BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 002220
(951 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3JRN|A Chain A, Crystal Structure Of Tir Domain From Arabidopsis Thaliana
Length = 176
Score = 150 bits (380), Expect = 2e-36, Method: Compositional matrix adjust.
Identities = 79/172 (45%), Positives = 109/172 (63%), Gaps = 4/172 (2%)
Query: 4 SSSSCCKFDVFLSFRGEDTRDNFTSHLYAALCRKKIKTFIDDEELRRGDDISPALLNAIQ 63
SS + K+DVFLSFRG DTR NF S LY L R+ I+TF DD+EL G SP L + I+
Sbjct: 2 SSHTATKYDVFLSFRGHDTRHNFISFLYKELVRRSIRTFKDDKELENGQRFSPELKSPIE 61
Query: 64 GSKISVIIFSKDYASSKWCLDELVKILDCKNLNGQMVVPVFYQVDPSDVRKQTGCFRDAF 123
S+ +V++ S++YA+S WCLDELV I+D + V+P+FY V+P+ VR QTG + F
Sbjct: 62 VSRFAVVVVSENYAASSWCLDELVTIMDFEKKGSITVMPIFYGVEPNHVRWQTGVLAEQF 121
Query: 124 VKHQKQFKDMPEKAQNWKAALTQASNLSGWASKEIRSEAQLVDVIVKDILKK 175
KH ++ PEK W+ ALT + LSG S + +++LVD I +I K
Sbjct: 122 KKHAS--REDPEKVLKWRQALTNFAQLSGDCSGD--DDSKLVDKIANEISNK 169
>pdb|3OZI|A Chain A, Crystal Structure Of The Tir Domain From The Flax Disease
Resistance Protein L6
pdb|3OZI|B Chain B, Crystal Structure Of The Tir Domain From The Flax Disease
Resistance Protein L6
Length = 204
Score = 150 bits (379), Expect = 4e-36, Method: Compositional matrix adjust.
Identities = 80/171 (46%), Positives = 107/171 (62%), Gaps = 3/171 (1%)
Query: 3 SSSSSCCKFDVFLSFRGEDTRDNFTSHLYAALCRKKIKTFIDDEELRRGDDISPALLNAI 62
S S +++VFLSFRG DTR+ FT LY +L R KI TF DD+EL +G +I P LL AI
Sbjct: 28 SGSFPSVEYEVFLSFRGPDTREQFTDFLYQSLRRYKIHTFRDDDELLKGKEIGPNLLRAI 87
Query: 63 QGSKISVIIFSKDYASSKWCLDELVKILDCKNLNG-QMVVPVFYQVDPSDVRKQTGCFRD 121
SKI V I S YA SKWCL EL +I+ + + ++++P+FY VDPSDVR QTGC++
Sbjct: 88 DQSKIYVPIISSGYADSKWCLMELAEIVRRQEEDPRRIILPIFYMVDPSDVRHQTGCYKK 147
Query: 122 AFVKHQKQFKDMPEKAQNWKAALTQASNLSGWASKEIRSEAQLVDVIVKDI 172
AF KH +F + QNWK AL + +L GW + + + D + DI
Sbjct: 148 AFRKHANKFD--GQTIQNWKDALKKVGDLKGWHIGKNDKQGAIADKVSADI 196
>pdb|4FCG|A Chain A, Structure Of The Leucine-Rich Repeat Domain Of The Type
Iii Effector Xcv3220 (Xopl)
Length = 328
Score = 60.5 bits (145), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 60/206 (29%), Positives = 87/206 (42%), Gaps = 22/206 (10%)
Query: 706 IDCAWCVNLTEFPQISGKVVKLRLWYTPIEEVPSSIECLTNLETLDLRLCERLKRVSTSI 765
ID A L + Q + L L P+ +P+SI L L L +R C L + +
Sbjct: 111 IDAAGLXELPDTXQQFAGLETLTLARNPLRALPASIASLNRLRELSIRACPELTELPEPL 170
Query: 766 CKLKSLGSLLLAFCSNLEGFPEILEKMELLETLDLERTGVKELPPSFENLQGLRQLSLIG 825
+ G + + L++L LE TG++ LP S NLQ L+ L I
Sbjct: 171 ASTDASGE---------------HQGLVNLQSLRLEWTGIRSLPASIANLQNLKSLK-IR 214
Query: 826 CSELKCSGWVLPTRISKLSSLERLQLSGC-EIKEIPEDIDCLSSLEVLDLSG-SKIEILP 883
S L G I L LE L L GC ++ P + L+ L L S + LP
Sbjct: 215 NSPLSALGPA----IHHLPKLEELDLRGCTALRNYPPIFGGRAPLKRLILKDCSNLLTLP 270
Query: 884 TSIGQLSRLRQLNLLDCNMLQSIPEL 909
I +L++L +L+L C L +P L
Sbjct: 271 LDIHRLTQLEKLDLRGCVNLSRLPSL 296
Score = 59.7 bits (143), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 49/162 (30%), Positives = 79/162 (48%), Gaps = 16/162 (9%)
Query: 779 CSNLEGFPEILEKMELLETLDLERTGVKELPPSFENLQGLRQLSLIGCSELKCSGWVLPT 838
+ L P+ ++ LETL L R ++ LP S +L LR+LS+ C EL LP
Sbjct: 113 AAGLXELPDTXQQFAGLETLTLARNPLRALPASIASLNRLRELSIRACPELT----ELPE 168
Query: 839 RISK---------LSSLERLQLSGCEIKEIPEDIDCLSSLEVLDLSGSKIEILPTSIGQL 889
++ L +L+ L+L I+ +P I L +L+ L + S + L +I L
Sbjct: 169 PLASTDASGEHQGLVNLQSLRLEWTGIRSLPASIANLQNLKSLKIRNSPLSALGPAIHHL 228
Query: 890 SRLRQLNLLDCNMLQSIPELPRG---LLRLNAQNCRRLRSLP 928
+L +L+L C L++ P + G L RL ++C L +LP
Sbjct: 229 PKLEELDLRGCTALRNYPPIFGGRAPLKRLILKDCSNLLTLP 270
Score = 53.9 bits (128), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 68/235 (28%), Positives = 104/235 (44%), Gaps = 45/235 (19%)
Query: 712 VNLTEFPQISGKVVKLR---LWYTPIEEVPSSIECLTNLETLDLRLCERLKRVSTSICKL 768
V L +FP + ++ L+ + + E+P + + LETL L L+ + SI L
Sbjct: 91 VPLPQFPDQAFRLSHLQHXTIDAAGLXELPDTXQQFAGLETLTL-ARNPLRALPASIASL 149
Query: 769 KSLGSLLLAFCSNLEGFPEILEKMEL---------LETLDLERTGVKELPPSFENLQGLR 819
L L + C L PE L + L++L LE TG++ LP S NLQ L+
Sbjct: 150 NRLRELSIRACPELTELPEPLASTDASGEHQGLVNLQSLRLEWTGIRSLPASIANLQNLK 209
Query: 820 QLSLIGCSELKCSGWVLPTRISKLSSLERLQLSGCEIKEIPEDIDCLSSLEVLDLSG-SK 878
L + R S LS+L G I +P+ LE LDL G +
Sbjct: 210 SLKI---------------RNSPLSAL------GPAIHHLPK-------LEELDLRGCTA 241
Query: 879 IEILPTSIGQLSRLRQLNLLDCNMLQSIP-ELPR--GLLRLNAQNCRRLRSLPEL 930
+ P G + L++L L DC+ L ++P ++ R L +L+ + C L LP L
Sbjct: 242 LRNYPPIFGGRAPLKRLILKDCSNLLTLPLDIHRLTQLEKLDLRGCVNLSRLPSL 296
>pdb|3IZA|A Chain A, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|B Chain B, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|C Chain C, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|D Chain D, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|E Chain E, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|F Chain F, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|G Chain G, Structure Of An Apoptosome-Procaspase-9 Card Complex
Length = 1263
Score = 49.7 bits (117), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 72/274 (26%), Positives = 116/274 (42%), Gaps = 42/274 (15%)
Query: 191 LNSRIQKIKSLLCIGLPDFRTIGIWGMGGIGKTTLAGAVFKLISREFEGKCFMPNVREES 250
+N+ QK+ L G P + TI GM G GK+ LA + S EG CF V S
Sbjct: 139 VNAIQQKLSKLK--GEPGWVTIH--GMAGCGKSVLAAEAVRDHSL-LEG-CFPGGVHWVS 192
Query: 251 ---ENGGGLVYLRDRVVSEIFQEDIKIGTPYLPDYIVERLNRMKVLT---------VLDD 298
++ GL+ + + + Q++ + LP I E +R+++L +LDD
Sbjct: 193 VGKQDKSGLLMKLQNLCTRLDQDES--FSQRLPLNIEEAKDRLRILMLRKHPRSLLILDD 250
Query: 299 VNKVRQLHYLACVLDQFGPGSRIIITTRDKRILDDFGVCDTDIYEVNKLRFHEALVLFSN 358
V + + VL F +I++TTRDK + D + + L + L + S
Sbjct: 251 V-------WDSWVLKAFDSQCQILLTTRDKSVTDSVMGPKYVVPVESSLGKEKGLEILSL 303
Query: 359 FAFKENQCPGDLLALLERVLKYANGNPLALRVLGSFFHRKSKSDWEKALENLN-----RI 413
F N DL ++K G+PL + ++G+ R + WE L+ L RI
Sbjct: 304 FV---NMKKADLPEQAHSIIKECKGSPLVVSLIGALL-RDFPNRWEYYLKQLQNKQFKRI 359
Query: 414 SDPDIYD------VLKISYNDLRPEEKSMFLDIA 441
YD + IS LR + K + D++
Sbjct: 360 RKSSSYDYEALDEAMSISVEMLREDIKDYYTDLS 393
>pdb|1Z6T|A Chain A, Structure Of The Apoptotic Protease-activating Factor 1
Bound To Adp
pdb|1Z6T|B Chain B, Structure Of The Apoptotic Protease-activating Factor 1
Bound To Adp
pdb|1Z6T|C Chain C, Structure Of The Apoptotic Protease-activating Factor 1
Bound To Adp
pdb|1Z6T|D Chain D, Structure Of The Apoptotic Protease-activating Factor 1
Bound To Adp
Length = 591
Score = 48.9 bits (115), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 72/274 (26%), Positives = 116/274 (42%), Gaps = 42/274 (15%)
Query: 191 LNSRIQKIKSLLCIGLPDFRTIGIWGMGGIGKTTLAGAVFKLISREFEGKCFMPNVREES 250
+N+ QK+ L G P + TI GM G GK+ LA + S EG CF V S
Sbjct: 133 VNAIQQKLSKLK--GEPGWVTIH--GMAGCGKSVLAAEAVRDHSL-LEG-CFPGGVHWVS 186
Query: 251 ---ENGGGLVYLRDRVVSEIFQEDIKIGTPYLPDYIVERLNRMKVLT---------VLDD 298
++ GL+ + + + Q++ + LP I E +R+++L +LDD
Sbjct: 187 VGKQDKSGLLMKLQNLCTRLDQDES--FSQRLPLNIEEAKDRLRILMLRKHPRSLLILDD 244
Query: 299 VNKVRQLHYLACVLDQFGPGSRIIITTRDKRILDDFGVCDTDIYEVNKLRFHEALVLFSN 358
V + + VL F +I++TTRDK + D + + L + L + S
Sbjct: 245 V-------WDSWVLKAFDSQCQILLTTRDKSVTDSVMGPKYVVPVESSLGKEKGLEILSL 297
Query: 359 FAFKENQCPGDLLALLERVLKYANGNPLALRVLGSFFHRKSKSDWEKALENLN-----RI 413
F N DL ++K G+PL + ++G+ R + WE L+ L RI
Sbjct: 298 FV---NMKKADLPEQAHSIIKECKGSPLVVSLIGALL-RDFPNRWEYYLKQLQNKQFKRI 353
Query: 414 SDPDIYD------VLKISYNDLRPEEKSMFLDIA 441
YD + IS LR + K + D++
Sbjct: 354 RKSSSYDYEALDEAMSISVEMLREDIKDYYTDLS 387
>pdb|4B8C|D Chain D, Nuclease Module Of The Yeast Ccr4-Not Complex
pdb|4B8C|J Chain J, Nuclease Module Of The Yeast Ccr4-Not Complex
pdb|4B8C|K Chain K, Nuclease Module Of The Yeast Ccr4-Not Complex
pdb|4B8C|L Chain L, Nuclease Module Of The Yeast Ccr4-Not Complex
Length = 727
Score = 47.4 bits (111), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 26/72 (36%), Positives = 41/72 (56%), Gaps = 1/72 (1%)
Query: 836 LPTRISKLSSLERLQLSGCEIKEIPEDIDCLSSLEVLDLSGSKIEILPTSIGQLSRLRQL 895
+ I K L RL L+G + E+P +I LS+L VLDLS +++ LP +G +L+
Sbjct: 239 ISANIFKYDFLTRLYLNGNSLTELPAEIKNLSNLRVLDLSHNRLTSLPAELGSCFQLKYF 298
Query: 896 NLLDCNMLQSIP 907
D NM+ ++P
Sbjct: 299 YFFD-NMVTTLP 309
Score = 30.0 bits (66), Expect = 6.7, Method: Compositional matrix adjust.
Identities = 23/59 (38%), Positives = 30/59 (50%), Gaps = 1/59 (1%)
Query: 849 LQLSGCEIKEIPEDIDCLSSLEVLDLSGSKIEILPTSIGQLSRLRQLNLLDCNMLQSIP 907
L LS +I I +I L L L+G+ + LP I LS LR L+ L N L S+P
Sbjct: 229 LDLSNLQIFNISANIFKYDFLTRLYLNGNSLTELPAEIKNLSNLRVLD-LSHNRLTSLP 286
>pdb|3SFZ|A Chain A, Crystal Structure Of Full-Length Murine Apaf-1
Length = 1249
Score = 47.4 bits (111), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 70/260 (26%), Positives = 107/260 (41%), Gaps = 40/260 (15%)
Query: 205 GLPDFRTIGIWGMGGIGKTTLAGAVFKLISREFEGKCFMPNVREES---ENGGGLVYLRD 261
G P + TI +GM G GK+ LA + S EG CF V S ++ GL+
Sbjct: 145 GEPGWVTI--YGMAGCGKSVLAAEAVRDHSL-LEG-CFSGGVHWVSIGKQDKSGLLMKLQ 200
Query: 262 RVVSEIFQEDIKIGTPYLPDYIVERLNRMKVLT---------VLDDVNKVRQLHYLACVL 312
+ + QE+ + LP I E +R++VL +LDDV + VL
Sbjct: 201 NLCMRLDQEES--FSQRLPLNIEEAKDRLRVLMLRKHPRSLLILDDV-------WDPWVL 251
Query: 313 DQFGPGSRIIITTRDKRILDDFGVCDTDIYEVNKLRFHEALVLFSNFAFKENQCPGDLLA 372
F +I++TTRDK + D + + L + L + S F N DL A
Sbjct: 252 KAFDNQCQILLTTRDKSVTDSVMGPKHVVPVESGLGREKGLEILSLFV---NMKKEDLPA 308
Query: 373 LLERVLKYANGNPLALRVLGSFFHRKSKSDWEKALENLN-----RISDPDIYD------V 421
++K G+PL + ++G+ R + W L L RI YD
Sbjct: 309 EAHSIIKECKGSPLVVSLIGALL-RDFPNRWAYYLRQLQNKQFKRIRKSSSYDYEALDEA 367
Query: 422 LKISYNDLRPEEKSMFLDIA 441
+ IS LR + K + D++
Sbjct: 368 MSISVEMLREDIKDYYTDLS 387
>pdb|2Z63|A Chain A, Crystal Structure Of The Tv8 Hybrid Of Human Tlr4 And
Hagfish Vlrb.61
Length = 570
Score = 44.7 bits (104), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 60/205 (29%), Positives = 97/205 (47%), Gaps = 23/205 (11%)
Query: 716 EFPQISGKVVKLRLWYTPIEEVPSSIEC-LTNLETLDLR--------LCERLKRVSTSIC 766
+FP + K +K RL +T + + E L +LE LDL C + +TS+
Sbjct: 318 QFPTLKLKSLK-RLTFTSNKGGNAFSEVDLPSLEFLDLSRNGLSFKGCCSQSDFGTTSLK 376
Query: 767 KLKSLGSLLLAFCSNLEGFPEILEKMELLETLDLERTGVKELPPSFENLQGLRQLSLIGC 826
L + ++ SN G +E LE LD + + +K++ F LR L +
Sbjct: 377 YLDLSFNGVITMSSNFLG-------LEQLEHLDFQHSNLKQMS-EFSVFLSLRNLIYLDI 428
Query: 827 SELKCSGWVLPTRISKLSSLERLQLSGCEIKE--IPEDIDCLSSLEVLDLSGSKIEIL-P 883
S + + LSSLE L+++G +E +P+ L +L LDLS ++E L P
Sbjct: 429 SHTH-TRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSP 487
Query: 884 TSIGQLSRLRQLNLLDCNMLQSIPE 908
T+ LS L+ LN+ N L+S+P+
Sbjct: 488 TAFNSLSSLQVLNMAS-NQLKSVPD 511
Score = 39.7 bits (91), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 47/165 (28%), Positives = 77/165 (46%), Gaps = 12/165 (7%)
Query: 711 CVNLTEFPQISGKVVKLRLWYTPIEEVPSSIECLTNLETLDLRLCERLKRVS--TSICKL 768
C + ++F S K L L + + + S+ L LE LD + LK++S + L
Sbjct: 364 CCSQSDFGTTSLKY--LDLSFNGVITMSSNFLGLEQLEHLDFQ-HSNLKQMSEFSVFLSL 420
Query: 769 KSLGSLLLAFCSNLEGFPEILEKMELLETLDLERTGVKE--LPPSFENLQGLRQLSLIGC 826
++L L ++ F I + LE L + +E LP F L+ L L L C
Sbjct: 421 RNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQC 480
Query: 827 SELKCSGWVLPTRISKLSSLERLQLSGCEIKEIPEDI-DCLSSLE 870
+ S PT + LSSL+ L ++ ++K +P+ I D L+SL+
Sbjct: 481 QLEQLS----PTAFNSLSSLQVLNMASNQLKSVPDGIFDRLTSLQ 521
>pdb|3SHF|A Chain A, Crystal Structure Of The R265s Mutant Of Full-Length
Murine Apaf-1
Length = 1256
Score = 44.7 bits (104), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 69/260 (26%), Positives = 106/260 (40%), Gaps = 40/260 (15%)
Query: 205 GLPDFRTIGIWGMGGIGKTTLAGAVFKLISREFEGKCFMPNVREES---ENGGGLVYLRD 261
G P + TI +GM G GK+ LA + S EG CF V S ++ GL+
Sbjct: 152 GEPGWVTI--YGMAGCGKSVLAAEAVRDHSL-LEG-CFSGGVHWVSIGKQDKSGLLMKLQ 207
Query: 262 RVVSEIFQEDIKIGTPYLPDYIVERLNRMKVLT---------VLDDVNKVRQLHYLACVL 312
+ + QE+ + LP I E +R++VL +LDDV + VL
Sbjct: 208 NLCMRLDQEE--SFSQRLPLNIEEAKDRLRVLMLRKHPRSLLILDDV-------WDPWVL 258
Query: 313 DQFGPGSRIIITTRDKRILDDFGVCDTDIYEVNKLRFHEALVLFSNFAFKENQCPGDLLA 372
F +I++TT DK + D + + L + L + S F N DL A
Sbjct: 259 KAFDNQCQILLTTSDKSVTDSVMGPKHVVPVESGLGREKGLEILSLFV---NMKKEDLPA 315
Query: 373 LLERVLKYANGNPLALRVLGSFFHRKSKSDWEKALENLN-----RISDPDIYD------V 421
++K G+PL + ++G+ R + W L L RI YD
Sbjct: 316 EAHSIIKECKGSPLVVSLIGALL-RDFPNRWAYYLRQLQNKQFKRIRKSSSYDYEALDEA 374
Query: 422 LKISYNDLRPEEKSMFLDIA 441
+ IS LR + K + D++
Sbjct: 375 MSISVEMLREDIKDYYTDLS 394
>pdb|3CVR|A Chain A, Crystal Structure Of The Full Length Ipah3
Length = 571
Score = 44.3 bits (103), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 42/128 (32%), Positives = 61/128 (47%), Gaps = 14/128 (10%)
Query: 818 LRQLSLIGCSELKCSGWVLPTRIS-KLSSLERLQLSGCEIKEIPEDIDCLSSLEVLDLSG 876
+ Q S + + L S LP + +++ LE Q + + E+P +SLE LD
Sbjct: 58 INQFSELQLNRLNLSS--LPDNLPPQITVLEITQNALISLPELP------ASLEYLDACD 109
Query: 877 SKIEILPTSIGQLSRLRQLNLLDCNMLQSIPELPRGLLRLNAQNCRRLRSLPELPSCLED 936
+++ LP L L +D N L +PELP L +NA N +L LPELP+ LE
Sbjct: 110 NRLSTLPELPASLKHLD----VDNNQLTXLPELPALLEYINADN-NQLTXLPELPTSLEV 164
Query: 937 QDFRNMHL 944
RN L
Sbjct: 165 LSVRNNQL 172
>pdb|3ZYO|A Chain A, Crystal Structure Of The N-Terminal Leucine Rich Repeats
And Immunoglobulin Domain Of Netrin-G Ligand-3
Length = 411
Score = 42.4 bits (98), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 43/134 (32%), Positives = 70/134 (52%), Gaps = 8/134 (5%)
Query: 768 LKSLGSLLLAFCSNLEGFP-EILEKMELLETLDLERTGVKELPP-SFENLQGLRQLSLIG 825
L SL +L L F + L P + E + L L L ++ +P +F + LR+L L
Sbjct: 82 LPSLNTLEL-FDNRLTTVPTQAFEYLSKLRELWLRNNPIESIPSYAFNRVPSLRRLDL-- 138
Query: 826 CSELKCSGWVLPTRISKLSSLERLQLSGCEIKEIPEDIDCLSSLEVLDLSGSKIEIL-PT 884
ELK ++ L +L L L C +K+IP ++ L LE L+LSG++++++ P
Sbjct: 139 -GELKRLEYISEAAFEGLVNLRYLNLGMCNLKDIP-NLTALVRLEELELSGNRLDLIRPG 196
Query: 885 SIGQLSRLRQLNLL 898
S L+ LR+L L+
Sbjct: 197 SFQGLTSLRKLWLM 210
Score = 37.4 bits (85), Expect = 0.044, Method: Compositional matrix adjust.
Identities = 48/150 (32%), Positives = 71/150 (47%), Gaps = 19/150 (12%)
Query: 722 GKVVKLRLWYTPIEEVPS-SIECLTNLETLDLRLCERLKRVSTSICK-LKSLGSLLLAFC 779
K+ +L L PIE +PS + + +L LDL +RL+ +S + + L +L L L C
Sbjct: 107 SKLRELWLRNNPIESIPSYAFNRVPSLRRLDLGELKRLEYISEAAFEGLVNLRYLNLGMC 166
Query: 780 SNLEGFPEI-----LEKMELL-ETLDLERTGVKELPPSFENLQGLRQLSLIGCSELKCSG 833
NL+ P + LE++EL LDL R P SF+ L LR+L L+
Sbjct: 167 -NLKDIPNLTALVRLEELELSGNRLDLIR------PGSFQGLTSLRKLWLMHAQ----VA 215
Query: 834 WVLPTRISKLSSLERLQLSGCEIKEIPEDI 863
+ L SLE L LS + +P D+
Sbjct: 216 TIERNAFDDLKSLEELNLSHNNLMSLPHDL 245
>pdb|3ZYN|A Chain A, Crystal Structure Of The N-Terminal Leucine Rich Repeats
Of Netrin-G Ligand-3
pdb|3ZYN|B Chain B, Crystal Structure Of The N-Terminal Leucine Rich Repeats
Of Netrin-G Ligand-3
Length = 321
Score = 42.4 bits (98), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 43/134 (32%), Positives = 70/134 (52%), Gaps = 8/134 (5%)
Query: 768 LKSLGSLLLAFCSNLEGFP-EILEKMELLETLDLERTGVKELPP-SFENLQGLRQLSLIG 825
L SL +L L F + L P + E + L L L ++ +P +F + LR+L L
Sbjct: 82 LPSLNTLEL-FDNRLTTVPTQAFEYLSKLRELWLRNNPIESIPSYAFNRVPSLRRLDL-- 138
Query: 826 CSELKCSGWVLPTRISKLSSLERLQLSGCEIKEIPEDIDCLSSLEVLDLSGSKIEIL-PT 884
ELK ++ L +L L L C +K+IP ++ L LE L+LSG++++++ P
Sbjct: 139 -GELKRLEYISEAAFEGLVNLRYLNLGMCNLKDIP-NLTALVRLEELELSGNRLDLIRPG 196
Query: 885 SIGQLSRLRQLNLL 898
S L+ LR+L L+
Sbjct: 197 SFQGLTSLRKLWLM 210
Score = 37.4 bits (85), Expect = 0.043, Method: Compositional matrix adjust.
Identities = 48/150 (32%), Positives = 71/150 (47%), Gaps = 19/150 (12%)
Query: 722 GKVVKLRLWYTPIEEVPS-SIECLTNLETLDLRLCERLKRVSTSICK-LKSLGSLLLAFC 779
K+ +L L PIE +PS + + +L LDL +RL+ +S + + L +L L L C
Sbjct: 107 SKLRELWLRNNPIESIPSYAFNRVPSLRRLDLGELKRLEYISEAAFEGLVNLRYLNLGMC 166
Query: 780 SNLEGFPEI-----LEKMELL-ETLDLERTGVKELPPSFENLQGLRQLSLIGCSELKCSG 833
NL+ P + LE++EL LDL R G SF+ L LR+L L+
Sbjct: 167 -NLKDIPNLTALVRLEELELSGNRLDLIRPG------SFQGLTSLRKLWLMHAQ----VA 215
Query: 834 WVLPTRISKLSSLERLQLSGCEIKEIPEDI 863
+ L SLE L LS + +P D+
Sbjct: 216 TIERNAFDDLKSLEELNLSHNNLMSLPHDL 245
>pdb|3G06|A Chain A, The Salmonella Virulence Effector Ssph2 Functions As A
Novel E3 Ligase
Length = 622
Score = 42.0 bits (97), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 46/169 (27%), Positives = 74/169 (43%), Gaps = 26/169 (15%)
Query: 780 SNLEGFPEILEKMELLETLDLERTGVKELPPSFENLQGLRQLS--------LIGCSELKC 831
+NL P + ++ LE + T + LPP GL +LS L C
Sbjct: 71 NNLTSLPALPPELRTLEVSGNQLTSLPVLPP------GLLELSIFSNPLTHLPALPSGLC 124
Query: 832 SGWVLPTRISKL----SSLERLQLSGCEIKEIPEDIDCLSSLEVLDLSGSKIEILPTSIG 887
W+ +++ L L+ L +S ++ +P L L + + + +LP+ +
Sbjct: 125 KLWIFGNQLTSLPVLPPGLQELSVSDNQLASLPALPSELCKLWAYNNQLTSLPMLPSGLQ 184
Query: 888 QLSRLRQLNLLDCNMLQSIPELPRGLLRLNAQNCRRLRSLPELPSCLED 936
+LS + N L S+P LP L +L A N RL SLP LPS L++
Sbjct: 185 ELS-------VSDNQLASLPTLPSELYKLWAYN-NRLTSLPALPSGLKE 225
Score = 31.6 bits (70), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 56/222 (25%), Positives = 91/222 (40%), Gaps = 42/222 (18%)
Query: 714 LTEFPQISGKVVKLRLWYTPIEEVPSSIECLTNLETLDLRLCE------RLKRVSTSICK 767
LT P + +++L ++ P+ +P+ L L +L L+ +S S +
Sbjct: 93 LTSLPVLPPGLLELSIFSNPLTHLPALPSGLCKLWIFGNQLTSLPVLPPGLQELSVSDNQ 152
Query: 768 LKSLGSLLLAFCSNLEGFPEILEKMELLETLDLERTGVKELPPSFENLQGLRQLSLIGCS 827
L SL +L C ++ L +L + +G++EL S L L L S
Sbjct: 153 LASLPALPSELC-------KLWAYNNQLTSLPMLPSGLQELSVSDNQLASLPTLP----S 201
Query: 828 ELKCSGWVLPTRISKLSSLERLQLSGCEIKEIPEDIDCLSSLEVLDLSGSKIEILPTSIG 887
EL W R++ L +L S L+ L +SG+++ LP
Sbjct: 202 EL-YKLWAYNNRLTSLPALP-------------------SGLKELIVSGNRLTSLPVLPS 241
Query: 888 QLSRLRQLNLLDCNMLQSIPELPRGLLRLNAQNCRRLRSLPE 929
+L L ++ N L S+P LP GLL L+ +L LPE
Sbjct: 242 ELKEL----MVSGNRLTSLPMLPSGLLSLSVYR-NQLTRLPE 278
>pdb|3H16|A Chain A, Crystal Structure Of A Bacteria Tir Domain, Pdtir From
Paracoccus Denitrificans
pdb|3H16|B Chain B, Crystal Structure Of A Bacteria Tir Domain, Pdtir From
Paracoccus Denitrificans
pdb|3H16|C Chain C, Crystal Structure Of A Bacteria Tir Domain, Pdtir From
Paracoccus Denitrificans
pdb|3H16|D Chain D, Crystal Structure Of A Bacteria Tir Domain, Pdtir From
Paracoccus Denitrificans
Length = 154
Score = 41.6 bits (96), Expect = 0.002, Method: Composition-based stats.
Identities = 23/101 (22%), Positives = 47/101 (46%), Gaps = 1/101 (0%)
Query: 12 DVFLSFRGEDTRDNFTSHLYAALCRKKIKTFIDDEELRRGDDISPALLNAIQGSKISVII 71
D+F+S ED D F L L + + DD LR GD + ++ + S+ +++
Sbjct: 22 DIFISHAWEDKAD-FVEALAHTLRAAGAEVWYDDFSLRPGDSLRRSIDKGLGSSRFGIVV 80
Query: 72 FSKDYASSKWCLDELVKILDCKNLNGQMVVPVFYQVDPSDV 112
S + +W EL + ++ ++P++++V +V
Sbjct: 81 LSTHFFKKEWPQKELDGLFQLESSGRSRILPIWHKVSKDEV 121
>pdb|1G9U|A Chain A, Crystal Structure Of Yopm-leucine Rich Effector Protein
From Yersinia Pestis
pdb|1JL5|A Chain A, Novel Molecular Architecture Of Yopm-A Leucine-Rich
Effector Protein From Yersinia Pestis
Length = 454
Score = 40.0 bits (92), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 54/198 (27%), Positives = 93/198 (46%), Gaps = 28/198 (14%)
Query: 763 TSICKLKSLGSLLLAFCSNLEGFPEILEKMELLETLDLERTGVKELPPSFENLQGLRQLS 822
+S+ +L L+A C++L PE+ + ++ L + + +LPP E L G+
Sbjct: 84 SSLPELPPHLESLVASCNSLTELPELPQSLKSLLVDNNNLKALSDLPPLLEYL-GVSNNQ 142
Query: 823 LIGCSELKCSGW-----VLPTRISKL----SSLERLQLSGCEIKEIPE--DIDCLSSLEV 871
L EL+ S + V + KL SLE + +++E+PE ++ L+++
Sbjct: 143 LEKLPELQNSSFLKIIDVDNNSLKKLPDLPPSLEFIAAGNNQLEELPELQNLPFLTAIYA 202
Query: 872 LDLSGSKIEILPTS----------IGQLSRLRQLNLL-----DCNMLQSIPELPRGLLRL 916
+ S K+ LP S + +L L+ L L D N+L+++P+LP L L
Sbjct: 203 DNNSLKKLPDLPLSLESIVAGNNILEELPELQNLPFLTTIYADNNLLKTLPDLPPSLEAL 262
Query: 917 NAQNCRRLRSLPELPSCL 934
N ++ L LPELP L
Sbjct: 263 NVRD-NYLTDLPELPQSL 279
Score = 35.4 bits (80), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 45/161 (27%), Positives = 70/161 (43%), Gaps = 15/161 (9%)
Query: 782 LEGFPEILEKMELLETLDLERTGVKELPPSFENLQG----LRQLSLIGCS--ELKCSGWV 835
L PE+ + + L+ + +G+ ELPP+ L +R L + S EL S
Sbjct: 269 LTDLPELPQSLTFLDVSENIFSGLSELPPNLYYLNASSNEIRSLCDLPPSLEELNVSNNK 328
Query: 836 LPTRISKLSSLERLQLSGCEIKEIPEDIDCLSSLEVLDLSGSKIEILPTSIGQLSRLRQL 895
L + LERL S + E+PE L L V + +P S+ L R+
Sbjct: 329 LIELPALPPRLERLIASFNHLAEVPELPQNLKQLHVEYNPLREFPDIPESVEDL-RMNS- 386
Query: 896 NLLDCNMLQSIPELPRGLLRLNAQNCRRLRSLPELPSCLED 936
L +PELP+ L +L+ + LR P++P +ED
Sbjct: 387 ------HLAEVPELPQNLKQLHVE-TNPLREFPDIPESVED 420
>pdb|3E6J|A Chain A, Crystal Structure Of Variable Lymphocyte Receptor (Vlr)
Rbc36 In Complex With H-Trisaccharide
Length = 229
Score = 39.7 bits (91), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 32/100 (32%), Positives = 55/100 (55%), Gaps = 11/100 (11%)
Query: 837 PTRISKLSSLERLQLSGCEIKEIPEDI-DCLSSLEVLDLSGSKIEILPTSI-GQLSRLRQ 894
P L +L+ L L ++ +P + D L+ L VLDL +++ +LP+++ +L L++
Sbjct: 57 PGVFDSLINLKELYLGSNQLGALPVGVFDSLTQLTVLDLGTNQLTVLPSAVFDRLVHLKE 116
Query: 895 LNLLDCNMLQSIPELPRGLLRLN-----AQNCRRLRSLPE 929
L + CN L ELPRG+ RL A + +L+S+P
Sbjct: 117 L-FMCCNKLT---ELPRGIERLTHLTHLALDQNQLKSIPH 152
>pdb|4G8A|A Chain A, Crystal Structure Of Human Tlr4 Polymorphic Variant D299g
And T399i In Complex With Md-2 And Lps
pdb|4G8A|B Chain B, Crystal Structure Of Human Tlr4 Polymorphic Variant D299g
And T399i In Complex With Md-2 And Lps
Length = 635
Score = 39.3 bits (90), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 51/174 (29%), Positives = 78/174 (44%), Gaps = 12/174 (6%)
Query: 711 CVNLTEFPQISGKVVKLRLWYTPIEEVPSSIECLTNLETLDLRLCERLKRVS--TSICKL 768
C + ++F IS K L L + + + S+ L LE LD + LK++S + L
Sbjct: 388 CCSQSDFGTISLKY--LDLSFNGVITMSSNFLGLEQLEHLDFQ-HSNLKQMSEFSVFLSL 444
Query: 769 KSLGSLLLAFCSNLEGFPEILEKMELLETLDLERTGVKE--LPPSFENLQGLRQLSLIGC 826
++L L ++ F I + LE L + +E LP F L+ L L L C
Sbjct: 445 RNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQC 504
Query: 827 SELKCSGWVLPTRISKLSSLERLQLSGCEIKEIPE-DIDCLSSLEVLDLSGSKI 879
+ S PT + LSSL+ L +S + CL+SL+VLD S + I
Sbjct: 505 QLEQLS----PTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHI 554
>pdb|3ZYJ|A Chain A, Netring1 In Complex With Ngl1
pdb|3ZYJ|C Chain C, Netring1 In Complex With Ngl1
Length = 440
Score = 38.1 bits (87), Expect = 0.022, Method: Compositional matrix adjust.
Identities = 34/103 (33%), Positives = 54/103 (52%), Gaps = 6/103 (5%)
Query: 795 LETLDLERTGVKELPP-SFENLQGLRQLSLIGCSELKCSGWVLPTRISKLSSLERLQLSG 853
L+ L L ++ +P +F + LR+L L ELK ++ LS+L L L+
Sbjct: 138 LKELWLRNNPIESIPSYAFNRIPSLRRLDL---GELKRLSYISEGAFEGLSNLRYLNLAM 194
Query: 854 CEIKEIPEDIDCLSSLEVLDLSGSKIE-ILPTSIGQLSRLRQL 895
C ++EIP ++ L L+ LDLSG+ + I P S L L++L
Sbjct: 195 CNLREIP-NLTPLIKLDELDLSGNHLSAIRPGSFQGLMHLQKL 236
>pdb|3RIZ|A Chain A, Crystal Structure Of The Plant Steroid Receptor Bri1
Ectodomain
pdb|3RJ0|A Chain A, Plant Steroid Receptor Bri1 Ectodomain In Complex With
Brassinolide
Length = 772
Score = 37.4 bits (85), Expect = 0.043, Method: Compositional matrix adjust.
Identities = 30/102 (29%), Positives = 55/102 (53%), Gaps = 6/102 (5%)
Query: 810 PSFENLQGLRQLSLIGCSELKCSGWVLPTRISKLSSLERLQLSGCEIK-EIPEDIDCLSS 868
P+F+N + L + S SG++ P I + L L L +I IP+++ L
Sbjct: 623 PTFDNNGSMMFLDM---SYNMLSGYI-PKEIGSMPYLFILNLGHNDISGSIPDEVGDLRG 678
Query: 869 LEVLDLSGSKIEI-LPTSIGQLSRLRQLNLLDCNMLQSIPEL 909
L +LDLS +K++ +P ++ L+ L +++L + N+ IPE+
Sbjct: 679 LNILDLSSNKLDGRIPQAMSALTMLTEIDLSNNNLSGPIPEM 720
Score = 34.3 bits (77), Expect = 0.37, Method: Compositional matrix adjust.
Identities = 46/134 (34%), Positives = 67/134 (50%), Gaps = 13/134 (9%)
Query: 787 EILEKMELLETLDL---ERTGVKELPPSFENLQGLRQLSLIGCSELKCSGWVLPTRI-SK 842
+ L KM L+ LDL E +G ELP S NL L + S SG +LP +
Sbjct: 334 DTLLKMRGLKVLDLSFNEFSG--ELPESLTNLSA--SLLTLDLSSNNFSGPILPNLCQNP 389
Query: 843 LSSLERLQLSGCEIK-EIPEDIDCLSSLEVLDLSGSKIE-ILPTSIGQLSRLRQLNLLDC 900
++L+ L L +IP + S L L LS + + +P+S+G LS+LR L L
Sbjct: 390 KNTLQELYLQNNGFTGKIPPTLSNCSELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLW-L 448
Query: 901 NMLQSIPELPRGLL 914
NML+ E+P+ L+
Sbjct: 449 NMLEG--EIPQELM 460
>pdb|3FXI|A Chain A, Crystal Structure Of The Human Tlr4-Human Md-2-E.Coli Lps
Ra Complex
pdb|3FXI|B Chain B, Crystal Structure Of The Human Tlr4-Human Md-2-E.Coli Lps
Ra Complex
Length = 605
Score = 37.0 bits (84), Expect = 0.050, Method: Compositional matrix adjust.
Identities = 50/174 (28%), Positives = 77/174 (44%), Gaps = 12/174 (6%)
Query: 711 CVNLTEFPQISGKVVKLRLWYTPIEEVPSSIECLTNLETLDLRLCERLKRVS--TSICKL 768
C + ++F S K L L + + + S+ L LE LD + LK++S + L
Sbjct: 364 CCSQSDFGTTSLKY--LDLSFNGVITMSSNFLGLEQLEHLDFQ-HSNLKQMSEFSVFLSL 420
Query: 769 KSLGSLLLAFCSNLEGFPEILEKMELLETLDLERTGVKE--LPPSFENLQGLRQLSLIGC 826
++L L ++ F I + LE L + +E LP F L+ L L L C
Sbjct: 421 RNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQC 480
Query: 827 SELKCSGWVLPTRISKLSSLERLQLSGCEIKEIPE-DIDCLSSLEVLDLSGSKI 879
+ S PT + LSSL+ L +S + CL+SL+VLD S + I
Sbjct: 481 QLEQLS----PTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHI 530
>pdb|3RGX|A Chain A, Structural Insight Into Brassinosteroid Perception By Bri1
pdb|3RGZ|A Chain A, Structural Insight Into Brassinosteroid Perception By Bri1
Length = 768
Score = 37.0 bits (84), Expect = 0.052, Method: Compositional matrix adjust.
Identities = 30/102 (29%), Positives = 55/102 (53%), Gaps = 6/102 (5%)
Query: 810 PSFENLQGLRQLSLIGCSELKCSGWVLPTRISKLSSLERLQLSGCEIK-EIPEDIDCLSS 868
P+F+N + L + S SG++ P I + L L L +I IP+++ L
Sbjct: 626 PTFDNNGSMMFLDM---SYNMLSGYI-PKEIGSMPYLFILNLGHNDISGSIPDEVGDLRG 681
Query: 869 LEVLDLSGSKIEI-LPTSIGQLSRLRQLNLLDCNMLQSIPEL 909
L +LDLS +K++ +P ++ L+ L +++L + N+ IPE+
Sbjct: 682 LNILDLSSNKLDGRIPQAMSALTMLTEIDLSNNNLSGPIPEM 723
Score = 33.9 bits (76), Expect = 0.46, Method: Compositional matrix adjust.
Identities = 46/134 (34%), Positives = 67/134 (50%), Gaps = 13/134 (9%)
Query: 787 EILEKMELLETLDL---ERTGVKELPPSFENLQGLRQLSLIGCSELKCSGWVLPTRI-SK 842
+ L KM L+ LDL E +G ELP S NL L + S SG +LP +
Sbjct: 337 DTLLKMRGLKVLDLSFNEFSG--ELPESLTNLSA--SLLTLDLSSNNFSGPILPNLCQNP 392
Query: 843 LSSLERLQLSGCEIK-EIPEDIDCLSSLEVLDLSGSKIE-ILPTSIGQLSRLRQLNLLDC 900
++L+ L L +IP + S L L LS + + +P+S+G LS+LR L L
Sbjct: 393 KNTLQELYLQNNGFTGKIPPTLSNCSELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLW-L 451
Query: 901 NMLQSIPELPRGLL 914
NML+ E+P+ L+
Sbjct: 452 NMLEG--EIPQELM 463
>pdb|3ZYI|A Chain A, Netring2 In Complex With Ngl2
Length = 452
Score = 36.6 bits (83), Expect = 0.075, Method: Compositional matrix adjust.
Identities = 34/113 (30%), Positives = 57/113 (50%), Gaps = 6/113 (5%)
Query: 789 LEKMELLETLDLERTGVKELPP-SFENLQGLRQLSLIGCSELKCSGWVLPTRISKLSSLE 847
E + L L L ++ +P +F + L +L L ELK ++ L +L+
Sbjct: 143 FEYLSKLRELWLRNNPIESIPSYAFNRVPSLMRLDL---GELKKLEYISEGAFEGLFNLK 199
Query: 848 RLQLSGCEIKEIPEDIDCLSSLEVLDLSGSKI-EILPTSIGQLSRLRQLNLLD 899
L L C IK++P ++ L LE L++SG+ EI P S LS L++L +++
Sbjct: 200 YLNLGMCNIKDMP-NLTPLVGLEELEMSGNHFPEIRPGSFHGLSSLKKLWVMN 251
>pdb|2O6S|A Chain A, Structural Diversity Of The Hagfish Variable Lymphocyte
Receptors B59
pdb|2O6S|B Chain B, Structural Diversity Of The Hagfish Variable Lymphocyte
Receptors B59
Length = 208
Score = 35.0 bits (79), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 36/102 (35%), Positives = 54/102 (52%), Gaps = 14/102 (13%)
Query: 836 LPTRISKLSSLERLQLSGCEIKEIPEDI-DCLSSLEVLDLSGSKIEILPTSI-GQLSRLR 893
+PT I ++ L L +K +P + D L+SL L L G+K++ LP + +L+ L
Sbjct: 22 VPTGIPAQTTY--LDLETNSLKSLPNGVFDELTSLTQLYLGGNKLQSLPNGVFNKLTSLT 79
Query: 894 QLNLLDCNMLQSIPELPRGL------LRLNAQNCRRLRSLPE 929
LN L N LQS LP G+ L+ A N +L+SLP+
Sbjct: 80 YLN-LSTNQLQS---LPNGVFDKLTQLKELALNTNQLQSLPD 117
>pdb|1XCD|A Chain A, Dimeric Bovine Tissue-Extracted Decorin, Crystal Form 1
pdb|1XEC|A Chain A, Dimeric Bovine Tissue-Extracted Decorin, Crystal Form 2
pdb|1XEC|B Chain B, Dimeric Bovine Tissue-Extracted Decorin, Crystal Form 2
Length = 329
Score = 34.7 bits (78), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 34/102 (33%), Positives = 49/102 (48%), Gaps = 9/102 (8%)
Query: 765 ICKLKSLGSLLLAFCSNL--EGFPEILEKMELLETLDLERTGVKELPPS-FENLQGLRQL 821
+C + L + CS+L E P+ L L LDL+ + E+ F+NL+ L L
Sbjct: 24 VCPFRCQCHLRVVQCSDLGLEKVPKDLPPDTAL--LDLQNNKITEIKDGDFKNLKNLHTL 81
Query: 822 SLIGCSELKCSGWVLPTRISKLSSLERLQLSGCEIKEIPEDI 863
LI K S P + L LERL LS ++KE+PE +
Sbjct: 82 ILINNKISKIS----PGAFAPLVKLERLYLSKNQLKELPEKM 119
>pdb|1XKU|A Chain A, Crystal Structure Of The Dimeric Protein Core Of Decorin,
The Archetypal Small Leucine-Rich Repeat Proteoglycan
Length = 330
Score = 34.7 bits (78), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 34/102 (33%), Positives = 49/102 (48%), Gaps = 9/102 (8%)
Query: 765 ICKLKSLGSLLLAFCSNL--EGFPEILEKMELLETLDLERTGVKELPPS-FENLQGLRQL 821
+C + L + CS+L E P+ L L LDL+ + E+ F+NL+ L L
Sbjct: 24 VCPFRCQCHLRVVQCSDLGLEKVPKDLPPDTAL--LDLQNNKITEIKDGDFKNLKNLHTL 81
Query: 822 SLIGCSELKCSGWVLPTRISKLSSLERLQLSGCEIKEIPEDI 863
LI K S P + L LERL LS ++KE+PE +
Sbjct: 82 ILINNKISKIS----PGAFAPLVKLERLYLSKNQLKELPEKM 119
>pdb|2Z66|A Chain A, Crystal Structure Of The Vt3 Hybrid Of Human Tlr4 And
Hagfish Vlrb.61
pdb|2Z66|B Chain B, Crystal Structure Of The Vt3 Hybrid Of Human Tlr4 And
Hagfish Vlrb.61
pdb|2Z66|C Chain C, Crystal Structure Of The Vt3 Hybrid Of Human Tlr4 And
Hagfish Vlrb.61
pdb|2Z66|D Chain D, Crystal Structure Of The Vt3 Hybrid Of Human Tlr4 And
Hagfish Vlrb.61
Length = 306
Score = 34.7 bits (78), Expect = 0.29, Method: Compositional matrix adjust.
Identities = 50/174 (28%), Positives = 77/174 (44%), Gaps = 12/174 (6%)
Query: 711 CVNLTEFPQISGKVVKLRLWYTPIEEVPSSIECLTNLETLDLRLCERLKRVS--TSICKL 768
C + ++F S K L L + + + S+ L LE LD + LK++S + L
Sbjct: 69 CCSQSDFGTTSLKY--LDLSFNGVITMSSNFLGLEQLEHLDFQH-SNLKQMSEFSVFLSL 125
Query: 769 KSLGSLLLAFCSNLEGFPEILEKMELLETLDLERTGVKE--LPPSFENLQGLRQLSLIGC 826
++L L ++ F I + LE L + +E LP F L+ L L L C
Sbjct: 126 RNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQC 185
Query: 827 SELKCSGWVLPTRISKLSSLERLQLSGCEIKEIPE-DIDCLSSLEVLDLSGSKI 879
+ S PT + LSSL+ L +S + CL+SL+VLD S + I
Sbjct: 186 QLEQLS----PTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHI 235
>pdb|3G3A|A Chain A, Structure Of A Lamprey Variable Lymphocyte Receptor In
Complex With A Protein Antigen
pdb|3G3A|C Chain C, Structure Of A Lamprey Variable Lymphocyte Receptor In
Complex With A Protein Antigen
pdb|3G3A|E Chain E, Structure Of A Lamprey Variable Lymphocyte Receptor In
Complex With A Protein Antigen
pdb|3G3A|G Chain G, Structure Of A Lamprey Variable Lymphocyte Receptor In
Complex With A Protein Antigen
Length = 178
Score = 34.7 bits (78), Expect = 0.29, Method: Composition-based stats.
Identities = 30/86 (34%), Positives = 49/86 (56%), Gaps = 8/86 (9%)
Query: 827 SELKCSGWVL---PTRISKLSSLERLQLSGCEIKEI-PEDIDCLSSLEVLDLSGSKIEIL 882
+ + CSG L PT I ++ + L L +I ++ P D L+ L LDL +++ +L
Sbjct: 20 TTVDCSGKSLASVPTGIP--TTTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLTVL 77
Query: 883 PTSI-GQLSRLRQLNLLDCNMLQSIP 907
P + +L++L QL+L D N L+SIP
Sbjct: 78 PAGVFDKLTQLTQLSLND-NQLKSIP 102
>pdb|3G39|A Chain A, Structure Of A Lamprey Variable Lymphocyte Receptor
Length = 170
Score = 34.3 bits (77), Expect = 0.35, Method: Composition-based stats.
Identities = 30/86 (34%), Positives = 49/86 (56%), Gaps = 8/86 (9%)
Query: 827 SELKCSGWVL---PTRISKLSSLERLQLSGCEIKEI-PEDIDCLSSLEVLDLSGSKIEIL 882
+ + CSG L PT I ++ + L L +I ++ P D L+ L LDL +++ +L
Sbjct: 12 TTVDCSGKSLASVPTGIP--TTTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLTVL 69
Query: 883 PTSI-GQLSRLRQLNLLDCNMLQSIP 907
P + +L++L QL+L D N L+SIP
Sbjct: 70 PAGVFDKLTQLTQLSLND-NQLKSIP 94
>pdb|3G3B|A Chain A, Structure Of A Lamprey Variable Lymphocyte Receptor Mutant
In Complex With A Protein Antigen
pdb|3G3B|C Chain C, Structure Of A Lamprey Variable Lymphocyte Receptor Mutant
In Complex With A Protein Antigen
pdb|3G3B|E Chain E, Structure Of A Lamprey Variable Lymphocyte Receptor Mutant
In Complex With A Protein Antigen
pdb|3G3B|G Chain G, Structure Of A Lamprey Variable Lymphocyte Receptor Mutant
In Complex With A Protein Antigen
Length = 170
Score = 33.5 bits (75), Expect = 0.62, Method: Composition-based stats.
Identities = 30/86 (34%), Positives = 48/86 (55%), Gaps = 8/86 (9%)
Query: 827 SELKCSGWVL---PTRISKLSSLERLQLSGCEIKEI-PEDIDCLSSLEVLDLSGSKIEIL 882
+ + CSG L PT I ++ + L L I ++ P D L+ L LDL +++ +L
Sbjct: 12 TTVDCSGKSLASVPTGIP--TTTQVLYLYDNRITKLEPGVFDRLTQLTRLDLDNNQLTVL 69
Query: 883 PTSI-GQLSRLRQLNLLDCNMLQSIP 907
P + +L++L QL+L D N L+SIP
Sbjct: 70 PAGVFDKLTQLTQLSLND-NQLKSIP 94
>pdb|1XEU|A Chain A, Crystal Structure Of Internalin C From Listeria
Monocytogenes
Length = 263
Score = 33.1 bits (74), Expect = 0.68, Method: Compositional matrix adjust.
Identities = 23/57 (40%), Positives = 36/57 (63%), Gaps = 5/57 (8%)
Query: 843 LSSLERLQLSGCEIKEIPEDIDCLSSLEVLDLSGSKIEILPTSIGQLSRLRQLNLLD 899
L +LE L + ++K I + LS LEVLDL G++I T+ G L+RL+++N +D
Sbjct: 127 LKNLEILSIRNNKLKSIVM-LGFLSKLEVLDLHGNEI----TNTGGLTRLKKVNWID 178
>pdb|4FHO|A Chain A, Crystal Structure Of An Internalin C2 (Inlc2) From
Listeria Monocytogenes Str. 4b F2365 At 1.90 A
Resolution
pdb|4FHO|B Chain B, Crystal Structure Of An Internalin C2 (Inlc2) From
Listeria Monocytogenes Str. 4b F2365 At 1.90 A
Resolution
Length = 231
Score = 32.7 bits (73), Expect = 0.97, Method: Composition-based stats.
Identities = 38/115 (33%), Positives = 59/115 (51%), Gaps = 10/115 (8%)
Query: 795 LETLDLERTGVKELPPSFENLQGLRQLSLIGCSELKCSGWVLPTRISKLSSLERLQLSGC 854
+ TL TGV + E +Q L +LIG ELK + T + L+ + L+LSG
Sbjct: 49 IATLSAFNTGVT----TIEGIQYLN--NLIGL-ELKDNQITDLTPLKNLTKITELELSGN 101
Query: 855 EIKEIPEDIDCLSSLEVLDLSGSKIEILPTSIGQLSRLRQLNLLDCNMLQSIPEL 909
+K + I L S++ LDL+ ++I + T + LS L Q+ LD N + +I L
Sbjct: 102 PLKNVSA-IAGLQSIKTLDLTSTQITDV-TPLAGLSNL-QVLYLDLNQITNISPL 153
>pdb|3A79|B Chain B, Crystal Structure Of Tlr2-Tlr6-Pam2csk4 Complex
Length = 562
Score = 32.3 bits (72), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 33/122 (27%), Positives = 58/122 (47%), Gaps = 18/122 (14%)
Query: 795 LETLDLERTGVK---ELPPSFENLQGLRQL-----SLIGCSELKCSGWVLPTRISKLSSL 846
L+TL L+R G+K ++ +N+ L L SL + + W + LSS
Sbjct: 379 LQTLILQRNGLKNFFKVALMTKNMSSLETLDVSLNSLNSHAYDRTCAWAESILVLNLSSN 438
Query: 847 ERLQLSGCEIKEIPEDIDCLSSLEVLDLSGSKIEILPTSIGQLSRLRQLNLLDCNMLQSI 906
L+G + +P + +VLDL ++I +P + L L++LN+ N L+S+
Sbjct: 439 ---MLTGSVFRCLPPKV------KVLDLHNNRIMSIPKDVTHLQALQELNVAS-NQLKSV 488
Query: 907 PE 908
P+
Sbjct: 489 PD 490
>pdb|2Z7X|B Chain B, Crystal Structure Of The Tlr1-Tlr2 Heterodimer Induced By
Binding Of A Tri-Acylated Lipopeptide
Length = 520
Score = 32.3 bits (72), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 34/115 (29%), Positives = 56/115 (48%), Gaps = 4/115 (3%)
Query: 795 LETLDLERTGVKELPPSFENLQGLRQLSLIGCSELKCSGWVLPTRISKLSSLERLQLSGC 854
LETL L+ +KEL E ++ L + S+ S S SL L +S
Sbjct: 350 LETLILQMNQLKELSKIAEMTTQMKSLQQLDISQNSVSYDEKKGDCSWTKSLLSLNMSSN 409
Query: 855 EIKEIPEDIDCLSS-LEVLDLSGSKIEILPTSIGQLSRLRQLNLLDCNMLQSIPE 908
+ + CL ++VLDL +KI+ +P + +L L++LN+ N L+S+P+
Sbjct: 410 ILTDTI--FRCLPPRIKVLDLHSNKIKSIPKQVVKLEALQELNVAS-NQLKSVPD 461
>pdb|2OMT|A Chain A, Crystal Structure Of Inla G194s+sHEC1 COMPLEX
Length = 462
Score = 32.0 bits (71), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 53/188 (28%), Positives = 87/188 (46%), Gaps = 32/188 (17%)
Query: 739 SSIECLTNLETLDLRLCERLKRVSTSICKLKSLGSLL----LAFCSNLEGFPEILEKMEL 794
+ I+ L NL L+ RL+ S +I + +L L L+F SN + L +
Sbjct: 120 TDIDPLKNLTNLN-----RLELSSNTISDISALSGLTSLQQLSFSSNQVTDLKPLANLTT 174
Query: 795 LETLDLERTGVKELP--PSFENLQGL----RQLSLIGCSELKCSGWVLPTRISKLSSLER 848
LE LD+ V ++ NL+ L Q+S I T + L++L+
Sbjct: 175 LERLDISSNKVSDISVLAKLTNLESLIATNNQISDI-------------TPLGILTNLDE 221
Query: 849 LQLSGCEIKEIPEDIDCLSSLEVLDLSGSKIEILPTSIGQLSRLRQLNLLDCNMLQSIPE 908
L L+G ++K+I + L++L LDL+ ++I L G L++L +L L N + +I
Sbjct: 222 LSLNGNQLKDIGT-LASLTNLTDLDLANNQISNLAPLSG-LTKLTELK-LGANQISNISP 278
Query: 909 LPRGLLRL 916
L GL L
Sbjct: 279 L-AGLTAL 285
>pdb|2OMU|A Chain A, Crystal Structure Of Inla G194s+s Y369s/hec1 Complex
Length = 462
Score = 32.0 bits (71), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 53/188 (28%), Positives = 87/188 (46%), Gaps = 32/188 (17%)
Query: 739 SSIECLTNLETLDLRLCERLKRVSTSICKLKSLGSLL----LAFCSNLEGFPEILEKMEL 794
+ I+ L NL L+ RL+ S +I + +L L L+F SN + L +
Sbjct: 120 TDIDPLKNLTNLN-----RLELSSNTISDISALSGLTSLQQLSFSSNQVTDLKPLANLTT 174
Query: 795 LETLDLERTGVKELP--PSFENLQGL----RQLSLIGCSELKCSGWVLPTRISKLSSLER 848
LE LD+ V ++ NL+ L Q+S I T + L++L+
Sbjct: 175 LERLDISSNKVSDISVLAKLTNLESLIATNNQISDI-------------TPLGILTNLDE 221
Query: 849 LQLSGCEIKEIPEDIDCLSSLEVLDLSGSKIEILPTSIGQLSRLRQLNLLDCNMLQSIPE 908
L L+G ++K+I + L++L LDL+ ++I L G L++L +L L N + +I
Sbjct: 222 LSLNGNQLKDIGT-LASLTNLTDLDLANNQISNLAPLSG-LTKLTELK-LGANQISNISP 278
Query: 909 LPRGLLRL 916
L GL L
Sbjct: 279 L-AGLTAL 285
>pdb|4AY9|X Chain X, Structure Of Follicle-Stimulating Hormone In Complex With
The Entire Ectodomain Of Its Receptor
pdb|4AY9|Y Chain Y, Structure Of Follicle-Stimulating Hormone In Complex With
The Entire Ectodomain Of Its Receptor
pdb|4AY9|Z Chain Z, Structure Of Follicle-Stimulating Hormone In Complex With
The Entire Ectodomain Of Its Receptor
Length = 350
Score = 31.2 bits (69), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 50/226 (22%), Positives = 96/226 (42%), Gaps = 30/226 (13%)
Query: 714 LTEFPQ-ISGKVVKLRLWYTPIEEV-PSSIECLTNLETLDLRLCERLKRVSTSI-CKLKS 770
+TE P + ++LR T + + + +LE +++ + L+ + + L
Sbjct: 21 VTEIPSDLPRNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPK 80
Query: 771 LGSLLLAFCSNLEGF-PEILEKMELLETLDLERTGVKELPPSFE---------------N 814
L + + +NL PE + + L+ L + TG+K LP + N
Sbjct: 81 LHEIRIEKANNLLYINPEAFQNLPNLQYLLISNTGIKHLPDVHKIHSLQKVLLDIQDNIN 140
Query: 815 LQGLRQLSLIGCSELKCSGWVLPTRISKL-------SSLERLQLS-GCEIKEIPEDI-DC 865
+ + + S +G S W+ I ++ + L+ L LS ++E+P D+
Sbjct: 141 IHTIERNSFVGLSFESVILWLNKNGIQEIHNSAFNGTQLDELNLSDNNNLEELPNDVFHG 200
Query: 866 LSSLEVLDLSGSKIEILPTSIGQLSRLRQLNLLDCNMLQSIPELPR 911
S +LD+S ++I LP S G L L++L L+ +P L +
Sbjct: 201 ASGPVILDISRTRIHSLP-SYG-LENLKKLRARSTYNLKKLPTLEK 244
>pdb|2OMX|A Chain A, Crystal Structure Of Inla S192n G194s+sHEC1 COMPLEX
Length = 462
Score = 31.2 bits (69), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 53/188 (28%), Positives = 86/188 (45%), Gaps = 32/188 (17%)
Query: 739 SSIECLTNLETLDLRLCERLKRVSTSICKLKSLGSLL----LAFCSNLEGFPEILEKMEL 794
+ I+ L NL L+ RL+ S +I + +L L L F SN + L +
Sbjct: 120 TDIDPLKNLTNLN-----RLELSSNTISDISALSGLTSLQQLNFSSNQVTDLKPLANLTT 174
Query: 795 LETLDLERTGVKELP--PSFENLQGL----RQLSLIGCSELKCSGWVLPTRISKLSSLER 848
LE LD+ V ++ NL+ L Q+S I T + L++L+
Sbjct: 175 LERLDISSNKVSDISVLAKLTNLESLIATNNQISDI-------------TPLGILTNLDE 221
Query: 849 LQLSGCEIKEIPEDIDCLSSLEVLDLSGSKIEILPTSIGQLSRLRQLNLLDCNMLQSIPE 908
L L+G ++K+I + L++L LDL+ ++I L G L++L +L L N + +I
Sbjct: 222 LSLNGNQLKDIGT-LASLTNLTDLDLANNQISNLAPLSG-LTKLTELK-LGANQISNISP 278
Query: 909 LPRGLLRL 916
L GL L
Sbjct: 279 L-AGLTAL 285
>pdb|1XWD|C Chain C, Crystal Structure Of Human Follicle Stimulating Hormone
Complexed With Its Receptor
pdb|1XWD|F Chain F, Crystal Structure Of Human Follicle Stimulating Hormone
Complexed With Its Receptor
Length = 252
Score = 30.8 bits (68), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 50/226 (22%), Positives = 96/226 (42%), Gaps = 30/226 (13%)
Query: 714 LTEFPQ-ISGKVVKLRLWYTPIEEV-PSSIECLTNLETLDLRLCERLKRVSTSI-CKLKS 770
+TE P + ++LR T + + + +LE +++ + L+ + + L
Sbjct: 21 VTEIPSDLPRNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPK 80
Query: 771 LGSLLLAFCSNLEGF-PEILEKMELLETLDLERTGVKELPPSFE---------------N 814
L + + +NL PE + + L+ L + TG+K LP + N
Sbjct: 81 LHEIRIEKANNLLYINPEAFQNLPNLQYLLISNTGIKHLPDVHKIHSLQKVLLDIQDNIN 140
Query: 815 LQGLRQLSLIGCSELKCSGWVLPTRISKL-------SSLERLQLS-GCEIKEIPEDI-DC 865
+ + + S +G S W+ I ++ + L+ L LS ++E+P D+
Sbjct: 141 IHTIERNSFVGLSFESVILWLNKNGIQEIHNCAFNGTQLDELNLSDNNNLEELPNDVFHG 200
Query: 866 LSSLEVLDLSGSKIEILPTSIGQLSRLRQLNLLDCNMLQSIPELPR 911
S +LD+S ++I LP S G L L++L L+ +P L +
Sbjct: 201 ASGPVILDISRTRIHSLP-SYG-LENLKKLRARSTYNLKKLPTLEK 244
>pdb|3T6Q|A Chain A, Crystal Structure Of Mouse Rp105MD-1 Complex
pdb|3T6Q|B Chain B, Crystal Structure Of Mouse Rp105MD-1 Complex
Length = 606
Score = 29.6 bits (65), Expect = 9.0, Method: Compositional matrix adjust.
Identities = 34/112 (30%), Positives = 51/112 (45%), Gaps = 17/112 (15%)
Query: 795 LETLDLERTGVKELPPSFENLQGLRQLSLIG-----CSELKCSGWVLPTRISKLSSLERL 849
L+ LDL T + ELP L L++L L ++ S + T +S + +RL
Sbjct: 280 LQELDLTATHLSELPSGLVGLSTLKKLVLSANKFENLCQISASNFPSLTHLSIKGNTKRL 339
Query: 850 QL-SGCEIKEIPEDIDCLSSLEVLDLSGSKIEI---LPTSIGQLSRLRQLNL 897
+L +GC ++ L +L LDLS IE + LS L+ LNL
Sbjct: 340 ELGTGC--------LENLENLRELDLSHDDIETSDCCNLQLRNLSHLQSLNL 383
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.323 0.140 0.425
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 27,313,162
Number of Sequences: 62578
Number of extensions: 1141624
Number of successful extensions: 3039
Number of sequences better than 100.0: 63
Number of HSP's better than 100.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 57
Number of HSP's that attempted gapping in prelim test: 2962
Number of HSP's gapped (non-prelim): 122
length of query: 951
length of database: 14,973,337
effective HSP length: 108
effective length of query: 843
effective length of database: 8,214,913
effective search space: 6925171659
effective search space used: 6925171659
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 56 (26.2 bits)