Query 002219
Match_columns 952
No_of_seqs 476 out of 2502
Neff 5.7
Searched_HMMs 46136
Date Thu Mar 28 19:13:14 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/002219.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/002219hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN02866 phospholipase D 100.0 1E-214 3E-219 1896.4 84.7 907 33-943 2-910 (1068)
2 KOG1329 Phospholipase D1 [Lipi 100.0 9E-148 2E-152 1296.2 48.4 703 38-945 37-746 (887)
3 PLN02352 phospholipase D epsil 100.0 1.8E-89 3.9E-94 808.8 43.3 459 315-943 125-650 (758)
4 PLN03008 Phospholipase D delta 100.0 2.6E-83 5.7E-88 756.7 44.2 492 315-944 172-760 (868)
5 PLN02270 phospholipase D alpha 100.0 2.7E-77 5.8E-82 706.4 42.3 459 315-941 143-698 (808)
6 PRK12452 cardiolipin synthetas 100.0 1.1E-51 2.4E-56 483.2 37.0 331 361-948 138-471 (509)
7 PRK01642 cls cardiolipin synth 100.0 9.5E-51 2.1E-55 473.7 36.7 326 361-948 114-445 (483)
8 PRK11263 cardiolipin synthase 100.0 2.8E-48 6E-53 443.4 35.7 326 359-948 4-333 (411)
9 COG1502 Cls Phosphatidylserine 100.0 2.7E-39 5.8E-44 371.7 35.0 336 361-948 58-400 (438)
10 PRK09428 pssA phosphatidylseri 100.0 8.3E-36 1.8E-40 343.7 33.5 356 361-941 23-394 (451)
11 PHA02820 phospholipase-D-like 100.0 1.8E-34 3.8E-39 331.3 31.4 337 372-949 25-372 (424)
12 PHA03003 palmytilated EEV memb 100.0 1.6E-34 3.4E-39 327.1 29.6 319 373-949 31-355 (369)
13 cd07297 PX_PLD2 The phosphoino 99.9 2.1E-27 4.5E-32 225.6 11.9 129 42-200 1-130 (130)
14 cd01254 PH_PLD Phospholipase D 99.9 7.6E-23 1.7E-27 197.6 12.5 121 213-335 1-121 (121)
15 cd07296 PX_PLD1 The phosphoino 99.9 6.2E-23 1.4E-27 199.3 10.9 130 42-200 1-135 (135)
16 cd06895 PX_PLD The phosphoinos 99.9 3E-21 6.4E-26 190.5 12.1 137 43-200 3-140 (140)
17 PRK05443 polyphosphate kinase; 99.8 1.1E-19 2.3E-24 218.8 26.5 274 370-948 345-639 (691)
18 TIGR03705 poly_P_kin polyphosp 99.8 3.8E-19 8.3E-24 213.0 21.8 275 369-948 335-630 (672)
19 PHA02820 phospholipase-D-like 99.7 9.6E-16 2.1E-20 176.9 15.9 156 741-948 4-160 (424)
20 cd00138 PLDc Phospholipase D. 99.6 2.5E-15 5.4E-20 152.1 15.1 157 362-575 10-169 (176)
21 cd00138 PLDc Phospholipase D. 99.6 7.3E-15 1.6E-19 148.7 14.3 156 745-948 2-160 (176)
22 PRK13912 nuclease NucT; Provis 99.5 3E-13 6.6E-18 139.0 13.5 134 763-948 32-165 (177)
23 PRK12452 cardiolipin synthetas 99.5 2.6E-13 5.6E-18 160.3 13.3 147 362-576 328-481 (509)
24 PRK13912 nuclease NucT; Provis 99.5 1.5E-12 3.3E-17 133.8 16.4 143 370-575 30-174 (177)
25 PHA03003 palmytilated EEV memb 99.4 9.2E-13 2E-17 150.1 14.3 142 375-575 218-363 (369)
26 PF13091 PLDc_2: PLD-like doma 99.3 1.4E-11 3.1E-16 117.8 11.8 119 770-948 2-120 (126)
27 KOG3603 Predicted phospholipas 99.2 6.5E-09 1.4E-13 117.0 27.6 147 374-575 73-225 (456)
28 PRK01642 cls cardiolipin synth 99.2 9.6E-11 2.1E-15 138.1 13.7 146 362-576 302-455 (483)
29 PF13091 PLDc_2: PLD-like doma 99.2 3.1E-10 6.7E-15 108.5 13.6 123 378-572 1-126 (126)
30 PRK11263 cardiolipin synthase 99.1 6.9E-10 1.5E-14 128.2 14.7 142 364-573 192-340 (411)
31 PRK05443 polyphosphate kinase; 99.1 5.9E-10 1.3E-14 135.3 12.7 124 767-949 351-487 (691)
32 cd06875 PX_IRAS The phosphoino 99.1 8.7E-10 1.9E-14 106.2 10.8 106 43-204 2-109 (116)
33 PF00787 PX: PX domain; Inter 98.9 3E-09 6.5E-14 99.5 8.4 106 45-200 5-113 (113)
34 cd06872 PX_SNX19_like_plant Th 98.9 1.1E-08 2.4E-13 97.3 10.0 101 45-198 2-105 (107)
35 cd06878 PX_SNX25 The phosphoin 98.9 6.6E-09 1.4E-13 101.7 8.5 107 45-200 10-127 (127)
36 cd06880 PX_SNX22 The phosphoin 98.8 2E-08 4.2E-13 96.0 11.1 105 45-205 2-107 (110)
37 PRK09428 pssA phosphatidylseri 98.8 3E-08 6.5E-13 115.8 14.5 143 764-946 35-183 (451)
38 cd06897 PX_SNARE The phosphoin 98.8 1.4E-08 3.1E-13 96.2 9.6 101 45-199 2-107 (108)
39 cd06870 PX_CISK The phosphoino 98.8 2.4E-08 5.2E-13 95.1 10.4 107 43-200 2-109 (109)
40 cd06877 PX_SNX14 The phosphoin 98.8 2.4E-08 5.1E-13 96.8 10.3 106 43-199 2-118 (119)
41 cd06882 PX_p40phox The phospho 98.8 3.7E-08 8E-13 96.0 11.1 116 43-202 2-120 (123)
42 cd07276 PX_SNX16 The phosphoin 98.8 3.3E-08 7.1E-13 94.3 10.3 103 45-200 5-110 (110)
43 cd06871 PX_MONaKA The phosphoi 98.8 3.3E-08 7.2E-13 95.9 10.1 103 45-204 9-114 (120)
44 cd01251 PH_centaurin_alpha Cen 98.7 8.4E-08 1.8E-12 90.5 11.5 100 213-336 1-100 (103)
45 PF00614 PLDc: Phospholipase D 98.7 2.8E-09 6E-14 77.3 0.5 27 473-499 2-28 (28)
46 cd06883 PX_PI3K_C2 The phospho 98.7 9.3E-08 2E-12 91.3 10.3 101 46-199 2-108 (109)
47 cd06876 PX_MDM1p The phosphoin 98.7 1.7E-07 3.6E-12 92.5 11.0 103 44-197 20-131 (133)
48 cd06873 PX_SNX13 The phosphoin 98.6 1.8E-07 3.8E-12 90.8 10.1 104 45-199 6-119 (120)
49 cd06890 PX_Bem1p The phosphoin 98.6 2.7E-07 5.9E-12 88.5 11.0 107 45-199 2-111 (112)
50 cd06887 PX_p47phox The phospho 98.6 4.3E-07 9.4E-12 87.8 12.0 112 45-201 3-117 (118)
51 cd07280 PX_YPT35 The phosphoin 98.6 2.4E-07 5.2E-12 89.8 10.0 108 45-198 4-119 (120)
52 cd06869 PX_UP2_fungi The phosp 98.6 3.5E-07 7.5E-12 88.7 10.6 83 62-198 32-117 (119)
53 cd06884 PX_PI3K_C2_68D The pho 98.6 3.5E-07 7.6E-12 87.6 10.3 101 45-198 3-109 (111)
54 cd01233 Unc104 Unc-104 pleckst 98.6 5E-07 1.1E-11 84.7 10.9 95 212-335 3-97 (100)
55 cd06093 PX_domain The Phox Hom 98.5 4.4E-07 9.5E-12 83.9 9.9 102 46-198 2-105 (106)
56 COG1502 Cls Phosphatidylserine 98.5 5E-07 1.1E-11 104.7 12.5 145 365-576 253-410 (438)
57 smart00312 PX PhoX homologous 98.5 2.8E-07 6.1E-12 85.9 8.3 87 63-198 12-105 (105)
58 KOG3603 Predicted phospholipas 98.5 9.8E-07 2.1E-11 99.9 13.7 163 740-949 47-217 (456)
59 cd01238 PH_Tec Tec pleckstrin 98.5 7.5E-07 1.6E-11 84.5 10.7 99 213-334 2-105 (106)
60 cd06888 PX_FISH The phosphoino 98.5 1.4E-06 3E-11 84.5 11.6 112 44-199 2-118 (119)
61 cd01260 PH_CNK Connector enhan 98.5 1.5E-06 3.2E-11 80.4 11.2 93 213-334 2-95 (96)
62 cd06886 PX_SNX27 The phosphoin 98.4 8E-07 1.7E-11 84.5 8.6 98 45-198 5-104 (106)
63 smart00155 PLDc Phospholipase 98.4 2.4E-07 5.2E-12 67.2 3.5 26 899-924 3-28 (28)
64 cd07279 PX_SNX20_21_like The p 98.4 1.3E-06 2.7E-11 83.7 9.4 104 46-199 3-111 (112)
65 cd07289 PX_PI3K_C2_alpha The p 98.4 1.9E-06 4.2E-11 82.1 10.4 100 45-198 1-107 (109)
66 cd07277 PX_RUN The phosphoinos 98.4 1.6E-06 3.5E-11 83.9 9.9 49 45-95 2-50 (118)
67 cd07300 PX_SNX20 The phosphoin 98.4 1.7E-06 3.8E-11 83.3 9.8 91 62-200 17-112 (114)
68 cd06881 PX_SNX15_like The phos 98.4 1.3E-06 2.9E-11 84.3 8.8 103 45-198 4-115 (117)
69 cd06867 PX_SNX41_42 The phosph 98.4 1.6E-06 3.5E-11 83.0 9.2 109 46-199 2-111 (112)
70 cd06865 PX_SNX_like The phosph 98.3 2.6E-06 5.7E-11 82.7 9.7 91 61-199 21-119 (120)
71 cd06862 PX_SNX9_18_like The ph 98.3 3.3E-06 7.1E-11 82.6 10.1 106 45-201 2-108 (125)
72 cd06874 PX_KIF16B_SNX23 The ph 98.3 4E-06 8.8E-11 82.2 10.6 49 45-95 2-50 (127)
73 cd01236 PH_outspread Outspread 98.3 4.8E-06 1E-10 79.0 10.5 79 245-334 22-102 (104)
74 PF00169 PH: PH domain; Inter 98.3 6.3E-06 1.4E-10 74.6 11.0 94 213-335 3-102 (104)
75 cd01265 PH_PARIS-1 PARIS-1 ple 98.3 5.1E-06 1.1E-10 77.3 10.3 77 245-335 15-93 (95)
76 KOG1259 Nischarin, modulator o 98.3 1.2E-06 2.5E-11 95.5 6.8 34 62-95 26-59 (490)
77 cd06861 PX_Vps5p The phosphoin 98.3 4.5E-06 9.7E-11 80.1 10.0 103 46-199 3-111 (112)
78 cd07301 PX_SNX21 The phosphoin 98.3 4.2E-06 9E-11 80.4 9.4 90 62-199 17-111 (112)
79 cd06879 PX_UP1_plant The phosp 98.3 3.1E-06 6.8E-11 83.6 8.5 89 62-199 43-137 (138)
80 cd06859 PX_SNX1_2_like The pho 98.2 5.1E-06 1.1E-10 79.5 9.7 102 46-198 3-112 (114)
81 cd07282 PX_SNX2 The phosphoino 98.2 5.5E-06 1.2E-10 81.0 9.4 116 46-200 3-124 (124)
82 cd01246 PH_oxysterol_bp Oxyste 98.2 1.2E-05 2.7E-10 72.5 11.1 75 245-334 13-90 (91)
83 cd06868 PX_HS1BP3 The phosphoi 98.2 4.9E-06 1.1E-10 80.9 8.9 88 62-199 19-119 (120)
84 cd07287 PX_RPK118_like The pho 98.2 4.6E-06 9.9E-11 80.9 8.3 92 63-198 17-116 (118)
85 cd06898 PX_SNX10 The phosphoin 98.2 7E-06 1.5E-10 78.9 9.5 90 61-199 16-112 (113)
86 cd06893 PX_SNX19 The phosphoin 98.2 3.5E-06 7.6E-11 83.2 7.4 34 166-199 98-131 (132)
87 cd01247 PH_GPBP Goodpasture an 98.2 1.6E-05 3.5E-10 73.5 11.4 75 245-334 13-90 (91)
88 cd01250 PH_centaurin Centaurin 98.2 1.4E-05 3.1E-10 72.5 10.5 91 213-334 1-93 (94)
89 cd01257 PH_IRS Insulin recepto 98.2 1.2E-05 2.6E-10 75.9 10.2 77 246-334 13-100 (101)
90 cd06864 PX_SNX4 The phosphoino 98.2 8E-06 1.7E-10 80.3 9.1 106 45-198 2-127 (129)
91 cd06866 PX_SNX8_Mvp1p_like The 98.1 1.2E-05 2.7E-10 76.3 9.8 87 62-199 17-104 (105)
92 cd06863 PX_Atg24p The phosphoi 98.1 1.1E-05 2.5E-10 77.9 9.6 91 62-200 18-118 (118)
93 cd06885 PX_SNX17_31 The phosph 98.1 8E-06 1.7E-10 77.4 8.2 86 62-199 17-102 (104)
94 cd07281 PX_SNX1 The phosphoino 98.1 1.2E-05 2.6E-10 78.5 9.5 116 46-199 3-123 (124)
95 cd01264 PH_melted Melted pleck 98.1 1.8E-05 4E-10 74.6 10.3 83 245-335 17-100 (101)
96 TIGR03705 poly_P_kin polyphosp 98.1 2.4E-05 5.1E-10 95.4 13.9 125 767-949 342-478 (672)
97 cd01252 PH_cytohesin Cytohesin 98.1 2.9E-05 6.2E-10 75.6 11.4 91 213-336 2-113 (125)
98 cd07288 PX_SNX15 The phosphoin 98.1 9.3E-06 2E-10 78.7 7.8 92 63-198 17-116 (118)
99 cd01235 PH_SETbf Set binding f 98.1 3.2E-05 7E-10 71.7 11.0 86 245-335 13-100 (101)
100 cd07290 PX_PI3K_C2_beta The ph 98.1 2.7E-05 5.9E-10 74.4 10.2 87 63-198 16-107 (109)
101 cd06889 PX_NoxO1 The phosphoin 98.1 4.8E-05 1E-09 73.9 11.9 109 45-199 7-120 (121)
102 PF00614 PLDc: Phospholipase D 98.0 2.2E-06 4.8E-11 62.3 1.9 26 899-924 3-28 (28)
103 cd07295 PX_Grd19 The phosphoin 98.0 2.2E-05 4.8E-10 75.9 9.2 90 62-200 18-114 (116)
104 cd07286 PX_SNX18 The phosphoin 98.0 2.5E-05 5.3E-10 76.6 8.9 88 62-200 19-107 (127)
105 cd01266 PH_Gab Gab (Grb2-assoc 98.0 4.1E-05 8.9E-10 72.8 10.2 83 245-334 17-106 (108)
106 cd06894 PX_SNX3_like The phosp 97.9 5.4E-05 1.2E-09 73.9 9.4 99 61-200 17-121 (123)
107 cd07285 PX_SNX9 The phosphoino 97.9 4.2E-05 9.1E-10 74.9 8.5 91 62-202 19-110 (126)
108 cd07293 PX_SNX3 The phosphoino 97.9 5.1E-05 1.1E-09 74.2 9.1 98 61-199 17-120 (123)
109 cd06860 PX_SNX7_30_like The ph 97.9 5.6E-05 1.2E-09 73.0 9.0 90 61-198 16-114 (116)
110 cd01244 PH_RasGAP_CG9209 RAS_G 97.8 0.00013 2.9E-09 68.5 10.5 79 245-334 19-97 (98)
111 PF15413 PH_11: Pleckstrin hom 97.7 0.00031 6.6E-09 67.5 11.7 90 245-335 14-112 (112)
112 smart00233 PH Pleckstrin homol 97.7 0.00049 1.1E-08 60.9 11.5 95 212-335 2-100 (102)
113 cd07294 PX_SNX12 The phosphoin 97.7 0.0002 4.4E-09 70.8 9.7 101 62-203 20-126 (132)
114 cd07283 PX_SNX30 The phosphoin 97.7 0.00019 4.2E-09 69.4 9.3 89 62-198 17-114 (116)
115 PF15409 PH_8: Pleckstrin homo 97.7 0.00023 5E-09 65.7 9.0 75 245-335 12-88 (89)
116 cd01241 PH_Akt Akt pleckstrin 97.5 0.00065 1.4E-08 64.1 10.1 92 212-335 2-101 (102)
117 smart00155 PLDc Phospholipase 97.5 8.2E-05 1.8E-09 54.0 3.1 23 474-496 3-25 (28)
118 KOG3964 Phosphatidylglycerolph 97.5 0.0071 1.5E-07 68.6 19.5 124 361-496 27-166 (469)
119 cd00821 PH Pleckstrin homology 97.5 0.00071 1.5E-08 59.3 9.0 78 245-334 14-95 (96)
120 PLN02866 phospholipase D 97.4 0.00061 1.3E-08 85.4 11.2 118 763-920 343-466 (1068)
121 cd07284 PX_SNX7 The phosphoino 97.3 0.0011 2.4E-08 64.3 8.8 89 62-198 17-114 (116)
122 cd01237 Unc112 Unc-112 pleckst 97.2 0.002 4.3E-08 61.3 8.9 82 245-336 18-103 (106)
123 PF13090 PP_kinase_C: Polyphos 97.2 0.085 1.8E-06 59.8 23.1 102 410-569 48-159 (352)
124 PF07894 DUF1669: Protein of u 97.1 0.0043 9.3E-08 68.5 12.0 150 363-572 119-278 (284)
125 cd01263 PH_anillin Anillin Ple 97.1 0.0034 7.4E-08 61.4 10.0 82 245-334 17-121 (122)
126 cd00900 PH-like Pleckstrin hom 97.1 0.006 1.3E-07 53.8 10.8 78 245-334 17-98 (99)
127 cd01245 PH_RasGAP_CG5898 RAS G 97.0 0.0039 8.3E-08 58.8 8.9 78 245-334 14-97 (98)
128 cd01230 PH_EFA6 EFA6 Pleckstri 97.0 0.0074 1.6E-07 58.7 11.0 103 212-336 1-111 (117)
129 cd01253 PH_beta_spectrin Beta- 96.9 0.0063 1.4E-07 57.1 10.0 80 245-334 21-103 (104)
130 cd01219 PH_FGD FGD (faciogenit 96.9 0.0092 2E-07 56.2 10.4 93 213-336 4-99 (101)
131 COG0855 Ppk Polyphosphate kina 96.8 0.12 2.5E-06 62.4 21.4 104 370-495 349-464 (696)
132 cd06896 PX_PI3K_C2_gamma The p 96.8 0.0068 1.5E-07 56.8 8.8 85 64-198 13-99 (101)
133 PF13918 PLDc_3: PLD-like doma 96.7 0.0034 7.4E-08 64.9 6.8 57 374-432 83-140 (177)
134 PF11495 Regulator_TrmB: Archa 96.6 0.018 4E-07 62.0 11.8 96 368-495 5-100 (233)
135 PF14593 PH_3: PH domain; PDB: 96.4 0.024 5.3E-07 54.0 9.7 85 211-335 13-98 (104)
136 KOG0930 Guanine nucleotide exc 96.3 0.016 3.6E-07 62.9 9.3 107 211-337 260-376 (395)
137 PLN02352 phospholipase D epsil 96.2 0.011 2.4E-07 72.9 8.3 61 372-437 452-524 (758)
138 PF13090 PP_kinase_C: Polyphos 96.2 0.0099 2.2E-07 67.1 7.0 100 800-949 51-157 (352)
139 cd06891 PX_Vps17p The phosphoi 95.9 0.032 6.9E-07 55.9 8.2 101 45-199 31-139 (140)
140 PLN03008 Phospholipase D delta 95.8 0.038 8.2E-07 68.7 9.9 59 373-436 567-637 (868)
141 cd01220 PH_CDEP Chondrocyte-de 95.7 0.086 1.9E-06 49.8 10.1 35 302-336 63-97 (99)
142 PF15410 PH_9: Pleckstrin homo 95.7 0.07 1.5E-06 51.8 9.7 103 212-336 1-118 (119)
143 PLN02270 phospholipase D alpha 95.1 0.042 9.2E-07 68.2 7.5 60 372-437 498-574 (808)
144 cd01256 PH_dynamin Dynamin ple 95.1 0.1 2.2E-06 49.0 8.1 80 246-336 18-105 (110)
145 cd01242 PH_ROK Rok (Rho- assoc 95.1 0.23 5E-06 47.7 10.5 87 245-335 18-109 (112)
146 KOG1329 Phospholipase D1 [Lipi 94.9 0.12 2.5E-06 64.4 10.3 120 372-496 565-722 (887)
147 PF13918 PLDc_3: PLD-like doma 94.5 0.32 7E-06 50.6 10.9 57 766-828 84-143 (177)
148 COG0855 Ppk Polyphosphate kina 94.5 0.091 2E-06 63.3 7.7 100 800-949 385-491 (696)
149 cd07299 PX_TCGAP The phosphoin 93.6 0.44 9.5E-06 45.4 8.8 32 63-95 25-57 (113)
150 cd01243 PH_MRCK MRCK (myotonic 93.4 0.57 1.2E-05 45.8 9.5 87 245-335 18-118 (122)
151 cd01218 PH_phafin2 Phafin2 Pl 92.8 1.1 2.4E-05 42.8 10.5 84 243-336 14-98 (104)
152 cd01259 PH_Apbb1ip Apbb1ip (Am 92.2 0.23 5E-06 47.9 5.0 94 213-335 2-107 (114)
153 KOG2059 Ras GTPase-activating 92.0 0.52 1.1E-05 57.3 8.8 150 172-354 520-676 (800)
154 cd01234 PH_CADPS CADPS (Ca2+-d 91.9 0.25 5.4E-06 47.0 4.7 84 245-336 17-110 (117)
155 cd07291 PX_SNX5 The phosphoino 91.3 0.34 7.5E-06 48.4 5.2 29 171-199 112-140 (141)
156 PF07894 DUF1669: Protein of u 91.0 1.6 3.4E-05 48.7 10.6 146 740-940 116-265 (284)
157 PF11495 Regulator_TrmB: Archa 90.2 0.49 1.1E-05 51.1 5.8 51 762-827 8-58 (233)
158 cd07292 PX_SNX6 The phosphoino 89.7 0.91 2E-05 45.4 6.6 31 169-199 110-140 (141)
159 KOG2527 Sorting nexin SNX11 [I 89.1 0.4 8.6E-06 47.4 3.6 88 61-198 33-128 (144)
160 PF09565 RE_NgoFVII: NgoFVII r 88.0 0.44 9.5E-06 53.5 3.6 48 896-946 76-129 (296)
161 cd07278 PX_RICS_like The phosp 86.3 5.5 0.00012 38.3 9.2 33 63-95 26-58 (114)
162 KOG2273 Membrane coat complex 85.3 1.1 2.4E-05 53.8 5.2 35 167-201 194-228 (503)
163 KOG0905 Phosphoinositide 3-kin 84.7 1.8 3.8E-05 55.6 6.6 86 63-197 1392-1482(1639)
164 KOG1117 Rho- and Arf-GTPase ac 84.1 8.5 0.00018 48.3 11.7 144 175-343 992-1137(1186)
165 COG3886 Predicted HKD family n 83.6 13 0.00027 39.4 11.2 110 366-497 30-144 (198)
166 cd07298 PX_RICS The phosphoino 81.8 11 0.00023 36.6 9.2 33 63-95 27-59 (115)
167 KOG0690 Serine/threonine prote 81.4 2.4 5.3E-05 48.0 5.5 96 211-336 15-116 (516)
168 cd06892 PX_SNX5_like The phosp 79.5 6.2 0.00013 39.8 7.2 25 175-199 116-140 (141)
169 cd01261 PH_SOS Son of Sevenles 77.7 23 0.0005 34.4 10.3 78 246-336 19-109 (112)
170 PLN00188 enhanced disease resi 76.1 8.6 0.00019 47.8 8.4 82 249-338 25-111 (719)
171 KOG3723 PH domain protein Melt 75.8 2 4.3E-05 51.4 2.8 108 204-336 728-836 (851)
172 KOG3751 Growth factor receptor 74.0 4.6 0.0001 48.1 5.2 99 212-336 318-424 (622)
173 PF06087 Tyr-DNA_phospho: Tyro 71.8 2.5 5.4E-05 50.1 2.5 46 897-943 345-407 (443)
174 cd01249 PH_oligophrenin Oligop 70.1 39 0.00084 32.6 9.5 34 300-333 67-102 (104)
175 KOG2101 Intermediate filament- 68.5 6.2 0.00013 45.4 4.7 36 60-95 132-172 (362)
176 COG3886 Predicted HKD family n 65.5 37 0.00081 36.0 9.1 122 763-939 38-159 (198)
177 PF12814 Mcp5_PH: Meiotic cell 65.5 46 0.00099 32.6 9.4 35 302-336 87-121 (123)
178 cd01222 PH_clg Clg (common-sit 62.2 33 0.00072 32.5 7.4 34 303-336 59-95 (97)
179 KOG2528 Sorting nexin SNX9/SH3 60.6 15 0.00032 43.2 5.7 87 63-200 205-292 (490)
180 KOG3964 Phosphatidylglycerolph 60.5 26 0.00056 40.9 7.5 148 764-944 39-187 (469)
181 cd01232 PH_TRIO Trio pleckstri 53.1 75 0.0016 31.0 8.4 35 301-335 74-111 (114)
182 KOG1090 Predicted dual-specifi 50.5 9 0.0002 48.7 2.0 79 245-335 1648-1730(1732)
183 KOG4424 Predicted Rho/Rac guan 45.5 62 0.0013 39.5 7.7 35 302-336 335-369 (623)
184 cd01240 PH_beta-ARK Beta adren 43.7 25 0.00054 34.2 3.3 79 245-335 18-97 (116)
185 KOG0521 Putative GTPase activa 38.5 28 0.0006 44.4 3.7 80 245-336 289-368 (785)
186 cd05394 RasGAP_RASA2 RASA2 (or 38.1 9.5 0.00021 43.4 -0.4 50 191-255 258-312 (313)
187 cd01227 PH_Dbs Dbs (DBL's big 37.7 1.5E+02 0.0034 29.7 8.0 28 309-336 88-115 (133)
188 PF08458 PH_2: Plant pleckstri 34.7 74 0.0016 31.0 5.1 35 302-336 69-103 (110)
189 COG5391 Phox homology (PX) dom 29.4 74 0.0016 38.9 5.1 27 165-191 218-244 (524)
190 cd01262 PH_PDK1 3-Phosphoinosi 28.1 3.8E+02 0.0082 25.3 8.3 72 247-335 15-87 (89)
191 cd01224 PH_Collybistin Collybi 25.3 3.1E+02 0.0067 26.8 7.5 35 301-335 70-106 (109)
192 cd05135 RasGAP_RASAL Ras GTPas 25.3 23 0.0005 40.7 -0.1 12 210-221 302-313 (333)
193 PTZ00267 NIMA-related protein 25.1 1.5E+02 0.0032 35.3 6.7 33 303-335 442-475 (478)
194 cd01231 PH_Lnk LNK-family Plec 25.1 3.3E+02 0.0071 26.4 7.4 30 304-334 77-106 (107)
195 cd01225 PH_Cool_Pix Cool (clon 24.2 3.8E+02 0.0083 26.3 7.9 80 247-335 28-108 (111)
196 PF06087 Tyr-DNA_phospho: Tyro 23.0 55 0.0012 39.0 2.5 38 899-939 100-141 (443)
197 TIGR00230 sfsA sugar fermentat 22.8 2.2E+02 0.0049 31.2 6.8 57 371-431 155-212 (232)
198 COG1489 SfsA DNA-binding prote 22.5 2.9E+02 0.0062 30.5 7.5 58 371-431 153-211 (235)
199 cd01228 PH_BCR-related BCR (br 21.6 1.9E+02 0.0041 27.6 5.1 78 253-335 3-93 (96)
200 KOG3784 Sorting nexin protein 21.1 2.3E+02 0.005 33.4 6.7 32 165-197 68-99 (407)
201 cd01258 PH_syntrophin Syntroph 20.1 3.8E+02 0.0082 26.1 7.0 83 245-334 17-107 (108)
No 1
>PLN02866 phospholipase D
Probab=100.00 E-value=1.3e-214 Score=1896.37 Aligned_cols=907 Identities=82% Similarity=1.348 Sum_probs=851.2
Q ss_pred CCCCcccCCCCCeEEEeeeeecCCCCCCcceeEEEEEEEecceEEEEEEehhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002219 33 EPEPARIFDELPKASIVSVSRPDAGDISPMLLSYTIEVQYKQFKWKLVKKASQVFYLHFALKRRAFFEEIQEKQEQVKEW 112 (952)
Q Consensus 33 ~~~~~~~~~~~p~v~I~~~er~~s~~~~~~~~~Y~Iel~~g~~~W~v~r~~~~f~~Lh~~lk~~~~~~~~~~~~~~~~~~ 112 (952)
+||+++||+|+|+|+|++|+|+++++++|..+.||||++|.+|||++.|+.+++++||++||+|+|++++|+||||+|+|
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (1068)
T PLN02866 2 LPESCRIFDELPKATIVSVSRPDAGDISPVLLSYTIELQYKQFKWTLYKKASQVLYLHFALKKRAFIEELHEKQEQVKEW 81 (1068)
T ss_pred CCcccchhhhCCcceEEEEecCCCCCCCceEEEEEEEEEEeeeeeehhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 58999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HhhcCCCCCccccccCcccccccc--ccccccccCCCCCCCCCCCCCCccccCCCcchHHHHHHHHHHHHHHhccccccc
Q 002219 113 LQNLGMGDHMAVVQEDDEGDEIAV--NHDESSKKRDVPANAALPVIRPALGRQHSMSDRAKVAMQQYLNHFLGNMDIVNS 190 (952)
Q Consensus 113 ~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~p~~~~lp~~~~~~~~~~~~~~r~~~~LE~YL~~lL~~~~~~n~ 190 (952)
|++|||++|+++++|++|+||+++ |++++++||.+||+|+||.+||+|||++++++|+|.+||+|||+||++++|+|+
T Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~yL~~~l~~~~~~n~ 161 (1068)
T PLN02866 82 LQNLGIGDHPAVVQDDDEPDDGTVPLHHDESAKNRDVPSSAALPVIRPALGRQQSISDRAKVAMQEYLNHFLGNLDIVNS 161 (1068)
T ss_pred HHhcCcccCccccccccccccccccccchhhcccCCCcchhhcceeccccCCCccccHHHHHHHHHHHHHHhccchhcCC
Confidence 999999999999999999999987 667899999999999999999999999999999999999999999999999999
Q ss_pred hhhhheeeeccCCCCCCCCCCcceeEEEeeecCCccCCCCCCcccccCCCccccCCcceEEEEEeCCeEEEEeCCCCCCc
Q 002219 191 REVCKFLEASKLSFSPEYGPKLKEDYVMAKHLPKISRNDDSRKCCCCPLFTCCNDNWQKVWAVLKPGFLALLADPFDTKP 270 (952)
Q Consensus 191 ~~l~~FlevS~~sf~~~~G~KgKEG~l~kr~~~~~~G~~~~~~~~~~~~~~~~~~rw~kRWfvVKdSfL~yv~d~~~~~~ 270 (952)
++||+|||||+|||+++||+|||||||+|||+++++|++.+.+||+|.||+||..+|+|||||||+|||+||++|++++|
T Consensus 162 ~~~~~FlevS~lsf~~~~g~K~~Eg~v~~r~~~~~~g~~~~~~~~~~~~~~~~~~~w~k~w~v~k~~~l~~~~~p~~~~~ 241 (1068)
T PLN02866 162 REVCKFLEVSKLSFSPEYGPKLKEGYVMVKHLPKIPKSDDSRGCFPCCCFSCCNDNWQKVWAVLKPGFLALLEDPFDAKP 241 (1068)
T ss_pred HhhhhheeeceeeehhhcCCCcceeEEEEeccCCCCCCCccCCccccccCCeecCchheeEEEEeccEEEEEecCCCCce
Confidence 99999999999999999999999999999999999998888999999899999999999999999999999999999999
Q ss_pred cEEEEEeCCCCCCCCCCCcccccccccccCCcceeEEEEeCceEEEEEecchhhHHHHHHHHHhccCCCCCCCCCCCCCC
Q 002219 271 MDIIVFDVLPASDGNGEGRVSLATEVKERNPLRHAFKVTCGVRSIRLRTRTGAKVRDWVAAINDAGLRPPEGWCHPHRFG 350 (952)
Q Consensus 271 ~~v~l~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~r~l~l~~~s~~~~~~w~~~i~~~~~~~~~~~~~~~rf~ 350 (952)
+||||||.+|++.+++++++.+++.+|++|+++|||+|.|++|+|+|+|+|++++++|.++|++++..++++|+++|||+
T Consensus 242 ~~v~lfD~~~~~~~~~~~~~~~~~~~k~~~~~~~~~~i~~~~r~l~l~~~s~~~~~~w~~ai~~~~~~~~~~~~~~hRF~ 321 (1068)
T PLN02866 242 LDIIVFDVLPASNGNGEGQISLAKEIKERNPLRFGFKVTCGNRSIRLRTKSSAKVKDWVAAINDAGLRPPEGWCHPHRFG 321 (1068)
T ss_pred eEEEEEecccccccCCCcceeecccccccCCCcceEEEecCceEEEEEECCHHHHHHHHHHHHHHHhccCccccccCcCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999988999999999999
Q ss_pred CCCCCcccCCCCCeEEEEecHHHHHHHHHHHHHhcccEEEEeeecCCceeEEEcCCCCchhHHHHHHHHHHhhCCcEEEE
Q 002219 351 SFAPPRGMTDDGSQAQWFVDGKAAFEAIASSIEDAKSEIFICGWWLCPELYLRRPFHNHASSRLDALLEAKAKQGVQIYI 430 (952)
Q Consensus 351 sfap~r~~~~~gn~v~~lvdG~~~f~al~~aI~~Ak~~I~I~~W~lsPe~Yl~rp~~d~~~~rL~~~L~~aA~rGVkVrI 430 (952)
||||+|..+..||.++||+||.+||++|++||++||++|+|++|||+||+||++|..+..+++|+++|++||++||+|||
T Consensus 322 SFAP~r~~~~~gN~vk~LvDG~dyF~AL~eAIe~AKesI~I~~WwlsPEiYL~Rp~~D~~g~RL~~lL~rKAkrGVkVrV 401 (1068)
T PLN02866 322 SFAPPRGLTEDGSQAQWFIDGHAAFEAIASAIENAKSEIFITGWWLCPELYLRRPFHDHESSRLDSLLEAKAKQGVQIYI 401 (1068)
T ss_pred CcCCCccccCCCCEEEEEeCHHHHHHHHHHHHHhcccEEEEEEccCCceEEEEecCCCchHHHHHHHHHHHHHCCCEEEE
Confidence 99999976667999999999999999999999999999999999999999999976678999999999999999999999
Q ss_pred EEccchhhhhhcchhhhHHHHhccCCCeEEEEcCCCcCCCcccccCcceEEEEeCCeEEEccccCCCCCcCCCCCCCCCC
Q 002219 431 LLYKEVALALKINSVYSKRKLLSIHENVRVLRYPDHFASGVYLWSHHEKLVIVDYQICFIGGLDLCFGRYDTFEHKIGDN 510 (952)
Q Consensus 431 Ll~d~~~~~l~~~s~~~k~~L~~l~~gI~V~r~P~~~~~~~~~~rhHrKivVIDg~vAFvGGiNL~~gRwDt~~H~l~D~ 510 (952)
|+||+++.++.+++.++++.|..+++||+|.++|.+++.+.++|||||||||||+++||+||+|||+|||||++|++.|+
T Consensus 402 LLyD~vg~al~~~S~~~k~~L~~lh~gI~V~r~P~~~~~~~ln~RhHRKIVVIDg~IAFvGGiNLc~GRWDT~~H~l~D~ 481 (1068)
T PLN02866 402 LLYKEVALALKINSVYSKRRLLGIHENVKVLRYPDHFSSGVYLWSHHEKLVIVDYQICFIGGLDLCFGRYDTPEHRVGDC 481 (1068)
T ss_pred EEECccccccccCchhhHHHHHHhCCCeEEEecCcccccCcccccCCCCeEEECCCEEEecCcccCCCccCCcccccccc
Confidence 99999987777888888777877889999999988776667899999999999999999999999999999999999999
Q ss_pred CCCcCCCCCCCCCCCCCCCCccccccccccCCCCCCCCeEEEEEEEEChHHHHHHHHHHHHHHhhhcCCCCCCCCccccC
Q 002219 511 PPLIWPGKDYYNPRESEPNSWEDTMRDELDRGKYPRMPWHDIHCALWGPPCRDVARHFVQRWNYAKRNKAPNEETIPLLM 590 (952)
Q Consensus 511 ~~~~~~G~dY~n~~~~d~~~~~~~~~d~~dr~~~pr~pWhDv~~~v~Gpaa~dl~~~F~qrWn~~~~~k~~~~~~~p~l~ 590 (952)
++++|||+||+|++..||++|++|++|++||...|||||||+||+|+||+|+||++||++|||++++.|.+++..+||||
T Consensus 482 ~~~~wPGkDY~Npr~~d~~~~~~~~~d~ldR~~~pRmPWHDV~~~V~GpAardLa~hFvqRWN~at~~k~~~~~~~~ll~ 561 (1068)
T PLN02866 482 PPVIWPGKDYYNPRESEPNSWEDTMKDELDRRKYPRMPWHDVHCALWGPPCRDVARHFVQRWNYAKRNKAPNEQAIPLLM 561 (1068)
T ss_pred cccccCcccccccccccccccccccccccccccCCCCCceEEEEEEECHHHHHHHHHHHHHHHHHhcccCcccccccccc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999998888899999
Q ss_pred CccccccccccCCcchhhhcccccccccccccccccccccCccCCCCCCCCCCCccccCCCCCCcCCCCCcccccccccc
Q 002219 591 PQHQMVIPHYMGRSREVEVESKNVEDNSKSIKRQDSFTFRSSLQDIPLLLPQEPEVLDDSSRGLIPNGLDYTTTKSASFR 670 (952)
Q Consensus 591 P~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~p~l~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 670 (952)
|+++|++|+|++..++.+.+.++.+++...+.|+++|.+.++.+++|+++|++......++++...++.+.++. ..|++
T Consensus 562 p~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~llP~~~~~~~~~~~~~~~~~~~~~~~-~~~~~ 640 (1068)
T PLN02866 562 PHHHMVIPHYLGGSEEEEIESKNQEDNQKGIARQDSFSSRSSLQDIPLLLPQEADATDGSGGGHKLNGMNSTNG-SLSFS 640 (1068)
T ss_pred ccccccccccccccccccccccccccccccccccccccccccccccccCCCCCccccccccccccccccccccc-ccccc
Confidence 99999999999999998888888888888999999998888899999999997766555555555544443332 35788
Q ss_pred cccccccccccCCCCCCccCCCCCCCcccccccccccCCCCCCCCchhhhhcccCCccCCCCccCCCCCCCCceEEEeec
Q 002219 671 YQKAKIEPVVTDMPMKGFVDDRDSPHHHLKTSLDVMTLPGTKSSDIEWWETQERGDQVGSTDETGQVGPRASCRCQIIRS 750 (952)
Q Consensus 671 ~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vQilRS 750 (952)
+++.+.+.+.++.|+.|+.|+...++....+ .....+....+.+||++|+..+|..+..++++++++++|.|||+||
T Consensus 641 ~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~QivRS 717 (1068)
T PLN02866 641 FRKSKIEPVLPDTPMKGFVDDLGFLDLSVKM---SSAERGSKESDSEWWETQERGDQVGSADEVGQVGPRVSCRCQVIRS 717 (1068)
T ss_pred ccccccccccccccccccccccccccccccc---cccccccccccccccccccccccccccccccccCCCCeEEEEEEee
Confidence 8999999999999999998876654433222 2233344556678999999999998888999999999999999999
Q ss_pred CCcccCCCcccHHHHHHHHHHHHHhccCeEEEEeeeeccCCCCChhHHHHHHHHHHHHHHHHHHcCCceEEEEEecCCCC
Q 002219 751 VSQWSAGTSQLEESIHCAYCSLIEKAEHFIYIENQFFISGLSGDEIIRNRVLESLYRRILRAYNEKKCFRVIIVIPLLPG 830 (952)
Q Consensus 751 ~~~wS~G~~~~E~sI~~ayl~~I~~A~~~IYIEnqyFis~~~~~~~v~n~I~~AL~~RI~~A~~~g~~vrV~IvlPl~pg 830 (952)
++.||+|++++|+||++||+++|++|+|||||||||||+++++++.+.|.|++||++||++|+++|++|+|+||+|++||
T Consensus 718 ~~~WS~G~~~~E~SI~~AYi~~I~~A~hfIYIENQFFis~~~~~~~i~N~I~~AL~~RI~rA~~~~~~frviIViP~~P~ 797 (1068)
T PLN02866 718 VSQWSAGTSQVEESIHAAYCSLIEKAEHFIYIENQFFISGLSGDDTIQNRVLEALYRRILRAHKEKKCFRVIIVIPLLPG 797 (1068)
T ss_pred cccccCCCCchHHHHHHHHHHHHHhcccEEEEecccccccccccccccchHHHHHHHHHHHHHhcCCCeEEEEEecCCCC
Confidence 99999999889999999999999999999999999999997777889999999999999999999999999999999999
Q ss_pred CCCCCCCCCchhHHHHHHHHHHHHHhhHHHHHHHHHHhcCCCcccccccccccccccccCCCCcccccceeeeeEEEEeC
Q 002219 831 FQGGVDDGGAASVRAIMHWQYRTICRGQNSILHNLYALLGPKTHDYISFYGLRAYGRLFEDGPVATSQVYVHSKVMIIDD 910 (952)
Q Consensus 831 f~g~~~d~~~~~~r~i~~~qy~ti~rg~~si~~~L~~~~Gv~~~~Yi~f~~lr~~~~~~~~g~~~te~iyvHSKlmIVDD 910 (952)
|+|++++++++++|+||||||+|||||++|++++|+++.|+++.+||+||+||+|+++..|++++||+||||||+|||||
T Consensus 798 F~G~v~~~~~~svr~Im~~Q~~tI~rG~~Si~~~L~~~~g~~p~dYisf~~LRn~~~l~~~~~~vteqIYVHsK~~IvDD 877 (1068)
T PLN02866 798 FQGGVDDGGAASVRAIMHWQYRTICRGKNSILHNLYDLLGPKTHDYISFYGLRAYGRLFEGGPLATSQIYVHSKIMIVDD 877 (1068)
T ss_pred cCCCCCCccchhHHHHHHHHHHHHHhhHHHHHHHHHHHhCCCHHHeEeeecccccccccCCCcccceeeEEEeeEEEEcC
Confidence 99999998889999999999999999999999999997899999999999999999998899999999999999999999
Q ss_pred cEEEEecccCCcCccCCCCCcceEEEEEchhhH
Q 002219 911 SIALIGSANINDRSLLGSRDSEVSVGLYLFILR 943 (952)
Q Consensus 911 ~~~iIGSANin~RSm~G~rDsEi~v~i~d~~~~ 943 (952)
++++|||||||+|||+|.+|||++++|.|++..
T Consensus 878 ~~~iiGSaNiN~RS~~G~rDsEia~~~~d~~~~ 910 (1068)
T PLN02866 878 RAALIGSANINDRSLLGSRDSEIGVVIEDKEFV 910 (1068)
T ss_pred cEEEEccccccccccccCcCcceeeeeeccccc
Confidence 999999999999999999999999999998743
No 2
>KOG1329 consensus Phospholipase D1 [Lipid transport and metabolism]
Probab=100.00 E-value=9.1e-148 Score=1296.22 Aligned_cols=703 Identities=41% Similarity=0.683 Sum_probs=607.1
Q ss_pred ccCCCCC----eEEEeeeeecCCCCCCcceeEEEEEEEecceEEEEEEehhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002219 38 RIFDELP----KASIVSVSRPDAGDISPMLLSYTIEVQYKQFKWKLVKKASQVFYLHFALKRRAFFEEIQEKQEQVKEWL 113 (952)
Q Consensus 38 ~~~~~~p----~v~I~~~er~~s~~~~~~~~~Y~Iel~~g~~~W~v~r~~~~f~~Lh~~lk~~~~~~~~~~~~~~~~~~~ 113 (952)
+.++.+| ++.|++++|+++...++..++|+++|.||+|+|+|++.++++..||+.|.++.....+.. +
T Consensus 37 ~~~~~l~~~~v~~~~~~~~~~~~~~~~~~~~~y~v~L~hG~l~~~i~~~~~~~~~~~~~l~~~~~~~~~~~--------~ 108 (887)
T KOG1329|consen 37 RRLEFLPGVPVFAAVVGVERPTSHPFVPSSGSYTVELLHGTLDWTIKKATKLHNMLHFHLHARLLGESFPD--------L 108 (887)
T ss_pred eccccccCCcccccccceecccccccccCCcceeeeeecCcEEEEEEecchhhhHHhHHHhhhhhcccccc--------c
Confidence 5555554 789999999999888889999999999999999999999999999999986443332111 1
Q ss_pred hhcCCCCCccccccCccccccccccccccccCCCCCCCCCCCCCCccccCCCcchHHHHHHHHHHHHHHhccccccchhh
Q 002219 114 QNLGMGDHMAVVQEDDEGDEIAVNHDESSKKRDVPANAALPVIRPALGRQHSMSDRAKVAMQQYLNHFLGNMDIVNSREV 193 (952)
Q Consensus 114 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~lp~~~~~~~~~~~~~~r~~~~LE~YL~~lL~~~~~~n~~~l 193 (952)
.++++-+ ...++|+ .|+..+ ..+-++++++|+||+.+|.++.+++++.+
T Consensus 109 ~~~~~~~----------------------~~~~~p~---~~~~~~------~~~~~~~~~~e~Ylt~~l~~~~~~~t~~~ 157 (887)
T KOG1329|consen 109 GRLNIND----------------------NHDEKPS---GPRSSL------NSSMEKRKTLENYLTVVLHKARYRRTHVI 157 (887)
T ss_pred ccccccc----------------------cccccCC---CccCCc------ccchhhhhhccchheeeechhhhhchhhh
Confidence 1111110 0133444 333211 11123356799999999999999999999
Q ss_pred hheeeeccCCCCCCCCCCcceeEEEeeecCCccCCCCCCcccccCCCccccCCcceEEEEEeCCeEEEEeCCCCCCccEE
Q 002219 194 CKFLEASKLSFSPEYGPKLKEDYVMAKHLPKISRNDDSRKCCCCPLFTCCNDNWQKVWAVLKPGFLALLADPFDTKPMDI 273 (952)
Q Consensus 194 ~~FlevS~~sf~~~~G~KgKEG~l~kr~~~~~~G~~~~~~~~~~~~~~~~~~rw~kRWfvVKdSfL~yv~d~~~~~~~~v 273 (952)
++|||+|.++|+.++|.++++||++++.. | .+| ..|+++|++||+||+.|++++..+.+.+|
T Consensus 158 ~~f~e~s~~~f~~~~~~~h~~g~v~~~~~----~----~~~----------~G~s~~w~~v~~s~~~~~~~~~~~~~~~I 219 (887)
T KOG1329|consen 158 YEFLENSRWSFSFDIGFAHKAGYVIFRVK----G----ARV----------PGWSKRWGRVKISFLQYCSGHRIGGWFPI 219 (887)
T ss_pred hcccccchhhhhccccccccccEEEEeec----C----Ccc----------ccceeEEEEeccchhhhhccccccceeee
Confidence 99999999999999999999999999842 1 111 23899999999999999999999999999
Q ss_pred EEEeCCCCCCCCCCCcccccccccccCCcceeEEEEeCceEEEEEecchhhHHHHHHHHHhccCCCCCCCCC-CCCCCCC
Q 002219 274 IVFDVLPASDGNGEGRVSLATEVKERNPLRHAFKVTCGVRSIRLRTRTGAKVRDWVAAINDAGLRPPEGWCH-PHRFGSF 352 (952)
Q Consensus 274 ~l~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~r~l~l~~~s~~~~~~w~~~i~~~~~~~~~~~~~-~~rf~sf 352 (952)
+.+|..+... ++....+.++++.+..|.+.++|.+.+++++|..++..+....+..+.+ .|||+||
T Consensus 220 l~~d~~~~~~-------------~~~~~~~~~~~~~~~~~~~~~~~~s~~~~r~~~~~~~~~~~g~gv~~~qd~Hr~~sf 286 (887)
T KOG1329|consen 220 LDNDGKPHQK-------------GSNESLRLGFTPMEKDRNLKLGCKSGRSFRGWPGTIFPQRKGCGVTLYQDAHRFDSF 286 (887)
T ss_pred eccCCccccC-------------CcccceEEeeEeechhhhhhheeccccccCCccceeeehhccCceeeeecccccCCc
Confidence 9999632111 1233457899999999999999999999999999999887666555555 9999999
Q ss_pred CCCcccCCCCCeEEEEecHHHHHHHHHHHHHhcccEEEEeeecCCceeEEEcCCCCchhHHHHHHHHHHhhCCcEEEEEE
Q 002219 353 APPRGMTDDGSQAQWFVDGKAAFEAIASSIEDAKSEIFICGWWLCPELYLRRPFHNHASSRLDALLEAKAKQGVQIYILL 432 (952)
Q Consensus 353 ap~r~~~~~gn~v~~lvdG~~~f~al~~aI~~Ak~~I~I~~W~lsPe~Yl~rp~~d~~~~rL~~~L~~aA~rGVkVrILl 432 (952)
+|+| .++.++|++||..||++|++||.+||+.|||+|||++||+||+||..++.++||+++|++||++||+|+|||
T Consensus 287 ~P~r----~~~~~kw~vd~~~~~edi~dAI~~Ar~~IyItgWwl~pel~L~Rp~~~~~~~rLdelLK~KAeeGVrV~ilv 362 (887)
T KOG1329|consen 287 APVR----TLDGGKWFVDGKKYWEDVADAIENARREIYITGWWLSPELYLVRPPKGPNDWRLDELLKRKAEEGVRVLILV 362 (887)
T ss_pred CCcc----cCCCceEEEchhhHHHHHHHHHHhhhhEEEEeccccCceEEEEccCCCCCceEHHHHHHHHHhCCcEEEEEE
Confidence 9999 588999999999999999999999999999999999999999999888889999999999999999999999
Q ss_pred ccchhhhhhcchhhhHHHHhccCCCeEEEEcCCCcCCC-cccccCcceEEEEeCCeEEEccccCCCCCcCCCCCCCCCCC
Q 002219 433 YKEVALALKINSVYSKRKLLSIHENVRVLRYPDHFASG-VYLWSHHEKLVIVDYQICFIGGLDLCFGRYDTFEHKIGDNP 511 (952)
Q Consensus 433 ~d~~~~~l~~~s~~~k~~L~~l~~gI~V~r~P~~~~~~-~~~~rhHrKivVIDg~vAFvGGiNL~~gRwDt~~H~l~D~~ 511 (952)
||++.+++.+++.|+++.+..+|+||+|+++|+++..+ .++|+||||+||||+.+|||||+|||+|||||++|+|+|+
T Consensus 363 ~kdv~s~~~i~S~~~k~~l~~lH~nV~vlr~P~~~~~~~~~~wtHHeK~VVVD~~v~fvGGlDLC~GRYDT~eH~L~d~- 441 (887)
T KOG1329|consen 363 WKDVTSALGINSHYEKTRLFFLHPNVKVLRCPRHPGSGPTTLWTHHEKLVVVDQEVAFVGGLDLCDGRYDTPEHPLFDT- 441 (887)
T ss_pred eccchhccccCchhHHHHHhhcCCCeEEEECCCCcCCCCceEEecceEEEEEcceeccccceeccccccCCcccccccc-
Confidence 99999999999999999999999999999999998777 5899999999999999999999999999999999999997
Q ss_pred CCcCCCCCCCCCCCCCCCCccccccccccCCCCCCCCeEEEEEEEEChHHHHHHHHHHHHHHhhhcCCCCCCCCccccCC
Q 002219 512 PLIWPGKDYYNPRESEPNSWEDTMRDELDRGKYPRMPWHDIHCALWGPPCRDVARHFVQRWNYAKRNKAPNEETIPLLMP 591 (952)
Q Consensus 512 ~~~~~G~dY~n~~~~d~~~~~~~~~d~~dr~~~pr~pWhDv~~~v~Gpaa~dl~~~F~qrWn~~~~~k~~~~~~~p~l~P 591 (952)
.++|+||||+|++.+|+++ +||.+.||||||||||+|.||+|+|+++||+||||++++.|.++...+|+|+|
T Consensus 442 ~~~~~gkDy~n~~~~~~~~--------~dr~~~PRmPWHDvh~~v~G~~ArDvarhF~QRWn~~~~~K~~~~~~~p~L~p 513 (887)
T KOG1329|consen 442 LQTWHGKDYHNPNFKDFVD--------IDRKGGPRMPWHDVHCKVDGPAARDVARHFEQRWNKQKREKKPYDDSLPLLLP 513 (887)
T ss_pred ccccccccccCcccccchh--------cccCCCCCCCceeeeeeeeChhHHHHHHHHHHHHHHHhcccCCCCccceeecC
Confidence 5789999999999888864 78899999999999999999999999999999999999999988888999999
Q ss_pred ccccccccccCCcchhhhcccccccccccccccccccccCccCCCCCCCCCCCccccCCCCCCcCCCCCccccccccccc
Q 002219 592 QHQMVIPHYMGRSREVEVESKNVEDNSKSIKRQDSFTFRSSLQDIPLLLPQEPEVLDDSSRGLIPNGLDYTTTKSASFRY 671 (952)
Q Consensus 592 ~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~p~l~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 671 (952)
.++++.|+|. .++
T Consensus 514 ~~~~~~~~~~----------------------------------------~~~--------------------------- 526 (887)
T KOG1329|consen 514 ISDITGPSEP----------------------------------------NEE--------------------------- 526 (887)
T ss_pred hhhhcCCCCc----------------------------------------ccc---------------------------
Confidence 8875544331 000
Q ss_pred ccccccccccCCCCCCccCCCCCCCcccccccccccCCCCCCCCchhhhhcccCCccCCCCccCCCCCCCCceEEEeecC
Q 002219 672 QKAKIEPVVTDMPMKGFVDDRDSPHHHLKTSLDVMTLPGTKSSDIEWWETQERGDQVGSTDETGQVGPRASCRCQIIRSV 751 (952)
Q Consensus 672 ~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vQilRS~ 751 (952)
++..++++. ++++ ...+.+.+|++||+
T Consensus 527 -------------------~~e~~~~q~-----------f~si-----------------------~~gs~~~~qvlrs~ 553 (887)
T KOG1329|consen 527 -------------------DPESWHVQV-----------FRSI-----------------------DGGSVAGPQVLRSA 553 (887)
T ss_pred -------------------ccccccccc-----------eeec-----------------------cCCcccchHHhhhh
Confidence 001111110 0111 11223358999999
Q ss_pred CcccCCCcccHHHHHHHHHHHHHhccCeEEEEeeeeccCCCCChhHHHHHHHHHHHHHHHHHHcCCceEEEEEecCCCCC
Q 002219 752 SQWSAGTSQLEESIHCAYCSLIEKAEHFIYIENQFFISGLSGDEIIRNRVLESLYRRILRAYNEKKCFRVIIVIPLLPGF 831 (952)
Q Consensus 752 ~~wS~G~~~~E~sI~~ayl~~I~~A~~~IYIEnqyFis~~~~~~~v~n~I~~AL~~RI~~A~~~g~~vrV~IvlPl~pgf 831 (952)
+.||+|..++|.||++||+++|++|||||||||||||+++...+.+.|+++++|+.||++|+++|++||||||||++|||
T Consensus 554 g~wS~g~~~~e~SIq~AYv~~Ir~a~hFIYIENQfFi~ss~~~~~~~n~v~~ela~rIv~a~ra~e~frVYIVIPL~Pgf 633 (887)
T KOG1329|consen 554 GLWSGGINEIEDSIQNAYVKAIRNAEHFIYIENQFFIGSSFNWDSVLNKVGDELALRIVKAIRAGEKFRVYIVIPLWPGF 633 (887)
T ss_pred cccccCCCchHHHHHHHHHHHHHhccceEEEeeeeEEeeccCCCcccchHHHHHHHHHHHHHhcCCceEEEEEEeCCccc
Confidence 99999999999999999999999999999999999999976667899999999999999999999999999999999999
Q ss_pred CCCCCCCCchhHHHHHHHHHHHHHhhHHHHHHHHHHhcCCCcccccccccccccccccC-CCCcccccceeeeeEEEEeC
Q 002219 832 QGGVDDGGAASVRAIMHWQYRTICRGQNSILHNLYALLGPKTHDYISFYGLRAYGRLFE-DGPVATSQVYVHSKVMIIDD 910 (952)
Q Consensus 832 ~g~~~d~~~~~~r~i~~~qy~ti~rg~~si~~~L~~~~Gv~~~~Yi~f~~lr~~~~~~~-~g~~~te~iyvHSKlmIVDD 910 (952)
+|+ ++++++++|+||||||||||+|++|+|++|++ .|.++.+|++|++||.|+.+.. ++++++|+||||||+|||||
T Consensus 634 EG~-~~p~~~svqaIl~wQyrTms~g~~sI~~~Lka-~g~d~~~yi~f~~lr~~g~~e~~~~~~~~emIYVHsK~mIvDD 711 (887)
T KOG1329|consen 634 EGD-DTPGSGSVQAILHWQYRTMSMGYKSIYKALKA-VGLDPADYIDFLGLRCLGNREEQAQRLRREMIYVHSKLMIVDD 711 (887)
T ss_pred cCC-CCCCcchHHHHHHHHHHHHhhhHHHHHHHHHH-hcCCccccceeeeeeeeeccccccccceEEEEEEeeeeEEecC
Confidence 999 89999999999999999999999999999999 7888899999999999999876 88999999999999999999
Q ss_pred cEEEEecccCCcCccCCCCCcceEEEEEchhhHHH
Q 002219 911 SIALIGSANINDRSLLGSRDSEVSVGLYLFILRWE 945 (952)
Q Consensus 911 ~~~iIGSANin~RSm~G~rDsEi~v~i~d~~~~~~ 945 (952)
+++||||||||+|||+|.||||||++++|+.+.+.
T Consensus 712 ~~vIIGSANINqRSm~G~RDSEIA~~~~d~~~~~s 746 (887)
T KOG1329|consen 712 EYVIIGSANINQRSMLGNRDSEIAMGIYDTNHVWS 746 (887)
T ss_pred CEEEEeecccchhhccCCccceeEEEEecccchhh
Confidence 99999999999999999999999999999997664
No 3
>PLN02352 phospholipase D epsilon
Probab=100.00 E-value=1.8e-89 Score=808.76 Aligned_cols=459 Identities=31% Similarity=0.475 Sum_probs=359.8
Q ss_pred EEEEecchhhHHHHHHHHHhccCCCCCCCCCCCCCCCCCCCcccCCCCCeEEEEecH----------------HHHHHHH
Q 002219 315 IRLRTRTGAKVRDWVAAINDAGLRPPEGWCHPHRFGSFAPPRGMTDDGSQAQWFVDG----------------KAAFEAI 378 (952)
Q Consensus 315 l~l~~~s~~~~~~w~~~i~~~~~~~~~~~~~~~rf~sfap~r~~~~~gn~v~~lvdG----------------~~~f~al 378 (952)
+.++.....+..-|...|.... -.+ --..|.|.| .|+.|++|.|+ .+||++|
T Consensus 125 ~~~~~~~~~~~~~~~~g~~~~~-~~g-------vp~~~f~~r----~g~~v~lyqdah~~~~~~p~i~l~~~~~~~f~al 192 (758)
T PLN02352 125 FMLWFRPAELEPTWCKILENGS-FQG-------LRNATFPQR----SNCHVILYQDAHHCSTFQPPVDLCGSPRKLWEDV 192 (758)
T ss_pred EEEEEEEhhhCcchhhcccCCC-cCC-------cCCcccccC----CCCEEEEEecCCCccccCCcceeecCHHHHHHHH
Confidence 5566666666667877774321 011 113677877 58888888775 6789999
Q ss_pred HHHHHhcccEEEEeeecCCceeEEEcCCC----CchhHHHHHHHHHHhhCCcEEEEEEccchhhhhhcch-----hhhHH
Q 002219 379 ASSIEDAKSEIFICGWWLCPELYLRRPFH----NHASSRLDALLEAKAKQGVQIYILLYKEVALALKINS-----VYSKR 449 (952)
Q Consensus 379 ~~aI~~Ak~~I~I~~W~lsPe~Yl~rp~~----d~~~~rL~~~L~~aA~rGVkVrILl~d~~~~~l~~~s-----~~~k~ 449 (952)
.+||.+||++|+|++|+++|+++|.|+.. ++.+.+|.++|++||++||+|+||+||+.++...+.. .....
T Consensus 193 ~eAI~~Ar~sI~I~gW~~d~~i~L~R~~~~~~p~~~g~~LgdLLk~KA~eGV~VrLLvWDd~~s~~~~~~~g~m~th~~~ 272 (758)
T PLN02352 193 YKAIEGAKHLIYIAGWSFNPKMVLVRDPETDIPHARGVKLGELLKRKAEEGVAVRVMLWDDETSLPIIKNKGVMGTHDED 272 (758)
T ss_pred HHHHHhhccEEEEEEEEecCCceeccCcccccccccchHHHHHHHHHHHCCCEEEEEEEcCCCcccccccccccccchHH
Confidence 99999999999999999999999998632 2467999999999999999999999998664311110 01111
Q ss_pred HHh-ccCCCeEEEEcCCCcCCCcccccCcceEEEEeCC----------eEEEccccCCCCCcCCCCCCCCCCCCCcCCCC
Q 002219 450 KLL-SIHENVRVLRYPDHFASGVYLWSHHEKLVIVDYQ----------ICFIGGLDLCFGRYDTFEHKIGDNPPLIWPGK 518 (952)
Q Consensus 450 ~L~-~l~~gI~V~r~P~~~~~~~~~~rhHrKivVIDg~----------vAFvGGiNL~~gRwDt~~H~l~D~~~~~~~G~ 518 (952)
.+. -.|.+|.+...|..-...+..|+||||+||||+. +|||||+|||+|||||++|++.|.....++++
T Consensus 273 ~~~~f~h~~V~~~l~pr~~~~~~~~~SHHQK~VVID~~~~~~~~~r~~vAFVGGIDLc~GRwDT~~H~l~d~l~t~~~~~ 352 (758)
T PLN02352 273 AFAYFKHTKVVCKLCPRLHKKFPTLFAHHQKTITVDTRANDSISEREIMSFVGGLDLCDGRYDTEEHSLFRTLNTESHCQ 352 (758)
T ss_pred HHhhccCCceEEeeccccccccccccccccceEEEccCCCCCccccceEEEEcceeccCCccCCccCCcccccccccccc
Confidence 111 1367888765553222235779999999999986 99999999999999999999999988888888
Q ss_pred CCCCCCCCCCCCccccccccccCCCCCCCCeEEEEEEEEChHHHHHHHHHHHHHHhhhcCCCCCCCCccccCCccccccc
Q 002219 519 DYYNPRESEPNSWEDTMRDELDRGKYPRMPWHDIHCALWGPPCRDVARHFVQRWNYAKRNKAPNEETIPLLMPQHQMVIP 598 (952)
Q Consensus 519 dY~n~~~~d~~~~~~~~~d~~dr~~~pr~pWhDv~~~v~Gpaa~dl~~~F~qrWn~~~~~k~~~~~~~p~l~P~~~~~~~ 598 (952)
||+|+... ...++.+.|||||||+||+|+||||+||+++|+||||.+++.. +++|...
T Consensus 353 Df~~~~~~----------g~~~~~g~PR~PWHDvh~~V~GpAA~Dv~~~F~qRW~~~~~~~--------~l~p~~~---- 410 (758)
T PLN02352 353 DFYQTSIA----------GAKLQKGGPREPWHDAHACIVGEAAWDVLTNFEQRWTKQCNPS--------VLVPTSS---- 410 (758)
T ss_pred cccccccc----------cccCCCCCCCCCcEeEEEEEECHHHHHHHHHHHHHHhhccCcc--------ccCCccc----
Confidence 99886421 1122346799999999999999999999999999999876432 2233210
Q ss_pred cccCCcchhhhcccccccccccccccccccccCccCCCCCCC--CCCCccccCCCCCCcCCCCCcccccccccccccccc
Q 002219 599 HYMGRSREVEVESKNVEDNSKSIKRQDSFTFRSSLQDIPLLL--PQEPEVLDDSSRGLIPNGLDYTTTKSASFRYQKAKI 676 (952)
Q Consensus 599 ~y~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~p~l~--p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 676 (952)
++.+. |..
T Consensus 411 -------------------------------------~~~~~~~p~~--------------------------------- 420 (758)
T PLN02352 411 -------------------------------------IRNLVHQPGS--------------------------------- 420 (758)
T ss_pred -------------------------------------ccccccCCCC---------------------------------
Confidence 00000 000
Q ss_pred cccccCCCCCCccCCCCCCCcccccccccccCCCCCCCCchhhhhcccCCccCCCCccCCCCCCCCceEEEeecCCcccC
Q 002219 677 EPVVTDMPMKGFVDDRDSPHHHLKTSLDVMTLPGTKSSDIEWWETQERGDQVGSTDETGQVGPRASCRCQIIRSVSQWSA 756 (952)
Q Consensus 677 ~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vQilRS~~~wS~ 756 (952)
.....++|.|||+||++.||+
T Consensus 421 -----------------------------------------------------------~~~~~~~w~VQv~RSid~~sa 441 (758)
T PLN02352 421 -----------------------------------------------------------SESNNRNWKVQVYRSIDHVSA 441 (758)
T ss_pred -----------------------------------------------------------CcccCCcccceEEEecCcccc
Confidence 001245789999999999998
Q ss_pred CC----cccHHHHHHHHHHHHHhccCeEEEEeeeeccCCC-----CChhHHHHHHHHHHHHHHHHHHcCCceEEEEEecC
Q 002219 757 GT----SQLEESIHCAYCSLIEKAEHFIYIENQFFISGLS-----GDEIIRNRVLESLYRRILRAYNEKKCFRVIIVIPL 827 (952)
Q Consensus 757 G~----~~~E~sI~~ayl~~I~~A~~~IYIEnqyFis~~~-----~~~~v~n~I~~AL~~RI~~A~~~g~~vrV~IvlPl 827 (952)
+. ...|+||++||++||++||||||||||||++++. .+..+.|.|..+|++||.+|++++++|+|+||+|+
T Consensus 442 ~~~P~~~~~erSIq~AYi~AIr~AqhfIYIENQYFiss~~~w~~~~~~~~~N~I~~eIa~kI~~kir~~e~f~V~IViP~ 521 (758)
T PLN02352 442 SHMPRNLPVERSIHEAYVEAIRRAERFIYIENQYFIGGCHLWEKDNHCGCTNLIPIEIALKIASKIRAKERFAVYILIPM 521 (758)
T ss_pred ccCCCCCchhhHHHHHHHHHHHhhhhEEEEehhhhhccccccccccccchhcchHHHHHHHHHHHHhCCCCCEEEEEECC
Confidence 64 2369999999999999999999999999998742 13468999999999999999999999999999999
Q ss_pred CCCCCCCCCCCCchhHHHHHHHHHHHHHhhHHHHHHHHHHhcCC--CcccccccccccccccccCCCCcc----------
Q 002219 828 LPGFQGGVDDGGAASVRAIMHWQYRTICRGQNSILHNLYALLGP--KTHDYISFYGLRAYGRLFEDGPVA---------- 895 (952)
Q Consensus 828 ~pgf~g~~~d~~~~~~r~i~~~qy~ti~rg~~si~~~L~~~~Gv--~~~~Yi~f~~lr~~~~~~~~g~~~---------- 895 (952)
.|++. . .+.++++||||||+||+++..+|.+.|++ +|. +|.+||+|||||+++....|. ++
T Consensus 522 ~PeG~---~--e~~~vq~il~wq~~TM~~~y~~I~~~L~~-~g~~~~P~dYl~F~cL~n~e~~~~g~-~~~~~~p~~~~~ 594 (758)
T PLN02352 522 WPEGV---P--ESEPVQDILHWTRETMAMMYKLIGEAIQE-SGEPGHPRDYLNFFCLANREEKRKGE-FVPPYSPHQKTQ 594 (758)
T ss_pred CCCCC---c--chhHHHHHHHHHHHHHHHHHHHHHHHHHH-cCccCChhHheeeecccccccccCCc-cccccCCCCCch
Confidence 99833 2 35689999999999999999999999998 674 689999999999997664332 21
Q ss_pred --------cccceeeeeEEEEeCcEEEEecccCCcCccCCCCCcceEEEEEchhhH
Q 002219 896 --------TSQVYVHSKVMIIDDSIALIGSANINDRSLLGSRDSEVSVGLYLFILR 943 (952)
Q Consensus 896 --------te~iyvHSKlmIVDD~~~iIGSANin~RSm~G~rDsEi~v~i~d~~~~ 943 (952)
.++||||||+|||||+++||||||||+|||.|.||||||+.+++++..
T Consensus 595 ~~~~~~~rr~~IYVHSKlMIVDD~~viIGSANIN~RSM~G~rDSEia~~~~~~~~~ 650 (758)
T PLN02352 595 YWNAQKNRRFMVYVHSKLMIVDDTYILIGSANVNQRSMDGCRDTEIAIGCYQSKNG 650 (758)
T ss_pred hhhcccccceeEEEeeeEEEEcCcEEEEcccccccccccCcccchhhhcccccccC
Confidence 247999999999999999999999999999999999999999998643
No 4
>PLN03008 Phospholipase D delta
Probab=100.00 E-value=2.6e-83 Score=756.71 Aligned_cols=492 Identities=33% Similarity=0.523 Sum_probs=363.3
Q ss_pred EEEEecchhhHHHHHHHHHhccCCCCCCCCCCCCCCCCCCCcccCCCCCeEEEEecHH--------------------HH
Q 002219 315 IRLRTRTGAKVRDWVAAINDAGLRPPEGWCHPHRFGSFAPPRGMTDDGSQAQWFVDGK--------------------AA 374 (952)
Q Consensus 315 l~l~~~s~~~~~~w~~~i~~~~~~~~~~~~~~~rf~sfap~r~~~~~gn~v~~lvdG~--------------------~~ 374 (952)
+.|....-.+..-|...|.....-.+ --..|.|.| .|+.|++|.|+. ..
T Consensus 172 v~lqf~pv~~~~~~~~gv~~~~~~~g-------vp~t~Fp~r----~g~~VtlYqdAhv~d~~~p~i~l~~g~~y~~~rc 240 (868)
T PLN03008 172 IDMKFTPFDQIHSYRCGIAGDPERRG-------VRRTYFPVR----KGSQVRLYQDAHVMDGTLPAIGLDNGKVYEHGKC 240 (868)
T ss_pred EEEEEEEccccccccccccCCcCCCC-------CCCccccCC----CCCEeEEeccCCCCCCCCCccccCCCcccccccc
Confidence 45556666666668776654211111 123678888 589999998864 47
Q ss_pred HHHHHHHHHhcccEEEEeeecCCceeEEEcCCC--CchhHHHHHHHHHHhhCCcEEEEEEccchhhhhhc----------
Q 002219 375 FEAIASSIEDAKSEIFICGWWLCPELYLRRPFH--NHASSRLDALLEAKAKQGVQIYILLYKEVALALKI---------- 442 (952)
Q Consensus 375 f~al~~aI~~Ak~~I~I~~W~lsPe~Yl~rp~~--d~~~~rL~~~L~~aA~rGVkVrILl~d~~~~~l~~---------- 442 (952)
+++|++||.+||+.|||+|||++||+||+|+.. .+...+|+++|++||++||+|+|||||+..+...+
T Consensus 241 wedi~~AI~~Ak~~IyI~gWsl~~ei~L~R~~~~~~~~~~~Lg~LLk~KA~eGVrV~ilvwdd~ts~~~~~~~~~g~m~t 320 (868)
T PLN03008 241 WEDICYAISEAHHMIYIVGWSIFHKIKLVRETKVPRDKDMTLGELLKYKSQEGVRVLLLVWDDKTSHDKFGIKTPGVMGT 320 (868)
T ss_pred HHHHHHHHHhhhheEEEeceeecceeEEecCCCCCCCCCccHHHHHHHHHHCCCEEEEEEeccccccccccccccccccc
Confidence 899999999999999999999999999999742 23578999999999999999999999987653111
Q ss_pred chhhhHHHHhccCCCeEEEEcCCC------cC--------------CCcccccCcceEEEEeCC--------eEEEcccc
Q 002219 443 NSVYSKRKLLSIHENVRVLRYPDH------FA--------------SGVYLWSHHEKLVIVDYQ--------ICFIGGLD 494 (952)
Q Consensus 443 ~s~~~k~~L~~l~~gI~V~r~P~~------~~--------------~~~~~~rhHrKivVIDg~--------vAFvGGiN 494 (952)
...-+ ..+. .|++|.+...|.. +. ...++|+||||+||||+. +|||||+|
T Consensus 321 hdeet-~~~f-~h~~v~~~l~pr~~~~~~~~~~~~~~~~~~iy~~~~~~~~~sHHQK~VVID~~~~~~~r~~vAFvGGiD 398 (868)
T PLN03008 321 HDEET-RKFF-KHSSVICVLSPRYASSKLGLFKQQASPIFSIYVMTVVGTLFTHHQKCVLVDTQAVGNNRKVTAFIGGLD 398 (868)
T ss_pred ccHHH-HHhh-cCCCeeEEECCCccccccchhhccccccccccccccccccccccceEEEEccCCCCCccceEEEEccee
Confidence 00111 2222 4789998877742 00 113679999999999995 99999999
Q ss_pred CCCCCcCCCCCCCCCCCCCcCCCCCCCCCCCCCCCCccccccccccCCCCCCCCeEEEEEEEEChHHHHHHHHHHHHHHh
Q 002219 495 LCFGRYDTFEHKIGDNPPLIWPGKDYYNPRESEPNSWEDTMRDELDRGKYPRMPWHDIHCALWGPPCRDVARHFVQRWNY 574 (952)
Q Consensus 495 L~~gRwDt~~H~l~D~~~~~~~G~dY~n~~~~d~~~~~~~~~d~~dr~~~pr~pWhDv~~~v~Gpaa~dl~~~F~qrWn~ 574 (952)
||+|||||++|++.++....|+ +||.|++.. ++...|++||||+|++|+||+|++|+++|.+||+.
T Consensus 399 Lc~gRwDT~~H~l~~~l~t~~~-~D~~np~~~-------------~~~~~p~~PWHDvh~rVeGPaV~dL~~~F~qRW~~ 464 (868)
T PLN03008 399 LCDGRYDTPEHRILHDLDTVFK-DDFHNPTFP-------------AGTKAPRQPWHDLHCRIDGPAAYDVLINFEQRWRK 464 (868)
T ss_pred ccCCccCCcCCCcccccccccc-ccccCcccc-------------CCCCCCCCCeEEEEEEEECHHHHHHHHHHHHHHHH
Confidence 9999999999999887777776 899987632 24567899999999999999999999999999999
Q ss_pred hhcCCCCCCCCccccCCccccccccccCCcchhhhcccccccccccccccccccccCccCCCCCCCCCCCccccCCCCCC
Q 002219 575 AKRNKAPNEETIPLLMPQHQMVIPHYMGRSREVEVESKNVEDNSKSIKRQDSFTFRSSLQDIPLLLPQEPEVLDDSSRGL 654 (952)
Q Consensus 575 ~~~~k~~~~~~~p~l~P~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~p~l~p~~~~~~~~~~~~~ 654 (952)
+++.+..... . +| +..+.+|....+.| ++.++++.... ..++.
T Consensus 465 aTg~~~~~~~-------~------k~---------~~~~~~d~l~~~~~------------~~~~~~p~~~~---~~~~~ 507 (868)
T PLN03008 465 ATRWKEFSLR-------L------KG---------KTHWQDDALIRIGR------------ISWILSPVFKF---LKDGT 507 (868)
T ss_pred hhCccccccc-------c------cc---------ccccccchhcchhh------------cccccCCCccc---ccccc
Confidence 9875421000 0 00 00000111122222 11111111000 00000
Q ss_pred cCCCCCcccccccccccccccccccccCCCCCCccCCCCCCCcccccccccccCCCCCCCCchhhhhcccCCccCCCCcc
Q 002219 655 IPNGLDYTTTKSASFRYQKAKIEPVVTDMPMKGFVDDRDSPHHHLKTSLDVMTLPGTKSSDIEWWETQERGDQVGSTDET 734 (952)
Q Consensus 655 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 734 (952)
...|. .+...|-.
T Consensus 508 --------------------------~~~~~----------------------------~~~~~~~~------------- 520 (868)
T PLN03008 508 --------------------------SIIPE----------------------------DDPCVWVS------------- 520 (868)
T ss_pred --------------------------ccccC----------------------------CCCccCcc-------------
Confidence 00000 00000100
Q ss_pred CCCCCCCCceEEEeecCCcccCCC-c-----------------ccHHHHHHHHHHHHHhccCeEEEEeeeeccCCC----
Q 002219 735 GQVGPRASCRCQIIRSVSQWSAGT-S-----------------QLEESIHCAYCSLIEKAEHFIYIENQFFISGLS---- 792 (952)
Q Consensus 735 ~~~~~~~~~~vQilRS~~~wS~G~-~-----------------~~E~sI~~ayl~~I~~A~~~IYIEnqyFis~~~---- 792 (952)
.-...+++.||++||++.||+.. + .+|.||++||+++|++||||||||||||++++.
T Consensus 521 -~~~d~~~w~vQifRSId~~sa~g~P~~~~~~~~~~l~~gk~~~ie~SIq~aYi~aIr~A~hFIYIENQYFiss~~~w~~ 599 (868)
T PLN03008 521 -KEDDPENWHVQIFRSIDSGSVKGFPKYEDEAEAQHLECAKRLVVDKSIQTAYIQTIRSAQHFIYIENQYFLGSSYAWPS 599 (868)
T ss_pred -ccCCCCccccceeeecCchhhcCCCCCcchhhhhccccccccchhhhHHHHHHHHHHhhccEEEEehhhhhcccccccc
Confidence 00123567899999999999732 2 268999999999999999999999999999852
Q ss_pred -CChhHHHHHHHHHHHHHHHHHHcCCceEEEEEecCCCCCCCCCCCCCchhHHHHHHHHHHHHHhhHHHHHHHHHHhcC-
Q 002219 793 -GDEIIRNRVLESLYRRILRAYNEKKCFRVIIVIPLLPGFQGGVDDGGAASVRAIMHWQYRTICRGQNSILHNLYALLG- 870 (952)
Q Consensus 793 -~~~~v~n~I~~AL~~RI~~A~~~g~~vrV~IvlPl~pgf~g~~~d~~~~~~r~i~~~qy~ti~rg~~si~~~L~~~~G- 870 (952)
.+..+.|.|..+|+.||.++++++++|+|+||+|+.|+ |+ ++++++|+||+|||+||+++..+++++|++ .|
T Consensus 600 ~~~~~~~n~I~~eia~kI~~ki~~~e~f~V~IViP~~pe--G~---~~sg~vq~Il~wq~~TM~~~~~~I~~~L~~-~~~ 673 (868)
T PLN03008 600 YRDAGADNLIPMELALKIVSKIRAKERFAVYVVIPLWPE--GD---PKSGPVQEILYWQSQTMQMMYDVIAKELKA-VQS 673 (868)
T ss_pred ccccccccchhHHHHHHHHHHHhCCCCCEEEEEECCCCC--CC---CCcchHHHHHHHHHHHHHHHHHHHHHHHHh-hcc
Confidence 24478999999999999999999999999999999997 33 345679999999999999999999999998 54
Q ss_pred -CCcccccccccccccccccC-----CCCcccc-------cceeeeeEEEEeCcEEEEecccCCcCccCCCCCcceEEEE
Q 002219 871 -PKTHDYISFYGLRAYGRLFE-----DGPVATS-------QVYVHSKVMIIDDSIALIGSANINDRSLLGSRDSEVSVGL 937 (952)
Q Consensus 871 -v~~~~Yi~f~~lr~~~~~~~-----~g~~~te-------~iyvHSKlmIVDD~~~iIGSANin~RSm~G~rDsEi~v~i 937 (952)
.++.+|++||+||+++...+ .+..+++ +||||||+|||||++++|||||||.|||.|.||+|+++.+
T Consensus 674 d~~p~dyl~fy~L~~~e~~~~~~~~~~~~~~~~a~~~rr~~IYvHsK~~ivDd~~~~iGSaN~n~RS~~~~Rd~E~~~~~ 753 (868)
T PLN03008 674 DAHPLDYLNFYCLGKREQLPDDMPATNGSVVSDSYNFQRFMIYVHAKGMIVDDEYVLMGSANINQRSMAGTKDTEIAMGA 753 (868)
T ss_pred cCCccCEEEEecccccccccCCCCCCCCchhhhhhhccceeEEEeeeEEEECCCEEEEeccccCHhhccCCCCceEeEEe
Confidence 46779999999999976632 2233343 7999999999999999999999999999999999999999
Q ss_pred EchhhHH
Q 002219 938 YLFILRW 944 (952)
Q Consensus 938 ~d~~~~~ 944 (952)
+++...|
T Consensus 754 ~~~~~~~ 760 (868)
T PLN03008 754 YQPNHTW 760 (868)
T ss_pred ccccccc
Confidence 9887654
No 5
>PLN02270 phospholipase D alpha
Probab=100.00 E-value=2.7e-77 Score=706.40 Aligned_cols=459 Identities=31% Similarity=0.514 Sum_probs=343.2
Q ss_pred EEEEecchhhHHHHHHHHHhccCCCCCCCCCCCCCCCCCCCcccCCCCCeEEEEecHH--------------------HH
Q 002219 315 IRLRTRTGAKVRDWVAAINDAGLRPPEGWCHPHRFGSFAPPRGMTDDGSQAQWFVDGK--------------------AA 374 (952)
Q Consensus 315 l~l~~~s~~~~~~w~~~i~~~~~~~~~~~~~~~rf~sfap~r~~~~~gn~v~~lvdG~--------------------~~ 374 (952)
+.++.....+..-|...+.... + .---..|.|.| .|+.|++|.|+. ..
T Consensus 143 ~~~~f~~~~~~~~~~~gv~~~~------~--~gvp~t~f~~r----~g~~vtlyqdahv~~~~~p~i~l~~g~~~~~~~c 210 (808)
T PLN02270 143 VKLQYFEVTKDRNWGRGIRSAK------F--PGVPYTFFSQR----QGCKVSLYQDAHIPDNFVPKIPLAGGKNYEPHRC 210 (808)
T ss_pred EEEEEEEcccCcchhcccCCcC------c--CCCCCcccccC----CCCeeEEeccccCCCCCCCccccCCCcccchhhh
Confidence 4556666666666877773321 1 11123678888 589999998863 36
Q ss_pred HHHHHHHHHhcccEEEEeeecCCceeEEEcCCC---CchhHHHHHHHHHHhhCCcEEEEEEccchhhhh--hcc------
Q 002219 375 FEAIASSIEDAKSEIFICGWWLCPELYLRRPFH---NHASSRLDALLEAKAKQGVQIYILLYKEVALAL--KIN------ 443 (952)
Q Consensus 375 f~al~~aI~~Ak~~I~I~~W~lsPe~Yl~rp~~---d~~~~rL~~~L~~aA~rGVkVrILl~d~~~~~l--~~~------ 443 (952)
++++.+||.+||++|||++|+++|+++|.|+.. .+...+|.++|++||++||+|+||+||+..+.. +.+
T Consensus 211 wedi~~AI~~Ar~~IyI~GW~~d~~i~LvRd~~~p~~~~~~~LGeLLk~KA~eGV~V~iLvWDd~ts~~~~k~~g~m~th 290 (808)
T PLN02270 211 WEDVFDAITNAKHLIYITGWSVYTEISLVRDSRRPKPGGDVTIGELLKKKASEGVRVLLLVWDDRTSVDLLKKDGLMATH 290 (808)
T ss_pred HHHHHHHHHhhhcEEEEEEeecCCCceEecCCCCCCCCCcchHHHHHHHHhcCCCEEEEEEEcCcccchhhccccccccC
Confidence 999999999999999999999999999998421 134579999999999999999999999765421 111
Q ss_pred hhhhHHHHhccCCCeEEEEc---CCC---c---CCCcccccCcceEEEEeCC-----------eEEEccccCCCCCcCCC
Q 002219 444 SVYSKRKLLSIHENVRVLRY---PDH---F---ASGVYLWSHHEKLVIVDYQ-----------ICFIGGLDLCFGRYDTF 503 (952)
Q Consensus 444 s~~~k~~L~~l~~gI~V~r~---P~~---~---~~~~~~~rhHrKivVIDg~-----------vAFvGGiNL~~gRwDt~ 503 (952)
...+.+.+ .+.+|++... |+. + ......++||||+||||+. +|||||+|||+|||||+
T Consensus 291 d~~t~~~f--~~~~V~~~L~~r~P~~~~~~~~~~~~~~~~SHHQKiVVID~~~~~~~~~~r~iVAFVGGIDLc~GRWDT~ 368 (808)
T PLN02270 291 DEETENFF--RGTDVHCILCPRNPDDGGSIVQDLQISTMFTHHQKIVVVDSEMPNGGSQRRRIVSFVGGIDLCDGRYDTP 368 (808)
T ss_pred HHHHHHHh--ccCCceEEEcCCCcccccceeeccccccccccceeEEEEccCCccccccccceEEEEcceeccCCcccCc
Confidence 11221222 2456765543 431 0 1124579999999999998 99999999999999999
Q ss_pred CCCCCCCCCCcCCCCCCCCCCCCCCCCccccccccccCCCCCCCCeEEEEEEEEChHHHHHHHHHHHHHHhhhcCCCCCC
Q 002219 504 EHKIGDNPPLIWPGKDYYNPRESEPNSWEDTMRDELDRGKYPRMPWHDIHCALWGPPCRDVARHFVQRWNYAKRNKAPNE 583 (952)
Q Consensus 504 ~H~l~D~~~~~~~G~dY~n~~~~d~~~~~~~~~d~~dr~~~pr~pWhDv~~~v~Gpaa~dl~~~F~qrWn~~~~~k~~~~ 583 (952)
+|++++..... +++||.++...+ ..++.+.||+||||+|++|+||+|++|+++|.+||+.++++..
T Consensus 369 ~H~lf~~Ldt~-h~~Df~~p~~~~----------~~~~~g~Pr~PWhDvh~rVeGPaa~dL~~~F~~rW~~atg~~l--- 434 (808)
T PLN02270 369 FHSLFRTLDTA-HHDDFHQPNFTG----------ASITKGGPREPWHDIHSRLEGPIAWDVLFNFEQRWSKQGGKDI--- 434 (808)
T ss_pred ccccccccccc-ccccccCccccc----------ccccCCCCCCCeEEEEEEEECHHHHHHHHHHHHHHHhhcCccc---
Confidence 99998765443 467887764321 1123467899999999999999999999999999999875432
Q ss_pred CCccccCCccccccccccCCcchhhhcccccccccccccccccccccCccCCCCCCCCCCCccccCCCCCCcCCCCCccc
Q 002219 584 ETIPLLMPQHQMVIPHYMGRSREVEVESKNVEDNSKSIKRQDSFTFRSSLQDIPLLLPQEPEVLDDSSRGLIPNGLDYTT 663 (952)
Q Consensus 584 ~~~p~l~P~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~p~l~p~~~~~~~~~~~~~~~~~~~~~~ 663 (952)
+++. .+ +..+ ++|++..
T Consensus 435 -----l~~~-----------------------------~~---------~~~~--~~P~~~~------------------ 451 (808)
T PLN02270 435 -----LVQL-----------------------------RE---------LEDV--IIPPSPV------------------ 451 (808)
T ss_pred -----hhhh-----------------------------cc---------cccc--cCCCCcc------------------
Confidence 1110 00 0000 1121100
Q ss_pred ccccccccccccccccccCCCCCCccCCCCCCCcccccccccccCCCCCCCCchhhhhcccCCccCCCCccCCCCCCCCc
Q 002219 664 TKSASFRYQKAKIEPVVTDMPMKGFVDDRDSPHHHLKTSLDVMTLPGTKSSDIEWWETQERGDQVGSTDETGQVGPRASC 743 (952)
Q Consensus 664 ~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 743 (952)
.| +...+++
T Consensus 452 ------------------------------------------------------~~-----------------p~d~~~w 460 (808)
T PLN02270 452 ------------------------------------------------------MF-----------------PDDHEVW 460 (808)
T ss_pred ------------------------------------------------------cC-----------------CCcCCcc
Confidence 00 0112456
Q ss_pred eEEEeecCCcccC-CC-----------------cccHHHHHHHHHHHHHhccCeEEEEeeeeccCCCCC---------hh
Q 002219 744 RCQIIRSVSQWSA-GT-----------------SQLEESIHCAYCSLIEKAEHFIYIENQFFISGLSGD---------EI 796 (952)
Q Consensus 744 ~vQilRS~~~wS~-G~-----------------~~~E~sI~~ayl~~I~~A~~~IYIEnqyFis~~~~~---------~~ 796 (952)
.||++||++.+++ |. ...|.||+.||++||++|+||||||||||++++... -.
T Consensus 461 ~VQvfRSid~g~a~~~P~~~~~~~~~~lv~g~~~~~~rsI~~aYi~AI~~A~~~IYIENQYF~sss~~w~~~~~~~~~~~ 540 (808)
T PLN02270 461 NVQLFRSIDGGAAFGFPETPEAAAEAGLVSGKDNIIDRSIQDAYIHAIRRAKDFIYIENQYFLGSSFAWSADGIKPEDIN 540 (808)
T ss_pred ccceeecccchhhccCCCCcchhhhcceeccCCCchhhHHHHHHHHHHHhhhhEEEeehhhhhhhhhhhccccccccccc
Confidence 7899999875443 21 124789999999999999999999999999985321 13
Q ss_pred HHHHHHHHHHHHHHHHHHcCCceEEEEEecCCCCCCCCCCCCCchhHHHHHHHHHHHHHhhHHHHHHHHHHhcCC--Ccc
Q 002219 797 IRNRVLESLYRRILRAYNEKKCFRVIIVIPLLPGFQGGVDDGGAASVRAIMHWQYRTICRGQNSILHNLYALLGP--KTH 874 (952)
Q Consensus 797 v~n~I~~AL~~RI~~A~~~g~~vrV~IvlPl~pgf~g~~~d~~~~~~r~i~~~qy~ti~rg~~si~~~L~~~~Gv--~~~ 874 (952)
..|.|..+|+.||.++.+++++|+|+||+|+.|+ ++. ++.++|+||+|||+||+++..+++++|++ .|+ ++.
T Consensus 541 ~~nlIp~el~~kI~~ri~~~e~f~VyIViP~~pe---G~~--e~~~vq~il~wq~~TM~~~~~~I~~~Lk~-~g~~~dp~ 614 (808)
T PLN02270 541 ALHLIPKELSLKIVSKIEAGEKFTVYVVVPMWPE---GIP--ESGSVQAILDWQRRTMEMMYKDVIQALRA-KGLEEDPR 614 (808)
T ss_pred ccccchHHHHHHHHHHHhCCCCCEEEEEECCCCC---CCc--ccchHHHHHHHHHHHHHHHHHHHHHHHHH-cCccCCcc
Confidence 5689999999999999999999999999999997 333 35689999999999999999999999998 665 789
Q ss_pred cccccccccccccccCCC--Cc---------------ccccceeeeeEEEEeCcEEEEecccCCcCccCCCCCcceEEEE
Q 002219 875 DYISFYGLRAYGRLFEDG--PV---------------ATSQVYVHSKVMIIDDSIALIGSANINDRSLLGSRDSEVSVGL 937 (952)
Q Consensus 875 ~Yi~f~~lr~~~~~~~~g--~~---------------~te~iyvHSKlmIVDD~~~iIGSANin~RSm~G~rDsEi~v~i 937 (952)
+|++||+|++++....|. |. ..++||||||+|||||++++|||||||+|||.|.|||||++..
T Consensus 615 dyL~ff~L~nre~~~~g~~~P~~~~~~~~~~~~aq~~rr~~I~vH~K~~ivDd~~~~iGSaN~n~rS~~G~rDSEIam~a 694 (808)
T PLN02270 615 NYLTFFCLGNREVKKSGEYEPSEKPEPDTDYIRAQEARRFMIYVHTKMMIVDDEYIIIGSANINQRSMDGARDSEIAMGG 694 (808)
T ss_pred ceEEEEeccccccccCcccCCccCCcccchhhhhhhccceeEEEeeeEEEEcCCEEEEeccccccccccCCccchhhhcc
Confidence 999999999887542210 11 1247999999999999999999999999999999999999988
Q ss_pred Echh
Q 002219 938 YLFI 941 (952)
Q Consensus 938 ~d~~ 941 (952)
+.|.
T Consensus 695 ~qp~ 698 (808)
T PLN02270 695 YQPY 698 (808)
T ss_pred cCcc
Confidence 7764
No 6
>PRK12452 cardiolipin synthetase; Reviewed
Probab=100.00 E-value=1.1e-51 Score=483.16 Aligned_cols=331 Identities=23% Similarity=0.371 Sum_probs=257.8
Q ss_pred CCCeEEEEecHHHHHHHHHHHHHhcccEEEEeeecCCceeEEEcCCCCchhHHHHHHHHHHhhCCcEEEEEEccchhhhh
Q 002219 361 DGSQAQWFVDGKAAFEAIASSIEDAKSEIFICGWWLCPELYLRRPFHNHASSRLDALLEAKAKQGVQIYILLYKEVALAL 440 (952)
Q Consensus 361 ~gn~v~~lvdG~~~f~al~~aI~~Ak~~I~I~~W~lsPe~Yl~rp~~d~~~~rL~~~L~~aA~rGVkVrILl~d~~~~~l 440 (952)
.||.+++|.||+++|++++++|++||++|+| ++|++++ |..+.++.++|++||+|||+||||+ |+.|+.
T Consensus 138 ~~n~~~ll~~g~~~~~~l~~~I~~Ak~~I~i-------~~yi~~~--d~~g~~i~~aL~~aa~rGV~VRiL~-D~~Gs~- 206 (509)
T PRK12452 138 DRTTTKLLTNGDQTFSEILQAIEQAKHHIHI-------QYYIYKS--DEIGTKVRDALIKKAKDGVIVRFLY-DGLGSN- 206 (509)
T ss_pred CCCEEEEeCCHHHHHHHHHHHHHHhCCEEEE-------EEEEEeC--CcHHHHHHHHHHHHHHCCCEEEEEE-ECCCCC-
Confidence 6999999999999999999999999999999 8999984 7889999999999999999999985 777764
Q ss_pred hcchhhhHHHHhccCCCeEEEEc-CCCc--CCCcccccCcceEEEEeCCeEEEccccCCCCCcCCCCCCCCCCCCCcCCC
Q 002219 441 KINSVYSKRKLLSIHENVRVLRY-PDHF--ASGVYLWSHHEKLVIVDYQICFIGGLDLCFGRYDTFEHKIGDNPPLIWPG 517 (952)
Q Consensus 441 ~~~s~~~k~~L~~l~~gI~V~r~-P~~~--~~~~~~~rhHrKivVIDg~vAFvGGiNL~~gRwDt~~H~l~D~~~~~~~G 517 (952)
.+.+.+. +.|. .+||+|..| |..+ .....++|||||++||||++||+||+|+.
T Consensus 207 ~~~~~~~-~~L~--~aGi~v~~f~P~~~~~~~~~~n~RnHRKi~VIDg~ia~~GG~Ni~--------------------- 262 (509)
T PRK12452 207 TLRRRFL-QPMK--EAGIEIVEFDPIFSAWLLETVNYRNHRKIVIVDGEIGFTGGLNVG--------------------- 262 (509)
T ss_pred CCCHHHH-HHHH--hCCeEEEEecCcccccccccccCCCCCeEEEEcCCEEEeCCcccc---------------------
Confidence 2333333 3444 479999877 5432 22357899999999999999999999993
Q ss_pred CCCCCCCCCCCCCccccccccccCCCCCCCCeEEEEEEEEChHHHHHHHHHHHHHHhhhcCCCCCCCCccccCCcccccc
Q 002219 518 KDYYNPRESEPNSWEDTMRDELDRGKYPRMPWHDIHCALWGPPCRDVARHFVQRWNYAKRNKAPNEETIPLLMPQHQMVI 597 (952)
Q Consensus 518 ~dY~n~~~~d~~~~~~~~~d~~dr~~~pr~pWhDv~~~v~Gpaa~dl~~~F~qrWn~~~~~k~~~~~~~p~l~P~~~~~~ 597 (952)
++|.+. ..+..+|||+|++++||+|.+++.+|.++|++++.... |.++
T Consensus 263 d~y~~~-------------------~~~~~~WrD~~~~i~Gp~V~~l~~~F~~dW~~~~~~~~----------~~~~--- 310 (509)
T PRK12452 263 DEYLGR-------------------SKKFPVWRDSHLKVEGKALYKLQAIFLEDWLYASSGLN----------TYSW--- 310 (509)
T ss_pred hhhcCC-------------------CCCCCCceEEEEEEECHHHHHHHHHHHHHHHHhhCccc----------cccc---
Confidence 556542 12346899999999999999999999999998854211 0000
Q ss_pred ccccCCcchhhhcccccccccccccccccccccCccCCCCCCCCCCCccccCCCCCCcCCCCCccccccccccccccccc
Q 002219 598 PHYMGRSREVEVESKNVEDNSKSIKRQDSFTFRSSLQDIPLLLPQEPEVLDDSSRGLIPNGLDYTTTKSASFRYQKAKIE 677 (952)
Q Consensus 598 ~~y~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~p~l~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 677 (952)
. .....+ ..|+.
T Consensus 311 ------------------------------~---~~~~~~-~~~~~---------------------------------- 322 (509)
T PRK12452 311 ------------------------------D---PFMNRQ-YFPGK---------------------------------- 322 (509)
T ss_pred ------------------------------c---cccchh-cCCCc----------------------------------
Confidence 0 000000 00000
Q ss_pred ccccCCCCCCccCCCCCCCcccccccccccCCCCCCCCchhhhhcccCCccCCCCccCCCCCCCCceEEEeecCCcccCC
Q 002219 678 PVVTDMPMKGFVDDRDSPHHHLKTSLDVMTLPGTKSSDIEWWETQERGDQVGSTDETGQVGPRASCRCQIIRSVSQWSAG 757 (952)
Q Consensus 678 ~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vQilRS~~~wS~G 757 (952)
. ...+.+.+|++.|.+
T Consensus 323 ----------------------------------------------------------~-~~~~~~~~q~~~sgp----- 338 (509)
T PRK12452 323 ----------------------------------------------------------E-ISNAEGAVQIVASGP----- 338 (509)
T ss_pred ----------------------------------------------------------c-ccCCCeEEEEEeCCC-----
Confidence 0 001335789999854
Q ss_pred CcccHHHHHHHHHHHHHhccCeEEEEeeeeccCCCCChhHHHHHHHHHHHHHHHHHHcCCceEEEEEecCCCCCCCCCCC
Q 002219 758 TSQLEESIHCAYCSLIEKAEHFIYIENQFFISGLSGDEIIRNRVLESLYRRILRAYNEKKCFRVIIVIPLLPGFQGGVDD 837 (952)
Q Consensus 758 ~~~~E~sI~~ayl~~I~~A~~~IYIEnqyFis~~~~~~~v~n~I~~AL~~RI~~A~~~g~~vrV~IvlPl~pgf~g~~~d 837 (952)
...+.+|.++|+++|.+|+++|||+||||+|+. .+.+||. .|+++| |+|.|++|..|+
T Consensus 339 -~~~~~~i~~~~l~~I~~A~~~I~I~tpYf~pd~--------~l~~aL~----~Aa~rG--V~Vrii~p~~~D------- 396 (509)
T PRK12452 339 -SSDDKSIRNTLLAVMGSAKKSIWIATPYFIPDQ--------ETLTLLR----LSAISG--IDVRILYPGKSD------- 396 (509)
T ss_pred -CchhHHHHHHHHHHHHHhhhEEEEECCccCCCH--------HHHHHHH----HHHHcC--CEEEEEcCCCCC-------
Confidence 345779999999999999999999999999973 6888886 899999 666667896654
Q ss_pred CCchhHHHHHHHHHHHHHhhHHHHHHHHHHhcCCCcccccccccccccccccCCCCcccccceeeeeEEEEeCcEEEEec
Q 002219 838 GGAASVRAIMHWQYRTICRGQNSILHNLYALLGPKTHDYISFYGLRAYGRLFEDGPVATSQVYVHSKVMIIDDSIALIGS 917 (952)
Q Consensus 838 ~~~~~~r~i~~~qy~ti~rg~~si~~~L~~~~Gv~~~~Yi~f~~lr~~~~~~~~g~~~te~iyvHSKlmIVDD~~~iIGS 917 (952)
..+++|. ..++++.|.+ +|++++.| .+.++|+|+|||||++++|||
T Consensus 397 ------~~~~~~a-------~~~~~~~L~~-aGv~I~~y--------------------~~~~lHaK~~ivD~~~a~vGS 442 (509)
T PRK12452 397 ------SIISDQA-------SQSYFTPLLK-AGASIYSY--------------------KDGFMHAKIVLVDDKIATIGT 442 (509)
T ss_pred ------hHHHHHH-------HHHHHHHHHH-cCCEEEEe--------------------cCCCeeeeEEEECCCEEEEeC
Confidence 1233443 5678899998 89988765 135899999999999999999
Q ss_pred ccCCcCccCCCCCcceEEEEEchhhHHHhhh
Q 002219 918 ANINDRSLLGSRDSEVSVGLYLFILRWELTD 948 (952)
Q Consensus 918 ANin~RSm~G~rDsEi~v~i~d~~~~~~~~~ 948 (952)
+|||.||+ ..|.|++++++|++++.+|.+
T Consensus 443 ~Nld~RS~--~~n~E~~~~i~~~~~~~~l~~ 471 (509)
T PRK12452 443 ANMDVRSF--ELNYEIISVLYESETVHDIKR 471 (509)
T ss_pred cccCHhHh--hhhhhccEEEECHHHHHHHHH
Confidence 99999999 899999999999999999875
No 7
>PRK01642 cls cardiolipin synthetase; Reviewed
Probab=100.00 E-value=9.5e-51 Score=473.70 Aligned_cols=326 Identities=24% Similarity=0.400 Sum_probs=256.5
Q ss_pred CCCeEEEEecHHHHHHHHHHHHHhcccEEEEeeecCCceeEEEcCCCCchhHHHHHHHHHHhhCCcEEEEEEccchhhhh
Q 002219 361 DGSQAQWFVDGKAAFEAIASSIEDAKSEIFICGWWLCPELYLRRPFHNHASSRLDALLEAKAKQGVQIYILLYKEVALAL 440 (952)
Q Consensus 361 ~gn~v~~lvdG~~~f~al~~aI~~Ak~~I~I~~W~lsPe~Yl~rp~~d~~~~rL~~~L~~aA~rGVkVrILl~d~~~~~l 440 (952)
.||.+++|.||+++|++|+++|++||++|+| ++|+++ .|..+.++.++|.+||+|||+|||| +|..|+..
T Consensus 114 ~~n~v~ll~~g~~~~~~l~~~I~~Ak~~I~l-------~~yi~~--~d~~g~~i~~aL~~aa~rGV~VriL-~D~~Gs~~ 183 (483)
T PRK01642 114 KGNQLRLLTNGDETFQAIIRDIELARHYILM-------EFYIWR--PDGLGDQVAEALIAAAKRGVRVRLL-YDSIGSFA 183 (483)
T ss_pred CCCEEEEEcCHHHHHHHHHHHHHHhhcEEEE-------EEEEEc--cCCcHHHHHHHHHHHHHCCCEEEEE-EECCCCCC
Confidence 6999999999999999999999999999999 899998 4778999999999999999999998 47776532
Q ss_pred hcchhhhHHHHhccCCCeEEEEc-CCC-c--CCCcccccCcceEEEEeCCeEEEccccCCCCCcCCCCCCCCCCCCCcCC
Q 002219 441 KINSVYSKRKLLSIHENVRVLRY-PDH-F--ASGVYLWSHHEKLVIVDYQICFIGGLDLCFGRYDTFEHKIGDNPPLIWP 516 (952)
Q Consensus 441 ~~~s~~~k~~L~~l~~gI~V~r~-P~~-~--~~~~~~~rhHrKivVIDg~vAFvGGiNL~~gRwDt~~H~l~D~~~~~~~ 516 (952)
..++.+. +.|.+ +||+|..+ |.. + .....++|+|+|++||||++||+||+|++
T Consensus 184 ~~~~~~~-~~L~~--~Gi~v~~~~p~~~~~~~~~~~n~RnHrKi~VIDg~ia~~Gg~Ni~-------------------- 240 (483)
T PRK01642 184 FFRSPYP-EELRN--AGVEVVEFLKVNLGRVFRRRLDLRNHRKIVVIDGYIAYTGSMNVV-------------------- 240 (483)
T ss_pred CCcHHHH-HHHHH--CCCEEEEecCCCcccccccccccccCceEEEEcCCEEEeCCcccC--------------------
Confidence 1122232 34543 79999887 643 1 23356889999999999999999999995
Q ss_pred CC-CCCCCCCCCCCCccccccccccCCCCCCCCeEEEEEEEEChHHHHHHHHHHHHHHhhhcCCCCCCCCccccCCcccc
Q 002219 517 GK-DYYNPRESEPNSWEDTMRDELDRGKYPRMPWHDIHCALWGPPCRDVARHFVQRWNYAKRNKAPNEETIPLLMPQHQM 595 (952)
Q Consensus 517 G~-dY~n~~~~d~~~~~~~~~d~~dr~~~pr~pWhDv~~~v~Gpaa~dl~~~F~qrWn~~~~~k~~~~~~~p~l~P~~~~ 595 (952)
+ +|.+. ....++|||+|++++||+|.+++..|.++|++++++... +
T Consensus 241 -d~~y~~~-------------------~~~~~~w~D~~~~i~Gp~v~~l~~~F~~dW~~~~~~~~~---------~---- 287 (483)
T PRK01642 241 -DPEYFKQ-------------------DPGVGQWRDTHVRIEGPVVTALQLIFAEDWEWETGERIL---------P---- 287 (483)
T ss_pred -CHHHhCC-------------------CCCCCCcEEEEEEEEcHHHHHHHHHHHHHHHHHhCcccC---------C----
Confidence 3 45441 123468999999999999999999999999987643110 0
Q ss_pred ccccccCCcchhhhcccccccccccccccccccccCccCCCCC-CCCCCCccccCCCCCCcCCCCCcccccccccccccc
Q 002219 596 VIPHYMGRSREVEVESKNVEDNSKSIKRQDSFTFRSSLQDIPL-LLPQEPEVLDDSSRGLIPNGLDYTTTKSASFRYQKA 674 (952)
Q Consensus 596 ~~~~y~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~p~-l~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 674 (952)
..|. ..++.
T Consensus 288 ---------------------------------------~~~~~~~~~~------------------------------- 297 (483)
T PRK01642 288 ---------------------------------------PPPDVLIMPF------------------------------- 297 (483)
T ss_pred ---------------------------------------CCcccccCCc-------------------------------
Confidence 0000 00000
Q ss_pred cccccccCCCCCCccCCCCCCCcccccccccccCCCCCCCCchhhhhcccCCccCCCCccCCCCCCCCceEEEeecCCcc
Q 002219 675 KIEPVVTDMPMKGFVDDRDSPHHHLKTSLDVMTLPGTKSSDIEWWETQERGDQVGSTDETGQVGPRASCRCQIIRSVSQW 754 (952)
Q Consensus 675 ~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vQilRS~~~w 754 (952)
...+.+.||++.|.
T Consensus 298 ---------------------------------------------------------------~~~~~~~~qi~~sg--- 311 (483)
T PRK01642 298 ---------------------------------------------------------------EEASGHTVQVIASG--- 311 (483)
T ss_pred ---------------------------------------------------------------cCCCCceEEEEeCC---
Confidence 01123578999884
Q ss_pred cCCCcccHHHHHHHHHHHHHhccCeEEEEeeeeccCCCCChhHHHHHHHHHHHHHHHHHHcCCceEEEEEecCCCCCCCC
Q 002219 755 SAGTSQLEESIHCAYCSLIEKAEHFIYIENQFFISGLSGDEIIRNRVLESLYRRILRAYNEKKCFRVIIVIPLLPGFQGG 834 (952)
Q Consensus 755 S~G~~~~E~sI~~ayl~~I~~A~~~IYIEnqyFis~~~~~~~v~n~I~~AL~~RI~~A~~~g~~vrV~IvlPl~pgf~g~ 834 (952)
+...+..++++|+++|.+|+++|||++|||+|+. .|.+||. .|+++| |+|.|++|..++
T Consensus 312 ---P~~~~~~~~~~~~~~I~~A~~~I~I~tpYfip~~--------~i~~aL~----~Aa~rG--V~Vril~p~~~d---- 370 (483)
T PRK01642 312 ---PGDPEETIHQFLLTAIYSARERLWITTPYFVPDE--------DLLAALK----TAALRG--VDVRIIIPSKND---- 370 (483)
T ss_pred ---CCChhhHHHHHHHHHHHHhccEEEEEcCCcCCCH--------HHHHHHH----HHHHcC--CEEEEEeCCCCC----
Confidence 4456779999999999999999999999999873 6888886 899999 666677897654
Q ss_pred CCCCCchhHHHHHHHHHHHHHhhHHHHHHHHHHhcCCCcccccccccccccccccCCCCcccccceeeeeEEEEeCcEEE
Q 002219 835 VDDGGAASVRAIMHWQYRTICRGQNSILHNLYALLGPKTHDYISFYGLRAYGRLFEDGPVATSQVYVHSKVMIIDDSIAL 914 (952)
Q Consensus 835 ~~d~~~~~~r~i~~~qy~ti~rg~~si~~~L~~~~Gv~~~~Yi~f~~lr~~~~~~~~g~~~te~iyvHSKlmIVDD~~~i 914 (952)
..++.|. ..+++..|.+ +|+++++| ...++|||+|||||++++
T Consensus 371 ---------~~~~~~~-------~~~~~~~L~~-~Gv~I~~y--------------------~~~~~HaK~~ivD~~~~~ 413 (483)
T PRK01642 371 ---------SLLVFWA-------SRAFFTELLE-AGVKIYRY--------------------EGGLLHTKSVLVDDELAL 413 (483)
T ss_pred ---------cHHHHHH-------HHHHHHHHHH-cCCEEEEe--------------------CCCceEeEEEEECCCEEE
Confidence 1234443 5577889988 89988765 134899999999999999
Q ss_pred EecccCCcCccCCCCCcceEEEEEchhhHHHhhh
Q 002219 915 IGSANINDRSLLGSRDSEVSVGLYLFILRWELTD 948 (952)
Q Consensus 915 IGSANin~RSm~G~rDsEi~v~i~d~~~~~~~~~ 948 (952)
|||+|+|.||+ ..|.|++++|+|++++.+|.+
T Consensus 414 vGS~N~d~rS~--~~N~E~~~~i~d~~~~~~l~~ 445 (483)
T PRK01642 414 VGTVNLDMRSF--WLNFEITLVIDDTGFAADLAA 445 (483)
T ss_pred eeCCcCCHhHH--hhhhcceEEEECHHHHHHHHH
Confidence 99999999999 899999999999999999875
No 8
>PRK11263 cardiolipin synthase 2; Provisional
Probab=100.00 E-value=2.8e-48 Score=443.44 Aligned_cols=326 Identities=21% Similarity=0.328 Sum_probs=248.3
Q ss_pred CCCCCeEEEEecHHHHHHHHHHHHHhcccEEEEeeecCCceeEEEcCCCCchhHHHHHHHHHHhhCCcEEEEEEccchhh
Q 002219 359 TDDGSQAQWFVDGKAAFEAIASSIEDAKSEIFICGWWLCPELYLRRPFHNHASSRLDALLEAKAKQGVQIYILLYKEVAL 438 (952)
Q Consensus 359 ~~~gn~v~~lvdG~~~f~al~~aI~~Ak~~I~I~~W~lsPe~Yl~rp~~d~~~~rL~~~L~~aA~rGVkVrILl~d~~~~ 438 (952)
++.||.+++|.||+++|++++++|++||++|+| ++|++.+ |..+..|.++|.+||+|||+||||+ |..|+
T Consensus 4 ~~~gN~v~ll~~G~e~~~~l~~~I~~Ak~~I~i-------~~yi~~~--d~~g~~l~~aL~~aa~rGV~Vril~-D~~gs 73 (411)
T PRK11263 4 WREGNRIQLLENGEQYYPRVFEAIAAAQEEILL-------ETFILFE--DKVGKQLHAALLAAAQRGVKVEVLV-DGYGS 73 (411)
T ss_pred ccCCCeEEEEeCHHHHHHHHHHHHHHhCCEEEE-------EEEEEec--CchHHHHHHHHHHHHHCCCEEEEEE-ECCCC
Confidence 457999999999999999999999999999999 7888874 6789999999999999999999986 66654
Q ss_pred hhhcchhhhHHHHhccCCCeEEEEc-CCC-cCC--CcccccCcceEEEEeCCeEEEccccCCCCCcCCCCCCCCCCCCCc
Q 002219 439 ALKINSVYSKRKLLSIHENVRVLRY-PDH-FAS--GVYLWSHHEKLVIVDYQICFIGGLDLCFGRYDTFEHKIGDNPPLI 514 (952)
Q Consensus 439 ~l~~~s~~~k~~L~~l~~gI~V~r~-P~~-~~~--~~~~~rhHrKivVIDg~vAFvGGiNL~~gRwDt~~H~l~D~~~~~ 514 (952)
. .+...+. ..|. .+||+|..| |.. +.. ..++.|+|+|++|||+++|||||+|++
T Consensus 74 ~-~~~~~~~-~~L~--~aGv~v~~~~p~~~~~~~~~~~~~R~HrKiiVIDg~~a~vGg~N~~------------------ 131 (411)
T PRK11263 74 P-DLSDEFV-NELT--AAGVRFRYFDPRPRLLGMRTNLFRRMHRKIVVIDGRIAFVGGINYS------------------ 131 (411)
T ss_pred C-CCCHHHH-HHHH--HCCeEEEEeCCcccccccccccccCCcceEEEEcCCEEEEcCeEch------------------
Confidence 3 2233332 3443 379999877 542 111 123459999999999999999999995
Q ss_pred CCCCCCCCCCCCCCCCccccccccccCCCCCCCCeEEEEEEEEChHHHHHHHHHHHHHHhhhcCCCCCCCCccccCCccc
Q 002219 515 WPGKDYYNPRESEPNSWEDTMRDELDRGKYPRMPWHDIHCALWGPPCRDVARHFVQRWNYAKRNKAPNEETIPLLMPQHQ 594 (952)
Q Consensus 515 ~~G~dY~n~~~~d~~~~~~~~~d~~dr~~~pr~pWhDv~~~v~Gpaa~dl~~~F~qrWn~~~~~k~~~~~~~p~l~P~~~ 594 (952)
++|.+. .+..+|+|++++|+||+|.+++..|.+.|....... .+
T Consensus 132 ---~~~~~~--------------------~g~~~w~D~~v~i~Gp~V~~l~~~f~~~w~~~~~~~-------~~------ 175 (411)
T PRK11263 132 ---ADHLSD--------------------YGPEAKQDYAVEVEGPVVADIHQFELEALPGQSAAR-------RW------ 175 (411)
T ss_pred ---Hhhccc--------------------cCCCCceEEEEEEECHHHHHHHHHHHHHHhhcccch-------hh------
Confidence 334331 122469999999999999999999999996431000 00
Q ss_pred cccccccCCcchhhhcccccccccccccccccccccCccCCCCCCCCCCCccccCCCCCCcCCCCCcccccccccccccc
Q 002219 595 MVIPHYMGRSREVEVESKNVEDNSKSIKRQDSFTFRSSLQDIPLLLPQEPEVLDDSSRGLIPNGLDYTTTKSASFRYQKA 674 (952)
Q Consensus 595 ~~~~~y~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~p~l~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 674 (952)
+. ..+ ..|.
T Consensus 176 --------------------------------~~------~~~-~~~~-------------------------------- 184 (411)
T PRK11263 176 --------------------------------WR------RHH-RAEE-------------------------------- 184 (411)
T ss_pred --------------------------------hc------ccc-cCcc--------------------------------
Confidence 00 000 0000
Q ss_pred cccccccCCCCCCccCCCCCCCcccccccccccCCCCCCCCchhhhhcccCCccCCCCccCCCCCCCCceEEEeecCCcc
Q 002219 675 KIEPVVTDMPMKGFVDDRDSPHHHLKTSLDVMTLPGTKSSDIEWWETQERGDQVGSTDETGQVGPRASCRCQIIRSVSQW 754 (952)
Q Consensus 675 ~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vQilRS~~~w 754 (952)
....|...+|++-+.+
T Consensus 185 --------------------------------------------------------------~~~~g~~~~~~v~~~p-- 200 (411)
T PRK11263 185 --------------------------------------------------------------NRQPGEAQALLVWRDN-- 200 (411)
T ss_pred --------------------------------------------------------------cCCCCCeEEEEEECCC--
Confidence 0012344678886642
Q ss_pred cCCCcccHHHHHHHHHHHHHhccCeEEEEeeeeccCCCCChhHHHHHHHHHHHHHHHHHHcCCceEEEEEecCCCCCCCC
Q 002219 755 SAGTSQLEESIHCAYCSLIEKAEHFIYIENQFFISGLSGDEIIRNRVLESLYRRILRAYNEKKCFRVIIVIPLLPGFQGG 834 (952)
Q Consensus 755 S~G~~~~E~sI~~ayl~~I~~A~~~IYIEnqyFis~~~~~~~v~n~I~~AL~~RI~~A~~~g~~vrV~IvlPl~pgf~g~ 834 (952)
......|..+|+.+|.+|++.|||+||||+|+. .|.+||. .|+++| |+|.||+|..|+
T Consensus 201 ----~~~~~~i~~~~~~~i~~A~~~I~I~tpYf~p~~--------~l~~aL~----~Aa~RG--V~V~ii~~~~~d---- 258 (411)
T PRK11263 201 ----EEHRDDIERHYLKALRQARREVIIANAYFFPGY--------RLLRALR----NAARRG--VRVRLILQGEPD---- 258 (411)
T ss_pred ----cchHHHHHHHHHHHHHHhceEEEEEecCcCCCH--------HHHHHHH----HHHHCC--CEEEEEeCCCCC----
Confidence 345679999999999999999999999999974 6888886 999999 666666886553
Q ss_pred CCCCCchhHHHHHHHHHHHHHhhHHHHHHHHHHhcCCCcccccccccccccccccCCCCcccccceeeeeEEEEeCcEEE
Q 002219 835 VDDGGAASVRAIMHWQYRTICRGQNSILHNLYALLGPKTHDYISFYGLRAYGRLFEDGPVATSQVYVHSKVMIIDDSIAL 914 (952)
Q Consensus 835 ~~d~~~~~~r~i~~~qy~ti~rg~~si~~~L~~~~Gv~~~~Yi~f~~lr~~~~~~~~g~~~te~iyvHSKlmIVDD~~~i 914 (952)
..++.|. ...+|..|.+ .|+++++|- ..++|+|+|||||++++
T Consensus 259 ---------~~~~~~a-------~~~~~~~Ll~-~Gv~I~~y~--------------------~~~lHaK~~viD~~~~~ 301 (411)
T PRK11263 259 ---------MPIVRVG-------ARLLYNYLLK-GGVQIYEYC--------------------RRPLHGKVALMDDHWAT 301 (411)
T ss_pred ---------cHHHHHH-------HHHHHHHHHH-CCCEEEEec--------------------CCCceeEEEEECCCEEE
Confidence 1233333 5567899998 899987651 24799999999999999
Q ss_pred EecccCCcCccCCCCCcceEEEEEchhhHHHhhh
Q 002219 915 IGSANINDRSLLGSRDSEVSVGLYLFILRWELTD 948 (952)
Q Consensus 915 IGSANin~RSm~G~rDsEi~v~i~d~~~~~~~~~ 948 (952)
|||+|+|.||| ..|.|++++|+|++++.+|.+
T Consensus 302 vGS~Nld~rS~--~lN~E~~~~i~d~~~a~~l~~ 333 (411)
T PRK11263 302 VGSSNLDPLSL--SLNLEANLIIRDRAFNQTLRD 333 (411)
T ss_pred EeCCcCCHHHh--hhhhhcCEEEeCHHHHHHHHH
Confidence 99999999999 999999999999999999975
No 9
>COG1502 Cls Phosphatidylserine/phosphatidylglycerophosphate/cardiolipin synthases and related enzymes [Lipid metabolism]
Probab=100.00 E-value=2.7e-39 Score=371.72 Aligned_cols=336 Identities=27% Similarity=0.414 Sum_probs=248.8
Q ss_pred CCCeEEEEecHHHHHHHHHHHHHhcccEEEEeeecCCceeEEEcCCCCchhHHHHHHHHHHhhCCcEEEEEEccchhhhh
Q 002219 361 DGSQAQWFVDGKAAFEAIASSIEDAKSEIFICGWWLCPELYLRRPFHNHASSRLDALLEAKAKQGVQIYILLYKEVALAL 440 (952)
Q Consensus 361 ~gn~v~~lvdG~~~f~al~~aI~~Ak~~I~I~~W~lsPe~Yl~rp~~d~~~~rL~~~L~~aA~rGVkVrILl~d~~~~~l 440 (952)
.++.++++.+|.++|.+++++|++|+++|++ ++|++.+ +..+.++.++|.+||++||+||+++ |..+...
T Consensus 58 ~~~~~~~l~~~~~~~~~~~~~i~~a~~~I~~-------~~~i~~~--d~~~~~i~~~l~~~a~~gv~vr~l~-D~~~~~~ 127 (438)
T COG1502 58 SGNGVDLLKDGADAFAALIELIEAAKKSIYL-------QYYIWQD--DELGREILDALIEAAKRGVEVRLLL-DDIGSTR 127 (438)
T ss_pred CCCceEEecCHHHHHHHHHHHHHHHhhEEEE-------EEEEEeC--ChhHHHHHHHHHHHHHcCCEEEEEE-ecCCCcc
Confidence 5799999999999999999999999999999 7899984 7789999999999999999999986 6666532
Q ss_pred hcchhhhHHHHhccCCCe-EEEEc-CCCc---CCCcccccCcceEEEEeCCeEEEccccCCCCCcCCCCCCCCCCCCCcC
Q 002219 441 KINSVYSKRKLLSIHENV-RVLRY-PDHF---ASGVYLWSHHEKLVIVDYQICFIGGLDLCFGRYDTFEHKIGDNPPLIW 515 (952)
Q Consensus 441 ~~~s~~~k~~L~~l~~gI-~V~r~-P~~~---~~~~~~~rhHrKivVIDg~vAFvGGiNL~~gRwDt~~H~l~D~~~~~~ 515 (952)
.....+. ..+ .++++ .+..+ |... .....+.++|+|++|||+.++|+||.|+
T Consensus 128 ~~~~~~~-~~~--~~~~i~~~~~~~~~~~~~~~~~~~~~r~H~K~~viD~~i~~vGg~N~-------------------- 184 (438)
T COG1502 128 GLLKSLL-ALL--KRAGIEEVRLFNPASPRPLRFRRLNRRLHRKIVVIDGKVAFVGGANI-------------------- 184 (438)
T ss_pred cccHHHH-HHH--hcCCceEEEecCCcccccchhhhhhccccceEEEEcCCEEEecCccc--------------------
Confidence 2222221 122 24777 55444 4321 2234678999999999999999999999
Q ss_pred CCCCCCCCCCCCCCCccccccccccCCCCCCCCeEEEEEEEEChHHHHHHHHHHHHHHhhhcCCCCCCCCccccCCcccc
Q 002219 516 PGKDYYNPRESEPNSWEDTMRDELDRGKYPRMPWHDIHCALWGPPCRDVARHFVQRWNYAKRNKAPNEETIPLLMPQHQM 595 (952)
Q Consensus 516 ~G~dY~n~~~~d~~~~~~~~~d~~dr~~~pr~pWhDv~~~v~Gpaa~dl~~~F~qrWn~~~~~k~~~~~~~p~l~P~~~~ 595 (952)
|++|.... ...++|+|+++++.||+|.+++.+|.++|+.......+... +
T Consensus 185 -~d~y~~~~-------------------~~~~~~~D~~~~~~g~~v~~l~~~f~~~w~~~~~~~~~~~~------~---- 234 (438)
T COG1502 185 -GDEYFHKD-------------------KGLGYWRDLHVRITGPAVADLARLFIQDWNLESGSSKPLLA------L---- 234 (438)
T ss_pred -chhhhccC-------------------cCcccceeeeEEEECHHHHHHHHHHHHHhhhccCcCccccc------c----
Confidence 45665521 02348999999999999999999999999987532211000 0
Q ss_pred ccccccCCcchhhhcccccccccccccccccccccCccCCCCCCCCCCCccccCCCCCCcCCCCCccccccccccccccc
Q 002219 596 VIPHYMGRSREVEVESKNVEDNSKSIKRQDSFTFRSSLQDIPLLLPQEPEVLDDSSRGLIPNGLDYTTTKSASFRYQKAK 675 (952)
Q Consensus 596 ~~~~y~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~p~l~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 675 (952)
.+...+..
T Consensus 235 ----------------------------------------~~~~~~~~-------------------------------- 242 (438)
T COG1502 235 ----------------------------------------VRPPLQSL-------------------------------- 242 (438)
T ss_pred ----------------------------------------cccccccc--------------------------------
Confidence 00000000
Q ss_pred ccccccCCCCCCccCCCCCCCcccccccccccCCCCCCCCchhhhhcccCCccCCCCccCCCCCCCCceEEEeecCCccc
Q 002219 676 IEPVVTDMPMKGFVDDRDSPHHHLKTSLDVMTLPGTKSSDIEWWETQERGDQVGSTDETGQVGPRASCRCQIIRSVSQWS 755 (952)
Q Consensus 676 ~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vQilRS~~~wS 755 (952)
........+.+|++.+.|.+.
T Consensus 243 -----------------------------------------------------------~~~~~~~~~~~~~~~~~P~~~ 263 (438)
T COG1502 243 -----------------------------------------------------------SLLPVGRGSTVQVLSSGPDKG 263 (438)
T ss_pred -----------------------------------------------------------cccccccCcceEEEecCCccc
Confidence 000001122379999988764
Q ss_pred CCCcccHHHHHHHHHHHHHhccCeEEEEeeeeccCCCCChhHHHHHHHHHHHHHHHHHHcCCceEEEEEecCC--CCCCC
Q 002219 756 AGTSQLEESIHCAYCSLIEKAEHFIYIENQFFISGLSGDEIIRNRVLESLYRRILRAYNEKKCFRVIIVIPLL--PGFQG 833 (952)
Q Consensus 756 ~G~~~~E~sI~~ayl~~I~~A~~~IYIEnqyFis~~~~~~~v~n~I~~AL~~RI~~A~~~g~~vrV~IvlPl~--pgf~g 833 (952)
.+.. +..+...|+.+|..|+++|+|++|||+|+. .+.+||. .|+++| |+|.|++|.. ++
T Consensus 264 ~~~~--~~~~~~~~~~~i~~A~~~i~i~~pYf~~~~--------~~~~al~----~a~~~G--v~V~ii~~~~~~~d--- 324 (438)
T COG1502 264 LGSE--LIELNRLLLKAINSARESILIATPYFVPDR--------ELLAALK----AAARRG--VDVRIIIPSLGAND--- 324 (438)
T ss_pred cchh--hhhHHHHHHHHHHhhceEEEEEcCCcCCCH--------HHHHHHH----HHHhcC--CEEEEEeCCCCCCC---
Confidence 4432 222569999999999999999999999984 6777876 888899 6677778832 22
Q ss_pred CCCCCCchhHHHHHHHHHHHHHhhHHHHHHHHHHhcCCCcccccccccccccccccCCCCcccccceeeeeEEEEeCcEE
Q 002219 834 GVDDGGAASVRAIMHWQYRTICRGQNSILHNLYALLGPKTHDYISFYGLRAYGRLFEDGPVATSQVYVHSKVMIIDDSIA 913 (952)
Q Consensus 834 ~~~d~~~~~~r~i~~~qy~ti~rg~~si~~~L~~~~Gv~~~~Yi~f~~lr~~~~~~~~g~~~te~iyvHSKlmIVDD~~~ 913 (952)
..+++|. ...++..|.+ .|+++++|- +| .++|+|+|||||+++
T Consensus 325 ----------~~~~~~~-------~~~~~~~l~~-~gv~i~~~~-------------~g------~~lH~K~~iiD~~~~ 367 (438)
T COG1502 325 ----------SAIVHAA-------YRAYLKELLE-AGVKVYEYP-------------GG------AFLHSKVMIIDDRTV 367 (438)
T ss_pred ----------hHHHHHH-------HHHHHHHHHH-hCCEEEEec-------------CC------CcceeeEEEEcCCEE
Confidence 2344444 4567888888 788876541 11 489999999999999
Q ss_pred EEecccCCcCccCCCCCcceEEEEEchhhHHHhhh
Q 002219 914 LIGSANINDRSLLGSRDSEVSVGLYLFILRWELTD 948 (952)
Q Consensus 914 iIGSANin~RSm~G~rDsEi~v~i~d~~~~~~~~~ 948 (952)
+|||+|+|.||+ .+|+|++++|+|++++.++.+
T Consensus 368 ~vGS~N~~~rS~--~lN~E~~~~i~d~~~~~~~~~ 400 (438)
T COG1502 368 LVGSANLDPRSL--RLNFEVGLVIEDPELALKLRR 400 (438)
T ss_pred EEeCCcCCHhHH--HHhhhheeEEeCHHHHHHHHH
Confidence 999999999999 899999999999999988765
No 10
>PRK09428 pssA phosphatidylserine synthase; Provisional
Probab=100.00 E-value=8.3e-36 Score=343.65 Aligned_cols=356 Identities=17% Similarity=0.156 Sum_probs=223.3
Q ss_pred CCCeEEEEecHHHHHHHHHHHHHhcccEEEEeeecCCceeEEEcCCCCchhHHHHHHHHHHhh--CCcEEEEEEccch--
Q 002219 361 DGSQAQWFVDGKAAFEAIASSIEDAKSEIFICGWWLCPELYLRRPFHNHASSRLDALLEAKAK--QGVQIYILLYKEV-- 436 (952)
Q Consensus 361 ~gn~v~~lvdG~~~f~al~~aI~~Ak~~I~I~~W~lsPe~Yl~rp~~d~~~~rL~~~L~~aA~--rGVkVrILl~d~~-- 436 (952)
.+|.+++|.+|.++|++|+++|++|+++|+| +.|++. .|..+..|.++|.+|++ +||+|+||+ |..
T Consensus 23 ~~~~v~~l~~~~~f~~~Ll~~I~~Ak~~I~l-------~~y~~~--~D~~g~~il~AL~~a~~~~~gv~VrvLv-D~~Ra 92 (451)
T PRK09428 23 SPDDVETLYSPADFRETLLEKIASAKKRIYI-------VALYLE--DDEAGREILDALYQAKQQNPELDIKVLV-DWHRA 92 (451)
T ss_pred CcccEEEEcCHHHHHHHHHHHHHhcCCeEEE-------EEEEec--CCchHHHHHHHHHHHHhcCCCcEEEEEE-Ecccc
Confidence 4789999999999999999999999999999 778887 47889999999999854 899999997 553
Q ss_pred -----hhhh-hcchhhhHHHHhccCCCeEEEEcCCCcCCCcccccCcceEEEEeCCeEEEccccCCCCCcCCCCCCCCCC
Q 002219 437 -----ALAL-KINSVYSKRKLLSIHENVRVLRYPDHFASGVYLWSHHEKLVIVDYQICFIGGLDLCFGRYDTFEHKIGDN 510 (952)
Q Consensus 437 -----~~~l-~~~s~~~k~~L~~l~~gI~V~r~P~~~~~~~~~~rhHrKivVIDg~vAFvGGiNL~~gRwDt~~H~l~D~ 510 (952)
|... ..+..+. ..|.+.++||+|..|.........+.++|+|++|||++++|+| +||.
T Consensus 93 ~Rg~iG~~~~~~~~~~~-~~l~~~~~gv~v~~f~~p~~~~e~~gr~HrKi~IiD~~v~ysG-aNi~-------------- 156 (451)
T PRK09428 93 QRGLIGAAASNTNADWY-CEMAQEYPGVDIPVYGVPVNTREALGVLHLKGFIIDDTVLYSG-ASLN-------------- 156 (451)
T ss_pred cccccccCCCCcCHHHH-HHHHHhCCCceEEEcCCccccchhhhhceeeEEEECCCEEEec-cccc--------------
Confidence 3211 1222222 3455545689988772222223456789999999999999997 7993
Q ss_pred CCCcCCCCCCCCCCCCCCCCccccccccccCCCCCCCCeEEEEEEEEChHHHHHHHHHHHHHHhhhcCCCCCCCCccccC
Q 002219 511 PPLIWPGKDYYNPRESEPNSWEDTMRDELDRGKYPRMPWHDIHCALWGPPCRDVARHFVQRWNYAKRNKAPNEETIPLLM 590 (952)
Q Consensus 511 ~~~~~~G~dY~n~~~~d~~~~~~~~~d~~dr~~~pr~pWhDv~~~v~Gpaa~dl~~~F~qrWn~~~~~k~~~~~~~p~l~ 590 (952)
++|... . ++ ...|..++|+||++.++...|+++|..+...-.. -..+. .
T Consensus 157 -------d~Yl~~-------------------~-~~-~r~Dry~~i~g~~la~~~~~fi~~~~~~~~~v~~--l~~~~-~ 205 (451)
T PRK09428 157 -------NVYLHQ-------------------H-DK-YRYDRYHLIRNAELADSMVNFIQQNLLNSPAVNR--LDQPN-R 205 (451)
T ss_pred -------HHHhcC-------------------C-cc-cCcceEEEEeCchHHHHHHHHHHHHhhccCcccc--ccccc-c
Confidence 556541 0 11 1126788899999999999999999765421000 00000 0
Q ss_pred CccccccccccCCcchhhhcccccccccccccccccccccCccCCCCCCCCCCCccccCCCCCCcCCCCCcccccccccc
Q 002219 591 PQHQMVIPHYMGRSREVEVESKNVEDNSKSIKRQDSFTFRSSLQDIPLLLPQEPEVLDDSSRGLIPNGLDYTTTKSASFR 670 (952)
Q Consensus 591 P~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~p~l~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 670 (952)
|. .+++.. .+ |. +.. .+.
T Consensus 206 ~~-----------~~~~~~----------~~-~~--~~~-----~l~--------------------------------- 223 (451)
T PRK09428 206 PK-----------TKEIKN----------DI-RQ--FRQ-----RLR--------------------------------- 223 (451)
T ss_pred cc-----------chhhHH----------HH-HH--HHH-----HHh---------------------------------
Confidence 00 000000 00 00 000 000
Q ss_pred cccccccccccCCCCCCccCCCCCCCcccccccccccCCCCCCCCchhhhhcccCCccCCCCccCCCCCCCCceEEEeec
Q 002219 671 YQKAKIEPVVTDMPMKGFVDDRDSPHHHLKTSLDVMTLPGTKSSDIEWWETQERGDQVGSTDETGQVGPRASCRCQIIRS 750 (952)
Q Consensus 671 ~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vQilRS 750 (952)
... + +.. ...+...+|+...
T Consensus 224 -----------~~~---------------------------------~--------~~~--------~~~~~~~~~v~p~ 243 (451)
T PRK09428 224 -----------DAA---------------------------------Y--------QFQ--------GQANNDELSVTPL 243 (451)
T ss_pred -----------hhc---------------------------------c--------Ccc--------cccCCCCeEEeee
Confidence 000 0 000 0001123455544
Q ss_pred CCcccCCCcccHHHHHHHHHHHHHhccCeEEEEeeeeccCCCCChhHHHHHHHHHHHHHHHHHHcCCceEEEEEecCCC-
Q 002219 751 VSQWSAGTSQLEESIHCAYCSLIEKAEHFIYIENQFFISGLSGDEIIRNRVLESLYRRILRAYNEKKCFRVIIVIPLLP- 829 (952)
Q Consensus 751 ~~~wS~G~~~~E~sI~~ayl~~I~~A~~~IYIEnqyFis~~~~~~~v~n~I~~AL~~RI~~A~~~g~~vrV~IvlPl~p- 829 (952)
.+ .|+. ..+...++.+|..|++.|+|.||||+++. .+.+||. +|+++| ++|.||+|...
T Consensus 244 ~g---~g~~---~~l~~~~~~li~~A~~~i~I~TPYF~p~~--------~l~~~L~----~a~~rG--v~V~Ii~~~~~a 303 (451)
T PRK09428 244 VG---LGKK---NLLNKTIFHLMASAEQKLTICTPYFNLPA--------ILVRNII----RLLRRG--KKVEIIVGDKTA 303 (451)
T ss_pred ec---cCCc---hHHHHHHHHHHhccCcEEEEEeCCcCCCH--------HHHHHHH----HHHhcC--CcEEEEcCCccc
Confidence 32 2432 68899999999999999999999999984 5777775 888899 45566678542
Q ss_pred -CCCCCCCCCCchhHH-HHHHHHHHHHHhhHHHHHHHHHHhcC---CCcccccccccccccccccCCCCcccccceeeee
Q 002219 830 -GFQGGVDDGGAASVR-AIMHWQYRTICRGQNSILHNLYALLG---PKTHDYISFYGLRAYGRLFEDGPVATSQVYVHSK 904 (952)
Q Consensus 830 -gf~g~~~d~~~~~~r-~i~~~qy~ti~rg~~si~~~L~~~~G---v~~~~Yi~f~~lr~~~~~~~~g~~~te~iyvHSK 904 (952)
||-+.- + ..-+. ....+-|..+-|.-...+..|.+ .| +.+++| ....+|+|
T Consensus 304 ndfy~~~-d--~~~~~~~~~py~ye~~lr~f~~~~~~li~-~G~l~v~i~~~--------------------~~~~~HaK 359 (451)
T PRK09428 304 NDFYIPP-D--EPFKIIGALPYLYEINLRRFAKRLQYYID-NGQLNVRLWKD--------------------GDNSYHLK 359 (451)
T ss_pred ccCcCCC-c--cHHHHhhhhHHHHHHhhhhhHHHhhhhhh-cCcceEEEEec--------------------CCCcceEE
Confidence 222110 1 00000 11112222221111111223444 34 333322 13579999
Q ss_pred EEEEeCcEEEEecccCCcCccCCCCCcceEEEEEchh
Q 002219 905 VMIIDDSIALIGSANINDRSLLGSRDSEVSVGLYLFI 941 (952)
Q Consensus 905 lmIVDD~~~iIGSANin~RSm~G~rDsEi~v~i~d~~ 941 (952)
.|+|||++++|||+|+|.||+ .+|.|++++|+|+.
T Consensus 360 ~i~vD~~~~~iGS~Nld~RS~--~ln~E~~l~i~d~~ 394 (451)
T PRK09428 360 GIWVDDRWMLLTGNNLNPRAW--RLDLENALLIHDPK 394 (451)
T ss_pred EEEEeCCEEEEcCCCCChhHh--hhcccceEEEECCh
Confidence 999999999999999999999 99999999999985
No 11
>PHA02820 phospholipase-D-like protein; Provisional
Probab=100.00 E-value=1.8e-34 Score=331.31 Aligned_cols=337 Identities=18% Similarity=0.193 Sum_probs=216.5
Q ss_pred HHHHHHHHHHHHhcccEEEEeeecCCceeEEEcCCC--CchhHHHHHHHHHHhhCCcEEEEEEccchhhhhhcchhhhHH
Q 002219 372 KAAFEAIASSIEDAKSEIFICGWWLCPELYLRRPFH--NHASSRLDALLEAKAKQGVQIYILLYKEVALALKINSVYSKR 449 (952)
Q Consensus 372 ~~~f~al~~aI~~Ak~~I~I~~W~lsPe~Yl~rp~~--d~~~~rL~~~L~~aA~rGVkVrILl~d~~~~~l~~~s~~~k~ 449 (952)
...|+.+.++|.+||++|+|+. +|+..+.. ...+.+|.++|++||+|||+||||+ |..+. ...+. .
T Consensus 25 ~~t~~~~~~lI~~Ak~~I~I~s------~yf~~~d~~~~~~G~~i~~aL~~aA~rGV~VRIL~-d~~~~----~~~~~-~ 92 (424)
T PHA02820 25 LSTFNFWREILSNTTKTLDISS------FYWSLSDEVGTNFGTMILNEIIQLPKRGVRVRIAV-NKSNK----PLKDV-E 92 (424)
T ss_pred CCHHHHHHHHHHhhCcEEEEEe------EEEecCccccchhHHHHHHHHHHHHHCCCEEEEEE-CCCCC----chhhH-H
Confidence 3678999999999999999963 34332211 1348899999999999999999986 54321 22222 3
Q ss_pred HHhccCCCeEEEEcCCCcCCCcccccCcceEEEEeCCeEEEccccCCCCCcCCCCCCCCCCCCCcCCCCCCCCCCCCCCC
Q 002219 450 KLLSIHENVRVLRYPDHFASGVYLWSHHEKLVIVDYQICFIGGLDLCFGRYDTFEHKIGDNPPLIWPGKDYYNPRESEPN 529 (952)
Q Consensus 450 ~L~~l~~gI~V~r~P~~~~~~~~~~rhHrKivVIDg~vAFvGGiNL~~gRwDt~~H~l~D~~~~~~~G~dY~n~~~~d~~ 529 (952)
.|.+ +||+|..+... .....++|+|++|||++++|+||+|+.+ | |..
T Consensus 93 ~L~~--aGv~v~~~~~~---~~~~~~~HrK~~VIDg~~~~iGS~Nid~-r--------------------sl~------- 139 (424)
T PHA02820 93 LLQM--AGVEVRYIDIT---NILGGVLHTKFWISDNTHIYLGSANMDW-R--------------------SLT------- 139 (424)
T ss_pred HHHh--CCCEEEEEecC---CCCcccceeeEEEECCCEEEEeCCcCCh-h--------------------hhh-------
Confidence 4543 79999877321 1234679999999999999999999941 2 111
Q ss_pred CccccccccccCCCCCCCCeEEEEEEE--EChHHHHHHHHHHHHHHhhhcCCCCCCCCccccCCccccccccccCCcchh
Q 002219 530 SWEDTMRDELDRGKYPRMPWHDIHCAL--WGPPCRDVARHFVQRWNYAKRNKAPNEETIPLLMPQHQMVIPHYMGRSREV 607 (952)
Q Consensus 530 ~~~~~~~d~~dr~~~pr~pWhDv~~~v--~Gpaa~dl~~~F~qrWn~~~~~k~~~~~~~p~l~P~~~~~~~~y~~~~~~~ 607 (952)
..+|+++.+ +||+|.+|++.|.++|++.+.. . |...
T Consensus 140 ------------------~n~E~gv~i~~~g~~v~~L~~~F~~dW~~~~~~-~----------~~~~------------- 177 (424)
T PHA02820 140 ------------------QVKELGIAIFNNSNLAADLTQIFEVYWYLGVNN-L----------PYNW------------- 177 (424)
T ss_pred ------------------hCCceEEEEecchHHHHHHHHHHHHHHHhhccC-C----------CCcc-------------
Confidence 124677777 6999999999999999987421 1 1000
Q ss_pred hhcccccccccccccccccccccCccCCCCCCCCCCCccccCCCCCCcCCCCCcccccccccccccccccccccCCCCCC
Q 002219 608 EVESKNVEDNSKSIKRQDSFTFRSSLQDIPLLLPQEPEVLDDSSRGLIPNGLDYTTTKSASFRYQKAKIEPVVTDMPMKG 687 (952)
Q Consensus 608 ~~~~~~~~~~~~~~~r~~~~~~~~~~~~~p~l~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~ 687 (952)
+ ...|...++. .|+.
T Consensus 178 --------------------~-----~~~~~~~~~~---------------------------------------~p~~- 192 (424)
T PHA02820 178 --------------------K-----NFYPLYYNTD---------------------------------------HPLS- 192 (424)
T ss_pred --------------------c-----cccccccccC---------------------------------------CCcc-
Confidence 0 0001000000 0000
Q ss_pred ccCCCCCCCcccccccccccCCCCCCCCchhhhhcccCCccCCCCccCCCCCCCCceEEEeecCCcccCCCcccHHHHHH
Q 002219 688 FVDDRDSPHHHLKTSLDVMTLPGTKSSDIEWWETQERGDQVGSTDETGQVGPRASCRCQIIRSVSQWSAGTSQLEESIHC 767 (952)
Q Consensus 688 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vQilRS~~~wS~G~~~~E~sI~~ 767 (952)
....+....|++-|.|.-..+.. -.....
T Consensus 193 -------------------------------------------------~~~~~~~~~~~~sssP~~~~~~~--r~~~~~ 221 (424)
T PHA02820 193 -------------------------------------------------LNVSGVPHSVFIASAPQQLCTME--RTNDLT 221 (424)
T ss_pred -------------------------------------------------cccCCccceEEEeCCChhhcCCC--CCchHH
Confidence 00011112355555443211110 124579
Q ss_pred HHHHHHHhccCeEEEEeeeeccC---CCCChhHHHHHHHHHHHHHHH-HHHcCCceEEEEEecCCCCCCCCCCCCCchhH
Q 002219 768 AYCSLIEKAEHFIYIENQFFISG---LSGDEIIRNRVLESLYRRILR-AYNEKKCFRVIIVIPLLPGFQGGVDDGGAASV 843 (952)
Q Consensus 768 ayl~~I~~A~~~IYIEnqyFis~---~~~~~~v~n~I~~AL~~RI~~-A~~~g~~vrV~IvlPl~pgf~g~~~d~~~~~~ 843 (952)
+|+.+|.+|+++|||+++||+|. ..........|.+||. + |++|| |+|.|++|..++ . .
T Consensus 222 ~~l~~I~~Ak~~I~I~tpyfvP~~~~~~~~~~yw~~i~~AL~----~AA~~RG--V~VriLvp~~~d----~---~---- 284 (424)
T PHA02820 222 ALLSCIRNASKFVYVSVMNFIPIIYSKAGKILFWPYIEDELR----RAAIDRK--VSVKLLISCWQR----S---S---- 284 (424)
T ss_pred HHHHHHHHHhhEEEEEEccccceeeccCCcccchHHHHHHHH----HHHHhCC--CEEEEEEeccCC----C---C----
Confidence 99999999999999999999998 2111122236888885 5 55688 566666897654 1 0
Q ss_pred HHHHHHHHHHHHhhHHHHHHHHHHhcCCCcccccccccccccccccCCCCcccccceeeeeEEEEeCcEEEEecccCCcC
Q 002219 844 RAIMHWQYRTICRGQNSILHNLYALLGPKTHDYISFYGLRAYGRLFEDGPVATSQVYVHSKVMIIDDSIALIGSANINDR 923 (952)
Q Consensus 844 r~i~~~qy~ti~rg~~si~~~L~~~~Gv~~~~Yi~f~~lr~~~~~~~~g~~~te~iyvHSKlmIVDD~~~iIGSANin~R 923 (952)
.+.|+ ....+..|.+ .|+++. +.+|....+ .+.+....++|||+||||| ++.|||||||.|
T Consensus 285 --~~~~a-------~~~~l~~L~~-~gv~I~--Vk~y~~p~~------~~~~~~~~f~HaK~~vvD~-~a~IGTsN~D~r 345 (424)
T PHA02820 285 --FIMRN-------FLRSIAMLKS-KNINIE--VKLFIVPDA------DPPIPYSRVNHAKYMVTDK-TAYIGTSNWTGN 345 (424)
T ss_pred --ccHHH-------HHHHHHHHhc-cCceEE--EEEEEcCcc------cccCCcceeeeeeEEEEcc-cEEEECCcCCHH
Confidence 11122 2345677777 687753 333311111 0111234699999999997 699999999999
Q ss_pred ccCCCCCcceEEEEEch---hhHHHhhhc
Q 002219 924 SLLGSRDSEVSVGLYLF---ILRWELTDL 949 (952)
Q Consensus 924 Sm~G~rDsEi~v~i~d~---~~~~~~~~~ 949 (952)
|+ ..+.|++++++++ +++.+|+++
T Consensus 346 sf--~~n~ev~~~i~~~~~~~~~~~l~~~ 372 (424)
T PHA02820 346 YF--TDTCGVSINITPDDGLGLRQQLEDI 372 (424)
T ss_pred HH--hccCcEEEEEecCCcHHHHHHHHHH
Confidence 99 8999999999997 799999864
No 12
>PHA03003 palmytilated EEV membrane glycoprotein; Provisional
Probab=100.00 E-value=1.6e-34 Score=327.10 Aligned_cols=319 Identities=19% Similarity=0.202 Sum_probs=211.0
Q ss_pred HHHHHHHHHHHhcccEEEEeeecCCceeEE--EcCCCCchhHHHHHHHHHHhhCCcEEEEEEccchhhhhhcchhhhHHH
Q 002219 373 AAFEAIASSIEDAKSEIFICGWWLCPELYL--RRPFHNHASSRLDALLEAKAKQGVQIYILLYKEVALALKINSVYSKRK 450 (952)
Q Consensus 373 ~~f~al~~aI~~Ak~~I~I~~W~lsPe~Yl--~rp~~d~~~~rL~~~L~~aA~rGVkVrILl~d~~~~~l~~~s~~~k~~ 450 (952)
..|++++++|++||++|+| |+|+ +. .|..+.+|.++|++||+|||+||||+ |..+. ..+. +.
T Consensus 31 ~~~~~l~~~I~~Ak~~I~i-------~~yi~~~~--~d~~g~~i~~aL~~aa~rGV~Vril~-D~~~~-----~~~~-~~ 94 (369)
T PHA03003 31 STYECFDEIISQAKKYIYI-------ASFCCNLR--STPEGRLILDKLKEAAESGVKVTILV-DEQSG-----DKDE-EE 94 (369)
T ss_pred CHHHHHHHHHHhhhhEEEE-------EEEEeccc--CCchHHHHHHHHHHhccCCCeEEEEe-cCCCC-----CccH-HH
Confidence 6899999999999999999 8898 55 47889999999999999999999985 65431 2222 45
Q ss_pred HhccCCCeEEEEcCC-CcCCCcccccCcceEEEEeCCeEEEccccCCCCCcCCCCCCCCCCCCCcCCCCCCCCCCCCCCC
Q 002219 451 LLSIHENVRVLRYPD-HFASGVYLWSHHEKLVIVDYQICFIGGLDLCFGRYDTFEHKIGDNPPLIWPGKDYYNPRESEPN 529 (952)
Q Consensus 451 L~~l~~gI~V~r~P~-~~~~~~~~~rhHrKivVIDg~vAFvGGiNL~~gRwDt~~H~l~D~~~~~~~G~dY~n~~~~d~~ 529 (952)
|.+ +||+|..+.. .+.. .+.+|.|++||||++||+||+|+. ++|.+.
T Consensus 95 L~~--~Gv~v~~~~~~~~~~---~~~~~~k~~IiDg~~~y~Gg~Ni~---------------------~~~~~~------ 142 (369)
T PHA03003 95 LQS--SNINYIKVDIGKLNN---VGVLLGSFWVSDDRRCYIGNASLT---------------------GGSIST------ 142 (369)
T ss_pred HHH--cCCEEEEEeccccCC---CCceeeeEEEEcCcEEEEecCccC---------------------CcccCc------
Confidence 554 6899876532 1110 124589999999999999999994 445442
Q ss_pred CccccccccccCCCCCCCCeEEEEEEEEChHHHHHHHHHHHHHHhhhcCCCCCCCCccccCCccccccccccCCcchhhh
Q 002219 530 SWEDTMRDELDRGKYPRMPWHDIHCALWGPPCRDVARHFVQRWNYAKRNKAPNEETIPLLMPQHQMVIPHYMGRSREVEV 609 (952)
Q Consensus 530 ~~~~~~~d~~dr~~~pr~pWhDv~~~v~Gpaa~dl~~~F~qrWn~~~~~k~~~~~~~p~l~P~~~~~~~~y~~~~~~~~~ 609 (952)
....+.|+|. ||+|.+|++.|.+.|+.++++..... .+
T Consensus 143 -------------~~~~g~~~d~-----g~~v~~l~~~F~~~w~~~~~~~~~~~------~~------------------ 180 (369)
T PHA03003 143 -------------IKTLGVYSTY-----PPLATDLRRRFDTFKAFNKNKSVFNR------LC------------------ 180 (369)
T ss_pred -------------cccceeEecC-----cHHHHHHHHHHHHHHHhcCCCCcccc------cc------------------
Confidence 1123579994 99999999999999998743221000 00
Q ss_pred cccccccccccccccccccccCccCCCCCCCCCCCccccCCCCCCcCCCCCcccccccccccccccccccccCCCCCCcc
Q 002219 610 ESKNVEDNSKSIKRQDSFTFRSSLQDIPLLLPQEPEVLDDSSRGLIPNGLDYTTTKSASFRYQKAKIEPVVTDMPMKGFV 689 (952)
Q Consensus 610 ~~~~~~~~~~~~~r~~~~~~~~~~~~~p~l~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~ 689 (952)
.+...|... +
T Consensus 181 --------------------------~~~~~~~~~---------------------------------------~----- 190 (369)
T PHA03003 181 --------------------------CACCLPVST---------------------------------------K----- 190 (369)
T ss_pred --------------------------cccCCcccc---------------------------------------c-----
Confidence 000000000 0
Q ss_pred CCCCCCCcccccccccccCCCCCCCCchhhhhcccCCccCCCCccCCCCCCCCceEEEeecCCcccCCCcccHHHHHHHH
Q 002219 690 DDRDSPHHHLKTSLDVMTLPGTKSSDIEWWETQERGDQVGSTDETGQVGPRASCRCQIIRSVSQWSAGTSQLEESIHCAY 769 (952)
Q Consensus 690 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vQilRS~~~wS~G~~~~E~sI~~ay 769 (952)
++ .. .+.+ .+++-|.|.-..+. ....++.+|
T Consensus 191 ----------------------------~~--------------~~--~~~~---~~~~~s~P~~~~~~--~~~~~~~~l 221 (369)
T PHA03003 191 ----------------------------YH--------------IN--NPIG---GVFFSDSPEHLLGY--SRTLDADVV 221 (369)
T ss_pred ----------------------------cc--------------cc--CCCc---ceEEecCChHHcCC--CCCcCHHHH
Confidence 00 00 0001 12443433211010 123578999
Q ss_pred HHHHHhccCeEEEEeeeeccCCCCCh--hHHHHHHHHHHHHHHHHH-HcCCceEEEEEecCCCCCCCCCCCCCchhHHHH
Q 002219 770 CSLIEKAEHFIYIENQFFISGLSGDE--IIRNRVLESLYRRILRAY-NEKKCFRVIIVIPLLPGFQGGVDDGGAASVRAI 846 (952)
Q Consensus 770 l~~I~~A~~~IYIEnqyFis~~~~~~--~v~n~I~~AL~~RI~~A~-~~g~~vrV~IvlPl~pgf~g~~~d~~~~~~r~i 846 (952)
+++|.+|+++|+|+++||+|....++ .....|.+||. +|+ ++| |+|.|++|.... .+. .
T Consensus 222 l~~I~~Ak~~I~I~t~yf~P~~~~d~~~~~~~~i~~AL~----~AAa~RG--V~VRILv~~~~~-----~~~---~---- 283 (369)
T PHA03003 222 LHKIKSAKKSIDLELLSLVPVIREDDKTTYWPDIYNALI----RAAINRG--VKVRLLVGSWKK-----NDV---Y---- 283 (369)
T ss_pred HHHHHHHhhEEEEEEeccccEEeeCCCCccHHHHHHHHH----HHHHcCC--CEEEEEEecCCc-----CCc---h----
Confidence 99999999999999999988632221 12345666664 774 899 555555774211 110 0
Q ss_pred HHHHHHHHHhhHHHHHHHHHHhcCCCcccccccccccccccccCCCCcccccceeeeeEEEEeCcEEEEecccCCcCccC
Q 002219 847 MHWQYRTICRGQNSILHNLYALLGPKTHDYISFYGLRAYGRLFEDGPVATSQVYVHSKVMIIDDSIALIGSANINDRSLL 926 (952)
Q Consensus 847 ~~~qy~ti~rg~~si~~~L~~~~Gv~~~~Yi~f~~lr~~~~~~~~g~~~te~iyvHSKlmIVDD~~~iIGSANin~RSm~ 926 (952)
..+++..|++ +|+...-.+.+|. ..+|+|+|||||++++|||+||+.||+
T Consensus 284 -----------~~~~~~~L~~-~G~~~~i~vri~~-----------------~~~H~K~~VVD~~~a~iGS~N~d~~s~- 333 (369)
T PHA03003 284 -----------SMASVKSLQA-LCVGNDLSVKVFR-----------------IPNNTKLLIVDDEFAHITSANFDGTHY- 333 (369)
T ss_pred -----------hhhHHHHHHH-cCCCCCceEeeec-----------------CCCCceEEEEcCCEEEEeccccCchhh-
Confidence 2346778888 7854321122220 017999999999999999999999999
Q ss_pred CCCCcceEEEEEchhhHHHhhhc
Q 002219 927 GSRDSEVSVGLYLFILRWELTDL 949 (952)
Q Consensus 927 G~rDsEi~v~i~d~~~~~~~~~~ 949 (952)
..+.|+++.+++++++.+|.++
T Consensus 334 -~~~~e~~~~~~~~~~a~~l~~~ 355 (369)
T PHA03003 334 -LHHAFVSFNTIDKELVKELSAI 355 (369)
T ss_pred -ccCCCeEEecCChhHHHHHHHH
Confidence 7899999999999999998753
No 13
>cd07297 PX_PLD2 The phosphoinositide binding Phox Homology domain of Phospholipase D2. The PX domain is a phosphoinositide (PI) binding module present in many proteins with diverse functions such as cell signaling, vesicular trafficking, protein sorting, and lipid modification, among others. Phospholipase D (PLD) catalyzes the hydrolysis of the phosphodiester bond of phosphatidylcholine to generate membrane-bound phosphatidic acid and choline. PLD activity has been detected in viruses, bacteria, yeast, plants, and mammals, but the PX domain is not present in PLDs from viruses and bacteria. PLDs are implicated in many cellular functions like signaling, cytoskeletal reorganization, vesicular transport, stress responses, and the control of differentiation, proliferation, and survival. PLD2 contains PX and Pleckstrin Homology (PH) domains in addition to the catalytic domain. It mediates EGF-dependent insulin secretion and EGF-induced Ras activation by the guanine nucleotide-exchange factor
Probab=99.95 E-value=2.1e-27 Score=225.62 Aligned_cols=129 Identities=23% Similarity=0.335 Sum_probs=109.2
Q ss_pred CCC-eEEEeeeeecCCCCCCcceeEEEEEEEecceEEEEEEehhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCC
Q 002219 42 ELP-KASIVSVSRPDAGDISPMLLSYTIEVQYKQFKWKLVKKASQVFYLHFALKRRAFFEEIQEKQEQVKEWLQNLGMGD 120 (952)
Q Consensus 42 ~~p-~v~I~~~er~~s~~~~~~~~~Y~Iel~~g~~~W~v~r~~~~f~~Lh~~lk~~~~~~~~~~~~~~~~~~~~~~~~~~ 120 (952)
++| +|+|+++||++++.+..+.++|+|||+||+|+|+|+|+||||+.||++|.+ +|++++.+|+++
T Consensus 1 g~pi~~~V~~~er~~s~s~~~~~~lYtIeltHG~F~W~IkRryKhF~~LHr~L~~-------------~k~~~~~~P~~~ 67 (130)
T cd07297 1 GVPVTAKVENTERYTTGSKVHVCTLYTVRLTHGEFTWTVKKKFKHFQELHRDLYR-------------HKVMLSFLPLGR 67 (130)
T ss_pred CCceEEEEEEEEEeecccccccceeEEEEEecCceEEEEEehhhhHHHHHHHHHH-------------HHHhhhcCCchh
Confidence 357 999999999999888888899999999999999999999999999998875 888887778887
Q ss_pred CccccccCccccccccccccccccCCCCCCCCCCCCCCccccCCCcchHHHHHHHHHHHHHHhccccccchhhhheeeec
Q 002219 121 HMAVVQEDDEGDEIAVNHDESSKKRDVPANAALPVIRPALGRQHSMSDRAKVAMQQYLNHFLGNMDIVNSREVCKFLEAS 200 (952)
Q Consensus 121 ~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~lp~~~~~~~~~~~~~~r~~~~LE~YL~~lL~~~~~~n~~~l~~FlevS 200 (952)
++..++. .....+++||+ ||+..+.+ ++++++|+ ++||+|||.||++++|+|+++++||||||
T Consensus 68 ~~~~r~~-----------~~~~~~~~mP~---LP~~~~~~--~~~~~sr~-kqLE~YLn~LL~~~~YRn~~atleFLeVS 130 (130)
T cd07297 68 FAIQHRQ-----------QLEGLTEEMPS---LPGTDREA--SRRTASKP-KYLENYLNNLLENSFYRNYHAMMEFLAVS 130 (130)
T ss_pred hhhhhcc-----------ccccccCcCCC---CCCCCchh--hhhhhhHH-HHHHHHHHHHhcchhhcCChhheeeeecC
Confidence 7654321 12345688999 99875544 56788776 59999999999999999999999999998
No 14
>cd01254 PH_PLD Phospholipase D (PLD) pleckstrin homology (PH) domain. Phospholipase D (PLD) pleckstrin homology (PH) domain. PLD hydrolyzes phosphatidylcholine to phosphatidic acid (PtdOH), which can bind target proteins. PLD contains a PH domain, a PX domain and four conserved PLD signature domains. The PLD PH domain is specific for bisphosphorylated inositides. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains.
Probab=99.89 E-value=7.6e-23 Score=197.60 Aligned_cols=121 Identities=37% Similarity=0.647 Sum_probs=104.5
Q ss_pred ceeEEEeeecCCccCCCCCCcccccCCCccccCCcceEEEEEeCCeEEEEeCCCCCCccEEEEEeCCCCCCCCCCCcccc
Q 002219 213 KEDYVMAKHLPKISRNDDSRKCCCCPLFTCCNDNWQKVWAVLKPGFLALLADPFDTKPMDIIVFDVLPASDGNGEGRVSL 292 (952)
Q Consensus 213 KEG~l~kr~~~~~~G~~~~~~~~~~~~~~~~~~rw~kRWfvVKdSfL~yv~d~~~~~~~~v~l~D~~~~~~~~~~~~~~~ 292 (952)
|||||+||++++.+| +...||+|.++.+|..+|+|||||||+|||+|+++|.+.+|++|||||..|.+..++...+.+
T Consensus 1 keG~i~kr~g~~~~~--~~~~~~~~~~~~~~~~~w~kRWFvlr~s~L~Y~~~~~~~~~~~vil~D~~f~v~~~~~~~~~~ 78 (121)
T cd01254 1 KEGYIMKRSGGKRSG--SDDCSFGCCCFCRMCDRWQKRWFIVKESFLAYMDDPSSAQILDVILFDVDFKVNGGGKEDISL 78 (121)
T ss_pred CCceEEeCCCCCcCC--cccccccccCCcccccCCcceeEEEeCCEEEEEcCCCCCceeeEEEEcCCccEEeCCcccccc
Confidence 799999999877765 222255556677777999999999999999999999999999999999999888665555666
Q ss_pred cccccccCCcceeEEEEeCceEEEEEecchhhHHHHHHHHHhc
Q 002219 293 ATEVKERNPLRHAFKVTCGVRSIRLRTRTGAKVRDWVAAINDA 335 (952)
Q Consensus 293 ~~~~~~~~~~~~~~~i~~~~r~l~l~~~s~~~~~~w~~~i~~~ 335 (952)
+.++++.++.++||+|.|++|++.|+|.|++++++|.++|+++
T Consensus 79 ~~~~~~~~~~~~~~~i~t~~R~~~l~a~s~~~~~~Wi~~i~~a 121 (121)
T cd01254 79 AVELKDITGLRHGLKITNSNRSLKLKCKSSRKLKQWMASIEDA 121 (121)
T ss_pred cccccccCCCceEEEEEcCCcEEEEEeCCHHHHHHHHHHHHhC
Confidence 7777778899999999999999999999999999999999874
No 15
>cd07296 PX_PLD1 The phosphoinositide binding Phox Homology domain of Phospholipase D1. The PX domain is a phosphoinositide binding module present in many proteins with diverse functions such as cell signaling, vesicular trafficking, protein sorting, and lipid modification, among others. Phospholipase D (PLD) catalyzes the hydrolysis of the phosphodiester bond of phosphatidylcholine to generate membrane-bound phosphatidic acid and choline. PLDs are implicated in many cellular functions like signaling, cytoskeletal reorganization, vesicular transport, stress responses, and the control of differentiation, proliferation, and survival. PLD1 contains PX and Pleckstrin Homology (PH) domains in addition to the catalytic domain. It acts as an effector of Rheb in the signaling of the mammalian target of rapamycin (mTOR), a serine/threonine protein kinase that transduces nutrients and other stimuli to regulate many cellular processes. PLD1 also regulates the secretion of the procoagulant von Will
Probab=99.88 E-value=6.2e-23 Score=199.29 Aligned_cols=130 Identities=26% Similarity=0.395 Sum_probs=102.6
Q ss_pred CCC-eEEEeeeeecCCCC--CCcceeEEEEEEEecceEEEEEEehhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCC
Q 002219 42 ELP-KASIVSVSRPDAGD--ISPMLLSYTIEVQYKQFKWKLVKKASQVFYLHFALKRRAFFEEIQEKQEQVKEWLQNLGM 118 (952)
Q Consensus 42 ~~p-~v~I~~~er~~s~~--~~~~~~~Y~Iel~~g~~~W~v~r~~~~f~~Lh~~lk~~~~~~~~~~~~~~~~~~~~~~~~ 118 (952)
++| +|+|++|||++++. +.+++++|+|+++||.|+|+|+|+|+||..||.+|.. +++.+ .+|+
T Consensus 1 g~~i~~~i~~~eR~~~~~~~~~~~~t~Y~I~v~~g~~~w~V~rRy~~F~~Lh~~L~~-------------~~~~~-~~pl 66 (135)
T cd07296 1 GCPIKARVLEVERFTSTSDVKKPSLNVYTIELTHGEFTWQVKRKFKHFQELHRELLR-------------YKAFI-RIPI 66 (135)
T ss_pred CCceEEEEEEEEEeeccccccccceEEEEEEEEeCCEEEEEEeehHHHHHHHHHHHh-------------cCCCC-CCCC
Confidence 367 99999999999886 7888999999999999999999999999999998874 33333 3343
Q ss_pred CC--CccccccCccccccccccccccccCCCCCCCCCCCCCCccccCCCcchHHHHHHHHHHHHHHhccccccchhhhhe
Q 002219 119 GD--HMAVVQEDDEGDEIAVNHDESSKKRDVPANAALPVIRPALGRQHSMSDRAKVAMQQYLNHFLGNMDIVNSREVCKF 196 (952)
Q Consensus 119 ~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~lp~~~~~~~~~~~~~~r~~~~LE~YL~~lL~~~~~~n~~~l~~F 196 (952)
|. |...++ ....++.+.||+ ||+......+++.+++|+ ++||+||+.||++++++|++++++|
T Consensus 67 P~k~~~~~r~-----------~~~~~~~~~~p~---lp~~~~~~v~e~~~~sRr-~~LE~YL~~LL~~~~~Rn~~a~~eF 131 (135)
T cd07296 67 PTRSHTVRRQ-----------TIKRGEPRHMPS---LPRGAEEEAREEQFSSRR-KQLEDYLSKLLKMPMYRNYHATMEF 131 (135)
T ss_pred Ccccchhhcc-----------cccccccccccc---CCCCCCccccccchHHHH-HHHHHHHHHHhcChhhcCCHHHHhh
Confidence 32 222211 111245578888 887655556777788786 5999999999999999999999999
Q ss_pred eeec
Q 002219 197 LEAS 200 (952)
Q Consensus 197 levS 200 (952)
||||
T Consensus 132 LeVs 135 (135)
T cd07296 132 IDVS 135 (135)
T ss_pred eecC
Confidence 9998
No 16
>cd06895 PX_PLD The phosphoinositide binding Phox Homology domain of Phospholipase D. The PX domain is a phosphoinositide (PI) binding module present in many proteins with diverse functions such as cell signaling, vesicular trafficking, protein sorting, and lipid modification, among others. Phospholipase D (PLD) catalyzes the hydrolysis of the phosphodiester bond of phosphatidylcholine to generate membrane-bound phosphatidic acid and choline. Members of this subfamily contain PX and Pleckstrin Homology (PH) domains in addition to the catalytic domain. PLD activity has been detected in viruses, bacteria, yeast, plants, and mammals, but the PX domain is not present in PLDs from viruses and bacteria. PLDs are implicated in many cellular functions like signaling, cytoskeletal reorganization, vesicular transport, stress responses, and the control of differentiation, proliferation, and survival. Vertebrates contain two PLD isozymes, PLD1 and PLD2. PLD1 is located mainly in intracellular membr
Probab=99.85 E-value=3e-21 Score=190.53 Aligned_cols=137 Identities=28% Similarity=0.327 Sum_probs=102.7
Q ss_pred CCeEEEeeeeecCCCCCCcceeEEEEEEEecceEEEEEEehhhHHHHHHHHHHH-HHHHHHHHHHHHHHHHHhhcCCCCC
Q 002219 43 LPKASIVSVSRPDAGDISPMLLSYTIEVQYKQFKWKLVKKASQVFYLHFALKRR-AFFEEIQEKQEQVKEWLQNLGMGDH 121 (952)
Q Consensus 43 ~p~v~I~~~er~~s~~~~~~~~~Y~Iel~~g~~~W~v~r~~~~f~~Lh~~lk~~-~~~~~~~~~~~~~~~~~~~~~~~~~ 121 (952)
+++|+|++++|.+++.+..++++|+|||+||.++|+|+|+|+||..||.+|+.. ++++..+...++...|++..+.
T Consensus 3 ~i~a~I~~~er~~~~~~~~~~~~Y~Iev~~g~~~W~V~RRy~~F~~Lh~~L~~~~~~l~~p~p~k~~~~~~~~~~~~--- 79 (140)
T cd06895 3 PIKARITDVERSGTTRHLLNPNLYTIELQHGQFTWTIKRRYKHFQELHQALKLYRALLRIPLPTRRHKEERLSLKRS--- 79 (140)
T ss_pred CcEEEEeEEeccCCCCCCCceEEEEEEEEECCEEEEEEeeHHHHHHHHHHHHHhcccccccCchHHhhhhhhccccc---
Confidence 459999999999887667789999999999999999999999999999999973 6555444444455555531110
Q ss_pred ccccccCccccccccccccccccCCCCCCCCCCCCCCccccCCCcchHHHHHHHHHHHHHHhccccccchhhhheeeec
Q 002219 122 MAVVQEDDEGDEIAVNHDESSKKRDVPANAALPVIRPALGRQHSMSDRAKVAMQQYLNHFLGNMDIVNSREVCKFLEAS 200 (952)
Q Consensus 122 ~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~lp~~~~~~~~~~~~~~r~~~~LE~YL~~lL~~~~~~n~~~l~~FlevS 200 (952)
. ++..+.+.+.+|+.++.|-++ .+.+.+. .++++||+||+.||+++.++|++++++|||||
T Consensus 80 ----~----------~~~~~~~~~~lP~lP~~~~~~---~~~~~ie-~Rr~~Le~YL~~LL~~~~~rn~~~~~~FLeVS 140 (140)
T cd06895 80 ----R----------KPEREKKNRRLPSLPALPDIL---VSEEQLD-SRKKQLENYLQNLLKIPDYRNHPETLEFLEVS 140 (140)
T ss_pred ----c----------ccccccccccCCCCCCccccc---cCHHHHH-HHHHHHHHHHHHHHcChhhhcCHHHHhhhccC
Confidence 0 112234567899955555332 2323344 44679999999999999999999999999998
No 17
>PRK05443 polyphosphate kinase; Provisional
Probab=99.85 E-value=1.1e-19 Score=218.80 Aligned_cols=274 Identities=22% Similarity=0.237 Sum_probs=195.9
Q ss_pred cHHHHHHHHHHHHHhccc-----EEEEeeecCCceeEEEcCCCCchhHHHHHHHHHHhhCCcEEEEEEccchhhhh-hcc
Q 002219 370 DGKAAFEAIASSIEDAKS-----EIFICGWWLCPELYLRRPFHNHASSRLDALLEAKAKQGVQIYILLYKEVALAL-KIN 443 (952)
Q Consensus 370 dG~~~f~al~~aI~~Ak~-----~I~I~~W~lsPe~Yl~rp~~d~~~~rL~~~L~~aA~rGVkVrILl~d~~~~~l-~~~ 443 (952)
-.-+-|..+++.|++|.+ +|.++ +|.... ..++.++|++||++||+|+||+.-.. ... ..|
T Consensus 345 ~PY~SF~~~~~~i~~Aa~DP~V~~Ik~t-------lYr~~~-----~s~iv~aL~~Aa~~Gk~V~vlve~ka-rfde~~n 411 (691)
T PRK05443 345 HPYESFDPVVEFLRQAAADPDVLAIKQT-------LYRTSK-----DSPIVDALIEAAENGKQVTVLVELKA-RFDEEAN 411 (691)
T ss_pred CCccCchHHHHHHHHhccCCCeeEEEEE-------EEEecC-----CHHHHHHHHHHHHcCCEEEEEEccCc-cccHHHH
Confidence 344567889999999998 89994 666542 48999999999999999999984221 110 112
Q ss_pred hhhhHHHHhccCCCeEEE-EcCCCcCCCcccccCcceEEEEeCC-------eEEEccccCCCCCcCCCCCCCCCCCCCcC
Q 002219 444 SVYSKRKLLSIHENVRVL-RYPDHFASGVYLWSHHEKLVIVDYQ-------ICFIGGLDLCFGRYDTFEHKIGDNPPLIW 515 (952)
Q Consensus 444 s~~~k~~L~~l~~gI~V~-r~P~~~~~~~~~~rhHrKivVIDg~-------vAFvGGiNL~~gRwDt~~H~l~D~~~~~~ 515 (952)
..|. +.|. .+||+|. .+|. +..|.|+++||++ +|++|+.|+..
T Consensus 412 ~~~~-~~L~--~aGv~V~y~~~~--------~k~HaK~~lid~~e~~~~~~~~~iGTgN~n~------------------ 462 (691)
T PRK05443 412 IRWA-RRLE--EAGVHVVYGVVG--------LKTHAKLALVVRREGGGLRRYVHLGTGNYNP------------------ 462 (691)
T ss_pred HHHH-HHHH--HcCCEEEEccCC--------ccceeEEEEEEeecCCceeEEEEEcCCCCCc------------------
Confidence 2333 3454 3899984 3342 4689999999999 99999999830
Q ss_pred CCCCCCCCCCCCCCCccccccccccCCCCCCCCeEEEEEEEEC-hHHHHHHHHHHHHHHhhhcCCCCCCCCccccCCccc
Q 002219 516 PGKDYYNPRESEPNSWEDTMRDELDRGKYPRMPWHDIHCALWG-PPCRDVARHFVQRWNYAKRNKAPNEETIPLLMPQHQ 594 (952)
Q Consensus 516 ~G~dY~n~~~~d~~~~~~~~~d~~dr~~~pr~pWhDv~~~v~G-paa~dl~~~F~qrWn~~~~~k~~~~~~~p~l~P~~~ 594 (952)
.+ -..|.|+++.+.. ..+.|+...|...|.+.....
T Consensus 463 ---------------------------~s-~~~y~D~~l~t~d~~i~~d~~~~F~~l~~~~~~~~--------------- 499 (691)
T PRK05443 463 ---------------------------KT-ARLYTDLSLLTADPEIGEDVTRLFNYLTGYSRPVK--------------- 499 (691)
T ss_pred ---------------------------ch-hhhccceeEEEeChHHHHHHHHHHHHHhCcCcccc---------------
Confidence 00 1258899999665 579999999999876531100
Q ss_pred cccccccCCcchhhhcccccccccccccccccccccCccCCCCCCCCCCCccccCCCCCCcCCCCCcccccccccccccc
Q 002219 595 MVIPHYMGRSREVEVESKNVEDNSKSIKRQDSFTFRSSLQDIPLLLPQEPEVLDDSSRGLIPNGLDYTTTKSASFRYQKA 674 (952)
Q Consensus 595 ~~~~~y~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~p~l~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 674 (952)
+ ..++
T Consensus 500 --------------------------------~---------~~l~---------------------------------- 504 (691)
T PRK05443 500 --------------------------------L---------RKLL---------------------------------- 504 (691)
T ss_pred --------------------------------c---------cEEe----------------------------------
Confidence 0 0000
Q ss_pred cccccccCCCCCCccCCCCCCCcccccccccccCCCCCCCCchhhhhcccCCccCCCCccCCCCCCCCceEEEeecCCcc
Q 002219 675 KIEPVVTDMPMKGFVDDRDSPHHHLKTSLDVMTLPGTKSSDIEWWETQERGDQVGSTDETGQVGPRASCRCQIIRSVSQW 754 (952)
Q Consensus 675 ~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vQilRS~~~w 754 (952)
+
T Consensus 505 -------------------------------------------------------------------------------~ 505 (691)
T PRK05443 505 -------------------------------------------------------------------------------V 505 (691)
T ss_pred -------------------------------------------------------------------------------e
Confidence 0
Q ss_pred cCCCcccHHHHHHHHHHHHHhccC----eEEEEeeeeccCCCCChhHHHHHHHHHHHHHHHHHHcCCceEEEE--EecCC
Q 002219 755 SAGTSQLEESIHCAYCSLIEKAEH----FIYIENQFFISGLSGDEIIRNRVLESLYRRILRAYNEKKCFRVII--VIPLL 828 (952)
Q Consensus 755 S~G~~~~E~sI~~ayl~~I~~A~~----~IYIEnqyFis~~~~~~~v~n~I~~AL~~RI~~A~~~g~~vrV~I--vlPl~ 828 (952)
| +...+..+.+.+...|.+|++ +|+|.++| +++. .|.+||+ .|+++|++|+++| +..+.
T Consensus 506 s--P~~~~~~l~~~i~~ei~~Ak~G~~a~I~ik~n~-l~d~--------~ii~aL~----~As~~GV~V~liVRGiC~l~ 570 (691)
T PRK05443 506 S--PFTLRERLLELIDREIANARAGKPARIIAKMNS-LVDP--------QIIDALY----EASQAGVKIDLIVRGICCLR 570 (691)
T ss_pred c--CccHHHHHHHHHHHHHHHHhcCCCCEEEEEcCC-CCCH--------HHHHHHH----HHHHCCCeEEEEEecccccC
Confidence 0 112366889999999999999 99999999 5552 6888887 9999998888887 33444
Q ss_pred CCCCCCCCCCCchhHHHHHHHHHHHHHhhHHHHHHHHHHhcCCCcccccccccccccccccCCCCcccccceeeeeEEEE
Q 002219 829 PGFQGGVDDGGAASVRAIMHWQYRTICRGQNSILHNLYALLGPKTHDYISFYGLRAYGRLFEDGPVATSQVYVHSKVMII 908 (952)
Q Consensus 829 pgf~g~~~d~~~~~~r~i~~~qy~ti~rg~~si~~~L~~~~Gv~~~~Yi~f~~lr~~~~~~~~g~~~te~iyvHSKlmIV 908 (952)
||..|- .|. ++. .|++.++.+ +++++.| .+|
T Consensus 571 pgipg~-sd~----i~v-------------~s~v~r~Le--h~rIy~f-------------~~g---------------- 601 (691)
T PRK05443 571 PGVPGL-SEN----IRV-------------RSIVGRFLE--HSRIYYF-------------GNG---------------- 601 (691)
T ss_pred CCCCCC-CCC----EEE-------------HHHHHHHHh--cCEEEEE-------------eCC----------------
Confidence 554432 221 111 367888887 3455432 121
Q ss_pred eCcEEEEecccCCcCccCCCCCcceEEEEEchhhHHHhhh
Q 002219 909 DDSIALIGSANINDRSLLGSRDSEVSVGLYLFILRWELTD 948 (952)
Q Consensus 909 DD~~~iIGSANin~RSm~G~rDsEi~v~i~d~~~~~~~~~ 948 (952)
||.+++|||||++.||| .++.|+++.|+|+.++.+|.+
T Consensus 602 d~~~~~iGSAn~d~Rsl--~~r~Ev~~~i~d~~~~~~l~~ 639 (691)
T PRK05443 602 GDEEVYISSADWMPRNL--DRRVEVLFPILDPRLKQRLLE 639 (691)
T ss_pred CCcEEEEECCCCCcccc--cceEEEeEEEeCHHHHHHHHH
Confidence 89999999999999999 999999999999999999866
No 18
>TIGR03705 poly_P_kin polyphosphate kinase 1. Members of this protein family are the enzyme polyphosphate kinase 1 (PPK1). This family is found in many prokaryotes and also in Dictyostelium. Sequences in the seed alignment were taken from prokaryotic consecutive two-gene pairs in which the other gene encodes an exopolyphosphatase. It synthesizes polyphosphate from the terminal phosphate of ATP but not GTP, in contrast to PPK2.
Probab=99.82 E-value=3.8e-19 Score=212.97 Aligned_cols=275 Identities=22% Similarity=0.255 Sum_probs=194.3
Q ss_pred ecHHHHHHHHHHHHHhccc-----EEEEeeecCCceeEEEcCCCCchhHHHHHHHHHHhhCCcEEEEEEcc--chhhhhh
Q 002219 369 VDGKAAFEAIASSIEDAKS-----EIFICGWWLCPELYLRRPFHNHASSRLDALLEAKAKQGVQIYILLYK--EVALALK 441 (952)
Q Consensus 369 vdG~~~f~al~~aI~~Ak~-----~I~I~~W~lsPe~Yl~rp~~d~~~~rL~~~L~~aA~rGVkVrILl~d--~~~~~l~ 441 (952)
.-.-+-|..+++.|++|.+ +|.| .+|.+.. ..+|.++|.+||++||+|+|+|.= ..+. .
T Consensus 335 h~PY~Sf~~v~~~i~~Aa~DP~V~~Ik~-------tlYr~~~-----~s~ii~aL~~Aa~~Gk~V~v~veLkArfde--~ 400 (672)
T TIGR03705 335 HHPYESFDPVVEFLRQAAEDPDVLAIKQ-------TLYRTSK-----DSPIIDALIEAAENGKEVTVVVELKARFDE--E 400 (672)
T ss_pred ECCccCHHHHHHHHHHHhcCCCceEEEE-------EEEEecC-----CcHHHHHHHHHHHcCCEEEEEEEehhhccc--h
Confidence 3344567888999999998 8999 5787752 488999999999999999999830 1111 1
Q ss_pred cchhhhHHHHhccCCCeEEEEcCCCcCCCcccccCcceEEEEeCC-------eEEEccccCCCCCcCCCCCCCCCCCCCc
Q 002219 442 INSVYSKRKLLSIHENVRVLRYPDHFASGVYLWSHHEKLVIVDYQ-------ICFIGGLDLCFGRYDTFEHKIGDNPPLI 514 (952)
Q Consensus 442 ~~s~~~k~~L~~l~~gI~V~r~P~~~~~~~~~~rhHrKivVIDg~-------vAFvGGiNL~~gRwDt~~H~l~D~~~~~ 514 (952)
.|-.|+ +.|.+ +|++|.. |...+..|+|+++||.+ .+++|.-|..
T Consensus 401 ~ni~wa-~~le~--aG~~viy-------g~~~~k~H~K~~li~r~~~~~~~~y~~igTgN~n------------------ 452 (672)
T TIGR03705 401 ANIRWA-RRLEE--AGVHVVY-------GVVGLKTHAKLALVVRREGGELRRYVHLGTGNYH------------------ 452 (672)
T ss_pred hhHHHH-HHHHH--cCCEEEE-------cCCCeeeeeEEEEEEEeeCCceEEEEEecCCCCC------------------
Confidence 233444 34543 8999864 22346899999999974 5777777763
Q ss_pred CCCCCCCCCCCCCCCCccccccccccCCCCCCCCeEEEEEE-EEChHHHHHHHHHHHHHHhhhcCCCCCCCCccccCCcc
Q 002219 515 WPGKDYYNPRESEPNSWEDTMRDELDRGKYPRMPWHDIHCA-LWGPPCRDVARHFVQRWNYAKRNKAPNEETIPLLMPQH 593 (952)
Q Consensus 515 ~~G~dY~n~~~~d~~~~~~~~~d~~dr~~~pr~pWhDv~~~-v~Gpaa~dl~~~F~qrWn~~~~~k~~~~~~~p~l~P~~ 593 (952)
+ ++. ..|+|+++. ..|..+.|+...|...|.+....+
T Consensus 453 --------~-------------------~ta-~~y~D~~l~t~~~~i~~d~~~~F~~l~~~~~~~~-------------- 490 (672)
T TIGR03705 453 --------P-------------------KTA-RLYTDLSLFTADPEIGRDVARVFNYLTGYSRPPK-------------- 490 (672)
T ss_pred --------C-------------------ccc-ccccceeEEEeChHHHHHHHHHHHHhhCCCcchh--------------
Confidence 0 111 369999999 778899999999998875321000
Q ss_pred ccccccccCCcchhhhcccccccccccccccccccccCccCCCCCCCCCCCccccCCCCCCcCCCCCccccccccccccc
Q 002219 594 QMVIPHYMGRSREVEVESKNVEDNSKSIKRQDSFTFRSSLQDIPLLLPQEPEVLDDSSRGLIPNGLDYTTTKSASFRYQK 673 (952)
Q Consensus 594 ~~~~~~y~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~p~l~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 673 (952)
+ ..+
T Consensus 491 ---------------------------------~---------~~l---------------------------------- 494 (672)
T TIGR03705 491 ---------------------------------F---------KHL---------------------------------- 494 (672)
T ss_pred ---------------------------------h---------HHH----------------------------------
Confidence 0 000
Q ss_pred ccccccccCCCCCCccCCCCCCCcccccccccccCCCCCCCCchhhhhcccCCccCCCCccCCCCCCCCceEEEeecCCc
Q 002219 674 AKIEPVVTDMPMKGFVDDRDSPHHHLKTSLDVMTLPGTKSSDIEWWETQERGDQVGSTDETGQVGPRASCRCQIIRSVSQ 753 (952)
Q Consensus 674 ~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vQilRS~~~ 753 (952)
-+
T Consensus 495 ---------------------------------------------------------------------------~~--- 496 (672)
T TIGR03705 495 ---------------------------------------------------------------------------LV--- 496 (672)
T ss_pred ---------------------------------------------------------------------------Hh---
Confidence 00
Q ss_pred ccCCCcccHHHHHHHHHHHHHhccC----eEEEEeeeeccCCCCChhHHHHHHHHHHHHHHHHHHcCCceEEEE--EecC
Q 002219 754 WSAGTSQLEESIHCAYCSLIEKAEH----FIYIENQFFISGLSGDEIIRNRVLESLYRRILRAYNEKKCFRVII--VIPL 827 (952)
Q Consensus 754 wS~G~~~~E~sI~~ayl~~I~~A~~----~IYIEnqyFis~~~~~~~v~n~I~~AL~~RI~~A~~~g~~vrV~I--vlPl 827 (952)
|+...+..+.+.+...|.+|++ +|+|.++| +++. .|.+||+ +|+++|++|+++| +..+
T Consensus 497 ---~P~~~~~~~~~~i~~ei~~Ak~g~~~~I~ik~n~-l~D~--------~ii~aL~----~As~aGV~V~LivRGiCcL 560 (672)
T TIGR03705 497 ---SPFTLRKRLLELIDREIENARAGKPARIIAKMNS-LVDP--------DLIDALY----EASQAGVKIDLIVRGICCL 560 (672)
T ss_pred ---CcchHHHHHHHHHHHHHHHHHcCCCCEEEEEcCC-CCCH--------HHHHHHH----HHHHCCCeEEEEEeccccc
Confidence 1223467888999999999999 99999999 5553 6888887 9999999998887 3344
Q ss_pred CCCCCCCCCCCCchhHHHHHHHHHHHHHhhHHHHHHHHHHhcCCCcccccccccccccccccCCCCcccccceeeeeEEE
Q 002219 828 LPGFQGGVDDGGAASVRAIMHWQYRTICRGQNSILHNLYALLGPKTHDYISFYGLRAYGRLFEDGPVATSQVYVHSKVMI 907 (952)
Q Consensus 828 ~pgf~g~~~d~~~~~~r~i~~~qy~ti~rg~~si~~~L~~~~Gv~~~~Yi~f~~lr~~~~~~~~g~~~te~iyvHSKlmI 907 (952)
.||.+|- +|. ++. .|++.++++ |++++.| .+|
T Consensus 561 ~pgipg~-sd~----i~v-------------~siv~r~Le--h~rIy~f-------------~~~--------------- 592 (672)
T TIGR03705 561 RPGVPGL-SEN----IRV-------------RSIVGRFLE--HSRIYYF-------------GNG--------------- 592 (672)
T ss_pred CCCCCCC-CCC----EEE-------------EEEhhHhhC--cCEEEEE-------------eCC---------------
Confidence 4443322 221 110 255666665 4554332 011
Q ss_pred EeCcEEEEecccCCcCccCCCCCcceEEEEEchhhHHHhhh
Q 002219 908 IDDSIALIGSANINDRSLLGSRDSEVSVGLYLFILRWELTD 948 (952)
Q Consensus 908 VDD~~~iIGSANin~RSm~G~rDsEi~v~i~d~~~~~~~~~ 948 (952)
||.+++|||||++.||| .++.|+++.|+|+.++.+|.+
T Consensus 593 -~d~~~~igSAn~m~Rnl--~~r~E~~~~i~d~~~~~~l~~ 630 (672)
T TIGR03705 593 -GEEKVYISSADWMTRNL--DRRVEVLFPIEDPTLKQRVLD 630 (672)
T ss_pred -CCcEEEEECCCCCCCcc--cceEEEEEEEcCHHHHHHHHH
Confidence 68899999999999999 999999999999999999965
No 19
>PHA02820 phospholipase-D-like protein; Provisional
Probab=99.66 E-value=9.6e-16 Score=176.93 Aligned_cols=156 Identities=15% Similarity=0.124 Sum_probs=113.4
Q ss_pred CCceEEEeecCCcccCCCcccHHHHHHHHHHHHHhccCeEEEEeeeeccCCCCChhHHHHHHHHHHHHHHHHHHcCCceE
Q 002219 741 ASCRCQIIRSVSQWSAGTSQLEESIHCAYCSLIEKAEHFIYIENQFFISGLSGDEIIRNRVLESLYRRILRAYNEKKCFR 820 (952)
Q Consensus 741 ~~~~vQilRS~~~wS~G~~~~E~sI~~ayl~~I~~A~~~IYIEnqyFis~~~~~~~v~n~I~~AL~~RI~~A~~~g~~vr 820 (952)
.+|+||++-|.|.-- +....-.|.+++|.++|.+|+++|+|+++||+++.........+|.+||. +|+++| |+
T Consensus 4 ~~~~~~~vesiP~~~-~~~~~~~~t~~~~~~lI~~Ak~~I~I~s~yf~~~d~~~~~~G~~i~~aL~----~aA~rG--V~ 76 (424)
T PHA02820 4 DNTIAVITETIPIGM-QFDKVYLSTFNFWREILSNTTKTLDISSFYWSLSDEVGTNFGTMILNEII----QLPKRG--VR 76 (424)
T ss_pred cccEEEEEEecCCCC-CCCCCCCCHHHHHHHHHHhhCcEEEEEeEEEecCccccchhHHHHHHHHH----HHHHCC--CE
Confidence 479999999998621 11122358999999999999999999999999753221233455666665 899999 55
Q ss_pred EEEEecCCCCCCCCCCCCCchhHHHHHHHHHHHHHhhHHHHHHHHHHhcCCCcccccccccccccccccCCCCcccccce
Q 002219 821 VIIVIPLLPGFQGGVDDGGAASVRAIMHWQYRTICRGQNSILHNLYALLGPKTHDYISFYGLRAYGRLFEDGPVATSQVY 900 (952)
Q Consensus 821 V~IvlPl~pgf~g~~~d~~~~~~r~i~~~qy~ti~rg~~si~~~L~~~~Gv~~~~Yi~f~~lr~~~~~~~~g~~~te~iy 900 (952)
|.|+++. .+ .. ...+.+|++ +|+++..|... .+ ....
T Consensus 77 VRIL~d~-~~----~~----------------------~~~~~~L~~-aGv~v~~~~~~----~~-----------~~~~ 113 (424)
T PHA02820 77 VRIAVNK-SN----KP----------------------LKDVELLQM-AGVEVRYIDIT----NI-----------LGGV 113 (424)
T ss_pred EEEEECC-CC----Cc----------------------hhhHHHHHh-CCCEEEEEecC----CC-----------Cccc
Confidence 5556772 22 10 122456777 89887654211 11 1347
Q ss_pred eeeeEEEEeCcEEEEecccCCcCccCCCCCcceEEEEEc-hhhHHHhhh
Q 002219 901 VHSKVMIIDDSIALIGSANINDRSLLGSRDSEVSVGLYL-FILRWELTD 948 (952)
Q Consensus 901 vHSKlmIVDD~~~iIGSANin~RSm~G~rDsEi~v~i~d-~~~~~~~~~ 948 (952)
+|+|+||||+++++|||+||++||+ ..+.|+++.+.+ +.++.+|..
T Consensus 114 ~HrK~~VIDg~~~~iGS~Nid~rsl--~~n~E~gv~i~~~g~~v~~L~~ 160 (424)
T PHA02820 114 LHTKFWISDNTHIYLGSANMDWRSL--TQVKELGIAIFNNSNLAADLTQ 160 (424)
T ss_pred ceeeEEEECCCEEEEeCCcCChhhh--hhCCceEEEEecchHHHHHHHH
Confidence 9999999999999999999999999 889999999885 788888764
No 20
>cd00138 PLDc Phospholipase D. Active site motifs; The PLD superfamily includes enzymes involved in signal transduction, lipid biosynthesis, endonucleases and open reading frames in pathogenic viruses and bacteria. PLD hydrolyzes the terminal phosphodiester bond of phospholipids to phosphatidic acid and a hydrophilic constituent. Phosphatidic acid is a compound that is heavily involved in signal transduction. The common features of the family members are that they can bind to a phosphodiester moiety, and that most of these enzymes are active as bi-lobed monomers or dimers.
Probab=99.64 E-value=2.5e-15 Score=152.06 Aligned_cols=157 Identities=26% Similarity=0.386 Sum_probs=116.8
Q ss_pred CCeEEEEecHHHHHHHHHHHHHhcccEEEEeeecCCceeEEEcCCCCchhHHHHHHHHHHhhCCcEEEEEEccchhhhhh
Q 002219 362 GSQAQWFVDGKAAFEAIASSIEDAKSEIFICGWWLCPELYLRRPFHNHASSRLDALLEAKAKQGVQIYILLYKEVALALK 441 (952)
Q Consensus 362 gn~v~~lvdG~~~f~al~~aI~~Ak~~I~I~~W~lsPe~Yl~rp~~d~~~~rL~~~L~~aA~rGVkVrILl~d~~~~~l~ 441 (952)
++..++..++.+++..++++|.+|+++|+|+.|+++|.. ......|.++|.+|+++||+|+||+++.......
T Consensus 10 ~~~~~~~~~~~~~~~~i~~~I~~A~~~I~i~~~~~~~~~-------~~~~~~l~~~L~~a~~rGv~V~il~~~~~~~~~~ 82 (176)
T cd00138 10 NNLDKKRVGGRSDLDALLEAISNAKKSIYIASFYLSPLI-------TEYGPVILDALLAAARRGVKVRILVDEWSNTDLK 82 (176)
T ss_pred ccccccCcCcchHHHHHHHHHHhhheEEEEEEeEecccc-------cccchHHHHHHHHHHHCCCEEEEEEcccccCCch
Confidence 455588889999999999999999999999765554422 1336789999999999999999998655432211
Q ss_pred cchhhhHHHHhcc-CCCeEEEEcCCCcCCCcccccCcceEEEEeCCeEEEccccCCCCCcCCCCCCCCCCCCCcCCCCCC
Q 002219 442 INSVYSKRKLLSI-HENVRVLRYPDHFASGVYLWSHHEKLVIVDYQICFIGGLDLCFGRYDTFEHKIGDNPPLIWPGKDY 520 (952)
Q Consensus 442 ~~s~~~k~~L~~l-~~gI~V~r~P~~~~~~~~~~rhHrKivVIDg~vAFvGGiNL~~gRwDt~~H~l~D~~~~~~~G~dY 520 (952)
....+. ..|... .+|+++..++... ....++|.|++|||++++++||.|+....|
T Consensus 83 ~~~~~~-~~l~~~~~~~i~~~~~~~~~---~~~~~~H~K~~iiD~~~~~vGS~N~~~~~~-------------------- 138 (176)
T cd00138 83 ISSAYL-DSLRALLDIGVRVFLIRTDK---TYGGVLHTKLVIVDDETAYIGSANLDGRSL-------------------- 138 (176)
T ss_pred HHHHHH-HHHHHhhcCceEEEEEcCCc---ccccceeeeEEEEcCCEEEEECCcCChhhh--------------------
Confidence 112222 233321 2478887665421 134689999999999999999999963221
Q ss_pred CCCCCCCCCCccccccccccCCCCCCCCeEEEEEEEECh--HHHHHHHHHHHHHHhh
Q 002219 521 YNPRESEPNSWEDTMRDELDRGKYPRMPWHDIHCALWGP--PCRDVARHFVQRWNYA 575 (952)
Q Consensus 521 ~n~~~~d~~~~~~~~~d~~dr~~~pr~pWhDv~~~v~Gp--aa~dl~~~F~qrWn~~ 575 (952)
..++|+.+.+.|| +|.++.+.|.+.|+..
T Consensus 139 --------------------------~~~~e~~~~~~~~~~~~~~~~~~f~~~w~~~ 169 (176)
T cd00138 139 --------------------------TLNSEVGVVIYDPASLAADLKASLERDWNST 169 (176)
T ss_pred --------------------------hhhcceEEEEeChHHHHHHHHHHHHHHHhcC
Confidence 1467999999999 6999999999999975
No 21
>cd00138 PLDc Phospholipase D. Active site motifs; The PLD superfamily includes enzymes involved in signal transduction, lipid biosynthesis, endonucleases and open reading frames in pathogenic viruses and bacteria. PLD hydrolyzes the terminal phosphodiester bond of phospholipids to phosphatidic acid and a hydrophilic constituent. Phosphatidic acid is a compound that is heavily involved in signal transduction. The common features of the family members are that they can bind to a phosphodiester moiety, and that most of these enzymes are active as bi-lobed monomers or dimers.
Probab=99.61 E-value=7.3e-15 Score=148.67 Aligned_cols=156 Identities=28% Similarity=0.264 Sum_probs=110.5
Q ss_pred EEEeecCCcccCCCcccHHHHHHHHHHHHHhccCeEEEEeeeeccCCCCChhHHHHHHHHHHHHHHHHHHcCCceEEEEE
Q 002219 745 CQIIRSVSQWSAGTSQLEESIHCAYCSLIEKAEHFIYIENQFFISGLSGDEIIRNRVLESLYRRILRAYNEKKCFRVIIV 824 (952)
Q Consensus 745 vQilRS~~~wS~G~~~~E~sI~~ayl~~I~~A~~~IYIEnqyFis~~~~~~~v~n~I~~AL~~RI~~A~~~g~~vrV~Iv 824 (952)
.|+++|.+.|..+....+..+.++++++|.+|++.|+|+++||.+.. ......|.++|. +|+++| ++|.|+
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~i~~~I~~A~~~I~i~~~~~~~~~---~~~~~~l~~~L~----~a~~rG--v~V~il 72 (176)
T cd00138 2 VQLGESPSNNLDKKRVGGRSDLDALLEAISNAKKSIYIASFYLSPLI---TEYGPVILDALL----AAARRG--VKVRIL 72 (176)
T ss_pred ceeccCCCccccccCcCcchHHHHHHHHHHhhheEEEEEEeEecccc---cccchHHHHHHH----HHHHCC--CEEEEE
Confidence 47888888887766667889999999999999999999999998631 001135666665 888888 556666
Q ss_pred ecCCCCCCCCCCCCCchhHHHHHHHHHHHHHhhHHHHHHHHHHhc--CCCcccccccccccccccccCCCCcccccceee
Q 002219 825 IPLLPGFQGGVDDGGAASVRAIMHWQYRTICRGQNSILHNLYALL--GPKTHDYISFYGLRAYGRLFEDGPVATSQVYVH 902 (952)
Q Consensus 825 lPl~pgf~g~~~d~~~~~~r~i~~~qy~ti~rg~~si~~~L~~~~--Gv~~~~Yi~f~~lr~~~~~~~~g~~~te~iyvH 902 (952)
+...+... . . ....++..|.+.. |+++.. +..... ....+|
T Consensus 73 ~~~~~~~~------~-~---------------~~~~~~~~l~~~~~~~i~~~~------~~~~~~---------~~~~~H 115 (176)
T cd00138 73 VDEWSNTD------L-K---------------ISSAYLDSLRALLDIGVRVFL------IRTDKT---------YGGVLH 115 (176)
T ss_pred EcccccCC------c-h---------------HHHHHHHHHHHhhcCceEEEE------EcCCcc---------ccccee
Confidence 77554311 0 0 0223455665521 333321 111100 135899
Q ss_pred eeEEEEeCcEEEEecccCCcCccCCCCCcceEEEEEchh-hHHHhhh
Q 002219 903 SKVMIIDDSIALIGSANINDRSLLGSRDSEVSVGLYLFI-LRWELTD 948 (952)
Q Consensus 903 SKlmIVDD~~~iIGSANin~RSm~G~rDsEi~v~i~d~~-~~~~~~~ 948 (952)
+|+||||++.+++||+|++.+++ ..|.|+++++.++. ++.++..
T Consensus 116 ~K~~iiD~~~~~vGS~N~~~~~~--~~~~e~~~~~~~~~~~~~~~~~ 160 (176)
T cd00138 116 TKLVIVDDETAYIGSANLDGRSL--TLNSEVGVVIYDPASLAADLKA 160 (176)
T ss_pred eeEEEEcCCEEEEECCcCChhhh--hhhcceEEEEeChHHHHHHHHH
Confidence 99999999999999999999999 79999999999998 7776653
No 22
>PRK13912 nuclease NucT; Provisional
Probab=99.48 E-value=3e-13 Score=139.01 Aligned_cols=134 Identities=22% Similarity=0.193 Sum_probs=90.7
Q ss_pred HHHHHHHHHHHHhccCeEEEEeeeeccCCCCChhHHHHHHHHHHHHHHHHHHcCCceEEEEEecCCCCCCCCCCCCCchh
Q 002219 763 ESIHCAYCSLIEKAEHFIYIENQFFISGLSGDEIIRNRVLESLYRRILRAYNEKKCFRVIIVIPLLPGFQGGVDDGGAAS 842 (952)
Q Consensus 763 ~sI~~ayl~~I~~A~~~IYIEnqyFis~~~~~~~v~n~I~~AL~~RI~~A~~~g~~vrV~IvlPl~pgf~g~~~d~~~~~ 842 (952)
..+...++++|.+|++.|+|+. |+++.. .|.+||. .|++|| |+|.|+++.... .. +..
T Consensus 32 ~~~~~~l~~~I~~Ak~sI~i~~-Y~~~~~--------~i~~aL~----~Aa~RG--V~VrIlld~~~~----~~--~~~- 89 (177)
T PRK13912 32 KDALNKLVSLISNARSSIKIAI-YSFTHK--------DIAKALK----SAAKRG--VKISIIYDYESN----HN--NDQ- 89 (177)
T ss_pred HHHHHHHHHHHHhcccEEEEEE-EEEchH--------HHHHHHH----HHHHCC--CEEEEEEeCccc----cC--cch-
Confidence 4678899999999999999996 776652 5777775 999999 555556774332 10 000
Q ss_pred HHHHHHHHHHHHHhhHHHHHHHHHHhcCCCcccccccccccccccccCCCCcccccceeeeeEEEEeCcEEEEecccCCc
Q 002219 843 VRAIMHWQYRTICRGQNSILHNLYALLGPKTHDYISFYGLRAYGRLFEDGPVATSQVYVHSKVMIIDDSIALIGSANIND 922 (952)
Q Consensus 843 ~r~i~~~qy~ti~rg~~si~~~L~~~~Gv~~~~Yi~f~~lr~~~~~~~~g~~~te~iyvHSKlmIVDD~~~iIGSANin~ 922 (952)
+....|.+..+++... +.+++.. . -+...++|+|+||||++++++||+|++.
T Consensus 90 -----------------~~~~~l~~~~~~~~~~---~~~~~~~-----~---~~~~~~~H~K~~viD~~~~~iGS~N~t~ 141 (177)
T PRK13912 90 -----------------STIGYLDKYPNIKVCL---LKGLKAK-----N---GKYYGIMHQKVAIIDDKIVVLGSANWSK 141 (177)
T ss_pred -----------------hHHHHHHhCCCceEEE---ecCcccc-----C---cccccccceeEEEEcCCEEEEeCCCCCh
Confidence 0011122211222111 1111100 0 0123479999999999999999999999
Q ss_pred CccCCCCCcceEEEEEchhhHHHhhh
Q 002219 923 RSLLGSRDSEVSVGLYLFILRWELTD 948 (952)
Q Consensus 923 RSm~G~rDsEi~v~i~d~~~~~~~~~ 948 (952)
+|+ ..|.|+.+++.||+++.++.+
T Consensus 142 ~s~--~~N~E~~lii~d~~~~~~~~~ 165 (177)
T PRK13912 142 NAF--ENNYEVLLITDDTETILKAKE 165 (177)
T ss_pred hHh--ccCCceEEEECCHHHHHHHHH
Confidence 999 899999999999999999875
No 23
>PRK12452 cardiolipin synthetase; Reviewed
Probab=99.46 E-value=2.6e-13 Score=160.32 Aligned_cols=147 Identities=20% Similarity=0.312 Sum_probs=111.0
Q ss_pred CCeEEEEecHH-----HHHHHHHHHHHhcccEEEEeeecCCceeEEEcCCCCchhHHHHHHHHHHhhCCcEEEEEEccch
Q 002219 362 GSQAQWFVDGK-----AAFEAIASSIEDAKSEIFICGWWLCPELYLRRPFHNHASSRLDALLEAKAKQGVQIYILLYKEV 436 (952)
Q Consensus 362 gn~v~~lvdG~-----~~f~al~~aI~~Ak~~I~I~~W~lsPe~Yl~rp~~d~~~~rL~~~L~~aA~rGVkVrILl~d~~ 436 (952)
...++++.+|+ ..+.+++++|.+||++|+|++ .|+.+ +..+.++|+.||+|||+|+||+....
T Consensus 328 ~~~~q~~~sgp~~~~~~i~~~~l~~I~~A~~~I~I~t------pYf~p------d~~l~~aL~~Aa~rGV~Vrii~p~~~ 395 (509)
T PRK12452 328 EGAVQIVASGPSSDDKSIRNTLLAVMGSAKKSIWIAT------PYFIP------DQETLTLLRLSAISGIDVRILYPGKS 395 (509)
T ss_pred CeEEEEEeCCCCchhHHHHHHHHHHHHHhhhEEEEEC------CccCC------CHHHHHHHHHHHHcCCEEEEEcCCCC
Confidence 45789999987 789999999999999999963 45554 36899999999999999999985422
Q ss_pred hhhhh--cchhhhHHHHhccCCCeEEEEcCCCcCCCcccccCcceEEEEeCCeEEEccccCCCCCcCCCCCCCCCCCCCc
Q 002219 437 ALALK--INSVYSKRKLLSIHENVRVLRYPDHFASGVYLWSHHEKLVIVDYQICFIGGLDLCFGRYDTFEHKIGDNPPLI 514 (952)
Q Consensus 437 ~~~l~--~~s~~~k~~L~~l~~gI~V~r~P~~~~~~~~~~rhHrKivVIDg~vAFvGGiNL~~gRwDt~~H~l~D~~~~~ 514 (952)
..... ....|. ..|. .+||+|+.|... ..|+|++|||+++|++||+|+....+
T Consensus 396 D~~~~~~a~~~~~-~~L~--~aGv~I~~y~~~--------~lHaK~~ivD~~~a~vGS~Nld~RS~-------------- 450 (509)
T PRK12452 396 DSIISDQASQSYF-TPLL--KAGASIYSYKDG--------FMHAKIVLVDDKIATIGTANMDVRSF-------------- 450 (509)
T ss_pred ChHHHHHHHHHHH-HHHH--HcCCEEEEecCC--------CeeeeEEEECCCEEEEeCcccCHhHh--------------
Confidence 21110 011111 3344 379999887533 37999999999999999999941111
Q ss_pred CCCCCCCCCCCCCCCCccccccccccCCCCCCCCeEEEEEEEEChHHHHHHHHHHHHHHhhh
Q 002219 515 WPGKDYYNPRESEPNSWEDTMRDELDRGKYPRMPWHDIHCALWGPPCRDVARHFVQRWNYAK 576 (952)
Q Consensus 515 ~~G~dY~n~~~~d~~~~~~~~~d~~dr~~~pr~pWhDv~~~v~Gpaa~dl~~~F~qrWn~~~ 576 (952)
...|.+.++...|+.|.++...|.++|..+.
T Consensus 451 -------------------------------~~n~E~~~~i~~~~~~~~l~~~f~~d~~~s~ 481 (509)
T PRK12452 451 -------------------------------ELNYEIISVLYESETVHDIKRDFEDDFKHST 481 (509)
T ss_pred -------------------------------hhhhhccEEEECHHHHHHHHHHHHHHHHhCe
Confidence 1246677888889999999999999998764
No 24
>PRK13912 nuclease NucT; Provisional
Probab=99.45 E-value=1.5e-12 Score=133.82 Aligned_cols=143 Identities=21% Similarity=0.232 Sum_probs=99.8
Q ss_pred cHHHHHHHHHHHHHhcccEEEEeeecCCceeEEEcCCCCchhHHHHHHHHHHhhCCcEEEEEEccchhhhhhcchhhhHH
Q 002219 370 DGKAAFEAIASSIEDAKSEIFICGWWLCPELYLRRPFHNHASSRLDALLEAKAKQGVQIYILLYKEVALALKINSVYSKR 449 (952)
Q Consensus 370 dG~~~f~al~~aI~~Ak~~I~I~~W~lsPe~Yl~rp~~d~~~~rL~~~L~~aA~rGVkVrILl~d~~~~~l~~~s~~~k~ 449 (952)
++.+.+..++++|++|+++|+| .+|.+. ...|.++|.+|++|||+|+||+ |..+.. +.....-
T Consensus 30 ~~~~~~~~l~~~I~~Ak~sI~i-------~~Y~~~------~~~i~~aL~~Aa~RGV~VrIll-d~~~~~---~~~~~~~ 92 (177)
T PRK13912 30 EQKDALNKLVSLISNARSSIKI-------AIYSFT------HKDIAKALKSAAKRGVKISIIY-DYESNH---NNDQSTI 92 (177)
T ss_pred ChHHHHHHHHHHHHhcccEEEE-------EEEEEc------hHHHHHHHHHHHHCCCEEEEEE-eCcccc---CcchhHH
Confidence 4567899999999999999999 578776 3679999999999999999997 443221 1111101
Q ss_pred HHhccCCCeEEEEc-CCCcCCCcccccCcceEEEEeCCeEEEccccCCCCCcCCCCCCCCCCCCCcCCCCCCCCCCCCCC
Q 002219 450 KLLSIHENVRVLRY-PDHFASGVYLWSHHEKLVIVDYQICFIGGLDLCFGRYDTFEHKIGDNPPLIWPGKDYYNPRESEP 528 (952)
Q Consensus 450 ~L~~l~~gI~V~r~-P~~~~~~~~~~rhHrKivVIDg~vAFvGGiNL~~gRwDt~~H~l~D~~~~~~~G~dY~n~~~~d~ 528 (952)
......+|+++..+ +...........+|.|++|||++++++||.|+....+.
T Consensus 93 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~H~K~~viD~~~~~iGS~N~t~~s~~--------------------------- 145 (177)
T PRK13912 93 GYLDKYPNIKVCLLKGLKAKNGKYYGIMHQKVAIIDDKIVVLGSANWSKNAFE--------------------------- 145 (177)
T ss_pred HHHHhCCCceEEEecCccccCcccccccceeEEEEcCCEEEEeCCCCChhHhc---------------------------
Confidence 11222467777654 22211122345689999999999999999999522110
Q ss_pred CCccccccccccCCCCCCCCeEEEEEEEEChH-HHHHHHHHHHHHHhh
Q 002219 529 NSWEDTMRDELDRGKYPRMPWHDIHCALWGPP-CRDVARHFVQRWNYA 575 (952)
Q Consensus 529 ~~~~~~~~d~~dr~~~pr~pWhDv~~~v~Gpa-a~dl~~~F~qrWn~~ 575 (952)
--+++.+.+..|. +.++.+.|.+.|...
T Consensus 146 -------------------~N~E~~lii~d~~~~~~~~~~F~~~~~~s 174 (177)
T PRK13912 146 -------------------NNYEVLLITDDTETILKAKEYFQKMLGSC 174 (177)
T ss_pred -------------------cCCceEEEECCHHHHHHHHHHHHHHHHhc
Confidence 0135678888876 688999999999765
No 25
>PHA03003 palmytilated EEV membrane glycoprotein; Provisional
Probab=99.43 E-value=9.2e-13 Score=150.06 Aligned_cols=142 Identities=16% Similarity=0.188 Sum_probs=91.5
Q ss_pred HHHHHHHHHhcccEEEEeeecCCceeEEEcCC-CCchhHHHHHHHHHHh-hCCcEEEEEEccchhhhhhcchhhhHHHHh
Q 002219 375 FEAIASSIEDAKSEIFICGWWLCPELYLRRPF-HNHASSRLDALLEAKA-KQGVQIYILLYKEVALALKINSVYSKRKLL 452 (952)
Q Consensus 375 f~al~~aI~~Ak~~I~I~~W~lsPe~Yl~rp~-~d~~~~rL~~~L~~aA-~rGVkVrILl~d~~~~~l~~~s~~~k~~L~ 452 (952)
.++++++|.+||++|+|+.+-|.|.. ..+ ....+..|.++|.+|| +|||+||||+. ..+..-.....+. +.|.
T Consensus 218 ~~~ll~~I~~Ak~~I~I~t~yf~P~~---~~d~~~~~~~~i~~AL~~AAa~RGV~VRILv~-~~~~~~~~~~~~~-~~L~ 292 (369)
T PHA03003 218 ADVVLHKIKSAKKSIDLELLSLVPVI---REDDKTTYWPDIYNALIRAAINRGVKVRLLVG-SWKKNDVYSMASV-KSLQ 292 (369)
T ss_pred HHHHHHHHHHHhhEEEEEEeccccEE---eeCCCCccHHHHHHHHHHHHHcCCCEEEEEEe-cCCcCCchhhhHH-HHHH
Confidence 48999999999999999754333321 110 1123568999999885 99999999974 4321101112222 3454
Q ss_pred ccC--CCeEEEEcCCCcCCCcccccCcceEEEEeCCeEEEccccCCCCCcCCCCCCCCCCCCCcCCCCCCCCCCCCCCCC
Q 002219 453 SIH--ENVRVLRYPDHFASGVYLWSHHEKLVIVDYQICFIGGLDLCFGRYDTFEHKIGDNPPLIWPGKDYYNPRESEPNS 530 (952)
Q Consensus 453 ~l~--~gI~V~r~P~~~~~~~~~~rhHrKivVIDg~vAFvGGiNL~~gRwDt~~H~l~D~~~~~~~G~dY~n~~~~d~~~ 530 (952)
+.. .++.|..|. ..+|+|++|||+++||+||+|+....+. .
T Consensus 293 ~~G~~~~i~vri~~---------~~~H~K~~VVD~~~a~iGS~N~d~~s~~--------------------~-------- 335 (369)
T PHA03003 293 ALCVGNDLSVKVFR---------IPNNTKLLIVDDEFAHITSANFDGTHYL--------------------H-------- 335 (369)
T ss_pred HcCCCCCceEeeec---------CCCCceEEEEcCCEEEEeccccCchhhc--------------------c--------
Confidence 321 123333221 1279999999999999999999522111 0
Q ss_pred ccccccccccCCCCCCCCeEEEEEEEEChHHHHHHHHHHHHHHhh
Q 002219 531 WEDTMRDELDRGKYPRMPWHDIHCALWGPPCRDVARHFVQRWNYA 575 (952)
Q Consensus 531 ~~~~~~d~~dr~~~pr~pWhDv~~~v~Gpaa~dl~~~F~qrWn~~ 575 (952)
..|.++ ..+.|++|.+++..|.++|+..
T Consensus 336 ----------------~~e~~~-~~~~~~~a~~l~~~F~~dW~~~ 363 (369)
T PHA03003 336 ----------------HAFVSF-NTIDKELVKELSAIFERDWTSS 363 (369)
T ss_pred ----------------CCCeEE-ecCChhHHHHHHHHHHHHhCCc
Confidence 123332 2467999999999999999854
No 26
>PF13091 PLDc_2: PLD-like domain; PDB: 2ZE4_A 2ZE9_A 1BYS_A 1BYR_A 1V0T_A 1V0U_A 1V0V_A 1V0S_A 1V0R_A 1V0W_A ....
Probab=99.31 E-value=1.4e-11 Score=117.77 Aligned_cols=119 Identities=29% Similarity=0.353 Sum_probs=77.5
Q ss_pred HHHHHhccCeEEEEeeeeccCCCCChhHHHHHHHHHHHHHHHHHHcCCceEEEEEecCCCCCCCCCCCCCchhHHHHHHH
Q 002219 770 CSLIEKAEHFIYIENQFFISGLSGDEIIRNRVLESLYRRILRAYNEKKCFRVIIVIPLLPGFQGGVDDGGAASVRAIMHW 849 (952)
Q Consensus 770 l~~I~~A~~~IYIEnqyFis~~~~~~~v~n~I~~AL~~RI~~A~~~g~~vrV~IvlPl~pgf~g~~~d~~~~~~r~i~~~ 849 (952)
+++|.+|++.|+|..+||... .|.++|. .++++|++++++ +...++ +.+.... .
T Consensus 2 ~~~i~~A~~~i~i~~~~~~~~---------~i~~~l~----~~~~~gv~v~ii--~~~~~~------~~~~~~~-~---- 55 (126)
T PF13091_consen 2 IDLIKSAQKSIWIASPYITDP---------DIIKALL----DAAKRGVKVRII--VDSNQD------DSEAINL-A---- 55 (126)
T ss_dssp HHHHHT-SSEEEEEESSS-SC---------HHHHHHH----HHHHTT-EEEEE--EECGGG------HHCCCSH-H----
T ss_pred HHHHhccCCEEEEEEEecCcH---------HHHHHHH----HHHHCCCeEEEE--ECCCcc------ccchhhh-H----
Confidence 689999999999999998332 4666665 788899555554 553221 0000000 0
Q ss_pred HHHHHHhhHHHHHHHHHHhcCCCcccccccccccccccccCCCCcccccceeeeeEEEEeCcEEEEecccCCcCccCCCC
Q 002219 850 QYRTICRGQNSILHNLYALLGPKTHDYISFYGLRAYGRLFEDGPVATSQVYVHSKVMIIDDSIALIGSANINDRSLLGSR 929 (952)
Q Consensus 850 qy~ti~rg~~si~~~L~~~~Gv~~~~Yi~f~~lr~~~~~~~~g~~~te~iyvHSKlmIVDD~~~iIGSANin~RSm~G~r 929 (952)
....+..+.+..|+++. .++|+|++|+||+++++||+|++.+|+ .+
T Consensus 56 --------~~~~~~~~~~~~~i~v~------------------------~~~H~K~~i~d~~~~iiGS~N~t~~~~--~~ 101 (126)
T PF13091_consen 56 --------SLKELRELLKNAGIEVR------------------------NRLHAKFYIIDDKVAIIGSANLTSSSF--RR 101 (126)
T ss_dssp --------HHHHHHHHHHHTTHCEE------------------------S-B--EEEEETTTEEEEES--CSCCCS--CT
T ss_pred --------HHHHHHhhhccceEEEe------------------------cCCCcceEEecCccEEEcCCCCCcchh--cC
Confidence 12233444222554432 279999999999999999999999999 89
Q ss_pred CcceEEEEEchhhHHHhhh
Q 002219 930 DSEVSVGLYLFILRWELTD 948 (952)
Q Consensus 930 DsEi~v~i~d~~~~~~~~~ 948 (952)
|.|+++.+.++.++.++.+
T Consensus 102 n~E~~~~~~~~~~~~~~~~ 120 (126)
T PF13091_consen 102 NYELGVIIDDPELVKELIR 120 (126)
T ss_dssp SEEEEEEEECHHHHHHHHH
T ss_pred CcceEEEEECHHHHHHHHH
Confidence 9999999999998888765
No 27
>KOG3603 consensus Predicted phospholipase D [General function prediction only]
Probab=99.21 E-value=6.5e-09 Score=117.04 Aligned_cols=147 Identities=20% Similarity=0.199 Sum_probs=92.8
Q ss_pred HHHHHHHHHHhcccEEEEee--ecCC-ceeEEEcCCCCchhHHHHHHHHHHhhCCcEEEEEEccchhhhhhcchhhhHHH
Q 002219 374 AFEAIASSIEDAKSEIFICG--WWLC-PELYLRRPFHNHASSRLDALLEAKAKQGVQIYILLYKEVALALKINSVYSKRK 450 (952)
Q Consensus 374 ~f~al~~aI~~Ak~~I~I~~--W~ls-Pe~Yl~rp~~d~~~~rL~~~L~~aA~rGVkVrILl~d~~~~~l~~~s~~~k~~ 450 (952)
.+++-++.|+.|+++++|+. |-+. +++|+-.. ....++.+...|.+++.+||.||+..--..+.. .+... ..
T Consensus 73 T~eaW~~Ll~sA~~eldIas~ywsL~~~d~~~~ds-St~~G~~vy~~L~~~~~~gIsiriA~~~p~~~~--~~~d~--~~ 147 (456)
T KOG3603|consen 73 TKEAWLELLSTAQEELDIASFYWSLTGKDTGVVDS-STQYGEQVYNTLLALAKSGVKIRIAQSYPSGGP--PNADL--QV 147 (456)
T ss_pred HHHHHHHHhhccceEEEEEEEeeccccceeccCCC-cchHHHHHHHHHHHhccCCeEEEEEeecCCCCC--CcccH--HH
Confidence 34888999999999999963 3332 12222111 123688999999999999999999753332211 11111 22
Q ss_pred HhccCCC-eEEEEcCCCcCCCcccccCcceEEEEeCCeEEEccccCCCCCcCCCCCCCCCCCCCcCCCCCCCCCCCCCCC
Q 002219 451 LLSIHEN-VRVLRYPDHFASGVYLWSHHEKLVIVDYQICFIGGLDLCFGRYDTFEHKIGDNPPLIWPGKDYYNPRESEPN 529 (952)
Q Consensus 451 L~~l~~g-I~V~r~P~~~~~~~~~~rhHrKivVIDg~vAFvGGiNL~~gRwDt~~H~l~D~~~~~~~G~dY~n~~~~d~~ 529 (952)
|.. .| ++|..-+.+-..+ -.-.|-|..|||++--|+||.|+.+.
T Consensus 148 Le~--~Gaa~vr~id~~~l~g--~GvlHtKf~vvD~khfylGSaNfDWr------------------------------- 192 (456)
T KOG3603|consen 148 LES--LGLAQVRSIDMNRLTG--GGVLHTKFWVVDIKHFYLGSANFDWR------------------------------- 192 (456)
T ss_pred HHh--CCCceEEeeccccccc--CceEEEEEEEEecceEEEeccccchh-------------------------------
Confidence 322 34 5655433221111 23589999999999999999999411
Q ss_pred CccccccccccCCCCCCCCeEEEEEEEEC--hHHHHHHHHHHHHHHhh
Q 002219 530 SWEDTMRDELDRGKYPRMPWHDIHCALWG--PPCRDVARHFVQRWNYA 575 (952)
Q Consensus 530 ~~~~~~~d~~dr~~~pr~pWhDv~~~v~G--paa~dl~~~F~qrWn~~ 575 (952)
++ + .-..+++.++- -.|.||...|.+.|..-
T Consensus 193 Sl------------T---qvkElGv~v~NCpclakDL~kiFe~yW~lg 225 (456)
T KOG3603|consen 193 SL------------T---QVKELGVVVRNCPCLAKDLKKIFERYWYLG 225 (456)
T ss_pred hc------------c---ceeEeeeEEecChhHHHHHHHHHHHHhcCC
Confidence 00 0 11245666653 36999999999999754
No 28
>PRK01642 cls cardiolipin synthetase; Reviewed
Probab=99.20 E-value=9.6e-11 Score=138.08 Aligned_cols=146 Identities=21% Similarity=0.320 Sum_probs=106.8
Q ss_pred CCeEEEEecHHH-----HHHHHHHHHHhcccEEEEeeecCCceeEEEcCCCCchhHHHHHHHHHHhhCCcEEEEEEccch
Q 002219 362 GSQAQWFVDGKA-----AFEAIASSIEDAKSEIFICGWWLCPELYLRRPFHNHASSRLDALLEAKAKQGVQIYILLYKEV 436 (952)
Q Consensus 362 gn~v~~lvdG~~-----~f~al~~aI~~Ak~~I~I~~W~lsPe~Yl~rp~~d~~~~rL~~~L~~aA~rGVkVrILl~d~~ 436 (952)
+..++++.+|++ ....++++|.+||++|+|++ .|+.+ ...+.++|+.||+|||+|+|++.+..
T Consensus 302 ~~~~qi~~sgP~~~~~~~~~~~~~~I~~A~~~I~I~t------pYfip------~~~i~~aL~~Aa~rGV~Vril~p~~~ 369 (483)
T PRK01642 302 GHTVQVIASGPGDPEETIHQFLLTAIYSARERLWITT------PYFVP------DEDLLAALKTAALRGVDVRIIIPSKN 369 (483)
T ss_pred CceEEEEeCCCCChhhHHHHHHHHHHHHhccEEEEEc------CCcCC------CHHHHHHHHHHHHcCCEEEEEeCCCC
Confidence 457888887763 66788999999999999964 45554 46899999999999999999986533
Q ss_pred hhhh-hc-chhhhHHHHhccCCCeEEEEcCCCcCCCcccccCcceEEEEeCCeEEEccccCCCCCcCCCCCCCCCCCCCc
Q 002219 437 ALAL-KI-NSVYSKRKLLSIHENVRVLRYPDHFASGVYLWSHHEKLVIVDYQICFIGGLDLCFGRYDTFEHKIGDNPPLI 514 (952)
Q Consensus 437 ~~~l-~~-~s~~~k~~L~~l~~gI~V~r~P~~~~~~~~~~rhHrKivVIDg~vAFvGGiNL~~gRwDt~~H~l~D~~~~~ 514 (952)
...+ .. ...|. ..|. .+||+++.|... ..|.|++|||+++|++|+.|+....+
T Consensus 370 d~~~~~~~~~~~~-~~L~--~~Gv~I~~y~~~--------~~HaK~~ivD~~~~~vGS~N~d~rS~-------------- 424 (483)
T PRK01642 370 DSLLVFWASRAFF-TELL--EAGVKIYRYEGG--------LLHTKSVLVDDELALVGTVNLDMRSF-------------- 424 (483)
T ss_pred CcHHHHHHHHHHH-HHHH--HcCCEEEEeCCC--------ceEeEEEEECCCEEEeeCCcCCHhHH--------------
Confidence 2211 00 11111 3343 379999888533 26999999999999999999941111
Q ss_pred CCCCCCCCCCCCCCCCccccccccccCCCCCCCCeEEEEEEEEChH-HHHHHHHHHHHHHhhh
Q 002219 515 WPGKDYYNPRESEPNSWEDTMRDELDRGKYPRMPWHDIHCALWGPP-CRDVARHFVQRWNYAK 576 (952)
Q Consensus 515 ~~G~dY~n~~~~d~~~~~~~~~d~~dr~~~pr~pWhDv~~~v~Gpa-a~dl~~~F~qrWn~~~ 576 (952)
+ --+++.+.|.+|. +.++.+.|.++|..+.
T Consensus 425 -----~---------------------------~N~E~~~~i~d~~~~~~l~~~f~~d~~~s~ 455 (483)
T PRK01642 425 -----W---------------------------LNFEITLVIDDTGFAADLAAMQEDYFARSR 455 (483)
T ss_pred -----h---------------------------hhhcceEEEECHHHHHHHHHHHHHHHHhCe
Confidence 0 1136788999985 8899999999997653
No 29
>PF13091 PLDc_2: PLD-like domain; PDB: 2ZE4_A 2ZE9_A 1BYS_A 1BYR_A 1V0T_A 1V0U_A 1V0V_A 1V0S_A 1V0R_A 1V0W_A ....
Probab=99.18 E-value=3.1e-10 Score=108.53 Aligned_cols=123 Identities=20% Similarity=0.343 Sum_probs=81.1
Q ss_pred HHHHHHhcccEEEEeeecCCceeEEEcCCCCchhHHHHHHHHHHhhCCcEEEEEEccchhhhhhcchhhhHHHHhcc--C
Q 002219 378 IASSIEDAKSEIFICGWWLCPELYLRRPFHNHASSRLDALLEAKAKQGVQIYILLYKEVALALKINSVYSKRKLLSI--H 455 (952)
Q Consensus 378 l~~aI~~Ak~~I~I~~W~lsPe~Yl~rp~~d~~~~rL~~~L~~aA~rGVkVrILl~d~~~~~l~~~s~~~k~~L~~l--~ 455 (952)
|.++|.+|+++|+|+.+++ . ...|.++|..++++||+|+|++.+..+.. ..........+.++ .
T Consensus 1 l~~~i~~A~~~i~i~~~~~-------~------~~~i~~~l~~~~~~gv~v~ii~~~~~~~~-~~~~~~~~~~~~~~~~~ 66 (126)
T PF13091_consen 1 LIDLIKSAQKSIWIASPYI-------T------DPDIIKALLDAAKRGVKVRIIVDSNQDDS-EAINLASLKELRELLKN 66 (126)
T ss_dssp HHHHHHT-SSEEEEEESSS--------------SCHHHHHHHHHHHTT-EEEEEEECGGGHH-CCCSHHHHHHHHHHHHH
T ss_pred CHHHHhccCCEEEEEEEec-------C------cHHHHHHHHHHHHCCCeEEEEECCCcccc-chhhhHHHHHHHhhhcc
Confidence 5789999999999976444 1 35578888889999999999985533211 01011111222221 3
Q ss_pred CCeEEEEcCCCcCCCcccccCcceEEEEeCCeEEEccccCCCCCcCCCCCCCCCCCCCcCCCCCCCCCCCCCCCCccccc
Q 002219 456 ENVRVLRYPDHFASGVYLWSHHEKLVIVDYQICFIGGLDLCFGRYDTFEHKIGDNPPLIWPGKDYYNPRESEPNSWEDTM 535 (952)
Q Consensus 456 ~gI~V~r~P~~~~~~~~~~rhHrKivVIDg~vAFvGGiNL~~gRwDt~~H~l~D~~~~~~~G~dY~n~~~~d~~~~~~~~ 535 (952)
.|++|. ...|.|++|||++++++||.|+....|
T Consensus 67 ~~i~v~------------~~~H~K~~i~d~~~~iiGS~N~t~~~~----------------------------------- 99 (126)
T PF13091_consen 67 AGIEVR------------NRLHAKFYIIDDKVAIIGSANLTSSSF----------------------------------- 99 (126)
T ss_dssp TTHCEE------------S-B--EEEEETTTEEEEES--CSCCCS-----------------------------------
T ss_pred ceEEEe------------cCCCcceEEecCccEEEcCCCCCcchh-----------------------------------
Confidence 677775 257999999999999999999962221
Q ss_pred cccccCCCCCCCCeEEEEEEEEChH-HHHHHHHHHHHH
Q 002219 536 RDELDRGKYPRMPWHDIHCALWGPP-CRDVARHFVQRW 572 (952)
Q Consensus 536 ~d~~dr~~~pr~pWhDv~~~v~Gpa-a~dl~~~F~qrW 572 (952)
...++..+.+.+|. +.++.+.|.+.|
T Consensus 100 -----------~~n~E~~~~~~~~~~~~~~~~~F~~~W 126 (126)
T PF13091_consen 100 -----------RRNYELGVIIDDPELVKELIREFDQMW 126 (126)
T ss_dssp -----------CTSEEEEEEEECHHHHHHHHHHTHH-H
T ss_pred -----------cCCcceEEEEECHHHHHHHHHHHhccC
Confidence 12468999999997 999999999989
No 30
>PRK11263 cardiolipin synthase 2; Provisional
Probab=99.11 E-value=6.9e-10 Score=128.20 Aligned_cols=142 Identities=17% Similarity=0.221 Sum_probs=102.1
Q ss_pred eEEEEecH-----HHHHHHHHHHHHhcccEEEEeeecCCceeEEEcCCCCchhHHHHHHHHHHhhCCcEEEEEEccchhh
Q 002219 364 QAQWFVDG-----KAAFEAIASSIEDAKSEIFICGWWLCPELYLRRPFHNHASSRLDALLEAKAKQGVQIYILLYKEVAL 438 (952)
Q Consensus 364 ~v~~lvdG-----~~~f~al~~aI~~Ak~~I~I~~W~lsPe~Yl~rp~~d~~~~rL~~~L~~aA~rGVkVrILl~d~~~~ 438 (952)
.+.+..+| .+....++++|.+|+++|+|++ .|+++ +..|.++|+.||+|||+|+||+......
T Consensus 192 ~~~~v~~~p~~~~~~i~~~~~~~i~~A~~~I~I~t------pYf~p------~~~l~~aL~~Aa~RGV~V~ii~~~~~d~ 259 (411)
T PRK11263 192 QALLVWRDNEEHRDDIERHYLKALRQARREVIIAN------AYFFP------GYRLLRALRNAARRGVRVRLILQGEPDM 259 (411)
T ss_pred EEEEEECCCcchHHHHHHHHHHHHHHhceEEEEEe------cCcCC------CHHHHHHHHHHHHCCCEEEEEeCCCCCc
Confidence 56666654 3567889999999999999974 56655 4789999999999999999998643322
Q ss_pred hh-hcchhhhHHHHhccCCCeEEEEcCCCcCCCcccccCcceEEEEeCCeEEEccccCCCCCcCCCCCCCCCCCCCcCCC
Q 002219 439 AL-KINSVYSKRKLLSIHENVRVLRYPDHFASGVYLWSHHEKLVIVDYQICFIGGLDLCFGRYDTFEHKIGDNPPLIWPG 517 (952)
Q Consensus 439 ~l-~~~s~~~k~~L~~l~~gI~V~r~P~~~~~~~~~~rhHrKivVIDg~vAFvGGiNL~~gRwDt~~H~l~D~~~~~~~G 517 (952)
.+ ...+.+....|+ .+||+|+.|... ..|.|++|||+++++|||.||..--+
T Consensus 260 ~~~~~a~~~~~~~Ll--~~Gv~I~~y~~~--------~lHaK~~viD~~~~~vGS~Nld~rS~----------------- 312 (411)
T PRK11263 260 PIVRVGARLLYNYLL--KGGVQIYEYCRR--------PLHGKVALMDDHWATVGSSNLDPLSL----------------- 312 (411)
T ss_pred HHHHHHHHHHHHHHH--HCCCEEEEecCC--------CceeEEEEECCCEEEEeCCcCCHHHh-----------------
Confidence 11 111111113444 379999877532 37999999999999999999941100
Q ss_pred CCCCCCCCCCCCCccccccccccCCCCCCCCeEEEEEEEEChH-HHHHHHHHHHHHH
Q 002219 518 KDYYNPRESEPNSWEDTMRDELDRGKYPRMPWHDIHCALWGPP-CRDVARHFVQRWN 573 (952)
Q Consensus 518 ~dY~n~~~~d~~~~~~~~~d~~dr~~~pr~pWhDv~~~v~Gpa-a~dl~~~F~qrWn 573 (952)
+.| .++.+.|.+|. +++|...|.+++.
T Consensus 313 --~lN---------------------------~E~~~~i~d~~~a~~l~~~~~~~~~ 340 (411)
T PRK11263 313 --SLN---------------------------LEANLIIRDRAFNQTLRDNLNGLIA 340 (411)
T ss_pred --hhh---------------------------hhcCEEEeCHHHHHHHHHHHHHHHH
Confidence 111 25678888886 6889999999996
No 31
>PRK05443 polyphosphate kinase; Provisional
Probab=99.07 E-value=5.9e-10 Score=135.31 Aligned_cols=124 Identities=15% Similarity=0.140 Sum_probs=96.5
Q ss_pred HHHHHHHHhccC-----eEEEEeeeeccCCCCChhHHHHHHHHHHHHHHHHHHcCCceEEEEEecCCCCCCCCCCCCCch
Q 002219 767 CAYCSLIEKAEH-----FIYIENQFFISGLSGDEIIRNRVLESLYRRILRAYNEKKCFRVIIVIPLLPGFQGGVDDGGAA 841 (952)
Q Consensus 767 ~ayl~~I~~A~~-----~IYIEnqyFis~~~~~~~v~n~I~~AL~~RI~~A~~~g~~vrV~IvlPl~pgf~g~~~d~~~~ 841 (952)
+..++.|+.|.+ .|.|+- |-++.. ..|.+||. .|+++| ++|.|++|+.+.|+..
T Consensus 351 ~~~~~~i~~Aa~DP~V~~Ik~tl-Yr~~~~-------s~iv~aL~----~Aa~~G--k~V~vlve~karfde~------- 409 (691)
T PRK05443 351 DPVVEFLRQAAADPDVLAIKQTL-YRTSKD-------SPIVDALI----EAAENG--KQVTVLVELKARFDEE------- 409 (691)
T ss_pred hHHHHHHHHhccCCCeeEEEEEE-EEecCC-------HHHHHHHH----HHHHcC--CEEEEEEccCccccHH-------
Confidence 456789999999 799875 444432 27889997 999999 5566669988765311
Q ss_pred hHHHHHHHHHHHHHhhHHHHHHHHHHhcCCCc-ccccccccccccccccCCCCcccccceeeeeEEEEeCc-------EE
Q 002219 842 SVRAIMHWQYRTICRGQNSILHNLYALLGPKT-HDYISFYGLRAYGRLFEDGPVATSQVYVHSKVMIIDDS-------IA 913 (952)
Q Consensus 842 ~~r~i~~~qy~ti~rg~~si~~~L~~~~Gv~~-~~Yi~f~~lr~~~~~~~~g~~~te~iyvHSKlmIVDD~-------~~ 913 (952)
+ ..+.++.|.+ +|+.+ +.| ....+|||+++||++ ++
T Consensus 410 ---~------------n~~~~~~L~~-aGv~V~y~~--------------------~~~k~HaK~~lid~~e~~~~~~~~ 453 (691)
T PRK05443 410 ---A------------NIRWARRLEE-AGVHVVYGV--------------------VGLKTHAKLALVVRREGGGLRRYV 453 (691)
T ss_pred ---H------------HHHHHHHHHH-cCCEEEEcc--------------------CCccceeEEEEEEeecCCceeEEE
Confidence 1 2234577887 89876 322 125899999999999 99
Q ss_pred EEecccCCcCccCCCCCcceEEEEEchhhHHHhhhc
Q 002219 914 LIGSANINDRSLLGSRDSEVSVGLYLFILRWELTDL 949 (952)
Q Consensus 914 iIGSANin~RSm~G~rDsEi~v~i~d~~~~~~~~~~ 949 (952)
.|||+|+|+||. ..++|++++++|++++.++.++
T Consensus 454 ~iGTgN~n~~s~--~~y~D~~l~t~d~~i~~d~~~~ 487 (691)
T PRK05443 454 HLGTGNYNPKTA--RLYTDLSLLTADPEIGEDVTRL 487 (691)
T ss_pred EEcCCCCCcchh--hhccceeEEEeChHHHHHHHHH
Confidence 999999999999 8999999999999999988764
No 32
>cd06875 PX_IRAS The phosphoinositide binding Phox Homology domain of the Imidazoline Receptor Antisera-Selected. The PX domain is a phosphoinositide binding (PI) module present in many proteins with diverse functions such as cell signaling, vesicular trafficking, protein sorting, and lipid modification, among others. Imidazoline Receptor Antisera-Selected (IRAS), also called nischarin, contains an N-terminal PX domain, leucine rich repeats, and a predicted coiled coil domain. The PX domain of IRAS binds to phosphatidylinositol-3-phosphate in membranes. Together with the coiled coil domain, it is essential for the localization of IRAS to endosomes. IRAS has been shown to interact with integrin and inhibit cell migration. Its interaction with alpha5 integrin causes a redistribution of the receptor from the cell surface to endosomal structures, suggesting that IRAS may function as a sorting nexin (SNX) which regulates the endosomal trafficking of integrin. SNXs make up the largest group a
Probab=99.06 E-value=8.7e-10 Score=106.22 Aligned_cols=106 Identities=23% Similarity=0.336 Sum_probs=76.6
Q ss_pred CC-eEEEeeeeecCCCCCCcceeEEEEEEEecceEEEEEEehhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCC
Q 002219 43 LP-KASIVSVSRPDAGDISPMLLSYTIEVQYKQFKWKLVKKASQVFYLHFALKRRAFFEEIQEKQEQVKEWLQNLGMGDH 121 (952)
Q Consensus 43 ~p-~v~I~~~er~~s~~~~~~~~~Y~Iel~~g~~~W~v~r~~~~f~~Lh~~lk~~~~~~~~~~~~~~~~~~~~~~~~~~~ 121 (952)
++ +|+|++++-..+ +++|.|+++.+..+|+|.|||+||..||.+|+... .+..+.
T Consensus 2 ~~~~v~I~~~~~~~~------~~~Y~I~V~~~~~~w~V~RRYseF~~L~~~L~~~~-----------------~~~~~~- 57 (116)
T cd06875 2 PETKIRIPSAETVEG------YTVYIIEVKVGSVEWTVKHRYSDFAELHDKLVAEH-----------------KVDKDL- 57 (116)
T ss_pred CCEEEEECCEEEECC------EEEEEEEEEECCeEEEEEecHHHHHHHHHHHHHHc-----------------CcccCc-
Confidence 34 789999874433 88999999999999999999999999999888411 111000
Q ss_pred ccccccCccccccccccccccccCCCCCCCCCCCCCCcccc-CCCcchHHHHHHHHHHHHHHhccccccchhhhheeeec
Q 002219 122 MAVVQEDDEGDEIAVNHDESSKKRDVPANAALPVIRPALGR-QHSMSDRAKVAMQQYLNHFLGNMDIVNSREVCKFLEAS 200 (952)
Q Consensus 122 ~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~lp~~~~~~~~-~~~~~~r~~~~LE~YL~~lL~~~~~~n~~~l~~FlevS 200 (952)
+|.- .-++. .+..-..||.+||+||+.|+.++..+++.++.+||+++
T Consensus 58 -------------------------------~P~K-k~~~~~~~~~ie~Rr~~Le~yL~~ll~~~~~~~s~~l~~FL~~~ 105 (116)
T cd06875 58 -------------------------------LPPK-KLIGNKSPSFVEKRRKELEIYLQTLLSFFQKTMPRELAHFLDFH 105 (116)
T ss_pred -------------------------------CCCc-cccCCCCHHHHHHHHHHHHHHHHHHHhhhcccCCHHHHHHhCCC
Confidence 2210 01111 12233344579999999999999999999999999998
Q ss_pred cCCC
Q 002219 201 KLSF 204 (952)
Q Consensus 201 ~~sf 204 (952)
+...
T Consensus 106 ~~~~ 109 (116)
T cd06875 106 KYEI 109 (116)
T ss_pred ceeE
Confidence 8754
No 33
>PF00787 PX: PX domain; InterPro: IPR001683 The PX (phox) domain [] occurs in a variety of eukaryotic proteins and have been implicated in highly diverse functions such as cell signalling, vesicular trafficking, protein sorting and lipid modification [, , ]. PX domains are important phosphoinositide-binding modules that have varying lipid-binding specificities []. The PX domain is approximately 120 residues long [], and folds into a three-stranded beta-sheet followed by three -helices and a proline-rich region that immediately preceeds a membrane-interaction loop and spans approximately eight hydrophobic and polar residues. The PX domain of p47phox binds to the SH3 domain in the same protein []. Phosphorylation of p47(phox), a cytoplasmic activator of the microbicidal phagocyte oxidase (phox), elicits interaction of p47(phox) with phoinositides. The protein phosphorylation-driven conformational change of p47(phox) enables its PX domain to bind to phosphoinositides, the interaction of which plays a crucial role in recruitment of p47(phox) from the cytoplasm to membranes and subsequent activation of the phagocyte oxidase. The lipid-binding activity of this protein is normally suppressed by intramolecular interaction of the PX domain with the C-terminal Src homology 3 (SH3) domain []. The PX domain is conserved from yeast to human. A recent multiple alignment of representative PX domain sequences can be found in [], although showing relatively little sequence conservation, their structure appears to be highly conserved. Although phosphatidylinositol-3-phosphate (PtdIns(3)P) is the primary target of PX domains, binding to phosphatidic acid, phosphatidylinositol-3,4-bisphosphate (PtdIns(3,4)P2), phosphatidylinositol-3,5-bisphosphate (PtdIns(3,5)P2), phosphatidylinositol-4,5-bisphosphate (PtdIns(4,5)P2), and phosphatidylinositol-3,4,5-trisphosphate (PtdIns(3,4,5)P3) has been reported as well. The PX-domain is also a protein-protein interaction domain [].; GO: 0005515 protein binding, 0035091 phosphatidylinositol binding, 0007154 cell communication; PDB: 2DYB_A 1H6H_A 2WWE_A 1XTN_B 1XTE_A 2CZO_A 2V6V_B 2V14_A 2I4K_A 3IQ2_A ....
Probab=98.92 E-value=3e-09 Score=99.50 Aligned_cols=106 Identities=23% Similarity=0.369 Sum_probs=69.2
Q ss_pred eEEEeeeeecCCCCCCcceeEEEEEEEecceEEEEEEehhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCccc
Q 002219 45 KASIVSVSRPDAGDISPMLLSYTIEVQYKQFKWKLVKKASQVFYLHFALKRRAFFEEIQEKQEQVKEWLQNLGMGDHMAV 124 (952)
Q Consensus 45 ~v~I~~~er~~s~~~~~~~~~Y~Iel~~g~~~W~v~r~~~~f~~Lh~~lk~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 124 (952)
+|+|++.++..+.. ...+.|.|++..|...|+|.|+|+||..||.+|+.... ...+
T Consensus 5 ~v~v~~~~~~~~~~--~~~~~~~i~~~~~~~~~~v~rry~dF~~L~~~L~~~~~----------------~~~~------ 60 (113)
T PF00787_consen 5 QVSVVDPETSGNKK--KTYYIYQIELQDGKESWSVYRRYSDFYELHRKLKKRFP----------------SRKL------ 60 (113)
T ss_dssp EEEEEEEEEESSSS--EEEEEEEEEETTSSSEEEEEEEHHHHHHHHHHHHHHHT----------------TSGS------
T ss_pred EEEEcCCEEEcCCC--EEEEEEEEEECCCCEEEEEEEEHHHHHHHHHHHhhhhc----------------cccc------
Confidence 57888887653322 23344444444445799999999999999999984110 1111
Q ss_pred cccCccccccccccccccccCCCCCCCCCCCCCCcc---ccCCCcchHHHHHHHHHHHHHHhccccccchhhhheeeec
Q 002219 125 VQEDDEGDEIAVNHDESSKKRDVPANAALPVIRPAL---GRQHSMSDRAKVAMQQYLNHFLGNMDIVNSREVCKFLEAS 200 (952)
Q Consensus 125 ~~~~~~~~~~~~~~~~~~~~~~~p~~~~lp~~~~~~---~~~~~~~~r~~~~LE~YL~~lL~~~~~~n~~~l~~FlevS 200 (952)
|. +|...... .....+.+.++..||.||+.++.++.++++..+++|||.|
T Consensus 61 -----------------------p~---~P~~~~~~~~~~~~~~~~~~R~~~L~~yL~~l~~~~~~~~s~~l~~FL~~~ 113 (113)
T PF00787_consen 61 -----------------------PP---FPPKQWFSNSRNLDPEFIEERRQALEKYLQSLLSHPELRSSEALKEFLESS 113 (113)
T ss_dssp -----------------------TS---SSTSSSSSSSSTTSHHHHHHHHHHHHHHHHHHHTSCHHHHSHHHHHHHCT-
T ss_pred -----------------------cc---CCccccccccccccHHHHHHHHHHHHHHHHHHHcChhhhCchHHHHhcCCC
Confidence 11 22211111 1123444566789999999999999998999999999986
No 34
>cd06872 PX_SNX19_like_plant The phosphoinositide binding Phox Homology domain of uncharacterized SNX19-like plant proteins. The PX domain is a phosphoinositide (PI) binding module involved in targeting proteins to PI-enriched membranes. Members in this subfamily are uncharacterized plant proteins containing an N-terminal PXA domain, a central PX domain, and a C-terminal domain that is conserved in some sorting nexins (SNXs). This is the same domain architecture found in SNX19. SNX13 and SNX14 also contain these three domains but also contain a regulator of G protein signaling (RGS) domain in between the PXA and PX domains. SNXs make up the largest group among PX domain containing proteins. They are involved in regulating membrane traffic and protein sorting in the endosomal system. The PX domain of SNXs binds PIs and targets the protein to PI-enriched membranes. SNXs differ from each other in PI-binding specificity and affinity, and the presence of other protein-protein interaction dom
Probab=98.87 E-value=1.1e-08 Score=97.30 Aligned_cols=101 Identities=22% Similarity=0.327 Sum_probs=72.9
Q ss_pred eEEEeeeeecCCCCCCcceeEEEEEEEec-ceEEEEEEehhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCcc
Q 002219 45 KASIVSVSRPDAGDISPMLLSYTIEVQYK-QFKWKLVKKASQVFYLHFALKRRAFFEEIQEKQEQVKEWLQNLGMGDHMA 123 (952)
Q Consensus 45 ~v~I~~~er~~s~~~~~~~~~Y~Iel~~g-~~~W~v~r~~~~f~~Lh~~lk~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 123 (952)
+|+|++.++..++.. .+++|+|+++.+ .-+|+|.|+|+||..||.+|+... . . ..+
T Consensus 2 ~~~v~~~~~~~~~~~--~y~vY~I~v~~~~~~~w~v~RRYsdF~~L~~~L~~~~------~--------~-~~~------ 58 (107)
T cd06872 2 SCRVLGAEIVKSGSK--SFAVYSVAVTDNENETWVVKRRFRNFETLHRRLKEVP------K--------Y-NLE------ 58 (107)
T ss_pred eeEEeeeEEEecCCc--cEEEEEEEEEECCCceEEEEehHHHHHHHHHHHHhcc------C--------C-CCC------
Confidence 689999998877642 489999999985 779999999999999999887300 0 0 111
Q ss_pred ccccCccccccccccccccccCCCCCCCCCCCCCCcc-c-cCCCcchHHHHHHHHHHHHHHhccccccchhhhheee
Q 002219 124 VVQEDDEGDEIAVNHDESSKKRDVPANAALPVIRPAL-G-RQHSMSDRAKVAMQQYLNHFLGNMDIVNSREVCKFLE 198 (952)
Q Consensus 124 ~~~~~~~~~~~~~~~~~~~~~~~~p~~~~lp~~~~~~-~-~~~~~~~r~~~~LE~YL~~lL~~~~~~n~~~l~~Fle 198 (952)
||.-+ -+ + .....-+.|+.+||+||+.|+..+.++++..+.+||-
T Consensus 59 -----------------------------lP~K~-~~~~~~~~~fie~Rr~~Le~yL~~l~~~p~i~~s~~~~~FL~ 105 (107)
T cd06872 59 -----------------------------LPPKR-FLSSSLDGAFIEERCKLLDKYLKDLLVIEKVAESHEVWSFLS 105 (107)
T ss_pred -----------------------------CCCcc-ccCCCCCHHHHHHHHHHHHHHHHHHhcChhhhcCHHHHHHhc
Confidence 22100 01 0 1122233456799999999999999999999999984
No 35
>cd06878 PX_SNX25 The phosphoinositide binding Phox Homology domain of Sorting Nexin 25. The PX domain is a phosphoinositide (PI) binding module present in many proteins with diverse functions. Sorting nexins (SNXs) make up the largest group among PX domain containing proteins. They are involved in regulating membrane traffic and protein sorting in the endosomal system. The PX domain of SNXs binds PIs and targets the protein to PI-enriched membranes. SNXs differ from each other in PI-binding specificity and affinity, and the presence of other protein-protein interaction domains, which help determine subcellular localization and specific function in the endocytic pathway. The function of SNX25 is not yet known. It has been found in exosomes from human malignant pleural effusions. SNX25 shows the same domain architecture as SNX13 and SNX14, containing an N-terminal PXA domain, a regulator of G protein signaling (RGS) domain, a PX domain, and a C-terminal domain that is conserved in some S
Probab=98.86 E-value=6.6e-09 Score=101.71 Aligned_cols=107 Identities=26% Similarity=0.423 Sum_probs=72.3
Q ss_pred eEEEeeeeecCCCCCCcceeEEEEEEEecce----------EEEEEEehhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 002219 45 KASIVSVSRPDAGDISPMLLSYTIEVQYKQF----------KWKLVKKASQVFYLHFALKRRAFFEEIQEKQEQVKEWLQ 114 (952)
Q Consensus 45 ~v~I~~~er~~s~~~~~~~~~Y~Iel~~g~~----------~W~v~r~~~~f~~Lh~~lk~~~~~~~~~~~~~~~~~~~~ 114 (952)
+|.|.+++-....+ ..+++|.|+|+-... .|+|.|+|+||..||.+|+.. +. .+.
T Consensus 10 ~~~I~~~~~~~~~~--~~~~vY~I~V~~~~~~~~~~~~~~~~W~V~RRYsdF~~Lh~~Lk~~------------~~-~~~ 74 (127)
T cd06878 10 RANIQSAEVTVEDD--KEVPLYVIVVHVSEVGLNEDESISSGWVVTRKLSEFHDLHRKLKEC------------SS-WLK 74 (127)
T ss_pred eEEEeeeEEEcCCC--eEEEEEEEEEEEecCCCCCCCCCcceEEEEEeHHHHHHHHHHHHHH------------CC-Ccc
Confidence 69999998433322 248899999997643 499999999999999988830 10 000
Q ss_pred hcCCCCCccccccCccccccccccccccccCCCCCCCCCCCCCCccc-cCCCcchHHHHHHHHHHHHHHhccccccchhh
Q 002219 115 NLGMGDHMAVVQEDDEGDEIAVNHDESSKKRDVPANAALPVIRPALG-RQHSMSDRAKVAMQQYLNHFLGNMDIVNSREV 193 (952)
Q Consensus 115 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~lp~~~~~~~-~~~~~~~r~~~~LE~YL~~lL~~~~~~n~~~l 193 (952)
.+. .|. +|. ..++ .....-+.+|.+||.||+.||..+.++++..+
T Consensus 75 ~~~-----------------------------lP~---ppK--k~~~~~~~~fle~Rr~~Le~YLq~ll~~~~l~~s~~l 120 (127)
T cd06878 75 KVE-----------------------------LPS---LSK--KWFKSIDKKFLDKSKNQLQKYLQFILEDETLCQSEAL 120 (127)
T ss_pred ccC-----------------------------CCC---CCc--cccccCCHHHHHHHHHHHHHHHHHHhCChhhcCCHHH
Confidence 011 111 110 0111 12333445567999999999999999999999
Q ss_pred hheeeec
Q 002219 194 CKFLEAS 200 (952)
Q Consensus 194 ~~FlevS 200 (952)
.+||+-|
T Consensus 121 ~~FLsp~ 127 (127)
T cd06878 121 YSFLSPS 127 (127)
T ss_pred HHHcCCC
Confidence 9999755
No 36
>cd06880 PX_SNX22 The phosphoinositide binding Phox Homology domain of Sorting Nexin 22. The PX domain is a phosphoinositide (PI) binding module present in many proteins with diverse functions. Sorting nexins (SNXs) make up the largest group among PX domain containing proteins. They are involved in regulating membrane traffic and protein sorting in the endosomal system. The PX domain of SNXs binds PIs and targets the protein to PI-enriched membranes. SNXs differ from each other in PI-binding specificity and affinity, and the presence of other protein-protein interaction domains, which help determine subcellular localization and specific function in the endocytic pathway. SNX22 may be involved in recruiting other proteins to the membrane via protein-protein and protein-ligand interaction. The biological function of SNX22 is not yet known.
Probab=98.85 E-value=2e-08 Score=96.01 Aligned_cols=105 Identities=20% Similarity=0.253 Sum_probs=72.6
Q ss_pred eEEEeeeeecCCCCCCcceeEEEEEEEecceEEEEEEehhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCccc
Q 002219 45 KASIVSVSRPDAGDISPMLLSYTIEVQYKQFKWKLVKKASQVFYLHFALKRRAFFEEIQEKQEQVKEWLQNLGMGDHMAV 124 (952)
Q Consensus 45 ~v~I~~~er~~s~~~~~~~~~Y~Iel~~g~~~W~v~r~~~~f~~Lh~~lk~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 124 (952)
.|+|.+++..+... ...+++|+|+++.+.-.|+|.|||+||..||.+|+. ..++++
T Consensus 2 ~V~Ip~~~~~~~~~-~~~y~~Y~I~v~~~~~~~~v~RRYseF~~Lh~~L~~-------------------~~~~p~---- 57 (110)
T cd06880 2 EVSIPSYRLEVDES-EKPYTVFTIEVLVNGRRHTVEKRYSEFHALHKKLKK-------------------SIKTPD---- 57 (110)
T ss_pred EEEeCcEEEeeCCC-CCCeEEEEEEEEECCeEEEEEccHHHHHHHHHHHHH-------------------HCCCCC----
Confidence 36777776433321 125899999999999999999999999999998873 122111
Q ss_pred cccCccccccccccccccccCCCCCCCCCCCCCCccc-cCCCcchHHHHHHHHHHHHHHhccccccchhhhheeeeccCC
Q 002219 125 VQEDDEGDEIAVNHDESSKKRDVPANAALPVIRPALG-RQHSMSDRAKVAMQQYLNHFLGNMDIVNSREVCKFLEASKLS 203 (952)
Q Consensus 125 ~~~~~~~~~~~~~~~~~~~~~~~p~~~~lp~~~~~~~-~~~~~~~r~~~~LE~YL~~lL~~~~~~n~~~l~~FlevS~~s 203 (952)
||.-+ ++ .....-+.|+.+||+||+.|+..+. .+..+++||++....
T Consensus 58 ----------------------------~P~K~--~~~~~~~~ie~Rr~~Le~yL~~ll~~~~--~s~~l~~FL~~~~~~ 105 (110)
T cd06880 58 ----------------------------FPPKR--VRNWNPKVLEQRRQGLEAYLQGLLKINE--LPKQLLDFLGVRHFP 105 (110)
T ss_pred ----------------------------CCCCC--ccCCCHHHHHHHHHHHHHHHHHHHcCcc--ccHHHHHHhCCCCCC
Confidence 22100 11 1112233445799999999998776 689999999998765
Q ss_pred CC
Q 002219 204 FS 205 (952)
Q Consensus 204 f~ 205 (952)
-.
T Consensus 106 ~~ 107 (110)
T cd06880 106 SL 107 (110)
T ss_pred CC
Confidence 33
No 37
>PRK09428 pssA phosphatidylserine synthase; Provisional
Probab=98.84 E-value=3e-08 Score=115.83 Aligned_cols=143 Identities=17% Similarity=0.204 Sum_probs=93.5
Q ss_pred HHHHHHHHHHHhccCeEEEEeeeeccCCCCChhHHHHHHHHHHHHHHHHHHcCCceEEEEEecCCCCCCCCCCCCCchhH
Q 002219 764 SIHCAYCSLIEKAEHFIYIENQFFISGLSGDEIIRNRVLESLYRRILRAYNEKKCFRVIIVIPLLPGFQGGVDDGGAASV 843 (952)
Q Consensus 764 sI~~ayl~~I~~A~~~IYIEnqyFis~~~~~~~v~n~I~~AL~~RI~~A~~~g~~vrV~IvlPl~pgf~g~~~d~~~~~~ 843 (952)
..+.+++++|++|+++||||+-||-.+ ....+|.+||. +|+++.++|+|.|++-..=+--|-++..+.
T Consensus 35 ~f~~~Ll~~I~~Ak~~I~l~~y~~~~D-----~~g~~il~AL~----~a~~~~~gv~VrvLvD~~Ra~Rg~iG~~~~--- 102 (451)
T PRK09428 35 DFRETLLEKIASAKKRIYIVALYLEDD-----EAGREILDALY----QAKQQNPELDIKVLVDWHRAQRGLIGAAAS--- 102 (451)
T ss_pred HHHHHHHHHHHhcCCeEEEEEEEecCC-----chHHHHHHHHH----HHHhcCCCcEEEEEEEcccccccccccCCC---
Confidence 799999999999999999999777544 45678888887 777666668888777732111111111000
Q ss_pred HHHHHHHHHHHHhhHHHHHHHHHHhc-CCCccccccccccc-ccccccCCCCcccccceeeeeEEEEeCcEEEEecccCC
Q 002219 844 RAIMHWQYRTICRGQNSILHNLYALL-GPKTHDYISFYGLR-AYGRLFEDGPVATSQVYVHSKVMIIDDSIALIGSANIN 921 (952)
Q Consensus 844 r~i~~~qy~ti~rg~~si~~~L~~~~-Gv~~~~Yi~f~~lr-~~~~~~~~g~~~te~iyvHSKlmIVDD~~~iIGSANin 921 (952)
.+..+++..|.++. |+++. +|++. ...++ ....|.|++||||++++.| |||+
T Consensus 103 ------------~~~~~~~~~l~~~~~gv~v~----~f~~p~~~~e~---------~gr~HrKi~IiD~~v~ysG-aNi~ 156 (451)
T PRK09428 103 ------------NTNADWYCEMAQEYPGVDIP----VYGVPVNTREA---------LGVLHLKGFIIDDTVLYSG-ASLN 156 (451)
T ss_pred ------------CcCHHHHHHHHHhCCCceEE----EcCCccccchh---------hhhceeeEEEECCCEEEec-cccc
Confidence 01245677887733 46654 33221 01011 2348999999999999999 8999
Q ss_pred cCccCC----CCCcceEEEEEchhhHHHh
Q 002219 922 DRSLLG----SRDSEVSVGLYLFILRWEL 946 (952)
Q Consensus 922 ~RSm~G----~rDsEi~v~i~d~~~~~~~ 946 (952)
+-.+-. ..|. .+.|.+|.++.-+
T Consensus 157 d~Yl~~~~~~r~Dr--y~~i~g~~la~~~ 183 (451)
T PRK09428 157 NVYLHQHDKYRYDR--YHLIRNAELADSM 183 (451)
T ss_pred HHHhcCCcccCcce--EEEEeCchHHHHH
Confidence 966521 1244 6779998877543
No 38
>cd06897 PX_SNARE The phosphoinositide binding Phox Homology domain of SNARE proteins from fungi. The PX domain is a phosphoinositide (PI) binding module present in many proteins with diverse functions such as cell signaling, vesicular trafficking, protein sorting, and lipid modification, among others. This subfamily is composed of fungal proteins similar to Saccharomyces cerevisiae Vam7p. They contain an N-terminal PX domain and a C-terminal SNARE domain. The SNARE (Soluble NSF attachment protein receptor) family of proteins are integral membrane proteins that serve as key factors for vesicular trafficking. Vam7p is anchored at the vacuolar membrane through the specific interaction of its PX domain with phosphatidylinositol-3-phosphate (PI3P) present in bilayers. It plays an essential role in vacuole fusion. The PX domain is involved in targeting of proteins to PI-enriched membranes, and may also be involved in protein-protein interaction.
Probab=98.83 E-value=1.4e-08 Score=96.16 Aligned_cols=101 Identities=21% Similarity=0.293 Sum_probs=70.0
Q ss_pred eEEEeeeeecCCCCCCcceeEEEEEEEecceEEEEEEehhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCccc
Q 002219 45 KASIVSVSRPDAGDISPMLLSYTIEVQYKQFKWKLVKKASQVFYLHFALKRRAFFEEIQEKQEQVKEWLQNLGMGDHMAV 124 (952)
Q Consensus 45 ~v~I~~~er~~s~~~~~~~~~Y~Iel~~g~~~W~v~r~~~~f~~Lh~~lk~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 124 (952)
+|+|.++... + ..+++|+|+++.+...|+|.|||+||..||.+|+. ..|..
T Consensus 2 ~v~ip~~~~~-~----~~~~~Y~I~v~~~~~~~~v~rRYseF~~L~~~L~~-------------------~~~~~----- 52 (108)
T cd06897 2 EISIPTTSVS-P----KPYTVYNIQVRLPLRSYTVSRRYSEFVALHKQLES-------------------EVGIE----- 52 (108)
T ss_pred eEEcCCeEEc-C----CCeEEEEEEEEcCCceEEEEcchHHHHHHHHHHHH-------------------HcCCC-----
Confidence 3566666533 1 13789999999999999999999999999998874 11100
Q ss_pred cccCccccccccccccccccCCCCCCCCCCCCCCccc---cCCCcchHHHHHHHHHHHHHHhcc--ccccchhhhheeee
Q 002219 125 VQEDDEGDEIAVNHDESSKKRDVPANAALPVIRPALG---RQHSMSDRAKVAMQQYLNHFLGNM--DIVNSREVCKFLEA 199 (952)
Q Consensus 125 ~~~~~~~~~~~~~~~~~~~~~~~p~~~~lp~~~~~~~---~~~~~~~r~~~~LE~YL~~lL~~~--~~~n~~~l~~Flev 199 (952)
..|. ||.- ..++ ..+..-+.|+++||.||+.|+.++ .++++..+.+||++
T Consensus 53 ---------------------~~p~---lP~K-~~~~~~~~~~~~ie~Rr~~Le~yL~~l~~~~~~~l~~s~~~~~FL~~ 107 (108)
T cd06897 53 ---------------------PPYP---LPPK-SWFLSTSSNPKLVEERRVGLEAFLRALLNDEDSRWRNSPAVKEFLNL 107 (108)
T ss_pred ---------------------CCCC---CCCc-CEecccCCCHHHHHHHHHHHHHHHHHHHcCCccchhcCHHHHHHhCC
Confidence 0011 3321 1111 112233344579999999999999 99999999999986
No 39
>cd06870 PX_CISK The phosphoinositide binding Phox Homology Domain of Cytokine-Independent Survival Kinase. The PX domain is a phosphoinositide (PI) binding module present in many proteins with diverse functions. Cytokine-independent survival kinase (CISK), also called Serum- and Glucocorticoid-induced Kinase 3 (SGK3), plays a role in cell growth and survival. It is expressed in most tissues and is most abundant in the embryo and adult heart and spleen. It was originally discovered in a screen for antiapoptotic genes. It phosphorylates and inhibits the proapoptotic proteins, Bad and FKHRL1. CISK/SGK3 also regulates many transporters, ion channels, and receptors. It plays a critical role in hair follicle morphogenesis and hair cycling. N-terminal to a catalytic kinase domain, CISK contains a PX domain which binds highly phosphorylated PIs, directs membrane localization, and regulates the enzyme's activity.
Probab=98.81 E-value=2.4e-08 Score=95.14 Aligned_cols=107 Identities=16% Similarity=0.317 Sum_probs=72.7
Q ss_pred CCeEEEeeee-ecCCCCCCcceeEEEEEEEecceEEEEEEehhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCC
Q 002219 43 LPKASIVSVS-RPDAGDISPMLLSYTIEVQYKQFKWKLVKKASQVFYLHFALKRRAFFEEIQEKQEQVKEWLQNLGMGDH 121 (952)
Q Consensus 43 ~p~v~I~~~e-r~~s~~~~~~~~~Y~Iel~~g~~~W~v~r~~~~f~~Lh~~lk~~~~~~~~~~~~~~~~~~~~~~~~~~~ 121 (952)
+|-|+|.++. ..+.+ ..+++|.|++..+.-.|+|.|||+||..||.+|+.. +... .+++
T Consensus 2 ~~~~~i~~~~~~~~~~---~~~~~Y~I~v~~~~~~~~v~RRYseF~~L~~~L~~~------------~~~~--~~~l--- 61 (109)
T cd06870 2 CPSVSIPSSDEDREKK---KRFTVYKVVVSVGRSSWFVFRRYAEFDKLYESLKKQ------------FPAS--NLKI--- 61 (109)
T ss_pred CcceeeccceeeccCC---CCeEEEEEEEEECCeEEEEEeehHHHHHHHHHHHHH------------Cccc--CcCC---
Confidence 5677888755 22222 248999999999999999999999999999988730 1000 0111
Q ss_pred ccccccCccccccccccccccccCCCCCCCCCCCCCCccccCCCcchHHHHHHHHHHHHHHhccccccchhhhheeeec
Q 002219 122 MAVVQEDDEGDEIAVNHDESSKKRDVPANAALPVIRPALGRQHSMSDRAKVAMQQYLNHFLGNMDIVNSREVCKFLEAS 200 (952)
Q Consensus 122 ~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~lp~~~~~~~~~~~~~~r~~~~LE~YL~~lL~~~~~~n~~~l~~FlevS 200 (952)
|....+.. .+ ....-+.|+..||+||+.|+.++.++++..+.+||+++
T Consensus 62 --------------------------P~K~~~~~---~~--~~~~ie~Rr~~Le~fL~~ll~~p~l~~s~~~~~FL~~~ 109 (109)
T cd06870 62 --------------------------PGKRLFGN---NF--DPDFIKQRRAGLDEFIQRLVSDPKLLNHPDVRAFLQMD 109 (109)
T ss_pred --------------------------CCCccccc---CC--CHHHHHHHHHHHHHHHHHHhCCHhhhcChHHHHHhCcC
Confidence 11111110 00 12223344579999999999999999999999999874
No 40
>cd06877 PX_SNX14 The phosphoinositide binding Phox Homology domain of Sorting Nexin 14. The PX domain is a phosphoinositide (PI) binding module present in many proteins with diverse functions. Sorting nexins (SNXs) make up the largest group among PX domain containing proteins. They are involved in regulating membrane traffic and protein sorting in the endosomal system. The PX domain of SNXs binds PIs and targets the protein to PI-enriched membranes. SNXs differ from each other in PI-binding specificity and affinity, and the presence of other protein-protein interaction domains, which help determine subcellular localization and specific function in the endocytic pathway. SNX14 may be involved in recruiting other proteins to the membrane via protein-protein and protein-ligand interaction. It is expressed in the embryonic nervous system of mice, and is co-expressed in the motoneurons and the anterior pituary with Islet-1. SNX14 shows a similar domain architecture as SNX13, containing an N
Probab=98.81 E-value=2.4e-08 Score=96.78 Aligned_cols=106 Identities=18% Similarity=0.334 Sum_probs=72.0
Q ss_pred CCeEEEeeeeec-C-CCCCCcceeEEEEEEEe--------cceEEEEEEehhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002219 43 LPKASIVSVSRP-D-AGDISPMLLSYTIEVQY--------KQFKWKLVKKASQVFYLHFALKRRAFFEEIQEKQEQVKEW 112 (952)
Q Consensus 43 ~p~v~I~~~er~-~-s~~~~~~~~~Y~Iel~~--------g~~~W~v~r~~~~f~~Lh~~lk~~~~~~~~~~~~~~~~~~ 112 (952)
.++|+|.+++-. + .+. ..+++|.|+++. +.-.|+|.|||+||..||.+|+..
T Consensus 2 ~~~i~I~~~~~~~~~~~~--~~~~~Y~I~V~~~~~~~~~~~~~~w~V~RRYsdF~~L~~~L~~~---------------- 63 (119)
T cd06877 2 AWRVSIPYVEMRRDPSNG--ERIYVFCIEVERNDRRAKGHEPQHWSVLRRYNEFYVLESKLTEF---------------- 63 (119)
T ss_pred cceEEeeeEEEeecCCCC--cEEEEEEEEEEEccccCCCCCcCceEEEechHHHHHHHHHHHHH----------------
Confidence 357899998733 2 221 248999999993 457999999999999999988730
Q ss_pred HhhcCCCCCccccccCccccccccccccccccCCCCCCCCCCCCCCccc-cCCCcchHHHHHHHHHHHHHHhccccccch
Q 002219 113 LQNLGMGDHMAVVQEDDEGDEIAVNHDESSKKRDVPANAALPVIRPALG-RQHSMSDRAKVAMQQYLNHFLGNMDIVNSR 191 (952)
Q Consensus 113 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~lp~~~~~~~-~~~~~~~r~~~~LE~YL~~lL~~~~~~n~~ 191 (952)
...+.+ | .||.-+ .++ .....-+.||.+||+||+.|+..+.++++.
T Consensus 64 ~~~~~~-----------------------------~---~lP~K~-~~~~~~~~~ie~Rr~~Le~fL~~ll~~~~l~~s~ 110 (119)
T cd06877 64 HGEFPD-----------------------------A---PLPSRR-IFGPKSYEFLESKREIFEEFLQKLLQKPELRGSE 110 (119)
T ss_pred CCCCCC-----------------------------C---CCcCCc-ccCCCCHHHHHHHHHHHHHHHHHHhCCcccccCH
Confidence 000100 1 133211 111 112333455679999999999999999999
Q ss_pred hhhheeee
Q 002219 192 EVCKFLEA 199 (952)
Q Consensus 192 ~l~~Flev 199 (952)
.+.+||+.
T Consensus 111 ~~~~FL~~ 118 (119)
T cd06877 111 LLYDFLSP 118 (119)
T ss_pred HHHHhCCC
Confidence 99999974
No 41
>cd06882 PX_p40phox The phosphoinositide binding Phox Homology domain of the p40phox subunit of NADPH oxidase. The PX domain is a phosphoinositide binding module present in many proteins with diverse functions such as cell signaling, vesicular trafficking, protein sorting, and lipid modification, among others. p40phox contains an N-terminal PX domain, a central SH3 domain that binds p47phox, and a C-terminal PB1 domain that interacts with p67phox. It is a cytosolic subunit of the phagocytic NADPH oxidase complex (also called Nox2 or gp91phox) which plays a crucial role in the cellular response to bacterial infection. NADPH oxidase catalyzes the transfer of electrons from NADPH to oxygen during phagocytosis forming superoxide and reactive oxygen species. p40phox positively regulates NADPH oxidase in both phosphatidylinositol-3-phosphate (PI3P)-dependent and PI3P-independent manner. The PX domain is a phospholipid-binding module involved in the membrane targeting of proteins. The p40phox
Probab=98.79 E-value=3.7e-08 Score=95.98 Aligned_cols=116 Identities=20% Similarity=0.315 Sum_probs=80.3
Q ss_pred CC-eEEEeeeeecCCCCCCcceeEEEEEEEec-ceEEEEEEehhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCC
Q 002219 43 LP-KASIVSVSRPDAGDISPMLLSYTIEVQYK-QFKWKLVKKASQVFYLHFALKRRAFFEEIQEKQEQVKEWLQNLGMGD 120 (952)
Q Consensus 43 ~p-~v~I~~~er~~s~~~~~~~~~Y~Iel~~g-~~~W~v~r~~~~f~~Lh~~lk~~~~~~~~~~~~~~~~~~~~~~~~~~ 120 (952)
+| .++|.+++..... ..+++|.|+++.. .-.|+|.|+|+||..||.+|+. ..|...
T Consensus 2 ~~i~~~I~~~~~~~~~---~~y~vY~I~v~~~~~~~~~V~RRYseF~~L~~~L~~-------------------~fp~~~ 59 (123)
T cd06882 2 VAVSATIADIEEKRGF---TNYYVFVIEVKTKGGSKYLIYRRYRQFFALQSKLEE-------------------RFGPEA 59 (123)
T ss_pred CcEEEEEeeeeEEeCC---CCEEEEEEEEEEcCCCEEEEEEEHHHHHHHHHHHHH-------------------hCCccc
Confidence 45 7999999753322 3489999999864 4589999999999999998873 222100
Q ss_pred CccccccCccccccccccccccccCCCCCCCCCCCCCCccccCCCcchHHHHHHHHHHHHHHhccc-cccchhhhheeee
Q 002219 121 HMAVVQEDDEGDEIAVNHDESSKKRDVPANAALPVIRPALGRQHSMSDRAKVAMQQYLNHFLGNMD-IVNSREVCKFLEA 199 (952)
Q Consensus 121 ~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~lp~~~~~~~~~~~~~~r~~~~LE~YL~~lL~~~~-~~n~~~l~~Flev 199 (952)
....+++.+|. ||.-+ .+++...+..+|+..||.||+.|++.+. ++++..+..||..
T Consensus 60 ------------------~~~~~~~~lP~---lP~k~-~~~~~~~~~e~Rr~~Le~yl~~Ll~~p~~i~~~~~v~~Fl~~ 117 (123)
T cd06882 60 ------------------GSSAYDCTLPT---LPGKI-YVGRKAEIAERRIPLLNRYMKELLSLPVWVLMDEDVRLFFYQ 117 (123)
T ss_pred ------------------ccCCCCCccCC---CCCCe-ecCccHHHHHHHHHHHHHHHHHHHcCCHHhcCCHHHHHHhCC
Confidence 00112344555 55321 2333335666777899999999998875 7899999999987
Q ss_pred ccC
Q 002219 200 SKL 202 (952)
Q Consensus 200 S~~ 202 (952)
+.-
T Consensus 118 ~~~ 120 (123)
T cd06882 118 TES 120 (123)
T ss_pred Ccc
Confidence 753
No 42
>cd07276 PX_SNX16 The phosphoinositide binding Phox Homology domain of Sorting Nexin 16. The PX domain is a phosphoinositide (PI) binding module present in many proteins with diverse functions. Sorting nexins (SNXs) make up the largest group among PX domain containing proteins. They are involved in regulating membrane traffic and protein sorting in the endosomal system. The PX domain of SNXs binds PIs and targets the protein to PI-enriched membranes. SNXs differ from each other in PI-binding specificity and affinity, and the presence of other protein-protein interaction domains, which help determine subcellular localization and specific function in the endocytic pathway. SNX16 contains a central PX domain followed by a coiled-coil region. SNX16 is localized in early and recycling endosomes through the binding of its PX domain to phosphatidylinositol-3-phosphate (PI3P). It plays a role in epidermal growth factor (EGF) signaling by regulating EGF receptor membrane trafficking.
Probab=98.78 E-value=3.3e-08 Score=94.34 Aligned_cols=103 Identities=17% Similarity=0.273 Sum_probs=73.2
Q ss_pred eEEEeeeeecCCCCCCcceeEEEEEEEecc-eEEEEEEehhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCcc
Q 002219 45 KASIVSVSRPDAGDISPMLLSYTIEVQYKQ-FKWKLVKKASQVFYLHFALKRRAFFEEIQEKQEQVKEWLQNLGMGDHMA 123 (952)
Q Consensus 45 ~v~I~~~er~~s~~~~~~~~~Y~Iel~~g~-~~W~v~r~~~~f~~Lh~~lk~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 123 (952)
+|.|.+.+..+... .+++|.|+++.+. =.|+|.|||+||..||.+|+. ..|-
T Consensus 5 ~~~i~~~~~~~~~~---~~~vY~I~v~~~~~~~~~v~RRYsdF~~L~~~L~~-------------------~~~~----- 57 (110)
T cd07276 5 RPPILGYEVMEERA---RFTVYKIRVENKVGDSWFVFRRYTDFVRLNDKLKQ-------------------MFPG----- 57 (110)
T ss_pred cceeeeEEEeecCC---CeEEEEEEEEECCCCEEEEEEehHHHHHHHHHHHH-------------------HCCC-----
Confidence 78999998554422 4889999999874 689999999999999998873 1110
Q ss_pred ccccCccccccccccccccccCCCCCCCCCCCCCCcccc--CCCcchHHHHHHHHHHHHHHhccccccchhhhheeeec
Q 002219 124 VVQEDDEGDEIAVNHDESSKKRDVPANAALPVIRPALGR--QHSMSDRAKVAMQQYLNHFLGNMDIVNSREVCKFLEAS 200 (952)
Q Consensus 124 ~~~~~~~~~~~~~~~~~~~~~~~~p~~~~lp~~~~~~~~--~~~~~~r~~~~LE~YL~~lL~~~~~~n~~~l~~FlevS 200 (952)
..|. ||.-+ -++. ....-+.|+..||+||+.++.++.++++..+.+||+++
T Consensus 58 ----------------------~~~~---lP~K~-~~~~~~~~~fie~Rr~~Lq~fL~~ll~~~~l~~s~~~~~FL~~~ 110 (110)
T cd07276 58 ----------------------FRLS---LPPKR-WFKDNFDPDFLEERQLGLQAFVNNIMAHKDIAKCKLVREFFCLD 110 (110)
T ss_pred ----------------------CCCC---CCCcc-eecccCCHHHHHHHHHHHHHHHHHHhcCHhhhcChHHHHHhccC
Confidence 0011 22111 1111 12233344579999999999999999999999999985
No 43
>cd06871 PX_MONaKA The phosphoinositide binding Phox Homology domain of Modulator of Na,K-ATPase. The PX domain is a phosphoinositide (PI) binding module present in many proteins with diverse functions such as cell signaling, vesicular trafficking, protein sorting, and lipid modification, among others. MONaKA (Modulator of Na,K-ATPase) binds the plasma membrane ion transporter, Na,K-ATPase, and modulates its enzymatic and ion pump activities. It modulates brain Na,K-ATPase and may be involved in regulating electrical excitability and synaptic transmission. MONaKA contains an N-terminal PX domain and a C-terminal catalytic kinase domain. The PX domain interacts with PIs and plays a role in targeting proteins to PI-enriched membranes.
Probab=98.77 E-value=3.3e-08 Score=95.88 Aligned_cols=103 Identities=20% Similarity=0.274 Sum_probs=71.5
Q ss_pred eEEEeeeeecCCCCCCcceeEEEEEEEecce---EEEEEEehhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCC
Q 002219 45 KASIVSVSRPDAGDISPMLLSYTIEVQYKQF---KWKLVKKASQVFYLHFALKRRAFFEEIQEKQEQVKEWLQNLGMGDH 121 (952)
Q Consensus 45 ~v~I~~~er~~s~~~~~~~~~Y~Iel~~g~~---~W~v~r~~~~f~~Lh~~lk~~~~~~~~~~~~~~~~~~~~~~~~~~~ 121 (952)
+|.|.+.+-.. .++.|.|++++|.+ .|+|.|||+||..||.+|+.. ...+|+|+
T Consensus 9 ~~~i~~~~~~~------~~t~Y~I~v~~~~~~~~~w~V~RRYsdF~~Lh~~L~~~----------------~~~~plP~- 65 (120)
T cd06871 9 TCVIEASQNIQ------SHTEYIIRVQRGPSPENSWQVIRRYNDFDLLNASLQIS----------------GISLPLPP- 65 (120)
T ss_pred EEEEecCCCcc------CcEEEEEEEEECCcCCceeEEEeeHHHHHHHHHHHHHc----------------CCCCCCCC-
Confidence 56666554222 37899999999865 899999999999999988620 00122221
Q ss_pred ccccccCccccccccccccccccCCCCCCCCCCCCCCccccCCCcchHHHHHHHHHHHHHHhccccccchhhhheeeecc
Q 002219 122 MAVVQEDDEGDEIAVNHDESSKKRDVPANAALPVIRPALGRQHSMSDRAKVAMQQYLNHFLGNMDIVNSREVCKFLEASK 201 (952)
Q Consensus 122 ~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~lp~~~~~~~~~~~~~~r~~~~LE~YL~~lL~~~~~~n~~~l~~FlevS~ 201 (952)
...+.+. ..+.+..| +.+||.||+.++.++.++++..+.+||+.+.
T Consensus 66 ----------------------------K~~~g~~-----~~~~ie~R-r~~Le~yL~~l~~~p~l~~s~~~~~FL~~~~ 111 (120)
T cd06871 66 ----------------------------KKLIGNM-----DREFIAER-QQGLQNYLNVILMNPILASCLPVKKFLDPNN 111 (120)
T ss_pred ----------------------------ccccCCC-----CHHHHHHH-HHHHHHHHHHHHcChhhccCHHHHHhcCccc
Confidence 0011111 11234445 5699999999999999999999999999887
Q ss_pred CCC
Q 002219 202 LSF 204 (952)
Q Consensus 202 ~sf 204 (952)
.+.
T Consensus 112 ~~~ 114 (120)
T cd06871 112 YSA 114 (120)
T ss_pred CCc
Confidence 763
No 44
>cd01251 PH_centaurin_alpha Centaurin alpha Pleckstrin homology (PH) domain. Centaurin alpha Pleckstrin homology (PH) domain. Centaurin alpha is a phophatidlyinositide binding protein consisting of an N-terminal ArfGAP domain and two PH domains. In response to growth factor activation, PI3K phosphorylates phosphatidylinositol 4,5-bisphosphate to phosphatidylinositol 3,4,5-trisphosphate. Centaurin alpha 1 is recruited to the plasma membrane following growth factor stimulation by specific binding of its PH domain to phosphatidylinositol 3,4,5-trisphosphate. Centaurin alpha 2 is constitutively bound to the plasma membrane since it binds phosphatidylinositol 4,5-bisphosphate and phosphatidylinositol 3,4,5-trisphosphate with equal affinity. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specifici
Probab=98.74 E-value=8.4e-08 Score=90.50 Aligned_cols=100 Identities=17% Similarity=0.239 Sum_probs=71.3
Q ss_pred ceeEEEeeecCCccCCCCCCcccccCCCccccCCcceEEEEEeCCeEEEEeCCCCCCccEEEEEeCCCCCCCCCCCcccc
Q 002219 213 KEDYVMAKHLPKISRNDDSRKCCCCPLFTCCNDNWQKVWAVLKPGFLALLADPFDTKPMDIIVFDVLPASDGNGEGRVSL 292 (952)
Q Consensus 213 KEG~l~kr~~~~~~G~~~~~~~~~~~~~~~~~~rw~kRWfvVKdSfL~yv~d~~~~~~~~v~l~D~~~~~~~~~~~~~~~ 292 (952)
|||||.|+.. . . . ..|++||||+++..|.|++++.+..+..+|.++..- . ...+..
T Consensus 1 KeG~L~K~g~---------------~-~--~-k~wkkRwFvL~~~~L~Yyk~~~d~~~~G~I~L~~~~--~---~~~v~~ 56 (103)
T cd01251 1 KEGFMEKTGP---------------K-H--T-EGFKKRWFTLDDRRLMYFKDPLDAFAKGEVFLGSQE--D---GYEVRE 56 (103)
T ss_pred CceeEEecCC---------------C-C--C-CCceeEEEEEeCCEEEEECCCCCcCcCcEEEeeccc--c---ceeEec
Confidence 7999998731 0 0 1 469999999999999999999888888888776411 0 001110
Q ss_pred cccccccCCcceeEEEEeCceEEEEEecchhhHHHHHHHHHhcc
Q 002219 293 ATEVKERNPLRHAFKVTCGVRSIRLRTRTGAKVRDWVAAINDAG 336 (952)
Q Consensus 293 ~~~~~~~~~~~~~~~i~~~~r~l~l~~~s~~~~~~w~~~i~~~~ 336 (952)
+..........++|.|.+.+|+..|.|.|.....+|+++|+.+.
T Consensus 57 ~~~~~~~~~~~~~F~i~t~~Rty~l~a~s~~e~~~Wi~ai~~v~ 100 (103)
T cd01251 57 GLPPGTQGNHWYGVTLVTPERKFLFACETEQDRREWIAAFQNVL 100 (103)
T ss_pred cCCccccccccceEEEEeCCeEEEEECCCHHHHHHHHHHHHHHh
Confidence 00000011123599999999999999999999999999999865
No 45
>PF00614 PLDc: Phospholipase D Active site motif; InterPro: IPR001736 Phosphatidylcholine-hydrolysing phospholipase D (PLD) isoforms are activated by ADP-ribosylation factors (ARFs). PLD produces phosphatidic acid from phosphatidylcholine, which may be essential for the formation of certain types of transport vesicles or may be constitutive vesicular transport to signal transduction pathways. PC-hydrolysing PLD is a homologue of cardiolipin synthase, phosphatidylserine synthase, bacterial PLDs, and viral proteins. Each of these appears to possess a domain duplication which is apparent by the presence of two motifs containing well-conserved histidine, lysine, and/or asparagine residues which may contribute to the active site aspartic acid. An Escherichia coli endonuclease (nuc) and similar proteins appear to be PLD homologues but possess only one of these motifs [, , , ].; GO: 0003824 catalytic activity, 0008152 metabolic process; PDB: 3HSI_C.
Probab=98.72 E-value=2.8e-09 Score=77.27 Aligned_cols=27 Identities=52% Similarity=0.940 Sum_probs=18.7
Q ss_pred cccCcceEEEEeCCeEEEccccCCCCC
Q 002219 473 LWSHHEKLVIVDYQICFIGGLDLCFGR 499 (952)
Q Consensus 473 ~~rhHrKivVIDg~vAFvGGiNL~~gR 499 (952)
.|+||+|++|||+++||+||+|||.+|
T Consensus 2 ~~~~H~K~~vvD~~~a~vGg~nl~~~~ 28 (28)
T PF00614_consen 2 GGSHHQKFVVVDDRVAFVGGANLCDGR 28 (28)
T ss_dssp TBEE---EEEETTTEEEEE---SSHHH
T ss_pred CcceeeEEEEEcCCEEEECceecCCCC
Confidence 589999999999999999999998654
No 46
>cd06883 PX_PI3K_C2 The phosphoinositide binding Phox Homology Domain of Class II Phosphoinositide 3-Kinases. The PX domain is a phosphoinositide (PI) binding module present in many proteins with diverse functions. The Phosphoinositide 3-Kinase (PI3K) family of enzymes catalyzes the phosphorylation of the 3-hydroxyl group of the inositol ring of phosphatidylinositol. PI3Ks play an important role in a variety of fundamental cellular processes, including cell motility, the Ras pathway, vesicle trafficking and secretion, immune cell activation and apoptosis. They are also involved in the regulation of clathrin-mediated membrane trafficking as well as ATP-dependent priming of neurosecretory granule exocytosis. PI3Ks are divided into three main classes (I, II, and III) based on their substrate specificity, regulation, and domain structure. Class II PI3Ks preferentially use PI as a substrate to produce PI3P, but can also phosphorylate PI4P to produce PI(3,4)P2. They function as monomers and d
Probab=98.70 E-value=9.3e-08 Score=91.26 Aligned_cols=101 Identities=19% Similarity=0.319 Sum_probs=70.4
Q ss_pred EEEeeee-ecCCCCCCcceeEEEEEEEecc--eEEEEEEehhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCc
Q 002219 46 ASIVSVS-RPDAGDISPMLLSYTIEVQYKQ--FKWKLVKKASQVFYLHFALKRRAFFEEIQEKQEQVKEWLQNLGMGDHM 122 (952)
Q Consensus 46 v~I~~~e-r~~s~~~~~~~~~Y~Iel~~g~--~~W~v~r~~~~f~~Lh~~lk~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 122 (952)
|+|.+++ |.+.. .+++|.|+++... -+|+|.|+|+||..||.+|+. ..|-
T Consensus 2 ~~i~~~~~~~~~~----~~~vY~I~V~~~~~~~~~~V~RRYseF~~Lh~~L~~-------------------~fp~---- 54 (109)
T cd06883 2 VSVFGFQKRYSPE----KYYIYVVKVTRENQTEPSFVFRTFEEFQELHNKLSL-------------------LFPS---- 54 (109)
T ss_pred cEEEEEEEEecCC----ceEEEEEEEEECCCCCeEEEEecHHHHHHHHHHHHH-------------------HCCC----
Confidence 7889998 44442 3789999999854 789999999999999998874 1110
Q ss_pred cccccCccccccccccccccccCCCCCCCCCCCCCCccccC--CCcchHHHHHHHHHHHHHHhcc-ccccchhhhheeee
Q 002219 123 AVVQEDDEGDEIAVNHDESSKKRDVPANAALPVIRPALGRQ--HSMSDRAKVAMQQYLNHFLGNM-DIVNSREVCKFLEA 199 (952)
Q Consensus 123 ~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~lp~~~~~~~~~--~~~~~r~~~~LE~YL~~lL~~~-~~~n~~~l~~Flev 199 (952)
...|. ||..+ .+++. ..+...|+.+||+||+.||..+ .++++..+.+||..
T Consensus 55 ----------------------~~lp~---lP~k~-~~~~~~~~~~~e~R~~~Le~YL~~Ll~~~~~i~~s~~v~~F~~~ 108 (109)
T cd06883 55 ----------------------LKLPS---FPARV-VLGRSHIKQVAERRKIELNSYLKSLFNASPEVAESDLVYTFFHP 108 (109)
T ss_pred ----------------------CcCCC---CCCCc-ccCccchhHHHHHHHHHHHHHHHHHHcCCHHHhcCHHHHHhcCC
Confidence 00111 33211 12221 2344455679999999999875 68899999999975
No 47
>cd06876 PX_MDM1p The phosphoinositide binding Phox Homology domain of yeast MDM1p. The PX domain is a phosphoinositide binding (PI) module present in many proteins with diverse functions such as cell signaling, vesicular trafficking, protein sorting, and lipid modification, among others. Yeast MDM1p is a filament-like protein localized in punctate structures distributed throughout the cytoplasm. It plays an important role in nuclear and mitochondrial transmission to daughter buds. Members of this subfamily show similar domain architectures as some sorting nexins (SNXs). Some members are similar to SNX19 in that they contain an N-terminal PXA domain, a central PX domain, and a C-terminal domain that is conserved in some SNXs. Others are similar to SNX13 and SNX14, which also harbor these three domains as well as a regulator of G protein signaling (RGS) domain in between the PXA and PX domains. SNXs make up the largest group among PX domain containing proteins. They are involved in regul
Probab=98.65 E-value=1.7e-07 Score=92.49 Aligned_cols=103 Identities=25% Similarity=0.361 Sum_probs=70.3
Q ss_pred CeEEEeeeeecC-CCCCCcceeEEEEEEEecc-----eEEEEEEehhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcC
Q 002219 44 PKASIVSVSRPD-AGDISPMLLSYTIEVQYKQ-----FKWKLVKKASQVFYLHFALKRRAFFEEIQEKQEQVKEWLQNLG 117 (952)
Q Consensus 44 p~v~I~~~er~~-s~~~~~~~~~Y~Iel~~g~-----~~W~v~r~~~~f~~Lh~~lk~~~~~~~~~~~~~~~~~~~~~~~ 117 (952)
++|.|.+..-.. .++ ..+++|+|+++.+. ..|+|.|||+||..||.+|+.. + ..+.
T Consensus 20 ~~i~I~~~~~~~~~~~--k~~~~Y~I~v~~~~~~~~~~~w~V~RRYseF~~Lh~~L~~~------------~----~~~~ 81 (133)
T cd06876 20 TRVSIQSYISDVEEEG--KEFVVYLIEVQRLNNDDQSSGWVVARRYSEFLELHKYLKKR------------Y----PGVL 81 (133)
T ss_pred ceEEEeeEEeeecCCC--ceEEEEEEEEEEcCCCCCcccEEEEeEhHHHHHHHHHHHHH------------C----cCCC
Confidence 578999887433 222 35899999999843 6999999999999999988730 0 0111
Q ss_pred CCCCccccccCccccccccccccccccCCCCCCCCCCCCCCcccc---CCCcchHHHHHHHHHHHHHHhccccccchhhh
Q 002219 118 MGDHMAVVQEDDEGDEIAVNHDESSKKRDVPANAALPVIRPALGR---QHSMSDRAKVAMQQYLNHFLGNMDIVNSREVC 194 (952)
Q Consensus 118 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~lp~~~~~~~~---~~~~~~r~~~~LE~YL~~lL~~~~~~n~~~l~ 194 (952)
+++ ||.-. .++. ....-..|+..||.||+.|+.++.++++..+.
T Consensus 82 ~p~--------------------------------~P~K~-~~~~~~~~~~~ie~Rr~~Le~yL~~Ll~~~~l~~s~~l~ 128 (133)
T cd06876 82 KLD--------------------------------FPQKR-KISLKYSKTLLVEERRKALEKYLQELLKIPEVCEDEEFR 128 (133)
T ss_pred CCC--------------------------------CCccc-cccCccCCHHHHHHHHHHHHHHHHHHHcCccccCChHHH
Confidence 111 22110 0111 12223344579999999999999999999999
Q ss_pred hee
Q 002219 195 KFL 197 (952)
Q Consensus 195 ~Fl 197 (952)
+||
T Consensus 129 ~FL 131 (133)
T cd06876 129 KFL 131 (133)
T ss_pred Hhh
Confidence 998
No 48
>cd06873 PX_SNX13 The phosphoinositide binding Phox Homology domain of Sorting Nexin 13. The PX domain is a phosphoinositide (PI) binding module present in many proteins with diverse functions. Sorting nexins (SNXs) make up the largest group among PX domain containing proteins. They are involved in regulating membrane traffic and protein sorting in the endosomal system. The PX domain of SNXs binds PIs and targets the protein to PI-enriched membranes. SNXs differ from each other in PI-binding specificity and affinity, and the presence of other protein-protein interaction domains, which help determine subcellular localization and specific function in the endocytic pathway. SNX13, also called RGS-PX1, contains an N-terminal PXA domain, a regulator of G protein signaling (RGS) domain, a PX domain, and a C-terminal domain that is conserved in some SNXs. It specifically binds to the stimulatory subunit of the heterotrimeric G protein G(alpha)s, serving as its GTPase activating protein, throug
Probab=98.62 E-value=1.8e-07 Score=90.78 Aligned_cols=104 Identities=19% Similarity=0.312 Sum_probs=70.3
Q ss_pred eEEEeeeeecCCCCCCcceeEEEEEEEe-----cceEEEEEEehhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCC
Q 002219 45 KASIVSVSRPDAGDISPMLLSYTIEVQY-----KQFKWKLVKKASQVFYLHFALKRRAFFEEIQEKQEQVKEWLQNLGMG 119 (952)
Q Consensus 45 ~v~I~~~er~~s~~~~~~~~~Y~Iel~~-----g~~~W~v~r~~~~f~~Lh~~lk~~~~~~~~~~~~~~~~~~~~~~~~~ 119 (952)
+|.|++++....+. ..+++|.|++.. +.-.|+|.|||+||..||.+|+. ..|..
T Consensus 6 ~~~i~~~~~~~~~~--~~y~~Y~I~v~~~~~~~~~~~~~V~RRYseF~~L~~~L~~-------------------~~p~~ 64 (120)
T cd06873 6 TAVIINTGIVKEHG--KTYAVYAISVTRIYPNGQEESWHVYRRYSDFHDLHMRLKE-------------------KFPNL 64 (120)
T ss_pred EEEEeccEEEccCC--ceEEEEEEEEEEecCCCCccceEEEeehHHHHHHHHHHHH-------------------HCcCC
Confidence 68899998755543 258999999976 45689999999999999998874 11100
Q ss_pred CCccccccCccccccccccccccccCCCCCCCCCCCCCCcccc-CCCcchHHHHHHHHHHHHHHhccccccc----hhhh
Q 002219 120 DHMAVVQEDDEGDEIAVNHDESSKKRDVPANAALPVIRPALGR-QHSMSDRAKVAMQQYLNHFLGNMDIVNS----REVC 194 (952)
Q Consensus 120 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~lp~~~~~~~~-~~~~~~r~~~~LE~YL~~lL~~~~~~n~----~~l~ 194 (952)
..|. ||.-+ .++. ....-..|+.+||+||+.||..+.++++ ..+.
T Consensus 65 --------------------------~~~~---lP~K~-~~~~~~~~~ie~Rr~~Le~fL~~ll~~~~l~~~~~~~~~l~ 114 (120)
T cd06873 65 --------------------------SKLS---FPGKK-TFNNLDRAFLEKRRKMLNQYLQSLLNPEVLDANPGLQEIVL 114 (120)
T ss_pred --------------------------CCCC---CCCCc-ccCCCCHHHHHHHHHHHHHHHHHHhCCHhhccCHHHHHHHH
Confidence 0011 22111 1111 1233334567999999999999999888 5677
Q ss_pred heeee
Q 002219 195 KFLEA 199 (952)
Q Consensus 195 ~Flev 199 (952)
.|||.
T Consensus 115 ~FL~~ 119 (120)
T cd06873 115 DFLEP 119 (120)
T ss_pred HHcCC
Confidence 78763
No 49
>cd06890 PX_Bem1p The phosphoinositide binding Phox Homology domain of Bem1p. The PX domain is a phosphoinositide (PI) binding module present in many proteins with diverse functions such as cell signaling, vesicular trafficking, protein sorting, and lipid modification, among others. Members of this subfamily bear similarity to Saccharomyces cerevisiae Bem1p, containing two Src Homology 3 (SH3) domains at the N-terminus, a central PX domain, and a C-terminal PB1 domain. Bem1p is a scaffolding protein that is critical for proper Cdc42p activation during bud formation in yeast. During budding and mating, Bem1p migrates to the plasma membrane where it can serve as an adaptor for Cdc42p and some other proteins. Bem1p also functions as an effector of the G1 cyclin Cln3p and the cyclin-dependent kinase Cdc28p in promoting vacuolar fusion. The PX domain is involved in targeting of proteins to PI-enriched membranes, and may also be involved in protein-protein interaction. The PX domain of Bem1p
Probab=98.61 E-value=2.7e-07 Score=88.48 Aligned_cols=107 Identities=25% Similarity=0.262 Sum_probs=75.4
Q ss_pred eEEEeeeeecCCCCCCcceeEEEEEEEe-cceEEEEEEehhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCcc
Q 002219 45 KASIVSVSRPDAGDISPMLLSYTIEVQY-KQFKWKLVKKASQVFYLHFALKRRAFFEEIQEKQEQVKEWLQNLGMGDHMA 123 (952)
Q Consensus 45 ~v~I~~~er~~s~~~~~~~~~Y~Iel~~-g~~~W~v~r~~~~f~~Lh~~lk~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 123 (952)
+|+|.++...++ ..+|.|+++. +.-+|.|.|+|+||..||.+|.. .+|...
T Consensus 2 ~~~V~~~~~~~~------~y~Y~i~v~~s~~~~~~v~RrY~dFy~Lh~~L~~-------------------~fp~ea--- 53 (112)
T cd06890 2 SASVESVLLEDN------RYWYRVRATLSDGKTRYLCRYYQDFYKLHIALLD-------------------LFPAEA--- 53 (112)
T ss_pred eEEEEEEEEECC------EEEEEEEEEEcCCcEEEEEEEHHHHHHHHHHHHH-------------------hCcHhh---
Confidence 478888875544 6899999999 57899999999999999998873 111100
Q ss_pred ccccCccccccccccccccccCCCCCCCCCCCCCCcccc-CCCcchHHHHHHHHHHHHHHhcc-ccccchhhhheeee
Q 002219 124 VVQEDDEGDEIAVNHDESSKKRDVPANAALPVIRPALGR-QHSMSDRAKVAMQQYLNHFLGNM-DIVNSREVCKFLEA 199 (952)
Q Consensus 124 ~~~~~~~~~~~~~~~~~~~~~~~~p~~~~lp~~~~~~~~-~~~~~~r~~~~LE~YL~~lL~~~-~~~n~~~l~~Flev 199 (952)
+ .....+.+|. ||. +.... ...+...|+..|+.||++||.++ .+.++..+.+||+.
T Consensus 54 ----------g-----~~~~~~~lP~---lP~--~~~~~~~~~~~e~R~~~L~~Yl~~Ll~~p~~i~~s~~v~~Ff~~ 111 (112)
T cd06890 54 ----------G-----RNSSKRILPY---LPG--PVTDVVNDSISLKRLNDLNEYLNELINLPAYIQTSEVVRDFFAN 111 (112)
T ss_pred ----------C-----CCCCCCcCCC---CCC--CccCcchhHHHHHHHHHHHHHHHHHHcCCHHhccCHHHHHHcCc
Confidence 0 0012344454 442 11122 34455566789999999999999 67899999999975
No 50
>cd06887 PX_p47phox The phosphoinositide binding Phox Homology domain of the p47phox subunit of NADPH oxidase. The PX domain is a phosphoinositide (PI) binding module present in many proteins with diverse functions such as cell signaling, vesicular trafficking, protein sorting, and lipid modification, among others. p47phox is a cytosolic subunit of the phagocytic NADPH oxidase complex (also called Nox2 or gp91phox), which plays a key role in the ability of phagocytes to defend against bacterial infections. NADPH oxidase catalyzes the transfer of electrons from NADPH to oxygen during phagocytosis forming superoxide and reactive oxygen species. p47phox is required for activation of NADH oxidase and plays a role in translocation. It contains an N-terminal PX domain, two Src Homology 3 (SH3) domains, and a C-terminal domain that contains PxxP motifs for binding SH3 domains. The PX domain of p47phox is unique in that it contains two distinct basic pockets on the membrane-binding surface: one
Probab=98.60 E-value=4.3e-07 Score=87.83 Aligned_cols=112 Identities=13% Similarity=0.235 Sum_probs=77.5
Q ss_pred eEEEeeee-ecCCCCCCcceeEEEEEEEe-cceEEEEEEehhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCc
Q 002219 45 KASIVSVS-RPDAGDISPMLLSYTIEVQY-KQFKWKLVKKASQVFYLHFALKRRAFFEEIQEKQEQVKEWLQNLGMGDHM 122 (952)
Q Consensus 45 ~v~I~~~e-r~~s~~~~~~~~~Y~Iel~~-g~~~W~v~r~~~~f~~Lh~~lk~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 122 (952)
.|+|++++ |.... .+++|.|++.- +.-.|+|.|+|+||..||.+|+. .+|.. .
T Consensus 3 ~~~~~~~~kr~~~~----~~y~Y~i~v~~s~~~~~~v~RrYsdF~~L~~~L~~-------------------~fp~E--a 57 (118)
T cd06887 3 HIALLGFEKRFVPS----QHYVYMFLVKWQDLSEKLVYRRFTEIYEFHKTLKE-------------------MFPIE--A 57 (118)
T ss_pred eEEEEEEEEeecCC----CcEEEEEEEEEcCCcEEEEEeeHHHHHHHHHHHHH-------------------hCCcc--c
Confidence 68999999 44332 27899999886 44579999999999999998883 23320 0
Q ss_pred cccccCccccccccccccccccCCCCCCCCCCCCCCccccCCCcchHHHHHHHHHHHHHHhcc-ccccchhhhheeeecc
Q 002219 123 AVVQEDDEGDEIAVNHDESSKKRDVPANAALPVIRPALGRQHSMSDRAKVAMQQYLNHFLGNM-DIVNSREVCKFLEASK 201 (952)
Q Consensus 123 ~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~lp~~~~~~~~~~~~~~r~~~~LE~YL~~lL~~~-~~~n~~~l~~FlevS~ 201 (952)
.. .....+.+|. ||. +.-+++ ..+...|+..||.||++||..+ .+.++..+.+||++.+
T Consensus 58 g~---------------~~~~~r~lP~---lP~-k~~~~~-~~v~e~Rr~~L~~Yl~~Ll~lp~~i~~s~~v~~Ff~~~~ 117 (118)
T cd06887 58 GD---------------INKENRIIPH---LPA-PKWFDG-QRAAENRQGTLTEYCSTLLSLPPKISRCPHVLDFFKVRP 117 (118)
T ss_pred cc---------------cCCCCCcCCC---CCC-CcccCc-chHHHHHHHHHHHHHHHHHhCCchhhCCHHHHHHhCcCC
Confidence 00 0112345555 652 122333 3667777889999999998654 3689999999998754
No 51
>cd07280 PX_YPT35 The phosphoinositide binding Phox Homology domain of the fungal protein YPT35. The PX domain is a phosphoinositide (PI) binding module present in many proteins with diverse functions such as cell signaling, vesicular trafficking, protein sorting, and lipid modification, among others. This subfamily is composed of YPT35 proteins from the fungal subkingdom Dikarya. The PX domain is involved in targeting of proteins to PI-enriched membranes, and may also be involved in protein-protein interaction. The PX domain of YPT35 binds to phosphatidylinositol 3-phosphate (PI3P). It also serves as a protein interaction domain, binding to members of the Yip1p protein family, which localize to the ER and Golgi. YPT35 is mainly associated with endosomes and together with Yip1p proteins, may be involved in a specific function in the endocytic pathway.
Probab=98.59 E-value=2.4e-07 Score=89.75 Aligned_cols=108 Identities=19% Similarity=0.167 Sum_probs=72.9
Q ss_pred eEEEeeeeecCCCCCCcceeEEEEEEEecc---eEEEEEEehhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCC
Q 002219 45 KASIVSVSRPDAGDISPMLLSYTIEVQYKQ---FKWKLVKKASQVFYLHFALKRRAFFEEIQEKQEQVKEWLQNLGMGDH 121 (952)
Q Consensus 45 ~v~I~~~er~~s~~~~~~~~~Y~Iel~~g~---~~W~v~r~~~~f~~Lh~~lk~~~~~~~~~~~~~~~~~~~~~~~~~~~ 121 (952)
.|.|++.+...+......+++|.|+++.+. -.|.|.|||+||..||.+|+. ..|..
T Consensus 4 ~i~i~~~~~~~~~~~~~~yv~Y~I~v~~~~~~~~~~~V~RRYseF~~L~~~L~~-------------------~~p~~-- 62 (120)
T cd07280 4 DVNVGDYTIVGGDTGGGAYVVWKITIETKDLIGSSIVAYKRYSEFVQLREALLD-------------------EFPRH-- 62 (120)
T ss_pred EEEcCCCeEECCCCCCCCEEEEEEEEEeCCCCCCcEEEEeeHHHHHHHHHHHHH-------------------HCccc--
Confidence 477888775544321235899999999775 799999999999999998873 11100
Q ss_pred ccccccCccccccccccccccccCCCCCCCCCCCCCCccc-----cCCCcchHHHHHHHHHHHHHHhccccccchhhhhe
Q 002219 122 MAVVQEDDEGDEIAVNHDESSKKRDVPANAALPVIRPALG-----RQHSMSDRAKVAMQQYLNHFLGNMDIVNSREVCKF 196 (952)
Q Consensus 122 ~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~lp~~~~~~~-----~~~~~~~r~~~~LE~YL~~lL~~~~~~n~~~l~~F 196 (952)
....+|. ||.-+ .++ ....+-..|+..||.||+.|+.++.++++..+.+|
T Consensus 63 ---------------------~~~~~P~---lP~K~-~~~~~~~~~~~~~ie~Rr~~Le~fL~~l~~~p~l~~s~~~~~F 117 (120)
T cd07280 63 ---------------------KRNEIPQ---LPPKV-PWYDSRVNLNKAWLEKRRRGLQYFLNCVLLNPVFGGSPVVKEF 117 (120)
T ss_pred ---------------------ccCcCCC---CCCCc-ccccccccCCHHHHHHHHHHHHHHHHHHhCCHhhccChHHHHh
Confidence 0112233 43211 111 11223334457999999999999999999999999
Q ss_pred ee
Q 002219 197 LE 198 (952)
Q Consensus 197 le 198 (952)
||
T Consensus 118 L~ 119 (120)
T cd07280 118 LL 119 (120)
T ss_pred hC
Confidence 97
No 52
>cd06869 PX_UP2_fungi The phosphoinositide binding Phox Homology domain of uncharacterized fungal proteins. The PX domain is a phosphoinositide (PI) binding module involved in targeting proteins to PI-enriched membranes. Members in this subfamily are uncharacterized fungal proteins containing a PX domain. PX domain harboring proteins have been implicated in highly diverse functions such as cell signaling, vesicular trafficking, protein sorting, lipid modification, cell polarity and division, activation of T and B cells, and cell survival. In addition to protein-lipid interaction, the PX domain may also be involved in protein-protein interaction.
Probab=98.58 E-value=3.5e-07 Score=88.70 Aligned_cols=83 Identities=20% Similarity=0.351 Sum_probs=63.0
Q ss_pred ceeEEEEEEEecce---EEEEEEehhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCccccccCcccccccccc
Q 002219 62 MLLSYTIEVQYKQF---KWKLVKKASQVFYLHFALKRRAFFEEIQEKQEQVKEWLQNLGMGDHMAVVQEDDEGDEIAVNH 138 (952)
Q Consensus 62 ~~~~Y~Iel~~g~~---~W~v~r~~~~f~~Lh~~lk~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 138 (952)
.+++|.|+++.+.. .|+|.|+|+||..||.+|+. .+|-
T Consensus 32 ~~~~Y~I~V~~~~~~~~~~~V~RRYsdF~~L~~~L~~-------------------~fp~-------------------- 72 (119)
T cd06869 32 HHYEFIIRVRREGEEYRTIYVARRYSDFKKLHHDLKK-------------------EFPG-------------------- 72 (119)
T ss_pred ceEEEEEEEEECCCCCCceEEEeeHHHHHHHHHHHHH-------------------HCcC--------------------
Confidence 37899999999987 99999999999999998873 1210
Q ss_pred ccccccCCCCCCCCCCCCCCccccCCCcchHHHHHHHHHHHHHHhccccccchhhhheee
Q 002219 139 DESSKKRDVPANAALPVIRPALGRQHSMSDRAKVAMQQYLNHFLGNMDIVNSREVCKFLE 198 (952)
Q Consensus 139 ~~~~~~~~~p~~~~lp~~~~~~~~~~~~~~r~~~~LE~YL~~lL~~~~~~n~~~l~~Fle 198 (952)
..+|. ||.-.. ...++++.+||+||+.|+..+.++++..+.+||.
T Consensus 73 ------~~lP~---lP~K~~------~~~E~Rr~~Le~yL~~Ll~~p~l~~s~~~~~FL~ 117 (119)
T cd06869 73 ------KKLPK---LPHKDK------LPREKLRLSLRQYLRSLLKDPEVAHSSILQEFLT 117 (119)
T ss_pred ------CCCCC---CcCCch------hHHHHHHHHHHHHHHHHhcChhhhcChHHHHhhC
Confidence 01111 332111 2334666799999999999999999999999985
No 53
>cd06884 PX_PI3K_C2_68D The phosphoinositide binding Phox Homology Domain of Class II Phosphoinositide 3-Kinases similar to the Drosophila PI3K_68D protein. The PX domain is a phosphoinositide (PI) binding module present in many proteins with diverse functions. The Phosphoinositide 3-Kinase (PI3K) family of enzymes catalyzes the phosphorylation of the 3-hydroxyl group of the inositol ring of phosphatidylinositol. PI3Ks play an important role in a variety of fundamental cellular processes, including cell motility, the Ras pathway, vesicle trafficking and secretion, immune cell activation and apoptosis. PI3Ks are divided into three main classes (I, II, and III) based on their substrate specificity, regulation, and domain structure. Class II PI3Ks preferentially use PI as a substrate to produce PI3P, but can also phosphorylate PI4P to produce PI(3,4)P2. They function as monomers and do not associate with any regulatory subunits. Class II enzymes contain an N-terminal Ras binding domain, a
Probab=98.57 E-value=3.5e-07 Score=87.64 Aligned_cols=101 Identities=21% Similarity=0.334 Sum_probs=73.0
Q ss_pred eEEEeeee-ecCCCCCCcceeEEEEEEE--ecceEEEEEEehhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCC
Q 002219 45 KASIVSVS-RPDAGDISPMLLSYTIEVQ--YKQFKWKLVKKASQVFYLHFALKRRAFFEEIQEKQEQVKEWLQNLGMGDH 121 (952)
Q Consensus 45 ~v~I~~~e-r~~s~~~~~~~~~Y~Iel~--~g~~~W~v~r~~~~f~~Lh~~lk~~~~~~~~~~~~~~~~~~~~~~~~~~~ 121 (952)
.|+|.+++ |.+.. .+++|.|+++ -+.-.|.|.|+|+||..||.+|+. ..|+..
T Consensus 3 ~v~v~~~~kr~~~~----~~yvY~I~V~~~~~~~~~~V~RrYseF~~Lh~~L~~-------------------~FP~~~- 58 (111)
T cd06884 3 RVTVVGFQKRYDPE----KYYVYVVEVTRENQASPQHVFRTYKEFLELYQKLCR-------------------KFPLAK- 58 (111)
T ss_pred EEEEEEEEEEecCC----CeEEEEEEEEEcCCCceEEEEeEHHHHHHHHHHHHH-------------------HCCCCC-
Confidence 68999999 45432 3789999997 555789999999999999998874 333210
Q ss_pred ccccccCccccccccccccccccCCCCCCCCCCCCCCcccc--CCCcchHHHHHHHHHHHHHHhc-cccccchhhhheee
Q 002219 122 MAVVQEDDEGDEIAVNHDESSKKRDVPANAALPVIRPALGR--QHSMSDRAKVAMQQYLNHFLGN-MDIVNSREVCKFLE 198 (952)
Q Consensus 122 ~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~lp~~~~~~~~--~~~~~~r~~~~LE~YL~~lL~~-~~~~n~~~l~~Fle 198 (952)
.|. ||.. ..+++ ...+.++|+..||.||+.||.. +.+.++.-++.||+
T Consensus 59 -------------------------lp~---LP~k-~~~~~~~~~~v~e~R~~~L~~Yl~~Ll~~~~~is~~~~v~~FF~ 109 (111)
T cd06884 59 -------------------------LHP---LSTG-SHVGRSNIKSVAEKRKQDIQQFLNSLFKMAEEVSHSDLVYTFFH 109 (111)
T ss_pred -------------------------CCC---CCCc-eeecCCcchHHHHHHHHHHHHHHHHHHcCCHHHhcChHHHHhcC
Confidence 111 4432 12332 2356667778999999999986 45789999999986
No 54
>cd01233 Unc104 Unc-104 pleckstrin homology (PH) domain. Unc-104 pleckstrin homology (PH) domain. Unc-104 is a kinesin-like protein containing an N-terminal kinesin catalytic domain, followed by a forkhead associated domain with a C-terminal PH domain. These proteins are responsible for the transport of membrane vesicles along microtubules. The mechanism involves the binding of the PH domain to phosphatidiylinositol (4,5) P2-containing liposomes.
Probab=98.56 E-value=5e-07 Score=84.70 Aligned_cols=95 Identities=18% Similarity=0.317 Sum_probs=69.6
Q ss_pred cceeEEEeeecCCccCCCCCCcccccCCCccccCCcceEEEEEeCCeEEEEeCCCCCCccEEEEEeCCCCCCCCCCCccc
Q 002219 212 LKEDYVMAKHLPKISRNDDSRKCCCCPLFTCCNDNWQKVWAVLKPGFLALLADPFDTKPMDIIVFDVLPASDGNGEGRVS 291 (952)
Q Consensus 212 gKEG~l~kr~~~~~~G~~~~~~~~~~~~~~~~~~rw~kRWfvVKdSfL~yv~d~~~~~~~~v~l~D~~~~~~~~~~~~~~ 291 (952)
.|+|||.|+. | . ...|++|||||++++|.|+++..+..+..+|.+.. ..+.
T Consensus 3 ~k~G~L~Kkg-----~----------~-----~k~WkkRwfvL~~~~L~yyk~~~~~~~~~~I~L~~---------~~v~ 53 (100)
T cd01233 3 SKKGYLNFPE-----E----------T-----NSGWTRRFVVVRRPYLHIYRSDKDPVERGVINLST---------ARVE 53 (100)
T ss_pred ceeEEEEeeC-----C----------C-----CCCcEEEEEEEECCEEEEEccCCCccEeeEEEecc---------cEEE
Confidence 3899999872 1 0 14799999999999999999877777777776652 1121
Q ss_pred ccccccccCCcceeEEEEeCceEEEEEecchhhHHHHHHHHHhc
Q 002219 292 LATEVKERNPLRHAFKVTCGVRSIRLRTRTGAKVRDWVAAINDA 335 (952)
Q Consensus 292 ~~~~~~~~~~~~~~~~i~~~~r~l~l~~~s~~~~~~w~~~i~~~ 335 (952)
............+.|.|...+|.+.|.|.|..++.+|..+|+..
T Consensus 54 ~~~~~~~~~~~~~~F~I~t~~rt~~~~A~s~~e~~~Wi~ai~~~ 97 (100)
T cd01233 54 HSEDQAAMVKGPNTFAVCTKHRGYLFQALSDKEMIDWLYALNPL 97 (100)
T ss_pred EccchhhhcCCCcEEEEECCCCEEEEEcCCHHHHHHHHHHhhhh
Confidence 11110001123578999999999999999999999999999764
No 55
>cd06093 PX_domain The Phox Homology domain, a phosphoinositide binding module. The PX domain is a phosphoinositide (PI) binding module involved in targeting proteins to membranes. Proteins containing PX domains interact with PIs and have been implicated in highly diverse functions such as cell signaling, vesicular trafficking, protein sorting, lipid modification, cell polarity and division, activation of T and B cells, and cell survival. Many members of this superfamily bind phosphatidylinositol-3-phosphate (PI3P) but in some cases, other PIs such as PI4P or PI(3,4)P2, among others, are the preferred substrates. In addition to protein-lipid interaction, the PX domain may also be involved in protein-protein interaction, as in the cases of p40phox, p47phox, and some sorting nexins (SNXs). The PX domain is conserved from yeast to humans and is found in more than 100 proteins. The majority of PX domain-containing proteins are SNXs, which play important roles in endosomal sorting.
Probab=98.54 E-value=4.4e-07 Score=83.89 Aligned_cols=102 Identities=26% Similarity=0.438 Sum_probs=71.2
Q ss_pred EEEeeeeecCCCCCCcceeEEEEEEEecc-eEEEEEEehhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCccc
Q 002219 46 ASIVSVSRPDAGDISPMLLSYTIEVQYKQ-FKWKLVKKASQVFYLHFALKRRAFFEEIQEKQEQVKEWLQNLGMGDHMAV 124 (952)
Q Consensus 46 v~I~~~er~~s~~~~~~~~~Y~Iel~~g~-~~W~v~r~~~~f~~Lh~~lk~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 124 (952)
|+|.+.+...++ ...+++|.|+++++. -.|.|.|+|+||..||..|+. ..+
T Consensus 2 i~I~~~~~~~~~--~~~~~~Y~i~v~~~~~~~~~v~rrysdF~~L~~~L~~-------------------~~~------- 53 (106)
T cd06093 2 VSIPDYEKVKDG--GKKYVVYIIEVTTQGGEEWTVYRRYSDFEELHEKLKK-------------------KFP------- 53 (106)
T ss_pred EEeCCceEEcCC--CCCEEEEEEEEEECCCCeEEEEeehHHHHHHHHHHHH-------------------HCC-------
Confidence 566666643211 124789999999998 899999999999999998873 111
Q ss_pred cccCccccccccccccccccCCCCCCCCCCCCCCcccc-CCCcchHHHHHHHHHHHHHHhccccccchhhhheee
Q 002219 125 VQEDDEGDEIAVNHDESSKKRDVPANAALPVIRPALGR-QHSMSDRAKVAMQQYLNHFLGNMDIVNSREVCKFLE 198 (952)
Q Consensus 125 ~~~~~~~~~~~~~~~~~~~~~~~p~~~~lp~~~~~~~~-~~~~~~r~~~~LE~YL~~lL~~~~~~n~~~l~~Fle 198 (952)
...+|+ ||..+ ..++ .......++..||.||+.|+.++.+.++..+.+||+
T Consensus 54 -------------------~~~~p~---lP~k~-~~~~~~~~~~~~R~~~L~~yl~~l~~~~~~~~~~~~~~Fl~ 105 (106)
T cd06093 54 -------------------GVILPP---LPPKK-LFGNLDPEFIEERRKQLEQYLQSLLNHPELRNSEELKEFLE 105 (106)
T ss_pred -------------------CCccCC---CCCCc-ccccCCHHHHHHHHHHHHHHHHHHhcCcccccChHHHHHhC
Confidence 012233 44321 1111 223344556799999999999999999999999986
No 56
>COG1502 Cls Phosphatidylserine/phosphatidylglycerophosphate/cardiolipin synthases and related enzymes [Lipid metabolism]
Probab=98.53 E-value=5e-07 Score=104.70 Aligned_cols=145 Identities=23% Similarity=0.298 Sum_probs=100.3
Q ss_pred EEEEecHHHH---------HHHHHHHHHhcccEEEEeeecCCceeEEEcCCCCchhHHHHHHHHHHhhCCcEEEEEEccc
Q 002219 365 AQWFVDGKAA---------FEAIASSIEDAKSEIFICGWWLCPELYLRRPFHNHASSRLDALLEAKAKQGVQIYILLYKE 435 (952)
Q Consensus 365 v~~lvdG~~~---------f~al~~aI~~Ak~~I~I~~W~lsPe~Yl~rp~~d~~~~rL~~~L~~aA~rGVkVrILl~d~ 435 (952)
++++.+|+.. -..++.+|.+|+++|+|+. .|+++ +..+.++|..++++||+|+|++.+.
T Consensus 253 ~~~~~~~P~~~~~~~~~~~~~~~~~~i~~A~~~i~i~~------pYf~~------~~~~~~al~~a~~~Gv~V~ii~~~~ 320 (438)
T COG1502 253 VQVLSSGPDKGLGSELIELNRLLLKAINSARESILIAT------PYFVP------DRELLAALKAAARRGVDVRIIIPSL 320 (438)
T ss_pred eEEEecCCccccchhhhhHHHHHHHHHHhhceEEEEEc------CCcCC------CHHHHHHHHHHHhcCCEEEEEeCCC
Confidence 5666666543 3679999999999999963 37765 5778899999999999999998521
Q ss_pred --hhhhhhc-chhhhHHHHhccCCCeEEEEcCCCcCCCcccccCcceEEEEeCCeEEEccccCCCCCcCCCCCCCCCCCC
Q 002219 436 --VALALKI-NSVYSKRKLLSIHENVRVLRYPDHFASGVYLWSHHEKLVIVDYQICFIGGLDLCFGRYDTFEHKIGDNPP 512 (952)
Q Consensus 436 --~~~~l~~-~s~~~k~~L~~l~~gI~V~r~P~~~~~~~~~~rhHrKivVIDg~vAFvGGiNL~~gRwDt~~H~l~D~~~ 512 (952)
....... ........+. ..|++++.++.. +..|.|++|||+++++|||.|+...-+
T Consensus 321 ~~~d~~~~~~~~~~~~~~l~--~~gv~i~~~~~g-------~~lH~K~~iiD~~~~~vGS~N~~~rS~------------ 379 (438)
T COG1502 321 GANDSAIVHAAYRAYLKELL--EAGVKVYEYPGG-------AFLHSKVMIIDDRTVLVGSANLDPRSL------------ 379 (438)
T ss_pred CCCChHHHHHHHHHHHHHHH--HhCCEEEEecCC-------CcceeeEEEEcCCEEEEeCCcCCHhHH------------
Confidence 1111100 0000112222 379999887641 357999999999999999999942111
Q ss_pred CcCCCCCCCCCCCCCCCCccccccccccCCCCCCCCeEEEEEEEECh-HHHHHHHHHHHHHHhhh
Q 002219 513 LIWPGKDYYNPRESEPNSWEDTMRDELDRGKYPRMPWHDIHCALWGP-PCRDVARHFVQRWNYAK 576 (952)
Q Consensus 513 ~~~~G~dY~n~~~~d~~~~~~~~~d~~dr~~~pr~pWhDv~~~v~Gp-aa~dl~~~F~qrWn~~~ 576 (952)
+.| ..+.+.|+.+ .+.++.+.|...|....
T Consensus 380 -------~lN---------------------------~E~~~~i~d~~~~~~~~~~~~~~~~~s~ 410 (438)
T COG1502 380 -------RLN---------------------------FEVGLVIEDPELALKLRREFEADLARSK 410 (438)
T ss_pred -------HHh---------------------------hhheeEEeCHHHHHHHHHHHHHHHHHHh
Confidence 011 2457888888 68889999997776654
No 57
>smart00312 PX PhoX homologous domain, present in p47phox and p40phox. Eukaryotic domain of unknown function present in phox proteins, PLD isoforms, a PI3K isoform.
Probab=98.53 E-value=2.8e-07 Score=85.92 Aligned_cols=87 Identities=25% Similarity=0.473 Sum_probs=57.5
Q ss_pred eeEEEEEEEe--cceEEEEEEehhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCccccccCcccccccccccc
Q 002219 63 LLSYTIEVQY--KQFKWKLVKKASQVFYLHFALKRRAFFEEIQEKQEQVKEWLQNLGMGDHMAVVQEDDEGDEIAVNHDE 140 (952)
Q Consensus 63 ~~~Y~Iel~~--g~~~W~v~r~~~~f~~Lh~~lk~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 140 (952)
.++|+|++++ +..+|+|.|+|+||..||.+|+... ...
T Consensus 12 ~~~~~~~v~~~~~~~~~~v~RRysdF~~L~~~L~~~~----------------~~~------------------------ 51 (105)
T smart00312 12 HYYYVIEIETKTGLEEWTVSRRYSDFLELHSKLKKHF----------------PRR------------------------ 51 (105)
T ss_pred eEEEEEEEEECCCCceEEEEEEHHHHHHHHHHHHHHC----------------cCC------------------------
Confidence 3455555555 4579999999999999999887310 001
Q ss_pred ccccCCCCCCCCCCCCCCccc----cCCCcchHHHHHHHHHHHHHHhcccccc-chhhhheee
Q 002219 141 SSKKRDVPANAALPVIRPALG----RQHSMSDRAKVAMQQYLNHFLGNMDIVN-SREVCKFLE 198 (952)
Q Consensus 141 ~~~~~~~p~~~~lp~~~~~~~----~~~~~~~r~~~~LE~YL~~lL~~~~~~n-~~~l~~Fle 198 (952)
.+|. ||.-. .++ ........++..||+||+.|+..+.+++ +..+.+||+
T Consensus 52 -----~lP~---lP~k~-~~~~~~~~~~~~i~~R~~~L~~yL~~l~~~~~~~~~s~~~~~Fl~ 105 (105)
T smart00312 52 -----ILPP---LPPKK-LFGRLNNFSEEFIEKRRRGLERYLQSLLNHPELINESEVVLSFLE 105 (105)
T ss_pred -----CCCC---CCCch-hcccCCcCCHHHHHHHHHHHHHHHHHHHcCHhhhccChHHHHhcC
Confidence 1111 33211 011 0122334556799999999999999998 899999986
No 58
>KOG3603 consensus Predicted phospholipase D [General function prediction only]
Probab=98.52 E-value=9.8e-07 Score=99.88 Aligned_cols=163 Identities=23% Similarity=0.264 Sum_probs=107.9
Q ss_pred CCCceEEEeecCCcccCCCcc-cH---HHHHHHHHHHHHhccCeEEEEeeeeccCCCCCh---hHHHHHHHHHHHHHHHH
Q 002219 740 RASCRCQIIRSVSQWSAGTSQ-LE---ESIHCAYCSLIEKAEHFIYIENQFFISGLSGDE---IIRNRVLESLYRRILRA 812 (952)
Q Consensus 740 ~~~~~vQilRS~~~wS~G~~~-~E---~sI~~ayl~~I~~A~~~IYIEnqyFis~~~~~~---~v~n~I~~AL~~RI~~A 812 (952)
..+|..+|+-|.+. |... .+ .+..+|++.+|.+|+..|+|..-| .+-...+- .-.-.-++.+.++++..
T Consensus 47 ~~~C~~~vvESIP~---gl~f~~~t~~~sT~eaW~~Ll~sA~~eldIas~y-wsL~~~d~~~~dsSt~~G~~vy~~L~~~ 122 (456)
T KOG3603|consen 47 GDTCKLVLVESIPA---GLTFPDASPFLSTKEAWLELLSTAQEELDIASFY-WSLTGKDTGVVDSSTQYGEQVYNTLLAL 122 (456)
T ss_pred cCceeEEEEecccc---cCcCcccCCCccHHHHHHHHhhccceEEEEEEEe-eccccceeccCCCcchHHHHHHHHHHHh
Confidence 35799999999986 2222 12 378899999999999999999844 44321111 00123488888888898
Q ss_pred HHcCCceEEEEEecCCCCCCCCCCCCCchhHHHHHHHHHHHHHhhHHHHHHHHHHhcCCCcccccccccccccccccCCC
Q 002219 813 YNEKKCFRVIIVIPLLPGFQGGVDDGGAASVRAIMHWQYRTICRGQNSILHNLYALLGPKTHDYISFYGLRAYGRLFEDG 892 (952)
Q Consensus 813 ~~~g~~vrV~IvlPl~pgf~g~~~d~~~~~~r~i~~~qy~ti~rg~~si~~~L~~~~Gv~~~~Yi~f~~lr~~~~~~~~g 892 (952)
+++| +.|.|....-|+ +. ++ +. +..|.+ .|..-..=|.+- ++. |
T Consensus 123 ~~~g--IsiriA~~~p~~--~~-~~-----~d-----------------~~~Le~-~Gaa~vr~id~~------~l~-g- 166 (456)
T KOG3603|consen 123 AKSG--VKIRIAQSYPSG--GP-PN-----AD-----------------LQVLES-LGLAQVRSIDMN------RLT-G- 166 (456)
T ss_pred ccCC--eEEEEEeecCCC--CC-Cc-----cc-----------------HHHHHh-CCCceEEeeccc------ccc-c-
Confidence 8888 444444443333 11 11 00 123444 452211112121 111 1
Q ss_pred CcccccceeeeeEEEEeCcEEEEecccCCcCccCCCCCcceEEEEE-chhhHHHhhhc
Q 002219 893 PVATSQVYVHSKVMIIDDSIALIGSANINDRSLLGSRDSEVSVGLY-LFILRWELTDL 949 (952)
Q Consensus 893 ~~~te~iyvHSKlmIVDD~~~iIGSANin~RSm~G~rDsEi~v~i~-d~~~~~~~~~~ 949 (952)
-.-+|+|..+||+....+||||||.||+ +.=-|++|+|+ .|.++.+|+++
T Consensus 167 -----~GvlHtKf~vvD~khfylGSaNfDWrSl--TqvkElGv~v~NCpclakDL~ki 217 (456)
T KOG3603|consen 167 -----GGVLHTKFWVVDIKHFYLGSANFDWRSL--TQVKELGVVVRNCPCLAKDLKKI 217 (456)
T ss_pred -----CceEEEEEEEEecceEEEeccccchhhc--cceeEeeeEEecChhHHHHHHHH
Confidence 2469999999999999999999999999 88899999998 68899988865
No 59
>cd01238 PH_Tec Tec pleckstrin homology (PH) domain. Tec pleckstrin homology (PH) domain. Proteins in the Tec family of cytoplasmic protein tyrosine kinases that includes Bruton's tyrosine kinase (BTK), BMX, IL2-inducible T-cell kinase (Itk) and Tec. These proteins generally have an N-terminal PH domain, followed by a Tek homology (TH) domain, a SH3 domain, a SH2 domain and a kinase domain. Tec PH domains tether these proteins to membranes following the activation of PI3K and its subsequent phosphorylation of phosphoinositides. The importance of PH domain membrane anchoring is confirmed by the discovery of a mutation of a critical arginine residue in the BTK PH domain, which causes X-linked agammaglobulinemia (XLA) in humans and a related disorder is mice. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few dis
Probab=98.51 E-value=7.5e-07 Score=84.51 Aligned_cols=99 Identities=15% Similarity=0.214 Sum_probs=67.8
Q ss_pred ceeEEEeeecCCccCCCCCCcccccCCCccccCCcceEEEEEeCCeEEEEeCCCC--CCccEEEEEeCCCCCCCCCCCcc
Q 002219 213 KEDYVMAKHLPKISRNDDSRKCCCCPLFTCCNDNWQKVWAVLKPGFLALLADPFD--TKPMDIIVFDVLPASDGNGEGRV 290 (952)
Q Consensus 213 KEG~l~kr~~~~~~G~~~~~~~~~~~~~~~~~~rw~kRWfvVKdSfL~yv~d~~~--~~~~~v~l~D~~~~~~~~~~~~~ 290 (952)
|||||.||+..+. ..+...|++|||||+++.|.|++++.+ +.++.+|-+..-.. +
T Consensus 2 k~g~l~Kr~~~~~---------------~~~~~nwKkRwFvL~~~~L~Yyk~~~~~~~~~kG~I~L~~~~~--------v 58 (106)
T cd01238 2 LESILVKRSQQKK---------------KTSPLNYKERLFVLTKSKLSYYEGDFEKRGSKKGSIDLSKIKC--------V 58 (106)
T ss_pred cceeeeeeccCCC---------------CCCCCCceeEEEEEcCCEEEEECCCcccccCcceeEECCcceE--------E
Confidence 8999999852111 112257999999999999999988755 36666665543110 0
Q ss_pred cccccccc---cCCcceeEEEEeCceEEEEEecchhhHHHHHHHHHh
Q 002219 291 SLATEVKE---RNPLRHAFKVTCGVRSIRLRTRTGAKVRDWVAAIND 334 (952)
Q Consensus 291 ~~~~~~~~---~~~~~~~~~i~~~~r~l~l~~~s~~~~~~w~~~i~~ 334 (952)
.....-.. .....+.|+|....|.+-+.|.+..+..+|+.+|+.
T Consensus 59 e~~~~~~~~~~~~~~~~~F~i~t~~r~~yl~A~s~~er~~WI~ai~~ 105 (106)
T cd01238 59 ETVKPEKNPPIPERFKYPFQVVHDEGTLYVFAPTEELRKRWIKALKQ 105 (106)
T ss_pred EEecCCcCcccccccCccEEEEeCCCeEEEEcCCHHHHHHHHHHHHh
Confidence 00000000 001357899999999999999999999999999975
No 60
>cd06888 PX_FISH The phosphoinositide binding Phox Homology domain of Five SH protein. The PX domain is a phosphoinositide (PI) binding module present in many proteins with diverse functions such as cell signaling, vesicular trafficking, protein sorting, and lipid modification, among others. Five SH (FISH), also called Tks5, is a scaffolding protein and Src substrate that is localized in podosomes, which are electron-dense structures found in Src-transformed fibroblasts, osteoclasts, macrophages, and some invasive cancer cells. FISH contains an N-terminal PX domain and five Src homology 3 (SH3) domains. FISH binds and regulates some members of the ADAMs family of transmembrane metalloproteases, which function as sheddases and mediators of cell and matrix interactions. It is required for podosome formation, degradation of the extracellular matrix, and cancer cell invasion. This subfamily also includes proteins with a different number of SH3 domains than FISH, such as Tks4, which contains
Probab=98.47 E-value=1.4e-06 Score=84.51 Aligned_cols=112 Identities=18% Similarity=0.278 Sum_probs=76.6
Q ss_pred CeEEEeeee-ecCCCCCCcceeEEEEEEEecc-eEEEEEEehhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCC
Q 002219 44 PKASIVSVS-RPDAGDISPMLLSYTIEVQYKQ-FKWKLVKKASQVFYLHFALKRRAFFEEIQEKQEQVKEWLQNLGMGDH 121 (952)
Q Consensus 44 p~v~I~~~e-r~~s~~~~~~~~~Y~Iel~~g~-~~W~v~r~~~~f~~Lh~~lk~~~~~~~~~~~~~~~~~~~~~~~~~~~ 121 (952)
..|+|+++| |..-. .+.+|.|+++-.+ -.|.|.|+|+||..||.+|+. .+|...
T Consensus 2 ~~~~v~~~ekr~~~~----k~y~Y~i~V~~~dg~~~~v~RrYs~F~~Lh~~L~~-------------------~FP~ea- 57 (119)
T cd06888 2 KDVKVIDVEKRRAPS----KHYVYIINVTWSDGSSNVIYRRYSKFFDLQMQLLD-------------------KFPIEG- 57 (119)
T ss_pred eeEEEEEEEEEecCC----CcEEEEEEEEEcCCCEEEEEEeHHHHHHHHHHHHH-------------------hCchhh-
Confidence 368999999 44322 2679999998863 479999999999999998883 233100
Q ss_pred ccccccCccccccccccccccccCCCCCCCCCCCCCCccccC--CCcchHHHHHHHHHHHHHHhcccc-ccchhhhheee
Q 002219 122 MAVVQEDDEGDEIAVNHDESSKKRDVPANAALPVIRPALGRQ--HSMSDRAKVAMQQYLNHFLGNMDI-VNSREVCKFLE 198 (952)
Q Consensus 122 ~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~lp~~~~~~~~~--~~~~~r~~~~LE~YL~~lL~~~~~-~n~~~l~~Fle 198 (952)
+ ......|.+|. ||.- ...++. ..+..+|+..|+.||++|+..+.. ..+..++.||+
T Consensus 58 ------------g----~~~~~~r~lP~---lP~k-~~~g~s~~~~~~e~R~~~L~~Yl~~Ll~lp~~Is~~~~v~~FF~ 117 (119)
T cd06888 58 ------------G----QKDPSQRIIPF---LPGK-ILFRRSHIRDVAVKRLKPIDEYCKALVRLPPHISQCDEVLRFFE 117 (119)
T ss_pred ------------c----cCCCCccccCC---CCCC-cccCcchhHHHHHHHHHHHHHHHHHHHcCCceeecCHHHHHhcC
Confidence 0 00112345666 5531 123332 236677778999999999987664 59999999997
Q ss_pred e
Q 002219 199 A 199 (952)
Q Consensus 199 v 199 (952)
.
T Consensus 118 p 118 (119)
T cd06888 118 A 118 (119)
T ss_pred C
Confidence 4
No 61
>cd01260 PH_CNK Connector enhancer of KSR (Kinase suppressor of ras) (CNK) pleckstrin homology (PH) domain. Connector enhancer of KSR (Kinase suppressor of ras) (CNK) pleckstrin homology (PH) domain. CNK is believed to regulate the activity and the subcellular localization of RAS activated RAF. CNK is composed of N-terminal SAM and PDZ domains along with a central or C-terminal PH domain. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains. PH domains are found in cellular signaling proteins such as serine/threonine kinase, tyrosine kinsases, regulators of G-proteins, endocytotic GTPAses, adaptors, a well as cytoskelet
Probab=98.46 E-value=1.5e-06 Score=80.40 Aligned_cols=93 Identities=24% Similarity=0.355 Sum_probs=71.0
Q ss_pred ceeEEEeeecCCccCCCCCCcccccCCCccccCCcceEEEEEeCCeEEEEeCCCCCCccEEEEEeCCCCCCCCCCCcccc
Q 002219 213 KEDYVMAKHLPKISRNDDSRKCCCCPLFTCCNDNWQKVWAVLKPGFLALLADPFDTKPMDIIVFDVLPASDGNGEGRVSL 292 (952)
Q Consensus 213 KEG~l~kr~~~~~~G~~~~~~~~~~~~~~~~~~rw~kRWfvVKdSfL~yv~d~~~~~~~~v~l~D~~~~~~~~~~~~~~~ 292 (952)
.||+|.++... | + + ....|++|||||+++.|.|++++.+..+..+|.+.. ..+..
T Consensus 2 ~~GwL~kk~~~---~----------g-~--~~k~WkkrwfvL~~~~L~yyk~~~~~~~~~~I~L~~---------~~v~~ 56 (96)
T cd01260 2 CDGWLWKRKKP---G----------G-F--MGQKWARRWFVLKGTTLYWYRSKQDEKAEGLIFLSG---------FTIES 56 (96)
T ss_pred ceeEEEEecCC---C----------C-c--cccCceeEEEEEECCEEEEECCCCCCccceEEEccC---------CEEEE
Confidence 69999987421 1 0 0 115799999999999999999998888988887764 12322
Q ss_pred cccccccCCcceeEEEEeCc-eEEEEEecchhhHHHHHHHHHh
Q 002219 293 ATEVKERNPLRHAFKVTCGV-RSIRLRTRTGAKVRDWVAAIND 334 (952)
Q Consensus 293 ~~~~~~~~~~~~~~~i~~~~-r~l~l~~~s~~~~~~w~~~i~~ 334 (952)
.. + ....+.|.|...+ |.+.|.|.|...+.+|+.+|..
T Consensus 57 ~~---~-~~k~~~F~I~~~~~~~~~f~a~s~~e~~~Wi~ai~~ 95 (96)
T cd01260 57 AK---E-VKKKYAFKVCHPVYKSFYFAAETLDDLSQWVNHLIT 95 (96)
T ss_pred ch---h-cCCceEEEECCCCCcEEEEEeCCHHHHHHHHHHHHh
Confidence 21 1 2246789998777 9999999999999999999975
No 62
>cd06886 PX_SNX27 The phosphoinositide binding Phox Homology domain of Sorting Nexin 27. The PX domain is a phosphoinositide (PI) binding module present in many proteins with diverse functions. Sorting nexins (SNXs) make up the largest group among PX domain containing proteins. They are involved in regulating membrane traffic and protein sorting in the endosomal system. The PX domain of SNXs binds PIs and targets the protein to PI-enriched membranes. SNXs differ from each other in PI-binding specificity and affinity, and the presence of other protein-protein interaction domains, which help determine subcellular localization and specific function in the endocytic pathway. SNX27 contains an N-terminal PDZ domain followed by a PX domain and a Ras-Associated (RA) domain. It binds G protein-gated potassium (Kir3) channels, which play a role in neuronal excitability control, through its PDZ domain. SNX27 downregulates Kir3 channels by promoting their movement in the endosome, reducing surface
Probab=98.42 E-value=8e-07 Score=84.47 Aligned_cols=98 Identities=20% Similarity=0.312 Sum_probs=66.0
Q ss_pred eEEEeeeee-cCCCCCCcceeEEEEEEEecceEEEEEEehhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCcc
Q 002219 45 KASIVSVSR-PDAGDISPMLLSYTIEVQYKQFKWKLVKKASQVFYLHFALKRRAFFEEIQEKQEQVKEWLQNLGMGDHMA 123 (952)
Q Consensus 45 ~v~I~~~er-~~s~~~~~~~~~Y~Iel~~g~~~W~v~r~~~~f~~Lh~~lk~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 123 (952)
+|.|++++. .+.+ ..+++|.|+++ | .|+|.|||+||..||.+|+.. .....+
T Consensus 5 ~i~Ip~~~~~~~~~---~~yvvY~I~~~-~--~~~v~rRyseF~~L~~~L~~~----------------~~~~~~----- 57 (106)
T cd06886 5 PISIPDYKHVEQNG---EKFVVYNIYMA-G--RQLCSRRYREFANLHQNLKKE----------------FPDFQF----- 57 (106)
T ss_pred eEecCCcceEcCCC---CcEEEEEEEEc-C--CEEEEechHHHHHHHHHHHHH----------------cCCCCC-----
Confidence 567777652 2222 25899999987 5 799999999999999988731 001111
Q ss_pred ccccCccccccccccccccccCCCCCCCCCCCCCCccc-cCCCcchHHHHHHHHHHHHHHhccccccchhhhheee
Q 002219 124 VVQEDDEGDEIAVNHDESSKKRDVPANAALPVIRPALG-RQHSMSDRAKVAMQQYLNHFLGNMDIVNSREVCKFLE 198 (952)
Q Consensus 124 ~~~~~~~~~~~~~~~~~~~~~~~~p~~~~lp~~~~~~~-~~~~~~~r~~~~LE~YL~~lL~~~~~~n~~~l~~Fle 198 (952)
|. +|.-+ .+. ..+.+..| |..||.||+.++.++.++++..+.+||.
T Consensus 58 ------------------------p~---lP~K~-~~~~~~~~ie~R-r~~Le~fL~~l~~~p~l~~s~~~~~FL~ 104 (106)
T cd06886 58 ------------------------PK---LPGKW-PFSLSEQQLDAR-RRGLEQYLEKVCSIRVIGESDIMQDFLS 104 (106)
T ss_pred ------------------------CC---CCCCC-cCCCCHHHHHHH-HHHHHHHHHHHhcCcccccCHHHHHHhc
Confidence 11 22211 011 11234445 5799999999999999999999999985
No 63
>smart00155 PLDc Phospholipase D. Active site motifs. Phosphatidylcholine-hydrolyzing phospholipase D (PLD) isoforms are activated by ADP-ribosylation factors (ARFs). PLD produces phosphatidic acid from phosphatidylcholine, which may be essential for the formation of certain types of transport vesicles or may be constitutive vesicular transport to signal transduction pathways. PC-hydrolysing PLD is a homologue of cardiolipin synthase, phosphatidylserine synthase, bacterial PLDs, and viral proteins. Each of these appears to possess a domain duplication which is apparent by the presence of two motifs containing well-conserved histidine, lysine, aspartic acid, and/or asparagine residues which may contribute to the active site. An E. coli endonuclease (nuc) and similar proteins appear to be PLD homologues but possess only one of these motifs. The profile contained here represents only the putative active site regions, since an accurate multiple alignment of the repeat units has not be
Probab=98.40 E-value=2.4e-07 Score=67.22 Aligned_cols=26 Identities=58% Similarity=0.875 Sum_probs=24.7
Q ss_pred ceeeeeEEEEeCcEEEEecccCCcCc
Q 002219 899 VYVHSKVMIIDDSIALIGSANINDRS 924 (952)
Q Consensus 899 iyvHSKlmIVDD~~~iIGSANin~RS 924 (952)
.++|+|+||+|+++++|||+|++.||
T Consensus 3 ~~~H~K~~v~D~~~~~iGs~N~~~~~ 28 (28)
T smart00155 3 GVLHTKLMIVDDEIAYIGSANLDGRS 28 (28)
T ss_pred CcEEeEEEEEcCCEEEEeCccCCCCC
Confidence 57999999999999999999999987
No 64
>cd07279 PX_SNX20_21_like The phosphoinositide binding Phox Homology domain of Sorting Nexins 20 and 21. The PX domain is a phosphoinositide (PI) binding module present in many proteins with diverse functions. Sorting nexins (SNXs) make up the largest group among PX domain containing proteins. They are involved in regulating membrane traffic and protein sorting in the endosomal system. The PX domain of SNXs binds PIs and targets the protein to PI-enriched membranes. SNXs differ from each other in PI-binding specificity and affinity, and the presence of other protein-protein interaction domains, which help determine subcellular localization and specific function in the endocytic pathway. This subfamily consists of SNX20, SNX21, and similar proteins. SNX20 interacts with P-Selectin glycoprotein ligand-1 (PSGL-1), a surface-expressed mucin that acts as a ligand for the selectin family of adhesion proteins. It may function in the sorting and cycling of PSGL-1 into endosomes. SNX21, also cal
Probab=98.40 E-value=1.3e-06 Score=83.74 Aligned_cols=104 Identities=19% Similarity=0.249 Sum_probs=69.1
Q ss_pred EEEeeeeecCCCCCCcceeEEEEEEEec----ceEEEEEEehhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCC
Q 002219 46 ASIVSVSRPDAGDISPMLLSYTIEVQYK----QFKWKLVKKASQVFYLHFALKRRAFFEEIQEKQEQVKEWLQNLGMGDH 121 (952)
Q Consensus 46 v~I~~~er~~s~~~~~~~~~Y~Iel~~g----~~~W~v~r~~~~f~~Lh~~lk~~~~~~~~~~~~~~~~~~~~~~~~~~~ 121 (952)
..|+++...+.+. ..+++|.|++... .-.|.|.|||+||..||.+|+. ..|-.
T Consensus 3 ~~i~~~~~~~~~~--~~yv~Y~I~v~~~~~~~~~~~~v~RRYsdF~~L~~~L~~-------------------~~p~~-- 59 (112)
T cd07279 3 FEIVSARTVKEGE--KKYVVYQLAVVQTGDPDTQPAFIERRYSDFLKLYKALRK-------------------QHPQL-- 59 (112)
T ss_pred EEeccCeEEcCCC--eeEEEEEEEEEECCCCCCceEEEecchHhHHHHHHHHHH-------------------HCCCc--
Confidence 4566666544433 2589999999864 3579999999999999998873 11100
Q ss_pred ccccccCccccccccccccccccCCCCCCCCCCCCCCcccc-CCCcchHHHHHHHHHHHHHHhccccccchhhhheeee
Q 002219 122 MAVVQEDDEGDEIAVNHDESSKKRDVPANAALPVIRPALGR-QHSMSDRAKVAMQQYLNHFLGNMDIVNSREVCKFLEA 199 (952)
Q Consensus 122 ~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~lp~~~~~~~~-~~~~~~r~~~~LE~YL~~lL~~~~~~n~~~l~~Flev 199 (952)
-..| .+|.- ..+++ ....-..|+..||+||+.++.++.++++..+.+||+.
T Consensus 60 -----------------------~~~~---~lP~K-~~~~~~~~~~ie~Rr~~Le~fL~~l~~~p~l~~s~~~~~FL~~ 111 (112)
T cd07279 60 -----------------------MAKV---SFPRK-VLMGNFSSELIAERSRAFEQFLGHILSIPNLRDSKAFLDFLQG 111 (112)
T ss_pred -----------------------CCCC---CCCCC-eecccCCHHHHHHHHHHHHHHHHHHhCCHhhhcChHHHHHhCC
Confidence 0001 13321 11221 1233334467999999999999999999999999974
No 65
>cd07289 PX_PI3K_C2_alpha The phosphoinositide binding Phox Homology Domain of the Alpha Isoform of Class II Phosphoinositide 3-Kinases. The PX domain is a phosphoinositide (PI) binding module present in many proteins with diverse functions. The Phosphoinositide 3-Kinase (PI3K) family of enzymes catalyzes the phosphorylation of the 3-hydroxyl group of the inositol ring of phosphatidylinositol. PI3Ks play an important role in a variety of fundamental cellular processes, including cell motility, the Ras pathway, vesicle trafficking and secretion, immune cell activation and apoptosis. PI3Ks are divided into three main classes (I, II, and III) based on their substrate specificity, regulation, and domain structure. Class II PI3Ks preferentially use PI as a substrate to produce PI3P, but can also phosphorylate PI4P to produce PI(3,4)P2. They function as monomers and do not associate with any regulatory subunits. Class II enzymes contain an N-terminal Ras binding domain, a lipid binding C2 dom
Probab=98.39 E-value=1.9e-06 Score=82.10 Aligned_cols=100 Identities=17% Similarity=0.345 Sum_probs=70.8
Q ss_pred eEEEeeee-ecCCCCCCcceeEEEEEEEecce---EEEEEEehhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCC
Q 002219 45 KASIVSVS-RPDAGDISPMLLSYTIEVQYKQF---KWKLVKKASQVFYLHFALKRRAFFEEIQEKQEQVKEWLQNLGMGD 120 (952)
Q Consensus 45 ~v~I~~~e-r~~s~~~~~~~~~Y~Iel~~g~~---~W~v~r~~~~f~~Lh~~lk~~~~~~~~~~~~~~~~~~~~~~~~~~ 120 (952)
.|+|++++ |... + .+.+|.|+++...- .| |+|+|++|..||.+|+. .+|+
T Consensus 1 ~~~V~~f~Kr~~p-~---k~yvY~i~V~~~~~~~~~~-I~Rry~eF~~Lh~kL~~-------------------~Fp~-- 54 (109)
T cd07289 1 EVSVFTYHKRYNP-D---KHYIYVVRILREGQIEPSF-VFRTFDEFQELHNKLSI-------------------LFPL-- 54 (109)
T ss_pred CcEEeeEEEEEcC-C---CeEEEEEEEEECCCceeEE-EEeeHHHHHHHHHHHHH-------------------HCCc--
Confidence 37899998 5432 2 14699999999643 77 99999999999999984 3332
Q ss_pred CccccccCccccccccccccccccCCCCCCCCCCCCCCccccC--CCcchHHHHHHHHHHHHHHhccc-cccchhhhhee
Q 002219 121 HMAVVQEDDEGDEIAVNHDESSKKRDVPANAALPVIRPALGRQ--HSMSDRAKVAMQQYLNHFLGNMD-IVNSREVCKFL 197 (952)
Q Consensus 121 ~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~lp~~~~~~~~~--~~~~~r~~~~LE~YL~~lL~~~~-~~n~~~l~~Fl 197 (952)
..+|+ ||.. .-+++. ..+..+|+..|+.||+.||..+. +.++..++.||
T Consensus 55 ------------------------~~lP~---lP~k-~~~grs~~~~vae~R~~~L~~Yl~~Ll~~p~~Is~~d~v~~FF 106 (109)
T cd07289 55 ------------------------WKLPG---FPNK-MVLGRTHIKDVAAKRKVELNSYIQSLMNSSTEVAECDLVYTFF 106 (109)
T ss_pred ------------------------ccCCC---CCCC-eeeCCCcchHHHHHHHHHHHHHHHHHHcCChhhhcChHHHHhc
Confidence 11333 4421 223343 25666777899999999997655 57999999998
Q ss_pred e
Q 002219 198 E 198 (952)
Q Consensus 198 e 198 (952)
+
T Consensus 107 ~ 107 (109)
T cd07289 107 H 107 (109)
T ss_pred c
Confidence 6
No 66
>cd07277 PX_RUN The phosphoinositide binding Phox Homology domain of uncharacterized proteins containing PX and RUN domains. The PX domain is a phosphoinositide (PI) binding module involved in targeting proteins to PI-enriched membranes. Members in this subfamily are uncharacterized proteins containing an N-terminal RUN domain and a C-terminal PX domain. PX domain harboring proteins have been implicated in highly diverse functions such as cell signaling, vesicular trafficking, protein sorting, lipid modification, cell polarity and division, activation of T and B cells, and cell survival. In addition to protein-lipid interaction, the PX domain may also be involved in protein-protein interaction. The RUN domain is found in GTPases in the Rap and Rab families and may play a role in Ras-like signaling pathways.
Probab=98.39 E-value=1.6e-06 Score=83.94 Aligned_cols=49 Identities=24% Similarity=0.380 Sum_probs=38.9
Q ss_pred eEEEeeeeecCCCCCCcceeEEEEEEEecceEEEEEEehhhHHHHHHHHHH
Q 002219 45 KASIVSVSRPDAGDISPMLLSYTIEVQYKQFKWKLVKKASQVFYLHFALKR 95 (952)
Q Consensus 45 ~v~I~~~er~~s~~~~~~~~~Y~Iel~~g~~~W~v~r~~~~f~~Lh~~lk~ 95 (952)
+|.|+++.....+ ...+++|.|+++.+.-.|+|.|||+||..||.+|+.
T Consensus 2 ~v~IPs~~~~g~~--~~~y~vY~I~v~~~~~~w~V~RRYseF~~L~~~L~~ 50 (118)
T cd07277 2 NVWIPSVFLRGKG--SDAHHVYQVYIRIRDDEWNVYRRYSEFYELHKKLKK 50 (118)
T ss_pred EEEcCcEEEecCC--CCCEEEEEEEEEECCCEEEEEecHHHHHHHHHHHHH
Confidence 4667776632222 235899999999999999999999999999998884
No 67
>cd07300 PX_SNX20 The phosphoinositide binding Phox Homology domain of Sorting Nexin 20. The PX domain is a phosphoinositide (PI) binding module present in many proteins with diverse functions. Sorting nexins (SNXs) make up the largest group among PX domain containing proteins. They are involved in regulating membrane traffic and protein sorting in the endosomal system. The PX domain of SNXs binds PIs and targets the protein to PI-enriched membranes. SNXs differ from each other in PI-binding specificity and affinity, and the presence of other protein-protein interaction domains, which help determine subcellular localization and specific function in the endocytic pathway. Some SNXs are localized in early endosome structures such as clathrin-coated pits, while others are located in late structures of the endocytic pathway. SNX20 interacts with P-Selectin glycoprotein ligand-1 (PSGL-1), a surface-expressed mucin that acts as a ligand for the selectin family of adhesion proteins. The PX dom
Probab=98.38 E-value=1.7e-06 Score=83.26 Aligned_cols=91 Identities=22% Similarity=0.295 Sum_probs=61.4
Q ss_pred ceeEEEEEE-Eecce---EEEEEEehhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCccccccCccccccccc
Q 002219 62 MLLSYTIEV-QYKQF---KWKLVKKASQVFYLHFALKRRAFFEEIQEKQEQVKEWLQNLGMGDHMAVVQEDDEGDEIAVN 137 (952)
Q Consensus 62 ~~~~Y~Iel-~~g~~---~W~v~r~~~~f~~Lh~~lk~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 137 (952)
.+++|+|.+ +.|.| .|+|.|||+||..||..|+.. +. ..+..
T Consensus 17 ~yv~Y~i~~~~~g~~~~~~~~v~RRYSdF~~L~~~L~~~------------~~---~~~~~------------------- 62 (114)
T cd07300 17 KHVVYQIIVIQTGSFDCNKVVIERRYSDFLKLHQELLSD------------FS---EELED------------------- 62 (114)
T ss_pred ceEEEEEEEEEecCccCceEEEEeccHhHHHHHHHHHHH------------cc---ccCCC-------------------
Confidence 378999976 66765 999999999999999987630 00 00100
Q ss_pred cccccccCCCCCCCCCCCCCCcccc-CCCcchHHHHHHHHHHHHHHhccccccchhhhheeeec
Q 002219 138 HDESSKKRDVPANAALPVIRPALGR-QHSMSDRAKVAMQQYLNHFLGNMDIVNSREVCKFLEAS 200 (952)
Q Consensus 138 ~~~~~~~~~~p~~~~lp~~~~~~~~-~~~~~~r~~~~LE~YL~~lL~~~~~~n~~~l~~FlevS 200 (952)
..+|.-+ .+++ .+..-+.||.+||.||+.++..+.++++..+.+||+..
T Consensus 63 -------------~~lP~K~-~~~~~~~~~ie~Rr~~Le~yL~~l~~~p~l~~s~~~~~FL~~~ 112 (114)
T cd07300 63 -------------VVFPKKK-LTGNFSEEIIAERRVALRDYLTLLYSLRFVRRSQAFQDFLTHP 112 (114)
T ss_pred -------------CCCCCCc-ccCCCCHHHHHHHHHHHHHHHHHHhcCHhhhcChHHHHHhCCc
Confidence 0122111 1111 12223344579999999999999999999999999864
No 68
>cd06881 PX_SNX15_like The phosphoinositide binding Phox Homology domain of Sorting Nexin 15-like proteins. The PX domain is a phosphoinositide (PI) binding module present in many proteins with diverse functions such as cell signaling, vesicular trafficking, protein sorting, and lipid modification, among others. Members of this subfamily have similarity to sorting nexin 15 (SNX15), which contains an N-terminal PX domain and a C-terminal Microtubule Interacting and Trafficking (MIT) domain. SNXs make up the largest group among PX domain containing proteins. They are involved in regulating membrane traffic and protein sorting in the endosomal system. The PX domain of SNXs binds PIs and targets the protein to PI-enriched membranes. SNX15 plays a role in protein trafficking processes in the endocytic pathway and the trans-Golgi network. The PX domain of SNX15 interacts with the PDGF receptor and is responsible for the membrane association of the protein. Other members of this subfamily cont
Probab=98.37 E-value=1.3e-06 Score=84.34 Aligned_cols=103 Identities=20% Similarity=0.252 Sum_probs=67.7
Q ss_pred eEEEeeeeecCCCCCCcceeEEEEEEEecc-------eEEEEEEehhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcC
Q 002219 45 KASIVSVSRPDAGDISPMLLSYTIEVQYKQ-------FKWKLVKKASQVFYLHFALKRRAFFEEIQEKQEQVKEWLQNLG 117 (952)
Q Consensus 45 ~v~I~~~er~~s~~~~~~~~~Y~Iel~~g~-------~~W~v~r~~~~f~~Lh~~lk~~~~~~~~~~~~~~~~~~~~~~~ 117 (952)
+++|++.++..+ .+++|.|++..+. -.|+|.|||+||..||.+|+.. ++... ++
T Consensus 4 ~~~V~d~~~~~~-----~~t~Y~I~~~~~~~~~~~~~~~~~V~rRYsdF~~L~~~L~~~------------~~~~~--~~ 64 (117)
T cd06881 4 SFTVTDTRRHKK-----GYTEYKITSKVFSRSVPEDVSEVVVWKRYSDFKKLHRELSRL------------HKQLY--LS 64 (117)
T ss_pred EEEecCcceecC-----ceEEEEEEEEecCCCCccccceEEEECcHHHHHHHHHHHHHH------------hhhcc--cc
Confidence 456666665432 4899999998531 2899999999999999988731 11100 00
Q ss_pred CCCCccccccCccccccccccccccccCCCCCCCCCCCCCCcccc--CCCcchHHHHHHHHHHHHHHhccccccchhhhh
Q 002219 118 MGDHMAVVQEDDEGDEIAVNHDESSKKRDVPANAALPVIRPALGR--QHSMSDRAKVAMQQYLNHFLGNMDIVNSREVCK 195 (952)
Q Consensus 118 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~lp~~~~~~~~--~~~~~~r~~~~LE~YL~~lL~~~~~~n~~~l~~ 195 (952)
..+|. ||.- ..+++ .+.+..| +.+||+||+.++..+.++++..+.+
T Consensus 65 ---------------------------~~~P~---lP~K-~~~g~~~~~~IeeR-r~~Le~fL~~i~~~p~l~~s~~~~~ 112 (117)
T cd06881 65 ---------------------------GSFPP---FPKG-KYFGRFDAAVIEER-RQAILELLDFVGNHPALYQSSAFQQ 112 (117)
T ss_pred ---------------------------CcCCC---CCCC-cccCCCCHHHHHHH-HHHHHHHHHHHhCCHhhhcChHHHH
Confidence 00111 2211 11221 1234444 5799999999999999999999999
Q ss_pred eee
Q 002219 196 FLE 198 (952)
Q Consensus 196 Fle 198 (952)
|||
T Consensus 113 Fl~ 115 (117)
T cd06881 113 FFE 115 (117)
T ss_pred Hhc
Confidence 997
No 69
>cd06867 PX_SNX41_42 The phosphoinositide binding Phox Homology domain of fungal Sorting Nexins 41 and 42. The PX domain is a phosphoinositide (PI) binding module present in many proteins with diverse functions. Sorting nexins (SNXs) make up the largest group among PX domain containing proteins. They are involved in regulating membrane traffic and protein sorting in the endosomal system. The PX domain of SNXs binds PIs and targets the protein to PI-enriched membranes. SNXs differ from each other in PI-binding specificity and affinity, and the presence of other protein-protein interaction domains, which help determine subcellular localization and specific function in the endocytic pathway. Some SNXs are localized in early endosome structures such as clathrin-coated pits, while others are located in late structures of the endocytic pathway. SNX41 and SNX42 (also called Atg20p) form dimers with SNX4, and are required in protein recycling from the sorting endosome (post-Golgi endosome) back
Probab=98.36 E-value=1.6e-06 Score=82.97 Aligned_cols=109 Identities=20% Similarity=0.223 Sum_probs=65.7
Q ss_pred EEEeeeeecCCCCCCcceeEEEEEEEecceEEEEEEehhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCcccc
Q 002219 46 ASIVSVSRPDAGDISPMLLSYTIEVQYKQFKWKLVKKASQVFYLHFALKRRAFFEEIQEKQEQVKEWLQNLGMGDHMAVV 125 (952)
Q Consensus 46 v~I~~~er~~s~~~~~~~~~Y~Iel~~g~~~W~v~r~~~~f~~Lh~~lk~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 125 (952)
++|++......+. ...+++|+|+++- |+|.|||+||..||.+|+.. + ...-+++..++.
T Consensus 2 ~~i~~~~~~~~~~-~~~y~~Y~I~~~~----~~V~RRYsdF~~L~~~L~~~------------~----p~~~iPplP~K~ 60 (112)
T cd06867 2 IQIVDAGKSSEGG-SGSYIVYVIRLGG----SEVKRRYSEFESLRKNLTRL------------Y----PTLIIPPIPEKH 60 (112)
T ss_pred cEEccCccccCCC-ccCEEEEEEEeee----EEEEeccHHHHHHHHHHHHH------------C----cCCCcCCCCCcc
Confidence 5677776543321 1248999999864 99999999999999988741 0 111111110000
Q ss_pred ccCccccccccccccccccCCCCCCCCCCCCCCccc-cCCCcchHHHHHHHHHHHHHHhccccccchhhhheeee
Q 002219 126 QEDDEGDEIAVNHDESSKKRDVPANAALPVIRPALG-RQHSMSDRAKVAMQQYLNHFLGNMDIVNSREVCKFLEA 199 (952)
Q Consensus 126 ~~~~~~~~~~~~~~~~~~~~~~p~~~~lp~~~~~~~-~~~~~~~r~~~~LE~YL~~lL~~~~~~n~~~l~~Flev 199 (952)
- +-+ .... ...+ ....+-+.|+..||.||+.++.++.++++..+.+||+.
T Consensus 61 ~--------------------~~~---~~~~-~~~~~~~~~~ie~Rr~~Le~fL~~l~~~p~l~~s~~~~~FL~~ 111 (112)
T cd06867 61 S--------------------LKD---YAKK-PSKAKNDAKIIERRKRMLQRFLNRCLQHPILRNDIVFQKFLDP 111 (112)
T ss_pred h--------------------hhh---hccc-cccccCcHHHHHHHHHHHHHHHHHHhcChhhccCcHHHHhcCC
Confidence 0 000 0000 0000 11222334456999999999999999999999999974
No 70
>cd06865 PX_SNX_like The phosphoinositide binding Phox Homology domain of SNX-like proteins. The PX domain is a phosphoinositide (PI) binding module present in many proteins with diverse functions. Sorting nexins (SNXs) make up the largest group among PX domain containing proteins. They are involved in regulating membrane traffic and protein sorting in the endosomal system. The PX domain of SNXs binds PIs and targets the protein to PI-enriched membranes. SNXs differ from each other in PI-binding specificity and affinity, and the presence of other protein-protein interaction domains, which help determine subcellular localization and specific function in the endocytic pathway. Some SNXs are localized in early endosome structures such as clathrin-coated pits, while others are located in late structures of the endocytic pathway. This subfamily is composed of uncharacterized proteins, predominantly from plants, with similarity to sorting nexins. A few members show a similar domain architectu
Probab=98.32 E-value=2.6e-06 Score=82.67 Aligned_cols=91 Identities=20% Similarity=0.263 Sum_probs=63.2
Q ss_pred cceeEEEEEEEec-----ceEEEEEEehhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCccccccCccccccc
Q 002219 61 PMLLSYTIEVQYK-----QFKWKLVKKASQVFYLHFALKRRAFFEEIQEKQEQVKEWLQNLGMGDHMAVVQEDDEGDEIA 135 (952)
Q Consensus 61 ~~~~~Y~Iel~~g-----~~~W~v~r~~~~f~~Lh~~lk~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 135 (952)
..+++|+|+++.+ .-.|+|.|||+||..||.+|+.. ....-+
T Consensus 21 ~~ytvY~I~~~~~~~~~~~~~~~V~RRYsdF~~L~~~L~~~----------------~p~~~i----------------- 67 (120)
T cd06865 21 PPYISYKVTTRTNIPSYTHGEFTVRRRFRDVVALADRLAEA----------------YRGAFV----------------- 67 (120)
T ss_pred CCEEEEEEEEecCCCCCCCCceEEEeehHHHHHHHHHHHHH----------------CCCCee-----------------
Confidence 3589999999877 36899999999999999988730 111111
Q ss_pred cccccccccCCCCCCCCCCCCCC--cc-ccCCCcchHHHHHHHHHHHHHHhccccccchhhhheeee
Q 002219 136 VNHDESSKKRDVPANAALPVIRP--AL-GRQHSMSDRAKVAMQQYLNHFLGNMDIVNSREVCKFLEA 199 (952)
Q Consensus 136 ~~~~~~~~~~~~p~~~~lp~~~~--~~-~~~~~~~~r~~~~LE~YL~~lL~~~~~~n~~~l~~Flev 199 (952)
|. ||.-.. .. ......-+.|+++||.||+.++.++.++++..+..||+.
T Consensus 68 ------------Pp---lP~K~~~~~~~~~~~~fie~Rr~~Le~fL~~i~~~p~l~~s~~~~~FL~~ 119 (120)
T cd06865 68 ------------PP---RPDKSVVESQVMQSAEFIEQRRVALEKYLNRLAAHPVIGLSDELRVFLTL 119 (120)
T ss_pred ------------CC---CcCCccccccccCCHHHHHHHHHHHHHHHHHHHcCceeecCcHHHHhccC
Confidence 11 221000 00 012233445567999999999999999999999999974
No 71
>cd06862 PX_SNX9_18_like The phosphoinositide binding Phox Homology domain of Sorting Nexins 9 and 18. The PX domain is a phosphoinositide (PI) binding module present in many proteins with diverse functions. Sorting nexins (SNXs) make up the largest group among PX domain containing proteins. They are involved in regulating membrane traffic and protein sorting in the endosomal system. The PX domain of SNXs binds PIs and targets the protein to PI-enriched membranes. SNXs differ from each other in PI-binding specificity and affinity, and the presence of other protein-protein interaction domains, which help determine subcellular localization and specific function in the endocytic pathway. This subfamily consists of SNX9, SNX18, and similar proteins. They contain an N-terminal Src Homology 3 (SH3) domain, a PX domain, and a C-terminal Bin/Amphiphysin/Rvs (BAR) domain. SNX9 is localized to plasma membrane endocytic sites and acts primarily in clathrin-mediated endocytosis, while SNX18 is loca
Probab=98.31 E-value=3.3e-06 Score=82.65 Aligned_cols=106 Identities=12% Similarity=0.213 Sum_probs=68.7
Q ss_pred eEEEeeeeecCCCCCCcceeEEEEEEEecceEEEEEEehhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCccc
Q 002219 45 KASIVSVSRPDAGDISPMLLSYTIEVQYKQFKWKLVKKASQVFYLHFALKRRAFFEEIQEKQEQVKEWLQNLGMGDHMAV 124 (952)
Q Consensus 45 ~v~I~~~er~~s~~~~~~~~~Y~Iel~~g~~~W~v~r~~~~f~~Lh~~lk~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 124 (952)
+|.|.+=++....+-...+++|.|.+.. -.|.|.|+|+||..||.+|.. ..|-
T Consensus 2 ~~~v~~p~~~~~~~g~~~y~~Y~I~~~~--~~~~V~RRYsdF~~L~~~L~~-------------------~~p~------ 54 (125)
T cd06862 2 HCTVTNPKKESKFKGLKSFIAYQITPTH--TNVTVSRRYKHFDWLYERLVE-------------------KYSC------ 54 (125)
T ss_pred EEEEcCccccCCCCCCcCEEEEEEEEec--CcEEEEEecHHHHHHHHHHHH-------------------HCCC------
Confidence 3455554443211111248999999875 579999999999999998773 1110
Q ss_pred cccCccccccccccccccccCCCCCCCCCCCCCCcccc-CCCcchHHHHHHHHHHHHHHhccccccchhhhheeeecc
Q 002219 125 VQEDDEGDEIAVNHDESSKKRDVPANAALPVIRPALGR-QHSMSDRAKVAMQQYLNHFLGNMDIVNSREVCKFLEASK 201 (952)
Q Consensus 125 ~~~~~~~~~~~~~~~~~~~~~~~p~~~~lp~~~~~~~~-~~~~~~r~~~~LE~YL~~lL~~~~~~n~~~l~~FlevS~ 201 (952)
..+|. ||.- ..+++ ...+-..|+..||.||+.++.++.++++..+.+||+.+.
T Consensus 55 --------------------~~iPp---lP~K-~~~~~~~~~fie~Rr~~Le~fL~~I~~~p~l~~s~~~~~FL~~~~ 108 (125)
T cd06862 55 --------------------IAIPP---LPEK-QVTGRFEEDFIEKRRERLELWMNRLARHPVLSQSEVFRHFLTCTD 108 (125)
T ss_pred --------------------CCCCC---CCCC-ccccCCCHHHHHHHHHHHHHHHHHHhcCHhhhcChHHHHHcCCcc
Confidence 01111 3321 11111 123333456799999999999999999999999999884
No 72
>cd06874 PX_KIF16B_SNX23 The phosphoinositide binding Phox Homology domain of KIF16B kinesin or Sorting Nexin 23. The PX domain is a phosphoinositide (PI) binding module present in many proteins with diverse functions such as cell signaling, vesicular trafficking, protein sorting, and lipid modification, among others. KIF16B, also called sorting nexin 23 (SNX23), is a family-3 kinesin which harbors an N-terminal kinesin motor domain containing ATP and microtubule binding sites, a ForkHead Associated (FHA) domain, and a C-terminal PX domain. The PX domain of KIF16B binds to phosphatidylinositol-3-phosphate (PI3P) in early endosomes and plays a role in the transport of early endosomes to the plus end of microtubules. By regulating early endosome plus end motility, KIF16B modulates the balance between recycling and degradation of receptors. SNXs make up the largest group among PX domain containing proteins. They are involved in regulating membrane traffic and protein sorting in the endoso
Probab=98.31 E-value=4e-06 Score=82.22 Aligned_cols=49 Identities=16% Similarity=0.274 Sum_probs=39.2
Q ss_pred eEEEeeeeecCCCCCCcceeEEEEEEEecceEEEEEEehhhHHHHHHHHHH
Q 002219 45 KASIVSVSRPDAGDISPMLLSYTIEVQYKQFKWKLVKKASQVFYLHFALKR 95 (952)
Q Consensus 45 ~v~I~~~er~~s~~~~~~~~~Y~Iel~~g~~~W~v~r~~~~f~~Lh~~lk~ 95 (952)
+++|+++.....+. ..+++|.|+++.+..+|+|.|||+||..||.+|+.
T Consensus 2 ~i~Ip~~~~~~~~~--~~y~vY~I~v~~~~~~w~V~RRYseF~~Lh~~L~~ 50 (127)
T cd06874 2 KITIPRYVLRGQGK--DEHFEFEVKITVLDETWTVFRRYSRFRELHKTMKL 50 (127)
T ss_pred EEEECCeEEecCCC--CcEEEEEEEEEECCcEEEEEeeHHHHHHHHHHHHH
Confidence 57778876322222 24889999999999999999999999999998874
No 73
>cd01236 PH_outspread Outspread Pleckstrin homology (PH) domain. Outspread Pleckstrin homology (PH) domain. Outspread contains two PH domains and a C-terminal coiled-coil region. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains. PH domains are found in cellular signaling proteins such as serine/threonine kinase, tyrosine kinsases, regulators of G-proteins, endocytotic GTPAses, adaptors, a well as cytoskeletal associated molecules and in lipid associated enzymes.
Probab=98.30 E-value=4.8e-06 Score=78.98 Aligned_cols=79 Identities=16% Similarity=0.214 Sum_probs=56.0
Q ss_pred CCcceEEEEEeCCeEEEE-e-CCCCCCccEEEEEeCCCCCCCCCCCcccccccccccCCcceeEEEEeCceEEEEEecch
Q 002219 245 DNWQKVWAVLKPGFLALL-A-DPFDTKPMDIIVFDVLPASDGNGEGRVSLATEVKERNPLRHAFKVTCGVRSIRLRTRTG 322 (952)
Q Consensus 245 ~rw~kRWfvVKdSfL~yv-~-d~~~~~~~~v~l~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~r~l~l~~~s~ 322 (952)
.+|++|||||++..++|+ . ++.+..+..+|-+..- ..|.-+. +.++..++|.|.+.+|...|.|.++
T Consensus 22 K~WkrRWFvL~~~~~L~y~~d~~~~~~p~G~IdL~~~--------~~V~~~~---~~~~~~~~f~I~tp~R~f~l~Aete 90 (104)
T cd01236 22 KRWQRRWFILYDHGLLTYALDEMPTTLPQGTIDMNQC--------TDVVDAE---ARTGQKFSICILTPDKEHFIKAETK 90 (104)
T ss_pred ccccceEEEEeCCCEEEEeeCCCCCcccceEEEccce--------EEEeecc---cccCCccEEEEECCCceEEEEeCCH
Confidence 689999999997555554 3 3334567777655431 1122111 1233468999999999999999999
Q ss_pred hhHHHHHHHHHh
Q 002219 323 AKVRDWVAAIND 334 (952)
Q Consensus 323 ~~~~~w~~~i~~ 334 (952)
.+..+|+.+|..
T Consensus 91 ~E~~~Wi~~l~~ 102 (104)
T cd01236 91 EEISWWLNMLMV 102 (104)
T ss_pred HHHHHHHHHHHh
Confidence 999999999875
No 74
>PF00169 PH: PH domain; InterPro: IPR001849 The pleckstrin homology (PH) domain is a domain of about 100 residues that occurs in a wide range of proteins involved in intracellular signalling or as constituents of the cytoskeleton [, , , , , , ]. The pleckstrin homology domain commonly found in eukaryotic signalling proteins. The domain family possesses multiple functions including the abilities to bind inositol phosphates, and various proteins. PH domains have been found to possess inserted domains (such as in PLC gamma, syntrophins) and to be inserted within other domains. Mutations in Brutons tyrosine kinase (Btk) within its PH domain cause X-linked agammaglobulinaemia (XLA) in patients. Point mutations cluster into the positively charged end of the molecule around the predicted binding site for phosphatidylinositol lipids. The 3D structure of several PH domains has been determined []. All known cases have a common structure consisting of two perpendicular anti-parallel beta sheets, followed by a C-terminal amphipathic helix. The loops connecting the beta-strands differ greatly in length, making the PH domain relatively difficult to detect. There are no totally invariant residues within the PH domain. Proteins reported to contain one more PH domains belong to the following families: Pleckstrin, the protein where this domain was first detected, is the major substrate of protein kinase C in platelets. Pleckstrin is one of the rare proteins to contains two PH domains. Ser/Thr protein kinases such as the Akt/Rac family, the beta-adrenergic receptor kinases, the mu isoform of PKC and the trypanosomal NrkA family. Tyrosine protein kinases belonging to the Btk/Itk/Tec subfamily. Insulin Receptor Substrate 1 (IRS-1). Regulators of small G-proteins like guanine nucleotide releasing factor GNRP (Ras-GRF) (which contains 2 PH domains), guanine nucleotide exchange proteins like vav, dbl, SoS and Saccharomyces cerevisiae CDC24, GTPase activating proteins like rasGAP and BEM2/IPL2, and the human break point cluster protein bcr. Cytoskeletal proteins such as dynamin (see IPR001401 from INTERPRO), Caenorhabditis elegans kinesin-like protein unc-104 (see IPR001752 from INTERPRO), spectrin beta-chain, syntrophin (2 PH domains) and S. cerevisiae nuclear migration protein NUM1. Mammalian phosphatidylinositol-specific phospholipase C (PI-PLC) (see IPR000909 from INTERPRO) isoforms gamma and delta. Isoform gamma contains two PH domains, the second one is split into two parts separated by about 400 residues. Oxysterol binding proteins OSBP, S. cerevisiae OSH1 and YHR073w. Mouse protein citron, a putative rho/rac effector that binds to the GTP-bound forms of rho and rac. Several S. cerevisiae proteins involved in cell cycle regulation and bud formation like BEM2, BEM3, BUD4 and the BEM1-binding proteins BOI2 (BEB1) and BOI1 (BOB1). C. elegans protein MIG-10. C. elegans hypothetical proteins C04D8.1, K06H7.4 and ZK632.12. S. cerevisiae hypothetical proteins YBR129c and YHR155w. ; GO: 0005515 protein binding; PDB: 1DYN_B 2DYN_B 3SNH_A 3ZYS_C 1X05_A 2I5F_A 1ZM0_B 1XX0_A 2I5C_C 3A8P_D ....
Probab=98.29 E-value=6.3e-06 Score=74.63 Aligned_cols=94 Identities=22% Similarity=0.391 Sum_probs=70.3
Q ss_pred ceeEEEeeecCCccCCCCCCcccccCCCccccCCcceEEEEEeCCeEEEEeCCC---CCCccEEEEEeCCCCCCCCCCCc
Q 002219 213 KEDYVMAKHLPKISRNDDSRKCCCCPLFTCCNDNWQKVWAVLKPGFLALLADPF---DTKPMDIIVFDVLPASDGNGEGR 289 (952)
Q Consensus 213 KEG~l~kr~~~~~~G~~~~~~~~~~~~~~~~~~rw~kRWfvVKdSfL~yv~d~~---~~~~~~v~l~D~~~~~~~~~~~~ 289 (952)
+||||.+++. + ...|++|||+|++++|.|++++. ...+..++-++.. .
T Consensus 3 ~~G~L~~~~~----~----------------~~~wk~r~~vL~~~~L~~~~~~~~~~~~~~~~~i~l~~~---------~ 53 (104)
T PF00169_consen 3 KEGWLLKKSS----S----------------RKKWKKRYFVLRDSYLLYYKSSKDKSDSKPKGSIPLDDC---------T 53 (104)
T ss_dssp EEEEEEEEES----S----------------SSSEEEEEEEEETTEEEEESSTTTTTESSESEEEEGTTE---------E
T ss_pred EEEEEEEECC----C----------------CCCeEEEEEEEECCEEEEEecCccccceeeeEEEEecCc---------e
Confidence 7999999851 0 05799999999999999999877 4567777766531 1
Q ss_pred ccccccc--cccCCcceeEEEEeCce-EEEEEecchhhHHHHHHHHHhc
Q 002219 290 VSLATEV--KERNPLRHAFKVTCGVR-SIRLRTRTGAKVRDWVAAINDA 335 (952)
Q Consensus 290 ~~~~~~~--~~~~~~~~~~~i~~~~r-~l~l~~~s~~~~~~w~~~i~~~ 335 (952)
+...... ....+..+.|.|.+..+ ++.|.|.|......|..+|+.+
T Consensus 54 v~~~~~~~~~~~~~~~~~f~i~~~~~~~~~~~~~s~~~~~~W~~~i~~~ 102 (104)
T PF00169_consen 54 VRPDPSSDFLSNKKRKNCFEITTPNGKSYLFSAESEEERKRWIQAIQKA 102 (104)
T ss_dssp EEEETSSTSTSTSSSSSEEEEEETTSEEEEEEESSHHHHHHHHHHHHHH
T ss_pred EEEcCccccccccCCCcEEEEEeCCCcEEEEEcCCHHHHHHHHHHHHHH
Confidence 2111110 01235679999999987 9999999999999999999875
No 75
>cd01265 PH_PARIS-1 PARIS-1 pleckstrin homology (PH) domain. PARIS-1 pleckstrin homology (PH) domain. PARIS-1 contains a PH domain and a TBC-type GTPase catalytic domain. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains.
Probab=98.28 E-value=5.1e-06 Score=77.27 Aligned_cols=77 Identities=16% Similarity=0.327 Sum_probs=60.6
Q ss_pred CCcceEEEEEeC--CeEEEEeCCCCCCccEEEEEeCCCCCCCCCCCcccccccccccCCcceeEEEEeCceEEEEEecch
Q 002219 245 DNWQKVWAVLKP--GFLALLADPFDTKPMDIIVFDVLPASDGNGEGRVSLATEVKERNPLRHAFKVTCGVRSIRLRTRTG 322 (952)
Q Consensus 245 ~rw~kRWfvVKd--SfL~yv~d~~~~~~~~v~l~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~r~l~l~~~s~ 322 (952)
..|++||||+++ .+|.|++++.+..++.+|-+... .+. . .. ...++.|.|.+++|...|.|.|.
T Consensus 15 K~WkkRWFvL~~~~~~L~Yyk~~~d~~p~G~I~L~~~---------~~~--~--~~-~~~~~~F~i~t~~r~y~l~A~s~ 80 (95)
T cd01265 15 RGRRSRWFALDDRTCYLYYYKDSQDAKPLGRVDLSGA---------AFT--Y--DP-REEKGRFEIHSNNEVIALKASSD 80 (95)
T ss_pred cCceeEEEEEcCCCcEEEEECCCCcccccceEECCcc---------EEE--c--CC-CCCCCEEEEEcCCcEEEEECCCH
Confidence 579999999984 58999999988888888866531 111 0 01 11256899999999999999999
Q ss_pred hhHHHHHHHHHhc
Q 002219 323 AKVRDWVAAINDA 335 (952)
Q Consensus 323 ~~~~~w~~~i~~~ 335 (952)
..+.+|+.+|+.+
T Consensus 81 ~e~~~Wi~al~~~ 93 (95)
T cd01265 81 KQMNYWLQALQSK 93 (95)
T ss_pred HHHHHHHHHHHhh
Confidence 9999999999874
No 76
>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]
Probab=98.28 E-value=1.2e-06 Score=95.52 Aligned_cols=34 Identities=21% Similarity=0.324 Sum_probs=32.3
Q ss_pred ceeEEEEEEEecceEEEEEEehhhHHHHHHHHHH
Q 002219 62 MLLSYTIEVQYKQFKWKLVKKASQVFYLHFALKR 95 (952)
Q Consensus 62 ~~~~Y~Iel~~g~~~W~v~r~~~~f~~Lh~~lk~ 95 (952)
.+|+|.|.++.|...|+|+++|+||..||.+|..
T Consensus 26 ~~t~y~i~v~~g~~ew~v~~ry~df~~lheklv~ 59 (490)
T KOG1259|consen 26 GVTYYDIKVRVGKVEWLVERRYRDFANLHEKLVG 59 (490)
T ss_pred ceEEEEEEEEecceeeeehhhhhHHHHHHHHhhh
Confidence 4899999999999999999999999999999885
No 77
>cd06861 PX_Vps5p The phosphoinositide binding Phox Homology domain of yeast sorting nexin Vps5p. The PX domain is a phosphoinositide (PI) binding module present in many proteins with diverse functions. Sorting nexins (SNXs) make up the largest group among PX domain containing proteins. They are involved in regulating membrane traffic and protein sorting in the endosomal system. The PX domain of SNXs binds PIs and targets the protein to PI-enriched membranes. SNXs differ from each other in PI-binding specificity and affinity, and the presence of other protein-protein interaction domains, which help determine subcellular localization and specific function in the endocytic pathway. Vsp5p is the yeast counterpart of human SNX1 and is part of the retromer complex, which functions in the endosome-to-Golgi retrieval of vacuolar protein sorting receptor Vps10p, the Golgi-resident membrane protein A-ALP, and endopeptidase Kex2. The PX domain of Vps5p binds phosphatidylinositol-3-phosphate (PI3P
Probab=98.27 E-value=4.5e-06 Score=80.05 Aligned_cols=103 Identities=15% Similarity=0.285 Sum_probs=67.3
Q ss_pred EEEeeeeecCCCCCCcceeEEEEEEEec-----ceEEEEEEehhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCC
Q 002219 46 ASIVSVSRPDAGDISPMLLSYTIEVQYK-----QFKWKLVKKASQVFYLHFALKRRAFFEEIQEKQEQVKEWLQNLGMGD 120 (952)
Q Consensus 46 v~I~~~er~~s~~~~~~~~~Y~Iel~~g-----~~~W~v~r~~~~f~~Lh~~lk~~~~~~~~~~~~~~~~~~~~~~~~~~ 120 (952)
|+|.+.+... +....+++|+|.++-. .-.|+|.|||+||..||.+|+.. + ...
T Consensus 3 i~V~dp~~~~--~~~~~y~~Y~I~~~~~~~~~~~~~~~V~RRYsdF~~L~~~L~~~------------~----~~~---- 60 (112)
T cd06861 3 ITVGDPHKVG--DLTSAHTVYTVRTRTTSPNFEVSSFSVLRRYRDFRWLYRQLQNN------------H----PGV---- 60 (112)
T ss_pred EEEcCcceec--CCccCeEEEEEEEEeCCCCCCCCccEEEeehHHHHHHHHHHHHH------------C----CCC----
Confidence 4455544332 2223589999998854 34899999999999999988630 0 010
Q ss_pred CccccccCccccccccccccccccCCCCCCCCCCCCCCcccc-CCCcchHHHHHHHHHHHHHHhccccccchhhhheeee
Q 002219 121 HMAVVQEDDEGDEIAVNHDESSKKRDVPANAALPVIRPALGR-QHSMSDRAKVAMQQYLNHFLGNMDIVNSREVCKFLEA 199 (952)
Q Consensus 121 ~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~lp~~~~~~~~-~~~~~~r~~~~LE~YL~~lL~~~~~~n~~~l~~Flev 199 (952)
.+|. +|.- ..+++ ...+.+.|+.+||.||+.++..+.++++..+..||+.
T Consensus 61 -------------------------~iP~---lP~K-~~~~~~~~~fie~Rr~~Le~fL~~i~~~p~l~~s~~~~~FL~~ 111 (112)
T cd06861 61 -------------------------IVPP---PPEK-QSVGRFDDNFVEQRRAALEKMLRKIANHPVLQKDPDFRLFLES 111 (112)
T ss_pred -------------------------ccCC---CCCc-ccccCCCHHHHHHHHHHHHHHHHHHHCCcccccCcHHHHhcCC
Confidence 0111 3321 11221 1223334467999999999999999999999999974
No 78
>cd07301 PX_SNX21 The phosphoinositide binding Phox Homology domain of Sorting Nexin 21. The PX domain is a phosphoinositide (PI) binding module present in many proteins with diverse functions. Sorting nexins (SNXs) make up the largest group among PX domain containing proteins. They are involved in regulating membrane traffic and protein sorting in the endosomal system. The PX domain of SNXs binds PIs and targets the protein to PI-enriched membranes. SNXs differ from each other in PI-binding specificity and affinity, and the presence of other protein-protein interaction domains, which help determine subcellular localization and specific function in the endocytic pathway. Some SNXs are localized in early endosome structures such as clathrin-coated pits, while others are located in late structures of the endocytic pathway. SNX21, also called SNX-L, is distinctly and highly-expressed in fetal liver and may be involved in protein sorting and degradation during embryonic liver development.
Probab=98.26 E-value=4.2e-06 Score=80.38 Aligned_cols=90 Identities=21% Similarity=0.227 Sum_probs=60.1
Q ss_pred ceeEEEEEEE----ecceEEEEEEehhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCccccccCccccccccc
Q 002219 62 MLLSYTIEVQ----YKQFKWKLVKKASQVFYLHFALKRRAFFEEIQEKQEQVKEWLQNLGMGDHMAVVQEDDEGDEIAVN 137 (952)
Q Consensus 62 ~~~~Y~Iel~----~g~~~W~v~r~~~~f~~Lh~~lk~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 137 (952)
.+++|+|.+. ++.-.|.|.|||+||..||..|+. ..|..
T Consensus 17 ~yv~Y~I~v~~~~~~~~~~~~V~RRYSdF~~L~~~L~~-------------------~~~~~------------------ 59 (112)
T cd07301 17 KYVLYTIYVIQTGQYDPSPAYISRRYSDFERLHRRLRR-------------------LFGGE------------------ 59 (112)
T ss_pred CEEEEEEEEEecCCCCCCceEEEeehHhHHHHHHHHHH-------------------HCCCc------------------
Confidence 4899999985 344579999999999999998763 11110
Q ss_pred cccccccCCCCCCCCCCCCCCccc-cCCCcchHHHHHHHHHHHHHHhccccccchhhhheeee
Q 002219 138 HDESSKKRDVPANAALPVIRPALG-RQHSMSDRAKVAMQQYLNHFLGNMDIVNSREVCKFLEA 199 (952)
Q Consensus 138 ~~~~~~~~~~p~~~~lp~~~~~~~-~~~~~~~r~~~~LE~YL~~lL~~~~~~n~~~l~~Flev 199 (952)
+| ...+|.-+ .++ -....-+.|+..||+||+.++.++.++++..+.+||.+
T Consensus 60 ---------~~-~~~~P~K~-~~~~~~~~~ie~Rr~~Le~fL~~i~~~p~l~~s~~~~~FL~l 111 (112)
T cd07301 60 ---------MA-GVSFPRKR-LRKNFTAETIAKRSRAFEQFLCHLHSLPELRASPAFLEFFYL 111 (112)
T ss_pred ---------CC-CCCCCCCc-ccCCCCHHHHHHHHHHHHHHHHHHhcCHHHhcChHHHHHhCC
Confidence 00 00122111 011 11223334457999999999999999999999999864
No 79
>cd06879 PX_UP1_plant The phosphoinositide binding Phox Homology domain of uncharacterized plant proteins. The PX domain is a phosphoinositide (PI) binding module involved in targeting proteins to PI-enriched membranes. Members in this subfamily are uncharacterized fungal proteins containing a PX domain. PX domain harboring proteins have been implicated in highly diverse functions such as cell signaling, vesicular trafficking, protein sorting, lipid modification, cell polarity and division, activation of T and B cells, and cell survival. In addition to protein-lipid interaction, the PX domain may also be involved in protein-protein interaction.
Probab=98.25 E-value=3.1e-06 Score=83.65 Aligned_cols=89 Identities=19% Similarity=0.364 Sum_probs=63.0
Q ss_pred ceeEEEEEEEecc-----eEEEEEEehhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCccccccCcccccccc
Q 002219 62 MLLSYTIEVQYKQ-----FKWKLVKKASQVFYLHFALKRRAFFEEIQEKQEQVKEWLQNLGMGDHMAVVQEDDEGDEIAV 136 (952)
Q Consensus 62 ~~~~Y~Iel~~g~-----~~W~v~r~~~~f~~Lh~~lk~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 136 (952)
..+.|+|++..+. ..|.|.|||+||..||..|+. ..|-
T Consensus 43 ~~~~y~VqV~v~~~~~~~~~w~V~RRYSDF~~L~~~L~~-------------------~~p~------------------ 85 (138)
T cd06879 43 VDKFYRVQVGVQSPEGITTMRGVLRRFNDFLKLHTDLKK-------------------LFPK------------------ 85 (138)
T ss_pred ceEEEEEEEeecCCCCcceeeeeecCchHHHHHHHHHHH-------------------HCCC------------------
Confidence 3679999999993 599999999999999998873 1110
Q ss_pred ccccccccCCCCCCCCCCCCCCcccc-CCCcchHHHHHHHHHHHHHHhccccccchhhhheeee
Q 002219 137 NHDESSKKRDVPANAALPVIRPALGR-QHSMSDRAKVAMQQYLNHFLGNMDIVNSREVCKFLEA 199 (952)
Q Consensus 137 ~~~~~~~~~~~p~~~~lp~~~~~~~~-~~~~~~r~~~~LE~YL~~lL~~~~~~n~~~l~~Flev 199 (952)
..+|. +|.-+ .++. ....-++||..||.||++++.++.++++..+.+|||+
T Consensus 86 --------~~lPp---lPpK~-~l~~~~~~fiEeRR~gLE~fLq~Ll~~p~l~~s~~v~~FLel 137 (138)
T cd06879 86 --------KKLPA---APPKG-LLRMKNRALLEERRHSLEEWMGKLLSDIDLSRSVPVASFLEL 137 (138)
T ss_pred --------CcCCC---CCCcc-cccCCCHHHHHHHHHHHHHHHHHHHcCccccCCHHHHHHhCC
Confidence 01121 22110 1111 1233345567999999999999999999999999986
No 80
>cd06859 PX_SNX1_2_like The phosphoinositide binding Phox Homology domain of Sorting Nexins 1 and 2. The PX domain is a phosphoinositide (PI) binding module present in many proteins with diverse functions. Sorting nexins (SNXs) make up the largest group among PX domain containing proteins. They are involved in regulating membrane traffic and protein sorting in the endosomal system. The PX domain of SNXs binds PIs and targets the protein to PI-enriched membranes. SNXs differ from each other in PI-binding specificity and affinity, and the presence of other protein-protein interaction domains, which help determine subcellular localization and specific function in the endocytic pathway. This subfamily consists of SNX1, SNX2, and similar proteins. They harbor a Bin/Amphiphysin/Rvs (BAR) domain, which detects membrane curvature, C-terminal to the PX domain. Both domains have been shown to determine the specific membrane-targeting of SNX1. SNX1 and SNX2 are components of the retromer complex,
Probab=98.25 E-value=5.1e-06 Score=79.51 Aligned_cols=102 Identities=18% Similarity=0.320 Sum_probs=67.9
Q ss_pred EEEeeeeecCCCCCCcceeEEEEEEEec-----ceEEEEEEehhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCC
Q 002219 46 ASIVSVSRPDAGDISPMLLSYTIEVQYK-----QFKWKLVKKASQVFYLHFALKRRAFFEEIQEKQEQVKEWLQNLGMGD 120 (952)
Q Consensus 46 v~I~~~er~~s~~~~~~~~~Y~Iel~~g-----~~~W~v~r~~~~f~~Lh~~lk~~~~~~~~~~~~~~~~~~~~~~~~~~ 120 (952)
|.|.+.++..++. ..+++|+|++..+ .-.|.|.|||+||..||.+|+. ..| .
T Consensus 3 ~~V~~p~~~~~~~--~~y~~Y~I~v~~~~~~~~~~~~~v~RRyseF~~L~~~L~~-------------------~~~--~ 59 (114)
T cd06859 3 ISVTDPVKVGDGM--SAYVVYRVTTKTNLPDFKKSEFSVLRRYSDFLWLYERLVE-------------------KYP--G 59 (114)
T ss_pred EEEeCcceecCCc--cCEEEEEEEeecCCCCCCCCceEEEEChHHHHHHHHHHHH-------------------HCC--C
Confidence 5566666533332 3589999999864 3479999999999999998873 111 0
Q ss_pred CccccccCccccccccccccccccCCCCCCCCCCCCCCccccC-CC--cchHHHHHHHHHHHHHHhccccccchhhhhee
Q 002219 121 HMAVVQEDDEGDEIAVNHDESSKKRDVPANAALPVIRPALGRQ-HS--MSDRAKVAMQQYLNHFLGNMDIVNSREVCKFL 197 (952)
Q Consensus 121 ~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~lp~~~~~~~~~-~~--~~~r~~~~LE~YL~~lL~~~~~~n~~~l~~Fl 197 (952)
..+|. ||.- ..+++. .. .-+.|+.+||.||+.++..+.++++..+..||
T Consensus 60 ------------------------~~~P~---lP~k-~~~~~~~~~~~~ie~Rr~~L~~fL~~i~~~p~l~~s~~~~~Fl 111 (114)
T cd06859 60 ------------------------RIVPP---PPEK-QAVGRFKVKFEFIEKRRAALERFLRRIAAHPVLRKDPDFRLFL 111 (114)
T ss_pred ------------------------CEeCC---CCCC-cccCccCccHHHHHHHHHHHHHHHHHHhcChhhccCcHHHhhc
Confidence 01122 3321 112221 11 23344579999999999999999999999999
Q ss_pred e
Q 002219 198 E 198 (952)
Q Consensus 198 e 198 (952)
+
T Consensus 112 ~ 112 (114)
T cd06859 112 E 112 (114)
T ss_pred C
Confidence 6
No 81
>cd07282 PX_SNX2 The phosphoinositide binding Phox Homology domain of Sorting Nexin 2. The PX domain is a phosphoinositide (PI) binding module present in many proteins with diverse functions. Sorting nexins (SNXs) make up the largest group among PX domain containing proteins. They are involved in regulating membrane traffic and protein sorting in the endosomal system. The PX domain of SNXs binds PIs and targets the protein to PI-enriched membranes. SNXs differ from each other in PI-binding specificity and affinity, and the presence of other protein-protein interaction domains, which help determine subcellular localization and specific function in the endocytic pathway. SNX2 is a component of the retromer complex, a membrane coat multimeric complex required for endosomal retrieval of lysosomal hydrolase receptors to the Golgi. The retromer consists of a cargo-recognition subcomplex and a subcomplex formed by a dimer of sorting nexins (SNX1 and/or SNX2), which ensures efficient cargo sort
Probab=98.22 E-value=5.5e-06 Score=80.98 Aligned_cols=116 Identities=13% Similarity=0.245 Sum_probs=68.9
Q ss_pred EEEeeeeecCCCCCCcceeEEEEEEEe-----cceEEEEEEehhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-hcCCC
Q 002219 46 ASIVSVSRPDAGDISPMLLSYTIEVQY-----KQFKWKLVKKASQVFYLHFALKRRAFFEEIQEKQEQVKEWLQ-NLGMG 119 (952)
Q Consensus 46 v~I~~~er~~s~~~~~~~~~Y~Iel~~-----g~~~W~v~r~~~~f~~Lh~~lk~~~~~~~~~~~~~~~~~~~~-~~~~~ 119 (952)
++|.+-+....+. ..+++|+|+.+. +.=.|+|.|||+||..||.+|+.. + .+ .+-+|
T Consensus 3 i~V~dP~~~~~g~--~~y~~Y~I~~~t~~~~~~~~~~~V~RRYsdF~~L~~~L~~~------------~---~~~g~~iP 65 (124)
T cd07282 3 IGVSDPEKVGDGM--NAYMAYRVTTKTSLSMFSRSEFSVRRRFSDFLGLHSKLASK------------Y---LHVGYIVP 65 (124)
T ss_pred EEEeCCeEecCCc--cCeEEEEEEeccCCCccCCCceEEEEehHHHHHHHHHHHHh------------C---CCCCceeC
Confidence 4555555433322 358999999863 223799999999999999988731 0 00 00011
Q ss_pred CCccccccCccccccccccccccccCCCCCCCCCCCCCCccccCCCcchHHHHHHHHHHHHHHhccccccchhhhheeee
Q 002219 120 DHMAVVQEDDEGDEIAVNHDESSKKRDVPANAALPVIRPALGRQHSMSDRAKVAMQQYLNHFLGNMDIVNSREVCKFLEA 199 (952)
Q Consensus 120 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~lp~~~~~~~~~~~~~~r~~~~LE~YL~~lL~~~~~~n~~~l~~Flev 199 (952)
+-.++. +-....+..++... ..+.+-+.||..||.||+.++..+.++++..+..|||.
T Consensus 66 plP~K~---------------------~~~~~~~~~~~~~~-~~~~fie~Rr~~Le~fL~~i~~~p~l~~s~~~~~FL~~ 123 (124)
T cd07282 66 PAPEKS---------------------IVGMTKVKVGKEDS-SSTEFVEKRRAALERYLQRTVKHPTLLQDPDLRQFLES 123 (124)
T ss_pred CCCCCc---------------------cccccccccccccc-cCHHHHHHHHHHHHHHHHHHhcCcccccChHHHHhhcC
Confidence 110000 00000011111111 11233445567999999999999999999999999996
Q ss_pred c
Q 002219 200 S 200 (952)
Q Consensus 200 S 200 (952)
|
T Consensus 124 ~ 124 (124)
T cd07282 124 S 124 (124)
T ss_pred C
Confidence 5
No 82
>cd01246 PH_oxysterol_bp Oxysterol binding protein (OSBP) Pleckstrin homology (PH) domain. Oxysterol binding protein (OSBP) Pleckstrin homology (PH) domain. Oxysterol binding proteins are a multigene family that is conserved in yeast, flies, worms, mammals and plants. They all contain a C-terminal oxysterol binding domain, and most contain an N-terminal PH domain. OSBP PH domains bind to membrane phosphoinositides and thus likely play an important role in intracellular targeting. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains.
Probab=98.22 E-value=1.2e-05 Score=72.49 Aligned_cols=75 Identities=25% Similarity=0.501 Sum_probs=59.4
Q ss_pred CCcceEEEEEeCCeEEEEeCCCCC--CccEEEEEeCCCCCCCCCCCcccccccccccCCcceeEEEEeCc-eEEEEEecc
Q 002219 245 DNWQKVWAVLKPGFLALLADPFDT--KPMDIIVFDVLPASDGNGEGRVSLATEVKERNPLRHAFKVTCGV-RSIRLRTRT 321 (952)
Q Consensus 245 ~rw~kRWfvVKdSfL~yv~d~~~~--~~~~v~l~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~-r~l~l~~~s 321 (952)
..|++|||+++++.|.|+++.... .+...+.++.. .+.. .....+.|.|.+.+ +.+.|.+.+
T Consensus 13 ~~W~~r~~vl~~~~L~~~~~~~~~~~~~~~~i~l~~~---------~~~~------~~~~~~~F~i~~~~~~~~~~~a~s 77 (91)
T cd01246 13 KGWQKRWFVLDNGLLSYYKNKSSMRGKPRGTILLSGA---------VISE------DDSDDKCFTIDTGGDKTLHLRANS 77 (91)
T ss_pred CCceeeEEEEECCEEEEEecCccCCCCceEEEEeceE---------EEEE------CCCCCcEEEEEcCCCCEEEEECCC
Confidence 469999999999999999987766 77777777641 1211 11226889998877 999999999
Q ss_pred hhhHHHHHHHHHh
Q 002219 322 GAKVRDWVAAIND 334 (952)
Q Consensus 322 ~~~~~~w~~~i~~ 334 (952)
...+.+|..+|..
T Consensus 78 ~~e~~~Wi~al~~ 90 (91)
T cd01246 78 EEERQRWVDALEL 90 (91)
T ss_pred HHHHHHHHHHHHh
Confidence 9999999999975
No 83
>cd06868 PX_HS1BP3 The phosphoinositide binding Phox Homology domain of HS1BP3. The PX domain is a phosphoinositide (PI) binding module present in many proteins with diverse functions such as cell signaling, vesicular trafficking, protein sorting, and lipid modification, among others. Hematopoietic lineage cell-specific protein-1 (HS1) binding protein 3 (HS1BP3) associates with HS1 proteins through their SH3 domains, suggesting a role in mediating signaling. It has been reported that HS1BP3 might affect the IL-2 signaling pathway in hematopoietic lineage cells. Mutations in HS1BP3 may also be associated with familial Parkinson disease and essential tremor. HS1BP3 contains a PX domain, a leucine zipper, motifs similar to immunoreceptor tyrosine-based inhibitory motif and proline-rich regions. The PX domain interacts with PIs and plays a role in targeting proteins to PI-enriched membranes.
Probab=98.22 E-value=4.9e-06 Score=80.85 Aligned_cols=88 Identities=19% Similarity=0.209 Sum_probs=60.9
Q ss_pred ceeEEEEEEEec--c-----------eEEEEEEehhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCccccccC
Q 002219 62 MLLSYTIEVQYK--Q-----------FKWKLVKKASQVFYLHFALKRRAFFEEIQEKQEQVKEWLQNLGMGDHMAVVQED 128 (952)
Q Consensus 62 ~~~~Y~Iel~~g--~-----------~~W~v~r~~~~f~~Lh~~lk~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 128 (952)
.+++|+|.+.-. . ..|+|.|||+||..||..|+. ..|-
T Consensus 19 ~y~~Y~I~~~t~~~~~~~~~~~~~~~~~~~V~RRYsdF~~L~~~L~~-------------------~~p~---------- 69 (120)
T cd06868 19 GHVLYQIVVVTRLAAFKSAKHKEEDVVQFMVSKKYSEFEELYKKLSE-------------------KYPG---------- 69 (120)
T ss_pred CeEEEEEEEEeCchhccCcccccCCceeEEEeCCcHHHHHHHHHHHH-------------------HCCC----------
Confidence 489999986532 1 379999999999999998873 1110
Q ss_pred ccccccccccccccccCCCCCCCCCCCCCCccccCCCcchHHHHHHHHHHHHHHhccccccchhhhheeee
Q 002219 129 DEGDEIAVNHDESSKKRDVPANAALPVIRPALGRQHSMSDRAKVAMQQYLNHFLGNMDIVNSREVCKFLEA 199 (952)
Q Consensus 129 ~~~~~~~~~~~~~~~~~~~p~~~~lp~~~~~~~~~~~~~~r~~~~LE~YL~~lL~~~~~~n~~~l~~Flev 199 (952)
..+|. ||.-+ .++. +..-..||..||+||+.++.++.++++..+.+||++
T Consensus 70 ----------------~~iPp---lP~K~-~~~~-~~~ie~Rr~~Le~fL~~i~~~p~l~~s~~~~~FL~~ 119 (120)
T cd06868 70 ----------------TILPP---LPRKA-LFVS-ESDIRERRAAFNDFMRFISKDEKLANCPELLEFLGV 119 (120)
T ss_pred ----------------CCCCC---CCCCc-ccCC-HHHHHHHHHHHHHHHHHHHcChhhhcCHHHHHHhcC
Confidence 00122 33211 1222 233334567999999999999999999999999986
No 84
>cd07287 PX_RPK118_like The phosphoinositide binding Phox Homology domain of RPK118-like proteins. The PX domain is a phosphoinositide (PI) binding module present in many proteins with diverse functions such as cell signaling, vesicular trafficking, protein sorting, and lipid modification, among others. Members of this subfamily bear similarity to human RPK118, which contains an N-terminal PX domain, a Microtubule Interacting and Trafficking (MIT) domain, and a kinase domain. RPK118 binds sphingosine kinase, a key enzyme in the synthesis of sphingosine 1-phosphate (SPP), a lipid messenger involved in many cellular events. RPK118 may be involved in transmitting SPP-mediated signaling. It also binds the antioxidant peroxiredoxin-3 (PRDX3) and may be involved in the transport of PRDX3 from the cytoplasm to its site of function in the mitochondria. Members of this subfamily also show similarity to sorting nexin 15 (SNX15), which contains PX and MIT domains but does not contain a kinase doma
Probab=98.20 E-value=4.6e-06 Score=80.86 Aligned_cols=92 Identities=16% Similarity=0.183 Sum_probs=61.6
Q ss_pred eeEEEEEEEecc-------eEEEEEEehhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCccccccCccccccc
Q 002219 63 LLSYTIEVQYKQ-------FKWKLVKKASQVFYLHFALKRRAFFEEIQEKQEQVKEWLQNLGMGDHMAVVQEDDEGDEIA 135 (952)
Q Consensus 63 ~~~Y~Iel~~g~-------~~W~v~r~~~~f~~Lh~~lk~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 135 (952)
+++|.|+...+. -.|+|.|+|+||..||..|+. +++... .-+
T Consensus 17 yt~Y~V~~~~~~~~~~~~~~~~~V~RRYSDF~~L~~~L~~------------~~~~~~-~~~------------------ 65 (118)
T cd07287 17 YTVYKVTARIVSRKNPEDVQEIVVWKRYSDFKKLHKDLWQ------------IHKNLC-RQS------------------ 65 (118)
T ss_pred eEEEEEEEEecCCCCcccceeEEEeCCchHHHHHHHHHHH------------hccccc-cCC------------------
Confidence 899999987664 479999999999999998873 111100 000
Q ss_pred cccccccccCCCCCCCCCCCCCCcccc-CCCcchHHHHHHHHHHHHHHhccccccchhhhheee
Q 002219 136 VNHDESSKKRDVPANAALPVIRPALGR-QHSMSDRAKVAMQQYLNHFLGNMDIVNSREVCKFLE 198 (952)
Q Consensus 136 ~~~~~~~~~~~~p~~~~lp~~~~~~~~-~~~~~~r~~~~LE~YL~~lL~~~~~~n~~~l~~Fle 198 (952)
.-+|. +|. ...+++ ....-+.||..||+||+.+..++.++++..+.+||+
T Consensus 66 ---------~~~Pp---~p~-k~~~g~~d~~fIe~RR~~Le~fL~~i~~~p~l~~s~~~~~Fl~ 116 (118)
T cd07287 66 ---------ELFPP---FAK-AKVFGRFDESVIEERRQCAEDLLQFSANIPALYNSSQLEDFFK 116 (118)
T ss_pred ---------cccCC---CCC-ceeecCCCHHHHHHHHHHHHHHHHHHhcCccccCChHHHHHhc
Confidence 00111 221 011222 233444556799999999998898999999999996
No 85
>cd06898 PX_SNX10 The phosphoinositide binding Phox Homology domain of Sorting Nexin 10. The PX domain is a phosphoinositide (PI) binding module present in many proteins with diverse functions. Sorting nexins (SNXs) make up the largest group among PX domain containing proteins. They are involved in regulating membrane traffic and protein sorting in the endosomal system. The PX domain of SNXs binds PIs and targets the protein to PI-enriched membranes. SNXs differ from each other in PI-binding specificity and affinity, and the presence of other protein-protein interaction domains, which help determine subcellular localization and specific function in the endocytic pathway. Some SNXs are localized in early endosome structures such as clathrin-coated pits, while others are located in late structures of the endocytic pathway. SNX10 may be involved in the regulation of endosome homeostasis. Its expression induces the formation of giant vacuoles in mammalian cells.
Probab=98.20 E-value=7e-06 Score=78.95 Aligned_cols=90 Identities=17% Similarity=0.303 Sum_probs=62.2
Q ss_pred cceeEEEEEEEecc-----eEEEEEEehhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCccccccCccccccc
Q 002219 61 PMLLSYTIEVQYKQ-----FKWKLVKKASQVFYLHFALKRRAFFEEIQEKQEQVKEWLQNLGMGDHMAVVQEDDEGDEIA 135 (952)
Q Consensus 61 ~~~~~Y~Iel~~g~-----~~W~v~r~~~~f~~Lh~~lk~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 135 (952)
..+++|.|.++.+. -.|+|.|||+||..||.+|+.. .....+
T Consensus 16 ~~y~~Y~I~~~~~~~~~~~~~~~v~RRYsdF~~L~~~L~~~----------------~~~~~~----------------- 62 (113)
T cd06898 16 GSYTDYEIFLHTNSMCFTLKTSCVRRRYSEFVWLRNRLQKN----------------ALLIQL----------------- 62 (113)
T ss_pred CCeEEEEEEEEeCCCccCcCceEEEcchHHHHHHHHHHHHH----------------CCCCcC-----------------
Confidence 35899999998664 3679999999999999977730 001111
Q ss_pred cccccccccCCCCCCCCCCCCCCcccc-C-CCcchHHHHHHHHHHHHHHhccccccchhhhheeee
Q 002219 136 VNHDESSKKRDVPANAALPVIRPALGR-Q-HSMSDRAKVAMQQYLNHFLGNMDIVNSREVCKFLEA 199 (952)
Q Consensus 136 ~~~~~~~~~~~~p~~~~lp~~~~~~~~-~-~~~~~r~~~~LE~YL~~lL~~~~~~n~~~l~~Flev 199 (952)
|. ||.-+ .+++ . +..-+.||..||.||+.++.++.+.++..+..||+.
T Consensus 63 ------------p~---lP~K~-~~~~~~~~~fie~Rr~~L~~fL~~i~~~p~l~~s~~l~~FL~~ 112 (113)
T cd06898 63 ------------PS---LPPKN-LFGRFNNEGFIEERQQGLQDFLEKVLQTPLLLSDSRLHLFLQT 112 (113)
T ss_pred ------------CC---CCCCc-cccCCCCHHHHHHHHHHHHHHHHHHHcChhhccChHHHHhccC
Confidence 11 22211 1111 1 233334567999999999999999999999999974
No 86
>cd06893 PX_SNX19 The phosphoinositide binding Phox Homology domain of Sorting Nexin 19. The PX domain is a phosphoinositide (PI) binding module present in many proteins with diverse functions. Sorting nexins (SNXs) make up the largest group among PX domain containing proteins. They are involved in regulating membrane traffic and protein sorting in the endosomal system. The PX domain of SNXs binds PIs and targets the protein to PI-enriched membranes. SNXs differ from each other in PI-binding specificity and affinity, and the presence of other protein-protein interaction domains, which help determine subcellular localization and specific function in the endocytic pathway. SNX19 contains an N-terminal PXA domain, a central PX domain, and a C-terminal domain that is conserved in some SNXs. These domains are also found in SNX13 and SNX14, which also contain a regulator of G protein signaling (RGS) domain in between the PXA and PX domains. SNX19 interacts with IA-2, a major autoantigen found
Probab=98.19 E-value=3.5e-06 Score=83.20 Aligned_cols=34 Identities=24% Similarity=0.335 Sum_probs=29.5
Q ss_pred cchHHHHHHHHHHHHHHhccccccchhhhheeee
Q 002219 166 MSDRAKVAMQQYLNHFLGNMDIVNSREVCKFLEA 199 (952)
Q Consensus 166 ~~~r~~~~LE~YL~~lL~~~~~~n~~~l~~Flev 199 (952)
+-+.||..||.||+.++.++.++++.++.+||.+
T Consensus 98 fie~Rr~~Le~fL~~l~~~p~l~~s~~l~~FL~~ 131 (132)
T cd06893 98 KIEARRGLLETFLRQLCSIPEISNSEEVQEFLAY 131 (132)
T ss_pred HHHHHHHHHHHHHHHHHcCHhhhcCHHHHHHHcc
Confidence 3445567999999999999999999999999975
No 87
>cd01247 PH_GPBP Goodpasture antigen binding protein (GPBP) Pleckstrin homology (PH) domain. Goodpasture antigen binding protein (GPBP) Pleckstrin homology (PH) domain. The GPBP protein is a kinase that phosphorylates an N-terminal region of the alpha 3 chain of type IV collagen , which is commonly known as the goodpasture antigen. It has has an N-terminal PH domain and a C-terminal START domain. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains. PH domains are found in cellular signaling proteins such as serine/threonine kinase, tyrosine kinsases, regulators of G-proteins, endocytotic GTPases, adaptors, as well as cyt
Probab=98.19 E-value=1.6e-05 Score=73.51 Aligned_cols=75 Identities=17% Similarity=0.263 Sum_probs=55.0
Q ss_pred CCcceEEEEEeCCeEEEEeCCCCC--CccEEEEEeCCCCCCCCCCCcccccccccccCCcceeEEEEeCc-eEEEEEecc
Q 002219 245 DNWQKVWAVLKPGFLALLADPFDT--KPMDIIVFDVLPASDGNGEGRVSLATEVKERNPLRHAFKVTCGV-RSIRLRTRT 321 (952)
Q Consensus 245 ~rw~kRWfvVKdSfL~yv~d~~~~--~~~~v~l~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~-r~l~l~~~s 321 (952)
..|++|||||+++.|.|+++..+. .++.+|-+.. ..+. . .......|.|...+ |...|++.|
T Consensus 13 k~Wk~RwFvL~~g~L~Yyk~~~~~~~~~~G~I~L~~---------~~i~-~-----~~~~~~~F~i~~~~~r~~~L~A~s 77 (91)
T cd01247 13 NGWQDRYFVLKEGNLSYYKSEAEKSHGCRGSIFLKK---------AIIA-A-----HEFDENRFDISVNENVVWYLRAEN 77 (91)
T ss_pred CCCceEEEEEECCEEEEEecCccCcCCCcEEEECcc---------cEEE-c-----CCCCCCEEEEEeCCCeEEEEEeCC
Confidence 579999999999999999986653 3566665542 1111 1 11124678885555 999999999
Q ss_pred hhhHHHHHHHHHh
Q 002219 322 GAKVRDWVAAIND 334 (952)
Q Consensus 322 ~~~~~~w~~~i~~ 334 (952)
......|+.+|+.
T Consensus 78 ~~e~~~Wi~al~~ 90 (91)
T cd01247 78 SQSRLLWMDSVVR 90 (91)
T ss_pred HHHHHHHHHHHhh
Confidence 9999999999975
No 88
>cd01250 PH_centaurin Centaurin Pleckstrin homology (PH) domain. Centaurin Pleckstrin homology (PH) domain. Centaurin beta and gamma consist of a PH domain, an ArfGAP domain and three ankyrin repeats. Centaurain gamma also has an N-terminal Ras homology domain. Centaurin alpha has a different domain architecture and its PH domain is in a different subfamily. Centaurin can bind to phosphatidlyinositol (3,4,5)P3. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains.
Probab=98.17 E-value=1.4e-05 Score=72.51 Aligned_cols=91 Identities=23% Similarity=0.411 Sum_probs=63.2
Q ss_pred ceeEEEeeecCCccCCCCCCcccccCCCccccCCcceEEEEEeCCeEEEEeCCCC--CCccEEEEEeCCCCCCCCCCCcc
Q 002219 213 KEDYVMAKHLPKISRNDDSRKCCCCPLFTCCNDNWQKVWAVLKPGFLALLADPFD--TKPMDIIVFDVLPASDGNGEGRV 290 (952)
Q Consensus 213 KEG~l~kr~~~~~~G~~~~~~~~~~~~~~~~~~rw~kRWfvVKdSfL~yv~d~~~--~~~~~v~l~D~~~~~~~~~~~~~ 290 (952)
|||||.+++... ...|++|||+++++.|.|.+++.. ..+...+-++. ..+
T Consensus 1 k~G~L~kk~~~~-------------------~~~W~kr~~~L~~~~l~~y~~~~~~~~~~~~~i~l~~---------~~v 52 (94)
T cd01250 1 KQGYLYKRSSKS-------------------NKEWKKRWFVLKNGQLTYHHRLKDYDNAHVKEIDLRR---------CTV 52 (94)
T ss_pred CcceEEEECCCc-------------------CCCceEEEEEEeCCeEEEEcCCcccccccceEEeccc---------eEE
Confidence 799998874110 147999999999999999987654 22332322221 112
Q ss_pred cccccccccCCcceeEEEEeCceEEEEEecchhhHHHHHHHHHh
Q 002219 291 SLATEVKERNPLRHAFKVTCGVRSIRLRTRTGAKVRDWVAAIND 334 (952)
Q Consensus 291 ~~~~~~~~~~~~~~~~~i~~~~r~l~l~~~s~~~~~~w~~~i~~ 334 (952)
.... +.....+.|.|....+.+.|.+.+...+.+|+.+|..
T Consensus 53 ~~~~---~~~~~~~~f~i~~~~~~~~f~a~s~~~~~~Wi~al~~ 93 (94)
T cd01250 53 RHNG---KQPDRRFCFEVISPTKTWHFQADSEEERDDWISAIQE 93 (94)
T ss_pred ecCc---cccCCceEEEEEcCCcEEEEECCCHHHHHHHHHHHhc
Confidence 1111 1112468899999999999999999999999999974
No 89
>cd01257 PH_IRS Insulin receptor substrate (IRS) pleckstrin homology (PH) domain. Insulin receptor substrate (IRS) pleckstrin homology (PH) domain. PH domains are only found in eukaryotes, and are often involved in targeting proteins to the plasma membrane via lipid binding. PH domains are found in cellular signaling proteins such as serine/threonine kinase, tyrosine kinsases, regulators of G-proteins, endocytotic GTPases, adaptors, a well as cytoskeletal associated molecules and in lipid associated enzymes. The IRS PH domain targets IRS molecules to the plasma membrane, usually in response to insulin stimulation.
Probab=98.17 E-value=1.2e-05 Score=75.92 Aligned_cols=77 Identities=14% Similarity=0.216 Sum_probs=59.5
Q ss_pred CcceEEEEEeCC------eEEEEeCCC-----CCCccEEEEEeCCCCCCCCCCCcccccccccccCCcceeEEEEeCceE
Q 002219 246 NWQKVWAVLKPG------FLALLADPF-----DTKPMDIIVFDVLPASDGNGEGRVSLATEVKERNPLRHAFKVTCGVRS 314 (952)
Q Consensus 246 rw~kRWfvVKdS------fL~yv~d~~-----~~~~~~v~l~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~r~ 314 (952)
.|+|||||+|.. .|.|+++-- +..|..||-++.-+.+. . ......+|+|.|.+..|.
T Consensus 13 ~~kkRwFVLr~~~~~~p~~Leyyk~ek~~~~~~~~p~~vI~L~~c~~v~----------~--~~d~k~~~~f~i~t~dr~ 80 (101)
T cd01257 13 SMHKRFFVLRAESSGGPARLEYYENEKKFLQKGSAPKRVIPLESCFNIN----------K--RADAKHRHLIALYTRDEY 80 (101)
T ss_pred CcEeEEEEEecCCCCCCceEEEECChhhccccCCCceEEEEccceEEEe----------e--ccccccCeEEEEEeCCce
Confidence 689999999988 799997632 26799999887532221 1 011123589999999999
Q ss_pred EEEEecchhhHHHHHHHHHh
Q 002219 315 IRLRTRTGAKVRDWVAAIND 334 (952)
Q Consensus 315 l~l~~~s~~~~~~w~~~i~~ 334 (952)
..|.|.|+....+|..+|.+
T Consensus 81 f~l~aese~E~~~Wi~~i~~ 100 (101)
T cd01257 81 FAVAAENEAEQDSWYQALLE 100 (101)
T ss_pred EEEEeCCHHHHHHHHHHHhh
Confidence 99999999999999999875
No 90
>cd06864 PX_SNX4 The phosphoinositide binding Phox Homology domain of Sorting Nexin 4. The PX domain is a phosphoinositide (PI) binding module present in many proteins with diverse functions. Sorting nexins (SNXs) make up the largest group among PX domain containing proteins. They are involved in regulating membrane traffic and protein sorting in the endosomal system. The PX domain of SNXs binds PIs and targets the protein to PI-enriched membranes. SNXs differ from each other in PI-binding specificity and affinity, and the presence of other protein-protein interaction domains, which help determine subcellular localization and specific function in the endocytic pathway. SNX4 is involved in recycling traffic from the sorting endosome (post-Golgi endosome) back to the late Golgi. It shows a similar domain architecture as SNX1-2, among others, containing a Bin/Amphiphysin/Rvs (BAR) domain, which detects membrane curvature, C-terminal to the PX domain. SNX4 is implicated in the regulation of
Probab=98.15 E-value=8e-06 Score=80.34 Aligned_cols=106 Identities=15% Similarity=0.217 Sum_probs=69.2
Q ss_pred eEEEeeeeecCCCCC---CcceeEEEEEEEecc---------eEEEEEEehhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002219 45 KASIVSVSRPDAGDI---SPMLLSYTIEVQYKQ---------FKWKLVKKASQVFYLHFALKRRAFFEEIQEKQEQVKEW 112 (952)
Q Consensus 45 ~v~I~~~er~~s~~~---~~~~~~Y~Iel~~g~---------~~W~v~r~~~~f~~Lh~~lk~~~~~~~~~~~~~~~~~~ 112 (952)
+++|++.|+...+.. ...+++|+|+++-.. -.|+|.|||+||..||.+|+. .+
T Consensus 2 ~i~v~~~e~~~~~~~~~~~~~y~vY~I~~~~~~~~~~~~~~~~~~~V~RRYsdF~~L~~~L~~------------~~--- 66 (129)
T cd06864 2 EITVTEAEKRTGGSAMNLKETYTVYLIETKIVEHESEEGLSKKLSSLWRRYSEFELLRNYLVV------------TY--- 66 (129)
T ss_pred eeEecChhhccCCCCCCCCCCeEEEEEEEEecCCCcccccccCceEEEeCcHHHHHHHHHHHH------------HC---
Confidence 467778774333221 234899999999643 468899999999999998873 01
Q ss_pred HhhcCCCCCccccccCccccccccccccccccCCCCCCCCCCCCCC-------ccc-cCCCcchHHHHHHHHHHHHHHhc
Q 002219 113 LQNLGMGDHMAVVQEDDEGDEIAVNHDESSKKRDVPANAALPVIRP-------ALG-RQHSMSDRAKVAMQQYLNHFLGN 184 (952)
Q Consensus 113 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~lp~~~~-------~~~-~~~~~~~r~~~~LE~YL~~lL~~ 184 (952)
...-+|+ ||.-+. ..+ .....-+.||..||.||+.++.+
T Consensus 67 -p~~~iPp--------------------------------lP~K~~~~~~~~~~~~~~~~~fie~Rr~~Le~fL~~i~~~ 113 (129)
T cd06864 67 -PYVIVPP--------------------------------LPEKRAMFMWQKLSSDTFDPDFVERRRAGLENFLLRVAGH 113 (129)
T ss_pred -CCCCCCC--------------------------------CCCcceecccccccccCCCHHHHHHHHHHHHHHHHHHHcC
Confidence 1111111 221000 000 01233345567999999999999
Q ss_pred cccccchhhhheee
Q 002219 185 MDIVNSREVCKFLE 198 (952)
Q Consensus 185 ~~~~n~~~l~~Fle 198 (952)
+.++++..+.+||.
T Consensus 114 p~l~~s~~l~~FL~ 127 (129)
T cd06864 114 PELCQDKIFLEFLT 127 (129)
T ss_pred hhhhcCcHHHHhcC
Confidence 99999999999986
No 91
>cd06866 PX_SNX8_Mvp1p_like The phosphoinositide binding Phox Homology domain of Sorting Nexin 8 and yeast Mvp1p. The PX domain is a phosphoinositide (PI) binding module present in many proteins with diverse functions. Sorting nexins (SNXs) make up the largest group among PX domain containing proteins. They are involved in regulating membrane traffic and protein sorting in the endosomal system. The PX domain of SNXs binds PIs and targets the protein to PI-enriched membranes. SNXs differ from each other in PI-binding specificity and affinity, and the presence of other protein-protein interaction domains, which help determine subcellular localization and specific function in the endocytic pathway. Some SNXs are localized in early endosome structures such as clathrin-coated pits, while others are located in late structures of the endocytic pathway. SNX8 and the yeast counterpart Mvp1p are involved in sorting and delivery of late-Golgi proteins, such as carboxypeptidase Y, to vacuoles.
Probab=98.14 E-value=1.2e-05 Score=76.29 Aligned_cols=87 Identities=22% Similarity=0.318 Sum_probs=60.4
Q ss_pred ceeEEEEEEEecceEEEEEEehhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCccccccCccccccccccccc
Q 002219 62 MLLSYTIEVQYKQFKWKLVKKASQVFYLHFALKRRAFFEEIQEKQEQVKEWLQNLGMGDHMAVVQEDDEGDEIAVNHDES 141 (952)
Q Consensus 62 ~~~~Y~Iel~~g~~~W~v~r~~~~f~~Lh~~lk~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 141 (952)
.+++|.|+.+- ..|+|.|||+||..||.+|+. ..|-
T Consensus 17 ~y~~Y~i~~~~--~~~~V~RRYsdF~~L~~~L~~-------------------~~p~----------------------- 52 (105)
T cd06866 17 KHVEYEVSSKR--FKSTVYRRYSDFVWLHEYLLK-------------------RYPY----------------------- 52 (105)
T ss_pred CCEEEEEEEec--CCEEEEEEhHHHHHHHHHHHH-------------------HCCC-----------------------
Confidence 57899999874 579999999999999998873 1110
Q ss_pred cccCCCCCCCCCCCCCCccc-cCCCcchHHHHHHHHHHHHHHhccccccchhhhheeee
Q 002219 142 SKKRDVPANAALPVIRPALG-RQHSMSDRAKVAMQQYLNHFLGNMDIVNSREVCKFLEA 199 (952)
Q Consensus 142 ~~~~~~p~~~~lp~~~~~~~-~~~~~~~r~~~~LE~YL~~lL~~~~~~n~~~l~~Flev 199 (952)
..+|. ||.- ..++ ....+-..|+..||+||+.++..+.++++..+.+||..
T Consensus 53 ---~~iP~---lP~K-~~~~~~~~~~ie~Rr~~Le~fL~~l~~~p~l~~s~~l~~FL~~ 104 (105)
T cd06866 53 ---RMVPA---LPPK-RIGGSADREFLEARRRGLSRFLNLVARHPVLSEDELVRTFLTE 104 (105)
T ss_pred ---CcCCC---CCCC-ccccCCCHHHHHHHHHHHHHHHHHHhcChhhccChHHHhhcCC
Confidence 01111 3321 1111 11233334457999999999999999999999999964
No 92
>cd06863 PX_Atg24p The phosphoinositide binding Phox Homology domain of yeast Atg24p, an autophagic degradation protein. The PX domain is a phosphoinositide (PI) binding module present in many proteins with diverse functions. The yeast Atg24p is a sorting nexin (SNX) which is involved in membrane fusion events at the vacuolar surface during pexophagy. This is facilitated via binding of Atg24p to phosphatidylinositol 3-phosphate (PI3P) through its PX domain. SNXs make up the largest group among PX domain containing proteins. They are involved in regulating membrane traffic and protein sorting in the endosomal system. The PX domain of SNXs binds PIs and targets the protein to PI-enriched membranes. SNXs differ from each other in PI-binding specificity and affinity, and the presence of other protein-protein interaction domains, which help determine subcellular localization and specific function in the endocytic pathway.
Probab=98.14 E-value=1.1e-05 Score=77.85 Aligned_cols=91 Identities=22% Similarity=0.329 Sum_probs=60.9
Q ss_pred ceeEEEEEEEecc-----eEEEEEEehhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCccccccCcccccccc
Q 002219 62 MLLSYTIEVQYKQ-----FKWKLVKKASQVFYLHFALKRRAFFEEIQEKQEQVKEWLQNLGMGDHMAVVQEDDEGDEIAV 136 (952)
Q Consensus 62 ~~~~Y~Iel~~g~-----~~W~v~r~~~~f~~Lh~~lk~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 136 (952)
.++.|+|+++-+. -.|+|.|||+||..||.+|+. .+ ...-+
T Consensus 18 ~y~~Y~I~~~t~~~~~~~~~~~V~RRYsdF~~L~~~L~~------------~~----p~~~i------------------ 63 (118)
T cd06863 18 TYISYLITTKTNLPSFSRKEFKVRRRYSDFVFLHECLSN------------DF----PACVV------------------ 63 (118)
T ss_pred CEEEEEEEEeeCCCCcccCceEEEecHHHHHHHHHHHHH------------HC----cCCcC------------------
Confidence 4899999987542 479999999999999998873 01 01111
Q ss_pred ccccccccCCCCCCCCCCCCCC--c-ccc--CCCcchHHHHHHHHHHHHHHhccccccchhhhheeeec
Q 002219 137 NHDESSKKRDVPANAALPVIRP--A-LGR--QHSMSDRAKVAMQQYLNHFLGNMDIVNSREVCKFLEAS 200 (952)
Q Consensus 137 ~~~~~~~~~~~p~~~~lp~~~~--~-~~~--~~~~~~r~~~~LE~YL~~lL~~~~~~n~~~l~~FlevS 200 (952)
|. ||.-+. . .+. ....-..+++.||.||+.++.++.++++..+..||+-|
T Consensus 64 -----------Pp---lP~K~~~~~~~~~~~~~~~ie~Rr~~Le~fL~~i~~~p~l~~s~~l~~FL~s~ 118 (118)
T cd06863 64 -----------PP---LPDKHRLEYITGDRFSPEFITRRAQSLQRFLRRISLHPVLSQSKILHQFLESS 118 (118)
T ss_pred -----------CC---CCCccccccccccCCCHHHHHHHHHHHHHHHHHHhcCcccccCcHHHhhcCCC
Confidence 11 221000 0 000 11222344579999999999999999999999999754
No 93
>cd06885 PX_SNX17_31 The phosphoinositide binding Phox Homology domain of Sorting Nexins 17 and 31. The PX domain is a phosphoinositide (PI) binding module present in many proteins with diverse functions. Members of this subfamily include sorting nexin 17 (SNX17), SNX31, and similar proteins. They contain an N-terminal PX domain followed by a truncated FERM (4.1, ezrin, radixin, and moesin) domain and a unique C-terminal region. SNXs make up the largest group among PX domain containing proteins. They are involved in regulating membrane traffic and protein sorting in the endosomal system. The PX domain of SNXs binds PIs and targets the protein to PI-enriched membranes. SNXs differ from each other in PI-binding specificity and affinity, and the presence of other protein-protein interaction domains, which help determine subcellular localization and specific function in the endocytic pathway. SNX17 is known to regulate the trafficking and processing of a number of proteins. It binds some me
Probab=98.13 E-value=8e-06 Score=77.42 Aligned_cols=86 Identities=22% Similarity=0.349 Sum_probs=58.2
Q ss_pred ceeEEEEEEEecceEEEEEEehhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCccccccCccccccccccccc
Q 002219 62 MLLSYTIEVQYKQFKWKLVKKASQVFYLHFALKRRAFFEEIQEKQEQVKEWLQNLGMGDHMAVVQEDDEGDEIAVNHDES 141 (952)
Q Consensus 62 ~~~~Y~Iel~~g~~~W~v~r~~~~f~~Lh~~lk~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 141 (952)
.+++|+|+++ |. |.+.+||+||..||.+|+. ..|.
T Consensus 17 ~y~~Y~I~v~-~~--~~~~rRYseF~~L~~~L~~-------------------~~~~----------------------- 51 (104)
T cd06885 17 TYVAYNIHIN-GV--LHCSVRYSQLHGLNEQLKK-------------------EFGN----------------------- 51 (104)
T ss_pred cEEEEEEEEC-Cc--EEEEechHHHHHHHHHHHH-------------------HcCC-----------------------
Confidence 4899999986 65 6677899999999998773 1110
Q ss_pred cccCCCCCCCCCCCCCCccccCCCcchHHHHHHHHHHHHHHhccccccchhhhheeee
Q 002219 142 SKKRDVPANAALPVIRPALGRQHSMSDRAKVAMQQYLNHFLGNMDIVNSREVCKFLEA 199 (952)
Q Consensus 142 ~~~~~~p~~~~lp~~~~~~~~~~~~~~r~~~~LE~YL~~lL~~~~~~n~~~l~~Flev 199 (952)
...|. ||.-+- ++.....-+.||..||.||+.|+..+.++++..+.+||..
T Consensus 52 ---~~~p~---lP~K~~-~~~~~~~ie~Rr~~Le~yL~~l~~~~~l~~s~~~~~FL~~ 102 (104)
T cd06885 52 ---RKLPP---FPPKKL-LPLTPAQLEERRLQLEKYLQAVVQDPRIANSDIFNSFLLN 102 (104)
T ss_pred ---CCCCC---CCCCcc-ccCCHHHHHHHHHHHHHHHHHHhcChhhccCHHHHHHHHh
Confidence 01111 332110 1111123334457999999999999999999999999864
No 94
>cd07281 PX_SNX1 The phosphoinositide binding Phox Homology domain of Sorting Nexin 1. The PX domain is a phosphoinositide (PI) binding module present in many proteins with diverse functions. Sorting nexins (SNXs) make up the largest group among PX domain containing proteins. They are involved in regulating membrane traffic and protein sorting in the endosomal system. The PX domain of SNXs binds PIs and targets the protein to PI-enriched membranes. SNXs differ from each other in PI-binding specificity and affinity, and the presence of other protein-protein interaction domains, which help determine subcellular localization and specific function in the endocytic pathway. SNX1 is both membrane associated and a cytosolic protein that exists as a tetramer in protein complexes. It can associate reversibly with membranes of the endosomal compartment, thereby coating these vesicles. SNX1 is a component of the retromer complex, a membrane coat multimeric complex required for endosomal retrieval
Probab=98.12 E-value=1.2e-05 Score=78.45 Aligned_cols=116 Identities=15% Similarity=0.216 Sum_probs=68.7
Q ss_pred EEEeeeeecCCCCCCcceeEEEEEEEec-----ceEEEEEEehhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCC
Q 002219 46 ASIVSVSRPDAGDISPMLLSYTIEVQYK-----QFKWKLVKKASQVFYLHFALKRRAFFEEIQEKQEQVKEWLQNLGMGD 120 (952)
Q Consensus 46 v~I~~~er~~s~~~~~~~~~Y~Iel~~g-----~~~W~v~r~~~~f~~Lh~~lk~~~~~~~~~~~~~~~~~~~~~~~~~~ 120 (952)
|.|.+.+....+. ..+++|+|.++-+ .=.|+|.|||+||..||.+|+.. +.. ....+|+
T Consensus 3 i~V~~p~~~~~~~--~~y~~Y~I~~~~~~~~~~~~~~~V~RRYsdF~~L~~~L~~~------------~~~--~~~~iPp 66 (124)
T cd07281 3 VSITDPEKIGDGM--NAYVVYKVTTQTSLLMFRSKHFTVKRRFSDFLGLYEKLSEK------------HSQ--NGFIVPP 66 (124)
T ss_pred EEEcCCeEeeCCc--CCeEEEEEEEecCCCccCCCceEEEeehHHHHHHHHHHHHh------------CCC--CCcEeCC
Confidence 5666666433322 3589999998865 24899999999999999988730 100 0111111
Q ss_pred CccccccCccccccccccccccccCCCCCCCCCCCCCCccccCCCcchHHHHHHHHHHHHHHhccccccchhhhheeee
Q 002219 121 HMAVVQEDDEGDEIAVNHDESSKKRDVPANAALPVIRPALGRQHSMSDRAKVAMQQYLNHFLGNMDIVNSREVCKFLEA 199 (952)
Q Consensus 121 ~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~lp~~~~~~~~~~~~~~r~~~~LE~YL~~lL~~~~~~n~~~l~~Flev 199 (952)
..++. -+ .....+.++. .......-..|+..||.||+.|+..+.++++..+.+||+.
T Consensus 67 ~P~K~--------------------~~-~~~~~~~~~~-~~~~~~fie~Rr~~Le~FL~~l~~~p~l~~s~~~~~FL~~ 123 (124)
T cd07281 67 PPEKS--------------------LI-GMTKVKVGKE-DSSSAEFLERRRAALERYLQRIVSHPSLLQDPDVREFLEK 123 (124)
T ss_pred CCCcc--------------------cc-ccchhhcccc-ccccHHHHHHHHHHHHHHHHHHhcCcccccChHHHHHhCC
Confidence 10000 00 0000000000 0111233345567999999999999999999999999974
No 95
>cd01264 PH_melted Melted pleckstrin homology (PH) domain. Melted pleckstrin homology (PH) domain. The melted protein has a C-terminal PH domain. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains. PH domains are found in cellular signaling proteins such as serine/threonine kinase, tyrosine kinsases, regulators of G-proteins, endocytotic GTPases, adaptors, as well as cytoskeletal associated molecules and in lipid associated enzymes.
Probab=98.12 E-value=1.8e-05 Score=74.64 Aligned_cols=83 Identities=16% Similarity=0.300 Sum_probs=58.7
Q ss_pred CCcceEEEEEeCCeEEEEeCCCCCCcc-EEEEEeCCCCCCCCCCCcccccccccccCCcceeEEEEeCceEEEEEecchh
Q 002219 245 DNWQKVWAVLKPGFLALLADPFDTKPM-DIIVFDVLPASDGNGEGRVSLATEVKERNPLRHAFKVTCGVRSIRLRTRTGA 323 (952)
Q Consensus 245 ~rw~kRWfvVKdSfL~yv~d~~~~~~~-~v~l~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~r~l~l~~~s~~ 323 (952)
.+|++|||+++++.|.|.++.....+. .++-+..-. .|..+.+.+......+.|.|.+.+|+..|.|.|+.
T Consensus 17 K~WkrRwF~L~~~~L~y~K~~~~~~~~~g~IdL~~~~--------sVk~~~~~~~~~~~~~~Fei~tp~rt~~l~A~se~ 88 (101)
T cd01264 17 KRWKTRYFTLSGAQLLFQKGKSKDDPDDCSIDLSKIR--------SVKAVAKKRRDRSLPKAFEIFTADKTYILKAKDEK 88 (101)
T ss_pred ecceeEEEEEeCCEEEEEeccCccCCCCceEEcccce--------EEeeccccccccccCcEEEEEcCCceEEEEeCCHH
Confidence 589999999999999999876443333 555544321 12111110001123589999999999999999999
Q ss_pred hHHHHHHHHHhc
Q 002219 324 KVRDWVAAINDA 335 (952)
Q Consensus 324 ~~~~w~~~i~~~ 335 (952)
+...|.++|..+
T Consensus 89 e~e~WI~~i~~a 100 (101)
T cd01264 89 NAEEWLQCLNIA 100 (101)
T ss_pred HHHHHHHHHHhh
Confidence 999999999864
No 96
>TIGR03705 poly_P_kin polyphosphate kinase 1. Members of this protein family are the enzyme polyphosphate kinase 1 (PPK1). This family is found in many prokaryotes and also in Dictyostelium. Sequences in the seed alignment were taken from prokaryotic consecutive two-gene pairs in which the other gene encodes an exopolyphosphatase. It synthesizes polyphosphate from the terminal phosphate of ATP but not GTP, in contrast to PPK2.
Probab=98.11 E-value=2.4e-05 Score=95.43 Aligned_cols=125 Identities=17% Similarity=0.236 Sum_probs=90.9
Q ss_pred HHHHHHHHhccC-----eEEEEeeeeccCCCCChhHHHHHHHHHHHHHHHHHHcCCceEEEEEecCCCCCCCCCCCCCch
Q 002219 767 CAYCSLIEKAEH-----FIYIENQFFISGLSGDEIIRNRVLESLYRRILRAYNEKKCFRVIIVIPLLPGFQGGVDDGGAA 841 (952)
Q Consensus 767 ~ayl~~I~~A~~-----~IYIEnqyFis~~~~~~~v~n~I~~AL~~RI~~A~~~g~~vrV~IvlPl~pgf~g~~~d~~~~ 841 (952)
...+++|+.|.+ .|.|+- |-+... .+|.+||. +|+++|+.|+| ++-+...|+.+
T Consensus 342 ~~v~~~i~~Aa~DP~V~~Ik~tl-Yr~~~~-------s~ii~aL~----~Aa~~Gk~V~v--~veLkArfde~------- 400 (672)
T TIGR03705 342 DPVVEFLRQAAEDPDVLAIKQTL-YRTSKD-------SPIIDALI----EAAENGKEVTV--VVELKARFDEE------- 400 (672)
T ss_pred HHHHHHHHHHhcCCCceEEEEEE-EEecCC-------cHHHHHHH----HHHHcCCEEEE--EEEehhhccch-------
Confidence 456789999998 899985 545432 27999997 99999955554 57777766521
Q ss_pred hHHHHHHHHHHHHHhhHHHHHHHHHHhcCCCcccccccccccccccccCCCCcccccceeeeeEEEEeCc-------EEE
Q 002219 842 SVRAIMHWQYRTICRGQNSILHNLYALLGPKTHDYISFYGLRAYGRLFEDGPVATSQVYVHSKVMIIDDS-------IAL 914 (952)
Q Consensus 842 ~~r~i~~~qy~ti~rg~~si~~~L~~~~Gv~~~~Yi~f~~lr~~~~~~~~g~~~te~iyvHSKlmIVDD~-------~~i 914 (952)
.=.+|. .+|.+ +|+.+ .||+. ...+|||+|+||.+ ++.
T Consensus 401 ---~ni~wa------------~~le~-aG~~v-----iyg~~--------------~~k~H~K~~li~r~~~~~~~~y~~ 445 (672)
T TIGR03705 401 ---ANIRWA------------RRLEE-AGVHV-----VYGVV--------------GLKTHAKLALVVRREGGELRRYVH 445 (672)
T ss_pred ---hhHHHH------------HHHHH-cCCEE-----EEcCC--------------CeeeeeEEEEEEEeeCCceEEEEE
Confidence 113343 46776 89875 33332 25899999999984 799
Q ss_pred EecccCCcCccCCCCCcceEEEEEchhhHHHhhhc
Q 002219 915 IGSANINDRSLLGSRDSEVSVGLYLFILRWELTDL 949 (952)
Q Consensus 915 IGSANin~RSm~G~rDsEi~v~i~d~~~~~~~~~~ 949 (952)
|||.|+|...- ..=++++++..+++++.++.++
T Consensus 446 igTgN~n~~ta--~~y~D~~l~t~~~~i~~d~~~~ 478 (672)
T TIGR03705 446 LGTGNYHPKTA--RLYTDLSLFTADPEIGRDVARV 478 (672)
T ss_pred ecCCCCCCccc--ccccceeEEEeChHHHHHHHHH
Confidence 99999999987 5557788888999998887654
No 97
>cd01252 PH_cytohesin Cytohesin Pleckstrin homology (PH) domain. Cytohesin Pleckstrin homology (PH) domain. Cytohesin is an ARF-Guanine nucleotide Exchange Factor (GEF), which has a Sec7-type Arf-GEFdomain and a pleckstrin homology domain. It specifically binds phosphatidylinositol-3,4,5-trisphosphate (PtdIns(3,4, 5)P3) via its PH domain and it acts as a PI 3-kinase effector mediating biological responses such as cell adhesion and membrane trafficking. PH domains are only found in eukaryotes. They share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains.
Probab=98.09 E-value=2.9e-05 Score=75.60 Aligned_cols=91 Identities=15% Similarity=0.387 Sum_probs=64.3
Q ss_pred ceeEEEeeecCCccCCCCCCcccccCCCccccCCcceEEEEEeCCeEEEEeCCCCCCccEEEEEeCCCCCCCCCCCcccc
Q 002219 213 KEDYVMAKHLPKISRNDDSRKCCCCPLFTCCNDNWQKVWAVLKPGFLALLADPFDTKPMDIIVFDVLPASDGNGEGRVSL 292 (952)
Q Consensus 213 KEG~l~kr~~~~~~G~~~~~~~~~~~~~~~~~~rw~kRWfvVKdSfL~yv~d~~~~~~~~v~l~D~~~~~~~~~~~~~~~ 292 (952)
|||||.|+. | .+ ..|++||||++++.|.|++++.+..+..+|.++.- .+..
T Consensus 2 k~G~L~K~~-----~-----------~~----~~WkkRwfvL~~~~L~yyk~~~~~~~~g~I~L~~~---------~v~~ 52 (125)
T cd01252 2 REGWLLKQG-----G-----------RV----KTWKRRWFILTDNCLYYFEYTTDKEPRGIIPLENV---------SIRE 52 (125)
T ss_pred cEEEEEEeC-----C-----------CC----CCeEeEEEEEECCEEEEEcCCCCCCceEEEECCCc---------EEEE
Confidence 899999872 1 01 57999999999999999998877888888777621 1111
Q ss_pred cccccccCCcceeEEEEe---------------------CceEEEEEecchhhHHHHHHHHHhcc
Q 002219 293 ATEVKERNPLRHAFKVTC---------------------GVRSIRLRTRTGAKVRDWVAAINDAG 336 (952)
Q Consensus 293 ~~~~~~~~~~~~~~~i~~---------------------~~r~l~l~~~s~~~~~~w~~~i~~~~ 336 (952)
. +....++.|.|.. ..+.+.|.|.+...+.+|+.+|..+.
T Consensus 53 ~----~~~~~~~~F~i~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~A~s~~e~~~Wi~al~~~~ 113 (125)
T cd01252 53 V----EDPSKPFCFELFSPSDKQQIKACKTESDGRVVEGNHSVYRISAANDEEMDEWIKSIKASI 113 (125)
T ss_pred c----ccCCCCeeEEEECCccccccccccccccccccccCceEEEEECCCHHHHHHHHHHHHHHH
Confidence 1 0112234454433 33566799999999999999999875
No 98
>cd07288 PX_SNX15 The phosphoinositide binding Phox Homology domain of Sorting Nexin 15. The PX domain is a phosphoinositide (PI) binding module present in many proteins with diverse functions. Sorting nexins (SNXs) make up the largest group among PX domain containing proteins. They are involved in regulating membrane traffic and protein sorting in the endosomal system. The PX domain of SNXs binds PIs and targets the protein to PI-enriched membranes. SNXs differ from each other in PI-binding specificity and affinity, and the presence of other protein-protein interaction domains, which help determine subcellular localization and specific function in the endocytic pathway. SNX15 contains an N-terminal PX domain and a C-terminal Microtubule Interacting and Trafficking (MIT) domain. It plays a role in protein trafficking processes in the endocytic pathway and the trans-Golgi network. The PX domain of SNX15 interacts with the PDGF receptor and is responsible for the membrane association of t
Probab=98.09 E-value=9.3e-06 Score=78.72 Aligned_cols=92 Identities=17% Similarity=0.260 Sum_probs=61.4
Q ss_pred eeEEEEEEEec-------ceEEEEEEehhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCccccccCccccccc
Q 002219 63 LLSYTIEVQYK-------QFKWKLVKKASQVFYLHFALKRRAFFEEIQEKQEQVKEWLQNLGMGDHMAVVQEDDEGDEIA 135 (952)
Q Consensus 63 ~~~Y~Iel~~g-------~~~W~v~r~~~~f~~Lh~~lk~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 135 (952)
+++|.|....+ .-.|+|.|+|+||..||.+|.. +++..+...+
T Consensus 17 yt~Y~V~~~~~~~~~~~~~~~~~V~RRYSDF~~L~~~L~~------------~~~~~~~~~~------------------ 66 (118)
T cd07288 17 YTEYKVTAQFISKKQPEDVKEVVVWKRYSDLKKLHGELAY------------THRNLFRRQE------------------ 66 (118)
T ss_pred cEEEEEEEEecCCCCCccceEEEEECCchHHHHHHHHHHH------------hcccccccCC------------------
Confidence 78999998765 2489999999999999998772 1111111111
Q ss_pred cccccccccCCCCCCCCCCCCCCcccc-CCCcchHHHHHHHHHHHHHHhccccccchhhhheee
Q 002219 136 VNHDESSKKRDVPANAALPVIRPALGR-QHSMSDRAKVAMQQYLNHFLGNMDIVNSREVCKFLE 198 (952)
Q Consensus 136 ~~~~~~~~~~~~p~~~~lp~~~~~~~~-~~~~~~r~~~~LE~YL~~lL~~~~~~n~~~l~~Fle 198 (952)
.+|. +|. +..+++ ...+-.+||.+||+||+.+..++.++++..+.+||+
T Consensus 67 ----------~~Pp---~P~-K~~~g~f~~~fIeeRR~~Le~fL~~i~~~p~l~~s~~~~~FL~ 116 (118)
T cd07288 67 ----------EFPP---FPR-AQVFGRFEAAVIEERRNAAEAMLLFTVNIPALYNSPQLKEFFR 116 (118)
T ss_pred ----------ccCC---CCC-ceeeccCCHHHHHHHHHHHHHHHHHHhCChhhcCChHHHHHHh
Confidence 1122 331 111221 123334556799999999999998999999999997
No 99
>cd01235 PH_SETbf Set binding factor Pleckstrin Homology (PH) domain. Set binding factor Pleckstrin Homology (PH) domain. Set binding factor is a myotubularin-related pseudo-phosphatase consisting of a Denn domain, a Gram domain, an inactive phosphatase domain, a SID motif and a C-terminal PH domain. Its PH domain is predicted to bind lipids based upon its ability to respond to phosphatidylinositol 3-kinase .
Probab=98.07 E-value=3.2e-05 Score=71.72 Aligned_cols=86 Identities=16% Similarity=0.261 Sum_probs=59.9
Q ss_pred CCcceEEEEEe--CCeEEEEeCCCCCCccEEEEEeCCCCCCCCCCCcccccccccccCCcceeEEEEeCceEEEEEecch
Q 002219 245 DNWQKVWAVLK--PGFLALLADPFDTKPMDIIVFDVLPASDGNGEGRVSLATEVKERNPLRHAFKVTCGVRSIRLRTRTG 322 (952)
Q Consensus 245 ~rw~kRWfvVK--dSfL~yv~d~~~~~~~~v~l~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~r~l~l~~~s~ 322 (952)
..|++|||||+ +..|.|.+++.+.++..+|-++..-.+....... +.+ ......+.|.|....|...|.|.+.
T Consensus 13 k~WkkRwFvL~~~~~~L~Yy~~~~~~~~~g~I~L~~~~~v~~~~~~~---~~~--~~~~~~~~f~i~t~~r~~~~~a~s~ 87 (101)
T cd01235 13 KGWKPRWFVLDPDKHQLRYYDDFEDTAEKGCIDLAEVKSVNLAQPGM---GAP--KHTSRKGFFDLKTSKRTYNFLAENI 87 (101)
T ss_pred CCccceEEEEECCCCEEEEecCCCCCccceEEEcceeEEEeecCCCC---CCC--CCCCCceEEEEEeCCceEEEECCCH
Confidence 57999999999 4589999988888888887666421111000000 000 0111245688888999999999999
Q ss_pred hhHHHHHHHHHhc
Q 002219 323 AKVRDWVAAINDA 335 (952)
Q Consensus 323 ~~~~~w~~~i~~~ 335 (952)
..+.+|+.+|+..
T Consensus 88 ~e~~~Wi~ai~~~ 100 (101)
T cd01235 88 NEAQRWKEKIQQC 100 (101)
T ss_pred HHHHHHHHHHHhh
Confidence 9999999999763
No 100
>cd07290 PX_PI3K_C2_beta The phosphoinositide binding Phox Homology Domain of the Beta Isoform of Class II Phosphoinositide 3-Kinases. The PX domain is a phosphoinositide (PI) binding module present in many proteins with diverse functions. The Phosphoinositide 3-Kinase (PI3K) family of enzymes catalyzes the phosphorylation of the 3-hydroxyl group of the inositol ring of phosphatidylinositol. PI3Ks play an important role in a variety of fundamental cellular processes, including cell motility, the Ras pathway, vesicle trafficking and secretion, immune cell activation and apoptosis. PI3Ks are divided into three main classes (I, II, and III) based on their substrate specificity, regulation, and domain structure. Class II PI3Ks preferentially use PI as a substrate to produce PI3P, but can also phosphorylate PI4P to produce PI(3,4)P2. They function as monomers and do not associate with any regulatory subunits. Class II enzymes contain an N-terminal Ras binding domain, a lipid binding C2 domai
Probab=98.06 E-value=2.7e-05 Score=74.36 Aligned_cols=87 Identities=20% Similarity=0.331 Sum_probs=62.7
Q ss_pred eeEEEEEEEecc--eEEEEEEehhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCccccccCcccccccccccc
Q 002219 63 LLSYTIEVQYKQ--FKWKLVKKASQVFYLHFALKRRAFFEEIQEKQEQVKEWLQNLGMGDHMAVVQEDDEGDEIAVNHDE 140 (952)
Q Consensus 63 ~~~Y~Iel~~g~--~~W~v~r~~~~f~~Lh~~lk~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 140 (952)
+.+|.|+++-.. -.|.|.|+|+||..||.+|+. .+|.
T Consensus 16 ~y~Y~I~V~~~~~~~~~~I~RrY~eF~~Lh~kLk~-------------------~FP~---------------------- 54 (109)
T cd07290 16 GYAYVVKVQREGHKEATFVQRTFEEFQELHNKLRL-------------------LFPS---------------------- 54 (109)
T ss_pred cEEEEEEEEECCCceeEEEEeeHHHHHHHHHHHHH-------------------HCcc----------------------
Confidence 567999998875 459999999999999999884 2331
Q ss_pred ccccCCCCCCCCCCCCCCccccC--CCcchHHHHHHHHHHHHHHhc-cccccchhhhheee
Q 002219 141 SSKKRDVPANAALPVIRPALGRQ--HSMSDRAKVAMQQYLNHFLGN-MDIVNSREVCKFLE 198 (952)
Q Consensus 141 ~~~~~~~p~~~~lp~~~~~~~~~--~~~~~r~~~~LE~YL~~lL~~-~~~~n~~~l~~Fle 198 (952)
..+|+ ||. +.-+++. ..+.++|+..|+.||+.||.. +.+.++..+..||.
T Consensus 55 ----~~lP~---LP~-k~~~g~s~~~~vae~R~~~L~~Yl~~Ll~~~~~Is~s~~v~~FF~ 107 (109)
T cd07290 55 ----SKLPS---FPS-RFVIGRSRGEAVAERRKEELNGYIWHLIHAPPEVAECDLVYTFFH 107 (109)
T ss_pred ----ccCCC---CCC-CcccCccccHHHHHHHHHHHHHHHHHHHcCChheecCHHHHHhcc
Confidence 01233 443 1123332 356667788999999999874 44789999999985
No 101
>cd06889 PX_NoxO1 The phosphoinositide binding Phox Homology domain of Nox Organizing protein 1. The PX domain is a phosphoinositide (PI) binding module present in many proteins with diverse functions such as cell signaling, vesicular trafficking, protein sorting, and lipid modification, among others. Nox Organizing protein 1 (NoxO1) is a critical regulator of enzyme kinetics of the nonphagocytic NADPH oxidase Nox1, which catalyzes the transfer of electrons from NADPH to molecular oxygen to form superoxide. Nox1 is expressed in colon, stomach, uterus, prostate, and vascular smooth muscle cells. NoxO1, a homolog of the p47phox subunit of phagocytic NADPH oxidase, is involved in targeting activator subunits (such as NoxA1) to Nox1. It is co-localized with Nox1 in the membranes of resting cells and directs the subcellular localization of Nox1. The PX domain is involved in targeting of proteins to PI-enriched membranes, and may also be involved in protein-protein interaction. The PX domain
Probab=98.05 E-value=4.8e-05 Score=73.89 Aligned_cols=109 Identities=20% Similarity=0.199 Sum_probs=76.9
Q ss_pred eEEEeeeeecCCCCCCcceeEEEEEEEec-ceEEEEEEehhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCcc
Q 002219 45 KASIVSVSRPDAGDISPMLLSYTIEVQYK-QFKWKLVKKASQVFYLHFALKRRAFFEEIQEKQEQVKEWLQNLGMGDHMA 123 (952)
Q Consensus 45 ~v~I~~~er~~s~~~~~~~~~Y~Iel~~g-~~~W~v~r~~~~f~~Lh~~lk~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 123 (952)
.|+.++++.+.. +.+|.|+++.- .-+|.|+|+|.||..||.+|+. .+|+..
T Consensus 7 ~v~~~g~~k~~~------h~~Y~i~V~wsdgs~~~iyR~y~eF~~lh~~L~~-------------------~FP~Ea--- 58 (121)
T cd06889 7 DVQGVGVMQKRR------HKTYMFSVLWSDGSELFVYRSLEEFRKLHKQLKE-------------------KFPVEA--- 58 (121)
T ss_pred EEEEEeeecccc------eeEEEEEEEEcCCcEEEEEEEHHHHHHHHHHHHH-------------------HCCccc---
Confidence 788889988555 56888888765 4789999999999999998883 344311
Q ss_pred ccccCccccccccccccccccCCCCCCCCCCCCCCccccC-CC--cchHHHHHHHHHHHHHHhccc-cccchhhhheeee
Q 002219 124 VVQEDDEGDEIAVNHDESSKKRDVPANAALPVIRPALGRQ-HS--MSDRAKVAMQQYLNHFLGNMD-IVNSREVCKFLEA 199 (952)
Q Consensus 124 ~~~~~~~~~~~~~~~~~~~~~~~~p~~~~lp~~~~~~~~~-~~--~~~r~~~~LE~YL~~lL~~~~-~~n~~~l~~Flev 199 (952)
+ ....+.|-+|. ||.- ..+++. .. ++..|+..|+.|+++||..+. +..+..++.||+.
T Consensus 59 ----------G----~~~~~~riLP~---lP~~-~~~~~~~~~~~~a~~R~~~L~~Y~~~Ll~lp~~Is~~~~V~~FF~p 120 (121)
T cd06889 59 ----------G----LLRSSDRVLPK---FKDA-PSLGSLKGSTSRSLARLKLLETYCQELLRLDEKVSRSPEVIQFFAP 120 (121)
T ss_pred ----------C----CCCCCCcccCC---CCCC-cccCCcccccchHHHHHHHHHHHHHHHHcCCcceecCHHHHHhcCC
Confidence 0 01123466777 5531 123433 22 466677899999999998666 5799999999975
No 102
>PF00614 PLDc: Phospholipase D Active site motif; InterPro: IPR001736 Phosphatidylcholine-hydrolysing phospholipase D (PLD) isoforms are activated by ADP-ribosylation factors (ARFs). PLD produces phosphatidic acid from phosphatidylcholine, which may be essential for the formation of certain types of transport vesicles or may be constitutive vesicular transport to signal transduction pathways. PC-hydrolysing PLD is a homologue of cardiolipin synthase, phosphatidylserine synthase, bacterial PLDs, and viral proteins. Each of these appears to possess a domain duplication which is apparent by the presence of two motifs containing well-conserved histidine, lysine, and/or asparagine residues which may contribute to the active site aspartic acid. An Escherichia coli endonuclease (nuc) and similar proteins appear to be PLD homologues but possess only one of these motifs [, , , ].; GO: 0003824 catalytic activity, 0008152 metabolic process; PDB: 3HSI_C.
Probab=98.04 E-value=2.2e-06 Score=62.31 Aligned_cols=26 Identities=35% Similarity=0.611 Sum_probs=18.1
Q ss_pred ceeeeeEEEEeCcEEEEecccCCcCc
Q 002219 899 VYVHSKVMIIDDSIALIGSANINDRS 924 (952)
Q Consensus 899 iyvHSKlmIVDD~~~iIGSANin~RS 924 (952)
...|+|++||||++++|||+||++|+
T Consensus 3 ~~~H~K~~vvD~~~a~vGg~nl~~~~ 28 (28)
T PF00614_consen 3 GSHHQKFVVVDDRVAFVGGANLCDGR 28 (28)
T ss_dssp BEE---EEEETTTEEEEE---SSHHH
T ss_pred cceeeEEEEEcCCEEEECceecCCCC
Confidence 47899999999999999999999875
No 103
>cd07295 PX_Grd19 The phosphoinositide binding Phox Homology domain of fungal Grd19. The PX domain is a phosphoinositide (PI) binding module present in many proteins with diverse functions. Sorting nexins (SNXs) make up the largest group among PX domain containing proteins. They are involved in regulating membrane traffic and protein sorting in the endosomal system. The PX domain of SNXs binds PIs and targets the protein to PI-enriched membranes. SNXs differ from each other in PI-binding specificity and affinity, and the presence of other protein-protein interaction domains, which help determine subcellular localization and specific function in the endocytic pathway. Grd19 is involved in the localization of late Golgi membrane proteins in yeast. Grp19 associates with the retromer complex, a membrane coat multimeric complex required for endosomal retrieval of lysosomal hydrolase receptors to the Golgi, and functions as a cargo-specific adaptor for the retromer.
Probab=98.03 E-value=2.2e-05 Score=75.86 Aligned_cols=90 Identities=19% Similarity=0.291 Sum_probs=60.3
Q ss_pred ceeEEEEEEEe-----cceEEEEEEehhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCccccccCcccccccc
Q 002219 62 MLLSYTIEVQY-----KQFKWKLVKKASQVFYLHFALKRRAFFEEIQEKQEQVKEWLQNLGMGDHMAVVQEDDEGDEIAV 136 (952)
Q Consensus 62 ~~~~Y~Iel~~-----g~~~W~v~r~~~~f~~Lh~~lk~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 136 (952)
.+++|.|...- ..-.|+|.|||+||..||.+|+.. + ...-
T Consensus 18 ~y~~Y~I~~~t~~~~f~~~~~~V~RRysdF~~L~~~L~~~------------~----~~~~------------------- 62 (116)
T cd07295 18 MFTDYEIVCRTNIPAFKLRVSSVRRRYSDFEYFRDILERE------------S----PRVM------------------- 62 (116)
T ss_pred CEEEEEEEEEeCCccccccceEEecChhHHHHHHHHHHHH------------C----CCCc-------------------
Confidence 58999998763 345799999999999999988730 0 0111
Q ss_pred ccccccccCCCCCCCCCCCCCCcccc-CCCcchHHHHHHHHHHHHHHhccccc-cchhhhheeeec
Q 002219 137 NHDESSKKRDVPANAALPVIRPALGR-QHSMSDRAKVAMQQYLNHFLGNMDIV-NSREVCKFLEAS 200 (952)
Q Consensus 137 ~~~~~~~~~~~p~~~~lp~~~~~~~~-~~~~~~r~~~~LE~YL~~lL~~~~~~-n~~~l~~FlevS 200 (952)
+|. ||.- ...++ .+..-+.|+..||.||+.++.++.++ ++..+.+||+..
T Consensus 63 ----------iPp---lP~K-~~~~~~~~~~ie~Rr~~Le~fL~~i~~~p~l~~~s~~~~~FL~~~ 114 (116)
T cd07295 63 ----------IPP---LPGK-IFTNRFSDEVIEERRQGLETFLQSVAGHPLLQTGSKVLAAFLQDP 114 (116)
T ss_pred ----------cCC---CCCC-ccccCCCHHHHHHHHHHHHHHHHHHhcCHhhhhCCHHHHHhcCCC
Confidence 111 3211 00111 12333345679999999999999888 688899999864
No 104
>cd07286 PX_SNX18 The phosphoinositide binding Phox Homology domain of Sorting Nexin 18. The PX domain is a phosphoinositide (PI) binding module present in many proteins with diverse functions. Sorting nexins (SNXs) make up the largest group among PX domain containing proteins. They are involved in regulating membrane traffic and protein sorting in the endosomal system. The PX domain of SNXs binds PIs and targets the protein to PI-enriched membranes. SNXs differ from each other in PI-binding specificity and affinity, and the presence of other protein-protein interaction domains, which help determine subcellular localization and specific function in the endocytic pathway. SNX18, like SNX9, contains an N-terminal Src Homology 3 (SH3) domain, a PX domain, and a C-terminal Bin/Amphiphysin/Rvs (BAR) domain, which detects membrane curvature. The PX-BAR structural unit helps determine specific membrane localization. SNX18 is localized to peripheral endosomal structures, and acts in a trafficki
Probab=98.00 E-value=2.5e-05 Score=76.65 Aligned_cols=88 Identities=15% Similarity=0.290 Sum_probs=62.0
Q ss_pred ceeEEEEEEEecceEEEEEEehhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCccccccCccccccccccccc
Q 002219 62 MLLSYTIEVQYKQFKWKLVKKASQVFYLHFALKRRAFFEEIQEKQEQVKEWLQNLGMGDHMAVVQEDDEGDEIAVNHDES 141 (952)
Q Consensus 62 ~~~~Y~Iel~~g~~~W~v~r~~~~f~~Lh~~lk~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 141 (952)
.+++|+|...++. |.|.|+|+||..||.+|.. ..|-
T Consensus 19 ~Yv~Y~I~~~~~~--~~V~RRYsDF~~L~~~L~~-------------------~~p~----------------------- 54 (127)
T cd07286 19 SYISYKLVPSHTG--LQVHRRYKHFDWLYARLAE-------------------KFPV----------------------- 54 (127)
T ss_pred CEEEEEEEEecCc--eEEECCCcHHHHHHHHHHH-------------------HCCC-----------------------
Confidence 5899999987764 8999999999999987763 1110
Q ss_pred cccCCCCCCCCCCCCCCcccc-CCCcchHHHHHHHHHHHHHHhccccccchhhhheeeec
Q 002219 142 SKKRDVPANAALPVIRPALGR-QHSMSDRAKVAMQQYLNHFLGNMDIVNSREVCKFLEAS 200 (952)
Q Consensus 142 ~~~~~~p~~~~lp~~~~~~~~-~~~~~~r~~~~LE~YL~~lL~~~~~~n~~~l~~FlevS 200 (952)
..+|. ||.-+ .+++ .+.+-.+|+..||.||+.++.++.++.+..+-.||+.+
T Consensus 55 ---~~IPp---LP~K~-~~g~f~~~FIe~Rr~~Lq~FL~ria~hp~L~~s~~~~~FL~~~ 107 (127)
T cd07286 55 ---ISVPH---IPEKQ-ATGRFEEDFISKRRKGLIWWMDHMCSHPVLARCDAFQHFLTCP 107 (127)
T ss_pred ---cEeCC---CcCCC-cCCCCCHHHHHHHHHHHHHHHHHHHcCcccccChHHHHHhcCC
Confidence 01122 33211 1111 12333355679999999999999999999999999987
No 105
>cd01266 PH_Gab Gab (Grb2-associated binder) pleckstrin homology (PH) domain. Gab (Grb2-associated binder) pleckstrin homology (PH) domain. The Gab subfamily includes several Gab proteins, Drosophila DOS and C. elegans SOC-1. They are scaffolding adaptor proteins, which possess N-terminal PH domains and a C-terminus with proline-rich regions and multiple phosphorylation sites. Following activation of growth factor receptors, Gab proteins are tyrosine phosphorylated and activate PI3K, which generates 3-phosphoinositide lipids. By binding to these lipids via the PH domain, Gab proteins remain in proximity to the receptor, leading to further signaling. While not all Gab proteins depend on the PH domain for recruitment, it is required for Gab activity. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display str
Probab=97.99 E-value=4.1e-05 Score=72.75 Aligned_cols=83 Identities=18% Similarity=0.234 Sum_probs=61.2
Q ss_pred CCcceEEEEEeCCe-------EEEEeCCCCCCccEEEEEeCCCCCCCCCCCcccccccccccCCcceeEEEEeCceEEEE
Q 002219 245 DNWQKVWAVLKPGF-------LALLADPFDTKPMDIIVFDVLPASDGNGEGRVSLATEVKERNPLRHAFKVTCGVRSIRL 317 (952)
Q Consensus 245 ~rw~kRWfvVKdSf-------L~yv~d~~~~~~~~v~l~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~r~l~l 317 (952)
..|++||||+++.- |.|++++.+.++..+|.++.-..++.. +. .. .......+.|.|....|.+.|
T Consensus 17 ~~WkrRwFvL~~~~l~~~~~~L~Yyk~~~~~k~~g~I~L~~~~~v~~~----~~--~~-~~~~~~~~~f~i~t~~r~y~l 89 (108)
T cd01266 17 TKWVRRYFVLHCGDRERNLFALEYYKTSRKFKLEFVIDLESCSQVDPG----LL--CT-AGNCIFGYGFDIETIVRDLYL 89 (108)
T ss_pred cCcEEEEEEEeccccCCCcceEEEECCCCCCccceEEECCccEEEccc----cc--cc-ccCcccceEEEEEeCCccEEE
Confidence 58999999999864 699998888899999887752111100 00 00 011123477999999999999
Q ss_pred EecchhhHHHHHHHHHh
Q 002219 318 RTRTGAKVRDWVAAIND 334 (952)
Q Consensus 318 ~~~s~~~~~~w~~~i~~ 334 (952)
.+.|...+.+|+.+|.+
T Consensus 90 ~A~s~ee~~~Wi~~I~~ 106 (108)
T cd01266 90 VAKNEEEMTLWVNCICK 106 (108)
T ss_pred EECCHHHHHHHHHHHHh
Confidence 99999999999999975
No 106
>cd06894 PX_SNX3_like The phosphoinositide binding Phox Homology domain of Sorting Nexin 3 and related proteins. The PX domain is a phosphoinositide (PI) binding module present in many proteins with diverse functions. Sorting nexins (SNXs) make up the largest group among PX domain containing proteins. They are involved in regulating membrane traffic and protein sorting in the endosomal system. The PX domain of SNXs binds PIs and targets the protein to PI-enriched membranes. SNXs differ from each other in PI-binding specificity and affinity, and the presence of other protein-protein interaction domains, which help determine subcellular localization and specific function in the endocytic pathway. This subfamily is composed of SNX3, SNX12, and fungal Grd19. Grd19 is involved in the localization of late Golgi membrane proteins in yeast. SNX3/Grp19 associates with the retromer complex, a membrane coat multimeric complex required for endosomal retrieval of lysosomal hydrolase receptors to the
Probab=97.90 E-value=5.4e-05 Score=73.94 Aligned_cols=99 Identities=13% Similarity=0.223 Sum_probs=61.9
Q ss_pred cceeEEEEEEEec-----ceEEEEEEehhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCccccccCccccccc
Q 002219 61 PMLLSYTIEVQYK-----QFKWKLVKKASQVFYLHFALKRRAFFEEIQEKQEQVKEWLQNLGMGDHMAVVQEDDEGDEIA 135 (952)
Q Consensus 61 ~~~~~Y~Iel~~g-----~~~W~v~r~~~~f~~Lh~~lk~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 135 (952)
..+++|.|+++-+ .-.|+|.|||+||..||.+|... ....+++-.++.
T Consensus 17 ~~y~~Y~I~~~t~~~~~~~~~~~V~RRYsdF~~L~~~L~~~-----------------~~~~iPpLP~K~---------- 69 (123)
T cd06894 17 KRFTDYEVRMRTNLPVFKKKESSVRRRYSDFEWLRSELERD-----------------SKIVVPPLPGKA---------- 69 (123)
T ss_pred cCEEEEEEEEecCCcccccCccEEEecCHHHHHHHHHHHHc-----------------CCCccCCCCCCc----------
Confidence 3589999998743 35799999999999999977630 011111100000
Q ss_pred cccccccccCCCCCCCCCCCCCCccc-cCCCcchHHHHHHHHHHHHHHhccccccchhhhheeeec
Q 002219 136 VNHDESSKKRDVPANAALPVIRPALG-RQHSMSDRAKVAMQQYLNHFLGNMDIVNSREVCKFLEAS 200 (952)
Q Consensus 136 ~~~~~~~~~~~~p~~~~lp~~~~~~~-~~~~~~~r~~~~LE~YL~~lL~~~~~~n~~~l~~FlevS 200 (952)
+ ...++-. ...+ .....-+.|++.||.||+.++.++.++++..+.+||+-.
T Consensus 70 -----------~--~~~~~~~-~~~~~~~~~fie~Rr~~L~~fL~~i~~hp~l~~s~~~~~FL~~~ 121 (123)
T cd06894 70 -----------L--KRQLPFR-GDDGIFEEEFIEERRKGLETFINKVAGHPLAQNEKCLHMFLQEE 121 (123)
T ss_pred -----------e--ecccccc-cccCCCCHHHHHHHHHHHHHHHHHHHcChhhccCCHHHHhcCCC
Confidence 0 0001100 0001 112333455679999999999999999999999999864
No 107
>cd07285 PX_SNX9 The phosphoinositide binding Phox Homology domain of Sorting Nexin 9. The PX domain is a phosphoinositide (PI) binding module present in many proteins with diverse functions. Sorting nexins (SNXs) make up the largest group among PX domain containing proteins. They are involved in regulating membrane traffic and protein sorting in the endosomal system. The PX domain of SNXs binds PIs and targets the protein to PI-enriched membranes. SNXs differ from each other in PI-binding specificity and affinity, and the presence of other protein-protein interaction domains, which help determine subcellular localization and specific function in the endocytic pathway. SNX9, also known as SH3PX1, is a cytosolic protein that interacts with proteins associated with clathrin-coated pits such as Cdc-42-associated tyrosine kinase 2 (ACK2). It contains an N-terminal Src Homology 3 (SH3) domain, a PX domain, and a C-terminal Bin/Amphiphysin/Rvs (BAR) domain, which detects membrane curvature. T
Probab=97.90 E-value=4.2e-05 Score=74.91 Aligned_cols=91 Identities=13% Similarity=0.145 Sum_probs=63.2
Q ss_pred ceeEEEEEEEecceEEEEEEehhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCccccccCccccccccccccc
Q 002219 62 MLLSYTIEVQYKQFKWKLVKKASQVFYLHFALKRRAFFEEIQEKQEQVKEWLQNLGMGDHMAVVQEDDEGDEIAVNHDES 141 (952)
Q Consensus 62 ~~~~Y~Iel~~g~~~W~v~r~~~~f~~Lh~~lk~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 141 (952)
.++.|+|..+.+ .|+|.|+|+||..||..|.. ++ -..+.+|+
T Consensus 19 ~Yv~Y~I~~~~~--~~~V~RRYsDF~~L~~~L~~------------~~---~~~i~vPp--------------------- 60 (126)
T cd07285 19 SYIEYQLTPTNT--NRSVNHRYKHFDWLYERLLV------------KF---GLAIPIPS--------------------- 60 (126)
T ss_pred CeEEEEEEeccC--CeEeeCCccHHHHHHHHHHH------------hc---CCCcccCC---------------------
Confidence 589999998866 58999999999999997762 00 00111111
Q ss_pred cccCCCCCCCCCCCCCCcccc-CCCcchHHHHHHHHHHHHHHhccccccchhhhheeeeccC
Q 002219 142 SKKRDVPANAALPVIRPALGR-QHSMSDRAKVAMQQYLNHFLGNMDIVNSREVCKFLEASKL 202 (952)
Q Consensus 142 ~~~~~~p~~~~lp~~~~~~~~-~~~~~~r~~~~LE~YL~~lL~~~~~~n~~~l~~FlevS~~ 202 (952)
||.-+ .+++ ...+-..|+..||.||+.++.++.++++..+..||++|.-
T Consensus 61 -----------lP~K~-~~g~f~~~FIe~Rr~~Le~FL~ri~~hP~L~~~~~l~~FL~~~~~ 110 (126)
T cd07285 61 -----------LPDKQ-VTGRFEEEFIKMRMERLQAWMTRMCRHPVISESEVFQQFLNFRDE 110 (126)
T ss_pred -----------CCCcc-ccCCCCHHHHHHHHHHHHHHHHHHHcCcCcCCCcHHHHHhCCCCH
Confidence 22111 1121 1233345567999999999999999999999999999764
No 108
>cd07293 PX_SNX3 The phosphoinositide binding Phox Homology domain of Sorting Nexin 3. The PX domain is a phosphoinositide (PI) binding module present in many proteins with diverse functions. Sorting nexins (SNXs) make up the largest group among PX domain containing proteins. They are involved in regulating membrane traffic and protein sorting in the endosomal system. The PX domain of SNXs binds PIs and targets the protein to PI-enriched membranes. SNXs differ from each other in PI-binding specificity and affinity, and the presence of other protein-protein interaction domains, which help determine subcellular localization and specific function in the endocytic pathway. SNX3 associates with early endosomes through a PX domain-mediated interaction with phosphatidylinositol-3-phosphate (PI3P). It associates with the retromer complex, a membrane coat multimeric complex required for endosomal retrieval of lysosomal hydrolase receptors to the Golgi, and functions as a cargo-specific adaptor f
Probab=97.90 E-value=5.1e-05 Score=74.17 Aligned_cols=98 Identities=19% Similarity=0.217 Sum_probs=61.8
Q ss_pred cceeEEEEEEEecc-----eEEEEEEehhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCccccccCccccccc
Q 002219 61 PMLLSYTIEVQYKQ-----FKWKLVKKASQVFYLHFALKRRAFFEEIQEKQEQVKEWLQNLGMGDHMAVVQEDDEGDEIA 135 (952)
Q Consensus 61 ~~~~~Y~Iel~~g~-----~~W~v~r~~~~f~~Lh~~lk~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 135 (952)
..+++|+|+.+-+. -.|+|.|+|+||..||..|... ....+|+-.++..
T Consensus 17 ~~y~~Y~I~~~t~~p~~~~~~~~V~RRYsDF~~L~~~L~~~-----------------~~~~iPpLP~K~~--------- 70 (123)
T cd07293 17 GRFTTYEIRLKTNLPIFKLKESTVRRRYSDFEWLRSELERE-----------------SKVVVPPLPGKAL--------- 70 (123)
T ss_pred cCEEEEEEEEEeCCCccccCceEEECCchHHHHHHHHHHhc-----------------cCCccCCCCCCch---------
Confidence 35899999988543 4899999999999999977620 0111111100000
Q ss_pred cccccccccCCCCCCCCCCCCCCccc-cCCCcchHHHHHHHHHHHHHHhccccccchhhhheeee
Q 002219 136 VNHDESSKKRDVPANAALPVIRPALG-RQHSMSDRAKVAMQQYLNHFLGNMDIVNSREVCKFLEA 199 (952)
Q Consensus 136 ~~~~~~~~~~~~p~~~~lp~~~~~~~-~~~~~~~r~~~~LE~YL~~lL~~~~~~n~~~l~~Flev 199 (952)
...++.. ...+ ..+..-++||..||.||+.++..+.++++..+..||+-
T Consensus 71 --------------~~~~~~~-~~~~~~~~~fie~Rr~~Le~FL~~i~~hP~l~~~~~l~~FL~~ 120 (123)
T cd07293 71 --------------FRQLPFR-GDDGIFDDSFIEERKQGLEQFLNKVAGHPLAQNERCLHMFLQD 120 (123)
T ss_pred --------------hhhcccc-cccCCCCHHHHHHHHHHHHHHHHHHHcCcccccCcHHHhhcCC
Confidence 0000000 0001 11233345567999999999999999999999999974
No 109
>cd06860 PX_SNX7_30_like The phosphoinositide binding Phox Homology domain of Sorting Nexins 7 and 30. The PX domain is a phosphoinositide (PI) binding module present in many proteins with diverse functions. Sorting nexins (SNXs) make up the largest group among PX domain containing proteins. They are involved in regulating membrane traffic and protein sorting in the endosomal system. The PX domain of SNXs binds PIs and targets the protein to PI-enriched membranes. SNXs differ from each other in PI-binding specificity and affinity, and the presence of other protein-protein interaction domains, which help determine subcellular localization and specific function in the endocytic pathway. Some SNXs are localized in early endosome structures such as clathrin-coated pits, while others are located in late structures of the endocytic pathway. This subfamily consists of SNX7, SNX30, and similar proteins. They harbor a Bin/Amphiphysin/Rvs (BAR) domain, which detects membrane curvature, C-terminal
Probab=97.88 E-value=5.6e-05 Score=73.03 Aligned_cols=90 Identities=14% Similarity=0.284 Sum_probs=60.5
Q ss_pred cceeEEEEEEEe-----cceEEEEEEehhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCccccccCccccccc
Q 002219 61 PMLLSYTIEVQY-----KQFKWKLVKKASQVFYLHFALKRRAFFEEIQEKQEQVKEWLQNLGMGDHMAVVQEDDEGDEIA 135 (952)
Q Consensus 61 ~~~~~Y~Iel~~-----g~~~W~v~r~~~~f~~Lh~~lk~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 135 (952)
..+++|+|+.+. +.-.|.|.|||+||..||.+|.. ++ ...-+
T Consensus 16 ~~y~~Y~I~~~~~~~~~~~~~~~V~RRysdF~~L~~~L~~------------~~----p~~~i----------------- 62 (116)
T cd06860 16 ETYITYRVTTKTTRSEFDSSEYSVRRRYQDFLWLRQKLEE------------SH----PTHII----------------- 62 (116)
T ss_pred cCEEEEEEEEeeCCCCcCCCceEEEeeHHHHHHHHHHHHH------------HC----CCCcc-----------------
Confidence 358999998874 34599999999999999998773 01 11111
Q ss_pred cccccccccCCCCCCCCCCCCCC---cccc-CCCcchHHHHHHHHHHHHHHhccccccchhhhheee
Q 002219 136 VNHDESSKKRDVPANAALPVIRP---ALGR-QHSMSDRAKVAMQQYLNHFLGNMDIVNSREVCKFLE 198 (952)
Q Consensus 136 ~~~~~~~~~~~~p~~~~lp~~~~---~~~~-~~~~~~r~~~~LE~YL~~lL~~~~~~n~~~l~~Fle 198 (952)
|. ||.-+. .+++ ...+-..|++.||.||+.+..++.++++..+..||.
T Consensus 63 ------------Pp---LP~K~~~~~~~~~~~~~fie~Rr~~Le~fL~~i~~hp~l~~s~~l~~FLt 114 (116)
T cd06860 63 ------------PP---LPEKHSVKGLLDRFSPEFVATRMRALHKFLNRIVEHPVLSFNEHLKVFLT 114 (116)
T ss_pred ------------CC---CCCcchhhhhcccCCHHHHHHHHHHHHHHHHHHHcCcccccCcHHHHhhc
Confidence 11 221110 0111 112233445699999999999999999999999985
No 110
>cd01244 PH_RasGAP_CG9209 RAS_GTPase activating protein (GAP)_CG9209 pleckstrin homology (PH) domain. RAS_GTPase activating protein (GAP)_CG9209 pleckstrin homology (PH) domain. This protein consists of two C2 domains, followed by a RasGAP domain, a PH domain and a BTK domain. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains. PH domains are found in cellular signaling proteins such as serine/threonine kinase, tyrosine kinsases, regulators of G-proteins, endocytotic GTPAses, adaptors, as well as cytoskeletal associated molecules and in lipid associated enzymes.
Probab=97.84 E-value=0.00013 Score=68.55 Aligned_cols=79 Identities=16% Similarity=0.278 Sum_probs=55.5
Q ss_pred CCcceEEEEEeCCeEEEEeCCCCCCccEEEEEeCCCCCCCCCCCcccccccccccCCcceeEEEEeCceEEEEEecchhh
Q 002219 245 DNWQKVWAVLKPGFLALLADPFDTKPMDIIVFDVLPASDGNGEGRVSLATEVKERNPLRHAFKVTCGVRSIRLRTRTGAK 324 (952)
Q Consensus 245 ~rw~kRWfvVKdSfL~yv~d~~~~~~~~v~l~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~r~l~l~~~s~~~ 324 (952)
..|++|||+|.+.-|.|.+++.. .+...|-+..-. ....++. ......+.|+|....|.+-+.|.+..+
T Consensus 19 ~n~KkRwF~Lt~~~L~Y~k~~~~-~~~g~I~L~~i~-------~ve~v~~---~~~~~~~~fqivt~~r~~yi~a~s~~E 87 (98)
T cd01244 19 LHFKKRYFQLTTTHLSWAKDVQC-KKSALIKLAAIK-------GTEPLSD---KSFVNVDIITIVCEDDTMQLQFEAPVE 87 (98)
T ss_pred cCCceeEEEECCCEEEEECCCCC-ceeeeEEccceE-------EEEEcCC---cccCCCceEEEEeCCCeEEEECCCHHH
Confidence 47999999999999999998864 333333222100 0001111 011235789999999999999999999
Q ss_pred HHHHHHHHHh
Q 002219 325 VRDWVAAIND 334 (952)
Q Consensus 325 ~~~w~~~i~~ 334 (952)
..+|..+|..
T Consensus 88 ~~~Wi~al~k 97 (98)
T cd01244 88 ATDWLNALEK 97 (98)
T ss_pred HHHHHHHHhc
Confidence 9999999875
No 111
>PF15413 PH_11: Pleckstrin homology domain; PDB: 3MDB_D 3FEH_A 3LJU_X 3FM8_C.
Probab=97.75 E-value=0.00031 Score=67.50 Aligned_cols=90 Identities=23% Similarity=0.399 Sum_probs=45.4
Q ss_pred CCcceEEEEEe-CCeEEEEeCCCCCCccEEEEEeCCCCCCCCCC----Ccc-cccc---cccccCCcceeEEEEeCceEE
Q 002219 245 DNWQKVWAVLK-PGFLALLADPFDTKPMDIIVFDVLPASDGNGE----GRV-SLAT---EVKERNPLRHAFKVTCGVRSI 315 (952)
Q Consensus 245 ~rw~kRWfvVK-dSfL~yv~d~~~~~~~~v~l~D~~~~~~~~~~----~~~-~~~~---~~~~~~~~~~~~~i~~~~r~l 315 (952)
..|++|||||+ |..|.|.+.|.+.....|++=.+. ..-..+. ... .+.. ...........+.|..+.+++
T Consensus 14 kgWk~RwFiL~k~~~L~YyK~~~~~~~~~i~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~T~~kt~ 92 (112)
T PF15413_consen 14 KGWKKRWFILRKDGVLSYYKIPRDKKDVRIIGEESS-RVIRKGDWSISRRSSRIQGIKDKNPFGEIHLKVFSIFTPTKTF 92 (112)
T ss_dssp S--EEEEEEEE-TTEEEEESS-------------TT--SB-SEEEE---GGGT-EEEES-T--SS-SSEEEEEE-SS-EE
T ss_pred cCccccEEEEEeCCEEEEeecccccccccccccchh-ceEeecccCcccccccccccccCCcccCcCCCCcEEECCCcEE
Confidence 57999999999 999999987433322222211110 0000000 000 0000 000011123567889999999
Q ss_pred EEEecchhhHHHHHHHHHhc
Q 002219 316 RLRTRTGAKVRDWVAAINDA 335 (952)
Q Consensus 316 ~l~~~s~~~~~~w~~~i~~~ 335 (952)
.|+|.+......|.++|.++
T Consensus 93 ~l~~~t~~d~~~Wi~aL~~~ 112 (112)
T PF15413_consen 93 HLRCETREDRYDWIEALQEA 112 (112)
T ss_dssp EEEESSHHHHHHHHHHHHH-
T ss_pred EEEECCHHHHHHHHHHHHhC
Confidence 99999999999999999864
No 112
>smart00233 PH Pleckstrin homology domain. Domain commonly found in eukaryotic signalling proteins. The domain family possesses multiple functions including the abilities to bind inositol phosphates, and various proteins. PH domains have been found to possess inserted domains (such as in PLC gamma, syntrophins) and to be inserted within other domains. Mutations in Brutons tyrosine kinase (Btk) within its PH domain cause X-linked agammaglobulinaemia (XLA) in patients. Point mutations cluster into the positively charged end of the molecule around the predicted binding site for phosphatidylinositol lipids.
Probab=97.70 E-value=0.00049 Score=60.92 Aligned_cols=95 Identities=23% Similarity=0.337 Sum_probs=68.7
Q ss_pred cceeEEEeeecCCccCCCCCCcccccCCCccccCCcceEEEEEeCCeEEEEeCCCC---CCccEEEEEeCCCCCCCCCCC
Q 002219 212 LKEDYVMAKHLPKISRNDDSRKCCCCPLFTCCNDNWQKVWAVLKPGFLALLADPFD---TKPMDIIVFDVLPASDGNGEG 288 (952)
Q Consensus 212 gKEG~l~kr~~~~~~G~~~~~~~~~~~~~~~~~~rw~kRWfvVKdSfL~yv~d~~~---~~~~~v~l~D~~~~~~~~~~~ 288 (952)
-+||+|.++... ....|+++|++|.+..|.|+++... ..+..++.++..
T Consensus 2 ~~~G~l~~~~~~-------------------~~~~~~~~~~~L~~~~l~~~~~~~~~~~~~~~~~i~l~~~--------- 53 (102)
T smart00233 2 IKEGWLYKKSGG-------------------KKKSWKKRYFVLFNSTLLYYKSEKAKKDYKPKGSIDLSGI--------- 53 (102)
T ss_pred ceeEEEEEeCCC-------------------ccCCceEEEEEEECCEEEEEeCCCccccCCCceEEECCcC---------
Confidence 379999887310 1157999999999999999987654 356666666631
Q ss_pred cccccccccccCCcceeEEEEeCce-EEEEEecchhhHHHHHHHHHhc
Q 002219 289 RVSLATEVKERNPLRHAFKVTCGVR-SIRLRTRTGAKVRDWVAAINDA 335 (952)
Q Consensus 289 ~~~~~~~~~~~~~~~~~~~i~~~~r-~l~l~~~s~~~~~~w~~~i~~~ 335 (952)
.+...... ......++|.|.+..+ .+.+.|.+......|..+|..+
T Consensus 54 ~v~~~~~~-~~~~~~~~f~l~~~~~~~~~f~~~s~~~~~~W~~~i~~~ 100 (102)
T smart00233 54 TVREAPDP-DSAKKPHCFEIKTADRRSYLLQAESEEEREEWVDALRKA 100 (102)
T ss_pred EEEeCCCC-ccCCCceEEEEEecCCceEEEEcCCHHHHHHHHHHHHHh
Confidence 22211110 0023578999999998 9999999999999999999875
No 113
>cd07294 PX_SNX12 The phosphoinositide binding Phox Homology domain of Sorting Nexin 12. The PX domain is a phosphoinositide (PI) binding module present in many proteins with diverse functions. Sorting nexins (SNXs) make up the largest group among PX domain containing proteins. They are involved in regulating membrane traffic and protein sorting in the endosomal system. The PX domain of SNXs binds PIs and targets the protein to PI-enriched membranes. SNXs differ from each other in PI-binding specificity and affinity, and the presence of other protein-protein interaction domains, which help determine subcellular localization and specific function in the endocytic pathway. Some SNXs are localized in early endosome structures such as clathrin-coated pits, while others are located in late structures of the endocytic pathway. The specific function of SNX12 has yet to be elucidated.
Probab=97.69 E-value=0.0002 Score=70.78 Aligned_cols=101 Identities=17% Similarity=0.262 Sum_probs=64.0
Q ss_pred ceeEEEEEEEec-----ceEEEEEEehhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCccccccCcccccccc
Q 002219 62 MLLSYTIEVQYK-----QFKWKLVKKASQVFYLHFALKRRAFFEEIQEKQEQVKEWLQNLGMGDHMAVVQEDDEGDEIAV 136 (952)
Q Consensus 62 ~~~~Y~Iel~~g-----~~~W~v~r~~~~f~~Lh~~lk~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 136 (952)
.+++|+|+.+-+ .-.|+|.|||+||..||.+|... ....+++..++.
T Consensus 20 ~yt~Y~V~~~t~~~~~~~~~~~V~RRYsDF~~L~~~L~~~-----------------~g~~iPpLP~K~----------- 71 (132)
T cd07294 20 RFTTYEVRMRTNLPIFKLKESCVRRRYSDFEWLKNELERD-----------------SKIVVPPLPGKA----------- 71 (132)
T ss_pred CEEEEEEEEEeCCCCcccceeEEeCCccHHHHHHHHHHHc-----------------CCCccCCCCCCc-----------
Confidence 489999998743 34799999999999999877630 011111110000
Q ss_pred ccccccccCCCCCCCCCCCCCCccc-cCCCcchHHHHHHHHHHHHHHhccccccchhhhheeeeccCC
Q 002219 137 NHDESSKKRDVPANAALPVIRPALG-RQHSMSDRAKVAMQQYLNHFLGNMDIVNSREVCKFLEASKLS 203 (952)
Q Consensus 137 ~~~~~~~~~~~p~~~~lp~~~~~~~-~~~~~~~r~~~~LE~YL~~lL~~~~~~n~~~l~~FlevS~~s 203 (952)
+.+ .++- ....+ ..+.+-+.|+..||.||+.++..+.++++..+..||+-+-++
T Consensus 72 ----------~~~--~~~~-~~~~~~~~~~fie~Rr~~Le~FL~~i~~hp~l~~~~~l~~FL~~~~~~ 126 (132)
T cd07294 72 ----------LKR--QLPF-RGDEGIFEESFIEERRQGLEQFINKIAGHPLAQNERCLHMFLQDETID 126 (132)
T ss_pred ----------eec--cccc-cccccCCCHHHHHHHHHHHHHHHHHHHcCcccccChHHHHhcCCCCcC
Confidence 000 0000 00000 112333344579999999999999999999999999998875
No 114
>cd07283 PX_SNX30 The phosphoinositide binding Phox Homology domain of Sorting Nexin 30. The PX domain is a phosphoinositide (PI) binding module present in many proteins with diverse functions. Sorting nexins (SNXs) make up the largest group among PX domain containing proteins. They are involved in regulating membrane traffic and protein sorting in the endosomal system. The PX domain of SNXs binds PIs and targets the protein to PI-enriched membranes. SNXs differ from each other in PI-binding specificity and affinity, and the presence of other protein-protein interaction domains, which help determine subcellular localization and specific function in the endocytic pathway. Some SNXs are localized in early endosome structures such as clathrin-coated pits, while others are located in late structures of the endocytic pathway. SNX30 harbors a Bin/Amphiphysin/Rvs (BAR) domain, which detects membrane curvature, C-terminal to the PX domain, similar to the sorting nexins SNX1-2, SNX4-8, and SNX32
Probab=97.69 E-value=0.00019 Score=69.43 Aligned_cols=89 Identities=12% Similarity=0.272 Sum_probs=60.9
Q ss_pred ceeEEEEEEEecc-----eEEEEEEehhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCccccccCcccccccc
Q 002219 62 MLLSYTIEVQYKQ-----FKWKLVKKASQVFYLHFALKRRAFFEEIQEKQEQVKEWLQNLGMGDHMAVVQEDDEGDEIAV 136 (952)
Q Consensus 62 ~~~~Y~Iel~~g~-----~~W~v~r~~~~f~~Lh~~lk~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 136 (952)
.+++|+|+.+... -.|+|.|+|+||..||..|.. ++ ....+
T Consensus 17 ~y~~Y~I~t~t~~~~~~~~~~~V~RRYsDF~~L~~~L~~------------~~----p~~~i------------------ 62 (116)
T cd07283 17 TYITYRVTTKTTRTEFDLPEYSVRRRYQDFDWLRNKLEE------------SQ----PTHLI------------------ 62 (116)
T ss_pred CeEEEEEEEecCCCCcccCceEEeCCccHHHHHHHHHHH------------hC----CCccc------------------
Confidence 4899999998753 489999999999999987762 00 11111
Q ss_pred ccccccccCCCCCCCCCCCC---CCcccc-CCCcchHHHHHHHHHHHHHHhccccccchhhhheee
Q 002219 137 NHDESSKKRDVPANAALPVI---RPALGR-QHSMSDRAKVAMQQYLNHFLGNMDIVNSREVCKFLE 198 (952)
Q Consensus 137 ~~~~~~~~~~~p~~~~lp~~---~~~~~~-~~~~~~r~~~~LE~YL~~lL~~~~~~n~~~l~~Fle 198 (952)
|. ||.- +...++ .+..-.+|+..||.||+.++.++.++++..+-.||.
T Consensus 63 -----------Pp---LP~K~~~~~~~~~~~~~fie~Rr~~Le~FL~~i~~hp~L~~s~~~~~FLt 114 (116)
T cd07283 63 -----------PP---LPEKFVVKGVVDRFSEEFVETRRKALDKFLKRIADHPVLSFNEHFNVFLT 114 (116)
T ss_pred -----------CC---CCCcccccccccCCCHHHHHHHHHHHHHHHHHHHcCcccccCcHHHHhhc
Confidence 11 2210 000111 123444556799999999999999999999999985
No 115
>PF15409 PH_8: Pleckstrin homology domain
Probab=97.67 E-value=0.00023 Score=65.70 Aligned_cols=75 Identities=21% Similarity=0.382 Sum_probs=59.1
Q ss_pred CCcceEEEEE--eCCeEEEEeCCCCCCccEEEEEeCCCCCCCCCCCcccccccccccCCcceeEEEEeCceEEEEEecch
Q 002219 245 DNWQKVWAVL--KPGFLALLADPFDTKPMDIIVFDVLPASDGNGEGRVSLATEVKERNPLRHAFKVTCGVRSIRLRTRTG 322 (952)
Q Consensus 245 ~rw~kRWfvV--KdSfL~yv~d~~~~~~~~v~l~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~r~l~l~~~s~ 322 (952)
..|.||||++ +++.|.|..++.+++++.-+-+-. ..++ .+.....|.|++|.....|++.|.
T Consensus 12 qG~~kRyFvL~~~~G~LsYy~~~~~~~~rGsi~v~~---------a~is-------~~~~~~~I~idsg~~i~hLKa~s~ 75 (89)
T PF15409_consen 12 QGWHKRYFVLDFEKGTLSYYRNQNSGKLRGSIDVSL---------AVIS-------ANKKSRRIDIDSGDEIWHLKAKSQ 75 (89)
T ss_pred CCceeEEEEEEcCCcEEEEEecCCCCeeEeEEEccc---------eEEE-------ecCCCCEEEEEcCCeEEEEEcCCH
Confidence 4699999999 999999999888887766663321 1121 223345799999999999999999
Q ss_pred hhHHHHHHHHHhc
Q 002219 323 AKVRDWVAAINDA 335 (952)
Q Consensus 323 ~~~~~w~~~i~~~ 335 (952)
.....|..+++.+
T Consensus 76 ~~f~~Wv~aL~~a 88 (89)
T PF15409_consen 76 EDFQRWVSALQKA 88 (89)
T ss_pred HHHHHHHHHHHhc
Confidence 9999999999874
No 116
>cd01241 PH_Akt Akt pleckstrin homology (PH) domain. Akt pleckstrin homology (PH) domain. Akt (Protein Kinase B (PKB)) is a phosphatidylinositol 3'-kinase (PI3K)-dependent Ser/Thr kinase. The PH domain recruits Akt to the plasma membrane by binding to phosphoinositides (PtdIns-3,4-P2) and is required for activation. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains.
Probab=97.52 E-value=0.00065 Score=64.05 Aligned_cols=92 Identities=18% Similarity=0.326 Sum_probs=52.6
Q ss_pred cceeEEEeeecCCccCCCCCCcccccCCCccccCCcceEEEEEe-CCeEE-EEeCCCCCCccEEEEEeCCCCCCCCCCCc
Q 002219 212 LKEDYVMAKHLPKISRNDDSRKCCCCPLFTCCNDNWQKVWAVLK-PGFLA-LLADPFDTKPMDIIVFDVLPASDGNGEGR 289 (952)
Q Consensus 212 gKEG~l~kr~~~~~~G~~~~~~~~~~~~~~~~~~rw~kRWfvVK-dSfL~-yv~d~~~~~~~~v~l~D~~~~~~~~~~~~ 289 (952)
.|||+|.|+.. . ...|++|||+|+ ++-|+ |-++|.+.. .+++..+. ..
T Consensus 2 ~k~G~L~K~g~----------------~----~~~Wk~R~f~L~~~~~l~~yk~~~~~~~-~~~i~l~~---------~~ 51 (102)
T cd01241 2 VKEGWLHKRGE----------------Y----IKTWRPRYFLLKSDGSFIGYKEKPEDGD-PFLPPLNN---------FS 51 (102)
T ss_pred cEEEEEEeecC----------------C----CCCCeeEEEEEeCCCeEEEEecCCCccC-ccccccCC---------eE
Confidence 48999998721 0 157999999999 77666 544453332 12222221 01
Q ss_pred ccccccccccCCcceeEEEEe------CceEEEEEecchhhHHHHHHHHHhc
Q 002219 290 VSLATEVKERNPLRHAFKVTC------GVRSIRLRTRTGAKVRDWVAAINDA 335 (952)
Q Consensus 290 ~~~~~~~~~~~~~~~~~~i~~------~~r~l~l~~~s~~~~~~w~~~i~~~ 335 (952)
+.-+.......+..+.|.|.. .+| .+.|.|.....+|..+|+..
T Consensus 52 v~~~~~~~~~~~~~~~F~i~~~~~~~~~~r--~f~a~s~ee~~eWi~ai~~v 101 (102)
T cd01241 52 VAECQLMKTERPRPNTFIIRCLQWTTVIER--TFHVESPEEREEWIHAIQTV 101 (102)
T ss_pred EeeeeeeeccCCCcceEEEEeccCCcccCE--EEEeCCHHHHHHHHHHHHhh
Confidence 100000001122346787762 233 55789999999999999764
No 117
>smart00155 PLDc Phospholipase D. Active site motifs. Phosphatidylcholine-hydrolyzing phospholipase D (PLD) isoforms are activated by ADP-ribosylation factors (ARFs). PLD produces phosphatidic acid from phosphatidylcholine, which may be essential for the formation of certain types of transport vesicles or may be constitutive vesicular transport to signal transduction pathways. PC-hydrolysing PLD is a homologue of cardiolipin synthase, phosphatidylserine synthase, bacterial PLDs, and viral proteins. Each of these appears to possess a domain duplication which is apparent by the presence of two motifs containing well-conserved histidine, lysine, aspartic acid, and/or asparagine residues which may contribute to the active site. An E. coli endonuclease (nuc) and similar proteins appear to be PLD homologues but possess only one of these motifs. The profile contained here represents only the putative active site regions, since an accurate multiple alignment of the repeat units has not be
Probab=97.52 E-value=8.2e-05 Score=53.99 Aligned_cols=23 Identities=43% Similarity=0.598 Sum_probs=21.8
Q ss_pred ccCcceEEEEeCCeEEEccccCC
Q 002219 474 WSHHEKLVIVDYQICFIGGLDLC 496 (952)
Q Consensus 474 ~rhHrKivVIDg~vAFvGGiNL~ 496 (952)
.++|+|++|||++.+++||.|++
T Consensus 3 ~~~H~K~~v~D~~~~~iGs~N~~ 25 (28)
T smart00155 3 GVLHTKLMIVDDEIAYIGSANLD 25 (28)
T ss_pred CcEEeEEEEEcCCEEEEeCccCC
Confidence 57999999999999999999996
No 118
>KOG3964 consensus Phosphatidylglycerolphosphate synthase [Lipid transport and metabolism]
Probab=97.50 E-value=0.0071 Score=68.57 Aligned_cols=124 Identities=22% Similarity=0.213 Sum_probs=77.6
Q ss_pred CCCeEEEEecHHHHHHHHHHHHHhcccEEEEeeecCCceeEEEcCCCCchhHHHHHHHHHHhh--CCcEEEEEEccchhh
Q 002219 361 DGSQAQWFVDGKAAFEAIASSIEDAKSEIFICGWWLCPELYLRRPFHNHASSRLDALLEAKAK--QGVQIYILLYKEVAL 438 (952)
Q Consensus 361 ~gn~v~~lvdG~~~f~al~~aI~~Ak~~I~I~~W~lsPe~Yl~rp~~d~~~~rL~~~L~~aA~--rGVkVrILl~d~~~~ 438 (952)
.|..+.+.....++|+.+...|.+||++|+|+ .+||-. ....|.+-|..+-+ .-.+|-||++--.|.
T Consensus 27 ~~d~idiihep~~fy~~lk~~I~~aq~Ri~la------sLYlG~-----~E~elv~cl~~aL~~~~~L~v~iLlD~~rgt 95 (469)
T KOG3964|consen 27 NGDDIDIIHEPPEFYQRLKKLIKKAQRRIFLA------SLYLGK-----LERELVDCLSNALEKNPSLKVSILLDFLRGT 95 (469)
T ss_pred ccccceeecCCHHHHHHHHHHHHHhhheeeee------eeccch-----hHHHHHHHHHHHhccCCCcEEEeehhhhhhc
Confidence 47789999999999999999999999999998 488833 46677777777665 469999997432222
Q ss_pred hhhcchh--hhHHHHhccC-CCeEEEEc--CCC--c-------CCCcccccCcceEEEEeCCeEEEccccCC
Q 002219 439 ALKINSV--YSKRKLLSIH-ENVRVLRY--PDH--F-------ASGVYLWSHHEKLVIVDYQICFIGGLDLC 496 (952)
Q Consensus 439 ~l~~~s~--~~k~~L~~l~-~gI~V~r~--P~~--~-------~~~~~~~rhHrKivVIDg~vAFvGGiNL~ 496 (952)
.-..++. ...-.+.... ..|.+..| |.- + +.+-...-.|-||.-+|+.+ .+-|.|++
T Consensus 96 r~~~~~~s~llp~~l~kkf~e~vd~~lyhtp~Lrg~~k~Lvp~rfneg~GlQhmKIy~fddev-iiSGanls 166 (469)
T KOG3964|consen 96 RELPNSCSALLPVWLGKKFPERVDESLYHTPFLRGLSKSLVPARFNEGLGLQHMKIYGFDDEV-IISGANLS 166 (469)
T ss_pred ccCcccchhhchHHHhhhhhhhhceeeecChhhhhhhhhcCchhhccccchhhhhhhcccHhh-hcccccch
Confidence 1111110 0000011101 23333222 321 0 00112346899999999988 46788996
No 119
>cd00821 PH Pleckstrin homology (PH) domain. Pleckstrin homology (PH) domain. PH domains are only found in eukaryotes. They share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains. PH domains are found in cellular signaling proteins such as serine/threonine kinase, tyrosine kinases, regulators of G-proteins, endocytotic GTPases, adaptors, as well as cytoskeletal associated molecules and in lipid associated enzymes.
Probab=97.45 E-value=0.00071 Score=59.34 Aligned_cols=78 Identities=19% Similarity=0.394 Sum_probs=58.3
Q ss_pred CCcceEEEEEeCCeEEEEeCCCC---CCccEEEEEeCCCCCCCCCCCcccccccccccCCcceeEEEEeCc-eEEEEEec
Q 002219 245 DNWQKVWAVLKPGFLALLADPFD---TKPMDIIVFDVLPASDGNGEGRVSLATEVKERNPLRHAFKVTCGV-RSIRLRTR 320 (952)
Q Consensus 245 ~rw~kRWfvVKdSfL~yv~d~~~---~~~~~v~l~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~-r~l~l~~~ 320 (952)
..|+++|++|.++.|.+++.... ..+..++.++. ..+.... ......+.|.|.+.. +.+.+.|.
T Consensus 14 ~~w~~~~~~L~~~~l~~~~~~~~~~~~~~~~~i~l~~---------~~v~~~~---~~~~~~~~f~i~~~~~~~~~~~~~ 81 (96)
T cd00821 14 KGWKRRWFVLFNDLLLYYKKKSSKKSYKPKGSIPLSG---------AEVEESP---DDSGRKNCFEIRTPDGRSYLLQAE 81 (96)
T ss_pred CCccEEEEEEECCEEEEEECCCCCcCCCCcceEEcCC---------CEEEECC---CcCCCCcEEEEecCCCcEEEEEeC
Confidence 57999999999999999987655 45666666653 1221111 011246889999888 99999999
Q ss_pred chhhHHHHHHHHHh
Q 002219 321 TGAKVRDWVAAIND 334 (952)
Q Consensus 321 s~~~~~~w~~~i~~ 334 (952)
|...+..|..+|+.
T Consensus 82 s~~~~~~W~~~l~~ 95 (96)
T cd00821 82 SEEEREEWIEALQS 95 (96)
T ss_pred CHHHHHHHHHHHhc
Confidence 99999999999975
No 120
>PLN02866 phospholipase D
Probab=97.44 E-value=0.00061 Score=85.41 Aligned_cols=118 Identities=18% Similarity=0.173 Sum_probs=66.2
Q ss_pred HHHHHHHHHHHHhccCeEEEEee-----eeccCCCCChhHHHHHHHHHHHHHHHHHHcCCceEEEEEecCCCCCCCCCCC
Q 002219 763 ESIHCAYCSLIEKAEHFIYIENQ-----FFISGLSGDEIIRNRVLESLYRRILRAYNEKKCFRVIIVIPLLPGFQGGVDD 837 (952)
Q Consensus 763 ~sI~~ayl~~I~~A~~~IYIEnq-----yFis~~~~~~~v~n~I~~AL~~RI~~A~~~g~~vrV~IvlPl~pgf~g~~~d 837 (952)
...+.|++++|++|+++|||+.= +|+-.. .++....+|.++|. +|+++|++|+|+|. - ..++...+
T Consensus 343 ~dyF~AL~eAIe~AKesI~I~~WwlsPEiYL~Rp-~~D~~g~RL~~lL~----rKAkrGVkVrVLLy-D-~vg~al~~-- 413 (1068)
T PLN02866 343 HAAFEAIASAIENAKSEIFITGWWLCPELYLRRP-FHDHESSRLDSLLE----AKAKQGVQIYILLY-K-EVALALKI-- 413 (1068)
T ss_pred HHHHHHHHHHHHhcccEEEEEEccCCceEEEEec-CCCchHHHHHHHHH----HHHHCCCEEEEEEE-C-cccccccc--
Confidence 48999999999999999999421 222211 12345667787776 78889955555432 1 11110001
Q ss_pred CCchhHHHHHHHHHHHHHhhHHHHHHHHHH-hcCCCcccccccccccccccccCCCCcccccceeeeeEEEEeCcEEEEe
Q 002219 838 GGAASVRAIMHWQYRTICRGQNSILHNLYA-LLGPKTHDYISFYGLRAYGRLFEDGPVATSQVYVHSKVMIIDDSIALIG 916 (952)
Q Consensus 838 ~~~~~~r~i~~~qy~ti~rg~~si~~~L~~-~~Gv~~~~Yi~f~~lr~~~~~~~~g~~~te~iyvHSKlmIVDD~~~iIG 916 (952)
+ + ......|.+ ..|+....+-..+ . .+ +-...-|-|++|||++++++|
T Consensus 414 -~--S----------------~~~k~~L~~lh~gI~V~r~P~~~--~-~~---------~ln~RhHRKIVVIDg~IAFvG 462 (1068)
T PLN02866 414 -N--S----------------VYSKRRLLGIHENVKVLRYPDHF--S-SG---------VYLWSHHEKLVIVDYQICFIG 462 (1068)
T ss_pred -C--c----------------hhhHHHHHHhCCCeEEEecCccc--c-cC---------cccccCCCCeEEECCCEEEec
Confidence 0 0 000122332 2354432211000 0 00 012468999999999999999
Q ss_pred cccC
Q 002219 917 SANI 920 (952)
Q Consensus 917 SANi 920 (952)
+.||
T Consensus 463 GiNL 466 (1068)
T PLN02866 463 GLDL 466 (1068)
T ss_pred Cccc
Confidence 9999
No 121
>cd07284 PX_SNX7 The phosphoinositide binding Phox Homology domain of Sorting Nexin 7. The PX domain is a phosphoinositide (PI) binding module present in many proteins with diverse functions. Sorting nexins (SNXs) make up the largest group among PX domain containing proteins. They are involved in regulating membrane traffic and protein sorting in the endosomal system. The PX domain of SNXs binds PIs and targets the protein to PI-enriched membranes. SNXs differ from each other in PI-binding specificity and affinity, and the presence of other protein-protein interaction domains, which help determine subcellular localization and specific function in the endocytic pathway. Some SNXs are localized in early endosome structures such as clathrin-coated pits, while others are located in late structures of the endocytic pathway. SNX7 harbors a Bin/Amphiphysin/Rvs (BAR) domain, which detects membrane curvature, C-terminal to the PX domain, similar to the sorting nexins SNX1-2, SNX4-6, SNX8, SNX30,
Probab=97.29 E-value=0.0011 Score=64.25 Aligned_cols=89 Identities=15% Similarity=0.348 Sum_probs=59.3
Q ss_pred ceeEEEEEEEec-----ceEEEEEEehhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCccccccCcccccccc
Q 002219 62 MLLSYTIEVQYK-----QFKWKLVKKASQVFYLHFALKRRAFFEEIQEKQEQVKEWLQNLGMGDHMAVVQEDDEGDEIAV 136 (952)
Q Consensus 62 ~~~~Y~Iel~~g-----~~~W~v~r~~~~f~~Lh~~lk~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 136 (952)
.++.|+|..+-. .-.|+|.|+|+||..||..|.. ++ ...-+
T Consensus 17 ~y~~Y~V~t~t~~~~~~~~~~~V~RRysDF~~L~~~L~~------------~~----p~~~i------------------ 62 (116)
T cd07284 17 TFITYRVMTKTSRSEFDSSEFEVRRRYQDFLWLKGRLEE------------AH----PTLII------------------ 62 (116)
T ss_pred CeEEEEEEEeeCCCCcCCCceEEeCCchHHHHHHHHHHH------------HC----CCcee------------------
Confidence 589999988753 2378999999999999987763 01 01101
Q ss_pred ccccccccCCCCCCCCCCC---CCCcccc-CCCcchHHHHHHHHHHHHHHhccccccchhhhheee
Q 002219 137 NHDESSKKRDVPANAALPV---IRPALGR-QHSMSDRAKVAMQQYLNHFLGNMDIVNSREVCKFLE 198 (952)
Q Consensus 137 ~~~~~~~~~~~p~~~~lp~---~~~~~~~-~~~~~~r~~~~LE~YL~~lL~~~~~~n~~~l~~Fle 198 (952)
|. ||. ++...++ ....-..+++.||.||+.++..+.++++..+..||+
T Consensus 63 -----------Pp---lP~K~~~~~~~~~~~~~fie~Rr~~Le~FL~ri~~hp~L~~s~~~~~FL~ 114 (116)
T cd07284 63 -----------PP---LPEKFVMKGMVERFNEDFIETRRKALHKFLNRIADHPTLTFNEDFKIFLT 114 (116)
T ss_pred -----------CC---CCCcchhhhccccCCHHHHHHHHHHHHHHHHHHHcCcccccChHHHHhhc
Confidence 11 221 0000011 123334456799999999999999999999999986
No 122
>cd01237 Unc112 Unc-112 pleckstrin homology (PH) domain. Unc-112 pleckstrin homology (PH) domain. Unc-112 and related proteins contain two FERM domains with a PH domain between them. Both the PH and FERM domains have a PH-like fold. The FERM domains are likely responsible for the role of Unc-112 in organizing beta-integrin. The specific role of the Unc-112 PH domain is not known, but it is predicted to be involved in mediating membrane interactions. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains.
Probab=97.17 E-value=0.002 Score=61.32 Aligned_cols=82 Identities=13% Similarity=0.217 Sum_probs=56.8
Q ss_pred CCcceEEEEEeCCeEEEEeCCCCCCccEEEEEeCCCCCCCCCCCcccccccccccCCcceeEEEEeCc----eEEEEEec
Q 002219 245 DNWQKVWAVLKPGFLALLADPFDTKPMDIIVFDVLPASDGNGEGRVSLATEVKERNPLRHAFKVTCGV----RSIRLRTR 320 (952)
Q Consensus 245 ~rw~kRWfvVKdSfL~yv~d~~~~~~~~v~l~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~----r~l~l~~~ 320 (952)
..|++|||++||++|.|+++.+.....-++-+... +..+.-... -...+++|++...+ |...|+|.
T Consensus 18 K~~KrrwF~lk~~~L~YyK~kee~~~~p~i~lnl~-------gcev~~dv~---~~~~kf~I~l~~ps~~~~r~y~l~cd 87 (106)
T cd01237 18 KGYKQYWFTFRDTSISYYKSKEDSNGAPIGQLNLK-------GCEVTPDVN---VAQQKFHIKLLIPTAEGMNEVWLRCD 87 (106)
T ss_pred hhheeEEEEEeCCEEEEEccchhcCCCCeEEEecC-------ceEEccccc---ccccceEEEEecCCccCCeEEEEECC
Confidence 46999999999999999987765444444433321 111110000 01235888888776 99999999
Q ss_pred chhhHHHHHHHHHhcc
Q 002219 321 TGAKVRDWVAAINDAG 336 (952)
Q Consensus 321 s~~~~~~w~~~i~~~~ 336 (952)
|+.+..+|++++.-++
T Consensus 88 sEeqya~Wmaa~rlas 103 (106)
T cd01237 88 NEKQYAKWMAACRLAS 103 (106)
T ss_pred CHHHHHHHHHHHHHhh
Confidence 9999999999998765
No 123
>PF13090 PP_kinase_C: Polyphosphate kinase C-terminal domain; PDB: 2O8R_A 1XDP_A 1XDO_B.
Probab=97.17 E-value=0.085 Score=59.81 Aligned_cols=102 Identities=24% Similarity=0.290 Sum_probs=62.2
Q ss_pred hhHHHHHHHHHHhhCCcEEEEEEccchhhhhh--cchhhhHHHHhccCCCeEEEEcCCCcCCCcccccCcceEEEEe---
Q 002219 410 ASSRLDALLEAKAKQGVQIYILLYKEVALALK--INSVYSKRKLLSIHENVRVLRYPDHFASGVYLWSHHEKLVIVD--- 484 (952)
Q Consensus 410 ~~~rL~~~L~~aA~rGVkVrILl~d~~~~~l~--~~s~~~k~~L~~l~~gI~V~r~P~~~~~~~~~~rhHrKivVID--- 484 (952)
...++.++|.+||+.|-+|.+++ +.-..+. -|-.|+ ++|.. +||+|..- ...+.-|.|+++|=
T Consensus 48 ~~S~iv~aLi~AA~nGK~Vtv~v--ELkARFDEe~Ni~Wa-~~Le~--aGv~ViyG-------~~glKvHaK~~lI~R~e 115 (352)
T PF13090_consen 48 SNSPIVNALIEAAENGKQVTVLV--ELKARFDEENNIHWA-KRLEE--AGVHVIYG-------VPGLKVHAKICLIVRRE 115 (352)
T ss_dssp TT-HHHHHHHHHHHTT-EEEEEE--STTSSSTTCCCCCCC-HHHHH--CT-EEEE---------TT-EE--EEEEEEEEE
T ss_pred CCCHHHHHHHHHHHcCCEEEEEE--EEeccccHHHHhHHH-hhHHh--cCeEEEcC-------CCChhheeeEEEEEEEe
Confidence 46889999999999999999997 2221111 133455 45554 89998731 12356899999994
Q ss_pred ----CCeEEEccccCCCCCcCCCCCCCCCCCCCcCCCCCCCCCCCCCCCCccccccccccCCCCCCCCeEEEEEEEEChH
Q 002219 485 ----YQICFIGGLDLCFGRYDTFEHKIGDNPPLIWPGKDYYNPRESEPNSWEDTMRDELDRGKYPRMPWHDIHCALWGPP 560 (952)
Q Consensus 485 ----g~vAFvGGiNL~~gRwDt~~H~l~D~~~~~~~G~dY~n~~~~d~~~~~~~~~d~~dr~~~pr~pWhDv~~~v~Gpa 560 (952)
..++++|.=|. |+ .+.+ -+-|+++...-|.
T Consensus 116 ~~~~~~Y~hlgTGNy--------------------------Ne-------------------~TAr-~YtD~~l~Ta~~~ 149 (352)
T PF13090_consen 116 GGGLRRYAHLGTGNY--------------------------NE-------------------KTAR-IYTDLSLFTADPE 149 (352)
T ss_dssp TTEEEEEEEEESS-S--------------------------ST-------------------THCC-CEEEEEEEE--HH
T ss_pred CCcEEEEEEEcCCCc--------------------------Cc-------------------cchh-heecceeecCCHH
Confidence 25788887775 11 1222 4679999998875
Q ss_pred -HHHHHHHHH
Q 002219 561 -CRDVARHFV 569 (952)
Q Consensus 561 -a~dl~~~F~ 569 (952)
+.|+...|.
T Consensus 150 i~~D~~~~F~ 159 (352)
T PF13090_consen 150 IGADVAKLFN 159 (352)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 888998884
No 124
>PF07894 DUF1669: Protein of unknown function (DUF1669); InterPro: IPR012461 This family is composed of sequences derived from hypothetical eukaryotic proteins of unknown function. Some members of this family are annotated as being potential phospholipases but no literature was found to support this.
Probab=97.10 E-value=0.0043 Score=68.47 Aligned_cols=150 Identities=22% Similarity=0.284 Sum_probs=94.2
Q ss_pred CeEEEEecH-----HHHHHHHHHHHHhcccEEEEeeecCCceeEEEcCCCCchhHHHHHHHHHHhhCCcEEEEEEccchh
Q 002219 363 SQAQWFVDG-----KAAFEAIASSIEDAKSEIFICGWWLCPELYLRRPFHNHASSRLDALLEAKAKQGVQIYILLYKEVA 437 (952)
Q Consensus 363 n~v~~lvdG-----~~~f~al~~aI~~Ak~~I~I~~W~lsPe~Yl~rp~~d~~~~rL~~~L~~aA~rGVkVrILl~d~~~ 437 (952)
+++++|... ...=+.+-+.|.+|++-|-|. +-+|.+ ..-|.++|.++-+|||-||||| |..+
T Consensus 119 Tr~~vy~qPp~~~~p~IKE~vR~~I~~A~kVIAIV-------MD~FTD-----~dIf~DLleAa~kR~VpVYiLL-D~~~ 185 (284)
T PF07894_consen 119 TRATVYFQPPKDGQPHIKEVVRRMIQQAQKVIAIV-------MDVFTD-----VDIFCDLLEAANKRGVPVYILL-DEQN 185 (284)
T ss_pred ceEEEEeCCCCCCCCCHHHHHHHHHHHhcceeEEE-------eecccc-----HHHHHHHHHHHHhcCCcEEEEe-chhc
Confidence 456666543 235566778899999999994 666662 4556666665559999999998 4443
Q ss_pred hhhhcchhhhHHHHhc-cCCCeEEEEcCCC-c--CCC-cccccCcceEEEEeCCeEEEccccCCCCCcCCCCCCCCCCCC
Q 002219 438 LALKINSVYSKRKLLS-IHENVRVLRYPDH-F--ASG-VYLWSHHEKLVIVDYQICFIGGLDLCFGRYDTFEHKIGDNPP 512 (952)
Q Consensus 438 ~~l~~~s~~~k~~L~~-l~~gI~V~r~P~~-~--~~~-~~~~rhHrKivVIDg~vAFvGGiNL~~gRwDt~~H~l~D~~~ 512 (952)
....+ ..-.+-.+.. ..+|++|+.-... + .+| .+-...++|.++||+..+..|+.-++|--+
T Consensus 186 ~~~Fl-~Mc~~~~v~~~~~~nmrVRsv~G~~y~~rsg~k~~G~~~eKF~lvD~~~V~~GSYSFtWs~~------------ 252 (284)
T PF07894_consen 186 LPHFL-EMCEKLGVNLQHLKNMRVRSVTGCTYYSRSGKKFKGQLKEKFMLVDGDKVISGSYSFTWSSS------------ 252 (284)
T ss_pred ChHHH-HHHHHCCCChhhcCCeEEEEecCCeeecCCCCeeeCcccceeEEEecccccccccceeeccc------------
Confidence 21100 0000000100 1267887643221 1 233 456789999999999999999977652100
Q ss_pred CcCCCCCCCCCCCCCCCCccccccccccCCCCCCCCeEEEEEEEEChHHHHHHHHHHHHH
Q 002219 513 LIWPGKDYYNPRESEPNSWEDTMRDELDRGKYPRMPWHDIHCALWGPPCRDVARHFVQRW 572 (952)
Q Consensus 513 ~~~~G~dY~n~~~~d~~~~~~~~~d~~dr~~~pr~pWhDv~~~v~Gpaa~dl~~~F~qrW 572 (952)
+.. +-+...+.|++|....+-|..-.
T Consensus 253 ------------------------------~~~----r~~~~~~tGq~Ve~FD~EFR~Ly 278 (284)
T PF07894_consen 253 ------------------------------RVH----RNLVTVLTGQIVESFDEEFRELY 278 (284)
T ss_pred ------------------------------ccc----cceeEEEeccccchHhHHHHHHH
Confidence 011 23578899999999988886543
No 125
>cd01263 PH_anillin Anillin Pleckstrin homology (PH) domain. Anillin Pleckstrin homology (PH) domain. Anillin is an actin binding protein involved in cytokinesis. It has a C-terminal PH domain, which has been shown to be necessary, but not sufficient for targetting of anillin to ectopic septin containing foci . PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains. PH domains are found in cellular signaling proteins such as serine/threonine kinase, tyrosine kinsases, regulators of G-proteins, endocytotic GTPAses, adaptors, a well as cytoskeletal associated molecules and in lipid associated enzymes.
Probab=97.09 E-value=0.0034 Score=61.40 Aligned_cols=82 Identities=20% Similarity=0.389 Sum_probs=51.6
Q ss_pred CCcceEEEEEeCCeEEEEeCCCC---CCccEEEEEeCCCCCCCCCCCcccccccccccCCcceeEEEEeC----------
Q 002219 245 DNWQKVWAVLKPGFLALLADPFD---TKPMDIIVFDVLPASDGNGEGRVSLATEVKERNPLRHAFKVTCG---------- 311 (952)
Q Consensus 245 ~rw~kRWfvVKdSfL~yv~d~~~---~~~~~v~l~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~---------- 311 (952)
..|++|||||++++|.|.++|.+ ..|+.+|-+..-..+. +..+. .+.-+..++|.|...
T Consensus 17 k~W~RRWFvL~g~~L~y~k~p~d~~~~~Plg~I~L~~c~~~~------v~~~~--r~~c~Rp~tF~i~~~~~~~~~~~~~ 88 (122)
T cd01263 17 GAWHRRWCALEGGEIKYWKYPDDEKRKGPTGLIDLSTCTSSE------GASAV--RDICARPNTFHLDVWRPKMETDDET 88 (122)
T ss_pred CCceEEEEEEeCCEEEEEcCCCccccCCceEEEEhhhCcccc------cccCC--hhhcCCCCeEEEEEecccccccccc
Confidence 57999999999999999998887 3466776665421111 10000 011223456666432
Q ss_pred ---------ceE-EEEEecchhhHHHHHHHHHh
Q 002219 312 ---------VRS-IRLRTRTGAKVRDWVAAIND 334 (952)
Q Consensus 312 ---------~r~-l~l~~~s~~~~~~w~~~i~~ 334 (952)
.|+ .-|-+.+..+..+|..+|++
T Consensus 89 ~~~~~~~~~~r~~~~lsaDt~eer~~W~~ain~ 121 (122)
T cd01263 89 LVSQCRRGIERLRVMLSADTKEERQTWLSLLNS 121 (122)
T ss_pred eeeccCCceeEEEEEEecCCHHHHHHHHHHHhc
Confidence 121 34557888999999999986
No 126
>cd00900 PH-like Pleckstrin homology-like domain. Pleckstrin homology-like domain. This family includes the PH domain, both the Shc-like and IRS-like PTB domains, the ran-binding domain, the EVH1 domain, a domain in neurobeachin and the third domain of FERM. All of these domains have a PH fold, but lack significant sequence similarity. They are generally involved in targeting to protein to the appropriate cellular location or interacting with a binding partner. The PH domain is commonly found in eukaryotic signaling proteins. This domain family possesses multiple functions including the ability to bind inositol phosphates and to other proteins.
Probab=97.08 E-value=0.006 Score=53.84 Aligned_cols=78 Identities=15% Similarity=0.300 Sum_probs=56.3
Q ss_pred CCcceEEEEEeCCeEEEEeCCCCCCcc-EEEEEeCCCCCCCCCCCcccccccccccCCcceeEEEEeC---ceEEEEEec
Q 002219 245 DNWQKVWAVLKPGFLALLADPFDTKPM-DIIVFDVLPASDGNGEGRVSLATEVKERNPLRHAFKVTCG---VRSIRLRTR 320 (952)
Q Consensus 245 ~rw~kRWfvVKdSfL~yv~d~~~~~~~-~v~l~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~---~r~l~l~~~ 320 (952)
..|+++|++|.++.|.|+++.....+. .++.+... .+.... ...+..+.|.|.+. .+.+.|.|.
T Consensus 17 ~~w~~~~~~l~~~~l~~~~~~~~~~~~~~~~~l~~~---------~v~~~~---~~~~~~~~F~i~~~~~~~~~~~~~~~ 84 (99)
T cd00900 17 KRWKRRWFFLFDDGLLLYKSDDKKEIKPGSIPLSEI---------SVEEDP---DGSDDPNCFAIVTKDRGRRVFVFQAD 84 (99)
T ss_pred cCceeeEEEEECCEEEEEEcCCCCcCCCCEEEccce---------EEEECC---CCCCCCceEEEECCCCCcEEEEEEcC
Confidence 689999999999999999865544443 24444321 121111 11134688999988 799999999
Q ss_pred chhhHHHHHHHHHh
Q 002219 321 TGAKVRDWVAAIND 334 (952)
Q Consensus 321 s~~~~~~w~~~i~~ 334 (952)
+...+..|..+|..
T Consensus 85 ~~~~~~~W~~al~~ 98 (99)
T cd00900 85 SEEEAQEWVEALQQ 98 (99)
T ss_pred CHHHHHHHHHHHhc
Confidence 99999999999875
No 127
>cd01245 PH_RasGAP_CG5898 RAS GTPase-activating protein (GAP) CG5898 Pleckstrin homology (PH) domain. RAS GTPase-activating protein (GAP) CG5898 Pleckstrin homology (PH) domain. This protein has a domain architecture of SH2-SH3-SH2-PH-C2-Ras_GAP. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains. PH domains are found in cellular signaling proteins such as serine/threonine kinase, tyrosine kinsases, regulators of G-proteins, endocytotic GTPAses, adaptors, a well as cytoskeletal associated molecules and in lipid associated enzymes.
Probab=96.98 E-value=0.0039 Score=58.78 Aligned_cols=78 Identities=18% Similarity=0.361 Sum_probs=53.3
Q ss_pred CCcceEEEEEeC----CeEEEEeCCCCCCccEEEEEeCCCCCCCCCCCccccccccccc-CCcceeEEEEeCce-EEEEE
Q 002219 245 DNWQKVWAVLKP----GFLALLADPFDTKPMDIIVFDVLPASDGNGEGRVSLATEVKER-NPLRHAFKVTCGVR-SIRLR 318 (952)
Q Consensus 245 ~rw~kRWfvVKd----SfL~yv~d~~~~~~~~v~l~D~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~i~~~~r-~l~l~ 318 (952)
..|++|||++.. +.|.|++++-+..+.+++.... +.+. ++.++ -+..+-|.|.+.++ +.-..
T Consensus 14 K~wK~rwF~l~~~~s~~~l~yf~~~~~~~p~gli~l~~-----------~~V~-~v~ds~~~r~~cFel~~~~~~~~y~~ 81 (98)
T cd01245 14 KLWKTLYFALILDGSRSHESLLSSPKKTKPIGLIDLSD-----------AYLY-PVHDSLFGRPNCFQIVERALPTVYYS 81 (98)
T ss_pred cccceeEEEEecCCCCceEEEEcCCCCCCccceeeccc-----------cEEE-EccccccCCCeEEEEecCCCCeEEEE
Confidence 579999999986 9999999888888888544331 1111 11111 12348899998887 44444
Q ss_pred ecchhhHHHHHHHHHh
Q 002219 319 TRTGAKVRDWVAAIND 334 (952)
Q Consensus 319 ~~s~~~~~~w~~~i~~ 334 (952)
|.+..+..+|+.+|..
T Consensus 82 ~a~~~er~~Wi~~l~~ 97 (98)
T cd01245 82 CRSSEERDKWIESLQA 97 (98)
T ss_pred eCCHHHHHHHHHHHhc
Confidence 5545999999999875
No 128
>cd01230 PH_EFA6 EFA6 Pleckstrin Homology (PH) domain. EFA6 Pleckstrin Homology (PH) domain. EFA6 is an guanine nucleotide exchange factor for ARF6, which is involved in membrane recycling. It consists of a SEC7 domain followed by a PH domain. The EFA6 PH domain regulates its association with the plasma membrane. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains.
Probab=96.97 E-value=0.0074 Score=58.67 Aligned_cols=103 Identities=17% Similarity=0.243 Sum_probs=66.5
Q ss_pred cceeEEEeeecCCccCCCCCCcccccCCCccccCCcceEEEEEeCCeEEEEeCCCCCC-------ccEEEEEeCCCCCCC
Q 002219 212 LKEDYVMAKHLPKISRNDDSRKCCCCPLFTCCNDNWQKVWAVLKPGFLALLADPFDTK-------PMDIIVFDVLPASDG 284 (952)
Q Consensus 212 gKEG~l~kr~~~~~~G~~~~~~~~~~~~~~~~~~rw~kRWfvVKdSfL~yv~d~~~~~-------~~~v~l~D~~~~~~~ 284 (952)
.|||+|.-++..-..| ++.+. -.+.|.++|.||+++-|.+.+|-.... +...|-++.
T Consensus 1 ~~~g~l~RK~~~~~~~-----kk~~~-----~~R~Wk~~y~vL~g~~L~~yKDe~~~~~~~~~~~~~~~Isi~~------ 64 (117)
T cd01230 1 YKHGALMRKVHADPDC-----RKTPF-----GKRSWKMFYGILRGLVLYLQKDEHKPGKSLSETELKNAISIHH------ 64 (117)
T ss_pred CCCcEEEEEEEecCCC-----ccCCC-----CCCcceEEEEEEECCEEEEEccCcccccccccccccceEEecc------
Confidence 4899998776432211 12111 126799999999999999998754211 111111111
Q ss_pred CCCCcccccccccccCCcceeEEEEeC-ceEEEEEecchhhHHHHHHHHHhcc
Q 002219 285 NGEGRVSLATEVKERNPLRHAFKVTCG-VRSIRLRTRTGAKVRDWVAAINDAG 336 (952)
Q Consensus 285 ~~~~~~~~~~~~~~~~~~~~~~~i~~~-~r~l~l~~~s~~~~~~w~~~i~~~~ 336 (952)
....++ .+.+..++.|+|... ++.+.|.|.+...+..|..+|+.++
T Consensus 65 ---a~~~ia---~dy~Kr~~VF~L~~~~g~~~lfqA~~~ee~~~Wi~~I~~~~ 111 (117)
T cd01230 65 ---ALATRA---SDYSKKPHVFRLRTADWREFLFQTSSLKELQSWIERINVVA 111 (117)
T ss_pred ---ceeEee---ccccCCCcEEEEEcCCCCEEEEECCCHHHHHHHHHHHHHHH
Confidence 000111 123445788999986 4899999999999999999999876
No 129
>cd01253 PH_beta_spectrin Beta-spectrin pleckstrin homology (PH) domain. Beta-spectrin pleckstrin homology (PH) domain. Beta spectrin binds actin and functions as a major component of the cytoskeleton underlying cellular membranes. Beta spectrin consists of multiple spectrin repeats followed by a PH domain, which binds to Inositol-1,4,5-Trisphosphate. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. PH domains are often involved in targeting proteins to the plasma membrane via lipid binding. PH domains are found in cellular signaling proteins such as serine/threonine kinase, tyrosine kinsases, regulators of G-proteins, endocytotic GTPases, adaptors, as well as cytoskeletal associated molecules and in lipid associated enzymes.
Probab=96.93 E-value=0.0063 Score=57.08 Aligned_cols=80 Identities=16% Similarity=0.309 Sum_probs=51.6
Q ss_pred CCcceEEEEEeCCeEEEEeCCCCC--CccEEEEEeCCCCCCCCCCCcccccccccccCCcceeEEEE-eCceEEEEEecc
Q 002219 245 DNWQKVWAVLKPGFLALLADPFDT--KPMDIIVFDVLPASDGNGEGRVSLATEVKERNPLRHAFKVT-CGVRSIRLRTRT 321 (952)
Q Consensus 245 ~rw~kRWfvVKdSfL~yv~d~~~~--~~~~v~l~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~-~~~r~l~l~~~s 321 (952)
..|++||++++++-|.|+++.... ....++.+|. . ...+.+.. +....++.|+|. .+++.+.|.+.+
T Consensus 21 ~~Wk~r~~vL~~~~L~~ykd~~~~~~~~~~~~~i~l------~-~~~i~~~~---~~~k~~~~F~l~~~~~~~~~f~a~s 90 (104)
T cd01253 21 RSWDNVYGVLCGQSLSFYKDEKMAAENVHGEPPVDL------T-GAQCEVAS---DYTKKKHVFRLRLPDGAEFLFQAPD 90 (104)
T ss_pred CCcceEEEEEeCCEEEEEecCcccccCCCCCCcEec------c-CCEEEecC---CcccCceEEEEEecCCCEEEEECCC
Confidence 579999999999999999876432 2211112221 0 11122111 112235778885 445899999999
Q ss_pred hhhHHHHHHHHHh
Q 002219 322 GAKVRDWVAAIND 334 (952)
Q Consensus 322 ~~~~~~w~~~i~~ 334 (952)
...+..|+.+|+.
T Consensus 91 ~e~~~~Wi~aL~~ 103 (104)
T cd01253 91 EEEMSSWVRALKS 103 (104)
T ss_pred HHHHHHHHHHHhc
Confidence 9999999999974
No 130
>cd01219 PH_FGD FGD (faciogenital dysplasia protein) pleckstrin homology (PH) domain. FGD (faciogenital dysplasia protein) pleckstrin homology (PH) domain. FGD has a RhoGEF (DH) domain, followed by a PH domain, a FYVE domain and a C-terminal PH domain. FGD is a guanine nucleotide exchange factor that activates the Rho GTPase Cdc42. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains. PH domains are found in cellular signaling proteins such as serine/threonine kinase, tyrosine kinases, regulators of G-proteins, endocytotic GTPases, adaptors, as well as cytoskeletal associated molecules and in lipid associated enzymes.
Probab=96.86 E-value=0.0092 Score=56.20 Aligned_cols=93 Identities=20% Similarity=0.250 Sum_probs=62.0
Q ss_pred ceeEEEeeecCCccCCCCCCcccccCCCccccCCcceEEEEEeCCeEEEEeCCC--CCCccEEE-EEeCCCCCCCCCCCc
Q 002219 213 KEDYVMAKHLPKISRNDDSRKCCCCPLFTCCNDNWQKVWAVLKPGFLALLADPF--DTKPMDII-VFDVLPASDGNGEGR 289 (952)
Q Consensus 213 KEG~l~kr~~~~~~G~~~~~~~~~~~~~~~~~~rw~kRWfvVKdSfL~yv~d~~--~~~~~~v~-l~D~~~~~~~~~~~~ 289 (952)
|||.|+|.+.. ...|++|||+|-+.-|+|.+... ++.-..|. -||. . .
T Consensus 4 keG~L~K~~~~--------------------~~~~k~RyffLFnd~Ll~~~~~~~~~~~~y~~~~~i~l----~-----~ 54 (101)
T cd01219 4 KEGSVLKISST--------------------TEKTEERYLFLFNDLLLYCVPRKMIGGSKFKVRARIDV----S-----G 54 (101)
T ss_pred cceEEEEEecC--------------------CCCceeEEEEEeCCEEEEEEcccccCCCcEEEEEEEec----c-----c
Confidence 89999887310 14699999999988999987311 12111111 0221 0 1
Q ss_pred ccccccccccCCcceeEEEEeCceEEEEEecchhhHHHHHHHHHhcc
Q 002219 290 VSLATEVKERNPLRHAFKVTCGVRSIRLRTRTGAKVRDWVAAINDAG 336 (952)
Q Consensus 290 ~~~~~~~~~~~~~~~~~~i~~~~r~l~l~~~s~~~~~~w~~~i~~~~ 336 (952)
+.+... ...+..|+|.|...+|++.+.|.|...-.+|+.+|+.+.
T Consensus 55 ~~v~~~--~~~~~~~~F~I~~~~rsf~l~A~s~eEk~~W~~ai~~~i 99 (101)
T cd01219 55 MQVCEG--DNLERPHSFLVSGKQRCLELQARTQKEKNDWVQAIFSII 99 (101)
T ss_pred EEEEeC--CCCCcCceEEEecCCcEEEEEcCCHHHHHHHHHHHHHHh
Confidence 122111 122357999999999999999999999999999999864
No 131
>COG0855 Ppk Polyphosphate kinase [Inorganic ion transport and metabolism]
Probab=96.83 E-value=0.12 Score=62.43 Aligned_cols=104 Identities=22% Similarity=0.312 Sum_probs=67.7
Q ss_pred cHHHHHHHHHHHHHhccc---EEEEeeecCCceeEEEcCCCCchhHHHHHHHHHHhhCCcEEEEEEccchhhhhh--cch
Q 002219 370 DGKAAFEAIASSIEDAKS---EIFICGWWLCPELYLRRPFHNHASSRLDALLEAKAKQGVQIYILLYKEVALALK--INS 444 (952)
Q Consensus 370 dG~~~f~al~~aI~~Ak~---~I~I~~W~lsPe~Yl~rp~~d~~~~rL~~~L~~aA~rGVkVrILl~d~~~~~l~--~~s 444 (952)
-.-+.|+.+++-|++|-. .+-| -+-|+| -+...+|.++|..||+.|-+|.+|| +.-..+. -|-
T Consensus 349 HPYeSF~~Vv~fl~qAA~DP~VLAI-------KqTLYR---t~~dSpIV~ALi~AA~nGKqVtvlV--ELkARFDEE~NI 416 (696)
T COG0855 349 HPYESFEPVVEFLRQAAADPDVLAI-------KQTLYR---TSKDSPIVRALIDAAENGKQVTVLV--ELKARFDEEANI 416 (696)
T ss_pred CchhhhHHHHHHHHHhhcCCCeEEE-------EEEEEe---cCCCCHHHHHHHHHHHcCCeEEEEE--EEhhhcChhhhh
Confidence 345678889999999854 3444 334455 3456889999999999999999997 2211111 123
Q ss_pred hhhHHHHhccCCCeEEEEcCCCcCCCcccccCcceEEEE----eCC---eEEEccccC
Q 002219 445 VYSKRKLLSIHENVRVLRYPDHFASGVYLWSHHEKLVIV----DYQ---ICFIGGLDL 495 (952)
Q Consensus 445 ~~~k~~L~~l~~gI~V~r~P~~~~~~~~~~rhHrKivVI----Dg~---vAFvGGiNL 495 (952)
.|+ +.|.. +||+|.. |...+..|.|+++| |++ .+-+|.=|.
T Consensus 417 ~WA-k~LE~--AGvhVvy-------G~~glKtHAKm~lVvRrE~~~lrrY~HlGTGNY 464 (696)
T COG0855 417 HWA-KRLER--AGVHVVY-------GVVGLKTHAKMLLVVRREGGKLRRYVHLGTGNY 464 (696)
T ss_pred HHH-HHHHh--CCcEEEe-------cccceeeeeeEEEEEEecCCcEEEEEEecCCCC
Confidence 344 45543 8999863 23346789999988 332 455565554
No 132
>cd06896 PX_PI3K_C2_gamma The phosphoinositide binding Phox Homology Domain of the Gamma Isoform of Class II Phosphoinositide 3-Kinases. The PX domain is a phosphoinositide (PI) binding module present in many proteins with diverse functions. The Phosphoinositide 3-Kinase (PI3K) family of enzymes catalyzes the phosphorylation of the 3-hydroxyl group of the inositol ring of phosphatidylinositol. PI3Ks play an important role in a variety of fundamental cellular processes, including cell motility, the Ras pathway, vesicle trafficking and secretion, immune cell activation and apoptosis. PI3Ks are divided into three main classes (I, II, and III) based on their substrate specificity, regulation, and domain structure. Class II PI3Ks preferentially use PI as a substrate to produce PI3P, but can also phosphorylate PI4P to produce PI(3,4)P2. They function as monomers and do not associate with any regulatory subunits. Class II enzymes contain an N-terminal Ras binding domain, a lipid binding C2 dom
Probab=96.81 E-value=0.0068 Score=56.77 Aligned_cols=85 Identities=20% Similarity=0.221 Sum_probs=57.0
Q ss_pred eEEEEEEEec-ceEEEEEEehhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCccccccCcccccccccccccc
Q 002219 64 LSYTIEVQYK-QFKWKLVKKASQVFYLHFALKRRAFFEEIQEKQEQVKEWLQNLGMGDHMAVVQEDDEGDEIAVNHDESS 142 (952)
Q Consensus 64 ~~Y~Iel~~g-~~~W~v~r~~~~f~~Lh~~lk~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 142 (952)
.+|.|+|... +-.=.|+|+|.+|..||.+|++ .+|.
T Consensus 13 ~lY~i~V~~sd~~~t~v~Rs~eeF~eLH~~L~~-------------------~FP~------------------------ 49 (101)
T cd06896 13 NLYLVQVTQSCNLVSLTEKSFEQFSELHSQLQK-------------------QFPS------------------------ 49 (101)
T ss_pred eEEEEEEEEeCCCcceeeecHHHHHHHHHHHHH-------------------HCcc------------------------
Confidence 4799988765 4556799999999999999985 2220
Q ss_pred ccCCCCCCCCCCCCCCccccCCCcchHHHHHHHHHHHHHHhccc-cccchhhhheee
Q 002219 143 KKRDVPANAALPVIRPALGRQHSMSDRAKVAMQQYLNHFLGNMD-IVNSREVCKFLE 198 (952)
Q Consensus 143 ~~~~~p~~~~lp~~~~~~~~~~~~~~r~~~~LE~YL~~lL~~~~-~~n~~~l~~Fle 198 (952)
+.+|+ +|.. =.+++. ..+.+|.+.|+.||+.||..+. +.++.-++.||+
T Consensus 50 --~~LP~---fP~~-~~~~~~-~~~~~R~~~L~~Yl~~Ll~~~~eVa~sd~v~sFF~ 99 (101)
T cd06896 50 --LALPE---FPHW-WHLPFT-DSDHKRVRDLNHYLEQLLSGSREVANSDCVLSFFL 99 (101)
T ss_pred --ccccC---CCCc-cccCcc-cHHHHHHHHHHHHHHHHHccCHHHhcchHHHHHhh
Confidence 12222 2211 011221 2244566799999999997544 679999999985
No 133
>PF13918 PLDc_3: PLD-like domain
Probab=96.71 E-value=0.0034 Score=64.94 Aligned_cols=57 Identities=28% Similarity=0.359 Sum_probs=46.1
Q ss_pred HHHHHHHHHHhcccEEEEeeecCCceeEEEcCCCCchhHHHHHHHHHHh-hCCcEEEEEE
Q 002219 374 AFEAIASSIEDAKSEIFICGWWLCPELYLRRPFHNHASSRLDALLEAKA-KQGVQIYILL 432 (952)
Q Consensus 374 ~f~al~~aI~~Ak~~I~I~~W~lsPe~Yl~rp~~d~~~~rL~~~L~~aA-~rGVkVrILl 432 (952)
=.++|+..|++|++.|+|+--..-|-+..-. .-.....|+++|.+|| .|||+||+|+
T Consensus 83 DldAIl~~I~~A~~fI~IsVMdY~P~~~~~~--~~~YWP~ID~ALR~AA~~R~V~VRlLI 140 (177)
T PF13918_consen 83 DLDAILSVIDSAKKFIYISVMDYLPTSRYSK--PNRYWPVIDDALRRAAIERGVKVRLLI 140 (177)
T ss_pred HHHHHHHHHHhHhheEEEEEeecCCeeecCC--CCCcchhHHHHHHHHHHHcCCeEEEEE
Confidence 4689999999999999998877777543222 2345678999999987 8999999998
No 134
>PF11495 Regulator_TrmB: Archaeal transcriptional regulator TrmB; InterPro: IPR021586 TrmB is an alpha-glucoside sensing transcriptional regulator. The protein is the transcriptional repressor for gene cluster encoding trehalose/maltose ABC transporter in T.litoralis and P.furiosus []. TrmB has lost its DNA binding domain but retained its sugar recognition site. A nonreducing glucosyl residue is shared by all substrates bound to TrmB which suggests that its a common recognition motif []. ; PDB: 3QPH_A 2F5T_X.
Probab=96.59 E-value=0.018 Score=62.05 Aligned_cols=96 Identities=24% Similarity=0.298 Sum_probs=62.6
Q ss_pred EecHHHHHHHHHHHHHhcccEEEEeeecCCceeEEEcCCCCchhHHHHHHHHHHhhCCcEEEEEEccchhhhhhcchhhh
Q 002219 368 FVDGKAAFEAIASSIEDAKSEIFICGWWLCPELYLRRPFHNHASSRLDALLEAKAKQGVQIYILLYKEVALALKINSVYS 447 (952)
Q Consensus 368 lvdG~~~f~al~~aI~~Ak~~I~I~~W~lsPe~Yl~rp~~d~~~~rL~~~L~~aA~rGVkVrILl~d~~~~~l~~~s~~~ 447 (952)
+.+-......+.+.|++|+++|+|..| ...-..|.+.|++|++|||+|.++++... . +..
T Consensus 5 vkg~~~I~~~i~elI~~Ae~eI~is~~-------------~~~l~~l~~~L~~a~~rGV~V~li~~~~~-~----~~~-- 64 (233)
T PF11495_consen 5 VKGRETILERIRELIENAESEIYISIP-------------PEFLEELRDELEEAVDRGVKVKLIVFGED-P----DPE-- 64 (233)
T ss_dssp ESSHHHHHHHHHHHHHC-SSEEEEEE--------------GGGHHHHHHHHHHHHHTT-EEEEEESS----------G--
T ss_pred EeCHHHHHHHHHHHHHHhheEEEEEcC-------------HHHHHHHHHHHHHHHHCCCEEEEEEeCCC-C----Cch--
Confidence 344557889999999999999999765 13457899999999999999999997611 0 000
Q ss_pred HHHHhccCCCeEEEEcCCCcCCCcccccCcceEEEEeCCeEEEccccC
Q 002219 448 KRKLLSIHENVRVLRYPDHFASGVYLWSHHEKLVIVDYQICFIGGLDL 495 (952)
Q Consensus 448 k~~L~~l~~gI~V~r~P~~~~~~~~~~rhHrKivVIDg~vAFvGGiNL 495 (952)
....+.+....+.-. ..|--++|+|++.+++++...
T Consensus 65 ---~~~~~~~~~~vr~~~---------~~~~~~~ivD~~~~l~~~~~~ 100 (233)
T PF11495_consen 65 ---EFEYHGNATEVRVRR---------GGRPFMVIVDRKEALFAPSDM 100 (233)
T ss_dssp ---GGTTSSEEEEEE-S------------S-EEEEETTTEEEEETTTT
T ss_pred ---hhhhcccccEEEEec---------CCCcEEEEEECCEEEEEeccc
Confidence 111223444444321 124567999999999998765
No 135
>PF14593 PH_3: PH domain; PDB: 1W1H_D 1W1D_A 1W1G_A 2VKI_A.
Probab=96.38 E-value=0.024 Score=54.01 Aligned_cols=85 Identities=24% Similarity=0.271 Sum_probs=61.8
Q ss_pred CcceeEEEeeecCCccCCCCCCcccccCCCccccCCcceEEEEEeCC-eEEEEeCCCCCCccEEEEEeCCCCCCCCCCCc
Q 002219 211 KLKEDYVMAKHLPKISRNDDSRKCCCCPLFTCCNDNWQKVWAVLKPG-FLALLADPFDTKPMDIIVFDVLPASDGNGEGR 289 (952)
Q Consensus 211 KgKEG~l~kr~~~~~~G~~~~~~~~~~~~~~~~~~rw~kRWfvVKdS-fL~yv~d~~~~~~~~v~l~D~~~~~~~~~~~~ 289 (952)
-.++|+|.|++ | .+ .++|||+++|. =|.|++ |.++.+...|.++.. -.
T Consensus 13 Il~~g~v~K~k-----g-----------l~------~kkR~liLTd~PrL~Yvd-p~~~~~KGeI~~~~~--------l~ 61 (104)
T PF14593_consen 13 ILKQGYVKKRK-----G-----------LF------AKKRQLILTDGPRLFYVD-PKKMVLKGEIPWSKE--------LS 61 (104)
T ss_dssp EEEEEEEEEEE-----T-----------TE------EEEEEEEEETTTEEEEEE-TTTTEEEEEE--STT---------E
T ss_pred EEEEEEEEEee-----c-----------eE------EEEEEEEEccCCEEEEEE-CCCCeECcEEecCCc--------eE
Confidence 46999999985 2 22 57899999999 999995 889888888877741 11
Q ss_pred ccccccccccCCcceeEEEEeCceEEEEEecchhhHHHHHHHHHhc
Q 002219 290 VSLATEVKERNPLRHAFKVTCGVRSIRLRTRTGAKVRDWVAAINDA 335 (952)
Q Consensus 290 ~~~~~~~~~~~~~~~~~~i~~~~r~l~l~~~s~~~~~~w~~~i~~~ 335 (952)
+. .....+|.|....|+..|... ...+.+|.++|++.
T Consensus 62 v~--------~k~~~~F~I~tp~RtY~l~d~-~~~A~~W~~~I~~~ 98 (104)
T PF14593_consen 62 VE--------VKSFKTFFIHTPKRTYYLEDP-EGNAQQWVEAIEEV 98 (104)
T ss_dssp EE--------ECSSSEEEEEETTEEEEEE-T-TS-HHHHHHHHHHH
T ss_pred EE--------EccCCEEEEECCCcEEEEECC-CCCHHHHHHHHHHH
Confidence 11 112347999999999999985 55688999999985
No 136
>KOG0930 consensus Guanine nucleotide exchange factor Cytohesin, contains PH and Sec7 domains [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.35 E-value=0.016 Score=62.91 Aligned_cols=107 Identities=16% Similarity=0.299 Sum_probs=65.2
Q ss_pred CcceeEEEeeecCCccCCCCCCcccccCCCccccCCcceEEEEEeCCeEEEEeCCCCCCccEEEEEeCCCCCC---CCCC
Q 002219 211 KLKEDYVMAKHLPKISRNDDSRKCCCCPLFTCCNDNWQKVWAVLKPGFLALLADPFDTKPMDIIVFDVLPASD---GNGE 287 (952)
Q Consensus 211 KgKEG~l~kr~~~~~~G~~~~~~~~~~~~~~~~~~rw~kRWfvVKdSfL~yv~d~~~~~~~~v~l~D~~~~~~---~~~~ 287 (952)
...||+|.|.+ | + + ...|++||||+.|.||.|++.--+..|+.+|-.....--+ .+.-
T Consensus 260 pdREGWLlKlg-----g-~--------r-----vktWKrRWFiLtdNCLYYFe~tTDKEPrGIIpLeNlsir~VedP~kP 320 (395)
T KOG0930|consen 260 PDREGWLLKLG-----G-N--------R-----VKTWKRRWFILTDNCLYYFEYTTDKEPRGIIPLENLSIREVEDPKKP 320 (395)
T ss_pred ccccceeeeec-----C-C--------c-----ccchhheeEEeecceeeeeeeccCCCCCcceeccccceeeccCCCCC
Confidence 45899998873 1 1 1 1579999999999999999877677788888654421100 0000
Q ss_pred C--ccccc----ccccc-cCCcceeEEEEeCceEEEEEecchhhHHHHHHHHHhccC
Q 002219 288 G--RVSLA----TEVKE-RNPLRHAFKVTCGVRSIRLRTRTGAKVRDWVAAINDAGL 337 (952)
Q Consensus 288 ~--~~~~~----~~~~~-~~~~~~~~~i~~~~r~l~l~~~s~~~~~~w~~~i~~~~~ 337 (952)
+ ++... ..+|. .|+ ..|=.++-..-..++-+.+.....+|..+|..+..
T Consensus 321 ~cfEly~ps~~gq~IKACKTe-~DGRvVEG~H~vYrIsA~~~Ee~~~Wi~sI~a~is 376 (395)
T KOG0930|consen 321 NCFELYIPSNKGQVIKACKTE-ADGRVVEGNHSVYRISAPTPEEKDEWIKSIKAAIS 376 (395)
T ss_pred CeEEEecCCCCcCeeeeeccc-CCceeEeccceEEEeeCCCHHHHHHHHHHHHHHhc
Confidence 1 11000 00111 111 22333443344567888999999999999998764
No 137
>PLN02352 phospholipase D epsilon
Probab=96.24 E-value=0.011 Score=72.90 Aligned_cols=61 Identities=18% Similarity=0.273 Sum_probs=41.0
Q ss_pred HHHHHHHHHHHHhcccEEEEeeecCCceeEEEc-----C-----CCCchhHHHHHHHHHHhh--CCcEEEEEEccchh
Q 002219 372 KAAFEAIASSIEDAKSEIFICGWWLCPELYLRR-----P-----FHNHASSRLDALLEAKAK--QGVQIYILLYKEVA 437 (952)
Q Consensus 372 ~~~f~al~~aI~~Ak~~I~I~~W~lsPe~Yl~r-----p-----~~d~~~~rL~~~L~~aA~--rGVkVrILl~d~~~ 437 (952)
.+...+.++||++||+.|||.. .+|+-. + +....+..|...|.+|.+ ++-+|+|++.-.++
T Consensus 452 rSIq~AYi~AIr~AqhfIYIEN-----QYFiss~~~w~~~~~~~~~N~I~~eIa~kI~~kir~~e~f~V~IViP~~Pe 524 (758)
T PLN02352 452 RSIHEAYVEAIRRAERFIYIEN-----QYFIGGCHLWEKDNHCGCTNLIPIEIALKIASKIRAKERFAVYILIPMWPE 524 (758)
T ss_pred hHHHHHHHHHHHhhhhEEEEeh-----hhhhccccccccccccchhcchHHHHHHHHHHHHhCCCCCEEEEEECCCCC
Confidence 3588999999999999999975 333311 1 011234466777777655 56899999865543
No 138
>PF13090 PP_kinase_C: Polyphosphate kinase C-terminal domain; PDB: 2O8R_A 1XDP_A 1XDO_B.
Probab=96.19 E-value=0.0099 Score=67.09 Aligned_cols=100 Identities=22% Similarity=0.356 Sum_probs=68.8
Q ss_pred HHHHHHHHHHHHHHHcCCceEEEEEecCCCCCCCCCCCCCchhHHHHHHHHHHHHHhhHHHHHHHHHHhcCCCccccccc
Q 002219 800 RVLESLYRRILRAYNEKKCFRVIIVIPLLPGFQGGVDDGGAASVRAIMHWQYRTICRGQNSILHNLYALLGPKTHDYISF 879 (952)
Q Consensus 800 ~I~~AL~~RI~~A~~~g~~vrV~IvlPl~pgf~g~~~d~~~~~~r~i~~~qy~ti~rg~~si~~~L~~~~Gv~~~~Yi~f 879 (952)
.|.+||. +|+++|+.|.|+ +-++.-|+.+- . ++|. ++|.+ +|+.+ .
T Consensus 51 ~iv~aLi----~AA~nGK~Vtv~--vELkARFDEe~------N----i~Wa------------~~Le~-aGv~V-----i 96 (352)
T PF13090_consen 51 PIVNALI----EAAENGKQVTVL--VELKARFDEEN------N----IHWA------------KRLEE-AGVHV-----I 96 (352)
T ss_dssp HHHHHHH----HHHHTT-EEEEE--ESTTSSSTTCC------C----CCCC------------HHHHH-CT-EE-----E
T ss_pred HHHHHHH----HHHHcCCEEEEE--EEEeccccHHH------H----hHHH------------hhHHh-cCeEE-----E
Confidence 7999997 999999776655 77777776332 1 3454 45777 89865 3
Q ss_pred ccccccccccCCCCcccccceeeeeEEEEeC-------cEEEEecccCCcCccCCCCCcceEEEEEchhhHHHhhhc
Q 002219 880 YGLRAYGRLFEDGPVATSQVYVHSKVMIIDD-------SIALIGSANINDRSLLGSRDSEVSVGLYLFILRWELTDL 949 (952)
Q Consensus 880 ~~lr~~~~~~~~g~~~te~iyvHSKlmIVDD-------~~~iIGSANin~RSm~G~rDsEi~v~i~d~~~~~~~~~~ 949 (952)
||+- ..-||||+++|=- +++-+|+-|.|+..- ..=+-++++-.+++++.++.++
T Consensus 97 yG~~--------------glKvHaK~~lI~R~e~~~~~~Y~hlgTGNyNe~TA--r~YtD~~l~Ta~~~i~~D~~~~ 157 (352)
T PF13090_consen 97 YGVP--------------GLKVHAKICLIVRREGGGLRRYAHLGTGNYNEKTA--RIYTDLSLFTADPEIGADVAKL 157 (352)
T ss_dssp E--T--------------T-EE--EEEEEEEEETTEEEEEEEEESS-SSTTHC--CCEEEEEEEE--HHHHHHHHHH
T ss_pred cCCC--------------ChhheeeEEEEEEEeCCcEEEEEEEcCCCcCccch--hheecceeecCCHHHHHHHHHH
Confidence 4432 2579999999732 799999999999998 6778899999999999988764
No 139
>cd06891 PX_Vps17p The phosphoinositide binding Phox Homology domain of yeast sorting nexin Vps17p. The PX domain is a phosphoinositide (PI) binding module present in many proteins with diverse functions. Sorting nexins (SNXs) make up the largest group among PX domain containing proteins. They are involved in regulating membrane traffic and protein sorting in the endosomal system. The PX domain of SNXs binds PIs and targets the protein to PI-enriched membranes. SNXs differ from each other in PI-binding specificity and affinity, and the presence of other protein-protein interaction domains, which help determine subcellular localization and specific function in the endocytic pathway. Vsp17p forms a dimer with Vps5p, the yeast counterpart of human SNX1, and is part of the retromer complex that mediates the transport of the carboxypeptidase Y receptor Vps10p from endosomes to Golgi. Similar to Vps5p and SNX1, Vps17p harbors a Bin/Amphiphysin/Rvs (BAR) domain, which detects membrane curvatur
Probab=95.88 E-value=0.032 Score=55.89 Aligned_cols=101 Identities=17% Similarity=0.279 Sum_probs=65.3
Q ss_pred eEEEeeeeecCCCCCCcceeEEEEEEEec--ceE---E-EEEEehhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCC
Q 002219 45 KASIVSVSRPDAGDISPMLLSYTIEVQYK--QFK---W-KLVKKASQVFYLHFALKRRAFFEEIQEKQEQVKEWLQNLGM 118 (952)
Q Consensus 45 ~v~I~~~er~~s~~~~~~~~~Y~Iel~~g--~~~---W-~v~r~~~~f~~Lh~~lk~~~~~~~~~~~~~~~~~~~~~~~~ 118 (952)
.|+|++-||.-+ . ...|++.++-+ .|+ - .|.|+|+||..||.+|... ..+.
T Consensus 31 ~i~Vtd~ek~G~--~---~~~~~~~~~Tnlp~Fr~~~~~~VrRRysdF~~L~~~L~~~------------------~~~~ 87 (140)
T cd06891 31 RVRVTGIERNKS--K---DPIIRFDVTTNLPTFRSSTYKDVRRTYEEFQKLFKYLNGA------------------NPET 87 (140)
T ss_pred EEEEeCceecCC--C---CeEEEEEEeeCCcccCCCCCCceeeeHHHHHHHHHHHHHH------------------CCCc
Confidence 589999998444 2 34566666433 343 4 5999999999999988731 1110
Q ss_pred CCCccccccCccccccccccccccccCCCCCCCCCCCCCC--ccccCCCcchHHHHHHHHHHHHHHhccccccchhhhhe
Q 002219 119 GDHMAVVQEDDEGDEIAVNHDESSKKRDVPANAALPVIRP--ALGRQHSMSDRAKVAMQQYLNHFLGNMDIVNSREVCKF 196 (952)
Q Consensus 119 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~lp~~~~--~~~~~~~~~~r~~~~LE~YL~~lL~~~~~~n~~~l~~F 196 (952)
-+|. ||.-.. ..+..+. ..+++..||.||+.+..++.+..+..+..|
T Consensus 88 ---------------------------iVPp---lP~k~~~~~~~~~E~-~~~rr~~LqrfL~RV~~hP~L~~d~~l~~F 136 (140)
T cd06891 88 ---------------------------FVPA---LPLPSTSYGSNNEED-ARKLKANLQRWFNRVCSDPILIRDEELRFF 136 (140)
T ss_pred ---------------------------EeCC---CCCccccCCCCCHHH-HHHHHHHHHHHHHHHhCChhhccCHHHHHH
Confidence 0111 221100 1112222 335567999999999999999999999999
Q ss_pred eee
Q 002219 197 LEA 199 (952)
Q Consensus 197 lev 199 (952)
||-
T Consensus 137 LEs 139 (140)
T cd06891 137 IES 139 (140)
T ss_pred hcc
Confidence 983
No 140
>PLN03008 Phospholipase D delta
Probab=95.75 E-value=0.038 Score=68.72 Aligned_cols=59 Identities=19% Similarity=0.227 Sum_probs=38.6
Q ss_pred HHHHHHHHHHHhcccEEEEeeecCCceeEEEcC----------CCCchhHHHHHHHHHHh--hCCcEEEEEEccch
Q 002219 373 AAFEAIASSIEDAKSEIFICGWWLCPELYLRRP----------FHNHASSRLDALLEAKA--KQGVQIYILLYKEV 436 (952)
Q Consensus 373 ~~f~al~~aI~~Ak~~I~I~~W~lsPe~Yl~rp----------~~d~~~~rL~~~L~~aA--~rGVkVrILl~d~~ 436 (952)
....+.+++|++||+.|||.. ++|+-.- +....+..|...|.+|. .++-+|+|++.-..
T Consensus 567 SIq~aYi~aIr~A~hFIYIEN-----QYFiss~~~w~~~~~~~~~n~I~~eia~kI~~ki~~~e~f~V~IViP~~p 637 (868)
T PLN03008 567 SIQTAYIQTIRSAQHFIYIEN-----QYFLGSSYAWPSYRDAGADNLIPMELALKIVSKIRAKERFAVYVVIPLWP 637 (868)
T ss_pred hHHHHHHHHHHhhccEEEEeh-----hhhhccccccccccccccccchhHHHHHHHHHHHhCCCCCEEEEEECCCC
Confidence 346899999999999999964 3333221 00123445666666654 56799999986654
No 141
>cd01220 PH_CDEP Chondrocyte-derived ezrin-like domain containing protein (CDEP) Pleckstrin homology (PH) domain. Chondrocyte-derived ezrin-like domain containing protein (CDEP) Pleckstrin homology (PH) domain. CDEP consists of a Ferm domain, a rhoGEF (DH) domain followed by two PH domains. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains. PH domains are found in cellular signaling proteins such as serine/threonine kinase, tyrosine kinases, regulators of G-proteins, endocytotic GTPases, adaptors, as well as cytoskeletal associated molecules and in lipid associated enzymes.
Probab=95.73 E-value=0.086 Score=49.76 Aligned_cols=35 Identities=26% Similarity=0.452 Sum_probs=32.4
Q ss_pred cceeEEEEeCceEEEEEecchhhHHHHHHHHHhcc
Q 002219 302 LRHAFKVTCGVRSIRLRTRTGAKVRDWVAAINDAG 336 (952)
Q Consensus 302 ~~~~~~i~~~~r~l~l~~~s~~~~~~w~~~i~~~~ 336 (952)
..|+|.|...++++.+.|.|..+..+|+.+|.++.
T Consensus 63 ~~~~F~I~~~~ks~~l~A~s~~Ek~~Wi~~i~~aI 97 (99)
T cd01220 63 VPHCFTIFGGQCAITVAASTRAEKEKWLADLSKAI 97 (99)
T ss_pred CceeEEEEcCCeEEEEECCCHHHHHHHHHHHHHHh
Confidence 46899999999999999999999999999999864
No 142
>PF15410 PH_9: Pleckstrin homology domain; PDB: 1WJM_A 1BTN_A 1MPH_A.
Probab=95.71 E-value=0.07 Score=51.78 Aligned_cols=103 Identities=22% Similarity=0.384 Sum_probs=58.7
Q ss_pred cceeEEEeeecCCccCCCCCCcccccCCCccccCCcceEEEEEeCCeEEEEeCC---CCCCcc-----------EEEEEe
Q 002219 212 LKEDYVMAKHLPKISRNDDSRKCCCCPLFTCCNDNWQKVWAVLKPGFLALLADP---FDTKPM-----------DIIVFD 277 (952)
Q Consensus 212 gKEG~l~kr~~~~~~G~~~~~~~~~~~~~~~~~~rw~kRWfvVKdSfL~yv~d~---~~~~~~-----------~v~l~D 277 (952)
.|||+|+-++..-..| .+ . ..-.+.|+..|+||+.+.|.++++. .++... .++-+.
T Consensus 1 ~keG~l~RK~~~~~~g--kk---~-----~~~~R~Wk~~y~vL~g~~L~~~k~~~~~~~~~~~~~~~~~~~~p~~~i~L~ 70 (119)
T PF15410_consen 1 YKEGILMRKHELESGG--KK---A-----SRSKRSWKQVYAVLQGGQLYFYKDEKSPASSTPPDIQSVENAKPDSSISLH 70 (119)
T ss_dssp --EEEEEEEEEEECTT--CC-----------S---EEEEEEEEETTEEEEESSHHHHCCT-BS---SS--E-----EE-T
T ss_pred CceEEEEEEEEEcCCC--CC---c-----CCCCCCccEEeEEEECCEEEEEccCcccccCCcccccccccCcceeEEEec
Confidence 4899998775422212 11 0 0122689999999999999999872 222221 112111
Q ss_pred CCCCCCCCCCCcccccccccccCCcceeEEEEeC-ceEEEEEecchhhHHHHHHHHHhcc
Q 002219 278 VLPASDGNGEGRVSLATEVKERNPLRHAFKVTCG-VRSIRLRTRTGAKVRDWVAAINDAG 336 (952)
Q Consensus 278 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~-~r~l~l~~~s~~~~~~w~~~i~~~~ 336 (952)
. .++....+.+..+|-|++... +....+.|.+...+.+|+..|+..+
T Consensus 71 ~------------a~a~~a~dY~Kr~~VFrL~~~dg~e~Lfqa~~~~~m~~Wi~~IN~~A 118 (119)
T PF15410_consen 71 H------------ALAEIASDYTKRKNVFRLRTADGSEYLFQASDEEEMNEWIDAINYAA 118 (119)
T ss_dssp T-------------EEEEETTBTTCSSEEEEE-TTS-EEEEE-SSHHHHHHHHHHHHHH-
T ss_pred c------------eEEEeCcccccCCeEEEEEeCCCCEEEEECCCHHHHHHHHHHHhhhc
Confidence 1 111111234445788999876 5799999999999999999999753
No 143
>PLN02270 phospholipase D alpha
Probab=95.15 E-value=0.042 Score=68.15 Aligned_cols=60 Identities=18% Similarity=0.215 Sum_probs=39.7
Q ss_pred HHHHHHHHHHHHhcccEEEEeeecCCceeEEEcCC-C--------------CchhHHHHHHHHHH--hhCCcEEEEEEcc
Q 002219 372 KAAFEAIASSIEDAKSEIFICGWWLCPELYLRRPF-H--------------NHASSRLDALLEAK--AKQGVQIYILLYK 434 (952)
Q Consensus 372 ~~~f~al~~aI~~Ak~~I~I~~W~lsPe~Yl~rp~-~--------------d~~~~rL~~~L~~a--A~rGVkVrILl~d 434 (952)
.+...+.++||++|+++|||.. .|+.... . ......|...|.+| +.+|-+|+|++.-
T Consensus 498 rsI~~aYi~AI~~A~~~IYIEN------QYF~sss~~w~~~~~~~~~~~~~nlIp~el~~kI~~ri~~~e~f~VyIViP~ 571 (808)
T PLN02270 498 RSIQDAYIHAIRRAKDFIYIEN------QYFLGSSFAWSADGIKPEDINALHLIPKELSLKIVSKIEAGEKFTVYVVVPM 571 (808)
T ss_pred hHHHHHHHHHHHhhhhEEEeeh------hhhhhhhhhhcccccccccccccccchHHHHHHHHHHHhCCCCCEEEEEECC
Confidence 5789999999999999999975 3333210 0 01233455555554 4568999999865
Q ss_pred chh
Q 002219 435 EVA 437 (952)
Q Consensus 435 ~~~ 437 (952)
..+
T Consensus 572 ~pe 574 (808)
T PLN02270 572 WPE 574 (808)
T ss_pred CCC
Confidence 553
No 144
>cd01256 PH_dynamin Dynamin pleckstrin homology (PH) domain. Dynamin pleckstrin homology (PH) domain. Dynamin is a GTPase that regulates endocytic vesicle formation. It has an N-terminal GTPase domain, followed by a PH domain, a GTPase effector domain and a C-terminal proline arginine rich domain. Dynamin-like proteins, which are found in metazoa, plants and yeast have the same domain architecture as dynamin, but lack the PH domain. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains.
Probab=95.11 E-value=0.1 Score=49.05 Aligned_cols=80 Identities=21% Similarity=0.270 Sum_probs=58.5
Q ss_pred CcceEEEEEeCCeEEEEeCCCCCCccEEEEEeCCCCCCCCCCCcccccccccccCCcceeEEEEeC--------ceEEEE
Q 002219 246 NWQKVWAVLKPGFLALLADPFDTKPMDIIVFDVLPASDGNGEGRVSLATEVKERNPLRHAFKVTCG--------VRSIRL 317 (952)
Q Consensus 246 rw~kRWfvVKdSfL~yv~d~~~~~~~~v~l~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~--------~r~l~l 317 (952)
.-+.+|||+.+++|.|++|-++..++.++-.|...--+. .+.. -..+|-|.+.|. -+.|.|
T Consensus 18 gsK~~WFVLt~~~L~wykd~eeKE~kyilpLdnLk~Rdv--------e~gf---~sk~~~FeLfnpd~rnvykd~k~lel 86 (110)
T cd01256 18 GSKDYWFVLTSESLSWYKDDEEKEKKYMLPLDGLKLRDI--------EGGF---MSRNHKFALFYPDGRNVYKDYKQLEL 86 (110)
T ss_pred CCcceEEEEecceeeeecccccccccceeeccccEEEee--------cccc---cCCCcEEEEEcCcccccccchheeee
Confidence 456789999999999999988888999998885311000 0000 112466776655 357999
Q ss_pred EecchhhHHHHHHHHHhcc
Q 002219 318 RTRTGAKVRDWVAAINDAG 336 (952)
Q Consensus 318 ~~~s~~~~~~w~~~i~~~~ 336 (952)
-|.+...+..|.++.-.++
T Consensus 87 ~~~~~e~vdswkasflrag 105 (110)
T cd01256 87 GCETLEEVDSWKASFLRAG 105 (110)
T ss_pred cCCCHHHHHHHHHHHHhcc
Confidence 9999999999999988876
No 145
>cd01242 PH_ROK Rok (Rho- associated kinase) pleckstrin homology (PH) domain. Rok (Rho- associated kinase) pleckstrin homology (PH) domain. Rok is a serine/threonine kinase that binds GTP-rho. It consists of a kinase domain, a coiled coil region and a PH domain. The Rok PH domain is interrupted by a C1 domain. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains.
Probab=95.06 E-value=0.23 Score=47.72 Aligned_cols=87 Identities=20% Similarity=0.328 Sum_probs=59.0
Q ss_pred CCcceEEEEEeCCeEEEEeCCCC---CCccEEEEEeCCCCCCCCCCCcccccccccccCCcceeEEEEeCc--eEEEEEe
Q 002219 245 DNWQKVWAVLKPGFLALLADPFD---TKPMDIIVFDVLPASDGNGEGRVSLATEVKERNPLRHAFKVTCGV--RSIRLRT 319 (952)
Q Consensus 245 ~rw~kRWfvVKdSfL~yv~d~~~---~~~~~v~l~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~--r~l~l~~ 319 (952)
..|+++|.||.+.=|.+++...+ ..+..||-+|..|+...-...++..+ ..+...+=|+|.... +.+-|-+
T Consensus 18 ~gW~r~yvVv~~~Kl~lYd~e~~~~~~~p~~vldl~~~fhv~~V~asDVi~a----~~kDiP~IF~I~~~~~~~~lllLA 93 (112)
T cd01242 18 PGWKKQYVVVSSRKILFYNDEQDKENSTPSMILDIDKLFHVRPVTQGDVYRA----DAKEIPKIFQILYANEARDLLLLA 93 (112)
T ss_pred CCceEEEEEEeCCEEEEEecCccccCCCcEEEEEccceeeeecccHHHeeec----CcccCCeEEEEEeCCccceEEEEe
Confidence 46999999999999999875442 34777766665544221111222212 134455666666654 8999999
Q ss_pred cchhhHHHHHHHHHhc
Q 002219 320 RTGAKVRDWVAAINDA 335 (952)
Q Consensus 320 ~s~~~~~~w~~~i~~~ 335 (952)
.+...-+.|..++...
T Consensus 94 ~s~~ek~kWV~~L~~~ 109 (112)
T cd01242 94 PQTDEQNKWVSRLVKK 109 (112)
T ss_pred CCchHHHHHHHHHHHh
Confidence 9999999999998764
No 146
>KOG1329 consensus Phospholipase D1 [Lipid transport and metabolism]
Probab=94.93 E-value=0.12 Score=64.41 Aligned_cols=120 Identities=17% Similarity=0.244 Sum_probs=65.9
Q ss_pred HHHHHHHHHHHHhcccEEEEeeecCCceeEEEcCC-----CCchhHHHHHHHHHHhhC--CcEEEEEEccchhhhh--hc
Q 002219 372 KAAFEAIASSIEDAKSEIFICGWWLCPELYLRRPF-----HNHASSRLDALLEAKAKQ--GVQIYILLYKEVALAL--KI 442 (952)
Q Consensus 372 ~~~f~al~~aI~~Ak~~I~I~~W~lsPe~Yl~rp~-----~d~~~~rL~~~L~~aA~r--GVkVrILl~d~~~~~l--~~ 442 (952)
...-.|.+.+|++|+|.|||.. ++||-.-. ....+..|..-+.+|-++ --+|+|++.=.+|... ..
T Consensus 565 ~SIq~AYv~~Ir~a~hFIYIEN-----QfFi~ss~~~~~~~n~v~~ela~rIv~a~ra~e~frVYIVIPL~PgfEG~~~p 639 (887)
T KOG1329|consen 565 DSIQNAYVKAIRNAEHFIYIEN-----QFFIGSSFNWDSVLNKVGDELALRIVKAIRAGEKFRVYIVIPLWPGFEGDDTP 639 (887)
T ss_pred HHHHHHHHHHHHhccceEEEee-----eeEEeeccCCCcccchHHHHHHHHHHHHHhcCCceEEEEEEeCCccccCCCCC
Confidence 3577889999999999999975 56664321 122344555445555554 4888888754332110 00
Q ss_pred chh-------hhH-----------HHHhccC-CCeEEEEcCC-----Cc-----CCCcccccCcceEEEEeCCeEEEccc
Q 002219 443 NSV-------YSK-----------RKLLSIH-ENVRVLRYPD-----HF-----ASGVYLWSHHEKLVIVDYQICFIGGL 493 (952)
Q Consensus 443 ~s~-------~~k-----------~~L~~l~-~gI~V~r~P~-----~~-----~~~~~~~rhHrKivVIDg~vAFvGGi 493 (952)
++. |.. ..|.+.. .+.+-+.|-. .. ...+..---|.|++|||++++.+|+.
T Consensus 640 ~~~svqaIl~wQyrTms~g~~sI~~~Lka~g~d~~~yi~f~~lr~~g~~e~~~~~~~~emIYVHsK~mIvDD~~vIIGSA 719 (887)
T KOG1329|consen 640 GSGSVQAILHWQYRTMSMGYKSIYKALKAVGLDPADYIDFLGLRCLGNREEQAQRLRREMIYVHSKLMIVDDEYVIIGSA 719 (887)
T ss_pred CcchHHHHHHHHHHHHhhhHHHHHHHHHHhcCCccccceeeeeeeeeccccccccceEEEEEEeeeeEEecCCEEEEeec
Confidence 110 111 1222211 1121111100 00 01123345799999999999999999
Q ss_pred cCC
Q 002219 494 DLC 496 (952)
Q Consensus 494 NL~ 496 (952)
||-
T Consensus 720 NIN 722 (887)
T KOG1329|consen 720 NIN 722 (887)
T ss_pred ccc
Confidence 995
No 147
>PF13918 PLDc_3: PLD-like domain
Probab=94.52 E-value=0.32 Score=50.61 Aligned_cols=57 Identities=23% Similarity=0.216 Sum_probs=38.4
Q ss_pred HHHHHHHHHhccCeEEEEeeeeccCCCC--ChhHHHHHHHHHHHHHHHH-HHcCCceEEEEEecCC
Q 002219 766 HCAYCSLIEKAEHFIYIENQFFISGLSG--DEIIRNRVLESLYRRILRA-YNEKKCFRVIIVIPLL 828 (952)
Q Consensus 766 ~~ayl~~I~~A~~~IYIEnqyFis~~~~--~~~v~n~I~~AL~~RI~~A-~~~g~~vrV~IvlPl~ 828 (952)
.+|.+..|..|++||||+=.-|+|...- .....-.|=+||. +| ..||++||+ ++...
T Consensus 84 ldAIl~~I~~A~~fI~IsVMdY~P~~~~~~~~~YWP~ID~ALR----~AA~~R~V~VRl--LIS~W 143 (177)
T PF13918_consen 84 LDAILSVIDSAKKFIYISVMDYLPTSRYSKPNRYWPVIDDALR----RAAIERGVKVRL--LISCW 143 (177)
T ss_pred HHHHHHHHHhHhheEEEEEeecCCeeecCCCCCcchhHHHHHH----HHHHHcCCeEEE--EEeec
Confidence 3577999999999999998878885321 1123456777875 44 478855555 46643
No 148
>COG0855 Ppk Polyphosphate kinase [Inorganic ion transport and metabolism]
Probab=94.48 E-value=0.091 Score=63.30 Aligned_cols=100 Identities=22% Similarity=0.356 Sum_probs=75.4
Q ss_pred HHHHHHHHHHHHHHHcCCceEEEEEecCCCCCCCCCCCCCchhHHHHHHHHHHHHHhhHHHHHHHHHHhcCCCccccccc
Q 002219 800 RVLESLYRRILRAYNEKKCFRVIIVIPLLPGFQGGVDDGGAASVRAIMHWQYRTICRGQNSILHNLYALLGPKTHDYISF 879 (952)
Q Consensus 800 ~I~~AL~~RI~~A~~~g~~vrV~IvlPl~pgf~g~~~d~~~~~~r~i~~~qy~ti~rg~~si~~~L~~~~Gv~~~~Yi~f 879 (952)
.|.+||. .|+++|+.|.|+ +-++.-|+.+ +=++|+ .+|.+ +|+.+ .
T Consensus 385 pIV~ALi----~AA~nGKqVtvl--VELkARFDEE----------~NI~WA------------k~LE~-AGvhV-----v 430 (696)
T COG0855 385 PIVRALI----DAAENGKQVTVL--VELKARFDEE----------ANIHWA------------KRLER-AGVHV-----V 430 (696)
T ss_pred HHHHHHH----HHHHcCCeEEEE--EEEhhhcChh----------hhhHHH------------HHHHh-CCcEE-----E
Confidence 6899997 999999777665 6666666532 235786 45777 89864 3
Q ss_pred ccccccccccCCCCcccccceeeeeEEEE----eC---cEEEEecccCCcCccCCCCCcceEEEEEchhhHHHhhhc
Q 002219 880 YGLRAYGRLFEDGPVATSQVYVHSKVMII----DD---SIALIGSANINDRSLLGSRDSEVSVGLYLFILRWELTDL 949 (952)
Q Consensus 880 ~~lr~~~~~~~~g~~~te~iyvHSKlmIV----DD---~~~iIGSANin~RSm~G~rDsEi~v~i~d~~~~~~~~~~ 949 (952)
||+- ..-+||||++| || +++-+|+-|.|..+- ..=+-++++-.|++++..++++
T Consensus 431 yG~~--------------glKtHAKm~lVvRrE~~~lrrY~HlGTGNYn~~TA--riYTD~sl~Tad~~i~~Dv~~l 491 (696)
T COG0855 431 YGVV--------------GLKTHAKMLLVVRREGGKLRRYVHLGTGNYNPKTA--RLYTDLSLLTADPEIGADVTDL 491 (696)
T ss_pred eccc--------------ceeeeeeEEEEEEecCCcEEEEEEecCCCCCccce--eeeeechhccCCHHHHHHHHHH
Confidence 4322 14699999987 33 789999999999998 6778888899999999988765
No 149
>cd07299 PX_TCGAP The phosphoinositide binding Phox Homology domain of Tc10/Cdc42 GTPase-activating protein. The PX domain is a phosphoinositide (PI) binding module present in many proteins with diverse functions such as cell signaling, vesicular trafficking, protein sorting, and lipid modification, among others. TCGAP (Tc10/Cdc42 GTPase-activating protein) contains N-terminal PX and Src Homology 3 (SH3) domains, a central Rho GAP domain, and C-terminal proline-rich regions. It is widely expressed in the brain where it is involved in regulating the outgrowth of axons and dendrites and is regulated by the protein tyrosine kinase Fyn. It interacts with cdc42 and TC10beta through its GAP domain and with phosphatidylinositol-(4,5)-bisphosphate [PI(4,5)P2] through its PX domain. It is translocated to the plasma membrane in adipocytes in response to insulin and may be involved in the regulation of insulin-stimulated glucose transport. TCGAP has also been named sorting nexins 26 (SNX26). SNXs
Probab=93.58 E-value=0.44 Score=45.41 Aligned_cols=32 Identities=19% Similarity=0.363 Sum_probs=28.4
Q ss_pred eeEEEEEEEe-cceEEEEEEehhhHHHHHHHHHH
Q 002219 63 LLSYTIEVQY-KQFKWKLVKKASQVFYLHFALKR 95 (952)
Q Consensus 63 ~~~Y~Iel~~-g~~~W~v~r~~~~f~~Lh~~lk~ 95 (952)
.++|.|.++. |+ .|.|+|+|-||..|...|-+
T Consensus 25 ~~~flv~V~cqgr-sW~v~RSyEdfr~LD~~LHr 57 (113)
T cd07299 25 DLVFLVQVTCQGR-SWMVLRSYEDFRTLDAHLHR 57 (113)
T ss_pred ceEEEEEEEecCc-ceEEeeeHHHHHHHHHHHHH
Confidence 5799999996 77 99999999999999987764
No 150
>cd01243 PH_MRCK MRCK (myotonic dystrophy-related Cdc42-binding kinase) pleckstrin homology (PH) domain. MRCK (myotonic dystrophy-related Cdc42-binding kinase) pleckstrin homology (PH) domain. MRCK consists of a serine/threonine kinase domain, a cysteine rich (C1) region, a PH domain and a p21 binding motif. It has been shown to promote cytoskeletal reorganization, which affects many biological processes. The MRCK PH domain is responsible for its targeting to cell to cell junctions. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains.
Probab=93.42 E-value=0.57 Score=45.78 Aligned_cols=87 Identities=22% Similarity=0.240 Sum_probs=55.2
Q ss_pred CCcceEEEEEeCCeEEEEeCCC--CCCccEE--EEEe---CCCCCCCCCCCcccccccccccCCcceeEEEEeC------
Q 002219 245 DNWQKVWAVLKPGFLALLADPF--DTKPMDI--IVFD---VLPASDGNGEGRVSLATEVKERNPLRHAFKVTCG------ 311 (952)
Q Consensus 245 ~rw~kRWfvVKdSfL~yv~d~~--~~~~~~v--~l~D---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~------ 311 (952)
..|+++|.||.+.=|.+++... +.++..+ +.+| ..|....-...++..+ .++...+=|+|+..
T Consensus 18 rGW~r~~vVv~~~Kl~lYd~e~~k~~~p~~~~~~vLdlrD~~fsV~~VtasDvi~a----~~kDiP~If~I~~~~~~~~~ 93 (122)
T cd01243 18 KGWQRALVVVCDFKLFLYDIAEDRASQPSVVISQVLDMRDPEFSVSSVLESDVIHA----SKKDIPCIFRVTTSQISASS 93 (122)
T ss_pred cCceEEEEEEeCCEEEEEeCCccccCCccCceeEEEEcCCCCEEEEEecHHHcccc----CcccCCeEEEEEEecccCCC
Confidence 4699999999999999887443 2233344 3334 3333211011111111 23445666777765
Q ss_pred -ceEEEEEecchhhHHHHHHHHHhc
Q 002219 312 -VRSIRLRTRTGAKVRDWVAAINDA 335 (952)
Q Consensus 312 -~r~l~l~~~s~~~~~~w~~~i~~~ 335 (952)
...+-+-+.|...-++|..++++.
T Consensus 94 ~~~~~~~lA~s~~eK~kWV~aL~~l 118 (122)
T cd01243 94 SKCSTLMLADTEEEKSKWVGALSEL 118 (122)
T ss_pred CccEEEEEeCCchHHHHHHHHHHHH
Confidence 378889999999999999999884
No 151
>cd01218 PH_phafin2 Phafin2 Pleckstrin Homology (PH) domain. Phafin2 Pleckstrin Homology (PH) domain. Phafin contains a PH domain and a FYVE domain. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains. PH domains are found in cellular signaling proteins such as serine/threonine kinase, tyrosine kinsases, regulators of G-proteins, endocytotic GTPases, adaptors, as well as cytoskeletal associated molecules and in lipid associated enzymes.
Probab=92.80 E-value=1.1 Score=42.81 Aligned_cols=84 Identities=14% Similarity=0.235 Sum_probs=54.9
Q ss_pred ccCCcceEEEEEeCCeEEEEeCCCCCCccEE-EEEeCCCCCCCCCCCcccccccccccCCcceeEEEEeCceEEEEEecc
Q 002219 243 CNDNWQKVWAVLKPGFLALLADPFDTKPMDI-IVFDVLPASDGNGEGRVSLATEVKERNPLRHAFKVTCGVRSIRLRTRT 321 (952)
Q Consensus 243 ~~~rw~kRWfvVKdSfL~yv~d~~~~~~~~v-~l~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~r~l~l~~~s 321 (952)
|..+-++|+|.+=+..|+|-+-.-.++-..+ -+++- + .+.+. .+++....+++|.|.+..++..+.|.|
T Consensus 14 ~rk~~~~R~ffLFnD~LvY~~~~~~~~~~~~~~~i~L----~-----~~~v~-~~~d~~~~~n~f~I~~~~kSf~v~A~s 83 (104)
T cd01218 14 CRKKPKQRQFFLFNDILVYGNIVISKKKYNKQHILPL----E-----GVQVE-SIEDDGIERNGWIIKTPTKSFAVYAAT 83 (104)
T ss_pred ecCCCceEEEEEecCEEEEEEeecCCceeeEeeEEEc----c-----ceEEE-ecCCcccccceEEEecCCeEEEEEcCC
Confidence 3356678999999999999752112211111 11221 0 11111 112223457999999999999999999
Q ss_pred hhhHHHHHHHHHhcc
Q 002219 322 GAKVRDWVAAINDAG 336 (952)
Q Consensus 322 ~~~~~~w~~~i~~~~ 336 (952)
...-.+|+.+|+++.
T Consensus 84 ~~eK~eWl~~i~~ai 98 (104)
T cd01218 84 ETEKREWMLHINKCV 98 (104)
T ss_pred HHHHHHHHHHHHHHH
Confidence 999999999999875
No 152
>cd01259 PH_Apbb1ip Apbb1ip (Amyloid beta (A4) Precursor protein-Binding, family B, member 1 Interacting Protein) pleckstrin homology (PH) domain. Apbb1ip (Amyloid beta (A4) Precursor protein-Binding, family B, member 1 Interacting Protein) pleckstrin homology (PH) domain. Apbb1ip consists of a Ras-associated domain and a PH domain. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains.
Probab=92.21 E-value=0.23 Score=47.86 Aligned_cols=94 Identities=20% Similarity=0.280 Sum_probs=60.5
Q ss_pred ceeEEEeeecCCccCCCCCCcccccCCCccccCCcceEEEEEeCCeEEEEeCCCCCCccEEE---EEeCCCCCCCCCCCc
Q 002219 213 KEDYVMAKHLPKISRNDDSRKCCCCPLFTCCNDNWQKVWAVLKPGFLALLADPFDTKPMDII---VFDVLPASDGNGEGR 289 (952)
Q Consensus 213 KEG~l~kr~~~~~~G~~~~~~~~~~~~~~~~~~rw~kRWfvVKdSfL~yv~d~~~~~~~~v~---l~D~~~~~~~~~~~~ 289 (952)
.||+|..|. +| . ..|+|+||++|-|-|.|+-.-.+..++|.. .|+. .+
T Consensus 2 ~~g~LylK~----~g----------k------KsWKk~~f~LR~SGLYy~~Kgksk~srdL~cl~~f~~---------~n 52 (114)
T cd01259 2 MEGPLYLKA----DG----------K------KSWKKYYFVLRSSGLYYFPKEKTKNTRDLACLNLLHG---------HN 52 (114)
T ss_pred ccceEEEcc----CC----------C------ccceEEEEEEeCCeeEEccCCCcCCHHHHHHHHhccc---------Cc
Confidence 489998874 23 0 579999999999999998544444455433 2332 12
Q ss_pred ccccc--cccccCCcceeEEEE-----e-CceEEEEEecc-hhhHHHHHHHHHhc
Q 002219 290 VSLAT--EVKERNPLRHAFKVT-----C-GVRSIRLRTRT-GAKVRDWVAAINDA 335 (952)
Q Consensus 290 ~~~~~--~~~~~~~~~~~~~i~-----~-~~r~l~l~~~s-~~~~~~w~~~i~~~ 335 (952)
|..+. ..+-..|+.|+|.|. + +++.|+.-|.. +.....|+.+|+-+
T Consensus 53 vY~~~~~kKk~kAPTd~~F~~K~~~~q~~~s~~ik~lCaeDe~t~~~W~ta~Ri~ 107 (114)
T cd01259 53 VYTGLGWRKKYKSPTDYCFGFKAVGDQSKGSQSIKYLCAEDLPTLDRWLTAIRIA 107 (114)
T ss_pred EEEEechhhccCCCCCceEEEeccccCcccchhheeeccCCHHHHHHHHHHHHHH
Confidence 32221 112245678888773 2 35778877755 66668999999865
No 153
>KOG2059 consensus Ras GTPase-activating protein [Signal transduction mechanisms]
Probab=92.04 E-value=0.52 Score=57.34 Aligned_cols=150 Identities=17% Similarity=0.315 Sum_probs=96.4
Q ss_pred HHHHHHHHHHHhcccc-ccchhhhheee-eccCCCCCCCCC----CcceeEEEeeecCCccCCCCCCcccccCCCccccC
Q 002219 172 VAMQQYLNHFLGNMDI-VNSREVCKFLE-ASKLSFSPEYGP----KLKEDYVMAKHLPKISRNDDSRKCCCCPLFTCCND 245 (952)
Q Consensus 172 ~~LE~YL~~lL~~~~~-~n~~~l~~Fle-vS~~sf~~~~G~----KgKEG~l~kr~~~~~~G~~~~~~~~~~~~~~~~~~ 245 (952)
.-+|-|+..+.+...- .+--.+..||| +|..+-...+++ .-|||.+.+|-.++ | . +. ..
T Consensus 520 s~kE~~~~~v~~~v~~e~~~~~~~~fld~is~~~~~~~~~p~~p~v~k~glm~kr~~gr--~----------~-~~--~~ 584 (800)
T KOG2059|consen 520 SWKEPLMPTVFETVTEEQHFIAVKVFLDEISSVGDRSSLSPQEPVVLKEGLMIKRAQGR--G----------R-FG--KK 584 (800)
T ss_pred hhhhhhhHHHHHHHHHhHhHHHHHhhhhcccccccccccCCCCCceecccceEeccccc--c----------c-hh--hh
Confidence 4567788888765442 35556677886 566666555554 24566555442211 1 1 11 14
Q ss_pred CcceEEEEEeCCeEEEEeCCCCCCccEEEEEeCCCCCCCCCCCcccccccccc-cCCcceeEEEEeCceEEEEEecchhh
Q 002219 246 NWQKVWAVLKPGFLALLADPFDTKPMDIIVFDVLPASDGNGEGRVSLATEVKE-RNPLRHAFKVTCGVRSIRLRTRTGAK 324 (952)
Q Consensus 246 rw~kRWfvVKdSfL~yv~d~~~~~~~~v~l~D~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~i~~~~r~l~l~~~s~~~ 324 (952)
.++||||-+...-|.|-++|....+..|=|=+ |.....++| +-..+|-|+|....|.+.+.|++--+
T Consensus 585 ~FKKryf~LT~~~Ls~~Ksp~~q~~~~Ipl~n------------I~avEklee~sF~~knv~qVV~~drtly~Q~~n~vE 652 (800)
T KOG2059|consen 585 NFKKRYFRLTTEELSYAKSPGKQPIYTIPLSN------------IRAVEKLEEKSFKMKNVFQVVHTDRTLYVQAKNCVE 652 (800)
T ss_pred hhhheEEEeccceeEEecCCccCcccceeHHH------------HHHHHHhhhhccCCCceEEEEecCcceeEecCCchH
Confidence 57799999999999999999777666554433 111111111 22346779998888999999999999
Q ss_pred HHHHHHHHHhccCCCCCCCCCCCCCCCCCC
Q 002219 325 VRDWVAAINDAGLRPPEGWCHPHRFGSFAP 354 (952)
Q Consensus 325 ~~~w~~~i~~~~~~~~~~~~~~~rf~sfap 354 (952)
+.+|..+|..... +..+|..+|-|
T Consensus 653 andWldaL~kvs~------~N~~rLas~HP 676 (800)
T KOG2059|consen 653 ANDWLDALRKVSC------CNQNRLASYHP 676 (800)
T ss_pred HHHHHHHHHHHhc------cCcchhhhcCC
Confidence 9999999988652 23445555544
No 154
>cd01234 PH_CADPS CADPS (Ca2+-dependent activator protein) Pleckstrin homology (PH) domain. CADPS (Ca2+-dependent activator protein) Pleckstrin homology (PH) domain. CADPS is a calcium-dependent activator involved in secretion. It contains a central PH domain that binds to phosphoinositide 4,5 bisphosphate containing liposomes. However, membrane association may also be mediated by binding to phosphatidlyserine via general electrostatic interactions. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains.
Probab=91.88 E-value=0.25 Score=46.96 Aligned_cols=84 Identities=21% Similarity=0.285 Sum_probs=49.2
Q ss_pred CCcceEEEEEeC----CeEEEEeCCCCCCccEEEEEeCCCCCC------CCCCCcccccccccccCCcceeEEEEeCceE
Q 002219 245 DNWQKVWAVLKP----GFLALLADPFDTKPMDIIVFDVLPASD------GNGEGRVSLATEVKERNPLRHAFKVTCGVRS 314 (952)
Q Consensus 245 ~rw~kRWfvVKd----SfL~yv~d~~~~~~~~v~l~D~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~i~~~~r~ 314 (952)
.+|+||||+++. +|.+|--.-....|.+.+-+|. +.++ ++-.+.+. -.+-++=|...--+..
T Consensus 17 KkWKKRwFvL~qvsQYtfamcsy~ekks~P~e~~qldG-yTvDy~~~~~~~~~~~~~-------~~gg~~ff~avkegd~ 88 (117)
T cd01234 17 KKWKKRFFVLVQVSQYTFAMCSYREKKAEPTEFIQLDG-YTVDYMPESDPDPNSELS-------LQGGRHFFNAVKEGDE 88 (117)
T ss_pred hhhheeEEEEEchhHHHHHHHhhhhhcCCchhheeecc-eEEeccCCCCCCcccccc-------cccchhhhheeccCcE
Confidence 589999999995 2333332222345667676664 2111 10000010 1122344555555678
Q ss_pred EEEEecchhhHHHHHHHHHhcc
Q 002219 315 IRLRTRTGAKVRDWVAAINDAG 336 (952)
Q Consensus 315 l~l~~~s~~~~~~w~~~i~~~~ 336 (952)
+++-|.++-.-.-|++++-.+.
T Consensus 89 ~~fa~~de~~r~lwvqa~yrat 110 (117)
T cd01234 89 LKFATDDENERHLWVQAMYRAT 110 (117)
T ss_pred EEEeccchHHHHHHHHHHHHHc
Confidence 9999998888888999998864
No 155
>cd07291 PX_SNX5 The phosphoinositide binding Phox Homology domain of Sorting Nexin 5. The PX domain is a phosphoinositide (PI) binding module present in many proteins with diverse functions. Sorting nexins (SNXs) make up the largest group among PX domain containing proteins. They are involved in regulating membrane traffic and protein sorting in the endosomal system. The PX domain of SNXs binds PIs and targets the protein to PI-enriched membranes. SNXs differ from each other in PI-binding specificity and affinity, and the presence of other protein-protein interaction domains, which help determine subcellular localization and specific function in the endocytic pathway. SNX5, abundantly expressed in macrophages, regulates macropinocytosis, a process that enables cells to internalize large amounts of external solutes. It may also be a component of the retromer complex, a membrane coat multimeric complex required for endosomal retrieval of lysosomal hydrolase receptors to the Golgi, acting
Probab=91.27 E-value=0.34 Score=48.38 Aligned_cols=29 Identities=17% Similarity=0.273 Sum_probs=25.8
Q ss_pred HHHHHHHHHHHHhccccccchhhhheeee
Q 002219 171 KVAMQQYLNHFLGNMDIVNSREVCKFLEA 199 (952)
Q Consensus 171 ~~~LE~YL~~lL~~~~~~n~~~l~~Flev 199 (952)
+..||.||+.+...+.+++...+..|||-
T Consensus 112 ~a~lE~fL~Ria~HP~l~~d~~f~~FLe~ 140 (141)
T cd07291 112 VQVHEVFLQRLSSHPSLSKDRNFHIFLEY 140 (141)
T ss_pred HHHHHHHHHHHhhCCeeccCcchhhhccC
Confidence 34599999999999999999999999984
No 156
>PF07894 DUF1669: Protein of unknown function (DUF1669); InterPro: IPR012461 This family is composed of sequences derived from hypothetical eukaryotic proteins of unknown function. Some members of this family are annotated as being potential phospholipases but no literature was found to support this.
Probab=90.99 E-value=1.6 Score=48.73 Aligned_cols=146 Identities=15% Similarity=0.128 Sum_probs=84.4
Q ss_pred CCCceEEEeecCCcccCCCcccHHHHHHHHHHHHHhccCeEEEEeeeeccCCCCChhHHHHHHHHHHHHHHHHH-HcCCc
Q 002219 740 RASCRCQIIRSVSQWSAGTSQLEESIHCAYCSLIEKAEHFIYIENQFFISGLSGDEIIRNRVLESLYRRILRAY-NEKKC 818 (952)
Q Consensus 740 ~~~~~vQilRS~~~wS~G~~~~E~sI~~ayl~~I~~A~~~IYIEnqyFis~~~~~~~v~n~I~~AL~~RI~~A~-~~g~~ 818 (952)
+|..+++|.=--| ...-.+|.+...++|++|++-|=|----|.-. .|..-|. .|+ +|+
T Consensus 116 ~g~Tr~~vy~qPp------~~~~p~IKE~vR~~I~~A~kVIAIVMD~FTD~---------dIf~DLl----eAa~kR~-- 174 (284)
T PF07894_consen 116 KGVTRATVYFQPP------KDGQPHIKEVVRRMIQQAQKVIAIVMDVFTDV---------DIFCDLL----EAANKRG-- 174 (284)
T ss_pred cCCceEEEEeCCC------CCCCCCHHHHHHHHHHHhcceeEEEeeccccH---------HHHHHHH----HHHHhcC--
Confidence 4556777763321 12234899999999999999999986555432 2443343 676 777
Q ss_pred eEEEEEecCCCCCCCCCCCCCchhHHHHHHHHHHHHHhhHHHHHHHHHHhcCCCcccccccccccccc---cccCCCCcc
Q 002219 819 FRVIIVIPLLPGFQGGVDDGGAASVRAIMHWQYRTICRGQNSILHNLYALLGPKTHDYISFYGLRAYG---RLFEDGPVA 895 (952)
Q Consensus 819 vrV~IvlPl~pgf~g~~~d~~~~~~r~i~~~qy~ti~rg~~si~~~L~~~~Gv~~~~Yi~f~~lr~~~---~~~~~g~~~ 895 (952)
|-|||++-... ++..+ +--.+ +++.... +.....|+-+ -....|.-+
T Consensus 175 VpVYiLLD~~~-------------~~~Fl---------------~Mc~~-~~v~~~~-~~nmrVRsv~G~~y~~rsg~k~ 224 (284)
T PF07894_consen 175 VPVYILLDEQN-------------LPHFL---------------EMCEK-LGVNLQH-LKNMRVRSVTGCTYYSRSGKKF 224 (284)
T ss_pred CcEEEEechhc-------------ChHHH---------------HHHHH-CCCChhh-cCCeEEEEecCCeeecCCCCee
Confidence 77888876321 12221 11122 3443321 1111112110 000011111
Q ss_pred cccceeeeeEEEEeCcEEEEecccCCcCccCCCCCcceEEEEEch
Q 002219 896 TSQVYVHSKVMIIDDSIALIGSANINDRSLLGSRDSEVSVGLYLF 940 (952)
Q Consensus 896 te~iyvHSKlmIVDD~~~iIGSANin~RSm~G~rDsEi~v~i~d~ 940 (952)
.+-+|.|.||||.+.|+.||.-+.+-|- ..|.=+..++.+.
T Consensus 225 --~G~~~eKF~lvD~~~V~~GSYSFtWs~~--~~~r~~~~~~tGq 265 (284)
T PF07894_consen 225 --KGQLKEKFMLVDGDKVISGSYSFTWSSS--RVHRNLVTVLTGQ 265 (284)
T ss_pred --eCcccceeEEEecccccccccceeeccc--ccccceeEEEecc
Confidence 2469999999999999999999988776 6666666666553
No 157
>PF11495 Regulator_TrmB: Archaeal transcriptional regulator TrmB; InterPro: IPR021586 TrmB is an alpha-glucoside sensing transcriptional regulator. The protein is the transcriptional repressor for gene cluster encoding trehalose/maltose ABC transporter in T.litoralis and P.furiosus []. TrmB has lost its DNA binding domain but retained its sugar recognition site. A nonreducing glucosyl residue is shared by all substrates bound to TrmB which suggests that its a common recognition motif []. ; PDB: 3QPH_A 2F5T_X.
Probab=90.22 E-value=0.49 Score=51.07 Aligned_cols=51 Identities=25% Similarity=0.238 Sum_probs=35.4
Q ss_pred HHHHHHHHHHHHHhccCeEEEEeeeeccCCCCChhHHHHHHHHHHHHHHHHHHcCCceEEEEEecC
Q 002219 762 EESIHCAYCSLIEKAEHFIYIENQFFISGLSGDEIIRNRVLESLYRRILRAYNEKKCFRVIIVIPL 827 (952)
Q Consensus 762 E~sI~~ayl~~I~~A~~~IYIEnqyFis~~~~~~~v~n~I~~AL~~RI~~A~~~g~~vrV~IvlPl 827 (952)
...|.+-..++|++|++.|||..+ . .....+.++| .+|.++| |+|.+++..
T Consensus 8 ~~~I~~~i~elI~~Ae~eI~is~~----~-----~~l~~l~~~L----~~a~~rG--V~V~li~~~ 58 (233)
T PF11495_consen 8 RETILERIRELIENAESEIYISIP----P-----EFLEELRDEL----EEAVDRG--VKVKLIVFG 58 (233)
T ss_dssp HHHHHHHHHHHHHC-SSEEEEEE-----G-----GGHHHHHHHH----HHHHHTT---EEEEEESS
T ss_pred HHHHHHHHHHHHHHhheEEEEEcC----H-----HHHHHHHHHH----HHHHHCC--CEEEEEEeC
Confidence 568999999999999999999853 2 1123455555 5888899 677776663
No 158
>cd07292 PX_SNX6 The phosphoinositide binding Phox Homology domain of Sorting Nexin 6. The PX domain is a phosphoinositide (PI) binding module present in many proteins with diverse functions. Sorting nexins (SNXs) make up the largest group among PX domain containing proteins. They are involved in regulating membrane traffic and protein sorting in the endosomal system. The PX domain of SNXs binds PIs and targets the protein to PI-enriched membranes. SNXs differ from each other in PI-binding specificity and affinity, and the presence of other protein-protein interaction domains, which help determine subcellular localization and specific function in the endocytic pathway. SNX6 forms a stable complex with SNX1 and may be a component of the retromer complex, a membrane coat multimeric complex required for endosomal retrieval of lysosomal hydrolase receptors to the Golgi, acting as a mammalian equivalent of yeast Vsp17p. It interacts with the receptor serine/threonine kinases from the transfo
Probab=89.66 E-value=0.91 Score=45.43 Aligned_cols=31 Identities=13% Similarity=0.136 Sum_probs=27.0
Q ss_pred HHHHHHHHHHHHHHhccccccchhhhheeee
Q 002219 169 RAKVAMQQYLNHFLGNMDIVNSREVCKFLEA 199 (952)
Q Consensus 169 r~~~~LE~YL~~lL~~~~~~n~~~l~~Flev 199 (952)
+++..+|-||+.+...+.+++...+..|||-
T Consensus 110 k~~a~~E~Fl~Ria~HP~l~~D~~f~~FLe~ 140 (141)
T cd07292 110 KTVAMHEVFLCRVAAHPILRKDLNFHVFLEY 140 (141)
T ss_pred HHHHHHHHHHHHHhcCCccccCcchhheecc
Confidence 3356889999999999999999999999984
No 159
>KOG2527 consensus Sorting nexin SNX11 [Intracellular trafficking, secretion, and vesicular transport]
Probab=89.12 E-value=0.4 Score=47.38 Aligned_cols=88 Identities=23% Similarity=0.342 Sum_probs=56.6
Q ss_pred cceeEEEEEEEecc--e---EEEEEEehhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCccccccCccccccc
Q 002219 61 PMLLSYTIEVQYKQ--F---KWKLVKKASQVFYLHFALKRRAFFEEIQEKQEQVKEWLQNLGMGDHMAVVQEDDEGDEIA 135 (952)
Q Consensus 61 ~~~~~Y~Iel~~g~--~---~W~v~r~~~~f~~Lh~~lk~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 135 (952)
.++|.|.|.+.-.- | .=+|.|+|+||.-||.+|.+.+ .++.+
T Consensus 33 ~~ytdYEI~~rTN~p~F~~k~S~VRRRYsdFewlr~~Ler~s----------------~kvvv----------------- 79 (144)
T KOG2527|consen 33 NRYTDYEIRCRTNSPSFKKKESCVRRRYSDFEWLRKRLERES----------------GKVVV----------------- 79 (144)
T ss_pred ccceeEEEEEecCchhhhhhhHHHHHHHHHHHHHHHHHHHhc----------------ccccC-----------------
Confidence 46899999998773 2 2357899999999999887511 01111
Q ss_pred cccccccccCCCCCCCCCCCCCCccccC---CCcchHHHHHHHHHHHHHHhccccccchhhhheee
Q 002219 136 VNHDESSKKRDVPANAALPVIRPALGRQ---HSMSDRAKVAMQQYLNHFLGNMDIVNSREVCKFLE 198 (952)
Q Consensus 136 ~~~~~~~~~~~~p~~~~lp~~~~~~~~~---~~~~~r~~~~LE~YL~~lL~~~~~~n~~~l~~Fle 198 (952)
|. ||. .++.++ ..+-+.+|.-||.||+.++..+.+-+..-|-.||+
T Consensus 80 ------------P~---LPg--K~~~~~~~fre~IEeRrqgLe~fl~kVaghpL~q~~~~Lh~Flq 128 (144)
T KOG2527|consen 80 ------------PE---LPG--KALFRQLPFREFIEERRQGLEVFLRKVAGHPLLQNERCLHLFLQ 128 (144)
T ss_pred ------------CC---CCc--HHHHhcCchHHHHHHHHHHHHHHHHHHhCchhhhccHHHHHHHH
Confidence 11 331 112211 12333445699999999999888776666666765
No 160
>PF09565 RE_NgoFVII: NgoFVII restriction endonuclease; InterPro: IPR019065 There are four classes of restriction endonucleases: types I, II,III and IV. All types of enzymes recognise specific short DNA sequences and carry out the endonucleolytic cleavage of DNA to give specific double-stranded fragments with terminal 5'-phosphates. They differ in their recognition sequence, subunit composition, cleavage position, and cofactor requirements [, ], as summarised below: Type I enzymes (3.1.21.3 from EC) cleave at sites remote from recognition site; require both ATP and S-adenosyl-L-methionine to function; multifunctional protein with both restriction and methylase (2.1.1.72 from EC) activities. Type II enzymes (3.1.21.4 from EC) cleave within or at short specific distances from recognition site; most require magnesium; single function (restriction) enzymes independent of methylase. Type III enzymes (3.1.21.5 from EC) cleave at sites a short distance from recognition site; require ATP (but doesn't hydrolyse it); S-adenosyl-L-methionine stimulates reaction but is not required; exists as part of a complex with a modification methylase methylase (2.1.1.72 from EC). Type IV enzymes target methylated DNA. Type II restriction endonucleases (3.1.21.4 from EC) are components of prokaryotic DNA restriction-modification mechanisms that protect the organism against invading foreign DNA. These site-specific deoxyribonucleases catalyse the endonucleolytic cleavage of DNA to give specific double-stranded fragments with terminal 5'-phosphates. Of the 3000 restriction endonucleases that have been characterised, most are homodimeric or tetrameric enzymes that cleave target DNA at sequence-specific sites close to the recognition site. For homodimeric enzymes, the recognition site is usually a palindromic sequence 4-8 bp in length. Most enzymes require magnesium ions as a cofactor for catalysis. Although they can vary in their mode of recognition, many restriction endonucleases share a similar structural core comprising four beta-strands and one alpha-helix, as well as a similar mechanism of cleavage, suggesting a common ancestral origin []. However, there is still considerable diversity amongst restriction endonucleases [, ]. The target site recognition process triggers large conformational changes of the enzyme and the target DNA, leading to the activation of the catalytic centres. Like other DNA binding proteins, restriction enzymes are capable of non-specific DNA binding as well, which is the prerequisite for efficient target site location by facilitated diffusion. Non-specific binding usually does not involve interactions with the bases but only with the DNA backbone []. This domain is found in NgoFVII restriction endonuclease, which recognises GCSGC but cleavage site is unknown. It is also found as the C-terminal domain of the res subunit of some type III restriction endonucleases.
Probab=88.00 E-value=0.44 Score=53.53 Aligned_cols=48 Identities=25% Similarity=0.108 Sum_probs=35.2
Q ss_pred cccceeeeeEEEE----eCcEEEEecccCCc--CccCCCCCcceEEEEEchhhHHHh
Q 002219 896 TSQVYVHSKVMII----DDSIALIGSANIND--RSLLGSRDSEVSVGLYLFILRWEL 946 (952)
Q Consensus 896 te~iyvHSKlmIV----DD~~~iIGSANin~--RSm~G~rDsEi~v~i~d~~~~~~~ 946 (952)
....-+|+||.+- =+..++|||||+.- =+. .+-.| ++++.|+.-+.++
T Consensus 76 ~~~~~~HgKlY~f~k~g~~~~a~IGSANfS~~~~~~--~~~~E-~~v~~D~~~a~~~ 129 (296)
T PF09565_consen 76 VPDPPYHGKLYIFSKNGKPFRAYIGSANFSQINGFT--RRQYE-AMVTCDPNEAEEY 129 (296)
T ss_pred eCCCCcccEEEEEecCCCceEEEEeecccccccccc--cccee-EEEecChHHHHHH
Confidence 3457899999998 23679999999987 223 57789 6777777655544
No 161
>cd07278 PX_RICS_like The phosphoinositide binding Phox Homology domain of PX-RICS-like proteins. The PX domain is a phosphoinositide (PI) binding module present in many proteins with diverse functions such as cell signaling, vesicular trafficking, protein sorting, and lipid modification, among others. Members of this family include PX-RICS, TCGAP (Tc10/Cdc42 GTPase-activating protein), and similar proteins. They contain N-terminal PX and Src Homology 3 (SH3) domains, a central Rho GAP domain, and C-terminal extensions. They act as Rho GTPase-activating proteins. PX-RICS is the main isoform expressed during neural development. It is involved in neural functions including axon and dendrite extension, postnatal remodeling, and fine-tuning of neural circuits during early brain development. The PX domain of PX-RICS specifically binds phosphatidylinositol 3-phosphate (PI3P), PI4P, and PI5P. TCGAP is widely expressed in the brain where it is involved in regulating the outgrowth of axons and d
Probab=86.33 E-value=5.5 Score=38.33 Aligned_cols=33 Identities=21% Similarity=0.322 Sum_probs=29.9
Q ss_pred eeEEEEEEEecceEEEEEEehhhHHHHHHHHHH
Q 002219 63 LLSYTIEVQYKQFKWKLVKKASQVFYLHFALKR 95 (952)
Q Consensus 63 ~~~Y~Iel~~g~~~W~v~r~~~~f~~Lh~~lk~ 95 (952)
-++|.|.++...=.|.|+|+|-||..|...|-+
T Consensus 26 ~~~~~v~V~cqg~sW~VkRSyEdfr~LD~~LHr 58 (114)
T cd07278 26 ELVYLVQVQCQGKSWLVKRSYDDFRMLDKHLHQ 58 (114)
T ss_pred ceEEEEEEEeCCcceEEEeeHHHHHHHHHHHHH
Confidence 579999999999999999999999999887654
No 162
>KOG2273 consensus Membrane coat complex Retromer, subunit VPS5/SNX1, Sorting nexins, and related PX domain-containing proteins [Intracellular trafficking, secretion, and vesicular transport]
Probab=85.27 E-value=1.1 Score=53.85 Aligned_cols=35 Identities=20% Similarity=0.369 Sum_probs=31.0
Q ss_pred chHHHHHHHHHHHHHHhccccccchhhhheeeecc
Q 002219 167 SDRAKVAMQQYLNHFLGNMDIVNSREVCKFLEASK 201 (952)
Q Consensus 167 ~~r~~~~LE~YL~~lL~~~~~~n~~~l~~FlevS~ 201 (952)
..++|+.|+.||+.+...+.++++..+..||+...
T Consensus 194 ~e~rr~~L~~~l~r~~~hP~l~~~~~~~~FL~~~~ 228 (503)
T KOG2273|consen 194 IEKRRKALERFLNRLSLHPVLSNDEDFRLFLESDS 228 (503)
T ss_pred HHHHHHHHHHHHHHHhcCcccccCHHHHHHhcccc
Confidence 34667899999999999999999999999999884
No 163
>KOG0905 consensus Phosphoinositide 3-kinase [Signal transduction mechanisms]
Probab=84.71 E-value=1.8 Score=55.56 Aligned_cols=86 Identities=20% Similarity=0.384 Sum_probs=57.6
Q ss_pred eeEEEEEEEecc--eEEEEEEehhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCccccccCcccccccccccc
Q 002219 63 LLSYTIEVQYKQ--FKWKLVKKASQVFYLHFALKRRAFFEEIQEKQEQVKEWLQNLGMGDHMAVVQEDDEGDEIAVNHDE 140 (952)
Q Consensus 63 ~~~Y~Iel~~g~--~~W~v~r~~~~f~~Lh~~lk~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 140 (952)
...|.||+++-. -.=-|.|+|.+|.+||.+|++ .+|+
T Consensus 1392 ~YmYvveV~r~n~~e~s~i~RsF~EF~ElH~KL~~-------------------~Fp~---------------------- 1430 (1639)
T KOG0905|consen 1392 IYMYVVEVTRENQAEPSFIFRSFEEFQELHNKLRA-------------------RFPS---------------------- 1430 (1639)
T ss_pred eEEEEEEEEecCCCCchHHHHhHHHHHHHHHHHHH-------------------hCcc----------------------
Confidence 578999998764 344578999999999999985 1221
Q ss_pred ccccCCCCCCCCCCCCCCccccC--CCcchHHHHHHHHHHHHHHhccc-cccchhhhhee
Q 002219 141 SSKKRDVPANAALPVIRPALGRQ--HSMSDRAKVAMQQYLNHFLGNMD-IVNSREVCKFL 197 (952)
Q Consensus 141 ~~~~~~~p~~~~lp~~~~~~~~~--~~~~~r~~~~LE~YL~~lL~~~~-~~n~~~l~~Fl 197 (952)
-.+|+ +|. +-.++|. ..++.+|+..|+.||..|+..+. ++++.-|+-||
T Consensus 1431 ----~~Lp~---fP~-~~~~grsnikaVA~kR~~~ln~yl~~L~nas~EVa~cDlVyTFF 1482 (1639)
T KOG0905|consen 1431 ----MKLPS---FPH-RIHLGRSNIKAVAEKRIIELNKYLISLFNASDEVAHCDLVYTFF 1482 (1639)
T ss_pred ----ccCCC---CCc-eeeecccchhHHHHHHHHHHHHHHHHHhcCCchhhccceeeeee
Confidence 00111 221 1123332 35667888899999999997544 67787788776
No 164
>KOG1117 consensus Rho- and Arf-GTPase activating protein ARAP3 [Signal transduction mechanisms; Cytoskeleton]
Probab=84.05 E-value=8.5 Score=48.30 Aligned_cols=144 Identities=17% Similarity=0.212 Sum_probs=85.8
Q ss_pred HHHHHHHHhcccc-c-cchhhhheeeeccCCCCCCCCCCcceeEEEeeecCCccCCCCCCcccccCCCccccCCcceEEE
Q 002219 175 QQYLNHFLGNMDI-V-NSREVCKFLEASKLSFSPEYGPKLKEDYVMAKHLPKISRNDDSRKCCCCPLFTCCNDNWQKVWA 252 (952)
Q Consensus 175 E~YL~~lL~~~~~-~-n~~~l~~FlevS~~sf~~~~G~KgKEG~l~kr~~~~~~G~~~~~~~~~~~~~~~~~~rw~kRWf 252 (952)
|+-|..+|+...+ + .+--|.+|+-.-.+.|-.+.--.-|+|.|++|-- + + .. .-+.+.+-|+|
T Consensus 992 ekvleqvLqw~~l~csa~lvvkkh~~~q~~~~~~dr~gs~k~G~lKirEe----~--s-------rl--l~g~~fqdryf 1056 (1186)
T KOG1117|consen 992 EKVLEQVLQWSSLACSAYLVVKKHLTAQAIKHCSDRLGSIKEGILKIREE----P--S-------RL--LSGNKFQDRYF 1056 (1186)
T ss_pred HHHHHHHHhhhccCCcceEEeehhhhHhhhchhhhcccCcccceEEeccC----c--c-------cc--ccCCccceEEE
Confidence 5556666665443 2 2333334443333333323212347888877631 1 0 00 01145678999
Q ss_pred EEeCCeEEEEeCCCCCCccEEEEEeCCCCCCCCCCCcccccccccccCCcceeEEEEeCceEEEEEecchhhHHHHHHHH
Q 002219 253 VLKPGFLALLADPFDTKPMDIIVFDVLPASDGNGEGRVSLATEVKERNPLRHAFKVTCGVRSIRLRTRTGAKVRDWVAAI 332 (952)
Q Consensus 253 vVKdSfL~yv~d~~~~~~~~v~l~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~r~l~l~~~s~~~~~~w~~~i 332 (952)
|++++||..+++-.+.+- |..+.++ ...+.+|-.-|-+.++-.||+.-.-....-+.|.+.+....|+..|
T Consensus 1057 ilng~~l~lyke~KssKh------ek~wpl~---s~k~Y~GvkkklKpPt~wg~T~i~ekhh~~l~cd~s~~~~ewfts~ 1127 (1186)
T KOG1117|consen 1057 ILNGGCLFLYKEVKSSKH------EKEWPLS---SMKVYLGVKKKLKPPTSWGFTAISEKHHWYLCCDSSSEQTEWFTSI 1127 (1186)
T ss_pred EecCcEEEEeehhhcccc------ccccccc---cceEEeccccccCCCCccceeeeeecceEEEecCCccccchhhhhh
Confidence 999999999988766652 2222222 1234555443445667789988877778999999999999999988
Q ss_pred HhccCCCCCCC
Q 002219 333 NDAGLRPPEGW 343 (952)
Q Consensus 333 ~~~~~~~~~~~ 343 (952)
-.+. .....|
T Consensus 1128 fkaq-hd~d~w 1137 (1186)
T KOG1117|consen 1128 FKAQ-HDYDIW 1137 (1186)
T ss_pred hhhh-cccccC
Confidence 7653 233445
No 165
>COG3886 Predicted HKD family nuclease [DNA replication, recombination, and repair]
Probab=83.56 E-value=13 Score=39.41 Aligned_cols=110 Identities=22% Similarity=0.186 Sum_probs=68.5
Q ss_pred EEEecHH--HHHHHHHHHHHhcccEEEEeeecCCceeEEEcCCCCchhHHHHHHHHHHhhCCcEEEEEEccchhhhhhcc
Q 002219 366 QWFVDGK--AAFEAIASSIEDAKSEIFICGWWLCPELYLRRPFHNHASSRLDALLEAKAKQGVQIYILLYKEVALALKIN 443 (952)
Q Consensus 366 ~~lvdG~--~~f~al~~aI~~Ak~~I~I~~W~lsPe~Yl~rp~~d~~~~rL~~~L~~aA~rGVkVrILl~d~~~~~l~~~ 443 (952)
.+..+|. -...++...|+.|.+...+.+ ||-. + .-.-+.+.|..+..+||++|||-.+..+.. .
T Consensus 30 ~li~n~~ne~il~~Li~~l~k~~ef~IsVa-------Fit~---s-G~sll~~~L~d~~~Kgvkgkilts~YlnfT---d 95 (198)
T COG3886 30 KLISNGYNEKILPRLIDELEKADEFEISVA-------FITE---S-GLSLLFDLLLDLVNKGVKGKILTSDYLNFT---D 95 (198)
T ss_pred eeeeCCCchhHHHHHHHHHhcCCeEEEEEE-------EeeC---c-cHHHHHHHHHHHhcCCceEEEecccccCcc---C
Confidence 4444444 588999999999999777753 4433 2 245677888899999999999865443211 1
Q ss_pred hhhhHHHHhccCCCeEEEEcCCCcCCCcccccCcceEEEEe---CCeEEEccccCCC
Q 002219 444 SVYSKRKLLSIHENVRVLRYPDHFASGVYLWSHHEKLVIVD---YQICFIGGLDLCF 497 (952)
Q Consensus 444 s~~~k~~L~~l~~gI~V~r~P~~~~~~~~~~rhHrKivVID---g~vAFvGGiNL~~ 497 (952)
.... ++|+. ..||+++.+-.. ...+|-|-.|.- +-.|++|+.|++.
T Consensus 96 P~al-~~Ll~-~~nve~r~~~~~------~~~fH~KgYiFe~~~~~taiiGSsNlt~ 144 (198)
T COG3886 96 PVAL-RKLLM-LKNVELRVSTIG------SANFHTKGYIFEHNTGITAIIGSSNLTD 144 (198)
T ss_pred HHHH-HHHHh-hhccceEEEecC------ccccccceeEEEecceEEEEEccchhhh
Confidence 1111 33332 356777655211 123566655543 2359999999973
No 166
>cd07298 PX_RICS The phosphoinositide binding Phox Homology domain of PX-RICS. The PX domain is a phosphoinositide (PI) binding module present in many proteins with diverse functions such as cell signaling, vesicular trafficking, protein sorting, and lipid modification, among others. RICS is a Rho GTPase-activating protein for cdc42 and Rac1. It is implicated in the regulation of postsynaptic signaling and neurite outgrowth. An N-terminal splicing variant of RICS containing additional PX and Src Homology 3 (SH3) domains, also called PX-RICS, is the main isoform expressed during neural development. PX-RICS is involved in neural functions including axon and dendrite extension, postnatal remodeling, and fine-tuning of neural circuits during early brain development. The PX domain is involved in targeting of proteins to PI-enriched membranes, and may also be involved in protein-protein interaction. The PX domain of PX-RICS specifically binds phosphatidylinositol 3-phosphate (PI3P), PI4P, and
Probab=81.80 E-value=11 Score=36.56 Aligned_cols=33 Identities=15% Similarity=0.241 Sum_probs=27.9
Q ss_pred eeEEEEEEEecceEEEEEEehhhHHHHHHHHHH
Q 002219 63 LLSYTIEVQYKQFKWKLVKKASQVFYLHFALKR 95 (952)
Q Consensus 63 ~~~Y~Iel~~g~~~W~v~r~~~~f~~Lh~~lk~ 95 (952)
-++|.|.++.-.=.|.|+|+|-||..|...|.+
T Consensus 27 e~~~~v~v~Cqgrsw~VkRSyEdfr~LD~~LHr 59 (115)
T cd07298 27 ELVYLVQIACQGRSWIVKRSYEDFRVLDKHLHL 59 (115)
T ss_pred CeEEEEEEEeCCCceEEEeeHHHHHHHHHHHHH
Confidence 468888888766699999999999999987764
No 167
>KOG0690 consensus Serine/threonine protein kinase [Signal transduction mechanisms]
Probab=81.36 E-value=2.4 Score=48.00 Aligned_cols=96 Identities=17% Similarity=0.301 Sum_probs=60.1
Q ss_pred CcceeEEEeeecCCccCCCCCCcccccCCCccccCCcceEEEEEeC--CeEEEEeCCCCCCccEEEEEeCCCCCCCCCCC
Q 002219 211 KLKEDYVMAKHLPKISRNDDSRKCCCCPLFTCCNDNWQKVWAVLKP--GFLALLADPFDTKPMDIIVFDVLPASDGNGEG 288 (952)
Q Consensus 211 KgKEG~l~kr~~~~~~G~~~~~~~~~~~~~~~~~~rw~kRWfvVKd--SfL~yv~d~~~~~~~~v~l~D~~~~~~~~~~~ 288 (952)
--|||+|+|| | .-+..|++|||+++. ++|.|-+.|....+.---|= .|
T Consensus 15 vvkEgWlhKr------G--------------E~IknWRpRYF~l~~DG~~~Gyr~kP~~~~~~p~pLN----------nF 64 (516)
T KOG0690|consen 15 VVKEGWLHKR------G--------------EHIKNWRPRYFLLFNDGTLLGYRSKPKEVQPTPEPLN----------NF 64 (516)
T ss_pred hHHhhhHhhc------c--------------hhhhcccceEEEEeeCCceEeeccCCccCCCCccccc----------ch
Confidence 3599999987 3 112679999999984 78899888876654321111 11
Q ss_pred cccccccccccCCcceeEEEEeCceEEE----EEecchhhHHHHHHHHHhcc
Q 002219 289 RVSLATEVKERNPLRHAFKVTCGVRSIR----LRTRTGAKVRDWVAAINDAG 336 (952)
Q Consensus 289 ~~~~~~~~~~~~~~~~~~~i~~~~r~l~----l~~~s~~~~~~w~~~i~~~~ 336 (952)
.+.-+.-.+-..+..+.|.|...+.+-+ +-+.|...-++|..+|+..+
T Consensus 65 ~v~~cq~m~~erPrPntFiiRcLQWTTVIERTF~ves~~eRq~W~~AIq~vs 116 (516)
T KOG0690|consen 65 MVRDCQTMKTERPRPNTFIIRCLQWTTVIERTFYVESAEERQEWIEAIQAVS 116 (516)
T ss_pred hhhhhhhhhccCCCCceEEEEeeeeeeeeeeeeecCCHHHHHHHHHHHHHHh
Confidence 1111111122345567788887766443 34566777788999998765
No 168
>cd06892 PX_SNX5_like The phosphoinositide binding Phox Homology domain of Sorting Nexins 5 and 6. The PX domain is a phosphoinositide (PI) binding module present in many proteins with diverse functions. Sorting nexins (SNXs) make up the largest group among PX domain containing proteins. They are involved in regulating membrane traffic and protein sorting in the endosomal system. The PX domain of SNXs binds PIs and targets the protein to PI-enriched membranes. SNXs differ from each other in PI-binding specificity and affinity, and the presence of other protein-protein interaction domains, which help determine subcellular localization and specific function in the endocytic pathway. Members of this subfamily include SNX5, SNX6, and similar proteins. They contain a Bin/Amphiphysin/Rvs (BAR) domain, which detects membrane curvature, C-terminal to the PX domain, similar to other sorting nexins including SNX1-2. The PX-BAR structural unit helps determine the specific membrane-targeting of som
Probab=79.50 E-value=6.2 Score=39.83 Aligned_cols=25 Identities=20% Similarity=0.285 Sum_probs=22.3
Q ss_pred HHHHHHHHhccccccchhhhheeee
Q 002219 175 QQYLNHFLGNMDIVNSREVCKFLEA 199 (952)
Q Consensus 175 E~YL~~lL~~~~~~n~~~l~~Flev 199 (952)
|.||+++-..+.++++..+..|||.
T Consensus 116 e~FL~RiA~HP~L~~~~~l~~FLe~ 140 (141)
T cd06892 116 EVFLRRLASHPVLRNDANFRVFLEY 140 (141)
T ss_pred HHHHHHhccCCeeecCHhHHhhhcC
Confidence 5799999888999999999999985
No 169
>cd01261 PH_SOS Son of Sevenless (SOS) Pleckstrin homology (PH) domain. Son of Sevenless (SOS) Pleckstrin homology (PH) domain. SOS is a Ras guanine nucleotide exchange factor. It has a RhoGEF (DbH) domain, a PH domain, and a RasGEF domain. The SOS PH domain can bind to inositol 1,4,5-triphosphate. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains.
Probab=77.73 E-value=23 Score=34.41 Aligned_cols=78 Identities=13% Similarity=0.236 Sum_probs=52.4
Q ss_pred CcceEEEEEeCCeEEEEeCCCCCC------------ccEEEEEeCCCCCCCCCCCcccccccccccCCcceeEEEEeC-c
Q 002219 246 NWQKVWAVLKPGFLALLADPFDTK------------PMDIIVFDVLPASDGNGEGRVSLATEVKERNPLRHAFKVTCG-V 312 (952)
Q Consensus 246 rw~kRWfvVKdSfL~yv~d~~~~~------------~~~v~l~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~-~ 312 (952)
..++|.|.|=|.-|+|.+ +...+ ....|-++. +.+.. .....+.+|+|.|.+. +
T Consensus 19 ~~q~R~~FLFd~~Li~CK-~~~~~~~~~g~~~~~y~~k~~~~l~~-----------~~V~d-~~d~~~~knaF~I~~~~~ 85 (112)
T cd01261 19 AKHERHVFLFDGLMVLCK-SNHGQPRLPGASSAEYRLKEKFFMRK-----------VDIND-KPDSSEYKNAFEIILKDG 85 (112)
T ss_pred CcceEEEEEecCeEEEEE-eccCcccccccccceEEEEEEEeeee-----------eEEEE-cCCCcccCceEEEEcCCC
Confidence 466899999999999987 33221 112222221 22111 1112236899999985 7
Q ss_pred eEEEEEecchhhHHHHHHHHHhcc
Q 002219 313 RSIRLRTRTGAKVRDWVAAINDAG 336 (952)
Q Consensus 313 r~l~l~~~s~~~~~~w~~~i~~~~ 336 (952)
+.+.+-|++..+-.+|++++....
T Consensus 86 ~s~~l~Akt~eeK~~Wm~~l~~~~ 109 (112)
T cd01261 86 NSVIFSAKNAEEKNNWMAALISVQ 109 (112)
T ss_pred CEEEEEECCHHHHHHHHHHHHHHh
Confidence 899999999999999999998754
No 170
>PLN00188 enhanced disease resistance protein (EDR2); Provisional
Probab=76.09 E-value=8.6 Score=47.85 Aligned_cols=82 Identities=12% Similarity=0.105 Sum_probs=54.8
Q ss_pred eEEEEEeCCeEEEEeC--CCCCCccEEEEEeCCCCCCCCCCCcccccccccccCCcceeEEEEeC---ceEEEEEecchh
Q 002219 249 KVWAVLKPGFLALLAD--PFDTKPMDIIVFDVLPASDGNGEGRVSLATEVKERNPLRHAFKVTCG---VRSIRLRTRTGA 323 (952)
Q Consensus 249 kRWfvVKdSfL~yv~d--~~~~~~~~v~l~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~---~r~l~l~~~s~~ 323 (952)
+|+||++..++.|+++ .....|..=.++|..-..+. .|.++. ....=|-|+|-|. ++++++-|.+..
T Consensus 25 ~Ry~vl~~~~~~~yK~~P~~~~~pirs~~id~~~rVed-------~Gr~~~-~g~~~yvl~~Yn~~~~~~~~~~~a~~~e 96 (719)
T PLN00188 25 MRYFVLESRLLAYYKKKPQDNQVPIKTLLIDGNCRVED-------RGLKTH-HGHMVYVLSVYNKKEKYHRITMAAFNIQ 96 (719)
T ss_pred eEEEEEecchhhhcccCCccccccceeeccCCCceEee-------cCceEE-cCceEEEEEEecCCCccccEEEecCCHH
Confidence 7999999999999987 23345556666775322211 111100 0012245666655 679999999999
Q ss_pred hHHHHHHHHHhccCC
Q 002219 324 KVRDWVAAINDAGLR 338 (952)
Q Consensus 324 ~~~~w~~~i~~~~~~ 338 (952)
.+..|+.+++++..+
T Consensus 97 ea~~W~~a~~~a~~q 111 (719)
T PLN00188 97 EALIWKEKIESVIDQ 111 (719)
T ss_pred HHHHHHHHHHHHHhh
Confidence 999999999998753
No 171
>KOG3723 consensus PH domain protein Melted [Signal transduction mechanisms]
Probab=75.80 E-value=2 Score=51.36 Aligned_cols=108 Identities=18% Similarity=0.253 Sum_probs=68.6
Q ss_pred CCCCCCCCcceeEEEeeecCCccCCCCCCcccccCCCccccCCcceEEEEEeCCeEEEEeCCCCCCccEEEEEeCCCCCC
Q 002219 204 FSPEYGPKLKEDYVMAKHLPKISRNDDSRKCCCCPLFTCCNDNWQKVWAVLKPGFLALLADPFDTKPMDIIVFDVLPASD 283 (952)
Q Consensus 204 f~~~~G~KgKEG~l~kr~~~~~~G~~~~~~~~~~~~~~~~~~rw~kRWfvVKdSfL~yv~d~~~~~~~~v~l~D~~~~~~ 283 (952)
|..+.|-...||-|+-++ | .| +. ..||+.|||-+..--|.|-+. .++.-++---+|..
T Consensus 728 Fvn~~gqp~iEGQLKEKK-----G-rW-------Rf----~kRW~TrYFTLSgA~L~~~kg-~s~~dS~~~~IDl~---- 785 (851)
T KOG3723|consen 728 FVNQDGQPLIEGQLKEKK-----G-RW-------RF----IKRWKTRYFTLSGAQLLFQKG-KSKDDSDDCPIDLS---- 785 (851)
T ss_pred eecCCCCchhcchhhhhc-----c-ch-------hh----hhhhccceEEecchhhhcccC-CCCCCCCCCCccHH----
Confidence 555667778899876443 2 11 11 269999999999999998542 22222211112211
Q ss_pred CCCCCcc-cccccccccCCcceeEEEEeCceEEEEEecchhhHHHHHHHHHhcc
Q 002219 284 GNGEGRV-SLATEVKERNPLRHAFKVTCGVRSIRLRTRTGAKVRDWVAAINDAG 336 (952)
Q Consensus 284 ~~~~~~~-~~~~~~~~~~~~~~~~~i~~~~r~l~l~~~s~~~~~~w~~~i~~~~ 336 (952)
.--.+ .+++. +.+...+..|.|.....+++||+++++.+.+|.+.++-+.
T Consensus 786 --~IRSVk~v~~k-r~~rslpKAFEIFTAD~T~ILKaKDeKNAEEWlqCL~Iav 836 (851)
T KOG3723|consen 786 --KIRSVKAVAKK-RRDRSLPKAFEIFTADKTYILKAKDEKNAEEWLQCLNIAV 836 (851)
T ss_pred --HhhhHHHHHhh-hhhcccchhhheeecCceEEeecccccCHHHHHHHHHHHH
Confidence 00011 13321 1223456789999999999999999999999999887654
No 172
>KOG3751 consensus Growth factor receptor-bound proteins (GRB7, GRB10, GRB14) [Signal transduction mechanisms]
Probab=74.00 E-value=4.6 Score=48.05 Aligned_cols=99 Identities=15% Similarity=0.204 Sum_probs=61.6
Q ss_pred cceeEEEeeecCCccCCCCCCcccccCCCccccCCcceEEEEEeCCeEEEEeCCCCCCccEEEEEeCCCCCCCCCCCccc
Q 002219 212 LKEDYVMAKHLPKISRNDDSRKCCCCPLFTCCNDNWQKVWAVLKPGFLALLADPFDTKPMDIIVFDVLPASDGNGEGRVS 291 (952)
Q Consensus 212 gKEG~l~kr~~~~~~G~~~~~~~~~~~~~~~~~~rw~kRWfvVKdSfL~yv~d~~~~~~~~v~l~D~~~~~~~~~~~~~~ 291 (952)
-.+|||..|. .| ...|+|-+||+|.|-|.|.-.--+..+++.-.+-- |. +.+|.
T Consensus 318 ei~GfL~~K~----dg----------------kKsWKk~yf~LR~SGLYys~K~tsk~~r~Lq~l~~-~~-----~snVY 371 (622)
T KOG3751|consen 318 EIQGFLYLKE----DG----------------KKSWKKHYFVLRRSGLYYSTKGTSKEPRHLQCLAD-LH-----SSNVY 371 (622)
T ss_pred cccceeeecc----cc----------------cccceeEEEEEecCcceEccCCCCCCchhhHHHHh-cc-----cCceE
Confidence 3689998774 22 05799999999999999984333444666543321 11 12232
Q ss_pred c--cccccccCCcceeEEEE-----eCceEEEEEecc-hhhHHHHHHHHHhcc
Q 002219 292 L--ATEVKERNPLRHAFKVT-----CGVRSIRLRTRT-GAKVRDWVAAINDAG 336 (952)
Q Consensus 292 ~--~~~~~~~~~~~~~~~i~-----~~~r~l~l~~~s-~~~~~~w~~~i~~~~ 336 (952)
. |-..|-..++.|||.|. +..|.|++.|.- +.....|..+|+-..
T Consensus 372 t~i~~rKkyksPTd~~f~~K~~~~~~~~r~lk~lCAEDe~t~~~WltAiRl~K 424 (622)
T KOG3751|consen 372 TGIGGRKKYKSPTDYGFCIKPNKLRNKRRFLKMLCAEDEQTRTCWLTAIRLLK 424 (622)
T ss_pred EeecchhccCCCCCceEEeeeccccCcccceeeeecccchhHHHHHHHHHHHH
Confidence 2 21122345677888663 456889998865 455578998887653
No 173
>PF06087 Tyr-DNA_phospho: Tyrosyl-DNA phosphodiesterase; InterPro: IPR010347 Covalent intermediates between topoisomerase I and DNA can become dead-end complexes that lead to cell death. Tyrosyl-DNA phosphodiesterase can hydrolyse the bond between topoisomerase I and DNA [].; GO: 0008081 phosphoric diester hydrolase activity, 0006281 DNA repair, 0005634 nucleus; PDB: 3SQ8_A 3SQ5_B 3SQ3_A 1Q32_D 3SQ7_A 1QZQ_A 1RGU_B 1RG2_B 1MU9_B 1RFI_B ....
Probab=71.85 E-value=2.5 Score=50.14 Aligned_cols=46 Identities=22% Similarity=0.217 Sum_probs=30.8
Q ss_pred ccceeeeeEEEEeC-------cEEEEecccCCcCccCCC----------CCcceEEEEEchhhH
Q 002219 897 SQVYVHSKVMIIDD-------SIALIGSANINDRSLLGS----------RDSEVSVGLYLFILR 943 (952)
Q Consensus 897 e~iyvHSKlmIVDD-------~~~iIGSANin~RSm~G~----------rDsEi~v~i~d~~~~ 943 (952)
..+..|+|+++... .|+++|||||-.-.+ |. +|+|++|++......
T Consensus 345 ~~~~pH~K~y~~~~~~~~~~~~W~~lgShNLS~aAW-G~~~~~~~~l~i~nyElGVl~~P~~~~ 407 (443)
T PF06087_consen 345 SRAPPHIKTYMRFSKNDFKSLGWFYLGSHNLSKAAW-GKRSKNGSQLSIRNYELGVLFLPSSFG 407 (443)
T ss_dssp TTS-B--EEEEEEE-TTTSEECEEEEES--BSHHHH--EEETTTTCCEESSBEEEEEEEGGGCT
T ss_pred CCcCcceEEEEEecCCCCCccceEEeCcccCCHHHh-cccccCCceeeecceEEEEEEecCccc
Confidence 35789999999886 699999999965544 44 999999999544433
No 174
>cd01249 PH_oligophrenin Oligophrenin Pleckstrin homology (PH) domain. Oligophrenin Pleckstrin homology (PH) domain. Oligophrenin is composed of a PH domain, a rhoGAP domain and a proline rich region. Closely related proteins have a C-terminal SH3 domain. PH domains a share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains. PH domains are found in cellular signaling proteins such as serine/threonine kinase, tyrosine kinsases, regulators of G-proteins, endocytotic GTPases, adaptors, as well as cytoskeletal associated molecules and in lipid associated enzymes.
Probab=70.13 E-value=39 Score=32.59 Aligned_cols=34 Identities=21% Similarity=0.390 Sum_probs=29.0
Q ss_pred CCcceeEEEEeCce--EEEEEecchhhHHHHHHHHH
Q 002219 300 NPLRHAFKVTCGVR--SIRLRTRTGAKVRDWVAAIN 333 (952)
Q Consensus 300 ~~~~~~~~i~~~~r--~l~l~~~s~~~~~~w~~~i~ 333 (952)
.+.++=|.|....+ .+.|.+.|......|.+++.
T Consensus 67 ~dRRFCFei~~~~~~~~~~lQA~Se~~~~~Wi~A~d 102 (104)
T cd01249 67 IDKRFCFDVEVEEKPGVITMQALSEKDRRLWIEAMD 102 (104)
T ss_pred ccceeeEeeeecCCCCeEEEEecCHHHHHHHHHhhc
Confidence 34578888977777 89999999999999999875
No 175
>KOG2101 consensus Intermediate filament-like protein, sorting nexins, and related proteins containing PX (PhoX) domain(s) [Cytoskeleton; Intracellular trafficking, secretion, and vesicular transport; Cell cycle control, cell division, chromosome partitioning]
Probab=68.47 E-value=6.2 Score=45.40 Aligned_cols=36 Identities=25% Similarity=0.265 Sum_probs=31.6
Q ss_pred CcceeEEEEEEEecceE-----EEEEEehhhHHHHHHHHHH
Q 002219 60 SPMLLSYTIEVQYKQFK-----WKLVKKASQVFYLHFALKR 95 (952)
Q Consensus 60 ~~~~~~Y~Iel~~g~~~-----W~v~r~~~~f~~Lh~~lk~ 95 (952)
.+.+++|.+.+....-+ |+|.|+|++|..||.+|++
T Consensus 132 ~~~~~vy~~~v~~~~~~~~~~~~~V~rRysdf~~l~~~Lk~ 172 (362)
T KOG2101|consen 132 SKSFTVYKVTVSVSSRREDLSTAVVSRRYSDFSRLHRRLKR 172 (362)
T ss_pred ccceeEEEEEEEecCCCccCcCceeeechhHHHHHHHHHHH
Confidence 34588999999987777 9999999999999999984
No 176
>COG3886 Predicted HKD family nuclease [DNA replication, recombination, and repair]
Probab=65.55 E-value=37 Score=36.02 Aligned_cols=122 Identities=25% Similarity=0.305 Sum_probs=67.2
Q ss_pred HHHHHHHHHHHHhccCeEEEEeeeeccCCCCChhHHHHHHHHHHHHHHHHHHcCCceEEEEEecCCCCCCCCCCCCCchh
Q 002219 763 ESIHCAYCSLIEKAEHFIYIENQFFISGLSGDEIIRNRVLESLYRRILRAYNEKKCFRVIIVIPLLPGFQGGVDDGGAAS 842 (952)
Q Consensus 763 ~sI~~ayl~~I~~A~~~IYIEnqyFis~~~~~~~v~n~I~~AL~~RI~~A~~~g~~vrV~IvlPl~pgf~g~~~d~~~~~ 842 (952)
+-|....+..|+.|+.|..+-. ||+.. |-. -+.++| +.+..+| +++.|++.-.-+ +.|+
T Consensus 38 e~il~~Li~~l~k~~ef~IsVa--Fit~s-G~s----ll~~~L----~d~~~Kg--vkgkilts~Yln----fTdP---- 96 (198)
T COG3886 38 EKILPRLIDELEKADEFEISVA--FITES-GLS----LLFDLL----LDLVNKG--VKGKILTSDYLN----FTDP---- 96 (198)
T ss_pred hhHHHHHHHHHhcCCeEEEEEE--EeeCc-cHH----HHHHHH----HHHhcCC--ceEEEecccccC----ccCH----
Confidence 5899999999999999988884 78874 211 233333 3666666 555555663322 2222
Q ss_pred HHHHHHHHHHHHHhhHHHHHHHHHHhcCCCcccccccccccccccccCCCCcccccceeeeeEEEEeCcEEEEecccCCc
Q 002219 843 VRAIMHWQYRTICRGQNSILHNLYALLGPKTHDYISFYGLRAYGRLFEDGPVATSQVYVHSKVMIIDDSIALIGSANIND 922 (952)
Q Consensus 843 ~r~i~~~qy~ti~rg~~si~~~L~~~~Gv~~~~Yi~f~~lr~~~~~~~~g~~~te~iyvHSKlmIVDD~~~iIGSANin~ 922 (952)
. .+.+|+..-.++ ..++-.+-+++. .+| .++.|-.. . .++|||.|+.+
T Consensus 97 ---~--------------al~~Ll~~~nve--~r~~~~~~~~fH---~Kg-----YiFe~~~~--~---taiiGSsNlt~ 144 (198)
T COG3886 97 ---V--------------ALRKLLMLKNVE--LRVSTIGSANFH---TKG-----YIFEHNTG--I---TAIIGSSNLTD 144 (198)
T ss_pred ---H--------------HHHHHHhhhccc--eEEEecCccccc---cce-----eEEEecce--E---EEEEccchhhh
Confidence 1 133344322222 222222112110 010 12233222 2 39999999998
Q ss_pred CccCCCCCcceEEEEEc
Q 002219 923 RSLLGSRDSEVSVGLYL 939 (952)
Q Consensus 923 RSm~G~rDsEi~v~i~d 939 (952)
--+ .-+.|=++.+..
T Consensus 145 sAL--t~n~Ewn~k~s~ 159 (198)
T COG3886 145 SAL--TVNEEWNLKVSS 159 (198)
T ss_pred hhc--ccCHHHHhhhcc
Confidence 888 778887777653
No 177
>PF12814 Mcp5_PH: Meiotic cell cortex C-terminal pleckstrin homology; InterPro: IPR024774 This pleckstrin homology domain is found in eukaryotic proteins, including Mcp5, a fungal protein that anchors dynein at the cell cortex during the horsetail phase (prophase I) of meiosis. During prophase I of fission yeast all the telomeres become bundled at the spindle pole body and subsequently the nucleus undergoes a dynamic oscillation, resulting in elongated nuclear morphology known as "horsetail" nucleus. The pleckstrin homology domain is necessary for the cortical localisation of the Mcp5 protein during meiosis [].; GO: 0005515 protein binding, 0032065 cortical protein anchoring, 0005938 cell cortex
Probab=65.46 E-value=46 Score=32.59 Aligned_cols=35 Identities=14% Similarity=0.182 Sum_probs=31.7
Q ss_pred cceeEEEEeCceEEEEEecchhhHHHHHHHHHhcc
Q 002219 302 LRHAFKVTCGVRSIRLRTRTGAKVRDWVAAINDAG 336 (952)
Q Consensus 302 ~~~~~~i~~~~r~l~l~~~s~~~~~~w~~~i~~~~ 336 (952)
..++|.|.++.|.|.|.|.+.....-|+.+|....
T Consensus 87 ~~~si~i~t~~R~L~l~a~s~~~~~~W~~aL~~L~ 121 (123)
T PF12814_consen 87 HNKSIIIVTPDRSLDLTAPSRERHEIWFNALRYLL 121 (123)
T ss_pred cceEEEEEcCCeEEEEEeCCHHHHHHHHHHHHHHh
Confidence 56889999999999999999999999999998643
No 178
>cd01222 PH_clg Clg (common-site lymphoma/leukemia guanine nucleotide exchange factor) pleckstrin homology (PH) domain. Clg (common-site lymphoma/leukemia guanine nucleotide exchange factor) pleckstrin homology (PH) domain. Clg contains a RhoGEF (DH) domain and a PH domain. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains. PH domains are found in cellular signaling proteins such as serine/threonine kinase, tyrosine kinsases, regulators of G-proteins, endocytotic GTPases, adaptors, a well as cytoskeletal associated molecules and in lipid associated enzymes.
Probab=62.18 E-value=33 Score=32.47 Aligned_cols=34 Identities=21% Similarity=0.280 Sum_probs=28.6
Q ss_pred ceeEEEEeCc---eEEEEEecchhhHHHHHHHHHhcc
Q 002219 303 RHAFKVTCGV---RSIRLRTRTGAKVRDWVAAINDAG 336 (952)
Q Consensus 303 ~~~~~i~~~~---r~l~l~~~s~~~~~~w~~~i~~~~ 336 (952)
.++|.|.... +++.+.|+|...-+.|.++|..+.
T Consensus 59 ~~~F~v~~~~~p~~~~~l~A~s~e~K~~W~~~i~~~i 95 (97)
T cd01222 59 PLCFRVIPFDDPKGALQLTARNREEKRIWTQQLKRAM 95 (97)
T ss_pred CcEEEEEecCCCceEEEEEecCHHHHHHHHHHHHHHh
Confidence 5788875543 799999999999999999998764
No 179
>KOG2528 consensus Sorting nexin SNX9/SH3PX1 and related proteins [Intracellular trafficking, secretion, and vesicular transport]
Probab=60.57 E-value=15 Score=43.22 Aligned_cols=87 Identities=14% Similarity=0.259 Sum_probs=59.8
Q ss_pred eeEEEEEEEecceEEEEEEehhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCccccccCcccccccccccccc
Q 002219 63 LLSYTIEVQYKQFKWKLVKKASQVFYLHFALKRRAFFEEIQEKQEQVKEWLQNLGMGDHMAVVQEDDEGDEIAVNHDESS 142 (952)
Q Consensus 63 ~~~Y~Iel~~g~~~W~v~r~~~~f~~Lh~~lk~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 142 (952)
+..|.+--++-+.. |.|+||||.-||.+|..+ +..+++++
T Consensus 205 ~i~y~ltpt~t~~~--v~rrykhfdwl~~rl~~k----------------f~~i~vp~---------------------- 244 (490)
T KOG2528|consen 205 YIAYQLTPTHTNIS--VSRRYKHFDWLYERLLLK----------------FPLIPVPP---------------------- 244 (490)
T ss_pred eeEeeecccccCcc--hhhcccccHHHHHHHHhh----------------cccccCCC----------------------
Confidence 55777777777764 999999999999987630 12233322
Q ss_pred ccCCCCCCCCCCCCCCcccc-CCCcchHHHHHHHHHHHHHHhccccccchhhhheeeec
Q 002219 143 KKRDVPANAALPVIRPALGR-QHSMSDRAKVAMQQYLNHFLGNMDIVNSREVCKFLEAS 200 (952)
Q Consensus 143 ~~~~~p~~~~lp~~~~~~~~-~~~~~~r~~~~LE~YL~~lL~~~~~~n~~~l~~FlevS 200 (952)
||.- -..+| ++.+-+.+|+.|+-+.+++.+.+.+.+++-.+.||-.-
T Consensus 245 ----------Lpdk-q~~gr~Ee~fi~~rr~~l~~wm~~~~~hpvlsq~evf~hFl~c~ 292 (490)
T KOG2528|consen 245 ----------LPDK-QVTGRFEEDFIEKRRKGLQWWMNHMCRHPVLSQCEVFQHFLTCP 292 (490)
T ss_pred ----------CCcc-ccccchhHHHHHHHHHHHHHHHHHhhcchHhhhhHHHHHHHcCC
Confidence 3321 12233 33444455679999999999999999988888887553
No 180
>KOG3964 consensus Phosphatidylglycerolphosphate synthase [Lipid transport and metabolism]
Probab=60.52 E-value=26 Score=40.86 Aligned_cols=148 Identities=18% Similarity=0.185 Sum_probs=81.1
Q ss_pred HHHHHHHHHHHhccCeEEEEeeeeccCCCCChhHHHHHHHHHHHHHHHHHHcCCceEEEEEecCCCCCCCCCCCCCchhH
Q 002219 764 SIHCAYCSLIEKAEHFIYIENQFFISGLSGDEIIRNRVLESLYRRILRAYNEKKCFRVIIVIPLLPGFQGGVDDGGAASV 843 (952)
Q Consensus 764 sI~~ayl~~I~~A~~~IYIEnqyFis~~~~~~~v~n~I~~AL~~RI~~A~~~g~~vrV~IvlPl~pgf~g~~~d~~~~~~ 843 (952)
..++...+.|.+||+.|+|.+-|.-. .++++.+-| -.|...++.++|-|++.-.-|-.|- + .+.
T Consensus 39 ~fy~~lk~~I~~aq~Ri~lasLYlG~-------~E~elv~cl----~~aL~~~~~L~v~iLlD~~rgtr~~---~--~~~ 102 (469)
T KOG3964|consen 39 EFYQRLKKLIKKAQRRIFLASLYLGK-------LERELVDCL----SNALEKNPSLKVSILLDFLRGTREL---P--NSC 102 (469)
T ss_pred HHHHHHHHHHHHhhheeeeeeeccch-------hHHHHHHHH----HHHhccCCCcEEEeehhhhhhcccC---c--ccc
Confidence 67888999999999999999988632 234555555 4888899999999988744331111 1 111
Q ss_pred HHHH-HHHHHHHHhhHHHHHHHHHHhcCCCcccccccccccccccccCCCCcccccceeeeeEEEEeCcEEEEecccCCc
Q 002219 844 RAIM-HWQYRTICRGQNSILHNLYALLGPKTHDYISFYGLRAYGRLFEDGPVATSQVYVHSKVMIIDDSIALIGSANIND 922 (952)
Q Consensus 844 r~i~-~~qy~ti~rg~~si~~~L~~~~Gv~~~~Yi~f~~lr~~~~~~~~g~~~te~iyvHSKlmIVDD~~~iIGSANin~ 922 (952)
++.+ -|- ....+.+ ++..-|-. -.||.+.+..--.....-.+.=|.|+.-+||+ +||-.||+-+
T Consensus 103 s~llp~~l----------~kkf~e~---vd~~lyht-p~Lrg~~k~Lvp~rfneg~GlQhmKIy~fdde-viiSGanls~ 167 (469)
T KOG3964|consen 103 SALLPVWL----------GKKFPER---VDESLYHT-PFLRGLSKSLVPARFNEGLGLQHMKIYGFDDE-VIISGANLSN 167 (469)
T ss_pred hhhchHHH----------hhhhhhh---hceeeecC-hhhhhhhhhcCchhhccccchhhhhhhcccHh-hhcccccchh
Confidence 1111 110 0111111 23222211 12333322100000111145789999999997 6777899866
Q ss_pred CccCCCCCcceEEEEEchhhHH
Q 002219 923 RSLLGSRDSEVSVGLYLFILRW 944 (952)
Q Consensus 923 RSm~G~rDsEi~v~i~d~~~~~ 944 (952)
=-+. +| .-=-.++.|..++.
T Consensus 168 dyfT-NR-qdry~L~sdr~~ad 187 (469)
T KOG3964|consen 168 DYFT-NR-QDRYYLFSDRRLAD 187 (469)
T ss_pred hhhc-cc-cceeEEEecccHHH
Confidence 5552 12 33334555555444
No 181
>cd01232 PH_TRIO Trio pleckstrin homology (PH) domain. Trio pleckstrin homology (PH) domain. Trio is a multidomain signaling protein that contains two RhoGEF(DH)-PH domains in tandem. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains.
Probab=53.05 E-value=75 Score=31.02 Aligned_cols=35 Identities=23% Similarity=0.366 Sum_probs=26.6
Q ss_pred CcceeEEEEeCc---eEEEEEecchhhHHHHHHHHHhc
Q 002219 301 PLRHAFKVTCGV---RSIRLRTRTGAKVRDWVAAINDA 335 (952)
Q Consensus 301 ~~~~~~~i~~~~---r~l~l~~~s~~~~~~w~~~i~~~ 335 (952)
+.++.+.+.... .+.++.+.|...-..|...|.+.
T Consensus 74 ~~kF~i~~~~~~~~~~~~ilqA~s~e~K~~W~~~I~~i 111 (114)
T cd01232 74 PCRFALWSGDPPISDNRIILKANSQETKQEWVKKIREI 111 (114)
T ss_pred CceEEEEeCCCCCCceEEEEECCCHHHHHHHHHHHHHH
Confidence 345555544443 58899999999999999999875
No 182
>KOG1090 consensus Predicted dual-specificity phosphatase [General function prediction only]
Probab=50.47 E-value=9 Score=48.70 Aligned_cols=79 Identities=25% Similarity=0.396 Sum_probs=50.4
Q ss_pred CCcceEEEEEeCC--eEEEEeCCCCCCccEEE-EEeCCCCCCCCCCCcccccccccccCCccee-EEEEeCceEEEEEec
Q 002219 245 DNWQKVWAVLKPG--FLALLADPFDTKPMDII-VFDVLPASDGNGEGRVSLATEVKERNPLRHA-FKVTCGVRSIRLRTR 320 (952)
Q Consensus 245 ~rw~kRWfvVKdS--fL~yv~d~~~~~~~~v~-l~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~i~~~~r~l~l~~~ 320 (952)
..|..||||+-.. =|-|+++-+++++..++ |.|.. .+..+. ..+....| |.+....|...+-+.
T Consensus 1648 K~Wk~RwFVLd~~khqlrYYd~~edt~pkG~IdLaeve---------sv~~~~---~k~vdekgffdlktt~rvynf~a~ 1715 (1732)
T KOG1090|consen 1648 KLWKPRWFVLDPDKHQLRYYDDFEDTKPKGCIDLAEVE---------SVALIG---PKTVDEKGFFDLKTTNRVYNFCAQ 1715 (1732)
T ss_pred cccccceeEecCCccceeeecccccccccchhhhhhhh---------hhcccC---ccccCccceeeeehhhHHHHHHhc
Confidence 4699999998543 36777777888888776 33321 011100 01111223 566666777778888
Q ss_pred chhhHHHHHHHHHhc
Q 002219 321 TGAKVRDWVAAINDA 335 (952)
Q Consensus 321 s~~~~~~w~~~i~~~ 335 (952)
+--.+++|...|+..
T Consensus 1716 nin~AqqWve~iqsc 1730 (1732)
T KOG1090|consen 1716 NINLAQQWVECIQSC 1730 (1732)
T ss_pred cchHHHHHHHHHHHh
Confidence 888999999998764
No 183
>KOG4424 consensus Predicted Rho/Rac guanine nucleotide exchange factor/faciogenital dysplasia protein 3 [Signal transduction mechanisms]
Probab=45.46 E-value=62 Score=39.52 Aligned_cols=35 Identities=40% Similarity=0.639 Sum_probs=30.7
Q ss_pred cceeEEEEeCceEEEEEecchhhHHHHHHHHHhcc
Q 002219 302 LRHAFKVTCGVRSIRLRTRTGAKVRDWVAAINDAG 336 (952)
Q Consensus 302 ~~~~~~i~~~~r~l~l~~~s~~~~~~w~~~i~~~~ 336 (952)
..|.|.+.-..|.+.|.+.+....++|.++|..+.
T Consensus 335 ~~~tF~~~G~~r~vel~a~t~~ek~eWv~~I~~~I 369 (623)
T KOG4424|consen 335 LPHTFILTGKKRGVELQARTEQEKKEWVQAIQDAI 369 (623)
T ss_pred CCceEEEecccceEEeecCchhhHHHHHHHHHHHH
Confidence 45778887669999999999999999999998865
No 184
>cd01240 PH_beta-ARK Beta adrenergic receptor kinase 1(beta ARK1)(GRK2) pleckstrin homology (PH) domain. Beta adrenergic receptor kinase 1(beta ARK1)(GRK2) pleckstrin homology (PH) domain. Beta ARK1 is a G protein-coupled receptor kinase (GRK). It phosphorylates activated G-protein coupled receptors leading to the release of the previously bound heterotrimeric G protein agonist and thus signal termination. It consists of a domain found in regulators of G-protein signaling (RGS)(RH), a serine/threonine kinase domain and a C-terminal PH domain. The Beta-Ark 1 PH domain has an extended C-terminal helix, which mediates interactions with G beta gamma subunits. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or
Probab=43.73 E-value=25 Score=34.16 Aligned_cols=79 Identities=23% Similarity=0.351 Sum_probs=49.7
Q ss_pred CCcceEEEEEeCCeEEEEeCCCCCC-ccEEEEEeCCCCCCCCCCCcccccccccccCCcceeEEEEeCceEEEEEecchh
Q 002219 245 DNWQKVWAVLKPGFLALLADPFDTK-PMDIIVFDVLPASDGNGEGRVSLATEVKERNPLRHAFKVTCGVRSIRLRTRTGA 323 (952)
Q Consensus 245 ~rw~kRWfvVKdSfL~yv~d~~~~~-~~~v~l~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~r~l~l~~~s~~ 323 (952)
..|++|+|-+=+.=|-.. ..+++ --+++.||.--.+.. ++ ..+|..+ =--++|.+ ..+++|.|.++-
T Consensus 18 s~WQ~Ry~~LfPNRLE~~--~~~~~~~~eLi~M~~i~~V~~--e~-----~~iK~~~--CI~ik~k~-~~k~vlt~~d~i 85 (116)
T cd01240 18 SQWQTRYFKLYPNRLELY--GESEANKPELITMDQIEDVSV--EF-----QQIKEEN--CILLKIRD-EKKIVLTNSDEI 85 (116)
T ss_pred HHHHHHHheeCcceeeec--ccccccCCcEEEeehhhhcch--hh-----eeeccCc--eEEEEEcC-CceEEEecCCcH
Confidence 579999999988888874 34333 455666765321110 00 0111111 12344444 788999999999
Q ss_pred hHHHHHHHHHhc
Q 002219 324 KVRDWVAAINDA 335 (952)
Q Consensus 324 ~~~~w~~~i~~~ 335 (952)
.+.+|..+|.++
T Consensus 86 ~l~qW~~elr~a 97 (116)
T cd01240 86 ELKQWKKELRDA 97 (116)
T ss_pred HHHHHHHHHHHH
Confidence 999999999875
No 185
>KOG0521 consensus Putative GTPase activating proteins (GAPs) [Signal transduction mechanisms]
Probab=38.50 E-value=28 Score=44.44 Aligned_cols=80 Identities=19% Similarity=0.434 Sum_probs=57.2
Q ss_pred CCcceEEEEEeCCeEEEEeCCCCCCccEEEEEeCCCCCCCCCCCcccccccccccCCcceeEEEEeCceEEEEEecchhh
Q 002219 245 DNWQKVWAVLKPGFLALLADPFDTKPMDIIVFDVLPASDGNGEGRVSLATEVKERNPLRHAFKVTCGVRSIRLRTRTGAK 324 (952)
Q Consensus 245 ~rw~kRWfvVKdSfL~yv~d~~~~~~~~v~l~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~r~l~l~~~s~~~ 324 (952)
..|.|+||-+++++++|..+-.+-.. ++..|..+ . .+. ...+.+..++=|.|.++++...+.+.|+..
T Consensus 289 ~tw~r~~f~~q~~~l~~~~r~~~~~~--~~~~dL~~-c------svk---~~~~~~drr~CF~iiS~tks~~lQAes~~d 356 (785)
T KOG0521|consen 289 KTWKRRWFSIQDGQLGYQHRGADAEN--VLIEDLRT-C------SVK---PDAEQRDRRFCFEIISPTKSYLLQAESEKD 356 (785)
T ss_pred hhHHhhhhhhhccccccccccccccc--cccccchh-c------ccc---CCcccccceeeEEEecCCcceEEecCchhH
Confidence 35889999999999999865333222 44444322 1 111 112234568899999999999999999999
Q ss_pred HHHHHHHHHhcc
Q 002219 325 VRDWVAAINDAG 336 (952)
Q Consensus 325 ~~~w~~~i~~~~ 336 (952)
...|+..|....
T Consensus 357 ~~~Wi~~i~nsi 368 (785)
T KOG0521|consen 357 CQDWISALQNSI 368 (785)
T ss_pred HHHHHHHHHHHH
Confidence 999998887654
No 186
>cd05394 RasGAP_RASA2 RASA2 (or GAP1(m)) is a member of the GAP1 family of Ras GTPase-activating proteins that includes GAP1_IP4BP (or RASA3), CAPRI, and RASAL. In vitro, RASA2 has been shown to bind inositol 1,3,4,5-tetrakisphosphate (IP4), the water soluble inositol head group of the lipid second messenger phosphatidylinositol 3,4,5-trisphosphate (PIP3). In vivo studies also demonstrated that RASA2 binds PIP3, and it is recruited to the plasma membrane following agonist stimulation of PI 3-kinase. Furthermore, the membrane translocation is a consequence of the ability of its pleckstrin homology (PH) domain to bind PIP3.
Probab=38.08 E-value=9.5 Score=43.36 Aligned_cols=50 Identities=26% Similarity=0.385 Sum_probs=30.4
Q ss_pred hhhhheee-eccCCCCCCCC----CCcceeEEEeeecCCccCCCCCCcccccCCCccccCCcceEEEEEe
Q 002219 191 REVCKFLE-ASKLSFSPEYG----PKLKEDYVMAKHLPKISRNDDSRKCCCCPLFTCCNDNWQKVWAVLK 255 (952)
Q Consensus 191 ~~l~~Fle-vS~~sf~~~~G----~KgKEG~l~kr~~~~~~G~~~~~~~~~~~~~~~~~~rw~kRWfvVK 255 (952)
.++..||+ ||........| ...|||++.||. +| +. . ++...|+||||.+.
T Consensus 258 ~~v~~FLd~Is~~~~~~~~~~~~~~~~~e~~~~~r~----~~--~~-~--------~~~~~~kkr~~~l~ 312 (313)
T cd05394 258 KVVKKFLDEISSTETKEPSGVSEPVHLKEGEMYKRA----QG--RT-R--------IGKKNFKKRWFCLT 312 (313)
T ss_pred HHHHHHHHHHcCCCCCCCCCCCCchhhHHHHHHhhc----cC--CC-c--------cccccchhheeecC
Confidence 35777874 56665443433 357999998874 23 10 1 12246889999874
No 187
>cd01227 PH_Dbs Dbs (DBL's big sister) pleckstrin homology (PH) domain. Dbs (DBL's big sister) pleckstrin homology (PH) domain. Dbs is a guanine nucleotide exchange factor (GEF), which contains spectrin repeats, a rhoGEF (DH) domain and a PH domain. The Dbs PH domain participates in binding to both the Cdc42 and RhoA GTPases. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains.
Probab=37.65 E-value=1.5e+02 Score=29.72 Aligned_cols=28 Identities=18% Similarity=0.164 Sum_probs=22.7
Q ss_pred EeCceEEEEEecchhhHHHHHHHHHhcc
Q 002219 309 TCGVRSIRLRTRTGAKVRDWVAAINDAG 336 (952)
Q Consensus 309 ~~~~r~l~l~~~s~~~~~~w~~~i~~~~ 336 (952)
..+...+++.|.|...-..|...|.+..
T Consensus 88 ~~~~~~yilqA~t~e~K~~Wv~~I~~iL 115 (133)
T cd01227 88 NAREEVYILQAPTPEIKAAWVNEIRKVL 115 (133)
T ss_pred CCCCcEEEEEcCCHHHHHHHHHHHHHHH
Confidence 3345688999999999999999998754
No 188
>PF08458 PH_2: Plant pleckstrin homology-like region; InterPro: IPR013666 This domain describes a pleckstrin homology (PH)-like region found in several plant proteins of unknown function.
Probab=34.73 E-value=74 Score=31.00 Aligned_cols=35 Identities=14% Similarity=0.287 Sum_probs=30.7
Q ss_pred cceeEEEEeCceEEEEEecchhhHHHHHHHHHhcc
Q 002219 302 LRHAFKVTCGVRSIRLRTRTGAKVRDWVAAINDAG 336 (952)
Q Consensus 302 ~~~~~~i~~~~r~l~l~~~s~~~~~~w~~~i~~~~ 336 (952)
..+-|-|.+..+.+.|+|.|.++.+.|.+.|+.+-
T Consensus 69 ~~~yfgL~T~~G~vEfec~~~~~~k~W~~gI~~mL 103 (110)
T PF08458_consen 69 ERRYFGLKTAQGVVEFECDSQREYKRWVQGIQHML 103 (110)
T ss_pred eEEEEEEEecCcEEEEEeCChhhHHHHHHHHHHHH
Confidence 45668888889999999999999999999999864
No 189
>COG5391 Phox homology (PX) domain protein [Intracellular trafficking and secretion / General function prediction only]
Probab=29.39 E-value=74 Score=38.90 Aligned_cols=27 Identities=11% Similarity=0.238 Sum_probs=21.0
Q ss_pred CcchHHHHHHHHHHHHHHhccccccch
Q 002219 165 SMSDRAKVAMQQYLNHFLGNMDIVNSR 191 (952)
Q Consensus 165 ~~~~r~~~~LE~YL~~lL~~~~~~n~~ 191 (952)
.+..+++..|++||+.+...+.+.|+.
T Consensus 218 ~~i~~r~~~L~~~~~~~~~hp~lsn~~ 244 (524)
T COG5391 218 EFIEERRQSLQNFLRRVSTHPLLSNYK 244 (524)
T ss_pred HHHHHHHHHHHHHHHHHhcCccccccc
Confidence 345566679999999999888887764
No 190
>cd01262 PH_PDK1 3-Phosphoinositide dependent protein kinase 1 (PDK1) pleckstrin homology (PH) domain. 3-Phosphoinositide dependent protein kinase 1 (PDK1) pleckstrin homology (PH) domain. PDK1 contains an N-terminal serine/threonine kinase domain followed by a PH domain. Following binding of the PH domain to PtdIns(3,4,5)P3 and PtdIns(3,4)P2, PDK1 activates kinases such as Akt (PKB). PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains.
Probab=28.12 E-value=3.8e+02 Score=25.29 Aligned_cols=72 Identities=22% Similarity=0.258 Sum_probs=45.3
Q ss_pred cceEEEEEeCC-eEEEEeCCCCCCccEEEEEeCCCCCCCCCCCcccccccccccCCcceeEEEEeCceEEEEEecchhhH
Q 002219 247 WQKVWAVLKPG-FLALLADPFDTKPMDIIVFDVLPASDGNGEGRVSLATEVKERNPLRHAFKVTCGVRSIRLRTRTGAKV 325 (952)
Q Consensus 247 w~kRWfvVKdS-fL~yv~d~~~~~~~~v~l~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~r~l~l~~~s~~~~ 325 (952)
+++|=|++.|. =|.|+ ||.++.+..=+-+.+. +-.+. .. ...+|.|...+|...|.-. ...+
T Consensus 15 ~kkR~LiLTd~PrL~yv-dp~~~~~KgeIp~s~~-------~l~v~------~~--~~~~F~I~Tp~rty~leD~-~~~a 77 (89)
T cd01262 15 AKKRQLILTNGPRLIYV-DPVKKVVKGEIPWSDV-------ELRVE------VK--NSSHFFVHTPNKVYSFEDP-KGRA 77 (89)
T ss_pred cceeeEEEecCceEEEE-cCCcCeEEeEeccccc-------ceEEE------Ee--cCccEEEECCCceEEEECC-CCCH
Confidence 35778888775 35566 4776655544433320 00111 11 1267999999999999643 5788
Q ss_pred HHHHHHHHhc
Q 002219 326 RDWVAAINDA 335 (952)
Q Consensus 326 ~~w~~~i~~~ 335 (952)
.+|..+|+++
T Consensus 78 ~~W~~~I~~~ 87 (89)
T cd01262 78 SQWKKAIEDL 87 (89)
T ss_pred HHHHHHHHHH
Confidence 8999999875
No 191
>cd01224 PH_Collybistin Collybistin pleckstrin homology (PH) domain. Collybistin pleckstrin homology (PH) domain. Collybistin is GEF which induces submembrane clustering of the receptor-associated peripheral membrane protein gephyrin. It consists of an SH3 domain, followed by a RhoGEF(dbH) and PH domain. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains.
Probab=25.28 E-value=3.1e+02 Score=26.78 Aligned_cols=35 Identities=9% Similarity=0.274 Sum_probs=30.2
Q ss_pred CcceeEEEEeCc--eEEEEEecchhhHHHHHHHHHhc
Q 002219 301 PLRHAFKVTCGV--RSIRLRTRTGAKVRDWVAAINDA 335 (952)
Q Consensus 301 ~~~~~~~i~~~~--r~l~l~~~s~~~~~~w~~~i~~~ 335 (952)
..+++|+|.+.+ ..+.+-|++...-..|++++...
T Consensus 70 ~~knafkl~~~~~~~~~~f~~Kt~e~K~~Wm~a~~~e 106 (109)
T cd01224 70 TIKNSLKIYSESTDEWYLFSFKSAERKHRWLSAFALE 106 (109)
T ss_pred eeEEEEEEEEcCCCeEEEEEECCHHHHHHHHHHHHHh
Confidence 368999999887 56999999999999999998764
No 192
>cd05135 RasGAP_RASAL Ras GTPase activating-like protein (RASAL) or RASAL1 is a member of the GAP1 family, and a Ca2+ sensor responding in-phase to repetitive Ca2+ signals by associating with the plasma membrane and deactivating Ras. It contains a conserved domain structure comprising N-terminal tandem C2 domains, a highly conserved central RasGAP domain, and a C-terminal pleckstrin-homology domain that is associated with a Bruton's tyrosine kinase motif. RASAL, like Ca2+ -promoted Ras inactivator (CAPRI, or RASAL4), is a cytosolic protein that undergoes a rapid translocation to the plasma membrane in response to receptor-mediated elevation in the concentration of intracellular free Ca2+, a translocation that activates its ability to function as a RasGAP. However, unlike RASAL4, RASAL undergoes an oscillatory translocation to the plasma membrane that occurs in synchrony with repetitive Ca2+ spikes.
Probab=25.26 E-value=23 Score=40.68 Aligned_cols=12 Identities=25% Similarity=0.506 Sum_probs=9.6
Q ss_pred CCcceeEEEeee
Q 002219 210 PKLKEDYVMAKH 221 (952)
Q Consensus 210 ~KgKEG~l~kr~ 221 (952)
.-.|||++.||.
T Consensus 302 ~~~~eg~~~~r~ 313 (333)
T cd05135 302 VTVKEGYLHKRK 313 (333)
T ss_pred chhhhhHhhhcc
Confidence 357999998885
No 193
>PTZ00267 NIMA-related protein kinase; Provisional
Probab=25.14 E-value=1.5e+02 Score=35.32 Aligned_cols=33 Identities=12% Similarity=0.228 Sum_probs=26.3
Q ss_pred ceeEEEEe-CceEEEEEecchhhHHHHHHHHHhc
Q 002219 303 RHAFKVTC-GVRSIRLRTRTGAKVRDWVAAINDA 335 (952)
Q Consensus 303 ~~~~~i~~-~~r~l~l~~~s~~~~~~w~~~i~~~ 335 (952)
.+.|.|.+ ..+++.+.+.|.....+|+.+|..+
T Consensus 442 ~~~~~i~~~~~~~~~~~~~~~~~~~~W~~~~~~~ 475 (478)
T PTZ00267 442 PNQLVLWFNNGQKIIAYAKTAEDRDQWISKFQRA 475 (478)
T ss_pred CceEEEEecCCcEEEEecCChHHHHHHHHHHHHH
Confidence 45566644 5668888999999999999999875
No 194
>cd01231 PH_Lnk LNK-family Pleckstrin homology (PH) domain. LNK-family Pleckstrin homology (PH) domain. The Lnk family of proteins consists of Lnk, APS and SH2B. They are adaptor proteins consisting of a PH domain and an SH2 domain, which mediates signaling through growth factor receptors. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. The lnk family PH domain is likely involved in targeting of the adaptor proteins to the plasma membrane.
Probab=25.07 E-value=3.3e+02 Score=26.42 Aligned_cols=30 Identities=17% Similarity=0.347 Sum_probs=24.3
Q ss_pred eeEEEEeCceEEEEEecchhhHHHHHHHHHh
Q 002219 304 HAFKVTCGVRSIRLRTRTGAKVRDWVAAIND 334 (952)
Q Consensus 304 ~~~~i~~~~r~l~l~~~s~~~~~~w~~~i~~ 334 (952)
+-+++.++. .+++.+.+..++..|.+.|.+
T Consensus 77 FvLK~~~~~-eyI~Ea~d~~q~~SWla~Ir~ 106 (107)
T cd01231 77 FVLKVDDNT-DIIFEVGDEQQLNSWLAELRY 106 (107)
T ss_pred EEEEecCCc-eEEEEcCCHHHHHHHHHHHhc
Confidence 445565544 899999999999999999875
No 195
>cd01225 PH_Cool_Pix Cool (cloned out of library)/Pix (PAK-interactive exchange factor) pleckstrin homology (PH) domain. Cool (cloned out of library)/Pix (PAK-interactive exchange factor) pleckstrin homology (PH) domain. Cool/Pix contains an N-terminal SH3 domain followed by a RhoGEF (DH) and PH domain. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains.
Probab=24.21 E-value=3.8e+02 Score=26.28 Aligned_cols=80 Identities=15% Similarity=0.339 Sum_probs=50.4
Q ss_pred cceEEEEEeCCeEEEEeCCCCCCccEEEEEeCCCCCCCCCCCcccccccccccCCcceeEEEEeCc-eEEEEEecchhhH
Q 002219 247 WQKVWAVLKPGFLALLADPFDTKPMDIIVFDVLPASDGNGEGRVSLATEVKERNPLRHAFKVTCGV-RSIRLRTRTGAKV 325 (952)
Q Consensus 247 w~kRWfvVKdSfL~yv~d~~~~~~~~v~l~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~-r~l~l~~~s~~~~ 325 (952)
-+.|+|++=++.|++++. |.+... |.|-....+. .+.+-+ +.+..+.++.|.|.-.. .++++.|.+...+
T Consensus 28 ~~eRyLvLFp~~LlilS~--s~r~sG-f~yqGkLPL~-----~i~v~~-lEd~e~~~~aFeI~G~li~~i~v~C~~~~e~ 98 (111)
T cd01225 28 KRERYLVLFPNVLLMLSA--SPRMSG-FIYQGKLPLT-----GIIVTR-LEDTEALKNAFEISGPLIERIVVVCNNPQDA 98 (111)
T ss_pred cceeEEEEcCceEEEEEc--CCCccc-eEEeeeeccc-----ccEEec-hHhccCccceEEEeccCcCcEEEEeCCHHHH
Confidence 447899999999999973 222222 3332211111 111111 11233457889987443 7899999999999
Q ss_pred HHHHHHHHhc
Q 002219 326 RDWVAAINDA 335 (952)
Q Consensus 326 ~~w~~~i~~~ 335 (952)
.+|..-++..
T Consensus 99 ~~Wl~hL~~~ 108 (111)
T cd01225 99 QEWVELLNAN 108 (111)
T ss_pred HHHHHHHHhh
Confidence 9999988764
No 196
>PF06087 Tyr-DNA_phospho: Tyrosyl-DNA phosphodiesterase; InterPro: IPR010347 Covalent intermediates between topoisomerase I and DNA can become dead-end complexes that lead to cell death. Tyrosyl-DNA phosphodiesterase can hydrolyse the bond between topoisomerase I and DNA [].; GO: 0008081 phosphoric diester hydrolase activity, 0006281 DNA repair, 0005634 nucleus; PDB: 3SQ8_A 3SQ5_B 3SQ3_A 1Q32_D 3SQ7_A 1QZQ_A 1RGU_B 1RG2_B 1MU9_B 1RFI_B ....
Probab=22.98 E-value=55 Score=39.01 Aligned_cols=38 Identities=24% Similarity=0.234 Sum_probs=22.1
Q ss_pred ceeeeeEEEE---eC-cEEEEecccCCcCccCCCCCcceEEEEEc
Q 002219 899 VYVHSKVMII---DD-SIALIGSANINDRSLLGSRDSEVSVGLYL 939 (952)
Q Consensus 899 iyvHSKlmIV---DD-~~~iIGSANin~RSm~G~rDsEi~v~i~d 939 (952)
.--||||||. |+ --++|.||||...-+ .+-+=+|-+.|
T Consensus 100 g~hHsKm~ll~y~~~~lRVvI~TaNl~~~Dw---~~~~q~vw~~d 141 (443)
T PF06087_consen 100 GTHHSKMMLLFYEDGSLRVVIPTANLTPYDW---NNKTQGVWIQD 141 (443)
T ss_dssp --B--EEEEEEETTCEEEEEEESS-BSHHHH---CSSB-EEEE--
T ss_pred ccccceeEEEEeCCccEEEEEECCCCCHHHH---CCcceeEEEec
Confidence 4589999997 66 789999999987665 22444444444
No 197
>TIGR00230 sfsA sugar fermentation stimulation protein. probable regulatory factor involved in maltose metabolism contains a putative DNA binding domain. Isolated as a gene which enabled E.coli strain MK2001 to use maltose.
Probab=22.85 E-value=2.2e+02 Score=31.21 Aligned_cols=57 Identities=12% Similarity=0.278 Sum_probs=37.5
Q ss_pred HHHHHHHHHHHHHhcccE-EEEeeecCCceeEEEcCCCCchhHHHHHHHHHHhhCCcEEEEE
Q 002219 371 GKAAFEAIASSIEDAKSE-IFICGWWLCPELYLRRPFHNHASSRLDALLEAKAKQGVQIYIL 431 (952)
Q Consensus 371 G~~~f~al~~aI~~Ak~~-I~I~~W~lsPe~Yl~rp~~d~~~~rL~~~L~~aA~rGVkVrIL 431 (952)
|.-....|.+++++ .+. |.+.- .-|....|+| +...+..+.++|.+|++.||+|..+
T Consensus 155 G~kHL~eL~~l~~~-~ra~vlF~v--qr~d~~~f~p-~~~~Dp~fa~~l~~A~~~GVev~a~ 212 (232)
T TIGR00230 155 GRKHLRELEEILKE-SRAVVLFVV--ALPSVRAFSP-NREGDEEYYRLLRRAHEAGVEVRPY 212 (232)
T ss_pred HHHHHHHHHHHHHh-CCEEEEEEE--eCCCCCEEee-CcccCHHHHHHHHHHHHCCCEEEEE
Confidence 44567778887777 433 22211 1223334444 4567789999999999999999875
No 198
>COG1489 SfsA DNA-binding protein, stimulates sugar fermentation [General function prediction only]
Probab=22.47 E-value=2.9e+02 Score=30.49 Aligned_cols=58 Identities=14% Similarity=0.293 Sum_probs=36.8
Q ss_pred HHHHHHHHHHHHHhcccEE-EEeeecCCceeEEEcCCCCchhHHHHHHHHHHhhCCcEEEEE
Q 002219 371 GKAAFEAIASSIEDAKSEI-FICGWWLCPELYLRRPFHNHASSRLDALLEAKAKQGVQIYIL 431 (952)
Q Consensus 371 G~~~f~al~~aI~~Ak~~I-~I~~W~lsPe~Yl~rp~~d~~~~rL~~~L~~aA~rGVkVrIL 431 (952)
|....+.|.++..+--+.+ .+.. +-+..--|+| +...+..+.++|.+|+++||+|...
T Consensus 153 G~KHLreL~~~~~~G~ra~vlf~v--~r~d~~~F~P-~~e~Dp~fa~~l~~A~~~GVev~~~ 211 (235)
T COG1489 153 GQKHLRELERLAKEGYRAVVLFLV--LRSDITRFSP-NREIDPKFAELLREAIKAGVEVLAY 211 (235)
T ss_pred hHHHHHHHHHHHHcCCceEEEEEE--ecCCCcEECc-ccccCHHHHHHHHHHHHcCCEEEEE
Confidence 4556677766666643333 3321 1122333445 5678899999999999999988774
No 199
>cd01228 PH_BCR-related BCR (breakpoint cluster region)-related pleckstrin homology (PH) domain. BCR (breakpoint cluster region)-related pleckstrin homology (PH) domain. The BCR-related protein has a RhoGEF(DH) domain followed by a PH domain, a C2 domain and a RhoGAP domain. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains. PH domains are found in cellular signaling proteins such as serine/threonine kinases, tyrosine kinases, regulators of G-proteins, endocytotic GTPAses, adaptors, a well as cytoskeletal associated molecules and in lipid associated enzymes.
Probab=21.59 E-value=1.9e+02 Score=27.59 Aligned_cols=78 Identities=15% Similarity=0.202 Sum_probs=45.5
Q ss_pred EEeCCeEEEEeCCCCCCccEEEEEeCCC---CCCCC-CC--C------cccccccccccCCcceeEEEEe-CceEEEEEe
Q 002219 253 VLKPGFLALLADPFDTKPMDIIVFDVLP---ASDGN-GE--G------RVSLATEVKERNPLRHAFKVTC-GVRSIRLRT 319 (952)
Q Consensus 253 vVKdSfL~yv~d~~~~~~~~v~l~D~~~---~~~~~-~~--~------~~~~~~~~~~~~~~~~~~~i~~-~~r~l~l~~ 319 (952)
+|+|+||+=+. --.-+++.+|||+-.- .+... ++ . .|.++.-.-+.- .|++.+ .+.+..+-+
T Consensus 3 Lv~eg~lvel~-~~~rK~R~~FLFnDlLvc~~ik~~~~~k~~kY~~~w~IPL~dl~~~~~----~~~~~~~~~KSf~~~a 77 (96)
T cd01228 3 LVKDSFLVELV-EGSRKLRHLFLFTDVLLCAKLKKTSRGKHQQYDCKWYIPLADLSFPSE----PFRIHNKNGKSYTFLL 77 (96)
T ss_pred ccccceeeeeh-hCCCcceEEEeeccEEEEEEeeeccCccccccceeEEEEhHHheecch----hhhccccCCceEEEEe
Confidence 57888888886 3466788899986421 11100 00 0 011111000011 233433 467889999
Q ss_pred cchhhHHHHHHHHHhc
Q 002219 320 RTGAKVRDWVAAINDA 335 (952)
Q Consensus 320 ~s~~~~~~w~~~i~~~ 335 (952)
.|..+-.+|+..|++.
T Consensus 78 sS~~Er~eW~~hI~~~ 93 (96)
T cd01228 78 SSDYERSEWRESIQKL 93 (96)
T ss_pred cCHHHHHHHHHHHHHH
Confidence 9999999999999874
No 200
>KOG3784 consensus Sorting nexin protein SNX27 [General function prediction only; Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=21.15 E-value=2.3e+02 Score=33.39 Aligned_cols=32 Identities=28% Similarity=0.399 Sum_probs=22.5
Q ss_pred CcchHHHHHHHHHHHHHHhccccccchhhhhee
Q 002219 165 SMSDRAKVAMQQYLNHFLGNMDIVNSREVCKFL 197 (952)
Q Consensus 165 ~~~~r~~~~LE~YL~~lL~~~~~~n~~~l~~Fl 197 (952)
++..|+ ..||+||+++-..+++..+.-+-.||
T Consensus 68 ~~~~rr-~~leqylqa~~q~~~l~~s~~~~~fL 99 (407)
T KOG3784|consen 68 QLDSRR-RGLEQYLQAVCQDPVLARSELVQKFL 99 (407)
T ss_pred hhHHHH-HHHHHHHHHHhcCccccchhhhhHHH
Confidence 444454 59999999998877776665444444
No 201
>cd01258 PH_syntrophin Syntrophin pleckstrin homology (PH) domain. Syntrophin pleckstrin homology (PH) domain. Syntrophins are peripheral membrane proteins, which associate with the Duchenne muscular dystrophy protein dystrophin and other proteins to form the dystrophin glycoprotein complex (DGC). There are five syntrophin isoforms, alpha1, beta1, beta2, gamma1, and gamma2. They all contain two PH domains, with the N-teminal PH domain interupted by a PDZ domain. The N-terminal PH domain of alpha1syntrophin binds phosphatidylinositol 4,5-bisphosphate. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains.
Probab=20.14 E-value=3.8e+02 Score=26.12 Aligned_cols=83 Identities=19% Similarity=0.374 Sum_probs=48.8
Q ss_pred CCcceEEEEEeCCeEEEEeCCCCC-----CccEEE-EEeCCCCCCCCCCCcccccccccccCCcceeEEEEeCce--EEE
Q 002219 245 DNWQKVWAVLKPGFLALLADPFDT-----KPMDII-VFDVLPASDGNGEGRVSLATEVKERNPLRHAFKVTCGVR--SIR 316 (952)
Q Consensus 245 ~rw~kRWfvVKdSfL~yv~d~~~~-----~~~~v~-l~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~r--~l~ 316 (952)
.+|++|.++||++-|+.++.|--. ++...+ |.|..+..-..+... ....+..+.|.|..|.+ +-.
T Consensus 17 ~~wrP~F~aL~~~dl~ly~s~P~s~e~w~~p~~~y~L~~~atrvv~~~~~~-------~~~~~~~~~F~irtg~~vesh~ 89 (108)
T cd01258 17 QRWRPRFLALKGSEFLFFETPPLSVEDWSRPLYVYKLYDVATRLVKNSSTR-------RLNDQRDNCFLIRTGTQVENHY 89 (108)
T ss_pred cccceEEEEEcCCcEEEEeCCCCCHHHHhChhhhChhHHhhhheeccCCcc-------CcCCCCceEEEEEcCCceeeEE
Confidence 589999999999987777655221 111111 122112111111100 00124457888888875 567
Q ss_pred EEecchhhHHHHHHHHHh
Q 002219 317 LRTRTGAKVRDWVAAIND 334 (952)
Q Consensus 317 l~~~s~~~~~~w~~~i~~ 334 (952)
+...+.+.+..|..+|..
T Consensus 90 fsVEt~~dL~~W~raiv~ 107 (108)
T cd01258 90 LRVETHRDLASWERALVR 107 (108)
T ss_pred EEecCHHHHHHHHHHHhc
Confidence 788899999999988864
Done!