715 TTLVDFGCGSGSLLDSLLDYP-------------------TALEKIVGVDISQK--SLSRAAKIIHSK--LSKKLDAAVP 771 (952)
Q Consensus 715 krVLDIGCGeG~ll~~LAr~g-------------------~~~~qVVGVDISee--mLe~ArkrLsa~--la~~~~~l~P 771 (952)
.+||-||-|-|.=+..|+... .+...|+.|||.+- .++.-...+... +..+ ..+.+
T Consensus 88 ~~VlCIGGGAGAElVAlAa~~~~~~~~~~s~~~~~~~~~~~~~l~itlvDiAdWs~VV~~L~~~i~s~p~~sk~-a~~~~ 166 (315)
T PF11312_consen 88 LRVLCIGGGAGAELVALAAAFRTRSSEFLSKSPSGVSLSSPPSLSITLVDIADWSSVVDRLTTTITSPPPLSKY-ASAAN 166 (315)
T ss_pred ceEEEECCChHHHHHHHHHHHhhcccccCCcccccccccCCCcceEEEEEecChHHHHHHHHHhccCCCCcccc-ccccc
Confidence 699999999977665554221 01138999999873 333333222211 0000 00000
Q ss_pred ----CCCCccEEEEEcCccccCCCC-------CCccEEEEccccccCCh---hHHHHHHHHHHHccCCC--EEEEEecCC
Q 002218 772 ----CTDVKSAVLFDGSITVFDSRL-------HGFDIGTCLEVIEHMEE---DEASQFGNIVLSSFRPR--ILIVSTPNY 835 (952)
Q Consensus 772 ----r~~~~nVtf~qGDa~dLpf~d-------~sFDVVVcieVIEHL~d---D~l~~L~eeI~RvLKPG--~LIISTPN~ 835 (952)
.....+++|.+.|+..+...+ ...|+|+..+.+.-+-- ..-..|...+-..++|| .+|+..|..
T Consensus 167 ~~~~~~~~~~~~F~~~DvL~~~~~~l~~ll~~~~~~LITLlFTlNELfs~s~~kTt~FLl~Lt~~~~~GslLLVvDSpGS 246 (315)
T PF11312_consen 167 WPLIEPDRFNVSFTQQDVLSLSEDDLKSLLGPPSPDLITLLFTLNELFSTSISKTTKFLLRLTDICPPGSLLLVVDSPGS 246 (315)
T ss_pred cccCCccceeeeEEecccccCChHHHHHHhccchhHHHHHHHHHHHHHhcChHHHHHHHHHHHhhcCCCcEEEEEcCCCC
Confidence 123457999999998876532 24788888776644321 12234445699999999 556666653
No 342
>PF11899 DUF3419: Protein of unknown function (DUF3419); InterPro: IPR021829 This family of proteins are functionally uncharacterised. This protein is found in bacteria and eukaryotes. Proteins in this family are typically between 398 to 802 amino acids in length.
Probab=58.72 E-value=13 Score=43.23 Aligned_cols=57 Identities=12% Similarity=0.102 Sum_probs=49.7
Q ss_pred CCccEEEEEcCccccCC--CCCCccEEEEccccccCChhHHHHHHHHHHHccCCC-EEEE
Q 002218 774 DVKSAVLFDGSITVFDS--RLHGFDIGTCLEVIEHMEEDEASQFGNIVLSSFRPR-ILIV 830 (952)
Q Consensus 774 ~~~nVtf~qGDa~dLpf--~d~sFDVVVcieVIEHL~dD~l~~L~eeI~RvLKPG-~LII 830 (952)
+..+|++.++++.+.-- +.+++|.++.++..++|+++......+++.+.++|| .++.
T Consensus 273 ~~drv~i~t~si~~~L~~~~~~s~~~~vL~D~~Dwm~~~~~~~~~~~l~~~~~pgaRV~~ 332 (380)
T PF11899_consen 273 RLDRVRIHTDSIEEVLRRLPPGSFDRFVLSDHMDWMDPEQLNEEWQELARTARPGARVLW 332 (380)
T ss_pred CCCeEEEEeccHHHHHHhCCCCCeeEEEecchhhhCCHHHHHHHHHHHHHHhCCCCEEEE
Confidence 45799999999988543 468999999999999999999999999999999999 6665
No 343
>PRK07066 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=57.35 E-value=1.5e+02 Score=33.84 Aligned_cols=159 Identities=13% Similarity=0.038 Sum_probs=80.6
Q ss_pred CCEEEEEcCcc--chHHHHHhcCCCCCceEEEEeCChHHHHHHHHHHhhhhhccccc-CCCCCCCccEEEEEcCccccCC
Q 002218 714 ATTLVDFGCGS--GSLLDSLLDYPTALEKIVGVDISQKSLSRAAKIIHSKLSKKLDA-AVPCTDVKSAVLFDGSITVFDS 790 (952)
Q Consensus 714 ~krVLDIGCGe--G~ll~~LAr~g~~~~qVVGVDISeemLe~ArkrLsa~la~~~~~-l~Pr~~~~nVtf~qGDa~dLpf 790 (952)
.++|.=||+|. ..++..++..| .+|+..|++++.++.+++++...+...... ..+.....++++.. ++.+
T Consensus 7 i~~VaVIGaG~MG~giA~~~a~aG---~~V~l~D~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~i~~~~-~l~~--- 79 (321)
T PRK07066 7 IKTFAAIGSGVIGSGWVARALAHG---LDVVAWDPAPGAEAALRANVANAWPALERQGLAPGASPARLRFVA-TIEA--- 79 (321)
T ss_pred CCEEEEECcCHHHHHHHHHHHhCC---CeEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCChhhHHhhceecC-CHHH---
Confidence 46888999994 33445567777 899999999999888776554332221000 00001112233221 2211
Q ss_pred CCCCccEEEEccccccCChh--HHHHHHHHHHHccCCCEEEEE-ecCCchhHHHHhhccCccCCCCcchhhhccccccCC
Q 002218 791 RLHGFDIGTCLEVIEHMEED--EASQFGNIVLSSFRPRILIVS-TPNYEYNAILQKSSSTIQEDDPDEKTQLQSCKFRNH 867 (952)
Q Consensus 791 ~d~sFDVVVcieVIEHL~dD--~l~~L~eeI~RvLKPG~LIIS-TPN~efN~lf~~L~~~ta~eYPde~~g~~~~~fRh~ 867 (952)
.....|+|+ |.++++ ..+.+.+++.+.++|+.+|-+ |-...-..+...+ ..|..-. ...|-++
T Consensus 80 av~~aDlVi-----EavpE~l~vK~~lf~~l~~~~~~~aIlaSnTS~l~~s~la~~~------~~p~R~~---g~HffnP 145 (321)
T PRK07066 80 CVADADFIQ-----ESAPEREALKLELHERISRAAKPDAIIASSTSGLLPTDFYARA------THPERCV---VGHPFNP 145 (321)
T ss_pred HhcCCCEEE-----ECCcCCHHHHHHHHHHHHHhCCCCeEEEECCCccCHHHHHHhc------CCcccEE---EEecCCc
Confidence 124556654 444432 234455679999999953332 2221111222211 1111000 1112233
Q ss_pred CCc--------cccCHHHHHHHHHHHHHHcCcEE
Q 002218 868 DHK--------FEWTRDQFNCWATELAARHNYSV 893 (952)
Q Consensus 868 DHk--------FEWTReEFqsWae~La~q~GYsV 893 (952)
-|. -.+|..+...++..++.+.|...
T Consensus 146 ~~~~pLVEVv~g~~T~~e~~~~~~~f~~~lGk~p 179 (321)
T PRK07066 146 VYLLPLVEVLGGERTAPEAVDAAMGIYRALGMRP 179 (321)
T ss_pred cccCceEEEeCCCCCCHHHHHHHHHHHHHcCCEe
Confidence 332 23677777777888888777543
No 344
>PF00145 DNA_methylase: C-5 cytosine-specific DNA methylase; InterPro: IPR001525 C-5 cytosine-specific DNA methylases (2.1.1.37 from EC) (C5 Mtase) are enzymes that specifically methylate the C-5 carbon of cytosines in DNA to produce C5-methylcytosine [, , ]. In mammalian cells, cytosine-specific methyltransferases methylate certain CpG sequences, which are believed to modulate gene expression and cell differentiation. In bacteria, these enzymes are a component of restriction-modification systems and serve as valuable tools for the manipulation of DNA [, ]. The structure of HhaI methyltransferase (M.HhaI) has been resolved to 2.5 A []: the molecule folds into 2 domains - a larger catalytic domain containing catalytic and cofactor binding sites, and a smaller DNA recognition domain.; GO: 0003677 DNA binding, 0006306 DNA methylation; PDB: 4DA4_A 3PT6_B 3AV6_A 3AV5_A 3AV4_A 3PT9_A 1DCT_A 3LX6_A 3ME5_A 2QRV_A ....
Probab=56.75 E-value=22 Score=38.39 Aligned_cols=64 Identities=20% Similarity=0.225 Sum_probs=48.6
Q ss_pred EEEEEcCccchHHHHHhcCCCCCceEEEEeCChHHHHHHHHHHhhhhhcccccCCCCCCCccEEEEEcCccccCCC-CC-
Q 002218 716 TLVDFGCGSGSLLDSLLDYPTALEKIVGVDISQKSLSRAAKIIHSKLSKKLDAAVPCTDVKSAVLFDGSITVFDSR-LH- 793 (952)
Q Consensus 716 rVLDIGCGeG~ll~~LAr~g~~~~qVVGVDISeemLe~ArkrLsa~la~~~~~l~Pr~~~~nVtf~qGDa~dLpf~-d~- 793 (952)
+++|+=||-|.+...|.+.| ...+.++|+++.+.+.-+.+. . ....+|+.+++.. ..
T Consensus 2 ~~~dlFsG~Gg~~~g~~~ag--~~~~~a~e~~~~a~~~y~~N~------------------~-~~~~~Di~~~~~~~l~~ 60 (335)
T PF00145_consen 2 KVIDLFSGIGGFSLGLEQAG--FEVVWAVEIDPDACETYKANF------------------P-EVICGDITEIDPSDLPK 60 (335)
T ss_dssp EEEEET-TTTHHHHHHHHTT--EEEEEEEESSHHHHHHHHHHH------------------T-EEEESHGGGCHHHHHHH
T ss_pred cEEEEccCccHHHHHHHhcC--cEEEEEeecCHHHHHhhhhcc------------------c-ccccccccccccccccc
Confidence 78999999999999998887 467899999999888876653 1 6777888876632 11
Q ss_pred CccEEEE
Q 002218 794 GFDIGTC 800 (952)
Q Consensus 794 sFDVVVc 800 (952)
.+|+++.
T Consensus 61 ~~D~l~g 67 (335)
T PF00145_consen 61 DVDLLIG 67 (335)
T ss_dssp T-SEEEE
T ss_pred cceEEEe
Confidence 5899887
No 345
>cd08037 LARP_1 La RNA-binding domain of La-related protein 1. This domain is found in vertebrate La-related protein 1 (LARP1). A variety of La-related proteins (LARPs or La ribonucleoproteins), with differing domain architecture, appear to function as RNA-binding proteins in eukaryotic cellular processes.
Probab=56.65 E-value=3 Score=38.05 Aligned_cols=69 Identities=20% Similarity=0.255 Sum_probs=50.0
Q ss_pred HHHHHHHhhhhcccccccCCCchhhhHHhhhhcCcccccccceEEEeecccccccccccCcccccchHHHHHHHHHHhhc
Q 002218 108 DKLIASVKHLFSNEFLSSQSPLRGHFIAALRRDGDLYGSVPASVIAVCDSKLANLCKLINPKVESSHLLVLTYIMRAATR 187 (952)
Q Consensus 108 ~~l~~~~~~~f~~e~~~~~~pl~~h~~~~~~r~g~~~g~~p~~~~~~~d~k~~~~ck~~~~~~e~~p~~~~~~~~~a~~~ 187 (952)
|.|+..|.|-|||+=|..+.=|..|+- . =|-||+++||.+- |+.++- . | +.+|..|.+.
T Consensus 2 ~~I~~QvEyYFSd~NL~~D~fLr~~md------~--dG~Vpi~~ia~F~-rmk~Lt----~----d----~~~I~~Al~~ 60 (73)
T cd08037 2 DYIKRQIEYYFSVDNLERDFFLRRKMD------E--DGFLPVTLIASFH-RVQALT----T----D----ISLIIKALKD 60 (73)
T ss_pred hHHHHHHHHhccHhhhccCHHHHHHhc------c--CCCEeHHHHhcch-HHHHhc----C----C----HHHHHHHHHc
Confidence 678999999999999988887877762 2 3999999999874 333332 1 2 3567777776
Q ss_pred cCCcEEeecCc
Q 002218 188 LSEFVVTSEGQ 198 (952)
Q Consensus 188 ~~~~~~~s~~~ 198 (952)
++- |-+++..
T Consensus 61 S~~-vev~~~~ 70 (73)
T cd08037 61 SKV-VEIIDMK 70 (73)
T ss_pred CCe-EEEecch
Confidence 554 7777663
No 346
>PF04072 LCM: Leucine carboxyl methyltransferase; InterPro: IPR007213 This entry represents a group of leucine carboxymethyltransferases which methylate the carboxyl group of leucine residues to form alpha-leucine ester residues. It includes LCTM1 which regulates the activity of serine/threonine phosphatase 2A (PP2A) through methylation of the C-terminal leucine residue of the catalytic subunit of PP2A [, , ]. This affects the heteromultimeric composition of PP2A which in turn affects protein recognition and substrate specificity. Like many other methyltransferases LCTM1 uses S-adenosylmethionine (SAM) as the methyl donor. LCTM1 contains the common SAM-dependent methyltransferase core fold, with various insertions and additions creating a specific PP2A binding site []. This entry also contains LCTM2, a homologue of LCTM1 which is not necessary for PP2A methylation and whose function is not clear.; GO: 0008168 methyltransferase activity; PDB: 2UYQ_A 2CKD_B 2UYO_A 2ZZK_B 2ZWA_B 2ZW9_B 1RJE_C 2OB2_B 1RJF_A 1RJD_A ....
Probab=56.62 E-value=84 Score=32.39 Aligned_cols=110 Identities=8% Similarity=0.072 Sum_probs=63.4
Q ss_pred HHHHHHHHHHhh----cCCC-CEEEEEcCccchHHHHHhcCCCCCceEEEEeCChHHHHHHHHHHhhhhhcccccCCCCC
Q 002218 699 KQRVEYALQHIK----ESCA-TTLVDFGCGSGSLLDSLLDYPTALEKIVGVDISQKSLSRAAKIIHSKLSKKLDAAVPCT 773 (952)
Q Consensus 699 ~QR~efVldlL~----~~k~-krVLDIGCGeG~ll~~LAr~g~~~~qVVGVDISeemLe~ArkrLsa~la~~~~~l~Pr~ 773 (952)
..|..++-+.+. ..++ ..|+.+|||-=.....+.... +..+++-||. +++++.-++.+......
T Consensus 59 ~~Rt~~iD~~v~~~i~~~~~~~qvV~LGaGlDTr~~Rl~~~~-~~~~~~evD~-p~v~~~K~~~l~~~~~~--------- 127 (183)
T PF04072_consen 59 AARTRYIDDAVREFIAKHPGARQVVNLGAGLDTRAYRLDNPA-GGVRWFEVDL-PEVIALKRRLLPESGAR--------- 127 (183)
T ss_dssp HHHHHHHHHHHHHHHHHHTTESEEEEET-TT--HHHHHHHTT-TTEEEEEEE--HHHHHHHHHHHHHTHHH---------
T ss_pred HHHHHHHHHHHHHhhccCCCCcEEEEcCCCCCchHHHhhccc-cceEEEEeCC-HHHHHHHHHHHHhCccc---------
Confidence 346666554443 3344 489999999888777777643 1378888885 56666666665432111
Q ss_pred CCccEEEEEcCccccCC---------CCCCccEEEEccccccCChhHHHHHHHHH
Q 002218 774 DVKSAVLFDGSITVFDS---------RLHGFDIGTCLEVIEHMEEDEASQFGNIV 819 (952)
Q Consensus 774 ~~~nVtf~qGDa~dLpf---------~d~sFDVVVcieVIEHL~dD~l~~L~eeI 819 (952)
...+.+++.+|+.+... ....--++++-+|+.+++++....+.+.+
T Consensus 128 ~~~~~~~v~~Dl~~~~~~~~L~~~g~~~~~ptl~i~Egvl~Yl~~~~~~~ll~~i 182 (183)
T PF04072_consen 128 PPANYRYVPADLRDDSWIDALPKAGFDPDRPTLFIAEGVLMYLSPEQVDALLRAI 182 (183)
T ss_dssp HHEESSEEES-TTSHHHHHHHHHCTT-TTSEEEEEEESSGGGS-HHHHHHHHHHH
T ss_pred CCcceeEEeccccchhhHHHHHHhCCCCCCCeEEEEcchhhcCCHHHHHHHHHHh
Confidence 01245578888876321 12334477788899999988776665543
No 347
>PRK07819 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=55.21 E-value=27 Score=38.71 Aligned_cols=106 Identities=8% Similarity=0.074 Sum_probs=59.9
Q ss_pred CEEEEEcCcc--chHHHHHhcCCCCCceEEEEeCChHHHHHHHHHHhhhhhcccccCCCC-----CCCccEEEEEcCccc
Q 002218 715 TTLVDFGCGS--GSLLDSLLDYPTALEKIVGVDISQKSLSRAAKIIHSKLSKKLDAAVPC-----TDVKSAVLFDGSITV 787 (952)
Q Consensus 715 krVLDIGCGe--G~ll~~LAr~g~~~~qVVGVDISeemLe~ArkrLsa~la~~~~~l~Pr-----~~~~nVtf~qGDa~d 787 (952)
.+|-=||+|. +..+..++..| .+|+.+|.+++.++.+.+++...++.......-. ....++++ ..|...
T Consensus 6 ~~V~ViGaG~mG~~iA~~~a~~G---~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~l~~-~~~~~~ 81 (286)
T PRK07819 6 QRVGVVGAGQMGAGIAEVCARAG---VDVLVFETTEELATAGRNRIEKSLERAVSRGKLTERERDAALARLRF-TTDLGD 81 (286)
T ss_pred cEEEEEcccHHHHHHHHHHHhCC---CEEEEEECCHHHHHHHHHHHHHHHHHHHhcccCChhhHHHHHhCeEe-eCCHHH
Confidence 4788899984 33455667777 8999999999999998877665443321110000 00112322 223322
Q ss_pred cCCCCCCccEEEEccccccCChhHHHHHHHHHHHcc-CCCEEEEE
Q 002218 788 FDSRLHGFDIGTCLEVIEHMEEDEASQFGNIVLSSF-RPRILIVS 831 (952)
Q Consensus 788 Lpf~d~sFDVVVcieVIEHL~dD~l~~L~eeI~RvL-KPG~LIIS 831 (952)
....|+|+-. +.|.+. ..+.+...+-+++ +|+.++.+
T Consensus 82 ----~~~~d~ViEa-v~E~~~--~K~~l~~~l~~~~~~~~~il~s 119 (286)
T PRK07819 82 ----FADRQLVIEA-VVEDEA--VKTEIFAELDKVVTDPDAVLAS 119 (286)
T ss_pred ----hCCCCEEEEe-cccCHH--HHHHHHHHHHHhhCCCCcEEEE
Confidence 2456776544 334443 2234445678888 78855444
No 348
>PLN02668 indole-3-acetate carboxyl methyltransferase
Probab=55.20 E-value=86 Score=36.92 Aligned_cols=95 Identities=14% Similarity=0.060 Sum_probs=49.3
Q ss_pred CCEEEEEcCccchHHHHHh--------cC------CCCCceEEEEeCChHHHHHHHHHHhhhhhc---ccccCC-CCCCC
Q 002218 714 ATTLVDFGCGSGSLLDSLL--------DY------PTALEKIVGVDISQKSLSRAAKIIHSKLSK---KLDAAV-PCTDV 775 (952)
Q Consensus 714 ~krVLDIGCGeG~ll~~LA--------r~------g~~~~qVVGVDISeemLe~ArkrLsa~la~---~~~~l~-Pr~~~ 775 (952)
..+|+|+|||+|.++..+. ++ ..+..+|+.=|.-..=-...-+.+...... ...++. +....
T Consensus 64 ~~~iaDlGcs~G~ntl~~vs~iI~~i~~~~~~~~~~~pe~qv~~nDLP~NDFNtlF~~L~~~~~~~~~~~~~~~~~~~~~ 143 (386)
T PLN02668 64 PFTAVDLGCSSGSNTIHIIDVIVKHMSKRYESAGLDPPEFSAFFSDLPSNDFNTLFQLLPPLANYGGSMEECLAASGHRS 143 (386)
T ss_pred ceeEEEecCCCCccHHHHHHHHHHHHHHHhhhcCCCCCcceEEecCCCCCCHHHHHhhchhhhhhhcchhhhccccCCCc
Confidence 5689999999998774332 11 112367777775442211111122110000 000000 00000
Q ss_pred ccEEEEEcCccccCCCCCCccEEEEccccccCC
Q 002218 776 KSAVLFDGSITVFDSRLHGFDIGTCLEVIEHME 808 (952)
Q Consensus 776 ~nVtf~qGDa~dLpf~d~sFDVVVcieVIEHL~ 808 (952)
-=+.-+-|+.-.--++.++.+++.+...+||+.
T Consensus 144 ~f~~gvpGSFY~RLfP~~Slh~~~Ss~slHWLS 176 (386)
T PLN02668 144 YFAAGVPGSFYRRLFPARSIDVFHSAFSLHWLS 176 (386)
T ss_pred eEEEecCccccccccCCCceEEEEeeccceecc
Confidence 012223356666667889999999999999997
No 349
>PRK09880 L-idonate 5-dehydrogenase; Provisional
Probab=54.63 E-value=74 Score=35.38 Aligned_cols=45 Identities=27% Similarity=0.305 Sum_probs=33.3
Q ss_pred cCCCCEEEEEcCc-cchHHHHHhcCCCCCceEEEEeCChHHHHHHHH
Q 002218 711 ESCATTLVDFGCG-SGSLLDSLLDYPTALEKIVGVDISQKSLSRAAK 756 (952)
Q Consensus 711 ~~k~krVLDIGCG-eG~ll~~LAr~g~~~~qVVGVDISeemLe~Ark 756 (952)
..++.+||=.||| .|.++..+++..+ ..+|+++|.+++-++.+++
T Consensus 167 ~~~g~~VlV~G~G~vG~~aiqlak~~G-~~~Vi~~~~~~~~~~~a~~ 212 (343)
T PRK09880 167 DLQGKRVFVSGVGPIGCLIVAAVKTLG-AAEIVCADVSPRSLSLARE 212 (343)
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHcC-CcEEEEEeCCHHHHHHHHH
Confidence 3467899999987 4666666776542 2479999999999988865
No 350
>KOG2920 consensus Predicted methyltransferase [General function prediction only]
Probab=54.60 E-value=9.1 Score=42.98 Aligned_cols=39 Identities=13% Similarity=0.128 Sum_probs=32.5
Q ss_pred CCCCEEEEEcCccchHHHHHhcCCCCCceEEEEeCChHHHH
Q 002218 712 SCATTLVDFGCGSGSLLDSLLDYPTALEKIVGVDISQKSLS 752 (952)
Q Consensus 712 ~k~krVLDIGCGeG~ll~~LAr~g~~~~qVVGVDISeemLe 752 (952)
..+++|||+|||.|.........+. ..+...|++.+.++
T Consensus 115 ~~~k~vLELgCg~~Lp~i~~~~~~~--~~~~fqD~na~vl~ 153 (282)
T KOG2920|consen 115 FSGKRVLELGCGAALPGIFAFVKGA--VSVHFQDFNAEVLR 153 (282)
T ss_pred ecCceeEecCCcccccchhhhhhcc--ceeeeEecchhhee
Confidence 4679999999999999887777663 78889999988874
No 351
>COG1565 Uncharacterized conserved protein [Function unknown]
Probab=53.70 E-value=27 Score=40.74 Aligned_cols=80 Identities=14% Similarity=0.119 Sum_probs=51.1
Q ss_pred CCCEEEEEcCccchHHHHHhcCCC-------CCceEEEEeCChHHHHHHHHHHhhhhhcccccCCCCCCCccEEEEEcCc
Q 002218 713 CATTLVDFGCGSGSLLDSLLDYPT-------ALEKIVGVDISQKSLSRAAKIIHSKLSKKLDAAVPCTDVKSAVLFDGSI 785 (952)
Q Consensus 713 k~krVLDIGCGeG~ll~~LAr~g~-------~~~qVVGVDISeemLe~ArkrLsa~la~~~~~l~Pr~~~~nVtf~qGDa 785 (952)
.+..++++|.|+|.++.-+++... ...++.-|++|++..+.-++.+.... ..+.+. --.
T Consensus 77 ~~~~lvEiGaG~G~l~~DiL~~l~~L~P~~~~~~~~~iiE~s~~L~~~Qk~~L~~~~-------------~~~~~~-~~~ 142 (370)
T COG1565 77 APLKLVEIGAGRGTLASDILRTLRRLYPELYEALSYYIIEPSPELRARQKETLKATE-------------DLIRWV-EWV 142 (370)
T ss_pred CCceEEEeCCCcChHHHHHHHHHHHhCHHHHhcceEEEEecCHHHHHHHHHHHhccc-------------cchhHH-HHH
Confidence 456899999999999976654320 12689999999999988877765310 111111 111
Q ss_pred cccCCCCCCccEEEEccccccCC
Q 002218 786 TVFDSRLHGFDIGTCLEVIEHME 808 (952)
Q Consensus 786 ~dLpf~d~sFDVVVcieVIEHL~ 808 (952)
+++| ....-+|+++|++.-+|
T Consensus 143 e~~p--~~~~~i~~~NElfDAlP 163 (370)
T COG1565 143 EDLP--KKFPGIVVSNELFDALP 163 (370)
T ss_pred Hhcc--ccCceEEEechhhcccc
Confidence 2222 22356778888887777
No 352
>COG1047 SlpA FKBP-type peptidyl-prolyl cis-trans isomerases 2 [Posttranslational modification, protein turnover, chaperones]
Probab=52.97 E-value=23 Score=37.30 Aligned_cols=61 Identities=23% Similarity=0.506 Sum_probs=51.3
Q ss_pred CCCceeEEEEEEEEeecccchhhhhcccc----ceEEEeccCccchhhhhhhhhccccccceecccCCchhh
Q 002218 582 SNGCLSFISYSVSLVIEGETMKELLESRE----EFEFEMGTGAVIPQVEVVTAQMSVGQSACFCKELPPQEL 649 (952)
Q Consensus 582 ~~gs~~~i~y~~~l~~~~~~~~~~~e~~~----~~~fe~g~~a~~~~l~~v~~q~sv~q~~~~~~~l~~~~l 649 (952)
.+|+.+.|.|++.+.. | +++++.. .+.|-+|.|...+-|+..+--|.+|+-..+. +||++-
T Consensus 4 ~k~~~V~i~Y~~~~~d-g----~v~Dtt~e~~~P~~~i~G~g~li~glE~al~g~~~Ge~~~V~--IpPE~A 68 (174)
T COG1047 4 EKGDVVSLHYTLKVED-G----EVVDTTDENYGPLTFIVGAGQLIPGLEEALLGKEVGEEFTVE--IPPEDA 68 (174)
T ss_pred cCCCEEEEEEEEEecC-C----cEEEcccccCCCeEEEecCCCcchhHHHHHhCCCCCceeEEE--eCchHh
Confidence 5799999999999877 5 4666654 4899999999999999999999999987665 666653
No 353
>PLN02545 3-hydroxybutyryl-CoA dehydrogenase
Probab=52.93 E-value=1.2e+02 Score=33.41 Aligned_cols=42 Identities=17% Similarity=0.141 Sum_probs=32.0
Q ss_pred CEEEEEcCcc--chHHHHHhcCCCCCceEEEEeCChHHHHHHHHHHh
Q 002218 715 TTLVDFGCGS--GSLLDSLLDYPTALEKIVGVDISQKSLSRAAKIIH 759 (952)
Q Consensus 715 krVLDIGCGe--G~ll~~LAr~g~~~~qVVGVDISeemLe~ArkrLs 759 (952)
++|.=||+|. ..++..++..+ .+|+++|.+++.++.+++++.
T Consensus 5 ~~V~vIG~G~mG~~iA~~l~~~G---~~V~~~d~~~~~~~~~~~~~~ 48 (295)
T PLN02545 5 KKVGVVGAGQMGSGIAQLAAAAG---MDVWLLDSDPAALSRGLDSIS 48 (295)
T ss_pred CEEEEECCCHHHHHHHHHHHhcC---CeEEEEeCCHHHHHHHHHHHH
Confidence 5688899984 33556666766 799999999999988776654
No 354
>PRK01747 mnmC bifunctional tRNA (mnm(5)s(2)U34)-methyltransferase/FAD-dependent cmnm(5)s(2)U34 oxidoreductase; Reviewed
Probab=52.89 E-value=56 Score=40.30 Aligned_cols=118 Identities=10% Similarity=-0.039 Sum_probs=61.8
Q ss_pred CCCEEEEEcCccchHHHHHhcC-------CC----CCceEEEEeCCh---HHHHHHHHHHh---hhhhcccccCCC-C--
Q 002218 713 CATTLVDFGCGSGSLLDSLLDY-------PT----ALEKIVGVDISQ---KSLSRAAKIIH---SKLSKKLDAAVP-C-- 772 (952)
Q Consensus 713 k~krVLDIGCGeG~ll~~LAr~-------g~----~~~qVVGVDISe---emLe~ArkrLs---a~la~~~~~l~P-r-- 772 (952)
+.-+|+|+|-|+|.......+. .+ ..-+++++|..+ +-+..+-+... ...+...+...+ .
T Consensus 57 ~~~~i~e~gfG~G~N~l~~~~~~~~~~~~~~~~~~~~l~~~s~E~~p~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~g 136 (662)
T PRK01747 57 RRFVIAETGFGTGLNFLATWQAFDQFRQRHPPARLKRLHFISFEKFPLTRADLARAHQHWPELAPLAEQLQAQWPLLLPG 136 (662)
T ss_pred CcEEEEecCcchHHHHHHHHHHHHHhhhhCCCCCCceEEEEEEECCCCCHHHHHHHHhhCcccHHHHHHHHHhCCccCCC
Confidence 3468999999999976544321 11 125799999643 44443321110 000000000000 0
Q ss_pred -------CCCccEEEEEcCccccCCC-CCCccEEEEccc-cccCChhHHHHHHHHHHHccCCCEEEE
Q 002218 773 -------TDVKSAVLFDGSITVFDSR-LHGFDIGTCLEV-IEHMEEDEASQFGNIVLSSFRPRILIV 830 (952)
Q Consensus 773 -------~~~~nVtf~qGDa~dLpf~-d~sFDVVVcieV-IEHL~dD~l~~L~eeI~RvLKPG~LII 830 (952)
.+.-+++++.||+.+.-.. ...||+++.-.. --+-++---..+.+.|+++++||..+.
T Consensus 137 ~~~~~~~~~~~~l~l~~gd~~~~~~~~~~~~d~~~lD~FsP~~np~~W~~~~~~~l~~~~~~~~~~~ 203 (662)
T PRK01747 137 CHRLLFDDGRVTLDLWFGDANELLPQLDARADAWFLDGFAPAKNPDMWSPNLFNALARLARPGATLA 203 (662)
T ss_pred ceEEEecCCcEEEEEEecCHHHHHHhccccccEEEeCCCCCccChhhccHHHHHHHHHHhCCCCEEE
Confidence 1112567888998764332 246999986433 222222222455567999999994333
No 355
>COG0569 TrkA K+ transport systems, NAD-binding component [Inorganic ion transport and metabolism]
Probab=52.34 E-value=1.2e+02 Score=32.67 Aligned_cols=105 Identities=17% Similarity=0.148 Sum_probs=66.9
Q ss_pred CEEEEEcCcc--chHHHHHhcCCCCCceEEEEeCChHHHHHHHHHHhhhhhcccccCCCCCCCccEEEEEcCccccCC--
Q 002218 715 TTLVDFGCGS--GSLLDSLLDYPTALEKIVGVDISQKSLSRAAKIIHSKLSKKLDAAVPCTDVKSAVLFDGSITVFDS-- 790 (952)
Q Consensus 715 krVLDIGCGe--G~ll~~LAr~g~~~~qVVGVDISeemLe~ArkrLsa~la~~~~~l~Pr~~~~nVtf~qGDa~dLpf-- 790 (952)
++++=+|||. +.++..|.+.| ..|+.||.+++.++..... ......+++|..+...
T Consensus 1 m~iiIiG~G~vG~~va~~L~~~g---~~Vv~Id~d~~~~~~~~~~-----------------~~~~~~v~gd~t~~~~L~ 60 (225)
T COG0569 1 MKIIIIGAGRVGRSVARELSEEG---HNVVLIDRDEERVEEFLAD-----------------ELDTHVVIGDATDEDVLE 60 (225)
T ss_pred CEEEEECCcHHHHHHHHHHHhCC---CceEEEEcCHHHHHHHhhh-----------------hcceEEEEecCCCHHHHH
Confidence 3677889984 44556777777 7999999999988774321 0256788888877542
Q ss_pred --CCCCccEEEEccccccCChhHHHHHHHHHHHc-cCCCEEEEEecCCchhHHHHhh
Q 002218 791 --RLHGFDIGTCLEVIEHMEEDEASQFGNIVLSS-FRPRILIVSTPNYEYNAILQKS 844 (952)
Q Consensus 791 --~d~sFDVVVcieVIEHL~dD~l~~L~eeI~Rv-LKPG~LIISTPN~efN~lf~~L 844 (952)
....+|+++..-- .+....+.-.+..- +..-.++.-..|.++...+..+
T Consensus 61 ~agi~~aD~vva~t~-----~d~~N~i~~~la~~~~gv~~viar~~~~~~~~~~~~~ 112 (225)
T COG0569 61 EAGIDDADAVVAATG-----NDEVNSVLALLALKEFGVPRVIARARNPEHEKVLEKL 112 (225)
T ss_pred hcCCCcCCEEEEeeC-----CCHHHHHHHHHHHHhcCCCcEEEEecCHHHHHHHHHc
Confidence 2457898887422 24444444334433 3222777777777777666543
No 356
>PF07279 DUF1442: Protein of unknown function (DUF1442); InterPro: IPR009902 This family consists of several hypothetical Arabidopsis thaliana proteins of around 225 residues in length. The function of this family is unknown.
Probab=50.96 E-value=1.1e+02 Score=33.60 Aligned_cols=86 Identities=16% Similarity=0.074 Sum_probs=55.3
Q ss_pred HHHHHHhhcCCCCEEEEEcCccch--HHHHH--hcCCCCCceEEEEeCChHHHHHHHHHHhhhhhcccccCCCCCCCccE
Q 002218 703 EYALQHIKESCATTLVDFGCGSGS--LLDSL--LDYPTALEKIVGVDISQKSLSRAAKIIHSKLSKKLDAAVPCTDVKSA 778 (952)
Q Consensus 703 efVldlL~~~k~krVLDIGCGeG~--ll~~L--Ar~g~~~~qVVGVDISeemLe~ArkrLsa~la~~~~~l~Pr~~~~nV 778 (952)
+||..+....+.+.++++.|+.|. .+..| |.+. ...+++.|-.+++.+...++.+... .....+
T Consensus 31 EfISAlAAG~nAkliVe~~s~g~~~~ttiaLaaAAr~-TgGR~vCIvp~~~~~~~~~~~l~~~-----------~~~~~v 98 (218)
T PF07279_consen 31 EFISALAAGWNAKLIVEAWSSGGAISTTIALAAAARQ-TGGRHVCIVPDEQSLSEYKKALGEA-----------GLSDVV 98 (218)
T ss_pred HHHHHHhccccceEEEEEecCCCchHhHHHHHHHHHh-cCCeEEEEcCChhhHHHHHHHHhhc-----------cccccc
Confidence 588777777788999999776543 23333 2221 1279999999988877776665421 112357
Q ss_pred EEEEcCc-cccCCCCCCccEEEE
Q 002218 779 VLFDGSI-TVFDSRLHGFDIGTC 800 (952)
Q Consensus 779 tf~qGDa-~dLpf~d~sFDVVVc 800 (952)
+|+.|+. +++-....+.|.++.
T Consensus 99 Efvvg~~~e~~~~~~~~iDF~vV 121 (218)
T PF07279_consen 99 EFVVGEAPEEVMPGLKGIDFVVV 121 (218)
T ss_pred eEEecCCHHHHHhhccCCCEEEE
Confidence 8988885 444445667787754
No 357
>PRK05808 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=50.94 E-value=3.3e+02 Score=29.82 Aligned_cols=162 Identities=15% Similarity=0.119 Sum_probs=80.5
Q ss_pred CEEEEEcCcc--chHHHHHhcCCCCCceEEEEeCChHHHHHHHHHHhhhhhcccccC--CCC---CCCccEEEEEcCccc
Q 002218 715 TTLVDFGCGS--GSLLDSLLDYPTALEKIVGVDISQKSLSRAAKIIHSKLSKKLDAA--VPC---TDVKSAVLFDGSITV 787 (952)
Q Consensus 715 krVLDIGCGe--G~ll~~LAr~g~~~~qVVGVDISeemLe~ArkrLsa~la~~~~~l--~Pr---~~~~nVtf~qGDa~d 787 (952)
.+|.=||+|. +.++..+++.+ .+|+++|++++.++.+.+++.+.++...+.. ... ....++++ ..|..
T Consensus 4 ~kI~VIG~G~mG~~ia~~la~~g---~~V~~~d~~~~~~~~~~~~i~~~l~~~~~~g~~~~~~~~~~~~~l~~-~~~~~- 78 (282)
T PRK05808 4 QKIGVIGAGTMGNGIAQVCAVAG---YDVVMVDISDAAVDRGLATITKSLDRLVKKGKMTEADKEAALARITG-TTDLD- 78 (282)
T ss_pred cEEEEEccCHHHHHHHHHHHHCC---CceEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhCeEE-eCCHH-
Confidence 4677889983 55666777776 6999999999999877655443322210000 000 00012222 12322
Q ss_pred cCCCCCCccEEEEccccccCChhHHHHHHHHHHHccCCCEEEEE-ecCCchhHHHHhhccCccCCCCcchhhhccccccC
Q 002218 788 FDSRLHGFDIGTCLEVIEHMEEDEASQFGNIVLSSFRPRILIVS-TPNYEYNAILQKSSSTIQEDDPDEKTQLQSCKFRN 866 (952)
Q Consensus 788 Lpf~d~sFDVVVcieVIEHL~dD~l~~L~eeI~RvLKPG~LIIS-TPN~efN~lf~~L~~~ta~eYPde~~g~~~~~fRh 866 (952)
.....|+|+-. +-+.+. ....+.+.+.+.++|+.++++ |-......+...+ + .|..-. ...+-+
T Consensus 79 ---~~~~aDlVi~a-v~e~~~--~k~~~~~~l~~~~~~~~il~s~ts~~~~~~la~~~-~-----~~~r~i---g~h~~~ 143 (282)
T PRK05808 79 ---DLKDADLVIEA-ATENMD--LKKKIFAQLDEIAKPEAILATNTSSLSITELAAAT-K-----RPDKVI---GMHFFN 143 (282)
T ss_pred ---HhccCCeeeec-ccccHH--HHHHHHHHHHhhCCCCcEEEECCCCCCHHHHHHhh-C-----CCcceE---EeeccC
Confidence 13456776543 222222 223455568899999955544 3333333332222 1 000000 000111
Q ss_pred CCCc--------cccCHHHHHHHHHHHHHHcCcEEEEE
Q 002218 867 HDHK--------FEWTRDQFNCWATELAARHNYSVEFS 896 (952)
Q Consensus 867 ~DHk--------FEWTReEFqsWae~La~q~GYsVefs 896 (952)
+-|. -..|..+....+..++...|..+...
T Consensus 144 P~~~~~~vev~~g~~t~~e~~~~~~~l~~~lGk~pv~~ 181 (282)
T PRK05808 144 PVPVMKLVEIIRGLATSDATHEAVEALAKKIGKTPVEV 181 (282)
T ss_pred CcccCccEEEeCCCCCCHHHHHHHHHHHHHcCCeeEEe
Confidence 1110 12455666667778888888877655
No 358
>PRK10458 DNA cytosine methylase; Provisional
Probab=50.78 E-value=67 Score=38.64 Aligned_cols=60 Identities=10% Similarity=0.107 Sum_probs=43.6
Q ss_pred hhHHHHHHHHHHHhhcC------CCCEEEEEcCccchHHHHHhcCCCCCceEEEEeCChHHHHHHHHH
Q 002218 696 PLSKQRVEYALQHIKES------CATTLVDFGCGSGSLLDSLLDYPTALEKIVGVDISQKSLSRAAKI 757 (952)
Q Consensus 696 PL~~QR~efVldlL~~~------k~krVLDIGCGeG~ll~~LAr~g~~~~qVVGVDISeemLe~Arkr 757 (952)
++....+..+.+++... ..-+++|+=||-|.+...+...|. ..|.++|+++.+.+.-+.+
T Consensus 64 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~iDLFsGiGGl~lGfe~aG~--~~v~a~Eid~~A~~TY~~N 129 (467)
T PRK10458 64 RLSEAEFAHLQTLLPKPPAHHPHYAFRFIDLFAGIGGIRRGFEAIGG--QCVFTSEWNKHAVRTYKAN 129 (467)
T ss_pred CccHHHHHHHHHhcccCcccCcCCCceEEEeCcCccHHHHHHHHcCC--EEEEEEechHHHHHHHHHH
Confidence 45555555665555332 245899999999999999887762 5678999999887776554
No 359
>PRK07417 arogenate dehydrogenase; Reviewed
Probab=49.58 E-value=1.1e+02 Score=33.61 Aligned_cols=85 Identities=15% Similarity=0.135 Sum_probs=51.6
Q ss_pred EEEEEcCcc--chHHHHHhcCCCCCceEEEEeCChHHHHHHHHHHhhhhhcccccCCCCCCCccEEEEEcCccccCCCCC
Q 002218 716 TLVDFGCGS--GSLLDSLLDYPTALEKIVGVDISQKSLSRAAKIIHSKLSKKLDAAVPCTDVKSAVLFDGSITVFDSRLH 793 (952)
Q Consensus 716 rVLDIGCGe--G~ll~~LAr~g~~~~qVVGVDISeemLe~ArkrLsa~la~~~~~l~Pr~~~~nVtf~qGDa~dLpf~d~ 793 (952)
+|.=||+|. |.++..|.+.+ .+|+++|.+++.++.+.+. + .+.....+. . ...
T Consensus 2 ~I~IIG~G~mG~sla~~L~~~g---~~V~~~d~~~~~~~~a~~~----------------g--~~~~~~~~~---~-~~~ 56 (279)
T PRK07417 2 KIGIVGLGLIGGSLGLDLRSLG---HTVYGVSRRESTCERAIER----------------G--LVDEASTDL---S-LLK 56 (279)
T ss_pred eEEEEeecHHHHHHHHHHHHCC---CEEEEEECCHHHHHHHHHC----------------C--CcccccCCH---h-Hhc
Confidence 566789885 55777777776 6899999999888877542 0 011111111 1 124
Q ss_pred CccEEEEccccccCChhHHHHHHHHHHHccCCCEEEE
Q 002218 794 GFDIGTCLEVIEHMEEDEASQFGNIVLSSFRPRILIV 830 (952)
Q Consensus 794 sFDVVVcieVIEHL~dD~l~~L~eeI~RvLKPG~LII 830 (952)
..|+|+.. ++.+....+.+++...++|+.++.
T Consensus 57 ~aDlVila-----vp~~~~~~~~~~l~~~l~~~~ii~ 88 (279)
T PRK07417 57 DCDLVILA-----LPIGLLLPPSEQLIPALPPEAIVT 88 (279)
T ss_pred CCCEEEEc-----CCHHHHHHHHHHHHHhCCCCcEEE
Confidence 57887664 333444444556888888885444
No 360
>cd08254 hydroxyacyl_CoA_DH 6-hydroxycyclohex-1-ene-1-carboxyl-CoA dehydrogenase, N-benzyl-3-pyrrolidinol dehydrogenase, and other MDR family members. This group contains enzymes of the zinc-dependent alcohol dehydrogenase family, including members (aka MDR) identified as 6-hydroxycyclohex-1-ene-1-carboxyl-CoA dehydrogenase and N-benzyl-3-pyrrolidinol dehydrogenase. 6-hydroxycyclohex-1-ene-1-carboxyl-CoA dehydrogenase catalyzes the conversion of 6-Hydroxycyclohex-1-enecarbonyl-CoA and NAD+ to 6-Ketoxycyclohex-1-ene-1-carboxyl-CoA,NADH, and H+. This group displays the characteristic catalytic and structural zinc sites of the zinc-dependent alcohol dehydrogenases. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentatio
Probab=49.21 E-value=85 Score=33.95 Aligned_cols=44 Identities=20% Similarity=0.229 Sum_probs=33.9
Q ss_pred cCCCCEEEEEcCc-cchHHHHHhcCCCCCceEEEEeCChHHHHHHHH
Q 002218 711 ESCATTLVDFGCG-SGSLLDSLLDYPTALEKIVGVDISQKSLSRAAK 756 (952)
Q Consensus 711 ~~k~krVLDIGCG-eG~ll~~LAr~g~~~~qVVGVDISeemLe~Ark 756 (952)
...+.+||..|+| .|..+..+++..+ .+|++++.+++..+.+++
T Consensus 163 ~~~~~~vli~g~g~vG~~~~~la~~~G--~~V~~~~~s~~~~~~~~~ 207 (338)
T cd08254 163 VKPGETVLVIGLGGLGLNAVQIAKAMG--AAVIAVDIKEEKLELAKE 207 (338)
T ss_pred CCCCCEEEEECCcHHHHHHHHHHHHcC--CEEEEEcCCHHHHHHHHH
Confidence 4456788888987 4788877877543 679999999998887744
No 361
>TIGR00872 gnd_rel 6-phosphogluconate dehydrogenase (decarboxylating). This family resembles a larger family (gnd) of bacterial and eukaryotic 6-phosphogluconate dehydrogenases but differs from it by a deep split in a UPGMA similarity clustering tree and the lack of a central region of about 140 residues. Among complete genomes, it is found is found in Bacillus subtilis and Mycobacterium tuberculosis, both of which also contain gnd, and in Aquifex aeolicus. The protein from Methylobacillus flagellatus KT has been characterized as a decarboxylating 6-phosphogluconate dehydrogenase as part of an unusual formaldehyde oxidation cycle. In some sequenced organisms members of this family are the sole 6-phosphogluconate dehydrogenase present and are probably active in the pentose phosphate cycle.
Probab=48.47 E-value=69 Score=35.56 Aligned_cols=92 Identities=12% Similarity=0.108 Sum_probs=54.2
Q ss_pred EEEEEcCcc--chHHHHHhcCCCCCceEEEEeCChHHHHHHHHHHhhhhhcccccCCCCCCCccEEEEEcCccccCCCCC
Q 002218 716 TLVDFGCGS--GSLLDSLLDYPTALEKIVGVDISQKSLSRAAKIIHSKLSKKLDAAVPCTDVKSAVLFDGSITVFDSRLH 793 (952)
Q Consensus 716 rVLDIGCGe--G~ll~~LAr~g~~~~qVVGVDISeemLe~ArkrLsa~la~~~~~l~Pr~~~~nVtf~qGDa~dLpf~d~ 793 (952)
+|-=||+|. +.++..|++.+ .+|++.|.+++.++...+.- +.. ..+..++.....
T Consensus 2 ~Ig~IGlG~mG~~la~~L~~~g---~~V~~~dr~~~~~~~l~~~g-------------------~~~-~~s~~~~~~~~~ 58 (298)
T TIGR00872 2 QLGLIGLGRMGANIVRRLAKRG---HDCVGYDHDQDAVKAMKEDR-------------------TTG-VANLRELSQRLS 58 (298)
T ss_pred EEEEEcchHHHHHHHHHHHHCC---CEEEEEECCHHHHHHHHHcC-------------------Ccc-cCCHHHHHhhcC
Confidence 466688885 33556777776 78999999998776664310 000 012222221223
Q ss_pred CccEEEEccccccCChhHHHHHHHHHHHccCCCEEEEEecCC
Q 002218 794 GFDIGTCLEVIEHMEEDEASQFGNIVLSSFRPRILIVSTPNY 835 (952)
Q Consensus 794 sFDVVVcieVIEHL~dD~l~~L~eeI~RvLKPG~LIISTPN~ 835 (952)
..|+|+.. ++++....+.+.+...|++|.++|..-+.
T Consensus 59 ~~dvIi~~-----vp~~~~~~v~~~l~~~l~~g~ivid~st~ 95 (298)
T TIGR00872 59 APRVVWVM-----VPHGIVDAVLEELAPTLEKGDIVIDGGNS 95 (298)
T ss_pred CCCEEEEE-----cCchHHHHHHHHHHhhCCCCCEEEECCCC
Confidence 46887764 33334445556788889999666655544
No 362
>KOG1855 consensus Predicted RNA-binding protein [General function prediction only]
Probab=48.37 E-value=12 Score=44.00 Aligned_cols=94 Identities=28% Similarity=0.305 Sum_probs=65.6
Q ss_pred ChHHHHHHHHHHHhhhhcccccccCCCchhhhHHhhhhcCcccccccceEEEeecccccccccccCcccccchHHHHHHH
Q 002218 102 SAEEAWDKLIASVKHLFSNEFLSSQSPLRGHFIAALRRDGDLYGSVPASVIAVCDSKLANLCKLINPKVESSHLLVLTYI 181 (952)
Q Consensus 102 ~~~e~~~~l~~~~~~~f~~e~~~~~~pl~~h~~~~~~r~g~~~g~~p~~~~~~~d~k~~~~ck~~~~~~e~~p~~~~~~~ 181 (952)
-+||---+|+..|.|-||||=|..+.=|.-|. +|+ --|.||+++||.+- ||-- ++ .|--+ |
T Consensus 136 lsedl~~kIv~QVEyyFSDenL~~d~fLlkhv----rrn--keGyVpv~~vaSFK-KvK~---LT-----rd~~~----v 196 (484)
T KOG1855|consen 136 LSEDLAAKIVDQVEYYFSDENLLKDAFLLKHV----RRN--KEGYVPVKLVASFK-KVKA---LT-----RDWKL----V 196 (484)
T ss_pred ccHHHHHHHHHHhheeeccccccchHHHHHHH----hcC--CCCceeeehhhhHH-HHHH---Hh-----hhhHH----H
Confidence 35677779999999999999888876666665 454 46999999999873 2211 11 12222 2
Q ss_pred HHHhhccCCcEEeecCceeeeecCCCChhhhhhh
Q 002218 182 MRAATRLSEFVVTSEGQLSIWRKDPYPPEIKESS 215 (952)
Q Consensus 182 ~~a~~~~~~~~~~s~~~~~~~~~~p~~~~~~~~~ 215 (952)
--|.+ -+..+++|++.==.+|-.|+|.--.+-|
T Consensus 197 a~ALr-~S~kL~vseDgkKVrRisPlp~~~~eel 229 (484)
T KOG1855|consen 197 ADALR-KSSKLEVSEDGKKVRRISPLPEFDEEEL 229 (484)
T ss_pred HHHHh-hcceEEEccCCceeeecCCCCCcccccc
Confidence 22333 3555999999999999999986555544
No 363
>PF03686 UPF0146: Uncharacterised protein family (UPF0146); InterPro: IPR005353 The function of this family of proteins is unknown.; PDB: 2K4M_A.
Probab=47.17 E-value=23 Score=35.62 Aligned_cols=94 Identities=14% Similarity=0.122 Sum_probs=48.9
Q ss_pred cCCCCEEEEEcCccc-hHHHHHhcCCCCCceEEEEeCChHHHHHHHHHHhhhhhcccccCCCCCCCccEEEEEcCccccC
Q 002218 711 ESCATTLVDFGCGSG-SLLDSLLDYPTALEKIVGVDISQKSLSRAAKIIHSKLSKKLDAAVPCTDVKSAVLFDGSITVFD 789 (952)
Q Consensus 711 ~~k~krVLDIGCGeG-~ll~~LAr~g~~~~qVVGVDISeemLe~ArkrLsa~la~~~~~l~Pr~~~~nVtf~qGDa~dLp 789 (952)
.....+|+++|-|.= ..+..|+++| ..|+++|+.+. .|. ..+.++.-|+.+..
T Consensus 11 ~~~~~kiVEVGiG~~~~vA~~L~~~G---~dV~~tDi~~~---~a~--------------------~g~~~v~DDif~P~ 64 (127)
T PF03686_consen 11 LNNYGKIVEVGIGFNPEVAKKLKERG---FDVIATDINPR---KAP--------------------EGVNFVVDDIFNPN 64 (127)
T ss_dssp HS-SSEEEEET-TT--HHHHHHHHHS----EEEEE-SS-S---------------------------STTEE---SSS--
T ss_pred hCCCCcEEEECcCCCHHHHHHHHHcC---CcEEEEECccc---ccc--------------------cCcceeeecccCCC
Confidence 345569999999854 4556777777 89999999887 221 24667788887755
Q ss_pred CC-CCCccEEEEccccccCChhHHHHHHHHHHHccCCCEEEEEecCCc
Q 002218 790 SR-LHGFDIGTCLEVIEHMEEDEASQFGNIVLSSFRPRILIVSTPNYE 836 (952)
Q Consensus 790 f~-d~sFDVVVcieVIEHL~dD~l~~L~eeI~RvLKPG~LIISTPN~e 836 (952)
.. -.+.|+|.++--=. +-...+. .+++.+.- -++|.+-..+
T Consensus 65 l~iY~~a~lIYSiRPP~----El~~~il-~lA~~v~a-dlii~pL~~e 106 (127)
T PF03686_consen 65 LEIYEGADLIYSIRPPP----ELQPPIL-ELAKKVGA-DLIIRPLGGE 106 (127)
T ss_dssp HHHHTTEEEEEEES--T----TSHHHHH-HHHHHHT--EEEEE-BTTB
T ss_pred HHHhcCCcEEEEeCCCh----HHhHHHH-HHHHHhCC-CEEEECCCCC
Confidence 43 35789998865422 2223333 25544422 5566555544
No 364
>PF06690 DUF1188: Protein of unknown function (DUF1188); InterPro: IPR009573 This family consists of several hypothetical archaeal proteins of around 260 residues in length, which seem to be specific to Methanobacterium, Methanococcus and Methanopyrus species. The function of this family is unknown.
Probab=45.86 E-value=1.9e+02 Score=32.24 Aligned_cols=107 Identities=16% Similarity=0.189 Sum_probs=71.8
Q ss_pred hHHHHHHHHHHHhhcCCCCEEEEEcCc-cchHHHHHhcCCCCCceEEEEeCChHHHHHHHHHHhhhhhcccccCCCCCCC
Q 002218 697 LSKQRVEYALQHIKESCATTLVDFGCG-SGSLLDSLLDYPTALEKIVGVDISQKSLSRAAKIIHSKLSKKLDAAVPCTDV 775 (952)
Q Consensus 697 L~~QR~efVldlL~~~k~krVLDIGCG-eG~ll~~LAr~g~~~~qVVGVDISeemLe~ArkrLsa~la~~~~~l~Pr~~~ 775 (952)
..+...+.+...+....-+++|=+|.= +|.+........ ++|+-+||.+.+.+.-.
T Consensus 25 I~ekKa~ai~~~le~~~~k~~lI~G~YltG~~iA~~L~~~---~eV~lvDI~p~lk~ll~-------------------- 81 (252)
T PF06690_consen 25 IAEKKANAIKYWLEGEEFKQALIFGAYLTGNFIASALSKK---CEVTLVDIHPHLKELLN-------------------- 81 (252)
T ss_pred HHHHHHHHHHHHhcccccceEEEEEEEeehHHHHHHhccC---ceEEEEeCcHHHHHHhc--------------------
Confidence 344556667777776666799999842 555554444433 59999999998766542
Q ss_pred ccEEEEEcCccccCCCCCCccEEEEccccccCChhHHHHHHHHHHHccCCCEEEEEecCCchh
Q 002218 776 KSAVLFDGSITVFDSRLHGFDIGTCLEVIEHMEEDEASQFGNIVLSSFRPRILIVSTPNYEYN 838 (952)
Q Consensus 776 ~nVtf~qGDa~dLpf~d~sFDVVVcieVIEHL~dD~l~~L~eeI~RvLKPG~LIISTPN~efN 838 (952)
.+|.|..+ ........|+|+-.--|--+.++ ..+-+.|+++|+..|..+++
T Consensus 82 ~~i~F~~~----~~~~~~~~DlIID~TGlGGv~~~--------~Ls~~~p~v~IVEdP~~~~s 132 (252)
T PF06690_consen 82 ENIKFMEF----RNGLEGNPDLIIDTTGLGGVDPD--------FLSKFNPKVFIVEDPKGDGS 132 (252)
T ss_pred CCCceeec----cCCCCCCCCEEEECCCCCCCCHH--------HHhccCCCEEEEECCCccCc
Confidence 25666622 11123479999998877777633 34456799999999998884
No 365
>PRK09496 trkA potassium transporter peripheral membrane component; Reviewed
Probab=45.57 E-value=3.2e+02 Score=31.65 Aligned_cols=105 Identities=13% Similarity=0.140 Sum_probs=62.2
Q ss_pred CCCEEEEEcCccc-h-HHHHHhcCCCCCceEEEEeCChHHHHHHHHHHhhhhhcccccCCCCCCCccEEEEEcCccccC-
Q 002218 713 CATTLVDFGCGSG-S-LLDSLLDYPTALEKIVGVDISQKSLSRAAKIIHSKLSKKLDAAVPCTDVKSAVLFDGSITVFD- 789 (952)
Q Consensus 713 k~krVLDIGCGeG-~-ll~~LAr~g~~~~qVVGVDISeemLe~ArkrLsa~la~~~~~l~Pr~~~~nVtf~qGDa~dLp- 789 (952)
..++|+=+|+|.= . ++..|.+.+ ..|+.+|.+++.++..++.. ..+.++.||..+..
T Consensus 230 ~~~~iiIiG~G~~g~~l~~~L~~~~---~~v~vid~~~~~~~~~~~~~-----------------~~~~~i~gd~~~~~~ 289 (453)
T PRK09496 230 PVKRVMIVGGGNIGYYLAKLLEKEG---YSVKLIERDPERAEELAEEL-----------------PNTLVLHGDGTDQEL 289 (453)
T ss_pred CCCEEEEECCCHHHHHHHHHHHhCC---CeEEEEECCHHHHHHHHHHC-----------------CCCeEEECCCCCHHH
Confidence 4578999888632 2 223444545 78999999999888775431 24678888887542
Q ss_pred ---CCCCCccEEEEccccccCChhHHHHHHHHHHHccCCCEEEEEecCCchhHHHH
Q 002218 790 ---SRLHGFDIGTCLEVIEHMEEDEASQFGNIVLSSFRPRILIVSTPNYEYNAILQ 842 (952)
Q Consensus 790 ---f~d~sFDVVVcieVIEHL~dD~l~~L~eeI~RvLKPG~LIISTPN~efN~lf~ 842 (952)
.....+|+|++..- ++....+...+.+.+.+..+++.+-+.++...+.
T Consensus 290 L~~~~~~~a~~vi~~~~-----~~~~n~~~~~~~~~~~~~~ii~~~~~~~~~~~~~ 340 (453)
T PRK09496 290 LEEEGIDEADAFIALTN-----DDEANILSSLLAKRLGAKKVIALVNRPAYVDLVE 340 (453)
T ss_pred HHhcCCccCCEEEECCC-----CcHHHHHHHHHHHHhCCCeEEEEECCcchHHHHH
Confidence 13356888776322 1233333333455566665555555555544444
No 366
>PF03492 Methyltransf_7: SAM dependent carboxyl methyltransferase; InterPro: IPR005299 This family of plant methyltransferases contains enzymes that act on a variety of substrates including salicylic acid, jasmonic acid and 7-Methylxanthine. Caffeine is synthesized through sequential three-step methylation of xanthine derivatives at positions 7-N, 3-N, and 1-N. The protein 7-methylxanthine methyltransferase (designated as CaMXMT) catalyses the second step to produce theobromine [].; GO: 0008168 methyltransferase activity; PDB: 2EFJ_A 1M6E_X 2EG5_C 3B5I_B.
Probab=43.54 E-value=94 Score=35.58 Aligned_cols=90 Identities=12% Similarity=-0.012 Sum_probs=44.1
Q ss_pred CCCEEEEEcCccchHHHHHhc---------------CCCCCceEEEEeCChH-HHHHHHHHHhhhhhcccccCCCCCCCc
Q 002218 713 CATTLVDFGCGSGSLLDSLLD---------------YPTALEKIVGVDISQK-SLSRAAKIIHSKLSKKLDAAVPCTDVK 776 (952)
Q Consensus 713 k~krVLDIGCGeG~ll~~LAr---------------~g~~~~qVVGVDISee-mLe~ArkrLsa~la~~~~~l~Pr~~~~ 776 (952)
+.-+|+|+||..|..+..+.. ...+..+|+--|.-.. .-...+ .+....... . ....-
T Consensus 16 ~~~~iaD~GcS~G~Nsl~~~~~ii~~i~~~~~~~~~~~~~e~~v~~nDlP~NDFn~lF~-~l~~~~~~~----~-~~~~~ 89 (334)
T PF03492_consen 16 KPFRIADLGCSSGPNSLLAVSNIIDAIRERCRSSNNQPPPEFQVFFNDLPSNDFNTLFK-SLPSFQQSL----K-KFRNY 89 (334)
T ss_dssp TEEEEEEES--SSHHHHHHHHHHHHHHHHHHHCTT-SS--EEEEEEEE-TTS-HHHHHH-CHHHHHHHH----H-HTTSE
T ss_pred CceEEEecCCCCCccHHHHHHHHHHHHHHHhhhhcCCCCCeEEEEeCCCCCccHHHHHH-hChhhhhcc----C-CCceE
Confidence 446899999999999864431 1123357888886442 222221 121110000 0 00111
Q ss_pred cEEEEEcCccccCCCCCCccEEEEccccccCC
Q 002218 777 SAVLFDGSITVFDSRLHGFDIGTCLEVIEHME 808 (952)
Q Consensus 777 nVtf~qGDa~dLpf~d~sFDVVVcieVIEHL~ 808 (952)
=+.-+-|+...--++.++.|++++...+||+.
T Consensus 90 f~~gvpgSFy~rLfP~~Svh~~~Ss~alHWLS 121 (334)
T PF03492_consen 90 FVSGVPGSFYGRLFPSNSVHFGHSSYALHWLS 121 (334)
T ss_dssp EEEEEES-TTS--S-TT-EEEEEEES-TTB-S
T ss_pred EEEecCchhhhccCCCCceEEEEEechhhhcc
Confidence 23445677777777899999999999999986
No 367
>KOG0822 consensus Protein kinase inhibitor [Cell cycle control, cell division, chromosome partitioning]
Probab=43.39 E-value=60 Score=39.78 Aligned_cols=104 Identities=13% Similarity=0.211 Sum_probs=69.9
Q ss_pred CCEEEEEcCccchHHHHHhc---CCCCCceEEEEeCChHHHHHHHHHHhhhhhcccccCCCCCCCccEEEEEcCccccCC
Q 002218 714 ATTLVDFGCGSGSLLDSLLD---YPTALEKIVGVDISQKSLSRAAKIIHSKLSKKLDAAVPCTDVKSAVLFDGSITVFDS 790 (952)
Q Consensus 714 ~krVLDIGCGeG~ll~~LAr---~g~~~~qVVGVDISeemLe~ArkrLsa~la~~~~~l~Pr~~~~nVtf~qGDa~dLpf 790 (952)
...|+-+|.|.|-+.....+ ......++++|+-++.++-.-..+ . . +....+|+++.+|+..+..
T Consensus 368 ~tVimvlGaGRGPLv~~~lkaa~~~~RkVklyavEKNPNAivtL~~~-n--~---------~~W~~~Vtii~~DMR~w~a 435 (649)
T KOG0822|consen 368 TTVIMVLGAGRGPLVDASLKAAEETDRKVKLYAVEKNPNAIVTLQNR-N--F---------ECWDNRVTIISSDMRKWNA 435 (649)
T ss_pred eEEEEEecCCCccHHHHHHHHHHHhcCceEEEEEecCcchhhhhhhh-c--h---------hhhcCeeEEEeccccccCC
Confidence 34688999999998864432 111236899999999887665432 1 0 1234589999999999986
Q ss_pred CCCCccEEEEccccccCChhHH-HHHHHHHHHccCCCEEEE
Q 002218 791 RLHGFDIGTCLEVIEHMEEDEA-SQFGNIVLSSFRPRILIV 830 (952)
Q Consensus 791 ~d~sFDVVVcieVIEHL~dD~l-~~L~eeI~RvLKPG~LII 830 (952)
+....|++|+ +.|--+.+.++ ..-.+-+.++|||..+.|
T Consensus 436 p~eq~DI~VS-ELLGSFGDNELSPECLDG~q~fLkpdgIsI 475 (649)
T KOG0822|consen 436 PREQADIIVS-ELLGSFGDNELSPECLDGAQKFLKPDGISI 475 (649)
T ss_pred chhhccchHH-HhhccccCccCCHHHHHHHHhhcCCCceEc
Confidence 6688998875 45555544332 122245789999985554
No 368
>PRK03659 glutathione-regulated potassium-efflux system protein KefB; Provisional
Probab=42.95 E-value=93 Score=38.25 Aligned_cols=101 Identities=12% Similarity=0.086 Sum_probs=60.8
Q ss_pred CEEEEEcCcc-chHH-HHHhcCCCCCceEEEEeCChHHHHHHHHHHhhhhhcccccCCCCCCCccEEEEEcCccccCC--
Q 002218 715 TTLVDFGCGS-GSLL-DSLLDYPTALEKIVGVDISQKSLSRAAKIIHSKLSKKLDAAVPCTDVKSAVLFDGSITVFDS-- 790 (952)
Q Consensus 715 krVLDIGCGe-G~ll-~~LAr~g~~~~qVVGVDISeemLe~ArkrLsa~la~~~~~l~Pr~~~~nVtf~qGDa~dLpf-- 790 (952)
.+|+=+|+|. |... +.|.+++ .+++.+|.+++.++.+++. ....+.||+.+.+.
T Consensus 401 ~~vII~G~Gr~G~~va~~L~~~g---~~vvvID~d~~~v~~~~~~-------------------g~~v~~GDat~~~~L~ 458 (601)
T PRK03659 401 PQVIIVGFGRFGQVIGRLLMANK---MRITVLERDISAVNLMRKY-------------------GYKVYYGDATQLELLR 458 (601)
T ss_pred CCEEEecCchHHHHHHHHHHhCC---CCEEEEECCHHHHHHHHhC-------------------CCeEEEeeCCCHHHHH
Confidence 4676666663 3322 3344455 7899999999998888541 35678899987542
Q ss_pred --CCCCccEEEEccccccCChhHHHHHHHHHHHccCCC-EEEEEecCCchhHHHH
Q 002218 791 --RLHGFDIGTCLEVIEHMEEDEASQFGNIVLSSFRPR-ILIVSTPNYEYNAILQ 842 (952)
Q Consensus 791 --~d~sFDVVVcieVIEHL~dD~l~~L~eeI~RvLKPG-~LIISTPN~efN~lf~ 842 (952)
.-.+.|++++.- ++++.....-...|.+.|. .++.-+-+.+....+.
T Consensus 459 ~agi~~A~~vv~~~-----~d~~~n~~i~~~~r~~~p~~~IiaRa~~~~~~~~L~ 508 (601)
T PRK03659 459 AAGAEKAEAIVITC-----NEPEDTMKIVELCQQHFPHLHILARARGRVEAHELL 508 (601)
T ss_pred hcCCccCCEEEEEe-----CCHHHHHHHHHHHHHHCCCCeEEEEeCCHHHHHHHH
Confidence 235677776632 2233332222356667888 6666666554444444
No 369
>cd08230 glucose_DH Glucose dehydrogenase. Glucose dehydrogenase (GlcDH), a member of the medium chain dehydrogenase/zinc-dependent alcohol dehydrogenase-like family, catalyzes the NADP(+)-dependent oxidation of glucose to gluconate, the first step in the Entner-Doudoroff pathway, an alternative to or substitute for glycolysis or the pentose phosphate pathway. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossman fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contai
Probab=42.47 E-value=1.5e+02 Score=33.15 Aligned_cols=43 Identities=14% Similarity=0.125 Sum_probs=31.5
Q ss_pred CCCCEEEEEcCcc-chHHHHHhcCCCCCceEEEEeC---ChHHHHHHHH
Q 002218 712 SCATTLVDFGCGS-GSLLDSLLDYPTALEKIVGVDI---SQKSLSRAAK 756 (952)
Q Consensus 712 ~k~krVLDIGCGe-G~ll~~LAr~g~~~~qVVGVDI---SeemLe~Ark 756 (952)
.++.+||=+|+|. |.++..+++..+ .+|+++|. +++-++.+++
T Consensus 171 ~~g~~vlI~G~G~vG~~a~q~ak~~G--~~vi~~~~~~~~~~~~~~~~~ 217 (355)
T cd08230 171 WNPRRALVLGAGPIGLLAALLLRLRG--FEVYVLNRRDPPDPKADIVEE 217 (355)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHcC--CeEEEEecCCCCHHHHHHHHH
Confidence 4678999999974 667777777653 58999986 5666766653
No 370
>PRK03562 glutathione-regulated potassium-efflux system protein KefC; Provisional
Probab=42.12 E-value=1.2e+02 Score=37.66 Aligned_cols=97 Identities=15% Similarity=0.172 Sum_probs=62.4
Q ss_pred CCEEEEEcCcc-chHH-HHHhcCCCCCceEEEEeCChHHHHHHHHHHhhhhhcccccCCCCCCCccEEEEEcCccccCC-
Q 002218 714 ATTLVDFGCGS-GSLL-DSLLDYPTALEKIVGVDISQKSLSRAAKIIHSKLSKKLDAAVPCTDVKSAVLFDGSITVFDS- 790 (952)
Q Consensus 714 ~krVLDIGCGe-G~ll-~~LAr~g~~~~qVVGVDISeemLe~ArkrLsa~la~~~~~l~Pr~~~~nVtf~qGDa~dLpf- 790 (952)
..+|+=+|||. |... +.|.+.+ ..++.+|.+++.++.+++. ....+.||+.+.+.
T Consensus 400 ~~~vII~G~Gr~G~~va~~L~~~g---~~vvvID~d~~~v~~~~~~-------------------g~~v~~GDat~~~~L 457 (621)
T PRK03562 400 QPRVIIAGFGRFGQIVGRLLLSSG---VKMTVLDHDPDHIETLRKF-------------------GMKVFYGDATRMDLL 457 (621)
T ss_pred cCcEEEEecChHHHHHHHHHHhCC---CCEEEEECCHHHHHHHHhc-------------------CCeEEEEeCCCHHHH
Confidence 36788888884 5533 4455555 7899999999999888541 35678899988653
Q ss_pred ---CCCCccEEEEccccccCChhHHHHHHHHHHHccCCC-EEEEEecCCch
Q 002218 791 ---RLHGFDIGTCLEVIEHMEEDEASQFGNIVLSSFRPR-ILIVSTPNYEY 837 (952)
Q Consensus 791 ---~d~sFDVVVcieVIEHL~dD~l~~L~eeI~RvLKPG-~LIISTPN~ef 837 (952)
.....|++++.- ++++.....-...+.+.|. .++.-+-+.+.
T Consensus 458 ~~agi~~A~~vvv~~-----~d~~~n~~i~~~ar~~~p~~~iiaRa~d~~~ 503 (621)
T PRK03562 458 ESAGAAKAEVLINAI-----DDPQTSLQLVELVKEHFPHLQIIARARDVDH 503 (621)
T ss_pred HhcCCCcCCEEEEEe-----CCHHHHHHHHHHHHHhCCCCeEEEEECCHHH
Confidence 234678777642 2333333333466677888 66655555433
No 371
>COG1568 Predicted methyltransferases [General function prediction only]
Probab=41.38 E-value=16 Score=41.31 Aligned_cols=99 Identities=15% Similarity=0.162 Sum_probs=67.6
Q ss_pred hhhhhhhcCCchhHHHHHHHHHHHhhcCCCCEEEEEcCccchHHH--HHhcCCCCCceEEEEeCChHHHHHHHHHHhhhh
Q 002218 685 EDRMEQALFSPPLSKQRVEYALQHIKESCATTLVDFGCGSGSLLD--SLLDYPTALEKIVGVDISQKSLSRAAKIIHSKL 762 (952)
Q Consensus 685 EeRye~~~F~PPL~~QR~efVldlL~~~k~krVLDIGCGeG~ll~--~LAr~g~~~~qVVGVDISeemLe~ArkrLsa~l 762 (952)
...|.+.+-.|...-.|+.++.+. ....++.|+-+| -.-..+. +|.... .+|.-|||++..+..-.+...+
T Consensus 125 ~~~yDQgfvTpEttv~Rv~lm~~R-GDL~gK~I~vvG-DDDLtsia~aLt~mp---k~iaVvDIDERli~fi~k~aee-- 197 (354)
T COG1568 125 LHQYDQGFVTPETTVSRVALMYSR-GDLEGKEIFVVG-DDDLTSIALALTGMP---KRIAVVDIDERLIKFIEKVAEE-- 197 (354)
T ss_pred chhcccccccccceeeeeeeeccc-cCcCCCeEEEEc-CchhhHHHHHhcCCC---ceEEEEechHHHHHHHHHHHHH--
Confidence 355677777777777788777654 445788999999 3333333 333444 7999999999999887654432
Q ss_pred hcccccCCCCCCCccEEEEEcCccccCCC--CCCccEEEE
Q 002218 763 SKKLDAAVPCTDVKSAVLFDGSITVFDSR--LHGFDIGTC 800 (952)
Q Consensus 763 a~~~~~l~Pr~~~~nVtf~qGDa~dLpf~--d~sFDVVVc 800 (952)
.+..+++.+.-|+.+.-++ ...||+.+.
T Consensus 198 ----------~g~~~ie~~~~Dlr~plpe~~~~kFDvfiT 227 (354)
T COG1568 198 ----------LGYNNIEAFVFDLRNPLPEDLKRKFDVFIT 227 (354)
T ss_pred ----------hCccchhheeehhcccChHHHHhhCCeeec
Confidence 2455788888888764333 468998865
No 372
>PRK08293 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=39.67 E-value=3.4e+02 Score=29.86 Aligned_cols=42 Identities=19% Similarity=0.092 Sum_probs=31.5
Q ss_pred CEEEEEcCccc--hHHHHHhcCCCCCceEEEEeCChHHHHHHHHHHh
Q 002218 715 TTLVDFGCGSG--SLLDSLLDYPTALEKIVGVDISQKSLSRAAKIIH 759 (952)
Q Consensus 715 krVLDIGCGeG--~ll~~LAr~g~~~~qVVGVDISeemLe~ArkrLs 759 (952)
++|.=||+|.- .++..+++.+ .+|+.+|++++.++.+++++.
T Consensus 4 ~kIaViGaG~mG~~iA~~la~~G---~~V~l~d~~~~~l~~~~~~~~ 47 (287)
T PRK08293 4 KNVTVAGAGVLGSQIAFQTAFHG---FDVTIYDISDEALEKAKERIA 47 (287)
T ss_pred cEEEEECCCHHHHHHHHHHHhcC---CeEEEEeCCHHHHHHHHHHHH
Confidence 57888899843 3445566666 789999999999988876643
No 373
>PRK10902 FKBP-type peptidyl-prolyl cis-trans isomerase; Provisional
Probab=38.93 E-value=85 Score=35.14 Aligned_cols=99 Identities=19% Similarity=0.358 Sum_probs=65.1
Q ss_pred CCCCccCCCCceeEEEEEEEEeecccchhhhhccccceEEEeccCccchhhhhhhhhccccccceecccCCchhhhhhhc
Q 002218 575 PDSGIYPSNGCLSFISYSVSLVIEGETMKELLESREEFEFEMGTGAVIPQVEVVTAQMSVGQSACFCKELPPQELILAAA 654 (952)
Q Consensus 575 ~~~~~~p~~gs~~~i~y~~~l~~~~~~~~~~~e~~~~~~fe~g~~a~~~~l~~v~~q~sv~q~~~~~~~l~~~~l~lAa~ 654 (952)
...|-.|..|..+.|.|...+. +|+--..--+....++|.+ +.+++-++..+..|.+|....+. +||..-+=...
T Consensus 155 ~G~G~~p~~gD~V~V~Y~g~l~-dG~vfdss~~~g~p~~f~l--~~vipG~~EaL~~Mk~Gek~~l~--IP~~laYG~~g 229 (269)
T PRK10902 155 EGTGEAPKDSDTVVVNYKGTLI-DGKEFDNSYTRGEPLSFRL--DGVIPGWTEGLKNIKKGGKIKLV--IPPELAYGKAG 229 (269)
T ss_pred CCCCCCCCCCCEEEEEEEEEeC-CCCEeeccccCCCceEEec--CCcchHHHHHHhcCCCCcEEEEE--ECchhhCCCCC
Confidence 3446789999999999999983 5543211111134556655 56999999999999999997776 55543332221
Q ss_pred cCcccchhcccccccccceeeeecccCCChh
Q 002218 655 DDSARTFSLLSSRACCLEYHITLLRVTEPPE 685 (952)
Q Consensus 655 ~~~~~DiSlLs~d~~~LEyyI~LL~v~ep~E 685 (952)
. ..++-.+. +.|-|.++.+..+.+
T Consensus 230 ---~---~gIppns~-LvfeVeLl~V~~~~~ 253 (269)
T PRK10902 230 ---V---PGIPANST-LVFDVELLDVKPAPK 253 (269)
T ss_pred ---C---CCCCCCCc-EEEEEEEEEeccCcc
Confidence 1 12445555 888899988765443
No 374
>KOG2198 consensus tRNA cytosine-5-methylases and related enzymes of the NOL1/NOP2/sun superfamily [Translation, ribosomal structure and biogenesis]
Probab=38.32 E-value=2.1e+02 Score=33.68 Aligned_cols=112 Identities=14% Similarity=0.130 Sum_probs=68.8
Q ss_pred hcCCCCEEEEEcCccchHHHHHhcCCC---CCceEEEEeCChHHHHHHHHHHhhhhhcccccCCCCCCCccEEEEEcCcc
Q 002218 710 KESCATTLVDFGCGSGSLLDSLLDYPT---ALEKIVGVDISQKSLSRAAKIIHSKLSKKLDAAVPCTDVKSAVLFDGSIT 786 (952)
Q Consensus 710 ~~~k~krVLDIGCGeG~ll~~LAr~g~---~~~qVVGVDISeemLe~ArkrLsa~la~~~~~l~Pr~~~~nVtf~qGDa~ 786 (952)
...++.+|||.....|.=+..|.+..- ....|++=|++..-+..-.+.+. ++ ..+++.+...++.
T Consensus 152 ~v~p~~~VLDmCAAPG~Kt~qLLeal~~~~~~g~vvaND~d~~R~~~L~~q~~-~l-----------~~~~~~v~~~~~~ 219 (375)
T KOG2198|consen 152 GVKPGDKVLDMCAAPGGKTAQLLEALHKDPTRGYVVANDVDPKRLNMLVHQLK-RL-----------PSPNLLVTNHDAS 219 (375)
T ss_pred ccCCCCeeeeeccCCCccHHHHHHHHhcCCCCCeeEecccCHHHHHHHHHHHh-cc-----------CCcceeeecccce
Confidence 446789999999999998877766430 01389999999977666655442 11 1223444444443
Q ss_pred ccCC---------CCCCccEEEE------ccccccCC----------------hhHHHHHHHHHHHccCCC-EEEEEecC
Q 002218 787 VFDS---------RLHGFDIGTC------LEVIEHME----------------EDEASQFGNIVLSSFRPR-ILIVSTPN 834 (952)
Q Consensus 787 dLpf---------~d~sFDVVVc------ieVIEHL~----------------dD~l~~L~eeI~RvLKPG-~LIISTPN 834 (952)
.+|- .-..||-|+| -.++.+.+ .=+...+ ..-.++||+| .++-+|-.
T Consensus 220 ~~p~~~~~~~~~~~~~~fDrVLvDVPCS~Dgt~rk~~~i~~~~w~~~~~~~L~~LQ~~iL-~rgl~lLk~GG~lVYSTCS 298 (375)
T KOG2198|consen 220 LFPNIYLKDGNDKEQLKFDRVLVDVPCSGDGTLRKNPNIWKEGWKTQRALGLHALQLRIL-RRGLRLLKVGGRLVYSTCS 298 (375)
T ss_pred eccccccccCchhhhhhcceeEEecccCCCcccccCchHhhhhhhhhhccCChHHHHHHH-HHHHHHhcCCCEEEEeccC
Confidence 3332 2246999887 12333333 1122333 4578999999 88888864
No 375
>PRK11570 peptidyl-prolyl cis-trans isomerase; Provisional
Probab=37.42 E-value=54 Score=35.14 Aligned_cols=64 Identities=25% Similarity=0.369 Sum_probs=51.0
Q ss_pred CccCCCCceeEEEEEEEEeecccchhhhhcc----ccceEEEeccCccchhhhhhhhhccccccceecccCCchhhh
Q 002218 578 GIYPSNGCLSFISYSVSLVIEGETMKELLES----REEFEFEMGTGAVIPQVEVVTAQMSVGQSACFCKELPPQELI 650 (952)
Q Consensus 578 ~~~p~~gs~~~i~y~~~l~~~~~~~~~~~e~----~~~~~fe~g~~a~~~~l~~v~~q~sv~q~~~~~~~l~~~~l~ 650 (952)
|-.|..|+.+-|.|...|. +|+ +++| ..-++|.+| .+++-++..+..|.+|-.+.|. +||..-+
T Consensus 114 G~~p~~~d~V~v~Y~g~l~-dG~----vfdss~~~g~P~~f~l~--~vipG~~eaL~~M~~G~k~~~~--IP~~lAY 181 (206)
T PRK11570 114 GAIPARTDRVRVHYTGKLI-DGT----VFDSSVARGEPAEFPVN--GVIPGWIEALTLMPVGSKWELT--IPHELAY 181 (206)
T ss_pred CCCCCCCCEEEEEEEEEEC-CCC----EEEeccCCCCCeEEEee--chhhHHHHHHcCCCCCCEEEEE--ECHHHcC
Confidence 6789999999999999995 554 3444 345788885 6899999999999999998887 7666443
No 376
>PRK11154 fadJ multifunctional fatty acid oxidation complex subunit alpha; Reviewed
Probab=36.95 E-value=2.4e+02 Score=35.58 Aligned_cols=162 Identities=15% Similarity=0.109 Sum_probs=84.7
Q ss_pred CCEEEEEcCcc--chHHHHHh-cCCCCCceEEEEeCChHHHHHHHHHHhhhhhcccccC--CC---CCCCccEEEEEcCc
Q 002218 714 ATTLVDFGCGS--GSLLDSLL-DYPTALEKIVGVDISQKSLSRAAKIIHSKLSKKLDAA--VP---CTDVKSAVLFDGSI 785 (952)
Q Consensus 714 ~krVLDIGCGe--G~ll~~LA-r~g~~~~qVVGVDISeemLe~ArkrLsa~la~~~~~l--~P---r~~~~nVtf~qGDa 785 (952)
-++|.=||+|. ...+..++ ..| ..|+-+|++++.++.+.+++...++...... .+ .....++++.. |.
T Consensus 309 i~~v~ViGaG~mG~giA~~~a~~~G---~~V~l~d~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~~~-~~ 384 (708)
T PRK11154 309 VNKVGVLGGGLMGGGIAYVTATKAG---LPVRIKDINPQGINHALKYSWDLLDKKVKRRHLKPSERDKQMALISGTT-DY 384 (708)
T ss_pred ccEEEEECCchhhHHHHHHHHHHcC---CeEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhcEEEeC-Ch
Confidence 36899999997 33444455 556 8999999999999998877655433221100 00 00112344431 22
Q ss_pred cccCCCCCCccEEEEccccccCChhHHHHHHHHHHHccCCCEEEEE-ecCCchhHHHHhhccCccCCCCcchhhhccccc
Q 002218 786 TVFDSRLHGFDIGTCLEVIEHMEEDEASQFGNIVLSSFRPRILIVS-TPNYEYNAILQKSSSTIQEDDPDEKTQLQSCKF 864 (952)
Q Consensus 786 ~dLpf~d~sFDVVVcieVIEHL~dD~l~~L~eeI~RvLKPG~LIIS-TPN~efN~lf~~L~~~ta~eYPde~~g~~~~~f 864 (952)
. ...+.|+|+=. +.|.+. ..+.+..++-++++|+.++.+ |-...-..+...+ ..|..-. ...|
T Consensus 385 ~----~~~~aDlViEa-v~E~~~--~K~~v~~~le~~~~~~~ilasnTS~l~i~~la~~~------~~p~r~i---g~Hf 448 (708)
T PRK11154 385 R----GFKHADVVIEA-VFEDLA--LKQQMVAEVEQNCAPHTIFASNTSSLPIGQIAAAA------ARPEQVI---GLHY 448 (708)
T ss_pred H----HhccCCEEeec-ccccHH--HHHHHHHHHHhhCCCCcEEEECCCCCCHHHHHHhc------CcccceE---EEec
Confidence 1 23456766543 444443 233445579999999944443 3322223333222 1111001 1112
Q ss_pred cCCCCc--------cccCHHHHHHHHHHHHHHcCcEEEE
Q 002218 865 RNHDHK--------FEWTRDQFNCWATELAARHNYSVEF 895 (952)
Q Consensus 865 Rh~DHk--------FEWTReEFqsWae~La~q~GYsVef 895 (952)
-++-|. ..-|..+....+..++.+.|.....
T Consensus 449 f~P~~~~~lVEvv~g~~Ts~~~~~~~~~~~~~~gk~pv~ 487 (708)
T PRK11154 449 FSPVEKMPLVEVIPHAKTSAETIATTVALAKKQGKTPIV 487 (708)
T ss_pred CCccccCceEEEECCCCCCHHHHHHHHHHHHHcCCceEE
Confidence 222221 2356667777777788777775544
No 377
>COG3129 Predicted SAM-dependent methyltransferase [General function prediction only]
Probab=36.35 E-value=73 Score=35.59 Aligned_cols=99 Identities=19% Similarity=0.249 Sum_probs=57.8
Q ss_pred hhHHHHHHH---HHHHhhc------CCCCEEEEEcCccchHH--HHHhcCCCCCceEEEEeCChHHHHHHHHHHhhhhhc
Q 002218 696 PLSKQRVEY---ALQHIKE------SCATTLVDFGCGSGSLL--DSLLDYPTALEKIVGVDISQKSLSRAAKIIHSKLSK 764 (952)
Q Consensus 696 PL~~QR~ef---VldlL~~------~k~krVLDIGCGeG~ll--~~LAr~g~~~~qVVGVDISeemLe~ArkrLsa~la~ 764 (952)
|--+.|.+| +.++|.. .+..++||||-|.-..- .-..+++ .+.+|-||++..++.|+..+....
T Consensus 52 PpvPgRAdYih~laDLL~s~~g~~~~~~i~~LDIGvGAnCIYPliG~~eYg---wrfvGseid~~sl~sA~~ii~~N~-- 126 (292)
T COG3129 52 PPVPGRADYIHHLADLLASTSGQIPGKNIRILDIGVGANCIYPLIGVHEYG---WRFVGSEIDSQSLSSAKAIISANP-- 126 (292)
T ss_pred CCCCChhHHHHHHHHHHHhcCCCCCcCceEEEeeccCcccccccccceeec---ceeecCccCHHHHHHHHHHHHcCc--
Confidence 334445555 4555532 23457999998854322 1222445 689999999999999988765321
Q ss_pred ccccCCCCCCCccEEEEEcCccccCC-----CCCCccEEEEccccccC
Q 002218 765 KLDAAVPCTDVKSAVLFDGSITVFDS-----RLHGFDIGTCLEVIEHM 807 (952)
Q Consensus 765 ~~~~l~Pr~~~~nVtf~qGDa~dLpf-----~d~sFDVVVcieVIEHL 807 (952)
.....|++....-.+--| ..+.||+++|.--+|--
T Consensus 127 --------~l~~~I~lr~qk~~~~if~giig~nE~yd~tlCNPPFh~s 166 (292)
T COG3129 127 --------GLERAIRLRRQKDSDAIFNGIIGKNERYDATLCNPPFHDS 166 (292)
T ss_pred --------chhhheeEEeccCccccccccccccceeeeEecCCCcchh
Confidence 111235554332222111 25679999998766543
No 378
>cd08232 idonate-5-DH L-idonate 5-dehydrogenase. L-idonate 5-dehydrogenase (L-ido 5-DH ) catalyzes the conversion of L-lodonate to 5-ketogluconate in the metabolism of L-Idonate to 6-P-gluconate. In E. coli, this GntII pathway is a subsidiary pathway to the canonical GntI system, which also phosphorylates and transports gluconate. L-ido 5-DH is found in an operon with a regulator indR, transporter idnT, 5-keto-D-gluconate 5-reductase, and Gnt kinase. L-ido 5-DH is a zinc-dependent alcohol dehydrogenase-like protein. The alcohol dehydrogenase ADH-like family of proteins is a diverse group of proteins related to the first identified member, class I mammalian ADH. This group is also called the medium chain dehydrogenases/reductase family (MDR) which displays a broad range of activities and are distinguished from the smaller short chain dehydrogenases(~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domai
Probab=36.02 E-value=1.2e+02 Score=33.06 Aligned_cols=46 Identities=20% Similarity=0.301 Sum_probs=33.1
Q ss_pred hcCCCCEEEEEcCcc-chHHHHHhcCCCCCceEEEEeCChHHHHHHHH
Q 002218 710 KESCATTLVDFGCGS-GSLLDSLLDYPTALEKIVGVDISQKSLSRAAK 756 (952)
Q Consensus 710 ~~~k~krVLDIGCGe-G~ll~~LAr~g~~~~qVVGVDISeemLe~Ark 756 (952)
...++.+||-.|||. |..+..+++..+ ..++++++.+++..+.+++
T Consensus 162 ~~~~~~~VLI~g~g~vG~~~~~lak~~G-~~~v~~~~~s~~~~~~~~~ 208 (339)
T cd08232 162 GDLAGKRVLVTGAGPIGALVVAAARRAG-AAEIVATDLADAPLAVARA 208 (339)
T ss_pred CCCCCCEEEEECCCHHHHHHHHHHHHcC-CcEEEEECCCHHHHHHHHH
Confidence 333678899999886 777777776542 1279999998888876643
No 379
>PRK06035 3-hydroxyacyl-CoA dehydrogenase; Validated
Probab=35.69 E-value=1.6e+02 Score=32.51 Aligned_cols=42 Identities=19% Similarity=0.259 Sum_probs=32.0
Q ss_pred CEEEEEcCcc--chHHHHHhcCCCCCceEEEEeCChHHHHHHHHHHh
Q 002218 715 TTLVDFGCGS--GSLLDSLLDYPTALEKIVGVDISQKSLSRAAKIIH 759 (952)
Q Consensus 715 krVLDIGCGe--G~ll~~LAr~g~~~~qVVGVDISeemLe~ArkrLs 759 (952)
++|.=||+|. +.++..++..| .+|+.+|.+++.++.+++++.
T Consensus 4 ~~I~ViGaG~mG~~iA~~la~~G---~~V~l~d~~~~~l~~~~~~i~ 47 (291)
T PRK06035 4 KVIGVVGSGVMGQGIAQVFARTG---YDVTIVDVSEEILKNAMELIE 47 (291)
T ss_pred cEEEEECccHHHHHHHHHHHhcC---CeEEEEeCCHHHHHHHHHHHH
Confidence 5788899994 33556667776 789999999999988766543
No 380
>TIGR00518 alaDH alanine dehydrogenase. The family of known L-alanine dehydrogenases includes representatives from the Proteobacteria, Firmicutes, and Cyanobacteria, all with about 50 % identity or better. An outlier to this group in both sequence and gap pattern is the homolog from Helicobacter pylori, an epsilon division Proteobacteria, which must be considered a putative alanine dehydrogenase. Related proteins include saccharopine dehydrogenase and the N-terminal half of the NAD(P) transhydrogenase alpha subunit. All of these related proteins bind NAD and/or NADP.
Probab=33.96 E-value=82 Score=36.46 Aligned_cols=42 Identities=14% Similarity=0.140 Sum_probs=29.1
Q ss_pred CCCEEEEEcCc-cchHHHHHhcCCCCCceEEEEeCChHHHHHHHH
Q 002218 713 CATTLVDFGCG-SGSLLDSLLDYPTALEKIVGVDISQKSLSRAAK 756 (952)
Q Consensus 713 k~krVLDIGCG-eG~ll~~LAr~g~~~~qVVGVDISeemLe~Ark 756 (952)
.+.+|+=+|+| .|..+...++..+ .+|+.+|.+++.++.+.+
T Consensus 166 ~~~~VlViGaG~vG~~aa~~a~~lG--a~V~v~d~~~~~~~~l~~ 208 (370)
T TIGR00518 166 EPGDVTIIGGGVVGTNAAKMANGLG--ATVTILDINIDRLRQLDA 208 (370)
T ss_pred CCceEEEEcCCHHHHHHHHHHHHCC--CeEEEEECCHHHHHHHHH
Confidence 56789999998 4555555444332 689999999877665543
No 381
>PRK10669 putative cation:proton antiport protein; Provisional
Probab=32.90 E-value=2.1e+02 Score=34.68 Aligned_cols=92 Identities=15% Similarity=0.077 Sum_probs=54.5
Q ss_pred CEEEEEcCcc-ch-HHHHHhcCCCCCceEEEEeCChHHHHHHHHHHhhhhhcccccCCCCCCCccEEEEEcCccccCC--
Q 002218 715 TTLVDFGCGS-GS-LLDSLLDYPTALEKIVGVDISQKSLSRAAKIIHSKLSKKLDAAVPCTDVKSAVLFDGSITVFDS-- 790 (952)
Q Consensus 715 krVLDIGCGe-G~-ll~~LAr~g~~~~qVVGVDISeemLe~ArkrLsa~la~~~~~l~Pr~~~~nVtf~qGDa~dLpf-- 790 (952)
.+++=+|||. |+ .++.|.+++ ..++.||.+++.++.+++. ....+.||+.+...
T Consensus 418 ~hiiI~G~G~~G~~la~~L~~~g---~~vvvId~d~~~~~~~~~~-------------------g~~~i~GD~~~~~~L~ 475 (558)
T PRK10669 418 NHALLVGYGRVGSLLGEKLLAAG---IPLVVIETSRTRVDELRER-------------------GIRAVLGNAANEEIMQ 475 (558)
T ss_pred CCEEEECCChHHHHHHHHHHHCC---CCEEEEECCHHHHHHHHHC-------------------CCeEEEcCCCCHHHHH
Confidence 5677777774 33 234444555 7899999999988888541 46788899987432
Q ss_pred --CCCCccEEEEccccccCChhHH-HHHHHHHHHccCCC-EEEEEecC
Q 002218 791 --RLHGFDIGTCLEVIEHMEEDEA-SQFGNIVLSSFRPR-ILIVSTPN 834 (952)
Q Consensus 791 --~d~sFDVVVcieVIEHL~dD~l-~~L~eeI~RvLKPG-~LIISTPN 834 (952)
.....|.++..- +++.. ..+.. ..+...|. .++.-+.+
T Consensus 476 ~a~i~~a~~viv~~-----~~~~~~~~iv~-~~~~~~~~~~iiar~~~ 517 (558)
T PRK10669 476 LAHLDCARWLLLTI-----PNGYEAGEIVA-SAREKRPDIEIIARAHY 517 (558)
T ss_pred hcCccccCEEEEEc-----CChHHHHHHHH-HHHHHCCCCeEEEEECC
Confidence 345788665421 12222 22332 34556777 55544433
No 382
>COG5379 BtaA S-adenosylmethionine:diacylglycerol 3-amino-3-carboxypropyl transferase [Lipid metabolism]
Probab=32.75 E-value=90 Score=35.90 Aligned_cols=59 Identities=10% Similarity=0.114 Sum_probs=51.0
Q ss_pred CccEEEEEcCccccCC--CCCCccEEEEccccccCChhHHHHHHHHHHHccCCC-EEEEEec
Q 002218 775 VKSAVLFDGSITVFDS--RLHGFDIGTCLEVIEHMEEDEASQFGNIVLSSFRPR-ILIVSTP 833 (952)
Q Consensus 775 ~~nVtf~qGDa~dLpf--~d~sFDVVVcieVIEHL~dD~l~~L~eeI~RvLKPG-~LIISTP 833 (952)
..+|.+.++|+.++-. +.++.|.++..++-.+|++.++..+..++.+-+.|| .+|+-|.
T Consensus 306 ~~RV~ihha~~iE~l~~k~ag~Vdr~iLlDaqdwmtd~qln~lws~isrta~~gA~VifRta 367 (414)
T COG5379 306 LRRVAIHHADIIELLAGKPAGNVDRYILLDAQDWMTDGQLNSLWSEISRTAEAGARVIFRTA 367 (414)
T ss_pred hhheeeecccHHHHhccCCCCCcceEEEecchhhcccchHHHHHHHHhhccCCCcEEEEecc
Confidence 3478999999988755 578999999999999999999999999999999999 7776543
No 383
>COG0287 TyrA Prephenate dehydrogenase [Amino acid transport and metabolism]
Probab=32.57 E-value=1e+02 Score=34.55 Aligned_cols=92 Identities=16% Similarity=0.142 Sum_probs=55.8
Q ss_pred CEEEEEcCc--cchHHHHHhcCCCCCceEEEEeCChHHHHHHHHHHhhhhhcccccCCCCCCCccEEEEEcCccccCCCC
Q 002218 715 TTLVDFGCG--SGSLLDSLLDYPTALEKIVGVDISQKSLSRAAKIIHSKLSKKLDAAVPCTDVKSAVLFDGSITVFDSRL 792 (952)
Q Consensus 715 krVLDIGCG--eG~ll~~LAr~g~~~~qVVGVDISeemLe~ArkrLsa~la~~~~~l~Pr~~~~nVtf~qGDa~dLpf~d 792 (952)
.+|+=+|.| -|.+++.|.+.| ....++|.|.+...++.+.+. .+.....+. ......
T Consensus 4 ~~v~IvG~GliG~s~a~~l~~~g-~~v~i~g~d~~~~~~~~a~~l-------------------gv~d~~~~~-~~~~~~ 62 (279)
T COG0287 4 MKVGIVGLGLMGGSLARALKEAG-LVVRIIGRDRSAATLKAALEL-------------------GVIDELTVA-GLAEAA 62 (279)
T ss_pred cEEEEECCchHHHHHHHHHHHcC-CeEEEEeecCcHHHHHHHhhc-------------------Ccccccccc-hhhhhc
Confidence 578888888 467778887777 456689999999888887532 111100000 001123
Q ss_pred CCccEEEEccccccCChhHHHHHHHHHHHccCCCEEEEEe
Q 002218 793 HGFDIGTCLEVIEHMEEDEASQFGNIVLSSFRPRILIVST 832 (952)
Q Consensus 793 ~sFDVVVcieVIEHL~dD~l~~L~eeI~RvLKPG~LIIST 832 (952)
...|+|+..-=++.. ..+.+++...|++|.++..+
T Consensus 63 ~~aD~VivavPi~~~-----~~~l~~l~~~l~~g~iv~Dv 97 (279)
T COG0287 63 AEADLVIVAVPIEAT-----EEVLKELAPHLKKGAIVTDV 97 (279)
T ss_pred ccCCEEEEeccHHHH-----HHHHHHhcccCCCCCEEEec
Confidence 467888775444333 34455677788888665543
No 384
>cd01080 NAD_bind_m-THF_DH_Cyclohyd NADP binding domain of methylene-tetrahydrofolate dehydrogenase/cyclohydrolase. NADP binding domain of the Methylene-Tetrahydrofolate Dehydrogenase/cyclohydrolase (m-THF DH/cyclohydrolase) bifunctional enzyme. Tetrahydrofolate is a versatile carrier of activated one-carbon units. The major one-carbon folate donors are N-5 methyltetrahydrofolate, N5,N10-m-THF, and N10-formayltetrahydrofolate. The oxidation of metabolic intermediate m-THF to m-THF requires the enzyme m-THF DH. In addition, most DHs also have an associated cyclohydrolase activity which catalyzes its hydrolysis to N10-formyltetrahydrofolate. m-THF DH is typically found as part of a multifunctional protein in eukaryotes. NADP-dependent m-THF DH in mammals, birds and yeast are components of a trifunctional enzyme with DH, cyclohydrolase, and synthetase activities. Certain eukaryotic cells also contain homodimeric bifunctional DH/cyclodrolase form. In bacteria, monofucntional DH, as well a
Probab=31.65 E-value=1.6e+02 Score=30.56 Aligned_cols=55 Identities=16% Similarity=0.116 Sum_probs=42.9
Q ss_pred hcCCchhHHHHHHHHHHHhhcCCCCEEEEEcCcc--ch-HHHHHhcCCCCCceEEEEeCCh
Q 002218 691 ALFSPPLSKQRVEYALQHIKESCATTLVDFGCGS--GS-LLDSLLDYPTALEKIVGVDISQ 748 (952)
Q Consensus 691 ~~F~PPL~~QR~efVldlL~~~k~krVLDIGCGe--G~-ll~~LAr~g~~~~qVVGVDISe 748 (952)
..|.|.+...-++.+.+......+++||=+|.|. |. .+..|.+.+ .+|+.++-..
T Consensus 21 ~~~~p~~~~a~v~l~~~~~~~l~gk~vlViG~G~~~G~~~a~~L~~~g---~~V~v~~r~~ 78 (168)
T cd01080 21 PGFIPCTPAGILELLKRYGIDLAGKKVVVVGRSNIVGKPLAALLLNRN---ATVTVCHSKT 78 (168)
T ss_pred CCccCChHHHHHHHHHHcCCCCCCCEEEEECCcHHHHHHHHHHHhhCC---CEEEEEECCc
Confidence 5788888888888777776667889999999995 77 566676766 5788888653
No 385
>PRK11730 fadB multifunctional fatty acid oxidation complex subunit alpha; Reviewed
Probab=31.42 E-value=3.3e+02 Score=34.46 Aligned_cols=106 Identities=16% Similarity=0.101 Sum_probs=60.8
Q ss_pred CEEEEEcCcc--chHHHHHhcCCCCCceEEEEeCChHHHHHHHHHHhhhhhcccccC--CC---CCCCccEEEEEcCccc
Q 002218 715 TTLVDFGCGS--GSLLDSLLDYPTALEKIVGVDISQKSLSRAAKIIHSKLSKKLDAA--VP---CTDVKSAVLFDGSITV 787 (952)
Q Consensus 715 krVLDIGCGe--G~ll~~LAr~g~~~~qVVGVDISeemLe~ArkrLsa~la~~~~~l--~P---r~~~~nVtf~qGDa~d 787 (952)
++|.=||.|+ ...+..++..| .+|+-+|++++.++.+.+++...+....... .+ .....++++. .|...
T Consensus 314 ~~v~ViGaG~mG~gIA~~~a~~G---~~V~l~d~~~~~l~~~~~~~~~~l~~~~~~g~~~~~~~~~~~~~i~~~-~~~~~ 389 (715)
T PRK11730 314 KQAAVLGAGIMGGGIAYQSASKG---VPVIMKDINQKALDLGMTEAAKLLNKQVERGKIDGAKMAGVLSSIRPT-LDYAG 389 (715)
T ss_pred ceEEEECCchhHHHHHHHHHhCC---CeEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCChhhHHHHHhCeEEe-CCHHH
Confidence 5799999997 33445566777 8999999999999988777654433221110 00 0011234432 23221
Q ss_pred cCCCCCCccEEEEccccccCChhHHHHHHHHHHHccCCCEEEEE
Q 002218 788 FDSRLHGFDIGTCLEVIEHMEEDEASQFGNIVLSSFRPRILIVS 831 (952)
Q Consensus 788 Lpf~d~sFDVVVcieVIEHL~dD~l~~L~eeI~RvLKPG~LIIS 831 (952)
....|+|+=. +.|.+. ..+.+..++-++++|+.++.|
T Consensus 390 ----~~~aDlViEa-v~E~l~--~K~~vf~~l~~~~~~~~ilas 426 (715)
T PRK11730 390 ----FERVDVVVEA-VVENPK--VKAAVLAEVEQKVREDTILAS 426 (715)
T ss_pred ----hcCCCEEEec-ccCcHH--HHHHHHHHHHhhCCCCcEEEE
Confidence 2456766532 344443 233445569999999844443
No 386
>COG5379 BtaA S-adenosylmethionine:diacylglycerol 3-amino-3-carboxypropyl transferase [Lipid metabolism]
Probab=31.03 E-value=1.2e+02 Score=34.92 Aligned_cols=72 Identities=21% Similarity=0.275 Sum_probs=50.2
Q ss_pred hhhhhhcCCchhHHHHHHH---HHHHhhcCCCCEEEEEcCccchHHHHHhcCCCCCceEEEEeCChHHHHHHHHHHhh
Q 002218 686 DRMEQALFSPPLSKQRVEY---ALQHIKESCATTLVDFGCGSGSLLDSLLDYPTALEKIVGVDISQKSLSRAAKIIHS 760 (952)
Q Consensus 686 eRye~~~F~PPL~~QR~ef---VldlL~~~k~krVLDIGCGeG~ll~~LAr~g~~~~qVVGVDISeemLe~ArkrLsa 760 (952)
+|+-...|+--.|+|-.+- -.+.+....+.+|+-+|.|-...+.+|++.+ .+|..||+++..|...+-++.+
T Consensus 33 erlf~vlFsgLvYpqiwEDp~Vdmeam~~g~ghrivtigSGGcn~L~ylsr~P---a~id~VDlN~ahiAln~lklaA 107 (414)
T COG5379 33 ERLFGVLFSGLVYPQIWEDPSVDMEAMQLGIGHRIVTIGSGGCNMLAYLSRAP---ARIDVVDLNPAHIALNRLKLAA 107 (414)
T ss_pred HHHHHHHhcccccccccCCccccHHHHhcCCCcEEEEecCCcchHHHHhhcCC---ceeEEEeCCHHHHHHHHHHHHH
Confidence 5555555554444432211 1223344567899999999999999999887 8999999999988877655543
No 387
>PRK09496 trkA potassium transporter peripheral membrane component; Reviewed
Probab=30.30 E-value=3.6e+02 Score=31.16 Aligned_cols=91 Identities=15% Similarity=0.125 Sum_probs=53.9
Q ss_pred EEEEEcCccchHHHHHh----cCCCCCceEEEEeCChHHHHHHHHHHhhhhhcccccCCCCCCCccEEEEEcCccccCC-
Q 002218 716 TLVDFGCGSGSLLDSLL----DYPTALEKIVGVDISQKSLSRAAKIIHSKLSKKLDAAVPCTDVKSAVLFDGSITVFDS- 790 (952)
Q Consensus 716 rVLDIGCGeG~ll~~LA----r~g~~~~qVVGVDISeemLe~ArkrLsa~la~~~~~l~Pr~~~~nVtf~qGDa~dLpf- 790 (952)
+|+=+||| .++..++ +.+ ..|+.+|.+++.++.+++. ..+.++.||..+...
T Consensus 2 ~viIiG~G--~ig~~~a~~L~~~g---~~v~vid~~~~~~~~~~~~------------------~~~~~~~gd~~~~~~l 58 (453)
T PRK09496 2 KIIIVGAG--QVGYTLAENLSGEN---NDVTVIDTDEERLRRLQDR------------------LDVRTVVGNGSSPDVL 58 (453)
T ss_pred EEEEECCC--HHHHHHHHHHHhCC---CcEEEEECCHHHHHHHHhh------------------cCEEEEEeCCCCHHHH
Confidence 56777774 5554444 445 7899999999887766431 146778888865321
Q ss_pred ---CCCCccEEEEccccccCChhHHHHHHHHHHHccCCC-EEEEEecC
Q 002218 791 ---RLHGFDIGTCLEVIEHMEEDEASQFGNIVLSSFRPR-ILIVSTPN 834 (952)
Q Consensus 791 ---~d~sFDVVVcieVIEHL~dD~l~~L~eeI~RvLKPG-~LIISTPN 834 (952)
....+|.|++.-- ++....+...+.+.+.|. .+++-+.+
T Consensus 59 ~~~~~~~a~~vi~~~~-----~~~~n~~~~~~~r~~~~~~~ii~~~~~ 101 (453)
T PRK09496 59 REAGAEDADLLIAVTD-----SDETNMVACQIAKSLFGAPTTIARVRN 101 (453)
T ss_pred HHcCCCcCCEEEEecC-----ChHHHHHHHHHHHHhcCCCeEEEEECC
Confidence 2456888776432 233333333455666565 55555433
No 388
>PF05050 Methyltransf_21: Methyltransferase FkbM domain; InterPro: IPR007744 This entry contains proteins of unknown function.; PDB: 2PY6_A.
Probab=30.22 E-value=68 Score=31.02 Aligned_cols=38 Identities=13% Similarity=0.177 Sum_probs=23.9
Q ss_pred EEcCccc--hHHHHHh--cCCCCCceEEEEeCChHHHHHHHHH
Q 002218 719 DFGCGSG--SLLDSLL--DYPTALEKIVGVDISQKSLSRAAKI 757 (952)
Q Consensus 719 DIGCGeG--~ll~~LA--r~g~~~~qVVGVDISeemLe~Arkr 757 (952)
|||++.| .....+. ..+ +..+|+++|+++..++..+++
T Consensus 1 DvGA~~G~~~~~~~~~~~~~~-~~~~v~~~Ep~p~~~~~l~~~ 42 (167)
T PF05050_consen 1 DVGANIGFWSSTVYFLEKKCG-PGGRVHAFEPNPSNFEKLKRN 42 (167)
T ss_dssp EES-TTS--HHHHHHHHHHTS---SEEEEE---HHHHHHHHHH
T ss_pred CcccCCChhHHHHHHHHHHcC-CCCEEEEEECCHHHHHHHhHH
Confidence 8999999 5554443 232 347899999999998888776
No 389
>KOG2539 consensus Mitochondrial/chloroplast ribosome small subunit component [Translation, ribosomal structure and biogenesis]
Probab=29.98 E-value=1.8e+02 Score=35.21 Aligned_cols=110 Identities=18% Similarity=0.176 Sum_probs=63.5
Q ss_pred CCCCEEEEEcCccchHHHHHh--cCCCCCceEEEEeCChHHHHHHHHHHhhhhhcccccCCCCCCCccEEEEEcCccccC
Q 002218 712 SCATTLVDFGCGSGSLLDSLL--DYPTALEKIVGVDISQKSLSRAAKIIHSKLSKKLDAAVPCTDVKSAVLFDGSITVFD 789 (952)
Q Consensus 712 ~k~krVLDIGCGeG~ll~~LA--r~g~~~~qVVGVDISeemLe~ArkrLsa~la~~~~~l~Pr~~~~nVtf~qGDa~dLp 789 (952)
..+..+.|+|.|.|.-...+. ... ....++-||.+..|+......+... .+. +++ ...++.+... -+|
T Consensus 199 f~pd~~~dfgsg~~~~~~a~~~lwr~-t~~~~~~Vdrs~~~~~~~e~~lr~~-~~~---g~~--~v~~~~~~r~---~~p 268 (491)
T KOG2539|consen 199 FRPDLLRDFGSGAGNGGWAAVLLWRQ-TKREYSLVDRSRAMLKQSEKNLRDG-SHI---GEP--IVRKLVFHRQ---RLP 268 (491)
T ss_pred cChHHHHHHHhhcccchhhhhhhccc-ccceeEeeccchHHHHHHHHhhcCh-hhc---Cch--hccccchhcc---cCC
Confidence 456678888887665443332 222 2467999999999999987765420 000 000 0111122211 122
Q ss_pred C-CCCCccEEEEccccccCChhH--HHHHHHHHHHccCCC-EEEEE
Q 002218 790 S-RLHGFDIGTCLEVIEHMEEDE--ASQFGNIVLSSFRPR-ILIVS 831 (952)
Q Consensus 790 f-~d~sFDVVVcieVIEHL~dD~--l~~L~eeI~RvLKPG-~LIIS 831 (952)
. ..+.||+|+|...++|+.... .....+..++..++| .+++.
T Consensus 269 i~~~~~yDlvi~ah~l~~~~s~~~R~~v~~s~~r~~~r~g~~lViI 314 (491)
T KOG2539|consen 269 IDIKNGYDLVICAHKLHELGSKFSRLDVPESLWRKTDRSGYFLVII 314 (491)
T ss_pred CCcccceeeEEeeeeeeccCCchhhhhhhHHHHHhccCCCceEEEE
Confidence 2 235699999999999998533 223334456677888 44443
No 390
>PF11899 DUF3419: Protein of unknown function (DUF3419); InterPro: IPR021829 This family of proteins are functionally uncharacterised. This protein is found in bacteria and eukaryotes. Proteins in this family are typically between 398 to 802 amino acids in length.
Probab=29.85 E-value=1.3e+02 Score=35.44 Aligned_cols=47 Identities=17% Similarity=0.244 Sum_probs=37.5
Q ss_pred HHHhhcCCCCEEEEEcCccchHHHHHhcCCCCCceEEEEeCChHHHHHHH
Q 002218 706 LQHIKESCATTLVDFGCGSGSLLDSLLDYPTALEKIVGVDISQKSLSRAA 755 (952)
Q Consensus 706 ldlL~~~k~krVLDIGCGeG~ll~~LAr~g~~~~qVVGVDISeemLe~Ar 755 (952)
.+.|+..++.+||-|..|-...+.+|.+.+ .+|++||+++..+...+
T Consensus 28 ~~aL~i~~~d~vl~ItSaG~N~L~yL~~~P---~~I~aVDlNp~Q~aLle 74 (380)
T PF11899_consen 28 MEALNIGPDDRVLTITSAGCNALDYLLAGP---KRIHAVDLNPAQNALLE 74 (380)
T ss_pred HHHhCCCCCCeEEEEccCCchHHHHHhcCC---ceEEEEeCCHHHHHHHH
Confidence 345666788899999988888888877766 89999999997765543
No 391
>TIGR02441 fa_ox_alpha_mit fatty acid oxidation complex, alpha subunit, mitochondrial. Members represent alpha subunit of mitochondrial multifunctional fatty acid degradation enzyme complex. Subunit activities include: enoyl-CoA hydratase (EC 4.2.1.17) & 3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35). Some characterization in human, pig, and rat. The beta subunit has activity: acetyl-CoA C-acyltransferase (EC 2.3.1.16).
Probab=29.67 E-value=6.3e+02 Score=32.28 Aligned_cols=162 Identities=17% Similarity=0.140 Sum_probs=85.3
Q ss_pred CEEEEEcCccc--hHHHHHhcCCCCCceEEEEeCChHHHHHHHHHHhhhhhcccccC--CCC---CCCccEEEEEcCccc
Q 002218 715 TTLVDFGCGSG--SLLDSLLDYPTALEKIVGVDISQKSLSRAAKIIHSKLSKKLDAA--VPC---TDVKSAVLFDGSITV 787 (952)
Q Consensus 715 krVLDIGCGeG--~ll~~LAr~g~~~~qVVGVDISeemLe~ArkrLsa~la~~~~~l--~Pr---~~~~nVtf~qGDa~d 787 (952)
++|-=||+|+- ..+..++..| ..|+-+|++++.++.+.+++...++...... .+. ....++++. .|..
T Consensus 336 ~~v~ViGaG~MG~gIA~~~a~~G---~~V~l~d~~~~~l~~~~~~i~~~l~~~~~~g~~~~~~~~~~~~~i~~~-~~~~- 410 (737)
T TIGR02441 336 KTLAVLGAGLMGAGIAQVSVDKG---LKTVLKDATPAGLDRGQQQVFKGLNKKVKRKKITSLERDSILSNLTPT-LDYS- 410 (737)
T ss_pred cEEEEECCCHhHHHHHHHHHhCC---CcEEEecCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhCeEEe-CCHH-
Confidence 57999999953 3344566666 8999999999999998877765443321110 000 001233332 1222
Q ss_pred cCCCCCCccEEEEccccccCChhHHHHHHHHHHHccCCCEEEEE-ecCCchhHHHHhhccCccCCCCcchhhhccccccC
Q 002218 788 FDSRLHGFDIGTCLEVIEHMEEDEASQFGNIVLSSFRPRILIVS-TPNYEYNAILQKSSSTIQEDDPDEKTQLQSCKFRN 866 (952)
Q Consensus 788 Lpf~d~sFDVVVcieVIEHL~dD~l~~L~eeI~RvLKPG~LIIS-TPN~efN~lf~~L~~~ta~eYPde~~g~~~~~fRh 866 (952)
.....|+|+=. +.|.+. ..+.+..++-++++|+.++.| |-...-..+...+ ..|..-. ...|-+
T Consensus 411 ---~~~~aDlViEA-v~E~l~--~K~~vf~~l~~~~~~~~ilasNTSsl~i~~la~~~------~~p~r~i---g~Hff~ 475 (737)
T TIGR02441 411 ---GFKNADMVIEA-VFEDLS--LKHKVIKEVEAVVPPHCIIASNTSALPIKDIAAVS------SRPEKVI---GMHYFS 475 (737)
T ss_pred ---HhccCCeehhh-ccccHH--HHHHHHHHHHhhCCCCcEEEEcCCCCCHHHHHhhc------CCccceE---EEeccC
Confidence 12456666432 444443 234455579999999944443 3333333333322 1111101 111222
Q ss_pred CCCc--------cccCHHHHHHHHHHHHHHcCcEEEEE
Q 002218 867 HDHK--------FEWTRDQFNCWATELAARHNYSVEFS 896 (952)
Q Consensus 867 ~DHk--------FEWTReEFqsWae~La~q~GYsVefs 896 (952)
+-|. -..|-.+....+..++.+.|-.....
T Consensus 476 P~~~m~LvEvv~g~~Ts~~~~~~~~~~~~~lgk~pv~v 513 (737)
T TIGR02441 476 PVDKMQLLEIITHDGTSKDTLASAVAVGLKQGKVVIVV 513 (737)
T ss_pred CcccCceEEEeCCCCCCHHHHHHHHHHHHHCCCeEEEE
Confidence 3232 22566666667777888877766544
No 392
>COG0270 Dcm Site-specific DNA methylase [DNA replication, recombination, and repair]
Probab=29.54 E-value=1.1e+02 Score=34.81 Aligned_cols=69 Identities=14% Similarity=0.164 Sum_probs=49.8
Q ss_pred CCEEEEEcCccchHHHHHhcCCCCCceEEEEeCChHHHHHHHHHHhhhhhcccccCCCCCCCccEEEEEcCccccCCCC-
Q 002218 714 ATTLVDFGCGSGSLLDSLLDYPTALEKIVGVDISQKSLSRAAKIIHSKLSKKLDAAVPCTDVKSAVLFDGSITVFDSRL- 792 (952)
Q Consensus 714 ~krVLDIGCGeG~ll~~LAr~g~~~~qVVGVDISeemLe~ArkrLsa~la~~~~~l~Pr~~~~nVtf~qGDa~dLpf~d- 792 (952)
..+++|+=||-|.+...+.+.| ..-+.++|+++.+++.-+.+.. ......+|+.+.....
T Consensus 3 ~~~~idLFsG~GG~~lGf~~ag--f~~~~a~Eid~~a~~ty~~n~~-----------------~~~~~~~di~~~~~~~~ 63 (328)
T COG0270 3 KMKVIDLFAGIGGLSLGFEEAG--FEIVFANEIDPPAVATYKANFP-----------------HGDIILGDIKELDGEAL 63 (328)
T ss_pred CceEEeeccCCchHHHHHHhcC--CeEEEEEecCHHHHHHHHHhCC-----------------CCceeechHhhcChhhc
Confidence 4589999999999998888877 4668899999999888765431 1345556666544321
Q ss_pred -C-CccEEEEc
Q 002218 793 -H-GFDIGTCL 801 (952)
Q Consensus 793 -~-sFDVVVci 801 (952)
. .+|+++..
T Consensus 64 ~~~~~DvligG 74 (328)
T COG0270 64 RKSDVDVLIGG 74 (328)
T ss_pred cccCCCEEEeC
Confidence 1 78888874
No 393
>COG0686 Ald Alanine dehydrogenase [Amino acid transport and metabolism]
Probab=29.31 E-value=1.8e+02 Score=33.81 Aligned_cols=100 Identities=11% Similarity=0.128 Sum_probs=68.6
Q ss_pred CCCEEEEEcCc-cchHHHHHhcCCCCCceEEEEeCChHHHHHHHHHHhhhhhcccccCCCCCCCccEEEEEcCccccCCC
Q 002218 713 CATTLVDFGCG-SGSLLDSLLDYPTALEKIVGVDISQKSLSRAAKIIHSKLSKKLDAAVPCTDVKSAVLFDGSITVFDSR 791 (952)
Q Consensus 713 k~krVLDIGCG-eG~ll~~LAr~g~~~~qVVGVDISeemLe~ArkrLsa~la~~~~~l~Pr~~~~nVtf~qGDa~dLpf~ 791 (952)
.+.+|.=||-| -|..+..++--.+ .+|+-+|+|.+-|+.-...+. .++..+..+..++...
T Consensus 167 ~~~kv~iiGGGvvgtnaAkiA~glg--A~Vtild~n~~rl~~ldd~f~----------------~rv~~~~st~~~iee~ 228 (371)
T COG0686 167 LPAKVVVLGGGVVGTNAAKIAIGLG--ADVTILDLNIDRLRQLDDLFG----------------GRVHTLYSTPSNIEEA 228 (371)
T ss_pred CCccEEEECCccccchHHHHHhccC--CeeEEEecCHHHHhhhhHhhC----------------ceeEEEEcCHHHHHHH
Confidence 34678888888 4777766665443 899999999887776644321 2567777777666666
Q ss_pred CCCccEEEEccccccCChhHHHHHHHHHHHccCCCEEEEEe
Q 002218 792 LHGFDIGTCLEVIEHMEEDEASQFGNIVLSSFRPRILIVST 832 (952)
Q Consensus 792 d~sFDVVVcieVIEHL~dD~l~~L~eeI~RvLKPG~LIIST 832 (952)
....|+|+..-.|---. .+ ....+++...+|||.+|+..
T Consensus 229 v~~aDlvIgaVLIpgak-aP-kLvt~e~vk~MkpGsVivDV 267 (371)
T COG0686 229 VKKADLVIGAVLIPGAK-AP-KLVTREMVKQMKPGSVIVDV 267 (371)
T ss_pred hhhccEEEEEEEecCCC-Cc-eehhHHHHHhcCCCcEEEEE
Confidence 67899999865554433 22 34446789999999665544
No 394
>PRK07530 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=29.09 E-value=5.9e+02 Score=28.02 Aligned_cols=42 Identities=14% Similarity=0.093 Sum_probs=31.6
Q ss_pred CEEEEEcCccc--hHHHHHhcCCCCCceEEEEeCChHHHHHHHHHHh
Q 002218 715 TTLVDFGCGSG--SLLDSLLDYPTALEKIVGVDISQKSLSRAAKIIH 759 (952)
Q Consensus 715 krVLDIGCGeG--~ll~~LAr~g~~~~qVVGVDISeemLe~ArkrLs 759 (952)
++|.=||+|.- .++..+++.+ .+|+.+|.+++.++.+.+++.
T Consensus 5 ~kI~vIGaG~mG~~iA~~la~~G---~~V~l~d~~~~~~~~~~~~i~ 48 (292)
T PRK07530 5 KKVGVIGAGQMGNGIAHVCALAG---YDVLLNDVSADRLEAGLATIN 48 (292)
T ss_pred CEEEEECCcHHHHHHHHHHHHCC---CeEEEEeCCHHHHHHHHHHHH
Confidence 57888999843 3456667776 799999999999988765443
No 395
>KOG1099 consensus SAM-dependent methyltransferase/cell division protein FtsJ [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=28.30 E-value=83 Score=35.10 Aligned_cols=95 Identities=22% Similarity=0.253 Sum_probs=59.2
Q ss_pred CCCEEEEEcCccchHHHHHhcCC----C-C---CceEEEEeCChHHHHHHHHHHhhhhhcccccCCCCCCCccEEEEEcC
Q 002218 713 CATTLVDFGCGSGSLLDSLLDYP----T-A---LEKIVGVDISQKSLSRAAKIIHSKLSKKLDAAVPCTDVKSAVLFDGS 784 (952)
Q Consensus 713 k~krVLDIGCGeG~ll~~LAr~g----~-~---~~qVVGVDISeemLe~ArkrLsa~la~~~~~l~Pr~~~~nVtf~qGD 784 (952)
..++++|+....|.++..|.+.- . . ...|++||+.+- | -.+.|..+++|
T Consensus 41 gv~rvVDLCAAPGSWSQvlSrkL~~~~~~~~~~~~kIVaVDLQ~M----a-------------------PI~GV~qlq~D 97 (294)
T KOG1099|consen 41 GVKRVVDLCAAPGSWSQVLSRKLYKPLPSSGERDKKIVAVDLQPM----A-------------------PIEGVIQLQGD 97 (294)
T ss_pred hhhHHhhhhcCCCcHHHHHHHHHhccCCCcchhhccEEEEecccC----C-------------------ccCceEEeecc
Confidence 35789999999999998777532 0 1 123999997431 1 12367788899
Q ss_pred ccccC--------CCCCCccEEEEccc-----cccCChhHH-HHH---HHHHHHccCCCEEEE
Q 002218 785 ITVFD--------SRLHGFDIGTCLEV-----IEHMEEDEA-SQF---GNIVLSSFRPRILIV 830 (952)
Q Consensus 785 a~dLp--------f~d~sFDVVVcieV-----IEHL~dD~l-~~L---~eeI~RvLKPG~LII 830 (952)
++... |.....|+|+|-+. ||.+.+-.. +.+ ......+||||.-++
T Consensus 98 IT~~stae~Ii~hfggekAdlVvcDGAPDvTGlHd~DEy~Q~qLllaAl~i~t~Vlk~Gg~FV 160 (294)
T KOG1099|consen 98 ITSASTAEAIIEHFGGEKADLVVCDGAPDVTGLHDLDEYVQAQLLLAALNIATCVLKPGGSFV 160 (294)
T ss_pred cCCHhHHHHHHHHhCCCCccEEEeCCCCCccccccHHHHHHHHHHHHHHHHHhheecCCCeee
Confidence 87743 34568999999543 555553221 111 223468899993333
No 396
>PRK09260 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=27.96 E-value=8.4e+02 Score=26.81 Aligned_cols=42 Identities=26% Similarity=0.208 Sum_probs=31.4
Q ss_pred CEEEEEcCcc--chHHHHHhcCCCCCceEEEEeCChHHHHHHHHHHh
Q 002218 715 TTLVDFGCGS--GSLLDSLLDYPTALEKIVGVDISQKSLSRAAKIIH 759 (952)
Q Consensus 715 krVLDIGCGe--G~ll~~LAr~g~~~~qVVGVDISeemLe~ArkrLs 759 (952)
++|.=||+|. +.++..+++.+ .+|+.+|.+++.++.+.+++.
T Consensus 2 ~~V~VIG~G~mG~~iA~~la~~G---~~V~~~d~~~~~~~~~~~~~~ 45 (288)
T PRK09260 2 EKLVVVGAGVMGRGIAYVFAVSG---FQTTLVDIKQEQLESAQQEIA 45 (288)
T ss_pred cEEEEECccHHHHHHHHHHHhCC---CcEEEEeCCHHHHHHHHHHHH
Confidence 4678889883 33555666776 789999999999998876543
No 397
>COG2933 Predicted SAM-dependent methyltransferase [General function prediction only]
Probab=27.57 E-value=1.8e+02 Score=33.13 Aligned_cols=87 Identities=15% Similarity=0.155 Sum_probs=60.7
Q ss_pred CCCCEEEEEcCccchHHHHHhcCCCCCceEEEEeCChHHHHHHHHHHhhhhhcccccCCCCCCCccEEEEEcCccccCCC
Q 002218 712 SCATTLVDFGCGSGSLLDSLLDYPTALEKIVGVDISQKSLSRAAKIIHSKLSKKLDAAVPCTDVKSAVLFDGSITVFDSR 791 (952)
Q Consensus 712 ~k~krVLDIGCGeG~ll~~LAr~g~~~~qVVGVDISeemLe~ArkrLsa~la~~~~~l~Pr~~~~nVtf~qGDa~dLpf~ 791 (952)
.++...+|+|.-.|.++..|.+++ ..|++||.-+ | |. .+. ....|+-...|-..+.+.
T Consensus 210 ~~~M~avDLGAcPGGWTyqLVkr~---m~V~aVDng~-m---a~-sL~--------------dtg~v~h~r~DGfk~~P~ 267 (358)
T COG2933 210 APGMWAVDLGACPGGWTYQLVKRN---MRVYAVDNGP-M---AQ-SLM--------------DTGQVTHLREDGFKFRPT 267 (358)
T ss_pred cCCceeeecccCCCccchhhhhcc---eEEEEeccch-h---hh-hhh--------------cccceeeeeccCcccccC
Confidence 477899999999999999999988 8999999543 2 21 111 123567777777666655
Q ss_pred CCCccEEEEccccccCChhHHHHHHHHHHHccCCC
Q 002218 792 LHGFDIGTCLEVIEHMEEDEASQFGNIVLSSFRPR 826 (952)
Q Consensus 792 d~sFDVVVcieVIEHL~dD~l~~L~eeI~RvLKPG 826 (952)
....|-.+|-.| ++-.....-|...|..|
T Consensus 268 r~~idWmVCDmV------EkP~rv~~li~~Wl~nG 296 (358)
T COG2933 268 RSNIDWMVCDMV------EKPARVAALIAKWLVNG 296 (358)
T ss_pred CCCCceEEeehh------cCcHHHHHHHHHHHHcc
Confidence 677899988666 22233444577777776
No 398
>PRK12921 2-dehydropantoate 2-reductase; Provisional
Probab=27.20 E-value=3.1e+02 Score=29.87 Aligned_cols=35 Identities=14% Similarity=0.111 Sum_probs=24.4
Q ss_pred EEEEEcCccch--HHHHHhcCCCCCceEEEEeCChHHHHHH
Q 002218 716 TLVDFGCGSGS--LLDSLLDYPTALEKIVGVDISQKSLSRA 754 (952)
Q Consensus 716 rVLDIGCGeG~--ll~~LAr~g~~~~qVVGVDISeemLe~A 754 (952)
+|+=+|+|... ++..|++.+ .+|+.++. ++.++..
T Consensus 2 kI~IiG~G~iG~~~a~~L~~~g---~~V~~~~r-~~~~~~~ 38 (305)
T PRK12921 2 RIAVVGAGAVGGTFGGRLLEAG---RDVTFLVR-PKRAKAL 38 (305)
T ss_pred eEEEECCCHHHHHHHHHHHHCC---CceEEEec-HHHHHHH
Confidence 57888998533 556677766 68999998 6555544
No 399
>cd01065 NAD_bind_Shikimate_DH NAD(P) binding domain of Shikimate dehydrogenase. Shikimate dehydrogenase (DH) is an amino acid DH family member. Shikimate pathway links metabolism of carbohydrates to de novo biosynthesis of aromatic amino acids, quinones and folate. It is essential in plants, bacteria, and fungi but absent in mammals, thus making enzymes involved in this pathway ideal targets for broad spectrum antibiotics and herbicides. Shikimate DH catalyzes the reduction of 3-hydroshikimate to shikimate using the cofactor NADH. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids to keto acids with NAD(P)+ as a cofactor. The NAD(P)-binding Rossmann
Probab=27.20 E-value=2.5e+02 Score=27.32 Aligned_cols=44 Identities=18% Similarity=0.170 Sum_probs=29.3
Q ss_pred CCCCEEEEEcCcc--chHHHHHhcCCCCCceEEEEeCChHHHHHHHHH
Q 002218 712 SCATTLVDFGCGS--GSLLDSLLDYPTALEKIVGVDISQKSLSRAAKI 757 (952)
Q Consensus 712 ~k~krVLDIGCGe--G~ll~~LAr~g~~~~qVVGVDISeemLe~Arkr 757 (952)
.+.++|+-+|||. ...+..|++.+ ..+|+.+|.+++..+...+.
T Consensus 17 ~~~~~i~iiG~G~~g~~~a~~l~~~g--~~~v~v~~r~~~~~~~~~~~ 62 (155)
T cd01065 17 LKGKKVLILGAGGAARAVAYALAELG--AAKIVIVNRTLEKAKALAER 62 (155)
T ss_pred CCCCEEEEECCcHHHHHHHHHHHHCC--CCEEEEEcCCHHHHHHHHHH
Confidence 3568999999974 23344555553 26899999998766654443
No 400
>PF12242 Eno-Rase_NADH_b: NAD(P)H binding domain of trans-2-enoyl-CoA reductase; PDB: 3ZU5_A 3ZU3_A 3ZU4_A 3ZU2_A 3S8M_A.
Probab=27.11 E-value=95 Score=29.05 Aligned_cols=49 Identities=18% Similarity=0.236 Sum_probs=24.8
Q ss_pred HHHHHHHHHhhcCCCCEEEEEcCccchHHH-HHhcCCCCCceEEEEeCCh
Q 002218 700 QRVEYALQHIKESCATTLVDFGCGSGSLLD-SLLDYPTALEKIVGVDISQ 748 (952)
Q Consensus 700 QR~efVldlL~~~k~krVLDIGCGeG~ll~-~LAr~g~~~~qVVGVDISe 748 (952)
+..+++...-....+++||-|||.+|+-+. .++...+.....+||-...
T Consensus 25 ~qI~yvk~~~~~~GpK~VLViGaStGyGLAsRIa~aFg~gA~TiGV~fEk 74 (78)
T PF12242_consen 25 NQIEYVKSQGKINGPKKVLVIGASTGYGLASRIAAAFGAGADTIGVSFEK 74 (78)
T ss_dssp HHHHHHHHC---TS-SEEEEES-SSHHHHHHHHHHHHCC--EEEEEE---
T ss_pred HHHHHHHhcCCCCCCceEEEEecCCcccHHHHHHHHhcCCCCEEEEeecc
Confidence 445566554344566999999999998552 2222111237888887643
No 401
>TIGR02437 FadB fatty oxidation complex, alpha subunit FadB. Members represent alpha subunit of multifunctional enzyme complex of the fatty acid degradation cycle. Activities include: enoyl-CoA hydratase (EC 4.2.1.17), dodecenoyl-CoA delta-isomerase activity (EC 5.3.3.8), 3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35), 3-hydroxybutyryl-CoA epimerase (EC 5.1.2.3). A representative is E. coli FadB. This model excludes the FadJ family represented by SP:P77399.
Probab=26.73 E-value=4.6e+02 Score=33.28 Aligned_cols=107 Identities=19% Similarity=0.129 Sum_probs=61.9
Q ss_pred CCEEEEEcCccc--hHHHHHhcCCCCCceEEEEeCChHHHHHHHHHHhhhhhcccccC--CCC---CCCccEEEEEcCcc
Q 002218 714 ATTLVDFGCGSG--SLLDSLLDYPTALEKIVGVDISQKSLSRAAKIIHSKLSKKLDAA--VPC---TDVKSAVLFDGSIT 786 (952)
Q Consensus 714 ~krVLDIGCGeG--~ll~~LAr~g~~~~qVVGVDISeemLe~ArkrLsa~la~~~~~l--~Pr---~~~~nVtf~qGDa~ 786 (952)
-++|.=||.|+- ..+..++..| ..|+-+|++++.++.+.+++...+....... .+. ....+++... |..
T Consensus 313 i~~v~ViGaG~mG~gIA~~~a~~G---~~V~l~d~~~~~l~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~-~~~ 388 (714)
T TIGR02437 313 VKQAAVLGAGIMGGGIAYQSASKG---TPIVMKDINQHSLDLGLTEAAKLLNKQVERGRITPAKMAGVLNGITPTL-SYA 388 (714)
T ss_pred cceEEEECCchHHHHHHHHHHhCC---CeEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCChhhHHHHHhCeEEeC-CHH
Confidence 357999999953 3445566777 8999999999999988877654433321110 000 0012333321 221
Q ss_pred ccCCCCCCccEEEEccccccCChhHHHHHHHHHHHccCCCEEEEE
Q 002218 787 VFDSRLHGFDIGTCLEVIEHMEEDEASQFGNIVLSSFRPRILIVS 831 (952)
Q Consensus 787 dLpf~d~sFDVVVcieVIEHL~dD~l~~L~eeI~RvLKPG~LIIS 831 (952)
.....|+|+=. +.|.+. - .+.+..++-++++|+.++.|
T Consensus 389 ----~~~~aDlViEa-v~E~l~-~-K~~vf~~l~~~~~~~~ilas 426 (714)
T TIGR02437 389 ----GFDNVDIVVEA-VVENPK-V-KAAVLAEVEQHVREDAILAS 426 (714)
T ss_pred ----HhcCCCEEEEc-CcccHH-H-HHHHHHHHHhhCCCCcEEEE
Confidence 13467777543 455554 2 33444579999999944443
No 402
>PF09263 PEX-2N: Peroxisome biogenesis factor 1, N-terminal ; InterPro: IPR015343 This domain adopts a Cdc48 domain 2-like fold, with a beta-alpha-beta(3) arrangement. It has been suggested that this domain may be involved in interactions with ubiquitin, ubiquitin-like protein modifiers, or ubiquitin-like domains, such as Ubx. Furthermore, the domain may possess a putative adaptor or substrate binding site, allowing for peroxisomal biogenesis, membrane fusion and protein translocation []. ; PDB: 1WLF_A.
Probab=26.41 E-value=42 Score=31.75 Aligned_cols=17 Identities=18% Similarity=0.536 Sum_probs=12.5
Q ss_pred HHHHHhcCCCCCCeEEE
Q 002218 256 DVIARNLDQTDGNKILV 272 (952)
Q Consensus 256 ~~ia~~l~~~d~~~v~~ 272 (952)
.-++++||++||.+|++
T Consensus 66 rqlgeKLGl~dGeQvfL 82 (87)
T PF09263_consen 66 RQLGEKLGLSDGEQVFL 82 (87)
T ss_dssp HHHHHHTT--TT-EEEE
T ss_pred HHHHHhhCCCcCCeEee
Confidence 35899999999999998
No 403
>TIGR00497 hsdM type I restriction system adenine methylase (hsdM). Function: methylation of specific adenine residues; required for both restriction and modification activities. The ECOR124/3 I enzyme recognizes 5'GAA(N7)RTCG. for E.coli see (J. Mol. Biol. 257: 960-969 (1996)).
Probab=26.04 E-value=6e+02 Score=30.64 Aligned_cols=55 Identities=22% Similarity=0.316 Sum_probs=38.6
Q ss_pred HHHHHhhcC--CCCEEEEEcCccchHHHHHhc---CCCCCceEEEEeCChHHHHHHHHHH
Q 002218 704 YALQHIKES--CATTLVDFGCGSGSLLDSLLD---YPTALEKIVGVDISQKSLSRAAKII 758 (952)
Q Consensus 704 fVldlL~~~--k~krVLDIGCGeG~ll~~LAr---~g~~~~qVVGVDISeemLe~ArkrL 758 (952)
.+.+++... +...|.|.-||+|.++....+ .+.....++|-+....+...|+.++
T Consensus 206 l~~~~~~~~~dp~~~~~Dp~~Gsg~~L~~~~~~~~~~qe~~~~~gqe~~~~~~~~a~mnm 265 (501)
T TIGR00497 206 LLARIAIGKKDTVDDVYDMACGSGSLLLQVIKVLGEKTSLVSYYGQEINHTTYNLCRMNM 265 (501)
T ss_pred HHHHHhccCCCCCCcccccccchHHHHHHHHHHhcccccceeEEEEeCchHHHHHHHHHH
Confidence 344444432 457899999999999865432 2222357999999999999887653
No 404
>PRK07502 cyclohexadienyl dehydrogenase; Validated
Probab=25.70 E-value=2.8e+02 Score=30.85 Aligned_cols=40 Identities=28% Similarity=0.319 Sum_probs=28.7
Q ss_pred CEEEEEcCcc--chHHHHHhcCCCCCceEEEEeCChHHHHHHH
Q 002218 715 TTLVDFGCGS--GSLLDSLLDYPTALEKIVGVDISQKSLSRAA 755 (952)
Q Consensus 715 krVLDIGCGe--G~ll~~LAr~g~~~~qVVGVDISeemLe~Ar 755 (952)
.+|.=||+|. +.++..|.+.+ ...+|+++|.+++.++.++
T Consensus 7 ~~I~IIG~G~mG~sla~~l~~~g-~~~~V~~~dr~~~~~~~a~ 48 (307)
T PRK07502 7 DRVALIGIGLIGSSLARAIRRLG-LAGEIVGADRSAETRARAR 48 (307)
T ss_pred cEEEEEeeCHHHHHHHHHHHhcC-CCcEEEEEECCHHHHHHHH
Confidence 5788899986 34555666655 2248999999998777664
No 405
>KOG1098 consensus Putative SAM-dependent rRNA methyltransferase SPB1 [RNA processing and modification; General function prediction only]
Probab=25.41 E-value=79 Score=39.40 Aligned_cols=36 Identities=25% Similarity=0.280 Sum_probs=29.8
Q ss_pred CCCEEEEEcCccchHHHHHhcCCCCCceEEEEeCCh
Q 002218 713 CATTLVDFGCGSGSLLDSLLDYPTALEKIVGVDISQ 748 (952)
Q Consensus 713 k~krVLDIGCGeG~ll~~LAr~g~~~~qVVGVDISe 748 (952)
+...|||+||..|.++....+..+...-|+|||+-+
T Consensus 44 ~a~~vlDLcaAPG~W~QVA~q~~pv~slivGvDl~p 79 (780)
T KOG1098|consen 44 KAHVVLDLCAAPGGWLQVASQSMPVGSLIVGVDLVP 79 (780)
T ss_pred ccchheeeccCCcHHHHHHHHhCCCCceEEEeeeee
Confidence 567899999999999987777664557899999865
No 406
>PF02153 PDH: Prephenate dehydrogenase; InterPro: IPR003099 Members of this family are prephenate dehydrogenases 1.3.1.12 from EC involved in tyrosine biosynthesis. ; GO: 0004665 prephenate dehydrogenase (NADP+) activity, 0008977 prephenate dehydrogenase activity, 0006571 tyrosine biosynthetic process, 0055114 oxidation-reduction process; PDB: 2F1K_B 2PV7_A 3DZB_B 3KTD_B 3B1F_A 2G5C_D 3GGP_C 3GGG_C 3GGO_D.
Probab=25.31 E-value=1.1e+02 Score=33.34 Aligned_cols=78 Identities=10% Similarity=0.087 Sum_probs=44.1
Q ss_pred HHHHHhcCCCCCceEEEEeCChHHHHHHHHHHhhhhhcccccCCCCCCCccEEEEEcCccccCCCCCCccEEEEcccccc
Q 002218 727 LLDSLLDYPTALEKIVGVDISQKSLSRAAKIIHSKLSKKLDAAVPCTDVKSAVLFDGSITVFDSRLHGFDIGTCLEVIEH 806 (952)
Q Consensus 727 ll~~LAr~g~~~~qVVGVDISeemLe~ArkrLsa~la~~~~~l~Pr~~~~nVtf~qGDa~dLpf~d~sFDVVVcieVIEH 806 (952)
++..|.+.+ +..+|+|+|.++..++.|.+. +. +.-...+.. ....+|+|+..--
T Consensus 1 ~A~aL~~~g-~~~~v~g~d~~~~~~~~a~~~----------------g~--~~~~~~~~~----~~~~~DlvvlavP--- 54 (258)
T PF02153_consen 1 IALALRKAG-PDVEVYGYDRDPETLEAALEL----------------GI--IDEASTDIE----AVEDADLVVLAVP--- 54 (258)
T ss_dssp HHHHHHHTT-TTSEEEEE-SSHHHHHHHHHT----------------TS--SSEEESHHH----HGGCCSEEEE-S----
T ss_pred ChHHHHhCC-CCeEEEEEeCCHHHHHHHHHC----------------CC--eeeccCCHh----HhcCCCEEEEcCC---
Confidence 355677776 458999999999999888642 11 001111111 1245688876533
Q ss_pred CChhHHHHHHHHHHHccCCCEEEEEe
Q 002218 807 MEEDEASQFGNIVLSSFRPRILIVST 832 (952)
Q Consensus 807 L~dD~l~~L~eeI~RvLKPG~LIIST 832 (952)
.+....+.+++...+++|.+++.+
T Consensus 55 --~~~~~~~l~~~~~~~~~~~iv~Dv 78 (258)
T PF02153_consen 55 --VSAIEDVLEEIAPYLKPGAIVTDV 78 (258)
T ss_dssp --HHHHHHHHHHHHCGS-TTSEEEE-
T ss_pred --HHHHHHHHHHhhhhcCCCcEEEEe
Confidence 344445566788888888555543
No 407
>PRK12480 D-lactate dehydrogenase; Provisional
Probab=24.99 E-value=2.5e+02 Score=32.15 Aligned_cols=87 Identities=14% Similarity=0.208 Sum_probs=52.7
Q ss_pred CCCCEEEEEcCcc-ch-HHHHHhcCCCCCceEEEEeCChHHHHHHHHHHhhhhhcccccCCCCCCCccEEEEEcCccccC
Q 002218 712 SCATTLVDFGCGS-GS-LLDSLLDYPTALEKIVGVDISQKSLSRAAKIIHSKLSKKLDAAVPCTDVKSAVLFDGSITVFD 789 (952)
Q Consensus 712 ~k~krVLDIGCGe-G~-ll~~LAr~g~~~~qVVGVDISeemLe~ArkrLsa~la~~~~~l~Pr~~~~nVtf~qGDa~dLp 789 (952)
..+++|.=||+|. |. ++..|...| .+|++.|.++...... +. ...++.+
T Consensus 144 l~g~~VgIIG~G~IG~~vA~~L~~~G---~~V~~~d~~~~~~~~~-----------------------~~-~~~~l~e-- 194 (330)
T PRK12480 144 VKNMTVAIIGTGRIGAATAKIYAGFG---ATITAYDAYPNKDLDF-----------------------LT-YKDSVKE-- 194 (330)
T ss_pred cCCCEEEEECCCHHHHHHHHHHHhCC---CEEEEEeCChhHhhhh-----------------------hh-ccCCHHH--
Confidence 4677899999996 43 456666666 8999999887432110 00 0112211
Q ss_pred CCCCCccEEEEccccccCChh--HHHHHHHHHHHccCCCEEEEEec
Q 002218 790 SRLHGFDIGTCLEVIEHMEED--EASQFGNIVLSSFRPRILIVSTP 833 (952)
Q Consensus 790 f~d~sFDVVVcieVIEHL~dD--~l~~L~eeI~RvLKPG~LIISTP 833 (952)
.....|+|+. |++.. ....+.+.++..+|||.++|.+-
T Consensus 195 -ll~~aDiVil-----~lP~t~~t~~li~~~~l~~mk~gavlIN~a 234 (330)
T PRK12480 195 -AIKDADIISL-----HVPANKESYHLFDKAMFDHVKKGAILVNAA 234 (330)
T ss_pred -HHhcCCEEEE-----eCCCcHHHHHHHhHHHHhcCCCCcEEEEcC
Confidence 2345677654 44432 34566677899999996666554
No 408
>PF10354 DUF2431: Domain of unknown function (DUF2431); InterPro: IPR019446 This entry represents the N-terminal domain of a family of proteins whose function is not known.
Probab=24.23 E-value=4e+02 Score=27.66 Aligned_cols=101 Identities=15% Similarity=0.093 Sum_probs=54.2
Q ss_pred EcCccchHHHHHhcCCCCCceEEEE--eCChHHHHHHH---HHHhhhhhcccccCCCCCCCccEEE-EEcCccccCC---
Q 002218 720 FGCGSGSLLDSLLDYPTALEKIVGV--DISQKSLSRAA---KIIHSKLSKKLDAAVPCTDVKSAVL-FDGSITVFDS--- 790 (952)
Q Consensus 720 IGCGeG~ll~~LAr~g~~~~qVVGV--DISeemLe~Ar---krLsa~la~~~~~l~Pr~~~~nVtf-~qGDa~dLpf--- 790 (952)
||=|.-.|+..|++..+...++++. |-.++.++... .++... . ...+++ ..-|+..+..
T Consensus 3 vGeGdfSFs~sL~~~~~~~~~l~ATs~ds~~~l~~kY~~~~~nl~~L-~-----------~~g~~V~~~VDat~l~~~~~ 70 (166)
T PF10354_consen 3 VGEGDFSFSLSLARAFGSATNLVATSYDSEEELLQKYPDAEENLEEL-R-----------ELGVTVLHGVDATKLHKHFR 70 (166)
T ss_pred eeccchHHHHHHHHHcCCCCeEEEeecCchHHHHHhcccHHHHHHHH-h-----------hcCCccccCCCCCccccccc
Confidence 4555555666777664223455554 43333333322 232221 1 113333 3337766653
Q ss_pred -CCCCccEEEEccccccCC-------------hhHHHHHHHHHHHccCCC-EEEEEecC
Q 002218 791 -RLHGFDIGTCLEVIEHME-------------EDEASQFGNIVLSSFRPR-ILIVSTPN 834 (952)
Q Consensus 791 -~d~sFDVVVcieVIEHL~-------------dD~l~~L~eeI~RvLKPG-~LIISTPN 834 (952)
....||.|+-.+ -|.. ..-+..|.+....+|+++ .+.|+--+
T Consensus 71 ~~~~~FDrIiFNF--PH~G~~~~~~~~~i~~nr~Ll~~Ff~Sa~~~L~~~G~IhVTl~~ 127 (166)
T PF10354_consen 71 LKNQRFDRIIFNF--PHVGGGSEDGKRNIRLNRELLRGFFKSASQLLKPDGEIHVTLKD 127 (166)
T ss_pred ccCCcCCEEEEeC--CCCCCCccchhHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEeCC
Confidence 347899998754 3554 123456677788999996 66666544
No 409
>PRK08217 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=24.03 E-value=2.6e+02 Score=28.83 Aligned_cols=75 Identities=13% Similarity=0.047 Sum_probs=46.9
Q ss_pred CCCEEEEEcCccch--HH-HHHhcCCCCCceEEEEeCChHHHHHHHHHHhhhhhcccccCCCCCCCccEEEEEcCccccC
Q 002218 713 CATTLVDFGCGSGS--LL-DSLLDYPTALEKIVGVDISQKSLSRAAKIIHSKLSKKLDAAVPCTDVKSAVLFDGSITVFD 789 (952)
Q Consensus 713 k~krVLDIGCGeG~--ll-~~LAr~g~~~~qVVGVDISeemLe~ArkrLsa~la~~~~~l~Pr~~~~nVtf~qGDa~dLp 789 (952)
+++++|-.|++.|. .+ ..|++.+ .+|+.+|.++..++.+.+.+.. ...++.+++.|+.+..
T Consensus 4 ~~~~~lItG~~g~iG~~~a~~l~~~G---~~vi~~~r~~~~~~~~~~~~~~-------------~~~~~~~~~~D~~~~~ 67 (253)
T PRK08217 4 KDKVIVITGGAQGLGRAMAEYLAQKG---AKLALIDLNQEKLEEAVAECGA-------------LGTEVRGYAANVTDEE 67 (253)
T ss_pred CCCEEEEECCCchHHHHHHHHHHHCC---CEEEEEeCCHHHHHHHHHHHHh-------------cCCceEEEEcCCCCHH
Confidence 46789999974332 22 3455666 6899999998776665544321 1235777888876532
Q ss_pred C----------CCCCccEEEEccc
Q 002218 790 S----------RLHGFDIGTCLEV 803 (952)
Q Consensus 790 f----------~d~sFDVVVcieV 803 (952)
. ....+|+|+....
T Consensus 68 ~~~~~~~~~~~~~~~id~vi~~ag 91 (253)
T PRK08217 68 DVEATFAQIAEDFGQLNGLINNAG 91 (253)
T ss_pred HHHHHHHHHHHHcCCCCEEEECCC
Confidence 1 1146899988654
No 410
>TIGR02356 adenyl_thiF thiazole biosynthesis adenylyltransferase ThiF, E. coli subfamily. Members of the HesA/MoeB/ThiF family of proteins (pfam00899) include a number of members encoded in the midst of thiamine biosynthetic operons. This mix of known and putative ThiF proteins shows a deep split in phylogenetic trees, with the Escherichia. coli ThiF and the E. coli MoeB proteins seemingly more closely related than E. coli ThiF and Campylobacter (for example) ThiF. This model represents the more widely distributed clade of ThiF proteins such found in E. coli.
Probab=23.11 E-value=2.1e+02 Score=30.20 Aligned_cols=35 Identities=26% Similarity=0.202 Sum_probs=26.3
Q ss_pred cCCCCEEEEEcCcc-ch-HHHHHhcCCCCCceEEEEeCC
Q 002218 711 ESCATTLVDFGCGS-GS-LLDSLLDYPTALEKIVGVDIS 747 (952)
Q Consensus 711 ~~k~krVLDIGCGe-G~-ll~~LAr~g~~~~qVVGVDIS 747 (952)
+....+||=+|||. |. .+..|++.| ..+++-+|.+
T Consensus 18 kl~~~~VlviG~GglGs~ia~~La~~G--v~~i~lvD~d 54 (202)
T TIGR02356 18 RLLNSHVLIIGAGGLGSPAALYLAGAG--VGTIVIVDDD 54 (202)
T ss_pred HhcCCCEEEECCCHHHHHHHHHHHHcC--CCeEEEecCC
Confidence 34678999999993 44 556777776 3689999977
No 411
>PF05206 TRM13: Methyltransferase TRM13; InterPro: IPR007871 This entry consists of eukaryotic and bacterial proteins that specifically methylates guanosine-4 in various tRNAs with a Gly(CCG), His or Pro signatures []. The alignment contains some conserved cysteines and histidines that might form a zinc binding site.; GO: 0008168 methyltransferase activity, 0008033 tRNA processing
Probab=22.99 E-value=84 Score=34.96 Aligned_cols=36 Identities=22% Similarity=0.335 Sum_probs=28.1
Q ss_pred CCCEEEEEcCccchHHHHHhcCCC----CCceEEEEeCCh
Q 002218 713 CATTLVDFGCGSGSLLDSLLDYPT----ALEKIVGVDISQ 748 (952)
Q Consensus 713 k~krVLDIGCGeG~ll~~LAr~g~----~~~qVVGVDISe 748 (952)
+...++|+|||.|.++.+++.... +...++-||-..
T Consensus 18 ~~~~~vEfGaGrg~LS~~v~~~~~~~~~~~~~~~lIDR~~ 57 (259)
T PF05206_consen 18 PDSCFVEFGAGRGELSRWVAQALQEDKPSNSRFVLIDRAS 57 (259)
T ss_pred CCCEEEEECCCchHHHHHHHHHhhhcccCCccEEEEecCc
Confidence 556899999999999999886541 236789999644
No 412
>PRK08306 dipicolinate synthase subunit A; Reviewed
Probab=22.78 E-value=2.7e+02 Score=31.27 Aligned_cols=86 Identities=19% Similarity=0.234 Sum_probs=50.1
Q ss_pred CCCEEEEEcCcc-chHH-HHHhcCCCCCceEEEEeCChHHHHHHHHHHhhhhhcccccCCCCCCCccEEEEEcCccccCC
Q 002218 713 CATTLVDFGCGS-GSLL-DSLLDYPTALEKIVGVDISQKSLSRAAKIIHSKLSKKLDAAVPCTDVKSAVLFDGSITVFDS 790 (952)
Q Consensus 713 k~krVLDIGCGe-G~ll-~~LAr~g~~~~qVVGVDISeemLe~ArkrLsa~la~~~~~l~Pr~~~~nVtf~qGDa~dLpf 790 (952)
.+++|+=||.|. |..+ ..|.+.| .+|+.+|.++...+.++.. + .++. +..++..
T Consensus 151 ~g~kvlViG~G~iG~~~a~~L~~~G---a~V~v~~r~~~~~~~~~~~----------------G---~~~~--~~~~l~~ 206 (296)
T PRK08306 151 HGSNVLVLGFGRTGMTLARTLKALG---ANVTVGARKSAHLARITEM----------------G---LSPF--HLSELAE 206 (296)
T ss_pred CCCEEEEECCcHHHHHHHHHHHHCC---CEEEEEECCHHHHHHHHHc----------------C---Ceee--cHHHHHH
Confidence 578999999985 3333 3344455 7999999998765555321 1 1111 1122222
Q ss_pred CCCCccEEEEccccccCChhHHHHHHHHHHHccCCCEEEE
Q 002218 791 RLHGFDIGTCLEVIEHMEEDEASQFGNIVLSSFRPRILIV 830 (952)
Q Consensus 791 ~d~sFDVVVcieVIEHL~dD~l~~L~eeI~RvLKPG~LII 830 (952)
....+|+|+..- +. ..+.+.+...++||.+++
T Consensus 207 ~l~~aDiVI~t~-----p~---~~i~~~~l~~~~~g~vII 238 (296)
T PRK08306 207 EVGKIDIIFNTI-----PA---LVLTKEVLSKMPPEALII 238 (296)
T ss_pred HhCCCCEEEECC-----Ch---hhhhHHHHHcCCCCcEEE
Confidence 235799998742 21 123345778899994444
No 413
>PLN02256 arogenate dehydrogenase
Probab=22.67 E-value=4.5e+02 Score=29.74 Aligned_cols=38 Identities=13% Similarity=0.197 Sum_probs=27.8
Q ss_pred HhhcCCCCEEEEEcCcc--chHHHHHhcCCCCCceEEEEeCCh
Q 002218 708 HIKESCATTLVDFGCGS--GSLLDSLLDYPTALEKIVGVDISQ 748 (952)
Q Consensus 708 lL~~~k~krVLDIGCGe--G~ll~~LAr~g~~~~qVVGVDISe 748 (952)
.+......+|.=||+|. |.++..|.+.+ .+|+++|.+.
T Consensus 30 ~~~~~~~~kI~IIG~G~mG~slA~~L~~~G---~~V~~~d~~~ 69 (304)
T PLN02256 30 ELEKSRKLKIGIVGFGNFGQFLAKTFVKQG---HTVLATSRSD 69 (304)
T ss_pred hhccCCCCEEEEEeeCHHHHHHHHHHHhCC---CEEEEEECcc
Confidence 34445667899999984 45666666665 6899999886
No 414
>KOG0552 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=22.62 E-value=1.5e+02 Score=32.58 Aligned_cols=109 Identities=20% Similarity=0.291 Sum_probs=76.6
Q ss_pred cCCCCceeeeccCCCCCCccCCCCceeEEEEEEEEeecccchhhhhccccceE-EEeccCccchhhhhhhhhccccccce
Q 002218 561 AIPEHGIYCLSIGGPDSGIYPSNGCLSFISYSVSLVIEGETMKELLESREEFE-FEMGTGAVIPQVEVVTAQMSVGQSAC 639 (952)
Q Consensus 561 ~~~~~~~~~~~~~~~~~~~~p~~gs~~~i~y~~~l~~~~~~~~~~~e~~~~~~-fe~g~~a~~~~l~~v~~q~sv~q~~~ 639 (952)
..+.+++...+|.=-+ |=-|..|..|.|-|.-.|--.|+--.-.+. ...|. |..|.|-|+.-++..|+-|.||.-++
T Consensus 116 ~tl~~Gl~y~D~~vG~-G~~a~~G~rV~v~Y~Gkl~~~GkvFd~~~~-~kp~~~f~lg~g~VIkG~d~gv~GMkvGGkRr 193 (226)
T KOG0552|consen 116 RTLPGGLRYEDLRVGS-GPSAKKGKRVSVRYIGKLKGNGKVFDSNFG-GKPFKLFRLGSGEVIKGWDVGVEGMKVGGKRR 193 (226)
T ss_pred eecCCCcEEEEEEecC-CCCCCCCCEEEEEEEEEecCCCeEeecccC-CCCccccccCCCCCCchHHHhhhhhccCCeeE
Confidence 4677888888775333 999999999999999999865554333333 23455 99999999999999999999999988
Q ss_pred ecccCCchhhhhhhccCcccchhcccccccccceeeeeccc
Q 002218 640 FCKELPPQELILAAADDSARTFSLLSSRACCLEYHITLLRV 680 (952)
Q Consensus 640 ~~~~l~~~~l~lAa~~~~~~DiSlLs~d~~~LEyyI~LL~v 680 (952)
.+ .||.=-+ ..+..+ .+|-.+ ||+|-|.|+++
T Consensus 194 vi--IPp~lgY---g~~g~~---~Ippns-tL~fdVEL~~v 225 (226)
T KOG0552|consen 194 VI--IPPELGY---GKKGVP---EIPPNS-TLVFDVELLSV 225 (226)
T ss_pred EE--eCccccc---cccCcC---cCCCCC-cEEEEEEEEec
Confidence 87 5553111 111111 223333 47887777764
No 415
>TIGR02279 PaaC-3OHAcCoADH 3-hydroxyacyl-CoA dehydrogenase PaaC. This 3-hydroxyacyl-CoA dehydrogenase is involved in the degradation of phenylacetic acid, presumably in steps following the opening of the phenyl ring. The sequences included in this model are all found in aparrent operons with other related genes such as paaA, paaB, paaD, paaE, paaF and paaN. Some genomes contain these other genes without an apparent paaC in the same operon - possibly in these cases a different dehydrogenase involved in fatty acid degradation may fill in the needed activity. This enzyme has domains which are members of the pfam02737 and pfam00725 families.
Probab=22.53 E-value=1.8e+02 Score=35.32 Aligned_cols=107 Identities=14% Similarity=0.154 Sum_probs=58.5
Q ss_pred CCCEEEEEcCccc--hHHHHHhcCCCCCceEEEEeCChHHHHHHHHHHhhhhhcccccCC--C---CCCCccEEEEEcCc
Q 002218 713 CATTLVDFGCGSG--SLLDSLLDYPTALEKIVGVDISQKSLSRAAKIIHSKLSKKLDAAV--P---CTDVKSAVLFDGSI 785 (952)
Q Consensus 713 k~krVLDIGCGeG--~ll~~LAr~g~~~~qVVGVDISeemLe~ArkrLsa~la~~~~~l~--P---r~~~~nVtf~qGDa 785 (952)
+.++|-=||.|+- ..+..+++.| ..|+..|.+++.++.+.+++...++....... + .....+++.. .|.
T Consensus 4 ~~~kV~VIGaG~MG~gIA~~la~aG---~~V~l~d~~~e~l~~~~~~i~~~l~~~~~~G~~~~~~~~~~~~~i~~~-~~~ 79 (503)
T TIGR02279 4 NVVTVAVIGAGAMGAGIAQVAASAG---HQVLLYDIRAEALARAIAGIEARLNSLVTKGKLTAEECERTLKRLIPV-TDL 79 (503)
T ss_pred CccEEEEECcCHHHHHHHHHHHhCC---CeEEEEeCCHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHhccEEe-CCH
Confidence 3467888999853 3445566777 89999999999999887665544332211100 0 0001123332 233
Q ss_pred cccCCCCCCccEEEEccccccCChhHHHHHHHHHHHccCCCEEEE
Q 002218 786 TVFDSRLHGFDIGTCLEVIEHMEEDEASQFGNIVLSSFRPRILIV 830 (952)
Q Consensus 786 ~dLpf~d~sFDVVVcieVIEHL~dD~l~~L~eeI~RvLKPG~LII 830 (952)
.+ ....|+|+.. +.|-+. ..+.+...+..+++|+.++.
T Consensus 80 ~~----l~~aDlVIEa-v~E~~~--vK~~vf~~l~~~~~~~~Ila 117 (503)
T TIGR02279 80 HA----LADAGLVIEA-IVENLE--VKKALFAQLEELCPADTIIA 117 (503)
T ss_pred HH----hCCCCEEEEc-CcCcHH--HHHHHHHHHHhhCCCCeEEE
Confidence 22 2356776543 333332 22333445778888885544
No 416
>PRK08507 prephenate dehydrogenase; Validated
Probab=22.48 E-value=3.4e+02 Score=29.61 Aligned_cols=39 Identities=28% Similarity=0.310 Sum_probs=28.0
Q ss_pred EEEEEcCcc--chHHHHHhcCCCCCceEEEEeCChHHHHHHH
Q 002218 716 TLVDFGCGS--GSLLDSLLDYPTALEKIVGVDISQKSLSRAA 755 (952)
Q Consensus 716 rVLDIGCGe--G~ll~~LAr~g~~~~qVVGVDISeemLe~Ar 755 (952)
+|.=||+|. |.++..|.+.+ ...+|+++|.+++.++.+.
T Consensus 2 ~I~iIG~G~mG~sla~~l~~~g-~~~~v~~~d~~~~~~~~~~ 42 (275)
T PRK08507 2 KIGIIGLGLMGGSLGLALKEKG-LISKVYGYDHNELHLKKAL 42 (275)
T ss_pred EEEEEccCHHHHHHHHHHHhcC-CCCEEEEEcCCHHHHHHHH
Confidence 566788885 45666776665 2347999999998877764
No 417
>TIGR02440 FadJ fatty oxidation complex, alpha subunit FadJ. Members represent alpha subunit of multifunctional enzyme complex of the fatty acid degradation cycle. Plays a minor role in aerobic beta-oxidation of fatty acids. FadJI complex is necessary for anaerobic growth on short-chain acids with nitrate as an electron acceptor. Activities include: enoyl-CoA hydratase (EC 4.2.1.17),3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35), 3-hydroxybutyryl-CoA epimerase (EC 5.1.2.3). A representative is E. coli FadJ (aka YfcX). This model excludes the FadB of TIGR02437 equivalog.
Probab=22.46 E-value=5.4e+02 Score=32.57 Aligned_cols=162 Identities=14% Similarity=0.071 Sum_probs=83.9
Q ss_pred CEEEEEcCccchHH--HHHh-cCCCCCceEEEEeCChHHHHHHHHHHhhhhhccccc--CCCC---CCCccEEEEEcCcc
Q 002218 715 TTLVDFGCGSGSLL--DSLL-DYPTALEKIVGVDISQKSLSRAAKIIHSKLSKKLDA--AVPC---TDVKSAVLFDGSIT 786 (952)
Q Consensus 715 krVLDIGCGeG~ll--~~LA-r~g~~~~qVVGVDISeemLe~ArkrLsa~la~~~~~--l~Pr---~~~~nVtf~qGDa~ 786 (952)
++|.=||.|.-.-. ..++ ..| .+|+-+|++++.++.+.+++...+...... +.+. ....++++. .|..
T Consensus 305 ~~v~ViGaG~mG~~iA~~~a~~~G---~~V~l~d~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~~-~~~~ 380 (699)
T TIGR02440 305 KKVGILGGGLMGGGIASVTATKAG---IPVRIKDINPQGINNALKYAWKLLDKGVKRRHMTPAERDNQMALITGT-TDYR 380 (699)
T ss_pred cEEEEECCcHHHHHHHHHHHHHcC---CeEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHcCeEEe-CChH
Confidence 57999999864333 3344 356 899999999999999877765443321000 0000 001234433 2322
Q ss_pred ccCCCCCCccEEEEccccccCChhHHHHHHHHHHHccCCCEEEEE-ecCCchhHHHHhhccCccCCCCcchhhhcccccc
Q 002218 787 VFDSRLHGFDIGTCLEVIEHMEEDEASQFGNIVLSSFRPRILIVS-TPNYEYNAILQKSSSTIQEDDPDEKTQLQSCKFR 865 (952)
Q Consensus 787 dLpf~d~sFDVVVcieVIEHL~dD~l~~L~eeI~RvLKPG~LIIS-TPN~efN~lf~~L~~~ta~eYPde~~g~~~~~fR 865 (952)
.....|+|+=. +.|.+. ..+.+..++-++++|+.++.+ |-...-..+...+ ..|..-. ...|-
T Consensus 381 ----~~~~adlViEa-v~E~l~--~K~~v~~~l~~~~~~~~ilasnTS~l~i~~la~~~------~~p~r~~---g~Hff 444 (699)
T TIGR02440 381 ----GFKDVDIVIEA-VFEDLA--LKHQMVKDIEQECAAHTIFASNTSSLPIGQIAAAA------SRPENVI---GLHYF 444 (699)
T ss_pred ----HhccCCEEEEe-ccccHH--HHHHHHHHHHhhCCCCcEEEeCCCCCCHHHHHHhc------CCcccEE---EEecC
Confidence 23466776543 445543 233444569999999844443 3333333333322 1111001 11122
Q ss_pred CCCCc--------cccCHHHHHHHHHHHHHHcCcEEEEE
Q 002218 866 NHDHK--------FEWTRDQFNCWATELAARHNYSVEFS 896 (952)
Q Consensus 866 h~DHk--------FEWTReEFqsWae~La~q~GYsVefs 896 (952)
++-|. -..|..+...++..++.+.|......
T Consensus 445 nP~~~~~lVEvv~g~~T~~~~~~~~~~~~~~~gk~pv~v 483 (699)
T TIGR02440 445 SPVEKMPLVEVIPHAGTSEQTIATTVALAKKQGKTPIVV 483 (699)
T ss_pred CccccCceEEEeCCCCCCHHHHHHHHHHHHHcCCeEEEE
Confidence 22221 23576777777778888877665543
No 418
>PRK08268 3-hydroxy-acyl-CoA dehydrogenase; Validated
Probab=22.42 E-value=1.9e+02 Score=35.12 Aligned_cols=106 Identities=12% Similarity=0.165 Sum_probs=59.6
Q ss_pred CCCEEEEEcCcc-c-hHHHHHhcCCCCCceEEEEeCChHHHHHHHHHHhhhhhcccccCC--C---CCCCccEEEEEcCc
Q 002218 713 CATTLVDFGCGS-G-SLLDSLLDYPTALEKIVGVDISQKSLSRAAKIIHSKLSKKLDAAV--P---CTDVKSAVLFDGSI 785 (952)
Q Consensus 713 k~krVLDIGCGe-G-~ll~~LAr~g~~~~qVVGVDISeemLe~ArkrLsa~la~~~~~l~--P---r~~~~nVtf~qGDa 785 (952)
+-++|-=||.|. | ..+..++..| ..|+..|.+++.++.+.+++...++....... + .....+++.. .+.
T Consensus 6 ~i~~V~VIGaG~MG~gIA~~la~aG---~~V~l~D~~~e~l~~~~~~i~~~l~~~~~~G~~~~~~~~~~~~~i~~~-~~~ 81 (507)
T PRK08268 6 SIATVAVIGAGAMGAGIAQVAAQAG---HTVLLYDARAGAAAAARDGIAARLAKLVEKGKLTAEQADAALARLRPV-EAL 81 (507)
T ss_pred CCCEEEEECCCHHHHHHHHHHHhCC---CeEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhCeEEe-CCH
Confidence 346788899984 2 3556677777 89999999999999987766544432211100 0 0001123332 233
Q ss_pred cccCCCCCCccEEEEccccccCChhHHHHHHHHHHHccCCCEEE
Q 002218 786 TVFDSRLHGFDIGTCLEVIEHMEEDEASQFGNIVLSSFRPRILI 829 (952)
Q Consensus 786 ~dLpf~d~sFDVVVcieVIEHL~dD~l~~L~eeI~RvLKPG~LI 829 (952)
.+ ....|+|+-. +.|.+. ..+.+..++.++++|+.++
T Consensus 82 ~~----~~~aDlViEa-v~E~~~--vK~~vf~~l~~~~~~~ail 118 (507)
T PRK08268 82 AD----LADCDLVVEA-IVERLD--VKQALFAQLEAIVSPDCIL 118 (507)
T ss_pred HH----hCCCCEEEEc-CcccHH--HHHHHHHHHHhhCCCCcEE
Confidence 22 2356777653 334433 2233334577888888444
No 419
>PRK06130 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=21.91 E-value=4.3e+02 Score=29.28 Aligned_cols=41 Identities=22% Similarity=0.347 Sum_probs=31.4
Q ss_pred CEEEEEcCcc--chHHHHHhcCCCCCceEEEEeCChHHHHHHHHHH
Q 002218 715 TTLVDFGCGS--GSLLDSLLDYPTALEKIVGVDISQKSLSRAAKII 758 (952)
Q Consensus 715 krVLDIGCGe--G~ll~~LAr~g~~~~qVVGVDISeemLe~ArkrL 758 (952)
++|.=||+|. +.++..|++.+ .+|+++|.+++.++.+++.+
T Consensus 5 ~~I~vIGaG~mG~~iA~~l~~~g---~~V~~~d~~~~~~~~~~~~~ 47 (311)
T PRK06130 5 QNLAIIGAGTMGSGIAALFARKG---LQVVLIDVMEGALERARGVI 47 (311)
T ss_pred cEEEEECCCHHHHHHHHHHHhCC---CeEEEEECCHHHHHHHHHHH
Confidence 5788899994 34556666766 68999999999988887643
No 420
>PRK06522 2-dehydropantoate 2-reductase; Reviewed
Probab=21.39 E-value=4.1e+02 Score=28.85 Aligned_cols=37 Identities=16% Similarity=0.179 Sum_probs=26.4
Q ss_pred EEEEEcCcc--chHHHHHhcCCCCCceEEEEeCChHHHHHHH
Q 002218 716 TLVDFGCGS--GSLLDSLLDYPTALEKIVGVDISQKSLSRAA 755 (952)
Q Consensus 716 rVLDIGCGe--G~ll~~LAr~g~~~~qVVGVDISeemLe~Ar 755 (952)
+|+=||+|. +.++..|++.+ .+|+.+|.+++.++..+
T Consensus 2 ~I~IiG~G~~G~~~a~~L~~~g---~~V~~~~r~~~~~~~~~ 40 (304)
T PRK06522 2 KIAILGAGAIGGLFGAALAQAG---HDVTLVARRGAHLDALN 40 (304)
T ss_pred EEEEECCCHHHHHHHHHHHhCC---CeEEEEECChHHHHHHH
Confidence 678899984 33556667766 78999998777665543
No 421
>PTZ00357 methyltransferase; Provisional
Probab=21.28 E-value=2.4e+02 Score=36.04 Aligned_cols=100 Identities=14% Similarity=0.161 Sum_probs=58.5
Q ss_pred EEEEEcCccchHHHHHhcC---CCCCceEEEEeCChHHHHHHHHHHhhhhhcccccCCCCCC------CccEEEEEcCcc
Q 002218 716 TLVDFGCGSGSLLDSLLDY---PTALEKIVGVDISQKSLSRAAKIIHSKLSKKLDAAVPCTD------VKSAVLFDGSIT 786 (952)
Q Consensus 716 rVLDIGCGeG~ll~~LAr~---g~~~~qVVGVDISeemLe~ArkrLsa~la~~~~~l~Pr~~------~~nVtf~qGDa~ 786 (952)
.|+-+|+|.|-+.....+. .+...+|++|+-++..+.....+.... +.+. -..|+++..|+.
T Consensus 703 VImVVGAGRGPLVdraLrAak~~gvkVrIyAVEKNPpAA~~tllr~~N~---------eeW~n~~~~~G~~VtII~sDMR 773 (1072)
T PTZ00357 703 HLVLLGCGRGPLIDECLHAVSALGVRLRIFAIEKNLPAAAFTRMRWAND---------PEWTQLAYTFGHTLEVIVADGR 773 (1072)
T ss_pred EEEEEcCCccHHHHHHHHHHHHcCCcEEEEEEecCcchHHHHHHHHhcc---------cccccccccCCCeEEEEeCccc
Confidence 5899999999998644322 113468999999966544443332110 0111 236999999999
Q ss_pred ccCCCC-----------CCccEEEEccccccCChhHH-HHHHHHHHHccCC
Q 002218 787 VFDSRL-----------HGFDIGTCLEVIEHMEEDEA-SQFGNIVLSSFRP 825 (952)
Q Consensus 787 dLpf~d-----------~sFDVVVcieVIEHL~dD~l-~~L~eeI~RvLKP 825 (952)
++.... +.+|+||+ |.|--+.+.++ ..-++-+.+.||+
T Consensus 774 ~W~~pe~~~s~~~P~~~gKaDIVVS-ELLGSFGDNELSPECLDGaQrfLKd 823 (1072)
T PTZ00357 774 TIATAAENGSLTLPADFGLCDLIVS-ELLGSLGDNELSPECLEAFHAQLED 823 (1072)
T ss_pred ccccccccccccccccccccceehH-hhhcccccccCCHHHHHHHHHhhhh
Confidence 875321 36999987 44444443332 1111235556654
No 422
>PRK08703 short chain dehydrogenase; Provisional
Probab=20.92 E-value=4.1e+02 Score=27.58 Aligned_cols=43 Identities=19% Similarity=0.218 Sum_probs=29.6
Q ss_pred CCCEEEEEcCccch---HHHHHhcCCCCCceEEEEeCChHHHHHHHHHH
Q 002218 713 CATTLVDFGCGSGS---LLDSLLDYPTALEKIVGVDISQKSLSRAAKII 758 (952)
Q Consensus 713 k~krVLDIGCGeG~---ll~~LAr~g~~~~qVVGVDISeemLe~ArkrL 758 (952)
++++||-.|++.|. ++..|++.+ .+|++++-+++.++...+.+
T Consensus 5 ~~k~vlItG~sggiG~~la~~l~~~g---~~V~~~~r~~~~~~~~~~~l 50 (239)
T PRK08703 5 SDKTILVTGASQGLGEQVAKAYAAAG---ATVILVARHQKKLEKVYDAI 50 (239)
T ss_pred CCCEEEEECCCCcHHHHHHHHHHHcC---CEEEEEeCChHHHHHHHHHH
Confidence 56799999975433 234556666 78999999987666554443
No 423
>KOG2777 consensus tRNA-specific adenosine deaminase 1 [RNA processing and modification]
Probab=20.66 E-value=1.9e+02 Score=35.53 Aligned_cols=76 Identities=24% Similarity=0.238 Sum_probs=45.9
Q ss_pred CCCCCceEEEeeecCCceeeeccccccchHHHHHHHHHHHHcCCCCC---CC-----CCChHHHHHHHHHHHhhhhcccc
Q 002218 51 PQKGPCLYRCSLQLPEFSVVSETFKKKKDAEQSAAEKALEKLGIDPS---PN-----VPSAEEAWDKLIASVKHLFSNEF 122 (952)
Q Consensus 51 ~q~~~~~~~c~l~lp~~~v~~~~~~~kkdaeq~aa~~al~klg~~~~---~~-----~~~~~e~~~~l~~~~~~~f~~e~ 122 (952)
||.+| -|.|...+-+- +.-+.=+.||.|.|.||..||+.|.-.-. +. .+++..--|++...+.--| +|.
T Consensus 113 ~~~~~-~F~~~~~vdg~-~~~~~~~sKk~ak~~aa~~al~~l~~~~~~~~~~~~~~~~e~~~~~~~~Ia~lv~~kF-~~L 189 (542)
T KOG2777|consen 113 PQHAP-KFVMSVVVDGR-WFEGGGRSKKEAKQEAAMAALQVLFKIDENPERPSEALTLENPSTLGDEIAELVLEKF-DEL 189 (542)
T ss_pred CCCCc-eEEEEEEECCE-EccCCCcchHHHHHHHHHHHHHHHHhccCCcccccccccccCCChHHHHHHHHHHHHH-HHH
Confidence 56564 78888777653 22333688999999999999999765322 21 1233333344444444445 555
Q ss_pred cccCCCc
Q 002218 123 LSSQSPL 129 (952)
Q Consensus 123 ~~~~~pl 129 (952)
.....|-
T Consensus 190 ~k~~kp~ 196 (542)
T KOG2777|consen 190 TKNGKPI 196 (542)
T ss_pred HhcCCCc
Confidence 5555553
No 424
>PRK05854 short chain dehydrogenase; Provisional
Probab=20.54 E-value=4.4e+02 Score=29.17 Aligned_cols=79 Identities=11% Similarity=-0.014 Sum_probs=51.9
Q ss_pred CCCCEEEEEcCccch---HHHHHhcCCCCCceEEEEeCChHHHHHHHHHHhhhhhcccccCCCCCCCccEEEEEcCcccc
Q 002218 712 SCATTLVDFGCGSGS---LLDSLLDYPTALEKIVGVDISQKSLSRAAKIIHSKLSKKLDAAVPCTDVKSAVLFDGSITVF 788 (952)
Q Consensus 712 ~k~krVLDIGCGeG~---ll~~LAr~g~~~~qVVGVDISeemLe~ArkrLsa~la~~~~~l~Pr~~~~nVtf~qGDa~dL 788 (952)
..++++|=.|++.|. .+..|++.| .+|+.++-+.+..+.+.+.+... ....++.++..|+.+.
T Consensus 12 l~gk~~lITGas~GIG~~~a~~La~~G---~~Vil~~R~~~~~~~~~~~l~~~-----------~~~~~v~~~~~Dl~d~ 77 (313)
T PRK05854 12 LSGKRAVVTGASDGLGLGLARRLAAAG---AEVILPVRNRAKGEAAVAAIRTA-----------VPDAKLSLRALDLSSL 77 (313)
T ss_pred cCCCEEEEeCCCChHHHHHHHHHHHCC---CEEEEEeCCHHHHHHHHHHHHHh-----------CCCCceEEEEecCCCH
Confidence 356889989987654 335666777 79999998887776665554321 1112578888898774
Q ss_pred CC----------CCCCccEEEEcccc
Q 002218 789 DS----------RLHGFDIGTCLEVI 804 (952)
Q Consensus 789 pf----------~d~sFDVVVcieVI 804 (952)
.. .....|+++..-.+
T Consensus 78 ~sv~~~~~~~~~~~~~iD~li~nAG~ 103 (313)
T PRK05854 78 ASVAALGEQLRAEGRPIHLLINNAGV 103 (313)
T ss_pred HHHHHHHHHHHHhCCCccEEEECCcc
Confidence 31 23468998876543
Done!