BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 002219
         (952 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|2V7B|A Chain A, Crystal Structures Of A Benzoate Coa Ligase From
           Burkholderia Xenovorans Lb400
 pdb|2V7B|B Chain B, Crystal Structures Of A Benzoate Coa Ligase From
           Burkholderia Xenovorans Lb400
          Length = 529

 Score = 33.5 bits (75), Expect = 0.60,   Method: Compositional matrix adjust.
 Identities = 24/91 (26%), Positives = 46/91 (50%), Gaps = 5/91 (5%)

Query: 635 DIPLLLPQEPEVLDDSSRGLIPNGLDYTTTKSASFRYQKAKIEPV-VTDMPMKGFVDDRD 693
           ++ ++L Q   VL+ +  G+   GL     K+ +F   K +  P  +    +K FV DR 
Sbjct: 443 EVEMVLVQHDAVLEAAVVGVDHGGL----VKTRAFVVLKREFAPSEILAEELKAFVKDRL 498

Query: 694 SPHHHLKTSLDVMTLPGTKSSDIEWWETQER 724
           +PH + +  + V  LP T +  I+ ++ +E+
Sbjct: 499 APHKYPRDIVFVDDLPKTATGKIQRFKLREQ 529


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.321    0.137    0.428 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 29,621,384
Number of Sequences: 62578
Number of extensions: 1269092
Number of successful extensions: 2511
Number of sequences better than 100.0: 2
Number of HSP's better than 100.0 without gapping: 0
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 2511
Number of HSP's gapped (non-prelim): 2
length of query: 952
length of database: 14,973,337
effective HSP length: 108
effective length of query: 844
effective length of database: 8,214,913
effective search space: 6933386572
effective search space used: 6933386572
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 56 (26.2 bits)