Query 002218
Match_columns 952
No_of_seqs 408 out of 3333
Neff 4.4
Searched_HMMs 29240
Date Mon Mar 25 17:25:19 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/002218.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/002218hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3htx_A HEN1; HEN1, small RNA m 100.0 1E-279 4E-284 2429.3 62.3 895 3-947 9-943 (950)
2 3jwg_A HEN1, methyltransferase 100.0 5.4E-28 1.8E-32 241.5 21.9 202 694-919 10-211 (219)
3 3jwh_A HEN1; methyltransferase 100.0 3.3E-27 1.1E-31 236.0 22.5 202 694-919 9-211 (217)
4 2p7i_A Hypothetical protein; p 99.7 2.7E-16 9.4E-21 157.1 17.9 169 700-900 28-201 (250)
5 1vl5_A Unknown conserved prote 99.7 2.6E-16 8.9E-21 161.3 15.7 160 701-894 25-185 (260)
6 3ujc_A Phosphoethanolamine N-m 99.7 3.2E-16 1.1E-20 159.1 13.0 169 691-899 33-207 (266)
7 3hnr_A Probable methyltransfer 99.7 1.1E-15 3.8E-20 151.9 16.3 165 703-899 35-201 (220)
8 3h2b_A SAM-dependent methyltra 99.7 6.6E-16 2.3E-20 152.1 13.9 148 704-898 33-181 (203)
9 3l8d_A Methyltransferase; stru 99.6 2.7E-15 9.3E-20 150.9 17.7 156 703-900 45-202 (242)
10 3dtn_A Putative methyltransfer 99.6 2.8E-15 9.7E-20 150.7 17.6 174 696-894 26-209 (234)
11 1xxl_A YCGJ protein; structura 99.6 1.6E-15 5.3E-20 154.6 15.7 157 704-894 12-169 (239)
12 4htf_A S-adenosylmethionine-de 99.6 3.8E-15 1.3E-19 154.9 18.4 163 713-899 68-233 (285)
13 3ou2_A SAM-dependent methyltra 99.6 2.6E-15 9E-20 148.1 16.0 164 703-898 35-204 (218)
14 3dli_A Methyltransferase; PSI- 99.6 1.5E-15 5.1E-20 154.2 14.5 136 713-894 41-179 (240)
15 3e23_A Uncharacterized protein 99.6 3.5E-15 1.2E-19 148.1 16.2 158 713-919 43-202 (211)
16 4gek_A TRNA (CMO5U34)-methyltr 99.6 3.3E-15 1.1E-19 157.2 16.7 127 696-835 51-181 (261)
17 1y8c_A S-adenosylmethionine-de 99.6 5.7E-15 1.9E-19 147.9 17.6 124 696-836 18-146 (246)
18 1nkv_A Hypothetical protein YJ 99.6 1.4E-15 4.9E-20 154.5 13.1 165 693-893 16-181 (256)
19 1pjz_A Thiopurine S-methyltran 99.6 1.5E-15 5.2E-20 152.3 13.0 122 709-834 18-142 (203)
20 1xtp_A LMAJ004091AAA; SGPP, st 99.6 2.8E-15 9.5E-20 151.9 14.9 148 706-895 86-234 (254)
21 2ex4_A Adrenal gland protein A 99.6 1.8E-14 6.2E-19 146.3 18.4 142 713-895 79-221 (241)
22 3dh0_A SAM dependent methyltra 99.6 8.3E-15 2.8E-19 145.6 15.3 154 703-899 27-182 (219)
23 3dlc_A Putative S-adenosyl-L-m 99.6 5.6E-15 1.9E-19 145.1 12.9 128 693-836 24-152 (219)
24 3bus_A REBM, methyltransferase 99.6 1.7E-14 5.7E-19 148.3 16.9 166 701-900 49-218 (273)
25 3g5l_A Putative S-adenosylmeth 99.6 1.2E-14 4.1E-19 148.1 15.6 114 703-835 34-148 (253)
26 2xvm_A Tellurite resistance pr 99.6 1.2E-14 4.2E-19 141.4 14.6 114 704-833 23-137 (199)
27 2o57_A Putative sarcosine dime 99.6 1.1E-14 3.7E-19 152.1 14.7 121 700-835 65-190 (297)
28 3lcc_A Putative methyl chlorid 99.6 6E-14 2.1E-18 141.7 19.6 158 713-917 66-225 (235)
29 1kpg_A CFA synthase;, cyclopro 99.6 3.2E-14 1.1E-18 147.9 17.5 119 702-836 53-172 (287)
30 2gb4_A Thiopurine S-methyltran 99.6 1.6E-14 5.4E-19 151.3 15.2 131 699-834 54-193 (252)
31 3kkz_A Uncharacterized protein 99.6 8.1E-15 2.8E-19 151.1 12.6 125 694-834 26-152 (267)
32 3ofk_A Nodulation protein S; N 99.6 1.8E-14 6.1E-19 143.2 14.2 122 696-835 33-157 (216)
33 3cc8_A Putative methyltransfer 99.6 3.5E-14 1.2E-18 140.5 16.1 160 704-900 24-187 (230)
34 3bkw_A MLL3908 protein, S-aden 99.6 2.8E-14 9.5E-19 143.4 15.3 115 703-836 33-148 (243)
35 3f4k_A Putative methyltransfer 99.6 8.9E-15 3E-19 148.8 11.9 123 696-834 28-152 (257)
36 3vc1_A Geranyl diphosphate 2-C 99.6 1.2E-14 4E-19 154.2 12.8 123 696-835 99-224 (312)
37 2yqz_A Hypothetical protein TT 99.6 3.5E-14 1.2E-18 144.2 15.6 149 711-895 37-192 (263)
38 3g2m_A PCZA361.24; SAM-depende 99.6 2.1E-14 7.3E-19 150.8 14.2 118 703-837 73-195 (299)
39 2kw5_A SLR1183 protein; struct 99.6 8.6E-14 2.9E-18 136.9 17.6 157 716-917 32-193 (202)
40 3pfg_A N-methyltransferase; N, 99.6 2.9E-14 9.8E-19 146.4 14.3 114 698-832 33-151 (263)
41 3cgg_A SAM-dependent methyltra 99.5 1.2E-13 4.2E-18 132.9 17.6 103 712-834 45-149 (195)
42 2gs9_A Hypothetical protein TT 99.5 3.7E-14 1.3E-18 140.4 14.2 132 713-883 36-170 (211)
43 3hem_A Cyclopropane-fatty-acyl 99.5 1.2E-13 4E-18 145.4 18.8 120 701-836 60-187 (302)
44 3thr_A Glycine N-methyltransfe 99.5 1.2E-14 4.1E-19 151.2 11.1 128 699-837 43-180 (293)
45 3g07_A 7SK snRNA methylphospha 99.5 5.9E-15 2E-19 156.1 8.3 185 713-920 46-289 (292)
46 2fk8_A Methoxy mycolic acid sy 99.5 1.1E-13 3.8E-18 146.3 17.2 120 701-837 78-199 (318)
47 3bxo_A N,N-dimethyltransferase 99.5 3.4E-14 1.2E-18 142.3 12.4 116 699-835 24-144 (239)
48 3ccf_A Cyclopropane-fatty-acyl 99.5 3.8E-14 1.3E-18 147.3 12.8 157 704-895 48-206 (279)
49 4hg2_A Methyltransferase type 99.5 1.5E-14 5.2E-19 152.1 10.0 114 695-834 23-137 (257)
50 3sm3_A SAM-dependent methyltra 99.5 1.1E-13 3.7E-18 137.8 15.4 167 713-897 30-205 (235)
51 3i9f_A Putative type 11 methyl 99.5 3.1E-14 1.1E-18 136.4 10.8 135 704-894 8-143 (170)
52 1ri5_A MRNA capping enzyme; me 99.5 9.6E-14 3.3E-18 143.5 15.2 112 712-836 63-178 (298)
53 3d2l_A SAM-dependent methyltra 99.5 3.6E-13 1.2E-17 135.2 18.6 118 698-835 20-140 (243)
54 2p35_A Trans-aconitate 2-methy 99.5 5.3E-14 1.8E-18 142.9 12.4 156 704-895 24-186 (259)
55 3bkx_A SAM-dependent methyltra 99.5 2.6E-13 9E-18 139.6 17.6 168 702-895 32-215 (275)
56 3m70_A Tellurite resistance pr 99.5 1.4E-13 4.8E-18 143.2 15.5 112 705-833 112-224 (286)
57 3e8s_A Putative SAM dependent 99.5 1E-13 3.4E-18 136.9 13.5 157 704-897 43-207 (227)
58 2aot_A HMT, histamine N-methyl 99.5 2.4E-13 8.2E-18 142.9 16.1 149 713-895 52-217 (292)
59 2p8j_A S-adenosylmethionine-de 99.5 1.9E-13 6.7E-18 134.5 12.7 108 712-835 22-131 (209)
60 3mgg_A Methyltransferase; NYSG 99.5 1.6E-13 5.3E-18 141.6 12.5 109 712-835 36-145 (276)
61 4e2x_A TCAB9; kijanose, tetron 99.5 4.7E-14 1.6E-18 155.3 9.0 151 705-896 99-250 (416)
62 1vlm_A SAM-dependent methyltra 99.5 7.9E-13 2.7E-17 132.7 16.8 133 714-894 48-183 (219)
63 3ocj_A Putative exported prote 99.5 7.8E-13 2.7E-17 139.8 17.0 111 712-834 117-229 (305)
64 2i62_A Nicotinamide N-methyltr 99.4 1E-12 3.4E-17 133.7 15.7 158 712-897 55-237 (265)
65 3ggd_A SAM-dependent methyltra 99.4 2.9E-13 9.8E-18 137.3 11.6 160 712-900 55-220 (245)
66 1ve3_A Hypothetical protein PH 99.4 9.4E-13 3.2E-17 130.9 14.4 107 713-835 38-145 (227)
67 1wzn_A SAM-dependent methyltra 99.4 1.1E-12 3.9E-17 133.1 15.1 118 701-835 26-148 (252)
68 4azs_A Methyltransferase WBDD; 99.4 1.6E-13 5.4E-18 158.8 9.9 106 713-833 66-175 (569)
69 3gu3_A Methyltransferase; alph 99.4 1.1E-12 3.7E-17 137.4 15.2 118 701-834 9-128 (284)
70 3g5t_A Trans-aconitate 3-methy 99.4 6.1E-13 2.1E-17 139.8 13.0 118 699-830 23-147 (299)
71 3ege_A Putative methyltransfer 99.4 7E-13 2.4E-17 136.9 12.8 112 700-835 21-133 (261)
72 2pxx_A Uncharacterized protein 99.4 6.6E-13 2.2E-17 130.4 11.6 108 712-835 41-162 (215)
73 4fsd_A Arsenic methyltransfera 99.4 5.5E-13 1.9E-17 146.5 11.9 119 711-835 81-206 (383)
74 1p91_A Ribosomal RNA large sub 99.4 1.1E-12 3.6E-17 135.2 12.6 152 650-837 18-183 (269)
75 2avn_A Ubiquinone/menaquinone 99.4 1E-12 3.4E-17 135.5 12.3 101 713-835 54-155 (260)
76 2vdw_A Vaccinia virus capping 99.4 5.5E-13 1.9E-17 143.1 10.7 117 713-837 48-174 (302)
77 1dus_A MJ0882; hypothetical pr 99.4 2E-12 6.9E-17 124.3 13.5 128 693-837 32-162 (194)
78 3lbf_A Protein-L-isoaspartate 99.4 1.3E-12 4.5E-17 129.4 12.1 110 702-834 66-176 (210)
79 2r3s_A Uncharacterized protein 99.4 2.4E-12 8.4E-17 136.5 15.0 159 704-894 154-318 (335)
80 3iv6_A Putative Zn-dependent a 99.4 2.2E-12 7.4E-17 137.0 14.5 122 700-838 32-154 (261)
81 2a14_A Indolethylamine N-methy 99.4 7.4E-13 2.5E-17 137.6 10.5 160 712-899 54-239 (263)
82 3p9n_A Possible methyltransfer 99.4 2.4E-12 8.3E-17 126.3 13.3 118 703-835 31-156 (189)
83 2g72_A Phenylethanolamine N-me 99.4 2.1E-12 7.2E-17 135.0 13.1 126 704-831 60-214 (289)
84 3bgv_A MRNA CAP guanine-N7 met 99.4 2.1E-12 7.2E-17 136.8 12.8 117 713-836 34-159 (313)
85 3mcz_A O-methyltransferase; ad 99.4 7.6E-12 2.6E-16 134.4 16.6 161 705-896 170-336 (352)
86 3hm2_A Precorrin-6Y C5,15-meth 99.4 6.9E-12 2.4E-16 120.1 14.6 114 702-835 14-130 (178)
87 3dp7_A SAM-dependent methyltra 99.4 1.1E-11 3.9E-16 135.0 18.0 108 712-833 178-288 (363)
88 3mq2_A 16S rRNA methyltransfer 99.4 2.7E-12 9.3E-17 128.2 12.1 158 707-899 21-184 (218)
89 3mti_A RRNA methylase; SAM-dep 99.3 3.8E-12 1.3E-16 123.7 12.1 104 713-832 22-135 (185)
90 3e05_A Precorrin-6Y C5,15-meth 99.3 1.2E-11 4.2E-16 122.5 14.2 114 703-834 30-144 (204)
91 1qzz_A RDMB, aclacinomycin-10- 99.3 1E-11 3.4E-16 134.3 14.7 115 704-833 173-288 (374)
92 2qe6_A Uncharacterized protein 99.3 1.4E-11 4.9E-16 130.1 15.2 110 712-836 76-200 (274)
93 1vbf_A 231AA long hypothetical 99.3 9.4E-12 3.2E-16 125.1 13.2 110 702-836 59-169 (231)
94 1zx0_A Guanidinoacetate N-meth 99.3 5.5E-12 1.9E-16 128.1 11.4 106 712-832 59-170 (236)
95 1x19_A CRTF-related protein; m 99.3 5E-11 1.7E-15 129.0 19.0 115 704-833 181-296 (359)
96 2yxe_A Protein-L-isoaspartate 99.3 8.6E-12 3E-16 124.0 12.1 115 702-836 66-181 (215)
97 3i53_A O-methyltransferase; CO 99.3 1.8E-11 6.2E-16 130.9 15.3 144 713-894 169-316 (332)
98 3njr_A Precorrin-6Y methylase; 99.3 2.2E-11 7.5E-16 122.6 14.8 110 703-834 45-156 (204)
99 1l3i_A Precorrin-6Y methyltran 99.3 8.6E-12 2.9E-16 119.7 11.1 120 696-834 16-136 (192)
100 3gwz_A MMCR; methyltransferase 99.3 5.5E-11 1.9E-15 129.9 18.3 114 705-833 194-308 (369)
101 1tw3_A COMT, carminomycin 4-O- 99.3 2E-11 7E-16 131.4 13.9 116 704-834 174-290 (360)
102 2yxd_A Probable cobalt-precorr 99.3 1.9E-11 6.7E-16 116.7 12.3 115 696-834 18-133 (183)
103 1yzh_A TRNA (guanine-N(7)-)-me 99.3 2.4E-11 8.4E-16 121.7 12.6 112 713-837 41-161 (214)
104 2fca_A TRNA (guanine-N(7)-)-me 99.3 1.7E-11 6E-16 123.9 11.5 112 713-837 38-158 (213)
105 2ip2_A Probable phenazine-spec 99.3 3.1E-11 1.1E-15 128.7 14.0 114 704-833 159-273 (334)
106 3evz_A Methyltransferase; NYSG 99.3 1E-10 3.4E-15 117.5 16.8 147 712-919 54-221 (230)
107 1dl5_A Protein-L-isoaspartate 99.3 1.2E-11 4E-16 132.6 10.5 116 699-834 61-177 (317)
108 3fzg_A 16S rRNA methylase; met 99.2 8.5E-12 2.9E-16 128.1 8.6 119 696-834 34-153 (200)
109 4dzr_A Protein-(glutamine-N5) 99.2 4.1E-12 1.4E-16 124.4 6.0 126 696-836 12-169 (215)
110 3dxy_A TRNA (guanine-N(7)-)-me 99.2 9.5E-12 3.3E-16 127.2 8.9 115 713-840 34-158 (218)
111 2ift_A Putative methylase HI07 99.2 1.5E-11 5.3E-16 123.0 10.0 117 703-836 42-167 (201)
112 3ntv_A MW1564 protein; rossman 99.2 4.6E-11 1.6E-15 121.9 13.4 119 695-830 53-174 (232)
113 3orh_A Guanidinoacetate N-meth 99.2 2E-11 6.7E-16 125.6 10.7 102 712-830 59-168 (236)
114 2esr_A Methyltransferase; stru 99.2 2.5E-11 8.4E-16 117.2 10.8 120 701-836 18-142 (177)
115 3ckk_A TRNA (guanine-N(7)-)-me 99.2 3.6E-11 1.2E-15 124.4 11.9 121 713-840 46-176 (235)
116 1ws6_A Methyltransferase; stru 99.2 1.6E-11 5.5E-16 116.6 7.8 116 701-836 27-151 (171)
117 1jg1_A PIMT;, protein-L-isoasp 99.2 4.5E-11 1.5E-15 121.6 11.5 113 702-837 80-194 (235)
118 3grz_A L11 mtase, ribosomal pr 99.2 3.3E-11 1.1E-15 119.3 10.0 102 712-834 59-161 (205)
119 3q7e_A Protein arginine N-meth 99.2 5.6E-11 1.9E-15 129.5 12.8 106 710-829 63-169 (349)
120 3eey_A Putative rRNA methylase 99.2 6.9E-11 2.3E-15 116.0 12.1 111 712-833 21-140 (197)
121 2y1w_A Histone-arginine methyl 99.2 6.1E-11 2.1E-15 129.0 12.6 115 703-832 40-155 (348)
122 3tr6_A O-methyltransferase; ce 99.2 1.2E-10 4E-15 116.7 13.2 119 699-833 50-175 (225)
123 2fhp_A Methylase, putative; al 99.2 5.1E-11 1.7E-15 115.0 10.1 122 699-836 29-158 (187)
124 2pbf_A Protein-L-isoaspartate 99.2 6.4E-11 2.2E-15 118.9 11.1 116 704-834 69-195 (227)
125 3fpf_A Mtnas, putative unchara 99.2 1.2E-10 4E-15 126.3 13.8 106 707-833 116-223 (298)
126 3dmg_A Probable ribosomal RNA 99.2 1.8E-10 6.2E-15 127.8 15.7 116 712-843 232-352 (381)
127 3duw_A OMT, O-methyltransferas 99.2 2.6E-10 8.8E-15 114.2 15.2 119 699-833 44-168 (223)
128 1i1n_A Protein-L-isoaspartate 99.2 1E-10 3.5E-15 117.4 12.0 117 704-835 66-185 (226)
129 2hnk_A SAM-dependent O-methylt 99.2 1.2E-10 4E-15 118.8 12.6 161 698-900 45-223 (239)
130 2fyt_A Protein arginine N-meth 99.2 1.8E-10 6.3E-15 125.2 14.8 112 703-830 54-168 (340)
131 2fpo_A Methylase YHHF; structu 99.2 6.3E-11 2.2E-15 118.7 10.2 117 701-834 41-162 (202)
132 3dr5_A Putative O-methyltransf 99.2 1.1E-10 3.7E-15 119.6 12.0 121 694-830 34-161 (221)
133 3u81_A Catechol O-methyltransf 99.2 1.5E-10 5E-15 116.8 12.5 122 696-831 41-169 (221)
134 3lpm_A Putative methyltransfer 99.2 2.2E-10 7.6E-15 118.6 13.7 119 705-836 40-180 (259)
135 3tfw_A Putative O-methyltransf 99.2 1.1E-09 3.8E-14 113.1 18.9 117 701-833 51-171 (248)
136 3lst_A CALO1 methyltransferase 99.2 1.1E-10 3.8E-15 126.1 11.8 111 705-833 176-287 (348)
137 1xdz_A Methyltransferase GIDB; 99.2 8.8E-11 3E-15 120.0 10.4 99 713-830 70-172 (240)
138 3r0q_C Probable protein argini 99.1 1.4E-10 4.9E-15 127.7 12.7 112 704-830 54-167 (376)
139 2b3t_A Protein methyltransfera 99.1 2.7E-10 9.4E-15 118.9 14.0 125 696-835 93-241 (276)
140 1yb2_A Hypothetical protein TA 99.1 9E-11 3.1E-15 122.7 10.3 119 697-835 94-214 (275)
141 1nt2_A Fibrillarin-like PRE-rR 99.1 1.4E-10 4.7E-15 117.8 11.2 103 711-833 55-162 (210)
142 1jsx_A Glucose-inhibited divis 99.1 1.6E-10 5.6E-15 113.9 11.2 99 713-831 65-164 (207)
143 4dcm_A Ribosomal RNA large sub 99.1 1.9E-10 6.6E-15 127.2 13.1 131 702-843 211-346 (375)
144 3tma_A Methyltransferase; thum 99.1 1.3E-10 4.6E-15 125.9 11.6 131 694-836 184-321 (354)
145 1o9g_A RRNA methyltransferase; 99.1 1.2E-10 4.1E-15 119.5 10.5 133 701-835 39-216 (250)
146 2pwy_A TRNA (adenine-N(1)-)-me 99.1 1.3E-10 4.6E-15 118.1 10.8 121 696-835 79-201 (258)
147 2igt_A SAM dependent methyltra 99.1 4.5E-10 1.5E-14 122.4 15.5 141 704-895 143-300 (332)
148 1af7_A Chemotaxis receptor met 99.1 1.2E-10 4.1E-15 124.3 10.7 119 713-831 105-250 (274)
149 1fp1_D Isoliquiritigenin 2'-O- 99.1 2E-10 6.8E-15 125.3 12.6 105 705-832 200-306 (372)
150 3mb5_A SAM-dependent methyltra 99.1 1.3E-10 4.6E-15 118.6 10.6 121 696-836 76-198 (255)
151 1g6q_1 HnRNP arginine N-methyl 99.1 2.7E-10 9.2E-15 123.0 13.4 113 704-830 29-142 (328)
152 3uwp_A Histone-lysine N-methyl 99.1 1.6E-10 5.4E-15 130.5 11.9 128 694-831 154-287 (438)
153 2pjd_A Ribosomal RNA small sub 99.1 6E-11 2E-15 128.5 7.9 118 701-834 184-305 (343)
154 3reo_A (ISO)eugenol O-methyltr 99.1 4.4E-10 1.5E-14 123.0 14.7 99 712-833 202-301 (368)
155 1i9g_A Hypothetical protein RV 99.1 1.4E-10 4.7E-15 120.1 10.1 124 697-836 83-207 (280)
156 1ne2_A Hypothetical protein TA 99.1 3.9E-10 1.3E-14 111.4 12.7 97 711-831 49-146 (200)
157 3p2e_A 16S rRNA methylase; met 99.1 7.2E-11 2.5E-15 121.3 7.2 108 712-835 23-143 (225)
158 2ozv_A Hypothetical protein AT 99.1 2.4E-10 8E-15 119.3 11.2 127 705-840 28-178 (260)
159 1fp2_A Isoflavone O-methyltran 99.1 5.1E-10 1.7E-14 121.0 13.7 99 712-833 187-289 (352)
160 3p9c_A Caffeic acid O-methyltr 99.1 1.1E-09 3.8E-14 119.8 16.4 106 705-833 192-299 (364)
161 3gdh_A Trimethylguanosine synt 99.1 5.6E-11 1.9E-15 120.4 5.6 101 712-830 77-179 (241)
162 3r3h_A O-methyltransferase, SA 99.1 1.4E-10 4.8E-15 120.2 8.5 117 699-831 46-169 (242)
163 3m33_A Uncharacterized protein 99.1 5E-11 1.7E-15 120.6 5.0 91 712-830 47-139 (226)
164 3c3p_A Methyltransferase; NP_9 99.1 5E-10 1.7E-14 111.6 12.1 121 695-832 38-160 (210)
165 1fbn_A MJ fibrillarin homologu 99.1 3.5E-10 1.2E-14 114.9 10.8 101 710-831 71-177 (230)
166 3q87_B N6 adenine specific DNA 99.1 3.4E-10 1.1E-14 110.5 10.2 96 712-834 22-125 (170)
167 2gpy_A O-methyltransferase; st 99.1 3.6E-10 1.2E-14 114.4 10.6 120 697-833 38-161 (233)
168 2ipx_A RRNA 2'-O-methyltransfe 99.1 3.3E-10 1.1E-14 114.9 10.2 105 711-833 75-183 (233)
169 1r18_A Protein-L-isoaspartate( 99.1 3.2E-10 1.1E-14 114.5 10.0 116 704-834 73-196 (227)
170 2avd_A Catechol-O-methyltransf 99.1 1.1E-09 3.9E-14 109.8 13.8 115 701-831 57-178 (229)
171 2vdv_E TRNA (guanine-N(7)-)-me 99.1 3E-10 1E-14 116.7 9.7 118 713-840 49-181 (246)
172 3b3j_A Histone-arginine methyl 99.1 5.6E-10 1.9E-14 127.5 12.7 112 704-830 149-261 (480)
173 4a6d_A Hydroxyindole O-methylt 99.1 1.9E-09 6.4E-14 117.6 16.2 112 705-832 171-283 (353)
174 1ej0_A FTSJ; methyltransferase 99.1 3.7E-10 1.3E-14 106.1 9.2 103 711-836 20-140 (180)
175 3g89_A Ribosomal RNA small sub 99.1 3.1E-10 1.1E-14 118.3 9.4 101 712-831 79-183 (249)
176 1g8a_A Fibrillarin-like PRE-rR 99.0 6.3E-10 2.2E-14 111.9 11.0 104 711-832 71-178 (227)
177 2yvl_A TRMI protein, hypotheti 99.0 1.1E-09 3.8E-14 110.7 12.7 117 699-836 77-194 (248)
178 3giw_A Protein of unknown func 99.0 6.9E-10 2.4E-14 119.2 11.7 114 712-837 77-205 (277)
179 1ixk_A Methyltransferase; open 99.0 6.2E-10 2.1E-14 119.9 11.0 119 704-834 109-248 (315)
180 3bzb_A Uncharacterized protein 99.0 1.6E-09 5.4E-14 114.3 13.8 122 698-830 64-203 (281)
181 1wy7_A Hypothetical protein PH 99.0 3.8E-09 1.3E-13 104.4 15.6 102 710-831 46-148 (207)
182 3bwc_A Spermidine synthase; SA 99.0 1E-09 3.6E-14 117.6 11.8 113 712-833 94-211 (304)
183 1nv8_A HEMK protein; class I a 99.0 2.4E-09 8.2E-14 113.8 14.3 124 696-836 106-253 (284)
184 3cbg_A O-methyltransferase; cy 99.0 2.7E-09 9.3E-14 109.0 14.1 115 703-833 62-183 (232)
185 1zg3_A Isoflavanone 4'-O-methy 99.0 1.1E-09 3.7E-14 118.7 11.5 99 712-833 192-294 (358)
186 2nxc_A L11 mtase, ribosomal pr 99.0 8.1E-10 2.8E-14 114.9 9.9 100 712-833 119-219 (254)
187 2frn_A Hypothetical protein PH 99.0 1.1E-09 3.7E-14 115.6 10.9 121 691-834 106-227 (278)
188 2b25_A Hypothetical protein; s 99.0 1.5E-09 5.3E-14 116.5 12.1 126 698-836 90-223 (336)
189 1o54_A SAM-dependent O-methylt 99.0 1.5E-09 5.1E-14 113.2 11.2 119 697-834 96-215 (277)
190 1sui_A Caffeoyl-COA O-methyltr 99.0 1.2E-09 4.1E-14 113.5 10.2 117 699-831 65-189 (247)
191 3gnl_A Uncharacterized protein 99.0 2.9E-09 9.9E-14 112.4 13.2 119 700-836 10-128 (244)
192 3lec_A NADB-rossmann superfami 99.0 4.3E-09 1.5E-13 110.2 13.6 119 700-836 10-128 (230)
193 2ld4_A Anamorsin; methyltransf 99.0 8.1E-10 2.8E-14 106.9 7.5 89 711-833 10-102 (176)
194 1u2z_A Histone-lysine N-methyl 99.0 1.9E-09 6.7E-14 122.0 11.5 117 699-831 228-358 (433)
195 3tm4_A TRNA (guanine N2-)-meth 98.9 2E-09 6.9E-14 118.4 11.2 124 696-834 201-331 (373)
196 3opn_A Putative hemolysin; str 98.9 3.2E-09 1.1E-13 110.0 11.9 173 702-919 25-203 (232)
197 3id6_C Fibrillarin-like rRNA/T 98.9 3.1E-09 1.1E-13 111.1 11.8 120 696-833 56-182 (232)
198 4hc4_A Protein arginine N-meth 98.9 2E-09 6.7E-14 119.9 11.0 106 710-830 80-186 (376)
199 3frh_A 16S rRNA methylase; met 98.9 2.6E-09 8.8E-14 113.3 11.3 104 712-834 104-207 (253)
200 3kr9_A SAM-dependent methyltra 98.9 7.1E-09 2.4E-13 108.1 14.2 119 700-836 4-122 (225)
201 4df3_A Fibrillarin-like rRNA/T 98.9 1.4E-09 4.7E-14 114.1 8.7 106 710-833 74-183 (233)
202 2h00_A Methyltransferase 10 do 98.9 1.4E-09 4.8E-14 111.5 8.3 106 713-830 65-190 (254)
203 3hp7_A Hemolysin, putative; st 98.9 1.9E-09 6.6E-14 116.3 9.6 104 703-830 74-183 (291)
204 3lcv_B Sisomicin-gentamicin re 98.9 2.1E-09 7.3E-14 115.1 9.4 119 699-835 120-238 (281)
205 3ajd_A Putative methyltransfer 98.9 1.6E-09 5.4E-14 113.9 8.4 118 704-834 74-213 (274)
206 2zfu_A Nucleomethylin, cerebra 98.9 1.5E-09 5.3E-14 107.8 7.6 94 705-834 58-153 (215)
207 3adn_A Spermidine synthase; am 98.9 6.1E-09 2.1E-13 111.8 12.0 113 712-832 82-198 (294)
208 3c3y_A Pfomt, O-methyltransfer 98.9 3.6E-09 1.2E-13 108.8 9.6 115 701-831 58-180 (237)
209 3a27_A TYW2, uncharacterized p 98.9 3.5E-09 1.2E-13 111.5 9.6 102 712-833 118-220 (272)
210 3c0k_A UPF0064 protein YCCW; P 98.9 2.8E-08 9.5E-13 109.8 17.0 107 712-833 219-340 (396)
211 3sso_A Methyltransferase; macr 98.9 1.6E-09 5.5E-14 121.9 7.1 125 686-835 189-327 (419)
212 2plw_A Ribosomal RNA methyltra 98.9 8.2E-09 2.8E-13 101.3 11.2 100 712-834 21-156 (201)
213 2b78_A Hypothetical protein SM 98.9 1.5E-08 5.1E-13 112.2 14.5 108 712-833 211-332 (385)
214 2bm8_A Cephalosporin hydroxyla 98.9 2.1E-09 7.3E-14 110.9 7.2 106 705-832 73-187 (236)
215 2i7c_A Spermidine synthase; tr 98.9 8.3E-09 2.8E-13 109.5 11.4 114 712-834 77-194 (283)
216 2o07_A Spermidine synthase; st 98.8 9.5E-09 3.2E-13 110.6 11.6 112 712-833 94-210 (304)
217 1zq9_A Probable dimethyladenos 98.8 1.6E-08 5.6E-13 107.4 13.0 84 702-801 17-100 (285)
218 1xj5_A Spermidine synthase 1; 98.8 1.1E-08 3.9E-13 111.7 11.7 113 712-833 119-236 (334)
219 1iy9_A Spermidine synthase; ro 98.8 7.6E-09 2.6E-13 109.5 9.9 112 712-833 74-190 (275)
220 1uir_A Polyamine aminopropyltr 98.8 1.2E-08 4.1E-13 109.9 11.4 113 712-832 76-195 (314)
221 2yxl_A PH0851 protein, 450AA l 98.8 1.6E-08 5.4E-13 114.0 12.7 119 704-834 250-391 (450)
222 1uwv_A 23S rRNA (uracil-5-)-me 98.8 2.6E-08 8.8E-13 111.8 14.3 90 697-801 270-363 (433)
223 2h1r_A Dimethyladenosine trans 98.8 1.8E-08 6.1E-13 107.9 12.4 86 701-803 30-115 (299)
224 2as0_A Hypothetical protein PH 98.8 2.7E-08 9.3E-13 109.8 13.9 107 713-834 217-337 (396)
225 2f8l_A Hypothetical protein LM 98.8 1.2E-08 4.1E-13 110.4 10.6 119 703-835 119-259 (344)
226 2pt6_A Spermidine synthase; tr 98.8 1.2E-08 4.1E-13 110.6 10.6 113 712-834 115-232 (321)
227 3gjy_A Spermidine synthase; AP 98.8 1.6E-08 5.4E-13 110.5 11.3 106 715-833 91-201 (317)
228 2b2c_A Spermidine synthase; be 98.8 1.1E-08 3.8E-13 110.8 9.8 111 712-832 107-222 (314)
229 1inl_A Spermidine synthase; be 98.8 2.6E-08 9E-13 106.5 12.2 112 712-833 89-206 (296)
230 2frx_A Hypothetical protein YE 98.8 1.4E-08 4.9E-13 116.0 10.8 119 704-834 106-248 (479)
231 1wxx_A TT1595, hypothetical pr 98.8 3.6E-08 1.2E-12 108.6 13.3 106 713-834 209-327 (382)
232 1mjf_A Spermidine synthase; sp 98.8 2E-08 6.9E-13 106.3 10.6 116 712-832 74-193 (281)
233 2qm3_A Predicted methyltransfe 98.7 8.1E-08 2.8E-12 105.5 13.8 106 712-834 171-280 (373)
234 3gru_A Dimethyladenosine trans 98.7 3.3E-08 1.1E-12 106.7 9.9 84 702-802 39-122 (295)
235 3m6w_A RRNA methylase; rRNA me 98.7 2E-08 6.7E-13 114.7 8.3 118 704-834 92-231 (464)
236 1sqg_A SUN protein, FMU protei 98.7 4.2E-08 1.4E-12 109.8 10.7 117 704-834 237-376 (429)
237 2wa2_A Non-structural protein 98.7 1.4E-08 4.8E-13 108.2 6.5 105 712-834 81-195 (276)
238 2nyu_A Putative ribosomal RNA 98.7 9.5E-08 3.3E-12 93.1 11.7 101 712-835 21-148 (196)
239 2oxt_A Nucleoside-2'-O-methylt 98.7 1.9E-08 6.4E-13 106.6 6.6 117 700-834 61-187 (265)
240 2yx1_A Hypothetical protein MJ 98.7 1.1E-07 3.9E-12 103.2 12.9 118 691-835 176-294 (336)
241 3k0b_A Predicted N6-adenine-sp 98.7 7.1E-08 2.4E-12 107.6 11.2 137 693-841 181-359 (393)
242 3ldg_A Putative uncharacterize 98.6 1.4E-07 4.7E-12 105.2 13.0 135 695-841 176-352 (384)
243 2jjq_A Uncharacterized RNA met 98.6 2.2E-07 7.5E-12 104.7 14.6 107 700-832 280-387 (425)
244 2ih2_A Modification methylase 98.6 4.3E-08 1.5E-12 107.4 8.7 121 690-835 19-167 (421)
245 1qam_A ERMC' methyltransferase 98.6 1.4E-07 4.6E-12 98.1 11.6 78 702-796 19-97 (244)
246 4dmg_A Putative uncharacterize 98.6 2.4E-07 8.1E-12 103.5 14.3 105 713-834 214-328 (393)
247 2cmg_A Spermidine synthase; tr 98.6 7.2E-08 2.5E-12 101.8 9.2 100 712-832 71-171 (262)
248 3ldu_A Putative methylase; str 98.6 1E-07 3.4E-12 106.0 10.7 135 695-841 177-353 (385)
249 3tqs_A Ribosomal RNA small sub 98.6 1.5E-07 5E-12 99.4 11.1 78 702-796 18-99 (255)
250 3m4x_A NOL1/NOP2/SUN family pr 98.6 4.7E-08 1.6E-12 111.4 7.8 119 704-834 96-236 (456)
251 3v97_A Ribosomal RNA large sub 98.6 7.7E-08 2.6E-12 114.7 9.5 106 713-834 539-659 (703)
252 3dou_A Ribosomal RNA large sub 98.6 2.9E-07 1E-11 92.2 12.2 97 712-834 24-141 (191)
253 3bt7_A TRNA (uracil-5-)-methyl 98.6 5.3E-08 1.8E-12 106.9 7.3 112 699-834 200-328 (369)
254 2p41_A Type II methyltransfera 98.6 4.8E-08 1.6E-12 105.4 6.7 103 713-835 82-194 (305)
255 3k6r_A Putative transferase PH 98.6 1.4E-07 4.9E-12 101.1 10.2 119 689-830 104-223 (278)
256 3fut_A Dimethyladenosine trans 98.5 2E-07 7E-12 99.4 9.7 90 702-811 36-126 (271)
257 2r6z_A UPF0341 protein in RSP 98.5 1.7E-07 5.9E-12 98.8 7.5 89 703-806 73-173 (258)
258 2b9e_A NOL1/NOP2/SUN domain fa 98.4 6.9E-07 2.3E-11 96.7 11.3 119 704-834 93-236 (309)
259 1yub_A Ermam, rRNA methyltrans 98.4 3.1E-08 1E-12 102.2 0.3 81 703-801 19-100 (245)
260 2okc_A Type I restriction enzy 98.4 1.9E-07 6.6E-12 104.9 6.6 120 702-834 160-309 (445)
261 3ftd_A Dimethyladenosine trans 98.4 1.1E-06 3.6E-11 92.3 10.7 89 702-808 20-108 (249)
262 1m6y_A S-adenosyl-methyltransf 98.3 5.4E-07 1.9E-11 97.4 7.1 84 704-801 17-105 (301)
263 3uzu_A Ribosomal RNA small sub 98.3 1.4E-06 4.7E-11 93.2 9.2 74 702-791 31-105 (279)
264 2dul_A N(2),N(2)-dimethylguano 98.3 1.1E-06 3.8E-11 97.6 8.0 133 690-832 24-164 (378)
265 3v97_A Ribosomal RNA large sub 98.2 2.6E-06 9E-11 101.6 10.5 134 695-839 172-354 (703)
266 2xyq_A Putative 2'-O-methyl tr 98.2 1.9E-06 6.4E-11 93.0 8.0 97 711-835 61-174 (290)
267 1qyr_A KSGA, high level kasuga 98.2 1.2E-06 4.2E-11 92.1 6.0 87 702-808 10-103 (252)
268 3ll7_A Putative methyltransfer 98.1 2.3E-06 8E-11 96.4 6.0 74 714-800 94-169 (410)
269 2qfm_A Spermine synthase; sper 98.1 6.3E-06 2.2E-10 91.7 9.0 113 713-831 188-313 (364)
270 2ar0_A M.ecoki, type I restric 98.0 8.3E-06 2.8E-10 94.6 7.9 130 690-834 149-314 (541)
271 3axs_A Probable N(2),N(2)-dime 97.9 2.3E-05 7.7E-10 87.9 10.1 103 712-832 51-158 (392)
272 2oyr_A UPF0341 protein YHIQ; a 97.9 2.2E-05 7.5E-10 83.3 7.8 96 703-806 76-176 (258)
273 3lkd_A Type I restriction-modi 97.8 0.00012 4E-09 85.2 13.5 122 703-835 207-361 (542)
274 3o4f_A Spermidine synthase; am 97.7 0.00019 6.5E-09 77.9 11.9 108 712-830 82-195 (294)
275 3ua3_A Protein arginine N-meth 97.6 4.6E-05 1.6E-09 90.9 6.7 104 714-830 410-531 (745)
276 4gqb_A Protein arginine N-meth 97.6 8.1E-05 2.8E-09 88.2 8.1 104 713-830 357-464 (637)
277 3khk_A Type I restriction-modi 97.6 7.6E-05 2.6E-09 86.8 7.7 121 703-835 235-398 (544)
278 3s1s_A Restriction endonucleas 97.5 0.00056 1.9E-08 82.9 14.3 117 713-835 321-468 (878)
279 3cvo_A Methyltransferase-like 97.5 0.0012 4.2E-08 67.9 14.2 106 702-831 21-152 (202)
280 1wg8_A Predicted S-adenosylmet 97.4 0.0002 6.8E-09 77.4 7.3 78 704-800 13-95 (285)
281 2b7v_A Double-stranded RNA-spe 97.4 0.00041 1.4E-08 59.8 7.6 66 14-93 2-67 (71)
282 3p1x_A Interleukin enhancer-bi 97.3 0.0005 1.7E-08 60.2 7.8 69 13-95 4-72 (75)
283 2qy6_A UPF0209 protein YFCK; s 97.3 0.00038 1.3E-08 73.6 8.0 135 696-831 36-211 (257)
284 3evf_A RNA-directed RNA polyme 97.3 0.00029 9.8E-09 75.9 6.6 116 703-834 64-186 (277)
285 1x49_A Interferon-induced, dou 97.2 0.00065 2.2E-08 62.4 7.7 78 7-96 5-85 (97)
286 4auk_A Ribosomal RNA large sub 97.2 0.0009 3.1E-08 74.8 9.4 70 712-803 210-279 (375)
287 3llh_A RISC-loading complex su 97.1 0.001 3.5E-08 60.1 7.0 70 12-94 10-82 (90)
288 1ekz_A DSRBDIII, maternal effe 97.0 0.00083 2.8E-08 58.6 6.1 69 12-93 3-74 (76)
289 2l33_A Interleukin enhancer-bi 97.0 0.0022 7.5E-08 58.5 8.7 68 13-94 14-81 (91)
290 2k4m_A TR8_protein, UPF0146 pr 96.9 0.00085 2.9E-08 66.6 5.4 96 702-835 26-124 (153)
291 3b5i_A S-adenosyl-L-methionine 96.9 0.0024 8.3E-08 71.3 9.7 121 714-834 53-227 (374)
292 2dix_A Interferon-inducible do 96.9 0.0023 7.7E-08 57.2 7.6 66 15-93 7-75 (84)
293 1uhz_A Staufen (RNA binding pr 96.9 0.0029 9.8E-08 57.3 8.2 67 15-94 5-75 (89)
294 3c6k_A Spermine synthase; sper 96.9 0.0017 5.9E-08 72.7 8.1 114 712-831 204-329 (381)
295 1di2_A XLRBPA, double stranded 96.8 0.0015 5.1E-08 55.9 5.7 63 18-93 2-68 (69)
296 3gcz_A Polyprotein; flavivirus 96.8 0.00077 2.6E-08 72.8 4.7 107 712-834 89-203 (282)
297 2zig_A TTHA0409, putative modi 96.8 0.0019 6.6E-08 68.8 7.5 54 703-760 226-279 (297)
298 3adj_A F21M12.9 protein; HYL1, 96.8 0.002 6.9E-08 56.3 6.2 66 17-94 5-74 (76)
299 4fzv_A Putative methyltransfer 96.8 0.0035 1.2E-07 69.6 9.6 124 704-834 139-286 (359)
300 2cpn_A TAR RNA-binding protein 96.7 0.0052 1.8E-07 55.6 8.7 66 15-93 15-84 (89)
301 2efj_A 3,7-dimethylxanthine me 96.7 0.0044 1.5E-07 69.5 10.1 108 714-835 53-228 (384)
302 1s29_A LA protein; winged heli 96.7 0.0011 3.9E-08 60.6 4.2 88 101-208 5-92 (92)
303 1m6e_X S-adenosyl-L-methionnin 96.7 0.0037 1.3E-07 69.5 8.9 113 714-834 52-211 (359)
304 3adl_A RISC-loading complex su 96.7 0.0028 9.5E-08 57.3 6.5 69 13-94 12-84 (88)
305 2ljh_A Double-stranded RNA-spe 96.6 0.0044 1.5E-07 58.8 8.0 70 15-98 36-105 (114)
306 1x48_A Interferon-induced, dou 96.6 0.0012 4.2E-08 59.5 4.0 68 17-97 7-77 (88)
307 3adg_A F21M12.9 protein; HYL1, 96.5 0.0023 7.7E-08 55.4 4.9 64 17-93 4-72 (73)
308 2b7t_A Double-stranded RNA-spe 96.5 0.0022 7.4E-08 55.6 4.7 65 16-94 4-71 (73)
309 2dmy_A Spermatid perinuclear R 96.5 0.0035 1.2E-07 57.5 5.9 71 13-97 13-86 (97)
310 2l2n_A Hyponastic leave 1; DSR 96.4 0.0047 1.6E-07 57.2 6.4 69 13-94 14-87 (103)
311 3ufb_A Type I restriction-modi 96.3 0.015 5.2E-07 67.3 11.3 130 690-834 197-364 (530)
312 1uil_A Double-stranded RNA-bin 96.2 0.0065 2.2E-07 57.3 6.5 64 17-93 27-98 (113)
313 1qu6_A Protein kinase PKR; dsR 96.2 0.011 3.7E-07 59.3 8.3 68 17-96 14-84 (179)
314 1whn_A Hypothetical protein ri 96.2 0.0073 2.5E-07 58.3 6.6 68 14-96 24-96 (128)
315 2khx_A Ribonuclease 3; drosha, 96.2 0.0024 8.2E-08 57.3 3.0 38 57-94 39-76 (85)
316 2wk1_A NOVP; transferase, O-me 96.1 0.019 6.7E-07 61.7 9.9 118 699-831 88-242 (282)
317 1whq_A RNA helicase A; double- 96.1 0.0098 3.3E-07 54.9 6.5 65 16-93 6-74 (99)
318 1x47_A DGCR8 protein; structur 95.9 0.0081 2.8E-07 55.2 5.2 69 13-95 13-85 (98)
319 3eld_A Methyltransferase; flav 95.8 0.0073 2.5E-07 65.7 5.1 102 713-830 81-188 (300)
320 3tka_A Ribosomal RNA small sub 95.7 0.0086 2.9E-07 66.4 5.3 81 704-800 48-134 (347)
321 3lkz_A Non-structural protein 95.6 0.048 1.7E-06 59.6 10.5 125 693-834 74-206 (321)
322 4dip_A Peptidyl-prolyl CIS-tra 95.4 0.048 1.6E-06 51.0 8.5 106 564-682 11-123 (125)
323 1t4n_A Ribonuclease III; DSRBD 95.2 0.017 5.8E-07 53.2 4.7 57 24-93 17-74 (94)
324 3p8z_A Mtase, non-structural p 95.0 0.028 9.6E-07 59.9 6.3 123 694-833 59-187 (267)
325 1g60_A Adenine-specific methyl 95.0 0.035 1.2E-06 58.0 7.0 52 704-759 204-255 (260)
326 1rjd_A PPM1P, carboxy methyl t 94.9 0.13 4.5E-06 56.3 11.7 128 700-829 80-229 (334)
327 2yt4_A Protein DGCR8; DSRBD, R 94.8 0.049 1.7E-06 57.0 7.4 70 11-94 17-90 (232)
328 2vn1_A 70 kDa peptidylprolyl i 94.7 0.069 2.4E-06 50.3 7.6 99 572-682 24-127 (129)
329 2l3j_A Double-stranded RNA-spe 94.7 0.076 2.6E-06 55.6 8.5 67 15-95 160-226 (236)
330 2nug_A Ribonuclease III, RNAse 94.6 0.047 1.6E-06 56.1 6.7 66 15-93 149-218 (221)
331 2pbc_A FK506-binding protein 2 94.5 0.057 1.9E-06 48.6 6.2 92 578-682 3-98 (102)
332 1o0w_A Ribonuclease III, RNAse 94.5 0.065 2.2E-06 56.3 7.5 68 15-94 178-249 (252)
333 1t4o_A Ribonuclease III; RNT1P 94.3 0.048 1.6E-06 52.1 5.4 65 16-93 8-76 (117)
334 2uyo_A Hypothetical protein ML 94.2 1 3.5E-05 48.8 16.4 124 699-835 85-221 (310)
335 1i4w_A Mitochondrial replicati 93.9 0.079 2.7E-06 58.7 7.1 71 703-789 42-118 (353)
336 2awg_A 38 kDa FK-506 binding p 93.8 0.2 7E-06 46.3 8.6 97 571-680 20-116 (118)
337 2f4e_A ATFKBP42; FKBP-like, al 93.5 0.13 4.5E-06 51.7 7.2 103 577-685 60-163 (180)
338 2cqk_A C-MPL binding protein; 93.1 0.03 1E-06 52.2 1.8 85 102-208 10-94 (101)
339 2l3j_A Double-stranded RNA-spe 93.1 0.14 4.9E-06 53.5 7.0 66 17-96 8-73 (236)
340 1yat_A FK506 binding protein; 93.1 0.28 9.6E-06 44.9 8.2 90 577-679 17-111 (113)
341 1qu6_A Protein kinase PKR; dsR 92.7 0.097 3.3E-06 52.4 4.9 66 14-92 102-170 (179)
342 2lgo_A FKBP; infectious diseas 92.6 0.34 1.2E-05 46.0 8.3 90 577-679 35-129 (130)
343 2ppn_A FK506-binding protein 1 92.4 0.33 1.1E-05 43.8 7.6 91 577-680 11-106 (107)
344 2y78_A Peptidyl-prolyl CIS-tra 92.1 0.33 1.1E-05 46.3 7.5 86 554-648 17-107 (133)
345 3kz7_A FK506-binding protein 3 92.0 0.61 2.1E-05 43.0 9.1 90 579-680 18-118 (119)
346 3o5q_A Peptidyl-prolyl CIS-tra 92.0 0.34 1.1E-05 45.6 7.4 91 577-680 30-125 (128)
347 3o5e_A Peptidyl-prolyl CIS-tra 91.5 0.42 1.4E-05 46.1 7.5 91 577-680 46-141 (144)
348 2a11_A Ribonuclease III, RNAse 91.4 0.036 1.2E-06 57.7 0.0 38 57-94 194-231 (242)
349 2px2_A Genome polyprotein [con 91.1 0.28 9.7E-06 52.7 6.4 125 693-835 53-186 (269)
350 3n3w_A Ribonuclease III; nucle 90.8 0.044 1.5E-06 57.7 0.0 37 57-93 210-246 (248)
351 3c4b_A Endoribonuclease dicer; 90.8 0.27 9.1E-06 51.7 5.9 64 15-93 199-262 (265)
352 1g55_A DNA cytosine methyltran 90.8 0.15 5.1E-06 55.7 4.2 71 714-801 2-75 (343)
353 2d9f_A FK506-binding protein 8 90.3 0.32 1.1E-05 46.3 5.5 105 569-685 22-126 (135)
354 2jwx_A FKBP38NTD, FK506-bindin 90.0 0.61 2.1E-05 46.1 7.3 101 568-680 47-147 (157)
355 3b7x_A FK506-binding protein 6 89.8 0.33 1.1E-05 46.2 5.1 93 577-681 37-133 (134)
356 3g7u_A Cytosine-specific methy 89.5 0.47 1.6E-05 52.7 6.8 68 715-801 3-78 (376)
357 3uf8_A Ubiquitin-like protein 88.2 1.2 4E-05 45.8 8.2 90 577-679 115-208 (209)
358 1lss_A TRK system potassium up 88.1 6.2 0.00021 35.5 12.2 102 714-841 4-111 (140)
359 2lkn_A AH receptor-interacting 88.1 0.76 2.6E-05 46.0 6.5 71 577-649 21-94 (165)
360 1r9h_A FKB-6, FK506 binding pr 87.7 0.74 2.5E-05 43.8 5.9 93 577-682 25-122 (135)
361 2kou_A Dicer-like protein 4; A 86.8 0.79 2.7E-05 42.4 5.4 60 29-103 26-92 (102)
362 3rv0_A K. polysporus DCR1; RNA 86.8 0.13 4.3E-06 57.0 0.0 41 53-95 281-321 (341)
363 2c7p_A Modification methylase 86.7 1.2 4.2E-05 48.4 7.7 67 714-801 11-78 (327)
364 1hxv_A Trigger factor; FKBP fo 86.5 1 3.5E-05 41.9 6.0 61 580-646 29-91 (113)
365 3r24_A NSP16, 2'-O-methyl tran 86.3 1.7 5.9E-05 47.7 8.4 119 697-842 88-227 (344)
366 2yt4_A Protein DGCR8; DSRBD, R 86.3 0.44 1.5E-05 49.8 3.7 34 57-93 164-197 (232)
367 3fwz_A Inner membrane protein 86.1 3.1 0.00011 38.8 9.3 101 715-842 8-115 (140)
368 2if4_A ATFKBP42; FKBP-like, al 85.1 0.83 2.8E-05 48.6 5.3 102 577-684 60-162 (338)
369 3pr9_A FKBP-type peptidyl-prol 84.3 1 3.4E-05 44.6 5.0 59 582-648 3-78 (157)
370 1u79_A FKBP-type peptidyl-prol 83.4 1.5 5E-05 41.3 5.6 65 577-648 23-97 (129)
371 3ius_A Uncharacterized conserv 83.3 10 0.00036 38.5 12.4 93 715-833 6-104 (286)
372 3qv2_A 5-cytosine DNA methyltr 82.7 1.9 6.6E-05 47.0 7.0 70 714-801 10-83 (327)
373 2py6_A Methyltransferase FKBM; 81.5 1.6 5.4E-05 48.8 5.9 48 712-759 225-273 (409)
374 3llv_A Exopolyphosphatase-rela 81.4 9 0.00031 35.2 10.1 102 714-842 6-113 (141)
375 1q1c_A FK506-binding protein 4 81.3 2.9 9.9E-05 44.6 7.6 93 577-682 62-159 (280)
376 3jxv_A 70 kDa peptidyl-prolyl 80.9 3 0.0001 45.7 7.7 94 579-680 141-234 (356)
377 2vz8_A Fatty acid synthase; tr 80.9 0.61 2.1E-05 63.2 2.7 103 713-832 1240-1348(2512)
378 2kr7_A FKBP-type peptidyl-prol 79.9 2.1 7.2E-05 41.7 5.5 62 581-648 7-71 (151)
379 2kfw_A FKBP-type peptidyl-prol 79.8 1.7 5.9E-05 44.5 5.0 61 581-648 3-66 (196)
380 4f3n_A Uncharacterized ACR, CO 79.6 5.1 0.00017 45.7 9.2 90 704-809 128-222 (432)
381 4dt4_A FKBP-type 16 kDa peptid 79.5 1.9 6.6E-05 43.2 5.2 61 581-648 25-89 (169)
382 1x47_A DGCR8 protein; structur 78.9 1.7 5.9E-05 39.7 4.2 77 389-504 12-88 (98)
383 3cgm_A SLYD, peptidyl-prolyl C 78.9 1.8 6.3E-05 42.7 4.7 58 582-648 4-61 (158)
384 3prb_A FKBP-type peptidyl-prol 78.8 2 6.8E-05 45.2 5.2 59 582-648 3-78 (231)
385 1kt0_A FKBP51, 51 kDa FK506-bi 78.6 1.6 5.5E-05 48.5 4.8 65 577-648 42-111 (457)
386 1boo_A Protein (N-4 cytosine-s 78.2 2.1 7.2E-05 46.2 5.4 45 712-759 251-295 (323)
387 1ix5_A FKBP; ppiase, isomerase 77.9 1.5 5E-05 42.9 3.6 61 581-648 2-79 (151)
388 2voo_A Lupus LA protein; RNA-b 77.9 1.1 3.7E-05 45.0 2.8 87 102-208 8-95 (193)
389 2k8i_A SLYD, peptidyl-prolyl C 76.7 1.9 6.6E-05 43.1 4.2 61 581-648 3-66 (171)
390 3c85_A Putative glutathione-re 75.8 12 0.0004 36.1 9.4 95 714-836 39-143 (183)
391 3ubt_Y Modification methylase 75.4 5 0.00017 42.6 7.2 66 715-800 1-67 (331)
392 4h0n_A DNMT2; SAH binding, tra 75.4 1.7 5.8E-05 47.6 3.7 69 715-800 4-75 (333)
393 3adg_A F21M12.9 protein; HYL1, 74.6 3 0.0001 35.7 4.3 69 394-499 4-72 (73)
394 2qrv_A DNA (cytosine-5)-methyl 74.2 3.8 0.00013 44.2 6.0 72 713-801 15-90 (295)
395 3vyw_A MNMC2; tRNA wobble urid 73.4 11 0.00037 41.2 9.4 140 686-831 61-224 (308)
396 1eg2_A Modification methylase 73.3 3.5 0.00012 44.7 5.5 52 704-759 234-288 (319)
397 3l4b_C TRKA K+ channel protien 72.5 19 0.00066 35.7 10.3 102 716-843 2-110 (218)
398 3two_A Mannitol dehydrogenase; 71.6 7.5 0.00025 41.6 7.5 46 709-756 172-218 (348)
399 1ekz_A DSRBDIII, maternal effe 71.3 4.4 0.00015 34.9 4.6 68 393-499 7-74 (76)
400 3iei_A Leucine carboxyl methyl 70.7 53 0.0018 36.0 14.1 131 701-832 73-229 (334)
401 1id1_A Putative potassium chan 70.1 35 0.0012 31.9 11.0 105 714-842 3-115 (153)
402 1p5q_A FKBP52, FK506-binding p 70.0 11 0.00038 39.9 8.3 94 577-684 36-133 (336)
403 1zkd_A DUF185; NESG, RPR58, st 68.2 12 0.0004 42.1 8.4 78 714-809 81-164 (387)
404 3l9w_A Glutathione-regulated p 68.0 14 0.00048 41.4 9.0 102 714-842 4-112 (413)
405 3oe2_A Peptidyl-prolyl CIS-tra 66.1 10 0.00035 39.5 6.9 89 577-680 128-217 (219)
406 1q1c_A FK506-binding protein 4 64.9 6.3 0.00022 42.0 5.2 94 577-684 179-276 (280)
407 3jxv_A 70 kDa peptidyl-prolyl 64.0 7.5 0.00026 42.5 5.7 91 579-680 258-353 (356)
408 3me5_A Cytosine-specific methy 63.8 7.2 0.00024 45.0 5.7 60 714-789 88-147 (482)
409 2ew2_A 2-dehydropantoate 2-red 63.7 67 0.0023 32.9 12.6 101 715-834 4-109 (316)
410 2oo3_A Protein involved in cat 62.8 3.4 0.00012 44.7 2.6 73 712-801 90-166 (283)
411 2g1u_A Hypothetical protein TM 61.9 18 0.00063 34.0 7.3 102 712-839 17-125 (155)
412 1di2_A XLRBPA, double stranded 60.6 7 0.00024 33.0 3.7 68 394-499 1-68 (69)
413 2aef_A Calcium-gated potassium 60.4 41 0.0014 33.6 10.0 99 714-843 9-116 (234)
414 1q6h_A FKBP-type peptidyl-prol 57.4 15 0.00053 38.1 6.4 87 577-679 132-222 (224)
415 3pvc_A TRNA 5-methylaminomethy 57.2 8.2 0.00028 45.5 4.8 149 685-833 21-211 (689)
416 1lnq_A MTHK channels, potassiu 57.0 35 0.0012 36.3 9.2 102 714-843 115-222 (336)
417 3adj_A F21M12.9 protein; HYL1, 56.7 7.3 0.00025 33.7 3.2 68 395-499 6-73 (76)
418 3goh_A Alcohol dehydrogenase, 55.6 12 0.0004 39.4 5.2 47 707-756 136-183 (315)
419 2l2n_A Hyponastic leave 1; DSR 55.2 11 0.00038 34.6 4.3 70 393-499 17-86 (103)
420 3ggo_A Prephenate dehydrogenas 54.9 39 0.0013 36.1 9.3 93 714-832 33-127 (314)
421 1fd9_A Protein (macrophage inf 54.6 15 0.0005 38.0 5.6 90 577-681 117-210 (213)
422 3adl_A RISC-loading complex su 54.2 12 0.00041 33.5 4.3 76 386-499 8-83 (88)
423 1uil_A Double-stranded RNA-bin 53.7 8.5 0.00029 36.1 3.3 87 380-500 13-99 (113)
424 2db2_A KIAA0890 protein; DSRM 53.1 25 0.00086 33.5 6.3 92 13-113 14-111 (119)
425 3ps9_A TRNA 5-methylaminomethy 53.0 39 0.0013 39.6 9.5 150 683-832 27-218 (676)
426 2dph_A Formaldehyde dismutase; 52.7 13 0.00045 40.6 5.2 48 707-756 179-228 (398)
427 2f1k_A Prephenate dehydrogenas 52.1 67 0.0023 32.8 10.1 87 716-832 2-90 (279)
428 1whn_A Hypothetical protein ri 51.7 17 0.0006 34.8 5.2 81 379-499 12-93 (128)
429 4g65_A TRK system potassium up 51.5 33 0.0011 38.9 8.4 99 713-837 2-107 (461)
430 1jvw_A Macrophage infectivity 51.4 14 0.00046 36.7 4.6 92 577-683 48-144 (167)
431 2dix_A Interferon-inducible do 51.0 16 0.00056 32.2 4.6 69 392-499 7-75 (84)
432 3tos_A CALS11; methyltransfera 50.2 1.2E+02 0.004 32.2 11.8 110 712-830 68-214 (257)
433 1f8f_A Benzyl alcohol dehydrog 50.2 16 0.00056 39.3 5.4 49 707-756 184-233 (371)
434 1uhz_A Staufen (RNA binding pr 50.0 11 0.00039 33.7 3.4 70 392-499 5-74 (89)
435 3ado_A Lambda-crystallin; L-gu 48.0 1.6E+02 0.0056 31.9 12.8 162 713-893 5-183 (319)
436 4e12_A Diketoreductase; oxidor 47.3 27 0.00093 36.4 6.4 105 715-831 5-119 (283)
437 1zcj_A Peroxisomal bifunctiona 46.6 1.1E+02 0.0036 34.7 11.5 106 715-831 38-148 (463)
438 2cpn_A TAR RNA-binding protein 45.2 14 0.00049 33.1 3.3 69 393-499 16-84 (89)
439 3oig_A Enoyl-[acyl-carrier-pro 45.2 1.7E+02 0.0059 29.4 11.8 78 712-804 5-97 (266)
440 3c24_A Putative oxidoreductase 44.5 89 0.0031 32.3 9.8 86 715-832 12-100 (286)
441 1pl8_A Human sorbitol dehydrog 44.4 31 0.0011 36.9 6.4 48 707-756 165-214 (356)
442 2dpo_A L-gulonate 3-dehydrogen 44.2 60 0.0021 35.0 8.7 106 714-831 6-121 (319)
443 3s2e_A Zinc-containing alcohol 44.0 30 0.001 36.7 6.2 48 707-756 160-208 (340)
444 1bg6_A N-(1-D-carboxylethyl)-L 42.4 68 0.0023 33.8 8.6 102 715-834 5-110 (359)
445 1yqd_A Sinapyl alcohol dehydro 40.0 38 0.0013 36.5 6.3 46 709-756 182-229 (366)
446 3d1l_A Putative NADP oxidoredu 38.7 1.1E+02 0.0039 30.9 9.4 91 714-834 10-103 (266)
447 1kol_A Formaldehyde dehydrogen 38.7 40 0.0014 36.6 6.3 48 708-756 180-228 (398)
448 4dvj_A Putative zinc-dependent 38.6 67 0.0023 34.7 7.9 42 713-756 171-215 (363)
449 3lyl_A 3-oxoacyl-(acyl-carrier 37.5 93 0.0032 30.9 8.3 76 713-804 4-92 (247)
450 3uog_A Alcohol dehydrogenase; 36.9 49 0.0017 35.5 6.6 51 704-756 180-231 (363)
451 3f9i_A 3-oxoacyl-[acyl-carrier 36.7 73 0.0025 31.7 7.4 74 712-804 12-94 (249)
452 2g5c_A Prephenate dehydrogenas 36.7 2E+02 0.007 29.3 10.9 90 715-831 2-94 (281)
453 3qiv_A Short-chain dehydrogena 35.9 1.1E+02 0.0038 30.5 8.6 76 713-804 8-96 (253)
454 1e3j_A NADP(H)-dependent ketos 35.8 51 0.0018 35.1 6.4 48 707-756 162-210 (352)
455 3swr_A DNA (cytosine-5)-methyl 35.6 38 0.0013 42.6 6.0 44 713-757 539-582 (1002)
456 3o26_A Salutaridine reductase; 34.9 91 0.0031 31.7 7.9 77 713-804 11-101 (311)
457 3fpc_A NADP-dependent alcohol 34.6 78 0.0027 33.7 7.6 49 707-756 160-209 (352)
458 3o38_A Short chain dehydrogena 34.1 1.1E+02 0.0038 30.8 8.3 78 712-804 20-111 (266)
459 3mog_A Probable 3-hydroxybutyr 33.5 1.1E+02 0.0039 34.9 9.1 100 715-831 6-118 (483)
460 1uuf_A YAHK, zinc-type alcohol 33.2 46 0.0016 36.0 5.6 46 709-756 190-236 (369)
461 2hmt_A YUAA protein; RCK, KTN, 33.1 1.1E+02 0.0038 27.2 7.3 103 714-842 6-114 (144)
462 3gt0_A Pyrroline-5-carboxylate 32.9 34 0.0012 34.8 4.3 94 715-835 3-99 (247)
463 1cdo_A Alcohol dehydrogenase; 32.9 41 0.0014 36.2 5.2 48 707-756 186-235 (374)
464 1kt0_A FKBP51, 51 kDa FK506-bi 32.8 68 0.0023 35.4 7.0 92 579-684 160-254 (457)
465 2ae2_A Protein (tropinone redu 32.7 1.1E+02 0.0036 31.0 7.9 76 713-804 8-97 (260)
466 1y1p_A ARII, aldehyde reductas 32.7 2.8E+02 0.0097 28.3 11.3 79 713-807 10-96 (342)
467 1v3u_A Leukotriene B4 12- hydr 32.5 46 0.0016 35.1 5.3 47 707-755 139-187 (333)
468 2cf5_A Atccad5, CAD, cinnamyl 32.3 35 0.0012 36.6 4.5 45 709-755 175-221 (357)
469 3e8x_A Putative NAD-dependent 32.3 97 0.0033 30.5 7.4 72 712-805 19-95 (236)
470 4da9_A Short-chain dehydrogena 32.2 1.3E+02 0.0045 31.0 8.7 80 709-804 24-117 (280)
471 3abi_A Putative uncharacterize 32.2 17 0.0006 39.3 2.1 66 713-801 15-84 (365)
472 3zwc_A Peroxisomal bifunctiona 32.1 6.1E+02 0.021 30.7 15.5 162 714-895 316-491 (742)
473 2jhf_A Alcohol dehydrogenase E 32.0 44 0.0015 36.0 5.2 48 707-756 185-234 (374)
474 2vhw_A Alanine dehydrogenase; 32.0 48 0.0017 36.4 5.6 43 712-757 166-210 (377)
475 2wsb_A Galactitol dehydrogenas 31.8 1.1E+02 0.0036 30.4 7.6 73 713-804 10-95 (254)
476 2cdc_A Glucose dehydrogenase g 31.6 1.1E+02 0.0038 32.8 8.2 41 714-756 181-225 (366)
477 2cfc_A 2-(R)-hydroxypropyl-COM 31.4 1.7E+02 0.0057 28.9 9.0 75 714-803 2-89 (250)
478 1pjc_A Protein (L-alanine dehy 30.8 71 0.0024 34.8 6.6 42 713-757 166-209 (361)
479 1p0f_A NADP-dependent alcohol 30.6 39 0.0013 36.4 4.4 50 705-756 183-234 (373)
480 1e3i_A Alcohol dehydrogenase, 30.4 47 0.0016 35.8 5.1 50 705-756 187-238 (376)
481 1ae1_A Tropinone reductase-I; 30.3 1.2E+02 0.0042 30.9 8.0 76 713-804 20-109 (273)
482 3nx4_A Putative oxidoreductase 30.2 82 0.0028 32.9 6.8 39 716-756 149-189 (324)
483 1x49_A Interferon-induced, dou 30.1 39 0.0014 30.7 3.7 68 394-499 15-82 (97)
484 2zwa_A Leucine carboxyl methyl 30.0 3.6E+02 0.012 31.7 12.9 116 713-830 107-252 (695)
485 3p2y_A Alanine dehydrogenase/p 29.9 18 0.00062 40.5 1.7 41 713-756 183-225 (381)
486 3tri_A Pyrroline-5-carboxylate 29.5 89 0.0031 32.7 6.9 93 715-834 4-99 (280)
487 1t11_A Trigger factor, TF; hel 29.4 41 0.0014 37.5 4.5 59 581-645 161-221 (392)
488 1fmc_A 7 alpha-hydroxysteroid 29.3 87 0.003 31.0 6.5 76 713-804 10-98 (255)
489 3tjr_A Short chain dehydrogena 29.2 1.5E+02 0.0051 30.9 8.6 78 711-804 28-118 (301)
490 1pqw_A Polyketide synthase; ro 29.1 32 0.0011 33.3 3.2 45 709-755 34-80 (198)
491 4g65_A TRK system potassium up 29.1 2.1E+02 0.0072 32.3 10.3 106 712-842 233-343 (461)
492 2fzw_A Alcohol dehydrogenase c 29.0 43 0.0015 35.9 4.4 50 705-756 182-233 (373)
493 3m6i_A L-arabinitol 4-dehydrog 28.8 64 0.0022 34.5 5.7 49 707-757 173-223 (363)
494 3h7a_A Short chain dehydrogena 28.5 1.2E+02 0.0041 30.7 7.5 76 713-804 6-93 (252)
495 3d4o_A Dipicolinate synthase s 28.4 1.4E+02 0.0048 31.2 8.2 90 711-832 152-243 (293)
496 2rir_A Dipicolinate synthase, 28.4 1.4E+02 0.0046 31.4 8.1 90 711-832 154-245 (300)
497 4fn4_A Short chain dehydrogena 28.0 1.8E+02 0.0061 30.4 8.8 75 712-802 5-92 (254)
498 3t4x_A Oxidoreductase, short c 27.8 1.3E+02 0.0044 30.6 7.6 79 712-804 8-95 (267)
499 3ppi_A 3-hydroxyacyl-COA dehyd 27.3 1.3E+02 0.0044 30.7 7.5 71 712-801 28-110 (281)
500 2dmy_A Spermatid perinuclear R 27.2 45 0.0015 30.2 3.6 72 388-499 11-82 (97)
No 1
>3htx_A HEN1; HEN1, small RNA methyltransferase, protein-RNA complex; HET: SAH; 3.10A {Arabidopsis thaliana}
Probab=100.00 E-value=1.1e-279 Score=2429.25 Aligned_cols=895 Identities=52% Similarity=0.838 Sum_probs=740.5
Q ss_pred CCCCcccccccCCCChHhHHHHhccCceeEEEeeeeccccCCCCccccCCCCCceEEEeeecCCceeeeccccccchHHH
Q 002218 3 NGGLSVVAVRKMKLTPKAIIVQKFGRNAQFTVDEVQDVVQNGCPGLAIPQKGPCLYRCSLQLPEFSVVSETFKKKKDAEQ 82 (952)
Q Consensus 3 ~~~~~~~~~~~~~~tpka~~~q~~g~~~~y~~~ev~~~~~~~~~~~~~~q~~~~~~~c~l~lp~~~v~~~~~~~kkdaeq 82 (952)
|+|+ +|+|+|||||||||||+|||||||||||++|+|||||||||||||||||+||||||+||||+|||||||||
T Consensus 9 ~~~~-----~~~~~~pk~~~~q~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~~lp~~~~~~~~~~~kkd~eq 83 (950)
T 3htx_A 9 MAGG-----GKHTPTPKAIIHQKFGAKASYTVEEVHDSSQSGCPGLAIPQKGPCLYRCHLQLPEFSVVSNVFKKKKDSEQ 83 (950)
T ss_dssp -----------CCCCCHHHHHHTTGGGSEEEEEEECCSCSCCCTTCCSCCCCCCEEEEEEECSSCEEECCCBSCHHHHHH
T ss_pred ccCC-----CCCCCCHHHHHHHHhCcceeeeehhhhcccCCCCCccccCCCCCeeEEEEeeCCCceEecchhhccccHHH
Confidence 5666 79999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHcCCCCCCCCCChHHHHHHHHHHHhhhhcccccccCCCchhhhHHhhhhcCcccccccceEEEeeccccccc
Q 002218 83 SAAEKALEKLGIDPSPNVPSAEEAWDKLIASVKHLFSNEFLSSQSPLRGHFIAALRRDGDLYGSVPASVIAVCDSKLANL 162 (952)
Q Consensus 83 ~aa~~al~klg~~~~~~~~~~~e~~~~l~~~~~~~f~~e~~~~~~pl~~h~~~~~~r~g~~~g~~p~~~~~~~d~k~~~~ 162 (952)
+||++||+||||+|+|++||++|+||+||+||+|+|+|||++++|||+|||||||||||||||+||+||||+||+||+|+
T Consensus 84 ~aa~~al~~~g~~~~~~~~~~~~~~~~~~~~~~~~f~~e~~~~~~pl~~h~~~~~~r~~~~~~~~p~~~~~~~d~k~~~~ 163 (950)
T 3htx_A 84 SAAELALDKLGIRPQNDDLTVDEARDEIVGRIKYIFSDEFLSAEHPLGAHLRAALRRDGERCGSVPVSVIATVDAKINSR 163 (950)
T ss_dssp HHHHHHHTTTTSTTTSCCCCHHHHHHHHHHHHHHHTSTGGGGCSSTHHHHHHHHHTSCGGGTTEECHHHHHHTCHHHHHH
T ss_pred HHHHHHHHHhCCCccccCcchhhHHHHHHHHHHHHhhhhhhhccCchHHHHHHHHhhcCccccccchhhheehhhhhhhh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccccCcccccchHHHHHHHHHHhhccCCcEEeecCceeeeecCCCChhhhhhhhhhccCCCCcEEEEEEEecccccccee
Q 002218 163 CKLINPKVESSHLLVLTYIMRAATRLSEFVVTSEGQLSIWRKDPYPPEIKESSIIQQSESPDSICIEAIHIPSSLEMAVH 242 (952)
Q Consensus 163 ck~~~~~~e~~p~~~~~~~~~a~~~~~~~~~~s~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~av~ip~~~~~~~~ 242 (952)
||+|||+||+|||||+|||||||++|||++ ||++| |||||+|||||||++++++||+++|+|+||||||||++|++|+
T Consensus 164 ck~~~~~~e~~p~~~~~~~~~a~~~~~~~~-~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 241 (950)
T 3htx_A 164 CKIINPSVESDPFLAISYVMKAAAKLADYI-VASPH-GLRRKNAYPSEIVEALATHVSDSLHSREVAAVYIPCIDEEVVE 241 (950)
T ss_dssp HHHHCTHHHHCTHHHHHHHHHHHHHCCSSE-EEETT-EEEESSCCCHHHHHHHHHTCCCC---EEEEEEEECSSTTSCCE
T ss_pred hhhcCcccccChHHHHHHHHHHhhcCCCcE-EeCCc-ccccCCCCCHHHHHHHHHHhcCCCcceEEEEEEeeccccccee
Confidence 999999999999999999999999999966 89999 9999999999999999999999999999999999999999999
Q ss_pred eEEEEecCCcchHHHHHHhcCCCCCCeEEEEeeccccCCc--ceEEeeecCccccccccCC---CCCccccccccCCCCC
Q 002218 243 PVTLNVSSTGYYLDVIARNLDQTDGNKILVSSRTIGKASS--EMRLYFAAPKSYLLDLSSD---LPNVEEVVDFEGSLNP 317 (952)
Q Consensus 243 ~~~l~~~~~~~y~~~ia~~l~~~d~~~v~~~sr~~~k~~~--e~r~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~n~ 317 (952)
+|||||||++||||+||++||++|+||||| ||||||||| ||||||+||| +++|++|+ ++|++| +|+||++|+
T Consensus 242 ~~~~~~~~~~~y~~~~a~~l~~~d~~~~~~-sr~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~-~~~~~~~n~ 318 (950)
T 3htx_A 242 LDTLYISSNRHYLDSIAERLGLKDGNQVMI-SRMFGKASCGSECRLYSEIPK-KYLDNSSDASGTSNEDS-SHIVKSRNA 318 (950)
T ss_dssp EEEEEECTTSCHHHHHHHHHTCSCSSSEEE-CCCBCHHHHSSCBEEEEECCH-HHHCCC-------------CCCCCBCH
T ss_pred eeEEEecCCcchHHHHHHHhCCCccceEEE-EeeccCCCCCcceeEEEecch-hhhhhhhcccccccccc-ccccccccc
Confidence 999999999999999999999999999999 999999999 9999999999 66677776 999999 999999999
Q ss_pred ccccccccccccceeeeeccceeecCCccccccchhhhhhhhhccCCCcccccchhhhhhhcCCcceeeccccCCCChhh
Q 002218 318 RASYLYGQDIYGDAILASIGYTRKSEGLFHEDITLQSYYRMLIHLTPSGVYKLSREAILTAELPMAFTTRTNWRGSFPRE 397 (952)
Q Consensus 318 ras~~~~~~i~g~ai~a~~g~~~~~~~l~~~~~~~~~~~r~~~~~~p~g~yk~sr~~~~~a~lp~~~t~~~~w~g~~pr~ 397 (952)
||||||||+||||||||+|||||||++||||||||+|||||||||+|||||||||+||||||||++||||+||||+||||
T Consensus 319 ra~~~~~~~i~~~~~~a~~~~~~~~~~~~~~~~~~~~~~r~~~~~~p~g~~k~sr~~~~~a~lp~~~t~~~~w~g~~pr~ 398 (950)
T 3htx_A 319 RASYICGQDIHGDAILASVGYRWKSDDLDYDDVTVNSFYRICCGMSPNGIYKISRQAVIAAQLPFAFTTKSNWRGPLPRE 398 (950)
T ss_dssp HHHHHHTSCCBSCEEEEEEEECSSCSSEEEECCCHHHHHHHHHTTSHHHHHHHHHTCTTTBCCCSCCCCTTTCCSSCHHH
T ss_pred cceeeecccccchhhhhhcCccccccccccccchhhhhHHHHhccCCCcceecchhhhhhhcCCcceecccccCCCChHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhhhhhcccCcceeccccCCccccccchhhhhhhhhcccccccccccCCCcccCCCc------eeEEEEEeeccCCcc
Q 002218 398 MLFMFCRQHWLSEPVFSTCSNSLKESSESSRFYEKSAALESAETGKECTSGGGTAASDN------VRCEVKIFSKSRDPI 471 (952)
Q Consensus 398 ~l~~fc~~~~l~ep~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------f~c~v~~~s~~~~~~ 471 (952)
|||+|||||||+||+|+++++|+|++|+++||++++ ++++++++| ||+|+++++| |||||||+||+||||
T Consensus 399 ~l~~fc~~~~l~~~~~~~~~~~~k~~~~~~~~~~~~---~~~~~~~~~-~~~~~~~~~~~~~~~~f~c~~~~~~~~~~~~ 474 (950)
T 3htx_A 399 ILGLFCHQHRLAEPILSSSTAPVKSLSDIFRSHKKL---KVSGVDDAN-ENLSRQKEDTPGLGHGFRCEVKIFTKSQDLV 474 (950)
T ss_dssp HHHHHHHTTTCCCCEEECCC------------------------------------------------CEEEEEETTEEE
T ss_pred HHHHHHHHhhcCcceeeeccCccccccccccccccc---cccccchhh-hcCCcccCCCCCcccceEEEEEEEecccchh
Confidence 999999999999999999999999999999999999 778888888 9999999988 999999999999999
Q ss_pred cccCchhhhhhhhhhHhhhhhHHHHHHHhhhCCCCCCccccccccCcCCeeeccchhhhhcccccchhcccccccccccc
Q 002218 472 LECSPKEFYKKQNESIENASLKVLSWLNAYFKDPDIPLEKLNNLVGALDIQCYPQNFFKKFSSYRFIHNVQQRKMGEKLL 551 (952)
Q Consensus 472 ~~~~~~~~~~~~~dai~~a~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 551 (952)
|||||+++|+||||||||||||||+|||+|||+||||+||||+++|++||+|+|+||+|||+||||
T Consensus 475 ~~~~~~~~~~~~~~a~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------------- 540 (950)
T 3htx_A 475 LECSPRKFYEKENDAIQNASLKALLWFSKFFADLDVDGEQSCDTDDDQDTKSSSPNVFAAPPILQK-------------- 540 (950)
T ss_dssp EEECCSCCCSSHHHHHHHHHHHHHHHHHTSSCCC----------------------------------------------
T ss_pred hccChhhhhhhccHHHHHHHHHHHHHHHHHHhccCCchhhcccccccccccccchhhhhhhhcccc--------------
Confidence 999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccccccccccCCCCceeeeccCCCCCCccCCCCceeEEEEEEEEeecccchhh---------------------------
Q 002218 552 QANSINTLNAIPEHGIYCLSIGGPDSGIYPSNGCLSFISYSVSLVIEGETMKE--------------------------- 604 (952)
Q Consensus 552 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~gs~~~i~y~~~l~~~~~~~~~--------------------------- 604 (952)
+++|++++|+++|+++++++| |||||+||||+||||+||+++||
T Consensus 541 ~~~~~~~~~~~~~~~~~~~~i---------~~gs~~~~~y~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 611 (950)
T 3htx_A 541 EHSSESKNTNVLSAEKRVQSI---------TNGSVVSICYSLSLAVDPEYSSDGESPREDNESNEEMESEYSANCESSVE 611 (950)
T ss_dssp --CCCEECC----------CC---------CTTEEEEEEEEEEEEECC----------------------------CCCE
T ss_pred ccccccccccccccceeeecc---------CCCcEEEEEEEEEEEecCcccccccccccccccccccccccccchhhhhh
Confidence 999999999999999999999 99999999999999999999999
Q ss_pred hhccccceEEEeccCccchhhhhhhhhccccccceecccCC--chhhhhhhccCcccchhcccccccccceeeeecccCC
Q 002218 605 LLESREEFEFEMGTGAVIPQVEVVTAQMSVGQSACFCKELP--PQELILAAADDSARTFSLLSSRACCLEYHITLLRVTE 682 (952)
Q Consensus 605 ~~e~~~~~~fe~g~~a~~~~l~~v~~q~sv~q~~~~~~~l~--~~~l~lAa~~~~~~DiSlLs~d~~~LEyyI~LL~v~e 682 (952)
+||||+||+||||.|+++++|+.+|+|||+||+++|.+.+| |++|+++|........+.|+...+| +|....+...+
T Consensus 612 ~ies~~e~~fe~g~g~~~~~le~vV~qms~gqT~~F~~~~Pd~p~eLLLaAa~ep~R~~slLsre~~f-Eyals~lay~d 690 (950)
T 3htx_A 612 PIESNEEIEFEVGTGSMNPHIESEVTQMTVGEYASFKMTPPDAAEALILAVGSDTVRIRSLLSERPCL-NYNILLLGVKG 690 (950)
T ss_dssp EEEEEEEEEEEETTTCBCHHHHHHHTTCCTTCEEEEEESSCCSCHHHHHHHCSCHHHHHHHTTSCEEE-EEEEEEEEEEC
T ss_pred cccccHHHHHHHhcCCccchhhheeeeccccceeEEeccCcchHHHHHHHHhhcchhhhhhcchhhhh-hHHhhhhcccc
Confidence 99999999999999999999999999999999999999999 9999999999999999999999997 99999998888
Q ss_pred ChhhhhhhhcCCchhHHHHHHHHHHHhhcCCCCEEEEEcCccchHHHHHhcCCCCCceEEEEeCChHHHHHHHHHHhhhh
Q 002218 683 PPEDRMEQALFSPPLSKQRVEYALQHIKESCATTLVDFGCGSGSLLDSLLDYPTALEKIVGVDISQKSLSRAAKIIHSKL 762 (952)
Q Consensus 683 p~EeRye~~~F~PPL~~QR~efVldlL~~~k~krVLDIGCGeG~ll~~LAr~g~~~~qVVGVDISeemLe~ArkrLsa~l 762 (952)
..+++++...|.||++.+|++++.+.+...++.+|||||||+|.++..|++.+++..+|+|||+|+.|++.|++++....
T Consensus 691 ea~p~me~gtFsPPL~eqRle~LLelL~~~~g~rVLDVGCGTG~lai~LAr~g~p~a~VtGVDIS~emLe~AReRLa~~l 770 (950)
T 3htx_A 691 PSEERMEAAFFKPPLSKQRVEYALKHIRESSASTLVDFGCGSGSLLDSLLDYPTSLQTIIGVDISPKGLARAAKMLHVKL 770 (950)
T ss_dssp SCCCCCCCCCSSSCHHHHHHHHHHHHHHHSCCSEEEEETCSSSHHHHHHTSSCCCCCEEEEEESCHHHHHHHHHHHHHHT
T ss_pred chhhHHhhCcCCchHHHHHHHHHHHHhcccCCCEEEEECCCCCHHHHHHHHhCCCCCeEEEEECCHHHHHHHHHHhhhcc
Confidence 88899999999999999999999999988889999999999999999999987445799999999999999998776432
Q ss_pred hcccccCCCCCCCccEEEEEcCccccCCCCCCccEEEEccccccCChhHHHHHHHHHHHccCCCEEEEEecCCchhHHHH
Q 002218 763 SKKLDAAVPCTDVKSAVLFDGSITVFDSRLHGFDIGTCLEVIEHMEEDEASQFGNIVLSSFRPRILIVSTPNYEYNAILQ 842 (952)
Q Consensus 763 a~~~~~l~Pr~~~~nVtf~qGDa~dLpf~d~sFDVVVcieVIEHL~dD~l~~L~eeI~RvLKPG~LIISTPN~efN~lf~ 842 (952)
.. .+.+..+++++++|+.++++.++.||+|++.++|||++++....+.++++++||||.++|+|||.++|..+.
T Consensus 771 nA------kr~gl~nVefiqGDa~dLp~~d~sFDlVV~~eVLeHL~dp~l~~~L~eI~RvLKPG~LIISTPN~eyN~lF~ 844 (950)
T 3htx_A 771 NK------EACNVKSATLYDGSILEFDSRLHDVDIGTCLEVIEHMEEDQACEFGEKVLSLFHPKLLIVSTPNYEFNTILQ 844 (950)
T ss_dssp TT------TCSSCSEEEEEESCTTSCCTTSCSCCEEEEESCGGGSCHHHHHHHHHHHHHTTCCSEEEEEECBGGGHHHHT
T ss_pred ch------hhcCCCceEEEECchHhCCcccCCeeEEEEeCchhhCChHHHHHHHHHHHHHcCCCEEEEEecCchhhhhhh
Confidence 11 023456899999999999998899999999999999998777777888999999999999999999999988
Q ss_pred hhccCccCCCCcchhhhccccccCCCCccccCHHHHHHHHHHHHHHcCcEEEEEeecCCCCCCCCccceeeeeecCCCCC
Q 002218 843 KSSSTIQEDDPDEKTQLQSCKFRNHDHKFEWTRDQFNCWATELAARHNYSVEFSGVGGSGDREPGFASQIAVFRSRTPPE 922 (952)
Q Consensus 843 ~L~~~ta~eYPde~~g~~~~~fRh~DHkFEWTReEFqsWae~La~q~GYsVefsGVG~~p~ge~G~aTQIAVFrRk~~~~ 922 (952)
.+...+...+|+.. ....+|+.+|+|+|++++|+.|+++++.++||.|++.|+|+.+.++.|++||||||+| ..+.
T Consensus 845 ~Lnp~tr~~dPd~~---~~~~fRh~DHrFEWTReEFr~Wae~LAer~GYsVefvGVGDg~ep~vG~~TQiAVFtR-~~~g 920 (950)
T 3htx_A 845 RSTPETQEENNSEP---QLPKFRNHDHKFEWTREQFNQWASKLGKRHNYSVEFSGVGGSGEVEPGFASQIAIFRR-EASS 920 (950)
T ss_dssp CC---------------CCSSCSCSSCSCCBCHHHHHHHHHHHHHHTTEEEEEEEESSCSSSTTCCSEEEEEEEE-SCC-
T ss_pred hccccccccccccc---ccccccccCcceeecHHHHHHHHHHHHHhcCcEEEEEccCCCCCCCCCCccEEEEEEE-CCCc
Confidence 65333332333321 3456899999999999999999999999999999999999988778999999999999 6666
Q ss_pred CcccccCCCCccceeEEEEecCCCC
Q 002218 923 EDDLLKDGDSAHHYKVIWEWDGNGL 947 (952)
Q Consensus 923 ~~~~~~~~~~~~~Yk~v~~w~~~~~ 947 (952)
.+.+.+.. ..|||++|||.++..
T Consensus 921 ~d~l~e~~--~~~~~~~W~w~~~~~ 943 (950)
T 3htx_A 921 VENVAESS--MQPYKVIWEWKKEDV 943 (950)
T ss_dssp ----CCCC--CCCSCEEEEEECC--
T ss_pred hhhcchhh--cchHHHhcccCCccc
Confidence 66666654 489999999988764
No 2
>3jwg_A HEN1, methyltransferase type 12; 1.90A {Clostridium thermocellum} PDB: 3jwi_A
Probab=99.96 E-value=5.4e-28 Score=241.50 Aligned_cols=202 Identities=37% Similarity=0.616 Sum_probs=167.7
Q ss_pred CchhHHHHHHHHHHHhhcCCCCEEEEEcCccchHHHHHhcCCCCCceEEEEeCChHHHHHHHHHHhhhhhcccccCCCCC
Q 002218 694 SPPLSKQRVEYALQHIKESCATTLVDFGCGSGSLLDSLLDYPTALEKIVGVDISQKSLSRAAKIIHSKLSKKLDAAVPCT 773 (952)
Q Consensus 694 ~PPL~~QR~efVldlL~~~k~krVLDIGCGeG~ll~~LAr~g~~~~qVVGVDISeemLe~ArkrLsa~la~~~~~l~Pr~ 773 (952)
..+++++|++++.+.+...++.+|||||||+|.++..+++.+ +..+|+|+|+|+.+++.|++++.... . +..
T Consensus 10 ~~~~~~~~~~~l~~~l~~~~~~~vLDiGcG~G~~~~~l~~~~-~~~~v~gvD~s~~~~~~a~~~~~~~~--~-----~~~ 81 (219)
T 3jwg_A 10 KLNLNQQRLGTVVAVLKSVNAKKVIDLGCGEGNLLSLLLKDK-SFEQITGVDVSYSVLERAKDRLKIDR--L-----PEM 81 (219)
T ss_dssp --CHHHHHHHHHHHHHHHTTCCEEEEETCTTCHHHHHHHTST-TCCEEEEEESCHHHHHHHHHHHTGGG--S-----CHH
T ss_pred CCcchHHHHHHHHHHHhhcCCCEEEEecCCCCHHHHHHHhcC-CCCEEEEEECCHHHHHHHHHHHHhhc--c-----ccc
Confidence 348999999999999988889999999999999999999876 34799999999999999998764210 0 000
Q ss_pred CCccEEEEEcCccccCCCCCCccEEEEccccccCChhHHHHHHHHHHHccCCCEEEEEecCCchhHHHHhhccCccCCCC
Q 002218 774 DVKSAVLFDGSITVFDSRLHGFDIGTCLEVIEHMEEDEASQFGNIVLSSFRPRILIVSTPNYEYNAILQKSSSTIQEDDP 853 (952)
Q Consensus 774 ~~~nVtf~qGDa~dLpf~d~sFDVVVcieVIEHL~dD~l~~L~eeI~RvLKPG~LIISTPN~efN~lf~~L~~~ta~eYP 853 (952)
...++++.++|+...+...++||+|+|..+++|++++....+.+++.++||||.+++++||.+++..+..+
T Consensus 82 ~~~~v~~~~~d~~~~~~~~~~fD~V~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~~i~~~~~~~~~~~~~~--------- 152 (219)
T 3jwg_A 82 QRKRISLFQSSLVYRDKRFSGYDAATVIEVIEHLDENRLQAFEKVLFEFTRPQTVIVSTPNKEYNFHYGNL--------- 152 (219)
T ss_dssp HHTTEEEEECCSSSCCGGGTTCSEEEEESCGGGCCHHHHHHHHHHHHTTTCCSEEEEEEEBGGGGGCCCCT---------
T ss_pred cCcceEEEeCcccccccccCCCCEEEEHHHHHhCCHHHHHHHHHHHHHhhCCCEEEEEccchhhhhhhccc---------
Confidence 11279999999988887788999999999999999777677778899999999889999998887655422
Q ss_pred cchhhhccccccCCCCccccCHHHHHHHHHHHHHHcCcEEEEEeecCCCCCCCCccceeeeeecCC
Q 002218 854 DEKTQLQSCKFRNHDHKFEWTRDQFNCWATELAARHNYSVEFSGVGGSGDREPGFASQIAVFRSRT 919 (952)
Q Consensus 854 de~~g~~~~~fRh~DHkFEWTReEFqsWae~La~q~GYsVefsGVG~~p~ge~G~aTQIAVFrRk~ 919 (952)
....+++.+|.++|++++|..|+++++.++||+|++.|+|..+. ..|+++||+||+|..
T Consensus 153 ------~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~Gf~v~~~~~g~~~~-~~g~~~qi~~~~~~~ 211 (219)
T 3jwg_A 153 ------FEGNLRHRDHRFEWTRKEFQTWAVKVAEKYGYSVRFLQIGEIDD-EFGSPTQMGVFTLGA 211 (219)
T ss_dssp -----------GGGCCTTSBCHHHHHHHHHHHHHHHTEEEEEEEESCCCT-TSCCSEEEEEEEECC
T ss_pred ------CcccccccCceeeecHHHHHHHHHHHHHHCCcEEEEEecCCccc-cCCCCeEEEEEeccC
Confidence 13457889999999999999999999999999999999998764 789999999999954
No 3
>3jwh_A HEN1; methyltransferase; HET: SAH; 2.20A {Anabaena variabilis} PDB: 3jwj_A
Probab=99.95 E-value=3.3e-27 Score=235.96 Aligned_cols=202 Identities=38% Similarity=0.673 Sum_probs=163.4
Q ss_pred Cc-hhHHHHHHHHHHHhhcCCCCEEEEEcCccchHHHHHhcCCCCCceEEEEeCChHHHHHHHHHHhhhhhcccccCCCC
Q 002218 694 SP-PLSKQRVEYALQHIKESCATTLVDFGCGSGSLLDSLLDYPTALEKIVGVDISQKSLSRAAKIIHSKLSKKLDAAVPC 772 (952)
Q Consensus 694 ~P-PL~~QR~efVldlL~~~k~krVLDIGCGeG~ll~~LAr~g~~~~qVVGVDISeemLe~ArkrLsa~la~~~~~l~Pr 772 (952)
.| +++.+|++++.+.+...++.+|||||||+|.++..+++.+ +..+|+|+|+|+.+++.|++++.... . +.
T Consensus 9 ~p~~~~~~~~~~l~~~l~~~~~~~vLDiGcG~G~~~~~l~~~~-~~~~v~gvD~s~~~~~~a~~~~~~~~--~-----~~ 80 (217)
T 3jwh_A 9 KPISLNQQRMNGVVAALKQSNARRVIDLGCGQGNLLKILLKDS-FFEQITGVDVSYRSLEIAQERLDRLR--L-----PR 80 (217)
T ss_dssp --CCHHHHHHHHHHHHHHHTTCCEEEEETCTTCHHHHHHHHCT-TCSEEEEEESCHHHHHHHHHHHTTCC--C-----CH
T ss_pred CCCCHHHHHHHHHHHHHHhcCCCEEEEeCCCCCHHHHHHHhhC-CCCEEEEEECCHHHHHHHHHHHHHhc--C-----Cc
Confidence 35 8999999999999988888999999999999999999876 34699999999999999998764210 0 00
Q ss_pred CCCccEEEEEcCccccCCCCCCccEEEEccccccCChhHHHHHHHHHHHccCCCEEEEEecCCchhHHHHhhccCccCCC
Q 002218 773 TDVKSAVLFDGSITVFDSRLHGFDIGTCLEVIEHMEEDEASQFGNIVLSSFRPRILIVSTPNYEYNAILQKSSSTIQEDD 852 (952)
Q Consensus 773 ~~~~nVtf~qGDa~dLpf~d~sFDVVVcieVIEHL~dD~l~~L~eeI~RvLKPG~LIISTPN~efN~lf~~L~~~ta~eY 852 (952)
....++++.++|+...+...++||+|++..+++|++++....+.+++.++||||.+++.+||.+++..+..+
T Consensus 81 ~~~~~v~~~~~d~~~~~~~~~~fD~v~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~li~~~~~~~~~~~~~~-------- 152 (217)
T 3jwh_A 81 NQWERLQLIQGALTYQDKRFHGYDAATVIEVIEHLDLSRLGAFERVLFEFAQPKIVIVTTPNIEYNVKFANL-------- 152 (217)
T ss_dssp HHHTTEEEEECCTTSCCGGGCSCSEEEEESCGGGCCHHHHHHHHHHHHTTTCCSEEEEEEEBHHHHHHTC----------
T ss_pred ccCcceEEEeCCcccccccCCCcCEEeeHHHHHcCCHHHHHHHHHHHHHHcCCCEEEEEccCcccchhhccc--------
Confidence 001279999999988877778999999999999999777677778899999999888999998887766432
Q ss_pred CcchhhhccccccCCCCccccCHHHHHHHHHHHHHHcCcEEEEEeecCCCCCCCCccceeeeeecCC
Q 002218 853 PDEKTQLQSCKFRNHDHKFEWTRDQFNCWATELAARHNYSVEFSGVGGSGDREPGFASQIAVFRSRT 919 (952)
Q Consensus 853 Pde~~g~~~~~fRh~DHkFEWTReEFqsWae~La~q~GYsVefsGVG~~p~ge~G~aTQIAVFrRk~ 919 (952)
....+++.+|.++|++++|..|+++++.++||.|++.|+|... +..|+++||++|..+.
T Consensus 153 -------~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~Gf~v~~~~~g~~~-~~~g~~~q~~~~~~~~ 211 (217)
T 3jwh_A 153 -------PAGKLRHKDHRFEWTRSQFQNWANKITERFAYNVQFQPIGEAD-PEVGSPTQMAVFIHRG 211 (217)
T ss_dssp ----------------CCSCBCHHHHHHHHHHHHHHSSEEEEECCCSCCC-SSSCCSEEEEEEEECC
T ss_pred -------ccccccccccccccCHHHHHHHHHHHHHHcCceEEEEecCCcc-CCCCchheeEeeeecc
Confidence 2345788999999999999999999999999999999999875 4789999999998754
No 4
>2p7i_A Hypothetical protein; putative methyltransferase, structural genomics, joint cente structural genomics, JCSG; 1.74A {Pectobacterium atrosepticum SCRI1043} SCOP: c.66.1.41 PDB: 2p7h_A
Probab=99.70 E-value=2.7e-16 Score=157.13 Aligned_cols=169 Identities=15% Similarity=0.117 Sum_probs=121.1
Q ss_pred HHHHHHHHHhhc-CCCCEEEEEcCccchHHHHHhcCCCCCceEEEEeCChHHHHHHHHHHhhhhhcccccCCCCCCCccE
Q 002218 700 QRVEYALQHIKE-SCATTLVDFGCGSGSLLDSLLDYPTALEKIVGVDISQKSLSRAAKIIHSKLSKKLDAAVPCTDVKSA 778 (952)
Q Consensus 700 QR~efVldlL~~-~k~krVLDIGCGeG~ll~~LAr~g~~~~qVVGVDISeemLe~ArkrLsa~la~~~~~l~Pr~~~~nV 778 (952)
.+++++.+.+.. .++.+|||||||+|.++..+++.+ .+|+|+|+|+.+++.|+++.. . ++
T Consensus 28 ~~~~~~~~~l~~~~~~~~vLDiGcG~G~~~~~l~~~~---~~v~gvD~s~~~~~~a~~~~~---------------~-~v 88 (250)
T 2p7i_A 28 VMHPFMVRAFTPFFRPGNLLELGSFKGDFTSRLQEHF---NDITCVEASEEAISHAQGRLK---------------D-GI 88 (250)
T ss_dssp THHHHHHHHHGGGCCSSCEEEESCTTSHHHHHHTTTC---SCEEEEESCHHHHHHHHHHSC---------------S-CE
T ss_pred hHHHHHHHHHHhhcCCCcEEEECCCCCHHHHHHHHhC---CcEEEEeCCHHHHHHHHHhhh---------------C-Ce
Confidence 355666666653 467899999999999999999987 589999999999999987531 1 79
Q ss_pred EEEEcCccccCCCCCCccEEEEccccccCChhHHHHHHHHHH-HccCCC-EEEEEecCCchhHHHHhhccCccCCCCcch
Q 002218 779 VLFDGSITVFDSRLHGFDIGTCLEVIEHMEEDEASQFGNIVL-SSFRPR-ILIVSTPNYEYNAILQKSSSTIQEDDPDEK 856 (952)
Q Consensus 779 tf~qGDa~dLpf~d~sFDVVVcieVIEHL~dD~l~~L~eeI~-RvLKPG-~LIISTPN~efN~lf~~L~~~ta~eYPde~ 856 (952)
++.++|+.++ +.+++||+|++.+++||++ +.. .+.+++. ++|||| .+++++||............. .++...
T Consensus 89 ~~~~~d~~~~-~~~~~fD~v~~~~~l~~~~-~~~-~~l~~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~---~~~~~~ 162 (250)
T 2p7i_A 89 TYIHSRFEDA-QLPRRYDNIVLTHVLEHID-DPV-ALLKRINDDWLAEGGRLFLVCPNANAVSRQIAVKMG---IISHNS 162 (250)
T ss_dssp EEEESCGGGC-CCSSCEEEEEEESCGGGCS-SHH-HHHHHHHHTTEEEEEEEEEEEECTTCHHHHHHHHTT---SSSSTT
T ss_pred EEEEccHHHc-CcCCcccEEEEhhHHHhhc-CHH-HHHHHHHHHhcCCCCEEEEEcCChHHHHHHHHHHcC---ccccch
Confidence 9999999888 4678899999999999998 443 4446799 999998 899999997654322211000 000000
Q ss_pred hhhccc-cccCCCCccccCHHHHHHHHHHHHHHcCcEEE-EEeecC
Q 002218 857 TQLQSC-KFRNHDHKFEWTRDQFNCWATELAARHNYSVE-FSGVGG 900 (952)
Q Consensus 857 ~g~~~~-~fRh~DHkFEWTReEFqsWae~La~q~GYsVe-fsGVG~ 900 (952)
... ......|...++++++.+ +++++||.+. ..++..
T Consensus 163 ---~~~~~~~~~~~~~~~~~~~~~~----~l~~~Gf~~~~~~~~~~ 201 (250)
T 2p7i_A 163 ---AVTEAEFAHGHRCTYALDTLER----DASRAGLQVTYRSGIFF 201 (250)
T ss_dssp ---CCCHHHHHTTCCCCCCHHHHHH----HHHHTTCEEEEEEEEEE
T ss_pred ---hcccccccccccccCCHHHHHH----HHHHCCCeEEEEeeeEe
Confidence 000 011345667799999995 5677899875 444444
No 5
>1vl5_A Unknown conserved protein BH2331; putative methyltransferase, structural genomics, joint cente structural genomics, JCSG; HET: MSE; 1.95A {Bacillus halodurans} SCOP: c.66.1.41
Probab=99.69 E-value=2.6e-16 Score=161.31 Aligned_cols=160 Identities=16% Similarity=0.233 Sum_probs=117.7
Q ss_pred HHHHHHHHhhcCCCCEEEEEcCccchHHHHHhcCCCCCceEEEEeCChHHHHHHHHHHhhhhhcccccCCCCCCCccEEE
Q 002218 701 RVEYALQHIKESCATTLVDFGCGSGSLLDSLLDYPTALEKIVGVDISQKSLSRAAKIIHSKLSKKLDAAVPCTDVKSAVL 780 (952)
Q Consensus 701 R~efVldlL~~~k~krVLDIGCGeG~ll~~LAr~g~~~~qVVGVDISeemLe~ArkrLsa~la~~~~~l~Pr~~~~nVtf 780 (952)
..+.+.+.+...++.+|||||||+|.++..|++.+ .+|+|+|+|+.|++.|++++.. .+..++++
T Consensus 25 ~~~~l~~~l~~~~~~~vLDiGcG~G~~~~~l~~~~---~~v~gvD~s~~~l~~a~~~~~~------------~~~~~v~~ 89 (260)
T 1vl5_A 25 DLAKLMQIAALKGNEEVLDVATGGGHVANAFAPFV---KKVVAFDLTEDILKVARAFIEG------------NGHQQVEY 89 (260)
T ss_dssp CHHHHHHHHTCCSCCEEEEETCTTCHHHHHHGGGS---SEEEEEESCHHHHHHHHHHHHH------------TTCCSEEE
T ss_pred HHHHHHHHhCCCCCCEEEEEeCCCCHHHHHHHHhC---CEEEEEeCCHHHHHHHHHHHHh------------cCCCceEE
Confidence 45567777777788999999999999999999987 5999999999999999887642 23347999
Q ss_pred EEcCccccCCCCCCccEEEEccccccCChhHHHHHHHHHHHccCCC-EEEEEecCCchhHHHHhhccCccCCCCcchhhh
Q 002218 781 FDGSITVFDSRLHGFDIGTCLEVIEHMEEDEASQFGNIVLSSFRPR-ILIVSTPNYEYNAILQKSSSTIQEDDPDEKTQL 859 (952)
Q Consensus 781 ~qGDa~dLpf~d~sFDVVVcieVIEHL~dD~l~~L~eeI~RvLKPG-~LIISTPN~efN~lf~~L~~~ta~eYPde~~g~ 859 (952)
.++|+.++++.+++||+|++..+++|++ +....+ +++.++|||| .+++.++....++.+.....
T Consensus 90 ~~~d~~~l~~~~~~fD~V~~~~~l~~~~-d~~~~l-~~~~r~LkpgG~l~~~~~~~~~~~~~~~~~~------------- 154 (260)
T 1vl5_A 90 VQGDAEQMPFTDERFHIVTCRIAAHHFP-NPASFV-SEAYRVLKKGGQLLLVDNSAPENDAFDVFYN------------- 154 (260)
T ss_dssp EECCC-CCCSCTTCEEEEEEESCGGGCS-CHHHHH-HHHHHHEEEEEEEEEEEEEBCSSHHHHHHHH-------------
T ss_pred EEecHHhCCCCCCCEEEEEEhhhhHhcC-CHHHHH-HHHHHHcCCCCEEEEEEcCCCCCHHHHHHHH-------------
Confidence 9999999998889999999999999998 443444 5799999998 77776554322222221100
Q ss_pred ccccccCCCCccccCHHHHHHHHHHHHHHcCcEEE
Q 002218 860 QSCKFRNHDHKFEWTRDQFNCWATELAARHNYSVE 894 (952)
Q Consensus 860 ~~~~fRh~DHkFEWTReEFqsWae~La~q~GYsVe 894 (952)
.....+...|...++.+++.+ ++.+.||.+.
T Consensus 155 ~~~~~~~~~~~~~~~~~~~~~----~l~~aGf~~~ 185 (260)
T 1vl5_A 155 YVEKERDYSHHRAWKKSDWLK----MLEEAGFELE 185 (260)
T ss_dssp HHHHHHCTTCCCCCBHHHHHH----HHHHHTCEEE
T ss_pred HHHHhcCccccCCCCHHHHHH----HHHHCCCeEE
Confidence 011123344556688888885 4566788764
No 6
>3ujc_A Phosphoethanolamine N-methyltransferase; parasite; HET: PC; 1.19A {Plasmodium falciparum} PDB: 3uj9_A* 3uj6_A* 3uj7_A* 3uj8_A* 3uja_A 3ujb_A* 4fgz_A* 3ujd_A*
Probab=99.66 E-value=3.2e-16 Score=159.12 Aligned_cols=169 Identities=11% Similarity=0.144 Sum_probs=124.5
Q ss_pred hcCCchhHHHHHHHHHHHhhcCCCCEEEEEcCccchHHHHHhcCCCCCceEEEEeCChHHHHHHHHHHhhhhhcccccCC
Q 002218 691 ALFSPPLSKQRVEYALQHIKESCATTLVDFGCGSGSLLDSLLDYPTALEKIVGVDISQKSLSRAAKIIHSKLSKKLDAAV 770 (952)
Q Consensus 691 ~~F~PPL~~QR~efVldlL~~~k~krVLDIGCGeG~ll~~LAr~g~~~~qVVGVDISeemLe~ArkrLsa~la~~~~~l~ 770 (952)
..+..+......+.+++.+...++.+|||||||+|.++..+++..+ .+|+|+|+|+.+++.|+++..
T Consensus 33 ~~~~~~~~~~~~~~~~~~~~~~~~~~vLdiG~G~G~~~~~l~~~~~--~~v~~vD~s~~~~~~a~~~~~----------- 99 (266)
T 3ujc_A 33 ENYISSGGLEATKKILSDIELNENSKVLDIGSGLGGGCMYINEKYG--AHTHGIDICSNIVNMANERVS----------- 99 (266)
T ss_dssp TTCCSTTHHHHHHHHTTTCCCCTTCEEEEETCTTSHHHHHHHHHHC--CEEEEEESCHHHHHHHHHTCC-----------
T ss_pred CCccccchHHHHHHHHHhcCCCCCCEEEEECCCCCHHHHHHHHHcC--CEEEEEeCCHHHHHHHHHHhh-----------
Confidence 3444555555566666666666788999999999999999998631 799999999999999987532
Q ss_pred CCCCCccEEEEEcCccccCCCCCCccEEEEccccccCChhHHHHHHHHHHHccCCC-EEEEEecCCch----hHHHHhhc
Q 002218 771 PCTDVKSAVLFDGSITVFDSRLHGFDIGTCLEVIEHMEEDEASQFGNIVLSSFRPR-ILIVSTPNYEY----NAILQKSS 845 (952)
Q Consensus 771 Pr~~~~nVtf~qGDa~dLpf~d~sFDVVVcieVIEHL~dD~l~~L~eeI~RvLKPG-~LIISTPN~ef----N~lf~~L~ 845 (952)
.. .++++.++|+.++++.+++||+|++..+++|++++....+.+++.++|||| .+++.+++... ...+..
T Consensus 100 --~~-~~~~~~~~d~~~~~~~~~~fD~v~~~~~l~~~~~~~~~~~l~~~~~~L~pgG~l~~~~~~~~~~~~~~~~~~~-- 174 (266)
T 3ujc_A 100 --GN-NKIIFEANDILTKEFPENNFDLIYSRDAILALSLENKNKLFQKCYKWLKPTGTLLITDYCATEKENWDDEFKE-- 174 (266)
T ss_dssp --SC-TTEEEEECCTTTCCCCTTCEEEEEEESCGGGSCHHHHHHHHHHHHHHEEEEEEEEEEEEEESCGGGCCHHHHH--
T ss_pred --cC-CCeEEEECccccCCCCCCcEEEEeHHHHHHhcChHHHHHHHHHHHHHcCCCCEEEEEEeccCCcccchHHHHH--
Confidence 11 589999999999988889999999999999997666667777899999998 78887765432 111111
Q ss_pred cCccCCCCcchhhhccccccCCCCccccCHHHHHHHHHHHHHHcCcEEE-EEeec
Q 002218 846 STIQEDDPDEKTQLQSCKFRNHDHKFEWTRDQFNCWATELAARHNYSVE-FSGVG 899 (952)
Q Consensus 846 ~~ta~eYPde~~g~~~~~fRh~DHkFEWTReEFqsWae~La~q~GYsVe-fsGVG 899 (952)
.....|...++.+++. .++.+.||.+. ...++
T Consensus 175 ------------------~~~~~~~~~~~~~~~~----~~l~~~Gf~~~~~~~~~ 207 (266)
T 3ujc_A 175 ------------------YVKQRKYTLITVEEYA----DILTACNFKNVVSKDLS 207 (266)
T ss_dssp ------------------HHHHHTCCCCCHHHHH----HHHHHTTCEEEEEEECH
T ss_pred ------------------HHhcCCCCCCCHHHHH----HHHHHcCCeEEEEEeCC
Confidence 1111233457888888 45677899763 44333
No 7
>3hnr_A Probable methyltransferase BT9727_4108; structural genomics, PSI-2, protein structure initiative; 2.80A {Bacillus thuringiensis serovarkonkukian}
Probab=99.66 E-value=1.1e-15 Score=151.93 Aligned_cols=165 Identities=14% Similarity=0.206 Sum_probs=119.6
Q ss_pred HHHHHHhhcCCCCEEEEEcCccchHHHHHhcCCCCCceEEEEeCChHHHHHHHHHHhhhhhcccccCCCCCCCccEEEEE
Q 002218 703 EYALQHIKESCATTLVDFGCGSGSLLDSLLDYPTALEKIVGVDISQKSLSRAAKIIHSKLSKKLDAAVPCTDVKSAVLFD 782 (952)
Q Consensus 703 efVldlL~~~k~krVLDIGCGeG~ll~~LAr~g~~~~qVVGVDISeemLe~ArkrLsa~la~~~~~l~Pr~~~~nVtf~q 782 (952)
..+++.+...++.+|||||||+|.++..+++.+ .+|+|+|+|+.+++.|++++. .++++.+
T Consensus 35 ~~~l~~~~~~~~~~vLDiGcG~G~~~~~l~~~~---~~v~~vD~s~~~~~~a~~~~~----------------~~~~~~~ 95 (220)
T 3hnr_A 35 EDILEDVVNKSFGNVLEFGVGTGNLTNKLLLAG---RTVYGIEPSREMRMIAKEKLP----------------KEFSITE 95 (220)
T ss_dssp HHHHHHHHHTCCSEEEEECCTTSHHHHHHHHTT---CEEEEECSCHHHHHHHHHHSC----------------TTCCEES
T ss_pred HHHHHHhhccCCCeEEEeCCCCCHHHHHHHhCC---CeEEEEeCCHHHHHHHHHhCC----------------CceEEEe
Confidence 345555555678899999999999999999986 799999999999999987531 3789999
Q ss_pred cCccccCCCCCCccEEEEccccccCChhHHHHHHHHHHHccCCC-EEEEEecCCchhHHHHhhccCc-cCCCCcchhhhc
Q 002218 783 GSITVFDSRLHGFDIGTCLEVIEHMEEDEASQFGNIVLSSFRPR-ILIVSTPNYEYNAILQKSSSTI-QEDDPDEKTQLQ 860 (952)
Q Consensus 783 GDa~dLpf~d~sFDVVVcieVIEHL~dD~l~~L~eeI~RvLKPG-~LIISTPN~efN~lf~~L~~~t-a~eYPde~~g~~ 860 (952)
+|+.++++. ++||+|++..+++|++++....+.+++.++|||| .+++.+|+......+....... ...|.
T Consensus 96 ~d~~~~~~~-~~fD~v~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~------- 167 (220)
T 3hnr_A 96 GDFLSFEVP-TSIDTIVSTYAFHHLTDDEKNVAIAKYSQLLNKGGKIVFADTIFADQDAYDKTVEAAKQRGFH------- 167 (220)
T ss_dssp CCSSSCCCC-SCCSEEEEESCGGGSCHHHHHHHHHHHHHHSCTTCEEEEEEECBSSHHHHHHHHHHHHHTTCH-------
T ss_pred CChhhcCCC-CCeEEEEECcchhcCChHHHHHHHHHHHHhcCCCCEEEEEeccccChHHHHHHHHHHHhCCCc-------
Confidence 999998877 8999999999999999766555667899999999 8888888765433222111000 00110
Q ss_pred cccccCCCCccccCHHHHHHHHHHHHHHcCcEEEEEeec
Q 002218 861 SCKFRNHDHKFEWTRDQFNCWATELAARHNYSVEFSGVG 899 (952)
Q Consensus 861 ~~~fRh~DHkFEWTReEFqsWae~La~q~GYsVefsGVG 899 (952)
.. .....+.+.++.+++. .+++++||++......
T Consensus 168 ~~-~~~~~~~~~~~~~~~~----~~l~~aGf~v~~~~~~ 201 (220)
T 3hnr_A 168 QL-ANDLQTEYYTRIPVMQ----TIFENNGFHVTFTRLN 201 (220)
T ss_dssp HH-HHHHHHSCCCBHHHHH----HHHHHTTEEEEEEECS
T ss_pred cc-hhhcchhhcCCHHHHH----HHHHHCCCEEEEeecc
Confidence 00 0011112335788887 5678899998876554
No 8
>3h2b_A SAM-dependent methyltransferase; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; HET: SAH; 2.00A {Corynebacterium glutamicum atcc 13032}
Probab=99.66 E-value=6.6e-16 Score=152.09 Aligned_cols=148 Identities=14% Similarity=0.127 Sum_probs=115.3
Q ss_pred HHHHHhhcCCCCEEEEEcCccchHHHHHhcCCCCCceEEEEeCChHHHHHHHHHHhhhhhcccccCCCCCCCccEEEEEc
Q 002218 704 YALQHIKESCATTLVDFGCGSGSLLDSLLDYPTALEKIVGVDISQKSLSRAAKIIHSKLSKKLDAAVPCTDVKSAVLFDG 783 (952)
Q Consensus 704 fVldlL~~~k~krVLDIGCGeG~ll~~LAr~g~~~~qVVGVDISeemLe~ArkrLsa~la~~~~~l~Pr~~~~nVtf~qG 783 (952)
++...+.. .+.+|||||||+|.++..|++.+ .+|+|+|+|+.|++.|+++. .++++.++
T Consensus 33 ~l~~~~~~-~~~~vLDiGcG~G~~~~~l~~~~---~~v~gvD~s~~~~~~a~~~~-----------------~~~~~~~~ 91 (203)
T 3h2b_A 33 LIEPWATG-VDGVILDVGSGTGRWTGHLASLG---HQIEGLEPATRLVELARQTH-----------------PSVTFHHG 91 (203)
T ss_dssp HHHHHHHH-CCSCEEEETCTTCHHHHHHHHTT---CCEEEECCCHHHHHHHHHHC-----------------TTSEEECC
T ss_pred HHHHHhcc-CCCeEEEecCCCCHHHHHHHhcC---CeEEEEeCCHHHHHHHHHhC-----------------CCCeEEeC
Confidence 33333333 37899999999999999999987 69999999999999998752 26899999
Q ss_pred CccccCCCCCCccEEEEccccccCChhHHHHHHHHHHHccCCC-EEEEEecCCchhHHHHhhccCccCCCCcchhhhccc
Q 002218 784 SITVFDSRLHGFDIGTCLEVIEHMEEDEASQFGNIVLSSFRPR-ILIVSTPNYEYNAILQKSSSTIQEDDPDEKTQLQSC 862 (952)
Q Consensus 784 Da~dLpf~d~sFDVVVcieVIEHL~dD~l~~L~eeI~RvLKPG-~LIISTPN~efN~lf~~L~~~ta~eYPde~~g~~~~ 862 (952)
|+.++++.++.||+|++..+++|++.+....+.+++.++|||| .+++++++.... .. .
T Consensus 92 d~~~~~~~~~~fD~v~~~~~l~~~~~~~~~~~l~~~~~~L~pgG~l~i~~~~~~~~---~~-----------------~- 150 (203)
T 3h2b_A 92 TITDLSDSPKRWAGLLAWYSLIHMGPGELPDALVALRMAVEDGGGLLMSFFSGPSL---EP-----------------M- 150 (203)
T ss_dssp CGGGGGGSCCCEEEEEEESSSTTCCTTTHHHHHHHHHHTEEEEEEEEEEEECCSSC---EE-----------------E-
T ss_pred cccccccCCCCeEEEEehhhHhcCCHHHHHHHHHHHHHHcCCCcEEEEEEccCCch---hh-----------------h-
Confidence 9999988889999999999999998655566667899999999 888888875431 00 0
Q ss_pred cccCCCCccccCHHHHHHHHHHHHHHcCcEEEEEee
Q 002218 863 KFRNHDHKFEWTRDQFNCWATELAARHNYSVEFSGV 898 (952)
Q Consensus 863 ~fRh~DHkFEWTReEFqsWae~La~q~GYsVefsGV 898 (952)
.....+...++.+++.+ ++.+.||.+.-...
T Consensus 151 -~~~~~~~~~~~~~~~~~----~l~~~Gf~~~~~~~ 181 (203)
T 3h2b_A 151 -YHPVATAYRWPLPELAQ----ALETAGFQVTSSHW 181 (203)
T ss_dssp -CCSSSCEEECCHHHHHH----HHHHTTEEEEEEEE
T ss_pred -hchhhhhccCCHHHHHH----HHHHCCCcEEEEEe
Confidence 11123556689999984 56788999865443
No 9
>3l8d_A Methyltransferase; structural genomics, PSI, nysgrc, protein structure initiative, NEW YORK SGX research center for STRU genomics; 1.70A {Bacillus thuringiensis}
Probab=99.65 E-value=2.7e-15 Score=150.92 Aligned_cols=156 Identities=16% Similarity=0.154 Sum_probs=117.4
Q ss_pred HHHHHHhhcCCCCEEEEEcCccchHHHHHhcCCCCCceEEEEeCChHHHHHHHHHHhhhhhcccccCCCCCCCccEEEEE
Q 002218 703 EYALQHIKESCATTLVDFGCGSGSLLDSLLDYPTALEKIVGVDISQKSLSRAAKIIHSKLSKKLDAAVPCTDVKSAVLFD 782 (952)
Q Consensus 703 efVldlL~~~k~krVLDIGCGeG~ll~~LAr~g~~~~qVVGVDISeemLe~ArkrLsa~la~~~~~l~Pr~~~~nVtf~q 782 (952)
+++.+.+. ++.+|||||||+|.++..+++.+ .+|+|+|+|+.+++.|+++. ...++++++
T Consensus 45 ~~l~~~~~--~~~~vLDiG~G~G~~~~~l~~~~---~~v~~vD~s~~~~~~a~~~~---------------~~~~~~~~~ 104 (242)
T 3l8d_A 45 PFFEQYVK--KEAEVLDVGCGDGYGTYKLSRTG---YKAVGVDISEVMIQKGKERG---------------EGPDLSFIK 104 (242)
T ss_dssp HHHHHHSC--TTCEEEEETCTTSHHHHHHHHTT---CEEEEEESCHHHHHHHHTTT---------------CBTTEEEEE
T ss_pred HHHHHHcC--CCCeEEEEcCCCCHHHHHHHHcC---CeEEEEECCHHHHHHHHhhc---------------ccCCceEEE
Confidence 34444433 67899999999999999999987 79999999999999997642 234899999
Q ss_pred cCccccCCCCCCccEEEEccccccCChhHHHHHHHHHHHccCCC-EEEEEecCCchhHHHHhhccCccCCCCcchhhhcc
Q 002218 783 GSITVFDSRLHGFDIGTCLEVIEHMEEDEASQFGNIVLSSFRPR-ILIVSTPNYEYNAILQKSSSTIQEDDPDEKTQLQS 861 (952)
Q Consensus 783 GDa~dLpf~d~sFDVVVcieVIEHL~dD~l~~L~eeI~RvLKPG-~LIISTPN~efN~lf~~L~~~ta~eYPde~~g~~~ 861 (952)
+|+.++++.+++||+|++..+++|++ +.... .+++.++|+|| .+++++++.......... .
T Consensus 105 ~d~~~~~~~~~~fD~v~~~~~l~~~~-~~~~~-l~~~~~~L~pgG~l~i~~~~~~~~~~~~~~----------------~ 166 (242)
T 3l8d_A 105 GDLSSLPFENEQFEAIMAINSLEWTE-EPLRA-LNEIKRVLKSDGYACIAILGPTAKPRENSY----------------P 166 (242)
T ss_dssp CBTTBCSSCTTCEEEEEEESCTTSSS-CHHHH-HHHHHHHEEEEEEEEEEEECTTCGGGGGGG----------------G
T ss_pred cchhcCCCCCCCccEEEEcChHhhcc-CHHHH-HHHHHHHhCCCeEEEEEEcCCcchhhhhhh----------------h
Confidence 99999998889999999999999997 44444 45799999998 888888765433222111 1
Q ss_pred ccccCCCCccccCHHHHHHHHHHHHHHcCcEEE-EEeecC
Q 002218 862 CKFRNHDHKFEWTRDQFNCWATELAARHNYSVE-FSGVGG 900 (952)
Q Consensus 862 ~~fRh~DHkFEWTReEFqsWae~La~q~GYsVe-fsGVG~ 900 (952)
..+....|...+++.++. .+++++||.+. ..++-.
T Consensus 167 ~~~~~~~~~~~~~~~~~~----~~l~~~Gf~~~~~~~~~~ 202 (242)
T 3l8d_A 167 RLYGKDVVCNTMMPWEFE----QLVKEQGFKVVDGIGVYK 202 (242)
T ss_dssp GGGTCCCSSCCCCHHHHH----HHHHHTTEEEEEEEEEEC
T ss_pred hhccccccccCCCHHHHH----HHHHHcCCEEEEeecccc
Confidence 123344566678999988 45678899874 344433
No 10
>3dtn_A Putative methyltransferase MM_2633; structural genomics, unknown function, PSI-2, protein structure initiative; 2.09A {Methanosarcina mazei}
Probab=99.65 E-value=2.8e-15 Score=150.71 Aligned_cols=174 Identities=14% Similarity=0.178 Sum_probs=122.3
Q ss_pred hhHHHHHHHHHHHhh-cCCCCEEEEEcCccchHHHHHhcCCCCCceEEEEeCChHHHHHHHHHHhhhhhcccccCCCCCC
Q 002218 696 PLSKQRVEYALQHIK-ESCATTLVDFGCGSGSLLDSLLDYPTALEKIVGVDISQKSLSRAAKIIHSKLSKKLDAAVPCTD 774 (952)
Q Consensus 696 PL~~QR~efVldlL~-~~k~krVLDIGCGeG~ll~~LAr~g~~~~qVVGVDISeemLe~ArkrLsa~la~~~~~l~Pr~~ 774 (952)
|.+...++.+.+.+. ..++.+|||||||+|.++..+++.. +..+|+|+|+|+.+++.|++++. .
T Consensus 26 ~~~~~~~~~~~~~~~~~~~~~~vLDiG~G~G~~~~~l~~~~-~~~~v~~vD~s~~~~~~a~~~~~--------------~ 90 (234)
T 3dtn_A 26 PCFDDFYGVSVSIASVDTENPDILDLGAGTGLLSAFLMEKY-PEATFTLVDMSEKMLEIAKNRFR--------------G 90 (234)
T ss_dssp TTHHHHHHHHHHTCCCSCSSCEEEEETCTTSHHHHHHHHHC-TTCEEEEEESCHHHHHHHHHHTC--------------S
T ss_pred cCHHHHHHHHHHHhhcCCCCCeEEEecCCCCHHHHHHHHhC-CCCeEEEEECCHHHHHHHHHhhc--------------c
Confidence 444555566666665 3467899999999999999999874 23799999999999999988642 1
Q ss_pred CccEEEEEcCccccCCCCCCccEEEEccccccCChhHHHHHHHHHHHccCCC-EEEEEecCCchhHHH--------Hhhc
Q 002218 775 VKSAVLFDGSITVFDSRLHGFDIGTCLEVIEHMEEDEASQFGNIVLSSFRPR-ILIVSTPNYEYNAIL--------QKSS 845 (952)
Q Consensus 775 ~~nVtf~qGDa~dLpf~d~sFDVVVcieVIEHL~dD~l~~L~eeI~RvLKPG-~LIISTPN~efN~lf--------~~L~ 845 (952)
..++++.++|+.++++. +.||+|++..+++|++++....+.+++.++|||| .+++.++.......+ ....
T Consensus 91 ~~~~~~~~~d~~~~~~~-~~fD~v~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~~ 169 (234)
T 3dtn_A 91 NLKVKYIEADYSKYDFE-EKYDMVVSALSIHHLEDEDKKELYKRSYSILKESGIFINADLVHGETAFIENLNKTIWRQYV 169 (234)
T ss_dssp CTTEEEEESCTTTCCCC-SCEEEEEEESCGGGSCHHHHHHHHHHHHHHEEEEEEEEEEEECBCSSHHHHHHHHHHHHHHH
T ss_pred CCCEEEEeCchhccCCC-CCceEEEEeCccccCCHHHHHHHHHHHHHhcCCCcEEEEEEecCCCChhhhhHHHHHHHHHH
Confidence 12899999999998877 8999999999999998766656777899999999 788877654322211 1110
Q ss_pred cCccCCCCcchhhhccccccCCCCccccCHHHHHHHHHHHHHHcCcEEE
Q 002218 846 STIQEDDPDEKTQLQSCKFRNHDHKFEWTRDQFNCWATELAARHNYSVE 894 (952)
Q Consensus 846 ~~ta~eYPde~~g~~~~~fRh~DHkFEWTReEFqsWae~La~q~GYsVe 894 (952)
. ...++.... ...+....|...++.+++. ++++++||.+.
T Consensus 170 ~--~~~~~~~~~---~~~~~~~~~~~~~~~~~~~----~ll~~aGF~~v 209 (234)
T 3dtn_A 170 E--NSGLTEEEI---AAGYERSKLDKDIEMNQQL----NWLKEAGFRDV 209 (234)
T ss_dssp H--TSSCCHHHH---HTTC----CCCCCBHHHHH----HHHHHTTCEEE
T ss_pred H--hcCCCHHHH---HHHHHhcccccccCHHHHH----HHHHHcCCCce
Confidence 0 001211110 1112333566778999888 45788899764
No 11
>1xxl_A YCGJ protein; structural genomics, protein structure initiative, PSI, NEW YORK SGX research center for structural genomics, nysgxrc; 2.10A {Bacillus subtilis} SCOP: c.66.1.41 PDB: 2glu_A*
Probab=99.64 E-value=1.6e-15 Score=154.57 Aligned_cols=157 Identities=15% Similarity=0.254 Sum_probs=117.8
Q ss_pred HHHHHhhcCCCCEEEEEcCccchHHHHHhcCCCCCceEEEEeCChHHHHHHHHHHhhhhhcccccCCCCCCCccEEEEEc
Q 002218 704 YALQHIKESCATTLVDFGCGSGSLLDSLLDYPTALEKIVGVDISQKSLSRAAKIIHSKLSKKLDAAVPCTDVKSAVLFDG 783 (952)
Q Consensus 704 fVldlL~~~k~krVLDIGCGeG~ll~~LAr~g~~~~qVVGVDISeemLe~ArkrLsa~la~~~~~l~Pr~~~~nVtf~qG 783 (952)
.+++.+...++.+|||||||+|.++..+++.+ .+|+|+|+|+.+++.|++++... +..++++.++
T Consensus 12 ~~~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~---~~v~~vD~s~~~~~~a~~~~~~~------------~~~~v~~~~~ 76 (239)
T 1xxl_A 12 LMIKTAECRAEHRVLDIGAGAGHTALAFSPYV---QECIGVDATKEMVEVASSFAQEK------------GVENVRFQQG 76 (239)
T ss_dssp HHHHHHTCCTTCEEEEESCTTSHHHHHHGGGS---SEEEEEESCHHHHHHHHHHHHHH------------TCCSEEEEEC
T ss_pred hHHHHhCcCCCCEEEEEccCcCHHHHHHHHhC---CEEEEEECCHHHHHHHHHHHHHc------------CCCCeEEEec
Confidence 45566677788999999999999999999887 69999999999999998876431 3347999999
Q ss_pred CccccCCCCCCccEEEEccccccCChhHHHHHHHHHHHccCCC-EEEEEecCCchhHHHHhhccCccCCCCcchhhhccc
Q 002218 784 SITVFDSRLHGFDIGTCLEVIEHMEEDEASQFGNIVLSSFRPR-ILIVSTPNYEYNAILQKSSSTIQEDDPDEKTQLQSC 862 (952)
Q Consensus 784 Da~dLpf~d~sFDVVVcieVIEHL~dD~l~~L~eeI~RvLKPG-~LIISTPN~efN~lf~~L~~~ta~eYPde~~g~~~~ 862 (952)
|+.++++.+++||+|++..+++|++ +.... .+++.++|||| .+++..++...+..+..+.. ...
T Consensus 77 d~~~~~~~~~~fD~v~~~~~l~~~~-~~~~~-l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~-------------~~~ 141 (239)
T 1xxl_A 77 TAESLPFPDDSFDIITCRYAAHHFS-DVRKA-VREVARVLKQDGRFLLVDHYAPEDPVLDEFVN-------------HLN 141 (239)
T ss_dssp BTTBCCSCTTCEEEEEEESCGGGCS-CHHHH-HHHHHHHEEEEEEEEEEEECBCSSHHHHHHHH-------------HHH
T ss_pred ccccCCCCCCcEEEEEECCchhhcc-CHHHH-HHHHHHHcCCCcEEEEEEcCCCCChhHHHHHH-------------HHH
Confidence 9999998889999999999999998 44344 45799999998 77776665432332222110 011
Q ss_pred cccCCCCccccCHHHHHHHHHHHHHHcCcEEE
Q 002218 863 KFRNHDHKFEWTRDQFNCWATELAARHNYSVE 894 (952)
Q Consensus 863 ~fRh~DHkFEWTReEFqsWae~La~q~GYsVe 894 (952)
..+...|...++.+++. .++.+.||.+.
T Consensus 142 ~~~~~~~~~~~~~~~~~----~ll~~aGf~~~ 169 (239)
T 1xxl_A 142 RLRDPSHVRESSLSEWQ----AMFSANQLAYQ 169 (239)
T ss_dssp HHHCTTCCCCCBHHHHH----HHHHHTTEEEE
T ss_pred HhccccccCCCCHHHHH----HHHHHCCCcEE
Confidence 12334566678888888 45677899764
No 12
>4htf_A S-adenosylmethionine-dependent methyltransferase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; HET: MSE SAM; 1.60A {Escherichia coli}
Probab=99.64 E-value=3.8e-15 Score=154.90 Aligned_cols=163 Identities=15% Similarity=0.122 Sum_probs=114.8
Q ss_pred CCCEEEEEcCccchHHHHHhcCCCCCceEEEEeCChHHHHHHHHHHhhhhhcccccCCCCCCCccEEEEEcCccccC-CC
Q 002218 713 CATTLVDFGCGSGSLLDSLLDYPTALEKIVGVDISQKSLSRAAKIIHSKLSKKLDAAVPCTDVKSAVLFDGSITVFD-SR 791 (952)
Q Consensus 713 k~krVLDIGCGeG~ll~~LAr~g~~~~qVVGVDISeemLe~ArkrLsa~la~~~~~l~Pr~~~~nVtf~qGDa~dLp-f~ 791 (952)
++.+|||||||+|.++..+++.+ .+|+|+|+|+.+++.|++++... ....+++++++|+.+++ +.
T Consensus 68 ~~~~vLDiGcG~G~~~~~l~~~~---~~v~gvD~s~~~~~~a~~~~~~~-----------~~~~~v~~~~~d~~~~~~~~ 133 (285)
T 4htf_A 68 QKLRVLDAGGGEGQTAIKMAERG---HQVILCDLSAQMIDRAKQAAEAK-----------GVSDNMQFIHCAAQDVASHL 133 (285)
T ss_dssp SCCEEEEETCTTCHHHHHHHHTT---CEEEEEESCHHHHHHHHHHHHC------------CCGGGEEEEESCGGGTGGGC
T ss_pred CCCEEEEeCCcchHHHHHHHHCC---CEEEEEECCHHHHHHHHHHHHhc-----------CCCcceEEEEcCHHHhhhhc
Confidence 36799999999999999999986 79999999999999999876421 12258999999999987 66
Q ss_pred CCCccEEEEccccccCChhHHHHHHHHHHHccCCC-EEEEEecCCchhHHHHhhccCccCCCCcchhhhccccccCCCCc
Q 002218 792 LHGFDIGTCLEVIEHMEEDEASQFGNIVLSSFRPR-ILIVSTPNYEYNAILQKSSSTIQEDDPDEKTQLQSCKFRNHDHK 870 (952)
Q Consensus 792 d~sFDVVVcieVIEHL~dD~l~~L~eeI~RvLKPG-~LIISTPN~efN~lf~~L~~~ta~eYPde~~g~~~~~fRh~DHk 870 (952)
+++||+|++..+++|++ +... +.+++.++|||| .+++.+++...........+ .+..-.............|.
T Consensus 134 ~~~fD~v~~~~~l~~~~-~~~~-~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~ 207 (285)
T 4htf_A 134 ETPVDLILFHAVLEWVA-DPRS-VLQTLWSVLRPGGVLSLMFYNAHGLLMHNMVAG----NFDYVQAGMPKKKKRTLSPD 207 (285)
T ss_dssp SSCEEEEEEESCGGGCS-CHHH-HHHHHHHTEEEEEEEEEEEEBHHHHHHHHHHTT----CHHHHHTTCCCC----CCCS
T ss_pred CCCceEEEECchhhccc-CHHH-HHHHHHHHcCCCeEEEEEEeCCchHHHHHHHhc----CHHHHhhhccccccccCCCC
Confidence 78999999999999998 4434 446799999999 88888887543221111100 00000000001112334556
Q ss_pred cccCHHHHHHHHHHHHHHcCcEEE-EEeec
Q 002218 871 FEWTRDQFNCWATELAARHNYSVE-FSGVG 899 (952)
Q Consensus 871 FEWTReEFqsWae~La~q~GYsVe-fsGVG 899 (952)
..++++++.. +++++||.+. ..++.
T Consensus 208 ~~~~~~~l~~----~l~~aGf~v~~~~~~~ 233 (285)
T 4htf_A 208 YPRDPTQVYL----WLEEAGWQIMGKTGVR 233 (285)
T ss_dssp CCBCHHHHHH----HHHHTTCEEEEEEEES
T ss_pred CCCCHHHHHH----HHHHCCCceeeeeeEE
Confidence 6789999995 5678899884 55554
No 13
>3ou2_A SAM-dependent methyltransferase; O-methyltransferase, SAH; HET: SAH; 1.50A {Streptomyces luridus} PDB: 3ou6_A* 3ou7_A*
Probab=99.64 E-value=2.6e-15 Score=148.07 Aligned_cols=164 Identities=13% Similarity=0.196 Sum_probs=115.3
Q ss_pred HHHHHHhh-cCCCCEEEEEcCccchHHHHHhcCCCCCceEEEEeCChHHHHHHHHHHhhhhhcccccCCCCCCCccEEEE
Q 002218 703 EYALQHIK-ESCATTLVDFGCGSGSLLDSLLDYPTALEKIVGVDISQKSLSRAAKIIHSKLSKKLDAAVPCTDVKSAVLF 781 (952)
Q Consensus 703 efVldlL~-~~k~krVLDIGCGeG~ll~~LAr~g~~~~qVVGVDISeemLe~ArkrLsa~la~~~~~l~Pr~~~~nVtf~ 781 (952)
..+.+.+. ..++.+|||||||+|.++..+++.+ .+|+|+|+|+.+++.|++ . +..++++.
T Consensus 35 ~~~~~~l~~~~~~~~vLdiG~G~G~~~~~l~~~~---~~v~~~D~s~~~~~~a~~--~--------------~~~~~~~~ 95 (218)
T 3ou2_A 35 PAALERLRAGNIRGDVLELASGTGYWTRHLSGLA---DRVTALDGSAEMIAEAGR--H--------------GLDNVEFR 95 (218)
T ss_dssp HHHHHHHTTTTSCSEEEEESCTTSHHHHHHHHHS---SEEEEEESCHHHHHHHGG--G--------------CCTTEEEE
T ss_pred HHHHHHHhcCCCCCeEEEECCCCCHHHHHHHhcC---CeEEEEeCCHHHHHHHHh--c--------------CCCCeEEE
Confidence 34555554 3456799999999999999999886 799999999999999965 1 23479999
Q ss_pred EcCccccCCCCCCccEEEEccccccCChhHHHHHHHHHHHccCCC-EEEEEecCCchhHHHHhhccCccCCCCcchhhhc
Q 002218 782 DGSITVFDSRLHGFDIGTCLEVIEHMEEDEASQFGNIVLSSFRPR-ILIVSTPNYEYNAILQKSSSTIQEDDPDEKTQLQ 860 (952)
Q Consensus 782 qGDa~dLpf~d~sFDVVVcieVIEHL~dD~l~~L~eeI~RvLKPG-~LIISTPN~efN~lf~~L~~~ta~eYPde~~g~~ 860 (952)
++|+.++ +..++||+|++..+++|++++....+.+++.++|||| .+++.+++..... +....... ..+. .
T Consensus 96 ~~d~~~~-~~~~~~D~v~~~~~l~~~~~~~~~~~l~~~~~~L~pgG~l~~~~~~~~~~~-~~~~~~~~--~~~~-----~ 166 (218)
T 3ou2_A 96 QQDLFDW-TPDRQWDAVFFAHWLAHVPDDRFEAFWESVRSAVAPGGVVEFVDVTDHERR-LEQQDDSE--PEVA-----V 166 (218)
T ss_dssp ECCTTSC-CCSSCEEEEEEESCGGGSCHHHHHHHHHHHHHHEEEEEEEEEEEECCCC---------------CE-----E
T ss_pred ecccccC-CCCCceeEEEEechhhcCCHHHHHHHHHHHHHHcCCCeEEEEEeCCCCccc-cchhhhcc--cccc-----e
Confidence 9999988 6778999999999999999765667778899999998 8888888763222 21111000 0000 0
Q ss_pred cccccCCCC----ccccCHHHHHHHHHHHHHHcCcEEEEEee
Q 002218 861 SCKFRNHDH----KFEWTRDQFNCWATELAARHNYSVEFSGV 898 (952)
Q Consensus 861 ~~~fRh~DH----kFEWTReEFqsWae~La~q~GYsVefsGV 898 (952)
...+....| ...++++++. .+++++||.|+..-.
T Consensus 167 ~~~~~~~~~~~~~~~~~~~~~~~----~~l~~aGf~v~~~~~ 204 (218)
T 3ou2_A 167 RRTLQDGRSFRIVKVFRSPAELT----ERLTALGWSCSVDEV 204 (218)
T ss_dssp EEECTTSCEEEEECCCCCHHHHH----HHHHHTTEEEEEEEE
T ss_pred eeecCCcchhhHhhcCCCHHHHH----HHHHHCCCEEEeeec
Confidence 011112222 2357999998 457788999875544
No 14
>3dli_A Methyltransferase; PSI-II, NYSGXRC, structural genomics, protein structure initiative; 2.46A {Archaeoglobus fulgidus}
Probab=99.64 E-value=1.5e-15 Score=154.21 Aligned_cols=136 Identities=14% Similarity=0.215 Sum_probs=109.4
Q ss_pred CCCEEEEEcCccchHHHHHhcCCCCCceEEEEeCChHHHHHHHHHHhhhhhcccccCCCCCCCccEEEEEcCcccc--CC
Q 002218 713 CATTLVDFGCGSGSLLDSLLDYPTALEKIVGVDISQKSLSRAAKIIHSKLSKKLDAAVPCTDVKSAVLFDGSITVF--DS 790 (952)
Q Consensus 713 k~krVLDIGCGeG~ll~~LAr~g~~~~qVVGVDISeemLe~ArkrLsa~la~~~~~l~Pr~~~~nVtf~qGDa~dL--pf 790 (952)
++.+|||||||+|.++..+++.+ .+|+|+|+|+.+++.|++ ++++.++|+.+. ++
T Consensus 41 ~~~~vLDiGcG~G~~~~~l~~~~---~~v~gvD~s~~~~~~a~~--------------------~~~~~~~d~~~~~~~~ 97 (240)
T 3dli_A 41 GCRRVLDIGCGRGEFLELCKEEG---IESIGVDINEDMIKFCEG--------------------KFNVVKSDAIEYLKSL 97 (240)
T ss_dssp TCSCEEEETCTTTHHHHHHHHHT---CCEEEECSCHHHHHHHHT--------------------TSEEECSCHHHHHHTS
T ss_pred CCCeEEEEeCCCCHHHHHHHhCC---CcEEEEECCHHHHHHHHh--------------------hcceeeccHHHHhhhc
Confidence 56899999999999999999886 689999999999999864 267888998875 67
Q ss_pred CCCCccEEEEccccccCChhHHHHHHHHHHHccCCC-EEEEEecCCchhHHHHhhccCccCCCCcchhhhccccccCCCC
Q 002218 791 RLHGFDIGTCLEVIEHMEEDEASQFGNIVLSSFRPR-ILIVSTPNYEYNAILQKSSSTIQEDDPDEKTQLQSCKFRNHDH 869 (952)
Q Consensus 791 ~d~sFDVVVcieVIEHL~dD~l~~L~eeI~RvLKPG-~LIISTPN~efN~lf~~L~~~ta~eYPde~~g~~~~~fRh~DH 869 (952)
.+++||+|++..+++|++++....+.+++.++|||| .+++.+|+......+... +..+.|
T Consensus 98 ~~~~fD~i~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~-------------------~~~~~~ 158 (240)
T 3dli_A 98 PDKYLDGVMISHFVEHLDPERLFELLSLCYSKMKYSSYIVIESPNPTSLYSLINF-------------------YIDPTH 158 (240)
T ss_dssp CTTCBSEEEEESCGGGSCGGGHHHHHHHHHHHBCTTCCEEEEEECTTSHHHHHHH-------------------TTSTTC
T ss_pred CCCCeeEEEECCchhhCCcHHHHHHHHHHHHHcCCCcEEEEEeCCcchhHHHHHH-------------------hcCccc
Confidence 788999999999999999766667778899999998 889999986533222211 223457
Q ss_pred ccccCHHHHHHHHHHHHHHcCcEEE
Q 002218 870 KFEWTRDQFNCWATELAARHNYSVE 894 (952)
Q Consensus 870 kFEWTReEFqsWae~La~q~GYsVe 894 (952)
...++++++.+ ++.++||.+.
T Consensus 159 ~~~~~~~~l~~----~l~~aGf~~~ 179 (240)
T 3dli_A 159 KKPVHPETLKF----ILEYLGFRDV 179 (240)
T ss_dssp CSCCCHHHHHH----HHHHHTCEEE
T ss_pred cccCCHHHHHH----HHHHCCCeEE
Confidence 77789999885 4667799874
No 15
>3e23_A Uncharacterized protein RPA2492; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; HET: SAM; 1.60A {Rhodopseudomonas palustris}
Probab=99.63 E-value=3.5e-15 Score=148.08 Aligned_cols=158 Identities=12% Similarity=0.140 Sum_probs=116.0
Q ss_pred CCCEEEEEcCccchHHHHHhcCCCCCceEEEEeCChHHHHHHHHHHhhhhhcccccCCCCCCCccEEEEEcCccccCCCC
Q 002218 713 CATTLVDFGCGSGSLLDSLLDYPTALEKIVGVDISQKSLSRAAKIIHSKLSKKLDAAVPCTDVKSAVLFDGSITVFDSRL 792 (952)
Q Consensus 713 k~krVLDIGCGeG~ll~~LAr~g~~~~qVVGVDISeemLe~ArkrLsa~la~~~~~l~Pr~~~~nVtf~qGDa~dLpf~d 792 (952)
++.+|||||||+|.++..+++.+ .+|+|+|+|+.+++.|++++ ++.+..+|+.+++ .+
T Consensus 43 ~~~~vLDiGcG~G~~~~~l~~~~---~~v~~vD~s~~~~~~a~~~~------------------~~~~~~~d~~~~~-~~ 100 (211)
T 3e23_A 43 AGAKILELGCGAGYQAEAMLAAG---FDVDATDGSPELAAEASRRL------------------GRPVRTMLFHQLD-AI 100 (211)
T ss_dssp TTCEEEESSCTTSHHHHHHHHTT---CEEEEEESCHHHHHHHHHHH------------------TSCCEECCGGGCC-CC
T ss_pred CCCcEEEECCCCCHHHHHHHHcC---CeEEEECCCHHHHHHHHHhc------------------CCceEEeeeccCC-CC
Confidence 56799999999999999999986 79999999999999998764 3567789998888 67
Q ss_pred CCccEEEEccccccCChhHHHHHHHHHHHccCCC-EEEEEecCCchhHHHHhhccCccCCCCcchhhhccccccCCCCcc
Q 002218 793 HGFDIGTCLEVIEHMEEDEASQFGNIVLSSFRPR-ILIVSTPNYEYNAILQKSSSTIQEDDPDEKTQLQSCKFRNHDHKF 871 (952)
Q Consensus 793 ~sFDVVVcieVIEHL~dD~l~~L~eeI~RvLKPG-~LIISTPN~efN~lf~~L~~~ta~eYPde~~g~~~~~fRh~DHkF 871 (952)
+.||+|++..+++|++.+....+.+++.++|||| .+++++++.... .......+..
T Consensus 101 ~~fD~v~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~-----------------------~~~~~~~~~~ 157 (211)
T 3e23_A 101 DAYDAVWAHACLLHVPRDELADVLKLIWRALKPGGLFYASYKSGEGE-----------------------GRDKLARYYN 157 (211)
T ss_dssp SCEEEEEECSCGGGSCHHHHHHHHHHHHHHEEEEEEEEEEEECCSSC-----------------------EECTTSCEEC
T ss_pred CcEEEEEecCchhhcCHHHHHHHHHHHHHhcCCCcEEEEEEcCCCcc-----------------------cccccchhcc
Confidence 8999999999999999767777778899999999 778877654311 0011123445
Q ss_pred ccCHHHHHHHHHHHHHHcC-cEEEEEeecCCCCCCCCccceeeeeecCC
Q 002218 872 EWTRDQFNCWATELAARHN-YSVEFSGVGGSGDREPGFASQIAVFRSRT 919 (952)
Q Consensus 872 EWTReEFqsWae~La~q~G-YsVefsGVG~~p~ge~G~aTQIAVFrRk~ 919 (952)
.++++++.+ ++++.| |.+.-.-.............++.+..++.
T Consensus 158 ~~~~~~~~~----~l~~aG~f~~~~~~~~~~~~~~~~~~~wl~~~~~~~ 202 (211)
T 3e23_A 158 YPSEEWLRA----RYAEAGTWASVAVESSEGKGFDQELAQFLHVSVRKP 202 (211)
T ss_dssp CCCHHHHHH----HHHHHCCCSEEEEEEEEEECTTSCEEEEEEEEEECC
T ss_pred CCCHHHHHH----HHHhCCCcEEEEEEeccCCCCCCCCceEEEEEEecC
Confidence 689999984 566789 97743222111111223345666666643
No 16
>4gek_A TRNA (CMO5U34)-methyltransferase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc, rossmann fold; HET: GEK; 1.50A {Escherichia coli} PDB: 1im8_A*
Probab=99.63 E-value=3.3e-15 Score=157.15 Aligned_cols=127 Identities=16% Similarity=0.174 Sum_probs=100.8
Q ss_pred hhHHHHHHHHHHHhhc--CCCCEEEEEcCccchHHHHHhcCCC-CCceEEEEeCChHHHHHHHHHHhhhhhcccccCCCC
Q 002218 696 PLSKQRVEYALQHIKE--SCATTLVDFGCGSGSLLDSLLDYPT-ALEKIVGVDISQKSLSRAAKIIHSKLSKKLDAAVPC 772 (952)
Q Consensus 696 PL~~QR~efVldlL~~--~k~krVLDIGCGeG~ll~~LAr~g~-~~~qVVGVDISeemLe~ArkrLsa~la~~~~~l~Pr 772 (952)
|.|.+..+.+..++.. .++.+|||||||+|.++..|++... +..+|+|||+|+.||+.|++++...
T Consensus 51 P~Y~~~~~~i~~l~~~~~~~~~~vLDlGcGtG~~~~~la~~~~~~~~~v~gvD~s~~ml~~A~~~~~~~----------- 119 (261)
T 4gek_A 51 PGYSNIISMIGMLAERFVQPGTQVYDLGCSLGAATLSVRRNIHHDNCKIIAIDNSPAMIERCRRHIDAY----------- 119 (261)
T ss_dssp TTHHHHHHHHHHHHHHHCCTTCEEEEETCTTTHHHHHHHHTCCSSSCEEEEEESCHHHHHHHHHHHHTS-----------
T ss_pred CCHHHHHHHHHHHHHHhCCCCCEEEEEeCCCCHHHHHHHHhcCCCCCEEEEEECCHHHHHHHHHHHHhh-----------
Confidence 5566555555555442 4678999999999999999987632 2369999999999999999887531
Q ss_pred CCCccEEEEEcCccccCCCCCCccEEEEccccccCChhHHHHHHHHHHHccCCC-EEEEEecCC
Q 002218 773 TDVKSAVLFDGSITVFDSRLHGFDIGTCLEVIEHMEEDEASQFGNIVLSSFRPR-ILIVSTPNY 835 (952)
Q Consensus 773 ~~~~nVtf~qGDa~dLpf~d~sFDVVVcieVIEHL~dD~l~~L~eeI~RvLKPG-~LIISTPN~ 835 (952)
....+|+++++|+.++++ ..||+|++..+++|+++++...+.++++++|||| .++++.+..
T Consensus 120 ~~~~~v~~~~~D~~~~~~--~~~d~v~~~~~l~~~~~~~~~~~l~~i~~~LkpGG~lii~e~~~ 181 (261)
T 4gek_A 120 KAPTPVDVIEGDIRDIAI--ENASMVVLNFTLQFLEPSERQALLDKIYQGLNPGGALVLSEKFS 181 (261)
T ss_dssp CCSSCEEEEESCTTTCCC--CSEEEEEEESCGGGSCHHHHHHHHHHHHHHEEEEEEEEEEEEBC
T ss_pred ccCceEEEeecccccccc--cccccceeeeeeeecCchhHhHHHHHHHHHcCCCcEEEEEeccC
Confidence 233489999999998875 4699999999999999777777778899999999 777776543
No 17
>1y8c_A S-adenosylmethionine-dependent methyltransferase; structural genomics, protein structure initiative, PSI; 2.50A {Clostridium acetobutylicum} SCOP: c.66.1.43
Probab=99.63 E-value=5.7e-15 Score=147.94 Aligned_cols=124 Identities=21% Similarity=0.316 Sum_probs=101.3
Q ss_pred hhHHHHHHHHHHHhhcC--CCCEEEEEcCccchHHHHHhcCCCCCceEEEEeCChHHHHHHHHHHhhhhhcccccCCCCC
Q 002218 696 PLSKQRVEYALQHIKES--CATTLVDFGCGSGSLLDSLLDYPTALEKIVGVDISQKSLSRAAKIIHSKLSKKLDAAVPCT 773 (952)
Q Consensus 696 PL~~QR~efVldlL~~~--k~krVLDIGCGeG~ll~~LAr~g~~~~qVVGVDISeemLe~ArkrLsa~la~~~~~l~Pr~ 773 (952)
..+....+++.+.+... ++.+|||+|||+|.++..+++.+ .+++|+|+|+.|++.|++++.. .
T Consensus 18 ~~~~~~~~~~~~~l~~~~~~~~~vLdiG~G~G~~~~~l~~~~---~~~~~~D~s~~~~~~a~~~~~~------------~ 82 (246)
T 1y8c_A 18 VDYKKWSDFIIEKCVENNLVFDDYLDLACGTGNLTENLCPKF---KNTWAVDLSQEMLSEAENKFRS------------Q 82 (246)
T ss_dssp CCHHHHHHHHHHHHHTTTCCTTEEEEETCTTSTTHHHHGGGS---SEEEEECSCHHHHHHHHHHHHH------------T
T ss_pred ccHHHHHHHHHHHHHHhCCCCCeEEEeCCCCCHHHHHHHHCC---CcEEEEECCHHHHHHHHHHHhh------------c
Confidence 44566667777777654 67899999999999999999887 7899999999999999887642 1
Q ss_pred CCccEEEEEcCccccCCCCCCccEEEEcc-ccccCCh-hHHHHHHHHHHHccCCC-EEEEEecCCc
Q 002218 774 DVKSAVLFDGSITVFDSRLHGFDIGTCLE-VIEHMEE-DEASQFGNIVLSSFRPR-ILIVSTPNYE 836 (952)
Q Consensus 774 ~~~nVtf~qGDa~dLpf~d~sFDVVVcie-VIEHL~d-D~l~~L~eeI~RvLKPG-~LIISTPN~e 836 (952)
+ .++++.++|+.++++. +.||+|++.. +++|++. +....+.+++.++|||| .+++.+++..
T Consensus 83 ~-~~~~~~~~d~~~~~~~-~~fD~v~~~~~~l~~~~~~~~~~~~l~~~~~~L~pgG~l~~~~~~~~ 146 (246)
T 1y8c_A 83 G-LKPRLACQDISNLNIN-RKFDLITCCLDSTNYIIDSDDLKKYFKAVSNHLKEGGVFIFDINSYY 146 (246)
T ss_dssp T-CCCEEECCCGGGCCCS-CCEEEEEECTTGGGGCCSHHHHHHHHHHHHTTEEEEEEEEEEEECHH
T ss_pred C-CCeEEEecccccCCcc-CCceEEEEcCccccccCCHHHHHHHHHHHHHhcCCCcEEEEEecCHH
Confidence 1 2789999999998876 8899999998 9999952 34456667899999998 8888888753
No 18
>1nkv_A Hypothetical protein YJHP; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.90A {Escherichia coli} SCOP: c.66.1.21
Probab=99.63 E-value=1.4e-15 Score=154.49 Aligned_cols=165 Identities=13% Similarity=0.157 Sum_probs=120.3
Q ss_pred CCchhHHHHHHHHHHHhhcCCCCEEEEEcCccchHHHHHhcCCCCCceEEEEeCChHHHHHHHHHHhhhhhcccccCCCC
Q 002218 693 FSPPLSKQRVEYALQHIKESCATTLVDFGCGSGSLLDSLLDYPTALEKIVGVDISQKSLSRAAKIIHSKLSKKLDAAVPC 772 (952)
Q Consensus 693 F~PPL~~QR~efVldlL~~~k~krVLDIGCGeG~ll~~LAr~g~~~~qVVGVDISeemLe~ArkrLsa~la~~~~~l~Pr 772 (952)
+..|.+....+.+.+.+...++.+|||||||+|.++..+++..+ .+|+|+|+|+.+++.|++++...
T Consensus 16 ~~~~~~~~~~~~l~~~~~~~~~~~VLDiGcG~G~~~~~la~~~~--~~v~gvD~s~~~l~~a~~~~~~~----------- 82 (256)
T 1nkv_A 16 IHNPFTEEKYATLGRVLRMKPGTRILDLGSGSGEMLCTWARDHG--ITGTGIDMSSLFTAQAKRRAEEL----------- 82 (256)
T ss_dssp SSSSCCHHHHHHHHHHTCCCTTCEEEEETCTTCHHHHHHHHHTC--CEEEEEESCHHHHHHHHHHHHHT-----------
T ss_pred ccCCCCHHHHHHHHHhcCCCCCCEEEEECCCCCHHHHHHHHhcC--CeEEEEeCCHHHHHHHHHHHHhc-----------
Confidence 34466677777888888777889999999999999999987642 68999999999999998876431
Q ss_pred CCCccEEEEEcCccccCCCCCCccEEEEccccccCChhHHHHHHHHHHHccCCC-EEEEEecCCchhHHHHhhccCccCC
Q 002218 773 TDVKSAVLFDGSITVFDSRLHGFDIGTCLEVIEHMEEDEASQFGNIVLSSFRPR-ILIVSTPNYEYNAILQKSSSTIQED 851 (952)
Q Consensus 773 ~~~~nVtf~qGDa~dLpf~d~sFDVVVcieVIEHL~dD~l~~L~eeI~RvLKPG-~LIISTPN~efN~lf~~L~~~ta~e 851 (952)
....++++.++|+.++++ +++||+|+|..+++|++ +....+ +++.++|||| .+++.+|+.........+
T Consensus 83 ~~~~~v~~~~~d~~~~~~-~~~fD~V~~~~~~~~~~-~~~~~l-~~~~r~LkpgG~l~~~~~~~~~~~~~~~~------- 152 (256)
T 1nkv_A 83 GVSERVHFIHNDAAGYVA-NEKCDVAACVGATWIAG-GFAGAE-ELLAQSLKPGGIMLIGEPYWRQLPATEEI------- 152 (256)
T ss_dssp TCTTTEEEEESCCTTCCC-SSCEEEEEEESCGGGTS-SSHHHH-HHHTTSEEEEEEEEEEEEEETTCCSSHHH-------
T ss_pred CCCcceEEEECChHhCCc-CCCCCEEEECCChHhcC-CHHHHH-HHHHHHcCCCeEEEEecCcccCCCChHHH-------
Confidence 122479999999999887 78999999999999998 443444 5799999999 788877753211100000
Q ss_pred CCcchhhhccccccCCCCccccCHHHHHHHHHHHHHHcCcEE
Q 002218 852 DPDEKTQLQSCKFRNHDHKFEWTRDQFNCWATELAARHNYSV 893 (952)
Q Consensus 852 YPde~~g~~~~~fRh~DHkFEWTReEFqsWae~La~q~GYsV 893 (952)
........|...++..++.+ ++.+.||.+
T Consensus 153 ---------~~~~~~~~~~~~~~~~~~~~----~l~~aGf~~ 181 (256)
T 1nkv_A 153 ---------AQACGVSSTSDFLTLPGLVG----AFDDLGYDV 181 (256)
T ss_dssp ---------HHTTTCSCGGGSCCHHHHHH----HHHTTTBCC
T ss_pred ---------HHHHhcccccccCCHHHHHH----HHHHCCCee
Confidence 00011223445578888874 466788876
No 19
>1pjz_A Thiopurine S-methyltransferase; polymorphism, S-adenosylmethionine, drug metabolism; NMR {Pseudomonas syringae PV} SCOP: c.66.1.36
Probab=99.63 E-value=1.5e-15 Score=152.30 Aligned_cols=122 Identities=9% Similarity=0.024 Sum_probs=91.9
Q ss_pred hhcCCCCEEEEEcCccchHHHHHhcCCCCCceEEEEeCChHHHHHHHHHHhhhhhcccccCC-CCCCCccEEEEEcCccc
Q 002218 709 IKESCATTLVDFGCGSGSLLDSLLDYPTALEKIVGVDISQKSLSRAAKIIHSKLSKKLDAAV-PCTDVKSAVLFDGSITV 787 (952)
Q Consensus 709 L~~~k~krVLDIGCGeG~ll~~LAr~g~~~~qVVGVDISeemLe~ArkrLsa~la~~~~~l~-Pr~~~~nVtf~qGDa~d 787 (952)
+...++.+|||+|||+|.++..|++.+ .+|+|||+|+.||+.|+++........ .... ......+++++++|+.+
T Consensus 18 l~~~~~~~vLD~GCG~G~~~~~la~~g---~~V~gvD~S~~~l~~a~~~~~~~~~~~-~~~~~~~~~~~~v~~~~~d~~~ 93 (203)
T 1pjz_A 18 LNVVPGARVLVPLCGKSQDMSWLSGQG---YHVVGAELSEAAVERYFTERGEQPHIT-SQGDFKVYAAPGIEIWCGDFFA 93 (203)
T ss_dssp HCCCTTCEEEETTTCCSHHHHHHHHHC---CEEEEEEECHHHHHHHHHHHCSCSEEE-EETTEEEEECSSSEEEEECCSS
T ss_pred cccCCCCEEEEeCCCCcHhHHHHHHCC---CeEEEEeCCHHHHHHHHHHccCCcccc-cccccccccCCccEEEECcccc
Confidence 334467899999999999999999987 799999999999999987642100000 0000 00012479999999999
Q ss_pred cCCCC-CCccEEEEccccccCChhHHHHHHHHHHHccCCC-EEEEEecC
Q 002218 788 FDSRL-HGFDIGTCLEVIEHMEEDEASQFGNIVLSSFRPR-ILIVSTPN 834 (952)
Q Consensus 788 Lpf~d-~sFDVVVcieVIEHL~dD~l~~L~eeI~RvLKPG-~LIISTPN 834 (952)
+++.+ ++||+|++..+++|++++....+.+++.++|||| .+++.+.+
T Consensus 94 l~~~~~~~fD~v~~~~~l~~l~~~~~~~~l~~~~r~LkpgG~~~l~~~~ 142 (203)
T 1pjz_A 94 LTARDIGHCAAFYDRAAMIALPADMRERYVQHLEALMPQACSGLLITLE 142 (203)
T ss_dssp STHHHHHSEEEEEEESCGGGSCHHHHHHHHHHHHHHSCSEEEEEEEEES
T ss_pred CCcccCCCEEEEEECcchhhCCHHHHHHHHHHHHHHcCCCcEEEEEEEe
Confidence 98765 7999999999999999776667778899999999 54555543
No 20
>1xtp_A LMAJ004091AAA; SGPP, structural genomics, PSI, protein structure initiative dependent methyltransferase; HET: SAI; 1.94A {Leishmania major} SCOP: c.66.1.42
Probab=99.62 E-value=2.8e-15 Score=151.93 Aligned_cols=148 Identities=10% Similarity=0.099 Sum_probs=113.6
Q ss_pred HHHhhcCCCCEEEEEcCccchHHHHHhcCCCCCceEEEEeCChHHHHHHHHHHhhhhhcccccCCCCCCCccEEEEEcCc
Q 002218 706 LQHIKESCATTLVDFGCGSGSLLDSLLDYPTALEKIVGVDISQKSLSRAAKIIHSKLSKKLDAAVPCTDVKSAVLFDGSI 785 (952)
Q Consensus 706 ldlL~~~k~krVLDIGCGeG~ll~~LAr~g~~~~qVVGVDISeemLe~ArkrLsa~la~~~~~l~Pr~~~~nVtf~qGDa 785 (952)
++.+...++.+|||||||+|.++..|++.+ ..+|+|+|+|+.+++.|++++.. ..++++.++|+
T Consensus 86 l~~l~~~~~~~vLDiG~G~G~~~~~l~~~~--~~~v~~vD~s~~~~~~a~~~~~~--------------~~~~~~~~~d~ 149 (254)
T 1xtp_A 86 IASLPGHGTSRALDCGAGIGRITKNLLTKL--YATTDLLEPVKHMLEEAKRELAG--------------MPVGKFILASM 149 (254)
T ss_dssp HHTSTTCCCSEEEEETCTTTHHHHHTHHHH--CSEEEEEESCHHHHHHHHHHTTT--------------SSEEEEEESCG
T ss_pred HHhhcccCCCEEEEECCCcCHHHHHHHHhh--cCEEEEEeCCHHHHHHHHHHhcc--------------CCceEEEEccH
Confidence 333444467899999999999999998775 26799999999999999886531 14799999999
Q ss_pred cccCCCCCCccEEEEccccccCChhHHHHHHHHHHHccCCC-EEEEEecCCchhHHHHhhccCccCCCCcchhhhccccc
Q 002218 786 TVFDSRLHGFDIGTCLEVIEHMEEDEASQFGNIVLSSFRPR-ILIVSTPNYEYNAILQKSSSTIQEDDPDEKTQLQSCKF 864 (952)
Q Consensus 786 ~dLpf~d~sFDVVVcieVIEHL~dD~l~~L~eeI~RvLKPG-~LIISTPN~efN~lf~~L~~~ta~eYPde~~g~~~~~f 864 (952)
.++++.++.||+|++..+++|++++....+.+++.++|||| .+++.++..... . ...
T Consensus 150 ~~~~~~~~~fD~v~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~------------~----------~~~ 207 (254)
T 1xtp_A 150 ETATLPPNTYDLIVIQWTAIYLTDADFVKFFKHCQQALTPNGYIFFKENCSTGD------------R----------FLV 207 (254)
T ss_dssp GGCCCCSSCEEEEEEESCGGGSCHHHHHHHHHHHHHHEEEEEEEEEEEEBC--C------------C----------EEE
T ss_pred HHCCCCCCCeEEEEEcchhhhCCHHHHHHHHHHHHHhcCCCeEEEEEecCCCcc------------c----------cee
Confidence 99988888999999999999998666666777899999998 788877643211 0 012
Q ss_pred cCCCCccccCHHHHHHHHHHHHHHcCcEEEE
Q 002218 865 RNHDHKFEWTRDQFNCWATELAARHNYSVEF 895 (952)
Q Consensus 865 Rh~DHkFEWTReEFqsWae~La~q~GYsVef 895 (952)
...++.+.++++++.+ +++++||.+.-
T Consensus 208 ~~~~~~~~~~~~~~~~----~l~~aGf~~~~ 234 (254)
T 1xtp_A 208 DKEDSSLTRSDIHYKR----LFNESGVRVVK 234 (254)
T ss_dssp ETTTTEEEBCHHHHHH----HHHHHTCCEEE
T ss_pred cccCCcccCCHHHHHH----HHHHCCCEEEE
Confidence 2334566789999985 56678998754
No 21
>2ex4_A Adrenal gland protein AD-003; methyltransferase, structural genomics, SGC, structural genomics consortium; HET: SAH; 1.75A {Homo sapiens} SCOP: c.66.1.42
Probab=99.60 E-value=1.8e-14 Score=146.31 Aligned_cols=142 Identities=18% Similarity=0.201 Sum_probs=110.8
Q ss_pred CCCEEEEEcCccchHHHHHhcCCCCCceEEEEeCChHHHHHHHHHHhhhhhcccccCCCCCCCccEEEEEcCccccCCCC
Q 002218 713 CATTLVDFGCGSGSLLDSLLDYPTALEKIVGVDISQKSLSRAAKIIHSKLSKKLDAAVPCTDVKSAVLFDGSITVFDSRL 792 (952)
Q Consensus 713 k~krVLDIGCGeG~ll~~LAr~g~~~~qVVGVDISeemLe~ArkrLsa~la~~~~~l~Pr~~~~nVtf~qGDa~dLpf~d 792 (952)
++.+|||||||+|.++..|++.+. .+|+|+|+|+.+++.|++++... +..+++++++|+.++++..
T Consensus 79 ~~~~vLDiGcG~G~~~~~l~~~~~--~~v~~vD~s~~~~~~a~~~~~~~------------~~~~~~~~~~d~~~~~~~~ 144 (241)
T 2ex4_A 79 GTSCALDCGAGIGRITKRLLLPLF--REVDMVDITEDFLVQAKTYLGEE------------GKRVRNYFCCGLQDFTPEP 144 (241)
T ss_dssp CCSEEEEETCTTTHHHHHTTTTTC--SEEEEEESCHHHHHHHHHHTGGG------------GGGEEEEEECCGGGCCCCS
T ss_pred CCCEEEEECCCCCHHHHHHHHhcC--CEEEEEeCCHHHHHHHHHHhhhc------------CCceEEEEEcChhhcCCCC
Confidence 478999999999999999988762 69999999999999998875421 1347899999999988877
Q ss_pred CCccEEEEccccccCChhHHHHHHHHHHHccCCC-EEEEEecCCchhHHHHhhccCccCCCCcchhhhccccccCCCCcc
Q 002218 793 HGFDIGTCLEVIEHMEEDEASQFGNIVLSSFRPR-ILIVSTPNYEYNAILQKSSSTIQEDDPDEKTQLQSCKFRNHDHKF 871 (952)
Q Consensus 793 ~sFDVVVcieVIEHL~dD~l~~L~eeI~RvLKPG-~LIISTPN~efN~lf~~L~~~ta~eYPde~~g~~~~~fRh~DHkF 871 (952)
+.||+|++..+++|++++....+.+++.++|||| .+++.++.... ... +...++.+
T Consensus 145 ~~fD~v~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~~----~~~-------------------~~~~~~~~ 201 (241)
T 2ex4_A 145 DSYDVIWIQWVIGHLTDQHLAEFLRRCKGSLRPNGIIVIKDNMAQE----GVI-------------------LDDVDSSV 201 (241)
T ss_dssp SCEEEEEEESCGGGSCHHHHHHHHHHHHHHEEEEEEEEEEEEEBSS----SEE-------------------EETTTTEE
T ss_pred CCEEEEEEcchhhhCCHHHHHHHHHHHHHhcCCCeEEEEEEccCCC----cce-------------------ecccCCcc
Confidence 8999999999999999766667777899999999 77787775432 000 11223444
Q ss_pred ccCHHHHHHHHHHHHHHcCcEEEE
Q 002218 872 EWTRDQFNCWATELAARHNYSVEF 895 (952)
Q Consensus 872 EWTReEFqsWae~La~q~GYsVef 895 (952)
.++.+++.+ ++.+.||.+.-
T Consensus 202 ~~~~~~~~~----~l~~aGf~~~~ 221 (241)
T 2ex4_A 202 CRDLDVVRR----IICSAGLSLLA 221 (241)
T ss_dssp EEBHHHHHH----HHHHTTCCEEE
T ss_pred cCCHHHHHH----HHHHcCCeEEE
Confidence 568888884 56778998754
No 22
>3dh0_A SAM dependent methyltransferase; cystal structure, PSI-2, NYSGXRC, structural genomics, protein structure initiative; HET: SAM; 2.72A {Aquifex aeolicus}
Probab=99.60 E-value=8.3e-15 Score=145.57 Aligned_cols=154 Identities=14% Similarity=0.113 Sum_probs=116.7
Q ss_pred HHHHHHhhcCCCCEEEEEcCccchHHHHHhcCCCCCceEEEEeCChHHHHHHHHHHhhhhhcccccCCCCCCCccEEEEE
Q 002218 703 EYALQHIKESCATTLVDFGCGSGSLLDSLLDYPTALEKIVGVDISQKSLSRAAKIIHSKLSKKLDAAVPCTDVKSAVLFD 782 (952)
Q Consensus 703 efVldlL~~~k~krVLDIGCGeG~ll~~LAr~g~~~~qVVGVDISeemLe~ArkrLsa~la~~~~~l~Pr~~~~nVtf~q 782 (952)
+.+.+.+...++.+|||+|||+|.++..+++.+++..+|+|+|+|+.+++.|++++... +..++++.+
T Consensus 27 ~~~~~~~~~~~~~~vLDiG~G~G~~~~~l~~~~~~~~~v~~vD~s~~~~~~a~~~~~~~------------~~~~~~~~~ 94 (219)
T 3dh0_A 27 EKVLKEFGLKEGMTVLDVGTGAGFYLPYLSKMVGEKGKVYAIDVQEEMVNYAWEKVNKL------------GLKNVEVLK 94 (219)
T ss_dssp HHHHHHHTCCTTCEEEESSCTTCTTHHHHHHHHTTTCEEEEEESCHHHHHHHHHHHHHH------------TCTTEEEEE
T ss_pred HHHHHHhCCCCCCEEEEEecCCCHHHHHHHHHhCCCcEEEEEECCHHHHHHHHHHHHHc------------CCCcEEEEe
Confidence 34556666667889999999999999999987534479999999999999999876431 334799999
Q ss_pred cCccccCCCCCCccEEEEccccccCChhHHHHHHHHHHHccCCC-EEEEEecCCchhHHHHhhccCccCCCCcchhhhcc
Q 002218 783 GSITVFDSRLHGFDIGTCLEVIEHMEEDEASQFGNIVLSSFRPR-ILIVSTPNYEYNAILQKSSSTIQEDDPDEKTQLQS 861 (952)
Q Consensus 783 GDa~dLpf~d~sFDVVVcieVIEHL~dD~l~~L~eeI~RvLKPG-~LIISTPN~efN~lf~~L~~~ta~eYPde~~g~~~ 861 (952)
+|+.++++.+++||+|++..+++|++ +.. .+.+++.++|||| .+++.+++....
T Consensus 95 ~d~~~~~~~~~~fD~v~~~~~l~~~~-~~~-~~l~~~~~~LkpgG~l~i~~~~~~~~----------------------- 149 (219)
T 3dh0_A 95 SEENKIPLPDNTVDFIFMAFTFHELS-EPL-KFLEELKRVAKPFAYLAIIDWKKEER----------------------- 149 (219)
T ss_dssp CBTTBCSSCSSCEEEEEEESCGGGCS-SHH-HHHHHHHHHEEEEEEEEEEEECSSCC-----------------------
T ss_pred cccccCCCCCCCeeEEEeehhhhhcC-CHH-HHHHHHHHHhCCCeEEEEEEeccccc-----------------------
Confidence 99999988888999999999999997 443 4446799999999 777776553211
Q ss_pred ccccCCCCccccCHHHHHHHHHHHHHHcCcEEE-EEeec
Q 002218 862 CKFRNHDHKFEWTRDQFNCWATELAARHNYSVE-FSGVG 899 (952)
Q Consensus 862 ~~fRh~DHkFEWTReEFqsWae~La~q~GYsVe-fsGVG 899 (952)
.....+...++.+++. .++++.||.+. ...++
T Consensus 150 --~~~~~~~~~~~~~~~~----~~l~~~Gf~~~~~~~~~ 182 (219)
T 3dh0_A 150 --DKGPPPEEVYSEWEVG----LILEDAGIRVGRVVEVG 182 (219)
T ss_dssp --SSSCCGGGSCCHHHHH----HHHHHTTCEEEEEEEET
T ss_pred --ccCCchhcccCHHHHH----HHHHHCCCEEEEEEeeC
Confidence 1112233457888888 45778899864 44443
No 23
>3dlc_A Putative S-adenosyl-L-methionine-dependent methyltransferase; structural genomics, joint center for structural genomics; HET: MSE SAM; 1.15A {Methanococcus maripaludis}
Probab=99.59 E-value=5.6e-15 Score=145.12 Aligned_cols=128 Identities=16% Similarity=0.092 Sum_probs=102.4
Q ss_pred CCchhHHHHHHHHHHHhhcCCCCEEEEEcCccchHHHHHhcCCCCCceEEEEeCChHHHHHHHHHHhhhhhcccccCCCC
Q 002218 693 FSPPLSKQRVEYALQHIKESCATTLVDFGCGSGSLLDSLLDYPTALEKIVGVDISQKSLSRAAKIIHSKLSKKLDAAVPC 772 (952)
Q Consensus 693 F~PPL~~QR~efVldlL~~~k~krVLDIGCGeG~ll~~LAr~g~~~~qVVGVDISeemLe~ArkrLsa~la~~~~~l~Pr 772 (952)
++.|++....+.+.+.+...+. +|||+|||+|.++..+++.. ..+|+|+|+|+.+++.|++++...
T Consensus 24 ~~~~~~~~~~~~~~~~~~~~~~-~vLdiG~G~G~~~~~l~~~~--~~~v~~~D~s~~~~~~a~~~~~~~----------- 89 (219)
T 3dlc_A 24 LFAPIYPIIAENIINRFGITAG-TCIDIGSGPGALSIALAKQS--DFSIRALDFSKHMNEIALKNIADA----------- 89 (219)
T ss_dssp TTTTHHHHHHHHHHHHHCCCEE-EEEEETCTTSHHHHHHHHHS--EEEEEEEESCHHHHHHHHHHHHHT-----------
T ss_pred hhccccHHHHHHHHHhcCCCCC-EEEEECCCCCHHHHHHHHcC--CCeEEEEECCHHHHHHHHHHHHhc-----------
Confidence 4556677666777776654444 99999999999999999873 279999999999999999876531
Q ss_pred CCCccEEEEEcCccccCCCCCCccEEEEccccccCChhHHHHHHHHHHHccCCC-EEEEEecCCc
Q 002218 773 TDVKSAVLFDGSITVFDSRLHGFDIGTCLEVIEHMEEDEASQFGNIVLSSFRPR-ILIVSTPNYE 836 (952)
Q Consensus 773 ~~~~nVtf~qGDa~dLpf~d~sFDVVVcieVIEHL~dD~l~~L~eeI~RvLKPG-~LIISTPN~e 836 (952)
....++++.++|+.++++.++.||+|++..+++|++ +.... .+++.++|||| .+++.++...
T Consensus 90 ~~~~~~~~~~~d~~~~~~~~~~~D~v~~~~~l~~~~-~~~~~-l~~~~~~L~pgG~l~~~~~~~~ 152 (219)
T 3dlc_A 90 NLNDRIQIVQGDVHNIPIEDNYADLIVSRGSVFFWE-DVATA-FREIYRILKSGGKTYIGGGFGN 152 (219)
T ss_dssp TCTTTEEEEECBTTBCSSCTTCEEEEEEESCGGGCS-CHHHH-HHHHHHHEEEEEEEEEEECCSS
T ss_pred cccCceEEEEcCHHHCCCCcccccEEEECchHhhcc-CHHHH-HHHHHHhCCCCCEEEEEeccCc
Confidence 123479999999999998889999999999999996 44344 45799999999 7777766544
No 24
>3bus_A REBM, methyltransferase; rebeccamycin synthesis; HET: SAH; 2.65A {Lechevalieria aerocolonigenes}
Probab=99.59 E-value=1.7e-14 Score=148.32 Aligned_cols=166 Identities=12% Similarity=0.113 Sum_probs=117.3
Q ss_pred HHHHHHHHhhcCCCCEEEEEcCccchHHHHHhcCCCCCceEEEEeCChHHHHHHHHHHhhhhhcccccCCCCCCCccEEE
Q 002218 701 RVEYALQHIKESCATTLVDFGCGSGSLLDSLLDYPTALEKIVGVDISQKSLSRAAKIIHSKLSKKLDAAVPCTDVKSAVL 780 (952)
Q Consensus 701 R~efVldlL~~~k~krVLDIGCGeG~ll~~LAr~g~~~~qVVGVDISeemLe~ArkrLsa~la~~~~~l~Pr~~~~nVtf 780 (952)
..+.+.+.+...++.+|||||||+|.++..+++..+ .+|+|+|+|+.+++.|++++... ....++++
T Consensus 49 ~~~~l~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~~--~~v~gvD~s~~~~~~a~~~~~~~-----------~~~~~~~~ 115 (273)
T 3bus_A 49 LTDEMIALLDVRSGDRVLDVGCGIGKPAVRLATARD--VRVTGISISRPQVNQANARATAA-----------GLANRVTF 115 (273)
T ss_dssp HHHHHHHHSCCCTTCEEEEESCTTSHHHHHHHHHSC--CEEEEEESCHHHHHHHHHHHHHT-----------TCTTTEEE
T ss_pred HHHHHHHhcCCCCCCEEEEeCCCCCHHHHHHHHhcC--CEEEEEeCCHHHHHHHHHHHHhc-----------CCCcceEE
Confidence 344556666656788999999999999999987532 79999999999999998876431 12247999
Q ss_pred EEcCccccCCCCCCccEEEEccccccCChhHHHHHHHHHHHccCCC-EEEEEecCCch--hHHHHhhccCccCCCCcchh
Q 002218 781 FDGSITVFDSRLHGFDIGTCLEVIEHMEEDEASQFGNIVLSSFRPR-ILIVSTPNYEY--NAILQKSSSTIQEDDPDEKT 857 (952)
Q Consensus 781 ~qGDa~dLpf~d~sFDVVVcieVIEHL~dD~l~~L~eeI~RvLKPG-~LIISTPN~ef--N~lf~~L~~~ta~eYPde~~ 857 (952)
.++|+.++++.+++||+|++.++++|+++ .. .+.+++.++|||| .+++.+++... .........
T Consensus 116 ~~~d~~~~~~~~~~fD~v~~~~~l~~~~~-~~-~~l~~~~~~L~pgG~l~i~~~~~~~~~~~~~~~~~~----------- 182 (273)
T 3bus_A 116 SYADAMDLPFEDASFDAVWALESLHHMPD-RG-RALREMARVLRPGGTVAIADFVLLAPVEGAKKEAVD----------- 182 (273)
T ss_dssp EECCTTSCCSCTTCEEEEEEESCTTTSSC-HH-HHHHHHHTTEEEEEEEEEEEEEESSCCCHHHHHHHH-----------
T ss_pred EECccccCCCCCCCccEEEEechhhhCCC-HH-HHHHHHHHHcCCCeEEEEEEeeccCCCChhHHHHHH-----------
Confidence 99999999988889999999999999984 43 4446799999999 77777765321 111000000
Q ss_pred hhccccccCCCCccccCHHHHHHHHHHHHHHcCcEEE-EEeecC
Q 002218 858 QLQSCKFRNHDHKFEWTRDQFNCWATELAARHNYSVE-FSGVGG 900 (952)
Q Consensus 858 g~~~~~fRh~DHkFEWTReEFqsWae~La~q~GYsVe-fsGVG~ 900 (952)
... ....|...++.+++.+ ++++.||.+. ...++.
T Consensus 183 --~~~--~~~~~~~~~~~~~~~~----~l~~aGf~~~~~~~~~~ 218 (273)
T 3bus_A 183 --AFR--AGGGVLSLGGIDEYES----DVRQAELVVTSTVDISA 218 (273)
T ss_dssp --HHH--HHHTCCCCCCHHHHHH----HHHHTTCEEEEEEECHH
T ss_pred --HHH--hhcCccCCCCHHHHHH----HHHHcCCeEEEEEECcH
Confidence 000 1112345688888884 5677899874 444443
No 25
>3g5l_A Putative S-adenosylmethionine dependent methyltransferase; structural genomics, PSI-2, protein structure initiative; 2.35A {Listeria monocytogenes str}
Probab=99.59 E-value=1.2e-14 Score=148.06 Aligned_cols=114 Identities=14% Similarity=0.181 Sum_probs=95.6
Q ss_pred HHHHHHhhcCCCCEEEEEcCccchHHHHHhcCCCCCceEEEEeCChHHHHHHHHHHhhhhhcccccCCCCCCCccEEEEE
Q 002218 703 EYALQHIKESCATTLVDFGCGSGSLLDSLLDYPTALEKIVGVDISQKSLSRAAKIIHSKLSKKLDAAVPCTDVKSAVLFD 782 (952)
Q Consensus 703 efVldlL~~~k~krVLDIGCGeG~ll~~LAr~g~~~~qVVGVDISeemLe~ArkrLsa~la~~~~~l~Pr~~~~nVtf~q 782 (952)
..+.+.+...++.+|||||||+|.++..+++.+. .+|+|+|+|+.+++.|+++.. ..++++.+
T Consensus 34 ~~l~~~~~~~~~~~vLD~GcG~G~~~~~l~~~~~--~~v~~vD~s~~~~~~a~~~~~---------------~~~~~~~~ 96 (253)
T 3g5l_A 34 HELKKMLPDFNQKTVLDLGCGFGWHCIYAAEHGA--KKVLGIDLSERMLTEAKRKTT---------------SPVVCYEQ 96 (253)
T ss_dssp HHHHTTCCCCTTCEEEEETCTTCHHHHHHHHTTC--SEEEEEESCHHHHHHHHHHCC---------------CTTEEEEE
T ss_pred HHHHHhhhccCCCEEEEECCCCCHHHHHHHHcCC--CEEEEEECCHHHHHHHHHhhc---------------cCCeEEEE
Confidence 3455666666789999999999999999999873 499999999999999987631 34899999
Q ss_pred cCccccCCCCCCccEEEEccccccCChhHHHHHHHHHHHccCCC-EEEEEecCC
Q 002218 783 GSITVFDSRLHGFDIGTCLEVIEHMEEDEASQFGNIVLSSFRPR-ILIVSTPNY 835 (952)
Q Consensus 783 GDa~dLpf~d~sFDVVVcieVIEHL~dD~l~~L~eeI~RvLKPG-~LIISTPN~ 835 (952)
+|+.++++.+++||+|++..+++|++ +.... .+++.++|||| .+++++++.
T Consensus 97 ~d~~~~~~~~~~fD~v~~~~~l~~~~-~~~~~-l~~~~~~LkpgG~l~~~~~~~ 148 (253)
T 3g5l_A 97 KAIEDIAIEPDAYNVVLSSLALHYIA-SFDDI-CKKVYINLKSSGSFIFSVEHP 148 (253)
T ss_dssp CCGGGCCCCTTCEEEEEEESCGGGCS-CHHHH-HHHHHHHEEEEEEEEEEEECH
T ss_pred cchhhCCCCCCCeEEEEEchhhhhhh-hHHHH-HHHHHHHcCCCcEEEEEeCCC
Confidence 99999988889999999999999996 44444 45799999999 888888764
No 26
>2xvm_A Tellurite resistance protein TEHB; antibiotic resistance, transferase; HET: SAH; 1.48A {Escherichia coli} PDB: 2xva_A* 4dq0_A* 2i6g_A*
Probab=99.59 E-value=1.2e-14 Score=141.36 Aligned_cols=114 Identities=13% Similarity=0.121 Sum_probs=95.2
Q ss_pred HHHHHhhcCCCCEEEEEcCccchHHHHHhcCCCCCceEEEEeCChHHHHHHHHHHhhhhhcccccCCCCCCCccEEEEEc
Q 002218 704 YALQHIKESCATTLVDFGCGSGSLLDSLLDYPTALEKIVGVDISQKSLSRAAKIIHSKLSKKLDAAVPCTDVKSAVLFDG 783 (952)
Q Consensus 704 fVldlL~~~k~krVLDIGCGeG~ll~~LAr~g~~~~qVVGVDISeemLe~ArkrLsa~la~~~~~l~Pr~~~~nVtf~qG 783 (952)
.+.+.+...++.+|||+|||+|.++..+++.+ .+|+|+|+|+.+++.|++++... +..++++.++
T Consensus 23 ~l~~~~~~~~~~~vLdiG~G~G~~~~~l~~~~---~~v~~vD~s~~~~~~a~~~~~~~------------~~~~~~~~~~ 87 (199)
T 2xvm_A 23 EVLEAVKVVKPGKTLDLGCGNGRNSLYLAANG---YDVDAWDKNAMSIANVERIKSIE------------NLDNLHTRVV 87 (199)
T ss_dssp HHHHHTTTSCSCEEEEETCTTSHHHHHHHHTT---CEEEEEESCHHHHHHHHHHHHHH------------TCTTEEEEEC
T ss_pred HHHHHhhccCCCeEEEEcCCCCHHHHHHHHCC---CeEEEEECCHHHHHHHHHHHHhC------------CCCCcEEEEc
Confidence 45555666677899999999999999999886 79999999999999998876431 2347999999
Q ss_pred CccccCCCCCCccEEEEccccccCChhHHHHHHHHHHHccCCC-EEEEEec
Q 002218 784 SITVFDSRLHGFDIGTCLEVIEHMEEDEASQFGNIVLSSFRPR-ILIVSTP 833 (952)
Q Consensus 784 Da~dLpf~d~sFDVVVcieVIEHL~dD~l~~L~eeI~RvLKPG-~LIISTP 833 (952)
|+.++++ .+.||+|++..+++|++++....+.+++.++|||| .+++.++
T Consensus 88 d~~~~~~-~~~~D~v~~~~~l~~~~~~~~~~~l~~~~~~L~~gG~l~~~~~ 137 (199)
T 2xvm_A 88 DLNNLTF-DRQYDFILSTVVLMFLEAKTIPGLIANMQRCTKPGGYNLIVAA 137 (199)
T ss_dssp CGGGCCC-CCCEEEEEEESCGGGSCGGGHHHHHHHHHHTEEEEEEEEEEEE
T ss_pred chhhCCC-CCCceEEEEcchhhhCCHHHHHHHHHHHHHhcCCCeEEEEEEe
Confidence 9999887 78999999999999998666667777899999998 6555544
No 27
>2o57_A Putative sarcosine dimethylglycine methyltransferase; structural genomics, protein structure initiative, PSI-2; 1.95A {Galdieria sulphuraria} SCOP: c.66.1.18
Probab=99.58 E-value=1.1e-14 Score=152.08 Aligned_cols=121 Identities=13% Similarity=0.135 Sum_probs=98.2
Q ss_pred HHHHHHHHHh----hcCCCCEEEEEcCccchHHHHHhcCCCCCceEEEEeCChHHHHHHHHHHhhhhhcccccCCCCCCC
Q 002218 700 QRVEYALQHI----KESCATTLVDFGCGSGSLLDSLLDYPTALEKIVGVDISQKSLSRAAKIIHSKLSKKLDAAVPCTDV 775 (952)
Q Consensus 700 QR~efVldlL----~~~k~krVLDIGCGeG~ll~~LAr~g~~~~qVVGVDISeemLe~ArkrLsa~la~~~~~l~Pr~~~ 775 (952)
...+.+.+.+ ...++.+|||||||+|.++..+++..+ .+|+|+|+|+.+++.|++++... ...
T Consensus 65 ~~~~~l~~~l~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~~--~~v~gvD~s~~~~~~a~~~~~~~-----------~~~ 131 (297)
T 2o57_A 65 RTDEWLASELAMTGVLQRQAKGLDLGAGYGGAARFLVRKFG--VSIDCLNIAPVQNKRNEEYNNQA-----------GLA 131 (297)
T ss_dssp HHHHHHHHHHHHTTCCCTTCEEEEETCTTSHHHHHHHHHHC--CEEEEEESCHHHHHHHHHHHHHH-----------TCT
T ss_pred HHHHHHHHHhhhccCCCCCCEEEEeCCCCCHHHHHHHHHhC--CEEEEEeCCHHHHHHHHHHHHhc-----------CCC
Confidence 3445566666 455778999999999999999998632 69999999999999998876431 122
Q ss_pred ccEEEEEcCccccCCCCCCccEEEEccccccCChhHHHHHHHHHHHccCCC-EEEEEecCC
Q 002218 776 KSAVLFDGSITVFDSRLHGFDIGTCLEVIEHMEEDEASQFGNIVLSSFRPR-ILIVSTPNY 835 (952)
Q Consensus 776 ~nVtf~qGDa~dLpf~d~sFDVVVcieVIEHL~dD~l~~L~eeI~RvLKPG-~LIISTPN~ 835 (952)
.++++.++|+.++++.+++||+|++..+++|+++ . ..+.+++.++|||| .+++.+|+.
T Consensus 132 ~~~~~~~~d~~~~~~~~~~fD~v~~~~~l~~~~~-~-~~~l~~~~~~LkpgG~l~~~~~~~ 190 (297)
T 2o57_A 132 DNITVKYGSFLEIPCEDNSYDFIWSQDAFLHSPD-K-LKVFQECARVLKPRGVMAITDPMK 190 (297)
T ss_dssp TTEEEEECCTTSCSSCTTCEEEEEEESCGGGCSC-H-HHHHHHHHHHEEEEEEEEEEEEEE
T ss_pred cceEEEEcCcccCCCCCCCEeEEEecchhhhcCC-H-HHHHHHHHHHcCCCeEEEEEEecc
Confidence 4799999999999988899999999999999984 4 34456799999999 888887753
No 28
>3lcc_A Putative methyl chloride transferase; halide methyltransferase; HET: SAH; 1.80A {Arabidopsis thaliana}
Probab=99.58 E-value=6e-14 Score=141.70 Aligned_cols=158 Identities=13% Similarity=0.167 Sum_probs=114.4
Q ss_pred CCCEEEEEcCccchHHHHHhcCCCCCceEEEEeCChHHHHHHHHHHhhhhhcccccCCCCCCCccEEEEEcCccccCCCC
Q 002218 713 CATTLVDFGCGSGSLLDSLLDYPTALEKIVGVDISQKSLSRAAKIIHSKLSKKLDAAVPCTDVKSAVLFDGSITVFDSRL 792 (952)
Q Consensus 713 k~krVLDIGCGeG~ll~~LAr~g~~~~qVVGVDISeemLe~ArkrLsa~la~~~~~l~Pr~~~~nVtf~qGDa~dLpf~d 792 (952)
++.+|||||||+|.++..|++.+ .+|+|+|+|+.+++.|++++... ....++++.++|+.+++. .
T Consensus 66 ~~~~vLDiGcG~G~~~~~l~~~~---~~v~gvD~s~~~~~~a~~~~~~~-----------~~~~~v~~~~~d~~~~~~-~ 130 (235)
T 3lcc_A 66 PLGRALVPGCGGGHDVVAMASPE---RFVVGLDISESALAKANETYGSS-----------PKAEYFSFVKEDVFTWRP-T 130 (235)
T ss_dssp CCEEEEEETCTTCHHHHHHCBTT---EEEEEECSCHHHHHHHHHHHTTS-----------GGGGGEEEECCCTTTCCC-S
T ss_pred CCCCEEEeCCCCCHHHHHHHhCC---CeEEEEECCHHHHHHHHHHhhcc-----------CCCcceEEEECchhcCCC-C
Confidence 44699999999999999999876 79999999999999998876421 123579999999998774 4
Q ss_pred CCccEEEEccccccCChhHHHHHHHHHHHccCCC-EEEEEecCCchhHHHHhhccCccCCCCcchhhhccccccCCCCcc
Q 002218 793 HGFDIGTCLEVIEHMEEDEASQFGNIVLSSFRPR-ILIVSTPNYEYNAILQKSSSTIQEDDPDEKTQLQSCKFRNHDHKF 871 (952)
Q Consensus 793 ~sFDVVVcieVIEHL~dD~l~~L~eeI~RvLKPG-~LIISTPN~efN~lf~~L~~~ta~eYPde~~g~~~~~fRh~DHkF 871 (952)
..||+|++..+++|++++....+.+++.++|||| .+++...+.... ...+.+
T Consensus 131 ~~fD~v~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~---------------------------~~~~~~ 183 (235)
T 3lcc_A 131 ELFDLIFDYVFFCAIEPEMRPAWAKSMYELLKPDGELITLMYPITDH---------------------------VGGPPY 183 (235)
T ss_dssp SCEEEEEEESSTTTSCGGGHHHHHHHHHHHEEEEEEEEEEECCCSCC---------------------------CSCSSC
T ss_pred CCeeEEEEChhhhcCCHHHHHHHHHHHHHHCCCCcEEEEEEeccccc---------------------------CCCCCc
Confidence 5899999999999998777777778899999999 666655432200 011223
Q ss_pred ccCHHHHHHHHHHHHHHcCcEEEE-EeecCCCCCCCCccceeeeeec
Q 002218 872 EWTRDQFNCWATELAARHNYSVEF-SGVGGSGDREPGFASQIAVFRS 917 (952)
Q Consensus 872 EWTReEFqsWae~La~q~GYsVef-sGVG~~p~ge~G~aTQIAVFrR 917 (952)
.++++++. .++.++||.+.. ..+........| ...++.-++
T Consensus 184 ~~~~~~~~----~~l~~~Gf~~~~~~~~~~~~~~~~g-~e~~~~~~~ 225 (235)
T 3lcc_A 184 KVDVSTFE----EVLVPIGFKAVSVEENPHAIPTRKG-KEKLGRWKK 225 (235)
T ss_dssp CCCHHHHH----HHHGGGTEEEEEEEECTTCCTTTTT-SCEEEEEEE
T ss_pred cCCHHHHH----HHHHHcCCeEEEEEecCCccccccC-HHHHhhhhh
Confidence 47888888 456788998854 334433222333 234444444
No 29
>1kpg_A CFA synthase;, cyclopropane-fatty-acyl-phospholipid synthase 1; mixed alpha beta fold, structural genomics, PSI; HET: SAH 16A; 2.00A {Mycobacterium tuberculosis} SCOP: c.66.1.18 PDB: 1kp9_A* 1kph_A* 1tpy_A* 1l1e_A*
Probab=99.58 E-value=3.2e-14 Score=147.87 Aligned_cols=119 Identities=17% Similarity=0.307 Sum_probs=94.8
Q ss_pred HHHHHHHhhcCCCCEEEEEcCccchHHHHHhcCCCCCceEEEEeCChHHHHHHHHHHhhhhhcccccCCCCCCCccEEEE
Q 002218 702 VEYALQHIKESCATTLVDFGCGSGSLLDSLLDYPTALEKIVGVDISQKSLSRAAKIIHSKLSKKLDAAVPCTDVKSAVLF 781 (952)
Q Consensus 702 ~efVldlL~~~k~krVLDIGCGeG~ll~~LAr~g~~~~qVVGVDISeemLe~ArkrLsa~la~~~~~l~Pr~~~~nVtf~ 781 (952)
.+.+.+.+...++.+|||||||+|.++..+++..+ .+|+|+|+|+.+++.|++++... ....++++.
T Consensus 53 ~~~~~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~~--~~v~gvd~s~~~~~~a~~~~~~~-----------~~~~~~~~~ 119 (287)
T 1kpg_A 53 IDLALGKLGLQPGMTLLDVGCGWGATMMRAVEKYD--VNVVGLTLSKNQANHVQQLVANS-----------ENLRSKRVL 119 (287)
T ss_dssp HHHHHTTTTCCTTCEEEEETCTTSHHHHHHHHHHC--CEEEEEESCHHHHHHHHHHHHTC-----------CCCSCEEEE
T ss_pred HHHHHHHcCCCCcCEEEEECCcccHHHHHHHHHcC--CEEEEEECCHHHHHHHHHHHHhc-----------CCCCCeEEE
Confidence 34455555556778999999999999999984332 69999999999999998876421 223479999
Q ss_pred EcCccccCCCCCCccEEEEccccccCChhHHHHHHHHHHHccCCC-EEEEEecCCc
Q 002218 782 DGSITVFDSRLHGFDIGTCLEVIEHMEEDEASQFGNIVLSSFRPR-ILIVSTPNYE 836 (952)
Q Consensus 782 qGDa~dLpf~d~sFDVVVcieVIEHL~dD~l~~L~eeI~RvLKPG-~LIISTPN~e 836 (952)
++|+.+++ ++||+|++.++++|++++....+.+++.++|||| .+++.+++..
T Consensus 120 ~~d~~~~~---~~fD~v~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~ 172 (287)
T 1kpg_A 120 LAGWEQFD---EPVDRIVSIGAFEHFGHERYDAFFSLAHRLLPADGVMLLHTITGL 172 (287)
T ss_dssp ESCGGGCC---CCCSEEEEESCGGGTCTTTHHHHHHHHHHHSCTTCEEEEEEEEEC
T ss_pred ECChhhCC---CCeeEEEEeCchhhcChHHHHHHHHHHHHhcCCCCEEEEEEecCC
Confidence 99998775 7899999999999997544455567899999998 8888887754
No 30
>2gb4_A Thiopurine S-methyltransferase; 18204406, thiopurine methyltransferase, structural genomics, PSI, protein structure initiative; HET: SAH; 1.25A {Mus musculus} PDB: 3bgi_A* 3bgd_A* 2bzg_A* 2h11_A*
Probab=99.58 E-value=1.6e-14 Score=151.31 Aligned_cols=131 Identities=15% Similarity=0.137 Sum_probs=96.8
Q ss_pred HHHHHHHHHHhhcCCCCEEEEEcCccchHHHHHhcCCCCCceEEEEeCChHHHHHHHHHHhhhhhcccccCCCC------
Q 002218 699 KQRVEYALQHIKESCATTLVDFGCGSGSLLDSLLDYPTALEKIVGVDISQKSLSRAAKIIHSKLSKKLDAAVPC------ 772 (952)
Q Consensus 699 ~QR~efVldlL~~~k~krVLDIGCGeG~ll~~LAr~g~~~~qVVGVDISeemLe~ArkrLsa~la~~~~~l~Pr------ 772 (952)
+...+++...+...++.+|||+|||+|.++..|++.| .+|+|||+|+.||+.|+++....... ..+...
T Consensus 54 ~~l~~~~~~~~~~~~~~~vLD~GCG~G~~~~~La~~G---~~V~gvD~S~~~i~~a~~~~~~~~~~--~~~~~~~~~~~~ 128 (252)
T 2gb4_A 54 QLLKKHLDTFLKGQSGLRVFFPLCGKAIEMKWFADRG---HTVVGVEISEIGIREFFAEQNLSYTE--EPLAEIAGAKVF 128 (252)
T ss_dssp HHHHHHHHHHHTTCCSCEEEETTCTTCTHHHHHHHTT---CEEEEECSCHHHHHHHHHHTTCCEEE--EECTTSTTCEEE
T ss_pred HHHHHHHHHhccCCCCCeEEEeCCCCcHHHHHHHHCC---CeEEEEECCHHHHHHHHHhccccccc--cccccccccccc
Confidence 3344455444333467899999999999999999998 79999999999999997653200000 000000
Q ss_pred -CCCccEEEEEcCccccCCCC-CCccEEEEccccccCChhHHHHHHHHHHHccCCC-EEEEEecC
Q 002218 773 -TDVKSAVLFDGSITVFDSRL-HGFDIGTCLEVIEHMEEDEASQFGNIVLSSFRPR-ILIVSTPN 834 (952)
Q Consensus 773 -~~~~nVtf~qGDa~dLpf~d-~sFDVVVcieVIEHL~dD~l~~L~eeI~RvLKPG-~LIISTPN 834 (952)
....+++++++|+.++++.+ ++||+|++..+++|++++....+.+++.++|||| .+++.+.+
T Consensus 129 ~~~~~~i~~~~~D~~~l~~~~~~~FD~V~~~~~l~~l~~~~~~~~l~~~~~~LkpGG~l~l~~~~ 193 (252)
T 2gb4_A 129 KSSSGSISLYCCSIFDLPRANIGKFDRIWDRGALVAINPGDHDRYADIILSLLRKEFQYLVAVLS 193 (252)
T ss_dssp EETTSSEEEEESCTTTGGGGCCCCEEEEEESSSTTTSCGGGHHHHHHHHHHTEEEEEEEEEEEEE
T ss_pred ccCCCceEEEECccccCCcccCCCEEEEEEhhhhhhCCHHHHHHHHHHHHHHcCCCeEEEEEEEe
Confidence 01257999999999998764 8999999999999999777777778899999999 66555544
No 31
>3kkz_A Uncharacterized protein Q5LES9; putative methyltransferase, BFR250, NESG, structural genomics, PSI-2; HET: SAM; 1.68A {Bacteroides fragilis nctc 9343} PDB: 3e7p_A 3t7s_A* 3t7r_A* 3t7t_A*
Probab=99.57 E-value=8.1e-15 Score=151.08 Aligned_cols=125 Identities=18% Similarity=0.112 Sum_probs=100.1
Q ss_pred CchhHHHHHHHHHHHhh-cCCCCEEEEEcCccchHHHHHhcCCCCCceEEEEeCChHHHHHHHHHHhhhhhcccccCCCC
Q 002218 694 SPPLSKQRVEYALQHIK-ESCATTLVDFGCGSGSLLDSLLDYPTALEKIVGVDISQKSLSRAAKIIHSKLSKKLDAAVPC 772 (952)
Q Consensus 694 ~PPL~~QR~efVldlL~-~~k~krVLDIGCGeG~ll~~LAr~g~~~~qVVGVDISeemLe~ArkrLsa~la~~~~~l~Pr 772 (952)
..|........+.+.+. ..++.+|||||||+|.++..+++.+. .+|+|+|+|+.+++.|++++...
T Consensus 26 ~~~~~~~~~~~~l~~l~~~~~~~~vLDiGcG~G~~~~~la~~~~--~~v~gvD~s~~~~~~a~~~~~~~----------- 92 (267)
T 3kkz_A 26 QGPGSPEVTLKALSFIDNLTEKSLIADIGCGTGGQTMVLAGHVT--GQVTGLDFLSGFIDIFNRNARQS----------- 92 (267)
T ss_dssp SSSCCHHHHHHHHTTCCCCCTTCEEEEETCTTCHHHHHHHTTCS--SEEEEEESCHHHHHHHHHHHHHT-----------
T ss_pred cCCCCHHHHHHHHHhcccCCCCCEEEEeCCCCCHHHHHHHhccC--CEEEEEeCCHHHHHHHHHHHHHc-----------
Confidence 33445555556666665 45678999999999999999999852 69999999999999999876531
Q ss_pred CCCccEEEEEcCccccCCCCCCccEEEEccccccCChhHHHHHHHHHHHccCCC-EEEEEecC
Q 002218 773 TDVKSAVLFDGSITVFDSRLHGFDIGTCLEVIEHMEEDEASQFGNIVLSSFRPR-ILIVSTPN 834 (952)
Q Consensus 773 ~~~~nVtf~qGDa~dLpf~d~sFDVVVcieVIEHL~dD~l~~L~eeI~RvLKPG-~LIISTPN 834 (952)
....++++.++|+.++++..++||+|++..+++|+. . ..+.+++.++|||| .+++.+++
T Consensus 93 ~~~~~v~~~~~d~~~~~~~~~~fD~i~~~~~~~~~~--~-~~~l~~~~~~LkpgG~l~~~~~~ 152 (267)
T 3kkz_A 93 GLQNRVTGIVGSMDDLPFRNEELDLIWSEGAIYNIG--F-ERGLNEWRKYLKKGGYLAVSECS 152 (267)
T ss_dssp TCTTTEEEEECCTTSCCCCTTCEEEEEESSCGGGTC--H-HHHHHHHGGGEEEEEEEEEEEEE
T ss_pred CCCcCcEEEEcChhhCCCCCCCEEEEEEcCCceecC--H-HHHHHHHHHHcCCCCEEEEEEee
Confidence 122469999999999988888999999999999994 3 34456799999999 88888775
No 32
>3ofk_A Nodulation protein S; NODS, N-methyltransferase, SAH, SAM, NOD factor, fixation, symbiosis, alpha/beta structure; HET: SAH; 1.85A {Bradyrhizobium SP} PDB: 3ofj_A*
Probab=99.57 E-value=1.8e-14 Score=143.20 Aligned_cols=122 Identities=16% Similarity=0.283 Sum_probs=98.6
Q ss_pred hhHHHHHHHHH-HHhhcCCCCEEEEEcCccchHHHHHhcCCCCCceEEEEeCChHHHHHHHHHHhhhhhcccccCCCCCC
Q 002218 696 PLSKQRVEYAL-QHIKESCATTLVDFGCGSGSLLDSLLDYPTALEKIVGVDISQKSLSRAAKIIHSKLSKKLDAAVPCTD 774 (952)
Q Consensus 696 PL~~QR~efVl-dlL~~~k~krVLDIGCGeG~ll~~LAr~g~~~~qVVGVDISeemLe~ArkrLsa~la~~~~~l~Pr~~ 774 (952)
+....++..++ ..+...++.+|||||||+|.++..+++.+ .+|+|+|+|+.+++.|++++. .
T Consensus 33 ~~~~~~~~~~l~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~---~~v~~vD~s~~~~~~a~~~~~--------------~ 95 (216)
T 3ofk_A 33 PFERERHTQLLRLSLSSGAVSNGLEIGCAAGAFTEKLAPHC---KRLTVIDVMPRAIGRACQRTK--------------R 95 (216)
T ss_dssp HHHHHHHHHHHHHHTTTSSEEEEEEECCTTSHHHHHHGGGE---EEEEEEESCHHHHHHHHHHTT--------------T
T ss_pred HhHHHHHHHHHHHHcccCCCCcEEEEcCCCCHHHHHHHHcC---CEEEEEECCHHHHHHHHHhcc--------------c
Confidence 34443554444 35555667899999999999999999987 799999999999999988653 1
Q ss_pred CccEEEEEcCccccCCCCCCccEEEEccccccCCh-hHHHHHHHHHHHccCCC-EEEEEecCC
Q 002218 775 VKSAVLFDGSITVFDSRLHGFDIGTCLEVIEHMEE-DEASQFGNIVLSSFRPR-ILIVSTPNY 835 (952)
Q Consensus 775 ~~nVtf~qGDa~dLpf~d~sFDVVVcieVIEHL~d-D~l~~L~eeI~RvLKPG-~LIISTPN~ 835 (952)
..++++.++|+.+++ .+++||+|++..+++|+++ +....+.+++.++|||| .+++++|+.
T Consensus 96 ~~~~~~~~~d~~~~~-~~~~fD~v~~~~~l~~~~~~~~~~~~l~~~~~~L~pgG~l~~~~~~~ 157 (216)
T 3ofk_A 96 WSHISWAATDILQFS-TAELFDLIVVAEVLYYLEDMTQMRTAIDNMVKMLAPGGHLVFGSARD 157 (216)
T ss_dssp CSSEEEEECCTTTCC-CSCCEEEEEEESCGGGSSSHHHHHHHHHHHHHTEEEEEEEEEEEECH
T ss_pred CCCeEEEEcchhhCC-CCCCccEEEEccHHHhCCCHHHHHHHHHHHHHHcCCCCEEEEEecCC
Confidence 238999999999988 5789999999999999995 44445667899999999 888888863
No 33
>3cc8_A Putative methyltransferase; structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PS transferase; 1.64A {Bacillus cereus}
Probab=99.57 E-value=3.5e-14 Score=140.52 Aligned_cols=160 Identities=18% Similarity=0.239 Sum_probs=115.4
Q ss_pred HHHHHhhcCCCCEEEEEcCccchHHHHHhcCCCCCceEEEEeCChHHHHHHHHHHhhhhhcccccCCCCCCCccEEEEEc
Q 002218 704 YALQHIKESCATTLVDFGCGSGSLLDSLLDYPTALEKIVGVDISQKSLSRAAKIIHSKLSKKLDAAVPCTDVKSAVLFDG 783 (952)
Q Consensus 704 fVldlL~~~k~krVLDIGCGeG~ll~~LAr~g~~~~qVVGVDISeemLe~ArkrLsa~la~~~~~l~Pr~~~~nVtf~qG 783 (952)
.+.+.+. .++.+|||+|||+|.++..+++.+ .+++|+|+++.+++.++++. .++.++
T Consensus 24 ~l~~~~~-~~~~~vLdiG~G~G~~~~~l~~~~---~~~~~~D~~~~~~~~~~~~~-------------------~~~~~~ 80 (230)
T 3cc8_A 24 NLLKHIK-KEWKEVLDIGCSSGALGAAIKENG---TRVSGIEAFPEAAEQAKEKL-------------------DHVVLG 80 (230)
T ss_dssp HHHTTCC-TTCSEEEEETCTTSHHHHHHHTTT---CEEEEEESSHHHHHHHHTTS-------------------SEEEES
T ss_pred HHHHHhc-cCCCcEEEeCCCCCHHHHHHHhcC---CeEEEEeCCHHHHHHHHHhC-------------------CcEEEc
Confidence 3444444 467899999999999999999885 79999999999999986531 267889
Q ss_pred Cccc--cCCCCCCccEEEEccccccCChhHHHHHHHHHHHccCCC-EEEEEecCCchhHHHHhhccCccCCCCcchhhhc
Q 002218 784 SITV--FDSRLHGFDIGTCLEVIEHMEEDEASQFGNIVLSSFRPR-ILIVSTPNYEYNAILQKSSSTIQEDDPDEKTQLQ 860 (952)
Q Consensus 784 Da~d--Lpf~d~sFDVVVcieVIEHL~dD~l~~L~eeI~RvLKPG-~LIISTPN~efN~lf~~L~~~ta~eYPde~~g~~ 860 (952)
|+.+ .++.++.||+|++..+++|+++. . .+.+++.++|+|| .+++++|+......+..+.. ..+...
T Consensus 81 d~~~~~~~~~~~~fD~v~~~~~l~~~~~~-~-~~l~~~~~~L~~gG~l~~~~~~~~~~~~~~~~~~---~~~~~~----- 150 (230)
T 3cc8_A 81 DIETMDMPYEEEQFDCVIFGDVLEHLFDP-W-AVIEKVKPYIKQNGVILASIPNVSHISVLAPLLA---GNWTYT----- 150 (230)
T ss_dssp CTTTCCCCSCTTCEEEEEEESCGGGSSCH-H-HHHHHTGGGEEEEEEEEEEEECTTSHHHHHHHHT---TCCCCB-----
T ss_pred chhhcCCCCCCCccCEEEECChhhhcCCH-H-HHHHHHHHHcCCCCEEEEEeCCcchHHHHHHHhc---CCceec-----
Confidence 9876 55567899999999999999844 3 4456799999998 88999998765543332211 011110
Q ss_pred cccccCCCCccccCHHHHHHHHHHHHHHcCcEEE-EEeecC
Q 002218 861 SCKFRNHDHKFEWTRDQFNCWATELAARHNYSVE-FSGVGG 900 (952)
Q Consensus 861 ~~~fRh~DHkFEWTReEFqsWae~La~q~GYsVe-fsGVG~ 900 (952)
........|...++++++. .++.++||.+. ...+..
T Consensus 151 ~~~~~~~~~~~~~~~~~~~----~~l~~~Gf~~~~~~~~~~ 187 (230)
T 3cc8_A 151 EYGLLDKTHIRFFTFNEML----RMFLKAGYSISKVDRVYV 187 (230)
T ss_dssp SSSTTBTTCCCCCCHHHHH----HHHHHTTEEEEEEEEEEC
T ss_pred cCCCCCcceEEEecHHHHH----HHHHHcCCeEEEEEeccc
Confidence 1122344567779999998 45678899874 344443
No 34
>3bkw_A MLL3908 protein, S-adenosylmethionine dependent methyltransferase; NP_104914.1; HET: MSE; 1.60A {Mesorhizobium loti}
Probab=99.56 E-value=2.8e-14 Score=143.35 Aligned_cols=115 Identities=20% Similarity=0.218 Sum_probs=95.4
Q ss_pred HHHHHHhhcCCCCEEEEEcCccchHHHHHhcCCCCCceEEEEeCChHHHHHHHHHHhhhhhcccccCCCCCCCccEEEEE
Q 002218 703 EYALQHIKESCATTLVDFGCGSGSLLDSLLDYPTALEKIVGVDISQKSLSRAAKIIHSKLSKKLDAAVPCTDVKSAVLFD 782 (952)
Q Consensus 703 efVldlL~~~k~krVLDIGCGeG~ll~~LAr~g~~~~qVVGVDISeemLe~ArkrLsa~la~~~~~l~Pr~~~~nVtf~q 782 (952)
..+.+.+...++.+|||||||+|.++..+++.+. .+|+|+|+|+.+++.|+++.. ..++++.+
T Consensus 33 ~~l~~~~~~~~~~~vLdiG~G~G~~~~~l~~~~~--~~v~~vD~s~~~~~~a~~~~~---------------~~~~~~~~ 95 (243)
T 3bkw_A 33 PALRAMLPEVGGLRIVDLGCGFGWFCRWAHEHGA--SYVLGLDLSEKMLARARAAGP---------------DTGITYER 95 (243)
T ss_dssp HHHHHHSCCCTTCEEEEETCTTCHHHHHHHHTTC--SEEEEEESCHHHHHHHHHTSC---------------SSSEEEEE
T ss_pred HHHHHhccccCCCEEEEEcCcCCHHHHHHHHCCC--CeEEEEcCCHHHHHHHHHhcc---------------cCCceEEE
Confidence 3566666666788999999999999999998862 399999999999999977531 13799999
Q ss_pred cCccccCCCCCCccEEEEccccccCChhHHHHHHHHHHHccCCC-EEEEEecCCc
Q 002218 783 GSITVFDSRLHGFDIGTCLEVIEHMEEDEASQFGNIVLSSFRPR-ILIVSTPNYE 836 (952)
Q Consensus 783 GDa~dLpf~d~sFDVVVcieVIEHL~dD~l~~L~eeI~RvLKPG-~LIISTPN~e 836 (952)
+|+.++++..++||+|++..+++|++ +.... .+++.++|+|| .+++++|+..
T Consensus 96 ~d~~~~~~~~~~fD~v~~~~~l~~~~-~~~~~-l~~~~~~L~pgG~l~~~~~~~~ 148 (243)
T 3bkw_A 96 ADLDKLHLPQDSFDLAYSSLALHYVE-DVARL-FRTVHQALSPGGHFVFSTEHPI 148 (243)
T ss_dssp CCGGGCCCCTTCEEEEEEESCGGGCS-CHHHH-HHHHHHHEEEEEEEEEEEECHH
T ss_pred cChhhccCCCCCceEEEEeccccccc-hHHHH-HHHHHHhcCcCcEEEEEeCCcc
Confidence 99999887788999999999999998 44344 45799999999 8888888743
No 35
>3f4k_A Putative methyltransferase; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; 2.30A {Bacteroides thetaiotaomicron} PDB: 3t0i_A* 3svz_A* 3sxj_A*
Probab=99.56 E-value=8.9e-15 Score=148.78 Aligned_cols=123 Identities=18% Similarity=0.170 Sum_probs=98.4
Q ss_pred hhHHHHHHHHHHHhh-cCCCCEEEEEcCccchHHHHHhcCCCCCceEEEEeCChHHHHHHHHHHhhhhhcccccCCCCCC
Q 002218 696 PLSKQRVEYALQHIK-ESCATTLVDFGCGSGSLLDSLLDYPTALEKIVGVDISQKSLSRAAKIIHSKLSKKLDAAVPCTD 774 (952)
Q Consensus 696 PL~~QR~efVldlL~-~~k~krVLDIGCGeG~ll~~LAr~g~~~~qVVGVDISeemLe~ArkrLsa~la~~~~~l~Pr~~ 774 (952)
|........+.+.+. ..++.+|||||||+|.++..+++.++ .+|+|+|+|+.+++.|++++... ..
T Consensus 28 ~~~~~~~~~~l~~l~~~~~~~~vLDiG~G~G~~~~~l~~~~~--~~v~~vD~s~~~~~~a~~~~~~~-----------~~ 94 (257)
T 3f4k_A 28 PGSPEATRKAVSFINELTDDAKIADIGCGTGGQTLFLADYVK--GQITGIDLFPDFIEIFNENAVKA-----------NC 94 (257)
T ss_dssp SCCHHHHHHHHTTSCCCCTTCEEEEETCTTSHHHHHHHHHCC--SEEEEEESCHHHHHHHHHHHHHT-----------TC
T ss_pred CCCHHHHHHHHHHHhcCCCCCeEEEeCCCCCHHHHHHHHhCC--CeEEEEECCHHHHHHHHHHHHHc-----------CC
Confidence 444555555666653 34567999999999999999998873 49999999999999998876531 12
Q ss_pred CccEEEEEcCccccCCCCCCccEEEEccccccCChhHHHHHHHHHHHccCCC-EEEEEecC
Q 002218 775 VKSAVLFDGSITVFDSRLHGFDIGTCLEVIEHMEEDEASQFGNIVLSSFRPR-ILIVSTPN 834 (952)
Q Consensus 775 ~~nVtf~qGDa~dLpf~d~sFDVVVcieVIEHL~dD~l~~L~eeI~RvLKPG-~LIISTPN 834 (952)
..++++.++|+.++++.+++||+|++..+++|+. . ..+.+++.++|||| .+++.+++
T Consensus 95 ~~~~~~~~~d~~~~~~~~~~fD~v~~~~~l~~~~--~-~~~l~~~~~~L~pgG~l~~~~~~ 152 (257)
T 3f4k_A 95 ADRVKGITGSMDNLPFQNEELDLIWSEGAIYNIG--F-ERGMNEWSKYLKKGGFIAVSEAS 152 (257)
T ss_dssp TTTEEEEECCTTSCSSCTTCEEEEEEESCSCCCC--H-HHHHHHHHTTEEEEEEEEEEEEE
T ss_pred CCceEEEECChhhCCCCCCCEEEEEecChHhhcC--H-HHHHHHHHHHcCCCcEEEEEEee
Confidence 2359999999999998889999999999999994 3 34456799999999 88888875
No 36
>3vc1_A Geranyl diphosphate 2-C-methyltransferase; rossmann fold, methyltransferase fold, SAM-dependent methyltransferase; HET: SAH GST GOL; 1.82A {Streptomyces coelicolor} PDB: 3vc2_A* 4f84_A* 4f85_A 4f86_A*
Probab=99.56 E-value=1.2e-14 Score=154.22 Aligned_cols=123 Identities=13% Similarity=0.067 Sum_probs=100.2
Q ss_pred hhHHHHHHHHHHHhh-cCCCCEEEEEcCccchHHHHHhcC-CCCCceEEEEeCChHHHHHHHHHHhhhhhcccccCCCCC
Q 002218 696 PLSKQRVEYALQHIK-ESCATTLVDFGCGSGSLLDSLLDY-PTALEKIVGVDISQKSLSRAAKIIHSKLSKKLDAAVPCT 773 (952)
Q Consensus 696 PL~~QR~efVldlL~-~~k~krVLDIGCGeG~ll~~LAr~-g~~~~qVVGVDISeemLe~ArkrLsa~la~~~~~l~Pr~ 773 (952)
.+.....+.+.+.+. ..++.+|||||||+|.++..+++. + .+|+|+|+++.+++.|++++... .
T Consensus 99 ~~~~~~~~~l~~~l~~~~~~~~vLDiGcG~G~~~~~la~~~~---~~v~gvD~s~~~~~~a~~~~~~~-----------~ 164 (312)
T 3vc1_A 99 RLESAQAEFLMDHLGQAGPDDTLVDAGCGRGGSMVMAHRRFG---SRVEGVTLSAAQADFGNRRAREL-----------R 164 (312)
T ss_dssp HHHHHHHHHHHTTSCCCCTTCEEEEESCTTSHHHHHHHHHHC---CEEEEEESCHHHHHHHHHHHHHT-----------T
T ss_pred hHHHHHHHHHHHHhccCCCCCEEEEecCCCCHHHHHHHHHcC---CEEEEEeCCHHHHHHHHHHHHHc-----------C
Confidence 344555566777766 556789999999999999999987 5 79999999999999999876531 1
Q ss_pred CCccEEEEEcCccccCCCCCCccEEEEccccccCChhHHHHHHHHHHHccCCC-EEEEEecCC
Q 002218 774 DVKSAVLFDGSITVFDSRLHGFDIGTCLEVIEHMEEDEASQFGNIVLSSFRPR-ILIVSTPNY 835 (952)
Q Consensus 774 ~~~nVtf~qGDa~dLpf~d~sFDVVVcieVIEHL~dD~l~~L~eeI~RvLKPG-~LIISTPN~ 835 (952)
...++++.++|+.++++.++.||+|++.++++|++ ...+.+++.++|||| .+++.+++.
T Consensus 165 ~~~~v~~~~~d~~~~~~~~~~fD~V~~~~~l~~~~---~~~~l~~~~~~LkpgG~l~~~~~~~ 224 (312)
T 3vc1_A 165 IDDHVRSRVCNMLDTPFDKGAVTASWNNESTMYVD---LHDLFSEHSRFLKVGGRYVTITGCW 224 (312)
T ss_dssp CTTTEEEEECCTTSCCCCTTCEEEEEEESCGGGSC---HHHHHHHHHHHEEEEEEEEEEEEEE
T ss_pred CCCceEEEECChhcCCCCCCCEeEEEECCchhhCC---HHHHHHHHHHHcCCCcEEEEEEccc
Confidence 22379999999999988889999999999999995 345556799999998 777777654
No 37
>2yqz_A Hypothetical protein TTHA0223; RNA methyltransferase, SAM, structural genomics, NPPSFA; HET: SAM; 1.80A {Thermus thermophilus} PDB: 2yr0_A
Probab=99.56 E-value=3.5e-14 Score=144.24 Aligned_cols=149 Identities=9% Similarity=0.043 Sum_probs=107.9
Q ss_pred cCCCCEEEEEcCccchHHHHHhcCCCCCceEEEEeCChHHHHHHHHHHhhhhhcccccCCCCCCCccEEEEEcCccccCC
Q 002218 711 ESCATTLVDFGCGSGSLLDSLLDYPTALEKIVGVDISQKSLSRAAKIIHSKLSKKLDAAVPCTDVKSAVLFDGSITVFDS 790 (952)
Q Consensus 711 ~~k~krVLDIGCGeG~ll~~LAr~g~~~~qVVGVDISeemLe~ArkrLsa~la~~~~~l~Pr~~~~nVtf~qGDa~dLpf 790 (952)
..++.+|||||||+|.++..+++.+ .+|+|+|+|+.+++.|++++. ....++++.++|+.++++
T Consensus 37 ~~~~~~vLDiG~G~G~~~~~l~~~~---~~v~~vD~s~~~~~~a~~~~~-------------~~~~~~~~~~~d~~~~~~ 100 (263)
T 2yqz_A 37 KGEEPVFLELGVGTGRIALPLIARG---YRYIALDADAAMLEVFRQKIA-------------GVDRKVQVVQADARAIPL 100 (263)
T ss_dssp SSSCCEEEEETCTTSTTHHHHHTTT---CEEEEEESCHHHHHHHHHHTT-------------TSCTTEEEEESCTTSCCS
T ss_pred CCCCCEEEEeCCcCCHHHHHHHHCC---CEEEEEECCHHHHHHHHHHhh-------------ccCCceEEEEcccccCCC
Confidence 3467899999999999999999886 799999999999999987641 133589999999999988
Q ss_pred CCCCccEEEEccccccCChhHHHHHHHHHHHccCCC-EEEEEecCCc------hhHHHHhhccCccCCCCcchhhhcccc
Q 002218 791 RLHGFDIGTCLEVIEHMEEDEASQFGNIVLSSFRPR-ILIVSTPNYE------YNAILQKSSSTIQEDDPDEKTQLQSCK 863 (952)
Q Consensus 791 ~d~sFDVVVcieVIEHL~dD~l~~L~eeI~RvLKPG-~LIISTPN~e------fN~lf~~L~~~ta~eYPde~~g~~~~~ 863 (952)
.+++||+|++..+++|++ +... +.+++.++|||| .+++..++.+ +...+..+.. ...
T Consensus 101 ~~~~fD~v~~~~~l~~~~-~~~~-~l~~~~~~L~pgG~l~~~~~~~~~~~~~~~~~~~~~~~~--------------~~~ 164 (263)
T 2yqz_A 101 PDESVHGVIVVHLWHLVP-DWPK-VLAEAIRVLKPGGALLEGWDQAEASPEWTLQERWRAFAA--------------EEG 164 (263)
T ss_dssp CTTCEEEEEEESCGGGCT-THHH-HHHHHHHHEEEEEEEEEEEEEECCCHHHHHHHHHHHHHH--------------HHT
T ss_pred CCCCeeEEEECCchhhcC-CHHH-HHHHHHHHCCCCcEEEEEecCCCccHHHHHHHHHHHHHH--------------HhC
Confidence 888999999999999998 4434 445799999998 5555533321 1122222110 111
Q ss_pred ccCCCCccccCHHHHHHHHHHHHHHcCcEEEE
Q 002218 864 FRNHDHKFEWTRDQFNCWATELAARHNYSVEF 895 (952)
Q Consensus 864 fRh~DHkFEWTReEFqsWae~La~q~GYsVef 895 (952)
+....|...++.+++.+ ++.+.||.+..
T Consensus 165 ~~~~~~~~~~~~~~~~~----~l~~~Gf~~~~ 192 (263)
T 2yqz_A 165 FPVERGLHAKRLKEVEE----ALRRLGLKPRT 192 (263)
T ss_dssp CCCCCCHHHHHHHHHHH----HHHHTTCCCEE
T ss_pred CCcccccccCCHHHHHH----HHHHcCCCcce
Confidence 11233556678888874 56678987643
No 38
>3g2m_A PCZA361.24; SAM-dependent methyltransferase, glycopeptide antibiotics biosynthesis, structural genomics; 2.00A {Amycolatopsis orientalis} PDB: 3g2o_A* 3g2p_A* 3g2q_A*
Probab=99.56 E-value=2.1e-14 Score=150.85 Aligned_cols=118 Identities=15% Similarity=0.209 Sum_probs=96.1
Q ss_pred HHHHHHhhcCCCCEEEEEcCccchHHHHHhcCCCCCceEEEEeCChHHHHHHHHHHhhhhhcccccCCCCCCC---ccEE
Q 002218 703 EYALQHIKESCATTLVDFGCGSGSLLDSLLDYPTALEKIVGVDISQKSLSRAAKIIHSKLSKKLDAAVPCTDV---KSAV 779 (952)
Q Consensus 703 efVldlL~~~k~krVLDIGCGeG~ll~~LAr~g~~~~qVVGVDISeemLe~ArkrLsa~la~~~~~l~Pr~~~---~nVt 779 (952)
..+.+.+.. ++.+|||||||+|.++..|++.+ .+|+|+|+|+.+++.|++++... +. .+++
T Consensus 73 ~~~~~~~~~-~~~~vLDlGcG~G~~~~~l~~~~---~~v~gvD~s~~~~~~a~~~~~~~------------~~~~~~~v~ 136 (299)
T 3g2m_A 73 REFATRTGP-VSGPVLELAAGMGRLTFPFLDLG---WEVTALELSTSVLAAFRKRLAEA------------PADVRDRCT 136 (299)
T ss_dssp HHHHHHHCC-CCSCEEEETCTTTTTHHHHHTTT---CCEEEEESCHHHHHHHHHHHHTS------------CHHHHTTEE
T ss_pred HHHHHhhCC-CCCcEEEEeccCCHHHHHHHHcC---CeEEEEECCHHHHHHHHHHHhhc------------ccccccceE
Confidence 344454443 34599999999999999999987 78999999999999999876421 11 4799
Q ss_pred EEEcCccccCCCCCCccEEEEc-cccccCChhHHHHHHHHHHHccCCC-EEEEEecCCch
Q 002218 780 LFDGSITVFDSRLHGFDIGTCL-EVIEHMEEDEASQFGNIVLSSFRPR-ILIVSTPNYEY 837 (952)
Q Consensus 780 f~qGDa~dLpf~d~sFDVVVci-eVIEHL~dD~l~~L~eeI~RvLKPG-~LIISTPN~ef 837 (952)
++++|+.++++ .+.||+|+|. .+++|++++....+.+++.++|||| .+++.+++...
T Consensus 137 ~~~~d~~~~~~-~~~fD~v~~~~~~~~~~~~~~~~~~l~~~~~~L~pgG~l~~~~~~~~~ 195 (299)
T 3g2m_A 137 LVQGDMSAFAL-DKRFGTVVISSGSINELDEADRRGLYASVREHLEPGGKFLLSLAMSEA 195 (299)
T ss_dssp EEECBTTBCCC-SCCEEEEEECHHHHTTSCHHHHHHHHHHHHHHEEEEEEEEEEEECCHH
T ss_pred EEeCchhcCCc-CCCcCEEEECCcccccCCHHHHHHHHHHHHHHcCCCcEEEEEeecCcc
Confidence 99999999887 6899999975 6788888666677778899999999 99999998654
No 39
>2kw5_A SLR1183 protein; structural genomics, northeast structural genomics consortium (NESG), PSI-2, protein structure initiative, unknown function; NMR {Synechocystis} PDB: 3mer_A
Probab=99.56 E-value=8.6e-14 Score=136.91 Aligned_cols=157 Identities=14% Similarity=0.120 Sum_probs=114.6
Q ss_pred EEEEEcCccchHHHHHhcCCCCCceEEEEeCChHHHHHHHHHHhhhhhcccccCCCCCCCccEEEEEcCccccCCCCCCc
Q 002218 716 TLVDFGCGSGSLLDSLLDYPTALEKIVGVDISQKSLSRAAKIIHSKLSKKLDAAVPCTDVKSAVLFDGSITVFDSRLHGF 795 (952)
Q Consensus 716 rVLDIGCGeG~ll~~LAr~g~~~~qVVGVDISeemLe~ArkrLsa~la~~~~~l~Pr~~~~nVtf~qGDa~dLpf~d~sF 795 (952)
+|||||||+|.++..+++.+ .+|+|+|+|+.+++.|++++... + .++++.++|+.++++.++.|
T Consensus 32 ~vLdiGcG~G~~~~~l~~~~---~~v~~vD~s~~~~~~a~~~~~~~------------~-~~~~~~~~d~~~~~~~~~~f 95 (202)
T 2kw5_A 32 KILCLAEGEGRNACFLASLG---YEVTAVDQSSVGLAKAKQLAQEK------------G-VKITTVQSNLADFDIVADAW 95 (202)
T ss_dssp EEEECCCSCTHHHHHHHTTT---CEEEEECSSHHHHHHHHHHHHHH------------T-CCEEEECCBTTTBSCCTTTC
T ss_pred CEEEECCCCCHhHHHHHhCC---CeEEEEECCHHHHHHHHHHHHhc------------C-CceEEEEcChhhcCCCcCCc
Confidence 99999999999999999986 69999999999999998876421 1 27999999999988878899
Q ss_pred cEEEEccccccCChhHHHHHHHHHHHccCCC-EEEEEecCCchhHHHHhhccCccCCCCcchhhhccccccCCCCccccC
Q 002218 796 DIGTCLEVIEHMEEDEASQFGNIVLSSFRPR-ILIVSTPNYEYNAILQKSSSTIQEDDPDEKTQLQSCKFRNHDHKFEWT 874 (952)
Q Consensus 796 DVVVcieVIEHL~dD~l~~L~eeI~RvLKPG-~LIISTPN~efN~lf~~L~~~ta~eYPde~~g~~~~~fRh~DHkFEWT 874 (952)
|+|++. +.|+..+....+.+++.++|||| .+++.+++.+.... . .....++.+.++
T Consensus 96 D~v~~~--~~~~~~~~~~~~l~~~~~~L~pgG~l~~~~~~~~~~~~-~--------------------~~~~~~~~~~~~ 152 (202)
T 2kw5_A 96 EGIVSI--FCHLPSSLRQQLYPKVYQGLKPGGVFILEGFAPEQLQY-N--------------------TGGPKDLDLLPK 152 (202)
T ss_dssp SEEEEE--CCCCCHHHHHHHHHHHHTTCCSSEEEEEEEECTTTGGG-T--------------------SCCSSSGGGCCC
T ss_pred cEEEEE--hhcCCHHHHHHHHHHHHHhcCCCcEEEEEEeccccccC-C--------------------CCCCCcceeecC
Confidence 999994 45776566667777899999999 88888887542211 0 011224567799
Q ss_pred HHHHHHHHHHHHHHcCcEEEEEeecCC----CCCCCCccceeeeeec
Q 002218 875 RDQFNCWATELAARHNYSVEFSGVGGS----GDREPGFASQIAVFRS 917 (952)
Q Consensus 875 ReEFqsWae~La~q~GYsVefsGVG~~----p~ge~G~aTQIAVFrR 917 (952)
++++.++++ ||.+........ +....|....+....+
T Consensus 153 ~~~l~~~l~------Gf~v~~~~~~~~~~~~g~~~~~~~~~i~~~~~ 193 (202)
T 2kw5_A 153 LETLQSELP------SLNWLIANNLERNLDEGAYHQGKAALIQLLGQ 193 (202)
T ss_dssp HHHHHHHCS------SSCEEEEEEEEEECSCSSSSCCEEEEEEEEEC
T ss_pred HHHHHHHhc------CceEEEEEEEEeecCCCCCcccHHHHHHHHHH
Confidence 999996543 888754332221 1223455555555554
No 40
>3pfg_A N-methyltransferase; N,N-dimethyltransferase, SAM binding, DTDP-linked sugar BIND transferase; HET: SAM TLO; 1.35A {Streptomyces fradiae} PDB: 3pfh_A* 3px3_A* 3px2_A*
Probab=99.55 E-value=2.9e-14 Score=146.38 Aligned_cols=114 Identities=23% Similarity=0.332 Sum_probs=91.7
Q ss_pred HHHHHHHHHHHhhc--CCCCEEEEEcCccchHHHHHhcCCCCCceEEEEeCChHHHHHHHHHHhhhhhcccccCCCCCCC
Q 002218 698 SKQRVEYALQHIKE--SCATTLVDFGCGSGSLLDSLLDYPTALEKIVGVDISQKSLSRAAKIIHSKLSKKLDAAVPCTDV 775 (952)
Q Consensus 698 ~~QR~efVldlL~~--~k~krVLDIGCGeG~ll~~LAr~g~~~~qVVGVDISeemLe~ArkrLsa~la~~~~~l~Pr~~~ 775 (952)
+....+.+.+.+.. .++.+|||||||+|.++..|++.+ .+|+|+|+|+.+++.|++++
T Consensus 33 ~~~~~~~~~~~l~~~~~~~~~vLDiGcG~G~~~~~l~~~~---~~v~gvD~s~~~~~~a~~~~----------------- 92 (263)
T 3pfg_A 33 YHREAADLAALVRRHSPKAASLLDVACGTGMHLRHLADSF---GTVEGLELSADMLAIARRRN----------------- 92 (263)
T ss_dssp HHHHHHHHHHHHHHHCTTCCEEEEETCTTSHHHHHHTTTS---SEEEEEESCHHHHHHHHHHC-----------------
T ss_pred HHHHHHHHHHHHHhhCCCCCcEEEeCCcCCHHHHHHHHcC---CeEEEEECCHHHHHHHHhhC-----------------
Confidence 34444555555442 255899999999999999999987 69999999999999998753
Q ss_pred ccEEEEEcCccccCCCCCCccEEEEcc-ccccCCh-hHHHHHHHHHHHccCCC-EEEEEe
Q 002218 776 KSAVLFDGSITVFDSRLHGFDIGTCLE-VIEHMEE-DEASQFGNIVLSSFRPR-ILIVST 832 (952)
Q Consensus 776 ~nVtf~qGDa~dLpf~d~sFDVVVcie-VIEHL~d-D~l~~L~eeI~RvLKPG-~LIIST 832 (952)
.+++++++|+.++++ ++.||+|+|.. +++|++. +....+.+++.++|||| .+++.+
T Consensus 93 ~~~~~~~~d~~~~~~-~~~fD~v~~~~~~l~~~~~~~~~~~~l~~~~~~L~pgG~l~i~~ 151 (263)
T 3pfg_A 93 PDAVLHHGDMRDFSL-GRRFSAVTCMFSSIGHLAGQAELDAALERFAAHVLPDGVVVVEP 151 (263)
T ss_dssp TTSEEEECCTTTCCC-SCCEEEEEECTTGGGGSCHHHHHHHHHHHHHHTEEEEEEEEECC
T ss_pred CCCEEEECChHHCCc-cCCcCEEEEcCchhhhcCCHHHHHHHHHHHHHhcCCCcEEEEEe
Confidence 268999999999887 78999999998 9999974 34456667899999999 666653
No 41
>3cgg_A SAM-dependent methyltransferase; NP_600671.1, methyltransferase domain, structural genomics; HET: NHE CIT; 2.00A {Corynebacterium glutamicum atcc 13032}
Probab=99.55 E-value=1.2e-13 Score=132.91 Aligned_cols=103 Identities=17% Similarity=0.232 Sum_probs=89.1
Q ss_pred CCCCEEEEEcCccchHHHHHhcCCCCCceEEEEeCChHHHHHHHHHHhhhhhcccccCCCCCCCccEEEEEcCccccCCC
Q 002218 712 SCATTLVDFGCGSGSLLDSLLDYPTALEKIVGVDISQKSLSRAAKIIHSKLSKKLDAAVPCTDVKSAVLFDGSITVFDSR 791 (952)
Q Consensus 712 ~k~krVLDIGCGeG~ll~~LAr~g~~~~qVVGVDISeemLe~ArkrLsa~la~~~~~l~Pr~~~~nVtf~qGDa~dLpf~ 791 (952)
.++.+|||+|||+|.++..+++.+ .+++|+|+++.+++.+++++ .++++.++|+.++++.
T Consensus 45 ~~~~~vLdiG~G~G~~~~~l~~~~---~~v~~~D~~~~~~~~a~~~~-----------------~~~~~~~~d~~~~~~~ 104 (195)
T 3cgg_A 45 PRGAKILDAGCGQGRIGGYLSKQG---HDVLGTDLDPILIDYAKQDF-----------------PEARWVVGDLSVDQIS 104 (195)
T ss_dssp CTTCEEEEETCTTTHHHHHHHHTT---CEEEEEESCHHHHHHHHHHC-----------------TTSEEEECCTTTSCCC
T ss_pred cCCCeEEEECCCCCHHHHHHHHCC---CcEEEEcCCHHHHHHHHHhC-----------------CCCcEEEcccccCCCC
Confidence 367899999999999999999886 79999999999999998753 2588999999988877
Q ss_pred CCCccEEEEc-cccccCChhHHHHHHHHHHHccCCC-EEEEEecC
Q 002218 792 LHGFDIGTCL-EVIEHMEEDEASQFGNIVLSSFRPR-ILIVSTPN 834 (952)
Q Consensus 792 d~sFDVVVci-eVIEHL~dD~l~~L~eeI~RvLKPG-~LIISTPN 834 (952)
.+.||+|++. .+++|+..+....+.+.+.++|+|| .+++.+++
T Consensus 105 ~~~~D~i~~~~~~~~~~~~~~~~~~l~~~~~~l~~~G~l~~~~~~ 149 (195)
T 3cgg_A 105 ETDFDLIVSAGNVMGFLAEDGREPALANIHRALGADGRAVIGFGA 149 (195)
T ss_dssp CCCEEEEEECCCCGGGSCHHHHHHHHHHHHHHEEEEEEEEEEEET
T ss_pred CCceeEEEECCcHHhhcChHHHHHHHHHHHHHhCCCCEEEEEeCC
Confidence 7899999998 7999998776677778899999998 77776654
No 42
>2gs9_A Hypothetical protein TT1324; methyl transferase, structural genomics, NPPSFA, national PR protein structural and functional analyses; HET: SAH; 2.60A {Thermus thermophilus}
Probab=99.55 E-value=3.7e-14 Score=140.45 Aligned_cols=132 Identities=18% Similarity=0.182 Sum_probs=100.3
Q ss_pred CCCEEEEEcCccchHHHHHhcCCCCCceEEEEeCChHHHHHHHHHHhhhhhcccccCCCCCCCccEEEEEcCccccCCCC
Q 002218 713 CATTLVDFGCGSGSLLDSLLDYPTALEKIVGVDISQKSLSRAAKIIHSKLSKKLDAAVPCTDVKSAVLFDGSITVFDSRL 792 (952)
Q Consensus 713 k~krVLDIGCGeG~ll~~LAr~g~~~~qVVGVDISeemLe~ArkrLsa~la~~~~~l~Pr~~~~nVtf~qGDa~dLpf~d 792 (952)
++.+|||||||+|.++..+ + ..+++|+|+|+.+++.|+++. .++++.++|+.++++.+
T Consensus 36 ~~~~vLdiG~G~G~~~~~l---~--~~~v~~vD~s~~~~~~a~~~~-----------------~~~~~~~~d~~~~~~~~ 93 (211)
T 2gs9_A 36 PGESLLEVGAGTGYWLRRL---P--YPQKVGVEPSEAMLAVGRRRA-----------------PEATWVRAWGEALPFPG 93 (211)
T ss_dssp CCSEEEEETCTTCHHHHHC---C--CSEEEEECCCHHHHHHHHHHC-----------------TTSEEECCCTTSCCSCS
T ss_pred CCCeEEEECCCCCHhHHhC---C--CCeEEEEeCCHHHHHHHHHhC-----------------CCcEEEEcccccCCCCC
Confidence 6789999999999999887 3 138999999999999998753 36889999999998888
Q ss_pred CCccEEEEccccccCChhHHHHHHHHHHHccCCC-EEEEEecCCchh--HHHHhhccCccCCCCcchhhhccccccCCCC
Q 002218 793 HGFDIGTCLEVIEHMEEDEASQFGNIVLSSFRPR-ILIVSTPNYEYN--AILQKSSSTIQEDDPDEKTQLQSCKFRNHDH 869 (952)
Q Consensus 793 ~sFDVVVcieVIEHL~dD~l~~L~eeI~RvLKPG-~LIISTPN~efN--~lf~~L~~~ta~eYPde~~g~~~~~fRh~DH 869 (952)
++||+|++..+++|++ +.... .+++.++|||| .+++++|+.+.. ..+... .........|
T Consensus 94 ~~fD~v~~~~~l~~~~-~~~~~-l~~~~~~L~pgG~l~i~~~~~~~~~~~~~~~~---------------~~~~~~~~~~ 156 (211)
T 2gs9_A 94 ESFDVVLLFTTLEFVE-DVERV-LLEARRVLRPGGALVVGVLEALSPWAALYRRL---------------GEKGVLPWAQ 156 (211)
T ss_dssp SCEEEEEEESCTTTCS-CHHHH-HHHHHHHEEEEEEEEEEEECTTSHHHHHHHHH---------------HHTTCTTGGG
T ss_pred CcEEEEEEcChhhhcC-CHHHH-HHHHHHHcCCCCEEEEEecCCcCcHHHHHHHH---------------hhccCccccc
Confidence 8999999999999998 44344 45799999998 888899886421 111111 0001111235
Q ss_pred ccccCHHHHHHHHH
Q 002218 870 KFEWTRDQFNCWAT 883 (952)
Q Consensus 870 kFEWTReEFqsWae 883 (952)
...++++++.+|++
T Consensus 157 ~~~~s~~~l~~~l~ 170 (211)
T 2gs9_A 157 ARFLAREDLKALLG 170 (211)
T ss_dssp CCCCCHHHHHHHHC
T ss_pred cccCCHHHHHHHhc
Confidence 66789999997755
No 43
>3hem_A Cyclopropane-fatty-acyl-phospholipid synthase 2; protein-ligand complex, cytoplasm, lipid synthesis, methyltransferase; HET: D22; 2.39A {Mycobacterium tuberculosis} SCOP: c.66.1.18 PDB: 1kpi_A*
Probab=99.55 E-value=1.2e-13 Score=145.44 Aligned_cols=120 Identities=16% Similarity=0.223 Sum_probs=95.7
Q ss_pred HHHHHHHHhhcCCCCEEEEEcCccchHHHHHhcCCCCCceEEEEeCChHHHHHHHHHHhhhhhcccccCCCCCCCccEEE
Q 002218 701 RVEYALQHIKESCATTLVDFGCGSGSLLDSLLDYPTALEKIVGVDISQKSLSRAAKIIHSKLSKKLDAAVPCTDVKSAVL 780 (952)
Q Consensus 701 R~efVldlL~~~k~krVLDIGCGeG~ll~~LAr~g~~~~qVVGVDISeemLe~ArkrLsa~la~~~~~l~Pr~~~~nVtf 780 (952)
.++.+.+.+...++.+|||||||+|.++..+++..+ .+|+|+|+|+.+++.|++++... ....++++
T Consensus 60 ~~~~~~~~~~~~~~~~vLDiGcG~G~~~~~la~~~~--~~v~gvD~s~~~~~~a~~~~~~~-----------~~~~~v~~ 126 (302)
T 3hem_A 60 KRKLALDKLNLEPGMTLLDIGCGWGSTMRHAVAEYD--VNVIGLTLSENQYAHDKAMFDEV-----------DSPRRKEV 126 (302)
T ss_dssp HHHHHHHTTCCCTTCEEEEETCTTSHHHHHHHHHHC--CEEEEEECCHHHHHHHHHHHHHS-----------CCSSCEEE
T ss_pred HHHHHHHHcCCCCcCEEEEeeccCcHHHHHHHHhCC--CEEEEEECCHHHHHHHHHHHHhc-----------CCCCceEE
Confidence 334455555556778999999999999999998732 79999999999999999876531 12237999
Q ss_pred EEcCccccCCCCCCccEEEEccccccCCh-------hHHHHHHHHHHHccCCC-EEEEEecCCc
Q 002218 781 FDGSITVFDSRLHGFDIGTCLEVIEHMEE-------DEASQFGNIVLSSFRPR-ILIVSTPNYE 836 (952)
Q Consensus 781 ~qGDa~dLpf~d~sFDVVVcieVIEHL~d-------D~l~~L~eeI~RvLKPG-~LIISTPN~e 836 (952)
.++|+.++ ++.||+|++.++++|+++ +....+.+++.++|||| .+++.++...
T Consensus 127 ~~~d~~~~---~~~fD~v~~~~~~~~~~d~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~ 187 (302)
T 3hem_A 127 RIQGWEEF---DEPVDRIVSLGAFEHFADGAGDAGFERYDTFFKKFYNLTPDDGRMLLHTITIP 187 (302)
T ss_dssp EECCGGGC---CCCCSEEEEESCGGGTTCCSSCCCTTHHHHHHHHHHHSSCTTCEEEEEEEECC
T ss_pred EECCHHHc---CCCccEEEEcchHHhcCccccccchhHHHHHHHHHHHhcCCCcEEEEEEEecc
Confidence 99999877 689999999999999953 44556667899999999 7777776543
No 44
>3thr_A Glycine N-methyltransferase; GNMT, folate, methyltransferase binding, liver cytosol, transferase-transferase inhibitor C; HET: C2F TAM; 2.00A {Rattus norvegicus} SCOP: c.66.1.5 PDB: 3ths_A* 1xva_A* 1d2c_A 1kia_A* 1nbh_A* 1bhj_A* 2idj_A 2idk_A* 1d2g_A 1d2h_A* 1nbi_A* 1r8x_A 1r8y_A 1r74_A* 2azt_A*
Probab=99.55 E-value=1.2e-14 Score=151.19 Aligned_cols=128 Identities=23% Similarity=0.340 Sum_probs=104.0
Q ss_pred HHHHHHHHHHhhcCCCCEEEEEcCccchHHHHHhcCCCCCceEEEEeCChHHHHHHHHHHhhhhhcccccCCCCCCCccE
Q 002218 699 KQRVEYALQHIKESCATTLVDFGCGSGSLLDSLLDYPTALEKIVGVDISQKSLSRAAKIIHSKLSKKLDAAVPCTDVKSA 778 (952)
Q Consensus 699 ~QR~efVldlL~~~k~krVLDIGCGeG~ll~~LAr~g~~~~qVVGVDISeemLe~ArkrLsa~la~~~~~l~Pr~~~~nV 778 (952)
..-.+++.+.+...++.+|||||||+|.++..|++.+ .+|+|+|+|+.|++.|+++...... .....++
T Consensus 43 ~~~~~~l~~~l~~~~~~~vLDiGcG~G~~~~~l~~~~---~~v~gvD~s~~~l~~a~~~~~~~~~--------~~~~~~~ 111 (293)
T 3thr_A 43 AEYKAWLLGLLRQHGCHRVLDVACGTGVDSIMLVEEG---FSVTSVDASDKMLKYALKERWNRRK--------EPAFDKW 111 (293)
T ss_dssp HHHHHHHHHHHHHTTCCEEEETTCTTSHHHHHHHHTT---CEEEEEESCHHHHHHHHHHHHHTTT--------SHHHHTC
T ss_pred HHHHHHHHHHhcccCCCEEEEecCCCCHHHHHHHHCC---CeEEEEECCHHHHHHHHHhhhhccc--------cccccee
Confidence 3344567777777788999999999999999999987 6999999999999999877532110 1123478
Q ss_pred EEEEcCccccC---CCCCCccEEEEc-cccccCCh-----hHHHHHHHHHHHccCCC-EEEEEecCCch
Q 002218 779 VLFDGSITVFD---SRLHGFDIGTCL-EVIEHMEE-----DEASQFGNIVLSSFRPR-ILIVSTPNYEY 837 (952)
Q Consensus 779 tf~qGDa~dLp---f~d~sFDVVVci-eVIEHL~d-----D~l~~L~eeI~RvLKPG-~LIISTPN~ef 837 (952)
.+..+|+.+++ +.+++||+|+|. .+++|+++ +....+.+++.++|||| .+++++||.+.
T Consensus 112 ~~~~~d~~~~~~~~~~~~~fD~V~~~g~~l~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~ 180 (293)
T 3thr_A 112 VIEEANWLTLDKDVPAGDGFDAVICLGNSFAHLPDSKGDQSEHRLALKNIASMVRPGGLLVIDHRNYDY 180 (293)
T ss_dssp EEEECCGGGHHHHSCCTTCEEEEEECTTCGGGSCCSSSSSHHHHHHHHHHHHTEEEEEEEEEEEECHHH
T ss_pred eEeecChhhCccccccCCCeEEEEEcChHHhhcCccccCHHHHHHHHHHHHHHcCCCeEEEEEeCCHHH
Confidence 99999999887 778899999998 89999996 45566677899999999 88999998654
No 45
>3g07_A 7SK snRNA methylphosphate capping enzyme; structural genomics consortium (SGC), methyltransferase, phosphoprotein, S-adenosyl-L-methionine; HET: SAM; 2.65A {Homo sapiens}
Probab=99.54 E-value=5.9e-15 Score=156.06 Aligned_cols=185 Identities=18% Similarity=0.323 Sum_probs=114.8
Q ss_pred CCCEEEEEcCccchHHHHHhcCCCCCceEEEEeCChHHHHHHHHHHhhhhhccc--------------------------
Q 002218 713 CATTLVDFGCGSGSLLDSLLDYPTALEKIVGVDISQKSLSRAAKIIHSKLSKKL-------------------------- 766 (952)
Q Consensus 713 k~krVLDIGCGeG~ll~~LAr~g~~~~qVVGVDISeemLe~ArkrLsa~la~~~-------------------------- 766 (952)
++++|||||||+|.++..|++.. +..+|+|||+|+.|++.|++++........
T Consensus 46 ~~~~VLDiGCG~G~~~~~la~~~-~~~~v~gvDis~~~i~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 124 (292)
T 3g07_A 46 RGRDVLDLGCNVGHLTLSIACKW-GPSRMVGLDIDSRLIHSARQNIRHYLSEELRLPPQTLEGDPGAEGEEGTTTVRKRS 124 (292)
T ss_dssp TTSEEEEESCTTCHHHHHHHHHT-CCSEEEEEESCHHHHHHHHHTC----------------------------------
T ss_pred CCCcEEEeCCCCCHHHHHHHHHc-CCCEEEEECCCHHHHHHHHHHHHhhhhhhccccccccccccccccccccccccccc
Confidence 67899999999999999999874 227999999999999999886542210000
Q ss_pred --------------------ccCCCCCCCccEEEEEcCccccC-----CCCCCccEEEEccccccC----ChhHHHHHHH
Q 002218 767 --------------------DAAVPCTDVKSAVLFDGSITVFD-----SRLHGFDIGTCLEVIEHM----EEDEASQFGN 817 (952)
Q Consensus 767 --------------------~~l~Pr~~~~nVtf~qGDa~dLp-----f~d~sFDVVVcieVIEHL----~dD~l~~L~e 817 (952)
....+...+.+|+|.++|+...+ +..+.||+|+|..+++|+ .++....+.+
T Consensus 125 ~~p~~~~~~~g~~~~p~~~~~~~~~~~~p~~v~f~~~d~~~~~~~~~~~~~~~fD~I~~~~vl~~ihl~~~~~~~~~~l~ 204 (292)
T 3g07_A 125 CFPASLTASRGPIAAPQVPLDGADTSVFPNNVVFVTGNYVLDRDDLVEAQTPEYDVVLCLSLTKWVHLNWGDEGLKRMFR 204 (292)
T ss_dssp -----------------CCSSTTCCSSTTTTEEEEECCCCCSSHHHHTTCCCCEEEEEEESCHHHHHHHHHHHHHHHHHH
T ss_pred cccchhhhccCccccccccccccccccccccceEEecccccCccccccccCCCcCEEEEChHHHHhhhcCCHHHHHHHHH
Confidence 00000011248999999997654 457899999999999988 4456667778
Q ss_pred HHHHccCCC-EEEEEecCCchhHHHHhhccCccCCCCcchhhhccccccCCCCccccCHHHHHHHHHHHHHH--cCcEE-
Q 002218 818 IVLSSFRPR-ILIVSTPNYEYNAILQKSSSTIQEDDPDEKTQLQSCKFRNHDHKFEWTRDQFNCWATELAAR--HNYSV- 893 (952)
Q Consensus 818 eI~RvLKPG-~LIISTPN~efN~lf~~L~~~ta~eYPde~~g~~~~~fRh~DHkFEWTReEFqsWae~La~q--~GYsV- 893 (952)
++.++|+|| .+++.+++. ..+.... .. .......-+...|.+++|..|+ .+ .||..
T Consensus 205 ~~~~~LkpGG~lil~~~~~--~~y~~~~------~~--------~~~~~~~~~~~~~~p~~~~~~L----~~~~~GF~~~ 264 (292)
T 3g07_A 205 RIYRHLRPGGILVLEPQPW--SSYGKRK------TL--------TETIYKNYYRIQLKPEQFSSYL----TSPDVGFSSY 264 (292)
T ss_dssp HHHHHEEEEEEEEEECCCH--HHHHTTT------TS--------CHHHHHHHHHCCCCGGGHHHHH----TSTTTCCCEE
T ss_pred HHHHHhCCCcEEEEecCCc--hhhhhhh------cc--------cHHHHhhhhcEEEcHHHHHHHH----HhcCCCceEE
Confidence 899999999 666665542 2221110 00 0001111123456788999763 44 79954
Q ss_pred EEEeecCCCCCCCCccceeeeeecCCC
Q 002218 894 EFSGVGGSGDREPGFASQIAVFRSRTP 920 (952)
Q Consensus 894 efsGVG~~p~ge~G~aTQIAVFrRk~~ 920 (952)
+..+.. .....|+..++-+|+|+..
T Consensus 265 ~~~~~~--~~~~~g~~r~i~~~~k~~~ 289 (292)
T 3g07_A 265 ELVATP--HNTSKGFQRPVYLFHKARS 289 (292)
T ss_dssp EEC-------------CCCEEEECCC-
T ss_pred EEeccC--CCCCCCccceEEEEEcCCC
Confidence 554433 2235788999999999643
No 46
>2fk8_A Methoxy mycolic acid synthase 4; S-adenosylmethionine-dependent methyltransferase fold, trans; HET: SAM; 2.00A {Mycobacterium tuberculosis} SCOP: c.66.1.18 PDB: 2fk7_A* 3ha3_A* 3ha5_A* 3ha7_A*
Probab=99.53 E-value=1.1e-13 Score=146.35 Aligned_cols=120 Identities=18% Similarity=0.298 Sum_probs=96.5
Q ss_pred HHHHHHHHhhcCCCCEEEEEcCccchHHHHHhcC-CCCCceEEEEeCChHHHHHHHHHHhhhhhcccccCCCCCCCccEE
Q 002218 701 RVEYALQHIKESCATTLVDFGCGSGSLLDSLLDY-PTALEKIVGVDISQKSLSRAAKIIHSKLSKKLDAAVPCTDVKSAV 779 (952)
Q Consensus 701 R~efVldlL~~~k~krVLDIGCGeG~ll~~LAr~-g~~~~qVVGVDISeemLe~ArkrLsa~la~~~~~l~Pr~~~~nVt 779 (952)
..+.+.+.+...++.+|||||||+|.++..+++. + .+|+|+|+|+.+++.|++++... ....+++
T Consensus 78 ~~~~~~~~~~~~~~~~vLDiGcG~G~~~~~la~~~~---~~v~gvD~s~~~~~~a~~~~~~~-----------~~~~~v~ 143 (318)
T 2fk8_A 78 KVDLNLDKLDLKPGMTLLDIGCGWGTTMRRAVERFD---VNVIGLTLSKNQHARCEQVLASI-----------DTNRSRQ 143 (318)
T ss_dssp HHHHHHTTSCCCTTCEEEEESCTTSHHHHHHHHHHC---CEEEEEESCHHHHHHHHHHHHTS-----------CCSSCEE
T ss_pred HHHHHHHhcCCCCcCEEEEEcccchHHHHHHHHHCC---CEEEEEECCHHHHHHHHHHHHhc-----------CCCCceE
Confidence 3344555555567789999999999999999987 5 69999999999999998876421 1224699
Q ss_pred EEEcCccccCCCCCCccEEEEccccccCChhHHHHHHHHHHHccCCC-EEEEEecCCch
Q 002218 780 LFDGSITVFDSRLHGFDIGTCLEVIEHMEEDEASQFGNIVLSSFRPR-ILIVSTPNYEY 837 (952)
Q Consensus 780 f~qGDa~dLpf~d~sFDVVVcieVIEHL~dD~l~~L~eeI~RvLKPG-~LIISTPN~ef 837 (952)
+.++|+.+++ ++||+|++.++++|++.+....+.+++.++|||| .+++.+++...
T Consensus 144 ~~~~d~~~~~---~~fD~v~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~ 199 (318)
T 2fk8_A 144 VLLQGWEDFA---EPVDRIVSIEAFEHFGHENYDDFFKRCFNIMPADGRMTVQSSVSYH 199 (318)
T ss_dssp EEESCGGGCC---CCCSEEEEESCGGGTCGGGHHHHHHHHHHHSCTTCEEEEEEEECCC
T ss_pred EEECChHHCC---CCcCEEEEeChHHhcCHHHHHHHHHHHHHhcCCCcEEEEEEeccCC
Confidence 9999998875 7899999999999997545556667899999999 88888887543
No 47
>3bxo_A N,N-dimethyltransferase; desosamine, sugar, carbohydrate, antibiotic, SAM, adoMet; HET: SAM UPP; 2.00A {Streptomyces venezuelae}
Probab=99.53 E-value=3.4e-14 Score=142.32 Aligned_cols=116 Identities=17% Similarity=0.304 Sum_probs=91.2
Q ss_pred HHHHHHHHHHhhc--CCCCEEEEEcCccchHHHHHhcCCCCCceEEEEeCChHHHHHHHHHHhhhhhcccccCCCCCCCc
Q 002218 699 KQRVEYALQHIKE--SCATTLVDFGCGSGSLLDSLLDYPTALEKIVGVDISQKSLSRAAKIIHSKLSKKLDAAVPCTDVK 776 (952)
Q Consensus 699 ~QR~efVldlL~~--~k~krVLDIGCGeG~ll~~LAr~g~~~~qVVGVDISeemLe~ArkrLsa~la~~~~~l~Pr~~~~ 776 (952)
....+.+.+.+.. .++.+|||+|||+|.++..+++.+ .+|+|+|+|+.+++.|++++ .
T Consensus 24 ~~~~~~~~~~l~~~~~~~~~vLdiG~G~G~~~~~l~~~~---~~v~~~D~s~~~~~~a~~~~-----------------~ 83 (239)
T 3bxo_A 24 AAEASDIADLVRSRTPEASSLLDVACGTGTHLEHFTKEF---GDTAGLELSEDMLTHARKRL-----------------P 83 (239)
T ss_dssp HHHHHHHHHHHHHHCTTCCEEEEETCTTSHHHHHHHHHH---SEEEEEESCHHHHHHHHHHC-----------------T
T ss_pred HHHHHHHHHHHHHhcCCCCeEEEecccCCHHHHHHHHhC---CcEEEEeCCHHHHHHHHHhC-----------------C
Confidence 3333444444432 467899999999999999999887 58999999999999997752 2
Q ss_pred cEEEEEcCccccCCCCCCccEEEEc-cccccCCh-hHHHHHHHHHHHccCCC-EEEEEecCC
Q 002218 777 SAVLFDGSITVFDSRLHGFDIGTCL-EVIEHMEE-DEASQFGNIVLSSFRPR-ILIVSTPNY 835 (952)
Q Consensus 777 nVtf~qGDa~dLpf~d~sFDVVVci-eVIEHL~d-D~l~~L~eeI~RvLKPG-~LIISTPN~ 835 (952)
++++.++|+.++++ .+.||+|+|. .+++|+.. +....+.+++.++|||| .+++.+++.
T Consensus 84 ~~~~~~~d~~~~~~-~~~~D~v~~~~~~~~~~~~~~~~~~~l~~~~~~L~pgG~l~~~~~~~ 144 (239)
T 3bxo_A 84 DATLHQGDMRDFRL-GRKFSAVVSMFSSVGYLKTTEELGAAVASFAEHLEPGGVVVVEPWWF 144 (239)
T ss_dssp TCEEEECCTTTCCC-SSCEEEEEECTTGGGGCCSHHHHHHHHHHHHHTEEEEEEEEECCCCC
T ss_pred CCEEEECCHHHccc-CCCCcEEEEcCchHhhcCCHHHHHHHHHHHHHhcCCCeEEEEEeccC
Confidence 68999999998876 6789999965 49999963 44556667899999999 777776654
No 48
>3ccf_A Cyclopropane-fatty-acyl-phospholipid synthase; YP_321342.1, putative methyltransferase; 1.90A {Anabaena variabilis atcc 29413}
Probab=99.53 E-value=3.8e-14 Score=147.27 Aligned_cols=157 Identities=11% Similarity=0.167 Sum_probs=110.9
Q ss_pred HHHHHhhcCCCCEEEEEcCccchHHHHHhcCCCCCceEEEEeCChHHHHHHHHHHhhhhhcccccCCCCCCCccEEEEEc
Q 002218 704 YALQHIKESCATTLVDFGCGSGSLLDSLLDYPTALEKIVGVDISQKSLSRAAKIIHSKLSKKLDAAVPCTDVKSAVLFDG 783 (952)
Q Consensus 704 fVldlL~~~k~krVLDIGCGeG~ll~~LAr~g~~~~qVVGVDISeemLe~ArkrLsa~la~~~~~l~Pr~~~~nVtf~qG 783 (952)
.+.+.+...++.+|||||||+|.++..+++.+ .+|+|+|+|+.|++.|+++. .++++.++
T Consensus 48 ~l~~~l~~~~~~~vLDiGcG~G~~~~~l~~~~---~~v~gvD~s~~~~~~a~~~~-----------------~~~~~~~~ 107 (279)
T 3ccf_A 48 DLLQLLNPQPGEFILDLGCGTGQLTEKIAQSG---AEVLGTDNAATMIEKARQNY-----------------PHLHFDVA 107 (279)
T ss_dssp HHHHHHCCCTTCEEEEETCTTSHHHHHHHHTT---CEEEEEESCHHHHHHHHHHC-----------------TTSCEEEC
T ss_pred HHHHHhCCCCCCEEEEecCCCCHHHHHHHhCC---CeEEEEECCHHHHHHHHhhC-----------------CCCEEEEC
Confidence 34555555677899999999999999999855 79999999999999997652 36889999
Q ss_pred CccccCCCCCCccEEEEccccccCChhHHHHHHHHHHHccCCC-EEEEEecCCchh-HHHHhhccCccCCCCcchhhhcc
Q 002218 784 SITVFDSRLHGFDIGTCLEVIEHMEEDEASQFGNIVLSSFRPR-ILIVSTPNYEYN-AILQKSSSTIQEDDPDEKTQLQS 861 (952)
Q Consensus 784 Da~dLpf~d~sFDVVVcieVIEHL~dD~l~~L~eeI~RvLKPG-~LIISTPN~efN-~lf~~L~~~ta~eYPde~~g~~~ 861 (952)
|+.++++ .++||+|++..+++|++ +....+ +++.++|||| .+++.+|+.... .+...+.. .+ .. ..+
T Consensus 108 d~~~~~~-~~~fD~v~~~~~l~~~~-d~~~~l-~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~----~~--~~--~~~ 176 (279)
T 3ccf_A 108 DARNFRV-DKPLDAVFSNAMLHWVK-EPEAAI-ASIHQALKSGGRFVAEFGGKGNIKYILEALYN----AL--ET--LGI 176 (279)
T ss_dssp CTTTCCC-SSCEEEEEEESCGGGCS-CHHHHH-HHHHHHEEEEEEEEEEEECTTTTHHHHHHHHH----HH--HH--HTC
T ss_pred ChhhCCc-CCCcCEEEEcchhhhCc-CHHHHH-HHHHHhcCCCcEEEEEecCCcchHHHHHHHHH----HH--Hh--cCC
Confidence 9999886 57899999999999998 443444 5799999998 888888875331 22111100 00 00 001
Q ss_pred ccccCCCCccccCHHHHHHHHHHHHHHcCcEEEE
Q 002218 862 CKFRNHDHKFEWTRDQFNCWATELAARHNYSVEF 895 (952)
Q Consensus 862 ~~fRh~DHkFEWTReEFqsWae~La~q~GYsVef 895 (952)
.......+...++.+++.+ ++.+.||.+..
T Consensus 177 ~~~~~~~~~~~~~~~~~~~----~l~~aGf~~~~ 206 (279)
T 3ccf_A 177 HNPQALNPWYFPSIGEYVN----ILEKQGFDVTY 206 (279)
T ss_dssp CCGGGGCCCCCCCHHHHHH----HHHHHTEEEEE
T ss_pred ccccCcCceeCCCHHHHHH----HHHHcCCEEEE
Confidence 0011223345578888884 56677998753
No 49
>4hg2_A Methyltransferase type 11; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; HET: MES; 1.60A {Anaeromyxobacter dehalogenans}
Probab=99.53 E-value=1.5e-14 Score=152.14 Aligned_cols=114 Identities=16% Similarity=0.223 Sum_probs=91.3
Q ss_pred chhHHHHHHHHHHHhhcCCCCEEEEEcCccchHHHHHhcCCCCCceEEEEeCChHHHHHHHHHHhhhhhcccccCCCCCC
Q 002218 695 PPLSKQRVEYALQHIKESCATTLVDFGCGSGSLLDSLLDYPTALEKIVGVDISQKSLSRAAKIIHSKLSKKLDAAVPCTD 774 (952)
Q Consensus 695 PPL~~QR~efVldlL~~~k~krVLDIGCGeG~ll~~LAr~g~~~~qVVGVDISeemLe~ArkrLsa~la~~~~~l~Pr~~ 774 (952)
|....+-++++.+... ...+|||||||+|.++..|++.+ .+|+|||+|+.|++.|++
T Consensus 23 p~yp~~l~~~l~~~~~--~~~~vLDvGcGtG~~~~~l~~~~---~~v~gvD~s~~ml~~a~~------------------ 79 (257)
T 4hg2_A 23 PRYPRALFRWLGEVAP--ARGDALDCGCGSGQASLGLAEFF---ERVHAVDPGEAQIRQALR------------------ 79 (257)
T ss_dssp CCCCHHHHHHHHHHSS--CSSEEEEESCTTTTTHHHHHTTC---SEEEEEESCHHHHHTCCC------------------
T ss_pred CCcHHHHHHHHHHhcC--CCCCEEEEcCCCCHHHHHHHHhC---CEEEEEeCcHHhhhhhhh------------------
Confidence 3333445556665543 45799999999999999999988 799999999999987742
Q ss_pred CccEEEEEcCccccCCCCCCccEEEEccccccCChhHHHHHHHHHHHccCCC-EEEEEecC
Q 002218 775 VKSAVLFDGSITVFDSRLHGFDIGTCLEVIEHMEEDEASQFGNIVLSSFRPR-ILIVSTPN 834 (952)
Q Consensus 775 ~~nVtf~qGDa~dLpf~d~sFDVVVcieVIEHL~dD~l~~L~eeI~RvLKPG-~LIISTPN 834 (952)
.+++++.+++++++++++++||+|+|..++||++.+ .+.+++.|+|||| .+++.+.+
T Consensus 80 ~~~v~~~~~~~e~~~~~~~sfD~v~~~~~~h~~~~~---~~~~e~~rvLkpgG~l~~~~~~ 137 (257)
T 4hg2_A 80 HPRVTYAVAPAEDTGLPPASVDVAIAAQAMHWFDLD---RFWAELRRVARPGAVFAAVTYG 137 (257)
T ss_dssp CTTEEEEECCTTCCCCCSSCEEEEEECSCCTTCCHH---HHHHHHHHHEEEEEEEEEEEEC
T ss_pred cCCceeehhhhhhhcccCCcccEEEEeeehhHhhHH---HHHHHHHHHcCCCCEEEEEECC
Confidence 247999999999999999999999999999998733 3446799999999 66565543
No 50
>3sm3_A SAM-dependent methyltransferases; NESG, structural genomics, PSI-biology, protein structure in northeast structural genomics; 2.20A {Methanosarcina mazei}
Probab=99.52 E-value=1.1e-13 Score=137.76 Aligned_cols=167 Identities=14% Similarity=0.172 Sum_probs=114.1
Q ss_pred CCCEEEEEcCccchHHHHHhcCCCCCceEEEEeCChHHHHHHHHHHhhhhhcccccCCCCCCCccEEEEEcCccccCCCC
Q 002218 713 CATTLVDFGCGSGSLLDSLLDYPTALEKIVGVDISQKSLSRAAKIIHSKLSKKLDAAVPCTDVKSAVLFDGSITVFDSRL 792 (952)
Q Consensus 713 k~krVLDIGCGeG~ll~~LAr~g~~~~qVVGVDISeemLe~ArkrLsa~la~~~~~l~Pr~~~~nVtf~qGDa~dLpf~d 792 (952)
++.+|||+|||+|.++..+++.+ .+|+|+|+|+.+++.|++++..... ......++++.++|+.++++.+
T Consensus 30 ~~~~vLdiG~G~G~~~~~l~~~~---~~v~~vD~s~~~~~~a~~~~~~~~~-------~~~~~~~~~~~~~d~~~~~~~~ 99 (235)
T 3sm3_A 30 EDDEILDIGCGSGKISLELASKG---YSVTGIDINSEAIRLAETAARSPGL-------NQKTGGKAEFKVENASSLSFHD 99 (235)
T ss_dssp TTCEEEEETCTTSHHHHHHHHTT---CEEEEEESCHHHHHHHHHHTTCCSC-------CSSSSCEEEEEECCTTSCCSCT
T ss_pred CCCeEEEECCCCCHHHHHHHhCC---CeEEEEECCHHHHHHHHHHHHhcCC-------ccccCcceEEEEecccccCCCC
Confidence 67899999999999999999986 7999999999999999887532100 0011237899999999998888
Q ss_pred CCccEEEEccccccCCh-hHHHHHHHHHHHccCCC-EEEEEecCCchhH-HHHhhc----cCc--cCCCCcchhhhcccc
Q 002218 793 HGFDIGTCLEVIEHMEE-DEASQFGNIVLSSFRPR-ILIVSTPNYEYNA-ILQKSS----STI--QEDDPDEKTQLQSCK 863 (952)
Q Consensus 793 ~sFDVVVcieVIEHL~d-D~l~~L~eeI~RvLKPG-~LIISTPN~efN~-lf~~L~----~~t--a~eYPde~~g~~~~~ 863 (952)
+.||+|++..+++|+++ +....+.+++.++|||| .+++.+++..... .+.... ... ...+... ....
T Consensus 100 ~~~D~v~~~~~l~~~~~~~~~~~~l~~~~~~L~pgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~ 175 (235)
T 3sm3_A 100 SSFDFAVMQAFLTSVPDPKERSRIIKEVFRVLKPGAYLYLVEFGQNWHLKLYRKRYLHDFPITKEEGSFLAR----DPET 175 (235)
T ss_dssp TCEEEEEEESCGGGCCCHHHHHHHHHHHHHHEEEEEEEEEEEEBCCTTSHHHHHHHHHHHHHHCSTTEEEEE----CTTT
T ss_pred CceeEEEEcchhhcCCCHHHHHHHHHHHHHHcCCCeEEEEEECCcchhHHHHHHHhhhhccchhhhcceEec----cccc
Confidence 99999999999999974 33446667899999998 7888777654221 111100 000 0000000 0000
Q ss_pred ccCCCCccccCHHHHHHHHHHHHHHcCcEEEEEe
Q 002218 864 FRNHDHKFEWTRDQFNCWATELAARHNYSVEFSG 897 (952)
Q Consensus 864 fRh~DHkFEWTReEFqsWae~La~q~GYsVefsG 897 (952)
.....|...++++++. ++++++||.+.-.-
T Consensus 176 ~~~~~~~~~~~~~~l~----~ll~~aGf~~~~~~ 205 (235)
T 3sm3_A 176 GETEFIAHHFTEKELV----FLLTDCRFEIDYFR 205 (235)
T ss_dssp CCEEEEEECBCHHHHH----HHHHTTTEEEEEEE
T ss_pred CCcceeeEeCCHHHHH----HHHHHcCCEEEEEE
Confidence 0012345678999999 56778899986443
No 51
>3i9f_A Putative type 11 methyltransferase; structural genomics, PSI-2, protein structure initiative; 2.50A {Sulfolobus solfataricus}
Probab=99.52 E-value=3.1e-14 Score=136.36 Aligned_cols=135 Identities=19% Similarity=0.273 Sum_probs=103.7
Q ss_pred HHHHHhhcCCCCEEEEEcCccchHHHHHhcCCCCCceEEEEeCChHHHHHHHHHHhhhhhcccccCCCCCCCccEEEEEc
Q 002218 704 YALQHIKESCATTLVDFGCGSGSLLDSLLDYPTALEKIVGVDISQKSLSRAAKIIHSKLSKKLDAAVPCTDVKSAVLFDG 783 (952)
Q Consensus 704 fVldlL~~~k~krVLDIGCGeG~ll~~LAr~g~~~~qVVGVDISeemLe~ArkrLsa~la~~~~~l~Pr~~~~nVtf~qG 783 (952)
.+.+.+...++.+|||+|||+|.++..+++.+ .+|+|+|+++.+++.|+++. +++++.++
T Consensus 8 ~~~~~~~~~~~~~vLDiG~G~G~~~~~l~~~~---~~v~~vD~s~~~~~~a~~~~-----------------~~v~~~~~ 67 (170)
T 3i9f_A 8 EYLPNIFEGKKGVIVDYGCGNGFYCKYLLEFA---TKLYCIDINVIALKEVKEKF-----------------DSVITLSD 67 (170)
T ss_dssp TTHHHHHSSCCEEEEEETCTTCTTHHHHHTTE---EEEEEECSCHHHHHHHHHHC-----------------TTSEEESS
T ss_pred HHHHhcCcCCCCeEEEECCCCCHHHHHHHhhc---CeEEEEeCCHHHHHHHHHhC-----------------CCcEEEeC
Confidence 34455556677899999999999999999987 59999999999999998751 37889999
Q ss_pred CccccCCCCCCccEEEEccccccCChhHHHHHHHHHHHccCCC-EEEEEecCCchhHHHHhhccCccCCCCcchhhhccc
Q 002218 784 SITVFDSRLHGFDIGTCLEVIEHMEEDEASQFGNIVLSSFRPR-ILIVSTPNYEYNAILQKSSSTIQEDDPDEKTQLQSC 862 (952)
Q Consensus 784 Da~dLpf~d~sFDVVVcieVIEHL~dD~l~~L~eeI~RvLKPG-~LIISTPN~efN~lf~~L~~~ta~eYPde~~g~~~~ 862 (952)
| .++.++.||+|++..+++|++ +.. .+.+++.++|||| .+++.+++....
T Consensus 68 d---~~~~~~~~D~v~~~~~l~~~~-~~~-~~l~~~~~~L~pgG~l~~~~~~~~~~------------------------ 118 (170)
T 3i9f_A 68 P---KEIPDNSVDFILFANSFHDMD-DKQ-HVISEVKRILKDDGRVIIIDWRKENT------------------------ 118 (170)
T ss_dssp G---GGSCTTCEEEEEEESCSTTCS-CHH-HHHHHHHHHEEEEEEEEEEEECSSCC------------------------
T ss_pred C---CCCCCCceEEEEEccchhccc-CHH-HHHHHHHHhcCCCCEEEEEEcCcccc------------------------
Confidence 8 566778999999999999997 443 4456799999998 777776653211
Q ss_pred cccCCCCccccCHHHHHHHHHHHHHHcCcEEE
Q 002218 863 KFRNHDHKFEWTRDQFNCWATELAARHNYSVE 894 (952)
Q Consensus 863 ~fRh~DHkFEWTReEFqsWae~La~q~GYsVe 894 (952)
...+.+...++++++.+|++ ||.+.
T Consensus 119 -~~~~~~~~~~~~~~~~~~l~------Gf~~~ 143 (170)
T 3i9f_A 119 -GIGPPLSIRMDEKDYMGWFS------NFVVE 143 (170)
T ss_dssp -SSSSCGGGCCCHHHHHHHTT------TEEEE
T ss_pred -ccCchHhhhcCHHHHHHHHh------CcEEE
Confidence 01122344589999996543 88874
No 52
>1ri5_A MRNA capping enzyme; methyltransferase, M7G, messenger RNA CAP, structural genomics, PSI, protein structure initiative; 2.10A {Encephalitozoon cuniculi} SCOP: c.66.1.34 PDB: 1ri2_A* 1ri3_A* 1ri1_A* 1ri4_A 1z3c_A* 2hv9_A*
Probab=99.52 E-value=9.6e-14 Score=143.52 Aligned_cols=112 Identities=16% Similarity=0.171 Sum_probs=92.1
Q ss_pred CCCCEEEEEcCccchHHHHHhcCCCCCceEEEEeCChHHHHHHHHHHhhhhhcccccCCCCCCCccEEEEEcCccccCC-
Q 002218 712 SCATTLVDFGCGSGSLLDSLLDYPTALEKIVGVDISQKSLSRAAKIIHSKLSKKLDAAVPCTDVKSAVLFDGSITVFDS- 790 (952)
Q Consensus 712 ~k~krVLDIGCGeG~ll~~LAr~g~~~~qVVGVDISeemLe~ArkrLsa~la~~~~~l~Pr~~~~nVtf~qGDa~dLpf- 790 (952)
.++.+|||||||+|.++..+++.+. .+|+|+|+|+.+++.|++++... ....++++.++|+.++++
T Consensus 63 ~~~~~vLDiGcG~G~~~~~l~~~~~--~~v~gvD~s~~~~~~a~~~~~~~-----------~~~~~v~~~~~d~~~~~~~ 129 (298)
T 1ri5_A 63 KRGDSVLDLGCGKGGDLLKYERAGI--GEYYGVDIAEVSINDARVRARNM-----------KRRFKVFFRAQDSYGRHMD 129 (298)
T ss_dssp CTTCEEEEETCTTTTTHHHHHHHTC--SEEEEEESCHHHHHHHHHHHHTS-----------CCSSEEEEEESCTTTSCCC
T ss_pred CCCCeEEEECCCCCHHHHHHHHCCC--CEEEEEECCHHHHHHHHHHHHhc-----------CCCccEEEEECCccccccC
Confidence 4678999999999999999888752 59999999999999999876421 122479999999999887
Q ss_pred CCCCccEEEEcccccc--CChhHHHHHHHHHHHccCCC-EEEEEecCCc
Q 002218 791 RLHGFDIGTCLEVIEH--MEEDEASQFGNIVLSSFRPR-ILIVSTPNYE 836 (952)
Q Consensus 791 ~d~sFDVVVcieVIEH--L~dD~l~~L~eeI~RvLKPG-~LIISTPN~e 836 (952)
..+.||+|++..+++| ...+....+.+++.++|||| .+++.+|+.+
T Consensus 130 ~~~~fD~v~~~~~l~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~ 178 (298)
T 1ri5_A 130 LGKEFDVISSQFSFHYAFSTSESLDIAQRNIARHLRPGGYFIMTVPSRD 178 (298)
T ss_dssp CSSCEEEEEEESCGGGGGSSHHHHHHHHHHHHHTEEEEEEEEEEEECHH
T ss_pred CCCCcCEEEECchhhhhcCCHHHHHHHHHHHHHhcCCCCEEEEEECCHH
Confidence 5788999999999988 34445556667899999999 8899999853
No 53
>3d2l_A SAM-dependent methyltransferase; ZP_00538691.1, structural G joint center for structural genomics, JCSG; HET: MSE; 1.90A {Exiguobacterium sibiricum 255-15}
Probab=99.52 E-value=3.6e-13 Score=135.20 Aligned_cols=118 Identities=18% Similarity=0.256 Sum_probs=94.3
Q ss_pred HHHHHHHHHHHhhcCCCCEEEEEcCccchHHHHHhcCCCCCceEEEEeCChHHHHHHHHHHhhhhhcccccCCCCCCCcc
Q 002218 698 SKQRVEYALQHIKESCATTLVDFGCGSGSLLDSLLDYPTALEKIVGVDISQKSLSRAAKIIHSKLSKKLDAAVPCTDVKS 777 (952)
Q Consensus 698 ~~QR~efVldlL~~~k~krVLDIGCGeG~ll~~LAr~g~~~~qVVGVDISeemLe~ArkrLsa~la~~~~~l~Pr~~~~n 777 (952)
+....+++.+.+. ++.+|||+|||+|.++..+++. .+|+|+|+|+.+++.|++++... + .+
T Consensus 20 ~~~~~~~~~~~~~--~~~~vLdiG~G~G~~~~~l~~~----~~v~~vD~s~~~~~~a~~~~~~~------------~-~~ 80 (243)
T 3d2l_A 20 YPEWVAWVLEQVE--PGKRIADIGCGTGTATLLLADH----YEVTGVDLSEEMLEIAQEKAMET------------N-RH 80 (243)
T ss_dssp HHHHHHHHHHHSC--TTCEEEEESCTTCHHHHHHTTT----SEEEEEESCHHHHHHHHHHHHHT------------T-CC
T ss_pred HHHHHHHHHHHcC--CCCeEEEecCCCCHHHHHHhhC----CeEEEEECCHHHHHHHHHhhhhc------------C-Cc
Confidence 4444556666554 4589999999999999999875 58999999999999998876421 1 47
Q ss_pred EEEEEcCccccCCCCCCccEEEEcc-ccccCC-hhHHHHHHHHHHHccCCC-EEEEEecCC
Q 002218 778 AVLFDGSITVFDSRLHGFDIGTCLE-VIEHME-EDEASQFGNIVLSSFRPR-ILIVSTPNY 835 (952)
Q Consensus 778 Vtf~qGDa~dLpf~d~sFDVVVcie-VIEHL~-dD~l~~L~eeI~RvLKPG-~LIISTPN~ 835 (952)
+++.++|+.++++. ++||+|++.. +++|+. .+....+.+++.++|+|| .+++.+++.
T Consensus 81 ~~~~~~d~~~~~~~-~~fD~v~~~~~~~~~~~~~~~~~~~l~~~~~~L~pgG~l~~~~~~~ 140 (243)
T 3d2l_A 81 VDFWVQDMRELELP-EPVDAITILCDSLNYLQTEADVKQTFDSAARLLTDGGKLLFDVHSP 140 (243)
T ss_dssp CEEEECCGGGCCCS-SCEEEEEECTTGGGGCCSHHHHHHHHHHHHHHEEEEEEEEEEEECH
T ss_pred eEEEEcChhhcCCC-CCcCEEEEeCCchhhcCCHHHHHHHHHHHHHhcCCCeEEEEEcCCH
Confidence 89999999988765 7899999986 999994 344556667899999999 888888874
No 54
>2p35_A Trans-aconitate 2-methyltransferase; SAM dependent methyltrans agrobacterium tumefaciens, structural genomics, PSI-2; HET: SAH; 1.95A {Agrobacterium tumefaciens str}
Probab=99.51 E-value=5.3e-14 Score=142.94 Aligned_cols=156 Identities=15% Similarity=0.191 Sum_probs=110.4
Q ss_pred HHHHHhhcCCCCEEEEEcCccchHHHHHhcCCCCCceEEEEeCChHHHHHHHHHHhhhhhcccccCCCCCCCccEEEEEc
Q 002218 704 YALQHIKESCATTLVDFGCGSGSLLDSLLDYPTALEKIVGVDISQKSLSRAAKIIHSKLSKKLDAAVPCTDVKSAVLFDG 783 (952)
Q Consensus 704 fVldlL~~~k~krVLDIGCGeG~ll~~LAr~g~~~~qVVGVDISeemLe~ArkrLsa~la~~~~~l~Pr~~~~nVtf~qG 783 (952)
.+++.+...++.+|||||||+|.++..+++.. +..+|+|+|+|+.|++.|+++. .++++.++
T Consensus 24 ~l~~~~~~~~~~~vLdiG~G~G~~~~~l~~~~-~~~~v~~~D~s~~~~~~a~~~~-----------------~~~~~~~~ 85 (259)
T 2p35_A 24 DLLAQVPLERVLNGYDLGCGPGNSTELLTDRY-GVNVITGIDSDDDMLEKAADRL-----------------PNTNFGKA 85 (259)
T ss_dssp HHHTTCCCSCCSSEEEETCTTTHHHHHHHHHH-CTTSEEEEESCHHHHHHHHHHS-----------------TTSEEEEC
T ss_pred HHHHhcCCCCCCEEEEecCcCCHHHHHHHHhC-CCCEEEEEECCHHHHHHHHHhC-----------------CCcEEEEC
Confidence 34455555577899999999999999998873 2278999999999999997651 36899999
Q ss_pred CccccCCCCCCccEEEEccccccCChhHHHHHHHHHHHccCCC-EEEEEecCCchhH---HHHhhccCccCCCCcchhhh
Q 002218 784 SITVFDSRLHGFDIGTCLEVIEHMEEDEASQFGNIVLSSFRPR-ILIVSTPNYEYNA---ILQKSSSTIQEDDPDEKTQL 859 (952)
Q Consensus 784 Da~dLpf~d~sFDVVVcieVIEHL~dD~l~~L~eeI~RvLKPG-~LIISTPN~efN~---lf~~L~~~ta~eYPde~~g~ 859 (952)
|+.+++ .+++||+|++..+++|++ +.... .+++.++|||| .+++.+|+..... .+..+.. ...
T Consensus 86 d~~~~~-~~~~fD~v~~~~~l~~~~-~~~~~-l~~~~~~L~pgG~l~~~~~~~~~~~~~~~~~~~~~--~~~-------- 152 (259)
T 2p35_A 86 DLATWK-PAQKADLLYANAVFQWVP-DHLAV-LSQLMDQLESGGVLAVQMPDNLQEPTHIAMHETAD--GGP-------- 152 (259)
T ss_dssp CTTTCC-CSSCEEEEEEESCGGGST-THHHH-HHHHGGGEEEEEEEEEEEECCTTSHHHHHHHHHHH--HST--------
T ss_pred ChhhcC-ccCCcCEEEEeCchhhCC-CHHHH-HHHHHHhcCCCeEEEEEeCCCCCcHHHHHHHHHhc--Ccc--------
Confidence 999988 678999999999999997 44344 45799999999 8888888653221 1221110 000
Q ss_pred cccc-ccC--CCCccccCHHHHHHHHHHHHHHcCcEEEE
Q 002218 860 QSCK-FRN--HDHKFEWTRDQFNCWATELAARHNYSVEF 895 (952)
Q Consensus 860 ~~~~-fRh--~DHkFEWTReEFqsWae~La~q~GYsVef 895 (952)
|.. +.. ..+...++.+++.+ ++.+.||.|+.
T Consensus 153 -~~~~~~~~~~~~~~~~~~~~~~~----~l~~aGf~v~~ 186 (259)
T 2p35_A 153 -WKDAFSGGGLRRKPLPPPSDYFN----ALSPKSSRVDV 186 (259)
T ss_dssp -TGGGC-------CCCCCHHHHHH----HHGGGEEEEEE
T ss_pred -hHHHhccccccccCCCCHHHHHH----HHHhcCCceEE
Confidence 111 111 23455688888884 56778997753
No 55
>3bkx_A SAM-dependent methyltransferase; YP_807781.1, cyclopropane-fatty-acyl-phospholipid synthase-L protein, methyltransferase domain; 1.85A {Lactobacillus casei}
Probab=99.51 E-value=2.6e-13 Score=139.56 Aligned_cols=168 Identities=11% Similarity=0.020 Sum_probs=113.2
Q ss_pred HHHHHHHhhcCCCCEEEEEcCccchHHHHHhcCCCCCceEEEEeCChH------HHHHHHHHHhhhhhcccccCCCCCCC
Q 002218 702 VEYALQHIKESCATTLVDFGCGSGSLLDSLLDYPTALEKIVGVDISQK------SLSRAAKIIHSKLSKKLDAAVPCTDV 775 (952)
Q Consensus 702 ~efVldlL~~~k~krVLDIGCGeG~ll~~LAr~g~~~~qVVGVDISee------mLe~ArkrLsa~la~~~~~l~Pr~~~ 775 (952)
+..+.+.+...++.+|||||||+|.++..+++..++..+|+|+|+|+. +++.|++++... ...
T Consensus 32 ~~~l~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~g~~~~v~gvD~s~~~~~~~~~~~~a~~~~~~~-----------~~~ 100 (275)
T 3bkx_A 32 RLAIAEAWQVKPGEKILEIGCGQGDLSAVLADQVGSSGHVTGIDIASPDYGAPLTLGQAWNHLLAG-----------PLG 100 (275)
T ss_dssp HHHHHHHHTCCTTCEEEEESCTTSHHHHHHHHHHCTTCEEEEECSSCTTCCSSSCHHHHHHHHHTS-----------TTG
T ss_pred HHHHHHHcCCCCCCEEEEeCCCCCHHHHHHHHHhCCCCEEEEEECCccccccHHHHHHHHHHHHhc-----------CCC
Confidence 344556666667889999999999999999987424479999999997 999998876421 122
Q ss_pred ccEEEEEcC---ccccCCCCCCccEEEEccccccCChhHHHHHHHHHHHccCCC-EEEEEecCCchh------HHHHhhc
Q 002218 776 KSAVLFDGS---ITVFDSRLHGFDIGTCLEVIEHMEEDEASQFGNIVLSSFRPR-ILIVSTPNYEYN------AILQKSS 845 (952)
Q Consensus 776 ~nVtf~qGD---a~dLpf~d~sFDVVVcieVIEHL~dD~l~~L~eeI~RvLKPG-~LIISTPN~efN------~lf~~L~ 845 (952)
.++++.++| ...+++.++.||+|++..+++|+++.. . +.+.+.++++|| .+++.++..... ..+..+.
T Consensus 101 ~~v~~~~~d~~~~~~~~~~~~~fD~v~~~~~l~~~~~~~-~-~~~~~~~l~~~gG~l~~~~~~~~~~~~~~~~~~~~~~~ 178 (275)
T 3bkx_A 101 DRLTVHFNTNLSDDLGPIADQHFDRVVLAHSLWYFASAN-A-LALLFKNMAAVCDHVDVAEWSMQPTALDQIGHLQAAMI 178 (275)
T ss_dssp GGEEEECSCCTTTCCGGGTTCCCSEEEEESCGGGSSCHH-H-HHHHHHHHTTTCSEEEEEEECSSCSSGGGHHHHHHHHH
T ss_pred CceEEEECChhhhccCCCCCCCEEEEEEccchhhCCCHH-H-HHHHHHHHhCCCCEEEEEEecCCCCchhhhhHHHHHHH
Confidence 479999998 455666778999999999999999554 3 566677777767 777776543211 1111110
Q ss_pred cCccCCCCcchhhhccccccCCCCccccCHHHHHHHHHHHHHHcCcEEEE
Q 002218 846 STIQEDDPDEKTQLQSCKFRNHDHKFEWTRDQFNCWATELAARHNYSVEF 895 (952)
Q Consensus 846 ~~ta~eYPde~~g~~~~~fRh~DHkFEWTReEFqsWae~La~q~GYsVef 895 (952)
. . .+ ..........+...++.+++.+| +++.||.+.-
T Consensus 179 ~--~-~~------~~~~~~~~~~~~~~~s~~~l~~~----l~~aGf~~~~ 215 (275)
T 3bkx_A 179 Q--G-LL------YAIAPSDVANIRTLITPDTLAQI----AHDNTWTYTA 215 (275)
T ss_dssp H--H-HH------HHHSCCTTCSCCCCCCHHHHHHH----HHHHTCEEEE
T ss_pred H--H-HH------hhccccccccccccCCHHHHHHH----HHHCCCeeEE
Confidence 0 0 00 00011112344556899999855 5667998854
No 56
>3m70_A Tellurite resistance protein TEHB homolog; structural genomics, PSI-2, protein ST initiative; 1.95A {Haemophilus influenzae}
Probab=99.51 E-value=1.4e-13 Score=143.24 Aligned_cols=112 Identities=11% Similarity=0.093 Sum_probs=94.0
Q ss_pred HHHHhhcCCCCEEEEEcCccchHHHHHhcCCCCCceEEEEeCChHHHHHHHHHHhhhhhcccccCCCCCCCccEEEEEcC
Q 002218 705 ALQHIKESCATTLVDFGCGSGSLLDSLLDYPTALEKIVGVDISQKSLSRAAKIIHSKLSKKLDAAVPCTDVKSAVLFDGS 784 (952)
Q Consensus 705 VldlL~~~k~krVLDIGCGeG~ll~~LAr~g~~~~qVVGVDISeemLe~ArkrLsa~la~~~~~l~Pr~~~~nVtf~qGD 784 (952)
+.+.+...++.+|||+|||+|.++..|++.+ .+|+|+|+|+.+++.|++++.. .+. ++++.++|
T Consensus 112 ~~~~~~~~~~~~vLD~GcG~G~~~~~l~~~g---~~v~~vD~s~~~~~~a~~~~~~------------~~~-~~~~~~~d 175 (286)
T 3m70_A 112 VVDAAKIISPCKVLDLGCGQGRNSLYLSLLG---YDVTSWDHNENSIAFLNETKEK------------ENL-NISTALYD 175 (286)
T ss_dssp HHHHHHHSCSCEEEEESCTTCHHHHHHHHTT---CEEEEEESCHHHHHHHHHHHHH------------TTC-CEEEEECC
T ss_pred HHHHhhccCCCcEEEECCCCCHHHHHHHHCC---CeEEEEECCHHHHHHHHHHHHH------------cCC-ceEEEEec
Confidence 3344455578999999999999999999987 6999999999999999887642 123 89999999
Q ss_pred ccccCCCCCCccEEEEccccccCChhHHHHHHHHHHHccCCC-EEEEEec
Q 002218 785 ITVFDSRLHGFDIGTCLEVIEHMEEDEASQFGNIVLSSFRPR-ILIVSTP 833 (952)
Q Consensus 785 a~dLpf~d~sFDVVVcieVIEHL~dD~l~~L~eeI~RvLKPG-~LIISTP 833 (952)
+.+++. .+.||+|++..+++|++++....+.+++.++|+|| .+++.+.
T Consensus 176 ~~~~~~-~~~fD~i~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~ 224 (286)
T 3m70_A 176 INAANI-QENYDFIVSTVVFMFLNRERVPSIIKNMKEHTNVGGYNLIVAA 224 (286)
T ss_dssp GGGCCC-CSCEEEEEECSSGGGSCGGGHHHHHHHHHHTEEEEEEEEEEEE
T ss_pred cccccc-cCCccEEEEccchhhCCHHHHHHHHHHHHHhcCCCcEEEEEEe
Confidence 999877 78899999999999998777777778899999998 5555544
No 57
>3e8s_A Putative SAM dependent methyltransferase; NP_744700.1, structural genomics, joint center for structural genom JCSG; HET: SAH; 2.10A {Pseudomonas putida KT2440}
Probab=99.51 E-value=1e-13 Score=136.94 Aligned_cols=157 Identities=17% Similarity=0.099 Sum_probs=108.9
Q ss_pred HHHHHhhcCCCCEEEEEcCccchHHHHHhcCCCCCceEEEEeCChHHHHHHHHHHhhhhhcccccCCCCCCCccEEEEEc
Q 002218 704 YALQHIKESCATTLVDFGCGSGSLLDSLLDYPTALEKIVGVDISQKSLSRAAKIIHSKLSKKLDAAVPCTDVKSAVLFDG 783 (952)
Q Consensus 704 fVldlL~~~k~krVLDIGCGeG~ll~~LAr~g~~~~qVVGVDISeemLe~ArkrLsa~la~~~~~l~Pr~~~~nVtf~qG 783 (952)
.+.+.+...++.+|||||||+|.++..+++.+ .+|+|+|+|+.+++.|+++ .++.+.++
T Consensus 43 ~~~~~~~~~~~~~vLdiG~G~G~~~~~l~~~~---~~v~~vD~s~~~~~~a~~~------------------~~~~~~~~ 101 (227)
T 3e8s_A 43 AILLAILGRQPERVLDLGCGEGWLLRALADRG---IEAVGVDGDRTLVDAARAA------------------GAGEVHLA 101 (227)
T ss_dssp HHHHHHHHTCCSEEEEETCTTCHHHHHHHTTT---CEEEEEESCHHHHHHHHHT------------------CSSCEEEC
T ss_pred HHHHHhhcCCCCEEEEeCCCCCHHHHHHHHCC---CEEEEEcCCHHHHHHHHHh------------------cccccchh
Confidence 45555566677999999999999999999986 7999999999999999763 25677888
Q ss_pred Ccccc---CCCCC-CccEEEEccccccCChhHHHHHHHHHHHccCCC-EEEEEecCCchhHHHHhhccCccCCCCcchhh
Q 002218 784 SITVF---DSRLH-GFDIGTCLEVIEHMEEDEASQFGNIVLSSFRPR-ILIVSTPNYEYNAILQKSSSTIQEDDPDEKTQ 858 (952)
Q Consensus 784 Da~dL---pf~d~-sFDVVVcieVIEHL~dD~l~~L~eeI~RvLKPG-~LIISTPN~efN~lf~~L~~~ta~eYPde~~g 858 (952)
++.++ ++... +||+|++..+++ .. +.. .+.+++.++|||| .+++.+++......- .+ ...+..
T Consensus 102 ~~~~~~~~~~~~~~~fD~v~~~~~l~-~~-~~~-~~l~~~~~~L~pgG~l~~~~~~~~~~~~~-~~----~~~~~~---- 169 (227)
T 3e8s_A 102 SYAQLAEAKVPVGKDYDLICANFALL-HQ-DII-ELLSAMRTLLVPGGALVIQTLHPWSVADG-DY----QDGWRE---- 169 (227)
T ss_dssp CHHHHHTTCSCCCCCEEEEEEESCCC-SS-CCH-HHHHHHHHTEEEEEEEEEEECCTTTTCTT-CC----SCEEEE----
T ss_pred hHHhhcccccccCCCccEEEECchhh-hh-hHH-HHHHHHHHHhCCCeEEEEEecCccccCcc-cc----ccccch----
Confidence 88776 44444 599999999999 43 333 4446799999998 888999876432110 00 000000
Q ss_pred hcccccc---CCCCccccCHHHHHHHHHHHHHHcCcEEEEEe
Q 002218 859 LQSCKFR---NHDHKFEWTRDQFNCWATELAARHNYSVEFSG 897 (952)
Q Consensus 859 ~~~~~fR---h~DHkFEWTReEFqsWae~La~q~GYsVefsG 897 (952)
..+..+. ...+...++.+++. ++++++||.+.-.-
T Consensus 170 ~~~~~~~~~~~~~~~~~~~~~~~~----~~l~~aGf~~~~~~ 207 (227)
T 3e8s_A 170 ESFAGFAGDWQPMPWYFRTLASWL----NALDMAGLRLVSLQ 207 (227)
T ss_dssp ECCTTSSSCCCCEEEEECCHHHHH----HHHHHTTEEEEEEE
T ss_pred hhhhccccCcccceEEEecHHHHH----HHHHHcCCeEEEEe
Confidence 0011111 12334567999988 56788999986543
No 58
>2aot_A HMT, histamine N-methyltransferase; classic methyltransferase fold, protein-drug complex; HET: CSO 2PM SAH; 1.90A {Homo sapiens} SCOP: c.66.1.19 PDB: 1jqd_A* 2aou_A* 2aov_A* 2aox_A* 1jqe_A* 2aow_A*
Probab=99.50 E-value=2.4e-13 Score=142.88 Aligned_cols=149 Identities=10% Similarity=0.166 Sum_probs=98.7
Q ss_pred CCCEEEEEcCccchHHH----HHhcCCCCCce--EEEEeCChHHHHHHHHHHhhhhhcccccCCCCCCCccE--EEEEcC
Q 002218 713 CATTLVDFGCGSGSLLD----SLLDYPTALEK--IVGVDISQKSLSRAAKIIHSKLSKKLDAAVPCTDVKSA--VLFDGS 784 (952)
Q Consensus 713 k~krVLDIGCGeG~ll~----~LAr~g~~~~q--VVGVDISeemLe~ArkrLsa~la~~~~~l~Pr~~~~nV--tf~qGD 784 (952)
++.+|||||||+|.++. .++..+ +... ++|+|+|++|++.|++++... .+..++ .+.+++
T Consensus 52 ~~~~VLDiG~GtG~~~~~~l~~l~~~~-~~~~v~~~~vD~S~~ml~~a~~~~~~~-----------~~~~~v~~~~~~~~ 119 (292)
T 2aot_A 52 SEIKILSIGGGAGEIDLQILSKVQAQY-PGVCINNEVVEPSAEQIAKYKELVAKT-----------SNLENVKFAWHKET 119 (292)
T ss_dssp SEEEEEEETCTTSHHHHHHHHHHHHHS-TTCEEEEEEECSCHHHHHHHHHHHHTC-----------SSCTTEEEEEECSC
T ss_pred CCCeEEEEcCCCCHHHHHHHHHHHhhC-CCceeeEEEEeCCHHHHHHHHHHHHhc-----------cCCCcceEEEEecc
Confidence 45699999999997654 333322 1243 499999999999998876421 122344 556777
Q ss_pred ccccC------CCCCCccEEEEccccccCChhHHHHHHHHHHHccCCC-EEEEEecCCc--hhHHHHhhccCccCCCCcc
Q 002218 785 ITVFD------SRLHGFDIGTCLEVIEHMEEDEASQFGNIVLSSFRPR-ILIVSTPNYE--YNAILQKSSSTIQEDDPDE 855 (952)
Q Consensus 785 a~dLp------f~d~sFDVVVcieVIEHL~dD~l~~L~eeI~RvLKPG-~LIISTPN~e--fN~lf~~L~~~ta~eYPde 855 (952)
+.+++ +.+++||+|++..++||++ +....+ +++.++|||| .+++.+++.+ +..++...
T Consensus 120 ~~~~~~~~~~~~~~~~fD~V~~~~~l~~~~-d~~~~l-~~~~r~LkpgG~l~i~~~~~~~~~~~~~~~~----------- 186 (292)
T 2aot_A 120 SSEYQSRMLEKKELQKWDFIHMIQMLYYVK-DIPATL-KFFHSLLGTNAKMLIIVVSGSSGWDKLWKKY----------- 186 (292)
T ss_dssp HHHHHHHHHTTTCCCCEEEEEEESCGGGCS-CHHHHH-HHHHHTEEEEEEEEEEEECTTSHHHHHHHHH-----------
T ss_pred hhhhhhhhccccCCCceeEEEEeeeeeecC-CHHHHH-HHHHHHcCCCcEEEEEEecCCccHHHHHHHH-----------
Confidence 76654 4578999999999999998 444455 5799999999 6766665532 22233221
Q ss_pred hhhhccccccCCCCccccCHHHHHHHHHHHHHHcCcEEEE
Q 002218 856 KTQLQSCKFRNHDHKFEWTRDQFNCWATELAARHNYSVEF 895 (952)
Q Consensus 856 ~~g~~~~~fRh~DHkFEWTReEFqsWae~La~q~GYsVef 895 (952)
+..++...|...++.+++.+ ++.++||.+.-
T Consensus 187 -----~~~~~~~~~~~~~~~~~~~~----~l~~aGf~~~~ 217 (292)
T 2aot_A 187 -----GSRFPQDDLCQYITSDDLTQ----MLDNLGLKYEC 217 (292)
T ss_dssp -----GGGSCCCTTCCCCCHHHHHH----HHHHHTCCEEE
T ss_pred -----HHhccCCCcccCCCHHHHHH----HHHHCCCceEE
Confidence 11122234556688988885 45677997753
No 59
>2p8j_A S-adenosylmethionine-dependent methyltransferase; NP_349143.1; HET: PGE GOL; 2.00A {Clostridium acetobutylicum}
Probab=99.48 E-value=1.9e-13 Score=134.46 Aligned_cols=108 Identities=16% Similarity=0.226 Sum_probs=89.7
Q ss_pred CCCCEEEEEcCccchH-HHHHhcCCCCCceEEEEeCChHHHHHHHHHHhhhhhcccccCCCCCCCccEEEEEcCccccCC
Q 002218 712 SCATTLVDFGCGSGSL-LDSLLDYPTALEKIVGVDISQKSLSRAAKIIHSKLSKKLDAAVPCTDVKSAVLFDGSITVFDS 790 (952)
Q Consensus 712 ~k~krVLDIGCGeG~l-l~~LAr~g~~~~qVVGVDISeemLe~ArkrLsa~la~~~~~l~Pr~~~~nVtf~qGDa~dLpf 790 (952)
.++.+|||+|||+|.+ +..+++.+ .+|+|+|+|+.+++.|++++... + .++++.++|+.++++
T Consensus 22 ~~~~~vLDiGcG~G~~~~~~~~~~~---~~v~~vD~s~~~~~~a~~~~~~~------------~-~~~~~~~~d~~~~~~ 85 (209)
T 2p8j_A 22 NLDKTVLDCGAGGDLPPLSIFVEDG---YKTYGIEISDLQLKKAENFSREN------------N-FKLNISKGDIRKLPF 85 (209)
T ss_dssp SSCSEEEEESCCSSSCTHHHHHHTT---CEEEEEECCHHHHHHHHHHHHHH------------T-CCCCEEECCTTSCCS
T ss_pred CCCCEEEEECCCCCHHHHHHHHhCC---CEEEEEECCHHHHHHHHHHHHhc------------C-CceEEEECchhhCCC
Confidence 4578999999999998 45555655 79999999999999998876421 1 368899999999888
Q ss_pred CCCCccEEEEccccccCChhHHHHHHHHHHHccCCC-EEEEEecCC
Q 002218 791 RLHGFDIGTCLEVIEHMEEDEASQFGNIVLSSFRPR-ILIVSTPNY 835 (952)
Q Consensus 791 ~d~sFDVVVcieVIEHL~dD~l~~L~eeI~RvLKPG-~LIISTPN~ 835 (952)
.++.||+|++..+++|++.+....+.+++.++|||| .+++.+++.
T Consensus 86 ~~~~fD~v~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~ 131 (209)
T 2p8j_A 86 KDESMSFVYSYGTIFHMRKNDVKEAIDEIKRVLKPGGLACINFLTT 131 (209)
T ss_dssp CTTCEEEEEECSCGGGSCHHHHHHHHHHHHHHEEEEEEEEEEEEET
T ss_pred CCCceeEEEEcChHHhCCHHHHHHHHHHHHHHcCCCcEEEEEEecc
Confidence 888999999999999997666666777899999998 788877764
No 60
>3mgg_A Methyltransferase; NYSGXRC, PSI-II, protein structure initiative, structural genomics, NEW YORK SGX research center for structural genomics; 1.86A {Methanosarcina mazei}
Probab=99.47 E-value=1.6e-13 Score=141.63 Aligned_cols=109 Identities=20% Similarity=0.269 Sum_probs=92.3
Q ss_pred CCCCEEEEEcCccchHHHHHhcCCCCCceEEEEeCChHHHHHHHHHHhhhhhcccccCCCCCCCccEEEEEcCccccCCC
Q 002218 712 SCATTLVDFGCGSGSLLDSLLDYPTALEKIVGVDISQKSLSRAAKIIHSKLSKKLDAAVPCTDVKSAVLFDGSITVFDSR 791 (952)
Q Consensus 712 ~k~krVLDIGCGeG~ll~~LAr~g~~~~qVVGVDISeemLe~ArkrLsa~la~~~~~l~Pr~~~~nVtf~qGDa~dLpf~ 791 (952)
.++.+|||||||+|.++..+++.+ +..+|+|+|+|+.+++.|++++.. .+..++++.++|+.++++.
T Consensus 36 ~~~~~vLDiG~G~G~~~~~l~~~~-~~~~v~~vD~s~~~~~~a~~~~~~------------~~~~~~~~~~~d~~~~~~~ 102 (276)
T 3mgg_A 36 PPGAKVLEAGCGIGAQTVILAKNN-PDAEITSIDISPESLEKARENTEK------------NGIKNVKFLQANIFSLPFE 102 (276)
T ss_dssp CTTCEEEETTCTTSHHHHHHHHHC-TTSEEEEEESCHHHHHHHHHHHHH------------TTCCSEEEEECCGGGCCSC
T ss_pred CCCCeEEEecCCCCHHHHHHHHhC-CCCEEEEEECCHHHHHHHHHHHHH------------cCCCCcEEEEcccccCCCC
Confidence 467899999999999999999875 347999999999999999887653 2345799999999999988
Q ss_pred CCCccEEEEccccccCChhHHHHHHHHHHHccCCC-EEEEEecCC
Q 002218 792 LHGFDIGTCLEVIEHMEEDEASQFGNIVLSSFRPR-ILIVSTPNY 835 (952)
Q Consensus 792 d~sFDVVVcieVIEHL~dD~l~~L~eeI~RvLKPG-~LIISTPN~ 835 (952)
+++||+|++..+++|+++.. .+.+++.++|||| .+++.+++.
T Consensus 103 ~~~fD~v~~~~~l~~~~~~~--~~l~~~~~~L~pgG~l~~~~~~~ 145 (276)
T 3mgg_A 103 DSSFDHIFVCFVLEHLQSPE--EALKSLKKVLKPGGTITVIEGDH 145 (276)
T ss_dssp TTCEEEEEEESCGGGCSCHH--HHHHHHHHHEEEEEEEEEEEECG
T ss_pred CCCeeEEEEechhhhcCCHH--HHHHHHHHHcCCCcEEEEEEcCC
Confidence 89999999999999998443 4446799999999 777777653
No 61
>4e2x_A TCAB9; kijanose, tetronitrose, tetradeoxy sugar, sugar methylation, transferase; HET: SAH TYD; 1.40A {Micromonospora chalcea} PDB: 3ndi_A* 3ndj_A* 4e32_A* 4e33_A* 4e2y_A* 4e31_A* 4e2w_A* 4e2z_A* 4e30_A*
Probab=99.47 E-value=4.7e-14 Score=155.26 Aligned_cols=151 Identities=14% Similarity=0.157 Sum_probs=107.8
Q ss_pred HHHHhhcCCCCEEEEEcCccchHHHHHhcCCCCCceEEEEeCChHHHHHHHHHHhhhhhcccccCCCCCCCccEEEEEcC
Q 002218 705 ALQHIKESCATTLVDFGCGSGSLLDSLLDYPTALEKIVGVDISQKSLSRAAKIIHSKLSKKLDAAVPCTDVKSAVLFDGS 784 (952)
Q Consensus 705 VldlL~~~k~krVLDIGCGeG~ll~~LAr~g~~~~qVVGVDISeemLe~ArkrLsa~la~~~~~l~Pr~~~~nVtf~qGD 784 (952)
+.+.+...++.+|||||||+|.++..|++.+ .+|+|+|+|+.+++.|+++- . ......+..++
T Consensus 99 l~~~~~~~~~~~VLDiGcG~G~~~~~l~~~g---~~v~gvD~s~~~~~~a~~~~---~-----------~~~~~~~~~~~ 161 (416)
T 4e2x_A 99 FLATELTGPDPFIVEIGCNDGIMLRTIQEAG---VRHLGFEPSSGVAAKAREKG---I-----------RVRTDFFEKAT 161 (416)
T ss_dssp HHHTTTCSSSCEEEEETCTTTTTHHHHHHTT---CEEEEECCCHHHHHHHHTTT---C-----------CEECSCCSHHH
T ss_pred HHHHhCCCCCCEEEEecCCCCHHHHHHHHcC---CcEEEECCCHHHHHHHHHcC---C-----------Ccceeeechhh
Confidence 3444444567899999999999999999987 69999999999999997531 0 00011233445
Q ss_pred ccccCCCCCCccEEEEccccccCChhHHHHHHHHHHHccCCC-EEEEEecCCchhHHHHhhccCccCCCCcchhhhcccc
Q 002218 785 ITVFDSRLHGFDIGTCLEVIEHMEEDEASQFGNIVLSSFRPR-ILIVSTPNYEYNAILQKSSSTIQEDDPDEKTQLQSCK 863 (952)
Q Consensus 785 a~dLpf~d~sFDVVVcieVIEHL~dD~l~~L~eeI~RvLKPG-~LIISTPN~efN~lf~~L~~~ta~eYPde~~g~~~~~ 863 (952)
+..+++.+++||+|++.+++||++ +.... .+++.++|||| .+++.+|+... ..... . +.
T Consensus 162 ~~~l~~~~~~fD~I~~~~vl~h~~-d~~~~-l~~~~r~LkpgG~l~i~~~~~~~--~~~~~------~---------~~- 221 (416)
T 4e2x_A 162 ADDVRRTEGPANVIYAANTLCHIP-YVQSV-LEGVDALLAPDGVFVFEDPYLGD--IVAKT------S---------FD- 221 (416)
T ss_dssp HHHHHHHHCCEEEEEEESCGGGCT-THHHH-HHHHHHHEEEEEEEEEEEECHHH--HHHHT------C---------GG-
T ss_pred HhhcccCCCCEEEEEECChHHhcC-CHHHH-HHHHHHHcCCCeEEEEEeCChHH--hhhhc------c---------hh-
Confidence 556666678999999999999998 55444 45799999998 88899998532 22210 1 11
Q ss_pred ccCCCCccccCHHHHHHHHHHHHHHcCcEEEEE
Q 002218 864 FRNHDHKFEWTRDQFNCWATELAARHNYSVEFS 896 (952)
Q Consensus 864 fRh~DHkFEWTReEFqsWae~La~q~GYsVefs 896 (952)
...+.|...++.+++. .+++++||.+.-.
T Consensus 222 ~~~~~~~~~~s~~~l~----~ll~~aGf~~~~~ 250 (416)
T 4e2x_A 222 QIFDEHFFLFSATSVQ----GMAQRCGFELVDV 250 (416)
T ss_dssp GCSTTCCEECCHHHHH----HHHHHTTEEEEEE
T ss_pred hhhhhhhhcCCHHHHH----HHHHHcCCEEEEE
Confidence 1124677778999988 5678899988543
No 62
>1vlm_A SAM-dependent methyltransferase; possible histamine methyltransferase, structural genomics, JCSG, protein struc initiative, PSI; 2.20A {Thermotoga maritima} SCOP: c.66.1.41
Probab=99.47 E-value=7.9e-13 Score=132.65 Aligned_cols=133 Identities=17% Similarity=0.159 Sum_probs=101.4
Q ss_pred CCEEEEEcCccchHHHHHhcCCCCCceEEEEeCChHHHHHHHHHHhhhhhcccccCCCCCCCccEEEEEcCccccCCCCC
Q 002218 714 ATTLVDFGCGSGSLLDSLLDYPTALEKIVGVDISQKSLSRAAKIIHSKLSKKLDAAVPCTDVKSAVLFDGSITVFDSRLH 793 (952)
Q Consensus 714 ~krVLDIGCGeG~ll~~LAr~g~~~~qVVGVDISeemLe~ArkrLsa~la~~~~~l~Pr~~~~nVtf~qGDa~dLpf~d~ 793 (952)
+.+|||||||+|.++..+++. +|+|+|+.+++.|+++ ++++.++|+.++++..+
T Consensus 48 ~~~vLDiG~G~G~~~~~l~~~-------~~vD~s~~~~~~a~~~-------------------~~~~~~~d~~~~~~~~~ 101 (219)
T 1vlm_A 48 EGRGVEIGVGTGRFAVPLKIK-------IGVEPSERMAEIARKR-------------------GVFVLKGTAENLPLKDE 101 (219)
T ss_dssp SSCEEEETCTTSTTHHHHTCC-------EEEESCHHHHHHHHHT-------------------TCEEEECBTTBCCSCTT
T ss_pred CCcEEEeCCCCCHHHHHHHHH-------hccCCCHHHHHHHHhc-------------------CCEEEEcccccCCCCCC
Confidence 789999999999999988653 9999999999999652 57889999999888788
Q ss_pred CccEEEEccccccCChhHHHHHHHHHHHccCCC-EEEEEecCCchh--HHHHhhccCccCCCCcchhhhccccccCCCCc
Q 002218 794 GFDIGTCLEVIEHMEEDEASQFGNIVLSSFRPR-ILIVSTPNYEYN--AILQKSSSTIQEDDPDEKTQLQSCKFRNHDHK 870 (952)
Q Consensus 794 sFDVVVcieVIEHL~dD~l~~L~eeI~RvLKPG-~LIISTPN~efN--~lf~~L~~~ta~eYPde~~g~~~~~fRh~DHk 870 (952)
.||+|++..+++|++ +... +.+++.++|+|| .+++.+++.... ..+... ........|.
T Consensus 102 ~fD~v~~~~~l~~~~-~~~~-~l~~~~~~L~pgG~l~i~~~~~~~~~~~~~~~~----------------~~~~~~~~~~ 163 (219)
T 1vlm_A 102 SFDFALMVTTICFVD-DPER-ALKEAYRILKKGGYLIVGIVDRESFLGREYEKN----------------KEKSVFYKNA 163 (219)
T ss_dssp CEEEEEEESCGGGSS-CHHH-HHHHHHHHEEEEEEEEEEEECSSSHHHHHHHHT----------------TTC-CCSTTC
T ss_pred CeeEEEEcchHhhcc-CHHH-HHHHHHHHcCCCcEEEEEEeCCccHHHHHHHHH----------------hcCcchhccc
Confidence 999999999999997 4434 446799999998 888888875422 111111 0011122455
Q ss_pred cccCHHHHHHHHHHHHHHcCcEEE
Q 002218 871 FEWTRDQFNCWATELAARHNYSVE 894 (952)
Q Consensus 871 FEWTReEFqsWae~La~q~GYsVe 894 (952)
..++.+++.+ +++++||.+.
T Consensus 164 ~~~~~~~l~~----~l~~~Gf~~~ 183 (219)
T 1vlm_A 164 RFFSTEELMD----LMRKAGFEEF 183 (219)
T ss_dssp CCCCHHHHHH----HHHHTTCEEE
T ss_pred ccCCHHHHHH----HHHHCCCeEE
Confidence 6689999984 5677899874
No 63
>3ocj_A Putative exported protein; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; HET: PLM; 1.39A {Bordetella parapertussis}
Probab=99.46 E-value=7.8e-13 Score=139.82 Aligned_cols=111 Identities=18% Similarity=0.203 Sum_probs=89.2
Q ss_pred CCCCEEEEEcCccchHHHHHhcCCCCCceEEEEeCChHHHHHHHHHHhhhhhcccccCCCCCCCccEEEEEcCccccCCC
Q 002218 712 SCATTLVDFGCGSGSLLDSLLDYPTALEKIVGVDISQKSLSRAAKIIHSKLSKKLDAAVPCTDVKSAVLFDGSITVFDSR 791 (952)
Q Consensus 712 ~k~krVLDIGCGeG~ll~~LAr~g~~~~qVVGVDISeemLe~ArkrLsa~la~~~~~l~Pr~~~~nVtf~qGDa~dLpf~ 791 (952)
.++.+|||||||+|.++..++....+..+|+|+|+|+.+++.|++++... ....+++++++|+.++++.
T Consensus 117 ~~~~~vLDiGcG~G~~~~~la~~~~~~~~v~gvD~s~~~~~~a~~~~~~~-----------~~~~~v~~~~~d~~~~~~~ 185 (305)
T 3ocj_A 117 RPGCVVASVPCGWMSELLALDYSACPGVQLVGIDYDPEALDGATRLAAGH-----------ALAGQITLHRQDAWKLDTR 185 (305)
T ss_dssp CTTCEEEETTCTTCHHHHTSCCTTCTTCEEEEEESCHHHHHHHHHHHTTS-----------TTGGGEEEEECCGGGCCCC
T ss_pred CCCCEEEEecCCCCHHHHHHHHhcCCCCeEEEEECCHHHHHHHHHHHHhc-----------CCCCceEEEECchhcCCcc
Confidence 46789999999999999998632223479999999999999999876421 1223599999999999877
Q ss_pred CCCccEEEEccccccCChhHH-HHHHHHHHHccCCC-EEEEEecC
Q 002218 792 LHGFDIGTCLEVIEHMEEDEA-SQFGNIVLSSFRPR-ILIVSTPN 834 (952)
Q Consensus 792 d~sFDVVVcieVIEHL~dD~l-~~L~eeI~RvLKPG-~LIISTPN 834 (952)
+.||+|++..+++|+++... ..+.+++.++|||| .+++.+..
T Consensus 186 -~~fD~v~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~ 229 (305)
T 3ocj_A 186 -EGYDLLTSNGLNIYEPDDARVTELYRRFWQALKPGGALVTSFLT 229 (305)
T ss_dssp -SCEEEEECCSSGGGCCCHHHHHHHHHHHHHHEEEEEEEEEECCC
T ss_pred -CCeEEEEECChhhhcCCHHHHHHHHHHHHHhcCCCeEEEEEecC
Confidence 89999999999999974442 34667899999999 77777654
No 64
>2i62_A Nicotinamide N-methyltransferase; structural genomics, structural genomics consortium, SGC; HET: SAH; 1.80A {Mus musculus} PDB: 2iip_A* 3rod_A*
Probab=99.44 E-value=1e-12 Score=133.69 Aligned_cols=158 Identities=11% Similarity=0.010 Sum_probs=103.3
Q ss_pred CCCCEEEEEcCccchHHHHHhcCCCCCceEEEEeCChHHHHHHHHHHhhhhhcc---------cccCCCCCC--------
Q 002218 712 SCATTLVDFGCGSGSLLDSLLDYPTALEKIVGVDISQKSLSRAAKIIHSKLSKK---------LDAAVPCTD-------- 774 (952)
Q Consensus 712 ~k~krVLDIGCGeG~ll~~LAr~g~~~~qVVGVDISeemLe~ArkrLsa~la~~---------~~~l~Pr~~-------- 774 (952)
.++.+|||||||+|.++..+++.+. .+|+|+|+|+.|++.|++++....... .........
T Consensus 55 ~~~~~vLDlGcG~G~~~~~l~~~~~--~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 132 (265)
T 2i62_A 55 VKGELLIDIGSGPTIYQLLSACESF--TEIIVSDYTDQNLWELQKWLKKEPGAFDWSPVVTYVCDLEGNRMKGPEKEEKL 132 (265)
T ss_dssp CCEEEEEEESCTTCCGGGTTGGGTE--EEEEEEESCHHHHHHHHHHHTTCTTCCCCHHHHHHHHHHTTTCSCHHHHHHHH
T ss_pred cCCCEEEEECCCccHHHHHHhhccc--CeEEEecCCHHHHHHHHHHHhcCCccccchhhhhhhhcccccccchHHHHHHh
Confidence 4567999999999999999888762 499999999999999988764210000 000000000
Q ss_pred CccE-EEEEcCccccCC-CC---CCccEEEEccccccCChh--HHHHHHHHHHHccCCC-EEEEEecCCchhHHHHhhcc
Q 002218 775 VKSA-VLFDGSITVFDS-RL---HGFDIGTCLEVIEHMEED--EASQFGNIVLSSFRPR-ILIVSTPNYEYNAILQKSSS 846 (952)
Q Consensus 775 ~~nV-tf~qGDa~dLpf-~d---~sFDVVVcieVIEHL~dD--~l~~L~eeI~RvLKPG-~LIISTPN~efN~lf~~L~~ 846 (952)
..++ ++.++|+.+.++ .. ++||+|++..+++|+.+. ....+.+++.++|||| .+++.++...- .+.
T Consensus 133 ~~~v~~~~~~d~~~~~~~~~~~~~~fD~v~~~~~l~~~~~~~~~~~~~l~~~~~~LkpgG~li~~~~~~~~--~~~---- 206 (265)
T 2i62_A 133 RRAIKQVLKCDVTQSQPLGGVSLPPADCLLSTLCLDAACPDLPAYRTALRNLGSLLKPGGFLVMVDALKSS--YYM---- 206 (265)
T ss_dssp HHHEEEEEECCTTSSSTTTTCCCCCEEEEEEESCHHHHCSSHHHHHHHHHHHHTTEEEEEEEEEEEESSCC--EEE----
T ss_pred hhhheeEEEeeeccCCCCCccccCCccEEEEhhhhhhhcCChHHHHHHHHHHHhhCCCCcEEEEEecCCCc--eEE----
Confidence 0127 999999988654 44 789999999999966533 4455566899999999 77777643220 000
Q ss_pred CccCCCCcchhhhccccccCCCCccccCHHHHHHHHHHHHHHcCcEEEEEe
Q 002218 847 TIQEDDPDEKTQLQSCKFRNHDHKFEWTRDQFNCWATELAARHNYSVEFSG 897 (952)
Q Consensus 847 ~ta~eYPde~~g~~~~~fRh~DHkFEWTReEFqsWae~La~q~GYsVefsG 897 (952)
.... .-+...++++++. .++.+.||.+.-..
T Consensus 207 --------------~~~~--~~~~~~~~~~~~~----~~l~~aGf~~~~~~ 237 (265)
T 2i62_A 207 --------------IGEQ--KFSSLPLGWETVR----DAVEEAGYTIEQFE 237 (265)
T ss_dssp --------------ETTE--EEECCCCCHHHHH----HHHHHTTCEEEEEE
T ss_pred --------------cCCc--cccccccCHHHHH----HHHHHCCCEEEEEE
Confidence 0000 0012347888888 45678899886443
No 65
>3ggd_A SAM-dependent methyltransferase; YP_325210.1, structural GEN joint center for structural genomics, JCSG; HET: SAH; 2.11A {Anabaena variabilis atcc 29413}
Probab=99.44 E-value=2.9e-13 Score=137.30 Aligned_cols=160 Identities=14% Similarity=0.113 Sum_probs=113.6
Q ss_pred CCCCEEEEEcCccchHHHHHhcCCCCCceEEEEeCChHHHHHHHHHHhhhhhcccccCCCCCCCccEEEEEcCccccCCC
Q 002218 712 SCATTLVDFGCGSGSLLDSLLDYPTALEKIVGVDISQKSLSRAAKIIHSKLSKKLDAAVPCTDVKSAVLFDGSITVFDSR 791 (952)
Q Consensus 712 ~k~krVLDIGCGeG~ll~~LAr~g~~~~qVVGVDISeemLe~ArkrLsa~la~~~~~l~Pr~~~~nVtf~qGDa~dLpf~ 791 (952)
.++.+|||||||+|.++..|++.+ .+|+|+|+|+.+++.|++++. ..++++.++|+.+++..
T Consensus 55 ~~~~~vLD~GcG~G~~~~~la~~~---~~v~gvD~s~~~~~~a~~~~~---------------~~~~~~~~~d~~~~~~~ 116 (245)
T 3ggd_A 55 NPELPLIDFACGNGTQTKFLSQFF---PRVIGLDVSKSALEIAAKENT---------------AANISYRLLDGLVPEQA 116 (245)
T ss_dssp CTTSCEEEETCTTSHHHHHHHHHS---SCEEEEESCHHHHHHHHHHSC---------------CTTEEEEECCTTCHHHH
T ss_pred CCCCeEEEEcCCCCHHHHHHHHhC---CCEEEEECCHHHHHHHHHhCc---------------ccCceEEECcccccccc
Confidence 456799999999999999999987 489999999999999987641 23799999999886543
Q ss_pred C-----CCccEEEEccccccCChhHHHHHHHHHHHccCCC-EEEEEecCCchhHHHHhhccCccCCCCcchhhhcccccc
Q 002218 792 L-----HGFDIGTCLEVIEHMEEDEASQFGNIVLSSFRPR-ILIVSTPNYEYNAILQKSSSTIQEDDPDEKTQLQSCKFR 865 (952)
Q Consensus 792 d-----~sFDVVVcieVIEHL~dD~l~~L~eeI~RvLKPG-~LIISTPN~efN~lf~~L~~~ta~eYPde~~g~~~~~fR 865 (952)
. ..||+|++..+++|++++....+.+++.++|||| .+++..+......++..+.. ....-|. . ....++
T Consensus 117 ~~~~~~~~~d~v~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~-~~~~~~~-~---~~~~~~ 191 (245)
T 3ggd_A 117 AQIHSEIGDANIYMRTGFHHIPVEKRELLGQSLRILLGKQGAMYLIELGTGCIDFFNSLLE-KYGQLPY-E---LLLVME 191 (245)
T ss_dssp HHHHHHHCSCEEEEESSSTTSCGGGHHHHHHHHHHHHTTTCEEEEEEECTTHHHHHHHHHH-HHSSCCH-H---HHHHHT
T ss_pred cccccccCccEEEEcchhhcCCHHHHHHHHHHHHHHcCCCCEEEEEeCCccccHHHHHHHh-CCCCCch-h---hhhccc
Confidence 2 3499999999999999776677778899999998 77887776654444433211 0001110 0 011122
Q ss_pred CCCCccccCHHHHHHHHHHHHHHcCcEEEEEeecC
Q 002218 866 NHDHKFEWTRDQFNCWATELAARHNYSVEFSGVGG 900 (952)
Q Consensus 866 h~DHkFEWTReEFqsWae~La~q~GYsVefsGVG~ 900 (952)
+......++++++..++ .||.+.-.+...
T Consensus 192 ~~~~~~~~~~~~~~~~~------aGf~~~~~~~~~ 220 (245)
T 3ggd_A 192 HGIRPGIFTAEDIELYF------PDFEILSQGEGL 220 (245)
T ss_dssp TTCCCCCCCHHHHHHHC------TTEEEEEEECCB
T ss_pred cCCCCCccCHHHHHHHh------CCCEEEeccccc
Confidence 32233457999998653 799987655443
No 66
>1ve3_A Hypothetical protein PH0226; dimer, riken structural genomics/proteomics initiative, RSGI, structural genomics, unknown function, NPPSFA; HET: SAM; 2.10A {Pyrococcus horikoshii} SCOP: c.66.1.43
Probab=99.44 E-value=9.4e-13 Score=130.91 Aligned_cols=107 Identities=24% Similarity=0.344 Sum_probs=89.9
Q ss_pred CCCEEEEEcCccchHHHHHhcCCCCCceEEEEeCChHHHHHHHHHHhhhhhcccccCCCCCCCccEEEEEcCccccCCCC
Q 002218 713 CATTLVDFGCGSGSLLDSLLDYPTALEKIVGVDISQKSLSRAAKIIHSKLSKKLDAAVPCTDVKSAVLFDGSITVFDSRL 792 (952)
Q Consensus 713 k~krVLDIGCGeG~ll~~LAr~g~~~~qVVGVDISeemLe~ArkrLsa~la~~~~~l~Pr~~~~nVtf~qGDa~dLpf~d 792 (952)
++.+|||+|||+|.++..+++.+ .+++|+|+|+.+++.|+++.... + .++++.++|+.++++..
T Consensus 38 ~~~~vLDlG~G~G~~~~~l~~~~---~~v~~vD~s~~~~~~a~~~~~~~------------~-~~~~~~~~d~~~~~~~~ 101 (227)
T 1ve3_A 38 KRGKVLDLACGVGGFSFLLEDYG---FEVVGVDISEDMIRKAREYAKSR------------E-SNVEFIVGDARKLSFED 101 (227)
T ss_dssp SCCEEEEETCTTSHHHHHHHHTT---CEEEEEESCHHHHHHHHHHHHHT------------T-CCCEEEECCTTSCCSCT
T ss_pred CCCeEEEEeccCCHHHHHHHHcC---CEEEEEECCHHHHHHHHHHHHhc------------C-CCceEEECchhcCCCCC
Confidence 46899999999999999999987 49999999999999998876421 1 47899999999988777
Q ss_pred CCccEEEEccccccCChhHHHHHHHHHHHccCCC-EEEEEecCC
Q 002218 793 HGFDIGTCLEVIEHMEEDEASQFGNIVLSSFRPR-ILIVSTPNY 835 (952)
Q Consensus 793 ~sFDVVVcieVIEHL~dD~l~~L~eeI~RvLKPG-~LIISTPN~ 835 (952)
++||+|++..++++...+....+.+++.++|+|| .+++.+|+.
T Consensus 102 ~~~D~v~~~~~~~~~~~~~~~~~l~~~~~~L~~gG~l~~~~~~~ 145 (227)
T 1ve3_A 102 KTFDYVIFIDSIVHFEPLELNQVFKEVRRVLKPSGKFIMYFTDL 145 (227)
T ss_dssp TCEEEEEEESCGGGCCHHHHHHHHHHHHHHEEEEEEEEEEEECH
T ss_pred CcEEEEEEcCchHhCCHHHHHHHHHHHHHHcCCCcEEEEEecCh
Confidence 8999999999966665444556667899999998 888888873
No 67
>1wzn_A SAM-dependent methyltransferase; structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: SAH; 1.90A {Pyrococcus horikoshii} SCOP: c.66.1.43
Probab=99.43 E-value=1.1e-12 Score=133.14 Aligned_cols=118 Identities=19% Similarity=0.380 Sum_probs=94.0
Q ss_pred HHHHHHHHhhc---CCCCEEEEEcCccchHHHHHhcCCCCCceEEEEeCChHHHHHHHHHHhhhhhcccccCCCCCCCcc
Q 002218 701 RVEYALQHIKE---SCATTLVDFGCGSGSLLDSLLDYPTALEKIVGVDISQKSLSRAAKIIHSKLSKKLDAAVPCTDVKS 777 (952)
Q Consensus 701 R~efVldlL~~---~k~krVLDIGCGeG~ll~~LAr~g~~~~qVVGVDISeemLe~ArkrLsa~la~~~~~l~Pr~~~~n 777 (952)
..+++.+.+.. .++.+|||+|||+|.++..|++.+ .+|+|+|+|+.|++.|+++.... + .+
T Consensus 26 ~~~~~~~~~~~~~~~~~~~vLDlGcG~G~~~~~l~~~~---~~v~gvD~s~~~l~~a~~~~~~~------------~-~~ 89 (252)
T 1wzn_A 26 EIDFVEEIFKEDAKREVRRVLDLACGTGIPTLELAERG---YEVVGLDLHEEMLRVARRKAKER------------N-LK 89 (252)
T ss_dssp HHHHHHHHHHHTCSSCCCEEEEETCTTCHHHHHHHHTT---CEEEEEESCHHHHHHHHHHHHHT------------T-CC
T ss_pred HHHHHHHHHHHhcccCCCEEEEeCCCCCHHHHHHHHCC---CeEEEEECCHHHHHHHHHHHHhc------------C-Cc
Confidence 34555555543 356899999999999999999987 79999999999999998876421 1 26
Q ss_pred EEEEEcCccccCCCCCCccEEEEc-cccccCChhHHHHHHHHHHHccCCC-EEEEEecCC
Q 002218 778 AVLFDGSITVFDSRLHGFDIGTCL-EVIEHMEEDEASQFGNIVLSSFRPR-ILIVSTPNY 835 (952)
Q Consensus 778 Vtf~qGDa~dLpf~d~sFDVVVci-eVIEHL~dD~l~~L~eeI~RvLKPG-~LIISTPN~ 835 (952)
+++.++|+.++++. ..||+|+|. .+++|+..+....+.+++.++|+|| .+++.+|+.
T Consensus 90 v~~~~~d~~~~~~~-~~fD~v~~~~~~~~~~~~~~~~~~l~~~~~~L~pgG~li~~~~~~ 148 (252)
T 1wzn_A 90 IEFLQGDVLEIAFK-NEFDAVTMFFSTIMYFDEEDLRKLFSKVAEALKPGGVFITDFPCW 148 (252)
T ss_dssp CEEEESCGGGCCCC-SCEEEEEECSSGGGGSCHHHHHHHHHHHHHHEEEEEEEEEEEEC-
T ss_pred eEEEECChhhcccC-CCccEEEEcCCchhcCCHHHHHHHHHHHHHHcCCCeEEEEeccch
Confidence 89999999988754 689999997 4667777666667777899999999 888888874
No 68
>4azs_A Methyltransferase WBDD; kinase; HET: AMP SAM; 2.15A {Escherichia coli} PDB: 4azt_A* 4azv_A* 4azw_A*
Probab=99.43 E-value=1.6e-13 Score=158.84 Aligned_cols=106 Identities=21% Similarity=0.254 Sum_probs=83.2
Q ss_pred CCCEEEEEcCccchHHHHHhcCCCCCceEEEEeCChHHHHHHHHHHhhhhhcccccCCCCCCCccEEEEEcCcccc--CC
Q 002218 713 CATTLVDFGCGSGSLLDSLLDYPTALEKIVGVDISQKSLSRAAKIIHSKLSKKLDAAVPCTDVKSAVLFDGSITVF--DS 790 (952)
Q Consensus 713 k~krVLDIGCGeG~ll~~LAr~g~~~~qVVGVDISeemLe~ArkrLsa~la~~~~~l~Pr~~~~nVtf~qGDa~dL--pf 790 (952)
++.+|||||||.|.++..|++.| ++|+|||+++.+|+.|+..... .+..+|+|.+++++++ ..
T Consensus 66 ~~~~vLDvGCG~G~~~~~la~~g---a~V~giD~~~~~i~~a~~~a~~------------~~~~~~~~~~~~~~~~~~~~ 130 (569)
T 4azs_A 66 RPLNVLDLGCAQGFFSLSLASKG---ATIVGIDFQQENINVCRALAEE------------NPDFAAEFRVGRIEEVIAAL 130 (569)
T ss_dssp SCCEEEEETCTTSHHHHHHHHTT---CEEEEEESCHHHHHHHHHHHHT------------STTSEEEEEECCHHHHHHHC
T ss_pred CCCeEEEECCCCcHHHHHHHhCC---CEEEEECCCHHHHHHHHHHHHh------------cCCCceEEEECCHHHHhhhc
Confidence 56799999999999999999998 8999999999999999765431 2334899999999987 44
Q ss_pred CCCCccEEEEccccccCChhHHHHHHHHHHHccCCC--EEEEEec
Q 002218 791 RLHGFDIGTCLEVIEHMEEDEASQFGNIVLSSFRPR--ILIVSTP 833 (952)
Q Consensus 791 ~d~sFDVVVcieVIEHL~dD~l~~L~eeI~RvLKPG--~LIISTP 833 (952)
.++.||+|+|+++|||++++........+++.|+++ .+++...
T Consensus 131 ~~~~fD~v~~~e~~ehv~~~~~~~~~~~~~~tl~~~~~~~~~~~~ 175 (569)
T 4azs_A 131 EEGEFDLAIGLSVFHHIVHLHGIDEVKRLLSRLADVTQAVILELA 175 (569)
T ss_dssp CTTSCSEEEEESCHHHHHHHHCHHHHHHHHHHHHHHSSEEEEECC
T ss_pred cCCCccEEEECcchhcCCCHHHHHHHHHHHHHhccccceeeEEec
Confidence 567899999999999998554222223466777776 4444433
No 69
>3gu3_A Methyltransferase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; HET: SAH; 2.30A {Bacillus cereus} SCOP: c.66.1.49 PDB: 2gh1_A
Probab=99.43 E-value=1.1e-12 Score=137.40 Aligned_cols=118 Identities=21% Similarity=0.352 Sum_probs=95.3
Q ss_pred HHHHHHHHh-hcCCCCEEEEEcCccchHHHHHhcCCCCCceEEEEeCChHHHHHHHHHHhhhhhcccccCCCCCCCccEE
Q 002218 701 RVEYALQHI-KESCATTLVDFGCGSGSLLDSLLDYPTALEKIVGVDISQKSLSRAAKIIHSKLSKKLDAAVPCTDVKSAV 779 (952)
Q Consensus 701 R~efVldlL-~~~k~krVLDIGCGeG~ll~~LAr~g~~~~qVVGVDISeemLe~ArkrLsa~la~~~~~l~Pr~~~~nVt 779 (952)
...++.+.+ ...++.+|||||||+|.++..+++..+...+|+|+|+|+.+++.|++++.. ...+++
T Consensus 9 ~~~~~~~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~~~~~~v~gvD~s~~~~~~a~~~~~~-------------~~~~v~ 75 (284)
T 3gu3_A 9 YVSFLVNTVWKITKPVHIVDYGCGYGYLGLVLMPLLPEGSKYTGIDSGETLLAEARELFRL-------------LPYDSE 75 (284)
T ss_dssp HHHHHHHTTSCCCSCCEEEEETCTTTHHHHHHTTTSCTTCEEEEEESCHHHHHHHHHHHHS-------------SSSEEE
T ss_pred HHHHHHHHHhccCCCCeEEEecCCCCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHh-------------cCCceE
Confidence 344555544 345778999999999999999998742237999999999999999887642 223899
Q ss_pred EEEcCccccCCCCCCccEEEEccccccCChhHHHHHHHHHHHccCCC-EEEEEecC
Q 002218 780 LFDGSITVFDSRLHGFDIGTCLEVIEHMEEDEASQFGNIVLSSFRPR-ILIVSTPN 834 (952)
Q Consensus 780 f~qGDa~dLpf~d~sFDVVVcieVIEHL~dD~l~~L~eeI~RvLKPG-~LIISTPN 834 (952)
+.++|+.++++ .++||+|++..+++|+++ .. .+.+++.++|||| .+++..|+
T Consensus 76 ~~~~d~~~~~~-~~~fD~v~~~~~l~~~~~-~~-~~l~~~~~~LkpgG~l~~~~~~ 128 (284)
T 3gu3_A 76 FLEGDATEIEL-NDKYDIAICHAFLLHMTT-PE-TMLQKMIHSVKKGGKIICFEPH 128 (284)
T ss_dssp EEESCTTTCCC-SSCEEEEEEESCGGGCSS-HH-HHHHHHHHTEEEEEEEEEEECC
T ss_pred EEEcchhhcCc-CCCeeEEEECChhhcCCC-HH-HHHHHHHHHcCCCCEEEEEecc
Confidence 99999999887 468999999999999984 43 4446799999999 88888887
No 70
>3g5t_A Trans-aconitate 3-methyltransferase; structural genomics, protein structure initiative, PSI, center for eukaryotic structural genomics; HET: MSE SAH T8N; 1.12A {Saccharomyces cerevisiae}
Probab=99.43 E-value=6.1e-13 Score=139.78 Aligned_cols=118 Identities=19% Similarity=0.225 Sum_probs=91.1
Q ss_pred HHHHHHHHHHhhcCCCCEEEEEcCccchHHHHHhcCCCCCceEEEEeCChHHHHHHHHHHhhhhhcccccCCCCCCCccE
Q 002218 699 KQRVEYALQHIKESCATTLVDFGCGSGSLLDSLLDYPTALEKIVGVDISQKSLSRAAKIIHSKLSKKLDAAVPCTDVKSA 778 (952)
Q Consensus 699 ~QR~efVldlL~~~k~krVLDIGCGeG~ll~~LAr~g~~~~qVVGVDISeemLe~ArkrLsa~la~~~~~l~Pr~~~~nV 778 (952)
...++.+.+... .++.+|||||||+|.++..|++...+..+|+|+|+|+.+++.|++++... .....++
T Consensus 23 ~~~~~~l~~~~~-~~~~~vLDiGcG~G~~~~~la~~~~~~~~v~gvD~s~~~~~~a~~~~~~~----------~~~~~~v 91 (299)
T 3g5t_A 23 SDFYKMIDEYHD-GERKLLVDVGCGPGTATLQMAQELKPFEQIIGSDLSATMIKTAEVIKEGS----------PDTYKNV 91 (299)
T ss_dssp HHHHHHHHHHCC-SCCSEEEEETCTTTHHHHHHHHHSSCCSEEEEEESCHHHHHHHHHHHHHC----------C-CCTTE
T ss_pred HHHHHHHHHHhc-CCCCEEEEECCCCCHHHHHHHHhCCCCCEEEEEeCCHHHHHHHHHHHHhc----------cCCCCce
Confidence 334445555433 46789999999999999999952112389999999999999999876531 0124589
Q ss_pred EEEEcCccccCCCC------CCccEEEEccccccCChhHHHHHHHHHHHccCCC-EEEE
Q 002218 779 VLFDGSITVFDSRL------HGFDIGTCLEVIEHMEEDEASQFGNIVLSSFRPR-ILIV 830 (952)
Q Consensus 779 tf~qGDa~dLpf~d------~sFDVVVcieVIEHL~dD~l~~L~eeI~RvLKPG-~LII 830 (952)
+++++|+.++++.. ++||+|++..+++|+ +.. .+.+++.++|||| .+++
T Consensus 92 ~~~~~d~~~~~~~~~~~~~~~~fD~V~~~~~l~~~--~~~-~~l~~~~~~LkpgG~l~i 147 (299)
T 3g5t_A 92 SFKISSSDDFKFLGADSVDKQKIDMITAVECAHWF--DFE-KFQRSAYANLRKDGTIAI 147 (299)
T ss_dssp EEEECCTTCCGGGCTTTTTSSCEEEEEEESCGGGS--CHH-HHHHHHHHHEEEEEEEEE
T ss_pred EEEEcCHHhCCccccccccCCCeeEEeHhhHHHHh--CHH-HHHHHHHHhcCCCcEEEE
Confidence 99999999988777 899999999999999 443 4456799999999 6655
No 71
>3ege_A Putative methyltransferase from antibiotic biosyn pathway; YP_324569.1, putative methyltransferase from antibiotic BIOS pathway; 2.40A {Anabaena variabilis atcc 29413}
Probab=99.42 E-value=7e-13 Score=136.93 Aligned_cols=112 Identities=15% Similarity=0.141 Sum_probs=93.2
Q ss_pred HHHHHHHHHhhcCCCCEEEEEcCccchHHHHHhcCCCCCceEEEEeCChHHHHHHHHHHhhhhhcccccCCCCCCCccEE
Q 002218 700 QRVEYALQHIKESCATTLVDFGCGSGSLLDSLLDYPTALEKIVGVDISQKSLSRAAKIIHSKLSKKLDAAVPCTDVKSAV 779 (952)
Q Consensus 700 QR~efVldlL~~~k~krVLDIGCGeG~ll~~LAr~g~~~~qVVGVDISeemLe~ArkrLsa~la~~~~~l~Pr~~~~nVt 779 (952)
...+.+.+.+...++.+|||||||+|.++..+++.+ .+|+|+|+|+.|++.|+++ . +++
T Consensus 21 ~~~~~l~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~---~~v~gvD~s~~~~~~a~~~-----------------~-~~~ 79 (261)
T 3ege_A 21 RIVNAIINLLNLPKGSVIADIGAGTGGYSVALANQG---LFVYAVEPSIVMRQQAVVH-----------------P-QVE 79 (261)
T ss_dssp HHHHHHHHHHCCCTTCEEEEETCTTSHHHHHHHTTT---CEEEEECSCHHHHHSSCCC-----------------T-TEE
T ss_pred HHHHHHHHHhCCCCCCEEEEEcCcccHHHHHHHhCC---CEEEEEeCCHHHHHHHHhc-----------------c-CCE
Confidence 344566677766678999999999999999999865 7999999999999887431 1 899
Q ss_pred EEEcCccccCCCCCCccEEEEccccccCChhHHHHHHHHHHHccCCC-EEEEEecCC
Q 002218 780 LFDGSITVFDSRLHGFDIGTCLEVIEHMEEDEASQFGNIVLSSFRPR-ILIVSTPNY 835 (952)
Q Consensus 780 f~qGDa~dLpf~d~sFDVVVcieVIEHL~dD~l~~L~eeI~RvLKPG-~LIISTPN~ 835 (952)
+.++|+.++++.+++||+|++..+++|++ +....+ +++.++|| | .+++.+++.
T Consensus 80 ~~~~d~~~~~~~~~~fD~v~~~~~l~~~~-~~~~~l-~~~~~~Lk-gG~~~~~~~~~ 133 (261)
T 3ege_A 80 WFTGYAENLALPDKSVDGVISILAIHHFS-HLEKSF-QEMQRIIR-DGTIVLLTFDI 133 (261)
T ss_dssp EECCCTTSCCSCTTCBSEEEEESCGGGCS-SHHHHH-HHHHHHBC-SSCEEEEEECG
T ss_pred EEECchhhCCCCCCCEeEEEEcchHhhcc-CHHHHH-HHHHHHhC-CcEEEEEEcCC
Confidence 99999999998889999999999999997 444444 57999999 8 677777764
No 72
>2pxx_A Uncharacterized protein MGC2408; structural genomics consortium, SGC, methyltransferase, LOC84291, transferase; HET: SAH; 1.30A {Homo sapiens}
Probab=99.42 E-value=6.6e-13 Score=130.35 Aligned_cols=108 Identities=16% Similarity=0.117 Sum_probs=90.9
Q ss_pred CCCCEEEEEcCccchHHHHHhcCCCCCceEEEEeCChHHHHHHHHHHhhhhhcccccCCCCCCCccEEEEEcCccccCCC
Q 002218 712 SCATTLVDFGCGSGSLLDSLLDYPTALEKIVGVDISQKSLSRAAKIIHSKLSKKLDAAVPCTDVKSAVLFDGSITVFDSR 791 (952)
Q Consensus 712 ~k~krVLDIGCGeG~ll~~LAr~g~~~~qVVGVDISeemLe~ArkrLsa~la~~~~~l~Pr~~~~nVtf~qGDa~dLpf~ 791 (952)
.++.+|||+|||+|.++..+++.+. .+|+|+|+|+.+++.|+++.. ...++++.++|+.++++.
T Consensus 41 ~~~~~vLdiGcG~G~~~~~l~~~~~--~~v~~~D~s~~~~~~a~~~~~--------------~~~~i~~~~~d~~~~~~~ 104 (215)
T 2pxx_A 41 RPEDRILVLGCGNSALSYELFLGGF--PNVTSVDYSSVVVAAMQACYA--------------HVPQLRWETMDVRKLDFP 104 (215)
T ss_dssp CTTCCEEEETCTTCSHHHHHHHTTC--CCEEEEESCHHHHHHHHHHTT--------------TCTTCEEEECCTTSCCSC
T ss_pred CCCCeEEEECCCCcHHHHHHHHcCC--CcEEEEeCCHHHHHHHHHhcc--------------cCCCcEEEEcchhcCCCC
Confidence 4668999999999999999998873 389999999999999987642 124789999999998888
Q ss_pred CCCccEEEEccccccCC-------------hhHHHHHHHHHHHccCCC-EEEEEecCC
Q 002218 792 LHGFDIGTCLEVIEHME-------------EDEASQFGNIVLSSFRPR-ILIVSTPNY 835 (952)
Q Consensus 792 d~sFDVVVcieVIEHL~-------------dD~l~~L~eeI~RvLKPG-~LIISTPN~ 835 (952)
+++||+|++..+++|+. .+....+.+++.++|||| .+++.+++.
T Consensus 105 ~~~fD~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~li~~~~~~ 162 (215)
T 2pxx_A 105 SASFDVVLEKGTLDALLAGERDPWTVSSEGVHTVDQVLSEVSRVLVPGGRFISMTSAA 162 (215)
T ss_dssp SSCEEEEEEESHHHHHTTTCSCTTSCCHHHHHHHHHHHHHHHHHEEEEEEEEEEESCC
T ss_pred CCcccEEEECcchhhhccccccccccccchhHHHHHHHHHHHHhCcCCCEEEEEeCCC
Confidence 88999999999998876 334456667899999998 888888875
No 73
>4fsd_A Arsenic methyltransferase; rossmann fold; 1.75A {Cyanidioschyzon SP} PDB: 4fr0_A* 4fs8_A 3p7e_A 3qnh_A 3qhu_A
Probab=99.41 E-value=5.5e-13 Score=146.51 Aligned_cols=119 Identities=18% Similarity=0.173 Sum_probs=91.2
Q ss_pred cCCCCEEEEEcCccchHHHHHhcCCCCCceEEEEeCChHHHHHHHHHHhhhhhcccccCCCCCCCccEEEEEcCcccc--
Q 002218 711 ESCATTLVDFGCGSGSLLDSLLDYPTALEKIVGVDISQKSLSRAAKIIHSKLSKKLDAAVPCTDVKSAVLFDGSITVF-- 788 (952)
Q Consensus 711 ~~k~krVLDIGCGeG~ll~~LAr~g~~~~qVVGVDISeemLe~ArkrLsa~la~~~~~l~Pr~~~~nVtf~qGDa~dL-- 788 (952)
..++.+|||||||+|.++..|++..++..+|+|+|+|+.+++.|++++....... .......++++.++|+.++
T Consensus 81 ~~~~~~VLDlGcG~G~~~~~la~~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~----~g~~~~~~v~~~~~d~~~l~~ 156 (383)
T 4fsd_A 81 SLEGATVLDLGCGTGRDVYLASKLVGEHGKVIGVDMLDNQLEVARKYVEYHAEKF----FGSPSRSNVRFLKGFIENLAT 156 (383)
T ss_dssp GGTTCEEEEESCTTSHHHHHHHHHHTTTCEEEEEECCHHHHHHHHHTHHHHHHHH----HSSTTCCCEEEEESCTTCGGG
T ss_pred CCCCCEEEEecCccCHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHhhhhc----ccccCCCceEEEEccHHHhhh
Confidence 3467899999999999999998763233799999999999999988764321000 0001124899999999987
Q ss_pred ----CCCCCCccEEEEccccccCChhHHHHHHHHHHHccCCC-EEEEEecCC
Q 002218 789 ----DSRLHGFDIGTCLEVIEHMEEDEASQFGNIVLSSFRPR-ILIVSTPNY 835 (952)
Q Consensus 789 ----pf~d~sFDVVVcieVIEHL~dD~l~~L~eeI~RvLKPG-~LIISTPN~ 835 (952)
++.+++||+|++..+++|++ +.. .+.+++.++|||| .+++.+++.
T Consensus 157 ~~~~~~~~~~fD~V~~~~~l~~~~-d~~-~~l~~~~r~LkpgG~l~i~~~~~ 206 (383)
T 4fsd_A 157 AEPEGVPDSSVDIVISNCVCNLST-NKL-ALFKEIHRVLRDGGELYFSDVYA 206 (383)
T ss_dssp CBSCCCCTTCEEEEEEESCGGGCS-CHH-HHHHHHHHHEEEEEEEEEEEEEE
T ss_pred cccCCCCCCCEEEEEEccchhcCC-CHH-HHHHHHHHHcCCCCEEEEEEecc
Confidence 77888999999999999998 443 4446799999999 777776653
No 74
>1p91_A Ribosomal RNA large subunit methyltransferase A; RLMA, RRMA, 23S rRNA, NESG, structural genomics, PSI, protein structure initiative; HET: SAM; 2.80A {Escherichia coli} SCOP: c.66.1.33
Probab=99.40 E-value=1.1e-12 Score=135.17 Aligned_cols=152 Identities=19% Similarity=0.201 Sum_probs=109.9
Q ss_pred hhhhccCcccchhcccccccccceeeeecccCC-----Chh--------hhhhhhcCCchhHHHHHHHHHHHhhcCCCCE
Q 002218 650 ILAAADDSARTFSLLSSRACCLEYHITLLRVTE-----PPE--------DRMEQALFSPPLSKQRVEYALQHIKESCATT 716 (952)
Q Consensus 650 ~lAa~~~~~~DiSlLs~d~~~LEyyI~LL~v~e-----p~E--------eRye~~~F~PPL~~QR~efVldlL~~~k~kr 716 (952)
.+.|.+.+..+++ .++|++++.... +.. ..+....++.++...-.+.+...+. .++.+
T Consensus 18 ~~~C~~~~~~~~~--------~~Gy~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~ 88 (269)
T 1p91_A 18 SYICPQRHQFDMA--------KEGYVNLLPVQHKRSRDPGDSAEMMQARRAFLDAGHYQPLRDAIVAQLRERLD-DKATA 88 (269)
T ss_dssp EEECTTCCEEEBC--------TTSCEECSCSSSSCSCCCSSSHHHHHHHHHHHTTTTTHHHHHHHHHHHHHHSC-TTCCE
T ss_pred EEECCCCCcCCcC--------CCEEEEeecccccCCCCCCCCHHHHHHHHHHHhCCCcHHHHHHHHHHHHHhcC-CCCCE
Confidence 4567777777765 566788775422 221 1133344555555544444444332 36789
Q ss_pred EEEEcCccchHHHHHhcCCCCCceEEEEeCChHHHHHHHHHHhhhhhcccccCCCCCCCccEEEEEcCccccCCCCCCcc
Q 002218 717 LVDFGCGSGSLLDSLLDYPTALEKIVGVDISQKSLSRAAKIIHSKLSKKLDAAVPCTDVKSAVLFDGSITVFDSRLHGFD 796 (952)
Q Consensus 717 VLDIGCGeG~ll~~LAr~g~~~~qVVGVDISeemLe~ArkrLsa~la~~~~~l~Pr~~~~nVtf~qGDa~dLpf~d~sFD 796 (952)
|||||||+|.++..+++.. +..+|+|+|+|+.+++.|+++. .++.+..+|+.++++.+++||
T Consensus 89 vLdiG~G~G~~~~~l~~~~-~~~~v~~vD~s~~~~~~a~~~~-----------------~~~~~~~~d~~~~~~~~~~fD 150 (269)
T 1p91_A 89 VLDIGCGEGYYTHAFADAL-PEITTFGLDVSKVAIKAAAKRY-----------------PQVTFCVASSHRLPFSDTSMD 150 (269)
T ss_dssp EEEETCTTSTTHHHHHHTC-TTSEEEEEESCHHHHHHHHHHC-----------------TTSEEEECCTTSCSBCTTCEE
T ss_pred EEEECCCCCHHHHHHHHhC-CCCeEEEEeCCHHHHHHHHHhC-----------------CCcEEEEcchhhCCCCCCcee
Confidence 9999999999999999873 1279999999999999997642 267899999999988888999
Q ss_pred EEEEccccccCChhHHHHHHHHHHHccCCC-EEEEEecCCch
Q 002218 797 IGTCLEVIEHMEEDEASQFGNIVLSSFRPR-ILIVSTPNYEY 837 (952)
Q Consensus 797 VVVcieVIEHL~dD~l~~L~eeI~RvLKPG-~LIISTPN~ef 837 (952)
+|++..+... .+++.++|||| .+++.+|+.+.
T Consensus 151 ~v~~~~~~~~---------l~~~~~~L~pgG~l~~~~~~~~~ 183 (269)
T 1p91_A 151 AIIRIYAPCK---------AEELARVVKPGGWVITATPGPRH 183 (269)
T ss_dssp EEEEESCCCC---------HHHHHHHEEEEEEEEEEEECTTT
T ss_pred EEEEeCChhh---------HHHHHHhcCCCcEEEEEEcCHHH
Confidence 9999776332 24699999998 88889998654
No 75
>2avn_A Ubiquinone/menaquinone biosynthesis methyltransfe related protein; ubiquinone/menaquinone biosynthesis methyltransferase-relate protein; HET: SAI; 2.35A {Thermotoga maritima} SCOP: c.66.1.41
Probab=99.40 E-value=1e-12 Score=135.49 Aligned_cols=101 Identities=18% Similarity=0.163 Sum_probs=86.2
Q ss_pred CCCEEEEEcCccchHHHHHhcCCCCCceEEEEeCChHHHHHHHHHHhhhhhcccccCCCCCCCccEEEEEcCccccCCCC
Q 002218 713 CATTLVDFGCGSGSLLDSLLDYPTALEKIVGVDISQKSLSRAAKIIHSKLSKKLDAAVPCTDVKSAVLFDGSITVFDSRL 792 (952)
Q Consensus 713 k~krVLDIGCGeG~ll~~LAr~g~~~~qVVGVDISeemLe~ArkrLsa~la~~~~~l~Pr~~~~nVtf~qGDa~dLpf~d 792 (952)
++.+|||||||+|.++..+++.+ .+|+|+|+|+.|++.|+++.. . .+.++|+.++++.+
T Consensus 54 ~~~~vLDiGcG~G~~~~~l~~~~---~~v~gvD~s~~~l~~a~~~~~-----------------~-~~~~~d~~~~~~~~ 112 (260)
T 2avn_A 54 NPCRVLDLGGGTGKWSLFLQERG---FEVVLVDPSKEMLEVAREKGV-----------------K-NVVEAKAEDLPFPS 112 (260)
T ss_dssp SCCEEEEETCTTCHHHHHHHTTT---CEEEEEESCHHHHHHHHHHTC-----------------S-CEEECCTTSCCSCT
T ss_pred CCCeEEEeCCCcCHHHHHHHHcC---CeEEEEeCCHHHHHHHHhhcC-----------------C-CEEECcHHHCCCCC
Confidence 67899999999999999999986 799999999999999987531 1 28889999998888
Q ss_pred CCccEEEEccccccCChhHHHHHHHHHHHccCCC-EEEEEecCC
Q 002218 793 HGFDIGTCLEVIEHMEEDEASQFGNIVLSSFRPR-ILIVSTPNY 835 (952)
Q Consensus 793 ~sFDVVVcieVIEHL~dD~l~~L~eeI~RvLKPG-~LIISTPN~ 835 (952)
+.||+|++..+++|+.++. ..+.+++.++|||| .+++.+||.
T Consensus 113 ~~fD~v~~~~~~~~~~~~~-~~~l~~~~~~LkpgG~l~~~~~~~ 155 (260)
T 2avn_A 113 GAFEAVLALGDVLSYVENK-DKAFSEIRRVLVPDGLLIATVDNF 155 (260)
T ss_dssp TCEEEEEECSSHHHHCSCH-HHHHHHHHHHEEEEEEEEEEEEBH
T ss_pred CCEEEEEEcchhhhccccH-HHHHHHHHHHcCCCeEEEEEeCCh
Confidence 8999999999888885454 44456799999999 888899885
No 76
>2vdw_A Vaccinia virus capping enzyme D1 subunit; nucleotidyltransferase, S-adenosyl-L-methionine, RNA metabolism, mRNA processing, methyltransferase, poxvirus; HET: SAH; 2.70A {Vaccinia virus}
Probab=99.40 E-value=5.5e-13 Score=143.10 Aligned_cols=117 Identities=12% Similarity=0.033 Sum_probs=84.1
Q ss_pred CCCEEEEEcCccchHHHHHhcCCCCCceEEEEeCChHHHHHHHHHHhhhhhcccccCCCCCCCccEEEEEcCc------c
Q 002218 713 CATTLVDFGCGSGSLLDSLLDYPTALEKIVGVDISQKSLSRAAKIIHSKLSKKLDAAVPCTDVKSAVLFDGSI------T 786 (952)
Q Consensus 713 k~krVLDIGCGeG~ll~~LAr~g~~~~qVVGVDISeemLe~ArkrLsa~la~~~~~l~Pr~~~~nVtf~qGDa------~ 786 (952)
++.+|||||||+|..+..+++.+. .+|+|+|+|+.||+.|+++........ +....+++|.++|+ .
T Consensus 48 ~~~~VLDlGCG~G~~l~~~~~~~~--~~v~GiD~S~~~l~~A~~~~~~~~~~~------~~~~~~~~f~~~d~~~d~~~~ 119 (302)
T 2vdw_A 48 NKRKVLAIDFGNGADLEKYFYGEI--ALLVATDPDADAIARGNERYNKLNSGI------KTKYYKFDYIQETIRSDTFVS 119 (302)
T ss_dssp SCCEEEETTCTTTTTHHHHHHTTC--SEEEEEESCHHHHHHHHHHHHHHCC----------CCCEEEEEECCTTSSSHHH
T ss_pred CCCeEEEEecCCcHhHHHHHhcCC--CeEEEEECCHHHHHHHHHHHHhccccc------cccccccchhhhhcccchhhh
Confidence 367999999999987765555442 689999999999999998764311000 00111467888887 3
Q ss_pred cc--CCCCCCccEEEEccccccCC-hhHHHHHHHHHHHccCCC-EEEEEecCCch
Q 002218 787 VF--DSRLHGFDIGTCLEVIEHME-EDEASQFGNIVLSSFRPR-ILIVSTPNYEY 837 (952)
Q Consensus 787 dL--pf~d~sFDVVVcieVIEHL~-dD~l~~L~eeI~RvLKPG-~LIISTPN~ef 837 (952)
++ ++.+++||+|+|.+++||+. .+....+.+++.++|||| .+++++||.+.
T Consensus 120 ~l~~~~~~~~FD~V~~~~~lhy~~~~~~~~~~l~~~~r~LkpGG~~i~~~~~~~~ 174 (302)
T 2vdw_A 120 SVREVFYFGKFNIIDWQFAIHYSFHPRHYATVMNNLSELTASGGKVLITTMDGDK 174 (302)
T ss_dssp HHHTTCCSSCEEEEEEESCGGGTCSTTTHHHHHHHHHHHEEEEEEEEEEEECHHH
T ss_pred hhhccccCCCeeEEEECchHHHhCCHHHHHHHHHHHHHHcCCCCEEEEEeCCHHH
Confidence 33 23567999999999999862 223356667899999999 89999998543
No 77
>1dus_A MJ0882; hypothetical protein, methanococcus jannaschii, structural genomics, BSGC structure funded by NIH; 1.80A {Methanocaldococcus jannaschii} SCOP: c.66.1.4
Probab=99.40 E-value=2e-12 Score=124.32 Aligned_cols=128 Identities=12% Similarity=0.109 Sum_probs=98.0
Q ss_pred CCchhHHHHHHHHHHHhhcCCCCEEEEEcCccchHHHHHhcCCCCCceEEEEeCChHHHHHHHHHHhhhhhcccccCCCC
Q 002218 693 FSPPLSKQRVEYALQHIKESCATTLVDFGCGSGSLLDSLLDYPTALEKIVGVDISQKSLSRAAKIIHSKLSKKLDAAVPC 772 (952)
Q Consensus 693 F~PPL~~QR~efVldlL~~~k~krVLDIGCGeG~ll~~LAr~g~~~~qVVGVDISeemLe~ArkrLsa~la~~~~~l~Pr 772 (952)
|.|+......+.+.+.+...++.+|||+|||+|.++..+++.+ .+++|+|+++.+++.|++++..
T Consensus 32 ~~~~~~~~~~~~l~~~~~~~~~~~vLdiG~G~G~~~~~~~~~~---~~v~~~D~~~~~~~~a~~~~~~------------ 96 (194)
T 1dus_A 32 FSYGKVDKGTKILVENVVVDKDDDILDLGCGYGVIGIALADEV---KSTTMADINRRAIKLAKENIKL------------ 96 (194)
T ss_dssp TTTTSCCHHHHHHHHHCCCCTTCEEEEETCTTSHHHHHHGGGS---SEEEEEESCHHHHHHHHHHHHH------------
T ss_pred CCccccchHHHHHHHHcccCCCCeEEEeCCCCCHHHHHHHHcC---CeEEEEECCHHHHHHHHHHHHH------------
Confidence 4444222334456666666678899999999999999999875 7999999999999999887642
Q ss_pred CCCcc--EEEEEcCccccCCCCCCccEEEEccccccCChhHHHHHHHHHHHccCCC-EEEEEecCCch
Q 002218 773 TDVKS--AVLFDGSITVFDSRLHGFDIGTCLEVIEHMEEDEASQFGNIVLSSFRPR-ILIVSTPNYEY 837 (952)
Q Consensus 773 ~~~~n--Vtf~qGDa~dLpf~d~sFDVVVcieVIEHL~dD~l~~L~eeI~RvLKPG-~LIISTPN~ef 837 (952)
.+..+ +++.++|+.+. ...+.||+|++..+++|.. +....+.+++.++|+|| .+++.+++...
T Consensus 97 ~~~~~~~~~~~~~d~~~~-~~~~~~D~v~~~~~~~~~~-~~~~~~l~~~~~~L~~gG~l~~~~~~~~~ 162 (194)
T 1dus_A 97 NNLDNYDIRVVHSDLYEN-VKDRKYNKIITNPPIRAGK-EVLHRIIEEGKELLKDNGEIWVVIQTKQG 162 (194)
T ss_dssp TTCTTSCEEEEECSTTTT-CTTSCEEEEEECCCSTTCH-HHHHHHHHHHHHHEEEEEEEEEEEESTHH
T ss_pred cCCCccceEEEECchhcc-cccCCceEEEECCCcccch-hHHHHHHHHHHHHcCCCCEEEEEECCCCC
Confidence 12334 99999999874 3467899999998887744 44455567899999998 88888887643
No 78
>3lbf_A Protein-L-isoaspartate O-methyltransferase; modified rossman-type fold, S-adenosyl-L- methionine; HET: SAH; 1.80A {Escherichia coli}
Probab=99.39 E-value=1.3e-12 Score=129.44 Aligned_cols=110 Identities=13% Similarity=0.119 Sum_probs=93.5
Q ss_pred HHHHHHHhhcCCCCEEEEEcCccchHHHHHhcCCCCCceEEEEeCChHHHHHHHHHHhhhhhcccccCCCCCCCccEEEE
Q 002218 702 VEYALQHIKESCATTLVDFGCGSGSLLDSLLDYPTALEKIVGVDISQKSLSRAAKIIHSKLSKKLDAAVPCTDVKSAVLF 781 (952)
Q Consensus 702 ~efVldlL~~~k~krVLDIGCGeG~ll~~LAr~g~~~~qVVGVDISeemLe~ArkrLsa~la~~~~~l~Pr~~~~nVtf~ 781 (952)
...+.+.+...++.+|||||||+|.++..+++.+ .+|+|+|+++.+++.|++++.. .+..++++.
T Consensus 66 ~~~~~~~l~~~~~~~vLdiG~G~G~~~~~la~~~---~~v~~vD~~~~~~~~a~~~~~~------------~~~~~v~~~ 130 (210)
T 3lbf_A 66 VARMTELLELTPQSRVLEIGTGSGYQTAILAHLV---QHVCSVERIKGLQWQARRRLKN------------LDLHNVSTR 130 (210)
T ss_dssp HHHHHHHTTCCTTCEEEEECCTTSHHHHHHHHHS---SEEEEEESCHHHHHHHHHHHHH------------TTCCSEEEE
T ss_pred HHHHHHhcCCCCCCEEEEEcCCCCHHHHHHHHhC---CEEEEEecCHHHHHHHHHHHHH------------cCCCceEEE
Confidence 3456666676788999999999999999999886 7999999999999999987653 233479999
Q ss_pred EcCccccCCCCCCccEEEEccccccCChhHHHHHHHHHHHccCCC-EEEEEecC
Q 002218 782 DGSITVFDSRLHGFDIGTCLEVIEHMEEDEASQFGNIVLSSFRPR-ILIVSTPN 834 (952)
Q Consensus 782 qGDa~dLpf~d~sFDVVVcieVIEHL~dD~l~~L~eeI~RvLKPG-~LIISTPN 834 (952)
++|+.+.....+.||+|++..+++|+++ .+.++|||| .++++.++
T Consensus 131 ~~d~~~~~~~~~~~D~i~~~~~~~~~~~--------~~~~~L~pgG~lv~~~~~ 176 (210)
T 3lbf_A 131 HGDGWQGWQARAPFDAIIVTAAPPEIPT--------ALMTQLDEGGILVLPVGE 176 (210)
T ss_dssp ESCGGGCCGGGCCEEEEEESSBCSSCCT--------HHHHTEEEEEEEEEEECS
T ss_pred ECCcccCCccCCCccEEEEccchhhhhH--------HHHHhcccCcEEEEEEcC
Confidence 9999887666789999999999999983 478899999 88888887
No 79
>2r3s_A Uncharacterized protein; methyltransferase domain, structural genomics, joint center structural genomics, JCSG, protein structure initiative; HET: MSE; 2.15A {Nostoc punctiforme}
Probab=99.39 E-value=2.4e-12 Score=136.54 Aligned_cols=159 Identities=13% Similarity=0.087 Sum_probs=112.0
Q ss_pred HHHHHhhc--CCCCEEEEEcCccchHHHHHhcCCCCCceEEEEeCChHHHHHHHHHHhhhhhcccccCCCCCCCccEEEE
Q 002218 704 YALQHIKE--SCATTLVDFGCGSGSLLDSLLDYPTALEKIVGVDISQKSLSRAAKIIHSKLSKKLDAAVPCTDVKSAVLF 781 (952)
Q Consensus 704 fVldlL~~--~k~krVLDIGCGeG~ll~~LAr~g~~~~qVVGVDISeemLe~ArkrLsa~la~~~~~l~Pr~~~~nVtf~ 781 (952)
.+.+.+.. .+..+|||+|||+|.++..+++.. +..+++|+|++ .+++.|++++... ....++++.
T Consensus 154 ~~~~~~~~~~~~~~~vlDvG~G~G~~~~~l~~~~-p~~~~~~~D~~-~~~~~a~~~~~~~-----------~~~~~v~~~ 220 (335)
T 2r3s_A 154 LIAQLVNENKIEPLKVLDISASHGLFGIAVAQHN-PNAEIFGVDWA-SVLEVAKENARIQ-----------GVASRYHTI 220 (335)
T ss_dssp HHHHHHTC--CCCSEEEEETCTTCHHHHHHHHHC-TTCEEEEEECH-HHHHHHHHHHHHH-----------TCGGGEEEE
T ss_pred HHHHhcccccCCCCEEEEECCCcCHHHHHHHHHC-CCCeEEEEecH-HHHHHHHHHHHhc-----------CCCcceEEE
Confidence 44455554 567899999999999999998874 33799999999 9999998876431 112369999
Q ss_pred EcCccccCCCCCCccEEEEccccccCChhHHHHHHHHHHHccCCC-EEEEEecCCchh---HHHHhhccCccCCCCcchh
Q 002218 782 DGSITVFDSRLHGFDIGTCLEVIEHMEEDEASQFGNIVLSSFRPR-ILIVSTPNYEYN---AILQKSSSTIQEDDPDEKT 857 (952)
Q Consensus 782 qGDa~dLpf~d~sFDVVVcieVIEHL~dD~l~~L~eeI~RvLKPG-~LIISTPN~efN---~lf~~L~~~ta~eYPde~~ 857 (952)
.+|+.+.+++. +||+|++..+++|++++....+.+++.++|+|| .+++..+..... +.+..+..
T Consensus 221 ~~d~~~~~~~~-~~D~v~~~~~l~~~~~~~~~~~l~~~~~~L~pgG~l~i~e~~~~~~~~~~~~~~~~~----------- 288 (335)
T 2r3s_A 221 AGSAFEVDYGN-DYDLVLLPNFLHHFDVATCEQLLRKIKTALAVEGKVIVFDFIPNSDRITPPDAAAFS----------- 288 (335)
T ss_dssp ESCTTTSCCCS-CEEEEEEESCGGGSCHHHHHHHHHHHHHHEEEEEEEEEEECCCCTTSSCSHHHHHHH-----------
T ss_pred ecccccCCCCC-CCcEEEEcchhccCCHHHHHHHHHHHHHhCCCCcEEEEEeecCCCCcCCchHHHHHH-----------
Confidence 99998876544 499999999999998776677778899999998 677766643211 11111100
Q ss_pred hhccccccCCCCccccCHHHHHHHHHHHHHHcCcEEE
Q 002218 858 QLQSCKFRNHDHKFEWTRDQFNCWATELAARHNYSVE 894 (952)
Q Consensus 858 g~~~~~fRh~DHkFEWTReEFqsWae~La~q~GYsVe 894 (952)
..-.....+..+++.+++.+ ++++.||.+.
T Consensus 289 ---~~~~~~~~~~~~~t~~~~~~----ll~~aGf~~~ 318 (335)
T 2r3s_A 289 ---LVMLATTPNGDAYTFAEYES----MFSNAGFSHS 318 (335)
T ss_dssp ---HHHHHHSSSCCCCCHHHHHH----HHHHTTCSEE
T ss_pred ---HHHHeeCCCCCcCCHHHHHH----HHHHCCCCee
Confidence 00011112345689999985 5667899763
No 80
>3iv6_A Putative Zn-dependent alcohol dehydrogenase; alpha/beta fold, rossmann-fold, structural genomics, PSI-2, structure initiative; HET: SAM; 2.70A {Rhodobacter sphaeroides}
Probab=99.39 E-value=2.2e-12 Score=136.98 Aligned_cols=122 Identities=16% Similarity=0.098 Sum_probs=91.5
Q ss_pred HHHHHHHHHhhcCCCCEEEEEcCccchHHHHHhcCCCCCceEEEEeCChHHHHHHHHHHhhhhhcccccCCCCCCCccEE
Q 002218 700 QRVEYALQHIKESCATTLVDFGCGSGSLLDSLLDYPTALEKIVGVDISQKSLSRAAKIIHSKLSKKLDAAVPCTDVKSAV 779 (952)
Q Consensus 700 QR~efVldlL~~~k~krVLDIGCGeG~ll~~LAr~g~~~~qVVGVDISeemLe~ArkrLsa~la~~~~~l~Pr~~~~nVt 779 (952)
.+.+.+++.+...++.+|||||||+|.++..|++.+ .+|+|||+|+.|++.|++++.. ...++.
T Consensus 32 ~~~~~il~~l~l~~g~~VLDlGcGtG~~a~~La~~g---~~V~gvD~S~~ml~~Ar~~~~~-------------~~v~~~ 95 (261)
T 3iv6_A 32 SDRENDIFLENIVPGSTVAVIGASTRFLIEKALERG---ASVTVFDFSQRMCDDLAEALAD-------------RCVTID 95 (261)
T ss_dssp CHHHHHHHTTTCCTTCEEEEECTTCHHHHHHHHHTT---CEEEEEESCHHHHHHHHHHTSS-------------SCCEEE
T ss_pred HHHHHHHHhcCCCCcCEEEEEeCcchHHHHHHHhcC---CEEEEEECCHHHHHHHHHHHHh-------------ccceee
Confidence 455667777777788999999999999999999987 7999999999999999887531 111233
Q ss_pred EEEcCccccCCCCCCccEEEEccccccCChhHHHHHHHHHHHccCCC-EEEEEecCCchh
Q 002218 780 LFDGSITVFDSRLHGFDIGTCLEVIEHMEEDEASQFGNIVLSSFRPR-ILIVSTPNYEYN 838 (952)
Q Consensus 780 f~qGDa~dLpf~d~sFDVVVcieVIEHL~dD~l~~L~eeI~RvLKPG-~LIISTPN~efN 838 (952)
+...+........+.||+|++..+++|+..+....+..++.++| || .++++.+...+.
T Consensus 96 ~~~~~~~~~~~~~~~fD~Vv~~~~l~~~~~~~~~~~l~~l~~lL-PGG~l~lS~~~g~~~ 154 (261)
T 3iv6_A 96 LLDITAEIPKELAGHFDFVLNDRLINRFTTEEARRACLGMLSLV-GSGTVRASVKLGFYD 154 (261)
T ss_dssp ECCTTSCCCGGGTTCCSEEEEESCGGGSCHHHHHHHHHHHHHHH-TTSEEEEEEEBSCCH
T ss_pred eeecccccccccCCCccEEEEhhhhHhCCHHHHHHHHHHHHHhC-cCcEEEEEeccCccc
Confidence 32222200111246899999999999998777666667899999 98 888888765443
No 81
>2a14_A Indolethylamine N-methyltransferase; SGC,INMT, structural genomics, structural genomics consortium; HET: SAH; 1.70A {Homo sapiens} SCOP: c.66.1.15
Probab=99.39 E-value=7.4e-13 Score=137.63 Aligned_cols=160 Identities=12% Similarity=0.010 Sum_probs=101.5
Q ss_pred CCCCEEEEEcCccchHHHHHhcCCCCCceEEEEeCChHHHHHHHHHHhhhhhccc-----cc---CCC-CC--------C
Q 002218 712 SCATTLVDFGCGSGSLLDSLLDYPTALEKIVGVDISQKSLSRAAKIIHSKLSKKL-----DA---AVP-CT--------D 774 (952)
Q Consensus 712 ~k~krVLDIGCGeG~ll~~LAr~g~~~~qVVGVDISeemLe~ArkrLsa~la~~~-----~~---l~P-r~--------~ 774 (952)
.++.+|||||||+|.+...++..+ ..+|+|+|+|+.|++.|++++.......- .+ +.. +. .
T Consensus 54 ~~g~~vLDiGCG~G~~~~~~~~~~--~~~v~g~D~s~~~l~~a~~~~~~~~~~~d~s~~~~~~~~~~~~~~~~~~~~~~~ 131 (263)
T 2a14_A 54 LQGDTLIDIGSGPTIYQVLAACDS--FQDITLSDFTDRNREELEKWLKKEPGAYDWTPAVKFACELEGNSGRWEEKEEKL 131 (263)
T ss_dssp CCEEEEEESSCTTCCGGGTTGGGT--EEEEEEEESCHHHHHHHHHHHHTCTTCCCCHHHHHHHHHHTTCGGGHHHHHHHH
T ss_pred CCCceEEEeCCCccHHHHHHHHhh--hcceeeccccHHHHHHHHHHHhcCCCcccchHHHHHHHhcCCCCcchhhHHHHH
Confidence 466799999999999887776665 24799999999999999887642110000 00 000 00 0
Q ss_pred CccEE-EEEcCcccc-CC---CCCCccEEEEccccccCCh--hHHHHHHHHHHHccCCC-EEEEEecCCchhHHHHhhcc
Q 002218 775 VKSAV-LFDGSITVF-DS---RLHGFDIGTCLEVIEHMEE--DEASQFGNIVLSSFRPR-ILIVSTPNYEYNAILQKSSS 846 (952)
Q Consensus 775 ~~nVt-f~qGDa~dL-pf---~d~sFDVVVcieVIEHL~d--D~l~~L~eeI~RvLKPG-~LIISTPN~efN~lf~~L~~ 846 (952)
..++. +.++|+.+. ++ ...+||+|+++.++||+.+ +....+.+++.++|||| .++++++..+-
T Consensus 132 ~~~i~~~~~~D~~~~~~~~~~~~~~fD~V~~~~~l~~i~~~~~~~~~~l~~i~r~LKPGG~li~~~~~~~~--------- 202 (263)
T 2a14_A 132 RAAVKRVLKCDVHLGNPLAPAVLPLADCVLTLLAMECACCSLDAYRAALCNLASLLKPGGHLVTTVTLRLP--------- 202 (263)
T ss_dssp HHHEEEEEECCTTSSSTTTTCCCCCEEEEEEESCHHHHCSSHHHHHHHHHHHHTTEEEEEEEEEEEESSCC---------
T ss_pred HhhhheEEeccccCCCCCCccccCCCCEeeehHHHHHhcCCHHHHHHHHHHHHHHcCCCcEEEEEEeecCc---------
Confidence 11354 899999884 32 2568999999999999742 33344556799999999 77777643210
Q ss_pred CccCCCCcchhhhccccccCCCCccccCHHHHHHHHHHHHHHcCcEEE-EEeec
Q 002218 847 TIQEDDPDEKTQLQSCKFRNHDHKFEWTRDQFNCWATELAARHNYSVE-FSGVG 899 (952)
Q Consensus 847 ~ta~eYPde~~g~~~~~fRh~DHkFEWTReEFqsWae~La~q~GYsVe-fsGVG 899 (952)
.| .... ... +.+.++++++. +++.+.||.+. .....
T Consensus 203 ----~~-------~~g~-~~~-~~~~~~~~~l~----~~l~~aGF~i~~~~~~~ 239 (263)
T 2a14_A 203 ----SY-------MVGK-REF-SCVALEKGEVE----QAVLDAGFDIEQLLHSP 239 (263)
T ss_dssp ----EE-------EETT-EEE-ECCCCCHHHHH----HHHHHTTEEEEEEEEEC
T ss_pred ----cc-------eeCC-eEe-eccccCHHHHH----HHHHHCCCEEEEEeecc
Confidence 00 0000 000 11357888888 56778899885 44443
No 82
>3p9n_A Possible methyltransferase (methylase); RV2966C, adoMet binding, RNA methylase, RSMD, SAM-fold, RNA methyltransferase; 1.90A {Mycobacterium tuberculosis}
Probab=99.38 E-value=2.4e-12 Score=126.30 Aligned_cols=118 Identities=16% Similarity=0.121 Sum_probs=90.8
Q ss_pred HHHHHHhhc---CCCCEEEEEcCccchHHHHHhcCCCCCceEEEEeCChHHHHHHHHHHhhhhhcccccCCCCCCCccEE
Q 002218 703 EYALQHIKE---SCATTLVDFGCGSGSLLDSLLDYPTALEKIVGVDISQKSLSRAAKIIHSKLSKKLDAAVPCTDVKSAV 779 (952)
Q Consensus 703 efVldlL~~---~k~krVLDIGCGeG~ll~~LAr~g~~~~qVVGVDISeemLe~ArkrLsa~la~~~~~l~Pr~~~~nVt 779 (952)
+.+.+.+.. .++.+|||+|||+|.++..+++.+. .+|+|+|+|+.+++.|++++... +..+++
T Consensus 31 ~~l~~~l~~~~~~~~~~vLDlgcG~G~~~~~~~~~~~--~~v~~vD~~~~~~~~a~~~~~~~------------~~~~v~ 96 (189)
T 3p9n_A 31 ESLFNIVTARRDLTGLAVLDLYAGSGALGLEALSRGA--ASVLFVESDQRSAAVIARNIEAL------------GLSGAT 96 (189)
T ss_dssp HHHHHHHHHHSCCTTCEEEEETCTTCHHHHHHHHTTC--SEEEEEECCHHHHHHHHHHHHHH------------TCSCEE
T ss_pred HHHHHHHHhccCCCCCEEEEeCCCcCHHHHHHHHCCC--CeEEEEECCHHHHHHHHHHHHHc------------CCCceE
Confidence 344444433 5778999999999999998887652 68999999999999999876532 235799
Q ss_pred EEEcCccccC--CCCCCccEEEEccccccCChhHHHHHHHHHHH--ccCCC-EEEEEecCC
Q 002218 780 LFDGSITVFD--SRLHGFDIGTCLEVIEHMEEDEASQFGNIVLS--SFRPR-ILIVSTPNY 835 (952)
Q Consensus 780 f~qGDa~dLp--f~d~sFDVVVcieVIEHL~dD~l~~L~eeI~R--vLKPG-~LIISTPN~ 835 (952)
++++|+.++. +....||+|++...++|..++. ..+.+.+.+ +|+|| .+++.++..
T Consensus 97 ~~~~d~~~~~~~~~~~~fD~i~~~~p~~~~~~~~-~~~l~~~~~~~~L~pgG~l~~~~~~~ 156 (189)
T 3p9n_A 97 LRRGAVAAVVAAGTTSPVDLVLADPPYNVDSADV-DAILAALGTNGWTREGTVAVVERATT 156 (189)
T ss_dssp EEESCHHHHHHHCCSSCCSEEEECCCTTSCHHHH-HHHHHHHHHSSSCCTTCEEEEEEETT
T ss_pred EEEccHHHHHhhccCCCccEEEECCCCCcchhhH-HHHHHHHHhcCccCCCeEEEEEecCC
Confidence 9999998864 2367899999988877764333 444456888 99999 888887764
No 83
>2g72_A Phenylethanolamine N-methyltransferase; HET: SAM F21; 2.00A {Homo sapiens} SCOP: c.66.1.15 PDB: 1yz3_A* 2an4_A* 2an5_A* 2g70_A* 2g71_A* 2an3_A* 2g8n_A* 2ony_A* 3hcb_A* 3hcc_A* 3hcd_A* 3hcf_A* 3kpj_A* 3kpu_A* 3kpv_A* 3kpw_A* 3kpy_A* 3kqm_A* 3kqo_A* 3kqp_A* ...
Probab=99.38 E-value=2.1e-12 Score=135.05 Aligned_cols=126 Identities=12% Similarity=0.025 Sum_probs=81.8
Q ss_pred HHHHHhhc--CCCCEEEEEcCccchHHHHHhcCCCCCceEEEEeCChHHHHHHHHHHhhhhhc---------ccccCCCC
Q 002218 704 YALQHIKE--SCATTLVDFGCGSGSLLDSLLDYPTALEKIVGVDISQKSLSRAAKIIHSKLSK---------KLDAAVPC 772 (952)
Q Consensus 704 fVldlL~~--~k~krVLDIGCGeG~ll~~LAr~g~~~~qVVGVDISeemLe~ArkrLsa~la~---------~~~~l~Pr 772 (952)
.+.+.+.. .++.+|||||||+|.+...++.... .+|+|+|+|+.|++.|++++...... ........
T Consensus 60 ~l~~~l~~~~~~~~~vLDiGcG~G~~~~l~~~~~~--~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~v~~~~~~~ 137 (289)
T 2g72_A 60 CLAQTFATGEVSGRTLIDIGSGPTVYQLLSACSHF--EDITMTDFLEVNRQELGRWLQEEPGAFNWSMYSQHACLIEGKG 137 (289)
T ss_dssp HHHHHHHTSCSCCSEEEEETCTTCCGGGTTGGGGC--SEEEEECSCHHHHHHHHHHHTTCTTCCCCHHHHHHHHHHHCSC
T ss_pred HHHHHhCCCCCCCCeEEEECCCcChHHHHhhccCC--CeEEEeCCCHHHHHHHHHHHhhCcccccchhhhhHHHHhcCcc
Confidence 34444433 3678999999999996554444322 69999999999999998865321000 00000000
Q ss_pred C---------CCccEEEEEcCccc-cCC-----CCCCccEEEEccccccCChh--HHHHHHHHHHHccCCC-EEEEE
Q 002218 773 T---------DVKSAVLFDGSITV-FDS-----RLHGFDIGTCLEVIEHMEED--EASQFGNIVLSSFRPR-ILIVS 831 (952)
Q Consensus 773 ~---------~~~nVtf~qGDa~d-Lpf-----~d~sFDVVVcieVIEHL~dD--~l~~L~eeI~RvLKPG-~LIIS 831 (952)
. ....+++.++|+.+ +++ ..++||+|++..+++|+.++ ....+.+++.++|||| .+++.
T Consensus 138 ~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~fD~V~~~~~l~~~~~~~~~~~~~l~~~~r~LkpGG~l~~~ 214 (289)
T 2g72_A 138 ECWQDKERQLRARVKRVLPIDVHQPQPLGAGSPAPLPADALVSAFCLEAVSPDLASFQRALDHITTLLRPGGHLLLI 214 (289)
T ss_dssp CCHHHHHHHHHHHEEEEECCCTTSSSTTCSSCSSCSSEEEEEEESCHHHHCSSHHHHHHHHHHHHTTEEEEEEEEEE
T ss_pred cchhhhHHHHHhhhceEEecccCCCCCccccccCCCCCCEEEehhhhhhhcCCHHHHHHHHHHHHHhcCCCCEEEEE
Confidence 0 00126788889987 553 24569999999999996533 3445556899999999 66665
No 84
>3bgv_A MRNA CAP guanine-N7 methyltransferase; alternative splicing, mRNA capping, mRNA processing, nucleus, phosphoprotein, RNA-binding; HET: SAH; 2.30A {Homo sapiens} PDB: 3epp_A*
Probab=99.37 E-value=2.1e-12 Score=136.76 Aligned_cols=117 Identities=23% Similarity=0.256 Sum_probs=90.1
Q ss_pred CCCEEEEEcCccchHHHHHhcCCCCCceEEEEeCChHHHHHHHHHHhhhhhcccccCCCCCCCccEEEEEcCccccC---
Q 002218 713 CATTLVDFGCGSGSLLDSLLDYPTALEKIVGVDISQKSLSRAAKIIHSKLSKKLDAAVPCTDVKSAVLFDGSITVFD--- 789 (952)
Q Consensus 713 k~krVLDIGCGeG~ll~~LAr~g~~~~qVVGVDISeemLe~ArkrLsa~la~~~~~l~Pr~~~~nVtf~qGDa~dLp--- 789 (952)
++.+|||||||+|.++..+++.+ ..+|+|+|+|+.|++.|+++........ +.....++++.++|+.+++
T Consensus 34 ~~~~VLDlGcG~G~~~~~l~~~~--~~~v~gvD~s~~~l~~a~~~~~~~~~~~-----~~~~~~~~~~~~~D~~~~~~~~ 106 (313)
T 3bgv_A 34 RDITVLDLGCGKGGDLLKWKKGR--INKLVCTDIADVSVKQCQQRYEDMKNRR-----DSEYIFSAEFITADSSKELLID 106 (313)
T ss_dssp -CCEEEEETCTTTTTHHHHHHTT--CSEEEEEESCHHHHHHHHHHHHHHHSSS-----CC-CCCEEEEEECCTTTSCSTT
T ss_pred CCCEEEEECCCCcHHHHHHHhcC--CCEEEEEeCCHHHHHHHHHHHHHhhhcc-----cccccceEEEEEecccccchhh
Confidence 67899999999999999998754 3799999999999999998764321000 0012347999999999876
Q ss_pred -CC--CCCccEEEEccccccC-C-hhHHHHHHHHHHHccCCC-EEEEEecCCc
Q 002218 790 -SR--LHGFDIGTCLEVIEHM-E-EDEASQFGNIVLSSFRPR-ILIVSTPNYE 836 (952)
Q Consensus 790 -f~--d~sFDVVVcieVIEHL-~-dD~l~~L~eeI~RvLKPG-~LIISTPN~e 836 (952)
+. .++||+|+|..++||+ . .+....+.+++.++|||| .+++++|+.+
T Consensus 107 ~~~~~~~~fD~V~~~~~l~~~~~~~~~~~~~l~~~~~~LkpgG~li~~~~~~~ 159 (313)
T 3bgv_A 107 KFRDPQMCFDICSCQFVCHYSFESYEQADMMLRNACERLSPGGYFIGTTPNSF 159 (313)
T ss_dssp TCSSTTCCEEEEEEETCGGGGGGSHHHHHHHHHHHHTTEEEEEEEEEEEECHH
T ss_pred hcccCCCCEEEEEEecchhhccCCHHHHHHHHHHHHHHhCCCcEEEEecCChH
Confidence 43 4589999999999998 3 234456667899999999 8999999853
No 85
>3mcz_A O-methyltransferase; adomet_mtases, S-adenosylmethionine-dependent methyltransfer structural genomics, PSI-2; HET: MSE; 1.90A {Burkholderia thailandensis}
Probab=99.36 E-value=7.6e-12 Score=134.35 Aligned_cols=161 Identities=15% Similarity=0.108 Sum_probs=112.2
Q ss_pred HHHHhhcCC-CCEEEEEcCccchHHHHHhcCCCCCceEEEEeCChHHHHHHHHHHhhhhhcccccCCCCCCCccEEEEEc
Q 002218 705 ALQHIKESC-ATTLVDFGCGSGSLLDSLLDYPTALEKIVGVDISQKSLSRAAKIIHSKLSKKLDAAVPCTDVKSAVLFDG 783 (952)
Q Consensus 705 VldlL~~~k-~krVLDIGCGeG~ll~~LAr~g~~~~qVVGVDISeemLe~ArkrLsa~la~~~~~l~Pr~~~~nVtf~qG 783 (952)
+++.+...+ +.+|||||||+|.++..+++.. +..+++++|+ +.+++.|++++... ....++++..+
T Consensus 170 ~l~~~~~~~~~~~vlDvG~G~G~~~~~l~~~~-p~~~~~~~D~-~~~~~~a~~~~~~~-----------~~~~~v~~~~~ 236 (352)
T 3mcz_A 170 VVSELGVFARARTVIDLAGGHGTYLAQVLRRH-PQLTGQIWDL-PTTRDAARKTIHAH-----------DLGGRVEFFEK 236 (352)
T ss_dssp HHHTCGGGTTCCEEEEETCTTCHHHHHHHHHC-TTCEEEEEEC-GGGHHHHHHHHHHT-----------TCGGGEEEEEC
T ss_pred HHHhCCCcCCCCEEEEeCCCcCHHHHHHHHhC-CCCeEEEEEC-HHHHHHHHHHHHhc-----------CCCCceEEEeC
Confidence 444444445 7899999999999999999875 3479999999 88999998876431 12347999999
Q ss_pred CccccCC-CCCCccEEEEccccccCChhHHHHHHHHHHHccCCC-EEEEEecCCch---hHHHHhhccCccCCCCcchhh
Q 002218 784 SITVFDS-RLHGFDIGTCLEVIEHMEEDEASQFGNIVLSSFRPR-ILIVSTPNYEY---NAILQKSSSTIQEDDPDEKTQ 858 (952)
Q Consensus 784 Da~dLpf-~d~sFDVVVcieVIEHL~dD~l~~L~eeI~RvLKPG-~LIISTPN~ef---N~lf~~L~~~ta~eYPde~~g 858 (952)
|+.+.+. ...+||+|++..++||++++....+.+++.++|+|| .++|..+...- .+.+..+..
T Consensus 237 d~~~~~~~~~~~~D~v~~~~vlh~~~~~~~~~~l~~~~~~L~pgG~l~i~e~~~~~~~~~~~~~~~~~------------ 304 (352)
T 3mcz_A 237 NLLDARNFEGGAADVVMLNDCLHYFDAREAREVIGHAAGLVKPGGALLILTMTMNDDRVTPALSADFS------------ 304 (352)
T ss_dssp CTTCGGGGTTCCEEEEEEESCGGGSCHHHHHHHHHHHHHTEEEEEEEEEEEECCCTTSSSSHHHHHHH------------
T ss_pred CcccCcccCCCCccEEEEecccccCCHHHHHHHHHHHHHHcCCCCEEEEEEeccCCCCCCCchHHHhh------------
Confidence 9988752 345699999999999999776677778899999998 66665542211 111111100
Q ss_pred hccccccCCCCccccCHHHHHHHHHHHHHHcCcEEEEE
Q 002218 859 LQSCKFRNHDHKFEWTRDQFNCWATELAARHNYSVEFS 896 (952)
Q Consensus 859 ~~~~~fRh~DHkFEWTReEFqsWae~La~q~GYsVefs 896 (952)
..-.....+..+++.+++. +++++.||.+.-.
T Consensus 305 --~~~~~~~~~~~~~t~~e~~----~ll~~aGf~~~~~ 336 (352)
T 3mcz_A 305 --LHMMVNTNHGELHPTPWIA----GVVRDAGLAVGER 336 (352)
T ss_dssp --HHHHHHSTTCCCCCHHHHH----HHHHHTTCEEEEE
T ss_pred --HHHHhhCCCCCcCCHHHHH----HHHHHCCCceeee
Confidence 0001112234467888888 4567889988653
No 86
>3hm2_A Precorrin-6Y C5,15-methyltransferase; alpha-beta-sandwich, structural genomics, PSI-2, protein structure initiative; 2.21A {Corynebacterium diphtheriae}
Probab=99.36 E-value=6.9e-12 Score=120.12 Aligned_cols=114 Identities=17% Similarity=0.088 Sum_probs=87.4
Q ss_pred HHHHHHHhhcCCCCEEEEEcCccchHHHHHhcCCCCCceEEEEeCChHHHHHHHHHHhhhhhcccccCCCCCCCc-cEEE
Q 002218 702 VEYALQHIKESCATTLVDFGCGSGSLLDSLLDYPTALEKIVGVDISQKSLSRAAKIIHSKLSKKLDAAVPCTDVK-SAVL 780 (952)
Q Consensus 702 ~efVldlL~~~k~krVLDIGCGeG~ll~~LAr~g~~~~qVVGVDISeemLe~ArkrLsa~la~~~~~l~Pr~~~~-nVtf 780 (952)
...+.+.+...++.+|||+|||+|.++..+++.. +..+|+|+|+|+.+++.|++++.. .+.. ++ +
T Consensus 14 ~~~~~~~~~~~~~~~vldiG~G~G~~~~~l~~~~-~~~~v~~vD~~~~~~~~a~~~~~~------------~~~~~~~-~ 79 (178)
T 3hm2_A 14 RALAISALAPKPHETLWDIGGGSGSIAIEWLRST-PQTTAVCFEISEERRERILSNAIN------------LGVSDRI-A 79 (178)
T ss_dssp HHHHHHHHCCCTTEEEEEESTTTTHHHHHHHTTS-SSEEEEEECSCHHHHHHHHHHHHT------------TTCTTSE-E
T ss_pred HHHHHHHhcccCCCeEEEeCCCCCHHHHHHHHHC-CCCeEEEEeCCHHHHHHHHHHHHH------------hCCCCCE-E
Confidence 3455666666677899999999999999999874 348999999999999999987652 1223 78 8
Q ss_pred EEcCccc-cCCCCCCccEEEEccccccCChhHHHHHHHHHHHccCCC-EEEEEecCC
Q 002218 781 FDGSITV-FDSRLHGFDIGTCLEVIEHMEEDEASQFGNIVLSSFRPR-ILIVSTPNY 835 (952)
Q Consensus 781 ~qGDa~d-Lpf~d~sFDVVVcieVIEHL~dD~l~~L~eeI~RvLKPG-~LIISTPN~ 835 (952)
+++|+.+ ++...+.||+|++..+++| ..+.+++.++|||| .+++.+++.
T Consensus 80 ~~~d~~~~~~~~~~~~D~i~~~~~~~~------~~~l~~~~~~L~~gG~l~~~~~~~ 130 (178)
T 3hm2_A 80 VQQGAPRAFDDVPDNPDVIFIGGGLTA------PGVFAAAWKRLPVGGRLVANAVTV 130 (178)
T ss_dssp EECCTTGGGGGCCSCCSEEEECC-TTC------TTHHHHHHHTCCTTCEEEEEECSH
T ss_pred EecchHhhhhccCCCCCEEEECCcccH------HHHHHHHHHhcCCCCEEEEEeecc
Confidence 8888854 3333378999999999988 23445799999998 888877653
No 87
>3dp7_A SAM-dependent methyltransferase; structural genomics, protein structure initiative, NEW YORK structural genomix research; 2.33A {Bacteroides vulgatus}
Probab=99.36 E-value=1.1e-11 Score=134.96 Aligned_cols=108 Identities=15% Similarity=0.143 Sum_probs=89.1
Q ss_pred CCCCEEEEEcCccchHHHHHhcCCCCCceEEEEeCChHHHHHHHHHHhhhhhcccccCCCCCCCccEEEEEcCcccc--C
Q 002218 712 SCATTLVDFGCGSGSLLDSLLDYPTALEKIVGVDISQKSLSRAAKIIHSKLSKKLDAAVPCTDVKSAVLFDGSITVF--D 789 (952)
Q Consensus 712 ~k~krVLDIGCGeG~ll~~LAr~g~~~~qVVGVDISeemLe~ArkrLsa~la~~~~~l~Pr~~~~nVtf~qGDa~dL--p 789 (952)
....+|||||||+|.++..+++.. +..+++|+|+ +.+++.|++++... ....++++..+|+.+. +
T Consensus 178 ~~~~~vlDvG~G~G~~~~~l~~~~-p~~~~~~~D~-~~~~~~a~~~~~~~-----------~~~~~v~~~~~d~~~~~~~ 244 (363)
T 3dp7_A 178 HHPKRLLDIGGNTGKWATQCVQYN-KEVEVTIVDL-PQQLEMMRKQTAGL-----------SGSERIHGHGANLLDRDVP 244 (363)
T ss_dssp GCCSEEEEESCTTCHHHHHHHHHS-TTCEEEEEEC-HHHHHHHHHHHTTC-----------TTGGGEEEEECCCCSSSCC
T ss_pred cCCCEEEEeCCCcCHHHHHHHHhC-CCCEEEEEeC-HHHHHHHHHHHHhc-----------CcccceEEEEccccccCCC
Confidence 467899999999999999998865 3479999999 99999998876421 1235799999999875 3
Q ss_pred CCCCCccEEEEccccccCChhHHHHHHHHHHHccCCC-EEEEEec
Q 002218 790 SRLHGFDIGTCLEVIEHMEEDEASQFGNIVLSSFRPR-ILIVSTP 833 (952)
Q Consensus 790 f~d~sFDVVVcieVIEHL~dD~l~~L~eeI~RvLKPG-~LIISTP 833 (952)
++ ++||+|++..++||++++....+.+++.++|||| .++|..+
T Consensus 245 ~p-~~~D~v~~~~vlh~~~~~~~~~~l~~~~~~L~pgG~l~i~e~ 288 (363)
T 3dp7_A 245 FP-TGFDAVWMSQFLDCFSEEEVISILTRVAQSIGKDSKVYIMET 288 (363)
T ss_dssp CC-CCCSEEEEESCSTTSCHHHHHHHHHHHHHHCCTTCEEEEEEC
T ss_pred CC-CCcCEEEEechhhhCCHHHHHHHHHHHHHhcCCCcEEEEEee
Confidence 44 7899999999999999777677778899999999 7777554
No 88
>3mq2_A 16S rRNA methyltransferase; methyltranferase, ribosomal, antibiotic resistance, aminoglycoside, S-adenosyl-L-methionine; HET: SAH; 1.69A {Streptomyces SP}
Probab=99.36 E-value=2.7e-12 Score=128.17 Aligned_cols=158 Identities=10% Similarity=0.093 Sum_probs=102.3
Q ss_pred HHhhcCCCCEEEEEcCccchHHHHHhcCCCCCceEEEEeCChHHHHHHHHHHhhhhhcccccCCCCCCCccEEEEEcCcc
Q 002218 707 QHIKESCATTLVDFGCGSGSLLDSLLDYPTALEKIVGVDISQKSLSRAAKIIHSKLSKKLDAAVPCTDVKSAVLFDGSIT 786 (952)
Q Consensus 707 dlL~~~k~krVLDIGCGeG~ll~~LAr~g~~~~qVVGVDISeemLe~ArkrLsa~la~~~~~l~Pr~~~~nVtf~qGDa~ 786 (952)
+.+...++.+|||||||+|.++..|++.. +..+|+|||+|+.|++.+.++...... ..+..++++.++|+.
T Consensus 21 ~~l~~~~~~~vLDiGcG~G~~~~~la~~~-p~~~v~gvD~s~~~l~~~~~~a~~~~~--------~~~~~~v~~~~~d~~ 91 (218)
T 3mq2_A 21 EQLRSQYDDVVLDVGTGDGKHPYKVARQN-PSRLVVALDADKSRMEKISAKAAAKPA--------KGGLPNLLYLWATAE 91 (218)
T ss_dssp HHHHTTSSEEEEEESCTTCHHHHHHHHHC-TTEEEEEEESCGGGGHHHHHHHTSCGG--------GTCCTTEEEEECCST
T ss_pred HHhhccCCCEEEEecCCCCHHHHHHHHHC-CCCEEEEEECCHHHHHHHHHHHHHhhh--------hcCCCceEEEecchh
Confidence 33445577899999999999999999874 348999999999999975444322111 124458999999999
Q ss_pred ccCCCCCCccEEEEcc---cc--ccCChhHHHHHHHHHHHccCCC-EEEEEecCCchhHHHHhhccCccCCCCcchhhhc
Q 002218 787 VFDSRLHGFDIGTCLE---VI--EHMEEDEASQFGNIVLSSFRPR-ILIVSTPNYEYNAILQKSSSTIQEDDPDEKTQLQ 860 (952)
Q Consensus 787 dLpf~d~sFDVVVcie---VI--EHL~dD~l~~L~eeI~RvLKPG-~LIISTPN~efN~lf~~L~~~ta~eYPde~~g~~ 860 (952)
++++.++. |.|+... .. +|+++ +. .+.+++.++|||| .++++.....+.....
T Consensus 92 ~l~~~~~~-d~v~~~~~~~~~~~~~~~~-~~-~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~------------------ 150 (218)
T 3mq2_A 92 RLPPLSGV-GELHVLMPWGSLLRGVLGS-SP-EMLRGMAAVCRPGASFLVALNLHAWRPSVP------------------ 150 (218)
T ss_dssp TCCSCCCE-EEEEEESCCHHHHHHHHTS-SS-HHHHHHHHTEEEEEEEEEEEEGGGBTTBCG------------------
T ss_pred hCCCCCCC-CEEEEEccchhhhhhhhcc-HH-HHHHHHHHHcCCCcEEEEEecccccccccc------------------
Confidence 99887666 7766322 22 26653 32 4446799999999 6666543322111000
Q ss_pred cccccCCCCccccCHHHHHHHHHHHHHHcCcEEEEEeec
Q 002218 861 SCKFRNHDHKFEWTRDQFNCWATELAARHNYSVEFSGVG 899 (952)
Q Consensus 861 ~~~fRh~DHkFEWTReEFqsWae~La~q~GYsVefsGVG 899 (952)
..+ ....+++..+..++..++.++||.+.-...-
T Consensus 151 --~~~---~~~~~~~~~~~~~l~~~l~~aGf~i~~~~~~ 184 (218)
T 3mq2_A 151 --EVG---EHPEPTPDSADEWLAPRYAEAGWKLADCRYL 184 (218)
T ss_dssp --GGT---TCCCCCHHHHHHHHHHHHHHTTEEEEEEEEE
T ss_pred --ccc---cCCccchHHHHHHHHHHHHHcCCCceeeecc
Confidence 011 1122445555555667888899998655443
No 89
>3mti_A RRNA methylase; SAM-dependent, PSI, MCSG, structural genomics, midwest cente structural genomics, protein structure initiative; 1.95A {Streptococcus thermophilus} PDB: 3lby_A*
Probab=99.35 E-value=3.8e-12 Score=123.73 Aligned_cols=104 Identities=12% Similarity=0.122 Sum_probs=78.6
Q ss_pred CCCEEEEEcCccchHHHHHhcCCCCCceEEEEeCChHHHHHHHHHHhhhhhcccccCCCCCCCccEEEEEcCccccC-CC
Q 002218 713 CATTLVDFGCGSGSLLDSLLDYPTALEKIVGVDISQKSLSRAAKIIHSKLSKKLDAAVPCTDVKSAVLFDGSITVFD-SR 791 (952)
Q Consensus 713 k~krVLDIGCGeG~ll~~LAr~g~~~~qVVGVDISeemLe~ArkrLsa~la~~~~~l~Pr~~~~nVtf~qGDa~dLp-f~ 791 (952)
++.+|||+|||+|.++..|++.+ .+|+|+|+|+.|++.|++++... +..++++.++++..++ +.
T Consensus 22 ~~~~vLDiGcG~G~~~~~la~~~---~~v~~vD~s~~~l~~a~~~~~~~------------~~~~v~~~~~~~~~l~~~~ 86 (185)
T 3mti_A 22 DESIVVDATMGNGNDTAFLAGLS---KKVYAFDVQEQALGKTSQRLSDL------------GIENTELILDGHENLDHYV 86 (185)
T ss_dssp TTCEEEESCCTTSHHHHHHHTTS---SEEEEEESCHHHHHHHHHHHHHH------------TCCCEEEEESCGGGGGGTC
T ss_pred CCCEEEEEcCCCCHHHHHHHHhC---CEEEEEECCHHHHHHHHHHHHHc------------CCCcEEEEeCcHHHHHhhc
Confidence 67899999999999999999985 89999999999999999887531 2358999998887754 34
Q ss_pred CCCccEEEEc-ccccc-------CChhHHHHHHHHHHHccCCC-EEEEEe
Q 002218 792 LHGFDIGTCL-EVIEH-------MEEDEASQFGNIVLSSFRPR-ILIVST 832 (952)
Q Consensus 792 d~sFDVVVci-eVIEH-------L~dD~l~~L~eeI~RvLKPG-~LIIST 832 (952)
++.||+|++. ..+++ .+ +....+.+++.++|||| .+++..
T Consensus 87 ~~~fD~v~~~~~~~~~~~~~~~~~~-~~~~~~l~~~~~~LkpgG~l~i~~ 135 (185)
T 3mti_A 87 REPIRAAIFNLGYLPSADKSVITKP-HTTLEAIEKILDRLEVGGRLAIMI 135 (185)
T ss_dssp CSCEEEEEEEEC-----------CH-HHHHHHHHHHHHHEEEEEEEEEEE
T ss_pred cCCcCEEEEeCCCCCCcchhcccCh-hhHHHHHHHHHHhcCCCcEEEEEE
Confidence 6789999886 33333 22 33334446799999999 666654
No 90
>3e05_A Precorrin-6Y C5,15-methyltransferase (decarboxyla; porphyrin metabolism, S-adenosyl-methionine; 1.80A {Geobacter metallireducens} SCOP: c.66.1.0
Probab=99.32 E-value=1.2e-11 Score=122.47 Aligned_cols=114 Identities=11% Similarity=0.037 Sum_probs=90.7
Q ss_pred HHHHHHhhcCCCCEEEEEcCccchHHHHHhcCCCCCceEEEEeCChHHHHHHHHHHhhhhhcccccCCCCCCCccEEEEE
Q 002218 703 EYALQHIKESCATTLVDFGCGSGSLLDSLLDYPTALEKIVGVDISQKSLSRAAKIIHSKLSKKLDAAVPCTDVKSAVLFD 782 (952)
Q Consensus 703 efVldlL~~~k~krVLDIGCGeG~ll~~LAr~g~~~~qVVGVDISeemLe~ArkrLsa~la~~~~~l~Pr~~~~nVtf~q 782 (952)
..+++.+...++.+|||+|||+|.++..+++.+ +..+|+|+|+|+.+++.|++++... +..++++.+
T Consensus 30 ~~~l~~l~~~~~~~vLDiG~G~G~~~~~la~~~-~~~~v~~vD~s~~~~~~a~~~~~~~------------~~~~v~~~~ 96 (204)
T 3e05_A 30 AVTLSKLRLQDDLVMWDIGAGSASVSIEASNLM-PNGRIFALERNPQYLGFIRDNLKKF------------VARNVTLVE 96 (204)
T ss_dssp HHHHHHTTCCTTCEEEEETCTTCHHHHHHHHHC-TTSEEEEEECCHHHHHHHHHHHHHH------------TCTTEEEEE
T ss_pred HHHHHHcCCCCCCEEEEECCCCCHHHHHHHHHC-CCCEEEEEeCCHHHHHHHHHHHHHh------------CCCcEEEEe
Confidence 456666677778999999999999999999876 4579999999999999999876531 335799999
Q ss_pred cCccccCCCCCCccEEEEccccccCChhHHHHHHHHHHHccCCC-EEEEEecC
Q 002218 783 GSITVFDSRLHGFDIGTCLEVIEHMEEDEASQFGNIVLSSFRPR-ILIVSTPN 834 (952)
Q Consensus 783 GDa~dLpf~d~sFDVVVcieVIEHL~dD~l~~L~eeI~RvLKPG-~LIISTPN 834 (952)
+|+.+.......||+|++..+++. . ..+.+++.++|||| .+++.++.
T Consensus 97 ~d~~~~~~~~~~~D~i~~~~~~~~----~-~~~l~~~~~~LkpgG~l~~~~~~ 144 (204)
T 3e05_A 97 AFAPEGLDDLPDPDRVFIGGSGGM----L-EEIIDAVDRRLKSEGVIVLNAVT 144 (204)
T ss_dssp CCTTTTCTTSCCCSEEEESCCTTC----H-HHHHHHHHHHCCTTCEEEEEECB
T ss_pred CChhhhhhcCCCCCEEEECCCCcC----H-HHHHHHHHHhcCCCeEEEEEecc
Confidence 999776555578999999887752 2 34556799999999 77776554
No 91
>1qzz_A RDMB, aclacinomycin-10-hydroxylase; anthracycline, methyltransferase, polyketide, tailoring enzymes, structural proteomics in E spine; HET: SAM; 2.10A {Streptomyces purpurascens} SCOP: a.4.5.29 c.66.1.12 PDB: 1r00_A* 1xds_A* 1xdu_A*
Probab=99.32 E-value=1e-11 Score=134.27 Aligned_cols=115 Identities=14% Similarity=0.115 Sum_probs=90.2
Q ss_pred HHHHHhhcCCCCEEEEEcCccchHHHHHhcCCCCCceEEEEeCChHHHHHHHHHHhhhhhcccccCCCCCCCccEEEEEc
Q 002218 704 YALQHIKESCATTLVDFGCGSGSLLDSLLDYPTALEKIVGVDISQKSLSRAAKIIHSKLSKKLDAAVPCTDVKSAVLFDG 783 (952)
Q Consensus 704 fVldlL~~~k~krVLDIGCGeG~ll~~LAr~g~~~~qVVGVDISeemLe~ArkrLsa~la~~~~~l~Pr~~~~nVtf~qG 783 (952)
.+.+.+...++.+|||||||+|.++..+++.. +..+++|+|+ +.+++.|++++... ....++++.++
T Consensus 173 ~~~~~~~~~~~~~vlDvG~G~G~~~~~l~~~~-~~~~~~~~D~-~~~~~~a~~~~~~~-----------~~~~~v~~~~~ 239 (374)
T 1qzz_A 173 APADAYDWSAVRHVLDVGGGNGGMLAAIALRA-PHLRGTLVEL-AGPAERARRRFADA-----------GLADRVTVAEG 239 (374)
T ss_dssp HHHHTSCCTTCCEEEEETCTTSHHHHHHHHHC-TTCEEEEEEC-HHHHHHHHHHHHHT-----------TCTTTEEEEEC
T ss_pred HHHHhCCCCCCCEEEEECCCcCHHHHHHHHHC-CCCEEEEEeC-HHHHHHHHHHHHhc-----------CCCCceEEEeC
Confidence 34444444567899999999999999999875 3479999999 99999999876431 12237999999
Q ss_pred CccccCCCCCCccEEEEccccccCChhHHHHHHHHHHHccCCC-EEEEEec
Q 002218 784 SITVFDSRLHGFDIGTCLEVIEHMEEDEASQFGNIVLSSFRPR-ILIVSTP 833 (952)
Q Consensus 784 Da~dLpf~d~sFDVVVcieVIEHL~dD~l~~L~eeI~RvLKPG-~LIISTP 833 (952)
|+.+ +.+ ..||+|++..++||++++....+.+++.++|+|| .++|..+
T Consensus 240 d~~~-~~~-~~~D~v~~~~vl~~~~~~~~~~~l~~~~~~L~pgG~l~i~e~ 288 (374)
T 1qzz_A 240 DFFK-PLP-VTADVVLLSFVLLNWSDEDALTILRGCVRALEPGGRLLVLDR 288 (374)
T ss_dssp CTTS-CCS-CCEEEEEEESCGGGSCHHHHHHHHHHHHHHEEEEEEEEEEEC
T ss_pred CCCC-cCC-CCCCEEEEeccccCCCHHHHHHHHHHHHHhcCCCcEEEEEec
Confidence 9976 222 2499999999999999766566777899999999 6776655
No 92
>2qe6_A Uncharacterized protein TFU_2867; putative methyltransferase, structural genomics, joint cente structural genomics, JCSG; HET: NEP SAM; 1.95A {Thermobifida fusca}
Probab=99.32 E-value=1.4e-11 Score=130.13 Aligned_cols=110 Identities=11% Similarity=0.145 Sum_probs=87.2
Q ss_pred CCCCEEEEEcCcc---chHHHHHhcCCCCCceEEEEeCChHHHHHHHHHHhhhhhcccccCCCCCCCccEEEEEcCcccc
Q 002218 712 SCATTLVDFGCGS---GSLLDSLLDYPTALEKIVGVDISQKSLSRAAKIIHSKLSKKLDAAVPCTDVKSAVLFDGSITVF 788 (952)
Q Consensus 712 ~k~krVLDIGCGe---G~ll~~LAr~g~~~~qVVGVDISeemLe~ArkrLsa~la~~~~~l~Pr~~~~nVtf~qGDa~dL 788 (952)
....+|||||||+ |.++..+++.. +..+|+|||+|+.||+.|++++. ...+++++++|+.+.
T Consensus 76 ~~~~~vLDlGcG~pt~G~~~~~~~~~~-p~~~v~~vD~sp~~l~~Ar~~~~--------------~~~~v~~~~~D~~~~ 140 (274)
T 2qe6_A 76 AGISQFLDLGSGLPTVQNTHEVAQSVN-PDARVVYVDIDPMVLTHGRALLA--------------KDPNTAVFTADVRDP 140 (274)
T ss_dssp TCCCEEEEETCCSCCSSCHHHHHHHHC-TTCEEEEEESSHHHHHHHHHHHT--------------TCTTEEEEECCTTCH
T ss_pred cCCCEEEEECCCCCCCChHHHHHHHhC-CCCEEEEEECChHHHHHHHHhcC--------------CCCCeEEEEeeCCCc
Confidence 3457999999999 99887666543 23799999999999999988753 124799999999763
Q ss_pred C-----------CCCCCccEEEEccccccCChhHHHHHHHHHHHccCCC-EEEEEecCCc
Q 002218 789 D-----------SRLHGFDIGTCLEVIEHMEEDEASQFGNIVLSSFRPR-ILIVSTPNYE 836 (952)
Q Consensus 789 p-----------f~d~sFDVVVcieVIEHL~dD~l~~L~eeI~RvLKPG-~LIISTPN~e 836 (952)
+ +....||+|++..++||++++....+.+++.++|+|| .++++....+
T Consensus 141 ~~~~~~~~~~~~~d~~~~d~v~~~~vlh~~~d~~~~~~l~~~~~~L~pGG~l~i~~~~~~ 200 (274)
T 2qe6_A 141 EYILNHPDVRRMIDFSRPAAIMLVGMLHYLSPDVVDRVVGAYRDALAPGSYLFMTSLVDT 200 (274)
T ss_dssp HHHHHSHHHHHHCCTTSCCEEEETTTGGGSCTTTHHHHHHHHHHHSCTTCEEEEEEEBCS
T ss_pred hhhhccchhhccCCCCCCEEEEEechhhhCCcHHHHHHHHHHHHhCCCCcEEEEEEecCc
Confidence 2 2235899999999999999754556667899999999 8888877654
No 93
>1vbf_A 231AA long hypothetical protein-L-isoaspartate O- methyltransferase; trimeric coiled coil assembly; 2.80A {Sulfolobus tokodaii} SCOP: c.66.1.7
Probab=99.32 E-value=9.4e-12 Score=125.09 Aligned_cols=110 Identities=15% Similarity=0.182 Sum_probs=90.6
Q ss_pred HHHHHHHhhcCCCCEEEEEcCccchHHHHHhcCCCCCceEEEEeCChHHHHHHHHHHhhhhhcccccCCCCCCCccEEEE
Q 002218 702 VEYALQHIKESCATTLVDFGCGSGSLLDSLLDYPTALEKIVGVDISQKSLSRAAKIIHSKLSKKLDAAVPCTDVKSAVLF 781 (952)
Q Consensus 702 ~efVldlL~~~k~krVLDIGCGeG~ll~~LAr~g~~~~qVVGVDISeemLe~ArkrLsa~la~~~~~l~Pr~~~~nVtf~ 781 (952)
...+.+.+...++.+|||||||+|.++..+++.+ .+|+|+|+++.+++.|++++.. .+ ++++.
T Consensus 59 ~~~~~~~~~~~~~~~vLdiG~G~G~~~~~l~~~~---~~v~~vD~~~~~~~~a~~~~~~------------~~--~v~~~ 121 (231)
T 1vbf_A 59 GIFMLDELDLHKGQKVLEIGTGIGYYTALIAEIV---DKVVSVEINEKMYNYASKLLSY------------YN--NIKLI 121 (231)
T ss_dssp HHHHHHHTTCCTTCEEEEECCTTSHHHHHHHHHS---SEEEEEESCHHHHHHHHHHHTT------------CS--SEEEE
T ss_pred HHHHHHhcCCCCCCEEEEEcCCCCHHHHHHHHHc---CEEEEEeCCHHHHHHHHHHHhh------------cC--CeEEE
Confidence 4456666666678899999999999999999887 7999999999999999887531 11 79999
Q ss_pred EcCccccCCCCCCccEEEEccccccCChhHHHHHHHHHHHccCCC-EEEEEecCCc
Q 002218 782 DGSITVFDSRLHGFDIGTCLEVIEHMEEDEASQFGNIVLSSFRPR-ILIVSTPNYE 836 (952)
Q Consensus 782 qGDa~dLpf~d~sFDVVVcieVIEHL~dD~l~~L~eeI~RvLKPG-~LIISTPN~e 836 (952)
++|+.+.....++||+|++..+++|+. +++.++|+|| .+++.+++..
T Consensus 122 ~~d~~~~~~~~~~fD~v~~~~~~~~~~--------~~~~~~L~pgG~l~~~~~~~~ 169 (231)
T 1vbf_A 122 LGDGTLGYEEEKPYDRVVVWATAPTLL--------CKPYEQLKEGGIMILPIGVGR 169 (231)
T ss_dssp ESCGGGCCGGGCCEEEEEESSBBSSCC--------HHHHHTEEEEEEEEEEECSSS
T ss_pred ECCcccccccCCCccEEEECCcHHHHH--------HHHHHHcCCCcEEEEEEcCCC
Confidence 999987433467899999999999998 2488899999 7778877654
No 94
>1zx0_A Guanidinoacetate N-methyltransferase; structural genomics, structural genomics consortium; HET: SAH; 1.86A {Homo sapiens} PDB: 3orh_A* 1xcj_A* 1xcl_A* 1p1c_A* 1p1b_A* 1khh_A*
Probab=99.31 E-value=5.5e-12 Score=128.15 Aligned_cols=106 Identities=11% Similarity=0.108 Sum_probs=82.7
Q ss_pred CCCCEEEEEcCccchHHHHHhcCCCCCceEEEEeCChHHHHHHHHHHhhhhhcccccCCCCCCCccEEEEEcCcccc--C
Q 002218 712 SCATTLVDFGCGSGSLLDSLLDYPTALEKIVGVDISQKSLSRAAKIIHSKLSKKLDAAVPCTDVKSAVLFDGSITVF--D 789 (952)
Q Consensus 712 ~k~krVLDIGCGeG~ll~~LAr~g~~~~qVVGVDISeemLe~ArkrLsa~la~~~~~l~Pr~~~~nVtf~qGDa~dL--p 789 (952)
.++.+|||||||+|.++..+++.+. .+|+|+|+|+.|++.|+++... ...+++++++|+.++ +
T Consensus 59 ~~~~~vLDiGcGtG~~~~~l~~~~~--~~v~gvD~s~~~l~~a~~~~~~-------------~~~~v~~~~~d~~~~~~~ 123 (236)
T 1zx0_A 59 SKGGRVLEVGFGMAIAASKVQEAPI--DEHWIIECNDGVFQRLRDWAPR-------------QTHKVIPLKGLWEDVAPT 123 (236)
T ss_dssp TTCEEEEEECCTTSHHHHHHHTSCE--EEEEEEECCHHHHHHHHHHGGG-------------CSSEEEEEESCHHHHGGG
T ss_pred CCCCeEEEEeccCCHHHHHHHhcCC--CeEEEEcCCHHHHHHHHHHHHh-------------cCCCeEEEecCHHHhhcc
Confidence 4678999999999999999988662 5899999999999999886531 124799999999988 7
Q ss_pred CCCCCccEEEE-cccc--ccCChhHHHHHHHHHHHccCCC-EEEEEe
Q 002218 790 SRLHGFDIGTC-LEVI--EHMEEDEASQFGNIVLSSFRPR-ILIVST 832 (952)
Q Consensus 790 f~d~sFDVVVc-ieVI--EHL~dD~l~~L~eeI~RvLKPG-~LIIST 832 (952)
+.+++||+|++ ...+ ++........+.+++.++|||| .+++..
T Consensus 124 ~~~~~fD~V~~d~~~~~~~~~~~~~~~~~l~~~~r~LkpgG~l~~~~ 170 (236)
T 1zx0_A 124 LPDGHFDGILYDTYPLSEETWHTHQFNFIKNHAFRLLKPGGVLTYCN 170 (236)
T ss_dssp SCTTCEEEEEECCCCCBGGGTTTHHHHHHHHTHHHHEEEEEEEEECC
T ss_pred cCCCceEEEEECCcccchhhhhhhhHHHHHHHHHHhcCCCeEEEEEe
Confidence 88889999999 5543 2222333445567899999999 555543
No 95
>1x19_A CRTF-related protein; methyltransferase, bacteriochllochlorophyll, BCHU, SAM, SAH, adenosylmethyonine, S-adenosylhomocysteine, ADO-Met; 2.27A {Chlorobium tepidum} PDB: 1x1a_A* 1x1b_A* 1x1c_A* 1x1d_A*
Probab=99.31 E-value=5e-11 Score=128.99 Aligned_cols=115 Identities=11% Similarity=0.060 Sum_probs=91.7
Q ss_pred HHHHHhhcCCCCEEEEEcCccchHHHHHhcCCCCCceEEEEeCChHHHHHHHHHHhhhhhcccccCCCCCCCccEEEEEc
Q 002218 704 YALQHIKESCATTLVDFGCGSGSLLDSLLDYPTALEKIVGVDISQKSLSRAAKIIHSKLSKKLDAAVPCTDVKSAVLFDG 783 (952)
Q Consensus 704 fVldlL~~~k~krVLDIGCGeG~ll~~LAr~g~~~~qVVGVDISeemLe~ArkrLsa~la~~~~~l~Pr~~~~nVtf~qG 783 (952)
.+.+.+...+..+|||||||+|.++..+++.. +..+++|+|+ +.+++.|++++... ....++++..+
T Consensus 181 ~l~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~-p~~~~~~~D~-~~~~~~a~~~~~~~-----------~~~~~v~~~~~ 247 (359)
T 1x19_A 181 LLLEEAKLDGVKKMIDVGGGIGDISAAMLKHF-PELDSTILNL-PGAIDLVNENAAEK-----------GVADRMRGIAV 247 (359)
T ss_dssp HHHHHCCCTTCCEEEEESCTTCHHHHHHHHHC-TTCEEEEEEC-GGGHHHHHHHHHHT-----------TCTTTEEEEEC
T ss_pred HHHHhcCCCCCCEEEEECCcccHHHHHHHHHC-CCCeEEEEec-HHHHHHHHHHHHhc-----------CCCCCEEEEeC
Confidence 44455555567899999999999999999875 3479999999 99999999876531 12235999999
Q ss_pred CccccCCCCCCccEEEEccccccCChhHHHHHHHHHHHccCCC-EEEEEec
Q 002218 784 SITVFDSRLHGFDIGTCLEVIEHMEEDEASQFGNIVLSSFRPR-ILIVSTP 833 (952)
Q Consensus 784 Da~dLpf~d~sFDVVVcieVIEHL~dD~l~~L~eeI~RvLKPG-~LIISTP 833 (952)
|+.+.+++. +|+|++..++||++++....+.+++.++|||| .++|..+
T Consensus 248 d~~~~~~~~--~D~v~~~~vlh~~~d~~~~~~l~~~~~~L~pgG~l~i~e~ 296 (359)
T 1x19_A 248 DIYKESYPE--ADAVLFCRILYSANEQLSTIMCKKAFDAMRSGGRLLILDM 296 (359)
T ss_dssp CTTTSCCCC--CSEEEEESCGGGSCHHHHHHHHHHHHTTCCTTCEEEEEEE
T ss_pred ccccCCCCC--CCEEEEechhccCCHHHHHHHHHHHHHhcCCCCEEEEEec
Confidence 998876543 49999999999999766677778899999998 6666553
No 96
>2yxe_A Protein-L-isoaspartate O-methyltransferase; rossman-type fold, alpha/beta/alpha sandwich structure, STRU genomics, NPPSFA; 2.00A {Methanocaldococcus jannaschii}
Probab=99.31 E-value=8.6e-12 Score=124.03 Aligned_cols=115 Identities=10% Similarity=0.115 Sum_probs=91.7
Q ss_pred HHHHHHHhhcCCCCEEEEEcCccchHHHHHhcCCCCCceEEEEeCChHHHHHHHHHHhhhhhcccccCCCCCCCccEEEE
Q 002218 702 VEYALQHIKESCATTLVDFGCGSGSLLDSLLDYPTALEKIVGVDISQKSLSRAAKIIHSKLSKKLDAAVPCTDVKSAVLF 781 (952)
Q Consensus 702 ~efVldlL~~~k~krVLDIGCGeG~ll~~LAr~g~~~~qVVGVDISeemLe~ArkrLsa~la~~~~~l~Pr~~~~nVtf~ 781 (952)
...+.+.+...++.+|||||||+|.++..+++.+++..+|+|+|+++.+++.|++++... +..++++.
T Consensus 66 ~~~~~~~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~------------~~~~v~~~ 133 (215)
T 2yxe_A 66 VGMMCELLDLKPGMKVLEIGTGCGYHAAVTAEIVGEDGLVVSIERIPELAEKAERTLRKL------------GYDNVIVI 133 (215)
T ss_dssp HHHHHHHTTCCTTCEEEEECCTTSHHHHHHHHHHCTTSEEEEEESCHHHHHHHHHHHHHH------------TCTTEEEE
T ss_pred HHHHHHhhCCCCCCEEEEECCCccHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHc------------CCCCeEEE
Confidence 345666666667889999999999999999886533469999999999999998876431 23469999
Q ss_pred EcCccccCCCCCCccEEEEccccccCChhHHHHHHHHHHHccCCC-EEEEEecCCc
Q 002218 782 DGSITVFDSRLHGFDIGTCLEVIEHMEEDEASQFGNIVLSSFRPR-ILIVSTPNYE 836 (952)
Q Consensus 782 qGDa~dLpf~d~sFDVVVcieVIEHL~dD~l~~L~eeI~RvLKPG-~LIISTPN~e 836 (952)
++|+.........||+|++..+++|++ +++.++|||| .+++.+++..
T Consensus 134 ~~d~~~~~~~~~~fD~v~~~~~~~~~~--------~~~~~~L~pgG~lv~~~~~~~ 181 (215)
T 2yxe_A 134 VGDGTLGYEPLAPYDRIYTTAAGPKIP--------EPLIRQLKDGGKLLMPVGRYL 181 (215)
T ss_dssp ESCGGGCCGGGCCEEEEEESSBBSSCC--------HHHHHTEEEEEEEEEEESSSS
T ss_pred ECCcccCCCCCCCeeEEEECCchHHHH--------HHHHHHcCCCcEEEEEECCCC
Confidence 999865433367899999999999998 2588999998 7788877653
No 97
>3i53_A O-methyltransferase; CO-complex, rossmann-like fold; HET: SAH; 2.08A {Streptomyces carzinostaticus subsp} PDB: 3i58_A* 3i5u_A* 3i64_A*
Probab=99.31 E-value=1.8e-11 Score=130.86 Aligned_cols=144 Identities=18% Similarity=0.072 Sum_probs=104.4
Q ss_pred CCCEEEEEcCccchHHHHHhcCCCCCceEEEEeCChHHHHHHHHHHhhhhhcccccCCCCCCCccEEEEEcCccccCCCC
Q 002218 713 CATTLVDFGCGSGSLLDSLLDYPTALEKIVGVDISQKSLSRAAKIIHSKLSKKLDAAVPCTDVKSAVLFDGSITVFDSRL 792 (952)
Q Consensus 713 k~krVLDIGCGeG~ll~~LAr~g~~~~qVVGVDISeemLe~ArkrLsa~la~~~~~l~Pr~~~~nVtf~qGDa~dLpf~d 792 (952)
+..+|||||||+|.++..+++.. +..+++++|+ +.+++.|++++... ....++++..+|+.+ +.+.
T Consensus 169 ~~~~vlDvG~G~G~~~~~l~~~~-p~~~~~~~D~-~~~~~~a~~~~~~~-----------~~~~~v~~~~~d~~~-~~p~ 234 (332)
T 3i53_A 169 ALGHVVDVGGGSGGLLSALLTAH-EDLSGTVLDL-QGPASAAHRRFLDT-----------GLSGRAQVVVGSFFD-PLPA 234 (332)
T ss_dssp GGSEEEEETCTTSHHHHHHHHHC-TTCEEEEEEC-HHHHHHHHHHHHHT-----------TCTTTEEEEECCTTS-CCCC
T ss_pred CCCEEEEeCCChhHHHHHHHHHC-CCCeEEEecC-HHHHHHHHHhhhhc-----------CcCcCeEEecCCCCC-CCCC
Confidence 45799999999999999998865 3478999999 99999998876531 123579999999973 3333
Q ss_pred CCccEEEEccccccCChhHHHHHHHHHHHccCCC-EEEEEecCCchh---HHHHhhccCccCCCCcchhhhccccccCCC
Q 002218 793 HGFDIGTCLEVIEHMEEDEASQFGNIVLSSFRPR-ILIVSTPNYEYN---AILQKSSSTIQEDDPDEKTQLQSCKFRNHD 868 (952)
Q Consensus 793 ~sFDVVVcieVIEHL~dD~l~~L~eeI~RvLKPG-~LIISTPN~efN---~lf~~L~~~ta~eYPde~~g~~~~~fRh~D 868 (952)
+||+|++..++||++++....+.+++.++|+|| .++|..+..... ..+... . .. ..
T Consensus 235 -~~D~v~~~~vlh~~~~~~~~~~l~~~~~~L~pgG~l~i~e~~~~~~~~~~~~d~~----------------~--~~-~~ 294 (332)
T 3i53_A 235 -GAGGYVLSAVLHDWDDLSAVAILRRCAEAAGSGGVVLVIEAVAGDEHAGTGMDLR----------------M--LT-YF 294 (332)
T ss_dssp -SCSEEEEESCGGGSCHHHHHHHHHHHHHHHTTTCEEEEEECCCC---CCHHHHHH----------------H--HH-HH
T ss_pred -CCcEEEEehhhccCCHHHHHHHHHHHHHhcCCCCEEEEEeecCCCCCccHHHHHH----------------H--Hh-hC
Confidence 899999999999999776677778899999999 777765543211 011100 0 00 01
Q ss_pred CccccCHHHHHHHHHHHHHHcCcEEE
Q 002218 869 HKFEWTRDQFNCWATELAARHNYSVE 894 (952)
Q Consensus 869 HkFEWTReEFqsWae~La~q~GYsVe 894 (952)
+..++|.+++.+ ++++.||.+.
T Consensus 295 ~~~~~t~~e~~~----ll~~aGf~~~ 316 (332)
T 3i53_A 295 GGKERSLAELGE----LAAQAGLAVR 316 (332)
T ss_dssp SCCCCCHHHHHH----HHHHTTEEEE
T ss_pred CCCCCCHHHHHH----HHHHCCCEEE
Confidence 234578888884 5678899874
No 98
>3njr_A Precorrin-6Y methylase; methyltransferase, decarboxylase, transferase; HET: SAH PG4; 2.70A {Rhodobacter capsulatus}
Probab=99.30 E-value=2.2e-11 Score=122.62 Aligned_cols=110 Identities=12% Similarity=0.064 Sum_probs=88.0
Q ss_pred HHHHHHhhcCCCCEEEEEcCccchHHHHHhcCCCCCceEEEEeCChHHHHHHHHHHhhhhhcccccCCCCCCCc-cEEEE
Q 002218 703 EYALQHIKESCATTLVDFGCGSGSLLDSLLDYPTALEKIVGVDISQKSLSRAAKIIHSKLSKKLDAAVPCTDVK-SAVLF 781 (952)
Q Consensus 703 efVldlL~~~k~krVLDIGCGeG~ll~~LAr~g~~~~qVVGVDISeemLe~ArkrLsa~la~~~~~l~Pr~~~~-nVtf~ 781 (952)
..+.+.+...++.+|||+|||+|.++..+++.+ .+|+|+|+++++++.|++++.. .+.. +++++
T Consensus 45 ~~~l~~l~~~~~~~vLDlGcG~G~~~~~la~~~---~~v~~vD~s~~~~~~a~~~~~~------------~g~~~~v~~~ 109 (204)
T 3njr_A 45 ALTLAALAPRRGELLWDIGGGSGSVSVEWCLAG---GRAITIEPRADRIENIQKNIDT------------YGLSPRMRAV 109 (204)
T ss_dssp HHHHHHHCCCTTCEEEEETCTTCHHHHHHHHTT---CEEEEEESCHHHHHHHHHHHHH------------TTCTTTEEEE
T ss_pred HHHHHhcCCCCCCEEEEecCCCCHHHHHHHHcC---CEEEEEeCCHHHHHHHHHHHHH------------cCCCCCEEEE
Confidence 345666666778899999999999999999885 7999999999999999987643 2334 79999
Q ss_pred EcCccccCCCCCCccEEEEccccccCChhHHHHHHHHHHHccCCC-EEEEEecC
Q 002218 782 DGSITVFDSRLHGFDIGTCLEVIEHMEEDEASQFGNIVLSSFRPR-ILIVSTPN 834 (952)
Q Consensus 782 qGDa~dLpf~d~sFDVVVcieVIEHL~dD~l~~L~eeI~RvLKPG-~LIISTPN 834 (952)
++|+.+.......||+|++...+ +. . +.+++.++|||| .+++.+++
T Consensus 110 ~~d~~~~~~~~~~~D~v~~~~~~-----~~-~-~l~~~~~~LkpgG~lv~~~~~ 156 (204)
T 3njr_A 110 QGTAPAALADLPLPEAVFIGGGG-----SQ-A-LYDRLWEWLAPGTRIVANAVT 156 (204)
T ss_dssp ESCTTGGGTTSCCCSEEEECSCC-----CH-H-HHHHHHHHSCTTCEEEEEECS
T ss_pred eCchhhhcccCCCCCEEEECCcc-----cH-H-HHHHHHHhcCCCcEEEEEecC
Confidence 99998844445689999987644 22 2 556799999999 88887765
No 99
>1l3i_A Precorrin-6Y methyltransferase/putative decarboxylase; structural genomics, beta barrel, rossmann fold, tetramer; HET: SAH; 1.95A {Methanothermobacterthermautotrophicus} SCOP: c.66.1.22 PDB: 1kxz_A 1l3b_A 1f38_A 1l3c_A*
Probab=99.30 E-value=8.6e-12 Score=119.71 Aligned_cols=120 Identities=15% Similarity=0.221 Sum_probs=92.9
Q ss_pred hhHHHHHHHHHHHhhcCCCCEEEEEcCccchHHHHHhcCCCCCceEEEEeCChHHHHHHHHHHhhhhhcccccCCCCCCC
Q 002218 696 PLSKQRVEYALQHIKESCATTLVDFGCGSGSLLDSLLDYPTALEKIVGVDISQKSLSRAAKIIHSKLSKKLDAAVPCTDV 775 (952)
Q Consensus 696 PL~~QR~efVldlL~~~k~krVLDIGCGeG~ll~~LAr~g~~~~qVVGVDISeemLe~ArkrLsa~la~~~~~l~Pr~~~ 775 (952)
+........+.+.+...++.+|||+|||+|.++..+++.+ .+|+|+|+++.+++.|++++... ...
T Consensus 16 ~~~~~~~~~~~~~~~~~~~~~vldiG~G~G~~~~~l~~~~---~~v~~~D~~~~~~~~a~~~~~~~-----------~~~ 81 (192)
T 1l3i_A 16 PTAMEVRCLIMCLAEPGKNDVAVDVGCGTGGVTLELAGRV---RRVYAIDRNPEAISTTEMNLQRH-----------GLG 81 (192)
T ss_dssp CCCHHHHHHHHHHHCCCTTCEEEEESCTTSHHHHHHHTTS---SEEEEEESCHHHHHHHHHHHHHT-----------TCC
T ss_pred CChHHHHHHHHHhcCCCCCCEEEEECCCCCHHHHHHHHhc---CEEEEEECCHHHHHHHHHHHHHc-----------CCC
Confidence 3344455566777777788999999999999999999887 79999999999999998876431 111
Q ss_pred ccEEEEEcCccccCCCCCCccEEEEccccccCChhHHHHHHHHHHHccCCC-EEEEEecC
Q 002218 776 KSAVLFDGSITVFDSRLHGFDIGTCLEVIEHMEEDEASQFGNIVLSSFRPR-ILIVSTPN 834 (952)
Q Consensus 776 ~nVtf~qGDa~dLpf~d~sFDVVVcieVIEHL~dD~l~~L~eeI~RvLKPG-~LIISTPN 834 (952)
.++++.++|+.+.......||+|++..+++|+. .+.+.+.++|+|| .+++.+++
T Consensus 82 ~~~~~~~~d~~~~~~~~~~~D~v~~~~~~~~~~-----~~l~~~~~~l~~gG~l~~~~~~ 136 (192)
T 1l3i_A 82 DNVTLMEGDAPEALCKIPDIDIAVVGGSGGELQ-----EILRIIKDKLKPGGRIIVTAIL 136 (192)
T ss_dssp TTEEEEESCHHHHHTTSCCEEEEEESCCTTCHH-----HHHHHHHHTEEEEEEEEEEECB
T ss_pred cceEEEecCHHHhcccCCCCCEEEECCchHHHH-----HHHHHHHHhcCCCcEEEEEecC
Confidence 479999999877222225899999998887653 4456799999999 77777665
No 100
>3gwz_A MMCR; methyltransferase, mitomycin, S-adenosyl methionine, transferase; HET: MSE SAH; 1.91A {Streptomyces lavendulae} PDB: 3gxo_A*
Probab=99.29 E-value=5.5e-11 Score=129.87 Aligned_cols=114 Identities=18% Similarity=0.212 Sum_probs=90.7
Q ss_pred HHHHhhcCCCCEEEEEcCccchHHHHHhcCCCCCceEEEEeCChHHHHHHHHHHhhhhhcccccCCCCCCCccEEEEEcC
Q 002218 705 ALQHIKESCATTLVDFGCGSGSLLDSLLDYPTALEKIVGVDISQKSLSRAAKIIHSKLSKKLDAAVPCTDVKSAVLFDGS 784 (952)
Q Consensus 705 VldlL~~~k~krVLDIGCGeG~ll~~LAr~g~~~~qVVGVDISeemLe~ArkrLsa~la~~~~~l~Pr~~~~nVtf~qGD 784 (952)
+.+.+...+..+|||||||+|.++..+++.. +..+++++|+ +.+++.|++++... ....+|++..+|
T Consensus 194 l~~~~~~~~~~~vlDvG~G~G~~~~~l~~~~-p~~~~~~~D~-~~~~~~a~~~~~~~-----------~l~~~v~~~~~d 260 (369)
T 3gwz_A 194 VAAAYDFSGAATAVDIGGGRGSLMAAVLDAF-PGLRGTLLER-PPVAEEARELLTGR-----------GLADRCEILPGD 260 (369)
T ss_dssp HHHHSCCTTCSEEEEETCTTSHHHHHHHHHC-TTCEEEEEEC-HHHHHHHHHHHHHT-----------TCTTTEEEEECC
T ss_pred HHHhCCCccCcEEEEeCCCccHHHHHHHHHC-CCCeEEEEcC-HHHHHHHHHhhhhc-----------CcCCceEEeccC
Confidence 4444444567899999999999999999875 3479999999 99999998876431 123579999999
Q ss_pred ccccCCCCCCccEEEEccccccCChhHHHHHHHHHHHccCCC-EEEEEec
Q 002218 785 ITVFDSRLHGFDIGTCLEVIEHMEEDEASQFGNIVLSSFRPR-ILIVSTP 833 (952)
Q Consensus 785 a~dLpf~d~sFDVVVcieVIEHL~dD~l~~L~eeI~RvLKPG-~LIISTP 833 (952)
+.+ +.+. +||+|++..++||++++....+.+++.+.|+|| .++|..+
T Consensus 261 ~~~-~~p~-~~D~v~~~~vlh~~~d~~~~~~L~~~~~~L~pgG~l~i~e~ 308 (369)
T 3gwz_A 261 FFE-TIPD-GADVYLIKHVLHDWDDDDVVRILRRIATAMKPDSRLLVIDN 308 (369)
T ss_dssp TTT-CCCS-SCSEEEEESCGGGSCHHHHHHHHHHHHTTCCTTCEEEEEEE
T ss_pred CCC-CCCC-CceEEEhhhhhccCCHHHHHHHHHHHHHHcCCCCEEEEEEe
Confidence 983 3333 899999999999999777667777899999998 7766544
No 101
>1tw3_A COMT, carminomycin 4-O-methyltransferase; anthracycline, methylate, tailoring enzyme, polyketide, S-adenosyl-L-homocystein; HET: SAH ERT; 2.35A {Streptomyces peucetius} SCOP: a.4.5.29 c.66.1.12 PDB: 1tw2_A*
Probab=99.28 E-value=2e-11 Score=131.41 Aligned_cols=116 Identities=9% Similarity=0.102 Sum_probs=90.8
Q ss_pred HHHHHhhcCCCCEEEEEcCccchHHHHHhcCCCCCceEEEEeCChHHHHHHHHHHhhhhhcccccCCCCCCCccEEEEEc
Q 002218 704 YALQHIKESCATTLVDFGCGSGSLLDSLLDYPTALEKIVGVDISQKSLSRAAKIIHSKLSKKLDAAVPCTDVKSAVLFDG 783 (952)
Q Consensus 704 fVldlL~~~k~krVLDIGCGeG~ll~~LAr~g~~~~qVVGVDISeemLe~ArkrLsa~la~~~~~l~Pr~~~~nVtf~qG 783 (952)
.+.+.+...+..+|||||||+|.++..+++.. +..+++++|+ +.+++.|++++... ....++++..+
T Consensus 174 ~l~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~-~~~~~~~~D~-~~~~~~a~~~~~~~-----------~~~~~v~~~~~ 240 (360)
T 1tw3_A 174 APAAAYDWTNVRHVLDVGGGKGGFAAAIARRA-PHVSATVLEM-AGTVDTARSYLKDE-----------GLSDRVDVVEG 240 (360)
T ss_dssp HHHHHSCCTTCSEEEEETCTTSHHHHHHHHHC-TTCEEEEEEC-TTHHHHHHHHHHHT-----------TCTTTEEEEEC
T ss_pred HHHHhCCCccCcEEEEeCCcCcHHHHHHHHhC-CCCEEEEecC-HHHHHHHHHHHHhc-----------CCCCceEEEeC
Confidence 34445555567899999999999999999876 3478999999 99999998876431 12237999999
Q ss_pred CccccCCCCCCccEEEEccccccCChhHHHHHHHHHHHccCCC-EEEEEecC
Q 002218 784 SITVFDSRLHGFDIGTCLEVIEHMEEDEASQFGNIVLSSFRPR-ILIVSTPN 834 (952)
Q Consensus 784 Da~dLpf~d~sFDVVVcieVIEHL~dD~l~~L~eeI~RvLKPG-~LIISTPN 834 (952)
|+.+ +.+ ..||+|++..++||++++....+.+++.++|+|| .+++..+.
T Consensus 241 d~~~-~~~-~~~D~v~~~~vl~~~~~~~~~~~l~~~~~~L~pgG~l~i~e~~ 290 (360)
T 1tw3_A 241 DFFE-PLP-RKADAIILSFVLLNWPDHDAVRILTRCAEALEPGGRILIHERD 290 (360)
T ss_dssp CTTS-CCS-SCEEEEEEESCGGGSCHHHHHHHHHHHHHTEEEEEEEEEEECC
T ss_pred CCCC-CCC-CCccEEEEcccccCCCHHHHHHHHHHHHHhcCCCcEEEEEEEe
Confidence 9976 222 2499999999999999776566677899999998 67776554
No 102
>2yxd_A Probable cobalt-precorrin-6Y C(15)-methyltransfer [decarboxylating]; alpha and beta protein (A/B) class; HET: MES; 2.30A {Methanocaldococcus jannaschii}
Probab=99.28 E-value=1.9e-11 Score=116.66 Aligned_cols=115 Identities=11% Similarity=0.139 Sum_probs=89.1
Q ss_pred hhHHHHHHHHHHHhhcCCCCEEEEEcCccchHHHHHhcCCCCCceEEEEeCChHHHHHHHHHHhhhhhcccccCCCCCCC
Q 002218 696 PLSKQRVEYALQHIKESCATTLVDFGCGSGSLLDSLLDYPTALEKIVGVDISQKSLSRAAKIIHSKLSKKLDAAVPCTDV 775 (952)
Q Consensus 696 PL~~QR~efVldlL~~~k~krVLDIGCGeG~ll~~LAr~g~~~~qVVGVDISeemLe~ArkrLsa~la~~~~~l~Pr~~~ 775 (952)
+......+.+.+.+...++.+|||+|||+|.++..+++.+ .+|+|+|+++.+++.|++++.. .+.
T Consensus 18 ~~~~~~~~~~~~~~~~~~~~~vLdiG~G~G~~~~~l~~~~---~~v~~vD~~~~~~~~a~~~~~~------------~~~ 82 (183)
T 2yxd_A 18 ITKEEIRAVSIGKLNLNKDDVVVDVGCGSGGMTVEIAKRC---KFVYAIDYLDGAIEVTKQNLAK------------FNI 82 (183)
T ss_dssp CCCHHHHHHHHHHHCCCTTCEEEEESCCCSHHHHHHHTTS---SEEEEEECSHHHHHHHHHHHHH------------TTC
T ss_pred cCHHHHHHHHHHHcCCCCCCEEEEeCCCCCHHHHHHHhcC---CeEEEEeCCHHHHHHHHHHHHH------------cCC
Confidence 3444555667777776778899999999999999999844 8999999999999999987652 133
Q ss_pred ccEEEEEcCccccCCCCCCccEEEEccccccCChhHHHHHHHHHHHccCCC-EEEEEecC
Q 002218 776 KSAVLFDGSITVFDSRLHGFDIGTCLEVIEHMEEDEASQFGNIVLSSFRPR-ILIVSTPN 834 (952)
Q Consensus 776 ~nVtf~qGDa~dLpf~d~sFDVVVcieVIEHL~dD~l~~L~eeI~RvLKPG-~LIISTPN 834 (952)
.++++.++|+.+ +++.+.||+|++..+ + +. ..+.+.+.++ || .+++.+++
T Consensus 83 ~~~~~~~~d~~~-~~~~~~~D~i~~~~~-~----~~-~~~l~~~~~~--~gG~l~~~~~~ 133 (183)
T 2yxd_A 83 KNCQIIKGRAED-VLDKLEFNKAFIGGT-K----NI-EKIIEILDKK--KINHIVANTIV 133 (183)
T ss_dssp CSEEEEESCHHH-HGGGCCCSEEEECSC-S----CH-HHHHHHHHHT--TCCEEEEEESC
T ss_pred CcEEEEECCccc-cccCCCCcEEEECCc-c----cH-HHHHHHHhhC--CCCEEEEEecc
Confidence 579999999987 555578999999988 2 22 2444567777 76 88888765
No 103
>1yzh_A TRNA (guanine-N(7)-)-methyltransferase; alpha-beta-alpha sandwich, S-adenosylmeth dependent, structural genomics, PSI; 2.02A {Streptococcus pneumoniae} SCOP: c.66.1.53
Probab=99.26 E-value=2.4e-11 Score=121.66 Aligned_cols=112 Identities=14% Similarity=0.045 Sum_probs=87.3
Q ss_pred CCCEEEEEcCccchHHHHHhcCCCCCceEEEEeCChHHHHHHHHHHhhhhhcccccCCCCCCCccEEEEEcCccccC--C
Q 002218 713 CATTLVDFGCGSGSLLDSLLDYPTALEKIVGVDISQKSLSRAAKIIHSKLSKKLDAAVPCTDVKSAVLFDGSITVFD--S 790 (952)
Q Consensus 713 k~krVLDIGCGeG~ll~~LAr~g~~~~qVVGVDISeemLe~ArkrLsa~la~~~~~l~Pr~~~~nVtf~qGDa~dLp--f 790 (952)
++.+|||||||+|.++..+++.. +..+|+|||+|+.+++.|++++... +..+++++++|+.+++ +
T Consensus 41 ~~~~vLDiGcG~G~~~~~la~~~-p~~~v~gvD~s~~~l~~a~~~~~~~------------~~~~v~~~~~d~~~~~~~~ 107 (214)
T 1yzh_A 41 DNPIHVEVGSGKGAFVSGMAKQN-PDINYIGIDIQKSVLSYALDKVLEV------------GVPNIKLLWVDGSDLTDYF 107 (214)
T ss_dssp CCCEEEEESCTTSHHHHHHHHHC-TTSEEEEEESCHHHHHHHHHHHHHH------------CCSSEEEEECCSSCGGGTS
T ss_pred CCCeEEEEccCcCHHHHHHHHHC-CCCCEEEEEcCHHHHHHHHHHHHHc------------CCCCEEEEeCCHHHHHhhc
Confidence 56899999999999999999875 3479999999999999998876431 3358999999999876 5
Q ss_pred CCCCccEEEEccccccCChh------HHHHHHHHHHHccCCC-EEEEEecCCch
Q 002218 791 RLHGFDIGTCLEVIEHMEED------EASQFGNIVLSSFRPR-ILIVSTPNYEY 837 (952)
Q Consensus 791 ~d~sFDVVVcieVIEHL~dD------~l~~L~eeI~RvLKPG-~LIISTPN~ef 837 (952)
..+.||+|++.....+.... ....+.+.+.++|+|| .+++.+.+.++
T Consensus 108 ~~~~~D~i~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~ 161 (214)
T 1yzh_A 108 EDGEIDRLYLNFSDPWPKKRHEKRRLTYKTFLDTFKRILPENGEIHFKTDNRGL 161 (214)
T ss_dssp CTTCCSEEEEESCCCCCSGGGGGGSTTSHHHHHHHHHHSCTTCEEEEEESCHHH
T ss_pred CCCCCCEEEEECCCCccccchhhhccCCHHHHHHHHHHcCCCcEEEEEeCCHHH
Confidence 67789999998665433211 1134566799999999 88888876443
No 104
>2fca_A TRNA (guanine-N(7)-)-methyltransferase; 2.10A {Bacillus subtilis} SCOP: c.66.1.53
Probab=99.26 E-value=1.7e-11 Score=123.92 Aligned_cols=112 Identities=9% Similarity=0.070 Sum_probs=86.2
Q ss_pred CCCEEEEEcCccchHHHHHhcCCCCCceEEEEeCChHHHHHHHHHHhhhhhcccccCCCCCCCccEEEEEcCccccC--C
Q 002218 713 CATTLVDFGCGSGSLLDSLLDYPTALEKIVGVDISQKSLSRAAKIIHSKLSKKLDAAVPCTDVKSAVLFDGSITVFD--S 790 (952)
Q Consensus 713 k~krVLDIGCGeG~ll~~LAr~g~~~~qVVGVDISeemLe~ArkrLsa~la~~~~~l~Pr~~~~nVtf~qGDa~dLp--f 790 (952)
.+.+|||||||+|.++..|++.. +..+|+|||+|+.+++.|++++.. .+..+++++++|+.+++ +
T Consensus 38 ~~~~vLDiGcG~G~~~~~la~~~-p~~~v~giD~s~~~l~~a~~~~~~------------~~~~nv~~~~~d~~~l~~~~ 104 (213)
T 2fca_A 38 DNPIHIEVGTGKGQFISGMAKQN-PDINYIGIELFKSVIVTAVQKVKD------------SEAQNVKLLNIDADTLTDVF 104 (213)
T ss_dssp CCCEEEEECCTTSHHHHHHHHHC-TTSEEEEECSCHHHHHHHHHHHHH------------SCCSSEEEECCCGGGHHHHC
T ss_pred CCceEEEEecCCCHHHHHHHHHC-CCCCEEEEEechHHHHHHHHHHHH------------cCCCCEEEEeCCHHHHHhhc
Confidence 56799999999999999999874 347999999999999999887642 23458999999998875 5
Q ss_pred CCCCccEEEEccccccCChh------HHHHHHHHHHHccCCC-EEEEEecCCch
Q 002218 791 RLHGFDIGTCLEVIEHMEED------EASQFGNIVLSSFRPR-ILIVSTPNYEY 837 (952)
Q Consensus 791 ~d~sFDVVVcieVIEHL~dD------~l~~L~eeI~RvLKPG-~LIISTPN~ef 837 (952)
..+.||.|++.....+.... ....+.+++.++|||| .+++.|.+.++
T Consensus 105 ~~~~~d~v~~~~~~p~~~~~~~~~rl~~~~~l~~~~~~LkpgG~l~~~td~~~~ 158 (213)
T 2fca_A 105 EPGEVKRVYLNFSDPWPKKRHEKRRLTYSHFLKKYEEVMGKGGSIHFKTDNRGL 158 (213)
T ss_dssp CTTSCCEEEEESCCCCCSGGGGGGSTTSHHHHHHHHHHHTTSCEEEEEESCHHH
T ss_pred CcCCcCEEEEECCCCCcCccccccccCcHHHHHHHHHHcCCCCEEEEEeCCHHH
Confidence 67789999876543332210 0135567899999999 88888876443
No 105
>2ip2_A Probable phenazine-specific methyltransferase; pyocyanin, phenazine-1-carboxy PHZM; 1.80A {Pseudomonas aeruginosa}
Probab=99.26 E-value=3.1e-11 Score=128.69 Aligned_cols=114 Identities=19% Similarity=0.177 Sum_probs=89.9
Q ss_pred HHHHHhhcCCCCEEEEEcCccchHHHHHhcCCCCCceEEEEeCChHHHHHHHHHHhhhhhcccccCCCCCCCccEEEEEc
Q 002218 704 YALQHIKESCATTLVDFGCGSGSLLDSLLDYPTALEKIVGVDISQKSLSRAAKIIHSKLSKKLDAAVPCTDVKSAVLFDG 783 (952)
Q Consensus 704 fVldlL~~~k~krVLDIGCGeG~ll~~LAr~g~~~~qVVGVDISeemLe~ArkrLsa~la~~~~~l~Pr~~~~nVtf~qG 783 (952)
.+.+.+...+ .+|||||||+|.++..+++.. +..+++|+|+ +.+++.|++++.... ...++++..+
T Consensus 159 ~~~~~~~~~~-~~vlDvG~G~G~~~~~l~~~~-p~~~~~~~D~-~~~~~~a~~~~~~~~-----------~~~~v~~~~~ 224 (334)
T 2ip2_A 159 EIPRLLDFRG-RSFVDVGGGSGELTKAILQAE-PSARGVMLDR-EGSLGVARDNLSSLL-----------AGERVSLVGG 224 (334)
T ss_dssp HHHHHSCCTT-CEEEEETCTTCHHHHHHHHHC-TTCEEEEEEC-TTCTHHHHHHTHHHH-----------HTTSEEEEES
T ss_pred HHHHhCCCCC-CEEEEeCCCchHHHHHHHHHC-CCCEEEEeCc-HHHHHHHHHHHhhcC-----------CCCcEEEecC
Confidence 3444443344 899999999999999998875 3479999999 999999988754211 1237999999
Q ss_pred CccccCCCCCCccEEEEccccccCChhHHHHHHHHHHHccCCC-EEEEEec
Q 002218 784 SITVFDSRLHGFDIGTCLEVIEHMEEDEASQFGNIVLSSFRPR-ILIVSTP 833 (952)
Q Consensus 784 Da~dLpf~d~sFDVVVcieVIEHL~dD~l~~L~eeI~RvLKPG-~LIISTP 833 (952)
|+.+ +.+ .+||+|++..++||++++....+.+++.++|+|| .+++..+
T Consensus 225 d~~~-~~~-~~~D~v~~~~vl~~~~~~~~~~~l~~~~~~L~pgG~l~i~e~ 273 (334)
T 2ip2_A 225 DMLQ-EVP-SNGDIYLLSRIIGDLDEAASLRLLGNCREAMAGDGRVVVIER 273 (334)
T ss_dssp CTTT-CCC-SSCSEEEEESCGGGCCHHHHHHHHHHHHHHSCTTCEEEEEEC
T ss_pred CCCC-CCC-CCCCEEEEchhccCCCHHHHHHHHHHHHHhcCCCCEEEEEEe
Confidence 9977 443 6799999999999999777667778899999998 7777654
No 106
>3evz_A Methyltransferase; NYSGXRC, NEW YORK SGX research CE structural genomics, protein structure initiative, pyrococc furiosus, PSI-2; 2.20A {Pyrococcus furiosus}
Probab=99.26 E-value=1e-10 Score=117.51 Aligned_cols=147 Identities=11% Similarity=0.078 Sum_probs=103.4
Q ss_pred CCCCEEEEEcCc-cchHHHHHhcC-CCCCceEEEEeCChHHHHHHHHHHhhhhhcccccCCCCCCCccEEEEEcCcccc-
Q 002218 712 SCATTLVDFGCG-SGSLLDSLLDY-PTALEKIVGVDISQKSLSRAAKIIHSKLSKKLDAAVPCTDVKSAVLFDGSITVF- 788 (952)
Q Consensus 712 ~k~krVLDIGCG-eG~ll~~LAr~-g~~~~qVVGVDISeemLe~ArkrLsa~la~~~~~l~Pr~~~~nVtf~qGDa~dL- 788 (952)
.++.+|||+||| +|.++..+++. + .+|+|+|+|+.+++.|++++.. .+. +++++++|+..+
T Consensus 54 ~~~~~vLDlG~G~~G~~~~~la~~~~---~~v~~vD~s~~~~~~a~~~~~~------------~~~-~v~~~~~d~~~~~ 117 (230)
T 3evz_A 54 RGGEVALEIGTGHTAMMALMAEKFFN---CKVTATEVDEEFFEYARRNIER------------NNS-NVRLVKSNGGIIK 117 (230)
T ss_dssp CSSCEEEEECCTTTCHHHHHHHHHHC---CEEEEEECCHHHHHHHHHHHHH------------TTC-CCEEEECSSCSST
T ss_pred CCCCEEEEcCCCHHHHHHHHHHHhcC---CEEEEEECCHHHHHHHHHHHHH------------hCC-CcEEEeCCchhhh
Confidence 367899999999 99999999987 4 7999999999999999987652 123 799999997544
Q ss_pred CCCCCCccEEEEccccccCChh-----------------HHHHHHHHHHHccCCC-EEEEEecCCchhHHHHhhccCccC
Q 002218 789 DSRLHGFDIGTCLEVIEHMEED-----------------EASQFGNIVLSSFRPR-ILIVSTPNYEYNAILQKSSSTIQE 850 (952)
Q Consensus 789 pf~d~sFDVVVcieVIEHL~dD-----------------~l~~L~eeI~RvLKPG-~LIISTPN~efN~lf~~L~~~ta~ 850 (952)
+...+.||+|++.-...+.... ....+.+++.++|||| .+++.+|...
T Consensus 118 ~~~~~~fD~I~~npp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~-------------- 183 (230)
T 3evz_A 118 GVVEGTFDVIFSAPPYYDKPLGRVLTEREAIGGGKYGEEFSVKLLEEAFDHLNPGGKVALYLPDKE-------------- 183 (230)
T ss_dssp TTCCSCEEEEEECCCCC---------------CCSSSCHHHHHHHHHHGGGEEEEEEEEEEEESCH--------------
T ss_pred hcccCceeEEEECCCCcCCccccccChhhhhccCccchHHHHHHHHHHHHHhCCCeEEEEEecccH--------------
Confidence 3345789999998665554321 1245667899999999 7777666521
Q ss_pred CCCcchhhhccccccCCCCccccCHHHHHHHHHHHHHHcCcEEEEEeecCCCCCCCCccceeeeeecCC
Q 002218 851 DDPDEKTQLQSCKFRNHDHKFEWTRDQFNCWATELAARHNYSVEFSGVGGSGDREPGFASQIAVFRSRT 919 (952)
Q Consensus 851 eYPde~~g~~~~~fRh~DHkFEWTReEFqsWae~La~q~GYsVefsGVG~~p~ge~G~aTQIAVFrRk~ 919 (952)
...+++. .++.++||.++......+ .....+-+|.|..
T Consensus 184 ----------------------~~~~~~~----~~l~~~g~~~~~~~~~~g-----~~~~~~l~f~~~~ 221 (230)
T 3evz_A 184 ----------------------KLLNVIK----ERGIKLGYSVKDIKFKVG-----TRWRHSLIFFKGI 221 (230)
T ss_dssp ----------------------HHHHHHH----HHHHHTTCEEEEEEECCC-----C-CEEEEEEECCC
T ss_pred ----------------------hHHHHHH----HHHHHcCCceEEEEecCC-----CeEEEEEEEeccc
Confidence 0112333 456678998877655432 2257888998833
No 107
>1dl5_A Protein-L-isoaspartate O-methyltransferase; isoaspartyl residues, protein repair, deamidation, post-translational modification; HET: SAH; 1.80A {Thermotoga maritima} SCOP: c.66.1.7 d.197.1.1
Probab=99.26 E-value=1.2e-11 Score=132.55 Aligned_cols=116 Identities=10% Similarity=0.115 Sum_probs=93.3
Q ss_pred HHHHHHHHHHhhcCCCCEEEEEcCccchHHHHHhcCCCCCceEEEEeCChHHHHHHHHHHhhhhhcccccCCCCCCCccE
Q 002218 699 KQRVEYALQHIKESCATTLVDFGCGSGSLLDSLLDYPTALEKIVGVDISQKSLSRAAKIIHSKLSKKLDAAVPCTDVKSA 778 (952)
Q Consensus 699 ~QR~efVldlL~~~k~krVLDIGCGeG~ll~~LAr~g~~~~qVVGVDISeemLe~ArkrLsa~la~~~~~l~Pr~~~~nV 778 (952)
+.....+.+.+...++.+|||||||+|.++..+++.+....+|+|+|+|+++++.|++++.. .+..++
T Consensus 61 ~~~~~~l~~~l~~~~~~~VLDiGcG~G~~~~~la~~~~~~~~v~gvD~s~~~~~~a~~~~~~------------~g~~~v 128 (317)
T 1dl5_A 61 PSLMALFMEWVGLDKGMRVLEIGGGTGYNAAVMSRVVGEKGLVVSVEYSRKICEIAKRNVER------------LGIENV 128 (317)
T ss_dssp HHHHHHHHHHTTCCTTCEEEEECCTTSHHHHHHHHHHCTTCEEEEEESCHHHHHHHHHHHHH------------TTCCSE
T ss_pred HHHHHHHHHhcCCCCcCEEEEecCCchHHHHHHHHhcCCCCEEEEEECCHHHHHHHHHHHHH------------cCCCCe
Confidence 34455677777777889999999999999999998762235699999999999999987642 233469
Q ss_pred EEEEcCccccCCCCCCccEEEEccccccCChhHHHHHHHHHHHccCCC-EEEEEecC
Q 002218 779 VLFDGSITVFDSRLHGFDIGTCLEVIEHMEEDEASQFGNIVLSSFRPR-ILIVSTPN 834 (952)
Q Consensus 779 tf~qGDa~dLpf~d~sFDVVVcieVIEHL~dD~l~~L~eeI~RvLKPG-~LIISTPN 834 (952)
++.++|+.+.....+.||+|++..+++|+. +.+.++|||| .+++..+.
T Consensus 129 ~~~~~d~~~~~~~~~~fD~Iv~~~~~~~~~--------~~~~~~LkpgG~lvi~~~~ 177 (317)
T 1dl5_A 129 IFVCGDGYYGVPEFSPYDVIFVTVGVDEVP--------ETWFTQLKEGGRVIVPINL 177 (317)
T ss_dssp EEEESCGGGCCGGGCCEEEEEECSBBSCCC--------HHHHHHEEEEEEEEEEBCB
T ss_pred EEEECChhhccccCCCeEEEEEcCCHHHHH--------HHHHHhcCCCcEEEEEECC
Confidence 999999988655567899999999999998 3578899998 66676544
No 108
>3fzg_A 16S rRNA methylase; methyltransferase, plasmid, transferase; HET: SAM; 2.00A {Escherichia coli}
Probab=99.25 E-value=8.5e-12 Score=128.12 Aligned_cols=119 Identities=16% Similarity=0.184 Sum_probs=92.7
Q ss_pred hhHHHHHHHHHHHhhcCCCCEEEEEcCccchHHHHHhcCCCCCceEEEEeCChHHHHHHHHHHhhhhhcccccCCCCCCC
Q 002218 696 PLSKQRVEYALQHIKESCATTLVDFGCGSGSLLDSLLDYPTALEKIVGVDISQKSLSRAAKIIHSKLSKKLDAAVPCTDV 775 (952)
Q Consensus 696 PL~~QR~efVldlL~~~k~krVLDIGCGeG~ll~~LAr~g~~~~qVVGVDISeemLe~ArkrLsa~la~~~~~l~Pr~~~ 775 (952)
|..+.-|..+...+. ++.+|||||||+|-++..++... +..+|+|+|+|+.|++.+++++.. .+.
T Consensus 34 p~ld~fY~~~~~~l~--~~~~VLDlGCG~GplAl~l~~~~-p~a~~~A~Di~~~~leiar~~~~~------------~g~ 98 (200)
T 3fzg_A 34 ATLNDFYTYVFGNIK--HVSSILDFGCGFNPLALYQWNEN-EKIIYHAYDIDRAEIAFLSSIIGK------------LKT 98 (200)
T ss_dssp GGHHHHHHHHHHHSC--CCSEEEEETCTTHHHHHHHHCSS-CCCEEEEECSCHHHHHHHHHHHHH------------SCC
T ss_pred HhHHHHHHHHHhhcC--CCCeEEEecCCCCHHHHHHHhcC-CCCEEEEEeCCHHHHHHHHHHHHh------------cCC
Confidence 444445667777663 57899999999999999998775 346999999999999999988753 233
Q ss_pred c-cEEEEEcCccccCCCCCCccEEEEccccccCChhHHHHHHHHHHHccCCCEEEEEecC
Q 002218 776 K-SAVLFDGSITVFDSRLHGFDIGTCLEVIEHMEEDEASQFGNIVLSSFRPRILIVSTPN 834 (952)
Q Consensus 776 ~-nVtf~qGDa~dLpf~d~sFDVVVcieVIEHL~dD~l~~L~eeI~RvLKPG~LIISTPN 834 (952)
. ++++ +|.... ...+.||+|+...+|||+ ++....+. .+++.|+||.++|+-|-
T Consensus 99 ~~~v~~--~d~~~~-~~~~~~DvVLa~k~LHlL-~~~~~al~-~v~~~L~pggvfISfpt 153 (200)
T 3fzg_A 99 TIKYRF--LNKESD-VYKGTYDVVFLLKMLPVL-KQQDVNIL-DFLQLFHTQNFVISFPI 153 (200)
T ss_dssp SSEEEE--ECCHHH-HTTSEEEEEEEETCHHHH-HHTTCCHH-HHHHTCEEEEEEEEEEC
T ss_pred CccEEE--eccccc-CCCCCcChhhHhhHHHhh-hhhHHHHH-HHHHHhCCCCEEEEeCh
Confidence 3 5666 555444 345789999999999999 56656665 59999999999999884
No 109
>4dzr_A Protein-(glutamine-N5) methyltransferase, release specific; structural genomics, PSI-biology; 2.55A {Alicyclobacillus acidocaldarius subsp}
Probab=99.25 E-value=4.1e-12 Score=124.39 Aligned_cols=126 Identities=15% Similarity=0.113 Sum_probs=74.3
Q ss_pred hhHHHHHHHHHHHhhc-CCCCEEEEEcCccchHHHHHhcCCCCCceEEEEeCChHHHHHHHHHHhhhhhcccccCCCCCC
Q 002218 696 PLSKQRVEYALQHIKE-SCATTLVDFGCGSGSLLDSLLDYPTALEKIVGVDISQKSLSRAAKIIHSKLSKKLDAAVPCTD 774 (952)
Q Consensus 696 PL~~QR~efVldlL~~-~k~krVLDIGCGeG~ll~~LAr~g~~~~qVVGVDISeemLe~ArkrLsa~la~~~~~l~Pr~~ 774 (952)
|.....++.+.+.+.. .++.+|||+|||+|.++..+++.+ +..+++|+|+|+.+++.|++++.. .+
T Consensus 12 ~~~~~~~~~~~~~l~~~~~~~~vLDiG~G~G~~~~~l~~~~-~~~~v~~vD~~~~~~~~a~~~~~~------------~~ 78 (215)
T 4dzr_A 12 PDTEVLVEEAIRFLKRMPSGTRVIDVGTGSGCIAVSIALAC-PGVSVTAVDLSMDALAVARRNAER------------FG 78 (215)
T ss_dssp HHHHHHHHHHHHHHTTCCTTEEEEEEESSBCHHHHHHHHHC-TTEEEEEEECC---------------------------
T ss_pred ccHHHHHHHHHHHhhhcCCCCEEEEecCCHhHHHHHHHHhC-CCCeEEEEECCHHHHHHHHHHHHH------------hC
Confidence 3344555666666655 577899999999999999999875 347999999999999999876532 12
Q ss_pred CccEEEEEcCccccCCCC-----CCccEEEEc------cccccCChhHH------------------HHHHHHHHHccCC
Q 002218 775 VKSAVLFDGSITVFDSRL-----HGFDIGTCL------EVIEHMEEDEA------------------SQFGNIVLSSFRP 825 (952)
Q Consensus 775 ~~nVtf~qGDa~dLpf~d-----~sFDVVVci------eVIEHL~dD~l------------------~~L~eeI~RvLKP 825 (952)
. ++++.++|+.+ ++.. ++||+|++. ..++|+..+.. ..+.+++.++|||
T Consensus 79 ~-~~~~~~~d~~~-~~~~~~~~~~~fD~i~~npp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~Lkp 156 (215)
T 4dzr_A 79 A-VVDWAAADGIE-WLIERAERGRPWHAIVSNPPYIPTGEIDQLEPSVRDYEPRLALDGGEDGLQFYRRMAALPPYVLAR 156 (215)
T ss_dssp -----CCHHHHHH-HHHHHHHTTCCBSEEEECCCCCC------------------------CTTHHHHHHHTCCGGGBCS
T ss_pred C-ceEEEEcchHh-hhhhhhhccCcccEEEECCCCCCCccccccChhhhccCccccccCCCcHHHHHHHHHHHHHHHhcC
Confidence 2 78899999987 4444 899999994 44555553332 4566678999999
Q ss_pred C-E-EEEEecCCc
Q 002218 826 R-I-LIVSTPNYE 836 (952)
Q Consensus 826 G-~-LIISTPN~e 836 (952)
| . +++..+...
T Consensus 157 gG~l~~~~~~~~~ 169 (215)
T 4dzr_A 157 GRAGVFLEVGHNQ 169 (215)
T ss_dssp SSEEEEEECTTSC
T ss_pred CCeEEEEEECCcc
Confidence 9 6 666665433
No 110
>3dxy_A TRNA (guanine-N(7)-)-methyltransferase; rossmann fold methyltransferase, tRNA modification, S-adenosyl-L-methionine, TR processing; HET: SAM; 1.50A {Escherichia coli} PDB: 3dxx_A* 3dxz_A*
Probab=99.25 E-value=9.5e-12 Score=127.19 Aligned_cols=115 Identities=10% Similarity=0.131 Sum_probs=88.8
Q ss_pred CCCEEEEEcCccchHHHHHhcCCCCCceEEEEeCChHHHHHHHHHHhhhhhcccccCCCCCCCccEEEEEcCcccc-C--
Q 002218 713 CATTLVDFGCGSGSLLDSLLDYPTALEKIVGVDISQKSLSRAAKIIHSKLSKKLDAAVPCTDVKSAVLFDGSITVF-D-- 789 (952)
Q Consensus 713 k~krVLDIGCGeG~ll~~LAr~g~~~~qVVGVDISeemLe~ArkrLsa~la~~~~~l~Pr~~~~nVtf~qGDa~dL-p-- 789 (952)
.+.+|||||||+|.++..+++.. +..+|+|||+|+.+++.|++++.. .+..+++++++|+.++ +
T Consensus 34 ~~~~vLDiGcG~G~~~~~lA~~~-p~~~v~giD~s~~~l~~a~~~~~~------------~~l~nv~~~~~Da~~~l~~~ 100 (218)
T 3dxy_A 34 EAPVTLEIGFGMGASLVAMAKDR-PEQDFLGIEVHSPGVGACLASAHE------------EGLSNLRVMCHDAVEVLHKM 100 (218)
T ss_dssp CCCEEEEESCTTCHHHHHHHHHC-TTSEEEEECSCHHHHHHHHHHHHH------------TTCSSEEEECSCHHHHHHHH
T ss_pred CCCeEEEEeeeChHHHHHHHHHC-CCCeEEEEEecHHHHHHHHHHHHH------------hCCCcEEEEECCHHHHHHHH
Confidence 56799999999999999999875 347899999999999999887642 2445899999999884 3
Q ss_pred CCCCCccEEEEccccccCChhHH------HHHHHHHHHccCCC-EEEEEecCCchhHH
Q 002218 790 SRLHGFDIGTCLEVIEHMEEDEA------SQFGNIVLSSFRPR-ILIVSTPNYEYNAI 840 (952)
Q Consensus 790 f~d~sFDVVVcieVIEHL~dD~l------~~L~eeI~RvLKPG-~LIISTPN~efN~l 840 (952)
+.+++||.|++.....+...... ..+.+++.++|||| .+++.|.+.+|...
T Consensus 101 ~~~~~~d~v~~~~~~p~~~~~~~~rr~~~~~~l~~~~r~LkpGG~l~i~td~~~~~~~ 158 (218)
T 3dxy_A 101 IPDNSLRMVQLFFPDPWHKARHNKRRIVQVPFAELVKSKLQLGGVFHMATDWEPYAEH 158 (218)
T ss_dssp SCTTCEEEEEEESCCCCCSGGGGGGSSCSHHHHHHHHHHEEEEEEEEEEESCHHHHHH
T ss_pred cCCCChheEEEeCCCCccchhhhhhhhhhHHHHHHHHHHcCCCcEEEEEeCCHHHHHH
Confidence 56789999998754433321111 13667899999999 88888887665543
No 111
>2ift_A Putative methylase HI0767; NESG, Y767_haein, structural genomics, PSI-2, protein structure initiative; 2.30A {Haemophilus influenzae} SCOP: c.66.1.46
Probab=99.24 E-value=1.5e-11 Score=123.04 Aligned_cols=117 Identities=16% Similarity=0.144 Sum_probs=85.6
Q ss_pred HHHHHHhhc-CCCCEEEEEcCccchHHHHHhcCCCCCceEEEEeCChHHHHHHHHHHhhhhhcccccCCCCCCC--ccEE
Q 002218 703 EYALQHIKE-SCATTLVDFGCGSGSLLDSLLDYPTALEKIVGVDISQKSLSRAAKIIHSKLSKKLDAAVPCTDV--KSAV 779 (952)
Q Consensus 703 efVldlL~~-~k~krVLDIGCGeG~ll~~LAr~g~~~~qVVGVDISeemLe~ArkrLsa~la~~~~~l~Pr~~~--~nVt 779 (952)
+.+.+.+.. .++.+|||+|||+|.++..++..+. .+|+|+|+|+.|++.|++++.. .+. .+++
T Consensus 42 ~~l~~~l~~~~~~~~vLDlGcGtG~~~~~~~~~~~--~~v~gvD~s~~~l~~a~~~~~~------------~~~~~~~v~ 107 (201)
T 2ift_A 42 ETLFNWLMPYIHQSECLDGFAGSGSLGFEALSRQA--KKVTFLELDKTVANQLKKNLQT------------LKCSSEQAE 107 (201)
T ss_dssp HHHHHHHHHHHTTCEEEETTCTTCHHHHHHHHTTC--SEEEEECSCHHHHHHHHHHHHH------------TTCCTTTEE
T ss_pred HHHHHHHHHhcCCCeEEEcCCccCHHHHHHHHccC--CEEEEEECCHHHHHHHHHHHHH------------hCCCccceE
Confidence 344444443 2678999999999999998777662 6899999999999999987652 123 4899
Q ss_pred EEEcCccccCCC--CCC-ccEEEEccccccCChhHHHHHHHHH--HHccCCC-EEEEEecCCc
Q 002218 780 LFDGSITVFDSR--LHG-FDIGTCLEVIEHMEEDEASQFGNIV--LSSFRPR-ILIVSTPNYE 836 (952)
Q Consensus 780 f~qGDa~dLpf~--d~s-FDVVVcieVIEHL~dD~l~~L~eeI--~RvLKPG-~LIISTPN~e 836 (952)
++++|+.++... .+. ||+|++...++ .. +. ..+.+.+ .++|+|| .++++++...
T Consensus 108 ~~~~d~~~~~~~~~~~~~fD~I~~~~~~~-~~-~~-~~~l~~~~~~~~LkpgG~l~i~~~~~~ 167 (201)
T 2ift_A 108 VINQSSLDFLKQPQNQPHFDVVFLDPPFH-FN-LA-EQAISLLCENNWLKPNALIYVETEKDK 167 (201)
T ss_dssp EECSCHHHHTTSCCSSCCEEEEEECCCSS-SC-HH-HHHHHHHHHTTCEEEEEEEEEEEESSS
T ss_pred EEECCHHHHHHhhccCCCCCEEEECCCCC-Cc-cH-HHHHHHHHhcCccCCCcEEEEEECCCC
Confidence 999999876433 568 99999987743 33 33 3344456 6689998 7777776543
No 112
>3ntv_A MW1564 protein; rossmann fold, putative methyltransferase, transferase; HET: MSE; 1.55A {Staphylococcus aureus}
Probab=99.24 E-value=4.6e-11 Score=121.94 Aligned_cols=119 Identities=9% Similarity=0.099 Sum_probs=88.9
Q ss_pred chhHHHHHHHHHHHhhcCCCCEEEEEcCccchHHHHHhcCCCCCceEEEEeCChHHHHHHHHHHhhhhhcccccCCCCCC
Q 002218 695 PPLSKQRVEYALQHIKESCATTLVDFGCGSGSLLDSLLDYPTALEKIVGVDISQKSLSRAAKIIHSKLSKKLDAAVPCTD 774 (952)
Q Consensus 695 PPL~~QR~efVldlL~~~k~krVLDIGCGeG~ll~~LAr~g~~~~qVVGVDISeemLe~ArkrLsa~la~~~~~l~Pr~~ 774 (952)
|........++...+...++.+|||||||+|..+..|++.. +..+|+|+|+++.+++.|++++... ..
T Consensus 53 ~~~~~~~~~~l~~~~~~~~~~~vLDiG~G~G~~~~~la~~~-~~~~v~~vD~~~~~~~~a~~~~~~~-----------~~ 120 (232)
T 3ntv_A 53 PIVDRLTLDLIKQLIRMNNVKNILEIGTAIGYSSMQFASIS-DDIHVTTIERNETMIQYAKQNLATY-----------HF 120 (232)
T ss_dssp CCCCHHHHHHHHHHHHHHTCCEEEEECCSSSHHHHHHHTTC-TTCEEEEEECCHHHHHHHHHHHHHT-----------TC
T ss_pred CCcCHHHHHHHHHHHhhcCCCEEEEEeCchhHHHHHHHHhC-CCCEEEEEECCHHHHHHHHHHHHHc-----------CC
Confidence 44445555566666666688999999999999999999854 3489999999999999999887531 11
Q ss_pred CccEEEEEcCccccC--CCCCCccEEEEccccccCChhHHHHHHHHHHHccCCC-EEEE
Q 002218 775 VKSAVLFDGSITVFD--SRLHGFDIGTCLEVIEHMEEDEASQFGNIVLSSFRPR-ILIV 830 (952)
Q Consensus 775 ~~nVtf~qGDa~dLp--f~d~sFDVVVcieVIEHL~dD~l~~L~eeI~RvLKPG-~LII 830 (952)
..+++++++|+.+.. ...+.||+|++....++. ..+.+.+.++|||| .+++
T Consensus 121 ~~~v~~~~~d~~~~~~~~~~~~fD~V~~~~~~~~~-----~~~l~~~~~~LkpgG~lv~ 174 (232)
T 3ntv_A 121 ENQVRIIEGNALEQFENVNDKVYDMIFIDAAKAQS-----KKFFEIYTPLLKHQGLVIT 174 (232)
T ss_dssp TTTEEEEESCGGGCHHHHTTSCEEEEEEETTSSSH-----HHHHHHHGGGEEEEEEEEE
T ss_pred CCcEEEEECCHHHHHHhhccCCccEEEEcCcHHHH-----HHHHHHHHHhcCCCeEEEE
Confidence 247999999997743 236789999976543332 34556799999999 5555
No 113
>3orh_A Guanidinoacetate N-methyltransferase; structura genomics, structural genomics consortium, SGC; HET: SAH; 1.86A {Homo sapiens} PDB: 1xcj_A* 1xcl_A* 1p1c_A* 1p1b_A* 1khh_A*
Probab=99.24 E-value=2e-11 Score=125.56 Aligned_cols=102 Identities=13% Similarity=0.104 Sum_probs=80.6
Q ss_pred CCCCEEEEEcCccchHHHHHhcCCCCCceEEEEeCChHHHHHHHHHHhhhhhcccccCCCCCCCccEEEEEcCcccc--C
Q 002218 712 SCATTLVDFGCGSGSLLDSLLDYPTALEKIVGVDISQKSLSRAAKIIHSKLSKKLDAAVPCTDVKSAVLFDGSITVF--D 789 (952)
Q Consensus 712 ~k~krVLDIGCGeG~ll~~LAr~g~~~~qVVGVDISeemLe~ArkrLsa~la~~~~~l~Pr~~~~nVtf~qGDa~dL--p 789 (952)
.++.+|||||||.|..+..+++..+ .+|+|||+|+.+++.|+++... ...+++++.+|+.+. +
T Consensus 59 ~~G~rVLdiG~G~G~~~~~~~~~~~--~~v~~id~~~~~~~~a~~~~~~-------------~~~~~~~~~~~a~~~~~~ 123 (236)
T 3orh_A 59 SKGGRVLEVGFGMAIAASKVQEAPI--DEHWIIECNDGVFQRLRDWAPR-------------QTHKVIPLKGLWEDVAPT 123 (236)
T ss_dssp TTCEEEEEECCTTSHHHHHHTTSCE--EEEEEEECCHHHHHHHHHHGGG-------------CSSEEEEEESCHHHHGGG
T ss_pred cCCCeEEEECCCccHHHHHHHHhCC--cEEEEEeCCHHHHHHHHHHHhh-------------CCCceEEEeehHHhhccc
Confidence 4678999999999999999998763 7899999999999999886532 235789999998764 4
Q ss_pred CCCCCccEEEE-----ccccccCChhHHHHHHHHHHHccCCC-EEEE
Q 002218 790 SRLHGFDIGTC-----LEVIEHMEEDEASQFGNIVLSSFRPR-ILIV 830 (952)
Q Consensus 790 f~d~sFDVVVc-----ieVIEHL~dD~l~~L~eeI~RvLKPG-~LII 830 (952)
+.+++||.|+. .++++|+. +. ..+.++++|+|||| .+++
T Consensus 124 ~~~~~FD~i~~D~~~~~~~~~~~~-~~-~~~~~e~~rvLkPGG~l~f 168 (236)
T 3orh_A 124 LPDGHFDGILYDTYPLSEETWHTH-QF-NFIKNHAFRLLKPGGVLTY 168 (236)
T ss_dssp SCTTCEEEEEECCCCCBGGGTTTH-HH-HHHHHTHHHHEEEEEEEEE
T ss_pred ccccCCceEEEeeeecccchhhhc-ch-hhhhhhhhheeCCCCEEEE
Confidence 56788999974 55667776 33 34556799999999 5544
No 114
>2esr_A Methyltransferase; structural genomics, hypothetical protein, streptococcus PYO PSI, protein structure initiative; HET: GLC; 1.80A {Streptococcus pyogenes} SCOP: c.66.1.46
Probab=99.24 E-value=2.5e-11 Score=117.24 Aligned_cols=120 Identities=13% Similarity=0.028 Sum_probs=87.1
Q ss_pred HHHHHHHHhh-cCCCCEEEEEcCccchHHHHHhcCCCCCceEEEEeCChHHHHHHHHHHhhhhhcccccCCCCCCCccEE
Q 002218 701 RVEYALQHIK-ESCATTLVDFGCGSGSLLDSLLDYPTALEKIVGVDISQKSLSRAAKIIHSKLSKKLDAAVPCTDVKSAV 779 (952)
Q Consensus 701 R~efVldlL~-~~k~krVLDIGCGeG~ll~~LAr~g~~~~qVVGVDISeemLe~ArkrLsa~la~~~~~l~Pr~~~~nVt 779 (952)
-.+.+.+.+. ..++.+|||+|||+|.++..+++.+. .+|+|+|+|+.+++.|++++... ....+++
T Consensus 18 ~~~~~~~~l~~~~~~~~vLDlGcG~G~~~~~l~~~~~--~~v~~vD~~~~~~~~a~~~~~~~-----------~~~~~~~ 84 (177)
T 2esr_A 18 VRGAIFNMIGPYFNGGRVLDLFAGSGGLAIEAVSRGM--SAAVLVEKNRKAQAIIQDNIIMT-----------KAENRFT 84 (177)
T ss_dssp CHHHHHHHHCSCCCSCEEEEETCTTCHHHHHHHHTTC--CEEEEECCCHHHHHHHHHHHHTT-----------TCGGGEE
T ss_pred HHHHHHHHHHhhcCCCeEEEeCCCCCHHHHHHHHcCC--CEEEEEECCHHHHHHHHHHHHHc-----------CCCCceE
Confidence 3345555555 45678999999999999999998752 69999999999999999876421 1123799
Q ss_pred EEEcCccc-cCCCCCCccEEEEccccccCChhHHHHHHHHHH--HccCCC-EEEEEecCCc
Q 002218 780 LFDGSITV-FDSRLHGFDIGTCLEVIEHMEEDEASQFGNIVL--SSFRPR-ILIVSTPNYE 836 (952)
Q Consensus 780 f~qGDa~d-Lpf~d~sFDVVVcieVIEHL~dD~l~~L~eeI~--RvLKPG-~LIISTPN~e 836 (952)
++++|+.+ ++.....||+|++...+++ .....+.+.+. ++|+|| .+++.++...
T Consensus 85 ~~~~d~~~~~~~~~~~fD~i~~~~~~~~---~~~~~~~~~l~~~~~L~~gG~l~~~~~~~~ 142 (177)
T 2esr_A 85 LLKMEAERAIDCLTGRFDLVFLDPPYAK---ETIVATIEALAAKNLLSEQVMVVCETDKTV 142 (177)
T ss_dssp EECSCHHHHHHHBCSCEEEEEECCSSHH---HHHHHHHHHHHHTTCEEEEEEEEEEEETTC
T ss_pred EEECcHHHhHHhhcCCCCEEEECCCCCc---chHHHHHHHHHhCCCcCCCcEEEEEECCcc
Confidence 99999987 3434567999999766432 11223334465 999999 7777777643
No 115
>3ckk_A TRNA (guanine-N(7)-)-methyltransferase; mettl1, S-adenosyl-L-methionine, tRNA Pro structural genomics, structural genomics consortium, SGC; HET: SAM; 1.55A {Homo sapiens}
Probab=99.23 E-value=3.6e-11 Score=124.40 Aligned_cols=121 Identities=16% Similarity=0.138 Sum_probs=87.0
Q ss_pred CCCEEEEEcCccchHHHHHhcCCCCCceEEEEeCChHHHHHHHHHHhhhhhcccccCCCCCCCccEEEEEcCccc-cC--
Q 002218 713 CATTLVDFGCGSGSLLDSLLDYPTALEKIVGVDISQKSLSRAAKIIHSKLSKKLDAAVPCTDVKSAVLFDGSITV-FD-- 789 (952)
Q Consensus 713 k~krVLDIGCGeG~ll~~LAr~g~~~~qVVGVDISeemLe~ArkrLsa~la~~~~~l~Pr~~~~nVtf~qGDa~d-Lp-- 789 (952)
+..+|||||||+|.++..|++.. +..+|+|||+|+.|++.|++++...... ...+..+++++++|+.+ ++
T Consensus 46 ~~~~vLDiGcG~G~~~~~la~~~-p~~~v~GiDis~~~l~~A~~~~~~l~~~------~~~~~~nv~~~~~d~~~~l~~~ 118 (235)
T 3ckk_A 46 AQVEFADIGCGYGGLLVELSPLF-PDTLILGLEIRVKVSDYVQDRIRALRAA------PAGGFQNIACLRSNAMKHLPNF 118 (235)
T ss_dssp CCEEEEEETCTTCHHHHHHGGGS-TTSEEEEEESCHHHHHHHHHHHHHHHHS------TTCCCTTEEEEECCTTTCHHHH
T ss_pred CCCeEEEEccCCcHHHHHHHHHC-CCCeEEEEECCHHHHHHHHHHHHHHHHH------HhcCCCeEEEEECcHHHhhhhh
Confidence 56789999999999999999875 3479999999999999998776431100 01234689999999987 66
Q ss_pred CCCCCccEEEEccccccCChh--H----HHHHHHHHHHccCCC-EEEEEecCCchhHH
Q 002218 790 SRLHGFDIGTCLEVIEHMEED--E----ASQFGNIVLSSFRPR-ILIVSTPNYEYNAI 840 (952)
Q Consensus 790 f~d~sFDVVVcieVIEHL~dD--~----l~~L~eeI~RvLKPG-~LIISTPN~efN~l 840 (952)
+..+.||.|++...-.|.... . ...+.+++.++|||| .+++.|.+.++...
T Consensus 119 ~~~~~~D~v~~~~~dp~~k~~h~krr~~~~~~l~~~~~~LkpGG~l~~~td~~~~~~~ 176 (235)
T 3ckk_A 119 FYKGQLTKMFFLFPDPHFKRTKHKWRIISPTLLAEYAYVLRVGGLVYTITDVLELHDW 176 (235)
T ss_dssp CCTTCEEEEEEESCC-----------CCCHHHHHHHHHHEEEEEEEEEEESCHHHHHH
T ss_pred CCCcCeeEEEEeCCCchhhhhhhhhhhhhHHHHHHHHHHCCCCCEEEEEeCCHHHHHH
Confidence 667899999875433222100 0 024667899999999 88888887665543
No 116
>1ws6_A Methyltransferase; structural genomics, riken structural genomics/proteomics initiative, RSGI; 2.50A {Thermus thermophilus} SCOP: c.66.1.46
Probab=99.21 E-value=1.6e-11 Score=116.56 Aligned_cols=116 Identities=10% Similarity=0.028 Sum_probs=84.7
Q ss_pred HHHHHHHHhhc-C-CCCEEEEEcCccchHHHHHhcCCCCCceEEEEeCChHHHHHHHHHHhhhhhcccccCCCCCCCccE
Q 002218 701 RVEYALQHIKE-S-CATTLVDFGCGSGSLLDSLLDYPTALEKIVGVDISQKSLSRAAKIIHSKLSKKLDAAVPCTDVKSA 778 (952)
Q Consensus 701 R~efVldlL~~-~-k~krVLDIGCGeG~ll~~LAr~g~~~~qVVGVDISeemLe~ArkrLsa~la~~~~~l~Pr~~~~nV 778 (952)
..+.+.+.+.. . ++.+|||+|||+|.++..+++.+ .+|+|+|+|+.+++.|++++... +. ++
T Consensus 27 ~~~~~~~~~~~~~~~~~~vLD~GcG~G~~~~~l~~~~---~~v~~vD~~~~~~~~a~~~~~~~------------~~-~~ 90 (171)
T 1ws6_A 27 LRKALFDYLRLRYPRRGRFLDPFAGSGAVGLEAASEG---WEAVLVEKDPEAVRLLKENVRRT------------GL-GA 90 (171)
T ss_dssp HHHHHHHHHHHHCTTCCEEEEETCSSCHHHHHHHHTT---CEEEEECCCHHHHHHHHHHHHHH------------TC-CC
T ss_pred HHHHHHHHHHhhccCCCeEEEeCCCcCHHHHHHHHCC---CeEEEEeCCHHHHHHHHHHHHHc------------CC-ce
Confidence 33445555544 2 67899999999999999999987 45999999999999999876531 22 78
Q ss_pred EEEEcCcccc-CC---CCCCccEEEEccccccCChhHHHHHHHHHH--HccCCC-EEEEEecCCc
Q 002218 779 VLFDGSITVF-DS---RLHGFDIGTCLEVIEHMEEDEASQFGNIVL--SSFRPR-ILIVSTPNYE 836 (952)
Q Consensus 779 tf~qGDa~dL-pf---~d~sFDVVVcieVIEHL~dD~l~~L~eeI~--RvLKPG-~LIISTPN~e 836 (952)
+++++|+.+. +. ...+||+|++...++...++.. +.+. ++|+|| .+++.+++.+
T Consensus 91 ~~~~~d~~~~~~~~~~~~~~~D~i~~~~~~~~~~~~~~----~~~~~~~~L~~gG~~~~~~~~~~ 151 (171)
T 1ws6_A 91 RVVALPVEVFLPEAKAQGERFTVAFMAPPYAMDLAALF----GELLASGLVEAGGLYVLQHPKDL 151 (171)
T ss_dssp EEECSCHHHHHHHHHHTTCCEEEEEECCCTTSCTTHHH----HHHHHHTCEEEEEEEEEEEETTS
T ss_pred EEEeccHHHHHHhhhccCCceEEEEECCCCchhHHHHH----HHHHhhcccCCCcEEEEEeCCcc
Confidence 9999999773 21 1347999999876642221222 3355 999998 7888887654
No 117
>1jg1_A PIMT;, protein-L-isoaspartate O-methyltransferase; rossmann methyltransferase, protein repair isomerization; HET: SAH; 1.20A {Pyrococcus furiosus} SCOP: c.66.1.7 PDB: 1jg2_A* 1jg3_A* 1jg4_A*
Probab=99.21 E-value=4.5e-11 Score=121.61 Aligned_cols=113 Identities=12% Similarity=0.139 Sum_probs=90.3
Q ss_pred HHHHHHHhhcCCCCEEEEEcCccchHHHHHhcCCCCCceEEEEeCChHHHHHHHHHHhhhhhcccccCCCCCCCccEEEE
Q 002218 702 VEYALQHIKESCATTLVDFGCGSGSLLDSLLDYPTALEKIVGVDISQKSLSRAAKIIHSKLSKKLDAAVPCTDVKSAVLF 781 (952)
Q Consensus 702 ~efVldlL~~~k~krVLDIGCGeG~ll~~LAr~g~~~~qVVGVDISeemLe~ArkrLsa~la~~~~~l~Pr~~~~nVtf~ 781 (952)
...+.+.+...++.+|||||||+|.++..+++.++ .+|+|+|+++.+++.|++++.. .+..++++.
T Consensus 80 ~~~~~~~l~~~~~~~vLdiG~G~G~~~~~la~~~~--~~v~~vD~~~~~~~~a~~~~~~------------~~~~~v~~~ 145 (235)
T 1jg1_A 80 VAIMLEIANLKPGMNILEVGTGSGWNAALISEIVK--TDVYTIERIPELVEFAKRNLER------------AGVKNVHVI 145 (235)
T ss_dssp HHHHHHHHTCCTTCCEEEECCTTSHHHHHHHHHHC--SCEEEEESCHHHHHHHHHHHHH------------TTCCSEEEE
T ss_pred HHHHHHhcCCCCCCEEEEEeCCcCHHHHHHHHHhC--CEEEEEeCCHHHHHHHHHHHHH------------cCCCCcEEE
Confidence 34556666666788999999999999999998763 6899999999999999987652 233469999
Q ss_pred EcCccccCCCC-CCccEEEEccccccCChhHHHHHHHHHHHccCCC-EEEEEecCCch
Q 002218 782 DGSITVFDSRL-HGFDIGTCLEVIEHMEEDEASQFGNIVLSSFRPR-ILIVSTPNYEY 837 (952)
Q Consensus 782 qGDa~dLpf~d-~sFDVVVcieVIEHL~dD~l~~L~eeI~RvLKPG-~LIISTPN~ef 837 (952)
.+|+ ..++.. ..||+|++..+++|+. +.+.+.|+|| .+++++++...
T Consensus 146 ~~d~-~~~~~~~~~fD~Ii~~~~~~~~~--------~~~~~~L~pgG~lvi~~~~~~~ 194 (235)
T 1jg1_A 146 LGDG-SKGFPPKAPYDVIIVTAGAPKIP--------EPLIEQLKIGGKLIIPVGSYHL 194 (235)
T ss_dssp ESCG-GGCCGGGCCEEEEEECSBBSSCC--------HHHHHTEEEEEEEEEEECSSSS
T ss_pred ECCc-ccCCCCCCCccEEEECCcHHHHH--------HHHHHhcCCCcEEEEEEecCCC
Confidence 9998 334333 3599999999999998 2578899999 88888887653
No 118
>3grz_A L11 mtase, ribosomal protein L11 methyltransferase; methylase, SAM-binding domain, PSI-2, nysgxrc; 2.00A {Lactobacillus delbrueckii subsp}
Probab=99.21 E-value=3.3e-11 Score=119.27 Aligned_cols=102 Identities=20% Similarity=0.149 Sum_probs=82.0
Q ss_pred CCCCEEEEEcCccchHHHHHhcCCCCCceEEEEeCChHHHHHHHHHHhhhhhcccccCCCCCCCccEEEEEcCccccCCC
Q 002218 712 SCATTLVDFGCGSGSLLDSLLDYPTALEKIVGVDISQKSLSRAAKIIHSKLSKKLDAAVPCTDVKSAVLFDGSITVFDSR 791 (952)
Q Consensus 712 ~k~krVLDIGCGeG~ll~~LAr~g~~~~qVVGVDISeemLe~ArkrLsa~la~~~~~l~Pr~~~~nVtf~qGDa~dLpf~ 791 (952)
.++.+|||+|||+|.++..+++.+. .+|+|+|+|+.+++.|++++.. .+..++++.++|+.+..
T Consensus 59 ~~~~~vLDiG~G~G~~~~~l~~~~~--~~v~~vD~s~~~~~~a~~~~~~------------~~~~~v~~~~~d~~~~~-- 122 (205)
T 3grz_A 59 VKPLTVADVGTGSGILAIAAHKLGA--KSVLATDISDESMTAAEENAAL------------NGIYDIALQKTSLLADV-- 122 (205)
T ss_dssp SSCCEEEEETCTTSHHHHHHHHTTC--SEEEEEESCHHHHHHHHHHHHH------------TTCCCCEEEESSTTTTC--
T ss_pred cCCCEEEEECCCCCHHHHHHHHCCC--CEEEEEECCHHHHHHHHHHHHH------------cCCCceEEEeccccccC--
Confidence 3678999999999999999998752 6999999999999999987653 12334999999997753
Q ss_pred CCCccEEEEccccccCChhHHHHHHHHHHHccCCC-EEEEEecC
Q 002218 792 LHGFDIGTCLEVIEHMEEDEASQFGNIVLSSFRPR-ILIVSTPN 834 (952)
Q Consensus 792 d~sFDVVVcieVIEHL~dD~l~~L~eeI~RvLKPG-~LIISTPN 834 (952)
.+.||+|++..+++|+ ..+.+++.++|+|| .+++.++.
T Consensus 123 ~~~fD~i~~~~~~~~~-----~~~l~~~~~~L~~gG~l~~~~~~ 161 (205)
T 3grz_A 123 DGKFDLIVANILAEIL-----LDLIPQLDSHLNEDGQVIFSGID 161 (205)
T ss_dssp CSCEEEEEEESCHHHH-----HHHGGGSGGGEEEEEEEEEEEEE
T ss_pred CCCceEEEECCcHHHH-----HHHHHHHHHhcCCCCEEEEEecC
Confidence 5789999999888775 34556799999999 66665443
No 119
>3q7e_A Protein arginine N-methyltransferase 1; HET: SAH; 2.20A {Rattus norvegicus} PDB: 1orh_A* 1ori_A* 1or8_A*
Probab=99.21 E-value=5.6e-11 Score=129.54 Aligned_cols=106 Identities=17% Similarity=0.130 Sum_probs=83.0
Q ss_pred hcCCCCEEEEEcCccchHHHHHhcCCCCCceEEEEeCChHHHHHHHHHHhhhhhcccccCCCCCCCccEEEEEcCccccC
Q 002218 710 KESCATTLVDFGCGSGSLLDSLLDYPTALEKIVGVDISQKSLSRAAKIIHSKLSKKLDAAVPCTDVKSAVLFDGSITVFD 789 (952)
Q Consensus 710 ~~~k~krVLDIGCGeG~ll~~LAr~g~~~~qVVGVDISeemLe~ArkrLsa~la~~~~~l~Pr~~~~nVtf~qGDa~dLp 789 (952)
...++++|||||||+|.++..+++.+. .+|+|||+| ++++.|++++... ....+++++++|+.+++
T Consensus 63 ~~~~~~~VLDvGcG~G~~~~~la~~g~--~~v~gvD~s-~~l~~a~~~~~~~-----------~~~~~v~~~~~d~~~~~ 128 (349)
T 3q7e_A 63 HLFKDKVVLDVGSGTGILCMFAAKAGA--RKVIGIECS-SISDYAVKIVKAN-----------KLDHVVTIIKGKVEEVE 128 (349)
T ss_dssp HHHTTCEEEEESCTTSHHHHHHHHTTC--SEEEEEECS-THHHHHHHHHHHT-----------TCTTTEEEEESCTTTCC
T ss_pred ccCCCCEEEEEeccchHHHHHHHHCCC--CEEEEECcH-HHHHHHHHHHHHc-----------CCCCcEEEEECcHHHcc
Confidence 345789999999999999999999862 699999999 5999998876531 12235999999999998
Q ss_pred CCCCCccEEEEccccccCC-hhHHHHHHHHHHHccCCCEEE
Q 002218 790 SRLHGFDIGTCLEVIEHME-EDEASQFGNIVLSSFRPRILI 829 (952)
Q Consensus 790 f~d~sFDVVVcieVIEHL~-dD~l~~L~eeI~RvLKPG~LI 829 (952)
++.++||+|++..+.+++. .+....+.+.+.++||||.++
T Consensus 129 ~~~~~fD~Iis~~~~~~l~~~~~~~~~l~~~~r~LkpgG~l 169 (349)
T 3q7e_A 129 LPVEKVDIIISEWMGYCLFYESMLNTVLHARDKWLAPDGLI 169 (349)
T ss_dssp CSSSCEEEEEECCCBBTBTBTCCHHHHHHHHHHHEEEEEEE
T ss_pred CCCCceEEEEEccccccccCchhHHHHHHHHHHhCCCCCEE
Confidence 8888999999977655542 233445556789999999443
No 120
>3eey_A Putative rRNA methylase; rRNA methylation, S-adenosyl-methionine, structural genomics structure initiative, PSI; HET: SAM; 2.20A {Clostridium thermocellum atcc 27405}
Probab=99.20 E-value=6.9e-11 Score=116.01 Aligned_cols=111 Identities=15% Similarity=0.108 Sum_probs=82.5
Q ss_pred CCCCEEEEEcCccchHHHHHhcCCCCCceEEEEeCChHHHHHHHHHHhhhhhcccccCCCCCCCccEEEEEcCccccC-C
Q 002218 712 SCATTLVDFGCGSGSLLDSLLDYPTALEKIVGVDISQKSLSRAAKIIHSKLSKKLDAAVPCTDVKSAVLFDGSITVFD-S 790 (952)
Q Consensus 712 ~k~krVLDIGCGeG~ll~~LAr~g~~~~qVVGVDISeemLe~ArkrLsa~la~~~~~l~Pr~~~~nVtf~qGDa~dLp-f 790 (952)
.++.+|||+|||+|.++..+++..++..+|+|+|+++.+++.|++++... ....+++++++|+.+++ .
T Consensus 21 ~~~~~vLDlGcG~G~~~~~l~~~~~~~~~v~~vD~s~~~~~~a~~~~~~~-----------~~~~~v~~~~~d~~~~~~~ 89 (197)
T 3eey_A 21 KEGDTVVDATCGNGNDTAFLASLVGENGRVFGFDIQDKAIANTTKKLTDL-----------NLIDRVTLIKDGHQNMDKY 89 (197)
T ss_dssp CTTCEEEESCCTTSHHHHHHHHHHCTTCEEEEECSCHHHHHHHHHHHHHT-----------TCGGGEEEECSCGGGGGGT
T ss_pred CCCCEEEEcCCCCCHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHc-----------CCCCCeEEEECCHHHHhhh
Confidence 46789999999999999999886322369999999999999999886531 11258999999998876 4
Q ss_pred CCCCccEEEEcccc-c-----c-CChhHHHHHHHHHHHccCCC-EEEEEec
Q 002218 791 RLHGFDIGTCLEVI-E-----H-MEEDEASQFGNIVLSSFRPR-ILIVSTP 833 (952)
Q Consensus 791 ~d~sFDVVVcieVI-E-----H-L~dD~l~~L~eeI~RvLKPG-~LIISTP 833 (952)
..+.||+|++...+ . + -..+....+.+++.++|||| .+++.+.
T Consensus 90 ~~~~fD~v~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~Lk~gG~l~~~~~ 140 (197)
T 3eey_A 90 IDCPVKAVMFNLGYLPSGDHSISTRPETTIQALSKAMELLVTGGIITVVIY 140 (197)
T ss_dssp CCSCEEEEEEEESBCTTSCTTCBCCHHHHHHHHHHHHHHEEEEEEEEEEEC
T ss_pred ccCCceEEEEcCCcccCcccccccCcccHHHHHHHHHHhCcCCCEEEEEEc
Confidence 56789999987654 1 0 11122234566799999998 6666543
No 121
>2y1w_A Histone-arginine methyltransferase CARM1; histone modification; HET: SFG 849; 2.10A {Homo sapiens} PDB: 2y1x_A* 3b3f_A* 3b3g_A 2v74_B* 2v7e_A
Probab=99.20 E-value=6.1e-11 Score=129.00 Aligned_cols=115 Identities=17% Similarity=0.148 Sum_probs=88.4
Q ss_pred HHHHHHhhcCCCCEEEEEcCccchHHHHHhcCCCCCceEEEEeCChHHHHHHHHHHhhhhhcccccCCCCCCCccEEEEE
Q 002218 703 EYALQHIKESCATTLVDFGCGSGSLLDSLLDYPTALEKIVGVDISQKSLSRAAKIIHSKLSKKLDAAVPCTDVKSAVLFD 782 (952)
Q Consensus 703 efVldlL~~~k~krVLDIGCGeG~ll~~LAr~g~~~~qVVGVDISeemLe~ArkrLsa~la~~~~~l~Pr~~~~nVtf~q 782 (952)
+.+.+.+...++.+|||||||+|.++..+++.+. .+|+|||+|+ +++.|++++... ....++++++
T Consensus 40 ~~i~~~l~~~~~~~VLDiGcGtG~ls~~la~~g~--~~V~~vD~s~-~~~~a~~~~~~~-----------~l~~~v~~~~ 105 (348)
T 2y1w_A 40 RAILQNHTDFKDKIVLDVGCGSGILSFFAAQAGA--RKIYAVEAST-MAQHAEVLVKSN-----------NLTDRIVVIP 105 (348)
T ss_dssp HHHHHTGGGTTTCEEEEETCTTSHHHHHHHHTTC--SEEEEEECST-HHHHHHHHHHHT-----------TCTTTEEEEE
T ss_pred HHHHhccccCCcCEEEEcCCCccHHHHHHHhCCC--CEEEEECCHH-HHHHHHHHHHHc-----------CCCCcEEEEE
Confidence 3455555666789999999999999999998763 6999999996 888888776421 1224799999
Q ss_pred cCccccCCCCCCccEEEEccccccCChhHHHHHHHHHHHccCCC-EEEEEe
Q 002218 783 GSITVFDSRLHGFDIGTCLEVIEHMEEDEASQFGNIVLSSFRPR-ILIVST 832 (952)
Q Consensus 783 GDa~dLpf~d~sFDVVVcieVIEHL~dD~l~~L~eeI~RvLKPG-~LIIST 832 (952)
+|+.+++.+ .+||+|++..+++|+..+........+.++|||| .+++..
T Consensus 106 ~d~~~~~~~-~~~D~Ivs~~~~~~~~~~~~~~~l~~~~~~LkpgG~li~~~ 155 (348)
T 2y1w_A 106 GKVEEVSLP-EQVDIIISEPMGYMLFNERMLESYLHAKKYLKPSGNMFPTI 155 (348)
T ss_dssp SCTTTCCCS-SCEEEEEECCCBTTBTTTSHHHHHHHGGGGEEEEEEEESCE
T ss_pred cchhhCCCC-CceeEEEEeCchhcCChHHHHHHHHHHHhhcCCCeEEEEec
Confidence 999988654 5799999999999987554333334689999999 555444
No 122
>3tr6_A O-methyltransferase; cellular processes; HET: SAH; 2.70A {Coxiella burnetii} SCOP: c.66.1.0
Probab=99.19 E-value=1.2e-10 Score=116.69 Aligned_cols=119 Identities=12% Similarity=0.007 Sum_probs=84.7
Q ss_pred HHHHHHHHHHhhcCCCCEEEEEcCccchHHHHHhcCCCCCceEEEEeCChHHHHHHHHHHhhhhhcccccCCCCCCCccE
Q 002218 699 KQRVEYALQHIKESCATTLVDFGCGSGSLLDSLLDYPTALEKIVGVDISQKSLSRAAKIIHSKLSKKLDAAVPCTDVKSA 778 (952)
Q Consensus 699 ~QR~efVldlL~~~k~krVLDIGCGeG~ll~~LAr~g~~~~qVVGVDISeemLe~ArkrLsa~la~~~~~l~Pr~~~~nV 778 (952)
.....++..++...++.+|||||||+|..+..+++..++..+|+|+|+++.+++.|++++... ....++
T Consensus 50 ~~~~~~l~~l~~~~~~~~vLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~-----------~~~~~v 118 (225)
T 3tr6_A 50 PEQAQLLALLVKLMQAKKVIDIGTFTGYSAIAMGLALPKDGTLITCDVDEKSTALAKEYWEKA-----------GLSDKI 118 (225)
T ss_dssp HHHHHHHHHHHHHHTCSEEEEECCTTSHHHHHHHTTCCTTCEEEEEESCHHHHHHHHHHHHHT-----------TCTTTE
T ss_pred HHHHHHHHHHHHhhCCCEEEEeCCcchHHHHHHHHhCCCCCEEEEEeCCHHHHHHHHHHHHHC-----------CCCCce
Confidence 333445555555557889999999999999999987422489999999999999999887531 122369
Q ss_pred EEEEcCccccCC--CC----CCccEEEEccccccCChhHHHHHHHHHHHccCCC-EEEEEec
Q 002218 779 VLFDGSITVFDS--RL----HGFDIGTCLEVIEHMEEDEASQFGNIVLSSFRPR-ILIVSTP 833 (952)
Q Consensus 779 tf~qGDa~dLpf--~d----~sFDVVVcieVIEHL~dD~l~~L~eeI~RvLKPG-~LIISTP 833 (952)
+++++|+.+... .. +.||+|++... . .....+.+.+.++|||| .+++...
T Consensus 119 ~~~~~d~~~~~~~~~~~~~~~~fD~v~~~~~----~-~~~~~~l~~~~~~L~pgG~lv~~~~ 175 (225)
T 3tr6_A 119 GLRLSPAKDTLAELIHAGQAWQYDLIYIDAD----K-ANTDLYYEESLKLLREGGLIAVDNV 175 (225)
T ss_dssp EEEESCHHHHHHHHHTTTCTTCEEEEEECSC----G-GGHHHHHHHHHHHEEEEEEEEEECS
T ss_pred EEEeCCHHHHHHHhhhccCCCCccEEEECCC----H-HHHHHHHHHHHHhcCCCcEEEEeCC
Confidence 999999966421 11 78999986543 2 22234556799999999 6665443
No 123
>2fhp_A Methylase, putative; alpha-beta-alpha sandwich, structural genomics, PSI, protein structure initiative; HET: MSE; 1.60A {Enterococcus faecalis} SCOP: c.66.1.46
Probab=99.19 E-value=5.1e-11 Score=114.99 Aligned_cols=122 Identities=13% Similarity=0.020 Sum_probs=87.8
Q ss_pred HHHHHHHHHHhhc-CCCCEEEEEcCccchHHHHHhcCCCCCceEEEEeCChHHHHHHHHHHhhhhhcccccCCCCCCCcc
Q 002218 699 KQRVEYALQHIKE-SCATTLVDFGCGSGSLLDSLLDYPTALEKIVGVDISQKSLSRAAKIIHSKLSKKLDAAVPCTDVKS 777 (952)
Q Consensus 699 ~QR~efVldlL~~-~k~krVLDIGCGeG~ll~~LAr~g~~~~qVVGVDISeemLe~ArkrLsa~la~~~~~l~Pr~~~~n 777 (952)
....+.+.+.+.. .++.+|||+|||+|.++..+++.+. .+|+|+|+++.+++.|++++... ....+
T Consensus 29 ~~~~~~~~~~l~~~~~~~~vLD~GcG~G~~~~~~~~~~~--~~v~~vD~~~~~~~~a~~~~~~~-----------~~~~~ 95 (187)
T 2fhp_A 29 DKVKESIFNMIGPYFDGGMALDLYSGSGGLAIEAVSRGM--DKSICIEKNFAALKVIKENIAIT-----------KEPEK 95 (187)
T ss_dssp HHHHHHHHHHHCSCCSSCEEEETTCTTCHHHHHHHHTTC--SEEEEEESCHHHHHHHHHHHHHH-----------TCGGG
T ss_pred HHHHHHHHHHHHhhcCCCCEEEeCCccCHHHHHHHHcCC--CEEEEEECCHHHHHHHHHHHHHh-----------CCCcc
Confidence 3344455566543 4678999999999999998887652 69999999999999999876532 11247
Q ss_pred EEEEEcCccccCC----CCCCccEEEEccccccCChhHHHHHHHHH--HHccCCC-EEEEEecCCc
Q 002218 778 AVLFDGSITVFDS----RLHGFDIGTCLEVIEHMEEDEASQFGNIV--LSSFRPR-ILIVSTPNYE 836 (952)
Q Consensus 778 Vtf~qGDa~dLpf----~d~sFDVVVcieVIEHL~dD~l~~L~eeI--~RvLKPG-~LIISTPN~e 836 (952)
++++++|+.+... ....||+|++...+++...+ .. .+.+ .++|+|| .+++.+++..
T Consensus 96 ~~~~~~d~~~~~~~~~~~~~~fD~i~~~~~~~~~~~~--~~-~~~l~~~~~L~~gG~l~~~~~~~~ 158 (187)
T 2fhp_A 96 FEVRKMDANRALEQFYEEKLQFDLVLLDPPYAKQEIV--SQ-LEKMLERQLLTNEAVIVCETDKTV 158 (187)
T ss_dssp EEEEESCHHHHHHHHHHTTCCEEEEEECCCGGGCCHH--HH-HHHHHHTTCEEEEEEEEEEEETTC
T ss_pred eEEEECcHHHHHHHHHhcCCCCCEEEECCCCCchhHH--HH-HHHHHHhcccCCCCEEEEEeCCcc
Confidence 9999999977432 26789999998774422211 22 2335 8899999 7788887653
No 124
>2pbf_A Protein-L-isoaspartate O-methyltransferase beta-A methyltransferase; protein repair, isoaspartyl formation, P. falciparum; HET: SAH; 2.00A {Plasmodium falciparum}
Probab=99.19 E-value=6.4e-11 Score=118.95 Aligned_cols=116 Identities=14% Similarity=0.173 Sum_probs=88.1
Q ss_pred HHHHHh--hcCCCCEEEEEcCccchHHHHHhcCCC----CCceEEEEeCChHHHHHHHHHHhhhhhcccccCCCCCCCcc
Q 002218 704 YALQHI--KESCATTLVDFGCGSGSLLDSLLDYPT----ALEKIVGVDISQKSLSRAAKIIHSKLSKKLDAAVPCTDVKS 777 (952)
Q Consensus 704 fVldlL--~~~k~krVLDIGCGeG~ll~~LAr~g~----~~~qVVGVDISeemLe~ArkrLsa~la~~~~~l~Pr~~~~n 777 (952)
.+.+.+ ...++.+|||||||+|.++..+++..+ +..+|+|+|+++.+++.|++++....-. .....+
T Consensus 69 ~~~~~l~~~~~~~~~VLdiG~G~G~~~~~la~~~~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~-------~~~~~~ 141 (227)
T 2pbf_A 69 LSLKRLINVLKPGSRAIDVGSGSGYLTVCMAIKMNVLENKNSYVIGLERVKDLVNFSLENIKRDKPE-------LLKIDN 141 (227)
T ss_dssp HHHHHHTTTSCTTCEEEEESCTTSHHHHHHHHHTTTTTCTTCEEEEEESCHHHHHHHHHHHHHHCGG-------GGSSTT
T ss_pred HHHHHHHhhCCCCCEEEEECCCCCHHHHHHHHHhcccCCCCCEEEEEeCCHHHHHHHHHHHHHcCcc-------ccccCC
Confidence 444444 244678999999999999999988652 2359999999999999999876532000 001347
Q ss_pred EEEEEcCccccC----CCCCCccEEEEccccccCChhHHHHHHHHHHHccCCC-EEEEEecC
Q 002218 778 AVLFDGSITVFD----SRLHGFDIGTCLEVIEHMEEDEASQFGNIVLSSFRPR-ILIVSTPN 834 (952)
Q Consensus 778 Vtf~qGDa~dLp----f~d~sFDVVVcieVIEHL~dD~l~~L~eeI~RvLKPG-~LIISTPN 834 (952)
+++.++|+.+.. .....||+|++...++|+. +.+.++|||| .++++++.
T Consensus 142 v~~~~~d~~~~~~~~~~~~~~fD~I~~~~~~~~~~--------~~~~~~LkpgG~lv~~~~~ 195 (227)
T 2pbf_A 142 FKIIHKNIYQVNEEEKKELGLFDAIHVGASASELP--------EILVDLLAENGKLIIPIEE 195 (227)
T ss_dssp EEEEECCGGGCCHHHHHHHCCEEEEEECSBBSSCC--------HHHHHHEEEEEEEEEEEEE
T ss_pred EEEEECChHhcccccCccCCCcCEEEECCchHHHH--------HHHHHhcCCCcEEEEEEcc
Confidence 999999998865 4567899999999999986 4578899998 77777764
No 125
>3fpf_A Mtnas, putative uncharacterized protein; thermonicotianamine, nicotianamine, biosynthetic protein; HET: TNA MTA; 1.66A {Methanothermobacter thermautotrophicusorganism_taxid} PDB: 3fpe_A* 3fph_A* 3fpg_A* 3fpj_A* 3o31_A*
Probab=99.18 E-value=1.2e-10 Score=126.25 Aligned_cols=106 Identities=18% Similarity=0.086 Sum_probs=81.2
Q ss_pred HHhhcCCCCEEEEEcCccchHH-HHHhcCCCCCceEEEEeCChHHHHHHHHHHhhhhhcccccCCCCCCCccEEEEEcCc
Q 002218 707 QHIKESCATTLVDFGCGSGSLL-DSLLDYPTALEKIVGVDISQKSLSRAAKIIHSKLSKKLDAAVPCTDVKSAVLFDGSI 785 (952)
Q Consensus 707 dlL~~~k~krVLDIGCGeG~ll-~~LAr~g~~~~qVVGVDISeemLe~ArkrLsa~la~~~~~l~Pr~~~~nVtf~qGDa 785 (952)
.++...++.+|||||||+|.++ ..+++..+ .+|+|||+|++|++.|++++... +..++++.++|+
T Consensus 116 ~la~l~~g~rVLDIGcG~G~~ta~~lA~~~g--a~V~gIDis~~~l~~Ar~~~~~~------------gl~~v~~v~gDa 181 (298)
T 3fpf_A 116 ALGRFRRGERAVFIGGGPLPLTGILLSHVYG--MRVNVVEIEPDIAELSRKVIEGL------------GVDGVNVITGDE 181 (298)
T ss_dssp HHTTCCTTCEEEEECCCSSCHHHHHHHHTTC--CEEEEEESSHHHHHHHHHHHHHH------------TCCSEEEEESCG
T ss_pred HHcCCCCcCEEEEECCCccHHHHHHHHHccC--CEEEEEECCHHHHHHHHHHHHhc------------CCCCeEEEECch
Confidence 3456678899999999999776 44555432 79999999999999999876531 225899999999
Q ss_pred cccCCCCCCccEEEEccccccCChhHHHHHHHHHHHccCCC-EEEEEec
Q 002218 786 TVFDSRLHGFDIGTCLEVIEHMEEDEASQFGNIVLSSFRPR-ILIVSTP 833 (952)
Q Consensus 786 ~dLpf~d~sFDVVVcieVIEHL~dD~l~~L~eeI~RvLKPG-~LIISTP 833 (952)
.+++ +++||+|++... ++ +.. .+.+++.++|||| .+++...
T Consensus 182 ~~l~--d~~FDvV~~~a~---~~-d~~-~~l~el~r~LkPGG~Lvv~~~ 223 (298)
T 3fpf_A 182 TVID--GLEFDVLMVAAL---AE-PKR-RVFRNIHRYVDTETRIIYRTY 223 (298)
T ss_dssp GGGG--GCCCSEEEECTT---CS-CHH-HHHHHHHHHCCTTCEEEEEEC
T ss_pred hhCC--CCCcCEEEECCC---cc-CHH-HHHHHHHHHcCCCcEEEEEcC
Confidence 9876 689999998654 23 443 4446799999999 7766554
No 126
>3dmg_A Probable ribosomal RNA small subunit methyltransf; monomethyltranserase, 16S rRNA methyltransferase, N2 G1207 methyltransferase; HET: SAH; 1.55A {Thermus thermophilus} PDB: 3dmf_A* 3dmh_A* 2zul_A* 2zwv_A*
Probab=99.18 E-value=1.8e-10 Score=127.85 Aligned_cols=116 Identities=21% Similarity=0.293 Sum_probs=91.5
Q ss_pred CCCCEEEEEcCccchHHHHHhcCCCCCceEEEEeCChHHHHHHHHHHhhhhhcccccCCCCCCCccEEEEEcCccccCCC
Q 002218 712 SCATTLVDFGCGSGSLLDSLLDYPTALEKIVGVDISQKSLSRAAKIIHSKLSKKLDAAVPCTDVKSAVLFDGSITVFDSR 791 (952)
Q Consensus 712 ~k~krVLDIGCGeG~ll~~LAr~g~~~~qVVGVDISeemLe~ArkrLsa~la~~~~~l~Pr~~~~nVtf~qGDa~dLpf~ 791 (952)
.++.+|||+|||+|.++..+++.+ .+|+|||+|+.+++.|++++... + .+++++++|+.+....
T Consensus 232 ~~~~~VLDlGcG~G~~~~~la~~g---~~V~gvDis~~al~~A~~n~~~~------------~-~~v~~~~~D~~~~~~~ 295 (381)
T 3dmg_A 232 VRGRQVLDLGAGYGALTLPLARMG---AEVVGVEDDLASVLSLQKGLEAN------------A-LKAQALHSDVDEALTE 295 (381)
T ss_dssp TTTCEEEEETCTTSTTHHHHHHTT---CEEEEEESBHHHHHHHHHHHHHT------------T-CCCEEEECSTTTTSCT
T ss_pred CCCCEEEEEeeeCCHHHHHHHHcC---CEEEEEECCHHHHHHHHHHHHHc------------C-CCeEEEEcchhhcccc
Confidence 367899999999999999999986 79999999999999999876531 2 2489999999988776
Q ss_pred CCCccEEEEcccccc---CChhHHHHHHHHHHHccCCC-EEEEEe-cCCchhHHHHh
Q 002218 792 LHGFDIGTCLEVIEH---MEEDEASQFGNIVLSSFRPR-ILIVST-PNYEYNAILQK 843 (952)
Q Consensus 792 d~sFDVVVcieVIEH---L~dD~l~~L~eeI~RvLKPG-~LIIST-PN~efN~lf~~ 843 (952)
++.||+|++...++| ...+....+.+++.++|||| .+++.+ +...+...+..
T Consensus 296 ~~~fD~Ii~npp~~~~~~~~~~~~~~~l~~~~~~LkpGG~l~iv~n~~l~~~~~l~~ 352 (381)
T 3dmg_A 296 EARFDIIVTNPPFHVGGAVILDVAQAFVNVAAARLRPGGVFFLVSNPFLKYEPLLEE 352 (381)
T ss_dssp TCCEEEEEECCCCCTTCSSCCHHHHHHHHHHHHHEEEEEEEEEEECTTSCHHHHHHH
T ss_pred CCCeEEEEECCchhhcccccHHHHHHHHHHHHHhcCcCcEEEEEEcCCCChHHHHHH
Confidence 789999999999888 33355566677899999998 555544 34444444443
No 127
>3duw_A OMT, O-methyltransferase, putative; alternating of alpha and beta with complex SAH; HET: SAH; 1.20A {Bacillus cereus} PDB: 3dul_A*
Probab=99.18 E-value=2.6e-10 Score=114.24 Aligned_cols=119 Identities=13% Similarity=0.041 Sum_probs=85.9
Q ss_pred HHHHHHHHHHhhcCCCCEEEEEcCccchHHHHHhcCCCCCceEEEEeCChHHHHHHHHHHhhhhhcccccCCCCCCCccE
Q 002218 699 KQRVEYALQHIKESCATTLVDFGCGSGSLLDSLLDYPTALEKIVGVDISQKSLSRAAKIIHSKLSKKLDAAVPCTDVKSA 778 (952)
Q Consensus 699 ~QR~efVldlL~~~k~krVLDIGCGeG~ll~~LAr~g~~~~qVVGVDISeemLe~ArkrLsa~la~~~~~l~Pr~~~~nV 778 (952)
+....++..++...++.+|||||||+|..+..+++..++..+|+|+|+++.+++.|++++... ....++
T Consensus 44 ~~~~~~l~~l~~~~~~~~vLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~-----------~~~~~v 112 (223)
T 3duw_A 44 PTQGKFLQLLVQIQGARNILEIGTLGGYSTIWLARGLSSGGRVVTLEASEKHADIARSNIERA-----------NLNDRV 112 (223)
T ss_dssp HHHHHHHHHHHHHHTCSEEEEECCTTSHHHHHHHTTCCSSCEEEEEESCHHHHHHHHHHHHHT-----------TCTTTE
T ss_pred HHHHHHHHHHHHhhCCCEEEEecCCccHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHc-----------CCCCcE
Confidence 333344544545567899999999999999999987422479999999999999999877531 122369
Q ss_pred EEEEcCccccCCC-----CCCccEEEEccccccCChhHHHHHHHHHHHccCCC-EEEEEec
Q 002218 779 VLFDGSITVFDSR-----LHGFDIGTCLEVIEHMEEDEASQFGNIVLSSFRPR-ILIVSTP 833 (952)
Q Consensus 779 tf~qGDa~dLpf~-----d~sFDVVVcieVIEHL~dD~l~~L~eeI~RvLKPG-~LIISTP 833 (952)
+++++|+.+.... ...||+|++....++. ..+.+.+.++|+|| .+++..+
T Consensus 113 ~~~~~d~~~~~~~~~~~~~~~fD~v~~d~~~~~~-----~~~l~~~~~~L~pgG~lv~~~~ 168 (223)
T 3duw_A 113 EVRTGLALDSLQQIENEKYEPFDFIFIDADKQNN-----PAYFEWALKLSRPGTVIIGDNV 168 (223)
T ss_dssp EEEESCHHHHHHHHHHTTCCCCSEEEECSCGGGH-----HHHHHHHHHTCCTTCEEEEESC
T ss_pred EEEEcCHHHHHHHHHhcCCCCcCEEEEcCCcHHH-----HHHHHHHHHhcCCCcEEEEeCC
Confidence 9999999764221 2579999986553322 34556799999999 6666544
No 128
>1i1n_A Protein-L-isoaspartate O-methyltransferase; S-adenosyl homocysteine, protein repair; HET: SAH; 1.50A {Homo sapiens} SCOP: c.66.1.7 PDB: 1kr5_A*
Probab=99.18 E-value=1e-10 Score=117.40 Aligned_cols=117 Identities=15% Similarity=0.173 Sum_probs=88.2
Q ss_pred HHHHHhh--cCCCCEEEEEcCccchHHHHHhcCCCCCceEEEEeCChHHHHHHHHHHhhhhhcccccCCCCCCCccEEEE
Q 002218 704 YALQHIK--ESCATTLVDFGCGSGSLLDSLLDYPTALEKIVGVDISQKSLSRAAKIIHSKLSKKLDAAVPCTDVKSAVLF 781 (952)
Q Consensus 704 fVldlL~--~~k~krVLDIGCGeG~ll~~LAr~g~~~~qVVGVDISeemLe~ArkrLsa~la~~~~~l~Pr~~~~nVtf~ 781 (952)
.+.+.+. ..++.+|||+|||+|.++..+++..++..+|+|+|+++.+++.|++++...... .....++++.
T Consensus 66 ~~l~~l~~~~~~~~~vLDiG~G~G~~~~~la~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~-------~~~~~~v~~~ 138 (226)
T 1i1n_A 66 YALELLFDQLHEGAKALDVGSGSGILTACFARMVGCTGKVIGIDHIKELVDDSVNNVRKDDPT-------LLSSGRVQLV 138 (226)
T ss_dssp HHHHHTTTTSCTTCEEEEETCTTSHHHHHHHHHHCTTCEEEEEESCHHHHHHHHHHHHHHCTH-------HHHTSSEEEE
T ss_pred HHHHHHHhhCCCCCEEEEEcCCcCHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHhhccc-------ccCCCcEEEE
Confidence 3444443 446789999999999999999876323369999999999999998876531000 0012479999
Q ss_pred EcCccccCCCCCCccEEEEccccccCChhHHHHHHHHHHHccCCC-EEEEEecCC
Q 002218 782 DGSITVFDSRLHGFDIGTCLEVIEHMEEDEASQFGNIVLSSFRPR-ILIVSTPNY 835 (952)
Q Consensus 782 qGDa~dLpf~d~sFDVVVcieVIEHL~dD~l~~L~eeI~RvLKPG-~LIISTPN~ 835 (952)
++|+.........||+|++...++|+. +++.++|||| .++++++..
T Consensus 139 ~~d~~~~~~~~~~fD~i~~~~~~~~~~--------~~~~~~LkpgG~lv~~~~~~ 185 (226)
T 1i1n_A 139 VGDGRMGYAEEAPYDAIHVGAAAPVVP--------QALIDQLKPGGRLILPVGPA 185 (226)
T ss_dssp ESCGGGCCGGGCCEEEEEECSBBSSCC--------HHHHHTEEEEEEEEEEESCT
T ss_pred ECCcccCcccCCCcCEEEECCchHHHH--------HHHHHhcCCCcEEEEEEecC
Confidence 999987665567899999999999887 3588999999 777777643
No 129
>2hnk_A SAM-dependent O-methyltransferase; modified rossman fold; HET: SAH; 2.30A {Leptospira interrogans}
Probab=99.17 E-value=1.2e-10 Score=118.84 Aligned_cols=161 Identities=15% Similarity=0.072 Sum_probs=107.0
Q ss_pred HHHHHHHHHHHhhcCCCCEEEEEcCccchHHHHHhcCCCCCceEEEEeCChHHHHHHHHHHhhhhhcccccCCCCCCCcc
Q 002218 698 SKQRVEYALQHIKESCATTLVDFGCGSGSLLDSLLDYPTALEKIVGVDISQKSLSRAAKIIHSKLSKKLDAAVPCTDVKS 777 (952)
Q Consensus 698 ~~QR~efVldlL~~~k~krVLDIGCGeG~ll~~LAr~g~~~~qVVGVDISeemLe~ArkrLsa~la~~~~~l~Pr~~~~n 777 (952)
.+....++...+...++.+|||||||+|.++..+++..++..+|+|+|+++.+++.|++++... ....+
T Consensus 45 ~~~~~~~l~~l~~~~~~~~VLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~-----------g~~~~ 113 (239)
T 2hnk_A 45 SPEEGQFLNILTKISGAKRIIEIGTFTGYSSLCFASALPEDGKILCCDVSEEWTNVARKYWKEN-----------GLENK 113 (239)
T ss_dssp CHHHHHHHHHHHHHHTCSEEEEECCTTCHHHHHHHHHSCTTCEEEEEESCHHHHHHHHHHHHHT-----------TCGGG
T ss_pred CHHHHHHHHHHHHhhCcCEEEEEeCCCCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHc-----------CCCCC
Confidence 3344455555555567889999999999999999987422479999999999999999876531 11235
Q ss_pred EEEEEcCcccc-C--------------CC-C-CCccEEEEccccccCChhHHHHHHHHHHHccCCC-EEEEEecCCchhH
Q 002218 778 AVLFDGSITVF-D--------------SR-L-HGFDIGTCLEVIEHMEEDEASQFGNIVLSSFRPR-ILIVSTPNYEYNA 839 (952)
Q Consensus 778 Vtf~qGDa~dL-p--------------f~-d-~sFDVVVcieVIEHL~dD~l~~L~eeI~RvLKPG-~LIISTPN~efN~ 839 (952)
+++.++|+.+. + +. . +.||+|++....+++. .+.+.+.++|+|| .+++.+... ..
T Consensus 114 v~~~~~d~~~~~~~~~~~~~~~~~~~~f~~~~~~fD~I~~~~~~~~~~-----~~l~~~~~~L~pgG~lv~~~~~~--~g 186 (239)
T 2hnk_A 114 IFLKLGSALETLQVLIDSKSAPSWASDFAFGPSSIDLFFLDADKENYP-----NYYPLILKLLKPGGLLIADNVLW--DG 186 (239)
T ss_dssp EEEEESCHHHHHHHHHHCSSCCGGGTTTCCSTTCEEEEEECSCGGGHH-----HHHHHHHHHEEEEEEEEEECSSG--GG
T ss_pred EEEEECCHHHHHHHHHhhcccccccccccCCCCCcCEEEEeCCHHHHH-----HHHHHHHHHcCCCeEEEEEcccc--CC
Confidence 99999998663 2 11 2 7899999876544433 4456799999999 666654331 11
Q ss_pred HHHhhccCccCCCCcchhhhccccccCCCCccccCHHHHHHHHHHHHHHcCcEEEEEeecC
Q 002218 840 ILQKSSSTIQEDDPDEKTQLQSCKFRNHDHKFEWTRDQFNCWATELAARHNYSVEFSGVGG 900 (952)
Q Consensus 840 lf~~L~~~ta~eYPde~~g~~~~~fRh~DHkFEWTReEFqsWae~La~q~GYsVefsGVG~ 900 (952)
. ...+.+ .......++.+.+.+.....+.+.+..+|+
T Consensus 187 ~-----------------------~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~ 223 (239)
T 2hnk_A 187 S-----------------------VADLSH-QEPSTVGIRKFNELVYNDSLVDVSLVPIAD 223 (239)
T ss_dssp G-----------------------GGCTTC-CCHHHHHHHHHHHHHHHCTTEEEEEECSTT
T ss_pred c-----------------------ccCccc-cchHHHHHHHHHHHHhhCCCeEEEEEEcCC
Confidence 0 000111 112334455555566666688988888875
No 130
>2fyt_A Protein arginine N-methyltransferase 3; structural genomics, structural genomics consortium, SGC; HET: SAH; 2.00A {Homo sapiens} SCOP: c.66.1.6 PDB: 3smq_A* 1f3l_A*
Probab=99.17 E-value=1.8e-10 Score=125.18 Aligned_cols=112 Identities=18% Similarity=0.155 Sum_probs=85.8
Q ss_pred HHHHHHhhcCCCCEEEEEcCccchHHHHHhcCCCCCceEEEEeCChHHHHHHHHHHhhhhhcccccCCCCCCCccEEEEE
Q 002218 703 EYALQHIKESCATTLVDFGCGSGSLLDSLLDYPTALEKIVGVDISQKSLSRAAKIIHSKLSKKLDAAVPCTDVKSAVLFD 782 (952)
Q Consensus 703 efVldlL~~~k~krVLDIGCGeG~ll~~LAr~g~~~~qVVGVDISeemLe~ArkrLsa~la~~~~~l~Pr~~~~nVtf~q 782 (952)
+++.+.+...++.+|||||||+|.++..+++.+. .+|+|+|+|+ |++.|++++... ....++++++
T Consensus 54 ~~i~~~~~~~~~~~VLDiGcGtG~ls~~la~~g~--~~v~gvD~s~-~~~~a~~~~~~~-----------~~~~~i~~~~ 119 (340)
T 2fyt_A 54 DFIYQNPHIFKDKVVLDVGCGTGILSMFAAKAGA--KKVLGVDQSE-ILYQAMDIIRLN-----------KLEDTITLIK 119 (340)
T ss_dssp HHHHHCGGGTTTCEEEEETCTTSHHHHHHHHTTC--SEEEEEESST-HHHHHHHHHHHT-----------TCTTTEEEEE
T ss_pred HHHHhhhhhcCCCEEEEeeccCcHHHHHHHHcCC--CEEEEEChHH-HHHHHHHHHHHc-----------CCCCcEEEEE
Confidence 4455555556788999999999999999998862 5999999996 999998876431 1225899999
Q ss_pred cCccccCCCCCCccEEEEccc---cccCChhHHHHHHHHHHHccCCCEEEE
Q 002218 783 GSITVFDSRLHGFDIGTCLEV---IEHMEEDEASQFGNIVLSSFRPRILIV 830 (952)
Q Consensus 783 GDa~dLpf~d~sFDVVVcieV---IEHL~dD~l~~L~eeI~RvLKPG~LII 830 (952)
+|+.+++++.++||+|++..+ +.|.. ....+.+++.++||||..++
T Consensus 120 ~d~~~~~~~~~~~D~Ivs~~~~~~l~~~~--~~~~~l~~~~~~LkpgG~li 168 (340)
T 2fyt_A 120 GKIEEVHLPVEKVDVIISEWMGYFLLFES--MLDSVLYAKNKYLAKGGSVY 168 (340)
T ss_dssp SCTTTSCCSCSCEEEEEECCCBTTBTTTC--HHHHHHHHHHHHEEEEEEEE
T ss_pred eeHHHhcCCCCcEEEEEEcCchhhccCHH--HHHHHHHHHHhhcCCCcEEE
Confidence 999998887789999999764 44433 33445567999999994333
No 131
>2fpo_A Methylase YHHF; structural genomics, putative methyltransferase, PSI, protei structure initiative; HET: MSE; 2.05A {Escherichia coli} SCOP: c.66.1.46
Probab=99.17 E-value=6.3e-11 Score=118.71 Aligned_cols=117 Identities=10% Similarity=0.024 Sum_probs=84.4
Q ss_pred HHHHHHHHhhc-CCCCEEEEEcCccchHHHHHhcCCCCCceEEEEeCChHHHHHHHHHHhhhhhcccccCCCCCCCccEE
Q 002218 701 RVEYALQHIKE-SCATTLVDFGCGSGSLLDSLLDYPTALEKIVGVDISQKSLSRAAKIIHSKLSKKLDAAVPCTDVKSAV 779 (952)
Q Consensus 701 R~efVldlL~~-~k~krVLDIGCGeG~ll~~LAr~g~~~~qVVGVDISeemLe~ArkrLsa~la~~~~~l~Pr~~~~nVt 779 (952)
-++.+.+.+.. .++.+|||+|||+|.++..+++.+. .+|+|+|+|+.|++.|++++.. .+..+++
T Consensus 41 ~~~~l~~~l~~~~~~~~vLDlgcG~G~~~~~l~~~~~--~~V~~vD~s~~~l~~a~~~~~~------------~~~~~v~ 106 (202)
T 2fpo_A 41 VRETLFNWLAPVIVDAQCLDCFAGSGALGLEALSRYA--AGATLIEMDRAVSQQLIKNLAT------------LKAGNAR 106 (202)
T ss_dssp HHHHHHHHHHHHHTTCEEEETTCTTCHHHHHHHHTTC--SEEEEECSCHHHHHHHHHHHHH------------TTCCSEE
T ss_pred HHHHHHHHHHhhcCCCeEEEeCCCcCHHHHHHHhcCC--CEEEEEECCHHHHHHHHHHHHH------------cCCCcEE
Confidence 33445555544 2678999999999999998777662 5999999999999999987653 1235899
Q ss_pred EEEcCccc-cCCCCCCccEEEEccccccCChhHHHHHHHHHHH--ccCCC-EEEEEecC
Q 002218 780 LFDGSITV-FDSRLHGFDIGTCLEVIEHMEEDEASQFGNIVLS--SFRPR-ILIVSTPN 834 (952)
Q Consensus 780 f~qGDa~d-Lpf~d~sFDVVVcieVIEHL~dD~l~~L~eeI~R--vLKPG-~LIISTPN 834 (952)
++++|+.+ ++.....||+|++...+ |.. .. ..+.+.+.+ +|+|| .+++.+..
T Consensus 107 ~~~~D~~~~~~~~~~~fD~V~~~~p~-~~~-~~-~~~l~~l~~~~~L~pgG~l~i~~~~ 162 (202)
T 2fpo_A 107 VVNSNAMSFLAQKGTPHNIVFVDPPF-RRG-LL-EETINLLEDNGWLADEALIYVESEV 162 (202)
T ss_dssp EECSCHHHHHSSCCCCEEEEEECCSS-STT-TH-HHHHHHHHHTTCEEEEEEEEEEEEG
T ss_pred EEECCHHHHHhhcCCCCCEEEECCCC-CCC-cH-HHHHHHHHhcCccCCCcEEEEEECC
Confidence 99999987 45556789999997663 332 22 233345654 59998 77776654
No 132
>3dr5_A Putative O-methyltransferase; Q8NRD3, CGL1119, PF01596, CGR117, NESG, structural genomics, PSI-2, protein structure initiative; 2.25A {Corynebacterium glutamicum}
Probab=99.17 E-value=1.1e-10 Score=119.63 Aligned_cols=121 Identities=7% Similarity=-0.013 Sum_probs=85.6
Q ss_pred CchhHHHHHHHHHHHhhcCCCC---EEEEEcCccchHHHHHhcCCCCCceEEEEeCChHHHHHHHHHHhhhhhcccccCC
Q 002218 694 SPPLSKQRVEYALQHIKESCAT---TLVDFGCGSGSLLDSLLDYPTALEKIVGVDISQKSLSRAAKIIHSKLSKKLDAAV 770 (952)
Q Consensus 694 ~PPL~~QR~efVldlL~~~k~k---rVLDIGCGeG~ll~~LAr~g~~~~qVVGVDISeemLe~ArkrLsa~la~~~~~l~ 770 (952)
.|...+..-+++..++...+++ +|||||||+|..+..|++..++..+|+|||+++++++.|++++...
T Consensus 34 ~p~i~~~~~~~l~~l~~~~~~~~~~~vLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~--------- 104 (221)
T 3dr5_A 34 LPAPDEMTGQLLTTLAATTNGNGSTGAIAITPAAGLVGLYILNGLADNTTLTCIDPESEHQRQAKALFREA--------- 104 (221)
T ss_dssp CCCCCHHHHHHHHHHHHHSCCTTCCEEEEESTTHHHHHHHHHHHSCTTSEEEEECSCHHHHHHHHHHHHHT---------
T ss_pred CCCCCHHHHHHHHHHHHhhCCCCCCCEEEEcCCchHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHc---------
Confidence 3334444444444444444445 9999999999999999875323479999999999999999887531
Q ss_pred CCCCC-ccEEEEEcCccccCC--CCCCccEEEEccccccCChhHHHHHHHHHHHccCCC-EEEE
Q 002218 771 PCTDV-KSAVLFDGSITVFDS--RLHGFDIGTCLEVIEHMEEDEASQFGNIVLSSFRPR-ILIV 830 (952)
Q Consensus 771 Pr~~~-~nVtf~qGDa~dLpf--~d~sFDVVVcieVIEHL~dD~l~~L~eeI~RvLKPG-~LII 830 (952)
+.. .+++++++|+.+... ..++||+|++.....+. ..+.+.+.++|||| .+++
T Consensus 105 --g~~~~~i~~~~gda~~~l~~~~~~~fD~V~~d~~~~~~-----~~~l~~~~~~LkpGG~lv~ 161 (221)
T 3dr5_A 105 --GYSPSRVRFLLSRPLDVMSRLANDSYQLVFGQVSPMDL-----KALVDAAWPLLRRGGALVL 161 (221)
T ss_dssp --TCCGGGEEEECSCHHHHGGGSCTTCEEEEEECCCTTTH-----HHHHHHHHHHEEEEEEEEE
T ss_pred --CCCcCcEEEEEcCHHHHHHHhcCCCcCeEEEcCcHHHH-----HHHHHHHHHHcCCCcEEEE
Confidence 112 479999999977532 25789999886543332 34556799999999 4444
No 133
>3u81_A Catechol O-methyltransferase; neurotransmitter degradation, transferase transferase inhibitor complex; HET: SAH; 1.13A {Rattus norvegicus} SCOP: c.66.1.1 PDB: 3nwe_A* 3oe5_A* 3ozr_A* 3oe4_A* 3ozt_A* 3ozs_A* 3r6t_A* 3hvi_A* 1jr4_A* 1vid_A* 1h1d_A* 2cl5_A* 3hvh_A* 3hvj_A* 3hvk_A* 3nw9_A* 3nwb_A* 3s68_A* 2zlb_A 2zth_A* ...
Probab=99.16 E-value=1.5e-10 Score=116.80 Aligned_cols=122 Identities=7% Similarity=0.100 Sum_probs=89.2
Q ss_pred hhHHHHHHHHHHHhhcCCCCEEEEEcCccchHHHHHhcCCCCCceEEEEeCChHHHHHHHHHHhhhhhcccccCCCCCCC
Q 002218 696 PLSKQRVEYALQHIKESCATTLVDFGCGSGSLLDSLLDYPTALEKIVGVDISQKSLSRAAKIIHSKLSKKLDAAVPCTDV 775 (952)
Q Consensus 696 PL~~QR~efVldlL~~~k~krVLDIGCGeG~ll~~LAr~g~~~~qVVGVDISeemLe~ArkrLsa~la~~~~~l~Pr~~~ 775 (952)
.+.+...+++..++...++.+|||||||+|..+..+++..++..+|+|||+++.+++.|++++... ...
T Consensus 41 ~~~~~~~~~l~~l~~~~~~~~vLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~-----------~~~ 109 (221)
T 3u81_A 41 NVGDAKGQIMDAVIREYSPSLVLELGAYCGYSAVRMARLLQPGARLLTMEINPDCAAITQQMLNFA-----------GLQ 109 (221)
T ss_dssp GCCHHHHHHHHHHHHHHCCSEEEEECCTTSHHHHHHHTTSCTTCEEEEEESCHHHHHHHHHHHHHH-----------TCG
T ss_pred ccCHHHHHHHHHHHHhcCCCEEEEECCCCCHHHHHHHHhCCCCCEEEEEeCChHHHHHHHHHHHHc-----------CCC
Confidence 444445556666666667899999999999999999985323479999999999999999877532 122
Q ss_pred ccEEEEEcCcccc-CCCC-----CCccEEEEccccccCChhHHHHHHHHHHHccCCC-EEEEE
Q 002218 776 KSAVLFDGSITVF-DSRL-----HGFDIGTCLEVIEHMEEDEASQFGNIVLSSFRPR-ILIVS 831 (952)
Q Consensus 776 ~nVtf~qGDa~dL-pf~d-----~sFDVVVcieVIEHL~dD~l~~L~eeI~RvLKPG-~LIIS 831 (952)
.+++++++|+.+. +... +.||+|++....+|.. +....+ +.+ ++|||| .+++.
T Consensus 110 ~~v~~~~~d~~~~l~~~~~~~~~~~fD~V~~d~~~~~~~-~~~~~~-~~~-~~LkpgG~lv~~ 169 (221)
T 3u81_A 110 DKVTILNGASQDLIPQLKKKYDVDTLDMVFLDHWKDRYL-PDTLLL-EKC-GLLRKGTVLLAD 169 (221)
T ss_dssp GGEEEEESCHHHHGGGTTTTSCCCCCSEEEECSCGGGHH-HHHHHH-HHT-TCCCTTCEEEES
T ss_pred CceEEEECCHHHHHHHHHHhcCCCceEEEEEcCCcccch-HHHHHH-Hhc-cccCCCeEEEEe
Confidence 3699999998663 2222 6899999988777765 333343 345 999999 66553
No 134
>3lpm_A Putative methyltransferase; structural genomics, protein structure initiative, NEW YORK structural genomix research consortium, nysgxrc; 2.40A {Listeria monocytogenes}
Probab=99.15 E-value=2.2e-10 Score=118.56 Aligned_cols=119 Identities=13% Similarity=0.055 Sum_probs=87.1
Q ss_pred HHHHhhcC-CCCEEEEEcCccchHHHHHhcCCCCCceEEEEeCChHHHHHHHHHHhhhhhcccccCCCCCCCccEEEEEc
Q 002218 705 ALQHIKES-CATTLVDFGCGSGSLLDSLLDYPTALEKIVGVDISQKSLSRAAKIIHSKLSKKLDAAVPCTDVKSAVLFDG 783 (952)
Q Consensus 705 VldlL~~~-k~krVLDIGCGeG~ll~~LAr~g~~~~qVVGVDISeemLe~ArkrLsa~la~~~~~l~Pr~~~~nVtf~qG 783 (952)
+...+... ++.+|||+|||+|.++..+++.+. .+|+|+|+++.+++.|++++... ....+++++++
T Consensus 40 l~~~~~~~~~~~~vLDlG~G~G~~~~~la~~~~--~~v~gvDi~~~~~~~a~~n~~~~-----------~~~~~v~~~~~ 106 (259)
T 3lpm_A 40 LAKFSYLPIRKGKIIDLCSGNGIIPLLLSTRTK--AKIVGVEIQERLADMAKRSVAYN-----------QLEDQIEIIEY 106 (259)
T ss_dssp HHHHCCCCSSCCEEEETTCTTTHHHHHHHTTCC--CEEEEECCSHHHHHHHHHHHHHT-----------TCTTTEEEECS
T ss_pred HHHHhcCCCCCCEEEEcCCchhHHHHHHHHhcC--CcEEEEECCHHHHHHHHHHHHHC-----------CCcccEEEEEC
Confidence 44445555 688999999999999999999873 49999999999999999876531 12236999999
Q ss_pred CccccCC--CCCCccEEEEccccccC------------------ChhHHHHHHHHHHHccCCC-EEEEEecCCc
Q 002218 784 SITVFDS--RLHGFDIGTCLEVIEHM------------------EEDEASQFGNIVLSSFRPR-ILIVSTPNYE 836 (952)
Q Consensus 784 Da~dLpf--~d~sFDVVVcieVIEHL------------------~dD~l~~L~eeI~RvLKPG-~LIISTPN~e 836 (952)
|+.+++. ..++||+|++.-.+.+. .......+.+.+.++|||| .+++..+...
T Consensus 107 D~~~~~~~~~~~~fD~Ii~npPy~~~~~~~~~~~~~~~~~a~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~ 180 (259)
T 3lpm_A 107 DLKKITDLIPKERADIVTCNPPYFATPDTSLKNTNEHFRIARHEVMCTLEDTIRVAASLLKQGGKANFVHRPER 180 (259)
T ss_dssp CGGGGGGTSCTTCEEEEEECCCC-----------------------HHHHHHHHHHHHHEEEEEEEEEEECTTT
T ss_pred cHHHhhhhhccCCccEEEECCCCCCCccccCCCCchHHHhhhccccCCHHHHHHHHHHHccCCcEEEEEEcHHH
Confidence 9998763 46789999996433222 1123456677899999998 6666555433
No 135
>3tfw_A Putative O-methyltransferase; PSI-biology, nysgrc, structural genomics, NEW YORK structura genomics research consortium; 1.88A {Klebsiella pneumoniae subsp}
Probab=99.15 E-value=1.1e-09 Score=113.13 Aligned_cols=117 Identities=12% Similarity=0.084 Sum_probs=85.2
Q ss_pred HHHHHHHHhhcCCCCEEEEEcCccchHHHHHhcCCCCCceEEEEeCChHHHHHHHHHHhhhhhcccccCCCCCCCccEEE
Q 002218 701 RVEYALQHIKESCATTLVDFGCGSGSLLDSLLDYPTALEKIVGVDISQKSLSRAAKIIHSKLSKKLDAAVPCTDVKSAVL 780 (952)
Q Consensus 701 R~efVldlL~~~k~krVLDIGCGeG~ll~~LAr~g~~~~qVVGVDISeemLe~ArkrLsa~la~~~~~l~Pr~~~~nVtf 780 (952)
...++..++...++.+|||||||+|..+..|++..++..+|+|+|+++.+++.|++++... ....++++
T Consensus 51 ~~~~l~~l~~~~~~~~VLdiG~G~G~~~~~la~~~~~~~~v~~vD~s~~~~~~a~~~~~~~-----------g~~~~v~~ 119 (248)
T 3tfw_A 51 QGQFLALLVRLTQAKRILEIGTLGGYSTIWMARELPADGQLLTLEADAHHAQVARENLQLA-----------GVDQRVTL 119 (248)
T ss_dssp HHHHHHHHHHHHTCSEEEEECCTTSHHHHHHHTTSCTTCEEEEEECCHHHHHHHHHHHHHT-----------TCTTTEEE
T ss_pred HHHHHHHHHhhcCCCEEEEecCCchHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHc-----------CCCCcEEE
Confidence 3344444445557899999999999999999987422479999999999999999887531 12247999
Q ss_pred EEcCccc-cCCC--CCCccEEEEccccccCChhHHHHHHHHHHHccCCC-EEEEEec
Q 002218 781 FDGSITV-FDSR--LHGFDIGTCLEVIEHMEEDEASQFGNIVLSSFRPR-ILIVSTP 833 (952)
Q Consensus 781 ~qGDa~d-Lpf~--d~sFDVVVcieVIEHL~dD~l~~L~eeI~RvLKPG-~LIISTP 833 (952)
.++|+.+ ++.. .+.||+|++..... ....+.+.+.++|||| .+++...
T Consensus 120 ~~~d~~~~l~~~~~~~~fD~V~~d~~~~-----~~~~~l~~~~~~LkpGG~lv~~~~ 171 (248)
T 3tfw_A 120 REGPALQSLESLGECPAFDLIFIDADKP-----NNPHYLRWALRYSRPGTLIIGDNV 171 (248)
T ss_dssp EESCHHHHHHTCCSCCCCSEEEECSCGG-----GHHHHHHHHHHTCCTTCEEEEECC
T ss_pred EEcCHHHHHHhcCCCCCeEEEEECCchH-----HHHHHHHHHHHhcCCCeEEEEeCC
Confidence 9999977 3332 34899999855322 2234556799999999 6666544
No 136
>3lst_A CALO1 methyltransferase; calicheamicin, enediyne, SAH, STRU genomics, PSI-2, protein structure initiative; HET: SAH; 2.40A {Micromonospora echinospora}
Probab=99.15 E-value=1.1e-10 Score=126.13 Aligned_cols=111 Identities=11% Similarity=0.094 Sum_probs=82.1
Q ss_pred HHHHhhcCCCCEEEEEcCccchHHHHHhcCCCCCceEEEEeCChHHHHHHHHHHhhhhhcccccCCCCCCCccEEEEEcC
Q 002218 705 ALQHIKESCATTLVDFGCGSGSLLDSLLDYPTALEKIVGVDISQKSLSRAAKIIHSKLSKKLDAAVPCTDVKSAVLFDGS 784 (952)
Q Consensus 705 VldlL~~~k~krVLDIGCGeG~ll~~LAr~g~~~~qVVGVDISeemLe~ArkrLsa~la~~~~~l~Pr~~~~nVtf~qGD 784 (952)
+.+.+...+..+|||||||+|.++..+++.. +..+++++|+ +.++. +++... .....++++..+|
T Consensus 176 ~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~-p~~~~~~~D~-~~~~~--~~~~~~-----------~~~~~~v~~~~~d 240 (348)
T 3lst_A 176 LARAGDFPATGTVADVGGGRGGFLLTVLREH-PGLQGVLLDR-AEVVA--RHRLDA-----------PDVAGRWKVVEGD 240 (348)
T ss_dssp HHHHSCCCSSEEEEEETCTTSHHHHHHHHHC-TTEEEEEEEC-HHHHT--TCCCCC-----------GGGTTSEEEEECC
T ss_pred HHHhCCccCCceEEEECCccCHHHHHHHHHC-CCCEEEEecC-HHHhh--cccccc-----------cCCCCCeEEEecC
Confidence 4444444567899999999999999998865 3478999999 44444 211110 1123479999999
Q ss_pred ccccCCCCCCccEEEEccccccCChhHHHHHHHHHHHccCCC-EEEEEec
Q 002218 785 ITVFDSRLHGFDIGTCLEVIEHMEEDEASQFGNIVLSSFRPR-ILIVSTP 833 (952)
Q Consensus 785 a~dLpf~d~sFDVVVcieVIEHL~dD~l~~L~eeI~RvLKPG-~LIISTP 833 (952)
+.+ +.+ +||+|++..++||+++++...+.+++.++|||| .++|..+
T Consensus 241 ~~~-~~p--~~D~v~~~~vlh~~~d~~~~~~L~~~~~~LkpgG~l~i~e~ 287 (348)
T 3lst_A 241 FLR-EVP--HADVHVLKRILHNWGDEDSVRILTNCRRVMPAHGRVLVIDA 287 (348)
T ss_dssp TTT-CCC--CCSEEEEESCGGGSCHHHHHHHHHHHHHTCCTTCEEEEEEC
T ss_pred CCC-CCC--CCcEEEEehhccCCCHHHHHHHHHHHHHhcCCCCEEEEEEe
Confidence 962 223 899999999999999776667777899999999 7777654
No 137
>1xdz_A Methyltransferase GIDB; MCSG, protein structure initiative, structural genomics, methyltransferase fold, PSI; 1.60A {Bacillus subtilis} SCOP: c.66.1.20
Probab=99.15 E-value=8.8e-11 Score=120.03 Aligned_cols=99 Identities=17% Similarity=0.228 Sum_probs=77.8
Q ss_pred CCCEEEEEcCccchHHHHHhcCCCCCceEEEEeCChHHHHHHHHHHhhhhhcccccCCCCCCCccEEEEEcCccccCCC-
Q 002218 713 CATTLVDFGCGSGSLLDSLLDYPTALEKIVGVDISQKSLSRAAKIIHSKLSKKLDAAVPCTDVKSAVLFDGSITVFDSR- 791 (952)
Q Consensus 713 k~krVLDIGCGeG~ll~~LAr~g~~~~qVVGVDISeemLe~ArkrLsa~la~~~~~l~Pr~~~~nVtf~qGDa~dLpf~- 791 (952)
++.+|||||||+|.++..|+... +..+|+|||+|+.|++.|+++.... +..+++++++|+.++++.
T Consensus 70 ~~~~vLDiG~G~G~~~~~la~~~-~~~~v~~vD~s~~~~~~a~~~~~~~------------~~~~v~~~~~d~~~~~~~~ 136 (240)
T 1xdz_A 70 QVNTICDVGAGAGFPSLPIKICF-PHLHVTIVDSLNKRITFLEKLSEAL------------QLENTTFCHDRAETFGQRK 136 (240)
T ss_dssp GCCEEEEECSSSCTTHHHHHHHC-TTCEEEEEESCHHHHHHHHHHHHHH------------TCSSEEEEESCHHHHTTCT
T ss_pred CCCEEEEecCCCCHHHHHHHHhC-CCCEEEEEeCCHHHHHHHHHHHHHc------------CCCCEEEEeccHHHhcccc
Confidence 57899999999999999998532 2379999999999999998876431 334799999999888753
Q ss_pred --CCCccEEEEccccccCChhHHHHHHHHHHHccCCC-EEEE
Q 002218 792 --LHGFDIGTCLEVIEHMEEDEASQFGNIVLSSFRPR-ILIV 830 (952)
Q Consensus 792 --d~sFDVVVcieVIEHL~dD~l~~L~eeI~RvLKPG-~LII 830 (952)
.+.||+|++..+ . + ...+.+.+.++|+|| .+++
T Consensus 137 ~~~~~fD~V~~~~~----~-~-~~~~l~~~~~~LkpgG~l~~ 172 (240)
T 1xdz_A 137 DVRESYDIVTARAV----A-R-LSVLSELCLPLVKKNGLFVA 172 (240)
T ss_dssp TTTTCEEEEEEECC----S-C-HHHHHHHHGGGEEEEEEEEE
T ss_pred cccCCccEEEEecc----C-C-HHHHHHHHHHhcCCCCEEEE
Confidence 578999999774 2 2 345556799999999 5544
No 138
>3r0q_C Probable protein arginine N-methyltransferase 4.2; arginine methyltransferase, methylation; HET: SAH; 2.61A {Arabidopsis thaliana}
Probab=99.15 E-value=1.4e-10 Score=127.69 Aligned_cols=112 Identities=14% Similarity=0.105 Sum_probs=85.6
Q ss_pred HHHHHhhcCCCCEEEEEcCccchHHHHHhcCCCCCceEEEEeCChHHHHHHHHHHhhhhhcccccCCCCCCCccEEEEEc
Q 002218 704 YALQHIKESCATTLVDFGCGSGSLLDSLLDYPTALEKIVGVDISQKSLSRAAKIIHSKLSKKLDAAVPCTDVKSAVLFDG 783 (952)
Q Consensus 704 fVldlL~~~k~krVLDIGCGeG~ll~~LAr~g~~~~qVVGVDISeemLe~ArkrLsa~la~~~~~l~Pr~~~~nVtf~qG 783 (952)
++.+.+...++++|||||||+|.++..+++.+. .+|+|||+| .|++.|++++... ....+++++++
T Consensus 54 ~i~~~~~~~~~~~VLDlGcGtG~ls~~la~~g~--~~V~gvD~s-~~~~~a~~~~~~~-----------~~~~~v~~~~~ 119 (376)
T 3r0q_C 54 AVFQNKHHFEGKTVLDVGTGSGILAIWSAQAGA--RKVYAVEAT-KMADHARALVKAN-----------NLDHIVEVIEG 119 (376)
T ss_dssp HHHTTTTTTTTCEEEEESCTTTHHHHHHHHTTC--SEEEEEESS-TTHHHHHHHHHHT-----------TCTTTEEEEES
T ss_pred HHHhccccCCCCEEEEeccCcCHHHHHHHhcCC--CEEEEEccH-HHHHHHHHHHHHc-----------CCCCeEEEEEC
Confidence 344444456788999999999999999999872 599999999 9999998876531 12246999999
Q ss_pred CccccCCCCCCccEEEEccccccCCh-hHHHHHHHHHHHccCCC-EEEE
Q 002218 784 SITVFDSRLHGFDIGTCLEVIEHMEE-DEASQFGNIVLSSFRPR-ILIV 830 (952)
Q Consensus 784 Da~dLpf~d~sFDVVVcieVIEHL~d-D~l~~L~eeI~RvLKPG-~LII 830 (952)
|+.+++++ ++||+|++..+.+++.. .....+.+.+.++|||| .+++
T Consensus 120 d~~~~~~~-~~~D~Iv~~~~~~~l~~e~~~~~~l~~~~~~LkpgG~li~ 167 (376)
T 3r0q_C 120 SVEDISLP-EKVDVIISEWMGYFLLRESMFDSVISARDRWLKPTGVMYP 167 (376)
T ss_dssp CGGGCCCS-SCEEEEEECCCBTTBTTTCTHHHHHHHHHHHEEEEEEEES
T ss_pred chhhcCcC-CcceEEEEcChhhcccchHHHHHHHHHHHhhCCCCeEEEE
Confidence 99998876 88999999665555542 23455566789999999 4443
No 139
>2b3t_A Protein methyltransferase HEMK; translation termination, methylation, conformational changes; HET: SAH; 3.10A {Escherichia coli} SCOP: c.66.1.30 PDB: 1t43_A*
Probab=99.15 E-value=2.7e-10 Score=118.91 Aligned_cols=125 Identities=14% Similarity=0.119 Sum_probs=92.7
Q ss_pred hhHHHHHHHHHHHhhcCCCCEEEEEcCccchHHHHHhcCCCCCceEEEEeCChHHHHHHHHHHhhhhhcccccCCCCCCC
Q 002218 696 PLSKQRVEYALQHIKESCATTLVDFGCGSGSLLDSLLDYPTALEKIVGVDISQKSLSRAAKIIHSKLSKKLDAAVPCTDV 775 (952)
Q Consensus 696 PL~~QR~efVldlL~~~k~krVLDIGCGeG~ll~~LAr~g~~~~qVVGVDISeemLe~ArkrLsa~la~~~~~l~Pr~~~ 775 (952)
|.....++.+.+.+. .++.+|||+|||+|.++..+++.. +..+|+|+|+|+.+++.|+++.... +.
T Consensus 93 ~~te~l~~~~l~~~~-~~~~~vLDlG~GsG~~~~~la~~~-~~~~v~~vD~s~~~l~~a~~n~~~~------------~~ 158 (276)
T 2b3t_A 93 PDTECLVEQALARLP-EQPCRILDLGTGTGAIALALASER-PDCEIIAVDRMPDAVSLAQRNAQHL------------AI 158 (276)
T ss_dssp TTHHHHHHHHHHHSC-SSCCEEEEETCTTSHHHHHHHHHC-TTSEEEEECSSHHHHHHHHHHHHHH------------TC
T ss_pred chHHHHHHHHHHhcc-cCCCEEEEecCCccHHHHHHHHhC-CCCEEEEEECCHHHHHHHHHHHHHc------------CC
Confidence 344555566666654 466799999999999999998653 2379999999999999999876531 23
Q ss_pred ccEEEEEcCccccCCCCCCccEEEEc-------------cccccCCh----------hHHHHHHHHHHHccCCC-EEEEE
Q 002218 776 KSAVLFDGSITVFDSRLHGFDIGTCL-------------EVIEHMEE----------DEASQFGNIVLSSFRPR-ILIVS 831 (952)
Q Consensus 776 ~nVtf~qGDa~dLpf~d~sFDVVVci-------------eVIEHL~d----------D~l~~L~eeI~RvLKPG-~LIIS 831 (952)
.++++.++|+.+.. ..+.||+|++. ++++|-+. +....+.+.+.++|+|| .+++.
T Consensus 159 ~~v~~~~~d~~~~~-~~~~fD~Iv~npPy~~~~~~~l~~~v~~~~p~~al~~~~~g~~~~~~~l~~~~~~LkpgG~l~~~ 237 (276)
T 2b3t_A 159 KNIHILQSDWFSAL-AGQQFAMIVSNPPYIDEQDPHLQQGDVRFEPLTALVAADSGMADIVHIIEQSRNALVSGGFLLLE 237 (276)
T ss_dssp CSEEEECCSTTGGG-TTCCEEEEEECCCCBCTTCHHHHSSGGGSSCSTTTBCHHHHTHHHHHHHHHHGGGEEEEEEEEEE
T ss_pred CceEEEEcchhhhc-ccCCccEEEECCCCCCccccccChhhhhcCcHHHHcCCCcHHHHHHHHHHHHHHhcCCCCEEEEE
Confidence 47999999998742 35689999997 56666542 23356667899999999 67776
Q ss_pred ecCC
Q 002218 832 TPNY 835 (952)
Q Consensus 832 TPN~ 835 (952)
.+..
T Consensus 238 ~~~~ 241 (276)
T 2b3t_A 238 HGWQ 241 (276)
T ss_dssp CCSS
T ss_pred ECch
Confidence 5543
No 140
>1yb2_A Hypothetical protein TA0852; structural genomics, methyltransferase, thermoplasma acidoph midwest center for structural genomics, MCSG; 2.01A {Thermoplasma acidophilum} SCOP: c.66.1.13
Probab=99.14 E-value=9e-11 Score=122.69 Aligned_cols=119 Identities=14% Similarity=0.192 Sum_probs=84.7
Q ss_pred hHHHHHHHHHHHhhcCCCCEEEEEcCccchHHHHHhcCCCCCceEEEEeCChHHHHHHHHHHhhhhhcccccCCCCC-CC
Q 002218 697 LSKQRVEYALQHIKESCATTLVDFGCGSGSLLDSLLDYPTALEKIVGVDISQKSLSRAAKIIHSKLSKKLDAAVPCT-DV 775 (952)
Q Consensus 697 L~~QR~efVldlL~~~k~krVLDIGCGeG~ll~~LAr~g~~~~qVVGVDISeemLe~ArkrLsa~la~~~~~l~Pr~-~~ 775 (952)
+++.....+.+.+...++.+|||+|||+|.++..+++...+..+|+|+|+++.+++.|++++.. . +.
T Consensus 94 ~~~~~~~~~~~~~~~~~~~~VLD~G~G~G~~~~~la~~~~~~~~v~~vD~s~~~~~~a~~~~~~------------~~g~ 161 (275)
T 1yb2_A 94 ISEIDASYIIMRCGLRPGMDILEVGVGSGNMSSYILYALNGKGTLTVVERDEDNLKKAMDNLSE------------FYDI 161 (275)
T ss_dssp ------------CCCCTTCEEEEECCTTSHHHHHHHHHHTTSSEEEEECSCHHHHHHHHHHHHT------------TSCC
T ss_pred cChhhHHHHHHHcCCCCcCEEEEecCCCCHHHHHHHHHcCCCCEEEEEECCHHHHHHHHHHHHh------------cCCC
Confidence 3333344666666667788999999999999999988611237999999999999999887642 2 23
Q ss_pred ccEEEEEcCccccCCCCCCccEEEEccccccCChhHHHHHHHHHHHccCCC-EEEEEecCC
Q 002218 776 KSAVLFDGSITVFDSRLHGFDIGTCLEVIEHMEEDEASQFGNIVLSSFRPR-ILIVSTPNY 835 (952)
Q Consensus 776 ~nVtf~qGDa~dLpf~d~sFDVVVcieVIEHL~dD~l~~L~eeI~RvLKPG-~LIISTPN~ 835 (952)
.++++.++|+.+ ++..+.||+|++ |+++. . .+.+++.++|||| .+++.+|+.
T Consensus 162 ~~v~~~~~d~~~-~~~~~~fD~Vi~-----~~~~~-~-~~l~~~~~~LkpgG~l~i~~~~~ 214 (275)
T 1yb2_A 162 GNVRTSRSDIAD-FISDQMYDAVIA-----DIPDP-W-NHVQKIASMMKPGSVATFYLPNF 214 (275)
T ss_dssp TTEEEECSCTTT-CCCSCCEEEEEE-----CCSCG-G-GSHHHHHHTEEEEEEEEEEESSH
T ss_pred CcEEEEECchhc-cCcCCCccEEEE-----cCcCH-H-HHHHHHHHHcCCCCEEEEEeCCH
Confidence 579999999987 445678999998 55533 2 3446799999998 888888864
No 141
>1nt2_A Fibrillarin-like PRE-rRNA processing protein; adeMet, binding motif, RNA binding protein; HET: SAM; 2.90A {Archaeoglobus fulgidus} SCOP: c.66.1.3
Probab=99.14 E-value=1.4e-10 Score=117.81 Aligned_cols=103 Identities=10% Similarity=0.093 Sum_probs=76.4
Q ss_pred cCCCCEEEEEcCccchHHHHHhcCCCCCceEEEEeCChHHHHHHHHHHhhhhhcccccCCCCCCCccEEEEEcCcccc--
Q 002218 711 ESCATTLVDFGCGSGSLLDSLLDYPTALEKIVGVDISQKSLSRAAKIIHSKLSKKLDAAVPCTDVKSAVLFDGSITVF-- 788 (952)
Q Consensus 711 ~~k~krVLDIGCGeG~ll~~LAr~g~~~~qVVGVDISeemLe~ArkrLsa~la~~~~~l~Pr~~~~nVtf~qGDa~dL-- 788 (952)
..++.+|||+|||+|.++..+++..+ ..+|+|+|+|+.|++.+.+.... ..++.++.+|+.+.
T Consensus 55 ~~~g~~VLDlGcGtG~~~~~la~~~~-~~~V~gvD~s~~~l~~~~~~a~~--------------~~~v~~~~~d~~~~~~ 119 (210)
T 1nt2_A 55 LRGDERVLYLGAASGTTVSHLADIVD-EGIIYAVEYSAKPFEKLLELVRE--------------RNNIIPLLFDASKPWK 119 (210)
T ss_dssp CCSSCEEEEETCTTSHHHHHHHHHTT-TSEEEEECCCHHHHHHHHHHHHH--------------CSSEEEECSCTTCGGG
T ss_pred CCCCCEEEEECCcCCHHHHHHHHHcC-CCEEEEEECCHHHHHHHHHHHhc--------------CCCeEEEEcCCCCchh
Confidence 34678999999999999999987653 36899999999988766554321 13688899998774
Q ss_pred --CCCCCCccEEEEccccccCChhHHHHHHHHHHHccCCC-EEEEEec
Q 002218 789 --DSRLHGFDIGTCLEVIEHMEEDEASQFGNIVLSSFRPR-ILIVSTP 833 (952)
Q Consensus 789 --pf~d~sFDVVVcieVIEHL~dD~l~~L~eeI~RvLKPG-~LIISTP 833 (952)
++ .+.||+|++. +.++ ++...+.+++.++|||| .+++..+
T Consensus 120 ~~~~-~~~fD~V~~~-~~~~---~~~~~~l~~~~r~LkpgG~l~i~~~ 162 (210)
T 1nt2_A 120 YSGI-VEKVDLIYQD-IAQK---NQIEILKANAEFFLKEKGEVVIMVK 162 (210)
T ss_dssp TTTT-CCCEEEEEEC-CCST---THHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred hccc-ccceeEEEEe-ccCh---hHHHHHHHHHHHHhCCCCEEEEEEe
Confidence 33 3789999987 3222 34445456799999998 6666654
No 142
>1jsx_A Glucose-inhibited division protein B; methyltransferase fold, structural genomics, PSI, protein structure initiative; 2.40A {Escherichia coli} SCOP: c.66.1.20
Probab=99.14 E-value=1.6e-10 Score=113.91 Aligned_cols=99 Identities=11% Similarity=0.014 Sum_probs=77.4
Q ss_pred CCCEEEEEcCccchHHHHHhcCCCCCceEEEEeCChHHHHHHHHHHhhhhhcccccCCCCCCCccEEEEEcCccccCCCC
Q 002218 713 CATTLVDFGCGSGSLLDSLLDYPTALEKIVGVDISQKSLSRAAKIIHSKLSKKLDAAVPCTDVKSAVLFDGSITVFDSRL 792 (952)
Q Consensus 713 k~krVLDIGCGeG~ll~~LAr~g~~~~qVVGVDISeemLe~ArkrLsa~la~~~~~l~Pr~~~~nVtf~qGDa~dLpf~d 792 (952)
++.+|||+|||+|.++..+++.. +..+++|+|+|+.+++.|++++.. .+..++++.++|+.+.+ ..
T Consensus 65 ~~~~vLDiG~G~G~~~~~l~~~~-~~~~v~~vD~s~~~~~~a~~~~~~------------~~~~~v~~~~~d~~~~~-~~ 130 (207)
T 1jsx_A 65 QGERFIDVGTGPGLPGIPLSIVR-PEAHFTLLDSLGKRVRFLRQVQHE------------LKLENIEPVQSRVEEFP-SE 130 (207)
T ss_dssp CSSEEEEETCTTTTTHHHHHHHC-TTSEEEEEESCHHHHHHHHHHHHH------------TTCSSEEEEECCTTTSC-CC
T ss_pred CCCeEEEECCCCCHHHHHHHHHC-CCCEEEEEeCCHHHHHHHHHHHHH------------cCCCCeEEEecchhhCC-cc
Confidence 47899999999999999998764 237999999999999999887652 23346999999998876 45
Q ss_pred CCccEEEEccccccCChhHHHHHHHHHHHccCCC-EEEEE
Q 002218 793 HGFDIGTCLEVIEHMEEDEASQFGNIVLSSFRPR-ILIVS 831 (952)
Q Consensus 793 ~sFDVVVcieVIEHL~dD~l~~L~eeI~RvLKPG-~LIIS 831 (952)
+.||+|++..+ ++ . ..+.+.+.++|+|| .+++.
T Consensus 131 ~~~D~i~~~~~-~~----~-~~~l~~~~~~L~~gG~l~~~ 164 (207)
T 1jsx_A 131 PPFDGVISRAF-AS----L-NDMVSWCHHLPGEQGRFYAL 164 (207)
T ss_dssp SCEEEEECSCS-SS----H-HHHHHHHTTSEEEEEEEEEE
T ss_pred CCcCEEEEecc-CC----H-HHHHHHHHHhcCCCcEEEEE
Confidence 78999998653 22 2 34556799999999 55554
No 143
>4dcm_A Ribosomal RNA large subunit methyltransferase G; 23S rRNA (guanine1835-N2)-methyltransferase; HET: SAM; 2.30A {Escherichia coli}
Probab=99.14 E-value=1.9e-10 Score=127.18 Aligned_cols=131 Identities=18% Similarity=0.284 Sum_probs=94.4
Q ss_pred HHHHHHHhhcCCCCEEEEEcCccchHHHHHhcCCCCCceEEEEeCChHHHHHHHHHHhhhhhcccccCCCCCCCccEEEE
Q 002218 702 VEYALQHIKESCATTLVDFGCGSGSLLDSLLDYPTALEKIVGVDISQKSLSRAAKIIHSKLSKKLDAAVPCTDVKSAVLF 781 (952)
Q Consensus 702 ~efVldlL~~~k~krVLDIGCGeG~ll~~LAr~g~~~~qVVGVDISeemLe~ArkrLsa~la~~~~~l~Pr~~~~nVtf~ 781 (952)
.+++++.+....+.+|||+|||+|.++..+++.+ +..+|+|||+|+.+++.|++++....- ....+++++
T Consensus 211 ~~~ll~~l~~~~~~~VLDlGcG~G~~s~~la~~~-p~~~V~gvD~s~~al~~Ar~n~~~ngl---------~~~~~v~~~ 280 (375)
T 4dcm_A 211 ARFFMQHLPENLEGEIVDLGCGNGVIGLTLLDKN-PQAKVVFVDESPMAVASSRLNVETNMP---------EALDRCEFM 280 (375)
T ss_dssp HHHHHHTCCCSCCSEEEEETCTTCHHHHHHHHHC-TTCEEEEEESCHHHHHHHHHHHHHHCG---------GGGGGEEEE
T ss_pred HHHHHHhCcccCCCeEEEEeCcchHHHHHHHHHC-CCCEEEEEECcHHHHHHHHHHHHHcCC---------CcCceEEEE
Confidence 3456777766667899999999999999999875 348999999999999999988753210 012368999
Q ss_pred EcCccccCCCCCCccEEEEcccccc---CChhHHHHHHHHHHHccCCC-EEEEEecC-CchhHHHHh
Q 002218 782 DGSITVFDSRLHGFDIGTCLEVIEH---MEEDEASQFGNIVLSSFRPR-ILIVSTPN-YEYNAILQK 843 (952)
Q Consensus 782 qGDa~dLpf~d~sFDVVVcieVIEH---L~dD~l~~L~eeI~RvLKPG-~LIISTPN-~efN~lf~~ 843 (952)
.+|+.+ ++..+.||+|++.-.+++ +.......+.+++.++|||| .+++..+. ..|...+..
T Consensus 281 ~~D~~~-~~~~~~fD~Ii~nppfh~~~~~~~~~~~~~l~~~~~~LkpgG~l~iv~n~~~~~~~~l~~ 346 (375)
T 4dcm_A 281 INNALS-GVEPFRFNAVLCNPPFHQQHALTDNVAWEMFHHARRCLKINGELYIVANRHLDYFHKLKK 346 (375)
T ss_dssp ECSTTT-TCCTTCEEEEEECCCC-------CCHHHHHHHHHHHHEEEEEEEEEEEETTSCHHHHHHH
T ss_pred echhhc-cCCCCCeeEEEECCCcccCcccCHHHHHHHHHHHHHhCCCCcEEEEEEECCcCHHHHHHH
Confidence 999987 445678999999988875 33344445667899999998 55555443 334444443
No 144
>3tma_A Methyltransferase; thump domain; 2.05A {Thermus thermophilus}
Probab=99.14 E-value=1.3e-10 Score=125.94 Aligned_cols=131 Identities=11% Similarity=-0.015 Sum_probs=98.8
Q ss_pred CchhHHHHHHHHHHHhhcCCCCEEEEEcCccchHHHHHhcCCCCCceEEEEeCChHHHHHHHHHHhhhhhcccccCCCCC
Q 002218 694 SPPLSKQRVEYALQHIKESCATTLVDFGCGSGSLLDSLLDYPTALEKIVGVDISQKSLSRAAKIIHSKLSKKLDAAVPCT 773 (952)
Q Consensus 694 ~PPL~~QR~efVldlL~~~k~krVLDIGCGeG~ll~~LAr~g~~~~qVVGVDISeemLe~ArkrLsa~la~~~~~l~Pr~ 773 (952)
..|+.+.....+...+...++.+|||+|||+|.++..++..+++..+|+|+|+|+.+++.|++++.. .
T Consensus 184 ~a~l~~~la~~l~~~~~~~~~~~vLD~gcGsG~~~ie~a~~~~~~~~v~g~Di~~~~i~~a~~n~~~------------~ 251 (354)
T 3tma_A 184 RGSLTPVLAQALLRLADARPGMRVLDPFTGSGTIALEAASTLGPTSPVYAGDLDEKRLGLAREAALA------------S 251 (354)
T ss_dssp SCSCCHHHHHHHHHHTTCCTTCCEEESSCTTSHHHHHHHHHHCTTSCEEEEESCHHHHHHHHHHHHH------------T
T ss_pred CCCcCHHHHHHHHHHhCCCCCCEEEeCCCCcCHHHHHHHHhhCCCceEEEEECCHHHHHHHHHHHHH------------c
Confidence 3456665566677777767788999999999999999988542347899999999999999988653 2
Q ss_pred CCccEEEEEcCccccCCCCCCccEEEEccccccC-C-----hhHHHHHHHHHHHccCCC-EEEEEecCCc
Q 002218 774 DVKSAVLFDGSITVFDSRLHGFDIGTCLEVIEHM-E-----EDEASQFGNIVLSSFRPR-ILIVSTPNYE 836 (952)
Q Consensus 774 ~~~nVtf~qGDa~dLpf~d~sFDVVVcieVIEHL-~-----dD~l~~L~eeI~RvLKPG-~LIISTPN~e 836 (952)
+..++++.++|+.+++.....||+|++.-..... . .+....+.+.+.++|+|| .+++.|++.+
T Consensus 252 g~~~i~~~~~D~~~~~~~~~~~D~Ii~npPyg~r~~~~~~~~~~~~~~~~~~~~~LkpgG~l~i~t~~~~ 321 (354)
T 3tma_A 252 GLSWIRFLRADARHLPRFFPEVDRILANPPHGLRLGRKEGLFHLYWDFLRGALALLPPGGRVALLTLRPA 321 (354)
T ss_dssp TCTTCEEEECCGGGGGGTCCCCSEEEECCCSCC----CHHHHHHHHHHHHHHHHTSCTTCEEEEEESCHH
T ss_pred CCCceEEEeCChhhCccccCCCCEEEECCCCcCccCCcccHHHHHHHHHHHHHHhcCCCcEEEEEeCCHH
Confidence 3337999999999988777789999995332111 1 012245667899999998 8888898753
No 145
>1o9g_A RRNA methyltransferase; antibiotic resistance, Se-MAD; 1.5A {Streptomyces viridochromogenes} SCOP: c.66.1.29 PDB: 1o9h_A
Probab=99.13 E-value=1.2e-10 Score=119.52 Aligned_cols=133 Identities=18% Similarity=0.147 Sum_probs=85.4
Q ss_pred HHHHHHHHhhcCCCCEEEEEcCccchHHHHHhcC--CCCCceEEEEeCChHHHHHHHHHHhhh----hhcc--------c
Q 002218 701 RVEYALQHIKESCATTLVDFGCGSGSLLDSLLDY--PTALEKIVGVDISQKSLSRAAKIIHSK----LSKK--------L 766 (952)
Q Consensus 701 R~efVldlL~~~k~krVLDIGCGeG~ll~~LAr~--g~~~~qVVGVDISeemLe~ArkrLsa~----la~~--------~ 766 (952)
.++.+.+.+...++.+|||+|||+|.++..+++. . +..+|+|+|+|+.+++.|++++... +... .
T Consensus 39 l~~~~l~~~~~~~~~~vLD~gcGsG~~~~~la~~~~~-~~~~v~gvDis~~~l~~A~~~~~~~~~~~~~~~~~~~~~~~~ 117 (250)
T 1o9g_A 39 IFQRALARLPGDGPVTLWDPCCGSGYLLTVLGLLHRR-SLRQVIASDVDPAPLELAAKNLALLSPAGLTARELERREQSE 117 (250)
T ss_dssp HHHHHHHTSSCCSCEEEEETTCTTSHHHHHHHHHTGG-GEEEEEEEESCHHHHHHHHHHHHTTSHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhcccCCCCeEEECCCCCCHHHHHHHHHhcc-CCCeEEEEECCHHHHHHHHHHHHHhhhccccccchhhhhhhh
Confidence 3444444443345679999999999999999876 2 1278999999999999998776421 0000 0
Q ss_pred ccCCCC-----CCCccEE-------------EEEcCccccCC-----CCCCccEEEEccccccCCh-------hHHHHHH
Q 002218 767 DAAVPC-----TDVKSAV-------------LFDGSITVFDS-----RLHGFDIGTCLEVIEHMEE-------DEASQFG 816 (952)
Q Consensus 767 ~~l~Pr-----~~~~nVt-------------f~qGDa~dLpf-----~d~sFDVVVcieVIEHL~d-------D~l~~L~ 816 (952)
....+. ....+++ +.++|+.+... ....||+|+|.-.+.+... +....+.
T Consensus 118 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~fD~Iv~npp~~~~~~~~~~~~~~~~~~~l 197 (250)
T 1o9g_A 118 RFGKPSYLEAAQAARRLRERLTAEGGALPCAIRTADVFDPRALSAVLAGSAPDVVLTDLPYGERTHWEGQVPGQPVAGLL 197 (250)
T ss_dssp HHCCHHHHHHHHHHHHHHHHHHHTTSSCCEEEEECCTTCGGGHHHHHTTCCCSEEEEECCGGGSSSSSSCCCHHHHHHHH
T ss_pred hcccccchhhhhhhhhhhhhccccccccccceeecccccccccccccCCCCceEEEeCCCeeccccccccccccHHHHHH
Confidence 000000 0000144 99999987532 3348999999766555432 4445666
Q ss_pred HHHHHccCCC-EEEEEecCC
Q 002218 817 NIVLSSFRPR-ILIVSTPNY 835 (952)
Q Consensus 817 eeI~RvLKPG-~LIISTPN~ 835 (952)
+++.++|+|| .+++ +++.
T Consensus 198 ~~~~~~LkpgG~l~~-~~~~ 216 (250)
T 1o9g_A 198 RSLASALPAHAVIAV-TDRS 216 (250)
T ss_dssp HHHHHHSCTTCEEEE-EESS
T ss_pred HHHHHhcCCCcEEEE-eCcc
Confidence 7899999999 6666 5554
No 146
>2pwy_A TRNA (adenine-N(1)-)-methyltransferase; mtase, adoMet, TRMI, tRNA-M1A58; HET: SAH; 1.70A {Thermus thermophilus}
Probab=99.13 E-value=1.3e-10 Score=118.07 Aligned_cols=121 Identities=13% Similarity=0.157 Sum_probs=93.3
Q ss_pred hhHHHHHHHHHHHhhcCCCCEEEEEcCccchHHHHHhcC-CCCCceEEEEeCChHHHHHHHHHHhhhhhcccccCCCCCC
Q 002218 696 PLSKQRVEYALQHIKESCATTLVDFGCGSGSLLDSLLDY-PTALEKIVGVDISQKSLSRAAKIIHSKLSKKLDAAVPCTD 774 (952)
Q Consensus 696 PL~~QR~efVldlL~~~k~krVLDIGCGeG~ll~~LAr~-g~~~~qVVGVDISeemLe~ArkrLsa~la~~~~~l~Pr~~ 774 (952)
+++......+.+.+...++.+|||+|||+|.++..+++. + +..+|+|+|+++.+++.|++++.... +
T Consensus 79 ~~~~~~~~~~~~~~~~~~~~~vLdiG~G~G~~~~~l~~~~~-~~~~v~~~D~~~~~~~~a~~~~~~~~-----------g 146 (258)
T 2pwy_A 79 PTYPKDASAMVTLLDLAPGMRVLEAGTGSGGLTLFLARAVG-EKGLVESYEARPHHLAQAERNVRAFW-----------Q 146 (258)
T ss_dssp CCCHHHHHHHHHHTTCCTTCEEEEECCTTSHHHHHHHHHHC-TTSEEEEEESCHHHHHHHHHHHHHHC-----------C
T ss_pred cccchHHHHHHHHcCCCCCCEEEEECCCcCHHHHHHHHHhC-CCCEEEEEeCCHHHHHHHHHHHHHhc-----------C
Confidence 344444456777777778889999999999999999987 3 33799999999999999998764310 2
Q ss_pred CccEEEEEcCccccCCCCCCccEEEEccccccCChhHHHHHHHHHHHccCCC-EEEEEecCC
Q 002218 775 VKSAVLFDGSITVFDSRLHGFDIGTCLEVIEHMEEDEASQFGNIVLSSFRPR-ILIVSTPNY 835 (952)
Q Consensus 775 ~~nVtf~qGDa~dLpf~d~sFDVVVcieVIEHL~dD~l~~L~eeI~RvLKPG-~LIISTPN~ 835 (952)
..++++.++|+.+.++..+.||+|++ +++ +.. .+.+++.++|+|| .+++.+|+.
T Consensus 147 ~~~v~~~~~d~~~~~~~~~~~D~v~~-----~~~-~~~-~~l~~~~~~L~~gG~l~~~~~~~ 201 (258)
T 2pwy_A 147 VENVRFHLGKLEEAELEEAAYDGVAL-----DLM-EPW-KVLEKAALALKPDRFLVAYLPNI 201 (258)
T ss_dssp CCCEEEEESCGGGCCCCTTCEEEEEE-----ESS-CGG-GGHHHHHHHEEEEEEEEEEESCH
T ss_pred CCCEEEEECchhhcCCCCCCcCEEEE-----CCc-CHH-HHHHHHHHhCCCCCEEEEEeCCH
Confidence 34799999999988777788999998 344 222 3345799999998 888888764
No 147
>2igt_A SAM dependent methyltransferase; alpha-beta sandwich, beta-barrel, structural genomics, PSI-2 structure initiative; HET: MSE SAM GOL; 1.89A {Agrobacterium tumefaciens str} SCOP: c.66.1.51
Probab=99.13 E-value=4.5e-10 Score=122.40 Aligned_cols=141 Identities=12% Similarity=0.005 Sum_probs=99.6
Q ss_pred HHHHHhh-cCCCCEEEEEcCccchHHHHHhcCCCCCceEEEEeCChHHHHHHHHHHhhhhhcccccCCCCCCCc--cEEE
Q 002218 704 YALQHIK-ESCATTLVDFGCGSGSLLDSLLDYPTALEKIVGVDISQKSLSRAAKIIHSKLSKKLDAAVPCTDVK--SAVL 780 (952)
Q Consensus 704 fVldlL~-~~k~krVLDIGCGeG~ll~~LAr~g~~~~qVVGVDISeemLe~ArkrLsa~la~~~~~l~Pr~~~~--nVtf 780 (952)
++.+.+. ..++.+|||+|||+|.++..+++.+ .+|+|||+|+.+++.|++++... +.. ++++
T Consensus 143 ~l~~~~~~~~~~~~VLDlgcGtG~~sl~la~~g---a~V~~VD~s~~al~~a~~n~~~~------------gl~~~~v~~ 207 (332)
T 2igt_A 143 WLKNAVETADRPLKVLNLFGYTGVASLVAAAAG---AEVTHVDASKKAIGWAKENQVLA------------GLEQAPIRW 207 (332)
T ss_dssp HHHHHHHHSSSCCEEEEETCTTCHHHHHHHHTT---CEEEEECSCHHHHHHHHHHHHHH------------TCTTSCEEE
T ss_pred HHHHHHHhcCCCCcEEEcccccCHHHHHHHHcC---CEEEEEECCHHHHHHHHHHHHHc------------CCCccceEE
Confidence 4555554 3456799999999999999999987 59999999999999999876531 222 4999
Q ss_pred EEcCccccCCC----CCCccEEEEc----cc-----cccCChhHHHHHHHHHHHccCCC-EEEEEecCCchhHHHHhhcc
Q 002218 781 FDGSITVFDSR----LHGFDIGTCL----EV-----IEHMEEDEASQFGNIVLSSFRPR-ILIVSTPNYEYNAILQKSSS 846 (952)
Q Consensus 781 ~qGDa~dLpf~----d~sFDVVVci----eV-----IEHL~dD~l~~L~eeI~RvLKPG-~LIISTPN~efN~lf~~L~~ 846 (952)
+++|+.++... ...||+|++. .. +.+.. +....+.+.+.++|+|| .+++++.+..
T Consensus 208 i~~D~~~~l~~~~~~~~~fD~Ii~dPP~~~~~~~~~~~~~~-~~~~~ll~~~~~~LkpgG~lli~~~~~~---------- 276 (332)
T 2igt_A 208 ICEDAMKFIQREERRGSTYDIILTDPPKFGRGTHGEVWQLF-DHLPLMLDICREILSPKALGLVLTAYSI---------- 276 (332)
T ss_dssp ECSCHHHHHHHHHHHTCCBSEEEECCCSEEECTTCCEEEHH-HHHHHHHHHHHHTBCTTCCEEEEEECCT----------
T ss_pred EECcHHHHHHHHHhcCCCceEEEECCccccCCchHHHHHHH-HHHHHHHHHHHHhcCcCcEEEEEECCCC----------
Confidence 99999875432 5689999992 21 12222 23345556799999999 6566554421
Q ss_pred CccCCCCcchhhhccccccCCCCccccCHHHHHHHHHHHHHHcCcEEEE
Q 002218 847 TIQEDDPDEKTQLQSCKFRNHDHKFEWTRDQFNCWATELAARHNYSVEF 895 (952)
Q Consensus 847 ~ta~eYPde~~g~~~~~fRh~DHkFEWTReEFqsWae~La~q~GYsVef 895 (952)
..+.+.|...+.+.+.+.|+.++.
T Consensus 277 -------------------------~~~~~~~~~~l~~a~~~~g~~v~~ 300 (332)
T 2igt_A 277 -------------------------RASFYSMHELMRETMRGAGGVVAS 300 (332)
T ss_dssp -------------------------TSCHHHHHHHHHHHTTTSCSEEEE
T ss_pred -------------------------CCCHHHHHHHHHHHHHHcCCeEEE
Confidence 124556676666667778998874
No 148
>1af7_A Chemotaxis receptor methyltransferase CHER; chemotaxis receptor methylation; HET: SAH; 2.00A {Salmonella typhimurium} SCOP: a.58.1.1 c.66.1.8 PDB: 1bc5_A*
Probab=99.13 E-value=1.2e-10 Score=124.30 Aligned_cols=119 Identities=13% Similarity=0.073 Sum_probs=82.5
Q ss_pred CCCEEEEEcCccch----HHHHHhcC-CC-C-CceEEEEeCChHHHHHHHHHHhhhh--hc--------ccccCCCC-CC
Q 002218 713 CATTLVDFGCGSGS----LLDSLLDY-PT-A-LEKIVGVDISQKSLSRAAKIIHSKL--SK--------KLDAAVPC-TD 774 (952)
Q Consensus 713 k~krVLDIGCGeG~----ll~~LAr~-g~-~-~~qVVGVDISeemLe~ArkrLsa~l--a~--------~~~~l~Pr-~~ 774 (952)
+..+|||+|||+|. ++..|++. +. . ..+|+|+|+|+.||+.|++...... .. ......+. .+
T Consensus 105 ~~~rIld~GCgTGee~ysiAi~L~e~~~~~~~~~~I~atDis~~~L~~Ar~~~y~~~~~~~~~~~~~~~~f~~~~~~~~~ 184 (274)
T 1af7_A 105 GEYRVWSAAASTGEEPYSIAITLADALGMAPGRWKVFASDIDTEVLEKARSGIYRLSELKTLSPQQLQRYFMRGTGPHEG 184 (274)
T ss_dssp SCEEEEESCCTTTHHHHHHHHHHHHHHCSCTTSEEEEEEESCHHHHHHHHHTEEEGGGGTTSCHHHHHHHEEECCTTSCS
T ss_pred CCcEEEEeeccCChhHHHHHHHHHHhcccCCCCeEEEEEECCHHHHHHHHhcCCchhhhhcCCHHHHHHHhhccccCCCC
Confidence 45799999999998 55555554 20 0 2589999999999999987531100 00 00000000 00
Q ss_pred --------CccEEEEEcCccccCCC-CCCccEEEEccccccCChhHHHHHHHHHHHccCCCEEEEE
Q 002218 775 --------VKSAVLFDGSITVFDSR-LHGFDIGTCLEVIEHMEEDEASQFGNIVLSSFRPRILIVS 831 (952)
Q Consensus 775 --------~~nVtf~qGDa~dLpf~-d~sFDVVVcieVIEHL~dD~l~~L~eeI~RvLKPG~LIIS 831 (952)
..+|+|.++|+.+.+++ .+.||+|+|..|++|++++....+.+.+.+.|+||++++.
T Consensus 185 ~~~v~~~lr~~V~F~~~dl~~~~~~~~~~fDlI~crnvliyf~~~~~~~vl~~~~~~L~pgG~L~l 250 (274)
T 1af7_A 185 LVRVRQELANYVEFSSVNLLEKQYNVPGPFDAIFCRNVMIYFDKTTQEDILRRFVPLLKPDGLLFA 250 (274)
T ss_dssp EEEECHHHHTTEEEEECCTTCSSCCCCCCEEEEEECSSGGGSCHHHHHHHHHHHGGGEEEEEEEEE
T ss_pred ceeechhhcccCeEEecccCCCCCCcCCCeeEEEECCchHhCCHHHHHHHHHHHHHHhCCCcEEEE
Confidence 13699999999886554 5789999999999999977767777889999999944443
No 149
>1fp1_D Isoliquiritigenin 2'-O-methyltransferase; protein-substrate, protein-product complex; HET: SAH HCC; 1.82A {Medicago sativa} SCOP: a.4.5.29 c.66.1.12 PDB: 1fpq_A*
Probab=99.13 E-value=2e-10 Score=125.26 Aligned_cols=105 Identities=19% Similarity=0.225 Sum_probs=83.1
Q ss_pred HHHHhh-cCCCCEEEEEcCccchHHHHHhcCCCCCceEEEEeCChHHHHHHHHHHhhhhhcccccCCCCCCCccEEEEEc
Q 002218 705 ALQHIK-ESCATTLVDFGCGSGSLLDSLLDYPTALEKIVGVDISQKSLSRAAKIIHSKLSKKLDAAVPCTDVKSAVLFDG 783 (952)
Q Consensus 705 VldlL~-~~k~krVLDIGCGeG~ll~~LAr~g~~~~qVVGVDISeemLe~ArkrLsa~la~~~~~l~Pr~~~~nVtf~qG 783 (952)
+.+.+. ..+..+|||||||+|.++..+++.. +..+++++|+ +.+++.|++ .+++++..+
T Consensus 200 l~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~-~~~~~~~~D~-~~~~~~a~~------------------~~~v~~~~~ 259 (372)
T 1fp1_D 200 MLEIYTGFEGISTLVDVGGGSGRNLELIISKY-PLIKGINFDL-PQVIENAPP------------------LSGIEHVGG 259 (372)
T ss_dssp HHHHCCTTTTCSEEEEETCTTSHHHHHHHHHC-TTCEEEEEEC-HHHHTTCCC------------------CTTEEEEEC
T ss_pred HHHHhhccCCCCEEEEeCCCCcHHHHHHHHHC-CCCeEEEeCh-HHHHHhhhh------------------cCCCEEEeC
Confidence 344433 3356899999999999999999876 3478999999 888877632 136999999
Q ss_pred CccccCCCCCCccEEEEccccccCChhHHHHHHHHHHHccCCC-EEEEEe
Q 002218 784 SITVFDSRLHGFDIGTCLEVIEHMEEDEASQFGNIVLSSFRPR-ILIVST 832 (952)
Q Consensus 784 Da~dLpf~d~sFDVVVcieVIEHL~dD~l~~L~eeI~RvLKPG-~LIIST 832 (952)
|+.+ +++. ||+|++..++||++++....+.+++.++|||| .++|..
T Consensus 260 d~~~-~~~~--~D~v~~~~~lh~~~d~~~~~~l~~~~~~L~pgG~l~i~e 306 (372)
T 1fp1_D 260 DMFA-SVPQ--GDAMILKAVCHNWSDEKCIEFLSNCHKALSPNGKVIIVE 306 (372)
T ss_dssp CTTT-CCCC--EEEEEEESSGGGSCHHHHHHHHHHHHHHEEEEEEEEEEE
T ss_pred Cccc-CCCC--CCEEEEecccccCCHHHHHHHHHHHHHhcCCCCEEEEEE
Confidence 9987 5443 99999999999999776667777899999998 666653
No 150
>3mb5_A SAM-dependent methyltransferase; RNA methyltransferase, M1A, TRMI, intermolecular contacts, R specificity, tetramer, disulfide bond; HET: SAM; 1.60A {Pyrococcus abyssi} PDB: 3lga_A* 3lhd_C*
Probab=99.13 E-value=1.3e-10 Score=118.59 Aligned_cols=121 Identities=14% Similarity=0.068 Sum_probs=92.8
Q ss_pred hhHHHHHHHHHHHhhcCCCCEEEEEcCccchHHHHHhcC-CCCCceEEEEeCChHHHHHHHHHHhhhhhcccccCCCCCC
Q 002218 696 PLSKQRVEYALQHIKESCATTLVDFGCGSGSLLDSLLDY-PTALEKIVGVDISQKSLSRAAKIIHSKLSKKLDAAVPCTD 774 (952)
Q Consensus 696 PL~~QR~efVldlL~~~k~krVLDIGCGeG~ll~~LAr~-g~~~~qVVGVDISeemLe~ArkrLsa~la~~~~~l~Pr~~ 774 (952)
+++......+...+...++.+|||+|||+|.++..+++. + +..+|+|+|+++++++.|++++... ..
T Consensus 76 ~~~~~~~~~i~~~~~~~~~~~vldiG~G~G~~~~~l~~~~~-~~~~v~~~D~~~~~~~~a~~~~~~~-----------~~ 143 (255)
T 3mb5_A 76 IVHPKDAALIVAYAGISPGDFIVEAGVGSGALTLFLANIVG-PEGRVVSYEIREDFAKLAWENIKWA-----------GF 143 (255)
T ss_dssp CCCHHHHHHHHHHTTCCTTCEEEEECCTTSHHHHHHHHHHC-TTSEEEEECSCHHHHHHHHHHHHHH-----------TC
T ss_pred cccHhHHHHHHHhhCCCCCCEEEEecCCchHHHHHHHHHhC-CCeEEEEEecCHHHHHHHHHHHHHc-----------CC
Confidence 344555567777777778899999999999999999987 3 3489999999999999999887532 11
Q ss_pred CccEEEEEcCccccCCCCCCccEEEEccccccCChhHHHHHHHHHHHccCCC-EEEEEecCCc
Q 002218 775 VKSAVLFDGSITVFDSRLHGFDIGTCLEVIEHMEEDEASQFGNIVLSSFRPR-ILIVSTPNYE 836 (952)
Q Consensus 775 ~~nVtf~qGDa~dLpf~d~sFDVVVcieVIEHL~dD~l~~L~eeI~RvLKPG-~LIISTPN~e 836 (952)
..++++.++|+.+. +...+||+|++ +++ +.. .+.+++.++|+|| .+++.+|+.+
T Consensus 144 ~~~v~~~~~d~~~~-~~~~~~D~v~~-----~~~-~~~-~~l~~~~~~L~~gG~l~~~~~~~~ 198 (255)
T 3mb5_A 144 DDRVTIKLKDIYEG-IEEENVDHVIL-----DLP-QPE-RVVEHAAKALKPGGFFVAYTPCSN 198 (255)
T ss_dssp TTTEEEECSCGGGC-CCCCSEEEEEE-----CSS-CGG-GGHHHHHHHEEEEEEEEEEESSHH
T ss_pred CCceEEEECchhhc-cCCCCcCEEEE-----CCC-CHH-HHHHHHHHHcCCCCEEEEEECCHH
Confidence 22499999999865 45678999998 344 332 3345799999999 7777777643
No 151
>1g6q_1 HnRNP arginine N-methyltransferase; SAM-binding domain, beta-barrel, mixed alpha-beta, hexamer; 2.90A {Saccharomyces cerevisiae} SCOP: c.66.1.6
Probab=99.13 E-value=2.7e-10 Score=123.04 Aligned_cols=113 Identities=16% Similarity=0.106 Sum_probs=84.9
Q ss_pred HHHHHhhcCCCCEEEEEcCccchHHHHHhcCCCCCceEEEEeCChHHHHHHHHHHhhhhhcccccCCCCCCCccEEEEEc
Q 002218 704 YALQHIKESCATTLVDFGCGSGSLLDSLLDYPTALEKIVGVDISQKSLSRAAKIIHSKLSKKLDAAVPCTDVKSAVLFDG 783 (952)
Q Consensus 704 fVldlL~~~k~krVLDIGCGeG~ll~~LAr~g~~~~qVVGVDISeemLe~ArkrLsa~la~~~~~l~Pr~~~~nVtf~qG 783 (952)
.+.+.+...++++|||||||+|.++..+++.+. .+|+|+|++ .+++.|++++... ....+++++++
T Consensus 29 ai~~~~~~~~~~~VLDiGcGtG~ls~~la~~g~--~~v~~vD~s-~~~~~a~~~~~~~-----------~~~~~i~~~~~ 94 (328)
T 1g6q_1 29 AIIQNKDLFKDKIVLDVGCGTGILSMFAAKHGA--KHVIGVDMS-SIIEMAKELVELN-----------GFSDKITLLRG 94 (328)
T ss_dssp HHHHHHHHHTTCEEEEETCTTSHHHHHHHHTCC--SEEEEEESS-THHHHHHHHHHHT-----------TCTTTEEEEES
T ss_pred HHHhhHhhcCCCEEEEecCccHHHHHHHHHCCC--CEEEEEChH-HHHHHHHHHHHHc-----------CCCCCEEEEEC
Confidence 444444556788999999999999999998862 599999999 6999998876431 12246999999
Q ss_pred CccccCCCCCCccEEEEccccccCCh-hHHHHHHHHHHHccCCCEEEE
Q 002218 784 SITVFDSRLHGFDIGTCLEVIEHMEE-DEASQFGNIVLSSFRPRILIV 830 (952)
Q Consensus 784 Da~dLpf~d~sFDVVVcieVIEHL~d-D~l~~L~eeI~RvLKPG~LII 830 (952)
|+.+++++.++||+|++..+.+++.. .....+...+.++||||..++
T Consensus 95 d~~~~~~~~~~~D~Ivs~~~~~~l~~~~~~~~~l~~~~~~LkpgG~li 142 (328)
T 1g6q_1 95 KLEDVHLPFPKVDIIISEWMGYFLLYESMMDTVLYARDHYLVEGGLIF 142 (328)
T ss_dssp CTTTSCCSSSCEEEEEECCCBTTBSTTCCHHHHHHHHHHHEEEEEEEE
T ss_pred chhhccCCCCcccEEEEeCchhhcccHHHHHHHHHHHHhhcCCCeEEE
Confidence 99998877789999999765554431 223445567899999994333
No 152
>3uwp_A Histone-lysine N-methyltransferase, H3 lysine-79; epigenetics, tubercidin, structu genomics, structural genomics consortium, SGC; HET: 5ID; 2.05A {Homo sapiens} PDB: 4eqz_A* 3sx0_A* 4er0_A* 4er7_A* 1nw3_A* 4er6_A* 4er5_A* 3qow_A* 3qox_A* 4ek9_A* 4ekg_A* 4eki_A* 4er3_A* 3sr4_A*
Probab=99.13 E-value=1.6e-10 Score=130.51 Aligned_cols=128 Identities=13% Similarity=0.075 Sum_probs=93.8
Q ss_pred CchhHHHHHHHHHHHhhcCCCCEEEEEcCccchHHHHHhcCCCCCceEEEEeCChHHHHHHHHHHhhh---hhcccccCC
Q 002218 694 SPPLSKQRVEYALQHIKESCATTLVDFGCGSGSLLDSLLDYPTALEKIVGVDISQKSLSRAAKIIHSK---LSKKLDAAV 770 (952)
Q Consensus 694 ~PPL~~QR~efVldlL~~~k~krVLDIGCGeG~ll~~LAr~g~~~~qVVGVDISeemLe~ArkrLsa~---la~~~~~l~ 770 (952)
|.++....+..+++.+...++.+|||||||+|.++..++...+ ..+|+|||+++.+++.|+++.... ....
T Consensus 154 YGEt~~~~i~~il~~l~l~~gd~VLDLGCGtG~l~l~lA~~~g-~~kVvGIDiS~~~lelAr~n~e~frkr~~~~----- 227 (438)
T 3uwp_A 154 YGETSFDLVAQMIDEIKMTDDDLFVDLGSGVGQVVLQVAAATN-CKHHYGVEKADIPAKYAETMDREFRKWMKWY----- 227 (438)
T ss_dssp GGGTHHHHHHHHHHHHCCCTTCEEEEESCTTSHHHHHHHHHCC-CSEEEEEECCHHHHHHHHHHHHHHHHHHHHH-----
T ss_pred cCCCCHHHHHHHHHhcCCCCCCEEEEeCCCCCHHHHHHHHHCC-CCEEEEEeCCHHHHHHHHHHHHHHHHHHHHh-----
Confidence 3455666667777887777889999999999999999886532 246999999999999998754211 1100
Q ss_pred CCCCCccEEEEEcCccccCCCC--CCccEEEEccccccCChhHHHHHHHHHHHccCCC-EEEEE
Q 002218 771 PCTDVKSAVLFDGSITVFDSRL--HGFDIGTCLEVIEHMEEDEASQFGNIVLSSFRPR-ILIVS 831 (952)
Q Consensus 771 Pr~~~~nVtf~qGDa~dLpf~d--~sFDVVVcieVIEHL~dD~l~~L~eeI~RvLKPG-~LIIS 831 (952)
.....+|+|++||+.++++.+ ..||+|++..++ | .++....|. +++++|||| .+|++
T Consensus 228 -Gl~~~rVefi~GD~~~lp~~d~~~~aDVVf~Nn~~-F-~pdl~~aL~-Ei~RvLKPGGrIVss 287 (438)
T 3uwp_A 228 -GKKHAEYTLERGDFLSEEWRERIANTSVIFVNNFA-F-GPEVDHQLK-ERFANMKEGGRIVSS 287 (438)
T ss_dssp -TBCCCEEEEEECCTTSHHHHHHHHTCSEEEECCTT-C-CHHHHHHHH-HHHTTSCTTCEEEES
T ss_pred -CCCCCCeEEEECcccCCccccccCCccEEEEcccc-c-CchHHHHHH-HHHHcCCCCcEEEEe
Confidence 001248999999999988754 479999997765 3 346656665 699999999 55544
No 153
>2pjd_A Ribosomal RNA small subunit methyltransferase C; gene duplication, RNA modification, SAM binding; 2.10A {Escherichia coli}
Probab=99.12 E-value=6e-11 Score=128.54 Aligned_cols=118 Identities=13% Similarity=0.150 Sum_probs=90.7
Q ss_pred HHHHHHHHhhcCCCCEEEEEcCccchHHHHHhcCCCCCceEEEEeCChHHHHHHHHHHhhhhhcccccCCCCCCCccEEE
Q 002218 701 RVEYALQHIKESCATTLVDFGCGSGSLLDSLLDYPTALEKIVGVDISQKSLSRAAKIIHSKLSKKLDAAVPCTDVKSAVL 780 (952)
Q Consensus 701 R~efVldlL~~~k~krVLDIGCGeG~ll~~LAr~g~~~~qVVGVDISeemLe~ArkrLsa~la~~~~~l~Pr~~~~nVtf 780 (952)
..+++.+.+....+.+|||+|||+|.++..+++.+ +..+|+|+|+|+.+++.|++++... + .++++
T Consensus 184 ~~~~ll~~l~~~~~~~VLDlGcG~G~~~~~la~~~-~~~~v~~vD~s~~~l~~a~~~~~~~------------~-~~~~~ 249 (343)
T 2pjd_A 184 GSQLLLSTLTPHTKGKVLDVGCGAGVLSVAFARHS-PKIRLTLCDVSAPAVEASRATLAAN------------G-VEGEV 249 (343)
T ss_dssp HHHHHHHHSCTTCCSBCCBTTCTTSHHHHHHHHHC-TTCBCEEEESBHHHHHHHHHHHHHT------------T-CCCEE
T ss_pred HHHHHHHhcCcCCCCeEEEecCccCHHHHHHHHHC-CCCEEEEEECCHHHHHHHHHHHHHh------------C-CCCEE
Confidence 34566676655566799999999999999999876 3468999999999999999876421 1 24677
Q ss_pred EEcCccccCCCCCCccEEEEccccccC---ChhHHHHHHHHHHHccCCC-EEEEEecC
Q 002218 781 FDGSITVFDSRLHGFDIGTCLEVIEHM---EEDEASQFGNIVLSSFRPR-ILIVSTPN 834 (952)
Q Consensus 781 ~qGDa~dLpf~d~sFDVVVcieVIEHL---~dD~l~~L~eeI~RvLKPG-~LIISTPN 834 (952)
..+|+.+.. .++||+|++..++++. ..+....+.+++.++|||| .+++.+++
T Consensus 250 ~~~d~~~~~--~~~fD~Iv~~~~~~~g~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~ 305 (343)
T 2pjd_A 250 FASNVFSEV--KGRFDMIISNPPFHDGMQTSLDAAQTLIRGAVRHLNSGGELRIVANA 305 (343)
T ss_dssp EECSTTTTC--CSCEEEEEECCCCCSSSHHHHHHHHHHHHHHGGGEEEEEEEEEEEET
T ss_pred EEccccccc--cCCeeEEEECCCcccCccCCHHHHHHHHHHHHHhCCCCcEEEEEEcC
Confidence 889987643 6789999999998863 2344456677899999999 66666654
No 154
>3reo_A (ISO)eugenol O-methyltransferase; directed evolution, saturation mutagenesis, regioselectivity transferase; HET: SAH EUG; 1.90A {Clarkia breweri} PDB: 3tky_A* 1kyz_A* 1kyw_A*
Probab=99.12 E-value=4.4e-10 Score=122.99 Aligned_cols=99 Identities=13% Similarity=0.146 Sum_probs=80.9
Q ss_pred CCCCEEEEEcCccchHHHHHhcCCCCCceEEEEeCChHHHHHHHHHHhhhhhcccccCCCCCCCccEEEEEcCccccCCC
Q 002218 712 SCATTLVDFGCGSGSLLDSLLDYPTALEKIVGVDISQKSLSRAAKIIHSKLSKKLDAAVPCTDVKSAVLFDGSITVFDSR 791 (952)
Q Consensus 712 ~k~krVLDIGCGeG~ll~~LAr~g~~~~qVVGVDISeemLe~ArkrLsa~la~~~~~l~Pr~~~~nVtf~qGDa~dLpf~ 791 (952)
.+..+|||||||+|.++..+++.. +..+++++|+ +.+++.|++ ..++++..+|+.+ +++
T Consensus 202 ~~~~~vlDvG~G~G~~~~~l~~~~-p~~~~~~~D~-~~~~~~a~~------------------~~~v~~~~~d~~~-~~p 260 (368)
T 3reo_A 202 EGLTTIVDVGGGTGAVASMIVAKY-PSINAINFDL-PHVIQDAPA------------------FSGVEHLGGDMFD-GVP 260 (368)
T ss_dssp TTCSEEEEETCTTSHHHHHHHHHC-TTCEEEEEEC-HHHHTTCCC------------------CTTEEEEECCTTT-CCC
T ss_pred cCCCEEEEeCCCcCHHHHHHHHhC-CCCEEEEEeh-HHHHHhhhh------------------cCCCEEEecCCCC-CCC
Confidence 356899999999999999998876 4478999999 888876632 1479999999987 544
Q ss_pred CCCccEEEEccccccCChhHHHHHHHHHHHccCCC-EEEEEec
Q 002218 792 LHGFDIGTCLEVIEHMEEDEASQFGNIVLSSFRPR-ILIVSTP 833 (952)
Q Consensus 792 d~sFDVVVcieVIEHL~dD~l~~L~eeI~RvLKPG-~LIISTP 833 (952)
.. |+|++..++||+++++...+.+++.++|||| .++|...
T Consensus 261 ~~--D~v~~~~vlh~~~~~~~~~~l~~~~~~L~pgG~l~i~e~ 301 (368)
T 3reo_A 261 KG--DAIFIKWICHDWSDEHCLKLLKNCYAALPDHGKVIVAEY 301 (368)
T ss_dssp CC--SEEEEESCGGGBCHHHHHHHHHHHHHHSCTTCEEEEEEC
T ss_pred CC--CEEEEechhhcCCHHHHHHHHHHHHHHcCCCCEEEEEEe
Confidence 33 9999999999999777767778899999999 6766544
No 155
>1i9g_A Hypothetical protein RV2118C; mtase, adoMet, crystal, structural genomics, protein structure initiative; HET: SAM; 1.98A {Mycobacterium tuberculosis} SCOP: c.66.1.13
Probab=99.12 E-value=1.4e-10 Score=120.12 Aligned_cols=124 Identities=12% Similarity=0.068 Sum_probs=93.8
Q ss_pred hHHHHHHHHHHHhhcCCCCEEEEEcCccchHHHHHhcCCCCCceEEEEeCChHHHHHHHHHHhhhhhcccccCCCCCCCc
Q 002218 697 LSKQRVEYALQHIKESCATTLVDFGCGSGSLLDSLLDYPTALEKIVGVDISQKSLSRAAKIIHSKLSKKLDAAVPCTDVK 776 (952)
Q Consensus 697 L~~QR~efVldlL~~~k~krVLDIGCGeG~ll~~LAr~g~~~~qVVGVDISeemLe~ArkrLsa~la~~~~~l~Pr~~~~ 776 (952)
++..-...++..+...++.+|||+|||+|.++..+++..++..+|+|+|+++.+++.|++++..... ....
T Consensus 83 ~~~~~~~~i~~~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~g---------~~~~ 153 (280)
T 1i9g_A 83 IYPKDAAQIVHEGDIFPGARVLEAGAGSGALTLSLLRAVGPAGQVISYEQRADHAEHARRNVSGCYG---------QPPD 153 (280)
T ss_dssp CCHHHHHHHHHHTTCCTTCEEEEECCTTSHHHHHHHHHHCTTSEEEEECSCHHHHHHHHHHHHHHHT---------SCCT
T ss_pred ecHHHHHHHHHHcCCCCCCEEEEEcccccHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHhcC---------CCCC
Confidence 4444455677777777788999999999999999988521237999999999999999987653100 0134
Q ss_pred cEEEEEcCccccCCCCCCccEEEEccccccCChhHHHHHHHHHHHccCCC-EEEEEecCCc
Q 002218 777 SAVLFDGSITVFDSRLHGFDIGTCLEVIEHMEEDEASQFGNIVLSSFRPR-ILIVSTPNYE 836 (952)
Q Consensus 777 nVtf~qGDa~dLpf~d~sFDVVVcieVIEHL~dD~l~~L~eeI~RvLKPG-~LIISTPN~e 836 (952)
++++.++|+.+.++.++.||+|++ |++ ++. .+.+++.++|+|| .+++.+|+.+
T Consensus 154 ~v~~~~~d~~~~~~~~~~~D~v~~-----~~~-~~~-~~l~~~~~~L~pgG~l~~~~~~~~ 207 (280)
T 1i9g_A 154 NWRLVVSDLADSELPDGSVDRAVL-----DML-APW-EVLDAVSRLLVAGGVLMVYVATVT 207 (280)
T ss_dssp TEEEECSCGGGCCCCTTCEEEEEE-----ESS-CGG-GGHHHHHHHEEEEEEEEEEESSHH
T ss_pred cEEEEECchHhcCCCCCceeEEEE-----CCc-CHH-HHHHHHHHhCCCCCEEEEEeCCHH
Confidence 799999999988777788999998 344 222 3345799999999 8888888754
No 156
>1ne2_A Hypothetical protein TA1320; structural genomics, conserved hypothetical protein, PSI, protein structure initiative; 1.75A {Thermoplasma acidophilum} SCOP: c.66.1.32
Probab=99.11 E-value=3.9e-10 Score=111.36 Aligned_cols=97 Identities=12% Similarity=0.155 Sum_probs=73.1
Q ss_pred cCCCCEEEEEcCccchHHHHHhcCCCCCceEEEEeCChHHHHHHHHHHhhhhhcccccCCCCCCCccEEEEEcCccccCC
Q 002218 711 ESCATTLVDFGCGSGSLLDSLLDYPTALEKIVGVDISQKSLSRAAKIIHSKLSKKLDAAVPCTDVKSAVLFDGSITVFDS 790 (952)
Q Consensus 711 ~~k~krVLDIGCGeG~ll~~LAr~g~~~~qVVGVDISeemLe~ArkrLsa~la~~~~~l~Pr~~~~nVtf~qGDa~dLpf 790 (952)
..++.+|||+|||+|.++..+++.+ ..+|+|+|+|+.+++.|++++. +++++++|+.+++
T Consensus 49 ~~~~~~vlD~gcG~G~~~~~l~~~~--~~~v~~vD~~~~~~~~a~~~~~-----------------~~~~~~~d~~~~~- 108 (200)
T 1ne2_A 49 NIGGRSVIDAGTGNGILACGSYLLG--AESVTAFDIDPDAIETAKRNCG-----------------GVNFMVADVSEIS- 108 (200)
T ss_dssp SSBTSEEEEETCTTCHHHHHHHHTT--BSEEEEEESCHHHHHHHHHHCT-----------------TSEEEECCGGGCC-
T ss_pred CCCCCEEEEEeCCccHHHHHHHHcC--CCEEEEEECCHHHHHHHHHhcC-----------------CCEEEECcHHHCC-
Confidence 4467899999999999999999875 2579999999999999987531 6899999998875
Q ss_pred CCCCccEEEEccccccCChhHHHHHHHHHHHccCCC-EEEEE
Q 002218 791 RLHGFDIGTCLEVIEHMEEDEASQFGNIVLSSFRPR-ILIVS 831 (952)
Q Consensus 791 ~d~sFDVVVcieVIEHL~dD~l~~L~eeI~RvLKPG-~LIIS 831 (952)
..||+|++...++|+.......+.+.+.+++ | .+++.
T Consensus 109 --~~~D~v~~~~p~~~~~~~~~~~~l~~~~~~~--g~~~~~~ 146 (200)
T 1ne2_A 109 --GKYDTWIMNPPFGSVVKHSDRAFIDKAFETS--MWIYSIG 146 (200)
T ss_dssp --CCEEEEEECCCC-------CHHHHHHHHHHE--EEEEEEE
T ss_pred --CCeeEEEECCCchhccCchhHHHHHHHHHhc--CcEEEEE
Confidence 6899999999999987543345556788888 6 34443
No 157
>3p2e_A 16S rRNA methylase; methyltransferase, transferase, NPMA; HET: SAH; 1.68A {Escherichia coli} PDB: 3p2i_A 3p2k_A* 3pb3_A* 3mte_A*
Probab=99.10 E-value=7.2e-11 Score=121.26 Aligned_cols=108 Identities=11% Similarity=0.066 Sum_probs=73.1
Q ss_pred CCCCEEEEEcCccchHHHHHhcCCCCCceEEEEeCC-hHHHHHH---HHHHhhhhhcccccCCCCCCCccEEEEEcCccc
Q 002218 712 SCATTLVDFGCGSGSLLDSLLDYPTALEKIVGVDIS-QKSLSRA---AKIIHSKLSKKLDAAVPCTDVKSAVLFDGSITV 787 (952)
Q Consensus 712 ~k~krVLDIGCGeG~ll~~LAr~g~~~~qVVGVDIS-eemLe~A---rkrLsa~la~~~~~l~Pr~~~~nVtf~qGDa~d 787 (952)
.++.+|||||||+|.++..|++.. +..+|+|||+| +.|++.| +++.. +.+..++++.++|+.+
T Consensus 23 ~~~~~vLDiGCG~G~~~~~la~~~-~~~~v~GvD~s~~~ml~~A~~A~~~~~------------~~~~~~v~~~~~d~~~ 89 (225)
T 3p2e_A 23 QFDRVHIDLGTGDGRNIYKLAIND-QNTFYIGIDPVKENLFDISKKIIKKPS------------KGGLSNVVFVIAAAES 89 (225)
T ss_dssp TCSEEEEEETCTTSHHHHHHHHTC-TTEEEEEECSCCGGGHHHHHHHTSCGG------------GTCCSSEEEECCBTTB
T ss_pred CCCCEEEEEeccCcHHHHHHHHhC-CCCEEEEEeCCHHHHHHHHHHHHHHHH------------HcCCCCeEEEEcCHHH
Confidence 366799999999999999998543 34899999999 7787776 43321 1244589999999998
Q ss_pred cCCCCCCccEEEEccccccCC-------hhHHHHHHHHHHHccCCC-EEEE-EecCC
Q 002218 788 FDSRLHGFDIGTCLEVIEHME-------EDEASQFGNIVLSSFRPR-ILIV-STPNY 835 (952)
Q Consensus 788 Lpf~d~sFDVVVcieVIEHL~-------dD~l~~L~eeI~RvLKPG-~LII-STPN~ 835 (952)
++. ..||.|.+..+..+.+ .+. ..+.+++.++|||| .+++ .+.+.
T Consensus 90 l~~--~~~d~v~~i~~~~~~~~~~~~~~~~~-~~~l~~~~r~LkpGG~l~i~~~~~~ 143 (225)
T 3p2e_A 90 LPF--ELKNIADSISILFPWGTLLEYVIKPN-RDILSNVADLAKKEAHFEFVTTYSD 143 (225)
T ss_dssp CCG--GGTTCEEEEEEESCCHHHHHHHHTTC-HHHHHHHHTTEEEEEEEEEEECCCC
T ss_pred hhh--hccCeEEEEEEeCCCcHHhhhhhcch-HHHHHHHHHhcCCCcEEEEEEeccc
Confidence 853 2335555554432221 111 23445799999998 5555 44443
No 158
>2ozv_A Hypothetical protein ATU0636; structural genomics, predicted transferase, predicted O-methyltransferase, PFAM PF05175; HET: MSE; 1.70A {Agrobacterium tumefaciens str}
Probab=99.10 E-value=2.4e-10 Score=119.35 Aligned_cols=127 Identities=11% Similarity=0.028 Sum_probs=87.4
Q ss_pred HHHHhhcCCCCEEEEEcCccchHHHHHhcCCCCCceEEEEeCChHHHHHHHHHHhhhhhcccccCCCCCCCccEEEEEcC
Q 002218 705 ALQHIKESCATTLVDFGCGSGSLLDSLLDYPTALEKIVGVDISQKSLSRAAKIIHSKLSKKLDAAVPCTDVKSAVLFDGS 784 (952)
Q Consensus 705 VldlL~~~k~krVLDIGCGeG~ll~~LAr~g~~~~qVVGVDISeemLe~ArkrLsa~la~~~~~l~Pr~~~~nVtf~qGD 784 (952)
+...+...++.+|||+|||+|.++..+++.. +..+|+|||+++.+++.|++++..... .....+++++++|
T Consensus 28 L~~~~~~~~~~~VLDlG~G~G~~~l~la~~~-~~~~v~gvDi~~~~~~~a~~n~~~~~~--------~~l~~~v~~~~~D 98 (260)
T 2ozv_A 28 LASLVADDRACRIADLGAGAGAAGMAVAARL-EKAEVTLYERSQEMAEFARRSLELPDN--------AAFSARIEVLEAD 98 (260)
T ss_dssp HHHTCCCCSCEEEEECCSSSSHHHHHHHHHC-TTEEEEEEESSHHHHHHHHHHTTSGGG--------TTTGGGEEEEECC
T ss_pred HHHHhcccCCCEEEEeCChHhHHHHHHHHhC-CCCeEEEEECCHHHHHHHHHHHHhhhh--------CCCcceEEEEeCC
Confidence 3444455567899999999999999999875 347999999999999999987542000 0112369999999
Q ss_pred cccc-------CCCCCCccEEEEcccc----------------ccCChhHHHHHHHHHHHccCCC-EEEEEecCCchhHH
Q 002218 785 ITVF-------DSRLHGFDIGTCLEVI----------------EHMEEDEASQFGNIVLSSFRPR-ILIVSTPNYEYNAI 840 (952)
Q Consensus 785 a~dL-------pf~d~sFDVVVcieVI----------------EHL~dD~l~~L~eeI~RvLKPG-~LIISTPN~efN~l 840 (952)
+.++ .+....||+|++.-.. .|........+.+.+.++|||| .+++..|......+
T Consensus 99 ~~~~~~~~~~~~~~~~~fD~Vv~nPPy~~~~~~~~~~~~~~~a~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~ 178 (260)
T 2ozv_A 99 VTLRAKARVEAGLPDEHFHHVIMNPPYNDAGDRRTPDALKAEAHAMTEGLFEDWIRTASAIMVSGGQLSLISRPQSVAEI 178 (260)
T ss_dssp TTCCHHHHHHTTCCTTCEEEEEECCCC---------------------CCHHHHHHHHHHHEEEEEEEEEEECGGGHHHH
T ss_pred HHHHhhhhhhhccCCCCcCEEEECCCCcCCCCCCCcCHHHHHHhhcCcCCHHHHHHHHHHHcCCCCEEEEEEcHHHHHHH
Confidence 9887 2456789999997221 1222222456667899999998 66666665443333
No 159
>1fp2_A Isoflavone O-methyltransferase; protein-product complex; HET: SAH HMO; 1.40A {Medicago sativa} SCOP: a.4.5.29 c.66.1.12 PDB: 1fpx_A* 2qyo_A*
Probab=99.09 E-value=5.1e-10 Score=120.98 Aligned_cols=99 Identities=10% Similarity=0.105 Sum_probs=80.6
Q ss_pred CCCCEEEEEcCccchHHHHHhcCCCCCceEEEEeCChHHHHHHHHHHhhhhhcccccCCCCCCCccEEEEEcCccccCCC
Q 002218 712 SCATTLVDFGCGSGSLLDSLLDYPTALEKIVGVDISQKSLSRAAKIIHSKLSKKLDAAVPCTDVKSAVLFDGSITVFDSR 791 (952)
Q Consensus 712 ~k~krVLDIGCGeG~ll~~LAr~g~~~~qVVGVDISeemLe~ArkrLsa~la~~~~~l~Pr~~~~nVtf~qGDa~dLpf~ 791 (952)
.+..+|||||||+|.++..+++.. +..+++|+|+ +.+++.|++ ..++++..+|+.+ +.+
T Consensus 187 ~~~~~vlDvG~G~G~~~~~l~~~~-p~~~~~~~D~-~~~~~~a~~------------------~~~v~~~~~d~~~-~~p 245 (352)
T 1fp2_A 187 DGLESIVDVGGGTGTTAKIICETF-PKLKCIVFDR-PQVVENLSG------------------SNNLTYVGGDMFT-SIP 245 (352)
T ss_dssp TTCSEEEEETCTTSHHHHHHHHHC-TTCEEEEEEC-HHHHTTCCC------------------BTTEEEEECCTTT-CCC
T ss_pred ccCceEEEeCCCccHHHHHHHHHC-CCCeEEEeeC-HHHHhhccc------------------CCCcEEEeccccC-CCC
Confidence 356899999999999999999765 3468999999 999887742 1359999999976 433
Q ss_pred CCCccEEEEccccccCChhHHHHHHHHHHHccCC---C-EEEEEec
Q 002218 792 LHGFDIGTCLEVIEHMEEDEASQFGNIVLSSFRP---R-ILIVSTP 833 (952)
Q Consensus 792 d~sFDVVVcieVIEHL~dD~l~~L~eeI~RvLKP---G-~LIISTP 833 (952)
.||+|++..++||++++....+.+++.++||| | .++|..+
T Consensus 246 --~~D~v~~~~~lh~~~d~~~~~~l~~~~~~L~p~~~gG~l~i~e~ 289 (352)
T 1fp2_A 246 --NADAVLLKYILHNWTDKDCLRILKKCKEAVTNDGKRGKVTIIDM 289 (352)
T ss_dssp --CCSEEEEESCGGGSCHHHHHHHHHHHHHHHSGGGCCCEEEEEEC
T ss_pred --CccEEEeehhhccCCHHHHHHHHHHHHHhCCCCCCCcEEEEEEe
Confidence 39999999999999976666677789999999 8 7777654
No 160
>3p9c_A Caffeic acid O-methyltransferase; S-adenosylmethionine dependent O-methyltransferase; HET: SAH; 1.80A {Lolium perenne} PDB: 3p9i_A* 3p9k_A*
Probab=99.09 E-value=1.1e-09 Score=119.81 Aligned_cols=106 Identities=14% Similarity=0.138 Sum_probs=83.8
Q ss_pred HHHHhh-cCCCCEEEEEcCccchHHHHHhcCCCCCceEEEEeCChHHHHHHHHHHhhhhhcccccCCCCCCCccEEEEEc
Q 002218 705 ALQHIK-ESCATTLVDFGCGSGSLLDSLLDYPTALEKIVGVDISQKSLSRAAKIIHSKLSKKLDAAVPCTDVKSAVLFDG 783 (952)
Q Consensus 705 VldlL~-~~k~krVLDIGCGeG~ll~~LAr~g~~~~qVVGVDISeemLe~ArkrLsa~la~~~~~l~Pr~~~~nVtf~qG 783 (952)
+++.+. ..+..+|||||||+|.++..+++.. +..+++++|+ +.+++.|++ ..++++..+
T Consensus 192 ~~~~~~~~~~~~~vlDvG~G~G~~~~~l~~~~-p~~~~~~~D~-~~~~~~a~~------------------~~~v~~~~~ 251 (364)
T 3p9c_A 192 LLELYHGFEGLGTLVDVGGGVGATVAAIAAHY-PTIKGVNFDL-PHVISEAPQ------------------FPGVTHVGG 251 (364)
T ss_dssp HHHHCCTTTTCSEEEEETCTTSHHHHHHHHHC-TTCEEEEEEC-HHHHTTCCC------------------CTTEEEEEC
T ss_pred HHHhcccccCCCEEEEeCCCCCHHHHHHHHHC-CCCeEEEecC-HHHHHhhhh------------------cCCeEEEeC
Confidence 334443 3456899999999999999998865 3478999999 888776632 147999999
Q ss_pred CccccCCCCCCccEEEEccccccCChhHHHHHHHHHHHccCCC-EEEEEec
Q 002218 784 SITVFDSRLHGFDIGTCLEVIEHMEEDEASQFGNIVLSSFRPR-ILIVSTP 833 (952)
Q Consensus 784 Da~dLpf~d~sFDVVVcieVIEHL~dD~l~~L~eeI~RvLKPG-~LIISTP 833 (952)
|+.+ +++.. |+|++..++||+++++...+.+++.++|||| .++|...
T Consensus 252 D~~~-~~p~~--D~v~~~~vlh~~~d~~~~~~L~~~~~~L~pgG~l~i~e~ 299 (364)
T 3p9c_A 252 DMFK-EVPSG--DTILMKWILHDWSDQHCATLLKNCYDALPAHGKVVLVQC 299 (364)
T ss_dssp CTTT-CCCCC--SEEEEESCGGGSCHHHHHHHHHHHHHHSCTTCEEEEEEC
T ss_pred CcCC-CCCCC--CEEEehHHhccCCHHHHHHHHHHHHHHcCCCCEEEEEEe
Confidence 9987 55543 9999999999999777777778899999998 6766543
No 161
>3gdh_A Trimethylguanosine synthase homolog; M7G, CAP, dimethyltransferase, usnRNA, snoRNA, telomerase, cytoplasm, methyltransferase, nucleus; HET: MGP SAH; 2.00A {Homo sapiens} PDB: 3egi_A*
Probab=99.09 E-value=5.6e-11 Score=120.42 Aligned_cols=101 Identities=12% Similarity=0.088 Sum_probs=83.1
Q ss_pred CCCCEEEEEcCccchHHHHHhcCCCCCceEEEEeCChHHHHHHHHHHhhhhhcccccCCCCCCC-ccEEEEEcCccccCC
Q 002218 712 SCATTLVDFGCGSGSLLDSLLDYPTALEKIVGVDISQKSLSRAAKIIHSKLSKKLDAAVPCTDV-KSAVLFDGSITVFDS 790 (952)
Q Consensus 712 ~k~krVLDIGCGeG~ll~~LAr~g~~~~qVVGVDISeemLe~ArkrLsa~la~~~~~l~Pr~~~-~nVtf~qGDa~dLpf 790 (952)
.++.+|||+|||+|.++..+++.+ .+|+|+|+|+.+++.|++++.. .+. .+++++++|+.+++
T Consensus 77 ~~~~~vLD~gcG~G~~~~~la~~~---~~v~~vD~s~~~~~~a~~~~~~------------~~~~~~~~~~~~d~~~~~- 140 (241)
T 3gdh_A 77 FKCDVVVDAFCGVGGNTIQFALTG---MRVIAIDIDPVKIALARNNAEV------------YGIADKIEFICGDFLLLA- 140 (241)
T ss_dssp SCCSEEEETTCTTSHHHHHHHHTT---CEEEEEESCHHHHHHHHHHHHH------------TTCGGGEEEEESCHHHHG-
T ss_pred cCCCEEEECccccCHHHHHHHHcC---CEEEEEECCHHHHHHHHHHHHH------------cCCCcCeEEEECChHHhc-
Confidence 378899999999999999999987 7999999999999999987653 122 48999999999887
Q ss_pred CCCCccEEEEccccccCChhHHHHHHHHHHHccCCC-EEEE
Q 002218 791 RLHGFDIGTCLEVIEHMEEDEASQFGNIVLSSFRPR-ILIV 830 (952)
Q Consensus 791 ~d~sFDVVVcieVIEHL~dD~l~~L~eeI~RvLKPG-~LII 830 (952)
....||+|++...++|+.... ..+ .++.++|+|| .+++
T Consensus 141 ~~~~~D~v~~~~~~~~~~~~~-~~~-~~~~~~L~pgG~~i~ 179 (241)
T 3gdh_A 141 SFLKADVVFLSPPWGGPDYAT-AET-FDIRTMMSPDGFEIF 179 (241)
T ss_dssp GGCCCSEEEECCCCSSGGGGG-SSS-BCTTTSCSSCHHHHH
T ss_pred ccCCCCEEEECCCcCCcchhh-hHH-HHHHhhcCCcceeHH
Confidence 567999999999999987443 233 3588999999 5444
No 162
>3r3h_A O-methyltransferase, SAM-dependent; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 2.65A {Legionella pneumophila subsp}
Probab=99.09 E-value=1.4e-10 Score=120.20 Aligned_cols=117 Identities=12% Similarity=0.084 Sum_probs=86.0
Q ss_pred HHHHHHHHHHhhcCCCCEEEEEcCccchHHHHHhcCCCCCceEEEEeCChHHHHHHHHHHhhhhhcccccCCCCCCCccE
Q 002218 699 KQRVEYALQHIKESCATTLVDFGCGSGSLLDSLLDYPTALEKIVGVDISQKSLSRAAKIIHSKLSKKLDAAVPCTDVKSA 778 (952)
Q Consensus 699 ~QR~efVldlL~~~k~krVLDIGCGeG~ll~~LAr~g~~~~qVVGVDISeemLe~ArkrLsa~la~~~~~l~Pr~~~~nV 778 (952)
.....++..++...++++|||||||+|..+..|++..++..+|+|||+++++++.|++++... ....+|
T Consensus 46 ~~~~~~l~~l~~~~~~~~VLDiG~G~G~~t~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~-----------g~~~~i 114 (242)
T 3r3h_A 46 PEQAQFMQMLIRLTRAKKVLELGTFTGYSALAMSLALPDDGQVITCDINEGWTKHAHPYWREA-----------KQEHKI 114 (242)
T ss_dssp HHHHHHHHHHHHHHTCSEEEEEESCCSHHHHHHHHTSCTTCEEEEEECCCSSCCCSHHHHHHT-----------TCTTTE
T ss_pred HHHHHHHHHHHhhcCcCEEEEeeCCcCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHc-----------CCCCcE
Confidence 334445555555567889999999999999999986433479999999999999998877531 122479
Q ss_pred EEEEcCccccCCC------CCCccEEEEccccccCChhHHHHHHHHHHHccCCC-EEEEE
Q 002218 779 VLFDGSITVFDSR------LHGFDIGTCLEVIEHMEEDEASQFGNIVLSSFRPR-ILIVS 831 (952)
Q Consensus 779 tf~qGDa~dLpf~------d~sFDVVVcieVIEHL~dD~l~~L~eeI~RvLKPG-~LIIS 831 (952)
+++++|+.+.... .+.||+|++.... .....+.+.+.++|||| .+++.
T Consensus 115 ~~~~gda~~~l~~~~~~~~~~~fD~V~~d~~~-----~~~~~~l~~~~~~LkpGG~lv~d 169 (242)
T 3r3h_A 115 KLRLGPALDTLHSLLNEGGEHQFDFIFIDADK-----TNYLNYYELALKLVTPKGLIAID 169 (242)
T ss_dssp EEEESCHHHHHHHHHHHHCSSCEEEEEEESCG-----GGHHHHHHHHHHHEEEEEEEEEE
T ss_pred EEEEcCHHHHHHHHhhccCCCCEeEEEEcCCh-----HHhHHHHHHHHHhcCCCeEEEEE
Confidence 9999999775332 4789999886542 22234456799999999 55554
No 163
>3m33_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, MCSG, midwest center for structural genomics; 2.19A {Deinococcus radiodurans}
Probab=99.08 E-value=5e-11 Score=120.56 Aligned_cols=91 Identities=13% Similarity=0.081 Sum_probs=74.1
Q ss_pred CCCCEEEEEcCccchHHHHHhcCCCCCceEEEEeCChHHHHHHHHHHhhhhhcccccCCCCCCCccEEEEEcCc-cccCC
Q 002218 712 SCATTLVDFGCGSGSLLDSLLDYPTALEKIVGVDISQKSLSRAAKIIHSKLSKKLDAAVPCTDVKSAVLFDGSI-TVFDS 790 (952)
Q Consensus 712 ~k~krVLDIGCGeG~ll~~LAr~g~~~~qVVGVDISeemLe~ArkrLsa~la~~~~~l~Pr~~~~nVtf~qGDa-~dLpf 790 (952)
.++.+|||||||+|.++..+++.+ .+|+|+|+|+.+++.|+++. +++++.++|+ ..+++
T Consensus 47 ~~~~~vLDiGcG~G~~~~~l~~~~---~~v~~vD~s~~~~~~a~~~~-----------------~~~~~~~~d~~~~~~~ 106 (226)
T 3m33_A 47 TPQTRVLEAGCGHGPDAARFGPQA---ARWAAYDFSPELLKLARANA-----------------PHADVYEWNGKGELPA 106 (226)
T ss_dssp CTTCEEEEESCTTSHHHHHHGGGS---SEEEEEESCHHHHHHHHHHC-----------------TTSEEEECCSCSSCCT
T ss_pred CCCCeEEEeCCCCCHHHHHHHHcC---CEEEEEECCHHHHHHHHHhC-----------------CCceEEEcchhhccCC
Confidence 467899999999999999999986 79999999999999998751 3689999999 56777
Q ss_pred C-CCCccEEEEccccccCChhHHHHHHHHHHHccCCCEEEE
Q 002218 791 R-LHGFDIGTCLEVIEHMEEDEASQFGNIVLSSFRPRILIV 830 (952)
Q Consensus 791 ~-d~sFDVVVcieVIEHL~dD~l~~L~eeI~RvLKPG~LII 830 (952)
. +++||+|++.. +.. .+.+++.++||||..++
T Consensus 107 ~~~~~fD~v~~~~-------~~~-~~l~~~~~~LkpgG~l~ 139 (226)
T 3m33_A 107 GLGAPFGLIVSRR-------GPT-SVILRLPELAAPDAHFL 139 (226)
T ss_dssp TCCCCEEEEEEES-------CCS-GGGGGHHHHEEEEEEEE
T ss_pred cCCCCEEEEEeCC-------CHH-HHHHHHHHHcCCCcEEE
Confidence 7 78999999972 121 23346999999994444
No 164
>3c3p_A Methyltransferase; NP_951602.1, structural genomics, joint for structural genomics, JCSG, protein structure initiative transferase; 1.90A {Geobacter sulfurreducens pca}
Probab=99.08 E-value=5e-10 Score=111.59 Aligned_cols=121 Identities=13% Similarity=0.072 Sum_probs=85.1
Q ss_pred chhHHHHHHHHHHHhhcCCCCEEEEEcCccchHHHHHhcCCCCCceEEEEeCChHHHHHHHHHHhhhhhcccccCCCCCC
Q 002218 695 PPLSKQRVEYALQHIKESCATTLVDFGCGSGSLLDSLLDYPTALEKIVGVDISQKSLSRAAKIIHSKLSKKLDAAVPCTD 774 (952)
Q Consensus 695 PPL~~QR~efVldlL~~~k~krVLDIGCGeG~ll~~LAr~g~~~~qVVGVDISeemLe~ArkrLsa~la~~~~~l~Pr~~ 774 (952)
|........++..++...++.+|||||||+|..+..+++..+...+|+|+|+++.+++.|++++... ..
T Consensus 38 p~~~~~~~~~l~~l~~~~~~~~vLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~-----------~~ 106 (210)
T 3c3p_A 38 PIVDRQTGRLLYLLARIKQPQLVVVPGDGLGCASWWFARAISISSRVVMIDPDRDNVEHARRMLHDN-----------GL 106 (210)
T ss_dssp CCCCHHHHHHHHHHHHHHCCSEEEEESCGGGHHHHHHHTTSCTTCEEEEEESCHHHHHHHHHHHHHH-----------SG
T ss_pred CCcCHHHHHHHHHHHHhhCCCEEEEEcCCccHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHC-----------CC
Confidence 3333333344444444457789999999999999999987422479999999999999999876531 11
Q ss_pred CccEEEEEcCcccc-CCCCCCccEEEEccccccCChhHHHHHHHHHHHccCCC-EEEEEe
Q 002218 775 VKSAVLFDGSITVF-DSRLHGFDIGTCLEVIEHMEEDEASQFGNIVLSSFRPR-ILIVST 832 (952)
Q Consensus 775 ~~nVtf~qGDa~dL-pf~d~sFDVVVcieVIEHL~dD~l~~L~eeI~RvLKPG-~LIIST 832 (952)
..+++++++|+.+. +...+ ||+|++....+ +. ..+.+.+.++|||| .+++..
T Consensus 107 ~~~v~~~~~d~~~~~~~~~~-fD~v~~~~~~~----~~-~~~l~~~~~~LkpgG~lv~~~ 160 (210)
T 3c3p_A 107 IDRVELQVGDPLGIAAGQRD-IDILFMDCDVF----NG-ADVLERMNRCLAKNALLIAVN 160 (210)
T ss_dssp GGGEEEEESCHHHHHTTCCS-EEEEEEETTTS----CH-HHHHHHHGGGEEEEEEEEEES
T ss_pred CceEEEEEecHHHHhccCCC-CCEEEEcCChh----hh-HHHHHHHHHhcCCCeEEEEEC
Confidence 23699999999764 44345 99999864321 22 34556799999999 555543
No 165
>1fbn_A MJ fibrillarin homologue; MJ proteins, ribosomal RNA processing, snoRNP, structural genomics, BSGC structure funded by NIH; 1.60A {Methanocaldococcus jannaschii} SCOP: c.66.1.3 PDB: 1g8s_A
Probab=99.07 E-value=3.5e-10 Score=114.87 Aligned_cols=101 Identities=7% Similarity=0.086 Sum_probs=78.1
Q ss_pred hcCCCCEEEEEcCccchHHHHHhcCCCCCceEEEEeCChHHHHHHHHHHhhhhhcccccCCCCCCCccEEEEEcCccc--
Q 002218 710 KESCATTLVDFGCGSGSLLDSLLDYPTALEKIVGVDISQKSLSRAAKIIHSKLSKKLDAAVPCTDVKSAVLFDGSITV-- 787 (952)
Q Consensus 710 ~~~k~krVLDIGCGeG~ll~~LAr~g~~~~qVVGVDISeemLe~ArkrLsa~la~~~~~l~Pr~~~~nVtf~qGDa~d-- 787 (952)
...++.+|||+|||+|.++..|++..+ ..+|+|+|+|+.+++.|+++.. .. .++.++.+|+.+
T Consensus 71 ~~~~~~~VLDlGcG~G~~~~~la~~~~-~~~v~gvD~s~~~~~~a~~~~~-------------~~-~~v~~~~~d~~~~~ 135 (230)
T 1fbn_A 71 PIKRDSKILYLGASAGTTPSHVADIAD-KGIVYAIEYAPRIMRELLDACA-------------ER-ENIIPILGDANKPQ 135 (230)
T ss_dssp CCCTTCEEEEESCCSSHHHHHHHHHTT-TSEEEEEESCHHHHHHHHHHTT-------------TC-TTEEEEECCTTCGG
T ss_pred CCCCCCEEEEEcccCCHHHHHHHHHcC-CcEEEEEECCHHHHHHHHHHhh-------------cC-CCeEEEECCCCCcc
Confidence 334678999999999999999998742 3699999999999999987642 12 589999999988
Q ss_pred --cCCCCCCccEEEEccccccCCh-hHHHHHHHHHHHccCCC-EEEEE
Q 002218 788 --FDSRLHGFDIGTCLEVIEHMEE-DEASQFGNIVLSSFRPR-ILIVS 831 (952)
Q Consensus 788 --Lpf~d~sFDVVVcieVIEHL~d-D~l~~L~eeI~RvLKPG-~LIIS 831 (952)
+++. ..||+|+ ++++. +....+.+++.++|||| .+++.
T Consensus 136 ~~~~~~-~~~D~v~-----~~~~~~~~~~~~l~~~~~~LkpgG~l~i~ 177 (230)
T 1fbn_A 136 EYANIV-EKVDVIY-----EDVAQPNQAEILIKNAKWFLKKGGYGMIA 177 (230)
T ss_dssp GGTTTS-CCEEEEE-----ECCCSTTHHHHHHHHHHHHEEEEEEEEEE
T ss_pred cccccC-ccEEEEE-----EecCChhHHHHHHHHHHHhCCCCcEEEEE
Confidence 6655 7899998 44442 23345556799999999 55554
No 166
>3q87_B N6 adenine specific DNA methylase; SAM-methyltransferase, methyltransferase, methylation, trans activator-transferase complex; HET: SAM; 2.00A {Encephalitozoon cuniculi}
Probab=99.07 E-value=3.4e-10 Score=110.51 Aligned_cols=96 Identities=13% Similarity=0.189 Sum_probs=74.8
Q ss_pred CCCCEEEEEcCccchHHHHHhcCCCCCceEEEEeCChHHHHHHHHHHhhhhhcccccCCCCCCCccEEEEEcCccccCCC
Q 002218 712 SCATTLVDFGCGSGSLLDSLLDYPTALEKIVGVDISQKSLSRAAKIIHSKLSKKLDAAVPCTDVKSAVLFDGSITVFDSR 791 (952)
Q Consensus 712 ~k~krVLDIGCGeG~ll~~LAr~g~~~~qVVGVDISeemLe~ArkrLsa~la~~~~~l~Pr~~~~nVtf~qGDa~dLpf~ 791 (952)
.++.+|||+|||+|.++..+++.+ +|+|+|+|+.|++. . .++++.++|+.+ +..
T Consensus 22 ~~~~~vLD~GcG~G~~~~~l~~~~----~v~gvD~s~~~~~~-----~----------------~~~~~~~~d~~~-~~~ 75 (170)
T 3q87_B 22 LEMKIVLDLGTSTGVITEQLRKRN----TVVSTDLNIRALES-----H----------------RGGNLVRADLLC-SIN 75 (170)
T ss_dssp CCSCEEEEETCTTCHHHHHHTTTS----EEEEEESCHHHHHT-----C----------------SSSCEEECSTTT-TBC
T ss_pred CCCCeEEEeccCccHHHHHHHhcC----cEEEEECCHHHHhc-----c----------------cCCeEEECChhh-hcc
Confidence 567899999999999999999865 89999999999987 1 257899999987 445
Q ss_pred CCCccEEEEccccccCChh-------HHHHHHHHHHHccCCC-EEEEEecC
Q 002218 792 LHGFDIGTCLEVIEHMEED-------EASQFGNIVLSSFRPR-ILIVSTPN 834 (952)
Q Consensus 792 d~sFDVVVcieVIEHL~dD-------~l~~L~eeI~RvLKPG-~LIISTPN 834 (952)
++.||+|++...+++.++. ....+.+.+.+.+ || .+++.++.
T Consensus 76 ~~~fD~i~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~l-pgG~l~~~~~~ 125 (170)
T 3q87_B 76 QESVDVVVFNPPYVPDTDDPIIGGGYLGREVIDRFVDAV-TVGMLYLLVIE 125 (170)
T ss_dssp GGGCSEEEECCCCBTTCCCTTTBCCGGGCHHHHHHHHHC-CSSEEEEEEEG
T ss_pred cCCCCEEEECCCCccCCccccccCCcchHHHHHHHHhhC-CCCEEEEEEec
Confidence 5899999999888876533 1223334577777 87 77776654
No 167
>2gpy_A O-methyltransferase; structural genomics, PSI, protein structure initiative, NEW research center for structural genomics, nysgxrc; HET: MSE; 1.90A {Bacillus halodurans}
Probab=99.07 E-value=3.6e-10 Score=114.35 Aligned_cols=120 Identities=13% Similarity=0.143 Sum_probs=89.0
Q ss_pred hHHHHHHHHHHHhhcCCCCEEEEEcCccchHHHHHhcCCCCCceEEEEeCChHHHHHHHHHHhhhhhcccccCCCCCCCc
Q 002218 697 LSKQRVEYALQHIKESCATTLVDFGCGSGSLLDSLLDYPTALEKIVGVDISQKSLSRAAKIIHSKLSKKLDAAVPCTDVK 776 (952)
Q Consensus 697 L~~QR~efVldlL~~~k~krVLDIGCGeG~ll~~LAr~g~~~~qVVGVDISeemLe~ArkrLsa~la~~~~~l~Pr~~~~ 776 (952)
.......++...+...++.+|||+|||+|.++..+++.. +..+|+|+|+++.+++.|++++... ....
T Consensus 38 ~~~~~~~~l~~~~~~~~~~~vLdiG~G~G~~~~~la~~~-~~~~v~~vD~~~~~~~~a~~~~~~~-----------~~~~ 105 (233)
T 2gpy_A 38 MDLLGMESLLHLLKMAAPARILEIGTAIGYSAIRMAQAL-PEATIVSIERDERRYEEAHKHVKAL-----------GLES 105 (233)
T ss_dssp CCHHHHHHHHHHHHHHCCSEEEEECCTTSHHHHHHHHHC-TTCEEEEECCCHHHHHHHHHHHHHT-----------TCTT
T ss_pred cCHHHHHHHHHHHhccCCCEEEEecCCCcHHHHHHHHHC-CCCEEEEEECCHHHHHHHHHHHHHc-----------CCCC
Confidence 344444556666666678899999999999999999874 2379999999999999999876531 1123
Q ss_pred cEEEEEcCcccc-CCC--CCCccEEEEccccccCChhHHHHHHHHHHHccCCC-EEEEEec
Q 002218 777 SAVLFDGSITVF-DSR--LHGFDIGTCLEVIEHMEEDEASQFGNIVLSSFRPR-ILIVSTP 833 (952)
Q Consensus 777 nVtf~qGDa~dL-pf~--d~sFDVVVcieVIEHL~dD~l~~L~eeI~RvLKPG-~LIISTP 833 (952)
++++.++|+.+. +.. .+.||+|++....+ +. ..+.+.+.++|+|| .+++.+.
T Consensus 106 ~v~~~~~d~~~~~~~~~~~~~fD~I~~~~~~~----~~-~~~l~~~~~~L~pgG~lv~~~~ 161 (233)
T 2gpy_A 106 RIELLFGDALQLGEKLELYPLFDVLFIDAAKG----QY-RRFFDMYSPMVRPGGLILSDNV 161 (233)
T ss_dssp TEEEECSCGGGSHHHHTTSCCEEEEEEEGGGS----CH-HHHHHHHGGGEEEEEEEEEETT
T ss_pred cEEEEECCHHHHHHhcccCCCccEEEECCCHH----HH-HHHHHHHHHHcCCCeEEEEEcC
Confidence 699999999874 322 47899999977654 22 34456799999999 6666543
No 168
>2ipx_A RRNA 2'-O-methyltransferase fibrillarin; FBL, structural genomics, structural genomics consortium, SGC; HET: MTA; 1.82A {Homo sapiens}
Probab=99.07 E-value=3.3e-10 Score=114.85 Aligned_cols=105 Identities=10% Similarity=0.080 Sum_probs=79.4
Q ss_pred cCCCCEEEEEcCccchHHHHHhcCCCCCceEEEEeCChHHHHHHHHHHhhhhhcccccCCCCCCCccEEEEEcCccc---
Q 002218 711 ESCATTLVDFGCGSGSLLDSLLDYPTALEKIVGVDISQKSLSRAAKIIHSKLSKKLDAAVPCTDVKSAVLFDGSITV--- 787 (952)
Q Consensus 711 ~~k~krVLDIGCGeG~ll~~LAr~g~~~~qVVGVDISeemLe~ArkrLsa~la~~~~~l~Pr~~~~nVtf~qGDa~d--- 787 (952)
..++.+|||+|||+|.++..|++..++..+|+|+|+|+.+++.+.++... . .++++.++|+.+
T Consensus 75 ~~~~~~vLDlG~G~G~~~~~la~~~g~~~~v~gvD~s~~~i~~~~~~a~~-------------~-~~v~~~~~d~~~~~~ 140 (233)
T 2ipx_A 75 IKPGAKVLYLGAASGTTVSHVSDIVGPDGLVYAVEFSHRSGRDLINLAKK-------------R-TNIIPVIEDARHPHK 140 (233)
T ss_dssp CCTTCEEEEECCTTSHHHHHHHHHHCTTCEEEEECCCHHHHHHHHHHHHH-------------C-TTEEEECSCTTCGGG
T ss_pred CCCCCEEEEEcccCCHHHHHHHHHhCCCcEEEEEECCHHHHHHHHHHhhc-------------c-CCeEEEEcccCChhh
Confidence 34678999999999999999998632236999999999988877665431 1 479999999987
Q ss_pred cCCCCCCccEEEEccccccCChhHHHHHHHHHHHccCCC-EEEEEec
Q 002218 788 FDSRLHGFDIGTCLEVIEHMEEDEASQFGNIVLSSFRPR-ILIVSTP 833 (952)
Q Consensus 788 Lpf~d~sFDVVVcieVIEHL~dD~l~~L~eeI~RvLKPG-~LIISTP 833 (952)
++.....||+|++... ..+....+..++.++|||| .++++.+
T Consensus 141 ~~~~~~~~D~V~~~~~----~~~~~~~~~~~~~~~LkpgG~l~i~~~ 183 (233)
T 2ipx_A 141 YRMLIAMVDVIFADVA----QPDQTRIVALNAHTFLRNGGHFVISIK 183 (233)
T ss_dssp GGGGCCCEEEEEECCC----CTTHHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred hcccCCcEEEEEEcCC----CccHHHHHHHHHHHHcCCCeEEEEEEc
Confidence 3445678999998544 3344455566799999999 6666554
No 169
>1r18_A Protein-L-isoaspartate(D-aspartate)-O-methyltrans; methyltransferase, isomerization, protein repair, S-adenosyl homocysteine; HET: SAH; 2.20A {Drosophila melanogaster} SCOP: c.66.1.7
Probab=99.07 E-value=3.2e-10 Score=114.50 Aligned_cols=116 Identities=16% Similarity=0.214 Sum_probs=85.1
Q ss_pred HHHHHhh--cCCCCEEEEEcCccchHHHHHhcCCCC-----CceEEEEeCChHHHHHHHHHHhhhhhcccccCCCCCCCc
Q 002218 704 YALQHIK--ESCATTLVDFGCGSGSLLDSLLDYPTA-----LEKIVGVDISQKSLSRAAKIIHSKLSKKLDAAVPCTDVK 776 (952)
Q Consensus 704 fVldlL~--~~k~krVLDIGCGeG~ll~~LAr~g~~-----~~qVVGVDISeemLe~ArkrLsa~la~~~~~l~Pr~~~~ 776 (952)
.+.+.+. ..++.+|||||||+|.++..+++..+. ..+|+|+|+++.+++.|++++....... ....
T Consensus 73 ~~~~~l~~~~~~~~~VLdiG~G~G~~~~~la~~~~~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~-------~~~~ 145 (227)
T 1r18_A 73 FALEYLRDHLKPGARILDVGSGSGYLTACFYRYIKAKGVDADTRIVGIEHQAELVRRSKANLNTDDRSM-------LDSG 145 (227)
T ss_dssp HHHHHTTTTCCTTCEEEEESCTTSHHHHHHHHHHHHSCCCTTCEEEEEESCHHHHHHHHHHHHHHHHHH-------HHHT
T ss_pred HHHHHHHhhCCCCCEEEEECCCccHHHHHHHHhcccccCCccCEEEEEEcCHHHHHHHHHHHHhcCccc-------cCCC
Confidence 3444442 346789999999999999998874310 1489999999999999998765321000 0024
Q ss_pred cEEEEEcCccccCCCCCCccEEEEccccccCChhHHHHHHHHHHHccCCC-EEEEEecC
Q 002218 777 SAVLFDGSITVFDSRLHGFDIGTCLEVIEHMEEDEASQFGNIVLSSFRPR-ILIVSTPN 834 (952)
Q Consensus 777 nVtf~qGDa~dLpf~d~sFDVVVcieVIEHL~dD~l~~L~eeI~RvLKPG-~LIISTPN 834 (952)
++++.++|+.+.....+.||+|++..+++|+. +++.+.|||| .+++++..
T Consensus 146 ~v~~~~~d~~~~~~~~~~fD~I~~~~~~~~~~--------~~~~~~LkpgG~lvi~~~~ 196 (227)
T 1r18_A 146 QLLIVEGDGRKGYPPNAPYNAIHVGAAAPDTP--------TELINQLASGGRLIVPVGP 196 (227)
T ss_dssp SEEEEESCGGGCCGGGCSEEEEEECSCBSSCC--------HHHHHTEEEEEEEEEEESC
T ss_pred ceEEEECCcccCCCcCCCccEEEECCchHHHH--------HHHHHHhcCCCEEEEEEec
Confidence 79999999987322237899999999999987 4588999999 77777654
No 170
>2avd_A Catechol-O-methyltransferase; structural genomics, structural genomics consortium, SGC; HET: SAM; 1.70A {Homo sapiens} SCOP: c.66.1.1
Probab=99.06 E-value=1.1e-09 Score=109.77 Aligned_cols=115 Identities=15% Similarity=0.063 Sum_probs=83.2
Q ss_pred HHHHHHHHhhcCCCCEEEEEcCccchHHHHHhcCCCCCceEEEEeCChHHHHHHHHHHhhhhhcccccCCCCCCCccEEE
Q 002218 701 RVEYALQHIKESCATTLVDFGCGSGSLLDSLLDYPTALEKIVGVDISQKSLSRAAKIIHSKLSKKLDAAVPCTDVKSAVL 780 (952)
Q Consensus 701 R~efVldlL~~~k~krVLDIGCGeG~ll~~LAr~g~~~~qVVGVDISeemLe~ArkrLsa~la~~~~~l~Pr~~~~nVtf 780 (952)
...++..++...++.+|||||||+|.++..+++..++..+|+|+|+++.+++.|++++... ....++++
T Consensus 57 ~~~~l~~l~~~~~~~~vLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~-----------g~~~~i~~ 125 (229)
T 2avd_A 57 QAQLLANLARLIQAKKALDLGTFTGYSALALALALPADGRVVTCEVDAQPPELGRPLWRQA-----------EAEHKIDL 125 (229)
T ss_dssp HHHHHHHHHHHTTCCEEEEECCTTSHHHHHHHTTSCTTCEEEEEESCSHHHHHHHHHHHHT-----------TCTTTEEE
T ss_pred HHHHHHHHHHhcCCCEEEEEcCCccHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHC-----------CCCCeEEE
Confidence 3345555555567889999999999999999986422479999999999999999876531 12247999
Q ss_pred EEcCccccCC--C--C--CCccEEEEccccccCChhHHHHHHHHHHHccCCC-EEEEE
Q 002218 781 FDGSITVFDS--R--L--HGFDIGTCLEVIEHMEEDEASQFGNIVLSSFRPR-ILIVS 831 (952)
Q Consensus 781 ~qGDa~dLpf--~--d--~sFDVVVcieVIEHL~dD~l~~L~eeI~RvLKPG-~LIIS 831 (952)
.++|+.+... . . +.||+|++... . .....+.+.+.++|+|| .+++.
T Consensus 126 ~~~d~~~~~~~~~~~~~~~~~D~v~~d~~----~-~~~~~~l~~~~~~L~pgG~lv~~ 178 (229)
T 2avd_A 126 RLKPALETLDELLAAGEAGTFDVAVVDAD----K-ENCSAYYERCLQLLRPGGILAVL 178 (229)
T ss_dssp EESCHHHHHHHHHHTTCTTCEEEEEECSC----S-TTHHHHHHHHHHHEEEEEEEEEE
T ss_pred EEcCHHHHHHHHHhcCCCCCccEEEECCC----H-HHHHHHHHHHHHHcCCCeEEEEE
Confidence 9999865421 1 1 68999998544 2 22234556799999999 55554
No 171
>2vdv_E TRNA (guanine-N(7)-)-methyltransferase; S-adenosyl-L-methionine, phosphorylation, M7G, spout MT, tRNA processing; HET: SAM; 2.30A {Saccharomyces cerevisiae} PDB: 2vdu_E
Probab=99.06 E-value=3e-10 Score=116.69 Aligned_cols=118 Identities=12% Similarity=0.097 Sum_probs=84.5
Q ss_pred CCCEEEEEcCccchHHHHHhcCCCCCceEEEEeCChHHHHHHHHHHhhhhhcccccCCCCCCCccEEEEEcCccc-cC--
Q 002218 713 CATTLVDFGCGSGSLLDSLLDYPTALEKIVGVDISQKSLSRAAKIIHSKLSKKLDAAVPCTDVKSAVLFDGSITV-FD-- 789 (952)
Q Consensus 713 k~krVLDIGCGeG~ll~~LAr~g~~~~qVVGVDISeemLe~ArkrLsa~la~~~~~l~Pr~~~~nVtf~qGDa~d-Lp-- 789 (952)
++.+|||||||+|.++..+++.+ +..+|+|||+|+.+++.|++++....... ....+..+++++++|+.+ ++
T Consensus 49 ~~~~vLDiGcG~G~~~~~la~~~-~~~~v~gvD~s~~~l~~a~~~~~~~~~~~----~~~~~~~nv~~~~~D~~~~l~~~ 123 (246)
T 2vdv_E 49 KKVTIADIGCGFGGLMIDLSPAF-PEDLILGMEIRVQVTNYVEDRIIALRNNT----ASKHGFQNINVLRGNAMKFLPNF 123 (246)
T ss_dssp CCEEEEEETCTTSHHHHHHHHHS-TTSEEEEEESCHHHHHHHHHHHHHHHHTC-----CCSTTTTEEEEECCTTSCGGGT
T ss_pred CCCEEEEEcCCCCHHHHHHHHhC-CCCCEEEEEcCHHHHHHHHHHHHHHhhcc----ccccCCCcEEEEeccHHHHHHHh
Confidence 56799999999999999999876 34689999999999999988765321100 000134589999999987 55
Q ss_pred CCCCCccEEEEccccccCChhHH-----------HHHHHHHHHccCCC-EEEEEecCCchhHH
Q 002218 790 SRLHGFDIGTCLEVIEHMEEDEA-----------SQFGNIVLSSFRPR-ILIVSTPNYEYNAI 840 (952)
Q Consensus 790 f~d~sFDVVVcieVIEHL~dD~l-----------~~L~eeI~RvLKPG-~LIISTPN~efN~l 840 (952)
+..+.+|.|+... ++... ..+.+++.++|+|| .+++.|.+.++...
T Consensus 124 ~~~~~~d~v~~~~-----p~p~~k~~~~~~r~~~~~~l~~~~~~LkpgG~l~~~td~~~~~~~ 181 (246)
T 2vdv_E 124 FEKGQLSKMFFCF-----PDPHFKQRKHKARIITNTLLSEYAYVLKEGGVVYTITDVKDLHEW 181 (246)
T ss_dssp SCTTCEEEEEEES-----CCCC------CSSCCCHHHHHHHHHHEEEEEEEEEEESCHHHHHH
T ss_pred ccccccCEEEEEC-----CCcccccchhHHhhccHHHHHHHHHHcCCCCEEEEEeccHHHHHH
Confidence 5577899987532 32210 24556799999999 77777776555443
No 172
>3b3j_A Histone-arginine methyltransferase CARM1; protein arginine methyltransferase 4, APO catalytic domain, regulator, mRNA processing; 2.55A {Rattus norvegicus}
Probab=99.06 E-value=5.6e-10 Score=127.46 Aligned_cols=112 Identities=18% Similarity=0.148 Sum_probs=86.4
Q ss_pred HHHHHhhcCCCCEEEEEcCccchHHHHHhcCCCCCceEEEEeCChHHHHHHHHHHhhhhhcccccCCCCCCCccEEEEEc
Q 002218 704 YALQHIKESCATTLVDFGCGSGSLLDSLLDYPTALEKIVGVDISQKSLSRAAKIIHSKLSKKLDAAVPCTDVKSAVLFDG 783 (952)
Q Consensus 704 fVldlL~~~k~krVLDIGCGeG~ll~~LAr~g~~~~qVVGVDISeemLe~ArkrLsa~la~~~~~l~Pr~~~~nVtf~qG 783 (952)
.+.+.+...++.+|||||||+|.++..+++.+. .+|+|+|+|+ +++.|++++... +...+++++++
T Consensus 149 ~il~~l~~~~~~~VLDiGcGtG~la~~la~~~~--~~V~gvD~s~-~l~~A~~~~~~~-----------gl~~~v~~~~~ 214 (480)
T 3b3j_A 149 AILQNHTDFKDKIVLDVGCGSGILSFFAAQAGA--RKIYAVEAST-MAQHAEVLVKSN-----------NLTDRIVVIPG 214 (480)
T ss_dssp HHHHTGGGTTTCEEEEESCSTTHHHHHHHHTTC--SEEEEEECHH-HHHHHHHHHHHT-----------TCTTTEEEEES
T ss_pred HHHHhhhhcCCCEEEEecCcccHHHHHHHHcCC--CEEEEEEcHH-HHHHHHHHHHHc-----------CCCCcEEEEEC
Confidence 345555555778999999999999999998753 6999999998 999998876431 12247999999
Q ss_pred CccccCCCCCCccEEEEccccccCChhHHHHHHHHHHHccCCC-EEEE
Q 002218 784 SITVFDSRLHGFDIGTCLEVIEHMEEDEASQFGNIVLSSFRPR-ILIV 830 (952)
Q Consensus 784 Da~dLpf~d~sFDVVVcieVIEHL~dD~l~~L~eeI~RvLKPG-~LII 830 (952)
|+.+++.+ ++||+|++..+++|+..+........+.++|||| .+++
T Consensus 215 d~~~~~~~-~~fD~Ivs~~~~~~~~~e~~~~~l~~~~~~LkpgG~li~ 261 (480)
T 3b3j_A 215 KVEEVSLP-EQVDIIISEPMGYMLFNERMLESYLHAKKYLKPSGNMFP 261 (480)
T ss_dssp CTTTCCCS-SCEEEEECCCCHHHHTCHHHHHHHHHGGGGEEEEEEEES
T ss_pred chhhCccC-CCeEEEEEeCchHhcCcHHHHHHHHHHHHhcCCCCEEEE
Confidence 99987654 5899999988888887554433444689999999 5543
No 173
>4a6d_A Hydroxyindole O-methyltransferase; melatonin, circadian clock; HET: SAM; 2.40A {Homo sapiens} PDB: 4a6e_A*
Probab=99.06 E-value=1.9e-09 Score=117.57 Aligned_cols=112 Identities=16% Similarity=0.166 Sum_probs=88.4
Q ss_pred HHHHhhcCCCCEEEEEcCccchHHHHHhcCCCCCceEEEEeCChHHHHHHHHHHhhhhhcccccCCCCCCCccEEEEEcC
Q 002218 705 ALQHIKESCATTLVDFGCGSGSLLDSLLDYPTALEKIVGVDISQKSLSRAAKIIHSKLSKKLDAAVPCTDVKSAVLFDGS 784 (952)
Q Consensus 705 VldlL~~~k~krVLDIGCGeG~ll~~LAr~g~~~~qVVGVDISeemLe~ArkrLsa~la~~~~~l~Pr~~~~nVtf~qGD 784 (952)
+.+.+......+|||||||.|.++..+++.. +..+++..|. +.+++.|++++.. ....+|++..+|
T Consensus 171 ~~~~~~~~~~~~v~DvGgG~G~~~~~l~~~~-p~~~~~~~dl-p~v~~~a~~~~~~------------~~~~rv~~~~gD 236 (353)
T 4a6d_A 171 VLTAFDLSVFPLMCDLGGGAGALAKECMSLY-PGCKITVFDI-PEVVWTAKQHFSF------------QEEEQIDFQEGD 236 (353)
T ss_dssp HHHSSCGGGCSEEEEETCTTSHHHHHHHHHC-SSCEEEEEEC-HHHHHHHHHHSCC--------------CCSEEEEESC
T ss_pred HHHhcCcccCCeEEeeCCCCCHHHHHHHHhC-CCceeEeccC-HHHHHHHHHhhhh------------cccCceeeecCc
Confidence 3333344566899999999999999999887 4578999996 8899999876431 234689999999
Q ss_pred ccccCCCCCCccEEEEccccccCChhHHHHHHHHHHHccCCC-EEEEEe
Q 002218 785 ITVFDSRLHGFDIGTCLEVIEHMEEDEASQFGNIVLSSFRPR-ILIVST 832 (952)
Q Consensus 785 a~dLpf~d~sFDVVVcieVIEHL~dD~l~~L~eeI~RvLKPG-~LIIST 832 (952)
+.+.+. .++|+|++..+||++++++...+.+++++.|+|| .++|..
T Consensus 237 ~~~~~~--~~~D~~~~~~vlh~~~d~~~~~iL~~~~~al~pgg~lli~e 283 (353)
T 4a6d_A 237 FFKDPL--PEADLYILARVLHDWADGKCSHLLERIYHTCKPGGGILVIE 283 (353)
T ss_dssp TTTSCC--CCCSEEEEESSGGGSCHHHHHHHHHHHHHHCCTTCEEEEEE
T ss_pred cccCCC--CCceEEEeeeecccCCHHHHHHHHHHHHhhCCCCCEEEEEE
Confidence 976543 4689999999999999887777778899999998 666644
No 174
>1ej0_A FTSJ; methyltransferase, adoMet, adenosyl methionine, heat shock proteins, 23S ribosomal RNA; HET: SAM; 1.50A {Escherichia coli} SCOP: c.66.1.2 PDB: 1eiz_A*
Probab=99.05 E-value=3.7e-10 Score=106.13 Aligned_cols=103 Identities=11% Similarity=0.021 Sum_probs=79.9
Q ss_pred cCCCCEEEEEcCccchHHHHHhcCCCCCceEEEEeCChHHHHHHHHHHhhhhhcccccCCCCCCCccEEEEEcCccccC-
Q 002218 711 ESCATTLVDFGCGSGSLLDSLLDYPTALEKIVGVDISQKSLSRAAKIIHSKLSKKLDAAVPCTDVKSAVLFDGSITVFD- 789 (952)
Q Consensus 711 ~~k~krVLDIGCGeG~ll~~LAr~g~~~~qVVGVDISeemLe~ArkrLsa~la~~~~~l~Pr~~~~nVtf~qGDa~dLp- 789 (952)
..++.+|||+|||+|.++..+++..++..+++|+|+++ +++. .++++.++|+.+.+
T Consensus 20 ~~~~~~vLd~G~G~G~~~~~l~~~~~~~~~v~~~D~~~-~~~~----------------------~~~~~~~~d~~~~~~ 76 (180)
T 1ej0_A 20 FKPGMTVVDLGAAPGGWSQYVVTQIGGKGRIIACDLLP-MDPI----------------------VGVDFLQGDFRDELV 76 (180)
T ss_dssp CCTTCEEEEESCTTCHHHHHHHHHHCTTCEEEEEESSC-CCCC----------------------TTEEEEESCTTSHHH
T ss_pred CCCCCeEEEeCCCCCHHHHHHHHHhCCCCeEEEEECcc-cccc----------------------CcEEEEEcccccchh
Confidence 34678999999999999999988721337999999998 6422 26889999998876
Q ss_pred -------CCCCCccEEEEccccccCChhH---H------HHHHHHHHHccCCC-EEEEEecCCc
Q 002218 790 -------SRLHGFDIGTCLEVIEHMEEDE---A------SQFGNIVLSSFRPR-ILIVSTPNYE 836 (952)
Q Consensus 790 -------f~d~sFDVVVcieVIEHL~dD~---l------~~L~eeI~RvLKPG-~LIISTPN~e 836 (952)
+..+.||+|++..++++..... . ..+.+++.++|+|| .+++.+++.+
T Consensus 77 ~~~~~~~~~~~~~D~i~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~gG~l~~~~~~~~ 140 (180)
T 1ej0_A 77 MKALLERVGDSKVQVVMSDMAPNMSGTPAVDIPRAMYLVELALEMCRDVLAPGGSFVVKVFQGE 140 (180)
T ss_dssp HHHHHHHHTTCCEEEEEECCCCCCCSCHHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEEEESST
T ss_pred hhhhhccCCCCceeEEEECCCccccCCCccchHHHHHHHHHHHHHHHHHcCCCcEEEEEEecCC
Confidence 5678999999998888776331 1 35556799999998 7777777654
No 175
>3g89_A Ribosomal RNA small subunit methyltransferase G; 16S rRNA methyltransferase, translation, cytoplasm, rRNA processing; HET: HIC SAM AMP; 1.50A {Thermus thermophilus} PDB: 3g88_A* 3g8a_A* 3g8b_A*
Probab=99.05 E-value=3.1e-10 Score=118.34 Aligned_cols=101 Identities=16% Similarity=0.155 Sum_probs=79.5
Q ss_pred CCCCEEEEEcCccchHHHHHhcCCCCCceEEEEeCChHHHHHHHHHHhhhhhcccccCCCCCCCccEEEEEcCccccCCC
Q 002218 712 SCATTLVDFGCGSGSLLDSLLDYPTALEKIVGVDISQKSLSRAAKIIHSKLSKKLDAAVPCTDVKSAVLFDGSITVFDSR 791 (952)
Q Consensus 712 ~k~krVLDIGCGeG~ll~~LAr~g~~~~qVVGVDISeemLe~ArkrLsa~la~~~~~l~Pr~~~~nVtf~qGDa~dLpf~ 791 (952)
.++.+|||||||+|..+..|+... +..+|+|||+|+.+++.|+++.... +..+++++++|+.+++..
T Consensus 79 ~~~~~vLDiG~G~G~~~i~la~~~-~~~~v~~vD~s~~~~~~a~~~~~~~------------~l~~v~~~~~d~~~~~~~ 145 (249)
T 3g89_A 79 QGPLRVLDLGTGAGFPGLPLKIVR-PELELVLVDATRKKVAFVERAIEVL------------GLKGARALWGRAEVLARE 145 (249)
T ss_dssp CSSCEEEEETCTTTTTHHHHHHHC-TTCEEEEEESCHHHHHHHHHHHHHH------------TCSSEEEEECCHHHHTTS
T ss_pred CCCCEEEEEcCCCCHHHHHHHHHC-CCCEEEEEECCHHHHHHHHHHHHHh------------CCCceEEEECcHHHhhcc
Confidence 356899999999999999998764 3479999999999999999876532 334799999999988753
Q ss_pred ---CCCccEEEEccccccCChhHHHHHHHHHHHccCCC-EEEEE
Q 002218 792 ---LHGFDIGTCLEVIEHMEEDEASQFGNIVLSSFRPR-ILIVS 831 (952)
Q Consensus 792 ---d~sFDVVVcieVIEHL~dD~l~~L~eeI~RvLKPG-~LIIS 831 (952)
.+.||+|++..+ . ....+.+.+.++|||| .+++.
T Consensus 146 ~~~~~~fD~I~s~a~----~--~~~~ll~~~~~~LkpgG~l~~~ 183 (249)
T 3g89_A 146 AGHREAYARAVARAV----A--PLCVLSELLLPFLEVGGAAVAM 183 (249)
T ss_dssp TTTTTCEEEEEEESS----C--CHHHHHHHHGGGEEEEEEEEEE
T ss_pred cccCCCceEEEECCc----C--CHHHHHHHHHHHcCCCeEEEEE
Confidence 478999999754 1 1245667799999999 55543
No 176
>1g8a_A Fibrillarin-like PRE-rRNA processing protein; rRNA binding, RNA binding, structural genomics, BSGC structure funded by NIH; 1.40A {Pyrococcus horikoshii} SCOP: c.66.1.3 PDB: 2nnw_B 3nmu_F* 3nvk_I* 3nvm_B 1pry_A
Probab=99.04 E-value=6.3e-10 Score=111.95 Aligned_cols=104 Identities=14% Similarity=0.125 Sum_probs=78.3
Q ss_pred cCCCCEEEEEcCccchHHHHHhcCCCCCceEEEEeCChHHHHHHHHHHhhhhhcccccCCCCCCCccEEEEEcCccccC-
Q 002218 711 ESCATTLVDFGCGSGSLLDSLLDYPTALEKIVGVDISQKSLSRAAKIIHSKLSKKLDAAVPCTDVKSAVLFDGSITVFD- 789 (952)
Q Consensus 711 ~~k~krVLDIGCGeG~ll~~LAr~g~~~~qVVGVDISeemLe~ArkrLsa~la~~~~~l~Pr~~~~nVtf~qGDa~dLp- 789 (952)
..++.+|||+|||+|.++..+++..++..+|+|+|+|+.+++.++++... . .++++.++|+.+..
T Consensus 71 ~~~~~~vLDlG~G~G~~~~~la~~~~~~~~v~~vD~s~~~~~~~~~~~~~-------------~-~~v~~~~~d~~~~~~ 136 (227)
T 1g8a_A 71 IKPGKSVLYLGIASGTTASHVSDIVGWEGKIFGIEFSPRVLRELVPIVEE-------------R-RNIVPILGDATKPEE 136 (227)
T ss_dssp CCTTCEEEEETTTSTTHHHHHHHHHCTTSEEEEEESCHHHHHHHHHHHSS-------------C-TTEEEEECCTTCGGG
T ss_pred CCCCCEEEEEeccCCHHHHHHHHHhCCCeEEEEEECCHHHHHHHHHHHhc-------------c-CCCEEEEccCCCcch
Confidence 44678999999999999999997621236999999999999999876531 1 58999999998742
Q ss_pred --CCCCCccEEEEccccccCChhHHHHHHHHHHHccCCC-EEEEEe
Q 002218 790 --SRLHGFDIGTCLEVIEHMEEDEASQFGNIVLSSFRPR-ILIVST 832 (952)
Q Consensus 790 --f~d~sFDVVVcieVIEHL~dD~l~~L~eeI~RvLKPG-~LIIST 832 (952)
....+||+|++... .++....+..++.++|||| .+++..
T Consensus 137 ~~~~~~~~D~v~~~~~----~~~~~~~~l~~~~~~LkpgG~l~~~~ 178 (227)
T 1g8a_A 137 YRALVPKVDVIFEDVA----QPTQAKILIDNAEVYLKRGGYGMIAV 178 (227)
T ss_dssp GTTTCCCEEEEEECCC----STTHHHHHHHHHHHHEEEEEEEEEEE
T ss_pred hhcccCCceEEEECCC----CHhHHHHHHHHHHHhcCCCCEEEEEE
Confidence 12358999997544 2344455456799999999 555553
No 177
>2yvl_A TRMI protein, hypothetical protein; tRNA, methyltransferase, S-adenosylmethionine, structural GE NPPSFA; HET: SAM; 2.20A {Aquifex aeolicus}
Probab=99.04 E-value=1.1e-09 Score=110.70 Aligned_cols=117 Identities=15% Similarity=0.118 Sum_probs=89.5
Q ss_pred HHHHHHHHHHhhcCCCCEEEEEcCccchHHHHHhcCCCCCceEEEEeCChHHHHHHHHHHhhhhhcccccCCCCCCCccE
Q 002218 699 KQRVEYALQHIKESCATTLVDFGCGSGSLLDSLLDYPTALEKIVGVDISQKSLSRAAKIIHSKLSKKLDAAVPCTDVKSA 778 (952)
Q Consensus 699 ~QR~efVldlL~~~k~krVLDIGCGeG~ll~~LAr~g~~~~qVVGVDISeemLe~ArkrLsa~la~~~~~l~Pr~~~~nV 778 (952)
..-...+.+.+...++.+|||+|||+|.++..+++.+ .+|+|+|+++.+++.|+++.... ....++
T Consensus 77 ~~~~~~~~~~~~~~~~~~vldiG~G~G~~~~~l~~~~---~~v~~vD~~~~~~~~a~~~~~~~-----------~~~~~~ 142 (248)
T 2yvl_A 77 PKDSFYIALKLNLNKEKRVLEFGTGSGALLAVLSEVA---GEVWTFEAVEEFYKTAQKNLKKF-----------NLGKNV 142 (248)
T ss_dssp HHHHHHHHHHTTCCTTCEEEEECCTTSHHHHHHHHHS---SEEEEECSCHHHHHHHHHHHHHT-----------TCCTTE
T ss_pred chhHHHHHHhcCCCCCCEEEEeCCCccHHHHHHHHhC---CEEEEEecCHHHHHHHHHHHHHc-----------CCCCcE
Confidence 3334466666766778899999999999999998874 79999999999999998876431 112479
Q ss_pred EEEEcCccccCCCCCCccEEEEccccccCChhHHHHHHHHHHHccCCC-EEEEEecCCc
Q 002218 779 VLFDGSITVFDSRLHGFDIGTCLEVIEHMEEDEASQFGNIVLSSFRPR-ILIVSTPNYE 836 (952)
Q Consensus 779 tf~qGDa~dLpf~d~sFDVVVcieVIEHL~dD~l~~L~eeI~RvLKPG-~LIISTPN~e 836 (952)
++.++|+.+......+||+|++ +.+ +.... .+++.++|+|| .+++.+|+.+
T Consensus 143 ~~~~~d~~~~~~~~~~~D~v~~-----~~~-~~~~~-l~~~~~~L~~gG~l~~~~~~~~ 194 (248)
T 2yvl_A 143 KFFNVDFKDAEVPEGIFHAAFV-----DVR-EPWHY-LEKVHKSLMEGAPVGFLLPTAN 194 (248)
T ss_dssp EEECSCTTTSCCCTTCBSEEEE-----CSS-CGGGG-HHHHHHHBCTTCEEEEEESSHH
T ss_pred EEEEcChhhcccCCCcccEEEE-----CCc-CHHHH-HHHHHHHcCCCCEEEEEeCCHH
Confidence 9999999886535678999997 333 22233 35699999998 8888888753
No 178
>3giw_A Protein of unknown function DUF574; rossmann-fold protein, structural genomics, joint center for structural genomics, JCSG; HET: MSE UNL; 1.45A {Streptomyces avermitilis} PDB: 3go4_A*
Probab=99.04 E-value=6.9e-10 Score=119.18 Aligned_cols=114 Identities=16% Similarity=0.194 Sum_probs=82.4
Q ss_pred CCCCEEEEEcCcc--chHHHHHhcCCCCCceEEEEeCChHHHHHHHHHHhhhhhcccccCCCCCCCccEEEEEcCccccC
Q 002218 712 SCATTLVDFGCGS--GSLLDSLLDYPTALEKIVGVDISQKSLSRAAKIIHSKLSKKLDAAVPCTDVKSAVLFDGSITVFD 789 (952)
Q Consensus 712 ~k~krVLDIGCGe--G~ll~~LAr~g~~~~qVVGVDISeemLe~ArkrLsa~la~~~~~l~Pr~~~~nVtf~qGDa~dLp 789 (952)
....+|||||||. +.++..+++...+..+|+|||+|+.||+.|++++.. ....+++|+++|+.+++
T Consensus 77 ~g~~q~LDLGcG~pT~~~~~~la~~~~P~arVv~VD~sp~mLa~Ar~~l~~------------~~~~~~~~v~aD~~~~~ 144 (277)
T 3giw_A 77 AGIRQFLDIGTGIPTSPNLHEIAQSVAPESRVVYVDNDPIVLTLSQGLLAS------------TPEGRTAYVEADMLDPA 144 (277)
T ss_dssp SCCCEEEEESCCSCCSSCHHHHHHHHCTTCEEEEEECCHHHHHTTHHHHCC------------CSSSEEEEEECCTTCHH
T ss_pred cCCCEEEEeCCCCCcccHHHHHHHHHCCCCEEEEEeCChHHHHHHHHHhcc------------CCCCcEEEEEecccChh
Confidence 3557999999997 444444443212348999999999999999887631 11247999999998863
Q ss_pred C----C--CCCcc-----EEEEccccccCChhH-HHHHHHHHHHccCCC-EEEEEecCCch
Q 002218 790 S----R--LHGFD-----IGTCLEVIEHMEEDE-ASQFGNIVLSSFRPR-ILIVSTPNYEY 837 (952)
Q Consensus 790 f----~--d~sFD-----VVVcieVIEHL~dD~-l~~L~eeI~RvLKPG-~LIISTPN~ef 837 (952)
. . ...|| +|+++.+|||+++++ ...+.+.+.+.|+|| .+++++...++
T Consensus 145 ~~l~~~~~~~~~D~~~p~av~~~avLH~l~d~~~p~~~l~~l~~~L~PGG~Lvls~~~~d~ 205 (277)
T 3giw_A 145 SILDAPELRDTLDLTRPVALTVIAIVHFVLDEDDAVGIVRRLLEPLPSGSYLAMSIGTAEF 205 (277)
T ss_dssp HHHTCHHHHTTCCTTSCCEEEEESCGGGSCGGGCHHHHHHHHHTTSCTTCEEEEEEECCTT
T ss_pred hhhcccccccccCcCCcchHHhhhhHhcCCchhhHHHHHHHHHHhCCCCcEEEEEeccCCC
Confidence 1 1 24455 688999999999654 234445799999999 88888766554
No 179
>1ixk_A Methyltransferase; open beta sheet; 1.90A {Pyrococcus horikoshii} SCOP: c.66.1.38
Probab=99.03 E-value=6.2e-10 Score=119.86 Aligned_cols=119 Identities=18% Similarity=0.167 Sum_probs=88.3
Q ss_pred HHHHHhhcCCCCEEEEEcCccchHHHHHhcCCCCCceEEEEeCChHHHHHHHHHHhhhhhcccccCCCCCCCccEEEEEc
Q 002218 704 YALQHIKESCATTLVDFGCGSGSLLDSLLDYPTALEKIVGVDISQKSLSRAAKIIHSKLSKKLDAAVPCTDVKSAVLFDG 783 (952)
Q Consensus 704 fVldlL~~~k~krVLDIGCGeG~ll~~LAr~g~~~~qVVGVDISeemLe~ArkrLsa~la~~~~~l~Pr~~~~nVtf~qG 783 (952)
.+...+...++.+|||+|||+|..+..|++..+...+|+|+|+++.+++.+++++.. .+..++++.++
T Consensus 109 l~~~~l~~~~g~~VLDlg~G~G~~t~~la~~~~~~~~v~avD~s~~~l~~a~~~~~~------------~g~~~v~~~~~ 176 (315)
T 1ixk_A 109 YPPVALDPKPGEIVADMAAAPGGKTSYLAQLMRNDGVIYAFDVDENRLRETRLNLSR------------LGVLNVILFHS 176 (315)
T ss_dssp HHHHHHCCCTTCEEEECCSSCSHHHHHHHHHTTTCSEEEEECSCHHHHHHHHHHHHH------------HTCCSEEEESS
T ss_pred HHHHHhCCCCCCEEEEeCCCCCHHHHHHHHHhCCCCEEEEEcCCHHHHHHHHHHHHH------------hCCCeEEEEEC
Confidence 445556666788999999999999999987532237899999999999999988753 23447999999
Q ss_pred CccccCCCCCCccEEEE------ccccccCCh-------h-------HHHHHHHHHHHccCCC-EEEEEecC
Q 002218 784 SITVFDSRLHGFDIGTC------LEVIEHMEE-------D-------EASQFGNIVLSSFRPR-ILIVSTPN 834 (952)
Q Consensus 784 Da~dLpf~d~sFDVVVc------ieVIEHL~d-------D-------~l~~L~eeI~RvLKPG-~LIISTPN 834 (952)
|+.+++...+.||+|++ ..++.+.++ + ....+.+++.++|||| .++++|..
T Consensus 177 D~~~~~~~~~~fD~Il~d~Pcsg~g~~~~~p~~~~~~~~~~~~~~~~~q~~~L~~~~~~LkpGG~lv~stcs 248 (315)
T 1ixk_A 177 SSLHIGELNVEFDKILLDAPCTGSGTIHKNPERKWNRTMDDIKFCQGLQMRLLEKGLEVLKPGGILVYSTCS 248 (315)
T ss_dssp CGGGGGGGCCCEEEEEEECCTTSTTTCC--------CCHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEEESC
T ss_pred ChhhcccccccCCEEEEeCCCCCcccccCChhHhhcCCHHHHHHHHHHHHHHHHHHHHhCCCCCEEEEEeCC
Confidence 99987765678999998 344544331 1 1135566799999998 77777654
No 180
>3bzb_A Uncharacterized protein; RED ALGA, protein structure initiat center for eukaryotic structural genomics, CESG, structural genomics; 2.79A {Cyanidioschyzon merolae}
Probab=99.03 E-value=1.6e-09 Score=114.31 Aligned_cols=122 Identities=11% Similarity=0.096 Sum_probs=85.0
Q ss_pred HHHHHHHHHHHhhcCCCCEEEEEcCccchHHHHHhcCCCCCceEEEEeC-ChHHHHHHHHHHhhhhhcccccCCCCCCC-
Q 002218 698 SKQRVEYALQHIKESCATTLVDFGCGSGSLLDSLLDYPTALEKIVGVDI-SQKSLSRAAKIIHSKLSKKLDAAVPCTDV- 775 (952)
Q Consensus 698 ~~QR~efVldlL~~~k~krVLDIGCGeG~ll~~LAr~g~~~~qVVGVDI-SeemLe~ArkrLsa~la~~~~~l~Pr~~~- 775 (952)
.....+++.+.....++.+|||||||+|.++..+++.+. .+|+|+|+ |+.+++.|+++....... ..+.
T Consensus 64 ~~~l~~~l~~~~~~~~~~~vLDlG~G~G~~~~~~a~~~~--~~v~~~D~s~~~~~~~a~~n~~~N~~~-------~~~~~ 134 (281)
T 3bzb_A 64 ARALADTLCWQPELIAGKTVCELGAGAGLVSIVAFLAGA--DQVVATDYPDPEILNSLESNIREHTAN-------SCSSE 134 (281)
T ss_dssp HHHHHHHHHHCGGGTTTCEEEETTCTTSHHHHHHHHTTC--SEEEEEECSCHHHHHHHHHHHHTTCC-------------
T ss_pred HHHHHHHHHhcchhcCCCeEEEecccccHHHHHHHHcCC--CEEEEEeCCCHHHHHHHHHHHHHhhhh-------hcccc
Confidence 444555666655555778999999999999999998862 49999999 899999999876311000 1111
Q ss_pred ----ccEEEEEcCccccC--C----CCCCccEEEEccccccCChhHHHHHHHHHHHccC---C--C-EEEE
Q 002218 776 ----KSAVLFDGSITVFD--S----RLHGFDIGTCLEVIEHMEEDEASQFGNIVLSSFR---P--R-ILIV 830 (952)
Q Consensus 776 ----~nVtf~qGDa~dLp--f----~d~sFDVVVcieVIEHL~dD~l~~L~eeI~RvLK---P--G-~LII 830 (952)
.++++...+..+.. . ....||+|++.++++|.+ +. ..+.+.+.++|+ | | .+++
T Consensus 135 ~~~~~~v~~~~~~~~~~~~~~~~~~~~~~fD~Ii~~dvl~~~~-~~-~~ll~~l~~~Lk~~~p~~gG~l~v 203 (281)
T 3bzb_A 135 TVKRASPKVVPYRWGDSPDSLQRCTGLQRFQVVLLADLLSFHQ-AH-DALLRSVKMLLALPANDPTAVALV 203 (281)
T ss_dssp ----CCCEEEECCTTSCTHHHHHHHSCSSBSEEEEESCCSCGG-GH-HHHHHHHHHHBCCTTTCTTCEEEE
T ss_pred cCCCCCeEEEEecCCCccHHHHhhccCCCCCEEEEeCcccChH-HH-HHHHHHHHHHhcccCCCCCCEEEE
Confidence 26777766544321 1 257899999999999976 33 345567999999 8 7 4444
No 181
>1wy7_A Hypothetical protein PH1948; seven-stranded beta sheet, methyltransferase fold, structura genomics, transferase; HET: SAH; 2.20A {Pyrococcus horikoshii} SCOP: c.66.1.32
Probab=99.03 E-value=3.8e-09 Score=104.39 Aligned_cols=102 Identities=13% Similarity=0.180 Sum_probs=78.6
Q ss_pred hcCCCCEEEEEcCccchHHHHHhcCCCCCceEEEEeCChHHHHHHHHHHhhhhhcccccCCCCCCCccEEEEEcCccccC
Q 002218 710 KESCATTLVDFGCGSGSLLDSLLDYPTALEKIVGVDISQKSLSRAAKIIHSKLSKKLDAAVPCTDVKSAVLFDGSITVFD 789 (952)
Q Consensus 710 ~~~k~krVLDIGCGeG~ll~~LAr~g~~~~qVVGVDISeemLe~ArkrLsa~la~~~~~l~Pr~~~~nVtf~qGDa~dLp 789 (952)
...++.+|||+|||+|.++..+++.+. .+|+|+|+|+.+++.|++++.. .+. +++++++|+.+++
T Consensus 46 ~~~~~~~vlD~g~G~G~~~~~l~~~~~--~~v~~vD~~~~~~~~a~~~~~~------------~~~-~~~~~~~d~~~~~ 110 (207)
T 1wy7_A 46 GDIEGKVVADLGAGTGVLSYGALLLGA--KEVICVEVDKEAVDVLIENLGE------------FKG-KFKVFIGDVSEFN 110 (207)
T ss_dssp TSSTTCEEEEETCTTCHHHHHHHHTTC--SEEEEEESCHHHHHHHHHHTGG------------GTT-SEEEEESCGGGCC
T ss_pred CCCCcCEEEEeeCCCCHHHHHHHHcCC--CEEEEEECCHHHHHHHHHHHHH------------cCC-CEEEEECchHHcC
Confidence 345678999999999999999998862 5899999999999999887542 122 7999999998874
Q ss_pred CCCCCccEEEEccccccCChhHHHHHHHHHHHccCCC-EEEEE
Q 002218 790 SRLHGFDIGTCLEVIEHMEEDEASQFGNIVLSSFRPR-ILIVS 831 (952)
Q Consensus 790 f~d~sFDVVVcieVIEHL~dD~l~~L~eeI~RvLKPG-~LIIS 831 (952)
..||+|++.-.+++........+.+.+.+++ | .+++.
T Consensus 111 ---~~~D~v~~~~p~~~~~~~~~~~~l~~~~~~l--~~~~~~~ 148 (207)
T 1wy7_A 111 ---SRVDIVIMNPPFGSQRKHADRPFLLKAFEIS--DVVYSIH 148 (207)
T ss_dssp ---CCCSEEEECCCCSSSSTTTTHHHHHHHHHHC--SEEEEEE
T ss_pred ---CCCCEEEEcCCCccccCCchHHHHHHHHHhc--CcEEEEE
Confidence 4899999988777765333345556788888 6 44333
No 182
>3bwc_A Spermidine synthase; SAM, SGPP, structura genomics, PSI, protein structure initiative, structural GEN pathogenic protozoa consortium; HET: MSE SAM; 2.30A {Trypanosoma cruzi} PDB: 3bwb_A*
Probab=99.01 E-value=1e-09 Score=117.55 Aligned_cols=113 Identities=16% Similarity=0.116 Sum_probs=80.6
Q ss_pred CCCCEEEEEcCccchHHHHHhcCCCCCceEEEEeCChHHHHHHHHHHhhhhhcccccCCCCCCCccEEEEEcCccccCC-
Q 002218 712 SCATTLVDFGCGSGSLLDSLLDYPTALEKIVGVDISQKSLSRAAKIIHSKLSKKLDAAVPCTDVKSAVLFDGSITVFDS- 790 (952)
Q Consensus 712 ~k~krVLDIGCGeG~ll~~LAr~g~~~~qVVGVDISeemLe~ArkrLsa~la~~~~~l~Pr~~~~nVtf~qGDa~dLpf- 790 (952)
.++.+|||||||+|.++..+++.. +..+|+|||+|+.+++.|++++...... ...++++++.+|+.++..
T Consensus 94 ~~~~~VLdiG~G~G~~~~~l~~~~-~~~~v~~vDid~~~i~~a~~~~~~~~~~--------~~~~~v~~~~~D~~~~~~~ 164 (304)
T 3bwc_A 94 PKPERVLIIGGGDGGVLREVLRHG-TVEHCDLVDIDGEVMEQSKQHFPQISRS--------LADPRATVRVGDGLAFVRQ 164 (304)
T ss_dssp SSCCEEEEEECTTSHHHHHHHTCT-TCCEEEEEESCHHHHHHHHHHCHHHHGG--------GGCTTEEEEESCHHHHHHS
T ss_pred CCCCeEEEEcCCCCHHHHHHHhCC-CCCEEEEEECCHHHHHHHHHHhHHhhcc--------cCCCcEEEEECcHHHHHHh
Confidence 456899999999999999999874 3479999999999999999876321100 123579999999988654
Q ss_pred -CCCCccEEEEccccccCChhHH--HHHHHHHHHccCCC-EEEEEec
Q 002218 791 -RLHGFDIGTCLEVIEHMEEDEA--SQFGNIVLSSFRPR-ILIVSTP 833 (952)
Q Consensus 791 -~d~sFDVVVcieVIEHL~dD~l--~~L~eeI~RvLKPG-~LIISTP 833 (952)
..++||+|++.....+.+...+ ..+.+.+.++|||| .+++..+
T Consensus 165 ~~~~~fDvIi~d~~~~~~~~~~l~~~~~l~~~~~~LkpgG~lv~~~~ 211 (304)
T 3bwc_A 165 TPDNTYDVVIIDTTDPAGPASKLFGEAFYKDVLRILKPDGICCNQGE 211 (304)
T ss_dssp SCTTCEEEEEEECC---------CCHHHHHHHHHHEEEEEEEEEEEC
T ss_pred ccCCceeEEEECCCCccccchhhhHHHHHHHHHHhcCCCcEEEEecC
Confidence 3678999999665544332222 35567899999999 6666544
No 183
>1nv8_A HEMK protein; class I adoMet-dependent methyltransferase; HET: SAM MEQ; 2.20A {Thermotoga maritima} SCOP: c.66.1.30 PDB: 1nv9_A* 1vq1_A* 1sg9_A*
Probab=99.01 E-value=2.4e-09 Score=113.82 Aligned_cols=124 Identities=19% Similarity=0.235 Sum_probs=89.1
Q ss_pred hhHHHHHHHHHHHhhcCCCCEEEEEcCccchHHHHHhcCCCCCceEEEEeCChHHHHHHHHHHhhhhhcccccCCCCCCC
Q 002218 696 PLSKQRVEYALQHIKESCATTLVDFGCGSGSLLDSLLDYPTALEKIVGVDISQKSLSRAAKIIHSKLSKKLDAAVPCTDV 775 (952)
Q Consensus 696 PL~~QR~efVldlL~~~k~krVLDIGCGeG~ll~~LAr~g~~~~qVVGVDISeemLe~ArkrLsa~la~~~~~l~Pr~~~ 775 (952)
|.....++.+.+.+...++.+|||+|||+|.++..+++. +..+|+|+|+|+.+++.|++++... +.
T Consensus 106 ~~te~lv~~~l~~~~~~~~~~vLDlG~GsG~~~~~la~~--~~~~v~~vDis~~al~~A~~n~~~~------------~l 171 (284)
T 1nv8_A 106 PETEELVELALELIRKYGIKTVADIGTGSGAIGVSVAKF--SDAIVFATDVSSKAVEIARKNAERH------------GV 171 (284)
T ss_dssp TTHHHHHHHHHHHHHHHTCCEEEEESCTTSHHHHHHHHH--SSCEEEEEESCHHHHHHHHHHHHHT------------TC
T ss_pred hhHHHHHHHHHHHhcccCCCEEEEEeCchhHHHHHHHHC--CCCEEEEEECCHHHHHHHHHHHHHc------------CC
Confidence 444555666666665456689999999999999999887 2379999999999999999876531 22
Q ss_pred c-cEEEEEcCccccCCCCCCc---cEEEEc------------cccccCChhHH------HHHHHHHH-HccCCC-EEEEE
Q 002218 776 K-SAVLFDGSITVFDSRLHGF---DIGTCL------------EVIEHMEEDEA------SQFGNIVL-SSFRPR-ILIVS 831 (952)
Q Consensus 776 ~-nVtf~qGDa~dLpf~d~sF---DVVVci------------eVIEHL~dD~l------~~L~eeI~-RvLKPG-~LIIS 831 (952)
. +++++++|+.+.. . +.| |+|++. ++. |-+...+ ..+.+.+. +.|+|| .+++.
T Consensus 172 ~~~v~~~~~D~~~~~-~-~~f~~~D~IvsnPPyi~~~~~l~~~v~-~ep~~al~~~~dgl~~~~~i~~~~l~pgG~l~~e 248 (284)
T 1nv8_A 172 SDRFFVRKGEFLEPF-K-EKFASIEMILSNPPYVKSSAHLPKDVL-FEPPEALFGGEDGLDFYREFFGRYDTSGKIVLME 248 (284)
T ss_dssp TTSEEEEESSTTGGG-G-GGTTTCCEEEECCCCBCGGGSCTTSCC-CSCHHHHBCTTTSCHHHHHHHHHCCCTTCEEEEE
T ss_pred CCceEEEECcchhhc-c-cccCCCCEEEEcCCCCCcccccChhhc-cCcHHHhcCCCcHHHHHHHHHHhcCCCCCEEEEE
Confidence 2 5999999998742 2 478 999996 333 4432111 13455788 999998 77776
Q ss_pred ecCCc
Q 002218 832 TPNYE 836 (952)
Q Consensus 832 TPN~e 836 (952)
.+...
T Consensus 249 ~~~~q 253 (284)
T 1nv8_A 249 IGEDQ 253 (284)
T ss_dssp CCTTC
T ss_pred ECchH
Confidence 66543
No 184
>3cbg_A O-methyltransferase; cyanobacterium; HET: SAH FER 4FE; 2.00A {Synechocystis SP}
Probab=99.01 E-value=2.7e-09 Score=109.04 Aligned_cols=115 Identities=13% Similarity=0.072 Sum_probs=82.7
Q ss_pred HHHHHHhhcCCCCEEEEEcCccchHHHHHhcCCCCCceEEEEeCChHHHHHHHHHHhhhhhcccccCCCCCCCccEEEEE
Q 002218 703 EYALQHIKESCATTLVDFGCGSGSLLDSLLDYPTALEKIVGVDISQKSLSRAAKIIHSKLSKKLDAAVPCTDVKSAVLFD 782 (952)
Q Consensus 703 efVldlL~~~k~krVLDIGCGeG~ll~~LAr~g~~~~qVVGVDISeemLe~ArkrLsa~la~~~~~l~Pr~~~~nVtf~q 782 (952)
.++..++...++.+|||||||+|..+..+++..++..+|+|+|+++.+++.|++++... ....++++.+
T Consensus 62 ~~l~~l~~~~~~~~vLdiG~G~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~-----------g~~~~i~~~~ 130 (232)
T 3cbg_A 62 QFLGLLISLTGAKQVLEIGVFRGYSALAMALQLPPDGQIIACDQDPNATAIAKKYWQKA-----------GVAEKISLRL 130 (232)
T ss_dssp HHHHHHHHHHTCCEEEEECCTTSHHHHHHHTTSCTTCEEEEEESCHHHHHHHHHHHHHH-----------TCGGGEEEEE
T ss_pred HHHHHHHHhcCCCEEEEecCCCCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHc-----------CCCCcEEEEE
Confidence 34444444457789999999999999999987422479999999999999999876531 1124699999
Q ss_pred cCcccc----CCCC--CCccEEEEccccccCChhHHHHHHHHHHHccCCC-EEEEEec
Q 002218 783 GSITVF----DSRL--HGFDIGTCLEVIEHMEEDEASQFGNIVLSSFRPR-ILIVSTP 833 (952)
Q Consensus 783 GDa~dL----pf~d--~sFDVVVcieVIEHL~dD~l~~L~eeI~RvLKPG-~LIISTP 833 (952)
+|+.+. +..+ +.||+|++....+ + ...+.+.+.++|+|| .+++...
T Consensus 131 ~d~~~~l~~l~~~~~~~~fD~V~~d~~~~----~-~~~~l~~~~~~LkpgG~lv~~~~ 183 (232)
T 3cbg_A 131 GPALATLEQLTQGKPLPEFDLIFIDADKR----N-YPRYYEIGLNLLRRGGLMVIDNV 183 (232)
T ss_dssp SCHHHHHHHHHTSSSCCCEEEEEECSCGG----G-HHHHHHHHHHTEEEEEEEEEECT
T ss_pred cCHHHHHHHHHhcCCCCCcCEEEECCCHH----H-HHHHHHHHHHHcCCCeEEEEeCC
Confidence 997552 2223 7899999765422 2 234556799999999 6665443
No 185
>1zg3_A Isoflavanone 4'-O-methyltransferase; rossman fold, plant Pro transferase; HET: 2HI SAH; 2.35A {Medicago truncatula} PDB: 1zga_A* 1zhf_A* 1zgj_A*
Probab=99.00 E-value=1.1e-09 Score=118.73 Aligned_cols=99 Identities=12% Similarity=0.095 Sum_probs=80.2
Q ss_pred CCCCEEEEEcCccchHHHHHhcCCCCCceEEEEeCChHHHHHHHHHHhhhhhcccccCCCCCCCccEEEEEcCccccCCC
Q 002218 712 SCATTLVDFGCGSGSLLDSLLDYPTALEKIVGVDISQKSLSRAAKIIHSKLSKKLDAAVPCTDVKSAVLFDGSITVFDSR 791 (952)
Q Consensus 712 ~k~krVLDIGCGeG~ll~~LAr~g~~~~qVVGVDISeemLe~ArkrLsa~la~~~~~l~Pr~~~~nVtf~qGDa~dLpf~ 791 (952)
.+..+|||||||+|.++..+++.. +..+++++|+ +.+++.|++ ..++++..+|+.+ +.+
T Consensus 192 ~~~~~vlDvG~G~G~~~~~l~~~~-p~~~~~~~D~-~~~~~~a~~------------------~~~v~~~~~d~~~-~~~ 250 (358)
T 1zg3_A 192 EGLESLVDVGGGTGGVTKLIHEIF-PHLKCTVFDQ-PQVVGNLTG------------------NENLNFVGGDMFK-SIP 250 (358)
T ss_dssp HTCSEEEEETCTTSHHHHHHHHHC-TTSEEEEEEC-HHHHSSCCC------------------CSSEEEEECCTTT-CCC
T ss_pred cCCCEEEEECCCcCHHHHHHHHHC-CCCeEEEecc-HHHHhhccc------------------CCCcEEEeCccCC-CCC
Confidence 356899999999999999999876 3468999999 688866532 1359999999987 544
Q ss_pred CCCccEEEEccccccCChhHHHHHHHHHHHccCC---C-EEEEEec
Q 002218 792 LHGFDIGTCLEVIEHMEEDEASQFGNIVLSSFRP---R-ILIVSTP 833 (952)
Q Consensus 792 d~sFDVVVcieVIEHL~dD~l~~L~eeI~RvLKP---G-~LIISTP 833 (952)
.||+|++..++||++++....+.+++.++|+| | .++|..+
T Consensus 251 --~~D~v~~~~vlh~~~d~~~~~~l~~~~~~L~p~~~gG~l~i~e~ 294 (358)
T 1zg3_A 251 --SADAVLLKWVLHDWNDEQSLKILKNSKEAISHKGKDGKVIIIDI 294 (358)
T ss_dssp --CCSEEEEESCGGGSCHHHHHHHHHHHHHHTGGGGGGCEEEEEEC
T ss_pred --CceEEEEcccccCCCHHHHHHHHHHHHHhCCCCCCCcEEEEEEe
Confidence 49999999999999976666777789999999 7 6666543
No 186
>2nxc_A L11 mtase, ribosomal protein L11 methyltransferase; transferase S-adenosly-L-methionine dependent methyltransfer posttranslational modification; 1.59A {Thermus thermophilus} SCOP: c.66.1.39 PDB: 1ufk_A 2nxe_A* 2nxj_A 2nxn_A 2zbp_A* 2zbq_A* 2zbr_A* 3cjq_A* 3cjr_A* 3cju_A* 3egv_A* 3cjt_A*
Probab=99.00 E-value=8.1e-10 Score=114.91 Aligned_cols=100 Identities=20% Similarity=0.240 Sum_probs=78.9
Q ss_pred CCCCEEEEEcCccchHHHHHhcCCCCCceEEEEeCChHHHHHHHHHHhhhhhcccccCCCCCCCccEEEEEcCccccCCC
Q 002218 712 SCATTLVDFGCGSGSLLDSLLDYPTALEKIVGVDISQKSLSRAAKIIHSKLSKKLDAAVPCTDVKSAVLFDGSITVFDSR 791 (952)
Q Consensus 712 ~k~krVLDIGCGeG~ll~~LAr~g~~~~qVVGVDISeemLe~ArkrLsa~la~~~~~l~Pr~~~~nVtf~qGDa~dLpf~ 791 (952)
.++.+|||+|||+|.++..+++.+ .+|+|+|+++.+++.|+++... .+.. +++.++|+.+. +.
T Consensus 119 ~~~~~VLDiGcG~G~l~~~la~~g---~~v~gvDi~~~~v~~a~~n~~~------------~~~~-v~~~~~d~~~~-~~ 181 (254)
T 2nxc_A 119 RPGDKVLDLGTGSGVLAIAAEKLG---GKALGVDIDPMVLPQAEANAKR------------NGVR-PRFLEGSLEAA-LP 181 (254)
T ss_dssp CTTCEEEEETCTTSHHHHHHHHTT---CEEEEEESCGGGHHHHHHHHHH------------TTCC-CEEEESCHHHH-GG
T ss_pred CCCCEEEEecCCCcHHHHHHHHhC---CeEEEEECCHHHHHHHHHHHHH------------cCCc-EEEEECChhhc-Cc
Confidence 467899999999999999999987 4999999999999999987642 1222 89999998763 33
Q ss_pred CCCccEEEEccccccCChhHHHHHHHHHHHccCCC-EEEEEec
Q 002218 792 LHGFDIGTCLEVIEHMEEDEASQFGNIVLSSFRPR-ILIVSTP 833 (952)
Q Consensus 792 d~sFDVVVcieVIEHL~dD~l~~L~eeI~RvLKPG-~LIISTP 833 (952)
...||+|++....+++ ..+.+.+.++|||| .++++.+
T Consensus 182 ~~~fD~Vv~n~~~~~~-----~~~l~~~~~~LkpgG~lils~~ 219 (254)
T 2nxc_A 182 FGPFDLLVANLYAELH-----AALAPRYREALVPGGRALLTGI 219 (254)
T ss_dssp GCCEEEEEEECCHHHH-----HHHHHHHHHHEEEEEEEEEEEE
T ss_pred CCCCCEEEECCcHHHH-----HHHHHHHHHHcCCCCEEEEEee
Confidence 5689999997655443 35556799999999 6666543
No 187
>2frn_A Hypothetical protein PH0793; structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; 2.10A {Pyrococcus horikoshii OT3} PDB: 3k6r_A 3a25_A* 3a26_A*
Probab=99.00 E-value=1.1e-09 Score=115.58 Aligned_cols=121 Identities=18% Similarity=0.126 Sum_probs=87.9
Q ss_pred hcCCchhHHHHHHHHHHHhhcCCCCEEEEEcCccchHHHHHhcCCCCCceEEEEeCChHHHHHHHHHHhhhhhcccccCC
Q 002218 691 ALFSPPLSKQRVEYALQHIKESCATTLVDFGCGSGSLLDSLLDYPTALEKIVGVDISQKSLSRAAKIIHSKLSKKLDAAV 770 (952)
Q Consensus 691 ~~F~PPL~~QR~efVldlL~~~k~krVLDIGCGeG~ll~~LAr~g~~~~qVVGVDISeemLe~ArkrLsa~la~~~~~l~ 770 (952)
.+|++....+|.. +.+.+ .++.+|||+|||+|.++..+++.+. .+|+|+|+|+.+++.|++++...
T Consensus 106 ~~f~~~~~~~~~~-l~~~~--~~~~~VLDlgcG~G~~~~~la~~~~--~~V~~vD~s~~~~~~a~~n~~~n--------- 171 (278)
T 2frn_A 106 IMFSPANVKERVR-MAKVA--KPDELVVDMFAGIGHLSLPIAVYGK--AKVIAIEKDPYTFKFLVENIHLN--------- 171 (278)
T ss_dssp SCCCGGGHHHHHH-HHHHC--CTTCEEEETTCTTTTTHHHHHHHTC--CEEEEECCCHHHHHHHHHHHHHT---------
T ss_pred eeEcCCcHHHHHH-HHHhC--CCCCEEEEecccCCHHHHHHHHhCC--CEEEEEECCHHHHHHHHHHHHHc---------
Confidence 4456665555543 33433 2578999999999999999999873 37999999999999999876521
Q ss_pred CCCCCccEEEEEcCccccCCCCCCccEEEEccccccCChhHHHHHHHHHHHccCCC-EEEEEecC
Q 002218 771 PCTDVKSAVLFDGSITVFDSRLHGFDIGTCLEVIEHMEEDEASQFGNIVLSSFRPR-ILIVSTPN 834 (952)
Q Consensus 771 Pr~~~~nVtf~qGDa~dLpf~d~sFDVVVcieVIEHL~dD~l~~L~eeI~RvLKPG-~LIISTPN 834 (952)
....+++++++|+.++.. ...||+|++... . .. ..+.+.+.++|||| .+++.+..
T Consensus 172 --~~~~~v~~~~~D~~~~~~-~~~fD~Vi~~~p----~-~~-~~~l~~~~~~LkpgG~l~~~~~~ 227 (278)
T 2frn_A 172 --KVEDRMSAYNMDNRDFPG-ENIADRILMGYV----V-RT-HEFIPKALSIAKDGAIIHYHNTV 227 (278)
T ss_dssp --TCTTTEEEECSCTTTCCC-CSCEEEEEECCC----S-SG-GGGHHHHHHHEEEEEEEEEEEEE
T ss_pred --CCCceEEEEECCHHHhcc-cCCccEEEECCc----h-hH-HHHHHHHHHHCCCCeEEEEEEee
Confidence 112259999999999876 678999988433 1 21 23445799999998 66665543
No 188
>2b25_A Hypothetical protein; structural genomics, methyl transferase, SAM, structural GEN consortium, SGC, transferase; HET: SAM; 2.50A {Homo sapiens} SCOP: c.66.1.13
Probab=98.99 E-value=1.5e-09 Score=116.51 Aligned_cols=126 Identities=13% Similarity=0.062 Sum_probs=88.0
Q ss_pred HHHHHHHHHHHhhcCCCCEEEEEcCccchHHHHHhcCCCCCceEEEEeCChHHHHHHHHHHhhhh-----hcccccCCCC
Q 002218 698 SKQRVEYALQHIKESCATTLVDFGCGSGSLLDSLLDYPTALEKIVGVDISQKSLSRAAKIIHSKL-----SKKLDAAVPC 772 (952)
Q Consensus 698 ~~QR~efVldlL~~~k~krVLDIGCGeG~ll~~LAr~g~~~~qVVGVDISeemLe~ArkrLsa~l-----a~~~~~l~Pr 772 (952)
++.....+++.+...++.+|||+|||+|.++..+++..++..+|+|+|+++.+++.|++++.... ... .
T Consensus 90 ~~~~~~~~l~~l~~~~g~~VLDiG~G~G~~~~~la~~~g~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~ln~~------~ 163 (336)
T 2b25_A 90 FPKDINMILSMMDINPGDTVLEAGSGSGGMSLFLSKAVGSQGRVISFEVRKDHHDLAKKNYKHWRDSWKLSHV------E 163 (336)
T ss_dssp CHHHHHHHHHHHTCCTTCEEEEECCTTSHHHHHHHHHHCTTCEEEEEESSHHHHHHHHHHHHHHHHHHTTTCS------S
T ss_pred CHHHHHHHHHhcCCCCCCEEEEeCCCcCHHHHHHHHHhCCCceEEEEeCCHHHHHHHHHHHHHhhcccccccc------c
Confidence 33344566677777788999999999999999999863244799999999999999998765321 000 0
Q ss_pred CCCccEEEEEcCcccc--CCCCCCccEEEEccccccCChhHHHHHHHHHHHccCCC-EEEEEecCCc
Q 002218 773 TDVKSAVLFDGSITVF--DSRLHGFDIGTCLEVIEHMEEDEASQFGNIVLSSFRPR-ILIVSTPNYE 836 (952)
Q Consensus 773 ~~~~nVtf~qGDa~dL--pf~d~sFDVVVcieVIEHL~dD~l~~L~eeI~RvLKPG-~LIISTPN~e 836 (952)
....++++.++|+.+. ++.++.||+|++.. +... .+.+++.++|+|| .+++.+|+.+
T Consensus 164 ~~~~~v~~~~~d~~~~~~~~~~~~fD~V~~~~-----~~~~--~~l~~~~~~LkpgG~lv~~~~~~~ 223 (336)
T 2b25_A 164 EWPDNVDFIHKDISGATEDIKSLTFDAVALDM-----LNPH--VTLPVFYPHLKHGGVCAVYVVNIT 223 (336)
T ss_dssp CCCCCEEEEESCTTCCC-------EEEEEECS-----SSTT--TTHHHHGGGEEEEEEEEEEESSHH
T ss_pred ccCCceEEEECChHHcccccCCCCeeEEEECC-----CCHH--HHHHHHHHhcCCCcEEEEEeCCHH
Confidence 1124799999999886 34566899999843 2111 1345799999999 7888888653
No 189
>1o54_A SAM-dependent O-methyltransferase; TM0748, structural genomi PSI, protein structure initiative, joint center for structu genomics; 1.65A {Thermotoga maritima} SCOP: c.66.1.13
Probab=98.98 E-value=1.5e-09 Score=113.23 Aligned_cols=119 Identities=10% Similarity=0.070 Sum_probs=90.4
Q ss_pred hHHHHHHHHHHHhhcCCCCEEEEEcCccchHHHHHhcCCCCCceEEEEeCChHHHHHHHHHHhhhhhcccccCCCCCCCc
Q 002218 697 LSKQRVEYALQHIKESCATTLVDFGCGSGSLLDSLLDYPTALEKIVGVDISQKSLSRAAKIIHSKLSKKLDAAVPCTDVK 776 (952)
Q Consensus 697 L~~QR~efVldlL~~~k~krVLDIGCGeG~ll~~LAr~g~~~~qVVGVDISeemLe~ArkrLsa~la~~~~~l~Pr~~~~ 776 (952)
+++.-...++..+...++.+|||+|||+|.++..+++..++..+|+|+|+++.+++.|++++... ....
T Consensus 96 ~~~~~~~~i~~~~~~~~~~~VLDiG~G~G~~~~~la~~~~~~~~v~~vD~s~~~~~~a~~~~~~~-----------~~~~ 164 (277)
T 1o54_A 96 VYPKDSSFIAMMLDVKEGDRIIDTGVGSGAMCAVLARAVGSSGKVFAYEKREEFAKLAESNLTKW-----------GLIE 164 (277)
T ss_dssp CCHHHHHHHHHHTTCCTTCEEEEECCTTSHHHHHHHHHTTTTCEEEEECCCHHHHHHHHHHHHHT-----------TCGG
T ss_pred cCHHHHHHHHHHhCCCCCCEEEEECCcCCHHHHHHHHHhCCCcEEEEEECCHHHHHHHHHHHHHc-----------CCCC
Confidence 44444557777777778889999999999999999887213479999999999999999876431 1124
Q ss_pred cEEEEEcCccccCCCCCCccEEEEccccccCChhHHHHHHHHHHHccCCC-EEEEEecC
Q 002218 777 SAVLFDGSITVFDSRLHGFDIGTCLEVIEHMEEDEASQFGNIVLSSFRPR-ILIVSTPN 834 (952)
Q Consensus 777 nVtf~qGDa~dLpf~d~sFDVVVcieVIEHL~dD~l~~L~eeI~RvLKPG-~LIISTPN 834 (952)
++++.++|+.+. +..+.||+|++ +++ +.. .+.+++.++|+|| .+++.+|.
T Consensus 165 ~v~~~~~d~~~~-~~~~~~D~V~~-----~~~-~~~-~~l~~~~~~L~pgG~l~~~~~~ 215 (277)
T 1o54_A 165 RVTIKVRDISEG-FDEKDVDALFL-----DVP-DPW-NYIDKCWEALKGGGRFATVCPT 215 (277)
T ss_dssp GEEEECCCGGGC-CSCCSEEEEEE-----CCS-CGG-GTHHHHHHHEEEEEEEEEEESS
T ss_pred CEEEEECCHHHc-ccCCccCEEEE-----CCc-CHH-HHHHHHHHHcCCCCEEEEEeCC
Confidence 799999999876 45578999998 334 232 3345799999999 78887775
No 190
>1sui_A Caffeoyl-COA O-methyltransferase; rossmann fold, protein-cofactor-substrate complex; HET: SAH FRE; 2.70A {Medicago sativa} SCOP: c.66.1.1 PDB: 1sus_A*
Probab=98.98 E-value=1.2e-09 Score=113.52 Aligned_cols=117 Identities=11% Similarity=0.066 Sum_probs=84.7
Q ss_pred HHHHHHHHHHhhcCCCCEEEEEcCccchHHHHHhcCCCCCceEEEEeCChHHHHHHHHHHhhhhhcccccCCCCCCCccE
Q 002218 699 KQRVEYALQHIKESCATTLVDFGCGSGSLLDSLLDYPTALEKIVGVDISQKSLSRAAKIIHSKLSKKLDAAVPCTDVKSA 778 (952)
Q Consensus 699 ~QR~efVldlL~~~k~krVLDIGCGeG~ll~~LAr~g~~~~qVVGVDISeemLe~ArkrLsa~la~~~~~l~Pr~~~~nV 778 (952)
+..-.++..++...++++|||||||+|..+..+++..++..+|+|+|+++.+++.|++++... ....++
T Consensus 65 ~~~~~ll~~l~~~~~~~~VLeiG~G~G~~~~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~-----------g~~~~i 133 (247)
T 1sui_A 65 ADEGQFLSMLLKLINAKNTMEIGVYTGYSLLATALAIPEDGKILAMDINKENYELGLPVIKKA-----------GVDHKI 133 (247)
T ss_dssp HHHHHHHHHHHHHTTCCEEEEECCGGGHHHHHHHHHSCTTCEEEEEESCCHHHHHHHHHHHHT-----------TCGGGE
T ss_pred HHHHHHHHHHHHhhCcCEEEEeCCCcCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHc-----------CCCCCe
Confidence 333344544555567889999999999999999886322479999999999999999877531 122479
Q ss_pred EEEEcCcccc-CCC------CCCccEEEEccccccCChhHHHHHHHHHHHccCCC-EEEEE
Q 002218 779 VLFDGSITVF-DSR------LHGFDIGTCLEVIEHMEEDEASQFGNIVLSSFRPR-ILIVS 831 (952)
Q Consensus 779 tf~qGDa~dL-pf~------d~sFDVVVcieVIEHL~dD~l~~L~eeI~RvLKPG-~LIIS 831 (952)
+++++|+.+. +.. .+.||+|++..... + ...+.+.+.++|||| .+++.
T Consensus 134 ~~~~gda~~~l~~l~~~~~~~~~fD~V~~d~~~~----~-~~~~l~~~~~~LkpGG~lv~d 189 (247)
T 1sui_A 134 DFREGPALPVLDEMIKDEKNHGSYDFIFVDADKD----N-YLNYHKRLIDLVKVGGVIGYD 189 (247)
T ss_dssp EEEESCHHHHHHHHHHSGGGTTCBSEEEECSCST----T-HHHHHHHHHHHBCTTCCEEEE
T ss_pred EEEECCHHHHHHHHHhccCCCCCEEEEEEcCchH----H-HHHHHHHHHHhCCCCeEEEEe
Confidence 9999999764 211 57899999864422 2 234556799999999 66554
No 191
>3gnl_A Uncharacterized protein, DUF633, LMOF2365_1472; structural genomics, PSI-2, protein structure initiative; 1.50A {Listeria monocytogenes str}
Probab=98.98 E-value=2.9e-09 Score=112.43 Aligned_cols=119 Identities=11% Similarity=0.044 Sum_probs=89.2
Q ss_pred HHHHHHHHHhhcCCCCEEEEEcCccchHHHHHhcCCCCCceEEEEeCChHHHHHHHHHHhhhhhcccccCCCCCCCccEE
Q 002218 700 QRVEYALQHIKESCATTLVDFGCGSGSLLDSLLDYPTALEKIVGVDISQKSLSRAAKIIHSKLSKKLDAAVPCTDVKSAV 779 (952)
Q Consensus 700 QR~efVldlL~~~k~krVLDIGCGeG~ll~~LAr~g~~~~qVVGVDISeemLe~ArkrLsa~la~~~~~l~Pr~~~~nVt 779 (952)
.|.+.+.+.+. ++.+|||||||+|.++..|++.+ +..+|+|+|+++.+++.|++++... +...+|+
T Consensus 10 ~RL~~i~~~v~--~g~~VlDIGtGsG~l~i~la~~~-~~~~V~avDi~~~al~~A~~N~~~~-----------gl~~~I~ 75 (244)
T 3gnl_A 10 KRLEKVASYIT--KNERIADIGSDHAYLPCFAVKNQ-TASFAIAGEVVDGPFQSAQKQVRSS-----------GLTEQID 75 (244)
T ss_dssp HHHHHHHTTCC--SSEEEEEETCSTTHHHHHHHHTT-SEEEEEEEESSHHHHHHHHHHHHHT-----------TCTTTEE
T ss_pred HHHHHHHHhCC--CCCEEEEECCccHHHHHHHHHhC-CCCEEEEEECCHHHHHHHHHHHHHc-----------CCCceEE
Confidence 57777877775 45799999999999999999986 4468999999999999999887532 1123699
Q ss_pred EEEcCccccCCCCCCccEEEEccccccCChhHHHHHHHHHHHccCCCEEEEEecCCc
Q 002218 780 LFDGSITVFDSRLHGFDIGTCLEVIEHMEEDEASQFGNIVLSSFRPRILIVSTPNYE 836 (952)
Q Consensus 780 f~qGDa~dLpf~d~sFDVVVcieVIEHL~dD~l~~L~eeI~RvLKPG~LIISTPN~e 836 (952)
+.++|+.+...+...||+|+...+ ..+....+.+.....|+++..+|..|+..
T Consensus 76 v~~gD~l~~~~~~~~~D~Iviagm----Gg~lI~~IL~~~~~~L~~~~~lIlq~~~~ 128 (244)
T 3gnl_A 76 VRKGNGLAVIEKKDAIDTIVIAGM----GGTLIRTILEEGAAKLAGVTKLILQPNIA 128 (244)
T ss_dssp EEECSGGGGCCGGGCCCEEEEEEE----CHHHHHHHHHHTGGGGTTCCEEEEEESSC
T ss_pred EEecchhhccCccccccEEEEeCC----chHHHHHHHHHHHHHhCCCCEEEEEcCCC
Confidence 999999887654446999986544 22334555567888999884444456644
No 192
>3lec_A NADB-rossmann superfamily protein; PSI, MCSG, structural genomics, midwest CENT structural genomics, protein structure initiative; 1.80A {Streptococcus agalactiae}
Probab=98.96 E-value=4.3e-09 Score=110.21 Aligned_cols=119 Identities=13% Similarity=0.021 Sum_probs=90.1
Q ss_pred HHHHHHHHHhhcCCCCEEEEEcCccchHHHHHhcCCCCCceEEEEeCChHHHHHHHHHHhhhhhcccccCCCCCCCccEE
Q 002218 700 QRVEYALQHIKESCATTLVDFGCGSGSLLDSLLDYPTALEKIVGVDISQKSLSRAAKIIHSKLSKKLDAAVPCTDVKSAV 779 (952)
Q Consensus 700 QR~efVldlL~~~k~krVLDIGCGeG~ll~~LAr~g~~~~qVVGVDISeemLe~ArkrLsa~la~~~~~l~Pr~~~~nVt 779 (952)
.|.+.+.+.+. ++.+|||||||+|.++..+++.+ +..+|+|+|+++.+++.|++++... +...+|+
T Consensus 10 ~RL~~i~~~v~--~g~~VlDIGtGsG~l~i~la~~~-~~~~V~AvDi~~~al~~A~~N~~~~-----------gl~~~I~ 75 (230)
T 3lec_A 10 KRLQKVANYVP--KGARLLDVGSDHAYLPIFLLQMG-YCDFAIAGEVVNGPYQSALKNVSEH-----------GLTSKID 75 (230)
T ss_dssp HHHHHHHTTSC--TTEEEEEETCSTTHHHHHHHHTT-CEEEEEEEESSHHHHHHHHHHHHHT-----------TCTTTEE
T ss_pred HHHHHHHHhCC--CCCEEEEECCchHHHHHHHHHhC-CCCEEEEEECCHHHHHHHHHHHHHc-----------CCCCcEE
Confidence 57788877775 46799999999999999999986 4578999999999999999887532 1223699
Q ss_pred EEEcCccccCCCCCCccEEEEccccccCChhHHHHHHHHHHHccCCCEEEEEecCCc
Q 002218 780 LFDGSITVFDSRLHGFDIGTCLEVIEHMEEDEASQFGNIVLSSFRPRILIVSTPNYE 836 (952)
Q Consensus 780 f~qGDa~dLpf~d~sFDVVVcieVIEHL~dD~l~~L~eeI~RvLKPG~LIISTPN~e 836 (952)
+.++|+.+...+...||+|+..++. .+....+.+.....|+++..+|..|+..
T Consensus 76 ~~~gD~l~~~~~~~~~D~IviaGmG----g~lI~~IL~~~~~~l~~~~~lIlqp~~~ 128 (230)
T 3lec_A 76 VRLANGLSAFEEADNIDTITICGMG----GRLIADILNNDIDKLQHVKTLVLQPNNR 128 (230)
T ss_dssp EEECSGGGGCCGGGCCCEEEEEEEC----HHHHHHHHHHTGGGGTTCCEEEEEESSC
T ss_pred EEECchhhccccccccCEEEEeCCc----hHHHHHHHHHHHHHhCcCCEEEEECCCC
Confidence 9999998876555579998765543 2334455566788899884455556644
No 193
>2ld4_A Anamorsin; methyltransferase-like fold, alpha/beta fold, iron-sulfur PR biogenesis, apoptosis; NMR {Homo sapiens} PDB: 2yui_A
Probab=98.96 E-value=8.1e-10 Score=106.95 Aligned_cols=89 Identities=15% Similarity=0.041 Sum_probs=71.2
Q ss_pred cCCCCEEEEEcCccchHHHHHhcCCCCCceEEEEeCChHHHHHHHHHHhhhhhcccccCCCCCCCccEEEEEcCccccCC
Q 002218 711 ESCATTLVDFGCGSGSLLDSLLDYPTALEKIVGVDISQKSLSRAAKIIHSKLSKKLDAAVPCTDVKSAVLFDGSITVFDS 790 (952)
Q Consensus 711 ~~k~krVLDIGCGeG~ll~~LAr~g~~~~qVVGVDISeemLe~ArkrLsa~la~~~~~l~Pr~~~~nVtf~qGDa~dLpf 790 (952)
..++.+|||||||. +++|+|+.|++.|+++.. .++++.++|+.++++
T Consensus 10 ~~~g~~vL~~~~g~-----------------v~vD~s~~ml~~a~~~~~----------------~~~~~~~~d~~~~~~ 56 (176)
T 2ld4_A 10 ISAGQFVAVVWDKS-----------------SPVEALKGLVDKLQALTG----------------NEGRVSVENIKQLLQ 56 (176)
T ss_dssp CCTTSEEEEEECTT-----------------SCHHHHHHHHHHHHHHTT----------------TTSEEEEEEGGGGGG
T ss_pred CCCCCEEEEecCCc-----------------eeeeCCHHHHHHHHHhcc----------------cCcEEEEechhcCcc
Confidence 34678999999985 238999999999987632 148999999999887
Q ss_pred ---CCCCccEEEEccccccCChhHHHHHHHHHHHccCCC-EEEEEec
Q 002218 791 ---RLHGFDIGTCLEVIEHMEEDEASQFGNIVLSSFRPR-ILIVSTP 833 (952)
Q Consensus 791 ---~d~sFDVVVcieVIEHL~dD~l~~L~eeI~RvLKPG-~LIISTP 833 (952)
.+++||+|+|..+++|+.++.... .+++.++|||| .+++..|
T Consensus 57 ~~~~~~~fD~V~~~~~l~~~~~~~~~~-l~~~~r~LkpgG~l~~~~~ 102 (176)
T 2ld4_A 57 SAHKESSFDIILSGLVPGSTTLHSAEI-LAEIARILRPGGCLFLKEP 102 (176)
T ss_dssp GCCCSSCEEEEEECCSTTCCCCCCHHH-HHHHHHHEEEEEEEEEEEE
T ss_pred ccCCCCCEeEEEECChhhhcccCHHHH-HHHHHHHCCCCEEEEEEcc
Confidence 688999999999999993244344 46799999999 7777555
No 194
>1u2z_A Histone-lysine N-methyltransferase, H3 lysine-79 specific; histone methyltransferase, nucleosome; HET: SAH; 2.20A {Saccharomyces cerevisiae} SCOP: c.66.1.31
Probab=98.95 E-value=1.9e-09 Score=121.99 Aligned_cols=117 Identities=13% Similarity=0.045 Sum_probs=83.5
Q ss_pred HHHHHHHHHHhhcCCCCEEEEEcCccchHHHHHhcCCCCCceEEEEeCChHHHHHH-------HHHHhhhhhcccccCCC
Q 002218 699 KQRVEYALQHIKESCATTLVDFGCGSGSLLDSLLDYPTALEKIVGVDISQKSLSRA-------AKIIHSKLSKKLDAAVP 771 (952)
Q Consensus 699 ~QR~efVldlL~~~k~krVLDIGCGeG~ll~~LAr~g~~~~qVVGVDISeemLe~A-------rkrLsa~la~~~~~l~P 771 (952)
...+..+++.+...++.+|||||||+|.++..+++..+ ..+|+|||+++.+++.| ++++..
T Consensus 228 p~~v~~ml~~l~l~~g~~VLDLGCGsG~la~~LA~~~g-~~~V~GVDis~~~l~~A~~Ml~~ar~~~~~----------- 295 (433)
T 1u2z_A 228 PNFLSDVYQQCQLKKGDTFMDLGSGVGNCVVQAALECG-CALSFGCEIMDDASDLTILQYEELKKRCKL----------- 295 (433)
T ss_dssp HHHHHHHHHHTTCCTTCEEEEESCTTSHHHHHHHHHHC-CSEEEEEECCHHHHHHHHHHHHHHHHHHHH-----------
T ss_pred HHHHHHHHHhcCCCCCCEEEEeCCCcCHHHHHHHHHCC-CCEEEEEeCCHHHHHHHHHhHHHHHHHHHH-----------
Confidence 34445566666667789999999999999999998532 25899999999999998 554432
Q ss_pred CCC--CccEEEEEcCcccc--CC--CCCCccEEEEccccccCChhHHHHHHHHHHHccCCC-EEEEE
Q 002218 772 CTD--VKSAVLFDGSITVF--DS--RLHGFDIGTCLEVIEHMEEDEASQFGNIVLSSFRPR-ILIVS 831 (952)
Q Consensus 772 r~~--~~nVtf~qGDa~dL--pf--~d~sFDVVVcieVIEHL~dD~l~~L~eeI~RvLKPG-~LIIS 831 (952)
.+ ..++++.++|.... ++ ....||+|++..++ +. ++....+ +++.++|||| .+++.
T Consensus 296 -~Gl~~~nV~~i~gD~~~~~~~~~~~~~~FDvIvvn~~l-~~-~d~~~~L-~el~r~LKpGG~lVi~ 358 (433)
T 1u2z_A 296 -YGMRLNNVEFSLKKSFVDNNRVAELIPQCDVILVNNFL-FD-EDLNKKV-EKILQTAKVGCKIISL 358 (433)
T ss_dssp -TTBCCCCEEEEESSCSTTCHHHHHHGGGCSEEEECCTT-CC-HHHHHHH-HHHHTTCCTTCEEEES
T ss_pred -cCCCCCceEEEEcCccccccccccccCCCCEEEEeCcc-cc-ccHHHHH-HHHHHhCCCCeEEEEe
Confidence 12 35899999865422 11 24689999987766 32 3443444 5799999999 55554
No 195
>3tm4_A TRNA (guanine N2-)-methyltransferase TRM14; rossmann fold, thump domain, tRNA methyltransferase; HET: SAM; 1.95A {Pyrococcus furiosus} PDB: 3tlj_A* 3tm5_A*
Probab=98.95 E-value=2e-09 Score=118.40 Aligned_cols=124 Identities=17% Similarity=0.148 Sum_probs=90.5
Q ss_pred hhHHHHHHHHHHHhhcCCCCEEEEEcCccchHHHHHhcCCCCCceEEEEeCChHHHHHHHHHHhhhhhcccccCCCCCCC
Q 002218 696 PLSKQRVEYALQHIKESCATTLVDFGCGSGSLLDSLLDYPTALEKIVGVDISQKSLSRAAKIIHSKLSKKLDAAVPCTDV 775 (952)
Q Consensus 696 PL~~QR~efVldlL~~~k~krVLDIGCGeG~ll~~LAr~g~~~~qVVGVDISeemLe~ArkrLsa~la~~~~~l~Pr~~~ 775 (952)
|+.+.....+.... ..++.+|||+|||+|.++..++..+ ...+|+|+|+|+.|++.|++++... +..
T Consensus 201 ~l~~~la~~l~~~~-~~~~~~vLD~gCGsG~~~i~~a~~~-~~~~v~g~Dis~~~l~~A~~n~~~~-----------gl~ 267 (373)
T 3tm4_A 201 HLKASIANAMIELA-ELDGGSVLDPMCGSGTILIELALRR-YSGEIIGIEKYRKHLIGAEMNALAA-----------GVL 267 (373)
T ss_dssp CCCHHHHHHHHHHH-TCCSCCEEETTCTTCHHHHHHHHTT-CCSCEEEEESCHHHHHHHHHHHHHT-----------TCG
T ss_pred CccHHHHHHHHHhh-cCCCCEEEEccCcCcHHHHHHHHhC-CCCeEEEEeCCHHHHHHHHHHHHHc-----------CCC
Confidence 44555555566665 5677899999999999999999887 2348999999999999999887531 112
Q ss_pred ccEEEEEcCccccCCCCCCccEEEEccccc-------cCChhHHHHHHHHHHHccCCCEEEEEecC
Q 002218 776 KSAVLFDGSITVFDSRLHGFDIGTCLEVIE-------HMEEDEASQFGNIVLSSFRPRILIVSTPN 834 (952)
Q Consensus 776 ~nVtf~qGDa~dLpf~d~sFDVVVcieVIE-------HL~dD~l~~L~eeI~RvLKPG~LIISTPN 834 (952)
.++++.++|+.++++.++.||+|++.-... ++. +....+.+++.++| +|.+++.+++
T Consensus 268 ~~i~~~~~D~~~~~~~~~~fD~Ii~npPyg~r~~~~~~~~-~ly~~~~~~l~r~l-~g~~~~i~~~ 331 (373)
T 3tm4_A 268 DKIKFIQGDATQLSQYVDSVDFAISNLPYGLKIGKKSMIP-DLYMKFFNELAKVL-EKRGVFITTE 331 (373)
T ss_dssp GGCEEEECCGGGGGGTCSCEEEEEEECCCC------CCHH-HHHHHHHHHHHHHE-EEEEEEEESC
T ss_pred CceEEEECChhhCCcccCCcCEEEECCCCCcccCcchhHH-HHHHHHHHHHHHHc-CCeEEEEECC
Confidence 479999999999988788999999953322 121 22255667788988 5544444544
No 196
>3opn_A Putative hemolysin; structural genomics, PSI-2, protein structure initiative, NE SGX research center for structural genomics, nysgxrc; 2.05A {Lactococcus lactis subsp}
Probab=98.94 E-value=3.2e-09 Score=110.03 Aligned_cols=173 Identities=11% Similarity=0.076 Sum_probs=94.3
Q ss_pred HHHHHHHhhc-CCCCEEEEEcCccchHHHHHhcCCCCCceEEEEeCChHHHHHHHHHHhhhhhcccccCCCCCCCccEEE
Q 002218 702 VEYALQHIKE-SCATTLVDFGCGSGSLLDSLLDYPTALEKIVGVDISQKSLSRAAKIIHSKLSKKLDAAVPCTDVKSAVL 780 (952)
Q Consensus 702 ~efVldlL~~-~k~krVLDIGCGeG~ll~~LAr~g~~~~qVVGVDISeemLe~ArkrLsa~la~~~~~l~Pr~~~~nVtf 780 (952)
.+.+++.+.. ..+++|||||||+|.++..|++.+. .+|+|||+|+.|++.|+++.. ++..
T Consensus 25 L~~~L~~~~~~~~g~~VLDiGcGtG~~t~~la~~g~--~~V~gvDis~~ml~~a~~~~~-----------------~~~~ 85 (232)
T 3opn_A 25 LEKALKEFHLEINGKTCLDIGSSTGGFTDVMLQNGA--KLVYALDVGTNQLAWKIRSDE-----------------RVVV 85 (232)
T ss_dssp HHHHHHHTTCCCTTCEEEEETCTTSHHHHHHHHTTC--SEEEEECSSCCCCCHHHHTCT-----------------TEEE
T ss_pred HHHHHHHcCCCCCCCEEEEEccCCCHHHHHHHhcCC--CEEEEEcCCHHHHHHHHHhCc-----------------cccc
Confidence 3344444443 3567999999999999999999862 599999999999999865321 1111
Q ss_pred E-EcCccccC---CCCCCccEEEEccccccCChhHHHHHHHHHHHccCCC-EEEEEecCCchhHHHHhhccCccCCCCcc
Q 002218 781 F-DGSITVFD---SRLHGFDIGTCLEVIEHMEEDEASQFGNIVLSSFRPR-ILIVSTPNYEYNAILQKSSSTIQEDDPDE 855 (952)
Q Consensus 781 ~-qGDa~dLp---f~d~sFDVVVcieVIEHL~dD~l~~L~eeI~RvLKPG-~LIISTPN~efN~lf~~L~~~ta~eYPde 855 (952)
. ..++.... .....||.+.+-.++.++. .+.+++.++|||| .+++.+ ...|......+ +
T Consensus 86 ~~~~~~~~~~~~~~~~~~~d~~~~D~v~~~l~-----~~l~~i~rvLkpgG~lv~~~-~p~~e~~~~~~-~--------- 149 (232)
T 3opn_A 86 MEQFNFRNAVLADFEQGRPSFTSIDVSFISLD-----LILPPLYEILEKNGEVAALI-KPQFEAGREQV-G--------- 149 (232)
T ss_dssp ECSCCGGGCCGGGCCSCCCSEEEECCSSSCGG-----GTHHHHHHHSCTTCEEEEEE-CHHHHSCHHHH-C---------
T ss_pred cccceEEEeCHhHcCcCCCCEEEEEEEhhhHH-----HHHHHHHHhccCCCEEEEEE-CcccccCHHHh-C---------
Confidence 1 11221111 1111245555555555552 3446799999998 555543 22222111111 0
Q ss_pred hhhhccccccCCCCccccCHHHHHHHHHHHHHHcCcEEEEEeecCCCCCCCCccceeeeeecCC
Q 002218 856 KTQLQSCKFRNHDHKFEWTRDQFNCWATELAARHNYSVEFSGVGGSGDREPGFASQIAVFRSRT 919 (952)
Q Consensus 856 ~~g~~~~~fRh~DHkFEWTReEFqsWae~La~q~GYsVefsGVG~~p~ge~G~aTQIAVFrRk~ 919 (952)
....++++ +...++.+++. .++.+.||.+.-.-...-. +..|...-+..++|..
T Consensus 150 ----~~G~~~d~-~~~~~~~~~l~----~~l~~aGf~v~~~~~~pi~-g~~gn~e~l~~~~~~~ 203 (232)
T 3opn_A 150 ----KNGIIRDP-KVHQMTIEKVL----KTATQLGFSVKGLTFSPIK-GGAGNVEFLVHLLKDG 203 (232)
T ss_dssp -----CCCCCCH-HHHHHHHHHHH----HHHHHHTEEEEEEEECSSC-BTTTBCCEEEEEEESS
T ss_pred ----cCCeecCc-chhHHHHHHHH----HHHHHCCCEEEEEEEccCC-CCCCCHHHHHHHhhcc
Confidence 00112221 22234666666 4566779998644332211 1234444566666643
No 197
>3id6_C Fibrillarin-like rRNA/TRNA 2'-O-methyltransferase; C/D guide RNA, 2'-O-methylation, coiled-coil, methyltransfer binding, rRNA processing; HET: SAM; 2.60A {Sulfolobus solfataricus} SCOP: c.66.1.0 PDB: 3id5_B* 3pla_E*
Probab=98.94 E-value=3.1e-09 Score=111.07 Aligned_cols=120 Identities=12% Similarity=0.060 Sum_probs=84.0
Q ss_pred hhHHHHHHHHHHHhh---cCCCCEEEEEcCccchHHHHHhcCCCCCceEEEEeCChHHHHHHHHHHhhhhhcccccCCCC
Q 002218 696 PLSKQRVEYALQHIK---ESCATTLVDFGCGSGSLLDSLLDYPTALEKIVGVDISQKSLSRAAKIIHSKLSKKLDAAVPC 772 (952)
Q Consensus 696 PL~~QR~efVldlL~---~~k~krVLDIGCGeG~ll~~LAr~g~~~~qVVGVDISeemLe~ArkrLsa~la~~~~~l~Pr 772 (952)
|.....-..+...+. ..++.+|||+|||+|.++..+++..++..+|+|+|+++.|++...+....
T Consensus 56 ~~~skla~~ll~~l~~~~l~~g~~VLDlG~GtG~~t~~la~~v~~~G~V~avD~s~~~l~~l~~~a~~------------ 123 (232)
T 3id6_C 56 AFRSKLAGAILKGLKTNPIRKGTKVLYLGAASGTTISHVSDIIELNGKAYGVEFSPRVVRELLLVAQR------------ 123 (232)
T ss_dssp TTTCHHHHHHHTTCSCCSCCTTCEEEEETCTTSHHHHHHHHHHTTTSEEEEEECCHHHHHHHHHHHHH------------
T ss_pred hHHHHHHHHHHhhhhhcCCCCCCEEEEEeecCCHHHHHHHHHhCCCCEEEEEECcHHHHHHHHHHhhh------------
Confidence 343333445555444 55788999999999999999987633347999999999987655433211
Q ss_pred CCCccEEEEEcCccccCC---CCCCccEEEEccccccCChhHHHHHHHHHHHccCCC-EEEEEec
Q 002218 773 TDVKSAVLFDGSITVFDS---RLHGFDIGTCLEVIEHMEEDEASQFGNIVLSSFRPR-ILIVSTP 833 (952)
Q Consensus 773 ~~~~nVtf~qGDa~dLpf---~d~sFDVVVcieVIEHL~dD~l~~L~eeI~RvLKPG-~LIISTP 833 (952)
..++.++++|+..... ....||+|++.... +++...+...+.++|||| .++++..
T Consensus 124 --r~nv~~i~~Da~~~~~~~~~~~~~D~I~~d~a~----~~~~~il~~~~~~~LkpGG~lvisik 182 (232)
T 3id6_C 124 --RPNIFPLLADARFPQSYKSVVENVDVLYVDIAQ----PDQTDIAIYNAKFFLKVNGDMLLVIK 182 (232)
T ss_dssp --CTTEEEEECCTTCGGGTTTTCCCEEEEEECCCC----TTHHHHHHHHHHHHEEEEEEEEEEEC
T ss_pred --cCCeEEEEcccccchhhhccccceEEEEecCCC----hhHHHHHHHHHHHhCCCCeEEEEEEc
Confidence 1379999999986532 24689999987543 355566666677799999 7777643
No 198
>4hc4_A Protein arginine N-methyltransferase 6; HRMT1L6, S-adenosyl-L-homocysteine, struc genomics, structural genomics consortium, SGC; HET: SAH; 1.97A {Homo sapiens}
Probab=98.94 E-value=2e-09 Score=119.92 Aligned_cols=106 Identities=12% Similarity=0.075 Sum_probs=78.9
Q ss_pred hcCCCCEEEEEcCccchHHHHHhcCCCCCceEEEEeCChHHHHHHHHHHhhhhhcccccCCCCCCCccEEEEEcCccccC
Q 002218 710 KESCATTLVDFGCGSGSLLDSLLDYPTALEKIVGVDISQKSLSRAAKIIHSKLSKKLDAAVPCTDVKSAVLFDGSITVFD 789 (952)
Q Consensus 710 ~~~k~krVLDIGCGeG~ll~~LAr~g~~~~qVVGVDISeemLe~ArkrLsa~la~~~~~l~Pr~~~~nVtf~qGDa~dLp 789 (952)
...++++|||||||+|.++...++.|. .+|+|||.|+ |++.|++.+... +...+|+++++++++++
T Consensus 80 ~~~~~k~VLDvG~GtGiLs~~Aa~aGA--~~V~ave~s~-~~~~a~~~~~~n-----------~~~~~i~~i~~~~~~~~ 145 (376)
T 4hc4_A 80 AALRGKTVLDVGAGTGILSIFCAQAGA--RRVYAVEASA-IWQQAREVVRFN-----------GLEDRVHVLPGPVETVE 145 (376)
T ss_dssp HHHTTCEEEEETCTTSHHHHHHHHTTC--SEEEEEECST-THHHHHHHHHHT-----------TCTTTEEEEESCTTTCC
T ss_pred HhcCCCEEEEeCCCccHHHHHHHHhCC--CEEEEEeChH-HHHHHHHHHHHc-----------CCCceEEEEeeeeeeec
Confidence 345789999999999999998898885 6899999996 888888766431 22347999999999987
Q ss_pred CCCCCccEEEEccccccCCh-hHHHHHHHHHHHccCCCEEEE
Q 002218 790 SRLHGFDIGTCLEVIEHMEE-DEASQFGNIVLSSFRPRILIV 830 (952)
Q Consensus 790 f~d~sFDVVVcieVIEHL~d-D~l~~L~eeI~RvLKPG~LII 830 (952)
.+ .+||+|++-.+-..+.. ..+..+.....++||||.++|
T Consensus 146 lp-e~~DvivsE~~~~~l~~e~~l~~~l~a~~r~Lkp~G~~i 186 (376)
T 4hc4_A 146 LP-EQVDAIVSEWMGYGLLHESMLSSVLHARTKWLKEGGLLL 186 (376)
T ss_dssp CS-SCEEEEECCCCBTTBTTTCSHHHHHHHHHHHEEEEEEEE
T ss_pred CC-ccccEEEeecccccccccchhhhHHHHHHhhCCCCceEC
Confidence 65 68999998433222221 234455556789999995444
No 199
>3frh_A 16S rRNA methylase; methyltransferase domain, helical N-terminal domain, methyltransferase, plasmid, transferase; HET: SAH; 1.20A {Escherichia coli} PDB: 3fri_A* 3b89_A*
Probab=98.94 E-value=2.6e-09 Score=113.26 Aligned_cols=104 Identities=16% Similarity=0.175 Sum_probs=86.5
Q ss_pred CCCCEEEEEcCccchHHHHHhcCCCCCceEEEEeCChHHHHHHHHHHhhhhhcccccCCCCCCCccEEEEEcCccccCCC
Q 002218 712 SCATTLVDFGCGSGSLLDSLLDYPTALEKIVGVDISQKSLSRAAKIIHSKLSKKLDAAVPCTDVKSAVLFDGSITVFDSR 791 (952)
Q Consensus 712 ~k~krVLDIGCGeG~ll~~LAr~g~~~~qVVGVDISeemLe~ArkrLsa~la~~~~~l~Pr~~~~nVtf~qGDa~dLpf~ 791 (952)
..+.+|||||||.|-++..+. + ..+++|+|||+.+++.+++++.. .+ .+..+.++|....+++
T Consensus 104 ~~p~~VLDlGCG~gpLal~~~--~--~~~y~a~DId~~~i~~ar~~~~~------------~g-~~~~~~v~D~~~~~~~ 166 (253)
T 3frh_A 104 ETPRRVLDIACGLNPLALYER--G--IASVWGCDIHQGLGDVITPFARE------------KD-WDFTFALQDVLCAPPA 166 (253)
T ss_dssp CCCSEEEEETCTTTHHHHHHT--T--CSEEEEEESBHHHHHHHHHHHHH------------TT-CEEEEEECCTTTSCCC
T ss_pred CCCCeEEEecCCccHHHHHhc--c--CCeEEEEeCCHHHHHHHHHHHHh------------cC-CCceEEEeecccCCCC
Confidence 467899999999999998877 3 27999999999999999987642 12 4789999999877755
Q ss_pred CCCccEEEEccccccCChhHHHHHHHHHHHccCCCEEEEEecC
Q 002218 792 LHGFDIGTCLEVIEHMEEDEASQFGNIVLSSFRPRILIVSTPN 834 (952)
Q Consensus 792 d~sFDVVVcieVIEHL~dD~l~~L~eeI~RvLKPG~LIISTPN 834 (952)
. .||+|+..-++|||+..+..... .+...|+++.++|+.|-
T Consensus 167 ~-~~DvvLllk~lh~LE~q~~~~~~-~ll~aL~~~~vvVsfPt 207 (253)
T 3frh_A 167 E-AGDLALIFKLLPLLEREQAGSAM-ALLQSLNTPRMAVSFPT 207 (253)
T ss_dssp C-BCSEEEEESCHHHHHHHSTTHHH-HHHHHCBCSEEEEEEEC
T ss_pred C-CcchHHHHHHHHHhhhhchhhHH-HHHHHhcCCCEEEEcCh
Confidence 4 89999999999999866555555 58889999999999884
No 200
>3kr9_A SAM-dependent methyltransferase; class I rossmann-like methyltransferase fold; 2.00A {Streptococcus pneumoniae} PDB: 3ku1_A*
Probab=98.94 E-value=7.1e-09 Score=108.14 Aligned_cols=119 Identities=11% Similarity=0.069 Sum_probs=87.4
Q ss_pred HHHHHHHHHhhcCCCCEEEEEcCccchHHHHHhcCCCCCceEEEEeCChHHHHHHHHHHhhhhhcccccCCCCCCCccEE
Q 002218 700 QRVEYALQHIKESCATTLVDFGCGSGSLLDSLLDYPTALEKIVGVDISQKSLSRAAKIIHSKLSKKLDAAVPCTDVKSAV 779 (952)
Q Consensus 700 QR~efVldlL~~~k~krVLDIGCGeG~ll~~LAr~g~~~~qVVGVDISeemLe~ArkrLsa~la~~~~~l~Pr~~~~nVt 779 (952)
.|.+.+.+.+. ++.+|||||||+|.++..+++.+ +..+|+|+|+++.+++.|++++... .-..+|+
T Consensus 4 ~RL~~l~~~v~--~g~~VlDIGtGsG~l~i~la~~~-~~~~V~avDi~~~al~~A~~N~~~~-----------gl~~~i~ 69 (225)
T 3kr9_A 4 KRLELVASFVS--QGAILLDVGSDHAYLPIELVERG-QIKSAIAGEVVEGPYQSAVKNVEAH-----------GLKEKIQ 69 (225)
T ss_dssp HHHHHHHTTSC--TTEEEEEETCSTTHHHHHHHHTT-SEEEEEEEESSHHHHHHHHHHHHHT-----------TCTTTEE
T ss_pred HHHHHHHHhCC--CCCEEEEeCCCcHHHHHHHHHhC-CCCEEEEEECCHHHHHHHHHHHHHc-----------CCCceEE
Confidence 57778877765 56799999999999999999986 4578999999999999999887532 1123699
Q ss_pred EEEcCccccCCCCCCccEEEEccccccCChhHHHHHHHHHHHccCCCEEEEEecCCc
Q 002218 780 LFDGSITVFDSRLHGFDIGTCLEVIEHMEEDEASQFGNIVLSSFRPRILIVSTPNYE 836 (952)
Q Consensus 780 f~qGDa~dLpf~d~sFDVVVcieVIEHL~dD~l~~L~eeI~RvLKPG~LIISTPN~e 836 (952)
+.++|+.+.-.....||+|+..++ ..+....+.+.....|+|+..+|..|+..
T Consensus 70 ~~~~d~l~~l~~~~~~D~IviaG~----Gg~~i~~Il~~~~~~L~~~~~lVlq~~~~ 122 (225)
T 3kr9_A 70 VRLANGLAAFEETDQVSVITIAGM----GGRLIARILEEGLGKLANVERLILQPNNR 122 (225)
T ss_dssp EEECSGGGGCCGGGCCCEEEEEEE----CHHHHHHHHHHTGGGCTTCCEEEEEESSC
T ss_pred EEECchhhhcccCcCCCEEEEcCC----ChHHHHHHHHHHHHHhCCCCEEEEECCCC
Confidence 999999643222226999886554 32334556667889999983344466644
No 201
>4df3_A Fibrillarin-like rRNA/TRNA 2'-O-methyltransferase; NADP rossmann superfamily, S-adenosyl-L-M (SAM) binding, nucleolus; HET: SAM; 1.73A {Aeropyrum pernix}
Probab=98.93 E-value=1.4e-09 Score=114.07 Aligned_cols=106 Identities=13% Similarity=0.172 Sum_probs=80.2
Q ss_pred hcCCCCEEEEEcCccchHHHHHhcCCCCCceEEEEeCChHHHHHHHHHHhhhhhcccccCCCCCCCccEEEEEcCccc--
Q 002218 710 KESCATTLVDFGCGSGSLLDSLLDYPTALEKIVGVDISQKSLSRAAKIIHSKLSKKLDAAVPCTDVKSAVLFDGSITV-- 787 (952)
Q Consensus 710 ~~~k~krVLDIGCGeG~ll~~LAr~g~~~~qVVGVDISeemLe~ArkrLsa~la~~~~~l~Pr~~~~nVtf~qGDa~d-- 787 (952)
...++.+|||+|||+|.++..+++.-++..+|+|+|++++|++.++++.. ...++..+.+|+..
T Consensus 74 ~ikpG~~VldlG~G~G~~~~~la~~VG~~G~V~avD~s~~~~~~l~~~a~--------------~~~ni~~V~~d~~~p~ 139 (233)
T 4df3_A 74 PVKEGDRILYLGIASGTTASHMSDIIGPRGRIYGVEFAPRVMRDLLTVVR--------------DRRNIFPILGDARFPE 139 (233)
T ss_dssp CCCTTCEEEEETCTTSHHHHHHHHHHCTTCEEEEEECCHHHHHHHHHHST--------------TCTTEEEEESCTTCGG
T ss_pred CCCCCCEEEEecCcCCHHHHHHHHHhCCCceEEEEeCCHHHHHHHHHhhH--------------hhcCeeEEEEeccCcc
Confidence 34678999999999999999999874466899999999999999987642 22478888888765
Q ss_pred -cCCCCCCccEEEEccccccCChhHHHHHHHHHHHccCCC-EEEEEec
Q 002218 788 -FDSRLHGFDIGTCLEVIEHMEEDEASQFGNIVLSSFRPR-ILIVSTP 833 (952)
Q Consensus 788 -Lpf~d~sFDVVVcieVIEHL~dD~l~~L~eeI~RvLKPG-~LIISTP 833 (952)
.+.....+|+|++. +.|-. + ...+..++.++|||| .++++..
T Consensus 140 ~~~~~~~~vDvVf~d--~~~~~-~-~~~~l~~~~r~LKpGG~lvI~ik 183 (233)
T 4df3_A 140 KYRHLVEGVDGLYAD--VAQPE-Q-AAIVVRNARFFLRDGGYMLMAIK 183 (233)
T ss_dssp GGTTTCCCEEEEEEC--CCCTT-H-HHHHHHHHHHHEEEEEEEEEEEE
T ss_pred ccccccceEEEEEEe--ccCCh-h-HHHHHHHHHHhccCCCEEEEEEe
Confidence 34456789999863 33433 3 345556799999999 6666543
No 202
>2h00_A Methyltransferase 10 domain containing protein; structural genomics, structural genomics consortium, SGC; HET: SAH; 2.00A {Homo sapiens} SCOP: c.66.1.54
Probab=98.93 E-value=1.4e-09 Score=111.46 Aligned_cols=106 Identities=9% Similarity=-0.004 Sum_probs=70.8
Q ss_pred CCCEEEEEcCccchHHHHHhcCCCCCceEEEEeCChHHHHHHHHHHhhhhhcccccCCCCCCCccEEEEEcCcccc---C
Q 002218 713 CATTLVDFGCGSGSLLDSLLDYPTALEKIVGVDISQKSLSRAAKIIHSKLSKKLDAAVPCTDVKSAVLFDGSITVF---D 789 (952)
Q Consensus 713 k~krVLDIGCGeG~ll~~LAr~g~~~~qVVGVDISeemLe~ArkrLsa~la~~~~~l~Pr~~~~nVtf~qGDa~dL---p 789 (952)
++.+|||+|||+|.++..+++.. +..+|+|+|+|+.|++.|++++... ....+++++++|+.+. +
T Consensus 65 ~~~~vLDlG~G~G~~~~~la~~~-~~~~v~gvD~s~~~~~~a~~~~~~~-----------~~~~~v~~~~~d~~~~~~~~ 132 (254)
T 2h00_A 65 TLRRGIDIGTGASCIYPLLGATL-NGWYFLATEVDDMCFNYAKKNVEQN-----------NLSDLIKVVKVPQKTLLMDA 132 (254)
T ss_dssp CCCEEEEESCTTTTHHHHHHHHH-HCCEEEEEESCHHHHHHHHHHHHHT-----------TCTTTEEEEECCTTCSSTTT
T ss_pred CCCEEEEeCCChhHHHHHHHHhC-CCCeEEEEECCHHHHHHHHHHHHHc-----------CCCccEEEEEcchhhhhhhh
Confidence 56799999999999998888753 1269999999999999999876531 1122599999998762 2
Q ss_pred CC---CCCccEEEEccccccCCh-------------hHHHHHHHHHHHccCCC-EEEE
Q 002218 790 SR---LHGFDIGTCLEVIEHMEE-------------DEASQFGNIVLSSFRPR-ILIV 830 (952)
Q Consensus 790 f~---d~sFDVVVcieVIEHL~d-------------D~l~~L~eeI~RvLKPG-~LII 830 (952)
+. +..||+|++.-..++... ++...+...+.++|||| .+.+
T Consensus 133 ~~~~~~~~fD~i~~npp~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~LkpgG~l~~ 190 (254)
T 2h00_A 133 LKEESEIIYDFCMCNPPFFANQLEAKGVNSRNPRRPPPSSVNTGGITEIMAEGGELEF 190 (254)
T ss_dssp STTCCSCCBSEEEECCCCC-------------------------CTTTTHHHHTHHHH
T ss_pred hhcccCCcccEEEECCCCccCcchhcccccccccccCCHHHHhhhHHHHEecCCEEEE
Confidence 33 258999999744433320 11223444688899997 4433
No 203
>3hp7_A Hemolysin, putative; structural genomics, APC64019, PSI-2, protein STR initiative, midwest center for structural genomics, MCSG; HET: MSE; 1.53A {Streptococcus thermophilus}
Probab=98.92 E-value=1.9e-09 Score=116.33 Aligned_cols=104 Identities=11% Similarity=0.042 Sum_probs=72.4
Q ss_pred HHHHHHhhc-CCCCEEEEEcCccchHHHHHhcCCCCCceEEEEeCChHHHHHHHHHHhhhhhcccccCCCCCCCccEEE-
Q 002218 703 EYALQHIKE-SCATTLVDFGCGSGSLLDSLLDYPTALEKIVGVDISQKSLSRAAKIIHSKLSKKLDAAVPCTDVKSAVL- 780 (952)
Q Consensus 703 efVldlL~~-~k~krVLDIGCGeG~ll~~LAr~g~~~~qVVGVDISeemLe~ArkrLsa~la~~~~~l~Pr~~~~nVtf- 780 (952)
..+++.+.. ..+.+|||||||+|.++..|++.+. .+|+|||+|+.||+.+.+.- +++..
T Consensus 74 ~~~l~~~~~~~~g~~vLDiGcGTG~~t~~L~~~ga--~~V~aVDvs~~mL~~a~r~~-----------------~rv~~~ 134 (291)
T 3hp7_A 74 EKALAVFNLSVEDMITIDIGASTGGFTDVMLQNGA--KLVYAVDVGTNQLVWKLRQD-----------------DRVRSM 134 (291)
T ss_dssp HHHHHHTTCCCTTCEEEEETCTTSHHHHHHHHTTC--SEEEEECSSSSCSCHHHHTC-----------------TTEEEE
T ss_pred HHHHHhcCCCccccEEEecCCCccHHHHHHHhCCC--CEEEEEECCHHHHHHHHHhC-----------------ccccee
Confidence 334444443 3567999999999999999998863 69999999999999864321 12322
Q ss_pred EEcCccccCC---CCCCccEEEEccccccCChhHHHHHHHHHHHccCCC-EEEE
Q 002218 781 FDGSITVFDS---RLHGFDIGTCLEVIEHMEEDEASQFGNIVLSSFRPR-ILIV 830 (952)
Q Consensus 781 ~qGDa~dLpf---~d~sFDVVVcieVIEHL~dD~l~~L~eeI~RvLKPG-~LII 830 (952)
...++..++. +...||+|++..+++++. .++.++.++|||| .+++
T Consensus 135 ~~~ni~~l~~~~l~~~~fD~v~~d~sf~sl~-----~vL~e~~rvLkpGG~lv~ 183 (291)
T 3hp7_A 135 EQYNFRYAEPVDFTEGLPSFASIDVSFISLN-----LILPALAKILVDGGQVVA 183 (291)
T ss_dssp CSCCGGGCCGGGCTTCCCSEEEECCSSSCGG-----GTHHHHHHHSCTTCEEEE
T ss_pred cccCceecchhhCCCCCCCEEEEEeeHhhHH-----HHHHHHHHHcCcCCEEEE
Confidence 2334444432 234599999988888774 3445799999998 5444
No 204
>3lcv_B Sisomicin-gentamicin resistance methylase SGM; antibiotic resistance, methyltransferase, transferase; HET: SAM; 2.00A {Micromonospora zionensis} PDB: 3lcu_A*
Probab=98.91 E-value=2.1e-09 Score=115.12 Aligned_cols=119 Identities=14% Similarity=0.162 Sum_probs=93.9
Q ss_pred HHHHHHHHHHhhcCCCCEEEEEcCccchHHHHHhcCCCCCceEEEEeCChHHHHHHHHHHhhhhhcccccCCCCCCCccE
Q 002218 699 KQRVEYALQHIKESCATTLVDFGCGSGSLLDSLLDYPTALEKIVGVDISQKSLSRAAKIIHSKLSKKLDAAVPCTDVKSA 778 (952)
Q Consensus 699 ~QR~efVldlL~~~k~krVLDIGCGeG~ll~~LAr~g~~~~qVVGVDISeemLe~ArkrLsa~la~~~~~l~Pr~~~~nV 778 (952)
+.-|..+.+.+ ..+.+|||||||.|-++..++... +..+|+|+||++.|++.+++++.. .+ .+.
T Consensus 120 D~fY~~i~~~i--~~p~~VLDLGCG~GpLAl~~~~~~-p~a~y~a~DId~~~le~a~~~l~~------------~g-~~~ 183 (281)
T 3lcv_B 120 DEFYRELFRHL--PRPNTLRDLACGLNPLAAPWMGLP-AETVYIASDIDARLVGFVDEALTR------------LN-VPH 183 (281)
T ss_dssp HHHHHHHGGGS--CCCSEEEETTCTTGGGCCTTTTCC-TTCEEEEEESBHHHHHHHHHHHHH------------TT-CCE
T ss_pred HHHHHHHHhcc--CCCceeeeeccCccHHHHHHHhhC-CCCEEEEEeCCHHHHHHHHHHHHh------------cC-CCc
Confidence 33344555554 347899999999999999888764 468999999999999999988753 12 257
Q ss_pred EEEEcCccccCCCCCCccEEEEccccccCChhHHHHHHHHHHHccCCCEEEEEecCC
Q 002218 779 VLFDGSITVFDSRLHGFDIGTCLEVIEHMEEDEASQFGNIVLSSFRPRILIVSTPNY 835 (952)
Q Consensus 779 tf~qGDa~dLpf~d~sFDVVVcieVIEHL~dD~l~~L~eeI~RvLKPG~LIISTPN~ 835 (952)
++.+.|...-+ ....||+|++.-+++||++.+..... .++..|+|+.++|+-|-.
T Consensus 184 ~~~v~D~~~~~-p~~~~DvaL~lkti~~Le~q~kg~g~-~ll~aL~~~~vvVSfp~k 238 (281)
T 3lcv_B 184 RTNVADLLEDR-LDEPADVTLLLKTLPCLETQQRGSGW-EVIDIVNSPNIVVTFPTK 238 (281)
T ss_dssp EEEECCTTTSC-CCSCCSEEEETTCHHHHHHHSTTHHH-HHHHHSSCSEEEEEEECC
T ss_pred eEEEeeecccC-CCCCcchHHHHHHHHHhhhhhhHHHH-HHHHHhCCCCEEEeccch
Confidence 88888887655 45689999999999999866665555 599999999999988863
No 205
>3ajd_A Putative methyltransferase MJ0026; tRNA, M5C, rossmann fold, structural genomics, riken structu genomics/proteomics initiative; 1.27A {Methanocaldococcus jannaschii} PDB: 3a4t_A
Probab=98.91 E-value=1.6e-09 Score=113.91 Aligned_cols=118 Identities=14% Similarity=0.124 Sum_probs=85.9
Q ss_pred HHHHHhhcCCCCEEEEEcCccchHHHHHhcCCCCCceEEEEeCChHHHHHHHHHHhhhhhcccccCCCCCCCccEEEEEc
Q 002218 704 YALQHIKESCATTLVDFGCGSGSLLDSLLDYPTALEKIVGVDISQKSLSRAAKIIHSKLSKKLDAAVPCTDVKSAVLFDG 783 (952)
Q Consensus 704 fVldlL~~~k~krVLDIGCGeG~ll~~LAr~g~~~~qVVGVDISeemLe~ArkrLsa~la~~~~~l~Pr~~~~nVtf~qG 783 (952)
++...+...++.+|||+|||+|..+..+++..+...+|+|+|+++.+++.+++++.. .+..++++.++
T Consensus 74 l~~~~l~~~~g~~VLDlgaG~G~~t~~la~~~~~~~~v~avD~~~~~l~~~~~~~~~------------~g~~~v~~~~~ 141 (274)
T 3ajd_A 74 IPPIVLNPREDDFILDMCAAPGGKTTHLAQLMKNKGTIVAVEISKTRTKALKSNINR------------MGVLNTIIINA 141 (274)
T ss_dssp HHHHHHCCCTTCEEEETTCTTCHHHHHHHHHTTTCSEEEEEESCHHHHHHHHHHHHH------------TTCCSEEEEES
T ss_pred HHHHHhCCCCcCEEEEeCCCccHHHHHHHHHcCCCCEEEEECCCHHHHHHHHHHHHH------------hCCCcEEEEeC
Confidence 344555666788999999999999999987432236999999999999999887652 23458999999
Q ss_pred CccccCC----CCCCccEEEEc------ccccc-----------CChhHHHHHHHHHHHccCCC-EEEEEecC
Q 002218 784 SITVFDS----RLHGFDIGTCL------EVIEH-----------MEEDEASQFGNIVLSSFRPR-ILIVSTPN 834 (952)
Q Consensus 784 Da~dLpf----~d~sFDVVVci------eVIEH-----------L~dD~l~~L~eeI~RvLKPG-~LIISTPN 834 (952)
|+.+++. ..+.||+|++. +++.+ +...+ ..+.+.+.++|||| .++++|..
T Consensus 142 D~~~~~~~~~~~~~~fD~Vl~d~Pcs~~g~~~~~p~~~~~~~~~~~~~~-~~~l~~~~~~LkpgG~lv~stcs 213 (274)
T 3ajd_A 142 DMRKYKDYLLKNEIFFDKILLDAPCSGNIIKDKNRNVSEEDIKYCSLRQ-KELIDIGIDLLKKDGELVYSTCS 213 (274)
T ss_dssp CHHHHHHHHHHTTCCEEEEEEEECCC------------HHHHTGGGTCH-HHHHHHHHHHEEEEEEEEEEESC
T ss_pred ChHhcchhhhhccccCCEEEEcCCCCCCcccccCCCCCHHHHHHHHHHH-HHHHHHHHHhCCCCCEEEEEECC
Confidence 9988764 25789999985 33331 11233 34556799999998 77887764
No 206
>2zfu_A Nucleomethylin, cerebral protein 1; nucleolar protein, SAM-binding protein, protein structure, N phosphoprotein, nuclear protein; HET: SAH; 2.00A {Homo sapiens}
Probab=98.91 E-value=1.5e-09 Score=107.80 Aligned_cols=94 Identities=14% Similarity=0.226 Sum_probs=72.0
Q ss_pred HHHHhh-cCCCCEEEEEcCccchHHHHHhcCCCCCceEEEEeCChHHHHHHHHHHhhhhhcccccCCCCCCCccEEEEEc
Q 002218 705 ALQHIK-ESCATTLVDFGCGSGSLLDSLLDYPTALEKIVGVDISQKSLSRAAKIIHSKLSKKLDAAVPCTDVKSAVLFDG 783 (952)
Q Consensus 705 VldlL~-~~k~krVLDIGCGeG~ll~~LAr~g~~~~qVVGVDISeemLe~ArkrLsa~la~~~~~l~Pr~~~~nVtf~qG 783 (952)
+.+.+. ..++.+|||||||+|.++..++ .+|+|+|+|+. ++++.++
T Consensus 58 ~~~~l~~~~~~~~vLDiG~G~G~~~~~l~------~~v~~~D~s~~---------------------------~~~~~~~ 104 (215)
T 2zfu_A 58 IARDLRQRPASLVVADFGCGDCRLASSIR------NPVHCFDLASL---------------------------DPRVTVC 104 (215)
T ss_dssp HHHHHHTSCTTSCEEEETCTTCHHHHHCC------SCEEEEESSCS---------------------------STTEEES
T ss_pred HHHHHhccCCCCeEEEECCcCCHHHHHhh------ccEEEEeCCCC---------------------------CceEEEe
Confidence 444443 2456899999999999998773 57999999987 1246788
Q ss_pred CccccCCCCCCccEEEEccccccCChhHHHHHHHHHHHccCCC-EEEEEecC
Q 002218 784 SITVFDSRLHGFDIGTCLEVIEHMEEDEASQFGNIVLSSFRPR-ILIVSTPN 834 (952)
Q Consensus 784 Da~dLpf~d~sFDVVVcieVIEHL~dD~l~~L~eeI~RvLKPG-~LIISTPN 834 (952)
|+.++++.++.||+|++..+++| . +.. .+.+++.++|+|| .+++.+++
T Consensus 105 d~~~~~~~~~~fD~v~~~~~l~~-~-~~~-~~l~~~~~~L~~gG~l~i~~~~ 153 (215)
T 2zfu_A 105 DMAQVPLEDESVDVAVFCLSLMG-T-NIR-DFLEEANRVLKPGGLLKVAEVS 153 (215)
T ss_dssp CTTSCSCCTTCEEEEEEESCCCS-S-CHH-HHHHHHHHHEEEEEEEEEEECG
T ss_pred ccccCCCCCCCEeEEEEehhccc-c-CHH-HHHHHHHHhCCCCeEEEEEEcC
Confidence 99888888889999999999965 3 443 4445799999999 77776543
No 207
>3adn_A Spermidine synthase; aminopropyltransferase, polyamine synthase, rossmann fold, polyamine biosynthesis, spermidine biosynthesis, transferase; 2.90A {Escherichia coli} PDB: 3o4f_A
Probab=98.89 E-value=6.1e-09 Score=111.83 Aligned_cols=113 Identities=17% Similarity=0.132 Sum_probs=78.1
Q ss_pred CCCCEEEEEcCccchHHHHHhcCCCCCceEEEEeCChHHHHHHHHHHhhhhhcccccCCCCCCCccEEEEEcCccccC-C
Q 002218 712 SCATTLVDFGCGSGSLLDSLLDYPTALEKIVGVDISQKSLSRAAKIIHSKLSKKLDAAVPCTDVKSAVLFDGSITVFD-S 790 (952)
Q Consensus 712 ~k~krVLDIGCGeG~ll~~LAr~g~~~~qVVGVDISeemLe~ArkrLsa~la~~~~~l~Pr~~~~nVtf~qGDa~dLp-f 790 (952)
.++++|||||||+|.++..+++.. +..+|++||+|+.+++.|++++...... ....++++++.+|+.+.. .
T Consensus 82 ~~~~~VLdiG~G~G~~~~~l~~~~-~~~~V~~VDid~~vi~~ar~~~~~~~~~-------~~~~~rv~~~~~D~~~~l~~ 153 (294)
T 3adn_A 82 GHAKHVLIIGGGDGAMLREVTRHK-NVESITMVEIDAGVVSFCRQYLPNHNAG-------SYDDPRFKLVIDDGVNFVNQ 153 (294)
T ss_dssp TTCCEEEEESCTTCHHHHHHHTCT-TCCEEEEECSCTTHHHHHHHHCHHHHSS-------CTTCTTCCEECSCSCC---C
T ss_pred CCCCEEEEEeCChhHHHHHHHhCC-CCCEEEEEECCHHHHHHHHHhhhhcccc-------cccCCceEEEEChHHHHHhh
Confidence 357899999999999999999875 4579999999999999999876432100 012358999999987753 3
Q ss_pred CCCCccEEEEccccccCChhHH--HHHHHHHHHccCCC-EEEEEe
Q 002218 791 RLHGFDIGTCLEVIEHMEEDEA--SQFGNIVLSSFRPR-ILIVST 832 (952)
Q Consensus 791 ~d~sFDVVVcieVIEHL~dD~l--~~L~eeI~RvLKPG-~LIIST 832 (952)
..+.||+|++...-...+...+ ..|.+.+.++|+|| .+++.+
T Consensus 154 ~~~~fDvIi~D~~~p~~~~~~l~~~~f~~~~~~~LkpgG~lv~~~ 198 (294)
T 3adn_A 154 TSQTFDVIISDCTDPIGPGESLFTSAFYEGCKRCLNPGGIFVAQN 198 (294)
T ss_dssp CCCCEEEEEECC----------CCHHHHHHHHHTEEEEEEEEEEE
T ss_pred cCCCccEEEECCCCccCcchhccHHHHHHHHHHhcCCCCEEEEec
Confidence 4678999999543322222211 45667899999999 555544
No 208
>3c3y_A Pfomt, O-methyltransferase; plant secondary metabolism; HET: SAH; 1.37A {Mesembryanthemum crystallinum}
Probab=98.88 E-value=3.6e-09 Score=108.77 Aligned_cols=115 Identities=10% Similarity=0.041 Sum_probs=83.3
Q ss_pred HHHHHHHHhhcCCCCEEEEEcCccchHHHHHhcCCCCCceEEEEeCChHHHHHHHHHHhhhhhcccccCCCCCCCccEEE
Q 002218 701 RVEYALQHIKESCATTLVDFGCGSGSLLDSLLDYPTALEKIVGVDISQKSLSRAAKIIHSKLSKKLDAAVPCTDVKSAVL 780 (952)
Q Consensus 701 R~efVldlL~~~k~krVLDIGCGeG~ll~~LAr~g~~~~qVVGVDISeemLe~ArkrLsa~la~~~~~l~Pr~~~~nVtf 780 (952)
.-+++..++...++++|||||||+|..+..+++..++..+|+++|+++.+++.|++++... +...++++
T Consensus 58 ~~~~l~~l~~~~~~~~VLeiG~G~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~-----------g~~~~i~~ 126 (237)
T 3c3y_A 58 AGQLMSFVLKLVNAKKTIEVGVFTGYSLLLTALSIPDDGKITAIDFDREAYEIGLPFIRKA-----------GVEHKINF 126 (237)
T ss_dssp HHHHHHHHHHHTTCCEEEEECCTTSHHHHHHHHHSCTTCEEEEEESCHHHHHHHHHHHHHT-----------TCGGGEEE
T ss_pred HHHHHHHHHHhhCCCEEEEeCCCCCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHc-----------CCCCcEEE
Confidence 3344444455567889999999999999999876323479999999999999999887531 12247999
Q ss_pred EEcCccccCC-------CCCCccEEEEccccccCChhHHHHHHHHHHHccCCC-EEEEE
Q 002218 781 FDGSITVFDS-------RLHGFDIGTCLEVIEHMEEDEASQFGNIVLSSFRPR-ILIVS 831 (952)
Q Consensus 781 ~qGDa~dLpf-------~d~sFDVVVcieVIEHL~dD~l~~L~eeI~RvLKPG-~LIIS 831 (952)
+++|+.+... ..+.||+|++... . .....+.+.+.++|+|| .+++.
T Consensus 127 ~~gda~~~l~~l~~~~~~~~~fD~I~~d~~----~-~~~~~~l~~~~~~L~pGG~lv~d 180 (237)
T 3c3y_A 127 IESDAMLALDNLLQGQESEGSYDFGFVDAD----K-PNYIKYHERLMKLVKVGGIVAYD 180 (237)
T ss_dssp EESCHHHHHHHHHHSTTCTTCEEEEEECSC----G-GGHHHHHHHHHHHEEEEEEEEEE
T ss_pred EEcCHHHHHHHHHhccCCCCCcCEEEECCc----h-HHHHHHHHHHHHhcCCCeEEEEe
Confidence 9999976421 1478999987533 2 22345556799999999 55554
No 209
>3a27_A TYW2, uncharacterized protein MJ1557; wybutosine modification, transferase; HET: SAM; 2.00A {Methanocaldococcus jannaschii}
Probab=98.88 E-value=3.5e-09 Score=111.51 Aligned_cols=102 Identities=11% Similarity=0.078 Sum_probs=79.1
Q ss_pred CCCCEEEEEcCccchHHHHHhcCCCCCceEEEEeCChHHHHHHHHHHhhhhhcccccCCCCCCCccEEEEEcCccccCCC
Q 002218 712 SCATTLVDFGCGSGSLLDSLLDYPTALEKIVGVDISQKSLSRAAKIIHSKLSKKLDAAVPCTDVKSAVLFDGSITVFDSR 791 (952)
Q Consensus 712 ~k~krVLDIGCGeG~ll~~LAr~g~~~~qVVGVDISeemLe~ArkrLsa~la~~~~~l~Pr~~~~nVtf~qGDa~dLpf~ 791 (952)
.++.+|||+|||+|.++..+++.+ +..+|+|+|+++.+++.|++++.. .+..++.++++|+.+.+ .
T Consensus 118 ~~~~~VLDlgcG~G~~s~~la~~~-~~~~V~~vD~s~~av~~a~~n~~~------------n~l~~~~~~~~d~~~~~-~ 183 (272)
T 3a27_A 118 NENEVVVDMFAGIGYFTIPLAKYS-KPKLVYAIEKNPTAYHYLCENIKL------------NKLNNVIPILADNRDVE-L 183 (272)
T ss_dssp CTTCEEEETTCTTTTTHHHHHHHT-CCSEEEEEECCHHHHHHHHHHHHH------------TTCSSEEEEESCGGGCC-C
T ss_pred CCCCEEEEecCcCCHHHHHHHHhC-CCCEEEEEeCCHHHHHHHHHHHHH------------cCCCCEEEEECChHHcC-c
Confidence 467899999999999999999875 136999999999999999987652 23457899999999883 3
Q ss_pred CCCccEEEEccccccCChhHHHHHHHHHHHccCCC-EEEEEec
Q 002218 792 LHGFDIGTCLEVIEHMEEDEASQFGNIVLSSFRPR-ILIVSTP 833 (952)
Q Consensus 792 d~sFDVVVcieVIEHL~dD~l~~L~eeI~RvLKPG-~LIISTP 833 (952)
...||+|++.... . ...+...+.+.|+|| .++++..
T Consensus 184 ~~~~D~Vi~d~p~-----~-~~~~l~~~~~~LkpgG~l~~s~~ 220 (272)
T 3a27_A 184 KDVADRVIMGYVH-----K-THKFLDKTFEFLKDRGVIHYHET 220 (272)
T ss_dssp TTCEEEEEECCCS-----S-GGGGHHHHHHHEEEEEEEEEEEE
T ss_pred cCCceEEEECCcc-----c-HHHHHHHHHHHcCCCCEEEEEEc
Confidence 6789999987543 1 123445688999999 6666543
No 210
>3c0k_A UPF0064 protein YCCW; PUA domain, adoMet dependent methyltransferase fold; 2.00A {Escherichia coli K12}
Probab=98.88 E-value=2.8e-08 Score=109.85 Aligned_cols=107 Identities=14% Similarity=0.079 Sum_probs=79.4
Q ss_pred CCCCEEEEEcCccchHHHHHhcCCCCCceEEEEeCChHHHHHHHHHHhhhhhcccccCCCCCCC-c-cEEEEEcCccccC
Q 002218 712 SCATTLVDFGCGSGSLLDSLLDYPTALEKIVGVDISQKSLSRAAKIIHSKLSKKLDAAVPCTDV-K-SAVLFDGSITVFD 789 (952)
Q Consensus 712 ~k~krVLDIGCGeG~ll~~LAr~g~~~~qVVGVDISeemLe~ArkrLsa~la~~~~~l~Pr~~~-~-nVtf~qGDa~dLp 789 (952)
.++.+|||+|||+|.++..+++.+. .+|+|||+|+.+++.|++++.. .+. . +++++++|+.+..
T Consensus 219 ~~~~~VLDl~cG~G~~sl~la~~g~--~~V~~vD~s~~al~~a~~n~~~------------ngl~~~~v~~~~~D~~~~~ 284 (396)
T 3c0k_A 219 VENKRVLNCFSYTGGFAVSALMGGC--SQVVSVDTSQEALDIARQNVEL------------NKLDLSKAEFVRDDVFKLL 284 (396)
T ss_dssp CTTCEEEEESCTTCSHHHHHHHTTC--SEEEEEESCHHHHHHHHHHHHH------------TTCCGGGEEEEESCHHHHH
T ss_pred hCCCeEEEeeccCCHHHHHHHHCCC--CEEEEEECCHHHHHHHHHHHHH------------cCCCccceEEEECCHHHHH
Confidence 4678999999999999999998762 6999999999999999987652 233 3 7999999998753
Q ss_pred CC----CCCccEEEEcc--------ccccCChhHHHHHHHHHHHccCCC-EEEEEec
Q 002218 790 SR----LHGFDIGTCLE--------VIEHMEEDEASQFGNIVLSSFRPR-ILIVSTP 833 (952)
Q Consensus 790 f~----d~sFDVVVcie--------VIEHL~dD~l~~L~eeI~RvLKPG-~LIISTP 833 (952)
.. ...||+|++.- .+.+..... ..+...+.+.|+|| .+++++.
T Consensus 285 ~~~~~~~~~fD~Ii~dpP~~~~~~~~~~~~~~~~-~~~l~~~~~~LkpgG~l~~~~~ 340 (396)
T 3c0k_A 285 RTYRDRGEKFDVIVMDPPKFVENKSQLMGACRGY-KDINMLAIQLLNEGGILLTFSC 340 (396)
T ss_dssp HHHHHTTCCEEEEEECCSSTTTCSSSSSCCCTHH-HHHHHHHHHTEEEEEEEEEEEC
T ss_pred HHHHhcCCCCCEEEECCCCCCCChhHHHHHHHHH-HHHHHHHHHhcCCCcEEEEEeC
Confidence 22 46899999852 112222233 34445699999999 6666553
No 211
>3sso_A Methyltransferase; macrolide, natural product, rossman fold; HET: SAH; 1.90A {Micromonospora griseorubida} PDB: 3ssn_A* 3ssm_A*
Probab=98.87 E-value=1.6e-09 Score=121.91 Aligned_cols=125 Identities=15% Similarity=0.138 Sum_probs=85.4
Q ss_pred hhhhhhcCC-chhHHHHHHHHHHHhhcCCCCEEEEEcCc------cchHHHHHhcCCCCCceEEEEeCChHHHHHHHHHH
Q 002218 686 DRMEQALFS-PPLSKQRVEYALQHIKESCATTLVDFGCG------SGSLLDSLLDYPTALEKIVGVDISQKSLSRAAKII 758 (952)
Q Consensus 686 eRye~~~F~-PPL~~QR~efVldlL~~~k~krVLDIGCG------eG~ll~~LAr~g~~~~qVVGVDISeemLe~ArkrL 758 (952)
++|....+. ...+...|+.++..+. .++.+||||||| +|..+..+++...+..+|+|||+|+.|. .
T Consensus 189 ~~Y~tDK~~~~h~y~~~Ye~lL~~l~-~~~~rVLDIGCG~~~~~~TGG~Sl~la~~~fP~a~V~GVDiSp~m~------~ 261 (419)
T 3sso_A 189 SRYFTPKFGFLHWFTPHYDRHFRDYR-NQQVRVLEIGVGGYKHPEWGGGSLRMWKSFFPRGQIYGLDIMDKSH------V 261 (419)
T ss_dssp HHTTCTTBSSSCBCHHHHHHHHGGGT-TSCCEEEEECCSCTTCSSCCCHHHHHHHHHCTTCEEEEEESSCCGG------G
T ss_pred HHhCCCcccccchHHHHHHHHHHhhc-CCCCEEEEEecCCCcCCCCCHHHHHHHHHhCCCCEEEEEECCHHHh------h
Confidence 445444443 3444555555555443 356899999999 6666665654311347999999999972 0
Q ss_pred hhhhhcccccCCCCCCCccEEEEEcCccccCCC------CCCccEEEEccccccCChhHHHHHHHHHHHccCCC-EEEEE
Q 002218 759 HSKLSKKLDAAVPCTDVKSAVLFDGSITVFDSR------LHGFDIGTCLEVIEHMEEDEASQFGNIVLSSFRPR-ILIVS 831 (952)
Q Consensus 759 sa~la~~~~~l~Pr~~~~nVtf~qGDa~dLpf~------d~sFDVVVcieVIEHL~dD~l~~L~eeI~RvLKPG-~LIIS 831 (952)
...+++++++|+.++++. +++||+|++... +|+ .+....| ++++++|||| .+++.
T Consensus 262 ---------------~~~rI~fv~GDa~dlpf~~~l~~~d~sFDlVisdgs-H~~-~d~~~aL-~el~rvLKPGGvlVi~ 323 (419)
T 3sso_A 262 ---------------DELRIRTIQGDQNDAEFLDRIARRYGPFDIVIDDGS-HIN-AHVRTSF-AALFPHVRPGGLYVIE 323 (419)
T ss_dssp ---------------CBTTEEEEECCTTCHHHHHHHHHHHCCEEEEEECSC-CCH-HHHHHHH-HHHGGGEEEEEEEEEE
T ss_pred ---------------cCCCcEEEEecccccchhhhhhcccCCccEEEECCc-ccc-hhHHHHH-HHHHHhcCCCeEEEEE
Confidence 124899999999998776 689999999654 444 3554555 5799999999 77777
Q ss_pred ecCC
Q 002218 832 TPNY 835 (952)
Q Consensus 832 TPN~ 835 (952)
....
T Consensus 324 Dl~t 327 (419)
T 3sso_A 324 DMWT 327 (419)
T ss_dssp CGGG
T ss_pred eccc
Confidence 6553
No 212
>2plw_A Ribosomal RNA methyltransferase, putative; malaria, SAM, structural genomics, structural genomics consortium, SGC; HET: SAM; 1.70A {Plasmodium falciparum}
Probab=98.87 E-value=8.2e-09 Score=101.30 Aligned_cols=100 Identities=17% Similarity=0.213 Sum_probs=73.7
Q ss_pred CCCCEEEEEcCccchHHHHHhcCCCC-CceEEEEeCChHHHHHHHHHHhhhhhcccccCCCCCCCccEEEEEcCccccC-
Q 002218 712 SCATTLVDFGCGSGSLLDSLLDYPTA-LEKIVGVDISQKSLSRAAKIIHSKLSKKLDAAVPCTDVKSAVLFDGSITVFD- 789 (952)
Q Consensus 712 ~k~krVLDIGCGeG~ll~~LAr~g~~-~~qVVGVDISeemLe~ArkrLsa~la~~~~~l~Pr~~~~nVtf~qGDa~dLp- 789 (952)
.++.+|||+|||+|.++..+++..++ ..+|+|+|+|+.. ...++++.++|+.+.+
T Consensus 21 ~~~~~vLDlGcG~G~~~~~l~~~~~~~~~~v~gvD~s~~~-----------------------~~~~v~~~~~d~~~~~~ 77 (201)
T 2plw_A 21 KKNKIILDIGCYPGSWCQVILERTKNYKNKIIGIDKKIMD-----------------------PIPNVYFIQGEIGKDNM 77 (201)
T ss_dssp CTTEEEEEESCTTCHHHHHHHHHTTTSCEEEEEEESSCCC-----------------------CCTTCEEEECCTTTTSS
T ss_pred CCCCEEEEeCCCCCHHHHHHHHHcCCCCceEEEEeCCccC-----------------------CCCCceEEEccccchhh
Confidence 35679999999999999999876421 3799999999831 0136889999998876
Q ss_pred ------------------------CCCCCccEEEEccccccCCh---hHH------HHHHHHHHHccCCC-EEEEEecC
Q 002218 790 ------------------------SRLHGFDIGTCLEVIEHMEE---DEA------SQFGNIVLSSFRPR-ILIVSTPN 834 (952)
Q Consensus 790 ------------------------f~d~sFDVVVcieVIEHL~d---D~l------~~L~eeI~RvLKPG-~LIISTPN 834 (952)
+....||+|++...+++... +.. ..+.+++.++|||| .+++.+..
T Consensus 78 ~~~~~~~~i~~~~~~~~~~~~~~~~~~~~fD~v~~~~~~~~~g~~~~d~~~~~~~~~~~l~~~~~~LkpgG~lv~~~~~ 156 (201)
T 2plw_A 78 NNIKNINYIDNMNNNSVDYKLKEILQDKKIDIILSDAAVPCIGNKIDDHLNSCELTLSITHFMEQYINIGGTYIVKMYL 156 (201)
T ss_dssp CCC-----------CHHHHHHHHHHTTCCEEEEEECCCCCCCSCHHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEEEEC
T ss_pred hhhccccccccccchhhHHHHHhhcCCCcccEEEeCCCcCCCCCcccCHHHHHHHHHHHHHHHHHHccCCCEEEEEEeC
Confidence 45678999999887776431 211 12456799999999 77766654
No 213
>2b78_A Hypothetical protein SMU.776; structure genomics, methyltransferase, caries, structural genomics, unknown function; 2.00A {Streptococcus mutans} SCOP: b.122.1.9 c.66.1.51 PDB: 3ldf_A*
Probab=98.87 E-value=1.5e-08 Score=112.21 Aligned_cols=108 Identities=10% Similarity=0.040 Sum_probs=77.8
Q ss_pred CCCCEEEEEcCccchHHHHHhcCCCCCceEEEEeCChHHHHHHHHHHhhhhhcccccCCCCCCCc--cEEEEEcCccccC
Q 002218 712 SCATTLVDFGCGSGSLLDSLLDYPTALEKIVGVDISQKSLSRAAKIIHSKLSKKLDAAVPCTDVK--SAVLFDGSITVFD 789 (952)
Q Consensus 712 ~k~krVLDIGCGeG~ll~~LAr~g~~~~qVVGVDISeemLe~ArkrLsa~la~~~~~l~Pr~~~~--nVtf~qGDa~dLp 789 (952)
.++.+|||+|||+|.++..+++.+. .+|+|||+|+.+++.|++++.. .+.. +++++++|+.+..
T Consensus 211 ~~~~~VLDl~cGtG~~sl~la~~ga--~~V~~vD~s~~al~~A~~N~~~------------n~~~~~~v~~~~~D~~~~l 276 (385)
T 2b78_A 211 AAGKTVLNLFSYTAAFSVAAAMGGA--MATTSVDLAKRSRALSLAHFEA------------NHLDMANHQLVVMDVFDYF 276 (385)
T ss_dssp TBTCEEEEETCTTTHHHHHHHHTTB--SEEEEEESCTTHHHHHHHHHHH------------TTCCCTTEEEEESCHHHHH
T ss_pred cCCCeEEEEeeccCHHHHHHHHCCC--CEEEEEECCHHHHHHHHHHHHH------------cCCCccceEEEECCHHHHH
Confidence 4678999999999999999998762 5899999999999999987652 2333 7999999997632
Q ss_pred C----CCCCccEEEEcccc-----ccCCh--hHHHHHHHHHHHccCCC-EEEEEec
Q 002218 790 S----RLHGFDIGTCLEVI-----EHMEE--DEASQFGNIVLSSFRPR-ILIVSTP 833 (952)
Q Consensus 790 f----~d~sFDVVVcieVI-----EHL~d--D~l~~L~eeI~RvLKPG-~LIISTP 833 (952)
. ....||+|++.--. .++.. .....+...+.++|+|| .+++++.
T Consensus 277 ~~~~~~~~~fD~Ii~DPP~~~~~~~~~~~~~~~~~~ll~~~~~~L~pgG~l~~~~~ 332 (385)
T 2b78_A 277 KYARRHHLTYDIIIIDPPSFARNKKEVFSVSKDYHKLIRQGLEILSENGLIIASTN 332 (385)
T ss_dssp HHHHHTTCCEEEEEECCCCC-----CCCCHHHHHHHHHHHHHHTEEEEEEEEEEEC
T ss_pred HHHHHhCCCccEEEECCCCCCCChhhHHHHHHHHHHHHHHHHHhcCCCcEEEEEeC
Confidence 1 24589999983211 22221 12233455688999999 6666553
No 214
>2bm8_A Cephalosporin hydroxylase CMCI; cephamycin biosynthesis; 2.5A {Streptomyces clavuligerus} SCOP: c.66.1.50 PDB: 2bm9_A* 2br5_A* 2br4_A* 2br3_A*
Probab=98.87 E-value=2.1e-09 Score=110.91 Aligned_cols=106 Identities=13% Similarity=0.123 Sum_probs=76.7
Q ss_pred HHHHhhcCCCCEEEEEcCccchHHHHHhcC---CCCCceEEEEeCChHHHHHHHHHHhhhhhcccccCCCCCCCccEEEE
Q 002218 705 ALQHIKESCATTLVDFGCGSGSLLDSLLDY---PTALEKIVGVDISQKSLSRAAKIIHSKLSKKLDAAVPCTDVKSAVLF 781 (952)
Q Consensus 705 VldlL~~~k~krVLDIGCGeG~ll~~LAr~---g~~~~qVVGVDISeemLe~ArkrLsa~la~~~~~l~Pr~~~~nVtf~ 781 (952)
+...+...++.+|||||||+|..+..|++. ..+..+|+|||+++.|++.|+. + ..+++++
T Consensus 73 l~~~l~~~~~~~VLDiG~GtG~~t~~la~~~~~~~~~~~V~gvD~s~~~l~~a~~-~----------------~~~v~~~ 135 (236)
T 2bm8_A 73 YHDMLWELRPRTIVELGVYNGGSLAWFRDLTKIMGIDCQVIGIDRDLSRCQIPAS-D----------------MENITLH 135 (236)
T ss_dssp HHHHHHHHCCSEEEEECCTTSHHHHHHHHHHHHTTCCCEEEEEESCCTTCCCCGG-G----------------CTTEEEE
T ss_pred HHHHHHhcCCCEEEEEeCCCCHHHHHHHHhhhhcCCCCEEEEEeCChHHHHHHhc-c----------------CCceEEE
Confidence 333344446789999999999999999875 1133799999999999988851 1 1379999
Q ss_pred EcCcccc---CCCC-CCccEEEEccccccCChhHHHHHHHHHHH-ccCCC-EEEEEe
Q 002218 782 DGSITVF---DSRL-HGFDIGTCLEVIEHMEEDEASQFGNIVLS-SFRPR-ILIVST 832 (952)
Q Consensus 782 qGDa~dL---pf~d-~sFDVVVcieVIEHL~dD~l~~L~eeI~R-vLKPG-~LIIST 832 (952)
++|+.+. +... ..||+|++... |. +... +..++.+ +|||| .+++..
T Consensus 136 ~gD~~~~~~l~~~~~~~fD~I~~d~~--~~--~~~~-~l~~~~r~~LkpGG~lv~~d 187 (236)
T 2bm8_A 136 QGDCSDLTTFEHLREMAHPLIFIDNA--HA--NTFN-IMKWAVDHLLEEGDYFIIED 187 (236)
T ss_dssp ECCSSCSGGGGGGSSSCSSEEEEESS--CS--SHHH-HHHHHHHHTCCTTCEEEECS
T ss_pred ECcchhHHHHHhhccCCCCEEEECCc--hH--hHHH-HHHHHHHhhCCCCCEEEEEe
Confidence 9999884 4333 37999998655 43 3333 4456887 99999 666654
No 215
>2i7c_A Spermidine synthase; transferase, structural genomics consor; HET: AAT 1PG; 1.71A {Plasmodium falciparum} PDB: 2hte_A* 3b7p_A* 3rie_A* 2pwp_A*
Probab=98.85 E-value=8.3e-09 Score=109.52 Aligned_cols=114 Identities=12% Similarity=0.174 Sum_probs=81.6
Q ss_pred CCCCEEEEEcCccchHHHHHhcCCCCCceEEEEeCChHHHHHHHHHHhhhhhcccccCCCCCCCccEEEEEcCccccC-C
Q 002218 712 SCATTLVDFGCGSGSLLDSLLDYPTALEKIVGVDISQKSLSRAAKIIHSKLSKKLDAAVPCTDVKSAVLFDGSITVFD-S 790 (952)
Q Consensus 712 ~k~krVLDIGCGeG~ll~~LAr~g~~~~qVVGVDISeemLe~ArkrLsa~la~~~~~l~Pr~~~~nVtf~qGDa~dLp-f 790 (952)
.++++|||||||+|.++..+++.. +..+|++||+++.+++.|++++..... ....++++++.+|+.+.. .
T Consensus 77 ~~~~~VLdiG~G~G~~~~~l~~~~-~~~~v~~vDid~~~i~~a~~~~~~~~~--------~~~~~~v~~~~~D~~~~l~~ 147 (283)
T 2i7c_A 77 KEPKNVLVVGGGDGGIIRELCKYK-SVENIDICEIDETVIEVSKIYFKNISC--------GYEDKRVNVFIEDASKFLEN 147 (283)
T ss_dssp SSCCEEEEEECTTSHHHHHHTTCT-TCCEEEEEESCHHHHHHHHHHCTTTSG--------GGGSTTEEEEESCHHHHHHH
T ss_pred CCCCeEEEEeCCcCHHHHHHHHcC-CCCEEEEEECCHHHHHHHHHHhHHhcc--------ccCCCcEEEEECChHHHHHh
Confidence 356899999999999999999875 457999999999999999887532100 001358999999997642 2
Q ss_pred CCCCccEEEEccccccCChhHH--HHHHHHHHHccCCC-EEEEEecC
Q 002218 791 RLHGFDIGTCLEVIEHMEEDEA--SQFGNIVLSSFRPR-ILIVSTPN 834 (952)
Q Consensus 791 ~d~sFDVVVcieVIEHL~dD~l--~~L~eeI~RvLKPG-~LIISTPN 834 (952)
..+.||+|++.....+.+...+ ..+.+.+.++|+|| .+++.+.+
T Consensus 148 ~~~~fD~Ii~d~~~~~~~~~~l~~~~~l~~~~~~L~pgG~lv~~~~~ 194 (283)
T 2i7c_A 148 VTNTYDVIIVDSSDPIGPAETLFNQNFYEKIYNALKPNGYCVAQCES 194 (283)
T ss_dssp CCSCEEEEEEECCCTTTGGGGGSSHHHHHHHHHHEEEEEEEEEECCC
T ss_pred CCCCceEEEEcCCCCCCcchhhhHHHHHHHHHHhcCCCcEEEEECCC
Confidence 3578999998543322222222 45667899999999 66655443
No 216
>2o07_A Spermidine synthase; structural genomics, structural genomics consortium, SGC, transferase; HET: SPD MTA; 1.89A {Homo sapiens} SCOP: c.66.1.17 PDB: 2o06_A* 2o05_A* 2o0l_A* 3rw9_A*
Probab=98.85 E-value=9.5e-09 Score=110.60 Aligned_cols=112 Identities=13% Similarity=0.224 Sum_probs=79.3
Q ss_pred CCCCEEEEEcCccchHHHHHhcCCCCCceEEEEeCChHHHHHHHHHHhhhhhcccccCCCCCCCccEEEEEcCccc-cCC
Q 002218 712 SCATTLVDFGCGSGSLLDSLLDYPTALEKIVGVDISQKSLSRAAKIIHSKLSKKLDAAVPCTDVKSAVLFDGSITV-FDS 790 (952)
Q Consensus 712 ~k~krVLDIGCGeG~ll~~LAr~g~~~~qVVGVDISeemLe~ArkrLsa~la~~~~~l~Pr~~~~nVtf~qGDa~d-Lpf 790 (952)
..+++|||||||+|.++..+++.. +..+|++||+++.+++.|++++...... ...++++++.+|+.+ ++.
T Consensus 94 ~~~~~VLdiG~G~G~~~~~l~~~~-~~~~v~~vDid~~~i~~ar~~~~~~~~~--------~~~~rv~v~~~Da~~~l~~ 164 (304)
T 2o07_A 94 PNPRKVLIIGGGDGGVLREVVKHP-SVESVVQCEIDEDVIQVSKKFLPGMAIG--------YSSSKLTLHVGDGFEFMKQ 164 (304)
T ss_dssp SSCCEEEEEECTTSHHHHHHTTCT-TCCEEEEEESCHHHHHHHHHHCHHHHGG--------GGCTTEEEEESCHHHHHHT
T ss_pred CCCCEEEEECCCchHHHHHHHHcC-CCCEEEEEECCHHHHHHHHHHhHHhhcc--------cCCCcEEEEECcHHHHHhh
Confidence 466899999999999999999875 4579999999999999999876421000 013579999999876 344
Q ss_pred CCCCccEEEEccccccCChh---HHHHHHHHHHHccCCC-EEEEEec
Q 002218 791 RLHGFDIGTCLEVIEHMEED---EASQFGNIVLSSFRPR-ILIVSTP 833 (952)
Q Consensus 791 ~d~sFDVVVcieVIEHL~dD---~l~~L~eeI~RvLKPG-~LIISTP 833 (952)
..+.||+|++... .+..+. ....+.+.+.++|+|| .+++.+.
T Consensus 165 ~~~~fD~Ii~d~~-~~~~~~~~l~~~~~l~~~~~~LkpgG~lv~~~~ 210 (304)
T 2o07_A 165 NQDAFDVIITDSS-DPMGPAESLFKESYYQLMKTALKEDGVLCCQGE 210 (304)
T ss_dssp CSSCEEEEEEECC------------CHHHHHHHHHEEEEEEEEEEEE
T ss_pred CCCCceEEEECCC-CCCCcchhhhHHHHHHHHHhccCCCeEEEEecC
Confidence 4678999998543 332211 1134566799999999 6666543
No 217
>1zq9_A Probable dimethyladenosine transferase; SGC, structural genomics, structural genomics consortium; HET: SAM; 1.90A {Homo sapiens} SCOP: c.66.1.24
Probab=98.84 E-value=1.6e-08 Score=107.35 Aligned_cols=84 Identities=14% Similarity=0.242 Sum_probs=68.5
Q ss_pred HHHHHHHhhcCCCCEEEEEcCccchHHHHHhcCCCCCceEEEEeCChHHHHHHHHHHhhhhhcccccCCCCCCCccEEEE
Q 002218 702 VEYALQHIKESCATTLVDFGCGSGSLLDSLLDYPTALEKIVGVDISQKSLSRAAKIIHSKLSKKLDAAVPCTDVKSAVLF 781 (952)
Q Consensus 702 ~efVldlL~~~k~krVLDIGCGeG~ll~~LAr~g~~~~qVVGVDISeemLe~ArkrLsa~la~~~~~l~Pr~~~~nVtf~ 781 (952)
.+.+++.+...++.+|||||||+|.++..|++.+ .+|+|||+|+.|++.+++++... ....+++++
T Consensus 17 ~~~i~~~~~~~~~~~VLDiG~G~G~lt~~L~~~~---~~v~~vD~~~~~~~~a~~~~~~~-----------~~~~~v~~~ 82 (285)
T 1zq9_A 17 INSIIDKAALRPTDVVLEVGPGTGNMTVKLLEKA---KKVVACELDPRLVAELHKRVQGT-----------PVASKLQVL 82 (285)
T ss_dssp HHHHHHHTCCCTTCEEEEECCTTSTTHHHHHHHS---SEEEEEESCHHHHHHHHHHHTTS-----------TTGGGEEEE
T ss_pred HHHHHHhcCCCCCCEEEEEcCcccHHHHHHHhhC---CEEEEEECCHHHHHHHHHHHHhc-----------CCCCceEEE
Confidence 3456666666678899999999999999999887 69999999999999998875321 112479999
Q ss_pred EcCccccCCCCCCccEEEEc
Q 002218 782 DGSITVFDSRLHGFDIGTCL 801 (952)
Q Consensus 782 qGDa~dLpf~d~sFDVVVci 801 (952)
++|+.+++++ .||+|++.
T Consensus 83 ~~D~~~~~~~--~fD~vv~n 100 (285)
T 1zq9_A 83 VGDVLKTDLP--FFDTCVAN 100 (285)
T ss_dssp ESCTTTSCCC--CCSEEEEE
T ss_pred Ecceecccch--hhcEEEEe
Confidence 9999887654 79999995
No 218
>1xj5_A Spermidine synthase 1; structural genomics, protein structure initiative, CESG, AT1G23820, putrescine aminopropyl transferase, SPDS1; 2.70A {Arabidopsis thaliana} SCOP: c.66.1.17 PDB: 2q41_A
Probab=98.83 E-value=1.1e-08 Score=111.72 Aligned_cols=113 Identities=14% Similarity=0.155 Sum_probs=79.9
Q ss_pred CCCCEEEEEcCccchHHHHHhcCCCCCceEEEEeCChHHHHHHHHHHhhhhhcccccCCCCCCCccEEEEEcCcccc-C-
Q 002218 712 SCATTLVDFGCGSGSLLDSLLDYPTALEKIVGVDISQKSLSRAAKIIHSKLSKKLDAAVPCTDVKSAVLFDGSITVF-D- 789 (952)
Q Consensus 712 ~k~krVLDIGCGeG~ll~~LAr~g~~~~qVVGVDISeemLe~ArkrLsa~la~~~~~l~Pr~~~~nVtf~qGDa~dL-p- 789 (952)
..+++|||||||+|.++..|++.. +..+|++||+|+.+++.|++++...... ...++++++++|+.+. +
T Consensus 119 ~~~~~VLdIG~G~G~~a~~la~~~-~~~~V~~VDis~~~l~~Ar~~~~~~~~g--------l~~~rv~~~~~D~~~~l~~ 189 (334)
T 1xj5_A 119 PNPKKVLVIGGGDGGVLREVARHA-SIEQIDMCEIDKMVVDVSKQFFPDVAIG--------YEDPRVNLVIGDGVAFLKN 189 (334)
T ss_dssp SCCCEEEEETCSSSHHHHHHTTCT-TCCEEEEEESCHHHHHHHHHHCHHHHGG--------GGSTTEEEEESCHHHHHHT
T ss_pred CCCCEEEEECCCccHHHHHHHHcC-CCCEEEEEECCHHHHHHHHHHHHhhccc--------cCCCcEEEEECCHHHHHHh
Confidence 456899999999999999999875 3479999999999999999876421000 0124799999998764 2
Q ss_pred CCCCCccEEEEccccccCChhH--HHHHHHHHHHccCCC-EEEEEec
Q 002218 790 SRLHGFDIGTCLEVIEHMEEDE--ASQFGNIVLSSFRPR-ILIVSTP 833 (952)
Q Consensus 790 f~d~sFDVVVcieVIEHL~dD~--l~~L~eeI~RvLKPG-~LIISTP 833 (952)
...+.||+|++...-.+-..+. ...+.+.+.++|+|| .+++.+.
T Consensus 190 ~~~~~fDlIi~d~~~p~~~~~~l~~~~~l~~~~~~LkpgG~lv~~~~ 236 (334)
T 1xj5_A 190 AAEGSYDAVIVDSSDPIGPAKELFEKPFFQSVARALRPGGVVCTQAE 236 (334)
T ss_dssp SCTTCEEEEEECCCCTTSGGGGGGSHHHHHHHHHHEEEEEEEEEECC
T ss_pred ccCCCccEEEECCCCccCcchhhhHHHHHHHHHHhcCCCcEEEEecC
Confidence 2357899999854311111111 245566799999999 5555433
No 219
>1iy9_A Spermidine synthase; rossmann fold, structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.30A {Bacillus subtilis} SCOP: c.66.1.17
Probab=98.83 E-value=7.6e-09 Score=109.52 Aligned_cols=112 Identities=16% Similarity=0.194 Sum_probs=80.3
Q ss_pred CCCCEEEEEcCccchHHHHHhcCCCCCceEEEEeCChHHHHHHHHHHhhhhhcccccCCCCCCCccEEEEEcCcccc-CC
Q 002218 712 SCATTLVDFGCGSGSLLDSLLDYPTALEKIVGVDISQKSLSRAAKIIHSKLSKKLDAAVPCTDVKSAVLFDGSITVF-DS 790 (952)
Q Consensus 712 ~k~krVLDIGCGeG~ll~~LAr~g~~~~qVVGVDISeemLe~ArkrLsa~la~~~~~l~Pr~~~~nVtf~qGDa~dL-pf 790 (952)
..+++|||||||+|.++..+++.. +..+|++||+++.+++.|++++..... ....++++++.+|+.+. +.
T Consensus 74 ~~~~~VLdiG~G~G~~~~~l~~~~-~~~~v~~vEid~~~v~~ar~~~~~~~~--------~~~~~rv~v~~~D~~~~l~~ 144 (275)
T 1iy9_A 74 PNPEHVLVVGGGDGGVIREILKHP-SVKKATLVDIDGKVIEYSKKFLPSIAG--------KLDDPRVDVQVDDGFMHIAK 144 (275)
T ss_dssp SSCCEEEEESCTTCHHHHHHTTCT-TCSEEEEEESCHHHHHHHHHHCHHHHT--------TTTSTTEEEEESCSHHHHHT
T ss_pred CCCCEEEEECCchHHHHHHHHhCC-CCceEEEEECCHHHHHHHHHHhHhhcc--------ccCCCceEEEECcHHHHHhh
Confidence 357899999999999999999874 347999999999999999987642100 01235899999998763 33
Q ss_pred CCCCccEEEEccccccCChh-H--HHHHHHHHHHccCCC-EEEEEec
Q 002218 791 RLHGFDIGTCLEVIEHMEED-E--ASQFGNIVLSSFRPR-ILIVSTP 833 (952)
Q Consensus 791 ~d~sFDVVVcieVIEHL~dD-~--l~~L~eeI~RvLKPG-~LIISTP 833 (952)
..+.||+|++.-. .+..+. . ...|.+.+.++|+|| .+++.+.
T Consensus 145 ~~~~fD~Ii~d~~-~~~~~~~~l~~~~~~~~~~~~L~pgG~lv~~~~ 190 (275)
T 1iy9_A 145 SENQYDVIMVDST-EPVGPAVNLFTKGFYAGIAKALKEDGIFVAQTD 190 (275)
T ss_dssp CCSCEEEEEESCS-SCCSCCCCCSTTHHHHHHHHHEEEEEEEEEECC
T ss_pred CCCCeeEEEECCC-CCCCcchhhhHHHHHHHHHHhcCCCcEEEEEcC
Confidence 4578999999533 332211 0 124556799999999 6666543
No 220
>1uir_A Polyamine aminopropyltransferase; spermidien synthase, spermine synthase, riken STR genomics/proteomics initiative, RSGI; 2.00A {Thermus thermophilus} SCOP: c.66.1.17 PDB: 3anx_A*
Probab=98.82 E-value=1.2e-08 Score=109.91 Aligned_cols=113 Identities=19% Similarity=0.208 Sum_probs=81.1
Q ss_pred CCCCEEEEEcCccchHHHHHhcCCCCCceEEEEeCChHHHHHHHHHHhhhhhcccccCCCCCCCccEEEEEcCcccc-CC
Q 002218 712 SCATTLVDFGCGSGSLLDSLLDYPTALEKIVGVDISQKSLSRAAKIIHSKLSKKLDAAVPCTDVKSAVLFDGSITVF-DS 790 (952)
Q Consensus 712 ~k~krVLDIGCGeG~ll~~LAr~g~~~~qVVGVDISeemLe~ArkrLsa~la~~~~~l~Pr~~~~nVtf~qGDa~dL-pf 790 (952)
..+++|||||||+|.++..+++.. +..+|++||+++.+++.|++++...... ....++++++.+|+.+. +.
T Consensus 76 ~~~~~VLdiG~G~G~~~~~l~~~~-~~~~v~~vDid~~~i~~ar~~~~~~~~~-------~~~~~~v~~~~~D~~~~l~~ 147 (314)
T 1uir_A 76 PEPKRVLIVGGGEGATLREVLKHP-TVEKAVMVDIDGELVEVAKRHMPEWHQG-------AFDDPRAVLVIDDARAYLER 147 (314)
T ss_dssp SCCCEEEEEECTTSHHHHHHTTST-TCCEEEEEESCHHHHHHHHHHCHHHHTT-------GGGCTTEEEEESCHHHHHHH
T ss_pred CCCCeEEEEcCCcCHHHHHHHhcC-CCCEEEEEECCHHHHHHHHHHhHhhccc-------cccCCceEEEEchHHHHHHh
Confidence 466899999999999999999874 3479999999999999999875421000 00135899999999773 33
Q ss_pred CCCCccEEEEcccccc---CChhH--HHHHHHHHHHccCCC-EEEEEe
Q 002218 791 RLHGFDIGTCLEVIEH---MEEDE--ASQFGNIVLSSFRPR-ILIVST 832 (952)
Q Consensus 791 ~d~sFDVVVcieVIEH---L~dD~--l~~L~eeI~RvLKPG-~LIIST 832 (952)
..+.||+|++....++ -+... ...+.+.+.++|+|| .+++.+
T Consensus 148 ~~~~fD~Ii~d~~~~~~~~~~~~~l~~~~~l~~~~~~LkpgG~lv~~~ 195 (314)
T 1uir_A 148 TEERYDVVIIDLTDPVGEDNPARLLYTVEFYRLVKAHLNPGGVMGMQT 195 (314)
T ss_dssp CCCCEEEEEEECCCCBSTTCGGGGGSSHHHHHHHHHTEEEEEEEEEEE
T ss_pred cCCCccEEEECCCCcccccCcchhccHHHHHHHHHHhcCCCcEEEEEc
Confidence 4678999999655433 11111 145566899999998 555543
No 221
>2yxl_A PH0851 protein, 450AA long hypothetical FMU protein; FMU-homolog, methyltransferase, structural genomics, NPPSFA; HET: SFG; 2.55A {Pyrococcus horikoshii}
Probab=98.82 E-value=1.6e-08 Score=114.04 Aligned_cols=119 Identities=14% Similarity=0.078 Sum_probs=89.7
Q ss_pred HHHHHhhcCCCCEEEEEcCccchHHHHHhcCCCCCceEEEEeCChHHHHHHHHHHhhhhhcccccCCCCCCCccEEEEEc
Q 002218 704 YALQHIKESCATTLVDFGCGSGSLLDSLLDYPTALEKIVGVDISQKSLSRAAKIIHSKLSKKLDAAVPCTDVKSAVLFDG 783 (952)
Q Consensus 704 fVldlL~~~k~krVLDIGCGeG~ll~~LAr~g~~~~qVVGVDISeemLe~ArkrLsa~la~~~~~l~Pr~~~~nVtf~qG 783 (952)
++...+...++.+|||+|||+|..+..+++..+...+|+|+|+++.+++.+++++.. .+..++++.++
T Consensus 250 l~~~~l~~~~g~~VLDlgaG~G~~t~~la~~~~~~~~v~a~D~s~~~l~~~~~~~~~------------~g~~~v~~~~~ 317 (450)
T 2yxl_A 250 VASIVLDPKPGETVVDLAAAPGGKTTHLAELMKNKGKIYAFDVDKMRMKRLKDFVKR------------MGIKIVKPLVK 317 (450)
T ss_dssp HHHHHHCCCTTCEEEESSCTTCHHHHHHHHHTTTCSEEEEECSCHHHHHHHHHHHHH------------TTCCSEEEECS
T ss_pred HHHHhcCCCCcCEEEEeCCCccHHHHHHHHHcCCCCEEEEEcCCHHHHHHHHHHHHH------------cCCCcEEEEEc
Confidence 445556666788999999999999999987542226899999999999999987652 24457999999
Q ss_pred CccccC--CCCCCccEEEE------ccccccCChhH--------------HHHHHHHHHHccCCC-EEEEEecC
Q 002218 784 SITVFD--SRLHGFDIGTC------LEVIEHMEEDE--------------ASQFGNIVLSSFRPR-ILIVSTPN 834 (952)
Q Consensus 784 Da~dLp--f~d~sFDVVVc------ieVIEHL~dD~--------------l~~L~eeI~RvLKPG-~LIISTPN 834 (952)
|+.+++ +..+.||+|++ .+++.+.++.. ...+.+.+.++|||| .++++|..
T Consensus 318 D~~~~~~~~~~~~fD~Vl~D~Pcsg~g~~~~~pd~~~~~~~~~~~~l~~~q~~iL~~a~~~LkpGG~lvy~tcs 391 (450)
T 2yxl_A 318 DARKAPEIIGEEVADKVLLDAPCTSSGTIGKNPELRWRLREDKINEMSQLQRELLESAARLVKPGGRLLYTTCS 391 (450)
T ss_dssp CTTCCSSSSCSSCEEEEEEECCCCCGGGTTTSTTHHHHCCTTSHHHHHHHHHHHHHHHHTTEEEEEEEEEEESC
T ss_pred ChhhcchhhccCCCCEEEEcCCCCCCeeeccChhhhhhCCHHHHHHHHHHHHHHHHHHHHhcCCCcEEEEEeCC
Confidence 998876 33468999996 45666554211 135566799999998 77777764
No 222
>1uwv_A 23S rRNA (uracil-5-)-methyltransferase RUMA; RNA modification, iron-sulfur cluster, RNA processing; 1.95A {Escherichia coli} SCOP: b.40.4.12 c.66.1.40 PDB: 2bh2_A*
Probab=98.81 E-value=2.6e-08 Score=111.81 Aligned_cols=90 Identities=16% Similarity=0.234 Sum_probs=73.3
Q ss_pred hHHHHHHHHHHHhhcCCCCEEEEEcCccchHHHHHhcCCCCCceEEEEeCChHHHHHHHHHHhhhhhcccccCCCCCCCc
Q 002218 697 LSKQRVEYALQHIKESCATTLVDFGCGSGSLLDSLLDYPTALEKIVGVDISQKSLSRAAKIIHSKLSKKLDAAVPCTDVK 776 (952)
Q Consensus 697 L~~QR~efVldlL~~~k~krVLDIGCGeG~ll~~LAr~g~~~~qVVGVDISeemLe~ArkrLsa~la~~~~~l~Pr~~~~ 776 (952)
.....++.+.+.+...++.+|||+|||+|.++..|++.+ .+|+|+|+|+.+++.|++++.. .+..
T Consensus 270 ~~e~l~~~~~~~l~~~~~~~VLDlgcG~G~~~~~la~~~---~~V~gvD~s~~al~~A~~n~~~------------~~~~ 334 (433)
T 1uwv_A 270 VNQKMVARALEWLDVQPEDRVLDLFCGMGNFTLPLATQA---ASVVGVEGVPALVEKGQQNARL------------NGLQ 334 (433)
T ss_dssp HHHHHHHHHHHHHTCCTTCEEEEESCTTTTTHHHHHTTS---SEEEEEESCHHHHHHHHHHHHH------------TTCC
T ss_pred HHHHHHHHHHHhhcCCCCCEEEECCCCCCHHHHHHHhhC---CEEEEEeCCHHHHHHHHHHHHH------------cCCC
Confidence 455566777777766677899999999999999999886 7999999999999999987642 2344
Q ss_pred cEEEEEcCccc----cCCCCCCccEEEEc
Q 002218 777 SAVLFDGSITV----FDSRLHGFDIGTCL 801 (952)
Q Consensus 777 nVtf~qGDa~d----Lpf~d~sFDVVVci 801 (952)
+++|+++|+.+ +++.++.||+|++.
T Consensus 335 ~v~f~~~d~~~~l~~~~~~~~~fD~Vv~d 363 (433)
T 1uwv_A 335 NVTFYHENLEEDVTKQPWAKNGFDKVLLD 363 (433)
T ss_dssp SEEEEECCTTSCCSSSGGGTTCCSEEEEC
T ss_pred ceEEEECCHHHHhhhhhhhcCCCCEEEEC
Confidence 89999999987 23455789999983
No 223
>2h1r_A Dimethyladenosine transferase, putative; SGC toronto dimethyladenosine transferase, structural genomics, structural genomics consortium; 1.89A {Plasmodium falciparum}
Probab=98.81 E-value=1.8e-08 Score=107.90 Aligned_cols=86 Identities=20% Similarity=0.319 Sum_probs=66.0
Q ss_pred HHHHHHHHhhcCCCCEEEEEcCccchHHHHHhcCCCCCceEEEEeCChHHHHHHHHHHhhhhhcccccCCCCCCCccEEE
Q 002218 701 RVEYALQHIKESCATTLVDFGCGSGSLLDSLLDYPTALEKIVGVDISQKSLSRAAKIIHSKLSKKLDAAVPCTDVKSAVL 780 (952)
Q Consensus 701 R~efVldlL~~~k~krVLDIGCGeG~ll~~LAr~g~~~~qVVGVDISeemLe~ArkrLsa~la~~~~~l~Pr~~~~nVtf 780 (952)
-.+.+.+.+...++.+|||||||+|.++..|++.+ .+|+|||+|+.+++.|++++.. .+..++++
T Consensus 30 i~~~i~~~~~~~~~~~VLDiG~G~G~lt~~La~~~---~~v~~vDi~~~~~~~a~~~~~~------------~~~~~v~~ 94 (299)
T 2h1r_A 30 ILDKIIYAAKIKSSDIVLEIGCGTGNLTVKLLPLA---KKVITIDIDSRMISEVKKRCLY------------EGYNNLEV 94 (299)
T ss_dssp HHHHHHHHHCCCTTCEEEEECCTTSTTHHHHTTTS---SEEEEECSCHHHHHHHHHHHHH------------TTCCCEEC
T ss_pred HHHHHHHhcCCCCcCEEEEEcCcCcHHHHHHHhcC---CEEEEEECCHHHHHHHHHHHHH------------cCCCceEE
Confidence 34456666666678899999999999999999886 7999999999999999887642 12357999
Q ss_pred EEcCccccCCCCCCccEEEEccc
Q 002218 781 FDGSITVFDSRLHGFDIGTCLEV 803 (952)
Q Consensus 781 ~qGDa~dLpf~d~sFDVVVcieV 803 (952)
+++|+.++++ ..||+|++.-.
T Consensus 95 ~~~D~~~~~~--~~~D~Vv~n~p 115 (299)
T 2h1r_A 95 YEGDAIKTVF--PKFDVCTANIP 115 (299)
T ss_dssp ----CCSSCC--CCCSEEEEECC
T ss_pred EECchhhCCc--ccCCEEEEcCC
Confidence 9999988765 48999998543
No 224
>2as0_A Hypothetical protein PH1915; RNA methyltransferase, structural genomics, PSI, protein structure initiative; 1.80A {Pyrococcus horikoshii} SCOP: b.122.1.9 c.66.1.51
Probab=98.81 E-value=2.7e-08 Score=109.79 Aligned_cols=107 Identities=14% Similarity=0.063 Sum_probs=80.0
Q ss_pred CCCEEEEEcCccchHHHHHhcCCCCCceEEEEeCChHHHHHHHHHHhhhhhcccccCCCCCCCc-cEEEEEcCccccCC-
Q 002218 713 CATTLVDFGCGSGSLLDSLLDYPTALEKIVGVDISQKSLSRAAKIIHSKLSKKLDAAVPCTDVK-SAVLFDGSITVFDS- 790 (952)
Q Consensus 713 k~krVLDIGCGeG~ll~~LAr~g~~~~qVVGVDISeemLe~ArkrLsa~la~~~~~l~Pr~~~~-nVtf~qGDa~dLpf- 790 (952)
++.+|||+|||+|.++..+++.+. .+|+|+|+|+.+++.|++++.. .+.. +++++++|+.+...
T Consensus 217 ~~~~VLDl~~G~G~~~~~la~~g~--~~v~~vD~s~~~l~~a~~n~~~------------n~~~~~v~~~~~d~~~~~~~ 282 (396)
T 2as0_A 217 PGDRVLDVFTYTGGFAIHAAIAGA--DEVIGIDKSPRAIETAKENAKL------------NGVEDRMKFIVGSAFEEMEK 282 (396)
T ss_dssp TTCEEEETTCTTTHHHHHHHHTTC--SEEEEEESCHHHHHHHHHHHHH------------TTCGGGEEEEESCHHHHHHH
T ss_pred CCCeEEEecCCCCHHHHHHHHCCC--CEEEEEeCCHHHHHHHHHHHHH------------cCCCccceEEECCHHHHHHH
Confidence 678999999999999999998752 6999999999999999987652 2333 79999999977543
Q ss_pred ---CCCCccEEEEcccc--------ccCChhHHHHHHHHHHHccCCC-EEEEEecC
Q 002218 791 ---RLHGFDIGTCLEVI--------EHMEEDEASQFGNIVLSSFRPR-ILIVSTPN 834 (952)
Q Consensus 791 ---~d~sFDVVVcieVI--------EHL~dD~l~~L~eeI~RvLKPG-~LIISTPN 834 (952)
....||+|++.--. .+.. .....+...+.++|+|| .+++.+.+
T Consensus 283 ~~~~~~~fD~Vi~dpP~~~~~~~~~~~~~-~~~~~~l~~~~~~LkpgG~lv~~~~~ 337 (396)
T 2as0_A 283 LQKKGEKFDIVVLDPPAFVQHEKDLKAGL-RAYFNVNFAGLNLVKDGGILVTCSCS 337 (396)
T ss_dssp HHHTTCCEEEEEECCCCSCSSGGGHHHHH-HHHHHHHHHHHTTEEEEEEEEEEECC
T ss_pred HHhhCCCCCEEEECCCCCCCCHHHHHHHH-HHHHHHHHHHHHhcCCCcEEEEEECC
Confidence 25689999984211 1111 22334556799999999 67777655
No 225
>2f8l_A Hypothetical protein LMO1582; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE SAM; 2.20A {Listeria monocytogenes} SCOP: c.66.1.45
Probab=98.80 E-value=1.2e-08 Score=110.42 Aligned_cols=119 Identities=17% Similarity=0.187 Sum_probs=87.4
Q ss_pred HHHHHHh-hcCCCCEEEEEcCccchHHHHHhcCCCC----CceEEEEeCChHHHHHHHHHHhhhhhcccccCCCCCCCcc
Q 002218 703 EYALQHI-KESCATTLVDFGCGSGSLLDSLLDYPTA----LEKIVGVDISQKSLSRAAKIIHSKLSKKLDAAVPCTDVKS 777 (952)
Q Consensus 703 efVldlL-~~~k~krVLDIGCGeG~ll~~LAr~g~~----~~qVVGVDISeemLe~ArkrLsa~la~~~~~l~Pr~~~~n 777 (952)
..+++.+ ...++.+|||+|||+|.++..+++.... ..+++|+|+++.+++.|+.++... +. +
T Consensus 119 ~~ll~~l~~~~~~~~VlDp~cGsG~~l~~~~~~~~~~~~~~~~v~GiDi~~~~~~~a~~n~~~~------------g~-~ 185 (344)
T 2f8l_A 119 AYLLEKVIQKKKNVSILDPACGTANLLTTVINQLELKGDVDVHASGVDVDDLLISLALVGADLQ------------RQ-K 185 (344)
T ss_dssp HHHHHHHHTTCSEEEEEETTCTTSHHHHHHHHHHHTTSSCEEEEEEEESCHHHHHHHHHHHHHH------------TC-C
T ss_pred HHHHHHhcCCCCCCEEEeCCCCccHHHHHHHHHHHHhcCCCceEEEEECCHHHHHHHHHHHHhC------------CC-C
Confidence 3344433 3335679999999999999888765421 168999999999999998875421 22 6
Q ss_pred EEEEEcCccccCCCCCCccEEEEccccccCChhHH----------------HHHHHHHHHccCCC-EEEEEecCC
Q 002218 778 AVLFDGSITVFDSRLHGFDIGTCLEVIEHMEEDEA----------------SQFGNIVLSSFRPR-ILIVSTPNY 835 (952)
Q Consensus 778 Vtf~qGDa~dLpf~d~sFDVVVcieVIEHL~dD~l----------------~~L~eeI~RvLKPG-~LIISTPN~ 835 (952)
+.+.++|..... ....||+|++.-.+.+++.++. ..|.+.+.+.|+|| .+++.+|+.
T Consensus 186 ~~i~~~D~l~~~-~~~~fD~Ii~NPPfg~~~~~~~~~~~~~~~~~g~~~~~~~~l~~~~~~Lk~gG~~~~v~p~~ 259 (344)
T 2f8l_A 186 MTLLHQDGLANL-LVDPVDVVISDLPVGYYPDDENAKTFELCREEGHSFAHFLFIEQGMRYTKPGGYLFFLVPDA 259 (344)
T ss_dssp CEEEESCTTSCC-CCCCEEEEEEECCCSEESCHHHHTTSTTCCSSSCEEHHHHHHHHHHHTEEEEEEEEEEEEGG
T ss_pred ceEEECCCCCcc-ccCCccEEEECCCCCCcCchhhhhhccccCCCCcchHHHHHHHHHHHHhCCCCEEEEEECch
Confidence 789999987643 3568999999877766653332 25667899999998 888888874
No 226
>2pt6_A Spermidine synthase; transferase, structural genomics consor SGC,dcadoMet complex; HET: S4M 1PG; 2.00A {Plasmodium falciparum} PDB: 2pss_A* 2pt9_A*
Probab=98.80 E-value=1.2e-08 Score=110.58 Aligned_cols=113 Identities=12% Similarity=0.226 Sum_probs=80.6
Q ss_pred CCCCEEEEEcCccchHHHHHhcCCCCCceEEEEeCChHHHHHHHHHHhhhhhcccccCCCCCCCccEEEEEcCcccc-CC
Q 002218 712 SCATTLVDFGCGSGSLLDSLLDYPTALEKIVGVDISQKSLSRAAKIIHSKLSKKLDAAVPCTDVKSAVLFDGSITVF-DS 790 (952)
Q Consensus 712 ~k~krVLDIGCGeG~ll~~LAr~g~~~~qVVGVDISeemLe~ArkrLsa~la~~~~~l~Pr~~~~nVtf~qGDa~dL-pf 790 (952)
..+.+|||||||+|.++..+++.. +..+|+++|+|+.+++.|++++..... ....++++++++|+.+. +.
T Consensus 115 ~~~~~VLdiG~G~G~~~~~l~~~~-~~~~v~~vDis~~~l~~ar~~~~~~~~--------~~~~~~v~~~~~D~~~~l~~ 185 (321)
T 2pt6_A 115 KEPKNVLVVGGGDGGIIRELCKYK-SVENIDICEIDETVIEVSKIYFKNISC--------GYEDKRVNVFIEDASKFLEN 185 (321)
T ss_dssp SSCCEEEEEECTTCHHHHHHTTCT-TCCEEEEEESCHHHHHHHHHHCTTTSG--------GGGSTTEEEEESCHHHHHHH
T ss_pred CCCCEEEEEcCCccHHHHHHHHcC-CCCEEEEEECCHHHHHHHHHHHHhhcc--------ccCCCcEEEEEccHHHHHhh
Confidence 356899999999999999999874 347999999999999999987542100 01135799999998764 22
Q ss_pred CCCCccEEEEccccccCChh-HH--HHHHHHHHHccCCC-EEEEEecC
Q 002218 791 RLHGFDIGTCLEVIEHMEED-EA--SQFGNIVLSSFRPR-ILIVSTPN 834 (952)
Q Consensus 791 ~d~sFDVVVcieVIEHL~dD-~l--~~L~eeI~RvLKPG-~LIISTPN 834 (952)
..+.||+|++... +++.+. .. ..+.+.+.++|+|| .+++...+
T Consensus 186 ~~~~fDvIi~d~~-~p~~~~~~l~~~~~l~~~~~~LkpgG~lv~~~~~ 232 (321)
T 2pt6_A 186 VTNTYDVIIVDSS-DPIGPAETLFNQNFYEKIYNALKPNGYCVAQCES 232 (321)
T ss_dssp CCSCEEEEEEECC-CSSSGGGGGSSHHHHHHHHHHEEEEEEEEEEECC
T ss_pred cCCCceEEEECCc-CCCCcchhhhHHHHHHHHHHhcCCCcEEEEEcCC
Confidence 3578999998532 333211 11 35566799999999 66655443
No 227
>3gjy_A Spermidine synthase; APC62791, structural genomics, PSI-2, protein structure initiative; HET: MSE; 1.47A {Corynebacterium glutamicum atcc 13032}
Probab=98.79 E-value=1.6e-08 Score=110.46 Aligned_cols=106 Identities=7% Similarity=0.028 Sum_probs=76.9
Q ss_pred CEEEEEcCccchHHHHHhcCCCCCceEEEEeCChHHHHHHHHHHhhhhhcccccCCCCCCCccEEEEEcCccccC--CCC
Q 002218 715 TTLVDFGCGSGSLLDSLLDYPTALEKIVGVDISQKSLSRAAKIIHSKLSKKLDAAVPCTDVKSAVLFDGSITVFD--SRL 792 (952)
Q Consensus 715 krVLDIGCGeG~ll~~LAr~g~~~~qVVGVDISeemLe~ArkrLsa~la~~~~~l~Pr~~~~nVtf~qGDa~dLp--f~d 792 (952)
.+|||||||+|.++..+++.. +..+|++||+++.+++.|++++.. ...++++++.+|+.++. ...
T Consensus 91 ~rVLdIG~G~G~la~~la~~~-p~~~v~~VEidp~vi~~Ar~~~~~------------~~~~rv~v~~~Da~~~l~~~~~ 157 (317)
T 3gjy_A 91 LRITHLGGGACTMARYFADVY-PQSRNTVVELDAELARLSREWFDI------------PRAPRVKIRVDDARMVAESFTP 157 (317)
T ss_dssp CEEEEESCGGGHHHHHHHHHS-TTCEEEEEESCHHHHHHHHHHSCC------------CCTTTEEEEESCHHHHHHTCCT
T ss_pred CEEEEEECCcCHHHHHHHHHC-CCcEEEEEECCHHHHHHHHHhccc------------cCCCceEEEECcHHHHHhhccC
Confidence 499999999999999999843 226899999999999999887531 12358999999998753 345
Q ss_pred CCccEEEEccccccCChhHH--HHHHHHHHHccCCC-EEEEEec
Q 002218 793 HGFDIGTCLEVIEHMEEDEA--SQFGNIVLSSFRPR-ILIVSTP 833 (952)
Q Consensus 793 ~sFDVVVcieVIEHL~dD~l--~~L~eeI~RvLKPG-~LIISTP 833 (952)
+.||+|++.....+-....+ ..|.+.+.++|+|| ++++.+.
T Consensus 158 ~~fDvIi~D~~~~~~~~~~L~t~efl~~~~r~LkpgGvlv~~~~ 201 (317)
T 3gjy_A 158 ASRDVIIRDVFAGAITPQNFTTVEFFEHCHRGLAPGGLYVANCG 201 (317)
T ss_dssp TCEEEEEECCSTTSCCCGGGSBHHHHHHHHHHEEEEEEEEEEEE
T ss_pred CCCCEEEECCCCccccchhhhHHHHHHHHHHhcCCCcEEEEEec
Confidence 78999998432221111111 35566799999999 6665554
No 228
>2b2c_A Spermidine synthase; beta-alpha, transferase; 2.50A {Caenorhabditis elegans} SCOP: c.66.1.17
Probab=98.79 E-value=1.1e-08 Score=110.81 Aligned_cols=111 Identities=17% Similarity=0.229 Sum_probs=77.3
Q ss_pred CCCCEEEEEcCccchHHHHHhcCCCCCceEEEEeCChHHHHHHHHHHhhhhhcccccCCCCCCCccEEEEEcCcccc-CC
Q 002218 712 SCATTLVDFGCGSGSLLDSLLDYPTALEKIVGVDISQKSLSRAAKIIHSKLSKKLDAAVPCTDVKSAVLFDGSITVF-DS 790 (952)
Q Consensus 712 ~k~krVLDIGCGeG~ll~~LAr~g~~~~qVVGVDISeemLe~ArkrLsa~la~~~~~l~Pr~~~~nVtf~qGDa~dL-pf 790 (952)
..+++|||||||+|.++..+++.. +..+|++||+++.+++.|++++...... ...++++++.+|+.+. +.
T Consensus 107 ~~~~~VLdIG~G~G~~~~~l~~~~-~~~~v~~vDid~~~i~~Ar~~~~~~~~~--------~~~~rv~~~~~D~~~~l~~ 177 (314)
T 2b2c_A 107 PDPKRVLIIGGGDGGILREVLKHE-SVEKVTMCEIDEMVIDVAKKFLPGMSCG--------FSHPKLDLFCGDGFEFLKN 177 (314)
T ss_dssp SSCCEEEEESCTTSHHHHHHTTCT-TCCEEEEECSCHHHHHHHHHHCTTTSGG--------GGCTTEEEECSCHHHHHHH
T ss_pred CCCCEEEEEcCCcCHHHHHHHHcC-CCCEEEEEECCHHHHHHHHHHHHHhccc--------cCCCCEEEEEChHHHHHHh
Confidence 356899999999999999999875 3579999999999999999875321000 0135799999999763 33
Q ss_pred CCCCccEEEEccccccCChhH-H--HHHHHHHHHccCCC-EEEEEe
Q 002218 791 RLHGFDIGTCLEVIEHMEEDE-A--SQFGNIVLSSFRPR-ILIVST 832 (952)
Q Consensus 791 ~d~sFDVVVcieVIEHL~dD~-l--~~L~eeI~RvLKPG-~LIIST 832 (952)
..+.||+|++.. .+|+.++. + ..+.+.+.++|+|| .+++.+
T Consensus 178 ~~~~fD~Ii~d~-~~~~~~~~~l~t~~~l~~~~~~LkpgG~lv~~~ 222 (314)
T 2b2c_A 178 HKNEFDVIITDS-SDPVGPAESLFGQSYYELLRDALKEDGILSSQG 222 (314)
T ss_dssp CTTCEEEEEECC-C-------------HHHHHHHHEEEEEEEEEEC
T ss_pred cCCCceEEEEcC-CCCCCcchhhhHHHHHHHHHhhcCCCeEEEEEC
Confidence 457899999844 34443222 1 45667899999999 555544
No 229
>1inl_A Spermidine synthase; beta-barrel, rossman fold, structural genomics, PSI, protein structure initiative; 1.50A {Thermotoga maritima} SCOP: c.66.1.17 PDB: 1jq3_A*
Probab=98.78 E-value=2.6e-08 Score=106.45 Aligned_cols=112 Identities=13% Similarity=0.164 Sum_probs=78.3
Q ss_pred CCCCEEEEEcCccchHHHHHhcCCCCCceEEEEeCChHHHHHHHHHHhhhhhcccccCCCCCCCccEEEEEcCcccc-CC
Q 002218 712 SCATTLVDFGCGSGSLLDSLLDYPTALEKIVGVDISQKSLSRAAKIIHSKLSKKLDAAVPCTDVKSAVLFDGSITVF-DS 790 (952)
Q Consensus 712 ~k~krVLDIGCGeG~ll~~LAr~g~~~~qVVGVDISeemLe~ArkrLsa~la~~~~~l~Pr~~~~nVtf~qGDa~dL-pf 790 (952)
..+.+|||||||+|.++..+++.. +..+|++||+|+.+++.|++++...... ...++++++++|+.+. +.
T Consensus 89 ~~~~~VLdiG~G~G~~~~~l~~~~-~~~~v~~vDid~~~~~~a~~~~~~~~~~--------~~~~~v~~~~~D~~~~l~~ 159 (296)
T 1inl_A 89 PNPKKVLIIGGGDGGTLREVLKHD-SVEKAILCEVDGLVIEAARKYLKQTSCG--------FDDPRAEIVIANGAEYVRK 159 (296)
T ss_dssp SSCCEEEEEECTTCHHHHHHTTST-TCSEEEEEESCHHHHHHHHHHCHHHHGG--------GGCTTEEEEESCHHHHGGG
T ss_pred CCCCEEEEEcCCcCHHHHHHHhcC-CCCEEEEEECCHHHHHHHHHHhHhhccc--------cCCCceEEEECcHHHHHhh
Confidence 356899999999999999999874 3479999999999999999876421000 1135899999998763 33
Q ss_pred CCCCccEEEEcccccc-CChh---HHHHHHHHHHHccCCC-EEEEEec
Q 002218 791 RLHGFDIGTCLEVIEH-MEED---EASQFGNIVLSSFRPR-ILIVSTP 833 (952)
Q Consensus 791 ~d~sFDVVVcieVIEH-L~dD---~l~~L~eeI~RvLKPG-~LIISTP 833 (952)
..+.||+|++.- ..+ +... ....+.+.+.++|+|| .+++.+.
T Consensus 160 ~~~~fD~Ii~d~-~~~~~~~~~~l~~~~~l~~~~~~LkpgG~lv~~~~ 206 (296)
T 1inl_A 160 FKNEFDVIIIDS-TDPTAGQGGHLFTEEFYQACYDALKEDGVFSAETE 206 (296)
T ss_dssp CSSCEEEEEEEC-----------CCSHHHHHHHHHHEEEEEEEEEECC
T ss_pred CCCCceEEEEcC-CCcccCchhhhhHHHHHHHHHHhcCCCcEEEEEcc
Confidence 457899999742 222 2211 0135556799999999 6666543
No 230
>2frx_A Hypothetical protein YEBU; rossmann-type S-adenosylmethionine-dependent methyltransfera domain; 2.90A {Escherichia coli}
Probab=98.78 E-value=1.4e-08 Score=116.03 Aligned_cols=119 Identities=14% Similarity=0.145 Sum_probs=88.0
Q ss_pred HHHHHhhcC--CCCEEEEEcCccchHHHHHhcCCCCCceEEEEeCChHHHHHHHHHHhhhhhcccccCCCCCCCccEEEE
Q 002218 704 YALQHIKES--CATTLVDFGCGSGSLLDSLLDYPTALEKIVGVDISQKSLSRAAKIIHSKLSKKLDAAVPCTDVKSAVLF 781 (952)
Q Consensus 704 fVldlL~~~--k~krVLDIGCGeG~ll~~LAr~g~~~~qVVGVDISeemLe~ArkrLsa~la~~~~~l~Pr~~~~nVtf~ 781 (952)
++...+... ++.+|||+|||+|..+..|++..+...+|+|+|+++.+++.+++++.. .+..++.+.
T Consensus 106 l~~~~L~~~~~~g~~VLDl~aGpG~kt~~lA~~~~~~g~V~avDis~~~l~~~~~n~~r------------~g~~nv~~~ 173 (479)
T 2frx_A 106 LPVAALFADGNAPQRVMDVAAAPGSKTTQISARMNNEGAILANEFSASRVKVLHANISR------------CGISNVALT 173 (479)
T ss_dssp HHHHHHTTTTCCCSEEEESSCTTSHHHHHHHHHTTTCSEEEEECSSHHHHHHHHHHHHH------------HTCCSEEEE
T ss_pred HHHHHhCcccCCCCEEEEeCCCCCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHH------------cCCCcEEEE
Confidence 344555555 788999999999999999987532236899999999999999988753 234579999
Q ss_pred EcCccccCC-CCCCccEEEE------ccccccCCh-------h-------HHHHHHHHHHHccCCC-EEEEEecC
Q 002218 782 DGSITVFDS-RLHGFDIGTC------LEVIEHMEE-------D-------EASQFGNIVLSSFRPR-ILIVSTPN 834 (952)
Q Consensus 782 qGDa~dLpf-~d~sFDVVVc------ieVIEHL~d-------D-------~l~~L~eeI~RvLKPG-~LIISTPN 834 (952)
++|+.+++. ..+.||+|++ .+++.+.++ + ....+.+++.++|||| .++++|..
T Consensus 174 ~~D~~~~~~~~~~~fD~Il~D~PcSg~G~~~~~pd~~~~~~~~~~~~l~~~q~~iL~~a~~~LkpGG~LvysTcs 248 (479)
T 2frx_A 174 HFDGRVFGAAVPEMFDAILLDAPCSGEGVVRKDPDALKNWSPESNQEIAATQRELIDSAFHALRPGGTLVYSTCT 248 (479)
T ss_dssp CCCSTTHHHHSTTCEEEEEEECCCCCGGGGGTCTTSSSSCCHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEEESC
T ss_pred eCCHHHhhhhccccCCEEEECCCcCCcccccCCHHHHhhcCHhHHHHHHHHHHHHHHHHHHhcCCCCEEEEeccc
Confidence 999988764 4568999997 234444331 1 1234556799999998 77777653
No 231
>1wxx_A TT1595, hypothetical protein TTHA1280; thermus thermophillus, methyltransferase, adoMet, structural genomics; 1.80A {Thermus thermophilus} SCOP: b.122.1.9 c.66.1.51 PDB: 1wxw_A 2cww_A*
Probab=98.77 E-value=3.6e-08 Score=108.62 Aligned_cols=106 Identities=15% Similarity=0.095 Sum_probs=79.1
Q ss_pred CCCEEEEEcCccchHHHHHhcCCCCCceEEEEeCChHHHHHHHHHHhhhhhcccccCCCCCCCccEEEEEcCccccCCC-
Q 002218 713 CATTLVDFGCGSGSLLDSLLDYPTALEKIVGVDISQKSLSRAAKIIHSKLSKKLDAAVPCTDVKSAVLFDGSITVFDSR- 791 (952)
Q Consensus 713 k~krVLDIGCGeG~ll~~LAr~g~~~~qVVGVDISeemLe~ArkrLsa~la~~~~~l~Pr~~~~nVtf~qGDa~dLpf~- 791 (952)
++.+|||+|||+|.++..+++.. .+|+|+|+|+.+++.|++++.. .+..+++++++|+.+....
T Consensus 209 ~~~~VLDlg~G~G~~~~~la~~~---~~v~~vD~s~~~~~~a~~n~~~------------n~~~~~~~~~~d~~~~~~~~ 273 (382)
T 1wxx_A 209 RGERALDVFSYAGGFALHLALGF---REVVAVDSSAEALRRAEENARL------------NGLGNVRVLEANAFDLLRRL 273 (382)
T ss_dssp CEEEEEEETCTTTHHHHHHHHHE---EEEEEEESCHHHHHHHHHHHHH------------TTCTTEEEEESCHHHHHHHH
T ss_pred CCCeEEEeeeccCHHHHHHHHhC---CEEEEEECCHHHHHHHHHHHHH------------cCCCCceEEECCHHHHHHHH
Confidence 66799999999999999999874 7999999999999999987652 2344699999999875432
Q ss_pred ---CCCccEEEEccc--------cccCChhHHHHHHHHHHHccCCC-EEEEEecC
Q 002218 792 ---LHGFDIGTCLEV--------IEHMEEDEASQFGNIVLSSFRPR-ILIVSTPN 834 (952)
Q Consensus 792 ---d~sFDVVVcieV--------IEHL~dD~l~~L~eeI~RvLKPG-~LIISTPN 834 (952)
...||+|++.-- +.... .....+...+.++|+|| .+++++..
T Consensus 274 ~~~~~~fD~Ii~dpP~~~~~~~~~~~~~-~~~~~~l~~~~~~LkpgG~l~~~~~~ 327 (382)
T 1wxx_A 274 EKEGERFDLVVLDPPAFAKGKKDVERAY-RAYKEVNLRAIKLLKEGGILATASCS 327 (382)
T ss_dssp HHTTCCEEEEEECCCCSCCSTTSHHHHH-HHHHHHHHHHHHTEEEEEEEEEEECC
T ss_pred HhcCCCeeEEEECCCCCCCChhHHHHHH-HHHHHHHHHHHHhcCCCCEEEEEECC
Confidence 568999998321 11111 22344556799999999 66666543
No 232
>1mjf_A Spermidine synthase; spermidine synthetase, structural genomics, PSI, protein structure initiative; 1.80A {Pyrococcus furiosus} SCOP: c.66.1.17 PDB: 2e5w_A* 2zsu_A*
Probab=98.76 E-value=2e-08 Score=106.32 Aligned_cols=116 Identities=16% Similarity=0.195 Sum_probs=77.9
Q ss_pred CCCCEEEEEcCccchHHHHHhcCCCCCceEEEEeCChHHHHHHHHHHhhhhhcccccCCCCCCCccEEEEEcCccccCCC
Q 002218 712 SCATTLVDFGCGSGSLLDSLLDYPTALEKIVGVDISQKSLSRAAKIIHSKLSKKLDAAVPCTDVKSAVLFDGSITVFDSR 791 (952)
Q Consensus 712 ~k~krVLDIGCGeG~ll~~LAr~g~~~~qVVGVDISeemLe~ArkrLsa~la~~~~~l~Pr~~~~nVtf~qGDa~dLpf~ 791 (952)
..+++|||||||+|.++..+++.+ ..+|++||+++.+++.|++++ ...... .........++++++.+|+.+....
T Consensus 74 ~~~~~VLdiG~G~G~~~~~l~~~~--~~~v~~vDid~~~i~~ar~~~-~~~~~l-~~~~~~~~~~~v~~~~~D~~~~l~~ 149 (281)
T 1mjf_A 74 PKPKRVLVIGGGDGGTVREVLQHD--VDEVIMVEIDEDVIMVSKDLI-KIDNGL-LEAMLNGKHEKAKLTIGDGFEFIKN 149 (281)
T ss_dssp SCCCEEEEEECTTSHHHHHHTTSC--CSEEEEEESCHHHHHHHHHHT-CTTTTH-HHHHHTTCCSSEEEEESCHHHHHHH
T ss_pred CCCCeEEEEcCCcCHHHHHHHhCC--CCEEEEEECCHHHHHHHHHHH-hhcccc-ccccccCCCCcEEEEECchHHHhcc
Confidence 467899999999999999999873 379999999999999998875 210000 0000000235799999998763211
Q ss_pred CCCccEEEEccccccCCh-hH--HHHHHHHHHHccCCC-EEEEEe
Q 002218 792 LHGFDIGTCLEVIEHMEE-DE--ASQFGNIVLSSFRPR-ILIVST 832 (952)
Q Consensus 792 d~sFDVVVcieVIEHL~d-D~--l~~L~eeI~RvLKPG-~LIIST 832 (952)
.+.||+|++... .|..+ .. ...+.+.+.++|+|| .+++.+
T Consensus 150 ~~~fD~Ii~d~~-~~~~~~~~l~~~~~l~~~~~~L~pgG~lv~~~ 193 (281)
T 1mjf_A 150 NRGFDVIIADST-DPVGPAKVLFSEEFYRYVYDALNNPGIYVTQA 193 (281)
T ss_dssp CCCEEEEEEECC-CCC-----TTSHHHHHHHHHHEEEEEEEEEEE
T ss_pred cCCeeEEEECCC-CCCCcchhhhHHHHHHHHHHhcCCCcEEEEEc
Confidence 578999998543 23321 11 145566799999999 555554
No 233
>2qm3_A Predicted methyltransferase; putative methyltransferase, structural genomics, pyrococcus PSI-2, protein structure initiative; HET: MSE; 2.05A {Pyrococcus furiosus dsm 3638}
Probab=98.71 E-value=8.1e-08 Score=105.48 Aligned_cols=106 Identities=11% Similarity=0.035 Sum_probs=81.2
Q ss_pred CCCCEEEEEcCccchHHHHHhcCCCCCceEEEEeCChHHHHHHHHHHhhhhhcccccCCCCCCCccEEEEEcCccc-cCC
Q 002218 712 SCATTLVDFGCGSGSLLDSLLDYPTALEKIVGVDISQKSLSRAAKIIHSKLSKKLDAAVPCTDVKSAVLFDGSITV-FDS 790 (952)
Q Consensus 712 ~k~krVLDIGCGeG~ll~~LAr~g~~~~qVVGVDISeemLe~ArkrLsa~la~~~~~l~Pr~~~~nVtf~qGDa~d-Lpf 790 (952)
.++.+|||+| |+|.++..+++.+ +..+|+|+|+|+.|++.|++++... +..+++++++|+.+ ++.
T Consensus 171 ~~~~~VLDlG-G~G~~~~~la~~~-~~~~v~~vDi~~~~l~~a~~~~~~~------------g~~~v~~~~~D~~~~l~~ 236 (373)
T 2qm3_A 171 LENKDIFVLG-DDDLTSIALMLSG-LPKRIAVLDIDERLTKFIEKAANEI------------GYEDIEIFTFDLRKPLPD 236 (373)
T ss_dssp STTCEEEEES-CTTCHHHHHHHHT-CCSEEEEECSCHHHHHHHHHHHHHH------------TCCCEEEECCCTTSCCCT
T ss_pred CCCCEEEEEC-CCCHHHHHHHHhC-CCCEEEEEECCHHHHHHHHHHHHHc------------CCCCEEEEEChhhhhchh
Confidence 3578999999 9999999998875 3369999999999999999886531 22379999999988 654
Q ss_pred -CCCCccEEEEccccccCChhHHHHHHHHHHHccCCC--EEEEEecC
Q 002218 791 -RLHGFDIGTCLEVIEHMEEDEASQFGNIVLSSFRPR--ILIVSTPN 834 (952)
Q Consensus 791 -~d~sFDVVVcieVIEHL~dD~l~~L~eeI~RvLKPG--~LIISTPN 834 (952)
..++||+|++.-.+.+.. ...+.+.+.++|||| .+++++-.
T Consensus 237 ~~~~~fD~Vi~~~p~~~~~---~~~~l~~~~~~LkpgG~~~~~~~~~ 280 (373)
T 2qm3_A 237 YALHKFDTFITDPPETLEA---IRAFVGRGIATLKGPRCAGYFGITR 280 (373)
T ss_dssp TTSSCBSEEEECCCSSHHH---HHHHHHHHHHTBCSTTCEEEEEECT
T ss_pred hccCCccEEEECCCCchHH---HHHHHHHHHHHcccCCeEEEEEEec
Confidence 356899999976543321 356667899999996 34666544
No 234
>3gru_A Dimethyladenosine transferase; rossman fold, ribosomal assem adenosyl-L-methionine, rRNA, methyltransferase, RNA-binding processing; HET: AMP; 1.60A {Methanocaldococcus jannaschii} PDB: 3grr_A* 3grv_A* 3gry_A* 3fyd_A 3fyc_A*
Probab=98.70 E-value=3.3e-08 Score=106.73 Aligned_cols=84 Identities=17% Similarity=0.183 Sum_probs=71.4
Q ss_pred HHHHHHHhhcCCCCEEEEEcCccchHHHHHhcCCCCCceEEEEeCChHHHHHHHHHHhhhhhcccccCCCCCCCccEEEE
Q 002218 702 VEYALQHIKESCATTLVDFGCGSGSLLDSLLDYPTALEKIVGVDISQKSLSRAAKIIHSKLSKKLDAAVPCTDVKSAVLF 781 (952)
Q Consensus 702 ~efVldlL~~~k~krVLDIGCGeG~ll~~LAr~g~~~~qVVGVDISeemLe~ArkrLsa~la~~~~~l~Pr~~~~nVtf~ 781 (952)
.+.+++.+...++.+|||||||+|.++..|++.+ .+|+|||+|+.+++.+++++.. ..+++++
T Consensus 39 ~~~Iv~~l~~~~~~~VLEIG~G~G~lT~~La~~~---~~V~aVEid~~li~~a~~~~~~--------------~~~v~vi 101 (295)
T 3gru_A 39 VNKAVESANLTKDDVVLEIGLGKGILTEELAKNA---KKVYVIEIDKSLEPYANKLKEL--------------YNNIEII 101 (295)
T ss_dssp HHHHHHHTTCCTTCEEEEECCTTSHHHHHHHHHS---SEEEEEESCGGGHHHHHHHHHH--------------CSSEEEE
T ss_pred HHHHHHhcCCCCcCEEEEECCCchHHHHHHHhcC---CEEEEEECCHHHHHHHHHHhcc--------------CCCeEEE
Confidence 4456666666778899999999999999999886 7999999999999999887641 2479999
Q ss_pred EcCccccCCCCCCccEEEEcc
Q 002218 782 DGSITVFDSRLHGFDIGTCLE 802 (952)
Q Consensus 782 qGDa~dLpf~d~sFDVVVcie 802 (952)
++|+.++++....||+|++.-
T Consensus 102 ~gD~l~~~~~~~~fD~Iv~Nl 122 (295)
T 3gru_A 102 WGDALKVDLNKLDFNKVVANL 122 (295)
T ss_dssp ESCTTTSCGGGSCCSEEEEEC
T ss_pred ECchhhCCcccCCccEEEEeC
Confidence 999999888777899999763
No 235
>3m6w_A RRNA methylase; rRNA methyltransferase, 5-methylcytidine, RSMF, adoMet, MULT specific, methyltransferase, transferase; HET: CXM SAM; 1.30A {Thermus thermophilus} PDB: 3m6v_A* 3m6u_A* 3m6x_A*
Probab=98.69 E-value=2e-08 Score=114.72 Aligned_cols=118 Identities=8% Similarity=0.004 Sum_probs=87.0
Q ss_pred HHHHHhhcCCCCEEEEEcCccchHHHHHhcCCCCCceEEEEeCChHHHHHHHHHHhhhhhcccccCCCCCCCccEEEEEc
Q 002218 704 YALQHIKESCATTLVDFGCGSGSLLDSLLDYPTALEKIVGVDISQKSLSRAAKIIHSKLSKKLDAAVPCTDVKSAVLFDG 783 (952)
Q Consensus 704 fVldlL~~~k~krVLDIGCGeG~ll~~LAr~g~~~~qVVGVDISeemLe~ArkrLsa~la~~~~~l~Pr~~~~nVtf~qG 783 (952)
++...+...++.+|||+|||+|..+..|++..+...+|+|+|+|+.+++.+++++.. .+.. +.+.++
T Consensus 92 l~a~~L~~~~g~~VLDlgaGpG~kt~~LA~~~~~~g~V~AvDis~~~l~~a~~n~~r------------~G~~-v~~~~~ 158 (464)
T 3m6w_A 92 AVGVLLDPKPGERVLDLAAAPGGKTTHLAARMGGKGLLLANEVDGKRVRGLLENVER------------WGAP-LAVTQA 158 (464)
T ss_dssp HHHHHHCCCTTCEEEESSCTTCHHHHHHHHHTTTCSEEEEECSCHHHHHHHHHHHHH------------HCCC-CEEECS
T ss_pred HHHHhcCcCCCCEEEEEcCCcCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHH------------cCCe-EEEEEC
Confidence 445556666789999999999999999986542236899999999999999988753 2344 899999
Q ss_pred CccccCC-CCCCccEEEE------ccccccCChh--------------HHHHHHHHHHHccCCC-EEEEEecC
Q 002218 784 SITVFDS-RLHGFDIGTC------LEVIEHMEED--------------EASQFGNIVLSSFRPR-ILIVSTPN 834 (952)
Q Consensus 784 Da~dLpf-~d~sFDVVVc------ieVIEHL~dD--------------~l~~L~eeI~RvLKPG-~LIISTPN 834 (952)
|+.+++. ..+.||+|++ .+++.+-++. ....+.+.+.++|||| .++.+|..
T Consensus 159 Da~~l~~~~~~~FD~Il~D~PcSg~G~~rr~pd~~~~~~~~~~~~l~~~Q~~iL~~a~~~LkpGG~LvysTCs 231 (464)
T 3m6w_A 159 PPRALAEAFGTYFHRVLLDAPCSGEGMFRKDREAARHWGPSAPKRMAEVQKALLAQASRLLGPGGVLVYSTCT 231 (464)
T ss_dssp CHHHHHHHHCSCEEEEEEECCCCCGGGTTTCTTSGGGCCTTHHHHHHHHHHHHHHHHHTTEEEEEEEEEEESC
T ss_pred CHHHhhhhccccCCEEEECCCcCCccccccChHHhhhcCHHHHHHHHHHHHHHHHHHHHhcCCCcEEEEEecc
Confidence 9988762 4678999995 2344333311 1245566799999998 77776653
No 236
>1sqg_A SUN protein, FMU protein; rossmann-fold, mixed beta sheet, methyltransferase-fold, RNA-binding domain; 1.65A {Escherichia coli} SCOP: a.79.1.3 c.66.1.38 PDB: 1sqf_A
Probab=98.69 E-value=4.2e-08 Score=109.75 Aligned_cols=117 Identities=16% Similarity=0.193 Sum_probs=88.5
Q ss_pred HHHHHhhcCCCCEEEEEcCccchHHHHHhcCCCCCceEEEEeCChHHHHHHHHHHhhhhhcccccCCCCCCCccEEEEEc
Q 002218 704 YALQHIKESCATTLVDFGCGSGSLLDSLLDYPTALEKIVGVDISQKSLSRAAKIIHSKLSKKLDAAVPCTDVKSAVLFDG 783 (952)
Q Consensus 704 fVldlL~~~k~krVLDIGCGeG~ll~~LAr~g~~~~qVVGVDISeemLe~ArkrLsa~la~~~~~l~Pr~~~~nVtf~qG 783 (952)
.+...+...++.+|||+|||+|..+..+++..+ ..+|+|+|+++.+++.+++++.. .+. ++++.++
T Consensus 237 ~~~~~l~~~~g~~VLDlgaG~G~~t~~la~~~~-~~~v~a~D~~~~~l~~~~~~~~~------------~g~-~~~~~~~ 302 (429)
T 1sqg_A 237 GCMTWLAPQNGEHILDLCAAPGGKTTHILEVAP-EAQVVAVDIDEQRLSRVYDNLKR------------LGM-KATVKQG 302 (429)
T ss_dssp THHHHHCCCTTCEEEEESCTTCHHHHHHHHHCT-TCEEEEEESSTTTHHHHHHHHHH------------TTC-CCEEEEC
T ss_pred HHHHHcCCCCcCeEEEECCCchHHHHHHHHHcC-CCEEEEECCCHHHHHHHHHHHHH------------cCC-CeEEEeC
Confidence 445556666788999999999999999998762 37999999999999999987652 122 5789999
Q ss_pred CccccC--CCCCCccEEEE------ccccccCChh--------------HHHHHHHHHHHccCCC-EEEEEecC
Q 002218 784 SITVFD--SRLHGFDIGTC------LEVIEHMEED--------------EASQFGNIVLSSFRPR-ILIVSTPN 834 (952)
Q Consensus 784 Da~dLp--f~d~sFDVVVc------ieVIEHL~dD--------------~l~~L~eeI~RvLKPG-~LIISTPN 834 (952)
|+.+++ +..+.||+|++ .+++.|.++. ....+.+.+.++|||| .++++|..
T Consensus 303 D~~~~~~~~~~~~fD~Vl~D~Pcsg~g~~~~~p~~~~~~~~~~~~~l~~~q~~~L~~a~~~LkpGG~lvystcs 376 (429)
T 1sqg_A 303 DGRYPSQWCGEQQFDRILLDAPCSATGVIRRHPDIKWLRRDRDIPELAQLQSEILDAIWPHLKTGGTLVYATCS 376 (429)
T ss_dssp CTTCTHHHHTTCCEEEEEEECCCCCGGGTTTCTTHHHHCCTTHHHHHHHHHHHHHHHHGGGEEEEEEEEEEESC
T ss_pred chhhchhhcccCCCCEEEEeCCCCcccccCCCcchhhcCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEECC
Confidence 998876 34578999995 3466665531 1135566799999998 77777753
No 237
>2wa2_A Non-structural protein 5; transferase, S-adenosyl-L- methionine, virion, membrane, flavivirus, N7-methyltransferase, 2'-O-methyltransferase; HET: SAM; 1.80A {Modoc virus} PDB: 2wa1_A*
Probab=98.69 E-value=1.4e-08 Score=108.23 Aligned_cols=105 Identities=17% Similarity=0.089 Sum_probs=71.5
Q ss_pred CCCCEEEEEcCccchHHHHHhcCCCCCceEEEEeCChHHHHHHHHHHhhhhhcccccCCCCCCCccEEEE--EcCccccC
Q 002218 712 SCATTLVDFGCGSGSLLDSLLDYPTALEKIVGVDISQKSLSRAAKIIHSKLSKKLDAAVPCTDVKSAVLF--DGSITVFD 789 (952)
Q Consensus 712 ~k~krVLDIGCGeG~ll~~LAr~g~~~~qVVGVDISeemLe~ArkrLsa~la~~~~~l~Pr~~~~nVtf~--qGDa~dLp 789 (952)
.++.+|||||||+|.++..+++. .+|+|||+++ |+..++++. . .......++.++ ++|+.+++
T Consensus 81 ~~g~~VLDlGcGtG~~s~~la~~----~~V~gVD~s~-m~~~a~~~~---~-------~~~~~~~~v~~~~~~~D~~~l~ 145 (276)
T 2wa2_A 81 ELKGTVVDLGCGRGSWSYYAASQ----PNVREVKAYT-LGTSGHEKP---R-------LVETFGWNLITFKSKVDVTKME 145 (276)
T ss_dssp CCCEEEEEESCTTCHHHHHHHTS----TTEEEEEEEC-CCCTTSCCC---C-------CCCCTTGGGEEEECSCCGGGCC
T ss_pred CCCCEEEEeccCCCHHHHHHHHc----CCEEEEECch-hhhhhhhch---h-------hhhhcCCCeEEEeccCcHhhCC
Confidence 35679999999999999999987 3799999998 543332110 0 000111278999 99998876
Q ss_pred CCCCCccEEEEccccccCChh---HHH--HHHHHHHHccCCCE---EEEEecC
Q 002218 790 SRLHGFDIGTCLEVIEHMEED---EAS--QFGNIVLSSFRPRI---LIVSTPN 834 (952)
Q Consensus 790 f~d~sFDVVVcieVIEHL~dD---~l~--~L~eeI~RvLKPG~---LIISTPN 834 (952)
+..||+|+|..+ ++.... ... .+.+++.++||||. +++.+..
T Consensus 146 --~~~fD~Vvsd~~-~~~~~~~~d~~~~l~~L~~~~r~LkpGG~~~~v~~~~~ 195 (276)
T 2wa2_A 146 --PFQADTVLCDIG-ESNPTAAVEASRTLTVLNVISRWLEYNQGCGFCVKVLN 195 (276)
T ss_dssp --CCCCSEEEECCC-CCCSCHHHHHHHHHHHHHHHHHHHHHSTTCEEEEEESC
T ss_pred --CCCcCEEEECCC-cCCCchhhhHHHHHHHHHHHHHHhccCCCcEEEEEeCC
Confidence 578999999877 444321 111 13467899999975 6665554
No 238
>2nyu_A Putative ribosomal RNA methyltransferase 2; SAM, structural genomics, structural genomics consortium, SGC; HET: SAM; 1.76A {Homo sapiens}
Probab=98.68 E-value=9.5e-08 Score=93.15 Aligned_cols=101 Identities=12% Similarity=0.080 Sum_probs=70.9
Q ss_pred CCCCEEEEEcCccchHHHHHhcCCCCC--------ceEEEEeCChHHHHHHHHHHhhhhhcccccCCCCCCCccEEEE-E
Q 002218 712 SCATTLVDFGCGSGSLLDSLLDYPTAL--------EKIVGVDISQKSLSRAAKIIHSKLSKKLDAAVPCTDVKSAVLF-D 782 (952)
Q Consensus 712 ~k~krVLDIGCGeG~ll~~LAr~g~~~--------~qVVGVDISeemLe~ArkrLsa~la~~~~~l~Pr~~~~nVtf~-q 782 (952)
.++.+|||+|||+|.++..+++..+.. .+|+|+|+|+.+ ...++++. +
T Consensus 21 ~~~~~vLDlGcG~G~~~~~la~~~~~~~~~~~~~~~~v~~vD~s~~~-----------------------~~~~~~~~~~ 77 (196)
T 2nyu_A 21 RPGLRVLDCGAAPGAWSQVAVQKVNAAGTDPSSPVGFVLGVDLLHIF-----------------------PLEGATFLCP 77 (196)
T ss_dssp CTTCEEEEETCCSCHHHHHHHHHTTTTCCCTTSCCCEEEEECSSCCC-----------------------CCTTCEEECS
T ss_pred CCCCEEEEeCCCCCHHHHHHHHHhccccccccCCCceEEEEechhcc-----------------------cCCCCeEEEe
Confidence 357899999999999999999874222 689999999831 01257888 8
Q ss_pred cCccccC--------CCCCCccEEEEcccccc----CChhH-----HHHHHHHHHHccCCC-EEEEEecCC
Q 002218 783 GSITVFD--------SRLHGFDIGTCLEVIEH----MEEDE-----ASQFGNIVLSSFRPR-ILIVSTPNY 835 (952)
Q Consensus 783 GDa~dLp--------f~d~sFDVVVcieVIEH----L~dD~-----l~~L~eeI~RvLKPG-~LIISTPN~ 835 (952)
+|+.+.+ +...+||+|+|...+++ ..+.. ...+.+++.++|||| .+++.+...
T Consensus 78 ~d~~~~~~~~~~~~~~~~~~fD~V~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~lv~~~~~~ 148 (196)
T 2nyu_A 78 ADVTDPRTSQRILEVLPGRRADVILSDMAPNATGFRDLDHDRLISLCLTLLSVTPDILQPGGTFLCKTWAG 148 (196)
T ss_dssp CCTTSHHHHHHHHHHSGGGCEEEEEECCCCCCCSCHHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEEECCS
T ss_pred ccCCCHHHHHHHHHhcCCCCCcEEEeCCCCCCCCCcccCHHHHHHHHHHHHHHHHHHhcCCCEEEEEecCC
Confidence 8887653 23468999999654443 22121 024556799999999 777776654
No 239
>2oxt_A Nucleoside-2'-O-methyltransferase; flavivirus, viral enzyme, RNA capping, S-adenosyl-L-methionine, viral protein; HET: SAM; 2.90A {Meaban virus}
Probab=98.66 E-value=1.9e-08 Score=106.57 Aligned_cols=117 Identities=12% Similarity=0.076 Sum_probs=75.9
Q ss_pred HHHHHHHHHhhcCCCCEEEEEcCccchHHHHHhcCCCCCceEEEEeCChHHHHHHHHHHhhhhhcccccCCCCCCCccEE
Q 002218 700 QRVEYALQHIKESCATTLVDFGCGSGSLLDSLLDYPTALEKIVGVDISQKSLSRAAKIIHSKLSKKLDAAVPCTDVKSAV 779 (952)
Q Consensus 700 QR~efVldlL~~~k~krVLDIGCGeG~ll~~LAr~g~~~~qVVGVDISeemLe~ArkrLsa~la~~~~~l~Pr~~~~nVt 779 (952)
.....+.+.....++.+|||||||+|.++..+++. .+|+|||+++ |+..+++. . . .......++.
T Consensus 61 ~KL~~i~~~~~~~~g~~VLDlGcGtG~~s~~la~~----~~V~gvD~s~-m~~~a~~~--~-~-------~~~~~~~~v~ 125 (265)
T 2oxt_A 61 AKLAWMEERGYVELTGRVVDLGCGRGGWSYYAASR----PHVMDVRAYT-LGVGGHEV--P-R-------ITESYGWNIV 125 (265)
T ss_dssp HHHHHHHHHTSCCCCEEEEEESCTTSHHHHHHHTS----TTEEEEEEEC-CCCSSCCC--C-C-------CCCBTTGGGE
T ss_pred HHHHHHHHcCCCCCCCEEEEeCcCCCHHHHHHHHc----CcEEEEECch-hhhhhhhh--h-h-------hhhccCCCeE
Confidence 33444444422345789999999999999999886 4799999998 54322110 0 0 0001112789
Q ss_pred EE--EcCccccCCCCCCccEEEEccccccCChh---HHH--HHHHHHHHccCCCE---EEEEecC
Q 002218 780 LF--DGSITVFDSRLHGFDIGTCLEVIEHMEED---EAS--QFGNIVLSSFRPRI---LIVSTPN 834 (952)
Q Consensus 780 f~--qGDa~dLpf~d~sFDVVVcieVIEHL~dD---~l~--~L~eeI~RvLKPG~---LIISTPN 834 (952)
++ ++|+.+++ +..||+|+|..+ ++.... ... .+.+.+.++||||. +++.+..
T Consensus 126 ~~~~~~D~~~l~--~~~fD~V~sd~~-~~~~~~~~d~~~~l~~L~~~~r~LkpGG~~~fv~kv~~ 187 (265)
T 2oxt_A 126 KFKSRVDIHTLP--VERTDVIMCDVG-ESSPKWSVESERTIKILELLEKWKVKNPSADFVVKVLC 187 (265)
T ss_dssp EEECSCCTTTSC--CCCCSEEEECCC-CCCSCHHHHHHHHHHHHHHHHHHHHHCTTCEEEEEESC
T ss_pred EEecccCHhHCC--CCCCcEEEEeCc-ccCCccchhHHHHHHHHHHHHHHhccCCCeEEEEEeCC
Confidence 99 99999876 578999999766 544321 111 13467889999974 6665654
No 240
>2yx1_A Hypothetical protein MJ0883; methyl transferase, tRNA modification enzyme, transferase; HET: SFG; 2.20A {Methanocaldococcus jannaschii} PDB: 2zzn_A* 3ay0_A* 2zzm_A*
Probab=98.66 E-value=1.1e-07 Score=103.17 Aligned_cols=118 Identities=17% Similarity=0.156 Sum_probs=85.0
Q ss_pred hcCCchhHHHHHHHHHHHhhcCCCCEEEEEcCccchHHHHHhcCCCCCceEEEEeCChHHHHHHHHHHhhhhhcccccCC
Q 002218 691 ALFSPPLSKQRVEYALQHIKESCATTLVDFGCGSGSLLDSLLDYPTALEKIVGVDISQKSLSRAAKIIHSKLSKKLDAAV 770 (952)
Q Consensus 691 ~~F~PPL~~QR~efVldlL~~~k~krVLDIGCGeG~ll~~LAr~g~~~~qVVGVDISeemLe~ArkrLsa~la~~~~~l~ 770 (952)
.+|.+.....|. .+.+.+ .++.+|||+|||+|.++.. ++.+ .+|+|+|+|+.+++.|++++...
T Consensus 176 ~~~~~~~~~er~-~i~~~~--~~~~~VLDlg~G~G~~~l~-a~~~---~~V~~vD~s~~ai~~a~~n~~~n--------- 239 (336)
T 2yx1_A 176 VYFSPRLGGERA-RIMKKV--SLNDVVVDMFAGVGPFSIA-CKNA---KKIYAIDINPHAIELLKKNIKLN--------- 239 (336)
T ss_dssp SCCCGGGHHHHH-HHHHHC--CTTCEEEETTCTTSHHHHH-TTTS---SEEEEEESCHHHHHHHHHHHHHT---------
T ss_pred hccCCccHHHHH-HHHHhc--CCCCEEEEccCccCHHHHh-ccCC---CEEEEEECCHHHHHHHHHHHHHc---------
Confidence 345555555565 344443 3678999999999999999 8733 79999999999999999886531
Q ss_pred CCCCCccEEEEEcCccccCCCCCCccEEEEccccccCChhHHHHHHHHHHHccCCC-EEEEEecCC
Q 002218 771 PCTDVKSAVLFDGSITVFDSRLHGFDIGTCLEVIEHMEEDEASQFGNIVLSSFRPR-ILIVSTPNY 835 (952)
Q Consensus 771 Pr~~~~nVtf~qGDa~dLpf~d~sFDVVVcieVIEHL~dD~l~~L~eeI~RvLKPG-~LIISTPN~ 835 (952)
+...+++++++|+.++. ..||+|++.-- .+ . ..+.+.+.++|+|| .+++.+...
T Consensus 240 --~l~~~v~~~~~D~~~~~---~~fD~Vi~dpP-~~-~----~~~l~~~~~~L~~gG~l~~~~~~~ 294 (336)
T 2yx1_A 240 --KLEHKIIPILSDVREVD---VKGNRVIMNLP-KF-A----HKFIDKALDIVEEGGVIHYYTIGK 294 (336)
T ss_dssp --TCTTTEEEEESCGGGCC---CCEEEEEECCT-TT-G----GGGHHHHHHHEEEEEEEEEEEEES
T ss_pred --CCCCcEEEEECChHHhc---CCCcEEEECCc-Hh-H----HHHHHHHHHHcCCCCEEEEEEeec
Confidence 11247999999998875 78999998421 11 1 14445689999998 666655543
No 241
>3k0b_A Predicted N6-adenine-specific DNA methylase; methylase,PF01170, putative RNA methylase, PSI,MCSG, structu genomics; 1.50A {Listeria monocytogenes str}
Probab=98.65 E-value=7.1e-08 Score=107.61 Aligned_cols=137 Identities=13% Similarity=0.095 Sum_probs=95.0
Q ss_pred CCchhHHHHHHHHHHHhhcCCCCEEEEEcCccchHHHHHhcCCCC-----------------------------------
Q 002218 693 FSPPLSKQRVEYALQHIKESCATTLVDFGCGSGSLLDSLLDYPTA----------------------------------- 737 (952)
Q Consensus 693 F~PPL~~QR~efVldlL~~~k~krVLDIGCGeG~ll~~LAr~g~~----------------------------------- 737 (952)
-.-|+.+.....++......++..|||.+||+|.++..++..+..
T Consensus 181 ~~Apl~e~lAa~ll~l~~~~~~~~vlDp~CGSGt~~ieaa~~~~~~apg~~R~f~f~~w~~~~~~~w~~~~~~a~~~~~~ 260 (393)
T 3k0b_A 181 GSAPIKETMAAALVLLTSWHPDRPFYDPVCGSGTIPIEAALIGQNIAPGFNREFVSETWDWMPKQVWADARQEAEDLANY 260 (393)
T ss_dssp CSCSCCHHHHHHHHHHSCCCTTSCEEETTCTTSHHHHHHHHHHTTCCTTTTSCCGGGGCTTSCHHHHHHHHHHHHHHCCT
T ss_pred CCCCCcHHHHHHHHHHhCCCCCCeEEEcCCCCCHHHHHHHHHhcCcCCCccccchhhccccCCHHHHHHHHHHHHHhhcc
Confidence 344677766667777766667789999999999999877654311
Q ss_pred --CceEEEEeCChHHHHHHHHHHhhhhhcccccCCCCCCCccEEEEEcCccccCCCCCCccEEEEcccc-ccCCh-hHHH
Q 002218 738 --LEKIVGVDISQKSLSRAAKIIHSKLSKKLDAAVPCTDVKSAVLFDGSITVFDSRLHGFDIGTCLEVI-EHMEE-DEAS 813 (952)
Q Consensus 738 --~~qVVGVDISeemLe~ArkrLsa~la~~~~~l~Pr~~~~nVtf~qGDa~dLpf~d~sFDVVVcieVI-EHL~d-D~l~ 813 (952)
..+|+|+|+|+.|++.|++++... +...++++.++|+.+++.. ..||+|++.--. +.+.+ +.+.
T Consensus 261 ~~~~~V~GvDid~~al~~Ar~Na~~~-----------gl~~~I~~~~~D~~~~~~~-~~fD~Iv~NPPYg~rl~~~~~l~ 328 (393)
T 3k0b_A 261 DQPLNIIGGDIDARLIEIAKQNAVEA-----------GLGDLITFRQLQVADFQTE-DEYGVVVANPPYGERLEDEEAVR 328 (393)
T ss_dssp TCCCCEEEEESCHHHHHHHHHHHHHT-----------TCTTCSEEEECCGGGCCCC-CCSCEEEECCCCCCSHHHHHHHH
T ss_pred cCCceEEEEECCHHHHHHHHHHHHHc-----------CCCCceEEEECChHhCCCC-CCCCEEEECCCCccccCCchhHH
Confidence 145999999999999999887531 1123599999999998764 489999997221 22321 3334
Q ss_pred HHHHHHHHccCC--C-EEEEEecCCchhHHH
Q 002218 814 QFGNIVLSSFRP--R-ILIVSTPNYEYNAIL 841 (952)
Q Consensus 814 ~L~eeI~RvLKP--G-~LIISTPN~efN~lf 841 (952)
.+...+.+.||+ | .+.+.|++.++...+
T Consensus 329 ~ly~~lg~~lk~~~g~~~~iit~~~~l~~~~ 359 (393)
T 3k0b_A 329 QLYREMGIVYKRMPTWSVYVLTSYELFEEVY 359 (393)
T ss_dssp HHHHHHHHHHHTCTTCEEEEEECCTTHHHHH
T ss_pred HHHHHHHHHHhcCCCCEEEEEECCHHHHHHh
Confidence 444456666665 6 777778887765443
No 242
>3ldg_A Putative uncharacterized protein SMU.472; YPSC, methyltransferase, transferase; HET: SAH; 1.96A {Streptococcus mutans}
Probab=98.64 E-value=1.4e-07 Score=105.16 Aligned_cols=135 Identities=14% Similarity=0.102 Sum_probs=95.5
Q ss_pred chhHHHHHHHHHHHhhcCCCCEEEEEcCccchHHHHHhcCCCC-------------------------------------
Q 002218 695 PPLSKQRVEYALQHIKESCATTLVDFGCGSGSLLDSLLDYPTA------------------------------------- 737 (952)
Q Consensus 695 PPL~~QR~efVldlL~~~k~krVLDIGCGeG~ll~~LAr~g~~------------------------------------- 737 (952)
-|+.+.....++......++..|||.+||+|.++...+..+..
T Consensus 176 Apl~e~LAaall~l~~~~~~~~llDp~CGSGt~lIEAa~~a~~iapg~~R~f~f~~w~~~~~~~w~~~~~~a~~~~~~~~ 255 (384)
T 3ldg_A 176 APIKENMAAAIILLSNWFPDKPFVDPTCGSGTFCIEAAMIGMNIAPGFNRDFAFEEWPWVDEALVTRVRNEADEQADYDI 255 (384)
T ss_dssp CCCCHHHHHHHHHHTTCCTTSCEEETTCTTSHHHHHHHHHHTTCCTTTTCCCGGGGCTTSCHHHHHHHHHHHHHHCCTTC
T ss_pred CCCcHHHHHHHHHHhCCCCCCeEEEeCCcCCHHHHHHHHHhcCcCCCccccchhhhhccCCHHHHHHHHHHHHHhhhccC
Confidence 3666666566666666667789999999999999877643311
Q ss_pred CceEEEEeCChHHHHHHHHHHhhhhhcccccCCCCCCCccEEEEEcCccccCCCCCCccEEEEcccc-ccCC-hhHHHHH
Q 002218 738 LEKIVGVDISQKSLSRAAKIIHSKLSKKLDAAVPCTDVKSAVLFDGSITVFDSRLHGFDIGTCLEVI-EHME-EDEASQF 815 (952)
Q Consensus 738 ~~qVVGVDISeemLe~ArkrLsa~la~~~~~l~Pr~~~~nVtf~qGDa~dLpf~d~sFDVVVcieVI-EHL~-dD~l~~L 815 (952)
..+|+|+|+++.|++.|++++... +....+++.++|+.+++.. ..||+|++.=-. +.+. .+.+..+
T Consensus 256 ~~~v~GvDid~~al~~Ar~Na~~~-----------gl~~~I~~~~~D~~~l~~~-~~fD~Iv~NPPYG~rl~~~~~l~~l 323 (384)
T 3ldg_A 256 QLDISGFDFDGRMVEIARKNAREV-----------GLEDVVKLKQMRLQDFKTN-KINGVLISNPPYGERLLDDKAVDIL 323 (384)
T ss_dssp CCCEEEEESCHHHHHHHHHHHHHT-----------TCTTTEEEEECCGGGCCCC-CCSCEEEECCCCTTTTSCHHHHHHH
T ss_pred CceEEEEECCHHHHHHHHHHHHHc-----------CCCCceEEEECChHHCCcc-CCcCEEEECCchhhccCCHHHHHHH
Confidence 145999999999999999887531 1123699999999998764 489999996221 2233 2344555
Q ss_pred HHHHHHccCC--C-EEEEEecCCchhHHH
Q 002218 816 GNIVLSSFRP--R-ILIVSTPNYEYNAIL 841 (952)
Q Consensus 816 ~eeI~RvLKP--G-~LIISTPN~efN~lf 841 (952)
...+.+.||+ | .+.+.|++.++...+
T Consensus 324 y~~lg~~lk~~~g~~~~iit~~~~l~~~~ 352 (384)
T 3ldg_A 324 YNEMGETFAPLKTWSQFILTNDTDFEQKF 352 (384)
T ss_dssp HHHHHHHHTTCTTSEEEEEESCTTHHHHH
T ss_pred HHHHHHHHhhCCCcEEEEEECCHHHHHHh
Confidence 5567777776 6 788888887765444
No 243
>2jjq_A Uncharacterized RNA methyltransferase pyrab10780; metal-binding, tRNA methyltransferase, S-adenosyl-L-methionine, iron, 4Fe-4S, iron-sulfur; HET: SAH; 1.8A {Pyrococcus abyssi} PDB: 2vs1_A*
Probab=98.64 E-value=2.2e-07 Score=104.70 Aligned_cols=107 Identities=17% Similarity=0.141 Sum_probs=77.5
Q ss_pred HHHHHHHHHhhcCCCCEEEEEcCccchHHHHHhcCCCCCceEEEEeCChHHHHHHHHHHhhhhhcccccCCCCCCCccEE
Q 002218 700 QRVEYALQHIKESCATTLVDFGCGSGSLLDSLLDYPTALEKIVGVDISQKSLSRAAKIIHSKLSKKLDAAVPCTDVKSAV 779 (952)
Q Consensus 700 QR~efVldlL~~~k~krVLDIGCGeG~ll~~LAr~g~~~~qVVGVDISeemLe~ArkrLsa~la~~~~~l~Pr~~~~nVt 779 (952)
..++.+.+ ..++.+|||+|||+|.++..|++.+ .+|+|+|+|+.+++.|++++.. .+.. ++
T Consensus 280 ~l~~~~~~---~~~~~~VLDlgcG~G~~sl~la~~~---~~V~gvD~s~~ai~~A~~n~~~------------ngl~-v~ 340 (425)
T 2jjq_A 280 NLVRKVSE---LVEGEKILDMYSGVGTFGIYLAKRG---FNVKGFDSNEFAIEMARRNVEI------------NNVD-AE 340 (425)
T ss_dssp HHHHHHHH---HCCSSEEEEETCTTTHHHHHHHHTT---CEEEEEESCHHHHHHHHHHHHH------------HTCC-EE
T ss_pred HHHHHhhc---cCCCCEEEEeeccchHHHHHHHHcC---CEEEEEECCHHHHHHHHHHHHH------------cCCc-EE
Confidence 33445554 3467899999999999999999986 7999999999999999987642 1333 99
Q ss_pred EEEcCccccCCCCCCccEEEEccccccCChhHHHHHHHHHHHccCCC-EEEEEe
Q 002218 780 LFDGSITVFDSRLHGFDIGTCLEVIEHMEEDEASQFGNIVLSSFRPR-ILIVST 832 (952)
Q Consensus 780 f~qGDa~dLpf~d~sFDVVVcieVIEHL~dD~l~~L~eeI~RvLKPG-~LIIST 832 (952)
++++|+.++... .||+|++.---..+. ..+.+.+ +.|+|+ .++++.
T Consensus 341 ~~~~d~~~~~~~--~fD~Vv~dPPr~g~~----~~~~~~l-~~l~p~givyvsc 387 (425)
T 2jjq_A 341 FEVASDREVSVK--GFDTVIVDPPRAGLH----PRLVKRL-NREKPGVIVYVSC 387 (425)
T ss_dssp EEECCTTTCCCT--TCSEEEECCCTTCSC----HHHHHHH-HHHCCSEEEEEES
T ss_pred EEECChHHcCcc--CCCEEEEcCCccchH----HHHHHHH-HhcCCCcEEEEEC
Confidence 999999887543 899999854322222 1233334 358999 555554
No 244
>2ih2_A Modification methylase TAQI; DNA, DNA methyltransferase, target base partner, 5-methylpyr 2(1H)-ONE, base flipping; HET: 5PY 6MA NEA; 1.61A {Thermus aquaticus} SCOP: c.66.1.27 d.287.1.1 PDB: 2ibs_A* 2ibt_A* 2ih4_A* 2ih5_A* 2jg3_A* 2np6_A* 2np7_A* 1aqj_A* 1aqi_A* 2adm_A* 1g38_A*
Probab=98.63 E-value=4.3e-08 Score=107.37 Aligned_cols=121 Identities=17% Similarity=0.285 Sum_probs=84.5
Q ss_pred hhcCCchhHHHHHHHHHHHhhcCCCCEEEEEcCccchHHHHHhcCCCCCceEEEEeCChHHHHHHHHHHhhhhhcccccC
Q 002218 690 QALFSPPLSKQRVEYALQHIKESCATTLVDFGCGSGSLLDSLLDYPTALEKIVGVDISQKSLSRAAKIIHSKLSKKLDAA 769 (952)
Q Consensus 690 ~~~F~PPL~~QR~efVldlL~~~k~krVLDIGCGeG~ll~~LAr~g~~~~qVVGVDISeemLe~ArkrLsa~la~~~~~l 769 (952)
..+|.|+.- .+++.+.+...++.+|||+|||+|.++..++++.....+++|+|+++.+++.|
T Consensus 19 g~~~TP~~l---~~~~~~~~~~~~~~~vLD~gcGtG~~~~~~~~~~~~~~~i~gvDi~~~~~~~a--------------- 80 (421)
T 2ih2_A 19 GRVETPPEV---VDFMVSLAEAPRGGRVLEPACAHGPFLRAFREAHGTAYRFVGVEIDPKALDLP--------------- 80 (421)
T ss_dssp --CCCCHHH---HHHHHHHCCCCTTCEEEEETCTTCHHHHHHHHHHCSCSEEEEEESCTTTCCCC---------------
T ss_pred ceEeCCHHH---HHHHHHhhccCCCCEEEECCCCChHHHHHHHHHhCCCCeEEEEECCHHHHHhC---------------
Confidence 345555332 34566666555567999999999999999987421127999999999988666
Q ss_pred CCCCCCccEEEEEcCccccCCCCCCccEEEEc---ccc-------ccCChhHHH-----------------HHHHHHHHc
Q 002218 770 VPCTDVKSAVLFDGSITVFDSRLHGFDIGTCL---EVI-------EHMEEDEAS-----------------QFGNIVLSS 822 (952)
Q Consensus 770 ~Pr~~~~nVtf~qGDa~dLpf~d~sFDVVVci---eVI-------EHL~dD~l~-----------------~L~eeI~Rv 822 (952)
.+++++++|+.+.+. ...||+|++. ... .|+.++... .|.+.+.++
T Consensus 81 ------~~~~~~~~D~~~~~~-~~~fD~Ii~NPPy~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fl~~~~~~ 153 (421)
T 2ih2_A 81 ------PWAEGILADFLLWEP-GEAFDLILGNPPYGIVGEASKYPIHVFKAVKDLYKKAFSTWKGKYNLYGAFLEKAVRL 153 (421)
T ss_dssp ------TTEEEEESCGGGCCC-SSCEEEEEECCCCCCBSCTTTCSBCCCHHHHHHHHHHCTTCCTTCCHHHHHHHHHHHH
T ss_pred ------CCCcEEeCChhhcCc-cCCCCEEEECcCccCcccccccccccCHHHHHHHHHhhhcccCCccHHHHHHHHHHHH
Confidence 168899999987653 4689999994 111 124333322 556779999
Q ss_pred cCCC-EEEEEecCC
Q 002218 823 FRPR-ILIVSTPNY 835 (952)
Q Consensus 823 LKPG-~LIISTPN~ 835 (952)
|+|| .+++.+|+.
T Consensus 154 Lk~~G~~~~i~p~~ 167 (421)
T 2ih2_A 154 LKPGGVLVFVVPAT 167 (421)
T ss_dssp EEEEEEEEEEEEGG
T ss_pred hCCCCEEEEEEChH
Confidence 9998 777888864
No 245
>1qam_A ERMC' methyltransferase; rRNA methyltransferase ERMC', cofactor analogs; 2.20A {Bacillus subtilis} SCOP: c.66.1.24 PDB: 1qan_A* 1qao_A* 1qaq_A* 2erc_A
Probab=98.63 E-value=1.4e-07 Score=98.07 Aligned_cols=78 Identities=13% Similarity=0.265 Sum_probs=63.4
Q ss_pred HHHHHHHhhcCCCCEEEEEcCccchHHHHHhcCCCCCceEEEEeCChHHHHHHHHHHhhhhhcccccCCCCCCCccEEEE
Q 002218 702 VEYALQHIKESCATTLVDFGCGSGSLLDSLLDYPTALEKIVGVDISQKSLSRAAKIIHSKLSKKLDAAVPCTDVKSAVLF 781 (952)
Q Consensus 702 ~efVldlL~~~k~krVLDIGCGeG~ll~~LAr~g~~~~qVVGVDISeemLe~ArkrLsa~la~~~~~l~Pr~~~~nVtf~ 781 (952)
.+.+.+.+...++.+|||||||+|.++..|++.+ .+|+|||+|+.+++.+++++. ...+++++
T Consensus 19 ~~~i~~~~~~~~~~~VLDiG~G~G~lt~~l~~~~---~~v~~vD~~~~~~~~a~~~~~--------------~~~~v~~~ 81 (244)
T 1qam_A 19 IDKIMTNIRLNEHDNIFEIGSGKGHFTLELVQRC---NFVTAIEIDHKLCKTTENKLV--------------DHDNFQVL 81 (244)
T ss_dssp HHHHHTTCCCCTTCEEEEECCTTSHHHHHHHHHS---SEEEEECSCHHHHHHHHHHTT--------------TCCSEEEE
T ss_pred HHHHHHhCCCCCCCEEEEEeCCchHHHHHHHHcC---CeEEEEECCHHHHHHHHHhhc--------------cCCCeEEE
Confidence 3456666666677899999999999999999887 799999999999999987642 12479999
Q ss_pred EcCccccCCCC-CCcc
Q 002218 782 DGSITVFDSRL-HGFD 796 (952)
Q Consensus 782 qGDa~dLpf~d-~sFD 796 (952)
++|+.++++.+ ..|+
T Consensus 82 ~~D~~~~~~~~~~~~~ 97 (244)
T 1qam_A 82 NKDILQFKFPKNQSYK 97 (244)
T ss_dssp CCCGGGCCCCSSCCCE
T ss_pred EChHHhCCcccCCCeE
Confidence 99999988764 3453
No 246
>4dmg_A Putative uncharacterized protein TTHA1493; rRNA, methyltransferase, S-adenosyl-methionine, 23S ribosoma transferase; HET: SAM; 1.70A {Thermus thermophilus}
Probab=98.62 E-value=2.4e-07 Score=103.50 Aligned_cols=105 Identities=10% Similarity=-0.053 Sum_probs=73.8
Q ss_pred CCCEEEEEcCccchHHHHHhcCCCCCceEEEEeCChHHHHHHHHHHhhhhhcccccCCCCCCCccEEEEEcCccccC-CC
Q 002218 713 CATTLVDFGCGSGSLLDSLLDYPTALEKIVGVDISQKSLSRAAKIIHSKLSKKLDAAVPCTDVKSAVLFDGSITVFD-SR 791 (952)
Q Consensus 713 k~krVLDIGCGeG~ll~~LAr~g~~~~qVVGVDISeemLe~ArkrLsa~la~~~~~l~Pr~~~~nVtf~qGDa~dLp-f~ 791 (952)
++.+|||+|||+|.++..+++.+ ..|+|+|+|+.+++.|++++... +. ..++.++|+.++. ..
T Consensus 214 ~g~~VLDlg~GtG~~sl~~a~~g---a~V~avDis~~al~~a~~n~~~n------------g~-~~~~~~~D~~~~l~~~ 277 (393)
T 4dmg_A 214 PGERVLDVYSYVGGFALRAARKG---AYALAVDKDLEALGVLDQAALRL------------GL-RVDIRHGEALPTLRGL 277 (393)
T ss_dssp TTCEEEEESCTTTHHHHHHHHTT---CEEEEEESCHHHHHHHHHHHHHH------------TC-CCEEEESCHHHHHHTC
T ss_pred CCCeEEEcccchhHHHHHHHHcC---CeEEEEECCHHHHHHHHHHHHHh------------CC-CCcEEEccHHHHHHHh
Confidence 47899999999999999999987 45999999999999999887532 11 2356689987753 21
Q ss_pred CCCccEEEEcccccc--------CChhHHHHHHHHHHHccCCC-EEEEEecC
Q 002218 792 LHGFDIGTCLEVIEH--------MEEDEASQFGNIVLSSFRPR-ILIVSTPN 834 (952)
Q Consensus 792 d~sFDVVVcieVIEH--------L~dD~l~~L~eeI~RvLKPG-~LIISTPN 834 (952)
.+.||+|++.---.+ .. .....+.+.+.++|+|| .+++.+.+
T Consensus 278 ~~~fD~Ii~dpP~f~~~~~~~~~~~-~~~~~ll~~a~~~LkpGG~Lv~~s~s 328 (393)
T 4dmg_A 278 EGPFHHVLLDPPTLVKRPEELPAMK-RHLVDLVREALRLLAEEGFLWLSSCS 328 (393)
T ss_dssp CCCEEEEEECCCCCCSSGGGHHHHH-HHHHHHHHHHHHTEEEEEEEEEEECC
T ss_pred cCCCCEEEECCCcCCCCHHHHHHHH-HHHHHHHHHHHHhcCCCCEEEEEECC
Confidence 334999998422101 11 12234556789999999 55545543
No 247
>2cmg_A Spermidine synthase; transferase, putrescine aminopropyltransferase, spermidine biosynthesis, polyamine biosynthesis, SPEE; 2.0A {Helicobacter pylori} PDB: 2cmh_A
Probab=98.61 E-value=7.2e-08 Score=101.82 Aligned_cols=100 Identities=13% Similarity=0.059 Sum_probs=75.3
Q ss_pred CCCCEEEEEcCccchHHHHHhcCCCCCceEEEEeCChHHHHHHHHHHhhhhhcccccCCCCCCCccEEEEEcCccccCCC
Q 002218 712 SCATTLVDFGCGSGSLLDSLLDYPTALEKIVGVDISQKSLSRAAKIIHSKLSKKLDAAVPCTDVKSAVLFDGSITVFDSR 791 (952)
Q Consensus 712 ~k~krVLDIGCGeG~ll~~LAr~g~~~~qVVGVDISeemLe~ArkrLsa~la~~~~~l~Pr~~~~nVtf~qGDa~dLpf~ 791 (952)
..+++|||||||+|.++..++++ + .+|++||+++.+++.|++++...... ...+++++..+|+.+..
T Consensus 71 ~~~~~VL~iG~G~G~~~~~ll~~-~--~~v~~veid~~~i~~ar~~~~~~~~~--------~~~~rv~~~~~D~~~~~-- 137 (262)
T 2cmg_A 71 KELKEVLIVDGFDLELAHQLFKY-D--THIDFVQADEKILDSFISFFPHFHEV--------KNNKNFTHAKQLLDLDI-- 137 (262)
T ss_dssp SCCCEEEEESSCCHHHHHHHTTS-S--CEEEEECSCHHHHGGGTTTSTTHHHH--------HTCTTEEEESSGGGSCC--
T ss_pred CCCCEEEEEeCCcCHHHHHHHhC-C--CEEEEEECCHHHHHHHHHHHHhhccc--------cCCCeEEEEechHHHHH--
Confidence 35689999999999999999987 3 79999999999999998754321000 01247999999998765
Q ss_pred CCCccEEEEccccccCChhHHHHHHHHHHHccCCC-EEEEEe
Q 002218 792 LHGFDIGTCLEVIEHMEEDEASQFGNIVLSSFRPR-ILIVST 832 (952)
Q Consensus 792 d~sFDVVVcieVIEHL~dD~l~~L~eeI~RvLKPG-~LIIST 832 (952)
+.||+|++. .. ++.. |.+.+.+.|+|| .+++.+
T Consensus 138 -~~fD~Ii~d-----~~-dp~~-~~~~~~~~L~pgG~lv~~~ 171 (262)
T 2cmg_A 138 -KKYDLIFCL-----QE-PDIH-RIDGLKRMLKEDGVFISVA 171 (262)
T ss_dssp -CCEEEEEES-----SC-CCHH-HHHHHHTTEEEEEEEEEEE
T ss_pred -hhCCEEEEC-----CC-ChHH-HHHHHHHhcCCCcEEEEEc
Confidence 789999985 22 2222 556899999999 555543
No 248
>3ldu_A Putative methylase; structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; HET: MSE GTP; 1.70A {Clostridium difficile}
Probab=98.61 E-value=1e-07 Score=106.00 Aligned_cols=135 Identities=21% Similarity=0.169 Sum_probs=96.4
Q ss_pred chhHHHHHHHHHHHhhcCCCCEEEEEcCccchHHHHHhcCCC-------------------------------------C
Q 002218 695 PPLSKQRVEYALQHIKESCATTLVDFGCGSGSLLDSLLDYPT-------------------------------------A 737 (952)
Q Consensus 695 PPL~~QR~efVldlL~~~k~krVLDIGCGeG~ll~~LAr~g~-------------------------------------~ 737 (952)
.|+.+.....++......++.+|||+|||+|.++..++..+. .
T Consensus 177 Apl~e~lAa~ll~~~~~~~~~~vlDp~CGSGt~lieaa~~~~~~apg~~R~f~f~~w~~~~~~~w~~~~~~a~~~~~~~~ 256 (385)
T 3ldu_A 177 APIRETLAAGLIYLTPWKAGRVLVDPMCGSGTILIEAAMIGINMAPGLNREFISEKWRTLDKKIWWDVRKDAFNKIDNES 256 (385)
T ss_dssp CCCCHHHHHHHHHTSCCCTTSCEEETTCTTCHHHHHHHHHHTTCCTTTTSCCGGGGCTTSCHHHHHHHHHHHHHHSCCSC
T ss_pred CCCcHHHHHHHHHhhCCCCCCeEEEcCCCCCHHHHHHHHHHhhhCCCcccccchhhcccCCHHHHHHHHHHHHHHhhccC
Confidence 366676666777777666788999999999999988765431 1
Q ss_pred CceEEEEeCChHHHHHHHHHHhhhhhcccccCCCCCCCccEEEEEcCccccCCCCCCccEEEEccc-cccCC-hhHHHHH
Q 002218 738 LEKIVGVDISQKSLSRAAKIIHSKLSKKLDAAVPCTDVKSAVLFDGSITVFDSRLHGFDIGTCLEV-IEHME-EDEASQF 815 (952)
Q Consensus 738 ~~qVVGVDISeemLe~ArkrLsa~la~~~~~l~Pr~~~~nVtf~qGDa~dLpf~d~sFDVVVcieV-IEHL~-dD~l~~L 815 (952)
..+|+|+|+++.+++.|++++... +....+++.++|+.+++.. ..||+|++.-- .+.+. .+.+..+
T Consensus 257 ~~~V~GvDid~~ai~~Ar~Na~~~-----------gl~~~i~~~~~D~~~l~~~-~~~D~Iv~NPPyg~rl~~~~~l~~l 324 (385)
T 3ldu_A 257 KFKIYGYDIDEESIDIARENAEIA-----------GVDEYIEFNVGDATQFKSE-DEFGFIITNPPYGERLEDKDSVKQL 324 (385)
T ss_dssp CCCEEEEESCHHHHHHHHHHHHHH-----------TCGGGEEEEECCGGGCCCS-CBSCEEEECCCCCCSHHHHHHHHHH
T ss_pred CceEEEEECCHHHHHHHHHHHHHc-----------CCCCceEEEECChhhcCcC-CCCcEEEECCCCcCccCCHHHHHHH
Confidence 147999999999999999887532 1123799999999998754 58999999543 23343 2334445
Q ss_pred HHHHHHccCC--C-EEEEEecCCchhHHH
Q 002218 816 GNIVLSSFRP--R-ILIVSTPNYEYNAIL 841 (952)
Q Consensus 816 ~eeI~RvLKP--G-~LIISTPN~efN~lf 841 (952)
.+.+.+.||+ | .+.+.|++.++...+
T Consensus 325 y~~lg~~lk~~~g~~~~iit~~~~l~~~~ 353 (385)
T 3ldu_A 325 YKELGYAFRKLKNWSYYLITSYEDFEYEF 353 (385)
T ss_dssp HHHHHHHHHTSBSCEEEEEESCTTHHHHH
T ss_pred HHHHHHHHhhCCCCEEEEEECCHHHHHhh
Confidence 5556667766 6 777778887765543
No 249
>3tqs_A Ribosomal RNA small subunit methyltransferase A; protein synthesis; 1.98A {Coxiella burnetii} SCOP: c.66.1.0
Probab=98.60 E-value=1.5e-07 Score=99.41 Aligned_cols=78 Identities=22% Similarity=0.303 Sum_probs=65.0
Q ss_pred HHHHHHHhhcCCCCEEEEEcCccchHHHHHhcCCCCCceEEEEeCChHHHHHHHHHHhhhhhcccccCCCCCCCccEEEE
Q 002218 702 VEYALQHIKESCATTLVDFGCGSGSLLDSLLDYPTALEKIVGVDISQKSLSRAAKIIHSKLSKKLDAAVPCTDVKSAVLF 781 (952)
Q Consensus 702 ~efVldlL~~~k~krVLDIGCGeG~ll~~LAr~g~~~~qVVGVDISeemLe~ArkrLsa~la~~~~~l~Pr~~~~nVtf~ 781 (952)
.+.+++.+...++.+|||||||+|.++..|++.+ .+|+|||+|+.|++.+++++.. ..+++++
T Consensus 18 ~~~iv~~~~~~~~~~VLEIG~G~G~lt~~La~~~---~~V~avEid~~~~~~~~~~~~~--------------~~~v~~i 80 (255)
T 3tqs_A 18 LQKIVSAIHPQKTDTLVEIGPGRGALTDYLLTEC---DNLALVEIDRDLVAFLQKKYNQ--------------QKNITIY 80 (255)
T ss_dssp HHHHHHHHCCCTTCEEEEECCTTTTTHHHHTTTS---SEEEEEECCHHHHHHHHHHHTT--------------CTTEEEE
T ss_pred HHHHHHhcCCCCcCEEEEEcccccHHHHHHHHhC---CEEEEEECCHHHHHHHHHHHhh--------------CCCcEEE
Confidence 3456677777778899999999999999999987 7999999999999999887631 3489999
Q ss_pred EcCccccCCCC----CCcc
Q 002218 782 DGSITVFDSRL----HGFD 796 (952)
Q Consensus 782 qGDa~dLpf~d----~sFD 796 (952)
++|+.++++.. ..||
T Consensus 81 ~~D~~~~~~~~~~~~~~~~ 99 (255)
T 3tqs_A 81 QNDALQFDFSSVKTDKPLR 99 (255)
T ss_dssp ESCTTTCCGGGSCCSSCEE
T ss_pred EcchHhCCHHHhccCCCeE
Confidence 99999987643 4688
No 250
>3m4x_A NOL1/NOP2/SUN family protein; mtase domain, PUA domain, RRM motif, transferase; 2.28A {Enterococcus faecium}
Probab=98.60 E-value=4.7e-08 Score=111.40 Aligned_cols=119 Identities=13% Similarity=0.039 Sum_probs=87.0
Q ss_pred HHHHHhhcCCCCEEEEEcCccchHHHHHhcCCCCCceEEEEeCChHHHHHHHHHHhhhhhcccccCCCCCCCccEEEEEc
Q 002218 704 YALQHIKESCATTLVDFGCGSGSLLDSLLDYPTALEKIVGVDISQKSLSRAAKIIHSKLSKKLDAAVPCTDVKSAVLFDG 783 (952)
Q Consensus 704 fVldlL~~~k~krVLDIGCGeG~ll~~LAr~g~~~~qVVGVDISeemLe~ArkrLsa~la~~~~~l~Pr~~~~nVtf~qG 783 (952)
.+...+...++.+|||+|||+|..+..+++..+...+|+|+|+++.+++.+++++.. .+..++.+.++
T Consensus 96 l~~~~L~~~~g~~VLDlcaGpGgkt~~lA~~~~~~g~V~AvDis~~rl~~~~~n~~r------------~g~~nv~v~~~ 163 (456)
T 3m4x_A 96 IVGTAAAAKPGEKVLDLCAAPGGKSTQLAAQMKGKGLLVTNEIFPKRAKILSENIER------------WGVSNAIVTNH 163 (456)
T ss_dssp HHHHHHCCCTTCEEEESSCTTCHHHHHHHHHHTTCSEEEEECSSHHHHHHHHHHHHH------------HTCSSEEEECC
T ss_pred HHHHHcCCCCCCEEEEECCCcCHHHHHHHHHcCCCCEEEEEeCCHHHHHHHHHHHHH------------cCCCceEEEeC
Confidence 455556667789999999999999999887522236899999999999999988753 24457999999
Q ss_pred CccccCC-CCCCccEEEE------ccccccCCh--------------hHHHHHHHHHHHccCCC-EEEEEecC
Q 002218 784 SITVFDS-RLHGFDIGTC------LEVIEHMEE--------------DEASQFGNIVLSSFRPR-ILIVSTPN 834 (952)
Q Consensus 784 Da~dLpf-~d~sFDVVVc------ieVIEHL~d--------------D~l~~L~eeI~RvLKPG-~LIISTPN 834 (952)
|+.+++. ..+.||+|++ .+++.+-++ .....+.+.+.++|||| .++.+|..
T Consensus 164 Da~~l~~~~~~~FD~Il~DaPCSg~G~~rr~p~~~~~~~~~~~~~l~~~Q~~iL~~a~~~LkpGG~LvYsTCs 236 (456)
T 3m4x_A 164 APAELVPHFSGFFDRIVVDAPCSGEGMFRKDPNAIKEWTEESPLYCQKRQQEILSSAIKMLKNKGQLIYSTCT 236 (456)
T ss_dssp CHHHHHHHHTTCEEEEEEECCCCCGGGTTTCHHHHHHCCTTHHHHHHHHHHHHHHHHHHTEEEEEEEEEEESC
T ss_pred CHHHhhhhccccCCEEEECCCCCCccccccCHHHhhhcCHHHHHHHHHHHHHHHHHHHHhcCCCcEEEEEEee
Confidence 9988752 3578999997 233333221 11225566799999998 77777653
No 251
>3v97_A Ribosomal RNA large subunit methyltransferase L; YCBY, RNA methyltransferase, ribosome RNA, SAH, RLML; HET: SAH OSU; 2.20A {Escherichia coli} PDB: 3v8v_A*
Probab=98.58 E-value=7.7e-08 Score=114.65 Aligned_cols=106 Identities=11% Similarity=0.066 Sum_probs=80.2
Q ss_pred CCCEEEEEcCccchHHHHHhcCCCCCceEEEEeCChHHHHHHHHHHhhhhhcccccCCCCCCC--ccEEEEEcCcccc-C
Q 002218 713 CATTLVDFGCGSGSLLDSLLDYPTALEKIVGVDISQKSLSRAAKIIHSKLSKKLDAAVPCTDV--KSAVLFDGSITVF-D 789 (952)
Q Consensus 713 k~krVLDIGCGeG~ll~~LAr~g~~~~qVVGVDISeemLe~ArkrLsa~la~~~~~l~Pr~~~--~nVtf~qGDa~dL-p 789 (952)
++++|||+|||+|.++..+++.+. .+|++||+|+.+++.|++++.. .+. .+++++++|+.+. +
T Consensus 539 ~g~~VLDlg~GtG~~sl~aa~~ga--~~V~aVD~s~~al~~a~~N~~~------------ngl~~~~v~~i~~D~~~~l~ 604 (703)
T 3v97_A 539 KGKDFLNLFSYTGSATVHAGLGGA--RSTTTVDMSRTYLEWAERNLRL------------NGLTGRAHRLIQADCLAWLR 604 (703)
T ss_dssp TTCEEEEESCTTCHHHHHHHHTTC--SEEEEEESCHHHHHHHHHHHHH------------TTCCSTTEEEEESCHHHHHH
T ss_pred CCCcEEEeeechhHHHHHHHHCCC--CEEEEEeCCHHHHHHHHHHHHH------------cCCCccceEEEecCHHHHHH
Confidence 678999999999999999998763 5799999999999999988753 122 3799999999873 3
Q ss_pred CCCCCccEEEEcc-----------ccccCChhHHHHHHHHHHHccCCC-EEEEEecC
Q 002218 790 SRLHGFDIGTCLE-----------VIEHMEEDEASQFGNIVLSSFRPR-ILIVSTPN 834 (952)
Q Consensus 790 f~d~sFDVVVcie-----------VIEHL~dD~l~~L~eeI~RvLKPG-~LIISTPN 834 (952)
...+.||+|++.- ++++. .....+...+.++|+|| .+++++..
T Consensus 605 ~~~~~fD~Ii~DPP~f~~~~~~~~~~~~~--~~~~~ll~~a~~~LkpgG~L~~s~~~ 659 (703)
T 3v97_A 605 EANEQFDLIFIDPPTFSNSKRMEDAFDVQ--RDHLALMKDLKRLLRAGGTIMFSNNK 659 (703)
T ss_dssp HCCCCEEEEEECCCSBC-------CCBHH--HHHHHHHHHHHHHEEEEEEEEEEECC
T ss_pred hcCCCccEEEECCccccCCccchhHHHHH--HHHHHHHHHHHHhcCCCcEEEEEECC
Confidence 3457899999832 22222 22344556799999999 66666654
No 252
>3dou_A Ribosomal RNA large subunit methyltransferase J; cell division, structural genomics, protein structure initiative, PSI; HET: SAM; 1.45A {Thermoplasma volcanium} SCOP: c.66.1.0
Probab=98.58 E-value=2.9e-07 Score=92.19 Aligned_cols=97 Identities=10% Similarity=0.142 Sum_probs=68.7
Q ss_pred CCCCEEEEEcCccchHHHHHhcCCCCCceEEEEeCChHHHHHHHHHHhhhhhcccccCCCCCCCccEEEEEcCccccCCC
Q 002218 712 SCATTLVDFGCGSGSLLDSLLDYPTALEKIVGVDISQKSLSRAAKIIHSKLSKKLDAAVPCTDVKSAVLFDGSITVFDSR 791 (952)
Q Consensus 712 ~k~krVLDIGCGeG~ll~~LAr~g~~~~qVVGVDISeemLe~ArkrLsa~la~~~~~l~Pr~~~~nVtf~qGDa~dLpf~ 791 (952)
.++.+|||+|||+|.++..+++.+ .+|+|||+++.. ...+++++++|+.+.+..
T Consensus 24 ~~g~~VLDlG~G~G~~s~~la~~~---~~V~gvD~~~~~-----------------------~~~~v~~~~~D~~~~~~~ 77 (191)
T 3dou_A 24 RKGDAVIEIGSSPGGWTQVLNSLA---RKIISIDLQEME-----------------------EIAGVRFIRCDIFKETIF 77 (191)
T ss_dssp CTTCEEEEESCTTCHHHHHHTTTC---SEEEEEESSCCC-----------------------CCTTCEEEECCTTSSSHH
T ss_pred CCCCEEEEEeecCCHHHHHHHHcC---CcEEEEeccccc-----------------------cCCCeEEEEccccCHHHH
Confidence 367899999999999999999985 799999998741 123789999999876421
Q ss_pred -----------CCCccEEEEccccccCC---h------hHHHHHHHHHHHccCCC-EEEEEecC
Q 002218 792 -----------LHGFDIGTCLEVIEHME---E------DEASQFGNIVLSSFRPR-ILIVSTPN 834 (952)
Q Consensus 792 -----------d~sFDVVVcieVIEHL~---d------D~l~~L~eeI~RvLKPG-~LIISTPN 834 (952)
.+.||+|+|........ . +......+.+.++|||| .+++.+..
T Consensus 78 ~~~~~~~~~~~~~~~D~Vlsd~~~~~~g~~~~d~~~~~~l~~~~l~~a~~~LkpGG~lv~k~~~ 141 (191)
T 3dou_A 78 DDIDRALREEGIEKVDDVVSDAMAKVSGIPSRDHAVSYQIGQRVMEIAVRYLRNGGNVLLKQFQ 141 (191)
T ss_dssp HHHHHHHHHHTCSSEEEEEECCCCCCCSCHHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEEEEC
T ss_pred HHHHHHhhcccCCcceEEecCCCcCCCCCcccCHHHHHHHHHHHHHHHHHHccCCCEEEEEEcC
Confidence 14899999954321111 0 11234445689999999 66665543
No 253
>3bt7_A TRNA (uracil-5-)-methyltransferase; methyluridine, methyltransferase, TRMA, RUMT; HET: 5MU; 2.43A {Escherichia coli}
Probab=98.58 E-value=5.3e-08 Score=106.92 Aligned_cols=112 Identities=16% Similarity=0.184 Sum_probs=78.4
Q ss_pred HHHHHHHHHHhhcCCCCEEEEEcCccchHHHHHhcCCCCCceEEEEeCChHHHHHHHHHHhhhhhcccccCCCCCCCccE
Q 002218 699 KQRVEYALQHIKESCATTLVDFGCGSGSLLDSLLDYPTALEKIVGVDISQKSLSRAAKIIHSKLSKKLDAAVPCTDVKSA 778 (952)
Q Consensus 699 ~QR~efVldlL~~~k~krVLDIGCGeG~ll~~LAr~g~~~~qVVGVDISeemLe~ArkrLsa~la~~~~~l~Pr~~~~nV 778 (952)
.+.++++.+.+... +.+|||+|||+|.++..|++.. .+|+|||+++.+++.|++++.. .+..++
T Consensus 200 ~~l~~~~~~~~~~~-~~~vLDl~cG~G~~~l~la~~~---~~V~gvd~~~~ai~~a~~n~~~------------ng~~~v 263 (369)
T 3bt7_A 200 IQMLEWALDVTKGS-KGDLLELYCGNGNFSLALARNF---DRVLATEIAKPSVAAAQYNIAA------------NHIDNV 263 (369)
T ss_dssp HHHHHHHHHHTTTC-CSEEEEESCTTSHHHHHHGGGS---SEEEEECCCHHHHHHHHHHHHH------------TTCCSE
T ss_pred HHHHHHHHHHhhcC-CCEEEEccCCCCHHHHHHHhcC---CEEEEEECCHHHHHHHHHHHHH------------cCCCce
Confidence 45666777766543 5789999999999999999865 7999999999999999987642 234589
Q ss_pred EEEEcCccccCC--CC--------------CCccEEEEccccccCChhHHHHHHHHHHHccCCC-EEEEEecC
Q 002218 779 VLFDGSITVFDS--RL--------------HGFDIGTCLEVIEHMEEDEASQFGNIVLSSFRPR-ILIVSTPN 834 (952)
Q Consensus 779 tf~qGDa~dLpf--~d--------------~sFDVVVcieVIEHL~dD~l~~L~eeI~RvLKPG-~LIISTPN 834 (952)
+++++|+.++.. .. ..||+|++.- +. ..+.+.+.+.|+++ .+++.+-|
T Consensus 264 ~~~~~d~~~~~~~~~~~~~~~~l~~~~~~~~~fD~Vv~dP-------Pr-~g~~~~~~~~l~~~g~ivyvsc~ 328 (369)
T 3bt7_A 264 QIIRMAAEEFTQAMNGVREFNRLQGIDLKSYQCETIFVDP-------PR-SGLDSETEKMVQAYPRILYISCN 328 (369)
T ss_dssp EEECCCSHHHHHHHSSCCCCTTGGGSCGGGCCEEEEEECC-------CT-TCCCHHHHHHHTTSSEEEEEESC
T ss_pred EEEECCHHHHHHHHhhccccccccccccccCCCCEEEECc-------Cc-cccHHHHHHHHhCCCEEEEEECC
Confidence 999999977521 11 3799998631 11 11112355556665 65555544
No 254
>2p41_A Type II methyltransferase; vizier, viral enzymes involved in replication, dengue virus methyltransferase, structural genomics; HET: G1G SAH CIT; 1.80A {Dengue virus 2} SCOP: c.66.1.25 PDB: 2p1d_A* 1l9k_A* 2p3o_A* 2p3q_A* 2p40_A* 2p3l_A* 1r6a_A*
Probab=98.57 E-value=4.8e-08 Score=105.40 Aligned_cols=103 Identities=16% Similarity=0.078 Sum_probs=70.7
Q ss_pred CCCEEEEEcCccchHHHHHhcCCCCCceEEEEeC----ChHHHHHHHHHHhhhhhcccccCCCCCCCccEEEEEc-Cccc
Q 002218 713 CATTLVDFGCGSGSLLDSLLDYPTALEKIVGVDI----SQKSLSRAAKIIHSKLSKKLDAAVPCTDVKSAVLFDG-SITV 787 (952)
Q Consensus 713 k~krVLDIGCGeG~ll~~LAr~g~~~~qVVGVDI----SeemLe~ArkrLsa~la~~~~~l~Pr~~~~nVtf~qG-Da~d 787 (952)
++.+|||||||+|.++..+++.+ +|+|||+ ++.+++.+. . .+.+.+++++.++ |+.+
T Consensus 82 ~g~~VLDlGcG~G~~s~~la~~~----~V~gvD~~~~~~~~~~~~~~--~------------~~~~~~~v~~~~~~D~~~ 143 (305)
T 2p41_A 82 PEGKVVDLGCGRGGWSYYCGGLK----NVREVKGLTKGGPGHEEPIP--M------------STYGWNLVRLQSGVDVFF 143 (305)
T ss_dssp CCEEEEEETCTTSHHHHHHHTST----TEEEEEEECCCSTTSCCCCC--C------------CSTTGGGEEEECSCCTTT
T ss_pred CCCEEEEEcCCCCHHHHHHHhcC----CEEEEeccccCchhHHHHHH--h------------hhcCCCCeEEEecccccc
Confidence 56799999999999999999873 7999999 554432110 0 0112357999999 8887
Q ss_pred cCCCCCCccEEEEccccc---cCChhHHH-HHHHHHHHccCCC-EEEEEecCC
Q 002218 788 FDSRLHGFDIGTCLEVIE---HMEEDEAS-QFGNIVLSSFRPR-ILIVSTPNY 835 (952)
Q Consensus 788 Lpf~d~sFDVVVcieVIE---HL~dD~l~-~L~eeI~RvLKPG-~LIISTPN~ 835 (952)
++ ...||+|+|..... +..+.... ...+.+.++|||| .+++.++..
T Consensus 144 l~--~~~fD~V~sd~~~~~g~~~~d~~~~l~~L~~~~~~LkpGG~~v~kv~~~ 194 (305)
T 2p41_A 144 IP--PERCDTLLCDIGESSPNPTVEAGRTLRVLNLVENWLSNNTQFCVKVLNP 194 (305)
T ss_dssp SC--CCCCSEEEECCCCCCSSHHHHHHHHHHHHHHHHHHCCTTCEEEEEESCC
T ss_pred CC--cCCCCEEEECCccccCcchhhHHHHHHHHHHHHHHhCCCCEEEEEeCCC
Confidence 75 46899999966542 22211110 2345688999999 777766654
No 255
>3k6r_A Putative transferase PH0793; structural genomics, PSI structure initiative, midwest center for structural genomic unknown function; 2.10A {Pyrococcus horikoshii} PDB: 3a25_A* 3a26_A*
Probab=98.57 E-value=1.4e-07 Score=101.10 Aligned_cols=119 Identities=19% Similarity=0.147 Sum_probs=88.4
Q ss_pred hhhcCCchhHHHHHHHHHHHhhcCCCCEEEEEcCccchHHHHHhcCCCCCceEEEEeCChHHHHHHHHHHhhhhhccccc
Q 002218 689 EQALFSPPLSKQRVEYALQHIKESCATTLVDFGCGSGSLLDSLLDYPTALEKIVGVDISQKSLSRAAKIIHSKLSKKLDA 768 (952)
Q Consensus 689 e~~~F~PPL~~QR~efVldlL~~~k~krVLDIGCGeG~ll~~LAr~g~~~~qVVGVDISeemLe~ArkrLsa~la~~~~~ 768 (952)
...+|++.+..+|... .+.+. ++.+|||+|||+|.++..+++.+. .+|+++|+++.+++.+++++...
T Consensus 104 ~k~~f~~~~~~er~ri-~~~~~--~g~~VlD~~aG~G~~~i~~a~~g~--~~V~avD~np~a~~~~~~N~~~N------- 171 (278)
T 3k6r_A 104 AKIMFSPANVKERVRM-AKVAK--PDELVVDMFAGIGHLSLPIAVYGK--AKVIAIEKDPYTFKFLVENIHLN------- 171 (278)
T ss_dssp TTSCCCGGGHHHHHHH-HHHCC--TTCEEEETTCTTTTTTHHHHHHTC--CEEEEECCCHHHHHHHHHHHHHT-------
T ss_pred cceEEcCCcHHHHHHH-HHhcC--CCCEEEEecCcCcHHHHHHHHhcC--CeEEEEECCHHHHHHHHHHHHHc-------
Confidence 3467888888888653 34333 678999999999999999998874 68999999999999999887531
Q ss_pred CCCCCCCccEEEEEcCccccCCCCCCccEEEEccccccCChhHHHHHHHHHHHccCCC-EEEE
Q 002218 769 AVPCTDVKSAVLFDGSITVFDSRLHGFDIGTCLEVIEHMEEDEASQFGNIVLSSFRPR-ILIV 830 (952)
Q Consensus 769 l~Pr~~~~nVtf~qGDa~dLpf~d~sFDVVVcieVIEHL~dD~l~~L~eeI~RvLKPG-~LII 830 (952)
+-..+++++++|+.++.. .+.||.|++... + .. ..|.+...++|||| .+.+
T Consensus 172 ----~v~~~v~~~~~D~~~~~~-~~~~D~Vi~~~p----~-~~-~~~l~~a~~~lk~gG~ih~ 223 (278)
T 3k6r_A 172 ----KVEDRMSAYNMDNRDFPG-ENIADRILMGYV----V-RT-HEFIPKALSIAKDGAIIHY 223 (278)
T ss_dssp ----TCTTTEEEECSCTTTCCC-CSCEEEEEECCC----S-SG-GGGHHHHHHHEEEEEEEEE
T ss_pred ----CCCCcEEEEeCcHHHhcc-ccCCCEEEECCC----C-cH-HHHHHHHHHHcCCCCEEEE
Confidence 122469999999988764 468999987522 1 11 23345678899998 4443
No 256
>3fut_A Dimethyladenosine transferase; methyltransferase, dimethyltransferase, dual-specific methyltransferase, 16S rRNA methyltransferase; 1.52A {Thermus thermophilus} PDB: 3fuu_A* 3fuv_A 3fuw_A* 3fux_A*
Probab=98.52 E-value=2e-07 Score=99.37 Aligned_cols=90 Identities=9% Similarity=0.073 Sum_probs=71.5
Q ss_pred HHHHHHHhhcCCCCEEEEEcCccchHHHHHhcCCCCCceEEEEeCChHHHHHHHHHHhhhhhcccccCCCCCCCccEEEE
Q 002218 702 VEYALQHIKESCATTLVDFGCGSGSLLDSLLDYPTALEKIVGVDISQKSLSRAAKIIHSKLSKKLDAAVPCTDVKSAVLF 781 (952)
Q Consensus 702 ~efVldlL~~~k~krVLDIGCGeG~ll~~LAr~g~~~~qVVGVDISeemLe~ArkrLsa~la~~~~~l~Pr~~~~nVtf~ 781 (952)
.+.+++.+...++ +|||||||+|.++..|++.+ .+|+|||+|++|++.+++++. ..+++++
T Consensus 36 ~~~Iv~~~~~~~~-~VLEIG~G~G~lt~~L~~~~---~~V~avEid~~~~~~l~~~~~---------------~~~v~vi 96 (271)
T 3fut_A 36 LRRIVEAARPFTG-PVFEVGPGLGALTRALLEAG---AEVTAIEKDLRLRPVLEETLS---------------GLPVRLV 96 (271)
T ss_dssp HHHHHHHHCCCCS-CEEEECCTTSHHHHHHHHTT---CCEEEEESCGGGHHHHHHHTT---------------TSSEEEE
T ss_pred HHHHHHhcCCCCC-eEEEEeCchHHHHHHHHHcC---CEEEEEECCHHHHHHHHHhcC---------------CCCEEEE
Confidence 3456666666677 99999999999999999987 799999999999999987642 1479999
Q ss_pred EcCccccCCCC-CCccEEEEccccccCChhH
Q 002218 782 DGSITVFDSRL-HGFDIGTCLEVIEHMEEDE 811 (952)
Q Consensus 782 qGDa~dLpf~d-~sFDVVVcieVIEHL~dD~ 811 (952)
++|+.++++.. ..+|.|+++ .-.++..+.
T Consensus 97 ~~D~l~~~~~~~~~~~~iv~N-lPy~iss~i 126 (271)
T 3fut_A 97 FQDALLYPWEEVPQGSLLVAN-LPYHIATPL 126 (271)
T ss_dssp ESCGGGSCGGGSCTTEEEEEE-ECSSCCHHH
T ss_pred ECChhhCChhhccCccEEEec-CcccccHHH
Confidence 99999988754 368888775 445666343
No 257
>2r6z_A UPF0341 protein in RSP 3' region; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 1.80A {Neisseria gonorrhoeae}
Probab=98.47 E-value=1.7e-07 Score=98.85 Aligned_cols=89 Identities=15% Similarity=0.031 Sum_probs=66.3
Q ss_pred HHHHHHhhcCCCCEEEEEcCccchHHHHHhcCCCCCceEEEEeCCh-------HHHHHHHHHHhhhhhcccccCCCCCCC
Q 002218 703 EYALQHIKESCATTLVDFGCGSGSLLDSLLDYPTALEKIVGVDISQ-------KSLSRAAKIIHSKLSKKLDAAVPCTDV 775 (952)
Q Consensus 703 efVldlL~~~k~krVLDIGCGeG~ll~~LAr~g~~~~qVVGVDISe-------emLe~ArkrLsa~la~~~~~l~Pr~~~ 775 (952)
+.+.+.+...++.+|||+|||+|.++..|++.+ .+|+|+|+++ ++++.|+++.... +.
T Consensus 73 ~~l~~a~~~~~~~~VLDlgcG~G~~a~~lA~~g---~~V~~vD~s~~~~~ll~~~l~~a~~n~~~~------------~~ 137 (258)
T 2r6z_A 73 ELIAKAVNHTAHPTVWDATAGLGRDSFVLASLG---LTVTAFEQHPAVACLLSDGIRRALLNPETQ------------DT 137 (258)
T ss_dssp CHHHHHTTGGGCCCEEETTCTTCHHHHHHHHTT---CCEEEEECCHHHHHHHHHHHHHHHHSHHHH------------HH
T ss_pred HHHHHHhCcCCcCeEEEeeCccCHHHHHHHHhC---CEEEEEECChhhhHHHHHHHHHHHhHHHhh------------CC
Confidence 344555544566899999999999999999986 7899999999 9999997654321 11
Q ss_pred -ccEEEEEcCcccc-C-CCC--CCccEEEEcccccc
Q 002218 776 -KSAVLFDGSITVF-D-SRL--HGFDIGTCLEVIEH 806 (952)
Q Consensus 776 -~nVtf~qGDa~dL-p-f~d--~sFDVVVcieVIEH 806 (952)
.+++++++|+.++ + +.+ ..||+|++.-.+.|
T Consensus 138 ~~ri~~~~~d~~~~l~~~~~~~~~fD~V~~dP~~~~ 173 (258)
T 2r6z_A 138 AARINLHFGNAAEQMPALVKTQGKPDIVYLDPMYPE 173 (258)
T ss_dssp HTTEEEEESCHHHHHHHHHHHHCCCSEEEECCCC--
T ss_pred ccCeEEEECCHHHHHHhhhccCCCccEEEECCCCCC
Confidence 2499999999875 2 233 68999999655554
No 258
>2b9e_A NOL1/NOP2/SUN domain family, member 5 isoform 2; methytransferase, structural genomics, structural genomics consortium, SGC; HET: SAM; 1.65A {Homo sapiens} SCOP: c.66.1.38
Probab=98.44 E-value=6.9e-07 Score=96.75 Aligned_cols=119 Identities=14% Similarity=0.073 Sum_probs=80.8
Q ss_pred HHHHHhhcCCCCEEEEEcCccchHHHHHhcCCCCCceEEEEeCChHHHHHHHHHHhhhhhcccccCCCCCCCccEEEEEc
Q 002218 704 YALQHIKESCATTLVDFGCGSGSLLDSLLDYPTALEKIVGVDISQKSLSRAAKIIHSKLSKKLDAAVPCTDVKSAVLFDG 783 (952)
Q Consensus 704 fVldlL~~~k~krVLDIGCGeG~ll~~LAr~g~~~~qVVGVDISeemLe~ArkrLsa~la~~~~~l~Pr~~~~nVtf~qG 783 (952)
.+...+...++.+|||+|||.|..+..|++..+...+|+|+|+++.+++.+++++.. .+..+++++++
T Consensus 93 l~~~~l~~~~g~~VLDlcaG~G~kt~~la~~~~~~g~V~a~D~~~~~l~~~~~n~~r------------~g~~~v~~~~~ 160 (309)
T 2b9e_A 93 LPAMLLDPPPGSHVIDACAAPGNKTSHLAALLKNQGKIFAFDLDAKRLASMATLLAR------------AGVSCCELAEE 160 (309)
T ss_dssp HHHHHHCCCTTCEEEESSCTTCHHHHHHHHHHTTCSEEEEEESCHHHHHHHHHHHHH------------TTCCSEEEEEC
T ss_pred HHHHHhCCCCCCEEEEeCCChhHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHH------------cCCCeEEEEeC
Confidence 344555666788999999999999999887421236999999999999999988753 24457999999
Q ss_pred CccccCCCC---CCccEEEE------ccccccCCh----------h------HHHHHHHHHHHccCCCEEEEEecC
Q 002218 784 SITVFDSRL---HGFDIGTC------LEVIEHMEE----------D------EASQFGNIVLSSFRPRILIVSTPN 834 (952)
Q Consensus 784 Da~dLpf~d---~sFDVVVc------ieVIEHL~d----------D------~l~~L~eeI~RvLKPG~LIISTPN 834 (952)
|+.+++... ..||+|++ .+++.+-++ + ....+.+...++++.|.++.+|-.
T Consensus 161 D~~~~~~~~~~~~~fD~Vl~D~PcSg~G~~~r~pd~~~~~~~~~~~~~~l~~~Q~~iL~~a~~~l~gG~lvYsTCs 236 (309)
T 2b9e_A 161 DFLAVSPSDPRYHEVHYILLDPSCSGSGMPSRQLEEPGAGTPSPVRLHALAGFQQRALCHALTFPSLQRLVYSTCS 236 (309)
T ss_dssp CGGGSCTTCGGGTTEEEEEECCCCCC------------------CCHHHHHHHHHHHHHHHTTCTTCCEEEEEESC
T ss_pred ChHhcCccccccCCCCEEEEcCCcCCCCCCccCCChhhhccCCHHHHHHHHHHHHHHHHHHHhccCCCEEEEECCC
Confidence 998876532 57999996 233332111 1 112344556677874577777653
No 259
>1yub_A Ermam, rRNA methyltransferase; MLS antibiotics; NMR {Streptococcus pneumoniae} SCOP: c.66.1.24
Probab=98.42 E-value=3.1e-08 Score=102.21 Aligned_cols=81 Identities=11% Similarity=0.201 Sum_probs=64.7
Q ss_pred HHHHHHhhcCCCCEEEEEcCccchHHHHHhcCCCCCceEEEEeCChHHHHHHHHHHhhhhhcccccCCCCCCCccEEEEE
Q 002218 703 EYALQHIKESCATTLVDFGCGSGSLLDSLLDYPTALEKIVGVDISQKSLSRAAKIIHSKLSKKLDAAVPCTDVKSAVLFD 782 (952)
Q Consensus 703 efVldlL~~~k~krVLDIGCGeG~ll~~LAr~g~~~~qVVGVDISeemLe~ArkrLsa~la~~~~~l~Pr~~~~nVtf~q 782 (952)
+.+.+.+...++.+|||+|||+|.++..+++.+ .+|+|+|+|+.+++.|++++. ...++++++
T Consensus 19 ~~i~~~~~~~~~~~VLDiG~G~G~~~~~l~~~~---~~v~~id~~~~~~~~a~~~~~--------------~~~~v~~~~ 81 (245)
T 1yub_A 19 NQIIKQLNLKETDTVYEIGTGKGHLTTKLAKIS---KQVTSIELDSHLFNLSSEKLK--------------LNTRVTLIH 81 (245)
T ss_dssp HHHHHHCCCCSSEEEEECSCCCSSCSHHHHHHS---SEEEESSSSCSSSSSSSCTTT--------------TCSEEEECC
T ss_pred HHHHHhcCCCCCCEEEEEeCCCCHHHHHHHHhC---CeEEEEECCHHHHHHHHHHhc--------------cCCceEEEE
Confidence 456666666677899999999999999999887 799999999999998865431 234799999
Q ss_pred cCccccCCCC-CCccEEEEc
Q 002218 783 GSITVFDSRL-HGFDIGTCL 801 (952)
Q Consensus 783 GDa~dLpf~d-~sFDVVVci 801 (952)
+|+.++++.. +.| .|++.
T Consensus 82 ~D~~~~~~~~~~~f-~vv~n 100 (245)
T 1yub_A 82 QDILQFQFPNKQRY-KIVGN 100 (245)
T ss_dssp SCCTTTTCCCSSEE-EEEEE
T ss_pred CChhhcCcccCCCc-EEEEe
Confidence 9999988763 578 55553
No 260
>2okc_A Type I restriction enzyme stysji M protein; NP_813429.1, N-6 DNA methylase, type I restriction enzyme ST protein; HET: SAM; 2.20A {Bacteroides thetaiotaomicron vpi-5482} SCOP: c.66.1.45
Probab=98.42 E-value=1.9e-07 Score=104.90 Aligned_cols=120 Identities=14% Similarity=0.157 Sum_probs=85.8
Q ss_pred HHHHHHHhhcCCCCEEEEEcCccchHHHHHhcCCC------------CCceEEEEeCChHHHHHHHHHHhhhhhcccccC
Q 002218 702 VEYALQHIKESCATTLVDFGCGSGSLLDSLLDYPT------------ALEKIVGVDISQKSLSRAAKIIHSKLSKKLDAA 769 (952)
Q Consensus 702 ~efVldlL~~~k~krVLDIGCGeG~ll~~LAr~g~------------~~~qVVGVDISeemLe~ArkrLsa~la~~~~~l 769 (952)
.+++++.+....+.+|||.|||+|.++..+++... ...+++|+|+++.+++.|+.++.-.
T Consensus 160 ~~~mv~~l~~~~~~~VlDpacGsG~fl~~~~~~l~~~~~~~~~~~~~~~~~i~G~Ei~~~~~~lA~~nl~l~-------- 231 (445)
T 2okc_A 160 IQAMVDCINPQMGETVCDPACGTGGFLLTAYDYMKGQSASKEKRDFLRDKALHGVDNTPLVVTLASMNLYLH-------- 231 (445)
T ss_dssp HHHHHHHHCCCTTCCEEETTCTTCHHHHHHHHHHHTCC-CCHHHHHHHHTTEEEEESCHHHHHHHHHHHHHT--------
T ss_pred HHHHHHHhCCCCCCEEeccCCCcchHHHHHHHHHHHhcCCHHHHHhhcCeEEEEEeCCHHHHHHHHHHHHHh--------
Confidence 34666777766778999999999999988775310 1157999999999999998765321
Q ss_pred CCCCCCc--cEEEEEcCccccCCCCCCccEEEEccccccCChh---------------HHHHHHHHHHHccCCC-EEEEE
Q 002218 770 VPCTDVK--SAVLFDGSITVFDSRLHGFDIGTCLEVIEHMEED---------------EASQFGNIVLSSFRPR-ILIVS 831 (952)
Q Consensus 770 ~Pr~~~~--nVtf~qGDa~dLpf~d~sFDVVVcieVIEHL~dD---------------~l~~L~eeI~RvLKPG-~LIIS 831 (952)
+.. ++.+.++|....+.. ..||+|++.--+.+.... ....|.+.+.+.|||| .+++.
T Consensus 232 ----g~~~~~~~i~~gD~l~~~~~-~~fD~Iv~NPPf~~~~~~~~~~~~~~~~~~~~~~~~~fl~~~~~~Lk~gG~~a~V 306 (445)
T 2okc_A 232 ----GIGTDRSPIVCEDSLEKEPS-TLVDVILANPPFGTRPAGSVDINRPDFYVETKNNQLNFLQHMMLMLKTGGRAAVV 306 (445)
T ss_dssp ----TCCSSCCSEEECCTTTSCCS-SCEEEEEECCCSSCCCTTCCCCCCTTSSSCCSCHHHHHHHHHHHHEEEEEEEEEE
T ss_pred ----CCCcCCCCEeeCCCCCCccc-CCcCEEEECCCCCCcccccchhhHhhcCCCCcchHHHHHHHHHHHhccCCEEEEE
Confidence 111 567889998776643 489999997554443211 1135667799999998 77777
Q ss_pred ecC
Q 002218 832 TPN 834 (952)
Q Consensus 832 TPN 834 (952)
+|+
T Consensus 307 ~p~ 309 (445)
T 2okc_A 307 LPD 309 (445)
T ss_dssp EEH
T ss_pred ECC
Confidence 775
No 261
>3ftd_A Dimethyladenosine transferase; KSGA, rossmann-like fold, RNA methyltransferase, mtase, anti resistance, methyltransferase, RNA-binding; 1.44A {Aquifex aeolicus} PDB: 3ftc_A 3fte_A 3ftf_A* 3r9x_B*
Probab=98.38 E-value=1.1e-06 Score=92.31 Aligned_cols=89 Identities=15% Similarity=0.240 Sum_probs=66.8
Q ss_pred HHHHHHHhhcCCCCEEEEEcCccchHHHHHhcCCCCCceEEEEeCChHHHHHHHHHHhhhhhcccccCCCCCCCccEEEE
Q 002218 702 VEYALQHIKESCATTLVDFGCGSGSLLDSLLDYPTALEKIVGVDISQKSLSRAAKIIHSKLSKKLDAAVPCTDVKSAVLF 781 (952)
Q Consensus 702 ~efVldlL~~~k~krVLDIGCGeG~ll~~LAr~g~~~~qVVGVDISeemLe~ArkrLsa~la~~~~~l~Pr~~~~nVtf~ 781 (952)
.+.+.+.+...++.+|||||||+|.++..|++.+. .+|+|||+|+.+++.++++ ...+++++
T Consensus 20 ~~~iv~~~~~~~~~~VLDiG~G~G~lt~~L~~~~~--~~v~avEid~~~~~~~~~~----------------~~~~v~~i 81 (249)
T 3ftd_A 20 LKKIAEELNIEEGNTVVEVGGGTGNLTKVLLQHPL--KKLYVIELDREMVENLKSI----------------GDERLEVI 81 (249)
T ss_dssp HHHHHHHTTCCTTCEEEEEESCHHHHHHHHTTSCC--SEEEEECCCHHHHHHHTTS----------------CCTTEEEE
T ss_pred HHHHHHhcCCCCcCEEEEEcCchHHHHHHHHHcCC--CeEEEEECCHHHHHHHHhc----------------cCCCeEEE
Confidence 34566666666788999999999999999998842 7999999999999999653 12479999
Q ss_pred EcCccccCCCCCCccEEEEccccccCC
Q 002218 782 DGSITVFDSRLHGFDIGTCLEVIEHME 808 (952)
Q Consensus 782 qGDa~dLpf~d~sFDVVVcieVIEHL~ 808 (952)
++|+.++++.+..-+.++....-.++.
T Consensus 82 ~~D~~~~~~~~~~~~~~vv~NlPy~i~ 108 (249)
T 3ftd_A 82 NEDASKFPFCSLGKELKVVGNLPYNVA 108 (249)
T ss_dssp CSCTTTCCGGGSCSSEEEEEECCTTTH
T ss_pred EcchhhCChhHccCCcEEEEECchhcc
Confidence 999999887542213344444445555
No 262
>1m6y_A S-adenosyl-methyltransferase MRAW; SAM-dependent methyltransferase fold, protein-cofactor product complex, structural genomics, PSI; HET: SAH; 1.90A {Thermotoga maritima} SCOP: a.60.13.1 c.66.1.23 PDB: 1n2x_A*
Probab=98.32 E-value=5.4e-07 Score=97.42 Aligned_cols=84 Identities=18% Similarity=0.211 Sum_probs=66.7
Q ss_pred HHHHHhhcCCCCEEEEEcCccchHHHHHhcCCCCCceEEEEeCChHHHHHHHHHHhhhhhcccccCCCCCCCccEEEEEc
Q 002218 704 YALQHIKESCATTLVDFGCGSGSLLDSLLDYPTALEKIVGVDISQKSLSRAAKIIHSKLSKKLDAAVPCTDVKSAVLFDG 783 (952)
Q Consensus 704 fVldlL~~~k~krVLDIGCGeG~ll~~LAr~g~~~~qVVGVDISeemLe~ArkrLsa~la~~~~~l~Pr~~~~nVtf~qG 783 (952)
.+++.+...++.+|||+|||+|.++..+++..+ ..+|+|||+|+.|++.|++++.. .+ .+++++++
T Consensus 17 e~l~~L~~~~g~~vLD~g~G~G~~s~~la~~~~-~~~VigvD~d~~al~~A~~~~~~------------~g-~~v~~v~~ 82 (301)
T 1m6y_A 17 EVIEFLKPEDEKIILDCTVGEGGHSRAILEHCP-GCRIIGIDVDSEVLRIAEEKLKE------------FS-DRVSLFKV 82 (301)
T ss_dssp HHHHHHCCCTTCEEEETTCTTSHHHHHHHHHCT-TCEEEEEESCHHHHHHHHHHTGG------------GT-TTEEEEEC
T ss_pred HHHHhcCCCCCCEEEEEeCCcCHHHHHHHHHCC-CCEEEEEECCHHHHHHHHHHHHh------------cC-CcEEEEEC
Confidence 455666666788999999999999999998742 37999999999999999987642 12 48999999
Q ss_pred CccccCC--C---CCCccEEEEc
Q 002218 784 SITVFDS--R---LHGFDIGTCL 801 (952)
Q Consensus 784 Da~dLpf--~---d~sFDVVVci 801 (952)
|+.+++. . ...||.|++.
T Consensus 83 d~~~l~~~l~~~g~~~~D~Vl~D 105 (301)
T 1m6y_A 83 SYREADFLLKTLGIEKVDGILMD 105 (301)
T ss_dssp CGGGHHHHHHHTTCSCEEEEEEE
T ss_pred CHHHHHHHHHhcCCCCCCEEEEc
Confidence 9988752 1 1579999873
No 263
>3uzu_A Ribosomal RNA small subunit methyltransferase A; ssgcid, seattle structural genomics center for infectio disease; 1.75A {Burkholderia pseudomallei}
Probab=98.29 E-value=1.4e-06 Score=93.19 Aligned_cols=74 Identities=16% Similarity=0.272 Sum_probs=59.4
Q ss_pred HHHHHHHhhcCCCCEEEEEcCccchHHHHHhcCCCC-CceEEEEeCChHHHHHHHHHHhhhhhcccccCCCCCCCccEEE
Q 002218 702 VEYALQHIKESCATTLVDFGCGSGSLLDSLLDYPTA-LEKIVGVDISQKSLSRAAKIIHSKLSKKLDAAVPCTDVKSAVL 780 (952)
Q Consensus 702 ~efVldlL~~~k~krVLDIGCGeG~ll~~LAr~g~~-~~qVVGVDISeemLe~ArkrLsa~la~~~~~l~Pr~~~~nVtf 780 (952)
.+.+++.+...++.+|||||||+|.++..|++.+.. ..+|+|||+|+.|++.++++. ..++++
T Consensus 31 ~~~iv~~~~~~~~~~VLEIG~G~G~lt~~La~~~~~~~~~V~avDid~~~l~~a~~~~----------------~~~v~~ 94 (279)
T 3uzu_A 31 IDAIVAAIRPERGERMVEIGPGLGALTGPVIARLATPGSPLHAVELDRDLIGRLEQRF----------------GELLEL 94 (279)
T ss_dssp HHHHHHHHCCCTTCEEEEECCTTSTTHHHHHHHHCBTTBCEEEEECCHHHHHHHHHHH----------------GGGEEE
T ss_pred HHHHHHhcCCCCcCEEEEEccccHHHHHHHHHhCCCcCCeEEEEECCHHHHHHHHHhc----------------CCCcEE
Confidence 345666666677889999999999999999987621 123999999999999998762 137999
Q ss_pred EEcCccccCCC
Q 002218 781 FDGSITVFDSR 791 (952)
Q Consensus 781 ~qGDa~dLpf~ 791 (952)
+++|+.++++.
T Consensus 95 i~~D~~~~~~~ 105 (279)
T 3uzu_A 95 HAGDALTFDFG 105 (279)
T ss_dssp EESCGGGCCGG
T ss_pred EECChhcCChh
Confidence 99999998764
No 264
>2dul_A N(2),N(2)-dimethylguanosine tRNA methyltransferas; tRNA modification enzyme, guanine 26, N(2),N(2)-dimethyltran structural genomics; 1.90A {Pyrococcus horikoshii} SCOP: c.66.1.58 PDB: 2ejt_A* 2eju_A* 2ytz_A*
Probab=98.26 E-value=1.1e-06 Score=97.63 Aligned_cols=133 Identities=14% Similarity=0.065 Sum_probs=82.9
Q ss_pred hhcCCchhHHHHHHHHHHHhhcCCCCEEEEEcCccchHHHHHhcCCCCCceEEEEeCChHHHHHHHHHHhhhhhcccccC
Q 002218 690 QALFSPPLSKQRVEYALQHIKESCATTLVDFGCGSGSLLDSLLDYPTALEKIVGVDISQKSLSRAAKIIHSKLSKKLDAA 769 (952)
Q Consensus 690 ~~~F~PPL~~QR~efVldlL~~~k~krVLDIGCGeG~ll~~LAr~g~~~~qVVGVDISeemLe~ArkrLsa~la~~~~~l 769 (952)
...|+.|-...-.+.....+...++.+|||+|||+|.++..+++..+ ..+|+++|+++++++.+++++....... .
T Consensus 24 ~~~F~np~~~~nr~l~~~~l~~~~~~~VLDl~aGtG~~~l~~a~~~~-~~~V~avDi~~~av~~a~~N~~~n~~~~---~ 99 (378)
T 2dul_A 24 SPVFYNPRMALNRDIVVVLLNILNPKIVLDALSATGIRGIRFALETP-AEEVWLNDISEDAYELMKRNVMLNFDGE---L 99 (378)
T ss_dssp -CCCCCGGGHHHHHHHHHHHHHHCCSEEEESSCTTSHHHHHHHHHSS-CSEEEEEESCHHHHHHHHHHHHHHCCSC---C
T ss_pred CCceeCCchHHHHHHHHHHHHHcCCCEEEECCCchhHHHHHHHHhCC-CCeEEEEECCHHHHHHHHHHHHHhcccc---c
Confidence 34555443333223322222333678999999999999999888631 2579999999999999999876421000 0
Q ss_pred CCC------CCCccEEEEEcCccccCCC-CCCccEEEEccccccCChhHHHHHHHHHHHccCCC-EEEEEe
Q 002218 770 VPC------TDVKSAVLFDGSITVFDSR-LHGFDIGTCLEVIEHMEEDEASQFGNIVLSSFRPR-ILIVST 832 (952)
Q Consensus 770 ~Pr------~~~~nVtf~qGDa~dLpf~-d~sFDVVVcieVIEHL~dD~l~~L~eeI~RvLKPG-~LIIST 832 (952)
.+. .+..+++++++|+.++... ...||+|+.- -.. . ...+.+.+.+.|+|| .++++.
T Consensus 100 ~~~~~~~~~~gl~~i~v~~~Da~~~~~~~~~~fD~I~lD-P~~----~-~~~~l~~a~~~lk~gG~l~vt~ 164 (378)
T 2dul_A 100 RESKGRAILKGEKTIVINHDDANRLMAERHRYFHFIDLD-PFG----S-PMEFLDTALRSAKRRGILGVTA 164 (378)
T ss_dssp EECSSEEEEESSSEEEEEESCHHHHHHHSTTCEEEEEEC-CSS----C-CHHHHHHHHHHEEEEEEEEEEE
T ss_pred ccccccccccCCCceEEEcCcHHHHHHhccCCCCEEEeC-CCC----C-HHHHHHHHHHhcCCCCEEEEEe
Confidence 000 0233599999999775432 3579999842 211 1 124456688999998 555543
No 265
>3v97_A Ribosomal RNA large subunit methyltransferase L; YCBY, RNA methyltransferase, ribosome RNA, SAH, RLML; HET: SAH OSU; 2.20A {Escherichia coli} PDB: 3v8v_A*
Probab=98.22 E-value=2.6e-06 Score=101.58 Aligned_cols=134 Identities=13% Similarity=0.082 Sum_probs=88.3
Q ss_pred chhHHHHHHHHHHHhhcCCCCEEEEEcCccchHHHHHhcCC---------------------------------------
Q 002218 695 PPLSKQRVEYALQHIKESCATTLVDFGCGSGSLLDSLLDYP--------------------------------------- 735 (952)
Q Consensus 695 PPL~~QR~efVldlL~~~k~krVLDIGCGeG~ll~~LAr~g--------------------------------------- 735 (952)
-|+.+.-...++......++..|||.+||+|.++...+..+
T Consensus 172 apl~e~LAa~ll~~~~~~~~~~llDP~CGSGt~lIeAa~~a~~~apG~~R~~f~fe~w~~~~~~~w~~~~~ea~~~~~~~ 251 (703)
T 3v97_A 172 APIKETLAAAIVMRSGWQPGTPLLDPMCGSGTLLIEAAMLATDRAPGLHRGRWGFSGWAQHDEAIWQEVKAEAQTRARKG 251 (703)
T ss_dssp CSSCHHHHHHHHHHTTCCTTSCEEETTCTTSHHHHHHHHHHTTCCTTTTCCCCTTTTBTTCCHHHHHHHHHHHHHHHHHH
T ss_pred CCCcHHHHHHHHHhhCCCCCCeEEecCCCCcHHHHHHHHHHhhcCCCCCccccchhhcccCCHHHHHHHHHHHHHHhhhc
Confidence 36666655666666666677899999999999998766431
Q ss_pred --CCCceEEEEeCChHHHHHHHHHHhhhhhcccccCCCCCCCccEEEEEcCccccCCC--CCCccEEEEcccc-ccCC-h
Q 002218 736 --TALEKIVGVDISQKSLSRAAKIIHSKLSKKLDAAVPCTDVKSAVLFDGSITVFDSR--LHGFDIGTCLEVI-EHME-E 809 (952)
Q Consensus 736 --~~~~qVVGVDISeemLe~ArkrLsa~la~~~~~l~Pr~~~~nVtf~qGDa~dLpf~--d~sFDVVVcieVI-EHL~-d 809 (952)
.+..+|+|+|+++.+++.|++++... +....+++.++|+.++..+ .+.||+|++.=-. +.+. .
T Consensus 252 ~~~~~~~i~G~Did~~av~~A~~N~~~a-----------gv~~~i~~~~~D~~~~~~~~~~~~~d~Iv~NPPYG~Rlg~~ 320 (703)
T 3v97_A 252 LAEYSSHFYGSDSDARVIQRARTNARLA-----------GIGELITFEVKDVAQLTNPLPKGPYGTVLSNPPYGERLDSE 320 (703)
T ss_dssp HHHCCCCEEEEESCHHHHHHHHHHHHHT-----------TCGGGEEEEECCGGGCCCSCTTCCCCEEEECCCCCC---CC
T ss_pred cccCCccEEEEECCHHHHHHHHHHHHHc-----------CCCCceEEEECChhhCccccccCCCCEEEeCCCccccccch
Confidence 01147999999999999999887531 1223599999999987433 3489999997211 1222 1
Q ss_pred hHHHHHHHH---HHHccCCC-EEEEEecCCchhH
Q 002218 810 DEASQFGNI---VLSSFRPR-ILIVSTPNYEYNA 839 (952)
Q Consensus 810 D~l~~L~ee---I~RvLKPG-~LIISTPN~efN~ 839 (952)
+....+.+. +.+.+.|| .+.+-|++.++..
T Consensus 321 ~~l~~ly~~l~~~lk~~~~g~~~~ilt~~~~l~~ 354 (703)
T 3v97_A 321 PALIALHSLLGRIMKNQFGGWNLSLFSASPDLLS 354 (703)
T ss_dssp HHHHHHHHHHHHHHHHHCTTCEEEEEESCHHHHH
T ss_pred hHHHHHHHHHHHHHHhhCCCCeEEEEeCCHHHHH
Confidence 232333333 34444577 7777788865543
No 266
>2xyq_A Putative 2'-O-methyl transferase; transferase-viral protein complex, rossman fold; HET: SAH; 2.00A {Sars coronavirus} PDB: 2xyv_A* 2xyr_A*
Probab=98.21 E-value=1.9e-06 Score=92.99 Aligned_cols=97 Identities=11% Similarity=0.119 Sum_probs=64.4
Q ss_pred cCCCCEEEEEcC------ccchHHHHHhcCCCCCceEEEEeCChHHHHHHHHHHhhhhhcccccCCCCCCCccEEE-EEc
Q 002218 711 ESCATTLVDFGC------GSGSLLDSLLDYPTALEKIVGVDISQKSLSRAAKIIHSKLSKKLDAAVPCTDVKSAVL-FDG 783 (952)
Q Consensus 711 ~~k~krVLDIGC------GeG~ll~~LAr~g~~~~qVVGVDISeemLe~ArkrLsa~la~~~~~l~Pr~~~~nVtf-~qG 783 (952)
..++.+|||+|| |+|. ..+++..++..+|+|+|+++. +. ++++ +++
T Consensus 61 l~~g~~VLDLGcGsg~~~GpGs--~~~a~~~~~~~~V~gvDis~~--------v~-----------------~v~~~i~g 113 (290)
T 2xyq_A 61 VPYNMRVIHFGAGSDKGVAPGT--AVLRQWLPTGTLLVDSDLNDF--------VS-----------------DADSTLIG 113 (290)
T ss_dssp CCTTCEEEEESCCCTTSBCHHH--HHHHHHSCTTCEEEEEESSCC--------BC-----------------SSSEEEES
T ss_pred CCCCCEEEEeCCCCCCCCCcHH--HHHHHHcCCCCEEEEEECCCC--------CC-----------------CCEEEEEC
Confidence 346789999999 4465 333333212379999999998 11 4667 999
Q ss_pred CccccCCCCCCccEEEEccccc--------cCC-hhHHHHHHHHHHHccCCC-EEEEEecCC
Q 002218 784 SITVFDSRLHGFDIGTCLEVIE--------HME-EDEASQFGNIVLSSFRPR-ILIVSTPNY 835 (952)
Q Consensus 784 Da~dLpf~d~sFDVVVcieVIE--------HL~-dD~l~~L~eeI~RvLKPG-~LIISTPN~ 835 (952)
|+.++++. +.||+|++....+ |.. .+....+.+++.++|||| .+++.+...
T Consensus 114 D~~~~~~~-~~fD~Vvsn~~~~~~g~~~~d~~~~~~l~~~~l~~a~r~LkpGG~~v~~~~~~ 174 (290)
T 2xyq_A 114 DCATVHTA-NKWDLIISDMYDPRTKHVTKENDSKEGFFTYLCGFIKQKLALGGSIAVKITEH 174 (290)
T ss_dssp CGGGCCCS-SCEEEEEECCCCCC---CCSCCCCCCTHHHHHHHHHHHHEEEEEEEEEEECSS
T ss_pred ccccCCcc-CcccEEEEcCCccccccccccccchHHHHHHHHHHHHHhcCCCcEEEEEEecc
Confidence 99987754 6899999964321 111 122234556799999999 777756543
No 267
>1qyr_A KSGA, high level kasugamycin resistance protein, S-adenosylMet; adenosine dimethyltransferase, rRNA modification, transferase, translation; 2.10A {Escherichia coli} SCOP: c.66.1.24 PDB: 4adv_V 3tpz_A
Probab=98.19 E-value=1.2e-06 Score=92.11 Aligned_cols=87 Identities=8% Similarity=0.054 Sum_probs=62.9
Q ss_pred HHHHHHHhhcCCCCEEEEEcCccchHHHHHhcCCCCCce--EEEEeCChHHHHHHHHHHhhhhhcccccCCCCCCCccEE
Q 002218 702 VEYALQHIKESCATTLVDFGCGSGSLLDSLLDYPTALEK--IVGVDISQKSLSRAAKIIHSKLSKKLDAAVPCTDVKSAV 779 (952)
Q Consensus 702 ~efVldlL~~~k~krVLDIGCGeG~ll~~LAr~g~~~~q--VVGVDISeemLe~ArkrLsa~la~~~~~l~Pr~~~~nVt 779 (952)
.+.+++.+...++.+|||||||+|.++. +++ + .+ |+|||+|+.|++.+++++. ...+++
T Consensus 10 ~~~iv~~~~~~~~~~VLEIG~G~G~lt~-l~~-~---~~~~v~avEid~~~~~~a~~~~~--------------~~~~v~ 70 (252)
T 1qyr_A 10 IDSIVSAINPQKGQAMVEIGPGLAALTE-PVG-E---RLDQLTVIELDRDLAARLQTHPF--------------LGPKLT 70 (252)
T ss_dssp HHHHHHHHCCCTTCCEEEECCTTTTTHH-HHH-T---TCSCEEEECCCHHHHHHHHTCTT--------------TGGGEE
T ss_pred HHHHHHhcCCCCcCEEEEECCCCcHHHH-hhh-C---CCCeEEEEECCHHHHHHHHHHhc--------------cCCceE
Confidence 3456666666677899999999999999 765 4 45 9999999999999976542 124899
Q ss_pred EEEcCccccCCCCC-----CccEEEEccccccCC
Q 002218 780 LFDGSITVFDSRLH-----GFDIGTCLEVIEHME 808 (952)
Q Consensus 780 f~qGDa~dLpf~d~-----sFDVVVcieVIEHL~ 808 (952)
++++|+.++++... ..|.|+++ .-.++.
T Consensus 71 ~i~~D~~~~~~~~~~~~~~~~~~vvsN-lPY~i~ 103 (252)
T 1qyr_A 71 IYQQDAMTFNFGELAEKMGQPLRVFGN-LPYNIS 103 (252)
T ss_dssp EECSCGGGCCHHHHHHHHTSCEEEEEE-CCTTTH
T ss_pred EEECchhhCCHHHhhcccCCceEEEEC-CCCCcc
Confidence 99999998775421 23455554 334444
No 268
>3ll7_A Putative methyltransferase; methytransferase, structural genomics, MCSG, PSI-2, protein initiative; HET: MSE; 1.80A {Porphyromonas gingivalis}
Probab=98.09 E-value=2.3e-06 Score=96.41 Aligned_cols=74 Identities=16% Similarity=0.157 Sum_probs=61.0
Q ss_pred CCEEEEEcCccchHHHHHhcCCCCCceEEEEeCChHHHHHHHHHHhhhhhcccccCCCCCCCccEEEEEcCcccc-CC-C
Q 002218 714 ATTLVDFGCGSGSLLDSLLDYPTALEKIVGVDISQKSLSRAAKIIHSKLSKKLDAAVPCTDVKSAVLFDGSITVF-DS-R 791 (952)
Q Consensus 714 ~krVLDIGCGeG~ll~~LAr~g~~~~qVVGVDISeemLe~ArkrLsa~la~~~~~l~Pr~~~~nVtf~qGDa~dL-pf-~ 791 (952)
+.+|||+|||+|..+..|++.+ .+|+|||+|+.+++.|++++.... .+..+++++++|+.+. +. .
T Consensus 94 g~~VLDLgcG~G~~al~LA~~g---~~V~~VD~s~~~l~~Ar~N~~~~~----------~gl~~i~~i~~Da~~~L~~~~ 160 (410)
T 3ll7_A 94 GTKVVDLTGGLGIDFIALMSKA---SQGIYIERNDETAVAARHNIPLLL----------NEGKDVNILTGDFKEYLPLIK 160 (410)
T ss_dssp TCEEEESSCSSSHHHHHHHTTC---SEEEEEESCHHHHHHHHHHHHHHS----------CTTCEEEEEESCGGGSHHHHH
T ss_pred CCEEEEeCCCchHHHHHHHhcC---CEEEEEECCHHHHHHHHHhHHHhc----------cCCCcEEEEECcHHHhhhhcc
Confidence 7899999999999999999887 799999999999999998875310 0235899999999874 32 2
Q ss_pred CCCccEEEE
Q 002218 792 LHGFDIGTC 800 (952)
Q Consensus 792 d~sFDVVVc 800 (952)
...||+|++
T Consensus 161 ~~~fDvV~l 169 (410)
T 3ll7_A 161 TFHPDYIYV 169 (410)
T ss_dssp HHCCSEEEE
T ss_pred CCCceEEEE
Confidence 358999998
No 269
>2qfm_A Spermine synthase; spermidine aminopropyltransferase, SPMSY, structural genomics, structural genomics consortium, SGC; HET: SPD MTA; 1.80A {Homo sapiens} PDB: 3c6k_A* 3c6m_A*
Probab=98.07 E-value=6.3e-06 Score=91.70 Aligned_cols=113 Identities=10% Similarity=0.103 Sum_probs=74.7
Q ss_pred CCCEEEEEcCccchHHHHHhcCCCCCceEEEEeCChHHHHHHHHHHhhhhhcccccCCCCCCCccEEEEEcCccccCC--
Q 002218 713 CATTLVDFGCGSGSLLDSLLDYPTALEKIVGVDISQKSLSRAAKIIHSKLSKKLDAAVPCTDVKSAVLFDGSITVFDS-- 790 (952)
Q Consensus 713 k~krVLDIGCGeG~ll~~LAr~g~~~~qVVGVDISeemLe~ArkrLsa~la~~~~~l~Pr~~~~nVtf~qGDa~dLpf-- 790 (952)
.+++|||||||+|.+++.+++++. .+|++||+++.+++.|++.+....... ...| ..++++++.+|+.++..
T Consensus 188 ~pkrVL~IGgG~G~~arellk~~~--~~Vt~VEID~~vie~Ar~~~~~l~~~~--l~dp--~~~rv~vi~~Da~~~L~~~ 261 (364)
T 2qfm_A 188 TGKDVLILGGGDGGILCEIVKLKP--KMVTMVEIDQMVIDGCKKYMRKTCGDV--LDNL--KGDCYQVLIEDCIPVLKRY 261 (364)
T ss_dssp TTCEEEEEECTTCHHHHHHHTTCC--SEEEEEESCHHHHHHHHHHCCC----C--CSSS--EETTEEEEESCHHHHHHHH
T ss_pred CCCEEEEEECChhHHHHHHHHCCC--CEEEEEECCHHHHHHHHHHHHHhcccc--cccc--CCCcEEEEECcHHHHHHhh
Confidence 578999999999999999998873 899999999999999998753210000 0000 01279999999987543
Q ss_pred --CCCCccEEEEccccccCC--hh--HHHHHHHHH----HHccCCC-EEEEE
Q 002218 791 --RLHGFDIGTCLEVIEHME--ED--EASQFGNIV----LSSFRPR-ILIVS 831 (952)
Q Consensus 791 --~d~sFDVVVcieVIEHL~--dD--~l~~L~eeI----~RvLKPG-~LIIS 831 (952)
..+.||+|++--.-..+. +. ....|.+.+ .++|+|| ++++.
T Consensus 262 ~~~~~~fDvII~D~~d~P~~~~p~~L~t~eFy~~~~~~~~~~L~pgGilv~q 313 (364)
T 2qfm_A 262 AKEGREFDYVINDLTAVPISTSPEEDSTWEFLRLILDLSMKVLKQDGKYFTQ 313 (364)
T ss_dssp HHHTCCEEEEEEECCSSCCCCC----CHHHHHHHHHHHHHHTEEEEEEEEEE
T ss_pred hccCCCceEEEECCCCcccCcCchhhhHHHHHHHHHHHHHhhCCCCcEEEEE
Confidence 357899999843210110 10 012344445 8999999 44443
No 270
>2ar0_A M.ecoki, type I restriction enzyme ecoki M protein; structural genomics, protein structure initiative, nysgxrc; 2.80A {Escherichia coli} SCOP: c.66.1.45 PDB: 2y7c_B 2y7h_B*
Probab=97.98 E-value=8.3e-06 Score=94.56 Aligned_cols=130 Identities=14% Similarity=0.167 Sum_probs=86.3
Q ss_pred hhcCCchhHHHHHHHHHHHhhcCCCCEEEEEcCccchHHHHHhcC----CCC-------------CceEEEEeCChHHHH
Q 002218 690 QALFSPPLSKQRVEYALQHIKESCATTLVDFGCGSGSLLDSLLDY----PTA-------------LEKIVGVDISQKSLS 752 (952)
Q Consensus 690 ~~~F~PPL~~QR~efVldlL~~~k~krVLDIGCGeG~ll~~LAr~----g~~-------------~~qVVGVDISeemLe 752 (952)
..+|.|.-- .+++++.+.+..+.+|+|.|||+|.++..+++. ... ..+++|+|+++.+++
T Consensus 149 G~fyTP~~i---v~~mv~~l~p~~~~~VlDPaCGSG~fLi~a~~~l~~~~~~~~~~~~~~~~~~~~~~i~GiEid~~~~~ 225 (541)
T 2ar0_A 149 GQYFTPRPL---IKTIIHLLKPQPREVVQDPAAGTAGFLIEADRYVKSQTNDLDDLDGDTQDFQIHRAFIGLELVPGTRR 225 (541)
T ss_dssp -CCCCCHHH---HHHHHHHHCCCTTCCEEETTCTTTHHHHHHHHHHHTTTTTTTTSCHHHHHHHHHTSEEEEESCHHHHH
T ss_pred CeeeCCHHH---HHHHHHHhccCCCCeEecCCcccchHHHHHHHHHHHhhcccccCCHHHHhhhhcceEEEEcCCHHHHH
Confidence 344555422 245667777667789999999999999776643 100 137999999999999
Q ss_pred HHHHHHhhhhhcccccCCCCCCCc-----cEEEEEcCccccC-CCCCCccEEEEccccccCC------------hhHHHH
Q 002218 753 RAAKIIHSKLSKKLDAAVPCTDVK-----SAVLFDGSITVFD-SRLHGFDIGTCLEVIEHME------------EDEASQ 814 (952)
Q Consensus 753 ~ArkrLsa~la~~~~~l~Pr~~~~-----nVtf~qGDa~dLp-f~d~sFDVVVcieVIEHL~------------dD~l~~ 814 (952)
.|+.++.- .+.. ++.+.++|....+ .....||+|++.=-+.... ......
T Consensus 226 lA~~nl~l------------~gi~~~~~~~~~I~~gDtL~~~~~~~~~fD~Vv~NPPf~~~~~~~~~~~~~~~~~~~~~~ 293 (541)
T 2ar0_A 226 LALMNCLL------------HDIEGNLDHGGAIRLGNTLGSDGENLPKAHIVATNPPFGSAAGTNITRTFVHPTSNKQLC 293 (541)
T ss_dssp HHHHHHHT------------TTCCCBGGGTBSEEESCTTSHHHHTSCCEEEEEECCCCTTCSSCCCCSCCSSCCSCHHHH
T ss_pred HHHHHHHH------------hCCCccccccCCeEeCCCcccccccccCCeEEEECCCcccccchhhHhhcCCCCCchHHH
Confidence 99876531 1122 2678899986654 2456899999953322211 111235
Q ss_pred HHHHHHHccCCC-EEEEEecC
Q 002218 815 FGNIVLSSFRPR-ILIVSTPN 834 (952)
Q Consensus 815 L~eeI~RvLKPG-~LIISTPN 834 (952)
|...+.+.|+|| .+.+.+|+
T Consensus 294 Fl~~~l~~Lk~gGr~a~V~p~ 314 (541)
T 2ar0_A 294 FMQHIIETLHPGGRAAVVVPD 314 (541)
T ss_dssp HHHHHHHHEEEEEEEEEEEEH
T ss_pred HHHHHHHHhCCCCEEEEEecC
Confidence 667799999998 77777776
No 271
>3axs_A Probable N(2),N(2)-dimethylguanosine tRNA methylt TRM1; structural genomics, riken structural genomics/proteomics in RSGI; HET: SFG; 2.16A {Aquifex aeolicus} PDB: 3axt_A*
Probab=97.93 E-value=2.3e-05 Score=87.90 Aligned_cols=103 Identities=18% Similarity=0.102 Sum_probs=74.1
Q ss_pred CCCCEEEEEcCccchHHHHHhcCCCCCceEEEEeCChHHHHHHHHHHhhhhhcccccCCCCCCCcc--EEEEEcCccccC
Q 002218 712 SCATTLVDFGCGSGSLLDSLLDYPTALEKIVGVDISQKSLSRAAKIIHSKLSKKLDAAVPCTDVKS--AVLFDGSITVFD 789 (952)
Q Consensus 712 ~k~krVLDIGCGeG~ll~~LAr~g~~~~qVVGVDISeemLe~ArkrLsa~la~~~~~l~Pr~~~~n--Vtf~qGDa~dLp 789 (952)
.++.+|||++||+|.++..++.......+|+++|+++.+++.+++++.. .+..+ ++++++|+.++.
T Consensus 51 ~~g~~VLDlfaGtG~~sl~aa~~~~ga~~V~avDi~~~av~~~~~N~~~------------Ngl~~~~v~v~~~Da~~~l 118 (392)
T 3axs_A 51 GRPVKVADPLSASGIRAIRFLLETSCVEKAYANDISSKAIEIMKENFKL------------NNIPEDRYEIHGMEANFFL 118 (392)
T ss_dssp CSCEEEEESSCTTSHHHHHHHHHCSCEEEEEEECSCHHHHHHHHHHHHH------------TTCCGGGEEEECSCHHHHH
T ss_pred CCCCEEEECCCcccHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHH------------hCCCCceEEEEeCCHHHHH
Confidence 4578999999999999998887421126899999999999999988753 23333 999999997653
Q ss_pred C--CCCCccEEEEccccccCChhHHHHHHHHHHHccCCC-EEEEEe
Q 002218 790 S--RLHGFDIGTCLEVIEHMEEDEASQFGNIVLSSFRPR-ILIVST 832 (952)
Q Consensus 790 f--~d~sFDVVVcieVIEHL~dD~l~~L~eeI~RvLKPG-~LIIST 832 (952)
. ....||+|++-= .... ..+.+.+.+.|+|| .++++.
T Consensus 119 ~~~~~~~fD~V~lDP--~g~~----~~~l~~a~~~Lk~gGll~~t~ 158 (392)
T 3axs_A 119 RKEWGFGFDYVDLDP--FGTP----VPFIESVALSMKRGGILSLTA 158 (392)
T ss_dssp HSCCSSCEEEEEECC--SSCC----HHHHHHHHHHEEEEEEEEEEE
T ss_pred HHhhCCCCcEEEECC--CcCH----HHHHHHHHHHhCCCCEEEEEe
Confidence 2 245799998743 1111 23555688899999 444443
No 272
>2oyr_A UPF0341 protein YHIQ; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; HET: SAH; 2.00A {Shigella flexneri 2A} SCOP: c.66.1.55 PDB: 2pgx_A 2pkw_A
Probab=97.85 E-value=2.2e-05 Score=83.33 Aligned_cols=96 Identities=9% Similarity=-0.034 Sum_probs=67.0
Q ss_pred HHHHHHhhcCCC--CEEEEEcCccchHHHHHhcCCCCCceEEEEeCChHHHHHHHHHHhhhhhcccccCCCCCC-C-ccE
Q 002218 703 EYALQHIKESCA--TTLVDFGCGSGSLLDSLLDYPTALEKIVGVDISQKSLSRAAKIIHSKLSKKLDAAVPCTD-V-KSA 778 (952)
Q Consensus 703 efVldlL~~~k~--krVLDIGCGeG~ll~~LAr~g~~~~qVVGVDISeemLe~ArkrLsa~la~~~~~l~Pr~~-~-~nV 778 (952)
+.+.+.+...++ .+|||+|||.|..+..++..+ .+|+|||+++.+.+.+++.+....... ...+ . .++
T Consensus 76 e~l~~al~l~~g~~~~VLDl~~G~G~dal~lA~~g---~~V~~vE~~~~~~~l~~~~l~~a~~~~-----~~~~~l~~~i 147 (258)
T 2oyr_A 76 EAVAKAVGIKGDYLPDVVDATAGLGRDAFVLASVG---CRVRMLERNPVVAALLDDGLARGYADA-----EIGGWLQERL 147 (258)
T ss_dssp SHHHHHTTCBTTBCCCEEETTCTTCHHHHHHHHHT---CCEEEEECCHHHHHHHHHHHHHHHHCT-----TTHHHHHHHE
T ss_pred HHHHHHhcccCCCCCEEEEcCCcCCHHHHHHHHcC---CEEEEEECCHHHHHHHHHHHHHHHhhH-----hhhhhhhcCE
Confidence 445666655556 899999999999999999887 689999999988777765543211000 0011 1 479
Q ss_pred EEEEcCcccc-CCCCCCccEEEEcccccc
Q 002218 779 VLFDGSITVF-DSRLHGFDIGTCLEVIEH 806 (952)
Q Consensus 779 tf~qGDa~dL-pf~d~sFDVVVcieVIEH 806 (952)
+++++|+.++ +.....||+|++-=...+
T Consensus 148 ~~~~~D~~~~L~~~~~~fDvV~lDP~y~~ 176 (258)
T 2oyr_A 148 QLIHASSLTALTDITPRPQVVYLDPMFPH 176 (258)
T ss_dssp EEEESCHHHHSTTCSSCCSEEEECCCCCC
T ss_pred EEEECCHHHHHHhCcccCCEEEEcCCCCC
Confidence 9999999874 322236999998655554
No 273
>3lkd_A Type I restriction-modification system methyltransferase subunit; Q5M500_STRT2, STU0711, NESG, SUR80, structural genomics, PSI-2; 2.25A {Streptococcus thermophilus}
Probab=97.81 E-value=0.00012 Score=85.23 Aligned_cols=122 Identities=15% Similarity=0.095 Sum_probs=83.2
Q ss_pred HHHHHHhh----cCCCCEEEEEcCccchHHHHHhcCC--CCCceEEEEeCChHHHHHHHHHHhhhhhcccccCCCCCCCc
Q 002218 703 EYALQHIK----ESCATTLVDFGCGSGSLLDSLLDYP--TALEKIVGVDISQKSLSRAAKIIHSKLSKKLDAAVPCTDVK 776 (952)
Q Consensus 703 efVldlL~----~~k~krVLDIGCGeG~ll~~LAr~g--~~~~qVVGVDISeemLe~ArkrLsa~la~~~~~l~Pr~~~~ 776 (952)
+++++++. +..+.+|+|.+||+|.++..++++. ....+++|+|+++.++..|+.++.-. .....
T Consensus 207 ~lmv~ll~~~~~~~~~~~VlDPaCGSG~fLi~a~~~l~~~~~~~i~G~Eid~~~~~lA~~Nl~l~----------gi~~~ 276 (542)
T 3lkd_A 207 KLMTQIAFLGREDKQGFTLYDATMGSGSLLLNAKRYSRQPQTVVYFGQELNTSTYNLARMNMILH----------GVPIE 276 (542)
T ss_dssp HHHHHHHHTTCTTCTTCEEEETTCTTSTTGGGHHHHCSCTTTCEEEEEESCHHHHHHHHHHHHHT----------TCCGG
T ss_pred HHHHHHHhcccCCCCCCEEeecccchhHHHHHHHHHHHhccCceEEEEECcHHHHHHHHHHHHHc----------CCCcC
Confidence 35555555 4467799999999999998776542 01368999999999999998765311 01124
Q ss_pred cEEEEEcCcccc--C-CCCCCccEEEEcc--cccc-----------------CCh---hHHHHHHHHHHHccC-CC-EEE
Q 002218 777 SAVLFDGSITVF--D-SRLHGFDIGTCLE--VIEH-----------------MEE---DEASQFGNIVLSSFR-PR-ILI 829 (952)
Q Consensus 777 nVtf~qGDa~dL--p-f~d~sFDVVVcie--VIEH-----------------L~d---D~l~~L~eeI~RvLK-PG-~LI 829 (952)
++.+.++|.... + .....||+|++.= ...+ +++ .. -.|...+.+.|+ || .+.
T Consensus 277 ~~~I~~gDtL~~d~p~~~~~~fD~IvaNPPf~~~~~~~~~~~~d~rf~~~G~~~~~s~~~-~~Fl~~~l~~Lk~~gGr~a 355 (542)
T 3lkd_A 277 NQFLHNADTLDEDWPTQEPTNFDGVLMNPPYSAKWSASSGFMDDPRFSPFGKLAPKSKAD-FAFLLHGYYHLKQDNGVMA 355 (542)
T ss_dssp GEEEEESCTTTSCSCCSSCCCBSEEEECCCTTCCCCCCGGGGGSTTTGGGSSCCCTTCCH-HHHHHHHHHTBCTTTCEEE
T ss_pred ccceEecceecccccccccccccEEEecCCcCCccccchhhhhhhhhhhhhhcCCCchhh-HHHHHHHHHHhCCCceeEE
Confidence 688999998766 3 3467899999851 1000 110 11 246678999999 87 777
Q ss_pred EEecCC
Q 002218 830 VSTPNY 835 (952)
Q Consensus 830 ISTPN~ 835 (952)
+.+|+.
T Consensus 356 ~VlP~g 361 (542)
T 3lkd_A 356 IVLPHG 361 (542)
T ss_dssp EEEETH
T ss_pred EEecch
Confidence 778863
No 274
>3o4f_A Spermidine synthase; aminopropyltransferase, polyamine synthase, rossmann fold, P biosynthesis, spermidine biosynthesis, transferase; 2.90A {Escherichia coli}
Probab=97.68 E-value=0.00019 Score=77.86 Aligned_cols=108 Identities=19% Similarity=0.133 Sum_probs=79.4
Q ss_pred CCCCEEEEEcCccchHHHHHhcCCCCCceEEEEeCChHHHHHHHHHHhhhhhcccccCCCCCCCccEEEEEcCccccC-C
Q 002218 712 SCATTLVDFGCGSGSLLDSLLDYPTALEKIVGVDISQKSLSRAAKIIHSKLSKKLDAAVPCTDVKSAVLFDGSITVFD-S 790 (952)
Q Consensus 712 ~k~krVLDIGCGeG~ll~~LAr~g~~~~qVVGVDISeemLe~ArkrLsa~la~~~~~l~Pr~~~~nVtf~qGDa~dLp-f 790 (952)
..+++||-||-|.|..++.++++. +..+|+.|||++..++.|++.+...... ....++++++.+|+..+- .
T Consensus 82 p~pk~VLIiGgGdG~~~revlk~~-~v~~v~~VEID~~Vv~~a~~~lp~~~~~-------~~~dpRv~v~~~Dg~~~l~~ 153 (294)
T 3o4f_A 82 GHAKHVLIIGGGDGAMLREVTRHK-NVESITMVEIDAGVVSFCRQYLPNHNAG-------SYDDPRFKLVIDDGVNFVNQ 153 (294)
T ss_dssp SCCCEEEEESCTTSHHHHHHHTCT-TCCEEEEEESCHHHHHHHHHHCHHHHTT-------GGGCTTEEEEESCTTTTTSC
T ss_pred CCCCeEEEECCCchHHHHHHHHcC-CcceEEEEcCCHHHHHHHHhcCcccccc-------ccCCCcEEEEechHHHHHhh
Confidence 467899999999999999999986 5689999999999999998765422111 113468999999998753 3
Q ss_pred CCCCccEEEEcc-----ccccCChhHHHHHHHHHHHccCCCEEEE
Q 002218 791 RLHGFDIGTCLE-----VIEHMEEDEASQFGNIVLSSFRPRILIV 830 (952)
Q Consensus 791 ~d~sFDVVVcie-----VIEHL~dD~l~~L~eeI~RvLKPG~LII 830 (952)
..+.||+|+.-- .-+++.. ..|.+.+.+.|+||++++
T Consensus 154 ~~~~yDvIi~D~~dp~~~~~~L~t---~eFy~~~~~~L~p~Gv~v 195 (294)
T 3o4f_A 154 TSQTFDVIISDCTDPIGPGESLFT---SAFYEGCKRCLNPGGIFV 195 (294)
T ss_dssp SSCCEEEEEESCCCCCCTTCCSSC---CHHHHHHHHTEEEEEEEE
T ss_pred ccccCCEEEEeCCCcCCCchhhcC---HHHHHHHHHHhCCCCEEE
Confidence 457899998632 1223331 245567999999994444
No 275
>3ua3_A Protein arginine N-methyltransferase 5; TIM-barrel, rossmann fold, beta-barrel, symmetric arginine dimethylase, SAM binding; HET: SAH; 3.00A {Caenorhabditis elegans} PDB: 3ua4_A
Probab=97.63 E-value=4.6e-05 Score=90.95 Aligned_cols=104 Identities=11% Similarity=0.115 Sum_probs=67.4
Q ss_pred CCEEEEEcCccchHHHHHhcCC---C---------CCceEEEEeCChHHHHHHHHHHhhhhhcccccCCCCCCCccEEEE
Q 002218 714 ATTLVDFGCGSGSLLDSLLDYP---T---------ALEKIVGVDISQKSLSRAAKIIHSKLSKKLDAAVPCTDVKSAVLF 781 (952)
Q Consensus 714 ~krVLDIGCGeG~ll~~LAr~g---~---------~~~qVVGVDISeemLe~ArkrLsa~la~~~~~l~Pr~~~~nVtf~ 781 (952)
.+.|||||||+|-+....++.+ + ...+|++||.++.++...+.+... +....|+++
T Consensus 410 ~~VVldVGaGtGpLs~~al~A~~~a~~~~~~~~~~~~~kVyAVEknp~A~~~l~~~~~N------------g~~d~VtVI 477 (745)
T 3ua3_A 410 TVVIYLLGGGRGPIGTKILKSEREYNNTFRQGQESLKVKLYIVEKNPNAIVTLKYMNVR------------TWKRRVTII 477 (745)
T ss_dssp EEEEEEESCTTCHHHHHHHHHHHHHHHHHSTTSCCCEEEEEEEECCHHHHHHHHHHHHH------------TTTTCSEEE
T ss_pred CcEEEEECCCCCHHHHHHHHHHHHhCccccccccccccEEEEEeCChHHHHHHHHHHhc------------CCCCeEEEE
Confidence 4689999999999964321111 0 124999999999777665544322 122469999
Q ss_pred EcCccccCCC-----CCCccEEEEccccccCC-hhHHHHHHHHHHHccCCCEEEE
Q 002218 782 DGSITVFDSR-----LHGFDIGTCLEVIEHME-EDEASQFGNIVLSSFRPRILIV 830 (952)
Q Consensus 782 qGDa~dLpf~-----d~sFDVVVcieVIEHL~-dD~l~~L~eeI~RvLKPG~LII 830 (952)
++|++++..+ ..++|+||+=.+ -.+. .+........+.++||||.++|
T Consensus 478 ~gd~eev~lp~~~~~~ekVDIIVSElm-Gsfl~nEL~pe~Ld~v~r~Lkp~Gi~i 531 (745)
T 3ua3_A 478 ESDMRSLPGIAKDRGFEQPDIIVSELL-GSFGDNELSPECLDGVTGFLKPTTISI 531 (745)
T ss_dssp ESCGGGHHHHHHHTTCCCCSEEEECCC-BTTBGGGSHHHHHHTTGGGSCTTCEEE
T ss_pred eCchhhcccccccCCCCcccEEEEecc-ccccchhccHHHHHHHHHhCCCCcEEE
Confidence 9999998653 578999998433 3322 2212223345678999985544
No 276
>4gqb_A Protein arginine N-methyltransferase 5; TIM barrel, beta-propeller, methyltransferase, methylation, transferase-protein binding complex; HET: 0XU; 2.06A {Homo sapiens} PDB: 4g56_A*
Probab=97.60 E-value=8.1e-05 Score=88.18 Aligned_cols=104 Identities=10% Similarity=0.067 Sum_probs=65.8
Q ss_pred CCCEEEEEcCccchHHHHHh---cCCCCCceEEEEeCChHHHHHHHHHHhhhhhcccccCCCCCCCccEEEEEcCccccC
Q 002218 713 CATTLVDFGCGSGSLLDSLL---DYPTALEKIVGVDISQKSLSRAAKIIHSKLSKKLDAAVPCTDVKSAVLFDGSITVFD 789 (952)
Q Consensus 713 k~krVLDIGCGeG~ll~~LA---r~g~~~~qVVGVDISeemLe~ArkrLsa~la~~~~~l~Pr~~~~nVtf~qGDa~dLp 789 (952)
+...|||||||+|-+....+ +.++...+|++||.++ +...|++..... +....|++++||++++.
T Consensus 357 ~~~vVldVGaGrGpLv~~al~A~a~~~~~vkVyAVEknp-~A~~a~~~v~~N-----------~~~dkVtVI~gd~eev~ 424 (637)
T 4gqb_A 357 NVQVLMVLGAGRGPLVNASLRAAKQADRRIKLYAVEKNP-NAVVTLENWQFE-----------EWGSQVTVVSSDMREWV 424 (637)
T ss_dssp CEEEEEEESCTTSHHHHHHHHHHHHTTCEEEEEEEESCH-HHHHHHHHHHHH-----------TTGGGEEEEESCTTTCC
T ss_pred CCcEEEEECCCCcHHHHHHHHHHHhcCCCcEEEEEECCH-HHHHHHHHHHhc-----------cCCCeEEEEeCcceecc
Confidence 34579999999999953333 3332234799999997 445565554321 23457999999999987
Q ss_pred CCCCCccEEEEccccccCC-hhHHHHHHHHHHHccCCCEEEE
Q 002218 790 SRLHGFDIGTCLEVIEHME-EDEASQFGNIVLSSFRPRILIV 830 (952)
Q Consensus 790 f~d~sFDVVVcieVIEHL~-dD~l~~L~eeI~RvLKPG~LII 830 (952)
.+ .++|+||+=. +..+- .+-+........++||||.++|
T Consensus 425 LP-EKVDIIVSEw-MG~fLl~E~mlevL~Ardr~LKPgGimi 464 (637)
T 4gqb_A 425 AP-EKADIIVSEL-LGSFADNELSPECLDGAQHFLKDDGVSI 464 (637)
T ss_dssp CS-SCEEEEECCC-CBTTBGGGCHHHHHHHHGGGEEEEEEEE
T ss_pred CC-cccCEEEEEc-CcccccccCCHHHHHHHHHhcCCCcEEc
Confidence 54 6899999822 21111 1111122234678999996655
No 277
>3khk_A Type I restriction-modification system methylation subunit; structural genomics, PSI-2, protein structure initiative; 2.55A {Methanosarcina mazei}
Probab=97.59 E-value=7.6e-05 Score=86.78 Aligned_cols=121 Identities=11% Similarity=-0.025 Sum_probs=78.7
Q ss_pred HHHHHHhhcCCCCEEEEEcCccchHHHHHhcCCC--------------CCceEEEEeCChHHHHHHHHHHhhhhhccccc
Q 002218 703 EYALQHIKESCATTLVDFGCGSGSLLDSLLDYPT--------------ALEKIVGVDISQKSLSRAAKIIHSKLSKKLDA 768 (952)
Q Consensus 703 efVldlL~~~k~krVLDIGCGeG~ll~~LAr~g~--------------~~~qVVGVDISeemLe~ArkrLsa~la~~~~~ 768 (952)
+++++++.... .+|||.+||+|.++..++++.. ...+++|+|+++.++..|+.++.-.
T Consensus 235 ~lmv~ll~p~~-~~VlDPaCGSG~fLi~a~~~l~~~~~~~~~~~~~~~~~~~i~G~Eid~~~~~lA~~Nl~l~------- 306 (544)
T 3khk_A 235 TLIVEMLEPYK-GRVYDPAMGSGGFFVSSDKFIEKHANVKHYNASEQKKQISVYGQESNPTTWKLAAMNMVIR------- 306 (544)
T ss_dssp HHHHHHHCCCS-EEEEESSCTTCHHHHHHHHHHHHHHHHHTSCHHHHGGGEEEEECCCCHHHHHHHHHHHHHT-------
T ss_pred HHHHHHHhcCC-CeEeCcccCcCcHHHHHHHHHHHhccccccchHHHhhhceEEEEeCCHHHHHHHHHHHHHh-------
Confidence 45666665544 3999999999999977643210 0258999999999999998765321
Q ss_pred CCCCCCCccEEEEEcCccccC-CCCCCccEEEEcc--ccc-c----------------------CChh--HHHHHHHHHH
Q 002218 769 AVPCTDVKSAVLFDGSITVFD-SRLHGFDIGTCLE--VIE-H----------------------MEED--EASQFGNIVL 820 (952)
Q Consensus 769 l~Pr~~~~nVtf~qGDa~dLp-f~d~sFDVVVcie--VIE-H----------------------L~dD--~l~~L~eeI~ 820 (952)
+...++.+.++|....+ .....||+|++.= ... + +++. ..-.|...+.
T Consensus 307 ----gi~~~i~i~~gDtL~~~~~~~~~fD~Iv~NPPf~~~~~~~~~~~~d~r~~~g~~~~~~~~~~~~~~~~~~Fl~~~l 382 (544)
T 3khk_A 307 ----GIDFNFGKKNADSFLDDQHPDLRADFVMTNPPFNMKDWWHEKLADDPRWTINTNGEKRILTPPTGNANFAWMLHML 382 (544)
T ss_dssp ----TCCCBCCSSSCCTTTSCSCTTCCEEEEEECCCSSCCSCCCGGGTTCGGGEECCC--CEECCCCTTCTHHHHHHHHH
T ss_pred ----CCCcccceeccchhcCcccccccccEEEECCCcCCccccchhhhhhhhhhcCcccccccccCCCcchhHHHHHHHH
Confidence 11123444778876544 3457899999942 110 0 1110 1115667799
Q ss_pred HccCCC-EEEEEecCC
Q 002218 821 SSFRPR-ILIVSTPNY 835 (952)
Q Consensus 821 RvLKPG-~LIISTPN~ 835 (952)
+.|+|| .+.+.+|+.
T Consensus 383 ~~Lk~gGr~aiVlP~g 398 (544)
T 3khk_A 383 YHLAPTGSMALLLANG 398 (544)
T ss_dssp HTEEEEEEEEEEEETH
T ss_pred HHhccCceEEEEecch
Confidence 999998 777888873
No 278
>3s1s_A Restriction endonuclease bpusi; PD--(D/E)XK catalytic motif, gamma-N6M-adenosine methyltrans S-adenosyl-methionine binding, hydrolase; HET: SAH; 2.35A {Bacillus pumilus}
Probab=97.54 E-value=0.00056 Score=82.93 Aligned_cols=117 Identities=11% Similarity=0.077 Sum_probs=75.4
Q ss_pred CCCEEEEEcCccchHHHHHhcCCC--CCceEEEEeCChHHHHHHHHHHhhhhhcccccCCCCCCCccEEEEEcCccccC-
Q 002218 713 CATTLVDFGCGSGSLLDSLLDYPT--ALEKIVGVDISQKSLSRAAKIIHSKLSKKLDAAVPCTDVKSAVLFDGSITVFD- 789 (952)
Q Consensus 713 k~krVLDIGCGeG~ll~~LAr~g~--~~~qVVGVDISeemLe~ArkrLsa~la~~~~~l~Pr~~~~nVtf~qGDa~dLp- 789 (952)
.+.+|||.|||+|.++..+++..+ ...+++|+|+++.+++.|+.++....... ..+.....+...|+...+
T Consensus 321 ~g~rVLDPaCGSG~FLIaaA~~l~ei~~~~IyGvEIDp~Al~LAK~RlNL~lN~L------lhGi~~~~I~~dD~L~~~~ 394 (878)
T 3s1s_A 321 EDEVISDPAAGSGNLLATVSAGFNNVMPRQIWANDIETLFLELLSIRLGLLFPQL------VSSNNAPTITGEDVCSLNP 394 (878)
T ss_dssp TTCEEEETTCTTSHHHHHHHHTSTTCCGGGEEEECSCGGGHHHHHHHHHTTSTTT------CBTTBCCEEECCCGGGCCG
T ss_pred CCCEEEECCCCccHHHHHHHHHhcccCCCeEEEEECCHHHHHHHHHHHHHHHhhh------hcCCCcceEEecchhcccc
Confidence 467999999999999999887642 12579999999999999954432111000 012223455666666533
Q ss_pred CCCCCccEEEEcccc--cc-CCh------------------------hHHHHHHHHHHHccCCC-EEEEEecCC
Q 002218 790 SRLHGFDIGTCLEVI--EH-MEE------------------------DEASQFGNIVLSSFRPR-ILIVSTPNY 835 (952)
Q Consensus 790 f~d~sFDVVVcieVI--EH-L~d------------------------D~l~~L~eeI~RvLKPG-~LIISTPN~ 835 (952)
.....||+|++.==. .. ... +....|.+.+.+.|+|| .+.+.+|+.
T Consensus 395 ~~~~kFDVVIgNPPYg~~~~~~~e~kd~~~r~~~g~p~~p~s~~G~~DLy~aFIe~Al~lLKpGGrLAfIlP~s 468 (878)
T 3s1s_A 395 EDFANVSVVVMNPPYVSGVTDPAIKRKFAHKIIQLTGNRPQTLFGQIGVEALFLELVTELVQDGTVISAIMPKQ 468 (878)
T ss_dssp GGGTTEEEEEECCBCCSSCCCHHHHHHHHHHHHHHHSSCCSSCSSSCCHHHHHHHHHHHHSCTTCEEEEEEETH
T ss_pred cccCCCCEEEECCCccccccchhhhhhHHHHhhhhccccccccccccchHHHHHHHHHHhcCCCcEEEEEEChH
Confidence 235689999994221 11 110 11234667789999998 888888873
No 279
>3cvo_A Methyltransferase-like protein of unknown functio; rossman fold, structural genomics, joint center for structur genomics, JCSG; HET: MSE PG4; 1.80A {Silicibacter pomeroyi dss-3}
Probab=97.49 E-value=0.0012 Score=67.93 Aligned_cols=106 Identities=8% Similarity=-0.013 Sum_probs=72.0
Q ss_pred HHHHHHHhhcCCCCEEEEEcCccchHHHHHhcCCCCCceEEEEeCChHHHHHHHHHHhhhhhcccccCCCCCC--CccEE
Q 002218 702 VEYALQHIKESCATTLVDFGCGSGSLLDSLLDYPTALEKIVGVDISQKSLSRAAKIIHSKLSKKLDAAVPCTD--VKSAV 779 (952)
Q Consensus 702 ~efVldlL~~~k~krVLDIGCGeG~ll~~LAr~g~~~~qVVGVDISeemLe~ArkrLsa~la~~~~~l~Pr~~--~~nVt 779 (952)
.+++...+. +.++|||+||| +-+..|++.. ..+|+.||.+++..+.|++.+... +. ..+|+
T Consensus 21 ~~~L~~~l~--~a~~VLEiGtG--ySTl~lA~~~--~g~VvtvE~d~~~~~~ar~~l~~~-----------g~~~~~~I~ 83 (202)
T 3cvo_A 21 AEALRMAYE--EAEVILEYGSG--GSTVVAAELP--GKHVTSVESDRAWARMMKAWLAAN-----------PPAEGTEVN 83 (202)
T ss_dssp HHHHHHHHH--HCSEEEEESCS--HHHHHHHTST--TCEEEEEESCHHHHHHHHHHHHHS-----------CCCTTCEEE
T ss_pred HHHHHHHhh--CCCEEEEECch--HHHHHHHHcC--CCEEEEEeCCHHHHHHHHHHHHHc-----------CCCCCCceE
Confidence 344444333 67899999985 6777777752 279999999999999999887531 11 35899
Q ss_pred EEEcCcccc---------------C--------C-CCCCccEEEEccccccCChhHHHHHHHHHHHccCCCEEEEE
Q 002218 780 LFDGSITVF---------------D--------S-RLHGFDIGTCLEVIEHMEEDEASQFGNIVLSSFRPRILIVS 831 (952)
Q Consensus 780 f~qGDa~dL---------------p--------f-~d~sFDVVVcieVIEHL~dD~l~~L~eeI~RvLKPG~LIIS 831 (952)
++.||+.+. + . ..+.||+|+.-.- .....+. .+.+.|+||.+|+.
T Consensus 84 ~~~gda~~~~~wg~p~~~~~~~~l~~~~~~i~~~~~~~~fDlIfIDg~------k~~~~~~-~~l~~l~~GG~Iv~ 152 (202)
T 3cvo_A 84 IVWTDIGPTGDWGHPVSDAKWRSYPDYPLAVWRTEGFRHPDVVLVDGR------FRVGCAL-ATAFSITRPVTLLF 152 (202)
T ss_dssp EEECCCSSBCGGGCBSSSTTGGGTTHHHHGGGGCTTCCCCSEEEECSS------SHHHHHH-HHHHHCSSCEEEEE
T ss_pred EEEeCchhhhcccccccchhhhhHHHHhhhhhccccCCCCCEEEEeCC------CchhHHH-HHHHhcCCCeEEEE
Confidence 999997542 1 1 1367999987542 1123333 46789999955543
No 280
>1wg8_A Predicted S-adenosylmethionine-dependent methyltransferase; S-adenosyl-methyltransferase, MRAW; HET: SAM; 2.00A {Thermus thermophilus} SCOP: a.60.13.1 c.66.1.23
Probab=97.40 E-value=0.0002 Score=77.43 Aligned_cols=78 Identities=17% Similarity=0.244 Sum_probs=63.0
Q ss_pred HHHHHhhcCCCCEEEEEcCccchHHHHHhcCCCCCceEEEEeCChHHHHHHHHHHhhhhhcccccCCCCCCCccEEEEEc
Q 002218 704 YALQHIKESCATTLVDFGCGSGSLLDSLLDYPTALEKIVGVDISQKSLSRAAKIIHSKLSKKLDAAVPCTDVKSAVLFDG 783 (952)
Q Consensus 704 fVldlL~~~k~krVLDIGCGeG~ll~~LAr~g~~~~qVVGVDISeemLe~ArkrLsa~la~~~~~l~Pr~~~~nVtf~qG 783 (952)
.+++.+...++..+||.+||.|..+..|++.+ .+|+|+|.++.+++.|++ +. . .+++++++
T Consensus 13 e~le~L~~~~gg~~VD~T~G~GGHS~~il~~~---g~VigiD~Dp~Ai~~A~~-L~-------------~--~rv~lv~~ 73 (285)
T 1wg8_A 13 EALDLLAVRPGGVYVDATLGGAGHARGILERG---GRVIGLDQDPEAVARAKG-LH-------------L--PGLTVVQG 73 (285)
T ss_dssp HHHHHHTCCTTCEEEETTCTTSHHHHHHHHTT---CEEEEEESCHHHHHHHHH-TC-------------C--TTEEEEES
T ss_pred HHHHhhCCCCCCEEEEeCCCCcHHHHHHHHCC---CEEEEEeCCHHHHHHHHh-hc-------------c--CCEEEEEC
Confidence 45556666678899999999999999999874 799999999999999987 53 1 47999999
Q ss_pred CccccCC-----CCCCccEEEE
Q 002218 784 SITVFDS-----RLHGFDIGTC 800 (952)
Q Consensus 784 Da~dLpf-----~d~sFDVVVc 800 (952)
+..+++. ...+||.|++
T Consensus 74 ~f~~l~~~L~~~g~~~vDgIL~ 95 (285)
T 1wg8_A 74 NFRHLKRHLAALGVERVDGILA 95 (285)
T ss_dssp CGGGHHHHHHHTTCSCEEEEEE
T ss_pred CcchHHHHHHHcCCCCcCEEEe
Confidence 9988752 1246888876
No 281
>2b7v_A Double-stranded RNA-specific editase 1; RNA editing, RNA-binding protein, hydrolase; NMR {Rattus norvegicus} SCOP: d.50.1.1 PDB: 2l2k_B
Probab=97.38 E-value=0.00041 Score=59.80 Aligned_cols=66 Identities=17% Similarity=0.117 Sum_probs=49.9
Q ss_pred CCCChHhHHHHhccCceeEEEeeeeccccCCCCccccCCCCCceEEEeeecCCceeeeccccccchHHHHHHHHHHHHcC
Q 002218 14 MKLTPKAIIVQKFGRNAQFTVDEVQDVVQNGCPGLAIPQKGPCLYRCSLQLPEFSVVSETFKKKKDAEQSAAEKALEKLG 93 (952)
Q Consensus 14 ~~~tpka~~~q~~g~~~~y~~~ev~~~~~~~~~~~~~~q~~~~~~~c~l~lp~~~v~~~~~~~kkdaeq~aa~~al~klg 93 (952)
+.-+||.++++- ...-.|++.+.. | |...| .|.|.+.+.+.. .+|.-+-||+|||.||+.||++|.
T Consensus 2 ~~knp~s~L~E~-~~~p~Y~~~~~~-----G------p~h~~-~F~~~v~v~~~~-~~G~G~SKK~Aeq~AA~~al~~L~ 67 (71)
T 2b7v_A 2 SGKNPVMILNEL-RPGLKYDFLSES-----G------ESHAK-SFVMSVVVDGQF-FEGSGRNKKLAKARAAQSALATVF 67 (71)
T ss_dssp CSSCHHHHHHHH-CCSCEEEEEECC-----C------CTTTC-CEEEEEECSSCE-EEEEESSHHHHHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHh-CCCCEEEEEEeE-----C------CCCCc-eEEEEEEECCEE-EEEeeCCHHHHHHHHHHHHHHHHH
Confidence 456899999886 455678764321 1 22234 899999998864 489999999999999999999873
No 282
>3p1x_A Interleukin enhancer-binding factor 3; structural genomics, PSI-biology, protein structure initiati northeast structural genomics consortium, NESG; 1.90A {Homo sapiens}
Probab=97.35 E-value=0.0005 Score=60.19 Aligned_cols=69 Identities=22% Similarity=0.135 Sum_probs=52.4
Q ss_pred cCCCChHhHHHHhccCceeEEEeeeeccccCCCCccccCCCCCceEEEeeecCCceeeeccccccchHHHHHHHHHHHHc
Q 002218 13 KMKLTPKAIIVQKFGRNAQFTVDEVQDVVQNGCPGLAIPQKGPCLYRCSLQLPEFSVVSETFKKKKDAEQSAAEKALEKL 92 (952)
Q Consensus 13 ~~~~tpka~~~q~~g~~~~y~~~ev~~~~~~~~~~~~~~q~~~~~~~c~l~lp~~~v~~~~~~~kkdaeq~aa~~al~kl 92 (952)
++.-+|...++|+- ..-.|++.+... |...| .|.|.+.+.+... +|.-+-||.|||.||+.||++|
T Consensus 4 ~~~K~pl~~L~q~~-~~p~Y~~~~~~G-----------p~H~~-~F~~~v~v~g~~~-~G~G~SKK~Aeq~AA~~al~~L 69 (75)
T 3p1x_A 4 KHGKNPVMELNEKR-RGLKYELISETG-----------GSHDK-RFVMEVEVDGQKF-QGAGSNKKVAKAYAALAALEKL 69 (75)
T ss_dssp --CCCHHHHHHHHS-TTCCEEEEEEES-----------CTTSC-EEEEEEEETTEEE-EEEESSHHHHHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHcC-CCCEEEEEEeeC-----------CCCCc-eEEEEEEECCEEE-EEEECCHHHHHHHHHHHHHHHH
Confidence 56678999999985 567887754321 23344 8899888887655 8999999999999999999999
Q ss_pred CCC
Q 002218 93 GID 95 (952)
Q Consensus 93 g~~ 95 (952)
+-+
T Consensus 70 ~~~ 72 (75)
T 3p1x_A 70 FPD 72 (75)
T ss_dssp CTT
T ss_pred Hcc
Confidence 753
No 283
>2qy6_A UPF0209 protein YFCK; structural genomics, unknown function, PSI-2, protein struct initiative; 2.00A {Escherichia coli}
Probab=97.30 E-value=0.00038 Score=73.61 Aligned_cols=135 Identities=11% Similarity=-0.019 Sum_probs=74.7
Q ss_pred hhHHHHHHHHHHH-----hh--cCCCCEEEEEcCccchHHHHHhcC-------CCC----CceEEEEeCCh---HHHHHH
Q 002218 696 PLSKQRVEYALQH-----IK--ESCATTLVDFGCGSGSLLDSLLDY-------PTA----LEKIVGVDISQ---KSLSRA 754 (952)
Q Consensus 696 PL~~QR~efVldl-----L~--~~k~krVLDIGCGeG~ll~~LAr~-------g~~----~~qVVGVDISe---emLe~A 754 (952)
.+.+.++.|+... .. ..+..+|||+|+|+|..+..+++. .+. ..+++++|..+ +++..|
T Consensus 36 ~l~E~~~vF~~~~~lp~r~~~~~~~~~~ILEiGfGtG~n~l~~~~~~~~~~~~~p~~~~~~l~~isiE~~p~~~~~l~~a 115 (257)
T 2qy6_A 36 GLEETRYVFLGGNQLEARFPEHPHPLFVVAESGFGTGLNFLTLWQAFDQFREAHPQAQLQRLHFISFEKFPLTRADLALA 115 (257)
T ss_dssp HHHHHHHHHHHHTTHHHHGGGCSSSEEEEEESCCTTSHHHHHHHHHHHHHHHHCTTSSCCEEEEEEEESSCCCHHHHHHH
T ss_pred HHHHHHHHHHhccchHHHHHhcCCCCCEEEEECCChHHHHHHHHHHHHhhhhhCCCCCcceeEEEEEECCcCCHHHHHHH
Confidence 4556666665321 11 234579999999999998776542 211 25899999776 555543
Q ss_pred -----------HHHHhhhhh---cccccCCCCCCCccEEEEEcCccc-cCCCC----CCccEEEEcc-ccccCChhHHHH
Q 002218 755 -----------AKIIHSKLS---KKLDAAVPCTDVKSAVLFDGSITV-FDSRL----HGFDIGTCLE-VIEHMEEDEASQ 814 (952)
Q Consensus 755 -----------rkrLsa~la---~~~~~l~Pr~~~~nVtf~qGDa~d-Lpf~d----~sFDVVVcie-VIEHL~dD~l~~ 814 (952)
++.+..... +..... -..+..+++++.||+.+ ++... ..||+|+.-. .-...++-....
T Consensus 116 ~~~~p~l~~~a~~l~~~w~~~~~g~~r~~-~~~~~~~l~l~~GDa~~~l~~~~~~~~~~~D~iflD~fsp~~~p~lw~~~ 194 (257)
T 2qy6_A 116 HQHWPELAPWAEQLQAQWPMPLPGCHRLL-LDEGRVTLDLWFGDINELISQLDDSLNQKVDAWFLDGFAPAKNPDMWTQN 194 (257)
T ss_dssp HTTCGGGHHHHHHHHHTCCCSCSEEEEEE-EC--CEEEEEEESCHHHHGGGSCGGGTTCEEEEEECSSCTTTCGGGCCHH
T ss_pred HhcChhHHHHHHHHHHhccccccchhhee-ccCCceEEEEEECcHHHHHhhcccccCCeEEEEEECCCCcccChhhcCHH
Confidence 333221000 000000 01123478999999987 33322 2799998742 222122101134
Q ss_pred HHHHHHHccCCCEEEEE
Q 002218 815 FGNIVLSSFRPRILIVS 831 (952)
Q Consensus 815 L~eeI~RvLKPG~LIIS 831 (952)
+.+.+.++|+||.++++
T Consensus 195 ~l~~l~~~L~pGG~l~t 211 (257)
T 2qy6_A 195 LFNAMARLARPGGTLAT 211 (257)
T ss_dssp HHHHHHHHEEEEEEEEE
T ss_pred HHHHHHHHcCCCcEEEE
Confidence 55679999999955543
No 284
>3evf_A RNA-directed RNA polymerase NS5; NS5 methyltransferase, RNA CAP binding, binding, capsid protein; HET: GTA SAH; 1.45A {Yellow fever virus} SCOP: c.66.1.0 PDB: 3evb_A* 3evc_A* 3evd_A* 3eve_A* 3eva_A*
Probab=97.27 E-value=0.00029 Score=75.92 Aligned_cols=116 Identities=9% Similarity=0.069 Sum_probs=69.3
Q ss_pred HHHHHHhhcCCCCEEEEEcCccchHHHHHhcCCCCCceEEEEeCChHHHHHHHHHHhhhhhcccccCCCCCCCccEEEEE
Q 002218 703 EYALQHIKESCATTLVDFGCGSGSLLDSLLDYPTALEKIVGVDISQKSLSRAAKIIHSKLSKKLDAAVPCTDVKSAVLFD 782 (952)
Q Consensus 703 efVldlL~~~k~krVLDIGCGeG~ll~~LAr~g~~~~qVVGVDISeemLe~ArkrLsa~la~~~~~l~Pr~~~~nVtf~q 782 (952)
..+.+.....+..+|||||||.|.++..+++.. +...++|+|++.++..... . .. ..+ .++..++
T Consensus 64 ~ei~ek~~l~~~~~VLDLGaAPGGWSQvAa~~~-~~~~v~g~dVGvDl~~~pi------~------~~-~~g-~~ii~~~ 128 (277)
T 3evf_A 64 RWFHERGYVKLEGRVIDLGCGRGGWCYYAAAQK-EVSGVKGFTLGRDGHEKPM------N------VQ-SLG-WNIITFK 128 (277)
T ss_dssp HHHHHTTSSCCCEEEEEETCTTCHHHHHHHTST-TEEEEEEECCCCTTCCCCC------C------CC-BTT-GGGEEEE
T ss_pred HHHHHhCCCCCCCEEEEecCCCCHHHHHHHHhc-CCCcceeEEEeccCccccc------c------cC-cCC-CCeEEEe
Confidence 334333223456799999999999999887653 2367899999865310000 0 00 001 1455567
Q ss_pred cCccccCCCCCCccEEEEccccccCCh---hHHH--HHHHHHHHccCCC--EEEEEecC
Q 002218 783 GSITVFDSRLHGFDIGTCLEVIEHMEE---DEAS--QFGNIVLSSFRPR--ILIVSTPN 834 (952)
Q Consensus 783 GDa~dLpf~d~sFDVVVcieVIEHL~d---D~l~--~L~eeI~RvLKPG--~LIISTPN 834 (952)
+++....+....||+|+|-...+ -.. |... .+.+.+.++|+|| .+++-+-.
T Consensus 129 ~~~dv~~l~~~~~DlVlsD~apn-sG~~~~D~~rs~~LL~~a~~~LkpG~G~FV~KVf~ 186 (277)
T 3evf_A 129 DKTDIHRLEPVKCDTLLCDIGES-SSSSVTEGERTVRVLDTVEKWLACGVDNFCVKVLA 186 (277)
T ss_dssp CSCCTTTSCCCCCSEEEECCCCC-CSCHHHHHHHHHHHHHHHHHHHTTCCSEEEEEESC
T ss_pred ccceehhcCCCCccEEEecCccC-cCchHHHHHHHHHHHHHHHHHhCCCCCeEEEEecC
Confidence 77655666678899999965443 221 1111 2346678999998 45554443
No 285
>1x49_A Interferon-induced, double-stranded RNA- activated protein kinase; structure genomics, DSRM domain, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.50.1.1
Probab=97.24 E-value=0.00065 Score=62.45 Aligned_cols=78 Identities=15% Similarity=0.116 Sum_probs=57.1
Q ss_pred cccccccCCCChHhHHH---HhccCceeEEEeeeeccccCCCCccccCCCCCceEEEeeecCCceeeeccccccchHHHH
Q 002218 7 SVVAVRKMKLTPKAIIV---QKFGRNAQFTVDEVQDVVQNGCPGLAIPQKGPCLYRCSLQLPEFSVVSETFKKKKDAEQS 83 (952)
Q Consensus 7 ~~~~~~~~~~tpka~~~---q~~g~~~~y~~~ev~~~~~~~~~~~~~~q~~~~~~~c~l~lp~~~v~~~~~~~kkdaeq~ 83 (952)
+.+|...+...||-.++ |+.|..-.|++.+.. | |.--| .|.|.+.+.+..+.+|.=+-||+|||.
T Consensus 5 ~~~m~~~~~~n~Kt~LqE~~Q~~~~~p~Y~~~~~~-----G------p~H~~-~F~v~v~i~g~~~~~G~G~SKK~Aeq~ 72 (97)
T 1x49_A 5 SSGMASDTPGFYMDKLNKYRQMHGVAITYKELSTS-----G------PPHDR-RFTFQVLIDEKEFPEAKGRSKQEARNA 72 (97)
T ss_dssp CCSSSCCCTTHHHHHHHHHHHHHTCCEEEEEEEEE-----S------CSSSC-EEEEEEEESSCCCCCEEESSHHHHHHH
T ss_pred cccccCCCCCCHHHHHHHHHHHcCCCCeEEEEEee-----C------CCCCC-cEEEEEEECCEEEEEEeeCCHHHHHHH
Confidence 45677667778998875 455555688764321 1 22233 899999998866667888999999999
Q ss_pred HHHHHHHHcCCCC
Q 002218 84 AAEKALEKLGIDP 96 (952)
Q Consensus 84 aa~~al~klg~~~ 96 (952)
||+.||++|+-..
T Consensus 73 AA~~AL~~L~~~~ 85 (97)
T 1x49_A 73 AAKLAVDILDNEN 85 (97)
T ss_dssp HHHHHHHHHTTTC
T ss_pred HHHHHHHHHHhhc
Confidence 9999999998543
No 286
>4auk_A Ribosomal RNA large subunit methyltransferase M; YGDE; HET: TLA PGE; 1.90A {Escherichia coli} PDB: 4atn_A* 4b17_A*
Probab=97.17 E-value=0.0009 Score=74.83 Aligned_cols=70 Identities=16% Similarity=0.107 Sum_probs=56.1
Q ss_pred CCCCEEEEEcCccchHHHHHhcCCCCCceEEEEeCChHHHHHHHHHHhhhhhcccccCCCCCCCccEEEEEcCccccCCC
Q 002218 712 SCATTLVDFGCGSGSLLDSLLDYPTALEKIVGVDISQKSLSRAAKIIHSKLSKKLDAAVPCTDVKSAVLFDGSITVFDSR 791 (952)
Q Consensus 712 ~k~krVLDIGCGeG~ll~~LAr~g~~~~qVVGVDISeemLe~ArkrLsa~la~~~~~l~Pr~~~~nVtf~qGDa~dLpf~ 791 (952)
.++.+|||+||+.|.++..|++++ .+|+|||+.+ |-. .+. ..++|+++++|+..+.+.
T Consensus 210 ~~G~~vlDLGAaPGGWT~~l~~rg---~~V~aVD~~~-l~~----~l~--------------~~~~V~~~~~d~~~~~~~ 267 (375)
T 4auk_A 210 ANGMWAVDLGACPGGWTYQLVKRN---MWVYSVDNGP-MAQ----SLM--------------DTGQVTWLREDGFKFRPT 267 (375)
T ss_dssp CTTCEEEEETCTTCHHHHHHHHTT---CEEEEECSSC-CCH----HHH--------------TTTCEEEECSCTTTCCCC
T ss_pred CCCCEEEEeCcCCCHHHHHHHHCC---CEEEEEEhhh-cCh----hhc--------------cCCCeEEEeCccccccCC
Confidence 468999999999999999999998 7999999764 111 111 224899999999988877
Q ss_pred CCCccEEEEccc
Q 002218 792 LHGFDIGTCLEV 803 (952)
Q Consensus 792 d~sFDVVVcieV 803 (952)
...||+|+|-.+
T Consensus 268 ~~~~D~vvsDm~ 279 (375)
T 4auk_A 268 RSNISWMVCDMV 279 (375)
T ss_dssp SSCEEEEEECCS
T ss_pred CCCcCEEEEcCC
Confidence 788999999554
No 287
>3llh_A RISC-loading complex subunit tarbp2; DSRBD, DSRM, microrna, RNA binding protein; 2.14A {Homo sapiens}
Probab=97.06 E-value=0.001 Score=60.11 Aligned_cols=70 Identities=19% Similarity=0.262 Sum_probs=48.5
Q ss_pred ccCCCChHhHHH---HhccCceeEEEeeeeccccCCCCccccCCCCCceEEEeeecCCceeeeccccccchHHHHHHHHH
Q 002218 12 RKMKLTPKAIIV---QKFGRNAQFTVDEVQDVVQNGCPGLAIPQKGPCLYRCSLQLPEFSVVSETFKKKKDAEQSAAEKA 88 (952)
Q Consensus 12 ~~~~~tpka~~~---q~~g~~~~y~~~ev~~~~~~~~~~~~~~q~~~~~~~c~l~lp~~~v~~~~~~~kkdaeq~aa~~a 88 (952)
..+.-+||-.++ |+.|..-.|++.+... |.-.| .|.|.+.+.+. +.+|.-+-||+|||.||+.|
T Consensus 10 ~~~~kd~Ks~LqE~~q~~~~~p~Y~~~~~~G-----------p~H~~-~F~~~v~v~g~-~~~G~G~SKK~Aeq~AA~~a 76 (90)
T 3llh_A 10 ANPGKTPISLLQEYGTRIGKTPVYDLLKAEG-----------QAHQP-NFTFRVTVGDT-SCTGQGPSKKAAKHKAAEVA 76 (90)
T ss_dssp ---CCCHHHHHHHHHHHTTCCCEEEEEEEC----------------C-CEEEEEEETTE-EEEEEESSHHHHHHHHHHHH
T ss_pred cccCCCHHHHHHHHHHhcCCCCEEEEEEeEC-----------CCCCC-cEEEEEEECCE-EEEEEeCCHHHHHHHHHHHH
Confidence 456678998875 5667677897642211 22223 68888888775 56799999999999999999
Q ss_pred HHHcCC
Q 002218 89 LEKLGI 94 (952)
Q Consensus 89 l~klg~ 94 (952)
|++|+-
T Consensus 77 L~~L~~ 82 (90)
T 3llh_A 77 LKHLKG 82 (90)
T ss_dssp HHHHC-
T ss_pred HHHHHh
Confidence 999974
No 288
>1ekz_A DSRBDIII, maternal effect protein (staufen); structure, protein/RNA, protein DSRBD, RNA hairpin; NMR {Drosophila melanogaster} SCOP: d.50.1.1 PDB: 1stu_A
Probab=97.05 E-value=0.00083 Score=58.57 Aligned_cols=69 Identities=23% Similarity=0.179 Sum_probs=49.5
Q ss_pred ccCCCChHhHHH---HhccCceeEEEeeeeccccCCCCccccCCCCCceEEEeeecCCceeeeccccccchHHHHHHHHH
Q 002218 12 RKMKLTPKAIIV---QKFGRNAQFTVDEVQDVVQNGCPGLAIPQKGPCLYRCSLQLPEFSVVSETFKKKKDAEQSAAEKA 88 (952)
Q Consensus 12 ~~~~~tpka~~~---q~~g~~~~y~~~ev~~~~~~~~~~~~~~q~~~~~~~c~l~lp~~~v~~~~~~~kkdaeq~aa~~a 88 (952)
..+...||-.++ |+-|-.-.|++.+. .| |...| .|.|.+.+.+ .+-+|.=+-||+|||.||+.|
T Consensus 3 ~~~~~d~ks~LqE~~q~~~~~p~Y~~~~~-----~G------p~h~~-~F~~~v~i~~-~~~~G~G~sKK~Aeq~AA~~a 69 (76)
T 1ekz_A 3 EGDKKSPISQVHEIGIKRNMTVHFKVLRE-----EG------PAHMK-NFITACIVGS-IVTEGEGNGKKVSKKRAAEKM 69 (76)
T ss_dssp CCCCSCHHHHHHHHHHHTTCCCEEEESSS-----CC------SSSCS-CSSEEEEETT-EEEEECCCSTTSSSHHHHHHH
T ss_pred CCCCCCHHHHHHHHHHHcCCCCEEEEEEe-----EC------CCCCC-cEEEEEEECC-EEEEEeeCCHHHHHHHHHHHH
Confidence 345568888875 44454467876321 11 22233 6888888888 666699999999999999999
Q ss_pred HHHcC
Q 002218 89 LEKLG 93 (952)
Q Consensus 89 l~klg 93 (952)
|++|+
T Consensus 70 L~~L~ 74 (76)
T 1ekz_A 70 LVELQ 74 (76)
T ss_dssp HHHHT
T ss_pred HHHHh
Confidence 99986
No 289
>2l33_A Interleukin enhancer-binding factor 3; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, DRBM; NMR {Homo sapiens}
Probab=97.01 E-value=0.0022 Score=58.50 Aligned_cols=68 Identities=19% Similarity=0.086 Sum_probs=52.5
Q ss_pred cCCCChHhHHHHhccCceeEEEeeeeccccCCCCccccCCCCCceEEEeeecCCceeeeccccccchHHHHHHHHHHHHc
Q 002218 13 KMKLTPKAIIVQKFGRNAQFTVDEVQDVVQNGCPGLAIPQKGPCLYRCSLQLPEFSVVSETFKKKKDAEQSAAEKALEKL 92 (952)
Q Consensus 13 ~~~~tpka~~~q~~g~~~~y~~~ev~~~~~~~~~~~~~~q~~~~~~~c~l~lp~~~v~~~~~~~kkdaeq~aa~~al~kl 92 (952)
...-+|.--+.|+-+ .-.|++.+... |.--| .|.|.+.+.+... +|.=+-||+|||.||+.||++|
T Consensus 14 ~~~K~~LqEl~Qk~~-~p~Y~~v~~~G-----------p~H~~-~F~v~V~v~g~~~-~G~G~SKK~AEq~AA~~AL~~L 79 (91)
T 2l33_A 14 KHGKNPVMELNEKRR-GLKYELISETG-----------GSHDK-RFVMEVEVDGQKF-QGAGSNKKVAKAYAALAALEKL 79 (91)
T ss_dssp SSTTCHHHHHHHHCS-SCEEEEEEEEE-----------CSSCE-EEEEEEEETTEEE-EEEESSHHHHHHHHHHHHHHHH
T ss_pred cCCCCHHHHHHHhCC-CCeEEEEEeeC-----------CCCCC-eEEEEEEECCEEE-EeeeCCHHHHHHHHHHHHHHHH
Confidence 344577778888888 77898754321 22233 8999999998654 8999999999999999999999
Q ss_pred CC
Q 002218 93 GI 94 (952)
Q Consensus 93 g~ 94 (952)
+-
T Consensus 80 ~~ 81 (91)
T 2l33_A 80 FP 81 (91)
T ss_dssp CC
T ss_pred hh
Confidence 74
No 290
>2k4m_A TR8_protein, UPF0146 protein MTH_1000; alpha+beta, rossman fold, structural genomics, PSI-2; NMR {Methanothermobacterthermautotrophicus str}
Probab=96.90 E-value=0.00085 Score=66.58 Aligned_cols=96 Identities=17% Similarity=0.133 Sum_probs=61.3
Q ss_pred HHHHHHHhhcCCCCEEEEEcCccc-hHHHHHhc-CCCCCceEEEEeCChHHHHHHHHHHhhhhhcccccCCCCCCCccEE
Q 002218 702 VEYALQHIKESCATTLVDFGCGSG-SLLDSLLD-YPTALEKIVGVDISQKSLSRAAKIIHSKLSKKLDAAVPCTDVKSAV 779 (952)
Q Consensus 702 ~efVldlL~~~k~krVLDIGCGeG-~ll~~LAr-~g~~~~qVVGVDISeemLe~ArkrLsa~la~~~~~l~Pr~~~~nVt 779 (952)
.+|+.+.+. .+.+|||||||.| ..+..|++ .+ ..|+++|+++.+++
T Consensus 26 aeYI~~~~~--~~~rVlEVG~G~g~~vA~~La~~~g---~~V~atDInp~Av~--------------------------- 73 (153)
T 2k4m_A 26 AVYIIRCSG--PGTRVVEVGAGRFLYVSDYIRKHSK---VDLVLTDIKPSHGG--------------------------- 73 (153)
T ss_dssp HHHHHHHSC--SSSEEEEETCTTCCHHHHHHHHHSC---CEEEEECSSCSSTT---------------------------
T ss_pred HHHHHhcCC--CCCcEEEEccCCChHHHHHHHHhCC---CeEEEEECCccccc---------------------------
Confidence 344444332 4579999999999 69999997 66 89999999886544
Q ss_pred EEEcCccccCCCC-CCccEEEEccccccCChhHHHHHHHHHHHccCCCEEEEEecCC
Q 002218 780 LFDGSITVFDSRL-HGFDIGTCLEVIEHMEEDEASQFGNIVLSSFRPRILIVSTPNY 835 (952)
Q Consensus 780 f~qGDa~dLpf~d-~sFDVVVcieVIEHL~dD~l~~L~eeI~RvLKPG~LIISTPN~ 835 (952)
+++.|+.+..... ..||+|.++.- +++-...+. .+++.+.- -++|.+-..
T Consensus 74 ~v~dDiF~P~~~~Y~~~DLIYsirP----P~El~~~i~-~lA~~v~a-dliI~pL~~ 124 (153)
T 2k4m_A 74 IVRDDITSPRMEIYRGAALIYSIRP----PAEIHSSLM-RVADAVGA-RLIIKPLTG 124 (153)
T ss_dssp EECCCSSSCCHHHHTTEEEEEEESC----CTTTHHHHH-HHHHHHTC-EEEEECBTT
T ss_pred eEEccCCCCcccccCCcCEEEEcCC----CHHHHHHHH-HHHHHcCC-CEEEEcCCC
Confidence 4556776644332 48999988654 222223333 35554432 455554443
No 291
>3b5i_A S-adenosyl-L-methionine:salicylic acid carboxyl methyltransferase-like protein; sabath family, indole-3-acetic acid, S-AD methionine; HET: SAH; 2.75A {Arabidopsis thaliana}
Probab=96.89 E-value=0.0024 Score=71.25 Aligned_cols=121 Identities=11% Similarity=0.089 Sum_probs=75.2
Q ss_pred CCEEEEEcCccchHHHHHh--------cC------CCCCceEEEEeCChHHHHHHHHHHhhhhhccc-ccCCCCC--CCc
Q 002218 714 ATTLVDFGCGSGSLLDSLL--------DY------PTALEKIVGVDISQKSLSRAAKIIHSKLSKKL-DAAVPCT--DVK 776 (952)
Q Consensus 714 ~krVLDIGCGeG~ll~~LA--------r~------g~~~~qVVGVDISeemLe~ArkrLsa~la~~~-~~l~Pr~--~~~ 776 (952)
..+|+|+|||+|.++..+. +. ..+..+|+.-|+-......--+.+........ +...+.. ..-
T Consensus 53 ~~~IaDlGCssG~Nt~~~v~~ii~~i~~~~~~~~~~~pe~~v~~nDLp~NDFn~lF~~L~~~~~~~~~~~~~~~~~~~~~ 132 (374)
T 3b5i_A 53 PFTAVDLGCSSGANTVHIIDFIVKHISKRFDAAGIDPPEFTAFFSDLPSNDFNTLFQLLPPLVSNTCMEECLAADGNRSY 132 (374)
T ss_dssp CEEEEEETCCSSHHHHHHHHHHHHHHHHHHHHTTCCCCCEEEEEEECTTSCHHHHHHHSCCBCCCC--CCC---CCCBCS
T ss_pred ceEEEecCCCCChhHHHHHHHHHHHHHHHHhhcCCCCCceeEEecCCCccchHHHHhhhhhhhhhcchhhhccccCCCce
Confidence 4689999999999997661 11 12457899999877655444444332110000 0000000 011
Q ss_pred cEEEEEcCccccCCCCCCccEEEEccccccCChh------------------------------------HHHHHHHHHH
Q 002218 777 SAVLFDGSITVFDSRLHGFDIGTCLEVIEHMEED------------------------------------EASQFGNIVL 820 (952)
Q Consensus 777 nVtf~qGDa~dLpf~d~sFDVVVcieVIEHL~dD------------------------------------~l~~L~eeI~ 820 (952)
=+.-+-|+.....++.++||+|+++.++||+... +...|.+...
T Consensus 133 f~~gvpgSFy~rlfP~~S~d~v~Ss~aLHWls~~p~~l~~~~~~~~nkg~i~~~~~~~~v~~ay~~Qf~~D~~~fL~~ra 212 (374)
T 3b5i_A 133 FVAGVPGSFYRRLFPARTIDFFHSAFSLHWLSQVPESVTDRRSAAYNRGRVFIHGAGEKTTTAYKRQFQADLAEFLRARA 212 (374)
T ss_dssp EEEEEESCTTSCCSCTTCEEEEEEESCTTBCSSCCGGGGCTTSTTCCTTTSSSSSCCHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred EEEecChhhhcccCCCcceEEEEecceeeeeccCchhhhccccccccCCceEeCCCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 1333455665566788999999999999999721 3345677889
Q ss_pred HccCCC-EEEEEecC
Q 002218 821 SSFRPR-ILIVSTPN 834 (952)
Q Consensus 821 RvLKPG-~LIISTPN 834 (952)
+.|+|| .+++++..
T Consensus 213 ~eL~pGG~mvl~~~g 227 (374)
T 3b5i_A 213 AEVKRGGAMFLVCLG 227 (374)
T ss_dssp HHEEEEEEEEEEEEE
T ss_pred HHhCCCCEEEEEEec
Confidence 999999 77777764
No 292
>2dix_A Interferon-inducible double stranded RNA- dependent protein kinase activator A; structure genomics, DSRM domain, hypothetical protein PRKRA; NMR {Homo sapiens} SCOP: d.50.1.1
Probab=96.88 E-value=0.0023 Score=57.18 Aligned_cols=66 Identities=18% Similarity=0.175 Sum_probs=49.7
Q ss_pred CCChHhHHH---HhccCceeEEEeeeeccccCCCCccccCCCCCceEEEeeecCCceeeeccccccchHHHHHHHHHHHH
Q 002218 15 KLTPKAIIV---QKFGRNAQFTVDEVQDVVQNGCPGLAIPQKGPCLYRCSLQLPEFSVVSETFKKKKDAEQSAAEKALEK 91 (952)
Q Consensus 15 ~~tpka~~~---q~~g~~~~y~~~ev~~~~~~~~~~~~~~q~~~~~~~c~l~lp~~~v~~~~~~~kkdaeq~aa~~al~k 91 (952)
...||-.++ |+.+..-.|++.+.. | |..-| .|.|.+.+.+ .+.+|.-+-||+|||.||+.||++
T Consensus 7 ~~d~Ks~LqE~~q~~~~~p~Y~~~~~~-----G------p~h~~-~F~~~v~v~~-~~~~G~G~SKK~Aeq~AA~~aL~~ 73 (84)
T 2dix_A 7 GKTPIQVLHEYGMKTKNIPVYECERSD-----V------QIHVP-TFTFRVTVGD-ITCTGEGTSKKLAKHRAAEAAINI 73 (84)
T ss_dssp CCCHHHHHHHHHHHTTCCCEEEEEEEE-----C------SSSSC-EEEEEEEETT-EEEEECSSCTTHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHcCCCCeEEEEEeE-----C------CCCCC-eEEEEEEECC-EEEEeeeCCHHHHHHHHHHHHHHH
Confidence 357888765 455655689875332 1 22334 8999999988 667799999999999999999999
Q ss_pred cC
Q 002218 92 LG 93 (952)
Q Consensus 92 lg 93 (952)
|+
T Consensus 74 L~ 75 (84)
T 2dix_A 74 LK 75 (84)
T ss_dssp HH
T ss_pred Hh
Confidence 96
No 293
>1uhz_A Staufen (RNA binding protein) homolog 2; DSRM, staufen homolog 2, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.50.1.1
Probab=96.87 E-value=0.0029 Score=57.26 Aligned_cols=67 Identities=19% Similarity=0.177 Sum_probs=50.1
Q ss_pred CCChHhHHH---HhccCc-eeEEEeeeeccccCCCCccccCCCCCceEEEeeecCCceeeeccccccchHHHHHHHHHHH
Q 002218 15 KLTPKAIIV---QKFGRN-AQFTVDEVQDVVQNGCPGLAIPQKGPCLYRCSLQLPEFSVVSETFKKKKDAEQSAAEKALE 90 (952)
Q Consensus 15 ~~tpka~~~---q~~g~~-~~y~~~ev~~~~~~~~~~~~~~q~~~~~~~c~l~lp~~~v~~~~~~~kkdaeq~aa~~al~ 90 (952)
...||-+++ |+.+-. -.|++.+... |...| .|.|.+.+.+. +..|.-+-||+|||.||+.||+
T Consensus 5 ~~d~Kt~LqE~~Q~~~~~~P~Y~~~~~~G-----------p~H~~-~F~~~v~v~g~-~~~G~G~SKK~Aeq~AA~~AL~ 71 (89)
T 1uhz_A 5 SSGPISRLAQIQQARKEKEPDYILLSERG-----------MPRRR-EFVMQVKVGNE-VATGTGPNKKIAKKNAAEAMLL 71 (89)
T ss_dssp SSCHHHHHHHHHHHTTSCCCEEEEEEEES-----------CSTTC-EEEEEEEETTE-EEEEEESSHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHhCCCCCeEEEEEeEC-----------CCCCC-eEEEEEEECCE-EEEEeeCCHHHHHHHHHHHHHH
Confidence 357888775 555654 5898753321 22233 79999999885 6679999999999999999999
Q ss_pred HcCC
Q 002218 91 KLGI 94 (952)
Q Consensus 91 klg~ 94 (952)
+|+-
T Consensus 72 ~L~~ 75 (89)
T 1uhz_A 72 QLGY 75 (89)
T ss_dssp HHTS
T ss_pred HHhc
Confidence 9974
No 294
>3c6k_A Spermine synthase; spermidine aminopropyltransferase, SPMSY, structural genomics, structural genomics consortium, SGC, phosphoprotein; HET: SPD MTA; 1.95A {Homo sapiens} PDB: 3c6m_A*
Probab=96.85 E-value=0.0017 Score=72.71 Aligned_cols=114 Identities=10% Similarity=0.038 Sum_probs=75.2
Q ss_pred CCCCEEEEEcCccchHHHHHhcCCCCCceEEEEeCChHHHHHHHHHHhhhhhcccccCCCCCCCccEEEEEcCccccC--
Q 002218 712 SCATTLVDFGCGSGSLLDSLLDYPTALEKIVGVDISQKSLSRAAKIIHSKLSKKLDAAVPCTDVKSAVLFDGSITVFD-- 789 (952)
Q Consensus 712 ~k~krVLDIGCGeG~ll~~LAr~g~~~~qVVGVDISeemLe~ArkrLsa~la~~~~~l~Pr~~~~nVtf~qGDa~dLp-- 789 (952)
.++++||=||-|.|..++.+.++.. .+|+.|||++..++.|++.+....... .. ....++++++.+|+..+-
T Consensus 204 ~~pkrVLIIGgGdG~~~revlkh~~--~~V~~VEIDp~VVe~ar~yfp~~~~~~---~d-~pr~~rv~vii~Da~~fl~~ 277 (381)
T 3c6k_A 204 YTGKDVLILGGGDGGILCEIVKLKP--KMVTMVEIDQMVIDGCKKYMRKTCGDV---LD-NLKGDCYQVLIEDCIPVLKR 277 (381)
T ss_dssp CTTCEEEEEECTTCHHHHHHHTTCC--SEEEEEESCHHHHHHHHHHCCC----C---CS-SSEETTEEEEESCHHHHHHH
T ss_pred CCCCeEEEECCCcHHHHHHHHhcCC--ceeEEEccCHHHHHHHHhhchhhhhhh---hc-cccccceeeehHHHHHHHHh
Confidence 3568999999999999999999763 799999999999999987643211000 00 011246899999987642
Q ss_pred --CCCCCccEEEEccc-------cccCCh-hHHHHHHHHHHHccCCCEEEEE
Q 002218 790 --SRLHGFDIGTCLEV-------IEHMEE-DEASQFGNIVLSSFRPRILIVS 831 (952)
Q Consensus 790 --f~d~sFDVVVcieV-------IEHL~d-D~l~~L~eeI~RvLKPG~LIIS 831 (952)
...+.||+|+.--. -.+... .--+.|.+.+.+.|+||.++++
T Consensus 278 ~~~~~~~yDvIIvDl~D~~~s~~p~g~a~~Lft~eFy~~~~~~L~p~GVlv~ 329 (381)
T 3c6k_A 278 YAKEGREFDYVINDLTAVPISTSPEEDSTWEFLRLILDLSMKVLKQDGKYFT 329 (381)
T ss_dssp HHHHTCCEEEEEEECCSSCCCCC----CHHHHHHHHHHHHHHTEEEEEEEEE
T ss_pred hhhccCceeEEEECCCCCcccCcccCcchHHHHHHHHHHHHHhcCCCCEEEE
Confidence 23567999986311 111111 0113456678999999955553
No 295
>1di2_A XLRBPA, double stranded RNA binding protein A; protein-RNA complex, protein-RNA interactions, RNA-bining protein; 1.90A {Xenopus laevis} SCOP: d.50.1.1
Probab=96.82 E-value=0.0015 Score=55.88 Aligned_cols=63 Identities=25% Similarity=0.355 Sum_probs=45.7
Q ss_pred hHhHHH---HhccCc-eeEEEeeeeccccCCCCccccCCCCCceEEEeeecCCceeeeccccccchHHHHHHHHHHHHcC
Q 002218 18 PKAIIV---QKFGRN-AQFTVDEVQDVVQNGCPGLAIPQKGPCLYRCSLQLPEFSVVSETFKKKKDAEQSAAEKALEKLG 93 (952)
Q Consensus 18 pka~~~---q~~g~~-~~y~~~ev~~~~~~~~~~~~~~q~~~~~~~c~l~lp~~~v~~~~~~~kkdaeq~aa~~al~klg 93 (952)
||-.++ |+-|-. -.|++.+.. | |...| .|.|.+.+.+. +-+|.-+-||+|||.||+.||++|+
T Consensus 2 p~s~LqE~~q~~~~~~p~Y~~~~~~-----G------p~h~~-~F~~~v~v~~~-~~~G~G~sKK~Aeq~AA~~al~~L~ 68 (69)
T 1di2_A 2 PVGSLQELAVQKGWRLPEYTVAQES-----G------PPHKR-EFTITCRVETF-VETGSGTSKQVAKRVAAEKLLTKFK 68 (69)
T ss_dssp HHHHHHHHHHHHTCCCCEEEEEEEE-----S------CGGGC-EEEEEEEETTE-EEEEEESSHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHcCCCCCEEEEEEeE-----C------CCCCC-eEEEEEEECCE-EEEeecCCHHHHHHHHHHHHHHHHh
Confidence 555443 555554 478764321 1 12233 89999999996 7779999999999999999999985
No 296
>3gcz_A Polyprotein; flavivirus, RNA capping, methyltransferase, viral enzyme STR ATP-binding, nucleotide-binding, RNA replication, structura genomics; HET: SAM; 1.70A {Yokose virus}
Probab=96.81 E-value=0.00077 Score=72.77 Aligned_cols=107 Identities=13% Similarity=0.131 Sum_probs=63.4
Q ss_pred CCCCEEEEEcCccchHHHHHhcCCCCCceEEEEeCChHHHHHHHHHHhhhhhcccccCCCCCCCccEEEEEcCccccCCC
Q 002218 712 SCATTLVDFGCGSGSLLDSLLDYPTALEKIVGVDISQKSLSRAAKIIHSKLSKKLDAAVPCTDVKSAVLFDGSITVFDSR 791 (952)
Q Consensus 712 ~k~krVLDIGCGeG~ll~~LAr~g~~~~qVVGVDISeemLe~ArkrLsa~la~~~~~l~Pr~~~~nVtf~qGDa~dLpf~ 791 (952)
.+..+|||||||.|.++...++.. +...|+|+|++..+...+... . ..+ .++.....++....+.
T Consensus 89 k~~~~VLDLGaAPGGWsQvAa~~~-gv~sV~GvdvG~d~~~~pi~~------------~-~~g-~~ii~~~~~~dv~~l~ 153 (282)
T 3gcz_A 89 KPTGIVVDLGCGRGGWSYYAASLK-NVKKVMAFTLGVQGHEKPIMR------------T-TLG-WNLIRFKDKTDVFNME 153 (282)
T ss_dssp CCCEEEEEETCTTCHHHHHHHTST-TEEEEEEECCCCTTSCCCCCC------------C-BTT-GGGEEEECSCCGGGSC
T ss_pred CCCCEEEEeCCCCCHHHHHHHHhc-CCCeeeeEEeccCcccccccc------------c-cCC-CceEEeeCCcchhhcC
Confidence 456799999999999999877554 246799999987642222100 0 011 1333344333334445
Q ss_pred CCCccEEEEccccccCCh---hHH--HHHHHHHHHccCCC---EEEEEecC
Q 002218 792 LHGFDIGTCLEVIEHMEE---DEA--SQFGNIVLSSFRPR---ILIVSTPN 834 (952)
Q Consensus 792 d~sFDVVVcieVIEHL~d---D~l--~~L~eeI~RvLKPG---~LIISTPN 834 (952)
...+|+|+|-.... -.. |.. -.+.+.+..+|+|| .+++-+-.
T Consensus 154 ~~~~DvVLSDmApn-sG~~~~D~~rs~~LL~~A~~~Lk~g~~G~Fv~KvF~ 203 (282)
T 3gcz_A 154 VIPGDTLLCDIGES-SPSIAVEEQRTLRVLNCAKQWLQEGNYTEFCIKVLC 203 (282)
T ss_dssp CCCCSEEEECCCCC-CSCHHHHHHHHHHHHHHHHHHHHHHCCCEEEEEESC
T ss_pred CCCcCEEEecCccC-CCChHHHHHHHHHHHHHHHHHcCCCCCCcEEEEEec
Confidence 67899999965544 221 111 12345567889887 45554443
No 297
>2zig_A TTHA0409, putative modification methylase; methyltransferase, S- adenosylmethionine, structural genomics, NPPSFA; 2.10A {Thermus thermophilus} PDB: 2zie_A* 2zif_A
Probab=96.78 E-value=0.0019 Score=68.76 Aligned_cols=54 Identities=15% Similarity=0.212 Sum_probs=45.5
Q ss_pred HHHHHHhhcCCCCEEEEEcCccchHHHHHhcCCCCCceEEEEeCChHHHHHHHHHHhh
Q 002218 703 EYALQHIKESCATTLVDFGCGSGSLLDSLLDYPTALEKIVGVDISQKSLSRAAKIIHS 760 (952)
Q Consensus 703 efVldlL~~~k~krVLDIGCGeG~ll~~LAr~g~~~~qVVGVDISeemLe~ArkrLsa 760 (952)
+.+.+... .++..|||++||+|..+..+++.+ .+++|+|+++.+++.|++++..
T Consensus 226 ~~~i~~~~-~~~~~vlD~f~GsGt~~~~a~~~g---~~~~g~e~~~~~~~~a~~r~~~ 279 (297)
T 2zig_A 226 ERLVRMFS-FVGDVVLDPFAGTGTTLIAAARWG---RRALGVELVPRYAQLAKERFAR 279 (297)
T ss_dssp HHHHHHHC-CTTCEEEETTCTTTHHHHHHHHTT---CEEEEEESCHHHHHHHHHHHHH
T ss_pred HHHHHHhC-CCCCEEEECCCCCCHHHHHHHHcC---CeEEEEeCCHHHHHHHHHHHHH
Confidence 34444443 467899999999999999999988 7999999999999999998764
No 298
>3adj_A F21M12.9 protein; HYL1, miRNA processing, RNA binding protein, gene regulation; 3.00A {Arabidopsis thaliana} PDB: 2l2m_A
Probab=96.77 E-value=0.002 Score=56.28 Aligned_cols=66 Identities=21% Similarity=0.306 Sum_probs=47.8
Q ss_pred ChHhHHH---HhccCc-eeEEEeeeeccccCCCCccccCCCCCceEEEeeecCCceeeeccccccchHHHHHHHHHHHHc
Q 002218 17 TPKAIIV---QKFGRN-AQFTVDEVQDVVQNGCPGLAIPQKGPCLYRCSLQLPEFSVVSETFKKKKDAEQSAAEKALEKL 92 (952)
Q Consensus 17 tpka~~~---q~~g~~-~~y~~~ev~~~~~~~~~~~~~~q~~~~~~~c~l~lp~~~v~~~~~~~kkdaeq~aa~~al~kl 92 (952)
.||-.++ |+.|.. -.|++.+.. | |..-| .|.|.+.+.+-.+.+|.=+-||+|||.||+.||++|
T Consensus 5 n~Kt~LqE~~q~~~~~~p~Y~~~~~~-----G------p~h~~-~F~~~v~v~g~~~~~G~G~sKK~Aeq~AA~~al~~L 72 (76)
T 3adj_A 5 LCKNLLQEYAQKMNYAIPLYQCQKVE-----T------LGRVT-QFTCTVEIGGIKYTGAATRTKKDAEISAGRTALLAI 72 (76)
T ss_dssp HHHHHHHHHHHTTTCCCCEEEEEEEE-----C------SSSCE-EEEEEEEETTEEEECCCBSSHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHhCCCCCeEEEeecc-----C------CCCCC-cEEEEEEECCEEEEEeccCCHHHHHHHHHHHHHHHH
Confidence 4666654 555554 478764322 1 22233 899999998866667888999999999999999999
Q ss_pred CC
Q 002218 93 GI 94 (952)
Q Consensus 93 g~ 94 (952)
+-
T Consensus 73 ~~ 74 (76)
T 3adj_A 73 QS 74 (76)
T ss_dssp HC
T ss_pred hh
Confidence 63
No 299
>4fzv_A Putative methyltransferase NSUN4; mterf fold, methyltransferase fold, rRNA methyltransferase, mitochondria, transferase; HET: MSE SAM; 2.00A {Homo sapiens} PDB: 4fp9_A*
Probab=96.76 E-value=0.0035 Score=69.61 Aligned_cols=124 Identities=15% Similarity=0.138 Sum_probs=85.7
Q ss_pred HHHHHhhcCCCCEEEEEcCccchHHHHHhcCCCCCceEEEEeCChHHHHHHHHHHhhhhhcccccCCCCCCCccEEEEEc
Q 002218 704 YALQHIKESCATTLVDFGCGSGSLLDSLLDYPTALEKIVGVDISQKSLSRAAKIIHSKLSKKLDAAVPCTDVKSAVLFDG 783 (952)
Q Consensus 704 fVldlL~~~k~krVLDIGCGeG~ll~~LAr~g~~~~qVVGVDISeemLe~ArkrLsa~la~~~~~l~Pr~~~~nVtf~qG 783 (952)
.+...+...++.+|||+.+|.|.-+..|++.+ ....|+++|+++.-++..+++++...... .....++.+...
T Consensus 139 l~~~~L~~~pg~~VLD~CAaPGGKT~~la~~~-~~~~l~A~D~~~~R~~~l~~~l~r~~~~~------~~~~~~v~v~~~ 211 (359)
T 4fzv_A 139 LPVLALGLQPGDIVLDLCAAPGGKTLALLQTG-CCRNLAANDLSPSRIARLQKILHSYVPEE------IRDGNQVRVTSW 211 (359)
T ss_dssp HHHHHHCCCTTEEEEESSCTTCHHHHHHHHTT-CEEEEEEECSCHHHHHHHHHHHHHHSCTT------TTTSSSEEEECC
T ss_pred HHHHHhCCCCCCEEEEecCCccHHHHHHHHhc-CCCcEEEEcCCHHHHHHHHHHHHHhhhhh------hccCCceEEEeC
Confidence 34555677788999999999999999998876 34689999999999988888775432100 012247889999
Q ss_pred CccccCC-CCCCccEEEE----cc----cccc-------CChh-------HHHHHHHHHHHccCCC-EEEEEecC
Q 002218 784 SITVFDS-RLHGFDIGTC----LE----VIEH-------MEED-------EASQFGNIVLSSFRPR-ILIVSTPN 834 (952)
Q Consensus 784 Da~dLpf-~d~sFDVVVc----ie----VIEH-------L~dD-------~l~~L~eeI~RvLKPG-~LIISTPN 834 (952)
|...++. ..+.||.|++ +. ++.. ...+ .+..+.+...++|||| .++-+|-.
T Consensus 212 D~~~~~~~~~~~fD~VLlDaPCSg~g~g~~r~~~~~~~~~~~~~~~~l~~lQ~~iL~~a~~~lkpGG~LVYsTCS 286 (359)
T 4fzv_A 212 DGRKWGELEGDTYDRVLVDVPCTTDRHSLHEEENNIFKRSRKKERQILPVLQVQLLAAGLLATKPGGHVVYSTCS 286 (359)
T ss_dssp CGGGHHHHSTTCEEEEEEECCCCCHHHHTTCCTTCTTSGGGHHHHHTHHHHHHHHHHHHHHTEEEEEEEEEEESC
T ss_pred chhhcchhccccCCEEEECCccCCCCCcccccChhhhhhCCHHHHHHHHHHHHHHHHHHHhcCCCCcEEEEEeCC
Confidence 9887653 3568999995 32 2211 1111 1234556688999999 77777764
No 300
>2cpn_A TAR RNA-binding protein 2; double-stranded RNA binding domain, DSRBD, DSRM., structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.50.1.1
Probab=96.73 E-value=0.0052 Score=55.58 Aligned_cols=66 Identities=21% Similarity=0.322 Sum_probs=49.6
Q ss_pred CCChHhHHH---HhccCc-eeEEEeeeeccccCCCCccccCCCCCceEEEeeecCCceeeeccccccchHHHHHHHHHHH
Q 002218 15 KLTPKAIIV---QKFGRN-AQFTVDEVQDVVQNGCPGLAIPQKGPCLYRCSLQLPEFSVVSETFKKKKDAEQSAAEKALE 90 (952)
Q Consensus 15 ~~tpka~~~---q~~g~~-~~y~~~ev~~~~~~~~~~~~~~q~~~~~~~c~l~lp~~~v~~~~~~~kkdaeq~aa~~al~ 90 (952)
...||-.++ |+.+-. -.|++.+.. | |...| .|.|.+.+.+. +-+|.-+-||+|||.||+.||+
T Consensus 15 ~~d~Kt~LqE~~Qk~~~~~P~Y~~~~~~-----G------p~h~~-~F~~~v~i~g~-~~~G~G~SKK~Aeq~AA~~AL~ 81 (89)
T 2cpn_A 15 ECNPVGALQELVVQKGWRLPEYTVTQES-----G------PAHRK-EFTMTCRVERF-IEIGSGTSKKLAKRNAAAKMLL 81 (89)
T ss_dssp CCCHHHHHHHHHHHHTCCCCEEEEEEEE-----C------CSSSC-EEEEEEEETTE-EEEEEESSHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHcCCCCCeEEEEeeE-----C------CCCCC-eEEEEEEECCE-EEEeeeCCHHHHHHHHHHHHHH
Confidence 457888775 455554 578764321 1 22334 89999999996 7779999999999999999999
Q ss_pred HcC
Q 002218 91 KLG 93 (952)
Q Consensus 91 klg 93 (952)
+|+
T Consensus 82 ~L~ 84 (89)
T 2cpn_A 82 RVS 84 (89)
T ss_dssp HHH
T ss_pred HHH
Confidence 996
No 301
>2efj_A 3,7-dimethylxanthine methyltransferase; SAM-dependant methyltransferase, SAH, theobromine; HET: SAH 37T; 2.00A {Coffea canephora} PDB: 2eg5_A*
Probab=96.73 E-value=0.0044 Score=69.46 Aligned_cols=108 Identities=14% Similarity=0.044 Sum_probs=69.5
Q ss_pred CCEEEEEcCccchHHHHHhcC----------------CCCCceEEEEeCC-----------hHHHHHHHHHHhhhhhccc
Q 002218 714 ATTLVDFGCGSGSLLDSLLDY----------------PTALEKIVGVDIS-----------QKSLSRAAKIIHSKLSKKL 766 (952)
Q Consensus 714 ~krVLDIGCGeG~ll~~LAr~----------------g~~~~qVVGVDIS-----------eemLe~ArkrLsa~la~~~ 766 (952)
..+|+|+|||+|.++..+... ..+..+|+.-|+- +.+.+..++..
T Consensus 53 ~~~IaDlGCssG~NT~~~v~~ii~~i~~~~~~~~~~~~~pe~~v~~nDLp~NDFN~lF~~L~~~~~~~~~~~-------- 124 (384)
T 2efj_A 53 CFKVGDLGCASGPNTFSTVRDIVQSIDKVGQEKKNELERPTIQIFLNDLFQNDFNSVFKLLPSFYRNLEKEN-------- 124 (384)
T ss_dssp EEEEEEETCCSSHHHHHHHHHHHHHHTCC----------CEEEEEEECCTTSCHHHHHHHHHHHHHHHHHHT--------
T ss_pred ceEEEecCCCCCchHHHHHHHHHHHHHHHhhhcccCCCCCceEEEecCCCccchHHHHhhhhhhHhhhhhhc--------
Confidence 568999999999998755432 1245789999987 33333221110
Q ss_pred ccCCCCCCCccEEEEE---cCccccCCCCCCccEEEEccccccCChhH--------------------------------
Q 002218 767 DAAVPCTDVKSAVLFD---GSITVFDSRLHGFDIGTCLEVIEHMEEDE-------------------------------- 811 (952)
Q Consensus 767 ~~l~Pr~~~~nVtf~q---GDa~dLpf~d~sFDVVVcieVIEHL~dD~-------------------------------- 811 (952)
+...+..|.. |+.-...++.++||+|+++.++||+...+
T Consensus 125 ------g~~~~~~f~~gvpgSFy~rlfp~~S~d~v~Ss~aLHWls~~p~~l~~~~s~~~nkg~i~i~~~sp~~v~~ay~~ 198 (384)
T 2efj_A 125 ------GRKIGSCLIGAMPGSFYSRLFPEESMHFLHSCYCLHWLSQVPSGLVTELGISVNKGCIYSSKASRPPIQKAYLD 198 (384)
T ss_dssp ------CCCTTSEEEEECCSCTTSCCSCTTCEEEEEEESCTTBCSSSCCC------CCCCTTCSSSCTTSCHHHHHHHHH
T ss_pred ------cCCCCceEEEecchhhhhccCCCCceEEEEecceeeecCCCchhhhccccccccCCceEecCCCCHHHHHHHHH
Confidence 0101223444 44445667889999999999999986321
Q ss_pred -----HHHHHHHHHHccCCC-EEEEEecCC
Q 002218 812 -----ASQFGNIVLSSFRPR-ILIVSTPNY 835 (952)
Q Consensus 812 -----l~~L~eeI~RvLKPG-~LIISTPN~ 835 (952)
...|++...+.|+|| .+++++...
T Consensus 199 Qf~~D~~~FL~~Ra~eL~pGG~mvl~~~gr 228 (384)
T 2efj_A 199 QFTKDFTTFLRIHSEELISRGRMLLTFICK 228 (384)
T ss_dssp HHHHHHHHHHHHHHHHEEEEEEEEEEEECC
T ss_pred HHHHHHHHHHHHHHHHhccCCeEEEEEecC
Confidence 112355668999999 777777654
No 302
>1s29_A LA protein; winged helix-turn-helix, autoantigen, RNA-binding, RNA binding protein; 1.60A {Trypanosoma brucei} SCOP: a.4.5.46
Probab=96.70 E-value=0.0011 Score=60.65 Aligned_cols=88 Identities=23% Similarity=0.362 Sum_probs=68.8
Q ss_pred CChHHHHHHHHHHHhhhhcccccccCCCchhhhHHhhhhcCcccccccceEEEeecccccccccccCcccccchHHHHHH
Q 002218 101 PSAEEAWDKLIASVKHLFSNEFLSSQSPLRGHFIAALRRDGDLYGSVPASVIAVCDSKLANLCKLINPKVESSHLLVLTY 180 (952)
Q Consensus 101 ~~~~e~~~~l~~~~~~~f~~e~~~~~~pl~~h~~~~~~r~g~~~g~~p~~~~~~~d~k~~~~ck~~~~~~e~~p~~~~~~ 180 (952)
|-++|.-+.|+.+|.|-|||+=|.-++=|..|+ .++. =|.||+++||.+- |+.++.. | ..+
T Consensus 5 ~~~~~~~~~I~~QvEyYFSd~NL~~D~fL~~~m----~~~~--~G~Vpl~~i~sF~-r~k~lt~--------d----~~~ 65 (92)
T 1s29_A 5 PLSSENKQKLQKQVEFYFSDVNVQRDIFLKGKM----AENA--EGFVSLETLLTFK-RVNSVTT--------D----VKE 65 (92)
T ss_dssp CCCHHHHHHHHHHHHHHTSHHHHTTCHHHHHHH----TTST--TCCEEHHHHTTSH-HHHTTCS--------C----HHH
T ss_pred CCCHHHHHHHHHHHHhhcchhhhccCHHHHHHh----ccCC--CCCEEhHHHhCCh-hHHHHcC--------C----HHH
Confidence 456788899999999999999888887555555 3333 4899999999873 5555543 2 467
Q ss_pred HHHHhhccCCcEEeecCceeeeecCCCC
Q 002218 181 IMRAATRLSEFVVTSEGQLSIWRKDPYP 208 (952)
Q Consensus 181 ~~~a~~~~~~~~~~s~~~~~~~~~~p~~ 208 (952)
|..|.+.++- |.+++++..|+|..|+|
T Consensus 66 i~~al~~S~~-lev~edg~~VRR~~PlP 92 (92)
T 1s29_A 66 VVEAIRPSEK-LVLSEDGLMVRRRDPLP 92 (92)
T ss_dssp HHHHHTTCSS-EEECTTSSEEEESSCCC
T ss_pred HHHHHhhCCe-EEEeCCCCEEeCCCCCC
Confidence 8888887655 89999999999999997
No 303
>1m6e_X S-adenosyl-L-methionnine:salicylic acid carboxyl methyltransferase; rossmann fold, protein-small molecule complex; HET: SAH SAL; 3.00A {Clarkia breweri} SCOP: c.66.1.35
Probab=96.67 E-value=0.0037 Score=69.51 Aligned_cols=113 Identities=11% Similarity=0.028 Sum_probs=77.9
Q ss_pred CCEEEEEcCccchHHHHHhcC---------------CCCCceEEEEeCChHHHHHHHHHHhhhhhcccccCCCCCCCccE
Q 002218 714 ATTLVDFGCGSGSLLDSLLDY---------------PTALEKIVGVDISQKSLSRAAKIIHSKLSKKLDAAVPCTDVKSA 778 (952)
Q Consensus 714 ~krVLDIGCGeG~ll~~LAr~---------------g~~~~qVVGVDISeemLe~ArkrLsa~la~~~~~l~Pr~~~~nV 778 (952)
.-+|+|+||++|..+..+... ..+..+|+.-|+........-+.+.... +..+.-=+
T Consensus 52 ~~~IaDlGCs~G~Nt~~~v~~ii~~i~~~~~~~~~~~~pe~~v~~nDLp~NDFntlF~~L~~~~--------~~~~~~f~ 123 (359)
T 1m6e_X 52 RLAIADLGCSSGPNALFAVTELIKTVEELRKKMGRENSPEYQIFLNDLPGNDFNAIFRSLPIEN--------DVDGVCFI 123 (359)
T ss_dssp EECCEEESCCSSTTTTTGGGTTHHHHHHHHHSSSCSSCCEEEEEEEECTTSCHHHHHTTTTTSC--------SCTTCEEE
T ss_pred ceEEEecCCCCCcchHHHHHHHHHHHHHHHHhcCCCCCCceEEEecCCCchHHHHHHHhcchhc--------ccCCCEEE
Confidence 357999999999988655443 2356899999999888877766543210 00111112
Q ss_pred EEEEcCccccCCCCCCccEEEEccccccCChh-------------------------------HHHHHHHHHHHccCCC-
Q 002218 779 VLFDGSITVFDSRLHGFDIGTCLEVIEHMEED-------------------------------EASQFGNIVLSSFRPR- 826 (952)
Q Consensus 779 tf~qGDa~dLpf~d~sFDVVVcieVIEHL~dD-------------------------------~l~~L~eeI~RvLKPG- 826 (952)
.-+-|+.....++.+++|+|+++.++||+..- +...|++...+.|+||
T Consensus 124 ~gvpgSFy~rlfp~~S~d~v~Ss~aLHWls~~p~~l~~nkg~i~~~~~~p~~v~~ay~~Qf~~D~~~FL~~Ra~EL~pGG 203 (359)
T 1m6e_X 124 NGVPGSFYGRLFPRNTLHFIHSSYSLMWLSQVPIGIESNKGNIYMANTCPQSVLNAYYKQFQEDHALFLRCRAQEVVPGG 203 (359)
T ss_dssp EEEESCSSSCCSCTTCBSCEEEESCTTBCSSCCSCCCCCTTTTSSCSSSCCTTSCCSHHHHHHHHHHHHHHHHHHBCTTC
T ss_pred EecchhhhhccCCCCceEEEEehhhhhhcccCchhhhccCCceEecCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcCCc
Confidence 23445666677889999999999999998631 2345567789999999
Q ss_pred EEEEEecC
Q 002218 827 ILIVSTPN 834 (952)
Q Consensus 827 ~LIISTPN 834 (952)
.++++++.
T Consensus 204 ~mvl~~~g 211 (359)
T 1m6e_X 204 RMVLTILG 211 (359)
T ss_dssp EEEEEEEE
T ss_pred eEEEEEec
Confidence 77777653
No 304
>3adl_A RISC-loading complex subunit tarbp2; TRBP2, miRNA processing, gene regulation-RNA complex; 2.20A {Homo sapiens}
Probab=96.66 E-value=0.0028 Score=57.27 Aligned_cols=69 Identities=19% Similarity=0.228 Sum_probs=51.4
Q ss_pred cCCCChHhHHH---HhccCc-eeEEEeeeeccccCCCCccccCCCCCceEEEeeecCCceeeeccccccchHHHHHHHHH
Q 002218 13 KMKLTPKAIIV---QKFGRN-AQFTVDEVQDVVQNGCPGLAIPQKGPCLYRCSLQLPEFSVVSETFKKKKDAEQSAAEKA 88 (952)
Q Consensus 13 ~~~~tpka~~~---q~~g~~-~~y~~~ev~~~~~~~~~~~~~~q~~~~~~~c~l~lp~~~v~~~~~~~kkdaeq~aa~~a 88 (952)
.....||-.+. |+-|-. -.|++.+.. | |.-.| .|.|.+.+.+. +-+|.-+-||+|||.||+.|
T Consensus 12 ~~~~d~Ks~LqE~~Q~~~~~~P~Y~~~~~~-----G------p~H~~-~F~~~v~v~g~-~~~G~G~SKK~Aeq~AA~~A 78 (88)
T 3adl_A 12 PRGSHEVGALQELVVQKGWRLPEYTVTQES-----G------PAHRK-EFTMTCRVERF-IEIGSGTSKKLAKRNAAAKM 78 (88)
T ss_dssp CTTCCHHHHHHHHHHHTTCCCCEEEEEEEE-----S------CTTSC-EEEEEEEETTE-EEEEEESSHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHcCCCCCEEEEEEeE-----C------CCCCC-eEEEEEEECCE-EEEEeeCCHHHHHHHHHHHH
Confidence 45568888875 455554 578774321 1 22234 79999999986 66799999999999999999
Q ss_pred HHHcCC
Q 002218 89 LEKLGI 94 (952)
Q Consensus 89 l~klg~ 94 (952)
|++|+-
T Consensus 79 L~~L~~ 84 (88)
T 3adl_A 79 LLRVHT 84 (88)
T ss_dssp HHHHHC
T ss_pred HHHHHc
Confidence 999974
No 305
>2ljh_A Double-stranded RNA-specific editase ADAR; DSRBD, DSRBM, editing, hydrolase; NMR {Drosophila melanogaster}
Probab=96.65 E-value=0.0044 Score=58.81 Aligned_cols=70 Identities=19% Similarity=0.203 Sum_probs=52.4
Q ss_pred CCChHhHHHHhccCceeEEEeeeeccccCCCCccccCCCCCceEEEeeecCCceeeeccccccchHHHHHHHHHHHHcCC
Q 002218 15 KLTPKAIIVQKFGRNAQFTVDEVQDVVQNGCPGLAIPQKGPCLYRCSLQLPEFSVVSETFKKKKDAEQSAAEKALEKLGI 94 (952)
Q Consensus 15 ~~tpka~~~q~~g~~~~y~~~ev~~~~~~~~~~~~~~q~~~~~~~c~l~lp~~~v~~~~~~~kkdaeq~aa~~al~klg~ 94 (952)
...||.++. .|-++-.|++.+.. | |.--| .|.|.+.+.+... +|.-+-||+|||.||+.||++|+-
T Consensus 36 ~kd~Ks~LQ-E~~q~p~Y~~v~~~-----G------p~H~k-~F~v~V~v~g~~~-~G~G~SKK~AEq~AA~~AL~~L~~ 101 (114)
T 2ljh_A 36 PKNTVAMLN-ELRHGLIYKLESQT-----G------PVHAP-LFTISVEVDGQKY-LGQGRSKKVARIEAAATALRSFIQ 101 (114)
T ss_dssp CSCHHHHHH-HHCSCCEEEEEEEE-----C------CSSSC-EEEEEEEETTEEE-EEEESSHHHHHHHHHHHHHHHHCC
T ss_pred CCCHHHHHH-HHccCCeEEEEEee-----C------CCCCC-eEEEEEEECCEEE-EeeeCCHHHHHHHHHHHHHHHHHc
Confidence 357887765 45666788775322 1 22233 8999999988766 899999999999999999999986
Q ss_pred CCCC
Q 002218 95 DPSP 98 (952)
Q Consensus 95 ~~~~ 98 (952)
.+..
T Consensus 102 ~~~~ 105 (114)
T 2ljh_A 102 FKDG 105 (114)
T ss_dssp CTTC
T ss_pred CCCC
Confidence 5553
No 306
>1x48_A Interferon-induced, double-stranded RNA- activated protein kinase; structure genomics, DSRM domain, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.50.1.1
Probab=96.64 E-value=0.0012 Score=59.52 Aligned_cols=68 Identities=19% Similarity=0.183 Sum_probs=49.5
Q ss_pred ChHhHHH---HhccCceeEEEeeeeccccCCCCccccCCCCCceEEEeeecCCceeeeccccccchHHHHHHHHHHHHcC
Q 002218 17 TPKAIIV---QKFGRNAQFTVDEVQDVVQNGCPGLAIPQKGPCLYRCSLQLPEFSVVSETFKKKKDAEQSAAEKALEKLG 93 (952)
Q Consensus 17 tpka~~~---q~~g~~~~y~~~ev~~~~~~~~~~~~~~q~~~~~~~c~l~lp~~~v~~~~~~~kkdaeq~aa~~al~klg 93 (952)
.||-+++ |+-|....|+ ++ .| |.-.|..|.|.+.+.+...-+|.-+-||+|||.||+.||++|+
T Consensus 7 d~Kt~LqE~~Q~~~~~~~Y~-~~------~G------p~H~~~~F~~~v~v~g~~~~~G~G~SKK~Aeq~AA~~AL~~L~ 73 (88)
T 1x48_A 7 GYIGLVNSFAQKKKLSVNYE-QC------EP------NSELPQRFICKCKIGQTMYGTGSGVTKQEAKQLAAKEAYQKLL 73 (88)
T ss_dssp CHHHHHHHHHHHTTCCEEEE-EC------CC------SSSSSCCEEEEEEESSCEEEEEEESSHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHcCCCCeeE-Ee------eC------CCCCCceEEEEEEECCEEEEEeecCCHHHHHHHHHHHHHHHHH
Confidence 6787765 4445555776 21 11 2233336999999988666678889999999999999999998
Q ss_pred CCCC
Q 002218 94 IDPS 97 (952)
Q Consensus 94 ~~~~ 97 (952)
-.|.
T Consensus 74 ~~~~ 77 (88)
T 1x48_A 74 KSPP 77 (88)
T ss_dssp HSCC
T ss_pred hcCC
Confidence 7655
No 307
>3adg_A F21M12.9 protein; HYL1, miRNA processing mechanism, RNA binding protein, gene regulation; 1.70A {Arabidopsis thaliana} PDB: 3adi_A
Probab=96.54 E-value=0.0023 Score=55.41 Aligned_cols=64 Identities=28% Similarity=0.299 Sum_probs=47.4
Q ss_pred ChHhHHH---HhccCc-eeEEEeeeeccccCCCCccccCCCCCceEEEeeecCCceeeeccc-cccchHHHHHHHHHHHH
Q 002218 17 TPKAIIV---QKFGRN-AQFTVDEVQDVVQNGCPGLAIPQKGPCLYRCSLQLPEFSVVSETF-KKKKDAEQSAAEKALEK 91 (952)
Q Consensus 17 tpka~~~---q~~g~~-~~y~~~ev~~~~~~~~~~~~~~q~~~~~~~c~l~lp~~~v~~~~~-~~kkdaeq~aa~~al~k 91 (952)
.||-.++ |+.|-. -.|++.+ +. |...| .|.|.+.+.+..+.+|.= +-||+|||.||+.||++
T Consensus 4 d~Kt~LqE~~q~~~~~~p~Y~~~~--~G----------p~h~~-~F~~~v~v~g~~~~~G~G~~sKK~Aeq~AA~~al~~ 70 (73)
T 3adg_A 4 VFKSRLQEYAQKYKLPTPVYEIVK--EG----------PSHKS-LFQSTVILDGVRYNSLPGFFNRKAAEQSAAEVALRE 70 (73)
T ss_dssp SHHHHHHHHHHHTTCCCCEEEEEE--ES----------STTSC-EEEEEEEETTEEEECCSCBSSHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHcCCCCCEEEEEe--EC----------CCCCC-eEEEEEEECCEEEEeeeccCCHHHHHHHHHHHHHHH
Confidence 4666654 555655 4787764 21 23344 899999998866667887 89999999999999999
Q ss_pred cC
Q 002218 92 LG 93 (952)
Q Consensus 92 lg 93 (952)
|+
T Consensus 71 L~ 72 (73)
T 3adg_A 71 LA 72 (73)
T ss_dssp HT
T ss_pred hh
Confidence 85
No 308
>2b7t_A Double-stranded RNA-specific editase 1; RNA editing, RNA-binding protein, hydrolase; NMR {Rattus norvegicus} SCOP: d.50.1.1 PDB: 2l3c_A
Probab=96.53 E-value=0.0022 Score=55.61 Aligned_cols=65 Identities=26% Similarity=0.331 Sum_probs=46.8
Q ss_pred CChHhHHH---HhccCceeEEEeeeeccccCCCCccccCCCCCceEEEeeecCCceeeeccccccchHHHHHHHHHHHHc
Q 002218 16 LTPKAIIV---QKFGRNAQFTVDEVQDVVQNGCPGLAIPQKGPCLYRCSLQLPEFSVVSETFKKKKDAEQSAAEKALEKL 92 (952)
Q Consensus 16 ~tpka~~~---q~~g~~~~y~~~ev~~~~~~~~~~~~~~q~~~~~~~c~l~lp~~~v~~~~~~~kkdaeq~aa~~al~kl 92 (952)
..||-.++ |+ ...-.|++.+.. | |...| .|.|.+.+.+... +|.-+-||+|||.||+.||++|
T Consensus 4 ~d~Ks~Lqe~~q~-~~~p~Y~~~~~~-----G------p~h~~-~F~~~v~v~g~~~-~G~G~SKK~Aeq~AA~~al~~L 69 (73)
T 2b7t_A 4 VLPKNALMQLNEI-KPGLQYMLLSQT-----G------PVHAP-LFVMSVEVNGQVF-EGSGPTKKKAKLHAAEKALRSF 69 (73)
T ss_dssp SSSHHHHHHHHHH-CSCCEEEEEEEE-----C------SSSSC-EEEEEEESSSSEE-EEEESSHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHcC-CCCceEEEEEee-----C------CCCCC-eEEEEEEECCEEE-EeecCCHHHHHHHHHHHHHHHH
Confidence 35666654 44 334578764321 1 22334 8999999998664 8999999999999999999998
Q ss_pred CC
Q 002218 93 GI 94 (952)
Q Consensus 93 g~ 94 (952)
..
T Consensus 70 ~~ 71 (73)
T 2b7t_A 70 VQ 71 (73)
T ss_dssp HT
T ss_pred hc
Confidence 64
No 309
>2dmy_A Spermatid perinuclear RNA-binding protein; DSRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.50.1.1
Probab=96.47 E-value=0.0035 Score=57.52 Aligned_cols=71 Identities=18% Similarity=0.235 Sum_probs=51.8
Q ss_pred cCCCChHhHH---HHhccCceeEEEeeeeccccCCCCccccCCCCCceEEEeeecCCceeeeccccccchHHHHHHHHHH
Q 002218 13 KMKLTPKAII---VQKFGRNAQFTVDEVQDVVQNGCPGLAIPQKGPCLYRCSLQLPEFSVVSETFKKKKDAEQSAAEKAL 89 (952)
Q Consensus 13 ~~~~tpka~~---~q~~g~~~~y~~~ev~~~~~~~~~~~~~~q~~~~~~~c~l~lp~~~v~~~~~~~kkdaeq~aa~~al 89 (952)
.....||-.+ .|+. ..-.|++.+.. | |..-| .|.|.+.+.+... +|.=+-||+|||.||+.||
T Consensus 13 ~~~~d~Kt~LqE~~Q~~-~~p~Y~~~~~~-----G------p~H~~-~F~~~v~v~g~~~-~G~G~SKK~Aeq~AA~~aL 78 (97)
T 2dmy_A 13 SKAIDLMNALMRLNQIR-PGLQYKLLSQS-----G------PVHAP-VFTMSVDVDGTTY-EASGPSKKTAKLHVAVKVL 78 (97)
T ss_dssp CCSSSCTHHHHHHHHHS-CSCCCEEEEEE-----S------CSSSC-EEEEEEEETTEEE-EEEESSHHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHhcC-CCceEEEEEee-----C------CCCCC-eEEEEEEECCEEE-EEeeCCHHHHHHHHHHHHH
Confidence 3445688776 4664 34568765332 1 22234 8999999988665 8999999999999999999
Q ss_pred HHcCCCCC
Q 002218 90 EKLGIDPS 97 (952)
Q Consensus 90 ~klg~~~~ 97 (952)
++|+.+..
T Consensus 79 ~~L~~~~~ 86 (97)
T 2dmy_A 79 QAMGYPTG 86 (97)
T ss_dssp HHHTCCCS
T ss_pred HHhCCCCc
Confidence 99997443
No 310
>2l2n_A Hyponastic leave 1; DSRBD, miRNA, RNA binding protein, plant protein; NMR {Arabidopsis thaliana}
Probab=96.40 E-value=0.0047 Score=57.24 Aligned_cols=69 Identities=28% Similarity=0.292 Sum_probs=48.7
Q ss_pred cCCCChHhHHH---HhccCc-eeEEEeeeeccccCCCCccccCCCCCceEEEeeecCCceeeeccc-cccchHHHHHHHH
Q 002218 13 KMKLTPKAIIV---QKFGRN-AQFTVDEVQDVVQNGCPGLAIPQKGPCLYRCSLQLPEFSVVSETF-KKKKDAEQSAAEK 87 (952)
Q Consensus 13 ~~~~tpka~~~---q~~g~~-~~y~~~ev~~~~~~~~~~~~~~q~~~~~~~c~l~lp~~~v~~~~~-~~kkdaeq~aa~~ 87 (952)
++...||..++ |+.|.. -.|++.+ + | |..-| .|.|.+.+.+..+.+|.- +-||+|||.||+.
T Consensus 14 ~~~~d~Kt~LqE~~Q~~~~~~P~Y~~~~--~----G------p~H~~-~F~~~V~v~g~~~~~G~G~~SKK~Aeq~AA~~ 80 (103)
T 2l2n_A 14 SNCYVFKSRLQEYAQKYKLPTPVYEIVK--E----G------PSHKS-LFQSTVILDGVRYNSLPGFFNRKAAEQSAAEV 80 (103)
T ss_dssp -----CTTHHHHHHHHTTCCCCEEEEEE--E----S------CSSSC-EEEEEEEETTEEEECCSCBSSHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHcCCCCCeEEEEe--E----c------CCCCC-eEEEEEEECCEEEEEeecCCCHHHHHHHHHHH
Confidence 44556777664 566655 4898764 2 2 22334 899999999876677887 8999999999999
Q ss_pred HHHHcCC
Q 002218 88 ALEKLGI 94 (952)
Q Consensus 88 al~klg~ 94 (952)
||++|+-
T Consensus 81 AL~~L~~ 87 (103)
T 2l2n_A 81 ALRELAK 87 (103)
T ss_dssp HHHHHHH
T ss_pred HHHHHhc
Confidence 9999973
No 311
>3ufb_A Type I restriction-modification system methyltran subunit; methyltransferase activity, transferase; 1.80A {Vibrio vulnificus}
Probab=96.29 E-value=0.015 Score=67.35 Aligned_cols=130 Identities=12% Similarity=0.193 Sum_probs=81.9
Q ss_pred hhcCCchhHHHHHHHHHHHhhcCCCCEEEEEcCccchHHHHHhc----CCCC--------CceEEEEeCChHHHHHHHHH
Q 002218 690 QALFSPPLSKQRVEYALQHIKESCATTLVDFGCGSGSLLDSLLD----YPTA--------LEKIVGVDISQKSLSRAAKI 757 (952)
Q Consensus 690 ~~~F~PPL~~QR~efVldlL~~~k~krVLDIGCGeG~ll~~LAr----~g~~--------~~qVVGVDISeemLe~Arkr 757 (952)
..+|.|. .- .+++++++.+..+.+|+|-.||+|.|+....+ .... ...++|+|+++.+...|+-+
T Consensus 197 GqfyTP~-~V--v~lmv~l~~p~~~~~I~DPacGsGgfL~~a~~~l~~~~~~~~~~~~~~~~~i~G~E~~~~~~~la~mN 273 (530)
T 3ufb_A 197 GEFYTPR-PV--VRFMVEVMDPQLGESVLDPACGTGGFLVEAFEHLERQCKTVEDREVLQESSIFGGEAKSLPYLLVQMN 273 (530)
T ss_dssp CCCCCCH-HH--HHHHHHHHCCCTTCCEEETTCTTTHHHHHHHHHHHTTCCSHHHHHHHHTCCEEEECCSHHHHHHHHHH
T ss_pred ceECCcH-HH--HHHHHHhhccCCCCEEEeCCCCcchHHHHHHHHHHHhccchhHHHHHhhhhhhhhhccHHHHHHHHHH
Confidence 3455553 22 34777888887888999999999999865543 2110 14699999999999999765
Q ss_pred HhhhhhcccccCCCCCCCccEEEEEcCccccCC----CCCCccEEEEcccc---------ccCC-----hhHHHHHHHHH
Q 002218 758 IHSKLSKKLDAAVPCTDVKSAVLFDGSITVFDS----RLHGFDIGTCLEVI---------EHME-----EDEASQFGNIV 819 (952)
Q Consensus 758 Lsa~la~~~~~l~Pr~~~~nVtf~qGDa~dLpf----~d~sFDVVVcieVI---------EHL~-----dD~l~~L~eeI 819 (952)
+--+ +.....+..+|....+. ....||+|++.==+ ...+ .+..-.|...+
T Consensus 274 l~lh------------g~~~~~I~~~dtL~~~~~~~~~~~~fD~Il~NPPf~~~~~~~~~~~~~~~~~~~~~~~~Fl~~~ 341 (530)
T 3ufb_A 274 LLLH------------GLEYPRIDPENSLRFPLREMGDKDRVDVILTNPPFGGEEEKGILGNFPEDMQTAETAMLFLQLI 341 (530)
T ss_dssp HHHH------------TCSCCEEECSCTTCSCGGGCCGGGCBSEEEECCCSSCBCCHHHHTTSCGGGCCCBHHHHHHHHH
T ss_pred HHhc------------CCccccccccccccCchhhhcccccceEEEecCCCCccccccccccCchhcccchhHHHHHHHH
Confidence 4211 22234566777655433 23479999994221 1111 11223556667
Q ss_pred HHccC-------CC-EEEEEecC
Q 002218 820 LSSFR-------PR-ILIVSTPN 834 (952)
Q Consensus 820 ~RvLK-------PG-~LIISTPN 834 (952)
.+.|| || .+.+.+|+
T Consensus 342 l~~Lk~~~~~l~~gGr~avVlP~ 364 (530)
T 3ufb_A 342 MRKLKRPGHGSDNGGRAAVVVPN 364 (530)
T ss_dssp HHHBCCTTSSSSSCCEEEEEEEH
T ss_pred HHHhhhhhhccCCCceEEEEecc
Confidence 88887 55 77777775
No 312
>1uil_A Double-stranded RNA-binding motif; structural genomics, DSRM, riken structural genomics/proteomics initiative, RSGI RNA binding protein; NMR {Mus musculus} SCOP: d.50.1.1 PDB: 2rs7_A
Probab=96.24 E-value=0.0065 Score=57.30 Aligned_cols=64 Identities=23% Similarity=0.217 Sum_probs=46.1
Q ss_pred ChHhHHH---HhccCceeEEEeeeeccccCCCCccccCCCCCceEEEeeecC----Cce-eeeccccccchHHHHHHHHH
Q 002218 17 TPKAIIV---QKFGRNAQFTVDEVQDVVQNGCPGLAIPQKGPCLYRCSLQLP----EFS-VVSETFKKKKDAEQSAAEKA 88 (952)
Q Consensus 17 tpka~~~---q~~g~~~~y~~~ev~~~~~~~~~~~~~~q~~~~~~~c~l~lp----~~~-v~~~~~~~kkdaeq~aa~~a 88 (952)
.||-.++ |+-|..-.|+++|. | |..-| .|.|.+.+. +.. +.+|.-+-||+|||.||+.|
T Consensus 27 d~Kt~LqE~~Qk~~~~p~Y~~~~~------G------p~H~~-~F~~~V~v~~~~~~~~~~~~G~G~SKK~AEq~AA~~A 93 (113)
T 1uil_A 27 NAKARLNQYFQKEKIQGEYKYTQV------G------PDHNR-SFIAEMTIYIKQLGRRIFAREHGSNKKLAAQSCALSL 93 (113)
T ss_dssp HHHHHHHHHHHHSCCCCCCEEEEE------S------CSTTC-EEEEEEEEEETTTTEEEEEECCCSSHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHCCCCCeEEEeeE------C------CCCCC-cEEEEEEEeeeccCCEEEEEEeeCCHHHHHHHHHHHH
Confidence 6787765 56565667875431 1 23344 888888886 444 44588999999999999999
Q ss_pred HHHcC
Q 002218 89 LEKLG 93 (952)
Q Consensus 89 l~klg 93 (952)
|++|.
T Consensus 94 L~~L~ 98 (113)
T 1uil_A 94 VRQLY 98 (113)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 99875
No 313
>1qu6_A Protein kinase PKR; dsRNA-binding domain, solution structure, transferase; NMR {Homo sapiens} SCOP: d.50.1.1 d.50.1.1
Probab=96.20 E-value=0.011 Score=59.27 Aligned_cols=68 Identities=19% Similarity=0.170 Sum_probs=49.5
Q ss_pred ChHhHHH---HhccCceeEEEeeeeccccCCCCccccCCCCCceEEEeeecCCceeeeccccccchHHHHHHHHHHHHcC
Q 002218 17 TPKAIIV---QKFGRNAQFTVDEVQDVVQNGCPGLAIPQKGPCLYRCSLQLPEFSVVSETFKKKKDAEQSAAEKALEKLG 93 (952)
Q Consensus 17 tpka~~~---q~~g~~~~y~~~ev~~~~~~~~~~~~~~q~~~~~~~c~l~lp~~~v~~~~~~~kkdaeq~aa~~al~klg 93 (952)
-||-+++ |+.|..-.|++.+ +. | |..-| .|.|.+.+.+..+.+|.-+-||+|||.||+.||++|.
T Consensus 14 n~ks~LqE~~q~~~~~p~Y~~~~--~~------G---p~h~~-~F~~~v~v~g~~~~~G~G~sKK~Aeq~AA~~al~~L~ 81 (179)
T 1qu6_A 14 FFMEELNTYRQKQGVVLKYQELP--NS------G---PPHDR-RFTFQVIIDGREFPEGEGRSKKEAKNAAAKLAVEILN 81 (179)
T ss_dssp SHHHHHHHHHHHHTCCCEEEEEE--SC------B---TTTBC-CEEEEEESSSSCCCEEECCSSHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHhCCCCCeEEEee--cc------C---CCCCC-eEEEEEEECCEEEEecCCCCHHHHHHHHHHHHHHHHh
Confidence 4777764 5666667787542 11 1 22223 7999999988766678889999999999999999997
Q ss_pred CCC
Q 002218 94 IDP 96 (952)
Q Consensus 94 ~~~ 96 (952)
-.+
T Consensus 82 ~~~ 84 (179)
T 1qu6_A 82 KEK 84 (179)
T ss_dssp SCC
T ss_pred ccc
Confidence 543
No 314
>1whn_A Hypothetical protein riken cDNA 2310016K04; double-stranded RNA binding domain, DSRBD, DSRM, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.50.1.1
Probab=96.18 E-value=0.0073 Score=58.30 Aligned_cols=68 Identities=22% Similarity=0.251 Sum_probs=51.2
Q ss_pred CCCChHhHHH---HhccCce-eEEEeeeeccccCCCCccccCCCCCceEEEeeecCCceeeeccc-cccchHHHHHHHHH
Q 002218 14 MKLTPKAIIV---QKFGRNA-QFTVDEVQDVVQNGCPGLAIPQKGPCLYRCSLQLPEFSVVSETF-KKKKDAEQSAAEKA 88 (952)
Q Consensus 14 ~~~tpka~~~---q~~g~~~-~y~~~ev~~~~~~~~~~~~~~q~~~~~~~c~l~lp~~~v~~~~~-~~kkdaeq~aa~~a 88 (952)
....||-++. |+-|... .|++.+. . ..| .|.|.+.+.+...-+|.= +-||+|||.||+.|
T Consensus 24 ~~~d~Kt~LQE~~Qk~~~~~P~Y~~v~~----~----------H~~-~F~v~V~v~g~~~g~G~G~~SKK~AEQ~AA~~A 88 (128)
T 1whn_A 24 PQITPKMCLLEWCRREKLPQPVYETVQR----T----------IDR-MFCSVVTVAEQKYQSTLWDKSKKLAEQTAAIVC 88 (128)
T ss_dssp TTCCHHHHHHHHHHHTTCCCCCCCEEEC----S----------SSC-CEEEEEEETTEEEEESSCBSSHHHHHHHHHHHH
T ss_pred cCCCHHHHHHHHHHHcCCCCCeEEEEee----c----------CCC-cEEEEEEECCEEEEEEeccCCHHHHHHHHHHHH
Confidence 3467888775 4555543 7877643 1 122 799999998866667888 99999999999999
Q ss_pred HHHcCCCC
Q 002218 89 LEKLGIDP 96 (952)
Q Consensus 89 l~klg~~~ 96 (952)
|++|+...
T Consensus 89 L~~L~~~~ 96 (128)
T 1whn_A 89 LRSQGLPE 96 (128)
T ss_dssp HHHHTCSS
T ss_pred HHHHhccc
Confidence 99998643
No 315
>2khx_A Ribonuclease 3; drosha, RNA binding domain, hydrolase, gene regulation, NUCL protein, gene regulation,nuclear protein; NMR {Homo sapiens}
Probab=96.17 E-value=0.0024 Score=57.29 Aligned_cols=38 Identities=24% Similarity=0.187 Sum_probs=33.8
Q ss_pred eEEEeeecCCceeeeccccccchHHHHHHHHHHHHcCC
Q 002218 57 LYRCSLQLPEFSVVSETFKKKKDAEQSAAEKALEKLGI 94 (952)
Q Consensus 57 ~~~c~l~lp~~~v~~~~~~~kkdaeq~aa~~al~klg~ 94 (952)
.|.|.+.+.+-.+.+|.-+-||+|||.||+.||++|+-
T Consensus 39 ~F~v~V~v~g~~~~~G~G~SKK~AEq~AA~~AL~~L~~ 76 (85)
T 2khx_A 39 TYTVAVYFKGERIGCGKGPSIQQAEMGAAMDALEKYNF 76 (85)
T ss_dssp CEEEEEEETTEECCCEEESSHHHHHHHHHHHHHTTCCS
T ss_pred cEEEEEEECCEEEEEEeeCCHHHHHHHHHHHHHHHHhH
Confidence 79999999886666788999999999999999999864
No 316
>2wk1_A NOVP; transferase, O-methyltransferase, novobiocin, TYLF superfamily; HET: SAH; 1.40A {Streptomyces caeruleus}
Probab=96.05 E-value=0.019 Score=61.73 Aligned_cols=118 Identities=10% Similarity=-0.004 Sum_probs=75.3
Q ss_pred HHHHHHHHHHhh----cCCCCEEEEEcCccchHHHHHhcC----CCCCceEEEEeCChH---------------------
Q 002218 699 KQRVEYALQHIK----ESCATTLVDFGCGSGSLLDSLLDY----PTALEKIVGVDISQK--------------------- 749 (952)
Q Consensus 699 ~QR~efVldlL~----~~k~krVLDIGCGeG~ll~~LAr~----g~~~~qVVGVDISee--------------------- 749 (952)
.+|...+..+++ ...++.|||+|+..|..+..|+.. +.+..+|+++|..+.
T Consensus 88 ~~r~~~L~~l~~~v~~~~~pg~IlEiGv~~G~Sai~ma~~l~~~g~~~~kI~~~DtfeG~pe~~~~~~~~d~~~~~~~~~ 167 (282)
T 2wk1_A 88 IKRLENIRQCVEDVIGNNVPGDLVETGVWRGGACILMRGILRAHDVRDRTVWVADSFQGIPDVGEDGYAGDRKMALHRRN 167 (282)
T ss_dssp HHHHHHHHHHHHHHHHTTCCCEEEEECCTTSHHHHHHHHHHHHTTCCSCCEEEEECSSCSCCCCTTSCHHHHHHCGGGGH
T ss_pred HHHHHHHHHHHHHHHhcCCCCcEEEeecCchHHHHHHHHHhHhcCCCCCEEEEEECCCCCCccccccccccccccccccc
Confidence 456666555443 346789999999999988877642 112378999996431
Q ss_pred -----HHHHHHHHHhhhhhcccccCCCCCC-CccEEEEEcCcccc-CC-CCCCccEEEEccccccCChhHHHHHHHHHHH
Q 002218 750 -----SLSRAAKIIHSKLSKKLDAAVPCTD-VKSAVLFDGSITVF-DS-RLHGFDIGTCLEVIEHMEEDEASQFGNIVLS 821 (952)
Q Consensus 750 -----mLe~ArkrLsa~la~~~~~l~Pr~~-~~nVtf~qGDa~dL-pf-~d~sFDVVVcieVIEHL~dD~l~~L~eeI~R 821 (952)
.++.+++++... +. ..+|+++.|++.+. +. ....||+|..=.- ........ .+.+..
T Consensus 168 ~~~~~~~~~ar~n~~~~-----------gl~~~~I~li~Gda~etL~~~~~~~~d~vfIDaD---~y~~~~~~-Le~~~p 232 (282)
T 2wk1_A 168 SVLAVSEEEVRRNFRNY-----------DLLDEQVRFLPGWFKDTLPTAPIDTLAVLRMDGD---LYESTWDT-LTNLYP 232 (282)
T ss_dssp HHHCCCHHHHHHHHHHT-----------TCCSTTEEEEESCHHHHSTTCCCCCEEEEEECCC---SHHHHHHH-HHHHGG
T ss_pred ccchhHHHHHHHHHHHc-----------CCCcCceEEEEeCHHHHHhhCCCCCEEEEEEcCC---ccccHHHH-HHHHHh
Confidence 355666665421 11 25899999999763 32 2467999876432 22222333 456899
Q ss_pred ccCCCEEEEE
Q 002218 822 SFRPRILIVS 831 (952)
Q Consensus 822 vLKPG~LIIS 831 (952)
.|+||.+|+.
T Consensus 233 ~L~pGGiIv~ 242 (282)
T 2wk1_A 233 KVSVGGYVIV 242 (282)
T ss_dssp GEEEEEEEEE
T ss_pred hcCCCEEEEE
Confidence 9999955554
No 317
>1whq_A RNA helicase A; double-stranded RNA binding domain, DSRBD, DSRM, riken structural genomics/proteomics initiative, RSGI, structural genomics; NMR {Mus musculus} SCOP: d.50.1.1 PDB: 2rs6_A
Probab=96.05 E-value=0.0098 Score=54.86 Aligned_cols=65 Identities=17% Similarity=0.168 Sum_probs=48.0
Q ss_pred CChHhHHH---HhccCceeEEEeeeeccccCCCCccccCCCCCceEEEeeecCCc-eeeeccccccchHHHHHHHHHHHH
Q 002218 16 LTPKAIIV---QKFGRNAQFTVDEVQDVVQNGCPGLAIPQKGPCLYRCSLQLPEF-SVVSETFKKKKDAEQSAAEKALEK 91 (952)
Q Consensus 16 ~tpka~~~---q~~g~~~~y~~~ev~~~~~~~~~~~~~~q~~~~~~~c~l~lp~~-~v~~~~~~~kkdaeq~aa~~al~k 91 (952)
..||-.++ |+-+..-.|+++| +. |..- -.|.|.+.+.++ .+.+|.-+-||+|||.||+.||++
T Consensus 6 ~d~Kt~LqE~~Qk~~~~P~Y~~~~--~G----------p~H~-~~F~~~V~v~g~~~~~~G~G~SKK~Aeq~AA~~AL~~ 72 (99)
T 1whq_A 6 SGIKNFLYAWCGKRKMTPAYEIRA--VG----------NKNR-QKFMCEVRVEGFNYAGMGNSTNKKDAQSNAARDFVNY 72 (99)
T ss_dssp CSSHHHHHHHHHHTTCCCEEEEEE--EE----------CSSS-EEEEEEEECTTCSCCEEEEESSHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHCCCCCeEEEee--ec----------CCCC-CeEEEEEEECCeEEEEEeccCCHHHHHHHHHHHHHHH
Confidence 35776664 3446667898832 11 1223 389999999995 666799999999999999999999
Q ss_pred cC
Q 002218 92 LG 93 (952)
Q Consensus 92 lg 93 (952)
|+
T Consensus 73 L~ 74 (99)
T 1whq_A 73 LV 74 (99)
T ss_dssp HH
T ss_pred HH
Confidence 85
No 318
>1x47_A DGCR8 protein; structural genomics, DSRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.50.1.1
Probab=95.89 E-value=0.0081 Score=55.20 Aligned_cols=69 Identities=22% Similarity=0.135 Sum_probs=51.4
Q ss_pred cCCCChHhHHH---HhccCc-eeEEEeeeeccccCCCCccccCCCCCceEEEeeecCCceeeeccccccchHHHHHHHHH
Q 002218 13 KMKLTPKAIIV---QKFGRN-AQFTVDEVQDVVQNGCPGLAIPQKGPCLYRCSLQLPEFSVVSETFKKKKDAEQSAAEKA 88 (952)
Q Consensus 13 ~~~~tpka~~~---q~~g~~-~~y~~~ev~~~~~~~~~~~~~~q~~~~~~~c~l~lp~~~v~~~~~~~kkdaeq~aa~~a 88 (952)
+...+||-+++ |+-|.. -.|++.+. .|. . | .|.|.+.+.+-.+.+|.-+-||+|||.||+.|
T Consensus 13 ~~~kd~Kt~LqE~~Q~~~~~~P~Y~~~~~-----~Gp------~--~-~F~~~V~v~g~~~~~G~G~SKK~Aeq~AA~~A 78 (98)
T 1x47_A 13 PNGKSEVCILHEYMQRVLKVRPVYNFFEC-----ENP------S--E-PFGASVTIDGVTYGSGTASSKKLAKNKAARAT 78 (98)
T ss_dssp TTCCCHHHHHHHHHHHHTCSCCEEEEEEC-----SSS------S--C-CEEEEEEETTEEEEEEEESSHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHcCCCCCeEEEEEe-----ECC------C--C-cEEEEEEECCEEEEEeeeCCHHHHHHHHHHHH
Confidence 35568888775 455554 47877532 121 1 3 79999999886667788999999999999999
Q ss_pred HHHcCCC
Q 002218 89 LEKLGID 95 (952)
Q Consensus 89 l~klg~~ 95 (952)
|++|+-.
T Consensus 79 L~~L~~~ 85 (98)
T 1x47_A 79 LEILIPD 85 (98)
T ss_dssp HHHHCSS
T ss_pred HHHHHhh
Confidence 9999843
No 319
>3eld_A Methyltransferase; flavivirus, RNA capping, guanylyltransfer viral enzyme structure; HET: SFG; 1.90A {Wesselsbron virus} PDB: 3elu_A* 3elw_A* 3ely_A* 3emb_A* 3emd_A*
Probab=95.77 E-value=0.0073 Score=65.71 Aligned_cols=102 Identities=13% Similarity=0.087 Sum_probs=59.1
Q ss_pred CCCEEEEEcCccchHHHHHhcCCCCCceEEEEeCChHHHHHHHHHHhhhhhcccccCCCCCCCccEEEEEcCccccCCCC
Q 002218 713 CATTLVDFGCGSGSLLDSLLDYPTALEKIVGVDISQKSLSRAAKIIHSKLSKKLDAAVPCTDVKSAVLFDGSITVFDSRL 792 (952)
Q Consensus 713 k~krVLDIGCGeG~ll~~LAr~g~~~~qVVGVDISeemLe~ArkrLsa~la~~~~~l~Pr~~~~nVtf~qGDa~dLpf~d 792 (952)
++.+||||||+.|.++..+++.. ....|+|+|+...+..... .. ..... ++......+....+..
T Consensus 81 ~g~~vlDLGaaPGgWsqva~~~~-gv~sV~Gvdlg~~~~~~P~------~~-------~~~~~-~iv~~~~~~di~~l~~ 145 (300)
T 3eld_A 81 ITGRVLDLGCGRGGWSYYAAAQK-EVMSVKGYTLGIEGHEKPI------HM-------QTLGW-NIVKFKDKSNVFTMPT 145 (300)
T ss_dssp CCEEEEEETCTTCHHHHHHHTST-TEEEEEEECCCCTTSCCCC------CC-------CBTTG-GGEEEECSCCTTTSCC
T ss_pred CCCEEEEcCCCCCHHHHHHHHhc-CCceeeeEEeccccccccc------cc-------cccCC-ceEEeecCceeeecCC
Confidence 56899999999999999999764 2467999999764311100 00 00011 2222233333233445
Q ss_pred CCccEEEEccccccCCh---hH--HHHHHHHHHHccCCC-EEEE
Q 002218 793 HGFDIGTCLEVIEHMEE---DE--ASQFGNIVLSSFRPR-ILIV 830 (952)
Q Consensus 793 ~sFDVVVcieVIEHL~d---D~--l~~L~eeI~RvLKPG-~LII 830 (952)
..+|+|+|-.. .+-.. |. ...+.+.+..+|+|| .-++
T Consensus 146 ~~~DlVlsD~A-PnsG~~~~D~~rs~~LL~~A~~~LkpG~G~FV 188 (300)
T 3eld_A 146 EPSDTLLCDIG-ESSSNPLVERDRTMKVLENFERWKHVNTENFC 188 (300)
T ss_dssp CCCSEEEECCC-CCCSSHHHHHHHHHHHHHHHHHHCCTTCCEEE
T ss_pred CCcCEEeecCc-CCCCCHHHHHHHHHHHHHHHHHHhcCCCCcEE
Confidence 78999999433 33221 11 122355568899998 4444
No 320
>3tka_A Ribosomal RNA small subunit methyltransferase H; HET: SAM CTN PG4; 2.25A {Escherichia coli}
Probab=95.67 E-value=0.0086 Score=66.35 Aligned_cols=81 Identities=14% Similarity=0.131 Sum_probs=63.0
Q ss_pred HHHHHhhcCCCCEEEEEcCccchHHHHHhcCCCCCceEEEEeCChHHHHHHHHHHhhhhhcccccCCCCCCCccEEEEEc
Q 002218 704 YALQHIKESCATTLVDFGCGSGSLLDSLLDYPTALEKIVGVDISQKSLSRAAKIIHSKLSKKLDAAVPCTDVKSAVLFDG 783 (952)
Q Consensus 704 fVldlL~~~k~krVLDIGCGeG~ll~~LAr~g~~~~qVVGVDISeemLe~ArkrLsa~la~~~~~l~Pr~~~~nVtf~qG 783 (952)
.+++.+...++..++|..||.|..+..|++..++..+|+|+|.++.+++.|+ ++. ..+++++++
T Consensus 48 Evl~~L~i~pggiyVD~TlG~GGHS~~iL~~lg~~GrVig~D~Dp~Al~~A~-rL~---------------~~Rv~lv~~ 111 (347)
T 3tka_A 48 EAVNGLNIRPDGIYIDGTFGRGGHSRLILSQLGEEGRLLAIDRDPQAIAVAK-TID---------------DPRFSIIHG 111 (347)
T ss_dssp HHHHHTCCCTTCEEEESCCTTSHHHHHHHTTCCTTCEEEEEESCHHHHHHHT-TCC---------------CTTEEEEES
T ss_pred HHHHhhCCCCCCEEEEeCcCCCHHHHHHHHhCCCCCEEEEEECCHHHHHHHH-hhc---------------CCcEEEEeC
Confidence 4666667677899999999999999999987445689999999999999984 331 247999999
Q ss_pred CccccCC---C--C-CCccEEEE
Q 002218 784 SITVFDS---R--L-HGFDIGTC 800 (952)
Q Consensus 784 Da~dLpf---~--d-~sFDVVVc 800 (952)
+..+++. . . +.+|.|+.
T Consensus 112 nF~~l~~~L~~~g~~~~vDgILf 134 (347)
T 3tka_A 112 PFSALGEYVAERDLIGKIDGILL 134 (347)
T ss_dssp CGGGHHHHHHHTTCTTCEEEEEE
T ss_pred CHHHHHHHHHhcCCCCcccEEEE
Confidence 9887642 1 1 25888876
No 321
>3lkz_A Non-structural protein 5; flavivirus, methyltransferase, inhibitor, P nucleotide-binding, RNA replication, viral protein; HET: SFG; 2.00A {West nile virus}
Probab=95.58 E-value=0.048 Score=59.56 Aligned_cols=125 Identities=12% Similarity=0.109 Sum_probs=75.4
Q ss_pred CCchhHHHHHHHHHHHhhcCCCCEEEEEcCccchHHHHHhcCCCCCceEEEEeCChHHHHHHHHHHhhhhhcccccCCCC
Q 002218 693 FSPPLSKQRVEYALQHIKESCATTLVDFGCGSGSLLDSLLDYPTALEKIVGVDISQKSLSRAAKIIHSKLSKKLDAAVPC 772 (952)
Q Consensus 693 F~PPL~~QR~efVldlL~~~k~krVLDIGCGeG~ll~~LAr~g~~~~qVVGVDISeemLe~ArkrLsa~la~~~~~l~Pr 772 (952)
-|+.-....+..+.+.....+..+||||||++|.++.+.+... ....|+|+|+-..--+. +. +...
T Consensus 74 ~y~SR~~~KL~ei~~~~~l~~~~~VlDLGaapGGwsq~~~~~~-gv~~V~avdvG~~~he~------P~-------~~~q 139 (321)
T 3lkz_A 74 HPVSRGTAKLRWLVERRFLEPVGKVIDLGCGRGGWCYYMATQK-RVQEVRGYTKGGPGHEE------PQ-------LVQS 139 (321)
T ss_dssp CCSSTHHHHHHHHHHTTSCCCCEEEEEETCTTCHHHHHHTTCT-TEEEEEEECCCSTTSCC------CC-------CCCB
T ss_pred CccchHHHHHHHHHHhcCCCCCCEEEEeCCCCCcHHHHHHhhc-CCCEEEEEEcCCCCccC------cc-------hhhh
Confidence 3444444455555555334466799999999999999777654 24689999986642110 00 0001
Q ss_pred CCCccEEEEEc-CccccCCCCCCccEEEEccccccCChhH---HHH--HHHHHHHccCCC--EEEEEecC
Q 002218 773 TDVKSAVLFDG-SITVFDSRLHGFDIGTCLEVIEHMEEDE---ASQ--FGNIVLSSFRPR--ILIVSTPN 834 (952)
Q Consensus 773 ~~~~nVtf~qG-Da~dLpf~d~sFDVVVcieVIEHL~dD~---l~~--L~eeI~RvLKPG--~LIISTPN 834 (952)
.+..-|.+..+ |+..++. ..+|+|+|--. |--+... ... .++.+.++|++| -++|-.-.
T Consensus 140 l~w~lV~~~~~~Dv~~l~~--~~~D~ivcDig-eSs~~~~ve~~Rtl~vLel~~~wL~~~~~~f~~KVl~ 206 (321)
T 3lkz_A 140 YGWNIVTMKSGVDVFYRPS--ECCDTLLCDIG-ESSSSAEVEEHRTIRVLEMVEDWLHRGPREFCVKVLC 206 (321)
T ss_dssp TTGGGEEEECSCCTTSSCC--CCCSEEEECCC-CCCSCHHHHHHHHHHHHHHHHHHHTTCCCEEEEEESC
T ss_pred cCCcceEEEeccCHhhCCC--CCCCEEEEECc-cCCCChhhhhhHHHHHHHHHHHHhccCCCcEEEEEcC
Confidence 12234889988 8877765 56999998544 5444222 111 234456788776 55555444
No 322
>4dip_A Peptidyl-prolyl CIS-trans isomerase FKBP14; structural genomics, structural genomics consortium, SGC, PE prolyl CIS-trans isomerase; 1.82A {Homo sapiens}
Probab=95.37 E-value=0.048 Score=51.05 Aligned_cols=106 Identities=18% Similarity=0.208 Sum_probs=78.9
Q ss_pred CCceeeecc-CCCCCCccCCCCceeEEEEEEEEeecccchhhhhcc------ccceEEEeccCccchhhhhhhhhccccc
Q 002218 564 EHGIYCLSI-GGPDSGIYPSNGCLSFISYSVSLVIEGETMKELLES------REEFEFEMGTGAVIPQVEVVTAQMSVGQ 636 (952)
Q Consensus 564 ~~~~~~~~~-~~~~~~~~p~~gs~~~i~y~~~l~~~~~~~~~~~e~------~~~~~fe~g~~a~~~~l~~v~~q~sv~q 636 (952)
...+....| +|.+.|--|..|+.+.|.|+..|..+|+ ++++ ...++|.+|.|.+++-++..+..|.+|.
T Consensus 11 ~~gl~~~~l~~g~~~g~~~~~gd~V~v~Y~g~~~~dG~----~fdss~~~~~~~p~~f~lG~~~~i~G~e~~l~gm~~Ge 86 (125)
T 4dip_A 11 EPEVKIEVLQKPFICHRKTKGGDLMLVHYEGYLEKDGS----LFHSTHKHNNGQPIWFTLGILEALKGWDQGLKGMCVGE 86 (125)
T ss_dssp CCCCEEEEEECCSCCSCCCCTTCEEEEEEEEEETTTCC----EEEEHHHHTTTCCEEEETTSCSSCHHHHHHSTTCCTTC
T ss_pred CCCeEEEEEEcCCCCCCcCCCCCEEEEEEEEEECCCCc----EEEEcccCCCCcCEEEEeCCCChhHHHHHHHhCCCCCC
Confidence 445555555 5778899999999999999999975554 3333 3679999999999999999999999999
Q ss_pred cceecccCCchhhhhhhccCcccchhcccccccccceeeeecccCC
Q 002218 637 SACFCKELPPQELILAAADDSARTFSLLSSRACCLEYHITLLRVTE 682 (952)
Q Consensus 637 ~~~~~~~l~~~~l~lAa~~~~~~DiSlLs~d~~~LEyyI~LL~v~e 682 (952)
.+.+. +||..-+=.... ..++..+. +.|.|.++.+.+
T Consensus 87 ~~~~~--ip~~~aYG~~g~------~~Ip~~~~-l~f~vel~~i~~ 123 (125)
T 4dip_A 87 KRKLI--IPPALGYGKEGK------GKIPPEST-LIFNIDLLEIRN 123 (125)
T ss_dssp EEEEE--ECGGGTTTTTCB------TTBCTTCC-EEEEEEEEEEEC
T ss_pred EEEEE--EChHHhcCCCCC------CCCCCCCe-EEEEEEEEEEEc
Confidence 98887 666544432221 13455555 888888887654
No 323
>1t4n_A Ribonuclease III; DSRBD, RNA-binding, hydrolase; NMR {Saccharomyces cerevisiae} SCOP: d.50.1.1
Probab=95.21 E-value=0.017 Score=53.15 Aligned_cols=57 Identities=14% Similarity=-0.002 Sum_probs=42.3
Q ss_pred HhccCceeEEEeeeeccccCCCCccccCCCCCceEEEeeecCCc-eeeeccccccchHHHHHHHHHHHHcC
Q 002218 24 QKFGRNAQFTVDEVQDVVQNGCPGLAIPQKGPCLYRCSLQLPEF-SVVSETFKKKKDAEQSAAEKALEKLG 93 (952)
Q Consensus 24 q~~g~~~~y~~~ev~~~~~~~~~~~~~~q~~~~~~~c~l~lp~~-~v~~~~~~~kkdaeq~aa~~al~klg 93 (952)
|+.+..-.|+|.+ + | |. --| .|...+.+.+- .+.+|.=+-||.|||.||+.||++|.
T Consensus 17 Q~~~~~p~Y~v~~--~----G-pd-----H~k-~F~v~v~i~~~~~~g~G~G~SKK~AEQ~AA~~AL~~l~ 74 (94)
T 1t4n_A 17 GYASLRLHYVTVK--K----P-TA-----VDP-NSIVECRVGDGTVLGTGVGRNIKIAGIRAAENALRDKK 74 (94)
T ss_dssp CSSSSCCEEEECC--C----C-SS-----SCC-SEEEEEECSSSCEEEEEEESSHHHHHHHHHHHHHHCHH
T ss_pred cCCCCCCEEEEee--e----C-CC-----CCC-eEEEEEEECCEEEEEEEEeCCHHHHHHHHHHHHHHHHH
Confidence 5555556788743 1 2 22 223 89999999987 56679999999999999999999763
No 324
>3p8z_A Mtase, non-structural protein 5; methyltransferase, RNA, ER, transferase-transferase inhibito; HET: 36A SAH; 1.70A {Dengue virus 3} SCOP: c.66.1.25 PDB: 3p97_A* 2xbm_A* 3evg_A*
Probab=95.02 E-value=0.028 Score=59.85 Aligned_cols=123 Identities=11% Similarity=0.145 Sum_probs=73.9
Q ss_pred CchhHHHHHHHHHHHhhcCCCCEEEEEcCccchHHHHHhcCCCCCceEEEEeCChHHHHHHHHHHhhhhhcccccCCCCC
Q 002218 694 SPPLSKQRVEYALQHIKESCATTLVDFGCGSGSLLDSLLDYPTALEKIVGVDISQKSLSRAAKIIHSKLSKKLDAAVPCT 773 (952)
Q Consensus 694 ~PPL~~QR~efVldlL~~~k~krVLDIGCGeG~ll~~LAr~g~~~~qVVGVDISeemLe~ArkrLsa~la~~~~~l~Pr~ 773 (952)
|..-.......+.+.....++.+||||||+.|.++...+... ....|+|+|+-..--+. +. +....
T Consensus 59 yrSRa~~KL~ei~ek~~l~~g~~VvDLGaapGGWSq~~a~~~-g~~~V~avdvG~~ghe~------P~-------~~~s~ 124 (267)
T 3p8z_A 59 AVSRGSAKLQWFVERNMVIPEGRVIDLGCGRGGWSYYCAGLK-KVTEVRGYTKGGPGHEE------PV-------PMSTY 124 (267)
T ss_dssp CSSTHHHHHHHHHHTTSSCCCEEEEEESCTTSHHHHHHHTST-TEEEEEEECCCSTTSCC------CC-------CCCCT
T ss_pred ccchHHHHHHHHHHhcCCCCCCEEEEcCCCCCcHHHHHHHhc-CCCEEEEEecCCCCccC------cc-------hhhhc
Confidence 333334444445544434467799999999999999776654 24689999986542210 00 01123
Q ss_pred CCccEEEEEc-CccccCCCCCCccEEEEccccccCCh---hHHH--HHHHHHHHccCCCEEEEEec
Q 002218 774 DVKSAVLFDG-SITVFDSRLHGFDIGTCLEVIEHMEE---DEAS--QFGNIVLSSFRPRILIVSTP 833 (952)
Q Consensus 774 ~~~nVtf~qG-Da~dLpf~d~sFDVVVcieVIEHL~d---D~l~--~L~eeI~RvLKPG~LIISTP 833 (952)
+-..|+|.++ |+..++. ..+|.|+|--. |--+. |... ..++.+.++|+++-++|-.-
T Consensus 125 gwn~v~fk~gvDv~~~~~--~~~DtllcDIg-eSs~~~~vE~~RtlrvLela~~wL~~~~fc~KVl 187 (267)
T 3p8z_A 125 GWNIVKLMSGKDVFYLPP--EKCDTLLCDIG-ESSPSPTVEESRTIRVLKMVEPWLKNNQFCIKVL 187 (267)
T ss_dssp TTTSEEEECSCCGGGCCC--CCCSEEEECCC-CCCSCHHHHHHHHHHHHHHHGGGCSSCEEEEEES
T ss_pred CcCceEEEeccceeecCC--ccccEEEEecC-CCCCChhhhhhHHHHHHHHHHHhcccCCEEEEEc
Confidence 4567999999 9877664 66999999422 21111 1111 13344578898885545443
No 325
>1g60_A Adenine-specific methyltransferase MBOIIA; structural genomics, DNA methylation, S- adenosylmethionine, PSI, protein structure initiative; HET: SAM; 1.74A {Moraxella bovis} SCOP: c.66.1.11
Probab=94.98 E-value=0.035 Score=57.98 Aligned_cols=52 Identities=13% Similarity=0.202 Sum_probs=44.0
Q ss_pred HHHHHhhcCCCCEEEEEcCccchHHHHHhcCCCCCceEEEEeCChHHHHHHHHHHh
Q 002218 704 YALQHIKESCATTLVDFGCGSGSLLDSLLDYPTALEKIVGVDISQKSLSRAAKIIH 759 (952)
Q Consensus 704 fVldlL~~~k~krVLDIGCGeG~ll~~LAr~g~~~~qVVGVDISeemLe~ArkrLs 759 (952)
.+.+... .++..|||..||+|..+....+.+ .+++|+|+++.+++.|++++.
T Consensus 204 ~~i~~~~-~~~~~vlD~f~GsGtt~~~a~~~g---r~~ig~e~~~~~~~~~~~r~~ 255 (260)
T 1g60_A 204 RIIRASS-NPNDLVLDCFMGSGTTAIVAKKLG---RNFIGCDMNAEYVNQANFVLN 255 (260)
T ss_dssp HHHHHHC-CTTCEEEESSCTTCHHHHHHHHTT---CEEEEEESCHHHHHHHHHHHH
T ss_pred HHHHHhC-CCCCEEEECCCCCCHHHHHHHHcC---CeEEEEeCCHHHHHHHHHHHH
Confidence 4444333 467899999999999999998888 799999999999999998875
No 326
>1rjd_A PPM1P, carboxy methyl transferase for protein phosphatase 2A catalytic subunit; SAM dependent methyltransferase; HET: SAM; 1.80A {Saccharomyces cerevisiae} SCOP: c.66.1.37 PDB: 1rje_A* 1rjf_A 1rjg_A* 2ob2_A* 2ob1_A
Probab=94.94 E-value=0.13 Score=56.28 Aligned_cols=128 Identities=17% Similarity=0.119 Sum_probs=84.0
Q ss_pred HHHHHHHHHh----hcCCCCEEEEEcCccchHHHHHhcCCCCCceEEEEeCChHHHHHHHHHHhhhhhc---cc-ccCCC
Q 002218 700 QRVEYALQHI----KESCATTLVDFGCGSGSLLDSLLDYPTALEKIVGVDISQKSLSRAAKIIHSKLSK---KL-DAAVP 771 (952)
Q Consensus 700 QR~efVldlL----~~~k~krVLDIGCGeG~ll~~LAr~g~~~~qVVGVDISeemLe~ArkrLsa~la~---~~-~~l~P 771 (952)
.|..++-+.+ ...+...|+.+|||.......|.... +...++-||. ++.++.-++.+.....- .. ....+
T Consensus 80 ~Rt~~iD~~v~~fl~~~~~~qVV~LGaGlDTr~~RL~~~~-~~~~~~EvD~-P~vi~~K~~~l~~~~~l~~~l~~~~~~~ 157 (334)
T 1rjd_A 80 LRTVGIDAAILEFLVANEKVQVVNLGCGSDLRMLPLLQMF-PHLAYVDIDY-NESVELKNSILRESEILRISLGLSKEDT 157 (334)
T ss_dssp HHHHHHHHHHHHHHHHCSSEEEEEETCTTCCTHHHHHHHC-TTEEEEEEEC-HHHHHHHHHHHHHSHHHHHHHTCCSSCC
T ss_pred HHHHHHHHHHHHHHHHCCCcEEEEeCCCCccHHHHhcCcC-CCCEEEECCC-HHHHHHHHHHhhhccchhhhcccccccc
Confidence 3555554443 33456799999999999998887642 1378888887 88888877766532100 00 00000
Q ss_pred CC-----CCccEEEEEcCccccCC---------CCCCccEEEEccccccCChhHHHHHHHHHHHccCCCEEE
Q 002218 772 CT-----DVKSAVLFDGSITVFDS---------RLHGFDIGTCLEVIEHMEEDEASQFGNIVLSSFRPRILI 829 (952)
Q Consensus 772 r~-----~~~nVtf~qGDa~dLpf---------~d~sFDVVVcieVIEHL~dD~l~~L~eeI~RvLKPG~LI 829 (952)
.. ...+..++.+|+.+.+. ......++++-.++.+|+++....+.+.+.+.+..+.++
T Consensus 158 ~~~~~~~~~~~~~~v~~DL~d~~w~~~ll~~~~d~~~Ptl~iaEgvL~YL~~~~~~~ll~~ia~~~~~~~~v 229 (334)
T 1rjd_A 158 AKSPFLIDQGRYKLAACDLNDITETTRLLDVCTKREIPTIVISECLLCYMHNNESQLLINTIMSKFSHGLWI 229 (334)
T ss_dssp CCTTEEEECSSEEEEECCTTCHHHHHHHHHTTCCTTSCEEEEEESCGGGSCHHHHHHHHHHHHHHCSSEEEE
T ss_pred cccccccCCCceEEEecCCCCcHHHHHHHHhcCCCCCCEEEEEcchhhCCCHHHHHHHHHHHHhhCCCcEEE
Confidence 00 12478899999987432 124567888999999999999888888888877544444
No 327
>2yt4_A Protein DGCR8; DSRBD, RNA binding domain, RNA binding protein; 2.60A {Homo sapiens}
Probab=94.76 E-value=0.049 Score=56.97 Aligned_cols=70 Identities=20% Similarity=0.135 Sum_probs=52.1
Q ss_pred cccCCCChHhHHH---HhccCc-eeEEEeeeeccccCCCCccccCCCCCceEEEeeecCCceeeeccccccchHHHHHHH
Q 002218 11 VRKMKLTPKAIIV---QKFGRN-AQFTVDEVQDVVQNGCPGLAIPQKGPCLYRCSLQLPEFSVVSETFKKKKDAEQSAAE 86 (952)
Q Consensus 11 ~~~~~~tpka~~~---q~~g~~-~~y~~~ev~~~~~~~~~~~~~~q~~~~~~~c~l~lp~~~v~~~~~~~kkdaeq~aa~ 86 (952)
......+||-+++ |+.|.. -.|++.+. .| .. | .|.|.+.+.+..+.+|.-+-||+|||.||+
T Consensus 17 ~~~~~kd~ks~LqE~~q~~~~~~p~Y~~~~~-----~G---p~-----~-~F~~~v~v~g~~~~~G~G~SKK~Aeq~AA~ 82 (232)
T 2yt4_A 17 INPNGKSEVCILHEYMQRVLKVRPVYNFFEC-----EN---PS-----E-PFGASVTIDGVTYGSGTASSKKLAKNKAAR 82 (232)
T ss_dssp ECCTTSCHHHHHHHHHHHTTCCCCEEEEEEC-----SC---TT-----S-CEEEEEEETTEEEEEEEESSHHHHHHHHHH
T ss_pred hcCCCCCHHHHHHHHHHHcCCCCCeEEEEee-----EC---CC-----C-cEEEEEEECCEEEeecCCCCHHHHHHHHHH
Confidence 3445678998875 555544 47877421 12 11 3 799999999877778888999999999999
Q ss_pred HHHHHcCC
Q 002218 87 KALEKLGI 94 (952)
Q Consensus 87 ~al~klg~ 94 (952)
.||++|+-
T Consensus 83 ~aL~~L~~ 90 (232)
T 2yt4_A 83 ATLEILIP 90 (232)
T ss_dssp HHHHHHST
T ss_pred HHHHHHHh
Confidence 99999974
No 328
>2vn1_A 70 kDa peptidylprolyl isomerase; FKBP, FK506, TPR repeat; HET: FK5; 2.35A {Plasmodium falciparum} PDB: 2ofn_A 2ki3_A 3ihz_A* 3ni6_A 3pa7_A
Probab=94.73 E-value=0.069 Score=50.27 Aligned_cols=99 Identities=18% Similarity=0.250 Sum_probs=71.9
Q ss_pred cCC-CCCCccCCCCceeEEEEEEEEeecccchhhhhcc----ccceEEEeccCccchhhhhhhhhccccccceecccCCc
Q 002218 572 IGG-PDSGIYPSNGCLSFISYSVSLVIEGETMKELLES----REEFEFEMGTGAVIPQVEVVTAQMSVGQSACFCKELPP 646 (952)
Q Consensus 572 ~~~-~~~~~~p~~gs~~~i~y~~~l~~~~~~~~~~~e~----~~~~~fe~g~~a~~~~l~~v~~q~sv~q~~~~~~~l~~ 646 (952)
-+| ..+|-.|..|+.+.|.|+.++..+|+ .+++ ...|+|.+|.|.+++-++..+..|.+|..+.|. +||
T Consensus 24 ~~G~~g~g~~~~~gd~V~v~Y~g~~~~dG~----~fd~s~~~~~p~~f~lG~g~~i~g~e~~l~gm~~Ge~~~v~--ip~ 97 (129)
T 2vn1_A 24 KKGDEGEENIPKKGNEVTVHYVGKLESTGK----VFDSSFDRNVPFKFHLEQGEVIKGWDICVSSMRKNEKCLVR--IES 97 (129)
T ss_dssp ECCCCSGGGSCCTTCEEEEEEEEEETTTCC----EEEEGGGTTCCEEEETTSSSSCHHHHHHHTTCCTTCEEEEE--ECG
T ss_pred eCCCCCCCCcCCCCCEEEEEEEEEECCCCe----EEEecCCCCccEEEEeCCCCcCHHHHHHHhCCCCCCEEEEE--ECh
Confidence 357 55789999999999999999844554 3443 367999999999999999999999999999987 565
Q ss_pred hhhhhhhccCcccchhcccccccccceeeeecccCC
Q 002218 647 QELILAAADDSARTFSLLSSRACCLEYHITLLRVTE 682 (952)
Q Consensus 647 ~~l~lAa~~~~~~DiSlLs~d~~~LEyyI~LL~v~e 682 (952)
..-+=.... . ..+|.... +.|.|.++.+.+
T Consensus 98 ~~aYG~~~~---~--~~Ip~~~~-l~f~vel~~v~~ 127 (129)
T 2vn1_A 98 MYGYGDEGC---G--ESIPGNSV-LLFEIELLSFRE 127 (129)
T ss_dssp GGTTTTTCB---T--TTBCTTCC-EEEEEEEEEEEC
T ss_pred HHcCCCCCC---C--CCcCCCCe-EEEEEEEEEEec
Confidence 443322111 0 12444555 788888876543
No 329
>2l3j_A Double-stranded RNA-specific editase 1; editing, dsRNA recognition, DSRBM, hydrolase-RNA complex; NMR {Rattus norvegicus}
Probab=94.66 E-value=0.076 Score=55.61 Aligned_cols=67 Identities=16% Similarity=0.092 Sum_probs=49.3
Q ss_pred CCChHhHHHHhccCceeEEEeeeeccccCCCCccccCCCCCceEEEeeecCCceeeeccccccchHHHHHHHHHHHHcCC
Q 002218 15 KLTPKAIIVQKFGRNAQFTVDEVQDVVQNGCPGLAIPQKGPCLYRCSLQLPEFSVVSETFKKKKDAEQSAAEKALEKLGI 94 (952)
Q Consensus 15 ~~tpka~~~q~~g~~~~y~~~ev~~~~~~~~~~~~~~q~~~~~~~c~l~lp~~~v~~~~~~~kkdaeq~aa~~al~klg~ 94 (952)
...||.++++- ...-.|++.+. .| |.-.| .|.|.+.+-+.. ..|.-+-||.|||.||+.||++|+.
T Consensus 160 ~~d~ks~LqE~-~~~p~Y~~~~~-----~G------p~h~~-~F~~~v~v~~~~-~~G~G~sKK~Aeq~AA~~al~~L~~ 225 (236)
T 2l3j_A 160 GKNPVMILNEL-RPGLKYDFLSE-----SG------ESHAK-SFVMSVVVDGQF-FEGSGRNKKLAKARAAQSALATVFN 225 (236)
T ss_dssp SCCHHHHHHHH-CCCEEEEEECC-----SS------SSSSC-CEEEEEEETTEE-EEEEESSHHHHHHHHHHHHHHHHTT
T ss_pred CCCHHHHHHhc-CCCCcEEEEEe-----eC------CCCCC-eEEEEEEECCEE-EEeeeCCHHHHHHHHHHHHHHHHcc
Confidence 45789887765 55567865421 11 22334 789999888864 4899999999999999999999974
Q ss_pred C
Q 002218 95 D 95 (952)
Q Consensus 95 ~ 95 (952)
.
T Consensus 226 ~ 226 (236)
T 2l3j_A 226 L 226 (236)
T ss_dssp C
T ss_pred c
Confidence 3
No 330
>2nug_A Ribonuclease III, RNAse III; dsRNA, RNA interference, endonucleolytic cleavage, hydrolase/RNA complex; 1.70A {Aquifex aeolicus} SCOP: a.149.1.1 d.50.1.1 PDB: 1yyw_A 2nue_A 2nuf_A 1yyk_A 1yz9_A 1yyo_A 2ez6_A 1rc7_A 1i4s_A 1jfz_A 1rc5_A
Probab=94.62 E-value=0.047 Score=56.14 Aligned_cols=66 Identities=29% Similarity=0.355 Sum_probs=49.2
Q ss_pred CCChHhHHH---HhccCc-eeEEEeeeeccccCCCCccccCCCCCceEEEeeecCCceeeeccccccchHHHHHHHHHHH
Q 002218 15 KLTPKAIIV---QKFGRN-AQFTVDEVQDVVQNGCPGLAIPQKGPCLYRCSLQLPEFSVVSETFKKKKDAEQSAAEKALE 90 (952)
Q Consensus 15 ~~tpka~~~---q~~g~~-~~y~~~ev~~~~~~~~~~~~~~q~~~~~~~c~l~lp~~~v~~~~~~~kkdaeq~aa~~al~ 90 (952)
...||..+. |+.|.. -.|++.+.. | |...| .|.|.+.+.+. +.+|.-+-||+|||.||+.||+
T Consensus 149 ~~~pks~LqE~~q~~~~~~p~Y~~~~~~-----G------~~h~~-~F~v~v~v~~~-~~~G~G~skK~Ae~~AA~~AL~ 215 (221)
T 2nug_A 149 KKDYKTILQEITQKRWKERPEYRLISVE-----G------PHHKK-KFIVEAKIKEY-RTLGEGKSKKEAEQRAAEELIK 215 (221)
T ss_dssp CCCHHHHHHHHHHHHHSCCCEEEEEEEE-----S------CGGGC-EEEEEEEETTE-EEEEEESSHHHHHHHHHHHHHH
T ss_pred ccCHHHHHHHHHHHcCCCCceEEEEEee-----C------CCCCc-eEEEEEEECCE-EEEEecCCHHHHHHHHHHHHHH
Confidence 357887764 444443 578775321 1 22233 89999999998 7779999999999999999999
Q ss_pred HcC
Q 002218 91 KLG 93 (952)
Q Consensus 91 klg 93 (952)
+|+
T Consensus 216 ~L~ 218 (221)
T 2nug_A 216 LLE 218 (221)
T ss_dssp HHC
T ss_pred Hhh
Confidence 997
No 331
>2pbc_A FK506-binding protein 2; endoplasmic reticulum, isomerase, polymorphism, rotamase, structural genomics, structural genomics consortium, SGC; 1.80A {Homo sapiens}
Probab=94.49 E-value=0.057 Score=48.60 Aligned_cols=92 Identities=22% Similarity=0.338 Sum_probs=66.9
Q ss_pred CccCCCCceeEEEEEEEEeecccchhhhhcc----ccceEEEeccCccchhhhhhhhhccccccceecccCCchhhhhhh
Q 002218 578 GIYPSNGCLSFISYSVSLVIEGETMKELLES----REEFEFEMGTGAVIPQVEVVTAQMSVGQSACFCKELPPQELILAA 653 (952)
Q Consensus 578 ~~~p~~gs~~~i~y~~~l~~~~~~~~~~~e~----~~~~~fe~g~~a~~~~l~~v~~q~sv~q~~~~~~~l~~~~l~lAa 653 (952)
|--|..|+.+.|.|+..+ .+|+ .+++ ...|+|.+|.|.+.+-++..+..|.+|..+.|. +||..-+=..
T Consensus 3 g~~~~~gd~V~v~y~~~~-~dG~----~~d~s~~~~~p~~f~lG~~~~i~g~~~~l~gm~~Ge~~~v~--ip~~~ayG~~ 75 (102)
T 2pbc_A 3 PIKSRKGDVLHMHYTGKL-EDGT----EFDSSLPQNQPFVFSLGTGQVIKGWDQGLLGMCEGEKRKLV--IPSELGYGER 75 (102)
T ss_dssp CCCCCTTCEEEEEEEEEC-TTSC----EEEESTTTTCCEEEETTSSSSCHHHHTTSTTCCTTCEEEEE--ECGGGTTTTT
T ss_pred CCcCCCCCEEEEEEEEEE-CCCC----EEEeCCCCCCCEEEEeCCCCccHHHHHHHhCCCCCCEEEEE--ECHHHCcCCC
Confidence 345899999999999997 3454 4544 467999999999999999999999999999875 6665433222
Q ss_pred ccCcccchhcccccccccceeeeecccCC
Q 002218 654 ADDSARTFSLLSSRACCLEYHITLLRVTE 682 (952)
Q Consensus 654 ~~~~~~DiSlLs~d~~~LEyyI~LL~v~e 682 (952)
.. . ..++.... +.|.|.++.+..
T Consensus 76 ~~---~--~~Ip~~~~-l~f~v~l~~v~~ 98 (102)
T 2pbc_A 76 GA---P--PKIPGGAT-LVFEVELLKIER 98 (102)
T ss_dssp CB---T--TTBCTTCC-EEEEEEEEEEGG
T ss_pred CC---C--CCcCcCCe-EEEEEEEEEecc
Confidence 11 0 12344444 788888887654
No 332
>1o0w_A Ribonuclease III, RNAse III; TM1102, structural genomics, JCSG, PSI, protein structure initiative, joint center for structural genomics; 2.00A {Thermotoga maritima} SCOP: a.149.1.1 d.50.1.1
Probab=94.46 E-value=0.065 Score=56.35 Aligned_cols=68 Identities=18% Similarity=0.198 Sum_probs=49.8
Q ss_pred CCChHhHHH---HhccC-ceeEEEeeeeccccCCCCccccCCCCCceEEEeeecCCceeeeccccccchHHHHHHHHHHH
Q 002218 15 KLTPKAIIV---QKFGR-NAQFTVDEVQDVVQNGCPGLAIPQKGPCLYRCSLQLPEFSVVSETFKKKKDAEQSAAEKALE 90 (952)
Q Consensus 15 ~~tpka~~~---q~~g~-~~~y~~~ev~~~~~~~~~~~~~~q~~~~~~~c~l~lp~~~v~~~~~~~kkdaeq~aa~~al~ 90 (952)
...||..+. |+-|. .-.|++.+. .| |...| .|.|.+.+.+-.+.+|.-+-||+|||.||+.||+
T Consensus 178 ~~dpkt~LqE~~q~~~~~~p~Y~~~~~-----~G------p~h~~-~F~v~v~v~g~~~~~G~G~SKK~Aeq~AA~~AL~ 245 (252)
T 1o0w_A 178 LFDYKTALQEIVQSEHKVPPEYILVRT-----EK------NDGDR-IFVVEVRVNGKTIATGKGRTKKEAEKEAARIAYE 245 (252)
T ss_dssp CSCHHHHHHHHHHHHHSSCCEEEEEEE-----EC------CTTSC-EEEEEEEETTEEEEEEEESSHHHHHHHHHHHHHH
T ss_pred ccCHHHHHHHHHHHcCCCCceEEEEee-----eC------CCCCC-eEEEEEEECCEEEEEEeeCCHHHHHHHHHHHHHH
Confidence 457887764 44443 467887532 11 22233 7999999999777779999999999999999999
Q ss_pred HcCC
Q 002218 91 KLGI 94 (952)
Q Consensus 91 klg~ 94 (952)
+|+-
T Consensus 246 ~L~~ 249 (252)
T 1o0w_A 246 KLLK 249 (252)
T ss_dssp HHC-
T ss_pred HHhh
Confidence 9973
No 333
>1t4o_A Ribonuclease III; RNT1P, DSRBD, RNA-binding, hydrolase; 2.50A {Saccharomyces cerevisiae} SCOP: d.50.1.1 PDB: 1t4l_B 2lbs_B
Probab=94.30 E-value=0.048 Score=52.06 Aligned_cols=65 Identities=14% Similarity=0.035 Sum_probs=46.2
Q ss_pred CChHhHH---HHhccCceeEEEeeeeccccCCCCccccCCCCCceEEEeeecCCc-eeeeccccccchHHHHHHHHHHHH
Q 002218 16 LTPKAII---VQKFGRNAQFTVDEVQDVVQNGCPGLAIPQKGPCLYRCSLQLPEF-SVVSETFKKKKDAEQSAAEKALEK 91 (952)
Q Consensus 16 ~tpka~~---~q~~g~~~~y~~~ev~~~~~~~~~~~~~~q~~~~~~~c~l~lp~~-~v~~~~~~~kkdaeq~aa~~al~k 91 (952)
.-||-.+ -|+++..-.|+|.+. . |.--| .|...+.+.+- .+..|.=+-||.|||.||+.||++
T Consensus 8 ~D~KT~LQE~~Q~~~~~P~Y~vv~~--G----------PdH~k-~F~v~V~i~g~~~~g~G~G~SKK~AEQ~AA~~AL~~ 74 (117)
T 1t4o_A 8 MNAKRQLYSLIGYASLRLHYVTVKK--P----------TAVDP-NSIVECRVGDGTVLGTGVGRNIKIAGIRAAENALRD 74 (117)
T ss_dssp TTHHHHHHHHHCCGGGCCEEEEEEC--C----------CSSCC-CEEEEEECTTCCEEEEEEESSHHHHHHHHHHHHHHC
T ss_pred CCchHHHHHHHcCCCCCCEEEEeee--C----------CCCCC-eEEEEEEECCEEEEEEEEeCCHHHHHHHHHHHHHHH
Confidence 3566543 356665567987641 1 22233 89999999987 566799999999999999999876
Q ss_pred cC
Q 002218 92 LG 93 (952)
Q Consensus 92 lg 93 (952)
|.
T Consensus 75 l~ 76 (117)
T 1t4o_A 75 KK 76 (117)
T ss_dssp HH
T ss_pred HH
Confidence 43
No 334
>2uyo_A Hypothetical protein ML2640; putative methyltransferase, transferas; 1.7A {Mycobacterium leprae} SCOP: c.66.1.57 PDB: 2ckd_A 2uyq_A*
Probab=94.23 E-value=1 Score=48.83 Aligned_cols=124 Identities=10% Similarity=-0.027 Sum_probs=85.2
Q ss_pred HHHHHHHHHHhhc---CCCCEEEEEcCccchHHHHHhcCCCCCceEEEEeCChHHHHHHHHHHhhhhhcccccCCCCCCC
Q 002218 699 KQRVEYALQHIKE---SCATTLVDFGCGSGSLLDSLLDYPTALEKIVGVDISQKSLSRAAKIIHSKLSKKLDAAVPCTDV 775 (952)
Q Consensus 699 ~QR~efVldlL~~---~k~krVLDIGCGeG~ll~~LAr~g~~~~qVVGVDISeemLe~ArkrLsa~la~~~~~l~Pr~~~ 775 (952)
-.|..++-+.+.. .....|++||||-=.....+.. + ...+++=|| .++.++..++.+.... ....
T Consensus 85 ~~Rt~~~d~~v~~~~~~g~~QvV~LGaGlDTra~Rl~~-~-~~~~v~evD-~P~vi~~k~~lL~~~~---------~~~~ 152 (310)
T 2uyo_A 85 AVRTNFFDTYFNNAVIDGIRQFVILASGLDSRAYRLDW-P-TGTTVYEID-QPKVLAYKSTTLAEHG---------VTPT 152 (310)
T ss_dssp HHHHHHHHHHHHHHHHTTCCEEEEETCTTCCHHHHSCC-C-TTCEEEEEE-CHHHHHHHHHHHHHTT---------CCCS
T ss_pred HHHHHHHHHHHHHHHHhCCCeEEEeCCCCCchhhhccC-C-CCcEEEEcC-CHHHHHHHHHHHHhcC---------CCCC
Confidence 3455455444432 3456899999998777777753 1 226899999 6999999888775311 0123
Q ss_pred ccEEEEEcCccccCC---------CCCCccEEEEccccccCChhHHHHHHHHHHHccCCC-EEEEEecCC
Q 002218 776 KSAVLFDGSITVFDS---------RLHGFDIGTCLEVIEHMEEDEASQFGNIVLSSFRPR-ILIVSTPNY 835 (952)
Q Consensus 776 ~nVtf~qGDa~dLpf---------~d~sFDVVVcieVIEHL~dD~l~~L~eeI~RvLKPG-~LIISTPN~ 835 (952)
.+..++.+|+.+ .. ....-=++++-.+++||+++....+.+.+...+.|| .+++...+.
T Consensus 153 ~~~~~v~~Dl~d-~~~~~l~~~g~d~~~Pt~~i~Egvl~Yl~~~~~~~ll~~l~~~~~~gs~l~~d~~~~ 221 (310)
T 2uyo_A 153 ADRREVPIDLRQ-DWPPALRSAGFDPSARTAWLAEGLLMYLPATAQDGLFTEIGGLSAVGSRIAVETSPL 221 (310)
T ss_dssp SEEEEEECCTTS-CHHHHHHHTTCCTTSCEEEEECSCGGGSCHHHHHHHHHHHHHTCCTTCEEEEECCCT
T ss_pred CCeEEEecchHh-hHHHHHHhccCCCCCCEEEEEechHhhCCHHHHHHHHHHHHHhCCCCeEEEEEecCC
Confidence 467888999876 31 112234777888999999888888888888888899 777765544
No 335
>1i4w_A Mitochondrial replication protein MTF1; mitochondrial transcription factor, transcription initiation; 2.60A {Saccharomyces cerevisiae} SCOP: c.66.1.24
Probab=93.93 E-value=0.079 Score=58.75 Aligned_cols=71 Identities=4% Similarity=-0.030 Sum_probs=52.9
Q ss_pred HHHHHHhhcC------CCCEEEEEcCccchHHHHHhcCCCCCceEEEEeCChHHHHHHHHHHhhhhhcccccCCCCCCCc
Q 002218 703 EYALQHIKES------CATTLVDFGCGSGSLLDSLLDYPTALEKIVGVDISQKSLSRAAKIIHSKLSKKLDAAVPCTDVK 776 (952)
Q Consensus 703 efVldlL~~~------k~krVLDIGCGeG~ll~~LAr~g~~~~qVVGVDISeemLe~ArkrLsa~la~~~~~l~Pr~~~~ 776 (952)
+.|++.+... ++..|||||.|.|.++..|++.. ...+|++|++++.++..-++.+ ...
T Consensus 42 ~~Iv~~~~l~~~~~~~~~~~VlEIGPG~G~LT~~Ll~~~-~~~~vvavE~D~~l~~~L~~~~---------------~~~ 105 (353)
T 1i4w_A 42 NKIFDKLDLTKTYKHPEELKVLDLYPGVGIQSAIFYNKY-CPRQYSLLEKRSSLYKFLNAKF---------------EGS 105 (353)
T ss_dssp HHHHHHHCGGGTCCCTTTCEEEEESCTTCHHHHHHHHHH-CCSEEEEECCCHHHHHHHHHHT---------------TTS
T ss_pred HHHHHhccCCcccCcCCCCEEEEECCCCCHHHHHHHhhC-CCCEEEEEecCHHHHHHHHHhc---------------cCC
Confidence 3455555433 35899999999999999999752 0168999999999988876543 124
Q ss_pred cEEEEEcCccccC
Q 002218 777 SAVLFDGSITVFD 789 (952)
Q Consensus 777 nVtf~qGDa~dLp 789 (952)
+++++++|+..++
T Consensus 106 ~l~ii~~D~l~~~ 118 (353)
T 1i4w_A 106 PLQILKRDPYDWS 118 (353)
T ss_dssp SCEEECSCTTCHH
T ss_pred CEEEEECCccchh
Confidence 7899999997654
No 336
>2awg_A 38 kDa FK-506 binding protein; FKBP-type, ppiase, BCL-2 inhibitor, SHH signalling antagonist, structural genomics consortium, SGC; 1.60A {Homo sapiens} PDB: 2f2d_A 3ey6_A
Probab=93.78 E-value=0.2 Score=46.35 Aligned_cols=97 Identities=21% Similarity=0.315 Sum_probs=69.0
Q ss_pred ccCCCCCCccCCCCceeEEEEEEEEeecccchhhhhccccceEEEeccCccchhhhhhhhhccccccceecccCCchhhh
Q 002218 571 SIGGPDSGIYPSNGCLSFISYSVSLVIEGETMKELLESREEFEFEMGTGAVIPQVEVVTAQMSVGQSACFCKELPPQELI 650 (952)
Q Consensus 571 ~~~~~~~~~~p~~gs~~~i~y~~~l~~~~~~~~~~~e~~~~~~fe~g~~a~~~~l~~v~~q~sv~q~~~~~~~l~~~~l~ 650 (952)
-.+|......|..|+.+.|.|...+ .+|+ .+++...++|.+|.+.+.+-++..+..|.+|..+.|. +||..-+
T Consensus 20 l~~G~G~~~~~~~gd~V~v~y~g~~-~dG~----~~ds~~p~~f~lG~~~~i~g~e~~l~gm~~Ge~~~~~--ip~~~ay 92 (118)
T 2awg_A 20 LVPGPPGSSRPVKGQVVTVHLQTSL-ENGT----RVQEEPELVFTLGDCDVIQALDLSVPLMDVGETAMVT--ADSKYCY 92 (118)
T ss_dssp EECCCTTCCCCCTTSEEEEEEEEEC-TTSC----EEEEEEEEEEETTSSCSCHHHHHHGGGSCTTCEEEEE--ECGGGTT
T ss_pred EEcCCCCCccCCCCCEEEEEEEEEE-CCCC----EEECCCCEEEEECCCChhHHHHHHHhCCCCCCEEEEE--EChHHcc
Confidence 3456433347999999999999987 3443 5677889999999999999999999999999999886 5654432
Q ss_pred hhhccCcccchhcccccccccceeeeeccc
Q 002218 651 LAAADDSARTFSLLSSRACCLEYHITLLRV 680 (952)
Q Consensus 651 lAa~~~~~~DiSlLs~d~~~LEyyI~LL~v 680 (952)
=..... ..++..+. +.|.|.++.+
T Consensus 93 G~~~~~-----~~Ip~~~~-l~f~v~l~~v 116 (118)
T 2awg_A 93 GPQGRS-----PYIPPHAA-LCLEVTLKTA 116 (118)
T ss_dssp TTTCBT-----TTBCTTCC-EEEEEEEEEE
T ss_pred CCCCCC-----CccCCCCe-EEEEEEEEEe
Confidence 211110 12334444 7777777654
No 337
>2f4e_A ATFKBP42; FKBP-like, alpha-beta, signaling protein; 2.32A {Arabidopsis thaliana}
Probab=93.48 E-value=0.13 Score=51.66 Aligned_cols=103 Identities=17% Similarity=0.219 Sum_probs=73.1
Q ss_pred CCccCCCCceeEEEEEEEEeecccchhhhhccccceEEEeccC-ccchhhhhhhhhccccccceecccCCchhhhhhhcc
Q 002218 577 SGIYPSNGCLSFISYSVSLVIEGETMKELLESREEFEFEMGTG-AVIPQVEVVTAQMSVGQSACFCKELPPQELILAAAD 655 (952)
Q Consensus 577 ~~~~p~~gs~~~i~y~~~l~~~~~~~~~~~e~~~~~~fe~g~~-a~~~~l~~v~~q~sv~q~~~~~~~l~~~~l~lAa~~ 655 (952)
+|-.|..|+.|.|.|+..|..+|+-...-.+....|+|.+|.| .+++-++..+..|.+|..+.|. +||..-+=....
T Consensus 60 ~G~~~~~Gd~V~v~Y~g~l~~dG~~fdss~~~~~p~~f~lG~g~~vi~G~eeaL~gMk~Ge~~~v~--iPp~~aYG~~g~ 137 (180)
T 2f4e_A 60 HGSKPSKYSTCFLHYRAWTKNSQHKFEDTWHEQQPIELVLGKEKKELAGLAIGVASMKSGERALVH--VGWELAYGKEGN 137 (180)
T ss_dssp BSCCBCTTCEEEEEEEEEETTTCCEEEETTTTTCCEEEETTSCCGGGHHHHHHHTTCCBTCEEEEE--ECGGGTTTTTCB
T ss_pred CCCCCCCCCEEEEEEEEEECCCCcEEeccCccCCCEEEEeCCCCchhHHHHHHHhCCCCCCEEEEE--ECchHhCCcCCc
Confidence 4778999999999999998655542211112246799999999 9999999999999999999987 566433322111
Q ss_pred CcccchhcccccccccceeeeecccCCChh
Q 002218 656 DSARTFSLLSSRACCLEYHITLLRVTEPPE 685 (952)
Q Consensus 656 ~~~~DiSlLs~d~~~LEyyI~LL~v~ep~E 685 (952)
.+...++-... +.|.|.++.+..+.+
T Consensus 138 ---~~~~~Ip~~s~-l~F~VeL~~v~~~~e 163 (180)
T 2f4e_A 138 ---FSFPNVPPMAD-LLYEVEVIGFDETKE 163 (180)
T ss_dssp ---SSSSCBCTTCC-EEEEEEEEEESCBCC
T ss_pred ---ccCCCcCCCCe-EEEEEEEEEEecCcc
Confidence 11112445555 899999998776554
No 338
>2cqk_A C-MPL binding protein; LA domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: a.4.5.46
Probab=93.14 E-value=0.03 Score=52.16 Aligned_cols=85 Identities=18% Similarity=0.114 Sum_probs=68.4
Q ss_pred ChHHHHHHHHHHHhhhhcccccccCCCchhhhHHhhhhcCcccccccceEEEeecccccccccccCcccccchHHHHHHH
Q 002218 102 SAEEAWDKLIASVKHLFSNEFLSSQSPLRGHFIAALRRDGDLYGSVPASVIAVCDSKLANLCKLINPKVESSHLLVLTYI 181 (952)
Q Consensus 102 ~~~e~~~~l~~~~~~~f~~e~~~~~~pl~~h~~~~~~r~g~~~g~~p~~~~~~~d~k~~~~ck~~~~~~e~~p~~~~~~~ 181 (952)
+.++.-+.|+.+|.|-|||+=|..++=|..|+. -=|.||+++||.+- |+.++.+ | +.+|
T Consensus 10 ~~~~l~~~I~~QvEyYFSd~NL~~D~fL~~~md--------~~G~Vpl~~iasF~-r~k~lt~--------d----~~~i 68 (101)
T 2cqk_A 10 STEDLKECLKKQLEFCFSRENLSKDLYLISQMD--------SDQFIPIWTVANME-EIKKLTT--------D----PDLI 68 (101)
T ss_dssp CHHHHHHHHHHHHHHHTSHHHHHHCHHHHHHSC--------TTSCEEHHHHHHCH-HHHHHCC--------C----HHHH
T ss_pred CHHHHHHHHHHHHHhhcchhhhccCHHHHHhhh--------cCCCEEhHHHhCCh-HHHHHcC--------C----HHHH
Confidence 778888999999999999998888887777762 34899999999874 4554443 1 4678
Q ss_pred HHHhhccCCcEEeecCceeeeecCCCC
Q 002218 182 MRAATRLSEFVVTSEGQLSIWRKDPYP 208 (952)
Q Consensus 182 ~~a~~~~~~~~~~s~~~~~~~~~~p~~ 208 (952)
..|.+.++- |.++++.-.|+|..|-|
T Consensus 69 ~~al~~S~~-levsedg~kVRr~~~~~ 94 (101)
T 2cqk_A 69 LEVLRSSPM-VQVDEKGEKVRPSHKRC 94 (101)
T ss_dssp HHHHHHSSS-EEECSSSSEEEECCSCC
T ss_pred HHHHHhCCc-EEEcCCCCeeeeCCCCC
Confidence 888887665 89999999999998865
No 339
>2l3j_A Double-stranded RNA-specific editase 1; editing, dsRNA recognition, DSRBM, hydrolase-RNA complex; NMR {Rattus norvegicus}
Probab=93.11 E-value=0.14 Score=53.54 Aligned_cols=66 Identities=23% Similarity=0.218 Sum_probs=46.7
Q ss_pred ChHhHHHHhccCceeEEEeeeeccccCCCCccccCCCCCceEEEeeecCCceeeeccccccchHHHHHHHHHHHHcCCCC
Q 002218 17 TPKAIIVQKFGRNAQFTVDEVQDVVQNGCPGLAIPQKGPCLYRCSLQLPEFSVVSETFKKKKDAEQSAAEKALEKLGIDP 96 (952)
Q Consensus 17 tpka~~~q~~g~~~~y~~~ev~~~~~~~~~~~~~~q~~~~~~~c~l~lp~~~v~~~~~~~kkdaeq~aa~~al~klg~~~ 96 (952)
||--.++|. ...-.|++.+... |.--| .|.|.+.+.+.. ..|.-+-||+|||.||+.||++|..-+
T Consensus 8 ~~l~~l~e~-~~~p~Y~~~~~~G-----------p~H~~-~F~~~v~v~g~~-~~G~G~SKK~Aeq~AA~~al~~l~~~~ 73 (236)
T 2l3j_A 8 NALMQLNEI-KPGLQYMLLSQTG-----------PVHAP-LFVMSVEVNGQV-FEGSGPTKKKAKLHAAEKALRSFVQFP 73 (236)
T ss_dssp HHHHHHHHH-CSSCEEEEEEEES-----------CTTSC-EEEEEEEETTEE-EEEEESHHHHHHHHHHHHHHHHHTTCS
T ss_pred CHHHHHhhc-CCCceEEEEeccC-----------CCCCC-eEEEEEEECCEE-EEEecCChHHHHHHHHHHHHHHHHhcc
Confidence 344455554 3445787753221 22233 899999998865 489999999999999999999998654
No 340
>1yat_A FK506 binding protein; HET: FK5; 2.50A {Saccharomyces cerevisiae} SCOP: d.26.1.1
Probab=93.06 E-value=0.28 Score=44.91 Aligned_cols=90 Identities=27% Similarity=0.426 Sum_probs=64.2
Q ss_pred CCcc-CCCCceeEEEEEEEEeecccchhhhhccc----cceEEEeccCccchhhhhhhhhccccccceecccCCchhhhh
Q 002218 577 SGIY-PSNGCLSFISYSVSLVIEGETMKELLESR----EEFEFEMGTGAVIPQVEVVTAQMSVGQSACFCKELPPQELIL 651 (952)
Q Consensus 577 ~~~~-p~~gs~~~i~y~~~l~~~~~~~~~~~e~~----~~~~fe~g~~a~~~~l~~v~~q~sv~q~~~~~~~l~~~~l~l 651 (952)
+|-- |..|+.+.|.|...+ .+|+ .+++. ..|+|.+|.+.+.+-++..+..|.+|..+.|. +||..-+=
T Consensus 17 ~g~~~~~~gd~V~v~y~~~~-~dG~----~~d~s~~~~~p~~f~lG~~~~i~g~e~~l~gm~~Ge~~~v~--ip~~~ayG 89 (113)
T 1yat_A 17 DGATFPKTGDLVTIHYTGTL-ENGQ----KFDSSVDRGSPFQCNIGVGQVIKGWDVGIPKLSVGEKARLT--IPGPYAYG 89 (113)
T ss_dssp CSSCCCCTTCEEEEEEEEEE-TTSC----EEEESTTTTCCEEEETTSSSSCHHHHHHGGGCCTTCEEEEE--ECGGGTTT
T ss_pred CCcccCCCCCEEEEEEEEEE-CCCC----EEEecCCCCCcEEEEeCCCCccHHHHHHHhCCCCCCEEEEE--ECHHHCcC
Confidence 4555 999999999999997 3454 44443 57999999999999999999999999999887 55543322
Q ss_pred hhccCcccchhcccccccccceeeeecc
Q 002218 652 AAADDSARTFSLLSSRACCLEYHITLLR 679 (952)
Q Consensus 652 Aa~~~~~~DiSlLs~d~~~LEyyI~LL~ 679 (952)
.... -..+|..+. +.|.|.++.
T Consensus 90 ~~~~-----~~~Ip~~~~-l~f~vel~~ 111 (113)
T 1yat_A 90 PRGF-----PGLIPPNST-LVFDVELLK 111 (113)
T ss_dssp TTCB-----TTTBCTTCC-EEEEEEEEE
T ss_pred CCCC-----CCCcCCCCe-EEEEEEEEE
Confidence 1110 012344444 677777654
No 341
>1qu6_A Protein kinase PKR; dsRNA-binding domain, solution structure, transferase; NMR {Homo sapiens} SCOP: d.50.1.1 d.50.1.1
Probab=92.73 E-value=0.097 Score=52.38 Aligned_cols=66 Identities=18% Similarity=0.122 Sum_probs=43.9
Q ss_pred CCCChHhHHHH---hccCceeEEEeeeeccccCCCCccccCCCCCceEEEeeecCCceeeeccccccchHHHHHHHHHHH
Q 002218 14 MKLTPKAIIVQ---KFGRNAQFTVDEVQDVVQNGCPGLAIPQKGPCLYRCSLQLPEFSVVSETFKKKKDAEQSAAEKALE 90 (952)
Q Consensus 14 ~~~tpka~~~q---~~g~~~~y~~~ev~~~~~~~~~~~~~~q~~~~~~~c~l~lp~~~v~~~~~~~kkdaeq~aa~~al~ 90 (952)
+...||.++++ |-+-...|++. +.| |. .+-.|.|.+.+-+..+..|+-+-||+|+|.||+.||+
T Consensus 102 ~~~n~~~~L~E~~qk~~~~~~Y~~~------~~G------~~-h~~~F~~~v~v~~~~~~~g~g~sKK~Ak~~AA~~al~ 168 (179)
T 1qu6_A 102 SMGNYIGLINRIAQKKRLTVNYEQC------ASG------VH-GPEGFHYKCKMGQKEYSIGTGSTKQEAKQLAAKLAYL 168 (179)
T ss_dssp CCCCCHHHHHHHHHHSCCEEEEEEE------EEC------SS-SSSEEEEEEEEETTBCCEEEESSHHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHhcCCcceEEec------CcC------CC-CCCeEEEEEEECCEEEeeEEECCHHHHHHHHHHHHHH
Confidence 34578888775 44444456542 222 11 1235666666666666678888899999999999999
Q ss_pred Hc
Q 002218 91 KL 92 (952)
Q Consensus 91 kl 92 (952)
+|
T Consensus 169 ~L 170 (179)
T 1qu6_A 169 QI 170 (179)
T ss_dssp HH
T ss_pred HH
Confidence 98
No 342
>2lgo_A FKBP; infectious disease, isomerase, giardiasis, ssgcid, structura genomics, seattle structural genomics center for infectious; NMR {Giardia lamblia}
Probab=92.62 E-value=0.34 Score=46.00 Aligned_cols=90 Identities=26% Similarity=0.454 Sum_probs=63.1
Q ss_pred CCcc-CCCCceeEEEEEEEEeecccchhhhhccc----cceEEEeccCccchhhhhhhhhccccccceecccCCchhhhh
Q 002218 577 SGIY-PSNGCLSFISYSVSLVIEGETMKELLESR----EEFEFEMGTGAVIPQVEVVTAQMSVGQSACFCKELPPQELIL 651 (952)
Q Consensus 577 ~~~~-p~~gs~~~i~y~~~l~~~~~~~~~~~e~~----~~~~fe~g~~a~~~~l~~v~~q~sv~q~~~~~~~l~~~~l~l 651 (952)
+|-- |..|+.+.|.|...+ .+|+ .+++. ..++|.+|.|.+++-++..+..|.+|..+.|. +||..-+=
T Consensus 35 ~G~~~~~~gd~V~v~Y~g~~-~dG~----~fdss~~~~~p~~f~lG~g~vi~G~e~aL~gm~~Ge~~~v~--ip~~~aYG 107 (130)
T 2lgo_A 35 DGVTKPQAGKKVTVHYDGRF-PDGK----QFDSSRSRGKPFQFTLGAGEVIKGWDQGVATMTLGEKALFT--IPYQLAYG 107 (130)
T ss_dssp CSSCCCCTTSEEEEEEEEEC-TTSC----EEECTTTTTCCEEEETTSTTSCHHHHHHHHHSCTTEEEEEE--ECTTTSTT
T ss_pred CCCccCCCCCEEEEEEEEEE-CCCC----EEEccCcCCCCEEEEeCCCCccHHHHHHHhCCCCCCEEEEE--ECcHHHCC
Confidence 4555 999999999999997 3444 44443 57999999999999999999999999999886 55543332
Q ss_pred hhccCcccchhcccccccccceeeeecc
Q 002218 652 AAADDSARTFSLLSSRACCLEYHITLLR 679 (952)
Q Consensus 652 Aa~~~~~~DiSlLs~d~~~LEyyI~LL~ 679 (952)
.... . ..+|..+. +.|.|.++.
T Consensus 108 ~~~~---~--~~Ip~~~~-l~f~VeL~~ 129 (130)
T 2lgo_A 108 ERGY---P--PVIPPKAT-LVFEVELLA 129 (130)
T ss_dssp TTCC---S--TTSCSSCC-EEEEEEEEE
T ss_pred CCCC---C--CCcCCCCe-EEEEEEEEE
Confidence 1111 0 12344444 666666653
No 343
>2ppn_A FK506-binding protein 1A; high resolution protein structure, isomerase; 0.92A {Homo sapiens} SCOP: d.26.1.1 PDB: 1b6c_A 1a7x_A 1d7h_A 1d7i_A 1d7j_A* 1f40_A* 1fap_A* 1d6o_A* 1fkd_A* 1fkf_A* 1fkg_A* 1fkh_A* 1fki_A* 1fkj_A* 1fkr_A 1fks_A 1fkt_A 1j4h_A* 1j4i_A* 1j4r_A* ...
Probab=92.38 E-value=0.33 Score=43.83 Aligned_cols=91 Identities=30% Similarity=0.461 Sum_probs=64.6
Q ss_pred CCcc-CCCCceeEEEEEEEEeecccchhhhhccc----cceEEEeccCccchhhhhhhhhccccccceecccCCchhhhh
Q 002218 577 SGIY-PSNGCLSFISYSVSLVIEGETMKELLESR----EEFEFEMGTGAVIPQVEVVTAQMSVGQSACFCKELPPQELIL 651 (952)
Q Consensus 577 ~~~~-p~~gs~~~i~y~~~l~~~~~~~~~~~e~~----~~~~fe~g~~a~~~~l~~v~~q~sv~q~~~~~~~l~~~~l~l 651 (952)
+|-- |..|+.+.|.|+..+. +|+ .+++. ..++|.+|.+.+.+-++..+..|.+|..+.|. +||..-+=
T Consensus 11 ~g~~~~~~gd~V~v~y~~~~~-dG~----~~d~s~~~~~p~~f~lG~~~~i~g~~~~l~gm~~Ge~~~~~--ip~~~ayG 83 (107)
T 2ppn_A 11 DGRTFPKRGQTCVVHYTGMLE-DGK----KFDSSRDRNKPFKFMLGKQEVIRGWEEGVAQMSVGQRAKLT--ISPDYAYG 83 (107)
T ss_dssp CSSCCCCTTCEEEEEEEEEET-TSC----EEEEHHHHTSCEEEETTSCCSCHHHHHHHTTCCTTCEEEEE--ECGGGTTT
T ss_pred CCCcCCCCCCEEEEEEEEEEC-CCC----EEEecCCCCCCEEEEeCCCChHHHHHHHHhCCCCCCEEEEE--ECHHHccC
Confidence 3544 9999999999999985 554 44443 68999999999999999999999999999887 55543322
Q ss_pred hhccCcccchhcccccccccceeeeeccc
Q 002218 652 AAADDSARTFSLLSSRACCLEYHITLLRV 680 (952)
Q Consensus 652 Aa~~~~~~DiSlLs~d~~~LEyyI~LL~v 680 (952)
.... . ..+|..+. +.|.|.++.+
T Consensus 84 ~~~~---~--~~Ip~~~~-l~f~v~l~~v 106 (107)
T 2ppn_A 84 ATGH---P--GIIPPHAT-LVFDVELLKL 106 (107)
T ss_dssp TTCB---T--TTBCTTCC-EEEEEEEEEE
T ss_pred CCCC---C--CCcCCCCe-EEEEEEEEEe
Confidence 1110 0 12344444 6777776643
No 344
>2y78_A Peptidyl-prolyl CIS-trans isomerase; MIP, ppiase, virulence; HET: SO4 GOL; 0.91A {Burkholderia pseudomallei} PDB: 2ke0_A 2ko7_A* 2l2s_A* 4dz2_A* 4dz3_A*
Probab=92.06 E-value=0.33 Score=46.30 Aligned_cols=86 Identities=26% Similarity=0.368 Sum_probs=62.6
Q ss_pred ccccccccCCCCceeeec-cCCCCCCccCCCCceeEEEEEEEEeecccchhhhhccc----cceEEEeccCccchhhhhh
Q 002218 554 NSINTLNAIPEHGIYCLS-IGGPDSGIYPSNGCLSFISYSVSLVIEGETMKELLESR----EEFEFEMGTGAVIPQVEVV 628 (952)
Q Consensus 554 ~~~~~~~~~~~~~~~~~~-~~~~~~~~~p~~gs~~~i~y~~~l~~~~~~~~~~~e~~----~~~~fe~g~~a~~~~l~~v 628 (952)
++-..........+.... .+| .|--|..|..+.|.|...+ .+|+ .+++. ..|+|.+|.|.+++-++..
T Consensus 17 ~~~~~~~~~~~~gl~~~~l~~G--~G~~~~~gd~V~v~Y~g~~-~dG~----~fdss~~~~~p~~f~lG~g~vi~G~eea 89 (133)
T 2y78_A 17 RGSHMTVVTTESGLKYEDLTEG--SGAEARAGQTVSVHYTGWL-TDGQ----KFDSSKDRNDPFAFVLGGGMVIKGWDEG 89 (133)
T ss_dssp GTTTTCCEECTTSCEEEEEECC--SSCBCCTTSEEEEEEEEEE-TTSC----EEEETTTTTCCEEEETTSSSSCHHHHHH
T ss_pred cccCCCcEECCCCEEEEEEEcC--CCCCCCCCCEEEEEEEEEE-CCCC----EEeccCcCCCCEEEEeCCCChhHHHHHH
Confidence 333333344444444333 345 3778999999999999998 3444 44443 5799999999999999999
Q ss_pred hhhccccccceecccCCchh
Q 002218 629 TAQMSVGQSACFCKELPPQE 648 (952)
Q Consensus 629 ~~q~sv~q~~~~~~~l~~~~ 648 (952)
+..|.+|..+.|. +||..
T Consensus 90 L~gmk~Ge~~~v~--ip~~~ 107 (133)
T 2y78_A 90 VQGMKVGGVRRLT--IPPQL 107 (133)
T ss_dssp STTCBTTCEEEEE--ECGGG
T ss_pred HcCCCCCCEEEEE--ECcHH
Confidence 9999999999987 55544
No 345
>3kz7_A FK506-binding protein 3; FKPB ppiase rapamycin, isomerase, nucleus, phosphoprotein, R isomerase-inhibitor complex; HET: RAP; 1.95A {Mus musculus} SCOP: d.26.1.1 PDB: 1pbk_A*
Probab=92.05 E-value=0.61 Score=42.95 Aligned_cols=90 Identities=19% Similarity=0.349 Sum_probs=65.0
Q ss_pred ccCCCCceeEEEEEEEEeecccchhhhhccc-----------cceEEEeccCccchhhhhhhhhccccccceecccCCch
Q 002218 579 IYPSNGCLSFISYSVSLVIEGETMKELLESR-----------EEFEFEMGTGAVIPQVEVVTAQMSVGQSACFCKELPPQ 647 (952)
Q Consensus 579 ~~p~~gs~~~i~y~~~l~~~~~~~~~~~e~~-----------~~~~fe~g~~a~~~~l~~v~~q~sv~q~~~~~~~l~~~ 647 (952)
..|..|+.+.|.|...|. +|+ ++++. ..|+|.+|.+.+++-++..+..|.+|..+.+. +||.
T Consensus 18 ~~p~~gd~V~v~Y~g~~~-dG~----~fdss~~~~~~~~~~~~p~~f~lG~~~~i~G~e~~l~gm~~Ge~~~v~--ip~~ 90 (119)
T 3kz7_A 18 NFPKKGDVVHCWYTGTLP-DGT----VFDTNIQTSSKKKKNAKPLSFKVGVGKVIRGWDEALLTMSKGEKARLE--IEPE 90 (119)
T ss_dssp CCCCTTCEEEEEEEEECT-TSC----EEEECCCCSSSTTTTCCCEEEETTSSSSCHHHHHHHTTCCTTCEEEEE--ECGG
T ss_pred CcCCCCCEEEEEEEEEEC-CCC----EEEeccccccccccCCCCEEEEECCCChhHHHHHHHhCCCCCCEEEEE--ECcH
Confidence 579999999999999983 443 44543 67999999999999999999999999999887 5655
Q ss_pred hhhhhhccCcccchhcccccccccceeeeeccc
Q 002218 648 ELILAAADDSARTFSLLSSRACCLEYHITLLRV 680 (952)
Q Consensus 648 ~l~lAa~~~~~~DiSlLs~d~~~LEyyI~LL~v 680 (952)
.-+=... ..-..++-.+. +.|.|.++.+
T Consensus 91 ~aYG~~g----~~~~~Ip~~~~-l~f~veL~~i 118 (119)
T 3kz7_A 91 WAYGKKG----QPDAKIPPNTK-LIFEVELVDI 118 (119)
T ss_dssp GTTCTTC----BGGGTBCTTCC-EEEEEEEEEE
T ss_pred HhcCCCC----CCCCccCcCCe-EEEEEEEEEe
Confidence 4332211 11112344555 7777777653
No 346
>3o5q_A Peptidyl-prolyl CIS-trans isomerase FKBP5; FK-506 binding domain, HSP90 cochaperone, immunophiline, PEP prolyl isomerase; 0.96A {Homo sapiens} PDB: 3o5m_A 3o5l_A 3o5o_A 3o5p_A 3o5r_A* 4drk_A* 4drm_A* 4drn_A* 4dro_A* 4drp_A* 4drq_A* 3o5j_A 3o5g_A 3o5i_A 3o5k_A
Probab=91.99 E-value=0.34 Score=45.65 Aligned_cols=91 Identities=27% Similarity=0.393 Sum_probs=66.1
Q ss_pred CCc-cCCCCceeEEEEEEEEeecccchhhhhcc----ccceEEEeccCccchhhhhhhhhccccccceecccCCchhhhh
Q 002218 577 SGI-YPSNGCLSFISYSVSLVIEGETMKELLES----REEFEFEMGTGAVIPQVEVVTAQMSVGQSACFCKELPPQELIL 651 (952)
Q Consensus 577 ~~~-~p~~gs~~~i~y~~~l~~~~~~~~~~~e~----~~~~~fe~g~~a~~~~l~~v~~q~sv~q~~~~~~~l~~~~l~l 651 (952)
+|- .|..|+.+.|.|...+. +|+ ++++ ...|+|.+|.|.+++-++..+..|.+|..+.+. +||..-+=
T Consensus 30 ~G~~~p~~gd~V~v~Y~g~~~-dG~----~fdss~~~~~p~~f~lG~g~~i~G~e~~l~gm~~Ge~~~v~--ip~~~aYG 102 (128)
T 3o5q_A 30 NGEETPMIGDKVYVHYKGKLS-NGK----KFDSSHDRNEPFVFSLGKGQVIKAWDIGVATMKKGEICHLL--CKPEYAYG 102 (128)
T ss_dssp SSSCCCCTTCEEEEEEEEEET-TSC----EEEEHHHHTSCEEEETTSSSSCHHHHHHHTTCCTTCEEEEE--ECGGGTTT
T ss_pred CCCccCCCCCEEEEEEEEEEC-CCC----EEEecCCCCCCEEEEECCCCccHHHHHHHhcCCCCCEEEEE--EChHHcCC
Confidence 354 79999999999999984 443 4444 356999999999999999999999999999887 56654442
Q ss_pred hhccCcccchhcccccccccceeeeeccc
Q 002218 652 AAADDSARTFSLLSSRACCLEYHITLLRV 680 (952)
Q Consensus 652 Aa~~~~~~DiSlLs~d~~~LEyyI~LL~v 680 (952)
..... ..+|-.+. +.|.|.++.+
T Consensus 103 ~~g~~-----~~Ip~~~~-l~f~vel~~i 125 (128)
T 3o5q_A 103 SAGSL-----PKIPSNAT-LFFEIELLDF 125 (128)
T ss_dssp TTCBT-----TTBCTTCC-EEEEEEEEEE
T ss_pred CCCCC-----CCcCCCCE-EEEEEEEEEe
Confidence 22111 13444555 7777777654
No 347
>3o5e_A Peptidyl-prolyl CIS-trans isomerase FKBP5; FK-506 binding domain, HSP90 cochaperone, immunophiline, PEP prolyl isomerase; 1.60A {Homo sapiens} PDB: 3o5f_A
Probab=91.47 E-value=0.42 Score=46.10 Aligned_cols=91 Identities=27% Similarity=0.392 Sum_probs=66.9
Q ss_pred CCc-cCCCCceeEEEEEEEEeecccchhhhhccc----cceEEEeccCccchhhhhhhhhccccccceecccCCchhhhh
Q 002218 577 SGI-YPSNGCLSFISYSVSLVIEGETMKELLESR----EEFEFEMGTGAVIPQVEVVTAQMSVGQSACFCKELPPQELIL 651 (952)
Q Consensus 577 ~~~-~p~~gs~~~i~y~~~l~~~~~~~~~~~e~~----~~~~fe~g~~a~~~~l~~v~~q~sv~q~~~~~~~l~~~~l~l 651 (952)
.|- .|..|+.|.|.|...|. +|+ ++++. ..|+|.+|.|.+++-++..+..|.+|..+.|. +||..-+=
T Consensus 46 ~G~~~p~~gd~V~v~Y~g~~~-dG~----~fdss~~~~~p~~f~lG~g~~i~G~e~~l~gm~~Ge~~~v~--ipp~~aYG 118 (144)
T 3o5e_A 46 NGEETPMIGDKVYVHYKGKLS-NGK----KFDSSHDRNEPFVFSLGKGQVIKAWDIGVATMKKGEICHLL--CKPEYAYG 118 (144)
T ss_dssp BSSCCCCTTCEEEEEEEEECT-TSC----EEEESGGGTSCEEEETTSSSSCHHHHHHHTTCCBTCEEEEE--ECGGGTTT
T ss_pred CCCccCCCCCEEEEEEEEEEC-CCC----EEEeecccCCCeEEEeCCCcccHHHHHHHhCCCCCCEEEEE--EChHHCcC
Confidence 354 79999999999999984 443 44443 45999999999999999999999999999987 56654442
Q ss_pred hhccCcccchhcccccccccceeeeeccc
Q 002218 652 AAADDSARTFSLLSSRACCLEYHITLLRV 680 (952)
Q Consensus 652 Aa~~~~~~DiSlLs~d~~~LEyyI~LL~v 680 (952)
..... ..+|-.+. +.|.|.++.+
T Consensus 119 ~~g~~-----~~Ipp~~~-L~f~VeL~~i 141 (144)
T 3o5e_A 119 SAGSL-----PKIPSNAT-LFFEIELLDF 141 (144)
T ss_dssp TTCBT-----TTBCTTCC-EEEEEEEEEE
T ss_pred CCCCC-----CCcCCCCe-EEEEEEEEEe
Confidence 22211 23455555 7888877754
No 348
>2a11_A Ribonuclease III, RNAse III; nuclease domain, structural genomic protein structure initiative; 2.10A {Mycobacterium tuberculosis}
Probab=91.40 E-value=0.036 Score=57.75 Aligned_cols=38 Identities=26% Similarity=0.239 Sum_probs=0.0
Q ss_pred eEEEeeecCCceeeeccccccchHHHHHHHHHHHHcCC
Q 002218 57 LYRCSLQLPEFSVVSETFKKKKDAEQSAAEKALEKLGI 94 (952)
Q Consensus 57 ~~~c~l~lp~~~v~~~~~~~kkdaeq~aa~~al~klg~ 94 (952)
.|.|.+.+.+-.+.+|.-+-||+|||.||+.||++|+-
T Consensus 194 ~F~v~v~v~g~~~~~G~G~skk~Ae~~AA~~AL~~L~~ 231 (242)
T 2a11_A 194 EFTAVVVVMDSEYGSGVGRSKKEAEQKAAAAAWKALEV 231 (242)
T ss_dssp --------------------------------------
T ss_pred eEEEEEEECCEEEEEeeeCCHHHHHHHHHHHHHHHHhh
Confidence 89999999887666799999999999999999999974
No 349
>2px2_A Genome polyprotein [contains: capsid protein C (core protein); envelope protein M...; methyltransferase, SAH; HET: SAH; 2.00A {Murray valley encephalitis virus} PDB: 2px4_A* 2px5_A* 2pxa_A* 2pxc_A* 2px8_A* 2oy0_A*
Probab=91.09 E-value=0.28 Score=52.66 Aligned_cols=125 Identities=10% Similarity=0.031 Sum_probs=68.8
Q ss_pred CCchhHHHHHHHHHHHhhcCCCCEEEEEcCccchHHHHHhcCCCCCceEEEEeCChHHHHHHHHHHhhhhhcccccCCCC
Q 002218 693 FSPPLSKQRVEYALQHIKESCATTLVDFGCGSGSLLDSLLDYPTALEKIVGVDISQKSLSRAAKIIHSKLSKKLDAAVPC 772 (952)
Q Consensus 693 F~PPL~~QR~efVldlL~~~k~krVLDIGCGeG~ll~~LAr~g~~~~qVVGVDISeemLe~ArkrLsa~la~~~~~l~Pr 772 (952)
-|+.-.......+.+.--..++.+|||+||+.|.++...++.. ....|.|.++..+. . +.+ ..|.
T Consensus 53 ~yRSRAayKL~EIdeK~likpg~~VVDLGaAPGGWSQvAa~~~-~vg~V~G~vig~D~-~-----~~P--------~~~~ 117 (269)
T 2px2_A 53 HPVSRGTAKLRWLVERRFVQPIGKVVDLGCGRGGWSYYAATMK-NVQEVRGYTKGGPG-H-----EEP--------MLMQ 117 (269)
T ss_dssp CCSSTHHHHHHHHHHTTSCCCCEEEEEETCTTSHHHHHHTTST-TEEEEEEECCCSTT-S-----CCC--------CCCC
T ss_pred CcccHHHHHHHHHHHcCCCCCCCEEEEcCCCCCHHHHHHhhhc-CCCCceeEEEcccc-c-----cCC--------Cccc
Confidence 3444444444555544323467899999999999999998862 12345566654431 0 000 0000
Q ss_pred -CCCccEEEEEc-CccccCCCCCCccEEEEccccccCC---hhHHHH--HHHHHHHccCCCE--EEEEecCC
Q 002218 773 -TDVKSAVLFDG-SITVFDSRLHGFDIGTCLEVIEHME---EDEASQ--FGNIVLSSFRPRI--LIVSTPNY 835 (952)
Q Consensus 773 -~~~~nVtf~qG-Da~dLpf~d~sFDVVVcieVIEHL~---dD~l~~--L~eeI~RvLKPG~--LIISTPN~ 835 (952)
.+..-+.|.+| |+.+++ ...+|+|+|-..= .-. -|.... ..+-+.++|+||. +++=+-..
T Consensus 118 ~~Gv~~i~~~~G~Df~~~~--~~~~DvVLSDMAP-nSG~~~vD~~Rs~~aL~~A~~~Lk~gG~~FvvKVFqg 186 (269)
T 2px2_A 118 SYGWNIVTMKSGVDVFYKP--SEISDTLLCDIGE-SSPSAEIEEQRTLRILEMVSDWLSRGPKEFCIKILCP 186 (269)
T ss_dssp STTGGGEEEECSCCGGGSC--CCCCSEEEECCCC-CCSCHHHHHHHHHHHHHHHHHHHTTCCSEEEEEESCT
T ss_pred CCCceEEEeeccCCccCCC--CCCCCEEEeCCCC-CCCccHHHHHHHHHHHHHHHHHhhcCCcEEEEEECCC
Confidence 12223466668 998754 4579999994321 111 111111 2344558999974 66655553
No 350
>3n3w_A Ribonuclease III; nuclease domain, ribonuclase III, IDP90862, csgid, structura genomics; 2.21A {Campylobacter jejuni subsp}
Probab=90.85 E-value=0.044 Score=57.73 Aligned_cols=37 Identities=38% Similarity=0.418 Sum_probs=0.0
Q ss_pred eEEEeeecCCceeeeccccccchHHHHHHHHHHHHcC
Q 002218 57 LYRCSLQLPEFSVVSETFKKKKDAEQSAAEKALEKLG 93 (952)
Q Consensus 57 ~~~c~l~lp~~~v~~~~~~~kkdaeq~aa~~al~klg 93 (952)
.|.|.+.+.+-.+.+|.-+-||+|||.||+.||++|+
T Consensus 210 ~F~v~v~v~g~~~~~G~G~SKK~Aeq~AA~~AL~~L~ 246 (248)
T 3n3w_A 210 QFEIALMLDGKELARAIAGSKKEAQQMAAKIALEKLG 246 (248)
T ss_dssp -------------------------------------
T ss_pred eEEEEEEECCEEEEEeeeCCHHHHHHHHHHHHHHHHH
Confidence 8999999988666678889999999999999999986
No 351
>3c4b_A Endoribonuclease dicer; RNAse, dsRNA binding protein, ATP-binding, endonuclease, HEL hydrolase, nucleotide-binding, phosphoprotein, RN binding; HET: MSE; 1.68A {Mus musculus} PDB: 3c4t_A 2eb1_A
Probab=90.81 E-value=0.27 Score=51.73 Aligned_cols=64 Identities=17% Similarity=0.145 Sum_probs=46.3
Q ss_pred CCChHhHHHHhccCceeEEEeeeeccccCCCCccccCCCCCceEEEeeecCCceeeeccccccchHHHHHHHHHHHHcC
Q 002218 15 KLTPKAIIVQKFGRNAQFTVDEVQDVVQNGCPGLAIPQKGPCLYRCSLQLPEFSVVSETFKKKKDAEQSAAEKALEKLG 93 (952)
Q Consensus 15 ~~tpka~~~q~~g~~~~y~~~ev~~~~~~~~~~~~~~q~~~~~~~c~l~lp~~~v~~~~~~~kkdaeq~aa~~al~klg 93 (952)
.-||+-.+.|..+....|..++. ...| .|.+.+.+.+-.+.+|+=+-||.|||.||+.||++|+
T Consensus 199 ~k~~l~el~~~~~~~~~~~~~~~--------------~~~~-~f~v~v~v~~~~~~~G~G~SkK~Aeq~AA~~AL~~l~ 262 (265)
T 3c4b_A 199 PRSPVRELLEMEPETAKFSPAER--------------TYDG-KVRVTVEVVGKGKFKGVGRSYRIAKSAAARRALRSLK 262 (265)
T ss_dssp CCCHHHHHHHHCTTTEEECCCEE--------------CTTS-CEEEEEEETTTEEEEEEESSHHHHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHhccCCceeeeccc--------------cCCC-cEEEEEEEecceEEEEeeCCHHHHHHHHHHHHHHHHh
Confidence 35788888887765333322210 1122 6888888888767778889999999999999999985
No 352
>1g55_A DNA cytosine methyltransferase DNMT2; human DNA methyltransferase homologue; HET: DNA SAH; 1.80A {Homo sapiens} SCOP: c.66.1.26
Probab=90.81 E-value=0.15 Score=55.73 Aligned_cols=71 Identities=11% Similarity=0.118 Sum_probs=53.4
Q ss_pred CCEEEEEcCccchHHHHHhcCCCCCceEEEEeCChHHHHHHHHHHhhhhhcccccCCCCCCCccEEEEEcCccccCCCC-
Q 002218 714 ATTLVDFGCGSGSLLDSLLDYPTALEKIVGVDISQKSLSRAAKIIHSKLSKKLDAAVPCTDVKSAVLFDGSITVFDSRL- 792 (952)
Q Consensus 714 ~krVLDIGCGeG~ll~~LAr~g~~~~qVVGVDISeemLe~ArkrLsa~la~~~~~l~Pr~~~~nVtf~qGDa~dLpf~d- 792 (952)
..+|+|+-||.|.+...+.+.|.....|+++|+++.+++..+.+.. +..++.+|+.++....
T Consensus 2 ~~~v~dLFaG~Gg~~~g~~~~G~~~~~v~~~E~d~~a~~~~~~N~~-----------------~~~~~~~Di~~~~~~~~ 64 (343)
T 1g55_A 2 PLRVLELYSGVGGMHHALRESCIPAQVVAAIDVNTVANEVYKYNFP-----------------HTQLLAKTIEGITLEEF 64 (343)
T ss_dssp CEEEEEETCTTCHHHHHHHHHTCSEEEEEEECCCHHHHHHHHHHCT-----------------TSCEECSCGGGCCHHHH
T ss_pred CCeEEEeCcCccHHHHHHHHCCCCceEEEEEeCCHHHHHHHHHhcc-----------------ccccccCCHHHccHhHc
Confidence 3589999999999999998876222579999999999999877532 2346788888765321
Q ss_pred --CCccEEEEc
Q 002218 793 --HGFDIGTCL 801 (952)
Q Consensus 793 --~sFDVVVci 801 (952)
..+|+|+..
T Consensus 65 ~~~~~D~l~~g 75 (343)
T 1g55_A 65 DRLSFDMILMS 75 (343)
T ss_dssp HHHCCSEEEEC
T ss_pred CcCCcCEEEEc
Confidence 268999874
No 353
>2d9f_A FK506-binding protein 8 variant; FKBP, rapamycin, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=90.33 E-value=0.32 Score=46.31 Aligned_cols=105 Identities=20% Similarity=0.321 Sum_probs=74.1
Q ss_pred eeccCCCCCCccCCCCceeEEEEEEEEeecccchhhhhccccceEEEeccCccchhhhhhhhhccccccceecccCCchh
Q 002218 569 CLSIGGPDSGIYPSNGCLSFISYSVSLVIEGETMKELLESREEFEFEMGTGAVIPQVEVVTAQMSVGQSACFCKELPPQE 648 (952)
Q Consensus 569 ~~~~~~~~~~~~p~~gs~~~i~y~~~l~~~~~~~~~~~e~~~~~~fe~g~~a~~~~l~~v~~q~sv~q~~~~~~~l~~~~ 648 (952)
..-.+|......|..|..+.|.|+..+ .+|+ .+++...|+|.+|.|.+++-++..+..|.+|..+.|. +||..
T Consensus 22 ~vl~~G~G~~~~~~~gd~V~v~Y~g~~-~dG~----~fds~~p~~f~lG~g~~i~G~e~~L~gm~~Ge~~~v~--ip~~~ 94 (135)
T 2d9f_A 22 KTLVPGPPGSSRPVKGQVVTVHLQTSL-ENGT----RVQEEPELVFTLGDCDVIQALDLSVPLMDVGETAMVT--ADSKY 94 (135)
T ss_dssp EEEECCCSSCCCCCTTSEEEEEEEEEE-SSSC----EEEEEEEEEEETTSCCSCTTTTTTGGGSCTTCEEEEE--ECHHH
T ss_pred EEEEcCCCCCccCCCCCEEEEEEEEEE-CCCC----EEecCCCEEEEeCCCChhHHHHHHHhCCCCCCEEEEE--EChhH
Confidence 334456433348999999999999997 3453 5677889999999999999999999999999998886 56543
Q ss_pred hhhhhccCcccchhcccccccccceeeeecccCCChh
Q 002218 649 LILAAADDSARTFSLLSSRACCLEYHITLLRVTEPPE 685 (952)
Q Consensus 649 l~lAa~~~~~~DiSlLs~d~~~LEyyI~LL~v~ep~E 685 (952)
-+=... ... ..++-... +.|.|.++.+..+.+
T Consensus 95 aYG~~~-~~~---~~Ip~~~~-l~f~vel~~v~~~~~ 126 (135)
T 2d9f_A 95 CYGPQG-SRS---PYIPPHAA-LCLEVTLKTAVDRPD 126 (135)
T ss_dssp HTCTTC-CSS---SCCCTTCC-EEEEEEEEEEESSCS
T ss_pred ccCcCC-cCC---CccCCCCe-EEEEEEEEEeecCCc
Confidence 321111 010 12334444 888888887666443
No 354
>2jwx_A FKBP38NTD, FK506-binding protein 8 variant; apoptosis, beta barrel, central helix, with flexible N-terminal extension, isomerase; NMR {Homo sapiens}
Probab=90.02 E-value=0.61 Score=46.08 Aligned_cols=101 Identities=20% Similarity=0.288 Sum_probs=71.6
Q ss_pred eeeccCCCCCCccCCCCceeEEEEEEEEeecccchhhhhccccceEEEeccCccchhhhhhhhhccccccceecccCCch
Q 002218 568 YCLSIGGPDSGIYPSNGCLSFISYSVSLVIEGETMKELLESREEFEFEMGTGAVIPQVEVVTAQMSVGQSACFCKELPPQ 647 (952)
Q Consensus 568 ~~~~~~~~~~~~~p~~gs~~~i~y~~~l~~~~~~~~~~~e~~~~~~fe~g~~a~~~~l~~v~~q~sv~q~~~~~~~l~~~ 647 (952)
+-.-.+|...+..|..|+.|.|.|...|. +|+ .++|...++|.+|.|.+++-++..+..|.+|..+.|. +||.
T Consensus 47 ~~vl~~G~G~~~~p~~gd~V~v~Y~g~l~-dG~----~fds~~p~~f~lG~g~vi~G~eeaL~gMk~Ge~~~v~--IP~~ 119 (157)
T 2jwx_A 47 KKTLVPGPPGSSRPVKGQVVTVHLQTSLE-NGT----RVQEEPELVFTLGDCDVIQALDLSVPLMDVGETAMVT--ADSK 119 (157)
T ss_dssp EEEEECCSTTSCCCCTTEEEEEEEEEECT-TSC----EEEEEEEEEEETTTTSSCHHHHHHTTTSCTTCEEEEE--ECGG
T ss_pred EEEEEccCCCccCCCCCCEEEEEEEEEEC-CCC----EeecCCCEEEEeCCCChhHHHHHHHcCCCCCCEEEEE--ECch
Confidence 34445565445589999999999999973 443 5777889999999999999999999999999999887 4554
Q ss_pred hhhhhhccCcccchhcccccccccceeeeeccc
Q 002218 648 ELILAAADDSARTFSLLSSRACCLEYHITLLRV 680 (952)
Q Consensus 648 ~l~lAa~~~~~~DiSlLs~d~~~LEyyI~LL~v 680 (952)
.-+=.. +... ..++-.+. +.|.|.++.+
T Consensus 120 ~aYG~~-g~~~---~~IPp~st-LiF~VeL~~i 147 (157)
T 2jwx_A 120 YCYGPQ-GSRS---PYIPPHAA-LCLEVTLKTA 147 (157)
T ss_dssp GTTTTT-CCSS---SCCCTTCC-EEEEEEEEEE
T ss_pred hcCCcc-cccC---CCcCCCCe-EEEEEEEEEE
Confidence 332111 1000 12344444 7777877754
No 355
>3b7x_A FK506-binding protein 6; isomerase, repeat, rotamase, TPR repeat, williams-beuren syndrome, structural genomics consortium, SGC; 2.10A {Homo sapiens}
Probab=89.78 E-value=0.33 Score=46.17 Aligned_cols=93 Identities=17% Similarity=0.189 Sum_probs=63.2
Q ss_pred CCccCCCCceeEEEEEEEEeecccchhhhhcc----ccceEEEeccCccchhhhhhhhhccccccceecccCCchhhhhh
Q 002218 577 SGIYPSNGCLSFISYSVSLVIEGETMKELLES----REEFEFEMGTGAVIPQVEVVTAQMSVGQSACFCKELPPQELILA 652 (952)
Q Consensus 577 ~~~~p~~gs~~~i~y~~~l~~~~~~~~~~~e~----~~~~~fe~g~~a~~~~l~~v~~q~sv~q~~~~~~~l~~~~l~lA 652 (952)
+|--|..|+.+.|.|+..|..+|+ .+++ ...|+|.+|.|.+++-++..+..|.+|..+.|. +||..-+=.
T Consensus 37 ~g~~~~~gd~V~v~Y~g~l~~~G~----~fdss~~~~~p~~f~lG~g~~i~G~e~aL~gm~~Ge~~~v~--ip~~~aYG~ 110 (134)
T 3b7x_A 37 AGDLVAPDASVLVKYSGYLEHMDR----PFDSNYFRKTPRLMKLGEDITLWGMELGLLSMRRGELARFL--FKPNYAYGT 110 (134)
T ss_dssp EEEECCTTCEEEEEEEEECTTCSS----CSEEC-------CEEC-CCCCCHHHHHHHHTCEETCEEEEE--ECGGGTTTT
T ss_pred CCCCCCCCCEEEEEEEEEECCCCe----EEEecCCCCCCEEEEcCCcchhHHHHHHHhCCCCCCEEEEE--ECHHHCcCC
Confidence 467788999999999999865554 3444 356999999999999999999999999999886 565432211
Q ss_pred hccCcccchhcccccccccceeeeecccC
Q 002218 653 AADDSARTFSLLSSRACCLEYHITLLRVT 681 (952)
Q Consensus 653 a~~~~~~DiSlLs~d~~~LEyyI~LL~v~ 681 (952)
... . ..+|.... +.|.|.++.+.
T Consensus 111 ~~~---~--~~Ip~~~~-l~f~VeL~~i~ 133 (134)
T 3b7x_A 111 LGC---P--PLIPPNTT-VLFEIELLDFL 133 (134)
T ss_dssp TCB---T--TTBCTTCC-EEEEEEEEEEC
T ss_pred CCC---C--CCcCcCCe-EEEEEEEEEEe
Confidence 110 0 12445555 77878777653
No 356
>3g7u_A Cytosine-specific methyltransferase; DNA-binding, NAD-binding, structural GENO protein structure initiative, PSI; 1.75A {Escherichia coli O157}
Probab=89.48 E-value=0.47 Score=52.72 Aligned_cols=68 Identities=13% Similarity=0.125 Sum_probs=52.9
Q ss_pred CEEEEEcCccchHHHHHhcCCCCCceEEEEeCChHHHHHHHHHHhhhhhcccccCCCCCCCccEEEEEcCccccCC----
Q 002218 715 TTLVDFGCGSGSLLDSLLDYPTALEKIVGVDISQKSLSRAAKIIHSKLSKKLDAAVPCTDVKSAVLFDGSITVFDS---- 790 (952)
Q Consensus 715 krVLDIGCGeG~ll~~LAr~g~~~~qVVGVDISeemLe~ArkrLsa~la~~~~~l~Pr~~~~nVtf~qGDa~dLpf---- 790 (952)
.+++|+-||.|.+...+.+.| ...|.++|+++.+++..+.+. ++..++++|+.++..
T Consensus 3 ~~vidLFsG~GGlslG~~~aG--~~~v~avE~d~~a~~t~~~N~-----------------~~~~~~~~DI~~~~~~~~~ 63 (376)
T 3g7u_A 3 LNVIDLFSGVGGLSLGAARAG--FDVKMAVEIDQHAINTHAINF-----------------PRSLHVQEDVSLLNAEIIK 63 (376)
T ss_dssp CEEEEETCTTSHHHHHHHHHT--CEEEEEECSCHHHHHHHHHHC-----------------TTSEEECCCGGGCCHHHHH
T ss_pred CeEEEEccCcCHHHHHHHHCC--CcEEEEEeCCHHHHHHHHHhC-----------------CCCceEecChhhcCHHHHH
Confidence 589999999999999998877 256779999999988876542 245678889887643
Q ss_pred ----CCCCccEEEEc
Q 002218 791 ----RLHGFDIGTCL 801 (952)
Q Consensus 791 ----~d~sFDVVVci 801 (952)
....+|+|+..
T Consensus 64 ~~~~~~~~~D~i~gg 78 (376)
T 3g7u_A 64 GFFKNDMPIDGIIGG 78 (376)
T ss_dssp HHHCSCCCCCEEEEC
T ss_pred hhcccCCCeeEEEec
Confidence 23579999863
No 357
>3uf8_A Ubiquitin-like protein SMT3, peptidyl-prolyl CIS- isomerase; ssgcid, seattle structural genomics center for in disease; HET: FK5; 1.50A {Burkholderia pseudomallei} PDB: 4ggq_C* 3vaw_A* 3uqa_A* 4g50_A* 4fn2_A* 3uqb_A* 4giv_A* 1euv_B 3v60_A 3v61_A 3v62_A*
Probab=88.22 E-value=1.2 Score=45.82 Aligned_cols=90 Identities=27% Similarity=0.380 Sum_probs=65.7
Q ss_pred CCccCCCCceeEEEEEEEEeecccchhhhhccc----cceEEEeccCccchhhhhhhhhccccccceecccCCchhhhhh
Q 002218 577 SGIYPSNGCLSFISYSVSLVIEGETMKELLESR----EEFEFEMGTGAVIPQVEVVTAQMSVGQSACFCKELPPQELILA 652 (952)
Q Consensus 577 ~~~~p~~gs~~~i~y~~~l~~~~~~~~~~~e~~----~~~~fe~g~~a~~~~l~~v~~q~sv~q~~~~~~~l~~~~l~lA 652 (952)
+|.-|..|+.+.|.|+..+ .+|+ .+++. ..|+|.+|.|.+.+-++..+..|.+|..+.|. +||..-+=.
T Consensus 115 ~G~~~~~gd~V~v~Y~g~l-~dG~----~fdss~~~~~P~~f~lG~g~vi~G~eeaL~gM~~Ge~~~v~--Ipp~~aYG~ 187 (209)
T 3uf8_A 115 SGAEARAGQTVSVHYTGWL-TDGQ----KFDSSKDRNDPFAFVLGGGMVIKGWDEGVQGMKVGGVRRLT--IPPQLGYGA 187 (209)
T ss_dssp CSCBCCTTCEEEEEEEEEE-TTSC----EEEESGGGTCCEEEETTSSSSCHHHHHHHTTCBTTCEEEEE--ECGGGTTTT
T ss_pred CCCcCCCCCEEEEEEEEEE-CCCC----EEEEccccCCCEEEEeCCCccchhHHHHHhCCCCCCEEEEE--ECcHHhCCC
Confidence 6777999999999999998 3443 44443 45999999999999999999999999998887 566543322
Q ss_pred hccCcccchhcccccccccceeeeecc
Q 002218 653 AADDSARTFSLLSSRACCLEYHITLLR 679 (952)
Q Consensus 653 a~~~~~~DiSlLs~d~~~LEyyI~LL~ 679 (952)
... -..+|..+. +.|.|.++.
T Consensus 188 ~g~-----~~~IP~~s~-LvF~VeL~~ 208 (209)
T 3uf8_A 188 RGA-----AGVIPPNAT-LVFEVELLD 208 (209)
T ss_dssp TCB-----TTTBCTTCC-EEEEEEEEE
T ss_pred CCC-----CCCcCCCCe-EEEEEEEEE
Confidence 211 112445555 777777654
No 358
>1lss_A TRK system potassium uptake protein TRKA homolog; KTN domain, NAD, RCK domain, potassium transport, potassium channel, KTRA; HET: NAD; 2.30A {Methanocaldococcus jannaschii} SCOP: c.2.1.9
Probab=88.08 E-value=6.2 Score=35.52 Aligned_cols=102 Identities=21% Similarity=0.331 Sum_probs=58.8
Q ss_pred CCEEEEEcCcc-ch-HHHHHhcCCCCCceEEEEeCChHHHHHHHHHHhhhhhcccccCCCCCCCccEEEEEcCccccC--
Q 002218 714 ATTLVDFGCGS-GS-LLDSLLDYPTALEKIVGVDISQKSLSRAAKIIHSKLSKKLDAAVPCTDVKSAVLFDGSITVFD-- 789 (952)
Q Consensus 714 ~krVLDIGCGe-G~-ll~~LAr~g~~~~qVVGVDISeemLe~ArkrLsa~la~~~~~l~Pr~~~~nVtf~qGDa~dLp-- 789 (952)
..+|+=+|+|. |. ++..|.+.+ .+|+++|.+++.++..++.. .+.++.+|..+..
T Consensus 4 ~m~i~IiG~G~iG~~~a~~L~~~g---~~v~~~d~~~~~~~~~~~~~------------------~~~~~~~d~~~~~~l 62 (140)
T 1lss_A 4 GMYIIIAGIGRVGYTLAKSLSEKG---HDIVLIDIDKDICKKASAEI------------------DALVINGDCTKIKTL 62 (140)
T ss_dssp -CEEEEECCSHHHHHHHHHHHHTT---CEEEEEESCHHHHHHHHHHC------------------SSEEEESCTTSHHHH
T ss_pred CCEEEEECCCHHHHHHHHHHHhCC---CeEEEEECCHHHHHHHHHhc------------------CcEEEEcCCCCHHHH
Confidence 46888899864 32 234555666 78999999988766553311 2445667664422
Q ss_pred --CCCCCccEEEEccccccCChhHHHHHHHHHHHccCCCEEEEEecCCchhHHH
Q 002218 790 --SRLHGFDIGTCLEVIEHMEEDEASQFGNIVLSSFRPRILIVSTPNYEYNAIL 841 (952)
Q Consensus 790 --f~d~sFDVVVcieVIEHL~dD~l~~L~eeI~RvLKPG~LIISTPN~efN~lf 841 (952)
.....+|+|+..- +.+........+.+.+.++.+++.+-+.++...+
T Consensus 63 ~~~~~~~~d~vi~~~-----~~~~~~~~~~~~~~~~~~~~ii~~~~~~~~~~~l 111 (140)
T 1lss_A 63 EDAGIEDADMYIAVT-----GKEEVNLMSSLLAKSYGINKTIARISEIEYKDVF 111 (140)
T ss_dssp HHTTTTTCSEEEECC-----SCHHHHHHHHHHHHHTTCCCEEEECSSTTHHHHH
T ss_pred HHcCcccCCEEEEee-----CCchHHHHHHHHHHHcCCCEEEEEecCHhHHHHH
Confidence 1235789887752 2222223333466667877556656555554433
No 359
>2lkn_A AH receptor-interacting protein; FKBP-type domain, immunophilin homolog, protein binding; NMR {Homo sapiens}
Probab=88.07 E-value=0.76 Score=45.96 Aligned_cols=71 Identities=18% Similarity=0.292 Sum_probs=54.2
Q ss_pred CCccC--CCCceeEEEEEEEEeec-ccchhhhhccccceEEEeccCccchhhhhhhhhccccccceecccCCchhh
Q 002218 577 SGIYP--SNGCLSFISYSVSLVIE-GETMKELLESREEFEFEMGTGAVIPQVEVVTAQMSVGQSACFCKELPPQEL 649 (952)
Q Consensus 577 ~~~~p--~~gs~~~i~y~~~l~~~-~~~~~~~~e~~~~~~fe~g~~a~~~~l~~v~~q~sv~q~~~~~~~l~~~~l 649 (952)
+|-.| ..|+.|.+-|.-.|..+ |+----=.+.+.-|+|.+|.|-|+.-++..+..|.+|..++|. .||.-.
T Consensus 21 ~G~~p~~~~G~~V~vhY~g~l~d~~G~~FDsS~~rg~P~~f~lG~g~vI~Gwd~gl~~M~~Ge~~~~~--ipp~la 94 (165)
T 2lkn_A 21 RGELPDFQDGTKATFHYRTLHSDDEGTVLDDSRARGKPMELIIGKKFKLPVWETIVCTMREGEIAQFL--CDIKHV 94 (165)
T ss_dssp SSCCCCCCTTCEEEEECEEECSSSSCCEEEESTTTTCCEEEESSSSCSCSHHHHHHTTCCTTCEEEEE--CCHHHH
T ss_pred cCCCCCCCCCCEEEEEEEEEEeCCCccEEEecccCCCCEEEEecCCCccHHHHHHHhcCccCceEEEE--ECHHHh
Confidence 46555 47999999999999764 4311111122456999999999999999999999999999997 776543
No 360
>1r9h_A FKB-6, FK506 binding protein family; structural genomics, peptidylprolyl isomerase, PSI, protein structure initiative; 1.80A {Caenorhabditis elegans} SCOP: d.26.1.1
Probab=87.74 E-value=0.74 Score=43.83 Aligned_cols=93 Identities=24% Similarity=0.380 Sum_probs=67.2
Q ss_pred CCc-cCCCCceeEEEEEEEEeecccchhhhhcc----ccceEEEeccCccchhhhhhhhhccccccceecccCCchhhhh
Q 002218 577 SGI-YPSNGCLSFISYSVSLVIEGETMKELLES----REEFEFEMGTGAVIPQVEVVTAQMSVGQSACFCKELPPQELIL 651 (952)
Q Consensus 577 ~~~-~p~~gs~~~i~y~~~l~~~~~~~~~~~e~----~~~~~fe~g~~a~~~~l~~v~~q~sv~q~~~~~~~l~~~~l~l 651 (952)
+|. .|..|+.+.|.|+..+ .+|+ .+++ ...|+|.+|.+.+++-++..+..|.+|..+.|. +||..-+=
T Consensus 25 ~g~~~~~~gd~V~v~Y~g~~-~dG~----~fdss~~~~~p~~f~lG~~~vi~G~e~~l~gm~~Ge~~~v~--ip~~~aYG 97 (135)
T 1r9h_A 25 QGVVKPTTGTTVKVHYVGTL-ENGT----KFDSSRDRGDQFSFNLGRGNVIKGWDLGVATMTKGEVAEFT--IRSDYGYG 97 (135)
T ss_dssp BSSCCCCTTCEEEEEEEEEE-TTSC----EEEEHHHHTSCEEEETTTTSSCHHHHHHHTTCCBTCEEEEE--ECGGGTTT
T ss_pred CCCcCCCCCCEEEEEEEEEE-CCCC----EEEecCcCCCCEEEEeCCCCccHHHHHHHhcCCCCCEEEEE--EChHHcCC
Confidence 454 7999999999999997 3444 4444 368999999999999999999999999999887 45544332
Q ss_pred hhccCcccchhcccccccccceeeeecccCC
Q 002218 652 AAADDSARTFSLLSSRACCLEYHITLLRVTE 682 (952)
Q Consensus 652 Aa~~~~~~DiSlLs~d~~~LEyyI~LL~v~e 682 (952)
.... -..+|.... +.|.|.++.+..
T Consensus 98 ~~g~-----~~~Ip~~~~-l~f~v~l~~i~~ 122 (135)
T 1r9h_A 98 DAGS-----PPKIPGGAT-LIFEVELFEWSA 122 (135)
T ss_dssp TTCB-----TTTBCTTCC-EEEEEEEEEEEC
T ss_pred CCCC-----CCCcCcCCc-EEEEEEEEEeec
Confidence 2111 012444555 778888876544
No 361
>2kou_A Dicer-like protein 4; ATP-binding, endonuclease, helicase, hydrolase, nuclease, nucleotide-binding, nucleus, RNA- binding; NMR {Arabidopsis thaliana}
Probab=86.84 E-value=0.79 Score=42.43 Aligned_cols=60 Identities=25% Similarity=0.430 Sum_probs=41.1
Q ss_pred ceeEEEeeeeccccCCCCccccCCCCCceEEEeeecCCc----eeeeccccccchHHHHHHHHH---HHHcCCCCCCCCC
Q 002218 29 NAQFTVDEVQDVVQNGCPGLAIPQKGPCLYRCSLQLPEF----SVVSETFKKKKDAEQSAAEKA---LEKLGIDPSPNVP 101 (952)
Q Consensus 29 ~~~y~~~ev~~~~~~~~~~~~~~q~~~~~~~c~l~lp~~----~v~~~~~~~kkdaeq~aa~~a---l~klg~~~~~~~~ 101 (952)
+-.|+++++... + -.| |+|.||.- ++++...+.||.|.|+||-.| |.|+|-=...-.|
T Consensus 26 ~P~~~~~~~~~~-------------~-~~~-c~v~LP~~splr~i~g~~~~sk~~AK~sAAf~Ac~~L~~~G~Ldd~LlP 90 (102)
T 2kou_A 26 KPEFQFKPVDEF-------------G-GTI-CRITLPANAPISEIESSLLPSTEAAKKDACLKAVHELHNLGVLNDFLLP 90 (102)
T ss_dssp SCEEEEEECCGG-------------G-CEE-EEEECCTTCSSCCEEEEEESSHHHHHHHHHHHHHHHHHHHCSCTTTSCC
T ss_pred cceEEEeEeecC-------------C-CeE-EEEECCCCCCCCeeeCCccccHHHHHHHHHHHHHHHHHHCCCCccccCC
Confidence 357887776431 2 267 99999993 455577899999999999877 5556753333345
Q ss_pred Ch
Q 002218 102 SA 103 (952)
Q Consensus 102 ~~ 103 (952)
+.
T Consensus 91 ~~ 92 (102)
T 2kou_A 91 DS 92 (102)
T ss_dssp HH
T ss_pred CC
Confidence 33
No 362
>3rv0_A K. polysporus DCR1; RNAse III enzyme, RNA binding protein; 2.29A {Vanderwaltozyma polyspora}
Probab=86.76 E-value=0.13 Score=56.95 Aligned_cols=41 Identities=22% Similarity=0.280 Sum_probs=0.0
Q ss_pred CCCceEEEeeecCCceeeeccccccchHHHHHHHHHHHHcCCC
Q 002218 53 KGPCLYRCSLQLPEFSVVSETFKKKKDAEQSAAEKALEKLGID 95 (952)
Q Consensus 53 ~~~~~~~c~l~lp~~~v~~~~~~~kkdaeq~aa~~al~klg~~ 95 (952)
.|| |.+.+.+.+-.+-+|.=+-||+|||.||+.||++|+.-
T Consensus 281 ~Gp--F~v~v~i~~~~~g~G~G~SKK~AEq~AA~~AL~~L~~~ 321 (341)
T 3rv0_A 281 MPP--FRVEVKIGDILLDEAEGNSIREAEHRAAMKVLENDELL 321 (341)
T ss_dssp -------------------------------------------
T ss_pred cCC--EEEEEEECCEEEEEEEeCCHHHHHHHHHHHHHHHhhhh
Confidence 356 77777777766666888999999999999999999863
No 363
>2c7p_A Modification methylase HHAI; DNA methyltransferase, methyltransferase, base flipping, restriction system, transferase; HET: 5CM A1P SAH EPE CIT; 1.7A {Haemophilus haemolyticus} SCOP: c.66.1.26 PDB: 10mh_A* 1m0e_A* 1mht_A* 1hmy_A* 1skm_A* 2c7o_A* 2c7q_A* 2hmy_B* 2hr1_A* 3eeo_A* 3mht_A* 4mht_A* 5mht_A* 6mht_A* 7mht_A* 8mht_A* 9mht_A* 2zcj_A* 2z6u_A* 2z6q_A* ...
Probab=86.66 E-value=1.2 Score=48.41 Aligned_cols=67 Identities=15% Similarity=0.131 Sum_probs=51.2
Q ss_pred CCEEEEEcCccchHHHHHhcCCCCCceEEEEeCChHHHHHHHHHHhhhhhcccccCCCCCCCccEEEEEcCccccCCC-C
Q 002218 714 ATTLVDFGCGSGSLLDSLLDYPTALEKIVGVDISQKSLSRAAKIIHSKLSKKLDAAVPCTDVKSAVLFDGSITVFDSR-L 792 (952)
Q Consensus 714 ~krVLDIGCGeG~ll~~LAr~g~~~~qVVGVDISeemLe~ArkrLsa~la~~~~~l~Pr~~~~nVtf~qGDa~dLpf~-d 792 (952)
..+++|+.||.|.+...+.+.| ...+.++|+++.+++..+.+... . . ++|+.++... .
T Consensus 11 ~~~~~dLFaG~Gg~~~g~~~aG--~~~v~~~e~d~~a~~t~~~N~~~--------------~--~---~~Di~~~~~~~~ 69 (327)
T 2c7p_A 11 GLRFIDLFAGLGGFRLALESCG--AECVYSNEWDKYAQEVYEMNFGE--------------K--P---EGDITQVNEKTI 69 (327)
T ss_dssp TCEEEEETCTTTHHHHHHHHTT--CEEEEEECCCHHHHHHHHHHHSC--------------C--C---BSCGGGSCGGGS
T ss_pred CCcEEEECCCcCHHHHHHHHCC--CeEEEEEeCCHHHHHHHHHHcCC--------------C--C---cCCHHHcCHhhC
Confidence 4689999999999999998887 36788999999999888766421 0 1 5788776542 3
Q ss_pred CCccEEEEc
Q 002218 793 HGFDIGTCL 801 (952)
Q Consensus 793 ~sFDVVVci 801 (952)
..+|+|+..
T Consensus 70 ~~~D~l~~g 78 (327)
T 2c7p_A 70 PDHDILCAG 78 (327)
T ss_dssp CCCSEEEEE
T ss_pred CCCCEEEEC
Confidence 468999874
No 364
>1hxv_A Trigger factor; FKBP fold, ppiase, chaperone; NMR {Mycoplasma genitalium} SCOP: d.26.1.1
Probab=86.50 E-value=1 Score=41.94 Aligned_cols=61 Identities=21% Similarity=0.388 Sum_probs=51.3
Q ss_pred cCCCCceeEEEEEEEEeecccchhhhhcc--ccceEEEeccCccchhhhhhhhhccccccceecccCCc
Q 002218 580 YPSNGCLSFISYSVSLVIEGETMKELLES--REEFEFEMGTGAVIPQVEVVTAQMSVGQSACFCKELPP 646 (952)
Q Consensus 580 ~p~~gs~~~i~y~~~l~~~~~~~~~~~e~--~~~~~fe~g~~a~~~~l~~v~~q~sv~q~~~~~~~l~~ 646 (952)
-|..|..+.|.|...+ +|+ .+++ ...|+|.+|.|.+++-++..+..|.+|....+.-..|+
T Consensus 29 ~~~~gD~V~v~Y~g~~--dG~----~fdss~~~p~~f~lG~g~vi~G~ee~L~Gmk~Ge~~~v~i~fP~ 91 (113)
T 1hxv_A 29 KLANGDIAIIDFTGIV--DNK----KLASASAQNYELTIGSNSFIKGFETGLIAMKVNQKKTLALTFPS 91 (113)
T ss_dssp CCCSSEEEEEEEEEEE--TTE----ECSTTCCSEEEEEETSSCSCTTHHHHHHTSCSSEEEEECCCCCT
T ss_pred CCCCCCEEEEEEEEEE--CCE----EcccCCccCEEEEECCCChhHHHHHHHCCCCCCCEEEEEEeCch
Confidence 3789999999999997 665 3444 36899999999999999999999999999998854343
No 365
>3r24_A NSP16, 2'-O-methyl transferase; methyltransferase, zinc-finger, transferase, viral protein; HET: SAM; 2.00A {Sars coronavirus}
Probab=86.27 E-value=1.7 Score=47.74 Aligned_cols=119 Identities=12% Similarity=0.154 Sum_probs=67.5
Q ss_pred hHHHHHHHHHHHhhc-----CCCCEEEEEcC------ccchHHHHHhcCCCCCceEEEEeCChHHHHHHHHHHhhhhhcc
Q 002218 697 LSKQRVEYALQHIKE-----SCATTLVDFGC------GSGSLLDSLLDYPTALEKIVGVDISQKSLSRAAKIIHSKLSKK 765 (952)
Q Consensus 697 L~~QR~efVldlL~~-----~k~krVLDIGC------GeG~ll~~LAr~g~~~~qVVGVDISeemLe~ArkrLsa~la~~ 765 (952)
..-..|.-+.+.+.. ..+.+|||+|+ ..|... +.+.++....|+++|+.+-.
T Consensus 88 ~nv~kytqlcqyl~~~~~~vp~gmrVLDLGA~s~kg~APGS~V--Lr~~~p~g~~VVavDL~~~~--------------- 150 (344)
T 3r24_A 88 MNVAKYTQLCQYLNTLTLAVPYNMRVIHFGAGSDKGVAPGTAV--LRQWLPTGTLLVDSDLNDFV--------------- 150 (344)
T ss_dssp HHHHHHHHHHHHHTTSCCCCCTTCEEEEESCCCTTSBCHHHHH--HHHHSCTTCEEEEEESSCCB---------------
T ss_pred eeHHHHHHHHHHhccccEeecCCCEEEeCCCCCCCCCCCcHHH--HHHhCCCCcEEEEeeCcccc---------------
Confidence 344455555555533 46789999996 667743 23233211599999986521
Q ss_pred cccCCCCCCCccEEEEEcCccccCCCCCCccEEEEccc---cccCCh------hHHHHHHHHHHHccCCC-EEEEEecCC
Q 002218 766 LDAAVPCTDVKSAVLFDGSITVFDSRLHGFDIGTCLEV---IEHMEE------DEASQFGNIVLSSFRPR-ILIVSTPNY 835 (952)
Q Consensus 766 ~~~l~Pr~~~~nVtf~qGDa~dLpf~d~sFDVVVcieV---IEHL~d------D~l~~L~eeI~RvLKPG-~LIISTPN~ 835 (952)
.... .+++||...... ...||+|++-.. --|... .-.....+-+.+.|+|| .+++=+-..
T Consensus 151 --------sda~-~~IqGD~~~~~~-~~k~DLVISDMAPNtTG~~D~d~~Rs~~L~ElALdfA~~~LkpGGsFvVKVFQG 220 (344)
T 3r24_A 151 --------SDAD-STLIGDCATVHT-ANKWDLIISDMYDPRTKHVTKENDSKEGFFTYLCGFIKQKLALGGSIAVKITEH 220 (344)
T ss_dssp --------CSSS-EEEESCGGGEEE-SSCEEEEEECCCCTTSCSSCSCCCCCCTHHHHHHHHHHHHEEEEEEEEEEECSS
T ss_pred --------cCCC-eEEEcccccccc-CCCCCEEEecCCCCcCCccccchhHHHHHHHHHHHHHHHhCcCCCEEEEEEecC
Confidence 0112 448999766443 478999998221 111111 12234445567899998 666655544
Q ss_pred chhHHHH
Q 002218 836 EYNAILQ 842 (952)
Q Consensus 836 efN~lf~ 842 (952)
+....+.
T Consensus 221 sg~~~L~ 227 (344)
T 3r24_A 221 SWNADLY 227 (344)
T ss_dssp SCCHHHH
T ss_pred CCHHHHH
Confidence 4444443
No 366
>2yt4_A Protein DGCR8; DSRBD, RNA binding domain, RNA binding protein; 2.60A {Homo sapiens}
Probab=86.25 E-value=0.44 Score=49.83 Aligned_cols=34 Identities=26% Similarity=0.182 Sum_probs=28.8
Q ss_pred eEEEeeecCCceeeeccccccchHHHHHHHHHHHHcC
Q 002218 57 LYRCSLQLPEFSVVSETFKKKKDAEQSAAEKALEKLG 93 (952)
Q Consensus 57 ~~~c~l~lp~~~v~~~~~~~kkdaeq~aa~~al~klg 93 (952)
.|.|.+. -.+..|+-+-||+|||.||+.||++|.
T Consensus 164 ~F~~~v~---~~~~~G~G~sKK~Aeq~AA~~aL~~L~ 197 (232)
T 2yt4_A 164 EYVMACG---KHTVRGWCKNKRVGKQLASQKILQLLH 197 (232)
T ss_dssp EEEEEET---TEEEEEEESSHHHHHHHHHHHHHHHHS
T ss_pred EEEEEEE---EEEEEEEeCCHHHHHHHHHHHHHHHHH
Confidence 6777776 345568899999999999999999996
No 367
>3fwz_A Inner membrane protein YBAL; TRKA-N domain, E.coli, structural genomics, PSI-2, Pro structure initiative; HET: MSE AMP; 1.79A {Escherichia coli k-12}
Probab=86.12 E-value=3.1 Score=38.81 Aligned_cols=101 Identities=14% Similarity=0.033 Sum_probs=62.9
Q ss_pred CEEEEEcCcc-ch-HHHHHhcCCCCCceEEEEeCChHHHHHHHHHHhhhhhcccccCCCCCCCccEEEEEcCccccCC--
Q 002218 715 TTLVDFGCGS-GS-LLDSLLDYPTALEKIVGVDISQKSLSRAAKIIHSKLSKKLDAAVPCTDVKSAVLFDGSITVFDS-- 790 (952)
Q Consensus 715 krVLDIGCGe-G~-ll~~LAr~g~~~~qVVGVDISeemLe~ArkrLsa~la~~~~~l~Pr~~~~nVtf~qGDa~dLpf-- 790 (952)
.+|+=+|||. |. ++..|.+.+ .+|+++|.+++.++.+++. .+.++.||..+...
T Consensus 8 ~~viIiG~G~~G~~la~~L~~~g---~~v~vid~~~~~~~~~~~~-------------------g~~~i~gd~~~~~~l~ 65 (140)
T 3fwz_A 8 NHALLVGYGRVGSLLGEKLLASD---IPLVVIETSRTRVDELRER-------------------GVRAVLGNAANEEIMQ 65 (140)
T ss_dssp SCEEEECCSHHHHHHHHHHHHTT---CCEEEEESCHHHHHHHHHT-------------------TCEEEESCTTSHHHHH
T ss_pred CCEEEECcCHHHHHHHHHHHHCC---CCEEEEECCHHHHHHHHHc-------------------CCCEEECCCCCHHHHH
Confidence 5789999985 43 334555666 7999999999988777531 45678888866432
Q ss_pred --CCCCccEEEEccccccCChhHHHHHHHHHHHccCCC-EEEEEecCCchhHHHH
Q 002218 791 --RLHGFDIGTCLEVIEHMEEDEASQFGNIVLSSFRPR-ILIVSTPNYEYNAILQ 842 (952)
Q Consensus 791 --~d~sFDVVVcieVIEHL~dD~l~~L~eeI~RvLKPG-~LIISTPN~efN~lf~ 842 (952)
....+|+|+..- +++....+.-...+.+.|+ .++.-..+.++...+.
T Consensus 66 ~a~i~~ad~vi~~~-----~~~~~n~~~~~~a~~~~~~~~iiar~~~~~~~~~l~ 115 (140)
T 3fwz_A 66 LAHLECAKWLILTI-----PNGYEAGEIVASARAKNPDIEIIARAHYDDEVAYIT 115 (140)
T ss_dssp HTTGGGCSEEEECC-----SCHHHHHHHHHHHHHHCSSSEEEEEESSHHHHHHHH
T ss_pred hcCcccCCEEEEEC-----CChHHHHHHHHHHHHHCCCCeEEEEECCHHHHHHHH
Confidence 234688887642 2233233223456777788 6555555544444444
No 368
>2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana}
Probab=85.12 E-value=0.83 Score=48.64 Aligned_cols=102 Identities=16% Similarity=0.205 Sum_probs=69.1
Q ss_pred CCccCCCCceeEEEEEEEEeecccchhhhhccccceEEEeccC-ccchhhhhhhhhccccccceecccCCchhhhhhhcc
Q 002218 577 SGIYPSNGCLSFISYSVSLVIEGETMKELLESREEFEFEMGTG-AVIPQVEVVTAQMSVGQSACFCKELPPQELILAAAD 655 (952)
Q Consensus 577 ~~~~p~~gs~~~i~y~~~l~~~~~~~~~~~e~~~~~~fe~g~~-a~~~~l~~v~~q~sv~q~~~~~~~l~~~~l~lAa~~ 655 (952)
.|-.|..|+.|.|.|+..+..+|+.-.--......|+|.+|.| .+++-++..+..|.+|..+.|. +||..-+-....
T Consensus 60 ~g~~~~~gd~v~v~y~g~~~~~g~~fd~~~~~~~~~~~~lg~~~~~i~g~e~~l~~m~~Ge~~~~~--i~~~~~yg~~~~ 137 (338)
T 2if4_A 60 HGSKPSKYSTCFLHYRAWTKNSQHKFEDTWHEQQPIELVLGKEKKELAGLAIGVASMKSGERALVH--VGWELAYGKEGN 137 (338)
T ss_dssp BSCCCCTTCEEEEEEEEEETTTCCCCEEHHHHTCCEEEETTSCCGGGHHHHHHHHHCCBTCEEEEE--ECGGGSSCSSCC
T ss_pred CCCCCCCCCEEEEEEEEEEcCCCcEeecccCCCCCeEEEcCCCCcccHHHHHHHhcCCCCCeEEEE--ECHHHhcCCCCC
Confidence 5678999999999999998765642111112346899999999 8999999999999999988876 555432221111
Q ss_pred CcccchhcccccccccceeeeecccCCCh
Q 002218 656 DSARTFSLLSSRACCLEYHITLLRVTEPP 684 (952)
Q Consensus 656 ~~~~DiSlLs~d~~~LEyyI~LL~v~ep~ 684 (952)
. ....+|.... +.|.+.++.+..+.
T Consensus 138 ~---~~~~ip~~~~-l~f~v~L~~~~~~~ 162 (338)
T 2if4_A 138 F---SFPNVPPMAD-LLYEVEVIGFDETK 162 (338)
T ss_dssp C---SSSCCCTTCC-EEEEEEEEEEECCC
T ss_pred C---CCCCCCCCCc-EEEEEEEEEecCCc
Confidence 0 0112344444 77788887655543
No 369
>3pr9_A FKBP-type peptidyl-prolyl CIS-trans isomerase; FKBP protein, chaperone; 1.95A {Methanocaldococcus jannaschii} SCOP: d.26.1.0 PDB: 3pra_A
Probab=84.26 E-value=1 Score=44.63 Aligned_cols=59 Identities=27% Similarity=0.530 Sum_probs=49.0
Q ss_pred CCCceeEEEEEEEEeecccchhhhhccc-----------------cceEEEeccCccchhhhhhhhhccccccceecccC
Q 002218 582 SNGCLSFISYSVSLVIEGETMKELLESR-----------------EEFEFEMGTGAVIPQVEVVTAQMSVGQSACFCKEL 644 (952)
Q Consensus 582 ~~gs~~~i~y~~~l~~~~~~~~~~~e~~-----------------~~~~fe~g~~a~~~~l~~v~~q~sv~q~~~~~~~l 644 (952)
..|+.+.|.|+..| +|+ +++|. ..++|.+|.|.+++-++..+..|.+|..+.+. +
T Consensus 3 ~~Gd~V~v~Y~g~l--dG~----vfDss~~~~a~~~g~~~~~~~~~P~~f~vG~g~vi~G~eeaL~gm~~Ge~~~v~--I 74 (157)
T 3pr9_A 3 EKGKMVKISYDGYV--DGK----LFDTTNEELAKKEGIYNPAMIYGPVAIFAGEGQVLPGLDEAILEMDVGEEREVV--L 74 (157)
T ss_dssp CTTCEEEEEEEEEE--TTE----EEEESCHHHHHHHTCCCTTSCCSCEEEETTSSSSCHHHHHHHHHCCTTCEEEEE--E
T ss_pred CCCCEEEEEEEEEE--CCE----EEEeccccccccccccccccCCCCEEEEECCCcHHHHHHHHHcCCCCCCEEEEE--E
Confidence 57999999999999 664 34432 46999999999999999999999999998877 5
Q ss_pred Cchh
Q 002218 645 PPQE 648 (952)
Q Consensus 645 ~~~~ 648 (952)
||..
T Consensus 75 pp~~ 78 (157)
T 3pr9_A 75 PPEK 78 (157)
T ss_dssp CGGG
T ss_pred CcHH
Confidence 4443
No 370
>1u79_A FKBP-type peptidyl-prolyl CIS-trans isomerase 3; TFKBP13, FK-506 binding protein; 1.85A {Arabidopsis thaliana} SCOP: d.26.1.1 PDB: 1y0o_A
Probab=83.39 E-value=1.5 Score=41.28 Aligned_cols=65 Identities=25% Similarity=0.366 Sum_probs=52.0
Q ss_pred CCccCCCCceeEEEEEEEEeecccchhhhhcc----ccceEEEeccCccchhhhhhhhh------ccccccceecccCCc
Q 002218 577 SGIYPSNGCLSFISYSVSLVIEGETMKELLES----REEFEFEMGTGAVIPQVEVVTAQ------MSVGQSACFCKELPP 646 (952)
Q Consensus 577 ~~~~p~~gs~~~i~y~~~l~~~~~~~~~~~e~----~~~~~fe~g~~a~~~~l~~v~~q------~sv~q~~~~~~~l~~ 646 (952)
.|--|..|..+.|.|...+. +|+ .+++ ...|+|.+|.+.+++-++..+.. |.+|..+.+. +||
T Consensus 23 ~G~~~~~gd~V~v~Y~g~~~-dG~----~fdss~~~~~p~~f~lG~~~~i~G~~~~L~G~~~~~~m~~Ge~~~v~--ip~ 95 (129)
T 1u79_A 23 YGPEAVKGQLIKAHYVGKLE-NGK----VFDSSYNRGKPLTFRIGVGEVIKGWDQGILGSDGIPPMLTGGKRTLR--IPP 95 (129)
T ss_dssp SSCBCCTTCEEEEEEEEECT-TSC----EEEEHHHHTSCEEEETTSSSSCHHHHHHHHCBTTBCCCBTTCEEEEE--ECG
T ss_pred CCCCCCCCCEEEEEEEEEEC-CCC----EEEecCCCCCCEEEEeCCCCccHHHHHHhcccccccccCCCCEEEEE--ECh
Confidence 56779999999999999873 444 3443 36799999999999999988765 9999999886 555
Q ss_pred hh
Q 002218 647 QE 648 (952)
Q Consensus 647 ~~ 648 (952)
..
T Consensus 96 ~~ 97 (129)
T 1u79_A 96 EL 97 (129)
T ss_dssp GG
T ss_pred HH
Confidence 44
No 371
>3ius_A Uncharacterized conserved protein; APC63810, silicibacter pomeroyi DSS, structural genomics, PSI-2, protein structure initiative; HET: MSE; 1.66A {Ruegeria pomeroyi dss-3}
Probab=83.34 E-value=10 Score=38.47 Aligned_cols=93 Identities=16% Similarity=0.099 Sum_probs=60.4
Q ss_pred CEEEEEcCccchHHHHH----hcCCCCCceEEEEeCChHHHHHHHHHHhhhhhcccccCCCCCCCccEEEEEcCccccCC
Q 002218 715 TTLVDFGCGSGSLLDSL----LDYPTALEKIVGVDISQKSLSRAAKIIHSKLSKKLDAAVPCTDVKSAVLFDGSITVFDS 790 (952)
Q Consensus 715 krVLDIGCGeG~ll~~L----Ar~g~~~~qVVGVDISeemLe~ArkrLsa~la~~~~~l~Pr~~~~nVtf~qGDa~dLpf 790 (952)
++||=.|+ |.++..+ .+.+ .+|++++-++...+.... ..++++.+|+.++.
T Consensus 6 ~~ilVtGa--G~iG~~l~~~L~~~g---~~V~~~~r~~~~~~~~~~-------------------~~~~~~~~D~~d~~- 60 (286)
T 3ius_A 6 GTLLSFGH--GYTARVLSRALAPQG---WRIIGTSRNPDQMEAIRA-------------------SGAEPLLWPGEEPS- 60 (286)
T ss_dssp CEEEEETC--CHHHHHHHHHHGGGT---CEEEEEESCGGGHHHHHH-------------------TTEEEEESSSSCCC-
T ss_pred CcEEEECC--cHHHHHHHHHHHHCC---CEEEEEEcChhhhhhHhh-------------------CCCeEEEecccccc-
Confidence 68999995 7766544 4555 799999988765433321 26899999999876
Q ss_pred CCCCccEEEEccccccCChhHHHHHHHHHHHc-cCCC-EEEEEec
Q 002218 791 RLHGFDIGTCLEVIEHMEEDEASQFGNIVLSS-FRPR-ILIVSTP 833 (952)
Q Consensus 791 ~d~sFDVVVcieVIEHL~dD~l~~L~eeI~Rv-LKPG-~LIISTP 833 (952)
..++|+|+..-............+.+.+.+. -+.+ ++++++.
T Consensus 61 -~~~~d~vi~~a~~~~~~~~~~~~l~~a~~~~~~~~~~~v~~Ss~ 104 (286)
T 3ius_A 61 -LDGVTHLLISTAPDSGGDPVLAALGDQIAARAAQFRWVGYLSTT 104 (286)
T ss_dssp -CTTCCEEEECCCCBTTBCHHHHHHHHHHHHTGGGCSEEEEEEEG
T ss_pred -cCCCCEEEECCCccccccHHHHHHHHHHHhhcCCceEEEEeecc
Confidence 6789999987665444433344555434432 2334 5566664
No 372
>3qv2_A 5-cytosine DNA methyltransferase; DNMT2, ehmeth; HET: SAH; 2.15A {Entamoeba histolytica}
Probab=82.69 E-value=1.9 Score=47.03 Aligned_cols=70 Identities=11% Similarity=0.094 Sum_probs=51.0
Q ss_pred CCEEEEEcCccchHHHHHhcCCCCCceE-EEEeCChHHHHHHHHHHhhhhhcccccCCCCCCCccEEEEEcCccccCCC-
Q 002218 714 ATTLVDFGCGSGSLLDSLLDYPTALEKI-VGVDISQKSLSRAAKIIHSKLSKKLDAAVPCTDVKSAVLFDGSITVFDSR- 791 (952)
Q Consensus 714 ~krVLDIGCGeG~ll~~LAr~g~~~~qV-VGVDISeemLe~ArkrLsa~la~~~~~l~Pr~~~~nVtf~qGDa~dLpf~- 791 (952)
..+++|+-||.|.+...+.+.|-....| .++|+++.+++..+.+.. .. ++++|+.+++..
T Consensus 10 ~~~vidLFaG~GG~~~G~~~aG~~~~~v~~a~e~d~~a~~ty~~N~~-----------------~~-~~~~DI~~~~~~~ 71 (327)
T 3qv2_A 10 QVNVIEFFSGIGGLRSSYERSSININATFIPFDINEIANKIYSKNFK-----------------EE-VQVKNLDSISIKQ 71 (327)
T ss_dssp CEEEEEETCTTTHHHHHHHHSSCCCCEEEEEECCCHHHHHHHHHHHC-----------------CC-CBCCCTTTCCHHH
T ss_pred CCEEEEECCChhHHHHHHHHcCCCceEEEEEEECCHHHHHHHHHHCC-----------------CC-cccCChhhcCHHH
Confidence 4589999999999999998876112456 799999999988876642 11 456788776542
Q ss_pred --CCCccEEEEc
Q 002218 792 --LHGFDIGTCL 801 (952)
Q Consensus 792 --d~sFDVVVci 801 (952)
...+|+++..
T Consensus 72 i~~~~~Dil~gg 83 (327)
T 3qv2_A 72 IESLNCNTWFMS 83 (327)
T ss_dssp HHHTCCCEEEEC
T ss_pred hccCCCCEEEec
Confidence 2368999864
No 373
>2py6_A Methyltransferase FKBM; YP_546752.1, structural genomics, JO center for structural genomics, JCSG, protein structure INI PSI-2; 2.15A {Methylobacillus flagellatus KT} SCOP: c.66.1.56
Probab=81.52 E-value=1.6 Score=48.79 Aligned_cols=48 Identities=19% Similarity=0.306 Sum_probs=39.9
Q ss_pred CCCCEEEEEcCccchHHHHHh-cCCCCCceEEEEeCChHHHHHHHHHHh
Q 002218 712 SCATTLVDFGCGSGSLLDSLL-DYPTALEKIVGVDISQKSLSRAAKIIH 759 (952)
Q Consensus 712 ~k~krVLDIGCGeG~ll~~LA-r~g~~~~qVVGVDISeemLe~ArkrLs 759 (952)
.++..++|+|++.|.++..++ +.+++..+|+++|+++...+..++++.
T Consensus 225 ~~~~~viDvGAn~G~~s~~~a~~~~~~~~~V~afEP~p~~~~~L~~n~~ 273 (409)
T 2py6_A 225 SDSEKMVDCGASIGESLAGLIGVTKGKFERVWMIEPDRINLQTLQNVLR 273 (409)
T ss_dssp CSSCEEEEETCTTSHHHHHHHHHHTSCCSEEEEECCCHHHHHHHHHHHH
T ss_pred CCCCEEEECCCCcCHHHHHHHHHhcCCCCEEEEEcCCHHHHHHHHHHHH
Confidence 467899999999999999887 444233799999999999999888765
No 374
>3llv_A Exopolyphosphatase-related protein; NAD(P)-binding, rossmann, PSI, M structural genomics; 1.70A {Archaeoglobus fulgidus}
Probab=81.42 E-value=9 Score=35.23 Aligned_cols=102 Identities=17% Similarity=0.069 Sum_probs=60.7
Q ss_pred CCEEEEEcCcc-ch-HHHHHhcCCCCCceEEEEeCChHHHHHHHHHHhhhhhcccccCCCCCCCccEEEEEcCccccCC-
Q 002218 714 ATTLVDFGCGS-GS-LLDSLLDYPTALEKIVGVDISQKSLSRAAKIIHSKLSKKLDAAVPCTDVKSAVLFDGSITVFDS- 790 (952)
Q Consensus 714 ~krVLDIGCGe-G~-ll~~LAr~g~~~~qVVGVDISeemLe~ArkrLsa~la~~~~~l~Pr~~~~nVtf~qGDa~dLpf- 790 (952)
.++|+=+|||. |. ++..|.+.+ .+|+++|.+++.++.+++. .+.++.+|..+...
T Consensus 6 ~~~v~I~G~G~iG~~la~~L~~~g---~~V~~id~~~~~~~~~~~~-------------------~~~~~~gd~~~~~~l 63 (141)
T 3llv_A 6 RYEYIVIGSEAAGVGLVRELTAAG---KKVLAVDKSKEKIELLEDE-------------------GFDAVIADPTDESFY 63 (141)
T ss_dssp CCSEEEECCSHHHHHHHHHHHHTT---CCEEEEESCHHHHHHHHHT-------------------TCEEEECCTTCHHHH
T ss_pred CCEEEEECCCHHHHHHHHHHHHCC---CeEEEEECCHHHHHHHHHC-------------------CCcEEECCCCCHHHH
Confidence 45799999974 22 334555666 7999999999887766431 35677888876432
Q ss_pred ---CCCCccEEEEccccccCChhHHHHHHHHHHHccCCCEEEEEecCCchhHHHH
Q 002218 791 ---RLHGFDIGTCLEVIEHMEEDEASQFGNIVLSSFRPRILIVSTPNYEYNAILQ 842 (952)
Q Consensus 791 ---~d~sFDVVVcieVIEHL~dD~l~~L~eeI~RvLKPG~LIISTPN~efN~lf~ 842 (952)
....+|+|+..-- ++....+.-...+-+....++....+.++...+.
T Consensus 64 ~~~~~~~~d~vi~~~~-----~~~~n~~~~~~a~~~~~~~iia~~~~~~~~~~l~ 113 (141)
T 3llv_A 64 RSLDLEGVSAVLITGS-----DDEFNLKILKALRSVSDVYAIVRVSSPKKKEEFE 113 (141)
T ss_dssp HHSCCTTCSEEEECCS-----CHHHHHHHHHHHHHHCCCCEEEEESCGGGHHHHH
T ss_pred HhCCcccCCEEEEecC-----CHHHHHHHHHHHHHhCCceEEEEEcChhHHHHHH
Confidence 2357898876322 2333333333455555335555555555444444
No 375
>1q1c_A FK506-binding protein 4; rotamase, TPR repeat, nuclear protein, phosphorylation, isomerase; 1.90A {Homo sapiens} SCOP: d.26.1.1 d.26.1.1 PDB: 1n1a_A 1rot_A 1rou_A
Probab=81.34 E-value=2.9 Score=44.63 Aligned_cols=93 Identities=25% Similarity=0.477 Sum_probs=66.6
Q ss_pred CCc-cCCCCceeEEEEEEEEeecccchhhhhcc----ccceEEEeccCccchhhhhhhhhccccccceecccCCchhhhh
Q 002218 577 SGI-YPSNGCLSFISYSVSLVIEGETMKELLES----REEFEFEMGTGAVIPQVEVVTAQMSVGQSACFCKELPPQELIL 651 (952)
Q Consensus 577 ~~~-~p~~gs~~~i~y~~~l~~~~~~~~~~~e~----~~~~~fe~g~~a~~~~l~~v~~q~sv~q~~~~~~~l~~~~l~l 651 (952)
.|- .|..|..|.|.|+..+ .+|+ .+++ ...|+|.+|.|.+++-++..+..|.+|..+.|. +||..-+=
T Consensus 62 ~G~~~~~~gd~V~v~Y~g~~-~dG~----~fdss~~~~~p~~f~lG~g~vi~G~e~aL~gm~~Ge~~~v~--ipp~~aYG 134 (280)
T 1q1c_A 62 TGTEMPMIGDRVFVHYTGWL-LDGT----KFDSSLDRKDKFSFDLGKGEVIKAWDIAIATMKVGEVCHIT--CKPEYAYG 134 (280)
T ss_dssp SSSCCCCTTCEEEEEEEEEE-TTSC----EEEESTTSSSCEEEETTTTSSCHHHHHHHTTCCTTCEEEEE--ECGGGTTT
T ss_pred CCCcCCCCCCEEEEEEEEEE-CCCC----EEEecccCCCCEEEEECCcChhHHHHHHHhcCCCCCEEEEE--ECcHHhCC
Confidence 344 4999999999999997 3454 4444 368999999999999999999999999999886 56654333
Q ss_pred hhccCcccchhcccccccccceeeeecccCC
Q 002218 652 AAADDSARTFSLLSSRACCLEYHITLLRVTE 682 (952)
Q Consensus 652 Aa~~~~~~DiSlLs~d~~~LEyyI~LL~v~e 682 (952)
..... ..++..+- +.|.|.++.+..
T Consensus 135 ~~g~~-----~~Ip~~~~-lvf~Vel~~i~~ 159 (280)
T 1q1c_A 135 SAGSP-----PKIPPNAT-LVFEVELFEFKG 159 (280)
T ss_dssp TTCBT-----TTBCTTCC-EEEEEEEEEEEC
T ss_pred CcCcc-----CCCCCCCc-EEEEEEeeeecc
Confidence 22110 12344444 777788776543
No 376
>3jxv_A 70 kDa peptidyl-prolyl isomerase; FKBP- binding domain five-stranded anti-parallel beta-sheet alpha-helix crossing THis sheet; 2.08A {Triticum aestivum} PDB: 3jym_A
Probab=80.91 E-value=3 Score=45.66 Aligned_cols=94 Identities=19% Similarity=0.282 Sum_probs=69.1
Q ss_pred ccCCCCceeEEEEEEEEeecccchhhhhccccceEEEeccCccchhhhhhhhhccccccceecccCCchhhhhhhccCcc
Q 002218 579 IYPSNGCLSFISYSVSLVIEGETMKELLESREEFEFEMGTGAVIPQVEVVTAQMSVGQSACFCKELPPQELILAAADDSA 658 (952)
Q Consensus 579 ~~p~~gs~~~i~y~~~l~~~~~~~~~~~e~~~~~~fe~g~~a~~~~l~~v~~q~sv~q~~~~~~~l~~~~l~lAa~~~~~ 658 (952)
..|..|..+.|.|+..|. +|. ++++...++|.+|-|.++.-++..+..|.+|..+.+. ++|+--+=.......
T Consensus 141 ~~p~~g~~V~v~y~g~l~-dgt----~~~~~~~~~f~~g~~~v~~gl~~~l~~m~~GE~~~~~--v~p~~~yg~~G~~~~ 213 (356)
T 3jxv_A 141 ENPKDPDEVFVKYEARLE-DGT----VVSKSEGVEFTVKDGHLCPALAKAVKTMKKGEKVLLA--VKPQYGFGEMGRPAA 213 (356)
T ss_dssp CCCCTTCEEEEEEEEEET-TSC----EEEEEEEEEEEGGGCSSSHHHHHHHTTCCBTCEEEEE--ECGGGTTTTTCBCCC
T ss_pred CCCCCCCEEEEEEEEEEC-CCC----EEeccCCEEEEeCCCCcchHHHHHHhhCCCCCEEEEE--EChHhhcCCCCCCcc
Confidence 689999999999999996 332 4455568999999999999999999999999998887 455533322222222
Q ss_pred cchhcccccccccceeeeeccc
Q 002218 659 RTFSLLSSRACCLEYHITLLRV 680 (952)
Q Consensus 659 ~DiSlLs~d~~~LEyyI~LL~v 680 (952)
.....+|..+. +.|.+.++..
T Consensus 214 ~~~~~ip~~~~-l~~~vel~~~ 234 (356)
T 3jxv_A 214 GEGGAVPPNAS-LVIDLELVSW 234 (356)
T ss_dssp C--CCBCTTCC-EEEEEEEEEE
T ss_pred cccccCCCCcE-EEEEEEEEEE
Confidence 22334666666 8888888765
No 377
>2vz8_A Fatty acid synthase; transferase, phosphopantetheine, multienzyme, megasynthase, fatty acid synthesis; 3.2A {Sus scrofa} PDB: 2vz9_A*
Probab=80.86 E-value=0.61 Score=63.21 Aligned_cols=103 Identities=14% Similarity=0.116 Sum_probs=49.2
Q ss_pred CCCEEEEEcCccchHHHHHhcCCC----CCceEEEEeCChHHHHHHHHHHhhhhhcccccCCCCCCCccEEEEEcCcccc
Q 002218 713 CATTLVDFGCGSGSLLDSLLDYPT----ALEKIVGVDISQKSLSRAAKIIHSKLSKKLDAAVPCTDVKSAVLFDGSITVF 788 (952)
Q Consensus 713 k~krVLDIGCGeG~ll~~LAr~g~----~~~qVVGVDISeemLe~ArkrLsa~la~~~~~l~Pr~~~~nVtf~qGDa~dL 788 (952)
+..+||+||.|+|..+..+.+.-. ...+++-.|+|+...+.|++++... .++.-.-|..+.
T Consensus 1240 ~~~~ilEigagtg~~t~~il~~l~~~~~~~~~yt~td~s~~~~~~a~~~f~~~---------------di~~~~~d~~~~ 1304 (2512)
T 2vz8_A 1240 PKMKVVEVLAGDGQLYSRIPALLNTQPVMDLDYTATDRNPQALEAAQAKLEQL---------------HVTQGQWDPANP 1304 (2512)
T ss_dssp SEEEEEEESCSSSCCTTTHHHHTTTSSSCEEEEEEECSSSSSTTTTTTTHHHH---------------TEEEECCCSSCC
T ss_pred CCceEEEECCCccHHHHHHHHhhcccCcccceEEEecCChHHHHHHHHHhhhc---------------cccccccccccc
Confidence 457999999999976544322110 1257889999998888887665321 222211122221
Q ss_pred -CCCCCCccEEEEccccccCChhHHHHHHHHHHHccCCC-EEEEEe
Q 002218 789 -DSRLHGFDIGTCLEVIEHMEEDEASQFGNIVLSSFRPR-ILIVST 832 (952)
Q Consensus 789 -pf~d~sFDVVVcieVIEHL~dD~l~~L~eeI~RvLKPG-~LIIST 832 (952)
++...+||+|++..++|-.+ +....+ .++.++|||| .+++..
T Consensus 1305 ~~~~~~~ydlvia~~vl~~t~-~~~~~l-~~~~~lL~p~G~l~~~e 1348 (2512)
T 2vz8_A 1305 APGSLGKADLLVCNCALATLG-DPAVAV-GNMAATLKEGGFLLLHT 1348 (2512)
T ss_dssp CC-----CCEEEEECC----------------------CCEEEEEE
T ss_pred ccCCCCceeEEEEcccccccc-cHHHHH-HHHHHhcCCCcEEEEEe
Confidence 22446799999999996444 333444 5799999998 655543
No 378
>2kr7_A FKBP-type peptidyl-prolyl CIS-trans isomerase SLY; protein, rotamase; NMR {Helicobacter pylori}
Probab=79.87 E-value=2.1 Score=41.75 Aligned_cols=62 Identities=26% Similarity=0.371 Sum_probs=51.1
Q ss_pred CCCCceeEEEEEEEEeecccchhhhhccc---cceEEEeccCccchhhhhhhhhccccccceecccCCchh
Q 002218 581 PSNGCLSFISYSVSLVIEGETMKELLESR---EEFEFEMGTGAVIPQVEVVTAQMSVGQSACFCKELPPQE 648 (952)
Q Consensus 581 p~~gs~~~i~y~~~l~~~~~~~~~~~e~~---~~~~fe~g~~a~~~~l~~v~~q~sv~q~~~~~~~l~~~~ 648 (952)
+..|+.+.|.|+..+..+|+ +++|. ..++|.+|.|.+.+-++..+..|.+|..+.|. +||..
T Consensus 7 i~~gd~V~v~Y~g~~~~dG~----~fdss~~~~p~~f~~G~g~vipg~e~aL~gm~~Ge~~~v~--ipp~~ 71 (151)
T 2kr7_A 7 ESIKQAALIEYEVREQGSSI----VLDSNISKEPLEFIIGTNQIIAGLEKAVLKAQIGEWEEVV--IAPEE 71 (151)
T ss_dssp TTSCCEEEEEEEEEESSCSC----EEEESTTTCCEEEETTCCCSCHHHHHHHTTCCBTCEEEEE--ECGGG
T ss_pred CCCCCEEEEEEEEEECCCCC----EEEeCCCCcCEEEEECCCCccHHHHHHHcCCCCCCEEEEE--EecHH
Confidence 47899999999999653443 45554 47999999999999999999999999998887 55554
No 379
>2kfw_A FKBP-type peptidyl-prolyl CIS-trans isomerase SLYD; protein, cobalt, copper, cytoplasm, metal- binding, nickel, rotamase, zinc; NMR {Escherichia coli}
Probab=79.82 E-value=1.7 Score=44.47 Aligned_cols=61 Identities=16% Similarity=0.330 Sum_probs=50.6
Q ss_pred CCCCceeEEEEEEEEeecccchhhhhccc---cceEEEeccCccchhhhhhhhhccccccceecccCCchh
Q 002218 581 PSNGCLSFISYSVSLVIEGETMKELLESR---EEFEFEMGTGAVIPQVEVVTAQMSVGQSACFCKELPPQE 648 (952)
Q Consensus 581 p~~gs~~~i~y~~~l~~~~~~~~~~~e~~---~~~~fe~g~~a~~~~l~~v~~q~sv~q~~~~~~~l~~~~ 648 (952)
+..|+.|.|.|++.+ .+|+ +++|. ..++|.+|.+.+++-++..+..|.+|..+.|. +||..
T Consensus 3 i~~gd~V~v~Y~g~~-~dG~----~fdss~~~~P~~f~lG~g~vipG~eeaL~Gm~vGe~~~v~--Ippe~ 66 (196)
T 2kfw_A 3 VAKDLVVSLAYQVRT-EDGV----LVDESPVSAPLDYLHGHGSLISGLETALEGHEVGDKFDVA--VGAND 66 (196)
T ss_dssp CCSSCEEEEEEEEEE-TTTE----EEEECCTTSCCEEESSSSSSCHHHHHHHSSSCTTCEEEEE--CSTTT
T ss_pred CCCCCEEEEEEEEEE-CCCC----EEEecCCCCCEEEEECCCCcchHHHHHHcCCCCCCEEEEE--eCcHH
Confidence 478999999999996 3443 55554 56999999999999999999999999998887 65554
No 380
>4f3n_A Uncharacterized ACR, COG1565 superfamily; structural genomics, niaid, national institute of allergy AN infectious diseases; 1.75A {Burkholderia thailandensis} PDB: 4g67_A*
Probab=79.63 E-value=5.1 Score=45.72 Aligned_cols=90 Identities=21% Similarity=0.314 Sum_probs=58.9
Q ss_pred HHHHHhhcCCCCEEEEEcCccchHHHHHh----cCCCCCceEEEEeCChHHHHHHHHHHhhhhhcccccCCCCCCCccEE
Q 002218 704 YALQHIKESCATTLVDFGCGSGSLLDSLL----DYPTALEKIVGVDISQKSLSRAAKIIHSKLSKKLDAAVPCTDVKSAV 779 (952)
Q Consensus 704 fVldlL~~~k~krVLDIGCGeG~ll~~LA----r~g~~~~qVVGVDISeemLe~ArkrLsa~la~~~~~l~Pr~~~~nVt 779 (952)
++.+........+|+|+|.|.|.++.-+. +.+....+++-||+|+.+.+.-++++..... ....+|.
T Consensus 128 ~~~~~~~~~g~~~ivE~GaG~GtLa~DiL~~l~~~~~~~~~y~iVE~Sp~Lr~~Q~~~L~~~~~---------~~~~~v~ 198 (432)
T 4f3n_A 128 PVAQALDASGTRRVMEFGAGTGKLAAGLLTALAALGVELDEYAIVDLSGELRARQRETLGAQAP---------GLAARVR 198 (432)
T ss_dssp HHHHHHHHHTCCEEEEESCTTSHHHHHHHHHHHHTTCCCSEEEEECTTSSSHHHHHHHHHHHST---------TTGGGEE
T ss_pred HHHHHHHhcCCCeEEEeCCCccHHHHHHHHHHHhcCCCCceEEEEEcCHHHHHHHHHHHhcccc---------ccCCCce
Confidence 34444444446799999999999886554 3221125899999999988887777653211 1123677
Q ss_pred EEEcCccccCCCCCCcc-EEEEccccccCCh
Q 002218 780 LFDGSITVFDSRLHGFD-IGTCLEVIEHMEE 809 (952)
Q Consensus 780 f~qGDa~dLpf~d~sFD-VVVcieVIEHL~d 809 (952)
+.. + +| ..|. +|+++|++.-+|-
T Consensus 199 W~~-~---lP---~~~~g~iiANE~fDAlPv 222 (432)
T 4f3n_A 199 WLD-A---LP---ERFEGVVVGNEVLDAMPV 222 (432)
T ss_dssp EES-S---CC---SCEEEEEEEESCGGGSCC
T ss_pred ecc-c---CC---ccCceEEEeehhhccCce
Confidence 753 2 33 2344 8889999988883
No 381
>4dt4_A FKBP-type 16 kDa peptidyl-prolyl CIS-trans isomer; FKBP domain, IF domain, chaperone, peptidyl-prolyl isomerase isomerase; 1.35A {Escherichia coli}
Probab=79.51 E-value=1.9 Score=43.18 Aligned_cols=61 Identities=20% Similarity=0.375 Sum_probs=50.8
Q ss_pred CCCCceeEEEEEEEEeecccchhhhhccc----cceEEEeccCccchhhhhhhhhccccccceecccCCchh
Q 002218 581 PSNGCLSFISYSVSLVIEGETMKELLESR----EEFEFEMGTGAVIPQVEVVTAQMSVGQSACFCKELPPQE 648 (952)
Q Consensus 581 p~~gs~~~i~y~~~l~~~~~~~~~~~e~~----~~~~fe~g~~a~~~~l~~v~~q~sv~q~~~~~~~l~~~~ 648 (952)
+..|+.+.|.|+..+. +|+ +++|. ..++|.+|.|.+++-++..+..|.+|..+.|. +||..
T Consensus 25 i~~gd~V~v~Y~g~l~-dG~----vfDss~~~~~P~~f~lG~g~vipG~eeaL~gm~~Ge~~~v~--Ipp~~ 89 (169)
T 4dt4_A 25 VQSNSAVLVHFTLKLD-DGT----TAESTRNNGKPALFRLGDASLSEGLEQHLLGLKVGDKTTFS--LEPDA 89 (169)
T ss_dssp CCTTCEEEEEEEEEET-TSC----EEEEHHHHTSCEEEETTSSSSCHHHHHHHTTCCTTCEEEEE--ECGGG
T ss_pred CCCCCEEEEEEEEEEC-CCC----EEEecCCCCCCEEEEECCCCccHHHHHHHcCCCCCCEEEEE--EChHH
Confidence 4788999999999884 453 56554 67999999999999999999999999998887 55544
No 382
>1x47_A DGCR8 protein; structural genomics, DSRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.50.1.1
Probab=78.94 E-value=1.7 Score=39.75 Aligned_cols=77 Identities=14% Similarity=0.110 Sum_probs=55.3
Q ss_pred ccCCCChhhHHHhhhhhcccCcceeccccCCccccccchhhhhhhhhcccccccccccCCCcccCCCceeEEEEEeeccC
Q 002218 389 NWRGSFPREMLFMFCRQHWLSEPVFSTCSNSLKESSESSRFYEKSAALESAETGKECTSGGGTAASDNVRCEVKIFSKSR 468 (952)
Q Consensus 389 ~w~g~~pr~~l~~fc~~~~l~ep~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~c~v~~~s~~~ 468 (952)
+|.+--|..+|-.+|..+.+..|.|.... ..| .. ..|.|+|.|-.+.
T Consensus 12 ~~~~kd~Kt~LqE~~Q~~~~~~P~Y~~~~----------------------------~~G--p~--~~F~~~V~v~g~~- 58 (98)
T 1x47_A 12 NPNGKSEVCILHEYMQRVLKVRPVYNFFE----------------------------CEN--PS--EPFGASVTIDGVT- 58 (98)
T ss_dssp CTTCCCHHHHHHHHHHHHTCSCCEEEEEE----------------------------CSS--SS--CCEEEEEEETTEE-
T ss_pred cCCCCCHHHHHHHHHHHcCCCCCeEEEEE----------------------------eEC--CC--CcEEEEEEECCEE-
Confidence 34566799999999999999999998750 011 11 5599999884321
Q ss_pred CcccccCchhhhhhhhhhHhhhhhHHHHHHHhhhCC
Q 002218 469 DPILECSPKEFYKKQNESIENASLKVLSWLNAYFKD 504 (952)
Q Consensus 469 ~~~~~~~~~~~~~~~~dai~~a~l~~l~~~~~~~~~ 504 (952)
+ ....-+..-+|=|+||..+|.+|..-|++
T Consensus 59 -----~-~~G~G~SKK~Aeq~AA~~AL~~L~~~~~~ 88 (98)
T 1x47_A 59 -----Y-GSGTASSKKLAKNKAARATLEILIPDFVK 88 (98)
T ss_dssp -----E-EEEEESSHHHHHHHHHHHHHHHHCSSSSC
T ss_pred -----E-EEeeeCCHHHHHHHHHHHHHHHHHhhhhh
Confidence 1 12334667799999999999999765555
No 383
>3cgm_A SLYD, peptidyl-prolyl CIS-trans isomerase; chaperone function, two domain P rotamase; 2.41A {Thermus thermophilus} PDB: 3cgn_A 3luo_A*
Probab=78.92 E-value=1.8 Score=42.68 Aligned_cols=58 Identities=22% Similarity=0.418 Sum_probs=49.9
Q ss_pred CCCceeEEEEEEEEeecccchhhhhccccceEEEeccCccchhhhhhhhhccccccceecccCCchh
Q 002218 582 SNGCLSFISYSVSLVIEGETMKELLESREEFEFEMGTGAVIPQVEVVTAQMSVGQSACFCKELPPQE 648 (952)
Q Consensus 582 ~~gs~~~i~y~~~l~~~~~~~~~~~e~~~~~~fe~g~~a~~~~l~~v~~q~sv~q~~~~~~~l~~~~ 648 (952)
..|+.+.|.|+.. .+|+ +++|.. ++|.+|.|.+++-++..+..|.+|..+.|. +||.+
T Consensus 4 ~~gd~V~v~Y~g~--~dG~----~fdss~-~~f~~G~g~vipG~e~aL~Gm~~Ge~~~v~--ipp~~ 61 (158)
T 3cgm_A 4 GQDKVVTIRYTLQ--VEGE----VLDQGE-LSYLHGHRNLIPGLEEALEGREEGEAFQAH--VPAEK 61 (158)
T ss_dssp CTTEEEEEEEEEE--ETTE----EEEEEE-EEEETTSSSSCHHHHHHHTTCBTTCEEEEE--ECGGG
T ss_pred CCCCEEEEEEEEE--ECCE----EEEeeE-EEEEECCCCcChHHHHHHcCCCCCCEEEEE--ECcHH
Confidence 6899999999998 5563 566666 999999999999999999999999998887 55554
No 384
>3prb_A FKBP-type peptidyl-prolyl CIS-trans isomerase; chaperone; 2.20A {Methanocaldococcus jannaschii} PDB: 3prd_A
Probab=78.79 E-value=2 Score=45.15 Aligned_cols=59 Identities=27% Similarity=0.530 Sum_probs=49.4
Q ss_pred CCCceeEEEEEEEEeecccchhhhhccc-----------------cceEEEeccCccchhhhhhhhhccccccceecccC
Q 002218 582 SNGCLSFISYSVSLVIEGETMKELLESR-----------------EEFEFEMGTGAVIPQVEVVTAQMSVGQSACFCKEL 644 (952)
Q Consensus 582 ~~gs~~~i~y~~~l~~~~~~~~~~~e~~-----------------~~~~fe~g~~a~~~~l~~v~~q~sv~q~~~~~~~l 644 (952)
..|+.+.|.|+..| +|+ +++|. ..++|.+|.|.+++-++..+..|.+|....+. +
T Consensus 3 ~~Gd~V~v~Y~g~l--dG~----vfDss~~~~A~e~gi~~~~~~~~P~~f~lG~g~vIpG~eeaL~Gm~vGek~~v~--I 74 (231)
T 3prb_A 3 EKGKMVKISYDGYV--DGK----LFDTTNEELAKKEGIYNPAMIYGPVAIFAGEGQVLPGLDEAILEMDVGEEREVV--L 74 (231)
T ss_dssp CTTCEEEEEEEEEE--TTE----EEEESCHHHHHHTTCCCTTSCCSCEEEETTSSSSCHHHHHHHHTCCTTCEEEEE--E
T ss_pred CCCCEEEEEEEEEE--CCE----EEEeccchhcccccccccccCCCCEEEEeCCCcHHHHHHHHHcCCCCCCEEEEE--e
Confidence 57999999999999 664 34433 45999999999999999999999999998877 5
Q ss_pred Cchh
Q 002218 645 PPQE 648 (952)
Q Consensus 645 ~~~~ 648 (952)
||..
T Consensus 75 ppe~ 78 (231)
T 3prb_A 75 PPEK 78 (231)
T ss_dssp CGGG
T ss_pred CcHH
Confidence 5544
No 385
>1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A
Probab=78.65 E-value=1.6 Score=48.48 Aligned_cols=65 Identities=28% Similarity=0.451 Sum_probs=48.7
Q ss_pred CCcc-CCCCceeEEEEEEEEeecccchhhhhcc----ccceEEEeccCccchhhhhhhhhccccccceecccCCchh
Q 002218 577 SGIY-PSNGCLSFISYSVSLVIEGETMKELLES----REEFEFEMGTGAVIPQVEVVTAQMSVGQSACFCKELPPQE 648 (952)
Q Consensus 577 ~~~~-p~~gs~~~i~y~~~l~~~~~~~~~~~e~----~~~~~fe~g~~a~~~~l~~v~~q~sv~q~~~~~~~l~~~~ 648 (952)
.|.- |..|..|.|.|+..+ .+|+ .++| ...|+|.+|.|.+++-++..+..|.+|..+.|. +||..
T Consensus 42 ~g~~~~~~gd~v~v~y~~~~-~~g~----~~dss~~~~~p~~~~~g~~~~i~g~~~~l~~m~~Ge~~~~~--i~~~~ 111 (457)
T 1kt0_A 42 NGEETPMIGDKVYVHYKGKL-SNGK----KFDSSHDRNEPFVFSLGKGQVIKAWDIGVATMKRGEICHLL--CKPEY 111 (457)
T ss_dssp ----CCCBTCEEEEEEEEEC----------CBC------CEEEETTSTTSCHHHHHHHTTCCTTCEEEEE--ECGGG
T ss_pred CCCCCCCCCCEEEEEEEEEE-CCCC----EEeccCCCCCCeEEEeCCcchhhHHHHHHhhCCCCCEEEEE--EChHH
Confidence 3544 999999999999998 4454 4544 357999999999999999999999999999887 56554
No 386
>1boo_A Protein (N-4 cytosine-specific methyltransferase PVU II); type II DNA-(cytosine N4) methyltransferase, amino methylation, selenomethionine; HET: SAH; 2.80A {Proteus vulgaris} SCOP: c.66.1.11
Probab=78.19 E-value=2.1 Score=46.17 Aligned_cols=45 Identities=13% Similarity=0.014 Sum_probs=40.6
Q ss_pred CCCCEEEEEcCccchHHHHHhcCCCCCceEEEEeCChHHHHHHHHHHh
Q 002218 712 SCATTLVDFGCGSGSLLDSLLDYPTALEKIVGVDISQKSLSRAAKIIH 759 (952)
Q Consensus 712 ~k~krVLDIGCGeG~ll~~LAr~g~~~~qVVGVDISeemLe~ArkrLs 759 (952)
.++..|||.-||+|..+....+.+ .+.+|+|+++.+++.|++|+.
T Consensus 251 ~~~~~VlDpF~GsGtt~~aa~~~g---r~~ig~e~~~~~~~~~~~r~~ 295 (323)
T 1boo_A 251 EPDDLVVDIFGGSNTTGLVAERES---RKWISFEMKPEYVAASAFRFL 295 (323)
T ss_dssp CTTCEEEETTCTTCHHHHHHHHTT---CEEEEEESCHHHHHHHHGGGS
T ss_pred CCCCEEEECCCCCCHHHHHHHHcC---CCEEEEeCCHHHHHHHHHHHH
Confidence 467899999999999999888887 799999999999999988764
No 387
>1ix5_A FKBP; ppiase, isomerase; NMR {Methanothermococcusthermolithotrophicus} SCOP: d.26.1.1
Probab=77.91 E-value=1.5 Score=42.90 Aligned_cols=61 Identities=25% Similarity=0.460 Sum_probs=49.7
Q ss_pred CCCCceeEEEEEEEEeecccchhhhhccc-----------------cceEEEeccCccchhhhhhhhhccccccceeccc
Q 002218 581 PSNGCLSFISYSVSLVIEGETMKELLESR-----------------EEFEFEMGTGAVIPQVEVVTAQMSVGQSACFCKE 643 (952)
Q Consensus 581 p~~gs~~~i~y~~~l~~~~~~~~~~~e~~-----------------~~~~fe~g~~a~~~~l~~v~~q~sv~q~~~~~~~ 643 (952)
+..|+.+.|.|+..+ .+|+ +++|. ..++|.+|.|.+++-++..+..|.+|....+.
T Consensus 2 i~~gd~V~v~Y~g~~-~dG~----~fdss~~~~a~~~g~~~~~~~~~P~~f~~G~g~vi~G~eeaL~gm~~Ge~~~v~-- 74 (151)
T 1ix5_A 2 VDKGVKIKVDYIGKL-ESGD----VFDTSIEEVAKEAGIYAPDREYEPLEFVVGEGQLIQGFEEAVLDMEVGDEKTVK-- 74 (151)
T ss_dssp CCTTCEEEECCEECC-TTSC----CCEESCHHHHHHHTCCCSSCCCCCEEEETTTTCSCHHHHHHHHTCCTTCCCEEE--
T ss_pred CCCCCEEEEEEEEEE-CCCC----EEEecchhhcccccccccccCCCCEEEEECCCChhHHHHHHHcCCCCCCEEEEE--
Confidence 468999999999997 3443 34433 46899999999999999999999999998887
Q ss_pred CCchh
Q 002218 644 LPPQE 648 (952)
Q Consensus 644 l~~~~ 648 (952)
+||..
T Consensus 75 ipp~~ 79 (151)
T 1ix5_A 75 IPAEK 79 (151)
T ss_dssp ECTTT
T ss_pred ECcHH
Confidence 55544
No 388
>2voo_A Lupus LA protein; RNA-binding protein, RNA recognition motif, systemic lupus erythematosus, phosphoprotein, RNA maturation; 1.8A {Homo sapiens} SCOP: a.4.5.46 d.58.7.1 PDB: 2von_A 2vod_A 2vop_A 1zh5_A 1yty_A 1s7a_A
Probab=77.90 E-value=1.1 Score=45.02 Aligned_cols=87 Identities=20% Similarity=0.264 Sum_probs=64.6
Q ss_pred ChHHHHHHHHHHHhhhhcccccccCCCchhhhHHhhhhcCcccccccceEEEeecccccccccccCcccccchHHHHHHH
Q 002218 102 SAEEAWDKLIASVKHLFSNEFLSSQSPLRGHFIAALRRDGDLYGSVPASVIAVCDSKLANLCKLINPKVESSHLLVLTYI 181 (952)
Q Consensus 102 ~~~e~~~~l~~~~~~~f~~e~~~~~~pl~~h~~~~~~r~g~~~g~~p~~~~~~~d~k~~~~ck~~~~~~e~~p~~~~~~~ 181 (952)
..++.-+.|+.+|.|.|||+=|..+.=|..|+... -|.||+++||.|. |+.++.+ | ..+|
T Consensus 8 ~~~~~~~~i~~q~e~yfs~~nl~~D~fl~~~~~~~-------~g~V~l~~i~sF~-r~k~l~~--------d----~~~I 67 (193)
T 2voo_A 8 KMAALEAKICHQIEYYFGDFNLPRDKFLKEQIKLD-------EGWVPLEIMIKFN-RLNRLTT--------D----FNVI 67 (193)
T ss_dssp -CHHHHHHHHHHHHHHTSTTTGGGCHHHHHHHHHT-------TTCEEHHHHTTSH-HHHHHCC--------C----HHHH
T ss_pred CcHHHHHHHHHHhheecchhhcccCHHHHHHhccc-------CCcEEeHHHhhhh-HHHHhcC--------C----HHHH
Confidence 34667888999999999999998888788777642 6899999999764 3333332 2 3778
Q ss_pred HHHhhccC-CcEEeecCceeeeecCCCC
Q 002218 182 MRAATRLS-EFVVTSEGQLSIWRKDPYP 208 (952)
Q Consensus 182 ~~a~~~~~-~~~~~s~~~~~~~~~~p~~ 208 (952)
..|.+.+. ..+.+++++..++|..+.|
T Consensus 68 ~~Al~~S~~~~lev~ed~~~vrR~~~~p 95 (193)
T 2voo_A 68 VEALSKSKAELMEISEDKTKIRRSPSKP 95 (193)
T ss_dssp HHHHHTCSSCCEEECTTSSEEEECTTSC
T ss_pred HHHHhhcccceEEEecccceEEecccCC
Confidence 88888761 3388999999999995333
No 389
>2k8i_A SLYD, peptidyl-prolyl CIS-trans isomerase; ppiase, chaperone, rotamase; NMR {Escherichia coli}
Probab=76.72 E-value=1.9 Score=43.09 Aligned_cols=61 Identities=16% Similarity=0.335 Sum_probs=50.1
Q ss_pred CCCCceeEEEEEEEEeecccchhhhhccc---cceEEEeccCccchhhhhhhhhccccccceecccCCchh
Q 002218 581 PSNGCLSFISYSVSLVIEGETMKELLESR---EEFEFEMGTGAVIPQVEVVTAQMSVGQSACFCKELPPQE 648 (952)
Q Consensus 581 p~~gs~~~i~y~~~l~~~~~~~~~~~e~~---~~~~fe~g~~a~~~~l~~v~~q~sv~q~~~~~~~l~~~~ 648 (952)
...|+.+.|.|+..+. +|+ +++|. ..++|.+|.|.+++-++..+..|.+|..+.|. +||.+
T Consensus 3 i~~gd~V~v~Y~g~~~-dG~----~fdss~~~~P~~f~lG~g~vipG~eeaL~Gm~~Ge~~~v~--ippe~ 66 (171)
T 2k8i_A 3 VAKDLVVSLAYQVRTE-DGV----LVDESPVSAPLDYLHGHGSLISGLETALEGHEVGDKFDVA--VGAND 66 (171)
T ss_dssp CCTTEEEEEEEEEEET-TSC----EEEECCSSSCEEEETTSCSSCSHHHHHHTTCCTTCEEEEE--EETTT
T ss_pred CCCCCEEEEEEEEEEC-CCC----EEeeccCCcCEEEEECCCCcchHHHHHHcCCCCCCEEEEE--ECcHH
Confidence 3689999999999964 453 56654 46999999999999999999999999998877 44443
No 390
>3c85_A Putative glutathione-regulated potassium-efflux S protein KEFB; TRKA domain; HET: AMP; 1.90A {Vibrio parahaemolyticus rimd 2210633}
Probab=75.84 E-value=12 Score=36.12 Aligned_cols=95 Identities=12% Similarity=0.082 Sum_probs=55.3
Q ss_pred CCEEEEEcCcc-chH-HHHHhcC-CCCCceEEEEeCChHHHHHHHHHHhhhhhcccccCCCCCCCccEEEEEcCccccC-
Q 002218 714 ATTLVDFGCGS-GSL-LDSLLDY-PTALEKIVGVDISQKSLSRAAKIIHSKLSKKLDAAVPCTDVKSAVLFDGSITVFD- 789 (952)
Q Consensus 714 ~krVLDIGCGe-G~l-l~~LAr~-g~~~~qVVGVDISeemLe~ArkrLsa~la~~~~~l~Pr~~~~nVtf~qGDa~dLp- 789 (952)
+.+|+=+|||. |.. +..|.+. + .+|+++|.+++.++.+++. .+..+.+|..+..
T Consensus 39 ~~~v~IiG~G~~G~~~a~~L~~~~g---~~V~vid~~~~~~~~~~~~-------------------g~~~~~gd~~~~~~ 96 (183)
T 3c85_A 39 HAQVLILGMGRIGTGAYDELRARYG---KISLGIEIREEAAQQHRSE-------------------GRNVISGDATDPDF 96 (183)
T ss_dssp TCSEEEECCSHHHHHHHHHHHHHHC---SCEEEEESCHHHHHHHHHT-------------------TCCEEECCTTCHHH
T ss_pred CCcEEEECCCHHHHHHHHHHHhccC---CeEEEEECCHHHHHHHHHC-------------------CCCEEEcCCCCHHH
Confidence 46899999874 333 3455555 6 7899999999877665431 2445667765421
Q ss_pred --C--CCCCccEEEEccccccCChhHH-HHHHHHHHHccCCC-EEEEEecCCc
Q 002218 790 --S--RLHGFDIGTCLEVIEHMEEDEA-SQFGNIVLSSFRPR-ILIVSTPNYE 836 (952)
Q Consensus 790 --f--~d~sFDVVVcieVIEHL~dD~l-~~L~eeI~RvLKPG-~LIISTPN~e 836 (952)
. ....+|+|+..- +++.. .... ...+.+.|+ .++..+-+.+
T Consensus 97 l~~~~~~~~ad~vi~~~-----~~~~~~~~~~-~~~~~~~~~~~ii~~~~~~~ 143 (183)
T 3c85_A 97 WERILDTGHVKLVLLAM-----PHHQGNQTAL-EQLQRRNYKGQIAAIAEYPD 143 (183)
T ss_dssp HHTBCSCCCCCEEEECC-----SSHHHHHHHH-HHHHHTTCCSEEEEEESSHH
T ss_pred HHhccCCCCCCEEEEeC-----CChHHHHHHH-HHHHHHCCCCEEEEEECCHH
Confidence 1 235689888632 22222 2222 356667777 5555554433
No 391
>3ubt_Y Modification methylase HAEIII; protein-DNA complex, DNA cytosine-5 methyltransferase, DNA B S-adenosyl methionine binding; HET: ATP 2PE; 2.50A {Haemophilus aegyptius} PDB: 1dct_A*
Probab=75.40 E-value=5 Score=42.59 Aligned_cols=66 Identities=18% Similarity=0.125 Sum_probs=51.1
Q ss_pred CEEEEEcCccchHHHHHhcCCCCCceEEEEeCChHHHHHHHHHHhhhhhcccccCCCCCCCccEEEEEcCccccCCC-CC
Q 002218 715 TTLVDFGCGSGSLLDSLLDYPTALEKIVGVDISQKSLSRAAKIIHSKLSKKLDAAVPCTDVKSAVLFDGSITVFDSR-LH 793 (952)
Q Consensus 715 krVLDIGCGeG~ll~~LAr~g~~~~qVVGVDISeemLe~ArkrLsa~la~~~~~l~Pr~~~~nVtf~qGDa~dLpf~-d~ 793 (952)
.+|||+=||-|.+...|.+.| ..-+.++|+++.+++.-+.+. .-.++.+|+.+++.. ..
T Consensus 1 mkvidLFsG~GG~~~G~~~aG--~~~v~a~e~d~~a~~ty~~N~------------------~~~~~~~DI~~i~~~~~~ 60 (331)
T 3ubt_Y 1 MNLISLFSGAGGLDLGFQKAG--FRIICANEYDKSIWKTYESNH------------------SAKLIKGDISKISSDEFP 60 (331)
T ss_dssp CEEEEESCTTCHHHHHHHHTT--CEEEEEEECCTTTHHHHHHHC------------------CSEEEESCGGGCCGGGSC
T ss_pred CeEEEeCcCccHHHHHHHHCC--CEEEEEEeCCHHHHHHHHHHC------------------CCCcccCChhhCCHhhCC
Confidence 379999999999999998877 356779999999888776542 125678999887653 35
Q ss_pred CccEEEE
Q 002218 794 GFDIGTC 800 (952)
Q Consensus 794 sFDVVVc 800 (952)
.+|+++.
T Consensus 61 ~~D~l~g 67 (331)
T 3ubt_Y 61 KCDGIIG 67 (331)
T ss_dssp CCSEEEC
T ss_pred cccEEEe
Confidence 6899886
No 392
>4h0n_A DNMT2; SAH binding, transferase; HET: SAH; 2.71A {Spodoptera frugiperda}
Probab=75.39 E-value=1.7 Score=47.55 Aligned_cols=69 Identities=14% Similarity=0.119 Sum_probs=50.3
Q ss_pred CEEEEEcCccchHHHHHhcCCCCCceEEEEeCChHHHHHHHHHHhhhhhcccccCCCCCCCccEEEEEcCccccCCC---
Q 002218 715 TTLVDFGCGSGSLLDSLLDYPTALEKIVGVDISQKSLSRAAKIIHSKLSKKLDAAVPCTDVKSAVLFDGSITVFDSR--- 791 (952)
Q Consensus 715 krVLDIGCGeG~ll~~LAr~g~~~~qVVGVDISeemLe~ArkrLsa~la~~~~~l~Pr~~~~nVtf~qGDa~dLpf~--- 791 (952)
.+++|+-||.|.+...+.+.|-....|.++|+++.+++.-+.+.. ...++.+|+.++...
T Consensus 4 ~~~idLFaG~GG~~~G~~~aG~~~~~v~a~e~d~~a~~ty~~N~~-----------------~~~~~~~DI~~~~~~~~~ 66 (333)
T 4h0n_A 4 HKILELYSGIGGMHCAWKESGLDGEIVAAVDINTVANSVYKHNFP-----------------ETNLLNRNIQQLTPQVIK 66 (333)
T ss_dssp EEEEEETCTTTHHHHHHHHHTCSEEEEEEECCCHHHHHHHHHHCT-----------------TSCEECCCGGGCCHHHHH
T ss_pred CEEEEECcCccHHHHHHHHcCCCceEEEEEeCCHHHHHHHHHhCC-----------------CCceeccccccCCHHHhc
Confidence 479999999999999887765112458899999998888766531 234567888776532
Q ss_pred CCCccEEEE
Q 002218 792 LHGFDIGTC 800 (952)
Q Consensus 792 d~sFDVVVc 800 (952)
...+|+++.
T Consensus 67 ~~~~D~l~g 75 (333)
T 4h0n_A 67 KWNVDTILM 75 (333)
T ss_dssp HTTCCEEEE
T ss_pred cCCCCEEEe
Confidence 236898885
No 393
>3adg_A F21M12.9 protein; HYL1, miRNA processing mechanism, RNA binding protein, gene regulation; 1.70A {Arabidopsis thaliana} PDB: 3adi_A
Probab=74.61 E-value=3 Score=35.70 Aligned_cols=69 Identities=13% Similarity=0.129 Sum_probs=48.3
Q ss_pred ChhhHHHhhhhhcccCcceeccccCCccccccchhhhhhhhhcccccccccccCCCcccCCCceeEEEEEeeccCCcccc
Q 002218 394 FPREMLFMFCRQHWLSEPVFSTCSNSLKESSESSRFYEKSAALESAETGKECTSGGGTAASDNVRCEVKIFSKSRDPILE 473 (952)
Q Consensus 394 ~pr~~l~~fc~~~~l~ep~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~c~v~~~s~~~~~~~~ 473 (952)
-|+..|-.+|..+++..|.|... .. |......|.|+|.|-.+ .
T Consensus 4 d~Kt~LqE~~q~~~~~~p~Y~~~-----------------------------~~--Gp~h~~~F~~~v~v~g~------~ 46 (73)
T 3adg_A 4 VFKSRLQEYAQKYKLPTPVYEIV-----------------------------KE--GPSHKSLFQSTVILDGV------R 46 (73)
T ss_dssp SHHHHHHHHHHHTTCCCCEEEEE-----------------------------EE--SSTTSCEEEEEEEETTE------E
T ss_pred CHHHHHHHHHHHcCCCCCEEEEE-----------------------------eE--CCCCCCeEEEEEEECCE------E
Confidence 47899999999999999999776 11 22223349999998532 1
Q ss_pred cCchhhhhhhhhhHhhhhhHHHHHHH
Q 002218 474 CSPKEFYKKQNESIENASLKVLSWLN 499 (952)
Q Consensus 474 ~~~~~~~~~~~dai~~a~l~~l~~~~ 499 (952)
+....-++...+|=|+||..+|.+|.
T Consensus 47 ~~~G~G~~sKK~Aeq~AA~~al~~L~ 72 (73)
T 3adg_A 47 YNSLPGFFNRKAAEQSAAEVALRELA 72 (73)
T ss_dssp EECCSCBSSHHHHHHHHHHHHHHHHT
T ss_pred EEeeeccCCHHHHHHHHHHHHHHHhh
Confidence 22222225667899999999998874
No 394
>2qrv_A DNA (cytosine-5)-methyltransferase 3A; DNA methyltransferase 3A (DNMT3A) and ITS regulatory factor; HET: DNA SAH; 2.89A {Homo sapiens}
Probab=74.20 E-value=3.8 Score=44.18 Aligned_cols=72 Identities=11% Similarity=0.175 Sum_probs=52.1
Q ss_pred CCCEEEEEcCccchHHHHHhcCCCCCceEEEEeCChHHHHHHHHHHhhhhhcccccCCCCCCCccEEEEEcCccccCCC-
Q 002218 713 CATTLVDFGCGSGSLLDSLLDYPTALEKIVGVDISQKSLSRAAKIIHSKLSKKLDAAVPCTDVKSAVLFDGSITVFDSR- 791 (952)
Q Consensus 713 k~krVLDIGCGeG~ll~~LAr~g~~~~qVVGVDISeemLe~ArkrLsa~la~~~~~l~Pr~~~~nVtf~qGDa~dLpf~- 791 (952)
...+++|+=||.|.+...+.+.|-....|.++|+++.+++.-+.+. +...++.+|+.++...
T Consensus 15 ~~~~vidLFaG~GG~~~g~~~aG~~~~~v~a~E~d~~a~~ty~~N~-----------------~~~~~~~~DI~~i~~~~ 77 (295)
T 2qrv_A 15 KPIRVLSLFDGIATGLLVLKDLGIQVDRYIASEVCEDSITVGMVRH-----------------QGKIMYVGDVRSVTQKH 77 (295)
T ss_dssp CCEEEEEETCTTTHHHHHHHHTTBCEEEEEEECCCHHHHHHHHHHT-----------------TTCEEEECCGGGCCHHH
T ss_pred CCCEEEEeCcCccHHHHHHHHCCCccceEEEEECCHHHHHHHHHhC-----------------CCCceeCCChHHccHHH
Confidence 4568999999999999998887721111699999999887765442 1345778899887532
Q ss_pred ---CCCccEEEEc
Q 002218 792 ---LHGFDIGTCL 801 (952)
Q Consensus 792 ---d~sFDVVVci 801 (952)
...+|+++..
T Consensus 78 i~~~~~~Dll~gg 90 (295)
T 2qrv_A 78 IQEWGPFDLVIGG 90 (295)
T ss_dssp HHHTCCCSEEEEC
T ss_pred hcccCCcCEEEec
Confidence 2469999873
No 395
>3vyw_A MNMC2; tRNA wobble uridine, modification enzyme, genetic CODE, 5- methylaminomethyl-2-thiouridine, methyltransferase; HET: SAM; 2.49A {Aquifex aeolicus} PDB: 2e58_A*
Probab=73.44 E-value=11 Score=41.23 Aligned_cols=140 Identities=11% Similarity=0.069 Sum_probs=74.2
Q ss_pred hhhhhhcCCc---hhHHHHHHHHHHH-----hhcCCCCEEEEEcCccchHHHHHh----cCC-CCCceEEEEeCCh----
Q 002218 686 DRMEQALFSP---PLSKQRVEYALQH-----IKESCATTLVDFGCGSGSLLDSLL----DYP-TALEKIVGVDISQ---- 748 (952)
Q Consensus 686 eRye~~~F~P---PL~~QR~efVldl-----L~~~k~krVLDIGCGeG~ll~~LA----r~g-~~~~qVVGVDISe---- 748 (952)
+++...+|+. .+.+.|+-|+... ......-+|||+|-|+|....... +.. ....+++.+|..+
T Consensus 61 ~~f~e~YhS~~~GAl~Es~hVFi~~~~L~~r~~~~~~~~IlE~GFGTGLNfl~t~~~~~~~~~~~~L~~iS~Ek~pl~~~ 140 (308)
T 3vyw_A 61 KTYGEPYHSQTAGAIRESLYKFVRPSRILEKAKERKVIRILDVGFGLGYNLAVALKHLWEVNPKLRVEIISFEKELLKEF 140 (308)
T ss_dssp TTTTEESSCTTTCHHHHHHHHTHHHHTHHHHHHHCSEEEEEEECCTTSHHHHHHHHHHHHHCTTCEEEEEEEESSCCSCC
T ss_pred CccCCccCCCCCcHHHHHHHHHhccCCchHHhcCCCCcEEEEeCCCccHHHHHHHHHHHHhCCCcceEEEeecHHHHHhh
Confidence 5567777764 3778888887532 122344589999999999753221 112 1113567777421
Q ss_pred ----HHHHHHHHHHhhhhhcccccCCCCCCCccEEEEEcCccccCC--CCCCccEEEEccccccCChh-HHHHHHHHHHH
Q 002218 749 ----KSLSRAAKIIHSKLSKKLDAAVPCTDVKSAVLFDGSITVFDS--RLHGFDIGTCLEVIEHMEED-EASQFGNIVLS 821 (952)
Q Consensus 749 ----emLe~ArkrLsa~la~~~~~l~Pr~~~~nVtf~qGDa~dLpf--~d~sFDVVVcieVIEHL~dD-~l~~L~eeI~R 821 (952)
+.+....+.+....... ..+...++++.||+.+.-. ....||+|+.-..=-.-.++ --..+.+.|++
T Consensus 141 ~~~~~~~~~l~~~l~~~~p~~------~~~~v~L~l~~GDa~~~l~~l~~~~~Da~flDgFsP~kNPeLWs~e~f~~l~~ 214 (308)
T 3vyw_A 141 PILPEPYREIHEFLLERVPEY------EGERLSLKVLLGDARKRIKEVENFKADAVFHDAFSPYKNPELWTLDFLSLIKE 214 (308)
T ss_dssp CCCCTTSHHHHHHHHHHCSEE------ECSSEEEEEEESCHHHHGGGCCSCCEEEEEECCSCTTTSGGGGSHHHHHHHHT
T ss_pred HhchHhHHHHHHHHHHhCccc------cCCcEEEEEEechHHHHHhhhcccceeEEEeCCCCcccCcccCCHHHHHHHHH
Confidence 11111111111110000 1122356789999976322 33479999774321111111 11345567999
Q ss_pred ccCCCEEEEE
Q 002218 822 SFRPRILIVS 831 (952)
Q Consensus 822 vLKPG~LIIS 831 (952)
+++||..+.|
T Consensus 215 ~~~pgg~laT 224 (308)
T 3vyw_A 215 RIDEKGYWVS 224 (308)
T ss_dssp TEEEEEEEEE
T ss_pred HhCCCcEEEE
Confidence 9999965554
No 396
>1eg2_A Modification methylase RSRI; rossmann fold, exocyclic amino DNA methyltransferase RSRI, D binding, DNA modification, DNA methylation; HET: MTA; 1.75A {Rhodobacter sphaeroides} SCOP: c.66.1.11 PDB: 1nw5_A* 1nw6_A* 1nw7_A* 1nw8_A
Probab=73.32 E-value=3.5 Score=44.73 Aligned_cols=52 Identities=13% Similarity=0.221 Sum_probs=42.5
Q ss_pred HHHHHhhcCCCCEEEEEcCccchHHHHHhcCCCCCceEEEEeCCh---HHHHHHHHHHh
Q 002218 704 YALQHIKESCATTLVDFGCGSGSLLDSLLDYPTALEKIVGVDISQ---KSLSRAAKIIH 759 (952)
Q Consensus 704 fVldlL~~~k~krVLDIGCGeG~ll~~LAr~g~~~~qVVGVDISe---emLe~ArkrLs 759 (952)
.+..... .++..|||.=||+|..+....+.+ .+.+|+|+++ ..++.|++|+.
T Consensus 234 ~~i~~~~-~~~~~vlDpF~GsGtt~~aa~~~~---r~~ig~e~~~~~~~~~~~~~~Rl~ 288 (319)
T 1eg2_A 234 RLVRALS-HPGSTVLDFFAGSGVTARVAIQEG---RNSICTDAAPVFKEYYQKQLTFLQ 288 (319)
T ss_dssp HHHHHHS-CTTCEEEETTCTTCHHHHHHHHHT---CEEEEEESSTHHHHHHHHHHHHC-
T ss_pred HHHHHhC-CCCCEEEecCCCCCHHHHHHHHcC---CcEEEEECCccHHHHHHHHHHHHH
Confidence 4444332 467899999999999999888877 7999999999 99999988864
No 397
>3l4b_C TRKA K+ channel protien TM1088B; potassium channel, ring-gating complex, structural GEN PSI-2-2, protein structure initiative; HET: AMP; 3.45A {Thermotoga maritima}
Probab=72.46 E-value=19 Score=35.74 Aligned_cols=102 Identities=16% Similarity=0.103 Sum_probs=62.1
Q ss_pred EEEEEcCcc-c-hHHHHHhcCCCCCceEEEEeCChHHHHHHHHHHhhhhhcccccCCCCCCCccEEEEEcCccccCC---
Q 002218 716 TLVDFGCGS-G-SLLDSLLDYPTALEKIVGVDISQKSLSRAAKIIHSKLSKKLDAAVPCTDVKSAVLFDGSITVFDS--- 790 (952)
Q Consensus 716 rVLDIGCGe-G-~ll~~LAr~g~~~~qVVGVDISeemLe~ArkrLsa~la~~~~~l~Pr~~~~nVtf~qGDa~dLpf--- 790 (952)
+|+=+|+|. | .++..|.+.+ ..|+.+|.+++.++...+. ..+.++.||+.+...
T Consensus 2 ~iiIiG~G~~G~~la~~L~~~g---~~v~vid~~~~~~~~l~~~------------------~~~~~i~gd~~~~~~l~~ 60 (218)
T 3l4b_C 2 KVIIIGGETTAYYLARSMLSRK---YGVVIINKDRELCEEFAKK------------------LKATIIHGDGSHKEILRD 60 (218)
T ss_dssp CEEEECCHHHHHHHHHHHHHTT---CCEEEEESCHHHHHHHHHH------------------SSSEEEESCTTSHHHHHH
T ss_pred EEEEECCCHHHHHHHHHHHhCC---CeEEEEECCHHHHHHHHHH------------------cCCeEEEcCCCCHHHHHh
Confidence 567778753 2 2334455566 7899999999887765332 145678898876432
Q ss_pred -CCCCccEEEEccccccCChhHHHHHHHHHHHccCCC-EEEEEecCCchhHHHHh
Q 002218 791 -RLHGFDIGTCLEVIEHMEEDEASQFGNIVLSSFRPR-ILIVSTPNYEYNAILQK 843 (952)
Q Consensus 791 -~d~sFDVVVcieVIEHL~dD~l~~L~eeI~RvLKPG-~LIISTPN~efN~lf~~ 843 (952)
....+|+|++.- +++....+...+.+.+.|. .++.-+-+.++...+..
T Consensus 61 a~i~~ad~vi~~~-----~~d~~n~~~~~~a~~~~~~~~iia~~~~~~~~~~l~~ 110 (218)
T 3l4b_C 61 AEVSKNDVVVILT-----PRDEVNLFIAQLVMKDFGVKRVVSLVNDPGNMEIFKK 110 (218)
T ss_dssp HTCCTTCEEEECC-----SCHHHHHHHHHHHHHTSCCCEEEECCCSGGGHHHHHH
T ss_pred cCcccCCEEEEec-----CCcHHHHHHHHHHHHHcCCCeEEEEEeCcchHHHHHH
Confidence 245789888742 3344444444566666666 66555555555555543
No 398
>3two_A Mannitol dehydrogenase; cinnamyl-alcohol dehydrogenase, NADP(H) oxidoreductase; HET: NDP; 2.18A {Helicobacter pylori}
Probab=71.60 E-value=7.5 Score=41.60 Aligned_cols=46 Identities=15% Similarity=0.039 Sum_probs=37.0
Q ss_pred hhcCCCCEEEEEcCcc-chHHHHHhcCCCCCceEEEEeCChHHHHHHHH
Q 002218 709 IKESCATTLVDFGCGS-GSLLDSLLDYPTALEKIVGVDISQKSLSRAAK 756 (952)
Q Consensus 709 L~~~k~krVLDIGCGe-G~ll~~LAr~g~~~~qVVGVDISeemLe~Ark 756 (952)
....++.+||-+|+|. |.++..+++..+ .+|+++|.+++-++.+++
T Consensus 172 ~~~~~g~~VlV~GaG~vG~~a~qla~~~G--a~Vi~~~~~~~~~~~~~~ 218 (348)
T 3two_A 172 SKVTKGTKVGVAGFGGLGSMAVKYAVAMG--AEVSVFARNEHKKQDALS 218 (348)
T ss_dssp TTCCTTCEEEEESCSHHHHHHHHHHHHTT--CEEEEECSSSTTHHHHHH
T ss_pred cCCCCCCEEEEECCcHHHHHHHHHHHHCC--CeEEEEeCCHHHHHHHHh
Confidence 3556788999999985 788888887543 699999999998888864
No 399
>1ekz_A DSRBDIII, maternal effect protein (staufen); structure, protein/RNA, protein DSRBD, RNA hairpin; NMR {Drosophila melanogaster} SCOP: d.50.1.1 PDB: 1stu_A
Probab=71.33 E-value=4.4 Score=34.94 Aligned_cols=68 Identities=16% Similarity=0.082 Sum_probs=47.9
Q ss_pred CChhhHHHhhhhhcccCcceeccccCCccccccchhhhhhhhhcccccccccccCCCcccCCCceeEEEEEeeccCCccc
Q 002218 393 SFPREMLFMFCRQHWLSEPVFSTCSNSLKESSESSRFYEKSAALESAETGKECTSGGGTAASDNVRCEVKIFSKSRDPIL 472 (952)
Q Consensus 393 ~~pr~~l~~fc~~~~l~ep~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~c~v~~~s~~~~~~~ 472 (952)
.-|...|-.+|..+.+. |.|.... .. |......|.|+|.|- + ++
T Consensus 7 ~d~ks~LqE~~q~~~~~-p~Y~~~~----------------------------~~--Gp~h~~~F~~~v~i~----~-~~ 50 (76)
T 1ekz_A 7 KSPISQVHEIGIKRNMT-VHFKVLR----------------------------EE--GPAHMKNFITACIVG----S-IV 50 (76)
T ss_dssp SCHHHHHHHHHHHTTCC-CEEEESS----------------------------SC--CSSSCSCSSEEEEET----T-EE
T ss_pred CCHHHHHHHHHHHcCCC-CEEEEEE----------------------------eE--CCCCCCcEEEEEEEC----C-EE
Confidence 45899999999999998 9987650 01 222233499999983 2 11
Q ss_pred ccCchhhhhhhhhhHhhhhhHHHHHHH
Q 002218 473 ECSPKEFYKKQNESIENASLKVLSWLN 499 (952)
Q Consensus 473 ~~~~~~~~~~~~dai~~a~l~~l~~~~ 499 (952)
....-+..-+|=|+||..+|..|.
T Consensus 51 ---~~G~G~sKK~Aeq~AA~~aL~~L~ 74 (76)
T 1ekz_A 51 ---TEGEGNGKKVSKKRAAEKMLVELQ 74 (76)
T ss_dssp ---EEECCCSTTSSSHHHHHHHHHHHT
T ss_pred ---EEEeeCCHHHHHHHHHHHHHHHHh
Confidence 223335667899999999998874
No 400
>3iei_A Leucine carboxyl methyltransferase 1; LCMT-1, S-adenosyl-L-methionine; HET: SAH MES; 1.90A {Homo sapiens} PDB: 3p71_T* 3mnt_A* 3o7w_A*
Probab=70.71 E-value=53 Score=35.98 Aligned_cols=131 Identities=18% Similarity=0.180 Sum_probs=78.1
Q ss_pred HHHHHHHH----hhcC-CCCEEEEEcCccchHHHHHhcCCCCCceEEEEeCChHHHHHHHHHHhhh------hhcc-c-c
Q 002218 701 RVEYALQH----IKES-CATTLVDFGCGSGSLLDSLLDYPTALEKIVGVDISQKSLSRAAKIIHSK------LSKK-L-D 767 (952)
Q Consensus 701 R~efVldl----L~~~-k~krVLDIGCGeG~ll~~LAr~g~~~~qVVGVDISeemLe~ArkrLsa~------la~~-~-~ 767 (952)
|..++-+. +... +...|+-+|||-=.....|...+.....++=||. ++.++.-++.+... +... . +
T Consensus 73 Rt~~iD~~v~~fl~~~~~~~QVV~LGaGlDTr~~RL~~~~~~~~~~~EVD~-P~vi~~K~~~l~~~~~l~~~lg~~~~~~ 151 (334)
T 3iei_A 73 RVHGVSQLIKAFLRKTECHCQIVNLGAGMDTTFWRLKDEDLLSSKYFEVDF-PMIVTRKLHSIKCKPPLSSPILELHSED 151 (334)
T ss_dssp HHHHHHHHHHHHHHHTTTCSEEEEETCTTCCHHHHHHHTTCCCSEEEEEEC-HHHHHHHHHHHHHCHHHHHHHHHHSSSS
T ss_pred HHHHHHHHHHHHHHhCCCCCEEEEeCCCcCchHHHhcCCCCCCCeEEECCc-HHHHHHHHHHHhhchhhhhhhccccccc
Confidence 44444333 3443 4679999999987777777654212367888886 55565544444321 0000 0 0
Q ss_pred cCCCC---CCCccEEEEEcCccccC----------CCCCCccEEEEccccccCChhHHHHHHHHHHHccCCCEEEEEe
Q 002218 768 AAVPC---TDVKSAVLFDGSITVFD----------SRLHGFDIGTCLEVIEHMEEDEASQFGNIVLSSFRPRILIVST 832 (952)
Q Consensus 768 ~l~Pr---~~~~nVtf~qGDa~dLp----------f~d~sFDVVVcieVIEHL~dD~l~~L~eeI~RvLKPG~LIIST 832 (952)
..... ....+..++-+|+.+.. +....--++++-.++.+|+++....+.+.+.....+|.+++-.
T Consensus 152 ~~~~~~~~l~s~~y~~v~~DL~d~~~l~~~L~~~g~d~~~Ptl~iaEGvL~YL~~~~~~~ll~~ia~~f~~~~~i~yE 229 (334)
T 3iei_A 152 TLQMDGHILDSKRYAVIGADLRDLSELEEKLKKCNMNTQLPTLLIAECVLVYMTPEQSANLLKWAANSFERAMFINYE 229 (334)
T ss_dssp SCBCCTTEEECSSEEEEECCTTCHHHHHHHHHHTTCCTTSCEEEEEESCGGGSCHHHHHHHHHHHHHHCSSEEEEEEE
T ss_pred ccccccccCCCCceEEEccccccchhHHHHHHhcCCCCCCCEEEEEchhhhCCCHHHHHHHHHHHHHhCCCceEEEEe
Confidence 00000 01346788889987632 1223344788888999999999889888888888777444433
No 401
>1id1_A Putative potassium channel protein; RCK domain, E.coli potassium channel, BK channel, rossmann fold, membrane protein; 2.40A {Escherichia coli} SCOP: c.2.1.9
Probab=70.12 E-value=35 Score=31.89 Aligned_cols=105 Identities=7% Similarity=0.074 Sum_probs=60.5
Q ss_pred CCEEEEEcCcc-ch-HHHHHhcCCCCCceEEEEeCC-hHHHHHHHHHHhhhhhcccccCCCCCCCccEEEEEcCccccCC
Q 002218 714 ATTLVDFGCGS-GS-LLDSLLDYPTALEKIVGVDIS-QKSLSRAAKIIHSKLSKKLDAAVPCTDVKSAVLFDGSITVFDS 790 (952)
Q Consensus 714 ~krVLDIGCGe-G~-ll~~LAr~g~~~~qVVGVDIS-eemLe~ArkrLsa~la~~~~~l~Pr~~~~nVtf~qGDa~dLpf 790 (952)
..+|+=+|+|. |. ++..|.+.+ .+|+.+|.+ ++.++...+... ..+.++.||..+...
T Consensus 3 ~~~vlI~G~G~vG~~la~~L~~~g---~~V~vid~~~~~~~~~~~~~~~----------------~~~~~i~gd~~~~~~ 63 (153)
T 1id1_A 3 KDHFIVCGHSILAINTILQLNQRG---QNVTVISNLPEDDIKQLEQRLG----------------DNADVIPGDSNDSSV 63 (153)
T ss_dssp CSCEEEECCSHHHHHHHHHHHHTT---CCEEEEECCCHHHHHHHHHHHC----------------TTCEEEESCTTSHHH
T ss_pred CCcEEEECCCHHHHHHHHHHHHCC---CCEEEEECCChHHHHHHHHhhc----------------CCCeEEEcCCCCHHH
Confidence 35688888752 22 224455556 789999997 454444432211 146788899876432
Q ss_pred ----CCCCccEEEEccccccCChhHHHHHHHHHHHccCCC-EEEEEecCCchhHHHH
Q 002218 791 ----RLHGFDIGTCLEVIEHMEEDEASQFGNIVLSSFRPR-ILIVSTPNYEYNAILQ 842 (952)
Q Consensus 791 ----~d~sFDVVVcieVIEHL~dD~l~~L~eeI~RvLKPG-~LIISTPN~efN~lf~ 842 (952)
.....|+|++.- +++....+.....+.+.|. .++.-.-+.++...+.
T Consensus 64 l~~a~i~~ad~vi~~~-----~~d~~n~~~~~~a~~~~~~~~ii~~~~~~~~~~~l~ 115 (153)
T 1id1_A 64 LKKAGIDRCRAILALS-----DNDADNAFVVLSAKDMSSDVKTVLAVSDSKNLNKIK 115 (153)
T ss_dssp HHHHTTTTCSEEEECS-----SCHHHHHHHHHHHHHHTSSSCEEEECSSGGGHHHHH
T ss_pred HHHcChhhCCEEEEec-----CChHHHHHHHHHHHHHCCCCEEEEEECCHHHHHHHH
Confidence 245788887753 2244444444566777676 5555555555544444
No 402
>1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A
Probab=69.97 E-value=11 Score=39.85 Aligned_cols=94 Identities=21% Similarity=0.360 Sum_probs=63.7
Q ss_pred CCc-cCCCCceeEEEEEEEEeecccchhhhhccccceEEEeccCc---cchhhhhhhhhccccccceecccCCchhhhhh
Q 002218 577 SGI-YPSNGCLSFISYSVSLVIEGETMKELLESREEFEFEMGTGA---VIPQVEVVTAQMSVGQSACFCKELPPQELILA 652 (952)
Q Consensus 577 ~~~-~p~~gs~~~i~y~~~l~~~~~~~~~~~e~~~~~~fe~g~~a---~~~~l~~v~~q~sv~q~~~~~~~l~~~~l~lA 652 (952)
.|. .|..|+.|.|.|+..| +| .++.+. .++|.+|.|. +..-++..+..|.+|..+.+. ++|..
T Consensus 36 ~g~~~p~~~~~v~v~y~g~~--~g----~~fd~~-~~~f~lG~g~~~~~~~~~e~al~~~~~Ge~~~l~--i~p~~---- 102 (336)
T 1p5q_A 36 EGYAKPNEGAIVEVALEGYY--KD----KLFDQR-ELRFEIGEGENLDLPYGLERAIQRMEKGEHSIVY--LKPSY---- 102 (336)
T ss_dssp CCSCCCCTTCEEEEEEEEEE--TT----EEEEEE-EEEEETTCGGGGTCCHHHHHHHTTCCTTCEEEEE--ECTTT----
T ss_pred CCCCCCCCCCeEEEEEEEEE--CC----EEEecC-CeEEEeCCCCccccchHHHHHHhcCCCCCeEEEE--ECCcc----
Confidence 565 7999999999999988 55 356665 6999999886 488999999999999988776 45553
Q ss_pred hccCcccchhcccccccccceeeeecccCCCh
Q 002218 653 AADDSARTFSLLSSRACCLEYHITLLRVTEPP 684 (952)
Q Consensus 653 a~~~~~~DiSlLs~d~~~LEyyI~LL~v~ep~ 684 (952)
+-+........++.... +.|.+.+.....+.
T Consensus 103 ayg~~g~~~~~i~~~~~-l~f~~~L~~~~~A~ 133 (336)
T 1p5q_A 103 AFGSVGKEKFQIPPNAE-LKYELHLKSFEKAK 133 (336)
T ss_dssp TTTTTCBGGGTBCSSCC-EEEEEEEEEEECCC
T ss_pred ccCcCCCCccCCCCCCe-EEEEEEEeeccccc
Confidence 22222211112333333 55666666554433
No 403
>1zkd_A DUF185; NESG, RPR58, structural genomics, PSI, protein structure INI northeast structural genomics consortium, unknown function; 2.10A {Rhodopseudomonas palustris} SCOP: c.66.1.52
Probab=68.19 E-value=12 Score=42.11 Aligned_cols=78 Identities=13% Similarity=0.165 Sum_probs=53.6
Q ss_pred CCEEEEEcCccchHHHHHhcC---C---CCCceEEEEeCChHHHHHHHHHHhhhhhcccccCCCCCCCccEEEEEcCccc
Q 002218 714 ATTLVDFGCGSGSLLDSLLDY---P---TALEKIVGVDISQKSLSRAAKIIHSKLSKKLDAAVPCTDVKSAVLFDGSITV 787 (952)
Q Consensus 714 ~krVLDIGCGeG~ll~~LAr~---g---~~~~qVVGVDISeemLe~ArkrLsa~la~~~~~l~Pr~~~~nVtf~qGDa~d 787 (952)
+-.|+|+|.|.|.++.-+.+. . ....+++-||+|+...+.-++++.. ..+|.+. .++.+
T Consensus 81 ~~~ivElGaG~GtLa~diL~~l~~~p~~~~~~~y~iVE~Sp~Lr~~Q~~~L~~--------------~~~v~W~-~~l~~ 145 (387)
T 1zkd_A 81 TLRLIEIGPGRGTMMADALRALRVLPILYQSLSVHLVEINPVLRQKQQTLLAG--------------IRNIHWH-DSFED 145 (387)
T ss_dssp SEEEEEECCTTSHHHHHHHHHHTTSHHHHTTEEEEEECCCHHHHHHHHHHSTT--------------CSSEEEE-SSGGG
T ss_pred CcEEEEECCCcchHHHHHHHHHHhCCccccccEEEEEecCHHHHHHHHHHhcC--------------CCCeEEe-CChhh
Confidence 347999999999998655432 1 0124899999999988766555421 1257665 35556
Q ss_pred cCCCCCCccEEEEccccccCCh
Q 002218 788 FDSRLHGFDIGTCLEVIEHMEE 809 (952)
Q Consensus 788 Lpf~d~sFDVVVcieVIEHL~d 809 (952)
+|. ..-+|+++|++.-+|-
T Consensus 146 lp~---~~~~viANE~fDAlPv 164 (387)
T 1zkd_A 146 VPE---GPAVILANEYFDVLPI 164 (387)
T ss_dssp SCC---SSEEEEEESSGGGSCC
T ss_pred cCC---CCeEEEeccccccCce
Confidence 652 2568999999998883
No 404
>3l9w_A Glutathione-regulated potassium-efflux system Pro linker, ancillary protein KEFF; potassium channel regulation, domains, antiport; HET: FMN AMP GSH; 1.75A {Escherichia coli} PDB: 3eyw_A* 3l9x_A*
Probab=68.00 E-value=14 Score=41.38 Aligned_cols=102 Identities=16% Similarity=0.162 Sum_probs=65.9
Q ss_pred CCEEEEEcCcc-chH-HHHHhcCCCCCceEEEEeCChHHHHHHHHHHhhhhhcccccCCCCCCCccEEEEEcCccccCC-
Q 002218 714 ATTLVDFGCGS-GSL-LDSLLDYPTALEKIVGVDISQKSLSRAAKIIHSKLSKKLDAAVPCTDVKSAVLFDGSITVFDS- 790 (952)
Q Consensus 714 ~krVLDIGCGe-G~l-l~~LAr~g~~~~qVVGVDISeemLe~ArkrLsa~la~~~~~l~Pr~~~~nVtf~qGDa~dLpf- 790 (952)
..+|+=+|+|. |.. +..|.+.+ ..|++||.+++.++.+++. .+.++.||+.+...
T Consensus 4 ~~~viIiG~Gr~G~~va~~L~~~g---~~vvvId~d~~~v~~~~~~-------------------g~~vi~GDat~~~~L 61 (413)
T 3l9w_A 4 GMRVIIAGFGRFGQITGRLLLSSG---VKMVVLDHDPDHIETLRKF-------------------GMKVFYGDATRMDLL 61 (413)
T ss_dssp CCSEEEECCSHHHHHHHHHHHHTT---CCEEEEECCHHHHHHHHHT-------------------TCCCEESCTTCHHHH
T ss_pred CCeEEEECCCHHHHHHHHHHHHCC---CCEEEEECCHHHHHHHHhC-------------------CCeEEEcCCCCHHHH
Confidence 45788899874 333 34455566 7899999999999887531 35578899887542
Q ss_pred ---CCCCccEEEEccccccCChhHHHHHHHHHHHccCCC-EEEEEecCCchhHHHH
Q 002218 791 ---RLHGFDIGTCLEVIEHMEEDEASQFGNIVLSSFRPR-ILIVSTPNYEYNAILQ 842 (952)
Q Consensus 791 ---~d~sFDVVVcieVIEHL~dD~l~~L~eeI~RvLKPG-~LIISTPN~efN~lf~ 842 (952)
.....|+|++.- +++......-...+.+.|. .+|+-+-+.+....+.
T Consensus 62 ~~agi~~A~~viv~~-----~~~~~n~~i~~~ar~~~p~~~Iiara~~~~~~~~L~ 112 (413)
T 3l9w_A 62 ESAGAAKAEVLINAI-----DDPQTNLQLTEMVKEHFPHLQIIARARDVDHYIRLR 112 (413)
T ss_dssp HHTTTTTCSEEEECC-----SSHHHHHHHHHHHHHHCTTCEEEEEESSHHHHHHHH
T ss_pred HhcCCCccCEEEECC-----CChHHHHHHHHHHHHhCCCCeEEEEECCHHHHHHHH
Confidence 245788887642 2344444444577888898 6666555544444444
No 405
>3oe2_A Peptidyl-prolyl CIS-trans isomerase; FKBP, ppiase, FK506; HET: TAR SRT; 1.60A {Pseudomonas syringae PV} SCOP: d.26.1.0
Probab=66.05 E-value=10 Score=39.45 Aligned_cols=89 Identities=19% Similarity=0.289 Sum_probs=63.4
Q ss_pred CCccCCCCceeEEEEEEEEeecccchhhhhcc-ccceEEEeccCccchhhhhhhhhccccccceecccCCchhhhhhhcc
Q 002218 577 SGIYPSNGCLSFISYSVSLVIEGETMKELLES-REEFEFEMGTGAVIPQVEVVTAQMSVGQSACFCKELPPQELILAAAD 655 (952)
Q Consensus 577 ~~~~p~~gs~~~i~y~~~l~~~~~~~~~~~e~-~~~~~fe~g~~a~~~~l~~v~~q~sv~q~~~~~~~l~~~~l~lAa~~ 655 (952)
+|-.|..|+.|.|.|...|. +|+ +++| ...++|.+| .+++-++..+..|.+|..+.+. +||..-+=....
T Consensus 128 ~G~~p~~gd~V~V~Y~g~l~-dG~----vfDss~~P~~f~lG--~vI~G~eeaL~gMk~Gek~~v~--IPp~lAYG~~g~ 198 (219)
T 3oe2_A 128 TGPKPDANGRVEVRYVGRLP-DGK----IFDQSTQPQWFRLD--SVISGWTSALQNMPTGAKWRLV--IPSDQAYGAEGA 198 (219)
T ss_dssp CSCCCCTTSEEEEEEEEECT-TSC----EEEECSSCEEEEGG--GSCHHHHHHHTTCCTTCEEEEE--ECGGGTTTTTCB
T ss_pred CCccCCCCCEEEEEEEEEEC-CCC----EeeccCCcEEEEec--chhHHHHHHHhCCCCCCEEEEE--ECchhcCCCCCC
Confidence 57789999999999999985 443 3444 466888877 7999999999999999998887 666533322111
Q ss_pred Ccccchhcccccccccceeeeeccc
Q 002218 656 DSARTFSLLSSRACCLEYHITLLRV 680 (952)
Q Consensus 656 ~~~~DiSlLs~d~~~LEyyI~LL~v 680 (952)
. ..+|-.+. +.|.|.++.+
T Consensus 199 ---~--~~IPpnst-LvFeVeLl~I 217 (219)
T 3oe2_A 199 ---G--DLIDPFTP-LVFEIELIAV 217 (219)
T ss_dssp ---T--TTBCTTCC-EEEEEEEEEE
T ss_pred ---C--CCCCCCCe-EEEEEEEEEE
Confidence 1 12445555 7777777764
No 406
>1q1c_A FK506-binding protein 4; rotamase, TPR repeat, nuclear protein, phosphorylation, isomerase; 1.90A {Homo sapiens} SCOP: d.26.1.1 d.26.1.1 PDB: 1n1a_A 1rot_A 1rou_A
Probab=64.86 E-value=6.3 Score=42.02 Aligned_cols=94 Identities=20% Similarity=0.370 Sum_probs=65.7
Q ss_pred CCc-cCCCCceeEEEEEEEEeecccchhhhhccccceEEEeccCc---cchhhhhhhhhccccccceecccCCchhhhhh
Q 002218 577 SGI-YPSNGCLSFISYSVSLVIEGETMKELLESREEFEFEMGTGA---VIPQVEVVTAQMSVGQSACFCKELPPQELILA 652 (952)
Q Consensus 577 ~~~-~p~~gs~~~i~y~~~l~~~~~~~~~~~e~~~~~~fe~g~~a---~~~~l~~v~~q~sv~q~~~~~~~l~~~~l~lA 652 (952)
.|. .|..|..+-|.|...+ +|+ .+++ ..|+|.+|.|. +++-++..+..|.+|..+.+. +||.--+=.
T Consensus 179 ~G~~~~~~gd~V~i~y~g~~--dG~----~fd~-~~~~f~lG~g~~~~~i~G~e~~l~gmk~Ge~~~v~--ip~~~~yG~ 249 (280)
T 1q1c_A 179 EGYAKPNEGAIVEVALEGYY--KDK----LFDQ-RELRFEIGEGENLDLPYGLERAIQRMEKGEHSIVY--LKPSYAFGS 249 (280)
T ss_dssp SCSCCCCTTCEEEEEEEEEE--TTE----EEEE-EEEEEETTCGGGGTCCHHHHHHHTTCCTTCEEEEE--ECGGGTTTT
T ss_pred cccccccCCceEEEEEEEEe--CCE----EEec-CCeEEEecCCcccccchhHHHHHhCCCCCcEEEEE--EChhHcCCc
Confidence 454 6899999999999987 553 5666 57999999998 499999999999999999877 354321111
Q ss_pred hccCcccchhcccccccccceeeeecccCCCh
Q 002218 653 AADDSARTFSLLSSRACCLEYHITLLRVTEPP 684 (952)
Q Consensus 653 a~~~~~~DiSlLs~d~~~LEyyI~LL~v~ep~ 684 (952)
. + .+++ .+|.... +.|.|.++.+..+.
T Consensus 250 ~-~--~~~~-~IP~~~~-l~f~V~L~~i~~~~ 276 (280)
T 1q1c_A 250 V-G--KEKF-QIPPNAE-LKYELHLKSFEKAK 276 (280)
T ss_dssp T-C--BGGG-TBCTTCC-EEEEEEEEEEECCC
T ss_pred C-C--CccC-ccCCCCe-EEEEEEEEEEeCCC
Confidence 1 1 0111 1334444 78888888765543
No 407
>3jxv_A 70 kDa peptidyl-prolyl isomerase; FKBP- binding domain five-stranded anti-parallel beta-sheet alpha-helix crossing THis sheet; 2.08A {Triticum aestivum} PDB: 3jym_A
Probab=64.00 E-value=7.5 Score=42.49 Aligned_cols=91 Identities=20% Similarity=0.365 Sum_probs=64.7
Q ss_pred ccCCCCceeEEEEEEEEeecccchhhhhcc-----ccceEEEeccCccchhhhhhhhhccccccceecccCCchhhhhhh
Q 002218 579 IYPSNGCLSFISYSVSLVIEGETMKELLES-----REEFEFEMGTGAVIPQVEVVTAQMSVGQSACFCKELPPQELILAA 653 (952)
Q Consensus 579 ~~p~~gs~~~i~y~~~l~~~~~~~~~~~e~-----~~~~~fe~g~~a~~~~l~~v~~q~sv~q~~~~~~~l~~~~l~lAa 653 (952)
-.|..|+.+-|.|...|. +|+ .+++ ...|+|.+|.|.+++-++..+..|.+|..+.+. +||..-+=..
T Consensus 258 ~~~~~gd~V~v~y~g~l~-dG~----~fd~~~~~~~~p~~f~~G~g~~i~G~e~~l~gm~~Ge~~~v~--ip~~~aYG~~ 330 (356)
T 3jxv_A 258 ERPNEGAVVTVKITGKLQ-DGT----VFLKKGHDEQEPFEFKTDEEAVIEGLDRAVLNMKKGEVALVT--IPPEYAYGST 330 (356)
T ss_dssp CCCCTTCEEEEEEEEEES-SSC----EEEEESCTTSCCCEEETTTTSSCHHHHHHHTTCCBTCEEEEE--ECGGGTTTTS
T ss_pred CCCCCCCEEEEEEEEEEC-CCC----EEeeccccCCcCEEEEECCCccchHHHHHHhCCCCCCEEEEE--EChHHccCCC
Confidence 589999999999999984 343 3333 456999999999999999999999999999887 5665433221
Q ss_pred ccCcccchhcccccccccceeeeeccc
Q 002218 654 ADDSARTFSLLSSRACCLEYHITLLRV 680 (952)
Q Consensus 654 ~~~~~~DiSlLs~d~~~LEyyI~LL~v 680 (952)
... ....++..+. +.|.|.++..
T Consensus 331 ~~~---~~~~Ip~~~~-l~f~vel~~~ 353 (356)
T 3jxv_A 331 ESK---QDAIVPPNST-VIYEVELVSF 353 (356)
T ss_dssp CEE---SSSEECTTCC-EEEEEEEEEE
T ss_pred CcC---CCCcCCcCCe-EEEEEEEEEE
Confidence 110 1122344444 7777777654
No 408
>3me5_A Cytosine-specific methyltransferase; structural genomics, protein structure initiative, NEW YORK structural genomix research consortium; 1.75A {Shigella flexneri 2A} PDB: 3lx6_A
Probab=63.77 E-value=7.2 Score=44.96 Aligned_cols=60 Identities=10% Similarity=0.062 Sum_probs=44.5
Q ss_pred CCEEEEEcCccchHHHHHhcCCCCCceEEEEeCChHHHHHHHHHHhhhhhcccccCCCCCCCccEEEEEcCccccC
Q 002218 714 ATTLVDFGCGSGSLLDSLLDYPTALEKIVGVDISQKSLSRAAKIIHSKLSKKLDAAVPCTDVKSAVLFDGSITVFD 789 (952)
Q Consensus 714 ~krVLDIGCGeG~ll~~LAr~g~~~~qVVGVDISeemLe~ArkrLsa~la~~~~~l~Pr~~~~nVtf~qGDa~dLp 789 (952)
..+++|+=||-|.+...+.+.| ...|.++|+++.+.+.-+.+.. ..+...++.+|+.++.
T Consensus 88 ~~~viDLFaG~GGlslG~~~aG--~~~v~avE~d~~A~~ty~~N~~--------------~~p~~~~~~~DI~~i~ 147 (482)
T 3me5_A 88 AFRFIDLFAGIGGIRRGFESIG--GQCVFTSEWNKHAVRTYKANHY--------------CDPATHHFNEDIRDIT 147 (482)
T ss_dssp SEEEEEESCTTSHHHHHHHTTT--EEEEEEECCCHHHHHHHHHHSC--------------CCTTTCEEESCTHHHH
T ss_pred cceEEEecCCccHHHHHHHHCC--CEEEEEEeCCHHHHHHHHHhcc--------------cCCCcceeccchhhhh
Confidence 3589999999999999998877 2458999999988877765431 1123456678887764
No 409
>2ew2_A 2-dehydropantoate 2-reductase, putative; alpha-structure, alpha-beta structure, structural genomics, protein structure initiative; HET: MSE; 2.00A {Enterococcus faecalis}
Probab=63.69 E-value=67 Score=32.94 Aligned_cols=101 Identities=14% Similarity=0.074 Sum_probs=54.8
Q ss_pred CEEEEEcCcc-c-hHHHHHhcCCCCCceEEEEeCChHHHHHHHHHHhhhhhcccccCCCCCCCccEEEEEc---CccccC
Q 002218 715 TTLVDFGCGS-G-SLLDSLLDYPTALEKIVGVDISQKSLSRAAKIIHSKLSKKLDAAVPCTDVKSAVLFDG---SITVFD 789 (952)
Q Consensus 715 krVLDIGCGe-G-~ll~~LAr~g~~~~qVVGVDISeemLe~ArkrLsa~la~~~~~l~Pr~~~~nVtf~qG---Da~dLp 789 (952)
.+|.=||+|. | .++..|++.+ .+|+++|.+++.++..++.- ..- ... ........ +..+..
T Consensus 4 m~i~iiG~G~~G~~~a~~l~~~g---~~V~~~~r~~~~~~~~~~~g---~~~-------~~~-~~~~~~~~~~~~~~~~~ 69 (316)
T 2ew2_A 4 MKIAIAGAGAMGSRLGIMLHQGG---NDVTLIDQWPAHIEAIRKNG---LIA-------DFN-GEEVVANLPIFSPEEID 69 (316)
T ss_dssp CEEEEECCSHHHHHHHHHHHHTT---CEEEEECSCHHHHHHHHHHC---EEE-------EET-TEEEEECCCEECGGGCC
T ss_pred CeEEEECcCHHHHHHHHHHHhCC---CcEEEEECCHHHHHHHHhCC---EEE-------EeC-CCeeEecceeecchhhc
Confidence 4789999984 3 3445677776 68999999998777664420 000 000 00000000 111111
Q ss_pred CCCCCccEEEEccccccCChhHHHHHHHHHHHccCCCEEEEEecC
Q 002218 790 SRLHGFDIGTCLEVIEHMEEDEASQFGNIVLSSFRPRILIVSTPN 834 (952)
Q Consensus 790 f~d~sFDVVVcieVIEHL~dD~l~~L~eeI~RvLKPG~LIISTPN 834 (952)
.....+|+|+..- +......+.+.+...++|+.++++..|
T Consensus 70 ~~~~~~d~vi~~v-----~~~~~~~v~~~l~~~l~~~~~iv~~~~ 109 (316)
T 2ew2_A 70 HQNEQVDLIIALT-----KAQQLDAMFKAIQPMITEKTYVLCLLN 109 (316)
T ss_dssp TTSCCCSEEEECS-----CHHHHHHHHHHHGGGCCTTCEEEECCS
T ss_pred ccCCCCCEEEEEe-----ccccHHHHHHHHHHhcCCCCEEEEecC
Confidence 1112688887643 333344455568888998855665544
No 410
>2oo3_A Protein involved in catabolism of external DNA; structural genomics, unknown function, PSI-2, protein structure initiative; 2.00A {Legionella pneumophila subsp} SCOP: c.66.1.59
Probab=62.80 E-value=3.4 Score=44.71 Aligned_cols=73 Identities=8% Similarity=-0.074 Sum_probs=55.3
Q ss_pred CCCCEEEEEcCccchHHHHHhcCCCCCceEEEEeCChHHHHHHHHHHhhhhhcccccCCCCCCCccEEEEEcCccc-c--
Q 002218 712 SCATTLVDFGCGSGSLLDSLLDYPTALEKIVGVDISQKSLSRAAKIIHSKLSKKLDAAVPCTDVKSAVLFDGSITV-F-- 788 (952)
Q Consensus 712 ~k~krVLDIGCGeG~ll~~LAr~g~~~~qVVGVDISeemLe~ArkrLsa~la~~~~~l~Pr~~~~nVtf~qGDa~d-L-- 788 (952)
..+..+||+=+|+|.++..+...+ .+++.||.++..++.-++++. ...+++++++|... +
T Consensus 90 ~n~~~~LDlfaGSGaLgiEaLS~~---d~~vfvE~~~~a~~~L~~Nl~--------------~~~~~~V~~~D~~~~L~~ 152 (283)
T 2oo3_A 90 INLNSTLSYYPGSPYFAINQLRSQ---DRLYLCELHPTEYNFLLKLPH--------------FNKKVYVNHTDGVSKLNA 152 (283)
T ss_dssp HSSSSSCCEEECHHHHHHHHSCTT---SEEEEECCSHHHHHHHTTSCC--------------TTSCEEEECSCHHHHHHH
T ss_pred hcCCCceeEeCCcHHHHHHHcCCC---CeEEEEeCCHHHHHHHHHHhC--------------cCCcEEEEeCcHHHHHHH
Confidence 456779999999999999998854 799999999998887766542 12478999999644 2
Q ss_pred -CCCCCCccEEEEc
Q 002218 789 -DSRLHGFDIGTCL 801 (952)
Q Consensus 789 -pf~d~sFDVVVci 801 (952)
..+...||+|+.=
T Consensus 153 l~~~~~~fdLVfiD 166 (283)
T 2oo3_A 153 LLPPPEKRGLIFID 166 (283)
T ss_dssp HCSCTTSCEEEEEC
T ss_pred hcCCCCCccEEEEC
Confidence 1234569999773
No 411
>2g1u_A Hypothetical protein TM1088A; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: AMP; 1.50A {Thermotoga maritima} PDB: 3l4b_A*
Probab=61.85 E-value=18 Score=33.98 Aligned_cols=102 Identities=20% Similarity=0.216 Sum_probs=55.7
Q ss_pred CCCCEEEEEcCcc-chH-HHHHhcCCCCCceEEEEeCChHHHHHHHHHHhhhhhcccccCCCCCCCccEEEEEcCccccC
Q 002218 712 SCATTLVDFGCGS-GSL-LDSLLDYPTALEKIVGVDISQKSLSRAAKIIHSKLSKKLDAAVPCTDVKSAVLFDGSITVFD 789 (952)
Q Consensus 712 ~k~krVLDIGCGe-G~l-l~~LAr~g~~~~qVVGVDISeemLe~ArkrLsa~la~~~~~l~Pr~~~~nVtf~qGDa~dLp 789 (952)
....+|+=+|||. |.. +..|.+.+ .+|+++|.+++.++.+++ ...+.++.+|..+..
T Consensus 17 ~~~~~v~IiG~G~iG~~la~~L~~~g---~~V~vid~~~~~~~~~~~------------------~~g~~~~~~d~~~~~ 75 (155)
T 2g1u_A 17 QKSKYIVIFGCGRLGSLIANLASSSG---HSVVVVDKNEYAFHRLNS------------------EFSGFTVVGDAAEFE 75 (155)
T ss_dssp CCCCEEEEECCSHHHHHHHHHHHHTT---CEEEEEESCGGGGGGSCT------------------TCCSEEEESCTTSHH
T ss_pred cCCCcEEEECCCHHHHHHHHHHHhCC---CeEEEEECCHHHHHHHHh------------------cCCCcEEEecCCCHH
Confidence 3568999999974 433 34555566 689999998765443310 012345666654321
Q ss_pred C----CCCCccEEEEccccccCChhHHHHHHHHHHHccCCC-EEEEEecCCchhH
Q 002218 790 S----RLHGFDIGTCLEVIEHMEEDEASQFGNIVLSSFRPR-ILIVSTPNYEYNA 839 (952)
Q Consensus 790 f----~d~sFDVVVcieVIEHL~dD~l~~L~eeI~RvLKPG-~LIISTPN~efN~ 839 (952)
. ....+|+|+..- +.+........+.+.+.|. .++..+-+..+..
T Consensus 76 ~l~~~~~~~ad~Vi~~~-----~~~~~~~~~~~~~~~~~~~~~iv~~~~~~~~~~ 125 (155)
T 2g1u_A 76 TLKECGMEKADMVFAFT-----NDDSTNFFISMNARYMFNVENVIARVYDPEKIK 125 (155)
T ss_dssp HHHTTTGGGCSEEEECS-----SCHHHHHHHHHHHHHTSCCSEEEEECSSGGGHH
T ss_pred HHHHcCcccCCEEEEEe-----CCcHHHHHHHHHHHHHCCCCeEEEEECCHHHHH
Confidence 1 134689887642 2233223223355655666 5555544444433
No 412
>1di2_A XLRBPA, double stranded RNA binding protein A; protein-RNA complex, protein-RNA interactions, RNA-bining protein; 1.90A {Xenopus laevis} SCOP: d.50.1.1
Probab=60.59 E-value=7 Score=32.96 Aligned_cols=68 Identities=13% Similarity=0.123 Sum_probs=47.0
Q ss_pred ChhhHHHhhhhhcccCcceeccccCCccccccchhhhhhhhhcccccccccccCCCcccCCCceeEEEEEeeccCCcccc
Q 002218 394 FPREMLFMFCRQHWLSEPVFSTCSNSLKESSESSRFYEKSAALESAETGKECTSGGGTAASDNVRCEVKIFSKSRDPILE 473 (952)
Q Consensus 394 ~pr~~l~~fc~~~~l~ep~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~c~v~~~s~~~~~~~~ 473 (952)
.|...|-.+|..+.+..|.|.... .. |......|.|+|.|-.+ +
T Consensus 1 ~p~s~LqE~~q~~~~~~p~Y~~~~----------------------------~~--Gp~h~~~F~~~v~v~~~----~-- 44 (69)
T 1di2_A 1 MPVGSLQELAVQKGWRLPEYTVAQ----------------------------ES--GPPHKREFTITCRVETF----V-- 44 (69)
T ss_dssp CHHHHHHHHHHHHTCCCCEEEEEE----------------------------EE--SCGGGCEEEEEEEETTE----E--
T ss_pred CCHHHHHHHHHHcCCCCCEEEEEE----------------------------eE--CCCCCCeEEEEEEECCE----E--
Confidence 488999999999999999998650 01 11122349999998431 1
Q ss_pred cCchhhhhhhhhhHhhhhhHHHHHHH
Q 002218 474 CSPKEFYKKQNESIENASLKVLSWLN 499 (952)
Q Consensus 474 ~~~~~~~~~~~dai~~a~l~~l~~~~ 499 (952)
....=+..-+|=|+||..+|..|.
T Consensus 45 --~~G~G~sKK~Aeq~AA~~al~~L~ 68 (69)
T 1di2_A 45 --ETGSGTSKQVAKRVAAEKLLTKFK 68 (69)
T ss_dssp --EEEEESSHHHHHHHHHHHHHHHHH
T ss_pred --EEeecCCHHHHHHHHHHHHHHHHh
Confidence 122334556799999999998774
No 413
>2aef_A Calcium-gated potassium channel MTHK; rossmann fold, helix-turn-helix, Ca2+ binding, flexible interface; 1.70A {Methanothermobacterthermautotrophicus} PDB: 2aej_A 2aem_A 3rbx_A 2ogu_A 2fy8_A 3kxd_A
Probab=60.38 E-value=41 Score=33.60 Aligned_cols=99 Identities=13% Similarity=0.033 Sum_probs=62.9
Q ss_pred CCEEEEEcCccchHHHHH----hcCCCCCceEEEEeCChHHHHHHHHHHhhhhhcccccCCCCCCCccEEEEEcCccccC
Q 002218 714 ATTLVDFGCGSGSLLDSL----LDYPTALEKIVGVDISQKSLSRAAKIIHSKLSKKLDAAVPCTDVKSAVLFDGSITVFD 789 (952)
Q Consensus 714 ~krVLDIGCGeG~ll~~L----Ar~g~~~~qVVGVDISeemLe~ArkrLsa~la~~~~~l~Pr~~~~nVtf~qGDa~dLp 789 (952)
.++|+=+|+| .++..+ .+.+ . |+++|.+++.++.++ ..+.++.||+.+..
T Consensus 9 ~~~viI~G~G--~~G~~la~~L~~~g---~-v~vid~~~~~~~~~~--------------------~~~~~i~gd~~~~~ 62 (234)
T 2aef_A 9 SRHVVICGWS--ESTLECLRELRGSE---V-FVLAEDENVRKKVLR--------------------SGANFVHGDPTRVS 62 (234)
T ss_dssp -CEEEEESCC--HHHHHHHHHSTTSE---E-EEEESCGGGHHHHHH--------------------TTCEEEESCTTCHH
T ss_pred CCEEEEECCC--hHHHHHHHHHHhCC---e-EEEEECCHHHHHHHh--------------------cCCeEEEcCCCCHH
Confidence 4689999986 444333 3334 6 999999988776553 14678889987643
Q ss_pred C----CCCCccEEEEccccccCChhHHHHHHHHHHHccCCC-EEEEEecCCchhHHHHh
Q 002218 790 S----RLHGFDIGTCLEVIEHMEEDEASQFGNIVLSSFRPR-ILIVSTPNYEYNAILQK 843 (952)
Q Consensus 790 f----~d~sFDVVVcieVIEHL~dD~l~~L~eeI~RvLKPG-~LIISTPN~efN~lf~~ 843 (952)
. .....|+|++.- +++....+.....+.+.|+ .++.-.-+.++...+..
T Consensus 63 ~l~~a~i~~ad~vi~~~-----~~d~~n~~~~~~a~~~~~~~~iia~~~~~~~~~~l~~ 116 (234)
T 2aef_A 63 DLEKANVRGARAVIVDL-----ESDSETIHCILGIRKIDESVRIIAEAERYENIEQLRM 116 (234)
T ss_dssp HHHHTTCTTCSEEEECC-----SCHHHHHHHHHHHHHHCSSSEEEEECSSGGGHHHHHH
T ss_pred HHHhcCcchhcEEEEcC-----CCcHHHHHHHHHHHHHCCCCeEEEEECCHhHHHHHHH
Confidence 1 245789888742 3344444444567778888 66666666565555543
No 414
>1q6h_A FKBP-type peptidyl-prolyl CIS-trans isomerase FKP; chaperone, peptidyl-prolyl isomerase, heat shock protein, FK family; HET: MSE; 1.97A {Escherichia coli} SCOP: d.26.1.1 PDB: 1q6i_A* 1q6u_A
Probab=57.38 E-value=15 Score=38.11 Aligned_cols=87 Identities=20% Similarity=0.361 Sum_probs=60.4
Q ss_pred CCccCCCCceeEEEEEEEEeecccchhhhhccc----cceEEEeccCccchhhhhhhhhccccccceecccCCchhhhhh
Q 002218 577 SGIYPSNGCLSFISYSVSLVIEGETMKELLESR----EEFEFEMGTGAVIPQVEVVTAQMSVGQSACFCKELPPQELILA 652 (952)
Q Consensus 577 ~~~~p~~gs~~~i~y~~~l~~~~~~~~~~~e~~----~~~~fe~g~~a~~~~l~~v~~q~sv~q~~~~~~~l~~~~l~lA 652 (952)
+|--|..|+.|.|.|...|. +|+ .++|. ..++|.+ |.+++-++..+..|.+|....|. +||..-+=.
T Consensus 132 ~G~~p~~gD~V~V~Y~g~l~-dG~----vfdss~~~g~p~~f~l--g~vI~G~eeaL~gMk~Gek~~v~--IP~~laYG~ 202 (224)
T 1q6h_A 132 KGEAPKDSDTVVVNYKGTLI-DGK----EFDNSYTRGEPLSFRL--DGVIPGWTEGLKNIKKGGKIKLV--IPPELAYGK 202 (224)
T ss_dssp SSCCCCTTCEEEEEEEEEET-TSC----EEEEGGGGTSCEEEEG--GGSCHHHHHHGGGSCTTCEEEEE--ECGGGTTTT
T ss_pred cCccccCCCEEEEEEEEEeC-CCC----EEeeccccCCCEEEEc--CCcchhHHHHHcCCCCCCEEEEE--ECchhhcCc
Confidence 57789999999999999985 454 34443 5678877 58999999999999999999885 555432211
Q ss_pred hccCcccchhcccccccccceeeeecc
Q 002218 653 AADDSARTFSLLSSRACCLEYHITLLR 679 (952)
Q Consensus 653 a~~~~~~DiSlLs~d~~~LEyyI~LL~ 679 (952)
-. .. .+|.... +.|.|.++.
T Consensus 203 ~g---~~---~IPp~st-LiF~VeL~~ 222 (224)
T 1q6h_A 203 AG---VP---GIPPNST-LVFDVELLD 222 (224)
T ss_dssp TC---BT---TBCTTCC-EEEEEEEEE
T ss_pred CC---CC---CCCCCCE-EEEEEEEEE
Confidence 11 01 1344444 667676654
No 415
>3pvc_A TRNA 5-methylaminomethyl-2-thiouridine biosynthes bifunctional protein MNMC; structural genomics, PSI-biology; HET: FAD; 2.31A {Yersinia pestis} PDB: 3sgl_A*
Probab=57.15 E-value=8.2 Score=45.52 Aligned_cols=149 Identities=11% Similarity=0.016 Sum_probs=74.8
Q ss_pred hhhhhhhcCCc--hhHHHHHHHHHHH-h----h--cCCCCEEEEEcCccchHHHHHhcCC-----------CCCceEEEE
Q 002218 685 EDRMEQALFSP--PLSKQRVEYALQH-I----K--ESCATTLVDFGCGSGSLLDSLLDYP-----------TALEKIVGV 744 (952)
Q Consensus 685 EeRye~~~F~P--PL~~QR~efVldl-L----~--~~k~krVLDIGCGeG~ll~~LAr~g-----------~~~~qVVGV 744 (952)
..+|...+|+. .+.+.|+-|+... | . ..+.-+|+|+|.|+|.....+.+.. ....+++.+
T Consensus 21 s~~f~d~y~s~~~~~~e~~~~f~~~~~l~~~~~~~~~~~~~i~e~gfG~G~n~l~~~~~~~~~~~~~p~~~~~~l~~~s~ 100 (689)
T 3pvc_A 21 SEQFGDIYFSNEDGLEETHHVFLKGNGFPARFASHPQQSCIFAETGFGTGLNFLTLWRDFALFRQQSPNATLRRLHYISF 100 (689)
T ss_dssp --------CCSTTSHHHHHHHTTTTTTTTHHHHHCCSSEEEEEEECCTTSHHHHHHHHHHHHHHHHCTTSSCCEEEEEEE
T ss_pred CcccCCcccCCcCHHHhhHhhccccCCHHHHHhhCCCCceEEEEecCchHHHHHHHHHHHHHhhhhCCCCCCceEEEEEe
Confidence 34555555554 4666666665321 1 1 2244689999999999886554321 012578999
Q ss_pred eC---ChHHHHHHHHHHh-------hhhhcccccCCC--C----CCCccEEEEEcCccccCCC-----CCCccEEEEccc
Q 002218 745 DI---SQKSLSRAAKIIH-------SKLSKKLDAAVP--C----TDVKSAVLFDGSITVFDSR-----LHGFDIGTCLEV 803 (952)
Q Consensus 745 DI---SeemLe~ArkrLs-------a~la~~~~~l~P--r----~~~~nVtf~qGDa~dLpf~-----d~sFDVVVcieV 803 (952)
+. +.+-+..|-.... +.++........ | .+..+++++.||+.+.-.. ...+|+++.-..
T Consensus 101 E~~p~~~~~l~~~~~~~~~~~~~~~~l~~~~~~~~~~~~r~~~~~~~~~l~l~~gd~~~~l~~~~~~~~~~~da~flD~f 180 (689)
T 3pvc_A 101 EKYPLHVADLASAHARWPELASFAEQLRAQWPLPLAGCHRILLADGAITLDLWFGDVNTLLPTLDDSLNNQVDAWFLDGF 180 (689)
T ss_dssp ESSCCCHHHHHHHHTTCGGGHHHHHHHHHTCCCCCSEEEEEEETTTTEEEEEEESCHHHHGGGCCGGGTTCEEEEEECSS
T ss_pred eCCCCCHHHHHHHHHhCcchhHHHHHHHHhCcccCCCceEEEecCCcEEEEEEccCHHHHHhhcccccCCceeEEEECCC
Confidence 98 5555554321100 111110000000 0 1123688999999764322 367999977443
Q ss_pred cccCChh-HHHHHHHHHHHccCCCEEEEEec
Q 002218 804 IEHMEED-EASQFGNIVLSSFRPRILIVSTP 833 (952)
Q Consensus 804 IEHL~dD-~l~~L~eeI~RvLKPG~LIISTP 833 (952)
--.-.++ -...|...|+++++||..+.+..
T Consensus 181 ~p~~np~~w~~~~~~~l~~~~~~g~~~~t~~ 211 (689)
T 3pvc_A 181 APAKNPDMWNEQLFNAMARMTRPGGTFSTFT 211 (689)
T ss_dssp CC--CCTTCSHHHHHHHHHHEEEEEEEEESC
T ss_pred CCCCChhhhhHHHHHHHHHHhCCCCEEEecc
Confidence 2111111 11344557999999995555443
No 416
>1lnq_A MTHK channels, potassium channel related protein; rossman fold, helix bundle, membrane protein; 3.30A {Methanothermobacter thermautotrophicusorganism_taxid} SCOP: c.2.1.9 d.286.1.1 f.14.1.1 PDB: 3rbz_A
Probab=56.96 E-value=35 Score=36.28 Aligned_cols=102 Identities=14% Similarity=0.054 Sum_probs=64.8
Q ss_pred CCEEEEEcCccchHHHHHhcCCC-CCceEEEEeCChHHHHHHHHHHhhhhhcccccCCCCCCCccEEEEEcCccccCC--
Q 002218 714 ATTLVDFGCGSGSLLDSLLDYPT-ALEKIVGVDISQKSLSRAAKIIHSKLSKKLDAAVPCTDVKSAVLFDGSITVFDS-- 790 (952)
Q Consensus 714 ~krVLDIGCGeG~ll~~LAr~g~-~~~qVVGVDISeemLe~ArkrLsa~la~~~~~l~Pr~~~~nVtf~qGDa~dLpf-- 790 (952)
.++|+=+|+ |..+..+++.-. ... |+.+|.+++.++ +++ ..+.++.||+.+...
T Consensus 115 ~~~viI~G~--G~~g~~l~~~L~~~g~-v~vid~~~~~~~-~~~-------------------~~~~~i~gd~~~~~~L~ 171 (336)
T 1lnq_A 115 SRHVVICGW--SESTLECLRELRGSEV-FVLAEDENVRKK-VLR-------------------SGANFVHGDPTRVSDLE 171 (336)
T ss_dssp -CEEEEESC--CHHHHHHHTTGGGSCE-EEEESCGGGHHH-HHH-------------------TTCEEEESCTTSHHHHH
T ss_pred cCCEEEECC--cHHHHHHHHHHHhCCc-EEEEeCChhhhh-HHh-------------------CCcEEEEeCCCCHHHHH
Confidence 457888887 455555543310 015 999999999887 532 156789999876532
Q ss_pred --CCCCccEEEEccccccCChhHHHHHHHHHHHccCCC-EEEEEecCCchhHHHHh
Q 002218 791 --RLHGFDIGTCLEVIEHMEEDEASQFGNIVLSSFRPR-ILIVSTPNYEYNAILQK 843 (952)
Q Consensus 791 --~d~sFDVVVcieVIEHL~dD~l~~L~eeI~RvLKPG-~LIISTPN~efN~lf~~ 843 (952)
.....|.|++.- ++|....+.-...+-+.|. .++.-.-+.++...+..
T Consensus 172 ~a~i~~a~~vi~~~-----~~d~~n~~~~~~ar~~~~~~~iiar~~~~~~~~~l~~ 222 (336)
T 1lnq_A 172 KANVRGARAVIVDL-----ESDSETIHCILGIRKIDESVRIIAEAERYENIEQLRM 222 (336)
T ss_dssp HTCSTTEEEEEECC-----SSHHHHHHHHHHHHTTCTTSEEEEECSSGGGHHHHHH
T ss_pred hcChhhccEEEEcC-----CccHHHHHHHHHHHHHCCCCeEEEEECCHHHHHHHHH
Confidence 245788888742 3355455555577888888 66666666555555543
No 417
>3adj_A F21M12.9 protein; HYL1, miRNA processing, RNA binding protein, gene regulation; 3.00A {Arabidopsis thaliana} PDB: 2l2m_A
Probab=56.70 E-value=7.3 Score=33.66 Aligned_cols=68 Identities=10% Similarity=0.131 Sum_probs=46.8
Q ss_pred hhhHHHhhhhhcccCcceeccccCCccccccchhhhhhhhhcccccccccccCCCcccCCCceeEEEEEeeccCCccccc
Q 002218 395 PREMLFMFCRQHWLSEPVFSTCSNSLKESSESSRFYEKSAALESAETGKECTSGGGTAASDNVRCEVKIFSKSRDPILEC 474 (952)
Q Consensus 395 pr~~l~~fc~~~~l~ep~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~c~v~~~s~~~~~~~~~ 474 (952)
|+..|-.+|..+.+..|.|.... .. |......|.|+|.|-.+ + +
T Consensus 6 ~Kt~LqE~~q~~~~~~p~Y~~~~----------------------------~~--Gp~h~~~F~~~v~v~g~----~--~ 49 (76)
T 3adj_A 6 CKNLLQEYAQKMNYAIPLYQCQK----------------------------VE--TLGRVTQFTCTVEIGGI----K--Y 49 (76)
T ss_dssp HHHHHHHHHHTTTCCCCEEEEEE----------------------------EE--CSSSCEEEEEEEEETTE----E--E
T ss_pred HHHHHHHHHHHhCCCCCeEEEee----------------------------cc--CCCCCCcEEEEEEECCE----E--E
Confidence 68899999999999999987650 01 11122339999998432 1 1
Q ss_pred CchhhhhhhhhhHhhhhhHHHHHHH
Q 002218 475 SPKEFYKKQNESIENASLKVLSWLN 499 (952)
Q Consensus 475 ~~~~~~~~~~dai~~a~l~~l~~~~ 499 (952)
....-+..-+|=|+||.++|.+|.
T Consensus 50 -~~G~G~sKK~Aeq~AA~~al~~L~ 73 (76)
T 3adj_A 50 -TGAATRTKKDAEISAGRTALLAIQ 73 (76)
T ss_dssp -ECCCBSSHHHHHHHHHHHHHHHHH
T ss_pred -EEeccCCHHHHHHHHHHHHHHHHh
Confidence 122335566899999999999885
No 418
>3goh_A Alcohol dehydrogenase, zinc-containing; NP_718042.1, alcohol dehydrogenase superfamily protein, ALCO dehydrogenase groes-like domain; 1.55A {Shewanella oneidensis}
Probab=55.58 E-value=12 Score=39.41 Aligned_cols=47 Identities=23% Similarity=0.220 Sum_probs=37.2
Q ss_pred HHhhcCCCCEEEEEcCc-cchHHHHHhcCCCCCceEEEEeCChHHHHHHHH
Q 002218 707 QHIKESCATTLVDFGCG-SGSLLDSLLDYPTALEKIVGVDISQKSLSRAAK 756 (952)
Q Consensus 707 dlL~~~k~krVLDIGCG-eG~ll~~LAr~g~~~~qVVGVDISeemLe~Ark 756 (952)
+.....++.+||=+|+| .|.++..+++..+ .+|+++| +++-++.+++
T Consensus 136 ~~~~~~~g~~VlV~GaG~vG~~a~qlak~~G--a~Vi~~~-~~~~~~~~~~ 183 (315)
T 3goh_A 136 EKIPLTKQREVLIVGFGAVNNLLTQMLNNAG--YVVDLVS-ASLSQALAAK 183 (315)
T ss_dssp TTSCCCSCCEEEEECCSHHHHHHHHHHHHHT--CEEEEEC-SSCCHHHHHH
T ss_pred hhcCCCCCCEEEEECCCHHHHHHHHHHHHcC--CEEEEEE-ChhhHHHHHH
Confidence 44555678999999997 4888888887643 6999999 9988888865
No 419
>2l2n_A Hyponastic leave 1; DSRBD, miRNA, RNA binding protein, plant protein; NMR {Arabidopsis thaliana}
Probab=55.21 E-value=11 Score=34.65 Aligned_cols=70 Identities=13% Similarity=0.118 Sum_probs=48.0
Q ss_pred CChhhHHHhhhhhcccCcceeccccCCccccccchhhhhhhhhcccccccccccCCCcccCCCceeEEEEEeeccCCccc
Q 002218 393 SFPREMLFMFCRQHWLSEPVFSTCSNSLKESSESSRFYEKSAALESAETGKECTSGGGTAASDNVRCEVKIFSKSRDPIL 472 (952)
Q Consensus 393 ~~pr~~l~~fc~~~~l~ep~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~c~v~~~s~~~~~~~ 472 (952)
.-|+..|-.+|..+++..|.|... .. |......|.|+|.|-.+
T Consensus 17 ~d~Kt~LqE~~Q~~~~~~P~Y~~~-----------------------------~~--Gp~H~~~F~~~V~v~g~------ 59 (103)
T 2l2n_A 17 YVFKSRLQEYAQKYKLPTPVYEIV-----------------------------KE--GPSHKSLFQSTVILDGV------ 59 (103)
T ss_dssp --CTTHHHHHHHHTTCCCCEEEEE-----------------------------EE--SCSSSCEEEEEEEETTE------
T ss_pred CCHHHHHHHHHHHcCCCCCeEEEE-----------------------------eE--cCCCCCeEEEEEEECCE------
Confidence 357889999999999999998765 01 22223349999988532
Q ss_pred ccCchhhhhhhhhhHhhhhhHHHHHHH
Q 002218 473 ECSPKEFYKKQNESIENASLKVLSWLN 499 (952)
Q Consensus 473 ~~~~~~~~~~~~dai~~a~l~~l~~~~ 499 (952)
.+....-+++..+|=|+||.++|.+|.
T Consensus 60 ~~~~G~G~~SKK~Aeq~AA~~AL~~L~ 86 (103)
T 2l2n_A 60 RYNSLPGFFNRKAAEQSAAEVALRELA 86 (103)
T ss_dssp EEECCSCBSSHHHHHHHHHHHHHHHHH
T ss_pred EEEEeecCCCHHHHHHHHHHHHHHHHh
Confidence 122222225667899999999999986
No 420
>3ggo_A Prephenate dehydrogenase; TYRA, HPP, NADH, alpha-beta, oxidoreductase; HET: NAI ENO; 2.15A {Aquifex aeolicus} PDB: 3ggg_D* 3ggp_A*
Probab=54.94 E-value=39 Score=36.15 Aligned_cols=93 Identities=18% Similarity=0.122 Sum_probs=56.4
Q ss_pred CCEEEEEcCcc--chHHHHHhcCCCCCceEEEEeCChHHHHHHHHHHhhhhhcccccCCCCCCCccEEEEEcCccccCCC
Q 002218 714 ATTLVDFGCGS--GSLLDSLLDYPTALEKIVGVDISQKSLSRAAKIIHSKLSKKLDAAVPCTDVKSAVLFDGSITVFDSR 791 (952)
Q Consensus 714 ~krVLDIGCGe--G~ll~~LAr~g~~~~qVVGVDISeemLe~ArkrLsa~la~~~~~l~Pr~~~~nVtf~qGDa~dLpf~ 791 (952)
.++|.=||+|. +.++..|++.| ...+|+++|.+++.++.+.+. +. +.-...+..++ .
T Consensus 33 ~~kI~IIG~G~mG~slA~~l~~~G-~~~~V~~~dr~~~~~~~a~~~----------------G~--~~~~~~~~~~~--~ 91 (314)
T 3ggo_A 33 MQNVLIVGVGFMGGSFAKSLRRSG-FKGKIYGYDINPESISKAVDL----------------GI--IDEGTTSIAKV--E 91 (314)
T ss_dssp CSEEEEESCSHHHHHHHHHHHHTT-CCSEEEEECSCHHHHHHHHHT----------------TS--CSEEESCTTGG--G
T ss_pred CCEEEEEeeCHHHHHHHHHHHhCC-CCCEEEEEECCHHHHHHHHHC----------------CC--cchhcCCHHHH--h
Confidence 36899999984 44666777776 113899999999888777531 11 00112233220 1
Q ss_pred CCCccEEEEccccccCChhHHHHHHHHHHHccCCCEEEEEe
Q 002218 792 LHGFDIGTCLEVIEHMEEDEASQFGNIVLSSFRPRILIVST 832 (952)
Q Consensus 792 d~sFDVVVcieVIEHL~dD~l~~L~eeI~RvLKPG~LIIST 832 (952)
....|+|+.. +++.....+.+++...++|+.+|+.+
T Consensus 92 ~~~aDvVila-----vp~~~~~~vl~~l~~~l~~~~iv~d~ 127 (314)
T 3ggo_A 92 DFSPDFVMLS-----SPVRTFREIAKKLSYILSEDATVTDQ 127 (314)
T ss_dssp GGCCSEEEEC-----SCGGGHHHHHHHHHHHSCTTCEEEEC
T ss_pred hccCCEEEEe-----CCHHHHHHHHHHHhhccCCCcEEEEC
Confidence 2457888754 34333444456788889999555543
No 421
>1fd9_A Protein (macrophage infectivity potentiator prote; FKBP domain, long alpha helix, dimerisation VIA helical INTE isomerase; 2.41A {Legionella pneumophila} SCOP: d.26.1.1 PDB: 2uz5_A 2vcd_A*
Probab=54.62 E-value=15 Score=37.96 Aligned_cols=90 Identities=19% Similarity=0.322 Sum_probs=62.3
Q ss_pred CCccCCCCceeEEEEEEEEeecccchhhhhccc----cceEEEeccCccchhhhhhhhhccccccceecccCCchhhhhh
Q 002218 577 SGIYPSNGCLSFISYSVSLVIEGETMKELLESR----EEFEFEMGTGAVIPQVEVVTAQMSVGQSACFCKELPPQELILA 652 (952)
Q Consensus 577 ~~~~p~~gs~~~i~y~~~l~~~~~~~~~~~e~~----~~~~fe~g~~a~~~~l~~v~~q~sv~q~~~~~~~l~~~~l~lA 652 (952)
+|-.|..|+.|.|.|...|. +|+ .+++. ..++|.+ |.+++-++..+..|.+|....|. +||..-+=.
T Consensus 117 ~G~~p~~gD~V~V~Y~g~l~-dG~----vfdss~~~g~p~~f~l--g~vI~G~eeaL~gMk~Gek~~v~--IP~~laYG~ 187 (213)
T 1fd9_A 117 NGVKPGKSDTVTVEYTGRLI-DGT----VFDSTEKTGKPATFQV--SQVIPGWTEALQLMPAGSTWEIY--VPSGLAYGP 187 (213)
T ss_dssp CSCCCCTTCEEEEEEEEEET-TSC----EEEEHHHHCSCEEEEG--GGSCHHHHHHHTTCCTTCEEEEE--ECGGGTTTT
T ss_pred CCccCCCCCEEEEEEEEEEC-CCC----EEeeccccCCCEEEEc--CchhhHHHHHHcCCCCCCEEEEE--ECchhccCc
Confidence 57789999999999999985 554 34433 5688888 58999999999999999998877 555433221
Q ss_pred hccCcccchhcccccccccceeeeecccC
Q 002218 653 AADDSARTFSLLSSRACCLEYHITLLRVT 681 (952)
Q Consensus 653 a~~~~~~DiSlLs~d~~~LEyyI~LL~v~ 681 (952)
... . ..++-... +.|.|.++.+.
T Consensus 188 ~g~--~---~~Ipp~st-LiF~VeLl~v~ 210 (213)
T 1fd9_A 188 RSV--G---GPIGPNET-LIFKIHLISVK 210 (213)
T ss_dssp CCC--S---SSCCTTCC-EEEEEEEEEEE
T ss_pred cCC--C---CCCCCCCe-EEEEEEEEEEE
Confidence 110 0 12334444 77777776543
No 422
>3adl_A RISC-loading complex subunit tarbp2; TRBP2, miRNA processing, gene regulation-RNA complex; 2.20A {Homo sapiens}
Probab=54.21 E-value=12 Score=33.54 Aligned_cols=76 Identities=18% Similarity=0.098 Sum_probs=53.1
Q ss_pred eccccCCCChhhHHHhhhhhcccCcceeccccCCccccccchhhhhhhhhcccccccccccCCCcccCCCceeEEEEEee
Q 002218 386 TRTNWRGSFPREMLFMFCRQHWLSEPVFSTCSNSLKESSESSRFYEKSAALESAETGKECTSGGGTAASDNVRCEVKIFS 465 (952)
Q Consensus 386 ~~~~w~g~~pr~~l~~fc~~~~l~ep~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~c~v~~~s 465 (952)
+--.|...-|+..|-.+|....+..|.|.... .. |..-...|.|+|.|-.
T Consensus 8 ~~~~~~~~d~Ks~LqE~~Q~~~~~~P~Y~~~~----------------------------~~--Gp~H~~~F~~~v~v~g 57 (88)
T 3adl_A 8 SGLVPRGSHEVGALQELVVQKGWRLPEYTVTQ----------------------------ES--GPAHRKEFTMTCRVER 57 (88)
T ss_dssp -CCCCTTCCHHHHHHHHHHHTTCCCCEEEEEE----------------------------EE--SCTTSCEEEEEEEETT
T ss_pred cCCCCCCCCHHHHHHHHHHHcCCCCCEEEEEE----------------------------eE--CCCCCCeEEEEEEECC
Confidence 33467778899999999999999999998750 01 2222334999999853
Q ss_pred ccCCcccccCchhhhhhhhhhHhhhhhHHHHHHH
Q 002218 466 KSRDPILECSPKEFYKKQNESIENASLKVLSWLN 499 (952)
Q Consensus 466 ~~~~~~~~~~~~~~~~~~~dai~~a~l~~l~~~~ 499 (952)
+ + . ...=+..-+|=|+||.++|..|.
T Consensus 58 ~----~--~--~G~G~SKK~Aeq~AA~~AL~~L~ 83 (88)
T 3adl_A 58 F----I--E--IGSGTSKKLAKRNAAAKMLLRVH 83 (88)
T ss_dssp E----E--E--EEEESSHHHHHHHHHHHHHHHHH
T ss_pred E----E--E--EEeeCCHHHHHHHHHHHHHHHHH
Confidence 1 1 1 22234445899999999999885
No 423
>1uil_A Double-stranded RNA-binding motif; structural genomics, DSRM, riken structural genomics/proteomics initiative, RSGI RNA binding protein; NMR {Mus musculus} SCOP: d.50.1.1 PDB: 2rs7_A
Probab=53.66 E-value=8.5 Score=36.09 Aligned_cols=87 Identities=11% Similarity=0.182 Sum_probs=57.8
Q ss_pred CCcceeeccccCCCChhhHHHhhhhhcccCcceeccccCCccccccchhhhhhhhhcccccccccccCCCcccCCCceeE
Q 002218 380 LPMAFTTRTNWRGSFPREMLFMFCRQHWLSEPVFSTCSNSLKESSESSRFYEKSAALESAETGKECTSGGGTAASDNVRC 459 (952)
Q Consensus 380 lp~~~t~~~~w~g~~pr~~l~~fc~~~~l~ep~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~c 459 (952)
||....---+|...-|+..|-.+|..+++ .|.|... .. |......|.|
T Consensus 13 ~d~~~~~~~~~~~~d~Kt~LqE~~Qk~~~-~p~Y~~~-----------------------------~~--Gp~H~~~F~~ 60 (113)
T 1uil_A 13 VDLNAGLHGNWTLENAKARLNQYFQKEKI-QGEYKYT-----------------------------QV--GPDHNRSFIA 60 (113)
T ss_dssp CCSSHHHHCCCCHHHHHHHHHHHHHHSCC-CCCCEEE-----------------------------EE--SCSTTCEEEE
T ss_pred CCcCcccccccccCCHHHHHHHHHHHCCC-CCeEEEe-----------------------------eE--CCCCCCcEEE
Confidence 55555455678777899999999999998 8988722 11 1122334999
Q ss_pred EEEEeeccCCcccccCchhhhhhhhhhHhhhhhHHHHHHHh
Q 002218 460 EVKIFSKSRDPILECSPKEFYKKQNESIENASLKVLSWLNA 500 (952)
Q Consensus 460 ~v~~~s~~~~~~~~~~~~~~~~~~~dai~~a~l~~l~~~~~ 500 (952)
+|.|.-+..+-.+ -....-+..-+|=|+||.++|..|..
T Consensus 61 ~V~v~~~~~~~~~--~~~G~G~SKK~AEq~AA~~AL~~L~~ 99 (113)
T 1uil_A 61 EMTIYIKQLGRRI--FAREHGSNKKLAAQSCALSLVRQLYH 99 (113)
T ss_dssp EEEEEETTTTEEE--EEECCCSSHHHHHHHHHHHHHHHHHH
T ss_pred EEEEeeeccCCEE--EEEEeeCCHHHHHHHHHHHHHHHHHh
Confidence 9999533111111 11234466778999999999998864
No 424
>2db2_A KIAA0890 protein; DSRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=53.10 E-value=25 Score=33.46 Aligned_cols=92 Identities=25% Similarity=0.255 Sum_probs=54.8
Q ss_pred cCCCChHhHHHHhccCceeEEEeeeec-cccCCCCccccCCCCCceEEEeeec--CCceeeeccccccchHHHHHHHHHH
Q 002218 13 KMKLTPKAIIVQKFGRNAQFTVDEVQD-VVQNGCPGLAIPQKGPCLYRCSLQL--PEFSVVSETFKKKKDAEQSAAEKAL 89 (952)
Q Consensus 13 ~~~~tpka~~~q~~g~~~~y~~~ev~~-~~~~~~~~~~~~q~~~~~~~c~l~l--p~~~v~~~~~~~kkdaeq~aa~~al 89 (952)
+.-+-||.++|+-+..-.. ..-+++ ..|.-|- |+-.=.|+|.| |+=--+.+.=+||-|||.-||-.|+
T Consensus 14 ~~Fp~PKnLL~~ViqrA~~--ss~~kd~l~~~~t~-------g~k~K~~tl~l~WP~~mef~a~G~rK~eAE~kAAA~AC 84 (119)
T 2db2_A 14 KEFPQPKNLLNSVIGRALG--ISHAKDKLVYVHTN-------GPKKKKVTLHIKWPKSVEVEGYGSKKIDAERQAAAAAC 84 (119)
T ss_dssp TTCSCHHHHHHHHHHHHTT--HHHHHHHEEEEECC-------SSSSEEEEEEECSSSCEEEEEEESSHHHHHHHHHHHHH
T ss_pred HhCCChHHHHHHHHHHHHc--cCchhhheeEEeec-------CCceeEEEEEecCCCcEEEEeeccchHHHHHHHHHHHH
Confidence 3445899999988765421 011111 1111122 22334677765 7743333445899999999998887
Q ss_pred HH---cCCCCCCCCCChHHHHHHHHHH
Q 002218 90 EK---LGIDPSPNVPSAEEAWDKLIAS 113 (952)
Q Consensus 90 ~k---lg~~~~~~~~~~~e~~~~l~~~ 113 (952)
+| ||.=...+.|-.-.-.+.+..|
T Consensus 85 ~kLK~Lgll~p~n~pl~hakY~~~~~~ 111 (119)
T 2db2_A 85 QLFKGWGLLGPRNELFDAAKYRVLADR 111 (119)
T ss_dssp HHHHHHTSSCTTCCCCCHHHHHHHHHT
T ss_pred HHHHHcCccCCCCCcchHHHHHHHHHh
Confidence 65 7886666777555555555554
No 425
>3ps9_A TRNA 5-methylaminomethyl-2-thiouridine biosynthes bifunctional protein MNMC; rossmann fold, oxidase, methyl transferase, FAD; HET: FAD SAM; 2.54A {Escherichia coli} PDB: 3awi_A*
Probab=53.00 E-value=39 Score=39.61 Aligned_cols=150 Identities=13% Similarity=0.055 Sum_probs=81.7
Q ss_pred ChhhhhhhhcCCc--hhHHHHHHHHHHH-h----h--cCCCCEEEEEcCccchHHHHHhcCC-----------CCCceEE
Q 002218 683 PPEDRMEQALFSP--PLSKQRVEYALQH-I----K--ESCATTLVDFGCGSGSLLDSLLDYP-----------TALEKIV 742 (952)
Q Consensus 683 p~EeRye~~~F~P--PL~~QR~efVldl-L----~--~~k~krVLDIGCGeG~ll~~LAr~g-----------~~~~qVV 742 (952)
+..+++...+|+. .+.+.|+-|+... | . ..+.-+|||+|-|+|.......+.. ...-+++
T Consensus 27 ~~s~~~~~~y~s~~~~~~e~~~vf~~~~~l~~~~~~~~~~~~~i~e~gfG~Gln~l~~~~~~~~~~~~~p~~~~~~l~~~ 106 (676)
T 3ps9_A 27 PVSRDFDDVYFSNDNGLEETRYVFLGGNQLEVRFPEHPHPLFVVAESGFGTGLNFLTLWQAFDQFREAHPQAQLQRLHFI 106 (676)
T ss_dssp CEETTTTEESSCTTTHHHHHHHHTTGGGTHHHHGGGCSSSEEEEEEECCTTSHHHHHHHHHHHHHHHHCTTSSCCEEEEE
T ss_pred ccCccCCCcccCCcCHHHhhHhhhhccCChhHHHHhCCCCceEEEEeCCchHHHHHHHHHHHHHhhhhCcCCCCceEEEE
Confidence 3345666666665 4667777666432 2 2 1233589999999999876543321 1124689
Q ss_pred EEeC---ChHHHHHHHHHHh-------hhhhcccccCCC------CCCCccEEEEEcCccccCCC-----CCCccEEEEc
Q 002218 743 GVDI---SQKSLSRAAKIIH-------SKLSKKLDAAVP------CTDVKSAVLFDGSITVFDSR-----LHGFDIGTCL 801 (952)
Q Consensus 743 GVDI---SeemLe~ArkrLs-------a~la~~~~~l~P------r~~~~nVtf~qGDa~dLpf~-----d~sFDVVVci 801 (952)
+++. +.+.+..+-.... +..+........ ..+...++++.||+.+.-.. ...||+++.-
T Consensus 107 s~E~~p~~~~~l~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~l~l~~gd~~~~l~~~~~~~~~~~d~~~~D 186 (676)
T 3ps9_A 107 SFEKFPLTRADLALAHQHWPELAPWAEQLQAQWPMPLPGCHRLLLDAGRVTLDLWFGDINELTSQLDDSLNQKVDAWFLD 186 (676)
T ss_dssp EEESSCCCHHHHHHHHTTCGGGHHHHHHHHHHCCCCCSEEEEEEEGGGTEEEEEEESCHHHHGGGBCGGGTTCEEEEEEC
T ss_pred EEeCCCCCHHHHHHHHHhChhhHHHHHHHHHhCcccCCCceEEEecCCcEEEEEecCCHHHHHHhcccccCCcccEEEEC
Confidence 9998 8887775432110 001000000000 01123577888998763221 3679999774
Q ss_pred cccccCChh-HHHHHHHHHHHccCCCEEEEEe
Q 002218 802 EVIEHMEED-EASQFGNIVLSSFRPRILIVST 832 (952)
Q Consensus 802 eVIEHL~dD-~l~~L~eeI~RvLKPG~LIIST 832 (952)
..--...++ --..+...|+++++||..+.+.
T Consensus 187 ~f~p~~np~~w~~~~~~~l~~~~~~g~~~~t~ 218 (676)
T 3ps9_A 187 GFAPAKNPDMWTQNLFNAMARLARPGGTLATF 218 (676)
T ss_dssp CSCGGGCGGGSCHHHHHHHHHHEEEEEEEEES
T ss_pred CCCCcCChhhhhHHHHHHHHHHhCCCCEEEec
Confidence 432222211 1134445799999999554443
No 426
>2dph_A Formaldehyde dismutase; dismutation of aldehydes, oxidoreductase; HET: NAD; 2.27A {Pseudomonas putida}
Probab=52.68 E-value=13 Score=40.58 Aligned_cols=48 Identities=10% Similarity=0.007 Sum_probs=38.0
Q ss_pred HHhhcCCCCEEEEEcCcc-chHHHHHhcCCCCCc-eEEEEeCChHHHHHHHH
Q 002218 707 QHIKESCATTLVDFGCGS-GSLLDSLLDYPTALE-KIVGVDISQKSLSRAAK 756 (952)
Q Consensus 707 dlL~~~k~krVLDIGCGe-G~ll~~LAr~g~~~~-qVVGVDISeemLe~Ark 756 (952)
+.....++.+||-+|||. |.++..+++..+ . +|+++|.+++.++.+++
T Consensus 179 ~~~~~~~g~~VlV~GaG~vG~~aiqlak~~G--a~~Vi~~~~~~~~~~~a~~ 228 (398)
T 2dph_A 179 VSAGVKPGSHVYIAGAGPVGRCAAAGARLLG--AACVIVGDQNPERLKLLSD 228 (398)
T ss_dssp HHTTCCTTCEEEEECCSHHHHHHHHHHHHHT--CSEEEEEESCHHHHHHHHT
T ss_pred HHcCCCCCCEEEEECCCHHHHHHHHHHHHcC--CCEEEEEcCCHHHHHHHHH
Confidence 445556788999999986 888888887532 5 89999999998888753
No 427
>2f1k_A Prephenate dehydrogenase; tyrosine synthesis, X-RA crystallography structure, oxidoreductase; HET: OMT NAP; 1.55A {Synechocystis SP} SCOP: a.100.1.12 c.2.1.6
Probab=52.07 E-value=67 Score=32.85 Aligned_cols=87 Identities=13% Similarity=0.120 Sum_probs=53.0
Q ss_pred EEEEEcCcc--chHHHHHhcCCCCCceEEEEeCChHHHHHHHHHHhhhhhcccccCCCCCCCccEEEEEcCccccCCCCC
Q 002218 716 TLVDFGCGS--GSLLDSLLDYPTALEKIVGVDISQKSLSRAAKIIHSKLSKKLDAAVPCTDVKSAVLFDGSITVFDSRLH 793 (952)
Q Consensus 716 rVLDIGCGe--G~ll~~LAr~g~~~~qVVGVDISeemLe~ArkrLsa~la~~~~~l~Pr~~~~nVtf~qGDa~dLpf~d~ 793 (952)
+|.=||||. +.++..|++.+ .+|+++|.+++.++.+.+. +... . ...+..+. .
T Consensus 2 ~i~iiG~G~~G~~~a~~l~~~g---~~V~~~~~~~~~~~~~~~~----------------g~~~-~-~~~~~~~~----~ 56 (279)
T 2f1k_A 2 KIGVVGLGLIGASLAGDLRRRG---HYLIGVSRQQSTCEKAVER----------------QLVD-E-AGQDLSLL----Q 56 (279)
T ss_dssp EEEEECCSHHHHHHHHHHHHTT---CEEEEECSCHHHHHHHHHT----------------TSCS-E-EESCGGGG----T
T ss_pred EEEEEcCcHHHHHHHHHHHHCC---CEEEEEECCHHHHHHHHhC----------------CCCc-c-ccCCHHHh----C
Confidence 677899985 33445666766 6899999999877765321 1100 1 12233322 4
Q ss_pred CccEEEEccccccCChhHHHHHHHHHHHccCCCEEEEEe
Q 002218 794 GFDIGTCLEVIEHMEEDEASQFGNIVLSSFRPRILIVST 832 (952)
Q Consensus 794 sFDVVVcieVIEHL~dD~l~~L~eeI~RvLKPG~LIIST 832 (952)
..|+|+.. +++.....+.+.+...++|+.+++++
T Consensus 57 ~~D~vi~a-----v~~~~~~~~~~~l~~~~~~~~~vv~~ 90 (279)
T 2f1k_A 57 TAKIIFLC-----TPIQLILPTLEKLIPHLSPTAIVTDV 90 (279)
T ss_dssp TCSEEEEC-----SCHHHHHHHHHHHGGGSCTTCEEEEC
T ss_pred CCCEEEEE-----CCHHHHHHHHHHHHhhCCCCCEEEEC
Confidence 67887764 34444445555678888999666665
No 428
>1whn_A Hypothetical protein riken cDNA 2310016K04; double-stranded RNA binding domain, DSRBD, DSRM, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.50.1.1
Probab=51.69 E-value=17 Score=34.84 Aligned_cols=81 Identities=17% Similarity=0.303 Sum_probs=56.8
Q ss_pred cCCcceeeccccCCCChhhHHHhhhhhcccCcceeccccCCccccccchhhhhhhhhcccccccccccCCCcccCCCcee
Q 002218 379 ELPMAFTTRTNWRGSFPREMLFMFCRQHWLSEPVFSTCSNSLKESSESSRFYEKSAALESAETGKECTSGGGTAASDNVR 458 (952)
Q Consensus 379 ~lp~~~t~~~~w~g~~pr~~l~~fc~~~~l~ep~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~ 458 (952)
+.+..|..+..+...-|..+|-.+|..+.+..|.|.... . .....|.
T Consensus 12 ~~~~~~~r~~~~~~~d~Kt~LQE~~Qk~~~~~P~Y~~v~-----------------------------~----~H~~~F~ 58 (128)
T 1whn_A 12 KMAIRFDRRAYPPQITPKMCLLEWCRREKLPQPVYETVQ-----------------------------R----TIDRMFC 58 (128)
T ss_dssp EECCCCCGGGSCTTCCHHHHHHHHHHHTTCCCCCCCEEE-----------------------------C----SSSCCEE
T ss_pred eeehhhhhhhcccCCCHHHHHHHHHHHcCCCCCeEEEEe-----------------------------e----cCCCcEE
Confidence 344445445555667899999999999999999987761 0 1123399
Q ss_pred EEEEEeeccCCcccccCchhhh-hhhhhhHhhhhhHHHHHHH
Q 002218 459 CEVKIFSKSRDPILECSPKEFY-KKQNESIENASLKVLSWLN 499 (952)
Q Consensus 459 c~v~~~s~~~~~~~~~~~~~~~-~~~~dai~~a~l~~l~~~~ 499 (952)
|+|.|-.+. + ....- +..-+|=|+||.++|.+|.
T Consensus 59 v~V~v~g~~------~-g~G~G~~SKK~AEQ~AA~~AL~~L~ 93 (128)
T 1whn_A 59 SVVTVAEQK------Y-QSTLWDKSKKLAEQTAAIVCLRSQG 93 (128)
T ss_dssp EEEEETTEE------E-EESSCBSSHHHHHHHHHHHHHHHHT
T ss_pred EEEEECCEE------E-EEEeccCCHHHHHHHHHHHHHHHHh
Confidence 999884321 2 12334 6777899999999999984
No 429
>4g65_A TRK system potassium uptake protein TRKA; structural genomics, center for structural genomics of infec diseases, csgid, niaid; HET: MSE; 2.09A {Vibrio vulnificus}
Probab=51.54 E-value=33 Score=38.90 Aligned_cols=99 Identities=18% Similarity=0.192 Sum_probs=63.6
Q ss_pred CCCEEEEEcCcc-chHH-HHHhcCCCCCceEEEEeCChHHHHHHHHHHhhhhhcccccCCCCCCCccEEEEEcCccccCC
Q 002218 713 CATTLVDFGCGS-GSLL-DSLLDYPTALEKIVGVDISQKSLSRAAKIIHSKLSKKLDAAVPCTDVKSAVLFDGSITVFDS 790 (952)
Q Consensus 713 k~krVLDIGCGe-G~ll-~~LAr~g~~~~qVVGVDISeemLe~ArkrLsa~la~~~~~l~Pr~~~~nVtf~qGDa~dLpf 790 (952)
..++|+=+|||. |..+ ..|...+ ..|+.||.+++.++.+.+++ .+..++||+.+...
T Consensus 2 ~~M~iiI~G~G~vG~~la~~L~~~~---~~v~vId~d~~~~~~~~~~~------------------~~~~i~Gd~~~~~~ 60 (461)
T 4g65_A 2 NAMKIIILGAGQVGGTLAENLVGEN---NDITIVDKDGDRLRELQDKY------------------DLRVVNGHASHPDV 60 (461)
T ss_dssp CCEEEEEECCSHHHHHHHHHTCSTT---EEEEEEESCHHHHHHHHHHS------------------SCEEEESCTTCHHH
T ss_pred CcCEEEEECCCHHHHHHHHHHHHCC---CCEEEEECCHHHHHHHHHhc------------------CcEEEEEcCCCHHH
Confidence 356888888884 4333 4444555 89999999999998775542 56788999987543
Q ss_pred ----CCCCccEEEEccccccCChhHHHHHHHHHHHccCCC-EEEEEecCCch
Q 002218 791 ----RLHGFDIGTCLEVIEHMEEDEASQFGNIVLSSFRPR-ILIVSTPNYEY 837 (952)
Q Consensus 791 ----~d~sFDVVVcieVIEHL~dD~l~~L~eeI~RvLKPG-~LIISTPN~ef 837 (952)
.-...|++++.- .+|+...+.-.+++-+.|. ..+.-.-+.+|
T Consensus 61 L~~Agi~~ad~~ia~t-----~~De~Nl~~~~~Ak~~~~~~~~iar~~~~~~ 107 (461)
T 4g65_A 61 LHEAGAQDADMLVAVT-----NTDETNMAACQVAFTLFNTPNRIARIRSPQY 107 (461)
T ss_dssp HHHHTTTTCSEEEECC-----SCHHHHHHHHHHHHHHHCCSSEEEECCCHHH
T ss_pred HHhcCCCcCCEEEEEc-----CChHHHHHHHHHHHHhcCCccceeEeccchh
Confidence 245789887632 2355555555566666565 44444444333
No 430
>1jvw_A Macrophage infectivity potentiator; chagas disease, X-RAY rotamase, isomeras; 1.70A {Trypanosoma cruzi} SCOP: d.26.1.1
Probab=51.37 E-value=14 Score=36.75 Aligned_cols=92 Identities=17% Similarity=0.227 Sum_probs=64.3
Q ss_pred CCcc-CCCCceeEEEEEEEEeecccchhhhhccc----cceEEEeccCccchhhhhhhhhccccccceecccCCchhhhh
Q 002218 577 SGIY-PSNGCLSFISYSVSLVIEGETMKELLESR----EEFEFEMGTGAVIPQVEVVTAQMSVGQSACFCKELPPQELIL 651 (952)
Q Consensus 577 ~~~~-p~~gs~~~i~y~~~l~~~~~~~~~~~e~~----~~~~fe~g~~a~~~~l~~v~~q~sv~q~~~~~~~l~~~~l~l 651 (952)
+|-- |..|..|.|.|...|. +|+ .+++. ..++|.+ |.+++-++..+..|.+|..+.|. +||..-+=
T Consensus 48 ~G~~~~~~gd~V~v~Y~g~l~-dG~----~fdss~~~g~p~~f~l--g~vI~G~eeaL~gMk~Ge~~~~~--Ip~~laYG 118 (167)
T 1jvw_A 48 SGKRAPAIDDKCEVHYTGRLR-DGT----VFDSSRERGKPTTFRP--NEVIKGWTEALQLMREGDRWRLF--IPYDLAYG 118 (167)
T ss_dssp CCSBCCCTTCCEEEEEEEECT-TSC----EEEEHHHHTSCEEECG--GGSCHHHHHHHTTCCTTCEEEEE--ECGGGTTT
T ss_pred CCCcCCCCCCEEEEEEEEEEC-CCC----EEeeccccCCCEEEEe--CchhHHHHHHHcCCCCCCEEEEE--ECchhhCC
Confidence 4666 9999999999999873 443 44443 5688877 58999999999999999999886 55543322
Q ss_pred hhccCcccchhcccccccccceeeeecccCCC
Q 002218 652 AAADDSARTFSLLSSRACCLEYHITLLRVTEP 683 (952)
Q Consensus 652 Aa~~~~~~DiSlLs~d~~~LEyyI~LL~v~ep 683 (952)
.... -..++-... +.|.|.++.+..+
T Consensus 119 ~~g~-----~~~Ipp~s~-LiF~VeL~~i~~~ 144 (167)
T 1jvw_A 119 VTGG-----GGMIPPYSP-LEFDVELISIKDG 144 (167)
T ss_dssp TTCS-----SSSSCTTCC-EEEEEEEEEEGGG
T ss_pred CCCC-----CCCcCCCCe-EEEEEEEEEEEcC
Confidence 1111 012344444 8888888877643
No 431
>2dix_A Interferon-inducible double stranded RNA- dependent protein kinase activator A; structure genomics, DSRM domain, hypothetical protein PRKRA; NMR {Homo sapiens} SCOP: d.50.1.1
Probab=51.04 E-value=16 Score=32.16 Aligned_cols=69 Identities=14% Similarity=0.117 Sum_probs=48.2
Q ss_pred CCChhhHHHhhhhhcccCcceeccccCCccccccchhhhhhhhhcccccccccccCCCcccCCCceeEEEEEeeccCCcc
Q 002218 392 GSFPREMLFMFCRQHWLSEPVFSTCSNSLKESSESSRFYEKSAALESAETGKECTSGGGTAASDNVRCEVKIFSKSRDPI 471 (952)
Q Consensus 392 g~~pr~~l~~fc~~~~l~ep~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~c~v~~~s~~~~~~ 471 (952)
+.-|...|-.+|..+. ..|.|... . .. |......|.|+|.|- + +
T Consensus 7 ~~d~Ks~LqE~~q~~~-~~p~Y~~~--~--------------------------~~--Gp~h~~~F~~~v~v~----~-~ 50 (84)
T 2dix_A 7 GKTPIQVLHEYGMKTK-NIPVYECE--R--------------------------SD--VQIHVPTFTFRVTVG----D-I 50 (84)
T ss_dssp CCCHHHHHHHHHHHTT-CCCEEEEE--E--------------------------EE--CSSSSCEEEEEEEET----T-E
T ss_pred CCCHHHHHHHHHHHcC-CCCeEEEE--E--------------------------eE--CCCCCCeEEEEEEEC----C-E
Confidence 3468899999998887 57888764 0 01 222233499999983 2 1
Q ss_pred cccCchhhhhhhhhhHhhhhhHHHHHHH
Q 002218 472 LECSPKEFYKKQNESIENASLKVLSWLN 499 (952)
Q Consensus 472 ~~~~~~~~~~~~~dai~~a~l~~l~~~~ 499 (952)
+ ....-+..-+|=|+||.++|..|.
T Consensus 51 ~---~~G~G~SKK~Aeq~AA~~aL~~L~ 75 (84)
T 2dix_A 51 T---CTGEGTSKKLAKHRAAEAAINILK 75 (84)
T ss_dssp E---EEECSSCTTHHHHHHHHHHHHHHH
T ss_pred E---EEeeeCCHHHHHHHHHHHHHHHHh
Confidence 1 334456777899999999999885
No 432
>3tos_A CALS11; methyltransferase, calicheamicin, structural genomic protein structure initiative, PSI, natPro; HET: MSE SAH GLU; 1.55A {Micromonospora echinospora} PDB: 4gf5_A*
Probab=50.24 E-value=1.2e+02 Score=32.22 Aligned_cols=110 Identities=12% Similarity=0.170 Sum_probs=61.6
Q ss_pred CCCCEEEEEcCccchHHHHHhcC------CCCCceEEEEe-----CChH-------------------HHHHHHHHHhhh
Q 002218 712 SCATTLVDFGCGSGSLLDSLLDY------PTALEKIVGVD-----ISQK-------------------SLSRAAKIIHSK 761 (952)
Q Consensus 712 ~k~krVLDIGCGeG~ll~~LAr~------g~~~~qVVGVD-----ISee-------------------mLe~ArkrLsa~ 761 (952)
.-+..|+|+||-.|.-+..++.. .++..+|+|+| .... ..+..++.+...
T Consensus 68 ~vpG~ivE~GV~rG~S~~~~a~~~~~l~~~~~~r~v~~fDTFeG~P~~~~~D~~~~~~~~G~~~~~~~~~~~l~~~l~~~ 147 (257)
T 3tos_A 68 DVPGVIMEFGVRFGRHLGTFAALRGVYEPYNPLRRIVGFDTFTGFPDVNDVDRVGPTAYQGRFAVPGGYPAYLKEVLDAH 147 (257)
T ss_dssp TSCSEEEEECCTTCHHHHHHHHHHHHHCTTCTTCCEEEEECSSCCCSCCGGGTTSTTCSTTTTCCCTTHHHHHHHHHHHH
T ss_pred CCCCeEEEEecccCHHHHHHHHHHHHhcccCCCCEEEEEECCCCCCCCccccccccccccCcccccchhHHHHHHHHHHH
Confidence 35679999999999988775531 12347899999 3211 001111111000
Q ss_pred hhcccccCCCCCC-CccEEEEEcCcccc-C-----CCCCCccEEEEccccccCChhHHHHHHHHHHHccCCCEEEE
Q 002218 762 LSKKLDAAVPCTD-VKSAVLFDGSITVF-D-----SRLHGFDIGTCLEVIEHMEEDEASQFGNIVLSSFRPRILIV 830 (952)
Q Consensus 762 la~~~~~l~Pr~~-~~nVtf~qGDa~dL-p-----f~d~sFDVVVcieVIEHL~dD~l~~L~eeI~RvLKPG~LII 830 (952)
+.. ..-.. ..+|+++.|++.+. + .+...||+|..=. +........+ +.+...|+||.+|+
T Consensus 148 -~~~----~~~g~~~~~i~li~G~~~dTL~~~l~~~~~~~~dlv~ID~---D~Y~~t~~~l-e~~~p~l~~GGvIv 214 (257)
T 3tos_A 148 -ECS----DFFGHVTQRSVLVEGDVRETVPRYLAENPQTVIALAYFDL---DLYEPTKAVL-EAIRPYLTKGSIVA 214 (257)
T ss_dssp -HTT----STTTTSCCSEEEEESCHHHHHHHHHHHCTTCCEEEEEECC---CCHHHHHHHH-HHHGGGEEEEEEEE
T ss_pred -hhh----hhcCCCCCcEEEEEecHHHHHHHHHHhCCCCceEEEEEcC---cccchHHHHH-HHHHHHhCCCcEEE
Confidence 000 00012 26899999999763 2 1234699886643 2232333444 46889999995544
No 433
>1f8f_A Benzyl alcohol dehydrogenase; rossmann fold, oxidoreductase; HET: NAD; 2.20A {Acinetobacter calcoaceticus} SCOP: b.35.1.2 c.2.1.1
Probab=50.21 E-value=16 Score=39.28 Aligned_cols=49 Identities=24% Similarity=0.289 Sum_probs=37.7
Q ss_pred HHhhcCCCCEEEEEcCcc-chHHHHHhcCCCCCceEEEEeCChHHHHHHHH
Q 002218 707 QHIKESCATTLVDFGCGS-GSLLDSLLDYPTALEKIVGVDISQKSLSRAAK 756 (952)
Q Consensus 707 dlL~~~k~krVLDIGCGe-G~ll~~LAr~g~~~~qVVGVDISeemLe~Ark 756 (952)
+.....++.+||-+|+|. |.++..+++..+ ..+|+++|.+++.++.+++
T Consensus 184 ~~~~~~~g~~VlV~GaG~vG~~a~qlak~~G-a~~Vi~~~~~~~~~~~a~~ 233 (371)
T 1f8f_A 184 NALKVTPASSFVTWGAGAVGLSALLAAKVCG-ASIIIAVDIVESRLELAKQ 233 (371)
T ss_dssp TTTCCCTTCEEEEESCSHHHHHHHHHHHHHT-CSEEEEEESCHHHHHHHHH
T ss_pred hccCCCCCCEEEEECCCHHHHHHHHHHHHcC-CCeEEEECCCHHHHHHHHH
Confidence 444556778999999986 888888887532 1379999999999988864
No 434
>1uhz_A Staufen (RNA binding protein) homolog 2; DSRM, staufen homolog 2, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.50.1.1
Probab=50.05 E-value=11 Score=33.72 Aligned_cols=70 Identities=19% Similarity=0.109 Sum_probs=49.1
Q ss_pred CCChhhHHHhhhhhcccCcceeccccCCccccccchhhhhhhhhcccccccccccCCCcccCCCceeEEEEEeeccCCcc
Q 002218 392 GSFPREMLFMFCRQHWLSEPVFSTCSNSLKESSESSRFYEKSAALESAETGKECTSGGGTAASDNVRCEVKIFSKSRDPI 471 (952)
Q Consensus 392 g~~pr~~l~~fc~~~~l~ep~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~c~v~~~s~~~~~~ 471 (952)
|--|...|-.+|..+++..|.|.... .. |-.....|.|+|.|-. .+
T Consensus 5 ~~d~Kt~LqE~~Q~~~~~~P~Y~~~~----------------------------~~--Gp~H~~~F~~~v~v~g----~~ 50 (89)
T 1uhz_A 5 SSGPISRLAQIQQARKEKEPDYILLS----------------------------ER--GMPRRREFVMQVKVGN----EV 50 (89)
T ss_dssp SSCHHHHHHHHHHHTTSCCCEEEEEE----------------------------EE--SCSTTCEEEEEEEETT----EE
T ss_pred CCCHHHHHHHHHHHhCCCCCeEEEEE----------------------------eE--CCCCCCeEEEEEEECC----EE
Confidence 34588999999999999999997650 01 2222234999999842 11
Q ss_pred cccCchhhhhhhhhhHhhhhhHHHHHHH
Q 002218 472 LECSPKEFYKKQNESIENASLKVLSWLN 499 (952)
Q Consensus 472 ~~~~~~~~~~~~~dai~~a~l~~l~~~~ 499 (952)
....=+...+|=|+||.++|.+|.
T Consensus 51 ----~~G~G~SKK~Aeq~AA~~AL~~L~ 74 (89)
T 1uhz_A 51 ----ATGTGPNKKIAKKNAAEAMLLQLG 74 (89)
T ss_dssp ----EEEEESSHHHHHHHHHHHHHHHHT
T ss_pred ----EEEeeCCHHHHHHHHHHHHHHHHh
Confidence 223335567899999999999984
No 435
>3ado_A Lambda-crystallin; L-gulonate 3-dehydrogenase, structural genomics, riken struc genomics/proteomics initiative, RSGI, acetylation; 1.70A {Oryctolagus cuniculus} PDB: 3adp_A* 3f3s_A*
Probab=48.02 E-value=1.6e+02 Score=31.92 Aligned_cols=162 Identities=10% Similarity=-0.020 Sum_probs=84.4
Q ss_pred CCCEEEEEcCccch--HHHHHhcCCCCCceEEEEeCChHHHHHHHHHHhhhhhcccccCCCCC------CCccEEEEEcC
Q 002218 713 CATTLVDFGCGSGS--LLDSLLDYPTALEKIVGVDISQKSLSRAAKIIHSKLSKKLDAAVPCT------DVKSAVLFDGS 784 (952)
Q Consensus 713 k~krVLDIGCGeG~--ll~~LAr~g~~~~qVVGVDISeemLe~ArkrLsa~la~~~~~l~Pr~------~~~nVtf~qGD 784 (952)
...+|.=||+|.-. .+..++..| .+|+-+|++++.++.+.+++...+........-.. ...++++. .|
T Consensus 5 ~~~~VaViGaG~MG~giA~~~a~~G---~~V~l~D~~~~~l~~~~~~i~~~l~~~~~~g~~~~~~~~~~~l~~i~~~-~~ 80 (319)
T 3ado_A 5 AAGDVLIVGSGLVGRSWAMLFASGG---FRVKLYDIEPRQITGALENIRKEMKSLQQSGSLKGSLSAEEQLSLISSC-TN 80 (319)
T ss_dssp --CEEEEECCSHHHHHHHHHHHHTT---CCEEEECSCHHHHHHHHHHHHHHHHHHHHTTCCCSSSCHHHHHHTEEEE-CC
T ss_pred CCCeEEEECCcHHHHHHHHHHHhCC---CeEEEEECCHHHHHHHHHHHHHHHHHHHHcCCCCCccCHHHHHhhcccc-cc
Confidence 35689999999532 445566777 89999999999999888776554432211100000 01133332 23
Q ss_pred ccccCCCCCCccEEEEccccccCChhHHHHHHHHHHHccCCCEEEEE-ecCCchhHHHHhhccCccCCCCcchhhhcccc
Q 002218 785 ITVFDSRLHGFDIGTCLEVIEHMEEDEASQFGNIVLSSFRPRILIVS-TPNYEYNAILQKSSSTIQEDDPDEKTQLQSCK 863 (952)
Q Consensus 785 a~dLpf~d~sFDVVVcieVIEHL~dD~l~~L~eeI~RvLKPG~LIIS-TPN~efN~lf~~L~~~ta~eYPde~~g~~~~~ 863 (952)
+.+ .....|+|+=. +.|.+. ..+.+.+++-++++|+.++-| |-...-..+.... ..|..-. ...
T Consensus 81 l~~---a~~~ad~ViEa-v~E~l~--iK~~lf~~l~~~~~~~aIlaSNTSsl~is~ia~~~------~~p~r~i---g~H 145 (319)
T 3ado_A 81 LAE---AVEGVVHIQEC-VPENLD--LKRKIFAQLDSIVDDRVVLSSSSSCLLPSKLFTGL------AHVKQCI---VAH 145 (319)
T ss_dssp HHH---HTTTEEEEEEC-CCSCHH--HHHHHHHHHHTTCCSSSEEEECCSSCCHHHHHTTC------TTGGGEE---EEE
T ss_pred hHh---HhccCcEEeec-cccHHH--HHHHHHHHHHHHhhhcceeehhhhhccchhhhhhc------cCCCcEE---Eec
Confidence 221 12345655421 333332 334555679999999844443 3222222222211 1111101 112
Q ss_pred ccCCCCc--------cccCHHHHHHHHHHHHHHcCcEE
Q 002218 864 FRNHDHK--------FEWTRDQFNCWATELAARHNYSV 893 (952)
Q Consensus 864 fRh~DHk--------FEWTReEFqsWae~La~q~GYsV 893 (952)
|-++-|. -.+|..+....+..++.+.|-..
T Consensus 146 ffNP~~~m~LVEiv~g~~Ts~~~~~~~~~~~~~~gk~p 183 (319)
T 3ado_A 146 PVNPPYYIPLVELVPHPETSPATVDRTHALMRKIGQSP 183 (319)
T ss_dssp ECSSTTTCCEEEEEECTTCCHHHHHHHHHHHHHTTCEE
T ss_pred CCCCccccchHHhcCCCCCcHHHHHHHHHHHHHhCCcc
Confidence 2233332 23787788888888888887553
No 436
>4e12_A Diketoreductase; oxidoreductase, NADH; HET: 1PE; 1.93A {Acinetobacter baylyi} PDB: 4dyd_A* 4e13_A*
Probab=47.26 E-value=27 Score=36.41 Aligned_cols=105 Identities=10% Similarity=0.037 Sum_probs=58.6
Q ss_pred CEEEEEcCcc--chHHHHHhcCCCCCceEEEEeCChHHHHHHHHHHhhhhhccccc---CCCC---CCCccEEEEEcCcc
Q 002218 715 TTLVDFGCGS--GSLLDSLLDYPTALEKIVGVDISQKSLSRAAKIIHSKLSKKLDA---AVPC---TDVKSAVLFDGSIT 786 (952)
Q Consensus 715 krVLDIGCGe--G~ll~~LAr~g~~~~qVVGVDISeemLe~ArkrLsa~la~~~~~---l~Pr---~~~~nVtf~qGDa~ 786 (952)
++|.=||+|. ..++..+++.| .+|+.+|.+++.++.+.+.+...+...... +.+. ....++.. ..|..
T Consensus 5 ~kV~VIGaG~mG~~iA~~la~~G---~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~~i~~-~~~~~ 80 (283)
T 4e12_A 5 TNVTVLGTGVLGSQIAFQTAFHG---FAVTAYDINTDALDAAKKRFEGLAAVYEKEVAGAADGAAQKALGGIRY-SDDLA 80 (283)
T ss_dssp CEEEEECCSHHHHHHHHHHHHTT---CEEEEECSSHHHHHHHHHHHHHHHHHHHHHSTTCTTTHHHHHHHHCEE-ESCHH
T ss_pred CEEEEECCCHHHHHHHHHHHhCC---CeEEEEeCCHHHHHHHHHHHHHHHHHHHHhcccCCHHHHHHHHcCeEE-eCCHH
Confidence 5788899985 23445667777 799999999999988876543221110000 0000 00012232 22322
Q ss_pred ccCCCCCCccEEEEccccccCChh--HHHHHHHHHHHccCCCEEEEE
Q 002218 787 VFDSRLHGFDIGTCLEVIEHMEED--EASQFGNIVLSSFRPRILIVS 831 (952)
Q Consensus 787 dLpf~d~sFDVVVcieVIEHL~dD--~l~~L~eeI~RvLKPG~LIIS 831 (952)
+ .....|+|+. .++++ ....+.+++...++|+.++++
T Consensus 81 ~---~~~~aDlVi~-----av~~~~~~~~~v~~~l~~~~~~~~il~s 119 (283)
T 4e12_A 81 Q---AVKDADLVIE-----AVPESLDLKRDIYTKLGELAPAKTIFAT 119 (283)
T ss_dssp H---HTTTCSEEEE-----CCCSCHHHHHHHHHHHHHHSCTTCEEEE
T ss_pred H---HhccCCEEEE-----eccCcHHHHHHHHHHHHhhCCCCcEEEE
Confidence 2 1245777754 44433 445555678899999965564
No 437
>1zcj_A Peroxisomal bifunctional enzyme; peroxisomal multifunctional enzyme type 1, L-bifunction enzyme, MFE-1, fatty acid beta oxidation; 1.90A {Rattus norvegicus}
Probab=46.57 E-value=1.1e+02 Score=34.68 Aligned_cols=106 Identities=19% Similarity=0.187 Sum_probs=58.1
Q ss_pred CEEEEEcCcc-c-hHHHHHhcCCCCCceEEEEeCChHHHHHHHHHHhhhhhccccc--CCCCC-CCccEEEEEcCccccC
Q 002218 715 TTLVDFGCGS-G-SLLDSLLDYPTALEKIVGVDISQKSLSRAAKIIHSKLSKKLDA--AVPCT-DVKSAVLFDGSITVFD 789 (952)
Q Consensus 715 krVLDIGCGe-G-~ll~~LAr~g~~~~qVVGVDISeemLe~ArkrLsa~la~~~~~--l~Pr~-~~~nVtf~qGDa~dLp 789 (952)
++|.=||+|. | .++..+++.| .+|+++|++++.++.+++.+...+...... ..+.. ......+ ..|...
T Consensus 38 ~kV~VIGaG~MG~~iA~~la~~G---~~V~l~D~~~~~~~~~~~~i~~~l~~~~~~g~~~~~~~~~~~~~i-~~~~~~-- 111 (463)
T 1zcj_A 38 SSVGVLGLGTMGRGIAISFARVG---ISVVAVESDPKQLDAAKKIITFTLEKEASRAHQNGQASAKPKLRF-SSSTKE-- 111 (463)
T ss_dssp CEEEEECCSHHHHHHHHHHHTTT---CEEEEECSSHHHHHHHHHHHHHHHHHHHHHHHHTTCCCCCCCEEE-ESCGGG--
T ss_pred CEEEEECcCHHHHHHHHHHHhCC---CeEEEEECCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhhh-cCCHHH--
Confidence 5799999996 3 3556677777 799999999999888766433211100000 00000 0111222 334322
Q ss_pred CCCCCccEEEEccccccCChhHHHHHHHHHHHccCCCEEEEE
Q 002218 790 SRLHGFDIGTCLEVIEHMEEDEASQFGNIVLSSFRPRILIVS 831 (952)
Q Consensus 790 f~d~sFDVVVcieVIEHL~dD~l~~L~eeI~RvLKPG~LIIS 831 (952)
....|+|+..- -+.+ +....+.+.+...++|+.++++
T Consensus 112 --~~~aDlVIeaV-pe~~--~~k~~v~~~l~~~~~~~~ii~s 148 (463)
T 1zcj_A 112 --LSTVDLVVEAV-FEDM--NLKKKVFAELSALCKPGAFLCT 148 (463)
T ss_dssp --GTTCSEEEECC-CSCH--HHHHHHHHHHHHHSCTTCEEEE
T ss_pred --HCCCCEEEEcC-CCCH--HHHHHHHHHHHhhCCCCeEEEe
Confidence 34678876642 2211 1223444568889999954444
No 438
>2cpn_A TAR RNA-binding protein 2; double-stranded RNA binding domain, DSRBD, DSRM., structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.50.1.1
Probab=45.25 E-value=14 Score=33.06 Aligned_cols=69 Identities=17% Similarity=0.117 Sum_probs=48.5
Q ss_pred CChhhHHHhhhhhcccCcceeccccCCccccccchhhhhhhhhcccccccccccCCCcccCCCceeEEEEEeeccCCccc
Q 002218 393 SFPREMLFMFCRQHWLSEPVFSTCSNSLKESSESSRFYEKSAALESAETGKECTSGGGTAASDNVRCEVKIFSKSRDPIL 472 (952)
Q Consensus 393 ~~pr~~l~~fc~~~~l~ep~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~c~v~~~s~~~~~~~ 472 (952)
.-|+.+|-.+|..+++..|.|.... .. |......|.|+|.|-.+ +
T Consensus 16 ~d~Kt~LqE~~Qk~~~~~P~Y~~~~----------------------------~~--Gp~h~~~F~~~v~i~g~----~- 60 (89)
T 2cpn_A 16 CNPVGALQELVVQKGWRLPEYTVTQ----------------------------ES--GPAHRKEFTMTCRVERF----I- 60 (89)
T ss_dssp CCHHHHHHHHHHHHTCCCCEEEEEE----------------------------EE--CCSSSCEEEEEEEETTE----E-
T ss_pred CCHHHHHHHHHHHcCCCCCeEEEEe----------------------------eE--CCCCCCeEEEEEEECCE----E-
Confidence 3578999999999999999987650 01 22223349999998531 1
Q ss_pred ccCchhhhhhhhhhHhhhhhHHHHHHH
Q 002218 473 ECSPKEFYKKQNESIENASLKVLSWLN 499 (952)
Q Consensus 473 ~~~~~~~~~~~~dai~~a~l~~l~~~~ 499 (952)
....=+..-+|=|+||.++|..|.
T Consensus 61 ---~~G~G~SKK~Aeq~AA~~AL~~L~ 84 (89)
T 2cpn_A 61 ---EIGSGTSKKLAKRNAAAKMLLRVS 84 (89)
T ss_dssp ---EEEEESSHHHHHHHHHHHHHHHHH
T ss_pred ---EEeeeCCHHHHHHHHHHHHHHHHH
Confidence 123335567899999999999884
No 439
>3oig_A Enoyl-[acyl-carrier-protein] reductase [NADH]; fatty acid synthesis, rossmann-like fold, enoyl-ACP reductas binding; HET: NAD IMJ; 1.25A {Bacillus subtilis} SCOP: c.2.1.2 PDB: 3oif_A* 2qio_A* 3oje_A 3ojf_A*
Probab=45.24 E-value=1.7e+02 Score=29.39 Aligned_cols=78 Identities=8% Similarity=0.032 Sum_probs=51.8
Q ss_pred CCCCEEEEEcCc--c--ch-HHHHHhcCCCCCceEEEEeCChHHHHHHHHHHhhhhhcccccCCCCCCCccEEEEEcCcc
Q 002218 712 SCATTLVDFGCG--S--GS-LLDSLLDYPTALEKIVGVDISQKSLSRAAKIIHSKLSKKLDAAVPCTDVKSAVLFDGSIT 786 (952)
Q Consensus 712 ~k~krVLDIGCG--e--G~-ll~~LAr~g~~~~qVVGVDISeemLe~ArkrLsa~la~~~~~l~Pr~~~~nVtf~qGDa~ 786 (952)
..++++|=.|++ . |. ++..|++.| .+|+.+|.++...+.+.+.... ....++.++.+|+.
T Consensus 5 l~~k~vlVTGasg~~GIG~~ia~~l~~~G---~~V~~~~r~~~~~~~~~~~~~~------------~~~~~~~~~~~D~~ 69 (266)
T 3oig_A 5 LEGRNIVVMGVANKRSIAWGIARSLHEAG---ARLIFTYAGERLEKSVHELAGT------------LDRNDSIILPCDVT 69 (266)
T ss_dssp CTTCEEEEECCCSTTSHHHHHHHHHHHTT---CEEEEEESSGGGHHHHHHHHHT------------SSSCCCEEEECCCS
T ss_pred cCCCEEEEEcCCCCCcHHHHHHHHHHHCC---CEEEEecCchHHHHHHHHHHHh------------cCCCCceEEeCCCC
Confidence 356889999976 3 33 557788888 7999999887665555443321 11226889999998
Q ss_pred ccCC----------CCCCccEEEEcccc
Q 002218 787 VFDS----------RLHGFDIGTCLEVI 804 (952)
Q Consensus 787 dLpf----------~d~sFDVVVcieVI 804 (952)
+... ..+..|+++..-.+
T Consensus 70 ~~~~v~~~~~~~~~~~g~id~li~~Ag~ 97 (266)
T 3oig_A 70 NDAEIETCFASIKEQVGVIHGIAHCIAF 97 (266)
T ss_dssp SSHHHHHHHHHHHHHHSCCCEEEECCCC
T ss_pred CHHHHHHHHHHHHHHhCCeeEEEEcccc
Confidence 7542 12468998886543
No 440
>3c24_A Putative oxidoreductase; YP_511008.1, structural genomics, center for structural genomics, JCSG, protein structure INI PSI-2; HET: MSE; 1.62A {Jannaschia SP}
Probab=44.47 E-value=89 Score=32.28 Aligned_cols=86 Identities=13% Similarity=0.253 Sum_probs=53.1
Q ss_pred CEEEEEcC-cc-c-hHHHHHhcCCCCCceEEEEeCChHHHHHHHHHHhhhhhcccccCCCCCCCccEEEEEcCccccCCC
Q 002218 715 TTLVDFGC-GS-G-SLLDSLLDYPTALEKIVGVDISQKSLSRAAKIIHSKLSKKLDAAVPCTDVKSAVLFDGSITVFDSR 791 (952)
Q Consensus 715 krVLDIGC-Ge-G-~ll~~LAr~g~~~~qVVGVDISeemLe~ArkrLsa~la~~~~~l~Pr~~~~nVtf~qGDa~dLpf~ 791 (952)
.+|.=||+ |. | .++..|++.+ .+|+++|.+++.++.+.+ . + +.. .+..+ .
T Consensus 12 m~I~iIG~tG~mG~~la~~l~~~g---~~V~~~~r~~~~~~~~~~-~---------------g---~~~--~~~~~---~ 64 (286)
T 3c24_A 12 KTVAILGAGGKMGARITRKIHDSA---HHLAAIEIAPEGRDRLQG-M---------------G---IPL--TDGDG---W 64 (286)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHSS---SEEEEECCSHHHHHHHHH-T---------------T---CCC--CCSSG---G
T ss_pred CEEEEECCCCHHHHHHHHHHHhCC---CEEEEEECCHHHHHHHHh-c---------------C---CCc--CCHHH---H
Confidence 48999999 84 3 3456677776 689999999887766543 1 1 111 12111 1
Q ss_pred CCCccEEEEccccccCChhHHHHHHHHHHHccCCCEEEEEe
Q 002218 792 LHGFDIGTCLEVIEHMEEDEASQFGNIVLSSFRPRILIVST 832 (952)
Q Consensus 792 d~sFDVVVcieVIEHL~dD~l~~L~eeI~RvLKPG~LIIST 832 (952)
....|+|+.. ++++....+.+.+...++|+.+++++
T Consensus 65 ~~~aDvVi~a-----v~~~~~~~v~~~l~~~l~~~~ivv~~ 100 (286)
T 3c24_A 65 IDEADVVVLA-----LPDNIIEKVAEDIVPRVRPGTIVLIL 100 (286)
T ss_dssp GGTCSEEEEC-----SCHHHHHHHHHHHGGGSCTTCEEEES
T ss_pred hcCCCEEEEc-----CCchHHHHHHHHHHHhCCCCCEEEEC
Confidence 2467888753 34444455556677788888666653
No 441
>1pl8_A Human sorbitol dehydrogenase; NAD, oxidoreductase; HET: NAD; 1.90A {Homo sapiens} SCOP: b.35.1.2 c.2.1.1 PDB: 1pl7_A 1pl6_A* 3qe3_A
Probab=44.36 E-value=31 Score=36.94 Aligned_cols=48 Identities=19% Similarity=0.211 Sum_probs=37.6
Q ss_pred HHhhcCCCCEEEEEcCcc-chHHHHHhcCCCCCc-eEEEEeCChHHHHHHHH
Q 002218 707 QHIKESCATTLVDFGCGS-GSLLDSLLDYPTALE-KIVGVDISQKSLSRAAK 756 (952)
Q Consensus 707 dlL~~~k~krVLDIGCGe-G~ll~~LAr~g~~~~-qVVGVDISeemLe~Ark 756 (952)
+.....++.+||-+|+|. |.++..+++..+ . +|+++|.+++-++.+++
T Consensus 165 ~~~~~~~g~~VlV~GaG~vG~~aiqlak~~G--a~~Vi~~~~~~~~~~~a~~ 214 (356)
T 1pl8_A 165 RRGGVTLGHKVLVCGAGPIGMVTLLVAKAMG--AAQVVVTDLSATRLSKAKE 214 (356)
T ss_dssp HHHTCCTTCEEEEECCSHHHHHHHHHHHHTT--CSEEEEEESCHHHHHHHHH
T ss_pred HhcCCCCCCEEEEECCCHHHHHHHHHHHHcC--CCEEEEECCCHHHHHHHHH
Confidence 444556788999999985 888888887542 5 89999999998888864
No 442
>2dpo_A L-gulonate 3-dehydrogenase; structural genomics, NPPSFA, national project on protein structural and functional analyses; 1.70A {Oryctolagus cuniculus} PDB: 2ep9_A* 3ado_A 3a97_A 3adp_A* 3f3s_A*
Probab=44.24 E-value=60 Score=35.03 Aligned_cols=106 Identities=12% Similarity=0.043 Sum_probs=59.3
Q ss_pred CCEEEEEcCcc--chHHHHHhcCCCCCceEEEEeCChHHHHHHHHHHhhhhhcccccCCCCC------CCccEEEEEcCc
Q 002218 714 ATTLVDFGCGS--GSLLDSLLDYPTALEKIVGVDISQKSLSRAAKIIHSKLSKKLDAAVPCT------DVKSAVLFDGSI 785 (952)
Q Consensus 714 ~krVLDIGCGe--G~ll~~LAr~g~~~~qVVGVDISeemLe~ArkrLsa~la~~~~~l~Pr~------~~~nVtf~qGDa 785 (952)
.++|.=||+|. +.++..+++.| .+|++.|++++.++.+.+++...+........-.. ...++++. .|.
T Consensus 6 ~~kI~vIGaG~MG~~iA~~la~~G---~~V~l~d~~~~~~~~~~~~i~~~l~~l~~~G~~~g~~~~~~~~~~i~~~-~~~ 81 (319)
T 2dpo_A 6 AGDVLIVGSGLVGRSWAMLFASGG---FRVKLYDIEPRQITGALENIRKEMKSLQQSGSLKGSLSAEEQLSLISSC-TNL 81 (319)
T ss_dssp -CEEEEECCSHHHHHHHHHHHHTT---CCEEEECSCHHHHHHHHHHHHHHHHHHHHTTCCCSSSCHHHHHHTEEEE-CCH
T ss_pred CceEEEEeeCHHHHHHHHHHHHCC---CEEEEEeCCHHHHHHHHHHHHHHHHHHHHcCccccccchHHHhhceEEe-CCH
Confidence 36788899985 34556777777 79999999999999887654433221100000000 01134432 232
Q ss_pred cccCCCCCCccEEEEccccccCChh--HHHHHHHHHHHccCCCEEEEE
Q 002218 786 TVFDSRLHGFDIGTCLEVIEHMEED--EASQFGNIVLSSFRPRILIVS 831 (952)
Q Consensus 786 ~dLpf~d~sFDVVVcieVIEHL~dD--~l~~L~eeI~RvLKPG~LIIS 831 (952)
.+ .....|+|+.. ++++ ....+.+++...++|+.++++
T Consensus 82 ~e---av~~aDlViea-----vpe~~~~k~~v~~~l~~~~~~~~Ii~s 121 (319)
T 2dpo_A 82 AE---AVEGVVHIQEC-----VPENLDLKRKIFAQLDSIVDDRVVLSS 121 (319)
T ss_dssp HH---HTTTEEEEEEC-----CCSCHHHHHHHHHHHHTTCCSSSEEEE
T ss_pred HH---HHhcCCEEEEe-----ccCCHHHHHHHHHHHHhhCCCCeEEEE
Confidence 22 12456776543 3432 234445568889999955543
No 443
>3s2e_A Zinc-containing alcohol dehydrogenase superfamily; FURX, oxidoreductase; HET: NAD; 1.76A {Ralstonia eutropha} PDB: 3s1l_A* 3s2f_A* 3s2g_A* 3s2i_A* 1llu_A* 3meq_A*
Probab=44.02 E-value=30 Score=36.66 Aligned_cols=48 Identities=19% Similarity=0.177 Sum_probs=38.3
Q ss_pred HHhhcCCCCEEEEEcCcc-chHHHHHhcCCCCCceEEEEeCChHHHHHHHH
Q 002218 707 QHIKESCATTLVDFGCGS-GSLLDSLLDYPTALEKIVGVDISQKSLSRAAK 756 (952)
Q Consensus 707 dlL~~~k~krVLDIGCGe-G~ll~~LAr~g~~~~qVVGVDISeemLe~Ark 756 (952)
+.....++.+||-+|+|. |.++..+++..+ .+|+++|.+++.++.+++
T Consensus 160 ~~~~~~~g~~VlV~GaG~vG~~a~qla~~~G--a~Vi~~~~~~~~~~~~~~ 208 (340)
T 3s2e_A 160 KVTDTRPGQWVVISGIGGLGHVAVQYARAMG--LRVAAVDIDDAKLNLARR 208 (340)
T ss_dssp HTTTCCTTSEEEEECCSTTHHHHHHHHHHTT--CEEEEEESCHHHHHHHHH
T ss_pred HHcCCCCCCEEEEECCCHHHHHHHHHHHHCC--CeEEEEeCCHHHHHHHHH
Confidence 344556788999999985 888888887543 699999999999988864
No 444
>1bg6_A N-(1-D-carboxylethyl)-L-norvaline dehydrogenase; L) stereospecific opine dehydrogenase, oxidoreductase; 1.80A {Arthrobacter SP} SCOP: a.100.1.5 c.2.1.6
Probab=42.40 E-value=68 Score=33.81 Aligned_cols=102 Identities=14% Similarity=0.109 Sum_probs=55.2
Q ss_pred CEEEEEcCcc-c-hHHHHHhcCCCCCceEEEEeCChHHHHHHHHHHhhhhhcccccCCCCCCC--ccEEEEEcCccccCC
Q 002218 715 TTLVDFGCGS-G-SLLDSLLDYPTALEKIVGVDISQKSLSRAAKIIHSKLSKKLDAAVPCTDV--KSAVLFDGSITVFDS 790 (952)
Q Consensus 715 krVLDIGCGe-G-~ll~~LAr~g~~~~qVVGVDISeemLe~ArkrLsa~la~~~~~l~Pr~~~--~nVtf~qGDa~dLpf 790 (952)
.+|.=||+|. | .++..|++.+ .+|+++|.+++.++..++...-.+.. .... .++.....+..+
T Consensus 5 mki~iiG~G~~G~~~a~~L~~~g---~~V~~~~r~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~--- 71 (359)
T 1bg6_A 5 KTYAVLGLGNGGHAFAAYLALKG---QSVLAWDIDAQRIKEIQDRGAIIAEG-------PGLAGTAHPDLLTSDIGL--- 71 (359)
T ss_dssp CEEEEECCSHHHHHHHHHHHHTT---CEEEEECSCHHHHHHHHHHTSEEEES-------SSCCEEECCSEEESCHHH---
T ss_pred CeEEEECCCHHHHHHHHHHHhCC---CEEEEEeCCHHHHHHHHhcCCeEEec-------cccccccccceecCCHHH---
Confidence 5899999985 3 3445667766 68999999988777665431000000 0000 000001112211
Q ss_pred CCCCccEEEEccccccCChhHHHHHHHHHHHccCCCEEEEEecC
Q 002218 791 RLHGFDIGTCLEVIEHMEEDEASQFGNIVLSSFRPRILIVSTPN 834 (952)
Q Consensus 791 ~d~sFDVVVcieVIEHL~dD~l~~L~eeI~RvLKPG~LIISTPN 834 (952)
....+|+|+..- +......+.+.+...++++.+++..++
T Consensus 72 ~~~~~D~vi~~v-----~~~~~~~~~~~l~~~l~~~~~vv~~~~ 110 (359)
T 1bg6_A 72 AVKDADVILIVV-----PAIHHASIAANIASYISEGQLIILNPG 110 (359)
T ss_dssp HHTTCSEEEECS-----CGGGHHHHHHHHGGGCCTTCEEEESSC
T ss_pred HHhcCCEEEEeC-----CchHHHHHHHHHHHhCCCCCEEEEcCC
Confidence 124688877643 222223344568888999966666666
No 445
>1yqd_A Sinapyl alcohol dehydrogenase; lignin, monolignol, oxidoreductase, zinc-dependent, plant DE biosynthesis, substrate inhibition; HET: NAP; 1.65A {Populus tremuloides} PDB: 1yqx_A*
Probab=39.96 E-value=38 Score=36.55 Aligned_cols=46 Identities=15% Similarity=0.092 Sum_probs=34.2
Q ss_pred hhcC-CCCEEEEEcCcc-chHHHHHhcCCCCCceEEEEeCChHHHHHHHH
Q 002218 709 IKES-CATTLVDFGCGS-GSLLDSLLDYPTALEKIVGVDISQKSLSRAAK 756 (952)
Q Consensus 709 L~~~-k~krVLDIGCGe-G~ll~~LAr~g~~~~qVVGVDISeemLe~Ark 756 (952)
.... ++.+||-+|+|. |.++..+++..+ .+|+++|.+++-++.+++
T Consensus 182 ~~~~~~g~~VlV~GaG~vG~~~~q~a~~~G--a~Vi~~~~~~~~~~~~~~ 229 (366)
T 1yqd_A 182 FGLDEPGKHIGIVGLGGLGHVAVKFAKAFG--SKVTVISTSPSKKEEALK 229 (366)
T ss_dssp TTCCCTTCEEEEECCSHHHHHHHHHHHHTT--CEEEEEESCGGGHHHHHH
T ss_pred cCcCCCCCEEEEECCCHHHHHHHHHHHHCC--CEEEEEeCCHHHHHHHHH
Confidence 3444 678999999873 667777776543 689999999988877753
No 446
>3d1l_A Putative NADP oxidoreductase BF3122; structural genomics, PSI-2, protein structure initiative, M center for structural genomics, MCSG; 2.19A {Bacteroides fragilis}
Probab=38.71 E-value=1.1e+02 Score=30.90 Aligned_cols=91 Identities=14% Similarity=0.142 Sum_probs=53.9
Q ss_pred CCEEEEEcCcc-ch-HHHHHhcCCCCCce-EEEEeCChHHHHHHHHHHhhhhhcccccCCCCCCCccEEEEEcCccccCC
Q 002218 714 ATTLVDFGCGS-GS-LLDSLLDYPTALEK-IVGVDISQKSLSRAAKIIHSKLSKKLDAAVPCTDVKSAVLFDGSITVFDS 790 (952)
Q Consensus 714 ~krVLDIGCGe-G~-ll~~LAr~g~~~~q-VVGVDISeemLe~ArkrLsa~la~~~~~l~Pr~~~~nVtf~qGDa~dLpf 790 (952)
..+|.=||||. |. ++..|++.+ .+ |+.+|.+++.++...+.+ .+.. ..+..+.
T Consensus 10 ~m~i~iiG~G~mG~~~a~~l~~~g---~~~v~~~~~~~~~~~~~~~~~------------------g~~~-~~~~~~~-- 65 (266)
T 3d1l_A 10 DTPIVLIGAGNLATNLAKALYRKG---FRIVQVYSRTEESARELAQKV------------------EAEY-TTDLAEV-- 65 (266)
T ss_dssp GCCEEEECCSHHHHHHHHHHHHHT---CCEEEEECSSHHHHHHHHHHT------------------TCEE-ESCGGGS--
T ss_pred CCeEEEEcCCHHHHHHHHHHHHCC---CeEEEEEeCCHHHHHHHHHHc------------------CCce-eCCHHHH--
Confidence 35788999984 33 445555655 45 899999998777664431 1222 2233222
Q ss_pred CCCCccEEEEccccccCChhHHHHHHHHHHHccCCCEEEEEecC
Q 002218 791 RLHGFDIGTCLEVIEHMEEDEASQFGNIVLSSFRPRILIVSTPN 834 (952)
Q Consensus 791 ~d~sFDVVVcieVIEHL~dD~l~~L~eeI~RvLKPG~LIISTPN 834 (952)
....|+|+.. ++++....+.+.+...+++|.+++++-+
T Consensus 66 -~~~~Dvvi~a-----v~~~~~~~v~~~l~~~~~~~~ivv~~s~ 103 (266)
T 3d1l_A 66 -NPYAKLYIVS-----LKDSAFAELLQGIVEGKREEALMVHTAG 103 (266)
T ss_dssp -CSCCSEEEEC-----CCHHHHHHHHHHHHTTCCTTCEEEECCT
T ss_pred -hcCCCEEEEe-----cCHHHHHHHHHHHHhhcCCCcEEEECCC
Confidence 2357887664 3434334444567778888866665544
No 447
>1kol_A Formaldehyde dehydrogenase; oxidoreductase; HET: NAD; 1.65A {Pseudomonas putida} SCOP: b.35.1.2 c.2.1.1
Probab=38.70 E-value=40 Score=36.61 Aligned_cols=48 Identities=15% Similarity=0.105 Sum_probs=37.3
Q ss_pred HhhcCCCCEEEEEcCcc-chHHHHHhcCCCCCceEEEEeCChHHHHHHHH
Q 002218 708 HIKESCATTLVDFGCGS-GSLLDSLLDYPTALEKIVGVDISQKSLSRAAK 756 (952)
Q Consensus 708 lL~~~k~krVLDIGCGe-G~ll~~LAr~g~~~~qVVGVDISeemLe~Ark 756 (952)
.....++.+||-+|+|. |.++..+++..+ ..+|+++|.+++-++.+++
T Consensus 180 ~~~~~~g~~VlV~GaG~vG~~aiqlAk~~G-a~~Vi~~~~~~~~~~~a~~ 228 (398)
T 1kol_A 180 TAGVGPGSTVYVAGAGPVGLAAAASARLLG-AAVVIVGDLNPARLAHAKA 228 (398)
T ss_dssp HTTCCTTCEEEEECCSHHHHHHHHHHHHTT-CSEEEEEESCHHHHHHHHH
T ss_pred HcCCCCCCEEEEECCcHHHHHHHHHHHHCC-CCeEEEEcCCHHHHHHHHH
Confidence 34556788999999975 888888887542 1379999999999988854
No 448
>4dvj_A Putative zinc-dependent alcohol dehydrogenase Pro; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 1.99A {Rhizobium etli}
Probab=38.63 E-value=67 Score=34.65 Aligned_cols=42 Identities=12% Similarity=0.205 Sum_probs=34.2
Q ss_pred CCCEEEEEc-Cc-cchHHHHHhcC-CCCCceEEEEeCChHHHHHHHH
Q 002218 713 CATTLVDFG-CG-SGSLLDSLLDY-PTALEKIVGVDISQKSLSRAAK 756 (952)
Q Consensus 713 k~krVLDIG-CG-eG~ll~~LAr~-g~~~~qVVGVDISeemLe~Ark 756 (952)
++.+||=+| +| .|.++..+++. ++ .+|+++|.+++-++.+++
T Consensus 171 ~g~~VlV~Ga~G~vG~~a~qlak~~~g--~~Vi~~~~~~~~~~~~~~ 215 (363)
T 4dvj_A 171 AAPAILIVGGAGGVGSIAVQIARQRTD--LTVIATASRPETQEWVKS 215 (363)
T ss_dssp SEEEEEEESTTSHHHHHHHHHHHHHCC--SEEEEECSSHHHHHHHHH
T ss_pred CCCEEEEECCCCHHHHHHHHHHHHhcC--CEEEEEeCCHHHHHHHHH
Confidence 567899998 55 58888888885 43 799999999998888854
No 449
>3lyl_A 3-oxoacyl-(acyl-carrier-protein) reductase; alpha and beta protein, NAD(P)-binding rossmann fold, csgid, oxidoreductase; 1.95A {Francisella tularensis subsp} SCOP: c.2.1.2
Probab=37.49 E-value=93 Score=30.92 Aligned_cols=76 Identities=18% Similarity=0.088 Sum_probs=53.5
Q ss_pred CCCEEEEEcCccch---HHHHHhcCCCCCceEEEEeCChHHHHHHHHHHhhhhhcccccCCCCCCCccEEEEEcCccccC
Q 002218 713 CATTLVDFGCGSGS---LLDSLLDYPTALEKIVGVDISQKSLSRAAKIIHSKLSKKLDAAVPCTDVKSAVLFDGSITVFD 789 (952)
Q Consensus 713 k~krVLDIGCGeG~---ll~~LAr~g~~~~qVVGVDISeemLe~ArkrLsa~la~~~~~l~Pr~~~~nVtf~qGDa~dLp 789 (952)
.++++|=.|++.|. ++..|++.| .+|+.+|.+++.++...+.+.. ...++.++.+|+.+..
T Consensus 4 ~~k~vlITGas~gIG~~~a~~l~~~G---~~v~~~~r~~~~~~~~~~~~~~-------------~~~~~~~~~~D~~~~~ 67 (247)
T 3lyl_A 4 NEKVALVTGASRGIGFEVAHALASKG---ATVVGTATSQASAEKFENSMKE-------------KGFKARGLVLNISDIE 67 (247)
T ss_dssp TTCEEEESSCSSHHHHHHHHHHHHTT---CEEEEEESSHHHHHHHHHHHHH-------------TTCCEEEEECCTTCHH
T ss_pred CCCEEEEECCCChHHHHHHHHHHHCC---CEEEEEeCCHHHHHHHHHHHHh-------------cCCceEEEEecCCCHH
Confidence 46788888876653 456777887 7999999999888776655432 1236889999987743
Q ss_pred C----------CCCCccEEEEcccc
Q 002218 790 S----------RLHGFDIGTCLEVI 804 (952)
Q Consensus 790 f----------~d~sFDVVVcieVI 804 (952)
. ..+..|+++..-.+
T Consensus 68 ~~~~~~~~~~~~~~~id~li~~Ag~ 92 (247)
T 3lyl_A 68 SIQNFFAEIKAENLAIDILVNNAGI 92 (247)
T ss_dssp HHHHHHHHHHHTTCCCSEEEECCCC
T ss_pred HHHHHHHHHHHHcCCCCEEEECCCC
Confidence 1 23468999886543
No 450
>3uog_A Alcohol dehydrogenase; structural genomics, protein structure initiative, PSI-biolo YORK structural genomics research consortium; 2.20A {Sinorhizobium meliloti 1021}
Probab=36.95 E-value=49 Score=35.55 Aligned_cols=51 Identities=14% Similarity=0.102 Sum_probs=39.0
Q ss_pred HHHHHhhcCCCCEEEEEcCcc-chHHHHHhcCCCCCceEEEEeCChHHHHHHHH
Q 002218 704 YALQHIKESCATTLVDFGCGS-GSLLDSLLDYPTALEKIVGVDISQKSLSRAAK 756 (952)
Q Consensus 704 fVldlL~~~k~krVLDIGCGe-G~ll~~LAr~g~~~~qVVGVDISeemLe~Ark 756 (952)
.+.+.....++.+||-+|+|. |.++..+++..+ .+|+++|.+++-++.+++
T Consensus 180 al~~~~~~~~g~~VlV~G~G~vG~~a~qla~~~G--a~Vi~~~~~~~~~~~~~~ 231 (363)
T 3uog_A 180 ALVEKGHLRAGDRVVVQGTGGVALFGLQIAKATG--AEVIVTSSSREKLDRAFA 231 (363)
T ss_dssp HHTTTTCCCTTCEEEEESSBHHHHHHHHHHHHTT--CEEEEEESCHHHHHHHHH
T ss_pred HHHHhcCCCCCCEEEEECCCHHHHHHHHHHHHcC--CEEEEEecCchhHHHHHH
Confidence 343445556788999999885 777777777543 799999999998888864
No 451
>3f9i_A 3-oxoacyl-[acyl-carrier-protein] reductase; 3-ketoacyl-(acyl-carrier-protein) reductase, FAT biosynthesis, lipid synthesis, NADP; 2.25A {Rickettsia prowazekii} SCOP: c.2.1.0
Probab=36.73 E-value=73 Score=31.73 Aligned_cols=74 Identities=15% Similarity=0.154 Sum_probs=51.9
Q ss_pred CCCCEEEEEcCccch---HHHHHhcCCCCCceEEEEeCChHHHHHHHHHHhhhhhcccccCCCCCCCccEEEEEcCcccc
Q 002218 712 SCATTLVDFGCGSGS---LLDSLLDYPTALEKIVGVDISQKSLSRAAKIIHSKLSKKLDAAVPCTDVKSAVLFDGSITVF 788 (952)
Q Consensus 712 ~k~krVLDIGCGeG~---ll~~LAr~g~~~~qVVGVDISeemLe~ArkrLsa~la~~~~~l~Pr~~~~nVtf~qGDa~dL 788 (952)
.++++||=.|++.|. ++..|++.| .+|+.+|.+++.++...+.+. .++.+..+|+.+.
T Consensus 12 ~~~k~vlVTGas~gIG~~~a~~l~~~G---~~V~~~~r~~~~~~~~~~~~~----------------~~~~~~~~D~~~~ 72 (249)
T 3f9i_A 12 LTGKTSLITGASSGIGSAIARLLHKLG---SKVIISGSNEEKLKSLGNALK----------------DNYTIEVCNLANK 72 (249)
T ss_dssp CTTCEEEETTTTSHHHHHHHHHHHHTT---CEEEEEESCHHHHHHHHHHHC----------------SSEEEEECCTTSH
T ss_pred CCCCEEEEECCCChHHHHHHHHHHHCC---CEEEEEcCCHHHHHHHHHHhc----------------cCccEEEcCCCCH
Confidence 467899999987653 446777777 799999999987776655431 2578888888764
Q ss_pred CC------CCCCccEEEEcccc
Q 002218 789 DS------RLHGFDIGTCLEVI 804 (952)
Q Consensus 789 pf------~d~sFDVVVcieVI 804 (952)
.. .....|+++..-.+
T Consensus 73 ~~~~~~~~~~~~id~li~~Ag~ 94 (249)
T 3f9i_A 73 EECSNLISKTSNLDILVCNAGI 94 (249)
T ss_dssp HHHHHHHHTCSCCSEEEECCC-
T ss_pred HHHHHHHHhcCCCCEEEECCCC
Confidence 31 22468999886554
No 452
>2g5c_A Prephenate dehydrogenase; TYRA, oxidoreductase; HET: NAD; 1.90A {Aquifex aeolicus} SCOP: a.100.1.12 c.2.1.6
Probab=36.70 E-value=2e+02 Score=29.26 Aligned_cols=90 Identities=19% Similarity=0.140 Sum_probs=51.6
Q ss_pred CEEEEEcCcc--chHHHHHhcCCCCCceEEEEeCChHHHHHHHHHHhhhhhcccccCCCCCCCccEEEEEcCccccCCCC
Q 002218 715 TTLVDFGCGS--GSLLDSLLDYPTALEKIVGVDISQKSLSRAAKIIHSKLSKKLDAAVPCTDVKSAVLFDGSITVFDSRL 792 (952)
Q Consensus 715 krVLDIGCGe--G~ll~~LAr~g~~~~qVVGVDISeemLe~ArkrLsa~la~~~~~l~Pr~~~~nVtf~qGDa~dLpf~d 792 (952)
++|.=||+|. +.++..|++.+ ...+|+++|.+++.++.+++. +... .. ..|..+ ..
T Consensus 2 ~~I~iIG~G~mG~~~a~~l~~~g-~~~~V~~~d~~~~~~~~~~~~----------------g~~~-~~-~~~~~~---~~ 59 (281)
T 2g5c_A 2 QNVLIVGVGFMGGSFAKSLRRSG-FKGKIYGYDINPESISKAVDL----------------GIID-EG-TTSIAK---VE 59 (281)
T ss_dssp CEEEEESCSHHHHHHHHHHHHTT-CCSEEEEECSCHHHHHHHHHT----------------TSCS-EE-ESCGGG---GG
T ss_pred cEEEEEecCHHHHHHHHHHHhcC-CCcEEEEEeCCHHHHHHHHHC----------------CCcc-cc-cCCHHH---Hh
Confidence 3688899985 33445666665 113899999999887766431 1100 11 122222 12
Q ss_pred C-CccEEEEccccccCChhHHHHHHHHHHHccCCCEEEEE
Q 002218 793 H-GFDIGTCLEVIEHMEEDEASQFGNIVLSSFRPRILIVS 831 (952)
Q Consensus 793 ~-sFDVVVcieVIEHL~dD~l~~L~eeI~RvLKPG~LIIS 831 (952)
. ..|+|+.. +++.....+.+.+...++++.+|+.
T Consensus 60 ~~~aDvVila-----vp~~~~~~v~~~l~~~l~~~~iv~~ 94 (281)
T 2g5c_A 60 DFSPDFVMLS-----SPVRTFREIAKKLSYILSEDATVTD 94 (281)
T ss_dssp GTCCSEEEEC-----SCHHHHHHHHHHHHHHSCTTCEEEE
T ss_pred cCCCCEEEEc-----CCHHHHHHHHHHHHhhCCCCcEEEE
Confidence 3 67887653 4544444455567788999854444
No 453
>3qiv_A Short-chain dehydrogenase or 3-oxoacyl-[acyl-CARR protein] reductase; structural genomics; 2.25A {Mycobacterium avium subsp}
Probab=35.91 E-value=1.1e+02 Score=30.47 Aligned_cols=76 Identities=21% Similarity=0.187 Sum_probs=54.9
Q ss_pred CCCEEEEEcCccch---HHHHHhcCCCCCceEEEEeCChHHHHHHHHHHhhhhhcccccCCCCCCCccEEEEEcCccccC
Q 002218 713 CATTLVDFGCGSGS---LLDSLLDYPTALEKIVGVDISQKSLSRAAKIIHSKLSKKLDAAVPCTDVKSAVLFDGSITVFD 789 (952)
Q Consensus 713 k~krVLDIGCGeG~---ll~~LAr~g~~~~qVVGVDISeemLe~ArkrLsa~la~~~~~l~Pr~~~~nVtf~qGDa~dLp 789 (952)
.++++|=.|++.|. ++..|++.| .+|+.+|.+++.++...+.+.. ...++.++.+|+.+..
T Consensus 8 ~~k~vlITGas~giG~~~a~~l~~~G---~~V~~~~r~~~~~~~~~~~~~~-------------~~~~~~~~~~D~~~~~ 71 (253)
T 3qiv_A 8 ENKVGIVTGSGGGIGQAYAEALAREG---AAVVVADINAEAAEAVAKQIVA-------------DGGTAISVAVDVSDPE 71 (253)
T ss_dssp TTCEEEEETTTSHHHHHHHHHHHHTT---CEEEEEESCHHHHHHHHHHHHH-------------TTCEEEEEECCTTSHH
T ss_pred CCCEEEEECCCChHHHHHHHHHHHCC---CEEEEEcCCHHHHHHHHHHHHh-------------cCCcEEEEEccCCCHH
Confidence 56889999987653 456777887 7999999999888877665532 1236888999998753
Q ss_pred C----------CCCCccEEEEcccc
Q 002218 790 S----------RLHGFDIGTCLEVI 804 (952)
Q Consensus 790 f----------~d~sFDVVVcieVI 804 (952)
. ..+..|+++..-.+
T Consensus 72 ~~~~~~~~~~~~~g~id~li~~Ag~ 96 (253)
T 3qiv_A 72 SAKAMADRTLAEFGGIDYLVNNAAI 96 (253)
T ss_dssp HHHHHHHHHHHHHSCCCEEEECCCC
T ss_pred HHHHHHHHHHHHcCCCCEEEECCCc
Confidence 2 12478999987544
No 454
>1e3j_A NADP(H)-dependent ketose reductase; oxidoreductase, fructose reduction; 2.3A {Bemisia argentifolii} SCOP: b.35.1.2 c.2.1.1
Probab=35.83 E-value=51 Score=35.13 Aligned_cols=48 Identities=19% Similarity=0.122 Sum_probs=37.0
Q ss_pred HHhhcCCCCEEEEEcCcc-chHHHHHhcCCCCCceEEEEeCChHHHHHHHH
Q 002218 707 QHIKESCATTLVDFGCGS-GSLLDSLLDYPTALEKIVGVDISQKSLSRAAK 756 (952)
Q Consensus 707 dlL~~~k~krVLDIGCGe-G~ll~~LAr~g~~~~qVVGVDISeemLe~Ark 756 (952)
+.....++.+||-+|+|. |.++..+++..+ .+|+++|.+++.++.+++
T Consensus 162 ~~~~~~~g~~VlV~GaG~vG~~a~qla~~~G--a~Vi~~~~~~~~~~~~~~ 210 (352)
T 1e3j_A 162 RRAGVQLGTTVLVIGAGPIGLVSVLAAKAYG--AFVVCTARSPRRLEVAKN 210 (352)
T ss_dssp HHHTCCTTCEEEEECCSHHHHHHHHHHHHTT--CEEEEEESCHHHHHHHHH
T ss_pred HhcCCCCCCEEEEECCCHHHHHHHHHHHHcC--CEEEEEcCCHHHHHHHHH
Confidence 444556788999999875 777777776443 679999999998888864
No 455
>3swr_A DNA (cytosine-5)-methyltransferase 1; epigenetics, DNA methyltransferase fold, maintenance methyla transferase; HET: DNA SFG MES; 2.49A {Homo sapiens} PDB: 3pta_A* 3pt6_A* 3pt9_A* 4da4_A*
Probab=35.56 E-value=38 Score=42.55 Aligned_cols=44 Identities=9% Similarity=0.070 Sum_probs=34.9
Q ss_pred CCCEEEEEcCccchHHHHHhcCCCCCceEEEEeCChHHHHHHHHH
Q 002218 713 CATTLVDFGCGSGSLLDSLLDYPTALEKIVGVDISQKSLSRAAKI 757 (952)
Q Consensus 713 k~krVLDIGCGeG~ll~~LAr~g~~~~qVVGVDISeemLe~Arkr 757 (952)
...+++|+=||-|.+...|.+.|- ...+.++|+++.+++.-+.+
T Consensus 539 ~~l~~iDLFaG~GGlslGl~~AG~-~~vv~avEid~~A~~ty~~N 582 (1002)
T 3swr_A 539 PKLRTLDVFSGCGGLSEGFHQAGI-SDTLWAIEMWDPAAQAFRLN 582 (1002)
T ss_dssp CCEEEEEESCTTSHHHHHHHHHTS-EEEEEEECSSHHHHHHHHHH
T ss_pred CCCeEEEeccCccHHHHHHHHCCC-CceEEEEECCHHHHHHHHHh
Confidence 345899999999999999887761 13578999999988876554
No 456
>3o26_A Salutaridine reductase; short chain dehydrogenase/reductases, oxidoreductase; HET: NDP; 1.91A {Papaver somniferum} SCOP: c.2.1.0
Probab=34.91 E-value=91 Score=31.73 Aligned_cols=77 Identities=13% Similarity=0.025 Sum_probs=54.7
Q ss_pred CCCEEEEEcCccch---HHHHHhcCCCCCceEEEEeCChHHHHHHHHHHhhhhhcccccCCCCCCCccEEEEEcCcccc-
Q 002218 713 CATTLVDFGCGSGS---LLDSLLDYPTALEKIVGVDISQKSLSRAAKIIHSKLSKKLDAAVPCTDVKSAVLFDGSITVF- 788 (952)
Q Consensus 713 k~krVLDIGCGeG~---ll~~LAr~g~~~~qVVGVDISeemLe~ArkrLsa~la~~~~~l~Pr~~~~nVtf~qGDa~dL- 788 (952)
.+++||=.|++.|. ++..|++.| .+|++++.+.+.++.+.+.+.. ....++.++.+|+.+.
T Consensus 11 ~~k~vlITGas~GIG~~~a~~L~~~G---~~V~~~~r~~~~~~~~~~~l~~------------~~~~~~~~~~~Dl~~~~ 75 (311)
T 3o26_A 11 KRRCAVVTGGNKGIGFEICKQLSSNG---IMVVLTCRDVTKGHEAVEKLKN------------SNHENVVFHQLDVTDPI 75 (311)
T ss_dssp -CCEEEESSCSSHHHHHHHHHHHHTT---CEEEEEESCHHHHHHHHHHHHT------------TTCCSEEEEECCTTSCH
T ss_pred CCcEEEEecCCchHHHHHHHHHHHCC---CEEEEEeCCHHHHHHHHHHHHh------------cCCCceEEEEccCCCcH
Confidence 56789988987653 446677777 7999999999888777665532 1224789999999875
Q ss_pred CC----------CCCCccEEEEcccc
Q 002218 789 DS----------RLHGFDIGTCLEVI 804 (952)
Q Consensus 789 pf----------~d~sFDVVVcieVI 804 (952)
.. ..+..|++|..-.+
T Consensus 76 ~~v~~~~~~~~~~~g~iD~lv~nAg~ 101 (311)
T 3o26_A 76 ATMSSLADFIKTHFGKLDILVNNAGV 101 (311)
T ss_dssp HHHHHHHHHHHHHHSSCCEEEECCCC
T ss_pred HHHHHHHHHHHHhCCCCCEEEECCcc
Confidence 21 12479999987654
No 457
>3fpc_A NADP-dependent alcohol dehydrogenase; oxydoreductase, bacterial alcohol dehydrogenase, domain exchange, chimera, metal-binding; 1.40A {Thermoanaerobacter brockii} PDB: 2nvb_A* 1ykf_A* 1bxz_A* 3ftn_A 3fsr_A 1y9a_A* 2oui_A* 3fpl_A* 1jqb_A 1kev_A* 1ped_A 2b83_A
Probab=34.62 E-value=78 Score=33.71 Aligned_cols=49 Identities=14% Similarity=0.094 Sum_probs=38.5
Q ss_pred HHhhcCCCCEEEEEcCcc-chHHHHHhcCCCCCceEEEEeCChHHHHHHHH
Q 002218 707 QHIKESCATTLVDFGCGS-GSLLDSLLDYPTALEKIVGVDISQKSLSRAAK 756 (952)
Q Consensus 707 dlL~~~k~krVLDIGCGe-G~ll~~LAr~g~~~~qVVGVDISeemLe~Ark 756 (952)
+.....++.+||-+|+|. |.++..+++..+ ..+|+++|.+++-++.+++
T Consensus 160 ~~~~~~~g~~VlV~GaG~vG~~a~qla~~~G-a~~Vi~~~~~~~~~~~~~~ 209 (352)
T 3fpc_A 160 ELANIKLGDTVCVIGIGPVGLMSVAGANHLG-AGRIFAVGSRKHCCDIALE 209 (352)
T ss_dssp HHTTCCTTCCEEEECCSHHHHHHHHHHHTTT-CSSEEEECCCHHHHHHHHH
T ss_pred HhcCCCCCCEEEEECCCHHHHHHHHHHHHcC-CcEEEEECCCHHHHHHHHH
Confidence 455566788999999985 888888887653 2389999999998888865
No 458
>3o38_A Short chain dehydrogenase; tuberculosis, ortholog from A non-pathogenic dehydrogenase, structural genomics; 1.95A {Mycobacterium smegmatis}
Probab=34.07 E-value=1.1e+02 Score=30.82 Aligned_cols=78 Identities=10% Similarity=0.055 Sum_probs=55.5
Q ss_pred CCCCEEEEEcC-ccch---HHHHHhcCCCCCceEEEEeCChHHHHHHHHHHhhhhhcccccCCCCCCCccEEEEEcCccc
Q 002218 712 SCATTLVDFGC-GSGS---LLDSLLDYPTALEKIVGVDISQKSLSRAAKIIHSKLSKKLDAAVPCTDVKSAVLFDGSITV 787 (952)
Q Consensus 712 ~k~krVLDIGC-GeG~---ll~~LAr~g~~~~qVVGVDISeemLe~ArkrLsa~la~~~~~l~Pr~~~~nVtf~qGDa~d 787 (952)
..++++|=.|. |.|. ++..|++.| .+|+.+|.+.+.++...+.+.. ....++.++.+|+.+
T Consensus 20 l~~k~vlITGasg~GIG~~~a~~l~~~G---~~V~~~~r~~~~~~~~~~~l~~------------~~~~~~~~~~~Dl~~ 84 (266)
T 3o38_A 20 LKGKVVLVTAAAGTGIGSTTARRALLEG---ADVVISDYHERRLGETRDQLAD------------LGLGRVEAVVCDVTS 84 (266)
T ss_dssp TTTCEEEESSCSSSSHHHHHHHHHHHTT---CEEEEEESCHHHHHHHHHHHHT------------TCSSCEEEEECCTTC
T ss_pred CCCCEEEEECCCCCchHHHHHHHHHHCC---CEEEEecCCHHHHHHHHHHHHh------------cCCCceEEEEeCCCC
Confidence 35688999997 5543 456778887 7999999999888777665532 123478999999987
Q ss_pred cCC----------CCCCccEEEEcccc
Q 002218 788 FDS----------RLHGFDIGTCLEVI 804 (952)
Q Consensus 788 Lpf----------~d~sFDVVVcieVI 804 (952)
... ..+..|+++..-.+
T Consensus 85 ~~~v~~~~~~~~~~~g~id~li~~Ag~ 111 (266)
T 3o38_A 85 TEAVDALITQTVEKAGRLDVLVNNAGL 111 (266)
T ss_dssp HHHHHHHHHHHHHHHSCCCEEEECCCC
T ss_pred HHHHHHHHHHHHHHhCCCcEEEECCCc
Confidence 532 12468999987654
No 459
>3mog_A Probable 3-hydroxybutyryl-COA dehydrogenase; structural genomics, PSI, protein structure initiative, NYSG oxidoreductase; 2.20A {Escherichia coli}
Probab=33.53 E-value=1.1e+02 Score=34.88 Aligned_cols=100 Identities=19% Similarity=0.258 Sum_probs=59.7
Q ss_pred CEEEEEcCcc--chHHHHHhcCCCCCceEEEEeCChHHHHHHHHHHhhhhhcccccCCCCCC---------CccEEEEEc
Q 002218 715 TTLVDFGCGS--GSLLDSLLDYPTALEKIVGVDISQKSLSRAAKIIHSKLSKKLDAAVPCTD---------VKSAVLFDG 783 (952)
Q Consensus 715 krVLDIGCGe--G~ll~~LAr~g~~~~qVVGVDISeemLe~ArkrLsa~la~~~~~l~Pr~~---------~~nVtf~qG 783 (952)
++|.=||+|. +.++..+++.| .+|++.|++++.++.+.+.+...+..... +.. ..++++. .
T Consensus 6 ~kVgVIGaG~MG~~IA~~la~aG---~~V~l~D~~~e~l~~~~~~i~~~l~~~~~----~g~~~~~~~~~~~~~i~~~-~ 77 (483)
T 3mog_A 6 QTVAVIGSGTMGAGIAEVAASHG---HQVLLYDISAEALTRAIDGIHARLNSRVT----RGKLTAETCERTLKRLIPV-T 77 (483)
T ss_dssp CCEEEECCSHHHHHHHHHHHHTT---CCEEEECSCHHHHHHHHHHHHHHHHTTTT----TTSSCHHHHHHHHHTEEEE-C
T ss_pred CEEEEECcCHHHHHHHHHHHHCC---CeEEEEECCHHHHHHHHHHHHHHHHHHHH----cCCCCHHHHHHHHhceeEe-C
Confidence 5678889985 34556777777 78999999999999987765443322100 011 1134432 2
Q ss_pred CccccCCCCCCccEEEEccccccCChh--HHHHHHHHHHHccCCCEEEEE
Q 002218 784 SITVFDSRLHGFDIGTCLEVIEHMEED--EASQFGNIVLSSFRPRILIVS 831 (952)
Q Consensus 784 Da~dLpf~d~sFDVVVcieVIEHL~dD--~l~~L~eeI~RvLKPG~LIIS 831 (952)
|... ....|+|+.. ++++ ..+.+.+++...++|+.++++
T Consensus 78 ~~~~----~~~aDlVIeA-----Vpe~~~vk~~v~~~l~~~~~~~~Ilas 118 (483)
T 3mog_A 78 DIHA----LAAADLVIEA-----ASERLEVKKALFAQLAEVCPPQTLLTT 118 (483)
T ss_dssp CGGG----GGGCSEEEEC-----CCCCHHHHHHHHHHHHHHSCTTCEEEE
T ss_pred CHHH----hcCCCEEEEc-----CCCcHHHHHHHHHHHHHhhccCcEEEe
Confidence 3322 2457877653 3332 233455568899999955544
No 460
>1uuf_A YAHK, zinc-type alcohol dehydrogenase-like protein YAHK; oxidoreductase, zinc binding, oxydoreductase, metal-binding; 1.76A {Escherichia coli} SCOP: b.35.1.2 c.2.1.1
Probab=33.24 E-value=46 Score=36.04 Aligned_cols=46 Identities=15% Similarity=0.105 Sum_probs=36.5
Q ss_pred hhcCCCCEEEEEcCcc-chHHHHHhcCCCCCceEEEEeCChHHHHHHHH
Q 002218 709 IKESCATTLVDFGCGS-GSLLDSLLDYPTALEKIVGVDISQKSLSRAAK 756 (952)
Q Consensus 709 L~~~k~krVLDIGCGe-G~ll~~LAr~g~~~~qVVGVDISeemLe~Ark 756 (952)
....++.+||-+|+|. |.++..+++..+ .+|+++|.+++.++.+++
T Consensus 190 ~~~~~g~~VlV~GaG~vG~~aiqlak~~G--a~Vi~~~~~~~~~~~a~~ 236 (369)
T 1uuf_A 190 WQAGPGKKVGVVGIGGLGHMGIKLAHAMG--AHVVAFTTSEAKREAAKA 236 (369)
T ss_dssp TTCCTTCEEEEECCSHHHHHHHHHHHHTT--CEEEEEESSGGGHHHHHH
T ss_pred cCCCCCCEEEEECCCHHHHHHHHHHHHCC--CEEEEEeCCHHHHHHHHH
Confidence 3455778999999985 778878877543 689999999998888864
No 461
>2hmt_A YUAA protein; RCK, KTN, KTR, KTRA, ktrab, membrane protein, ION transporter, symporter, transport protein; HET: NAI; 2.20A {Bacillus subtilis} SCOP: c.2.1.9 PDB: 2hms_A* 2hmu_A* 2hmv_A* 2hmw_A* 1lsu_A*
Probab=33.13 E-value=1.1e+02 Score=27.21 Aligned_cols=103 Identities=17% Similarity=0.219 Sum_probs=53.5
Q ss_pred CCEEEEEcCcc-chH-HHHHhcCCCCCceEEEEeCChHHHHHHHHHHhhhhhcccccCCCCCCCccEEEEEcCccccCC-
Q 002218 714 ATTLVDFGCGS-GSL-LDSLLDYPTALEKIVGVDISQKSLSRAAKIIHSKLSKKLDAAVPCTDVKSAVLFDGSITVFDS- 790 (952)
Q Consensus 714 ~krVLDIGCGe-G~l-l~~LAr~g~~~~qVVGVDISeemLe~ArkrLsa~la~~~~~l~Pr~~~~nVtf~qGDa~dLpf- 790 (952)
.++|+=+|+|. |.. +..|.+.+ .+|+++|.+++.++.+++ . ...++.+|..+...
T Consensus 6 ~~~v~I~G~G~iG~~~a~~l~~~g---~~v~~~d~~~~~~~~~~~----------------~---~~~~~~~d~~~~~~l 63 (144)
T 2hmt_A 6 NKQFAVIGLGRFGGSIVKELHRMG---HEVLAVDINEEKVNAYAS----------------Y---ATHAVIANATEENEL 63 (144)
T ss_dssp CCSEEEECCSHHHHHHHHHHHHTT---CCCEEEESCHHHHHTTTT----------------T---CSEEEECCTTCHHHH
T ss_pred CCcEEEECCCHHHHHHHHHHHHCC---CEEEEEeCCHHHHHHHHH----------------h---CCEEEEeCCCCHHHH
Confidence 46799999863 222 23445555 689999998765443211 0 23456677654221
Q ss_pred ---CCCCccEEEEccccccCChhHHHHHHHHHHHccCCCEEEEEecCCchhHHHH
Q 002218 791 ---RLHGFDIGTCLEVIEHMEEDEASQFGNIVLSSFRPRILIVSTPNYEYNAILQ 842 (952)
Q Consensus 791 ---~d~sFDVVVcieVIEHL~dD~l~~L~eeI~RvLKPG~LIISTPN~efN~lf~ 842 (952)
....+|+|+..---. ...........+.+.+..+++..-+..+...+.
T Consensus 64 ~~~~~~~~d~vi~~~~~~----~~~~~~~~~~~~~~~~~~ii~~~~~~~~~~~l~ 114 (144)
T 2hmt_A 64 LSLGIRNFEYVIVAIGAN----IQASTLTTLLLKELDIPNIWVKAQNYYHHKVLE 114 (144)
T ss_dssp HTTTGGGCSEEEECCCSC----HHHHHHHHHHHHHTTCSEEEEECCSHHHHHHHH
T ss_pred HhcCCCCCCEEEECCCCc----hHHHHHHHHHHHHcCCCeEEEEeCCHHHHHHHH
Confidence 134689887643211 121222223455566665555554444443333
No 462
>3gt0_A Pyrroline-5-carboxylate reductase; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG; 2.00A {Bacillus cereus atcc 14579}
Probab=32.92 E-value=34 Score=34.75 Aligned_cols=94 Identities=14% Similarity=0.165 Sum_probs=51.8
Q ss_pred CEEEEEcCcc--chHHHHHhcCCC-CCceEEEEeCChHHHHHHHHHHhhhhhcccccCCCCCCCccEEEEEcCccccCCC
Q 002218 715 TTLVDFGCGS--GSLLDSLLDYPT-ALEKIVGVDISQKSLSRAAKIIHSKLSKKLDAAVPCTDVKSAVLFDGSITVFDSR 791 (952)
Q Consensus 715 krVLDIGCGe--G~ll~~LAr~g~-~~~qVVGVDISeemLe~ArkrLsa~la~~~~~l~Pr~~~~nVtf~qGDa~dLpf~ 791 (952)
.+|.=||||. +.++..|++.+. +..+|++.|.+++.++...+.+ .+.. ..|..+.
T Consensus 3 ~~i~iIG~G~mG~~~a~~l~~~g~~~~~~V~~~~r~~~~~~~~~~~~------------------g~~~-~~~~~e~--- 60 (247)
T 3gt0_A 3 KQIGFIGCGNMGMAMIGGMINKNIVSSNQIICSDLNTANLKNASEKY------------------GLTT-TTDNNEV--- 60 (247)
T ss_dssp CCEEEECCSHHHHHHHHHHHHTTSSCGGGEEEECSCHHHHHHHHHHH------------------CCEE-CSCHHHH---
T ss_pred CeEEEECccHHHHHHHHHHHhCCCCCCCeEEEEeCCHHHHHHHHHHh------------------CCEE-eCChHHH---
Confidence 4688899994 235566667650 1138999999998777665432 1111 1122111
Q ss_pred CCCccEEEEccccccCChhHHHHHHHHHHHccCCCEEEEEecCC
Q 002218 792 LHGFDIGTCLEVIEHMEEDEASQFGNIVLSSFRPRILIVSTPNY 835 (952)
Q Consensus 792 d~sFDVVVcieVIEHL~dD~l~~L~eeI~RvLKPG~LIISTPN~ 835 (952)
....|+|+..- ++.....+.+.+...++|+.++++..+.
T Consensus 61 ~~~aDvVilav-----~~~~~~~v~~~l~~~l~~~~~vvs~~~g 99 (247)
T 3gt0_A 61 AKNADILILSI-----KPDLYASIINEIKEIIKNDAIIVTIAAG 99 (247)
T ss_dssp HHHCSEEEECS-----CTTTHHHHC---CCSSCTTCEEEECSCC
T ss_pred HHhCCEEEEEe-----CHHHHHHHHHHHHhhcCCCCEEEEecCC
Confidence 12468877643 3333344445677788888666655443
No 463
>1cdo_A Alcohol dehydrogenase; oxidoreductase, oxidoreductase (CH-OH(D)-NAD(A)); HET: NAD; 2.05A {Gadus callarias} SCOP: b.35.1.2 c.2.1.1
Probab=32.88 E-value=41 Score=36.17 Aligned_cols=48 Identities=21% Similarity=0.247 Sum_probs=36.7
Q ss_pred HHhhcCCCCEEEEEcCcc-chHHHHHhcCCCCCc-eEEEEeCChHHHHHHHH
Q 002218 707 QHIKESCATTLVDFGCGS-GSLLDSLLDYPTALE-KIVGVDISQKSLSRAAK 756 (952)
Q Consensus 707 dlL~~~k~krVLDIGCGe-G~ll~~LAr~g~~~~-qVVGVDISeemLe~Ark 756 (952)
+.....++.+||-+|+|. |.++..+++..+ . +|+++|.+++-++.+++
T Consensus 186 ~~~~~~~g~~VlV~GaG~vG~~a~qla~~~G--a~~Vi~~~~~~~~~~~~~~ 235 (374)
T 1cdo_A 186 NTAKVEPGSTCAVFGLGAVGLAAVMGCHSAG--AKRIIAVDLNPDKFEKAKV 235 (374)
T ss_dssp TTTCCCTTCEEEEECCSHHHHHHHHHHHHTT--CSEEEEECSCGGGHHHHHH
T ss_pred hccCCCCCCEEEEECCCHHHHHHHHHHHHcC--CCEEEEEcCCHHHHHHHHH
Confidence 344455778999999874 777777776542 5 89999999998888864
No 464
>1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A
Probab=32.84 E-value=68 Score=35.45 Aligned_cols=92 Identities=17% Similarity=0.289 Sum_probs=61.2
Q ss_pred ccCCCCceeEEEEEEEEeecccchhhhhccccceEEEeccCc---cchhhhhhhhhccccccceecccCCchhhhhhhcc
Q 002218 579 IYPSNGCLSFISYSVSLVIEGETMKELLESREEFEFEMGTGA---VIPQVEVVTAQMSVGQSACFCKELPPQELILAAAD 655 (952)
Q Consensus 579 ~~p~~gs~~~i~y~~~l~~~~~~~~~~~e~~~~~~fe~g~~a---~~~~l~~v~~q~sv~q~~~~~~~l~~~~l~lAa~~ 655 (952)
-.|..|+.|.+.|+..| +| .+.+++ +++|.+|.|. ++.-++..+..|..|..+.+. ++|.- +-+
T Consensus 160 ~~p~~g~~V~v~y~g~~--~g----~~f~~~-~~~f~~g~g~~~~v~~~~e~al~~~~~ge~~~l~--i~P~~----ay~ 226 (457)
T 1kt0_A 160 SNPNEGATVEIHLEGRC--GG----RMFDCR-DVAFTVGEGEDHDIPIGIDKALEKMQREEQCILY--LGPRY----GFG 226 (457)
T ss_dssp CCCCTTCEEEEEEEEEE--TT----EEEEEE-EEEEETTCGGGGTCCHHHHHHHTTCCBTCEEEEE--ECGGG----TTC
T ss_pred CCCCCCCEEEEEEEEEe--CC----eEEecC-ceEEEeCCCccccCChHHHHHHHhCCCCCEEEEE--ECccc----ccC
Confidence 46999999999999988 55 245553 5999999775 788999999999999987765 45542 222
Q ss_pred CcccchhcccccccccceeeeecccCCCh
Q 002218 656 DSARTFSLLSSRACCLEYHITLLRVTEPP 684 (952)
Q Consensus 656 ~~~~DiSlLs~d~~~LEyyI~LL~v~ep~ 684 (952)
........++.... +.|++.+.....+.
T Consensus 227 ~~g~~~~~ip~~~~-l~y~~~l~~~~~A~ 254 (457)
T 1kt0_A 227 EAGKPKFGIEPNAE-LIYEVTLKSFEKAK 254 (457)
T ss_dssp SSCBGGGTBCTTCC-EEEEEEEEEEECCC
T ss_pred CCCCcccCCCCCCE-EEEEhhhhhcccCc
Confidence 22221112333333 66777666554443
No 465
>2ae2_A Protein (tropinone reductase-II); oxidoreductase, tropane alkaloid biosynthesis, reduction of tropinone to pseudotropine; HET: NAP PTO; 1.90A {Datura stramonium} SCOP: c.2.1.2 PDB: 2ae1_A* 1ipe_A* 1ipf_A*
Probab=32.73 E-value=1.1e+02 Score=30.98 Aligned_cols=76 Identities=13% Similarity=0.035 Sum_probs=52.0
Q ss_pred CCCEEEEEcCccch---HHHHHhcCCCCCceEEEEeCChHHHHHHHHHHhhhhhcccccCCCCCCCccEEEEEcCccccC
Q 002218 713 CATTLVDFGCGSGS---LLDSLLDYPTALEKIVGVDISQKSLSRAAKIIHSKLSKKLDAAVPCTDVKSAVLFDGSITVFD 789 (952)
Q Consensus 713 k~krVLDIGCGeG~---ll~~LAr~g~~~~qVVGVDISeemLe~ArkrLsa~la~~~~~l~Pr~~~~nVtf~qGDa~dLp 789 (952)
.++++|=.|.+.|. ++..|++.| .+|+.+|.+++.++...+.+.. ...++.++.+|+.+..
T Consensus 8 ~~k~vlVTGas~giG~~ia~~l~~~G---~~V~~~~r~~~~~~~~~~~~~~-------------~~~~~~~~~~D~~~~~ 71 (260)
T 2ae2_A 8 EGCTALVTGGSRGIGYGIVEELASLG---ASVYTCSRNQKELNDCLTQWRS-------------KGFKVEASVCDLSSRS 71 (260)
T ss_dssp TTCEEEEESCSSHHHHHHHHHHHHTT---CEEEEEESCHHHHHHHHHHHHH-------------TTCEEEEEECCTTCHH
T ss_pred CCCEEEEECCCcHHHHHHHHHHHHCC---CEEEEEeCCHHHHHHHHHHHHh-------------cCCcEEEEEcCCCCHH
Confidence 56789999976553 345677777 7999999998877665544431 1136788899987743
Q ss_pred C----------CC-CCccEEEEcccc
Q 002218 790 S----------RL-HGFDIGTCLEVI 804 (952)
Q Consensus 790 f----------~d-~sFDVVVcieVI 804 (952)
. .. +..|+++..-.+
T Consensus 72 ~~~~~~~~~~~~~~g~id~lv~~Ag~ 97 (260)
T 2ae2_A 72 ERQELMNTVANHFHGKLNILVNNAGI 97 (260)
T ss_dssp HHHHHHHHHHHHTTTCCCEEEECCCC
T ss_pred HHHHHHHHHHHHcCCCCCEEEECCCC
Confidence 1 11 578999986543
No 466
>1y1p_A ARII, aldehyde reductase II; rossmann fold, short chain dehydrogenase reductase, oxidoreductase; HET: NMN AMP; 1.60A {Sporidiobolus salmonicolor} SCOP: c.2.1.2 PDB: 1ujm_A* 1zze_A
Probab=32.70 E-value=2.8e+02 Score=28.28 Aligned_cols=79 Identities=14% Similarity=0.069 Sum_probs=49.5
Q ss_pred CCCEEEEEcCccchHH----HHHhcCCCCCceEEEEeCChHHHHHHHHHHhhhhhcccccCCCCCCCccEEEE-EcCccc
Q 002218 713 CATTLVDFGCGSGSLL----DSLLDYPTALEKIVGVDISQKSLSRAAKIIHSKLSKKLDAAVPCTDVKSAVLF-DGSITV 787 (952)
Q Consensus 713 k~krVLDIGCGeG~ll----~~LAr~g~~~~qVVGVDISeemLe~ArkrLsa~la~~~~~l~Pr~~~~nVtf~-qGDa~d 787 (952)
.+++||=.|+. |.++ ..|++.| .+|++++.+....+...+.+... ...+++++ .+|+.+
T Consensus 10 ~~~~vlVTGat-G~iG~~l~~~L~~~g---~~V~~~~r~~~~~~~~~~~~~~~------------~~~~~~~~~~~D~~d 73 (342)
T 1y1p_A 10 EGSLVLVTGAN-GFVASHVVEQLLEHG---YKVRGTARSASKLANLQKRWDAK------------YPGRFETAVVEDMLK 73 (342)
T ss_dssp TTCEEEEETTT-SHHHHHHHHHHHHTT---CEEEEEESSHHHHHHHHHHHHHH------------STTTEEEEECSCTTS
T ss_pred CCCEEEEECCc-cHHHHHHHHHHHHCC---CEEEEEeCCcccHHHHHHHhhcc------------CCCceEEEEecCCcC
Confidence 56789998863 4433 4556666 79999999887655443332210 01367888 789876
Q ss_pred cCC---CCCCccEEEEccccccC
Q 002218 788 FDS---RLHGFDIGTCLEVIEHM 807 (952)
Q Consensus 788 Lpf---~d~sFDVVVcieVIEHL 807 (952)
... ....+|+|+..-..-+.
T Consensus 74 ~~~~~~~~~~~d~vih~A~~~~~ 96 (342)
T 1y1p_A 74 QGAYDEVIKGAAGVAHIASVVSF 96 (342)
T ss_dssp TTTTTTTTTTCSEEEECCCCCSC
T ss_pred hHHHHHHHcCCCEEEEeCCCCCC
Confidence 542 12368999987655443
No 467
>1v3u_A Leukotriene B4 12- hydroxydehydrogenase/prostaglandin 15-keto reductase; rossmann fold, riken structural genomics/proteomics initiative, RSGI; 2.00A {Cavia porcellus} SCOP: b.35.1.2 c.2.1.1 PDB: 1v3t_A 1v3v_A* 2dm6_A* 1zsv_A 2y05_A*
Probab=32.52 E-value=46 Score=35.06 Aligned_cols=47 Identities=15% Similarity=0.155 Sum_probs=34.9
Q ss_pred HHhhcCCCCEEEEEcC--ccchHHHHHhcCCCCCceEEEEeCChHHHHHHH
Q 002218 707 QHIKESCATTLVDFGC--GSGSLLDSLLDYPTALEKIVGVDISQKSLSRAA 755 (952)
Q Consensus 707 dlL~~~k~krVLDIGC--GeG~ll~~LAr~g~~~~qVVGVDISeemLe~Ar 755 (952)
+.....++++||-.|+ |.|..+..+++..+ .+|+++|.+++.++.++
T Consensus 139 ~~~~~~~g~~vlV~Ga~ggiG~~~~~~~~~~G--~~V~~~~~~~~~~~~~~ 187 (333)
T 1v3u_A 139 EVCGVKGGETVLVSAAAGAVGSVVGQIAKLKG--CKVVGAAGSDEKIAYLK 187 (333)
T ss_dssp TTSCCCSSCEEEEESTTBHHHHHHHHHHHHTT--CEEEEEESSHHHHHHHH
T ss_pred HhhCCCCCCEEEEecCCCcHHHHHHHHHHHCC--CEEEEEeCCHHHHHHHH
Confidence 4444557789999998 56777766665332 79999999998888773
No 468
>2cf5_A Atccad5, CAD, cinnamyl alcohol dehydrogenase; lignin biosynthesis, metal-binding, NADP, oxidoreductase, zinc; 2.0A {Arabidopsis thaliana} PDB: 2cf6_A*
Probab=32.27 E-value=35 Score=36.59 Aligned_cols=45 Identities=13% Similarity=0.011 Sum_probs=33.9
Q ss_pred hhcC-CCCEEEEEcCc-cchHHHHHhcCCCCCceEEEEeCChHHHHHHH
Q 002218 709 IKES-CATTLVDFGCG-SGSLLDSLLDYPTALEKIVGVDISQKSLSRAA 755 (952)
Q Consensus 709 L~~~-k~krVLDIGCG-eG~ll~~LAr~g~~~~qVVGVDISeemLe~Ar 755 (952)
.... ++.+||-+|+| -|.++..+++..+ .+|+++|.+++-++.++
T Consensus 175 ~~~~~~g~~VlV~GaG~vG~~a~qlak~~G--a~Vi~~~~~~~~~~~~~ 221 (357)
T 2cf5_A 175 FGLKQPGLRGGILGLGGVGHMGVKIAKAMG--HHVTVISSSNKKREEAL 221 (357)
T ss_dssp TSTTSTTCEEEEECCSHHHHHHHHHHHHHT--CEEEEEESSTTHHHHHH
T ss_pred cCCCCCCCEEEEECCCHHHHHHHHHHHHCC--CeEEEEeCChHHHHHHH
Confidence 3444 67899999987 4667777776543 68999999998877775
No 469
>3e8x_A Putative NAD-dependent epimerase/dehydratase; structural genomics, APC7755, NADP, P protein structure initiative; HET: MSE NAP; 2.10A {Bacillus halodurans}
Probab=32.26 E-value=97 Score=30.48 Aligned_cols=72 Identities=11% Similarity=0.083 Sum_probs=46.5
Q ss_pred CCCCEEEEEcCcc--ch-HHHHHhcCCCCCceEEEEeCChHHHHHHHHHHhhhhhcccccCCCCCCCccE-EEEEcCcc-
Q 002218 712 SCATTLVDFGCGS--GS-LLDSLLDYPTALEKIVGVDISQKSLSRAAKIIHSKLSKKLDAAVPCTDVKSA-VLFDGSIT- 786 (952)
Q Consensus 712 ~k~krVLDIGCGe--G~-ll~~LAr~g~~~~qVVGVDISeemLe~ArkrLsa~la~~~~~l~Pr~~~~nV-tf~qGDa~- 786 (952)
..+++||=.|+.. |. ++..|++.| .+|++++-+++.++.... .++ +++.+|+.
T Consensus 19 l~~~~ilVtGatG~iG~~l~~~L~~~G---~~V~~~~R~~~~~~~~~~-------------------~~~~~~~~~Dl~~ 76 (236)
T 3e8x_A 19 FQGMRVLVVGANGKVARYLLSELKNKG---HEPVAMVRNEEQGPELRE-------------------RGASDIVVANLEE 76 (236)
T ss_dssp --CCEEEEETTTSHHHHHHHHHHHHTT---CEEEEEESSGGGHHHHHH-------------------TTCSEEEECCTTS
T ss_pred cCCCeEEEECCCChHHHHHHHHHHhCC---CeEEEEECChHHHHHHHh-------------------CCCceEEEcccHH
Confidence 3578999999632 32 335566666 799999998876544321 156 78888886
Q ss_pred ccCCCCCCccEEEEccccc
Q 002218 787 VFDSRLHGFDIGTCLEVIE 805 (952)
Q Consensus 787 dLpf~d~sFDVVVcieVIE 805 (952)
.+.....+.|+|+..-...
T Consensus 77 ~~~~~~~~~D~vi~~ag~~ 95 (236)
T 3e8x_A 77 DFSHAFASIDAVVFAAGSG 95 (236)
T ss_dssp CCGGGGTTCSEEEECCCCC
T ss_pred HHHHHHcCCCEEEECCCCC
Confidence 2222345799999876543
No 470
>4da9_A Short-chain dehydrogenase/reductase; structural genomics, protein structure initiative, PSI-biology; 2.50A {Sinorhizobium meliloti}
Probab=32.23 E-value=1.3e+02 Score=30.96 Aligned_cols=80 Identities=10% Similarity=0.067 Sum_probs=54.4
Q ss_pred hhcCCCCEEEEEcCccch---HHHHHhcCCCCCceEEEEeC-ChHHHHHHHHHHhhhhhcccccCCCCCCCccEEEEEcC
Q 002218 709 IKESCATTLVDFGCGSGS---LLDSLLDYPTALEKIVGVDI-SQKSLSRAAKIIHSKLSKKLDAAVPCTDVKSAVLFDGS 784 (952)
Q Consensus 709 L~~~k~krVLDIGCGeG~---ll~~LAr~g~~~~qVVGVDI-SeemLe~ArkrLsa~la~~~~~l~Pr~~~~nVtf~qGD 784 (952)
.....++++|=.|++.|. ++..|++.| .+|+.+|. +++.++...+.+.. ...++.++++|
T Consensus 24 m~~~~~k~~lVTGas~GIG~aia~~la~~G---~~V~~~~~~~~~~~~~~~~~~~~-------------~~~~~~~~~~D 87 (280)
T 4da9_A 24 MTQKARPVAIVTGGRRGIGLGIARALAASG---FDIAITGIGDAEGVAPVIAELSG-------------LGARVIFLRAD 87 (280)
T ss_dssp CSCCCCCEEEEETTTSHHHHHHHHHHHHTT---CEEEEEESCCHHHHHHHHHHHHH-------------TTCCEEEEECC
T ss_pred hhccCCCEEEEecCCCHHHHHHHHHHHHCC---CeEEEEeCCCHHHHHHHHHHHHh-------------cCCcEEEEEec
Confidence 344567889999987664 456777887 79999996 66666665554432 12368899999
Q ss_pred ccccCC----------CCCCccEEEEcccc
Q 002218 785 ITVFDS----------RLHGFDIGTCLEVI 804 (952)
Q Consensus 785 a~dLpf----------~d~sFDVVVcieVI 804 (952)
+.+... ..+..|+++..-.+
T Consensus 88 v~d~~~v~~~~~~~~~~~g~iD~lvnnAg~ 117 (280)
T 4da9_A 88 LADLSSHQATVDAVVAEFGRIDCLVNNAGI 117 (280)
T ss_dssp TTSGGGHHHHHHHHHHHHSCCCEEEEECC-
T ss_pred CCCHHHHHHHHHHHHHHcCCCCEEEECCCc
Confidence 987542 12478999886554
No 471
>3abi_A Putative uncharacterized protein PH1688; L-lysine dehydrogenase, oxidoreductase; HET: NAD; 2.44A {Pyrococcus horikoshii}
Probab=32.19 E-value=17 Score=39.33 Aligned_cols=66 Identities=15% Similarity=0.180 Sum_probs=40.2
Q ss_pred CCCEEEEEcCc-cchHHHHHhcCCCCCceEEEEeCChHHHHHHHHHHhhhhhcccccCCCCCCCccEEEEEcCccccC--
Q 002218 713 CATTLVDFGCG-SGSLLDSLLDYPTALEKIVGVDISQKSLSRAAKIIHSKLSKKLDAAVPCTDVKSAVLFDGSITVFD-- 789 (952)
Q Consensus 713 k~krVLDIGCG-eG~ll~~LAr~g~~~~qVVGVDISeemLe~ArkrLsa~la~~~~~l~Pr~~~~nVtf~qGDa~dLp-- 789 (952)
+.++||=|||| .|.......... .+|+..|++.+.++.+++ .+..+..|+.+.+
T Consensus 15 ~~mkilvlGaG~vG~~~~~~L~~~---~~v~~~~~~~~~~~~~~~--------------------~~~~~~~d~~d~~~l 71 (365)
T 3abi_A 15 RHMKVLILGAGNIGRAIAWDLKDE---FDVYIGDVNNENLEKVKE--------------------FATPLKVDASNFDKL 71 (365)
T ss_dssp -CCEEEEECCSHHHHHHHHHHTTT---SEEEEEESCHHHHHHHTT--------------------TSEEEECCTTCHHHH
T ss_pred CccEEEEECCCHHHHHHHHHHhcC---CCeEEEEcCHHHHHHHhc--------------------cCCcEEEecCCHHHH
Confidence 45789999997 455443333333 689999999887766532 1233445654432
Q ss_pred -CCCCCccEEEEc
Q 002218 790 -SRLHGFDIGTCL 801 (952)
Q Consensus 790 -f~d~sFDVVVci 801 (952)
....++|+|++.
T Consensus 72 ~~~~~~~DvVi~~ 84 (365)
T 3abi_A 72 VEVMKEFELVIGA 84 (365)
T ss_dssp HHHHTTCSEEEEC
T ss_pred HHHHhCCCEEEEe
Confidence 123578998874
No 472
>3zwc_A Peroxisomal bifunctional enzyme; beta oxidation pathway, oxidoreductase, lipid metabolism, LY isomerase, peroxisome, fatty acid metabolism; HET: NAD HSC; 2.30A {Rattus norvegicus} PDB: 3zw9_A* 3zw8_A* 3zwa_A* 3zwb_A* 2x58_A*
Probab=32.06 E-value=6.1e+02 Score=30.67 Aligned_cols=162 Identities=17% Similarity=0.151 Sum_probs=85.2
Q ss_pred CCEEEEEcCccch--HHHHHhcCCCCCceEEEEeCChHHHHHHHHHHhhhhhccccc--CCC-CCCCccEEEEEcCcccc
Q 002218 714 ATTLVDFGCGSGS--LLDSLLDYPTALEKIVGVDISQKSLSRAAKIIHSKLSKKLDA--AVP-CTDVKSAVLFDGSITVF 788 (952)
Q Consensus 714 ~krVLDIGCGeG~--ll~~LAr~g~~~~qVVGVDISeemLe~ArkrLsa~la~~~~~--l~P-r~~~~nVtf~qGDa~dL 788 (952)
-++|-=||+|.-. .+..++..| ..|+-+|++++.++.+++.+...+...... ... ......+++ ..+..+
T Consensus 316 i~~v~ViGaG~MG~gIA~~~a~aG---~~V~l~D~~~~~l~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~-~~~~~~- 390 (742)
T 3zwc_A 316 VSSVGVLGLGTMGRGIAISFARVG---ISVVAVESDPKQLDAAKKIITFTLEKEASRAHQNGQASAKPKLRF-SSSTKE- 390 (742)
T ss_dssp CCEEEEECCSHHHHHHHHHHHTTT---CEEEEECSSHHHHHHHHHHHHHHHHHHHHHHHTTTCCCCCCCEEE-ESCGGG-
T ss_pred ccEEEEEcccHHHHHHHHHHHhCC---CchhcccchHhhhhhHHHHHHHHHHHHHHhccccchhhhhhhhcc-cCcHHH-
Confidence 3689999999743 445667777 899999999999998887665433221000 000 111112332 223332
Q ss_pred CCCCCCccEEEEccccccCChhHHHHHHHHHHHccCCCEEEEE-ecCCchhHHHHhhccCccCCCCcchhhhccccccCC
Q 002218 789 DSRLHGFDIGTCLEVIEHMEEDEASQFGNIVLSSFRPRILIVS-TPNYEYNAILQKSSSTIQEDDPDEKTQLQSCKFRNH 867 (952)
Q Consensus 789 pf~d~sFDVVVcieVIEHL~dD~l~~L~eeI~RvLKPG~LIIS-TPN~efN~lf~~L~~~ta~eYPde~~g~~~~~fRh~ 867 (952)
....|+|+=. |.|.+. ..+.+.+++-.+++|+.++-| |-...-..+-... ..|..-. ...|-++
T Consensus 391 ---l~~aDlVIEA-V~E~l~--iK~~vf~~le~~~~~~aIlASNTSsl~i~~ia~~~------~~p~r~i---g~HFfnP 455 (742)
T 3zwc_A 391 ---LSTVDLVVEA-VFEDMN--LKKKVFAELSALCKPGAFLCTNTSALNVDDIASST------DRPQLVI---GTHFFSP 455 (742)
T ss_dssp ---GGSCSEEEEC-CCSCHH--HHHHHHHHHHHHSCTTCEEEECCSSSCHHHHHTTS------SCGGGEE---EEECCSS
T ss_pred ---HhhCCEEEEe-ccccHH--HHHHHHHHHhhcCCCCceEEecCCcCChHHHHhhc------CCccccc---cccccCC
Confidence 2456776532 445543 334455679999999955444 2222222222211 1111101 1112223
Q ss_pred CCc--------cccCHHHHHHHHHHHHHHcCcEEEE
Q 002218 868 DHK--------FEWTRDQFNCWATELAARHNYSVEF 895 (952)
Q Consensus 868 DHk--------FEWTReEFqsWae~La~q~GYsVef 895 (952)
-|. -..|..+....+..++++.|-....
T Consensus 456 ~~~m~LVEvi~g~~Ts~e~~~~~~~~~~~lgK~pV~ 491 (742)
T 3zwc_A 456 AHVMRLLEVIPSRYSSPTTIATVMSLSKKIGKIGVV 491 (742)
T ss_dssp TTTCCEEEEEECSSCCHHHHHHHHHHHHHTTCEEEE
T ss_pred CCCCceEEEecCCCCCHHHHHHHHHHHHHhCCCCcc
Confidence 232 2356666666777788887765543
No 473
>2jhf_A Alcohol dehydrogenase E chain; oxidoreductase, metal coordination, NAD, zinc, inhibition, acetylation, metal-binding; HET: NAD; 1.0A {Equus caballus} SCOP: b.35.1.2 c.2.1.1 PDB: 1adc_A* 1adf_A* 1adg_A* 1adb_A* 1bto_A* 1heu_A* 1hf3_A* 1hld_A* 1lde_A* 1ldy_A* 1mg0_A* 1n92_A* 1p1r_A* 1ye3_A 1het_A* 2jhg_A* 2ohx_A* 2oxi_A* 3bto_A* 4dwv_A* ...
Probab=32.02 E-value=44 Score=35.99 Aligned_cols=48 Identities=25% Similarity=0.345 Sum_probs=36.7
Q ss_pred HHhhcCCCCEEEEEcCcc-chHHHHHhcCCCCCc-eEEEEeCChHHHHHHHH
Q 002218 707 QHIKESCATTLVDFGCGS-GSLLDSLLDYPTALE-KIVGVDISQKSLSRAAK 756 (952)
Q Consensus 707 dlL~~~k~krVLDIGCGe-G~ll~~LAr~g~~~~-qVVGVDISeemLe~Ark 756 (952)
+.....++.+||-+|+|. |.++..+++..+ . +|+++|.+++.++.+++
T Consensus 185 ~~~~~~~g~~VlV~GaG~vG~~a~qla~~~G--a~~Vi~~~~~~~~~~~~~~ 234 (374)
T 2jhf_A 185 KVAKVTQGSTCAVFGLGGVGLSVIMGCKAAG--AARIIGVDINKDKFAKAKE 234 (374)
T ss_dssp TTTCCCTTCEEEEECCSHHHHHHHHHHHHTT--CSEEEEECSCGGGHHHHHH
T ss_pred hccCCCCCCEEEEECCCHHHHHHHHHHHHcC--CCeEEEEcCCHHHHHHHHH
Confidence 344455778999999875 777777776542 5 89999999998888854
No 474
>2vhw_A Alanine dehydrogenase; NAD, secreted, oxidoreductase; HET: NAI; 2.0A {Mycobacterium tuberculosis} PDB: 2vhx_A* 2vhy_A 2vhz_A* 2vhv_A* 2voe_A 2voj_A*
Probab=32.02 E-value=48 Score=36.39 Aligned_cols=43 Identities=16% Similarity=0.190 Sum_probs=30.7
Q ss_pred CCCCEEEEEcCcc-chHHHHH-hcCCCCCceEEEEeCChHHHHHHHHH
Q 002218 712 SCATTLVDFGCGS-GSLLDSL-LDYPTALEKIVGVDISQKSLSRAAKI 757 (952)
Q Consensus 712 ~k~krVLDIGCGe-G~ll~~L-Ar~g~~~~qVVGVDISeemLe~Arkr 757 (952)
..+++|+=+|+|. |..+..+ ...| .+|+++|.+++.++.+++.
T Consensus 166 l~g~~V~ViG~G~iG~~~a~~a~~~G---a~V~~~d~~~~~l~~~~~~ 210 (377)
T 2vhw_A 166 VEPADVVVIGAGTAGYNAARIANGMG---ATVTVLDINIDKLRQLDAE 210 (377)
T ss_dssp BCCCEEEEECCSHHHHHHHHHHHHTT---CEEEEEESCHHHHHHHHHH
T ss_pred CCCCEEEEECCCHHHHHHHHHHHhCC---CEEEEEeCCHHHHHHHHHh
Confidence 4678999999973 4433333 3455 6999999999888777553
No 475
>2wsb_A Galactitol dehydrogenase; oxidoreductase, SDR, rossmann fold, tagatose; HET: NAD; 1.25A {Rhodobacter sphaeroides} PDB: 2wdz_A* 3lqf_A*
Probab=31.80 E-value=1.1e+02 Score=30.42 Aligned_cols=73 Identities=16% Similarity=0.149 Sum_probs=49.0
Q ss_pred CCCEEEEEcCccch---HHHHHhcCCCCCceEEEEeCChHHHHHHHHHHhhhhhcccccCCCCCCCccE-EEEEcCcccc
Q 002218 713 CATTLVDFGCGSGS---LLDSLLDYPTALEKIVGVDISQKSLSRAAKIIHSKLSKKLDAAVPCTDVKSA-VLFDGSITVF 788 (952)
Q Consensus 713 k~krVLDIGCGeG~---ll~~LAr~g~~~~qVVGVDISeemLe~ArkrLsa~la~~~~~l~Pr~~~~nV-tf~qGDa~dL 788 (952)
.+++||=.|++.|. ++..|++.| .+|+++|.+++.++...+.+. .++ .++.+|+.+.
T Consensus 10 ~~k~vlITGasggiG~~la~~l~~~G---~~V~~~~r~~~~~~~~~~~~~----------------~~~~~~~~~D~~~~ 70 (254)
T 2wsb_A 10 DGACAAVTGAGSGIGLEICRAFAASG---ARLILIDREAAALDRAAQELG----------------AAVAARIVADVTDA 70 (254)
T ss_dssp TTCEEEEETTTSHHHHHHHHHHHHTT---CEEEEEESCHHHHHHHHHHHG----------------GGEEEEEECCTTCH
T ss_pred CCCEEEEECCCcHHHHHHHHHHHHCC---CEEEEEeCCHHHHHHHHHHhc----------------ccceeEEEEecCCH
Confidence 56789989976542 345666777 799999999877665544321 145 7888898764
Q ss_pred CCC---------CCCccEEEEcccc
Q 002218 789 DSR---------LHGFDIGTCLEVI 804 (952)
Q Consensus 789 pf~---------d~sFDVVVcieVI 804 (952)
..- .+.+|+++..-.+
T Consensus 71 ~~~~~~~~~~~~~~~id~li~~Ag~ 95 (254)
T 2wsb_A 71 EAMTAAAAEAEAVAPVSILVNSAGI 95 (254)
T ss_dssp HHHHHHHHHHHHHSCCCEEEECCCC
T ss_pred HHHHHHHHHHHhhCCCcEEEECCcc
Confidence 321 1468999986543
No 476
>2cdc_A Glucose dehydrogenase glucose 1-dehydrogenase, DHG-1; reductase, oxidoreductase, MDR family; HET: XYS XYP NAP; 1.50A {Sulfolobus solfataricus} PDB: 2cdb_A* 2cd9_A 2cda_A*
Probab=31.59 E-value=1.1e+02 Score=32.76 Aligned_cols=41 Identities=12% Similarity=0.140 Sum_probs=30.5
Q ss_pred CCEEEEEcCcc-chHHHHHhcCCCCCceEEEEeCCh---HHHHHHHH
Q 002218 714 ATTLVDFGCGS-GSLLDSLLDYPTALEKIVGVDISQ---KSLSRAAK 756 (952)
Q Consensus 714 ~krVLDIGCGe-G~ll~~LAr~g~~~~qVVGVDISe---emLe~Ark 756 (952)
+++||-+|+|. |.++..+++..+ .+|+++|.++ +-++.+++
T Consensus 181 g~~VlV~GaG~vG~~~~q~a~~~G--a~Vi~~~~~~~~~~~~~~~~~ 225 (366)
T 2cdc_A 181 CRKVLVVGTGPIGVLFTLLFRTYG--LEVWMANRREPTEVEQTVIEE 225 (366)
T ss_dssp TCEEEEESCHHHHHHHHHHHHHHT--CEEEEEESSCCCHHHHHHHHH
T ss_pred CCEEEEECCCHHHHHHHHHHHhCC--CEEEEEeCCccchHHHHHHHH
Confidence 88999999853 666666665432 6999999988 77777653
No 477
>2cfc_A 2-(R)-hydroxypropyl-COM dehydrogenase; NAD, oxidoreductase; HET: NAD KPC; 1.8A {Xanthobacter autotrophicus}
Probab=31.43 E-value=1.7e+02 Score=28.87 Aligned_cols=75 Identities=12% Similarity=0.196 Sum_probs=48.8
Q ss_pred CCEEEEEcCccch---HHHHHhcCCCCCceEEEEeCChHHHHHHHHHHhhhhhcccccCCCCCCCccEEEEEcCccccCC
Q 002218 714 ATTLVDFGCGSGS---LLDSLLDYPTALEKIVGVDISQKSLSRAAKIIHSKLSKKLDAAVPCTDVKSAVLFDGSITVFDS 790 (952)
Q Consensus 714 ~krVLDIGCGeG~---ll~~LAr~g~~~~qVVGVDISeemLe~ArkrLsa~la~~~~~l~Pr~~~~nVtf~qGDa~dLpf 790 (952)
++++|=.|++.|. ++..|++.| .+|+.+|.+++.++...+.+.. ....++.++.+|+.+...
T Consensus 2 ~k~vlItGasggiG~~~a~~l~~~G---~~V~~~~r~~~~~~~~~~~~~~------------~~~~~~~~~~~D~~~~~~ 66 (250)
T 2cfc_A 2 SRVAIVTGASSGNGLAIATRFLARG---DRVAALDLSAETLEETARTHWH------------AYADKVLRVRADVADEGD 66 (250)
T ss_dssp CCEEEEETTTSHHHHHHHHHHHHTT---CEEEEEESCHHHHHHHHHHHST------------TTGGGEEEEECCTTCHHH
T ss_pred CCEEEEeCCCchHHHHHHHHHHHCC---CEEEEEeCCHHHHHHHHHHHHH------------hcCCcEEEEEecCCCHHH
Confidence 4678888876442 345666777 7899999998777665443310 112368899999877432
Q ss_pred ----------CCCCccEEEEccc
Q 002218 791 ----------RLHGFDIGTCLEV 803 (952)
Q Consensus 791 ----------~d~sFDVVVcieV 803 (952)
..+.+|+++..-.
T Consensus 67 ~~~~~~~~~~~~~~id~li~~Ag 89 (250)
T 2cfc_A 67 VNAAIAATMEQFGAIDVLVNNAG 89 (250)
T ss_dssp HHHHHHHHHHHHSCCCEEEECCC
T ss_pred HHHHHHHHHHHhCCCCEEEECCC
Confidence 0136899998654
No 478
>1pjc_A Protein (L-alanine dehydrogenase); oxidoreductase, NAD; HET: NAD; 2.00A {Phormidium lapideum} SCOP: c.2.1.4 c.23.12.2 PDB: 1pjb_A* 1say_A
Probab=30.81 E-value=71 Score=34.75 Aligned_cols=42 Identities=19% Similarity=0.224 Sum_probs=30.4
Q ss_pred CCCEEEEEcCcc-chHHHHHh-cCCCCCceEEEEeCChHHHHHHHHH
Q 002218 713 CATTLVDFGCGS-GSLLDSLL-DYPTALEKIVGVDISQKSLSRAAKI 757 (952)
Q Consensus 713 k~krVLDIGCGe-G~ll~~LA-r~g~~~~qVVGVDISeemLe~Arkr 757 (952)
++++|+=+|+|. |..+..++ ..| .+|+++|.+++-++.+++.
T Consensus 166 ~~~~VlViGaGgvG~~aa~~a~~~G---a~V~v~dr~~~r~~~~~~~ 209 (361)
T 1pjc_A 166 KPGKVVILGGGVVGTEAAKMAVGLG---AQVQIFDINVERLSYLETL 209 (361)
T ss_dssp CCCEEEEECCSHHHHHHHHHHHHTT---CEEEEEESCHHHHHHHHHH
T ss_pred CCCEEEEECCCHHHHHHHHHHHhCC---CEEEEEeCCHHHHHHHHHh
Confidence 458999999973 44444333 455 5999999999888877654
No 479
>1p0f_A NADP-dependent alcohol dehydrogenase; ADH topology, NADP(H)-dependent, oxidoreductase; HET: NAP; 1.80A {Rana perezi} SCOP: b.35.1.2 c.2.1.1 PDB: 1p0c_A*
Probab=30.59 E-value=39 Score=36.38 Aligned_cols=50 Identities=22% Similarity=0.263 Sum_probs=37.5
Q ss_pred HHHHhhcCCCCEEEEEcCcc-chHHHHHhcCCCCCc-eEEEEeCChHHHHHHHH
Q 002218 705 ALQHIKESCATTLVDFGCGS-GSLLDSLLDYPTALE-KIVGVDISQKSLSRAAK 756 (952)
Q Consensus 705 VldlL~~~k~krVLDIGCGe-G~ll~~LAr~g~~~~-qVVGVDISeemLe~Ark 756 (952)
+.+.....++.+||-+|+|. |.++..+++..+ . +|+++|.+++-++.+++
T Consensus 183 l~~~~~~~~g~~VlV~GaG~vG~~aiqlak~~G--a~~Vi~~~~~~~~~~~a~~ 234 (373)
T 1p0f_A 183 AVNTAKVTPGSTCAVFGLGGVGFSAIVGCKAAG--ASRIIGVGTHKDKFPKAIE 234 (373)
T ss_dssp HHTTTCCCTTCEEEEECCSHHHHHHHHHHHHHT--CSEEEEECSCGGGHHHHHH
T ss_pred HHhccCCCCCCEEEEECCCHHHHHHHHHHHHcC--CCeEEEECCCHHHHHHHHH
Confidence 33444555778999999874 777777777532 4 89999999998888864
No 480
>1e3i_A Alcohol dehydrogenase, class II; HET: NAD; 2.08A {Mus musculus} SCOP: b.35.1.2 c.2.1.1 PDB: 1e3e_A* 1e3l_A* 3cos_A*
Probab=30.39 E-value=47 Score=35.76 Aligned_cols=50 Identities=22% Similarity=0.283 Sum_probs=37.4
Q ss_pred HHHHhhcCCCCEEEEEcCcc-chHHHHHhcCCCCCc-eEEEEeCChHHHHHHHH
Q 002218 705 ALQHIKESCATTLVDFGCGS-GSLLDSLLDYPTALE-KIVGVDISQKSLSRAAK 756 (952)
Q Consensus 705 VldlL~~~k~krVLDIGCGe-G~ll~~LAr~g~~~~-qVVGVDISeemLe~Ark 756 (952)
+.+.....++.+||-+|+|. |.++..+++..+ . +|+++|.+++-++.+++
T Consensus 187 l~~~~~~~~g~~VlV~GaG~vG~~aiqlak~~G--a~~Vi~~~~~~~~~~~a~~ 238 (376)
T 1e3i_A 187 AINTAKVTPGSTCAVFGLGCVGLSAIIGCKIAG--ASRIIAIDINGEKFPKAKA 238 (376)
T ss_dssp HHTTSCCCTTCEEEEECCSHHHHHHHHHHHHTT--CSEEEEECSCGGGHHHHHH
T ss_pred HHHhcCCCCCCEEEEECCCHHHHHHHHHHHHcC--CCeEEEEcCCHHHHHHHHH
Confidence 33444455778999999874 777777777542 5 89999999998888854
No 481
>1ae1_A Tropinone reductase-I; oxidoreductase, tropane alkaloid biosynthesis, reduction of tropinone to tropine, short-chain dehydrogenase; HET: NAP; 2.40A {Datura stramonium} SCOP: c.2.1.2
Probab=30.27 E-value=1.2e+02 Score=30.87 Aligned_cols=76 Identities=12% Similarity=0.044 Sum_probs=52.2
Q ss_pred CCCEEEEEcCccch---HHHHHhcCCCCCceEEEEeCChHHHHHHHHHHhhhhhcccccCCCCCCCccEEEEEcCccccC
Q 002218 713 CATTLVDFGCGSGS---LLDSLLDYPTALEKIVGVDISQKSLSRAAKIIHSKLSKKLDAAVPCTDVKSAVLFDGSITVFD 789 (952)
Q Consensus 713 k~krVLDIGCGeG~---ll~~LAr~g~~~~qVVGVDISeemLe~ArkrLsa~la~~~~~l~Pr~~~~nVtf~qGDa~dLp 789 (952)
.++++|=.|++.|. ++..|++.| .+|+.+|.+++.++...+.+.. ...++.++.+|+.+..
T Consensus 20 ~~k~vlVTGas~gIG~aia~~l~~~G---~~V~~~~r~~~~~~~~~~~~~~-------------~~~~~~~~~~D~~~~~ 83 (273)
T 1ae1_A 20 KGTTALVTGGSKGIGYAIVEELAGLG---ARVYTCSRNEKELDECLEIWRE-------------KGLNVEGSVCDLLSRT 83 (273)
T ss_dssp TTCEEEEESCSSHHHHHHHHHHHHTT---CEEEEEESCHHHHHHHHHHHHH-------------TTCCEEEEECCTTCHH
T ss_pred CCCEEEEECCcchHHHHHHHHHHHCC---CEEEEEeCCHHHHHHHHHHHHh-------------cCCceEEEECCCCCHH
Confidence 56889999976553 345667777 7999999998877666554431 1136788899987643
Q ss_pred C----------CC-CCccEEEEcccc
Q 002218 790 S----------RL-HGFDIGTCLEVI 804 (952)
Q Consensus 790 f----------~d-~sFDVVVcieVI 804 (952)
. .. +..|+++..-.+
T Consensus 84 ~~~~~~~~~~~~~~g~id~lv~nAg~ 109 (273)
T 1ae1_A 84 ERDKLMQTVAHVFDGKLNILVNNAGV 109 (273)
T ss_dssp HHHHHHHHHHHHTTSCCCEEEECCCC
T ss_pred HHHHHHHHHHHHcCCCCcEEEECCCC
Confidence 1 11 678999986544
No 482
>3nx4_A Putative oxidoreductase; csgid, structural genomics, center for struc genomics of infectious diseases, PSI, protein structure INI; HET: MSE NAP; 1.90A {Salmonella enterica subsp} PDB: 1o89_A 1o8c_A*
Probab=30.22 E-value=82 Score=32.91 Aligned_cols=39 Identities=21% Similarity=0.175 Sum_probs=32.2
Q ss_pred EEEEEcC--ccchHHHHHhcCCCCCceEEEEeCChHHHHHHHH
Q 002218 716 TLVDFGC--GSGSLLDSLLDYPTALEKIVGVDISQKSLSRAAK 756 (952)
Q Consensus 716 rVLDIGC--GeG~ll~~LAr~g~~~~qVVGVDISeemLe~Ark 756 (952)
+||=+|+ |.|.++..+++..+ .+|+++|.+++-++.+++
T Consensus 149 ~VlV~Ga~G~vG~~aiqla~~~G--a~Vi~~~~~~~~~~~~~~ 189 (324)
T 3nx4_A 149 EVVVTGASGGVGSTAVALLHKLG--YQVAAVSGRESTHGYLKS 189 (324)
T ss_dssp CEEESSTTSHHHHHHHHHHHHTT--CCEEEEESCGGGHHHHHH
T ss_pred eEEEECCCcHHHHHHHHHHHHcC--CEEEEEeCCHHHHHHHHh
Confidence 4999997 47888888887654 699999999998888865
No 483
>1x49_A Interferon-induced, double-stranded RNA- activated protein kinase; structure genomics, DSRM domain, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.50.1.1
Probab=30.08 E-value=39 Score=30.67 Aligned_cols=68 Identities=21% Similarity=0.226 Sum_probs=45.8
Q ss_pred ChhhHHHhhhhhcccCcceeccccCCccccccchhhhhhhhhcccccccccccCCCcccCCCceeEEEEEeeccCCcccc
Q 002218 394 FPREMLFMFCRQHWLSEPVFSTCSNSLKESSESSRFYEKSAALESAETGKECTSGGGTAASDNVRCEVKIFSKSRDPILE 473 (952)
Q Consensus 394 ~pr~~l~~fc~~~~l~ep~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~c~v~~~s~~~~~~~~ 473 (952)
-|+..|-.+|..+++. |.|... . .. |......|.|+|.|-.+.
T Consensus 15 n~Kt~LqE~~Q~~~~~-p~Y~~~--~--------------------------~~--Gp~H~~~F~v~v~i~g~~------ 57 (97)
T 1x49_A 15 FYMDKLNKYRQMHGVA-ITYKEL--S--------------------------TS--GPPHDRRFTFQVLIDEKE------ 57 (97)
T ss_dssp HHHHHHHHHHHHHTCC-EEEEEE--E--------------------------EE--SCSSSCEEEEEEEESSCC------
T ss_pred CHHHHHHHHHHHcCCC-CeEEEE--E--------------------------ee--CCCCCCcEEEEEEECCEE------
Confidence 4788999999998885 877654 0 01 222234499999984321
Q ss_pred cCchhhhhhhhhhHhhhhhHHHHHHH
Q 002218 474 CSPKEFYKKQNESIENASLKVLSWLN 499 (952)
Q Consensus 474 ~~~~~~~~~~~dai~~a~l~~l~~~~ 499 (952)
+ ....-+..-+|=|+||.++|..|.
T Consensus 58 ~-~~G~G~SKK~Aeq~AA~~AL~~L~ 82 (97)
T 1x49_A 58 F-PEAKGRSKQEARNAAAKLAVDILD 82 (97)
T ss_dssp C-CCEEESSHHHHHHHHHHHHHHHHT
T ss_pred E-EEEeeCCHHHHHHHHHHHHHHHHH
Confidence 1 233446667899999999998774
No 484
>2zwa_A Leucine carboxyl methyltransferase 2; HET: SAH CIT; 1.70A {Saccharomyces cerevisiae} PDB: 2zw9_A* 2zzk_A*
Probab=29.99 E-value=3.6e+02 Score=31.72 Aligned_cols=116 Identities=14% Similarity=0.101 Sum_probs=65.5
Q ss_pred CCCEEEEEcCccchHHHHHhcCCC-------CCceEEEEeCChHHHHHHHHHHhhhh--hcc-c----ccCCCC-----C
Q 002218 713 CATTLVDFGCGSGSLLDSLLDYPT-------ALEKIVGVDISQKSLSRAAKIIHSKL--SKK-L----DAAVPC-----T 773 (952)
Q Consensus 713 k~krVLDIGCGeG~ll~~LAr~g~-------~~~qVVGVDISeemLe~ArkrLsa~l--a~~-~----~~l~Pr-----~ 773 (952)
+...|+-||||-=.....|....+ ....++=||. ++.++.-++.+.... ... . ....+. .
T Consensus 107 ~~~qvV~LGaGlDtr~~Rl~~~~~~~~~~~~~~~~~~EvD~-p~v~~~K~~~l~~~~~l~~~~~~~~~~~~~~~~~~~~~ 185 (695)
T 2zwa_A 107 KKIVVVNLGCGYDPLPFQLLDTNNIQSQQYHDRVSFIDIDY-SDLLKIKIELIKTIPELSKIIGLSEDKDYVDDSNVDFL 185 (695)
T ss_dssp SEEEEEEETCTTCCHHHHHHCTTCGGGGGGSSSEEEEEEEC-HHHHHHHHHHHHHCHHHHHHTTCCSSCSSCSCTTCCCE
T ss_pred CCcEEEEcccccCcceeeeeccCcccccccCCCCEEEECcc-HHHHHHHHHHHHcChHHHHhhccccccccccccccccc
Confidence 457899999998777777765421 1256777775 444444444443110 000 0 000000 0
Q ss_pred CCccEEEEEcCccccCC-----------CCCCccEEEEccccccCChhHHHHHHHHHHHccCCCEEEE
Q 002218 774 DVKSAVLFDGSITVFDS-----------RLHGFDIGTCLEVIEHMEEDEASQFGNIVLSSFRPRILIV 830 (952)
Q Consensus 774 ~~~nVtf~qGDa~dLpf-----------~d~sFDVVVcieVIEHL~dD~l~~L~eeI~RvLKPG~LII 830 (952)
...+..++..|+.+... ....--++++-.++.+|+++....+.+.+.+ +.++.+++
T Consensus 186 ~s~~y~~v~~Dl~~~~~~~~~l~~~g~~d~~~ptl~i~Egvl~Yl~~~~~~~ll~~~~~-~~~~~~~~ 252 (695)
T 2zwa_A 186 TTPKYLARPCDLNDSKMFSTLLNECQLYDPNVVKVFVAEVSLAYMKPERSDSIIEATSK-MENSHFII 252 (695)
T ss_dssp ECSSEEEEECCTTCHHHHHHHHHHTTTTCTTEEEEEEEESSGGGSCHHHHHHHHHHHHT-SSSEEEEE
T ss_pred cCCCeeEEeCcCCCcHHHHHHHhhccCCCCCCCEEEeeeeEEEEcCHHHHHHHHHHHhh-CCCceEEE
Confidence 01367888899977421 1122335667779999999998888887765 44344444
No 485
>3p2y_A Alanine dehydrogenase/pyridine nucleotide transhy; seattle structural genomics center for infectious disease, S tuberculosis; 1.82A {Mycobacterium smegmatis str}
Probab=29.93 E-value=18 Score=40.54 Aligned_cols=41 Identities=15% Similarity=0.178 Sum_probs=30.6
Q ss_pred CCCEEEEEcCcc-chHHHHHh-cCCCCCceEEEEeCChHHHHHHHH
Q 002218 713 CATTLVDFGCGS-GSLLDSLL-DYPTALEKIVGVDISQKSLSRAAK 756 (952)
Q Consensus 713 k~krVLDIGCGe-G~ll~~LA-r~g~~~~qVVGVDISeemLe~Ark 756 (952)
++.+|+=+|+|. |..+..++ ..| .+|+++|.++.-++.+.+
T Consensus 183 ~~~kV~ViG~G~iG~~aa~~a~~lG---a~V~v~D~~~~~l~~~~~ 225 (381)
T 3p2y_A 183 KPASALVLGVGVAGLQALATAKRLG---AKTTGYDVRPEVAEQVRS 225 (381)
T ss_dssp CCCEEEEESCSHHHHHHHHHHHHHT---CEEEEECSSGGGHHHHHH
T ss_pred CCCEEEEECchHHHHHHHHHHHHCC---CEEEEEeCCHHHHHHHHH
Confidence 678999999994 44444443 445 789999999988877754
No 486
>3tri_A Pyrroline-5-carboxylate reductase; amino acid biosynthesis, oxidoreductase; HET: NAP; 2.50A {Coxiella burnetii}
Probab=29.45 E-value=89 Score=32.65 Aligned_cols=93 Identities=11% Similarity=0.013 Sum_probs=54.8
Q ss_pred CEEEEEcCccc--hHHHHHhcCCCCCceEEEEeCChHHHHHHHHHHhhhhhcccccCCCCCCCccEEEEEcCccccCCCC
Q 002218 715 TTLVDFGCGSG--SLLDSLLDYPTALEKIVGVDISQKSLSRAAKIIHSKLSKKLDAAVPCTDVKSAVLFDGSITVFDSRL 792 (952)
Q Consensus 715 krVLDIGCGeG--~ll~~LAr~g~~~~qVVGVDISeemLe~ArkrLsa~la~~~~~l~Pr~~~~nVtf~qGDa~dLpf~d 792 (952)
.+|.=||||.- .++..|++.+-+..+|+..|.+++.++..++.+ .+... .|..+. .
T Consensus 4 ~~I~iIG~G~mG~aia~~l~~~g~~~~~V~v~dr~~~~~~~l~~~~------------------gi~~~-~~~~~~---~ 61 (280)
T 3tri_A 4 SNITFIGGGNMARNIVVGLIANGYDPNRICVTNRSLDKLDFFKEKC------------------GVHTT-QDNRQG---A 61 (280)
T ss_dssp SCEEEESCSHHHHHHHHHHHHTTCCGGGEEEECSSSHHHHHHHHTT------------------CCEEE-SCHHHH---H
T ss_pred CEEEEEcccHHHHHHHHHHHHCCCCCCeEEEEeCCHHHHHHHHHHc------------------CCEEe-CChHHH---H
Confidence 57888999842 345566666512238999999998777665421 22222 122111 2
Q ss_pred CCccEEEEccccccCChhHHHHHHHHHHHc-cCCCEEEEEecC
Q 002218 793 HGFDIGTCLEVIEHMEEDEASQFGNIVLSS-FRPRILIVSTPN 834 (952)
Q Consensus 793 ~sFDVVVcieVIEHL~dD~l~~L~eeI~Rv-LKPG~LIISTPN 834 (952)
...|+|+..- ++.....+.+++... ++++.+++++-+
T Consensus 62 ~~aDvVilav-----~p~~~~~vl~~l~~~~l~~~~iiiS~~a 99 (280)
T 3tri_A 62 LNADVVVLAV-----KPHQIKMVCEELKDILSETKILVISLAV 99 (280)
T ss_dssp SSCSEEEECS-----CGGGHHHHHHHHHHHHHTTTCEEEECCT
T ss_pred hcCCeEEEEe-----CHHHHHHHHHHHHhhccCCCeEEEEecC
Confidence 3568877643 334444555567777 888856666544
No 487
>1t11_A Trigger factor, TF; helix-turn-helix, four-helix-bundle, ppiase, chaperone; 2.50A {Vibrio cholerae} SCOP: a.223.1.1 d.241.2.1 d.26.1.1 PDB: 1l1p_A
Probab=29.42 E-value=41 Score=37.53 Aligned_cols=59 Identities=29% Similarity=0.423 Sum_probs=49.5
Q ss_pred CCCCceeEEEEEEEEeecccchhhhhc--cccceEEEeccCccchhhhhhhhhccccccceecccCC
Q 002218 581 PSNGCLSFISYSVSLVIEGETMKELLE--SREEFEFEMGTGAVIPQVEVVTAQMSVGQSACFCKELP 645 (952)
Q Consensus 581 p~~gs~~~i~y~~~l~~~~~~~~~~~e--~~~~~~fe~g~~a~~~~l~~v~~q~sv~q~~~~~~~l~ 645 (952)
+..|..+.|.|+..+ +|+. ++ ....|.|++|.|.+++-++.-+..|.+|....|....|
T Consensus 161 ~~~gD~V~i~y~g~~--dG~~----fd~~~~~~~~~~lG~g~~ipgfee~L~Gmk~Ge~~~v~v~fp 221 (392)
T 1t11_A 161 AENGKRVSIDFVGSI--DGVE----FEGGKAENFPLEMGAGRMIPGFEDGIVGKTKGMEFVIDVTFP 221 (392)
T ss_dssp CCTTCEEEEEEEEES--SSSC----CTTCEEEEEEEETTSCCBSTTSGGGTTTCCSSCCCCEEEECC
T ss_pred CCCCCEEEEEEEEEE--CCEE----ccCCCccceEEEecCCCcchhHHHHhCCCCCCCEEEEEEeCc
Confidence 689999999999883 5653 34 24689999999999999999999999999998885543
No 488
>1fmc_A 7 alpha-hydroxysteroid dehydrogenase; short-chain dehydrogenase/reductase, bIle acid catabolism, oxidoreductase; HET: CHO NAD; 1.80A {Escherichia coli} SCOP: c.2.1.2 PDB: 1ahi_A* 1ahh_A*
Probab=29.31 E-value=87 Score=31.01 Aligned_cols=76 Identities=17% Similarity=0.068 Sum_probs=49.4
Q ss_pred CCCEEEEEcCccch---HHHHHhcCCCCCceEEEEeCChHHHHHHHHHHhhhhhcccccCCCCCCCccEEEEEcCccccC
Q 002218 713 CATTLVDFGCGSGS---LLDSLLDYPTALEKIVGVDISQKSLSRAAKIIHSKLSKKLDAAVPCTDVKSAVLFDGSITVFD 789 (952)
Q Consensus 713 k~krVLDIGCGeG~---ll~~LAr~g~~~~qVVGVDISeemLe~ArkrLsa~la~~~~~l~Pr~~~~nVtf~qGDa~dLp 789 (952)
.+++||=.|.+.|. ++..|++.| .+|+++|.+++.++...+.+.. ...++.++.+|+.+..
T Consensus 10 ~~~~vlVtGasggiG~~la~~l~~~G---~~V~~~~r~~~~~~~~~~~~~~-------------~~~~~~~~~~D~~~~~ 73 (255)
T 1fmc_A 10 DGKCAIITGAGAGIGKEIAITFATAG---ASVVVSDINADAANHVVDEIQQ-------------LGGQAFACRCDITSEQ 73 (255)
T ss_dssp TTCEEEETTTTSHHHHHHHHHHHTTT---CEEEEEESCHHHHHHHHHHHHH-------------TTCCEEEEECCTTCHH
T ss_pred CCCEEEEECCccHHHHHHHHHHHHCC---CEEEEEcCCHHHHHHHHHHHHH-------------hCCceEEEEcCCCCHH
Confidence 56788888865432 335566676 7999999998877655444421 1136788889987643
Q ss_pred C----------CCCCccEEEEcccc
Q 002218 790 S----------RLHGFDIGTCLEVI 804 (952)
Q Consensus 790 f----------~d~sFDVVVcieVI 804 (952)
. ..+.+|+|+..-.+
T Consensus 74 ~~~~~~~~~~~~~~~~d~vi~~Ag~ 98 (255)
T 1fmc_A 74 ELSALADFAISKLGKVDILVNNAGG 98 (255)
T ss_dssp HHHHHHHHHHHHHSSCCEEEECCCC
T ss_pred HHHHHHHHHHHhcCCCCEEEECCCC
Confidence 1 01378999886543
No 489
>3tjr_A Short chain dehydrogenase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, SCD, NAD; HET: UNL; 1.60A {Mycobacterium avium subsp}
Probab=29.20 E-value=1.5e+02 Score=30.86 Aligned_cols=78 Identities=19% Similarity=0.100 Sum_probs=56.5
Q ss_pred cCCCCEEEEEcCccch---HHHHHhcCCCCCceEEEEeCChHHHHHHHHHHhhhhhcccccCCCCCCCccEEEEEcCccc
Q 002218 711 ESCATTLVDFGCGSGS---LLDSLLDYPTALEKIVGVDISQKSLSRAAKIIHSKLSKKLDAAVPCTDVKSAVLFDGSITV 787 (952)
Q Consensus 711 ~~k~krVLDIGCGeG~---ll~~LAr~g~~~~qVVGVDISeemLe~ArkrLsa~la~~~~~l~Pr~~~~nVtf~qGDa~d 787 (952)
...+++||=.|++.|. ++..|++.| .+|+.+|.+++.++.+.+.+.. ...++.++.+|+.+
T Consensus 28 ~l~gk~vlVTGas~gIG~~la~~l~~~G---~~V~~~~r~~~~~~~~~~~l~~-------------~~~~~~~~~~Dv~d 91 (301)
T 3tjr_A 28 GFDGRAAVVTGGASGIGLATATEFARRG---ARLVLSDVDQPALEQAVNGLRG-------------QGFDAHGVVCDVRH 91 (301)
T ss_dssp CSTTCEEEEETTTSHHHHHHHHHHHHTT---CEEEEEESCHHHHHHHHHHHHH-------------TTCCEEEEECCTTC
T ss_pred ccCCCEEEEeCCCCHHHHHHHHHHHHCC---CEEEEEECCHHHHHHHHHHHHh-------------cCCceEEEEccCCC
Confidence 3467899999988663 456777887 7999999999988877665542 12368899999987
Q ss_pred cCC----------CCCCccEEEEcccc
Q 002218 788 FDS----------RLHGFDIGTCLEVI 804 (952)
Q Consensus 788 Lpf----------~d~sFDVVVcieVI 804 (952)
... ..+..|+++..-.+
T Consensus 92 ~~~v~~~~~~~~~~~g~id~lvnnAg~ 118 (301)
T 3tjr_A 92 LDEMVRLADEAFRLLGGVDVVFSNAGI 118 (301)
T ss_dssp HHHHHHHHHHHHHHHSSCSEEEECCCC
T ss_pred HHHHHHHHHHHHHhCCCCCEEEECCCc
Confidence 532 12478999986543
No 490
>1pqw_A Polyketide synthase; rossmann fold, dimer, structural genomics, PSI, protein STRU initiative; 2.66A {Mycobacterium tuberculosis} SCOP: c.2.1.1
Probab=29.07 E-value=32 Score=33.28 Aligned_cols=45 Identities=13% Similarity=0.002 Sum_probs=32.4
Q ss_pred hhcCCCCEEEEEcC--ccchHHHHHhcCCCCCceEEEEeCChHHHHHHH
Q 002218 709 IKESCATTLVDFGC--GSGSLLDSLLDYPTALEKIVGVDISQKSLSRAA 755 (952)
Q Consensus 709 L~~~k~krVLDIGC--GeG~ll~~LAr~g~~~~qVVGVDISeemLe~Ar 755 (952)
....++++||..|+ |.|..+..+++..+ .+|+++|.+++.++.++
T Consensus 34 ~~~~~g~~vlV~Ga~ggiG~~~~~~~~~~G--~~V~~~~~~~~~~~~~~ 80 (198)
T 1pqw_A 34 GRLSPGERVLIHSATGGVGMAAVSIAKMIG--ARIYTTAGSDAKREMLS 80 (198)
T ss_dssp SCCCTTCEEEETTTTSHHHHHHHHHHHHHT--CEEEEEESSHHHHHHHH
T ss_pred hCCCCCCEEEEeeCCChHHHHHHHHHHHcC--CEEEEEeCCHHHHHHHH
Confidence 34457789999994 55776666655322 78999999998777664
No 491
>4g65_A TRK system potassium uptake protein TRKA; structural genomics, center for structural genomics of infec diseases, csgid, niaid; HET: MSE; 2.09A {Vibrio vulnificus}
Probab=29.06 E-value=2.1e+02 Score=32.30 Aligned_cols=106 Identities=14% Similarity=0.229 Sum_probs=69.7
Q ss_pred CCCCEEEEEcCcc-chHHHHHhcCCCCCceEEEEeCChHHHHHHHHHHhhhhhcccccCCCCCCCccEEEEEcCccccCC
Q 002218 712 SCATTLVDFGCGS-GSLLDSLLDYPTALEKIVGVDISQKSLSRAAKIIHSKLSKKLDAAVPCTDVKSAVLFDGSITVFDS 790 (952)
Q Consensus 712 ~k~krVLDIGCGe-G~ll~~LAr~g~~~~qVVGVDISeemLe~ArkrLsa~la~~~~~l~Pr~~~~nVtf~qGDa~dLpf 790 (952)
.+.++|+=+|.|. |..+....+.. .+|.-||.+++-.+...+.+ ++..+++||..+...
T Consensus 233 ~~~~~v~I~GgG~ig~~lA~~L~~~---~~v~iIE~d~~r~~~la~~l-----------------~~~~Vi~GD~td~~~ 292 (461)
T 4g65_A 233 KPYRRIMIVGGGNIGASLAKRLEQT---YSVKLIERNLQRAEKLSEEL-----------------ENTIVFCGDAADQEL 292 (461)
T ss_dssp SCCCEEEEECCSHHHHHHHHHHTTT---SEEEEEESCHHHHHHHHHHC-----------------TTSEEEESCTTCHHH
T ss_pred ccccEEEEEcchHHHHHHHHHhhhc---CceEEEecCHHHHHHHHHHC-----------------CCceEEeccccchhh
Confidence 3567899999885 44443333443 78999999998777765543 367899999988653
Q ss_pred ----CCCCccEEEEccccccCChhHHHHHHHHHHHccCCCEEEEEecCCchhHHHH
Q 002218 791 ----RLHGFDIGTCLEVIEHMEEDEASQFGNIVLSSFRPRILIVSTPNYEYNAILQ 842 (952)
Q Consensus 791 ----~d~sFDVVVcieVIEHL~dD~l~~L~eeI~RvLKPG~LIISTPN~efN~lf~ 842 (952)
.-...|++++.-- +|+...+...+++-+....++.-.-+.+|...+.
T Consensus 293 L~ee~i~~~D~~ia~T~-----~De~Ni~~~llAk~~gv~kvIa~vn~~~~~~l~~ 343 (461)
T 4g65_A 293 LTEENIDQVDVFIALTN-----EDETNIMSAMLAKRMGAKKVMVLIQRGAYVDLVQ 343 (461)
T ss_dssp HHHTTGGGCSEEEECCS-----CHHHHHHHHHHHHHTTCSEEEEECSCHHHHHHHC
T ss_pred HhhcCchhhcEEEEccc-----CcHHHHHHHHHHHHcCCccccccccccchhhhhh
Confidence 2357899988533 3565666666666665555555555555555554
No 492
>2fzw_A Alcohol dehydrogenase class III CHI chain; S-nitrosoglutathione reductase, glutathione-dependent formaldehyde dehydrogenase, oxidoreductase; HET: NAD; 1.84A {Homo sapiens} SCOP: b.35.1.2 c.2.1.1 PDB: 3qj5_A* 1mc5_A* 2fze_A* 1m6w_A* 1ma0_A* 1mp0_A* 1teh_A* 1m6h_A*
Probab=28.95 E-value=43 Score=35.95 Aligned_cols=50 Identities=26% Similarity=0.356 Sum_probs=37.4
Q ss_pred HHHHhhcCCCCEEEEEcCcc-chHHHHHhcCCCCCc-eEEEEeCChHHHHHHHH
Q 002218 705 ALQHIKESCATTLVDFGCGS-GSLLDSLLDYPTALE-KIVGVDISQKSLSRAAK 756 (952)
Q Consensus 705 VldlL~~~k~krVLDIGCGe-G~ll~~LAr~g~~~~-qVVGVDISeemLe~Ark 756 (952)
+.+.....++.+||-+|+|. |.++..+++..+ . +|+++|.+++.++.+++
T Consensus 182 l~~~~~~~~g~~VlV~GaG~vG~~avqla~~~G--a~~Vi~~~~~~~~~~~~~~ 233 (373)
T 2fzw_A 182 AVNTAKLEPGSVCAVFGLGGVGLAVIMGCKVAG--ASRIIGVDINKDKFARAKE 233 (373)
T ss_dssp HHTTTCCCTTCEEEEECCSHHHHHHHHHHHHHT--CSEEEEECSCGGGHHHHHH
T ss_pred HHhhcCCCCCCEEEEECCCHHHHHHHHHHHHcC--CCeEEEEcCCHHHHHHHHH
Confidence 33444555778999999874 777777776532 5 89999999998888864
No 493
>3m6i_A L-arabinitol 4-dehydrogenase; medium chain dehydrogenase/reductase, oxidoreductase; HET: NAD; 2.60A {Neurospora crassa}
Probab=28.81 E-value=64 Score=34.49 Aligned_cols=49 Identities=20% Similarity=0.164 Sum_probs=38.3
Q ss_pred HHhhcCCCCEEEEEcCcc-chHHHHHhcCCCCCce-EEEEeCChHHHHHHHHH
Q 002218 707 QHIKESCATTLVDFGCGS-GSLLDSLLDYPTALEK-IVGVDISQKSLSRAAKI 757 (952)
Q Consensus 707 dlL~~~k~krVLDIGCGe-G~ll~~LAr~g~~~~q-VVGVDISeemLe~Arkr 757 (952)
+.....++.+||=+|+|. |.++..+++..+ .+ |+++|.+++-++.+++.
T Consensus 173 ~~~~~~~g~~VlV~GaG~vG~~aiqlak~~G--a~~Vi~~~~~~~~~~~a~~l 223 (363)
T 3m6i_A 173 QRAGVRLGDPVLICGAGPIGLITMLCAKAAG--ACPLVITDIDEGRLKFAKEI 223 (363)
T ss_dssp HHHTCCTTCCEEEECCSHHHHHHHHHHHHTT--CCSEEEEESCHHHHHHHHHH
T ss_pred HHcCCCCCCEEEEECCCHHHHHHHHHHHHcC--CCEEEEECCCHHHHHHHHHh
Confidence 445556788999999975 788888887543 54 99999999999988764
No 494
>3h7a_A Short chain dehydrogenase; oxidoreductase, PSI-2, NYSGXRC, structural genomics, protein structure initiative; 1.87A {Rhodopseudomonas palustris}
Probab=28.47 E-value=1.2e+02 Score=30.67 Aligned_cols=76 Identities=9% Similarity=-0.060 Sum_probs=54.8
Q ss_pred CCCEEEEEcCccch---HHHHHhcCCCCCceEEEEeCChHHHHHHHHHHhhhhhcccccCCCCCCCccEEEEEcCccccC
Q 002218 713 CATTLVDFGCGSGS---LLDSLLDYPTALEKIVGVDISQKSLSRAAKIIHSKLSKKLDAAVPCTDVKSAVLFDGSITVFD 789 (952)
Q Consensus 713 k~krVLDIGCGeG~---ll~~LAr~g~~~~qVVGVDISeemLe~ArkrLsa~la~~~~~l~Pr~~~~nVtf~qGDa~dLp 789 (952)
.++++|=.|++.|. ++..|++.| .+|+.+|.+++.++.+.+.+... ..++.++.+|+.+..
T Consensus 6 ~~k~vlVTGas~GIG~aia~~l~~~G---~~V~~~~r~~~~~~~~~~~~~~~-------------~~~~~~~~~Dv~~~~ 69 (252)
T 3h7a_A 6 RNATVAVIGAGDYIGAEIAKKFAAEG---FTVFAGRRNGEKLAPLVAEIEAA-------------GGRIVARSLDARNED 69 (252)
T ss_dssp CSCEEEEECCSSHHHHHHHHHHHHTT---CEEEEEESSGGGGHHHHHHHHHT-------------TCEEEEEECCTTCHH
T ss_pred CCCEEEEECCCchHHHHHHHHHHHCC---CEEEEEeCCHHHHHHHHHHHHhc-------------CCeEEEEECcCCCHH
Confidence 56789999988764 446777887 79999999998887776655421 237889999997753
Q ss_pred CC---------CCCccEEEEcccc
Q 002218 790 SR---------LHGFDIGTCLEVI 804 (952)
Q Consensus 790 f~---------d~sFDVVVcieVI 804 (952)
.- .+..|+++..-.+
T Consensus 70 ~v~~~~~~~~~~g~id~lv~nAg~ 93 (252)
T 3h7a_A 70 EVTAFLNAADAHAPLEVTIFNVGA 93 (252)
T ss_dssp HHHHHHHHHHHHSCEEEEEECCCC
T ss_pred HHHHHHHHHHhhCCceEEEECCCc
Confidence 20 1578999886554
No 495
>3d4o_A Dipicolinate synthase subunit A; NP_243269.1, structural GEN joint center for structural genomics, JCSG, protein structu initiative, PSI-2; HET: MSE TAR; 2.10A {Bacillus halodurans}
Probab=28.43 E-value=1.4e+02 Score=31.25 Aligned_cols=90 Identities=14% Similarity=0.153 Sum_probs=51.2
Q ss_pred cCCCCEEEEEcCcc-chHH-HHHhcCCCCCceEEEEeCChHHHHHHHHHHhhhhhcccccCCCCCCCccEEEEEcCcccc
Q 002218 711 ESCATTLVDFGCGS-GSLL-DSLLDYPTALEKIVGVDISQKSLSRAAKIIHSKLSKKLDAAVPCTDVKSAVLFDGSITVF 788 (952)
Q Consensus 711 ~~k~krVLDIGCGe-G~ll-~~LAr~g~~~~qVVGVDISeemLe~ArkrLsa~la~~~~~l~Pr~~~~nVtf~qGDa~dL 788 (952)
...+++|+=||+|. |... ..+...| .+|+++|.+.+..+.+.+ + .++... ..++
T Consensus 152 ~l~g~~v~IiG~G~iG~~~a~~l~~~G---~~V~~~dr~~~~~~~~~~-~------------------g~~~~~--~~~l 207 (293)
T 3d4o_A 152 TIHGANVAVLGLGRVGMSVARKFAALG---AKVKVGARESDLLARIAE-M------------------GMEPFH--ISKA 207 (293)
T ss_dssp CSTTCEEEEECCSHHHHHHHHHHHHTT---CEEEEEESSHHHHHHHHH-T------------------TSEEEE--GGGH
T ss_pred CCCCCEEEEEeeCHHHHHHHHHHHhCC---CEEEEEECCHHHHHHHHH-C------------------CCeecC--hhhH
Confidence 34678999999984 3333 3444555 699999999876544421 1 112211 1122
Q ss_pred CCCCCCccEEEEccccccCChhHHHHHHHHHHHccCCCEEEEEe
Q 002218 789 DSRLHGFDIGTCLEVIEHMEEDEASQFGNIVLSSFRPRILIVST 832 (952)
Q Consensus 789 pf~d~sFDVVVcieVIEHL~dD~l~~L~eeI~RvLKPG~LIIST 832 (952)
.......|+|+..--.+-+. . ..+..+|||.++|.+
T Consensus 208 ~~~l~~aDvVi~~~p~~~i~-~-------~~l~~mk~~~~lin~ 243 (293)
T 3d4o_A 208 AQELRDVDVCINTIPALVVT-A-------NVLAEMPSHTFVIDL 243 (293)
T ss_dssp HHHTTTCSEEEECCSSCCBC-H-------HHHHHSCTTCEEEEC
T ss_pred HHHhcCCCEEEECCChHHhC-H-------HHHHhcCCCCEEEEe
Confidence 21235789988765443332 2 245568999555544
No 496
>2rir_A Dipicolinate synthase, A chain; structural genomics, APC1343, PSI-2, structure initiative; HET: MSE NAP; 2.79A {Bacillus subtilis}
Probab=28.41 E-value=1.4e+02 Score=31.42 Aligned_cols=90 Identities=19% Similarity=0.248 Sum_probs=51.9
Q ss_pred cCCCCEEEEEcCcc-chHH-HHHhcCCCCCceEEEEeCChHHHHHHHHHHhhhhhcccccCCCCCCCccEEEEEcCcccc
Q 002218 711 ESCATTLVDFGCGS-GSLL-DSLLDYPTALEKIVGVDISQKSLSRAAKIIHSKLSKKLDAAVPCTDVKSAVLFDGSITVF 788 (952)
Q Consensus 711 ~~k~krVLDIGCGe-G~ll-~~LAr~g~~~~qVVGVDISeemLe~ArkrLsa~la~~~~~l~Pr~~~~nVtf~qGDa~dL 788 (952)
...+++|+=||+|. |... ..+...+ .+|+++|.+.+..+.+.+ + .++... ..++
T Consensus 154 ~l~g~~v~IiG~G~iG~~~a~~l~~~G---~~V~~~d~~~~~~~~~~~-~------------------g~~~~~--~~~l 209 (300)
T 2rir_A 154 TIHGSQVAVLGLGRTGMTIARTFAALG---ANVKVGARSSAHLARITE-M------------------GLVPFH--TDEL 209 (300)
T ss_dssp CSTTSEEEEECCSHHHHHHHHHHHHTT---CEEEEEESSHHHHHHHHH-T------------------TCEEEE--GGGH
T ss_pred CCCCCEEEEEcccHHHHHHHHHHHHCC---CEEEEEECCHHHHHHHHH-C------------------CCeEEc--hhhH
Confidence 34678999999984 3322 3444555 699999999865544322 0 112211 1122
Q ss_pred CCCCCCccEEEEccccccCChhHHHHHHHHHHHccCCCEEEEEe
Q 002218 789 DSRLHGFDIGTCLEVIEHMEEDEASQFGNIVLSSFRPRILIVST 832 (952)
Q Consensus 789 pf~d~sFDVVVcieVIEHL~dD~l~~L~eeI~RvLKPG~LIIST 832 (952)
+......|+|+..--.+-+. + ..+..+|||.++|.+
T Consensus 210 ~~~l~~aDvVi~~~p~~~i~-~-------~~~~~mk~g~~lin~ 245 (300)
T 2rir_A 210 KEHVKDIDICINTIPSMILN-Q-------TVLSSMTPKTLILDL 245 (300)
T ss_dssp HHHSTTCSEEEECCSSCCBC-H-------HHHTTSCTTCEEEEC
T ss_pred HHHhhCCCEEEECCChhhhC-H-------HHHHhCCCCCEEEEE
Confidence 22235789998865553333 1 245678999555544
No 497
>4fn4_A Short chain dehydrogenase; NADH-binding, rossmann fold, oxidoreductase; HET: NAD; 1.75A {Sulfolobus acidocaldarius}
Probab=28.04 E-value=1.8e+02 Score=30.38 Aligned_cols=75 Identities=12% Similarity=0.138 Sum_probs=56.3
Q ss_pred CCCCEEEEEcCccch---HHHHHhcCCCCCceEEEEeCChHHHHHHHHHHhhhhhcccccCCCCCCCccEEEEEcCcccc
Q 002218 712 SCATTLVDFGCGSGS---LLDSLLDYPTALEKIVGVDISQKSLSRAAKIIHSKLSKKLDAAVPCTDVKSAVLFDGSITVF 788 (952)
Q Consensus 712 ~k~krVLDIGCGeG~---ll~~LAr~g~~~~qVVGVDISeemLe~ArkrLsa~la~~~~~l~Pr~~~~nVtf~qGDa~dL 788 (952)
.+++.+|=-|.+.|. .+..|++.| .+|+.+|.+++.++.+.+.+... -.++.++++|+.+.
T Consensus 5 L~gKvalVTGas~GIG~aiA~~la~~G---a~Vv~~~~~~~~~~~~~~~i~~~-------------g~~~~~~~~Dvt~~ 68 (254)
T 4fn4_A 5 LKNKVVIVTGAGSGIGRAIAKKFALND---SIVVAVELLEDRLNQIVQELRGM-------------GKEVLGVKADVSKK 68 (254)
T ss_dssp GTTCEEEEETTTSHHHHHHHHHHHHTT---CEEEEEESCHHHHHHHHHHHHHT-------------TCCEEEEECCTTSH
T ss_pred CCCCEEEEeCCCCHHHHHHHHHHHHcC---CEEEEEECCHHHHHHHHHHHHhc-------------CCcEEEEEccCCCH
Confidence 468899999988776 346777888 89999999999998887766431 13688899999875
Q ss_pred CC----------CCCCccEEEEcc
Q 002218 789 DS----------RLHGFDIGTCLE 802 (952)
Q Consensus 789 pf----------~d~sFDVVVcie 802 (952)
.. ..+..|+++.+-
T Consensus 69 ~~v~~~~~~~~~~~G~iDiLVNNA 92 (254)
T 4fn4_A 69 KDVEEFVRRTFETYSRIDVLCNNA 92 (254)
T ss_dssp HHHHHHHHHHHHHHSCCCEEEECC
T ss_pred HHHHHHHHHHHHHcCCCCEEEECC
Confidence 32 236789998754
No 498
>3t4x_A Oxidoreductase, short chain dehydrogenase/reducta; structural genomics, center for structural genomics of infec diseases, csgid; 2.80A {Bacillus anthracis}
Probab=27.77 E-value=1.3e+02 Score=30.58 Aligned_cols=79 Identities=13% Similarity=0.024 Sum_probs=53.7
Q ss_pred CCCCEEEEEcCccch---HHHHHhcCCCCCceEEEEeCChHHHHHHHHHHhhhhhcccccCCCCCCCccEEEEEcCcccc
Q 002218 712 SCATTLVDFGCGSGS---LLDSLLDYPTALEKIVGVDISQKSLSRAAKIIHSKLSKKLDAAVPCTDVKSAVLFDGSITVF 788 (952)
Q Consensus 712 ~k~krVLDIGCGeG~---ll~~LAr~g~~~~qVVGVDISeemLe~ArkrLsa~la~~~~~l~Pr~~~~nVtf~qGDa~dL 788 (952)
..++++|=.|++.|. ++..|++.| .+|+.+|.+++.++...+.+.... ....+.++.+|+.+.
T Consensus 8 l~~k~~lVTGas~gIG~aia~~l~~~G---~~V~~~~r~~~~~~~~~~~l~~~~-----------~~~~~~~~~~D~~~~ 73 (267)
T 3t4x_A 8 LKGKTALVTGSTAGIGKAIATSLVAEG---ANVLINGRREENVNETIKEIRAQY-----------PDAILQPVVADLGTE 73 (267)
T ss_dssp CTTCEEEETTCSSHHHHHHHHHHHHTT---CEEEEEESSHHHHHHHHHHHHHHC-----------TTCEEEEEECCTTSH
T ss_pred cCCCEEEEeCCCcHHHHHHHHHHHHCC---CEEEEEeCCHHHHHHHHHHHHhhC-----------CCceEEEEecCCCCH
Confidence 356789988977653 446677777 799999999988877666554211 123577888888764
Q ss_pred CC------CCCCccEEEEcccc
Q 002218 789 DS------RLHGFDIGTCLEVI 804 (952)
Q Consensus 789 pf------~d~sFDVVVcieVI 804 (952)
.. ..+..|+++..-.+
T Consensus 74 ~~~~~~~~~~g~id~lv~nAg~ 95 (267)
T 3t4x_A 74 QGCQDVIEKYPKVDILINNLGI 95 (267)
T ss_dssp HHHHHHHHHCCCCSEEEECCCC
T ss_pred HHHHHHHHhcCCCCEEEECCCC
Confidence 31 23578999886543
No 499
>3ppi_A 3-hydroxyacyl-COA dehydrogenase type-2; ssgcid, dehydrogenas mycobacterium avium, structural genomics; 2.00A {Mycobacterium avium}
Probab=27.32 E-value=1.3e+02 Score=30.65 Aligned_cols=71 Identities=15% Similarity=0.088 Sum_probs=51.5
Q ss_pred CCCCEEEEEcCccch---HHHHHhcCCCCCceEEEEeCChHHHHHHHHHHhhhhhcccccCCCCCCCccEEEEEcCcccc
Q 002218 712 SCATTLVDFGCGSGS---LLDSLLDYPTALEKIVGVDISQKSLSRAAKIIHSKLSKKLDAAVPCTDVKSAVLFDGSITVF 788 (952)
Q Consensus 712 ~k~krVLDIGCGeG~---ll~~LAr~g~~~~qVVGVDISeemLe~ArkrLsa~la~~~~~l~Pr~~~~nVtf~qGDa~dL 788 (952)
..++++|=.|++.|. ++..|++.| .+|+.+|.+.+.++...+.+. .++.++++|+.+.
T Consensus 28 l~~k~vlVTGas~GIG~aia~~l~~~G---~~Vi~~~r~~~~~~~~~~~~~----------------~~~~~~~~Dl~~~ 88 (281)
T 3ppi_A 28 FEGASAIVSGGAGGLGEATVRRLHADG---LGVVIADLAAEKGKALADELG----------------NRAEFVSTNVTSE 88 (281)
T ss_dssp GTTEEEEEETTTSHHHHHHHHHHHHTT---CEEEEEESCHHHHHHHHHHHC----------------TTEEEEECCTTCH
T ss_pred cCCCEEEEECCCChHHHHHHHHHHHCC---CEEEEEeCChHHHHHHHHHhC----------------CceEEEEcCCCCH
Confidence 467889999987663 446777787 799999999988777655431 2688899998764
Q ss_pred CC---------CCCCccEEEEc
Q 002218 789 DS---------RLHGFDIGTCL 801 (952)
Q Consensus 789 pf---------~d~sFDVVVci 801 (952)
.. ..+..|+++..
T Consensus 89 ~~v~~~~~~~~~~~~id~lv~~ 110 (281)
T 3ppi_A 89 DSVLAAIEAANQLGRLRYAVVA 110 (281)
T ss_dssp HHHHHHHHHHTTSSEEEEEEEC
T ss_pred HHHHHHHHHHHHhCCCCeEEEc
Confidence 31 22468888876
No 500
>2dmy_A Spermatid perinuclear RNA-binding protein; DSRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.50.1.1
Probab=27.24 E-value=45 Score=30.19 Aligned_cols=72 Identities=10% Similarity=0.048 Sum_probs=49.1
Q ss_pred cccCCCChhhHHHhhhhhcccCcceeccccCCccccccchhhhhhhhhcccccccccccCCCcccCCCceeEEEEEeecc
Q 002218 388 TNWRGSFPREMLFMFCRQHWLSEPVFSTCSNSLKESSESSRFYEKSAALESAETGKECTSGGGTAASDNVRCEVKIFSKS 467 (952)
Q Consensus 388 ~~w~g~~pr~~l~~fc~~~~l~ep~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~c~v~~~s~~ 467 (952)
-+|..--|...|..+|..+ ..|.|... . .. |-.....|.|+|.|-.+.
T Consensus 11 ~~~~~~d~Kt~LqE~~Q~~--~~p~Y~~~--------~--------------------~~--Gp~H~~~F~~~v~v~g~~ 58 (97)
T 2dmy_A 11 LDSKAIDLMNALMRLNQIR--PGLQYKLL--------S--------------------QS--GPVHAPVFTMSVDVDGTT 58 (97)
T ss_dssp CCCCSSSCTHHHHHHHHHS--CSCCCEEE--------E--------------------EE--SCSSSCEEEEEEEETTEE
T ss_pred ccCCCCCHHHHHHHHHhcC--CCceEEEE--------E--------------------ee--CCCCCCeEEEEEEECCEE
Confidence 3688888999999999874 56666554 0 01 222234499999985431
Q ss_pred CCcccccCchhhhhhhhhhHhhhhhHHHHHHH
Q 002218 468 RDPILECSPKEFYKKQNESIENASLKVLSWLN 499 (952)
Q Consensus 468 ~~~~~~~~~~~~~~~~~dai~~a~l~~l~~~~ 499 (952)
+ ...=+..-+|=|+||.++|.-|.
T Consensus 59 ------~--~G~G~SKK~Aeq~AA~~aL~~L~ 82 (97)
T 2dmy_A 59 ------Y--EASGPSKKTAKLHVAVKVLQAMG 82 (97)
T ss_dssp ------E--EEEESSHHHHHHHHHHHHHHHHT
T ss_pred ------E--EEeeCCHHHHHHHHHHHHHHHhC
Confidence 2 22335667899999999998873
Done!