Query 002220
Match_columns 951
No_of_seqs 781 out of 5794
Neff 9.9
Searched_HMMs 46136
Date Thu Mar 28 19:14:42 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/002220.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/002220hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN03210 Resistant to P. syrin 100.0 1E-125 3E-130 1180.4 81.5 887 1-907 1-910 (1153)
2 KOG4658 Apoptotic ATPase [Sign 100.0 3.7E-60 8E-65 558.4 31.2 626 189-931 161-849 (889)
3 PLN03194 putative disease resi 100.0 6.1E-40 1.3E-44 303.2 16.3 158 2-176 18-177 (187)
4 PF00931 NB-ARC: NB-ARC domain 100.0 2.9E-37 6.2E-42 331.8 13.5 265 191-461 1-281 (287)
5 PLN00113 leucine-rich repeat r 100.0 1.5E-33 3.2E-38 354.6 25.3 432 502-945 42-512 (968)
6 PLN00113 leucine-rich repeat r 100.0 1.3E-31 2.8E-36 337.1 22.9 355 587-946 213-585 (968)
7 KOG4194 Membrane glycoprotein 100.0 3.4E-29 7.4E-34 263.9 4.7 339 533-907 82-433 (873)
8 KOG0444 Cytoskeletal regulator 99.9 7.4E-30 1.6E-34 270.1 -3.8 344 546-907 25-379 (1255)
9 KOG0444 Cytoskeletal regulator 99.9 9.4E-30 2E-34 269.3 -6.5 360 552-929 6-380 (1255)
10 KOG4194 Membrane glycoprotein 99.9 4.2E-28 9.1E-33 255.7 4.5 335 587-947 103-454 (873)
11 KOG0618 Serine/threonine phosp 99.9 1.9E-27 4.2E-32 264.5 -6.6 391 533-943 25-487 (1081)
12 PLN03210 Resistant to P. syrin 99.9 2.4E-23 5.1E-28 261.5 28.1 333 582-929 554-911 (1153)
13 KOG0472 Leucine-rich repeat pr 99.9 1.1E-27 2.5E-32 241.9 -9.4 244 547-806 62-310 (565)
14 KOG0472 Leucine-rich repeat pr 99.9 1E-26 2.2E-31 235.1 -5.2 368 533-922 72-539 (565)
15 KOG0618 Serine/threonine phosp 99.8 1E-22 2.2E-27 227.2 -3.4 393 535-945 4-465 (1081)
16 PF01582 TIR: TIR domain; Int 99.8 1.1E-20 2.3E-25 177.9 3.9 133 13-145 1-140 (141)
17 PRK15387 E3 ubiquitin-protein 99.8 2.9E-19 6.3E-24 207.4 15.8 256 590-905 205-460 (788)
18 smart00255 TIR Toll - interleu 99.8 9.1E-19 2E-23 165.7 12.2 136 10-148 1-138 (140)
19 PRK15387 E3 ubiquitin-protein 99.8 2.7E-18 5.9E-23 199.4 16.8 236 587-880 223-458 (788)
20 PRK15370 E3 ubiquitin-protein 99.7 1.9E-17 4.1E-22 194.0 12.2 244 588-879 180-427 (754)
21 PRK15370 E3 ubiquitin-protein 99.7 5.1E-17 1.1E-21 190.4 10.9 250 554-857 179-428 (754)
22 KOG4237 Extracellular matrix p 99.7 4.7E-18 1E-22 172.7 -2.2 317 580-903 61-477 (498)
23 KOG0617 Ras suppressor protein 99.6 1E-17 2.2E-22 150.5 -5.3 177 723-906 34-215 (264)
24 PF13676 TIR_2: TIR domain; PD 99.5 2.6E-15 5.6E-20 132.9 3.7 88 13-107 1-88 (102)
25 KOG4237 Extracellular matrix p 99.5 3E-16 6.4E-21 159.8 -3.3 145 591-756 51-199 (498)
26 KOG0617 Ras suppressor protein 99.5 1.5E-16 3.2E-21 143.1 -4.9 172 741-921 29-200 (264)
27 cd00116 LRR_RI Leucine-rich re 99.5 3.2E-15 7E-20 163.7 -0.3 161 741-901 132-318 (319)
28 cd00116 LRR_RI Leucine-rich re 99.4 1.6E-14 3.4E-19 158.3 0.9 159 745-903 108-291 (319)
29 PRK04841 transcriptional regul 99.4 1.3E-11 2.7E-16 155.4 26.1 298 180-499 8-335 (903)
30 KOG4658 Apoptotic ATPase [Sign 99.2 4.7E-12 1E-16 151.3 4.2 126 551-687 521-651 (889)
31 COG2909 MalT ATP-dependent tra 99.1 1.8E-09 4E-14 122.2 19.5 300 180-500 13-342 (894)
32 PRK00411 cdc6 cell division co 99.1 5.3E-09 1.1E-13 117.8 22.2 249 182-443 26-308 (394)
33 PF01637 Arch_ATPase: Archaeal 99.1 1.4E-10 3E-15 120.6 8.7 198 188-390 1-233 (234)
34 TIGR00635 ruvB Holliday juncti 99.1 2.1E-09 4.6E-14 116.3 17.2 262 186-478 4-289 (305)
35 KOG1259 Nischarin, modulator o 99.1 1.9E-11 4.2E-16 120.3 0.3 132 765-904 280-413 (490)
36 KOG0532 Leucine-rich repeat (L 99.1 5.3E-12 1.2E-16 135.0 -4.3 167 726-901 79-245 (722)
37 PRK00080 ruvB Holliday junctio 99.1 1.7E-09 3.7E-14 117.6 14.1 272 182-478 21-310 (328)
38 KOG0532 Leucine-rich repeat (L 99.0 2E-11 4.3E-16 130.7 -1.3 180 713-901 86-271 (722)
39 PF05729 NACHT: NACHT domain 99.0 1.9E-09 4.1E-14 105.3 12.0 144 210-360 1-163 (166)
40 COG4886 Leucine-rich repeat (L 99.0 4.4E-10 9.5E-15 126.7 7.9 177 723-907 117-294 (394)
41 TIGR02928 orc1/cdc6 family rep 99.0 3.3E-08 7.2E-13 110.1 22.3 248 182-441 11-298 (365)
42 TIGR03015 pepcterm_ATPase puta 99.0 1.4E-08 3E-13 107.9 18.1 180 209-395 43-242 (269)
43 KOG3207 Beta-tubulin folding c 99.0 9.5E-11 2.1E-15 121.9 0.7 180 722-904 146-340 (505)
44 KOG1909 Ran GTPase-activating 99.0 2.9E-11 6.2E-16 122.5 -3.2 180 723-902 93-310 (382)
45 KOG1259 Nischarin, modulator o 99.0 1.7E-10 3.7E-15 113.8 1.3 105 790-901 281-385 (490)
46 COG3899 Predicted ATPase [Gene 98.9 1.6E-08 3.6E-13 121.8 17.5 308 187-497 1-387 (849)
47 COG4886 Leucine-rich repeat (L 98.9 1.6E-09 3.6E-14 122.0 8.4 153 723-883 141-293 (394)
48 PF14580 LRR_9: Leucine-rich r 98.9 9.5E-10 2.1E-14 105.3 4.8 109 789-904 15-127 (175)
49 KOG3207 Beta-tubulin folding c 98.9 3.1E-10 6.8E-15 118.1 0.6 193 723-919 122-334 (505)
50 COG2256 MGS1 ATPase related to 98.8 4.5E-08 9.7E-13 102.0 14.0 172 186-387 24-208 (436)
51 PRK06893 DNA replication initi 98.8 5E-08 1.1E-12 99.8 13.5 150 209-391 39-203 (229)
52 KOG1909 Ran GTPase-activating 98.7 1.4E-09 2.9E-14 110.6 -1.0 160 743-902 90-282 (382)
53 KOG3678 SARM protein (with ste 98.7 8.5E-08 1.8E-12 100.0 11.2 93 8-106 610-710 (832)
54 KOG4341 F-box protein containi 98.7 8E-10 1.7E-14 114.6 -4.9 252 652-905 162-441 (483)
55 PF14580 LRR_9: Leucine-rich r 98.7 1.1E-08 2.4E-13 98.0 3.0 125 551-685 17-147 (175)
56 PTZ00112 origin recognition co 98.6 1.2E-06 2.6E-11 100.6 19.1 244 182-440 751-1029(1164)
57 PRK13342 recombination factor 98.6 4.7E-07 1E-11 101.6 15.4 180 182-392 8-197 (413)
58 PRK15386 type III secretion pr 98.6 7.9E-08 1.7E-12 103.1 8.3 155 765-942 48-210 (426)
59 COG3903 Predicted ATPase [Gene 98.6 4.3E-08 9.4E-13 103.0 4.8 278 208-497 13-315 (414)
60 PF05496 RuvB_N: Holliday junc 98.5 1.4E-06 3.1E-11 85.1 13.9 180 182-393 20-223 (233)
61 TIGR03420 DnaA_homol_Hda DnaA 98.5 1.2E-06 2.6E-11 90.3 13.6 173 186-393 15-203 (226)
62 PRK15386 type III secretion pr 98.5 5E-07 1.1E-11 97.1 10.7 158 742-924 49-213 (426)
63 PRK07471 DNA polymerase III su 98.5 1.3E-05 2.8E-10 87.3 21.5 202 181-392 14-239 (365)
64 PRK14961 DNA polymerase III su 98.5 8.8E-06 1.9E-10 89.6 19.9 187 182-388 12-217 (363)
65 PRK07003 DNA polymerase III su 98.5 6.8E-06 1.5E-10 94.3 18.8 195 182-390 12-220 (830)
66 PRK12402 replication factor C 98.5 3.2E-06 7E-11 93.1 15.8 197 182-388 11-223 (337)
67 PRK14963 DNA polymerase III su 98.4 2.6E-06 5.7E-11 96.6 14.6 193 182-388 10-214 (504)
68 KOG4341 F-box protein containi 98.4 1.3E-08 2.7E-13 105.9 -4.0 272 628-899 161-461 (483)
69 PLN03025 replication factor C 98.4 5.1E-06 1.1E-10 90.0 16.0 183 182-386 9-195 (319)
70 PF13173 AAA_14: AAA domain 98.4 1.8E-06 3.9E-11 79.6 10.6 121 209-351 2-126 (128)
71 PRK04195 replication factor C 98.4 8.7E-06 1.9E-10 93.4 18.5 181 182-389 10-200 (482)
72 PRK14960 DNA polymerase III su 98.4 6.2E-06 1.3E-10 93.6 16.6 182 182-388 11-216 (702)
73 TIGR01242 26Sp45 26S proteasom 98.4 2.6E-06 5.6E-11 94.2 12.6 173 184-385 120-328 (364)
74 KOG2120 SCF ubiquitin ligase, 98.4 1E-08 2.2E-13 101.6 -5.7 106 722-827 185-297 (419)
75 PF13855 LRR_8: Leucine rich r 98.4 3.2E-07 6.9E-12 72.0 3.7 58 844-901 1-60 (61)
76 PRK12323 DNA polymerase III su 98.4 9.5E-06 2.1E-10 91.9 16.8 198 182-389 12-223 (700)
77 PRK00440 rfc replication facto 98.4 8.7E-06 1.9E-10 88.9 16.4 183 183-388 14-200 (319)
78 PRK14949 DNA polymerase III su 98.4 1.1E-05 2.4E-10 94.5 17.8 187 182-388 12-217 (944)
79 PRK08727 hypothetical protein; 98.4 7.4E-06 1.6E-10 84.1 14.6 169 185-388 18-201 (233)
80 PLN03150 hypothetical protein; 98.4 9.5E-07 2.1E-11 104.3 8.9 109 795-907 420-532 (623)
81 KOG0531 Protein phosphatase 1, 98.3 8.4E-08 1.8E-12 108.2 -0.0 241 606-880 70-318 (414)
82 KOG0531 Protein phosphatase 1, 98.3 7E-08 1.5E-12 108.8 -1.1 268 628-929 69-353 (414)
83 PRK14956 DNA polymerase III su 98.3 3.9E-06 8.4E-11 92.7 12.3 192 182-386 14-217 (484)
84 PF13191 AAA_16: AAA ATPase do 98.3 6.3E-07 1.4E-11 89.2 5.7 50 187-236 1-51 (185)
85 PRK09112 DNA polymerase III su 98.3 2.1E-05 4.5E-10 85.2 17.1 198 181-392 18-241 (351)
86 PRK06645 DNA polymerase III su 98.3 1.5E-05 3.3E-10 90.1 16.6 186 182-387 17-225 (507)
87 PRK08691 DNA polymerase III su 98.3 7.7E-06 1.7E-10 93.8 14.2 193 182-388 12-217 (709)
88 PRK14957 DNA polymerase III su 98.3 2E-05 4.2E-10 89.7 17.3 185 182-391 12-221 (546)
89 PRK05564 DNA polymerase III su 98.3 1.9E-05 4.1E-10 85.4 16.5 178 186-391 4-190 (313)
90 PRK07940 DNA polymerase III su 98.3 2.3E-05 5E-10 86.1 17.2 178 186-391 5-213 (394)
91 PTZ00202 tuzin; Provisional 98.3 4.7E-06 1E-10 88.8 11.2 167 180-359 256-433 (550)
92 PLN03150 hypothetical protein; 98.3 1.7E-06 3.6E-11 102.2 8.8 113 817-933 419-537 (623)
93 KOG2120 SCF ubiquitin ligase, 98.3 2.1E-08 4.5E-13 99.4 -6.2 175 608-802 185-372 (419)
94 COG1474 CDC6 Cdc6-related prot 98.3 2.7E-05 5.9E-10 84.6 17.0 202 182-391 13-238 (366)
95 PRK14962 DNA polymerase III su 98.3 2.1E-05 4.5E-10 88.6 16.3 187 182-393 10-221 (472)
96 PRK09087 hypothetical protein; 98.3 1.8E-05 3.8E-10 80.5 14.3 138 209-390 44-194 (226)
97 cd00009 AAA The AAA+ (ATPases 98.2 7.2E-06 1.6E-10 78.1 10.7 123 189-329 1-131 (151)
98 PRK08903 DnaA regulatory inact 98.2 1.6E-05 3.4E-10 81.9 13.8 173 185-395 17-203 (227)
99 PRK07994 DNA polymerase III su 98.2 2.2E-05 4.7E-10 90.8 15.8 182 182-388 12-217 (647)
100 PRK14964 DNA polymerase III su 98.2 2.9E-05 6.3E-10 87.0 16.3 181 182-387 9-213 (491)
101 PRK05642 DNA replication initi 98.2 2.7E-05 5.9E-10 79.9 14.9 150 209-391 45-208 (234)
102 PF00308 Bac_DnaA: Bacterial d 98.2 2.8E-05 6E-10 78.8 14.6 158 208-389 33-206 (219)
103 TIGR02397 dnaX_nterm DNA polym 98.2 4.5E-05 9.7E-10 84.7 17.7 186 182-392 10-219 (355)
104 PRK13341 recombination factor 98.2 2.1E-05 4.6E-10 92.9 15.4 171 183-385 25-211 (725)
105 PRK08084 DNA replication initi 98.2 3E-05 6.5E-10 79.7 14.8 170 186-390 22-208 (235)
106 PRK05896 DNA polymerase III su 98.2 1.9E-05 4.2E-10 89.7 14.2 191 182-386 12-215 (605)
107 PRK14951 DNA polymerase III su 98.2 6.4E-05 1.4E-09 86.8 18.3 194 182-388 12-222 (618)
108 PF13401 AAA_22: AAA domain; P 98.2 3.9E-06 8.4E-11 78.1 7.0 113 208-327 3-125 (131)
109 KOG1859 Leucine-rich repeat pr 98.2 3.2E-08 7E-13 109.3 -8.1 129 723-858 165-293 (1096)
110 PRK14958 DNA polymerase III su 98.2 4.2E-05 9.1E-10 87.2 16.5 182 182-388 12-217 (509)
111 TIGR00678 holB DNA polymerase 98.2 6.6E-05 1.4E-09 74.6 16.1 90 289-387 95-187 (188)
112 PF14516 AAA_35: AAA-like doma 98.1 0.00029 6.2E-09 76.5 21.6 206 180-398 5-246 (331)
113 PF13855 LRR_8: Leucine rich r 98.1 2.1E-06 4.6E-11 67.3 3.7 12 813-824 46-57 (61)
114 KOG1859 Leucine-rich repeat pr 98.1 4.1E-08 8.9E-13 108.5 -8.3 152 738-900 102-264 (1096)
115 PRK14969 DNA polymerase III su 98.1 4.2E-05 9.1E-10 87.9 15.5 180 182-386 12-215 (527)
116 KOG2028 ATPase related to the 98.1 6.8E-06 1.5E-10 84.1 7.8 149 185-359 137-293 (554)
117 PRK14955 DNA polymerase III su 98.1 5.4E-05 1.2E-09 84.4 15.5 199 182-388 12-225 (397)
118 PRK03992 proteasome-activating 98.1 3.9E-05 8.4E-10 85.2 14.1 172 184-384 129-336 (389)
119 PRK14087 dnaA chromosomal repl 98.1 4.5E-05 9.7E-10 85.9 14.2 164 209-392 141-320 (450)
120 TIGR02881 spore_V_K stage V sp 98.0 6.1E-05 1.3E-09 79.1 13.8 150 187-361 7-192 (261)
121 PRK09111 DNA polymerase III su 98.0 0.00022 4.8E-09 82.6 19.3 195 182-389 20-231 (598)
122 PF08937 DUF1863: MTH538 TIR-l 98.0 9.6E-06 2.1E-10 74.7 6.6 91 11-106 1-108 (130)
123 PRK07764 DNA polymerase III su 98.0 0.0002 4.2E-09 86.0 19.1 186 182-387 11-217 (824)
124 PRK14970 DNA polymerase III su 98.0 0.00015 3.2E-09 80.6 16.6 182 182-387 13-205 (367)
125 KOG2982 Uncharacterized conser 98.0 1.9E-06 4.2E-11 85.7 1.3 185 722-908 71-267 (418)
126 PHA02544 44 clamp loader, smal 98.0 0.00012 2.6E-09 79.7 15.2 151 182-358 17-171 (316)
127 PRK14959 DNA polymerase III su 98.0 0.00012 2.6E-09 83.9 15.3 188 182-394 12-224 (624)
128 PRK14952 DNA polymerase III su 98.0 0.00016 3.4E-09 83.3 16.3 191 182-386 9-214 (584)
129 PRK08451 DNA polymerase III su 98.0 0.00031 6.7E-09 79.6 17.9 188 182-389 10-216 (535)
130 PRK06620 hypothetical protein; 97.9 0.00014 3E-09 73.3 13.3 132 210-387 45-185 (214)
131 PRK07133 DNA polymerase III su 97.9 0.00019 4.1E-09 83.6 15.7 191 182-386 14-214 (725)
132 TIGR02903 spore_lon_C ATP-depe 97.9 6.6E-05 1.4E-09 88.0 12.2 50 182-233 150-199 (615)
133 PRK14950 DNA polymerase III su 97.9 0.00019 4.1E-09 84.1 15.8 196 182-390 12-220 (585)
134 KOG0989 Replication factor C, 97.9 0.00014 3E-09 73.6 12.4 183 182-384 32-223 (346)
135 PRK06305 DNA polymerase III su 97.9 0.00022 4.7E-09 80.4 15.3 185 182-386 13-217 (451)
136 PRK14953 DNA polymerase III su 97.9 0.00053 1.2E-08 77.8 18.4 183 182-389 12-218 (486)
137 PRK14088 dnaA chromosomal repl 97.9 0.00033 7.1E-09 78.9 16.7 157 209-388 130-302 (440)
138 KOG2982 Uncharacterized conser 97.9 4.7E-06 1E-10 83.1 1.7 101 588-688 47-156 (418)
139 TIGR00362 DnaA chromosomal rep 97.9 0.00031 6.7E-09 79.0 16.5 156 209-388 136-307 (405)
140 PRK14954 DNA polymerase III su 97.9 8.6E-05 1.9E-09 86.0 12.2 197 182-386 12-223 (620)
141 TIGR03689 pup_AAA proteasome A 97.9 0.00026 5.6E-09 79.8 15.5 158 184-360 180-378 (512)
142 TIGR02639 ClpA ATP-dependent C 97.9 9.1E-05 2E-09 89.4 12.7 66 164-235 164-229 (731)
143 PF12799 LRR_4: Leucine Rich r 97.8 1.9E-05 4.2E-10 56.4 3.9 39 845-883 2-40 (44)
144 PTZ00454 26S protease regulato 97.8 0.00027 5.8E-09 78.0 14.6 174 183-385 142-351 (398)
145 TIGR03345 VI_ClpV1 type VI sec 97.8 0.00031 6.7E-09 85.4 16.3 67 164-236 169-235 (852)
146 PRK00149 dnaA chromosomal repl 97.8 0.00034 7.3E-09 79.8 15.7 156 209-388 148-319 (450)
147 PRK09376 rho transcription ter 97.8 1.9E-05 4.1E-10 84.1 5.0 92 209-303 169-269 (416)
148 KOG2543 Origin recognition com 97.8 0.00084 1.8E-08 70.2 16.5 169 184-360 4-193 (438)
149 PRK14948 DNA polymerase III su 97.8 0.00049 1.1E-08 80.4 16.8 196 182-390 12-221 (620)
150 TIGR02880 cbbX_cfxQ probable R 97.8 0.00051 1.1E-08 72.7 15.4 128 211-360 60-208 (284)
151 COG2255 RuvB Holliday junction 97.8 0.00062 1.3E-08 68.3 14.3 256 182-478 22-311 (332)
152 CHL00181 cbbX CbbX; Provisiona 97.8 0.00074 1.6E-08 71.4 16.1 128 210-361 60-210 (287)
153 PRK14971 DNA polymerase III su 97.8 0.00073 1.6E-08 79.0 17.3 180 182-387 13-218 (614)
154 PTZ00361 26 proteosome regulat 97.8 0.00015 3.2E-09 80.5 11.0 153 185-362 182-369 (438)
155 PRK12422 chromosomal replicati 97.8 0.00043 9.3E-09 77.7 14.8 152 209-384 141-306 (445)
156 PRK05707 DNA polymerase III su 97.7 0.0011 2.3E-08 71.5 16.9 95 290-391 106-203 (328)
157 PRK06647 DNA polymerase III su 97.7 0.0011 2.4E-08 76.6 18.1 188 182-388 12-217 (563)
158 PRK05563 DNA polymerase III su 97.7 0.00096 2.1E-08 77.4 17.7 192 182-387 12-216 (559)
159 cd01128 rho_factor Transcripti 97.7 4E-05 8.6E-10 78.6 5.5 92 208-302 15-115 (249)
160 PF12799 LRR_4: Leucine Rich r 97.7 4.6E-05 1E-09 54.5 3.9 42 867-909 1-42 (44)
161 PF00004 AAA: ATPase family as 97.7 0.0003 6.6E-09 65.3 10.2 24 212-235 1-24 (132)
162 CHL00095 clpC Clp protease ATP 97.6 0.00042 9.2E-09 84.7 13.1 65 164-234 161-225 (821)
163 PRK14965 DNA polymerase III su 97.6 0.00087 1.9E-08 78.2 15.0 190 182-391 12-221 (576)
164 PRK14086 dnaA chromosomal repl 97.6 0.0011 2.5E-08 75.7 15.4 152 210-385 315-482 (617)
165 TIGR00767 rho transcription te 97.6 9.6E-05 2.1E-09 79.4 6.4 93 209-304 168-269 (415)
166 COG5238 RNA1 Ran GTPase-activa 97.6 2.5E-05 5.5E-10 77.0 1.8 137 765-901 88-253 (388)
167 COG0466 Lon ATP-dependent Lon 97.6 0.0032 6.9E-08 71.5 18.3 154 185-360 322-508 (782)
168 KOG3665 ZYG-1-like serine/thre 97.6 2.7E-05 5.8E-10 91.6 2.2 153 744-900 121-285 (699)
169 PRK07952 DNA replication prote 97.6 0.0011 2.5E-08 67.7 13.6 35 209-243 99-133 (244)
170 PF05673 DUF815: Protein of un 97.6 0.0031 6.7E-08 63.1 16.0 55 183-237 24-80 (249)
171 PRK12377 putative replication 97.6 0.0017 3.6E-08 66.7 14.6 35 209-243 101-135 (248)
172 CHL00176 ftsH cell division pr 97.6 0.00099 2.1E-08 78.0 14.4 174 184-384 181-387 (638)
173 PRK10865 protein disaggregatio 97.5 0.00066 1.4E-08 82.9 13.5 66 164-235 160-225 (857)
174 PRK08116 hypothetical protein; 97.5 0.00052 1.1E-08 71.8 10.6 102 210-328 115-221 (268)
175 TIGR03346 chaperone_ClpB ATP-d 97.5 0.00068 1.5E-08 83.2 13.0 66 164-235 155-220 (852)
176 COG1222 RPT1 ATP-dependent 26S 97.5 0.0012 2.7E-08 68.4 12.6 171 186-385 151-357 (406)
177 PRK11034 clpA ATP-dependent Cl 97.5 0.00058 1.3E-08 81.4 11.7 65 164-234 168-232 (758)
178 KOG4579 Leucine-rich repeat (L 97.5 4.3E-06 9.3E-11 73.7 -4.4 90 789-883 49-139 (177)
179 PF08357 SEFIR: SEFIR domain; 97.5 0.00013 2.8E-09 69.4 5.2 65 12-76 2-70 (150)
180 COG5238 RNA1 Ran GTPase-activa 97.5 1.8E-05 4E-10 77.9 -0.7 181 741-922 26-253 (388)
181 PF05621 TniB: Bacterial TniB 97.5 0.0021 4.5E-08 66.5 14.0 193 186-389 34-259 (302)
182 KOG4579 Leucine-rich repeat (L 97.5 6.4E-06 1.4E-10 72.6 -3.6 104 794-902 28-135 (177)
183 PRK07399 DNA polymerase III su 97.5 0.0038 8.3E-08 66.8 16.5 193 186-391 4-221 (314)
184 COG0542 clpA ATP-binding subun 97.5 0.00066 1.4E-08 79.1 11.4 119 186-314 491-619 (786)
185 KOG1644 U2-associated snRNP A' 97.5 0.0002 4.3E-09 68.0 5.8 86 789-877 60-150 (233)
186 KOG2227 Pre-initiation complex 97.5 0.0013 2.9E-08 70.5 12.4 174 183-361 147-339 (529)
187 TIGR00602 rad24 checkpoint pro 97.4 0.00063 1.4E-08 78.9 10.3 53 182-234 80-135 (637)
188 TIGR01241 FtsH_fam ATP-depende 97.4 0.0012 2.6E-08 76.2 12.6 174 184-385 53-260 (495)
189 KOG3665 ZYG-1-like serine/thre 97.3 3.4E-05 7.4E-10 90.8 -1.0 126 700-826 147-285 (699)
190 PRK08769 DNA polymerase III su 97.3 0.011 2.4E-07 63.0 18.0 95 289-392 112-209 (319)
191 PRK08181 transposase; Validate 97.3 0.00088 1.9E-08 69.6 9.3 34 210-243 107-140 (269)
192 TIGR02639 ClpA ATP-dependent C 97.3 0.0022 4.9E-08 77.5 14.1 115 185-312 453-577 (731)
193 TIGR02640 gas_vesic_GvpN gas v 97.3 0.0027 5.9E-08 66.5 13.0 27 210-236 22-48 (262)
194 KOG1644 U2-associated snRNP A' 97.3 0.00042 9.2E-09 65.8 5.6 103 792-899 41-149 (233)
195 COG0593 DnaA ATPase involved i 97.3 0.0053 1.1E-07 66.8 14.7 132 208-362 112-259 (408)
196 TIGR00763 lon ATP-dependent pr 97.3 0.012 2.5E-07 71.8 19.3 52 186-237 320-375 (775)
197 PRK10787 DNA-binding ATP-depen 97.3 0.013 2.9E-07 70.6 19.3 157 186-360 322-506 (784)
198 PRK06526 transposase; Provisio 97.3 0.0027 5.8E-08 65.7 11.8 28 209-236 98-125 (254)
199 smart00382 AAA ATPases associa 97.2 0.00096 2.1E-08 62.7 7.8 34 210-243 3-36 (148)
200 COG1373 Predicted ATPase (AAA+ 97.2 0.0043 9.3E-08 68.9 13.9 151 211-392 39-193 (398)
201 PRK10865 protein disaggregatio 97.2 0.0032 6.9E-08 77.1 14.0 133 185-327 567-720 (857)
202 TIGR03346 chaperone_ClpB ATP-d 97.2 0.0035 7.7E-08 77.0 14.4 133 185-327 564-717 (852)
203 TIGR01243 CDC48 AAA family ATP 97.2 0.0038 8.2E-08 75.8 14.2 52 185-236 177-239 (733)
204 TIGR03345 VI_ClpV1 type VI sec 97.2 0.0019 4.1E-08 78.8 11.1 118 186-313 566-693 (852)
205 PRK10536 hypothetical protein; 97.2 0.0029 6.3E-08 64.1 10.5 53 186-242 55-109 (262)
206 PRK00771 signal recognition pa 97.1 0.016 3.6E-07 64.5 17.3 29 208-236 94-122 (437)
207 TIGR01243 CDC48 AAA family ATP 97.1 0.0054 1.2E-07 74.6 14.8 171 186-385 453-657 (733)
208 PRK08058 DNA polymerase III su 97.1 0.014 3.1E-07 63.3 16.5 151 187-359 6-181 (329)
209 CHL00195 ycf46 Ycf46; Provisio 97.1 0.0064 1.4E-07 68.9 14.0 175 185-385 227-429 (489)
210 KOG0991 Replication factor C, 97.1 0.0055 1.2E-07 59.5 11.2 50 182-233 23-72 (333)
211 PRK06871 DNA polymerase III su 97.1 0.018 3.9E-07 61.6 16.5 175 195-388 11-200 (325)
212 PLN00020 ribulose bisphosphate 97.1 0.0097 2.1E-07 63.1 14.0 31 207-237 146-176 (413)
213 PRK06090 DNA polymerase III su 97.1 0.052 1.1E-06 57.9 19.9 93 289-392 107-202 (319)
214 PRK09183 transposase/IS protei 97.1 0.002 4.3E-08 67.1 8.7 35 209-243 102-136 (259)
215 KOG2004 Mitochondrial ATP-depe 97.1 0.0054 1.2E-07 69.3 12.3 154 185-360 410-596 (906)
216 PF01695 IstB_IS21: IstB-like 97.0 0.00084 1.8E-08 65.4 5.4 35 209-243 47-81 (178)
217 PRK07993 DNA polymerase III su 97.0 0.015 3.2E-07 62.9 15.4 175 195-389 11-202 (334)
218 COG3267 ExeA Type II secretory 97.0 0.015 3.3E-07 58.0 14.0 178 207-393 49-247 (269)
219 KOG0741 AAA+-type ATPase [Post 97.0 0.013 2.7E-07 64.0 14.4 132 207-360 536-686 (744)
220 PRK11331 5-methylcytosine-spec 97.0 0.0017 3.6E-08 71.4 7.8 54 186-243 175-230 (459)
221 CHL00095 clpC Clp protease ATP 97.0 0.004 8.6E-08 76.4 11.8 133 185-327 508-661 (821)
222 PRK11889 flhF flagellar biosyn 97.0 0.027 5.8E-07 60.8 16.1 29 208-236 240-268 (436)
223 cd01131 PilT Pilus retraction 97.0 0.0021 4.6E-08 64.1 7.7 110 210-331 2-112 (198)
224 PRK08118 topology modulation p 96.9 0.0024 5.2E-08 61.7 7.3 33 210-242 2-37 (167)
225 PRK06921 hypothetical protein; 96.9 0.0031 6.7E-08 65.9 8.6 37 208-244 116-153 (266)
226 KOG2739 Leucine-rich acidic nu 96.9 0.00034 7.4E-09 69.6 1.1 62 843-904 64-130 (260)
227 PRK14974 cell division protein 96.9 0.0097 2.1E-07 63.9 11.8 29 208-236 139-167 (336)
228 PRK11608 pspF phage shock prot 96.8 0.024 5.1E-07 61.5 14.5 47 185-231 5-51 (326)
229 PRK06835 DNA replication prote 96.8 0.0054 1.2E-07 65.8 9.4 35 210-244 184-218 (329)
230 PRK06964 DNA polymerase III su 96.8 0.073 1.6E-06 57.4 17.9 92 289-391 131-225 (342)
231 COG2812 DnaX DNA polymerase II 96.8 0.011 2.3E-07 66.6 11.8 185 183-383 13-212 (515)
232 PRK11034 clpA ATP-dependent Cl 96.8 0.0053 1.2E-07 73.3 10.1 114 186-312 458-581 (758)
233 smart00763 AAA_PrkA PrkA AAA d 96.7 0.002 4.3E-08 68.8 5.5 48 187-234 52-103 (361)
234 PRK12608 transcription termina 96.7 0.004 8.7E-08 66.8 7.6 102 197-302 122-232 (380)
235 KOG2739 Leucine-rich acidic nu 96.7 0.00073 1.6E-08 67.3 1.8 106 792-900 42-153 (260)
236 TIGR01817 nifA Nif-specific re 96.7 0.038 8.3E-07 64.7 16.4 49 184-232 194-242 (534)
237 PF13177 DNA_pol3_delta2: DNA 96.7 0.023 5E-07 54.5 12.1 139 190-348 1-162 (162)
238 PF07728 AAA_5: AAA domain (dy 96.7 0.0018 3.9E-08 60.7 4.4 24 212-235 2-25 (139)
239 PF13207 AAA_17: AAA domain; P 96.7 0.0015 3.2E-08 59.5 3.7 23 211-233 1-23 (121)
240 PF04665 Pox_A32: Poxvirus A32 96.7 0.0013 2.7E-08 66.4 3.3 35 210-244 14-48 (241)
241 PF10443 RNA12: RNA12 protein; 96.7 0.45 9.8E-06 51.9 22.4 107 290-397 148-284 (431)
242 KOG1947 Leucine rich repeat pr 96.6 0.00032 7E-09 81.6 -1.3 34 630-663 187-223 (482)
243 TIGR00959 ffh signal recogniti 96.6 0.075 1.6E-06 59.2 17.0 27 208-234 98-124 (428)
244 PRK08939 primosomal protein Dn 96.6 0.01 2.2E-07 63.2 9.9 36 208-243 155-190 (306)
245 PHA00729 NTP-binding motif con 96.6 0.0051 1.1E-07 61.4 7.1 27 208-234 16-42 (226)
246 PRK07261 topology modulation p 96.6 0.0078 1.7E-07 58.4 8.3 23 211-233 2-24 (171)
247 KOG0730 AAA+-type ATPase [Post 96.6 0.019 4.1E-07 64.7 12.1 168 186-384 434-636 (693)
248 PRK05022 anaerobic nitric oxid 96.6 0.033 7.2E-07 64.5 14.8 50 184-233 185-234 (509)
249 PF00158 Sigma54_activat: Sigm 96.6 0.0053 1.2E-07 59.1 6.8 44 188-231 1-44 (168)
250 TIGR00064 ftsY signal recognit 96.6 0.0092 2E-07 62.5 9.1 37 207-243 70-106 (272)
251 TIGR02902 spore_lonB ATP-depen 96.6 0.019 4.2E-07 66.5 12.5 48 183-232 62-109 (531)
252 PF02562 PhoH: PhoH-like prote 96.6 0.006 1.3E-07 60.2 7.0 50 191-244 5-56 (205)
253 PRK08699 DNA polymerase III su 96.5 0.026 5.6E-07 60.8 12.4 86 291-387 114-202 (325)
254 cd00544 CobU Adenosylcobinamid 96.5 0.0064 1.4E-07 58.6 7.0 79 212-299 2-82 (169)
255 COG1223 Predicted ATPase (AAA+ 96.5 0.011 2.4E-07 58.5 8.5 169 185-384 120-318 (368)
256 cd01133 F1-ATPase_beta F1 ATP 96.5 0.0055 1.2E-07 63.2 6.8 93 209-304 69-177 (274)
257 KOG0733 Nuclear AAA ATPase (VC 96.5 0.03 6.5E-07 62.4 12.7 53 185-237 189-251 (802)
258 PRK15429 formate hydrogenlyase 96.5 0.049 1.1E-06 65.8 16.1 48 185-232 375-422 (686)
259 KOG2228 Origin recognition com 96.5 0.029 6.3E-07 58.0 11.7 174 184-360 22-219 (408)
260 PRK06696 uridine kinase; Valid 96.5 0.004 8.8E-08 63.6 5.8 46 191-236 3-49 (223)
261 PRK10867 signal recognition pa 96.5 0.063 1.4E-06 59.8 15.4 29 208-236 99-127 (433)
262 COG1618 Predicted nucleotide k 96.5 0.0025 5.3E-08 58.5 3.5 39 209-247 5-45 (179)
263 PF00448 SRP54: SRP54-type pro 96.5 0.0059 1.3E-07 60.5 6.6 35 209-243 1-35 (196)
264 TIGR02974 phageshock_pspF psp 96.5 0.038 8.3E-07 59.8 13.3 45 188-232 1-45 (329)
265 PF14532 Sigma54_activ_2: Sigm 96.5 0.0049 1.1E-07 57.6 5.7 44 189-232 1-44 (138)
266 COG1484 DnaC DNA replication p 96.5 0.0089 1.9E-07 61.9 8.0 36 208-243 104-139 (254)
267 cd01120 RecA-like_NTPases RecA 96.4 0.0053 1.1E-07 59.3 5.9 34 211-244 1-34 (165)
268 KOG2123 Uncharacterized conser 96.4 0.00015 3.3E-09 71.9 -5.0 84 816-906 19-104 (388)
269 KOG1514 Origin recognition com 96.4 0.071 1.5E-06 60.7 15.0 197 184-392 394-622 (767)
270 cd00561 CobA_CobO_BtuR ATP:cor 96.4 0.0067 1.4E-07 57.2 6.0 117 210-329 3-139 (159)
271 PRK09361 radB DNA repair and r 96.4 0.0083 1.8E-07 61.5 7.3 48 197-244 11-58 (225)
272 TIGR01425 SRP54_euk signal rec 96.4 0.092 2E-06 58.1 15.6 29 208-236 99-127 (429)
273 COG0470 HolB ATPase involved i 96.4 0.03 6.5E-07 61.2 12.1 48 187-234 2-49 (325)
274 COG2607 Predicted ATPase (AAA+ 96.4 0.054 1.2E-06 53.4 12.0 114 186-328 60-183 (287)
275 PRK04132 replication factor C 96.4 0.057 1.2E-06 64.9 15.0 151 217-388 574-728 (846)
276 PRK07667 uridine kinase; Provi 96.4 0.0061 1.3E-07 60.6 5.9 42 195-236 3-44 (193)
277 PRK10416 signal recognition pa 96.3 0.014 3.1E-07 62.5 8.8 29 208-236 113-141 (318)
278 PRK05800 cobU adenosylcobinami 96.3 0.0074 1.6E-07 58.3 5.8 79 211-299 3-85 (170)
279 KOG0744 AAA+-type ATPase [Post 96.2 0.014 3.1E-07 59.7 7.6 35 209-243 177-215 (423)
280 cd01121 Sms Sms (bacterial rad 96.2 0.017 3.7E-07 63.2 8.8 49 196-244 69-117 (372)
281 PRK04296 thymidine kinase; Pro 96.2 0.0078 1.7E-07 59.6 5.5 111 210-330 3-118 (190)
282 PF03215 Rad17: Rad17 cell cyc 96.1 0.058 1.3E-06 61.7 12.7 56 186-243 19-77 (519)
283 PRK15115 response regulator Gl 96.1 1.4 3E-05 50.6 24.3 47 186-232 134-180 (444)
284 PRK12724 flagellar biosynthesi 96.1 0.13 2.9E-06 56.3 14.7 25 209-233 223-247 (432)
285 KOG0735 AAA+-type ATPase [Post 96.1 0.021 4.6E-07 64.6 8.7 161 209-391 431-616 (952)
286 cd03221 ABCF_EF-3 ABCF_EF-3 E 96.1 0.016 3.5E-07 54.4 6.9 102 209-332 26-131 (144)
287 PRK15455 PrkA family serine pr 96.1 0.0075 1.6E-07 67.8 5.2 51 185-235 75-129 (644)
288 PRK06067 flagellar accessory p 96.1 0.019 4.1E-07 59.3 8.0 49 196-244 12-60 (234)
289 COG0488 Uup ATPase components 96.1 0.098 2.1E-06 60.0 14.2 59 283-346 450-511 (530)
290 COG0464 SpoVK ATPases of the A 96.0 0.099 2.1E-06 60.7 14.7 153 186-362 242-425 (494)
291 COG4088 Predicted nucleotide k 96.0 0.05 1.1E-06 52.2 9.6 30 210-239 2-31 (261)
292 PRK10733 hflB ATP-dependent me 96.0 0.046 1E-06 65.0 12.0 128 210-361 186-336 (644)
293 TIGR01359 UMP_CMP_kin_fam UMP- 96.0 0.032 6.9E-07 55.1 9.1 23 211-233 1-23 (183)
294 cd01393 recA_like RecA is a b 96.0 0.025 5.3E-07 58.1 8.6 48 197-244 7-60 (226)
295 cd03214 ABC_Iron-Siderophores_ 96.0 0.028 6E-07 55.3 8.5 120 209-332 25-162 (180)
296 KOG2123 Uncharacterized conser 96.0 0.0003 6.6E-09 69.9 -5.3 55 587-641 42-98 (388)
297 PRK12723 flagellar biosynthesi 96.0 0.11 2.3E-06 57.2 13.6 27 208-234 173-199 (388)
298 PRK06762 hypothetical protein; 96.0 0.032 7E-07 54.0 8.8 25 209-233 2-26 (166)
299 TIGR01420 pilT_fam pilus retra 96.0 0.02 4.3E-07 62.6 8.0 110 209-330 122-232 (343)
300 cd03223 ABCD_peroxisomal_ALDP 96.0 0.023 4.9E-07 55.0 7.6 118 209-332 27-152 (166)
301 COG4608 AppF ABC-type oligopep 95.9 0.031 6.8E-07 56.7 8.5 124 208-334 38-176 (268)
302 KOG1051 Chaperone HSP104 and r 95.9 0.056 1.2E-06 64.5 11.8 105 186-303 562-673 (898)
303 COG0542 clpA ATP-binding subun 95.9 0.016 3.5E-07 67.9 7.3 48 185-234 169-216 (786)
304 PRK14722 flhF flagellar biosyn 95.9 0.064 1.4E-06 58.4 11.4 29 208-236 136-164 (374)
305 PF01583 APS_kinase: Adenylyls 95.9 0.0094 2E-07 55.9 4.4 36 209-244 2-37 (156)
306 PF07726 AAA_3: ATPase family 95.9 0.0053 1.1E-07 54.8 2.6 31 212-242 2-32 (131)
307 cd00983 recA RecA is a bacter 95.9 0.016 3.5E-07 61.6 6.4 49 196-244 41-90 (325)
308 KOG0731 AAA+-type ATPase conta 95.8 0.13 2.8E-06 60.2 13.8 175 183-387 308-520 (774)
309 PRK05541 adenylylsulfate kinas 95.8 0.0095 2.1E-07 58.4 4.3 36 208-243 6-41 (176)
310 PRK12726 flagellar biosynthesi 95.8 0.15 3.2E-06 55.1 13.1 37 207-243 204-240 (407)
311 PF13306 LRR_5: Leucine rich r 95.8 0.033 7.2E-07 51.2 7.6 35 789-824 31-66 (129)
312 TIGR02012 tigrfam_recA protein 95.8 0.018 3.8E-07 61.3 6.3 49 196-244 41-90 (321)
313 COG1066 Sms Predicted ATP-depe 95.7 0.05 1.1E-06 58.2 9.4 97 195-300 79-178 (456)
314 PF13238 AAA_18: AAA domain; P 95.7 0.0084 1.8E-07 55.2 3.4 22 212-233 1-22 (129)
315 KOG0728 26S proteasome regulat 95.7 0.46 1E-05 47.0 15.1 146 187-360 147-331 (404)
316 KOG1970 Checkpoint RAD17-RFC c 95.7 0.19 4.1E-06 55.7 13.8 41 193-233 89-134 (634)
317 COG2884 FtsE Predicted ATPase 95.7 0.074 1.6E-06 50.6 9.3 55 281-335 146-204 (223)
318 KOG2035 Replication factor C, 95.7 0.32 6.8E-06 49.2 14.1 225 186-429 13-282 (351)
319 cd03222 ABC_RNaseL_inhibitor T 95.7 0.029 6.3E-07 54.6 7.0 105 209-333 25-137 (177)
320 PRK09354 recA recombinase A; P 95.7 0.021 4.6E-07 61.2 6.5 49 196-244 46-95 (349)
321 PRK10923 glnG nitrogen regulat 95.7 0.18 4E-06 58.2 14.9 47 186-232 138-184 (469)
322 PF00485 PRK: Phosphoribulokin 95.7 0.01 2.2E-07 59.3 3.8 26 211-236 1-26 (194)
323 cd03216 ABC_Carb_Monos_I This 95.7 0.019 4.1E-07 55.4 5.6 116 209-332 26-146 (163)
324 PRK12337 2-phosphoglycerate ki 95.7 0.0086 1.9E-07 65.9 3.5 27 207-233 253-279 (475)
325 COG0563 Adk Adenylate kinase a 95.6 0.033 7.1E-07 54.2 7.2 23 211-233 2-24 (178)
326 TIGR02329 propionate_PrpR prop 95.6 0.21 4.6E-06 57.5 14.8 48 185-232 211-258 (526)
327 PF13604 AAA_30: AAA domain; P 95.6 0.071 1.5E-06 53.1 9.6 39 195-236 7-45 (196)
328 PRK05703 flhF flagellar biosyn 95.6 0.14 3E-06 57.4 13.0 26 209-234 221-246 (424)
329 cd01129 PulE-GspE PulE/GspE Th 95.6 0.051 1.1E-06 56.8 9.0 116 195-328 69-184 (264)
330 PRK09270 nucleoside triphospha 95.6 0.018 3.9E-07 59.1 5.5 32 206-237 30-61 (229)
331 PF13671 AAA_33: AAA domain; P 95.6 0.054 1.2E-06 50.9 8.4 24 211-234 1-24 (143)
332 PRK10820 DNA-binding transcrip 95.6 0.21 4.5E-06 58.0 14.8 49 183-231 201-249 (520)
333 cd01124 KaiC KaiC is a circadi 95.6 0.056 1.2E-06 53.5 8.9 34 211-244 1-34 (187)
334 cd02027 APSK Adenosine 5'-phos 95.6 0.048 1E-06 51.6 7.8 24 211-234 1-24 (149)
335 TIGR00416 sms DNA repair prote 95.5 0.053 1.1E-06 61.3 9.0 50 195-244 80-129 (454)
336 KOG1947 Leucine rich repeat pr 95.5 0.0022 4.8E-08 74.6 -2.0 160 768-929 187-369 (482)
337 KOG1969 DNA replication checkp 95.4 0.043 9.2E-07 62.6 8.0 76 207-302 324-399 (877)
338 KOG0733 Nuclear AAA ATPase (VC 95.4 0.1 2.2E-06 58.3 10.7 127 209-361 545-693 (802)
339 KOG4308 LRR-containing protein 95.4 0.00015 3.3E-09 81.6 -11.3 163 740-902 110-302 (478)
340 PTZ00301 uridine kinase; Provi 95.4 0.014 3E-07 58.4 3.8 29 209-237 3-31 (210)
341 PRK04040 adenylate kinase; Pro 95.4 0.016 3.5E-07 57.1 4.1 29 210-238 3-31 (188)
342 cd02019 NK Nucleoside/nucleoti 95.4 0.013 2.9E-07 46.9 2.9 23 211-233 1-23 (69)
343 PRK11823 DNA repair protein Ra 95.4 0.057 1.2E-06 61.0 9.0 50 195-244 66-115 (446)
344 COG0572 Udk Uridine kinase [Nu 95.3 0.018 3.9E-07 56.8 4.2 30 207-236 6-35 (218)
345 PF08433 KTI12: Chromatin asso 95.3 0.036 7.7E-07 57.9 6.6 26 210-235 2-27 (270)
346 PF00910 RNA_helicase: RNA hel 95.3 0.011 2.4E-07 52.3 2.4 26 212-237 1-26 (107)
347 KOG0739 AAA+-type ATPase [Post 95.3 0.3 6.4E-06 49.8 12.4 51 186-236 133-193 (439)
348 PRK11388 DNA-binding transcrip 95.3 0.24 5.3E-06 59.4 14.5 48 185-232 324-371 (638)
349 cd03247 ABCC_cytochrome_bd The 95.3 0.077 1.7E-06 52.0 8.5 25 209-233 28-52 (178)
350 PRK13531 regulatory ATPase Rav 95.3 0.032 7E-07 62.1 6.3 46 185-234 19-64 (498)
351 KOG0729 26S proteasome regulat 95.3 0.12 2.6E-06 51.4 9.5 49 188-236 179-238 (435)
352 PTZ00088 adenylate kinase 1; P 95.3 0.031 6.6E-07 56.9 5.7 23 211-233 8-30 (229)
353 PRK12727 flagellar biosynthesi 95.2 0.1 2.2E-06 58.7 10.2 29 208-236 349-377 (559)
354 cd03228 ABCC_MRP_Like The MRP 95.2 0.055 1.2E-06 52.7 7.3 120 209-333 28-160 (171)
355 COG2204 AtoC Response regulato 95.2 2.5 5.4E-05 47.3 20.7 48 184-231 139-186 (464)
356 PRK15424 propionate catabolism 95.2 0.31 6.8E-06 56.1 14.4 48 185-232 218-265 (538)
357 PRK08233 hypothetical protein; 95.2 0.015 3.3E-07 57.3 3.4 26 209-234 3-28 (182)
358 cd03238 ABC_UvrA The excision 95.2 0.11 2.3E-06 50.6 9.1 22 209-230 21-42 (176)
359 TIGR00150 HI0065_YjeE ATPase, 95.2 0.028 6.1E-07 51.2 4.7 40 194-233 7-46 (133)
360 PRK05480 uridine/cytidine kina 95.2 0.019 4.1E-07 58.1 4.0 27 207-233 4-30 (209)
361 PRK03839 putative kinase; Prov 95.1 0.016 3.5E-07 57.0 3.3 24 211-234 2-25 (180)
362 PF03308 ArgK: ArgK protein; 95.1 0.036 7.8E-07 56.0 5.6 43 194-236 14-56 (266)
363 cd01394 radB RadB. The archaea 95.1 0.035 7.6E-07 56.6 5.8 49 196-244 6-54 (218)
364 TIGR02237 recomb_radB DNA repa 95.1 0.026 5.7E-07 57.1 4.8 44 201-244 4-47 (209)
365 PF10137 TIR-like: Predicted n 95.1 0.06 1.3E-06 48.4 6.4 61 13-76 2-62 (125)
366 PF06068 TIP49: TIP49 C-termin 95.1 0.036 7.8E-07 58.8 5.7 60 183-242 21-83 (398)
367 PRK00625 shikimate kinase; Pro 95.1 0.017 3.7E-07 55.9 3.2 24 211-234 2-25 (173)
368 TIGR03574 selen_PSTK L-seryl-t 95.0 0.053 1.1E-06 56.5 6.9 26 211-236 1-26 (249)
369 PF00437 T2SE: Type II/IV secr 95.0 0.028 6.2E-07 59.4 5.0 126 186-328 104-232 (270)
370 KOG0734 AAA+-type ATPase conta 95.0 0.1 2.2E-06 57.3 8.9 48 185-232 303-360 (752)
371 cd03115 SRP The signal recogni 95.0 0.16 3.4E-06 49.5 9.8 26 211-236 2-27 (173)
372 TIGR02858 spore_III_AA stage I 95.0 0.088 1.9E-06 54.9 8.2 118 208-332 110-233 (270)
373 KOG0651 26S proteasome regulat 95.0 0.11 2.3E-06 53.3 8.3 31 208-238 165-195 (388)
374 cd00267 ABC_ATPase ABC (ATP-bi 95.0 0.041 8.8E-07 52.7 5.4 115 210-333 26-145 (157)
375 TIGR02915 PEP_resp_reg putativ 95.0 0.31 6.7E-06 55.9 13.6 47 186-232 139-185 (445)
376 cd01122 GP4d_helicase GP4d_hel 94.9 0.15 3.3E-06 54.0 10.3 37 208-244 29-66 (271)
377 cd03230 ABC_DR_subfamily_A Thi 94.9 0.073 1.6E-06 51.9 7.2 119 209-333 26-160 (173)
378 PF00406 ADK: Adenylate kinase 94.9 0.025 5.5E-07 53.7 3.9 91 214-310 1-94 (151)
379 COG1224 TIP49 DNA helicase TIP 94.9 0.049 1.1E-06 56.8 6.0 59 182-240 35-96 (450)
380 KOG0736 Peroxisome assembly fa 94.9 0.51 1.1E-05 54.6 14.3 58 180-237 665-733 (953)
381 TIGR00235 udk uridine kinase. 94.9 0.027 5.8E-07 56.8 4.1 28 207-234 4-31 (207)
382 PRK08356 hypothetical protein; 94.9 0.13 2.9E-06 51.2 8.9 22 209-230 5-26 (195)
383 cd03246 ABCC_Protease_Secretio 94.8 0.063 1.4E-06 52.4 6.5 119 209-332 28-160 (173)
384 KOG0743 AAA+-type ATPase [Post 94.8 0.25 5.5E-06 53.8 11.3 149 209-396 235-414 (457)
385 cd01130 VirB11-like_ATPase Typ 94.8 0.027 5.8E-07 55.7 3.9 92 209-309 25-119 (186)
386 PRK00131 aroK shikimate kinase 94.8 0.024 5.2E-07 55.5 3.5 26 209-234 4-29 (175)
387 PRK00889 adenylylsulfate kinas 94.8 0.035 7.7E-07 54.3 4.6 28 208-235 3-30 (175)
388 PF13306 LRR_5: Leucine rich r 94.8 0.1 2.2E-06 47.9 7.5 19 544-562 3-21 (129)
389 TIGR00708 cobA cob(I)alamin ad 94.8 0.12 2.6E-06 49.4 7.8 114 210-328 6-140 (173)
390 PF10236 DAP3: Mitochondrial r 94.8 0.38 8.2E-06 51.6 12.7 48 341-388 258-306 (309)
391 PRK00279 adk adenylate kinase; 94.7 0.1 2.2E-06 52.9 8.0 23 211-233 2-24 (215)
392 KOG0652 26S proteasome regulat 94.7 0.53 1.1E-05 46.9 12.2 52 186-237 171-233 (424)
393 PRK06547 hypothetical protein; 94.7 0.031 6.7E-07 54.1 3.9 27 207-233 13-39 (172)
394 COG0468 RecA RecA/RadA recombi 94.7 0.093 2E-06 54.5 7.4 47 198-244 49-95 (279)
395 KOG0727 26S proteasome regulat 94.7 0.052 1.1E-06 53.5 5.2 52 187-238 156-218 (408)
396 PRK06731 flhF flagellar biosyn 94.6 0.92 2E-05 47.3 14.7 28 208-235 74-101 (270)
397 TIGR00390 hslU ATP-dependent p 94.6 0.043 9.4E-07 59.8 4.9 52 186-237 12-75 (441)
398 TIGR01360 aden_kin_iso1 adenyl 94.6 0.031 6.8E-07 55.4 3.7 26 208-233 2-27 (188)
399 cd03232 ABC_PDR_domain2 The pl 94.6 0.15 3.2E-06 50.7 8.5 23 209-231 33-55 (192)
400 TIGR03499 FlhF flagellar biosy 94.6 0.086 1.9E-06 55.8 7.1 28 208-235 193-220 (282)
401 COG1102 Cmk Cytidylate kinase 94.6 0.029 6.2E-07 51.8 2.9 24 211-234 2-25 (179)
402 PRK14528 adenylate kinase; Pro 94.5 0.11 2.4E-06 51.2 7.5 24 210-233 2-25 (186)
403 PRK06995 flhF flagellar biosyn 94.5 0.35 7.6E-06 54.6 12.0 26 209-234 256-281 (484)
404 PRK13947 shikimate kinase; Pro 94.5 0.028 6.1E-07 54.8 3.1 25 211-235 3-27 (171)
405 TIGR01818 ntrC nitrogen regula 94.5 0.21 4.5E-06 57.7 10.7 47 186-232 134-180 (463)
406 PF00560 LRR_1: Leucine Rich R 94.5 0.015 3.4E-07 34.4 0.7 18 869-886 2-19 (22)
407 COG1120 FepC ABC-type cobalami 94.5 0.1 2.2E-06 53.3 7.1 54 281-335 147-206 (258)
408 TIGR03600 phage_DnaB phage rep 94.4 0.63 1.4E-05 52.7 14.3 72 188-267 174-246 (421)
409 TIGR02788 VirB11 P-type DNA tr 94.4 0.076 1.6E-06 57.1 6.4 112 208-330 143-255 (308)
410 cd00227 CPT Chloramphenicol (C 94.4 0.033 7.2E-07 54.4 3.4 25 210-234 3-27 (175)
411 PRK05986 cob(I)alamin adenolsy 94.4 0.095 2E-06 50.9 6.3 118 208-328 21-158 (191)
412 PRK03846 adenylylsulfate kinas 94.4 0.05 1.1E-06 54.4 4.7 37 207-243 22-58 (198)
413 PRK14529 adenylate kinase; Pro 94.4 0.2 4.2E-06 50.6 8.8 91 212-309 3-96 (223)
414 cd02028 UMPK_like Uridine mono 94.4 0.038 8.2E-07 54.1 3.7 25 211-235 1-25 (179)
415 PF03969 AFG1_ATPase: AFG1-lik 94.4 0.11 2.5E-06 56.6 7.6 99 207-328 60-167 (362)
416 cd01858 NGP_1 NGP-1. Autoanti 94.3 0.36 7.7E-06 46.2 10.3 42 190-231 82-124 (157)
417 TIGR03878 thermo_KaiC_2 KaiC d 94.3 0.053 1.2E-06 56.6 4.9 38 207-244 34-71 (259)
418 PRK05439 pantothenate kinase; 94.3 0.06 1.3E-06 57.0 5.2 30 206-235 83-112 (311)
419 TIGR02236 recomb_radA DNA repa 94.3 0.11 2.4E-06 56.1 7.5 48 197-244 83-136 (310)
420 PRK05201 hslU ATP-dependent pr 94.3 0.059 1.3E-06 58.8 5.2 53 185-237 14-78 (443)
421 COG1136 SalX ABC-type antimicr 94.3 0.13 2.8E-06 51.5 7.1 60 281-345 151-216 (226)
422 PF08423 Rad51: Rad51; InterP 94.3 0.062 1.4E-06 55.9 5.2 37 196-232 25-61 (256)
423 TIGR02655 circ_KaiC circadian 94.2 0.065 1.4E-06 61.6 5.8 50 195-244 249-298 (484)
424 cd03240 ABC_Rad50 The catalyti 94.2 0.2 4.3E-06 50.3 8.5 20 211-230 24-43 (204)
425 COG0529 CysC Adenylylsulfate k 94.2 0.065 1.4E-06 50.3 4.5 37 207-243 21-57 (197)
426 COG1703 ArgK Putative periplas 94.2 0.065 1.4E-06 54.9 4.9 43 196-238 38-80 (323)
427 cd03281 ABC_MSH5_euk MutS5 hom 94.2 0.066 1.4E-06 54.1 5.0 23 209-231 29-51 (213)
428 COG0467 RAD55 RecA-superfamily 94.2 0.065 1.4E-06 56.3 5.2 45 200-244 14-58 (260)
429 cd02024 NRK1 Nicotinamide ribo 94.2 0.032 7E-07 54.5 2.6 23 211-233 1-23 (187)
430 COG3854 SpoIIIAA ncharacterize 94.1 0.14 3.1E-06 50.1 6.8 111 210-328 138-253 (308)
431 PRK10751 molybdopterin-guanine 94.1 0.058 1.3E-06 51.8 4.2 28 208-235 5-32 (173)
432 PF03266 NTPase_1: NTPase; In 94.1 0.041 8.9E-07 53.0 3.2 24 212-235 2-25 (168)
433 PTZ00494 tuzin-like protein; P 94.1 0.33 7.1E-06 52.6 10.0 212 136-360 301-544 (664)
434 COG1428 Deoxynucleoside kinase 94.1 0.046 9.9E-07 53.2 3.4 26 209-234 4-29 (216)
435 PF03205 MobB: Molybdopterin g 94.1 0.06 1.3E-06 50.1 4.1 34 210-243 1-35 (140)
436 PRK07132 DNA polymerase III su 94.1 7.8 0.00017 41.2 20.4 167 196-391 6-185 (299)
437 cd01123 Rad51_DMC1_radA Rad51_ 94.0 0.11 2.3E-06 53.7 6.5 48 197-244 7-60 (235)
438 PF06309 Torsin: Torsin; Inte 94.0 0.11 2.3E-06 46.5 5.2 46 187-232 26-76 (127)
439 PRK14526 adenylate kinase; Pro 94.0 0.12 2.5E-06 52.0 6.3 22 212-233 3-24 (211)
440 cd02020 CMPK Cytidine monophos 94.0 0.04 8.6E-07 52.1 2.9 23 211-233 1-23 (147)
441 cd02025 PanK Pantothenate kina 94.0 0.038 8.3E-07 56.0 2.8 24 211-234 1-24 (220)
442 TIGR01351 adk adenylate kinase 94.0 0.11 2.5E-06 52.4 6.3 22 212-233 2-23 (210)
443 TIGR00455 apsK adenylylsulfate 93.9 0.19 4.1E-06 49.6 7.7 27 208-234 17-43 (184)
444 cd00071 GMPK Guanosine monopho 93.9 0.037 8E-07 51.5 2.5 27 211-237 1-27 (137)
445 PRK13949 shikimate kinase; Pro 93.9 0.043 9.3E-07 53.1 3.0 24 211-234 3-26 (169)
446 TIGR02782 TrbB_P P-type conjug 93.9 0.17 3.7E-06 53.9 7.8 89 210-309 133-223 (299)
447 cd01428 ADK Adenylate kinase ( 93.9 0.28 6.1E-06 48.8 9.1 22 212-233 2-23 (194)
448 TIGR03877 thermo_KaiC_1 KaiC d 93.9 0.088 1.9E-06 54.3 5.5 49 196-244 8-56 (237)
449 PLN03187 meiotic recombination 93.9 0.1 2.2E-06 56.3 6.1 49 196-244 113-167 (344)
450 COG1121 ZnuC ABC-type Mn/Zn tr 93.9 0.11 2.3E-06 52.9 5.8 51 281-333 148-204 (254)
451 PRK06217 hypothetical protein; 93.9 0.041 8.9E-07 54.2 2.9 23 211-233 3-25 (183)
452 cd03215 ABC_Carb_Monos_II This 93.9 0.25 5.4E-06 48.6 8.5 24 209-232 26-49 (182)
453 COG1936 Predicted nucleotide k 93.9 0.043 9.4E-07 51.4 2.8 20 211-230 2-21 (180)
454 TIGR01069 mutS2 MutS2 family p 93.9 0.12 2.7E-06 62.3 7.4 113 289-411 401-521 (771)
455 PRK10463 hydrogenase nickel in 93.9 0.11 2.3E-06 54.3 5.9 46 196-243 93-138 (290)
456 COG1875 NYN ribonuclease and A 93.9 0.57 1.2E-05 49.5 11.0 25 206-230 242-266 (436)
457 CHL00206 ycf2 Ycf2; Provisiona 93.9 0.31 6.6E-06 62.5 10.7 27 207-233 1628-1654(2281)
458 PRK13948 shikimate kinase; Pro 93.9 0.052 1.1E-06 53.0 3.4 27 208-234 9-35 (182)
459 TIGR01650 PD_CobS cobaltochela 93.8 0.11 2.4E-06 55.1 6.0 53 182-238 41-93 (327)
460 cd02023 UMPK Uridine monophosp 93.8 0.04 8.6E-07 55.2 2.6 23 211-233 1-23 (198)
461 PF00625 Guanylate_kin: Guanyl 93.8 0.055 1.2E-06 53.4 3.6 34 209-242 2-35 (183)
462 cd01125 repA Hexameric Replica 93.8 0.48 1E-05 49.0 10.7 24 211-234 3-26 (239)
463 cd03233 ABC_PDR_domain1 The pl 93.7 0.2 4.3E-06 50.3 7.5 27 208-234 32-58 (202)
464 cd02021 GntK Gluconate kinase 93.7 0.044 9.6E-07 52.0 2.7 22 211-232 1-22 (150)
465 KOG3347 Predicted nucleotide k 93.7 0.051 1.1E-06 49.2 2.8 23 210-232 8-30 (176)
466 COG5635 Predicted NTPase (NACH 93.7 0.34 7.3E-06 59.8 10.9 196 210-412 223-449 (824)
467 cd00464 SK Shikimate kinase (S 93.7 0.052 1.1E-06 51.8 3.2 22 212-233 2-23 (154)
468 COG3640 CooC CO dehydrogenase 93.7 0.15 3.2E-06 50.4 6.1 26 211-236 2-27 (255)
469 COG2019 AdkA Archaeal adenylat 93.7 0.065 1.4E-06 49.7 3.4 25 209-233 4-28 (189)
470 TIGR02322 phosphon_PhnN phosph 93.7 0.051 1.1E-06 53.4 3.1 25 210-234 2-26 (179)
471 COG4618 ArpD ABC-type protease 93.7 0.12 2.5E-06 56.9 5.8 21 210-230 363-383 (580)
472 PRK12339 2-phosphoglycerate ki 93.6 0.062 1.3E-06 53.3 3.6 25 209-233 3-27 (197)
473 KOG3864 Uncharacterized conser 93.6 0.032 6.9E-07 53.6 1.5 78 868-945 102-189 (221)
474 PRK01184 hypothetical protein; 93.6 0.1 2.2E-06 51.5 5.2 21 210-231 2-22 (184)
475 PF13504 LRR_7: Leucine rich r 93.6 0.044 9.6E-07 30.0 1.4 13 869-881 3-15 (17)
476 KOG0738 AAA+-type ATPase [Post 93.6 0.19 4.1E-06 53.2 7.0 75 159-237 189-273 (491)
477 cd03213 ABCG_EPDR ABCG transpo 93.6 0.25 5.5E-06 49.1 7.9 26 208-233 34-59 (194)
478 PLN02674 adenylate kinase 93.6 0.35 7.5E-06 49.5 8.9 25 209-233 31-55 (244)
479 PRK13946 shikimate kinase; Pro 93.5 0.055 1.2E-06 53.3 3.1 26 209-234 10-35 (184)
480 PRK14723 flhF flagellar biosyn 93.5 0.34 7.3E-06 57.5 9.8 26 209-234 185-210 (767)
481 COG0541 Ffh Signal recognition 93.5 3.9 8.5E-05 44.7 16.8 41 195-235 79-126 (451)
482 PRK12678 transcription termina 93.5 0.08 1.7E-06 59.6 4.4 92 209-303 416-516 (672)
483 PF13481 AAA_25: AAA domain; P 93.5 0.26 5.6E-06 49.1 7.8 25 210-234 33-57 (193)
484 smart00534 MUTSac ATPase domai 93.5 0.048 1E-06 53.8 2.4 21 211-231 1-21 (185)
485 PRK13975 thymidylate kinase; P 93.4 0.067 1.5E-06 53.5 3.6 26 210-235 3-28 (196)
486 PRK09435 membrane ATPase/prote 93.4 0.12 2.6E-06 55.5 5.5 40 197-236 44-83 (332)
487 PRK14738 gmk guanylate kinase; 93.4 0.071 1.5E-06 53.6 3.7 29 204-232 8-36 (206)
488 PRK15453 phosphoribulokinase; 93.4 0.097 2.1E-06 54.0 4.5 29 207-235 3-31 (290)
489 PRK09280 F0F1 ATP synthase sub 93.4 0.18 3.9E-06 56.2 7.0 91 209-302 144-250 (463)
490 PRK05057 aroK shikimate kinase 93.4 0.066 1.4E-06 52.1 3.2 26 209-234 4-29 (172)
491 TIGR03881 KaiC_arch_4 KaiC dom 93.4 0.13 2.8E-06 52.9 5.6 49 196-244 7-55 (229)
492 cd03287 ABC_MSH3_euk MutS3 hom 93.3 0.12 2.6E-06 52.2 5.2 117 208-334 30-160 (222)
493 PRK13765 ATP-dependent proteas 93.3 0.1 2.2E-06 61.1 5.3 75 182-266 27-102 (637)
494 cd03243 ABC_MutS_homologs The 93.3 0.083 1.8E-06 53.0 4.0 22 210-231 30-51 (202)
495 PRK05342 clpX ATP-dependent pr 93.3 0.1 2.3E-06 58.0 5.1 50 187-236 72-135 (412)
496 COG2274 SunT ABC-type bacterio 93.3 0.21 4.5E-06 59.5 7.8 23 209-231 499-521 (709)
497 COG0465 HflB ATP-dependent Zn 93.3 0.72 1.6E-05 53.0 11.7 52 183-234 147-208 (596)
498 COG1124 DppF ABC-type dipeptid 93.3 0.068 1.5E-06 53.2 3.1 23 209-231 33-55 (252)
499 COG0714 MoxR-like ATPases [Gen 93.3 0.11 2.5E-06 56.5 5.3 54 186-243 24-77 (329)
500 COG0194 Gmk Guanylate kinase [ 93.3 0.082 1.8E-06 50.4 3.5 25 209-233 4-28 (191)
No 1
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=100.00 E-value=1.2e-125 Score=1180.35 Aligned_cols=887 Identities=38% Similarity=0.624 Sum_probs=795.0
Q ss_pred CCCCC--CCCCcccEEEcccccccccchHHHHHHHHHhCCCeEEecCcccCCCCCchHHHHHHhhccceEEEEecCCccc
Q 002220 1 MASSS--SSCCKFDVFLSFRGEDTRDNFTSHLYAALCRKKIKTFIDDEELRRGDDISPALLNAIQGSKISVIIFSKDYAS 78 (951)
Q Consensus 1 m~~s~--~~~~~~dvfis~~~~d~~~~~~~~l~~~L~~~g~~~~~d~~~~~~g~~~~~~~~~~i~~s~~~i~v~s~~~~~ 78 (951)
||+|| ++.++||||+||||+|+|++|++||+++|.++||++|+|+ ++++|+.|.+++.+||++|+++|||+|++||+
T Consensus 1 ~~~~~~~~~~~~~~vf~sfrg~d~r~~f~~hl~~~l~~~~i~~f~d~-~~~~g~~~~~~l~~~i~~s~~~ivv~s~~ya~ 79 (1153)
T PLN03210 1 MASSSSSSRNWVYDVFPSFSGEDVRITFLSHFLKELDRKLIIAFKDN-EIERSQSLDPELKQAIRDSRIAVVVFSKNYAS 79 (1153)
T ss_pred CCCCCCCCCCCCCcEEeeCCCcccccCHHHHHHHHHHHCCCeEEccC-CccCCCcccHHHHHHHHhCeEEEEEecCCccc
Confidence 66654 5789999999999999999999999999999999999988 69999999999999999999999999999999
Q ss_pred chhhHHHHHHHHHhhhcCCCeEEEEEeecCCcccccccccHHHHHHHHHHHhCCChHHHHHHHHHHHhhccCCCCccccc
Q 002220 79 SKWCLDELVKILDCKNLNGQMVVPVFYQVDPSDVRKQTGCFRDAFVKHQKQFKDMPEKAQNWKAALTQASNLSGWASKEI 158 (951)
Q Consensus 79 s~wc~~el~~~~~~~~~~~~~~~pv~~~~~p~~vr~~~~~~~~~~~~~~~~~~~~~~~~~~w~~al~~~~~~~~~~~~~~ 158 (951)
|+||++||++|++|+++.+++|+||||+|+|++||+|+|.|+++|++++++ ...+++++|++||+++|+++||++..+
T Consensus 80 s~wcl~el~~i~~~~~~~~~~v~pvfy~v~p~~v~~~~g~f~~~f~~~~~~--~~~~~~~~w~~al~~~~~~~g~~~~~~ 157 (1153)
T PLN03210 80 SSWCLNELLEIVRCKEELGQLVIPVFYGLDPSHVRKQTGDFGEAFEKTCQN--KTEDEKIQWKQALTDVANILGYHSQNW 157 (1153)
T ss_pred chHHHHHHHHHHHhhhhcCceEEEEEecccHHHHhhccchHHHHHHHHhcc--cchhHHHHHHHHHHHHhCcCceecCCC
Confidence 999999999999999999999999999999999999999999999998865 456889999999999999999999999
Q ss_pred hhHHHHHHHHHHHHHhhccccccCCCCCCcccchhhHHHHHHhhccCCCCcEEEEEEecCCChhHHHHHHHHHHhhcccc
Q 002220 159 RSEAQLVDVIVKDILKKLENVTASTYSDGFVGLNSRIQKIKSLLCIGLPDFRTIGIWGMGGIGKTTLAGAVFKLISREFE 238 (951)
Q Consensus 159 ~~~~~~i~~i~~~i~~~~~~~~~~~~~~~~vGr~~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~~~~~~~~~f~ 238 (951)
.+|+++|++||++|++++ ..+++...+++|||+++++++.++|..+.+++++|+||||||+||||||+++|+++..+|+
T Consensus 158 ~~E~~~i~~Iv~~v~~~l-~~~~~~~~~~~vG~~~~l~~l~~lL~l~~~~~~vvgI~G~gGiGKTTLA~~l~~~l~~~F~ 236 (1153)
T PLN03210 158 PNEAKMIEEIANDVLGKL-NLTPSNDFEDFVGIEDHIAKMSSLLHLESEEVRMVGIWGSSGIGKTTIARALFSRLSRQFQ 236 (1153)
T ss_pred CCHHHHHHHHHHHHHHhh-ccccCcccccccchHHHHHHHHHHHccccCceEEEEEEcCCCCchHHHHHHHHHHHhhcCC
Confidence 999999999999999999 6777778899999999999999999877788999999999999999999999999999999
Q ss_pred ceeecccc--cch---hc----C-CCChHHHHHHHHHHHhcCccccCCCCChHHHHHHhcCCcEEEEEeCCCChHHHHHH
Q 002220 239 GKCFMPNV--REE---SE----N-GGGLVYLRDRVVSEIFQEDIKIGTPYLPDYIVERLNRMKVLTVLDDVNKVRQLHYL 308 (951)
Q Consensus 239 ~~~~~~~~--~~~---~~----~-~~~~~~l~~~il~~l~~~~~~~~~~~~~~~l~~~l~~~~~LlVlDdv~~~~~~~~l 308 (951)
+.+|+... ... .. . ......++++++.++...... .......++++++++|+||||||||+..+|+.+
T Consensus 237 g~vfv~~~~v~~~~~~~~~~~~~~~~~~~~l~~~~l~~il~~~~~--~~~~~~~~~~~L~~krvLLVLDdv~~~~~l~~L 314 (1153)
T PLN03210 237 SSVFIDRAFISKSMEIYSSANPDDYNMKLHLQRAFLSEILDKKDI--KIYHLGAMEERLKHRKVLIFIDDLDDQDVLDAL 314 (1153)
T ss_pred eEEEeeccccccchhhcccccccccchhHHHHHHHHHHHhCCCCc--ccCCHHHHHHHHhCCeEEEEEeCCCCHHHHHHH
Confidence 99887532 110 00 0 011234566666666543221 111226788999999999999999999999999
Q ss_pred HhccCCCCCCCEEEEEeCCchhhhhcCCCccceEEcCCCChhhhHHHHhhhhccCCCCChhHHHHHHHHHHHcCCCchHH
Q 002220 309 ACVLDQFGPGSRIIITTRDKRILDDFGVCDTDIYEVNKLRFHEALVLFSNFAFKENQCPGDLLALLERVLKYANGNPLAL 388 (951)
Q Consensus 309 ~~~~~~~~~gs~IlvTtR~~~v~~~~~~~~~~~~~l~~L~~~~a~~Lf~~~~~~~~~~~~~~~~~~~~i~~~~~g~PLal 388 (951)
.....++++||+||||||++.++..++++ .+|+++.|++++|++||+++||+...+++++.+++++|+++|+|+|||+
T Consensus 315 ~~~~~~~~~GsrIIiTTrd~~vl~~~~~~--~~~~v~~l~~~ea~~LF~~~Af~~~~~~~~~~~l~~~iv~~c~GLPLAl 392 (1153)
T PLN03210 315 AGQTQWFGSGSRIIVITKDKHFLRAHGID--HIYEVCLPSNELALEMFCRSAFKKNSPPDGFMELASEVALRAGNLPLGL 392 (1153)
T ss_pred HhhCccCCCCcEEEEEeCcHHHHHhcCCC--eEEEecCCCHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHhCCCcHHH
Confidence 98888889999999999999999887776 8999999999999999999999887777889999999999999999999
Q ss_pred HHHhhhcCCCCHHHHHHHHHHHhcCCCcchHHHHHHhhcCCch-hhHhhhhheecccCCCCHHHHHHHhcCCCC-cccch
Q 002220 389 RVLGSFFHRKSKSDWEKALENLNRISDPDIYDVLKISYNDLRP-EEKSMFLDIACFFAGEKKDFLTCILDDPNF-PHCGL 466 (951)
Q Consensus 389 ~~~~~~L~~~~~~~w~~~l~~l~~~~~~~i~~~l~~sy~~L~~-~~k~~fl~~a~f~~~~~~~~l~~~~~~~~~-~~~~l 466 (951)
+++|++|++++..+|+.++.+++...+..|..+|++||++|++ .+|.||+++||||.+.+++.+..++...++ +..++
T Consensus 393 ~vlgs~L~~k~~~~W~~~l~~L~~~~~~~I~~~L~~SYd~L~~~~~k~~Fl~ia~ff~~~~~~~v~~~l~~~~~~~~~~l 472 (1153)
T PLN03210 393 NVLGSYLRGRDKEDWMDMLPRLRNGLDGKIEKTLRVSYDGLNNKKDKAIFRHIACLFNGEKVNDIKLLLANSDLDVNIGL 472 (1153)
T ss_pred HHHHHHHcCCCHHHHHHHHHHHHhCccHHHHHHHHHhhhccCccchhhhhheehhhcCCCCHHHHHHHHHhcCCCchhCh
Confidence 9999999999999999999999988888899999999999976 589999999999999999988888887777 78899
Q ss_pred HHHHhccCceeeCCeEEccHHHHHHHHHHHhhhccCCCCCccccccchhhHHHhhcccCCCceeeeccccCcccceeech
Q 002220 467 NVLIEKSLITMSGYDIRMHDLLQEMGREIVRQECVKEPGKRSRLWYHEDVCHVLKKNKGTDAIEGIFLNLSQIGDIHLNS 546 (951)
Q Consensus 467 ~~L~~~sLi~~~~~~~~mH~lv~~~~~~~~~~e~~~~~~~~~rl~~~~~~~~~l~~~~~~~~~~~i~l~l~~~~~~~~~~ 546 (951)
+.|+++|||+..++++.|||++|+||++++++++ .+|++++++|.++++++++.++++++.+++|++|++......+..
T Consensus 473 ~~L~~ksLi~~~~~~~~MHdLl~~~~r~i~~~~~-~~~~~r~~l~~~~di~~vl~~~~g~~~v~~i~l~~~~~~~~~i~~ 551 (1153)
T PLN03210 473 KNLVDKSLIHVREDIVEMHSLLQEMGKEIVRAQS-NEPGEREFLVDAKDICDVLEDNTGTKKVLGITLDIDEIDELHIHE 551 (1153)
T ss_pred HHHHhcCCEEEcCCeEEhhhHHHHHHHHHHHhhc-CCCCcceeEeCHHHHHHHHHhCcccceeeEEEeccCccceeeecH
Confidence 9999999999988999999999999999999997 789999999999999999999999999999999999998999999
Q ss_pred hhhccCCCccEEEEcCCCCCCCCccCcceecCcccccCCCcceEEEeecCCCCCCCCccccccceecccCCccccccccc
Q 002220 547 RAFANMSNLRLLKFYMPEHRGLPIMSSNVRLDEDLECLPEELRYLYWHEYPLKTLPLDFDLENLIALHLPYSEVEQIWKG 626 (951)
Q Consensus 547 ~~f~~l~~Lr~L~l~~~~~~~l~~~~~~~~~~~~~~~l~~~L~~L~l~~~~l~~lp~~~~l~~L~~L~L~~~~i~~l~~~ 626 (951)
.+|.+|++|+.|.++.+.... .......++.++..+|.+|+.|+|.+|+++.+|..+.+.+|+.|++++|.++.+|.+
T Consensus 552 ~aF~~m~~L~~L~~~~~~~~~--~~~~~~~lp~~~~~lp~~Lr~L~~~~~~l~~lP~~f~~~~L~~L~L~~s~l~~L~~~ 629 (1153)
T PLN03210 552 NAFKGMRNLLFLKFYTKKWDQ--KKEVRWHLPEGFDYLPPKLRLLRWDKYPLRCMPSNFRPENLVKLQMQGSKLEKLWDG 629 (1153)
T ss_pred HHHhcCccccEEEEecccccc--cccceeecCcchhhcCcccEEEEecCCCCCCCCCcCCccCCcEEECcCccccccccc
Confidence 999999999999998764321 111345678889999999999999999999999999999999999999999999999
Q ss_pred cccccccceeccCCCCCCCcCCCCCCCCCCcEEecCCCCCCCccCcccccCCcccEEeccCCCCCcccCCCCCCCCCcee
Q 002220 627 QKEAFKLKFIDLHDSHNLTSIPEPLEAPNLERINLCNCTNLSYIPLYVQNFHNLGSLSLKGCKSLRCFPRNIHFRSPIEI 706 (951)
Q Consensus 627 ~~~l~~L~~L~L~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~L~~~~~l~~l~~~~~l~~L~~L 706 (951)
+..+++|++|+|++|..++.+|++..+++|++|+|++|..+..+|..++++++|+.|++++|..++.+|..+++++|+.|
T Consensus 630 ~~~l~~Lk~L~Ls~~~~l~~ip~ls~l~~Le~L~L~~c~~L~~lp~si~~L~~L~~L~L~~c~~L~~Lp~~i~l~sL~~L 709 (1153)
T PLN03210 630 VHSLTGLRNIDLRGSKNLKEIPDLSMATNLETLKLSDCSSLVELPSSIQYLNKLEDLDMSRCENLEILPTGINLKSLYRL 709 (1153)
T ss_pred cccCCCCCEEECCCCCCcCcCCccccCCcccEEEecCCCCccccchhhhccCCCCEEeCCCCCCcCccCCcCCCCCCCEE
Confidence 99999999999999988999999999999999999999999999999999999999999999999999999899999999
Q ss_pred eCcCCCCCCCCCccccceeeccccCCCCCccCcccccCCCCcEEeccccccccc-------ccccccCCCCCCEEeccCC
Q 002220 707 DCAWCVNLTEFPQISGKVVKLRLWYTPIEEVPSSIECLTNLETLDLRLCERLKR-------VSTSICKLKSLGSLLLAFC 779 (951)
Q Consensus 707 ~l~~~~~l~~l~~~~~~L~~L~l~~~~l~~lp~~l~~l~~L~~L~Ls~~~~~~~-------~~~~~~~l~~L~~L~l~~~ 779 (951)
++++|..+..+|....+|+.|++++|.+..+|..+ .+++|+.|++.++..... .+......++|+.|++++|
T Consensus 710 ~Lsgc~~L~~~p~~~~nL~~L~L~~n~i~~lP~~~-~l~~L~~L~l~~~~~~~l~~~~~~l~~~~~~~~~sL~~L~Ls~n 788 (1153)
T PLN03210 710 NLSGCSRLKSFPDISTNISWLDLDETAIEEFPSNL-RLENLDELILCEMKSEKLWERVQPLTPLMTMLSPSLTRLFLSDI 788 (1153)
T ss_pred eCCCCCCccccccccCCcCeeecCCCccccccccc-cccccccccccccchhhccccccccchhhhhccccchheeCCCC
Confidence 99999999999999999999999999999999876 688999999987543211 1122334578999999999
Q ss_pred CCCCccchhcccCCCCcEEEcccC-CCcccCccccCCCCCcEEeeccCCCCccCCcccCCcCCCCCCCCEEeccCCCCCC
Q 002220 780 SNLEGFPEILEKMELLETLDLERT-GVKELPPSFENLQGLRQLSLIGCSELKCSGWVLPTRISKLSSLERLQLSGCEIKE 858 (951)
Q Consensus 780 ~~~~~~~~~l~~l~~L~~L~l~~n-~i~~l~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~l~~ 858 (951)
.....+|..++++++|+.|++++| .+..+|..+ ++++|+.|++++|..... +|. ...+|+.|+|++|.+..
T Consensus 789 ~~l~~lP~si~~L~~L~~L~Ls~C~~L~~LP~~~-~L~sL~~L~Ls~c~~L~~----~p~---~~~nL~~L~Ls~n~i~~ 860 (1153)
T PLN03210 789 PSLVELPSSIQNLHKLEHLEIENCINLETLPTGI-NLESLESLDLSGCSRLRT----FPD---ISTNISDLNLSRTGIEE 860 (1153)
T ss_pred CCccccChhhhCCCCCCEEECCCCCCcCeeCCCC-CccccCEEECCCCCcccc----ccc---cccccCEeECCCCCCcc
Confidence 988899999999999999999986 567888765 789999999999987652 443 23689999999999999
Q ss_pred cCccCCCCCCCCEEEccCC-CCcccchhhcCCCCCCEEeeCCCCCCCcCC
Q 002220 859 IPEDIDCLSSLEVLDLSGS-KIEILPTSIGQLSRLRQLNLLDCNMLQSIP 907 (951)
Q Consensus 859 l~~~l~~l~~L~~L~L~~n-~l~~l~~~l~~l~~L~~L~L~~~~~l~~lp 907 (951)
+|.++..+++|+.|+|++| +++.+|..+..+++|+.|++++|+.++.++
T Consensus 861 iP~si~~l~~L~~L~L~~C~~L~~l~~~~~~L~~L~~L~l~~C~~L~~~~ 910 (1153)
T PLN03210 861 VPWWIEKFSNLSFLDMNGCNNLQRVSLNISKLKHLETVDFSDCGALTEAS 910 (1153)
T ss_pred ChHHHhcCCCCCEEECCCCCCcCccCcccccccCCCeeecCCCccccccc
Confidence 9999999999999999996 788899888899999999999999887554
No 2
>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]
Probab=100.00 E-value=3.7e-60 Score=558.36 Aligned_cols=626 Identities=24% Similarity=0.306 Sum_probs=437.9
Q ss_pred ccchhhHHHHHHhhccCCCCcEEEEEEecCCChhHHHHHHHHHH---hhccccceeecccccchhcCCCChHHHHHHHHH
Q 002220 189 VGLNSRIQKIKSLLCIGLPDFRTIGIWGMGGIGKTTLAGAVFKL---ISREFEGKCFMPNVREESENGGGLVYLRDRVVS 265 (951)
Q Consensus 189 vGr~~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~~~~~---~~~~f~~~~~~~~~~~~~~~~~~~~~l~~~il~ 265 (951)
||.+..++++.+.|..++. .+++|+||||+||||||++++|. ++.+|+.++|+.. ++ .+....++++|+.
T Consensus 161 VG~e~~~~kl~~~L~~d~~--~iv~i~GMGGvGKTTL~~qi~N~~~~v~~~Fd~~iWV~V----Sk-~f~~~~iq~~Il~ 233 (889)
T KOG4658|consen 161 VGLETMLEKLWNRLMEDDV--GIVGIYGMGGVGKTTLARQIFNKFDEVGNHFDGVIWVVV----SK-EFTTRKIQQTILE 233 (889)
T ss_pred ccHHHHHHHHHHHhccCCC--CEEEEECCCcccHHHHHHHHhcccchhcccCceEEEEEE----cc-cccHHhHHHHHHH
Confidence 9999999999999975443 89999999999999999999983 7899999999963 33 6778899999999
Q ss_pred HHhcCccccCCC---CChHHHHHHhcCCcEEEEEeCCCChHHHHHHHhccCCCCCCCEEEEEeCCchhhhh-cCCCccce
Q 002220 266 EIFQEDIKIGTP---YLPDYIVERLNRMKVLTVLDDVNKVRQLHYLACVLDQFGPGSRIIITTRDKRILDD-FGVCDTDI 341 (951)
Q Consensus 266 ~l~~~~~~~~~~---~~~~~l~~~l~~~~~LlVlDdv~~~~~~~~l~~~~~~~~~gs~IlvTtR~~~v~~~-~~~~~~~~ 341 (951)
.+...+...... ..+..+.+.|+++|++|||||||+..+|+.+..+++....||+|++|||+..|+.. ++++ ..
T Consensus 234 ~l~~~~~~~~~~~~~~~~~~i~~~L~~krfllvLDDIW~~~dw~~I~~~~p~~~~g~KvvlTTRs~~V~~~~m~~~--~~ 311 (889)
T KOG4658|consen 234 RLGLLDEEWEDKEEDELASKLLNLLEGKRFLLVLDDIWEEVDWDKIGVPFPSRENGSKVVLTTRSEEVCGRAMGVD--YP 311 (889)
T ss_pred HhccCCcccchhhHHHHHHHHHHHhccCceEEEEecccccccHHhcCCCCCCccCCeEEEEEeccHhhhhccccCC--cc
Confidence 887654443332 22378889999999999999999999999999999988889999999999999998 7776 88
Q ss_pred EEcCCCChhhhHHHHhhhhccC-CCCChhHHHHHHHHHHHcCCCchHHHHHhhhcCCC-CHHHHHHHHHHHhcC-----C
Q 002220 342 YEVNKLRFHEALVLFSNFAFKE-NQCPGDLLALLERVLKYANGNPLALRVLGSFFHRK-SKSDWEKALENLNRI-----S 414 (951)
Q Consensus 342 ~~l~~L~~~~a~~Lf~~~~~~~-~~~~~~~~~~~~~i~~~~~g~PLal~~~~~~L~~~-~~~~w~~~l~~l~~~-----~ 414 (951)
++++.|+++|||.||++.+|.. ....+.++++|++++++|+|+|||+.++|+.|+.+ +..+|+++...+.+. +
T Consensus 312 ~~v~~L~~~eaW~LF~~~v~~~~~~~~~~i~~lak~v~~kC~GLPLAl~viG~~ma~K~t~~eW~~~~~~l~s~~~~~~~ 391 (889)
T KOG4658|consen 312 IEVECLTPEEAWDLFQKKVGPNTLGSHPDIEELAKEVAEKCGGLPLALNVLGGLLACKKTVQEWRRALNVLKSSLAADFS 391 (889)
T ss_pred ccccccCccccHHHHHHhhccccccccccHHHHHHHHHHHhCChHHHHHHHHHHhcCCCcHHHHHHHHccccccccCCCC
Confidence 9999999999999999999875 33335588999999999999999999999999986 677999999988654 1
Q ss_pred --CcchHHHHHHhhcCCchhhHhhhhheecccCCCC--HHHHHHHhcCCCC--c-----------ccchHHHHhccCcee
Q 002220 415 --DPDIYDVLKISYNDLRPEEKSMFLDIACFFAGEK--KDFLTCILDDPNF--P-----------HCGLNVLIEKSLITM 477 (951)
Q Consensus 415 --~~~i~~~l~~sy~~L~~~~k~~fl~~a~f~~~~~--~~~l~~~~~~~~~--~-----------~~~l~~L~~~sLi~~ 477 (951)
.+.+.+++++|||.||++.|.||+|||.||+++. ++.++.+|+++|| + ...+.+|++++|+..
T Consensus 392 ~~~~~i~~iLklSyd~L~~~lK~CFLycalFPED~~I~~e~Li~yWiaEGfi~~~~~~~~~~d~G~~~i~~LV~~~Ll~~ 471 (889)
T KOG4658|consen 392 GMEESILPILKLSYDNLPEELKSCFLYCALFPEDYEIKKEKLIEYWIAEGFIDPLDGGETAEDVGYDYIEELVRASLLIE 471 (889)
T ss_pred chhhhhHHhhhccHhhhhHHHHHHHHhhccCCcccccchHHHHHHHHhccCcCccccccchhcchHHHHHHHHHHHHHhh
Confidence 3568899999999999999999999999999985 5679999999997 2 123899999999988
Q ss_pred eC-----CeEEccHHHHHHHHHHHhhhccCCCCCccccccchhhHHHhhcccCCCceeeeccccCcccceeechhhhccC
Q 002220 478 SG-----YDIRMHDLLQEMGREIVRQECVKEPGKRSRLWYHEDVCHVLKKNKGTDAIEGIFLNLSQIGDIHLNSRAFANM 552 (951)
Q Consensus 478 ~~-----~~~~mH~lv~~~~~~~~~~e~~~~~~~~~rl~~~~~~~~~l~~~~~~~~~~~i~l~l~~~~~~~~~~~~f~~l 552 (951)
.. ..+.|||++|+||.+++++.+....... .....+
T Consensus 472 ~~~~~~~~~~kmHDvvRe~al~ias~~~~~~e~~i------------v~~~~~--------------------------- 512 (889)
T KOG4658|consen 472 ERDEGRKETVKMHDVVREMALWIASDFGKQEENQI------------VSDGVG--------------------------- 512 (889)
T ss_pred cccccceeEEEeeHHHHHHHHHHhccccccccceE------------EECCcC---------------------------
Confidence 74 6799999999999999986532111100 000000
Q ss_pred CCccEEEEcCCCCCCCCccCcceecCcccccCCCcceEEEeecCCCCCCCCccccccceecccCCcc--ccccccc-ccc
Q 002220 553 SNLRLLKFYMPEHRGLPIMSSNVRLDEDLECLPEELRYLYWHEYPLKTLPLDFDLENLIALHLPYSE--VEQIWKG-QKE 629 (951)
Q Consensus 553 ~~Lr~L~l~~~~~~~l~~~~~~~~~~~~~~~l~~~L~~L~l~~~~l~~lp~~~~l~~L~~L~L~~~~--i~~l~~~-~~~ 629 (951)
+ ...+.. .-+...|...+.+|.+..++.....++|++|-+..|. +..++.. |..
T Consensus 513 --~-------------------~~~~~~--~~~~~~rr~s~~~~~~~~~~~~~~~~~L~tLll~~n~~~l~~is~~ff~~ 569 (889)
T KOG4658|consen 513 --L-------------------SEIPQV--KSWNSVRRMSLMNNKIEHIAGSSENPKLRTLLLQRNSDWLLEISGEFFRS 569 (889)
T ss_pred --c-------------------cccccc--cchhheeEEEEeccchhhccCCCCCCccceEEEeecchhhhhcCHHHHhh
Confidence 0 000000 0013567777777777777777666677777777765 4555443 555
Q ss_pred ccccceeccCCCCCCCcCCCCC-CCCCCcEEecCCCCCCCccCcccccCCcccEEeccCCCCCcccCCCCCCCCCceeeC
Q 002220 630 AFKLKFIDLHDSHNLTSIPEPL-EAPNLERINLCNCTNLSYIPLYVQNFHNLGSLSLKGCKSLRCFPRNIHFRSPIEIDC 708 (951)
Q Consensus 630 l~~L~~L~L~~~~~~~~~~~~~-~l~~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~L~~~~~l~~l~~~~~l~~L~~L~l 708 (951)
++.|++|||++|.....+|... .+-+|++|++++ +.+..+|..++++++|.+|++..+..+.
T Consensus 570 m~~LrVLDLs~~~~l~~LP~~I~~Li~LryL~L~~-t~I~~LP~~l~~Lk~L~~Lnl~~~~~l~---------------- 632 (889)
T KOG4658|consen 570 LPLLRVLDLSGNSSLSKLPSSIGELVHLRYLDLSD-TGISHLPSGLGNLKKLIYLNLEVTGRLE---------------- 632 (889)
T ss_pred CcceEEEECCCCCccCcCChHHhhhhhhhcccccC-CCccccchHHHHHHhhheeccccccccc----------------
Confidence 6666666666665555555333 455555555555 2344555555555555555555432111
Q ss_pred cCCCCCCCCCccccceeeccccCCCCCccCcccccCCCCcEEeccccc--ccccccccccCCCCCCEEeccCCCCCCccc
Q 002220 709 AWCVNLTEFPQISGKVVKLRLWYTPIEEVPSSIECLTNLETLDLRLCE--RLKRVSTSICKLKSLGSLLLAFCSNLEGFP 786 (951)
Q Consensus 709 ~~~~~l~~l~~~~~~L~~L~l~~~~l~~lp~~l~~l~~L~~L~Ls~~~--~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~ 786 (951)
.+|..+..+.+|++|.+.... .....-..+.++.+|+.+.....+. .+.
T Consensus 633 ---------------------------~~~~i~~~L~~Lr~L~l~~s~~~~~~~~l~el~~Le~L~~ls~~~~s~--~~~ 683 (889)
T KOG4658|consen 633 ---------------------------SIPGILLELQSLRVLRLPRSALSNDKLLLKELENLEHLENLSITISSV--LLL 683 (889)
T ss_pred ---------------------------cccchhhhcccccEEEeeccccccchhhHHhhhcccchhhheeecchh--HhH
Confidence 123334558888888886543 1122223345666666666654443 122
Q ss_pred hhcccCCCCc----EEEcccCCCcccCccccCCCCCcEEeeccCCCCccCC-cccCCcCC-CCCCCCEEeccCCCCCCcC
Q 002220 787 EILEKMELLE----TLDLERTGVKELPPSFENLQGLRQLSLIGCSELKCSG-WVLPTRIS-KLSSLERLQLSGCEIKEIP 860 (951)
Q Consensus 787 ~~l~~l~~L~----~L~l~~n~i~~l~~~~~~l~~L~~L~l~~~~~~~~~~-~~~~~~~~-~l~~L~~L~L~~~~l~~l~ 860 (951)
+.+..++.|. .+.+.++.....+..+..+.+|+.|.+.+|...+... +.-..... .++++..+.+.+|.....+
T Consensus 684 e~l~~~~~L~~~~~~l~~~~~~~~~~~~~~~~l~~L~~L~i~~~~~~e~~~~~~~~~~~~~~f~~l~~~~~~~~~~~r~l 763 (889)
T KOG4658|consen 684 EDLLGMTRLRSLLQSLSIEGCSKRTLISSLGSLGNLEELSILDCGISEIVIEWEESLIVLLCFPNLSKVSILNCHMLRDL 763 (889)
T ss_pred hhhhhhHHHHHHhHhhhhcccccceeecccccccCcceEEEEcCCCchhhcccccccchhhhHHHHHHHHhhcccccccc
Confidence 2233334333 4444445555666778899999999999998865321 00011111 2556777777777777777
Q ss_pred ccCCCCCCCCEEEccCCCCc-ccchhhcCCC----------CCCEE----eeCCCCCCCcCCCccccccEeeeccCcccc
Q 002220 861 EDIDCLSSLEVLDLSGSKIE-ILPTSIGQLS----------RLRQL----NLLDCNMLQSIPELPRGLLRLNAQNCRRLR 925 (951)
Q Consensus 861 ~~l~~l~~L~~L~L~~n~l~-~l~~~l~~l~----------~L~~L----~L~~~~~l~~lp~~~~~L~~L~i~~C~~L~ 925 (951)
.+....++|+.|.+..|... .+.+....+. ++..+ ++.+.+.+...|-..+.|+.+.+..||++.
T Consensus 764 ~~~~f~~~L~~l~l~~~~~~e~~i~~~k~~~~l~~~i~~f~~~~~l~~~~~l~~l~~i~~~~l~~~~l~~~~ve~~p~l~ 843 (889)
T KOG4658|consen 764 TWLLFAPHLTSLSLVSCRLLEDIIPKLKALLELKELILPFNKLEGLRMLCSLGGLPQLYWLPLSFLKLEELIVEECPKLG 843 (889)
T ss_pred chhhccCcccEEEEecccccccCCCHHHHhhhcccEEecccccccceeeecCCCCceeEecccCccchhheehhcCcccc
Confidence 77777889999999988544 2222222222 23333 222222222233223568889999999998
Q ss_pred cCCCcC
Q 002220 926 SLPELP 931 (951)
Q Consensus 926 ~lp~~~ 931 (951)
.+|...
T Consensus 844 ~~P~~~ 849 (889)
T KOG4658|consen 844 KLPLLS 849 (889)
T ss_pred cCcccc
Confidence 888743
No 3
>PLN03194 putative disease resistance protein; Provisional
Probab=100.00 E-value=6.1e-40 Score=303.20 Aligned_cols=158 Identities=32% Similarity=0.541 Sum_probs=145.4
Q ss_pred CCCCCCCCcccEEEcccccccccchHHHHHHHHHhCCCeEEecCcccCCCCCchHHHHHHhhccceEEEEecCCcccchh
Q 002220 2 ASSSSSCCKFDVFLSFRGEDTRDNFTSHLYAALCRKKIKTFIDDEELRRGDDISPALLNAIQGSKISVIIFSKDYASSKW 81 (951)
Q Consensus 2 ~~s~~~~~~~dvfis~~~~d~~~~~~~~l~~~L~~~g~~~~~d~~~~~~g~~~~~~~~~~i~~s~~~i~v~s~~~~~s~w 81 (951)
++|++...+|||||||+|+|++++|++||+++|+++||++|+|++++++|+.|.++|.+||++|+++|||+|++|++|+|
T Consensus 18 ~~~~~~~~~yDVFISFrG~DtR~~FvshL~~aL~~~GI~vF~D~~el~~G~~i~~~L~~AIeeSri~IvVfS~~Ya~S~W 97 (187)
T PLN03194 18 PSSSSSAKPCDVFINHRGIDTKRTIATLLYDHLSRLNLRPFLDNKNMKPGDKLFDKINSAIRNCKVGVAVFSPRYCESYF 97 (187)
T ss_pred ccCCCCCCCCcEEEeCCCccccccHHHHHHHHHHHCCCEEEEcCccccCCCcHHHHHHHHHHhCeEEEEEECCCcccchh
Confidence 46778889999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hHHHHHHHHHhhhcCCCeEEEEEeecCCcccccc-cccHHHHHHHHHHHhCCChHHHHHHHHHHHhhccCCCCcccc-ch
Q 002220 82 CLDELVKILDCKNLNGQMVVPVFYQVDPSDVRKQ-TGCFRDAFVKHQKQFKDMPEKAQNWKAALTQASNLSGWASKE-IR 159 (951)
Q Consensus 82 c~~el~~~~~~~~~~~~~~~pv~~~~~p~~vr~~-~~~~~~~~~~~~~~~~~~~~~~~~w~~al~~~~~~~~~~~~~-~~ 159 (951)
|++||++|+++. +.|+||||+|+|++||+| .|. ...+++++|++||.++++++|+++.. .+
T Consensus 98 CLdEL~~I~e~~----~~ViPIFY~VdPsdVr~q~~~~-------------~~~e~v~~Wr~AL~~va~l~G~~~~~~~~ 160 (187)
T PLN03194 98 CLHELALIMESK----KRVIPIFCDVKPSQLRVVDNGT-------------CPDEEIRRFNWALEEAKYTVGLTFDSLKG 160 (187)
T ss_pred HHHHHHHHHHcC----CEEEEEEecCCHHHhhccccCC-------------CCHHHHHHHHHHHHHHhccccccCCCCCC
Confidence 999999999863 479999999999999997 332 24589999999999999999987753 47
Q ss_pred hHHHHHHHHHHHHHhhc
Q 002220 160 SEAQLVDVIVKDILKKL 176 (951)
Q Consensus 160 ~~~~~i~~i~~~i~~~~ 176 (951)
+|+++|++|++.|.+++
T Consensus 161 ~e~e~i~~iv~~v~k~l 177 (187)
T PLN03194 161 NWSEVVTMASDAVIKNL 177 (187)
T ss_pred CHHHHHHHHHHHHHHHH
Confidence 89999999999999987
No 4
>PF00931 NB-ARC: NB-ARC domain; InterPro: IPR002182 This is the NB-ARC domain, a novel signalling motif found in bacteria and eukaryotes, shared by plant resistance gene products and regulators of cell death in animals []. This domain has been structurally characterised in the human protein apoptotic protease-activating factor 1 (Apaf-1) []. It contains the three-layered alpha-beta fold and subsequent short alpha-helical region characteristic of the AAA+ ATPase domain superfamily. While this domain is thought to bind and hyrolyse ATP, only ADP binding has been experimentally verified. It is proposed that binding and hydrolysis of ATP by this domain induces conformational changes the the overall protein, leading to formation of the apoptosome.; GO: 0043531 ADP binding; PDB: 3IZA_E 1Z6T_D 3SFZ_A 3SHF_A 1VT4_M 3IZ8_G 3LQR_A 2A5Y_C 3LQQ_A.
Probab=100.00 E-value=2.9e-37 Score=331.81 Aligned_cols=265 Identities=31% Similarity=0.480 Sum_probs=207.6
Q ss_pred chhhHHHHHHhhccCCCCcEEEEEEecCCChhHHHHHHHHHH--hhccccceeecccccchhcCCCChHHHHHHHHHHHh
Q 002220 191 LNSRIQKIKSLLCIGLPDFRTIGIWGMGGIGKTTLAGAVFKL--ISREFEGKCFMPNVREESENGGGLVYLRDRVVSEIF 268 (951)
Q Consensus 191 r~~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~~~~~--~~~~f~~~~~~~~~~~~~~~~~~~~~l~~~il~~l~ 268 (951)
||+++++|.+.|....++.++|+|+||||+||||||++++++ ++.+|+.++|+.... ......+...++.++.
T Consensus 1 re~~~~~l~~~L~~~~~~~~~v~I~G~~G~GKT~LA~~~~~~~~~~~~f~~v~wv~~~~-----~~~~~~~~~~i~~~l~ 75 (287)
T PF00931_consen 1 REKEIEKLKDWLLDNSNEVRVVAIVGMGGIGKTTLARQVARDLRIKNRFDGVIWVSLSK-----NPSLEQLLEQILRQLG 75 (287)
T ss_dssp -HHHHHHHHHHHHTTTTSSEEEEEEESTTSSHHHHHHHHHCHHHHCCCCTEEEEEEEES------SCCHHHHHHHHHHHT
T ss_pred CHHHHHHHHHHhhCCCCCeEEEEEEcCCcCCcceeeeeccccccccccccccccccccc-----cccccccccccccccc
Confidence 789999999999876688999999999999999999999987 889999999986432 3344778888888887
Q ss_pred cCcccc---CCCCCh-HHHHHHhcCCcEEEEEeCCCChHHHHHHHhccCCCCCCCEEEEEeCCchhhhhcCCCccceEEc
Q 002220 269 QEDIKI---GTPYLP-DYIVERLNRMKVLTVLDDVNKVRQLHYLACVLDQFGPGSRIIITTRDKRILDDFGVCDTDIYEV 344 (951)
Q Consensus 269 ~~~~~~---~~~~~~-~~l~~~l~~~~~LlVlDdv~~~~~~~~l~~~~~~~~~gs~IlvTtR~~~v~~~~~~~~~~~~~l 344 (951)
...... .+.... ..+.+.++++++|+||||||+...|+.+...++....|++||||||+..++..++.. ...+++
T Consensus 76 ~~~~~~~~~~~~~~~~~~l~~~L~~~~~LlVlDdv~~~~~~~~l~~~~~~~~~~~kilvTTR~~~v~~~~~~~-~~~~~l 154 (287)
T PF00931_consen 76 EPDSSISDPKDIEELQDQLRELLKDKRCLLVLDDVWDEEDLEELREPLPSFSSGSKILVTTRDRSVAGSLGGT-DKVIEL 154 (287)
T ss_dssp CC-STSSCCSSHHHHHHHHHHHHCCTSEEEEEEEE-SHHHH-------HCHHSS-EEEEEESCGGGGTTHHSC-EEEEEC
T ss_pred ccccccccccccccccccchhhhccccceeeeeeecccccccccccccccccccccccccccccccccccccc-cccccc
Confidence 764432 111122 888899999999999999999999988888877777899999999999988766531 278999
Q ss_pred CCCChhhhHHHHhhhhccCC-CCChhHHHHHHHHHHHcCCCchHHHHHhhhcCCC-CHHHHHHHHHHHhcCC------Cc
Q 002220 345 NKLRFHEALVLFSNFAFKEN-QCPGDLLALLERVLKYANGNPLALRVLGSFFHRK-SKSDWEKALENLNRIS------DP 416 (951)
Q Consensus 345 ~~L~~~~a~~Lf~~~~~~~~-~~~~~~~~~~~~i~~~~~g~PLal~~~~~~L~~~-~~~~w~~~l~~l~~~~------~~ 416 (951)
++|+.+||++||.+.++... ...+...+.+++|+++|+|+|||++++|++|+.+ +..+|..+++++.... ..
T Consensus 155 ~~L~~~ea~~L~~~~~~~~~~~~~~~~~~~~~~i~~~c~glPLal~~~a~~l~~~~~~~~w~~~~~~l~~~~~~~~~~~~ 234 (287)
T PF00931_consen 155 EPLSEEEALELFKKRAGRKESESPEDLEDLAKEIVEKCGGLPLALKLIASYLRSKSTVDEWEEALEELENSLRESRDYDR 234 (287)
T ss_dssp SS--HHHHHHHHHHHHTSHS----TTSCTHHHHHHHHTTT-HHHHHHHHHHHHHHHSSSSHHHHHHHHHHCHTCSSGSCH
T ss_pred cccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence 99999999999999997654 2334455789999999999999999999999643 6688999988765432 35
Q ss_pred chHHHHHHhhcCCchhhHhhhhheecccCCCC--HHHHHHHhcCCCC
Q 002220 417 DIYDVLKISYNDLRPEEKSMFLDIACFFAGEK--KDFLTCILDDPNF 461 (951)
Q Consensus 417 ~i~~~l~~sy~~L~~~~k~~fl~~a~f~~~~~--~~~l~~~~~~~~~ 461 (951)
.+..++..||+.||++.|+||++||+||.+.. .+.++.+|.++|+
T Consensus 235 ~~~~~l~~s~~~L~~~~~~~f~~L~~f~~~~~i~~~~li~lW~~e~~ 281 (287)
T PF00931_consen 235 SVFSALELSYDSLPDELRRCFLYLSIFPEGVPIPRERLIRLWVAEGF 281 (287)
T ss_dssp HHHHHHHHHHHSSHTCCHHHHHHGGGSGTTS-EEHHHHHHHHTT-HH
T ss_pred cccccceechhcCCccHHHHHhhCcCCCCCceECHHHHHHHHHHCCC
Confidence 69999999999999999999999999999876 7889999999887
No 5
>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional
Probab=100.00 E-value=1.5e-33 Score=354.58 Aligned_cols=432 Identities=18% Similarity=0.185 Sum_probs=290.3
Q ss_pred CCCCCccccccchhhHHHhhcccCCCceeeeccccCcccceeechhhhccCCCccEEEEcCCCCCCCCccCcceecCccc
Q 002220 502 KEPGKRSRLWYHEDVCHVLKKNKGTDAIEGIFLNLSQIGDIHLNSRAFANMSNLRLLKFYMPEHRGLPIMSSNVRLDEDL 581 (951)
Q Consensus 502 ~~~~~~~rl~~~~~~~~~l~~~~~~~~~~~i~l~l~~~~~~~~~~~~f~~l~~Lr~L~l~~~~~~~l~~~~~~~~~~~~~ 581 (951)
.++.++.+.|...+.+......+.....+...++++.+......+..|..+++|++|++++|.+. ..++.++
T Consensus 42 ~~~~~~~~~w~~~~~~c~w~gv~c~~~~~v~~L~L~~~~i~~~~~~~~~~l~~L~~L~Ls~n~~~--------~~ip~~~ 113 (968)
T PLN00113 42 NDPLKYLSNWNSSADVCLWQGITCNNSSRVVSIDLSGKNISGKISSAIFRLPYIQTINLSNNQLS--------GPIPDDI 113 (968)
T ss_pred CCCcccCCCCCCCCCCCcCcceecCCCCcEEEEEecCCCccccCChHHhCCCCCCEEECCCCccC--------CcCChHH
Confidence 34555556675443322333333222234456666666555556788999999999999998753 1344455
Q ss_pred ccCCCcceEEEeecCCCCCCCCccccccceecccCCcccc-ccccccccccccceeccCCCCCCCcCCC-CCCCCCCcEE
Q 002220 582 ECLPEELRYLYWHEYPLKTLPLDFDLENLIALHLPYSEVE-QIWKGQKEAFKLKFIDLHDSHNLTSIPE-PLEAPNLERI 659 (951)
Q Consensus 582 ~~l~~~L~~L~l~~~~l~~lp~~~~l~~L~~L~L~~~~i~-~l~~~~~~l~~L~~L~L~~~~~~~~~~~-~~~l~~L~~L 659 (951)
.....+|++|++++|.+....+...+++|++|+|++|.+. .+|..+..+++|++|++++|.+...+|. +.++++|++|
T Consensus 114 ~~~l~~L~~L~Ls~n~l~~~~p~~~l~~L~~L~Ls~n~~~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L 193 (968)
T PLN00113 114 FTTSSSLRYLNLSNNNFTGSIPRGSIPNLETLDLSNNMLSGEIPNDIGSFSSLKVLDLGGNVLVGKIPNSLTNLTSLEFL 193 (968)
T ss_pred hccCCCCCEEECcCCccccccCccccCCCCEEECcCCcccccCChHHhcCCCCCEEECccCcccccCChhhhhCcCCCee
Confidence 5445689999999988874333346788999999998887 6677788889999999998887766664 4588889999
Q ss_pred ecCCCCCCCccCcccccCCcccEEeccCCCCCcccCCCC-CCCCCceeeCcCCCCCCCCCccc---cceeeccccCCCCC
Q 002220 660 NLCNCTNLSYIPLYVQNFHNLGSLSLKGCKSLRCFPRNI-HFRSPIEIDCAWCVNLTEFPQIS---GKVVKLRLWYTPIE 735 (951)
Q Consensus 660 ~L~~~~~~~~~~~~~~~l~~L~~L~L~~~~~l~~l~~~~-~l~~L~~L~l~~~~~l~~l~~~~---~~L~~L~l~~~~l~ 735 (951)
+|++|.....+|..++++++|++|++++|.....+|..+ .+++|++|++++|.....+|..+ .+|+.|++++|.+.
T Consensus 194 ~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~ 273 (968)
T PLN00113 194 TLASNQLVGQIPRELGQMKSLKWIYLGYNNLSGEIPYEIGGLTSLNHLDLVYNNLTGPIPSSLGNLKNLQYLFLYQNKLS 273 (968)
T ss_pred eccCCCCcCcCChHHcCcCCccEEECcCCccCCcCChhHhcCCCCCEEECcCceeccccChhHhCCCCCCEEECcCCeee
Confidence 998888777888888888889999988877666777666 78888888888876655666433 46778888888775
Q ss_pred -ccCcccccCCCCcEEecccccccccccccccCCCCCCEEeccCCCCCCccchhcccCCCCcEEEcccCCCc-ccCcccc
Q 002220 736 -EVPSSIECLTNLETLDLRLCERLKRVSTSICKLKSLGSLLLAFCSNLEGFPEILEKMELLETLDLERTGVK-ELPPSFE 813 (951)
Q Consensus 736 -~lp~~l~~l~~L~~L~Ls~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~n~i~-~l~~~~~ 813 (951)
.+|.++..+++|+.|++++|.+.+.+|..+.++++|+.|++++|......|..+..+++|+.|++++|.+. .+|..++
T Consensus 274 ~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~l~ 353 (968)
T PLN00113 274 GPIPPSIFSLQKLISLDLSDNSLSGEIPELVIQLQNLEILHLFSNNFTGKIPVALTSLPRLQVLQLWSNKFSGEIPKNLG 353 (968)
T ss_pred ccCchhHhhccCcCEEECcCCeeccCCChhHcCCCCCcEEECCCCccCCcCChhHhcCCCCCEEECcCCCCcCcCChHHh
Confidence 56777888888888888888877778877888888888888888777777777888888888888888776 5676777
Q ss_pred CCCCCcEEeeccCCCCccCCcccCCcCCCCCCCCEEeccCC------------------------CCCC-cCccCCCCCC
Q 002220 814 NLQGLRQLSLIGCSELKCSGWVLPTRISKLSSLERLQLSGC------------------------EIKE-IPEDIDCLSS 868 (951)
Q Consensus 814 ~l~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~------------------------~l~~-l~~~l~~l~~ 868 (951)
.+++|+.|++++|.... ..|..+..+++|+.|++++| +++. +|..+..+++
T Consensus 354 ~~~~L~~L~Ls~n~l~~----~~p~~~~~~~~L~~L~l~~n~l~~~~p~~~~~~~~L~~L~L~~n~l~~~~p~~~~~l~~ 429 (968)
T PLN00113 354 KHNNLTVLDLSTNNLTG----EIPEGLCSSGNLFKLILFSNSLEGEIPKSLGACRSLRRVRLQDNSFSGELPSEFTKLPL 429 (968)
T ss_pred CCCCCcEEECCCCeeEe----eCChhHhCcCCCCEEECcCCEecccCCHHHhCCCCCCEEECcCCEeeeECChhHhcCCC
Confidence 77888888887776554 23444444444555555444 4442 3444444555
Q ss_pred CCEEEccCCCCc-ccchhhcCCCCCCEEeeCCCCCCCcCCCc--cccccEeeeccCcccccCCCc---Ccchhhhhcccc
Q 002220 869 LEVLDLSGSKIE-ILPTSIGQLSRLRQLNLLDCNMLQSIPEL--PRGLLRLNAQNCRRLRSLPEL---PSCLEDQDFRNM 942 (951)
Q Consensus 869 L~~L~L~~n~l~-~l~~~l~~l~~L~~L~L~~~~~l~~lp~~--~~~L~~L~i~~C~~L~~lp~~---~~~L~~l~~~~~ 942 (951)
|+.|++++|.++ .+|..+..+++|+.|++++|+....+|.. .++|+.|++++|.-...+|.. .++|+.|++++|
T Consensus 430 L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~p~~~~~~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~Ls~N 509 (968)
T PLN00113 430 VYFLDISNNNLQGRINSRKWDMPSLQMLSLARNKFFGGLPDSFGSKRLENLDLSRNQFSGAVPRKLGSLSELMQLKLSEN 509 (968)
T ss_pred CCEEECcCCcccCccChhhccCCCCcEEECcCceeeeecCcccccccceEEECcCCccCCccChhhhhhhccCEEECcCC
Confidence 555555555444 23333444555555555555554444432 245556666555443344431 124666666666
Q ss_pred ccc
Q 002220 943 HLW 945 (951)
Q Consensus 943 ~~~ 945 (951)
.+.
T Consensus 510 ~l~ 512 (968)
T PLN00113 510 KLS 512 (968)
T ss_pred cce
Confidence 543
No 6
>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional
Probab=99.98 E-value=1.3e-31 Score=337.07 Aligned_cols=355 Identities=21% Similarity=0.240 Sum_probs=213.4
Q ss_pred cceEEEeecCCCC-CCCCcc-ccccceecccCCcccc-ccccccccccccceeccCCCCCCCcCCC-CCCCCCCcEEecC
Q 002220 587 ELRYLYWHEYPLK-TLPLDF-DLENLIALHLPYSEVE-QIWKGQKEAFKLKFIDLHDSHNLTSIPE-PLEAPNLERINLC 662 (951)
Q Consensus 587 ~L~~L~l~~~~l~-~lp~~~-~l~~L~~L~L~~~~i~-~l~~~~~~l~~L~~L~L~~~~~~~~~~~-~~~l~~L~~L~L~ 662 (951)
+|+.|++++|.+. .+|..+ .+++|++|++++|.+. .+|..+.++++|++|++++|.+...+|. +..+++|++|+++
T Consensus 213 ~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls 292 (968)
T PLN00113 213 SLKWIYLGYNNLSGEIPYEIGGLTSLNHLDLVYNNLTGPIPSSLGNLKNLQYLFLYQNKLSGPIPPSIFSLQKLISLDLS 292 (968)
T ss_pred CccEEECcCCccCCcCChhHhcCCCCCEEECcCceeccccChhHhCCCCCCEEECcCCeeeccCchhHhhccCcCEEECc
Confidence 4555555555544 233333 4455555555555554 3444455555555555555554444432 2345555555555
Q ss_pred CCCCCCccCcccccCCcccEEeccCCCCCcccCCCC-CCCCCceeeCcCCCCCCCCCcc---ccceeeccccCCCCC-cc
Q 002220 663 NCTNLSYIPLYVQNFHNLGSLSLKGCKSLRCFPRNI-HFRSPIEIDCAWCVNLTEFPQI---SGKVVKLRLWYTPIE-EV 737 (951)
Q Consensus 663 ~~~~~~~~~~~~~~l~~L~~L~L~~~~~l~~l~~~~-~l~~L~~L~l~~~~~l~~l~~~---~~~L~~L~l~~~~l~-~l 737 (951)
+|.....+|..+.++++|++|++++|.....+|..+ .+++|+.|++++|.....+|.. ..+|+.|++++|.+. .+
T Consensus 293 ~n~l~~~~p~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~~~~L~~L~Ls~n~l~~~~ 372 (968)
T PLN00113 293 DNSLSGEIPELVIQLQNLEILHLFSNNFTGKIPVALTSLPRLQVLQLWSNKFSGEIPKNLGKHNNLTVLDLSTNNLTGEI 372 (968)
T ss_pred CCeeccCCChhHcCCCCCcEEECCCCccCCcCChhHhcCCCCCEEECcCCCCcCcCChHHhCCCCCcEEECCCCeeEeeC
Confidence 555444555555555555555555554444444433 4555555555555444444432 234555666665554 44
Q ss_pred CcccccCCCCcEEecccccccccccccccCCCCCCEEeccCCCCCCccchhcccCCCCcEEEcccCCCcc-cCccccCCC
Q 002220 738 PSSIECLTNLETLDLRLCERLKRVSTSICKLKSLGSLLLAFCSNLEGFPEILEKMELLETLDLERTGVKE-LPPSFENLQ 816 (951)
Q Consensus 738 p~~l~~l~~L~~L~Ls~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~n~i~~-l~~~~~~l~ 816 (951)
|.++..+++|+.|++++|.+.+.+|..+..+++|+.|++++|.....+|..+..+++|+.|++++|.+.. ++..+..++
T Consensus 373 p~~~~~~~~L~~L~l~~n~l~~~~p~~~~~~~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~ 452 (968)
T PLN00113 373 PEGLCSSGNLFKLILFSNSLEGEIPKSLGACRSLRRVRLQDNSFSGELPSEFTKLPLVYFLDISNNNLQGRINSRKWDMP 452 (968)
T ss_pred ChhHhCcCCCCEEECcCCEecccCCHHHhCCCCCCEEECcCCEeeeECChhHhcCCCCCEEECcCCcccCccChhhccCC
Confidence 5555556666666666666665666666666667777776666655666666677777777777776663 344556677
Q ss_pred CCcEEeeccCCCCccCCcccCCcCCCCCCCCEEeccCCCCCC-cCccCCCCCCCCEEEccCCCCc-ccchhhcCCCCCCE
Q 002220 817 GLRQLSLIGCSELKCSGWVLPTRISKLSSLERLQLSGCEIKE-IPEDIDCLSSLEVLDLSGSKIE-ILPTSIGQLSRLRQ 894 (951)
Q Consensus 817 ~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~l~~-l~~~l~~l~~L~~L~L~~n~l~-~l~~~l~~l~~L~~ 894 (951)
+|+.|++++|.... .+|..+ ..++|+.|++++|.+.. +|..+..+++|+.|+|++|.+. .+|..+..+++|+.
T Consensus 453 ~L~~L~L~~n~~~~----~~p~~~-~~~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~ 527 (968)
T PLN00113 453 SLQMLSLARNKFFG----GLPDSF-GSKRLENLDLSRNQFSGAVPRKLGSLSELMQLKLSENKLSGEIPDELSSCKKLVS 527 (968)
T ss_pred CCcEEECcCceeee----ecCccc-ccccceEEECcCCccCCccChhhhhhhccCEEECcCCcceeeCChHHcCccCCCE
Confidence 77777777776554 234322 34677777777777763 6666777778888888888776 66777777888888
Q ss_pred EeeCCCCCCCcCCCc---cccccEeeeccCcccccCCCc---Ccchhhhhcccccccc
Q 002220 895 LNLLDCNMLQSIPEL---PRGLLRLNAQNCRRLRSLPEL---PSCLEDQDFRNMHLWT 946 (951)
Q Consensus 895 L~L~~~~~l~~lp~~---~~~L~~L~i~~C~~L~~lp~~---~~~L~~l~~~~~~~~~ 946 (951)
|+|++|.....+|.. .++|+.|++++|.-...+|.. .++|+.|++++|++.+
T Consensus 528 L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~l~ls~N~l~~ 585 (968)
T PLN00113 528 LDLSHNQLSGQIPASFSEMPVLSQLDLSQNQLSGEIPKNLGNVESLVQVNISHNHLHG 585 (968)
T ss_pred EECCCCcccccCChhHhCcccCCEEECCCCcccccCChhHhcCcccCEEeccCCccee
Confidence 888887777766642 367788888877766666652 2357777777776543
No 7
>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]
Probab=99.95 E-value=3.4e-29 Score=263.89 Aligned_cols=339 Identities=21% Similarity=0.207 Sum_probs=205.7
Q ss_pred ccccCcccceeechhhhccCCCccEEEEcCCCCCCCCccCcceecCcccccCCCcceEEEeecCCCCCCCCcc--ccccc
Q 002220 533 FLNLSQIGDIHLNSRAFANMSNLRLLKFYMPEHRGLPIMSSNVRLDEDLECLPEELRYLYWHEYPLKTLPLDF--DLENL 610 (951)
Q Consensus 533 ~l~l~~~~~~~~~~~~f~~l~~Lr~L~l~~~~~~~l~~~~~~~~~~~~~~~l~~~L~~L~l~~~~l~~lp~~~--~l~~L 610 (951)
.+|++++..-+++...|.+++||+.+++..|.+..+|... ....+|+.|++.+|.+.++.+.. .++.|
T Consensus 82 ~LdlsnNkl~~id~~~f~nl~nLq~v~l~~N~Lt~IP~f~----------~~sghl~~L~L~~N~I~sv~se~L~~l~al 151 (873)
T KOG4194|consen 82 TLDLSNNKLSHIDFEFFYNLPNLQEVNLNKNELTRIPRFG----------HESGHLEKLDLRHNLISSVTSEELSALPAL 151 (873)
T ss_pred eeeccccccccCcHHHHhcCCcceeeeeccchhhhccccc----------ccccceeEEeeeccccccccHHHHHhHhhh
Confidence 4677777777777777778888887777777655544322 22335777777777777665443 56677
Q ss_pred eecccCCccccccccc-cccccccceeccCCCCCCCcCC-CCCCCCCCcEEecCCCCCCCccCcccccCCcccEEeccCC
Q 002220 611 IALHLPYSEVEQIWKG-QKEAFKLKFIDLHDSHNLTSIP-EPLEAPNLERINLCNCTNLSYIPLYVQNFHNLGSLSLKGC 688 (951)
Q Consensus 611 ~~L~L~~~~i~~l~~~-~~~l~~L~~L~L~~~~~~~~~~-~~~~l~~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~L~~~ 688 (951)
+.|||+.|.|.+++.. |..-.++++|+|++|.+...-. .+.++.+|..|.|++|.....-+.+|.++++|+.|+|..|
T Consensus 152 rslDLSrN~is~i~~~sfp~~~ni~~L~La~N~It~l~~~~F~~lnsL~tlkLsrNrittLp~r~Fk~L~~L~~LdLnrN 231 (873)
T KOG4194|consen 152 RSLDLSRNLISEIPKPSFPAKVNIKKLNLASNRITTLETGHFDSLNSLLTLKLSRNRITTLPQRSFKRLPKLESLDLNRN 231 (873)
T ss_pred hhhhhhhchhhcccCCCCCCCCCceEEeeccccccccccccccccchheeeecccCcccccCHHHhhhcchhhhhhcccc
Confidence 7777777777777654 5555677777777776644333 3346667777777776554444456667777777777664
Q ss_pred CCCcccC--CCCCCCCCceeeCcCCCCCCCCCccccceeeccccCCCCCccCcc-cccCCCCcEEecccccccccccccc
Q 002220 689 KSLRCFP--RNIHFRSPIEIDCAWCVNLTEFPQISGKVVKLRLWYTPIEEVPSS-IECLTNLETLDLRLCERLKRVSTSI 765 (951)
Q Consensus 689 ~~l~~l~--~~~~l~~L~~L~l~~~~~l~~l~~~~~~L~~L~l~~~~l~~lp~~-l~~l~~L~~L~Ls~~~~~~~~~~~~ 765 (951)
. +.... ..-+++ +|+.|.|..|.+..+.+. |..+.++++|+|+.|.+...-..++
T Consensus 232 ~-irive~ltFqgL~---------------------Sl~nlklqrN~I~kL~DG~Fy~l~kme~l~L~~N~l~~vn~g~l 289 (873)
T KOG4194|consen 232 R-IRIVEGLTFQGLP---------------------SLQNLKLQRNDISKLDDGAFYGLEKMEHLNLETNRLQAVNEGWL 289 (873)
T ss_pred c-eeeehhhhhcCch---------------------hhhhhhhhhcCcccccCcceeeecccceeecccchhhhhhcccc
Confidence 3 22111 111334 445555555666655443 5556666666666665555545555
Q ss_pred cCCCCCCEEeccCCCCCCccchhcccCCCCcEEEcccCCCcccCc-cccCCCCCcEEeeccCCCCccCCcccCCcCCCCC
Q 002220 766 CKLKSLGSLLLAFCSNLEGFPEILEKMELLETLDLERTGVKELPP-SFENLQGLRQLSLIGCSELKCSGWVLPTRISKLS 844 (951)
Q Consensus 766 ~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~n~i~~l~~-~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~l~ 844 (951)
.+|++|+.|++++|.+...-++....+++|++|+|++|.|+.+++ +|..+..|+.|.|+.|.+... -...|.+++
T Consensus 290 fgLt~L~~L~lS~NaI~rih~d~WsftqkL~~LdLs~N~i~~l~~~sf~~L~~Le~LnLs~Nsi~~l----~e~af~~ls 365 (873)
T KOG4194|consen 290 FGLTSLEQLDLSYNAIQRIHIDSWSFTQKLKELDLSSNRITRLDEGSFRVLSQLEELNLSHNSIDHL----AEGAFVGLS 365 (873)
T ss_pred cccchhhhhccchhhhheeecchhhhcccceeEeccccccccCChhHHHHHHHhhhhcccccchHHH----HhhHHHHhh
Confidence 666666666666666555555556666666666666666666644 455666666666666665552 233455666
Q ss_pred CCCEEeccCCCCCC----cCccCCCCCCCCEEEccCCCCcccc-hhhcCCCCCCEEeeCCCCCCCcCC
Q 002220 845 SLERLQLSGCEIKE----IPEDIDCLSSLEVLDLSGSKIEILP-TSIGQLSRLRQLNLLDCNMLQSIP 907 (951)
Q Consensus 845 ~L~~L~L~~~~l~~----l~~~l~~l~~L~~L~L~~n~l~~l~-~~l~~l~~L~~L~L~~~~~l~~lp 907 (951)
+|+.|+|++|.++- -...+..+++|+.|.+.||++..+| ..+..+++|+.|+|.+|.....-|
T Consensus 366 sL~~LdLr~N~ls~~IEDaa~~f~gl~~LrkL~l~gNqlk~I~krAfsgl~~LE~LdL~~NaiaSIq~ 433 (873)
T KOG4194|consen 366 SLHKLDLRSNELSWCIEDAAVAFNGLPSLRKLRLTGNQLKSIPKRAFSGLEALEHLDLGDNAIASIQP 433 (873)
T ss_pred hhhhhcCcCCeEEEEEecchhhhccchhhhheeecCceeeecchhhhccCcccceecCCCCcceeecc
Confidence 66666666666552 1223445666666666666666666 556666666666666655544333
No 8
>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]
Probab=99.95 E-value=7.4e-30 Score=270.10 Aligned_cols=344 Identities=23% Similarity=0.261 Sum_probs=230.7
Q ss_pred hhhhccCCCccEEEEcCCCCCCCCccCcceecCcccccCCCcceEEEeecCCCCCCCCcc-ccccceecccCCcccc--c
Q 002220 546 SRAFANMSNLRLLKFYMPEHRGLPIMSSNVRLDEDLECLPEELRYLYWHEYPLKTLPLDF-DLENLIALHLPYSEVE--Q 622 (951)
Q Consensus 546 ~~~f~~l~~Lr~L~l~~~~~~~l~~~~~~~~~~~~~~~l~~~L~~L~l~~~~l~~lp~~~-~l~~L~~L~L~~~~i~--~ 622 (951)
+.....|+.++.|.+....+. .+|+.+..+ .+|++|.+.+|.+.++-... .++.|+.+.+..|+++ .
T Consensus 25 P~~v~qMt~~~WLkLnrt~L~---------~vPeEL~~l-qkLEHLs~~HN~L~~vhGELs~Lp~LRsv~~R~N~LKnsG 94 (1255)
T KOG0444|consen 25 PHDVEQMTQMTWLKLNRTKLE---------QVPEELSRL-QKLEHLSMAHNQLISVHGELSDLPRLRSVIVRDNNLKNSG 94 (1255)
T ss_pred chhHHHhhheeEEEechhhhh---------hChHHHHHH-hhhhhhhhhhhhhHhhhhhhccchhhHHHhhhccccccCC
Confidence 344456777777777554322 222333333 25667777777766655433 6677777777777776 4
Q ss_pred cccccccccccceeccCCCCCCCcCCCCCCCCCCcEEecCCCCCCCccCc-ccccCCcccEEeccCCCCCcccCCCC-CC
Q 002220 623 IWKGQKEAFKLKFIDLHDSHNLTSIPEPLEAPNLERINLCNCTNLSYIPL-YVQNFHNLGSLSLKGCKSLRCFPRNI-HF 700 (951)
Q Consensus 623 l~~~~~~l~~L~~L~L~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~-~~~~l~~L~~L~L~~~~~l~~l~~~~-~l 700 (951)
+|..+..+..|+.||||+|++......+...+++-.|+|++|+ +..+|. .+-+++.|-+|||++ +.+..+|+.+ .+
T Consensus 95 iP~diF~l~dLt~lDLShNqL~EvP~~LE~AKn~iVLNLS~N~-IetIPn~lfinLtDLLfLDLS~-NrLe~LPPQ~RRL 172 (1255)
T KOG0444|consen 95 IPTDIFRLKDLTILDLSHNQLREVPTNLEYAKNSIVLNLSYNN-IETIPNSLFINLTDLLFLDLSN-NRLEMLPPQIRRL 172 (1255)
T ss_pred CCchhcccccceeeecchhhhhhcchhhhhhcCcEEEEcccCc-cccCCchHHHhhHhHhhhcccc-chhhhcCHHHHHH
Confidence 6677777777777777777644444455566777777777754 344444 456777777777777 4567777766 67
Q ss_pred CCCceeeCcCCCC----CCCCCccccceeeccccCCC--CCccCcccccCCCCcEEecccccccccccccccCCCCCCEE
Q 002220 701 RSPIEIDCAWCVN----LTEFPQISGKVVKLRLWYTP--IEEVPSSIECLTNLETLDLRLCERLKRVSTSICKLKSLGSL 774 (951)
Q Consensus 701 ~~L~~L~l~~~~~----l~~l~~~~~~L~~L~l~~~~--l~~lp~~l~~l~~L~~L~Ls~~~~~~~~~~~~~~l~~L~~L 774 (951)
.+|++|.+++++- +..+|. ..+|+.|++++++ +..+|.++..+.||..+|+|.| .+..+|+.+.++++|+.|
T Consensus 173 ~~LqtL~Ls~NPL~hfQLrQLPs-mtsL~vLhms~TqRTl~N~Ptsld~l~NL~dvDlS~N-~Lp~vPecly~l~~LrrL 250 (1255)
T KOG0444|consen 173 SMLQTLKLSNNPLNHFQLRQLPS-MTSLSVLHMSNTQRTLDNIPTSLDDLHNLRDVDLSEN-NLPIVPECLYKLRNLRRL 250 (1255)
T ss_pred hhhhhhhcCCChhhHHHHhcCcc-chhhhhhhcccccchhhcCCCchhhhhhhhhcccccc-CCCcchHHHhhhhhhhee
Confidence 7777777777652 233332 3456677777655 3367777777777777777755 456677777777777777
Q ss_pred eccCCCCCCccchhcccCCCCcEEEcccCCCcccCccccCCCCCcEEeeccCCCCccCCcccCCcCCCCCCCCEEeccCC
Q 002220 775 LLAFCSNLEGFPEILEKMELLETLDLERTGVKELPPSFENLQGLRQLSLIGCSELKCSGWVLPTRISKLSSLERLQLSGC 854 (951)
Q Consensus 775 ~l~~~~~~~~~~~~l~~l~~L~~L~l~~n~i~~l~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~ 854 (951)
+|++|.+. .+.-..+.-.+|++|+++.|+++.+|..+..+++|+.|.+.+|+..- . .+|+.++.+.+|+.+..++|
T Consensus 251 NLS~N~it-eL~~~~~~W~~lEtLNlSrNQLt~LP~avcKL~kL~kLy~n~NkL~F-e--GiPSGIGKL~~Levf~aanN 326 (1255)
T KOG0444|consen 251 NLSGNKIT-ELNMTEGEWENLETLNLSRNQLTVLPDAVCKLTKLTKLYANNNKLTF-E--GIPSGIGKLIQLEVFHAANN 326 (1255)
T ss_pred ccCcCcee-eeeccHHHHhhhhhhccccchhccchHHHhhhHHHHHHHhccCcccc-c--CCccchhhhhhhHHHHhhcc
Confidence 77777643 33334455567777777777777777777777777777776665443 2 26777777777777777777
Q ss_pred CCCCcCccCCCCCCCCEEEccCCCCcccchhhcCCCCCCEEeeCCCCCCCcCC
Q 002220 855 EIKEIPEDIDCLSSLEVLDLSGSKIEILPTSIGQLSRLRQLNLLDCNMLQSIP 907 (951)
Q Consensus 855 ~l~~l~~~l~~l~~L~~L~L~~n~l~~l~~~l~~l~~L~~L~L~~~~~l~~lp 907 (951)
.+.-.|+++..++.|+.|.|+.|.+-.+|+.++-++.|+.|++..|+.+..-|
T Consensus 327 ~LElVPEglcRC~kL~kL~L~~NrLiTLPeaIHlL~~l~vLDlreNpnLVMPP 379 (1255)
T KOG0444|consen 327 KLELVPEGLCRCVKLQKLKLDHNRLITLPEAIHLLPDLKVLDLRENPNLVMPP 379 (1255)
T ss_pred ccccCchhhhhhHHHHHhcccccceeechhhhhhcCCcceeeccCCcCccCCC
Confidence 77777777777777777777777777777777777777777777777776544
No 9
>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]
Probab=99.94 E-value=9.4e-30 Score=269.31 Aligned_cols=360 Identities=21% Similarity=0.314 Sum_probs=300.6
Q ss_pred CCCccEEEEcCCCCCCCCccCcceecCcccccCCCcceEEEeecCCCCCCCCcc-ccccceecccCCccccccccccccc
Q 002220 552 MSNLRLLKFYMPEHRGLPIMSSNVRLDEDLECLPEELRYLYWHEYPLKTLPLDF-DLENLIALHLPYSEVEQIWKGQKEA 630 (951)
Q Consensus 552 l~~Lr~L~l~~~~~~~l~~~~~~~~~~~~~~~l~~~L~~L~l~~~~l~~lp~~~-~l~~L~~L~L~~~~i~~l~~~~~~l 630 (951)
++-.|-.++++|.+. ...+|.+..... .+++|.+....+..+|... .+.+|+.|.+++|++.++...+..+
T Consensus 6 LpFVrGvDfsgNDFs-------g~~FP~~v~qMt-~~~WLkLnrt~L~~vPeEL~~lqkLEHLs~~HN~L~~vhGELs~L 77 (1255)
T KOG0444|consen 6 LPFVRGVDFSGNDFS-------GDRFPHDVEQMT-QMTWLKLNRTKLEQVPEELSRLQKLEHLSMAHNQLISVHGELSDL 77 (1255)
T ss_pred cceeecccccCCcCC-------CCcCchhHHHhh-heeEEEechhhhhhChHHHHHHhhhhhhhhhhhhhHhhhhhhccc
Confidence 445667788887753 234555555554 7999999999999999876 7899999999999999999999999
Q ss_pred cccceeccCCCCC--CCcCCCCCCCCCCcEEecCCCCCCCccCcccccCCcccEEeccCCCCCcccCCCC--CCCCCcee
Q 002220 631 FKLKFIDLHDSHN--LTSIPEPLEAPNLERINLCNCTNLSYIPLYVQNFHNLGSLSLKGCKSLRCFPRNI--HFRSPIEI 706 (951)
Q Consensus 631 ~~L~~L~L~~~~~--~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~L~~~~~l~~l~~~~--~l~~L~~L 706 (951)
+.|+.+.+.+|.+ ....++++.+..|+.|+|++| .+.++|..+.+-+++-.|+|++ +++.++|... ++..|-.|
T Consensus 78 p~LRsv~~R~N~LKnsGiP~diF~l~dLt~lDLShN-qL~EvP~~LE~AKn~iVLNLS~-N~IetIPn~lfinLtDLLfL 155 (1255)
T KOG0444|consen 78 PRLRSVIVRDNNLKNSGIPTDIFRLKDLTILDLSHN-QLREVPTNLEYAKNSIVLNLSY-NNIETIPNSLFINLTDLLFL 155 (1255)
T ss_pred hhhHHHhhhccccccCCCCchhcccccceeeecchh-hhhhcchhhhhhcCcEEEEccc-CccccCCchHHHhhHhHhhh
Confidence 9999999999876 345568889999999999995 5788999999999999999999 5788888766 78888888
Q ss_pred eCcCCCCCCCCCccc---cceeeccccCCCCCccC-cccccCCCCcEEeccccccc-ccccccccCCCCCCEEeccCCCC
Q 002220 707 DCAWCVNLTEFPQIS---GKVVKLRLWYTPIEEVP-SSIECLTNLETLDLRLCERL-KRVSTSICKLKSLGSLLLAFCSN 781 (951)
Q Consensus 707 ~l~~~~~l~~l~~~~---~~L~~L~l~~~~l~~lp-~~l~~l~~L~~L~Ls~~~~~-~~~~~~~~~l~~L~~L~l~~~~~ 781 (951)
++++ +.+..+|+.. .+|++|.|++|.+...- ..+..+++|+.|.+++.+.+ ..+|.++..|.+|..++++.|.
T Consensus 156 DLS~-NrLe~LPPQ~RRL~~LqtL~Ls~NPL~hfQLrQLPsmtsL~vLhms~TqRTl~N~Ptsld~l~NL~dvDlS~N~- 233 (1255)
T KOG0444|consen 156 DLSN-NRLEMLPPQIRRLSMLQTLKLSNNPLNHFQLRQLPSMTSLSVLHMSNTQRTLDNIPTSLDDLHNLRDVDLSENN- 233 (1255)
T ss_pred cccc-chhhhcCHHHHHHhhhhhhhcCCChhhHHHHhcCccchhhhhhhcccccchhhcCCCchhhhhhhhhccccccC-
Confidence 9887 5677777644 46788889998876332 22334778888888876553 4588889999999999999875
Q ss_pred CCccchhcccCCCCcEEEcccCCCcccCccccCCCCCcEEeeccCCCCccCCcccCCcCCCCCCCCEEeccCCCCC--Cc
Q 002220 782 LEGFPEILEKMELLETLDLERTGVKELPPSFENLQGLRQLSLIGCSELKCSGWVLPTRISKLSSLERLQLSGCEIK--EI 859 (951)
Q Consensus 782 ~~~~~~~l~~l~~L~~L~l~~n~i~~l~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~l~--~l 859 (951)
+..+|+.+-++++|+.|+|++|.|+++....+...+|++|+++.|.... +|..+..++.|+.|.+.+|+++ .+
T Consensus 234 Lp~vPecly~l~~LrrLNLS~N~iteL~~~~~~W~~lEtLNlSrNQLt~-----LP~avcKL~kL~kLy~n~NkL~FeGi 308 (1255)
T KOG0444|consen 234 LPIVPECLYKLRNLRRLNLSGNKITELNMTEGEWENLETLNLSRNQLTV-----LPDAVCKLTKLTKLYANNNKLTFEGI 308 (1255)
T ss_pred CCcchHHHhhhhhhheeccCcCceeeeeccHHHHhhhhhhccccchhcc-----chHHHhhhHHHHHHHhccCcccccCC
Confidence 6778999999999999999999999888777888899999999998876 8899999999999999999887 59
Q ss_pred CccCCCCCCCCEEEccCCCCcccchhhcCCCCCCEEeeCCCCCCCcCCC---ccccccEeeeccCcccccCCC
Q 002220 860 PEDIDCLSSLEVLDLSGSKIEILPTSIGQLSRLRQLNLLDCNMLQSIPE---LPRGLLRLNAQNCRRLRSLPE 929 (951)
Q Consensus 860 ~~~l~~l~~L~~L~L~~n~l~~l~~~l~~l~~L~~L~L~~~~~l~~lp~---~~~~L~~L~i~~C~~L~~lp~ 929 (951)
|++++.+.+|+.+..++|.++-+|+++..|+.|+.|.|+. +.+..+|+ +.+.|+.|++.++|.|-.-|.
T Consensus 309 PSGIGKL~~Levf~aanN~LElVPEglcRC~kL~kL~L~~-NrLiTLPeaIHlL~~l~vLDlreNpnLVMPPK 380 (1255)
T KOG0444|consen 309 PSGIGKLIQLEVFHAANNKLELVPEGLCRCVKLQKLKLDH-NRLITLPEAIHLLPDLKVLDLRENPNLVMPPK 380 (1255)
T ss_pred ccchhhhhhhHHHHhhccccccCchhhhhhHHHHHhcccc-cceeechhhhhhcCCcceeeccCCcCccCCCC
Confidence 9999999999999999999999999999999999999977 55666775 568899999999999886443
No 10
>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]
Probab=99.94 E-value=4.2e-28 Score=255.71 Aligned_cols=335 Identities=22% Similarity=0.203 Sum_probs=193.1
Q ss_pred cceEEEeecCCCCCCCCccc-cccceecccCCcccccccc-ccccccccceeccCCCCCCCcC-CCCCCCCCCcEEecCC
Q 002220 587 ELRYLYWHEYPLKTLPLDFD-LENLIALHLPYSEVEQIWK-GQKEAFKLKFIDLHDSHNLTSI-PEPLEAPNLERINLCN 663 (951)
Q Consensus 587 ~L~~L~l~~~~l~~lp~~~~-l~~L~~L~L~~~~i~~l~~-~~~~l~~L~~L~L~~~~~~~~~-~~~~~l~~L~~L~L~~ 663 (951)
+|+.+++..|.++.+|.... ..+|+.|+|.+|.|.++.. .++.++.|+.||||.|.+.... |.+..-.++++|+|++
T Consensus 103 nLq~v~l~~N~Lt~IP~f~~~sghl~~L~L~~N~I~sv~se~L~~l~alrslDLSrN~is~i~~~sfp~~~ni~~L~La~ 182 (873)
T KOG4194|consen 103 NLQEVNLNKNELTRIPRFGHESGHLEKLDLRHNLISSVTSEELSALPALRSLDLSRNLISEIPKPSFPAKVNIKKLNLAS 182 (873)
T ss_pred cceeeeeccchhhhcccccccccceeEEeeeccccccccHHHHHhHhhhhhhhhhhchhhcccCCCCCCCCCceEEeecc
Confidence 55566666666666655443 2335566666665555543 2455555666666555432211 1222345555555555
Q ss_pred CCCCCccCcccccCCcccEEeccCCCCCcccCCCC-CCCCCceeeCcCCCCCCCCCccccceeeccccCCCCCcc-Cccc
Q 002220 664 CTNLSYIPLYVQNFHNLGSLSLKGCKSLRCFPRNI-HFRSPIEIDCAWCVNLTEFPQISGKVVKLRLWYTPIEEV-PSSI 741 (951)
Q Consensus 664 ~~~~~~~~~~~~~l~~L~~L~L~~~~~l~~l~~~~-~l~~L~~L~l~~~~~l~~l~~~~~~L~~L~l~~~~l~~l-p~~l 741 (951)
|.+...-...|.++.+|..|.|++| .++.+|... + ..++|+.|+|..|.|..+ -..|
T Consensus 183 N~It~l~~~~F~~lnsL~tlkLsrN-rittLp~r~Fk--------------------~L~~L~~LdLnrN~irive~ltF 241 (873)
T KOG4194|consen 183 NRITTLETGHFDSLNSLLTLKLSRN-RITTLPQRSFK--------------------RLPKLESLDLNRNRIRIVEGLTF 241 (873)
T ss_pred ccccccccccccccchheeeecccC-cccccCHHHhh--------------------hcchhhhhhccccceeeehhhhh
Confidence 5544444445555555555555552 233333211 0 112344555555666655 2346
Q ss_pred ccCCCCcEEecccccccccccccccCCCCCCEEeccCCCCCCccchhcccCCCCcEEEcccCCCccc-CccccCCCCCcE
Q 002220 742 ECLTNLETLDLRLCERLKRVSTSICKLKSLGSLLLAFCSNLEGFPEILEKMELLETLDLERTGVKEL-PPSFENLQGLRQ 820 (951)
Q Consensus 742 ~~l~~L~~L~Ls~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~n~i~~l-~~~~~~l~~L~~ 820 (951)
..+++|+.|.|..|++...-...|..|.++++|+|..|+....-...+-++++|+.|++++|.|..+ +++....++|+.
T Consensus 242 qgL~Sl~nlklqrN~I~kL~DG~Fy~l~kme~l~L~~N~l~~vn~g~lfgLt~L~~L~lS~NaI~rih~d~WsftqkL~~ 321 (873)
T KOG4194|consen 242 QGLPSLQNLKLQRNDISKLDDGAFYGLEKMEHLNLETNRLQAVNEGWLFGLTSLEQLDLSYNAIQRIHIDSWSFTQKLKE 321 (873)
T ss_pred cCchhhhhhhhhhcCcccccCcceeeecccceeecccchhhhhhcccccccchhhhhccchhhhheeecchhhhccccee
Confidence 6777777777777766665566677777777777777765555555666777777777777777755 344556667777
Q ss_pred EeeccCCCCccCCcccCCcCCCCCCCCEEeccCCCCCCcCc-cCCCCCCCCEEEccCCCCcc-c---chhhcCCCCCCEE
Q 002220 821 LSLIGCSELKCSGWVLPTRISKLSSLERLQLSGCEIKEIPE-DIDCLSSLEVLDLSGSKIEI-L---PTSIGQLSRLRQL 895 (951)
Q Consensus 821 L~l~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~l~~l~~-~l~~l~~L~~L~L~~n~l~~-l---~~~l~~l~~L~~L 895 (951)
|+|++|.+... .+.+|..+..|+.|+|+.|.+..+.+ .+..+.+|++|||++|.+.. + ...+..+++|+.|
T Consensus 322 LdLs~N~i~~l----~~~sf~~L~~Le~LnLs~Nsi~~l~e~af~~lssL~~LdLr~N~ls~~IEDaa~~f~gl~~LrkL 397 (873)
T KOG4194|consen 322 LDLSSNRITRL----DEGSFRVLSQLEELNLSHNSIDHLAEGAFVGLSSLHKLDLRSNELSWCIEDAAVAFNGLPSLRKL 397 (873)
T ss_pred EeccccccccC----ChhHHHHHHHhhhhcccccchHHHHhhHHHHhhhhhhhcCcCCeEEEEEecchhhhccchhhhhe
Confidence 77777777663 44556667777777777777776543 34567777777777776652 1 1345667777777
Q ss_pred eeCCCCCCCcCCC----ccccccEeeeccCcccccCCCc--Ccchhhhhccccccccc
Q 002220 896 NLLDCNMLQSIPE----LPRGLLRLNAQNCRRLRSLPEL--PSCLEDQDFRNMHLWTD 947 (951)
Q Consensus 896 ~L~~~~~l~~lp~----~~~~L~~L~i~~C~~L~~lp~~--~~~L~~l~~~~~~~~~~ 947 (951)
.+.+ +.++++|. -.++|+.|++.+++--..-|.. |-.|++|.+....+.||
T Consensus 398 ~l~g-Nqlk~I~krAfsgl~~LE~LdL~~NaiaSIq~nAFe~m~Lk~Lv~nSssflCD 454 (873)
T KOG4194|consen 398 RLTG-NQLKSIPKRAFSGLEALEHLDLGDNAIASIQPNAFEPMELKELVMNSSSFLCD 454 (873)
T ss_pred eecC-ceeeecchhhhccCcccceecCCCCcceeecccccccchhhhhhhcccceEEe
Confidence 7776 44566663 3366777777665432222331 22366666655555554
No 11
>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]
Probab=99.92 E-value=1.9e-27 Score=264.52 Aligned_cols=391 Identities=24% Similarity=0.279 Sum_probs=281.8
Q ss_pred ccccCcccceeechhhhccCCCccEEEEcCCCCCCCCccCcceecCcccccCCCcceEEEeecCCCCCCCCcc-ccccce
Q 002220 533 FLNLSQIGDIHLNSRAFANMSNLRLLKFYMPEHRGLPIMSSNVRLDEDLECLPEELRYLYWHEYPLKTLPLDF-DLENLI 611 (951)
Q Consensus 533 ~l~l~~~~~~~~~~~~f~~l~~Lr~L~l~~~~~~~l~~~~~~~~~~~~~~~l~~~L~~L~l~~~~l~~lp~~~-~l~~L~ 611 (951)
.++++.+..+..+-+..++.-+|+.|++++|.+.. ++..+..++ +|+.|+++.|.+++.|... ++.+|+
T Consensus 25 ~ln~~~N~~l~~pl~~~~~~v~L~~l~lsnn~~~~---------fp~~it~l~-~L~~ln~s~n~i~~vp~s~~~~~~l~ 94 (1081)
T KOG0618|consen 25 ILNLRRNSLLSRPLEFVEKRVKLKSLDLSNNQISS---------FPIQITLLS-HLRQLNLSRNYIRSVPSSCSNMRNLQ 94 (1081)
T ss_pred hhhccccccccCchHHhhheeeeEEeecccccccc---------CCchhhhHH-HHhhcccchhhHhhCchhhhhhhcch
Confidence 44455554444445555566669999999886543 333333333 7888888888888888655 788888
Q ss_pred ecccCCccccccccccccccccceeccCCCCCCCcCCCCCCCCC-------------------CcEEecCCCCCCCccCc
Q 002220 612 ALHLPYSEVEQIWKGQKEAFKLKFIDLHDSHNLTSIPEPLEAPN-------------------LERINLCNCTNLSYIPL 672 (951)
Q Consensus 612 ~L~L~~~~i~~l~~~~~~l~~L~~L~L~~~~~~~~~~~~~~l~~-------------------L~~L~L~~~~~~~~~~~ 672 (951)
+|.|.+|.+..+|.++..+++|++|+++.|.+....+-+..+.. ++.+++..+.....++.
T Consensus 95 ~lnL~~n~l~~lP~~~~~lknl~~LdlS~N~f~~~Pl~i~~lt~~~~~~~s~N~~~~~lg~~~ik~~~l~~n~l~~~~~~ 174 (1081)
T KOG0618|consen 95 YLNLKNNRLQSLPASISELKNLQYLDLSFNHFGPIPLVIEVLTAEEELAASNNEKIQRLGQTSIKKLDLRLNVLGGSFLI 174 (1081)
T ss_pred hheeccchhhcCchhHHhhhcccccccchhccCCCchhHHhhhHHHHHhhhcchhhhhhccccchhhhhhhhhcccchhc
Confidence 99999888888888888888999999988876544333323333 34444444444444555
Q ss_pred ccccCCcccEEeccCCCCC----------cccCC--------CCCCCCCceeeCcCCCCCCCCCc-cccceeeccccCCC
Q 002220 673 YVQNFHNLGSLSLKGCKSL----------RCFPR--------NIHFRSPIEIDCAWCVNLTEFPQ-ISGKVVKLRLWYTP 733 (951)
Q Consensus 673 ~~~~l~~L~~L~L~~~~~l----------~~l~~--------~~~l~~L~~L~l~~~~~l~~l~~-~~~~L~~L~l~~~~ 733 (951)
.+.++++ .|+|++|... +.+-. .+..++|+.|..+.|+..+..+. .+.+|+.+++++|.
T Consensus 175 ~i~~l~~--~ldLr~N~~~~~dls~~~~l~~l~c~rn~ls~l~~~g~~l~~L~a~~n~l~~~~~~p~p~nl~~~dis~n~ 252 (1081)
T KOG0618|consen 175 DIYNLTH--QLDLRYNEMEVLDLSNLANLEVLHCERNQLSELEISGPSLTALYADHNPLTTLDVHPVPLNLQYLDISHNN 252 (1081)
T ss_pred chhhhhe--eeecccchhhhhhhhhccchhhhhhhhcccceEEecCcchheeeeccCcceeeccccccccceeeecchhh
Confidence 5555555 5666665433 11110 01345666666677766655554 34589999999999
Q ss_pred CCccCcccccCCCCcEEecccccccccccccccCCCCCCEEeccCCCCCCccchhcccCCCCcEEEcccCCCcccCcccc
Q 002220 734 IEEVPSSIECLTNLETLDLRLCERLKRVSTSICKLKSLGSLLLAFCSNLEGFPEILEKMELLETLDLERTGVKELPPSFE 813 (951)
Q Consensus 734 l~~lp~~l~~l~~L~~L~Ls~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~n~i~~l~~~~~ 813 (951)
+..+|++++.+.+|+.|+..+|.+ ..+|..+..+++|+.|.+..|. ++.+|...+.+++|++|+|..|.+..+|..+.
T Consensus 253 l~~lp~wi~~~~nle~l~~n~N~l-~~lp~ri~~~~~L~~l~~~~ne-l~yip~~le~~~sL~tLdL~~N~L~~lp~~~l 330 (1081)
T KOG0618|consen 253 LSNLPEWIGACANLEALNANHNRL-VALPLRISRITSLVSLSAAYNE-LEYIPPFLEGLKSLRTLDLQSNNLPSLPDNFL 330 (1081)
T ss_pred hhcchHHHHhcccceEecccchhH-HhhHHHHhhhhhHHHHHhhhhh-hhhCCCcccccceeeeeeehhccccccchHHH
Confidence 999999999999999999999877 6778788888899999888886 45667777888899999999988887775321
Q ss_pred --------------------------CCCCCcEEeeccCCCCccCCcccCCcCCCCCCCCEEeccCCCCCCcCcc-CCCC
Q 002220 814 --------------------------NLQGLRQLSLIGCSELKCSGWVLPTRISKLSSLERLQLSGCEIKEIPED-IDCL 866 (951)
Q Consensus 814 --------------------------~l~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~l~~l~~~-l~~l 866 (951)
.++.|+.|++.+|..... .+| .+.++.+|+.|+|++|++.++|.. +.++
T Consensus 331 ~v~~~~l~~ln~s~n~l~~lp~~~e~~~~~Lq~LylanN~Ltd~---c~p-~l~~~~hLKVLhLsyNrL~~fpas~~~kl 406 (1081)
T KOG0618|consen 331 AVLNASLNTLNVSSNKLSTLPSYEENNHAALQELYLANNHLTDS---CFP-VLVNFKHLKVLHLSYNRLNSFPASKLRKL 406 (1081)
T ss_pred hhhhHHHHHHhhhhccccccccccchhhHHHHHHHHhcCccccc---chh-hhccccceeeeeecccccccCCHHHHhch
Confidence 223466667777666553 233 478889999999999999998864 5788
Q ss_pred CCCCEEEccCCCCcccchhhcCCCCCCEEeeCCCCCCCcCCCc--cccccEeeeccCcccccC--CC-cC-cchhhhhcc
Q 002220 867 SSLEVLDLSGSKIEILPTSIGQLSRLRQLNLLDCNMLQSIPEL--PRGLLRLNAQNCRRLRSL--PE-LP-SCLEDQDFR 940 (951)
Q Consensus 867 ~~L~~L~L~~n~l~~l~~~l~~l~~L~~L~L~~~~~l~~lp~~--~~~L~~L~i~~C~~L~~l--p~-~~-~~L~~l~~~ 940 (951)
..|++|+||||+++.+|..+..++.|+.|...+ +.+.++|++ .++|+.++++ |..|+.+ |. +| +.|++||++
T Consensus 407 e~LeeL~LSGNkL~~Lp~tva~~~~L~tL~ahs-N~l~~fPe~~~l~qL~~lDlS-~N~L~~~~l~~~~p~p~LkyLdlS 484 (1081)
T KOG0618|consen 407 EELEELNLSGNKLTTLPDTVANLGRLHTLRAHS-NQLLSFPELAQLPQLKVLDLS-CNNLSEVTLPEALPSPNLKYLDLS 484 (1081)
T ss_pred HHhHHHhcccchhhhhhHHHHhhhhhHHHhhcC-CceeechhhhhcCcceEEecc-cchhhhhhhhhhCCCcccceeecc
Confidence 899999999999999998899999999998766 566777764 3788899886 6777754 33 66 779999999
Q ss_pred ccc
Q 002220 941 NMH 943 (951)
Q Consensus 941 ~~~ 943 (951)
+|.
T Consensus 485 GN~ 487 (1081)
T KOG0618|consen 485 GNT 487 (1081)
T ss_pred CCc
Confidence 886
No 12
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=99.92 E-value=2.4e-23 Score=261.46 Aligned_cols=333 Identities=26% Similarity=0.313 Sum_probs=269.5
Q ss_pred ccCCCcceEEEeecCCCC-------CCCCcc--ccccceecccCCccccccccccccccccceeccCCCCCCCcCCCCCC
Q 002220 582 ECLPEELRYLYWHEYPLK-------TLPLDF--DLENLIALHLPYSEVEQIWKGQKEAFKLKFIDLHDSHNLTSIPEPLE 652 (951)
Q Consensus 582 ~~l~~~L~~L~l~~~~l~-------~lp~~~--~l~~L~~L~L~~~~i~~l~~~~~~l~~L~~L~L~~~~~~~~~~~~~~ 652 (951)
+.-..+|+.|.+..+... .+|..+ -+.+|+.|++.++.++.+|..+ ...+|+.|++++|.+......+..
T Consensus 554 F~~m~~L~~L~~~~~~~~~~~~~~~~lp~~~~~lp~~Lr~L~~~~~~l~~lP~~f-~~~~L~~L~L~~s~l~~L~~~~~~ 632 (1153)
T PLN03210 554 FKGMRNLLFLKFYTKKWDQKKEVRWHLPEGFDYLPPKLRLLRWDKYPLRCMPSNF-RPENLVKLQMQGSKLEKLWDGVHS 632 (1153)
T ss_pred HhcCccccEEEEecccccccccceeecCcchhhcCcccEEEEecCCCCCCCCCcC-CccCCcEEECcCcccccccccccc
Confidence 333458999988765322 356555 3467999999999999999887 468999999999986554455668
Q ss_pred CCCCcEEecCCCCCCCccCcccccCCcccEEeccCCCCCcccCCCC-CCCCCceeeCcCCCCCCCCCcc--ccceeeccc
Q 002220 653 APNLERINLCNCTNLSYIPLYVQNFHNLGSLSLKGCKSLRCFPRNI-HFRSPIEIDCAWCVNLTEFPQI--SGKVVKLRL 729 (951)
Q Consensus 653 l~~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~L~~~~~l~~l~~~~-~l~~L~~L~l~~~~~l~~l~~~--~~~L~~L~l 729 (951)
+++|+.|+|++|..+..+|. +..+++|++|+|++|..+..+|..+ .+++|+.|++++|..++.+|.. ..+|+.|++
T Consensus 633 l~~Lk~L~Ls~~~~l~~ip~-ls~l~~Le~L~L~~c~~L~~lp~si~~L~~L~~L~L~~c~~L~~Lp~~i~l~sL~~L~L 711 (1153)
T PLN03210 633 LTGLRNIDLRGSKNLKEIPD-LSMATNLETLKLSDCSSLVELPSSIQYLNKLEDLDMSRCENLEILPTGINLKSLYRLNL 711 (1153)
T ss_pred CCCCCEEECCCCCCcCcCCc-cccCCcccEEEecCCCCccccchhhhccCCCCEEeCCCCCCcCccCCcCCCCCCCEEeC
Confidence 99999999999988888885 8889999999999999999999887 7999999999999999999874 468899999
Q ss_pred cCCC-CCccCcccccCCCCcEEecccccccccccccccCCCCCCEEeccCCCCCCc-------cchhcccCCCCcEEEcc
Q 002220 730 WYTP-IEEVPSSIECLTNLETLDLRLCERLKRVSTSICKLKSLGSLLLAFCSNLEG-------FPEILEKMELLETLDLE 801 (951)
Q Consensus 730 ~~~~-l~~lp~~l~~l~~L~~L~Ls~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~-------~~~~l~~l~~L~~L~l~ 801 (951)
+++. +..+|.. .++|+.|+|++|.+ ..+|..+ .+++|++|.+.++..... .+.....+++|+.|+++
T Consensus 712 sgc~~L~~~p~~---~~nL~~L~L~~n~i-~~lP~~~-~l~~L~~L~l~~~~~~~l~~~~~~l~~~~~~~~~sL~~L~Ls 786 (1153)
T PLN03210 712 SGCSRLKSFPDI---STNISWLDLDETAI-EEFPSNL-RLENLDELILCEMKSEKLWERVQPLTPLMTMLSPSLTRLFLS 786 (1153)
T ss_pred CCCCCccccccc---cCCcCeeecCCCcc-ccccccc-cccccccccccccchhhccccccccchhhhhccccchheeCC
Confidence 9874 4455542 46899999998874 4566654 688999999887543211 11223345789999999
Q ss_pred cCC-CcccCccccCCCCCcEEeeccCCCCccCCcccCCcCCCCCCCCEEeccCCCCC-CcCccCCCCCCCCEEEccCCCC
Q 002220 802 RTG-VKELPPSFENLQGLRQLSLIGCSELKCSGWVLPTRISKLSSLERLQLSGCEIK-EIPEDIDCLSSLEVLDLSGSKI 879 (951)
Q Consensus 802 ~n~-i~~l~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~l~-~l~~~l~~l~~L~~L~L~~n~l 879 (951)
+|. +..+|.+++++++|+.|+|++|.... .+|... ++++|+.|++++|... .+|.. .++|+.|+|++|.+
T Consensus 787 ~n~~l~~lP~si~~L~~L~~L~Ls~C~~L~----~LP~~~-~L~sL~~L~Ls~c~~L~~~p~~---~~nL~~L~Ls~n~i 858 (1153)
T PLN03210 787 DIPSLVELPSSIQNLHKLEHLEIENCINLE----TLPTGI-NLESLESLDLSGCSRLRTFPDI---STNISDLNLSRTGI 858 (1153)
T ss_pred CCCCccccChhhhCCCCCCEEECCCCCCcC----eeCCCC-CccccCEEECCCCCcccccccc---ccccCEeECCCCCC
Confidence 985 45789999999999999999998776 366655 7899999999998644 45543 46899999999999
Q ss_pred cccchhhcCCCCCCEEeeCCCCCCCcCCCcc---ccccEeeeccCcccccCCC
Q 002220 880 EILPTSIGQLSRLRQLNLLDCNMLQSIPELP---RGLLRLNAQNCRRLRSLPE 929 (951)
Q Consensus 880 ~~l~~~l~~l~~L~~L~L~~~~~l~~lp~~~---~~L~~L~i~~C~~L~~lp~ 929 (951)
+.+|.++..+++|+.|+|++|+.++.+|..+ ++|+.|++.+|++|+.++.
T Consensus 859 ~~iP~si~~l~~L~~L~L~~C~~L~~l~~~~~~L~~L~~L~l~~C~~L~~~~l 911 (1153)
T PLN03210 859 EEVPWWIEKFSNLSFLDMNGCNNLQRVSLNISKLKHLETVDFSDCGALTEASW 911 (1153)
T ss_pred ccChHHHhcCCCCCEEECCCCCCcCccCcccccccCCCeeecCCCcccccccC
Confidence 9999999999999999999999999998643 6788889999999987654
No 13
>KOG0472 consensus Leucine-rich repeat protein [Function unknown]
Probab=99.91 E-value=1.1e-27 Score=241.88 Aligned_cols=244 Identities=22% Similarity=0.269 Sum_probs=150.1
Q ss_pred hhhccCCCccEEEEcCCCCCCCCccCcceecCcccccCCCcceEEEeecCCCCCCCCcc-ccccceecccCCcccccccc
Q 002220 547 RAFANMSNLRLLKFYMPEHRGLPIMSSNVRLDEDLECLPEELRYLYWHEYPLKTLPLDF-DLENLIALHLPYSEVEQIWK 625 (951)
Q Consensus 547 ~~f~~l~~Lr~L~l~~~~~~~l~~~~~~~~~~~~~~~l~~~L~~L~l~~~~l~~lp~~~-~l~~L~~L~L~~~~i~~l~~ 625 (951)
....++..|.+|.+++|.... ++..+..+ ..+..|+.+.|++..+|... .+.+|+.++.++|.+..+++
T Consensus 62 ~dl~nL~~l~vl~~~~n~l~~---------lp~aig~l-~~l~~l~vs~n~ls~lp~~i~s~~~l~~l~~s~n~~~el~~ 131 (565)
T KOG0472|consen 62 EDLKNLACLTVLNVHDNKLSQ---------LPAAIGEL-EALKSLNVSHNKLSELPEQIGSLISLVKLDCSSNELKELPD 131 (565)
T ss_pred HhhhcccceeEEEeccchhhh---------CCHHHHHH-HHHHHhhcccchHhhccHHHhhhhhhhhhhccccceeecCc
Confidence 345566666666666654322 22222222 14555666666666666544 56666666666666666666
Q ss_pred ccccccccceeccCCCCCCCcCCCCCCCCCCcEEecCCCCCCCccCcccccCCcccEEeccCCCCCcccCCCC-CCCCCc
Q 002220 626 GQKEAFKLKFIDLHDSHNLTSIPEPLEAPNLERINLCNCTNLSYIPLYVQNFHNLGSLSLKGCKSLRCFPRNI-HFRSPI 704 (951)
Q Consensus 626 ~~~~l~~L~~L~L~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~L~~~~~l~~l~~~~-~l~~L~ 704 (951)
+++.+..|..++..+|.+.+..+++..+.+|..|++.+|+.. .+|...-+++.|++|+... +.++.+|+.+ ++.+|.
T Consensus 132 ~i~~~~~l~dl~~~~N~i~slp~~~~~~~~l~~l~~~~n~l~-~l~~~~i~m~~L~~ld~~~-N~L~tlP~~lg~l~~L~ 209 (565)
T KOG0472|consen 132 SIGRLLDLEDLDATNNQISSLPEDMVNLSKLSKLDLEGNKLK-ALPENHIAMKRLKHLDCNS-NLLETLPPELGGLESLE 209 (565)
T ss_pred hHHHHhhhhhhhccccccccCchHHHHHHHHHHhhccccchh-hCCHHHHHHHHHHhcccch-hhhhcCChhhcchhhhH
Confidence 666666666666666666655556666666666666665433 3333333366777776655 4566666665 566666
Q ss_pred eeeCcCCCCCCCCCcccc--ceeeccccCCCCCccCcccc-cCCCCcEEecccccccccccccccCCCCCCEEeccCCCC
Q 002220 705 EIDCAWCVNLTEFPQISG--KVVKLRLWYTPIEEVPSSIE-CLTNLETLDLRLCERLKRVSTSICKLKSLGSLLLAFCSN 781 (951)
Q Consensus 705 ~L~l~~~~~l~~l~~~~~--~L~~L~l~~~~l~~lp~~l~-~l~~L~~L~Ls~~~~~~~~~~~~~~l~~L~~L~l~~~~~ 781 (951)
-|++.. +++..+|.+.+ .|.+|+++.|.++.+|.... ++++|..|||.+|+ ++..|..++.+.+|+.|++++|.
T Consensus 210 ~LyL~~-Nki~~lPef~gcs~L~Elh~g~N~i~~lpae~~~~L~~l~vLDLRdNk-lke~Pde~clLrsL~rLDlSNN~- 286 (565)
T KOG0472|consen 210 LLYLRR-NKIRFLPEFPGCSLLKELHVGENQIEMLPAEHLKHLNSLLVLDLRDNK-LKEVPDEICLLRSLERLDLSNND- 286 (565)
T ss_pred HHHhhh-cccccCCCCCccHHHHHHHhcccHHHhhHHHHhcccccceeeeccccc-cccCchHHHHhhhhhhhcccCCc-
Confidence 666655 44555665443 46677777777777776544 67777777777664 45667777777777777777765
Q ss_pred CCccchhcccCCCCcEEEcccCCCc
Q 002220 782 LEGFPEILEKMELLETLDLERTGVK 806 (951)
Q Consensus 782 ~~~~~~~l~~l~~L~~L~l~~n~i~ 806 (951)
++.+|..++++ .|+.|.+.+|.+.
T Consensus 287 is~Lp~sLgnl-hL~~L~leGNPlr 310 (565)
T KOG0472|consen 287 ISSLPYSLGNL-HLKFLALEGNPLR 310 (565)
T ss_pred cccCCcccccc-eeeehhhcCCchH
Confidence 34566667777 7777777776554
No 14
>KOG0472 consensus Leucine-rich repeat protein [Function unknown]
Probab=99.91 E-value=1e-26 Score=235.06 Aligned_cols=368 Identities=24% Similarity=0.266 Sum_probs=222.6
Q ss_pred ccccCcccceeechhhhccCCCccEEEEcCCCCCCCCccCcceecCcccccCCCcceEEEeecCCCCCCCCcc-ccccce
Q 002220 533 FLNLSQIGDIHLNSRAFANMSNLRLLKFYMPEHRGLPIMSSNVRLDEDLECLPEELRYLYWHEYPLKTLPLDF-DLENLI 611 (951)
Q Consensus 533 ~l~l~~~~~~~~~~~~f~~l~~Lr~L~l~~~~~~~l~~~~~~~~~~~~~~~l~~~L~~L~l~~~~l~~lp~~~-~l~~L~ 611 (951)
.++..++....+ +.+.+.+..++.|+.+.|.+..+|. .+..++ +|+.|+++.|.++.+|+.+ .+..|.
T Consensus 72 vl~~~~n~l~~l-p~aig~l~~l~~l~vs~n~ls~lp~---------~i~s~~-~l~~l~~s~n~~~el~~~i~~~~~l~ 140 (565)
T KOG0472|consen 72 VLNVHDNKLSQL-PAAIGELEALKSLNVSHNKLSELPE---------QIGSLI-SLVKLDCSSNELKELPDSIGRLLDLE 140 (565)
T ss_pred EEEeccchhhhC-CHHHHHHHHHHHhhcccchHhhccH---------HHhhhh-hhhhhhccccceeecCchHHHHhhhh
Confidence 445555544444 4456778888888888886544443 333333 5667777777777776655 566677
Q ss_pred ecccCCccccccccccccccccceeccCCCCCCCcCCCCCCCCCCcEEecCCCCCCCccCcccccCCcccEEeccCCCCC
Q 002220 612 ALHLPYSEVEQIWKGQKEAFKLKFIDLHDSHNLTSIPEPLEAPNLERINLCNCTNLSYIPLYVQNFHNLGSLSLKGCKSL 691 (951)
Q Consensus 612 ~L~L~~~~i~~l~~~~~~l~~L~~L~L~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~L~~~~~l 691 (951)
.++..+|++.++|.++..+.+|..+++.+|+.....|+...++.|++|+... +.++.+|..++.+.+|..|++.. +.+
T Consensus 141 dl~~~~N~i~slp~~~~~~~~l~~l~~~~n~l~~l~~~~i~m~~L~~ld~~~-N~L~tlP~~lg~l~~L~~LyL~~-Nki 218 (565)
T KOG0472|consen 141 DLDATNNQISSLPEDMVNLSKLSKLDLEGNKLKALPENHIAMKRLKHLDCNS-NLLETLPPELGGLESLELLYLRR-NKI 218 (565)
T ss_pred hhhccccccccCchHHHHHHHHHHhhccccchhhCCHHHHHHHHHHhcccch-hhhhcCChhhcchhhhHHHHhhh-ccc
Confidence 7777777777777777777777777777776666666555667777777665 35666777777777777777766 455
Q ss_pred cccCCCCCCCCCceeeCcCCCCCCCCCc----cccceeeccccCCCCCccCcccccCCCCcEEecccccccccccccccC
Q 002220 692 RCFPRNIHFRSPIEIDCAWCVNLTEFPQ----ISGKVVKLRLWYTPIEEVPSSIECLTNLETLDLRLCERLKRVSTSICK 767 (951)
Q Consensus 692 ~~l~~~~~l~~L~~L~l~~~~~l~~l~~----~~~~L~~L~l~~~~l~~lp~~l~~l~~L~~L~Ls~~~~~~~~~~~~~~ 767 (951)
..+|..-++..|.++.++. +.++.+|. ...++..|+|..|.++++|..+.-+++|..||+|+|.+ ..+|.++++
T Consensus 219 ~~lPef~gcs~L~Elh~g~-N~i~~lpae~~~~L~~l~vLDLRdNklke~Pde~clLrsL~rLDlSNN~i-s~Lp~sLgn 296 (565)
T KOG0472|consen 219 RFLPEFPGCSLLKELHVGE-NQIEMLPAEHLKHLNSLLVLDLRDNKLKEVPDEICLLRSLERLDLSNNDI-SSLPYSLGN 296 (565)
T ss_pred ccCCCCCccHHHHHHHhcc-cHHHhhHHHHhcccccceeeeccccccccCchHHHHhhhhhhhcccCCcc-ccCCccccc
Confidence 6666444555566555544 33444443 22345555666666666666665566666666664432 344555555
Q ss_pred CCCCCEEeccCCCC----------------------------------------------------------------CC
Q 002220 768 LKSLGSLLLAFCSN----------------------------------------------------------------LE 783 (951)
Q Consensus 768 l~~L~~L~l~~~~~----------------------------------------------------------------~~ 783 (951)
+ +|+.|.+.||+. .+
T Consensus 297 l-hL~~L~leGNPlrTiRr~ii~~gT~~vLKyLrs~~~~dglS~se~~~e~~~t~~~~~~~~~~~~i~tkiL~~s~~qlt 375 (565)
T KOG0472|consen 297 L-HLKFLALEGNPLRTIRREIISKGTQEVLKYLRSKIKDDGLSQSEGGTETAMTLPSESFPDIYAIITTKILDVSDKQLT 375 (565)
T ss_pred c-eeeehhhcCCchHHHHHHHHcccHHHHHHHHHHhhccCCCCCCcccccccCCCCCCcccchhhhhhhhhhcccccccc
Confidence 5 555555554432 11
Q ss_pred ccchh-ccc--CCCCcEEEcccCCCcccC------------------------ccccCCCCCcEEeeccCCCCccCCccc
Q 002220 784 GFPEI-LEK--MELLETLDLERTGVKELP------------------------PSFENLQGLRQLSLIGCSELKCSGWVL 836 (951)
Q Consensus 784 ~~~~~-l~~--l~~L~~L~l~~n~i~~l~------------------------~~~~~l~~L~~L~l~~~~~~~~~~~~~ 836 (951)
.+|.. |.. -.-....+++.|++.++| ..+..+++|..|++++|.... +
T Consensus 376 ~VPdEVfea~~~~~Vt~VnfskNqL~elPk~L~~lkelvT~l~lsnn~isfv~~~l~~l~kLt~L~L~NN~Ln~-----L 450 (565)
T KOG0472|consen 376 LVPDEVFEAAKSEIVTSVNFSKNQLCELPKRLVELKELVTDLVLSNNKISFVPLELSQLQKLTFLDLSNNLLND-----L 450 (565)
T ss_pred cCCHHHHHHhhhcceEEEecccchHhhhhhhhHHHHHHHHHHHhhcCccccchHHHHhhhcceeeecccchhhh-----c
Confidence 11111 100 001233444444444444 234567888889998887776 7
Q ss_pred CCcCCCCCCCCEEeccCCCCCCcCccCCCCCCCCEEEccCCCCcccchh-hcCCCCCCEEeeCCCCCCCcCCC---cccc
Q 002220 837 PTRISKLSSLERLQLSGCEIKEIPEDIDCLSSLEVLDLSGSKIEILPTS-IGQLSRLRQLNLLDCNMLQSIPE---LPRG 912 (951)
Q Consensus 837 ~~~~~~l~~L~~L~L~~~~l~~l~~~l~~l~~L~~L~L~~n~l~~l~~~-l~~l~~L~~L~L~~~~~l~~lp~---~~~~ 912 (951)
|..++.+..|+.|+++.|++..+|..+..+..|+.+-.++|++..++.+ +.++.+|..|+|.+ +.++.+|. -..+
T Consensus 451 P~e~~~lv~Lq~LnlS~NrFr~lP~~~y~lq~lEtllas~nqi~~vd~~~l~nm~nL~tLDL~n-Ndlq~IPp~Lgnmtn 529 (565)
T KOG0472|consen 451 PEEMGSLVRLQTLNLSFNRFRMLPECLYELQTLETLLASNNQIGSVDPSGLKNMRNLTTLDLQN-NDLQQIPPILGNMTN 529 (565)
T ss_pred chhhhhhhhhheecccccccccchHHHhhHHHHHHHHhccccccccChHHhhhhhhcceeccCC-CchhhCChhhccccc
Confidence 7778888889999999888887777665555566666666666666533 66666666666655 34444553 2356
Q ss_pred ccEeeeccCc
Q 002220 913 LLRLNAQNCR 922 (951)
Q Consensus 913 L~~L~i~~C~ 922 (951)
|++|+++|.|
T Consensus 530 L~hLeL~gNp 539 (565)
T KOG0472|consen 530 LRHLELDGNP 539 (565)
T ss_pred eeEEEecCCc
Confidence 6666666655
No 15
>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]
Probab=99.84 E-value=1e-22 Score=227.22 Aligned_cols=393 Identities=20% Similarity=0.250 Sum_probs=265.9
Q ss_pred ccCcccceeechhhhccCCCccEEEEcCCCCCCCCccCcceecCcccccCCCcceEEEeecCCCCCCCCcc-ccccceec
Q 002220 535 NLSQIGDIHLNSRAFANMSNLRLLKFYMPEHRGLPIMSSNVRLDEDLECLPEELRYLYWHEYPLKTLPLDF-DLENLIAL 613 (951)
Q Consensus 535 ~l~~~~~~~~~~~~f~~l~~Lr~L~l~~~~~~~l~~~~~~~~~~~~~~~l~~~L~~L~l~~~~l~~lp~~~-~l~~L~~L 613 (951)
|.+......++...|-.-. +..|++..|.....|- +.... .-+|+.|++++|.+.++|..+ .+.+|+.|
T Consensus 4 d~s~~~l~~ip~~i~~~~~-~~~ln~~~N~~l~~pl--------~~~~~-~v~L~~l~lsnn~~~~fp~~it~l~~L~~l 73 (1081)
T KOG0618|consen 4 DASDEQLELIPEQILNNEA-LQILNLRRNSLLSRPL--------EFVEK-RVKLKSLDLSNNQISSFPIQITLLSHLRQL 73 (1081)
T ss_pred ccccccCcccchhhccHHH-HHhhhccccccccCch--------HHhhh-eeeeEEeeccccccccCCchhhhHHHHhhc
Confidence 3333333344444444434 7777777765432221 11111 224999999999999999776 78999999
Q ss_pred ccCCccccccccccccccccceeccCCCCCCCcCCCCCCCCCCcEEecCCCCCCCccCcccccCCcccEEeccCCCCC--
Q 002220 614 HLPYSEVEQIWKGQKEAFKLKFIDLHDSHNLTSIPEPLEAPNLERINLCNCTNLSYIPLYVQNFHNLGSLSLKGCKSL-- 691 (951)
Q Consensus 614 ~L~~~~i~~l~~~~~~l~~L~~L~L~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~L~~~~~l-- 691 (951)
+++.|.|.++|....++.+|++|+|.+|........+..+.+|++|+++.|. ....|..+..++.+..+..++|..+
T Consensus 74 n~s~n~i~~vp~s~~~~~~l~~lnL~~n~l~~lP~~~~~lknl~~LdlS~N~-f~~~Pl~i~~lt~~~~~~~s~N~~~~~ 152 (1081)
T KOG0618|consen 74 NLSRNYIRSVPSSCSNMRNLQYLNLKNNRLQSLPASISELKNLQYLDLSFNH-FGPIPLVIEVLTAEEELAASNNEKIQR 152 (1081)
T ss_pred ccchhhHhhCchhhhhhhcchhheeccchhhcCchhHHhhhcccccccchhc-cCCCchhHHhhhHHHHHhhhcchhhhh
Confidence 9999999999999999999999999998654444466689999999999965 4455555555555555555554222
Q ss_pred -----------------cccCCCC-CCCCCceeeCc----------CCCCCCCCCccc----------cceeeccccCCC
Q 002220 692 -----------------RCFPRNI-HFRSPIEIDCA----------WCVNLTEFPQIS----------GKVVKLRLWYTP 733 (951)
Q Consensus 692 -----------------~~l~~~~-~l~~L~~L~l~----------~~~~l~~l~~~~----------~~L~~L~l~~~~ 733 (951)
..++..+ .+.. .|+++ .|.+++.+-... .+++.|+.++|.
T Consensus 153 lg~~~ik~~~l~~n~l~~~~~~~i~~l~~--~ldLr~N~~~~~dls~~~~l~~l~c~rn~ls~l~~~g~~l~~L~a~~n~ 230 (1081)
T KOG0618|consen 153 LGQTSIKKLDLRLNVLGGSFLIDIYNLTH--QLDLRYNEMEVLDLSNLANLEVLHCERNQLSELEISGPSLTALYADHNP 230 (1081)
T ss_pred hccccchhhhhhhhhcccchhcchhhhhe--eeecccchhhhhhhhhccchhhhhhhhcccceEEecCcchheeeeccCc
Confidence 2232222 1121 23333 333333222111 233344444444
Q ss_pred CCccCcccccCCCCcEEecccccccccccccccCCCCCCEEeccCCCCCCccchhcccCCCCcEEEcccCCCcccCcccc
Q 002220 734 IEEVPSSIECLTNLETLDLRLCERLKRVSTSICKLKSLGSLLLAFCSNLEGFPEILEKMELLETLDLERTGVKELPPSFE 813 (951)
Q Consensus 734 l~~lp~~l~~l~~L~~L~Ls~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~n~i~~l~~~~~ 813 (951)
+..+-. -..-.+|+++++++|.+ ..+|+.++.+.+|+.|...+|.. ..+|..+...++|+.|.+..|.+..+|....
T Consensus 231 l~~~~~-~p~p~nl~~~dis~n~l-~~lp~wi~~~~nle~l~~n~N~l-~~lp~ri~~~~~L~~l~~~~nel~yip~~le 307 (1081)
T KOG0618|consen 231 LTTLDV-HPVPLNLQYLDISHNNL-SNLPEWIGACANLEALNANHNRL-VALPLRISRITSLVSLSAAYNELEYIPPFLE 307 (1081)
T ss_pred ceeecc-ccccccceeeecchhhh-hcchHHHHhcccceEecccchhH-HhhHHHHhhhhhHHHHHhhhhhhhhCCCccc
Confidence 432211 12235788888888765 44568888899999999888875 6677778888899999999999999998888
Q ss_pred CCCCCcEEeeccCCCCccCCc--------------------ccCC-cCCCCCCCCEEeccCCCCCC-cCccCCCCCCCCE
Q 002220 814 NLQGLRQLSLIGCSELKCSGW--------------------VLPT-RISKLSSLERLQLSGCEIKE-IPEDIDCLSSLEV 871 (951)
Q Consensus 814 ~l~~L~~L~l~~~~~~~~~~~--------------------~~~~-~~~~l~~L~~L~L~~~~l~~-l~~~l~~l~~L~~ 871 (951)
.+++|++|+|..|.+...... ..|. .-..++.|+.|.+.+|.+++ .-..+.++.+|+.
T Consensus 308 ~~~sL~tLdL~~N~L~~lp~~~l~v~~~~l~~ln~s~n~l~~lp~~~e~~~~~Lq~LylanN~Ltd~c~p~l~~~~hLKV 387 (1081)
T KOG0618|consen 308 GLKSLRTLDLQSNNLPSLPDNFLAVLNASLNTLNVSSNKLSTLPSYEENNHAALQELYLANNHLTDSCFPVLVNFKHLKV 387 (1081)
T ss_pred ccceeeeeeehhccccccchHHHhhhhHHHHHHhhhhccccccccccchhhHHHHHHHHhcCcccccchhhhccccceee
Confidence 899999999999887764310 0010 00123457778888888885 3335778899999
Q ss_pred EEccCCCCcccc-hhhcCCCCCCEEeeCCCCCCCcCCCc---cccccEeeeccCcccccCCCcC--cchhhhhccccccc
Q 002220 872 LDLSGSKIEILP-TSIGQLSRLRQLNLLDCNMLQSIPEL---PRGLLRLNAQNCRRLRSLPELP--SCLEDQDFRNMHLW 945 (951)
Q Consensus 872 L~L~~n~l~~l~-~~l~~l~~L~~L~L~~~~~l~~lp~~---~~~L~~L~i~~C~~L~~lp~~~--~~L~~l~~~~~~~~ 945 (951)
|+|++|++.++| ..+.+++.|+.|+|++ ++|+.+|+- .+.|++|...+ ..|..+|++. ++|+.+|++.|++-
T Consensus 388 LhLsyNrL~~fpas~~~kle~LeeL~LSG-NkL~~Lp~tva~~~~L~tL~ahs-N~l~~fPe~~~l~qL~~lDlS~N~L~ 465 (1081)
T KOG0618|consen 388 LHLSYNRLNSFPASKLRKLEELEELNLSG-NKLTTLPDTVANLGRLHTLRAHS-NQLLSFPELAQLPQLKVLDLSCNNLS 465 (1081)
T ss_pred eeecccccccCCHHHHhchHHhHHHhccc-chhhhhhHHHHhhhhhHHHhhcC-CceeechhhhhcCcceEEecccchhh
Confidence 999999999999 5678899999999999 567888853 36677776654 5677778743 46999999988753
No 16
>PF01582 TIR: TIR domain; InterPro: IPR000157 In Drosophila melanogaster the Toll protein is involved in establishment of dorso-ventral polarity in the embryo. In addition, members of the Toll family play a key role in innate antibacterial and antifungal immunity in insects as well as in mammals. These proteins are type-I transmembrane receptors that share an intracellular 200 residue domain with the interleukin-1 receptor (IL-1R), the Toll/IL-1R homologous region (TIR). The similarity between Toll-like receptors (LTRs) and IL-1R is not restricted to sequence homology since these proteins also share a similar signalling pathway. They both induce the activation of a Rel type transcription factor via an adaptor protein and a protein kinase []. Interestingly, MyD88, a cytoplasmic adaptor protein found in mammals, contains a TIR domain associated to a DEATH domain (see IPR000488 from INTERPRO) [, , ]. Besides the mammalian and Drosophila melanogaster proteins, a TIR domain is also found in a number of plant proteins implicated in host defence []. As MyD88, these proteins are cytoplasmic. Site directed mutagenesis and deletion analysis have shown that the TIR domain is essential for Toll and IL-1R activities. Sequence analysis have revealed the presence of three highly conserved regions among the different members of the family: box 1 (FDAFISY), box 2 (GYKLC-RD-PG), and box 3 (a conserved W surrounded by basic residues). It has been proposed that boxes 1 and 2 are involved in the binding of proteins involved in signalling, whereas box 3 is primarily involved in directing localization of receptor, perhaps through interactions with cytoskeletal elements [].; GO: 0005515 protein binding, 0007165 signal transduction, 0005622 intracellular; PDB: 3J0A_A 2J67_B 3JRN_A 1FYV_A 1O77_D 1FYX_A 1FYW_A 3OZI_B 1T3G_B 2JS7_A ....
Probab=99.81 E-value=1.1e-20 Score=177.89 Aligned_cols=133 Identities=34% Similarity=0.597 Sum_probs=113.2
Q ss_pred EEEcccccccccchHHHHHHHHHhC--CCeEEecCcccCCCCCchHHHHHHhhccceEEEEecCCcccchhhHHHHHHHH
Q 002220 13 VFLSFRGEDTRDNFTSHLYAALCRK--KIKTFIDDEELRRGDDISPALLNAIQGSKISVIIFSKDYASSKWCLDELVKIL 90 (951)
Q Consensus 13 vfis~~~~d~~~~~~~~l~~~L~~~--g~~~~~d~~~~~~g~~~~~~~~~~i~~s~~~i~v~s~~~~~s~wc~~el~~~~ 90 (951)
|||||++.|.+..|+.+|..+|++. |+++|++++|+.+|..+.++|.++|++||++|+|+|++|++|.||+.|+..|+
T Consensus 1 vfisy~~~~d~~~~~~~L~~~Le~~~~g~~~c~~~rD~~~G~~~~~~i~~~i~~Sr~~I~VlS~~y~~s~wc~~el~~a~ 80 (141)
T PF01582_consen 1 VFISYSGKDDREWFVSHLLPELEERPYGYKLCLDERDFLPGESILDNIQEAIERSRRTIVVLSRNYLSSEWCLFELQEAL 80 (141)
T ss_dssp EEEEE-GHHGHHHHHHCHHHHHHCTSSTS-EEEHHHCTSSSSCHHHHHHHHHHTEEEEEEEESHHHHHHTHHHHHHHHHH
T ss_pred cEEEeCCCCcHHHHHHHHHHHHHhCCCCeEEEEechhhcccccccchhhHhhhhceeeEEEeecccccccchhhhhhhhh
Confidence 8999999444578999999999999 99999999999999999999999999999999999999999999999999999
Q ss_pred HhhhcCC--CeEEEEEeecCCcccc-cccccHHHHHHHHHHHhCCC--hHHHHHHHHHHH
Q 002220 91 DCKNLNG--QMVVPVFYQVDPSDVR-KQTGCFRDAFVKHQKQFKDM--PEKAQNWKAALT 145 (951)
Q Consensus 91 ~~~~~~~--~~~~pv~~~~~p~~vr-~~~~~~~~~~~~~~~~~~~~--~~~~~~w~~al~ 145 (951)
++....+ +.|+|+++++.+++++ .+.+.+...+........+. ......|++++.
T Consensus 81 ~~~~~~~~~~~Il~v~~~v~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~fW~~l~~ 140 (141)
T PF01582_consen 81 ERLLEEGRDKLILPVFYDVSPSDVRPDQSLRFLLRFLTYLRWPDDDSREDRSWFWKKLRY 140 (141)
T ss_dssp HHHHCSTCTTEEEEESSSS-CHHCHTHHHHHHHHHCTHCEETSSSGGGGGHHHHHHHHHH
T ss_pred hhccccccccceeeEeccCChhhcChhhhHHHHHHhhhheeCCCCCCccHHHHHHHHHhc
Confidence 9996654 7899999999999999 68888887776665544333 467788988764
No 17
>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional
Probab=99.80 E-value=2.9e-19 Score=207.38 Aligned_cols=256 Identities=21% Similarity=0.272 Sum_probs=123.7
Q ss_pred EEEeecCCCCCCCCccccccceecccCCccccccccccccccccceeccCCCCCCCcCCCCCCCCCCcEEecCCCCCCCc
Q 002220 590 YLYWHEYPLKTLPLDFDLENLIALHLPYSEVEQIWKGQKEAFKLKFIDLHDSHNLTSIPEPLEAPNLERINLCNCTNLSY 669 (951)
Q Consensus 590 ~L~l~~~~l~~lp~~~~l~~L~~L~L~~~~i~~l~~~~~~l~~L~~L~L~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~ 669 (951)
.|+++++.++++|..+. .+|+.|++.+|+++.+|.. .++|++|++++|.+. .+|.. .++|+.|++++|. +..
T Consensus 205 ~LdLs~~~LtsLP~~l~-~~L~~L~L~~N~Lt~LP~l---p~~Lk~LdLs~N~Lt-sLP~l--p~sL~~L~Ls~N~-L~~ 276 (788)
T PRK15387 205 VLNVGESGLTTLPDCLP-AHITTLVIPDNNLTSLPAL---PPELRTLEVSGNQLT-SLPVL--PPGLLELSIFSNP-LTH 276 (788)
T ss_pred EEEcCCCCCCcCCcchh-cCCCEEEccCCcCCCCCCC---CCCCcEEEecCCccC-cccCc--ccccceeeccCCc-hhh
Confidence 34444444444444331 2444455555555444432 244555555554332 22321 2345555555543 223
Q ss_pred cCcccccCCcccEEeccCCCCCcccCCCCCCCCCceeeCcCCCCCCCCCccccceeeccccCCCCCccCcccccCCCCcE
Q 002220 670 IPLYVQNFHNLGSLSLKGCKSLRCFPRNIHFRSPIEIDCAWCVNLTEFPQISGKVVKLRLWYTPIEEVPSSIECLTNLET 749 (951)
Q Consensus 670 ~~~~~~~l~~L~~L~L~~~~~l~~l~~~~~l~~L~~L~l~~~~~l~~l~~~~~~L~~L~l~~~~l~~lp~~l~~l~~L~~ 749 (951)
+|.. ..+|+.|++++| .++.+|.. .++|+.|+++++ .+..+|..+.+|+.|++++|.++.+|.. ..+|+.
T Consensus 277 Lp~l---p~~L~~L~Ls~N-~Lt~LP~~--p~~L~~LdLS~N-~L~~Lp~lp~~L~~L~Ls~N~L~~LP~l---p~~Lq~ 346 (788)
T PRK15387 277 LPAL---PSGLCKLWIFGN-QLTSLPVL--PPGLQELSVSDN-QLASLPALPSELCKLWAYNNQLTSLPTL---PSGLQE 346 (788)
T ss_pred hhhc---hhhcCEEECcCC-cccccccc--ccccceeECCCC-ccccCCCCcccccccccccCcccccccc---ccccce
Confidence 3321 134555555553 23333321 233444444432 3334444444555555555665555531 134555
Q ss_pred EecccccccccccccccCCCCCCEEeccCCCCCCccchhcccCCCCcEEEcccCCCcccCccccCCCCCcEEeeccCCCC
Q 002220 750 LDLRLCERLKRVSTSICKLKSLGSLLLAFCSNLEGFPEILEKMELLETLDLERTGVKELPPSFENLQGLRQLSLIGCSEL 829 (951)
Q Consensus 750 L~Ls~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~n~i~~l~~~~~~l~~L~~L~l~~~~~~ 829 (951)
|+|++|.+. .+|.. ..+|+.|++++|.+..+|.. ..+|+.|++++|.+.
T Consensus 347 LdLS~N~Ls-------------------------~LP~l---p~~L~~L~Ls~N~L~~LP~l---~~~L~~LdLs~N~Lt 395 (788)
T PRK15387 347 LSVSDNQLA-------------------------SLPTL---PSELYKLWAYNNRLTSLPAL---PSGLKELIVSGNRLT 395 (788)
T ss_pred EecCCCccC-------------------------CCCCC---CcccceehhhccccccCccc---ccccceEEecCCccc
Confidence 555554332 22321 23455555555555555432 235666666666544
Q ss_pred ccCCcccCCcCCCCCCCCEEeccCCCCCCcCccCCCCCCCCEEEccCCCCcccchhhcCCCCCCEEeeCCCCCCCc
Q 002220 830 KCSGWVLPTRISKLSSLERLQLSGCEIKEIPEDIDCLSSLEVLDLSGSKIEILPTSIGQLSRLRQLNLLDCNMLQS 905 (951)
Q Consensus 830 ~~~~~~~~~~~~~l~~L~~L~L~~~~l~~l~~~l~~l~~L~~L~L~~n~l~~l~~~l~~l~~L~~L~L~~~~~l~~ 905 (951)
. +|.. .++|+.|++++|.++.+|.. +.+|+.|++++|+++.+|..+..+++|+.|+|++|+.-..
T Consensus 396 ~-----LP~l---~s~L~~LdLS~N~LssIP~l---~~~L~~L~Ls~NqLt~LP~sl~~L~~L~~LdLs~N~Ls~~ 460 (788)
T PRK15387 396 S-----LPVL---PSELKELMVSGNRLTSLPML---PSGLLSLSVYRNQLTRLPESLIHLSSETTVNLEGNPLSER 460 (788)
T ss_pred C-----CCCc---ccCCCEEEccCCcCCCCCcc---hhhhhhhhhccCcccccChHHhhccCCCeEECCCCCCCch
Confidence 3 2321 23566666666666666642 2356666677776666666666666777777766665443
No 18
>smart00255 TIR Toll - interleukin 1 - resistance.
Probab=99.78 E-value=9.1e-19 Score=165.67 Aligned_cols=136 Identities=41% Similarity=0.701 Sum_probs=113.3
Q ss_pred cccEEEcccc-cccccchHHHHHHHHHhCCCeEEecCcccCCCCCchHHHHHHhhccceEEEEecCCcccchhhHHHHHH
Q 002220 10 KFDVFLSFRG-EDTRDNFTSHLYAALCRKKIKTFIDDEELRRGDDISPALLNAIQGSKISVIIFSKDYASSKWCLDELVK 88 (951)
Q Consensus 10 ~~dvfis~~~-~d~~~~~~~~l~~~L~~~g~~~~~d~~~~~~g~~~~~~~~~~i~~s~~~i~v~s~~~~~s~wc~~el~~ 88 (951)
+|||||||++ +|....|+.+|...|...|+.+|.|++. +|.....+|.++|++|+++|+|+|++|+.|.||..|+..
T Consensus 1 ~~dvFISys~~~~~~~~~v~~L~~~l~~~~~~v~~d~~~--~~~~~~~~i~~~i~~s~~~i~vlS~~~~~S~w~~~E~~~ 78 (140)
T smart00255 1 EYDVFISYSGKEDVRNEFLSHLLEKLRGYGLCVFIDDFE--PGGGDLEEIDEAIEKSRIAIVVLSPNYAESEWCLDELVA 78 (140)
T ss_pred CCeEEEECCCCHHHHHHHHHHHHHHhhcCCcEEEecCcc--cccchHHHHHHHHHHCcEEEEEECcccccChhHHHHHHH
Confidence 5999999999 4556889999999999999999999753 343344499999999999999999999999999999999
Q ss_pred HHHhhhc-CCCeEEEEEeecCCcccccccccHHHHHHHHHHHhCCChHHHHHHHHHHHhhc
Q 002220 89 ILDCKNL-NGQMVVPVFYQVDPSDVRKQTGCFRDAFVKHQKQFKDMPEKAQNWKAALTQAS 148 (951)
Q Consensus 89 ~~~~~~~-~~~~~~pv~~~~~p~~vr~~~~~~~~~~~~~~~~~~~~~~~~~~w~~al~~~~ 148 (951)
++.+... ...+||||+++..|..+..+.+.+..++.....++.....+ ..|++++..++
T Consensus 79 a~~~~~~~~~~~iIPI~~~~~~~~~~~~~~~l~~~~~~~~~~w~~~~~~-~fW~~~~~~l~ 138 (140)
T smart00255 79 ALENALEEGGLRVIPIFYEVIPSDVRKQPGKFRKVLKKNYLKWPEDEKE-RFWKKALYAVP 138 (140)
T ss_pred HHHHHHHcCCCeEEEEEEecChHHHHhcccHHHHHHHHHHhhcCCchhH-HHHHHHHHHhc
Confidence 9987744 66799999999999889999999999888774444443333 68988877654
No 19
>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional
Probab=99.77 E-value=2.7e-18 Score=199.39 Aligned_cols=236 Identities=18% Similarity=0.178 Sum_probs=127.6
Q ss_pred cceEEEeecCCCCCCCCccccccceecccCCccccccccccccccccceeccCCCCCCCcCCCCCCCCCCcEEecCCCCC
Q 002220 587 ELRYLYWHEYPLKTLPLDFDLENLIALHLPYSEVEQIWKGQKEAFKLKFIDLHDSHNLTSIPEPLEAPNLERINLCNCTN 666 (951)
Q Consensus 587 ~L~~L~l~~~~l~~lp~~~~l~~L~~L~L~~~~i~~l~~~~~~l~~L~~L~L~~~~~~~~~~~~~~l~~L~~L~L~~~~~ 666 (951)
+|+.|++.+|.++.+|.. +++|++|+|++|+|+.+|.. .++|+.|++++|.+. .+|.+ ..+|+.|++++|.
T Consensus 223 ~L~~L~L~~N~Lt~LP~l--p~~Lk~LdLs~N~LtsLP~l---p~sL~~L~Ls~N~L~-~Lp~l--p~~L~~L~Ls~N~- 293 (788)
T PRK15387 223 HITTLVIPDNNLTSLPAL--PPELRTLEVSGNQLTSLPVL---PPGLLELSIFSNPLT-HLPAL--PSGLCKLWIFGNQ- 293 (788)
T ss_pred CCCEEEccCCcCCCCCCC--CCCCcEEEecCCccCcccCc---ccccceeeccCCchh-hhhhc--hhhcCEEECcCCc-
Confidence 344444444444444431 34444444444444444321 134444444444321 22221 1334444444432
Q ss_pred CCccCcccccCCcccEEeccCCCCCcccCCCCCCCCCceeeCcCCCCCCCCCccccceeeccccCCCCCccCcccccCCC
Q 002220 667 LSYIPLYVQNFHNLGSLSLKGCKSLRCFPRNIHFRSPIEIDCAWCVNLTEFPQISGKVVKLRLWYTPIEEVPSSIECLTN 746 (951)
Q Consensus 667 ~~~~~~~~~~l~~L~~L~L~~~~~l~~l~~~~~l~~L~~L~l~~~~~l~~l~~~~~~L~~L~l~~~~l~~lp~~l~~l~~ 746 (951)
+..+|. .+++|++|++++| .+..+|.. ..+|+.|.+++| .+..+|..+.+|+.|++++|.++.+|.. ..+
T Consensus 294 Lt~LP~---~p~~L~~LdLS~N-~L~~Lp~l--p~~L~~L~Ls~N-~L~~LP~lp~~Lq~LdLS~N~Ls~LP~l---p~~ 363 (788)
T PRK15387 294 LTSLPV---LPPGLQELSVSDN-QLASLPAL--PSELCKLWAYNN-QLTSLPTLPSGLQELSVSDNQLASLPTL---PSE 363 (788)
T ss_pred cccccc---cccccceeECCCC-ccccCCCC--cccccccccccC-ccccccccccccceEecCCCccCCCCCC---Ccc
Confidence 223332 1234555555553 33334331 123445555542 3555666667889999999999988863 346
Q ss_pred CcEEecccccccccccccccCCCCCCEEeccCCCCCCccchhcccCCCCcEEEcccCCCcccCccccCCCCCcEEeeccC
Q 002220 747 LETLDLRLCERLKRVSTSICKLKSLGSLLLAFCSNLEGFPEILEKMELLETLDLERTGVKELPPSFENLQGLRQLSLIGC 826 (951)
Q Consensus 747 L~~L~Ls~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~n~i~~l~~~~~~l~~L~~L~l~~~ 826 (951)
|+.|++++|.+. .+|.. +.+|+.|++++|.++.+|.. .++|+.|++++|
T Consensus 364 L~~L~Ls~N~L~-~LP~l---------------------------~~~L~~LdLs~N~Lt~LP~l---~s~L~~LdLS~N 412 (788)
T PRK15387 364 LYKLWAYNNRLT-SLPAL---------------------------PSGLKELIVSGNRLTSLPVL---PSELKELMVSGN 412 (788)
T ss_pred cceehhhccccc-cCccc---------------------------ccccceEEecCCcccCCCCc---ccCCCEEEccCC
Confidence 777777766543 23321 12455666666666655542 246677777777
Q ss_pred CCCccCCcccCCcCCCCCCCCEEeccCCCCCCcCccCCCCCCCCEEEccCCCCc
Q 002220 827 SELKCSGWVLPTRISKLSSLERLQLSGCEIKEIPEDIDCLSSLEVLDLSGSKIE 880 (951)
Q Consensus 827 ~~~~~~~~~~~~~~~~l~~L~~L~L~~~~l~~l~~~l~~l~~L~~L~L~~n~l~ 880 (951)
.... +|.. ..+|+.|++++|.++.+|..+..+++|+.|+|++|.++
T Consensus 413 ~Lss-----IP~l---~~~L~~L~Ls~NqLt~LP~sl~~L~~L~~LdLs~N~Ls 458 (788)
T PRK15387 413 RLTS-----LPML---PSGLLSLSVYRNQLTRLPESLIHLSSETTVNLEGNPLS 458 (788)
T ss_pred cCCC-----CCcc---hhhhhhhhhccCcccccChHHhhccCCCeEECCCCCCC
Confidence 6554 3332 23567788888888888887878888888888888777
No 20
>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional
Probab=99.72 E-value=1.9e-17 Score=194.04 Aligned_cols=244 Identities=18% Similarity=0.257 Sum_probs=108.4
Q ss_pred ceEEEeecCCCCCCCCccccccceecccCCccccccccccccccccceeccCCCCCCCcCCCCCCCCCCcEEecCCCCCC
Q 002220 588 LRYLYWHEYPLKTLPLDFDLENLIALHLPYSEVEQIWKGQKEAFKLKFIDLHDSHNLTSIPEPLEAPNLERINLCNCTNL 667 (951)
Q Consensus 588 L~~L~l~~~~l~~lp~~~~l~~L~~L~L~~~~i~~l~~~~~~l~~L~~L~L~~~~~~~~~~~~~~l~~L~~L~L~~~~~~ 667 (951)
...|+++++.++.+|..+ +++|+.|+|++|+++.+|..+. .+|++|++++|.+. .+|... .++|+.|+|++|..
T Consensus 180 ~~~L~L~~~~LtsLP~~I-p~~L~~L~Ls~N~LtsLP~~l~--~nL~~L~Ls~N~Lt-sLP~~l-~~~L~~L~Ls~N~L- 253 (754)
T PRK15370 180 KTELRLKILGLTTIPACI-PEQITTLILDNNELKSLPENLQ--GNIKTLYANSNQLT-SIPATL-PDTIQEMELSINRI- 253 (754)
T ss_pred ceEEEeCCCCcCcCCccc-ccCCcEEEecCCCCCcCChhhc--cCCCEEECCCCccc-cCChhh-hccccEEECcCCcc-
Confidence 344555555555555432 2345555555555555554432 35555555555432 223211 12455555555432
Q ss_pred CccCcccccCCcccEEeccCCCCCcccCCCCCCCCCceeeCcCCCCCCCCCccccceeeccccCCCCCccCcccccCCCC
Q 002220 668 SYIPLYVQNFHNLGSLSLKGCKSLRCFPRNIHFRSPIEIDCAWCVNLTEFPQISGKVVKLRLWYTPIEEVPSSIECLTNL 747 (951)
Q Consensus 668 ~~~~~~~~~l~~L~~L~L~~~~~l~~l~~~~~l~~L~~L~l~~~~~l~~l~~~~~~L~~L~l~~~~l~~lp~~l~~l~~L 747 (951)
..+|..+. .+|+.|++++| .+..+|..+ +.+|+.|++++|.++.+|..+. ++|
T Consensus 254 ~~LP~~l~--s~L~~L~Ls~N-~L~~LP~~l----------------------~~sL~~L~Ls~N~Lt~LP~~lp--~sL 306 (754)
T PRK15370 254 TELPERLP--SALQSLDLFHN-KISCLPENL----------------------PEELRYLSVYDNSIRTLPAHLP--SGI 306 (754)
T ss_pred CcCChhHh--CCCCEEECcCC-ccCcccccc----------------------CCCCcEEECCCCccccCcccch--hhH
Confidence 24444332 34555555542 233333211 1234444455555555554332 356
Q ss_pred cEEecccccccccccccccCCCCCCEEeccCCCCCCccchhcccCCCCcEEEcccCCCcccCccccCCCCCcEEeeccCC
Q 002220 748 ETLDLRLCERLKRVSTSICKLKSLGSLLLAFCSNLEGFPEILEKMELLETLDLERTGVKELPPSFENLQGLRQLSLIGCS 827 (951)
Q Consensus 748 ~~L~Ls~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~n~i~~l~~~~~~l~~L~~L~l~~~~ 827 (951)
+.|++++|.+.. +|..+ .++|+.|++++|.. +.+|..+ .++|+.|++++|.++.+|..+ .++|+.|+|++|.
T Consensus 307 ~~L~Ls~N~Lt~-LP~~l--~~sL~~L~Ls~N~L-t~LP~~l--~~sL~~L~Ls~N~L~~LP~~l--p~~L~~LdLs~N~ 378 (754)
T PRK15370 307 THLNVQSNSLTA-LPETL--PPGLKTLEAGENAL-TSLPASL--PPELQVLDVSKNQITVLPETL--PPTITTLDVSRNA 378 (754)
T ss_pred HHHHhcCCcccc-CCccc--cccceeccccCCcc-ccCChhh--cCcccEEECCCCCCCcCChhh--cCCcCEEECCCCc
Confidence 666666665432 33222 13455555555542 2233322 234555555555555444433 1345555555544
Q ss_pred CCccCCcccCCcCCCCCCCCEEeccCCCCCCcCccC----CCCCCCCEEEccCCCC
Q 002220 828 ELKCSGWVLPTRISKLSSLERLQLSGCEIKEIPEDI----DCLSSLEVLDLSGSKI 879 (951)
Q Consensus 828 ~~~~~~~~~~~~~~~l~~L~~L~L~~~~l~~l~~~l----~~l~~L~~L~L~~n~l 879 (951)
... +|..+. .+|+.|++++|++..+|..+ ..++++..|++.+|.+
T Consensus 379 Lt~-----LP~~l~--~sL~~LdLs~N~L~~LP~sl~~~~~~~~~l~~L~L~~Npl 427 (754)
T PRK15370 379 LTN-----LPENLP--AALQIMQASRNNLVRLPESLPHFRGEGPQPTRIIVEYNPF 427 (754)
T ss_pred CCC-----CCHhHH--HHHHHHhhccCCcccCchhHHHHhhcCCCccEEEeeCCCc
Confidence 433 222221 13444445555444443322 2224444444444444
No 21
>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional
Probab=99.69 E-value=5.1e-17 Score=190.41 Aligned_cols=250 Identities=20% Similarity=0.289 Sum_probs=173.6
Q ss_pred CccEEEEcCCCCCCCCccCcceecCcccccCCCcceEEEeecCCCCCCCCccccccceecccCCcccccccccccccccc
Q 002220 554 NLRLLKFYMPEHRGLPIMSSNVRLDEDLECLPEELRYLYWHEYPLKTLPLDFDLENLIALHLPYSEVEQIWKGQKEAFKL 633 (951)
Q Consensus 554 ~Lr~L~l~~~~~~~l~~~~~~~~~~~~~~~l~~~L~~L~l~~~~l~~lp~~~~l~~L~~L~L~~~~i~~l~~~~~~l~~L 633 (951)
+...|.++++.+..+|. .+|++|+.|++++|.++.+|..+. .+|+.|++++|.++.+|..+. .+|
T Consensus 179 ~~~~L~L~~~~LtsLP~------------~Ip~~L~~L~Ls~N~LtsLP~~l~-~nL~~L~Ls~N~LtsLP~~l~--~~L 243 (754)
T PRK15370 179 NKTELRLKILGLTTIPA------------CIPEQITTLILDNNELKSLPENLQ-GNIKTLYANSNQLTSIPATLP--DTI 243 (754)
T ss_pred CceEEEeCCCCcCcCCc------------ccccCCcEEEecCCCCCcCChhhc-cCCCEEECCCCccccCChhhh--ccc
Confidence 44667777665443332 245689999999999999997654 689999999999999987654 479
Q ss_pred ceeccCCCCCCCcCCCCCCCCCCcEEecCCCCCCCccCcccccCCcccEEeccCCCCCcccCCCCCCCCCceeeCcCCCC
Q 002220 634 KFIDLHDSHNLTSIPEPLEAPNLERINLCNCTNLSYIPLYVQNFHNLGSLSLKGCKSLRCFPRNIHFRSPIEIDCAWCVN 713 (951)
Q Consensus 634 ~~L~L~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~L~~~~~l~~l~~~~~l~~L~~L~l~~~~~ 713 (951)
+.|+|++|.+. .+|... ..+|+.|++++|. +..+|..+. .+|++|++++| .++.+|..+
T Consensus 244 ~~L~Ls~N~L~-~LP~~l-~s~L~~L~Ls~N~-L~~LP~~l~--~sL~~L~Ls~N-~Lt~LP~~l--------------- 302 (754)
T PRK15370 244 QEMELSINRIT-ELPERL-PSALQSLDLFHNK-ISCLPENLP--EELRYLSVYDN-SIRTLPAHL--------------- 302 (754)
T ss_pred cEEECcCCccC-cCChhH-hCCCCEEECcCCc-cCccccccC--CCCcEEECCCC-ccccCcccc---------------
Confidence 99999999765 445322 2579999999764 456777554 58999999986 444444321
Q ss_pred CCCCCccccceeeccccCCCCCccCcccccCCCCcEEecccccccccccccccCCCCCCEEeccCCCCCCccchhcccCC
Q 002220 714 LTEFPQISGKVVKLRLWYTPIEEVPSSIECLTNLETLDLRLCERLKRVSTSICKLKSLGSLLLAFCSNLEGFPEILEKME 793 (951)
Q Consensus 714 l~~l~~~~~~L~~L~l~~~~l~~lp~~l~~l~~L~~L~Ls~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~ 793 (951)
+.+|+.|++++|.+..+|..+. ++|+.|++++|.+.. +|..+. ++|+.|++++|.. ..+|..+ .+
T Consensus 303 -------p~sL~~L~Ls~N~Lt~LP~~l~--~sL~~L~Ls~N~Lt~-LP~~l~--~sL~~L~Ls~N~L-~~LP~~l--p~ 367 (754)
T PRK15370 303 -------PSGITHLNVQSNSLTALPETLP--PGLKTLEAGENALTS-LPASLP--PELQVLDVSKNQI-TVLPETL--PP 367 (754)
T ss_pred -------hhhHHHHHhcCCccccCCcccc--ccceeccccCCcccc-CChhhc--CcccEEECCCCCC-CcCChhh--cC
Confidence 1246667777777777765443 577777877776543 555443 5788888888764 3456544 36
Q ss_pred CCcEEEcccCCCcccCccccCCCCCcEEeeccCCCCccCCcccCCcCCCCCCCCEEeccCCCCC
Q 002220 794 LLETLDLERTGVKELPPSFENLQGLRQLSLIGCSELKCSGWVLPTRISKLSSLERLQLSGCEIK 857 (951)
Q Consensus 794 ~L~~L~l~~n~i~~l~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~l~ 857 (951)
+|+.|++++|.++.+|..+. .+|+.|++++|....... .+|.....++++..|++.+|++.
T Consensus 368 ~L~~LdLs~N~Lt~LP~~l~--~sL~~LdLs~N~L~~LP~-sl~~~~~~~~~l~~L~L~~Npls 428 (754)
T PRK15370 368 TITTLDVSRNALTNLPENLP--AALQIMQASRNNLVRLPE-SLPHFRGEGPQPTRIIVEYNPFS 428 (754)
T ss_pred CcCEEECCCCcCCCCCHhHH--HHHHHHhhccCCcccCch-hHHHHhhcCCCccEEEeeCCCcc
Confidence 78888888888888877553 368888888887765322 23344455678888899888876
No 22
>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]
Probab=99.66 E-value=4.7e-18 Score=172.72 Aligned_cols=317 Identities=19% Similarity=0.189 Sum_probs=214.3
Q ss_pred ccccCCCcceEEEeecCCCCCCCCcc--ccccceecccCCcccccc-ccccccccccceeccCCCCCCCcCC-C-CCCCC
Q 002220 580 DLECLPEELRYLYWHEYPLKTLPLDF--DLENLIALHLPYSEVEQI-WKGQKEAFKLKFIDLHDSHNLTSIP-E-PLEAP 654 (951)
Q Consensus 580 ~~~~l~~~L~~L~l~~~~l~~lp~~~--~l~~L~~L~L~~~~i~~l-~~~~~~l~~L~~L~L~~~~~~~~~~-~-~~~l~ 654 (951)
-...+|++-..++|+.|.|++||+.. .+++|+.|+|++|.|+.+ |..|++++.|..|-+.++..++.+| + +.++.
T Consensus 61 VP~~LP~~tveirLdqN~I~~iP~~aF~~l~~LRrLdLS~N~Is~I~p~AF~GL~~l~~Lvlyg~NkI~~l~k~~F~gL~ 140 (498)
T KOG4237|consen 61 VPANLPPETVEIRLDQNQISSIPPGAFKTLHRLRRLDLSKNNISFIAPDAFKGLASLLSLVLYGNNKITDLPKGAFGGLS 140 (498)
T ss_pred CcccCCCcceEEEeccCCcccCChhhccchhhhceecccccchhhcChHhhhhhHhhhHHHhhcCCchhhhhhhHhhhHH
Confidence 34567788889999999999998764 789999999999999977 4568889888888877754555555 3 34788
Q ss_pred CCcEEecCCCCCCCccCcccccCCcccEEeccCCCCCcccCCCC--CCCCCceeeCcCCCCC------------CCCCcc
Q 002220 655 NLERINLCNCTNLSYIPLYVQNFHNLGSLSLKGCKSLRCFPRNI--HFRSPIEIDCAWCVNL------------TEFPQI 720 (951)
Q Consensus 655 ~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~L~~~~~l~~l~~~~--~l~~L~~L~l~~~~~l------------~~l~~~ 720 (951)
.|+.|.+.-|...-.....+..+++|..|.+.+ +.+..++... .+..++++.+...+.+ ...|..
T Consensus 141 slqrLllNan~i~Cir~~al~dL~~l~lLslyD-n~~q~i~~~tf~~l~~i~tlhlA~np~icdCnL~wla~~~a~~~ie 219 (498)
T KOG4237|consen 141 SLQRLLLNANHINCIRQDALRDLPSLSLLSLYD-NKIQSICKGTFQGLAAIKTLHLAQNPFICDCNLPWLADDLAMNPIE 219 (498)
T ss_pred HHHHHhcChhhhcchhHHHHHHhhhcchhcccc-hhhhhhccccccchhccchHhhhcCccccccccchhhhHHhhchhh
Confidence 888888877766666666788888888888877 4555555532 5566666655443311 111111
Q ss_pred cc-------------------------ceeec--cccC--CCCCccCc-ccccCCCCcEEecccccccccccccccCCCC
Q 002220 721 SG-------------------------KVVKL--RLWY--TPIEEVPS-SIECLTNLETLDLRLCERLKRVSTSICKLKS 770 (951)
Q Consensus 721 ~~-------------------------~L~~L--~l~~--~~l~~lp~-~l~~l~~L~~L~Ls~~~~~~~~~~~~~~l~~ 770 (951)
++ .++.+ .+.. +.....|. .|..+++|++|+|++|.+...-+.+|..+..
T Consensus 220 tsgarc~~p~rl~~~Ri~q~~a~kf~c~~esl~s~~~~~d~~d~~cP~~cf~~L~~L~~lnlsnN~i~~i~~~aFe~~a~ 299 (498)
T KOG4237|consen 220 TSGARCVSPYRLYYKRINQEDARKFLCSLESLPSRLSSEDFPDSICPAKCFKKLPNLRKLNLSNNKITRIEDGAFEGAAE 299 (498)
T ss_pred cccceecchHHHHHHHhcccchhhhhhhHHhHHHhhccccCcCCcChHHHHhhcccceEeccCCCccchhhhhhhcchhh
Confidence 10 11111 1111 11122232 3778999999999999999888899999999
Q ss_pred CCEEeccCCCCCCccchhcccCCCCcEEEcccCCCccc-CccccCCCCCcEEeeccCCCCccC------Cc-------cc
Q 002220 771 LGSLLLAFCSNLEGFPEILEKMELLETLDLERTGVKEL-PPSFENLQGLRQLSLIGCSELKCS------GW-------VL 836 (951)
Q Consensus 771 L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~n~i~~l-~~~~~~l~~L~~L~l~~~~~~~~~------~~-------~~ 836 (951)
+++|+|..|+....-...|.++..|+.|+|.+|+|+.+ |..|..+.+|.+|.+-.|+..-.. +| ..
T Consensus 300 l~eL~L~~N~l~~v~~~~f~~ls~L~tL~L~~N~it~~~~~aF~~~~~l~~l~l~~Np~~CnC~l~wl~~Wlr~~~~~~~ 379 (498)
T KOG4237|consen 300 LQELYLTRNKLEFVSSGMFQGLSGLKTLSLYDNQITTVAPGAFQTLFSLSTLNLLSNPFNCNCRLAWLGEWLRKKSVVGN 379 (498)
T ss_pred hhhhhcCcchHHHHHHHhhhccccceeeeecCCeeEEEecccccccceeeeeehccCcccCccchHHHHHHHhhCCCCCC
Confidence 99999999986655567789999999999999999966 557888889999988776533211 01 01
Q ss_pred CCcCCCCCCCCEEeccCCCCCC-------------------------------------cCccCCCCCCCCEEEccCCCC
Q 002220 837 PTRISKLSSLERLQLSGCEIKE-------------------------------------IPEDIDCLSSLEVLDLSGSKI 879 (951)
Q Consensus 837 ~~~~~~l~~L~~L~L~~~~l~~-------------------------------------l~~~l~~l~~L~~L~L~~n~l 879 (951)
|. ......++.+.++...+.+ +|..+ ...-.+|++.+|.+
T Consensus 380 ~~-Cq~p~~~~~~~~~dv~~~~~~c~~~ee~~~~~s~~cP~~c~c~~tVvRcSnk~lk~lp~~i--P~d~telyl~gn~~ 456 (498)
T KOG4237|consen 380 PR-CQSPGFVRQIPISDVAFGDFRCGGPEELGCLTSSPCPPPCTCLDTVVRCSNKLLKLLPRGI--PVDVTELYLDGNAI 456 (498)
T ss_pred CC-CCCCchhccccchhccccccccCCccccCCCCCCCCCCCcchhhhhHhhcccchhhcCCCC--CchhHHHhcccchh
Confidence 11 1222245555555443221 22111 22457889999999
Q ss_pred cccchhhcCCCCCCEEeeCCCCCC
Q 002220 880 EILPTSIGQLSRLRQLNLLDCNML 903 (951)
Q Consensus 880 ~~l~~~l~~l~~L~~L~L~~~~~l 903 (951)
+.+|.. .+.+| .+++++|+..
T Consensus 457 ~~vp~~--~~~~l-~~dls~n~i~ 477 (498)
T KOG4237|consen 457 TSVPDE--LLRSL-LLDLSNNRIS 477 (498)
T ss_pred cccCHH--HHhhh-hcccccCcee
Confidence 999965 66778 8899886653
No 23
>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]
Probab=99.61 E-value=1e-17 Score=150.50 Aligned_cols=177 Identities=27% Similarity=0.422 Sum_probs=126.3
Q ss_pred ceeeccccCCCCCccCcccccCCCCcEEecccccccccccccccCCCCCCEEeccCCCCCCccchhcccCCCCcEEEccc
Q 002220 723 KVVKLRLWYTPIEEVPSSIECLTNLETLDLRLCERLKRVSTSICKLKSLGSLLLAFCSNLEGFPEILEKMELLETLDLER 802 (951)
Q Consensus 723 ~L~~L~l~~~~l~~lp~~l~~l~~L~~L~Ls~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~ 802 (951)
+++.|.|++|.+..+|+.+..+.+|+.|++++|+ .+.+|.++++++.|+.|+++-|. +..+|..|+.++.|+.|++.+
T Consensus 34 ~ITrLtLSHNKl~~vppnia~l~nlevln~~nnq-ie~lp~~issl~klr~lnvgmnr-l~~lprgfgs~p~levldlty 111 (264)
T KOG0617|consen 34 NITRLTLSHNKLTVVPPNIAELKNLEVLNLSNNQ-IEELPTSISSLPKLRILNVGMNR-LNILPRGFGSFPALEVLDLTY 111 (264)
T ss_pred hhhhhhcccCceeecCCcHHHhhhhhhhhcccch-hhhcChhhhhchhhhheecchhh-hhcCccccCCCchhhhhhccc
Confidence 5667778888888888888888888888888664 45677777788888888777665 455677777777777777777
Q ss_pred CCCc--ccCccccCCCCCcEEeeccCCCCccCCcccCCcCCCCCCCCEEeccCCCCCCcCccCCCCCCCCEEEccCCCCc
Q 002220 803 TGVK--ELPPSFENLQGLRQLSLIGCSELKCSGWVLPTRISKLSSLERLQLSGCEIKEIPEDIDCLSSLEVLDLSGSKIE 880 (951)
Q Consensus 803 n~i~--~l~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~l~~l~~~l~~l~~L~~L~L~~n~l~ 880 (951)
|++. .+|..|..++.|+.|++++|...- +|...+.+.+|+.|.+..|.+.++|..++.+..|++|.+.+|+++
T Consensus 112 nnl~e~~lpgnff~m~tlralyl~dndfe~-----lp~dvg~lt~lqil~lrdndll~lpkeig~lt~lrelhiqgnrl~ 186 (264)
T KOG0617|consen 112 NNLNENSLPGNFFYMTTLRALYLGDNDFEI-----LPPDVGKLTNLQILSLRDNDLLSLPKEIGDLTRLRELHIQGNRLT 186 (264)
T ss_pred cccccccCCcchhHHHHHHHHHhcCCCccc-----CChhhhhhcceeEEeeccCchhhCcHHHHHHHHHHHHhcccceee
Confidence 7776 567777777777777777766543 666677777777777777777777777777777777777777777
Q ss_pred ccchhhcCCC---CCCEEeeCCCCCCCcC
Q 002220 881 ILPTSIGQLS---RLRQLNLLDCNMLQSI 906 (951)
Q Consensus 881 ~l~~~l~~l~---~L~~L~L~~~~~l~~l 906 (951)
.+|+.++++. +=+.+.+.+|+....+
T Consensus 187 vlppel~~l~l~~~k~v~r~E~NPwv~pI 215 (264)
T KOG0617|consen 187 VLPPELANLDLVGNKQVMRMEENPWVNPI 215 (264)
T ss_pred ecChhhhhhhhhhhHHHHhhhhCCCCChH
Confidence 7776655543 2233445555554433
No 24
>PF13676 TIR_2: TIR domain; PDB: 3H16_B 3UB4_A 2Y92_A 3UB3_A 3UB2_A.
Probab=99.54 E-value=2.6e-15 Score=132.88 Aligned_cols=88 Identities=30% Similarity=0.546 Sum_probs=76.2
Q ss_pred EEEcccccccccchHHHHHHHHHhCCCeEEecCcccCCCCCchHHHHHHhhccceEEEEecCCcccchhhHHHHHHHHHh
Q 002220 13 VFLSFRGEDTRDNFTSHLYAALCRKKIKTFIDDEELRRGDDISPALLNAIQGSKISVIIFSKDYASSKWCLDELVKILDC 92 (951)
Q Consensus 13 vfis~~~~d~~~~~~~~l~~~L~~~g~~~~~d~~~~~~g~~~~~~~~~~i~~s~~~i~v~s~~~~~s~wc~~el~~~~~~ 92 (951)
|||||+++| +.|+.+|++.|++.|+++|+|. ++.+|+.+.+.|.++|++|+..|+++|++|..|.||..|+..+.
T Consensus 1 VFIS~~~~D--~~~a~~l~~~L~~~g~~v~~d~-~~~~g~~~~~~i~~~i~~s~~~i~~~S~~~~~s~~~~~E~~~a~-- 75 (102)
T PF13676_consen 1 VFISYSSED--REFAERLAERLESAGIRVFLDR-DIPPGEDWREEIERAIERSDCVIVLLSPNYLKSPWCRFELGAAW-- 75 (102)
T ss_dssp EEEEEEGGG--CCCHHHHHHHHHHTT--EE-GG-EE-TTS-HHCCCHHCCTTEEEEEEEEEHHHHCTHHHHHHHHHHH--
T ss_pred eEEEecCCc--HHHHHHHHHHHhhcCCEEEEEE-eCCCCCCHHHHHHHHHHhCCEEEEEECcccccChHHHHHHHHHH--
Confidence 899999999 6799999999999999999997 89999999999999999999999999999999999999998884
Q ss_pred hhcCCCeEEEEEeec
Q 002220 93 KNLNGQMVVPVFYQV 107 (951)
Q Consensus 93 ~~~~~~~~~pv~~~~ 107 (951)
+.++.|+||..+.
T Consensus 76 --~~~~~iipv~~~~ 88 (102)
T PF13676_consen 76 --KRGKPIIPVRLDP 88 (102)
T ss_dssp --CTSESEEEEECSG
T ss_pred --HCCCEEEEEEECC
Confidence 2445799999663
No 25
>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]
Probab=99.54 E-value=3e-16 Score=159.76 Aligned_cols=145 Identities=17% Similarity=0.258 Sum_probs=103.0
Q ss_pred EEeecCCCCCCCCccccccceecccCCccccccccc-cccccccceeccCCCCCCCcCCCCC-CCCCCcEEecCCCCCCC
Q 002220 591 LYWHEYPLKTLPLDFDLENLIALHLPYSEVEQIWKG-QKEAFKLKFIDLHDSHNLTSIPEPL-EAPNLERINLCNCTNLS 668 (951)
Q Consensus 591 L~l~~~~l~~lp~~~~l~~L~~L~L~~~~i~~l~~~-~~~l~~L~~L~L~~~~~~~~~~~~~-~l~~L~~L~L~~~~~~~ 668 (951)
.+.++-.++.+|... +..-+.++|..|.|+.+|.+ |+.+++|+.|||++|.+...-|+.+ +++.|..|-+-+++.++
T Consensus 51 VdCr~~GL~eVP~~L-P~~tveirLdqN~I~~iP~~aF~~l~~LRrLdLS~N~Is~I~p~AF~GL~~l~~Lvlyg~NkI~ 129 (498)
T KOG4237|consen 51 VDCRGKGLTEVPANL-PPETVEIRLDQNQISSIPPGAFKTLHRLRRLDLSKNNISFIAPDAFKGLASLLSLVLYGNNKIT 129 (498)
T ss_pred EEccCCCcccCcccC-CCcceEEEeccCCcccCChhhccchhhhceecccccchhhcChHhhhhhHhhhHHHhhcCCchh
Confidence 344555677777654 45678899999999999976 8999999999999998877777544 88888888777766777
Q ss_pred ccCc-ccccCCcccEEeccCCCCCcccCCCCCCCCCceeeCcCCCCCCCCCccccceeeccccCCCCCccCc-ccccCCC
Q 002220 669 YIPL-YVQNFHNLGSLSLKGCKSLRCFPRNIHFRSPIEIDCAWCVNLTEFPQISGKVVKLRLWYTPIEEVPS-SIECLTN 746 (951)
Q Consensus 669 ~~~~-~~~~l~~L~~L~L~~~~~l~~l~~~~~l~~L~~L~l~~~~~l~~l~~~~~~L~~L~l~~~~l~~lp~-~l~~l~~ 746 (951)
.+|. .|+.+..|+.|.+.-|. +..++... -....++..|.+..|.++.++. ++..+..
T Consensus 130 ~l~k~~F~gL~slqrLllNan~-i~Cir~~a-------------------l~dL~~l~lLslyDn~~q~i~~~tf~~l~~ 189 (498)
T KOG4237|consen 130 DLPKGAFGGLSSLQRLLLNANH-INCIRQDA-------------------LRDLPSLSLLSLYDNKIQSICKGTFQGLAA 189 (498)
T ss_pred hhhhhHhhhHHHHHHHhcChhh-hcchhHHH-------------------HHHhhhcchhcccchhhhhhccccccchhc
Confidence 7775 67888888888776532 22221111 0112244556667788888876 6788888
Q ss_pred CcEEeccccc
Q 002220 747 LETLDLRLCE 756 (951)
Q Consensus 747 L~~L~Ls~~~ 756 (951)
++.+.+..|.
T Consensus 190 i~tlhlA~np 199 (498)
T KOG4237|consen 190 IKTLHLAQNP 199 (498)
T ss_pred cchHhhhcCc
Confidence 8888887765
No 26
>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]
Probab=99.54 E-value=1.5e-16 Score=143.09 Aligned_cols=172 Identities=26% Similarity=0.391 Sum_probs=147.7
Q ss_pred cccCCCCcEEecccccccccccccccCCCCCCEEeccCCCCCCccchhcccCCCCcEEEcccCCCcccCccccCCCCCcE
Q 002220 741 IECLTNLETLDLRLCERLKRVSTSICKLKSLGSLLLAFCSNLEGFPEILEKMELLETLDLERTGVKELPPSFENLQGLRQ 820 (951)
Q Consensus 741 l~~l~~L~~L~Ls~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~n~i~~l~~~~~~l~~L~~ 820 (951)
+..+.+.+.|.||+|++ ..+|..+..+.+|+.|++++|+ ++.+|..++.+++|+.|+++-|.+..+|..|+.+|.|+.
T Consensus 29 Lf~~s~ITrLtLSHNKl-~~vppnia~l~nlevln~~nnq-ie~lp~~issl~klr~lnvgmnrl~~lprgfgs~p~lev 106 (264)
T KOG0617|consen 29 LFNMSNITRLTLSHNKL-TVVPPNIAELKNLEVLNLSNNQ-IEELPTSISSLPKLRILNVGMNRLNILPRGFGSFPALEV 106 (264)
T ss_pred ccchhhhhhhhcccCce-eecCCcHHHhhhhhhhhcccch-hhhcChhhhhchhhhheecchhhhhcCccccCCCchhhh
Confidence 55678889999999875 4556679999999999999886 577888899999999999999999999999999999999
Q ss_pred EeeccCCCCccCCcccCCcCCCCCCCCEEeccCCCCCCcCccCCCCCCCCEEEccCCCCcccchhhcCCCCCCEEeeCCC
Q 002220 821 LSLIGCSELKCSGWVLPTRISKLSSLERLQLSGCEIKEIPEDIDCLSSLEVLDLSGSKIEILPTSIGQLSRLRQLNLLDC 900 (951)
Q Consensus 821 L~l~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~l~~l~~~l~~l~~L~~L~L~~n~l~~l~~~l~~l~~L~~L~L~~~ 900 (951)
|++.+|...+. .+|..|-.+..|+-|.|++|.+.-+|..++.+++|+.|.+.+|.+-++|..++.+..|++|++.+|
T Consensus 107 ldltynnl~e~---~lpgnff~m~tlralyl~dndfe~lp~dvg~lt~lqil~lrdndll~lpkeig~lt~lrelhiqgn 183 (264)
T KOG0617|consen 107 LDLTYNNLNEN---SLPGNFFYMTTLRALYLGDNDFEILPPDVGKLTNLQILSLRDNDLLSLPKEIGDLTRLRELHIQGN 183 (264)
T ss_pred hhccccccccc---cCCcchhHHHHHHHHHhcCCCcccCChhhhhhcceeEEeeccCchhhCcHHHHHHHHHHHHhcccc
Confidence 99999887764 588888889999999999999999999999999999999999999999999999999999999985
Q ss_pred CCCCcCCCccccccEeeeccC
Q 002220 901 NMLQSIPELPRGLLRLNAQNC 921 (951)
Q Consensus 901 ~~l~~lp~~~~~L~~L~i~~C 921 (951)
.++.+| |.|-.|++-+.
T Consensus 184 -rl~vlp---pel~~l~l~~~ 200 (264)
T KOG0617|consen 184 -RLTVLP---PELANLDLVGN 200 (264)
T ss_pred -eeeecC---hhhhhhhhhhh
Confidence 455554 44555554443
No 27
>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).
Probab=99.49 E-value=3.2e-15 Score=163.71 Aligned_cols=161 Identities=26% Similarity=0.234 Sum_probs=82.6
Q ss_pred cccC-CCCcEEecccccccc----cccccccCCCCCCEEeccCCCCCCc----cchhcccCCCCcEEEcccCCCcc----
Q 002220 741 IECL-TNLETLDLRLCERLK----RVSTSICKLKSLGSLLLAFCSNLEG----FPEILEKMELLETLDLERTGVKE---- 807 (951)
Q Consensus 741 l~~l-~~L~~L~Ls~~~~~~----~~~~~~~~l~~L~~L~l~~~~~~~~----~~~~l~~l~~L~~L~l~~n~i~~---- 807 (951)
+..+ ++|+.|++++|.+.. .++..+..+++|++|++++|..... ++..+..+++|+.|++++|.+..
T Consensus 132 l~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~ 211 (319)
T cd00116 132 LKDLPPALEKLVLGRNRLEGASCEALAKALRANRDLKELNLANNGIGDAGIRALAEGLKANCNLEVLDLNNNGLTDEGAS 211 (319)
T ss_pred HHhCCCCceEEEcCCCcCCchHHHHHHHHHHhCCCcCEEECcCCCCchHHHHHHHHHHHhCCCCCEEeccCCccChHHHH
Confidence 3444 566666666665542 1233344556666666666654321 22334445566666666666542
Q ss_pred -cCccccCCCCCcEEeeccCCCCccCCcccCCc-CCCCCCCCEEeccCCCCCC-----cCccCCCCCCCCEEEccCCCCc
Q 002220 808 -LPPSFENLQGLRQLSLIGCSELKCSGWVLPTR-ISKLSSLERLQLSGCEIKE-----IPEDIDCLSSLEVLDLSGSKIE 880 (951)
Q Consensus 808 -l~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~-~~~l~~L~~L~L~~~~l~~-----l~~~l~~l~~L~~L~L~~n~l~ 880 (951)
+...+..+++|++|++++|.........+... ....+.|+.|++++|.++. +...+..+++|+.|++++|.++
T Consensus 212 ~l~~~~~~~~~L~~L~ls~n~l~~~~~~~l~~~~~~~~~~L~~L~l~~n~i~~~~~~~l~~~~~~~~~L~~l~l~~N~l~ 291 (319)
T cd00116 212 ALAETLASLKSLEVLNLGDNNLTDAGAAALASALLSPNISLLTLSLSCNDITDDGAKDLAEVLAEKESLLELDLRGNKFG 291 (319)
T ss_pred HHHHHhcccCCCCEEecCCCcCchHHHHHHHHHHhccCCCceEEEccCCCCCcHHHHHHHHHHhcCCCccEEECCCCCCc
Confidence 22334556666666666665442100000000 0123566777777666652 3334444566777777777665
Q ss_pred cc-----chhhcCC-CCCCEEeeCCCC
Q 002220 881 IL-----PTSIGQL-SRLRQLNLLDCN 901 (951)
Q Consensus 881 ~l-----~~~l~~l-~~L~~L~L~~~~ 901 (951)
.- ...+... +.|+.|++.+++
T Consensus 292 ~~~~~~~~~~~~~~~~~~~~~~~~~~~ 318 (319)
T cd00116 292 EEGAQLLAESLLEPGNELESLWVKDDS 318 (319)
T ss_pred HHHHHHHHHHHhhcCCchhhcccCCCC
Confidence 22 2233334 566666666654
No 28
>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).
Probab=99.44 E-value=1.6e-14 Score=158.27 Aligned_cols=159 Identities=21% Similarity=0.203 Sum_probs=100.2
Q ss_pred CCCcEEecccccccc----cccccccCC-CCCCEEeccCCCCCC----ccchhcccCCCCcEEEcccCCCc-----ccCc
Q 002220 745 TNLETLDLRLCERLK----RVSTSICKL-KSLGSLLLAFCSNLE----GFPEILEKMELLETLDLERTGVK-----ELPP 810 (951)
Q Consensus 745 ~~L~~L~Ls~~~~~~----~~~~~~~~l-~~L~~L~l~~~~~~~----~~~~~l~~l~~L~~L~l~~n~i~-----~l~~ 810 (951)
++|++|++++|.... .+...+..+ ++|+.|++++|.... .++..+..+++|++|++++|.+. .++.
T Consensus 108 ~~L~~L~ls~~~~~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~ 187 (319)
T cd00116 108 SSLQELKLNNNGLGDRGLRLLAKGLKDLPPALEKLVLGRNRLEGASCEALAKALRANRDLKELNLANNGIGDAGIRALAE 187 (319)
T ss_pred CcccEEEeeCCccchHHHHHHHHHHHhCCCCceEEEcCCCcCCchHHHHHHHHHHhCCCcCEEECcCCCCchHHHHHHHH
Confidence 448888888776552 223345566 788888888887552 23445666777888888888776 2333
Q ss_pred cccCCCCCcEEeeccCCCCccCCcccCCcCCCCCCCCEEeccCCCCCCc-----CccC-CCCCCCCEEEccCCCCc----
Q 002220 811 SFENLQGLRQLSLIGCSELKCSGWVLPTRISKLSSLERLQLSGCEIKEI-----PEDI-DCLSSLEVLDLSGSKIE---- 880 (951)
Q Consensus 811 ~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~l~~l-----~~~l-~~l~~L~~L~L~~n~l~---- 880 (951)
.+..+++|+.|++++|.........++..+..+++|+.|++++|.++.. ...+ ...+.|++|++++|.++
T Consensus 188 ~l~~~~~L~~L~L~~n~i~~~~~~~l~~~~~~~~~L~~L~ls~n~l~~~~~~~l~~~~~~~~~~L~~L~l~~n~i~~~~~ 267 (319)
T cd00116 188 GLKANCNLEVLDLNNNGLTDEGASALAETLASLKSLEVLNLGDNNLTDAGAAALASALLSPNISLLTLSLSCNDITDDGA 267 (319)
T ss_pred HHHhCCCCCEEeccCCccChHHHHHHHHHhcccCCCCEEecCCCcCchHHHHHHHHHHhccCCCceEEEccCCCCCcHHH
Confidence 4555678888888887654321112334456677788888888877641 1111 12467888888888775
Q ss_pred -ccchhhcCCCCCCEEeeCCCCCC
Q 002220 881 -ILPTSIGQLSRLRQLNLLDCNML 903 (951)
Q Consensus 881 -~l~~~l~~l~~L~~L~L~~~~~l 903 (951)
.+...+..+++|+.+++++|+.-
T Consensus 268 ~~l~~~~~~~~~L~~l~l~~N~l~ 291 (319)
T cd00116 268 KDLAEVLAEKESLLELDLRGNKFG 291 (319)
T ss_pred HHHHHHHhcCCCccEEECCCCCCc
Confidence 33345566677888888776543
No 29
>PRK04841 transcriptional regulator MalT; Provisional
Probab=99.43 E-value=1.3e-11 Score=155.36 Aligned_cols=298 Identities=15% Similarity=0.145 Sum_probs=183.4
Q ss_pred ccCCCCCCcccchhhHHHHHHhhccCCCCcEEEEEEecCCChhHHHHHHHHHHhhccccceeecccccchhcCCCChHHH
Q 002220 180 TASTYSDGFVGLNSRIQKIKSLLCIGLPDFRTIGIWGMGGIGKTTLAGAVFKLISREFEGKCFMPNVREESENGGGLVYL 259 (951)
Q Consensus 180 ~~~~~~~~~vGr~~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~l 259 (951)
.+|.....+|-|..-.+.+.. ....+++.|+|++|.||||++.++.+.. +.++|+. .... ..+...+
T Consensus 8 ~~p~~~~~~~~R~rl~~~l~~-----~~~~~~~~v~apaG~GKTtl~~~~~~~~----~~~~w~~-l~~~---d~~~~~f 74 (903)
T PRK04841 8 SRPVRLHNTVVRERLLAKLSG-----ANNYRLVLVTSPAGYGKTTLISQWAAGK----NNLGWYS-LDES---DNQPERF 74 (903)
T ss_pred CCCCCccccCcchHHHHHHhc-----ccCCCeEEEECCCCCCHHHHHHHHHHhC----CCeEEEe-cCcc---cCCHHHH
Confidence 355666788888866665543 2457899999999999999999988632 3577874 3221 2233444
Q ss_pred HHHHHHHHhcCcccc----------CCCCCh----HHHHHHhc--CCcEEEEEeCCCChH---HHHHHHhccCCCCCCCE
Q 002220 260 RDRVVSEIFQEDIKI----------GTPYLP----DYIVERLN--RMKVLTVLDDVNKVR---QLHYLACVLDQFGPGSR 320 (951)
Q Consensus 260 ~~~il~~l~~~~~~~----------~~~~~~----~~l~~~l~--~~~~LlVlDdv~~~~---~~~~l~~~~~~~~~gs~ 320 (951)
...++..+....... ...... ..+...+. +.+++|||||+.... ..+.+...+....++.+
T Consensus 75 ~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~lvlDD~h~~~~~~~~~~l~~l~~~~~~~~~ 154 (903)
T PRK04841 75 ASYLIAALQQATNGHCSKSEALAQKRQYASLSSLFAQLFIELADWHQPLYLVIDDYHLITNPEIHEAMRFFLRHQPENLT 154 (903)
T ss_pred HHHHHHHHHHhcCcccchhhhhhccCCcCCHHHHHHHHHHHHhcCCCCEEEEEeCcCcCCChHHHHHHHHHHHhCCCCeE
Confidence 455555553211110 000111 12222232 679999999996542 12233333333456778
Q ss_pred EEEEeCCchhhh--hcCCCccceEEcC----CCChhhhHHHHhhhhccCCCCChhHHHHHHHHHHHcCCCchHHHHHhhh
Q 002220 321 IIITTRDKRILD--DFGVCDTDIYEVN----KLRFHEALVLFSNFAFKENQCPGDLLALLERVLKYANGNPLALRVLGSF 394 (951)
Q Consensus 321 IlvTtR~~~v~~--~~~~~~~~~~~l~----~L~~~~a~~Lf~~~~~~~~~~~~~~~~~~~~i~~~~~g~PLal~~~~~~ 394 (951)
+|||||...-.. ..... ....++. +|+.+|+.+||........ + .+.+.++.+.|+|+|+++..++..
T Consensus 155 lv~~sR~~~~~~~~~l~~~-~~~~~l~~~~l~f~~~e~~~ll~~~~~~~~--~---~~~~~~l~~~t~Gwp~~l~l~~~~ 228 (903)
T PRK04841 155 LVVLSRNLPPLGIANLRVR-DQLLEIGSQQLAFDHQEAQQFFDQRLSSPI--E---AAESSRLCDDVEGWATALQLIALS 228 (903)
T ss_pred EEEEeCCCCCCchHhHHhc-CcceecCHHhCCCCHHHHHHHHHhccCCCC--C---HHHHHHHHHHhCChHHHHHHHHHH
Confidence 989999852221 11111 1345566 9999999999987653221 1 245678999999999999998877
Q ss_pred cCCCCHHHHHHHHHHHhcCCCcchHHHH-HHhhcCCchhhHhhhhheecccCCCCHHHHHHHhcCCCCcccchHHHHhcc
Q 002220 395 FHRKSKSDWEKALENLNRISDPDIYDVL-KISYNDLRPEEKSMFLDIACFFAGEKKDFLTCILDDPNFPHCGLNVLIEKS 473 (951)
Q Consensus 395 L~~~~~~~w~~~l~~l~~~~~~~i~~~l-~~sy~~L~~~~k~~fl~~a~f~~~~~~~~l~~~~~~~~~~~~~l~~L~~~s 473 (951)
+...... .......+...+...+...+ ...++.||++.++.+...|+++ .+..+.+..+. +.......++.|.+.+
T Consensus 229 ~~~~~~~-~~~~~~~~~~~~~~~~~~~l~~~v~~~l~~~~~~~l~~~a~~~-~~~~~l~~~l~-~~~~~~~~L~~l~~~~ 305 (903)
T PRK04841 229 ARQNNSS-LHDSARRLAGINASHLSDYLVEEVLDNVDLETRHFLLRCSVLR-SMNDALIVRVT-GEENGQMRLEELERQG 305 (903)
T ss_pred HhhCCCc-hhhhhHhhcCCCchhHHHHHHHHHHhcCCHHHHHHHHHhcccc-cCCHHHHHHHc-CCCcHHHHHHHHHHCC
Confidence 6543210 01111222211233455554 3348899999999999999987 55544444443 3333566789999999
Q ss_pred Ccee-e---CCeEEccHHHHHHHHHHHhhh
Q 002220 474 LITM-S---GYDIRMHDLLQEMGREIVRQE 499 (951)
Q Consensus 474 Li~~-~---~~~~~mH~lv~~~~~~~~~~e 499 (951)
++.. . +..|+.|++++++.+.....+
T Consensus 306 l~~~~~~~~~~~yr~H~L~r~~l~~~l~~~ 335 (903)
T PRK04841 306 LFIQRMDDSGEWFRYHPLFASFLRHRCQWE 335 (903)
T ss_pred CeeEeecCCCCEEehhHHHHHHHHHHHHhc
Confidence 9653 2 237999999999998876443
No 30
>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]
Probab=99.22 E-value=4.7e-12 Score=151.31 Aligned_cols=126 Identities=20% Similarity=0.181 Sum_probs=98.7
Q ss_pred cCCCccEEEEcCCCCCCCCccCcceecCcccccCCCcceEEEeecCC--CCCCCCcc--ccccceecccCCc-ccccccc
Q 002220 551 NMSNLRLLKFYMPEHRGLPIMSSNVRLDEDLECLPEELRYLYWHEYP--LKTLPLDF--DLENLIALHLPYS-EVEQIWK 625 (951)
Q Consensus 551 ~l~~Lr~L~l~~~~~~~l~~~~~~~~~~~~~~~l~~~L~~L~l~~~~--l~~lp~~~--~l~~L~~L~L~~~-~i~~l~~ 625 (951)
.....|...+.+|.+..++... .. ++|+.|-+.+|. +..++..| .++.|++|||++| .+.++|.
T Consensus 521 ~~~~~rr~s~~~~~~~~~~~~~----------~~-~~L~tLll~~n~~~l~~is~~ff~~m~~LrVLDLs~~~~l~~LP~ 589 (889)
T KOG4658|consen 521 SWNSVRRMSLMNNKIEHIAGSS----------EN-PKLRTLLLQRNSDWLLEISGEFFRSLPLLRVLDLSGNSSLSKLPS 589 (889)
T ss_pred chhheeEEEEeccchhhccCCC----------CC-CccceEEEeecchhhhhcCHHHHhhCcceEEEECCCCCccCcCCh
Confidence 3466777878776543322211 11 268999999886 77777754 7999999999965 5789999
Q ss_pred ccccccccceeccCCCCCCCcCCCCCCCCCCcEEecCCCCCCCccCcccccCCcccEEeccC
Q 002220 626 GQKEAFKLKFIDLHDSHNLTSIPEPLEAPNLERINLCNCTNLSYIPLYVQNFHNLGSLSLKG 687 (951)
Q Consensus 626 ~~~~l~~L~~L~L~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~L~~ 687 (951)
.++.+-+||+|+++++.+....+.+.++..|.+|++..+..+..+|.....|.+|++|.+..
T Consensus 590 ~I~~Li~LryL~L~~t~I~~LP~~l~~Lk~L~~Lnl~~~~~l~~~~~i~~~L~~Lr~L~l~~ 651 (889)
T KOG4658|consen 590 SIGELVHLRYLDLSDTGISHLPSGLGNLKKLIYLNLEVTGRLESIPGILLELQSLRVLRLPR 651 (889)
T ss_pred HHhhhhhhhcccccCCCccccchHHHHHHhhheeccccccccccccchhhhcccccEEEeec
Confidence 99999999999999997654444666999999999999888777777777899999999976
No 31
>COG2909 MalT ATP-dependent transcriptional regulator [Transcription]
Probab=99.14 E-value=1.8e-09 Score=122.23 Aligned_cols=300 Identities=17% Similarity=0.212 Sum_probs=189.1
Q ss_pred ccCCCCCCcccchhhHHHHHHhhccCCCCcEEEEEEecCCChhHHHHHHHHHHhhccccceeecccccchhcCCCChHHH
Q 002220 180 TASTYSDGFVGLNSRIQKIKSLLCIGLPDFRTIGIWGMGGIGKTTLAGAVFKLISREFEGKCFMPNVREESENGGGLVYL 259 (951)
Q Consensus 180 ~~~~~~~~~vGr~~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~l 259 (951)
.+|..+.+.|-|..-++.+.. ..+.|.+.|..++|.|||||+.+++. ....-..+.|...-.. ..+....
T Consensus 13 ~~P~~~~~~v~R~rL~~~L~~-----~~~~RL~li~APAGfGKttl~aq~~~-~~~~~~~v~Wlslde~----dndp~rF 82 (894)
T COG2909 13 VRPVRPDNYVVRPRLLDRLRR-----ANDYRLILISAPAGFGKTTLLAQWRE-LAADGAAVAWLSLDES----DNDPARF 82 (894)
T ss_pred CCCCCcccccccHHHHHHHhc-----CCCceEEEEeCCCCCcHHHHHHHHHH-hcCcccceeEeecCCc----cCCHHHH
Confidence 345556778888766555554 34689999999999999999999988 4445556778753222 4456666
Q ss_pred HHHHHHHHhcCccccCCC---------C-Ch----HHHHHHhc--CCcEEEEEeCCC---ChHHHHHHHhccCCCCCCCE
Q 002220 260 RDRVVSEIFQEDIKIGTP---------Y-LP----DYIVERLN--RMKVLTVLDDVN---KVRQLHYLACVLDQFGPGSR 320 (951)
Q Consensus 260 ~~~il~~l~~~~~~~~~~---------~-~~----~~l~~~l~--~~~~LlVlDdv~---~~~~~~~l~~~~~~~~~gs~ 320 (951)
...++..+....+...+. . .. ..+...+. .++..+||||.. ++.--..+...+....++-+
T Consensus 83 ~~yLi~al~~~~p~~~~~a~~l~q~~~~~~l~~l~~~L~~Ela~~~~pl~LVlDDyHli~~~~l~~~l~fLl~~~P~~l~ 162 (894)
T COG2909 83 LSYLIAALQQATPTLGDEAQTLLQKHQYVSLESLLSSLLNELASYEGPLYLVLDDYHLISDPALHEALRFLLKHAPENLT 162 (894)
T ss_pred HHHHHHHHHHhCccccHHHHHHHHhcccccHHHHHHHHHHHHHhhcCceEEEeccccccCcccHHHHHHHHHHhCCCCeE
Confidence 777777665432221111 0 01 22222222 468999999974 33333333333344467889
Q ss_pred EEEEeCCchhhhhcCCC-ccceEEcC----CCChhhhHHHHhhhhccCCCCChhHHHHHHHHHHHcCCCchHHHHHhhhc
Q 002220 321 IIITTRDKRILDDFGVC-DTDIYEVN----KLRFHEALVLFSNFAFKENQCPGDLLALLERVLKYANGNPLALRVLGSFF 395 (951)
Q Consensus 321 IlvTtR~~~v~~~~~~~-~~~~~~l~----~L~~~~a~~Lf~~~~~~~~~~~~~~~~~~~~i~~~~~g~PLal~~~~~~L 395 (951)
++||||+..-....... .....+++ .|+.+|+.++|.......- + ..-++.+.+..+|.+-|+..++=.+
T Consensus 163 lvv~SR~rP~l~la~lRlr~~llEi~~~~Lrf~~eE~~~fl~~~~~l~L---d--~~~~~~L~~~teGW~~al~L~aLa~ 237 (894)
T COG2909 163 LVVTSRSRPQLGLARLRLRDELLEIGSEELRFDTEEAAAFLNDRGSLPL---D--AADLKALYDRTEGWAAALQLIALAL 237 (894)
T ss_pred EEEEeccCCCCcccceeehhhHHhcChHhhcCChHHHHHHHHHcCCCCC---C--hHHHHHHHhhcccHHHHHHHHHHHc
Confidence 99999988443221100 01233333 4899999999987752111 1 1346789999999999999998887
Q ss_pred CCC-CHHHHHHHHHHHhcCCCcchH-HHHHHhhcCCchhhHhhhhheecccCCCCHHHHHHHhcCCCCcccchHHHHhcc
Q 002220 396 HRK-SKSDWEKALENLNRISDPDIY-DVLKISYNDLRPEEKSMFLDIACFFAGEKKDFLTCILDDPNFPHCGLNVLIEKS 473 (951)
Q Consensus 396 ~~~-~~~~w~~~l~~l~~~~~~~i~-~~l~~sy~~L~~~~k~~fl~~a~f~~~~~~~~l~~~~~~~~~~~~~l~~L~~~s 473 (951)
++. +.+.-...+. .. ...+. -...-.++.||++.+..++.+|++..- -+.+...+.+......-++.|.+++
T Consensus 238 ~~~~~~~q~~~~Ls---G~-~~~l~dYL~eeVld~Lp~~l~~FLl~~svl~~f--~~eL~~~Ltg~~ng~amLe~L~~~g 311 (894)
T COG2909 238 RNNTSAEQSLRGLS---GA-ASHLSDYLVEEVLDRLPPELRDFLLQTSVLSRF--NDELCNALTGEENGQAMLEELERRG 311 (894)
T ss_pred cCCCcHHHHhhhcc---ch-HHHHHHHHHHHHHhcCCHHHHHHHHHHHhHHHh--hHHHHHHHhcCCcHHHHHHHHHhCC
Confidence 743 3322211111 11 11122 234456789999999999999988542 2345555545444555689999999
Q ss_pred Cceee----CCeEEccHHHHHHHHHHHhhhc
Q 002220 474 LITMS----GYDIRMHDLLQEMGREIVRQEC 500 (951)
Q Consensus 474 Li~~~----~~~~~mH~lv~~~~~~~~~~e~ 500 (951)
|+-.. ++.|+.|.++.+|-+.....+.
T Consensus 312 LFl~~Ldd~~~WfryH~LFaeFL~~r~~~~~ 342 (894)
T COG2909 312 LFLQRLDDEGQWFRYHHLFAEFLRQRLQREL 342 (894)
T ss_pred CceeeecCCCceeehhHHHHHHHHhhhcccc
Confidence 97654 6789999999999987766643
No 32
>PRK00411 cdc6 cell division control protein 6; Reviewed
Probab=99.12 E-value=5.3e-09 Score=117.77 Aligned_cols=249 Identities=16% Similarity=0.106 Sum_probs=145.3
Q ss_pred CCCCCCcccchhhHHHHHHhhccC--CCCcEEEEEEecCCChhHHHHHHHHHHhhcccc--ceeecccccchhcCCCChH
Q 002220 182 STYSDGFVGLNSRIQKIKSLLCIG--LPDFRTIGIWGMGGIGKTTLAGAVFKLISREFE--GKCFMPNVREESENGGGLV 257 (951)
Q Consensus 182 ~~~~~~~vGr~~~~~~l~~~L~~~--~~~~~vv~I~G~gGiGKTtLA~~~~~~~~~~f~--~~~~~~~~~~~~~~~~~~~ 257 (951)
...++.++||++++++|...+... ......+.|+|++|+|||++++.+++....... ..+++.+.. .....
T Consensus 26 ~~~P~~l~~Re~e~~~l~~~l~~~~~~~~~~~~lI~G~~GtGKT~l~~~v~~~l~~~~~~~~~v~in~~~-----~~~~~ 100 (394)
T PRK00411 26 DYVPENLPHREEQIEELAFALRPALRGSRPLNVLIYGPPGTGKTTTVKKVFEELEEIAVKVVYVYINCQI-----DRTRY 100 (394)
T ss_pred CCcCCCCCCHHHHHHHHHHHHHHHhCCCCCCeEEEECCCCCCHHHHHHHHHHHHHHhcCCcEEEEEECCc-----CCCHH
Confidence 345678999999999999988432 234456789999999999999999997765442 233443211 23345
Q ss_pred HHHHHHHHHHhcCccccCC--CCCh-HHHHHHhc--CCcEEEEEeCCCChH------HHHHHHhccCCCCCCC--EEEEE
Q 002220 258 YLRDRVVSEIFQEDIKIGT--PYLP-DYIVERLN--RMKVLTVLDDVNKVR------QLHYLACVLDQFGPGS--RIIIT 324 (951)
Q Consensus 258 ~l~~~il~~l~~~~~~~~~--~~~~-~~l~~~l~--~~~~LlVlDdv~~~~------~~~~l~~~~~~~~~gs--~IlvT 324 (951)
.+...++.++......... .... +.+.+.+. +++.+||||+++... .+..+...... .+++ .+|.+
T Consensus 101 ~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~viviDE~d~l~~~~~~~~l~~l~~~~~~-~~~~~v~vI~i 179 (394)
T PRK00411 101 AIFSEIARQLFGHPPPSSGLSFDELFDKIAEYLDERDRVLIVALDDINYLFEKEGNDVLYSLLRAHEE-YPGARIGVIGI 179 (394)
T ss_pred HHHHHHHHHhcCCCCCCCCCCHHHHHHHHHHHHHhcCCEEEEEECCHhHhhccCCchHHHHHHHhhhc-cCCCeEEEEEE
Confidence 6667777777652211111 1111 44455554 456899999997643 24444332222 1233 35666
Q ss_pred eCCchhhhhcC-----CCccceEEcCCCChhhhHHHHhhhhcc---CCCCCh-hHHHHHHHHHHHcCCCchHHHHHhhhc
Q 002220 325 TRDKRILDDFG-----VCDTDIYEVNKLRFHEALVLFSNFAFK---ENQCPG-DLLALLERVLKYANGNPLALRVLGSFF 395 (951)
Q Consensus 325 tR~~~v~~~~~-----~~~~~~~~l~~L~~~~a~~Lf~~~~~~---~~~~~~-~~~~~~~~i~~~~~g~PLal~~~~~~L 395 (951)
+....+..... ......+.+++++.++..+++..++.. .....+ ..+.+++......|..+.|+.++-...
T Consensus 180 ~~~~~~~~~l~~~~~s~~~~~~i~f~py~~~e~~~il~~r~~~~~~~~~~~~~~l~~i~~~~~~~~Gd~r~a~~ll~~a~ 259 (394)
T PRK00411 180 SSDLTFLYILDPRVKSVFRPEEIYFPPYTADEIFDILKDRVEEGFYPGVVDDEVLDLIADLTAREHGDARVAIDLLRRAG 259 (394)
T ss_pred ECCcchhhhcCHHHHhcCCcceeecCCCCHHHHHHHHHHHHHhhcccCCCCHhHHHHHHHHHHHhcCcHHHHHHHHHHHH
Confidence 66554332211 011256899999999999999877632 222222 223333333333455677776654321
Q ss_pred -----CC---CCHHHHHHHHHHHhcCCCcchHHHHHHhhcCCchhhHhhhhheecc
Q 002220 396 -----HR---KSKSDWEKALENLNRISDPDIYDVLKISYNDLRPEEKSMFLDIACF 443 (951)
Q Consensus 396 -----~~---~~~~~w~~~l~~l~~~~~~~i~~~l~~sy~~L~~~~k~~fl~~a~f 443 (951)
++ -+.+....++.... .....-.+..||.++|..+..++..
T Consensus 260 ~~a~~~~~~~I~~~~v~~a~~~~~-------~~~~~~~~~~L~~~~k~~L~ai~~~ 308 (394)
T PRK00411 260 LIAEREGSRKVTEEDVRKAYEKSE-------IVHLSEVLRTLPLHEKLLLRAIVRL 308 (394)
T ss_pred HHHHHcCCCCcCHHHHHHHHHHHH-------HHHHHHHHhcCCHHHHHHHHHHHHH
Confidence 11 15566666666541 2334556789999998877666533
No 33
>PF01637 Arch_ATPase: Archaeal ATPase; InterPro: IPR011579 This domain has been found in a number of bacterial and archaeal proteins, all of which contain a conserved P-loop motif that is involved in binding ATP.; GO: 0005524 ATP binding; PDB: 2FNA_A 2QEN_A.
Probab=99.12 E-value=1.4e-10 Score=120.64 Aligned_cols=198 Identities=21% Similarity=0.247 Sum_probs=101.5
Q ss_pred cccchhhHHHHHHhhccCCCCcEEEEEEecCCChhHHHHHHHHHHhhccccceeecccccchhcCCCChHHH------HH
Q 002220 188 FVGLNSRIQKIKSLLCIGLPDFRTIGIWGMGGIGKTTLAGAVFKLISREFEGKCFMPNVREESENGGGLVYL------RD 261 (951)
Q Consensus 188 ~vGr~~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~l------~~ 261 (951)
|+||+.++++|.+++..+ ..+.+.|+|+.|+|||+|++++.+..+..-..++|+........ ...... ..
T Consensus 1 F~gR~~el~~l~~~l~~~--~~~~~~l~G~rg~GKTsLl~~~~~~~~~~~~~~~y~~~~~~~~~--~~~~~~~~~~~~~~ 76 (234)
T PF01637_consen 1 FFGREKELEKLKELLESG--PSQHILLYGPRGSGKTSLLKEFINELKEKGYKVVYIDFLEESNE--SSLRSFIEETSLAD 76 (234)
T ss_dssp S-S-HHHHHHHHHCHHH----SSEEEEEESTTSSHHHHHHHHHHHCT--EECCCHHCCTTBSHH--HHHHHHHHHHHHHC
T ss_pred CCCHHHHHHHHHHHHHhh--cCcEEEEEcCCcCCHHHHHHHHHHHhhhcCCcEEEEecccchhh--hHHHHHHHHHHHHH
Confidence 799999999999998643 35789999999999999999999987544334555543222111 001111 11
Q ss_pred HHHHHHhcCccc-----------cCCCCChHHHHHHhc--CCcEEEEEeCCCChH-------H-HHHHHhccCC--CCCC
Q 002220 262 RVVSEIFQEDIK-----------IGTPYLPDYIVERLN--RMKVLTVLDDVNKVR-------Q-LHYLACVLDQ--FGPG 318 (951)
Q Consensus 262 ~il~~l~~~~~~-----------~~~~~~~~~l~~~l~--~~~~LlVlDdv~~~~-------~-~~~l~~~~~~--~~~g 318 (951)
.+...+...... .........+.+.+. +++++||+||+.... . ...+...+.. ....
T Consensus 77 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~iiviDe~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 156 (234)
T PF01637_consen 77 ELSEALGISIPSITLEKISKDLSEDSFSALERLLEKLKKKGKKVIIVIDEFQYLAIASEEDKDFLKSLRSLLDSLLSQQN 156 (234)
T ss_dssp HCHHHHHHHCCTSTTEEEECTS-GG-G--HHHHHHHHHHCHCCEEEEEETGGGGGBCTTTTHHHHHHHHHHHHH----TT
T ss_pred HHHHHHhhhcccccchhhhhcchhhHHHHHHHHHHHHHhcCCcEEEEEecHHHHhhcccchHHHHHHHHHHHhhccccCC
Confidence 111112111000 001111133334443 345999999986554 1 2222222221 1233
Q ss_pred CEEEEEeCCchhhhhc------CCCccceEEcCCCChhhhHHHHhhhhccCCCCChhHHHHHHHHHHHcCCCchHHHH
Q 002220 319 SRIIITTRDKRILDDF------GVCDTDIYEVNKLRFHEALVLFSNFAFKENQCPGDLLALLERVLKYANGNPLALRV 390 (951)
Q Consensus 319 s~IlvTtR~~~v~~~~------~~~~~~~~~l~~L~~~~a~~Lf~~~~~~~~~~~~~~~~~~~~i~~~~~g~PLal~~ 390 (951)
..+++++....+.... .......+.+++|+.+++++++...+-..... +.-.+..++|...+||+|..|..
T Consensus 157 ~~~v~~~S~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~e~~~~~~~~~~~~~~~-~~~~~~~~~i~~~~gG~P~~l~~ 233 (234)
T PF01637_consen 157 VSIVITGSSDSLMEEFLDDKSPLFGRFSHIELKPLSKEEAREFLKELFKELIKL-PFSDEDIEEIYSLTGGNPRYLQE 233 (234)
T ss_dssp EEEEEEESSHHHHHHTT-TTSTTTT---EEEE----HHHHHHHHHHHHHCC-------HHHHHHHHHHHTT-HHHHHH
T ss_pred ceEEEECCchHHHHHhhcccCccccccceEEEeeCCHHHHHHHHHHHHHHhhcc-cCCHHHHHHHHHHhCCCHHHHhc
Confidence 3455555544443320 11122459999999999999999865322111 11235568999999999998764
No 34
>TIGR00635 ruvB Holliday junction DNA helicase, RuvB subunit. RuvA specifically binds Holliday junctions as a sandwich of two tetramers and maintains the configuration of the junction. It forms a complex with two hexameric rings of RuvB, the subunit that contains helicase activity. The complex drives ATP-dependent branch migration of the Holliday junction recombination intermediate. The endonuclease RuvC resolves junctions.
Probab=99.10 E-value=2.1e-09 Score=116.26 Aligned_cols=262 Identities=14% Similarity=0.113 Sum_probs=145.4
Q ss_pred CCcccchhhHHHHHHhhccC---CCCcEEEEEEecCCChhHHHHHHHHHHhhccccceeecccccchhcCCCChHHHHHH
Q 002220 186 DGFVGLNSRIQKIKSLLCIG---LPDFRTIGIWGMGGIGKTTLAGAVFKLISREFEGKCFMPNVREESENGGGLVYLRDR 262 (951)
Q Consensus 186 ~~~vGr~~~~~~l~~~L~~~---~~~~~vv~I~G~gGiGKTtLA~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~l~~~ 262 (951)
..|||+++.+++|..++... ......+.++|++|+|||+||+.+++.....+.. .. ... ......+. .
T Consensus 4 ~~~iG~~~~~~~l~~~l~~~~~~~~~~~~~ll~Gp~G~GKT~la~~ia~~~~~~~~~---~~-~~~----~~~~~~l~-~ 74 (305)
T TIGR00635 4 AEFIGQEKVKEQLQLFIEAAKMRQEALDHLLLYGPPGLGKTTLAHIIANEMGVNLKI---TS-GPA----LEKPGDLA-A 74 (305)
T ss_pred HHHcCHHHHHHHHHHHHHHHHhcCCCCCeEEEECCCCCCHHHHHHHHHHHhCCCEEE---ec-cch----hcCchhHH-H
Confidence 46999999999999888521 2335568899999999999999999977544321 10 000 00111111 1
Q ss_pred HHHHHhcCcc------ccCCCCChHHHHHHhcCCcEEEEEeCCCChHHHHHHHhccCCCCCCCEEEEEeCCchhhhhc--
Q 002220 263 VVSEIFQEDI------KIGTPYLPDYIVERLNRMKVLTVLDDVNKVRQLHYLACVLDQFGPGSRIIITTRDKRILDDF-- 334 (951)
Q Consensus 263 il~~l~~~~~------~~~~~~~~~~l~~~l~~~~~LlVlDdv~~~~~~~~l~~~~~~~~~gs~IlvTtR~~~v~~~~-- 334 (951)
.+..+..... ..-.....+.+...+.+.+..+|+|+..+..++.. ...+.+-|.+||+...+....
T Consensus 75 ~l~~~~~~~vl~iDEi~~l~~~~~e~l~~~~~~~~~~~v~~~~~~~~~~~~------~~~~~~li~~t~~~~~l~~~l~s 148 (305)
T TIGR00635 75 ILTNLEEGDVLFIDEIHRLSPAVEELLYPAMEDFRLDIVIGKGPSARSVRL------DLPPFTLVGATTRAGMLTSPLRD 148 (305)
T ss_pred HHHhcccCCEEEEehHhhhCHHHHHHhhHHHhhhheeeeeccCccccceee------cCCCeEEEEecCCccccCHHHHh
Confidence 1111111000 00000001233333344444444544433332221 112345566677765443221
Q ss_pred CCCccceEEcCCCChhhhHHHHhhhhccCCCCChhHHHHHHHHHHHcCCCchHHHHHhhhcC------C---CCHHHHHH
Q 002220 335 GVCDTDIYEVNKLRFHEALVLFSNFAFKENQCPGDLLALLERVLKYANGNPLALRVLGSFFH------R---KSKSDWEK 405 (951)
Q Consensus 335 ~~~~~~~~~l~~L~~~~a~~Lf~~~~~~~~~~~~~~~~~~~~i~~~~~g~PLal~~~~~~L~------~---~~~~~w~~ 405 (951)
... ..+++++++.++..+++.+.+...... -..+.+..|++.|+|.|-.+..++..+. + .+.+....
T Consensus 149 R~~--~~~~l~~l~~~e~~~il~~~~~~~~~~--~~~~al~~ia~~~~G~pR~~~~ll~~~~~~a~~~~~~~it~~~v~~ 224 (305)
T TIGR00635 149 RFG--IILRLEFYTVEELAEIVSRSAGLLNVE--IEPEAALEIARRSRGTPRIANRLLRRVRDFAQVRGQKIINRDIALK 224 (305)
T ss_pred hcc--eEEEeCCCCHHHHHHHHHHHHHHhCCC--cCHHHHHHHHHHhCCCcchHHHHHHHHHHHHHHcCCCCcCHHHHHH
Confidence 111 568999999999999999887533221 1235678899999999976655544221 0 01111111
Q ss_pred HHHHHhcCCCcchHHHHHHhhcCCchhhHhhhh-heecccCC-CCHHHHHHHhcCCCC-cccchH-HHHhccCceee
Q 002220 406 ALENLNRISDPDIYDVLKISYNDLRPEEKSMFL-DIACFFAG-EKKDFLTCILDDPNF-PHCGLN-VLIEKSLITMS 478 (951)
Q Consensus 406 ~l~~l~~~~~~~i~~~l~~sy~~L~~~~k~~fl-~~a~f~~~-~~~~~l~~~~~~~~~-~~~~l~-~L~~~sLi~~~ 478 (951)
....+...|..+++..+..+. .++.+..+ ...+.+...+..... ....++ .|++++||...
T Consensus 225 ------------~l~~l~~~~~~l~~~~~~~L~al~~~~~~~~~~~~~ia~~lg~~~~~~~~~~e~~Li~~~li~~~ 289 (305)
T TIGR00635 225 ------------ALEMLMIDELGLDEIDRKLLSVLIEQFQGGPVGLKTLAAALGEDADTIEDVYEPYLLQIGFLQRT 289 (305)
T ss_pred ------------HHHHhCCCCCCCCHHHHHHHHHHHHHhCCCcccHHHHHHHhCCCcchHHHhhhHHHHHcCCcccC
Confidence 222245667889888877665 44555433 455666666655544 555567 69999999754
No 35
>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]
Probab=99.08 E-value=1.9e-11 Score=120.28 Aligned_cols=132 Identities=27% Similarity=0.340 Sum_probs=102.4
Q ss_pred ccCCCCCCEEeccCCCCCCccchhcccCCCCcEEEcccCCCcccCccccCCCCCcEEeeccCCCCccCCcccCCcCCCCC
Q 002220 765 ICKLKSLGSLLLAFCSNLEGFPEILEKMELLETLDLERTGVKELPPSFENLQGLRQLSLIGCSELKCSGWVLPTRISKLS 844 (951)
Q Consensus 765 ~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~n~i~~l~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~l~ 844 (951)
+...+.|++|++++|.+ +.+.+...-+|.++.|++++|.+..+.. +..+++|+.|+|++|...++.||. ..+.
T Consensus 280 ~dTWq~LtelDLS~N~I-~~iDESvKL~Pkir~L~lS~N~i~~v~n-La~L~~L~~LDLS~N~Ls~~~Gwh-----~KLG 352 (490)
T KOG1259|consen 280 ADTWQELTELDLSGNLI-TQIDESVKLAPKLRRLILSQNRIRTVQN-LAELPQLQLLDLSGNLLAECVGWH-----LKLG 352 (490)
T ss_pred cchHhhhhhccccccch-hhhhhhhhhccceeEEeccccceeeehh-hhhcccceEeecccchhHhhhhhH-----hhhc
Confidence 34456788888888763 4556667778888999999998887754 788889999999998888766643 3566
Q ss_pred CCCEEeccCCCCCCcCccCCCCCCCCEEEccCCCCcccc--hhhcCCCCCCEEeeCCCCCCC
Q 002220 845 SLERLQLSGCEIKEIPEDIDCLSSLEVLDLSGSKIEILP--TSIGQLSRLRQLNLLDCNMLQ 904 (951)
Q Consensus 845 ~L~~L~L~~~~l~~l~~~l~~l~~L~~L~L~~n~l~~l~--~~l~~l~~L~~L~L~~~~~l~ 904 (951)
+.+.|.|+.|.+.++. +++.+-+|..||+++|+|+.+. ..++++|.|+.|.|.+||.-.
T Consensus 353 NIKtL~La~N~iE~LS-GL~KLYSLvnLDl~~N~Ie~ldeV~~IG~LPCLE~l~L~~NPl~~ 413 (490)
T KOG1259|consen 353 NIKTLKLAQNKIETLS-GLRKLYSLVNLDLSSNQIEELDEVNHIGNLPCLETLRLTGNPLAG 413 (490)
T ss_pred CEeeeehhhhhHhhhh-hhHhhhhheeccccccchhhHHHhcccccccHHHHHhhcCCCccc
Confidence 7888899988887763 5677888899999999888665 578889999999998887544
No 36
>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]
Probab=99.07 E-value=5.3e-12 Score=135.02 Aligned_cols=167 Identities=26% Similarity=0.362 Sum_probs=102.7
Q ss_pred eccccCCCCCccCcccccCCCCcEEecccccccccccccccCCCCCCEEeccCCCCCCccchhcccCCCCcEEEcccCCC
Q 002220 726 KLRLWYTPIEEVPSSIECLTNLETLDLRLCERLKRVSTSICKLKSLGSLLLAFCSNLEGFPEILEKMELLETLDLERTGV 805 (951)
Q Consensus 726 ~L~l~~~~l~~lp~~l~~l~~L~~L~Ls~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~n~i 805 (951)
..+++.|.+.++|..+..+..|+.|.|..|.+ ..+|..++++..|+.|+|+.|. +..+|..+..++ |+.|-+++|.+
T Consensus 79 ~aDlsrNR~~elp~~~~~f~~Le~liLy~n~~-r~ip~~i~~L~~lt~l~ls~Nq-lS~lp~~lC~lp-Lkvli~sNNkl 155 (722)
T KOG0532|consen 79 FADLSRNRFSELPEEACAFVSLESLILYHNCI-RTIPEAICNLEALTFLDLSSNQ-LSHLPDGLCDLP-LKVLIVSNNKL 155 (722)
T ss_pred hhhccccccccCchHHHHHHHHHHHHHHhccc-eecchhhhhhhHHHHhhhccch-hhcCChhhhcCc-ceeEEEecCcc
Confidence 34455566666666555555566655555432 3445556666666666666554 233444444443 66666666666
Q ss_pred cccCccccCCCCCcEEeeccCCCCccCCcccCCcCCCCCCCCEEeccCCCCCCcCccCCCCCCCCEEEccCCCCcccchh
Q 002220 806 KELPPSFENLQGLRQLSLIGCSELKCSGWVLPTRISKLSSLERLQLSGCEIKEIPEDIDCLSSLEVLDLSGSKIEILPTS 885 (951)
Q Consensus 806 ~~l~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~l~~l~~~l~~l~~L~~L~L~~n~l~~l~~~ 885 (951)
+.+|..++.++.|..|+.+.|.+.. +|..+.++.+|+.|++..|++..+|..+..++ |..||+++|++..||-.
T Consensus 156 ~~lp~~ig~~~tl~~ld~s~nei~s-----lpsql~~l~slr~l~vrRn~l~~lp~El~~Lp-Li~lDfScNkis~iPv~ 229 (722)
T KOG0532|consen 156 TSLPEEIGLLPTLAHLDVSKNEIQS-----LPSQLGYLTSLRDLNVRRNHLEDLPEELCSLP-LIRLDFSCNKISYLPVD 229 (722)
T ss_pred ccCCcccccchhHHHhhhhhhhhhh-----chHHhhhHHHHHHHHHhhhhhhhCCHHHhCCc-eeeeecccCceeecchh
Confidence 6666666666666666666666655 55566666666666666666666666666443 66677777777777766
Q ss_pred hcCCCCCCEEeeCCCC
Q 002220 886 IGQLSRLRQLNLLDCN 901 (951)
Q Consensus 886 l~~l~~L~~L~L~~~~ 901 (951)
|.++..|++|-|.+|+
T Consensus 230 fr~m~~Lq~l~LenNP 245 (722)
T KOG0532|consen 230 FRKMRHLQVLQLENNP 245 (722)
T ss_pred hhhhhhheeeeeccCC
Confidence 6677777777666544
No 37
>PRK00080 ruvB Holliday junction DNA helicase RuvB; Reviewed
Probab=99.05 E-value=1.7e-09 Score=117.61 Aligned_cols=272 Identities=15% Similarity=0.117 Sum_probs=144.7
Q ss_pred CCCCCCcccchhhHHHHHHhhcc---CCCCcEEEEEEecCCChhHHHHHHHHHHhhccccceeecccccchhcCCCChHH
Q 002220 182 STYSDGFVGLNSRIQKIKSLLCI---GLPDFRTIGIWGMGGIGKTTLAGAVFKLISREFEGKCFMPNVREESENGGGLVY 258 (951)
Q Consensus 182 ~~~~~~~vGr~~~~~~l~~~L~~---~~~~~~vv~I~G~gGiGKTtLA~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~ 258 (951)
|....+|+|+++.++.+..++.. .......+.|+|++|+|||++|+.+++.....+.. .. ... .. .. .
T Consensus 21 P~~~~~~vG~~~~~~~l~~~l~~~~~~~~~~~~~ll~GppG~GKT~la~~ia~~l~~~~~~---~~-~~~-~~---~~-~ 91 (328)
T PRK00080 21 PKSLDEFIGQEKVKENLKIFIEAAKKRGEALDHVLLYGPPGLGKTTLANIIANEMGVNIRI---TS-GPA-LE---KP-G 91 (328)
T ss_pred cCCHHHhcCcHHHHHHHHHHHHHHHhcCCCCCcEEEECCCCccHHHHHHHHHHHhCCCeEE---Ee-ccc-cc---Ch-H
Confidence 34557899999999999888752 23345678899999999999999999977544321 11 000 00 00 0
Q ss_pred HHHHHHHHHhcCcc------ccCCCCChHHHHHHhcCCcEEEEEeCCCChHHHHHHHhccCCCCCCCEEEEEeCCchhhh
Q 002220 259 LRDRVVSEIFQEDI------KIGTPYLPDYIVERLNRMKVLTVLDDVNKVRQLHYLACVLDQFGPGSRIIITTRDKRILD 332 (951)
Q Consensus 259 l~~~il~~l~~~~~------~~~~~~~~~~l~~~l~~~~~LlVlDdv~~~~~~~~l~~~~~~~~~gs~IlvTtR~~~v~~ 332 (951)
....++..+..... ..-.....+.+...+.+.+..+|+|+..+..++.. ...+.+-|..|++...+..
T Consensus 92 ~l~~~l~~l~~~~vl~IDEi~~l~~~~~e~l~~~~e~~~~~~~l~~~~~~~~~~~------~l~~~~li~at~~~~~l~~ 165 (328)
T PRK00080 92 DLAAILTNLEEGDVLFIDEIHRLSPVVEEILYPAMEDFRLDIMIGKGPAARSIRL------DLPPFTLIGATTRAGLLTS 165 (328)
T ss_pred HHHHHHHhcccCCEEEEecHhhcchHHHHHHHHHHHhcceeeeeccCccccceee------cCCCceEEeecCCcccCCH
Confidence 11111111110000 00000000122222222333333333222211110 0122345566777554432
Q ss_pred hc--CCCccceEEcCCCChhhhHHHHhhhhccCCCCChhHHHHHHHHHHHcCCCchHHHHHhhhcCCCCHHHHHHHHHHH
Q 002220 333 DF--GVCDTDIYEVNKLRFHEALVLFSNFAFKENQCPGDLLALLERVLKYANGNPLALRVLGSFFHRKSKSDWEKALENL 410 (951)
Q Consensus 333 ~~--~~~~~~~~~l~~L~~~~a~~Lf~~~~~~~~~~~~~~~~~~~~i~~~~~g~PLal~~~~~~L~~~~~~~w~~~l~~l 410 (951)
.. ... ..+++++++.++..+++.+.+...... -..+.+..|++.|+|.|-.+..+...+. .|.... .-
T Consensus 166 ~L~sRf~--~~~~l~~~~~~e~~~il~~~~~~~~~~--~~~~~~~~ia~~~~G~pR~a~~~l~~~~-----~~a~~~-~~ 235 (328)
T PRK00080 166 PLRDRFG--IVQRLEFYTVEELEKIVKRSARILGVE--IDEEGALEIARRSRGTPRIANRLLRRVR-----DFAQVK-GD 235 (328)
T ss_pred HHHHhcC--eeeecCCCCHHHHHHHHHHHHHHcCCC--cCHHHHHHHHHHcCCCchHHHHHHHHHH-----HHHHHc-CC
Confidence 21 111 468999999999999999887543222 1235688999999999965554444221 111100 00
Q ss_pred hcCCC---cchHHHHHHhhcCCchhhHhhhh-heecccCC-CCHHHHHHHhcCCCC-cccchH-HHHhccCceee
Q 002220 411 NRISD---PDIYDVLKISYNDLRPEEKSMFL-DIACFFAG-EKKDFLTCILDDPNF-PHCGLN-VLIEKSLITMS 478 (951)
Q Consensus 411 ~~~~~---~~i~~~l~~sy~~L~~~~k~~fl-~~a~f~~~-~~~~~l~~~~~~~~~-~~~~l~-~L~~~sLi~~~ 478 (951)
..... ......+...+..|++..+..+. .+..|..+ ...+.+...+..... .+..++ .|++.+||+..
T Consensus 236 ~~I~~~~v~~~l~~~~~~~~~l~~~~~~~l~~~~~~~~~~~~~~~~~a~~lg~~~~~~~~~~e~~Li~~~li~~~ 310 (328)
T PRK00080 236 GVITKEIADKALDMLGVDELGLDEMDRKYLRTIIEKFGGGPVGLDTLAAALGEERDTIEDVYEPYLIQQGFIQRT 310 (328)
T ss_pred CCCCHHHHHHHHHHhCCCcCCCCHHHHHHHHHHHHHcCCCceeHHHHHHHHCCCcchHHHHhhHHHHHcCCcccC
Confidence 00111 12233456667888888888775 55556554 345666666655444 454566 89999999754
No 38
>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]
Probab=99.05 E-value=2e-11 Score=130.73 Aligned_cols=180 Identities=26% Similarity=0.435 Sum_probs=153.3
Q ss_pred CCCCCCcc---ccceeeccccCCCCCccCcccccCCCCcEEecccccccccccccccCCCCCCEEeccCCCCCCccchhc
Q 002220 713 NLTEFPQI---SGKVVKLRLWYTPIEEVPSSIECLTNLETLDLRLCERLKRVSTSICKLKSLGSLLLAFCSNLEGFPEIL 789 (951)
Q Consensus 713 ~l~~l~~~---~~~L~~L~l~~~~l~~lp~~l~~l~~L~~L~Ls~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l 789 (951)
.+..+|.. +-.|+.+.|..|.+..+|..+.++..|++|+|+.|.+ ..+|..++.|+ |+.|.+++|+ ++.+|+.+
T Consensus 86 R~~elp~~~~~f~~Le~liLy~n~~r~ip~~i~~L~~lt~l~ls~Nql-S~lp~~lC~lp-Lkvli~sNNk-l~~lp~~i 162 (722)
T KOG0532|consen 86 RFSELPEEACAFVSLESLILYHNCIRTIPEAICNLEALTFLDLSSNQL-SHLPDGLCDLP-LKVLIVSNNK-LTSLPEEI 162 (722)
T ss_pred ccccCchHHHHHHHHHHHHHHhccceecchhhhhhhHHHHhhhccchh-hcCChhhhcCc-ceeEEEecCc-cccCCccc
Confidence 34555643 3468888999999999999999999999999998864 56777788776 8999999876 67788889
Q ss_pred ccCCCCcEEEcccCCCcccCccccCCCCCcEEeeccCCCCccCCcccCCcCCCCCCCCEEeccCCCCCCcCccCCCCCCC
Q 002220 790 EKMELLETLDLERTGVKELPPSFENLQGLRQLSLIGCSELKCSGWVLPTRISKLSSLERLQLSGCEIKEIPEDIDCLSSL 869 (951)
Q Consensus 790 ~~l~~L~~L~l~~n~i~~l~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~l~~l~~~l~~l~~L 869 (951)
+.++.|..|+.+.|.+..+|..++.+.+|+.|.+..|.... +|..+..+ .|..|++++|++..+|..|..|..|
T Consensus 163 g~~~tl~~ld~s~nei~slpsql~~l~slr~l~vrRn~l~~-----lp~El~~L-pLi~lDfScNkis~iPv~fr~m~~L 236 (722)
T KOG0532|consen 163 GLLPTLAHLDVSKNEIQSLPSQLGYLTSLRDLNVRRNHLED-----LPEELCSL-PLIRLDFSCNKISYLPVDFRKMRHL 236 (722)
T ss_pred ccchhHHHhhhhhhhhhhchHHhhhHHHHHHHHHhhhhhhh-----CCHHHhCC-ceeeeecccCceeecchhhhhhhhh
Confidence 99999999999999999999999999999999999998887 67667644 5999999999999999999999999
Q ss_pred CEEEccCCCCcccchhh---cCCCCCCEEeeCCCC
Q 002220 870 EVLDLSGSKIEILPTSI---GQLSRLRQLNLLDCN 901 (951)
Q Consensus 870 ~~L~L~~n~l~~l~~~l---~~l~~L~~L~L~~~~ 901 (951)
++|-|.+|.+++=|..+ +...--++|++.-|.
T Consensus 237 q~l~LenNPLqSPPAqIC~kGkVHIFKyL~~qA~q 271 (722)
T KOG0532|consen 237 QVLQLENNPLQSPPAQICEKGKVHIFKYLSTQACQ 271 (722)
T ss_pred eeeeeccCCCCCChHHHHhccceeeeeeecchhcc
Confidence 99999999999887554 334446778888874
No 39
>PF05729 NACHT: NACHT domain
Probab=99.03 E-value=1.9e-09 Score=105.30 Aligned_cols=144 Identities=22% Similarity=0.304 Sum_probs=84.9
Q ss_pred EEEEEEecCCChhHHHHHHHHHHhhccc------cceeecccccchhcCCCChHHHHHHHHHHHhcCccccCCCCChHHH
Q 002220 210 RTIGIWGMGGIGKTTLAGAVFKLISREF------EGKCFMPNVREESENGGGLVYLRDRVVSEIFQEDIKIGTPYLPDYI 283 (951)
Q Consensus 210 ~vv~I~G~gGiGKTtLA~~~~~~~~~~f------~~~~~~~~~~~~~~~~~~~~~l~~~il~~l~~~~~~~~~~~~~~~l 283 (951)
|++.|+|.+|+||||+++.++..+.... ...+|+ ..+.... ......+...+............ ..+
T Consensus 1 r~l~I~G~~G~GKStll~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~-~~~~~~l~~~l~~~~~~~~~~~~-----~~~ 73 (166)
T PF05729_consen 1 RVLWISGEPGSGKSTLLRKLAQQLAEEEPPPSKFPYPFFF-SLRDISD-SNNSRSLADLLFDQLPESIAPIE-----ELL 73 (166)
T ss_pred CEEEEECCCCCChHHHHHHHHHHHHhcCcccccceEEEEE-eehhhhh-ccccchHHHHHHHhhccchhhhH-----HHH
Confidence 5899999999999999999998765443 233343 3333222 11112333333333322111110 112
Q ss_pred H-HHhcCCcEEEEEeCCCChHH---------HHHHHh-ccCC-CCCCCEEEEEeCCchhhhhcC-CCccceEEcCCCChh
Q 002220 284 V-ERLNRMKVLTVLDDVNKVRQ---------LHYLAC-VLDQ-FGPGSRIIITTRDKRILDDFG-VCDTDIYEVNKLRFH 350 (951)
Q Consensus 284 ~-~~l~~~~~LlVlDdv~~~~~---------~~~l~~-~~~~-~~~gs~IlvTtR~~~v~~~~~-~~~~~~~~l~~L~~~ 350 (951)
. -..+.+++++|+|++++... +..+.. .+.. ..++++|+||+|......... ......+++.+|+++
T Consensus 74 ~~~~~~~~~~llilDglDE~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~liit~r~~~~~~~~~~~~~~~~~~l~~~~~~ 153 (166)
T PF05729_consen 74 QELLEKNKRVLLILDGLDELEEQDQSQERQRLLDLLSQLLPQALPPGVKLIITSRPRAFPDLRRRLKQAQILELEPFSEE 153 (166)
T ss_pred HHHHHcCCceEEEEechHhcccchhhhHHHHHHHHHHHHhhhccCCCCeEEEEEcCChHHHHHHhcCCCcEEEECCCCHH
Confidence 1 22357899999999964432 222222 2221 257899999999887622111 111268999999999
Q ss_pred hhHHHHhhhh
Q 002220 351 EALVLFSNFA 360 (951)
Q Consensus 351 ~a~~Lf~~~~ 360 (951)
+..+++.++.
T Consensus 154 ~~~~~~~~~f 163 (166)
T PF05729_consen 154 DIKQYLRKYF 163 (166)
T ss_pred HHHHHHHHHh
Confidence 9999997764
No 40
>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]
Probab=99.02 E-value=4.4e-10 Score=126.68 Aligned_cols=177 Identities=32% Similarity=0.523 Sum_probs=127.7
Q ss_pred ceeeccccCCCCCccCcccccCC-CCcEEecccccccccccccccCCCCCCEEeccCCCCCCccchhcccCCCCcEEEcc
Q 002220 723 KVVKLRLWYTPIEEVPSSIECLT-NLETLDLRLCERLKRVSTSICKLKSLGSLLLAFCSNLEGFPEILEKMELLETLDLE 801 (951)
Q Consensus 723 ~L~~L~l~~~~l~~lp~~l~~l~-~L~~L~Ls~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~ 801 (951)
.++.|++.+|.+..+|.....+. +|+.|++++|.+. .+|..+..+++|+.|++++|.. ..+|...+.+++|+.|+++
T Consensus 117 ~l~~L~l~~n~i~~i~~~~~~~~~nL~~L~l~~N~i~-~l~~~~~~l~~L~~L~l~~N~l-~~l~~~~~~~~~L~~L~ls 194 (394)
T COG4886 117 NLTSLDLDNNNITDIPPLIGLLKSNLKELDLSDNKIE-SLPSPLRNLPNLKNLDLSFNDL-SDLPKLLSNLSNLNNLDLS 194 (394)
T ss_pred ceeEEecCCcccccCccccccchhhcccccccccchh-hhhhhhhccccccccccCCchh-hhhhhhhhhhhhhhheecc
Confidence 56677777778888877777774 7888888877543 3334567778888888887764 4455544577788888888
Q ss_pred cCCCcccCccccCCCCCcEEeeccCCCCccCCcccCCcCCCCCCCCEEeccCCCCCCcCccCCCCCCCCEEEccCCCCcc
Q 002220 802 RTGVKELPPSFENLQGLRQLSLIGCSELKCSGWVLPTRISKLSSLERLQLSGCEIKEIPEDIDCLSSLEVLDLSGSKIEI 881 (951)
Q Consensus 802 ~n~i~~l~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~l~~l~~~l~~l~~L~~L~L~~n~l~~ 881 (951)
+|.+..+|.....+..|++|.+++|.... .+..+..+.++..|.+.+|++..++..+..+++|+.|++++|.++.
T Consensus 195 ~N~i~~l~~~~~~~~~L~~l~~~~N~~~~-----~~~~~~~~~~l~~l~l~~n~~~~~~~~~~~l~~l~~L~~s~n~i~~ 269 (394)
T COG4886 195 GNKISDLPPEIELLSALEELDLSNNSIIE-----LLSSLSNLKNLSGLELSNNKLEDLPESIGNLSNLETLDLSNNQISS 269 (394)
T ss_pred CCccccCchhhhhhhhhhhhhhcCCccee-----cchhhhhcccccccccCCceeeeccchhccccccceeccccccccc
Confidence 88888887766566668888888776443 4555677777777777787777777777778888888888888887
Q ss_pred cchhhcCCCCCCEEeeCCCCCCCcCC
Q 002220 882 LPTSIGQLSRLRQLNLLDCNMLQSIP 907 (951)
Q Consensus 882 l~~~l~~l~~L~~L~L~~~~~l~~lp 907 (951)
++. +..+.+|+.|+++++......|
T Consensus 270 i~~-~~~~~~l~~L~~s~n~~~~~~~ 294 (394)
T COG4886 270 ISS-LGSLTNLRELDLSGNSLSNALP 294 (394)
T ss_pred ccc-ccccCccCEEeccCccccccch
Confidence 775 7777888888888766554433
No 41
>TIGR02928 orc1/cdc6 family replication initiation protein. Members of this protein family are found exclusively in the archaea. This set of DNA binding proteins shows homology to the origin recognition complex subunit 1/cell division control protein 6 family in eukaryotes. Several members may be found in genome and interact with each other.
Probab=99.00 E-value=3.3e-08 Score=110.10 Aligned_cols=248 Identities=16% Similarity=0.119 Sum_probs=140.1
Q ss_pred CCCCCCcccchhhHHHHHHhhcc--CCCCcEEEEEEecCCChhHHHHHHHHHHhhcccc------ceeecccccchhcCC
Q 002220 182 STYSDGFVGLNSRIQKIKSLLCI--GLPDFRTIGIWGMGGIGKTTLAGAVFKLISREFE------GKCFMPNVREESENG 253 (951)
Q Consensus 182 ~~~~~~~vGr~~~~~~l~~~L~~--~~~~~~vv~I~G~gGiGKTtLA~~~~~~~~~~f~------~~~~~~~~~~~~~~~ 253 (951)
...++.++||++++++|...+.. .......+.|+|++|+|||++++++++.+..... ..+|+.+.. .
T Consensus 11 ~~~p~~l~gRe~e~~~l~~~l~~~~~~~~~~~i~I~G~~GtGKT~l~~~~~~~l~~~~~~~~~~~~~v~in~~~-----~ 85 (365)
T TIGR02928 11 DYVPDRIVHRDEQIEELAKALRPILRGSRPSNVFIYGKTGTGKTAVTKYVMKELEEAAEDRDVRVVTVYVNCQI-----L 85 (365)
T ss_pred CCCCCCCCCcHHHHHHHHHHHHHHHcCCCCCcEEEECCCCCCHHHHHHHHHHHHHHHhhccCCceEEEEEECCC-----C
Confidence 34556899999999999998863 1234467899999999999999999986643322 234443221 2
Q ss_pred CChHHHHHHHHHHHhc--CccccCCC--CC-hHHHHHHh--cCCcEEEEEeCCCChH-----HHHHHHhcc-CCCC--CC
Q 002220 254 GGLVYLRDRVVSEIFQ--EDIKIGTP--YL-PDYIVERL--NRMKVLTVLDDVNKVR-----QLHYLACVL-DQFG--PG 318 (951)
Q Consensus 254 ~~~~~l~~~il~~l~~--~~~~~~~~--~~-~~~l~~~l--~~~~~LlVlDdv~~~~-----~~~~l~~~~-~~~~--~g 318 (951)
.....+...++.++.. ........ .. ...+.+.+ .+++++||||+++... .+..+.... .... ..
T Consensus 86 ~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~vlvIDE~d~L~~~~~~~L~~l~~~~~~~~~~~~~ 165 (365)
T TIGR02928 86 DTLYQVLVELANQLRGSGEEVPTTGLSTSEVFRRLYKELNERGDSLIIVLDEIDYLVGDDDDLLYQLSRARSNGDLDNAK 165 (365)
T ss_pred CCHHHHHHHHHHHHhhcCCCCCCCCCCHHHHHHHHHHHHHhcCCeEEEEECchhhhccCCcHHHHhHhccccccCCCCCe
Confidence 2345667777777742 11111110 11 13344444 3567899999997652 122332221 0111 23
Q ss_pred CEEEEEeCCchhhhhcC-----CCccceEEcCCCChhhhHHHHhhhhc---cCCCCChhHHHHHHHHHHHcCCCchH-HH
Q 002220 319 SRIIITTRDKRILDDFG-----VCDTDIYEVNKLRFHEALVLFSNFAF---KENQCPGDLLALLERVLKYANGNPLA-LR 389 (951)
Q Consensus 319 s~IlvTtR~~~v~~~~~-----~~~~~~~~l~~L~~~~a~~Lf~~~~~---~~~~~~~~~~~~~~~i~~~~~g~PLa-l~ 389 (951)
..+|.+|.......... ......+.+++++.+|..+++..++- ......++..+.+.+++....|.|-. +.
T Consensus 166 v~lI~i~n~~~~~~~l~~~~~s~~~~~~i~f~p~~~~e~~~il~~r~~~~~~~~~~~~~~l~~i~~~~~~~~Gd~R~al~ 245 (365)
T TIGR02928 166 VGVIGISNDLKFRENLDPRVKSSLCEEEIIFPPYDAEELRDILENRAEKAFYDGVLDDGVIPLCAALAAQEHGDARKAID 245 (365)
T ss_pred EEEEEEECCcchHhhcCHHHhccCCcceeeeCCCCHHHHHHHHHHHHHhhccCCCCChhHHHHHHHHHHHhcCCHHHHHH
Confidence 34555555443321110 00115689999999999999988763 22222333334555677777788743 33
Q ss_pred HHhhhc----C-C---CCHHHHHHHHHHHhcCCCcchHHHHHHhhcCCchhhHhhhhhee
Q 002220 390 VLGSFF----H-R---KSKSDWEKALENLNRISDPDIYDVLKISYNDLRPEEKSMFLDIA 441 (951)
Q Consensus 390 ~~~~~L----~-~---~~~~~w~~~l~~l~~~~~~~i~~~l~~sy~~L~~~~k~~fl~~a 441 (951)
++-... . + -+.+....+...+. .....-+...||.+++..+..++
T Consensus 246 ~l~~a~~~a~~~~~~~it~~~v~~a~~~~~-------~~~~~~~i~~l~~~~~~~l~ai~ 298 (365)
T TIGR02928 246 LLRVAGEIAEREGAERVTEDHVEKAQEKIE-------KDRLLELIRGLPTHSKLVLLAIA 298 (365)
T ss_pred HHHHHHHHHHHcCCCCCCHHHHHHHHHHHH-------HHHHHHHHHcCCHHHHHHHHHHH
Confidence 322111 1 1 24555555555441 23344566788888887666554
No 42
>TIGR03015 pepcterm_ATPase putative secretion ATPase, PEP-CTERM locus subfamily. Members of this protein are marked as probable ATPases by the nucleotide binding P-loop motif GXXGXGKTT, a motif DEAQ similar to the DEAD/H box of helicases, and extensive homology to ATPases of MSHA-type pilus systems and to GspA proteins associated with type II protein secretion systems.
Probab=99.00 E-value=1.4e-08 Score=107.85 Aligned_cols=180 Identities=16% Similarity=0.095 Sum_probs=103.9
Q ss_pred cEEEEEEecCCChhHHHHHHHHHHhhccccceeecccccchhcCCCChHHHHHHHHHHHhcCccccCCCCChHHHHHH--
Q 002220 209 FRTIGIWGMGGIGKTTLAGAVFKLISREFEGKCFMPNVREESENGGGLVYLRDRVVSEIFQEDIKIGTPYLPDYIVER-- 286 (951)
Q Consensus 209 ~~vv~I~G~gGiGKTtLA~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~l~~~il~~l~~~~~~~~~~~~~~~l~~~-- 286 (951)
..++.|+|++|+||||+++.+++.....=-..+++... ......+...+...++..............+.+.
T Consensus 43 ~~~~~l~G~~G~GKTtl~~~l~~~l~~~~~~~~~~~~~------~~~~~~~l~~i~~~lG~~~~~~~~~~~~~~l~~~l~ 116 (269)
T TIGR03015 43 EGFILITGEVGAGKTTLIRNLLKRLDQERVVAAKLVNT------RVDAEDLLRMVAADFGLETEGRDKAALLRELEDFLI 116 (269)
T ss_pred CCEEEEEcCCCCCHHHHHHHHHHhcCCCCeEEeeeeCC------CCCHHHHHHHHHHHcCCCCCCCCHHHHHHHHHHHHH
Confidence 46899999999999999999998765321112222111 2234456666666554332111111111233322
Q ss_pred ---hcCCcEEEEEeCCCChH--HHHHHHhccC---CCCCCCEEEEEeCCchhhhhcC--------CCccceEEcCCCChh
Q 002220 287 ---LNRMKVLTVLDDVNKVR--QLHYLACVLD---QFGPGSRIIITTRDKRILDDFG--------VCDTDIYEVNKLRFH 350 (951)
Q Consensus 287 ---l~~~~~LlVlDdv~~~~--~~~~l~~~~~---~~~~gs~IlvTtR~~~v~~~~~--------~~~~~~~~l~~L~~~ 350 (951)
..+++.++|+||++... .++.+..... .......|++|.... ...... -.....+.+++++.+
T Consensus 117 ~~~~~~~~~vliiDe~~~l~~~~~~~l~~l~~~~~~~~~~~~vvl~g~~~-~~~~l~~~~~~~l~~r~~~~~~l~~l~~~ 195 (269)
T TIGR03015 117 EQFAAGKRALLVVDEAQNLTPELLEELRMLSNFQTDNAKLLQIFLVGQPE-FRETLQSPQLQQLRQRIIASCHLGPLDRE 195 (269)
T ss_pred HHHhCCCCeEEEEECcccCCHHHHHHHHHHhCcccCCCCeEEEEEcCCHH-HHHHHcCchhHHHHhheeeeeeCCCCCHH
Confidence 25778999999998653 3444432211 112233445555432 211111 000146889999999
Q ss_pred hhHHHHhhhhccCC--CCChhHHHHHHHHHHHcCCCchHHHHHhhhc
Q 002220 351 EALVLFSNFAFKEN--QCPGDLLALLERVLKYANGNPLALRVLGSFF 395 (951)
Q Consensus 351 ~a~~Lf~~~~~~~~--~~~~~~~~~~~~i~~~~~g~PLal~~~~~~L 395 (951)
|..+++...+.... ....-..+..+.|++.++|.|..+..++..+
T Consensus 196 e~~~~l~~~l~~~g~~~~~~~~~~~~~~i~~~s~G~p~~i~~l~~~~ 242 (269)
T TIGR03015 196 ETREYIEHRLERAGNRDAPVFSEGAFDAIHRFSRGIPRLINILCDRL 242 (269)
T ss_pred HHHHHHHHHHHHcCCCCCCCcCHHHHHHHHHHcCCcccHHHHHHHHH
Confidence 99999987663211 1111224678899999999999999888765
No 43
>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]
Probab=98.98 E-value=9.5e-11 Score=121.95 Aligned_cols=180 Identities=24% Similarity=0.232 Sum_probs=118.5
Q ss_pred cceeeccccCCCCCcc---CcccccCCCCcEEeccccccccccccc-ccCCCCCCEEeccCCCCCCc-cchhcccCCCCc
Q 002220 722 GKVVKLRLWYTPIEEV---PSSIECLTNLETLDLRLCERLKRVSTS-ICKLKSLGSLLLAFCSNLEG-FPEILEKMELLE 796 (951)
Q Consensus 722 ~~L~~L~l~~~~l~~l---p~~l~~l~~L~~L~Ls~~~~~~~~~~~-~~~l~~L~~L~l~~~~~~~~-~~~~l~~l~~L~ 796 (951)
.+++.|+|+.|-+... -.-...+++|+.|+|+.|.+..-..+. -..+++|+.|.++.|..... +...+..+|+|+
T Consensus 146 ~~v~~LdLS~NL~~nw~~v~~i~eqLp~Le~LNls~Nrl~~~~~s~~~~~l~~lK~L~l~~CGls~k~V~~~~~~fPsl~ 225 (505)
T KOG3207|consen 146 PNVRDLDLSRNLFHNWFPVLKIAEQLPSLENLNLSSNRLSNFISSNTTLLLSHLKQLVLNSCGLSWKDVQWILLTFPSLE 225 (505)
T ss_pred CcceeecchhhhHHhHHHHHHHHHhcccchhcccccccccCCccccchhhhhhhheEEeccCCCCHHHHHHHHHhCCcHH
Confidence 3455556665555432 233567888888888887654322211 12567788888888875432 344566788888
Q ss_pred EEEcccCC-CcccCccccCCCCCcEEeeccCCCCccCCcccCCcCCCCCCCCEEeccCCCCCC--cCcc-----CCCCCC
Q 002220 797 TLDLERTG-VKELPPSFENLQGLRQLSLIGCSELKCSGWVLPTRISKLSSLERLQLSGCEIKE--IPED-----IDCLSS 868 (951)
Q Consensus 797 ~L~l~~n~-i~~l~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~l~~--l~~~-----l~~l~~ 868 (951)
.|++.+|. +..-......+..|+.|+|++|....+.. -.....++.|+.|+++.|.+.+ +|+. ...+++
T Consensus 226 ~L~L~~N~~~~~~~~~~~i~~~L~~LdLs~N~li~~~~---~~~~~~l~~L~~Lnls~tgi~si~~~d~~s~~kt~~f~k 302 (505)
T KOG3207|consen 226 VLYLEANEIILIKATSTKILQTLQELDLSNNNLIDFDQ---GYKVGTLPGLNQLNLSSTGIASIAEPDVESLDKTHTFPK 302 (505)
T ss_pred HhhhhcccccceecchhhhhhHHhhccccCCccccccc---ccccccccchhhhhccccCcchhcCCCccchhhhccccc
Confidence 88888884 32222234556788888888888776421 2346678888888888888876 3443 356788
Q ss_pred CCEEEccCCCCcccc--hhhcCCCCCCEEeeCCCCCCC
Q 002220 869 LEVLDLSGSKIEILP--TSIGQLSRLRQLNLLDCNMLQ 904 (951)
Q Consensus 869 L~~L~L~~n~l~~l~--~~l~~l~~L~~L~L~~~~~l~ 904 (951)
|++|+++.|++..++ ..+..+++|+.|.+..|+.-+
T Consensus 303 L~~L~i~~N~I~~w~sl~~l~~l~nlk~l~~~~n~ln~ 340 (505)
T KOG3207|consen 303 LEYLNISENNIRDWRSLNHLRTLENLKHLRITLNYLNK 340 (505)
T ss_pred ceeeecccCccccccccchhhccchhhhhhcccccccc
Confidence 899999888887666 455667788888776655443
No 44
>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]
Probab=98.98 E-value=2.9e-11 Score=122.47 Aligned_cols=180 Identities=23% Similarity=0.316 Sum_probs=125.1
Q ss_pred ceeeccccCCCCC-----ccCcccccCCCCcEEeccccccccccc-------------ccccCCCCCCEEeccCCCCCCc
Q 002220 723 KVVKLRLWYTPIE-----EVPSSIECLTNLETLDLRLCERLKRVS-------------TSICKLKSLGSLLLAFCSNLEG 784 (951)
Q Consensus 723 ~L~~L~l~~~~l~-----~lp~~l~~l~~L~~L~Ls~~~~~~~~~-------------~~~~~l~~L~~L~l~~~~~~~~ 784 (951)
.|++|+|+.|.+. .+-.-+.++..|++|.|.+|.+...-. .-+.+-+.|+++...+|+.-..
T Consensus 93 ~L~~ldLSDNA~G~~g~~~l~~ll~s~~~L~eL~L~N~Glg~~ag~~l~~al~~l~~~kk~~~~~~Lrv~i~~rNrlen~ 172 (382)
T KOG1909|consen 93 KLQKLDLSDNAFGPKGIRGLEELLSSCTDLEELYLNNCGLGPEAGGRLGRALFELAVNKKAASKPKLRVFICGRNRLENG 172 (382)
T ss_pred ceeEeeccccccCccchHHHHHHHHhccCHHHHhhhcCCCChhHHHHHHHHHHHHHHHhccCCCcceEEEEeeccccccc
Confidence 3444444445443 122235567788888888776543221 1234557788888888874322
Q ss_pred ----cchhcccCCCCcEEEcccCCCcc-----cCccccCCCCCcEEeeccCCCCccCCcccCCcCCCCCCCCEEeccCCC
Q 002220 785 ----FPEILEKMELLETLDLERTGVKE-----LPPSFENLQGLRQLSLIGCSELKCSGWVLPTRISKLSSLERLQLSGCE 855 (951)
Q Consensus 785 ----~~~~l~~l~~L~~L~l~~n~i~~-----l~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~ 855 (951)
+...|+..+.|+.+.+..|.|.. +...+..+++|+.|+|.+|....-.+..+...++.+++|+.|++++|.
T Consensus 173 ga~~~A~~~~~~~~leevr~~qN~I~~eG~~al~eal~~~~~LevLdl~DNtft~egs~~LakaL~s~~~L~El~l~dcl 252 (382)
T KOG1909|consen 173 GATALAEAFQSHPTLEEVRLSQNGIRPEGVTALAEALEHCPHLEVLDLRDNTFTLEGSVALAKALSSWPHLRELNLGDCL 252 (382)
T ss_pred cHHHHHHHHHhccccceEEEecccccCchhHHHHHHHHhCCcceeeecccchhhhHHHHHHHHHhcccchheeecccccc
Confidence 44567888999999999988862 234578899999999999887765544556667888899999999998
Q ss_pred CCC-----cCccC-CCCCCCCEEEccCCCCc-----ccchhhcCCCCCCEEeeCCCCC
Q 002220 856 IKE-----IPEDI-DCLSSLEVLDLSGSKIE-----ILPTSIGQLSRLRQLNLLDCNM 902 (951)
Q Consensus 856 l~~-----l~~~l-~~l~~L~~L~L~~n~l~-----~l~~~l~~l~~L~~L~L~~~~~ 902 (951)
+.. +...+ ...|+|+.|.+.+|.|+ .+-..+...|.|..|+|++|..
T Consensus 253 l~~~Ga~a~~~al~~~~p~L~vl~l~gNeIt~da~~~la~~~~ek~dL~kLnLngN~l 310 (382)
T KOG1909|consen 253 LENEGAIAFVDALKESAPSLEVLELAGNEITRDAALALAACMAEKPDLEKLNLNGNRL 310 (382)
T ss_pred cccccHHHHHHHHhccCCCCceeccCcchhHHHHHHHHHHHHhcchhhHHhcCCcccc
Confidence 884 22223 44789999999999887 2334566788999999999865
No 45
>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]
Probab=98.96 E-value=1.7e-10 Score=113.78 Aligned_cols=105 Identities=26% Similarity=0.280 Sum_probs=94.4
Q ss_pred ccCCCCcEEEcccCCCcccCccccCCCCCcEEeeccCCCCccCCcccCCcCCCCCCCCEEeccCCCCCCcCccCCCCCCC
Q 002220 790 EKMELLETLDLERTGVKELPPSFENLQGLRQLSLIGCSELKCSGWVLPTRISKLSSLERLQLSGCEIKEIPEDIDCLSSL 869 (951)
Q Consensus 790 ~~l~~L~~L~l~~n~i~~l~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~l~~l~~~l~~l~~L 869 (951)
..-+.|+++++++|.|+++..+..-.|.++.|+++.|.+... ..+..+++|+.|+|++|.++++..|-..+.+.
T Consensus 281 dTWq~LtelDLS~N~I~~iDESvKL~Pkir~L~lS~N~i~~v------~nLa~L~~L~~LDLS~N~Ls~~~Gwh~KLGNI 354 (490)
T KOG1259|consen 281 DTWQELTELDLSGNLITQIDESVKLAPKLRRLILSQNRIRTV------QNLAELPQLQLLDLSGNLLAECVGWHLKLGNI 354 (490)
T ss_pred chHhhhhhccccccchhhhhhhhhhccceeEEeccccceeee------hhhhhcccceEeecccchhHhhhhhHhhhcCE
Confidence 344679999999999999999999999999999999998863 23778999999999999999988888889999
Q ss_pred CEEEccCCCCcccchhhcCCCCCCEEeeCCCC
Q 002220 870 EVLDLSGSKIEILPTSIGQLSRLRQLNLLDCN 901 (951)
Q Consensus 870 ~~L~L~~n~l~~l~~~l~~l~~L~~L~L~~~~ 901 (951)
++|.|++|.|+.+. +++.+.+|..|++++|+
T Consensus 355 KtL~La~N~iE~LS-GL~KLYSLvnLDl~~N~ 385 (490)
T KOG1259|consen 355 KTLKLAQNKIETLS-GLRKLYSLVNLDLSSNQ 385 (490)
T ss_pred eeeehhhhhHhhhh-hhHhhhhheeccccccc
Confidence 99999999999986 88999999999999975
No 46
>COG3899 Predicted ATPase [General function prediction only]
Probab=98.94 E-value=1.6e-08 Score=121.83 Aligned_cols=308 Identities=14% Similarity=0.131 Sum_probs=177.7
Q ss_pred CcccchhhHHHHHHhhccC-CCCcEEEEEEecCCChhHHHHHHHHHHhhccccce---------------eecccccchh
Q 002220 187 GFVGLNSRIQKIKSLLCIG-LPDFRTIGIWGMGGIGKTTLAGAVFKLISREFEGK---------------CFMPNVREES 250 (951)
Q Consensus 187 ~~vGr~~~~~~l~~~L~~~-~~~~~vv~I~G~gGiGKTtLA~~~~~~~~~~f~~~---------------~~~~~~~~~~ 250 (951)
.++||+.+++.|...+..- .....++.+.|.+|||||+++++|...+.+.+... .|+..+++..
T Consensus 1 ~l~GRe~ev~~Ll~~f~~v~~g~~~~~lv~G~sGIGKsalv~ev~~~i~~~~~~~i~~~f~q~~~~ipl~~lvq~~r~l~ 80 (849)
T COG3899 1 PLYGRETELAQLLAAFDRVSKGRGEVVLVAGESGIGKSALVNEVHKPITQQRGYFIKGKFDQFERNIPLSPLVQAFRDLM 80 (849)
T ss_pred CCCchHhHHHHHHHHHHHHhCCCeEEEEEeecCCCcHHHHHHHHHHHHhccceeeeHhhcccccCCCchHHHHHHHHHHH
Confidence 3789999999999888633 34457999999999999999999998765542211 1111111110
Q ss_pred c-----CCCChHHHHHHHHHHHhcCccc-----------------c---CCCCCh--------HHHHHHh-cCCcEEEEE
Q 002220 251 E-----NGGGLVYLRDRVVSEIFQEDIK-----------------I---GTPYLP--------DYIVERL-NRMKVLTVL 296 (951)
Q Consensus 251 ~-----~~~~~~~l~~~il~~l~~~~~~-----------------~---~~~~~~--------~~l~~~l-~~~~~LlVl 296 (951)
. ...........++..++..... . ...... ..+.... +.++.++|+
T Consensus 81 ~~ll~~~~~~~~~~~~~il~~~g~~~~~~~~vip~L~~i~g~~~~~~el~~~~~~~r~n~~~~~~i~~~~~~~~plVi~l 160 (849)
T COG3899 81 GQLLSESDTRILSWRARLLAALGENGQVIIDVIPELELIIGKRPPALELSPTAAQNRFNLAFLRFIQVFTAEEHPLVIVL 160 (849)
T ss_pred HHHhhccchHHHHHHHHHHHHhcccchhHHhhhHHHHhhcCCCcchhhcccchhHHHHHHHHHHHHHHHHhccCCeEEEE
Confidence 0 0011111122222222211110 0 000000 1111112 356999999
Q ss_pred eCC-CC-hHH---HHHHHhccC--C-CCCCCEEEEEeCCchhhhhcCCCccceEEcCCCChhhhHHHHhhhhccCCCCCh
Q 002220 297 DDV-NK-VRQ---LHYLACVLD--Q-FGPGSRIIITTRDKRILDDFGVCDTDIYEVNKLRFHEALVLFSNFAFKENQCPG 368 (951)
Q Consensus 297 Ddv-~~-~~~---~~~l~~~~~--~-~~~gs~IlvTtR~~~v~~~~~~~~~~~~~l~~L~~~~a~~Lf~~~~~~~~~~~~ 368 (951)
||+ |- ... ++.++.... . .....-.+.|.+..--.-.........+.+.||+..+...+...........
T Consensus 161 eDlhWaD~~SL~lL~~lm~~~~~~~~~~n~v~~~h~~~~~~~~~~~~~~~i~~I~L~PL~~~d~~~lV~~~l~~~~~~-- 238 (849)
T COG3899 161 EDLHWADSASLKLLQLLMDRIAIGAYRDNEVLLLHPLRPTLGEILKSATNITTITLAPLSRADTNQLVAATLGCTKLL-- 238 (849)
T ss_pred ecccccChhHHHHHHHHHHhcchhhhhccccccCCCccchhhHHhhcCCceeEEecCcCchhhHHHHHHHHhCCcccc--
Confidence 999 42 222 333333322 0 0011122333333311011111223789999999999999998876432222
Q ss_pred hHHHHHHHHHHHcCCCchHHHHHhhhcCCC-------CHHHHHHHHHHHhcCCC-cchHHHHHHhhcCCchhhHhhhhhe
Q 002220 369 DLLALLERVLKYANGNPLALRVLGSFFHRK-------SKSDWEKALENLNRISD-PDIYDVLKISYNDLRPEEKSMFLDI 440 (951)
Q Consensus 369 ~~~~~~~~i~~~~~g~PLal~~~~~~L~~~-------~~~~w~~~l~~l~~~~~-~~i~~~l~~sy~~L~~~~k~~fl~~ 440 (951)
..+..+.|+++.+|+|+.+..+-..+... +...|..-...+...+. +.+...+..-.+.||...++.+...
T Consensus 239 -~~p~~~~i~~kt~GnPfFi~e~lk~l~~~~~i~f~~~~~~w~~~~~~i~~~~~~~~vv~~l~~rl~kL~~~t~~Vl~~A 317 (849)
T COG3899 239 -PAPLLELIFEKTKGNPFFIEEFLKALYEEGLLVFNFDTGAWQCSIASLGILATTDAVVEFLAARLQKLPGTTREVLKAA 317 (849)
T ss_pred -cchHHHHHHHHhcCCCccHHHHHHHHHhCCeeEecCCCcceeccHHhcCCchhhHHHHHHHHHHHhcCCHHHHHHHHHH
Confidence 23568899999999999999998887653 34455555544443322 2355568888999999999999999
Q ss_pred ecccCCCCHHHHHHHhcCCCC-cccchHHHHhccCceee---------CC---eEEccHHHHHHHHHHHh
Q 002220 441 ACFFAGEKKDFLTCILDDPNF-PHCGLNVLIEKSLITMS---------GY---DIRMHDLLQEMGREIVR 497 (951)
Q Consensus 441 a~f~~~~~~~~l~~~~~~~~~-~~~~l~~L~~~sLi~~~---------~~---~~~mH~lv~~~~~~~~~ 497 (951)
||+...++.+.+..++..... ...++......++|.+. .. +-..|+.+|+.|....-
T Consensus 318 A~iG~~F~l~~La~l~~~~~~~~a~~l~~al~e~lI~~~~~~yr~~~~~~~~~Y~F~H~~vqqaaY~~i~ 387 (849)
T COG3899 318 ACIGNRFDLDTLAALAEDSPALEAAALLDALQEGLILPLSETYRFGSNVDIATYKFLHDRVQQAAYNLIP 387 (849)
T ss_pred HHhCccCCHHHHHHHHhhchHHHHHHHHHHhHhhceeccccccccccccchhhHHhhHHHHHHHHhccCc
Confidence 999999998888888765443 22223333334444431 11 22678888888876543
No 47
>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]
Probab=98.93 E-value=1.6e-09 Score=122.03 Aligned_cols=153 Identities=33% Similarity=0.449 Sum_probs=116.3
Q ss_pred ceeeccccCCCCCccCcccccCCCCcEEecccccccccccccccCCCCCCEEeccCCCCCCccchhcccCCCCcEEEccc
Q 002220 723 KVVKLRLWYTPIEEVPSSIECLTNLETLDLRLCERLKRVSTSICKLKSLGSLLLAFCSNLEGFPEILEKMELLETLDLER 802 (951)
Q Consensus 723 ~L~~L~l~~~~l~~lp~~l~~l~~L~~L~Ls~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~ 802 (951)
+|+.|++++|.+..+|..++.+++|+.|++++|++.. ++...+.+++|+.|++++|. +..+|...+.+..|++|.+++
T Consensus 141 nL~~L~l~~N~i~~l~~~~~~l~~L~~L~l~~N~l~~-l~~~~~~~~~L~~L~ls~N~-i~~l~~~~~~~~~L~~l~~~~ 218 (394)
T COG4886 141 NLKELDLSDNKIESLPSPLRNLPNLKNLDLSFNDLSD-LPKLLSNLSNLNNLDLSGNK-ISDLPPEIELLSALEELDLSN 218 (394)
T ss_pred hcccccccccchhhhhhhhhccccccccccCCchhhh-hhhhhhhhhhhhheeccCCc-cccCchhhhhhhhhhhhhhcC
Confidence 5666777778888887778888888888888876543 44444477888888888876 455665555666788888888
Q ss_pred CCCcccCccccCCCCCcEEeeccCCCCccCCcccCCcCCCCCCCCEEeccCCCCCCcCccCCCCCCCCEEEccCCCCccc
Q 002220 803 TGVKELPPSFENLQGLRQLSLIGCSELKCSGWVLPTRISKLSSLERLQLSGCEIKEIPEDIDCLSSLEVLDLSGSKIEIL 882 (951)
Q Consensus 803 n~i~~l~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~l~~l~~~l~~l~~L~~L~L~~n~l~~l 882 (951)
|.+...+..+..+.++..|.+.+|.... ++..+..+++|+.|++++|.++.++. +..+.+|+.|++++|.+..+
T Consensus 219 N~~~~~~~~~~~~~~l~~l~l~~n~~~~-----~~~~~~~l~~l~~L~~s~n~i~~i~~-~~~~~~l~~L~~s~n~~~~~ 292 (394)
T COG4886 219 NSIIELLSSLSNLKNLSGLELSNNKLED-----LPESIGNLSNLETLDLSNNQISSISS-LGSLTNLRELDLSGNSLSNA 292 (394)
T ss_pred CcceecchhhhhcccccccccCCceeee-----ccchhccccccceecccccccccccc-ccccCccCEEeccCcccccc
Confidence 8777777777888888888877776654 35667788888999999988888877 78888899999988877655
Q ss_pred c
Q 002220 883 P 883 (951)
Q Consensus 883 ~ 883 (951)
+
T Consensus 293 ~ 293 (394)
T COG4886 293 L 293 (394)
T ss_pred c
Confidence 4
No 48
>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A.
Probab=98.92 E-value=9.5e-10 Score=105.25 Aligned_cols=109 Identities=27% Similarity=0.334 Sum_probs=37.1
Q ss_pred cccCCCCcEEEcccCCCcccCcccc-CCCCCcEEeeccCCCCccCCcccCCcCCCCCCCCEEeccCCCCCCcCccC-CCC
Q 002220 789 LEKMELLETLDLERTGVKELPPSFE-NLQGLRQLSLIGCSELKCSGWVLPTRISKLSSLERLQLSGCEIKEIPEDI-DCL 866 (951)
Q Consensus 789 l~~l~~L~~L~l~~n~i~~l~~~~~-~l~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~l~~l~~~l-~~l 866 (951)
+.++.++++|+|.+|.|+.+. .++ .+.+|+.|++++|.+.... .+..++.|+.|++++|.++++.+.+ ..+
T Consensus 15 ~~n~~~~~~L~L~~n~I~~Ie-~L~~~l~~L~~L~Ls~N~I~~l~------~l~~L~~L~~L~L~~N~I~~i~~~l~~~l 87 (175)
T PF14580_consen 15 YNNPVKLRELNLRGNQISTIE-NLGATLDKLEVLDLSNNQITKLE------GLPGLPRLKTLDLSNNRISSISEGLDKNL 87 (175)
T ss_dssp ----------------------S--TT-TT--EEE-TTS--S--T------T----TT--EEE--SS---S-CHHHHHH-
T ss_pred ccccccccccccccccccccc-chhhhhcCCCEEECCCCCCcccc------CccChhhhhhcccCCCCCCccccchHHhC
Confidence 344556777777777777663 344 4677788888887777632 2556778888888888888776544 357
Q ss_pred CCCCEEEccCCCCcccc--hhhcCCCCCCEEeeCCCCCCC
Q 002220 867 SSLEVLDLSGSKIEILP--TSIGQLSRLRQLNLLDCNMLQ 904 (951)
Q Consensus 867 ~~L~~L~L~~n~l~~l~--~~l~~l~~L~~L~L~~~~~l~ 904 (951)
|+|++|++++|+|..+. ..+..+++|+.|+|.+||...
T Consensus 88 p~L~~L~L~~N~I~~l~~l~~L~~l~~L~~L~L~~NPv~~ 127 (175)
T PF14580_consen 88 PNLQELYLSNNKISDLNELEPLSSLPKLRVLSLEGNPVCE 127 (175)
T ss_dssp TT--EEE-TTS---SCCCCGGGGG-TT--EEE-TT-GGGG
T ss_pred CcCCEEECcCCcCCChHHhHHHHcCCCcceeeccCCcccc
Confidence 78888888888777554 456678888888888877643
No 49
>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]
Probab=98.89 E-value=3.1e-10 Score=118.14 Aligned_cols=193 Identities=21% Similarity=0.207 Sum_probs=139.4
Q ss_pred ceeeccccCCCCCccC--cccccCCCCcEEeccccccccc--ccccccCCCCCCEEeccCCCCCCccch-hcccCCCCcE
Q 002220 723 KVVKLRLWYTPIEEVP--SSIECLTNLETLDLRLCERLKR--VSTSICKLKSLGSLLLAFCSNLEGFPE-ILEKMELLET 797 (951)
Q Consensus 723 ~L~~L~l~~~~l~~lp--~~l~~l~~L~~L~Ls~~~~~~~--~~~~~~~l~~L~~L~l~~~~~~~~~~~-~l~~l~~L~~ 797 (951)
+|++..|.++.+...+ .....|++++.||||.|-+..- +......|++|+.|+++.|....-... .-..+++|+.
T Consensus 122 kL~~IsLdn~~V~~~~~~~~~k~~~~v~~LdLS~NL~~nw~~v~~i~eqLp~Le~LNls~Nrl~~~~~s~~~~~l~~lK~ 201 (505)
T KOG3207|consen 122 KLREISLDNYRVEDAGIEEYSKILPNVRDLDLSRNLFHNWFPVLKIAEQLPSLENLNLSSNRLSNFISSNTTLLLSHLKQ 201 (505)
T ss_pred hhhheeecCccccccchhhhhhhCCcceeecchhhhHHhHHHHHHHHHhcccchhcccccccccCCccccchhhhhhhhe
Confidence 4555556666666665 3677899999999999855433 334456899999999999875432221 1236788999
Q ss_pred EEcccCCCc--ccCccccCCCCCcEEeeccCCCCccCCcccCCcCCCCCCCCEEeccCCCCCCcC--ccCCCCCCCCEEE
Q 002220 798 LDLERTGVK--ELPPSFENLQGLRQLSLIGCSELKCSGWVLPTRISKLSSLERLQLSGCEIKEIP--EDIDCLSSLEVLD 873 (951)
Q Consensus 798 L~l~~n~i~--~l~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~l~~l~--~~l~~l~~L~~L~ 873 (951)
|.+++|+++ .+...+..+|+|+.|++..|..... .......++.|+.|+|++|++.+++ ...+.++.|+.|+
T Consensus 202 L~l~~CGls~k~V~~~~~~fPsl~~L~L~~N~~~~~----~~~~~~i~~~L~~LdLs~N~li~~~~~~~~~~l~~L~~Ln 277 (505)
T KOG3207|consen 202 LVLNSCGLSWKDVQWILLTFPSLEVLYLEANEIILI----KATSTKILQTLQELDLSNNNLIDFDQGYKVGTLPGLNQLN 277 (505)
T ss_pred EEeccCCCCHHHHHHHHHhCCcHHHhhhhcccccce----ecchhhhhhHHhhccccCCcccccccccccccccchhhhh
Confidence 999999998 3444567889999999999963321 2223456778999999999999877 5568899999999
Q ss_pred ccCCCCccc--chh-----hcCCCCCCEEeeCCCCC--CCcCCC--ccccccEeeec
Q 002220 874 LSGSKIEIL--PTS-----IGQLSRLRQLNLLDCNM--LQSIPE--LPRGLLRLNAQ 919 (951)
Q Consensus 874 L~~n~l~~l--~~~-----l~~l~~L~~L~L~~~~~--l~~lp~--~~~~L~~L~i~ 919 (951)
++.|.+.++ |+. ...+++|+.|++..|+. -.++-. ..++|+.|.+.
T Consensus 278 ls~tgi~si~~~d~~s~~kt~~f~kL~~L~i~~N~I~~w~sl~~l~~l~nlk~l~~~ 334 (505)
T KOG3207|consen 278 LSSTGIASIAEPDVESLDKTHTFPKLEYLNISENNIRDWRSLNHLRTLENLKHLRIT 334 (505)
T ss_pred ccccCcchhcCCCccchhhhcccccceeeecccCccccccccchhhccchhhhhhcc
Confidence 999998854 433 46799999999999776 223222 23566666543
No 50
>COG2256 MGS1 ATPase related to the helicase subunit of the Holliday junction resolvase [DNA replication, recombination, and repair]
Probab=98.84 E-value=4.5e-08 Score=102.04 Aligned_cols=172 Identities=20% Similarity=0.275 Sum_probs=104.3
Q ss_pred CCcccchhhH---HHHHHhhccCCCCcEEEEEEecCCChhHHHHHHHHHHhhccccceeecccccchhcCCCChHHHHHH
Q 002220 186 DGFVGLNSRI---QKIKSLLCIGLPDFRTIGIWGMGGIGKTTLAGAVFKLISREFEGKCFMPNVREESENGGGLVYLRDR 262 (951)
Q Consensus 186 ~~~vGr~~~~---~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~l~~~ 262 (951)
+++||.+.-+ .-|.+++. ...+.-..+||++|+||||||+.++......|...--+ ..+++.+.+.
T Consensus 24 de~vGQ~HLlg~~~~lrr~v~--~~~l~SmIl~GPPG~GKTTlA~liA~~~~~~f~~~sAv---------~~gvkdlr~i 92 (436)
T COG2256 24 DEVVGQEHLLGEGKPLRRAVE--AGHLHSMILWGPPGTGKTTLARLIAGTTNAAFEALSAV---------TSGVKDLREI 92 (436)
T ss_pred HHhcChHhhhCCCchHHHHHh--cCCCceeEEECCCCCCHHHHHHHHHHhhCCceEEeccc---------cccHHHHHHH
Confidence 4455544433 22334442 35567778999999999999999999877776533222 3445555443
Q ss_pred HHHHHhcCccccCCCCChHHHHHHhcCCcEEEEEeCCC--ChHHHHHHHhccCCCCCCCEEEE--EeCCchhhhhcC-CC
Q 002220 263 VVSEIFQEDIKIGTPYLPDYIVERLNRMKVLTVLDDVN--KVRQLHYLACVLDQFGPGSRIII--TTRDKRILDDFG-VC 337 (951)
Q Consensus 263 il~~l~~~~~~~~~~~~~~~l~~~l~~~~~LlVlDdv~--~~~~~~~l~~~~~~~~~gs~Ilv--TtR~~~v~~~~~-~~ 337 (951)
+-. .-.....+++.+|.+|.|. +..|-+.+++.. ..|.-|+| ||.++...-... ..
T Consensus 93 ~e~----------------a~~~~~~gr~tiLflDEIHRfnK~QQD~lLp~v---E~G~iilIGATTENPsF~ln~ALlS 153 (436)
T COG2256 93 IEE----------------ARKNRLLGRRTILFLDEIHRFNKAQQDALLPHV---ENGTIILIGATTENPSFELNPALLS 153 (436)
T ss_pred HHH----------------HHHHHhcCCceEEEEehhhhcChhhhhhhhhhh---cCCeEEEEeccCCCCCeeecHHHhh
Confidence 321 1122335789999999995 555566666554 45766665 666663210000 01
Q ss_pred ccceEEcCCCChhhhHHHHhhhhccCCCCC-----hhHHHHHHHHHHHcCCCchH
Q 002220 338 DTDIYEVNKLRFHEALVLFSNFAFKENQCP-----GDLLALLERVLKYANGNPLA 387 (951)
Q Consensus 338 ~~~~~~l~~L~~~~a~~Lf~~~~~~~~~~~-----~~~~~~~~~i~~~~~g~PLa 387 (951)
...++++++|+.++..+++.+.+......- .-.++..+-++..++|---+
T Consensus 154 R~~vf~lk~L~~~di~~~l~ra~~~~~rgl~~~~~~i~~~a~~~l~~~s~GD~R~ 208 (436)
T COG2256 154 RARVFELKPLSSEDIKKLLKRALLDEERGLGGQIIVLDEEALDYLVRLSNGDARR 208 (436)
T ss_pred hhheeeeecCCHHHHHHHHHHHHhhhhcCCCcccccCCHHHHHHHHHhcCchHHH
Confidence 127899999999999999988442211111 11234566788888887543
No 51
>PRK06893 DNA replication initiation factor; Validated
Probab=98.81 E-value=5e-08 Score=99.85 Aligned_cols=150 Identities=17% Similarity=0.261 Sum_probs=91.1
Q ss_pred cEEEEEEecCCChhHHHHHHHHHHhhccccceeecccccchhcCCCChHHHHHHHHHHHhcCccccCCCCChHHHHHHhc
Q 002220 209 FRTIGIWGMGGIGKTTLAGAVFKLISREFEGKCFMPNVREESENGGGLVYLRDRVVSEIFQEDIKIGTPYLPDYIVERLN 288 (951)
Q Consensus 209 ~~vv~I~G~gGiGKTtLA~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~l~~~il~~l~~~~~~~~~~~~~~~l~~~l~ 288 (951)
.+.+.|+|++|+|||+||+++++....+...+.|+.... . .... ..+.+.++
T Consensus 39 ~~~l~l~G~~G~GKThL~~ai~~~~~~~~~~~~y~~~~~-~-------~~~~--------------------~~~~~~~~ 90 (229)
T PRK06893 39 QPFFYIWGGKSSGKSHLLKAVSNHYLLNQRTAIYIPLSK-S-------QYFS--------------------PAVLENLE 90 (229)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHHHHcCCCeEEeeHHH-h-------hhhh--------------------HHHHhhcc
Confidence 457899999999999999999998765555566664210 0 0000 01111122
Q ss_pred CCcEEEEEeCCCCh---HHHHH-HHhccCCC-CCCCEEEE-EeCC---------chhhhhcCCCccceEEcCCCChhhhH
Q 002220 289 RMKVLTVLDDVNKV---RQLHY-LACVLDQF-GPGSRIII-TTRD---------KRILDDFGVCDTDIYEVNKLRFHEAL 353 (951)
Q Consensus 289 ~~~~LlVlDdv~~~---~~~~~-l~~~~~~~-~~gs~Ilv-TtR~---------~~v~~~~~~~~~~~~~l~~L~~~~a~ 353 (951)
+.-+||+||++.. .+|+. +...+... ..|..+|| |++. +++.+.++.. ..+++++++.++.+
T Consensus 91 -~~dlLilDDi~~~~~~~~~~~~l~~l~n~~~~~~~~illits~~~p~~l~~~~~~L~sRl~~g--~~~~l~~pd~e~~~ 167 (229)
T PRK06893 91 -QQDLVCLDDLQAVIGNEEWELAIFDLFNRIKEQGKTLLLISADCSPHALSIKLPDLASRLTWG--EIYQLNDLTDEQKI 167 (229)
T ss_pred -cCCEEEEeChhhhcCChHHHHHHHHHHHHHHHcCCcEEEEeCCCChHHccccchhHHHHHhcC--CeeeCCCCCHHHHH
Confidence 2348999999753 33432 22222211 23555655 4443 3455555443 68999999999999
Q ss_pred HHHhhhhccCCCCChhHHHHHHHHHHHcCCCchHHHHH
Q 002220 354 VLFSNFAFKENQCPGDLLALLERVLKYANGNPLALRVL 391 (951)
Q Consensus 354 ~Lf~~~~~~~~~~~~~~~~~~~~i~~~~~g~PLal~~~ 391 (951)
+++.+.+.......+ +++.+-|++.+.|..-++..+
T Consensus 168 ~iL~~~a~~~~l~l~--~~v~~~L~~~~~~d~r~l~~~ 203 (229)
T PRK06893 168 IVLQRNAYQRGIELS--DEVANFLLKRLDRDMHTLFDA 203 (229)
T ss_pred HHHHHHHHHcCCCCC--HHHHHHHHHhccCCHHHHHHH
Confidence 999998864432222 256677888887776555443
No 52
>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]
Probab=98.73 E-value=1.4e-09 Score=110.55 Aligned_cols=160 Identities=16% Similarity=0.125 Sum_probs=79.2
Q ss_pred cCCCCcEEeccccccccccccc----ccCCCCCCEEeccCCCCCCcc-------------chhcccCCCCcEEEcccCCC
Q 002220 743 CLTNLETLDLRLCERLKRVSTS----ICKLKSLGSLLLAFCSNLEGF-------------PEILEKMELLETLDLERTGV 805 (951)
Q Consensus 743 ~l~~L~~L~Ls~~~~~~~~~~~----~~~l~~L~~L~l~~~~~~~~~-------------~~~l~~l~~L~~L~l~~n~i 805 (951)
.+++|++|+||+|-+....+.. +.++.+|++|+|.+|.....- ....++.+.|+++...+|.+
T Consensus 90 ~~~~L~~ldLSDNA~G~~g~~~l~~ll~s~~~L~eL~L~N~Glg~~ag~~l~~al~~l~~~kk~~~~~~Lrv~i~~rNrl 169 (382)
T KOG1909|consen 90 GCPKLQKLDLSDNAFGPKGIRGLEELLSSCTDLEELYLNNCGLGPEAGGRLGRALFELAVNKKAASKPKLRVFICGRNRL 169 (382)
T ss_pred cCCceeEeeccccccCccchHHHHHHHHhccCHHHHhhhcCCCChhHHHHHHHHHHHHHHHhccCCCcceEEEEeecccc
Confidence 4456666666666554433322 345566666666666432211 11123445566666666655
Q ss_pred cccC-----ccccCCCCCcEEeeccCCCCccCCcccCCcCCCCCCCCEEeccCCCCCC-----cCccCCCCCCCCEEEcc
Q 002220 806 KELP-----PSFENLQGLRQLSLIGCSELKCSGWVLPTRISKLSSLERLQLSGCEIKE-----IPEDIDCLSSLEVLDLS 875 (951)
Q Consensus 806 ~~l~-----~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~l~~-----l~~~l~~l~~L~~L~L~ 875 (951)
..-+ ..|...+.|+.+.++.|.+..-....+...+..+++|+.|+|.+|.++. +...+..+++|++|+++
T Consensus 170 en~ga~~~A~~~~~~~~leevr~~qN~I~~eG~~al~eal~~~~~LevLdl~DNtft~egs~~LakaL~s~~~L~El~l~ 249 (382)
T KOG1909|consen 170 ENGGATALAEAFQSHPTLEEVRLSQNGIRPEGVTALAEALEHCPHLEVLDLRDNTFTLEGSVALAKALSSWPHLRELNLG 249 (382)
T ss_pred ccccHHHHHHHHHhccccceEEEecccccCchhHHHHHHHHhCCcceeeecccchhhhHHHHHHHHHhcccchheeeccc
Confidence 4322 2344555666666665554432111223335555666666666665552 33344455566666666
Q ss_pred CCCCcc-----cchhh-cCCCCCCEEeeCCCCC
Q 002220 876 GSKIEI-----LPTSI-GQLSRLRQLNLLDCNM 902 (951)
Q Consensus 876 ~n~l~~-----l~~~l-~~l~~L~~L~L~~~~~ 902 (951)
+|.++. +-..+ ...|+|+.|.+.+|..
T Consensus 250 dcll~~~Ga~a~~~al~~~~p~L~vl~l~gNeI 282 (382)
T KOG1909|consen 250 DCLLENEGAIAFVDALKESAPSLEVLELAGNEI 282 (382)
T ss_pred ccccccccHHHHHHHHhccCCCCceeccCcchh
Confidence 665541 11122 2355666666666544
No 53
>KOG3678 consensus SARM protein (with sterile alpha and armadillo motifs) [Extracellular structures]
Probab=98.71 E-value=8.5e-08 Score=100.00 Aligned_cols=93 Identities=25% Similarity=0.479 Sum_probs=79.8
Q ss_pred CCcccEEEcccccccccchHHHHHHHHHhCCCeEEecCcccCCCCCchHHHHHHhhccceEEEEecCCccc--------c
Q 002220 8 CCKFDVFLSFRGEDTRDNFTSHLYAALCRKKIKTFIDDEELRRGDDISPALLNAIQGSKISVIIFSKDYAS--------S 79 (951)
Q Consensus 8 ~~~~dvfis~~~~d~~~~~~~~l~~~L~~~g~~~~~d~~~~~~g~~~~~~~~~~i~~s~~~i~v~s~~~~~--------s 79 (951)
....||||||+.. +....++-|.-.|.-+||+||+|-+.+..|+ +.+.+.+.|..++.+|.|+|||..+ -
T Consensus 610 skq~DVFISYRRs-tGnQLASLiKV~LQL~GyrVFIDVdKL~AGK-FdssLlkni~aAkhFiLVLtP~sLDr~lnD~nCe 687 (832)
T KOG3678|consen 610 SKQIDVFISYRRS-TGNQLASLIKVLLQLRGYRVFIDVDKLYAGK-FDSSLLKNIQAAKHFILVLTPNSLDRLLNDDNCE 687 (832)
T ss_pred cCCcceEEEeecc-ccHHHHHHHHHHHHhcCceEEEehhhhhccc-ccHHHHHHHHhhheeEEEeCcchHHHHhccccHH
Confidence 4568999999765 3467889998999999999999998899988 7789999999999999999999765 3
Q ss_pred hhhHHHHHHHHHhhhcCCCeEEEEEee
Q 002220 80 KWCLDELVKILDCKNLNGQMVVPVFYQ 106 (951)
Q Consensus 80 ~wc~~el~~~~~~~~~~~~~~~pv~~~ 106 (951)
.|...|++.++++.+. +||||-.
T Consensus 688 DWVHKEl~~Afe~~KN----IiPI~D~ 710 (832)
T KOG3678|consen 688 DWVHKELKCAFEHQKN----IIPIFDT 710 (832)
T ss_pred HHHHHHHHHHHHhcCC----eeeeecc
Confidence 5888999999988655 9999843
No 54
>KOG4341 consensus F-box protein containing LRR [General function prediction only]
Probab=98.67 E-value=8e-10 Score=114.55 Aligned_cols=252 Identities=20% Similarity=0.321 Sum_probs=114.9
Q ss_pred CCCCCcEEecCCCCCCCccC--cccccCCcccEEeccCCCCCcccCCC-C--CCCCCceeeCcCCCCCCC-----CCccc
Q 002220 652 EAPNLERINLCNCTNLSYIP--LYVQNFHNLGSLSLKGCKSLRCFPRN-I--HFRSPIEIDCAWCVNLTE-----FPQIS 721 (951)
Q Consensus 652 ~l~~L~~L~L~~~~~~~~~~--~~~~~l~~L~~L~L~~~~~l~~l~~~-~--~l~~L~~L~l~~~~~l~~-----l~~~~ 721 (951)
.+|++++|.+.+|..++... ..-..+++|++|++..|..++...-. + ++++|..+++++|+.+.. +....
T Consensus 162 ~CpnIehL~l~gc~~iTd~s~~sla~~C~~l~~l~L~~c~~iT~~~Lk~la~gC~kL~~lNlSwc~qi~~~gv~~~~rG~ 241 (483)
T KOG4341|consen 162 NCPNIEHLALYGCKKITDSSLLSLARYCRKLRHLNLHSCSSITDVSLKYLAEGCRKLKYLNLSWCPQISGNGVQALQRGC 241 (483)
T ss_pred hCCchhhhhhhcceeccHHHHHHHHHhcchhhhhhhcccchhHHHHHHHHHHhhhhHHHhhhccCchhhcCcchHHhccc
Confidence 44555555555554332211 11134455555555555544433222 1 455555555555554443 11111
Q ss_pred cceeeccccCCCC---CccCcccccCCCCcEEeccccccccccc--ccccCCCCCCEEeccCCCCCCccc--hhcccCCC
Q 002220 722 GKVVKLRLWYTPI---EEVPSSIECLTNLETLDLRLCERLKRVS--TSICKLKSLGSLLLAFCSNLEGFP--EILEKMEL 794 (951)
Q Consensus 722 ~~L~~L~l~~~~l---~~lp~~l~~l~~L~~L~Ls~~~~~~~~~--~~~~~l~~L~~L~l~~~~~~~~~~--~~l~~l~~ 794 (951)
..++++.+.++.- +.+-..-..+..+..+++..|..++... ..-..+..|+.|..++|......+ ....+..+
T Consensus 242 ~~l~~~~~kGC~e~~le~l~~~~~~~~~i~~lnl~~c~~lTD~~~~~i~~~c~~lq~l~~s~~t~~~d~~l~aLg~~~~~ 321 (483)
T KOG4341|consen 242 KELEKLSLKGCLELELEALLKAAAYCLEILKLNLQHCNQLTDEDLWLIACGCHALQVLCYSSCTDITDEVLWALGQHCHN 321 (483)
T ss_pred hhhhhhhhcccccccHHHHHHHhccChHhhccchhhhccccchHHHHHhhhhhHhhhhcccCCCCCchHHHHHHhcCCCc
Confidence 1222332222110 0111111234445556666665443322 122356667777777776654422 22345566
Q ss_pred CcEEEcccCCC-ccc--CccccCCCCCcEEeeccCCCCccCCcccCCcCCCCCCCCEEeccCCCCCC------cCccCCC
Q 002220 795 LETLDLERTGV-KEL--PPSFENLQGLRQLSLIGCSELKCSGWVLPTRISKLSSLERLQLSGCEIKE------IPEDIDC 865 (951)
Q Consensus 795 L~~L~l~~n~i-~~l--~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~l~~------l~~~l~~ 865 (951)
|+.|.+..+.- +.. ..--.+.+.|+.+++.+|....... +...-.+++.|+.|.|+.|.... +...-..
T Consensus 322 L~~l~l~~c~~fsd~~ft~l~rn~~~Le~l~~e~~~~~~d~t--L~sls~~C~~lr~lslshce~itD~gi~~l~~~~c~ 399 (483)
T KOG4341|consen 322 LQVLELSGCQQFSDRGFTMLGRNCPHLERLDLEECGLITDGT--LASLSRNCPRLRVLSLSHCELITDEGIRHLSSSSCS 399 (483)
T ss_pred eEEEeccccchhhhhhhhhhhcCChhhhhhcccccceehhhh--HhhhccCCchhccCChhhhhhhhhhhhhhhhhcccc
Confidence 66666666542 111 0111345566666666665444321 22223455666666666664332 1222234
Q ss_pred CCCCCEEEccCCCCc--ccchhhcCCCCCCEEeeCCCCCCCc
Q 002220 866 LSSLEVLDLSGSKIE--ILPTSIGQLSRLRQLNLLDCNMLQS 905 (951)
Q Consensus 866 l~~L~~L~L~~n~l~--~l~~~l~~l~~L~~L~L~~~~~l~~ 905 (951)
+..|..|.|+++... ..-+.+..+++|+.+++-+|...+.
T Consensus 400 ~~~l~~lEL~n~p~i~d~~Le~l~~c~~Leri~l~~~q~vtk 441 (483)
T KOG4341|consen 400 LEGLEVLELDNCPLITDATLEHLSICRNLERIELIDCQDVTK 441 (483)
T ss_pred ccccceeeecCCCCchHHHHHHHhhCcccceeeeechhhhhh
Confidence 455666666666433 1223455566666666666655443
No 55
>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A.
Probab=98.66 E-value=1.1e-08 Score=98.00 Aligned_cols=125 Identities=18% Similarity=0.148 Sum_probs=35.2
Q ss_pred cCCCccEEEEcCCCCCCCCccCcceecCcccccCCCcceEEEeecCCCCCCCCccccccceecccCCcccccccccc-cc
Q 002220 551 NMSNLRLLKFYMPEHRGLPIMSSNVRLDEDLECLPEELRYLYWHEYPLKTLPLDFDLENLIALHLPYSEVEQIWKGQ-KE 629 (951)
Q Consensus 551 ~l~~Lr~L~l~~~~~~~l~~~~~~~~~~~~~~~l~~~L~~L~l~~~~l~~lp~~~~l~~L~~L~L~~~~i~~l~~~~-~~ 629 (951)
+..++|.|++.+|.+..+ +.+.....+|+.|++++|.+++++....+++|++|++++|.|+++..++ ..
T Consensus 17 n~~~~~~L~L~~n~I~~I----------e~L~~~l~~L~~L~Ls~N~I~~l~~l~~L~~L~~L~L~~N~I~~i~~~l~~~ 86 (175)
T PF14580_consen 17 NPVKLRELNLRGNQISTI----------ENLGATLDKLEVLDLSNNQITKLEGLPGLPRLKTLDLSNNRISSISEGLDKN 86 (175)
T ss_dssp -----------------------------S--TT-TT--EEE-TTS--S--TT----TT--EEE--SS---S-CHHHHHH
T ss_pred cccccccccccccccccc----------cchhhhhcCCCEEECCCCCCccccCccChhhhhhcccCCCCCCccccchHHh
Confidence 344556666666554221 1222222356666666666666665556666666666666666665443 34
Q ss_pred ccccceeccCCCCCC--CcCCCCCCCCCCcEEecCCCCCCCccC---cccccCCcccEEec
Q 002220 630 AFKLKFIDLHDSHNL--TSIPEPLEAPNLERINLCNCTNLSYIP---LYVQNFHNLGSLSL 685 (951)
Q Consensus 630 l~~L~~L~L~~~~~~--~~~~~~~~l~~L~~L~L~~~~~~~~~~---~~~~~l~~L~~L~L 685 (951)
+++|+.|++++|++. ..+..+..+++|++|+|.+|+....-. ..+..+++|+.||-
T Consensus 87 lp~L~~L~L~~N~I~~l~~l~~L~~l~~L~~L~L~~NPv~~~~~YR~~vi~~lP~Lk~LD~ 147 (175)
T PF14580_consen 87 LPNLQELYLSNNKISDLNELEPLSSLPKLRVLSLEGNPVCEKKNYRLFVIYKLPSLKVLDG 147 (175)
T ss_dssp -TT--EEE-TTS---SCCCCGGGGG-TT--EEE-TT-GGGGSTTHHHHHHHH-TT-SEETT
T ss_pred CCcCCEEECcCCcCCChHHhHHHHcCCCcceeeccCCcccchhhHHHHHHHHcChhheeCC
Confidence 666666666666542 222233355666666666654432211 13445555555554
No 56
>PTZ00112 origin recognition complex 1 protein; Provisional
Probab=98.65 E-value=1.2e-06 Score=100.59 Aligned_cols=244 Identities=13% Similarity=0.079 Sum_probs=128.3
Q ss_pred CCCCCCcccchhhHHHHHHhhcc---CCCCcEEEEEEecCCChhHHHHHHHHHHhhcc-----cc--ceeecccccchhc
Q 002220 182 STYSDGFVGLNSRIQKIKSLLCI---GLPDFRTIGIWGMGGIGKTTLAGAVFKLISRE-----FE--GKCFMPNVREESE 251 (951)
Q Consensus 182 ~~~~~~~vGr~~~~~~l~~~L~~---~~~~~~vv~I~G~gGiGKTtLA~~~~~~~~~~-----f~--~~~~~~~~~~~~~ 251 (951)
...++.+.|||+|+++|...|.. ++....++.|+|.+|.|||+.++.|.+++... .. .++++.+..
T Consensus 751 DYVPD~LPhREeEIeeLasfL~paIkgsgpnnvLYIyG~PGTGKTATVK~VLrELqeeaeqk~lp~f~vVYINCm~---- 826 (1164)
T PTZ00112 751 DVVPKYLPCREKEIKEVHGFLESGIKQSGSNQILYISGMPGTGKTATVYSVIQLLQHKTKQKLLPSFNVFEINGMN---- 826 (1164)
T ss_pred ccCCCcCCChHHHHHHHHHHHHHHHhcCCCCceEEEECCCCCCHHHHHHHHHHHHHHHHhhccCCCceEEEEeCCc----
Confidence 35567899999999999988862 23334677899999999999999999866422 11 133443221
Q ss_pred CCCChHHHHHHHHHHHhcCccccCCC--CChHHHHHHh-c--CCcEEEEEeCCCChH--HHHHHHhccCCC-CCCCEEEE
Q 002220 252 NGGGLVYLRDRVVSEIFQEDIKIGTP--YLPDYIVERL-N--RMKVLTVLDDVNKVR--QLHYLACVLDQF-GPGSRIII 323 (951)
Q Consensus 252 ~~~~~~~l~~~il~~l~~~~~~~~~~--~~~~~l~~~l-~--~~~~LlVlDdv~~~~--~~~~l~~~~~~~-~~gs~Ilv 323 (951)
......+...+..++.......... ...+.+.+.+ . +...+||||+|+... .-+.|...+.+. ..+++|+|
T Consensus 827 -Lstp~sIYqvI~qqL~g~~P~~GlsS~evLerLF~~L~k~~r~v~IIILDEID~L~kK~QDVLYnLFR~~~~s~SKLiL 905 (1164)
T PTZ00112 827 -VVHPNAAYQVLYKQLFNKKPPNALNSFKILDRLFNQNKKDNRNVSILIIDEIDYLITKTQKVLFTLFDWPTKINSKLVL 905 (1164)
T ss_pred -cCCHHHHHHHHHHHHcCCCCCccccHHHHHHHHHhhhhcccccceEEEeehHhhhCccHHHHHHHHHHHhhccCCeEEE
Confidence 1234455666666664433221110 0112333333 1 224589999996432 112222222211 23555544
Q ss_pred --EeCCc--------hhhhhcCCCccceEEcCCCChhhhHHHHhhhhccC-C-CCChhHHHHHHHHHHHcCCCchHHHHH
Q 002220 324 --TTRDK--------RILDDFGVCDTDIYEVNKLRFHEALVLFSNFAFKE-N-QCPGDLLALLERVLKYANGNPLALRVL 391 (951)
Q Consensus 324 --TtR~~--------~v~~~~~~~~~~~~~l~~L~~~~a~~Lf~~~~~~~-~-~~~~~~~~~~~~i~~~~~g~PLal~~~ 391 (951)
.|.+. .+...++. ..+..++++.++..+++..++-.. . ..++.++-+|+.++...|..=.||.++
T Consensus 906 IGISNdlDLperLdPRLRSRLg~---eeIvF~PYTaEQL~dILk~RAe~A~gVLdDdAIELIArkVAq~SGDARKALDIL 982 (1164)
T PTZ00112 906 IAISNTMDLPERLIPRCRSRLAF---GRLVFSPYKGDEIEKIIKERLENCKEIIDHTAIQLCARKVANVSGDIRKALQIC 982 (1164)
T ss_pred EEecCchhcchhhhhhhhhcccc---ccccCCCCCHHHHHHHHHHHHHhCCCCCCHHHHHHHHHhhhhcCCHHHHHHHHH
Confidence 33322 22222322 346779999999999999887532 1 122233333443443334445565554
Q ss_pred hhhcCC-----CCHHHHHHHHHHHhcCCCcchHHHHHHhhcCCchhhHhhhhhe
Q 002220 392 GSFFHR-----KSKSDWEKALENLNRISDPDIYDVLKISYNDLRPEEKSMFLDI 440 (951)
Q Consensus 392 ~~~L~~-----~~~~~w~~~l~~l~~~~~~~i~~~l~~sy~~L~~~~k~~fl~~ 440 (951)
-.+... -..+....+..++.. ..+.-....||.+.|-.++-+
T Consensus 983 RrAgEikegskVT~eHVrkAleeiE~-------srI~e~IktLPlHqKLVLlAL 1029 (1164)
T PTZ00112 983 RKAFENKRGQKIVPRDITEATNQLFD-------SPLTNAINYLPWPFKMFLTCL 1029 (1164)
T ss_pred HHHHhhcCCCccCHHHHHHHHHHHHh-------hhHHHHHHcCCHHHHHHHHHH
Confidence 433321 123333333333211 122334467888877655533
No 57
>PRK13342 recombination factor protein RarA; Reviewed
Probab=98.63 E-value=4.7e-07 Score=101.57 Aligned_cols=180 Identities=19% Similarity=0.248 Sum_probs=106.4
Q ss_pred CCCCCCcccchhhHHH---HHHhhccCCCCcEEEEEEecCCChhHHHHHHHHHHhhccccceeecccccchhcCCCChHH
Q 002220 182 STYSDGFVGLNSRIQK---IKSLLCIGLPDFRTIGIWGMGGIGKTTLAGAVFKLISREFEGKCFMPNVREESENGGGLVY 258 (951)
Q Consensus 182 ~~~~~~~vGr~~~~~~---l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~ 258 (951)
|...+++||.+..+.. +..++.. .....+.++|++|+||||+|+.+++.....|...-.. ..+...
T Consensus 8 P~~l~d~vGq~~~v~~~~~L~~~i~~--~~~~~ilL~GppGtGKTtLA~~ia~~~~~~~~~l~a~---------~~~~~~ 76 (413)
T PRK13342 8 PKTLDEVVGQEHLLGPGKPLRRMIEA--GRLSSMILWGPPGTGKTTLARIIAGATDAPFEALSAV---------TSGVKD 76 (413)
T ss_pred CCCHHHhcCcHHHhCcchHHHHHHHc--CCCceEEEECCCCCCHHHHHHHHHHHhCCCEEEEecc---------cccHHH
Confidence 3445679999887666 7777743 3456788999999999999999998765554321111 112222
Q ss_pred HHHHHHHHHhcCccccCCCCChHHHHHHhcCCcEEEEEeCCCCh--HHHHHHHhccCCCCCCCEEEE--EeCCch--hhh
Q 002220 259 LRDRVVSEIFQEDIKIGTPYLPDYIVERLNRMKVLTVLDDVNKV--RQLHYLACVLDQFGPGSRIII--TTRDKR--ILD 332 (951)
Q Consensus 259 l~~~il~~l~~~~~~~~~~~~~~~l~~~l~~~~~LlVlDdv~~~--~~~~~l~~~~~~~~~gs~Ilv--TtR~~~--v~~ 332 (951)
+ +.++..... ....+++.++++|+++.. .+.+.+...+. .|..++| ||.+.. +..
T Consensus 77 i-r~ii~~~~~---------------~~~~g~~~vL~IDEi~~l~~~~q~~LL~~le---~~~iilI~att~n~~~~l~~ 137 (413)
T PRK13342 77 L-REVIEEARQ---------------RRSAGRRTILFIDEIHRFNKAQQDALLPHVE---DGTITLIGATTENPSFEVNP 137 (413)
T ss_pred H-HHHHHHHHH---------------hhhcCCceEEEEechhhhCHHHHHHHHHHhh---cCcEEEEEeCCCChhhhccH
Confidence 2 112221110 111357789999999754 34555555443 3444544 344332 111
Q ss_pred hcCCCccceEEcCCCChhhhHHHHhhhhccCCCCC-hhHHHHHHHHHHHcCCCchHHHHHh
Q 002220 333 DFGVCDTDIYEVNKLRFHEALVLFSNFAFKENQCP-GDLLALLERVLKYANGNPLALRVLG 392 (951)
Q Consensus 333 ~~~~~~~~~~~l~~L~~~~a~~Lf~~~~~~~~~~~-~~~~~~~~~i~~~~~g~PLal~~~~ 392 (951)
... .....+.+.+++.++..+++.+.+....... .-..+..+.+++.++|.+..+..+.
T Consensus 138 aL~-SR~~~~~~~~ls~e~i~~lL~~~l~~~~~~~i~i~~~al~~l~~~s~Gd~R~aln~L 197 (413)
T PRK13342 138 ALL-SRAQVFELKPLSEEDIEQLLKRALEDKERGLVELDDEALDALARLANGDARRALNLL 197 (413)
T ss_pred HHh-ccceeeEeCCCCHHHHHHHHHHHHHHhhcCCCCCCHHHHHHHHHhCCCCHHHHHHHH
Confidence 110 1126799999999999999988653211111 1223567788999999987654433
No 58
>PRK15386 type III secretion protein GogB; Provisional
Probab=98.62 E-value=7.9e-08 Score=103.14 Aligned_cols=155 Identities=24% Similarity=0.422 Sum_probs=96.6
Q ss_pred ccCCCCCCEEeccCCCCCCccchhcccCCCCcEEEccc-CCCcccCccccCCCCCcEEeeccCCCCccCCcccCCcCCCC
Q 002220 765 ICKLKSLGSLLLAFCSNLEGFPEILEKMELLETLDLER-TGVKELPPSFENLQGLRQLSLIGCSELKCSGWVLPTRISKL 843 (951)
Q Consensus 765 ~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~-n~i~~l~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~l 843 (951)
+..+.+++.|++++| .++.+|. -.++|+.|.+++ +.++.+|..+ .++|+.|++++|.... .+|.
T Consensus 48 ~~~~~~l~~L~Is~c-~L~sLP~---LP~sLtsL~Lsnc~nLtsLP~~L--P~nLe~L~Ls~Cs~L~----sLP~----- 112 (426)
T PRK15386 48 IEEARASGRLYIKDC-DIESLPV---LPNELTEITIENCNNLTTLPGSI--PEGLEKLTVCHCPEIS----GLPE----- 112 (426)
T ss_pred HHHhcCCCEEEeCCC-CCcccCC---CCCCCcEEEccCCCCcccCCchh--hhhhhheEccCccccc----cccc-----
Confidence 445678888999888 4666662 345688888877 4555666544 3588888888885443 2443
Q ss_pred CCCCEEeccCCCCCCcCccCCCCCCCCEEEccCCCCc---ccchhhcCC-CCCCEEeeCCCCCCCcCCCccccccEeeec
Q 002220 844 SSLERLQLSGCEIKEIPEDIDCLSSLEVLDLSGSKIE---ILPTSIGQL-SRLRQLNLLDCNMLQSIPELPRGLLRLNAQ 919 (951)
Q Consensus 844 ~~L~~L~L~~~~l~~l~~~l~~l~~L~~L~L~~n~l~---~l~~~l~~l-~~L~~L~L~~~~~l~~lp~~~~~L~~L~i~ 919 (951)
+|+.|+++++....++. -+++|+.|.+.+++-. .+| ..+ ++|+.|++++|..+..-+.+|.+|+.|++.
T Consensus 113 -sLe~L~L~~n~~~~L~~---LPssLk~L~I~~~n~~~~~~lp---~~LPsSLk~L~Is~c~~i~LP~~LP~SLk~L~ls 185 (426)
T PRK15386 113 -SVRSLEIKGSATDSIKN---VPNGLTSLSINSYNPENQARID---NLISPSLKTLSLTGCSNIILPEKLPESLQSITLH 185 (426)
T ss_pred -ccceEEeCCCCCccccc---CcchHhheeccccccccccccc---cccCCcccEEEecCCCcccCcccccccCcEEEec
Confidence 57777777665443221 1235777777544311 122 123 579999999988765434588899999987
Q ss_pred cCc--ccccC-CCcCcchhhhhcccc
Q 002220 920 NCR--RLRSL-PELPSCLEDQDFRNM 942 (951)
Q Consensus 920 ~C~--~L~~l-p~~~~~L~~l~~~~~ 942 (951)
.+. .+... +.+|+++ .|++.++
T Consensus 186 ~n~~~sLeI~~~sLP~nl-~L~f~n~ 210 (426)
T PRK15386 186 IEQKTTWNISFEGFPDGL-DIDLQNS 210 (426)
T ss_pred ccccccccCccccccccc-Eechhhh
Confidence 643 32222 2366666 6665553
No 59
>COG3903 Predicted ATPase [General function prediction only]
Probab=98.58 E-value=4.3e-08 Score=103.03 Aligned_cols=278 Identities=20% Similarity=0.222 Sum_probs=176.7
Q ss_pred CcEEEEEEecCCChhHHHHHHHHHHhhccccceeecccccchhcCCCChHHHHHHHHHHHhcCccccCCCCChHHHHHHh
Q 002220 208 DFRTIGIWGMGGIGKTTLAGAVFKLISREFEGKCFMPNVREESENGGGLVYLRDRVVSEIFQEDIKIGTPYLPDYIVERL 287 (951)
Q Consensus 208 ~~~vv~I~G~gGiGKTtLA~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~l~~~il~~l~~~~~~~~~~~~~~~l~~~l 287 (951)
..|.+.++|.|||||||++-++.. ++..|...+|+.+....++ ...+.-.....+.-...+. ......+..+.
T Consensus 13 ~~RlvtL~g~ggvgkttl~~~~a~-~~~~~~~~v~~vdl~pitD----~~~v~~~~ag~~gl~~~~g--~~~~~~~~~~~ 85 (414)
T COG3903 13 ALRLVTLTGAGGVGKTTLALQAAH-AASEYADGVAFVDLAPITD----PALVFPTLAGALGLHVQPG--DSAVDTLVRRI 85 (414)
T ss_pred hhheeeeeccCccceehhhhhhHh-HhhhcccceeeeeccccCc----hhHhHHHHHhhcccccccc--hHHHHHHHHHH
Confidence 468899999999999999999999 8889998887776665554 1111122222222211110 11125667777
Q ss_pred cCCcEEEEEeCCCChHH-HHHHHhccCCCCCCCEEEEEeCCchhhhhcCCCccceEEcCCCChh-hhHHHHhhhhccCC-
Q 002220 288 NRMKVLTVLDDVNKVRQ-LHYLACVLDQFGPGSRIIITTRDKRILDDFGVCDTDIYEVNKLRFH-EALVLFSNFAFKEN- 364 (951)
Q Consensus 288 ~~~~~LlVlDdv~~~~~-~~~l~~~~~~~~~gs~IlvTtR~~~v~~~~~~~~~~~~~l~~L~~~-~a~~Lf~~~~~~~~- 364 (951)
.++|.++|+||-..... -..+...+....+.-+|+.|+|...... +...+.++.|+.. ++.++|...+....
T Consensus 86 ~~rr~llvldncehl~~~~a~~i~all~~~~~~~~~atsre~~l~~-----ge~~~~~~~L~~~d~a~~lf~~ra~~~~~ 160 (414)
T COG3903 86 GDRRALLVLDNCEHLLDACAALIVALLGACPRLAILATSREAILVA-----GEVHRRVPSLSLFDEAIELFVCRAVLVAL 160 (414)
T ss_pred hhhhHHHHhcCcHHHHHHHHHHHHHHHccchhhhhHHHhHhhhccc-----ccccccCCccccCCchhHHHHHHHHHhcc
Confidence 88999999999865533 2223333333355667899999774422 2267888888876 78899877663211
Q ss_pred --CCChhHHHHHHHHHHHcCCCchHHHHHhhhcCCCCHHHHHHHHHH----HhcC------CCcchHHHHHHhhcCCchh
Q 002220 365 --QCPGDLLALLERVLKYANGNPLALRVLGSFFHRKSKSDWEKALEN----LNRI------SDPDIYDVLKISYNDLRPE 432 (951)
Q Consensus 365 --~~~~~~~~~~~~i~~~~~g~PLal~~~~~~L~~~~~~~w~~~l~~----l~~~------~~~~i~~~l~~sy~~L~~~ 432 (951)
.-.........+|.+...|.|++|..+++..+.....+....+.. +... ......+.+..||.-|..-
T Consensus 161 ~f~l~~~~~a~v~~icr~ldg~~laielaaarv~sl~~~~i~~~L~drf~ll~~~~r~a~~~~qtl~asl~ws~~lLtgw 240 (414)
T COG3903 161 SFWLTDDNAAAVAEICRRLDGIPLAIELAAARVRSLSPDEIAAGLRDRFRLLTGGARLAVLRQQTLRASLDWSYALLTGW 240 (414)
T ss_pred ceeecCCchHHHHHHHHHhhcchHHHHHHHHHHHhcCHHHHHHHHhhHHHHHhcccccchhHHHhccchhhhhhHhhhhH
Confidence 011223356789999999999999999998887766655554442 2222 1234677899999999998
Q ss_pred hHhhhhheecccCCCCHHHHHHH-hcCCC----C-cccchHHHHhccCceee----CCeEEccHHHHHHHHHHHh
Q 002220 433 EKSMFLDIACFFAGEKKDFLTCI-LDDPN----F-PHCGLNVLIEKSLITMS----GYDIRMHDLLQEMGREIVR 497 (951)
Q Consensus 433 ~k~~fl~~a~f~~~~~~~~l~~~-~~~~~----~-~~~~l~~L~~~sLi~~~----~~~~~mH~lv~~~~~~~~~ 497 (951)
++-.|-.++.|...+..+..... ..... | .-..+..+++++++... .-.++.-+-.+.|+.....
T Consensus 241 e~~~~~rLa~~~g~f~~~l~~~~a~g~~~~~~~y~~~~a~~ll~~kslv~a~~~~~~a~~Rl~eT~r~YalaeL~ 315 (414)
T COG3903 241 ERALFGRLAVFVGGFDLGLALAVAAGADVDVPRYLVLLALTLLVDKSLVVALDLLGRARYRLLETGRRYALAELH 315 (414)
T ss_pred HHHHhcchhhhhhhhcccHHHHHhcCCccccchHHHHHHHHHHhhccchhhhhhhhHHHHHHHHHHHHHHHHHHH
Confidence 99999999999888866532222 11111 1 22346777888887544 2234444444555444433
No 60
>PF05496 RuvB_N: Holliday junction DNA helicase ruvB N-terminus; InterPro: IPR008824 The RuvB protein makes up part of the RuvABC revolvasome which catalyses the resolution of Holliday junctions that arise during genetic recombination and DNA repair. Branch migration is catalysed by the RuvB protein that is targeted to the Holliday junction by the structure specific RuvA protein []. This group of sequences contain this signature which is located in the N-terminal region of the proteins.; GO: 0009378 four-way junction helicase activity, 0006281 DNA repair, 0006310 DNA recombination; PDB: 1IQP_B 3PFI_B 1IXR_C 1HQC_B 1IXS_B.
Probab=98.54 E-value=1.4e-06 Score=85.07 Aligned_cols=180 Identities=18% Similarity=0.131 Sum_probs=97.4
Q ss_pred CCCCCCcccchhhHHHHHHhhc---cCCCCcEEEEEEecCCChhHHHHHHHHHHhhccccceeecccccchhcCCCChHH
Q 002220 182 STYSDGFVGLNSRIQKIKSLLC---IGLPDFRTIGIWGMGGIGKTTLAGAVFKLISREFEGKCFMPNVREESENGGGLVY 258 (951)
Q Consensus 182 ~~~~~~~vGr~~~~~~l~~~L~---~~~~~~~vv~I~G~gGiGKTtLA~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~ 258 (951)
|..-++|||.++-++.+.-++. ...+...-+.+||++|+||||||.-+++.....|.. .... . -.....
T Consensus 20 P~~L~efiGQ~~l~~~l~i~i~aa~~r~~~l~h~lf~GPPG~GKTTLA~IIA~e~~~~~~~---~sg~--~---i~k~~d 91 (233)
T PF05496_consen 20 PKSLDEFIGQEHLKGNLKILIRAAKKRGEALDHMLFYGPPGLGKTTLARIIANELGVNFKI---TSGP--A---IEKAGD 91 (233)
T ss_dssp -SSCCCS-S-HHHHHHHHHHHHHHHCTTS---EEEEESSTTSSHHHHHHHHHHHCT--EEE---EECC--C-----SCHH
T ss_pred CCCHHHccCcHHHHhhhHHHHHHHHhcCCCcceEEEECCCccchhHHHHHHHhccCCCeEe---ccch--h---hhhHHH
Confidence 4566899999999888766554 223456788999999999999999999988777642 1100 0 001111
Q ss_pred HHHHHHHHHhcCccccCCCCChHHHHHHhcCCcEEEEEeCCCCh--HHHHHHHhccCCC--------CCC----------
Q 002220 259 LRDRVVSEIFQEDIKIGTPYLPDYIVERLNRMKVLTVLDDVNKV--RQLHYLACVLDQF--------GPG---------- 318 (951)
Q Consensus 259 l~~~il~~l~~~~~~~~~~~~~~~l~~~l~~~~~LlVlDdv~~~--~~~~~l~~~~~~~--------~~g---------- 318 (951)
+. .++ ..++ ++-+|.+|.+... .+-+.+.+....+ +++
T Consensus 92 l~-~il--------------------~~l~-~~~ILFIDEIHRlnk~~qe~LlpamEd~~idiiiG~g~~ar~~~~~l~~ 149 (233)
T PF05496_consen 92 LA-AIL--------------------TNLK-EGDILFIDEIHRLNKAQQEILLPAMEDGKIDIIIGKGPNARSIRINLPP 149 (233)
T ss_dssp HH-HHH--------------------HT---TT-EEEECTCCC--HHHHHHHHHHHHCSEEEEEBSSSSS-BEEEEE---
T ss_pred HH-HHH--------------------HhcC-CCcEEEEechhhccHHHHHHHHHHhccCeEEEEeccccccceeeccCCC
Confidence 11 111 1122 3456777999643 3344444332211 222
Q ss_pred -CEEEEEeCCchhhhhcCCCccceEEcCCCChhhhHHHHhhhhccCCCCChhHHHHHHHHHHHcCCCchHHHHHhh
Q 002220 319 -SRIIITTRDKRILDDFGVCDTDIYEVNKLRFHEALVLFSNFAFKENQCPGDLLALLERVLKYANGNPLALRVLGS 393 (951)
Q Consensus 319 -s~IlvTtR~~~v~~~~~~~~~~~~~l~~L~~~~a~~Lf~~~~~~~~~~~~~~~~~~~~i~~~~~g~PLal~~~~~ 393 (951)
+-|=.|||...+..-..-.-.-+.+++..+.+|-.++..+.+..-.. +-.++.+.+|++.+.|-|--..-+-+
T Consensus 150 FTligATTr~g~ls~pLrdRFgi~~~l~~Y~~~el~~Iv~r~a~~l~i--~i~~~~~~~Ia~rsrGtPRiAnrll~ 223 (233)
T PF05496_consen 150 FTLIGATTRAGLLSSPLRDRFGIVLRLEFYSEEELAKIVKRSARILNI--EIDEDAAEEIARRSRGTPRIANRLLR 223 (233)
T ss_dssp -EEEEEESSGCCTSHCCCTTSSEEEE----THHHHHHHHHHCCHCTT---EE-HHHHHHHHHCTTTSHHHHHHHHH
T ss_pred ceEeeeeccccccchhHHhhcceecchhcCCHHHHHHHHHHHHHHhCC--CcCHHHHHHHHHhcCCChHHHHHHHH
Confidence 23446888765533221110134689999999999999887743222 23346789999999999965544433
No 61
>TIGR03420 DnaA_homol_Hda DnaA regulatory inactivator Hda. Members of this protein family are Hda (Homologous to DnaA). These proteins are about half the length of DnaA and homologous over length of Hda. In the model species Escherichia coli, the initiation of DNA replication requires DnaA bound to ATP rather than ADP; Hda helps facilitate the conversion of DnaA-ATP to DnaA-ADP.
Probab=98.52 E-value=1.2e-06 Score=90.28 Aligned_cols=173 Identities=18% Similarity=0.239 Sum_probs=100.1
Q ss_pred CCccc--chhhHHHHHHhhccCCCCcEEEEEEecCCChhHHHHHHHHHHhhccccceeecccccchhcCCCChHHHHHHH
Q 002220 186 DGFVG--LNSRIQKIKSLLCIGLPDFRTIGIWGMGGIGKTTLAGAVFKLISREFEGKCFMPNVREESENGGGLVYLRDRV 263 (951)
Q Consensus 186 ~~~vG--r~~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~l~~~i 263 (951)
++|++ .+..++.+.+++. ....+.+.|+|.+|+|||+||+.+++.........+|+... .... ....+
T Consensus 15 ~~~~~~~~~~~~~~l~~~~~--~~~~~~lll~G~~G~GKT~la~~~~~~~~~~~~~~~~i~~~-~~~~-------~~~~~ 84 (226)
T TIGR03420 15 DNFYAGGNAELLAALRQLAA--GKGDRFLYLWGESGSGKSHLLQAACAAAEERGKSAIYLPLA-ELAQ-------ADPEV 84 (226)
T ss_pred cCcCcCCcHHHHHHHHHHHh--cCCCCeEEEECCCCCCHHHHHHHHHHHHHhcCCcEEEEeHH-HHHH-------hHHHH
Confidence 45552 3446677777753 23457899999999999999999998765444445555311 1100 00011
Q ss_pred HHHHhcCccccCCCCChHHHHHHhcCCcEEEEEeCCCChH---H-HHHHHhccCC-CCCCCEEEEEeCCch---------
Q 002220 264 VSEIFQEDIKIGTPYLPDYIVERLNRMKVLTVLDDVNKVR---Q-LHYLACVLDQ-FGPGSRIIITTRDKR--------- 329 (951)
Q Consensus 264 l~~l~~~~~~~~~~~~~~~l~~~l~~~~~LlVlDdv~~~~---~-~~~l~~~~~~-~~~gs~IlvTtR~~~--------- 329 (951)
...+.+ .-+||+||++... . .+.+...+.. ...+.++|+||+...
T Consensus 85 --------------------~~~~~~-~~lLvIDdi~~l~~~~~~~~~L~~~l~~~~~~~~~iIits~~~~~~~~~~~~~ 143 (226)
T TIGR03420 85 --------------------LEGLEQ-ADLVCLDDVEAIAGQPEWQEALFHLYNRVREAGGRLLIAGRAAPAQLPLRLPD 143 (226)
T ss_pred --------------------Hhhccc-CCEEEEeChhhhcCChHHHHHHHHHHHHHHHcCCeEEEECCCChHHCCcccHH
Confidence 111122 2389999996432 2 2333332221 123457888887532
Q ss_pred hhhhcCCCccceEEcCCCChhhhHHHHhhhhccCCCCChhHHHHHHHHHHHcCCCchHHHHHhh
Q 002220 330 ILDDFGVCDTDIYEVNKLRFHEALVLFSNFAFKENQCPGDLLALLERVLKYANGNPLALRVLGS 393 (951)
Q Consensus 330 v~~~~~~~~~~~~~l~~L~~~~a~~Lf~~~~~~~~~~~~~~~~~~~~i~~~~~g~PLal~~~~~ 393 (951)
+...+... ..+++++++.++...++...+-..... --.+..+.+++.+.|+|..+..+..
T Consensus 144 L~~r~~~~--~~i~l~~l~~~e~~~~l~~~~~~~~~~--~~~~~l~~L~~~~~gn~r~L~~~l~ 203 (226)
T TIGR03420 144 LRTRLAWG--LVFQLPPLSDEEKIAALQSRAARRGLQ--LPDEVADYLLRHGSRDMGSLMALLD 203 (226)
T ss_pred HHHHHhcC--eeEecCCCCHHHHHHHHHHHHHHcCCC--CCHHHHHHHHHhccCCHHHHHHHHH
Confidence 12222212 579999999999999988755322111 1124567777788888877766543
No 62
>PRK15386 type III secretion protein GogB; Provisional
Probab=98.51 E-value=5e-07 Score=97.06 Aligned_cols=158 Identities=24% Similarity=0.353 Sum_probs=82.6
Q ss_pred ccCCCCcEEecccccccccccccccCCCCCCEEeccCCCCCCccchhcccCCCCcEEEcccC-CCcccCccccCCCCCcE
Q 002220 742 ECLTNLETLDLRLCERLKRVSTSICKLKSLGSLLLAFCSNLEGFPEILEKMELLETLDLERT-GVKELPPSFENLQGLRQ 820 (951)
Q Consensus 742 ~~l~~L~~L~Ls~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~n-~i~~l~~~~~~l~~L~~ 820 (951)
..+.+++.|++++| .+..+|. -..+|++|.+++|..+..+|+.+ .++|+.|++++| .+..+|. +|+.
T Consensus 49 ~~~~~l~~L~Is~c-~L~sLP~---LP~sLtsL~Lsnc~nLtsLP~~L--P~nLe~L~Ls~Cs~L~sLP~------sLe~ 116 (426)
T PRK15386 49 EEARASGRLYIKDC-DIESLPV---LPNELTEITIENCNNLTTLPGSI--PEGLEKLTVCHCPEISGLPE------SVRS 116 (426)
T ss_pred HHhcCCCEEEeCCC-CCcccCC---CCCCCcEEEccCCCCcccCCchh--hhhhhheEccCccccccccc------ccce
Confidence 34566666666666 3344441 12356667776666666666543 346777777666 4444442 4555
Q ss_pred EeeccCCCCccCCcccCCcCCCCCCCCEEeccCCC-CC--CcCccCCCCCCCCEEEccCCCCcccchhhcCCCCCCEEee
Q 002220 821 LSLIGCSELKCSGWVLPTRISKLSSLERLQLSGCE-IK--EIPEDIDCLSSLEVLDLSGSKIEILPTSIGQLSRLRQLNL 897 (951)
Q Consensus 821 L~l~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~-l~--~l~~~l~~l~~L~~L~L~~n~l~~l~~~l~~l~~L~~L~L 897 (951)
|++..+...... .+|. +|+.|.+.+++ .. .+|. .-+++|++|++++|....+|..+. .+|+.|.+
T Consensus 117 L~L~~n~~~~L~--~LPs------sLk~L~I~~~n~~~~~~lp~--~LPsSLk~L~Is~c~~i~LP~~LP--~SLk~L~l 184 (426)
T PRK15386 117 LEIKGSATDSIK--NVPN------GLTSLSINSYNPENQARIDN--LISPSLKTLSLTGCSNIILPEKLP--ESLQSITL 184 (426)
T ss_pred EEeCCCCCcccc--cCcc------hHhheecccccccccccccc--ccCCcccEEEecCCCcccCccccc--ccCcEEEe
Confidence 666543322211 1332 45666664332 11 1121 123567777777776555554332 47777777
Q ss_pred CCCCCC--C-cCCCccccccEeeeccCccc
Q 002220 898 LDCNML--Q-SIPELPRGLLRLNAQNCRRL 924 (951)
Q Consensus 898 ~~~~~l--~-~lp~~~~~L~~L~i~~C~~L 924 (951)
+.|... . ..+.+|+++ .|.+.+|-.+
T Consensus 185 s~n~~~sLeI~~~sLP~nl-~L~f~n~lkL 213 (426)
T PRK15386 185 HIEQKTTWNISFEGFPDGL-DIDLQNSVLL 213 (426)
T ss_pred cccccccccCccccccccc-Eechhhhccc
Confidence 654311 1 122466677 7777777443
No 63
>PRK07471 DNA polymerase III subunit delta'; Validated
Probab=98.50 E-value=1.3e-05 Score=87.28 Aligned_cols=202 Identities=13% Similarity=0.085 Sum_probs=113.1
Q ss_pred cCCCCCCcccchhhHHHHHHhhccCCCCcEEEEEEecCCChhHHHHHHHHHHhhcc--ccceeecccccchhcCCCChHH
Q 002220 181 ASTYSDGFVGLNSRIQKIKSLLCIGLPDFRTIGIWGMGGIGKTTLAGAVFKLISRE--FEGKCFMPNVREESENGGGLVY 258 (951)
Q Consensus 181 ~~~~~~~~vGr~~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~~~~~~~~~--f~~~~~~~~~~~~~~~~~~~~~ 258 (951)
.|....+++|.+...+.|.+.+..+ .-...+.++|+.|+||+|+|..+++.+-.+ ......-..... .. ..+.-.
T Consensus 14 ~P~~~~~iiGq~~~~~~L~~~~~~~-rl~HA~Lf~Gp~G~GK~~lA~~~A~~Llc~~~~~~~~~~~~~~~-l~-~~~~c~ 90 (365)
T PRK07471 14 HPRETTALFGHAAAEAALLDAYRSG-RLHHAWLIGGPQGIGKATLAYRMARFLLATPPPGGDGAVPPPTS-LA-IDPDHP 90 (365)
T ss_pred CCCchhhccChHHHHHHHHHHHHcC-CCCceEEEECCCCCCHHHHHHHHHHHHhCCCCCCCCcccccccc-cc-CCCCCh
Confidence 3455678999999999999988643 234678899999999999999999865211 010000000000 00 000000
Q ss_pred HHHHHHHHHhcC------ccccC----CCCCh-HHHHHHh--------cCCcEEEEEeCCCC--hHHHHHHHhccCCCCC
Q 002220 259 LRDRVVSEIFQE------DIKIG----TPYLP-DYIVERL--------NRMKVLTVLDDVNK--VRQLHYLACVLDQFGP 317 (951)
Q Consensus 259 l~~~il~~l~~~------~~~~~----~~~~~-~~l~~~l--------~~~~~LlVlDdv~~--~~~~~~l~~~~~~~~~ 317 (951)
..+.+....... ..... ..... +.+++.. .+++.++|+|+++. ......++..+.....
T Consensus 91 ~c~~i~~~~HPDl~~i~~~~~~~~~~~~~~I~VdqiR~l~~~~~~~~~~~~~kVviIDead~m~~~aanaLLK~LEepp~ 170 (365)
T PRK07471 91 VARRIAAGAHGGLLTLERSWNEKGKRLRTVITVDEVRELISFFGLTAAEGGWRVVIVDTADEMNANAANALLKVLEEPPA 170 (365)
T ss_pred HHHHHHccCCCCeEEEecccccccccccccccHHHHHHHHHHhCcCcccCCCEEEEEechHhcCHHHHHHHHHHHhcCCC
Confidence 111111100000 00000 00111 3444332 24567899999964 3446666666655455
Q ss_pred CCEEEEEeCCch-hhhhcCCCccceEEcCCCChhhhHHHHhhhhccCCCCChhHHHHHHHHHHHcCCCchHHHHHh
Q 002220 318 GSRIIITTRDKR-ILDDFGVCDTDIYEVNKLRFHEALVLFSNFAFKENQCPGDLLALLERVLKYANGNPLALRVLG 392 (951)
Q Consensus 318 gs~IlvTtR~~~-v~~~~~~~~~~~~~l~~L~~~~a~~Lf~~~~~~~~~~~~~~~~~~~~i~~~~~g~PLal~~~~ 392 (951)
++.+|++|.+.. +.... ......+.+.+++.++..+++...... ..+ +....++..++|.|+....+.
T Consensus 171 ~~~~IL~t~~~~~llpti-~SRc~~i~l~~l~~~~i~~~L~~~~~~---~~~---~~~~~l~~~s~Gsp~~Al~ll 239 (365)
T PRK07471 171 RSLFLLVSHAPARLLPTI-RSRCRKLRLRPLAPEDVIDALAAAGPD---LPD---DPRAALAALAEGSVGRALRLA 239 (365)
T ss_pred CeEEEEEECCchhchHHh-hccceEEECCCCCHHHHHHHHHHhccc---CCH---HHHHHHHHHcCCCHHHHHHHh
Confidence 676777776653 32221 112278999999999999999876421 111 222678999999998665553
No 64
>PRK14961 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.48 E-value=8.8e-06 Score=89.58 Aligned_cols=187 Identities=16% Similarity=0.156 Sum_probs=108.6
Q ss_pred CCCCCCcccchhhHHHHHHhhccCCCCcEEEEEEecCCChhHHHHHHHHHHhhccccc---eeecc------------cc
Q 002220 182 STYSDGFVGLNSRIQKIKSLLCIGLPDFRTIGIWGMGGIGKTTLAGAVFKLISREFEG---KCFMP------------NV 246 (951)
Q Consensus 182 ~~~~~~~vGr~~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~~~~~~~~~f~~---~~~~~------------~~ 246 (951)
|...++++|.+.-++.+...+..+ .-.+.+.++|+.|+||||+|+.+++.+...... -|-.+ ++
T Consensus 12 P~~~~~iiGq~~~~~~l~~~~~~~-~~~h~~L~~Gp~G~GKTtla~~la~~l~c~~~~~~~pc~~c~~c~~~~~~~~~d~ 90 (363)
T PRK14961 12 PQYFRDIIGQKHIVTAISNGLSLG-RIHHAWLLSGTRGVGKTTIARLLAKSLNCQNGITSNPCRKCIICKEIEKGLCLDL 90 (363)
T ss_pred CCchhhccChHHHHHHHHHHHHcC-CCCeEEEEecCCCCCHHHHHHHHHHHhcCCCCCCCCCCCCCHHHHHHhcCCCCce
Confidence 344568999999999999988643 234678999999999999999999865321110 00000 00
Q ss_pred cchhcC-CCChHHHHHHHHHHHhcCccccCCCCChHHHHHHhcCCcEEEEEeCCCChH--HHHHHHhccCCCCCCCEEEE
Q 002220 247 REESEN-GGGLVYLRDRVVSEIFQEDIKIGTPYLPDYIVERLNRMKVLTVLDDVNKVR--QLHYLACVLDQFGPGSRIII 323 (951)
Q Consensus 247 ~~~~~~-~~~~~~l~~~il~~l~~~~~~~~~~~~~~~l~~~l~~~~~LlVlDdv~~~~--~~~~l~~~~~~~~~gs~Ilv 323 (951)
.+.... ...+.. .+.+...+... -..+++-++|+|+++... .++.+...+....+..++|+
T Consensus 91 ~~~~~~~~~~v~~-ir~i~~~~~~~---------------p~~~~~kviIIDEa~~l~~~a~naLLk~lEe~~~~~~fIl 154 (363)
T PRK14961 91 IEIDAASRTKVEE-MREILDNIYYS---------------PSKSRFKVYLIDEVHMLSRHSFNALLKTLEEPPQHIKFIL 154 (363)
T ss_pred EEecccccCCHHH-HHHHHHHHhcC---------------cccCCceEEEEEChhhcCHHHHHHHHHHHhcCCCCeEEEE
Confidence 000000 001111 11111111000 012345699999997554 36667666665556667777
Q ss_pred EeCCc-hhhhhcCCCccceEEcCCCChhhhHHHHhhhhccCCCCChhHHHHHHHHHHHcCCCchHH
Q 002220 324 TTRDK-RILDDFGVCDTDIYEVNKLRFHEALVLFSNFAFKENQCPGDLLALLERVLKYANGNPLAL 388 (951)
Q Consensus 324 TtR~~-~v~~~~~~~~~~~~~l~~L~~~~a~~Lf~~~~~~~~~~~~~~~~~~~~i~~~~~g~PLal 388 (951)
+|.+. .+..... .....+++++++.++..+.+...+-...... ..+.++.|++.++|.|-.+
T Consensus 155 ~t~~~~~l~~tI~-SRc~~~~~~~l~~~el~~~L~~~~~~~g~~i--~~~al~~ia~~s~G~~R~a 217 (363)
T PRK14961 155 ATTDVEKIPKTIL-SRCLQFKLKIISEEKIFNFLKYILIKESIDT--DEYALKLIAYHAHGSMRDA 217 (363)
T ss_pred EcCChHhhhHHHH-hhceEEeCCCCCHHHHHHHHHHHHHHcCCCC--CHHHHHHHHHHcCCCHHHH
Confidence 66543 3322211 1126899999999999998887664322111 1245678889999988543
No 65
>PRK07003 DNA polymerase III subunits gamma and tau; Validated
Probab=98.47 E-value=6.8e-06 Score=94.31 Aligned_cols=195 Identities=16% Similarity=0.155 Sum_probs=110.5
Q ss_pred CCCCCCcccchhhHHHHHHhhccCCCCcEEEEEEecCCChhHHHHHHHHHHhhccccceeecccccchhcCCCChHHHHH
Q 002220 182 STYSDGFVGLNSRIQKIKSLLCIGLPDFRTIGIWGMGGIGKTTLAGAVFKLISREFEGKCFMPNVREESENGGGLVYLRD 261 (951)
Q Consensus 182 ~~~~~~~vGr~~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~l~~ 261 (951)
|...+++||.+..++.|.+++..+ .-.+.+.++|..|+||||+|+.+++.+-..-. .-... .+.-....
T Consensus 12 PqtFdEVIGQe~Vv~~L~~aL~~g-RL~HAyLFtGPpGvGKTTlAriLAKaLnCe~~-~~~~P---------CG~C~sCr 80 (830)
T PRK07003 12 PKDFASLVGQEHVVRALTHALDGG-RLHHAYLFTGTRGVGKTTLSRIFAKALNCETG-VTSQP---------CGVCRACR 80 (830)
T ss_pred CCcHHHHcCcHHHHHHHHHHHhcC-CCCeEEEEECCCCCCHHHHHHHHHHHhcCccC-CCCCC---------CcccHHHH
Confidence 344568999999999999998643 23456779999999999999999986532100 00000 00000000
Q ss_pred HHHHHHhcCccccCC-CCCh-HHHHHHh--------cCCcEEEEEeCCCChH--HHHHHHhccCCCCCCCEEEEEeCCch
Q 002220 262 RVVSEIFQEDIKIGT-PYLP-DYIVERL--------NRMKVLTVLDDVNKVR--QLHYLACVLDQFGPGSRIIITTRDKR 329 (951)
Q Consensus 262 ~il~~l~~~~~~~~~-~~~~-~~l~~~l--------~~~~~LlVlDdv~~~~--~~~~l~~~~~~~~~gs~IlvTtR~~~ 329 (951)
.+...-...-..... .... +.+++.+ .++.-++|||+++... .++.++..+.......++|+||.+..
T Consensus 81 ~I~~G~h~DviEIDAas~rgVDdIReLIe~a~~~P~~gr~KVIIIDEah~LT~~A~NALLKtLEEPP~~v~FILaTtd~~ 160 (830)
T PRK07003 81 EIDEGRFVDYVEMDAASNRGVDEMAALLERAVYAPVDARFKVYMIDEVHMLTNHAFNAMLKTLEEPPPHVKFILATTDPQ 160 (830)
T ss_pred HHhcCCCceEEEecccccccHHHHHHHHHHHHhccccCCceEEEEeChhhCCHHHHHHHHHHHHhcCCCeEEEEEECChh
Confidence 000000000000000 0000 1122111 2345588899997554 36777766665566788888777653
Q ss_pred h-hhhcCCCccceEEcCCCChhhhHHHHhhhhccCCCCChhHHHHHHHHHHHcCCCc-hHHHH
Q 002220 330 I-LDDFGVCDTDIYEVNKLRFHEALVLFSNFAFKENQCPGDLLALLERVLKYANGNP-LALRV 390 (951)
Q Consensus 330 v-~~~~~~~~~~~~~l~~L~~~~a~~Lf~~~~~~~~~~~~~~~~~~~~i~~~~~g~P-Lal~~ 390 (951)
- .... ...+..+.++.++.++..+.+.+.+..+.... ..+..+.|++.++|.. -|+..
T Consensus 161 KIp~TI-rSRCq~f~Fk~Ls~eeIv~~L~~Il~~EgI~i--d~eAL~lIA~~A~GsmRdALsL 220 (830)
T PRK07003 161 KIPVTV-LSRCLQFNLKQMPAGHIVSHLERILGEERIAF--EPQALRLLARAAQGSMRDALSL 220 (830)
T ss_pred hccchh-hhheEEEecCCcCHHHHHHHHHHHHHHcCCCC--CHHHHHHHHHHcCCCHHHHHHH
Confidence 2 2111 11127899999999999999988764332211 2356778888998865 34443
No 66
>PRK12402 replication factor C small subunit 2; Reviewed
Probab=98.45 E-value=3.2e-06 Score=93.10 Aligned_cols=197 Identities=17% Similarity=0.150 Sum_probs=106.2
Q ss_pred CCCCCCcccchhhHHHHHHhhccCCCCcEEEEEEecCCChhHHHHHHHHHHhhccc-cc-eeecccccchhcCCCChHHH
Q 002220 182 STYSDGFVGLNSRIQKIKSLLCIGLPDFRTIGIWGMGGIGKTTLAGAVFKLISREF-EG-KCFMPNVREESENGGGLVYL 259 (951)
Q Consensus 182 ~~~~~~~vGr~~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~~~~~~~~~f-~~-~~~~~~~~~~~~~~~~~~~l 259 (951)
|...+.++|++..++.+..++..+ ..+.+.++|++|+||||+|+.+++.+.... .. .+++.. .+... . ....+
T Consensus 11 P~~~~~~~g~~~~~~~L~~~~~~~--~~~~lll~Gp~GtGKT~la~~~~~~l~~~~~~~~~~~i~~-~~~~~-~-~~~~~ 85 (337)
T PRK12402 11 PALLEDILGQDEVVERLSRAVDSP--NLPHLLVQGPPGSGKTAAVRALARELYGDPWENNFTEFNV-ADFFD-Q-GKKYL 85 (337)
T ss_pred CCcHHHhcCCHHHHHHHHHHHhCC--CCceEEEECCCCCCHHHHHHHHHHHhcCcccccceEEech-hhhhh-c-chhhh
Confidence 334567999999999999988543 334678999999999999999998764332 21 223321 11000 0 00000
Q ss_pred HH--HHHHHHhcCccccCCCCChHHHHHHh---------cCCcEEEEEeCCCChH--HHHHHHhccCCCCCCCEEEEEeC
Q 002220 260 RD--RVVSEIFQEDIKIGTPYLPDYIVERL---------NRMKVLTVLDDVNKVR--QLHYLACVLDQFGPGSRIIITTR 326 (951)
Q Consensus 260 ~~--~il~~l~~~~~~~~~~~~~~~l~~~l---------~~~~~LlVlDdv~~~~--~~~~l~~~~~~~~~gs~IlvTtR 326 (951)
.. ...... ... ........+.+++.+ ...+-++|+||++... ..+.+...+......+++|+|+.
T Consensus 86 ~~~~~~~~~~-~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vlilDe~~~l~~~~~~~L~~~le~~~~~~~~Il~~~ 163 (337)
T PRK12402 86 VEDPRFAHFL-GTD-KRIRSSKIDNFKHVLKEYASYRPLSADYKTILLDNAEALREDAQQALRRIMEQYSRTCRFIIATR 163 (337)
T ss_pred hcCcchhhhh-hhh-hhhccchHHHHHHHHHHHHhcCCCCCCCcEEEEeCcccCCHHHHHHHHHHHHhccCCCeEEEEeC
Confidence 00 000000 000 000000011222111 1334589999997542 23444444433345677887775
Q ss_pred Cc-hhhhhcCCCccceEEcCCCChhhhHHHHhhhhccCCCCChhHHHHHHHHHHHcCCCchHH
Q 002220 327 DK-RILDDFGVCDTDIYEVNKLRFHEALVLFSNFAFKENQCPGDLLALLERVLKYANGNPLAL 388 (951)
Q Consensus 327 ~~-~v~~~~~~~~~~~~~l~~L~~~~a~~Lf~~~~~~~~~~~~~~~~~~~~i~~~~~g~PLal 388 (951)
.. .+..... .....+++.+++.++..+++.+.+-..... -..+.++.+++.++|.+-.+
T Consensus 164 ~~~~~~~~L~-sr~~~v~~~~~~~~~~~~~l~~~~~~~~~~--~~~~al~~l~~~~~gdlr~l 223 (337)
T PRK12402 164 QPSKLIPPIR-SRCLPLFFRAPTDDELVDVLESIAEAEGVD--YDDDGLELIAYYAGGDLRKA 223 (337)
T ss_pred ChhhCchhhc-CCceEEEecCCCHHHHHHHHHHHHHHcCCC--CCHHHHHHHHHHcCCCHHHH
Confidence 43 2222211 112578999999999999998876432221 11356778888888876544
No 67
>PRK14963 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.43 E-value=2.6e-06 Score=96.65 Aligned_cols=193 Identities=16% Similarity=0.075 Sum_probs=111.2
Q ss_pred CCCCCCcccchhhHHHHHHhhccCCCCcEEEEEEecCCChhHHHHHHHHHHhhc--cccceeecccccchh--cCCCChH
Q 002220 182 STYSDGFVGLNSRIQKIKSLLCIGLPDFRTIGIWGMGGIGKTTLAGAVFKLISR--EFEGKCFMPNVREES--ENGGGLV 257 (951)
Q Consensus 182 ~~~~~~~vGr~~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~~~~~~~~--~f~~~~~~~~~~~~~--~~~~~~~ 257 (951)
|...++++|.+...+.|..++..+. -...+.++|++|+||||+|+.+++.+.. .+...|+.+...... ....++.
T Consensus 10 P~~~~dvvGq~~v~~~L~~~i~~~~-l~ha~Lf~GppGtGKTTlA~~lA~~l~c~~~~~~~cg~C~sc~~i~~~~h~dv~ 88 (504)
T PRK14963 10 PITFDEVVGQEHVKEVLLAALRQGR-LGHAYLFSGPRGVGKTTTARLIAMAVNCSGEDPKPCGECESCLAVRRGAHPDVL 88 (504)
T ss_pred CCCHHHhcChHHHHHHHHHHHHcCC-CCeEEEEECCCCCCHHHHHHHHHHHHhccCCCCCCCCcChhhHHHhcCCCCceE
Confidence 3445678999999999988886432 3466799999999999999999986532 222234432100000 0000000
Q ss_pred HHHHHHHHHHhcCccccCCCCChHHHHHHh-----cCCcEEEEEeCCCCh--HHHHHHHhccCCCCCCCEEEEEeCC-ch
Q 002220 258 YLRDRVVSEIFQEDIKIGTPYLPDYIVERL-----NRMKVLTVLDDVNKV--RQLHYLACVLDQFGPGSRIIITTRD-KR 329 (951)
Q Consensus 258 ~l~~~il~~l~~~~~~~~~~~~~~~l~~~l-----~~~~~LlVlDdv~~~--~~~~~l~~~~~~~~~gs~IlvTtR~-~~ 329 (951)
. +... .....+....+.+.+ .+++-++|+|+++.. ..++.+...+....+.+.+|++|.. ..
T Consensus 89 e--------l~~~--~~~~vd~iR~l~~~~~~~p~~~~~kVVIIDEad~ls~~a~naLLk~LEep~~~t~~Il~t~~~~k 158 (504)
T PRK14963 89 E--------IDAA--SNNSVEDVRDLREKVLLAPLRGGRKVYILDEAHMMSKSAFNALLKTLEEPPEHVIFILATTEPEK 158 (504)
T ss_pred E--------eccc--ccCCHHHHHHHHHHHhhccccCCCeEEEEECccccCHHHHHHHHHHHHhCCCCEEEEEEcCChhh
Confidence 0 0000 000000001122211 245668999999744 4466777666554555566655543 33
Q ss_pred hhhhcCCCccceEEcCCCChhhhHHHHhhhhccCCCCChhHHHHHHHHHHHcCCCchHH
Q 002220 330 ILDDFGVCDTDIYEVNKLRFHEALVLFSNFAFKENQCPGDLLALLERVLKYANGNPLAL 388 (951)
Q Consensus 330 v~~~~~~~~~~~~~l~~L~~~~a~~Lf~~~~~~~~~~~~~~~~~~~~i~~~~~g~PLal 388 (951)
+..... .....+++.+++.++..+.+.+.+-...... ..+.+..|++.++|.+--+
T Consensus 159 l~~~I~-SRc~~~~f~~ls~~el~~~L~~i~~~egi~i--~~~Al~~ia~~s~GdlR~a 214 (504)
T PRK14963 159 MPPTIL-SRTQHFRFRRLTEEEIAGKLRRLLEAEGREA--EPEALQLVARLADGAMRDA 214 (504)
T ss_pred CChHHh-cceEEEEecCCCHHHHHHHHHHHHHHcCCCC--CHHHHHHHHHHcCCCHHHH
Confidence 322221 1126899999999999999988774333211 2256788999999988544
No 68
>KOG4341 consensus F-box protein containing LRR [General function prediction only]
Probab=98.42 E-value=1.3e-08 Score=105.88 Aligned_cols=272 Identities=18% Similarity=0.232 Sum_probs=166.4
Q ss_pred ccccccceeccCCCCCCCcCC--CCC-CCCCCcEEecCCCCCCCccC--cccccCCcccEEeccCCCCCcccC--CC-CC
Q 002220 628 KEAFKLKFIDLHDSHNLTSIP--EPL-EAPNLERINLCNCTNLSYIP--LYVQNFHNLGSLSLKGCKSLRCFP--RN-IH 699 (951)
Q Consensus 628 ~~l~~L~~L~L~~~~~~~~~~--~~~-~l~~L~~L~L~~~~~~~~~~--~~~~~l~~L~~L~L~~~~~l~~l~--~~-~~ 699 (951)
.++++++.|++.+|..++... .+. .+++|++|++..|..++... .....+++|++|+++.|+.+..-. .. -+
T Consensus 161 ~~CpnIehL~l~gc~~iTd~s~~sla~~C~~l~~l~L~~c~~iT~~~Lk~la~gC~kL~~lNlSwc~qi~~~gv~~~~rG 240 (483)
T KOG4341|consen 161 SNCPNIEHLALYGCKKITDSSLLSLARYCRKLRHLNLHSCSSITDVSLKYLAEGCRKLKYLNLSWCPQISGNGVQALQRG 240 (483)
T ss_pred hhCCchhhhhhhcceeccHHHHHHHHHhcchhhhhhhcccchhHHHHHHHHHHhhhhHHHhhhccCchhhcCcchHHhcc
Confidence 455666666666665433222 222 56667777777665554322 123456677777777776655411 00 04
Q ss_pred CCCCceeeCcCCCCCCCC-----CccccceeeccccCC-CCCccC--cccccCCCCcEEeccccccccccc--ccccCCC
Q 002220 700 FRSPIEIDCAWCVNLTEF-----PQISGKVVKLRLWYT-PIEEVP--SSIECLTNLETLDLRLCERLKRVS--TSICKLK 769 (951)
Q Consensus 700 l~~L~~L~l~~~~~l~~l-----~~~~~~L~~L~l~~~-~l~~lp--~~l~~l~~L~~L~Ls~~~~~~~~~--~~~~~l~ 769 (951)
+..++.+...||..+..- ...-.-+.++++..+ .+++.. ..-..+..|+.|+.++|...+..+ .-..+.+
T Consensus 241 ~~~l~~~~~kGC~e~~le~l~~~~~~~~~i~~lnl~~c~~lTD~~~~~i~~~c~~lq~l~~s~~t~~~d~~l~aLg~~~~ 320 (483)
T KOG4341|consen 241 CKELEKLSLKGCLELELEALLKAAAYCLEILKLNLQHCNQLTDEDLWLIACGCHALQVLCYSSCTDITDEVLWALGQHCH 320 (483)
T ss_pred chhhhhhhhcccccccHHHHHHHhccChHhhccchhhhccccchHHHHHhhhhhHhhhhcccCCCCCchHHHHHHhcCCC
Confidence 455666666666544321 011112334443333 222211 112357889999999997755432 2234779
Q ss_pred CCCEEeccCCCCCCccc--hhcccCCCCcEEEcccCCCc---ccCccccCCCCCcEEeeccCCCCccCCcc-cCCcCCCC
Q 002220 770 SLGSLLLAFCSNLEGFP--EILEKMELLETLDLERTGVK---ELPPSFENLQGLRQLSLIGCSELKCSGWV-LPTRISKL 843 (951)
Q Consensus 770 ~L~~L~l~~~~~~~~~~--~~l~~l~~L~~L~l~~n~i~---~l~~~~~~l~~L~~L~l~~~~~~~~~~~~-~~~~~~~l 843 (951)
+|+.|-+..|+..+..- ..-.+.+.|+.+++..+... ++-..-.+++.|+.|.++.|......|.. +...-.++
T Consensus 321 ~L~~l~l~~c~~fsd~~ft~l~rn~~~Le~l~~e~~~~~~d~tL~sls~~C~~lr~lslshce~itD~gi~~l~~~~c~~ 400 (483)
T KOG4341|consen 321 NLQVLELSGCQQFSDRGFTMLGRNCPHLERLDLEECGLITDGTLASLSRNCPRLRVLSLSHCELITDEGIRHLSSSSCSL 400 (483)
T ss_pred ceEEEeccccchhhhhhhhhhhcCChhhhhhcccccceehhhhHhhhccCCchhccCChhhhhhhhhhhhhhhhhccccc
Confidence 99999999998765532 22246788999999887664 23333467899999999999877754321 22334567
Q ss_pred CCCCEEeccCCCCCC--cCccCCCCCCCCEEEccCC-CCcc--cchhhcCCCCCCEEeeCC
Q 002220 844 SSLERLQLSGCEIKE--IPEDIDCLSSLEVLDLSGS-KIEI--LPTSIGQLSRLRQLNLLD 899 (951)
Q Consensus 844 ~~L~~L~L~~~~l~~--l~~~l~~l~~L~~L~L~~n-~l~~--l~~~l~~l~~L~~L~L~~ 899 (951)
..|+.|.|++|+... ..+.+..+++|+.+++-+| .++. +...-.++|+++...+-.
T Consensus 401 ~~l~~lEL~n~p~i~d~~Le~l~~c~~Leri~l~~~q~vtk~~i~~~~~~lp~i~v~a~~a 461 (483)
T KOG4341|consen 401 EGLEVLELDNCPLITDATLEHLSICRNLERIELIDCQDVTKEAISRFATHLPNIKVHAYFA 461 (483)
T ss_pred cccceeeecCCCCchHHHHHHHhhCcccceeeeechhhhhhhhhHHHHhhCccceehhhcc
Confidence 789999999998774 4566778889999999998 4443 334456788888776643
No 69
>PLN03025 replication factor C subunit; Provisional
Probab=98.42 E-value=5.1e-06 Score=90.02 Aligned_cols=183 Identities=16% Similarity=0.213 Sum_probs=105.2
Q ss_pred CCCCCCcccchhhHHHHHHhhccCCCCcEEEEEEecCCChhHHHHHHHHHHhh-ccccceeecccccchhcCCCChHHHH
Q 002220 182 STYSDGFVGLNSRIQKIKSLLCIGLPDFRTIGIWGMGGIGKTTLAGAVFKLIS-REFEGKCFMPNVREESENGGGLVYLR 260 (951)
Q Consensus 182 ~~~~~~~vGr~~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~~~~~~~-~~f~~~~~~~~~~~~~~~~~~~~~l~ 260 (951)
|..-++++|.++.++.|..++..+ ..+.+.++|++|+||||+|+.+++.+. ..|...+.-.+. ++ ..+...+
T Consensus 9 P~~l~~~~g~~~~~~~L~~~~~~~--~~~~lll~Gp~G~GKTtla~~la~~l~~~~~~~~~~eln~---sd-~~~~~~v- 81 (319)
T PLN03025 9 PTKLDDIVGNEDAVSRLQVIARDG--NMPNLILSGPPGTGKTTSILALAHELLGPNYKEAVLELNA---SD-DRGIDVV- 81 (319)
T ss_pred CCCHHHhcCcHHHHHHHHHHHhcC--CCceEEEECCCCCCHHHHHHHHHHHHhcccCccceeeecc---cc-cccHHHH-
Confidence 444567899999888888887532 334577999999999999999998753 333322111111 11 1222222
Q ss_pred HHHHHHHhcCccccCCCCChHHHHHHhcCCcEEEEEeCCCChH--HHHHHHhccCCCCCCCEEEEEeCCc-hhhhhcCCC
Q 002220 261 DRVVSEIFQEDIKIGTPYLPDYIVERLNRMKVLTVLDDVNKVR--QLHYLACVLDQFGPGSRIIITTRDK-RILDDFGVC 337 (951)
Q Consensus 261 ~~il~~l~~~~~~~~~~~~~~~l~~~l~~~~~LlVlDdv~~~~--~~~~l~~~~~~~~~gs~IlvTtR~~-~v~~~~~~~ 337 (951)
+..+.......... -.++.-++|+|+++... ..+.+...+...+..+++++++... .+......
T Consensus 82 r~~i~~~~~~~~~~------------~~~~~kviiiDE~d~lt~~aq~aL~~~lE~~~~~t~~il~~n~~~~i~~~L~S- 148 (319)
T PLN03025 82 RNKIKMFAQKKVTL------------PPGRHKIVILDEADSMTSGAQQALRRTMEIYSNTTRFALACNTSSKIIEPIQS- 148 (319)
T ss_pred HHHHHHHHhccccC------------CCCCeEEEEEechhhcCHHHHHHHHHHHhcccCCceEEEEeCCccccchhHHH-
Confidence 22222211110000 01345689999997543 3344444444445667777776543 22111100
Q ss_pred ccceEEcCCCChhhhHHHHhhhhccCCCCChhHHHHHHHHHHHcCCCch
Q 002220 338 DTDIYEVNKLRFHEALVLFSNFAFKENQCPGDLLALLERVLKYANGNPL 386 (951)
Q Consensus 338 ~~~~~~l~~L~~~~a~~Lf~~~~~~~~~~~~~~~~~~~~i~~~~~g~PL 386 (951)
....+++++++.++..+.+.+.+-.....-+ .+....|++.++|..-
T Consensus 149 Rc~~i~f~~l~~~~l~~~L~~i~~~egi~i~--~~~l~~i~~~~~gDlR 195 (319)
T PLN03025 149 RCAIVRFSRLSDQEILGRLMKVVEAEKVPYV--PEGLEAIIFTADGDMR 195 (319)
T ss_pred hhhcccCCCCCHHHHHHHHHHHHHHcCCCCC--HHHHHHHHHHcCCCHH
Confidence 1167999999999999988887643322111 2456788888888753
No 70
>PF13173 AAA_14: AAA domain
Probab=98.42 E-value=1.8e-06 Score=79.63 Aligned_cols=121 Identities=22% Similarity=0.205 Sum_probs=76.8
Q ss_pred cEEEEEEecCCChhHHHHHHHHHHhhccccceeecccccchhcCCCChHHHHHHHHHHHhcCccccCCCCChHHHHHHhc
Q 002220 209 FRTIGIWGMGGIGKTTLAGAVFKLISREFEGKCFMPNVREESENGGGLVYLRDRVVSEIFQEDIKIGTPYLPDYIVERLN 288 (951)
Q Consensus 209 ~~vv~I~G~gGiGKTtLA~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~l~~~il~~l~~~~~~~~~~~~~~~l~~~l~ 288 (951)
.+++.|.|+.|+||||+++++++... .-..++|+..-. .. .......+ ..+.+.+...
T Consensus 2 ~~~~~l~G~R~vGKTtll~~~~~~~~-~~~~~~yi~~~~--------~~-~~~~~~~~------------~~~~~~~~~~ 59 (128)
T PF13173_consen 2 RKIIILTGPRGVGKTTLLKQLAKDLL-PPENILYINFDD--------PR-DRRLADPD------------LLEYFLELIK 59 (128)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHhc-ccccceeeccCC--------HH-HHHHhhhh------------hHHHHHHhhc
Confidence 36899999999999999999998665 223445553111 11 10000000 1133333344
Q ss_pred CCcEEEEEeCCCChHHHHHHHhccCCCCCCCEEEEEeCCchhhhhc----CCCccceEEcCCCChhh
Q 002220 289 RMKVLTVLDDVNKVRQLHYLACVLDQFGPGSRIIITTRDKRILDDF----GVCDTDIYEVNKLRFHE 351 (951)
Q Consensus 289 ~~~~LlVlDdv~~~~~~~~l~~~~~~~~~gs~IlvTtR~~~v~~~~----~~~~~~~~~l~~L~~~~ 351 (951)
.++.+++||++.....|......+...++..+|++|+.+....... -......+++.||+-.|
T Consensus 60 ~~~~~i~iDEiq~~~~~~~~lk~l~d~~~~~~ii~tgS~~~~l~~~~~~~l~gr~~~~~l~Plsf~E 126 (128)
T PF13173_consen 60 PGKKYIFIDEIQYLPDWEDALKFLVDNGPNIKIILTGSSSSLLSKDIAESLAGRVIEIELYPLSFRE 126 (128)
T ss_pred cCCcEEEEehhhhhccHHHHHHHHHHhccCceEEEEccchHHHhhcccccCCCeEEEEEECCCCHHH
Confidence 4788999999988888877766665555678999999887665321 11222568999998776
No 71
>PRK04195 replication factor C large subunit; Provisional
Probab=98.41 E-value=8.7e-06 Score=93.36 Aligned_cols=181 Identities=17% Similarity=0.172 Sum_probs=106.8
Q ss_pred CCCCCCcccchhhHHHHHHhhccC--CCCcEEEEEEecCCChhHHHHHHHHHHhhccccceeecccccchhcCCCChHHH
Q 002220 182 STYSDGFVGLNSRIQKIKSLLCIG--LPDFRTIGIWGMGGIGKTTLAGAVFKLISREFEGKCFMPNVREESENGGGLVYL 259 (951)
Q Consensus 182 ~~~~~~~vGr~~~~~~l~~~L~~~--~~~~~vv~I~G~gGiGKTtLA~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~l 259 (951)
|....+++|.+..++.+.+|+..- ....+.+.|+|++|+||||+|+.+++.+. |+.+.+ +. ++ ......
T Consensus 10 P~~l~dlvg~~~~~~~l~~~l~~~~~g~~~~~lLL~GppG~GKTtla~ala~el~--~~~iel--na---sd--~r~~~~ 80 (482)
T PRK04195 10 PKTLSDVVGNEKAKEQLREWIESWLKGKPKKALLLYGPPGVGKTSLAHALANDYG--WEVIEL--NA---SD--QRTADV 80 (482)
T ss_pred CCCHHHhcCCHHHHHHHHHHHHHHhcCCCCCeEEEECCCCCCHHHHHHHHHHHcC--CCEEEE--cc---cc--cccHHH
Confidence 344567999999999999998632 22267899999999999999999999763 322211 11 11 111112
Q ss_pred HHHHHHHHhcCccccCCCCChHHHHHHhcCCcEEEEEeCCCChH------HHHHHHhccCCCCCCCEEEEEeCCch-hhh
Q 002220 260 RDRVVSEIFQEDIKIGTPYLPDYIVERLNRMKVLTVLDDVNKVR------QLHYLACVLDQFGPGSRIIITTRDKR-ILD 332 (951)
Q Consensus 260 ~~~il~~l~~~~~~~~~~~~~~~l~~~l~~~~~LlVlDdv~~~~------~~~~l~~~~~~~~~gs~IlvTtR~~~-v~~ 332 (951)
...++....... .....++-+||+|+++... ....+...+. ..+..||+|+.+.. ...
T Consensus 81 i~~~i~~~~~~~-------------sl~~~~~kvIiIDEaD~L~~~~d~~~~~aL~~~l~--~~~~~iIli~n~~~~~~~ 145 (482)
T PRK04195 81 IERVAGEAATSG-------------SLFGARRKLILLDEVDGIHGNEDRGGARAILELIK--KAKQPIILTANDPYDPSL 145 (482)
T ss_pred HHHHHHHhhccC-------------cccCCCCeEEEEecCcccccccchhHHHHHHHHHH--cCCCCEEEeccCccccch
Confidence 222222211110 0011357799999997542 2455544443 23344666664432 111
Q ss_pred -hcCCCccceEEcCCCChhhhHHHHhhhhccCCCCChhHHHHHHHHHHHcCCCchHHH
Q 002220 333 -DFGVCDTDIYEVNKLRFHEALVLFSNFAFKENQCPGDLLALLERVLKYANGNPLALR 389 (951)
Q Consensus 333 -~~~~~~~~~~~l~~L~~~~a~~Lf~~~~~~~~~~~~~~~~~~~~i~~~~~g~PLal~ 389 (951)
... .....+++.+++.++....+.+.+.......+ .++...|++.++|..-.+.
T Consensus 146 k~Lr-sr~~~I~f~~~~~~~i~~~L~~i~~~egi~i~--~eaL~~Ia~~s~GDlR~ai 200 (482)
T PRK04195 146 RELR-NACLMIEFKRLSTRSIVPVLKRICRKEGIECD--DEALKEIAERSGGDLRSAI 200 (482)
T ss_pred hhHh-ccceEEEecCCCHHHHHHHHHHHHHHcCCCCC--HHHHHHHHHHcCCCHHHHH
Confidence 111 11267999999999999988877644332222 2567888999998765543
No 72
>PRK14960 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.41 E-value=6.2e-06 Score=93.62 Aligned_cols=182 Identities=15% Similarity=0.124 Sum_probs=109.6
Q ss_pred CCCCCCcccchhhHHHHHHhhccCCCCcEEEEEEecCCChhHHHHHHHHHHhhccc---------------------cce
Q 002220 182 STYSDGFVGLNSRIQKIKSLLCIGLPDFRTIGIWGMGGIGKTTLAGAVFKLISREF---------------------EGK 240 (951)
Q Consensus 182 ~~~~~~~vGr~~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~~~~~~~~~f---------------------~~~ 240 (951)
|...+++||.+...+.|..++..+. -.+.+.++|+.|+||||+|+.+++.+-... ..+
T Consensus 11 PktFddVIGQe~vv~~L~~aI~~gr-l~HAyLF~GPpGvGKTTlAriLAK~LnC~~~~~~~pCg~C~sC~~I~~g~hpDv 89 (702)
T PRK14960 11 PRNFNELVGQNHVSRALSSALERGR-LHHAYLFTGTRGVGKTTIARILAKCLNCETGVTSTPCEVCATCKAVNEGRFIDL 89 (702)
T ss_pred CCCHHHhcCcHHHHHHHHHHHHcCC-CCeEEEEECCCCCCHHHHHHHHHHHhCCCcCCCCCCCccCHHHHHHhcCCCCce
Confidence 3445689999999999999986432 347889999999999999999998653211 011
Q ss_pred eecccccchhcCCCChHHHHHHHHHHHhcCccccCCCCChHHHHHHhcCCcEEEEEeCCCCh--HHHHHHHhccCCCCCC
Q 002220 241 CFMPNVREESENGGGLVYLRDRVVSEIFQEDIKIGTPYLPDYIVERLNRMKVLTVLDDVNKV--RQLHYLACVLDQFGPG 318 (951)
Q Consensus 241 ~~~~~~~~~~~~~~~~~~l~~~il~~l~~~~~~~~~~~~~~~l~~~l~~~~~LlVlDdv~~~--~~~~~l~~~~~~~~~g 318 (951)
+.+.. +. ..++..+. .++.... ..-..++.-++|+|+|+.. .....++..+.....+
T Consensus 90 iEIDA----As-~~~VddIR-eli~~~~---------------y~P~~gk~KV~IIDEVh~LS~~A~NALLKtLEEPP~~ 148 (702)
T PRK14960 90 IEIDA----AS-RTKVEDTR-ELLDNVP---------------YAPTQGRFKVYLIDEVHMLSTHSFNALLKTLEEPPEH 148 (702)
T ss_pred EEecc----cc-cCCHHHHH-HHHHHHh---------------hhhhcCCcEEEEEechHhcCHHHHHHHHHHHhcCCCC
Confidence 11100 00 01111111 1111100 0001245668999999754 4566666666554566
Q ss_pred CEEEEEeCCch-hhhhcCCCccceEEcCCCChhhhHHHHhhhhccCCCCChhHHHHHHHHHHHcCCCchHH
Q 002220 319 SRIIITTRDKR-ILDDFGVCDTDIYEVNKLRFHEALVLFSNFAFKENQCPGDLLALLERVLKYANGNPLAL 388 (951)
Q Consensus 319 s~IlvTtR~~~-v~~~~~~~~~~~~~l~~L~~~~a~~Lf~~~~~~~~~~~~~~~~~~~~i~~~~~g~PLal 388 (951)
.++|++|.+.. +.... ......+++.+++.++..+.+.+.+-...... ..+....|++.++|.+-.+
T Consensus 149 v~FILaTtd~~kIp~TI-lSRCq~feFkpLs~eEI~k~L~~Il~kEgI~i--d~eAL~~IA~~S~GdLRdA 216 (702)
T PRK14960 149 VKFLFATTDPQKLPITV-ISRCLQFTLRPLAVDEITKHLGAILEKEQIAA--DQDAIWQIAESAQGSLRDA 216 (702)
T ss_pred cEEEEEECChHhhhHHH-HHhhheeeccCCCHHHHHHHHHHHHHHcCCCC--CHHHHHHHHHHcCCCHHHH
Confidence 77887776542 21111 01127899999999999999887764332211 2245678888999876433
No 73
>TIGR01242 26Sp45 26S proteasome subunit P45 family. Many proteins may score above the trusted cutoff because an internal
Probab=98.38 E-value=2.6e-06 Score=94.17 Aligned_cols=173 Identities=23% Similarity=0.254 Sum_probs=99.5
Q ss_pred CCCCcccchhhHHHHHHhhccC-----------CCCcEEEEEEecCCChhHHHHHHHHHHhhccccceeecccccchhcC
Q 002220 184 YSDGFVGLNSRIQKIKSLLCIG-----------LPDFRTIGIWGMGGIGKTTLAGAVFKLISREFEGKCFMPNVREESEN 252 (951)
Q Consensus 184 ~~~~~vGr~~~~~~l~~~L~~~-----------~~~~~vv~I~G~gGiGKTtLA~~~~~~~~~~f~~~~~~~~~~~~~~~ 252 (951)
..+++.|++..+++|.+.+... -...+-+.|+|++|+|||++|+++++.....|-....
T Consensus 120 ~~~di~Gl~~~~~~l~~~i~~~~~~~~~~~~~g~~~p~gvLL~GppGtGKT~lakaia~~l~~~~~~v~~---------- 189 (364)
T TIGR01242 120 SYEDIGGLEEQIREIREAVELPLKHPELFEEVGIEPPKGVLLYGPPGTGKTLLAKAVAHETNATFIRVVG---------- 189 (364)
T ss_pred CHHHhCChHHHHHHHHHHHHHHhcCHHHHHhcCCCCCceEEEECCCCCCHHHHHHHHHHhCCCCEEecch----------
Confidence 3457899999999998876421 1234568999999999999999999977655422110
Q ss_pred CCChHHHHHHHHHHHhcCccccCCCCCh-HHHHHHhcCCcEEEEEeCCCChH----------------HHHHHHhccCCC
Q 002220 253 GGGLVYLRDRVVSEIFQEDIKIGTPYLP-DYIVERLNRMKVLTVLDDVNKVR----------------QLHYLACVLDQF 315 (951)
Q Consensus 253 ~~~~~~l~~~il~~l~~~~~~~~~~~~~-~~l~~~l~~~~~LlVlDdv~~~~----------------~~~~l~~~~~~~ 315 (951)
..+........ .... ..+...-...+.+|++|+++... .+..+...+...
T Consensus 190 ----~~l~~~~~g~~---------~~~i~~~f~~a~~~~p~il~iDEiD~l~~~~~~~~~~~~~~~~~~l~~ll~~ld~~ 256 (364)
T TIGR01242 190 ----SELVRKYIGEG---------ARLVREIFELAKEKAPSIIFIDEIDAIAAKRTDSGTSGDREVQRTLMQLLAELDGF 256 (364)
T ss_pred ----HHHHHHhhhHH---------HHHHHHHHHHHHhcCCcEEEhhhhhhhccccccCCCCccHHHHHHHHHHHHHhhCC
Confidence 00111000000 0000 11111113456799999986431 122233222211
Q ss_pred --CCCCEEEEEeCCchhhh-----hcCCCccceEEcCCCChhhhHHHHhhhhccCCCCC-hhHHHHHHHHHHHcCCCc
Q 002220 316 --GPGSRIIITTRDKRILD-----DFGVCDTDIYEVNKLRFHEALVLFSNFAFKENQCP-GDLLALLERVLKYANGNP 385 (951)
Q Consensus 316 --~~gs~IlvTtR~~~v~~-----~~~~~~~~~~~l~~L~~~~a~~Lf~~~~~~~~~~~-~~~~~~~~~i~~~~~g~P 385 (951)
..+.+||.||....... ....+ ..+.++..+.++..++|..++.+..... .+ ...+++.+.|..
T Consensus 257 ~~~~~v~vI~ttn~~~~ld~al~r~grfd--~~i~v~~P~~~~r~~Il~~~~~~~~l~~~~~----~~~la~~t~g~s 328 (364)
T TIGR01242 257 DPRGNVKVIAATNRPDILDPALLRPGRFD--RIIEVPLPDFEGRLEILKIHTRKMKLAEDVD----LEAIAKMTEGAS 328 (364)
T ss_pred CCCCCEEEEEecCChhhCChhhcCcccCc--eEEEeCCcCHHHHHHHHHHHHhcCCCCccCC----HHHHHHHcCCCC
Confidence 24677888887543221 11233 6799999999999999998875433222 12 345666776653
No 74
>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]
Probab=98.37 E-value=1e-08 Score=101.58 Aligned_cols=106 Identities=21% Similarity=0.223 Sum_probs=71.2
Q ss_pred cceeeccccCCCCC--ccCcccccCCCCcEEecccccccccccccccCCCCCCEEeccCCCCCCccc--hhcccCCCCcE
Q 002220 722 GKVVKLRLWYTPIE--EVPSSIECLTNLETLDLRLCERLKRVSTSICKLKSLGSLLLAFCSNLEGFP--EILEKMELLET 797 (951)
Q Consensus 722 ~~L~~L~l~~~~l~--~lp~~l~~l~~L~~L~Ls~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~--~~l~~l~~L~~ 797 (951)
..++.|+|+...|+ .+-.-+..|.+|+.|.|.++.+.+.+...+.+-.+|+.|+++.|+..+... -.+.+++.|..
T Consensus 185 sRlq~lDLS~s~it~stl~~iLs~C~kLk~lSlEg~~LdD~I~~~iAkN~~L~~lnlsm~sG~t~n~~~ll~~scs~L~~ 264 (419)
T KOG2120|consen 185 SRLQHLDLSNSVITVSTLHGILSQCSKLKNLSLEGLRLDDPIVNTIAKNSNLVRLNLSMCSGFTENALQLLLSSCSRLDE 264 (419)
T ss_pred hhhHHhhcchhheeHHHHHHHHHHHHhhhhccccccccCcHHHHHHhccccceeeccccccccchhHHHHHHHhhhhHhh
Confidence 35777888877776 344446788888888888888887777788888888888888887666532 34567777777
Q ss_pred EEcccCCCcc-c-CccccC-CCCCcEEeeccCC
Q 002220 798 LDLERTGVKE-L-PPSFEN-LQGLRQLSLIGCS 827 (951)
Q Consensus 798 L~l~~n~i~~-l-~~~~~~-l~~L~~L~l~~~~ 827 (951)
|+++.|.+.. . .-.+.+ -++|+.|+|+||.
T Consensus 265 LNlsWc~l~~~~Vtv~V~hise~l~~LNlsG~r 297 (419)
T KOG2120|consen 265 LNLSWCFLFTEKVTVAVAHISETLTQLNLSGYR 297 (419)
T ss_pred cCchHhhccchhhhHHHhhhchhhhhhhhhhhH
Confidence 7777776542 1 111111 1356666666654
No 75
>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A ....
Probab=98.37 E-value=3.2e-07 Score=71.96 Aligned_cols=58 Identities=38% Similarity=0.609 Sum_probs=43.0
Q ss_pred CCCCEEeccCCCCCCcCc-cCCCCCCCCEEEccCCCCcccc-hhhcCCCCCCEEeeCCCC
Q 002220 844 SSLERLQLSGCEIKEIPE-DIDCLSSLEVLDLSGSKIEILP-TSIGQLSRLRQLNLLDCN 901 (951)
Q Consensus 844 ~~L~~L~L~~~~l~~l~~-~l~~l~~L~~L~L~~n~l~~l~-~~l~~l~~L~~L~L~~~~ 901 (951)
|+|+.|++++|++..+|. .+..+++|++|++++|.++.++ ..+..+++|+.|++++|+
T Consensus 1 p~L~~L~l~~n~l~~i~~~~f~~l~~L~~L~l~~N~l~~i~~~~f~~l~~L~~L~l~~N~ 60 (61)
T PF13855_consen 1 PNLESLDLSNNKLTEIPPDSFSNLPNLETLDLSNNNLTSIPPDAFSNLPNLRYLDLSNNN 60 (61)
T ss_dssp TTESEEEETSSTESEECTTTTTTGTTESEEEETSSSESEEETTTTTTSTTESEEEETSSS
T ss_pred CcCcEEECCCCCCCccCHHHHcCCCCCCEeEccCCccCccCHHHHcCCCCCCEEeCcCCc
Confidence 467777777777777663 5677778888888887777776 466778888888887765
No 76
>PRK12323 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.37 E-value=9.5e-06 Score=91.90 Aligned_cols=198 Identities=13% Similarity=0.095 Sum_probs=109.1
Q ss_pred CCCCCCcccchhhHHHHHHhhccCCCCcEEEEEEecCCChhHHHHHHHHHHhhccccc-eeecccccchhcCCCChHHHH
Q 002220 182 STYSDGFVGLNSRIQKIKSLLCIGLPDFRTIGIWGMGGIGKTTLAGAVFKLISREFEG-KCFMPNVREESENGGGLVYLR 260 (951)
Q Consensus 182 ~~~~~~~vGr~~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~~~~~~~~~f~~-~~~~~~~~~~~~~~~~~~~l~ 260 (951)
|...+++||-+.-++.|.+.+..+. -.+.+.++|..|+||||+|+.+++.+-..-.. .--+. .. ..+.-...
T Consensus 12 PqtFddVIGQe~vv~~L~~al~~gR-LpHA~LFtGP~GvGKTTLAriLAkaLnC~~p~~~~g~~-----~~-PCG~C~sC 84 (700)
T PRK12323 12 PRDFTTLVGQEHVVRALTHALEQQR-LHHAYLFTGTRGVGKTTLSRILAKSLNCTGADGEGGIT-----AQ-PCGQCRAC 84 (700)
T ss_pred CCcHHHHcCcHHHHHHHHHHHHhCC-CceEEEEECCCCCCHHHHHHHHHHHhcCCCccccccCC-----CC-CCcccHHH
Confidence 4445689999999999999986432 34677899999999999999999865321000 00000 00 00000000
Q ss_pred HHHHHHHhcCccccCC-CCCh-HHHHHH--------hcCCcEEEEEeCCCCh--HHHHHHHhccCCCCCCCEEEEEeCC-
Q 002220 261 DRVVSEIFQEDIKIGT-PYLP-DYIVER--------LNRMKVLTVLDDVNKV--RQLHYLACVLDQFGPGSRIIITTRD- 327 (951)
Q Consensus 261 ~~il~~l~~~~~~~~~-~~~~-~~l~~~--------l~~~~~LlVlDdv~~~--~~~~~l~~~~~~~~~gs~IlvTtR~- 327 (951)
..+...-...-..... .... +.+++. ..++.-++|+|+++.. ...+.++..+.....++++|++|.+
T Consensus 85 ~~I~aG~hpDviEIdAas~~gVDdIReLie~~~~~P~~gr~KViIIDEah~Ls~~AaNALLKTLEEPP~~v~FILaTtep 164 (700)
T PRK12323 85 TEIDAGRFVDYIEMDAASNRGVDEMAQLLDKAVYAPTAGRFKVYMIDEVHMLTNHAFNAMLKTLEEPPEHVKFILATTDP 164 (700)
T ss_pred HHHHcCCCCcceEecccccCCHHHHHHHHHHHHhchhcCCceEEEEEChHhcCHHHHHHHHHhhccCCCCceEEEEeCCh
Confidence 0000000000000000 0000 222221 1345668999999754 4577777776655556665555544
Q ss_pred chhhhhcCCCccceEEcCCCChhhhHHHHhhhhccCCCCChhHHHHHHHHHHHcCCCchHHH
Q 002220 328 KRILDDFGVCDTDIYEVNKLRFHEALVLFSNFAFKENQCPGDLLALLERVLKYANGNPLALR 389 (951)
Q Consensus 328 ~~v~~~~~~~~~~~~~l~~L~~~~a~~Lf~~~~~~~~~~~~~~~~~~~~i~~~~~g~PLal~ 389 (951)
..+..... ..+..+.++.++.++..+.+.+.+....... ..+..+.|++.++|.|.-..
T Consensus 165 ~kLlpTIr-SRCq~f~f~~ls~eei~~~L~~Il~~Egi~~--d~eAL~~IA~~A~Gs~RdAL 223 (700)
T PRK12323 165 QKIPVTVL-SRCLQFNLKQMPPGHIVSHLDAILGEEGIAH--EVNALRLLAQAAQGSMRDAL 223 (700)
T ss_pred HhhhhHHH-HHHHhcccCCCChHHHHHHHHHHHHHcCCCC--CHHHHHHHHHHcCCCHHHHH
Confidence 44432211 0117899999999999999887664322211 12456788999999986433
No 77
>PRK00440 rfc replication factor C small subunit; Reviewed
Probab=98.37 E-value=8.7e-06 Score=88.92 Aligned_cols=183 Identities=17% Similarity=0.227 Sum_probs=105.4
Q ss_pred CCCCCcccchhhHHHHHHhhccCCCCcEEEEEEecCCChhHHHHHHHHHHhhcc-ccceeecccccchhcCCCChHHHHH
Q 002220 183 TYSDGFVGLNSRIQKIKSLLCIGLPDFRTIGIWGMGGIGKTTLAGAVFKLISRE-FEGKCFMPNVREESENGGGLVYLRD 261 (951)
Q Consensus 183 ~~~~~~vGr~~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~~~~~~~~~-f~~~~~~~~~~~~~~~~~~~~~l~~ 261 (951)
..-.+++|++..++.+..++..+ ..+.+.++|.+|+||||+|+.+++..... +.. .++. ... +. ..+...+..
T Consensus 14 ~~~~~~~g~~~~~~~l~~~i~~~--~~~~~ll~G~~G~GKt~~~~~l~~~l~~~~~~~-~~i~-~~~-~~-~~~~~~~~~ 87 (319)
T PRK00440 14 RTLDEIVGQEEIVERLKSYVKEK--NMPHLLFAGPPGTGKTTAALALARELYGEDWRE-NFLE-LNA-SD-ERGIDVIRN 87 (319)
T ss_pred CcHHHhcCcHHHHHHHHHHHhCC--CCCeEEEECCCCCCHHHHHHHHHHHHcCCcccc-ceEE-ecc-cc-ccchHHHHH
Confidence 34467999999999999998543 33457999999999999999999875332 221 1111 000 01 111111111
Q ss_pred HHHHHHhcCccccCCCCChHHHHHHhcCCcEEEEEeCCCCh--HHHHHHHhccCCCCCCCEEEEEeCCc-hhhhhcCCCc
Q 002220 262 RVVSEIFQEDIKIGTPYLPDYIVERLNRMKVLTVLDDVNKV--RQLHYLACVLDQFGPGSRIIITTRDK-RILDDFGVCD 338 (951)
Q Consensus 262 ~il~~l~~~~~~~~~~~~~~~l~~~l~~~~~LlVlDdv~~~--~~~~~l~~~~~~~~~gs~IlvTtR~~-~v~~~~~~~~ 338 (951)
.+.+....... ....+-++++|+++.. .....+...+....+.+++|+++... .+..... ..
T Consensus 88 -~i~~~~~~~~~-------------~~~~~~vviiDe~~~l~~~~~~~L~~~le~~~~~~~lIl~~~~~~~l~~~l~-sr 152 (319)
T PRK00440 88 -KIKEFARTAPV-------------GGAPFKIIFLDEADNLTSDAQQALRRTMEMYSQNTRFILSCNYSSKIIDPIQ-SR 152 (319)
T ss_pred -HHHHHHhcCCC-------------CCCCceEEEEeCcccCCHHHHHHHHHHHhcCCCCCeEEEEeCCccccchhHH-HH
Confidence 11111110000 0123568999998644 23445555544445567777776433 2211110 01
Q ss_pred cceEEcCCCChhhhHHHHhhhhccCCCCChhHHHHHHHHHHHcCCCchHH
Q 002220 339 TDIYEVNKLRFHEALVLFSNFAFKENQCPGDLLALLERVLKYANGNPLAL 388 (951)
Q Consensus 339 ~~~~~l~~L~~~~a~~Lf~~~~~~~~~~~~~~~~~~~~i~~~~~g~PLal 388 (951)
...+++.+++.++....+...+-.....- ..+.+..+++.++|.+--+
T Consensus 153 ~~~~~~~~l~~~ei~~~l~~~~~~~~~~i--~~~al~~l~~~~~gd~r~~ 200 (319)
T PRK00440 153 CAVFRFSPLKKEAVAERLRYIAENEGIEI--TDDALEAIYYVSEGDMRKA 200 (319)
T ss_pred hheeeeCCCCHHHHHHHHHHHHHHcCCCC--CHHHHHHHHHHcCCCHHHH
Confidence 15789999999999999888774332211 1346778888999987553
No 78
>PRK14949 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.37 E-value=1.1e-05 Score=94.49 Aligned_cols=187 Identities=15% Similarity=0.103 Sum_probs=111.0
Q ss_pred CCCCCCcccchhhHHHHHHhhccCCCCcEEEEEEecCCChhHHHHHHHHHHhhcc-c-cc-eeeccc------------c
Q 002220 182 STYSDGFVGLNSRIQKIKSLLCIGLPDFRTIGIWGMGGIGKTTLAGAVFKLISRE-F-EG-KCFMPN------------V 246 (951)
Q Consensus 182 ~~~~~~~vGr~~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~~~~~~~~~-f-~~-~~~~~~------------~ 246 (951)
|....++||.+..++.|.+++..+ .-...+.++|+.|+||||+|+.+++.+-.. . .. -|..+. +
T Consensus 12 P~tFddIIGQe~Iv~~LknaI~~~-rl~HAyLFtGPpGtGKTTLARiLAk~Lnce~~~~~~pCg~C~sC~~i~~g~~~Dv 90 (944)
T PRK14949 12 PATFEQMVGQSHVLHALTNALTQQ-RLHHAYLFTGTRGVGKTSLARLFAKGLNCEQGVTATPCGVCSSCVEIAQGRFVDL 90 (944)
T ss_pred CCCHHHhcCcHHHHHHHHHHHHhC-CCCeEEEEECCCCCCHHHHHHHHHHhccCccCCCCCCCCCchHHHHHhcCCCceE
Confidence 344568999999999999988543 224566899999999999999999865432 1 00 011100 0
Q ss_pred cchhcC-CCChHHHHHHHHHHHhcCccccCCCCChHHHHHHhcCCcEEEEEeCCCC--hHHHHHHHhccCCCCCCCEEEE
Q 002220 247 REESEN-GGGLVYLRDRVVSEIFQEDIKIGTPYLPDYIVERLNRMKVLTVLDDVNK--VRQLHYLACVLDQFGPGSRIII 323 (951)
Q Consensus 247 ~~~~~~-~~~~~~l~~~il~~l~~~~~~~~~~~~~~~l~~~l~~~~~LlVlDdv~~--~~~~~~l~~~~~~~~~gs~Ilv 323 (951)
.+.... ..++..+ +.+...+. ..-..+++-++|||+++. ....+.|+..+.......++|+
T Consensus 91 iEidAas~~kVDdI-ReLie~v~---------------~~P~~gk~KViIIDEAh~LT~eAqNALLKtLEEPP~~vrFIL 154 (944)
T PRK14949 91 IEVDAASRTKVDDT-RELLDNVQ---------------YRPSRGRFKVYLIDEVHMLSRSSFNALLKTLEEPPEHVKFLL 154 (944)
T ss_pred EEeccccccCHHHH-HHHHHHHH---------------hhhhcCCcEEEEEechHhcCHHHHHHHHHHHhccCCCeEEEE
Confidence 000000 0111111 12222110 011235677999999964 4557777776665556666666
Q ss_pred EeCCc-hhhhhcCCCccceEEcCCCChhhhHHHHhhhhccCCCCChhHHHHHHHHHHHcCCCchHH
Q 002220 324 TTRDK-RILDDFGVCDTDIYEVNKLRFHEALVLFSNFAFKENQCPGDLLALLERVLKYANGNPLAL 388 (951)
Q Consensus 324 TtR~~-~v~~~~~~~~~~~~~l~~L~~~~a~~Lf~~~~~~~~~~~~~~~~~~~~i~~~~~g~PLal 388 (951)
+|.+. .+..... .+...|++.+|+.++..+.+.+.+-.... .-..+.++.|++.++|.|--+
T Consensus 155 aTTe~~kLl~TIl-SRCq~f~fkpLs~eEI~~~L~~il~~EgI--~~edeAL~lIA~~S~Gd~R~A 217 (944)
T PRK14949 155 ATTDPQKLPVTVL-SRCLQFNLKSLTQDEIGTQLNHILTQEQL--PFEAEALTLLAKAANGSMRDA 217 (944)
T ss_pred ECCCchhchHHHH-HhheEEeCCCCCHHHHHHHHHHHHHHcCC--CCCHHHHHHHHHHcCCCHHHH
Confidence 65544 3332211 01278999999999999999876633221 112356788999999988533
No 79
>PRK08727 hypothetical protein; Validated
Probab=98.36 E-value=7.4e-06 Score=84.08 Aligned_cols=169 Identities=17% Similarity=0.196 Sum_probs=95.4
Q ss_pred CCCcccchh-hHHHHHHhhccCCCCcEEEEEEecCCChhHHHHHHHHHHhhccccceeecccccchhcCCCChHHHHHHH
Q 002220 185 SDGFVGLNS-RIQKIKSLLCIGLPDFRTIGIWGMGGIGKTTLAGAVFKLISREFEGKCFMPNVREESENGGGLVYLRDRV 263 (951)
Q Consensus 185 ~~~~vGr~~-~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~l~~~i 263 (951)
.++|++... .+..+..+.. + .....+.|+|.+|+|||+||+++++....+...+.|+.. . .....+
T Consensus 18 f~~f~~~~~n~~~~~~~~~~-~-~~~~~l~l~G~~G~GKThL~~a~~~~~~~~~~~~~y~~~-~----------~~~~~~ 84 (233)
T PRK08727 18 FDSYIAAPDGLLAQLQALAA-G-QSSDWLYLSGPAGTGKTHLALALCAAAEQAGRSSAYLPL-Q----------AAAGRL 84 (233)
T ss_pred hhhccCCcHHHHHHHHHHHh-c-cCCCeEEEECCCCCCHHHHHHHHHHHHHHcCCcEEEEeH-H----------HhhhhH
Confidence 345665443 3444444332 1 223569999999999999999999876655445556531 1 111111
Q ss_pred HHHHhcCccccCCCCChHHHHHHhcCCcEEEEEeCCCChH---HHH-HHHhccCC-CCCCCEEEEEeCCc---------h
Q 002220 264 VSEIFQEDIKIGTPYLPDYIVERLNRMKVLTVLDDVNKVR---QLH-YLACVLDQ-FGPGSRIIITTRDK---------R 329 (951)
Q Consensus 264 l~~l~~~~~~~~~~~~~~~l~~~l~~~~~LlVlDdv~~~~---~~~-~l~~~~~~-~~~gs~IlvTtR~~---------~ 329 (951)
.. ..+.+ .+.-+||+||+.... .++ .+...+.. ...|..||+|++.. +
T Consensus 85 ~~-----------------~~~~l-~~~dlLiIDDi~~l~~~~~~~~~lf~l~n~~~~~~~~vI~ts~~~p~~l~~~~~d 146 (233)
T PRK08727 85 RD-----------------ALEAL-EGRSLVALDGLESIAGQREDEVALFDFHNRARAAGITLLYTARQMPDGLALVLPD 146 (233)
T ss_pred HH-----------------HHHHH-hcCCEEEEeCcccccCChHHHHHHHHHHHHHHHcCCeEEEECCCChhhhhhhhHH
Confidence 10 11111 123489999996331 222 22222111 13466799999854 2
Q ss_pred hhhhcCCCccceEEcCCCChhhhHHHHhhhhccCCCCChhHHHHHHHHHHHcCCCchHH
Q 002220 330 ILDDFGVCDTDIYEVNKLRFHEALVLFSNFAFKENQCPGDLLALLERVLKYANGNPLAL 388 (951)
Q Consensus 330 v~~~~~~~~~~~~~l~~L~~~~a~~Lf~~~~~~~~~~~~~~~~~~~~i~~~~~g~PLal 388 (951)
+.+.+... ..+++++++.++-.+++.+++....... -++...-|++.++|..-++
T Consensus 147 L~SRl~~~--~~~~l~~~~~e~~~~iL~~~a~~~~l~l--~~e~~~~La~~~~rd~r~~ 201 (233)
T PRK08727 147 LRSRLAQC--IRIGLPVLDDVARAAVLRERAQRRGLAL--DEAAIDWLLTHGERELAGL 201 (233)
T ss_pred HHHHHhcC--ceEEecCCCHHHHHHHHHHHHHHcCCCC--CHHHHHHHHHhCCCCHHHH
Confidence 22332222 6899999999999999998774322211 1245667777777654443
No 80
>PLN03150 hypothetical protein; Provisional
Probab=98.35 E-value=9.5e-07 Score=104.26 Aligned_cols=109 Identities=29% Similarity=0.507 Sum_probs=60.4
Q ss_pred CcEEEcccCCCc-ccCccccCCCCCcEEeeccCCCCccCCcccCCcCCCCCCCCEEeccCCCCC-CcCccCCCCCCCCEE
Q 002220 795 LETLDLERTGVK-ELPPSFENLQGLRQLSLIGCSELKCSGWVLPTRISKLSSLERLQLSGCEIK-EIPEDIDCLSSLEVL 872 (951)
Q Consensus 795 L~~L~l~~n~i~-~l~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~l~-~l~~~l~~l~~L~~L 872 (951)
++.|+|++|.+. .+|..+..+++|+.|+|++|.... .+|..+..+++|+.|+|++|++. .+|..+..+++|+.|
T Consensus 420 v~~L~L~~n~L~g~ip~~i~~L~~L~~L~Ls~N~l~g----~iP~~~~~l~~L~~LdLs~N~lsg~iP~~l~~L~~L~~L 495 (623)
T PLN03150 420 IDGLGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRG----NIPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTSLRIL 495 (623)
T ss_pred EEEEECCCCCccccCCHHHhCCCCCCEEECCCCcccC----cCChHHhCCCCCCEEECCCCCCCCCCchHHhcCCCCCEE
Confidence 344455555544 344455555555555555555443 24555556666666666666665 356666666666666
Q ss_pred EccCCCCc-ccchhhcCC-CCCCEEeeCCCCCCCcCC
Q 002220 873 DLSGSKIE-ILPTSIGQL-SRLRQLNLLDCNMLQSIP 907 (951)
Q Consensus 873 ~L~~n~l~-~l~~~l~~l-~~L~~L~L~~~~~l~~lp 907 (951)
+|++|+++ .+|..+..+ .++..+++.+|+.+...|
T Consensus 496 ~Ls~N~l~g~iP~~l~~~~~~~~~l~~~~N~~lc~~p 532 (623)
T PLN03150 496 NLNGNSLSGRVPAALGGRLLHRASFNFTDNAGLCGIP 532 (623)
T ss_pred ECcCCcccccCChHHhhccccCceEEecCCccccCCC
Confidence 66666655 555555432 345566666666555444
No 81
>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]
Probab=98.35 E-value=8.4e-08 Score=108.18 Aligned_cols=241 Identities=22% Similarity=0.158 Sum_probs=119.4
Q ss_pred ccccceecccCCccccccccccccccccceeccCCCCCCCcCCCCCCCCCCcEEecCCCCCCCccCcccccCCcccEEec
Q 002220 606 DLENLIALHLPYSEVEQIWKGQKEAFKLKFIDLHDSHNLTSIPEPLEAPNLERINLCNCTNLSYIPLYVQNFHNLGSLSL 685 (951)
Q Consensus 606 ~l~~L~~L~L~~~~i~~l~~~~~~l~~L~~L~L~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~L 685 (951)
.+..+..+.+..|.|..+-..+..+.+|..|++.+|.+......+..+++|++|+|++|.+...-+ +..++.|+.|++
T Consensus 70 ~l~~l~~l~l~~n~i~~~~~~l~~~~~l~~l~l~~n~i~~i~~~l~~~~~L~~L~ls~N~I~~i~~--l~~l~~L~~L~l 147 (414)
T KOG0531|consen 70 SLTSLKELNLRQNLIAKILNHLSKLKSLEALDLYDNKIEKIENLLSSLVNLQVLDLSFNKITKLEG--LSTLTLLKELNL 147 (414)
T ss_pred HhHhHHhhccchhhhhhhhcccccccceeeeeccccchhhcccchhhhhcchheeccccccccccc--hhhccchhhhee
Confidence 344455555555555554344555556666666655433222224455556666665544332222 344444555555
Q ss_pred cCCCCCcccCCCCCCCCCceeeCcCCCCCCCCCccccceeeccccCCCCCccCcc-cccCCCCcEEeccccccccccccc
Q 002220 686 KGCKSLRCFPRNIHFRSPIEIDCAWCVNLTEFPQISGKVVKLRLWYTPIEEVPSS-IECLTNLETLDLRLCERLKRVSTS 764 (951)
Q Consensus 686 ~~~~~l~~l~~~~~l~~L~~L~l~~~~~l~~l~~~~~~L~~L~l~~~~l~~lp~~-l~~l~~L~~L~Ls~~~~~~~~~~~ 764 (951)
++|. +..+...-. ..+|+.+++++|.+..+... +..+.+|+.+.+.+|.+...- .
T Consensus 148 ~~N~-i~~~~~~~~---------------------l~~L~~l~l~~n~i~~ie~~~~~~~~~l~~l~l~~n~i~~i~--~ 203 (414)
T KOG0531|consen 148 SGNL-ISDISGLES---------------------LKSLKLLDLSYNRIVDIENDELSELISLEELDLGGNSIREIE--G 203 (414)
T ss_pred ccCc-chhccCCcc---------------------chhhhcccCCcchhhhhhhhhhhhccchHHHhccCCchhccc--c
Confidence 5532 222222111 23444555555555555443 355566666666665443321 1
Q ss_pred ccCCCCCCEEeccCCCCCCccchhcccCC--CCcEEEcccCCCcccCccccCCCCCcEEeeccCCCCccCCcccCCcCCC
Q 002220 765 ICKLKSLGSLLLAFCSNLEGFPEILEKME--LLETLDLERTGVKELPPSFENLQGLRQLSLIGCSELKCSGWVLPTRISK 842 (951)
Q Consensus 765 ~~~l~~L~~L~l~~~~~~~~~~~~l~~l~--~L~~L~l~~n~i~~l~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~ 842 (951)
+..+..+..+.+..|.....- .+..+. .|+.+++.+|.+..++..+..+..+..|++.++......+ +..
T Consensus 204 ~~~~~~l~~~~l~~n~i~~~~--~l~~~~~~~L~~l~l~~n~i~~~~~~~~~~~~l~~l~~~~n~~~~~~~------~~~ 275 (414)
T KOG0531|consen 204 LDLLKKLVLLSLLDNKISKLE--GLNELVMLHLRELYLSGNRISRSPEGLENLKNLPVLDLSSNRISNLEG------LER 275 (414)
T ss_pred hHHHHHHHHhhcccccceecc--CcccchhHHHHHHhcccCccccccccccccccccccchhhcccccccc------ccc
Confidence 222233333344444332211 112222 2677777777777666666677777777777766554321 333
Q ss_pred CCCCCEEeccCCCCCC----cCcc-CCCCCCCCEEEccCCCCc
Q 002220 843 LSSLERLQLSGCEIKE----IPED-IDCLSSLEVLDLSGSKIE 880 (951)
Q Consensus 843 l~~L~~L~L~~~~l~~----l~~~-l~~l~~L~~L~L~~n~l~ 880 (951)
.+.+..+....+.+.. .... ....++++.+.+.+|.+.
T Consensus 276 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 318 (414)
T KOG0531|consen 276 LPKLSELWLNDNKLALSEAISQEYITSAAPTLVTLTLELNPIR 318 (414)
T ss_pred cchHHHhccCcchhcchhhhhccccccccccccccccccCccc
Confidence 4455555555555442 1111 345667777777777544
No 82
>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]
Probab=98.33 E-value=7e-08 Score=108.82 Aligned_cols=268 Identities=22% Similarity=0.210 Sum_probs=173.0
Q ss_pred ccccccceeccCCCCCCCcCCCCCCCCCCcEEecCCCCCCCccCcccccCCcccEEeccCCCCCcccCCCCCCCCCceee
Q 002220 628 KEAFKLKFIDLHDSHNLTSIPEPLEAPNLERINLCNCTNLSYIPLYVQNFHNLGSLSLKGCKSLRCFPRNIHFRSPIEID 707 (951)
Q Consensus 628 ~~l~~L~~L~L~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~L~~~~~l~~l~~~~~l~~L~~L~ 707 (951)
..+..++.+++..|.+......+..+.+|+.|++.+|.+ ..+...+..+++|++|++++| .+..+...-.++
T Consensus 69 ~~l~~l~~l~l~~n~i~~~~~~l~~~~~l~~l~l~~n~i-~~i~~~l~~~~~L~~L~ls~N-~I~~i~~l~~l~------ 140 (414)
T KOG0531|consen 69 ESLTSLKELNLRQNLIAKILNHLSKLKSLEALDLYDNKI-EKIENLLSSLVNLQVLDLSFN-KITKLEGLSTLT------ 140 (414)
T ss_pred HHhHhHHhhccchhhhhhhhcccccccceeeeeccccch-hhcccchhhhhcchheecccc-ccccccchhhcc------
Confidence 456677777788887666555677889999999998654 444444778899999999984 333333222222
Q ss_pred CcCCCCCCCCCccccceeeccccCCCCCccCcccccCCCCcEEeccccccccccc-ccccCCCCCCEEeccCCCCCCccc
Q 002220 708 CAWCVNLTEFPQISGKVVKLRLWYTPIEEVPSSIECLTNLETLDLRLCERLKRVS-TSICKLKSLGSLLLAFCSNLEGFP 786 (951)
Q Consensus 708 l~~~~~l~~l~~~~~~L~~L~l~~~~l~~lp~~l~~l~~L~~L~Ls~~~~~~~~~-~~~~~l~~L~~L~l~~~~~~~~~~ 786 (951)
.|+.|++.+|.+..+.. +..+++|+.+++++|.+...-+ . ...+.+|+.+.+.+|.....
T Consensus 141 ---------------~L~~L~l~~N~i~~~~~-~~~l~~L~~l~l~~n~i~~ie~~~-~~~~~~l~~l~l~~n~i~~i-- 201 (414)
T KOG0531|consen 141 ---------------LLKELNLSGNLISDISG-LESLKSLKLLDLSYNRIVDIENDE-LSELISLEELDLGGNSIREI-- 201 (414)
T ss_pred ---------------chhhheeccCcchhccC-CccchhhhcccCCcchhhhhhhhh-hhhccchHHHhccCCchhcc--
Confidence 26667777788887764 5558889999999887766544 2 46778888888888875432
Q ss_pred hhcccCCCCcEEEcccCCCcccCccccCCCC--CcEEeeccCCCCccCCcccCCcCCCCCCCCEEeccCCCCCCcCccCC
Q 002220 787 EILEKMELLETLDLERTGVKELPPSFENLQG--LRQLSLIGCSELKCSGWVLPTRISKLSSLERLQLSGCEIKEIPEDID 864 (951)
Q Consensus 787 ~~l~~l~~L~~L~l~~n~i~~l~~~~~~l~~--L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~l~~l~~~l~ 864 (951)
+.+..+..+..+++..|.+..+-. +..+.. |+.+++.+|..... +..+..+..+..|++.+|.+..+. .+.
T Consensus 202 ~~~~~~~~l~~~~l~~n~i~~~~~-l~~~~~~~L~~l~l~~n~i~~~-----~~~~~~~~~l~~l~~~~n~~~~~~-~~~ 274 (414)
T KOG0531|consen 202 EGLDLLKKLVLLSLLDNKISKLEG-LNELVMLHLRELYLSGNRISRS-----PEGLENLKNLPVLDLSSNRISNLE-GLE 274 (414)
T ss_pred cchHHHHHHHHhhcccccceeccC-cccchhHHHHHHhcccCccccc-----cccccccccccccchhhccccccc-ccc
Confidence 223444555555777777775532 233333 78888888887762 244667778888888888777643 244
Q ss_pred CCCCCCEEEccCCCCc---cc-ch-hhcCCCCCCEEeeCCCCCCCcCCC---------ccccccEeeeccCcccccCCC
Q 002220 865 CLSSLEVLDLSGSKIE---IL-PT-SIGQLSRLRQLNLLDCNMLQSIPE---------LPRGLLRLNAQNCRRLRSLPE 929 (951)
Q Consensus 865 ~l~~L~~L~L~~n~l~---~l-~~-~l~~l~~L~~L~L~~~~~l~~lp~---------~~~~L~~L~i~~C~~L~~lp~ 929 (951)
..+.+..+....+.+. .. .. .....+++..+.+..++.-...+. .+.++...+...|+.....+.
T Consensus 275 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 353 (414)
T KOG0531|consen 275 RLPKLSELWLNDNKLALSEAISQEYITSAAPTLVTLTLELNPIRKISSLDLRTKVRLTLLTSLVQIDPKLIKAAAELKE 353 (414)
T ss_pred ccchHHHhccCcchhcchhhhhccccccccccccccccccCcccccccccHHHHHHHhccchhhhhhhhhcchHHhhhc
Confidence 4556666677777554 11 11 145677888888888776654442 223555555556665444444
No 83
>PRK14956 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.33 E-value=3.9e-06 Score=92.65 Aligned_cols=192 Identities=15% Similarity=0.102 Sum_probs=106.8
Q ss_pred CCCCCCcccchhhHHHHHHhhccCCCCcEEEEEEecCCChhHHHHHHHHHHhhcccc---ceeecccccchhcCCCChHH
Q 002220 182 STYSDGFVGLNSRIQKIKSLLCIGLPDFRTIGIWGMGGIGKTTLAGAVFKLISREFE---GKCFMPNVREESENGGGLVY 258 (951)
Q Consensus 182 ~~~~~~~vGr~~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~~~~~~~~~f~---~~~~~~~~~~~~~~~~~~~~ 258 (951)
|...+++||-+..+..|..++..+. -.+.+.++|+.|+||||+|+.+++.+-..-. ..|..+ .....
T Consensus 14 P~~f~dvVGQe~iv~~L~~~i~~~r-i~ha~Lf~GP~GtGKTTlAriLAk~Lnce~~~~~~pCg~C---------~sC~~ 83 (484)
T PRK14956 14 PQFFRDVIHQDLAIGALQNALKSGK-IGHAYIFFGPRGVGKTTIARILAKRLNCENPIGNEPCNEC---------TSCLE 83 (484)
T ss_pred CCCHHHHhChHHHHHHHHHHHHcCC-CCeEEEEECCCCCCHHHHHHHHHHhcCcccccCccccCCC---------cHHHH
Confidence 3445679999999999999886432 2356899999999999999999986533211 001110 00000
Q ss_pred HHHHHHHHHhcCcc-ccCCCCChHHHHHH-----hcCCcEEEEEeCCCCh--HHHHHHHhccCCCCCCCEEEEEe-CCch
Q 002220 259 LRDRVVSEIFQEDI-KIGTPYLPDYIVER-----LNRMKVLTVLDDVNKV--RQLHYLACVLDQFGPGSRIIITT-RDKR 329 (951)
Q Consensus 259 l~~~il~~l~~~~~-~~~~~~~~~~l~~~-----l~~~~~LlVlDdv~~~--~~~~~l~~~~~~~~~gs~IlvTt-R~~~ 329 (951)
+.......+..-+. .....+....+.+. ..++.-++|+|+++.. ..++.++..+........+|.+| ....
T Consensus 84 i~~g~~~dviEIdaas~~gVd~IReL~e~l~~~p~~g~~KV~IIDEah~Ls~~A~NALLKtLEEPp~~viFILaTte~~k 163 (484)
T PRK14956 84 ITKGISSDVLEIDAASNRGIENIRELRDNVKFAPMGGKYKVYIIDEVHMLTDQSFNALLKTLEEPPAHIVFILATTEFHK 163 (484)
T ss_pred HHccCCccceeechhhcccHHHHHHHHHHHHhhhhcCCCEEEEEechhhcCHHHHHHHHHHhhcCCCceEEEeecCChhh
Confidence 00000000000000 00000000111111 2345679999999744 45777776665444455555444 4344
Q ss_pred hhhhcCCCccceEEcCCCChhhhHHHHhhhhccCCCCChhHHHHHHHHHHHcCCCch
Q 002220 330 ILDDFGVCDTDIYEVNKLRFHEALVLFSNFAFKENQCPGDLLALLERVLKYANGNPL 386 (951)
Q Consensus 330 v~~~~~~~~~~~~~l~~L~~~~a~~Lf~~~~~~~~~~~~~~~~~~~~i~~~~~g~PL 386 (951)
+..... .....|.+.+++.++..+.+.+.+-..... -..+....|++.++|.+-
T Consensus 164 I~~TI~-SRCq~~~f~~ls~~~i~~~L~~i~~~Egi~--~e~eAL~~Ia~~S~Gd~R 217 (484)
T PRK14956 164 IPETIL-SRCQDFIFKKVPLSVLQDYSEKLCKIENVQ--YDQEGLFWIAKKGDGSVR 217 (484)
T ss_pred ccHHHH-hhhheeeecCCCHHHHHHHHHHHHHHcCCC--CCHHHHHHHHHHcCChHH
Confidence 432211 112679999999999999888776433221 123567889999999874
No 84
>PF13191 AAA_16: AAA ATPase domain; PDB: 2V1U_A.
Probab=98.33 E-value=6.3e-07 Score=89.20 Aligned_cols=50 Identities=28% Similarity=0.422 Sum_probs=35.5
Q ss_pred CcccchhhHHHHHHhhc-cCCCCcEEEEEEecCCChhHHHHHHHHHHhhcc
Q 002220 187 GFVGLNSRIQKIKSLLC-IGLPDFRTIGIWGMGGIGKTTLAGAVFKLISRE 236 (951)
Q Consensus 187 ~~vGr~~~~~~l~~~L~-~~~~~~~vv~I~G~gGiGKTtLA~~~~~~~~~~ 236 (951)
.||||+++++++...+. ......+.+.|+|.+|+|||+|+++++.++...
T Consensus 1 ~fvgR~~e~~~l~~~l~~~~~~~~~~~ll~G~~G~GKT~ll~~~~~~~~~~ 51 (185)
T PF13191_consen 1 QFVGREEEIERLRDLLDAAQSGSPRNLLLTGESGSGKTSLLRALLDRLAER 51 (185)
T ss_dssp --TT-HHHHHHHHHTTGGTSS-----EEE-B-TTSSHHHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHHHcCCCcEEEEECCCCCCHHHHHHHHHHHHHhc
Confidence 48999999999999994 333557899999999999999999999987766
No 85
>PRK09112 DNA polymerase III subunit delta'; Validated
Probab=98.30 E-value=2.1e-05 Score=85.23 Aligned_cols=198 Identities=15% Similarity=0.097 Sum_probs=113.2
Q ss_pred cCCCCCCcccchhhHHHHHHhhccCCCCcEEEEEEecCCChhHHHHHHHHHHhhcc----ccceeecccccchhcCCCCh
Q 002220 181 ASTYSDGFVGLNSRIQKIKSLLCIGLPDFRTIGIWGMGGIGKTTLAGAVFKLISRE----FEGKCFMPNVREESENGGGL 256 (951)
Q Consensus 181 ~~~~~~~~vGr~~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~~~~~~~~~----f~~~~~~~~~~~~~~~~~~~ 256 (951)
.|.....++|-+...+.+...+..+ .-...+.|+|+.|+||||+|+.+++.+-.. +....... ..+-
T Consensus 18 ~P~~~~~l~Gh~~a~~~L~~a~~~g-rl~ha~L~~G~~G~GKttlA~~lA~~Llc~~~~~~~~~~~~~--------~~~~ 88 (351)
T PRK09112 18 SPSENTRLFGHEEAEAFLAQAYREG-KLHHALLFEGPEGIGKATLAFHLANHILSHPDPAEAPETLAD--------PDPA 88 (351)
T ss_pred CCCchhhccCcHHHHHHHHHHHHcC-CCCeeEeeECCCCCCHHHHHHHHHHHHcCCCccccCccccCC--------CCCC
Confidence 4556678999999999999988643 234678999999999999999999865431 11110000 0001
Q ss_pred HHHHHHHHHH-------HhcC-cccc--CCCCC-hHHH---HHHh-----cCCcEEEEEeCCCCh--HHHHHHHhccCCC
Q 002220 257 VYLRDRVVSE-------IFQE-DIKI--GTPYL-PDYI---VERL-----NRMKVLTVLDDVNKV--RQLHYLACVLDQF 315 (951)
Q Consensus 257 ~~l~~~il~~-------l~~~-~~~~--~~~~~-~~~l---~~~l-----~~~~~LlVlDdv~~~--~~~~~l~~~~~~~ 315 (951)
....+.+... +... +... ..... .+.+ .+.+ .+++-++|+|+++.. ...+.++..+...
T Consensus 89 c~~c~~i~~~~hPdl~~l~~~~~~~~~~~~~~I~vd~iR~l~~~l~~~~~~g~~rVviIDeAd~l~~~aanaLLk~LEEp 168 (351)
T PRK09112 89 SPVWRQIAQGAHPNLLHITRPFDEKTGKFKTAITVDEIRRVGHFLSQTSGDGNWRIVIIDPADDMNRNAANAILKTLEEP 168 (351)
T ss_pred CHHHHHHHcCCCCCEEEeecccccccccccccCCHHHHHHHHHHhhhccccCCceEEEEEchhhcCHHHHHHHHHHHhcC
Confidence 1111222111 0000 0000 00011 1333 2232 245678999999744 3456666555544
Q ss_pred CCCCEEE-EEeCCchhhhhcCCCccceEEcCCCChhhhHHHHhhhhccCCCCChhHHHHHHHHHHHcCCCchHHHHHh
Q 002220 316 GPGSRII-ITTRDKRILDDFGVCDTDIYEVNKLRFHEALVLFSNFAFKENQCPGDLLALLERVLKYANGNPLALRVLG 392 (951)
Q Consensus 316 ~~gs~Il-vTtR~~~v~~~~~~~~~~~~~l~~L~~~~a~~Lf~~~~~~~~~~~~~~~~~~~~i~~~~~g~PLal~~~~ 392 (951)
.....+| +|++...+...... ....+.+.+++.++..+++...+.... -..+.+..+++.++|.|.....+.
T Consensus 169 p~~~~fiLit~~~~~llptIrS-Rc~~i~l~pl~~~~~~~~L~~~~~~~~----~~~~~~~~i~~~s~G~pr~Al~ll 241 (351)
T PRK09112 169 PARALFILISHSSGRLLPTIRS-RCQPISLKPLDDDELKKALSHLGSSQG----SDGEITEALLQRSKGSVRKALLLL 241 (351)
T ss_pred CCCceEEEEECChhhccHHHHh-hccEEEecCCCHHHHHHHHHHhhcccC----CCHHHHHHHHHHcCCCHHHHHHHH
Confidence 4455544 44444334322211 227899999999999999987542211 112456788999999998655443
No 86
>PRK06645 DNA polymerase III subunits gamma and tau; Validated
Probab=98.30 E-value=1.5e-05 Score=90.05 Aligned_cols=186 Identities=17% Similarity=0.183 Sum_probs=108.9
Q ss_pred CCCCCCcccchhhHHHHHHhhccCCCCcEEEEEEecCCChhHHHHHHHHHHhhcccc-------ceeecc----------
Q 002220 182 STYSDGFVGLNSRIQKIKSLLCIGLPDFRTIGIWGMGGIGKTTLAGAVFKLISREFE-------GKCFMP---------- 244 (951)
Q Consensus 182 ~~~~~~~vGr~~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~~~~~~~~~f~-------~~~~~~---------- 244 (951)
|....++||-+.-++.|...+..+ .-.+.+.++|+.|+||||+|+.+++.+-..-. ..|..+
T Consensus 17 P~~f~dliGq~~vv~~L~~ai~~~-ri~~a~Lf~Gp~G~GKTT~ArilAk~Lnc~~~~~~~~~~~~C~~C~~C~~i~~~~ 95 (507)
T PRK06645 17 PSNFAELQGQEVLVKVLSYTILND-RLAGGYLLTGIRGVGKTTSARIIAKAVNCSALITENTTIKTCEQCTNCISFNNHN 95 (507)
T ss_pred CCCHHHhcCcHHHHHHHHHHHHcC-CCCceEEEECCCCCCHHHHHHHHHHHhcCccccccCcCcCCCCCChHHHHHhcCC
Confidence 444567899999999998877533 23467889999999999999999986532110 001110
Q ss_pred --cccchhc-CCCChHHHHHHHHHHHhcCccccCCCCChHHHHHHhcCCcEEEEEeCCCCh--HHHHHHHhccCCCCCCC
Q 002220 245 --NVREESE-NGGGLVYLRDRVVSEIFQEDIKIGTPYLPDYIVERLNRMKVLTVLDDVNKV--RQLHYLACVLDQFGPGS 319 (951)
Q Consensus 245 --~~~~~~~-~~~~~~~l~~~il~~l~~~~~~~~~~~~~~~l~~~l~~~~~LlVlDdv~~~--~~~~~l~~~~~~~~~gs 319 (951)
++.+... ...++..+.. ++.... ..-..+++-++|+|+++.. ..++.+...+....+.+
T Consensus 96 h~Dv~eidaas~~~vd~Ir~-iie~a~---------------~~P~~~~~KVvIIDEa~~Ls~~a~naLLk~LEepp~~~ 159 (507)
T PRK06645 96 HPDIIEIDAASKTSVDDIRR-IIESAE---------------YKPLQGKHKIFIIDEVHMLSKGAFNALLKTLEEPPPHI 159 (507)
T ss_pred CCcEEEeeccCCCCHHHHHH-HHHHHH---------------hccccCCcEEEEEEChhhcCHHHHHHHHHHHhhcCCCE
Confidence 0000000 0111111111 111100 0012346678999999754 44777776666545566
Q ss_pred EEEE-EeCCchhhhhcCCCccceEEcCCCChhhhHHHHhhhhccCCCCChhHHHHHHHHHHHcCCCchH
Q 002220 320 RIII-TTRDKRILDDFGVCDTDIYEVNKLRFHEALVLFSNFAFKENQCPGDLLALLERVLKYANGNPLA 387 (951)
Q Consensus 320 ~Ilv-TtR~~~v~~~~~~~~~~~~~l~~L~~~~a~~Lf~~~~~~~~~~~~~~~~~~~~i~~~~~g~PLa 387 (951)
.+|+ ||+...+...... ....+++.+++.++..+.+.+.+-...... ..+.+..|++.++|.+--
T Consensus 160 vfI~aTte~~kI~~tI~S-Rc~~~ef~~ls~~el~~~L~~i~~~egi~i--e~eAL~~Ia~~s~GslR~ 225 (507)
T PRK06645 160 IFIFATTEVQKIPATIIS-RCQRYDLRRLSFEEIFKLLEYITKQENLKT--DIEALRIIAYKSEGSARD 225 (507)
T ss_pred EEEEEeCChHHhhHHHHh-cceEEEccCCCHHHHHHHHHHHHHHcCCCC--CHHHHHHHHHHcCCCHHH
Confidence 6554 5454444433211 126799999999999999988875433211 124567788899987643
No 87
>PRK08691 DNA polymerase III subunits gamma and tau; Validated
Probab=98.30 E-value=7.7e-06 Score=93.83 Aligned_cols=193 Identities=15% Similarity=0.110 Sum_probs=106.8
Q ss_pred CCCCCCcccchhhHHHHHHhhccCCCCcEEEEEEecCCChhHHHHHHHHHHhhccccceeecccccchhcCCCChHHHHH
Q 002220 182 STYSDGFVGLNSRIQKIKSLLCIGLPDFRTIGIWGMGGIGKTTLAGAVFKLISREFEGKCFMPNVREESENGGGLVYLRD 261 (951)
Q Consensus 182 ~~~~~~~vGr~~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~l~~ 261 (951)
|...+++||.+..++.|..++..+ .-.+.+.++|..|+||||+|+.+++.+-..-.. -+..+... ....
T Consensus 12 P~tFddIIGQe~vv~~L~~ai~~~-rl~Ha~Lf~GP~GvGKTTlAriLAk~LnC~~~~-~~~pCg~C---------~sCr 80 (709)
T PRK08691 12 PKTFADLVGQEHVVKALQNALDEG-RLHHAYLLTGTRGVGKTTIARILAKSLNCENAQ-HGEPCGVC---------QSCT 80 (709)
T ss_pred CCCHHHHcCcHHHHHHHHHHHHcC-CCCeEEEEECCCCCcHHHHHHHHHHHhcccCCC-CCCCCccc---------HHHH
Confidence 445578999999999999998643 234678999999999999999998854321100 00000000 0000
Q ss_pred HHHHHHhcCccccC-CCCCh-HHHHHHh--------cCCcEEEEEeCCCChH--HHHHHHhccCCCCCCCEEEEEeCCc-
Q 002220 262 RVVSEIFQEDIKIG-TPYLP-DYIVERL--------NRMKVLTVLDDVNKVR--QLHYLACVLDQFGPGSRIIITTRDK- 328 (951)
Q Consensus 262 ~il~~l~~~~~~~~-~~~~~-~~l~~~l--------~~~~~LlVlDdv~~~~--~~~~l~~~~~~~~~gs~IlvTtR~~- 328 (951)
.+...-...-.... ..... +.+++.+ .+++-++|+|+++... ....++..+......+++|++|.+.
T Consensus 81 ~i~~g~~~DvlEidaAs~~gVd~IRelle~a~~~P~~gk~KVIIIDEad~Ls~~A~NALLKtLEEPp~~v~fILaTtd~~ 160 (709)
T PRK08691 81 QIDAGRYVDLLEIDAASNTGIDNIREVLENAQYAPTAGKYKVYIIDEVHMLSKSAFNAMLKTLEEPPEHVKFILATTDPH 160 (709)
T ss_pred HHhccCccceEEEeccccCCHHHHHHHHHHHHhhhhhCCcEEEEEECccccCHHHHHHHHHHHHhCCCCcEEEEEeCCcc
Confidence 00000000000000 00000 2222221 2456689999997543 3555555554434566677766544
Q ss_pred hhhhhcCCCccceEEcCCCChhhhHHHHhhhhccCCCCChhHHHHHHHHHHHcCCCchHH
Q 002220 329 RILDDFGVCDTDIYEVNKLRFHEALVLFSNFAFKENQCPGDLLALLERVLKYANGNPLAL 388 (951)
Q Consensus 329 ~v~~~~~~~~~~~~~l~~L~~~~a~~Lf~~~~~~~~~~~~~~~~~~~~i~~~~~g~PLal 388 (951)
.+..... .....+.+.+++.++..+.+.+.+-...... ..+.++.|++.++|.+.-+
T Consensus 161 kL~~TIr-SRC~~f~f~~Ls~eeI~~~L~~Il~kEgi~i--d~eAL~~Ia~~A~GslRdA 217 (709)
T PRK08691 161 KVPVTVL-SRCLQFVLRNMTAQQVADHLAHVLDSEKIAY--EPPALQLLGRAAAGSMRDA 217 (709)
T ss_pred ccchHHH-HHHhhhhcCCCCHHHHHHHHHHHHHHcCCCc--CHHHHHHHHHHhCCCHHHH
Confidence 2221110 1115688999999999999887764333211 2256788899999887443
No 88
>PRK14957 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.30 E-value=2e-05 Score=89.71 Aligned_cols=185 Identities=16% Similarity=0.110 Sum_probs=107.7
Q ss_pred CCCCCCcccchhhHHHHHHhhccCCCCcEEEEEEecCCChhHHHHHHHHHHhhccc---------------------cce
Q 002220 182 STYSDGFVGLNSRIQKIKSLLCIGLPDFRTIGIWGMGGIGKTTLAGAVFKLISREF---------------------EGK 240 (951)
Q Consensus 182 ~~~~~~~vGr~~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~~~~~~~~~f---------------------~~~ 240 (951)
|...++++|-+..++.|...+..+ .-.+.+.++|+.|+||||+|+.+++.+.... ...
T Consensus 12 P~~f~diiGq~~~v~~L~~~i~~~-rl~ha~Lf~Gp~GvGKTTlAr~lAk~L~c~~~~~~~pCg~C~sC~~i~~~~~~dl 90 (546)
T PRK14957 12 PQSFAEVAGQQHALNSLVHALETQ-KVHHAYLFTGTRGVGKTTLGRLLAKCLNCKTGVTAEPCNKCENCVAINNNSFIDL 90 (546)
T ss_pred cCcHHHhcCcHHHHHHHHHHHHcC-CCCeEEEEECCCCCCHHHHHHHHHHHhCCCCCCCCCCCcccHHHHHHhcCCCCce
Confidence 344567999999999999888533 2345678999999999999999998653211 111
Q ss_pred eecccccchhcCCCChHHHHHHHHHHHhcCccccCCCCChHHHHHHhcCCcEEEEEeCCCCh--HHHHHHHhccCCCCCC
Q 002220 241 CFMPNVREESENGGGLVYLRDRVVSEIFQEDIKIGTPYLPDYIVERLNRMKVLTVLDDVNKV--RQLHYLACVLDQFGPG 318 (951)
Q Consensus 241 ~~~~~~~~~~~~~~~~~~l~~~il~~l~~~~~~~~~~~~~~~l~~~l~~~~~LlVlDdv~~~--~~~~~l~~~~~~~~~g 318 (951)
+.+.. .. ..++..+ +.++..+.. .-..+++-++|+|+++.. ...+.++..+......
T Consensus 91 ieida----as-~~gvd~i-r~ii~~~~~---------------~p~~g~~kViIIDEa~~ls~~a~naLLK~LEepp~~ 149 (546)
T PRK14957 91 IEIDA----AS-RTGVEET-KEILDNIQY---------------MPSQGRYKVYLIDEVHMLSKQSFNALLKTLEEPPEY 149 (546)
T ss_pred EEeec----cc-ccCHHHH-HHHHHHHHh---------------hhhcCCcEEEEEechhhccHHHHHHHHHHHhcCCCC
Confidence 11100 00 1111111 111111100 012346679999999744 4466777666655556
Q ss_pred CEEEEEeCC-chhhhhcCCCccceEEcCCCChhhhHHHHhhhhccCCCCChhHHHHHHHHHHHcCCCch-HHHHH
Q 002220 319 SRIIITTRD-KRILDDFGVCDTDIYEVNKLRFHEALVLFSNFAFKENQCPGDLLALLERVLKYANGNPL-ALRVL 391 (951)
Q Consensus 319 s~IlvTtR~-~~v~~~~~~~~~~~~~l~~L~~~~a~~Lf~~~~~~~~~~~~~~~~~~~~i~~~~~g~PL-al~~~ 391 (951)
+.+|++|.+ ..+..... .....+++.+++.++..+.+.+.+-.... ....+....|++.++|.+- |+..+
T Consensus 150 v~fIL~Ttd~~kil~tI~-SRc~~~~f~~Ls~~eI~~~L~~il~~egi--~~e~~Al~~Ia~~s~GdlR~alnlL 221 (546)
T PRK14957 150 VKFILATTDYHKIPVTIL-SRCIQLHLKHISQADIKDQLKIILAKENI--NSDEQSLEYIAYHAKGSLRDALSLL 221 (546)
T ss_pred ceEEEEECChhhhhhhHH-HheeeEEeCCCCHHHHHHHHHHHHHHcCC--CCCHHHHHHHHHHcCCCHHHHHHHH
Confidence 666654443 33332211 11278999999999988888775532221 1122456778888888664 43333
No 89
>PRK05564 DNA polymerase III subunit delta'; Validated
Probab=98.29 E-value=1.9e-05 Score=85.41 Aligned_cols=178 Identities=17% Similarity=0.192 Sum_probs=110.2
Q ss_pred CCcccchhhHHHHHHhhccCCCCcEEEEEEecCCChhHHHHHHHHHHhhc------cccceeecccccchhcCCCChHHH
Q 002220 186 DGFVGLNSRIQKIKSLLCIGLPDFRTIGIWGMGGIGKTTLAGAVFKLISR------EFEGKCFMPNVREESENGGGLVYL 259 (951)
Q Consensus 186 ~~~vGr~~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~~~~~~~~------~f~~~~~~~~~~~~~~~~~~~~~l 259 (951)
++++|.+..++.+...+..+ .-.+...++|+.|+||||+|+.+++.+-. +.+...|.. .. .....+..+
T Consensus 4 ~~i~g~~~~~~~l~~~~~~~-~~~ha~Lf~G~~G~Gk~~la~~~a~~l~c~~~~~~h~D~~~~~~-~~---~~~i~v~~i 78 (313)
T PRK05564 4 HTIIGHENIKNRIKNSIIKN-RFSHAHIIVGEDGIGKSLLAKEIALKILGKSQQREYVDIIEFKP-IN---KKSIGVDDI 78 (313)
T ss_pred hhccCcHHHHHHHHHHHHcC-CCCceEEeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCeEEecc-cc---CCCCCHHHH
Confidence 46789888899999988533 33567889999999999999999986522 223223321 00 002222232
Q ss_pred HHHHHHHHhcCccccCCCCChHHHHHHhcCCcEEEEEeCC--CChHHHHHHHhccCCCCCCCEEEEEeCCchhh-hhcCC
Q 002220 260 RDRVVSEIFQEDIKIGTPYLPDYIVERLNRMKVLTVLDDV--NKVRQLHYLACVLDQFGPGSRIIITTRDKRIL-DDFGV 336 (951)
Q Consensus 260 ~~~il~~l~~~~~~~~~~~~~~~l~~~l~~~~~LlVlDdv--~~~~~~~~l~~~~~~~~~gs~IlvTtR~~~v~-~~~~~ 336 (951)
. .+...+.... ..+++-++|+|++ .+...++.++..+....+++.+|++|.+.+.. ....
T Consensus 79 r-~~~~~~~~~p---------------~~~~~kv~iI~~ad~m~~~a~naLLK~LEepp~~t~~il~~~~~~~ll~TI~- 141 (313)
T PRK05564 79 R-NIIEEVNKKP---------------YEGDKKVIIIYNSEKMTEQAQNAFLKTIEEPPKGVFIILLCENLEQILDTIK- 141 (313)
T ss_pred H-HHHHHHhcCc---------------ccCCceEEEEechhhcCHHHHHHHHHHhcCCCCCeEEEEEeCChHhCcHHHH-
Confidence 2 2222221100 1134446666665 45666888888887777888888888765322 2111
Q ss_pred CccceEEcCCCChhhhHHHHhhhhccCCCCChhHHHHHHHHHHHcCCCchHHHHH
Q 002220 337 CDTDIYEVNKLRFHEALVLFSNFAFKENQCPGDLLALLERVLKYANGNPLALRVL 391 (951)
Q Consensus 337 ~~~~~~~l~~L~~~~a~~Lf~~~~~~~~~~~~~~~~~~~~i~~~~~g~PLal~~~ 391 (951)
.....+++.++++++....+.+...+ .. .+.++.++..++|.|..+...
T Consensus 142 SRc~~~~~~~~~~~~~~~~l~~~~~~---~~---~~~~~~l~~~~~g~~~~a~~~ 190 (313)
T PRK05564 142 SRCQIYKLNRLSKEEIEKFISYKYND---IK---EEEKKSAIAFSDGIPGKVEKF 190 (313)
T ss_pred hhceeeeCCCcCHHHHHHHHHHHhcC---CC---HHHHHHHHHHcCCCHHHHHHH
Confidence 01278999999999998888765411 11 134678899999988755433
No 90
>PRK07940 DNA polymerase III subunit delta'; Validated
Probab=98.29 E-value=2.3e-05 Score=86.11 Aligned_cols=178 Identities=11% Similarity=0.072 Sum_probs=105.2
Q ss_pred CCcccchhhHHHHHHhhccCCC--------CcEEEEEEecCCChhHHHHHHHHHHhhccc--------------------
Q 002220 186 DGFVGLNSRIQKIKSLLCIGLP--------DFRTIGIWGMGGIGKTTLAGAVFKLISREF-------------------- 237 (951)
Q Consensus 186 ~~~vGr~~~~~~l~~~L~~~~~--------~~~vv~I~G~gGiGKTtLA~~~~~~~~~~f-------------------- 237 (951)
++++|-+.-++.|.+.+..+.. -.+.+.++|++|+|||++|+.++..+-...
T Consensus 5 ~~IiGq~~~~~~L~~~i~~~~~~~~~~~~~l~ha~Lf~Gp~G~GKt~lA~~lA~~l~c~~~~~~~Cg~C~~C~~~~~~~h 84 (394)
T PRK07940 5 DDLVGQEAVVAELRAAARAARADVAAAGSGMTHAWLFTGPPGSGRSVAARAFAAALQCTDPDEPGCGECRACRTVLAGTH 84 (394)
T ss_pred hhccChHHHHHHHHHHHHhccccccccCCCCCeEEEEECCCCCcHHHHHHHHHHHhCCCCCCCCCCCCCHHHHHHhcCCC
Confidence 4688999989999998864421 356788999999999999999988543221
Q ss_pred cceeecccccchhcCCCChHHHHHHHHHHHhcCccccCCCCChHHHHHHhcCCcEEEEEeCCCCh--HHHHHHHhccCCC
Q 002220 238 EGKCFMPNVREESENGGGLVYLRDRVVSEIFQEDIKIGTPYLPDYIVERLNRMKVLTVLDDVNKV--RQLHYLACVLDQF 315 (951)
Q Consensus 238 ~~~~~~~~~~~~~~~~~~~~~l~~~il~~l~~~~~~~~~~~~~~~l~~~l~~~~~LlVlDdv~~~--~~~~~l~~~~~~~ 315 (951)
+...++.-- ....++..+ +.+...+... -..+++-++|+|+++.. .....+...+...
T Consensus 85 pD~~~i~~~----~~~i~i~~i-R~l~~~~~~~---------------p~~~~~kViiIDead~m~~~aanaLLk~LEep 144 (394)
T PRK07940 85 PDVRVVAPE----GLSIGVDEV-RELVTIAARR---------------PSTGRWRIVVIEDADRLTERAANALLKAVEEP 144 (394)
T ss_pred CCEEEeccc----cccCCHHHH-HHHHHHHHhC---------------cccCCcEEEEEechhhcCHHHHHHHHHHhhcC
Confidence 111111100 001111111 1111111100 01234557888999744 3345566655555
Q ss_pred CCCCEEEEEeCCc-hhhhhcCCCccceEEcCCCChhhhHHHHhhhhccCCCCChhHHHHHHHHHHHcCCCchHHHHH
Q 002220 316 GPGSRIIITTRDK-RILDDFGVCDTDIYEVNKLRFHEALVLFSNFAFKENQCPGDLLALLERVLKYANGNPLALRVL 391 (951)
Q Consensus 316 ~~gs~IlvTtR~~-~v~~~~~~~~~~~~~l~~L~~~~a~~Lf~~~~~~~~~~~~~~~~~~~~i~~~~~g~PLal~~~ 391 (951)
.+++.+|++|.+. .+..... .....+.+++++.++..+.+.+... . + .+.+..++..++|.|.....+
T Consensus 145 ~~~~~fIL~a~~~~~llpTIr-SRc~~i~f~~~~~~~i~~~L~~~~~---~-~---~~~a~~la~~s~G~~~~A~~l 213 (394)
T PRK07940 145 PPRTVWLLCAPSPEDVLPTIR-SRCRHVALRTPSVEAVAEVLVRRDG---V-D---PETARRAARASQGHIGRARRL 213 (394)
T ss_pred CCCCeEEEEECChHHChHHHH-hhCeEEECCCCCHHHHHHHHHHhcC---C-C---HHHHHHHHHHcCCCHHHHHHH
Confidence 5667676666654 3332221 1127899999999999998875421 1 1 245678899999999755444
No 91
>PTZ00202 tuzin; Provisional
Probab=98.29 E-value=4.7e-06 Score=88.84 Aligned_cols=167 Identities=17% Similarity=0.137 Sum_probs=99.9
Q ss_pred ccCCCCCCcccchhhHHHHHHhhccCC-CCcEEEEEEecCCChhHHHHHHHHHHhhccccceeecccccchhcCCCChHH
Q 002220 180 TASTYSDGFVGLNSRIQKIKSLLCIGL-PDFRTIGIWGMGGIGKTTLAGAVFKLISREFEGKCFMPNVREESENGGGLVY 258 (951)
Q Consensus 180 ~~~~~~~~~vGr~~~~~~l~~~L~~~~-~~~~vv~I~G~gGiGKTtLA~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~ 258 (951)
..|.....|+||+.++..|...|...+ ...+++.|.|++|+|||||++.+..... ...++.+.+ +...
T Consensus 256 ~lPa~~~~FVGReaEla~Lr~VL~~~d~~~privvLtG~~G~GKTTLlR~~~~~l~----~~qL~vNpr-------g~eE 324 (550)
T PTZ00202 256 SAPAVIRQFVSREAEESWVRQVLRRLDTAHPRIVVFTGFRGCGKSSLCRSAVRKEG----MPAVFVDVR-------GTED 324 (550)
T ss_pred CCCCCccCCCCcHHHHHHHHHHHhccCCCCceEEEEECCCCCCHHHHHHHHHhcCC----ceEEEECCC-------CHHH
Confidence 346667899999999999999996433 3457999999999999999999997553 224444332 4578
Q ss_pred HHHHHHHHHhcCccccCCCCChHHHHHHh-----c-CCcEEEEEeCCCChHHHHHH---HhccCCCCCCCEEEEEeCCch
Q 002220 259 LRDRVVSEIFQEDIKIGTPYLPDYIVERL-----N-RMKVLTVLDDVNKVRQLHYL---ACVLDQFGPGSRIIITTRDKR 329 (951)
Q Consensus 259 l~~~il~~l~~~~~~~~~~~~~~~l~~~l-----~-~~~~LlVlDdv~~~~~~~~l---~~~~~~~~~gs~IlvTtR~~~ 329 (951)
+.+.++.+++..... ...+....|.+.+ . +++.+||+- +.+...+... ...+.....-|+|++----+.
T Consensus 325 lLr~LL~ALGV~p~~-~k~dLLrqIqeaLl~~~~e~GrtPVLII~-lreg~~l~rvyne~v~la~drr~ch~v~evples 402 (550)
T PTZ00202 325 TLRSVVKALGVPNVE-ACGDLLDFISEACRRAKKMNGETPLLVLK-LREGSSLQRVYNEVVALACDRRLCHVVIEVPLES 402 (550)
T ss_pred HHHHHHHHcCCCCcc-cHHHHHHHHHHHHHHHHHhCCCCEEEEEE-ecCCCcHHHHHHHHHHHHccchhheeeeeehHhh
Confidence 888899988863221 1111223343333 2 667777763 1111111111 111222234566776443332
Q ss_pred hhh-hcCCCccceEEcCCCChhhhHHHHhhh
Q 002220 330 ILD-DFGVCDTDIYEVNKLRFHEALVLFSNF 359 (951)
Q Consensus 330 v~~-~~~~~~~~~~~l~~L~~~~a~~Lf~~~ 359 (951)
+-- ......-..|-++.++.++|.++-...
T Consensus 403 lt~~~~~lprldf~~vp~fsr~qaf~y~~h~ 433 (550)
T PTZ00202 403 LTIANTLLPRLDFYLVPNFSRSQAFAYTQHA 433 (550)
T ss_pred cchhcccCccceeEecCCCCHHHHHHHHhhc
Confidence 211 111111257899999999999876654
No 92
>PLN03150 hypothetical protein; Provisional
Probab=98.28 E-value=1.7e-06 Score=102.21 Aligned_cols=113 Identities=34% Similarity=0.481 Sum_probs=97.0
Q ss_pred CCcEEeeccCCCCccCCcccCCcCCCCCCCCEEeccCCCCC-CcCccCCCCCCCCEEEccCCCCc-ccchhhcCCCCCCE
Q 002220 817 GLRQLSLIGCSELKCSGWVLPTRISKLSSLERLQLSGCEIK-EIPEDIDCLSSLEVLDLSGSKIE-ILPTSIGQLSRLRQ 894 (951)
Q Consensus 817 ~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~l~-~l~~~l~~l~~L~~L~L~~n~l~-~l~~~l~~l~~L~~ 894 (951)
.++.|+|++|.... .+|..+..+++|+.|+|++|.+. .+|..+..+++|+.|+|++|+++ .+|..+.++++|+.
T Consensus 419 ~v~~L~L~~n~L~g----~ip~~i~~L~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~LdLs~N~lsg~iP~~l~~L~~L~~ 494 (623)
T PLN03150 419 FIDGLGLDNQGLRG----FIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTSLRI 494 (623)
T ss_pred EEEEEECCCCCccc----cCCHHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECCCCCCCCCCchHHhcCCCCCE
Confidence 47889999988765 47888999999999999999998 58989999999999999999998 78999999999999
Q ss_pred EeeCCCCCCCcCCCc----cccccEeeeccCcccccCCCcCcc
Q 002220 895 LNLLDCNMLQSIPEL----PRGLLRLNAQNCRRLRSLPELPSC 933 (951)
Q Consensus 895 L~L~~~~~l~~lp~~----~~~L~~L~i~~C~~L~~lp~~~~~ 933 (951)
|+|++|+....+|.. +.++..+++.+++.+...|.+++|
T Consensus 495 L~Ls~N~l~g~iP~~l~~~~~~~~~l~~~~N~~lc~~p~l~~C 537 (623)
T PLN03150 495 LNLNGNSLSGRVPAALGGRLLHRASFNFTDNAGLCGIPGLRAC 537 (623)
T ss_pred EECcCCcccccCChHHhhccccCceEEecCCccccCCCCCCCC
Confidence 999999988888853 345678888888888877665544
No 93
>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]
Probab=98.27 E-value=2.1e-08 Score=99.39 Aligned_cols=175 Identities=24% Similarity=0.238 Sum_probs=92.9
Q ss_pred ccceecccCCcccc--ccccccccccccceeccCCCCCCCcCC-CCCCCCCCcEEecCCCCCCCccCc--ccccCCcccE
Q 002220 608 ENLIALHLPYSEVE--QIWKGQKEAFKLKFIDLHDSHNLTSIP-EPLEAPNLERINLCNCTNLSYIPL--YVQNFHNLGS 682 (951)
Q Consensus 608 ~~L~~L~L~~~~i~--~l~~~~~~l~~L~~L~L~~~~~~~~~~-~~~~l~~L~~L~L~~~~~~~~~~~--~~~~l~~L~~ 682 (951)
..|++|||+.+.|+ ++-.-++.+.+|+.|.|.++.+...+. .+.+-.+|+.|+|+.|..++.... -+.+++.|..
T Consensus 185 sRlq~lDLS~s~it~stl~~iLs~C~kLk~lSlEg~~LdD~I~~~iAkN~~L~~lnlsm~sG~t~n~~~ll~~scs~L~~ 264 (419)
T KOG2120|consen 185 SRLQHLDLSNSVITVSTLHGILSQCSKLKNLSLEGLRLDDPIVNTIAKNSNLVRLNLSMCSGFTENALQLLLSSCSRLDE 264 (419)
T ss_pred hhhHHhhcchhheeHHHHHHHHHHHHhhhhccccccccCcHHHHHHhccccceeeccccccccchhHHHHHHHhhhhHhh
Confidence 45888888888776 333335667777777777665433222 222445566666665554443221 2344555555
Q ss_pred EeccCCCCCcccCCCCCCCCCceeeCcCCCCCCCCCccccceeeccccCCCC----CccCcccccCCCCcEEeccccccc
Q 002220 683 LSLKGCKSLRCFPRNIHFRSPIEIDCAWCVNLTEFPQISGKVVKLRLWYTPI----EEVPSSIECLTNLETLDLRLCERL 758 (951)
Q Consensus 683 L~L~~~~~l~~l~~~~~l~~L~~L~l~~~~~l~~l~~~~~~L~~L~l~~~~l----~~lp~~l~~l~~L~~L~Ls~~~~~ 758 (951)
|+|+.|...+...... +.....+|+.|+++++.- ..+..-...+++|.+||||+|..+
T Consensus 265 LNlsWc~l~~~~Vtv~------------------V~hise~l~~LNlsG~rrnl~~sh~~tL~~rcp~l~~LDLSD~v~l 326 (419)
T KOG2120|consen 265 LNLSWCFLFTEKVTVA------------------VAHISETLTQLNLSGYRRNLQKSHLSTLVRRCPNLVHLDLSDSVML 326 (419)
T ss_pred cCchHhhccchhhhHH------------------HhhhchhhhhhhhhhhHhhhhhhHHHHHHHhCCceeeecccccccc
Confidence 5555543222111100 112334555566555321 122222456888888888888654
Q ss_pred cc-ccccccCCCCCCEEeccCCCCCCccchh---cccCCCCcEEEccc
Q 002220 759 KR-VSTSICKLKSLGSLLLAFCSNLEGFPEI---LEKMELLETLDLER 802 (951)
Q Consensus 759 ~~-~~~~~~~l~~L~~L~l~~~~~~~~~~~~---l~~l~~L~~L~l~~ 802 (951)
.. ....|.+++.|++|.++.|..+ .|+. +...|+|.+|++.+
T Consensus 327 ~~~~~~~~~kf~~L~~lSlsRCY~i--~p~~~~~l~s~psl~yLdv~g 372 (419)
T KOG2120|consen 327 KNDCFQEFFKFNYLQHLSLSRCYDI--IPETLLELNSKPSLVYLDVFG 372 (419)
T ss_pred CchHHHHHHhcchheeeehhhhcCC--ChHHeeeeccCcceEEEEecc
Confidence 43 3344667788888888877632 2322 34455555555544
No 94
>COG1474 CDC6 Cdc6-related protein, AAA superfamily ATPase [DNA replication, recombination, and repair / Posttranslational modification, protein turnover, chaperones]
Probab=98.27 E-value=2.7e-05 Score=84.64 Aligned_cols=202 Identities=15% Similarity=0.203 Sum_probs=119.7
Q ss_pred CCCCCCcccchhhHHHHHHhhcc--CCCCcEEEEEEecCCChhHHHHHHHHHHhhccccc--eeecccccchhcCCCChH
Q 002220 182 STYSDGFVGLNSRIQKIKSLLCI--GLPDFRTIGIWGMGGIGKTTLAGAVFKLISREFEG--KCFMPNVREESENGGGLV 257 (951)
Q Consensus 182 ~~~~~~~vGr~~~~~~l~~~L~~--~~~~~~vv~I~G~gGiGKTtLA~~~~~~~~~~f~~--~~~~~~~~~~~~~~~~~~ 257 (951)
...++.+.+||.+++++...|.. ......-+.|+|.+|+|||+.++.+++++...... .+++.+.. .....
T Consensus 13 ~~iP~~l~~Re~ei~~l~~~l~~~~~~~~p~n~~iyG~~GTGKT~~~~~v~~~l~~~~~~~~~~yINc~~-----~~t~~ 87 (366)
T COG1474 13 DYIPEELPHREEEINQLASFLAPALRGERPSNIIIYGPTGTGKTATVKFVMEELEESSANVEVVYINCLE-----LRTPY 87 (366)
T ss_pred CCCcccccccHHHHHHHHHHHHHHhcCCCCccEEEECCCCCCHhHHHHHHHHHHHhhhccCceEEEeeee-----CCCHH
Confidence 34456699999999999988752 11223348999999999999999999987665433 46664332 44556
Q ss_pred HHHHHHHHHHhcCccccCCCCCh-HHHHHHhc--CCcEEEEEeCCCChHHH--HHHHhccCCCCC-CCEE--EEEeCCch
Q 002220 258 YLRDRVVSEIFQEDIKIGTPYLP-DYIVERLN--RMKVLTVLDDVNKVRQL--HYLACVLDQFGP-GSRI--IITTRDKR 329 (951)
Q Consensus 258 ~l~~~il~~l~~~~~~~~~~~~~-~~l~~~l~--~~~~LlVlDdv~~~~~~--~~l~~~~~~~~~-gs~I--lvTtR~~~ 329 (951)
.+...++.++............. +.+.+.+. ++.+++|||+++....- +.+-..+.+... .++| |..+-+..
T Consensus 88 ~i~~~i~~~~~~~p~~g~~~~~~~~~l~~~~~~~~~~~IvvLDEid~L~~~~~~~LY~L~r~~~~~~~~v~vi~i~n~~~ 167 (366)
T COG1474 88 QVLSKILNKLGKVPLTGDSSLEILKRLYDNLSKKGKTVIVILDEVDALVDKDGEVLYSLLRAPGENKVKVSIIAVSNDDK 167 (366)
T ss_pred HHHHHHHHHcCCCCCCCCchHHHHHHHHHHHHhcCCeEEEEEcchhhhccccchHHHHHHhhccccceeEEEEEEeccHH
Confidence 77777777775222211121222 55555553 57899999999643321 222222222222 3433 33444433
Q ss_pred h--------hhhcCCCccceEEcCCCChhhhHHHHhhhh---ccCCCCChhHHHHHHHHHHHcCC-CchHHHHH
Q 002220 330 I--------LDDFGVCDTDIYEVNKLRFHEALVLFSNFA---FKENQCPGDLLALLERVLKYANG-NPLALRVL 391 (951)
Q Consensus 330 v--------~~~~~~~~~~~~~l~~L~~~~a~~Lf~~~~---~~~~~~~~~~~~~~~~i~~~~~g-~PLal~~~ 391 (951)
. ....+. ..+..++-+.+|-.+.+..++ |......++..+++..++..-+| .=.|+..+
T Consensus 168 ~~~~ld~rv~s~l~~---~~I~F~pY~a~el~~Il~~R~~~~~~~~~~~~~vl~lia~~~a~~~GDAR~aidil 238 (366)
T COG1474 168 FLDYLDPRVKSSLGP---SEIVFPPYTAEELYDILRERVEEGFSAGVIDDDVLKLIAALVAAESGDARKAIDIL 238 (366)
T ss_pred HHHHhhhhhhhccCc---ceeeeCCCCHHHHHHHHHHHHHhhccCCCcCccHHHHHHHHHHHcCccHHHHHHHH
Confidence 2 222333 447889999999999998776 34444444555555555555554 33444443
No 95
>PRK14962 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.25 E-value=2.1e-05 Score=88.64 Aligned_cols=187 Identities=17% Similarity=0.133 Sum_probs=106.2
Q ss_pred CCCCCCcccchhhHHHHHHhhccCCCCcEEEEEEecCCChhHHHHHHHHHHhhcc----cc-----------------ce
Q 002220 182 STYSDGFVGLNSRIQKIKSLLCIGLPDFRTIGIWGMGGIGKTTLAGAVFKLISRE----FE-----------------GK 240 (951)
Q Consensus 182 ~~~~~~~vGr~~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~~~~~~~~~----f~-----------------~~ 240 (951)
|...+++||.+...+.|...+..+ .-.+.+.++|++|+||||+|+.+++.+... +. ..
T Consensus 10 P~~~~divGq~~i~~~L~~~i~~~-~l~~~~Lf~GPpGtGKTTlA~~lA~~l~~~~~~~~~pc~~c~~c~~i~~g~~~dv 88 (472)
T PRK14962 10 PKTFSEVVGQDHVKKLIINALKKN-SISHAYIFAGPRGTGKTTVARILAKSLNCENRKGVEPCNECRACRSIDEGTFMDV 88 (472)
T ss_pred CCCHHHccCcHHHHHHHHHHHHcC-CCCeEEEEECCCCCCHHHHHHHHHHHhccccCCCCCCCcccHHHHHHhcCCCCcc
Confidence 444567999998888888877533 223568899999999999999999864321 00 00
Q ss_pred eecccccchhcCCCChHHHHHHHHHHHhcCccccCCCCChHHHHHHhcCCcEEEEEeCCCCh--HHHHHHHhccCCCCCC
Q 002220 241 CFMPNVREESENGGGLVYLRDRVVSEIFQEDIKIGTPYLPDYIVERLNRMKVLTVLDDVNKV--RQLHYLACVLDQFGPG 318 (951)
Q Consensus 241 ~~~~~~~~~~~~~~~~~~l~~~il~~l~~~~~~~~~~~~~~~l~~~l~~~~~LlVlDdv~~~--~~~~~l~~~~~~~~~g 318 (951)
..+.. +. ..++..+. .+...... ....+++-++|+|+++.. ...+.+...+......
T Consensus 89 ~el~a----a~-~~gid~iR-~i~~~~~~---------------~p~~~~~kVvIIDE~h~Lt~~a~~~LLk~LE~p~~~ 147 (472)
T PRK14962 89 IELDA----AS-NRGIDEIR-KIRDAVGY---------------RPMEGKYKVYIIDEVHMLTKEAFNALLKTLEEPPSH 147 (472)
T ss_pred EEEeC----cc-cCCHHHHH-HHHHHHhh---------------ChhcCCeEEEEEEChHHhHHHHHHHHHHHHHhCCCc
Confidence 11100 00 11122111 11111100 001245679999999744 3455666655543444
Q ss_pred CEEEEEeCC-chhhhhcCCCccceEEcCCCChhhhHHHHhhhhccCCCCChhHHHHHHHHHHHcCCC-chHHHHHhh
Q 002220 319 SRIIITTRD-KRILDDFGVCDTDIYEVNKLRFHEALVLFSNFAFKENQCPGDLLALLERVLKYANGN-PLALRVLGS 393 (951)
Q Consensus 319 s~IlvTtR~-~~v~~~~~~~~~~~~~l~~L~~~~a~~Lf~~~~~~~~~~~~~~~~~~~~i~~~~~g~-PLal~~~~~ 393 (951)
..+|++|.+ ..+..... .....+++.+++.++....+.+.+......- ..+.+..|++.++|. +.|+..+..
T Consensus 148 vv~Ilattn~~kl~~~L~-SR~~vv~f~~l~~~el~~~L~~i~~~egi~i--~~eal~~Ia~~s~GdlR~aln~Le~ 221 (472)
T PRK14962 148 VVFVLATTNLEKVPPTII-SRCQVIEFRNISDELIIKRLQEVAEAEGIEI--DREALSFIAKRASGGLRDALTMLEQ 221 (472)
T ss_pred EEEEEEeCChHhhhHHHh-cCcEEEEECCccHHHHHHHHHHHHHHcCCCC--CHHHHHHHHHHhCCCHHHHHHHHHH
Confidence 444444443 33332221 1226899999999999999888764322211 124567788877665 566655544
No 96
>PRK09087 hypothetical protein; Validated
Probab=98.25 E-value=1.8e-05 Score=80.50 Aligned_cols=138 Identities=11% Similarity=0.067 Sum_probs=83.0
Q ss_pred cEEEEEEecCCChhHHHHHHHHHHhhccccceeecccccchhcCCCChHHHHHHHHHHHhcCccccCCCCChHHHHHHhc
Q 002220 209 FRTIGIWGMGGIGKTTLAGAVFKLISREFEGKCFMPNVREESENGGGLVYLRDRVVSEIFQEDIKIGTPYLPDYIVERLN 288 (951)
Q Consensus 209 ~~vv~I~G~gGiGKTtLA~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~l~~~il~~l~~~~~~~~~~~~~~~l~~~l~ 288 (951)
.+.+.|||.+|+|||+|++.++.... ..|+... .+...+... +.
T Consensus 44 ~~~l~l~G~~GsGKThLl~~~~~~~~-----~~~i~~~-----------~~~~~~~~~--------------------~~ 87 (226)
T PRK09087 44 SPVVVLAGPVGSGKTHLASIWREKSD-----ALLIHPN-----------EIGSDAANA--------------------AA 87 (226)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHhcC-----CEEecHH-----------HcchHHHHh--------------------hh
Confidence 46789999999999999999887532 2244210 011111111 11
Q ss_pred CCcEEEEEeCCCCh----HHHHHHHhccCCCCCCCEEEEEeCC---------chhhhhcCCCccceEEcCCCChhhhHHH
Q 002220 289 RMKVLTVLDDVNKV----RQLHYLACVLDQFGPGSRIIITTRD---------KRILDDFGVCDTDIYEVNKLRFHEALVL 355 (951)
Q Consensus 289 ~~~~LlVlDdv~~~----~~~~~l~~~~~~~~~gs~IlvTtR~---------~~v~~~~~~~~~~~~~l~~L~~~~a~~L 355 (951)
+ -++++||+... +.+-.+..... ..|..||+|++. +++.+.+... .++++++++.++-.++
T Consensus 88 ~--~~l~iDDi~~~~~~~~~lf~l~n~~~--~~g~~ilits~~~p~~~~~~~~dL~SRl~~g--l~~~l~~pd~e~~~~i 161 (226)
T PRK09087 88 E--GPVLIEDIDAGGFDETGLFHLINSVR--QAGTSLLMTSRLWPSSWNVKLPDLKSRLKAA--TVVEIGEPDDALLSQV 161 (226)
T ss_pred c--CeEEEECCCCCCCCHHHHHHHHHHHH--hCCCeEEEECCCChHHhccccccHHHHHhCC--ceeecCCCCHHHHHHH
Confidence 1 27888999532 22222222222 346779998873 2334444333 7899999999999999
Q ss_pred HhhhhccCCCCChhHHHHHHHHHHHcCCCchHHHH
Q 002220 356 FSNFAFKENQCPGDLLALLERVLKYANGNPLALRV 390 (951)
Q Consensus 356 f~~~~~~~~~~~~~~~~~~~~i~~~~~g~PLal~~ 390 (951)
+.+++-..... --+++..-|++.+.|..-++..
T Consensus 162 L~~~~~~~~~~--l~~ev~~~La~~~~r~~~~l~~ 194 (226)
T PRK09087 162 IFKLFADRQLY--VDPHVVYYLVSRMERSLFAAQT 194 (226)
T ss_pred HHHHHHHcCCC--CCHHHHHHHHHHhhhhHHHHHH
Confidence 99887432211 1135667777777776655553
No 97
>cd00009 AAA The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold. The ASCE division also includes ABC, RecA-like, VirD4-like, PilT-like, and SF1/2 helicases. Members of the AAA+ ATPases function as molecular chaperons, ATPase subunits of proteases, helicases, or nucleic-acid stimulated ATPases. The AAA+ proteins contain several distinct features in addition to the conserved alpha-beta-alpha core domain structure and the Walker A and B motifs of the P-loop NTPases.
Probab=98.24 E-value=7.2e-06 Score=78.08 Aligned_cols=123 Identities=18% Similarity=0.216 Sum_probs=68.9
Q ss_pred ccchhhHHHHHHhhccCCCCcEEEEEEecCCChhHHHHHHHHHHhhccccceeecccccchhcCCCChHHHHHHHHHHHh
Q 002220 189 VGLNSRIQKIKSLLCIGLPDFRTIGIWGMGGIGKTTLAGAVFKLISREFEGKCFMPNVREESENGGGLVYLRDRVVSEIF 268 (951)
Q Consensus 189 vGr~~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~l~~~il~~l~ 268 (951)
+|++..+..+...+.. ...+.+.|+|.+|+|||++|+++++.....-..++++. ...... ........ ...
T Consensus 1 ~~~~~~~~~i~~~~~~--~~~~~v~i~G~~G~GKT~l~~~i~~~~~~~~~~v~~~~-~~~~~~----~~~~~~~~-~~~- 71 (151)
T cd00009 1 VGQEEAIEALREALEL--PPPKNLLLYGPPGTGKTTLARAIANELFRPGAPFLYLN-ASDLLE----GLVVAELF-GHF- 71 (151)
T ss_pred CchHHHHHHHHHHHhC--CCCCeEEEECCCCCCHHHHHHHHHHHhhcCCCCeEEEe-hhhhhh----hhHHHHHh-hhh-
Confidence 4788888899888753 23568899999999999999999987643333344443 111110 00000000 000
Q ss_pred cCccccCCCCChHHHHHHhcCCcEEEEEeCCCCh--HH---HHHHHhccCCC---CCCCEEEEEeCCch
Q 002220 269 QEDIKIGTPYLPDYIVERLNRMKVLTVLDDVNKV--RQ---LHYLACVLDQF---GPGSRIIITTRDKR 329 (951)
Q Consensus 269 ~~~~~~~~~~~~~~l~~~l~~~~~LlVlDdv~~~--~~---~~~l~~~~~~~---~~gs~IlvTtR~~~ 329 (951)
............++.++|+||++.. .. +.......... ..+.+||+||....
T Consensus 72 ---------~~~~~~~~~~~~~~~~lilDe~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~ii~~~~~~~ 131 (151)
T cd00009 72 ---------LVRLLFELAEKAKPGVLFIDEIDSLSRGAQNALLRVLETLNDLRIDRENVRVIGATNRPL 131 (151)
T ss_pred ---------hHhHHHHhhccCCCeEEEEeChhhhhHHHHHHHHHHHHhcCceeccCCCeEEEEecCccc
Confidence 0001112223456789999999853 22 22222222221 36778888887653
No 98
>PRK08903 DnaA regulatory inactivator Hda; Validated
Probab=98.24 E-value=1.6e-05 Score=81.88 Aligned_cols=173 Identities=17% Similarity=0.204 Sum_probs=94.5
Q ss_pred CCCcc-cchhhH-HHHHHhhccCCCCcEEEEEEecCCChhHHHHHHHHHHhhccccceeecccccchhcCCCChHHHHHH
Q 002220 185 SDGFV-GLNSRI-QKIKSLLCIGLPDFRTIGIWGMGGIGKTTLAGAVFKLISREFEGKCFMPNVREESENGGGLVYLRDR 262 (951)
Q Consensus 185 ~~~~v-Gr~~~~-~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~l~~~ 262 (951)
.++|+ |..... ..+.++.. .....+.+.|+|.+|+|||+||+.+++.....-....++.... ....
T Consensus 17 ~d~f~~~~~~~~~~~l~~~~~-~~~~~~~~~l~G~~G~GKT~La~ai~~~~~~~~~~~~~i~~~~-----------~~~~ 84 (227)
T PRK08903 17 FDNFVAGENAELVARLRELAA-GPVADRFFYLWGEAGSGRSHLLQALVADASYGGRNARYLDAAS-----------PLLA 84 (227)
T ss_pred hcccccCCcHHHHHHHHHHHh-ccCCCCeEEEECCCCCCHHHHHHHHHHHHHhCCCcEEEEehHH-----------hHHH
Confidence 34555 554443 44444443 2234567899999999999999999986533322334443110 0000
Q ss_pred HHHHHhcCccccCCCCChHHHHHHhcCCcEEEEEeCCCCh--HHHHHHHhccCCC-CCCC-EEEEEeCCchhhh------
Q 002220 263 VVSEIFQEDIKIGTPYLPDYIVERLNRMKVLTVLDDVNKV--RQLHYLACVLDQF-GPGS-RIIITTRDKRILD------ 332 (951)
Q Consensus 263 il~~l~~~~~~~~~~~~~~~l~~~l~~~~~LlVlDdv~~~--~~~~~l~~~~~~~-~~gs-~IlvTtR~~~v~~------ 332 (951)
. .. ....-++|+||++.. ...+.+...+... ..+. .||+|++......
T Consensus 85 ----~-----------------~~-~~~~~~liiDdi~~l~~~~~~~L~~~~~~~~~~~~~~vl~~~~~~~~~~~l~~~L 142 (227)
T PRK08903 85 ----F-----------------DF-DPEAELYAVDDVERLDDAQQIALFNLFNRVRAHGQGALLVAGPAAPLALPLREDL 142 (227)
T ss_pred ----H-----------------hh-cccCCEEEEeChhhcCchHHHHHHHHHHHHHHcCCcEEEEeCCCCHHhCCCCHHH
Confidence 0 00 112347889999643 2223333332211 2343 3666666432111
Q ss_pred --hcCCCccceEEcCCCChhhhHHHHhhhhccCCCCChhHHHHHHHHHHHcCCCchHHHHHhhhc
Q 002220 333 --DFGVCDTDIYEVNKLRFHEALVLFSNFAFKENQCPGDLLALLERVLKYANGNPLALRVLGSFF 395 (951)
Q Consensus 333 --~~~~~~~~~~~l~~L~~~~a~~Lf~~~~~~~~~~~~~~~~~~~~i~~~~~g~PLal~~~~~~L 395 (951)
.+... ..++++++++++-..++.+.+-...... -+++.+.+++...|++..+..+...+
T Consensus 143 ~sr~~~~--~~i~l~pl~~~~~~~~l~~~~~~~~v~l--~~~al~~L~~~~~gn~~~l~~~l~~l 203 (227)
T PRK08903 143 RTRLGWG--LVYELKPLSDADKIAALKAAAAERGLQL--ADEVPDYLLTHFRRDMPSLMALLDAL 203 (227)
T ss_pred HHHHhcC--eEEEecCCCHHHHHHHHHHHHHHcCCCC--CHHHHHHHHHhccCCHHHHHHHHHHH
Confidence 22111 6899999999887777766442211111 12566777888888888877665543
No 99
>PRK07994 DNA polymerase III subunits gamma and tau; Validated
Probab=98.22 E-value=2.2e-05 Score=90.76 Aligned_cols=182 Identities=14% Similarity=0.098 Sum_probs=108.2
Q ss_pred CCCCCCcccchhhHHHHHHhhccCCCCcEEEEEEecCCChhHHHHHHHHHHhhcccc---------------------ce
Q 002220 182 STYSDGFVGLNSRIQKIKSLLCIGLPDFRTIGIWGMGGIGKTTLAGAVFKLISREFE---------------------GK 240 (951)
Q Consensus 182 ~~~~~~~vGr~~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~~~~~~~~~f~---------------------~~ 240 (951)
|....++||-+.-++.|...+..+. -...+.++|..|+||||+|+.+++.+-.... ..
T Consensus 12 P~~f~divGQe~vv~~L~~~l~~~r-l~hAyLf~Gp~GvGKTTlAr~lAk~L~c~~~~~~~pCg~C~~C~~i~~g~~~D~ 90 (647)
T PRK07994 12 PQTFAEVVGQEHVLTALANALDLGR-LHHAYLFSGTRGVGKTTIARLLAKGLNCETGITATPCGECDNCREIEQGRFVDL 90 (647)
T ss_pred CCCHHHhcCcHHHHHHHHHHHHcCC-CCeEEEEECCCCCCHHHHHHHHHHhhhhccCCCCCCCCCCHHHHHHHcCCCCCc
Confidence 3455789999999999999886432 2456789999999999999999986533210 00
Q ss_pred eecccccchhcCCCChHHHHHHHHHHHhcCccccCCCCChHHHHHHhcCCcEEEEEeCCCCh--HHHHHHHhccCCCCCC
Q 002220 241 CFMPNVREESENGGGLVYLRDRVVSEIFQEDIKIGTPYLPDYIVERLNRMKVLTVLDDVNKV--RQLHYLACVLDQFGPG 318 (951)
Q Consensus 241 ~~~~~~~~~~~~~~~~~~l~~~il~~l~~~~~~~~~~~~~~~l~~~l~~~~~LlVlDdv~~~--~~~~~l~~~~~~~~~g 318 (951)
+.+.. .+ ..++..+ +.+...+. ..-..+++-++|+|+++.. ...+.++..+......
T Consensus 91 ieida---as--~~~Vddi-R~li~~~~---------------~~p~~g~~KV~IIDEah~Ls~~a~NALLKtLEEPp~~ 149 (647)
T PRK07994 91 IEIDA---AS--RTKVEDT-RELLDNVQ---------------YAPARGRFKVYLIDEVHMLSRHSFNALLKTLEEPPEH 149 (647)
T ss_pred eeecc---cc--cCCHHHH-HHHHHHHH---------------hhhhcCCCEEEEEechHhCCHHHHHHHHHHHHcCCCC
Confidence 11100 00 0111111 11111110 0012356679999999744 4567776666554556
Q ss_pred CEEEEEeCCc-hhhhhcCCCccceEEcCCCChhhhHHHHhhhhccCCCCChhHHHHHHHHHHHcCCCchHH
Q 002220 319 SRIIITTRDK-RILDDFGVCDTDIYEVNKLRFHEALVLFSNFAFKENQCPGDLLALLERVLKYANGNPLAL 388 (951)
Q Consensus 319 s~IlvTtR~~-~v~~~~~~~~~~~~~l~~L~~~~a~~Lf~~~~~~~~~~~~~~~~~~~~i~~~~~g~PLal 388 (951)
.++|++|.+. .+...... ....|.+++++.++..+.+.+.+-...... ..+....|++.++|.+--+
T Consensus 150 v~FIL~Tt~~~kLl~TI~S-RC~~~~f~~Ls~~ei~~~L~~il~~e~i~~--e~~aL~~Ia~~s~Gs~R~A 217 (647)
T PRK07994 150 VKFLLATTDPQKLPVTILS-RCLQFHLKALDVEQIRQQLEHILQAEQIPF--EPRALQLLARAADGSMRDA 217 (647)
T ss_pred eEEEEecCCccccchHHHh-hheEeeCCCCCHHHHHHHHHHHHHHcCCCC--CHHHHHHHHHHcCCCHHHH
Confidence 6666555544 44322110 127899999999999999887653222111 2245678899999987543
No 100
>PRK14964 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.22 E-value=2.9e-05 Score=86.98 Aligned_cols=181 Identities=14% Similarity=0.175 Sum_probs=109.1
Q ss_pred CCCCCCcccchhhHHHHHHhhccCCCCcEEEEEEecCCChhHHHHHHHHHHhhcc---------------------ccce
Q 002220 182 STYSDGFVGLNSRIQKIKSLLCIGLPDFRTIGIWGMGGIGKTTLAGAVFKLISRE---------------------FEGK 240 (951)
Q Consensus 182 ~~~~~~~vGr~~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~~~~~~~~~---------------------f~~~ 240 (951)
|...+++||.+..++.|...+..+. -.+.+.++|+.|+||||+|+.++..+-.. +..+
T Consensus 9 P~~f~dliGQe~vv~~L~~a~~~~r-i~ha~Lf~Gp~G~GKTT~ArilAk~LnC~~~~~~~pCg~C~~C~~i~~~~~~Dv 87 (491)
T PRK14964 9 PSSFKDLVGQDVLVRILRNAFTLNK-IPQSILLVGASGVGKTTCARIISLCLNCSNGPTSDPCGTCHNCISIKNSNHPDV 87 (491)
T ss_pred CCCHHHhcCcHHHHHHHHHHHHcCC-CCceEEEECCCCccHHHHHHHHHHHHcCcCCCCCCCccccHHHHHHhccCCCCE
Confidence 3445789999999999988885432 24578899999999999999998754211 1111
Q ss_pred eecccccchhcCCCChHHHHHHHHHHHhcCccccCCCCChHHHHHHhcCCcEEEEEeCCCCh--HHHHHHHhccCCCCCC
Q 002220 241 CFMPNVREESENGGGLVYLRDRVVSEIFQEDIKIGTPYLPDYIVERLNRMKVLTVLDDVNKV--RQLHYLACVLDQFGPG 318 (951)
Q Consensus 241 ~~~~~~~~~~~~~~~~~~l~~~il~~l~~~~~~~~~~~~~~~l~~~l~~~~~LlVlDdv~~~--~~~~~l~~~~~~~~~g 318 (951)
+.+... . ..++..+. .++...... -..++.-++|+|+++.. ...+.+...+....+.
T Consensus 88 ~eidaa----s-~~~vddIR-~Iie~~~~~---------------P~~~~~KVvIIDEah~Ls~~A~NaLLK~LEePp~~ 146 (491)
T PRK14964 88 IEIDAA----S-NTSVDDIK-VILENSCYL---------------PISSKFKVYIIDEVHMLSNSAFNALLKTLEEPAPH 146 (491)
T ss_pred EEEecc----c-CCCHHHHH-HHHHHHHhc---------------cccCCceEEEEeChHhCCHHHHHHHHHHHhCCCCC
Confidence 111100 0 11222221 121111000 01245668999999644 4466677666655667
Q ss_pred CEEEEEeCC-chhhhhcCCCccceEEcCCCChhhhHHHHhhhhccCCCCChhHHHHHHHHHHHcCCCchH
Q 002220 319 SRIIITTRD-KRILDDFGVCDTDIYEVNKLRFHEALVLFSNFAFKENQCPGDLLALLERVLKYANGNPLA 387 (951)
Q Consensus 319 s~IlvTtR~-~~v~~~~~~~~~~~~~l~~L~~~~a~~Lf~~~~~~~~~~~~~~~~~~~~i~~~~~g~PLa 387 (951)
+++|++|.+ ..+..... .....+++.+++.++..+.+.+.+......- ..+.++.|++.++|.+-.
T Consensus 147 v~fIlatte~~Kl~~tI~-SRc~~~~f~~l~~~el~~~L~~ia~~Egi~i--~~eAL~lIa~~s~GslR~ 213 (491)
T PRK14964 147 VKFILATTEVKKIPVTII-SRCQRFDLQKIPTDKLVEHLVDIAKKENIEH--DEESLKLIAENSSGSMRN 213 (491)
T ss_pred eEEEEEeCChHHHHHHHH-HhheeeecccccHHHHHHHHHHHHHHcCCCC--CHHHHHHHHHHcCCCHHH
Confidence 767666543 34332221 1127899999999999999988775433211 124567888899887753
No 101
>PRK05642 DNA replication initiation factor; Validated
Probab=98.22 E-value=2.7e-05 Score=79.93 Aligned_cols=150 Identities=18% Similarity=0.257 Sum_probs=87.9
Q ss_pred cEEEEEEecCCChhHHHHHHHHHHhhccccceeecccccchhcCCCChHHHHHHHHHHHhcCccccCCCCChHHHHHHhc
Q 002220 209 FRTIGIWGMGGIGKTTLAGAVFKLISREFEGKCFMPNVREESENGGGLVYLRDRVVSEIFQEDIKIGTPYLPDYIVERLN 288 (951)
Q Consensus 209 ~~vv~I~G~gGiGKTtLA~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~l~~~il~~l~~~~~~~~~~~~~~~l~~~l~ 288 (951)
...+.|+|..|+|||.||+++++.+..+-..++|+.. . .+... ...+.+.++
T Consensus 45 ~~~l~l~G~~G~GKTHLl~a~~~~~~~~~~~v~y~~~-~----------~~~~~-----------------~~~~~~~~~ 96 (234)
T PRK05642 45 ESLIYLWGKDGVGRSHLLQAACLRFEQRGEPAVYLPL-A----------ELLDR-----------------GPELLDNLE 96 (234)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHHHhCCCcEEEeeH-H----------HHHhh-----------------hHHHHHhhh
Confidence 3678999999999999999999876554445666641 1 11110 012333333
Q ss_pred CCcEEEEEeCCCCh---HHHHH-HHhccCC-CCCCCEEEEEeCCch---------hhhhcCCCccceEEcCCCChhhhHH
Q 002220 289 RMKVLTVLDDVNKV---RQLHY-LACVLDQ-FGPGSRIIITTRDKR---------ILDDFGVCDTDIYEVNKLRFHEALV 354 (951)
Q Consensus 289 ~~~~LlVlDdv~~~---~~~~~-l~~~~~~-~~~gs~IlvTtR~~~---------v~~~~~~~~~~~~~l~~L~~~~a~~ 354 (951)
+-. ++|+||+... ..|+. +...+.. ...|..||+|++... +.+.++.. .++++++++.++-.+
T Consensus 97 ~~d-~LiiDDi~~~~~~~~~~~~Lf~l~n~~~~~g~~ilits~~~p~~l~~~~~~L~SRl~~g--l~~~l~~~~~e~~~~ 173 (234)
T PRK05642 97 QYE-LVCLDDLDVIAGKADWEEALFHLFNRLRDSGRRLLLAASKSPRELPIKLPDLKSRLTLA--LVFQMRGLSDEDKLR 173 (234)
T ss_pred hCC-EEEEechhhhcCChHHHHHHHHHHHHHHhcCCEEEEeCCCCHHHcCccCccHHHHHhcC--eeeecCCCCHHHHHH
Confidence 333 6788999522 23332 3322221 134677888887542 12222222 578999999999999
Q ss_pred HHhhhhccCCCCChhHHHHHHHHHHHcCCCchHHHHH
Q 002220 355 LFSNFAFKENQCPGDLLALLERVLKYANGNPLALRVL 391 (951)
Q Consensus 355 Lf~~~~~~~~~~~~~~~~~~~~i~~~~~g~PLal~~~ 391 (951)
.+.+++.......+ +++..-+++.+.|..-++..+
T Consensus 174 il~~ka~~~~~~l~--~ev~~~L~~~~~~d~r~l~~~ 208 (234)
T PRK05642 174 ALQLRASRRGLHLT--DEVGHFILTRGTRSMSALFDL 208 (234)
T ss_pred HHHHHHHHcCCCCC--HHHHHHHHHhcCCCHHHHHHH
Confidence 99866643221111 356677777777765544433
No 102
>PF00308 Bac_DnaA: Bacterial dnaA protein; InterPro: IPR013317 This entry represents the central domain of bacterial DnaA proteins [, , ] that play an important role in initiating and regulating chromosomal replication. DnaA is an ATP- and DNA-binding protein. It binds specifically to 9 bp nucleotide repeats known as dnaA boxes which are found in the chromosome origin of replication (oriC). DnaA is a protein of about 50 kDa that contains two conserved regions: the first is located in the N-terminal half and corresponds to the ATP-binding domain, the second is located in the C-terminal half and could be involved in DNA-binding. The protein may also bind the RNA polymerase beta subunit, the dnaB and dnaZ proteins, and the groE gene products (chaperonins) [].; PDB: 2KJQ_A 2Z4S_A 2Z4R_C 2HCB_B 3R8F_C 1L8Q_A 3SC3_B 3BOS_A.
Probab=98.21 E-value=2.8e-05 Score=78.79 Aligned_cols=158 Identities=13% Similarity=0.167 Sum_probs=87.8
Q ss_pred CcEEEEEEecCCChhHHHHHHHHHHhhcccc--ceeecccccchhcCCCChHHHHHHHHHHHhcCccccCCCCChHHHHH
Q 002220 208 DFRTIGIWGMGGIGKTTLAGAVFKLISREFE--GKCFMPNVREESENGGGLVYLRDRVVSEIFQEDIKIGTPYLPDYIVE 285 (951)
Q Consensus 208 ~~~vv~I~G~gGiGKTtLA~~~~~~~~~~f~--~~~~~~~~~~~~~~~~~~~~l~~~il~~l~~~~~~~~~~~~~~~l~~ 285 (951)
....+.|+|..|+|||.|.+++++.+....+ .++|+. .......+...+.. .....+++
T Consensus 33 ~~~~l~l~G~~G~GKTHLL~Ai~~~~~~~~~~~~v~y~~-----------~~~f~~~~~~~~~~--------~~~~~~~~ 93 (219)
T PF00308_consen 33 RYNPLFLYGPSGLGKTHLLQAIANEAQKQHPGKRVVYLS-----------AEEFIREFADALRD--------GEIEEFKD 93 (219)
T ss_dssp SSSEEEEEESTTSSHHHHHHHHHHHHHHHCTTS-EEEEE-----------HHHHHHHHHHHHHT--------TSHHHHHH
T ss_pred CCCceEEECCCCCCHHHHHHHHHHHHHhccccccceeec-----------HHHHHHHHHHHHHc--------ccchhhhh
Confidence 3456889999999999999999998765543 244543 12233334433322 11245556
Q ss_pred HhcCCcEEEEEeCCCChH---HHHH-HHhccCC-CCCCCEEEEEeCCc-h--------hhhhcCCCccceEEcCCCChhh
Q 002220 286 RLNRMKVLTVLDDVNKVR---QLHY-LACVLDQ-FGPGSRIIITTRDK-R--------ILDDFGVCDTDIYEVNKLRFHE 351 (951)
Q Consensus 286 ~l~~~~~LlVlDdv~~~~---~~~~-l~~~~~~-~~~gs~IlvTtR~~-~--------v~~~~~~~~~~~~~l~~L~~~~ 351 (951)
.+++ -=+|++||++... .|+. +...+.. ...|.+||+|++.. . +.+.+... -++++++++.++
T Consensus 94 ~~~~-~DlL~iDDi~~l~~~~~~q~~lf~l~n~~~~~~k~li~ts~~~P~~l~~~~~~L~SRl~~G--l~~~l~~pd~~~ 170 (219)
T PF00308_consen 94 RLRS-ADLLIIDDIQFLAGKQRTQEELFHLFNRLIESGKQLILTSDRPPSELSGLLPDLRSRLSWG--LVVELQPPDDED 170 (219)
T ss_dssp HHCT-SSEEEEETGGGGTTHHHHHHHHHHHHHHHHHTTSEEEEEESS-TTTTTTS-HHHHHHHHCS--EEEEE----HHH
T ss_pred hhhc-CCEEEEecchhhcCchHHHHHHHHHHHHHHhhCCeEEEEeCCCCccccccChhhhhhHhhc--chhhcCCCCHHH
Confidence 6653 4477899996432 2222 2222111 13567899999644 1 22223232 679999999999
Q ss_pred hHHHHhhhhccCCCCChhHHHHHHHHHHHcCCCchHHH
Q 002220 352 ALVLFSNFAFKENQCPGDLLALLERVLKYANGNPLALR 389 (951)
Q Consensus 352 a~~Lf~~~~~~~~~~~~~~~~~~~~i~~~~~g~PLal~ 389 (951)
..+++.+.+-..... --+++++-+++.+.+..-.+.
T Consensus 171 r~~il~~~a~~~~~~--l~~~v~~~l~~~~~~~~r~L~ 206 (219)
T PF00308_consen 171 RRRILQKKAKERGIE--LPEEVIEYLARRFRRDVRELE 206 (219)
T ss_dssp HHHHHHHHHHHTT----S-HHHHHHHHHHTTSSHHHHH
T ss_pred HHHHHHHHHHHhCCC--CcHHHHHHHHHhhcCCHHHHH
Confidence 999999888533221 122455666666655444433
No 103
>TIGR02397 dnaX_nterm DNA polymerase III, subunit gamma and tau. This model represents the well-conserved first ~ 365 amino acids of the translation of the dnaX gene. The full-length product of the dnaX gene in the model bacterium E. coli is the DNA polymerase III tau subunit. A translational frameshift leads to early termination and a truncated protein subunit gamma, about 1/3 shorter than tau and present in roughly equal amounts. This frameshift mechanism is not necessarily universal for species with DNA polymerase III but appears conserved in the exterme thermophile Thermus thermophilis.
Probab=98.21 E-value=4.5e-05 Score=84.66 Aligned_cols=186 Identities=15% Similarity=0.123 Sum_probs=110.3
Q ss_pred CCCCCCcccchhhHHHHHHhhccCCCCcEEEEEEecCCChhHHHHHHHHHHhhcc----ccc-----------------e
Q 002220 182 STYSDGFVGLNSRIQKIKSLLCIGLPDFRTIGIWGMGGIGKTTLAGAVFKLISRE----FEG-----------------K 240 (951)
Q Consensus 182 ~~~~~~~vGr~~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~~~~~~~~~----f~~-----------------~ 240 (951)
|..-+.++|.+..++.+.+.+..+ .-.+.+.++|++|+||||+|+.++..+... +.. .
T Consensus 10 p~~~~~iig~~~~~~~l~~~~~~~-~~~~~~Ll~G~~G~GKt~~a~~la~~l~~~~~~~~~~c~~c~~c~~~~~~~~~~~ 88 (355)
T TIGR02397 10 PQTFEDVIGQEHIVQTLKNAIKNG-RIAHAYLFSGPRGTGKTSIARIFAKALNCQNGPDGEPCNECESCKEINSGSSLDV 88 (355)
T ss_pred CCcHhhccCcHHHHHHHHHHHHcC-CCCeEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCCCCHHHHHHhcCCCCCE
Confidence 344567899999999999988543 234678899999999999999999865322 110 0
Q ss_pred eecccccchhcCCCChHHHHHHHHHHHhcCccccCCCCChHHHHHHhcCCcEEEEEeCCCCh--HHHHHHHhccCCCCCC
Q 002220 241 CFMPNVREESENGGGLVYLRDRVVSEIFQEDIKIGTPYLPDYIVERLNRMKVLTVLDDVNKV--RQLHYLACVLDQFGPG 318 (951)
Q Consensus 241 ~~~~~~~~~~~~~~~~~~l~~~il~~l~~~~~~~~~~~~~~~l~~~l~~~~~LlVlDdv~~~--~~~~~l~~~~~~~~~g 318 (951)
.++... . ..... ..+.+...+... -..+++-++|+|+++.. .....+...+....+.
T Consensus 89 ~~~~~~----~-~~~~~-~~~~l~~~~~~~---------------p~~~~~~vviidea~~l~~~~~~~Ll~~le~~~~~ 147 (355)
T TIGR02397 89 IEIDAA----S-NNGVD-DIREILDNVKYA---------------PSSGKYKVYIIDEVHMLSKSAFNALLKTLEEPPEH 147 (355)
T ss_pred EEeecc----c-cCCHH-HHHHHHHHHhcC---------------cccCCceEEEEeChhhcCHHHHHHHHHHHhCCccc
Confidence 111000 0 00111 111122211100 01234558899998654 4466666666544556
Q ss_pred CEEEEEeCCch-hhhhcCCCccceEEcCCCChhhhHHHHhhhhccCCCCChhHHHHHHHHHHHcCCCchHHHHHh
Q 002220 319 SRIIITTRDKR-ILDDFGVCDTDIYEVNKLRFHEALVLFSNFAFKENQCPGDLLALLERVLKYANGNPLALRVLG 392 (951)
Q Consensus 319 s~IlvTtR~~~-v~~~~~~~~~~~~~l~~L~~~~a~~Lf~~~~~~~~~~~~~~~~~~~~i~~~~~g~PLal~~~~ 392 (951)
+.+|++|.+.. +.....- ....+++.+++.++..+++...+-......+ .+.+..+++.++|.|..+....
T Consensus 148 ~~lIl~~~~~~~l~~~l~s-r~~~~~~~~~~~~~l~~~l~~~~~~~g~~i~--~~a~~~l~~~~~g~~~~a~~~l 219 (355)
T TIGR02397 148 VVFILATTEPHKIPATILS-RCQRFDFKRIPLEDIVERLKKILDKEGIKIE--DEALELIARAADGSLRDALSLL 219 (355)
T ss_pred eeEEEEeCCHHHHHHHHHh-heeEEEcCCCCHHHHHHHHHHHHHHcCCCCC--HHHHHHHHHHcCCChHHHHHHH
Confidence 67677765543 2222110 1167899999999999999876643222111 2567788999999886654443
No 104
>PRK13341 recombination factor protein RarA/unknown domain fusion protein; Reviewed
Probab=98.20 E-value=2.1e-05 Score=92.89 Aligned_cols=171 Identities=18% Similarity=0.234 Sum_probs=97.9
Q ss_pred CCCCCcccchhhHH---HHHHhhccCCCCcEEEEEEecCCChhHHHHHHHHHHhhccccceeecccccchhcCCCChHHH
Q 002220 183 TYSDGFVGLNSRIQ---KIKSLLCIGLPDFRTIGIWGMGGIGKTTLAGAVFKLISREFEGKCFMPNVREESENGGGLVYL 259 (951)
Q Consensus 183 ~~~~~~vGr~~~~~---~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~l 259 (951)
...++|+|.+..+. .+.+.+.. +....+.++|++|+||||+|+.+++.....|. .+..+ ..++..+
T Consensus 25 ~tldd~vGQe~ii~~~~~L~~~i~~--~~~~slLL~GPpGtGKTTLA~aIA~~~~~~f~---~lna~------~~~i~di 93 (725)
T PRK13341 25 RTLEEFVGQDHILGEGRLLRRAIKA--DRVGSLILYGPPGVGKTTLARIIANHTRAHFS---SLNAV------LAGVKDL 93 (725)
T ss_pred CcHHHhcCcHHHhhhhHHHHHHHhc--CCCceEEEECCCCCCHHHHHHHHHHHhcCcce---eehhh------hhhhHHH
Confidence 34467899998774 46666643 34556789999999999999999987765542 11110 1111111
Q ss_pred HHHHHHHHhcCccccCCCCChHHHHHHh--cCCcEEEEEeCCC--ChHHHHHHHhccCCCCCCCEEEEE--eCCch--hh
Q 002220 260 RDRVVSEIFQEDIKIGTPYLPDYIVERL--NRMKVLTVLDDVN--KVRQLHYLACVLDQFGPGSRIIIT--TRDKR--IL 331 (951)
Q Consensus 260 ~~~il~~l~~~~~~~~~~~~~~~l~~~l--~~~~~LlVlDdv~--~~~~~~~l~~~~~~~~~gs~IlvT--tR~~~--v~ 331 (951)
+..+.. ..+.+ .+++.++||||++ +..+.+.+.... ..|..++|+ |.+.. +.
T Consensus 94 -r~~i~~----------------a~~~l~~~~~~~IL~IDEIh~Ln~~qQdaLL~~l---E~g~IiLI~aTTenp~~~l~ 153 (725)
T PRK13341 94 -RAEVDR----------------AKERLERHGKRTILFIDEVHRFNKAQQDALLPWV---ENGTITLIGATTENPYFEVN 153 (725)
T ss_pred -HHHHHH----------------HHHHhhhcCCceEEEEeChhhCCHHHHHHHHHHh---cCceEEEEEecCCChHhhhh
Confidence 111111 11111 2456799999996 444555565443 235555553 33331 11
Q ss_pred hhcCCCccceEEcCCCChhhhHHHHhhhhccC-----CCCChhHHHHHHHHHHHcCCCc
Q 002220 332 DDFGVCDTDIYEVNKLRFHEALVLFSNFAFKE-----NQCPGDLLALLERVLKYANGNP 385 (951)
Q Consensus 332 ~~~~~~~~~~~~l~~L~~~~a~~Lf~~~~~~~-----~~~~~~~~~~~~~i~~~~~g~P 385 (951)
.... .....+.+++|+.++...++.+.+-.. .....-..+..+.|++.+.|..
T Consensus 154 ~aL~-SR~~v~~l~pLs~edi~~IL~~~l~~~~~~~g~~~v~I~deaL~~La~~s~GD~ 211 (725)
T PRK13341 154 KALV-SRSRLFRLKSLSDEDLHQLLKRALQDKERGYGDRKVDLEPEAEKHLVDVANGDA 211 (725)
T ss_pred hHhh-ccccceecCCCCHHHHHHHHHHHHHHHHhhcCCcccCCCHHHHHHHHHhCCCCH
Confidence 1110 012679999999999999998765310 1111112355677888888864
No 105
>PRK08084 DNA replication initiation factor; Provisional
Probab=98.20 E-value=3e-05 Score=79.73 Aligned_cols=170 Identities=16% Similarity=0.211 Sum_probs=93.9
Q ss_pred CCcc-cchh-hHHHHHHhhccCCCCcEEEEEEecCCChhHHHHHHHHHHhhccccceeecccccchhcCCCChHHHHHHH
Q 002220 186 DGFV-GLNS-RIQKIKSLLCIGLPDFRTIGIWGMGGIGKTTLAGAVFKLISREFEGKCFMPNVREESENGGGLVYLRDRV 263 (951)
Q Consensus 186 ~~~v-Gr~~-~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~l~~~i 263 (951)
++|+ |-.. .+..+..+.. ..+.+.+.|+|++|+|||+||+.+++.....-..+.|+.. .... ...
T Consensus 22 d~f~~~~n~~a~~~l~~~~~--~~~~~~l~l~Gp~G~GKThLl~a~~~~~~~~~~~v~y~~~-~~~~-------~~~--- 88 (235)
T PRK08084 22 ASFYPGDNDSLLAALQNALR--QEHSGYIYLWSREGAGRSHLLHAACAELSQRGRAVGYVPL-DKRA-------WFV--- 88 (235)
T ss_pred cccccCccHHHHHHHHHHHh--CCCCCeEEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEEH-HHHh-------hhh---
Confidence 3444 6322 3344444432 2234678999999999999999999876554344455431 1000 000
Q ss_pred HHHHhcCccccCCCCChHHHHHHhcCCcEEEEEeCCCCh---HHHHH-HHhccCCC-CCC-CEEEEEeCCc---------
Q 002220 264 VSEIFQEDIKIGTPYLPDYIVERLNRMKVLTVLDDVNKV---RQLHY-LACVLDQF-GPG-SRIIITTRDK--------- 328 (951)
Q Consensus 264 l~~l~~~~~~~~~~~~~~~l~~~l~~~~~LlVlDdv~~~---~~~~~-l~~~~~~~-~~g-s~IlvTtR~~--------- 328 (951)
..+.+.+.+ --++++||+... .+|+. +...+... ..| .++|+||+..
T Consensus 89 -----------------~~~~~~~~~-~dlliiDdi~~~~~~~~~~~~lf~l~n~~~e~g~~~li~ts~~~p~~l~~~~~ 150 (235)
T PRK08084 89 -----------------PEVLEGMEQ-LSLVCIDNIECIAGDELWEMAIFDLYNRILESGRTRLLITGDRPPRQLNLGLP 150 (235)
T ss_pred -----------------HHHHHHhhh-CCEEEEeChhhhcCCHHHHHHHHHHHHHHHHcCCCeEEEeCCCChHHcCcccH
Confidence 011111111 237899999543 22332 21111111 123 4789998855
Q ss_pred hhhhhcCCCccceEEcCCCChhhhHHHHhhhhccCCCCChhHHHHHHHHHHHcCCCchHHHH
Q 002220 329 RILDDFGVCDTDIYEVNKLRFHEALVLFSNFAFKENQCPGDLLALLERVLKYANGNPLALRV 390 (951)
Q Consensus 329 ~v~~~~~~~~~~~~~l~~L~~~~a~~Lf~~~~~~~~~~~~~~~~~~~~i~~~~~g~PLal~~ 390 (951)
++.+.+... .+++++++++++-.+++.+++...... --+++..-|++.+.|..-++..
T Consensus 151 ~L~SRl~~g--~~~~l~~~~~~~~~~~l~~~a~~~~~~--l~~~v~~~L~~~~~~d~r~l~~ 208 (235)
T PRK08084 151 DLASRLDWG--QIYKLQPLSDEEKLQALQLRARLRGFE--LPEDVGRFLLKRLDREMRTLFM 208 (235)
T ss_pred HHHHHHhCC--ceeeecCCCHHHHHHHHHHHHHHcCCC--CCHHHHHHHHHhhcCCHHHHHH
Confidence 233344333 689999999999999998766432111 1125667777777776554443
No 106
>PRK05896 DNA polymerase III subunits gamma and tau; Validated
Probab=98.19 E-value=1.9e-05 Score=89.74 Aligned_cols=191 Identities=15% Similarity=0.056 Sum_probs=104.2
Q ss_pred CCCCCCcccchhhHHHHHHhhccCCCCcEEEEEEecCCChhHHHHHHHHHHhhccccceeecccccchhcCCCChHHHHH
Q 002220 182 STYSDGFVGLNSRIQKIKSLLCIGLPDFRTIGIWGMGGIGKTTLAGAVFKLISREFEGKCFMPNVREESENGGGLVYLRD 261 (951)
Q Consensus 182 ~~~~~~~vGr~~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~l~~ 261 (951)
|....+++|.+..++.+.+.+..+ .-.+.+.++|+.|+||||+|+.+++.+...- |.. .. ..+--...+
T Consensus 12 P~~F~dIIGQe~iv~~L~~aI~~~-rl~hA~Lf~GP~GvGKTTlA~~lAk~L~C~~----~~~-~~-----~Cg~C~sCr 80 (605)
T PRK05896 12 PHNFKQIIGQELIKKILVNAILNN-KLTHAYIFSGPRGIGKTSIAKIFAKAINCLN----PKD-GD-----CCNSCSVCE 80 (605)
T ss_pred CCCHHHhcCcHHHHHHHHHHHHcC-CCCceEEEECCCCCCHHHHHHHHHHHhcCCC----CCC-CC-----CCcccHHHH
Confidence 445578999999999999988543 2346788999999999999999998653211 110 00 000000011
Q ss_pred HHHHHHhcCccccCC-CCCh-HHHHHH--------hcCCcEEEEEeCCCC--hHHHHHHHhccCCCCCCCEEEEEe-CCc
Q 002220 262 RVVSEIFQEDIKIGT-PYLP-DYIVER--------LNRMKVLTVLDDVNK--VRQLHYLACVLDQFGPGSRIIITT-RDK 328 (951)
Q Consensus 262 ~il~~l~~~~~~~~~-~~~~-~~l~~~--------l~~~~~LlVlDdv~~--~~~~~~l~~~~~~~~~gs~IlvTt-R~~ 328 (951)
.+.......-..... .... +.+++. ..+++-++|+|+++. ......+...+......+.+|++| ...
T Consensus 81 ~i~~~~h~DiieIdaas~igVd~IReIi~~~~~~P~~~~~KVIIIDEad~Lt~~A~NaLLKtLEEPp~~tvfIL~Tt~~~ 160 (605)
T PRK05896 81 SINTNQSVDIVELDAASNNGVDEIRNIIDNINYLPTTFKYKVYIIDEAHMLSTSAWNALLKTLEEPPKHVVFIFATTEFQ 160 (605)
T ss_pred HHHcCCCCceEEeccccccCHHHHHHHHHHHHhchhhCCcEEEEEechHhCCHHHHHHHHHHHHhCCCcEEEEEECCChH
Confidence 110000000000000 0000 122211 112344699999965 344666666555444455555555 333
Q ss_pred hhhhhcCCCccceEEcCCCChhhhHHHHhhhhccCCCCChhHHHHHHHHHHHcCCCch
Q 002220 329 RILDDFGVCDTDIYEVNKLRFHEALVLFSNFAFKENQCPGDLLALLERVLKYANGNPL 386 (951)
Q Consensus 329 ~v~~~~~~~~~~~~~l~~L~~~~a~~Lf~~~~~~~~~~~~~~~~~~~~i~~~~~g~PL 386 (951)
.+..... .....+++.+++.++....+...+-.....-+ .+.+..+++.++|.+-
T Consensus 161 KLl~TI~-SRcq~ieF~~Ls~~eL~~~L~~il~kegi~Is--~eal~~La~lS~GdlR 215 (605)
T PRK05896 161 KIPLTII-SRCQRYNFKKLNNSELQELLKSIAKKEKIKIE--DNAIDKIADLADGSLR 215 (605)
T ss_pred hhhHHHH-hhhhhcccCCCCHHHHHHHHHHHHHHcCCCCC--HHHHHHHHHHcCCcHH
Confidence 3322211 01268999999999999888876633221111 2456788889998664
No 107
>PRK14951 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.18 E-value=6.4e-05 Score=86.79 Aligned_cols=194 Identities=14% Similarity=0.122 Sum_probs=107.4
Q ss_pred CCCCCCcccchhhHHHHHHhhccCCCCcEEEEEEecCCChhHHHHHHHHHHhhcc----ccceeecccccchhcCCCChH
Q 002220 182 STYSDGFVGLNSRIQKIKSLLCIGLPDFRTIGIWGMGGIGKTTLAGAVFKLISRE----FEGKCFMPNVREESENGGGLV 257 (951)
Q Consensus 182 ~~~~~~~vGr~~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~~~~~~~~~----f~~~~~~~~~~~~~~~~~~~~ 257 (951)
|...+++||-+.-++.|.+++..+ .-...+.++|..|+||||+|+.+++.+-.. ......- ..+.-
T Consensus 12 P~~f~dviGQe~vv~~L~~~l~~~-rl~ha~Lf~Gp~GvGKTtlAr~lAk~LnC~~~~~~~~~~~~---------pCg~C 81 (618)
T PRK14951 12 PRSFSEMVGQEHVVQALTNALTQQ-RLHHAYLFTGTRGVGKTTVSRILAKSLNCQGPDGQGGITAT---------PCGVC 81 (618)
T ss_pred CCCHHHhcCcHHHHHHHHHHHHcC-CCCeEEEEECCCCCCHHHHHHHHHHHhcCCCcccccCCCCC---------CCCcc
Confidence 344578999999899999988643 234677899999999999999998754211 0000000 00000
Q ss_pred HHHHHHHHHHhcCccccCC-CCCh-HHHHHHh--------cCCcEEEEEeCCCCh--HHHHHHHhccCCCCCCCEEEEEe
Q 002220 258 YLRDRVVSEIFQEDIKIGT-PYLP-DYIVERL--------NRMKVLTVLDDVNKV--RQLHYLACVLDQFGPGSRIIITT 325 (951)
Q Consensus 258 ~l~~~il~~l~~~~~~~~~-~~~~-~~l~~~l--------~~~~~LlVlDdv~~~--~~~~~l~~~~~~~~~gs~IlvTt 325 (951)
...+.+...-...-..... .... +.+++.+ .++.-++|+|+|+.. ...+.++..+......+++|++|
T Consensus 82 ~~C~~i~~g~h~D~~eldaas~~~Vd~iReli~~~~~~p~~g~~KV~IIDEvh~Ls~~a~NaLLKtLEEPP~~~~fIL~T 161 (618)
T PRK14951 82 QACRDIDSGRFVDYTELDAASNRGVDEVQQLLEQAVYKPVQGRFKVFMIDEVHMLTNTAFNAMLKTLEEPPEYLKFVLAT 161 (618)
T ss_pred HHHHHHHcCCCCceeecCcccccCHHHHHHHHHHHHhCcccCCceEEEEEChhhCCHHHHHHHHHhcccCCCCeEEEEEE
Confidence 0001110000000000000 0001 2222222 234558899999744 44666776665545566666555
Q ss_pred CC-chhhhhcCCCccceEEcCCCChhhhHHHHhhhhccCCCCChhHHHHHHHHHHHcCCCchHH
Q 002220 326 RD-KRILDDFGVCDTDIYEVNKLRFHEALVLFSNFAFKENQCPGDLLALLERVLKYANGNPLAL 388 (951)
Q Consensus 326 R~-~~v~~~~~~~~~~~~~l~~L~~~~a~~Lf~~~~~~~~~~~~~~~~~~~~i~~~~~g~PLal 388 (951)
.+ ..+..... .....+++++++.++..+.+.+.+.......+ .+.++.|++.++|.+--+
T Consensus 162 td~~kil~TIl-SRc~~~~f~~Ls~eei~~~L~~i~~~egi~ie--~~AL~~La~~s~GslR~a 222 (618)
T PRK14951 162 TDPQKVPVTVL-SRCLQFNLRPMAPETVLEHLTQVLAAENVPAE--PQALRLLARAARGSMRDA 222 (618)
T ss_pred CCchhhhHHHH-HhceeeecCCCCHHHHHHHHHHHHHHcCCCCC--HHHHHHHHHHcCCCHHHH
Confidence 44 33322210 11278999999999999999877643322111 245678888898876443
No 108
>PF13401 AAA_22: AAA domain; PDB: 2QBY_B 1FNN_B 1W5T_A 1W5S_B.
Probab=98.17 E-value=3.9e-06 Score=78.07 Aligned_cols=113 Identities=18% Similarity=0.248 Sum_probs=68.4
Q ss_pred CcEEEEEEecCCChhHHHHHHHHHHhhcc-----ccceeecccccchhcCCCChHHHHHHHHHHHhcCccccCCCCCh-H
Q 002220 208 DFRTIGIWGMGGIGKTTLAGAVFKLISRE-----FEGKCFMPNVREESENGGGLVYLRDRVVSEIFQEDIKIGTPYLP-D 281 (951)
Q Consensus 208 ~~~vv~I~G~gGiGKTtLA~~~~~~~~~~-----f~~~~~~~~~~~~~~~~~~~~~l~~~il~~l~~~~~~~~~~~~~-~ 281 (951)
+.+.+.|+|.+|+|||++++++++..... -..++|+.... ......+...++.++............. +
T Consensus 3 ~~~~~~i~G~~G~GKT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~i~~~l~~~~~~~~~~~~l~~ 77 (131)
T PF13401_consen 3 SQRILVISGPPGSGKTTLIKRLARQLNAEAEIKNHPDVIYVNCPS-----SRTPRDFAQEILEALGLPLKSRQTSDELRS 77 (131)
T ss_dssp ----EEEEE-TTSSHHHHHHHHHHHHHHHHHHCCCEEEEEEEHHH-----HSSHHHHHHHHHHHHT-SSSSTS-HHHHHH
T ss_pred CCcccEEEcCCCCCHHHHHHHHHHHhHHhhhccCCCcEEEEEeCC-----CCCHHHHHHHHHHHhCccccccCCHHHHHH
Confidence 34689999999999999999999876543 23344553221 2256788888888887665552222222 5
Q ss_pred HHHHHhcCCc-EEEEEeCCCCh---HHHHHHHhccCCCCCCCEEEEEeCC
Q 002220 282 YIVERLNRMK-VLTVLDDVNKV---RQLHYLACVLDQFGPGSRIIITTRD 327 (951)
Q Consensus 282 ~l~~~l~~~~-~LlVlDdv~~~---~~~~~l~~~~~~~~~gs~IlvTtR~ 327 (951)
.+.+.+...+ .+||+|+++.. ..++.+..... ..+.++|+..+.
T Consensus 78 ~~~~~l~~~~~~~lviDe~~~l~~~~~l~~l~~l~~--~~~~~vvl~G~~ 125 (131)
T PF13401_consen 78 LLIDALDRRRVVLLVIDEADHLFSDEFLEFLRSLLN--ESNIKVVLVGTP 125 (131)
T ss_dssp HHHHHHHHCTEEEEEEETTHHHHTHHHHHHHHHHTC--SCBEEEEEEESS
T ss_pred HHHHHHHhcCCeEEEEeChHhcCCHHHHHHHHHHHh--CCCCeEEEEECh
Confidence 5556665544 59999999755 23455544333 566777777665
No 109
>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]
Probab=98.17 E-value=3.2e-08 Score=109.29 Aligned_cols=129 Identities=26% Similarity=0.236 Sum_probs=90.2
Q ss_pred ceeeccccCCCCCccCcccccCCCCcEEecccccccccccccccCCCCCCEEeccCCCCCCccchhcccCCCCcEEEccc
Q 002220 723 KVVKLRLWYTPIEEVPSSIECLTNLETLDLRLCERLKRVSTSICKLKSLGSLLLAFCSNLEGFPEILEKMELLETLDLER 802 (951)
Q Consensus 723 ~L~~L~l~~~~l~~lp~~l~~l~~L~~L~Ls~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~ 802 (951)
.|...+.++|.+..+..++.-++.|+.|+|++|++...- .+..|+.|++|+|++|.. ..+|..-..-..|+.|.+++
T Consensus 165 ~L~~a~fsyN~L~~mD~SLqll~ale~LnLshNk~~~v~--~Lr~l~~LkhLDlsyN~L-~~vp~l~~~gc~L~~L~lrn 241 (1096)
T KOG1859|consen 165 KLATASFSYNRLVLMDESLQLLPALESLNLSHNKFTKVD--NLRRLPKLKHLDLSYNCL-RHVPQLSMVGCKLQLLNLRN 241 (1096)
T ss_pred hHhhhhcchhhHHhHHHHHHHHHHhhhhccchhhhhhhH--HHHhcccccccccccchh-ccccccchhhhhheeeeecc
Confidence 455666777888888888888888888888888765543 467788888888888863 44443221122388888888
Q ss_pred CCCcccCccccCCCCCcEEeeccCCCCccCCcccCCcCCCCCCCCEEeccCCCCCC
Q 002220 803 TGVKELPPSFENLQGLRQLSLIGCSELKCSGWVLPTRISKLSSLERLQLSGCEIKE 858 (951)
Q Consensus 803 n~i~~l~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~l~~ 858 (951)
|.++++ ..+.++.+|+.|++++|-+..... + ..++.+..|+.|.|.+|++.-
T Consensus 242 N~l~tL-~gie~LksL~~LDlsyNll~~hse--L-~pLwsLs~L~~L~LeGNPl~c 293 (1096)
T KOG1859|consen 242 NALTTL-RGIENLKSLYGLDLSYNLLSEHSE--L-EPLWSLSSLIVLWLEGNPLCC 293 (1096)
T ss_pred cHHHhh-hhHHhhhhhhccchhHhhhhcchh--h-hHHHHHHHHHHHhhcCCcccc
Confidence 888776 456788888888888887666432 1 124556678888888887653
No 110
>PRK14958 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.16 E-value=4.2e-05 Score=87.21 Aligned_cols=182 Identities=15% Similarity=0.125 Sum_probs=106.7
Q ss_pred CCCCCCcccchhhHHHHHHhhccCCCCcEEEEEEecCCChhHHHHHHHHHHhhcc---------------------ccce
Q 002220 182 STYSDGFVGLNSRIQKIKSLLCIGLPDFRTIGIWGMGGIGKTTLAGAVFKLISRE---------------------FEGK 240 (951)
Q Consensus 182 ~~~~~~~vGr~~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~~~~~~~~~---------------------f~~~ 240 (951)
|...+++||-+.-++.|..++..+ .-...+.++|+.|+||||+|+.+++.+-.. |..+
T Consensus 12 P~~f~divGq~~v~~~L~~~~~~~-~l~ha~Lf~Gp~G~GKTt~A~~lAk~l~c~~~~~~~pCg~C~~C~~i~~g~~~d~ 90 (509)
T PRK14958 12 PRCFQEVIGQAPVVRALSNALDQQ-YLHHAYLFTGTRGVGKTTISRILAKCLNCEKGVSANPCNDCENCREIDEGRFPDL 90 (509)
T ss_pred CCCHHHhcCCHHHHHHHHHHHHhC-CCCeeEEEECCCCCCHHHHHHHHHHHhcCCCCCCcccCCCCHHHHHHhcCCCceE
Confidence 445578999999999999998543 234567899999999999999999854221 1111
Q ss_pred eecccccchhcCCCChHHHHHHHHHHHhcCccccCCCCChHHHHHHhcCCcEEEEEeCCCCh--HHHHHHHhccCCCCCC
Q 002220 241 CFMPNVREESENGGGLVYLRDRVVSEIFQEDIKIGTPYLPDYIVERLNRMKVLTVLDDVNKV--RQLHYLACVLDQFGPG 318 (951)
Q Consensus 241 ~~~~~~~~~~~~~~~~~~l~~~il~~l~~~~~~~~~~~~~~~l~~~l~~~~~LlVlDdv~~~--~~~~~l~~~~~~~~~g 318 (951)
..+... ...++..+. .++..+... -..++.-++|+|+|+.. ...+.++..+....+.
T Consensus 91 ~eidaa-----s~~~v~~iR-~l~~~~~~~---------------p~~~~~kV~iIDE~~~ls~~a~naLLk~LEepp~~ 149 (509)
T PRK14958 91 FEVDAA-----SRTKVEDTR-ELLDNIPYA---------------PTKGRFKVYLIDEVHMLSGHSFNALLKTLEEPPSH 149 (509)
T ss_pred EEEccc-----ccCCHHHHH-HHHHHHhhc---------------cccCCcEEEEEEChHhcCHHHHHHHHHHHhccCCC
Confidence 111100 011222221 122211100 01245568899999743 4566676666655567
Q ss_pred CEEEEEeCCc-hhhhhcCCCccceEEcCCCChhhhHHHHhhhhccCCCCChhHHHHHHHHHHHcCCCchHH
Q 002220 319 SRIIITTRDK-RILDDFGVCDTDIYEVNKLRFHEALVLFSNFAFKENQCPGDLLALLERVLKYANGNPLAL 388 (951)
Q Consensus 319 s~IlvTtR~~-~v~~~~~~~~~~~~~l~~L~~~~a~~Lf~~~~~~~~~~~~~~~~~~~~i~~~~~g~PLal 388 (951)
+++|++|.+. .+..... .....+++++++.++..+.+.+.+-......+ .+....|++.++|.+--+
T Consensus 150 ~~fIlattd~~kl~~tI~-SRc~~~~f~~l~~~~i~~~l~~il~~egi~~~--~~al~~ia~~s~GslR~a 217 (509)
T PRK14958 150 VKFILATTDHHKLPVTVL-SRCLQFHLAQLPPLQIAAHCQHLLKEENVEFE--NAALDLLARAANGSVRDA 217 (509)
T ss_pred eEEEEEECChHhchHHHH-HHhhhhhcCCCCHHHHHHHHHHHHHHcCCCCC--HHHHHHHHHHcCCcHHHH
Confidence 7777666543 2221110 01167899999999988777666533222111 245677888888877543
No 111
>TIGR00678 holB DNA polymerase III, delta' subunit. At position 126-127 of the seed alignment, this family lacks the HM motif of gamma/tau; at 132 it has a near-invariant A vs. an invariant F in gamma/tau.
Probab=98.16 E-value=6.6e-05 Score=74.63 Aligned_cols=90 Identities=17% Similarity=0.220 Sum_probs=61.4
Q ss_pred CCcEEEEEeCCCCh--HHHHHHHhccCCCCCCCEEEEEeCCc-hhhhhcCCCccceEEcCCCChhhhHHHHhhhhccCCC
Q 002220 289 RMKVLTVLDDVNKV--RQLHYLACVLDQFGPGSRIIITTRDK-RILDDFGVCDTDIYEVNKLRFHEALVLFSNFAFKENQ 365 (951)
Q Consensus 289 ~~~~LlVlDdv~~~--~~~~~l~~~~~~~~~gs~IlvTtR~~-~v~~~~~~~~~~~~~l~~L~~~~a~~Lf~~~~~~~~~ 365 (951)
+.+-++|+|+++.. ...+.+...+....+.+.+|++|++. .+..... .....+++.+++.++..+.+.+.. .
T Consensus 95 ~~~kviiide~~~l~~~~~~~Ll~~le~~~~~~~~il~~~~~~~l~~~i~-sr~~~~~~~~~~~~~~~~~l~~~g----i 169 (188)
T TIGR00678 95 SGRRVVIIEDAERMNEAAANALLKTLEEPPPNTLFILITPSPEKLLPTIR-SRCQVLPFPPLSEEALLQWLIRQG----I 169 (188)
T ss_pred CCeEEEEEechhhhCHHHHHHHHHHhcCCCCCeEEEEEECChHhChHHHH-hhcEEeeCCCCCHHHHHHHHHHcC----C
Confidence 45668999999654 34666776666555667777777654 2222211 112689999999999999998872 1
Q ss_pred CChhHHHHHHHHHHHcCCCchH
Q 002220 366 CPGDLLALLERVLKYANGNPLA 387 (951)
Q Consensus 366 ~~~~~~~~~~~i~~~~~g~PLa 387 (951)
. .+.+..+++.++|.|..
T Consensus 170 -~---~~~~~~i~~~~~g~~r~ 187 (188)
T TIGR00678 170 -S---EEAAELLLALAGGSPGA 187 (188)
T ss_pred -C---HHHHHHHHHHcCCCccc
Confidence 1 25688999999998853
No 112
>PF14516 AAA_35: AAA-like domain
Probab=98.14 E-value=0.00029 Score=76.46 Aligned_cols=206 Identities=14% Similarity=0.144 Sum_probs=116.9
Q ss_pred ccCCCCCCcccchhhHHHHHHhhccCCCCcEEEEEEecCCChhHHHHHHHHHHhhc-cccceeecccccchhc-CCCChH
Q 002220 180 TASTYSDGFVGLNSRIQKIKSLLCIGLPDFRTIGIWGMGGIGKTTLAGAVFKLISR-EFEGKCFMPNVREESE-NGGGLV 257 (951)
Q Consensus 180 ~~~~~~~~~vGr~~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~~~~~~~~-~f~~~~~~~~~~~~~~-~~~~~~ 257 (951)
+.+...+..|+|...-+++.+.+.. .-..+.|.|+-.+|||+|...+.+..++ .|. +++++ ...... ......
T Consensus 5 ~~~~~~~~Yi~R~~~e~~~~~~i~~---~G~~~~I~apRq~GKTSll~~l~~~l~~~~~~-~v~id-~~~~~~~~~~~~~ 79 (331)
T PF14516_consen 5 PLPLDSPFYIERPPAEQECYQEIVQ---PGSYIRIKAPRQMGKTSLLLRLLERLQQQGYR-CVYID-LQQLGSAIFSDLE 79 (331)
T ss_pred CCCCCCCcccCchHHHHHHHHHHhc---CCCEEEEECcccCCHHHHHHHHHHHHHHCCCE-EEEEE-eecCCCcccCCHH
Confidence 3455667788999555666666642 2358999999999999999999987754 444 33443 222211 123344
Q ss_pred HHHHHHHHHHhcCcc---------c--cCCCCCh-HHHHHHh---cCCcEEEEEeCCCChHH----HHHHHhccCC----
Q 002220 258 YLRDRVVSEIFQEDI---------K--IGTPYLP-DYIVERL---NRMKVLTVLDDVNKVRQ----LHYLACVLDQ---- 314 (951)
Q Consensus 258 ~l~~~il~~l~~~~~---------~--~~~~~~~-~~l~~~l---~~~~~LlVlDdv~~~~~----~~~l~~~~~~---- 314 (951)
...+.+...+...-. . ....... ..+.+.+ .+++++|++|+|+..-. .+.+.+.++.
T Consensus 80 ~f~~~~~~~i~~~L~l~~~l~~~w~~~~~~~~~~~~~~~~~ll~~~~~~lVL~iDEiD~l~~~~~~~~dF~~~LR~~~~~ 159 (331)
T PF14516_consen 80 QFLRWFCEEISRQLKLDEKLDEYWDEEIGSKISCTEYFEEYLLKQIDKPLVLFIDEIDRLFEYPQIADDFFGLLRSWYEQ 159 (331)
T ss_pred HHHHHHHHHHHHHcCCChhHHHHHHHhcCChhhHHHHHHHHHHhcCCCCEEEEEechhhhccCcchHHHHHHHHHHHHHh
Confidence 444444444322111 0 0111111 3444432 26899999999974322 1222222110
Q ss_pred ---CC-CCCEEEEEeCCchh---hhh----cCCCccceEEcCCCChhhhHHHHhhhhccCCCCChhHHHHHHHHHHHcCC
Q 002220 315 ---FG-PGSRIIITTRDKRI---LDD----FGVCDTDIYEVNKLRFHEALVLFSNFAFKENQCPGDLLALLERVLKYANG 383 (951)
Q Consensus 315 ---~~-~gs~IlvTtR~~~v---~~~----~~~~~~~~~~l~~L~~~~a~~Lf~~~~~~~~~~~~~~~~~~~~i~~~~~g 383 (951)
.. -..-.+|...+... ... .++ ...++|++|+.+|...|..++...- .. ...++|...+||
T Consensus 160 ~~~~~~~~~L~li~~~~t~~~~~~~~~~SPFNI--g~~i~L~~Ft~~ev~~L~~~~~~~~---~~---~~~~~l~~~tgG 231 (331)
T PF14516_consen 160 RKNNPIWQKLRLILAGSTEDYIILDINQSPFNI--GQPIELPDFTPEEVQELAQRYGLEF---SQ---EQLEQLMDWTGG 231 (331)
T ss_pred cccCcccceEEEEEecCcccccccCCCCCCccc--ccceeCCCCCHHHHHHHHHhhhccC---CH---HHHHHHHHHHCC
Confidence 00 01112222222211 111 122 2579999999999999998875321 11 238899999999
Q ss_pred CchHHHHHhhhcCCC
Q 002220 384 NPLALRVLGSFFHRK 398 (951)
Q Consensus 384 ~PLal~~~~~~L~~~ 398 (951)
+|.-+..++..+...
T Consensus 232 hP~Lv~~~~~~l~~~ 246 (331)
T PF14516_consen 232 HPYLVQKACYLLVEE 246 (331)
T ss_pred CHHHHHHHHHHHHHc
Confidence 999999999888653
No 113
>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A ....
Probab=98.13 E-value=2.1e-06 Score=67.26 Aligned_cols=12 Identities=50% Similarity=0.609 Sum_probs=4.4
Q ss_pred cCCCCCcEEeec
Q 002220 813 ENLQGLRQLSLI 824 (951)
Q Consensus 813 ~~l~~L~~L~l~ 824 (951)
.++++|++|+++
T Consensus 46 ~~l~~L~~L~l~ 57 (61)
T PF13855_consen 46 SNLPNLRYLDLS 57 (61)
T ss_dssp TTSTTESEEEET
T ss_pred cCCCCCCEEeCc
Confidence 333333333333
No 114
>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]
Probab=98.13 E-value=4.1e-08 Score=108.48 Aligned_cols=152 Identities=24% Similarity=0.300 Sum_probs=106.1
Q ss_pred CcccccCCCCcEEecccccccccccccccCC-CCCCEEeccCCCCCCccchhc----cc------CCCCcEEEcccCCCc
Q 002220 738 PSSIECLTNLETLDLRLCERLKRVSTSICKL-KSLGSLLLAFCSNLEGFPEIL----EK------MELLETLDLERTGVK 806 (951)
Q Consensus 738 p~~l~~l~~L~~L~Ls~~~~~~~~~~~~~~l-~~L~~L~l~~~~~~~~~~~~l----~~------l~~L~~L~l~~n~i~ 806 (951)
|-++..+..|++|.+.+|++... .++..+ ..|++|.-.+ + +..+-+.| +. -..|...+.++|.+.
T Consensus 102 pi~ifpF~sLr~LElrg~~L~~~--~GL~~lr~qLe~LIC~~-S-l~Al~~v~ascggd~~ns~~Wn~L~~a~fsyN~L~ 177 (1096)
T KOG1859|consen 102 PISIFPFRSLRVLELRGCDLSTA--KGLQELRHQLEKLICHN-S-LDALRHVFASCGGDISNSPVWNKLATASFSYNRLV 177 (1096)
T ss_pred CceeccccceeeEEecCcchhhh--hhhHHHHHhhhhhhhhc-c-HHHHHHHHHHhccccccchhhhhHhhhhcchhhHH
Confidence 44567788888999888876441 111111 2233332211 1 11111111 11 124677778889988
Q ss_pred ccCccccCCCCCcEEeeccCCCCccCCcccCCcCCCCCCCCEEeccCCCCCCcCccCCCCCCCCEEEccCCCCcccchhh
Q 002220 807 ELPPSFENLQGLRQLSLIGCSELKCSGWVLPTRISKLSSLERLQLSGCEIKEIPEDIDCLSSLEVLDLSGSKIEILPTSI 886 (951)
Q Consensus 807 ~l~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~l~~l~~~l~~l~~L~~L~L~~n~l~~l~~~l 886 (951)
.+..++.-++.|+.|+|++|+.... ..+..++.|++|+|++|.+..+|..-..-..|+.|.|++|.++++- ++
T Consensus 178 ~mD~SLqll~ale~LnLshNk~~~v------~~Lr~l~~LkhLDlsyN~L~~vp~l~~~gc~L~~L~lrnN~l~tL~-gi 250 (1096)
T KOG1859|consen 178 LMDESLQLLPALESLNLSHNKFTKV------DNLRRLPKLKHLDLSYNCLRHVPQLSMVGCKLQLLNLRNNALTTLR-GI 250 (1096)
T ss_pred hHHHHHHHHHHhhhhccchhhhhhh------HHHHhcccccccccccchhccccccchhhhhheeeeecccHHHhhh-hH
Confidence 8888888899999999999988763 2578889999999999999988864333335999999999999885 78
Q ss_pred cCCCCCCEEeeCCC
Q 002220 887 GQLSRLRQLNLLDC 900 (951)
Q Consensus 887 ~~l~~L~~L~L~~~ 900 (951)
.++.+|+.|++++|
T Consensus 251 e~LksL~~LDlsyN 264 (1096)
T KOG1859|consen 251 ENLKSLYGLDLSYN 264 (1096)
T ss_pred HhhhhhhccchhHh
Confidence 89999999999985
No 115
>PRK14969 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.12 E-value=4.2e-05 Score=87.87 Aligned_cols=180 Identities=14% Similarity=0.090 Sum_probs=105.2
Q ss_pred CCCCCCcccchhhHHHHHHhhccCCCCcEEEEEEecCCChhHHHHHHHHHHhhcccc---------------------ce
Q 002220 182 STYSDGFVGLNSRIQKIKSLLCIGLPDFRTIGIWGMGGIGKTTLAGAVFKLISREFE---------------------GK 240 (951)
Q Consensus 182 ~~~~~~~vGr~~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~~~~~~~~~f~---------------------~~ 240 (951)
|....++||-+.-++.|..++..+. -.+.+.++|+.|+||||+|+.+++.+-.... ..
T Consensus 12 P~~f~divGq~~v~~~L~~~i~~~~-~~ha~Lf~Gp~G~GKTt~A~~lAk~l~c~~~~~~~pcg~C~~C~~i~~~~~~d~ 90 (527)
T PRK14969 12 PKSFSELVGQEHVVRALTNALEQQR-LHHAYLFTGTRGVGKTTLARILAKSLNCETGVTATPCGVCSACLEIDSGRFVDL 90 (527)
T ss_pred CCcHHHhcCcHHHHHHHHHHHHcCC-CCEEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCCCCHHHHHHhcCCCCce
Confidence 3445679999999999999886432 2456789999999999999999986532110 01
Q ss_pred eecccccchhcCCCChHHHHHHHHHHHhcCccccCCCCChHHHHHHhcCCcEEEEEeCCCChH--HHHHHHhccCCCCCC
Q 002220 241 CFMPNVREESENGGGLVYLRDRVVSEIFQEDIKIGTPYLPDYIVERLNRMKVLTVLDDVNKVR--QLHYLACVLDQFGPG 318 (951)
Q Consensus 241 ~~~~~~~~~~~~~~~~~~l~~~il~~l~~~~~~~~~~~~~~~l~~~l~~~~~LlVlDdv~~~~--~~~~l~~~~~~~~~g 318 (951)
+++.. .. ..++..+ +.++...... -..+++-++|+|+++... ..+.++..+......
T Consensus 91 ~ei~~----~~-~~~vd~i-r~l~~~~~~~---------------p~~~~~kVvIIDEad~ls~~a~naLLK~LEepp~~ 149 (527)
T PRK14969 91 IEVDA----AS-NTQVDAM-RELLDNAQYA---------------PTRGRFKVYIIDEVHMLSKSAFNAMLKTLEEPPEH 149 (527)
T ss_pred eEeec----cc-cCCHHHH-HHHHHHHhhC---------------cccCCceEEEEcCcccCCHHHHHHHHHHHhCCCCC
Confidence 11100 00 0111111 1111111000 012456799999997553 366666666554556
Q ss_pred CEEEEEeCCc-hhhhhcCCCccceEEcCCCChhhhHHHHhhhhccCCCCChhHHHHHHHHHHHcCCCch
Q 002220 319 SRIIITTRDK-RILDDFGVCDTDIYEVNKLRFHEALVLFSNFAFKENQCPGDLLALLERVLKYANGNPL 386 (951)
Q Consensus 319 s~IlvTtR~~-~v~~~~~~~~~~~~~l~~L~~~~a~~Lf~~~~~~~~~~~~~~~~~~~~i~~~~~g~PL 386 (951)
+.+|++|.+. .+..... .....+++++++.++..+.+.+.+-..... ...+.++.|++.++|.+-
T Consensus 150 ~~fIL~t~d~~kil~tI~-SRc~~~~f~~l~~~~i~~~L~~il~~egi~--~~~~al~~la~~s~Gslr 215 (527)
T PRK14969 150 VKFILATTDPQKIPVTVL-SRCLQFNLKQMPPPLIVSHLQHILEQENIP--FDATALQLLARAAAGSMR 215 (527)
T ss_pred EEEEEEeCChhhCchhHH-HHHHHHhcCCCCHHHHHHHHHHHHHHcCCC--CCHHHHHHHHHHcCCCHH
Confidence 6666655443 2221110 011679999999999998887765322211 122456778889999775
No 116
>KOG2028 consensus ATPase related to the helicase subunit of the Holliday junction resolvase [Replication, recombination and repair]
Probab=98.12 E-value=6.8e-06 Score=84.12 Aligned_cols=149 Identities=17% Similarity=0.260 Sum_probs=86.7
Q ss_pred CCCcccchhhHHH---HHHhhccCCCCcEEEEEEecCCChhHHHHHHHHHHhhccccceeecccccchhcCCCChHHHHH
Q 002220 185 SDGFVGLNSRIQK---IKSLLCIGLPDFRTIGIWGMGGIGKTTLAGAVFKLISREFEGKCFMPNVREESENGGGLVYLRD 261 (951)
Q Consensus 185 ~~~~vGr~~~~~~---l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~l~~ 261 (951)
-++.||.+..+.+ |.+++ +.+....+.+||++|+||||||+.++..-+.+- ..|+.. +........+ +
T Consensus 137 L~dyvGQ~hlv~q~gllrs~i--eq~~ipSmIlWGppG~GKTtlArlia~tsk~~S--yrfvel----SAt~a~t~dv-R 207 (554)
T KOG2028|consen 137 LDDYVGQSHLVGQDGLLRSLI--EQNRIPSMILWGPPGTGKTTLARLIASTSKKHS--YRFVEL----SATNAKTNDV-R 207 (554)
T ss_pred HHHhcchhhhcCcchHHHHHH--HcCCCCceEEecCCCCchHHHHHHHHhhcCCCc--eEEEEE----eccccchHHH-H
Confidence 3455665544322 33333 235677888999999999999999998544331 233321 1112233332 2
Q ss_pred HHHHHHhcCccccCCCCChHHHHHHhcCCcEEEEEeCCC--ChHHHHHHHhccCCCCCCCEEEE--EeCCchhhhh-cCC
Q 002220 262 RVVSEIFQEDIKIGTPYLPDYIVERLNRMKVLTVLDDVN--KVRQLHYLACVLDQFGPGSRIII--TTRDKRILDD-FGV 336 (951)
Q Consensus 262 ~il~~l~~~~~~~~~~~~~~~l~~~l~~~~~LlVlDdv~--~~~~~~~l~~~~~~~~~gs~Ilv--TtR~~~v~~~-~~~ 336 (951)
.++++. .=...+.++|.+|.+|.|. +..|-+.+++. ..+|.-++| ||.++...-. .-.
T Consensus 208 ~ife~a--------------q~~~~l~krkTilFiDEiHRFNksQQD~fLP~---VE~G~I~lIGATTENPSFqln~aLl 270 (554)
T KOG2028|consen 208 DIFEQA--------------QNEKSLTKRKTILFIDEIHRFNKSQQDTFLPH---VENGDITLIGATTENPSFQLNAALL 270 (554)
T ss_pred HHHHHH--------------HHHHhhhcceeEEEeHHhhhhhhhhhhcccce---eccCceEEEecccCCCccchhHHHH
Confidence 222221 1122346789999999995 44444444433 346765554 7777643110 001
Q ss_pred CccceEEcCCCChhhhHHHHhhh
Q 002220 337 CDTDIYEVNKLRFHEALVLFSNF 359 (951)
Q Consensus 337 ~~~~~~~l~~L~~~~a~~Lf~~~ 359 (951)
....++.+++|+.++...++.+.
T Consensus 271 SRC~VfvLekL~~n~v~~iL~ra 293 (554)
T KOG2028|consen 271 SRCRVFVLEKLPVNAVVTILMRA 293 (554)
T ss_pred hccceeEeccCCHHHHHHHHHHH
Confidence 12278999999999999998873
No 117
>PRK14955 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.10 E-value=5.4e-05 Score=84.42 Aligned_cols=199 Identities=14% Similarity=0.117 Sum_probs=108.1
Q ss_pred CCCCCCcccchhhHHHHHHhhccCCCCcEEEEEEecCCChhHHHHHHHHHHhhcc--ccceeecccccchhcCCCChHHH
Q 002220 182 STYSDGFVGLNSRIQKIKSLLCIGLPDFRTIGIWGMGGIGKTTLAGAVFKLISRE--FEGKCFMPNVREESENGGGLVYL 259 (951)
Q Consensus 182 ~~~~~~~vGr~~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~~~~~~~~~--f~~~~~~~~~~~~~~~~~~~~~l 259 (951)
|.....++|.+.-++.|..++..+ .-...+.++|+.|+||||+|+.+++.+... +...-|...+.. ..+.-..
T Consensus 12 P~~~~eiiGq~~~~~~L~~~~~~~-~~~ha~lf~Gp~G~GKtt~A~~~a~~l~c~~~~~~~~~~~~~~~----~c~~c~~ 86 (397)
T PRK14955 12 PKKFADITAQEHITRTIQNSLRMG-RVGHGYIFSGLRGVGKTTAARVFAKAVNCQRMIDDADYLQEVTE----PCGECES 86 (397)
T ss_pred CCcHhhccChHHHHHHHHHHHHhC-CcceeEEEECCCCCCHHHHHHHHHHHhcCCCCcCcccccccCCC----CCCCCHH
Confidence 445578999999999999988543 224568899999999999999999866321 100000000000 0000000
Q ss_pred HHHHHHHHhcC----cc-ccCCCCChHHHHHHh-----cCCcEEEEEeCCCCh--HHHHHHHhccCCCCCCCEEEEEe-C
Q 002220 260 RDRVVSEIFQE----DI-KIGTPYLPDYIVERL-----NRMKVLTVLDDVNKV--RQLHYLACVLDQFGPGSRIIITT-R 326 (951)
Q Consensus 260 ~~~il~~l~~~----~~-~~~~~~~~~~l~~~l-----~~~~~LlVlDdv~~~--~~~~~l~~~~~~~~~gs~IlvTt-R 326 (951)
-+.+....... +. .....+....+.+.+ .+++-++|+|+++.. ..++.+...+....+.+.+|++| +
T Consensus 87 c~~~~~~~~~n~~~~~~~~~~~id~Ir~l~~~~~~~p~~~~~kvvIIdea~~l~~~~~~~LLk~LEep~~~t~~Il~t~~ 166 (397)
T PRK14955 87 CRDFDAGTSLNISEFDAASNNSVDDIRLLRENVRYGPQKGRYRVYIIDEVHMLSIAAFNAFLKTLEEPPPHAIFIFATTE 166 (397)
T ss_pred HHHHhcCCCCCeEeecccccCCHHHHHHHHHHHhhchhcCCeEEEEEeChhhCCHHHHHHHHHHHhcCCCCeEEEEEeCC
Confidence 00111000000 00 000000011122222 245568899999744 35667776666555666666555 4
Q ss_pred CchhhhhcCCCccceEEcCCCChhhhHHHHhhhhccCCCCChhHHHHHHHHHHHcCCCchHH
Q 002220 327 DKRILDDFGVCDTDIYEVNKLRFHEALVLFSNFAFKENQCPGDLLALLERVLKYANGNPLAL 388 (951)
Q Consensus 327 ~~~v~~~~~~~~~~~~~l~~L~~~~a~~Lf~~~~~~~~~~~~~~~~~~~~i~~~~~g~PLal 388 (951)
...+..... .....+++.+++.++..+.+...+-.... .-..+.++.+++.++|.+--+
T Consensus 167 ~~kl~~tl~-sR~~~v~f~~l~~~ei~~~l~~~~~~~g~--~i~~~al~~l~~~s~g~lr~a 225 (397)
T PRK14955 167 LHKIPATIA-SRCQRFNFKRIPLEEIQQQLQGICEAEGI--SVDADALQLIGRKAQGSMRDA 225 (397)
T ss_pred hHHhHHHHH-HHHHHhhcCCCCHHHHHHHHHHHHHHcCC--CCCHHHHHHHHHHcCCCHHHH
Confidence 334432211 01157899999999999888876532221 112356788999999987533
No 118
>PRK03992 proteasome-activating nucleotidase; Provisional
Probab=98.09 E-value=3.9e-05 Score=85.16 Aligned_cols=172 Identities=23% Similarity=0.276 Sum_probs=96.4
Q ss_pred CCCCcccchhhHHHHHHhhcc-----------CCCCcEEEEEEecCCChhHHHHHHHHHHhhccccceeecccccchhcC
Q 002220 184 YSDGFVGLNSRIQKIKSLLCI-----------GLPDFRTIGIWGMGGIGKTTLAGAVFKLISREFEGKCFMPNVREESEN 252 (951)
Q Consensus 184 ~~~~~vGr~~~~~~l~~~L~~-----------~~~~~~vv~I~G~gGiGKTtLA~~~~~~~~~~f~~~~~~~~~~~~~~~ 252 (951)
..+++.|++..+++|.+.+.. +-...+-|.++|++|+|||++|+++++.....|-. +. ..
T Consensus 129 ~~~di~Gl~~~~~~l~~~i~~pl~~~~~~~~~g~~~p~gvLL~GppGtGKT~lAkaia~~~~~~~i~---v~-~~----- 199 (389)
T PRK03992 129 TYEDIGGLEEQIREVREAVELPLKKPELFEEVGIEPPKGVLLYGPPGTGKTLLAKAVAHETNATFIR---VV-GS----- 199 (389)
T ss_pred CHHHhCCcHHHHHHHHHHHHHHhhCHHHHHhcCCCCCCceEEECCCCCChHHHHHHHHHHhCCCEEE---ee-hH-----
Confidence 345788999999999887631 11345678999999999999999999876543321 11 00
Q ss_pred CCChHHHHHHHHHHHhcCccccCCCCCh-HHHHHHhcCCcEEEEEeCCCChH------------H----HHHHHhccCCC
Q 002220 253 GGGLVYLRDRVVSEIFQEDIKIGTPYLP-DYIVERLNRMKVLTVLDDVNKVR------------Q----LHYLACVLDQF 315 (951)
Q Consensus 253 ~~~~~~l~~~il~~l~~~~~~~~~~~~~-~~l~~~l~~~~~LlVlDdv~~~~------------~----~~~l~~~~~~~ 315 (951)
.+ .....+. ..... ..+...-...+.+|+||+++... . +..+...+...
T Consensus 200 -----~l----~~~~~g~-----~~~~i~~~f~~a~~~~p~IlfiDEiD~l~~~r~~~~~~~~~~~~~~l~~lL~~ld~~ 265 (389)
T PRK03992 200 -----EL----VQKFIGE-----GARLVRELFELAREKAPSIIFIDEIDAIAAKRTDSGTSGDREVQRTLMQLLAEMDGF 265 (389)
T ss_pred -----HH----hHhhccc-----hHHHHHHHHHHHHhcCCeEEEEechhhhhcccccCCCCccHHHHHHHHHHHHhcccc
Confidence 00 0000000 00000 11111113456899999996431 1 11222222211
Q ss_pred --CCCCEEEEEeCCchhhhhc-----CCCccceEEcCCCChhhhHHHHhhhhccCCCCC-hhHHHHHHHHHHHcCCC
Q 002220 316 --GPGSRIIITTRDKRILDDF-----GVCDTDIYEVNKLRFHEALVLFSNFAFKENQCP-GDLLALLERVLKYANGN 384 (951)
Q Consensus 316 --~~gs~IlvTtR~~~v~~~~-----~~~~~~~~~l~~L~~~~a~~Lf~~~~~~~~~~~-~~~~~~~~~i~~~~~g~ 384 (951)
..+.+||.||......... ..+ ..++++..+.++..++|..+..+..... .+ ...+++.+.|.
T Consensus 266 ~~~~~v~VI~aTn~~~~ld~allRpgRfd--~~I~v~~P~~~~R~~Il~~~~~~~~~~~~~~----~~~la~~t~g~ 336 (389)
T PRK03992 266 DPRGNVKIIAATNRIDILDPAILRPGRFD--RIIEVPLPDEEGRLEILKIHTRKMNLADDVD----LEELAELTEGA 336 (389)
T ss_pred CCCCCEEEEEecCChhhCCHHHcCCccCc--eEEEECCCCHHHHHHHHHHHhccCCCCCcCC----HHHHHHHcCCC
Confidence 2356677777655432211 233 6799999999999999998774432221 22 34555666664
No 119
>PRK14087 dnaA chromosomal replication initiation protein; Provisional
Probab=98.07 E-value=4.5e-05 Score=85.89 Aligned_cols=164 Identities=13% Similarity=0.189 Sum_probs=96.5
Q ss_pred cEEEEEEecCCChhHHHHHHHHHHhhccc--cceeecccccchhcCCCChHHHHHHHHHHHhcCccccCCCCChHHHHHH
Q 002220 209 FRTIGIWGMGGIGKTTLAGAVFKLISREF--EGKCFMPNVREESENGGGLVYLRDRVVSEIFQEDIKIGTPYLPDYIVER 286 (951)
Q Consensus 209 ~~vv~I~G~gGiGKTtLA~~~~~~~~~~f--~~~~~~~~~~~~~~~~~~~~~l~~~il~~l~~~~~~~~~~~~~~~l~~~ 286 (951)
...+.|+|..|+|||+|++++++.+.... ..++|+. ...+...+...+.... ...+.+++.
T Consensus 141 ~npl~i~G~~G~GKTHLl~Ai~~~l~~~~~~~~v~yv~-----------~~~f~~~~~~~l~~~~------~~~~~~~~~ 203 (450)
T PRK14087 141 YNPLFIYGESGMGKTHLLKAAKNYIESNFSDLKVSYMS-----------GDEFARKAVDILQKTH------KEIEQFKNE 203 (450)
T ss_pred cCceEEECCCCCcHHHHHHHHHHHHHHhCCCCeEEEEE-----------HHHHHHHHHHHHHHhh------hHHHHHHHH
Confidence 35688999999999999999999765432 2234442 1233444444433210 111334444
Q ss_pred hcCCcEEEEEeCCCChH---H-HHHHHhccCC-CCCCCEEEEEeCCc---------hhhhhcCCCccceEEcCCCChhhh
Q 002220 287 LNRMKVLTVLDDVNKVR---Q-LHYLACVLDQ-FGPGSRIIITTRDK---------RILDDFGVCDTDIYEVNKLRFHEA 352 (951)
Q Consensus 287 l~~~~~LlVlDdv~~~~---~-~~~l~~~~~~-~~~gs~IlvTtR~~---------~v~~~~~~~~~~~~~l~~L~~~~a 352 (951)
+++ .-+||+||+.... . .+.+...+.. ...|..||+|+... .+...+... -++++++++.++.
T Consensus 204 ~~~-~dvLiIDDiq~l~~k~~~~e~lf~l~N~~~~~~k~iIltsd~~P~~l~~l~~rL~SR~~~G--l~~~L~~pd~e~r 280 (450)
T PRK14087 204 ICQ-NDVLIIDDVQFLSYKEKTNEIFFTIFNNFIENDKQLFFSSDKSPELLNGFDNRLITRFNMG--LSIAIQKLDNKTA 280 (450)
T ss_pred hcc-CCEEEEeccccccCCHHHHHHHHHHHHHHHHcCCcEEEECCCCHHHHhhccHHHHHHHhCC--ceeccCCcCHHHH
Confidence 443 4478899995332 1 2333222221 13455688887543 222333222 5788999999999
Q ss_pred HHHHhhhhccCCCCChhHHHHHHHHHHHcCCCchHHHHHh
Q 002220 353 LVLFSNFAFKENQCPGDLLALLERVLKYANGNPLALRVLG 392 (951)
Q Consensus 353 ~~Lf~~~~~~~~~~~~~~~~~~~~i~~~~~g~PLal~~~~ 392 (951)
.+++.+++-.......-.++++.-|++.++|.|-.+.-+.
T Consensus 281 ~~iL~~~~~~~gl~~~l~~evl~~Ia~~~~gd~R~L~gaL 320 (450)
T PRK14087 281 TAIIKKEIKNQNIKQEVTEEAINFISNYYSDDVRKIKGSV 320 (450)
T ss_pred HHHHHHHHHhcCCCCCCCHHHHHHHHHccCCCHHHHHHHH
Confidence 9999988743221011224677889999999987766544
No 120
>TIGR02881 spore_V_K stage V sporulation protein K. Members of this protein family are the stage V sporulation protein K (SpoVK), a close homolog of the Rubisco expression protein CbbX (TIGR02880) and a members of the ATPase family associated with various cellular activities (pfam00004). Members are strictly limited to bacterial endospore-forming species, but are not universal in this group and are missing from the Clostridium group.
Probab=98.04 E-value=6.1e-05 Score=79.05 Aligned_cols=150 Identities=15% Similarity=0.123 Sum_probs=79.6
Q ss_pred CcccchhhHHHHHHhhc-------------cCCCCcEEEEEEecCCChhHHHHHHHHHHhhccc--cceeecccccchhc
Q 002220 187 GFVGLNSRIQKIKSLLC-------------IGLPDFRTIGIWGMGGIGKTTLAGAVFKLISREF--EGKCFMPNVREESE 251 (951)
Q Consensus 187 ~~vGr~~~~~~l~~~L~-------------~~~~~~~vv~I~G~gGiGKTtLA~~~~~~~~~~f--~~~~~~~~~~~~~~ 251 (951)
.++|.+...++|.+... ...+...-+.++|++|+||||+|+.+++.+...- ....++. +.
T Consensus 7 ~~~Gl~~vk~~i~~~~~~~~~~~~~~~~g~~~~~~~~~vll~GppGtGKTtlA~~ia~~l~~~~~~~~~~~v~-~~---- 81 (261)
T TIGR02881 7 RMVGLDEVKALIKEIYAWIQINEKRKEEGLKTSKQVLHMIFKGNPGTGKTTVARILGKLFKEMNVLSKGHLIE-VE---- 81 (261)
T ss_pred HhcChHHHHHHHHHHHHHHHHHHHHHHcCCCCCCCcceEEEEcCCCCCHHHHHHHHHHHHHhcCcccCCceEE-ec----
Confidence 47787777666654321 0123456788999999999999999998653211 1111111 00
Q ss_pred CCCChHHHHHHHHHHHhcCccccCCCCChHHHHHHhc-CCcEEEEEeCCCCh----------HHHHHHHhccCCCCCCCE
Q 002220 252 NGGGLVYLRDRVVSEIFQEDIKIGTPYLPDYIVERLN-RMKVLTVLDDVNKV----------RQLHYLACVLDQFGPGSR 320 (951)
Q Consensus 252 ~~~~~~~l~~~il~~l~~~~~~~~~~~~~~~l~~~l~-~~~~LlVlDdv~~~----------~~~~~l~~~~~~~~~gs~ 320 (951)
... +.....+. ....+++.+. ...-+|++|+++.. +..+.+............
T Consensus 82 ----~~~----l~~~~~g~--------~~~~~~~~~~~a~~~VL~IDE~~~L~~~~~~~~~~~~i~~Ll~~~e~~~~~~~ 145 (261)
T TIGR02881 82 ----RAD----LVGEYIGH--------TAQKTREVIKKALGGVLFIDEAYSLARGGEKDFGKEAIDTLVKGMEDNRNEFV 145 (261)
T ss_pred ----HHH----hhhhhccc--------hHHHHHHHHHhccCCEEEEechhhhccCCccchHHHHHHHHHHHHhccCCCEE
Confidence 000 11110000 0011222221 12348899999642 234555555444333445
Q ss_pred EEEEeCCchh----------hhhcCCCccceEEcCCCChhhhHHHHhhhhc
Q 002220 321 IIITTRDKRI----------LDDFGVCDTDIYEVNKLRFHEALVLFSNFAF 361 (951)
Q Consensus 321 IlvTtR~~~v----------~~~~~~~~~~~~~l~~L~~~~a~~Lf~~~~~ 361 (951)
+++++..... ... .. ..+.+++++.++..+++.+.+.
T Consensus 146 vila~~~~~~~~~~~~~p~L~sR--f~--~~i~f~~~~~~el~~Il~~~~~ 192 (261)
T TIGR02881 146 LILAGYSDEMDYFLSLNPGLRSR--FP--ISIDFPDYTVEELMEIAERMVK 192 (261)
T ss_pred EEecCCcchhHHHHhcChHHHhc--cc--eEEEECCCCHHHHHHHHHHHHH
Confidence 5555543322 122 11 4689999999999999987764
No 121
>PRK09111 DNA polymerase III subunits gamma and tau; Validated
Probab=98.04 E-value=0.00022 Score=82.57 Aligned_cols=195 Identities=14% Similarity=0.130 Sum_probs=110.3
Q ss_pred CCCCCCcccchhhHHHHHHhhccCCCCcEEEEEEecCCChhHHHHHHHHHHhhccccc----eeecccccchhcCCCChH
Q 002220 182 STYSDGFVGLNSRIQKIKSLLCIGLPDFRTIGIWGMGGIGKTTLAGAVFKLISREFEG----KCFMPNVREESENGGGLV 257 (951)
Q Consensus 182 ~~~~~~~vGr~~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~~~~~~~~~f~~----~~~~~~~~~~~~~~~~~~ 257 (951)
|....+++|.+..++.|.+.+..+ .-...+.++|+.|+||||+|+.+++.+-..... ..+-.+. .-
T Consensus 20 P~~f~dliGq~~~v~~L~~~~~~g-ri~ha~L~~Gp~GvGKTt~Ar~lAk~L~c~~~~~~~~~~~~~cg---------~c 89 (598)
T PRK09111 20 PQTFDDLIGQEAMVRTLTNAFETG-RIAQAFMLTGVRGVGKTTTARILARALNYEGPDGDGGPTIDLCG---------VG 89 (598)
T ss_pred CCCHHHhcCcHHHHHHHHHHHHcC-CCCceEEEECCCCCCHHHHHHHHHHhhCcCCccccCCCccccCc---------cc
Confidence 345578999999999999988643 234578899999999999999999865332210 0000000 00
Q ss_pred HHHHHHHHHHhcCccccC-CCCCh-HHHHHH---h-----cCCcEEEEEeCCCCh--HHHHHHHhccCCCCCCCEEEEEe
Q 002220 258 YLRDRVVSEIFQEDIKIG-TPYLP-DYIVER---L-----NRMKVLTVLDDVNKV--RQLHYLACVLDQFGPGSRIIITT 325 (951)
Q Consensus 258 ~l~~~il~~l~~~~~~~~-~~~~~-~~l~~~---l-----~~~~~LlVlDdv~~~--~~~~~l~~~~~~~~~gs~IlvTt 325 (951)
.-.+.+.......-.... ..... +.+++. . .+++-++|+|+++.. ...+.+...+....+++.+|++|
T Consensus 90 ~~C~~i~~g~h~Dv~e~~a~s~~gvd~IReIie~~~~~P~~a~~KVvIIDEad~Ls~~a~naLLKtLEePp~~~~fIl~t 169 (598)
T PRK09111 90 EHCQAIMEGRHVDVLEMDAASHTGVDDIREIIESVRYRPVSARYKVYIIDEVHMLSTAAFNALLKTLEEPPPHVKFIFAT 169 (598)
T ss_pred HHHHHHhcCCCCceEEecccccCCHHHHHHHHHHHHhchhcCCcEEEEEEChHhCCHHHHHHHHHHHHhCCCCeEEEEEe
Confidence 000111110000000000 00001 222222 1 234557899999644 34666666665555666666555
Q ss_pred -CCchhhhhcCCCccceEEcCCCChhhhHHHHhhhhccCCCCChhHHHHHHHHHHHcCCCchHHH
Q 002220 326 -RDKRILDDFGVCDTDIYEVNKLRFHEALVLFSNFAFKENQCPGDLLALLERVLKYANGNPLALR 389 (951)
Q Consensus 326 -R~~~v~~~~~~~~~~~~~l~~L~~~~a~~Lf~~~~~~~~~~~~~~~~~~~~i~~~~~g~PLal~ 389 (951)
....+..... .....+++..++.++....+.+.+-...... ..+.++.|++.++|.+.-+.
T Consensus 170 te~~kll~tI~-SRcq~~~f~~l~~~el~~~L~~i~~kegi~i--~~eAl~lIa~~a~Gdlr~al 231 (598)
T PRK09111 170 TEIRKVPVTVL-SRCQRFDLRRIEADVLAAHLSRIAAKEGVEV--EDEALALIARAAEGSVRDGL 231 (598)
T ss_pred CChhhhhHHHH-hheeEEEecCCCHHHHHHHHHHHHHHcCCCC--CHHHHHHHHHHcCCCHHHHH
Confidence 4344332221 1126899999999999999988764332211 12567788999999876543
No 122
>PF08937 DUF1863: MTH538 TIR-like domain (DUF1863); InterPro: IPR015032 This protein adopts the flavodoxin fold, that is, five parallel beta-strands and four helical segments. The structure is a three-layer sandwich with alpha-1 and alpha-4 on one side of the beta-sheet, and alpha-2 and alpha-3 on the other side. Probable role in signal transduction as a phosphorylation-independent conformational switch protein []. This domain is similar to the TIR domain [].; PDB: 3HYN_A.
Probab=98.04 E-value=9.6e-06 Score=74.74 Aligned_cols=91 Identities=19% Similarity=0.363 Sum_probs=48.7
Q ss_pred ccEEEcccccccccchHHHHHHHHHhC-------CCeE----------EecCcccCCCCCchHHHHHHhhccceEEEEec
Q 002220 11 FDVFLSFRGEDTRDNFTSHLYAALCRK-------KIKT----------FIDDEELRRGDDISPALLNAIQGSKISVIIFS 73 (951)
Q Consensus 11 ~dvfis~~~~d~~~~~~~~l~~~L~~~-------g~~~----------~~d~~~~~~g~~~~~~~~~~i~~s~~~i~v~s 73 (951)
|.|||||++.|.. ..+..|...+... .+.. +.+..+....+.|...|.++|.+|.++||+++
T Consensus 1 ~~vFIS~~~~d~~-~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ik~~I~~~i~~s~~~IVLig 79 (130)
T PF08937_consen 1 YKVFISYSHDDDD-WYYDQLKEWLENSYEIPRDKNFDFRFYDVSKWEPIRSRDDDSSSEYIKRKIRERIKNSSVTIVLIG 79 (130)
T ss_dssp ----------THH--HHHHHHHHHHH-------TTSS--BT---TTT---TTS---TTTTHHHHHHHHHHTEEEEEEE--
T ss_pred CCccccccccCcH-HHHHHHHHHhccccccccccccccCcccccccCcccCccccchHHHHHHHHHHHHhcCCEEEEEeC
Confidence 5799999999842 3777777777663 2211 12222233345789999999999999999999
Q ss_pred CCcccchhhHHHHHHHHHhhhcCCCeEEEEEee
Q 002220 74 KDYASSKWCLDELVKILDCKNLNGQMVVPVFYQ 106 (951)
Q Consensus 74 ~~~~~s~wc~~el~~~~~~~~~~~~~~~pv~~~ 106 (951)
++-..|.|+..|+..+++ .+..|+-|..+
T Consensus 80 ~~T~~s~wV~~EI~~A~~----~~~~Ii~V~~~ 108 (130)
T PF08937_consen 80 PNTAKSKWVNWEIEYALK----KGKPIIGVYLP 108 (130)
T ss_dssp TT----HHHHHHHHHHTT----T---EEEEETT
T ss_pred CCcccCcHHHHHHHHHHH----CCCCEEEEECC
Confidence 999999999999998875 34457777644
No 123
>PRK07764 DNA polymerase III subunits gamma and tau; Validated
Probab=98.03 E-value=0.0002 Score=85.97 Aligned_cols=186 Identities=15% Similarity=0.143 Sum_probs=106.7
Q ss_pred CCCCCCcccchhhHHHHHHhhccCCCCcEEEEEEecCCChhHHHHHHHHHHhhccc--cc-eeecc--------------
Q 002220 182 STYSDGFVGLNSRIQKIKSLLCIGLPDFRTIGIWGMGGIGKTTLAGAVFKLISREF--EG-KCFMP-------------- 244 (951)
Q Consensus 182 ~~~~~~~vGr~~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~~~~~~~~~f--~~-~~~~~-------------- 244 (951)
|....++||.+..++.|...+..+. -.+.+.++|..|+||||+|+.+++.+-... .. -|=.+
T Consensus 11 P~~f~eiiGqe~v~~~L~~~i~~~r-i~Ha~Lf~Gp~G~GKTt~A~~lAr~L~C~~~~~~~pCg~C~sC~~~~~g~~~~~ 89 (824)
T PRK07764 11 PATFAEVIGQEHVTEPLSTALDSGR-INHAYLFSGPRGCGKTSSARILARSLNCVEGPTSTPCGECDSCVALAPGGPGSL 89 (824)
T ss_pred CCCHHHhcCcHHHHHHHHHHHHhCC-CCceEEEECCCCCCHHHHHHHHHHHhCcccCCCCCCCcccHHHHHHHcCCCCCC
Confidence 3445679999999999999986432 345788999999999999999998653211 00 00000
Q ss_pred cccchhc-CCCChHHHHHHHHHHHhcCccccCCCCChHHHHHHhcCCcEEEEEeCCCCh--HHHHHHHhccCCCCCCCEE
Q 002220 245 NVREESE-NGGGLVYLRDRVVSEIFQEDIKIGTPYLPDYIVERLNRMKVLTVLDDVNKV--RQLHYLACVLDQFGPGSRI 321 (951)
Q Consensus 245 ~~~~~~~-~~~~~~~l~~~il~~l~~~~~~~~~~~~~~~l~~~l~~~~~LlVlDdv~~~--~~~~~l~~~~~~~~~gs~I 321 (951)
++.+... ...++..+.+ +...+. ..-..++.-++|||+++.. ...+.|+..+......+.+
T Consensus 90 dv~eidaas~~~Vd~iR~-l~~~~~---------------~~p~~~~~KV~IIDEad~lt~~a~NaLLK~LEEpP~~~~f 153 (824)
T PRK07764 90 DVTEIDAASHGGVDDARE-LRERAF---------------FAPAESRYKIFIIDEAHMVTPQGFNALLKIVEEPPEHLKF 153 (824)
T ss_pred cEEEecccccCCHHHHHH-HHHHHH---------------hchhcCCceEEEEechhhcCHHHHHHHHHHHhCCCCCeEE
Confidence 0000000 0011111111 111100 0012345557889999744 4466677666655566666
Q ss_pred EEEeC-CchhhhhcCCCccceEEcCCCChhhhHHHHhhhhccCCCCChhHHHHHHHHHHHcCCCchH
Q 002220 322 IITTR-DKRILDDFGVCDTDIYEVNKLRFHEALVLFSNFAFKENQCPGDLLALLERVLKYANGNPLA 387 (951)
Q Consensus 322 lvTtR-~~~v~~~~~~~~~~~~~l~~L~~~~a~~Lf~~~~~~~~~~~~~~~~~~~~i~~~~~g~PLa 387 (951)
|++|. ...+...... ....|++..++.++..+++.+.+-...... ..+....|++.++|.+..
T Consensus 154 Il~tt~~~kLl~TIrS-Rc~~v~F~~l~~~~l~~~L~~il~~EGv~i--d~eal~lLa~~sgGdlR~ 217 (824)
T PRK07764 154 IFATTEPDKVIGTIRS-RTHHYPFRLVPPEVMRGYLERICAQEGVPV--EPGVLPLVIRAGGGSVRD 217 (824)
T ss_pred EEEeCChhhhhHHHHh-heeEEEeeCCCHHHHHHHHHHHHHHcCCCC--CHHHHHHHHHHcCCCHHH
Confidence 65554 3344432211 127899999999999988877653222211 124567788899998743
No 124
>PRK14970 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.00 E-value=0.00015 Score=80.63 Aligned_cols=182 Identities=14% Similarity=0.177 Sum_probs=105.2
Q ss_pred CCCCCCcccchhhHHHHHHhhccCCCCcEEEEEEecCCChhHHHHHHHHHHhhcc--------ccceeecccccchhcCC
Q 002220 182 STYSDGFVGLNSRIQKIKSLLCIGLPDFRTIGIWGMGGIGKTTLAGAVFKLISRE--------FEGKCFMPNVREESENG 253 (951)
Q Consensus 182 ~~~~~~~vGr~~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~~~~~~~~~--------f~~~~~~~~~~~~~~~~ 253 (951)
|..-++++|.+..++.+.+.+..+ .-.+.+.++|++|+||||+|+.+++.+... |...++- ... .. .
T Consensus 13 P~~~~~iig~~~~~~~l~~~i~~~-~~~~~~L~~G~~G~GKt~~a~~la~~l~~~~~~~~~~~~~~~~~~--l~~-~~-~ 87 (367)
T PRK14970 13 PQTFDDVVGQSHITNTLLNAIENN-HLAQALLFCGPRGVGKTTCARILARKINQPGYDDPNEDFSFNIFE--LDA-AS-N 87 (367)
T ss_pred CCcHHhcCCcHHHHHHHHHHHHcC-CCCeEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCCCcceEE--ecc-cc-C
Confidence 444567899999999999988643 234688899999999999999998865431 2111110 000 00 1
Q ss_pred CChHHHHHHHHHHHhcCccccCCCCChHHHHHHhcCCcEEEEEeCCCCh--HHHHHHHhccCCCCCCCEEEEEe-CCchh
Q 002220 254 GGLVYLRDRVVSEIFQEDIKIGTPYLPDYIVERLNRMKVLTVLDDVNKV--RQLHYLACVLDQFGPGSRIIITT-RDKRI 330 (951)
Q Consensus 254 ~~~~~l~~~il~~l~~~~~~~~~~~~~~~l~~~l~~~~~LlVlDdv~~~--~~~~~l~~~~~~~~~gs~IlvTt-R~~~v 330 (951)
.++..+ ..+..++... -..+++-++|+|+++.. ..++.+...+......+.+|++| ....+
T Consensus 88 ~~~~~i-~~l~~~~~~~---------------p~~~~~kiviIDE~~~l~~~~~~~ll~~le~~~~~~~~Il~~~~~~kl 151 (367)
T PRK14970 88 NSVDDI-RNLIDQVRIP---------------PQTGKYKIYIIDEVHMLSSAAFNAFLKTLEEPPAHAIFILATTEKHKI 151 (367)
T ss_pred CCHHHH-HHHHHHHhhc---------------cccCCcEEEEEeChhhcCHHHHHHHHHHHhCCCCceEEEEEeCCcccC
Confidence 111111 1122211100 01234558999998644 33666655544334455555555 33333
Q ss_pred hhhcCCCccceEEcCCCChhhhHHHHhhhhccCCCCChhHHHHHHHHHHHcCCCchH
Q 002220 331 LDDFGVCDTDIYEVNKLRFHEALVLFSNFAFKENQCPGDLLALLERVLKYANGNPLA 387 (951)
Q Consensus 331 ~~~~~~~~~~~~~l~~L~~~~a~~Lf~~~~~~~~~~~~~~~~~~~~i~~~~~g~PLa 387 (951)
..... .....++.+++++++....+...+......- ..+.+..+++.++|.+-.
T Consensus 152 ~~~l~-sr~~~v~~~~~~~~~l~~~l~~~~~~~g~~i--~~~al~~l~~~~~gdlr~ 205 (367)
T PRK14970 152 IPTIL-SRCQIFDFKRITIKDIKEHLAGIAVKEGIKF--EDDALHIIAQKADGALRD 205 (367)
T ss_pred CHHHH-hcceeEecCCccHHHHHHHHHHHHHHcCCCC--CHHHHHHHHHhCCCCHHH
Confidence 22211 0115799999999999998887764333211 125677888888886653
No 125
>KOG2982 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.00 E-value=1.9e-06 Score=85.74 Aligned_cols=185 Identities=17% Similarity=0.180 Sum_probs=119.9
Q ss_pred cceeeccccCCCCC---ccCcccccCCCCcEEecccccccccccccccCCCCCCEEeccCCCCC-CccchhcccCCCCcE
Q 002220 722 GKVVKLRLWYTPIE---EVPSSIECLTNLETLDLRLCERLKRVSTSICKLKSLGSLLLAFCSNL-EGFPEILEKMELLET 797 (951)
Q Consensus 722 ~~L~~L~l~~~~l~---~lp~~l~~l~~L~~L~Ls~~~~~~~~~~~~~~l~~L~~L~l~~~~~~-~~~~~~l~~l~~L~~ 797 (951)
..++.++|.+|.|. ++..-+.+++.|++|+|+.|.+...+...-..+.+|++|.|.+.... +..-..+..+|.+++
T Consensus 71 ~~v~elDL~~N~iSdWseI~~ile~lP~l~~LNls~N~L~s~I~~lp~p~~nl~~lVLNgT~L~w~~~~s~l~~lP~vte 150 (418)
T KOG2982|consen 71 TDVKELDLTGNLISDWSEIGAILEQLPALTTLNLSCNSLSSDIKSLPLPLKNLRVLVLNGTGLSWTQSTSSLDDLPKVTE 150 (418)
T ss_pred hhhhhhhcccchhccHHHHHHHHhcCccceEeeccCCcCCCccccCcccccceEEEEEcCCCCChhhhhhhhhcchhhhh
Confidence 35667778888776 34445678888999999887654443221134568888888765421 122334567777888
Q ss_pred EEcccCCCcccCc---ccc-CCCCCcEEeeccCCCCccCCcccCCcCCCCCCCCEEeccCCCCCCc--CccCCCCCCCCE
Q 002220 798 LDLERTGVKELPP---SFE-NLQGLRQLSLIGCSELKCSGWVLPTRISKLSSLERLQLSGCEIKEI--PEDIDCLSSLEV 871 (951)
Q Consensus 798 L~l~~n~i~~l~~---~~~-~l~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~l~~l--~~~l~~l~~L~~ 871 (951)
|+++.|++..+-. ... .-+.+++|.+..|....... ....-.-+|++..+.+..|++.+. .+....+|.+-.
T Consensus 151 lHmS~N~~rq~n~Dd~c~e~~s~~v~tlh~~~c~~~~w~~--~~~l~r~Fpnv~sv~v~e~PlK~~s~ek~se~~p~~~~ 228 (418)
T KOG2982|consen 151 LHMSDNSLRQLNLDDNCIEDWSTEVLTLHQLPCLEQLWLN--KNKLSRIFPNVNSVFVCEGPLKTESSEKGSEPFPSLSC 228 (418)
T ss_pred hhhccchhhhhccccccccccchhhhhhhcCCcHHHHHHH--HHhHHhhcccchheeeecCcccchhhcccCCCCCcchh
Confidence 8888776553211 111 11245555555554322100 011122467888999999988863 455677888999
Q ss_pred EEccCCCCcccc--hhhcCCCCCCEEeeCCCCCCCcCCC
Q 002220 872 LDLSGSKIEILP--TSIGQLSRLRQLNLLDCNMLQSIPE 908 (951)
Q Consensus 872 L~L~~n~l~~l~--~~l~~l~~L~~L~L~~~~~l~~lp~ 908 (951)
|+|+.|+|.++. +.+..+++|..|.++++|....+..
T Consensus 229 LnL~~~~idswasvD~Ln~f~~l~dlRv~~~Pl~d~l~~ 267 (418)
T KOG2982|consen 229 LNLGANNIDSWASVDALNGFPQLVDLRVSENPLSDPLRG 267 (418)
T ss_pred hhhcccccccHHHHHHHcCCchhheeeccCCcccccccC
Confidence 999999998765 6788999999999999998876653
No 126
>PHA02544 44 clamp loader, small subunit; Provisional
Probab=97.99 E-value=0.00012 Score=79.72 Aligned_cols=151 Identities=15% Similarity=0.193 Sum_probs=86.8
Q ss_pred CCCCCCcccchhhHHHHHHhhccCCCCcEEEEEEecCCChhHHHHHHHHHHhhccccceeecccccchhcCCCChHHHHH
Q 002220 182 STYSDGFVGLNSRIQKIKSLLCIGLPDFRTIGIWGMGGIGKTTLAGAVFKLISREFEGKCFMPNVREESENGGGLVYLRD 261 (951)
Q Consensus 182 ~~~~~~~vGr~~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~l~~ 261 (951)
|...++++|.+...+.+..++.. ..-..++.++|++|+||||+|+.+++.....| .++... ......+..
T Consensus 17 P~~~~~~~~~~~~~~~l~~~~~~-~~~~~~lll~G~~G~GKT~la~~l~~~~~~~~---~~i~~~------~~~~~~i~~ 86 (316)
T PHA02544 17 PSTIDECILPAADKETFKSIVKK-GRIPNMLLHSPSPGTGKTTVAKALCNEVGAEV---LFVNGS------DCRIDFVRN 86 (316)
T ss_pred CCcHHHhcCcHHHHHHHHHHHhc-CCCCeEEEeeCcCCCCHHHHHHHHHHHhCccc---eEeccC------cccHHHHHH
Confidence 44557899999999999998863 23356778899999999999999998764322 222111 111121111
Q ss_pred HHHHHHhcCccccCCCCChHHHHHHhcCCcEEEEEeCCCCh---HHHHHHHhccCCCCCCCEEEEEeCCchhh-hhcCCC
Q 002220 262 RVVSEIFQEDIKIGTPYLPDYIVERLNRMKVLTVLDDVNKV---RQLHYLACVLDQFGPGSRIIITTRDKRIL-DDFGVC 337 (951)
Q Consensus 262 ~il~~l~~~~~~~~~~~~~~~l~~~l~~~~~LlVlDdv~~~---~~~~~l~~~~~~~~~gs~IlvTtR~~~v~-~~~~~~ 337 (951)
.+ ....... .+...+-++|+|+++.. +..+.+...+.....++++|+||...... .... .
T Consensus 87 ~l-~~~~~~~--------------~~~~~~~vliiDe~d~l~~~~~~~~L~~~le~~~~~~~~Ilt~n~~~~l~~~l~-s 150 (316)
T PHA02544 87 RL-TRFASTV--------------SLTGGGKVIIIDEFDRLGLADAQRHLRSFMEAYSKNCSFIITANNKNGIIEPLR-S 150 (316)
T ss_pred HH-HHHHHhh--------------cccCCCeEEEEECcccccCHHHHHHHHHHHHhcCCCceEEEEcCChhhchHHHH-h
Confidence 11 1111000 01134557899999754 22333443344445678888888654321 1110 0
Q ss_pred ccceEEcCCCChhhhHHHHhh
Q 002220 338 DTDIYEVNKLRFHEALVLFSN 358 (951)
Q Consensus 338 ~~~~~~l~~L~~~~a~~Lf~~ 358 (951)
....+.++..+.++..+++..
T Consensus 151 R~~~i~~~~p~~~~~~~il~~ 171 (316)
T PHA02544 151 RCRVIDFGVPTKEEQIEMMKQ 171 (316)
T ss_pred hceEEEeCCCCHHHHHHHHHH
Confidence 114677777888887766554
No 127
>PRK14959 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.98 E-value=0.00012 Score=83.93 Aligned_cols=188 Identities=13% Similarity=0.098 Sum_probs=109.4
Q ss_pred CCCCCCcccchhhHHHHHHhhccCCCCcEEEEEEecCCChhHHHHHHHHHHhhccc--c-------------------ce
Q 002220 182 STYSDGFVGLNSRIQKIKSLLCIGLPDFRTIGIWGMGGIGKTTLAGAVFKLISREF--E-------------------GK 240 (951)
Q Consensus 182 ~~~~~~~vGr~~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~~~~~~~~~f--~-------------------~~ 240 (951)
|...++++|-+..++.|.+.+..+ .-...+.++|+.|+||||+|+.+++.+-... . .+
T Consensus 12 P~sf~dIiGQe~v~~~L~~ai~~~-ri~ha~Lf~GPpG~GKTtiArilAk~L~C~~~~~~~pCg~C~sC~~i~~g~hpDv 90 (624)
T PRK14959 12 PQTFAEVAGQETVKAILSRAAQEN-RVAPAYLFSGTRGVGKTTIARIFAKALNCETAPTGEPCNTCEQCRKVTQGMHVDV 90 (624)
T ss_pred CCCHHHhcCCHHHHHHHHHHHHcC-CCCceEEEECCCCCCHHHHHHHHHHhccccCCCCCCCCcccHHHHHHhcCCCCce
Confidence 344567899998888888888533 2246788999999999999999998653211 0 01
Q ss_pred eecccccchhcCCCChHHHHHHHHHHHhcCccccCCCCChHHHHHHhcCCcEEEEEeCCCCh--HHHHHHHhccCCCCCC
Q 002220 241 CFMPNVREESENGGGLVYLRDRVVSEIFQEDIKIGTPYLPDYIVERLNRMKVLTVLDDVNKV--RQLHYLACVLDQFGPG 318 (951)
Q Consensus 241 ~~~~~~~~~~~~~~~~~~l~~~il~~l~~~~~~~~~~~~~~~l~~~l~~~~~LlVlDdv~~~--~~~~~l~~~~~~~~~g 318 (951)
.++.. .. ..++..+. .+...+.. .-..+++-++|+|+++.. .....|...+......
T Consensus 91 ~eId~----a~-~~~Id~iR-~L~~~~~~---------------~p~~g~~kVIIIDEad~Lt~~a~naLLk~LEEP~~~ 149 (624)
T PRK14959 91 VEIDG----AS-NRGIDDAK-RLKEAIGY---------------APMEGRYKVFIIDEAHMLTREAFNALLKTLEEPPAR 149 (624)
T ss_pred EEEec----cc-ccCHHHHH-HHHHHHHh---------------hhhcCCceEEEEEChHhCCHHHHHHHHHHhhccCCC
Confidence 11100 00 01111111 11111100 011345678999999654 4466666665543445
Q ss_pred CEEEEEeCC-chhhhhcCCCccceEEcCCCChhhhHHHHhhhhccCCCCChhHHHHHHHHHHHcCCCc-hHHHHHhhh
Q 002220 319 SRIIITTRD-KRILDDFGVCDTDIYEVNKLRFHEALVLFSNFAFKENQCPGDLLALLERVLKYANGNP-LALRVLGSF 394 (951)
Q Consensus 319 s~IlvTtR~-~~v~~~~~~~~~~~~~l~~L~~~~a~~Lf~~~~~~~~~~~~~~~~~~~~i~~~~~g~P-Lal~~~~~~ 394 (951)
..+|++|.+ ..+..... .....+++++++.++..+.+...+....... ..+.++.|++.++|.+ .|+..+...
T Consensus 150 ~ifILaTt~~~kll~TI~-SRcq~i~F~pLs~~eL~~~L~~il~~egi~i--d~eal~lIA~~s~GdlR~Al~lLeql 224 (624)
T PRK14959 150 VTFVLATTEPHKFPVTIV-SRCQHFTFTRLSEAGLEAHLTKVLGREGVDY--DPAAVRLIARRAAGSVRDSMSLLGQV 224 (624)
T ss_pred EEEEEecCChhhhhHHHH-hhhhccccCCCCHHHHHHHHHHHHHHcCCCC--CHHHHHHHHHHcCCCHHHHHHHHHHH
Confidence 556665554 33332211 1116789999999999998887664332211 1256778888899865 566666543
No 128
>PRK14952 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.97 E-value=0.00016 Score=83.33 Aligned_cols=191 Identities=15% Similarity=0.098 Sum_probs=105.9
Q ss_pred CCCCCCcccchhhHHHHHHhhccCCCCcEEEEEEecCCChhHHHHHHHHHHhhccccceeecccccchhcCCCChHHHHH
Q 002220 182 STYSDGFVGLNSRIQKIKSLLCIGLPDFRTIGIWGMGGIGKTTLAGAVFKLISREFEGKCFMPNVREESENGGGLVYLRD 261 (951)
Q Consensus 182 ~~~~~~~vGr~~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~l~~ 261 (951)
|...+++||.+..++.|..++..+ .-.+.+.++|+.|+||||+|+.+++.+-...... .-.+. .-...+
T Consensus 9 P~~f~eivGq~~i~~~L~~~i~~~-r~~ha~Lf~Gp~G~GKTt~A~~lAk~l~c~~~~~-~~pCg---------~C~~C~ 77 (584)
T PRK14952 9 PATFAEVVGQEHVTEPLSSALDAG-RINHAYLFSGPRGCGKTSSARILARSLNCAQGPT-ATPCG---------VCESCV 77 (584)
T ss_pred CCcHHHhcCcHHHHHHHHHHHHcC-CCCeEEEEECCCCCCHHHHHHHHHHHhccccCCC-CCccc---------ccHHHH
Confidence 344568999999999999998643 2345678999999999999999998653211000 00000 000000
Q ss_pred HHHHHHhcC------cc-ccCCCCChHHHHHH-----hcCCcEEEEEeCCCC--hHHHHHHHhccCCCCCCCEEEEEe-C
Q 002220 262 RVVSEIFQE------DI-KIGTPYLPDYIVER-----LNRMKVLTVLDDVNK--VRQLHYLACVLDQFGPGSRIIITT-R 326 (951)
Q Consensus 262 ~il~~l~~~------~~-~~~~~~~~~~l~~~-----l~~~~~LlVlDdv~~--~~~~~~l~~~~~~~~~gs~IlvTt-R 326 (951)
.+...-... +. .....+....+.+. ..+++-++|+|+++. ....+.|+..+......+.+|++| .
T Consensus 78 ~i~~~~~~~~dvieidaas~~gvd~iRel~~~~~~~P~~~~~KVvIIDEah~Lt~~A~NALLK~LEEpp~~~~fIL~tte 157 (584)
T PRK14952 78 ALAPNGPGSIDVVELDAASHGGVDDTRELRDRAFYAPAQSRYRIFIVDEAHMVTTAGFNALLKIVEEPPEHLIFIFATTE 157 (584)
T ss_pred HhhcccCCCceEEEeccccccCHHHHHHHHHHHHhhhhcCCceEEEEECCCcCCHHHHHHHHHHHhcCCCCeEEEEEeCC
Confidence 000000000 00 00000000111111 124556889999963 445667776666555566666555 4
Q ss_pred CchhhhhcCCCccceEEcCCCChhhhHHHHhhhhccCCCCChhHHHHHHHHHHHcCCCch
Q 002220 327 DKRILDDFGVCDTDIYEVNKLRFHEALVLFSNFAFKENQCPGDLLALLERVLKYANGNPL 386 (951)
Q Consensus 327 ~~~v~~~~~~~~~~~~~l~~L~~~~a~~Lf~~~~~~~~~~~~~~~~~~~~i~~~~~g~PL 386 (951)
...+...... ....+++..++.++..+.+.+.+-......+ .+.+..|++..+|.+-
T Consensus 158 ~~kll~TI~S-Rc~~~~F~~l~~~~i~~~L~~i~~~egi~i~--~~al~~Ia~~s~GdlR 214 (584)
T PRK14952 158 PEKVLPTIRS-RTHHYPFRLLPPRTMRALIARICEQEGVVVD--DAVYPLVIRAGGGSPR 214 (584)
T ss_pred hHhhHHHHHH-hceEEEeeCCCHHHHHHHHHHHHHHcCCCCC--HHHHHHHHHHcCCCHH
Confidence 4444332110 1278999999999999888876643322111 2456778888888774
No 129
>PRK08451 DNA polymerase III subunits gamma and tau; Validated
Probab=97.95 E-value=0.00031 Score=79.65 Aligned_cols=188 Identities=15% Similarity=0.131 Sum_probs=108.9
Q ss_pred CCCCCCcccchhhHHHHHHhhccCCCCcEEEEEEecCCChhHHHHHHHHHHhhc-cccc--eeecc------------cc
Q 002220 182 STYSDGFVGLNSRIQKIKSLLCIGLPDFRTIGIWGMGGIGKTTLAGAVFKLISR-EFEG--KCFMP------------NV 246 (951)
Q Consensus 182 ~~~~~~~vGr~~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~~~~~~~~-~f~~--~~~~~------------~~ 246 (951)
|..-+++||-+.-.+.|...+..+ .-.++..++|+.|+||||+|+.+++.+-. .... -|..+ ++
T Consensus 10 P~~fdeiiGqe~v~~~L~~~I~~g-rl~hayLf~Gp~G~GKTt~Ar~LAk~L~c~~~~~~~pC~~C~~C~~~~~~~h~dv 88 (535)
T PRK08451 10 PKHFDELIGQESVSKTLSLALDNN-RLAHAYLFSGLRGSGKTSSARIFARALVCEQGPSSTPCDTCIQCQSALENRHIDI 88 (535)
T ss_pred CCCHHHccCcHHHHHHHHHHHHcC-CCCeeEEEECCCCCcHHHHHHHHHHHhcCCCCCCCCCCcccHHHHHHhhcCCCeE
Confidence 344567999999999999988543 23467789999999999999999986521 1100 00000 00
Q ss_pred cchhc-CCCChHHHHHHHHHHHhcCccccCCCCChHHHHHHhcCCcEEEEEeCCCCh--HHHHHHHhccCCCCCCCEEEE
Q 002220 247 REESE-NGGGLVYLRDRVVSEIFQEDIKIGTPYLPDYIVERLNRMKVLTVLDDVNKV--RQLHYLACVLDQFGPGSRIII 323 (951)
Q Consensus 247 ~~~~~-~~~~~~~l~~~il~~l~~~~~~~~~~~~~~~l~~~l~~~~~LlVlDdv~~~--~~~~~l~~~~~~~~~gs~Ilv 323 (951)
.+... ...++..+...+ ...... -..+++-++|+|+++.. +..+.++..+....+.+++|+
T Consensus 89 ~eldaas~~gId~IReli-e~~~~~---------------P~~~~~KVvIIDEad~Lt~~A~NALLK~LEEpp~~t~FIL 152 (535)
T PRK08451 89 IEMDAASNRGIDDIRELI-EQTKYK---------------PSMARFKIFIIDEVHMLTKEAFNALLKTLEEPPSYVKFIL 152 (535)
T ss_pred EEeccccccCHHHHHHHH-HHHhhC---------------cccCCeEEEEEECcccCCHHHHHHHHHHHhhcCCceEEEE
Confidence 00000 011122222111 110000 00134568899999744 446667666655556777777
Q ss_pred EeCCc-hhhhhcCCCccceEEcCCCChhhhHHHHhhhhccCCCCChhHHHHHHHHHHHcCCCchHHH
Q 002220 324 TTRDK-RILDDFGVCDTDIYEVNKLRFHEALVLFSNFAFKENQCPGDLLALLERVLKYANGNPLALR 389 (951)
Q Consensus 324 TtR~~-~v~~~~~~~~~~~~~l~~L~~~~a~~Lf~~~~~~~~~~~~~~~~~~~~i~~~~~g~PLal~ 389 (951)
+|.+. .+..... .....+++.+++.++..+.+.+.+-...... ..+.++.|++.++|.+--+.
T Consensus 153 ~ttd~~kL~~tI~-SRc~~~~F~~Ls~~ei~~~L~~Il~~EGi~i--~~~Al~~Ia~~s~GdlR~al 216 (535)
T PRK08451 153 ATTDPLKLPATIL-SRTQHFRFKQIPQNSIISHLKTILEKEGVSY--EPEALEILARSGNGSLRDTL 216 (535)
T ss_pred EECChhhCchHHH-hhceeEEcCCCCHHHHHHHHHHHHHHcCCCC--CHHHHHHHHHHcCCcHHHHH
Confidence 77654 2211111 0127899999999999998877664332211 12567788999999874443
No 130
>PRK06620 hypothetical protein; Validated
Probab=97.93 E-value=0.00014 Score=73.26 Aligned_cols=132 Identities=13% Similarity=0.054 Sum_probs=76.0
Q ss_pred EEEEEEecCCChhHHHHHHHHHHhhccccceeecccccchhcCCCChHHHHHHHHHHHhcCccccCCCCChHHHHHHhcC
Q 002220 210 RTIGIWGMGGIGKTTLAGAVFKLISREFEGKCFMPNVREESENGGGLVYLRDRVVSEIFQEDIKIGTPYLPDYIVERLNR 289 (951)
Q Consensus 210 ~vv~I~G~gGiGKTtLA~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~l~~~il~~l~~~~~~~~~~~~~~~l~~~l~~ 289 (951)
+.+.|||++|+|||+||+.+++.... .++... .. . . + ..+
T Consensus 45 ~~l~l~Gp~G~GKThLl~a~~~~~~~-----~~~~~~------~~-~----~-------------------~----~~~- 84 (214)
T PRK06620 45 FTLLIKGPSSSGKTYLTKIWQNLSNA-----YIIKDI------FF-N----E-------------------E----ILE- 84 (214)
T ss_pred ceEEEECCCCCCHHHHHHHHHhccCC-----EEcchh------hh-c----h-------------------h----HHh-
Confidence 67899999999999999998764321 222100 00 0 0 0 011
Q ss_pred CcEEEEEeCCCChHH--HHHHHhccCCCCCCCEEEEEeCCch-------hhhhcCCCccceEEcCCCChhhhHHHHhhhh
Q 002220 290 MKVLTVLDDVNKVRQ--LHYLACVLDQFGPGSRIIITTRDKR-------ILDDFGVCDTDIYEVNKLRFHEALVLFSNFA 360 (951)
Q Consensus 290 ~~~LlVlDdv~~~~~--~~~l~~~~~~~~~gs~IlvTtR~~~-------v~~~~~~~~~~~~~l~~L~~~~a~~Lf~~~~ 360 (951)
..-++++||++...+ +-.+...+. ..|..||+|++... +.+.+... -++++++++.++..+++.+.+
T Consensus 85 ~~d~lliDdi~~~~~~~lf~l~N~~~--e~g~~ilits~~~p~~l~l~~L~SRl~~g--l~~~l~~pd~~~~~~~l~k~~ 160 (214)
T PRK06620 85 KYNAFIIEDIENWQEPALLHIFNIIN--EKQKYLLLTSSDKSRNFTLPDLSSRIKSV--LSILLNSPDDELIKILIFKHF 160 (214)
T ss_pred cCCEEEEeccccchHHHHHHHHHHHH--hcCCEEEEEcCCCccccchHHHHHHHhCC--ceEeeCCCCHHHHHHHHHHHH
Confidence 234688899974432 222222222 34668999987542 22333222 579999999999888887776
Q ss_pred ccCCCCChhHHHHHHHHHHHcCCCchH
Q 002220 361 FKENQCPGDLLALLERVLKYANGNPLA 387 (951)
Q Consensus 361 ~~~~~~~~~~~~~~~~i~~~~~g~PLa 387 (951)
-..... --+++++-|++.+.|.--.
T Consensus 161 ~~~~l~--l~~ev~~~L~~~~~~d~r~ 185 (214)
T PRK06620 161 SISSVT--ISRQIIDFLLVNLPREYSK 185 (214)
T ss_pred HHcCCC--CCHHHHHHHHHHccCCHHH
Confidence 422111 1125566667666665433
No 131
>PRK07133 DNA polymerase III subunits gamma and tau; Validated
Probab=97.92 E-value=0.00019 Score=83.60 Aligned_cols=191 Identities=15% Similarity=0.116 Sum_probs=104.7
Q ss_pred CCCCCCcccchhhHHHHHHhhccCCCCcEEEEEEecCCChhHHHHHHHHHHhhccccceeecccccchh--cCCCChHHH
Q 002220 182 STYSDGFVGLNSRIQKIKSLLCIGLPDFRTIGIWGMGGIGKTTLAGAVFKLISREFEGKCFMPNVREES--ENGGGLVYL 259 (951)
Q Consensus 182 ~~~~~~~vGr~~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~~~~~~~~~f~~~~~~~~~~~~~--~~~~~~~~l 259 (951)
|.....++|.+..++.|...+..+ .-.+.+.++|+.|+||||+|+.++..+-..-....+-.+..... ....++..
T Consensus 14 P~~f~dIiGQe~~v~~L~~aI~~~-rl~HAYLF~GP~GtGKTt~AriLAk~LnC~~~~~~~~pC~~C~~~~~~~~Dvie- 91 (725)
T PRK07133 14 PKTFDDIVGQDHIVQTLKNIIKSN-KISHAYLFSGPRGTGKTSVAKIFANALNCSHKTDLLEPCQECIENVNNSLDIIE- 91 (725)
T ss_pred CCCHHHhcCcHHHHHHHHHHHHcC-CCCeEEEEECCCCCcHHHHHHHHHHHhcccccCCCCCchhHHHHhhcCCCcEEE-
Confidence 344567999999999999988643 23567789999999999999999985422111000000000000 00000000
Q ss_pred HHHHHHHHhcCccccCCCCChHHHHHHh-----cCCcEEEEEeCCCCh--HHHHHHHhccCCCCCCCEEE-EEeCCchhh
Q 002220 260 RDRVVSEIFQEDIKIGTPYLPDYIVERL-----NRMKVLTVLDDVNKV--RQLHYLACVLDQFGPGSRII-ITTRDKRIL 331 (951)
Q Consensus 260 ~~~il~~l~~~~~~~~~~~~~~~l~~~l-----~~~~~LlVlDdv~~~--~~~~~l~~~~~~~~~gs~Il-vTtR~~~v~ 331 (951)
.........+....+.+.. .+++-++|+|+++.. ..+..++..+......+.+| +|++...+.
T Consensus 92 ---------idaasn~~vd~IReLie~~~~~P~~g~~KV~IIDEa~~LT~~A~NALLKtLEEPP~~tifILaTte~~KLl 162 (725)
T PRK07133 92 ---------MDAASNNGVDEIRELIENVKNLPTQSKYKIYIIDEVHMLSKSAFNALLKTLEEPPKHVIFILATTEVHKIP 162 (725)
T ss_pred ---------EeccccCCHHHHHHHHHHHHhchhcCCCEEEEEEChhhCCHHHHHHHHHHhhcCCCceEEEEEcCChhhhh
Confidence 0000000000001121211 245668899999643 45666766665544555555 444444443
Q ss_pred hhcCCCccceEEcCCCChhhhHHHHhhhhccCCCCChhHHHHHHHHHHHcCCCch
Q 002220 332 DDFGVCDTDIYEVNKLRFHEALVLFSNFAFKENQCPGDLLALLERVLKYANGNPL 386 (951)
Q Consensus 332 ~~~~~~~~~~~~l~~L~~~~a~~Lf~~~~~~~~~~~~~~~~~~~~i~~~~~g~PL 386 (951)
.... .....+++.+++.++..+.+...+-...... ..+.++.+++.++|.+-
T Consensus 163 ~TI~-SRcq~ieF~~L~~eeI~~~L~~il~kegI~i--d~eAl~~LA~lS~GslR 214 (725)
T PRK07133 163 LTIL-SRVQRFNFRRISEDEIVSRLEFILEKENISY--EKNALKLIAKLSSGSLR 214 (725)
T ss_pred HHHH-hhceeEEccCCCHHHHHHHHHHHHHHcCCCC--CHHHHHHHHHHcCCCHH
Confidence 3211 1126899999999999988887653222111 12457788899988764
No 132
>TIGR02903 spore_lon_C ATP-dependent protease, Lon family. Members of this protein family resemble the widely distributed ATP-dependent protease La, also called Lon and LonA. It resembles even more closely LonB, which is a LonA paralog found in genomes if and only if the species is capable of endospore formation (as in Bacillus subtilis, Clostridium tetani, and select other members of the Firmicutes) and expressed specifically in the forespore compartment. Members of this family are restricted to a subset of spore-forming species, and are very likely to participate in the program of endospore formation. We propose the designation LonC.
Probab=97.92 E-value=6.6e-05 Score=87.97 Aligned_cols=50 Identities=24% Similarity=0.284 Sum_probs=40.2
Q ss_pred CCCCCCcccchhhHHHHHHhhccCCCCcEEEEEEecCCChhHHHHHHHHHHh
Q 002220 182 STYSDGFVGLNSRIQKIKSLLCIGLPDFRTIGIWGMGGIGKTTLAGAVFKLI 233 (951)
Q Consensus 182 ~~~~~~~vGr~~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~~~~~~ 233 (951)
|...+.++|++..+..+.+.+.. .....+.|+|++|+||||+|+.+++..
T Consensus 150 p~~~~~iiGqs~~~~~l~~~ia~--~~~~~vlL~Gp~GtGKTTLAr~i~~~~ 199 (615)
T TIGR02903 150 PRAFSEIVGQERAIKALLAKVAS--PFPQHIILYGPPGVGKTTAARLALEEA 199 (615)
T ss_pred cCcHHhceeCcHHHHHHHHHHhc--CCCCeEEEECCCCCCHHHHHHHHHHhh
Confidence 34456799999999988877743 334679999999999999999998754
No 133
>PRK14950 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.91 E-value=0.00019 Score=84.11 Aligned_cols=196 Identities=15% Similarity=0.147 Sum_probs=109.1
Q ss_pred CCCCCCcccchhhHHHHHHhhccCCCCcEEEEEEecCCChhHHHHHHHHHHhhccccceeecccccchhcCCCChHHHHH
Q 002220 182 STYSDGFVGLNSRIQKIKSLLCIGLPDFRTIGIWGMGGIGKTTLAGAVFKLISREFEGKCFMPNVREESENGGGLVYLRD 261 (951)
Q Consensus 182 ~~~~~~~vGr~~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~l~~ 261 (951)
|...+++||.+.-++.|..++..+. -...+.++|..|+||||+|+.+++.+.......-+- ..+.-...+
T Consensus 12 P~~~~eiiGq~~~~~~L~~~i~~~~-i~~a~Lf~Gp~G~GKTtlA~~lA~~l~c~~~~~~~~---------~c~~c~~c~ 81 (585)
T PRK14950 12 SQTFAELVGQEHVVQTLRNAIAEGR-VAHAYLFTGPRGVGKTSTARILAKAVNCTTNDPKGR---------PCGTCEMCR 81 (585)
T ss_pred CCCHHHhcCCHHHHHHHHHHHHhCC-CceEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCC---------CCccCHHHH
Confidence 3445689999999999998886432 345678999999999999999998653211100000 000011111
Q ss_pred HHHHHHhcCccccCC-CCC-hHHH---HHHh-----cCCcEEEEEeCCCCh--HHHHHHHhccCCCCCCCEEEEEeCC-c
Q 002220 262 RVVSEIFQEDIKIGT-PYL-PDYI---VERL-----NRMKVLTVLDDVNKV--RQLHYLACVLDQFGPGSRIIITTRD-K 328 (951)
Q Consensus 262 ~il~~l~~~~~~~~~-~~~-~~~l---~~~l-----~~~~~LlVlDdv~~~--~~~~~l~~~~~~~~~gs~IlvTtR~-~ 328 (951)
.+.......-..... ... .+.+ .+.+ .+++-++|+|+++.. ...+.+...+......+.+|++|.+ .
T Consensus 82 ~i~~~~~~d~~~i~~~~~~~vd~ir~ii~~~~~~p~~~~~kVvIIDEa~~L~~~a~naLLk~LEepp~~tv~Il~t~~~~ 161 (585)
T PRK14950 82 AIAEGSAVDVIEMDAASHTSVDDAREIIERVQFRPALARYKVYIIDEVHMLSTAAFNALLKTLEEPPPHAIFILATTEVH 161 (585)
T ss_pred HHhcCCCCeEEEEeccccCCHHHHHHHHHHHhhCcccCCeEEEEEeChHhCCHHHHHHHHHHHhcCCCCeEEEEEeCChh
Confidence 111110000000000 000 0111 1111 245668999999644 4466666665554456666666543 3
Q ss_pred hhhhhcCCCccceEEcCCCChhhhHHHHhhhhccCCCCChhHHHHHHHHHHHcCCCchHHHH
Q 002220 329 RILDDFGVCDTDIYEVNKLRFHEALVLFSNFAFKENQCPGDLLALLERVLKYANGNPLALRV 390 (951)
Q Consensus 329 ~v~~~~~~~~~~~~~l~~L~~~~a~~Lf~~~~~~~~~~~~~~~~~~~~i~~~~~g~PLal~~ 390 (951)
.+..... .....+++..++.++....+.+.+....... ..+.+..+++.++|.+..+..
T Consensus 162 kll~tI~-SR~~~i~f~~l~~~el~~~L~~~a~~egl~i--~~eal~~La~~s~Gdlr~al~ 220 (585)
T PRK14950 162 KVPATIL-SRCQRFDFHRHSVADMAAHLRKIAAAEGINL--EPGALEAIARAATGSMRDAEN 220 (585)
T ss_pred hhhHHHH-hccceeeCCCCCHHHHHHHHHHHHHHcCCCC--CHHHHHHHHHHcCCCHHHHHH
Confidence 3332211 1126789999999999988887764332211 125677889999998865443
No 134
>KOG0989 consensus Replication factor C, subunit RFC4 [Replication, recombination and repair]
Probab=97.90 E-value=0.00014 Score=73.59 Aligned_cols=183 Identities=19% Similarity=0.241 Sum_probs=111.1
Q ss_pred CCCCCCcccchhhHHHHHHhhccCCCCcEEEEEEecCCChhHHHHHHHHHHhh--ccccceeecccccchhcCCCChHHH
Q 002220 182 STYSDGFVGLNSRIQKIKSLLCIGLPDFRTIGIWGMGGIGKTTLAGAVFKLIS--REFEGKCFMPNVREESENGGGLVYL 259 (951)
Q Consensus 182 ~~~~~~~vGr~~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~~~~~~~--~~f~~~~~~~~~~~~~~~~~~~~~l 259 (951)
|...++++|-+..+..|.+.+.. ........+|++|.|||+-|..++..+- +-|+.++--.++.. ..++.-.
T Consensus 32 Pkt~de~~gQe~vV~~L~~a~~~--~~lp~~LFyGPpGTGKTStalafar~L~~~~~~~~rvl~lnaSd----erGisvv 105 (346)
T KOG0989|consen 32 PKTFDELAGQEHVVQVLKNALLR--RILPHYLFYGPPGTGKTSTALAFARALNCEQLFPCRVLELNASD----ERGISVV 105 (346)
T ss_pred CCcHHhhcchHHHHHHHHHHHhh--cCCceEEeeCCCCCcHhHHHHHHHHHhcCccccccchhhhcccc----cccccch
Confidence 44457899999999999988854 5677889999999999999999998542 34555443322221 1122211
Q ss_pred HHHH--HHHHhcCcc-ccCCCCChHHHHHHhcCCc-EEEEEeCCCCh--HHHHHHHhccCCCCCCCEEEEEeCCc-hhhh
Q 002220 260 RDRV--VSEIFQEDI-KIGTPYLPDYIVERLNRMK-VLTVLDDVNKV--RQLHYLACVLDQFGPGSRIIITTRDK-RILD 332 (951)
Q Consensus 260 ~~~i--l~~l~~~~~-~~~~~~~~~~l~~~l~~~~-~LlVlDdv~~~--~~~~~l~~~~~~~~~gs~IlvTtR~~-~v~~ 332 (951)
...+ .+++..... .... .-.+ -.+|||+++.. +.|..+......+...++.+..+..- .+..
T Consensus 106 r~Kik~fakl~~~~~~~~~~-----------~~~~fKiiIlDEcdsmtsdaq~aLrr~mE~~s~~trFiLIcnylsrii~ 174 (346)
T KOG0989|consen 106 REKIKNFAKLTVLLKRSDGY-----------PCPPFKIIILDECDSMTSDAQAALRRTMEDFSRTTRFILICNYLSRIIR 174 (346)
T ss_pred hhhhcCHHHHhhccccccCC-----------CCCcceEEEEechhhhhHHHHHHHHHHHhccccceEEEEEcCChhhCCh
Confidence 1111 111111110 0000 0123 47889999755 45888887777666667655444332 2211
Q ss_pred hcCCCccceEEcCCCChhhhHHHHhhhhccCCCCChhHHHHHHHHHHHcCCC
Q 002220 333 DFGVCDTDIYEVNKLRFHEALVLFSNFAFKENQCPGDLLALLERVLKYANGN 384 (951)
Q Consensus 333 ~~~~~~~~~~~l~~L~~~~a~~Lf~~~~~~~~~~~~~~~~~~~~i~~~~~g~ 384 (951)
-. ......|..++|.+++..+-+...+-.+....+ .+..+.|++.++|.
T Consensus 175 pi-~SRC~KfrFk~L~d~~iv~rL~~Ia~~E~v~~d--~~al~~I~~~S~Gd 223 (346)
T KOG0989|consen 175 PL-VSRCQKFRFKKLKDEDIVDRLEKIASKEGVDID--DDALKLIAKISDGD 223 (346)
T ss_pred HH-HhhHHHhcCCCcchHHHHHHHHHHHHHhCCCCC--HHHHHHHHHHcCCc
Confidence 11 011156899999999999988888855443332 25678889998885
No 135
>PRK06305 DNA polymerase III subunits gamma and tau; Validated
Probab=97.89 E-value=0.00022 Score=80.45 Aligned_cols=185 Identities=15% Similarity=0.174 Sum_probs=104.0
Q ss_pred CCCCCCcccchhhHHHHHHhhccCCCCcEEEEEEecCCChhHHHHHHHHHHhhccc---cc-eeecc------------c
Q 002220 182 STYSDGFVGLNSRIQKIKSLLCIGLPDFRTIGIWGMGGIGKTTLAGAVFKLISREF---EG-KCFMP------------N 245 (951)
Q Consensus 182 ~~~~~~~vGr~~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~~~~~~~~~f---~~-~~~~~------------~ 245 (951)
|...++++|.+..++.|...+..+. -.+.+.++|+.|+||||+|+.+++.+-..- +. .|-.+ +
T Consensus 13 P~~~~diiGq~~~v~~L~~~i~~~~-i~ha~Lf~Gp~G~GKtt~A~~lAk~l~c~~~~~~~~~c~~c~~C~~i~~~~~~d 91 (451)
T PRK06305 13 PQTFSEILGQDAVVAVLKNALRFNR-AAHAYLFSGIRGTGKTTLARIFAKALNCQNPTEDQEPCNQCASCKEISSGTSLD 91 (451)
T ss_pred CCCHHHhcCcHHHHHHHHHHHHcCC-CceEEEEEcCCCCCHHHHHHHHHHHhcCCCcccCCCCCcccHHHHHHhcCCCCc
Confidence 3445789999999999999885432 246788999999999999999998653210 00 00000 0
Q ss_pred ccchhc-CCCChHHHHHHHHHHHhcCccccCCCCChHHHHHHhcCCcEEEEEeCCCCh--HHHHHHHhccCCCCCCCEEE
Q 002220 246 VREESE-NGGGLVYLRDRVVSEIFQEDIKIGTPYLPDYIVERLNRMKVLTVLDDVNKV--RQLHYLACVLDQFGPGSRII 322 (951)
Q Consensus 246 ~~~~~~-~~~~~~~l~~~il~~l~~~~~~~~~~~~~~~l~~~l~~~~~LlVlDdv~~~--~~~~~l~~~~~~~~~gs~Il 322 (951)
+..... ...++..+. .+...+. .....+++-++|+|+++.. ...+.+...+......+.+|
T Consensus 92 ~~~i~g~~~~gid~ir-~i~~~l~---------------~~~~~~~~kvvIIdead~lt~~~~n~LLk~lEep~~~~~~I 155 (451)
T PRK06305 92 VLEIDGASHRGIEDIR-QINETVL---------------FTPSKSRYKIYIIDEVHMLTKEAFNSLLKTLEEPPQHVKFF 155 (451)
T ss_pred eEEeeccccCCHHHHH-HHHHHHH---------------hhhhcCCCEEEEEecHHhhCHHHHHHHHHHhhcCCCCceEE
Confidence 000000 001111111 1111100 0001245678899998644 34555665555444566666
Q ss_pred EEeCC-chhhhhcCCCccceEEcCCCChhhhHHHHhhhhccCCCCChhHHHHHHHHHHHcCCCch
Q 002220 323 ITTRD-KRILDDFGVCDTDIYEVNKLRFHEALVLFSNFAFKENQCPGDLLALLERVLKYANGNPL 386 (951)
Q Consensus 323 vTtR~-~~v~~~~~~~~~~~~~l~~L~~~~a~~Lf~~~~~~~~~~~~~~~~~~~~i~~~~~g~PL 386 (951)
++|.. ..+..... .....+++.++++++..+.+.+.+-..... -..+.++.+++.++|.+-
T Consensus 156 l~t~~~~kl~~tI~-sRc~~v~f~~l~~~el~~~L~~~~~~eg~~--i~~~al~~L~~~s~gdlr 217 (451)
T PRK06305 156 LATTEIHKIPGTIL-SRCQKMHLKRIPEETIIDKLALIAKQEGIE--TSREALLPIARAAQGSLR 217 (451)
T ss_pred EEeCChHhcchHHH-HhceEEeCCCCCHHHHHHHHHHHHHHcCCC--CCHHHHHHHHHHcCCCHH
Confidence 66643 33322111 011679999999999998888765332211 122567788899998764
No 136
>PRK14953 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.88 E-value=0.00053 Score=77.83 Aligned_cols=183 Identities=13% Similarity=0.100 Sum_probs=104.7
Q ss_pred CCCCCCcccchhhHHHHHHhhccCCCCcEEEEEEecCCChhHHHHHHHHHHhhcc---c--cceeecc----------cc
Q 002220 182 STYSDGFVGLNSRIQKIKSLLCIGLPDFRTIGIWGMGGIGKTTLAGAVFKLISRE---F--EGKCFMP----------NV 246 (951)
Q Consensus 182 ~~~~~~~vGr~~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~~~~~~~~~---f--~~~~~~~----------~~ 246 (951)
|.....++|-+.-++.|...+..+ .-.+.+.++|+.|+||||+|+.++..+-.. . ++..-.. ++
T Consensus 12 P~~f~diiGq~~i~~~L~~~i~~~-~i~hayLf~Gp~G~GKTtlAr~lAk~L~c~~~~~~~pc~~c~nc~~i~~g~~~d~ 90 (486)
T PRK14953 12 PKFFKEVIGQEIVVRILKNAVKLQ-RVSHAYIFAGPRGTGKTTIARILAKVLNCLNPQEGEPCGKCENCVEIDKGSFPDL 90 (486)
T ss_pred CCcHHHccChHHHHHHHHHHHHcC-CCCeEEEEECCCCCCHHHHHHHHHHHhcCcCCCCCCCCCccHHHHHHhcCCCCcE
Confidence 344567899999999999998643 234567889999999999999999865311 0 0000000 00
Q ss_pred cchhc-CCCChHHHHHHHHHHHhcCccccCCCCChHHHHHHh-----cCCcEEEEEeCCCCh--HHHHHHHhccCCCCCC
Q 002220 247 REESE-NGGGLVYLRDRVVSEIFQEDIKIGTPYLPDYIVERL-----NRMKVLTVLDDVNKV--RQLHYLACVLDQFGPG 318 (951)
Q Consensus 247 ~~~~~-~~~~~~~l~~~il~~l~~~~~~~~~~~~~~~l~~~l-----~~~~~LlVlDdv~~~--~~~~~l~~~~~~~~~g 318 (951)
.+... ...++..+ ..+.+.. .+++-++|+|+++.. ...+.+...+....+.
T Consensus 91 ~eidaas~~gvd~i---------------------r~I~~~~~~~P~~~~~KVvIIDEad~Lt~~a~naLLk~LEepp~~ 149 (486)
T PRK14953 91 IEIDAASNRGIDDI---------------------RALRDAVSYTPIKGKYKVYIIDEAHMLTKEAFNALLKTLEEPPPR 149 (486)
T ss_pred EEEeCccCCCHHHH---------------------HHHHHHHHhCcccCCeeEEEEEChhhcCHHHHHHHHHHHhcCCCC
Confidence 00000 00111111 1222221 245679999998744 3456666665554455
Q ss_pred CEEEEEe-CCchhhhhcCCCccceEEcCCCChhhhHHHHhhhhccCCCCChhHHHHHHHHHHHcCCCchHHH
Q 002220 319 SRIIITT-RDKRILDDFGVCDTDIYEVNKLRFHEALVLFSNFAFKENQCPGDLLALLERVLKYANGNPLALR 389 (951)
Q Consensus 319 s~IlvTt-R~~~v~~~~~~~~~~~~~l~~L~~~~a~~Lf~~~~~~~~~~~~~~~~~~~~i~~~~~g~PLal~ 389 (951)
..+|++| +...+..... .....+.+.+++.++....+.+.+-...... ..+.+..+++.++|.+..+.
T Consensus 150 ~v~Il~tt~~~kl~~tI~-SRc~~i~f~~ls~~el~~~L~~i~k~egi~i--d~~al~~La~~s~G~lr~al 218 (486)
T PRK14953 150 TIFILCTTEYDKIPPTIL-SRCQRFIFSKPTKEQIKEYLKRICNEEKIEY--EEKALDLLAQASEGGMRDAA 218 (486)
T ss_pred eEEEEEECCHHHHHHHHH-HhceEEEcCCCCHHHHHHHHHHHHHHcCCCC--CHHHHHHHHHHcCCCHHHHH
Confidence 5555555 4333322211 0116799999999999988887663322111 12456778888998765443
No 137
>PRK14088 dnaA chromosomal replication initiation protein; Provisional
Probab=97.88 E-value=0.00033 Score=78.93 Aligned_cols=157 Identities=14% Similarity=0.165 Sum_probs=90.7
Q ss_pred cEEEEEEecCCChhHHHHHHHHHHhhcccc--ceeecccccchhcCCCChHHHHHHHHHHHhcCccccCCCCChHHHHHH
Q 002220 209 FRTIGIWGMGGIGKTTLAGAVFKLISREFE--GKCFMPNVREESENGGGLVYLRDRVVSEIFQEDIKIGTPYLPDYIVER 286 (951)
Q Consensus 209 ~~vv~I~G~gGiGKTtLA~~~~~~~~~~f~--~~~~~~~~~~~~~~~~~~~~l~~~il~~l~~~~~~~~~~~~~~~l~~~ 286 (951)
..-+.|+|.+|+|||+||+++++.+...++ .++|+. ...+...+...+... ....+++.
T Consensus 130 ~n~l~lyG~~G~GKTHLl~ai~~~l~~~~~~~~v~yi~-----------~~~f~~~~~~~~~~~--------~~~~f~~~ 190 (440)
T PRK14088 130 YNPLFIYGGVGLGKTHLLQSIGNYVVQNEPDLRVMYIT-----------SEKFLNDLVDSMKEG--------KLNEFREK 190 (440)
T ss_pred CCeEEEEcCCCCcHHHHHHHHHHHHHHhCCCCeEEEEE-----------HHHHHHHHHHHHhcc--------cHHHHHHH
Confidence 445899999999999999999998766543 244543 112333333333211 11334444
Q ss_pred hcCCcEEEEEeCCCCh---HHH-HHHHhccCC-CCCCCEEEEEeC-Cchh--------hhhcCCCccceEEcCCCChhhh
Q 002220 287 LNRMKVLTVLDDVNKV---RQL-HYLACVLDQ-FGPGSRIIITTR-DKRI--------LDDFGVCDTDIYEVNKLRFHEA 352 (951)
Q Consensus 287 l~~~~~LlVlDdv~~~---~~~-~~l~~~~~~-~~~gs~IlvTtR-~~~v--------~~~~~~~~~~~~~l~~L~~~~a 352 (951)
.+.+.-+|++||+... ... +.+...+.. ...|..||+||. .+.- .+.+... .++++++.+.+.-
T Consensus 191 ~~~~~dvLlIDDi~~l~~~~~~q~elf~~~n~l~~~~k~iIitsd~~p~~l~~l~~rL~SR~~~g--l~v~i~~pd~e~r 268 (440)
T PRK14088 191 YRKKVDVLLIDDVQFLIGKTGVQTELFHTFNELHDSGKQIVICSDREPQKLSEFQDRLVSRFQMG--LVAKLEPPDEETR 268 (440)
T ss_pred HHhcCCEEEEechhhhcCcHHHHHHHHHHHHHHHHcCCeEEEECCCCHHHHHHHHHHHhhHHhcC--ceEeeCCCCHHHH
Confidence 4444568999999633 111 222222111 123457888874 3322 1222222 5789999999999
Q ss_pred HHHHhhhhccCCCCChhHHHHHHHHHHHcCCCchHH
Q 002220 353 LVLFSNFAFKENQCPGDLLALLERVLKYANGNPLAL 388 (951)
Q Consensus 353 ~~Lf~~~~~~~~~~~~~~~~~~~~i~~~~~g~PLal 388 (951)
.+++.+.+......- -++++..|++.+.|..-.+
T Consensus 269 ~~IL~~~~~~~~~~l--~~ev~~~Ia~~~~~~~R~L 302 (440)
T PRK14088 269 KKIARKMLEIEHGEL--PEEVLNFVAENVDDNLRRL 302 (440)
T ss_pred HHHHHHHHHhcCCCC--CHHHHHHHHhccccCHHHH
Confidence 999988874322211 1256777787777764433
No 138
>KOG2982 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.88 E-value=4.7e-06 Score=83.08 Aligned_cols=101 Identities=12% Similarity=0.048 Sum_probs=60.4
Q ss_pred ceEEEeecCCCCCCCCcc----ccccceecccCCcccccccc---ccccccccceeccCCCCCCCcCCCC-CCCCCCcEE
Q 002220 588 LRYLYWHEYPLKTLPLDF----DLENLIALHLPYSEVEQIWK---GQKEAFKLKFIDLHDSHNLTSIPEP-LEAPNLERI 659 (951)
Q Consensus 588 L~~L~l~~~~l~~lp~~~----~l~~L~~L~L~~~~i~~l~~---~~~~l~~L~~L~L~~~~~~~~~~~~-~~l~~L~~L 659 (951)
+..|.+.++.+...-..- ..+.++.++|.+|.|....+ -..++|+|++|+|+.|.+...+... ....+|+.|
T Consensus 47 ~ellvln~~~id~~gd~~~~~~~~~~v~elDL~~N~iSdWseI~~ile~lP~l~~LNls~N~L~s~I~~lp~p~~nl~~l 126 (418)
T KOG2982|consen 47 LELLVLNGSIIDNEGDVMLFGSSVTDVKELDLTGNLISDWSEIGAILEQLPALTTLNLSCNSLSSDIKSLPLPLKNLRVL 126 (418)
T ss_pred hhhheecCCCCCcchhHHHHHHHhhhhhhhhcccchhccHHHHHHHHhcCccceEeeccCCcCCCccccCcccccceEEE
Confidence 345555666555443321 56778888888888874332 2577888888888888765444433 355677777
Q ss_pred ecCCCCC-CCccCcccccCCcccEEeccCC
Q 002220 660 NLCNCTN-LSYIPLYVQNFHNLGSLSLKGC 688 (951)
Q Consensus 660 ~L~~~~~-~~~~~~~~~~l~~L~~L~L~~~ 688 (951)
-|.+... -+.....+..++.++.|.++.|
T Consensus 127 VLNgT~L~w~~~~s~l~~lP~vtelHmS~N 156 (418)
T KOG2982|consen 127 VLNGTGLSWTQSTSSLDDLPKVTELHMSDN 156 (418)
T ss_pred EEcCCCCChhhhhhhhhcchhhhhhhhccc
Confidence 7765321 1223334455666666666553
No 139
>TIGR00362 DnaA chromosomal replication initiator protein DnaA. DnaA is involved in DNA biosynthesis; initiation of chromosome replication and can also be transcription regulator. The C-terminal of the family hits the pfam bacterial DnaA (bac_dnaA) domain family. For a review, see Kaguni (2006).
Probab=97.88 E-value=0.00031 Score=79.03 Aligned_cols=156 Identities=17% Similarity=0.201 Sum_probs=89.3
Q ss_pred cEEEEEEecCCChhHHHHHHHHHHhhcccc--ceeecccccchhcCCCChHHHHHHHHHHHhcCccccCCCCChHHHHHH
Q 002220 209 FRTIGIWGMGGIGKTTLAGAVFKLISREFE--GKCFMPNVREESENGGGLVYLRDRVVSEIFQEDIKIGTPYLPDYIVER 286 (951)
Q Consensus 209 ~~vv~I~G~gGiGKTtLA~~~~~~~~~~f~--~~~~~~~~~~~~~~~~~~~~l~~~il~~l~~~~~~~~~~~~~~~l~~~ 286 (951)
...+.|+|.+|+|||+||+++++.+..+.. .++|+. ...+...+...+... ..+.+.+.
T Consensus 136 ~n~l~l~G~~G~GKThL~~ai~~~l~~~~~~~~v~yi~-----------~~~~~~~~~~~~~~~--------~~~~~~~~ 196 (405)
T TIGR00362 136 YNPLFIYGGVGLGKTHLLHAIGNEILENNPNAKVVYVS-----------SEKFTNDFVNALRNN--------KMEEFKEK 196 (405)
T ss_pred CCeEEEECCCCCcHHHHHHHHHHHHHHhCCCCcEEEEE-----------HHHHHHHHHHHHHcC--------CHHHHHHH
Confidence 356889999999999999999998766542 234442 112223333333211 12344444
Q ss_pred hcCCcEEEEEeCCCChH---H-HHHHHhccCC-CCCCCEEEEEeCCc-h--------hhhhcCCCccceEEcCCCChhhh
Q 002220 287 LNRMKVLTVLDDVNKVR---Q-LHYLACVLDQ-FGPGSRIIITTRDK-R--------ILDDFGVCDTDIYEVNKLRFHEA 352 (951)
Q Consensus 287 l~~~~~LlVlDdv~~~~---~-~~~l~~~~~~-~~~gs~IlvTtR~~-~--------v~~~~~~~~~~~~~l~~L~~~~a 352 (951)
+++ .-+|||||++... . .+.+...+.. ...|..+|+|+... . +...+.. ...+++++.+.++-
T Consensus 197 ~~~-~dlLiiDDi~~l~~~~~~~~~l~~~~n~~~~~~~~iiits~~~p~~l~~l~~~l~SRl~~--g~~v~i~~pd~~~r 273 (405)
T TIGR00362 197 YRS-VDLLLIDDIQFLAGKERTQEEFFHTFNALHENGKQIVLTSDRPPKELPGLEERLRSRFEW--GLVVDIEPPDLETR 273 (405)
T ss_pred HHh-CCEEEEehhhhhcCCHHHHHHHHHHHHHHHHCCCCEEEecCCCHHHHhhhhhhhhhhccC--CeEEEeCCCCHHHH
Confidence 443 3478899996421 1 1223222211 12355678877642 2 1222222 15789999999999
Q ss_pred HHHHhhhhccCCCCChhHHHHHHHHHHHcCCCchHH
Q 002220 353 LVLFSNFAFKENQCPGDLLALLERVLKYANGNPLAL 388 (951)
Q Consensus 353 ~~Lf~~~~~~~~~~~~~~~~~~~~i~~~~~g~PLal 388 (951)
.+++.+.+-.....- -+++...|++.+.|..-.+
T Consensus 274 ~~il~~~~~~~~~~l--~~e~l~~ia~~~~~~~r~l 307 (405)
T TIGR00362 274 LAILQKKAEEEGLEL--PDEVLEFIAKNIRSNVREL 307 (405)
T ss_pred HHHHHHHHHHcCCCC--CHHHHHHHHHhcCCCHHHH
Confidence 999988874322211 1356677777777765543
No 140
>PRK14954 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.88 E-value=8.6e-05 Score=86.03 Aligned_cols=197 Identities=14% Similarity=0.122 Sum_probs=105.8
Q ss_pred CCCCCCcccchhhHHHHHHhhccCCCCcEEEEEEecCCChhHHHHHHHHHHhhcc--ccceeecccccchhcCCCChHHH
Q 002220 182 STYSDGFVGLNSRIQKIKSLLCIGLPDFRTIGIWGMGGIGKTTLAGAVFKLISRE--FEGKCFMPNVREESENGGGLVYL 259 (951)
Q Consensus 182 ~~~~~~~vGr~~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~~~~~~~~~--f~~~~~~~~~~~~~~~~~~~~~l 259 (951)
|....++||-+..++.|.+.+..+ .-...+.++|+.|+||||+|+.+++.+-.. ...-.|...+.+ ..+.-..
T Consensus 12 P~~f~eivGQe~i~~~L~~~i~~~-ri~ha~Lf~Gp~GvGKttlA~~lAk~L~c~~~~~~~~~~~~~~~----~Cg~C~s 86 (620)
T PRK14954 12 PSKFADITAQEHITHTIQNSLRMD-RVGHGYIFSGLRGVGKTTAARVFAKAVNCQRMIDDPVYLQEVTE----PCGECES 86 (620)
T ss_pred CCCHHHhcCcHHHHHHHHHHHHcC-CCCeeEEEECCCCCCHHHHHHHHHHHhCCCCcCCccccccccCC----CCccCHH
Confidence 444578999999999999988532 234568899999999999999999865321 110011110000 0000000
Q ss_pred HHHHHHHHhcCcccc-CCCCC-hHHHH---HHh-----cCCcEEEEEeCCCCh--HHHHHHHhccCCCCCCCEEEEEe-C
Q 002220 260 RDRVVSEIFQEDIKI-GTPYL-PDYIV---ERL-----NRMKVLTVLDDVNKV--RQLHYLACVLDQFGPGSRIIITT-R 326 (951)
Q Consensus 260 ~~~il~~l~~~~~~~-~~~~~-~~~l~---~~l-----~~~~~LlVlDdv~~~--~~~~~l~~~~~~~~~gs~IlvTt-R 326 (951)
.+.+.......-... ..... .+.++ +.+ .+++-++|+|+++.. ...+.+...+....+.+.+|++| +
T Consensus 87 C~~~~~g~~~n~~~~d~~s~~~vd~Ir~l~e~~~~~P~~~~~KVvIIdEad~Lt~~a~naLLK~LEePp~~tv~IL~t~~ 166 (620)
T PRK14954 87 CRDFDAGTSLNISEFDAASNNSVDDIRQLRENVRYGPQKGRYRVYIIDEVHMLSTAAFNAFLKTLEEPPPHAIFIFATTE 166 (620)
T ss_pred HHHHhccCCCCeEEecccccCCHHHHHHHHHHHHhhhhcCCCEEEEEeChhhcCHHHHHHHHHHHhCCCCCeEEEEEeCC
Confidence 000100000000000 00000 01221 111 244557899999754 34666776666544556555544 4
Q ss_pred CchhhhhcCCCccceEEcCCCChhhhHHHHhhhhccCCCCChhHHHHHHHHHHHcCCCch
Q 002220 327 DKRILDDFGVCDTDIYEVNKLRFHEALVLFSNFAFKENQCPGDLLALLERVLKYANGNPL 386 (951)
Q Consensus 327 ~~~v~~~~~~~~~~~~~l~~L~~~~a~~Lf~~~~~~~~~~~~~~~~~~~~i~~~~~g~PL 386 (951)
...+..... .....+++.+++.++....+.+.+-...... ..+.++.+++.++|..-
T Consensus 167 ~~kLl~TI~-SRc~~vef~~l~~~ei~~~L~~i~~~egi~I--~~eal~~La~~s~Gdlr 223 (620)
T PRK14954 167 LHKIPATIA-SRCQRFNFKRIPLDEIQSQLQMICRAEGIQI--DADALQLIARKAQGSMR 223 (620)
T ss_pred hhhhhHHHH-hhceEEecCCCCHHHHHHHHHHHHHHcCCCC--CHHHHHHHHHHhCCCHH
Confidence 344433211 1127899999999999888877653222111 12567788999999654
No 141
>TIGR03689 pup_AAA proteasome ATPase. In the Actinobacteria, as shown for Mycobacterium tuberculosis, some proteins are modified by ligation between an epsilon-amino group of a lysine side chain and the C-terminal carboxylate of the ubiquitin-like protein Pup. This modification leads to protein degradation by the archaeal-like proteasome found in the Actinobacteria. Members of this protein family belong to the AAA family of ATPases and tend to be clustered with the genes for Pup, the Pup ligase PafA, and structural components of the proteasome. This protein forms hexameric rings with ATPase activity.
Probab=97.88 E-value=0.00026 Score=79.83 Aligned_cols=158 Identities=17% Similarity=0.238 Sum_probs=88.7
Q ss_pred CCCCcccchhhHHHHHHhhcc-----------CCCCcEEEEEEecCCChhHHHHHHHHHHhhcccc-----ceeeccccc
Q 002220 184 YSDGFVGLNSRIQKIKSLLCI-----------GLPDFRTIGIWGMGGIGKTTLAGAVFKLISREFE-----GKCFMPNVR 247 (951)
Q Consensus 184 ~~~~~vGr~~~~~~l~~~L~~-----------~~~~~~vv~I~G~gGiGKTtLA~~~~~~~~~~f~-----~~~~~~~~~ 247 (951)
.-.++.|.+..++++.+.+.. +-...+-+.++|++|+|||++|+++++.+...+. ...|+. +.
T Consensus 180 ~~~dIgGl~~~i~~i~~~v~lp~~~~~l~~~~gl~~p~GILLyGPPGTGKT~LAKAlA~eL~~~i~~~~~~~~~fl~-v~ 258 (512)
T TIGR03689 180 TYADIGGLDSQIEQIRDAVELPFLHPELYREYDLKPPKGVLLYGPPGCGKTLIAKAVANSLAQRIGAETGDKSYFLN-IK 258 (512)
T ss_pred CHHHcCChHHHHHHHHHHHHHHhhCHHHHHhccCCCCcceEEECCCCCcHHHHHHHHHHhhccccccccCCceeEEe-cc
Confidence 345678899999888877531 1123566899999999999999999997754421 223331 11
Q ss_pred chh--cCC-CChHHHHHHHHHHHhcCccccCCCCChHHHHHH-hcCCcEEEEEeCCCChH---------H-----HHHHH
Q 002220 248 EES--ENG-GGLVYLRDRVVSEIFQEDIKIGTPYLPDYIVER-LNRMKVLTVLDDVNKVR---------Q-----LHYLA 309 (951)
Q Consensus 248 ~~~--~~~-~~~~~l~~~il~~l~~~~~~~~~~~~~~~l~~~-l~~~~~LlVlDdv~~~~---------~-----~~~l~ 309 (951)
... ... .......+.++ +..++. ..+++++++||+++... + +..++
T Consensus 259 ~~eLl~kyvGete~~ir~iF----------------~~Ar~~a~~g~p~IIfIDEiD~L~~~R~~~~s~d~e~~il~~LL 322 (512)
T TIGR03689 259 GPELLNKYVGETERQIRLIF----------------QRAREKASDGRPVIVFFDEMDSIFRTRGSGVSSDVETTVVPQLL 322 (512)
T ss_pred chhhcccccchHHHHHHHHH----------------HHHHHHhhcCCCceEEEehhhhhhcccCCCccchHHHHHHHHHH
Confidence 000 000 00000011111 111111 13468999999996321 1 22333
Q ss_pred hccCCCC--CCCEEEEEeCCchhhhh-----cCCCccceEEcCCCChhhhHHHHhhhh
Q 002220 310 CVLDQFG--PGSRIIITTRDKRILDD-----FGVCDTDIYEVNKLRFHEALVLFSNFA 360 (951)
Q Consensus 310 ~~~~~~~--~gs~IlvTtR~~~v~~~-----~~~~~~~~~~l~~L~~~~a~~Lf~~~~ 360 (951)
..+.... .+..||.||...+.... ...+ ..++++..+.++..++|..+.
T Consensus 323 ~~LDgl~~~~~ViVI~ATN~~d~LDpALlRpGRfD--~~I~~~~Pd~e~r~~Il~~~l 378 (512)
T TIGR03689 323 SELDGVESLDNVIVIGASNREDMIDPAILRPGRLD--VKIRIERPDAEAAADIFSKYL 378 (512)
T ss_pred HHhcccccCCceEEEeccCChhhCCHhhcCccccc--eEEEeCCCCHHHHHHHHHHHh
Confidence 3333221 34455666655433221 1233 569999999999999999886
No 142
>TIGR02639 ClpA ATP-dependent Clp protease ATP-binding subunit clpA.
Probab=97.87 E-value=9.1e-05 Score=89.38 Aligned_cols=66 Identities=20% Similarity=0.297 Sum_probs=48.3
Q ss_pred HHHHHHHHHHhhccccccCCCCCCcccchhhHHHHHHhhccCCCCcEEEEEEecCCChhHHHHHHHHHHhhc
Q 002220 164 LVDVIVKDILKKLENVTASTYSDGFVGLNSRIQKIKSLLCIGLPDFRTIGIWGMGGIGKTTLAGAVFKLISR 235 (951)
Q Consensus 164 ~i~~i~~~i~~~~~~~~~~~~~~~~vGr~~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~~~~~~~~ 235 (951)
.+++...++..+.+ +..-+.++||+++++++...|.... ..-+.++|.+|+|||++|+.+++++..
T Consensus 164 ~l~~~~~~l~~~~r----~~~l~~~igr~~ei~~~~~~L~~~~--~~n~lL~G~pG~GKT~l~~~la~~~~~ 229 (731)
T TIGR02639 164 ALEKYTVDLTEKAK----NGKIDPLIGREDELERTIQVLCRRK--KNNPLLVGEPGVGKTAIAEGLALRIAE 229 (731)
T ss_pred HHHHHhhhHHHHHh----cCCCCcccCcHHHHHHHHHHHhcCC--CCceEEECCCCCCHHHHHHHHHHHHHh
Confidence 45555555555542 2334579999999999999886432 334679999999999999999997643
No 143
>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B ....
Probab=97.85 E-value=1.9e-05 Score=56.40 Aligned_cols=39 Identities=36% Similarity=0.606 Sum_probs=21.3
Q ss_pred CCCEEeccCCCCCCcCccCCCCCCCCEEEccCCCCcccc
Q 002220 845 SLERLQLSGCEIKEIPEDIDCLSSLEVLDLSGSKIEILP 883 (951)
Q Consensus 845 ~L~~L~L~~~~l~~l~~~l~~l~~L~~L~L~~n~l~~l~ 883 (951)
+|++|++++|+++++|..+..+++|+.|++++|.++.++
T Consensus 2 ~L~~L~l~~N~i~~l~~~l~~l~~L~~L~l~~N~i~~i~ 40 (44)
T PF12799_consen 2 NLEELDLSNNQITDLPPELSNLPNLETLNLSNNPISDIS 40 (44)
T ss_dssp T-SEEEETSSS-SSHGGHGTTCTTSSEEEETSSCCSBEG
T ss_pred cceEEEccCCCCcccCchHhCCCCCCEEEecCCCCCCCc
Confidence 455556666655555555555566666666666555544
No 144
>PTZ00454 26S protease regulatory subunit 6B-like protein; Provisional
Probab=97.84 E-value=0.00027 Score=78.00 Aligned_cols=174 Identities=22% Similarity=0.250 Sum_probs=96.8
Q ss_pred CCCCCcccchhhHHHHHHhhcc-----------CCCCcEEEEEEecCCChhHHHHHHHHHHhhccccceeecccccchhc
Q 002220 183 TYSDGFVGLNSRIQKIKSLLCI-----------GLPDFRTIGIWGMGGIGKTTLAGAVFKLISREFEGKCFMPNVREESE 251 (951)
Q Consensus 183 ~~~~~~vGr~~~~~~l~~~L~~-----------~~~~~~vv~I~G~gGiGKTtLA~~~~~~~~~~f~~~~~~~~~~~~~~ 251 (951)
..-.++.|.+..+++|.+.+.. +-...+-+.++|++|+|||++|+++++.....|-.. .. +
T Consensus 142 v~~~digGl~~~k~~l~~~v~~pl~~~~~~~~~Gl~~pkgvLL~GppGTGKT~LAkalA~~l~~~fi~i---~~----s- 213 (398)
T PTZ00454 142 VTYSDIGGLDIQKQEIREAVELPLTCPELYEQIGIDPPRGVLLYGPPGTGKTMLAKAVAHHTTATFIRV---VG----S- 213 (398)
T ss_pred CCHHHcCCHHHHHHHHHHHHHHHhcCHHHHHhcCCCCCceEEEECCCCCCHHHHHHHHHHhcCCCEEEE---eh----H-
Confidence 3345688999998888876531 113457799999999999999999998765443211 10 0
Q ss_pred CCCChHHHHHHHHHHHhcCccccCCCCCh-HHHHHHhcCCcEEEEEeCCCChH------------H----HHHHHhccCC
Q 002220 252 NGGGLVYLRDRVVSEIFQEDIKIGTPYLP-DYIVERLNRMKVLTVLDDVNKVR------------Q----LHYLACVLDQ 314 (951)
Q Consensus 252 ~~~~~~~l~~~il~~l~~~~~~~~~~~~~-~~l~~~l~~~~~LlVlDdv~~~~------------~----~~~l~~~~~~ 314 (951)
.+ .....+. ..... +.+.......+.+|++|+++... . +..+...+..
T Consensus 214 ------~l----~~k~~ge-----~~~~lr~lf~~A~~~~P~ILfIDEID~i~~~r~~~~~~~d~~~~r~l~~LL~~ld~ 278 (398)
T PTZ00454 214 ------EF----VQKYLGE-----GPRMVRDVFRLARENAPSIIFIDEVDSIATKRFDAQTGADREVQRILLELLNQMDG 278 (398)
T ss_pred ------HH----HHHhcch-----hHHHHHHHHHHHHhcCCeEEEEECHhhhccccccccCCccHHHHHHHHHHHHHhhc
Confidence 00 0000000 00000 12222234568899999975320 1 2222322222
Q ss_pred C--CCCCEEEEEeCCchhhhh-----cCCCccceEEcCCCChhhhHHHHhhhhccCCCC-ChhHHHHHHHHHHHcCCCc
Q 002220 315 F--GPGSRIIITTRDKRILDD-----FGVCDTDIYEVNKLRFHEALVLFSNFAFKENQC-PGDLLALLERVLKYANGNP 385 (951)
Q Consensus 315 ~--~~gs~IlvTtR~~~v~~~-----~~~~~~~~~~l~~L~~~~a~~Lf~~~~~~~~~~-~~~~~~~~~~i~~~~~g~P 385 (951)
. ..+..||+||...+.... ...+ ..++++..+.++..++|..+..+.... ..+ ..++++.+.|..
T Consensus 279 ~~~~~~v~VI~aTN~~d~LDpAllR~GRfd--~~I~~~~P~~~~R~~Il~~~~~~~~l~~dvd----~~~la~~t~g~s 351 (398)
T PTZ00454 279 FDQTTNVKVIMATNRADTLDPALLRPGRLD--RKIEFPLPDRRQKRLIFQTITSKMNLSEEVD----LEDFVSRPEKIS 351 (398)
T ss_pred cCCCCCEEEEEecCCchhCCHHHcCCCccc--EEEEeCCcCHHHHHHHHHHHHhcCCCCcccC----HHHHHHHcCCCC
Confidence 1 245678888875543322 1233 678999999999888888665332211 112 345566666653
No 145
>TIGR03345 VI_ClpV1 type VI secretion ATPase, ClpV1 family. Members of this protein family are homologs of ClpB, an ATPase associated with chaperone-related functions. These ClpB homologs, designated ClpV1, are a key component of the bacterial pathogenicity-associated type VI secretion system.
Probab=97.83 E-value=0.00031 Score=85.43 Aligned_cols=67 Identities=18% Similarity=0.219 Sum_probs=49.1
Q ss_pred HHHHHHHHHHhhccccccCCCCCCcccchhhHHHHHHhhccCCCCcEEEEEEecCCChhHHHHHHHHHHhhcc
Q 002220 164 LVDVIVKDILKKLENVTASTYSDGFVGLNSRIQKIKSLLCIGLPDFRTIGIWGMGGIGKTTLAGAVFKLISRE 236 (951)
Q Consensus 164 ~i~~i~~~i~~~~~~~~~~~~~~~~vGr~~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~~~~~~~~~ 236 (951)
.+++...+...+.+ +..-+.+|||+.++.++...|.... ..-+.++|.+|+||||+|+.+++++...
T Consensus 169 ~l~~~~~~L~~~~r----~~~ld~~iGr~~ei~~~i~~l~r~~--~~n~lLvG~pGvGKTal~~~La~~i~~~ 235 (852)
T TIGR03345 169 ALDQYTTDLTAQAR----EGKIDPVLGRDDEIRQMIDILLRRR--QNNPILTGEAGVGKTAVVEGLALRIAAG 235 (852)
T ss_pred hHHHHhhhHHHHhc----CCCCCcccCCHHHHHHHHHHHhcCC--cCceeEECCCCCCHHHHHHHHHHHHhhC
Confidence 45555555555442 3344679999999999999886432 2345699999999999999999987543
No 146
>PRK00149 dnaA chromosomal replication initiation protein; Reviewed
Probab=97.82 E-value=0.00034 Score=79.75 Aligned_cols=156 Identities=15% Similarity=0.182 Sum_probs=91.2
Q ss_pred cEEEEEEecCCChhHHHHHHHHHHhhccccc--eeecccccchhcCCCChHHHHHHHHHHHhcCccccCCCCChHHHHHH
Q 002220 209 FRTIGIWGMGGIGKTTLAGAVFKLISREFEG--KCFMPNVREESENGGGLVYLRDRVVSEIFQEDIKIGTPYLPDYIVER 286 (951)
Q Consensus 209 ~~vv~I~G~gGiGKTtLA~~~~~~~~~~f~~--~~~~~~~~~~~~~~~~~~~l~~~il~~l~~~~~~~~~~~~~~~l~~~ 286 (951)
...+.|+|.+|+|||+||+++++.+..++.. ++|+. ...+...+...+... ..+.+.+.
T Consensus 148 ~~~l~l~G~~G~GKThL~~ai~~~~~~~~~~~~v~yi~-----------~~~~~~~~~~~~~~~--------~~~~~~~~ 208 (450)
T PRK00149 148 YNPLFIYGGVGLGKTHLLHAIGNYILEKNPNAKVVYVT-----------SEKFTNDFVNALRNN--------TMEEFKEK 208 (450)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHHHHhCCCCeEEEEE-----------HHHHHHHHHHHHHcC--------cHHHHHHH
Confidence 4568999999999999999999988766532 33442 112223333333211 11344445
Q ss_pred hcCCcEEEEEeCCCChH----HHHHHHhccCC-CCCCCEEEEEeCCch---------hhhhcCCCccceEEcCCCChhhh
Q 002220 287 LNRMKVLTVLDDVNKVR----QLHYLACVLDQ-FGPGSRIIITTRDKR---------ILDDFGVCDTDIYEVNKLRFHEA 352 (951)
Q Consensus 287 l~~~~~LlVlDdv~~~~----~~~~l~~~~~~-~~~gs~IlvTtR~~~---------v~~~~~~~~~~~~~l~~L~~~~a 352 (951)
++. .-+|||||++... ..+.+...+.. ...|..|++||.... +.+.+... .++++++.+.++-
T Consensus 209 ~~~-~dlLiiDDi~~l~~~~~~~~~l~~~~n~l~~~~~~iiits~~~p~~l~~l~~~l~SRl~~g--l~v~i~~pd~~~r 285 (450)
T PRK00149 209 YRS-VDVLLIDDIQFLAGKERTQEEFFHTFNALHEAGKQIVLTSDRPPKELPGLEERLRSRFEWG--LTVDIEPPDLETR 285 (450)
T ss_pred Hhc-CCEEEEehhhhhcCCHHHHHHHHHHHHHHHHCCCcEEEECCCCHHHHHHHHHHHHhHhcCC--eeEEecCCCHHHH
Confidence 543 4488899995321 12223222111 123455788776431 12233222 5799999999999
Q ss_pred HHHHhhhhccCCCCChhHHHHHHHHHHHcCCCchHH
Q 002220 353 LVLFSNFAFKENQCPGDLLALLERVLKYANGNPLAL 388 (951)
Q Consensus 353 ~~Lf~~~~~~~~~~~~~~~~~~~~i~~~~~g~PLal 388 (951)
.+++.+.+-..... --++++.-|++.+.|..-.+
T Consensus 286 ~~il~~~~~~~~~~--l~~e~l~~ia~~~~~~~R~l 319 (450)
T PRK00149 286 IAILKKKAEEEGID--LPDEVLEFIAKNITSNVREL 319 (450)
T ss_pred HHHHHHHHHHcCCC--CCHHHHHHHHcCcCCCHHHH
Confidence 99999887432211 12256777888888876543
No 147
>PRK09376 rho transcription termination factor Rho; Provisional
Probab=97.81 E-value=1.9e-05 Score=84.15 Aligned_cols=92 Identities=14% Similarity=0.068 Sum_probs=59.4
Q ss_pred cEEEEEEecCCChhHHHHHHHHHHhhc-cccceeecccccchhcCCCChHHHHHHHHHHHhcCccccCCCCC------h-
Q 002220 209 FRTIGIWGMGGIGKTTLAGAVFKLISR-EFEGKCFMPNVREESENGGGLVYLRDRVVSEIFQEDIKIGTPYL------P- 280 (951)
Q Consensus 209 ~~vv~I~G~gGiGKTtLA~~~~~~~~~-~f~~~~~~~~~~~~~~~~~~~~~l~~~il~~l~~~~~~~~~~~~------~- 280 (951)
-...+|+|++|+||||||+++|+.+.. +|+..+|+..+++. ...+..+++.+...+............ .
T Consensus 169 GQR~lIvgppGvGKTTLaK~Ian~I~~nhFDv~~~VvLIgER---~~EVtdiqrsIlg~vv~st~d~~~~~~~~~a~~~i 245 (416)
T PRK09376 169 GQRGLIVAPPKAGKTVLLQNIANSITTNHPEVHLIVLLIDER---PEEVTDMQRSVKGEVVASTFDEPAERHVQVAEMVI 245 (416)
T ss_pred CceEEEeCCCCCChhHHHHHHHHHHHhhcCCeEEEEEEeCCc---hhHHHHHHHHhcCcEEEECCCCCHHHHHHHHHHHH
Confidence 357889999999999999999997654 69999999776653 335667777776433222221111100 0
Q ss_pred HHHHHH-hcCCcEEEEEeCCCChH
Q 002220 281 DYIVER-LNRMKVLTVLDDVNKVR 303 (951)
Q Consensus 281 ~~l~~~-l~~~~~LlVlDdv~~~~ 303 (951)
+..+.. -.+++++|++|++....
T Consensus 246 e~Ae~~~e~G~dVlL~iDsItR~a 269 (416)
T PRK09376 246 EKAKRLVEHGKDVVILLDSITRLA 269 (416)
T ss_pred HHHHHHHHcCCCEEEEEEChHHHH
Confidence 111111 25799999999996443
No 148
>KOG2543 consensus Origin recognition complex, subunit 5 [Replication, recombination and repair]
Probab=97.81 E-value=0.00084 Score=70.17 Aligned_cols=169 Identities=18% Similarity=0.228 Sum_probs=102.8
Q ss_pred CCCCcccchhhHHHHHHhhccCCCC-cEEEEEEecCCChhHHHHHHHHHHhhccccceeecccccchhcCCCChHHHHHH
Q 002220 184 YSDGFVGLNSRIQKIKSLLCIGLPD-FRTIGIWGMGGIGKTTLAGAVFKLISREFEGKCFMPNVREESENGGGLVYLRDR 262 (951)
Q Consensus 184 ~~~~~vGr~~~~~~l~~~L~~~~~~-~~vv~I~G~gGiGKTtLA~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~l~~~ 262 (951)
..+.+.+|+.++..+..++...+.. +..|.|+|.+|.|||.+.+++.+.... ..+|+.++. .+....+...
T Consensus 4 l~~~v~~Re~qi~~L~~Llg~~~~~~PS~~~iyG~sgTGKT~~~r~~l~~~n~---~~vw~n~~e-----cft~~~lle~ 75 (438)
T KOG2543|consen 4 LEPNVPCRESQIRRLKSLLGNNSCTIPSIVHIYGHSGTGKTYLVRQLLRKLNL---ENVWLNCVE-----CFTYAILLEK 75 (438)
T ss_pred cccCccchHHHHHHHHHHhCCCCcccceeEEEeccCCCchhHHHHHHHhhcCC---cceeeehHH-----hccHHHHHHH
Confidence 4567899999999999999766553 455699999999999999999986522 346776544 4556777778
Q ss_pred HHHHHh-cCccccCCCC--Ch--H---HHHH--Hh--cCCcEEEEEeCCCChHHHHH-----HHhccCCCCCCCEEEEEe
Q 002220 263 VVSEIF-QEDIKIGTPY--LP--D---YIVE--RL--NRMKVLTVLDDVNKVRQLHY-----LACVLDQFGPGSRIIITT 325 (951)
Q Consensus 263 il~~l~-~~~~~~~~~~--~~--~---~l~~--~l--~~~~~LlVlDdv~~~~~~~~-----l~~~~~~~~~gs~IlvTt 325 (951)
|+.+.. ....+..... +. + .+.+ .. +++.++||||+++...+.+. +.....-.....-+|+++
T Consensus 76 IL~~~~~~d~dg~~~~~~~en~~d~i~~l~q~~~~t~~d~~~~liLDnad~lrD~~a~ll~~l~~L~el~~~~~i~iils 155 (438)
T KOG2543|consen 76 ILNKSQLADKDGDKVEGDAENFSDFIYLLVQWPAATNRDQKVFLILDNADALRDMDAILLQCLFRLYELLNEPTIVIILS 155 (438)
T ss_pred HHHHhccCCCchhhhhhHHHHHHHHHHHHHhhHHhhccCceEEEEEcCHHhhhccchHHHHHHHHHHHHhCCCceEEEEe
Confidence 877774 2221111111 00 1 1111 11 14689999999976655332 221111111223344444
Q ss_pred CCc--hh-hhhcCCCccceEEcCCCChhhhHHHHhhhh
Q 002220 326 RDK--RI-LDDFGVCDTDIYEVNKLRFHEALVLFSNFA 360 (951)
Q Consensus 326 R~~--~v-~~~~~~~~~~~~~l~~L~~~~a~~Lf~~~~ 360 (951)
-.. .. ...+|.-...++..+.-+.+|..+++.+.-
T Consensus 156 ~~~~e~~y~~n~g~~~i~~l~fP~Ys~~e~~~Il~~~~ 193 (438)
T KOG2543|consen 156 APSCEKQYLINTGTLEIVVLHFPQYSVEETQVILSRDN 193 (438)
T ss_pred ccccHHHhhcccCCCCceEEecCCCCHHHHHHHHhcCC
Confidence 332 11 222454434567888899999999987654
No 149
>PRK14948 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.80 E-value=0.00049 Score=80.39 Aligned_cols=196 Identities=18% Similarity=0.133 Sum_probs=107.5
Q ss_pred CCCCCCcccchhhHHHHHHhhccCCCCcEEEEEEecCCChhHHHHHHHHHHhhccc-cceeecccccchhcCCCChHHHH
Q 002220 182 STYSDGFVGLNSRIQKIKSLLCIGLPDFRTIGIWGMGGIGKTTLAGAVFKLISREF-EGKCFMPNVREESENGGGLVYLR 260 (951)
Q Consensus 182 ~~~~~~~vGr~~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~~~~~~~~~f-~~~~~~~~~~~~~~~~~~~~~l~ 260 (951)
|.....++|.+...+.|..++..+. -.+.+.++|..|+||||+|+.+++.+-... .....- ..+.-...
T Consensus 12 P~~f~~liGq~~i~~~L~~~l~~~r-l~~a~Lf~Gp~G~GKttlA~~lAk~L~c~~~~~~~~~---------~Cg~C~~C 81 (620)
T PRK14948 12 PQRFDELVGQEAIATTLKNALISNR-IAPAYLFTGPRGTGKTSSARILAKSLNCLNSDKPTPE---------PCGKCELC 81 (620)
T ss_pred CCcHhhccChHHHHHHHHHHHHcCC-CCceEEEECCCCCChHHHHHHHHHHhcCCCcCCCCCC---------CCcccHHH
Confidence 3445679999999999999886432 235678999999999999999998653321 100000 00000111
Q ss_pred HHHHHHHhcCccccC-CCCCh-HHHHHHh--------cCCcEEEEEeCCCCh--HHHHHHHhccCCCCCCCEEEEEeCCc
Q 002220 261 DRVVSEIFQEDIKIG-TPYLP-DYIVERL--------NRMKVLTVLDDVNKV--RQLHYLACVLDQFGPGSRIIITTRDK 328 (951)
Q Consensus 261 ~~il~~l~~~~~~~~-~~~~~-~~l~~~l--------~~~~~LlVlDdv~~~--~~~~~l~~~~~~~~~gs~IlvTtR~~ 328 (951)
+.+.......-.... ..... +.+++.. .+++-++|+|+++.. +..+.++..+......+.+|++|.+.
T Consensus 82 ~~i~~g~h~D~~ei~~~~~~~vd~IReii~~a~~~p~~~~~KViIIDEad~Lt~~a~naLLK~LEePp~~tvfIL~t~~~ 161 (620)
T PRK14948 82 RAIAAGNALDVIEIDAASNTGVDNIRELIERAQFAPVQARWKVYVIDECHMLSTAAFNALLKTLEEPPPRVVFVLATTDP 161 (620)
T ss_pred HHHhcCCCccEEEEeccccCCHHHHHHHHHHHhhChhcCCceEEEEECccccCHHHHHHHHHHHhcCCcCeEEEEEeCCh
Confidence 111111000000000 00001 2222221 244568899999754 44666766665544455555555433
Q ss_pred -hhhhhcCCCccceEEcCCCChhhhHHHHhhhhccCCCCChhHHHHHHHHHHHcCCCchHHHH
Q 002220 329 -RILDDFGVCDTDIYEVNKLRFHEALVLFSNFAFKENQCPGDLLALLERVLKYANGNPLALRV 390 (951)
Q Consensus 329 -~v~~~~~~~~~~~~~l~~L~~~~a~~Lf~~~~~~~~~~~~~~~~~~~~i~~~~~g~PLal~~ 390 (951)
.+..... .....+++..++.++....+.+.+.......+ .+.+..|++.++|.+..+..
T Consensus 162 ~~llpTIr-SRc~~~~f~~l~~~ei~~~L~~ia~kegi~is--~~al~~La~~s~G~lr~A~~ 221 (620)
T PRK14948 162 QRVLPTII-SRCQRFDFRRIPLEAMVQHLSEIAEKESIEIE--PEALTLVAQRSQGGLRDAES 221 (620)
T ss_pred hhhhHHHH-hheeEEEecCCCHHHHHHHHHHHHHHhCCCCC--HHHHHHHHHHcCCCHHHHHH
Confidence 3332211 01267899999999988888776643221111 24577888999998754443
No 150
>TIGR02880 cbbX_cfxQ probable Rubsico expression protein CbbX. Proteins in this family are now designated CbbX. Some previously were CfxQ (carbon fixation Q). Its gene is often found immmediately downstream of the Rubisco large and small chain genes, and it is suggested to be necessary for Rubisco expression. CbbX has been shown to be necessary for photoautotrophic growth. This protein belongs to the larger family of pfam00004, ATPase family Associated with various cellular Activities. Within that larger family, members of this family are most closely related to the stage V sporulation protein K, or SpoVK, in endospore-forming bacteria such as Bacillus subtilis.
Probab=97.80 E-value=0.00051 Score=72.69 Aligned_cols=128 Identities=17% Similarity=0.220 Sum_probs=69.2
Q ss_pred EEEEEecCCChhHHHHHHHHHHhhcc-c-cceeecccccchhcCCCChHHHHHHHHHHHhcCccccCCCCChHHHHHHhc
Q 002220 211 TIGIWGMGGIGKTTLAGAVFKLISRE-F-EGKCFMPNVREESENGGGLVYLRDRVVSEIFQEDIKIGTPYLPDYIVERLN 288 (951)
Q Consensus 211 vv~I~G~gGiGKTtLA~~~~~~~~~~-f-~~~~~~~~~~~~~~~~~~~~~l~~~il~~l~~~~~~~~~~~~~~~l~~~l~ 288 (951)
-+.++|.+|+|||++|+.++..+... + ....|+... . ..+...+.+... ....+.+.+.
T Consensus 60 ~vll~G~pGTGKT~lA~~ia~~l~~~g~~~~~~~v~v~---------~----~~l~~~~~g~~~----~~~~~~~~~a-- 120 (284)
T TIGR02880 60 HMSFTGNPGTGKTTVALRMAQILHRLGYVRKGHLVSVT---------R----DDLVGQYIGHTA----PKTKEILKRA-- 120 (284)
T ss_pred eEEEEcCCCCCHHHHHHHHHHHHHHcCCcccceEEEec---------H----HHHhHhhcccch----HHHHHHHHHc--
Confidence 58899999999999999988755432 1 111122100 0 111222111100 0000122221
Q ss_pred CCcEEEEEeCCCCh-----------HHHHHHHhccCCCCCCCEEEEEeCCchhhhhc--------CCCccceEEcCCCCh
Q 002220 289 RMKVLTVLDDVNKV-----------RQLHYLACVLDQFGPGSRIIITTRDKRILDDF--------GVCDTDIYEVNKLRF 349 (951)
Q Consensus 289 ~~~~LlVlDdv~~~-----------~~~~~l~~~~~~~~~gs~IlvTtR~~~v~~~~--------~~~~~~~~~l~~L~~ 349 (951)
..-+|+||++... +..+.+...+.....+.+||+++.....-... ... ..+++++++.
T Consensus 121 -~~gvL~iDEi~~L~~~~~~~~~~~~~~~~Ll~~le~~~~~~~vI~a~~~~~~~~~~~~np~L~sR~~--~~i~fp~l~~ 197 (284)
T TIGR02880 121 -MGGVLFIDEAYYLYRPDNERDYGQEAIEILLQVMENQRDDLVVILAGYKDRMDSFFESNPGFSSRVA--HHVDFPDYSE 197 (284)
T ss_pred -cCcEEEEechhhhccCCCccchHHHHHHHHHHHHhcCCCCEEEEEeCCcHHHHHHHhhCHHHHhhCC--cEEEeCCcCH
Confidence 3358889998622 22444555554444566777776543221111 112 5799999999
Q ss_pred hhhHHHHhhhh
Q 002220 350 HEALVLFSNFA 360 (951)
Q Consensus 350 ~~a~~Lf~~~~ 360 (951)
+|..+++...+
T Consensus 198 edl~~I~~~~l 208 (284)
T TIGR02880 198 AELLVIAGLML 208 (284)
T ss_pred HHHHHHHHHHH
Confidence 99999988776
No 151
>COG2255 RuvB Holliday junction resolvasome, helicase subunit [DNA replication, recombination, and repair]
Probab=97.77 E-value=0.00062 Score=68.28 Aligned_cols=256 Identities=15% Similarity=0.169 Sum_probs=131.4
Q ss_pred CCCCCCcccchhhHHHHHHhhcc---CCCCcEEEEEEecCCChhHHHHHHHHHHhhccccceeecccccchhcCCCChHH
Q 002220 182 STYSDGFVGLNSRIQKIKSLLCI---GLPDFRTIGIWGMGGIGKTTLAGAVFKLISREFEGKCFMPNVREESENGGGLVY 258 (951)
Q Consensus 182 ~~~~~~~vGr~~~~~~l~~~L~~---~~~~~~vv~I~G~gGiGKTtLA~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~ 258 (951)
|..-.+|||.++-.+.+.=.+.. .....--|.++|++|.||||||.-+++++..++.... . ....
T Consensus 22 P~~l~efiGQ~~vk~~L~ifI~AAk~r~e~lDHvLl~GPPGlGKTTLA~IIA~Emgvn~k~ts---------G---p~le 89 (332)
T COG2255 22 PKTLDEFIGQEKVKEQLQIFIKAAKKRGEALDHVLLFGPPGLGKTTLAHIIANELGVNLKITS---------G---PALE 89 (332)
T ss_pred cccHHHhcChHHHHHHHHHHHHHHHhcCCCcCeEEeeCCCCCcHHHHHHHHHHHhcCCeEecc---------c---cccc
Confidence 44567899999988888766652 2234567899999999999999999998866654211 0 0000
Q ss_pred HHHHHHHHHhcCccccCCCCChHHHHHHhcCCcEEEEEeCCCChHH-HHHHH-hccCC--------CCCCC---------
Q 002220 259 LRDRVVSEIFQEDIKIGTPYLPDYIVERLNRMKVLTVLDDVNKVRQ-LHYLA-CVLDQ--------FGPGS--------- 319 (951)
Q Consensus 259 l~~~il~~l~~~~~~~~~~~~~~~l~~~l~~~~~LlVlDdv~~~~~-~~~l~-~~~~~--------~~~gs--------- 319 (951)
-...++.-+ ..|+... ++.+|.+..... .+.++ +.... .++++
T Consensus 90 K~gDlaaiL-----------------t~Le~~D-VLFIDEIHrl~~~vEE~LYpaMEDf~lDI~IG~gp~Arsv~ldLpp 151 (332)
T COG2255 90 KPGDLAAIL-----------------TNLEEGD-VLFIDEIHRLSPAVEEVLYPAMEDFRLDIIIGKGPAARSIRLDLPP 151 (332)
T ss_pred ChhhHHHHH-----------------hcCCcCC-eEEEehhhhcChhHHHHhhhhhhheeEEEEEccCCccceEeccCCC
Confidence 011111111 1122222 334566543221 22221 11111 12333
Q ss_pred --EEEEEeCCchhh----hhcCCCccceEEcCCCChhhhHHHHhhhhccCCCCChhHHHHHHHHHHHcCCCchHHHHHhh
Q 002220 320 --RIIITTRDKRIL----DDFGVCDTDIYEVNKLRFHEALVLFSNFAFKENQCPGDLLALLERVLKYANGNPLALRVLGS 393 (951)
Q Consensus 320 --~IlvTtR~~~v~----~~~~~~~~~~~~l~~L~~~~a~~Lf~~~~~~~~~~~~~~~~~~~~i~~~~~g~PLal~~~~~ 393 (951)
-|=.|||.-.+. ..+| -+..++--+.+|-.+...+.+..-.. +-.++.+.+|+++..|-|--..-+-+
T Consensus 152 FTLIGATTr~G~lt~PLrdRFG----i~~rlefY~~~eL~~Iv~r~a~~l~i--~i~~~~a~eIA~rSRGTPRIAnRLLr 225 (332)
T COG2255 152 FTLIGATTRAGMLTNPLRDRFG----IIQRLEFYTVEELEEIVKRSAKILGI--EIDEEAALEIARRSRGTPRIANRLLR 225 (332)
T ss_pred eeEeeeccccccccchhHHhcC----CeeeeecCCHHHHHHHHHHHHHHhCC--CCChHHHHHHHHhccCCcHHHHHHHH
Confidence 344788866442 3344 46789999999999999988732221 11225678999999999964433333
Q ss_pred hcCCCCHHHHHHHHHH--HhcCCCcchHHHHHHhhcCCchhhHhhhhheecccCCC--CHHHHHHHhcCCCC--cccchH
Q 002220 394 FFHRKSKSDWEKALEN--LNRISDPDIYDVLKISYNDLRPEEKSMFLDIACFFAGE--KKDFLTCILDDPNF--PHCGLN 467 (951)
Q Consensus 394 ~L~~~~~~~w~~~l~~--l~~~~~~~i~~~l~~sy~~L~~~~k~~fl~~a~f~~~~--~~~~l~~~~~~~~~--~~~~l~ 467 (951)
..++ +..+... +...........+.+--.+|+...++.+..+.-.+.|- ..+.+......+.. .+..--
T Consensus 226 RVRD-----fa~V~~~~~I~~~ia~~aL~~L~Vd~~GLd~~D~k~L~~li~~f~GgPVGl~tia~~lge~~~TiEdv~EP 300 (332)
T COG2255 226 RVRD-----FAQVKGDGDIDRDIADKALKMLDVDELGLDEIDRKYLRALIEQFGGGPVGLDTIAAALGEDRDTIEDVIEP 300 (332)
T ss_pred HHHH-----HHHHhcCCcccHHHHHHHHHHhCcccccccHHHHHHHHHHHHHhCCCCccHHHHHHHhcCchhHHHHHHhH
Confidence 2221 1100000 00000011223333333455555555554444444332 24444444433222 222234
Q ss_pred HHHhccCceee
Q 002220 468 VLIEKSLITMS 478 (951)
Q Consensus 468 ~L~~~sLi~~~ 478 (951)
.|++.++++..
T Consensus 301 yLiq~gfi~RT 311 (332)
T COG2255 301 YLIQQGFIQRT 311 (332)
T ss_pred HHHHhchhhhC
Confidence 57778888776
No 152
>CHL00181 cbbX CbbX; Provisional
Probab=97.77 E-value=0.00074 Score=71.35 Aligned_cols=128 Identities=14% Similarity=0.193 Sum_probs=70.1
Q ss_pred EEEEEEecCCChhHHHHHHHHHHhhcc-c-cceeecccccchhcCCCChHHHHHHHHHHHhcCccccCCCCChHHHHHHh
Q 002220 210 RTIGIWGMGGIGKTTLAGAVFKLISRE-F-EGKCFMPNVREESENGGGLVYLRDRVVSEIFQEDIKIGTPYLPDYIVERL 287 (951)
Q Consensus 210 ~vv~I~G~gGiGKTtLA~~~~~~~~~~-f-~~~~~~~~~~~~~~~~~~~~~l~~~il~~l~~~~~~~~~~~~~~~l~~~l 287 (951)
..+.++|.+|+||||+|+.+++..... + ...-|+.. + . ..+.....+... ......+.+.
T Consensus 60 ~~ill~G~pGtGKT~lAr~la~~~~~~g~~~~~~~~~v----~-----~----~~l~~~~~g~~~----~~~~~~l~~a- 121 (287)
T CHL00181 60 LHMSFTGSPGTGKTTVALKMADILYKLGYIKKGHLLTV----T-----R----DDLVGQYIGHTA----PKTKEVLKKA- 121 (287)
T ss_pred ceEEEECCCCCCHHHHHHHHHHHHHHcCCCCCCceEEe----c-----H----HHHHHHHhccch----HHHHHHHHHc-
Confidence 458899999999999999998854321 1 11112210 0 0 112222211100 0000122221
Q ss_pred cCCcEEEEEeCCCCh-----------HHHHHHHhccCCCCCCCEEEEEeCCchh----------hhhcCCCccceEEcCC
Q 002220 288 NRMKVLTVLDDVNKV-----------RQLHYLACVLDQFGPGSRIIITTRDKRI----------LDDFGVCDTDIYEVNK 346 (951)
Q Consensus 288 ~~~~~LlVlDdv~~~-----------~~~~~l~~~~~~~~~gs~IlvTtR~~~v----------~~~~~~~~~~~~~l~~ 346 (951)
..-+|++|+++.. +..+.+...+.....+.+||+++..... ... .. ..+++++
T Consensus 122 --~ggVLfIDE~~~l~~~~~~~~~~~e~~~~L~~~me~~~~~~~vI~ag~~~~~~~~~~~np~L~sR--~~--~~i~F~~ 195 (287)
T CHL00181 122 --MGGVLFIDEAYYLYKPDNERDYGSEAIEILLQVMENQRDDLVVIFAGYKDRMDKFYESNPGLSSR--IA--NHVDFPD 195 (287)
T ss_pred --cCCEEEEEccchhccCCCccchHHHHHHHHHHHHhcCCCCEEEEEeCCcHHHHHHHhcCHHHHHh--CC--ceEEcCC
Confidence 2348899998642 2344455544444455677777654332 222 22 5799999
Q ss_pred CChhhhHHHHhhhhc
Q 002220 347 LRFHEALVLFSNFAF 361 (951)
Q Consensus 347 L~~~~a~~Lf~~~~~ 361 (951)
++.+|..+++...+-
T Consensus 196 ~t~~el~~I~~~~l~ 210 (287)
T CHL00181 196 YTPEELLQIAKIMLE 210 (287)
T ss_pred cCHHHHHHHHHHHHH
Confidence 999999999888764
No 153
>PRK14971 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.76 E-value=0.00073 Score=79.02 Aligned_cols=180 Identities=16% Similarity=0.192 Sum_probs=106.5
Q ss_pred CCCCCCcccchhhHHHHHHhhccCCCCcEEEEEEecCCChhHHHHHHHHHHhhcc-----------------------cc
Q 002220 182 STYSDGFVGLNSRIQKIKSLLCIGLPDFRTIGIWGMGGIGKTTLAGAVFKLISRE-----------------------FE 238 (951)
Q Consensus 182 ~~~~~~~vGr~~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~~~~~~~~~-----------------------f~ 238 (951)
|...+.++|.+...+.|...+..+ .-.+.+.++|+.|+||||+|+.++..+-.. |+
T Consensus 13 P~~f~~viGq~~~~~~L~~~i~~~-~l~hayLf~Gp~G~GKtt~A~~lAk~l~c~~~~~~~~~Cg~C~sC~~~~~~~~~n 91 (614)
T PRK14971 13 PSTFESVVGQEALTTTLKNAIATN-KLAHAYLFCGPRGVGKTTCARIFAKTINCQNLTADGEACNECESCVAFNEQRSYN 91 (614)
T ss_pred CCCHHHhcCcHHHHHHHHHHHHcC-CCCeeEEEECCCCCCHHHHHHHHHHHhCCCCCCCCCCCCCcchHHHHHhcCCCCc
Confidence 344568999999999999998543 234678899999999999999998865311 11
Q ss_pred ceeecccccchhcCCCChHHHHHHHHHHHhcCccccCCCCChHHHHHHhcCCcEEEEEeCCCCh--HHHHHHHhccCCCC
Q 002220 239 GKCFMPNVREESENGGGLVYLRDRVVSEIFQEDIKIGTPYLPDYIVERLNRMKVLTVLDDVNKV--RQLHYLACVLDQFG 316 (951)
Q Consensus 239 ~~~~~~~~~~~~~~~~~~~~l~~~il~~l~~~~~~~~~~~~~~~l~~~l~~~~~LlVlDdv~~~--~~~~~l~~~~~~~~ 316 (951)
... +. . .. ..++..+. .++.++... -..+++-++|+|+++.. ...+.+...+....
T Consensus 92 ~~~-ld-~---~~-~~~vd~Ir-~li~~~~~~---------------P~~~~~KVvIIdea~~Ls~~a~naLLK~LEepp 149 (614)
T PRK14971 92 IHE-LD-A---AS-NNSVDDIR-NLIEQVRIP---------------PQIGKYKIYIIDEVHMLSQAAFNAFLKTLEEPP 149 (614)
T ss_pred eEE-ec-c---cc-cCCHHHHH-HHHHHHhhC---------------cccCCcEEEEEECcccCCHHHHHHHHHHHhCCC
Confidence 100 00 0 00 01111111 111111000 01234558899998754 44666776666545
Q ss_pred CCCEEEEEe-CCchhhhhcCCCccceEEcCCCChhhhHHHHhhhhccCCCCChhHHHHHHHHHHHcCCCchH
Q 002220 317 PGSRIIITT-RDKRILDDFGVCDTDIYEVNKLRFHEALVLFSNFAFKENQCPGDLLALLERVLKYANGNPLA 387 (951)
Q Consensus 317 ~gs~IlvTt-R~~~v~~~~~~~~~~~~~l~~L~~~~a~~Lf~~~~~~~~~~~~~~~~~~~~i~~~~~g~PLa 387 (951)
.++.+|++| +...+.....- ...++++.+++.++....+.+.+-...... ..+.+..|++.++|..--
T Consensus 150 ~~tifIL~tt~~~kIl~tI~S-Rc~iv~f~~ls~~ei~~~L~~ia~~egi~i--~~~al~~La~~s~gdlr~ 218 (614)
T PRK14971 150 SYAIFILATTEKHKILPTILS-RCQIFDFNRIQVADIVNHLQYVASKEGITA--EPEALNVIAQKADGGMRD 218 (614)
T ss_pred CCeEEEEEeCCchhchHHHHh-hhheeecCCCCHHHHHHHHHHHHHHcCCCC--CHHHHHHHHHHcCCCHHH
Confidence 566665544 44444432211 127899999999999999887664332211 124567888899987643
No 154
>PTZ00361 26 proteosome regulatory subunit 4-like protein; Provisional
Probab=97.76 E-value=0.00015 Score=80.54 Aligned_cols=153 Identities=21% Similarity=0.193 Sum_probs=88.4
Q ss_pred CCCcccchhhHHHHHHhhcc-----------CCCCcEEEEEEecCCChhHHHHHHHHHHhhccccceeecccccchhcCC
Q 002220 185 SDGFVGLNSRIQKIKSLLCI-----------GLPDFRTIGIWGMGGIGKTTLAGAVFKLISREFEGKCFMPNVREESENG 253 (951)
Q Consensus 185 ~~~~vGr~~~~~~l~~~L~~-----------~~~~~~vv~I~G~gGiGKTtLA~~~~~~~~~~f~~~~~~~~~~~~~~~~ 253 (951)
-.++.|.+..+++|.+.+.. +-...+-+.++|++|+|||++|+++++.....|-.+ ... +.....
T Consensus 182 ~~DIgGl~~qi~~l~e~v~lpl~~p~~~~~~gi~~p~gVLL~GPPGTGKT~LAraIA~el~~~fi~V---~~s-eL~~k~ 257 (438)
T PTZ00361 182 YADIGGLEQQIQEIKEAVELPLTHPELYDDIGIKPPKGVILYGPPGTGKTLLAKAVANETSATFLRV---VGS-ELIQKY 257 (438)
T ss_pred HHHhcCHHHHHHHHHHHHHhhhhCHHHHHhcCCCCCcEEEEECCCCCCHHHHHHHHHHhhCCCEEEE---ecc-hhhhhh
Confidence 35678999999999887641 112346788999999999999999999776554211 100 000000
Q ss_pred C-ChHHHHHHHHHHHhcCccccCCCCChHHHHHHhcCCcEEEEEeCCCChH----------------HHHHHHhccCCC-
Q 002220 254 G-GLVYLRDRVVSEIFQEDIKIGTPYLPDYIVERLNRMKVLTVLDDVNKVR----------------QLHYLACVLDQF- 315 (951)
Q Consensus 254 ~-~~~~l~~~il~~l~~~~~~~~~~~~~~~l~~~l~~~~~LlVlDdv~~~~----------------~~~~l~~~~~~~- 315 (951)
. ......+ +.+.......+.+++||+++... .+..++..+..+
T Consensus 258 ~Ge~~~~vr-------------------~lF~~A~~~~P~ILfIDEID~l~~kR~~~~sgg~~e~qr~ll~LL~~Ldg~~ 318 (438)
T PTZ00361 258 LGDGPKLVR-------------------ELFRVAEENAPSIVFIDEIDAIGTKRYDATSGGEKEIQRTMLELLNQLDGFD 318 (438)
T ss_pred cchHHHHHH-------------------HHHHHHHhCCCcEEeHHHHHHHhccCCCCCCcccHHHHHHHHHHHHHHhhhc
Confidence 0 0000001 11222223467788889874211 011222222211
Q ss_pred -CCCCEEEEEeCCchhhhhc-----CCCccceEEcCCCChhhhHHHHhhhhcc
Q 002220 316 -GPGSRIIITTRDKRILDDF-----GVCDTDIYEVNKLRFHEALVLFSNFAFK 362 (951)
Q Consensus 316 -~~gs~IlvTtR~~~v~~~~-----~~~~~~~~~l~~L~~~~a~~Lf~~~~~~ 362 (951)
..+.+||+||...+..... ..+ ..++++..+.++..++|..+..+
T Consensus 319 ~~~~V~VI~ATNr~d~LDpaLlRpGRfd--~~I~~~~Pd~~~R~~Il~~~~~k 369 (438)
T PTZ00361 319 SRGDVKVIMATNRIESLDPALIRPGRID--RKIEFPNPDEKTKRRIFEIHTSK 369 (438)
T ss_pred ccCCeEEEEecCChHHhhHHhccCCeeE--EEEEeCCCCHHHHHHHHHHHHhc
Confidence 2356788888765443321 233 67899999999999999977643
No 155
>PRK12422 chromosomal replication initiation protein; Provisional
Probab=97.76 E-value=0.00043 Score=77.74 Aligned_cols=152 Identities=14% Similarity=0.122 Sum_probs=84.9
Q ss_pred cEEEEEEecCCChhHHHHHHHHHHhhccccceeecccccchhcCCCChHHHHHHHHHHHhcCccccCCCCChHHHHHHhc
Q 002220 209 FRTIGIWGMGGIGKTTLAGAVFKLISREFEGKCFMPNVREESENGGGLVYLRDRVVSEIFQEDIKIGTPYLPDYIVERLN 288 (951)
Q Consensus 209 ~~vv~I~G~gGiGKTtLA~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~l~~~il~~l~~~~~~~~~~~~~~~l~~~l~ 288 (951)
..-+.|+|..|+|||+||+++++.+......++|+. ...+...+...+... ..+.+++..+
T Consensus 141 ~npl~L~G~~G~GKTHLl~Ai~~~l~~~~~~v~yi~-----------~~~f~~~~~~~l~~~--------~~~~f~~~~~ 201 (445)
T PRK12422 141 FNPIYLFGPEGSGKTHLMQAAVHALRESGGKILYVR-----------SELFTEHLVSAIRSG--------EMQRFRQFYR 201 (445)
T ss_pred CceEEEEcCCCCCHHHHHHHHHHHHHHcCCCEEEee-----------HHHHHHHHHHHHhcc--------hHHHHHHHcc
Confidence 356889999999999999999998765444455553 112223333333211 1133444443
Q ss_pred CCcEEEEEeCCCChH----HHHHHHhccCC-CCCCCEEEEEeCCc---------hhhhhcCCCccceEEcCCCChhhhHH
Q 002220 289 RMKVLTVLDDVNKVR----QLHYLACVLDQ-FGPGSRIIITTRDK---------RILDDFGVCDTDIYEVNKLRFHEALV 354 (951)
Q Consensus 289 ~~~~LlVlDdv~~~~----~~~~l~~~~~~-~~~gs~IlvTtR~~---------~v~~~~~~~~~~~~~l~~L~~~~a~~ 354 (951)
. .-++++||+.... ..+.+...+.. ...|..||+||... .+...+... ..+++.+++.++..+
T Consensus 202 ~-~dvLiIDDiq~l~~k~~~qeelf~l~N~l~~~~k~IIlts~~~p~~l~~l~~rL~SR~~~G--l~~~l~~pd~e~r~~ 278 (445)
T PRK12422 202 N-VDALFIEDIEVFSGKGATQEEFFHTFNSLHTEGKLIVISSTCAPQDLKAMEERLISRFEWG--IAIPLHPLTKEGLRS 278 (445)
T ss_pred c-CCEEEEcchhhhcCChhhHHHHHHHHHHHHHCCCcEEEecCCCHHHHhhhHHHHHhhhcCC--eEEecCCCCHHHHHH
Confidence 3 4478889985321 11222222111 12355788888542 122223222 678999999999999
Q ss_pred HHhhhhccCCCCChhHHHHHHHHHHHcCCC
Q 002220 355 LFSNFAFKENQCPGDLLALLERVLKYANGN 384 (951)
Q Consensus 355 Lf~~~~~~~~~~~~~~~~~~~~i~~~~~g~ 384 (951)
++.+.+-.....- -++++.-|+....+.
T Consensus 279 iL~~k~~~~~~~l--~~evl~~la~~~~~d 306 (445)
T PRK12422 279 FLERKAEALSIRI--EETALDFLIEALSSN 306 (445)
T ss_pred HHHHHHHHcCCCC--CHHHHHHHHHhcCCC
Confidence 9988774322111 124455555555544
No 156
>PRK05707 DNA polymerase III subunit delta'; Validated
Probab=97.74 E-value=0.0011 Score=71.45 Aligned_cols=95 Identities=13% Similarity=0.115 Sum_probs=61.3
Q ss_pred CcEEEEEeCCCC--hHHHHHHHhccCCCCCCCEEEEEeCCc-hhhhhcCCCccceEEcCCCChhhhHHHHhhhhccCCCC
Q 002220 290 MKVLTVLDDVNK--VRQLHYLACVLDQFGPGSRIIITTRDK-RILDDFGVCDTDIYEVNKLRFHEALVLFSNFAFKENQC 366 (951)
Q Consensus 290 ~~~LlVlDdv~~--~~~~~~l~~~~~~~~~gs~IlvTtR~~-~v~~~~~~~~~~~~~l~~L~~~~a~~Lf~~~~~~~~~~ 366 (951)
++-++|+|+++. ......++..+....+++.+|+||.+. .+..... .....+.+.+++.+++.+.+...... .
T Consensus 106 ~~kv~iI~~a~~m~~~aaNaLLK~LEEPp~~~~fiL~t~~~~~ll~TI~-SRc~~~~~~~~~~~~~~~~L~~~~~~--~- 181 (328)
T PRK05707 106 GRKVVLIEPAEAMNRNAANALLKSLEEPSGDTVLLLISHQPSRLLPTIK-SRCQQQACPLPSNEESLQWLQQALPE--S- 181 (328)
T ss_pred CCeEEEECChhhCCHHHHHHHHHHHhCCCCCeEEEEEECChhhCcHHHH-hhceeeeCCCcCHHHHHHHHHHhccc--C-
Confidence 344556799974 445666766666555677777777765 3332211 01277999999999999999765311 1
Q ss_pred ChhHHHHHHHHHHHcCCCchHHHHH
Q 002220 367 PGDLLALLERVLKYANGNPLALRVL 391 (951)
Q Consensus 367 ~~~~~~~~~~i~~~~~g~PLal~~~ 391 (951)
. .+.+..++..++|.|+....+
T Consensus 182 ~---~~~~~~~l~la~Gsp~~A~~l 203 (328)
T PRK05707 182 D---ERERIELLTLAGGSPLRALQL 203 (328)
T ss_pred C---hHHHHHHHHHcCCCHHHHHHH
Confidence 1 133557788999999765544
No 157
>PRK06647 DNA polymerase III subunits gamma and tau; Validated
Probab=97.74 E-value=0.0011 Score=76.56 Aligned_cols=188 Identities=11% Similarity=0.104 Sum_probs=107.6
Q ss_pred CCCCCCcccchhhHHHHHHhhccCCCCcEEEEEEecCCChhHHHHHHHHHHhhcc-----ccce-eecccccchhc-CCC
Q 002220 182 STYSDGFVGLNSRIQKIKSLLCIGLPDFRTIGIWGMGGIGKTTLAGAVFKLISRE-----FEGK-CFMPNVREESE-NGG 254 (951)
Q Consensus 182 ~~~~~~~vGr~~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~~~~~~~~~-----f~~~-~~~~~~~~~~~-~~~ 254 (951)
|....+++|-+.-++.|...+..+ .-.+.+.++|+.|+||||+|+.+++.+-.. +++. |.- .+.... ...
T Consensus 12 P~~f~diiGqe~iv~~L~~~i~~~-~i~hayLf~Gp~G~GKTt~Ar~lAk~L~c~~~~~~~pC~~C~~--C~~i~~~~~~ 88 (563)
T PRK06647 12 PRDFNSLEGQDFVVETLKHSIESN-KIANAYIFSGPRGVGKTSSARAFARCLNCVNGPTPMPCGECSS--CKSIDNDNSL 88 (563)
T ss_pred CCCHHHccCcHHHHHHHHHHHHcC-CCCeEEEEECCCCCCHHHHHHHHHHhhccccCCCCCCCccchH--HHHHHcCCCC
Confidence 344568999999999999998643 235678899999999999999999865321 1100 000 000000 000
Q ss_pred ChHHHHHHHHHHHhcCccccCCCCChHHHHHH--------hcCCcEEEEEeCCCCh--HHHHHHHhccCCCCCCCEEEEE
Q 002220 255 GLVYLRDRVVSEIFQEDIKIGTPYLPDYIVER--------LNRMKVLTVLDDVNKV--RQLHYLACVLDQFGPGSRIIIT 324 (951)
Q Consensus 255 ~~~~l~~~il~~l~~~~~~~~~~~~~~~l~~~--------l~~~~~LlVlDdv~~~--~~~~~l~~~~~~~~~gs~IlvT 324 (951)
++.. + .... ....+.+++. ..+++-++|+|+++.. ..++.+...+....+.+.+|++
T Consensus 89 dv~~--------i----dgas-~~~vddIr~l~e~~~~~p~~~~~KVvIIDEa~~Ls~~a~naLLK~LEepp~~~vfI~~ 155 (563)
T PRK06647 89 DVIE--------I----DGAS-NTSVQDVRQIKEEIMFPPASSRYRVYIIDEVHMLSNSAFNALLKTIEEPPPYIVFIFA 155 (563)
T ss_pred CeEE--------e----cCcc-cCCHHHHHHHHHHHHhchhcCCCEEEEEEChhhcCHHHHHHHHHhhccCCCCEEEEEe
Confidence 0000 0 0000 0000222211 1345668999999644 4467777666655566666666
Q ss_pred eCC-chhhhhcCCCccceEEcCCCChhhhHHHHhhhhccCCCCChhHHHHHHHHHHHcCCCchHH
Q 002220 325 TRD-KRILDDFGVCDTDIYEVNKLRFHEALVLFSNFAFKENQCPGDLLALLERVLKYANGNPLAL 388 (951)
Q Consensus 325 tR~-~~v~~~~~~~~~~~~~l~~L~~~~a~~Lf~~~~~~~~~~~~~~~~~~~~i~~~~~g~PLal 388 (951)
|.+ ..+..... .....++..+++.++..+.+.+.+....... ..+.+..|++.++|.+-.+
T Consensus 156 tte~~kL~~tI~-SRc~~~~f~~l~~~el~~~L~~i~~~egi~i--d~eAl~lLa~~s~GdlR~a 217 (563)
T PRK06647 156 TTEVHKLPATIK-SRCQHFNFRLLSLEKIYNMLKKVCLEDQIKY--EDEALKWIAYKSTGSVRDA 217 (563)
T ss_pred cCChHHhHHHHH-HhceEEEecCCCHHHHHHHHHHHHHHcCCCC--CHHHHHHHHHHcCCCHHHH
Confidence 543 33322211 0116799999999999988887764333221 1256677888899977543
No 158
>PRK05563 DNA polymerase III subunits gamma and tau; Validated
Probab=97.73 E-value=0.00096 Score=77.42 Aligned_cols=192 Identities=14% Similarity=0.087 Sum_probs=105.1
Q ss_pred CCCCCCcccchhhHHHHHHhhccCCCCcEEEEEEecCCChhHHHHHHHHHHhhccccceeecccccchhcCCCChHHHHH
Q 002220 182 STYSDGFVGLNSRIQKIKSLLCIGLPDFRTIGIWGMGGIGKTTLAGAVFKLISREFEGKCFMPNVREESENGGGLVYLRD 261 (951)
Q Consensus 182 ~~~~~~~vGr~~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~l~~ 261 (951)
|...++++|.+...+.|...+..+. -.+.+.++|+.|+||||+|+.++..+-..-.... . ..+.-...+
T Consensus 12 P~~f~~viGq~~v~~~L~~~i~~~~-~~hayLf~Gp~GtGKTt~Ak~lAkal~c~~~~~~------~----pC~~C~~C~ 80 (559)
T PRK05563 12 PQTFEDVVGQEHITKTLKNAIKQGK-ISHAYLFSGPRGTGKTSAAKIFAKAVNCLNPPDG------E----PCNECEICK 80 (559)
T ss_pred CCcHHhccCcHHHHHHHHHHHHcCC-CCeEEEEECCCCCCHHHHHHHHHHHhcCCCCCCC------C----CCCccHHHH
Confidence 4456789999999999999986432 3567788999999999999999875421100000 0 000000001
Q ss_pred HHHHHHhcCcccc-----CCCCChHHHHHH-----hcCCcEEEEEeCCCCh--HHHHHHHhccCCCCCCCEEEEEe-CCc
Q 002220 262 RVVSEIFQEDIKI-----GTPYLPDYIVER-----LNRMKVLTVLDDVNKV--RQLHYLACVLDQFGPGSRIIITT-RDK 328 (951)
Q Consensus 262 ~il~~l~~~~~~~-----~~~~~~~~l~~~-----l~~~~~LlVlDdv~~~--~~~~~l~~~~~~~~~gs~IlvTt-R~~ 328 (951)
.+.......-... ...+....+.+. ..++.-++|+|+++.. .....+...+......+.+|++| ...
T Consensus 81 ~i~~g~~~dv~eidaas~~~vd~ir~i~~~v~~~p~~~~~kViIIDE~~~Lt~~a~naLLKtLEepp~~~ifIlatt~~~ 160 (559)
T PRK05563 81 AITNGSLMDVIEIDAASNNGVDEIRDIRDKVKYAPSEAKYKVYIIDEVHMLSTGAFNALLKTLEEPPAHVIFILATTEPH 160 (559)
T ss_pred HHhcCCCCCeEEeeccccCCHHHHHHHHHHHhhCcccCCeEEEEEECcccCCHHHHHHHHHHhcCCCCCeEEEEEeCChh
Confidence 1100000000000 000000112222 1345668899999744 44666766655444455555444 433
Q ss_pred hhhhhcCCCccceEEcCCCChhhhHHHHhhhhccCCCCChhHHHHHHHHHHHcCCCchH
Q 002220 329 RILDDFGVCDTDIYEVNKLRFHEALVLFSNFAFKENQCPGDLLALLERVLKYANGNPLA 387 (951)
Q Consensus 329 ~v~~~~~~~~~~~~~l~~L~~~~a~~Lf~~~~~~~~~~~~~~~~~~~~i~~~~~g~PLa 387 (951)
.+..... .....++..+++.++..+.+...+-......+ .+.+..|++.++|.+..
T Consensus 161 ki~~tI~-SRc~~~~f~~~~~~ei~~~L~~i~~~egi~i~--~~al~~ia~~s~G~~R~ 216 (559)
T PRK05563 161 KIPATIL-SRCQRFDFKRISVEDIVERLKYILDKEGIEYE--DEALRLIARAAEGGMRD 216 (559)
T ss_pred hCcHHHH-hHheEEecCCCCHHHHHHHHHHHHHHcCCCCC--HHHHHHHHHHcCCCHHH
Confidence 3332211 01267899999999999888876643222111 24567788888887653
No 159
>cd01128 rho_factor Transcription termination factor rho is a bacterial ATP-dependent RNA/DNA helicase. It is a homohexamer. Each monomer consists of an N-terminal domain of the OB fold, which is responsible for binding to cysteine rich nucleotides. This alignment is of the C-terminal ATP binding domain.
Probab=97.72 E-value=4e-05 Score=78.62 Aligned_cols=92 Identities=15% Similarity=0.109 Sum_probs=58.8
Q ss_pred CcEEEEEEecCCChhHHHHHHHHHHhhc-cccceeecccccchhcCCCChHHHHHHHHHHHhcCccccCCCC------Ch
Q 002220 208 DFRTIGIWGMGGIGKTTLAGAVFKLISR-EFEGKCFMPNVREESENGGGLVYLRDRVVSEIFQEDIKIGTPY------LP 280 (951)
Q Consensus 208 ~~~vv~I~G~gGiGKTtLA~~~~~~~~~-~f~~~~~~~~~~~~~~~~~~~~~l~~~il~~l~~~~~~~~~~~------~~ 280 (951)
.-..++|.|.+|+|||||++++++.+.. +|+..+|+..+.+. ..++..+++.+...+.......+... ..
T Consensus 15 ~Gqr~~I~G~~G~GKTTLlr~I~n~l~~~~fdv~~~v~vI~er---~~ev~el~~~I~~~~v~~~~~~~~~~~~~~~~~~ 91 (249)
T cd01128 15 KGQRGLIVAPPKAGKTTLLQSIANAITKNHPEVYLIVLLIDER---PEEVTDMQRSVKGEVIASTFDEPPERHVQVAEMV 91 (249)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhccccccCCeEEEEEEccCC---CccHHHHHHHhccEEEEecCCCCHHHHHHHHHHH
Confidence 3468899999999999999999997643 68888898655432 35677777777333322222211110 01
Q ss_pred -HHHHH-HhcCCcEEEEEeCCCCh
Q 002220 281 -DYIVE-RLNRMKVLTVLDDVNKV 302 (951)
Q Consensus 281 -~~l~~-~l~~~~~LlVlDdv~~~ 302 (951)
+..+. +-+++++++++|++...
T Consensus 92 ~~~a~~~~~~G~~vll~iDei~r~ 115 (249)
T cd01128 92 LEKAKRLVEHGKDVVILLDSITRL 115 (249)
T ss_pred HHHHHHHHHCCCCEEEEEECHHHh
Confidence 11121 12478999999998544
No 160
>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B ....
Probab=97.70 E-value=4.6e-05 Score=54.48 Aligned_cols=42 Identities=38% Similarity=0.556 Sum_probs=34.6
Q ss_pred CCCCEEEccCCCCcccchhhcCCCCCCEEeeCCCCCCCcCCCc
Q 002220 867 SSLEVLDLSGSKIEILPTSIGQLSRLRQLNLLDCNMLQSIPEL 909 (951)
Q Consensus 867 ~~L~~L~L~~n~l~~l~~~l~~l~~L~~L~L~~~~~l~~lp~~ 909 (951)
++|++|++++|+|+.+|..+.+|++|+.|++++|+ +++++.+
T Consensus 1 ~~L~~L~l~~N~i~~l~~~l~~l~~L~~L~l~~N~-i~~i~~l 42 (44)
T PF12799_consen 1 KNLEELDLSNNQITDLPPELSNLPNLETLNLSNNP-ISDISPL 42 (44)
T ss_dssp TT-SEEEETSSS-SSHGGHGTTCTTSSEEEETSSC-CSBEGGG
T ss_pred CcceEEEccCCCCcccCchHhCCCCCCEEEecCCC-CCCCcCC
Confidence 57999999999999999889999999999999985 5565543
No 161
>PF00004 AAA: ATPase family associated with various cellular activities (AAA); InterPro: IPR003959 AAA ATPases (ATPases Associated with diverse cellular Activities) form a large protein family and play a number of roles in the cell including cell-cycle regulation, protein proteolysis and disaggregation, organelle biogenesis and intracellular transport. Some of them function as molecular chaperones, subunits of proteolytic complexes or independent proteases (FtsH, Lon). They also act as DNA helicases and transcription factors []. AAA ATPases belong to the AAA+ superfamily of ringshaped P-loop NTPases, which act via the energy-dependent unfolding of macromolecules [, ]. There are six major clades of AAA domains (proteasome subunits, metalloproteases, domains D1 and D2 of ATPases with two AAA domains, the MSP1/katanin/spastin group and BCS1 and it homologues), as well as a number of deeply branching minor clades []. They assemble into oligomeric assemblies (often hexamers) that form a ring-shaped structure with a central pore. These proteins produce a molecular motor that couples ATP binding and hydrolysis to changes in conformational states that act upon a target substrate, either translocating or remodelling it []. They are found in all living organisms and share the common feature of the presence of a highly conserved AAA domain called the AAA module. This domain is responsible for ATP binding and hydrolysis. It contains 200-250 residues, among them there are two classical motifs, Walker A (GX4GKT) and Walker B (HyDE) []. The functional variety seen between AAA ATPases is in part due to their extensive number of accessory domains and factors, and to their variable organisation within oligomeric assemblies, in addition to changes in key functional residues within the ATPase domain itself. More information about these proteins can be found at Protein of the Month: AAA ATPases [].; GO: 0005524 ATP binding; PDB: 3H4M_A 1NSF_A 1D2N_A 1HQY_E 1DO0_E 1DO2_C 1G4B_E 1HT1_F 1G4A_F 1HT2_G ....
Probab=97.66 E-value=0.0003 Score=65.28 Aligned_cols=24 Identities=42% Similarity=0.470 Sum_probs=21.5
Q ss_pred EEEEecCCChhHHHHHHHHHHhhc
Q 002220 212 IGIWGMGGIGKTTLAGAVFKLISR 235 (951)
Q Consensus 212 v~I~G~gGiGKTtLA~~~~~~~~~ 235 (951)
|.|+|++|+||||+|+.+++....
T Consensus 1 ill~G~~G~GKT~l~~~la~~l~~ 24 (132)
T PF00004_consen 1 ILLHGPPGTGKTTLARALAQYLGF 24 (132)
T ss_dssp EEEESSTTSSHHHHHHHHHHHTTS
T ss_pred CEEECcCCCCeeHHHHHHHhhccc
Confidence 579999999999999999998753
No 162
>CHL00095 clpC Clp protease ATP binding subunit
Probab=97.62 E-value=0.00042 Score=84.75 Aligned_cols=65 Identities=18% Similarity=0.231 Sum_probs=46.8
Q ss_pred HHHHHHHHHHhhccccccCCCCCCcccchhhHHHHHHhhccCCCCcEEEEEEecCCChhHHHHHHHHHHhh
Q 002220 164 LVDVIVKDILKKLENVTASTYSDGFVGLNSRIQKIKSLLCIGLPDFRTIGIWGMGGIGKTTLAGAVFKLIS 234 (951)
Q Consensus 164 ~i~~i~~~i~~~~~~~~~~~~~~~~vGr~~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~~~~~~~ 234 (951)
.+++...++..+-+ ...-+.++||+++++++.+.|.... ..-+.++|.+|+|||++|+.++.++.
T Consensus 161 ~l~~~~~~l~~~a~----~~~~~~~igr~~ei~~~~~~L~r~~--~~n~lL~G~pGvGKTal~~~la~~i~ 225 (821)
T CHL00095 161 TLEEFGTNLTKEAI----DGNLDPVIGREKEIERVIQILGRRT--KNNPILIGEPGVGKTAIAEGLAQRIV 225 (821)
T ss_pred HHHHHHHHHHHHHH----cCCCCCCCCcHHHHHHHHHHHcccc--cCCeEEECCCCCCHHHHHHHHHHHHH
Confidence 45555555544431 1223468999999999999996432 23456999999999999999998764
No 163
>PRK14965 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.61 E-value=0.00087 Score=78.18 Aligned_cols=190 Identities=15% Similarity=0.169 Sum_probs=104.9
Q ss_pred CCCCCCcccchhhHHHHHHhhccCCCCcEEEEEEecCCChhHHHHHHHHHHhhcc--ccc----eeecc---------cc
Q 002220 182 STYSDGFVGLNSRIQKIKSLLCIGLPDFRTIGIWGMGGIGKTTLAGAVFKLISRE--FEG----KCFMP---------NV 246 (951)
Q Consensus 182 ~~~~~~~vGr~~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~~~~~~~~~--f~~----~~~~~---------~~ 246 (951)
|...+++||.+...+.|...+..+ .-.+.+.++|+.|+||||+|+.+++.+-.. ... .|-.+ ++
T Consensus 12 P~~f~~iiGq~~v~~~L~~~i~~~-~~~hayLf~Gp~G~GKtt~A~~lak~l~c~~~~~~~~c~~c~~c~~i~~g~~~d~ 90 (576)
T PRK14965 12 PQTFSDLTGQEHVSRTLQNAIDTG-RVAHAFLFTGARGVGKTSTARILAKALNCEQGLTAEPCNVCPPCVEITEGRSVDV 90 (576)
T ss_pred CCCHHHccCcHHHHHHHHHHHHcC-CCCeEEEEECCCCCCHHHHHHHHHHhhcCCCCCCCCCCCccHHHHHHhcCCCCCe
Confidence 345578999999999999988543 234667899999999999999999864311 100 00000 00
Q ss_pred cchh-cCCCChHHHHHHHHHHHhcCccccCCCCChHHHHHHhcCCcEEEEEeCCCCh--HHHHHHHhccCCCCCCCEEEE
Q 002220 247 REES-ENGGGLVYLRDRVVSEIFQEDIKIGTPYLPDYIVERLNRMKVLTVLDDVNKV--RQLHYLACVLDQFGPGSRIII 323 (951)
Q Consensus 247 ~~~~-~~~~~~~~l~~~il~~l~~~~~~~~~~~~~~~l~~~l~~~~~LlVlDdv~~~--~~~~~l~~~~~~~~~gs~Ilv 323 (951)
.+.. ....++..+ +.+...+... -..+++-++|+|+++.. ...+.+...+....+.+.+|+
T Consensus 91 ~eid~~s~~~v~~i-r~l~~~~~~~---------------p~~~~~KVvIIdev~~Lt~~a~naLLk~LEepp~~~~fIl 154 (576)
T PRK14965 91 FEIDGASNTGVDDI-RELRENVKYL---------------PSRSRYKIFIIDEVHMLSTNAFNALLKTLEEPPPHVKFIF 154 (576)
T ss_pred eeeeccCccCHHHH-HHHHHHHHhc---------------cccCCceEEEEEChhhCCHHHHHHHHHHHHcCCCCeEEEE
Confidence 0000 000111111 1111111000 01234557889999644 346666666655455666665
Q ss_pred Ee-CCchhhhhcCCCccceEEcCCCChhhhHHHHhhhhccCCCCChhHHHHHHHHHHHcCCCc-hHHHHH
Q 002220 324 TT-RDKRILDDFGVCDTDIYEVNKLRFHEALVLFSNFAFKENQCPGDLLALLERVLKYANGNP-LALRVL 391 (951)
Q Consensus 324 Tt-R~~~v~~~~~~~~~~~~~l~~L~~~~a~~Lf~~~~~~~~~~~~~~~~~~~~i~~~~~g~P-Lal~~~ 391 (951)
+| ....+..... .....+++.+++.++....+...+-...... ..+.+..|++.++|.. .|+..+
T Consensus 155 ~t~~~~kl~~tI~-SRc~~~~f~~l~~~~i~~~L~~i~~~egi~i--~~~al~~la~~a~G~lr~al~~L 221 (576)
T PRK14965 155 ATTEPHKVPITIL-SRCQRFDFRRIPLQKIVDRLRYIADQEGISI--SDAALALVARKGDGSMRDSLSTL 221 (576)
T ss_pred EeCChhhhhHHHH-HhhhhhhcCCCCHHHHHHHHHHHHHHhCCCC--CHHHHHHHHHHcCCCHHHHHHHH
Confidence 55 4444433221 0126789999999998888876553222111 1245677888888865 344433
No 164
>PRK14086 dnaA chromosomal replication initiation protein; Provisional
Probab=97.61 E-value=0.0011 Score=75.65 Aligned_cols=152 Identities=16% Similarity=0.223 Sum_probs=87.2
Q ss_pred EEEEEEecCCChhHHHHHHHHHHhhcccc--ceeecccccchhcCCCChHHHHHHHHHHHhcCccccCCCCChHHHHHHh
Q 002220 210 RTIGIWGMGGIGKTTLAGAVFKLISREFE--GKCFMPNVREESENGGGLVYLRDRVVSEIFQEDIKIGTPYLPDYIVERL 287 (951)
Q Consensus 210 ~vv~I~G~gGiGKTtLA~~~~~~~~~~f~--~~~~~~~~~~~~~~~~~~~~l~~~il~~l~~~~~~~~~~~~~~~l~~~l 287 (951)
..+.|+|..|.|||.|++++++.....+. .++|+. ...+...+...+... ..+.+++.+
T Consensus 315 NpL~LyG~sGsGKTHLL~AIa~~a~~~~~g~~V~Yit-----------aeef~~el~~al~~~--------~~~~f~~~y 375 (617)
T PRK14086 315 NPLFIYGESGLGKTHLLHAIGHYARRLYPGTRVRYVS-----------SEEFTNEFINSIRDG--------KGDSFRRRY 375 (617)
T ss_pred CcEEEECCCCCCHHHHHHHHHHHHHHhCCCCeEEEee-----------HHHHHHHHHHHHHhc--------cHHHHHHHh
Confidence 45899999999999999999997765432 234543 122233333332211 113344444
Q ss_pred cCCcEEEEEeCCCCh---HHH-HHHHhccCC-CCCCCEEEEEeCCc---------hhhhhcCCCccceEEcCCCChhhhH
Q 002220 288 NRMKVLTVLDDVNKV---RQL-HYLACVLDQ-FGPGSRIIITTRDK---------RILDDFGVCDTDIYEVNKLRFHEAL 353 (951)
Q Consensus 288 ~~~~~LlVlDdv~~~---~~~-~~l~~~~~~-~~~gs~IlvTtR~~---------~v~~~~~~~~~~~~~l~~L~~~~a~ 353 (951)
++ -=+|||||+... ..+ +.+...+.. ...|..|||||+.. .+.+.+... -+++|+..+.+.-.
T Consensus 376 ~~-~DLLlIDDIq~l~gke~tqeeLF~l~N~l~e~gk~IIITSd~~P~eL~~l~~rL~SRf~~G--Lvv~I~~PD~EtR~ 452 (617)
T PRK14086 376 RE-MDILLVDDIQFLEDKESTQEEFFHTFNTLHNANKQIVLSSDRPPKQLVTLEDRLRNRFEWG--LITDVQPPELETRI 452 (617)
T ss_pred hc-CCEEEEehhccccCCHHHHHHHHHHHHHHHhcCCCEEEecCCChHhhhhccHHHHhhhhcC--ceEEcCCCCHHHHH
Confidence 43 347888999533 112 222222211 13356688888753 223333333 67999999999999
Q ss_pred HHHhhhhccCCCCChhHHHHHHHHHHHcCCCc
Q 002220 354 VLFSNFAFKENQCPGDLLALLERVLKYANGNP 385 (951)
Q Consensus 354 ~Lf~~~~~~~~~~~~~~~~~~~~i~~~~~g~P 385 (951)
+++.+++-...... -.++++-|++.+.+..
T Consensus 453 aIL~kka~~r~l~l--~~eVi~yLa~r~~rnv 482 (617)
T PRK14086 453 AILRKKAVQEQLNA--PPEVLEFIASRISRNI 482 (617)
T ss_pred HHHHHHHHhcCCCC--CHHHHHHHHHhccCCH
Confidence 99998874332211 1255666666666553
No 165
>TIGR00767 rho transcription termination factor Rho. Members of this family differ in the specificity of RNA binding.
Probab=97.60 E-value=9.6e-05 Score=79.40 Aligned_cols=93 Identities=15% Similarity=0.116 Sum_probs=62.0
Q ss_pred cEEEEEEecCCChhHHHHHHHHHHhhcc-ccceeecccccchhcCCCChHHHHHHHHHHHhcCccccCCCCC------h-
Q 002220 209 FRTIGIWGMGGIGKTTLAGAVFKLISRE-FEGKCFMPNVREESENGGGLVYLRDRVVSEIFQEDIKIGTPYL------P- 280 (951)
Q Consensus 209 ~~vv~I~G~gGiGKTtLA~~~~~~~~~~-f~~~~~~~~~~~~~~~~~~~~~l~~~il~~l~~~~~~~~~~~~------~- 280 (951)
-..++|+|++|.|||||++.+++.+..+ |+..+|+..+++. ...+..+++.+...+............ .
T Consensus 168 Gq~~~IvG~~g~GKTtL~~~i~~~I~~nhfdv~v~VlLIgER---~~EVtDLqrsIlg~Vvast~d~p~~~~~~va~~v~ 244 (415)
T TIGR00767 168 GQRGLIVAPPKAGKTVLLQKIAQAITRNHPEVELIVLLIDER---PEEVTDMQRSVKGEVVASTFDEPASRHVQVAEMVI 244 (415)
T ss_pred CCEEEEECCCCCChhHHHHHHHHhhcccCCceEEEEEEcCCC---CccHHHHHHHhhceEEEecCCCChHHHHHHHHHHH
Confidence 4679999999999999999999977655 8888888766432 356788888886544333322211110 0
Q ss_pred HHHHH-HhcCCcEEEEEeCCCChHH
Q 002220 281 DYIVE-RLNRMKVLTVLDDVNKVRQ 304 (951)
Q Consensus 281 ~~l~~-~l~~~~~LlVlDdv~~~~~ 304 (951)
+..+. .-++++++|++|++.....
T Consensus 245 e~Ae~~~~~GkdVVLlIDEitR~ar 269 (415)
T TIGR00767 245 EKAKRLVEHKKDVVILLDSITRLAR 269 (415)
T ss_pred HHHHHHHHcCCCeEEEEEChhHHHH
Confidence 11111 1357999999999965443
No 166
>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]
Probab=97.60 E-value=2.5e-05 Score=76.98 Aligned_cols=137 Identities=20% Similarity=0.207 Sum_probs=61.9
Q ss_pred ccCCCCCCEEeccCCCCCCccch----hcccCCCCcEEEcccCCCcccCc-----c---------ccCCCCCcEEeeccC
Q 002220 765 ICKLKSLGSLLLAFCSNLEGFPE----ILEKMELLETLDLERTGVKELPP-----S---------FENLQGLRQLSLIGC 826 (951)
Q Consensus 765 ~~~l~~L~~L~l~~~~~~~~~~~----~l~~l~~L~~L~l~~n~i~~l~~-----~---------~~~l~~L~~L~l~~~ 826 (951)
+.+|+.|+..+|++|......|+ .+..-+.|.+|.+++|.+..+.. . ..+-|.|++.....|
T Consensus 88 Llkcp~l~~v~LSDNAfg~~~~e~L~d~is~~t~l~HL~l~NnGlGp~aG~rigkal~~la~nKKaa~kp~Le~vicgrN 167 (388)
T COG5238 88 LLKCPRLQKVDLSDNAFGSEFPEELGDLISSSTDLVHLKLNNNGLGPIAGGRIGKALFHLAYNKKAADKPKLEVVICGRN 167 (388)
T ss_pred HhcCCcceeeeccccccCcccchHHHHHHhcCCCceeEEeecCCCCccchhHHHHHHHHHHHHhhhccCCCceEEEeccc
Confidence 44555566666655554443332 23344555556665555542211 0 112345555555544
Q ss_pred CCCccCCcccCCcCCCCCCCCEEeccCCCCCC------cCccCCCCCCCCEEEccCCCCcc-----cchhhcCCCCCCEE
Q 002220 827 SELKCSGWVLPTRISKLSSLERLQLSGCEIKE------IPEDIDCLSSLEVLDLSGSKIEI-----LPTSIGQLSRLRQL 895 (951)
Q Consensus 827 ~~~~~~~~~~~~~~~~l~~L~~L~L~~~~l~~------l~~~l~~l~~L~~L~L~~n~l~~-----l~~~l~~l~~L~~L 895 (951)
.....+.......+..-.+|+.+.+..|.|.. +-..+..+.+|+.|+|.+|-++. +...+...+.|+.|
T Consensus 168 Rlengs~~~~a~~l~sh~~lk~vki~qNgIrpegv~~L~~~gl~y~~~LevLDlqDNtft~~gS~~La~al~~W~~lrEL 247 (388)
T COG5238 168 RLENGSKELSAALLESHENLKEVKIQQNGIRPEGVTMLAFLGLFYSHSLEVLDLQDNTFTLEGSRYLADALCEWNLLREL 247 (388)
T ss_pred hhccCcHHHHHHHHHhhcCceeEEeeecCcCcchhHHHHHHHHHHhCcceeeeccccchhhhhHHHHHHHhcccchhhhc
Confidence 43332110011112222355556665555542 11223345566666666665541 22333444556666
Q ss_pred eeCCCC
Q 002220 896 NLLDCN 901 (951)
Q Consensus 896 ~L~~~~ 901 (951)
.+.+|-
T Consensus 248 ~lnDCl 253 (388)
T COG5238 248 RLNDCL 253 (388)
T ss_pred cccchh
Confidence 666653
No 167
>COG0466 Lon ATP-dependent Lon protease, bacterial type [Posttranslational modification, protein turnover, chaperones]
Probab=97.59 E-value=0.0032 Score=71.46 Aligned_cols=154 Identities=22% Similarity=0.298 Sum_probs=92.1
Q ss_pred CCCcccchhhHHHHHHhhcc----CCCCcEEEEEEecCCChhHHHHHHHHHHhhccccceeecccccchhcCCCChHHHH
Q 002220 185 SDGFVGLNSRIQKIKSLLCI----GLPDFRTIGIWGMGGIGKTTLAGAVFKLISREFEGKCFMPNVREESENGGGLVYLR 260 (951)
Q Consensus 185 ~~~~vGr~~~~~~l~~~L~~----~~~~~~vv~I~G~gGiGKTtLA~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~l~ 260 (951)
+.+.+|.++-.++|.+.|.. ..-.-.+++++|++|+|||.|++.+++.....|-. +-+-.+++.++
T Consensus 322 d~dHYGLekVKeRIlEyLAV~~l~~~~kGpILcLVGPPGVGKTSLgkSIA~al~RkfvR-~sLGGvrDEAE--------- 391 (782)
T COG0466 322 DKDHYGLEKVKERILEYLAVQKLTKKLKGPILCLVGPPGVGKTSLGKSIAKALGRKFVR-ISLGGVRDEAE--------- 391 (782)
T ss_pred cccccCchhHHHHHHHHHHHHHHhccCCCcEEEEECCCCCCchhHHHHHHHHhCCCEEE-EecCccccHHH---------
Confidence 45789999999999999862 22344799999999999999999999988777742 22334443332
Q ss_pred HHHHHHHhcCccccCCCCChHHHHHHh---cCCcEEEEEeCCCChHH------HHHHHhccCCCC-------------CC
Q 002220 261 DRVVSEIFQEDIKIGTPYLPDYIVERL---NRMKVLTVLDDVNKVRQ------LHYLACVLDQFG-------------PG 318 (951)
Q Consensus 261 ~~il~~l~~~~~~~~~~~~~~~l~~~l---~~~~~LlVlDdv~~~~~------~~~l~~~~~~~~-------------~g 318 (951)
+.+.....-. .....+.+.+ +.+.=+++||.++.... -.+++..+.+-. .=
T Consensus 392 ------IRGHRRTYIG-amPGrIiQ~mkka~~~NPv~LLDEIDKm~ss~rGDPaSALLEVLDPEQN~~F~DhYLev~yDL 464 (782)
T COG0466 392 ------IRGHRRTYIG-AMPGKIIQGMKKAGVKNPVFLLDEIDKMGSSFRGDPASALLEVLDPEQNNTFSDHYLEVPYDL 464 (782)
T ss_pred ------hccccccccc-cCChHHHHHHHHhCCcCCeEEeechhhccCCCCCChHHHHHhhcCHhhcCchhhccccCccch
Confidence 1121111111 1112222222 44677999999864321 223333332111 11
Q ss_pred CEE-EEEeCCc-h-----hhhhcCCCccceEEcCCCChhhhHHHHhhhh
Q 002220 319 SRI-IITTRDK-R-----ILDDFGVCDTDIYEVNKLRFHEALVLFSNFA 360 (951)
Q Consensus 319 s~I-lvTtR~~-~-----v~~~~~~~~~~~~~l~~L~~~~a~~Lf~~~~ 360 (951)
|.| -|||-+. + +..+| .++++.+-+++|-.++-.++.
T Consensus 465 S~VmFiaTANsl~tIP~PLlDRM-----EiI~lsgYt~~EKl~IAk~~L 508 (782)
T COG0466 465 SKVMFIATANSLDTIPAPLLDRM-----EVIRLSGYTEDEKLEIAKRHL 508 (782)
T ss_pred hheEEEeecCccccCChHHhcce-----eeeeecCCChHHHHHHHHHhc
Confidence 333 3444332 2 23333 789999999999888877765
No 168
>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]
Probab=97.59 E-value=2.7e-05 Score=91.61 Aligned_cols=153 Identities=26% Similarity=0.307 Sum_probs=102.6
Q ss_pred CCCCcEEeccccccccc-ccccc-cCCCCCCEEeccCCCCC-CccchhcccCCCCcEEEcccCCCcccCccccCCCCCcE
Q 002220 744 LTNLETLDLRLCERLKR-VSTSI-CKLKSLGSLLLAFCSNL-EGFPEILEKMELLETLDLERTGVKELPPSFENLQGLRQ 820 (951)
Q Consensus 744 l~~L~~L~Ls~~~~~~~-~~~~~-~~l~~L~~L~l~~~~~~-~~~~~~l~~l~~L~~L~l~~n~i~~l~~~~~~l~~L~~ 820 (951)
-.+|++|++++...... -+..+ .-||+|++|.+.+-... ..+.....++|+|..||+++++++.+ .+++.+++|+.
T Consensus 121 r~nL~~LdI~G~~~~s~~W~~kig~~LPsL~sL~i~~~~~~~~dF~~lc~sFpNL~sLDIS~TnI~nl-~GIS~LknLq~ 199 (699)
T KOG3665|consen 121 RQNLQHLDISGSELFSNGWPKKIGTMLPSLRSLVISGRQFDNDDFSQLCASFPNLRSLDISGTNISNL-SGISRLKNLQV 199 (699)
T ss_pred HHhhhhcCccccchhhccHHHHHhhhCcccceEEecCceecchhHHHHhhccCccceeecCCCCccCc-HHHhccccHHH
Confidence 35788888877543322 22223 35788888888874432 23455677889999999999999887 67889999999
Q ss_pred EeeccCCCCccCCcccCCcCCCCCCCCEEeccCCCCCCcC-------ccCCCCCCCCEEEccCCCCc--ccchhhcCCCC
Q 002220 821 LSLIGCSELKCSGWVLPTRISKLSSLERLQLSGCEIKEIP-------EDIDCLSSLEVLDLSGSKIE--ILPTSIGQLSR 891 (951)
Q Consensus 821 L~l~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~l~~l~-------~~l~~l~~L~~L~L~~n~l~--~l~~~l~~l~~ 891 (951)
|.+.+-...... .-..+.++.+|+.||+|.......+ +.-..+|+|+.||.|++.+. .+...+..-|+
T Consensus 200 L~mrnLe~e~~~---~l~~LF~L~~L~vLDIS~~~~~~~~~ii~qYlec~~~LpeLrfLDcSgTdi~~~~le~ll~sH~~ 276 (699)
T KOG3665|consen 200 LSMRNLEFESYQ---DLIDLFNLKKLRVLDISRDKNNDDTKIIEQYLECGMVLPELRFLDCSGTDINEEILEELLNSHPN 276 (699)
T ss_pred HhccCCCCCchh---hHHHHhcccCCCeeeccccccccchHHHHHHHHhcccCccccEEecCCcchhHHHHHHHHHhCcc
Confidence 988776555421 1123567889999999887655433 22345889999999988776 23334455666
Q ss_pred CCEEeeCCC
Q 002220 892 LRQLNLLDC 900 (951)
Q Consensus 892 L~~L~L~~~ 900 (951)
|+.+..-+|
T Consensus 277 L~~i~~~~~ 285 (699)
T KOG3665|consen 277 LQQIAALDC 285 (699)
T ss_pred Hhhhhhhhh
Confidence 766665543
No 169
>PRK07952 DNA replication protein DnaC; Validated
Probab=97.58 E-value=0.0011 Score=67.66 Aligned_cols=35 Identities=20% Similarity=0.201 Sum_probs=28.2
Q ss_pred cEEEEEEecCCChhHHHHHHHHHHhhccccceeec
Q 002220 209 FRTIGIWGMGGIGKTTLAGAVFKLISREFEGKCFM 243 (951)
Q Consensus 209 ~~vv~I~G~gGiGKTtLA~~~~~~~~~~f~~~~~~ 243 (951)
...+.++|.+|+|||+||.++++.+...-..++++
T Consensus 99 ~~~~~l~G~~GtGKThLa~aia~~l~~~g~~v~~i 133 (244)
T PRK07952 99 IASFIFSGKPGTGKNHLAAAICNELLLRGKSVLII 133 (244)
T ss_pred CceEEEECCCCCCHHHHHHHHHHHHHhcCCeEEEE
Confidence 45789999999999999999999776554455555
No 170
>PF05673 DUF815: Protein of unknown function (DUF815); InterPro: IPR008533 This domain consists of several bacterial proteins of unknown function.
Probab=97.57 E-value=0.0031 Score=63.10 Aligned_cols=55 Identities=16% Similarity=0.280 Sum_probs=40.9
Q ss_pred CCCCCcccchhhHHHHHHhhc--cCCCCcEEEEEEecCCChhHHHHHHHHHHhhccc
Q 002220 183 TYSDGFVGLNSRIQKIKSLLC--IGLPDFRTIGIWGMGGIGKTTLAGAVFKLISREF 237 (951)
Q Consensus 183 ~~~~~~vGr~~~~~~l~~~L~--~~~~~~~vv~I~G~gGiGKTtLA~~~~~~~~~~f 237 (951)
...+.++|.|.+.+.|.+-.. .......-+.+||..|.|||++++++.+.+..+-
T Consensus 24 ~~l~~L~Gie~Qk~~l~~Nt~~Fl~G~pannvLL~G~rGtGKSSlVkall~~y~~~G 80 (249)
T PF05673_consen 24 IRLDDLIGIERQKEALIENTEQFLQGLPANNVLLWGARGTGKSSLVKALLNEYADQG 80 (249)
T ss_pred CCHHHhcCHHHHHHHHHHHHHHHHcCCCCcceEEecCCCCCHHHHHHHHHHHHhhcC
Confidence 445679999999988865332 1222355677899999999999999998776543
No 171
>PRK12377 putative replication protein; Provisional
Probab=97.57 E-value=0.0017 Score=66.65 Aligned_cols=35 Identities=20% Similarity=0.155 Sum_probs=28.8
Q ss_pred cEEEEEEecCCChhHHHHHHHHHHhhccccceeec
Q 002220 209 FRTIGIWGMGGIGKTTLAGAVFKLISREFEGKCFM 243 (951)
Q Consensus 209 ~~vv~I~G~gGiGKTtLA~~~~~~~~~~f~~~~~~ 243 (951)
...+.++|.+|+|||+||.++++.+......+.|+
T Consensus 101 ~~~l~l~G~~GtGKThLa~AIa~~l~~~g~~v~~i 135 (248)
T PRK12377 101 CTNFVFSGKPGTGKNHLAAAIGNRLLAKGRSVIVV 135 (248)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHHHHcCCCeEEE
Confidence 46789999999999999999999876655555565
No 172
>CHL00176 ftsH cell division protein; Validated
Probab=97.55 E-value=0.00099 Score=77.95 Aligned_cols=174 Identities=18% Similarity=0.148 Sum_probs=96.6
Q ss_pred CCCCcccchhhHHHHHHhhc---c-------CCCCcEEEEEEecCCChhHHHHHHHHHHhhccccceeecccccchhcCC
Q 002220 184 YSDGFVGLNSRIQKIKSLLC---I-------GLPDFRTIGIWGMGGIGKTTLAGAVFKLISREFEGKCFMPNVREESENG 253 (951)
Q Consensus 184 ~~~~~vGr~~~~~~l~~~L~---~-------~~~~~~vv~I~G~gGiGKTtLA~~~~~~~~~~f~~~~~~~~~~~~~~~~ 253 (951)
..++++|.++..+++.+.+. . +....+-|.++|++|+|||++|++++......|- .+. .
T Consensus 181 ~f~dv~G~~~~k~~l~eiv~~lk~~~~~~~~g~~~p~gVLL~GPpGTGKT~LAralA~e~~~p~i---~is-~------- 249 (638)
T CHL00176 181 TFRDIAGIEEAKEEFEEVVSFLKKPERFTAVGAKIPKGVLLVGPPGTGKTLLAKAIAGEAEVPFF---SIS-G------- 249 (638)
T ss_pred CHHhccChHHHHHHHHHHHHHHhCHHHHhhccCCCCceEEEECCCCCCHHHHHHHHHHHhCCCee---ecc-H-------
Confidence 34678898887777666542 1 1122456899999999999999999986532221 111 0
Q ss_pred CChHHHHHHHHHHHhcCccccCCCCChHHHHHHhcCCcEEEEEeCCCChH------------H----HHHHHhccCC--C
Q 002220 254 GGLVYLRDRVVSEIFQEDIKIGTPYLPDYIVERLNRMKVLTVLDDVNKVR------------Q----LHYLACVLDQ--F 315 (951)
Q Consensus 254 ~~~~~l~~~il~~l~~~~~~~~~~~~~~~l~~~l~~~~~LlVlDdv~~~~------------~----~~~l~~~~~~--~ 315 (951)
..+..... +. ......+.+.+.....+.+|++|+++... . +..+...+.. .
T Consensus 250 ---s~f~~~~~----g~----~~~~vr~lF~~A~~~~P~ILfIDEID~l~~~r~~~~~~~~~e~~~~L~~LL~~~dg~~~ 318 (638)
T CHL00176 250 ---SEFVEMFV----GV----GAARVRDLFKKAKENSPCIVFIDEIDAVGRQRGAGIGGGNDEREQTLNQLLTEMDGFKG 318 (638)
T ss_pred ---HHHHHHhh----hh----hHHHHHHHHHHHhcCCCcEEEEecchhhhhcccCCCCCCcHHHHHHHHHHHhhhccccC
Confidence 00100000 00 00000123334445678999999995331 1 2333333222 1
Q ss_pred CCCCEEEEEeCCchhhhh-----cCCCccceEEcCCCChhhhHHHHhhhhccCCCCChhHHHHHHHHHHHcCCC
Q 002220 316 GPGSRIIITTRDKRILDD-----FGVCDTDIYEVNKLRFHEALVLFSNFAFKENQCPGDLLALLERVLKYANGN 384 (951)
Q Consensus 316 ~~gs~IlvTtR~~~v~~~-----~~~~~~~~~~l~~L~~~~a~~Lf~~~~~~~~~~~~~~~~~~~~i~~~~~g~ 384 (951)
..+..||.||...+.... ...+ ..+.++..+.++-.+++..++-..... .......+++.+.|.
T Consensus 319 ~~~ViVIaaTN~~~~LD~ALlRpGRFd--~~I~v~lPd~~~R~~IL~~~l~~~~~~---~d~~l~~lA~~t~G~ 387 (638)
T CHL00176 319 NKGVIVIAATNRVDILDAALLRPGRFD--RQITVSLPDREGRLDILKVHARNKKLS---PDVSLELIARRTPGF 387 (638)
T ss_pred CCCeeEEEecCchHhhhhhhhccccCc--eEEEECCCCHHHHHHHHHHHHhhcccc---hhHHHHHHHhcCCCC
Confidence 345567777766443321 1233 678999999999999998877432211 122345667777763
No 173
>PRK10865 protein disaggregation chaperone; Provisional
Probab=97.55 E-value=0.00066 Score=82.93 Aligned_cols=66 Identities=18% Similarity=0.224 Sum_probs=48.2
Q ss_pred HHHHHHHHHHhhccccccCCCCCCcccchhhHHHHHHhhccCCCCcEEEEEEecCCChhHHHHHHHHHHhhc
Q 002220 164 LVDVIVKDILKKLENVTASTYSDGFVGLNSRIQKIKSLLCIGLPDFRTIGIWGMGGIGKTTLAGAVFKLISR 235 (951)
Q Consensus 164 ~i~~i~~~i~~~~~~~~~~~~~~~~vGr~~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~~~~~~~~ 235 (951)
.+++...+...+.+ +..-+.++||+.++.++...|.... ..-+.++|.+|+|||++|+.++.++..
T Consensus 160 ~l~~~~~~l~~~~r----~~~l~~vigr~~ei~~~i~iL~r~~--~~n~lL~G~pGvGKT~l~~~la~~i~~ 225 (857)
T PRK10865 160 ALKKYTIDLTERAE----QGKLDPVIGRDEEIRRTIQVLQRRT--KNNPVLIGEPGVGKTAIVEGLAQRIIN 225 (857)
T ss_pred HHHHHhhhHHHHHh----cCCCCcCCCCHHHHHHHHHHHhcCC--cCceEEECCCCCCHHHHHHHHHHHhhc
Confidence 45555555555442 2334569999999999999886432 335669999999999999999997644
No 174
>PRK08116 hypothetical protein; Validated
Probab=97.53 E-value=0.00052 Score=71.77 Aligned_cols=102 Identities=23% Similarity=0.284 Sum_probs=57.2
Q ss_pred EEEEEEecCCChhHHHHHHHHHHhhccccceeecccccchhcCCCChHHHHHHHHHHHhcCccccCCCCChHHHHHHhcC
Q 002220 210 RTIGIWGMGGIGKTTLAGAVFKLISREFEGKCFMPNVREESENGGGLVYLRDRVVSEIFQEDIKIGTPYLPDYIVERLNR 289 (951)
Q Consensus 210 ~vv~I~G~gGiGKTtLA~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~l~~~il~~l~~~~~~~~~~~~~~~l~~~l~~ 289 (951)
..+.++|.+|+|||.||.++++.+..+...++|+. ...+...+....... .......+.+.+.+
T Consensus 115 ~gl~l~G~~GtGKThLa~aia~~l~~~~~~v~~~~-----------~~~ll~~i~~~~~~~-----~~~~~~~~~~~l~~ 178 (268)
T PRK08116 115 VGLLLWGSVGTGKTYLAACIANELIEKGVPVIFVN-----------FPQLLNRIKSTYKSS-----GKEDENEIIRSLVN 178 (268)
T ss_pred ceEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEE-----------HHHHHHHHHHHHhcc-----ccccHHHHHHHhcC
Confidence 45889999999999999999998765544455553 122333333322111 11111344455554
Q ss_pred CcEEEEEeCCC--ChHHH--HHHHhccCC-CCCCCEEEEEeCCc
Q 002220 290 MKVLTVLDDVN--KVRQL--HYLACVLDQ-FGPGSRIIITTRDK 328 (951)
Q Consensus 290 ~~~LlVlDdv~--~~~~~--~~l~~~~~~-~~~gs~IlvTtR~~ 328 (951)
-. ||||||+. ....| +.+...+.. ...|..+||||...
T Consensus 179 ~d-lLviDDlg~e~~t~~~~~~l~~iin~r~~~~~~~IiTsN~~ 221 (268)
T PRK08116 179 AD-LLILDDLGAERDTEWAREKVYNIIDSRYRKGLPTIVTTNLS 221 (268)
T ss_pred CC-EEEEecccCCCCCHHHHHHHHHHHHHHHHCCCCEEEECCCC
Confidence 44 89999993 22222 223222221 13556788988644
No 175
>TIGR03346 chaperone_ClpB ATP-dependent chaperone ClpB. Members of this protein family are the bacterial ATP-dependent chaperone ClpB. This protein belongs to the AAA family, ATPases associated with various cellular activities (pfam00004). This molecular chaperone does not act as a protease, but rather serves to disaggregate misfolded and aggregated proteins.
Probab=97.51 E-value=0.00068 Score=83.21 Aligned_cols=66 Identities=17% Similarity=0.255 Sum_probs=47.5
Q ss_pred HHHHHHHHHHhhccccccCCCCCCcccchhhHHHHHHhhccCCCCcEEEEEEecCCChhHHHHHHHHHHhhc
Q 002220 164 LVDVIVKDILKKLENVTASTYSDGFVGLNSRIQKIKSLLCIGLPDFRTIGIWGMGGIGKTTLAGAVFKLISR 235 (951)
Q Consensus 164 ~i~~i~~~i~~~~~~~~~~~~~~~~vGr~~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~~~~~~~~ 235 (951)
.+++...++..+. .+..-+.+|||+.++.++...|.... ..-+.++|.+|+|||++|+.+++++..
T Consensus 155 ~l~~~~~~l~~~~----~~~~~~~~igr~~ei~~~~~~l~r~~--~~n~lL~G~pGvGKT~l~~~la~~i~~ 220 (852)
T TIGR03346 155 ALEKYARDLTERA----REGKLDPVIGRDEEIRRTIQVLSRRT--KNNPVLIGEPGVGKTAIVEGLAQRIVN 220 (852)
T ss_pred HHHHHhhhHHHHh----hCCCCCcCCCcHHHHHHHHHHHhcCC--CCceEEEcCCCCCHHHHHHHHHHHHhc
Confidence 4444444444444 22334569999999999999986433 344568999999999999999987654
No 176
>COG1222 RPT1 ATP-dependent 26S proteasome regulatory subunit [Posttranslational modification, protein turnover, chaperones]
Probab=97.51 E-value=0.0012 Score=68.45 Aligned_cols=171 Identities=23% Similarity=0.261 Sum_probs=97.5
Q ss_pred CCcccchhhHHHHHHhhcc-----------CCCCcEEEEEEecCCChhHHHHHHHHHHhhccccceeecccccchhcCCC
Q 002220 186 DGFVGLNSRIQKIKSLLCI-----------GLPDFRTIGIWGMGGIGKTTLAGAVFKLISREFEGKCFMPNVREESENGG 254 (951)
Q Consensus 186 ~~~vGr~~~~~~l~~~L~~-----------~~~~~~vv~I~G~gGiGKTtLA~~~~~~~~~~f~~~~~~~~~~~~~~~~~ 254 (951)
..+=|-++.+++|.+.... +-+.++=|.+||++|.|||-||++|+++....|-.++ + |
T Consensus 151 ~dIGGL~~Qi~EirE~VELPL~~PElF~~~GI~PPKGVLLYGPPGTGKTLLAkAVA~~T~AtFIrvv-----g--S---- 219 (406)
T COG1222 151 EDIGGLDEQIQEIREVVELPLKNPELFEELGIDPPKGVLLYGPPGTGKTLLAKAVANQTDATFIRVV-----G--S---- 219 (406)
T ss_pred hhccCHHHHHHHHHHHhcccccCHHHHHHcCCCCCCceEeeCCCCCcHHHHHHHHHhccCceEEEec-----c--H----
Confidence 3455677778887776542 1134677999999999999999999998766654222 1 0
Q ss_pred ChHHHHHHHHHHHhcCccccCCCCChHHHHHHh-cCCcEEEEEeCCCChH--------------H--HHHHHhccCCCC-
Q 002220 255 GLVYLRDRVVSEIFQEDIKIGTPYLPDYIVERL-NRMKVLTVLDDVNKVR--------------Q--LHYLACVLDQFG- 316 (951)
Q Consensus 255 ~~~~l~~~il~~l~~~~~~~~~~~~~~~l~~~l-~~~~~LlVlDdv~~~~--------------~--~~~l~~~~~~~~- 316 (951)
.+.+.. .+.. ......+.+.- ...+..|.+|.++... | +-.++..+..|.
T Consensus 220 ---ElVqKY----iGEG-----aRlVRelF~lArekaPsIIFiDEIDAIg~kR~d~~t~gDrEVQRTmleLL~qlDGFD~ 287 (406)
T COG1222 220 ---ELVQKY----IGEG-----ARLVRELFELAREKAPSIIFIDEIDAIGAKRFDSGTSGDREVQRTMLELLNQLDGFDP 287 (406)
T ss_pred ---HHHHHH----hccc-----hHHHHHHHHHHhhcCCeEEEEechhhhhcccccCCCCchHHHHHHHHHHHHhccCCCC
Confidence 011111 1100 00001111111 3467888889875321 1 333445555444
Q ss_pred -CCCEEEEEeCCchhhhh-----cCCCccceEEcCCCChhhhHHHHhhhhccCCC-CChhHHHHHHHHHHHcCCCc
Q 002220 317 -PGSRIIITTRDKRILDD-----FGVCDTDIYEVNKLRFHEALVLFSNFAFKENQ-CPGDLLALLERVLKYANGNP 385 (951)
Q Consensus 317 -~gs~IlvTtR~~~v~~~-----~~~~~~~~~~l~~L~~~~a~~Lf~~~~~~~~~-~~~~~~~~~~~i~~~~~g~P 385 (951)
...+||..|.-.+++.- -..+ +.++++.-+.+.-.++|.-|+-+-.. ..-++ +.+++.+.|.-
T Consensus 288 ~~nvKVI~ATNR~D~LDPALLRPGR~D--RkIEfplPd~~gR~~Il~IHtrkM~l~~dvd~----e~la~~~~g~s 357 (406)
T COG1222 288 RGNVKVIMATNRPDILDPALLRPGRFD--RKIEFPLPDEEGRAEILKIHTRKMNLADDVDL----ELLARLTEGFS 357 (406)
T ss_pred CCCeEEEEecCCccccChhhcCCCccc--ceeecCCCCHHHHHHHHHHHhhhccCccCcCH----HHHHHhcCCCc
Confidence 35688988876655432 2345 77899966677777788777644322 12233 44556666654
No 177
>PRK11034 clpA ATP-dependent Clp protease ATP-binding subunit; Provisional
Probab=97.50 E-value=0.00058 Score=81.37 Aligned_cols=65 Identities=17% Similarity=0.227 Sum_probs=46.0
Q ss_pred HHHHHHHHHHhhccccccCCCCCCcccchhhHHHHHHhhccCCCCcEEEEEEecCCChhHHHHHHHHHHhh
Q 002220 164 LVDVIVKDILKKLENVTASTYSDGFVGLNSRIQKIKSLLCIGLPDFRTIGIWGMGGIGKTTLAGAVFKLIS 234 (951)
Q Consensus 164 ~i~~i~~~i~~~~~~~~~~~~~~~~vGr~~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~~~~~~~ 234 (951)
.+++...++..+.+ ...-+.++||+.++.++.+.|.... ..-+.++|.+|+|||++|+.+++++.
T Consensus 168 ~l~~~~~~l~~~a~----~g~~~~liGR~~ei~~~i~iL~r~~--~~n~LLvGppGvGKT~lae~la~~i~ 232 (758)
T PRK11034 168 RMENFTTNLNQLAR----VGGIDPLIGREKELERAIQVLCRRR--KNNPLLVGESGVGKTAIAEGLAWRIV 232 (758)
T ss_pred HHHHHHHhHHHHHH----cCCCCcCcCCCHHHHHHHHHHhccC--CCCeEEECCCCCCHHHHHHHHHHHHH
Confidence 44555555444331 1223469999999999999886532 23456899999999999999998653
No 178
>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]
Probab=97.50 E-value=4.3e-06 Score=73.67 Aligned_cols=90 Identities=22% Similarity=0.311 Sum_probs=45.5
Q ss_pred cccCCCCcEEEcccCCCcccCcccc-CCCCCcEEeeccCCCCccCCcccCCcCCCCCCCCEEeccCCCCCCcCccCCCCC
Q 002220 789 LEKMELLETLDLERTGVKELPPSFE-NLQGLRQLSLIGCSELKCSGWVLPTRISKLSSLERLQLSGCEIKEIPEDIDCLS 867 (951)
Q Consensus 789 l~~l~~L~~L~l~~n~i~~l~~~~~-~l~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~l~~l~~~l~~l~ 867 (951)
+.....|+..+|++|.+..+|..|. .++.+++|++.+|.+.. +|..+..++.|+.|+++.|++...|..+..+.
T Consensus 49 l~~~~el~~i~ls~N~fk~fp~kft~kf~t~t~lNl~~neisd-----vPeE~Aam~aLr~lNl~~N~l~~~p~vi~~L~ 123 (177)
T KOG4579|consen 49 LSKGYELTKISLSDNGFKKFPKKFTIKFPTATTLNLANNEISD-----VPEELAAMPALRSLNLRFNPLNAEPRVIAPLI 123 (177)
T ss_pred HhCCceEEEEecccchhhhCCHHHhhccchhhhhhcchhhhhh-----chHHHhhhHHhhhcccccCccccchHHHHHHH
Confidence 3344445555666666665555442 23345555555554443 44444555555555555555555554444455
Q ss_pred CCCEEEccCCCCcccc
Q 002220 868 SLEVLDLSGSKIEILP 883 (951)
Q Consensus 868 ~L~~L~L~~n~l~~l~ 883 (951)
+|-.|+..+|.+..+|
T Consensus 124 ~l~~Lds~~na~~eid 139 (177)
T KOG4579|consen 124 KLDMLDSPENARAEID 139 (177)
T ss_pred hHHHhcCCCCccccCc
Confidence 5555555555554444
No 179
>PF08357 SEFIR: SEFIR domain; InterPro: IPR013568 This domain is found in IL17 receptors (IL17Rs, e.g. Q60943 from SWISSPROT) and SEF proteins (e.g. Q8QHJ9 from SWISSPROT). The latter are feedback inhibitors of FGF signalling and are also thought to be receptors. Due to its similarity to the TIR domain (IPR000157 from INTERPRO), the SEFIR region is thought to be involved in homotypic interactions with other SEFIR/TIR-domain-containing proteins. Thus, SEFs and IL17Rs may be involved in TOLL/IL1R-like signalling pathways [].
Probab=97.49 E-value=0.00013 Score=69.41 Aligned_cols=65 Identities=20% Similarity=0.307 Sum_probs=56.7
Q ss_pred cEEEcccccccc-cchHHHHHHHHHhC-CCeEEecCcccCC--CCCchHHHHHHhhccceEEEEecCCc
Q 002220 12 DVFLSFRGEDTR-DNFTSHLYAALCRK-KIKTFIDDEELRR--GDDISPALLNAIQGSKISVIIFSKDY 76 (951)
Q Consensus 12 dvfis~~~~d~~-~~~~~~l~~~L~~~-g~~~~~d~~~~~~--g~~~~~~~~~~i~~s~~~i~v~s~~~ 76 (951)
-|||||+..... ..+|..|++.|++. |+.|.+|.++... +..+..++.++++++.++|+|+||.|
T Consensus 2 kVfI~Ys~d~~~h~~~V~~la~~L~~~~g~~V~lD~~~~~~i~~~g~~~W~~~~~~~ad~Vliv~S~~~ 70 (150)
T PF08357_consen 2 KVFISYSHDSEEHKEWVLALAEFLRQNCGIDVILDQWELNEIARQGPPRWMERQIREADKVLIVCSPGY 70 (150)
T ss_pred eEEEEeCCCCHHHHHHHHHHHHHHHhccCCceeecHHhhcccccCCHHHHHHHHHhcCCEEEEEeccch
Confidence 389999885533 47899999999999 9999999988854 77899999999999999999999655
No 180
>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]
Probab=97.49 E-value=1.8e-05 Score=77.92 Aligned_cols=181 Identities=17% Similarity=0.172 Sum_probs=125.7
Q ss_pred cccCCCCcEEeccccccccccccc----ccCCCCCCEEeccCCCC----------CCccchhcccCCCCcEEEcccCCCc
Q 002220 741 IECLTNLETLDLRLCERLKRVSTS----ICKLKSLGSLLLAFCSN----------LEGFPEILEKMELLETLDLERTGVK 806 (951)
Q Consensus 741 l~~l~~L~~L~Ls~~~~~~~~~~~----~~~l~~L~~L~l~~~~~----------~~~~~~~l~~l~~L~~L~l~~n~i~ 806 (951)
+..+..+..++||+|.+.+..... +.+-.+|+..+++.-.. +..+...+-+||.|+..+|+.|.+.
T Consensus 26 l~~~d~~~evdLSGNtigtEA~e~l~~~ia~~~~L~vvnfsd~ftgr~kde~~~~L~~Ll~aLlkcp~l~~v~LSDNAfg 105 (388)
T COG5238 26 LEMMDELVEVDLSGNTIGTEAMEELCNVIANVRNLRVVNFSDAFTGRDKDELYSNLVMLLKALLKCPRLQKVDLSDNAFG 105 (388)
T ss_pred HHhhcceeEEeccCCcccHHHHHHHHHHHhhhcceeEeehhhhhhcccHHHHHHHHHHHHHHHhcCCcceeeeccccccC
Confidence 344677888888888776654433 44556777777765321 1123345678999999999999987
Q ss_pred -ccCc----cccCCCCCcEEeeccCCCCccCCcccCC---------cCCCCCCCCEEeccCCCCCCcCc-----cCCCCC
Q 002220 807 -ELPP----SFENLQGLRQLSLIGCSELKCSGWVLPT---------RISKLSSLERLQLSGCEIKEIPE-----DIDCLS 867 (951)
Q Consensus 807 -~l~~----~~~~l~~L~~L~l~~~~~~~~~~~~~~~---------~~~~l~~L~~L~L~~~~l~~l~~-----~l~~l~ 867 (951)
+.|. .+++-+.|++|.+++|......|..+.. -..+-|.|+......|++...|. .+..-.
T Consensus 106 ~~~~e~L~d~is~~t~l~HL~l~NnGlGp~aG~rigkal~~la~nKKaa~kp~Le~vicgrNRlengs~~~~a~~l~sh~ 185 (388)
T COG5238 106 SEFPEELGDLISSSTDLVHLKLNNNGLGPIAGGRIGKALFHLAYNKKAADKPKLEVVICGRNRLENGSKELSAALLESHE 185 (388)
T ss_pred cccchHHHHHHhcCCCceeEEeecCCCCccchhHHHHHHHHHHHHhhhccCCCceEEEeccchhccCcHHHHHHHHHhhc
Confidence 3343 4677889999999999887765432221 12345789999999999886553 233446
Q ss_pred CCCEEEccCCCCc-----ccc-hhhcCCCCCCEEeeCCCCCCC--------cCCCccccccEeeeccCc
Q 002220 868 SLEVLDLSGSKIE-----ILP-TSIGQLSRLRQLNLLDCNMLQ--------SIPELPRGLLRLNAQNCR 922 (951)
Q Consensus 868 ~L~~L~L~~n~l~-----~l~-~~l~~l~~L~~L~L~~~~~l~--------~lp~~~~~L~~L~i~~C~ 922 (951)
+|+++.+..|.|. .+. ..+..+.+|+.|+|.+|.... .+|.. +.|++|.+.+|-
T Consensus 186 ~lk~vki~qNgIrpegv~~L~~~gl~y~~~LevLDlqDNtft~~gS~~La~al~~W-~~lrEL~lnDCl 253 (388)
T COG5238 186 NLKEVKIQQNGIRPEGVTMLAFLGLFYSHSLEVLDLQDNTFTLEGSRYLADALCEW-NLLRELRLNDCL 253 (388)
T ss_pred CceeEEeeecCcCcchhHHHHHHHHHHhCcceeeeccccchhhhhHHHHHHHhccc-chhhhccccchh
Confidence 8999999999776 121 456778999999999986543 12333 348999999983
No 181
>PF05621 TniB: Bacterial TniB protein; InterPro: IPR008868 This family consists of several bacterial TniB NTP-binding proteins. TniB is a probable ATP-binding protein [] which is involved in Tn5053 mercury resistance transposition [].
Probab=97.49 E-value=0.0021 Score=66.51 Aligned_cols=193 Identities=14% Similarity=0.179 Sum_probs=111.9
Q ss_pred CCcccchh---hHHHHHHhhccC-CCCcEEEEEEecCCChhHHHHHHHHHHhhccccc------eeecccccchhcCCCC
Q 002220 186 DGFVGLNS---RIQKIKSLLCIG-LPDFRTIGIWGMGGIGKTTLAGAVFKLISREFEG------KCFMPNVREESENGGG 255 (951)
Q Consensus 186 ~~~vGr~~---~~~~l~~~L~~~-~~~~~vv~I~G~gGiGKTtLA~~~~~~~~~~f~~------~~~~~~~~~~~~~~~~ 255 (951)
+.+||-.. -++.|.+++... .....-+.|+|.+|+|||+++++++......++. ++.+. ....++
T Consensus 34 ~rWIgY~~A~~~L~~L~~Ll~~P~~~Rmp~lLivG~snnGKT~Ii~rF~~~hp~~~d~~~~~~PVv~vq-----~P~~p~ 108 (302)
T PF05621_consen 34 DRWIGYPRAKEALDRLEELLEYPKRHRMPNLLIVGDSNNGKTMIIERFRRLHPPQSDEDAERIPVVYVQ-----MPPEPD 108 (302)
T ss_pred CCeecCHHHHHHHHHHHHHHhCCcccCCCceEEecCCCCcHHHHHHHHHHHCCCCCCCCCccccEEEEe-----cCCCCC
Confidence 34555433 345566666533 2445679999999999999999999865444432 22222 233678
Q ss_pred hHHHHHHHHHHHhcCccccCCCCCh-HHHHHHhcC-CcEEEEEeCCCCh-----HHHHHHHhccCCCC---CCCEEEEEe
Q 002220 256 LVYLRDRVVSEIFQEDIKIGTPYLP-DYIVERLNR-MKVLTVLDDVNKV-----RQLHYLACVLDQFG---PGSRIIITT 325 (951)
Q Consensus 256 ~~~l~~~il~~l~~~~~~~~~~~~~-~~l~~~l~~-~~~LlVlDdv~~~-----~~~~~l~~~~~~~~---~gs~IlvTt 325 (951)
...+...|+.++............. ..+...++. +--+||+|.+.+. .+-..++..++..+ .-+-|.+-|
T Consensus 109 ~~~~Y~~IL~~lgaP~~~~~~~~~~~~~~~~llr~~~vrmLIIDE~H~lLaGs~~~qr~~Ln~LK~L~NeL~ipiV~vGt 188 (302)
T PF05621_consen 109 ERRFYSAILEALGAPYRPRDRVAKLEQQVLRLLRRLGVRMLIIDEFHNLLAGSYRKQREFLNALKFLGNELQIPIVGVGT 188 (302)
T ss_pred hHHHHHHHHHHhCcccCCCCCHHHHHHHHHHHHHHcCCcEEEeechHHHhcccHHHHHHHHHHHHHHhhccCCCeEEecc
Confidence 8899999999998776554443333 444455544 3448899999653 22222333322222 234455555
Q ss_pred CCc--------hhhhhcCCCccceEEcCCCChhhhH-HHHhhhhc----cCCCCChhHHHHHHHHHHHcCCCchHHH
Q 002220 326 RDK--------RILDDFGVCDTDIYEVNKLRFHEAL-VLFSNFAF----KENQCPGDLLALLERVLKYANGNPLALR 389 (951)
Q Consensus 326 R~~--------~v~~~~~~~~~~~~~l~~L~~~~a~-~Lf~~~~~----~~~~~~~~~~~~~~~i~~~~~g~PLal~ 389 (951)
++. +.+..+ .++.++....++-. +|+..... +... .-...++++.|...++|+.--+.
T Consensus 189 ~~A~~al~~D~QLa~RF-----~~~~Lp~W~~d~ef~~LL~s~e~~LPLr~~S-~l~~~~la~~i~~~s~G~iG~l~ 259 (302)
T PF05621_consen 189 REAYRALRTDPQLASRF-----EPFELPRWELDEEFRRLLASFERALPLRKPS-NLASPELARRIHERSEGLIGELS 259 (302)
T ss_pred HHHHHHhccCHHHHhcc-----CCccCCCCCCCcHHHHHHHHHHHhCCCCCCC-CCCCHHHHHHHHHHcCCchHHHH
Confidence 543 333332 56777777665543 44433221 1111 12345788999999999875544
No 182
>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]
Probab=97.48 E-value=6.4e-06 Score=72.61 Aligned_cols=104 Identities=23% Similarity=0.346 Sum_probs=76.1
Q ss_pred CCcEEEcccCCCcccCcc---ccCCCCCcEEeeccCCCCccCCcccCCcCC-CCCCCCEEeccCCCCCCcCccCCCCCCC
Q 002220 794 LLETLDLERTGVKELPPS---FENLQGLRQLSLIGCSELKCSGWVLPTRIS-KLSSLERLQLSGCEIKEIPEDIDCLSSL 869 (951)
Q Consensus 794 ~L~~L~l~~n~i~~l~~~---~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~-~l~~L~~L~L~~~~l~~l~~~l~~l~~L 869 (951)
.+..++|+.+.+..++.. +.....|+..+|++|.... +|..|. .++.++.|+|++|.++++|..+..++.|
T Consensus 28 E~h~ldLssc~lm~i~davy~l~~~~el~~i~ls~N~fk~-----fp~kft~kf~t~t~lNl~~neisdvPeE~Aam~aL 102 (177)
T KOG4579|consen 28 ELHFLDLSSCQLMYIADAVYMLSKGYELTKISLSDNGFKK-----FPKKFTIKFPTATTLNLANNEISDVPEELAAMPAL 102 (177)
T ss_pred HhhhcccccchhhHHHHHHHHHhCCceEEEEecccchhhh-----CCHHHhhccchhhhhhcchhhhhhchHHHhhhHHh
Confidence 356677777777766554 3445567777888887765 444443 4457888888888888888888888888
Q ss_pred CEEEccCCCCcccchhhcCCCCCCEEeeCCCCC
Q 002220 870 EVLDLSGSKIEILPTSIGQLSRLRQLNLLDCNM 902 (951)
Q Consensus 870 ~~L~L~~n~l~~l~~~l~~l~~L~~L~L~~~~~ 902 (951)
+.|+++.|.+...|..+..+.+|-.|+..+|..
T Consensus 103 r~lNl~~N~l~~~p~vi~~L~~l~~Lds~~na~ 135 (177)
T KOG4579|consen 103 RSLNLRFNPLNAEPRVIAPLIKLDMLDSPENAR 135 (177)
T ss_pred hhcccccCccccchHHHHHHHhHHHhcCCCCcc
Confidence 888888888888887777777888887776543
No 183
>PRK07399 DNA polymerase III subunit delta'; Validated
Probab=97.47 E-value=0.0038 Score=66.81 Aligned_cols=193 Identities=12% Similarity=0.083 Sum_probs=106.7
Q ss_pred CCcccchhhHHHHHHhhccCCCCcEEEEEEecCCChhHHHHHHHHHHhhc---------------cccceeecccccchh
Q 002220 186 DGFVGLNSRIQKIKSLLCIGLPDFRTIGIWGMGGIGKTTLAGAVFKLISR---------------EFEGKCFMPNVREES 250 (951)
Q Consensus 186 ~~~vGr~~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~~~~~~~~---------------~f~~~~~~~~~~~~~ 250 (951)
.+++|.+...+.+...+..+ .-.+...++|+.|+||+++|..+++.+-. .++...|+.-.....
T Consensus 4 ~~iiGq~~~~~~L~~~i~~~-rl~ha~Lf~G~~G~Gk~~~A~~~a~~llc~~~c~~c~~~~~~~~~hPDl~~i~p~~~~~ 82 (314)
T PRK07399 4 ANLIGQPLAIELLTAAIKQN-RIAPAYLFAGPEGVGRKLAALCFIEGLLSQGSPSKNIRRRLEEGNHPDLLWVEPTYQHQ 82 (314)
T ss_pred HHhCCHHHHHHHHHHHHHhC-CCCceEEEECCCCCCHHHHHHHHHHHHcCCCCCCCcHhcccccCCCCCEEEEecccccc
Confidence 46899999999999988543 22478999999999999999999885421 223334432110000
Q ss_pred cCCCChHHHHHHHHHHHh--cCccccCCCCChHHHHHHh-----cCCcEEEEEeCCCCh--HHHHHHHhccCCCCCCCEE
Q 002220 251 ENGGGLVYLRDRVVSEIF--QEDIKIGTPYLPDYIVERL-----NRMKVLTVLDDVNKV--RQLHYLACVLDQFGPGSRI 321 (951)
Q Consensus 251 ~~~~~~~~l~~~il~~l~--~~~~~~~~~~~~~~l~~~l-----~~~~~LlVlDdv~~~--~~~~~l~~~~~~~~~gs~I 321 (951)
. ... ....+...+ .........+....+.+.+ .+++-++|+|+++.. .....++..+...+ .+.+
T Consensus 83 g--~~~---~~~~~~~~~~~~~~~~~I~id~ir~i~~~l~~~p~~~~~kVvII~~ae~m~~~aaNaLLK~LEEPp-~~~f 156 (314)
T PRK07399 83 G--KLI---TASEAEEAGLKRKAPPQIRLEQIREIKRFLSRPPLEAPRKVVVIEDAETMNEAAANALLKTLEEPG-NGTL 156 (314)
T ss_pred c--ccc---chhhhhhccccccccccCcHHHHHHHHHHHccCcccCCceEEEEEchhhcCHHHHHHHHHHHhCCC-CCeE
Confidence 0 000 000000000 0000000000112233333 245678899998644 34556665554434 4445
Q ss_pred EEEe-CCchhhhhcCCCccceEEcCCCChhhhHHHHhhhhccCCCCChhHHHHHHHHHHHcCCCchHHHHH
Q 002220 322 IITT-RDKRILDDFGVCDTDIYEVNKLRFHEALVLFSNFAFKENQCPGDLLALLERVLKYANGNPLALRVL 391 (951)
Q Consensus 322 lvTt-R~~~v~~~~~~~~~~~~~l~~L~~~~a~~Lf~~~~~~~~~~~~~~~~~~~~i~~~~~g~PLal~~~ 391 (951)
|++| ....+...... ....+.+.+++.++..+.+.+....... . .....++..++|.|..+..+
T Consensus 157 ILi~~~~~~Ll~TI~S-Rcq~i~f~~l~~~~~~~~L~~~~~~~~~---~--~~~~~l~~~a~Gs~~~al~~ 221 (314)
T PRK07399 157 ILIAPSPESLLPTIVS-RCQIIPFYRLSDEQLEQVLKRLGDEEIL---N--INFPELLALAQGSPGAAIAN 221 (314)
T ss_pred EEEECChHhCcHHHHh-hceEEecCCCCHHHHHHHHHHhhccccc---h--hHHHHHHHHcCCCHHHHHHH
Confidence 5544 44444332211 1278999999999999999886521111 1 11357888999999765443
No 184
>COG0542 clpA ATP-binding subunits of Clp protease and DnaK/DnaJ chaperones [Posttranslational modification, protein turnover, chaperones]
Probab=97.47 E-value=0.00066 Score=79.09 Aligned_cols=119 Identities=18% Similarity=0.230 Sum_probs=80.5
Q ss_pred CCcccchhhHHHHHHhhcc-------CCCCcEEEEEEecCCChhHHHHHHHHHHhhccccceeecccccchhcCCCChHH
Q 002220 186 DGFVGLNSRIQKIKSLLCI-------GLPDFRTIGIWGMGGIGKTTLAGAVFKLISREFEGKCFMPNVREESENGGGLVY 258 (951)
Q Consensus 186 ~~~vGr~~~~~~l~~~L~~-------~~~~~~vv~I~G~gGiGKTtLA~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~ 258 (951)
..++|-+..++.+.+.+.. ......+....|+.|||||.||++++..+-..=+..+-+ +.. ..
T Consensus 491 ~rViGQd~AV~avs~aIrraRaGL~dp~rPigsFlF~GPTGVGKTELAkaLA~~Lfg~e~aliR~-DMS---------Ey 560 (786)
T COG0542 491 KRVIGQDEAVEAVSDAIRRARAGLGDPNRPIGSFLFLGPTGVGKTELAKALAEALFGDEQALIRI-DMS---------EY 560 (786)
T ss_pred cceeChHHHHHHHHHHHHHHhcCCCCCCCCceEEEeeCCCcccHHHHHHHHHHHhcCCCccceee-chH---------HH
Confidence 4789999999998887752 223457888899999999999999998553211222222 111 13
Q ss_pred HHHHHHHHHhcCccccCCCCChHHHHHHhcCCcE-EEEEeCCCCh--HHHHHHHhccCC
Q 002220 259 LRDRVVSEIFQEDIKIGTPYLPDYIVERLNRMKV-LTVLDDVNKV--RQLHYLACVLDQ 314 (951)
Q Consensus 259 l~~~il~~l~~~~~~~~~~~~~~~l~~~l~~~~~-LlVlDdv~~~--~~~~~l~~~~~~ 314 (951)
.-+.-.+.+.+..++...-+++..+-+..++++| ++.||.|+.. +-++-++..+..
T Consensus 561 ~EkHsVSrLIGaPPGYVGyeeGG~LTEaVRr~PySViLlDEIEKAHpdV~nilLQVlDd 619 (786)
T COG0542 561 MEKHSVSRLIGAPPGYVGYEEGGQLTEAVRRKPYSVILLDEIEKAHPDVFNLLLQVLDD 619 (786)
T ss_pred HHHHHHHHHhCCCCCCceeccccchhHhhhcCCCeEEEechhhhcCHHHHHHHHHHhcC
Confidence 3455667777776665554556788888888988 7778999744 446666666544
No 185
>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]
Probab=97.47 E-value=0.0002 Score=68.04 Aligned_cols=86 Identities=24% Similarity=0.301 Sum_probs=42.1
Q ss_pred cccCCCCcEEEcccCCCcccCcccc-CCCCCcEEeeccCCCCccCCcccCCcCCCCCCCCEEeccCCCCCCcCc----cC
Q 002220 789 LEKMELLETLDLERTGVKELPPSFE-NLQGLRQLSLIGCSELKCSGWVLPTRISKLSSLERLQLSGCEIKEIPE----DI 863 (951)
Q Consensus 789 l~~l~~L~~L~l~~n~i~~l~~~~~-~l~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~l~~l~~----~l 863 (951)
|..++.|.+|.+.+|.|+.+...+. .+++|+.|.+.+|.+..+.. -.-+..+|.|++|.+-+|+++.-.. .+
T Consensus 60 lp~l~rL~tLll~nNrIt~I~p~L~~~~p~l~~L~LtnNsi~~l~d---l~pLa~~p~L~~Ltll~Npv~~k~~YR~yvl 136 (233)
T KOG1644|consen 60 LPHLPRLHTLLLNNNRITRIDPDLDTFLPNLKTLILTNNSIQELGD---LDPLASCPKLEYLTLLGNPVEHKKNYRLYVL 136 (233)
T ss_pred CCCccccceEEecCCcceeeccchhhhccccceEEecCcchhhhhh---cchhccCCccceeeecCCchhcccCceeEEE
Confidence 3344455555555555555433332 23455555555555444321 1124455566666666665554221 23
Q ss_pred CCCCCCCEEEccCC
Q 002220 864 DCLSSLEVLDLSGS 877 (951)
Q Consensus 864 ~~l~~L~~L~L~~n 877 (951)
..+|+|+.||..+-
T Consensus 137 ~klp~l~~LDF~kV 150 (233)
T KOG1644|consen 137 YKLPSLRTLDFQKV 150 (233)
T ss_pred EecCcceEeehhhh
Confidence 44566666666543
No 186
>KOG2227 consensus Pre-initiation complex, subunit CDC6, AAA+ superfamily ATPase [Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning]
Probab=97.45 E-value=0.0013 Score=70.55 Aligned_cols=174 Identities=15% Similarity=0.205 Sum_probs=105.5
Q ss_pred CCCCCcccchhhHHHHHHhhcc--CCCCcEEEEEEecCCChhHHHHHHHHHHhhccccc--eeecccccchhcCCCChHH
Q 002220 183 TYSDGFVGLNSRIQKIKSLLCI--GLPDFRTIGIWGMGGIGKTTLAGAVFKLISREFEG--KCFMPNVREESENGGGLVY 258 (951)
Q Consensus 183 ~~~~~~vGr~~~~~~l~~~L~~--~~~~~~vv~I~G~gGiGKTtLA~~~~~~~~~~f~~--~~~~~~~~~~~~~~~~~~~ 258 (951)
..+..++||+.++..+.+++.. +....+.+-|.|.+|.|||.+...++.+....... ++++.+.. -.....
T Consensus 147 ~~p~~l~gRe~e~~~v~~F~~~hle~~t~gSlYVsG~PGtgkt~~l~rvl~~~~~~~~~~~~v~inc~s-----l~~~~a 221 (529)
T KOG2227|consen 147 APPGTLKGRELEMDIVREFFSLHLELNTSGSLYVSGQPGTGKTALLSRVLDSLSKSSKSPVTVYINCTS-----LTEASA 221 (529)
T ss_pred CCCCCccchHHHHHHHHHHHHhhhhcccCcceEeeCCCCcchHHHHHHHHHhhhhhcccceeEEEeecc-----ccchHH
Confidence 3467899999999999999862 33556789999999999999999999876555443 35554331 123445
Q ss_pred HHHHHHHHHhcCccccCCC-CChHHHHHHhcCC--cEEEEEeCCCChHH--HHHHHhccCCC-CCCCEEEEEeCCc----
Q 002220 259 LRDRVVSEIFQEDIKIGTP-YLPDYIVERLNRM--KVLTVLDDVNKVRQ--LHYLACVLDQF-GPGSRIIITTRDK---- 328 (951)
Q Consensus 259 l~~~il~~l~~~~~~~~~~-~~~~~l~~~l~~~--~~LlVlDdv~~~~~--~~~l~~~~~~~-~~gs~IlvTtR~~---- 328 (951)
+...|...+.......... +..+.+.+...+. .+|+|+|.++.... -+.+...+.|. -+++|+|+.---.
T Consensus 222 iF~kI~~~~~q~~~s~~~~~~~~~~~~~h~~q~k~~~llVlDEmD~L~tr~~~vLy~lFewp~lp~sr~iLiGiANslDl 301 (529)
T KOG2227|consen 222 IFKKIFSSLLQDLVSPGTGMQHLEKFEKHTKQSKFMLLLVLDEMDHLITRSQTVLYTLFEWPKLPNSRIILIGIANSLDL 301 (529)
T ss_pred HHHHHHHHHHHHhcCCchhHHHHHHHHHHHhcccceEEEEechhhHHhhcccceeeeehhcccCCcceeeeeeehhhhhH
Confidence 6666666663322222222 1225555555443 58999999864432 11122222221 3566665432211
Q ss_pred --hhhhhcC---CCccceEEcCCCChhhhHHHHhhhhc
Q 002220 329 --RILDDFG---VCDTDIYEVNKLRFHEALVLFSNFAF 361 (951)
Q Consensus 329 --~v~~~~~---~~~~~~~~l~~L~~~~a~~Lf~~~~~ 361 (951)
..+.... ...+..+..++.+.++..++|..+.-
T Consensus 302 TdR~LprL~~~~~~~P~~l~F~PYTk~qI~~Il~~rl~ 339 (529)
T KOG2227|consen 302 TDRFLPRLNLDLTIKPKLLVFPPYTKDQIVEILQQRLS 339 (529)
T ss_pred HHHHhhhhhhccCCCCceeeecCCCHHHHHHHHHHHHh
Confidence 1111111 11236788999999999999998763
No 187
>TIGR00602 rad24 checkpoint protein rad24. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=97.42 E-value=0.00063 Score=78.89 Aligned_cols=53 Identities=19% Similarity=0.214 Sum_probs=43.0
Q ss_pred CCCCCCcccchhhHHHHHHhhccCC---CCcEEEEEEecCCChhHHHHHHHHHHhh
Q 002220 182 STYSDGFVGLNSRIQKIKSLLCIGL---PDFRTIGIWGMGGIGKTTLAGAVFKLIS 234 (951)
Q Consensus 182 ~~~~~~~vGr~~~~~~l~~~L~~~~---~~~~vv~I~G~gGiGKTtLA~~~~~~~~ 234 (951)
|...++++|-++.++++..++.... ...+++.|+|++|+||||+++.++..+.
T Consensus 80 P~~ldel~~~~~ki~~l~~~l~~~~~~~~~~~illL~GP~GsGKTTl~~~la~~l~ 135 (637)
T TIGR00602 80 PETQHELAVHKKKIEEVETWLKAQVLENAPKRILLITGPSGCGKSTTIKILSKELG 135 (637)
T ss_pred CCCHHHhcCcHHHHHHHHHHHHhcccccCCCcEEEEECCCCCCHHHHHHHHHHHhh
Confidence 4556789999999999999986332 3346899999999999999999997553
No 188
>TIGR01241 FtsH_fam ATP-dependent metalloprotease FtsH. HflB(FtsH) is a pleiotropic protein required for correct cell division in bacteria. It has ATP-dependent zinc metalloprotease activity. It was formerly designated cell division protein FtsH.
Probab=97.40 E-value=0.0012 Score=76.20 Aligned_cols=174 Identities=18% Similarity=0.161 Sum_probs=93.1
Q ss_pred CCCCcccchhhHHHHHHhhc---c-------CCCCcEEEEEEecCCChhHHHHHHHHHHhhccccceeecccccchhcCC
Q 002220 184 YSDGFVGLNSRIQKIKSLLC---I-------GLPDFRTIGIWGMGGIGKTTLAGAVFKLISREFEGKCFMPNVREESENG 253 (951)
Q Consensus 184 ~~~~~vGr~~~~~~l~~~L~---~-------~~~~~~vv~I~G~gGiGKTtLA~~~~~~~~~~f~~~~~~~~~~~~~~~~ 253 (951)
.-++++|.+...+++.+.+. . +....+-+.++|++|+|||++|++++......|- .+.
T Consensus 53 ~~~di~g~~~~k~~l~~~~~~l~~~~~~~~~g~~~~~giLL~GppGtGKT~la~alA~~~~~~~~---~i~--------- 120 (495)
T TIGR01241 53 TFKDVAGIDEAKEELMEIVDFLKNPSKFTKLGAKIPKGVLLVGPPGTGKTLLAKAVAGEAGVPFF---SIS--------- 120 (495)
T ss_pred CHHHhCCHHHHHHHHHHHHHHHHCHHHHHhcCCCCCCcEEEECCCCCCHHHHHHHHHHHcCCCee---ecc---------
Confidence 34568898887776665443 1 1223456889999999999999999986533221 111
Q ss_pred CChHHHHHHHHHHHhcCccccCCCCCh-HHHHHHhcCCcEEEEEeCCCChH----------------HHHHHHhccCCC-
Q 002220 254 GGLVYLRDRVVSEIFQEDIKIGTPYLP-DYIVERLNRMKVLTVLDDVNKVR----------------QLHYLACVLDQF- 315 (951)
Q Consensus 254 ~~~~~l~~~il~~l~~~~~~~~~~~~~-~~l~~~l~~~~~LlVlDdv~~~~----------------~~~~l~~~~~~~- 315 (951)
...+.... .+. ..... ..+.......+.+|++|+++... .+..+...+...
T Consensus 121 --~~~~~~~~----~g~-----~~~~l~~~f~~a~~~~p~Il~iDEid~l~~~r~~~~~~~~~~~~~~~~~lL~~~d~~~ 189 (495)
T TIGR01241 121 --GSDFVEMF----VGV-----GASRVRDLFEQAKKNAPCIIFIDEIDAVGRQRGAGLGGGNDEREQTLNQLLVEMDGFG 189 (495)
T ss_pred --HHHHHHHH----hcc-----cHHHHHHHHHHHHhcCCCEEEEechhhhhhccccCcCCccHHHHHHHHHHHhhhcccc
Confidence 00011000 000 00000 22223334567899999985421 122233222211
Q ss_pred -CCCCEEEEEeCCchhhh-----hcCCCccceEEcCCCChhhhHHHHhhhhccCCCCChhHHHHHHHHHHHcCCCc
Q 002220 316 -GPGSRIIITTRDKRILD-----DFGVCDTDIYEVNKLRFHEALVLFSNFAFKENQCPGDLLALLERVLKYANGNP 385 (951)
Q Consensus 316 -~~gs~IlvTtR~~~v~~-----~~~~~~~~~~~l~~L~~~~a~~Lf~~~~~~~~~~~~~~~~~~~~i~~~~~g~P 385 (951)
..+..||.||....... ....+ ..+.++..+.++-.++|..+.-...... + .....+++.+.|..
T Consensus 190 ~~~~v~vI~aTn~~~~ld~al~r~gRfd--~~i~i~~Pd~~~R~~il~~~l~~~~~~~-~--~~l~~la~~t~G~s 260 (495)
T TIGR01241 190 TNTGVIVIAATNRPDVLDPALLRPGRFD--RQVVVDLPDIKGREEILKVHAKNKKLAP-D--VDLKAVARRTPGFS 260 (495)
T ss_pred CCCCeEEEEecCChhhcCHHHhcCCcce--EEEEcCCCCHHHHHHHHHHHHhcCCCCc-c--hhHHHHHHhCCCCC
Confidence 23455666665543221 11234 6789999999999999987764322211 1 12346777777743
No 189
>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]
Probab=97.35 E-value=3.4e-05 Score=90.76 Aligned_cols=126 Identities=21% Similarity=0.184 Sum_probs=74.2
Q ss_pred CCCCceeeCcCCC----CCCCCCccccceeeccccCCCCCccCcccccCCCCcEEecccccccc-cccccccCCCCCCEE
Q 002220 700 FRSPIEIDCAWCV----NLTEFPQISGKVVKLRLWYTPIEEVPSSIECLTNLETLDLRLCERLK-RVSTSICKLKSLGSL 774 (951)
Q Consensus 700 l~~L~~L~l~~~~----~l~~l~~~~~~L~~L~l~~~~l~~lp~~l~~l~~L~~L~Ls~~~~~~-~~~~~~~~l~~L~~L 774 (951)
+|+|+.|.+++-. ....+-..+++|..|++++++++.+ ..++.+++|+.|.+.+-.+.. ..-..+.+|++|+.|
T Consensus 147 LPsL~sL~i~~~~~~~~dF~~lc~sFpNL~sLDIS~TnI~nl-~GIS~LknLq~L~mrnLe~e~~~~l~~LF~L~~L~vL 225 (699)
T KOG3665|consen 147 LPSLRSLVISGRQFDNDDFSQLCASFPNLRSLDISGTNISNL-SGISRLKNLQVLSMRNLEFESYQDLIDLFNLKKLRVL 225 (699)
T ss_pred CcccceEEecCceecchhHHHHhhccCccceeecCCCCccCc-HHHhccccHHHHhccCCCCCchhhHHHHhcccCCCee
Confidence 4455555544421 1223334566777777777888777 667888888888877654433 122336678888888
Q ss_pred eccCCCCCCcc------chhcccCCCCcEEEcccCCCcc--cCccccCCCCCcEEeeccC
Q 002220 775 LLAFCSNLEGF------PEILEKMELLETLDLERTGVKE--LPPSFENLQGLRQLSLIGC 826 (951)
Q Consensus 775 ~l~~~~~~~~~------~~~l~~l~~L~~L~l~~n~i~~--l~~~~~~l~~L~~L~l~~~ 826 (951)
++|........ -+.-..+|+|+.|+.+++.+.. +...+...++|+.+..-+|
T Consensus 226 DIS~~~~~~~~~ii~qYlec~~~LpeLrfLDcSgTdi~~~~le~ll~sH~~L~~i~~~~~ 285 (699)
T KOG3665|consen 226 DISRDKNNDDTKIIEQYLECGMVLPELRFLDCSGTDINEEILEELLNSHPNLQQIAALDC 285 (699)
T ss_pred eccccccccchHHHHHHHHhcccCccccEEecCCcchhHHHHHHHHHhCccHhhhhhhhh
Confidence 88876544331 1223457788888888777762 1222344555655554443
No 190
>PRK08769 DNA polymerase III subunit delta'; Validated
Probab=97.35 E-value=0.011 Score=62.98 Aligned_cols=95 Identities=16% Similarity=0.166 Sum_probs=62.6
Q ss_pred CCcEEEEEeCCCCh--HHHHHHHhccCCCCCCCEEEEEeCCc-hhhhhcCCCccceEEcCCCChhhhHHHHhhhhccCCC
Q 002220 289 RMKVLTVLDDVNKV--RQLHYLACVLDQFGPGSRIIITTRDK-RILDDFGVCDTDIYEVNKLRFHEALVLFSNFAFKENQ 365 (951)
Q Consensus 289 ~~~~LlVlDdv~~~--~~~~~l~~~~~~~~~gs~IlvTtR~~-~v~~~~~~~~~~~~~l~~L~~~~a~~Lf~~~~~~~~~ 365 (951)
+++-++|+|+++.. ..-..++..+....+++.+|++|.+. .+...... ....+.+.+++.+++.+.+.... .
T Consensus 112 g~~kV~iI~~ae~m~~~AaNaLLKtLEEPp~~~~fiL~~~~~~~lLpTIrS-RCq~i~~~~~~~~~~~~~L~~~~----~ 186 (319)
T PRK08769 112 GIAQVVIVDPADAINRAACNALLKTLEEPSPGRYLWLISAQPARLPATIRS-RCQRLEFKLPPAHEALAWLLAQG----V 186 (319)
T ss_pred CCcEEEEeccHhhhCHHHHHHHHHHhhCCCCCCeEEEEECChhhCchHHHh-hheEeeCCCcCHHHHHHHHHHcC----C
Confidence 45668899999744 34566666665556677777777654 34332211 12789999999999999887542 1
Q ss_pred CChhHHHHHHHHHHHcCCCchHHHHHh
Q 002220 366 CPGDLLALLERVLKYANGNPLALRVLG 392 (951)
Q Consensus 366 ~~~~~~~~~~~i~~~~~g~PLal~~~~ 392 (951)
. ...+..++..++|.|+....+.
T Consensus 187 -~---~~~a~~~~~l~~G~p~~A~~~~ 209 (319)
T PRK08769 187 -S---ERAAQEALDAARGHPGLAAQWL 209 (319)
T ss_pred -C---hHHHHHHHHHcCCCHHHHHHHh
Confidence 1 1235678999999998765544
No 191
>PRK08181 transposase; Validated
Probab=97.33 E-value=0.00088 Score=69.58 Aligned_cols=34 Identities=24% Similarity=0.191 Sum_probs=26.9
Q ss_pred EEEEEEecCCChhHHHHHHHHHHhhccccceeec
Q 002220 210 RTIGIWGMGGIGKTTLAGAVFKLISREFEGKCFM 243 (951)
Q Consensus 210 ~vv~I~G~gGiGKTtLA~~~~~~~~~~f~~~~~~ 243 (951)
.-+.++|++|+|||.||.++++....+...+.|+
T Consensus 107 ~nlll~Gp~GtGKTHLa~Aia~~a~~~g~~v~f~ 140 (269)
T PRK08181 107 ANLLLFGPPGGGKSHLAAAIGLALIENGWRVLFT 140 (269)
T ss_pred ceEEEEecCCCcHHHHHHHHHHHHHHcCCceeee
Confidence 4589999999999999999998765544445555
No 192
>TIGR02639 ClpA ATP-dependent Clp protease ATP-binding subunit clpA.
Probab=97.33 E-value=0.0022 Score=77.53 Aligned_cols=115 Identities=17% Similarity=0.153 Sum_probs=64.8
Q ss_pred CCCcccchhhHHHHHHhhccC------C-CCcEEEEEEecCCChhHHHHHHHHHHhhccccceeecccccchhcCCCChH
Q 002220 185 SDGFVGLNSRIQKIKSLLCIG------L-PDFRTIGIWGMGGIGKTTLAGAVFKLISREFEGKCFMPNVREESENGGGLV 257 (951)
Q Consensus 185 ~~~~vGr~~~~~~l~~~L~~~------~-~~~~vv~I~G~gGiGKTtLA~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~ 257 (951)
...++|.+..++.+...+... . ....++.++|++|+|||+||+.++..+... .+.+. ..+... ..
T Consensus 453 ~~~v~GQ~~ai~~l~~~i~~~~~g~~~~~~p~~~~lf~Gp~GvGKT~lA~~la~~l~~~---~~~~d-~se~~~-~~--- 524 (731)
T TIGR02639 453 KAKIFGQDEAIDSLVSSIKRSRAGLGNPNKPVGSFLFTGPTGVGKTELAKQLAEALGVH---LERFD-MSEYME-KH--- 524 (731)
T ss_pred hcceeCcHHHHHHHHHHHHHHhcCCCCCCCCceeEEEECCCCccHHHHHHHHHHHhcCC---eEEEe-Cchhhh-cc---
Confidence 356889999999888877521 1 124568899999999999999999866322 22221 111111 11
Q ss_pred HHHHHHHHHHhcCccccCCCCChHHHHHHhcCCc-EEEEEeCCCCh--HHHHHHHhcc
Q 002220 258 YLRDRVVSEIFQEDIKIGTPYLPDYIVERLNRMK-VLTVLDDVNKV--RQLHYLACVL 312 (951)
Q Consensus 258 ~l~~~il~~l~~~~~~~~~~~~~~~l~~~l~~~~-~LlVlDdv~~~--~~~~~l~~~~ 312 (951)
....+.+........+....+.+.++.++ -+++||+++.. +....+...+
T Consensus 525 -----~~~~lig~~~gyvg~~~~~~l~~~~~~~p~~VvllDEieka~~~~~~~Ll~~l 577 (731)
T TIGR02639 525 -----TVSRLIGAPPGYVGFEQGGLLTEAVRKHPHCVLLLDEIEKAHPDIYNILLQVM 577 (731)
T ss_pred -----cHHHHhcCCCCCcccchhhHHHHHHHhCCCeEEEEechhhcCHHHHHHHHHhh
Confidence 12222222222111122244555555444 49999999744 3345555444
No 193
>TIGR02640 gas_vesic_GvpN gas vesicle protein GvpN. Members of this family are the GvpN protein associated with the production of gas vesicles produced in some prokaryotes to give cells buoyancy. This family belongs to a larger family of ATPases (pfam07728).
Probab=97.32 E-value=0.0027 Score=66.49 Aligned_cols=27 Identities=37% Similarity=0.406 Sum_probs=22.2
Q ss_pred EEEEEEecCCChhHHHHHHHHHHhhcc
Q 002220 210 RTIGIWGMGGIGKTTLAGAVFKLISRE 236 (951)
Q Consensus 210 ~vv~I~G~gGiGKTtLA~~~~~~~~~~ 236 (951)
+-|.|.|.+|+|||++|+.+++.....
T Consensus 22 ~~vLL~G~~GtGKT~lA~~la~~lg~~ 48 (262)
T TIGR02640 22 YPVHLRGPAGTGKTTLAMHVARKRDRP 48 (262)
T ss_pred CeEEEEcCCCCCHHHHHHHHHHHhCCC
Confidence 356799999999999999999865433
No 194
>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]
Probab=97.28 E-value=0.00042 Score=65.84 Aligned_cols=103 Identities=23% Similarity=0.341 Sum_probs=73.3
Q ss_pred CCCCcEEEcccCCCcccCccccCCCCCcEEeeccCCCCccCCcccCCcCCCCCCCCEEeccCCCCCCcC--ccCCCCCCC
Q 002220 792 MELLETLDLERTGVKELPPSFENLQGLRQLSLIGCSELKCSGWVLPTRISKLSSLERLQLSGCEIKEIP--EDIDCLSSL 869 (951)
Q Consensus 792 l~~L~~L~l~~n~i~~l~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~l~~l~--~~l~~l~~L 869 (951)
+.+...+++++|.+..++ .|..++.|.+|.+.+|.++.. .|..-.-+++|..|.|.+|++.++. ..+..+|+|
T Consensus 41 ~d~~d~iDLtdNdl~~l~-~lp~l~rL~tLll~nNrIt~I----~p~L~~~~p~l~~L~LtnNsi~~l~dl~pLa~~p~L 115 (233)
T KOG1644|consen 41 LDQFDAIDLTDNDLRKLD-NLPHLPRLHTLLLNNNRITRI----DPDLDTFLPNLKTLILTNNSIQELGDLDPLASCPKL 115 (233)
T ss_pred ccccceecccccchhhcc-cCCCccccceEEecCCcceee----ccchhhhccccceEEecCcchhhhhhcchhccCCcc
Confidence 345677888888887663 467788888888888888773 4444445677888888888877653 235667888
Q ss_pred CEEEccCCCCcccc----hhhcCCCCCCEEeeCC
Q 002220 870 EVLDLSGSKIEILP----TSIGQLSRLRQLNLLD 899 (951)
Q Consensus 870 ~~L~L~~n~l~~l~----~~l~~l~~L~~L~L~~ 899 (951)
++|.+-+|.++.-. -.+..+|+|+.|+.++
T Consensus 116 ~~Ltll~Npv~~k~~YR~yvl~klp~l~~LDF~k 149 (233)
T KOG1644|consen 116 EYLTLLGNPVEHKKNYRLYVLYKLPSLRTLDFQK 149 (233)
T ss_pred ceeeecCCchhcccCceeEEEEecCcceEeehhh
Confidence 88888888777443 2356788888888765
No 195
>COG0593 DnaA ATPase involved in DNA replication initiation [DNA replication, recombination, and repair]
Probab=97.28 E-value=0.0053 Score=66.79 Aligned_cols=132 Identities=15% Similarity=0.179 Sum_probs=81.3
Q ss_pred CcEEEEEEecCCChhHHHHHHHHHHhhccccc--eeecccccchhcCCCChHHHHHHHHHHHhcCccccCCCCChHHHHH
Q 002220 208 DFRTIGIWGMGGIGKTTLAGAVFKLISREFEG--KCFMPNVREESENGGGLVYLRDRVVSEIFQEDIKIGTPYLPDYIVE 285 (951)
Q Consensus 208 ~~~vv~I~G~gGiGKTtLA~~~~~~~~~~f~~--~~~~~~~~~~~~~~~~~~~l~~~il~~l~~~~~~~~~~~~~~~l~~ 285 (951)
....+.|||..|.|||.|++++.+......+. ++++. .......+...+... ..+..++
T Consensus 112 ~~nplfi~G~~GlGKTHLl~Aign~~~~~~~~a~v~y~~-----------se~f~~~~v~a~~~~--------~~~~Fk~ 172 (408)
T COG0593 112 AYNPLFIYGGVGLGKTHLLQAIGNEALANGPNARVVYLT-----------SEDFTNDFVKALRDN--------EMEKFKE 172 (408)
T ss_pred cCCcEEEECCCCCCHHHHHHHHHHHHHhhCCCceEEecc-----------HHHHHHHHHHHHHhh--------hHHHHHH
Confidence 46789999999999999999999987777663 34432 122223333333221 1144555
Q ss_pred HhcCCcEEEEEeCCCChH----HHHHHHhccCC-CCCCCEEEEEeCCc---------hhhhhcCCCccceEEcCCCChhh
Q 002220 286 RLNRMKVLTVLDDVNKVR----QLHYLACVLDQ-FGPGSRIIITTRDK---------RILDDFGVCDTDIYEVNKLRFHE 351 (951)
Q Consensus 286 ~l~~~~~LlVlDdv~~~~----~~~~l~~~~~~-~~~gs~IlvTtR~~---------~v~~~~~~~~~~~~~l~~L~~~~ 351 (951)
.. .-=++++||++-.. .-+.+...+.. ...|-.||+|++.. ++.+.+... -++++.+++.+.
T Consensus 173 ~y--~~dlllIDDiq~l~gk~~~qeefFh~FN~l~~~~kqIvltsdr~P~~l~~~~~rL~SR~~~G--l~~~I~~Pd~e~ 248 (408)
T COG0593 173 KY--SLDLLLIDDIQFLAGKERTQEEFFHTFNALLENGKQIVLTSDRPPKELNGLEDRLRSRLEWG--LVVEIEPPDDET 248 (408)
T ss_pred hh--ccCeeeechHhHhcCChhHHHHHHHHHHHHHhcCCEEEEEcCCCchhhccccHHHHHHHhce--eEEeeCCCCHHH
Confidence 55 33488899985321 12222222211 12444899998643 333444443 789999999999
Q ss_pred hHHHHhhhhcc
Q 002220 352 ALVLFSNFAFK 362 (951)
Q Consensus 352 a~~Lf~~~~~~ 362 (951)
....+.+.+..
T Consensus 249 r~aiL~kka~~ 259 (408)
T COG0593 249 RLAILRKKAED 259 (408)
T ss_pred HHHHHHHHHHh
Confidence 99999987643
No 196
>TIGR00763 lon ATP-dependent protease La. This protein is induced by heat shock and other stresses in E. coli, B. subtilis, and other species. The yeast member, designated PIM1, is located in the mitochondrial matrix, required for mitochondrial function, and also induced by heat shock.
Probab=97.26 E-value=0.012 Score=71.84 Aligned_cols=52 Identities=27% Similarity=0.415 Sum_probs=40.5
Q ss_pred CCcccchhhHHHHHHhhc----cCCCCcEEEEEEecCCChhHHHHHHHHHHhhccc
Q 002220 186 DGFVGLNSRIQKIKSLLC----IGLPDFRTIGIWGMGGIGKTTLAGAVFKLISREF 237 (951)
Q Consensus 186 ~~~vGr~~~~~~l~~~L~----~~~~~~~vv~I~G~gGiGKTtLA~~~~~~~~~~f 237 (951)
..++|.+.-.++|.+++. .+.....++.++|++|+|||++|+.+++.+...|
T Consensus 320 ~~~~G~~~~k~~i~~~~~~~~~~~~~~~~~lll~GppG~GKT~lAk~iA~~l~~~~ 375 (775)
T TIGR00763 320 EDHYGLKKVKERILEYLAVQKLRGKMKGPILCLVGPPGVGKTSLGKSIAKALNRKF 375 (775)
T ss_pred hhcCChHHHHHHHHHHHHHHHhhcCCCCceEEEECCCCCCHHHHHHHHHHHhcCCe
Confidence 457899998888887664 1222345899999999999999999999776554
No 197
>PRK10787 DNA-binding ATP-dependent protease La; Provisional
Probab=97.25 E-value=0.013 Score=70.64 Aligned_cols=157 Identities=18% Similarity=0.236 Sum_probs=86.4
Q ss_pred CCcccchhhHHHHHHhhcc----CCCCcEEEEEEecCCChhHHHHHHHHHHhhccccceeecccccchhcCCCChHHHHH
Q 002220 186 DGFVGLNSRIQKIKSLLCI----GLPDFRTIGIWGMGGIGKTTLAGAVFKLISREFEGKCFMPNVREESENGGGLVYLRD 261 (951)
Q Consensus 186 ~~~vGr~~~~~~l~~~L~~----~~~~~~vv~I~G~gGiGKTtLA~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~l~~ 261 (951)
.+.+|.++-.++|.++|.. +.....++.++|++|+||||+|+.++......|-.+.+ ..+++ .
T Consensus 322 ~~~~g~~~vK~~i~~~l~~~~~~~~~~g~~i~l~GppG~GKTtl~~~ia~~l~~~~~~i~~-~~~~d-------~----- 388 (784)
T PRK10787 322 TDHYGLERVKDRILEYLAVQSRVNKIKGPILCLVGPPGVGKTSLGQSIAKATGRKYVRMAL-GGVRD-------E----- 388 (784)
T ss_pred hhccCHHHHHHHHHHHHHHHHhcccCCCceEEEECCCCCCHHHHHHHHHHHhCCCEEEEEc-CCCCC-------H-----
Confidence 4689999999999888762 12345689999999999999999999876555432221 11111 1
Q ss_pred HHHHHHhcCccccCCCCChHHHHHHhc---CCcEEEEEeCCCChHH------HHHHHhccCCC---------------CC
Q 002220 262 RVVSEIFQEDIKIGTPYLPDYIVERLN---RMKVLTVLDDVNKVRQ------LHYLACVLDQF---------------GP 317 (951)
Q Consensus 262 ~il~~l~~~~~~~~~~~~~~~l~~~l~---~~~~LlVlDdv~~~~~------~~~l~~~~~~~---------------~~ 317 (951)
.++.+........ ....+.+.++ ...-+++||.++.... ...+...+... -.
T Consensus 389 ---~~i~g~~~~~~g~-~~G~~~~~l~~~~~~~~villDEidk~~~~~~g~~~~aLlevld~~~~~~~~d~~~~~~~dls 464 (784)
T PRK10787 389 ---AEIRGHRRTYIGS-MPGKLIQKMAKVGVKNPLFLLDEIDKMSSDMRGDPASALLEVLDPEQNVAFSDHYLEVDYDLS 464 (784)
T ss_pred ---HHhccchhccCCC-CCcHHHHHHHhcCCCCCEEEEEChhhcccccCCCHHHHHHHHhccccEEEEecccccccccCC
Confidence 1111111100000 0112222221 2344788999864321 23444333210 13
Q ss_pred CCEEEEEeCCchhhhhcCCCccceEEcCCCChhhhHHHHhhhh
Q 002220 318 GSRIIITTRDKRILDDFGVCDTDIYEVNKLRFHEALVLFSNFA 360 (951)
Q Consensus 318 gs~IlvTtR~~~v~~~~~~~~~~~~~l~~L~~~~a~~Lf~~~~ 360 (951)
...+|.|+....+.... .+...++++.+++.+|-.++..++.
T Consensus 465 ~v~~i~TaN~~~i~~aL-l~R~~ii~~~~~t~eek~~Ia~~~L 506 (784)
T PRK10787 465 DVMFVATSNSMNIPAPL-LDRMEVIRLSGYTEDEKLNIAKRHL 506 (784)
T ss_pred ceEEEEcCCCCCCCHHH-hcceeeeecCCCCHHHHHHHHHHhh
Confidence 34445555443322111 1222678999999999988887765
No 198
>PRK06526 transposase; Provisional
Probab=97.25 E-value=0.0027 Score=65.69 Aligned_cols=28 Identities=25% Similarity=0.166 Sum_probs=23.4
Q ss_pred cEEEEEEecCCChhHHHHHHHHHHhhcc
Q 002220 209 FRTIGIWGMGGIGKTTLAGAVFKLISRE 236 (951)
Q Consensus 209 ~~vv~I~G~gGiGKTtLA~~~~~~~~~~ 236 (951)
..-+.|+|++|+|||+||.++.......
T Consensus 98 ~~nlll~Gp~GtGKThLa~al~~~a~~~ 125 (254)
T PRK06526 98 KENVVFLGPPGTGKTHLAIGLGIRACQA 125 (254)
T ss_pred CceEEEEeCCCCchHHHHHHHHHHHHHC
Confidence 4568999999999999999998865433
No 199
>smart00382 AAA ATPases associated with a variety of cellular activities. AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment.
Probab=97.23 E-value=0.00096 Score=62.71 Aligned_cols=34 Identities=35% Similarity=0.374 Sum_probs=27.0
Q ss_pred EEEEEEecCCChhHHHHHHHHHHhhccccceeec
Q 002220 210 RTIGIWGMGGIGKTTLAGAVFKLISREFEGKCFM 243 (951)
Q Consensus 210 ~vv~I~G~gGiGKTtLA~~~~~~~~~~f~~~~~~ 243 (951)
..+.|+|++|+||||+|+.++.........++++
T Consensus 3 ~~~~l~G~~G~GKTtl~~~l~~~~~~~~~~~~~~ 36 (148)
T smart00382 3 EVILIVGPPGSGKTTLARALARELGPPGGGVIYI 36 (148)
T ss_pred CEEEEECCCCCcHHHHHHHHHhccCCCCCCEEEE
Confidence 5789999999999999999998766554334444
No 200
>COG1373 Predicted ATPase (AAA+ superfamily) [General function prediction only]
Probab=97.23 E-value=0.0043 Score=68.95 Aligned_cols=151 Identities=22% Similarity=0.164 Sum_probs=86.6
Q ss_pred EEEEEecCCChhHHHHHHHHHHhhccccceeecccccchhcCCCChHHHHHHHHHHHhcCccccCCCCChHHHHHHhcCC
Q 002220 211 TIGIWGMGGIGKTTLAGAVFKLISREFEGKCFMPNVREESENGGGLVYLRDRVVSEIFQEDIKIGTPYLPDYIVERLNRM 290 (951)
Q Consensus 211 vv~I~G~gGiGKTtLA~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~l~~~il~~l~~~~~~~~~~~~~~~l~~~l~~~ 290 (951)
++.|.|+-++||||+++.+.....+. .+++........ . ..+ .+.. ..+.+.-..+
T Consensus 39 i~~i~GpR~~GKTtll~~l~~~~~~~---~iy~~~~d~~~~-~---~~l-~d~~----------------~~~~~~~~~~ 94 (398)
T COG1373 39 IILILGPRQVGKTTLLKLLIKGLLEE---IIYINFDDLRLD-R---IEL-LDLL----------------RAYIELKERE 94 (398)
T ss_pred EEEEECCccccHHHHHHHHHhhCCcc---eEEEEecchhcc-h---hhH-HHHH----------------HHHHHhhccC
Confidence 99999999999999997776654444 344421110000 0 111 1111 1111111126
Q ss_pred cEEEEEeCCCChHHHHHHHhccCCCCCCCEEEEEeCCchhhhhc----CCCccceEEcCCCChhhhHHHHhhhhccCCCC
Q 002220 291 KVLTVLDDVNKVRQLHYLACVLDQFGPGSRIIITTRDKRILDDF----GVCDTDIYEVNKLRFHEALVLFSNFAFKENQC 366 (951)
Q Consensus 291 ~~LlVlDdv~~~~~~~~l~~~~~~~~~gs~IlvTtR~~~v~~~~----~~~~~~~~~l~~L~~~~a~~Lf~~~~~~~~~~ 366 (951)
+..++||.|.....|+.....+...++. +|++|+-+....... -......+++.||+..|-..+-...+ .
T Consensus 95 ~~yifLDEIq~v~~W~~~lk~l~d~~~~-~v~itgsss~ll~~~~~~~L~GR~~~~~l~PlSF~Efl~~~~~~~----~- 168 (398)
T COG1373 95 KSYIFLDEIQNVPDWERALKYLYDRGNL-DVLITGSSSSLLSKEISESLAGRGKDLELYPLSFREFLKLKGEEI----E- 168 (398)
T ss_pred CceEEEecccCchhHHHHHHHHHccccc-eEEEECCchhhhccchhhhcCCCceeEEECCCCHHHHHhhccccc----c-
Confidence 7899999999999999988777766666 888888776543211 01123679999999998765432000 0
Q ss_pred ChhHHHHHHHHHHHcCCCchHHHHHh
Q 002220 367 PGDLLALLERVLKYANGNPLALRVLG 392 (951)
Q Consensus 367 ~~~~~~~~~~i~~~~~g~PLal~~~~ 392 (951)
...... .-+---..||.|-++..-.
T Consensus 169 ~~~~~~-~f~~Yl~~GGfP~~v~~~~ 193 (398)
T COG1373 169 PSKLEL-LFEKYLETGGFPESVKADL 193 (398)
T ss_pred hhHHHH-HHHHHHHhCCCcHHHhCcc
Confidence 001111 1112234788888766543
No 201
>PRK10865 protein disaggregation chaperone; Provisional
Probab=97.23 E-value=0.0032 Score=77.09 Aligned_cols=133 Identities=19% Similarity=0.219 Sum_probs=72.7
Q ss_pred CCCcccchhhHHHHHHhhccC-------CCCcEEEEEEecCCChhHHHHHHHHHHhhccccceeecccccchhcCCCChH
Q 002220 185 SDGFVGLNSRIQKIKSLLCIG-------LPDFRTIGIWGMGGIGKTTLAGAVFKLISREFEGKCFMPNVREESENGGGLV 257 (951)
Q Consensus 185 ~~~~vGr~~~~~~l~~~L~~~-------~~~~~vv~I~G~gGiGKTtLA~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~ 257 (951)
...++|.+..++.|...+... .....++.++|+.|+|||++|+.+++.....-...+.+. ..+..
T Consensus 567 ~~~viGQ~~ai~~l~~~i~~~~~gl~~~~~p~~~~Lf~Gp~G~GKT~lA~aLa~~l~~~~~~~i~id-~se~~------- 638 (857)
T PRK10865 567 HHRVIGQNEAVEAVSNAIRRSRAGLSDPNRPIGSFLFLGPTGVGKTELCKALANFMFDSDDAMVRID-MSEFM------- 638 (857)
T ss_pred CCeEeCCHHHHHHHHHHHHHHHhcccCCCCCCceEEEECCCCCCHHHHHHHHHHHhhcCCCcEEEEE-hHHhh-------
Confidence 346899999998888877521 112357889999999999999999986533222223332 11111
Q ss_pred HHHHHHHHHHhcCccccCCCCChHHHHHHhcCCc-EEEEEeCCC--ChHHHHHHHhccCCC----C-------CCCEEEE
Q 002220 258 YLRDRVVSEIFQEDIKIGTPYLPDYIVERLNRMK-VLTVLDDVN--KVRQLHYLACVLDQF----G-------PGSRIII 323 (951)
Q Consensus 258 ~l~~~il~~l~~~~~~~~~~~~~~~l~~~l~~~~-~LlVlDdv~--~~~~~~~l~~~~~~~----~-------~gs~Ilv 323 (951)
.......+.+.............+.+.++.++ -+|+||+++ +...+..+...+..+ + ..+.||+
T Consensus 639 --~~~~~~~LiG~~pgy~g~~~~g~l~~~v~~~p~~vLllDEieka~~~v~~~Ll~ile~g~l~d~~gr~vd~rn~iiI~ 716 (857)
T PRK10865 639 --EKHSVSRLVGAPPGYVGYEEGGYLTEAVRRRPYSVILLDEVEKAHPDVFNILLQVLDDGRLTDGQGRTVDFRNTVVIM 716 (857)
T ss_pred --hhhhHHHHhCCCCcccccchhHHHHHHHHhCCCCeEEEeehhhCCHHHHHHHHHHHhhCceecCCceEEeecccEEEE
Confidence 11122333332222111111233444443333 599999997 344455555444321 1 2234777
Q ss_pred EeCC
Q 002220 324 TTRD 327 (951)
Q Consensus 324 TtR~ 327 (951)
||..
T Consensus 717 TSN~ 720 (857)
T PRK10865 717 TSNL 720 (857)
T ss_pred eCCc
Confidence 8765
No 202
>TIGR03346 chaperone_ClpB ATP-dependent chaperone ClpB. Members of this protein family are the bacterial ATP-dependent chaperone ClpB. This protein belongs to the AAA family, ATPases associated with various cellular activities (pfam00004). This molecular chaperone does not act as a protease, but rather serves to disaggregate misfolded and aggregated proteins.
Probab=97.22 E-value=0.0035 Score=77.03 Aligned_cols=133 Identities=19% Similarity=0.203 Sum_probs=73.5
Q ss_pred CCCcccchhhHHHHHHhhccC------C-CCcEEEEEEecCCChhHHHHHHHHHHhhccccceeecccccchhcCCCChH
Q 002220 185 SDGFVGLNSRIQKIKSLLCIG------L-PDFRTIGIWGMGGIGKTTLAGAVFKLISREFEGKCFMPNVREESENGGGLV 257 (951)
Q Consensus 185 ~~~~vGr~~~~~~l~~~L~~~------~-~~~~vv~I~G~gGiGKTtLA~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~ 257 (951)
...++|.+..++.+...+... . ....++.++|++|+|||++|+.++......-...+.+. ..+...
T Consensus 564 ~~~v~GQ~~av~~v~~~i~~~~~gl~~~~~p~~~~Lf~Gp~GvGKt~lA~~La~~l~~~~~~~i~~d-~s~~~~------ 636 (852)
T TIGR03346 564 HERVVGQDEAVEAVSDAIRRSRAGLSDPNRPIGSFLFLGPTGVGKTELAKALAEFLFDDEDAMVRID-MSEYME------ 636 (852)
T ss_pred hcccCCChHHHHHHHHHHHHHhccCCCCCCCCeEEEEEcCCCCCHHHHHHHHHHHhcCCCCcEEEEe-chhhcc------
Confidence 356899999999998887531 1 12457889999999999999999986533322223322 111111
Q ss_pred HHHHHHHHHHhcCccccCCCCChHHHHHHhcCCc-EEEEEeCCCCh--HHHHHHHhccCCC-----------CCCCEEEE
Q 002220 258 YLRDRVVSEIFQEDIKIGTPYLPDYIVERLNRMK-VLTVLDDVNKV--RQLHYLACVLDQF-----------GPGSRIII 323 (951)
Q Consensus 258 ~l~~~il~~l~~~~~~~~~~~~~~~l~~~l~~~~-~LlVlDdv~~~--~~~~~l~~~~~~~-----------~~gs~Ilv 323 (951)
......+.+...+.........+.+.++.++ .+++||+++.. ..+..+...+..+ -..+-||+
T Consensus 637 ---~~~~~~l~g~~~g~~g~~~~g~l~~~v~~~p~~vlllDeieka~~~v~~~Ll~~l~~g~l~d~~g~~vd~rn~iiI~ 713 (852)
T TIGR03346 637 ---KHSVARLIGAPPGYVGYEEGGQLTEAVRRKPYSVVLFDEVEKAHPDVFNVLLQVLDDGRLTDGQGRTVDFRNTVIIM 713 (852)
T ss_pred ---cchHHHhcCCCCCccCcccccHHHHHHHcCCCcEEEEeccccCCHHHHHHHHHHHhcCceecCCCeEEecCCcEEEE
Confidence 1112222222222111112234544444443 48999999744 3355555544322 12344777
Q ss_pred EeCC
Q 002220 324 TTRD 327 (951)
Q Consensus 324 TtR~ 327 (951)
||.-
T Consensus 714 TSn~ 717 (852)
T TIGR03346 714 TSNL 717 (852)
T ss_pred eCCc
Confidence 7764
No 203
>TIGR01243 CDC48 AAA family ATPase, CDC48 subfamily. This subfamily of the AAA family ATPases includes two members each from three archaeal species. It also includes yeast CDC48 (cell division control protein 48) and the human ortholog, transitional endoplasmic reticulum ATPase (valosin-containing protein). These proteins in eukaryotes are involved in the budding and transfer of membrane from the transitional endoplasmic reticulum to the Golgi apparatus.
Probab=97.19 E-value=0.0038 Score=75.84 Aligned_cols=52 Identities=27% Similarity=0.373 Sum_probs=40.0
Q ss_pred CCCcccchhhHHHHHHhhcc-----------CCCCcEEEEEEecCCChhHHHHHHHHHHhhcc
Q 002220 185 SDGFVGLNSRIQKIKSLLCI-----------GLPDFRTIGIWGMGGIGKTTLAGAVFKLISRE 236 (951)
Q Consensus 185 ~~~~vGr~~~~~~l~~~L~~-----------~~~~~~vv~I~G~gGiGKTtLA~~~~~~~~~~ 236 (951)
.+++.|.+..++++.+.+.. +-...+-+.++|++|+|||+||+.+++.....
T Consensus 177 ~~di~G~~~~~~~l~~~i~~~~~~~~~~~~~gi~~~~giLL~GppGtGKT~laraia~~~~~~ 239 (733)
T TIGR01243 177 YEDIGGLKEAKEKIREMVELPMKHPELFEHLGIEPPKGVLLYGPPGTGKTLLAKAVANEAGAY 239 (733)
T ss_pred HHHhcCHHHHHHHHHHHHHHHhhCHHHHHhcCCCCCceEEEECCCCCChHHHHHHHHHHhCCe
Confidence 35588999999988877631 11234678899999999999999999876544
No 204
>TIGR03345 VI_ClpV1 type VI secretion ATPase, ClpV1 family. Members of this protein family are homologs of ClpB, an ATPase associated with chaperone-related functions. These ClpB homologs, designated ClpV1, are a key component of the bacterial pathogenicity-associated type VI secretion system.
Probab=97.17 E-value=0.0019 Score=78.77 Aligned_cols=118 Identities=20% Similarity=0.191 Sum_probs=65.4
Q ss_pred CCcccchhhHHHHHHhhcc-------CCCCcEEEEEEecCCChhHHHHHHHHHHhhccccceeecccccchhcCCCChHH
Q 002220 186 DGFVGLNSRIQKIKSLLCI-------GLPDFRTIGIWGMGGIGKTTLAGAVFKLISREFEGKCFMPNVREESENGGGLVY 258 (951)
Q Consensus 186 ~~~vGr~~~~~~l~~~L~~-------~~~~~~vv~I~G~gGiGKTtLA~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~ 258 (951)
..++|.+..++.+.+.+.. ......++.++|++|+|||.+|+.++..+-......+-+ +..+...
T Consensus 566 ~~v~GQ~~Av~~v~~~i~~~~~gl~~~~~p~~~~lf~Gp~GvGKT~lA~~La~~l~~~~~~~~~~-dmse~~~------- 637 (852)
T TIGR03345 566 ERVIGQDHALEAIAERIRTARAGLEDPRKPLGVFLLVGPSGVGKTETALALAELLYGGEQNLITI-NMSEFQE------- 637 (852)
T ss_pred CeEcChHHHHHHHHHHHHHHhcCCCCCCCCceEEEEECCCCCCHHHHHHHHHHHHhCCCcceEEE-eHHHhhh-------
Confidence 5789999999988887642 112345789999999999999999988653332211111 1111111
Q ss_pred HHHHHHHHHhcCccccCCCCChHHHHHHhcC-CcEEEEEeCCCChH--HHHHHHhccC
Q 002220 259 LRDRVVSEIFQEDIKIGTPYLPDYIVERLNR-MKVLTVLDDVNKVR--QLHYLACVLD 313 (951)
Q Consensus 259 l~~~il~~l~~~~~~~~~~~~~~~l~~~l~~-~~~LlVlDdv~~~~--~~~~l~~~~~ 313 (951)
..-...+.+...+.........+.+.++. ..-+|+||+++... .++.+...+.
T Consensus 638 --~~~~~~l~g~~~gyvg~~~~g~L~~~v~~~p~svvllDEieka~~~v~~~Llq~ld 693 (852)
T TIGR03345 638 --AHTVSRLKGSPPGYVGYGEGGVLTEAVRRKPYSVVLLDEVEKAHPDVLELFYQVFD 693 (852)
T ss_pred --hhhhccccCCCCCcccccccchHHHHHHhCCCcEEEEechhhcCHHHHHHHHHHhh
Confidence 11122233322222111222344444444 44699999997443 3555554443
No 205
>PRK10536 hypothetical protein; Provisional
Probab=97.15 E-value=0.0029 Score=64.11 Aligned_cols=53 Identities=15% Similarity=0.085 Sum_probs=39.9
Q ss_pred CCcccchhhHHHHHHhhccCCCCcEEEEEEecCCChhHHHHHHHHHH-h-hccccceee
Q 002220 186 DGFVGLNSRIQKIKSLLCIGLPDFRTIGIWGMGGIGKTTLAGAVFKL-I-SREFEGKCF 242 (951)
Q Consensus 186 ~~~vGr~~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~~~~~-~-~~~f~~~~~ 242 (951)
..+.++......+..++.. ...|.+.|.+|.|||+||.+++.. + .+.|..++.
T Consensus 55 ~~i~p~n~~Q~~~l~al~~----~~lV~i~G~aGTGKT~La~a~a~~~l~~~~~~kIiI 109 (262)
T PRK10536 55 SPILARNEAQAHYLKAIES----KQLIFATGEAGCGKTWISAAKAAEALIHKDVDRIIV 109 (262)
T ss_pred ccccCCCHHHHHHHHHHhc----CCeEEEECCCCCCHHHHHHHHHHHHHhcCCeeEEEE
Confidence 4567788888888887743 349999999999999999998873 3 445654443
No 206
>PRK00771 signal recognition particle protein Srp54; Provisional
Probab=97.15 E-value=0.016 Score=64.52 Aligned_cols=29 Identities=31% Similarity=0.436 Sum_probs=25.4
Q ss_pred CcEEEEEEecCCChhHHHHHHHHHHhhcc
Q 002220 208 DFRTIGIWGMGGIGKTTLAGAVFKLISRE 236 (951)
Q Consensus 208 ~~~vv~I~G~gGiGKTtLA~~~~~~~~~~ 236 (951)
...+|.++|.+|+||||+|..++..++.+
T Consensus 94 ~p~vI~lvG~~GsGKTTtaakLA~~L~~~ 122 (437)
T PRK00771 94 KPQTIMLVGLQGSGKTTTAAKLARYFKKK 122 (437)
T ss_pred CCeEEEEECCCCCcHHHHHHHHHHHHHHc
Confidence 46899999999999999999999877654
No 207
>TIGR01243 CDC48 AAA family ATPase, CDC48 subfamily. This subfamily of the AAA family ATPases includes two members each from three archaeal species. It also includes yeast CDC48 (cell division control protein 48) and the human ortholog, transitional endoplasmic reticulum ATPase (valosin-containing protein). These proteins in eukaryotes are involved in the budding and transfer of membrane from the transitional endoplasmic reticulum to the Golgi apparatus.
Probab=97.15 E-value=0.0054 Score=74.56 Aligned_cols=171 Identities=18% Similarity=0.167 Sum_probs=93.4
Q ss_pred CCcccchhhHHHHHHhhcc-----------CCCCcEEEEEEecCCChhHHHHHHHHHHhhccccceeecccccchhcCCC
Q 002220 186 DGFVGLNSRIQKIKSLLCI-----------GLPDFRTIGIWGMGGIGKTTLAGAVFKLISREFEGKCFMPNVREESENGG 254 (951)
Q Consensus 186 ~~~vGr~~~~~~l~~~L~~-----------~~~~~~vv~I~G~gGiGKTtLA~~~~~~~~~~f~~~~~~~~~~~~~~~~~ 254 (951)
.++.|.+...++|.+.+.. +-...+-+.++|++|+|||++|+++++.....|- .+. ..
T Consensus 453 ~di~g~~~~k~~l~~~v~~~~~~~~~~~~~g~~~~~giLL~GppGtGKT~lakalA~e~~~~fi---~v~-~~------- 521 (733)
T TIGR01243 453 SDIGGLEEVKQELREAVEWPLKHPEIFEKMGIRPPKGVLLFGPPGTGKTLLAKAVATESGANFI---AVR-GP------- 521 (733)
T ss_pred hhcccHHHHHHHHHHHHHhhhhCHHHHHhcCCCCCceEEEECCCCCCHHHHHHHHHHhcCCCEE---EEe-hH-------
Confidence 4578888888888776531 1123456889999999999999999997654431 111 00
Q ss_pred ChHHHHHHHHHHHhcCccccCCCCCh-HHHHHHhcCCcEEEEEeCCCChH--------------HHHHHHhccCC--CCC
Q 002220 255 GLVYLRDRVVSEIFQEDIKIGTPYLP-DYIVERLNRMKVLTVLDDVNKVR--------------QLHYLACVLDQ--FGP 317 (951)
Q Consensus 255 ~~~~l~~~il~~l~~~~~~~~~~~~~-~~l~~~l~~~~~LlVlDdv~~~~--------------~~~~l~~~~~~--~~~ 317 (951)
.++....+. ..... ......-+..+.+|++|+++... ....+...+.. ...
T Consensus 522 -------~l~~~~vGe-----se~~i~~~f~~A~~~~p~iifiDEid~l~~~r~~~~~~~~~~~~~~~lL~~ldg~~~~~ 589 (733)
T TIGR01243 522 -------EILSKWVGE-----SEKAIREIFRKARQAAPAIIFFDEIDAIAPARGARFDTSVTDRIVNQLLTEMDGIQELS 589 (733)
T ss_pred -------HHhhcccCc-----HHHHHHHHHHHHHhcCCEEEEEEChhhhhccCCCCCCccHHHHHHHHHHHHhhcccCCC
Confidence 001000000 00000 11222223567899999985321 12333333332 123
Q ss_pred CCEEEEEeCCchhhhhc-----CCCccceEEcCCCChhhhHHHHhhhhccCCCC-ChhHHHHHHHHHHHcCCCc
Q 002220 318 GSRIIITTRDKRILDDF-----GVCDTDIYEVNKLRFHEALVLFSNFAFKENQC-PGDLLALLERVLKYANGNP 385 (951)
Q Consensus 318 gs~IlvTtR~~~v~~~~-----~~~~~~~~~l~~L~~~~a~~Lf~~~~~~~~~~-~~~~~~~~~~i~~~~~g~P 385 (951)
+..||.||...+..... ..+ ..+.++..+.++-.++|..+.-+.... ..+ ...+++.+.|.-
T Consensus 590 ~v~vI~aTn~~~~ld~allRpgRfd--~~i~v~~Pd~~~R~~i~~~~~~~~~~~~~~~----l~~la~~t~g~s 657 (733)
T TIGR01243 590 NVVVIAATNRPDILDPALLRPGRFD--RLILVPPPDEEARKEIFKIHTRSMPLAEDVD----LEELAEMTEGYT 657 (733)
T ss_pred CEEEEEeCCChhhCCHhhcCCCccc--eEEEeCCcCHHHHHHHHHHHhcCCCCCccCC----HHHHHHHcCCCC
Confidence 45566677655443221 234 678999999999999997665332211 112 345566666653
No 208
>PRK08058 DNA polymerase III subunit delta'; Validated
Probab=97.14 E-value=0.014 Score=63.30 Aligned_cols=151 Identities=13% Similarity=0.091 Sum_probs=85.4
Q ss_pred Cccc-chhhHHHHHHhhccCCCCcEEEEEEecCCChhHHHHHHHHHHhhcc---------------------ccceeecc
Q 002220 187 GFVG-LNSRIQKIKSLLCIGLPDFRTIGIWGMGGIGKTTLAGAVFKLISRE---------------------FEGKCFMP 244 (951)
Q Consensus 187 ~~vG-r~~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~~~~~~~~~---------------------f~~~~~~~ 244 (951)
.++| -+.-++.+...+..+ .-.+...++|+.|+||||+|+.+++.+-.. ++...++.
T Consensus 6 ~i~~~q~~~~~~L~~~~~~~-~l~ha~Lf~G~~G~gk~~~a~~la~~l~c~~~~~~~~cg~C~~c~~~~~~~hpD~~~i~ 84 (329)
T PRK08058 6 QLTALQPVVVKMLQNSIAKN-RLSHAYLFEGAKGTGKKATALWLAKSLFCLERNGVEPCGTCTNCKRIDSGNHPDVHLVA 84 (329)
T ss_pred HHHhhHHHHHHHHHHHHHcC-CCCceEEEECCCCCCHHHHHHHHHHHHCCCCCCCCCCCCcCHHHHHHhcCCCCCEEEec
Confidence 3556 566667777777432 235677999999999999999998864211 11111110
Q ss_pred cccchhcCCCChHHHHHHHHHHHhcCccccCCCCChHHHHHHhcCCcEEEEEeCCCCh--HHHHHHHhccCCCCCCCEEE
Q 002220 245 NVREESENGGGLVYLRDRVVSEIFQEDIKIGTPYLPDYIVERLNRMKVLTVLDDVNKV--RQLHYLACVLDQFGPGSRII 322 (951)
Q Consensus 245 ~~~~~~~~~~~~~~l~~~il~~l~~~~~~~~~~~~~~~l~~~l~~~~~LlVlDdv~~~--~~~~~l~~~~~~~~~gs~Il 322 (951)
.. .....+..+. .+...+... -..+++-++|+|+++.. .....++..+....+++.+|
T Consensus 85 ~~----~~~i~id~ir-~l~~~~~~~---------------~~~~~~kvviI~~a~~~~~~a~NaLLK~LEEPp~~~~~I 144 (329)
T PRK08058 85 PD----GQSIKKDQIR-YLKEEFSKS---------------GVESNKKVYIIEHADKMTASAANSLLKFLEEPSGGTTAI 144 (329)
T ss_pred cc----cccCCHHHHH-HHHHHHhhC---------------CcccCceEEEeehHhhhCHHHHHHHHHHhcCCCCCceEE
Confidence 00 0000111111 111111000 01234557899998644 34666777766656777777
Q ss_pred EEeCCc-hhhhhcCCCccceEEcCCCChhhhHHHHhhh
Q 002220 323 ITTRDK-RILDDFGVCDTDIYEVNKLRFHEALVLFSNF 359 (951)
Q Consensus 323 vTtR~~-~v~~~~~~~~~~~~~l~~L~~~~a~~Lf~~~ 359 (951)
++|.+. .+..... .....+++.+++.++..+.+...
T Consensus 145 l~t~~~~~ll~TIr-SRc~~i~~~~~~~~~~~~~L~~~ 181 (329)
T PRK08058 145 LLTENKHQILPTIL-SRCQVVEFRPLPPESLIQRLQEE 181 (329)
T ss_pred EEeCChHhCcHHHH-hhceeeeCCCCCHHHHHHHHHHc
Confidence 777654 2322211 11278999999999998888754
No 209
>CHL00195 ycf46 Ycf46; Provisional
Probab=97.12 E-value=0.0064 Score=68.90 Aligned_cols=175 Identities=16% Similarity=0.088 Sum_probs=91.0
Q ss_pred CCCcccchhhHHHHHHhhc--------cCCCCcEEEEEEecCCChhHHHHHHHHHHhhccccceeecccccchhcCCCCh
Q 002220 185 SDGFVGLNSRIQKIKSLLC--------IGLPDFRTIGIWGMGGIGKTTLAGAVFKLISREFEGKCFMPNVREESENGGGL 256 (951)
Q Consensus 185 ~~~~vGr~~~~~~l~~~L~--------~~~~~~~vv~I~G~gGiGKTtLA~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~ 256 (951)
..++.|.+...+.+..... .+-...+-|.++|++|+|||.+|+++++.....|-. + ..........+.
T Consensus 227 ~~dvgGl~~lK~~l~~~~~~~~~~~~~~gl~~pkGILL~GPpGTGKTllAkaiA~e~~~~~~~---l-~~~~l~~~~vGe 302 (489)
T CHL00195 227 ISDIGGLDNLKDWLKKRSTSFSKQASNYGLPTPRGLLLVGIQGTGKSLTAKAIANDWQLPLLR---L-DVGKLFGGIVGE 302 (489)
T ss_pred HHHhcCHHHHHHHHHHHHHHhhHHHHhcCCCCCceEEEECCCCCcHHHHHHHHHHHhCCCEEE---E-EhHHhcccccCh
Confidence 3567788776666654221 112345779999999999999999999876433211 1 110000000000
Q ss_pred -HHHHHHHHHHHhcCccccCCCCChHHHHHHhcCCcEEEEEeCCCChHH--------------HHHHHhccCCCCCCCEE
Q 002220 257 -VYLRDRVVSEIFQEDIKIGTPYLPDYIVERLNRMKVLTVLDDVNKVRQ--------------LHYLACVLDQFGPGSRI 321 (951)
Q Consensus 257 -~~l~~~il~~l~~~~~~~~~~~~~~~l~~~l~~~~~LlVlDdv~~~~~--------------~~~l~~~~~~~~~gs~I 321 (951)
....+ +.+...-...+++|++|+++.... +..+...+.....+.-|
T Consensus 303 se~~l~-------------------~~f~~A~~~~P~IL~IDEID~~~~~~~~~~d~~~~~rvl~~lL~~l~~~~~~V~v 363 (489)
T CHL00195 303 SESRMR-------------------QMIRIAEALSPCILWIDEIDKAFSNSESKGDSGTTNRVLATFITWLSEKKSPVFV 363 (489)
T ss_pred HHHHHH-------------------HHHHHHHhcCCcEEEehhhhhhhccccCCCCchHHHHHHHHHHHHHhcCCCceEE
Confidence 00011 111111234688999999863210 11222222222344456
Q ss_pred EEEeCCchhhh-----hcCCCccceEEcCCCChhhhHHHHhhhhccCCCCChhHHHHHHHHHHHcCCCc
Q 002220 322 IITTRDKRILD-----DFGVCDTDIYEVNKLRFHEALVLFSNFAFKENQCPGDLLALLERVLKYANGNP 385 (951)
Q Consensus 322 lvTtR~~~v~~-----~~~~~~~~~~~l~~L~~~~a~~Lf~~~~~~~~~~~~~~~~~~~~i~~~~~g~P 385 (951)
|.||....... ....+ ..+.++..+.++-.++|..+..+....... ..-...+++.+.|..
T Consensus 364 IaTTN~~~~Ld~allR~GRFD--~~i~v~lP~~~eR~~Il~~~l~~~~~~~~~-~~dl~~La~~T~GfS 429 (489)
T CHL00195 364 VATANNIDLLPLEILRKGRFD--EIFFLDLPSLEEREKIFKIHLQKFRPKSWK-KYDIKKLSKLSNKFS 429 (489)
T ss_pred EEecCChhhCCHHHhCCCcCC--eEEEeCCcCHHHHHHHHHHHHhhcCCCccc-ccCHHHHHhhcCCCC
Confidence 66776553221 11344 678899999999999998876432211000 011345556666553
No 210
>KOG0991 consensus Replication factor C, subunit RFC2 [Replication, recombination and repair]
Probab=97.11 E-value=0.0055 Score=59.54 Aligned_cols=50 Identities=18% Similarity=0.239 Sum_probs=40.0
Q ss_pred CCCCCCcccchhhHHHHHHhhccCCCCcEEEEEEecCCChhHHHHHHHHHHh
Q 002220 182 STYSDGFVGLNSRIQKIKSLLCIGLPDFRTIGIWGMGGIGKTTLAGAVFKLI 233 (951)
Q Consensus 182 ~~~~~~~vGr~~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~~~~~~ 233 (951)
|..-.++||-++-++.+.-.- .+++..-+.|.||+|+||||-+..+++++
T Consensus 23 P~~l~dIVGNe~tv~rl~via--~~gnmP~liisGpPG~GKTTsi~~LAr~L 72 (333)
T KOG0991|consen 23 PSVLQDIVGNEDTVERLSVIA--KEGNMPNLIISGPPGTGKTTSILCLAREL 72 (333)
T ss_pred chHHHHhhCCHHHHHHHHHHH--HcCCCCceEeeCCCCCchhhHHHHHHHHH
Confidence 344567999999888887654 34567788899999999999999999864
No 211
>PRK06871 DNA polymerase III subunit delta'; Validated
Probab=97.11 E-value=0.018 Score=61.56 Aligned_cols=175 Identities=12% Similarity=0.099 Sum_probs=94.6
Q ss_pred HHHHHHhhccCCCCcEEEEEEecCCChhHHHHHHHHHHhhccccceeecccccchhcCCCChHHHHHHHHHHHhcCc---
Q 002220 195 IQKIKSLLCIGLPDFRTIGIWGMGGIGKTTLAGAVFKLISREFEGKCFMPNVREESENGGGLVYLRDRVVSEIFQED--- 271 (951)
Q Consensus 195 ~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~l~~~il~~l~~~~--- 271 (951)
.+.+...+..+ .-.....++|+.|+||+++|+.++..+-..-.... . ..+.-..-+.+...-...-
T Consensus 11 ~~~l~~~~~~~-rl~HA~Lf~G~~G~GK~~lA~~~A~~llC~~~~~~------~----~Cg~C~sC~~~~~g~HPD~~~i 79 (325)
T PRK06871 11 YQQITQAFQQG-LGHHALLFKADSGLGTEQLIRALAQWLMCQTPQGD------Q----PCGQCHSCHLFQAGNHPDFHIL 79 (325)
T ss_pred HHHHHHHHHcC-CcceeEEeECCCCCCHHHHHHHHHHHHcCCCCCCC------C----CCCCCHHHHHHhcCCCCCEEEE
Confidence 34455555322 23467889999999999999999985422110000 0 0000000001100000000
Q ss_pred cccCCCCCh-HHHHH---Hh-----cCCcEEEEEeCCCCh--HHHHHHHhccCCCCCCCEEEEEeCCc-hhhhhcCCCcc
Q 002220 272 IKIGTPYLP-DYIVE---RL-----NRMKVLTVLDDVNKV--RQLHYLACVLDQFGPGSRIIITTRDK-RILDDFGVCDT 339 (951)
Q Consensus 272 ~~~~~~~~~-~~l~~---~l-----~~~~~LlVlDdv~~~--~~~~~l~~~~~~~~~gs~IlvTtR~~-~v~~~~~~~~~ 339 (951)
.+....... +.+++ .+ .+++=++|+|+++.. .....++..+....+++.+|++|.+. .+...... ..
T Consensus 80 ~p~~~~~I~id~iR~l~~~~~~~~~~g~~KV~iI~~a~~m~~~AaNaLLKtLEEPp~~~~fiL~t~~~~~llpTI~S-RC 158 (325)
T PRK06871 80 EPIDNKDIGVDQVREINEKVSQHAQQGGNKVVYIQGAERLTEAAANALLKTLEEPRPNTYFLLQADLSAALLPTIYS-RC 158 (325)
T ss_pred ccccCCCCCHHHHHHHHHHHhhccccCCceEEEEechhhhCHHHHHHHHHHhcCCCCCeEEEEEECChHhCchHHHh-hc
Confidence 000000111 33332 22 245568889999754 44667777766666777777777665 44333211 12
Q ss_pred ceEEcCCCChhhhHHHHhhhhccCCCCChhHHHHHHHHHHHcCCCchHH
Q 002220 340 DIYEVNKLRFHEALVLFSNFAFKENQCPGDLLALLERVLKYANGNPLAL 388 (951)
Q Consensus 340 ~~~~l~~L~~~~a~~Lf~~~~~~~~~~~~~~~~~~~~i~~~~~g~PLal 388 (951)
..+.+.+++.+++.+.+...... .. ..+..++..++|.|+..
T Consensus 159 ~~~~~~~~~~~~~~~~L~~~~~~----~~---~~~~~~~~l~~g~p~~A 200 (325)
T PRK06871 159 QTWLIHPPEEQQALDWLQAQSSA----EI---SEILTALRINYGRPLLA 200 (325)
T ss_pred eEEeCCCCCHHHHHHHHHHHhcc----Ch---HHHHHHHHHcCCCHHHH
Confidence 78999999999999998876411 11 13556788899999643
No 212
>PLN00020 ribulose bisphosphate carboxylase/oxygenase activase -RuBisCO activase (RCA); Provisional
Probab=97.10 E-value=0.0097 Score=63.13 Aligned_cols=31 Identities=35% Similarity=0.453 Sum_probs=26.9
Q ss_pred CCcEEEEEEecCCChhHHHHHHHHHHhhccc
Q 002220 207 PDFRTIGIWGMGGIGKTTLAGAVFKLISREF 237 (951)
Q Consensus 207 ~~~~vv~I~G~gGiGKTtLA~~~~~~~~~~f 237 (951)
..++.++|||++|.|||.+|++++......|
T Consensus 146 k~PlgllL~GPPGcGKTllAraiA~elg~~~ 176 (413)
T PLN00020 146 KVPLILGIWGGKGQGKSFQCELVFKKMGIEP 176 (413)
T ss_pred CCCeEEEeeCCCCCCHHHHHHHHHHHcCCCe
Confidence 4568999999999999999999999876554
No 213
>PRK06090 DNA polymerase III subunit delta'; Validated
Probab=97.10 E-value=0.052 Score=57.89 Aligned_cols=93 Identities=16% Similarity=0.199 Sum_probs=62.2
Q ss_pred CCcEEEEEeCCCCh--HHHHHHHhccCCCCCCCEEEEEeCCc-hhhhhcCCCccceEEcCCCChhhhHHHHhhhhccCCC
Q 002220 289 RMKVLTVLDDVNKV--RQLHYLACVLDQFGPGSRIIITTRDK-RILDDFGVCDTDIYEVNKLRFHEALVLFSNFAFKENQ 365 (951)
Q Consensus 289 ~~~~LlVlDdv~~~--~~~~~l~~~~~~~~~gs~IlvTtR~~-~v~~~~~~~~~~~~~l~~L~~~~a~~Lf~~~~~~~~~ 365 (951)
+++=++|+|+++.. .....++..+....+++.+|++|.+. .+...... ....+.+.+++.+++.+.+.....
T Consensus 107 ~~~kV~iI~~ae~m~~~AaNaLLKtLEEPp~~t~fiL~t~~~~~lLpTI~S-RCq~~~~~~~~~~~~~~~L~~~~~---- 181 (319)
T PRK06090 107 NGYRLFVIEPADAMNESASNALLKTLEEPAPNCLFLLVTHNQKRLLPTIVS-RCQQWVVTPPSTAQAMQWLKGQGI---- 181 (319)
T ss_pred CCceEEEecchhhhCHHHHHHHHHHhcCCCCCeEEEEEECChhhChHHHHh-cceeEeCCCCCHHHHHHHHHHcCC----
Confidence 34558889998744 44666776666656777777666654 44433211 127899999999999998876421
Q ss_pred CChhHHHHHHHHHHHcCCCchHHHHHh
Q 002220 366 CPGDLLALLERVLKYANGNPLALRVLG 392 (951)
Q Consensus 366 ~~~~~~~~~~~i~~~~~g~PLal~~~~ 392 (951)
+ .+..++..++|.|+....+.
T Consensus 182 --~----~~~~~l~l~~G~p~~A~~~~ 202 (319)
T PRK06090 182 --T----VPAYALKLNMGSPLKTLAMM 202 (319)
T ss_pred --c----hHHHHHHHcCCCHHHHHHHh
Confidence 1 13467889999998766553
No 214
>PRK09183 transposase/IS protein; Provisional
Probab=97.07 E-value=0.002 Score=67.13 Aligned_cols=35 Identities=31% Similarity=0.186 Sum_probs=25.3
Q ss_pred cEEEEEEecCCChhHHHHHHHHHHhhccccceeec
Q 002220 209 FRTIGIWGMGGIGKTTLAGAVFKLISREFEGKCFM 243 (951)
Q Consensus 209 ~~vv~I~G~gGiGKTtLA~~~~~~~~~~f~~~~~~ 243 (951)
...+.|+|++|+|||+||..++......-..+.|+
T Consensus 102 ~~~v~l~Gp~GtGKThLa~al~~~a~~~G~~v~~~ 136 (259)
T PRK09183 102 NENIVLLGPSGVGKTHLAIALGYEAVRAGIKVRFT 136 (259)
T ss_pred CCeEEEEeCCCCCHHHHHHHHHHHHHHcCCeEEEE
Confidence 35688999999999999999987643332233343
No 215
>KOG2004 consensus Mitochondrial ATP-dependent protease PIM1/LON [Posttranslational modification, protein turnover, chaperones]
Probab=97.06 E-value=0.0054 Score=69.32 Aligned_cols=154 Identities=19% Similarity=0.295 Sum_probs=89.0
Q ss_pred CCCcccchhhHHHHHHhhc----cCCCCcEEEEEEecCCChhHHHHHHHHHHhhccccceeecccccchhcCCCChHHHH
Q 002220 185 SDGFVGLNSRIQKIKSLLC----IGLPDFRTIGIWGMGGIGKTTLAGAVFKLISREFEGKCFMPNVREESENGGGLVYLR 260 (951)
Q Consensus 185 ~~~~vGr~~~~~~l~~~L~----~~~~~~~vv~I~G~gGiGKTtLA~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~l~ 260 (951)
..+.+|+++-.++|.+.+. .++.+-++++.+|++|||||.+|+.++..+...|-. +-+ +...+
T Consensus 410 deDHYgm~dVKeRILEfiAV~kLrgs~qGkIlCf~GPPGVGKTSI~kSIA~ALnRkFfR-fSv---GG~tD--------- 476 (906)
T KOG2004|consen 410 DEDHYGMEDVKERILEFIAVGKLRGSVQGKILCFVGPPGVGKTSIAKSIARALNRKFFR-FSV---GGMTD--------- 476 (906)
T ss_pred cccccchHHHHHHHHHHHHHHhhcccCCCcEEEEeCCCCCCcccHHHHHHHHhCCceEE-Eec---ccccc---------
Confidence 3568999999999999886 334556899999999999999999999977666531 112 22111
Q ss_pred HHHHHHHhcCccccCCCCChHHHHHHhc---CCcEEEEEeCCCChHH------HHHHHhccCCC-------------CCC
Q 002220 261 DRVVSEIFQEDIKIGTPYLPDYIVERLN---RMKVLTVLDDVNKVRQ------LHYLACVLDQF-------------GPG 318 (951)
Q Consensus 261 ~~il~~l~~~~~~~~~~~~~~~l~~~l~---~~~~LlVlDdv~~~~~------~~~l~~~~~~~-------------~~g 318 (951)
.+++.+...... ......+.+.|+ ...-|+.+|.|+.... -.+++..+.+- -.=
T Consensus 477 ---vAeIkGHRRTYV-GAMPGkiIq~LK~v~t~NPliLiDEvDKlG~g~qGDPasALLElLDPEQNanFlDHYLdVp~DL 552 (906)
T KOG2004|consen 477 ---VAEIKGHRRTYV-GAMPGKIIQCLKKVKTENPLILIDEVDKLGSGHQGDPASALLELLDPEQNANFLDHYLDVPVDL 552 (906)
T ss_pred ---HHhhcccceeee-ccCChHHHHHHHhhCCCCceEEeehhhhhCCCCCCChHHHHHHhcChhhccchhhhccccccch
Confidence 111222211111 111234444443 3556888999864321 22222222111 123
Q ss_pred CEEEE-EeCCc------hhhhhcCCCccceEEcCCCChhhhHHHHhhhh
Q 002220 319 SRIII-TTRDK------RILDDFGVCDTDIYEVNKLRFHEALVLFSNFA 360 (951)
Q Consensus 319 s~Ilv-TtR~~------~v~~~~~~~~~~~~~l~~L~~~~a~~Lf~~~~ 360 (951)
|+|+. .|-+. .+...| .++++.+...+|-..+-.++.
T Consensus 553 SkVLFicTAN~idtIP~pLlDRM-----EvIelsGYv~eEKv~IA~~yL 596 (906)
T KOG2004|consen 553 SKVLFICTANVIDTIPPPLLDRM-----EVIELSGYVAEEKVKIAERYL 596 (906)
T ss_pred hheEEEEeccccccCChhhhhhh-----heeeccCccHHHHHHHHHHhh
Confidence 56653 33322 223333 789999999888777766654
No 216
>PF01695 IstB_IS21: IstB-like ATP binding protein; InterPro: IPR002611 Proteins in this entry contain an ATP/GTP binding P-loop motif. They are found associated with IS21 family insertion sequences []. Functionally they have not been characterised, but they may be involved in transposition [].; GO: 0005524 ATP binding; PDB: 3EC2_A 3ECC_A 2W58_A 2QGZ_A.
Probab=97.05 E-value=0.00084 Score=65.45 Aligned_cols=35 Identities=29% Similarity=0.267 Sum_probs=25.2
Q ss_pred cEEEEEEecCCChhHHHHHHHHHHhhccccceeec
Q 002220 209 FRTIGIWGMGGIGKTTLAGAVFKLISREFEGKCFM 243 (951)
Q Consensus 209 ~~vv~I~G~gGiGKTtLA~~~~~~~~~~f~~~~~~ 243 (951)
..-+.++|.+|+|||.||.++++....+-..+.|+
T Consensus 47 ~~~l~l~G~~G~GKThLa~ai~~~~~~~g~~v~f~ 81 (178)
T PF01695_consen 47 GENLILYGPPGTGKTHLAVAIANEAIRKGYSVLFI 81 (178)
T ss_dssp --EEEEEESTTSSHHHHHHHHHHHHHHTT--EEEE
T ss_pred CeEEEEEhhHhHHHHHHHHHHHHHhccCCcceeEe
Confidence 35699999999999999999998654433335555
No 217
>PRK07993 DNA polymerase III subunit delta'; Validated
Probab=97.05 E-value=0.015 Score=62.91 Aligned_cols=175 Identities=15% Similarity=0.117 Sum_probs=94.7
Q ss_pred HHHHHHhhccCCCCcEEEEEEecCCChhHHHHHHHHHHhhcc--cc-ceeecc-cccc-hhcCCCChHHHHHHHHHHHhc
Q 002220 195 IQKIKSLLCIGLPDFRTIGIWGMGGIGKTTLAGAVFKLISRE--FE-GKCFMP-NVRE-ESENGGGLVYLRDRVVSEIFQ 269 (951)
Q Consensus 195 ~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~~~~~~~~~--f~-~~~~~~-~~~~-~~~~~~~~~~l~~~il~~l~~ 269 (951)
.+++...+.. +.-...+.++|+.|+||+++|.+++..+-.. -. ..|=.+ ..+. .....+++..+ .
T Consensus 11 ~~~l~~~~~~-~rl~HA~Lf~G~~G~Gk~~lA~~~A~~LlC~~~~~~~~Cg~C~sC~~~~~g~HPD~~~i--------~- 80 (334)
T PRK07993 11 YEQLVGSYQA-GRGHHALLIQALPGMGDDALIYALSRWLMCQQPQGHKSCGHCRGCQLMQAGTHPDYYTL--------T- 80 (334)
T ss_pred HHHHHHHHHc-CCcceEEeeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcCCCCCEEEE--------e-
Confidence 4455555532 2335688899999999999999999854211 00 000000 0000 00001111000 0
Q ss_pred CccccCCCCCh-HHHHH---Hh-----cCCcEEEEEeCCCCh--HHHHHHHhccCCCCCCCEEEEEeCCc-hhhhhcCCC
Q 002220 270 EDIKIGTPYLP-DYIVE---RL-----NRMKVLTVLDDVNKV--RQLHYLACVLDQFGPGSRIIITTRDK-RILDDFGVC 337 (951)
Q Consensus 270 ~~~~~~~~~~~-~~l~~---~l-----~~~~~LlVlDdv~~~--~~~~~l~~~~~~~~~gs~IlvTtR~~-~v~~~~~~~ 337 (951)
. ........ +.+++ .+ .+++=++|+|+++.. .....++..+....+++.+|++|.+. .+......
T Consensus 81 p--~~~~~~I~idqiR~l~~~~~~~~~~g~~kV~iI~~ae~m~~~AaNaLLKtLEEPp~~t~fiL~t~~~~~lLpTIrS- 157 (334)
T PRK07993 81 P--EKGKSSLGVDAVREVTEKLYEHARLGGAKVVWLPDAALLTDAAANALLKTLEEPPENTWFFLACREPARLLATLRS- 157 (334)
T ss_pred c--ccccccCCHHHHHHHHHHHhhccccCCceEEEEcchHhhCHHHHHHHHHHhcCCCCCeEEEEEECChhhChHHHHh-
Confidence 0 00000011 33332 22 245668899998744 44666777666656777777777654 34433211
Q ss_pred ccceEEcCCCChhhhHHHHhhhhccCCCCChhHHHHHHHHHHHcCCCchHHH
Q 002220 338 DTDIYEVNKLRFHEALVLFSNFAFKENQCPGDLLALLERVLKYANGNPLALR 389 (951)
Q Consensus 338 ~~~~~~l~~L~~~~a~~Lf~~~~~~~~~~~~~~~~~~~~i~~~~~g~PLal~ 389 (951)
....+.+.+++.+++.+.+.... + . ++ +.+..++..++|.|....
T Consensus 158 RCq~~~~~~~~~~~~~~~L~~~~-~--~-~~---~~a~~~~~la~G~~~~Al 202 (334)
T PRK07993 158 RCRLHYLAPPPEQYALTWLSREV-T--M-SQ---DALLAALRLSAGAPGAAL 202 (334)
T ss_pred ccccccCCCCCHHHHHHHHHHcc-C--C-CH---HHHHHHHHHcCCCHHHHH
Confidence 11678999999999998886542 1 1 11 236678899999996443
No 218
>COG3267 ExeA Type II secretory pathway, component ExeA (predicted ATPase) [Intracellular trafficking and secretion]
Probab=97.05 E-value=0.015 Score=57.95 Aligned_cols=178 Identities=15% Similarity=0.121 Sum_probs=97.9
Q ss_pred CCcEEEEEEecCCChhHHHHHHHHHHhhccccceeecccccchhcCCCChHHHHHHHHHHHhcCccccCCCCCh-HHHHH
Q 002220 207 PDFRTIGIWGMGGIGKTTLAGAVFKLISREFEGKCFMPNVREESENGGGLVYLRDRVVSEIFQEDIKIGTPYLP-DYIVE 285 (951)
Q Consensus 207 ~~~~vv~I~G~gGiGKTtLA~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~l~~~il~~l~~~~~~~~~~~~~-~~l~~ 285 (951)
++.+++.++|.-|.|||.++++.....-+.=..++.++ ........+...+..++... +....... +.+.+
T Consensus 49 d~qg~~~vtGevGsGKTv~~Ral~~s~~~d~~~~v~i~------~~~~s~~~~~~ai~~~l~~~--p~~~~~~~~e~~~~ 120 (269)
T COG3267 49 DGQGILAVTGEVGSGKTVLRRALLASLNEDQVAVVVID------KPTLSDATLLEAIVADLESQ--PKVNVNAVLEQIDR 120 (269)
T ss_pred cCCceEEEEecCCCchhHHHHHHHHhcCCCceEEEEec------CcchhHHHHHHHHHHHhccC--ccchhHHHHHHHHH
Confidence 45579999999999999999965554432222233332 11344556667777776551 11111111 22322
Q ss_pred Hh-----cCCc-EEEEEeCCCCh--HHHHHHH---hccCCCCCCCEEEEEeCCc-------hhhhhcCCCccce-EEcCC
Q 002220 286 RL-----NRMK-VLTVLDDVNKV--RQLHYLA---CVLDQFGPGSRIIITTRDK-------RILDDFGVCDTDI-YEVNK 346 (951)
Q Consensus 286 ~l-----~~~~-~LlVlDdv~~~--~~~~~l~---~~~~~~~~gs~IlvTtR~~-------~v~~~~~~~~~~~-~~l~~ 346 (951)
.| +++| +.+++|+..+. +.++.+. ..-..+..--+|+..-..+ .+....+ ....+ |++.|
T Consensus 121 ~L~al~~~g~r~v~l~vdEah~L~~~~le~Lrll~nl~~~~~~~l~ivL~Gqp~L~~~lr~~~l~e~~-~R~~ir~~l~P 199 (269)
T COG3267 121 ELAALVKKGKRPVVLMVDEAHDLNDSALEALRLLTNLEEDSSKLLSIVLIGQPKLRPRLRLPVLRELE-QRIDIRIELPP 199 (269)
T ss_pred HHHHHHHhCCCCeEEeehhHhhhChhHHHHHHHHHhhcccccCceeeeecCCcccchhhchHHHHhhh-heEEEEEecCC
Confidence 22 4667 99999998543 2344332 2111111111233322211 0111111 11134 99999
Q ss_pred CChhhhHHHHhhhhccCCCCChh-HHHHHHHHHHHcCCCchHHHHHhh
Q 002220 347 LRFHEALVLFSNFAFKENQCPGD-LLALLERVLKYANGNPLALRVLGS 393 (951)
Q Consensus 347 L~~~~a~~Lf~~~~~~~~~~~~~-~~~~~~~i~~~~~g~PLal~~~~~ 393 (951)
++.++...++..+..+...+.+- -.+....|.....|.|.++..++.
T Consensus 200 ~~~~~t~~yl~~~Le~a~~~~~l~~~~a~~~i~~~sqg~P~lin~~~~ 247 (269)
T COG3267 200 LTEAETGLYLRHRLEGAGLPEPLFSDDALLLIHEASQGIPRLINNLAT 247 (269)
T ss_pred cChHHHHHHHHHHHhccCCCcccCChhHHHHHHHHhccchHHHHHHHH
Confidence 99999999888776543222221 124566788899999999987764
No 219
>KOG0741 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=97.04 E-value=0.013 Score=63.97 Aligned_cols=132 Identities=20% Similarity=0.267 Sum_probs=77.5
Q ss_pred CCcEEEEEEecCCChhHHHHHHHHHHhhccccceeecccccchhcCCCChHHHHHHH-HHHHhcCccccCCCCChHHHHH
Q 002220 207 PDFRTIGIWGMGGIGKTTLAGAVFKLISREFEGKCFMPNVREESENGGGLVYLRDRV-VSEIFQEDIKIGTPYLPDYIVE 285 (951)
Q Consensus 207 ~~~~vv~I~G~gGiGKTtLA~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~l~~~i-l~~l~~~~~~~~~~~~~~~l~~ 285 (951)
.....+.+.|++|.|||+||..++. ...|+.+-.++ ..+ --++..-.+.. +. ....+
T Consensus 536 s~lvSvLl~Gp~~sGKTaLAA~iA~--~S~FPFvKiiS-pe~----miG~sEsaKc~~i~---------------k~F~D 593 (744)
T KOG0741|consen 536 SPLVSVLLEGPPGSGKTALAAKIAL--SSDFPFVKIIS-PED----MIGLSESAKCAHIK---------------KIFED 593 (744)
T ss_pred CcceEEEEecCCCCChHHHHHHHHh--hcCCCeEEEeC-hHH----ccCccHHHHHHHHH---------------HHHHH
Confidence 4567788999999999999999986 56788654442 000 11111111110 00 11222
Q ss_pred HhcCCcEEEEEeCCCChHH------------HHHHHhcc---CCCCCCCEEEEEeCCchhhhhcCCCc--cceEEcCCCC
Q 002220 286 RLNRMKVLTVLDDVNKVRQ------------LHYLACVL---DQFGPGSRIIITTRDKRILDDFGVCD--TDIYEVNKLR 348 (951)
Q Consensus 286 ~l~~~~~LlVlDdv~~~~~------------~~~l~~~~---~~~~~gs~IlvTtR~~~v~~~~~~~~--~~~~~l~~L~ 348 (951)
.-+..=-.||+||++..-+ ++.+.-.+ ++.+..--|+-||....++..|+... ...+.|+.++
T Consensus 594 AYkS~lsiivvDdiErLiD~vpIGPRfSN~vlQaL~VllK~~ppkg~kLli~~TTS~~~vL~~m~i~~~F~~~i~Vpnl~ 673 (744)
T KOG0741|consen 594 AYKSPLSIIVVDDIERLLDYVPIGPRFSNLVLQALLVLLKKQPPKGRKLLIFGTTSRREVLQEMGILDCFSSTIHVPNLT 673 (744)
T ss_pred hhcCcceEEEEcchhhhhcccccCchhhHHHHHHHHHHhccCCCCCceEEEEecccHHHHHHHcCHHHhhhheeecCccC
Confidence 3344556899999965433 33333333 32233334556777888888886421 1578999998
Q ss_pred h-hhhHHHHhhhh
Q 002220 349 F-HEALVLFSNFA 360 (951)
Q Consensus 349 ~-~~a~~Lf~~~~ 360 (951)
. ++..+.++..-
T Consensus 674 ~~~~~~~vl~~~n 686 (744)
T KOG0741|consen 674 TGEQLLEVLEELN 686 (744)
T ss_pred chHHHHHHHHHcc
Confidence 7 77777776543
No 220
>PRK11331 5-methylcytosine-specific restriction enzyme subunit McrB; Provisional
Probab=97.02 E-value=0.0017 Score=71.35 Aligned_cols=54 Identities=22% Similarity=0.241 Sum_probs=41.3
Q ss_pred CCcccchhhHHHHHHhhccCCCCcEEEEEEecCCChhHHHHHHHHHHhhc--cccceeec
Q 002220 186 DGFVGLNSRIQKIKSLLCIGLPDFRTIGIWGMGGIGKTTLAGAVFKLISR--EFEGKCFM 243 (951)
Q Consensus 186 ~~~vGr~~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~~~~~~~~--~f~~~~~~ 243 (951)
.++++.+..++.+...|.. .+.+.++|++|+|||++|+.+++.+.. .+..+.|+
T Consensus 175 ~d~~i~e~~le~l~~~L~~----~~~iil~GppGtGKT~lA~~la~~l~~~~~~~~v~~V 230 (459)
T PRK11331 175 NDLFIPETTIETILKRLTI----KKNIILQGPPGVGKTFVARRLAYLLTGEKAPQRVNMV 230 (459)
T ss_pred hcccCCHHHHHHHHHHHhc----CCCEEEECCCCCCHHHHHHHHHHHhcCCcccceeeEE
Confidence 4578888889999888853 357888999999999999999987643 34444444
No 221
>CHL00095 clpC Clp protease ATP binding subunit
Probab=97.00 E-value=0.004 Score=76.38 Aligned_cols=133 Identities=15% Similarity=0.159 Sum_probs=73.1
Q ss_pred CCCcccchhhHHHHHHhhccC------C-CCcEEEEEEecCCChhHHHHHHHHHHhhccccceeecccccchhcCCCChH
Q 002220 185 SDGFVGLNSRIQKIKSLLCIG------L-PDFRTIGIWGMGGIGKTTLAGAVFKLISREFEGKCFMPNVREESENGGGLV 257 (951)
Q Consensus 185 ~~~~vGr~~~~~~l~~~L~~~------~-~~~~vv~I~G~gGiGKTtLA~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~ 257 (951)
...++|-+..++.|...+... . ....++.++|+.|+|||+||+.+++.+-..-...+.+ +..+... ...+
T Consensus 508 ~~~v~GQ~~ai~~l~~~i~~~~~gl~~~~~p~~~~lf~Gp~GvGKt~lA~~LA~~l~~~~~~~~~~-d~s~~~~-~~~~- 584 (821)
T CHL00095 508 HKRIIGQDEAVVAVSKAIRRARVGLKNPNRPIASFLFSGPTGVGKTELTKALASYFFGSEDAMIRL-DMSEYME-KHTV- 584 (821)
T ss_pred cCcCcChHHHHHHHHHHHHHHhhcccCCCCCceEEEEECCCCCcHHHHHHHHHHHhcCCccceEEE-Echhccc-cccH-
Confidence 357899999999988877411 1 1234677999999999999999998653221222222 1111111 1111
Q ss_pred HHHHHHHHHHhcCccccCCCCChHHHHHHhcCCc-EEEEEeCCCCh--HHHHHHHhccCCC-----------CCCCEEEE
Q 002220 258 YLRDRVVSEIFQEDIKIGTPYLPDYIVERLNRMK-VLTVLDDVNKV--RQLHYLACVLDQF-----------GPGSRIII 323 (951)
Q Consensus 258 ~l~~~il~~l~~~~~~~~~~~~~~~l~~~l~~~~-~LlVlDdv~~~--~~~~~l~~~~~~~-----------~~gs~Ilv 323 (951)
..+.+...+.........+.+.++.++ -+++||+++.. +.++.+...+..+ ...+-||+
T Consensus 585 -------~~l~g~~~gyvg~~~~~~l~~~~~~~p~~VvllDeieka~~~v~~~Llq~le~g~~~d~~g~~v~~~~~i~I~ 657 (821)
T CHL00095 585 -------SKLIGSPPGYVGYNEGGQLTEAVRKKPYTVVLFDEIEKAHPDIFNLLLQILDDGRLTDSKGRTIDFKNTLIIM 657 (821)
T ss_pred -------HHhcCCCCcccCcCccchHHHHHHhCCCeEEEECChhhCCHHHHHHHHHHhccCceecCCCcEEecCceEEEE
Confidence 112222222111122245666666555 48889999744 3355555554332 13455666
Q ss_pred EeCC
Q 002220 324 TTRD 327 (951)
Q Consensus 324 TtR~ 327 (951)
||..
T Consensus 658 Tsn~ 661 (821)
T CHL00095 658 TSNL 661 (821)
T ss_pred eCCc
Confidence 6654
No 222
>PRK11889 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=96.98 E-value=0.027 Score=60.77 Aligned_cols=29 Identities=28% Similarity=0.377 Sum_probs=24.8
Q ss_pred CcEEEEEEecCCChhHHHHHHHHHHhhcc
Q 002220 208 DFRTIGIWGMGGIGKTTLAGAVFKLISRE 236 (951)
Q Consensus 208 ~~~vv~I~G~gGiGKTtLA~~~~~~~~~~ 236 (951)
+.++|+++|++|+||||++..++..+..+
T Consensus 240 ~~~vI~LVGptGvGKTTTiaKLA~~L~~~ 268 (436)
T PRK11889 240 EVQTIALIGPTGVGKTTTLAKMAWQFHGK 268 (436)
T ss_pred CCcEEEEECCCCCcHHHHHHHHHHHHHHc
Confidence 45899999999999999999999866543
No 223
>cd01131 PilT Pilus retraction ATPase PilT. PilT is a nucleotide binding protein responsible for the retraction of type IV pili, likely by pili disassembly. This retraction provides the force required for travel of bacteria in low water environments by a mechanism known as twitching motility.
Probab=96.97 E-value=0.0021 Score=64.13 Aligned_cols=110 Identities=13% Similarity=0.159 Sum_probs=63.0
Q ss_pred EEEEEEecCCChhHHHHHHHHHHhhccccceeec-ccccchhcCCCChHHHHHHHHHHHhcCccccCCCCChHHHHHHhc
Q 002220 210 RTIGIWGMGGIGKTTLAGAVFKLISREFEGKCFM-PNVREESENGGGLVYLRDRVVSEIFQEDIKIGTPYLPDYIVERLN 288 (951)
Q Consensus 210 ~vv~I~G~gGiGKTtLA~~~~~~~~~~f~~~~~~-~~~~~~~~~~~~~~~l~~~il~~l~~~~~~~~~~~~~~~l~~~l~ 288 (951)
.+|.|+|+.|.||||++..+...+.......++. .+..+... . .. ..+ +.............+.++..++
T Consensus 2 GlilI~GptGSGKTTll~~ll~~~~~~~~~~i~t~e~~~E~~~-~-~~----~~~---i~q~~vg~~~~~~~~~i~~aLr 72 (198)
T cd01131 2 GLVLVTGPTGSGKSTTLAAMIDYINKNKTHHILTIEDPIEFVH-E-SK----RSL---INQREVGLDTLSFENALKAALR 72 (198)
T ss_pred cEEEEECCCCCCHHHHHHHHHHHhhhcCCcEEEEEcCCccccc-c-Cc----cce---eeecccCCCccCHHHHHHHHhc
Confidence 4789999999999999999888665444433332 21111000 0 00 000 0011111111111267788888
Q ss_pred CCcEEEEEeCCCChHHHHHHHhccCCCCCCCEEEEEeCCchhh
Q 002220 289 RMKVLTVLDDVNKVRQLHYLACVLDQFGPGSRIIITTRDKRIL 331 (951)
Q Consensus 289 ~~~~LlVlDdv~~~~~~~~l~~~~~~~~~gs~IlvTtR~~~v~ 331 (951)
..+=.+++|.+.+.+.+....... ..|..++.|+-...+.
T Consensus 73 ~~pd~ii~gEird~e~~~~~l~~a---~~G~~v~~t~Ha~~~~ 112 (198)
T cd01131 73 QDPDVILVGEMRDLETIRLALTAA---ETGHLVMSTLHTNSAA 112 (198)
T ss_pred CCcCEEEEcCCCCHHHHHHHHHHH---HcCCEEEEEecCCcHH
Confidence 778899999998887765544332 3456677777665544
No 224
>PRK08118 topology modulation protein; Reviewed
Probab=96.93 E-value=0.0024 Score=61.69 Aligned_cols=33 Identities=27% Similarity=0.458 Sum_probs=26.0
Q ss_pred EEEEEEecCCChhHHHHHHHHHHhh---ccccceee
Q 002220 210 RTIGIWGMGGIGKTTLAGAVFKLIS---REFEGKCF 242 (951)
Q Consensus 210 ~vv~I~G~gGiGKTtLA~~~~~~~~---~~f~~~~~ 242 (951)
+.|.|+|++|+||||||+.+++... -+|+..+|
T Consensus 2 ~rI~I~G~~GsGKSTlak~L~~~l~~~~~~lD~l~~ 37 (167)
T PRK08118 2 KKIILIGSGGSGKSTLARQLGEKLNIPVHHLDALFW 37 (167)
T ss_pred cEEEEECCCCCCHHHHHHHHHHHhCCCceecchhhc
Confidence 3588999999999999999998754 33555554
No 225
>PRK06921 hypothetical protein; Provisional
Probab=96.92 E-value=0.0031 Score=65.87 Aligned_cols=37 Identities=27% Similarity=0.319 Sum_probs=29.2
Q ss_pred CcEEEEEEecCCChhHHHHHHHHHHhhcc-ccceeecc
Q 002220 208 DFRTIGIWGMGGIGKTTLAGAVFKLISRE-FEGKCFMP 244 (951)
Q Consensus 208 ~~~vv~I~G~gGiGKTtLA~~~~~~~~~~-f~~~~~~~ 244 (951)
....+.++|..|+|||+||.++++.+..+ ...++|+.
T Consensus 116 ~~~~l~l~G~~G~GKThLa~aia~~l~~~~g~~v~y~~ 153 (266)
T PRK06921 116 RKNSIALLGQPGSGKTHLLTAAANELMRKKGVPVLYFP 153 (266)
T ss_pred CCCeEEEECCCCCcHHHHHHHHHHHHhhhcCceEEEEE
Confidence 34678999999999999999999987654 44456654
No 226
>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=96.89 E-value=0.00034 Score=69.56 Aligned_cols=62 Identities=31% Similarity=0.529 Sum_probs=28.8
Q ss_pred CCCCCEEeccCCC--CC-CcCccCCCCCCCCEEEccCCCCcccc--hhhcCCCCCCEEeeCCCCCCC
Q 002220 843 LSSLERLQLSGCE--IK-EIPEDIDCLSSLEVLDLSGSKIEILP--TSIGQLSRLRQLNLLDCNMLQ 904 (951)
Q Consensus 843 l~~L~~L~L~~~~--l~-~l~~~l~~l~~L~~L~L~~n~l~~l~--~~l~~l~~L~~L~L~~~~~l~ 904 (951)
+++|+.|.++.|. +. .++.....+|+|++|++++|++..+. ..+..+.+|..|++.+|.-..
T Consensus 64 Lp~LkkL~lsdn~~~~~~~l~vl~e~~P~l~~l~ls~Nki~~lstl~pl~~l~nL~~Ldl~n~~~~~ 130 (260)
T KOG2739|consen 64 LPKLKKLELSDNYRRVSGGLEVLAEKAPNLKVLNLSGNKIKDLSTLRPLKELENLKSLDLFNCSVTN 130 (260)
T ss_pred cchhhhhcccCCcccccccceehhhhCCceeEEeecCCccccccccchhhhhcchhhhhcccCCccc
Confidence 4455555555552 22 13333333455555555555544221 234445555555555554443
No 227
>PRK14974 cell division protein FtsY; Provisional
Probab=96.85 E-value=0.0097 Score=63.91 Aligned_cols=29 Identities=24% Similarity=0.290 Sum_probs=25.0
Q ss_pred CcEEEEEEecCCChhHHHHHHHHHHhhcc
Q 002220 208 DFRTIGIWGMGGIGKTTLAGAVFKLISRE 236 (951)
Q Consensus 208 ~~~vv~I~G~gGiGKTtLA~~~~~~~~~~ 236 (951)
+..+|+++|++|+||||++.+++..++..
T Consensus 139 ~~~vi~~~G~~GvGKTTtiakLA~~l~~~ 167 (336)
T PRK14974 139 KPVVIVFVGVNGTGKTTTIAKLAYYLKKN 167 (336)
T ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHHHHc
Confidence 46899999999999999999998876554
No 228
>PRK11608 pspF phage shock protein operon transcriptional activator; Provisional
Probab=96.80 E-value=0.024 Score=61.51 Aligned_cols=47 Identities=19% Similarity=0.234 Sum_probs=37.9
Q ss_pred CCCcccchhhHHHHHHhhccCCCCcEEEEEEecCCChhHHHHHHHHH
Q 002220 185 SDGFVGLNSRIQKIKSLLCIGLPDFRTIGIWGMGGIGKTTLAGAVFK 231 (951)
Q Consensus 185 ~~~~vGr~~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~~~~ 231 (951)
.+.++|....+.++.+.+..-.....-|.|+|..|+||+++|+.+..
T Consensus 5 ~~~liG~S~~~~~~~~~i~~~a~~~~pVlI~GE~GtGK~~lA~~iH~ 51 (326)
T PRK11608 5 KDNLLGEANSFLEVLEQVSRLAPLDKPVLIIGERGTGKELIASRLHY 51 (326)
T ss_pred cCccEECCHHHHHHHHHHHHHhCCCCCEEEECCCCCcHHHHHHHHHH
Confidence 35689999999988887753333445688999999999999999875
No 229
>PRK06835 DNA replication protein DnaC; Validated
Probab=96.80 E-value=0.0054 Score=65.84 Aligned_cols=35 Identities=20% Similarity=0.277 Sum_probs=28.4
Q ss_pred EEEEEEecCCChhHHHHHHHHHHhhccccceeecc
Q 002220 210 RTIGIWGMGGIGKTTLAGAVFKLISREFEGKCFMP 244 (951)
Q Consensus 210 ~vv~I~G~gGiGKTtLA~~~~~~~~~~f~~~~~~~ 244 (951)
..+.++|.+|+|||+||.++++.+..+-..++|+.
T Consensus 184 ~~Lll~G~~GtGKThLa~aIa~~l~~~g~~V~y~t 218 (329)
T PRK06835 184 ENLLFYGNTGTGKTFLSNCIAKELLDRGKSVIYRT 218 (329)
T ss_pred CcEEEECCCCCcHHHHHHHHHHHHHHCCCeEEEEE
Confidence 67999999999999999999997655544556653
No 230
>PRK06964 DNA polymerase III subunit delta'; Validated
Probab=96.79 E-value=0.073 Score=57.43 Aligned_cols=92 Identities=20% Similarity=0.214 Sum_probs=59.5
Q ss_pred CCcEEEEEeCCCC--hHHHHHHHhccCCCCCCCEEEEEeCC-chhhhhcCCCccceEEcCCCChhhhHHHHhhhhccCCC
Q 002220 289 RMKVLTVLDDVNK--VRQLHYLACVLDQFGPGSRIIITTRD-KRILDDFGVCDTDIYEVNKLRFHEALVLFSNFAFKENQ 365 (951)
Q Consensus 289 ~~~~LlVlDdv~~--~~~~~~l~~~~~~~~~gs~IlvTtR~-~~v~~~~~~~~~~~~~l~~L~~~~a~~Lf~~~~~~~~~ 365 (951)
+++-++|+|+++. ......++..+....+++.+|++|.+ ..+...... ....+.+.+++.++..+.+.... .
T Consensus 131 ~~~kV~iI~~ae~m~~~AaNaLLKtLEEPp~~t~fiL~t~~~~~LLpTI~S-Rcq~i~~~~~~~~~~~~~L~~~~----~ 205 (342)
T PRK06964 131 GGARVVVLYPAEALNVAAANALLKTLEEPPPGTVFLLVSARIDRLLPTILS-RCRQFPMTVPAPEAAAAWLAAQG----V 205 (342)
T ss_pred CCceEEEEechhhcCHHHHHHHHHHhcCCCcCcEEEEEECChhhCcHHHHh-cCEEEEecCCCHHHHHHHHHHcC----C
Confidence 3455888999974 44577777777666677766666655 444433211 12789999999999999987652 1
Q ss_pred CChhHHHHHHHHHHHcCCCchHHHHH
Q 002220 366 CPGDLLALLERVLKYANGNPLALRVL 391 (951)
Q Consensus 366 ~~~~~~~~~~~i~~~~~g~PLal~~~ 391 (951)
. . ...++..++|.|+....+
T Consensus 206 -~-~----~~~~l~~~~Gsp~~Al~~ 225 (342)
T PRK06964 206 -A-D----ADALLAEAGGAPLAALAL 225 (342)
T ss_pred -C-h----HHHHHHHcCCCHHHHHHH
Confidence 1 1 123567789999754444
No 231
>COG2812 DnaX DNA polymerase III, gamma/tau subunits [DNA replication, recombination, and repair]
Probab=96.78 E-value=0.011 Score=66.55 Aligned_cols=185 Identities=19% Similarity=0.222 Sum_probs=103.3
Q ss_pred CCCCCcccchhhHHHHHHhhccCCCCcEEEEEEecCCChhHHHHHHHHHHhh----cccc--ceeecccccchhcC-CCC
Q 002220 183 TYSDGFVGLNSRIQKIKSLLCIGLPDFRTIGIWGMGGIGKTTLAGAVFKLIS----REFE--GKCFMPNVREESEN-GGG 255 (951)
Q Consensus 183 ~~~~~~vGr~~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~~~~~~~----~~f~--~~~~~~~~~~~~~~-~~~ 255 (951)
...+++||-+.-...|...+..+. -..--...|+-|+||||+|+-++..+- ...+ ..|..+ ...... ..+
T Consensus 13 ~~F~evvGQe~v~~~L~nal~~~r-i~hAYlfsG~RGvGKTt~Ari~AkalNC~~~~~~ePC~~C~~C--k~I~~g~~~D 89 (515)
T COG2812 13 KTFDDVVGQEHVVKTLSNALENGR-IAHAYLFSGPRGVGKTTIARILAKALNCENGPTAEPCGKCISC--KEINEGSLID 89 (515)
T ss_pred ccHHHhcccHHHHHHHHHHHHhCc-chhhhhhcCCCCcCchhHHHHHHHHhcCCCCCCCCcchhhhhh--HhhhcCCccc
Confidence 345678999999999999886432 234567899999999999999987431 1111 111111 000000 000
Q ss_pred hHHHHHHHHHHHhcCccccCCCCChHHHHHHh-----cCCcEEEEEeCCC--ChHHHHHHHhccCCCCCCCEEEEEeCCc
Q 002220 256 LVYLRDRVVSEIFQEDIKIGTPYLPDYIVERL-----NRMKVLTVLDDVN--KVRQLHYLACVLDQFGPGSRIIITTRDK 328 (951)
Q Consensus 256 ~~~l~~~il~~l~~~~~~~~~~~~~~~l~~~l-----~~~~~LlVlDdv~--~~~~~~~l~~~~~~~~~gs~IlvTtR~~ 328 (951)
+..+ +.++ ....+..+.|.+.. +++-=+.|+|.|. +...+..++..+....+....|..|.+.
T Consensus 90 viEi--DaAS--------n~gVddiR~i~e~v~y~P~~~ryKVyiIDEvHMLS~~afNALLKTLEEPP~hV~FIlATTe~ 159 (515)
T COG2812 90 VIEI--DAAS--------NTGVDDIREIIEKVNYAPSEGRYKVYIIDEVHMLSKQAFNALLKTLEEPPSHVKFILATTEP 159 (515)
T ss_pred chhh--hhhh--------ccChHHHHHHHHHhccCCccccceEEEEecHHhhhHHHHHHHhcccccCccCeEEEEecCCc
Confidence 0000 0000 00111112233322 2445588999996 5556888887776656666666666655
Q ss_pred -hhhhhcCCCccceEEcCCCChhhhHHHHhhhhccCCCCChhHHHHHHHHHHHcCC
Q 002220 329 -RILDDFGVCDTDIYEVNKLRFHEALVLFSNFAFKENQCPGDLLALLERVLKYANG 383 (951)
Q Consensus 329 -~v~~~~~~~~~~~~~l~~L~~~~a~~Lf~~~~~~~~~~~~~~~~~~~~i~~~~~g 383 (951)
.+.... ..+.+.|..+.++.++-...+...+-.+....+ .+...-|++..+|
T Consensus 160 ~Kip~TI-lSRcq~f~fkri~~~~I~~~L~~i~~~E~I~~e--~~aL~~ia~~a~G 212 (515)
T COG2812 160 QKIPNTI-LSRCQRFDFKRLDLEEIAKHLAAILDKEGINIE--EDALSLIARAAEG 212 (515)
T ss_pred CcCchhh-hhccccccccCCCHHHHHHHHHHHHHhcCCccC--HHHHHHHHHHcCC
Confidence 332211 112278999999999998888877744332222 2344555555555
No 232
>PRK11034 clpA ATP-dependent Clp protease ATP-binding subunit; Provisional
Probab=96.78 E-value=0.0053 Score=73.35 Aligned_cols=114 Identities=16% Similarity=0.174 Sum_probs=64.7
Q ss_pred CCcccchhhHHHHHHhhccC-------CCCcEEEEEEecCCChhHHHHHHHHHHhhccccceeecccccchhcCCCChHH
Q 002220 186 DGFVGLNSRIQKIKSLLCIG-------LPDFRTIGIWGMGGIGKTTLAGAVFKLISREFEGKCFMPNVREESENGGGLVY 258 (951)
Q Consensus 186 ~~~vGr~~~~~~l~~~L~~~-------~~~~~vv~I~G~gGiGKTtLA~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~ 258 (951)
..++|-+..++.|...+... ......+.++|++|+|||++|+.++......| +.+. ..+...
T Consensus 458 ~~ViGQ~~ai~~l~~~i~~~~~gl~~~~kp~~~~Lf~GP~GvGKT~lAk~LA~~l~~~~---i~id-~se~~~------- 526 (758)
T PRK11034 458 MLVFGQDKAIEALTEAIKMSRAGLGHEHKPVGSFLFAGPTGVGKTEVTVQLSKALGIEL---LRFD-MSEYME------- 526 (758)
T ss_pred ceEeCcHHHHHHHHHHHHHHhccccCCCCCcceEEEECCCCCCHHHHHHHHHHHhCCCc---EEee-chhhcc-------
Confidence 46899999999888877521 12245789999999999999999998763222 1221 111111
Q ss_pred HHHHHHHHHhcCccccCCCCChHHHHHHhcCC-cEEEEEeCCCChH--HHHHHHhcc
Q 002220 259 LRDRVVSEIFQEDIKIGTPYLPDYIVERLNRM-KVLTVLDDVNKVR--QLHYLACVL 312 (951)
Q Consensus 259 l~~~il~~l~~~~~~~~~~~~~~~l~~~l~~~-~~LlVlDdv~~~~--~~~~l~~~~ 312 (951)
......+.+.............+.+.++.+ .-+++||+++... .++.+...+
T Consensus 527 --~~~~~~LiG~~~gyvg~~~~g~L~~~v~~~p~sVlllDEieka~~~v~~~LLq~l 581 (758)
T PRK11034 527 --RHTVSRLIGAPPGYVGFDQGGLLTDAVIKHPHAVLLLDEIEKAHPDVFNLLLQVM 581 (758)
T ss_pred --cccHHHHcCCCCCcccccccchHHHHHHhCCCcEEEeccHhhhhHHHHHHHHHHH
Confidence 111233333222211111223455555444 4599999997553 345555443
No 233
>smart00763 AAA_PrkA PrkA AAA domain. This is a family of PrkA bacterial and archaeal serine kinases approximately 630 residues long. This is the N-terminal AAA domain.
Probab=96.74 E-value=0.002 Score=68.78 Aligned_cols=48 Identities=17% Similarity=0.265 Sum_probs=40.8
Q ss_pred CcccchhhHHHHHHhhccC----CCCcEEEEEEecCCChhHHHHHHHHHHhh
Q 002220 187 GFVGLNSRIQKIKSLLCIG----LPDFRTIGIWGMGGIGKTTLAGAVFKLIS 234 (951)
Q Consensus 187 ~~vGr~~~~~~l~~~L~~~----~~~~~vv~I~G~gGiGKTtLA~~~~~~~~ 234 (951)
+++|.++.++++.+++... +...++++++|++|.||||||+.+++.+.
T Consensus 52 ~~~G~~~~i~~lv~~l~~~a~g~~~~r~il~L~GPPGsGKStla~~La~~l~ 103 (361)
T smart00763 52 DFFGMEEAIERFVNYFKSAAQGLEERKQILYLLGPVGGGKSSLVECLKRGLE 103 (361)
T ss_pred hccCcHHHHHHHHHHHHHHHhcCCCCCcEEEEECCCCCCHHHHHHHHHHHHh
Confidence 7999999999999888632 23468999999999999999999998654
No 234
>PRK12608 transcription termination factor Rho; Provisional
Probab=96.72 E-value=0.004 Score=66.77 Aligned_cols=102 Identities=15% Similarity=0.100 Sum_probs=60.3
Q ss_pred HHHHhhccCCCCcEEEEEEecCCChhHHHHHHHHHHhhcccc-ceeecccccchhcCCCChHHHHHHHHHHHhcCccccC
Q 002220 197 KIKSLLCIGLPDFRTIGIWGMGGIGKTTLAGAVFKLISREFE-GKCFMPNVREESENGGGLVYLRDRVVSEIFQEDIKIG 275 (951)
Q Consensus 197 ~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~~~~~~~~~f~-~~~~~~~~~~~~~~~~~~~~l~~~il~~l~~~~~~~~ 275 (951)
++.+.+..-. .-..++|+|.+|+|||||++.+++.+..+.+ ..+++..+.+. ...+..+.+.+...+........
T Consensus 122 RvID~l~PiG-kGQR~LIvG~pGtGKTTLl~~la~~i~~~~~dv~~vv~lIgER---~~EV~df~~~i~~~Vvast~de~ 197 (380)
T PRK12608 122 RVVDLVAPIG-KGQRGLIVAPPRAGKTVLLQQIAAAVAANHPEVHLMVLLIDER---PEEVTDMRRSVKGEVYASTFDRP 197 (380)
T ss_pred hhhhheeecC-CCceEEEECCCCCCHHHHHHHHHHHHHhcCCCceEEEEEecCC---CCCHHHHHHHHhhhEEeecCCCC
Confidence 4566654322 2346699999999999999999998766543 32333333332 45667777777665544322221
Q ss_pred CCCC------hHHHHHHh--cCCcEEEEEeCCCCh
Q 002220 276 TPYL------PDYIVERL--NRMKVLTVLDDVNKV 302 (951)
Q Consensus 276 ~~~~------~~~l~~~l--~~~~~LlVlDdv~~~ 302 (951)
.... ...+.+++ ++++++||+|++...
T Consensus 198 ~~~~~~v~~~~~~~Ae~f~~~GkdVVLvlDsltr~ 232 (380)
T PRK12608 198 PDEHIRVAELVLERAKRLVEQGKDVVILLDSLTRL 232 (380)
T ss_pred HHHHHHHHHHHHHHHHHHHHcCCCEEEEEeCcHHH
Confidence 1111 11122222 578999999998544
No 235
>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=96.70 E-value=0.00073 Score=67.28 Aligned_cols=106 Identities=28% Similarity=0.351 Sum_probs=54.8
Q ss_pred CCCCcEEEcccCCCcccCccccCCCCCcEEeeccCCCCccCCcccCCcCCCCCCCCEEeccCCCCCCc--CccCCCCCCC
Q 002220 792 MELLETLDLERTGVKELPPSFENLQGLRQLSLIGCSELKCSGWVLPTRISKLSSLERLQLSGCEIKEI--PEDIDCLSSL 869 (951)
Q Consensus 792 l~~L~~L~l~~n~i~~l~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~l~~l--~~~l~~l~~L 869 (951)
+..|+.|.+.+..++++ ..+..+++|+.|.++.|......+ ++.....+|+|++|++++|++..+ -..+..+.+|
T Consensus 42 ~~~le~ls~~n~gltt~-~~~P~Lp~LkkL~lsdn~~~~~~~--l~vl~e~~P~l~~l~ls~Nki~~lstl~pl~~l~nL 118 (260)
T KOG2739|consen 42 FVELELLSVINVGLTTL-TNFPKLPKLKKLELSDNYRRVSGG--LEVLAEKAPNLKVLNLSGNKIKDLSTLRPLKELENL 118 (260)
T ss_pred ccchhhhhhhccceeec-ccCCCcchhhhhcccCCccccccc--ceehhhhCCceeEEeecCCccccccccchhhhhcch
Confidence 33444444444444433 234456666666666663322222 333344556777777777766642 1123445666
Q ss_pred CEEEccCCCCcccc----hhhcCCCCCCEEeeCCC
Q 002220 870 EVLDLSGSKIEILP----TSIGQLSRLRQLNLLDC 900 (951)
Q Consensus 870 ~~L~L~~n~l~~l~----~~l~~l~~L~~L~L~~~ 900 (951)
.+|++.+|..+.+- ..+.-+++|+.|+-.+.
T Consensus 119 ~~Ldl~n~~~~~l~dyre~vf~ll~~L~~LD~~dv 153 (260)
T KOG2739|consen 119 KSLDLFNCSVTNLDDYREKVFLLLPSLKYLDGCDV 153 (260)
T ss_pred hhhhcccCCccccccHHHHHHHHhhhhcccccccc
Confidence 67777777555332 22344666666655443
No 236
>TIGR01817 nifA Nif-specific regulatory protein. This model represents NifA, a DNA-binding regulatory protein for nitrogen fixation. The model produces scores between the trusted and noise cutoffs for a well-described NifA homolog in Aquifex aeolicus (which lacks nitrogenase), for transcriptional activators of alternative nitrogenases (VFe or FeFe instead of MoFe), and truncated forms.
Probab=96.70 E-value=0.038 Score=64.68 Aligned_cols=49 Identities=22% Similarity=0.336 Sum_probs=39.8
Q ss_pred CCCCcccchhhHHHHHHhhccCCCCcEEEEEEecCCChhHHHHHHHHHH
Q 002220 184 YSDGFVGLNSRIQKIKSLLCIGLPDFRTIGIWGMGGIGKTTLAGAVFKL 232 (951)
Q Consensus 184 ~~~~~vGr~~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~~~~~ 232 (951)
....++|.+..+.++.+.+..-......|.|+|..|+|||++|+.+.+.
T Consensus 194 ~~~~liG~s~~~~~~~~~~~~~a~~~~pvli~Ge~GtGK~~lA~~ih~~ 242 (534)
T TIGR01817 194 KEDGIIGKSPAMRQVVDQARVVARSNSTVLLRGESGTGKELIAKAIHYL 242 (534)
T ss_pred ccCceEECCHHHHHHHHHHHHHhCcCCCEEEECCCCccHHHHHHHHHHh
Confidence 4568999999999988877533334456789999999999999999874
No 237
>PF13177 DNA_pol3_delta2: DNA polymerase III, delta subunit; PDB: 1NJF_B 3GLG_G 1XXH_I 1NJG_A 3GLF_B 3GLI_G 1IQP_E 2GNO_A 1SXJ_E 1A5T_A ....
Probab=96.70 E-value=0.023 Score=54.52 Aligned_cols=139 Identities=17% Similarity=0.190 Sum_probs=71.1
Q ss_pred cchhhHHHHHHhhccCCCCcEEEEEEecCCChhHHHHHHHHHHhhc--------------------cccceeecccccch
Q 002220 190 GLNSRIQKIKSLLCIGLPDFRTIGIWGMGGIGKTTLAGAVFKLISR--------------------EFEGKCFMPNVREE 249 (951)
Q Consensus 190 Gr~~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~~~~~~~~--------------------~f~~~~~~~~~~~~ 249 (951)
|-+...+.|.+.+..+ .-...+.++|..|+||+++|..+++.+-. .+....|+.....
T Consensus 1 gq~~~~~~L~~~~~~~-~l~ha~L~~G~~g~gk~~~a~~~a~~ll~~~~~~~~c~~c~~c~~~~~~~~~d~~~~~~~~~- 78 (162)
T PF13177_consen 1 GQEEIIELLKNLIKSG-RLPHALLFHGPSGSGKKTLALAFARALLCSNPNEDPCGECRSCRRIEEGNHPDFIIIKPDKK- 78 (162)
T ss_dssp S-HHHHHHHHHHHHCT-C--SEEEEECSTTSSHHHHHHHHHHHHC-TT-CTT--SSSHHHHHHHTT-CTTEEEEETTTS-
T ss_pred CcHHHHHHHHHHHHcC-CcceeEEEECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCHHHHHHHhccCcceEEEecccc-
Confidence 4556667777777432 33567899999999999999999985421 1222223210000
Q ss_pred hcCCCChHHHHHHHHHHHhcCccccCCCCChHHHHHHhcCCcEEEEEeCCCCh--HHHHHHHhccCCCCCCCEEEEEeCC
Q 002220 250 SENGGGLVYLRDRVVSEIFQEDIKIGTPYLPDYIVERLNRMKVLTVLDDVNKV--RQLHYLACVLDQFGPGSRIIITTRD 327 (951)
Q Consensus 250 ~~~~~~~~~l~~~il~~l~~~~~~~~~~~~~~~l~~~l~~~~~LlVlDdv~~~--~~~~~l~~~~~~~~~gs~IlvTtR~ 327 (951)
.. ...+..+. .+...+.... ..++.=++|+|+++.. +...+++..+.....++++|++|++
T Consensus 79 ~~-~i~i~~ir-~i~~~~~~~~---------------~~~~~KviiI~~ad~l~~~a~NaLLK~LEepp~~~~fiL~t~~ 141 (162)
T PF13177_consen 79 KK-SIKIDQIR-EIIEFLSLSP---------------SEGKYKVIIIDEADKLTEEAQNALLKTLEEPPENTYFILITNN 141 (162)
T ss_dssp SS-SBSHHHHH-HHHHHCTSS----------------TTSSSEEEEEETGGGS-HHHHHHHHHHHHSTTTTEEEEEEES-
T ss_pred cc-hhhHHHHH-HHHHHHHHHH---------------hcCCceEEEeehHhhhhHHHHHHHHHHhcCCCCCEEEEEEECC
Confidence 00 01111111 2222111100 1234668899999754 4467777766666778899888887
Q ss_pred ch-hhhhcCCCccceEEcCCCC
Q 002220 328 KR-ILDDFGVCDTDIYEVNKLR 348 (951)
Q Consensus 328 ~~-v~~~~~~~~~~~~~l~~L~ 348 (951)
.. +...... ....+.+.+++
T Consensus 142 ~~~il~TI~S-Rc~~i~~~~ls 162 (162)
T PF13177_consen 142 PSKILPTIRS-RCQVIRFRPLS 162 (162)
T ss_dssp GGGS-HHHHT-TSEEEEE----
T ss_pred hHHChHHHHh-hceEEecCCCC
Confidence 64 3222110 11556666553
No 238
>PF07728 AAA_5: AAA domain (dynein-related subfamily); InterPro: IPR011704 The ATPases Associated to a variety of cellular Activities (AAA) are a family distinguished by a highly conserved module of 230 amino acids []. The highly conserved nature of this module across taxa suggests that it has a key cellular role. Members of the family are involved in diverse cellular functions including gene expression, peroxisome assembly and vesicle mediated transport. Although the role of this ATPase AAA domain is not, as yet, clear, the AAA+ superfamily of proteins to which the AAA ATPases belong has a chaperone-like function in the assembly, operation or disassembly of proteins []. This ATPase domain includes some proteins not detected by the IPR003959 from INTERPRO model.; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NBX_X 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 3VKH_A 3VKG_A.
Probab=96.70 E-value=0.0018 Score=60.72 Aligned_cols=24 Identities=42% Similarity=0.538 Sum_probs=21.4
Q ss_pred EEEEecCCChhHHHHHHHHHHhhc
Q 002220 212 IGIWGMGGIGKTTLAGAVFKLISR 235 (951)
Q Consensus 212 v~I~G~gGiGKTtLA~~~~~~~~~ 235 (951)
|.|+|.+|+|||+||+.+++....
T Consensus 2 vlL~G~~G~GKt~l~~~la~~~~~ 25 (139)
T PF07728_consen 2 VLLVGPPGTGKTTLARELAALLGR 25 (139)
T ss_dssp EEEEESSSSSHHHHHHHHHHHHTC
T ss_pred EEEECCCCCCHHHHHHHHHHHhhc
Confidence 679999999999999999997733
No 239
>PF13207 AAA_17: AAA domain; PDB: 3AKC_A 3AKE_A 3AKD_A 2QL6_G 2QT1_A 2QSZ_A 2QSY_A 2QT0_A 2QG6_A 2P0E_A ....
Probab=96.68 E-value=0.0015 Score=59.54 Aligned_cols=23 Identities=39% Similarity=0.407 Sum_probs=21.4
Q ss_pred EEEEEecCCChhHHHHHHHHHHh
Q 002220 211 TIGIWGMGGIGKTTLAGAVFKLI 233 (951)
Q Consensus 211 vv~I~G~gGiGKTtLA~~~~~~~ 233 (951)
+|+|.|++|+||||+|+.+++++
T Consensus 1 vI~I~G~~gsGKST~a~~La~~~ 23 (121)
T PF13207_consen 1 VIIISGPPGSGKSTLAKELAERL 23 (121)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHH
T ss_pred CEEEECCCCCCHHHHHHHHHHHH
Confidence 68999999999999999999865
No 240
>PF04665 Pox_A32: Poxvirus A32 protein; InterPro: IPR006758 This entry contains uncharacterised proteins belonging to the B354L family which include the pox virus A32 protein. This is thought to be an ATPase involved in viral DNA packaging [].
Probab=96.68 E-value=0.0013 Score=66.44 Aligned_cols=35 Identities=26% Similarity=0.406 Sum_probs=30.0
Q ss_pred EEEEEEecCCChhHHHHHHHHHHhhccccceeecc
Q 002220 210 RTIGIWGMGGIGKTTLAGAVFKLISREFEGKCFMP 244 (951)
Q Consensus 210 ~vv~I~G~gGiGKTtLA~~~~~~~~~~f~~~~~~~ 244 (951)
-.++|.|..|.|||||+..+.......|..++++.
T Consensus 14 fr~viIG~sGSGKT~li~~lL~~~~~~f~~I~l~t 48 (241)
T PF04665_consen 14 FRMVIIGKSGSGKTTLIKSLLYYLRHKFDHIFLIT 48 (241)
T ss_pred ceEEEECCCCCCHHHHHHHHHHhhcccCCEEEEEe
Confidence 46789999999999999999998889997666553
No 241
>PF10443 RNA12: RNA12 protein; InterPro: IPR018850 Mitochondrial escape protein 2 (also known as RNA12) plays a role in maintaining the mitochondrial genome and in controlling mtDNA escape [, ]. It is also involved in the regulation of mtDNA nucleotide structure and number []. Additionally, this protein have a dispensable role in the early maturation of pre-rRNA [].
Probab=96.65 E-value=0.45 Score=51.93 Aligned_cols=107 Identities=15% Similarity=0.051 Sum_probs=67.6
Q ss_pred CcEEEEEeCCCChH--------HHHHHHhccCCCCCCCEEEEEeCCchhhh----hcCCCccceEEcCCCChhhhHHHHh
Q 002220 290 MKVLTVLDDVNKVR--------QLHYLACVLDQFGPGSRIIITTRDKRILD----DFGVCDTDIYEVNKLRFHEALVLFS 357 (951)
Q Consensus 290 ~~~LlVlDdv~~~~--------~~~~l~~~~~~~~~gs~IlvTtR~~~v~~----~~~~~~~~~~~l~~L~~~~a~~Lf~ 357 (951)
++=+||+|+..... .+..++..+-. .+-.+||++|-+....+ .+.....+.+.+...+++.|.++..
T Consensus 148 ~~PVVVIdnF~~k~~~~~~iy~~laeWAa~Lv~-~nIAHVIFlT~dv~~~k~LskaLPn~vf~tI~L~Das~~~Ak~yV~ 226 (431)
T PF10443_consen 148 RRPVVVIDNFLHKAEENDFIYDKLAEWAASLVQ-NNIAHVIFLTDDVSYSKPLSKALPNRVFKTISLSDASPESAKQYVL 226 (431)
T ss_pred cCCEEEEcchhccCcccchHHHHHHHHHHHHHh-cCccEEEEECCCCchhhhHHHhCCCCceeEEeecCCCHHHHHHHHH
Confidence 46789999983221 12222222222 35568999888765433 3333334778999999999999999
Q ss_pred hhhccCCCC-------------C-----hhHHHHHHHHHHHcCCCchHHHHHhhhcCC
Q 002220 358 NFAFKENQC-------------P-----GDLLALLERVLKYANGNPLALRVLGSFFHR 397 (951)
Q Consensus 358 ~~~~~~~~~-------------~-----~~~~~~~~~i~~~~~g~PLal~~~~~~L~~ 397 (951)
.+.-..... . .....-....++.+||=-.-|..+++.++.
T Consensus 227 ~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~eld~~i~~LGGRltDLe~lvrRiks 284 (431)
T PF10443_consen 227 SQLDEDTEDSSDSKESNEQNKNDKSAENEKDLAELDECIEPLGGRLTDLEFLVRRIKS 284 (431)
T ss_pred HHhcccccccccccccccccccccccccccchHHHHHHHHHcCCcHHHHHHHHHHHHc
Confidence 887432110 0 123344566788888888888888887764
No 242
>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]
Probab=96.64 E-value=0.00032 Score=81.61 Aligned_cols=34 Identities=29% Similarity=0.402 Sum_probs=18.8
Q ss_pred ccccceeccCCCCCCCc---CCCCCCCCCCcEEecCC
Q 002220 630 AFKLKFIDLHDSHNLTS---IPEPLEAPNLERINLCN 663 (951)
Q Consensus 630 l~~L~~L~L~~~~~~~~---~~~~~~l~~L~~L~L~~ 663 (951)
.+.|+.|.+..+..+.. .+....+++|+.|++++
T Consensus 187 ~~~L~~l~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~ 223 (482)
T KOG1947|consen 187 CPLLKRLSLSGCSKITDDSLDALALKCPNLEELDLSG 223 (482)
T ss_pred CchhhHhhhcccccCChhhHHHHHhhCchhheecccC
Confidence 55666666666654443 12233566666666665
No 243
>TIGR00959 ffh signal recognition particle protein. This model represents Ffh (Fifty-Four Homolog), the protein component that forms the bacterial (and organellar) signal recognition particle together with a 4.5S RNA. Ffh is a GTPase homologous to eukaryotic SRP54 and also to the GTPase FtsY (TIGR00064) that is the receptor for the signal recognition particle.
Probab=96.62 E-value=0.075 Score=59.19 Aligned_cols=27 Identities=30% Similarity=0.353 Sum_probs=23.8
Q ss_pred CcEEEEEEecCCChhHHHHHHHHHHhh
Q 002220 208 DFRTIGIWGMGGIGKTTLAGAVFKLIS 234 (951)
Q Consensus 208 ~~~vv~I~G~gGiGKTtLA~~~~~~~~ 234 (951)
.+.++.++|.+|+||||.|..++..+.
T Consensus 98 ~p~vi~~vG~~GsGKTTtaakLA~~l~ 124 (428)
T TIGR00959 98 PPTVILMVGLQGSGKTTTCGKLAYYLK 124 (428)
T ss_pred CCEEEEEECCCCCcHHHHHHHHHHHHH
Confidence 367999999999999999999988754
No 244
>PRK08939 primosomal protein DnaI; Reviewed
Probab=96.62 E-value=0.01 Score=63.24 Aligned_cols=36 Identities=17% Similarity=0.329 Sum_probs=27.7
Q ss_pred CcEEEEEEecCCChhHHHHHHHHHHhhccccceeec
Q 002220 208 DFRTIGIWGMGGIGKTTLAGAVFKLISREFEGKCFM 243 (951)
Q Consensus 208 ~~~vv~I~G~gGiGKTtLA~~~~~~~~~~f~~~~~~ 243 (951)
..+-+.|+|..|+|||.||.++++.+..+-..+.|+
T Consensus 155 ~~~gl~L~G~~G~GKThLa~Aia~~l~~~g~~v~~~ 190 (306)
T PRK08939 155 KVKGLYLYGDFGVGKSYLLAAIANELAKKGVSSTLL 190 (306)
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHHHHHcCCCEEEE
Confidence 346789999999999999999999775443334444
No 245
>PHA00729 NTP-binding motif containing protein
Probab=96.61 E-value=0.0051 Score=61.35 Aligned_cols=27 Identities=37% Similarity=0.391 Sum_probs=23.3
Q ss_pred CcEEEEEEecCCChhHHHHHHHHHHhh
Q 002220 208 DFRTIGIWGMGGIGKTTLAGAVFKLIS 234 (951)
Q Consensus 208 ~~~vv~I~G~gGiGKTtLA~~~~~~~~ 234 (951)
+...|.|+|.+|+||||||..+++++.
T Consensus 16 ~f~nIlItG~pGvGKT~LA~aLa~~l~ 42 (226)
T PHA00729 16 GFVSAVIFGKQGSGKTTYALKVARDVF 42 (226)
T ss_pred CeEEEEEECCCCCCHHHHHHHHHHHHH
Confidence 345789999999999999999998753
No 246
>PRK07261 topology modulation protein; Provisional
Probab=96.61 E-value=0.0078 Score=58.45 Aligned_cols=23 Identities=39% Similarity=0.510 Sum_probs=20.6
Q ss_pred EEEEEecCCChhHHHHHHHHHHh
Q 002220 211 TIGIWGMGGIGKTTLAGAVFKLI 233 (951)
Q Consensus 211 vv~I~G~gGiGKTtLA~~~~~~~ 233 (951)
.|.|+|++|+||||||+++....
T Consensus 2 ri~i~G~~GsGKSTla~~l~~~~ 24 (171)
T PRK07261 2 KIAIIGYSGSGKSTLARKLSQHY 24 (171)
T ss_pred EEEEEcCCCCCHHHHHHHHHHHh
Confidence 48899999999999999998754
No 247
>KOG0730 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=96.60 E-value=0.019 Score=64.74 Aligned_cols=168 Identities=20% Similarity=0.190 Sum_probs=90.3
Q ss_pred CCcccchhhHHHHHHhhc-----------cCCCCcEEEEEEecCCChhHHHHHHHHHHhhccccce----eecccccchh
Q 002220 186 DGFVGLNSRIQKIKSLLC-----------IGLPDFRTIGIWGMGGIGKTTLAGAVFKLISREFEGK----CFMPNVREES 250 (951)
Q Consensus 186 ~~~vGr~~~~~~l~~~L~-----------~~~~~~~vv~I~G~gGiGKTtLA~~~~~~~~~~f~~~----~~~~~~~~~~ 250 (951)
+++=|.|+...+|.+... -+-...+-|.++|+||+|||++|+++++.-+-.|-.+ .|-..+++
T Consensus 434 ~dIGGlE~lK~elq~~V~~p~~~pe~F~r~Gi~ppkGVLlyGPPGC~KT~lAkalAne~~~nFlsvkgpEL~sk~vGe-- 511 (693)
T KOG0730|consen 434 DDIGGLEELKRELQQAVEWPLKHPEKFARFGISPPKGVLLYGPPGCGKTLLAKALANEAGMNFLSVKGPELFSKYVGE-- 511 (693)
T ss_pred hhccCHHHHHHHHHHHHhhhhhchHHHHHhcCCCCceEEEECCCCcchHHHHHHHhhhhcCCeeeccCHHHHHHhcCc--
Confidence 344457776667765443 1224578899999999999999999999877777543 22111111
Q ss_pred cCCCChHHHHHHHHHHHhcCccccCCCCChHHHHHHhcCCcEEEEEeCCCChH-------------HHHHHHhccCCCCC
Q 002220 251 ENGGGLVYLRDRVVSEIFQEDIKIGTPYLPDYIVERLNRMKVLTVLDDVNKVR-------------QLHYLACVLDQFGP 317 (951)
Q Consensus 251 ~~~~~~~~l~~~il~~l~~~~~~~~~~~~~~~l~~~l~~~~~LlVlDdv~~~~-------------~~~~l~~~~~~~~~ 317 (951)
-.+..+.++.+.. +--+.++.||.++... -+..++..+.....
T Consensus 512 -----SEr~ir~iF~kAR-------------------~~aP~IiFfDEiDsi~~~R~g~~~~v~~RVlsqLLtEmDG~e~ 567 (693)
T KOG0730|consen 512 -----SERAIREVFRKAR-------------------QVAPCIIFFDEIDALAGSRGGSSSGVTDRVLSQLLTEMDGLEA 567 (693)
T ss_pred -----hHHHHHHHHHHHh-------------------hcCCeEEehhhHHhHhhccCCCccchHHHHHHHHHHHcccccc
Confidence 1122222222211 2235677777764221 13334444433332
Q ss_pred C--CEEEEEe-CCchhhhh-c---CCCccceEEcCCCChhhhHHHHhhhhccCCCCChhHHHHHHHHHHHcCCC
Q 002220 318 G--SRIIITT-RDKRILDD-F---GVCDTDIYEVNKLRFHEALVLFSNFAFKENQCPGDLLALLERVLKYANGN 384 (951)
Q Consensus 318 g--s~IlvTt-R~~~v~~~-~---~~~~~~~~~l~~L~~~~a~~Lf~~~~~~~~~~~~~~~~~~~~i~~~~~g~ 384 (951)
. .-||-.| |...+-.. + ..+ +.+.++.-+.+.-.++|..++-+....+. --.+++++++.|.
T Consensus 568 ~k~V~ViAATNRpd~ID~ALlRPGRlD--~iiyVplPD~~aR~~Ilk~~~kkmp~~~~---vdl~~La~~T~g~ 636 (693)
T KOG0730|consen 568 LKNVLVIAATNRPDMIDPALLRPGRLD--RIIYVPLPDLEARLEILKQCAKKMPFSED---VDLEELAQATEGY 636 (693)
T ss_pred cCcEEEEeccCChhhcCHHHcCCcccc--eeEeecCccHHHHHHHHHHHHhcCCCCcc---ccHHHHHHHhccC
Confidence 2 2233333 33322111 1 244 77888888888889999998854333222 1123445555554
No 248
>PRK05022 anaerobic nitric oxide reductase transcription regulator; Provisional
Probab=96.60 E-value=0.033 Score=64.54 Aligned_cols=50 Identities=20% Similarity=0.266 Sum_probs=41.2
Q ss_pred CCCCcccchhhHHHHHHhhccCCCCcEEEEEEecCCChhHHHHHHHHHHh
Q 002220 184 YSDGFVGLNSRIQKIKSLLCIGLPDFRTIGIWGMGGIGKTTLAGAVFKLI 233 (951)
Q Consensus 184 ~~~~~vGr~~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~~~~~~ 233 (951)
....++|....+.++.+.+..-......|.|+|..|+|||++|+.+.+.-
T Consensus 185 ~~~~iig~s~~~~~~~~~i~~~a~~~~pVlI~Ge~GtGK~~~A~~ih~~s 234 (509)
T PRK05022 185 KEGEMIGQSPAMQQLKKEIEVVAASDLNVLILGETGVGKELVARAIHAAS 234 (509)
T ss_pred cCCceeecCHHHHHHHHHHHHHhCCCCcEEEECCCCccHHHHHHHHHHhC
Confidence 35679999999999888876444455678999999999999999998743
No 249
>PF00158 Sigma54_activat: Sigma-54 interaction domain; InterPro: IPR002078 Some bacterial regulatory proteins activate the expression of genes from promoters recognised by core RNA polymerase associated with the alternative sigma-54 factor. These have a conserved domain of about 230 residues involved in the ATP-dependent [, ] interaction with sigma-54. About half of the proteins in which this domain is found (algB, dcdT, flbD, hoxA, hupR1, hydG, ntrC, pgtA and pilR) belong to signal transduction two-component systems [] and possess a domain that can be phosphorylated by a sensor-kinase protein in their N-terminal section. Almost all of these proteins possess a helix-turn-helix DNA-binding domain in their C-terminal section. The domain which interacts with the sigma-54 factor has an ATPase activity. This may be required to promote a conformational change necessary for the interaction []. The domain contains an atypical ATP-binding motif A (P-loop) as well as a form of motif B. The two ATP-binding motifs are located in the N-terminal section of the domain.; GO: 0005524 ATP binding, 0008134 transcription factor binding, 0006355 regulation of transcription, DNA-dependent, 0005622 intracellular; PDB: 1NY6_K 3M0E_G 1NY5_A 1OJL_A 3DZD_B 2C9C_A 2C98_A 2C96_A 2BJV_A 2C99_A ....
Probab=96.58 E-value=0.0053 Score=59.13 Aligned_cols=44 Identities=20% Similarity=0.277 Sum_probs=32.1
Q ss_pred cccchhhHHHHHHhhccCCCCcEEEEEEecCCChhHHHHHHHHH
Q 002220 188 FVGLNSRIQKIKSLLCIGLPDFRTIGIWGMGGIGKTTLAGAVFK 231 (951)
Q Consensus 188 ~vGr~~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~~~~ 231 (951)
+||.+..+.++.+.+..-.....-|.|+|..|+||+.+|+.+.+
T Consensus 1 liG~s~~m~~~~~~~~~~a~~~~pVlI~GE~GtGK~~lA~~IH~ 44 (168)
T PF00158_consen 1 LIGESPAMKRLREQAKRAASSDLPVLITGETGTGKELLARAIHN 44 (168)
T ss_dssp SS--SHHHHHHHHHHHHHTTSTS-EEEECSTTSSHHHHHHHHHH
T ss_pred CEeCCHHHHHHHHHHHHHhCCCCCEEEEcCCCCcHHHHHHHHHH
Confidence 47888888888777653333335677999999999999999988
No 250
>TIGR00064 ftsY signal recognition particle-docking protein FtsY. There is a weak division between FtsY and SRP54; both are GTPases. In E.coli, ftsY is an essential gene located in an operon with cell division genes ftsE and ftsX, but its apparent function is as the signal recognition particle docking protein.
Probab=96.58 E-value=0.0092 Score=62.52 Aligned_cols=37 Identities=19% Similarity=0.229 Sum_probs=28.6
Q ss_pred CCcEEEEEEecCCChhHHHHHHHHHHhhccccceeec
Q 002220 207 PDFRTIGIWGMGGIGKTTLAGAVFKLISREFEGKCFM 243 (951)
Q Consensus 207 ~~~~vv~I~G~gGiGKTtLA~~~~~~~~~~f~~~~~~ 243 (951)
.+.++++++|++|+||||++.+++..++..-..+.++
T Consensus 70 ~~~~vi~l~G~~G~GKTTt~akLA~~l~~~g~~V~li 106 (272)
T TIGR00064 70 NKPNVILFVGVNGVGKTTTIAKLANKLKKQGKSVLLA 106 (272)
T ss_pred CCCeEEEEECCCCCcHHHHHHHHHHHHHhcCCEEEEE
Confidence 3468999999999999999999998776553334444
No 251
>TIGR02902 spore_lonB ATP-dependent protease LonB. Members of this protein are LonB, a paralog of the ATP-dependent protease La (LonA, TIGR00763). LonB proteins are found strictly, and almost universally, in endospore-forming bacteria. This protease was shown, in Bacillus subtilis, to be expressed specifically in the forespore, during sporulation, under control of sigma(F). The lonB gene, despite location immediately upstream of lonA, was shown to be monocistronic. LonB appears able to act on sigma(H) for post-translation control, but lonB mutation did not produce an obvious sporulation defect under the conditions tested. Note that additional paralogs of LonA and LonB occur in the Clostridium lineage and this model selects only one per species as the protein that corresponds to LonB in B. subtilis.
Probab=96.56 E-value=0.019 Score=66.47 Aligned_cols=48 Identities=29% Similarity=0.440 Sum_probs=38.0
Q ss_pred CCCCCcccchhhHHHHHHhhccCCCCcEEEEEEecCCChhHHHHHHHHHH
Q 002220 183 TYSDGFVGLNSRIQKIKSLLCIGLPDFRTIGIWGMGGIGKTTLAGAVFKL 232 (951)
Q Consensus 183 ~~~~~~vGr~~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~~~~~ 232 (951)
...++++|.+..++.+...+... ...-+.|+|.+|+|||++|+.+++.
T Consensus 62 ~~f~~iiGqs~~i~~l~~al~~~--~~~~vLi~Ge~GtGKt~lAr~i~~~ 109 (531)
T TIGR02902 62 KSFDEIIGQEEGIKALKAALCGP--NPQHVIIYGPPGVGKTAAARLVLEE 109 (531)
T ss_pred CCHHHeeCcHHHHHHHHHHHhCC--CCceEEEECCCCCCHHHHHHHHHHH
Confidence 33457999999999998876432 3345689999999999999999864
No 252
>PF02562 PhoH: PhoH-like protein; InterPro: IPR003714 PhoH is a cytoplasmic protein and predicted ATPase that is induced by phosphate starvation and belongings to the phosphate regulon (pho) in Escherichia coli [].; GO: 0005524 ATP binding; PDB: 3B85_A.
Probab=96.56 E-value=0.006 Score=60.19 Aligned_cols=50 Identities=22% Similarity=0.136 Sum_probs=31.5
Q ss_pred chhhHHHHHHhhccCCCCcEEEEEEecCCChhHHHHHHHHHH-h-hccccceeecc
Q 002220 191 LNSRIQKIKSLLCIGLPDFRTIGIWGMGGIGKTTLAGAVFKL-I-SREFEGKCFMP 244 (951)
Q Consensus 191 r~~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~~~~~-~-~~~f~~~~~~~ 244 (951)
+..+-....+.|. ...++.+.|++|.|||.||.+.+-+ + ...|+..++..
T Consensus 5 ~~~~Q~~~~~al~----~~~~v~~~G~AGTGKT~LA~a~Al~~v~~g~~~kiii~R 56 (205)
T PF02562_consen 5 KNEEQKFALDALL----NNDLVIVNGPAGTGKTFLALAAALELVKEGEYDKIIITR 56 (205)
T ss_dssp -SHHHHHHHHHHH----H-SEEEEE--TTSSTTHHHHHHHHHHHHTTS-SEEEEEE
T ss_pred CCHHHHHHHHHHH----hCCeEEEECCCCCcHHHHHHHHHHHHHHhCCCcEEEEEe
Confidence 3344444555553 3468999999999999999998853 2 46677777664
No 253
>PRK08699 DNA polymerase III subunit delta'; Validated
Probab=96.54 E-value=0.026 Score=60.80 Aligned_cols=86 Identities=14% Similarity=0.194 Sum_probs=49.0
Q ss_pred cEEEEEeCCCCh--HHHHHHHhccCCCCCCCEEEEEeCCch-hhhhcCCCccceEEcCCCChhhhHHHHhhhhccCCCCC
Q 002220 291 KVLTVLDDVNKV--RQLHYLACVLDQFGPGSRIIITTRDKR-ILDDFGVCDTDIYEVNKLRFHEALVLFSNFAFKENQCP 367 (951)
Q Consensus 291 ~~LlVlDdv~~~--~~~~~l~~~~~~~~~gs~IlvTtR~~~-v~~~~~~~~~~~~~l~~L~~~~a~~Lf~~~~~~~~~~~ 367 (951)
+-++|+|+++.. .....+...+.....++.+|++|.+.. +..... .....+.+.+++.+++.+.+..... .
T Consensus 114 ~kV~iiEp~~~Ld~~a~naLLk~LEep~~~~~~Ilvth~~~~ll~ti~-SRc~~~~~~~~~~~~~~~~L~~~~~-----~ 187 (325)
T PRK08699 114 LRVILIHPAESMNLQAANSLLKVLEEPPPQVVFLLVSHAADKVLPTIK-SRCRKMVLPAPSHEEALAYLRERGV-----A 187 (325)
T ss_pred ceEEEEechhhCCHHHHHHHHHHHHhCcCCCEEEEEeCChHhChHHHH-HHhhhhcCCCCCHHHHHHHHHhcCC-----C
Confidence 334456877533 344445444443345666777777653 332211 1127899999999999988866421 1
Q ss_pred hhHHHHHHHHHHHcCCCchH
Q 002220 368 GDLLALLERVLKYANGNPLA 387 (951)
Q Consensus 368 ~~~~~~~~~i~~~~~g~PLa 387 (951)
... ..+..++|-|+.
T Consensus 188 ~~~-----~~l~~~~g~p~~ 202 (325)
T PRK08699 188 EPE-----ERLAFHSGAPLF 202 (325)
T ss_pred cHH-----HHHHHhCCChhh
Confidence 111 113467888864
No 254
>cd00544 CobU Adenosylcobinamide kinase / adenosylcobinamide phosphate guanyltransferase (CobU). CobU is bifunctional cobalbumin biosynthesis enzymes which display adenosylcobinamide kinase and adenosylcobinamide phosphate guanyltransferase activity. This enzyme is a homotrimer with a propeller-like shape.
Probab=96.53 E-value=0.0064 Score=58.55 Aligned_cols=79 Identities=14% Similarity=0.073 Sum_probs=45.5
Q ss_pred EEEEecCCChhHHHHHHHHHHhhccccceeecccccchhcCCCChHHHHHHHHHHHhcCccccCCCCChHHHHHHhcC--
Q 002220 212 IGIWGMGGIGKTTLAGAVFKLISREFEGKCFMPNVREESENGGGLVYLRDRVVSEIFQEDIKIGTPYLPDYIVERLNR-- 289 (951)
Q Consensus 212 v~I~G~gGiGKTtLA~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~l~~~il~~l~~~~~~~~~~~~~~~l~~~l~~-- 289 (951)
+.|.|.+|.|||++|.+++.. ....++|+.... ..+ ..+++.+..............+....+.+.+..
T Consensus 2 ~li~G~~~sGKS~~a~~~~~~---~~~~~~y~at~~-----~~d-~em~~rI~~H~~~R~~~w~t~E~~~~l~~~l~~~~ 72 (169)
T cd00544 2 ILVTGGARSGKSRFAERLAAE---LGGPVTYIATAE-----AFD-DEMAERIARHRKRRPAHWRTIETPRDLVSALKELD 72 (169)
T ss_pred EEEECCCCCCHHHHHHHHHHh---cCCCeEEEEccC-----cCC-HHHHHHHHHHHHhCCCCceEeecHHHHHHHHHhcC
Confidence 678999999999999999865 234556664221 222 235555544333332222233333555555532
Q ss_pred CcEEEEEeCC
Q 002220 290 MKVLTVLDDV 299 (951)
Q Consensus 290 ~~~LlVlDdv 299 (951)
+.-.+++|.+
T Consensus 73 ~~~~VLIDcl 82 (169)
T cd00544 73 PGDVVLIDCL 82 (169)
T ss_pred CCCEEEEEcH
Confidence 2347999986
No 255
>COG1223 Predicted ATPase (AAA+ superfamily) [General function prediction only]
Probab=96.53 E-value=0.011 Score=58.54 Aligned_cols=169 Identities=18% Similarity=0.118 Sum_probs=93.5
Q ss_pred CCCcccchhhHHH---HHHhhccC----CCCcEEEEEEecCCChhHHHHHHHHHHhhccccceeecccccchhcCCCChH
Q 002220 185 SDGFVGLNSRIQK---IKSLLCIG----LPDFRTIGIWGMGGIGKTTLAGAVFKLISREFEGKCFMPNVREESENGGGLV 257 (951)
Q Consensus 185 ~~~~vGr~~~~~~---l~~~L~~~----~~~~~vv~I~G~gGiGKTtLA~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~ 257 (951)
-+++||.+....+ |.+.|... .-.++-|..+|++|.|||.+|+++++..+.-|-. +.
T Consensus 120 ~ddViGqEeAK~kcrli~~yLenPe~Fg~WAPknVLFyGppGTGKTm~Akalane~kvp~l~---vk------------- 183 (368)
T COG1223 120 LDDVIGQEEAKRKCRLIMEYLENPERFGDWAPKNVLFYGPPGTGKTMMAKALANEAKVPLLL---VK------------- 183 (368)
T ss_pred HhhhhchHHHHHHHHHHHHHhhChHHhcccCcceeEEECCCCccHHHHHHHHhcccCCceEE---ec-------------
Confidence 4578888766543 45556432 2347889999999999999999999865433211 10
Q ss_pred HHHHHHHHHHhcCccccCCCCChHHHHH----HhcCCcEEEEEeCCCChH--------------HHHHHHhccCC--CCC
Q 002220 258 YLRDRVVSEIFQEDIKIGTPYLPDYIVE----RLNRMKVLTVLDDVNKVR--------------QLHYLACVLDQ--FGP 317 (951)
Q Consensus 258 ~l~~~il~~l~~~~~~~~~~~~~~~l~~----~l~~~~~LlVlDdv~~~~--------------~~~~l~~~~~~--~~~ 317 (951)
..+.|-...+ +.. .++++ .-+.-++.+.+|.++-.. ...+++..+.. .+.
T Consensus 184 -at~liGehVG-------dga--r~Ihely~rA~~~aPcivFiDE~DAiaLdRryQelRGDVsEiVNALLTelDgi~ene 253 (368)
T COG1223 184 -ATELIGEHVG-------DGA--RRIHELYERARKAAPCIVFIDELDAIALDRRYQELRGDVSEIVNALLTELDGIKENE 253 (368)
T ss_pred -hHHHHHHHhh-------hHH--HHHHHHHHHHHhcCCeEEEehhhhhhhhhhhHHHhcccHHHHHHHHHHhccCcccCC
Confidence 0011111110 000 22222 223457899999875321 23444444432 245
Q ss_pred CCEEEEEeCCchhhhhc---CCCccceEEcCCCChhhhHHHHhhhhccCCCCChhHHHHHHHHHHHcCCC
Q 002220 318 GSRIIITTRDKRILDDF---GVCDTDIYEVNKLRFHEALVLFSNFAFKENQCPGDLLALLERVLKYANGN 384 (951)
Q Consensus 318 gs~IlvTtR~~~v~~~~---~~~~~~~~~l~~L~~~~a~~Lf~~~~~~~~~~~~~~~~~~~~i~~~~~g~ 384 (951)
|...|..|.....+... ... ..++..--+++|-.+++..++-.-.-+.+ .-.+.++++.+|.
T Consensus 254 GVvtIaaTN~p~~LD~aiRsRFE--eEIEF~LP~~eEr~~ile~y~k~~Plpv~---~~~~~~~~~t~g~ 318 (368)
T COG1223 254 GVVTIAATNRPELLDPAIRSRFE--EEIEFKLPNDEERLEILEYYAKKFPLPVD---ADLRYLAAKTKGM 318 (368)
T ss_pred ceEEEeecCChhhcCHHHHhhhh--heeeeeCCChHHHHHHHHHHHHhCCCccc---cCHHHHHHHhCCC
Confidence 66666667666554321 222 45777777888999999888733222111 1144566666664
No 256
>cd01133 F1-ATPase_beta F1 ATP synthase beta subunit, nucleotide-binding domain. The F-ATPase is found in bacterial plasma membranes, mitochondrial inner membranes and in chloroplast thylakoid membranes. It has also been found in the archaea Methanosarcina barkeri. It uses a proton gradient to drive ATP synthesis and hydrolyzes ATP to build the proton gradient. The extrinisic membrane domain, F1, is composed of alpha, beta, gamma, delta and epsilon subunits with a stoichiometry of 3:3:1:1:1. The beta subunit of ATP synthase is catalytic.
Probab=96.53 E-value=0.0055 Score=63.21 Aligned_cols=93 Identities=19% Similarity=0.180 Sum_probs=57.1
Q ss_pred cEEEEEEecCCChhHHHHHHHHHHhhccccceeecccccchhcCCCChHHHHHHHHHHHhcCcc----ccCCCCC-----
Q 002220 209 FRTIGIWGMGGIGKTTLAGAVFKLISREFEGKCFMPNVREESENGGGLVYLRDRVVSEIFQEDI----KIGTPYL----- 279 (951)
Q Consensus 209 ~~vv~I~G~gGiGKTtLA~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~l~~~il~~l~~~~~----~~~~~~~----- 279 (951)
-+.++|.|.+|+||||||+.+++.++.+|+..+++..+++. ...+..+.+.+...-..... ...+...
T Consensus 69 GQr~~If~~~G~GKTtLa~~i~~~i~~~~~~~~V~~~iGer---~~Ev~e~~~~~~~~~~~~~tvvv~~t~d~~~~~r~~ 145 (274)
T cd01133 69 GGKIGLFGGAGVGKTVLIMELINNIAKAHGGYSVFAGVGER---TREGNDLYHEMKESGVLSKTALVYGQMNEPPGARAR 145 (274)
T ss_pred CCEEEEecCCCCChhHHHHHHHHHHHhcCCCEEEEEEeccC---cHHHHHHHHHHHhcCCcceeEEEEECCCCCHHHHHH
Confidence 35789999999999999999999998888877777666543 22344444444332100000 0011100
Q ss_pred ----hHHHHHHh--c-CCcEEEEEeCCCChHH
Q 002220 280 ----PDYIVERL--N-RMKVLTVLDDVNKVRQ 304 (951)
Q Consensus 280 ----~~~l~~~l--~-~~~~LlVlDdv~~~~~ 304 (951)
+-.+.+++ + ++.+|+++||+-...+
T Consensus 146 ~~~~a~~~AEyfr~~~g~~Vl~~~Dsltr~a~ 177 (274)
T cd01133 146 VALTGLTMAEYFRDEEGQDVLLFIDNIFRFTQ 177 (274)
T ss_pred HHHHHHHHHHHHHHhcCCeEEEEEeChhHHHH
Confidence 12234444 3 8899999999854443
No 257
>KOG0733 consensus Nuclear AAA ATPase (VCP subfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=96.52 E-value=0.03 Score=62.36 Aligned_cols=53 Identities=26% Similarity=0.371 Sum_probs=41.3
Q ss_pred CCCcccchhhHHHHHHhhcc----------CCCCcEEEEEEecCCChhHHHHHHHHHHhhccc
Q 002220 185 SDGFVGLNSRIQKIKSLLCI----------GLPDFRTIGIWGMGGIGKTTLAGAVFKLISREF 237 (951)
Q Consensus 185 ~~~~vGr~~~~~~l~~~L~~----------~~~~~~vv~I~G~gGiGKTtLA~~~~~~~~~~f 237 (951)
..++=|.+..+.+|.+++.. +-...+=|.++|++|+|||.||++++....--|
T Consensus 189 f~diGG~d~~~~el~~li~~i~~Pe~~~~lGv~PprGvLlHGPPGCGKT~lA~AiAgel~vPf 251 (802)
T KOG0733|consen 189 FSDIGGLDKTLAELCELIIHIKHPEVFSSLGVRPPRGVLLHGPPGCGKTSLANAIAGELGVPF 251 (802)
T ss_pred hhhccChHHHHHHHHHHHHHhcCchhHhhcCCCCCCceeeeCCCCccHHHHHHHHhhhcCCce
Confidence 45678999999998887642 113457789999999999999999998765443
No 258
>PRK15429 formate hydrogenlyase transcriptional activator FhlA; Provisional
Probab=96.52 E-value=0.049 Score=65.83 Aligned_cols=48 Identities=21% Similarity=0.245 Sum_probs=38.1
Q ss_pred CCCcccchhhHHHHHHhhccCCCCcEEEEEEecCCChhHHHHHHHHHH
Q 002220 185 SDGFVGLNSRIQKIKSLLCIGLPDFRTIGIWGMGGIGKTTLAGAVFKL 232 (951)
Q Consensus 185 ~~~~vGr~~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~~~~~ 232 (951)
...++|+...+..+.+.+..-.....-|.|+|..|+|||++|+.+.+.
T Consensus 375 ~~~liG~S~~~~~~~~~~~~~a~~~~pVLI~GE~GTGK~~lA~~ih~~ 422 (686)
T PRK15429 375 FGEIIGRSEAMYSVLKQVEMVAQSDSTVLILGETGTGKELIARAIHNL 422 (686)
T ss_pred ccceeecCHHHHHHHHHHHHHhCCCCCEEEECCCCcCHHHHHHHHHHh
Confidence 357999999998887666533334457889999999999999999874
No 259
>KOG2228 consensus Origin recognition complex, subunit 4 [Replication, recombination and repair]
Probab=96.51 E-value=0.029 Score=58.01 Aligned_cols=174 Identities=20% Similarity=0.180 Sum_probs=94.6
Q ss_pred CCCCcccchhhHHHHHHhhccC--CCCcEEEEEEecCCChhHHHHHHHHHHhhccccceeecccccchhc-CCCChHHHH
Q 002220 184 YSDGFVGLNSRIQKIKSLLCIG--LPDFRTIGIWGMGGIGKTTLAGAVFKLISREFEGKCFMPNVREESE-NGGGLVYLR 260 (951)
Q Consensus 184 ~~~~~vGr~~~~~~l~~~L~~~--~~~~~vv~I~G~gGiGKTtLA~~~~~~~~~~f~~~~~~~~~~~~~~-~~~~~~~l~ 260 (951)
+-..++|-.++..++..++... .++..-|.|+|+.|.|||+|......+ .+.|.-.+.+......-. ..-.+..+.
T Consensus 22 ~~~~l~g~~~~~~~l~~~lkqt~~~gEsnsviiigprgsgkT~li~~~Ls~-~q~~~E~~l~v~Lng~~~~dk~al~~I~ 100 (408)
T KOG2228|consen 22 PHINLFGVQDEQKHLSELLKQTILHGESNSVIIIGPRGSGKTILIDTRLSD-IQENGENFLLVRLNGELQTDKIALKGIT 100 (408)
T ss_pred CCcceeehHHHHHHHHHHHHHHHHhcCCCceEEEccCCCCceEeeHHHHhh-HHhcCCeEEEEEECccchhhHHHHHHHH
Confidence 3456899999999999888522 133456789999999999998877665 333433333332222111 011233333
Q ss_pred HHHHHHHhcCccccCCCCC-hHHHHHHhc------CCcEEEEEeCCCChH----H--HHHHHh-ccCCCCCCCEEEEEeC
Q 002220 261 DRVVSEIFQEDIKIGTPYL-PDYIVERLN------RMKVLTVLDDVNKVR----Q--LHYLAC-VLDQFGPGSRIIITTR 326 (951)
Q Consensus 261 ~~il~~l~~~~~~~~~~~~-~~~l~~~l~------~~~~LlVlDdv~~~~----~--~~~l~~-~~~~~~~gs~IlvTtR 326 (951)
+++..++.........-.+ ...+-..|+ +.++.+|+|.++--. | +-.+.. .-....|-+-|-+|||
T Consensus 101 rql~~e~~~~~k~~gsfte~l~~lL~~L~~~~~~t~~~ViFIldEfDlf~~h~rQtllYnlfDisqs~r~Piciig~Ttr 180 (408)
T KOG2228|consen 101 RQLALELNRIVKSFGSFTENLSKLLEALKKGDETTSGKVIFILDEFDLFAPHSRQTLLYNLFDISQSARAPICIIGVTTR 180 (408)
T ss_pred HHHHHHHhhhheeecccchhHHHHHHHHhcCCCCCCceEEEEeehhhccccchhhHHHHHHHHHHhhcCCCeEEEEeecc
Confidence 4443333322222222222 245555553 236899998875322 1 111221 1122356777889999
Q ss_pred Cc-------hhhhhcCCCccceEEcCCCChhhhHHHHhhhh
Q 002220 327 DK-------RILDDFGVCDTDIYEVNKLRFHEALVLFSNFA 360 (951)
Q Consensus 327 ~~-------~v~~~~~~~~~~~~~l~~L~~~~a~~Lf~~~~ 360 (951)
-. .|-+...-. .++-++.++-++-..+++...
T Consensus 181 ld~lE~LEKRVKSRFshr--~I~m~~~~~l~~yv~l~r~ll 219 (408)
T KOG2228|consen 181 LDILELLEKRVKSRFSHR--VIFMLPSLPLGDYVDLYRKLL 219 (408)
T ss_pred ccHHHHHHHHHHhhcccc--eeeccCCCChHHHHHHHHHHh
Confidence 65 232333222 456667777777766666554
No 260
>PRK06696 uridine kinase; Validated
Probab=96.51 E-value=0.004 Score=63.59 Aligned_cols=46 Identities=22% Similarity=0.264 Sum_probs=35.4
Q ss_pred chhhHHHHHHhhcc-CCCCcEEEEEEecCCChhHHHHHHHHHHhhcc
Q 002220 191 LNSRIQKIKSLLCI-GLPDFRTIGIWGMGGIGKTTLAGAVFKLISRE 236 (951)
Q Consensus 191 r~~~~~~l~~~L~~-~~~~~~vv~I~G~gGiGKTtLA~~~~~~~~~~ 236 (951)
|++.+++|.+.+.. ..+...+|+|.|.+|.||||+|++++..+...
T Consensus 3 ~~~~~~~la~~~~~~~~~~~~iI~I~G~sgsGKSTlA~~L~~~l~~~ 49 (223)
T PRK06696 3 RKQLIKELAEHILTLNLTRPLRVAIDGITASGKTTFADELAEEIKKR 49 (223)
T ss_pred HHHHHHHHHHHHHHhCCCCceEEEEECCCCCCHHHHHHHHHHHHHHc
Confidence 55566666666542 34567899999999999999999999877543
No 261
>PRK10867 signal recognition particle protein; Provisional
Probab=96.50 E-value=0.063 Score=59.81 Aligned_cols=29 Identities=34% Similarity=0.478 Sum_probs=24.9
Q ss_pred CcEEEEEEecCCChhHHHHHHHHHHhhcc
Q 002220 208 DFRTIGIWGMGGIGKTTLAGAVFKLISRE 236 (951)
Q Consensus 208 ~~~vv~I~G~gGiGKTtLA~~~~~~~~~~ 236 (951)
...+|.++|.+|+||||.|.+++..++.+
T Consensus 99 ~p~vI~~vG~~GsGKTTtaakLA~~l~~~ 127 (433)
T PRK10867 99 PPTVIMMVGLQGAGKTTTAGKLAKYLKKK 127 (433)
T ss_pred CCEEEEEECCCCCcHHHHHHHHHHHHHHh
Confidence 36899999999999999999998866554
No 262
>COG1618 Predicted nucleotide kinase [Nucleotide transport and metabolism]
Probab=96.49 E-value=0.0025 Score=58.52 Aligned_cols=39 Identities=31% Similarity=0.383 Sum_probs=29.7
Q ss_pred cEEEEEEecCCChhHHHHHHHHHHhhcc-ccce-eeccccc
Q 002220 209 FRTIGIWGMGGIGKTTLAGAVFKLISRE-FEGK-CFMPNVR 247 (951)
Q Consensus 209 ~~vv~I~G~gGiGKTtLA~~~~~~~~~~-f~~~-~~~~~~~ 247 (951)
..-|+|.|++|+||||+++.+++.++.. |... +|...++
T Consensus 5 ~mki~ITG~PGvGKtTl~~ki~e~L~~~g~kvgGf~t~EVR 45 (179)
T COG1618 5 AMKIFITGRPGVGKTTLVLKIAEKLREKGYKVGGFITPEVR 45 (179)
T ss_pred ceEEEEeCCCCccHHHHHHHHHHHHHhcCceeeeEEeeeee
Confidence 3468999999999999999999987765 6543 4444443
No 263
>PF00448 SRP54: SRP54-type protein, GTPase domain; InterPro: IPR000897 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ]. SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. This entry represents the GTPase domain of the 54 kDa SRP54 component, a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 of the signal recognition particle has a three-domain structure: an N-terminal helical bundle domain, a GTPase domain, and the M-domain that binds the 7s RNA and also binds the signal sequence. The extreme C-terminal region is glycine-rich and lower in complexity and poorly conserved between species. The GTPase domain is evolutionary related to P-loop NTPase domains found in a variety of other proteins []. These proteins include Escherichia coli and Bacillus subtilis ffh protein (P48), which seems to be the prokaryotic counterpart of SRP54; signal recognition particle receptor alpha subunit (docking protein), an integral membrane GTP-binding protein which ensures, in conjunction with SRP, the correct targeting of nascent secretory proteins to the endoplasmic reticulum membrane; bacterial FtsY protein, which is believed to play a similar role to that of the docking protein in eukaryotes; the pilA protein from Neisseria gonorrhoeae, the homologue of ftsY; and bacterial flagellar biosynthesis protein flhF.; GO: 0005525 GTP binding, 0006614 SRP-dependent cotranslational protein targeting to membrane; PDB: 2OG2_A 3B9Q_A 3DM9_B 3DMD_B 3E70_C 3DM5_B 2XXA_C 2J28_9 1ZU5_B 1ZU4_A ....
Probab=96.49 E-value=0.0059 Score=60.54 Aligned_cols=35 Identities=20% Similarity=0.251 Sum_probs=26.7
Q ss_pred cEEEEEEecCCChhHHHHHHHHHHhhccccceeec
Q 002220 209 FRTIGIWGMGGIGKTTLAGAVFKLISREFEGKCFM 243 (951)
Q Consensus 209 ~~vv~I~G~gGiGKTtLA~~~~~~~~~~f~~~~~~ 243 (951)
++++.++|+.|+||||.+.+++.+.+.+-..+..+
T Consensus 1 p~vi~lvGptGvGKTTt~aKLAa~~~~~~~~v~li 35 (196)
T PF00448_consen 1 PKVIALVGPTGVGKTTTIAKLAARLKLKGKKVALI 35 (196)
T ss_dssp SEEEEEEESTTSSHHHHHHHHHHHHHHTT--EEEE
T ss_pred CEEEEEECCCCCchHhHHHHHHHHHhhccccceee
Confidence 47999999999999999999998766553334444
No 264
>TIGR02974 phageshock_pspF psp operon transcriptional activator PspF. Members of this protein family are PspF, the sigma-54-dependent transcriptional activator of the phage shock protein (psp) operon, in Escherichia coli and numerous other species. The psp operon is induced by a number of stress conditions, including heat shock, ethanol, and filamentous phage infection. Changed com_name to adhere to TIGR role notes conventions. 09/15/06 - DMH
Probab=96.47 E-value=0.038 Score=59.82 Aligned_cols=45 Identities=22% Similarity=0.266 Sum_probs=34.4
Q ss_pred cccchhhHHHHHHhhccCCCCcEEEEEEecCCChhHHHHHHHHHH
Q 002220 188 FVGLNSRIQKIKSLLCIGLPDFRTIGIWGMGGIGKTTLAGAVFKL 232 (951)
Q Consensus 188 ~vGr~~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~~~~~ 232 (951)
+||....+.++.+.+..-.....-|.|+|..|+||+++|+.+.+.
T Consensus 1 liG~S~~m~~~~~~~~~~a~~~~pVLI~GE~GtGK~~lAr~iH~~ 45 (329)
T TIGR02974 1 LIGESNAFLEVLEQVSRLAPLDRPVLIIGERGTGKELIAARLHYL 45 (329)
T ss_pred CCcCCHHHHHHHHHHHHHhCCCCCEEEECCCCChHHHHHHHHHHh
Confidence 467777777777766533334456889999999999999998763
No 265
>PF14532 Sigma54_activ_2: Sigma-54 interaction domain; PDB: 3CO5_B 3N70_H.
Probab=96.47 E-value=0.0049 Score=57.55 Aligned_cols=44 Identities=25% Similarity=0.300 Sum_probs=31.7
Q ss_pred ccchhhHHHHHHhhccCCCCcEEEEEEecCCChhHHHHHHHHHH
Q 002220 189 VGLNSRIQKIKSLLCIGLPDFRTIGIWGMGGIGKTTLAGAVFKL 232 (951)
Q Consensus 189 vGr~~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~~~~~ 232 (951)
||....++++.+.+..-......|.|+|..|+||+++|+.++..
T Consensus 1 vG~S~~~~~l~~~l~~~a~~~~pvli~GE~GtGK~~~A~~lh~~ 44 (138)
T PF14532_consen 1 VGKSPAMRRLRRQLERLAKSSSPVLITGEPGTGKSLLARALHRY 44 (138)
T ss_dssp --SCHHHHHHHHHHHHHHCSSS-EEEECCTTSSHHHHHHCCHHT
T ss_pred CCCCHHHHHHHHHHHHHhCCCCcEEEEcCCCCCHHHHHHHHHhh
Confidence 57777777777766533344567899999999999999998874
No 266
>COG1484 DnaC DNA replication protein [DNA replication, recombination, and repair]
Probab=96.45 E-value=0.0089 Score=61.93 Aligned_cols=36 Identities=25% Similarity=0.221 Sum_probs=28.5
Q ss_pred CcEEEEEEecCCChhHHHHHHHHHHhhccccceeec
Q 002220 208 DFRTIGIWGMGGIGKTTLAGAVFKLISREFEGKCFM 243 (951)
Q Consensus 208 ~~~vv~I~G~gGiGKTtLA~~~~~~~~~~f~~~~~~ 243 (951)
+..-+.++|.+|+|||.||.++.+++...--.+.|+
T Consensus 104 ~~~nl~l~G~~G~GKThLa~Ai~~~l~~~g~sv~f~ 139 (254)
T COG1484 104 RGENLVLLGPPGVGKTHLAIAIGNELLKAGISVLFI 139 (254)
T ss_pred cCCcEEEECCCCCcHHHHHHHHHHHHHHcCCeEEEE
Confidence 556789999999999999999999877443344454
No 267
>cd01120 RecA-like_NTPases RecA-like NTPases. This family includes the NTP binding domain of F1 and V1 H+ATPases, DnaB and related helicases as well as bacterial RecA and related eukaryotic and archaeal recombinases. This group also includes bacterial conjugation proteins and related DNA transfer proteins involved in type II and type IV secretion.
Probab=96.42 E-value=0.0053 Score=59.33 Aligned_cols=34 Identities=29% Similarity=0.268 Sum_probs=27.0
Q ss_pred EEEEEecCCChhHHHHHHHHHHhhccccceeecc
Q 002220 211 TIGIWGMGGIGKTTLAGAVFKLISREFEGKCFMP 244 (951)
Q Consensus 211 vv~I~G~gGiGKTtLA~~~~~~~~~~f~~~~~~~ 244 (951)
++.|+|.+|.||||+|..++.....+-..++|+.
T Consensus 1 ~~~i~G~~G~GKT~l~~~i~~~~~~~~~~v~~~~ 34 (165)
T cd01120 1 LILVFGPTGSGKTTLALQLALNIATKGGKVVYVD 34 (165)
T ss_pred CeeEeCCCCCCHHHHHHHHHHHHHhcCCEEEEEE
Confidence 3689999999999999999987665545566654
No 268
>KOG2123 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.41 E-value=0.00015 Score=71.91 Aligned_cols=84 Identities=25% Similarity=0.269 Sum_probs=47.7
Q ss_pred CCCcEEeeccCCCCccCCcccCCcCCCCCCCCEEeccCCCCCCcCccCCCCCCCCEEEccCCCCcccc--hhhcCCCCCC
Q 002220 816 QGLRQLSLIGCSELKCSGWVLPTRISKLSSLERLQLSGCEIKEIPEDIDCLSSLEVLDLSGSKIEILP--TSIGQLSRLR 893 (951)
Q Consensus 816 ~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~l~~l~~~l~~l~~L~~L~L~~n~l~~l~--~~l~~l~~L~ 893 (951)
.+.+.|+.+||..... .....++.|+.|.|+-|+|+++. .+..+++|++|+|..|.|.++. .-+.++|+|+
T Consensus 19 ~~vkKLNcwg~~L~DI------sic~kMp~lEVLsLSvNkIssL~-pl~rCtrLkElYLRkN~I~sldEL~YLknlpsLr 91 (388)
T KOG2123|consen 19 ENVKKLNCWGCGLDDI------SICEKMPLLEVLSLSVNKISSLA-PLQRCTRLKELYLRKNCIESLDELEYLKNLPSLR 91 (388)
T ss_pred HHhhhhcccCCCccHH------HHHHhcccceeEEeeccccccch-hHHHHHHHHHHHHHhcccccHHHHHHHhcCchhh
Confidence 3445555555554432 12345566666666666666553 2455666666666666666554 3456666666
Q ss_pred EEeeCCCCCCCcC
Q 002220 894 QLNLLDCNMLQSI 906 (951)
Q Consensus 894 ~L~L~~~~~l~~l 906 (951)
.|.|..||-...-
T Consensus 92 ~LWL~ENPCc~~a 104 (388)
T KOG2123|consen 92 TLWLDENPCCGEA 104 (388)
T ss_pred hHhhccCCccccc
Confidence 6666666655443
No 269
>KOG1514 consensus Origin recognition complex, subunit 1, and related proteins [Replication, recombination and repair]
Probab=96.40 E-value=0.071 Score=60.73 Aligned_cols=197 Identities=13% Similarity=0.124 Sum_probs=111.6
Q ss_pred CCCCcccchhhHHHHHHhhcc---CCCCcEEEEEEecCCChhHHHHHHHHHHhh--------ccccceeecccccchhcC
Q 002220 184 YSDGFVGLNSRIQKIKSLLCI---GLPDFRTIGIWGMGGIGKTTLAGAVFKLIS--------REFEGKCFMPNVREESEN 252 (951)
Q Consensus 184 ~~~~~vGr~~~~~~l~~~L~~---~~~~~~vv~I~G~gGiGKTtLA~~~~~~~~--------~~f~~~~~~~~~~~~~~~ 252 (951)
++..+=+||.+..+|...+.. .......+-|.|.+|.|||..+..|.+.++ ..|++ +.+...+
T Consensus 394 vp~sLpcRe~E~~~I~~f~~~~i~~~~~g~~mYIsGvPGtGKT~tV~~Vm~~Lq~~s~~~e~p~f~y-veINgm~----- 467 (767)
T KOG1514|consen 394 VPESLPCRENEFSEIEDFLRSFISDQGLGSCMYISGVPGTGKTATVLEVMKELQTSSAQKELPKFDY-VEINGLR----- 467 (767)
T ss_pred ccccccchhHHHHHHHHHHHhhcCCCCCceeEEEecCCCCCceehHHHHHHHHHHHHhhcCCCCccE-EEEccee-----
Confidence 566788999999999988752 223345899999999999999999998543 23442 2232221
Q ss_pred CCChHHHHHHHHHHHhcCccccCCCCCh-HHHHHHhc-----CCcEEEEEeCCCChHH--HHHHHhccCC-CCCCCEEEE
Q 002220 253 GGGLVYLRDRVVSEIFQEDIKIGTPYLP-DYIVERLN-----RMKVLTVLDDVNKVRQ--LHYLACVLDQ-FGPGSRIII 323 (951)
Q Consensus 253 ~~~~~~l~~~il~~l~~~~~~~~~~~~~-~~l~~~l~-----~~~~LlVlDdv~~~~~--~~~l~~~~~~-~~~gs~Ilv 323 (951)
-.....+...|..++.+..... ... +.+..+.. .+.+++++|+++..-. -+-+-..+.| ..++|+++|
T Consensus 468 l~~~~~~Y~~I~~~lsg~~~~~---~~al~~L~~~f~~~k~~~~~~VvLiDElD~Lvtr~QdVlYn~fdWpt~~~sKLvv 544 (767)
T KOG1514|consen 468 LASPREIYEKIWEALSGERVTW---DAALEALNFRFTVPKPKRSTTVVLIDELDILVTRSQDVLYNIFDWPTLKNSKLVV 544 (767)
T ss_pred ecCHHHHHHHHHHhcccCcccH---HHHHHHHHHhhccCCCCCCCEEEEeccHHHHhcccHHHHHHHhcCCcCCCCceEE
Confidence 2335566667776665543221 111 45555543 4568888998854322 1122222333 247787766
Q ss_pred EeCCc-----------hhhhhcCCCccceEEcCCCChhhhHHHHhhhhccCCC-CChhHHHHHHHHHHHcCCCchHHHHH
Q 002220 324 TTRDK-----------RILDDFGVCDTDIYEVNKLRFHEALVLFSNFAFKENQ-CPGDLLALLERVLKYANGNPLALRVL 391 (951)
Q Consensus 324 TtR~~-----------~v~~~~~~~~~~~~~l~~L~~~~a~~Lf~~~~~~~~~-~~~~~~~~~~~i~~~~~g~PLal~~~ 391 (951)
-+=.. .+...+|. ..+...+-+.++-.+....+.-+-.. .....+-++++|+.-.|..-.|+.+.
T Consensus 545 i~IaNTmdlPEr~l~nrvsSRlg~---tRi~F~pYth~qLq~Ii~~RL~~~~~f~~~aielvarkVAavSGDaRraldic 621 (767)
T KOG1514|consen 545 IAIANTMDLPERLLMNRVSSRLGL---TRICFQPYTHEQLQEIISARLKGLDAFENKAIELVARKVAAVSGDARRALDIC 621 (767)
T ss_pred EEecccccCHHHHhccchhhhccc---eeeecCCCCHHHHHHHHHHhhcchhhcchhHHHHHHHHHHhccccHHHHHHHH
Confidence 54321 22333344 56777777877777777666533211 12223334445554444444444444
Q ss_pred h
Q 002220 392 G 392 (951)
Q Consensus 392 ~ 392 (951)
-
T Consensus 622 ~ 622 (767)
T KOG1514|consen 622 R 622 (767)
T ss_pred H
Confidence 3
No 270
>cd00561 CobA_CobO_BtuR ATP:corrinoid adenosyltransferase BtuR/CobO/CobP. This family consists of the BtuR, CobO, CobP proteins all of which are Cob(I)alamin (vitamin B12) adenosyltransferase, which is involved in cobalamin (vitamin B12) biosynthesis. This enzyme is a homodimer, which catalyzes the adenosylation reaction: ATP + cob(I)alamin + H2O <= phosphate + diphosphate + adenosylcobalamin.
Probab=96.39 E-value=0.0067 Score=57.18 Aligned_cols=117 Identities=15% Similarity=0.080 Sum_probs=58.8
Q ss_pred EEEEEEecCCChhHHHHHHHHHHhhccccceeecccccchhcCCCChHHHHHHHHHHHhcCccc------cCCCCC----
Q 002220 210 RTIGIWGMGGIGKTTLAGAVFKLISREFEGKCFMPNVREESENGGGLVYLRDRVVSEIFQEDIK------IGTPYL---- 279 (951)
Q Consensus 210 ~vv~I~G~gGiGKTtLA~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~l~~~il~~l~~~~~~------~~~~~~---- 279 (951)
..|-|++..|.||||+|...+-+...+=..+.++.-.... . ..+-....+.+ ..+.-.... ..+...
T Consensus 3 G~i~vy~g~G~Gkt~~a~g~~~ra~~~g~~v~~vQFlKg~-~-~~gE~~~l~~l-~~v~~~~~g~~~~~~~~~~~~~~~~ 79 (159)
T cd00561 3 GLIQVYTGNGKGKTTAALGLALRALGHGYRVGVVQFLKGG-W-KYGELKALERL-PNIEIHRMGRGFFWTTENDEEDIAA 79 (159)
T ss_pred CEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEEEeCCC-C-ccCHHHHHHhC-CCcEEEECCCCCccCCCChHHHHHH
Confidence 4678888899999999999887654443333332211110 0 11222222222 000000000 000000
Q ss_pred ---h-HHHHHHhcCC-cEEEEEeCCCCh-----HHHHHHHhccCCCCCCCEEEEEeCCch
Q 002220 280 ---P-DYIVERLNRM-KVLTVLDDVNKV-----RQLHYLACVLDQFGPGSRIIITTRDKR 329 (951)
Q Consensus 280 ---~-~~l~~~l~~~-~~LlVlDdv~~~-----~~~~~l~~~~~~~~~gs~IlvTtR~~~ 329 (951)
. +..++.+... -=|+|||++-.. -..+.+...+....++..||+|.|+..
T Consensus 80 a~~~~~~a~~~~~~~~~dLlVLDEi~~a~~~gli~~~~v~~ll~~rp~~~evIlTGr~~p 139 (159)
T cd00561 80 AAEGWAFAKEAIASGEYDLVILDEINYALGYGLLDVEEVVDLLKAKPEDLELVLTGRNAP 139 (159)
T ss_pred HHHHHHHHHHHHhcCCCCEEEEechHhHhhCCCCCHHHHHHHHHcCCCCCEEEEECCCCC
Confidence 1 2233344443 459999998422 224444444555567788999999863
No 271
>PRK09361 radB DNA repair and recombination protein RadB; Provisional
Probab=96.38 E-value=0.0083 Score=61.53 Aligned_cols=48 Identities=19% Similarity=0.201 Sum_probs=37.0
Q ss_pred HHHHhhccCCCCcEEEEEEecCCChhHHHHHHHHHHhhccccceeecc
Q 002220 197 KIKSLLCIGLPDFRTIGIWGMGGIGKTTLAGAVFKLISREFEGKCFMP 244 (951)
Q Consensus 197 ~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~~~~~~~~~f~~~~~~~ 244 (951)
.|.++|..+-..-.++.|+|.+|.|||++|.+++.........++|+.
T Consensus 11 ~lD~~l~GGi~~g~i~~i~G~~GsGKT~l~~~la~~~~~~~~~v~yi~ 58 (225)
T PRK09361 11 MLDELLGGGFERGTITQIYGPPGSGKTNICLQLAVEAAKNGKKVIYID 58 (225)
T ss_pred HHHHHhcCCCCCCeEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEE
Confidence 455566444455689999999999999999999987655556677875
No 272
>TIGR01425 SRP54_euk signal recognition particle protein SRP54. This model represents examples from the eukaryotic cytosol of the signal recognition particle protein component, SRP54. This GTP-binding protein is a component of the eukaryotic signal recognition particle, along with several other protein subunits and a 7S RNA. Some species, including Arabidopsis, have several closely related forms. The extreme C-terminal region is glycine-rich and lower in complexity, poorly conserved between species, and excluded from this model.
Probab=96.38 E-value=0.092 Score=58.13 Aligned_cols=29 Identities=28% Similarity=0.296 Sum_probs=24.8
Q ss_pred CcEEEEEEecCCChhHHHHHHHHHHhhcc
Q 002220 208 DFRTIGIWGMGGIGKTTLAGAVFKLISRE 236 (951)
Q Consensus 208 ~~~vv~I~G~gGiGKTtLA~~~~~~~~~~ 236 (951)
...+|.++|.+|+||||+|.+++..++.+
T Consensus 99 ~~~vi~lvG~~GvGKTTtaaKLA~~l~~~ 127 (429)
T TIGR01425 99 KQNVIMFVGLQGSGKTTTCTKLAYYYQRK 127 (429)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHC
Confidence 36899999999999999999998766544
No 273
>COG0470 HolB ATPase involved in DNA replication [DNA replication, recombination, and repair]
Probab=96.37 E-value=0.03 Score=61.21 Aligned_cols=48 Identities=21% Similarity=0.151 Sum_probs=36.8
Q ss_pred CcccchhhHHHHHHhhccCCCCcEEEEEEecCCChhHHHHHHHHHHhh
Q 002220 187 GFVGLNSRIQKIKSLLCIGLPDFRTIGIWGMGGIGKTTLAGAVFKLIS 234 (951)
Q Consensus 187 ~~vGr~~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~~~~~~~ 234 (951)
.++|-+....++..+..........+.++|++|+||||+|.++++.+-
T Consensus 2 ~~~~~~~~~~~l~~~~~~~~~~~halL~~Gp~G~Gktt~a~~lA~~l~ 49 (325)
T COG0470 2 ELVPWQEAVKRLLVQALESGRLPHALLFYGPPGVGKTTAALALAKELL 49 (325)
T ss_pred CcccchhHHHHHHHHHHhcCCCCceeeeeCCCCCCHHHHHHHHHHHHh
Confidence 356777777777777753333445699999999999999999998764
No 274
>COG2607 Predicted ATPase (AAA+ superfamily) [General function prediction only]
Probab=96.37 E-value=0.054 Score=53.42 Aligned_cols=114 Identities=19% Similarity=0.224 Sum_probs=68.7
Q ss_pred CCcccchhhHHHHHHhhc--cCCCCcEEEEEEecCCChhHHHHHHHHHHhhccccceeecccccchhcCCCChHHHHHHH
Q 002220 186 DGFVGLNSRIQKIKSLLC--IGLPDFRTIGIWGMGGIGKTTLAGAVFKLISREFEGKCFMPNVREESENGGGLVYLRDRV 263 (951)
Q Consensus 186 ~~~vGr~~~~~~l~~~L~--~~~~~~~vv~I~G~gGiGKTtLA~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~l~~~i 263 (951)
..++|.|...+.|.+--. ...-..--|.+||.-|+|||.|++++.+.+....-..+=|. ..++..+
T Consensus 60 ~~l~Gvd~qk~~L~~NT~~F~~G~pANnVLLwGaRGtGKSSLVKA~~~e~~~~glrLVEV~--------k~dl~~L---- 127 (287)
T COG2607 60 ADLVGVDRQKEALVRNTEQFAEGLPANNVLLWGARGTGKSSLVKALLNEYADEGLRLVEVD--------KEDLATL---- 127 (287)
T ss_pred HHHhCchHHHHHHHHHHHHHHcCCcccceEEecCCCCChHHHHHHHHHHHHhcCCeEEEEc--------HHHHhhH----
Confidence 468999998888765322 12223456789999999999999999998877766533321 1111111
Q ss_pred HHHHhcCccccCCCCChHHHHHHh--cCCcEEEEEeCCC---ChHHHHHHHhccCC---CCCCCEEEEEeCCc
Q 002220 264 VSEIFQEDIKIGTPYLPDYIVERL--NRMKVLTVLDDVN---KVRQLHYLACVLDQ---FGPGSRIIITTRDK 328 (951)
Q Consensus 264 l~~l~~~~~~~~~~~~~~~l~~~l--~~~~~LlVlDdv~---~~~~~~~l~~~~~~---~~~gs~IlvTtR~~ 328 (951)
..|.+.| +.+|+.|..||.. +....+.+...+.. ..|...++..|.++
T Consensus 128 -----------------p~l~~~Lr~~~~kFIlFcDDLSFe~gd~~yK~LKs~LeG~ve~rP~NVl~YATSNR 183 (287)
T COG2607 128 -----------------PDLVELLRARPEKFILFCDDLSFEEGDDAYKALKSALEGGVEGRPANVLFYATSNR 183 (287)
T ss_pred -----------------HHHHHHHhcCCceEEEEecCCCCCCCchHHHHHHHHhcCCcccCCCeEEEEEecCC
Confidence 1222222 3578999999983 33345555555432 23444455555444
No 275
>PRK04132 replication factor C small subunit; Provisional
Probab=96.37 E-value=0.057 Score=64.87 Aligned_cols=151 Identities=17% Similarity=0.171 Sum_probs=87.7
Q ss_pred cCCChhHHHHHHHHHHh-hccccceeecccccchhcCCCChHHHHHHHHHHHhcCccccCCCCChHHHHHHhcCCcEEEE
Q 002220 217 MGGIGKTTLAGAVFKLI-SREFEGKCFMPNVREESENGGGLVYLRDRVVSEIFQEDIKIGTPYLPDYIVERLNRMKVLTV 295 (951)
Q Consensus 217 ~gGiGKTtLA~~~~~~~-~~~f~~~~~~~~~~~~~~~~~~~~~l~~~il~~l~~~~~~~~~~~~~~~l~~~l~~~~~LlV 295 (951)
+.|+||||+|..+++++ .+.+...+.-.+.. + ..++..++ .++.......... ..+.-++|
T Consensus 574 Ph~lGKTT~A~ala~~l~g~~~~~~~lElNAS---d-~rgid~IR-~iIk~~a~~~~~~-------------~~~~KVvI 635 (846)
T PRK04132 574 PTVLHNTTAALALARELFGENWRHNFLELNAS---D-ERGINVIR-EKVKEFARTKPIG-------------GASFKIIF 635 (846)
T ss_pred CCcccHHHHHHHHHHhhhcccccCeEEEEeCC---C-cccHHHHH-HHHHHHHhcCCcC-------------CCCCEEEE
Confidence 77899999999999975 33332222221211 1 22344333 3333322111100 12457999
Q ss_pred EeCCCChH--HHHHHHhccCCCCCCCEEEEEeCCc-hhhhhcCCCccceEEcCCCChhhhHHHHhhhhccCCCCChhHHH
Q 002220 296 LDDVNKVR--QLHYLACVLDQFGPGSRIIITTRDK-RILDDFGVCDTDIYEVNKLRFHEALVLFSNFAFKENQCPGDLLA 372 (951)
Q Consensus 296 lDdv~~~~--~~~~l~~~~~~~~~gs~IlvTtR~~-~v~~~~~~~~~~~~~l~~L~~~~a~~Lf~~~~~~~~~~~~~~~~ 372 (951)
+|+++... +...++..+......+++|+++.+. .+..... ..+..+.+.+++.++..+.+.+.+-......+ .+
T Consensus 636 IDEaD~Lt~~AQnALLk~lEep~~~~~FILi~N~~~kIi~tIr-SRC~~i~F~~ls~~~i~~~L~~I~~~Egi~i~--~e 712 (846)
T PRK04132 636 LDEADALTQDAQQALRRTMEMFSSNVRFILSCNYSSKIIEPIQ-SRCAIFRFRPLRDEDIAKRLRYIAENEGLELT--EE 712 (846)
T ss_pred EECcccCCHHHHHHHHHHhhCCCCCeEEEEEeCChhhCchHHh-hhceEEeCCCCCHHHHHHHHHHHHHhcCCCCC--HH
Confidence 99998553 5666666666555677777766654 3322211 11278999999999998888776533221111 24
Q ss_pred HHHHHHHHcCCCchHH
Q 002220 373 LLERVLKYANGNPLAL 388 (951)
Q Consensus 373 ~~~~i~~~~~g~PLal 388 (951)
....|++.++|.+-..
T Consensus 713 ~L~~Ia~~s~GDlR~A 728 (846)
T PRK04132 713 GLQAILYIAEGDMRRA 728 (846)
T ss_pred HHHHHHHHcCCCHHHH
Confidence 6788999999987443
No 276
>PRK07667 uridine kinase; Provisional
Probab=96.36 E-value=0.0061 Score=60.63 Aligned_cols=42 Identities=19% Similarity=0.252 Sum_probs=33.1
Q ss_pred HHHHHHhhccCCCCcEEEEEEecCCChhHHHHHHHHHHhhcc
Q 002220 195 IQKIKSLLCIGLPDFRTIGIWGMGGIGKTTLAGAVFKLISRE 236 (951)
Q Consensus 195 ~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~~~~~~~~~ 236 (951)
.+++.+.+....+...+|+|.|.+|.||||+|+.+...+...
T Consensus 3 ~~~~~~~~~~~~~~~~iIgI~G~~gsGKStla~~L~~~l~~~ 44 (193)
T PRK07667 3 TNELINIMKKHKENRFILGIDGLSRSGKTTFVANLKENMKQE 44 (193)
T ss_pred HHHHHHHHHhcCCCCEEEEEECCCCCCHHHHHHHHHHHHHhC
Confidence 455666665555666899999999999999999999876543
No 277
>PRK10416 signal recognition particle-docking protein FtsY; Provisional
Probab=96.31 E-value=0.014 Score=62.48 Aligned_cols=29 Identities=28% Similarity=0.338 Sum_probs=25.6
Q ss_pred CcEEEEEEecCCChhHHHHHHHHHHhhcc
Q 002220 208 DFRTIGIWGMGGIGKTTLAGAVFKLISRE 236 (951)
Q Consensus 208 ~~~vv~I~G~gGiGKTtLA~~~~~~~~~~ 236 (951)
...+++++|++|+||||++..++..++..
T Consensus 113 ~~~vi~lvGpnGsGKTTt~~kLA~~l~~~ 141 (318)
T PRK10416 113 KPFVILVVGVNGVGKTTTIGKLAHKYKAQ 141 (318)
T ss_pred CCeEEEEECCCCCcHHHHHHHHHHHHHhc
Confidence 46899999999999999999999877654
No 278
>PRK05800 cobU adenosylcobinamide kinase/adenosylcobinamide-phosphate guanylyltransferase; Validated
Probab=96.27 E-value=0.0074 Score=58.27 Aligned_cols=79 Identities=10% Similarity=-0.034 Sum_probs=43.3
Q ss_pred EEEEEecCCChhHHHHHHHHHHhhccccceeecccccchhcCCCChHHHHHHHHHHHhcCccccCCCCC---h-HHHHHH
Q 002220 211 TIGIWGMGGIGKTTLAGAVFKLISREFEGKCFMPNVREESENGGGLVYLRDRVVSEIFQEDIKIGTPYL---P-DYIVER 286 (951)
Q Consensus 211 vv~I~G~gGiGKTtLA~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~l~~~il~~l~~~~~~~~~~~~---~-~~l~~~ 286 (951)
++.|.|.+|.||||+|..++.+... ...|+... ...-..+++++..............+. . +.+...
T Consensus 3 ~ili~G~~~sGKS~~a~~l~~~~~~---~~~~iat~------~~~~~e~~~ri~~h~~~R~~~w~t~E~~~~l~~~i~~~ 73 (170)
T PRK05800 3 LILVTGGARSGKSRFAERLAAQSGL---QVLYIATA------QPFDDEMAARIAHHRQRRPAHWQTVEEPLDLAELLRAD 73 (170)
T ss_pred EEEEECCCCccHHHHHHHHHHHcCC---CcEeCcCC------CCChHHHHHHHHHHHhcCCCCCeEecccccHHHHHHhh
Confidence 6889999999999999999875422 23454311 122234555555544433222222222 1 333332
Q ss_pred hcCCcEEEEEeCC
Q 002220 287 LNRMKVLTVLDDV 299 (951)
Q Consensus 287 l~~~~~LlVlDdv 299 (951)
.. +.-++++|.+
T Consensus 74 ~~-~~~~VlID~L 85 (170)
T PRK05800 74 AA-PGRCVLVDCL 85 (170)
T ss_pred cC-CCCEEEehhH
Confidence 22 2337888986
No 279
>KOG0744 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=96.22 E-value=0.014 Score=59.69 Aligned_cols=35 Identities=26% Similarity=0.336 Sum_probs=27.4
Q ss_pred cEEEEEEecCCChhHHHHHHHHHHh----hccccceeec
Q 002220 209 FRTIGIWGMGGIGKTTLAGAVFKLI----SREFEGKCFM 243 (951)
Q Consensus 209 ~~vv~I~G~gGiGKTtLA~~~~~~~----~~~f~~~~~~ 243 (951)
.|+|.++|++|.|||+|++++++++ .+.|.....+
T Consensus 177 NRliLlhGPPGTGKTSLCKaLaQkLSIR~~~~y~~~~li 215 (423)
T KOG0744|consen 177 NRLILLHGPPGTGKTSLCKALAQKLSIRTNDRYYKGQLI 215 (423)
T ss_pred eeEEEEeCCCCCChhHHHHHHHHhheeeecCccccceEE
Confidence 5899999999999999999999853 3445544433
No 280
>cd01121 Sms Sms (bacterial radA) DNA repair protein. This protein is not related to archael radA any more than is to other RecA-like NTPases. Sms has a role in recombination and recombinational repair and is responsible for the stabilization or processing of branched DNA molecules.
Probab=96.21 E-value=0.017 Score=63.23 Aligned_cols=49 Identities=27% Similarity=0.236 Sum_probs=36.5
Q ss_pred HHHHHhhccCCCCcEEEEEEecCCChhHHHHHHHHHHhhccccceeecc
Q 002220 196 QKIKSLLCIGLPDFRTIGIWGMGGIGKTTLAGAVFKLISREFEGKCFMP 244 (951)
Q Consensus 196 ~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~~~~~~~~~f~~~~~~~ 244 (951)
.++.+.|..+-..-.++.|.|.+|+|||||+.+++......-..++|+.
T Consensus 69 ~eLD~vLgGGi~~GslvLI~G~pG~GKStLllq~a~~~a~~g~~VlYvs 117 (372)
T cd01121 69 EELDRVLGGGLVPGSVILIGGDPGIGKSTLLLQVAARLAKRGGKVLYVS 117 (372)
T ss_pred HHHHHhhcCCccCCeEEEEEeCCCCCHHHHHHHHHHHHHhcCCeEEEEE
Confidence 4555666433344579999999999999999999987766545666764
No 281
>PRK04296 thymidine kinase; Provisional
Probab=96.17 E-value=0.0078 Score=59.61 Aligned_cols=111 Identities=21% Similarity=0.052 Sum_probs=57.8
Q ss_pred EEEEEEecCCChhHHHHHHHHHHhhccccceeecccccchhcCCCChHHHHHHHHHHHhcCccccCCCCChHHHHHHh--
Q 002220 210 RTIGIWGMGGIGKTTLAGAVFKLISREFEGKCFMPNVREESENGGGLVYLRDRVVSEIFQEDIKIGTPYLPDYIVERL-- 287 (951)
Q Consensus 210 ~vv~I~G~gGiGKTtLA~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~l~~~il~~l~~~~~~~~~~~~~~~l~~~l-- 287 (951)
.++.|+|..|.||||+|..++.+...+...++++. .. ... ..+.. .+.+++....... .......+.+.+
T Consensus 3 ~i~litG~~GsGKTT~~l~~~~~~~~~g~~v~i~k-~~-~d~-~~~~~----~i~~~lg~~~~~~-~~~~~~~~~~~~~~ 74 (190)
T PRK04296 3 KLEFIYGAMNSGKSTELLQRAYNYEERGMKVLVFK-PA-IDD-RYGEG----KVVSRIGLSREAI-PVSSDTDIFELIEE 74 (190)
T ss_pred EEEEEECCCCCHHHHHHHHHHHHHHHcCCeEEEEe-cc-ccc-cccCC----cEecCCCCcccce-EeCChHHHHHHHHh
Confidence 47889999999999999999988755544444331 10 000 11111 1222221110000 001112222222
Q ss_pred -cCCcEEEEEeCCCC--hHHHHHHHhccCCCCCCCEEEEEeCCchh
Q 002220 288 -NRMKVLTVLDDVNK--VRQLHYLACVLDQFGPGSRIIITTRDKRI 330 (951)
Q Consensus 288 -~~~~~LlVlDdv~~--~~~~~~l~~~~~~~~~gs~IlvTtR~~~v 330 (951)
.++.-+||+|.+.- .+++..+...+. ..|..|++|.++.+.
T Consensus 75 ~~~~~dvviIDEaq~l~~~~v~~l~~~l~--~~g~~vi~tgl~~~~ 118 (190)
T PRK04296 75 EGEKIDCVLIDEAQFLDKEQVVQLAEVLD--DLGIPVICYGLDTDF 118 (190)
T ss_pred hCCCCCEEEEEccccCCHHHHHHHHHHHH--HcCCeEEEEecCccc
Confidence 23445899999853 333444443332 468889999998543
No 282
>PF03215 Rad17: Rad17 cell cycle checkpoint protein
Probab=96.09 E-value=0.058 Score=61.67 Aligned_cols=56 Identities=25% Similarity=0.330 Sum_probs=40.5
Q ss_pred CCcccchhhHHHHHHhhcc---CCCCcEEEEEEecCCChhHHHHHHHHHHhhccccceeec
Q 002220 186 DGFVGLNSRIQKIKSLLCI---GLPDFRTIGIWGMGGIGKTTLAGAVFKLISREFEGKCFM 243 (951)
Q Consensus 186 ~~~vGr~~~~~~l~~~L~~---~~~~~~vv~I~G~gGiGKTtLA~~~~~~~~~~f~~~~~~ 243 (951)
.+++--.+-++++..||.. +....+++.++|++|+||||.++.+++.+ .|+..-|.
T Consensus 19 ~eLavhkkKv~eV~~wl~~~~~~~~~~~iLlLtGP~G~GKtttv~~La~el--g~~v~Ew~ 77 (519)
T PF03215_consen 19 DELAVHKKKVEEVRSWLEEMFSGSSPKRILLLTGPSGCGKTTTVKVLAKEL--GFEVQEWI 77 (519)
T ss_pred HHhhccHHHHHHHHHHHHHHhccCCCcceEEEECCCCCCHHHHHHHHHHHh--CCeeEEec
Confidence 3444455667888888863 23346799999999999999999999865 34444454
No 283
>PRK15115 response regulator GlrR; Provisional
Probab=96.09 E-value=1.4 Score=50.56 Aligned_cols=47 Identities=19% Similarity=0.192 Sum_probs=33.5
Q ss_pred CCcccchhhHHHHHHhhccCCCCcEEEEEEecCCChhHHHHHHHHHH
Q 002220 186 DGFVGLNSRIQKIKSLLCIGLPDFRTIGIWGMGGIGKTTLAGAVFKL 232 (951)
Q Consensus 186 ~~~vGr~~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~~~~~ 232 (951)
..++|....+.++.+....-...-..|.|.|.+|+|||++|+.+.+.
T Consensus 134 ~~lig~s~~~~~~~~~~~~~a~~~~~vli~Ge~GtGk~~lA~~ih~~ 180 (444)
T PRK15115 134 EAIVTRSPLMLRLLEQARMVAQSDVSVLINGQSGTGKEILAQAIHNA 180 (444)
T ss_pred hcccccCHHHHHHHHHHHhhccCCCeEEEEcCCcchHHHHHHHHHHh
Confidence 35788877776665544322223346779999999999999998774
No 284
>PRK12724 flagellar biosynthesis regulator FlhF; Provisional
Probab=96.08 E-value=0.13 Score=56.33 Aligned_cols=25 Identities=24% Similarity=0.162 Sum_probs=22.3
Q ss_pred cEEEEEEecCCChhHHHHHHHHHHh
Q 002220 209 FRTIGIWGMGGIGKTTLAGAVFKLI 233 (951)
Q Consensus 209 ~~vv~I~G~gGiGKTtLA~~~~~~~ 233 (951)
..+++++|++|+||||+|.+++...
T Consensus 223 ~~vi~lvGptGvGKTTtaaKLA~~~ 247 (432)
T PRK12724 223 RKVVFFVGPTGSGKTTSIAKLAAKY 247 (432)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHH
Confidence 4689999999999999999998754
No 285
>KOG0735 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=96.07 E-value=0.021 Score=64.61 Aligned_cols=161 Identities=19% Similarity=0.187 Sum_probs=82.7
Q ss_pred cEEEEEEecCCChhHHHHHHHHHHhhccccceeecccccchhcCCCChHHHHHHHHHHHhcCccccCCCCChHHHHHHhc
Q 002220 209 FRTIGIWGMGGIGKTTLAGAVFKLISREFEGKCFMPNVREESENGGGLVYLRDRVVSEIFQEDIKIGTPYLPDYIVERLN 288 (951)
Q Consensus 209 ~~vv~I~G~gGiGKTtLA~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~l~~~il~~l~~~~~~~~~~~~~~~l~~~l~ 288 (951)
..-|.|.|..|+|||+||+++++.+... ..+++..+....-....+..+++.+- ..+.+.+.
T Consensus 431 ~~~Ill~G~~GsGKT~L~kal~~~~~k~--~~~hv~~v~Cs~l~~~~~e~iQk~l~----------------~vfse~~~ 492 (952)
T KOG0735|consen 431 HGNILLNGPKGSGKTNLVKALFDYYSKD--LIAHVEIVSCSTLDGSSLEKIQKFLN----------------NVFSEALW 492 (952)
T ss_pred cccEEEeCCCCCCHhHHHHHHHHHhccc--cceEEEEEechhccchhHHHHHHHHH----------------HHHHHHHh
Confidence 4578999999999999999999976533 22333222221111223444443332 34455666
Q ss_pred CCcEEEEEeCCCCh--------HHH----HHHHhcc----CCC-CCCCE--EEEEeCCchhhh----hcC-CCccceEEc
Q 002220 289 RMKVLTVLDDVNKV--------RQL----HYLACVL----DQF-GPGSR--IIITTRDKRILD----DFG-VCDTDIYEV 344 (951)
Q Consensus 289 ~~~~LlVlDdv~~~--------~~~----~~l~~~~----~~~-~~gs~--IlvTtR~~~v~~----~~~-~~~~~~~~l 344 (951)
..+-++||||++-. .+| +.+...+ ..+ ..+.+ +|.|.....-.. ... .+ ....+
T Consensus 493 ~~PSiIvLDdld~l~~~s~~e~~q~~~~~~rla~flnqvi~~y~~~~~~ia~Iat~qe~qtl~~~L~s~~~Fq--~~~~L 570 (952)
T KOG0735|consen 493 YAPSIIVLDDLDCLASASSNENGQDGVVSERLAAFLNQVIKIYLKRNRKIAVIATGQELQTLNPLLVSPLLFQ--IVIAL 570 (952)
T ss_pred hCCcEEEEcchhhhhccCcccCCcchHHHHHHHHHHHHHHHHHHccCcEEEEEEechhhhhcChhhcCccceE--EEEec
Confidence 78899999998522 111 1111111 111 23333 444444332211 111 22 46788
Q ss_pred CCCChhhhHHHHhhhhccCCCCChhHHHHHHHHHHHcCCC-chHHHHH
Q 002220 345 NKLRFHEALVLFSNFAFKENQCPGDLLALLERVLKYANGN-PLALRVL 391 (951)
Q Consensus 345 ~~L~~~~a~~Lf~~~~~~~~~~~~~~~~~~~~i~~~~~g~-PLal~~~ 391 (951)
..+...+-.++++...-. .. .+.......-+..+|+|. |.-+.++
T Consensus 571 ~ap~~~~R~~IL~~~~s~-~~-~~~~~~dLd~ls~~TEGy~~~DL~if 616 (952)
T KOG0735|consen 571 PAPAVTRRKEILTTIFSK-NL-SDITMDDLDFLSVKTEGYLATDLVIF 616 (952)
T ss_pred CCcchhHHHHHHHHHHHh-hh-hhhhhHHHHHHHHhcCCccchhHHHH
Confidence 888888877777654421 11 111112223366777774 4444443
No 286
>cd03221 ABCF_EF-3 ABCF_EF-3 Elongation factor 3 (EF-3) is a cytosolic protein required by fungal ribosomes for in vitro protein synthesis and for in vivo growth. EF-3 stimulates the binding of the EF-1: GTP: aa-tRNA ternary complex to the ribosomal A site by facilitated release of the deacylated tRNA from the E site. The reaction requires ATP hydrolysis. EF-3 contains two ATP nucleotide binding sequence (NBS) motifs. NBSI is sufficient for the intrinsic ATPase activity. NBSII is essential for the ribosome-stimulated functions.
Probab=96.07 E-value=0.016 Score=54.43 Aligned_cols=102 Identities=20% Similarity=0.195 Sum_probs=56.0
Q ss_pred cEEEEEEecCCChhHHHHHHHHHHhhccccceeecccccchhcCCCChHHHHHHHHHHHhcCccccCCCCCh-HHHHHHh
Q 002220 209 FRTIGIWGMGGIGKTTLAGAVFKLISREFEGKCFMPNVREESENGGGLVYLRDRVVSEIFQEDIKIGTPYLP-DYIVERL 287 (951)
Q Consensus 209 ~~vv~I~G~gGiGKTtLA~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~l~~~il~~l~~~~~~~~~~~~~-~~l~~~l 287 (951)
-.+++|.|..|.|||||++.++.... ...+.+++.......- .+. .+..+.+ -.+.+.+
T Consensus 26 Ge~~~i~G~nGsGKStLl~~l~G~~~-~~~G~i~~~~~~~i~~-~~~------------------lS~G~~~rv~laral 85 (144)
T cd03221 26 GDRIGLVGRNGAGKSTLLKLIAGELE-PDEGIVTWGSTVKIGY-FEQ------------------LSGGEKMRLALAKLL 85 (144)
T ss_pred CCEEEEECCCCCCHHHHHHHHcCCCC-CCceEEEECCeEEEEE-Ecc------------------CCHHHHHHHHHHHHH
Confidence 46899999999999999999986432 2234444432111000 000 1111111 3345556
Q ss_pred cCCcEEEEEeCCC---ChHHHHHHHhccCCCCCCCEEEEEeCCchhhh
Q 002220 288 NRMKVLTVLDDVN---KVRQLHYLACVLDQFGPGSRIIITTRDKRILD 332 (951)
Q Consensus 288 ~~~~~LlVlDdv~---~~~~~~~l~~~~~~~~~gs~IlvTtR~~~v~~ 332 (951)
..++-++++|+.. |....+.+...+... +..||++|.+.....
T Consensus 86 ~~~p~illlDEP~~~LD~~~~~~l~~~l~~~--~~til~~th~~~~~~ 131 (144)
T cd03221 86 LENPNLLLLDEPTNHLDLESIEALEEALKEY--PGTVILVSHDRYFLD 131 (144)
T ss_pred hcCCCEEEEeCCccCCCHHHHHHHHHHHHHc--CCEEEEEECCHHHHH
Confidence 6677799999863 333333333333222 246888887766544
No 287
>PRK15455 PrkA family serine protein kinase; Provisional
Probab=96.06 E-value=0.0075 Score=67.81 Aligned_cols=51 Identities=25% Similarity=0.289 Sum_probs=41.9
Q ss_pred CCCcccchhhHHHHHHhhc----cCCCCcEEEEEEecCCChhHHHHHHHHHHhhc
Q 002220 185 SDGFVGLNSRIQKIKSLLC----IGLPDFRTIGIWGMGGIGKTTLAGAVFKLISR 235 (951)
Q Consensus 185 ~~~~vGr~~~~~~l~~~L~----~~~~~~~vv~I~G~gGiGKTtLA~~~~~~~~~ 235 (951)
..+++|.++.+++|.+.|. .-+...+++.++|++|+||||||+.+++-+..
T Consensus 75 F~d~yGlee~ieriv~~l~~Aa~gl~~~~~IL~LvGPpG~GKSsLa~~la~~le~ 129 (644)
T PRK15455 75 FEEFYGMEEAIEQIVSYFRHAAQGLEEKKQILYLLGPVGGGKSSLAERLKSLMER 129 (644)
T ss_pred hhcccCcHHHHHHHHHHHHHHHHhcCCCCceEEEecCCCCCchHHHHHHHHHHHh
Confidence 3468999999999999882 22345689999999999999999999985543
No 288
>PRK06067 flagellar accessory protein FlaH; Validated
Probab=96.05 E-value=0.019 Score=59.27 Aligned_cols=49 Identities=20% Similarity=0.151 Sum_probs=35.1
Q ss_pred HHHHHhhccCCCCcEEEEEEecCCChhHHHHHHHHHHhhccccceeecc
Q 002220 196 QKIKSLLCIGLPDFRTIGIWGMGGIGKTTLAGAVFKLISREFEGKCFMP 244 (951)
Q Consensus 196 ~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~~~~~~~~~f~~~~~~~ 244 (951)
..|.++|..+-+.-.++.|+|.+|+|||++|.+++.....+-..++|+.
T Consensus 12 ~~LD~~l~gG~~~g~~~~i~G~~GsGKt~l~~~~~~~~~~~g~~~~y~~ 60 (234)
T PRK06067 12 EELDRKLGGGIPFPSLILIEGDHGTGKSVLSQQFVYGALKQGKKVYVIT 60 (234)
T ss_pred HHHHHhhCCCCcCCcEEEEECCCCCChHHHHHHHHHHHHhCCCEEEEEE
Confidence 3455566444456789999999999999999999765433445566664
No 289
>COG0488 Uup ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only]
Probab=96.05 E-value=0.098 Score=59.97 Aligned_cols=59 Identities=24% Similarity=0.413 Sum_probs=37.2
Q ss_pred HHHHhcCCcEEEEEeCCC---ChHHHHHHHhccCCCCCCCEEEEEeCCchhhhhcCCCccceEEcCC
Q 002220 283 IVERLNRMKVLTVLDDVN---KVRQLHYLACVLDQFGPGSRIIITTRDKRILDDFGVCDTDIYEVNK 346 (951)
Q Consensus 283 l~~~l~~~~~LlVlDdv~---~~~~~~~l~~~~~~~~~gs~IlvTtR~~~v~~~~~~~~~~~~~l~~ 346 (951)
+...+-.++=++|||.-- |.+..+.+...+..+ +|+ ||+.|-++........ .++.+++
T Consensus 450 La~ll~~~pNvLiLDEPTNhLDi~s~~aLe~aL~~f-~Gt-vl~VSHDr~Fl~~va~---~i~~~~~ 511 (530)
T COG0488 450 LAKLLLQPPNLLLLDEPTNHLDIESLEALEEALLDF-EGT-VLLVSHDRYFLDRVAT---RIWLVED 511 (530)
T ss_pred HHHHhccCCCEEEEcCCCccCCHHHHHHHHHHHHhC-CCe-EEEEeCCHHHHHhhcc---eEEEEcC
Confidence 344556788899999653 223344444444332 354 8888999988877653 6777765
No 290
>COG0464 SpoVK ATPases of the AAA+ class [Posttranslational modification, protein turnover, chaperones]
Probab=96.05 E-value=0.099 Score=60.70 Aligned_cols=153 Identities=20% Similarity=0.165 Sum_probs=87.4
Q ss_pred CCcccchhhHHHHHHhhc---c--------CCCCcEEEEEEecCCChhHHHHHHHHHHhhccccceeecccccchhcCCC
Q 002220 186 DGFVGLNSRIQKIKSLLC---I--------GLPDFRTIGIWGMGGIGKTTLAGAVFKLISREFEGKCFMPNVREESENGG 254 (951)
Q Consensus 186 ~~~vGr~~~~~~l~~~L~---~--------~~~~~~vv~I~G~gGiGKTtLA~~~~~~~~~~f~~~~~~~~~~~~~~~~~ 254 (951)
....|.+...+.+.+... . +-...+.+.++|++|.|||.||+++++..+..|-.+..-..+... -.
T Consensus 242 ~diggl~~~k~~l~e~v~~~~~~~e~~~~~~~~~~~giLl~GpPGtGKT~lAkava~~~~~~fi~v~~~~l~sk~---vG 318 (494)
T COG0464 242 DDIGGLEEAKEELKEAIETPLKRPELFRKLGLRPPKGVLLYGPPGTGKTLLAKAVALESRSRFISVKGSELLSKW---VG 318 (494)
T ss_pred ehhhcHHHHHHHHHHHHHhHhhChHHHHhcCCCCCCeeEEECCCCCCHHHHHHHHHhhCCCeEEEeeCHHHhccc---cc
Confidence 345566666666555442 0 123466899999999999999999999766665433221111000 00
Q ss_pred ChHHHHHHHHHHHhcCccccCCCCChHHHHHHhcCCcEEEEEeCCCCh-------------HHHHHHHhccCCC--CCCC
Q 002220 255 GLVYLRDRVVSEIFQEDIKIGTPYLPDYIVERLNRMKVLTVLDDVNKV-------------RQLHYLACVLDQF--GPGS 319 (951)
Q Consensus 255 ~~~~l~~~il~~l~~~~~~~~~~~~~~~l~~~l~~~~~LlVlDdv~~~-------------~~~~~l~~~~~~~--~~gs 319 (951)
......+ +......+..+..|.+|.++.. .....++..+... ..+.
T Consensus 319 esek~ir-------------------~~F~~A~~~~p~iiFiDEiDs~~~~r~~~~~~~~~r~~~~lL~~~d~~e~~~~v 379 (494)
T COG0464 319 ESEKNIR-------------------ELFEKARKLAPSIIFIDEIDSLASGRGPSEDGSGRRVVGQLLTELDGIEKAEGV 379 (494)
T ss_pred hHHHHHH-------------------HHHHHHHcCCCcEEEEEchhhhhccCCCCCchHHHHHHHHHHHHhcCCCccCce
Confidence 0111111 2222333567899999998422 1233344444322 2344
Q ss_pred EEEEEeCCchhhhhc-----CCCccceEEcCCCChhhhHHHHhhhhcc
Q 002220 320 RIIITTRDKRILDDF-----GVCDTDIYEVNKLRFHEALVLFSNFAFK 362 (951)
Q Consensus 320 ~IlvTtR~~~v~~~~-----~~~~~~~~~l~~L~~~~a~~Lf~~~~~~ 362 (951)
.||-||-........ ..+ ..+.++.-+.++..+.|..+.-.
T Consensus 380 ~vi~aTN~p~~ld~a~lR~gRfd--~~i~v~~pd~~~r~~i~~~~~~~ 425 (494)
T COG0464 380 LVIAATNRPDDLDPALLRPGRFD--RLIYVPLPDLEERLEIFKIHLRD 425 (494)
T ss_pred EEEecCCCccccCHhhcccCccc--eEeecCCCCHHHHHHHHHHHhcc
Confidence 455555544433321 233 68999999999999999988843
No 291
>COG4088 Predicted nucleotide kinase [Nucleotide transport and metabolism]
Probab=96.03 E-value=0.05 Score=52.24 Aligned_cols=30 Identities=33% Similarity=0.308 Sum_probs=24.5
Q ss_pred EEEEEEecCCChhHHHHHHHHHHhhccccc
Q 002220 210 RTIGIWGMGGIGKTTLAGAVFKLISREFEG 239 (951)
Q Consensus 210 ~vv~I~G~gGiGKTtLA~~~~~~~~~~f~~ 239 (951)
+.|.+.|++|+||||+|++++..+++.-..
T Consensus 2 pLiIlTGyPgsGKTtfakeLak~L~~~i~~ 31 (261)
T COG4088 2 PLIILTGYPGSGKTTFAKELAKELRQEIWR 31 (261)
T ss_pred ceEEEecCCCCCchHHHHHHHHHHHHhhhh
Confidence 467899999999999999999876655443
No 292
>PRK10733 hflB ATP-dependent metalloprotease; Reviewed
Probab=96.02 E-value=0.046 Score=64.97 Aligned_cols=128 Identities=17% Similarity=0.171 Sum_probs=69.5
Q ss_pred EEEEEEecCCChhHHHHHHHHHHhhccccceeecccccchhcCCCChHHHHHHHHHHHhcCccccCCCCChHHHHHHhcC
Q 002220 210 RTIGIWGMGGIGKTTLAGAVFKLISREFEGKCFMPNVREESENGGGLVYLRDRVVSEIFQEDIKIGTPYLPDYIVERLNR 289 (951)
Q Consensus 210 ~vv~I~G~gGiGKTtLA~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~l~~~il~~l~~~~~~~~~~~~~~~l~~~l~~ 289 (951)
+-|.|+|++|.|||++|+.++......|- .+. .. .+.... .+. ......+.+......
T Consensus 186 ~gill~G~~G~GKt~~~~~~a~~~~~~f~---~is-~~----------~~~~~~----~g~----~~~~~~~~f~~a~~~ 243 (644)
T PRK10733 186 KGVLMVGPPGTGKTLLAKAIAGEAKVPFF---TIS-GS----------DFVEMF----VGV----GASRVRDMFEQAKKA 243 (644)
T ss_pred CcEEEECCCCCCHHHHHHHHHHHcCCCEE---EEe-hH----------HhHHhh----hcc----cHHHHHHHHHHHHhc
Confidence 44899999999999999999986654432 111 00 000000 000 000000122222234
Q ss_pred CcEEEEEeCCCChH----------------HHHHHHhccCCC--CCCCEEEEEeCCchhhhhc-----CCCccceEEcCC
Q 002220 290 MKVLTVLDDVNKVR----------------QLHYLACVLDQF--GPGSRIIITTRDKRILDDF-----GVCDTDIYEVNK 346 (951)
Q Consensus 290 ~~~LlVlDdv~~~~----------------~~~~l~~~~~~~--~~gs~IlvTtR~~~v~~~~-----~~~~~~~~~l~~ 346 (951)
.+.+|++|+++... .+..++..+..+ ..+.-+|.||...+..... ..+ +.+.++.
T Consensus 244 ~P~IifIDEiD~l~~~r~~~~~g~~~~~~~~ln~lL~~mdg~~~~~~vivIaaTN~p~~lD~Al~RpgRfd--r~i~v~~ 321 (644)
T PRK10733 244 APCIIFIDEIDAVGRQRGAGLGGGHDEREQTLNQMLVEMDGFEGNEGIIVIAATNRPDVLDPALLRPGRFD--RQVVVGL 321 (644)
T ss_pred CCcEEEehhHhhhhhccCCCCCCCchHHHHHHHHHHHhhhcccCCCCeeEEEecCChhhcCHHHhCCcccc--eEEEcCC
Confidence 67899999986431 122333223222 2344556677766543321 233 6788988
Q ss_pred CChhhhHHHHhhhhc
Q 002220 347 LRFHEALVLFSNFAF 361 (951)
Q Consensus 347 L~~~~a~~Lf~~~~~ 361 (951)
.+.++-.+++..+..
T Consensus 322 Pd~~~R~~Il~~~~~ 336 (644)
T PRK10733 322 PDVRGREQILKVHMR 336 (644)
T ss_pred CCHHHHHHHHHHHhh
Confidence 888888888887764
No 293
>TIGR01359 UMP_CMP_kin_fam UMP-CMP kinase family. This subfamily of the adenylate kinase superfamily contains examples of UMP-CMP kinase, as well as others proteins with unknown specificity, some currently designated adenylate kinase. All known members are eukaryotic.
Probab=96.01 E-value=0.032 Score=55.10 Aligned_cols=23 Identities=22% Similarity=0.280 Sum_probs=20.8
Q ss_pred EEEEEecCCChhHHHHHHHHHHh
Q 002220 211 TIGIWGMGGIGKTTLAGAVFKLI 233 (951)
Q Consensus 211 vv~I~G~gGiGKTtLA~~~~~~~ 233 (951)
+|.|.|++|+||||+|+.++.++
T Consensus 1 ~i~i~G~pGsGKst~a~~la~~~ 23 (183)
T TIGR01359 1 VVFVLGGPGSGKGTQCAKIVENF 23 (183)
T ss_pred CEEEECCCCCCHHHHHHHHHHHc
Confidence 57899999999999999998865
No 294
>cd01393 recA_like RecA is a bacterial enzyme which has roles in homologous recombination, DNA repair, and the induction of the SOS response. RecA couples ATP hydrolysis to DNA strand exchange. While prokaryotes have a single RecA protein, eukaryotes have multiple RecA homologs such as Rad51, DMC1 and Rad55/57. Archaea have the RecA-like homologs radA and radB.
Probab=96.01 E-value=0.025 Score=58.12 Aligned_cols=48 Identities=25% Similarity=0.230 Sum_probs=35.2
Q ss_pred HHHHhhccCCCCcEEEEEEecCCChhHHHHHHHHHHhhccc------cceeecc
Q 002220 197 KIKSLLCIGLPDFRTIGIWGMGGIGKTTLAGAVFKLISREF------EGKCFMP 244 (951)
Q Consensus 197 ~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~~~~~~~~~f------~~~~~~~ 244 (951)
.|.++|..+-..-.++.|+|.+|.|||+||.+++....... ..++|+.
T Consensus 7 ~lD~~l~GG~~~g~v~~I~G~~GsGKT~l~~~ia~~~~~~~~~~g~~~~v~yi~ 60 (226)
T cd01393 7 ALDELLGGGIPTGRITEIFGEFGSGKTQLCLQLAVEAQLPGELGGLEGKVVYID 60 (226)
T ss_pred HHHHHhCCCCcCCcEEEEeCCCCCChhHHHHHHHHHhhcccccCCCcceEEEEe
Confidence 45555544445568999999999999999999987654444 4567775
No 295
>cd03214 ABC_Iron-Siderophores_B12_Hemin ABC transporters, involved in the uptake of siderophores, heme, and vitamin B12, are widely conserved in bacteria and archaea. Only very few species lack representatives of the siderophore family transporters. The E. coli BtuCD protein is an ABC transporter mediating vitamin B12 uptake. The two ATP-binding cassettes (BtuD) are in close contact with each other, as are the two membrane-spanning subunits (BtuC); this arrangement is distinct from that observed for the E. coli lipid flippase MsbA. The BtuC subunits provide 20 transmembrane helices grouped around a translocation pathway that is closed to the cytoplasm by a gate region, whereas the dimer arrangement of the BtuD subunits resembles the ATP-bound form of the Rad50 DNA repair enzyme. A prominent cytoplasmic loop of BtuC forms the contact region with the ATP-binding cassette and represent a conserved motif among the ABC transporters.
Probab=96.01 E-value=0.028 Score=55.28 Aligned_cols=120 Identities=15% Similarity=0.183 Sum_probs=61.8
Q ss_pred cEEEEEEecCCChhHHHHHHHHHHhhccccceeecccccchhcCCCChHHHHH------HHHHHHhcCc------cccCC
Q 002220 209 FRTIGIWGMGGIGKTTLAGAVFKLISREFEGKCFMPNVREESENGGGLVYLRD------RVVSEIFQED------IKIGT 276 (951)
Q Consensus 209 ~~vv~I~G~gGiGKTtLA~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~l~~------~il~~l~~~~------~~~~~ 276 (951)
-.+++|.|..|.|||||++.++-... ...+.+++.... .. ......... +++..+.-.. ...+.
T Consensus 25 G~~~~l~G~nGsGKStLl~~i~G~~~-~~~G~v~~~g~~-~~--~~~~~~~~~~i~~~~q~l~~~gl~~~~~~~~~~LS~ 100 (180)
T cd03214 25 GEIVGILGPNGAGKSTLLKTLAGLLK-PSSGEILLDGKD-LA--SLSPKELARKIAYVPQALELLGLAHLADRPFNELSG 100 (180)
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCCC-CCCcEEEECCEE-CC--cCCHHHHHHHHhHHHHHHHHcCCHhHhcCCcccCCH
Confidence 46899999999999999999986443 234444443211 00 001111111 1222221111 01111
Q ss_pred CCCh-HHHHHHhcCCcEEEEEeCCC---ChHHHHHHHhccCCC-CC-CCEEEEEeCCchhhh
Q 002220 277 PYLP-DYIVERLNRMKVLTVLDDVN---KVRQLHYLACVLDQF-GP-GSRIIITTRDKRILD 332 (951)
Q Consensus 277 ~~~~-~~l~~~l~~~~~LlVlDdv~---~~~~~~~l~~~~~~~-~~-gs~IlvTtR~~~v~~ 332 (951)
.+.+ -.+.+.+...+-++++|+.- |....+.+...+... .. |..||++|.+.....
T Consensus 101 G~~qrl~laral~~~p~llllDEP~~~LD~~~~~~~~~~l~~~~~~~~~tiii~sh~~~~~~ 162 (180)
T cd03214 101 GERQRVLLARALAQEPPILLLDEPTSHLDIAHQIELLELLRRLARERGKTVVMVLHDLNLAA 162 (180)
T ss_pred HHHHHHHHHHHHhcCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHH
Confidence 1112 44556667788899999863 333333333332221 22 667888888776543
No 296
>KOG2123 consensus Uncharacterized conserved protein [Function unknown]
Probab=95.99 E-value=0.0003 Score=69.88 Aligned_cols=55 Identities=18% Similarity=0.051 Sum_probs=28.9
Q ss_pred cceEEEeecCCCCCCCCccccccceecccCCcccccccc--ccccccccceeccCCC
Q 002220 587 ELRYLYWHEYPLKTLPLDFDLENLIALHLPYSEVEQIWK--GQKEAFKLKFIDLHDS 641 (951)
Q Consensus 587 ~L~~L~l~~~~l~~lp~~~~l~~L~~L~L~~~~i~~l~~--~~~~l~~L~~L~L~~~ 641 (951)
.|+.|.|+-|.++++.+...+++|++|+|..|.|..+-+ .++++++|+.|-|..|
T Consensus 42 ~lEVLsLSvNkIssL~pl~rCtrLkElYLRkN~I~sldEL~YLknlpsLr~LWL~EN 98 (388)
T KOG2123|consen 42 LLEVLSLSVNKISSLAPLQRCTRLKELYLRKNCIESLDELEYLKNLPSLRTLWLDEN 98 (388)
T ss_pred cceeEEeeccccccchhHHHHHHHHHHHHHhcccccHHHHHHHhcCchhhhHhhccC
Confidence 455555665655555555555555555555555554432 1344444444444444
No 297
>PRK12723 flagellar biosynthesis regulator FlhF; Provisional
Probab=95.98 E-value=0.11 Score=57.21 Aligned_cols=27 Identities=26% Similarity=0.320 Sum_probs=23.8
Q ss_pred CcEEEEEEecCCChhHHHHHHHHHHhh
Q 002220 208 DFRTIGIWGMGGIGKTTLAGAVFKLIS 234 (951)
Q Consensus 208 ~~~vv~I~G~gGiGKTtLA~~~~~~~~ 234 (951)
..++|.++|+.|+||||.+..++..+.
T Consensus 173 ~~~vi~lvGptGvGKTTT~aKLA~~~~ 199 (388)
T PRK12723 173 KKRVFILVGPTGVGKTTTIAKLAAIYG 199 (388)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHH
Confidence 457999999999999999999998654
No 298
>PRK06762 hypothetical protein; Provisional
Probab=95.98 E-value=0.032 Score=54.03 Aligned_cols=25 Identities=36% Similarity=0.368 Sum_probs=22.6
Q ss_pred cEEEEEEecCCChhHHHHHHHHHHh
Q 002220 209 FRTIGIWGMGGIGKTTLAGAVFKLI 233 (951)
Q Consensus 209 ~~vv~I~G~gGiGKTtLA~~~~~~~ 233 (951)
.++|.|.|++|.||||+|+.+++.+
T Consensus 2 ~~li~i~G~~GsGKST~A~~L~~~l 26 (166)
T PRK06762 2 TTLIIIRGNSGSGKTTIAKQLQERL 26 (166)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHh
Confidence 3689999999999999999999876
No 299
>TIGR01420 pilT_fam pilus retraction protein PilT. This model represents the PilT subfamily of proteins related to GspE, a protein involved in type II secretion (also called the General Secretion Pathway). PilT is an apparent cytosolic ATPase associated with type IV pilus systems. It is not required for pilin biogenesis, but is required for twitching motility and social gliding behaviors, shown in some species, powered by pilus retraction. Members of this family may be found in some species that type IV pili but have related structures for DNA uptake and natural transformation.
Probab=95.97 E-value=0.02 Score=62.55 Aligned_cols=110 Identities=15% Similarity=0.164 Sum_probs=63.8
Q ss_pred cEEEEEEecCCChhHHHHHHHHHHhhccccceeec-ccccchhcCCCChHHHHHHHHHHHhcCccccCCCCChHHHHHHh
Q 002220 209 FRTIGIWGMGGIGKTTLAGAVFKLISREFEGKCFM-PNVREESENGGGLVYLRDRVVSEIFQEDIKIGTPYLPDYIVERL 287 (951)
Q Consensus 209 ~~vv~I~G~gGiGKTtLA~~~~~~~~~~f~~~~~~-~~~~~~~~~~~~~~~l~~~il~~l~~~~~~~~~~~~~~~l~~~l 287 (951)
...|.|.|+.|.||||+++.+...+.......++. .+..+. ........+.....+.......+.++..+
T Consensus 122 ~g~ili~G~tGSGKTT~l~al~~~i~~~~~~~i~tiEdp~E~---------~~~~~~~~i~q~evg~~~~~~~~~l~~~l 192 (343)
T TIGR01420 122 RGLILVTGPTGSGKSTTLASMIDYINKNAAGHIITIEDPIEY---------VHRNKRSLINQREVGLDTLSFANALRAAL 192 (343)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHhhCcCCCCEEEEEcCChhh---------hccCccceEEccccCCCCcCHHHHHHHhh
Confidence 36899999999999999999988766554444443 211111 00000000001111111111227788888
Q ss_pred cCCcEEEEEeCCCChHHHHHHHhccCCCCCCCEEEEEeCCchh
Q 002220 288 NRMKVLTVLDDVNKVRQLHYLACVLDQFGPGSRIIITTRDKRI 330 (951)
Q Consensus 288 ~~~~~LlVlDdv~~~~~~~~l~~~~~~~~~gs~IlvTtR~~~v 330 (951)
+..+=.|++|.+.+.+.+....... ..|..|+.|.-....
T Consensus 193 r~~pd~i~vgEird~~~~~~~l~aa---~tGh~v~~T~Ha~~~ 232 (343)
T TIGR01420 193 REDPDVILIGEMRDLETVELALTAA---ETGHLVFGTLHTNSA 232 (343)
T ss_pred ccCCCEEEEeCCCCHHHHHHHHHHH---HcCCcEEEEEcCCCH
Confidence 9999999999999888766533322 345556666654444
No 300
>cd03223 ABCD_peroxisomal_ALDP Peroxisomal ATP-binding cassette transporter (Pat) is involved in the import of very long-chain fatty acids (VLCFA) into the peroxisome. The peroxisomal membrane forms a permeability barrier for a wide variety of metabolites required for and formed during fatty acid beta-oxidation. To communicate with the cytoplasm and mitochondria, peroxisomes need dedicated proteins to transport such hydrophilic molecules across their membranes. X-linked adrenoleukodystrophy (X-ALD) is caused by mutations in the ALD gene, which encodes ALDP (adrenoleukodystrophy protein ), a peroxisomal integral membrane protein that is a member of the ATP-binding cassette (ABC) transporter protein family. The disease is characterized by a striking and unpredictable variation in phenotypic expression. Phenotypes include the rapidly progressive childhood cerebral form (CCALD), the milder adult form, adrenomyeloneuropathy (AMN), and variants without neurologic involvement (i.e. asympt
Probab=95.96 E-value=0.023 Score=55.01 Aligned_cols=118 Identities=19% Similarity=0.137 Sum_probs=58.5
Q ss_pred cEEEEEEecCCChhHHHHHHHHHHhhccccceeeccc---ccchhcCCC-ChHHHHHHHHHHHhcCccccCCCCCh-HHH
Q 002220 209 FRTIGIWGMGGIGKTTLAGAVFKLISREFEGKCFMPN---VREESENGG-GLVYLRDRVVSEIFQEDIKIGTPYLP-DYI 283 (951)
Q Consensus 209 ~~vv~I~G~gGiGKTtLA~~~~~~~~~~f~~~~~~~~---~~~~~~~~~-~~~~l~~~il~~l~~~~~~~~~~~~~-~~l 283 (951)
-.+++|.|..|.|||||++.++...... .+.+++.. +.-..+... .-..+.+.+... .....+..+.+ -.+
T Consensus 27 Ge~~~i~G~nGsGKSTLl~~l~G~~~~~-~G~i~~~~~~~i~~~~q~~~~~~~tv~~nl~~~---~~~~LS~G~~~rv~l 102 (166)
T cd03223 27 GDRLLITGPSGTGKSSLFRALAGLWPWG-SGRIGMPEGEDLLFLPQRPYLPLGTLREQLIYP---WDDVLSGGEQQRLAF 102 (166)
T ss_pred CCEEEEECCCCCCHHHHHHHHhcCCCCC-CceEEECCCceEEEECCCCccccccHHHHhhcc---CCCCCCHHHHHHHHH
Confidence 4589999999999999999998643321 22222211 000011010 001222222110 11111222222 445
Q ss_pred HHHhcCCcEEEEEeCCC---ChHHHHHHHhccCCCCCCCEEEEEeCCchhhh
Q 002220 284 VERLNRMKVLTVLDDVN---KVRQLHYLACVLDQFGPGSRIIITTRDKRILD 332 (951)
Q Consensus 284 ~~~l~~~~~LlVlDdv~---~~~~~~~l~~~~~~~~~gs~IlvTtR~~~v~~ 332 (951)
.+.+..++=++++|+-- |....+.+...+... +..||++|.+.....
T Consensus 103 aral~~~p~~lllDEPt~~LD~~~~~~l~~~l~~~--~~tiiivsh~~~~~~ 152 (166)
T cd03223 103 ARLLLHKPKFVFLDEATSALDEESEDRLYQLLKEL--GITVISVGHRPSLWK 152 (166)
T ss_pred HHHHHcCCCEEEEECCccccCHHHHHHHHHHHHHh--CCEEEEEeCChhHHh
Confidence 56666778889999863 223233333332222 356888888776543
No 301
>COG4608 AppF ABC-type oligopeptide transport system, ATPase component [Amino acid transport and metabolism]
Probab=95.93 E-value=0.031 Score=56.74 Aligned_cols=124 Identities=17% Similarity=0.112 Sum_probs=69.6
Q ss_pred CcEEEEEEecCCChhHHHHHHHHHHhhccccceeeccc-ccchhcCCCChHHHHHHHHHHHhcCc-------cccCCCCC
Q 002220 208 DFRTIGIWGMGGIGKTTLAGAVFKLISREFEGKCFMPN-VREESENGGGLVYLRDRVVSEIFQED-------IKIGTPYL 279 (951)
Q Consensus 208 ~~~vv~I~G~gGiGKTtLA~~~~~~~~~~f~~~~~~~~-~~~~~~~~~~~~~l~~~il~~l~~~~-------~~~~~~~~ 279 (951)
+-.+++|+|.+|.||||+|+.+..-.......+.|-.. +.... ..........++...+... ...+..+.
T Consensus 38 ~ge~~glVGESG~GKSTlgr~i~~L~~pt~G~i~f~g~~i~~~~--~~~~~~~v~elL~~Vgl~~~~~~ryPhelSGGQr 115 (268)
T COG4608 38 EGETLGLVGESGCGKSTLGRLILGLEEPTSGEILFEGKDITKLS--KEERRERVLELLEKVGLPEEFLYRYPHELSGGQR 115 (268)
T ss_pred CCCEEEEEecCCCCHHHHHHHHHcCcCCCCceEEEcCcchhhcc--hhHHHHHHHHHHHHhCCCHHHhhcCCcccCchhh
Confidence 34689999999999999999998865544444444210 10000 1112222333444333211 12233344
Q ss_pred h-HHHHHHhcCCcEEEEEeCCCCh------HHHHHHHhccCCCCCCCEEEEEeCCchhhhhc
Q 002220 280 P-DYIVERLNRMKVLTVLDDVNKV------RQLHYLACVLDQFGPGSRIIITTRDKRILDDF 334 (951)
Q Consensus 280 ~-~~l~~~l~~~~~LlVlDdv~~~------~~~~~l~~~~~~~~~gs~IlvTtR~~~v~~~~ 334 (951)
+ -.+.+.+.-++-++|.|..-+. .+.-.++..+.. ..|-..+..|-+-.+...+
T Consensus 116 QRi~IARALal~P~liV~DEpvSaLDvSiqaqIlnLL~dlq~-~~~lt~lFIsHDL~vv~~i 176 (268)
T COG4608 116 QRIGIARALALNPKLIVADEPVSALDVSVQAQILNLLKDLQE-ELGLTYLFISHDLSVVRYI 176 (268)
T ss_pred hhHHHHHHHhhCCcEEEecCchhhcchhHHHHHHHHHHHHHH-HhCCeEEEEEEEHHhhhhh
Confidence 4 6677888889999999975322 333333333322 2355677777777766654
No 302
>KOG1051 consensus Chaperone HSP104 and related ATP-dependent Clp proteases [Posttranslational modification, protein turnover, chaperones]
Probab=95.93 E-value=0.056 Score=64.51 Aligned_cols=105 Identities=15% Similarity=0.175 Sum_probs=68.5
Q ss_pred CCcccchhhHHHHHHhhccCC------CCcEEEEEEecCCChhHHHHHHHHHHhhccccceeecccccchhcCCCChHHH
Q 002220 186 DGFVGLNSRIQKIKSLLCIGL------PDFRTIGIWGMGGIGKTTLAGAVFKLISREFEGKCFMPNVREESENGGGLVYL 259 (951)
Q Consensus 186 ~~~vGr~~~~~~l~~~L~~~~------~~~~vv~I~G~gGiGKTtLA~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~l 259 (951)
..++|-++.+..|.+.+.... .....+.+.|+.|+|||-||++++.-+-+..+..+-++ +...
T Consensus 562 ~~V~gQ~eAv~aIa~AI~~sr~gl~~~~~~awflflGpdgvGKt~lAkaLA~~~Fgse~~~IriD-----------mse~ 630 (898)
T KOG1051|consen 562 ERVIGQDEAVAAIAAAIRRSRAGLKDPNPDAWFLFLGPDGVGKTELAKALAEYVFGSEENFIRLD-----------MSEF 630 (898)
T ss_pred hhccchHHHHHHHHHHHHhhhcccCCCCCCeEEEEECCCchhHHHHHHHHHHHHcCCccceEEec-----------hhhh
Confidence 356777877887777775221 14567889999999999999999987755544444332 2222
Q ss_pred HHHHHHHHhcCccccCCCCChHHHHHHhcCCcE-EEEEeCCCChH
Q 002220 260 RDRVVSEIFQEDIKIGTPYLPDYIVERLNRMKV-LTVLDDVNKVR 303 (951)
Q Consensus 260 ~~~il~~l~~~~~~~~~~~~~~~l~~~l~~~~~-LlVlDdv~~~~ 303 (951)
.+ .+.+.+.............+.+.++++++ +|.||||+..+
T Consensus 631 ~e--vskligsp~gyvG~e~gg~LteavrrrP~sVVLfdeIEkAh 673 (898)
T KOG1051|consen 631 QE--VSKLIGSPPGYVGKEEGGQLTEAVKRRPYSVVLFEEIEKAH 673 (898)
T ss_pred hh--hhhccCCCcccccchhHHHHHHHHhcCCceEEEEechhhcC
Confidence 22 33444443333334444788889988886 55679998554
No 303
>COG0542 clpA ATP-binding subunits of Clp protease and DnaK/DnaJ chaperones [Posttranslational modification, protein turnover, chaperones]
Probab=95.93 E-value=0.016 Score=67.91 Aligned_cols=48 Identities=21% Similarity=0.306 Sum_probs=38.7
Q ss_pred CCCcccchhhHHHHHHhhccCCCCcEEEEEEecCCChhHHHHHHHHHHhh
Q 002220 185 SDGFVGLNSRIQKIKSLLCIGLPDFRTIGIWGMGGIGKTTLAGAVFKLIS 234 (951)
Q Consensus 185 ~~~~vGr~~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~~~~~~~ 234 (951)
-+.++|||+|+.++.+.|.....+.. .++|.+|+|||++|.-++.++.
T Consensus 169 lDPvIGRd~EI~r~iqIL~RR~KNNP--vLiGEpGVGKTAIvEGLA~rIv 216 (786)
T COG0542 169 LDPVIGRDEEIRRTIQILSRRTKNNP--VLVGEPGVGKTAIVEGLAQRIV 216 (786)
T ss_pred CCCCcChHHHHHHHHHHHhccCCCCC--eEecCCCCCHHHHHHHHHHHHh
Confidence 35689999999999999974433333 4689999999999999998764
No 304
>PRK14722 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=95.92 E-value=0.064 Score=58.37 Aligned_cols=29 Identities=21% Similarity=0.201 Sum_probs=24.7
Q ss_pred CcEEEEEEecCCChhHHHHHHHHHHhhcc
Q 002220 208 DFRTIGIWGMGGIGKTTLAGAVFKLISRE 236 (951)
Q Consensus 208 ~~~vv~I~G~gGiGKTtLA~~~~~~~~~~ 236 (951)
...+++++|+.|+||||++.+++.+....
T Consensus 136 ~g~ii~lvGptGvGKTTtiakLA~~~~~~ 164 (374)
T PRK14722 136 RGGVFALMGPTGVGKTTTTAKLAARCVMR 164 (374)
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHHHHh
Confidence 35799999999999999999999875444
No 305
>PF01583 APS_kinase: Adenylylsulphate kinase; InterPro: IPR002891 Protein phosphorylation, which plays a key role in most cellular activities, is a reversible process mediated by protein kinases and phosphoprotein phosphatases. Protein kinases catalyse the transfer of the gamma phosphate from nucleotide triphosphates (often ATP) to one or more amino acid residues in a protein substrate side chain, resulting in a conformational change affecting protein function. Phosphoprotein phosphatases catalyse the reverse process. Protein kinases fall into three broad classes, characterised with respect to substrate specificity []: Serine/threonine-protein kinases Tyrosine-protein kinases Dual specific protein kinases (e.g. MEK - phosphorylates both Thr and Tyr on target proteins) Protein kinase function has been evolutionarily conserved from Escherichia coli to human []. Protein kinases play a role in a multitude of cellular processes, including division, proliferation, apoptosis, and differentiation []. Phosphorylation usually results in a functional change of the target protein by changing enzyme activity, cellular location, or association with other proteins. The catalytic subunits of protein kinases are highly conserved, and several structures have been solved [], leading to large screens to develop kinase-specific inhibitors for the treatments of a number of diseases []. This domain contains an ATP binding P-loop motif [].; GO: 0005524 ATP binding, 0016301 kinase activity, 0016772 transferase activity, transferring phosphorus-containing groups, 0000103 sulfate assimilation; PDB: 1M7H_B 1M7G_B 3CR7_B 1D6J_A 2OFW_G 1X6V_B 1XNJ_A 1XJQ_B 2PEY_A 2PEZ_B ....
Probab=95.91 E-value=0.0094 Score=55.93 Aligned_cols=36 Identities=28% Similarity=0.180 Sum_probs=29.3
Q ss_pred cEEEEEEecCCChhHHHHHHHHHHhhccccceeecc
Q 002220 209 FRTIGIWGMGGIGKTTLAGAVFKLISREFEGKCFMP 244 (951)
Q Consensus 209 ~~vv~I~G~gGiGKTtLA~~~~~~~~~~f~~~~~~~ 244 (951)
..+|.|+|.+|.||||||+++.+++...-..+.+++
T Consensus 2 g~vIwltGlsGsGKtTlA~~L~~~L~~~g~~~~~LD 37 (156)
T PF01583_consen 2 GFVIWLTGLSGSGKTTLARALERRLFARGIKVYLLD 37 (156)
T ss_dssp -EEEEEESSTTSSHHHHHHHHHHHHHHTTS-EEEEE
T ss_pred CEEEEEECCCCCCHHHHHHHHHHHHHHcCCcEEEec
Confidence 368999999999999999999998877766666653
No 306
>PF07726 AAA_3: ATPase family associated with various cellular activities (AAA); InterPro: IPR011703 This entry includes some of the AAA proteins not detected by the IPR003959 from INTERPRO model. AAA ATPases form a large, functionally diverse protein family belonging to the AAA+ superfamily of ring-shaped P-loop NTPases, which exert their activity through the energy-dependent unfolding of macromolecules. AAA ATPases contain a P-loop NTPase domain, which is the most abundant class of NTP-binding protein fold, and is found throughout all kingdoms of life []. P-loop NTPase domains act to hydrolyse the beta-gamma phosphate bond of bound nucleoside triphosphate. There are two classes of P-loop domains: the KG (kinase-GTPase) division, and the ASCE division, the latter including the AAA+ group as well as several other ATPases. There are at least six major clades of AAA domains (metalloproteases, meiotic proteins, D1 and D2 domains of ATPases with two AAA domains, proteasome subunits, and BSC1), as well as several minor clades, some of which consist of hypothetical proteins []. The domain organisation of AAA ATPases consists of a non-ATPase N-terminal domain that acts in substrate recognition, followed by one or two AAA domains (D1 and D2), one of which may be degenerate.; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 2R44_A.
Probab=95.91 E-value=0.0053 Score=54.79 Aligned_cols=31 Identities=35% Similarity=0.506 Sum_probs=21.8
Q ss_pred EEEEecCCChhHHHHHHHHHHhhccccceee
Q 002220 212 IGIWGMGGIGKTTLAGAVFKLISREFEGKCF 242 (951)
Q Consensus 212 v~I~G~gGiGKTtLA~~~~~~~~~~f~~~~~ 242 (951)
|.|+|.+|+||||+|+.++..+...|..+-+
T Consensus 2 vLleg~PG~GKT~la~~lA~~~~~~f~RIq~ 32 (131)
T PF07726_consen 2 VLLEGVPGVGKTTLAKALARSLGLSFKRIQF 32 (131)
T ss_dssp EEEES---HHHHHHHHHHHHHTT--EEEEE-
T ss_pred EeeECCCccHHHHHHHHHHHHcCCceeEEEe
Confidence 6799999999999999999988888875444
No 307
>cd00983 recA RecA is a bacterial enzyme which has roles in homologous recombination, DNA repair, and the induction of the SOS response. RecA couples ATP hydrolysis to DNA strand exchange.
Probab=95.85 E-value=0.016 Score=61.62 Aligned_cols=49 Identities=29% Similarity=0.253 Sum_probs=36.8
Q ss_pred HHHHHhhc-cCCCCcEEEEEEecCCChhHHHHHHHHHHhhccccceeecc
Q 002220 196 QKIKSLLC-IGLPDFRTIGIWGMGGIGKTTLAGAVFKLISREFEGKCFMP 244 (951)
Q Consensus 196 ~~l~~~L~-~~~~~~~vv~I~G~gGiGKTtLA~~~~~~~~~~f~~~~~~~ 244 (951)
..|..+|. .+=+.-+++-|+|++|+||||||.+++......-..++|++
T Consensus 41 ~~LD~~Lg~GGlp~G~iteI~Gp~GsGKTtLal~~~~~~~~~g~~~vyId 90 (325)
T cd00983 41 LSLDIALGIGGYPKGRIIEIYGPESSGKTTLALHAIAEAQKLGGTVAFID 90 (325)
T ss_pred HHHHHHhcCCCccCCeEEEEECCCCCCHHHHHHHHHHHHHHcCCCEEEEC
Confidence 34555664 33355689999999999999999998876655556677875
No 308
>KOG0731 consensus AAA+-type ATPase containing the peptidase M41 domain [Posttranslational modification, protein turnover, chaperones]
Probab=95.81 E-value=0.13 Score=60.20 Aligned_cols=175 Identities=16% Similarity=0.170 Sum_probs=99.7
Q ss_pred CCCCCcccchhhHHHHHHh---hcc-------CCCCcEEEEEEecCCChhHHHHHHHHHHhhccccceeecccccchhcC
Q 002220 183 TYSDGFVGLNSRIQKIKSL---LCI-------GLPDFRTIGIWGMGGIGKTTLAGAVFKLISREFEGKCFMPNVREESEN 252 (951)
Q Consensus 183 ~~~~~~vGr~~~~~~l~~~---L~~-------~~~~~~vv~I~G~gGiGKTtLA~~~~~~~~~~f~~~~~~~~~~~~~~~ 252 (951)
....++.|.|+..++|.+. |.. +..-++=|.++|++|.|||-||++++-+-.--| +.....
T Consensus 308 V~FkDVAG~deAK~El~E~V~fLKNP~~Y~~lGAKiPkGvLL~GPPGTGKTLLAKAiAGEAgVPF-----~svSGS---- 378 (774)
T KOG0731|consen 308 VKFKDVAGVDEAKEELMEFVKFLKNPEQYQELGAKIPKGVLLVGPPGTGKTLLAKAIAGEAGVPF-----FSVSGS---- 378 (774)
T ss_pred CccccccCcHHHHHHHHHHHHHhcCHHHHHHcCCcCcCceEEECCCCCcHHHHHHHHhcccCCce-----eeechH----
Confidence 3456789988876666554 432 112356789999999999999999997432222 211110
Q ss_pred CCChHHHHHHHHHHHhcCccccCCCCChHHHHHH----hcCCcEEEEEeCCCCh-----------------HHHHHHHhc
Q 002220 253 GGGLVYLRDRVVSEIFQEDIKIGTPYLPDYIVER----LNRMKVLTVLDDVNKV-----------------RQLHYLACV 311 (951)
Q Consensus 253 ~~~~~~l~~~il~~l~~~~~~~~~~~~~~~l~~~----l~~~~~LlVlDdv~~~-----------------~~~~~l~~~ 311 (951)
++.+...+. . ...+++. -...+..+.+|+++.. ..+.+++..
T Consensus 379 ---------EFvE~~~g~----~----asrvr~lf~~ar~~aP~iifideida~~~~r~G~~~~~~~~e~e~tlnQll~e 441 (774)
T KOG0731|consen 379 ---------EFVEMFVGV----G----ASRVRDLFPLARKNAPSIIFIDEIDAVGRKRGGKGTGGGQDEREQTLNQLLVE 441 (774)
T ss_pred ---------HHHHHhccc----c----hHHHHHHHHHhhccCCeEEEecccccccccccccccCCCChHHHHHHHHHHHH
Confidence 000000000 0 0112221 1234667777765321 125566665
Q ss_pred cCCCCCCC--EEEEEeCCchhhhhc-----CCCccceEEcCCCChhhhHHHHhhhhccCCCCChhHHHHHHHHHHHcCCC
Q 002220 312 LDQFGPGS--RIIITTRDKRILDDF-----GVCDTDIYEVNKLRFHEALVLFSNFAFKENQCPGDLLALLERVLKYANGN 384 (951)
Q Consensus 312 ~~~~~~gs--~IlvTtR~~~v~~~~-----~~~~~~~~~l~~L~~~~a~~Lf~~~~~~~~~~~~~~~~~~~~i~~~~~g~ 384 (951)
...+..+. -++-+|+..+++... ..+ +.+.++.-+.....++|.-|+-..... .+..++++ ++..+-|.
T Consensus 442 mDgf~~~~~vi~~a~tnr~d~ld~allrpGRfd--r~i~i~~p~~~~r~~i~~~h~~~~~~~-~e~~dl~~-~a~~t~gf 517 (774)
T KOG0731|consen 442 MDGFETSKGVIVLAATNRPDILDPALLRPGRFD--RQIQIDLPDVKGRASILKVHLRKKKLD-DEDVDLSK-LASLTPGF 517 (774)
T ss_pred hcCCcCCCcEEEEeccCCccccCHHhcCCCccc--cceeccCCchhhhHHHHHHHhhccCCC-cchhhHHH-HHhcCCCC
Confidence 55554433 334456655554332 244 678899999999999999988544332 33445556 88888888
Q ss_pred chH
Q 002220 385 PLA 387 (951)
Q Consensus 385 PLa 387 (951)
+=|
T Consensus 518 ~ga 520 (774)
T KOG0731|consen 518 SGA 520 (774)
T ss_pred cHH
Confidence 755
No 309
>PRK05541 adenylylsulfate kinase; Provisional
Probab=95.81 E-value=0.0095 Score=58.40 Aligned_cols=36 Identities=28% Similarity=0.467 Sum_probs=31.2
Q ss_pred CcEEEEEEecCCChhHHHHHHHHHHhhccccceeec
Q 002220 208 DFRTIGIWGMGGIGKTTLAGAVFKLISREFEGKCFM 243 (951)
Q Consensus 208 ~~~vv~I~G~gGiGKTtLA~~~~~~~~~~f~~~~~~ 243 (951)
...+|.+.|+.|.||||+|+.++.++...+...+++
T Consensus 6 ~~~~I~i~G~~GsGKst~a~~l~~~l~~~~~~~~~~ 41 (176)
T PRK05541 6 NGYVIWITGLAGSGKTTIAKALYERLKLKYSNVIYL 41 (176)
T ss_pred CCCEEEEEcCCCCCHHHHHHHHHHHHHHcCCcEEEE
Confidence 446999999999999999999999888777777766
No 310
>PRK12726 flagellar biosynthesis regulator FlhF; Provisional
Probab=95.79 E-value=0.15 Score=55.08 Aligned_cols=37 Identities=24% Similarity=0.303 Sum_probs=28.0
Q ss_pred CCcEEEEEEecCCChhHHHHHHHHHHhhccccceeec
Q 002220 207 PDFRTIGIWGMGGIGKTTLAGAVFKLISREFEGKCFM 243 (951)
Q Consensus 207 ~~~~vv~I~G~gGiGKTtLA~~~~~~~~~~f~~~~~~ 243 (951)
.+.++++++|+.|+||||++..++.....+-..+.++
T Consensus 204 ~~~~ii~lvGptGvGKTTt~akLA~~l~~~g~~V~lI 240 (407)
T PRK12726 204 SNHRIISLIGQTGVGKTTTLVKLGWQLLKQNRTVGFI 240 (407)
T ss_pred cCCeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEE
Confidence 3468999999999999999999987654433334444
No 311
>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A.
Probab=95.77 E-value=0.033 Score=51.23 Aligned_cols=35 Identities=11% Similarity=0.356 Sum_probs=13.3
Q ss_pred cccCCCCcEEEcccCCCcccCc-cccCCCCCcEEeec
Q 002220 789 LEKMELLETLDLERTGVKELPP-SFENLQGLRQLSLI 824 (951)
Q Consensus 789 l~~l~~L~~L~l~~n~i~~l~~-~~~~l~~L~~L~l~ 824 (951)
|..+++|+.+.+..+ +..++. .|.++++|+.+.+.
T Consensus 31 F~~~~~l~~i~~~~~-~~~i~~~~F~~~~~l~~i~~~ 66 (129)
T PF13306_consen 31 FSNCTSLKSINFPNN-LTSIGDNAFSNCKSLESITFP 66 (129)
T ss_dssp TTT-TT-SEEEESST-TSCE-TTTTTT-TT-EEEEET
T ss_pred ccccccccccccccc-ccccceeeeeccccccccccc
Confidence 444444555554442 333322 34444455555553
No 312
>TIGR02012 tigrfam_recA protein RecA. This model describes orthologs of the recA protein. RecA promotes hybridization of homolgous regions of DNA. A segment of ssDNA can be hybridized to another ssDNA region, or to a dsDNA region. ATP is hydrolyzed in the process. Part of the SOS respones, it is regulated by LexA via autocatalytic cleavage.
Probab=95.77 E-value=0.018 Score=61.26 Aligned_cols=49 Identities=31% Similarity=0.300 Sum_probs=36.4
Q ss_pred HHHHHhhc-cCCCCcEEEEEEecCCChhHHHHHHHHHHhhccccceeecc
Q 002220 196 QKIKSLLC-IGLPDFRTIGIWGMGGIGKTTLAGAVFKLISREFEGKCFMP 244 (951)
Q Consensus 196 ~~l~~~L~-~~~~~~~vv~I~G~gGiGKTtLA~~~~~~~~~~f~~~~~~~ 244 (951)
..|..+|. .+=+.-+++-|+|++|+||||||.+++......-..++|++
T Consensus 41 ~~LD~~Lg~GGlp~G~iteI~G~~GsGKTtLaL~~~~~~~~~g~~v~yId 90 (321)
T TIGR02012 41 LSLDLALGVGGLPRGRIIEIYGPESSGKTTLALHAIAEAQKAGGTAAFID 90 (321)
T ss_pred HHHHHHhcCCCCcCCeEEEEECCCCCCHHHHHHHHHHHHHHcCCcEEEEc
Confidence 34555564 33456689999999999999999998876655555667774
No 313
>COG1066 Sms Predicted ATP-dependent serine protease [Posttranslational modification, protein turnover, chaperones]
Probab=95.75 E-value=0.05 Score=58.16 Aligned_cols=97 Identities=24% Similarity=0.213 Sum_probs=57.6
Q ss_pred HHHHHHhhccCCCCcEEEEEEecCCChhHHHHHHHHHHhhccccceeecccccchhcCCCChHHHHHHHHHHHhcCcccc
Q 002220 195 IQKIKSLLCIGLPDFRTIGIWGMGGIGKTTLAGAVFKLISREFEGKCFMPNVREESENGGGLVYLRDRVVSEIFQEDIKI 274 (951)
Q Consensus 195 ~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~l~~~il~~l~~~~~~~ 274 (951)
+.++.+.|..+--.-.+|.|-|-+|||||||..+++.++..+- .+.|+.. +.| ..++ +.-+..+.-...+.
T Consensus 79 ~~EldRVLGGG~V~Gs~iLIgGdPGIGKSTLLLQva~~lA~~~-~vLYVsG--EES-----~~Qi-klRA~RL~~~~~~l 149 (456)
T COG1066 79 IEELDRVLGGGLVPGSVILIGGDPGIGKSTLLLQVAARLAKRG-KVLYVSG--EES-----LQQI-KLRADRLGLPTNNL 149 (456)
T ss_pred hHHHHhhhcCCcccccEEEEccCCCCCHHHHHHHHHHHHHhcC-cEEEEeC--CcC-----HHHH-HHHHHHhCCCccce
Confidence 4566666643323347899999999999999999999988776 7788752 111 1111 22233333222111
Q ss_pred --CCCCChHHHHHHh-cCCcEEEEEeCCC
Q 002220 275 --GTPYLPDYIVERL-NRMKVLTVLDDVN 300 (951)
Q Consensus 275 --~~~~~~~~l~~~l-~~~~~LlVlDdv~ 300 (951)
-.....+.+.+.+ +.++-++|+|.+.
T Consensus 150 ~l~aEt~~e~I~~~l~~~~p~lvVIDSIQ 178 (456)
T COG1066 150 YLLAETNLEDIIAELEQEKPDLVVIDSIQ 178 (456)
T ss_pred EEehhcCHHHHHHHHHhcCCCEEEEeccc
Confidence 1112224444444 4577899999873
No 314
>PF13238 AAA_18: AAA domain; PDB: 3IIK_A 3IIJ_A 3IIL_A 1RKB_A 3IIM_A 2AXP_A 3KB2_A 1KHT_A 1NKS_A 3H86_C ....
Probab=95.74 E-value=0.0084 Score=55.20 Aligned_cols=22 Identities=45% Similarity=0.664 Sum_probs=20.4
Q ss_pred EEEEecCCChhHHHHHHHHHHh
Q 002220 212 IGIWGMGGIGKTTLAGAVFKLI 233 (951)
Q Consensus 212 v~I~G~gGiGKTtLA~~~~~~~ 233 (951)
|+|.|.+|+||||+|+++..+.
T Consensus 1 I~i~G~~GsGKtTia~~L~~~~ 22 (129)
T PF13238_consen 1 IGISGIPGSGKTTIAKELAERL 22 (129)
T ss_dssp EEEEESTTSSHHHHHHHHHHHH
T ss_pred CEEECCCCCCHHHHHHHHHHHH
Confidence 6899999999999999999874
No 315
>KOG0728 consensus 26S proteasome regulatory complex, ATPase RPT6 [Posttranslational modification, protein turnover, chaperones]
Probab=95.73 E-value=0.46 Score=46.99 Aligned_cols=146 Identities=22% Similarity=0.326 Sum_probs=79.0
Q ss_pred Cccc-chhhHHHHHHhhcc-----------CCCCcEEEEEEecCCChhHHHHHHHHHHhhccccceeecccccchhcCCC
Q 002220 187 GFVG-LNSRIQKIKSLLCI-----------GLPDFRTIGIWGMGGIGKTTLAGAVFKLISREFEGKCFMPNVREESENGG 254 (951)
Q Consensus 187 ~~vG-r~~~~~~l~~~L~~-----------~~~~~~vv~I~G~gGiGKTtLA~~~~~~~~~~f~~~~~~~~~~~~~~~~~ 254 (951)
.+|| .|..+++|.+.+.. +-.+++-+.++|++|.|||-||+++|+.- .+.|+. +.
T Consensus 147 eMiGgLd~QIkeIkEVIeLPvKHPELF~aLGIaQPKGvlLygppgtGktLlaraVahht-----~c~fir-vs------- 213 (404)
T KOG0728|consen 147 EMIGGLDKQIKEIKEVIELPVKHPELFEALGIAQPKGVLLYGPPGTGKTLLARAVAHHT-----DCTFIR-VS------- 213 (404)
T ss_pred HHhccHHHHHHHHHHHHhccccCHHHHHhcCCCCCcceEEecCCCCchhHHHHHHHhhc-----ceEEEE-ec-------
Confidence 3444 45566666655532 12456778999999999999999998732 233332 21
Q ss_pred ChHHHHHHHHHHHhcCccccCCCCChHHHHHHh----cCCcEEEEEeCCCChH--------------H--HHHHHhccCC
Q 002220 255 GLVYLRDRVVSEIFQEDIKIGTPYLPDYIVERL----NRMKVLTVLDDVNKVR--------------Q--LHYLACVLDQ 314 (951)
Q Consensus 255 ~~~~l~~~il~~l~~~~~~~~~~~~~~~l~~~l----~~~~~LlVlDdv~~~~--------------~--~~~l~~~~~~ 314 (951)
+..-+++-|-... ..+++.+ ..-+-.|..|.+++.. | .-.++..+..
T Consensus 214 gselvqk~igegs-------------rmvrelfvmarehapsiifmdeidsigs~r~e~~~ggdsevqrtmlellnqldg 280 (404)
T KOG0728|consen 214 GSELVQKYIGEGS-------------RMVRELFVMAREHAPSIIFMDEIDSIGSSRVESGSGGDSEVQRTMLELLNQLDG 280 (404)
T ss_pred hHHHHHHHhhhhH-------------HHHHHHHHHHHhcCCceEeeecccccccccccCCCCccHHHHHHHHHHHHhccc
Confidence 1111222111100 2222221 2345677778775331 1 1223333333
Q ss_pred C--CCCCEEEEEeCCchhhhhc-----CCCccceEEcCCCChhhhHHHHhhhh
Q 002220 315 F--GPGSRIIITTRDKRILDDF-----GVCDTDIYEVNKLRFHEALVLFSNFA 360 (951)
Q Consensus 315 ~--~~gs~IlvTtR~~~v~~~~-----~~~~~~~~~l~~L~~~~a~~Lf~~~~ 360 (951)
+ ....+||+.|..-+++... .++ +.++.++-+++.-.+++.-+.
T Consensus 281 featknikvimatnridild~allrpgrid--rkiefp~p~e~ar~~ilkihs 331 (404)
T KOG0728|consen 281 FEATKNIKVIMATNRIDILDPALLRPGRID--RKIEFPPPNEEARLDILKIHS 331 (404)
T ss_pred cccccceEEEEeccccccccHhhcCCCccc--ccccCCCCCHHHHHHHHHHhh
Confidence 3 3567888877655444322 344 667888888777777776554
No 316
>KOG1970 consensus Checkpoint RAD17-RFC complex, RAD17/RAD24 component [Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=95.72 E-value=0.19 Score=55.72 Aligned_cols=41 Identities=24% Similarity=0.259 Sum_probs=32.4
Q ss_pred hhHHHHHHhhc-----cCCCCcEEEEEEecCCChhHHHHHHHHHHh
Q 002220 193 SRIQKIKSLLC-----IGLPDFRTIGIWGMGGIGKTTLAGAVFKLI 233 (951)
Q Consensus 193 ~~~~~l~~~L~-----~~~~~~~vv~I~G~gGiGKTtLA~~~~~~~ 233 (951)
+-++++..||. ...-+.+++.|+|++|+||||..+.++..+
T Consensus 89 kKI~eVk~WL~~~~~~~~~l~~~iLLltGPsGcGKSTtvkvLskel 134 (634)
T KOG1970|consen 89 KKISEVKQWLKQVAEFTPKLGSRILLLTGPSGCGKSTTVKVLSKEL 134 (634)
T ss_pred HhHHHHHHHHHHHHHhccCCCceEEEEeCCCCCCchhHHHHHHHhh
Confidence 44667777776 344567899999999999999999988754
No 317
>COG2884 FtsE Predicted ATPase involved in cell division [Cell division and chromosome partitioning]
Probab=95.69 E-value=0.074 Score=50.59 Aligned_cols=55 Identities=9% Similarity=0.164 Sum_probs=37.5
Q ss_pred HHHHHHhcCCcEEEEEeC----CCChHHHHHHHhccCCCCCCCEEEEEeCCchhhhhcC
Q 002220 281 DYIVERLNRMKVLTVLDD----VNKVRQLHYLACVLDQFGPGSRIIITTRDKRILDDFG 335 (951)
Q Consensus 281 ~~l~~~l~~~~~LlVlDd----v~~~~~~~~l~~~~~~~~~gs~IlvTtR~~~v~~~~~ 335 (951)
-.|.+.+-+++-+++-|. ++....|+-+.-.-.-...|+.||++|-+.++...+.
T Consensus 146 vaIARAiV~~P~vLlADEPTGNLDp~~s~~im~lfeeinr~GtTVl~ATHd~~lv~~~~ 204 (223)
T COG2884 146 VAIARAIVNQPAVLLADEPTGNLDPDLSWEIMRLFEEINRLGTTVLMATHDLELVNRMR 204 (223)
T ss_pred HHHHHHHccCCCeEeecCCCCCCChHHHHHHHHHHHHHhhcCcEEEEEeccHHHHHhcc
Confidence 667788889999999995 4444444432211112256999999999998877764
No 318
>KOG2035 consensus Replication factor C, subunit RFC3 [Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=95.69 E-value=0.32 Score=49.20 Aligned_cols=225 Identities=19% Similarity=0.236 Sum_probs=122.5
Q ss_pred CCcccchhhHHHHHHhhccCCCCcEEEEEEecCCChhHHHHHHHHHHhhc------cccceeecccccc-----------
Q 002220 186 DGFVGLNSRIQKIKSLLCIGLPDFRTIGIWGMGGIGKTTLAGAVFKLISR------EFEGKCFMPNVRE----------- 248 (951)
Q Consensus 186 ~~~vGr~~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~~~~~~~~------~f~~~~~~~~~~~----------- 248 (951)
+.+.++++...++.++.. ..+..-..++|+.|.||-|.+..+.+.+-+ +-+...|......
T Consensus 13 ~~l~~~~e~~~~Lksl~~--~~d~PHll~yGPSGaGKKTrimclL~elYG~gveklki~~~t~~tpS~kklEistvsS~y 90 (351)
T KOG2035|consen 13 DELIYHEELANLLKSLSS--TGDFPHLLVYGPSGAGKKTRIMCLLRELYGVGVEKLKIETRTFTTPSKKKLEISTVSSNY 90 (351)
T ss_pred hhcccHHHHHHHHHHhcc--cCCCCeEEEECCCCCCchhhHHHHHHHHhCCCchheeeeeEEEecCCCceEEEEEecccc
Confidence 446777777777777654 345677889999999999999888774321 2222333321111
Q ss_pred ---h--hcCCCChHHHHHHHHHHHhcCccccCCCCChHHHHHHhcCCcE-EEEEeCCCCh--HHHHHHHhccCCCCCCCE
Q 002220 249 ---E--SENGGGLVYLRDRVVSEIFQEDIKIGTPYLPDYIVERLNRMKV-LTVLDDVNKV--RQLHYLACVLDQFGPGSR 320 (951)
Q Consensus 249 ---~--~~~~~~~~~l~~~il~~l~~~~~~~~~~~~~~~l~~~l~~~~~-LlVlDdv~~~--~~~~~l~~~~~~~~~gs~ 320 (951)
. |+....-..+.+.+++++.+...-... ..+.| ++|+-.+++. +.-.++..........+|
T Consensus 91 HlEitPSDaG~~DRvViQellKevAQt~qie~~-----------~qr~fKvvvi~ead~LT~dAQ~aLRRTMEkYs~~~R 159 (351)
T KOG2035|consen 91 HLEITPSDAGNYDRVVIQELLKEVAQTQQIETQ-----------GQRPFKVVVINEADELTRDAQHALRRTMEKYSSNCR 159 (351)
T ss_pred eEEeChhhcCcccHHHHHHHHHHHHhhcchhhc-----------cccceEEEEEechHhhhHHHHHHHHHHHHHHhcCce
Confidence 0 000111123344455554443222111 12334 5555555433 222334433334456778
Q ss_pred EEEEeCCc----hhhhhcCCCccceEEcCCCChhhhHHHHhhhhccCCCCChhHHHHHHHHHHHcCCCc-hHH---HHHh
Q 002220 321 IIITTRDK----RILDDFGVCDTDIYEVNKLRFHEALVLFSNFAFKENQCPGDLLALLERVLKYANGNP-LAL---RVLG 392 (951)
Q Consensus 321 IlvTtR~~----~v~~~~~~~~~~~~~l~~L~~~~a~~Lf~~~~~~~~~~~~~~~~~~~~i~~~~~g~P-Lal---~~~~ 392 (951)
+|+.-.+. .-..+.. -.+.+...+++|....+++.+-++...-+ .+++.+|+++++|+- -|+ +.+.
T Consensus 160 lIl~cns~SriIepIrSRC----l~iRvpaps~eeI~~vl~~v~~kE~l~lp--~~~l~rIa~kS~~nLRrAllmlE~~~ 233 (351)
T KOG2035|consen 160 LILVCNSTSRIIEPIRSRC----LFIRVPAPSDEEITSVLSKVLKKEGLQLP--KELLKRIAEKSNRNLRRALLMLEAVR 233 (351)
T ss_pred EEEEecCcccchhHHhhhe----eEEeCCCCCHHHHHHHHHHHHHHhcccCc--HHHHHHHHHHhcccHHHHHHHHHHHH
Confidence 87754332 1111111 46899999999999999988755443333 478999999999973 222 2221
Q ss_pred hh--c-CC----CCHHHHHHHHHHHhc-----CCCcchHHHHHHhhcCC
Q 002220 393 SF--F-HR----KSKSDWEKALENLNR-----ISDPDIYDVLKISYNDL 429 (951)
Q Consensus 393 ~~--L-~~----~~~~~w~~~l~~l~~-----~~~~~i~~~l~~sy~~L 429 (951)
-. . .. -...+|+-.+.+..+ .....+..+-..-|+-|
T Consensus 234 ~~n~~~~a~~~~i~~~dWe~~i~e~a~~i~~eQs~~~L~~vR~~LYeLL 282 (351)
T KOG2035|consen 234 VNNEPFTANSQVIPKPDWEIYIQEIARVILKEQSPAKLLEVRGRLYELL 282 (351)
T ss_pred hccccccccCCCCCCccHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHH
Confidence 10 0 01 145679888876542 33444555555555544
No 319
>cd03222 ABC_RNaseL_inhibitor The ABC ATPase RNase L inhibitor (RLI) is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins, and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains, which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=95.69 E-value=0.029 Score=54.56 Aligned_cols=105 Identities=18% Similarity=0.136 Sum_probs=55.8
Q ss_pred cEEEEEEecCCChhHHHHHHHHHHhhccccceeecccc--cchhcCCCChHHHHHHHHHHHhcCccccCCCCCh-HHHHH
Q 002220 209 FRTIGIWGMGGIGKTTLAGAVFKLISREFEGKCFMPNV--REESENGGGLVYLRDRVVSEIFQEDIKIGTPYLP-DYIVE 285 (951)
Q Consensus 209 ~~vv~I~G~gGiGKTtLA~~~~~~~~~~f~~~~~~~~~--~~~~~~~~~~~~l~~~il~~l~~~~~~~~~~~~~-~~l~~ 285 (951)
-.+++|.|..|.|||||++.++..... ..+.+++... .-..+ ... .+..+.+ -.+.+
T Consensus 25 Ge~~~l~G~nGsGKSTLl~~l~Gl~~p-~~G~i~~~g~~i~~~~q-~~~------------------LSgGq~qrv~lar 84 (177)
T cd03222 25 GEVIGIVGPNGTGKTTAVKILAGQLIP-NGDNDEWDGITPVYKPQ-YID------------------LSGGELQRVAIAA 84 (177)
T ss_pred CCEEEEECCCCChHHHHHHHHHcCCCC-CCcEEEECCEEEEEEcc-cCC------------------CCHHHHHHHHHHH
Confidence 358999999999999999998864332 2333333211 00011 000 1111111 34555
Q ss_pred HhcCCcEEEEEeCCC---ChHHHHHHHhccCCC-CC-CCEEEEEeCCchhhhh
Q 002220 286 RLNRMKVLTVLDDVN---KVRQLHYLACVLDQF-GP-GSRIIITTRDKRILDD 333 (951)
Q Consensus 286 ~l~~~~~LlVlDdv~---~~~~~~~l~~~~~~~-~~-gs~IlvTtR~~~v~~~ 333 (951)
.+..++-++++|+-- |....+.+...+... .. +..||++|.+......
T Consensus 85 al~~~p~lllLDEPts~LD~~~~~~l~~~l~~~~~~~~~tiiivsH~~~~~~~ 137 (177)
T cd03222 85 ALLRNATFYLFDEPSAYLDIEQRLNAARAIRRLSEEGKKTALVVEHDLAVLDY 137 (177)
T ss_pred HHhcCCCEEEEECCcccCCHHHHHHHHHHHHHHHHcCCCEEEEEECCHHHHHH
Confidence 666778899999863 333222222222111 12 3567888877765543
No 320
>PRK09354 recA recombinase A; Provisional
Probab=95.69 E-value=0.021 Score=61.21 Aligned_cols=49 Identities=29% Similarity=0.293 Sum_probs=37.6
Q ss_pred HHHHHhhc-cCCCCcEEEEEEecCCChhHHHHHHHHHHhhccccceeecc
Q 002220 196 QKIKSLLC-IGLPDFRTIGIWGMGGIGKTTLAGAVFKLISREFEGKCFMP 244 (951)
Q Consensus 196 ~~l~~~L~-~~~~~~~vv~I~G~gGiGKTtLA~~~~~~~~~~f~~~~~~~ 244 (951)
..|..+|. .+=+.-+++-|+|++|+||||||.+++......-..++|++
T Consensus 46 ~~LD~~LG~GGip~G~IteI~G~~GsGKTtLal~~~~~~~~~G~~~~yId 95 (349)
T PRK09354 46 LALDIALGIGGLPRGRIVEIYGPESSGKTTLALHAIAEAQKAGGTAAFID 95 (349)
T ss_pred HHHHHHhcCCCCcCCeEEEEECCCCCCHHHHHHHHHHHHHHcCCcEEEEC
Confidence 44566665 34456689999999999999999999876666666778875
No 321
>PRK10923 glnG nitrogen regulation protein NR(I); Provisional
Probab=95.67 E-value=0.18 Score=58.17 Aligned_cols=47 Identities=19% Similarity=0.212 Sum_probs=37.6
Q ss_pred CCcccchhhHHHHHHhhccCCCCcEEEEEEecCCChhHHHHHHHHHH
Q 002220 186 DGFVGLNSRIQKIKSLLCIGLPDFRTIGIWGMGGIGKTTLAGAVFKL 232 (951)
Q Consensus 186 ~~~vGr~~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~~~~~ 232 (951)
..++|....+.++...+..-......|.|+|.+|+|||++|+.+.+.
T Consensus 138 ~~lig~s~~~~~l~~~~~~~~~~~~~vli~Ge~GtGK~~lA~~ih~~ 184 (469)
T PRK10923 138 TDIIGEAPAMQDVFRIIGRLSRSSISVLINGESGTGKELVAHALHRH 184 (469)
T ss_pred ccceecCHHHHHHHHHHHHHhccCCeEEEEeCCCCcHHHHHHHHHhc
Confidence 46899998888887776533344566889999999999999998773
No 322
>PF00485 PRK: Phosphoribulokinase / Uridine kinase family; InterPro: IPR006083 Phosphoribulokinase (PRK) 2.7.1.19 from EC catalyses the ATP-dependent phosphorylation of ribulose-5-phosphate to ribulose-1,5-phosphate, a key step in the pentose phosphate pathway where carbon dioxide is assimilated by autotrophic organisms []. In general, plant enzymes are light-activated by the thioredoxin/ferredoxin system, while those from photosynthetic bacteria are regulated by a system that has an absolute requirement for NADH. Thioredoxin/ferredoxin regulation is mediated by the reversible oxidation/reduction of sulphydryl and disulphide groups. Uridine kinase (pyrimidine ribonucleoside kinase) is the rate-limiting enzyme in the pyrimidine salvage pathway. It catalyzes the following reaction: ATP + Uridine = ADP + UMP Pantothenate kinase (2.7.1.33 from EC) catalyzes the rate-limiting step in the biosynthesis of coenzyme A, the conversion of pantothenate to D-4'-phosphopantothenate in the presence of ATP. ; GO: 0005524 ATP binding, 0016301 kinase activity, 0008152 metabolic process; PDB: 2ZSE_A 2ZS7_A 3AF0_A 3AVP_A 2ZS9_A 2ZS8_A 3AEZ_A 2ZSB_A 2ZSD_A 2GEV_A ....
Probab=95.67 E-value=0.01 Score=59.26 Aligned_cols=26 Identities=42% Similarity=0.640 Sum_probs=23.3
Q ss_pred EEEEEecCCChhHHHHHHHHHHhhcc
Q 002220 211 TIGIWGMGGIGKTTLAGAVFKLISRE 236 (951)
Q Consensus 211 vv~I~G~gGiGKTtLA~~~~~~~~~~ 236 (951)
||+|.|.+|.||||+|+++...+...
T Consensus 1 IIgI~G~sgSGKTTla~~L~~~L~~~ 26 (194)
T PF00485_consen 1 IIGIAGPSGSGKTTLAKRLAQILNKR 26 (194)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHHTTC
T ss_pred CEEEECCCCCCHHHHHHHHHHHhCcc
Confidence 69999999999999999999977643
No 323
>cd03216 ABC_Carb_Monos_I This family represents the domain I of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. Pentoses include xylose, arabinose, and ribose. Important hexoses include glucose, galactose, and fructose. In members of the Carb_monos family, the single hydrophobic gene product forms a homodimer while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.
Probab=95.66 E-value=0.019 Score=55.38 Aligned_cols=116 Identities=18% Similarity=0.138 Sum_probs=60.0
Q ss_pred cEEEEEEecCCChhHHHHHHHHHHhhccccceeecccccchhcCCCChHHHHHHHHHHHhcCccccCCCCCh-HHHHHHh
Q 002220 209 FRTIGIWGMGGIGKTTLAGAVFKLISREFEGKCFMPNVREESENGGGLVYLRDRVVSEIFQEDIKIGTPYLP-DYIVERL 287 (951)
Q Consensus 209 ~~vv~I~G~gGiGKTtLA~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~l~~~il~~l~~~~~~~~~~~~~-~~l~~~l 287 (951)
-.+++|.|..|.|||||.+.++-... ...+.+++.... .. ........+ ..+.- ....+..+.+ -.+.+.+
T Consensus 26 Ge~~~l~G~nGsGKSTLl~~i~G~~~-~~~G~v~~~g~~-~~--~~~~~~~~~---~~i~~-~~qLS~G~~qrl~laral 97 (163)
T cd03216 26 GEVHALLGENGAGKSTLMKILSGLYK-PDSGEILVDGKE-VS--FASPRDARR---AGIAM-VYQLSVGERQMVEIARAL 97 (163)
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCCC-CCCeEEEECCEE-CC--cCCHHHHHh---cCeEE-EEecCHHHHHHHHHHHHH
Confidence 35899999999999999999986432 234445543211 10 000100000 00000 0001111112 4455566
Q ss_pred cCCcEEEEEeCCC---ChHHHHHHHhccCCC-CCCCEEEEEeCCchhhh
Q 002220 288 NRMKVLTVLDDVN---KVRQLHYLACVLDQF-GPGSRIIITTRDKRILD 332 (951)
Q Consensus 288 ~~~~~LlVlDdv~---~~~~~~~l~~~~~~~-~~gs~IlvTtR~~~v~~ 332 (951)
-.++-++++|+.. |....+.+...+... ..|..||++|.+.....
T Consensus 98 ~~~p~illlDEP~~~LD~~~~~~l~~~l~~~~~~~~tiii~sh~~~~~~ 146 (163)
T cd03216 98 ARNARLLILDEPTAALTPAEVERLFKVIRRLRAQGVAVIFISHRLDEVF 146 (163)
T ss_pred hcCCCEEEEECCCcCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHH
Confidence 6778899999873 333333333332221 24667888888876443
No 324
>PRK12337 2-phosphoglycerate kinase; Provisional
Probab=95.65 E-value=0.0086 Score=65.94 Aligned_cols=27 Identities=33% Similarity=0.452 Sum_probs=24.1
Q ss_pred CCcEEEEEEecCCChhHHHHHHHHHHh
Q 002220 207 PDFRTIGIWGMGGIGKTTLAGAVFKLI 233 (951)
Q Consensus 207 ~~~~vv~I~G~gGiGKTtLA~~~~~~~ 233 (951)
..+.+|.+.|.+|+||||+|.+++.+.
T Consensus 253 k~p~vil~~G~~G~GKSt~a~~LA~~l 279 (475)
T PRK12337 253 PRPLHVLIGGVSGVGKSVLASALAYRL 279 (475)
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHc
Confidence 357899999999999999999999864
No 325
>COG0563 Adk Adenylate kinase and related kinases [Nucleotide transport and metabolism]
Probab=95.65 E-value=0.033 Score=54.15 Aligned_cols=23 Identities=43% Similarity=0.482 Sum_probs=20.8
Q ss_pred EEEEEecCCChhHHHHHHHHHHh
Q 002220 211 TIGIWGMGGIGKTTLAGAVFKLI 233 (951)
Q Consensus 211 vv~I~G~gGiGKTtLA~~~~~~~ 233 (951)
.|.|.|.+|.||||+|+.+++++
T Consensus 2 riiilG~pGaGK~T~A~~La~~~ 24 (178)
T COG0563 2 RILILGPPGAGKSTLAKKLAKKL 24 (178)
T ss_pred eEEEECCCCCCHHHHHHHHHHHh
Confidence 47899999999999999999873
No 326
>TIGR02329 propionate_PrpR propionate catabolism operon regulatory protein PrpR. At least five distinct pathways exists for the catabolism of propionate by way of propionyl-CoA. Members of this family represent the transcriptional regulatory protein PrpR, whose gene is found in most cases divergently transcribed from an operon for the methylcitric acid cycle of propionate catabolism. 2-methylcitric acid, a catabolite by this pathway, is a coactivator of PrpR.
Probab=95.63 E-value=0.21 Score=57.48 Aligned_cols=48 Identities=25% Similarity=0.413 Sum_probs=38.5
Q ss_pred CCCcccchhhHHHHHHhhccCCCCcEEEEEEecCCChhHHHHHHHHHH
Q 002220 185 SDGFVGLNSRIQKIKSLLCIGLPDFRTIGIWGMGGIGKTTLAGAVFKL 232 (951)
Q Consensus 185 ~~~~vGr~~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~~~~~ 232 (951)
.+.++|....+.++.+.+..-.....-|.|.|..|+||+++|+.+.+.
T Consensus 211 f~~iiG~S~~m~~~~~~i~~~A~~~~pVLI~GE~GTGKe~lA~~IH~~ 258 (526)
T TIGR02329 211 LDDLLGASAPMEQVRALVRLYARSDATVLILGESGTGKELVAQAIHQL 258 (526)
T ss_pred hhheeeCCHHHHHHHHHHHHHhCCCCcEEEECCCCcCHHHHHHHHHHh
Confidence 345999999998888877533334467889999999999999999863
No 327
>PF13604 AAA_30: AAA domain; PDB: 1W36_G 3K70_G 3UPU_B 3GPL_A 3E1S_A 3GP8_A.
Probab=95.61 E-value=0.071 Score=53.08 Aligned_cols=39 Identities=26% Similarity=0.337 Sum_probs=28.7
Q ss_pred HHHHHHhhccCCCCcEEEEEEecCCChhHHHHHHHHHHhhcc
Q 002220 195 IQKIKSLLCIGLPDFRTIGIWGMGGIGKTTLAGAVFKLISRE 236 (951)
Q Consensus 195 ~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~~~~~~~~~ 236 (951)
.+.+...+. .+-+++.|.|.+|.||||+++.+...+...
T Consensus 7 ~~a~~~~l~---~~~~~~~l~G~aGtGKT~~l~~~~~~~~~~ 45 (196)
T PF13604_consen 7 REAVRAILT---SGDRVSVLQGPAGTGKTTLLKALAEALEAA 45 (196)
T ss_dssp HHHHHHHHH---CTCSEEEEEESTTSTHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHh---cCCeEEEEEECCCCCHHHHHHHHHHHHHhC
Confidence 344555553 234688899999999999999988866554
No 328
>PRK05703 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=95.61 E-value=0.14 Score=57.40 Aligned_cols=26 Identities=23% Similarity=0.259 Sum_probs=22.9
Q ss_pred cEEEEEEecCCChhHHHHHHHHHHhh
Q 002220 209 FRTIGIWGMGGIGKTTLAGAVFKLIS 234 (951)
Q Consensus 209 ~~vv~I~G~gGiGKTtLA~~~~~~~~ 234 (951)
.++++++|++|+||||++..++....
T Consensus 221 ~~~i~~vGptGvGKTTt~~kLA~~~~ 246 (424)
T PRK05703 221 GGVVALVGPTGVGKTTTLAKLAARYA 246 (424)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHHH
Confidence 46899999999999999999987664
No 329
>cd01129 PulE-GspE PulE/GspE The type II secretory pathway is the main terminal branch of the general secretory pathway (GSP). It is responsible for the export the majority of Gram-negative bacterial exoenzymes and toxins. PulE is a cytoplasmic protein of the GSP, which contains an ATP binding site and a tetracysteine motif. This subgroup also includes PillB and HofB.
Probab=95.61 E-value=0.051 Score=56.81 Aligned_cols=116 Identities=12% Similarity=0.091 Sum_probs=65.1
Q ss_pred HHHHHHhhccCCCCcEEEEEEecCCChhHHHHHHHHHHhhccccceeecccccchhcCCCChHHHHHHHHHHHhcCcccc
Q 002220 195 IQKIKSLLCIGLPDFRTIGIWGMGGIGKTTLAGAVFKLISREFEGKCFMPNVREESENGGGLVYLRDRVVSEIFQEDIKI 274 (951)
Q Consensus 195 ~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~l~~~il~~l~~~~~~~ 274 (951)
++.+..++. ....+|.|.|..|.||||+++.+...+...-..++.+.+..+... .++ .++... ..
T Consensus 69 ~~~l~~~~~---~~~GlilisG~tGSGKTT~l~all~~i~~~~~~iitiEdp~E~~~--~~~--------~q~~v~--~~ 133 (264)
T cd01129 69 LEIFRKLLE---KPHGIILVTGPTGSGKTTTLYSALSELNTPEKNIITVEDPVEYQI--PGI--------NQVQVN--EK 133 (264)
T ss_pred HHHHHHHHh---cCCCEEEEECCCCCcHHHHHHHHHhhhCCCCCeEEEECCCceecC--CCc--------eEEEeC--Cc
Confidence 344555553 223589999999999999999988766432223444443322111 010 000000 00
Q ss_pred CCCCChHHHHHHhcCCcEEEEEeCCCChHHHHHHHhccCCCCCCCEEEEEeCCc
Q 002220 275 GTPYLPDYIVERLNRMKVLTVLDDVNKVRQLHYLACVLDQFGPGSRIIITTRDK 328 (951)
Q Consensus 275 ~~~~~~~~l~~~l~~~~~LlVlDdv~~~~~~~~l~~~~~~~~~gs~IlvTtR~~ 328 (951)
......+.++..++..+=.++++++.+.+....+.... ..|..++-|....
T Consensus 134 ~~~~~~~~l~~~lR~~PD~i~vgEiR~~e~a~~~~~aa---~tGh~v~tTlHa~ 184 (264)
T cd01129 134 AGLTFARGLRAILRQDPDIIMVGEIRDAETAEIAVQAA---LTGHLVLSTLHTN 184 (264)
T ss_pred CCcCHHHHHHHHhccCCCEEEeccCCCHHHHHHHHHHH---HcCCcEEEEeccC
Confidence 11112277888888889999999999988755444332 2344444444433
No 330
>PRK09270 nucleoside triphosphate hydrolase domain-containing protein; Reviewed
Probab=95.60 E-value=0.018 Score=59.10 Aligned_cols=32 Identities=31% Similarity=0.338 Sum_probs=27.1
Q ss_pred CCCcEEEEEEecCCChhHHHHHHHHHHhhccc
Q 002220 206 LPDFRTIGIWGMGGIGKTTLAGAVFKLISREF 237 (951)
Q Consensus 206 ~~~~~vv~I~G~gGiGKTtLA~~~~~~~~~~f 237 (951)
.....+++|.|.+|.|||||++.+...++...
T Consensus 30 ~~~~~iigi~G~~GsGKTTl~~~L~~~l~~~~ 61 (229)
T PRK09270 30 PQRRTIVGIAGPPGAGKSTLAEFLEALLQQDG 61 (229)
T ss_pred CCCCEEEEEECCCCCCHHHHHHHHHHHhhhcc
Confidence 35678999999999999999999998766543
No 331
>PF13671 AAA_33: AAA domain; PDB: 1LTQ_A 2IA5_K 1RC8_A 1LY1_A 1RRC_A 1RPZ_A 3ZVM_A 1YJ5_A 3ZVL_A 3U7E_B ....
Probab=95.59 E-value=0.054 Score=50.90 Aligned_cols=24 Identities=38% Similarity=0.412 Sum_probs=20.9
Q ss_pred EEEEEecCCChhHHHHHHHHHHhh
Q 002220 211 TIGIWGMGGIGKTTLAGAVFKLIS 234 (951)
Q Consensus 211 vv~I~G~gGiGKTtLA~~~~~~~~ 234 (951)
+|.+.|++|+||||+|+.+.....
T Consensus 1 lii~~G~pgsGKSt~a~~l~~~~~ 24 (143)
T PF13671_consen 1 LIILCGPPGSGKSTLAKRLAKRLG 24 (143)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHST
T ss_pred CEEEECCCCCCHHHHHHHHHHHCC
Confidence 588999999999999999986543
No 332
>PRK10820 DNA-binding transcriptional regulator TyrR; Provisional
Probab=95.59 E-value=0.21 Score=58.04 Aligned_cols=49 Identities=18% Similarity=0.058 Sum_probs=36.8
Q ss_pred CCCCCcccchhhHHHHHHhhccCCCCcEEEEEEecCCChhHHHHHHHHH
Q 002220 183 TYSDGFVGLNSRIQKIKSLLCIGLPDFRTIGIWGMGGIGKTTLAGAVFK 231 (951)
Q Consensus 183 ~~~~~~vGr~~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~~~~ 231 (951)
...+.++|....+.++.+.+..-...-.-|.|+|..|+||+++|+.+..
T Consensus 201 ~~f~~~ig~s~~~~~~~~~~~~~A~~~~pvlI~GE~GtGK~~lA~aiH~ 249 (520)
T PRK10820 201 SAFSQIVAVSPKMRQVVEQARKLAMLDAPLLITGDTGTGKDLLAYACHL 249 (520)
T ss_pred ccccceeECCHHHHHHHHHHHHHhCCCCCEEEECCCCccHHHHHHHHHH
Confidence 3456899999988887766642222234588999999999999999765
No 333
>cd01124 KaiC KaiC is a circadian clock protein primarily found in cyanobacteria KaiC is a RecA-like ATPase, having both Walker A and Walker B motifs. A related protein is found in archaea.
Probab=95.58 E-value=0.056 Score=53.52 Aligned_cols=34 Identities=24% Similarity=0.111 Sum_probs=26.2
Q ss_pred EEEEEecCCChhHHHHHHHHHHhhccccceeecc
Q 002220 211 TIGIWGMGGIGKTTLAGAVFKLISREFEGKCFMP 244 (951)
Q Consensus 211 vv~I~G~gGiGKTtLA~~~~~~~~~~f~~~~~~~ 244 (951)
++.|.|.+|+|||+||.+++......-..++|+.
T Consensus 1 ~~li~G~~G~GKT~l~~~~~~~~~~~g~~v~~~s 34 (187)
T cd01124 1 STLLSGGPGTGKTTFALQFLYAGLARGEPGLYVT 34 (187)
T ss_pred CEEEEcCCCCCHHHHHHHHHHHHHHCCCcEEEEE
Confidence 3679999999999999999876544445566664
No 334
>cd02027 APSK Adenosine 5'-phosphosulfate kinase (APSK) catalyzes the phosphorylation of adenosine 5'-phosphosulfate to form 3'-phosphoadenosine 5'-phosphosulfate (PAPS). The end-product PAPS is a biologically "activated" sulfate form important for the assimilation of inorganic sulfate.
Probab=95.55 E-value=0.048 Score=51.60 Aligned_cols=24 Identities=33% Similarity=0.436 Sum_probs=21.4
Q ss_pred EEEEEecCCChhHHHHHHHHHHhh
Q 002220 211 TIGIWGMGGIGKTTLAGAVFKLIS 234 (951)
Q Consensus 211 vv~I~G~gGiGKTtLA~~~~~~~~ 234 (951)
+|.|+|.+|.||||+|+.+.....
T Consensus 1 ~i~i~G~~GsGKSTla~~L~~~l~ 24 (149)
T cd02027 1 VIWLTGLSGSGKSTIARALEEKLF 24 (149)
T ss_pred CEEEEcCCCCCHHHHHHHHHHHHH
Confidence 578999999999999999998664
No 335
>TIGR00416 sms DNA repair protein RadA. The gene protuct codes for a probable ATP-dependent protease involved in both DNA repair and degradation of proteins, peptides, glycopeptides. Also known as sms. Residues 11-28 of the SEED alignment contain a putative Zn binding domain. Residues 110-117 of the seed contain a putative ATP binding site both documented in Haemophilus and in Listeria monocytogenes. for E.coli see ( J. BACTERIOL. 178:5045-5048(1996)).
Probab=95.46 E-value=0.053 Score=61.35 Aligned_cols=50 Identities=24% Similarity=0.205 Sum_probs=37.0
Q ss_pred HHHHHHhhccCCCCcEEEEEEecCCChhHHHHHHHHHHhhccccceeecc
Q 002220 195 IQKIKSLLCIGLPDFRTIGIWGMGGIGKTTLAGAVFKLISREFEGKCFMP 244 (951)
Q Consensus 195 ~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~~~~~~~~~f~~~~~~~ 244 (951)
+.++.+.|..+-..-.++.|.|.+|+|||||+.+++......-..++|+.
T Consensus 80 i~~LD~vLgGGi~~GsvilI~G~pGsGKTTL~lq~a~~~a~~g~kvlYvs 129 (454)
T TIGR00416 80 FGELDRVLGGGIVPGSLILIGGDPGIGKSTLLLQVACQLAKNQMKVLYVS 129 (454)
T ss_pred cHHHHHHhcCCccCCeEEEEEcCCCCCHHHHHHHHHHHHHhcCCcEEEEE
Confidence 45666666544455679999999999999999999876655434566764
No 336
>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]
Probab=95.46 E-value=0.0022 Score=74.61 Aligned_cols=160 Identities=29% Similarity=0.364 Sum_probs=85.9
Q ss_pred CCCCCEEeccCCCCCCc--cchhcccCCCCcEEEcccC--CCccc----CccccCCCCCcEEeeccCCCCccCCcccCCc
Q 002220 768 LKSLGSLLLAFCSNLEG--FPEILEKMELLETLDLERT--GVKEL----PPSFENLQGLRQLSLIGCSELKCSGWVLPTR 839 (951)
Q Consensus 768 l~~L~~L~l~~~~~~~~--~~~~l~~l~~L~~L~l~~n--~i~~l----~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~ 839 (951)
+++|+.|.+.+|..... +-.....+++|+.|+++++ .+... ......+++|+.|+++.|......+ +...
T Consensus 187 ~~~L~~l~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~isd~~--l~~l 264 (482)
T KOG1947|consen 187 CPLLKRLSLSGCSKITDDSLDALALKCPNLEELDLSGCCLLITLSPLLLLLLLSICRKLKSLDLSGCGLVTDIG--LSAL 264 (482)
T ss_pred CchhhHhhhcccccCChhhHHHHHhhCchhheecccCcccccccchhHhhhhhhhcCCcCccchhhhhccCchh--HHHH
Confidence 45555555555554443 2234455566666666542 11111 1123455777777777777433222 2222
Q ss_pred CCCCCCCCEEeccCCC-CCC--cCccCCCCCCCCEEEccCCCC-c--ccchhhcCCCCCCEEeeCCCC---CCCcCC---
Q 002220 840 ISKLSSLERLQLSGCE-IKE--IPEDIDCLSSLEVLDLSGSKI-E--ILPTSIGQLSRLRQLNLLDCN---MLQSIP--- 907 (951)
Q Consensus 840 ~~~l~~L~~L~L~~~~-l~~--l~~~l~~l~~L~~L~L~~n~l-~--~l~~~l~~l~~L~~L~L~~~~---~l~~lp--- 907 (951)
...+++|+.|.+.+|. +++ +-.....+++|++|+|++|.. + .+.....++++|+.|.+..+. .++..-
T Consensus 265 ~~~c~~L~~L~l~~c~~lt~~gl~~i~~~~~~L~~L~l~~c~~~~d~~l~~~~~~c~~l~~l~~~~~~~c~~l~~~~l~~ 344 (482)
T KOG1947|consen 265 ASRCPNLETLSLSNCSNLTDEGLVSIAERCPSLRELDLSGCHGLTDSGLEALLKNCPNLRELKLLSLNGCPSLTDLSLSG 344 (482)
T ss_pred HhhCCCcceEccCCCCccchhHHHHHHHhcCcccEEeeecCccchHHHHHHHHHhCcchhhhhhhhcCCCccHHHHHHHH
Confidence 2336778888877776 443 333445677788888887733 2 233334557766666554443 333221
Q ss_pred --Ccc-ccccEeeeccCcccccCCC
Q 002220 908 --ELP-RGLLRLNAQNCRRLRSLPE 929 (951)
Q Consensus 908 --~~~-~~L~~L~i~~C~~L~~lp~ 929 (951)
... ..+..+.+.+|+.++.+..
T Consensus 345 ~~~~~~d~~~~~~~~~~~~l~~~~l 369 (482)
T KOG1947|consen 345 LLTLTSDDLAELILRSCPKLTDLSL 369 (482)
T ss_pred hhccCchhHhHHHHhcCCCcchhhh
Confidence 222 2667777777777765533
No 337
>KOG1969 consensus DNA replication checkpoint protein CHL12/CTF18 [Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=95.44 E-value=0.043 Score=62.61 Aligned_cols=76 Identities=20% Similarity=0.310 Sum_probs=45.0
Q ss_pred CCcEEEEEEecCCChhHHHHHHHHHHhhccccceeecccccchhcCCCChHHHHHHHHHHHhcCccccCCCCChHHHHHH
Q 002220 207 PDFRTIGIWGMGGIGKTTLAGAVFKLISREFEGKCFMPNVREESENGGGLVYLRDRVVSEIFQEDIKIGTPYLPDYIVER 286 (951)
Q Consensus 207 ~~~~vv~I~G~gGiGKTtLA~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~l~~~il~~l~~~~~~~~~~~~~~~l~~~ 286 (951)
+.-++..++|++|+||||||.-+++. ..|..+ =+ +. ++ ......+.+.|...+........
T Consensus 324 P~kKilLL~GppGlGKTTLAHViAkq--aGYsVv-EI-NA---SD-eRt~~~v~~kI~~avq~~s~l~a----------- 384 (877)
T KOG1969|consen 324 PPKKILLLCGPPGLGKTTLAHVIAKQ--AGYSVV-EI-NA---SD-ERTAPMVKEKIENAVQNHSVLDA----------- 384 (877)
T ss_pred CccceEEeecCCCCChhHHHHHHHHh--cCceEE-Ee-cc---cc-cccHHHHHHHHHHHHhhcccccc-----------
Confidence 55689999999999999999999874 233311 11 11 22 22333444444444332211111
Q ss_pred hcCCcEEEEEeCCCCh
Q 002220 287 LNRMKVLTVLDDVNKV 302 (951)
Q Consensus 287 l~~~~~LlVlDdv~~~ 302 (951)
.+++.-+|+|.++-.
T Consensus 385 -dsrP~CLViDEIDGa 399 (877)
T KOG1969|consen 385 -DSRPVCLVIDEIDGA 399 (877)
T ss_pred -CCCcceEEEecccCC
Confidence 157888999999754
No 338
>KOG0733 consensus Nuclear AAA ATPase (VCP subfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=95.43 E-value=0.1 Score=58.30 Aligned_cols=127 Identities=20% Similarity=0.212 Sum_probs=74.5
Q ss_pred cEEEEEEecCCChhHHHHHHHHHHhhccccceeecccccchhcCCCChHHHHHHHHHHHhcCccccCCCCCh--HHHHHH
Q 002220 209 FRTIGIWGMGGIGKTTLAGAVFKLISREFEGKCFMPNVREESENGGGLVYLRDRVVSEIFQEDIKIGTPYLP--DYIVER 286 (951)
Q Consensus 209 ~~vv~I~G~gGiGKTtLA~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~l~~~il~~l~~~~~~~~~~~~~--~~l~~~ 286 (951)
..=|.+||++|+|||-||++|+++-+.+|-.+= .+ .+......+ .+.+ ....+.
T Consensus 545 PsGvLL~GPPGCGKTLlAKAVANEag~NFisVK-----------GP---ELlNkYVGE----------SErAVR~vFqRA 600 (802)
T KOG0733|consen 545 PSGVLLCGPPGCGKTLLAKAVANEAGANFISVK-----------GP---ELLNKYVGE----------SERAVRQVFQRA 600 (802)
T ss_pred CCceEEeCCCCccHHHHHHHHhhhccCceEeec-----------CH---HHHHHHhhh----------HHHHHHHHHHHh
Confidence 456889999999999999999998877764210 00 111111100 0000 111222
Q ss_pred hcCCcEEEEEeCCCCh-------------HHHHHHHhccCCC--CCCCEEEEEeCCchhhhh-----cCCCccceEEcCC
Q 002220 287 LNRMKVLTVLDDVNKV-------------RQLHYLACVLDQF--GPGSRIIITTRDKRILDD-----FGVCDTDIYEVNK 346 (951)
Q Consensus 287 l~~~~~LlVlDdv~~~-------------~~~~~l~~~~~~~--~~gs~IlvTtR~~~v~~~-----~~~~~~~~~~l~~ 346 (951)
-..-+++|.||.++.. .-...++..+... ..|.-||-.|..+++... ...+ ...-|+.
T Consensus 601 R~saPCVIFFDEiDaL~p~R~~~~s~~s~RvvNqLLtElDGl~~R~gV~viaATNRPDiIDpAiLRPGRlD--k~LyV~l 678 (802)
T KOG0733|consen 601 RASAPCVIFFDEIDALVPRRSDEGSSVSSRVVNQLLTELDGLEERRGVYVIAATNRPDIIDPAILRPGRLD--KLLYVGL 678 (802)
T ss_pred hcCCCeEEEecchhhcCcccCCCCchhHHHHHHHHHHHhcccccccceEEEeecCCCcccchhhcCCCccC--ceeeecC
Confidence 2356899999998522 1144455444432 246667766655544222 1234 6778888
Q ss_pred CChhhhHHHHhhhhc
Q 002220 347 LRFHEALVLFSNFAF 361 (951)
Q Consensus 347 L~~~~a~~Lf~~~~~ 361 (951)
-+.+|-.+++....-
T Consensus 679 Pn~~eR~~ILK~~tk 693 (802)
T KOG0733|consen 679 PNAEERVAILKTITK 693 (802)
T ss_pred CCHHHHHHHHHHHhc
Confidence 888898888887764
No 339
>KOG4308 consensus LRR-containing protein [Function unknown]
Probab=95.43 E-value=0.00015 Score=81.64 Aligned_cols=163 Identities=28% Similarity=0.329 Sum_probs=79.1
Q ss_pred ccccCCCCcEEeccccccccccc----ccccCC-CCCCEEeccCCCCCCc----cchhcccCCCCcEEEcccCCCcc---
Q 002220 740 SIECLTNLETLDLRLCERLKRVS----TSICKL-KSLGSLLLAFCSNLEG----FPEILEKMELLETLDLERTGVKE--- 807 (951)
Q Consensus 740 ~l~~l~~L~~L~Ls~~~~~~~~~----~~~~~l-~~L~~L~l~~~~~~~~----~~~~l~~l~~L~~L~l~~n~i~~--- 807 (951)
.+.....|+.|++++|.+...-. ..+... ..|++|.+..|..... +...+...+.|+.++++.|.+..
T Consensus 110 ~l~t~~~L~~L~l~~n~l~~~g~~~l~~~l~~~~~~l~~L~l~~c~l~~~g~~~l~~~L~~~~~l~~l~l~~n~l~~~g~ 189 (478)
T KOG4308|consen 110 ALKTLPTLGQLDLSGNNLGDEGARLLCEGLRLPQCLLQTLELVSCSLTSEGAAPLAAVLEKNEHLTELDLSLNGLIELGL 189 (478)
T ss_pred HhcccccHhHhhcccCCCccHhHHHHHhhcccchHHHHHHHhhcccccccchHHHHHHHhcccchhHHHHHhcccchhhh
Confidence 34455566666666665542211 112222 3455555555554332 33444455666666666666531
Q ss_pred --cCcccc----CCCCCcEEeeccCCCCccCCcccCCcCCCCCC-CCEEeccCCCCCC-----cCccCCCC-CCCCEEEc
Q 002220 808 --LPPSFE----NLQGLRQLSLIGCSELKCSGWVLPTRISKLSS-LERLQLSGCEIKE-----IPEDIDCL-SSLEVLDL 874 (951)
Q Consensus 808 --l~~~~~----~l~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~-L~~L~L~~~~l~~-----l~~~l~~l-~~L~~L~L 874 (951)
++..+. ...++++|.+++|.........+...+...+. +..|++.+|.+.+ +...+..+ +.++.+++
T Consensus 190 ~~l~~~l~~~~~~~~~le~L~L~~~~~t~~~c~~l~~~l~~~~~~~~el~l~~n~l~d~g~~~L~~~l~~~~~~l~~l~l 269 (478)
T KOG4308|consen 190 LVLSQALESAASPLSSLETLKLSRCGVTSSSCALLDEVLASGESLLRELDLASNKLGDVGVEKLLPCLSVLSETLRVLDL 269 (478)
T ss_pred HHHhhhhhhhhcccccHHHHhhhhcCcChHHHHHHHHHHhccchhhHHHHHHhcCcchHHHHHHHHHhcccchhhhhhhh
Confidence 122222 34566666666666543221112222333334 5556666665553 23333344 45566666
Q ss_pred cCCCCc-----ccchhhcCCCCCCEEeeCCCCC
Q 002220 875 SGSKIE-----ILPTSIGQLSRLRQLNLLDCNM 902 (951)
Q Consensus 875 ~~n~l~-----~l~~~l~~l~~L~~L~L~~~~~ 902 (951)
+.|+|+ .+...+..+++++.+.++.|+.
T Consensus 270 ~~nsi~~~~~~~L~~~l~~~~~l~~l~l~~n~l 302 (478)
T KOG4308|consen 270 SRNSITEKGVRDLAEVLVSCRQLEELSLSNNPL 302 (478)
T ss_pred hcCCccccchHHHHHHHhhhHHHHHhhcccCcc
Confidence 666555 2334445555666666665544
No 340
>PTZ00301 uridine kinase; Provisional
Probab=95.42 E-value=0.014 Score=58.43 Aligned_cols=29 Identities=28% Similarity=0.447 Sum_probs=24.8
Q ss_pred cEEEEEEecCCChhHHHHHHHHHHhhccc
Q 002220 209 FRTIGIWGMGGIGKTTLAGAVFKLISREF 237 (951)
Q Consensus 209 ~~vv~I~G~gGiGKTtLA~~~~~~~~~~f 237 (951)
..+|+|.|.+|.||||||+.+.+++...+
T Consensus 3 ~~iIgIaG~SgSGKTTla~~l~~~l~~~~ 31 (210)
T PTZ00301 3 CTVIGISGASGSGKSSLSTNIVSELMAHC 31 (210)
T ss_pred CEEEEEECCCcCCHHHHHHHHHHHHHhhc
Confidence 46899999999999999999988775443
No 341
>PRK04040 adenylate kinase; Provisional
Probab=95.39 E-value=0.016 Score=57.11 Aligned_cols=29 Identities=21% Similarity=0.544 Sum_probs=24.4
Q ss_pred EEEEEEecCCChhHHHHHHHHHHhhcccc
Q 002220 210 RTIGIWGMGGIGKTTLAGAVFKLISREFE 238 (951)
Q Consensus 210 ~vv~I~G~gGiGKTtLA~~~~~~~~~~f~ 238 (951)
.+|+|+|++|+||||+++.+.+++...+.
T Consensus 3 ~~i~v~G~pG~GKtt~~~~l~~~l~~~~~ 31 (188)
T PRK04040 3 KVVVVTGVPGVGKTTVLNKALEKLKEDYK 31 (188)
T ss_pred eEEEEEeCCCCCHHHHHHHHHHHhccCCe
Confidence 68999999999999999999987742333
No 342
>cd02019 NK Nucleoside/nucleotide kinase (NK) is a protein superfamily consisting of multiple families of enzymes that share structural similarity and are functionally related to the catalysis of the reversible phosphate group transfer from nucleoside triphosphates to nucleosides/nucleotides, nucleoside monophosphates, or sugars. Members of this family play a wide variety of essential roles in nucleotide metabolism, the biosynthesis of coenzymes and aromatic compounds, as well as the metabolism of sugar and sulfate.
Probab=95.39 E-value=0.013 Score=46.91 Aligned_cols=23 Identities=35% Similarity=0.452 Sum_probs=21.0
Q ss_pred EEEEEecCCChhHHHHHHHHHHh
Q 002220 211 TIGIWGMGGIGKTTLAGAVFKLI 233 (951)
Q Consensus 211 vv~I~G~gGiGKTtLA~~~~~~~ 233 (951)
+|+|.|.+|.||||+|+.+.+.+
T Consensus 1 ~i~i~G~~gsGKst~~~~l~~~l 23 (69)
T cd02019 1 IIAITGGSGSGKSTVAKKLAEQL 23 (69)
T ss_pred CEEEECCCCCCHHHHHHHHHHHh
Confidence 47899999999999999999875
No 343
>PRK11823 DNA repair protein RadA; Provisional
Probab=95.38 E-value=0.057 Score=61.02 Aligned_cols=50 Identities=26% Similarity=0.210 Sum_probs=36.6
Q ss_pred HHHHHHhhccCCCCcEEEEEEecCCChhHHHHHHHHHHhhccccceeecc
Q 002220 195 IQKIKSLLCIGLPDFRTIGIWGMGGIGKTTLAGAVFKLISREFEGKCFMP 244 (951)
Q Consensus 195 ~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~~~~~~~~~f~~~~~~~ 244 (951)
+.++.+.|..+-..-.++.|.|.+|+|||||+.+++.....+-..++|+.
T Consensus 66 i~~LD~~LgGGi~~Gs~~lI~G~pG~GKTtL~lq~a~~~a~~g~~vlYvs 115 (446)
T PRK11823 66 IGELDRVLGGGLVPGSVVLIGGDPGIGKSTLLLQVAARLAAAGGKVLYVS 115 (446)
T ss_pred cHHHHHHhcCCccCCEEEEEECCCCCCHHHHHHHHHHHHHhcCCeEEEEE
Confidence 34566666544345679999999999999999999987654444566764
No 344
>COG0572 Udk Uridine kinase [Nucleotide transport and metabolism]
Probab=95.35 E-value=0.018 Score=56.79 Aligned_cols=30 Identities=37% Similarity=0.420 Sum_probs=26.6
Q ss_pred CCcEEEEEEecCCChhHHHHHHHHHHhhcc
Q 002220 207 PDFRTIGIWGMGGIGKTTLAGAVFKLISRE 236 (951)
Q Consensus 207 ~~~~vv~I~G~gGiGKTtLA~~~~~~~~~~ 236 (951)
..+.+|||.|.+|.||||+|+.++..+...
T Consensus 6 ~~~iiIgIaG~SgSGKTTva~~l~~~~~~~ 35 (218)
T COG0572 6 EKVIIIGIAGGSGSGKTTVAKELSEQLGVE 35 (218)
T ss_pred CceEEEEEeCCCCCCHHHHHHHHHHHhCcC
Confidence 456899999999999999999999988755
No 345
>PF08433 KTI12: Chromatin associated protein KTI12 ; InterPro: IPR013641 This is a family of chromatin associated proteins which interact with the Elongator complex, a component of the elongating form of RNA polymerase II []. The Elongator complex has histone acetyltransferase activity. ; PDB: 3ADB_B 3ADC_B 3A4M_B 3A4N_B 3AM1_A 3A4L_B 3ADD_A.
Probab=95.33 E-value=0.036 Score=57.86 Aligned_cols=26 Identities=31% Similarity=0.285 Sum_probs=20.4
Q ss_pred EEEEEEecCCChhHHHHHHHHHHhhc
Q 002220 210 RTIGIWGMGGIGKTTLAGAVFKLISR 235 (951)
Q Consensus 210 ~vv~I~G~gGiGKTtLA~~~~~~~~~ 235 (951)
..|.|+|.+|.||||+|+++...+..
T Consensus 2 pLiil~G~P~SGKTt~a~~L~~~~~~ 27 (270)
T PF08433_consen 2 PLIILCGLPCSGKTTRAKELKKYLEE 27 (270)
T ss_dssp -EEEEE--TTSSHHHHHHHHHHHHHH
T ss_pred EEEEEEcCCCCcHHHHHHHHHHHHHh
Confidence 46889999999999999999987655
No 346
>PF00910 RNA_helicase: RNA helicase; InterPro: IPR000605 Helicases have been classified in 5 superfamilies (SF1-SF5). All of the proteins bind ATP and, consequently, all of them carry the classical Walker A (phosphate-binding loop or P-loop) and Walker B (Mg2+-binding aspartic acid) motifs. Superfamily 3 consists of helicases encoded mainly by small DNA viruses and some large nucleocytoplasmic DNA viruses [, ]. Small viruses are very dependent on the host-cell machinery to replicate. SF3 helicase in small viruses is associated with an origin-binding domain. By pairing a domain that recognises the ori with a helicase, the virus can bypass the host-cell-based regulation pathway and initiate its own replication. The protein binds to the viral ori leading to origin unwinding. Cellular replication proteins are then recruited to the ori and the viral DNA is replicated. In SF3 helicases the Walker A and Walker B motifs are separated by spacers of rather uniform, and relatively short, length. In addition to the A and B motifs this family is characterised by a third motif (C) which resides between the B motif and the C terminus of the conserved region. This motif consists of an Asn residue preceded by a run of hydrophobic residues []. Several structures of SF3 helicases have been solved []. They all possess the same core alpha/beta fold, consisting of a five-stranded parallel beta sheet flanked on both sides by several alpha helices. In contrast to SF1 and SF2 helicases, which have RecA-like core folds, the strand connectivity within the alpha/beta core domain is that of AAA+ proteins []. The SF3 helicase proteins assemble into a hexameric ring. Some proteins known to contain an SF3 helicase domain are listed below: Polyomavirus large T antigen. It initiates DNA unwinding and replication via interactions with the viral origin of replication. Papillomavirus E1 protein. An ATP-dependent DNA helicase required for initiation of viral DNA replication. Parvovirus Rep/NS1 protein, which is also required for the initiation of viral replication. Poxviridae and other large DNA viruses D5 protein. Bacteriophage DNA primase/helicase protein. Bacterial prophage DNA primase/helicase protein. The entry represents the core alpha/beta fold of the SF3 helicase domain found predominantly in DNA viruses.; GO: 0003723 RNA binding, 0003724 RNA helicase activity
Probab=95.33 E-value=0.011 Score=52.32 Aligned_cols=26 Identities=42% Similarity=0.563 Sum_probs=21.8
Q ss_pred EEEEecCCChhHHHHHHHHHHhhccc
Q 002220 212 IGIWGMGGIGKTTLAGAVFKLISREF 237 (951)
Q Consensus 212 v~I~G~gGiGKTtLA~~~~~~~~~~f 237 (951)
|-|+|.+|+|||++|+.++..+.+.+
T Consensus 1 I~i~G~~G~GKS~l~~~l~~~l~~~~ 26 (107)
T PF00910_consen 1 IWIYGPPGIGKSTLAKELAKDLLKHI 26 (107)
T ss_pred CEEECCCCCCHHHHHHHHHHHHHHHh
Confidence 46899999999999999998665443
No 347
>KOG0739 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=95.28 E-value=0.3 Score=49.75 Aligned_cols=51 Identities=25% Similarity=0.299 Sum_probs=38.3
Q ss_pred CCcccchhhHHHHHHhhc----------cCCCCcEEEEEEecCCChhHHHHHHHHHHhhcc
Q 002220 186 DGFVGLNSRIQKIKSLLC----------IGLPDFRTIGIWGMGGIGKTTLAGAVFKLISRE 236 (951)
Q Consensus 186 ~~~vGr~~~~~~l~~~L~----------~~~~~~~vv~I~G~gGiGKTtLA~~~~~~~~~~ 236 (951)
.++-|.+...+.|.+... .....-+-|.++|++|.||+-||++|+......
T Consensus 133 sDVAGLE~AKeALKEAVILPIKFPqlFtGkR~PwrgiLLyGPPGTGKSYLAKAVATEAnST 193 (439)
T KOG0739|consen 133 SDVAGLEGAKEALKEAVILPIKFPQLFTGKRKPWRGILLYGPPGTGKSYLAKAVATEANST 193 (439)
T ss_pred hhhccchhHHHHHHhheeecccchhhhcCCCCcceeEEEeCCCCCcHHHHHHHHHhhcCCc
Confidence 467788888888877543 122335789999999999999999999855433
No 348
>PRK11388 DNA-binding transcriptional regulator DhaR; Provisional
Probab=95.27 E-value=0.24 Score=59.43 Aligned_cols=48 Identities=17% Similarity=0.169 Sum_probs=36.5
Q ss_pred CCCcccchhhHHHHHHhhccCCCCcEEEEEEecCCChhHHHHHHHHHH
Q 002220 185 SDGFVGLNSRIQKIKSLLCIGLPDFRTIGIWGMGGIGKTTLAGAVFKL 232 (951)
Q Consensus 185 ~~~~vGr~~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~~~~~ 232 (951)
.+.++|.+..+.++.+....-.....-|.|+|..|+||+++|+.+.+.
T Consensus 324 ~~~l~g~s~~~~~~~~~~~~~a~~~~pvli~Ge~GtGK~~~A~~ih~~ 371 (638)
T PRK11388 324 FDHMPQDSPQMRRLIHFGRQAAKSSFPVLLCGEEGVGKALLAQAIHNE 371 (638)
T ss_pred ccceEECCHHHHHHHHHHHHHhCcCCCEEEECCCCcCHHHHHHHHHHh
Confidence 456889888888777766432233345789999999999999999874
No 349
>cd03247 ABCC_cytochrome_bd The CYD subfamily implicated in cytochrome bd biogenesis. The CydC and CydD proteins are important for the formation of cytochrome bd terminal oxidase of E. coli and it has been proposed that they were necessary for biosynthesis of the cytochrome bd quinol oxidase and for periplasmic c-type cytochromes. CydCD were proposed to determine a heterooligomeric complex important for heme export into the periplasm or to be involved in the maintenance of the proper redox state of the periplasmic space. In Bacillus subtilius, the absence of CydCD does not affect the presence of halo-cytochrome c in the membrane and this observation suggests that CydCD proteins are not involved in the export of heme in this organism.
Probab=95.27 E-value=0.077 Score=52.05 Aligned_cols=25 Identities=28% Similarity=0.318 Sum_probs=21.9
Q ss_pred cEEEEEEecCCChhHHHHHHHHHHh
Q 002220 209 FRTIGIWGMGGIGKTTLAGAVFKLI 233 (951)
Q Consensus 209 ~~vv~I~G~gGiGKTtLA~~~~~~~ 233 (951)
-.+++|.|..|.|||||++.++-..
T Consensus 28 Ge~~~i~G~nGsGKStLl~~l~G~~ 52 (178)
T cd03247 28 GEKIALLGRSGSGKSTLLQLLTGDL 52 (178)
T ss_pred CCEEEEECCCCCCHHHHHHHHhccC
Confidence 4589999999999999999998643
No 350
>PRK13531 regulatory ATPase RavA; Provisional
Probab=95.26 E-value=0.032 Score=62.08 Aligned_cols=46 Identities=17% Similarity=0.162 Sum_probs=38.1
Q ss_pred CCCcccchhhHHHHHHhhccCCCCcEEEEEEecCCChhHHHHHHHHHHhh
Q 002220 185 SDGFVGLNSRIQKIKSLLCIGLPDFRTIGIWGMGGIGKTTLAGAVFKLIS 234 (951)
Q Consensus 185 ~~~~vGr~~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~~~~~~~ 234 (951)
...++||++.++.+...+..+ .-|.|.|++|+|||++|+.+.....
T Consensus 19 ~~~i~gre~vI~lll~aalag----~hVLL~GpPGTGKT~LAraLa~~~~ 64 (498)
T PRK13531 19 EKGLYERSHAIRLCLLAALSG----ESVFLLGPPGIAKSLIARRLKFAFQ 64 (498)
T ss_pred hhhccCcHHHHHHHHHHHccC----CCEEEECCCChhHHHHHHHHHHHhc
Confidence 456999999999988777533 3588999999999999999998653
No 351
>KOG0729 consensus 26S proteasome regulatory complex, ATPase RPT1 [Posttranslational modification, protein turnover, chaperones]
Probab=95.26 E-value=0.12 Score=51.37 Aligned_cols=49 Identities=24% Similarity=0.353 Sum_probs=34.5
Q ss_pred cccchhhHHHHHHhhc-----------cCCCCcEEEEEEecCCChhHHHHHHHHHHhhcc
Q 002220 188 FVGLNSRIQKIKSLLC-----------IGLPDFRTIGIWGMGGIGKTTLAGAVFKLISRE 236 (951)
Q Consensus 188 ~vGr~~~~~~l~~~L~-----------~~~~~~~vv~I~G~gGiGKTtLA~~~~~~~~~~ 236 (951)
+=|=.++++++.+... .+-+..+-|.++|++|.|||-+|++|+++....
T Consensus 179 vggckeqieklrevve~pll~perfv~lgidppkgvllygppgtgktl~aravanrtdac 238 (435)
T KOG0729|consen 179 VGGCKEQIEKLREVVELPLLHPERFVNLGIDPPKGVLLYGPPGTGKTLCARAVANRTDAC 238 (435)
T ss_pred ccchHHHHHHHHHHHhccccCHHHHhhcCCCCCCceEEeCCCCCchhHHHHHHhcccCce
Confidence 3455556666665442 122456778999999999999999999976443
No 352
>PTZ00088 adenylate kinase 1; Provisional
Probab=95.26 E-value=0.031 Score=56.86 Aligned_cols=23 Identities=35% Similarity=0.473 Sum_probs=20.7
Q ss_pred EEEEEecCCChhHHHHHHHHHHh
Q 002220 211 TIGIWGMGGIGKTTLAGAVFKLI 233 (951)
Q Consensus 211 vv~I~G~gGiGKTtLA~~~~~~~ 233 (951)
-|.|.|++|+||||+|+.+++++
T Consensus 8 rIvl~G~PGsGK~T~a~~La~~~ 30 (229)
T PTZ00088 8 KIVLFGAPGVGKGTFAEILSKKE 30 (229)
T ss_pred eEEEECCCCCCHHHHHHHHHHHh
Confidence 38899999999999999998865
No 353
>PRK12727 flagellar biosynthesis regulator FlhF; Provisional
Probab=95.24 E-value=0.1 Score=58.74 Aligned_cols=29 Identities=24% Similarity=0.253 Sum_probs=24.5
Q ss_pred CcEEEEEEecCCChhHHHHHHHHHHhhcc
Q 002220 208 DFRTIGIWGMGGIGKTTLAGAVFKLISRE 236 (951)
Q Consensus 208 ~~~vv~I~G~gGiGKTtLA~~~~~~~~~~ 236 (951)
...+|+|+|.+|+||||++.+++..+..+
T Consensus 349 ~G~vIaLVGPtGvGKTTtaakLAa~la~~ 377 (559)
T PRK12727 349 RGGVIALVGPTGAGKTTTIAKLAQRFAAQ 377 (559)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHHHHh
Confidence 35799999999999999999998765443
No 354
>cd03228 ABCC_MRP_Like The MRP (Mutidrug Resistance Protein)-like transporters are involved in drug, peptide, and lipid export. They belong to the subfamily C of the ATP-binding cassette (ABC) superfamily of transport proteins. The ABCC subfamily contains transporters with a diverse functional spectrum that includes ion transport, cell surface receptor, and toxin secretion activities. The MRP-like family, simlar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains, each composed of six transmembrane (TM) helices, and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=95.24 E-value=0.055 Score=52.65 Aligned_cols=120 Identities=19% Similarity=0.243 Sum_probs=59.0
Q ss_pred cEEEEEEecCCChhHHHHHHHHHHhhccccceeecccccchhcCCCChHHHHHHHHHHHhcCccc---------cCCCCC
Q 002220 209 FRTIGIWGMGGIGKTTLAGAVFKLISREFEGKCFMPNVREESENGGGLVYLRDRVVSEIFQEDIK---------IGTPYL 279 (951)
Q Consensus 209 ~~vv~I~G~gGiGKTtLA~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~l~~~il~~l~~~~~~---------~~~~~~ 279 (951)
-.+++|.|..|.|||||++.++..... ..+.+++.... ... .........+ .-+.+...- .+..+.
T Consensus 28 G~~~~l~G~nGsGKstLl~~i~G~~~~-~~G~i~~~g~~-~~~--~~~~~~~~~i-~~~~~~~~~~~~t~~e~lLS~G~~ 102 (171)
T cd03228 28 GEKVAIVGPSGSGKSTLLKLLLRLYDP-TSGEILIDGVD-LRD--LDLESLRKNI-AYVPQDPFLFSGTIRENILSGGQR 102 (171)
T ss_pred CCEEEEECCCCCCHHHHHHHHHcCCCC-CCCEEEECCEE-hhh--cCHHHHHhhE-EEEcCCchhccchHHHHhhCHHHH
Confidence 468999999999999999999874432 33444443211 000 0000000000 000000000 001111
Q ss_pred h-HHHHHHhcCCcEEEEEeCCC---ChHHHHHHHhccCCCCCCCEEEEEeCCchhhhh
Q 002220 280 P-DYIVERLNRMKVLTVLDDVN---KVRQLHYLACVLDQFGPGSRIIITTRDKRILDD 333 (951)
Q Consensus 280 ~-~~l~~~l~~~~~LlVlDdv~---~~~~~~~l~~~~~~~~~gs~IlvTtR~~~v~~~ 333 (951)
+ -.+.+.+..++-++++|+-. |....+.+...+.....+..||++|.+......
T Consensus 103 ~rl~la~al~~~p~llllDEP~~gLD~~~~~~l~~~l~~~~~~~tii~~sh~~~~~~~ 160 (171)
T cd03228 103 QRIAIARALLRDPPILILDEATSALDPETEALILEALRALAKGKTVIVIAHRLSTIRD 160 (171)
T ss_pred HHHHHHHHHhcCCCEEEEECCCcCCCHHHHHHHHHHHHHhcCCCEEEEEecCHHHHHh
Confidence 1 33455566778899999864 222222232222222235678888888776543
No 355
>COG2204 AtoC Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains [Signal transduction mechanisms]
Probab=95.23 E-value=2.5 Score=47.28 Aligned_cols=48 Identities=25% Similarity=0.387 Sum_probs=39.4
Q ss_pred CCCCcccchhhHHHHHHhhccCCCCcEEEEEEecCCChhHHHHHHHHH
Q 002220 184 YSDGFVGLNSRIQKIKSLLCIGLPDFRTIGIWGMGGIGKTTLAGAVFK 231 (951)
Q Consensus 184 ~~~~~vGr~~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~~~~ 231 (951)
....+||+...+.++.+.+..-.+.-.-|.|+|..|+||-.+|+.+-+
T Consensus 139 ~~~~liG~S~am~~l~~~i~kvA~s~a~VLI~GESGtGKElvAr~IH~ 186 (464)
T COG2204 139 LGGELVGESPAMQQLRRLIAKVAPSDASVLITGESGTGKELVARAIHQ 186 (464)
T ss_pred ccCCceecCHHHHHHHHHHHHHhCCCCCEEEECCCCCcHHHHHHHHHh
Confidence 467899999999999988864333445688999999999999999865
No 356
>PRK15424 propionate catabolism operon regulatory protein PrpR; Provisional
Probab=95.22 E-value=0.31 Score=56.09 Aligned_cols=48 Identities=17% Similarity=0.274 Sum_probs=38.8
Q ss_pred CCCcccchhhHHHHHHhhccCCCCcEEEEEEecCCChhHHHHHHHHHH
Q 002220 185 SDGFVGLNSRIQKIKSLLCIGLPDFRTIGIWGMGGIGKTTLAGAVFKL 232 (951)
Q Consensus 185 ~~~~vGr~~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~~~~~ 232 (951)
.+.++|....+.++.+.+..-......|.|.|..|+||+++|+.+.+.
T Consensus 218 f~~iiG~S~~m~~~~~~i~~~A~s~~pVLI~GE~GTGKe~~A~~IH~~ 265 (538)
T PRK15424 218 LGDLLGQSPQMEQVRQTILLYARSSAAVLIQGETGTGKELAAQAIHRE 265 (538)
T ss_pred hhheeeCCHHHHHHHHHHHHHhCCCCcEEEECCCCCCHHHHHHHHHHh
Confidence 345999999999888877533334467889999999999999999875
No 357
>PRK08233 hypothetical protein; Provisional
Probab=95.22 E-value=0.015 Score=57.32 Aligned_cols=26 Identities=31% Similarity=0.345 Sum_probs=23.0
Q ss_pred cEEEEEEecCCChhHHHHHHHHHHhh
Q 002220 209 FRTIGIWGMGGIGKTTLAGAVFKLIS 234 (951)
Q Consensus 209 ~~vv~I~G~gGiGKTtLA~~~~~~~~ 234 (951)
..+|+|.|.+|.||||+|+.++..+.
T Consensus 3 ~~iI~I~G~~GsGKtTla~~L~~~l~ 28 (182)
T PRK08233 3 TKIITIAAVSGGGKTTLTERLTHKLK 28 (182)
T ss_pred ceEEEEECCCCCCHHHHHHHHHhhCC
Confidence 47899999999999999999998653
No 358
>cd03238 ABC_UvrA The excision repair protein UvrA; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion. Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins, and UvrB having one ATP binding site that is structurally related to that of helicases.
Probab=95.19 E-value=0.11 Score=50.56 Aligned_cols=22 Identities=27% Similarity=0.356 Sum_probs=20.0
Q ss_pred cEEEEEEecCCChhHHHHHHHH
Q 002220 209 FRTIGIWGMGGIGKTTLAGAVF 230 (951)
Q Consensus 209 ~~vv~I~G~gGiGKTtLA~~~~ 230 (951)
-.+++|+|+.|.|||||.+.+.
T Consensus 21 G~~~~l~G~nG~GKSTLl~~il 42 (176)
T cd03238 21 NVLVVVTGVSGSGKSTLVNEGL 42 (176)
T ss_pred CCEEEEECCCCCCHHHHHHHHh
Confidence 4689999999999999999885
No 359
>TIGR00150 HI0065_YjeE ATPase, YjeE family. Members of this family have a conserved nucleotide-binding motif GXXGXGKT and a nucleotide-binding fold. Member protein YjeE of Haemophilus influenzae (HI0065) was shown to have ATPase activity.
Probab=95.18 E-value=0.028 Score=51.22 Aligned_cols=40 Identities=23% Similarity=0.186 Sum_probs=28.5
Q ss_pred hHHHHHHhhccCCCCcEEEEEEecCCChhHHHHHHHHHHh
Q 002220 194 RIQKIKSLLCIGLPDFRTIGIWGMGGIGKTTLAGAVFKLI 233 (951)
Q Consensus 194 ~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~~~~~~ 233 (951)
+..++.+.|...-....+|.+.|.-|.||||+++.++..+
T Consensus 7 ~t~~l~~~l~~~l~~~~~i~l~G~lGaGKTtl~~~l~~~l 46 (133)
T TIGR00150 7 AMDKFGKAFAKPLDFGTVVLLKGDLGAGKTTLVQGLLQGL 46 (133)
T ss_pred HHHHHHHHHHHhCCCCCEEEEEcCCCCCHHHHHHHHHHHc
Confidence 3444444443222344689999999999999999999854
No 360
>PRK05480 uridine/cytidine kinase; Provisional
Probab=95.16 E-value=0.019 Score=58.06 Aligned_cols=27 Identities=37% Similarity=0.517 Sum_probs=24.3
Q ss_pred CCcEEEEEEecCCChhHHHHHHHHHHh
Q 002220 207 PDFRTIGIWGMGGIGKTTLAGAVFKLI 233 (951)
Q Consensus 207 ~~~~vv~I~G~gGiGKTtLA~~~~~~~ 233 (951)
.+..+|+|.|.+|+||||||+.++..+
T Consensus 4 ~~~~iI~I~G~sGsGKTTl~~~l~~~l 30 (209)
T PRK05480 4 KKPIIIGIAGGSGSGKTTVASTIYEEL 30 (209)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHh
Confidence 356799999999999999999999876
No 361
>PRK03839 putative kinase; Provisional
Probab=95.14 E-value=0.016 Score=56.97 Aligned_cols=24 Identities=33% Similarity=0.497 Sum_probs=21.6
Q ss_pred EEEEEecCCChhHHHHHHHHHHhh
Q 002220 211 TIGIWGMGGIGKTTLAGAVFKLIS 234 (951)
Q Consensus 211 vv~I~G~gGiGKTtLA~~~~~~~~ 234 (951)
.|.|.|++|.||||+|+.+++++.
T Consensus 2 ~I~l~G~pGsGKsT~~~~La~~~~ 25 (180)
T PRK03839 2 IIAITGTPGVGKTTVSKLLAEKLG 25 (180)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhC
Confidence 488999999999999999998764
No 362
>PF03308 ArgK: ArgK protein; InterPro: IPR005129 Bacterial periplasmic transport systems require the function of a specific substrate-binding protein, located in the periplasm, and several cytoplasmic membrane transport components. In Escherichia coli, the arginine-ornithine transport system requires an arginine-ornithine-binding protein and the lysine-arginine-ornithine (LAO) transport system includes a LAO-binding protein. Both periplasmic proteins can be phosphorylated by a single kinase, ArgK [] resulting in reduced levels of transport activity of the periplasmic transport systems that include each of the binding proteins. The ArgK protein acts as an ATPase enzyme and as a kinase.; PDB: 3MD0_A 3P32_A 2QM7_A 2QM8_A 2WWW_D 2P67_A 3NXS_A.
Probab=95.12 E-value=0.036 Score=55.96 Aligned_cols=43 Identities=26% Similarity=0.316 Sum_probs=31.1
Q ss_pred hHHHHHHhhccCCCCcEEEEEEecCCChhHHHHHHHHHHhhcc
Q 002220 194 RIQKIKSLLCIGLPDFRTIGIWGMGGIGKTTLAGAVFKLISRE 236 (951)
Q Consensus 194 ~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~~~~~~~~~ 236 (951)
+..++.+.+.....+..+|+|.|+||.|||||.-++...++..
T Consensus 14 ~~~~ll~~l~~~~g~a~~iGiTG~PGaGKSTli~~l~~~~~~~ 56 (266)
T PF03308_consen 14 EARELLKRLYPHTGRAHVIGITGPPGAGKSTLIDALIRELRER 56 (266)
T ss_dssp HHHHHHHHHGGGTT-SEEEEEEE-TTSSHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHhhcCCceEEEeeCCCCCcHHHHHHHHHHHHhhc
Confidence 3445555554445567899999999999999999998876654
No 363
>cd01394 radB RadB. The archaeal protein radB shares similarity radA, the archaeal functional homologue to the bacterial RecA. The precise function of radB is unclear.
Probab=95.12 E-value=0.035 Score=56.60 Aligned_cols=49 Identities=18% Similarity=0.219 Sum_probs=36.4
Q ss_pred HHHHHhhccCCCCcEEEEEEecCCChhHHHHHHHHHHhhccccceeecc
Q 002220 196 QKIKSLLCIGLPDFRTIGIWGMGGIGKTTLAGAVFKLISREFEGKCFMP 244 (951)
Q Consensus 196 ~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~~~~~~~~~f~~~~~~~ 244 (951)
..|.++|..+-..-.++.|+|.+|+||||+|.+++.....+-..++|+.
T Consensus 6 ~~LD~~l~GGi~~g~i~~i~G~~GsGKT~l~~~~a~~~~~~g~~v~yi~ 54 (218)
T cd01394 6 KGLDELLGGGVERGTVTQVYGPPGTGKTNIAIQLAVETAGQGKKVAYID 54 (218)
T ss_pred hHHHHHhcCCccCCeEEEEECCCCCCHHHHHHHHHHHHHhcCCeEEEEE
Confidence 4455666434355689999999999999999999987655545566764
No 364
>TIGR02237 recomb_radB DNA repair and recombination protein RadB. This family consists exclusively of archaeal RadB protein, a homolog of bacterial RecA (TIGR02012), eukaryotic RAD51 (TIGR02239) and DMC1 (TIGR02238), and archaeal RadA (TIGR02236).
Probab=95.10 E-value=0.026 Score=57.09 Aligned_cols=44 Identities=23% Similarity=0.232 Sum_probs=34.3
Q ss_pred hhccCCCCcEEEEEEecCCChhHHHHHHHHHHhhccccceeecc
Q 002220 201 LLCIGLPDFRTIGIWGMGGIGKTTLAGAVFKLISREFEGKCFMP 244 (951)
Q Consensus 201 ~L~~~~~~~~vv~I~G~gGiGKTtLA~~~~~~~~~~f~~~~~~~ 244 (951)
+|..+-+.-+++.|+|.+|.|||++|.+++......-..++|++
T Consensus 4 ~l~GGi~~g~i~~i~G~~GsGKT~l~~~~~~~~~~~g~~v~yi~ 47 (209)
T TIGR02237 4 LLGGGVERGTITQIYGPPGSGKTNICMILAVNAARQGKKVVYID 47 (209)
T ss_pred hhcCCCCCCeEEEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEE
Confidence 34333355689999999999999999999887655566788885
No 365
>PF10137 TIR-like: Predicted nucleotide-binding protein containing TIR-like domain; InterPro: IPR019302 This entry represents a TIR-like domain found in a family of prokaryotic predicted nucleotide-binding proteins. Their exact function has not, as yet, been defined.
Probab=95.10 E-value=0.06 Score=48.41 Aligned_cols=61 Identities=20% Similarity=0.253 Sum_probs=52.4
Q ss_pred EEEcccccccccchHHHHHHHHHhCCCeEEecCcccCCCCCchHHHHHHhhccceEEEEecCCc
Q 002220 13 VFLSFRGEDTRDNFTSHLYAALCRKKIKTFIDDEELRRGDDISPALLNAIQGSKISVIIFSKDY 76 (951)
Q Consensus 13 vfis~~~~d~~~~~~~~l~~~L~~~g~~~~~d~~~~~~g~~~~~~~~~~i~~s~~~i~v~s~~~ 76 (951)
|||.|. +| ..++..+...|+..|+.+.+=.+....|..+.+.+.+++.++..+|++++|+=
T Consensus 2 VFIvhg-~~--~~~~~~v~~~L~~~~~ep~i~~~~~~~g~tiie~le~~~~~~~faIvl~TpDD 62 (125)
T PF10137_consen 2 VFIVHG-RD--LAAAEAVERFLEKLGLEPIIWHEQPNLGQTIIEKLEEAADSVDFAIVLFTPDD 62 (125)
T ss_pred EEEEeC-CC--HHHHHHHHHHHHhCCCceEEeecCCCCCCchHHHHHHHhccCCEEEEEEcccc
Confidence 899996 66 47899999999988887765554568899999999999999999999999853
No 366
>PF06068 TIP49: TIP49 C-terminus; InterPro: IPR010339 This family consists of the C-terminal region of several eukaryotic and archaeal RuvB-like 1 (Pontin or TIP49a) and RuvB-like 2 (Reptin or TIP49b) proteins. The N-terminal domain contains the AAA ATPase, central region IPR003959 from INTERPRO domain. In zebrafish, the liebeskummer (lik) mutation, causes development of hyperplastic embryonic hearts. lik encodes Reptin, a component of a DNA-stimulated ATPase complex. Beta-catenin and Pontin, a DNA-stimulated ATPase that is often part of complexes with Reptin, are in the same genetic pathways. The Reptin/Pontin ratio serves to regulate heart growth during development, at least in part via the beta-catenin pathway []. TBP-interacting protein 49 (TIP49) was originally identified as a TBP-binding protein, and two related proteins are encoded by individual genes, tip49a and b. Although the function of this gene family has not been elucidated, they are supposed to play a critical role in nuclear events because they interact with various kinds of nuclear factors and have DNA helicase activities. TIP49a has been suggested to act as an autoantigen in some patients with autoimmune diseases [].; GO: 0003678 DNA helicase activity, 0005524 ATP binding; PDB: 2XSZ_E 2CQA_A 2C9O_C.
Probab=95.08 E-value=0.036 Score=58.82 Aligned_cols=60 Identities=30% Similarity=0.292 Sum_probs=42.2
Q ss_pred CCCCCcccchhhHHH---HHHhhccCCCCcEEEEEEecCCChhHHHHHHHHHHhhccccceee
Q 002220 183 TYSDGFVGLNSRIQK---IKSLLCIGLPDFRTIGIWGMGGIGKTTLAGAVFKLISREFEGKCF 242 (951)
Q Consensus 183 ~~~~~~vGr~~~~~~---l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~~~~~~~~~f~~~~~ 242 (951)
...+.+||..+..+. +.+++..+.-.-+.|.+.|++|.|||+||..+++.+..+.+.+..
T Consensus 21 ~~~~GlVGQ~~AReAagiiv~mIk~~K~aGr~iLiaGppGtGKTAlA~~ia~eLG~~~PF~~i 83 (398)
T PF06068_consen 21 YIADGLVGQEKAREAAGIIVDMIKEGKIAGRAILIAGPPGTGKTALAMAIAKELGEDVPFVSI 83 (398)
T ss_dssp SEETTEES-HHHHHHHHHHHHHHHTT--TT-EEEEEE-TTSSHHHHHHHHHHHCTTTS-EEEE
T ss_pred eccccccChHHHHHHHHHHHHHHhcccccCcEEEEeCCCCCCchHHHHHHHHHhCCCCCeeEc
Confidence 345789999887665 455555444446899999999999999999999999888775544
No 367
>PRK00625 shikimate kinase; Provisional
Probab=95.08 E-value=0.017 Score=55.89 Aligned_cols=24 Identities=33% Similarity=0.524 Sum_probs=21.4
Q ss_pred EEEEEecCCChhHHHHHHHHHHhh
Q 002220 211 TIGIWGMGGIGKTTLAGAVFKLIS 234 (951)
Q Consensus 211 vv~I~G~gGiGKTtLA~~~~~~~~ 234 (951)
.|.|+|++|+||||+|+.++++..
T Consensus 2 ~I~LiG~pGsGKTT~~k~La~~l~ 25 (173)
T PRK00625 2 QIFLCGLPTVGKTSFGKALAKFLS 25 (173)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhC
Confidence 478999999999999999998764
No 368
>TIGR03574 selen_PSTK L-seryl-tRNA(Sec) kinase, archaeal. Members of this protein are L-seryl-tRNA(Sec) kinase. This enzyme is part of a two-step pathway in Eukaryota and Archaea for performing selenocysteine biosynthesis by changing serine misacylated on selenocysteine-tRNA to selenocysteine. This enzyme performs the first step, phosphorylation of the OH group of the serine side chain. This family represents archaeal proteins with this activity.
Probab=95.04 E-value=0.053 Score=56.53 Aligned_cols=26 Identities=31% Similarity=0.488 Sum_probs=22.3
Q ss_pred EEEEEecCCChhHHHHHHHHHHhhcc
Q 002220 211 TIGIWGMGGIGKTTLAGAVFKLISRE 236 (951)
Q Consensus 211 vv~I~G~gGiGKTtLA~~~~~~~~~~ 236 (951)
.|.++|++|.||||+|++++..+...
T Consensus 1 LIvl~G~pGSGKST~a~~La~~l~~~ 26 (249)
T TIGR03574 1 LIILTGLPGVGKSTFSKELAKKLSEK 26 (249)
T ss_pred CEEEEcCCCCCHHHHHHHHHHHHHHc
Confidence 37899999999999999999876543
No 369
>PF00437 T2SE: Type II/IV secretion system protein; InterPro: IPR001482 A number of bacterial proteins, some of which are involved in a general secretion pathway (GSP) for the export of proteins (also called the type II pathway) belong to this group [, ]. These proteins are probably located in the cytoplasm and, on the basis of the presence of a conserved P-loop region IPR001687 from INTERPRO, bind ATP.; GO: 0005524 ATP binding, 0006810 transport, 0005622 intracellular; PDB: 1NLZ_C 2PT7_B 1OPX_A 1NLY_A 1G6O_B 2OAQ_2 2OAP_1 2JNQ_A 2JMZ_A 2GZA_B ....
Probab=95.03 E-value=0.028 Score=59.42 Aligned_cols=126 Identities=18% Similarity=0.129 Sum_probs=69.9
Q ss_pred CCcccchhhHHHHHHhhccCCCCcEEEEEEecCCChhHHHHHHHHHHhhccccceeecccccchhcCCCChHHHHHHHHH
Q 002220 186 DGFVGLNSRIQKIKSLLCIGLPDFRTIGIWGMGGIGKTTLAGAVFKLISREFEGKCFMPNVREESENGGGLVYLRDRVVS 265 (951)
Q Consensus 186 ~~~vGr~~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~l~~~il~ 265 (951)
+.+.-.....+++.++|...-...+.|.|.|..|.||||++..+...+...-..++-+.+..+..- .
T Consensus 104 e~l~~~~~~~~~~~~~l~~~v~~~~~ili~G~tGSGKTT~l~all~~i~~~~~~iv~iEd~~E~~l-------------~ 170 (270)
T PF00437_consen 104 EDLGESGSIPEEIAEFLRSAVRGRGNILISGPTGSGKTTLLNALLEEIPPEDERIVTIEDPPELRL-------------P 170 (270)
T ss_dssp CCCCHTHHCHHHHHHHHHHCHHTTEEEEEEESTTSSHHHHHHHHHHHCHTTTSEEEEEESSS-S---------------S
T ss_pred hhccCchhhHHHHHHHHhhccccceEEEEECCCccccchHHHHHhhhccccccceEEeccccceee-------------c
Confidence 344433444456666664332345899999999999999999999876555122333332222111 0
Q ss_pred HHhcCcccc-CCCCCh-HHHHHHhcCCcEEEEEeCCCChHHHHHHHhccCCCCCCCEE-EEEeCCc
Q 002220 266 EIFQEDIKI-GTPYLP-DYIVERLNRMKVLTVLDDVNKVRQLHYLACVLDQFGPGSRI-IITTRDK 328 (951)
Q Consensus 266 ~l~~~~~~~-~~~~~~-~~l~~~l~~~~~LlVlDdv~~~~~~~~l~~~~~~~~~gs~I-lvTtR~~ 328 (951)
......... ...... +.++..|+..+=.+|++.+.+.+....+... ..|..+ +.|....
T Consensus 171 ~~~~~~~~~~~~~~~~~~~l~~~LR~~pD~iiigEiR~~e~~~~~~a~----~tGh~~~~tT~Ha~ 232 (270)
T PF00437_consen 171 GPNQIQIQTRRDEISYEDLLKSALRQDPDVIIIGEIRDPEAAEAIQAA----NTGHLGSLTTLHAN 232 (270)
T ss_dssp CSSEEEEEEETTTBSHHHHHHHHTTS--SEEEESCE-SCHHHHHHHHH----HTT-EEEEEEEE-S
T ss_pred ccceEEEEeecCcccHHHHHHHHhcCCCCcccccccCCHhHHHHHHhh----ccCCceeeeeeecC
Confidence 000000000 122222 7788888988889999999998887764433 356667 5555443
No 370
>KOG0734 consensus AAA+-type ATPase containing the peptidase M41 domain [Posttranslational modification, protein turnover, chaperones]
Probab=95.01 E-value=0.1 Score=57.30 Aligned_cols=48 Identities=25% Similarity=0.210 Sum_probs=34.5
Q ss_pred CCCcccchhh---HHHHHHhhccCC-------CCcEEEEEEecCCChhHHHHHHHHHH
Q 002220 185 SDGFVGLNSR---IQKIKSLLCIGL-------PDFRTIGIWGMGGIGKTTLAGAVFKL 232 (951)
Q Consensus 185 ~~~~vGr~~~---~~~l~~~L~~~~-------~~~~vv~I~G~gGiGKTtLA~~~~~~ 232 (951)
.+++-|.|+. +++|.+.|.... .=++=|.++|++|.|||-||++++-+
T Consensus 303 F~dVkG~DEAK~ELeEiVefLkdP~kftrLGGKLPKGVLLvGPPGTGKTlLARAvAGE 360 (752)
T KOG0734|consen 303 FEDVKGVDEAKQELEEIVEFLKDPTKFTRLGGKLPKGVLLVGPPGTGKTLLARAVAGE 360 (752)
T ss_pred cccccChHHHHHHHHHHHHHhcCcHHhhhccCcCCCceEEeCCCCCchhHHHHHhhcc
Confidence 3456777764 555666664321 22567999999999999999999864
No 371
>cd03115 SRP The signal recognition particle (SRP) mediates the transport to or across the plasma membrane in bacteria and the endoplasmic reticulum in eukaryotes. SRP recognizes N-terminal sighnal sequences of newly synthesized polypeptides at the ribosome. The SRP-polypeptide complex is then targeted to the membrane by an interaction between SRP and its cognated receptor (SR). In mammals, SRP consists of six protein subunits and a 7SL RNA. One of these subunits is a 54 kd protein (SRP54), which is a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 is a multidomain protein that consists of an N-terminal domain, followed by a central G (GTPase) domain and a C-terminal M domain.
Probab=94.98 E-value=0.16 Score=49.54 Aligned_cols=26 Identities=31% Similarity=0.489 Sum_probs=23.0
Q ss_pred EEEEEecCCChhHHHHHHHHHHhhcc
Q 002220 211 TIGIWGMGGIGKTTLAGAVFKLISRE 236 (951)
Q Consensus 211 vv~I~G~gGiGKTtLA~~~~~~~~~~ 236 (951)
++.++|++|.||||+++.++..+...
T Consensus 2 ~~~~~G~~G~GKTt~~~~la~~~~~~ 27 (173)
T cd03115 2 VILLVGLQGVGKTTTAAKLALYLKKK 27 (173)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHC
Confidence 67899999999999999999877655
No 372
>TIGR02858 spore_III_AA stage III sporulation protein AA. Members of this protein are the stage III sporulation protein AA, encoded by one of several genes in the spoIIIA locus. It seems that this protein is found in a species if and only if that species is capable of endospore formation.
Probab=94.97 E-value=0.088 Score=54.91 Aligned_cols=118 Identities=17% Similarity=0.131 Sum_probs=63.8
Q ss_pred CcEEEEEEecCCChhHHHHHHHHHHhhccccceeecccccchhcCCCChHHHHHHHHHHHhcCcccc-----CCCCChHH
Q 002220 208 DFRTIGIWGMGGIGKTTLAGAVFKLISREFEGKCFMPNVREESENGGGLVYLRDRVVSEIFQEDIKI-----GTPYLPDY 282 (951)
Q Consensus 208 ~~~vv~I~G~gGiGKTtLA~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~l~~~il~~l~~~~~~~-----~~~~~~~~ 282 (951)
+..-++|+|..|.|||||.+.++..+... .+.+++... .... ......+... ...+.+..... ........
T Consensus 110 ~~~~~~i~g~~g~GKttl~~~l~~~~~~~-~G~i~~~g~-~v~~-~d~~~ei~~~-~~~~~q~~~~~r~~v~~~~~k~~~ 185 (270)
T TIGR02858 110 RVLNTLIISPPQCGKTTLLRDLARILSTG-ISQLGLRGK-KVGI-VDERSEIAGC-VNGVPQHDVGIRTDVLDGCPKAEG 185 (270)
T ss_pred CeeEEEEEcCCCCCHHHHHHHHhCccCCC-CceEEECCE-Eeec-chhHHHHHHH-hcccccccccccccccccchHHHH
Confidence 35789999999999999999999766543 233333211 0000 0001111111 11111111000 00001122
Q ss_pred HHHHhc-CCcEEEEEeCCCChHHHHHHHhccCCCCCCCEEEEEeCCchhhh
Q 002220 283 IVERLN-RMKVLTVLDDVNKVRQLHYLACVLDQFGPGSRIIITTRDKRILD 332 (951)
Q Consensus 283 l~~~l~-~~~~LlVlDdv~~~~~~~~l~~~~~~~~~gs~IlvTtR~~~v~~ 332 (951)
+...+. ..+=++|+|.+...+.+..+...+. .|..||+||-+..+..
T Consensus 186 ~~~~i~~~~P~villDE~~~~e~~~~l~~~~~---~G~~vI~ttH~~~~~~ 233 (270)
T TIGR02858 186 MMMLIRSMSPDVIVVDEIGREEDVEALLEALH---AGVSIIATAHGRDVED 233 (270)
T ss_pred HHHHHHhCCCCEEEEeCCCcHHHHHHHHHHHh---CCCEEEEEechhHHHH
Confidence 333333 5788999999988777776665543 4778999998766533
No 373
>KOG0651 consensus 26S proteasome regulatory complex, ATPase RPT4 [Posttranslational modification, protein turnover, chaperones]
Probab=94.96 E-value=0.11 Score=53.35 Aligned_cols=31 Identities=32% Similarity=0.380 Sum_probs=27.1
Q ss_pred CcEEEEEEecCCChhHHHHHHHHHHhhcccc
Q 002220 208 DFRTIGIWGMGGIGKTTLAGAVFKLISREFE 238 (951)
Q Consensus 208 ~~~vv~I~G~gGiGKTtLA~~~~~~~~~~f~ 238 (951)
.+..++|||++|.|||-+|+.|+..+.-+|-
T Consensus 165 ~Pkg~ll~GppGtGKTlla~~Vaa~mg~nfl 195 (388)
T KOG0651|consen 165 PPKGLLLYGPPGTGKTLLARAVAATMGVNFL 195 (388)
T ss_pred CCceeEEeCCCCCchhHHHHHHHHhcCCceE
Confidence 4678999999999999999999998776664
No 374
>cd00267 ABC_ATPase ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=94.95 E-value=0.041 Score=52.72 Aligned_cols=115 Identities=19% Similarity=0.176 Sum_probs=59.7
Q ss_pred EEEEEEecCCChhHHHHHHHHHHhhccccceeecccccchhcCCCChHHHHHHHHHHHhcCccccCCCCCh-HHHHHHhc
Q 002220 210 RTIGIWGMGGIGKTTLAGAVFKLISREFEGKCFMPNVREESENGGGLVYLRDRVVSEIFQEDIKIGTPYLP-DYIVERLN 288 (951)
Q Consensus 210 ~vv~I~G~gGiGKTtLA~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~l~~~il~~l~~~~~~~~~~~~~-~~l~~~l~ 288 (951)
.+++|.|..|.|||||++.++..+. ...+.+++.... .. ...... ....+.--. ..+..+.. -.+...+.
T Consensus 26 ~~~~i~G~nGsGKStll~~l~g~~~-~~~G~i~~~~~~-~~--~~~~~~----~~~~i~~~~-qlS~G~~~r~~l~~~l~ 96 (157)
T cd00267 26 EIVALVGPNGSGKSTLLRAIAGLLK-PTSGEILIDGKD-IA--KLPLEE----LRRRIGYVP-QLSGGQRQRVALARALL 96 (157)
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCC-CCccEEEECCEE-cc--cCCHHH----HHhceEEEe-eCCHHHHHHHHHHHHHh
Confidence 6899999999999999999987543 234445543211 00 000001 101100000 01111111 34555566
Q ss_pred CCcEEEEEeCCC---ChHHHHHHHhccCCC-CCCCEEEEEeCCchhhhh
Q 002220 289 RMKVLTVLDDVN---KVRQLHYLACVLDQF-GPGSRIIITTRDKRILDD 333 (951)
Q Consensus 289 ~~~~LlVlDdv~---~~~~~~~l~~~~~~~-~~gs~IlvTtR~~~v~~~ 333 (951)
..+-++++|+.. |......+...+... ..+..++++|.+......
T Consensus 97 ~~~~i~ilDEp~~~lD~~~~~~l~~~l~~~~~~~~tii~~sh~~~~~~~ 145 (157)
T cd00267 97 LNPDLLLLDEPTSGLDPASRERLLELLRELAEEGRTVIIVTHDPELAEL 145 (157)
T ss_pred cCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHH
Confidence 678899999874 333333332222211 225678888887766554
No 375
>TIGR02915 PEP_resp_reg putative PEP-CTERM system response regulator. Members of this protein family share full-length homology with (but do not include) the acetoacetate metabolism regulatory protein AtoC. These proteins have a Fis family DNA binding sequence (pfam02954), a response regulator receiver domain (pfam00072), and sigma-54 interaction domain (pfam00158).
Probab=94.95 E-value=0.31 Score=55.90 Aligned_cols=47 Identities=30% Similarity=0.347 Sum_probs=34.9
Q ss_pred CCcccchhhHHHHHHhhccCCCCcEEEEEEecCCChhHHHHHHHHHH
Q 002220 186 DGFVGLNSRIQKIKSLLCIGLPDFRTIGIWGMGGIGKTTLAGAVFKL 232 (951)
Q Consensus 186 ~~~vGr~~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~~~~~ 232 (951)
..++|....++++...+..-......|.|.|..|+||+++|+.+...
T Consensus 139 ~~lig~s~~~~~l~~~i~~~a~~~~~vli~Ge~GtGK~~lA~~ih~~ 185 (445)
T TIGR02915 139 RGLITSSPGMQKICRTIEKIAPSDITVLLLGESGTGKEVLARALHQL 185 (445)
T ss_pred cceeecCHHHHHHHHHHHHHhCCCCCEEEECCCCcCHHHHHHHHHHh
Confidence 45889888888877766432222344669999999999999998763
No 376
>cd01122 GP4d_helicase GP4d_helicase is a homohexameric 5'-3' helicases. Helicases couple NTP hydrolysis to the unwinding of nucleic acid duplexes into their component strands.
Probab=94.94 E-value=0.15 Score=53.96 Aligned_cols=37 Identities=16% Similarity=-0.040 Sum_probs=28.3
Q ss_pred CcEEEEEEecCCChhHHHHHHHHHHhhcc-ccceeecc
Q 002220 208 DFRTIGIWGMGGIGKTTLAGAVFKLISRE-FEGKCFMP 244 (951)
Q Consensus 208 ~~~vv~I~G~gGiGKTtLA~~~~~~~~~~-f~~~~~~~ 244 (951)
.-.++.|.|.+|+||||+|.+++.....+ -..++|+.
T Consensus 29 ~g~~~~i~g~~G~GKT~l~~~~~~~~~~~~g~~vl~iS 66 (271)
T cd01122 29 KGELIILTAGTGVGKTTFLREYALDLITQHGVRVGTIS 66 (271)
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHHHHHHhcCceEEEEE
Confidence 44688899999999999999998765444 34566663
No 377
>cd03230 ABC_DR_subfamily_A This family of ATP-binding proteins belongs to a multisubunit transporter involved in drug resistance (BcrA and DrrA), nodulation, lipid transport, and lantibiotic immunity. In bacteria and archaea, these transporters usually include an ATP-binding protein and one or two integral membrane proteins. Eukaryote systems of the ABCA subfamily display ABC domains that are quite similar to this family. The ATP-binding domain shows the highest similarity between all members of the ABC transporter family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=94.93 E-value=0.073 Score=51.89 Aligned_cols=119 Identities=16% Similarity=0.157 Sum_probs=58.9
Q ss_pred cEEEEEEecCCChhHHHHHHHHHHhhccccceeecccccchhcCCCChHHHHHHHHHHHhcCccc-----------cCCC
Q 002220 209 FRTIGIWGMGGIGKTTLAGAVFKLISREFEGKCFMPNVREESENGGGLVYLRDRVVSEIFQEDIK-----------IGTP 277 (951)
Q Consensus 209 ~~vv~I~G~gGiGKTtLA~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~l~~~il~~l~~~~~~-----------~~~~ 277 (951)
-.+++|.|..|.|||||++.++..... ..+.+++.... ... .. ....+.+ .-+.+...- .+..
T Consensus 26 Ge~~~i~G~nGsGKStLl~~l~G~~~~-~~G~i~~~g~~-~~~--~~-~~~~~~i-~~~~q~~~~~~~~tv~~~~~LS~G 99 (173)
T cd03230 26 GEIYGLLGPNGAGKTTLIKIILGLLKP-DSGEIKVLGKD-IKK--EP-EEVKRRI-GYLPEEPSLYENLTVRENLKLSGG 99 (173)
T ss_pred CcEEEEECCCCCCHHHHHHHHhCCCCC-CCeEEEECCEE-ccc--ch-HhhhccE-EEEecCCccccCCcHHHHhhcCHH
Confidence 468999999999999999998864322 23344432110 000 00 0000000 000000000 1111
Q ss_pred CCh-HHHHHHhcCCcEEEEEeCCC---ChHHHHHHHhccCCC-CCCCEEEEEeCCchhhhh
Q 002220 278 YLP-DYIVERLNRMKVLTVLDDVN---KVRQLHYLACVLDQF-GPGSRIIITTRDKRILDD 333 (951)
Q Consensus 278 ~~~-~~l~~~l~~~~~LlVlDdv~---~~~~~~~l~~~~~~~-~~gs~IlvTtR~~~v~~~ 333 (951)
+.+ -.+.+.+..++=++++|+.. |....+.+...+... ..|..||++|.+......
T Consensus 100 ~~qrv~laral~~~p~illlDEPt~~LD~~~~~~l~~~l~~~~~~g~tiii~th~~~~~~~ 160 (173)
T cd03230 100 MKQRLALAQALLHDPELLILDEPTSGLDPESRREFWELLRELKKEGKTILLSSHILEEAER 160 (173)
T ss_pred HHHHHHHHHHHHcCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHCCCEEEEECCCHHHHHH
Confidence 112 34556667788899999873 222222222222211 236778888888765543
No 378
>PF00406 ADK: Adenylate kinase; InterPro: IPR000850 Adenylate kinases (ADK) are phosphotransferases that catalyse the reversible reaction AMP + MgATP = ADP + MgADP an essential reaction for many processes in living cells. Two ADK isozymes have been identified in mammalian cells. These specifically bind AMP and favour binding to ATP over other nucleotide triphosphates (AK1 is cytosolic and AK2 is located in the mitochondria). A third ADK has been identified in bovine heart and human cells [], this is a mitochondrial GTP:AMP phosphotransferase, also specific for the phosphorylation of AMP, but can only use GTP or ITP as a substrate []. ADK has also been identified in different bacterial species and in yeast []. Two further enzymes are known to be related to the ADK family, i.e. yeast uridine monophosphokinase and slime mold UMP-CMP kinase. Within the ADK family there are several conserved regions, including the ATP-binding domains. One of the most conserved areas includes an Arg residue, whose modification inactivates the enzyme, together with an Asp that resides in the catalytic cleft of the enzyme and participates in a salt bridge.; GO: 0005524 ATP binding, 0019205 nucleobase-containing compound kinase activity, 0006139 nucleobase-containing compound metabolic process; PDB: 1ZD8_A 3TLX_D 1TEV_A 1ZAK_B 3CM0_A 3ADK_A 1ZIP_A 1ZIO_A 1ZIN_A 3NDP_A ....
Probab=94.93 E-value=0.025 Score=53.73 Aligned_cols=91 Identities=21% Similarity=0.168 Sum_probs=44.9
Q ss_pred EEecCCChhHHHHHHHHHHhhccccceeecccccchhcCCCChHHHHHHHHHHHhcCccccCCCCChHHHHHHhcC--Cc
Q 002220 214 IWGMGGIGKTTLAGAVFKLISREFEGKCFMPNVREESENGGGLVYLRDRVVSEIFQEDIKIGTPYLPDYIVERLNR--MK 291 (951)
Q Consensus 214 I~G~gGiGKTtLA~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~l~~~il~~l~~~~~~~~~~~~~~~l~~~l~~--~~ 291 (951)
|.|++|.||||+|+.++.++ .|..+..-..+++...... .+...+...+. .....++.-..+.+.+++.. ..
T Consensus 1 i~G~PgsGK~t~~~~la~~~--~~~~is~~~llr~~~~~~s---~~g~~i~~~l~-~g~~vp~~~v~~ll~~~l~~~~~~ 74 (151)
T PF00406_consen 1 ILGPPGSGKGTQAKRLAKRY--GLVHISVGDLLREEIKSDS---ELGKQIQEYLD-NGELVPDELVIELLKERLEQPPCN 74 (151)
T ss_dssp EEESTTSSHHHHHHHHHHHH--TSEEEEHHHHHHHHHHTTS---HHHHHHHHHHH-TTSS--HHHHHHHHHHHHHSGGTT
T ss_pred CcCCCCCChHHHHHHHHHhc--CcceechHHHHHHHHhhhh---HHHHHHHHHHH-hhccchHHHHHHHHHHHHhhhccc
Confidence 68999999999999999865 3333322222222221111 11122222221 11111111111555555543 24
Q ss_pred EEEEEeCC-CChHHHHHHHh
Q 002220 292 VLTVLDDV-NKVRQLHYLAC 310 (951)
Q Consensus 292 ~LlVlDdv-~~~~~~~~l~~ 310 (951)
.-+|||+. .+..+.+.+..
T Consensus 75 ~g~ildGfPrt~~Qa~~l~~ 94 (151)
T PF00406_consen 75 RGFILDGFPRTLEQAEALEE 94 (151)
T ss_dssp TEEEEESB-SSHHHHHHHHH
T ss_pred ceeeeeeccccHHHHHHHHH
Confidence 56789998 45566655544
No 379
>COG1224 TIP49 DNA helicase TIP49, TBP-interacting protein [Transcription]
Probab=94.93 E-value=0.049 Score=56.78 Aligned_cols=59 Identities=27% Similarity=0.272 Sum_probs=45.5
Q ss_pred CCCCCCcccchhhHHH---HHHhhccCCCCcEEEEEEecCCChhHHHHHHHHHHhhccccce
Q 002220 182 STYSDGFVGLNSRIQK---IKSLLCIGLPDFRTIGIWGMGGIGKTTLAGAVFKLISREFEGK 240 (951)
Q Consensus 182 ~~~~~~~vGr~~~~~~---l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~~~~~~~~~f~~~ 240 (951)
-...+.+||..+..+. +.++...+.-.-+.|.++|++|.|||+||..+++.+...-+.+
T Consensus 35 k~~~dG~VGQ~~AReAaGvIv~mik~gk~aGrgiLi~GppgTGKTAlA~gIa~eLG~dvPF~ 96 (450)
T COG1224 35 KFIGDGLVGQEEAREAAGVIVKMIKQGKMAGRGILIVGPPGTGKTALAMGIARELGEDVPFV 96 (450)
T ss_pred eEcCCcccchHHHHHhhhHHHHHHHhCcccccEEEEECCCCCcHHHHHHHHHHHhCCCCCce
Confidence 3456789998876654 5566655545568999999999999999999999887765543
No 380
>KOG0736 consensus Peroxisome assembly factor 2 containing the AAA+-type ATPase domain [Posttranslational modification, protein turnover, chaperones]
Probab=94.89 E-value=0.51 Score=54.56 Aligned_cols=58 Identities=33% Similarity=0.350 Sum_probs=39.2
Q ss_pred ccCCCC-CCcccchhhHHHHHHhhcc----------CCCCcEEEEEEecCCChhHHHHHHHHHHhhccc
Q 002220 180 TASTYS-DGFVGLNSRIQKIKSLLCI----------GLPDFRTIGIWGMGGIGKTTLAGAVFKLISREF 237 (951)
Q Consensus 180 ~~~~~~-~~~vGr~~~~~~l~~~L~~----------~~~~~~vv~I~G~gGiGKTtLA~~~~~~~~~~f 237 (951)
..|.+. +++=|.++-..+|.+-+.. +-....=|.++|++|.|||-+|++|+.+..=.|
T Consensus 665 KIPnV~WdDVGGLeevK~eIldTIqlPL~hpeLfssglrkRSGILLYGPPGTGKTLlAKAVATEcsL~F 733 (953)
T KOG0736|consen 665 KIPNVSWDDVGGLEEVKTEILDTIQLPLKHPELFSSGLRKRSGILLYGPPGTGKTLLAKAVATECSLNF 733 (953)
T ss_pred CCCccchhcccCHHHHHHHHHHHhcCcccChhhhhccccccceeEEECCCCCchHHHHHHHHhhceeeE
Confidence 334443 4455677777777765542 222345688999999999999999998654443
No 381
>TIGR00235 udk uridine kinase. Model contains a number of longer eukaryotic proteins and starts bringing in phosphoribulokinase hits at scores of 160 and below
Probab=94.88 E-value=0.027 Score=56.82 Aligned_cols=28 Identities=39% Similarity=0.565 Sum_probs=24.3
Q ss_pred CCcEEEEEEecCCChhHHHHHHHHHHhh
Q 002220 207 PDFRTIGIWGMGGIGKTTLAGAVFKLIS 234 (951)
Q Consensus 207 ~~~~vv~I~G~gGiGKTtLA~~~~~~~~ 234 (951)
+...+|+|+|++|.||||||+.++..+.
T Consensus 4 ~~g~vi~I~G~sGsGKSTl~~~l~~~l~ 31 (207)
T TIGR00235 4 PKGIIIGIGGGSGSGKTTVARKIYEQLG 31 (207)
T ss_pred CCeEEEEEECCCCCCHHHHHHHHHHHhc
Confidence 3457999999999999999999998654
No 382
>PRK08356 hypothetical protein; Provisional
Probab=94.85 E-value=0.13 Score=51.22 Aligned_cols=22 Identities=32% Similarity=0.256 Sum_probs=19.7
Q ss_pred cEEEEEEecCCChhHHHHHHHH
Q 002220 209 FRTIGIWGMGGIGKTTLAGAVF 230 (951)
Q Consensus 209 ~~vv~I~G~gGiGKTtLA~~~~ 230 (951)
..+|+|.|++|.||||+|+.+.
T Consensus 5 ~~~i~~~G~~gsGK~t~a~~l~ 26 (195)
T PRK08356 5 KMIVGVVGKIAAGKTTVAKFFE 26 (195)
T ss_pred cEEEEEECCCCCCHHHHHHHHH
Confidence 3679999999999999999994
No 383
>cd03246 ABCC_Protease_Secretion This family represents the ABC component of the protease secretion system PrtD, a 60-kDa integral membrane protein sharing 37% identity with HlyB, the ABC component of the alpha-hemolysin secretion pathway, in the C-terminal domain. They export degradative enzymes by using a type I protein secretion system and lack an N-terminal signal peptide, but contain a C-terminal secretion signal. The Type I secretion apparatus is made up of three components, an ABC transporter, a membrane fusion protein (MFP), and an outer membrane protein (OMP). For the HlyA transporter complex, HlyB (ABC transporter) and HlyD (MFP) reside in the inner membrane of E. coli. The OMP component is TolC, which is thought to interact with the MFP to form a continuous channel across the periplasm from the cytoplasm to the exterior. HlyB belongs to the family of ABC transporters, which are ubiquitous, ATP-dependent transmembrane pumps or channels. The spectrum of transport substra
Probab=94.83 E-value=0.063 Score=52.37 Aligned_cols=119 Identities=22% Similarity=0.209 Sum_probs=58.3
Q ss_pred cEEEEEEecCCChhHHHHHHHHHHhhccccceeecccccchhcCCCChHHHHHHHHHHHhcCccc---------cCCCCC
Q 002220 209 FRTIGIWGMGGIGKTTLAGAVFKLISREFEGKCFMPNVREESENGGGLVYLRDRVVSEIFQEDIK---------IGTPYL 279 (951)
Q Consensus 209 ~~vv~I~G~gGiGKTtLA~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~l~~~il~~l~~~~~~---------~~~~~~ 279 (951)
-.+++|.|..|.|||||++.++..... ..+.+++.... .. ..........+ .-+.+...- .+..+.
T Consensus 28 Ge~~~i~G~nGsGKStLl~~l~G~~~~-~~G~i~~~g~~-~~--~~~~~~~~~~i-~~~~q~~~~~~~tv~~~lLS~G~~ 102 (173)
T cd03246 28 GESLAIIGPSGSGKSTLARLILGLLRP-TSGRVRLDGAD-IS--QWDPNELGDHV-GYLPQDDELFSGSIAENILSGGQR 102 (173)
T ss_pred CCEEEEECCCCCCHHHHHHHHHhccCC-CCCeEEECCEE-cc--cCCHHHHHhhe-EEECCCCccccCcHHHHCcCHHHH
Confidence 358999999999999999999874432 23334432110 00 00011111100 000000000 011111
Q ss_pred h-HHHHHHhcCCcEEEEEeCCC---ChHHHHHHHhccCCC-CCCCEEEEEeCCchhhh
Q 002220 280 P-DYIVERLNRMKVLTVLDDVN---KVRQLHYLACVLDQF-GPGSRIIITTRDKRILD 332 (951)
Q Consensus 280 ~-~~l~~~l~~~~~LlVlDdv~---~~~~~~~l~~~~~~~-~~gs~IlvTtR~~~v~~ 332 (951)
+ -.+.+.+..++=++++|+.. |....+.+...+... ..|..||++|.+.....
T Consensus 103 qrv~la~al~~~p~~lllDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~~sh~~~~~~ 160 (173)
T cd03246 103 QRLGLARALYGNPRILVLDEPNSHLDVEGERALNQAIAALKAAGATRIVIAHRPETLA 160 (173)
T ss_pred HHHHHHHHHhcCCCEEEEECCccccCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHH
Confidence 2 34455566677799999873 222222222222111 23667888888876654
No 384
>KOG0743 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=94.83 E-value=0.25 Score=53.75 Aligned_cols=149 Identities=19% Similarity=0.163 Sum_probs=81.1
Q ss_pred cEEEEEEecCCChhHHHHHHHHHHhhccccceeecccccchhcCCCChHHHHHHHHHHHhcCccccCCCCChHHHHHHh-
Q 002220 209 FRTIGIWGMGGIGKTTLAGAVFKLISREFEGKCFMPNVREESENGGGLVYLRDRVVSEIFQEDIKIGTPYLPDYIVERL- 287 (951)
Q Consensus 209 ~~vv~I~G~gGiGKTtLA~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~l~~~il~~l~~~~~~~~~~~~~~~l~~~l- 287 (951)
-|=-.++|+||.|||++..++++.+ +.-++.-...+... . ..+++.|
T Consensus 235 KRGYLLYGPPGTGKSS~IaAmAn~L----~ydIydLeLt~v~~-n---------------------------~dLr~LL~ 282 (457)
T KOG0743|consen 235 KRGYLLYGPPGTGKSSFIAAMANYL----NYDIYDLELTEVKL-D---------------------------SDLRHLLL 282 (457)
T ss_pred hccceeeCCCCCCHHHHHHHHHhhc----CCceEEeeeccccC-c---------------------------HHHHHHHH
Confidence 4567899999999999999999844 22233222211111 0 1122222
Q ss_pred -cCCcEEEEEeCCCChHH--------------------HHHHHhccC--CCCC-CCEEE-EEeCCchhhhhc-----CCC
Q 002220 288 -NRMKVLTVLDDVNKVRQ--------------------LHYLACVLD--QFGP-GSRII-ITTRDKRILDDF-----GVC 337 (951)
Q Consensus 288 -~~~~~LlVlDdv~~~~~--------------------~~~l~~~~~--~~~~-gs~Il-vTtR~~~v~~~~-----~~~ 337 (951)
...+-+||+.|++-.-+ +.-|+..+. |.++ +-||| .||...+-+.-. ..+
T Consensus 283 ~t~~kSIivIEDIDcs~~l~~~~~~~~~~~~~~~~~VTlSGLLNfiDGlwSscg~ERIivFTTNh~EkLDPALlRpGRmD 362 (457)
T KOG0743|consen 283 ATPNKSILLIEDIDCSFDLRERRKKKKENFEGDLSRVTLSGLLNFLDGLWSSCGDERIIVFTTNHKEKLDPALLRPGRMD 362 (457)
T ss_pred hCCCCcEEEEeecccccccccccccccccccCCcceeehHHhhhhhccccccCCCceEEEEecCChhhcCHhhcCCCcce
Confidence 12355666666642210 111222221 2222 34665 466655433221 233
Q ss_pred ccceEEcCCCChhhhHHHHhhhhccCCCCChhHHHHHHHHHHHcCCCchHHHHHhhhcC
Q 002220 338 DTDIYEVNKLRFHEALVLFSNFAFKENQCPGDLLALLERVLKYANGNPLALRVLGSFFH 396 (951)
Q Consensus 338 ~~~~~~l~~L~~~~a~~Lf~~~~~~~~~~~~~~~~~~~~i~~~~~g~PLal~~~~~~L~ 396 (951)
..+.++-=+.+.-..|+.++..... +. .++.+|.+...+.-+.-..++..|-
T Consensus 363 --mhI~mgyCtf~~fK~La~nYL~~~~-~h----~L~~eie~l~~~~~~tPA~V~e~lm 414 (457)
T KOG0743|consen 363 --MHIYMGYCTFEAFKTLASNYLGIEE-DH----RLFDEIERLIEETEVTPAQVAEELM 414 (457)
T ss_pred --eEEEcCCCCHHHHHHHHHHhcCCCC-Cc----chhHHHHHHhhcCccCHHHHHHHHh
Confidence 5678888899999999998874433 12 4566666666666666565655443
No 385
>cd01130 VirB11-like_ATPase Type IV secretory pathway component VirB11, and related ATPases. The homohexamer, VirB11 is one of eleven Vir proteins, which are required for T-pilus biogenesis and virulence in the transfer of T-DNA from the Ti (tumor-inducing) plasmid of bacterial to plant cells. The pilus is a fibrous cell surface organelle, which mediates adhesion between bacteria during conjugative transfer or between bacteria and host eukaryotic cells during infection. VirB11- related ATPases include the archaeal flagella biosynthesis protein and the pilus assembly proteins CpaF/TadA and TrbB. This alignment contains the C-terminal domain, which is the ATPase.
Probab=94.82 E-value=0.027 Score=55.67 Aligned_cols=92 Identities=20% Similarity=0.117 Sum_probs=52.2
Q ss_pred cEEEEEEecCCChhHHHHHHHHHHhhccccceeecccccchhcCCCChHHHHHHHHHHHhcCccc--cCCCCCh-HHHHH
Q 002220 209 FRTIGIWGMGGIGKTTLAGAVFKLISREFEGKCFMPNVREESENGGGLVYLRDRVVSEIFQEDIK--IGTPYLP-DYIVE 285 (951)
Q Consensus 209 ~~vv~I~G~gGiGKTtLA~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~l~~~il~~l~~~~~~--~~~~~~~-~~l~~ 285 (951)
...++|.|..|.||||+++.+...+...- ..+.+.+..+....... .. ++...... ....... +.++.
T Consensus 25 g~~i~I~G~tGSGKTTll~aL~~~i~~~~-~~i~ied~~E~~~~~~~-------~~-~~~~~~~~~~~~~~~~~~~~l~~ 95 (186)
T cd01130 25 RKNILISGGTGSGKTTLLNALLAFIPPDE-RIITIEDTAELQLPHPN-------WV-RLVTRPGNVEGSGEVTMADLLRS 95 (186)
T ss_pred CCEEEEECCCCCCHHHHHHHHHhhcCCCC-CEEEECCccccCCCCCC-------EE-EEEEecCCCCCCCccCHHHHHHH
Confidence 46899999999999999999988665332 23333322221110000 00 00000000 0111122 66777
Q ss_pred HhcCCcEEEEEeCCCChHHHHHHH
Q 002220 286 RLNRMKVLTVLDDVNKVRQLHYLA 309 (951)
Q Consensus 286 ~l~~~~~LlVlDdv~~~~~~~~l~ 309 (951)
.++..+=.++++.+.+.+.++.+.
T Consensus 96 ~lR~~pd~i~igEir~~ea~~~~~ 119 (186)
T cd01130 96 ALRMRPDRIIVGEVRGGEALDLLQ 119 (186)
T ss_pred HhccCCCEEEEEccCcHHHHHHHH
Confidence 788888899999999887765444
No 386
>PRK00131 aroK shikimate kinase; Reviewed
Probab=94.82 E-value=0.024 Score=55.46 Aligned_cols=26 Identities=27% Similarity=0.325 Sum_probs=23.2
Q ss_pred cEEEEEEecCCChhHHHHHHHHHHhh
Q 002220 209 FRTIGIWGMGGIGKTTLAGAVFKLIS 234 (951)
Q Consensus 209 ~~vv~I~G~gGiGKTtLA~~~~~~~~ 234 (951)
...|.|+|++|.||||+|+.++.++.
T Consensus 4 ~~~i~l~G~~GsGKstla~~La~~l~ 29 (175)
T PRK00131 4 GPNIVLIGFMGAGKSTIGRLLAKRLG 29 (175)
T ss_pred CCeEEEEcCCCCCHHHHHHHHHHHhC
Confidence 45899999999999999999998763
No 387
>PRK00889 adenylylsulfate kinase; Provisional
Probab=94.80 E-value=0.035 Score=54.28 Aligned_cols=28 Identities=32% Similarity=0.361 Sum_probs=24.4
Q ss_pred CcEEEEEEecCCChhHHHHHHHHHHhhc
Q 002220 208 DFRTIGIWGMGGIGKTTLAGAVFKLISR 235 (951)
Q Consensus 208 ~~~vv~I~G~gGiGKTtLA~~~~~~~~~ 235 (951)
...+|+|.|++|.||||+|++++.....
T Consensus 3 ~g~~i~~~G~~GsGKST~a~~la~~l~~ 30 (175)
T PRK00889 3 RGVTVWFTGLSGAGKTTIARALAEKLRE 30 (175)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHH
Confidence 3469999999999999999999987654
No 388
>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A.
Probab=94.80 E-value=0.1 Score=47.92 Aligned_cols=19 Identities=37% Similarity=0.481 Sum_probs=11.2
Q ss_pred echhhhccCCCccEEEEcC
Q 002220 544 LNSRAFANMSNLRLLKFYM 562 (951)
Q Consensus 544 ~~~~~f~~l~~Lr~L~l~~ 562 (951)
+...+|.++++|+.+.+..
T Consensus 3 i~~~~F~~~~~l~~i~~~~ 21 (129)
T PF13306_consen 3 IGNNAFYNCSNLESITFPN 21 (129)
T ss_dssp E-TTTTTT-TT--EEEETS
T ss_pred ECHHHHhCCCCCCEEEECC
Confidence 5667888888888888753
No 389
>TIGR00708 cobA cob(I)alamin adenosyltransferase. Alternate name: corrinoid adenosyltransferase.
Probab=94.77 E-value=0.12 Score=49.45 Aligned_cols=114 Identities=18% Similarity=0.025 Sum_probs=57.6
Q ss_pred EEEEEEecCCChhHHHHHHHHHHhhcccccee---ecccccchhcCCCChHHHHHHHHHHHhcCcc----ccCCCC----
Q 002220 210 RTIGIWGMGGIGKTTLAGAVFKLISREFEGKC---FMPNVREESENGGGLVYLRDRVVSEIFQEDI----KIGTPY---- 278 (951)
Q Consensus 210 ~vv~I~G~gGiGKTtLA~~~~~~~~~~f~~~~---~~~~~~~~~~~~~~~~~l~~~il~~l~~~~~----~~~~~~---- 278 (951)
..|-|++..|.||||.|..++-+...+=-.++ |+-.. . ..+-....+.+.-.+..... ...+..
T Consensus 6 Gli~v~~g~GkGKtt~a~g~a~ra~~~g~~v~ivQFlKg~----~-~~GE~~~l~~~~~~~~~~g~g~~~~~~~~~~~~~ 80 (173)
T TIGR00708 6 GIIIVHTGNGKGKTTAAFGMALRALGHGKKVGVIQFIKGA----W-PNGERAAFEPHGVEFQVMGTGFTWETQNREADTA 80 (173)
T ss_pred cEEEEECCCCCChHHHHHHHHHHHHHCCCeEEEEEEecCC----c-ccChHHHHHhcCcEEEECCCCCeecCCCcHHHHH
Confidence 57788888999999999998876543322222 32211 0 11222222221000000000 000000
Q ss_pred ---Ch-HHHHHHhcCCc-EEEEEeCCCC-----hHHHHHHHhccCCCCCCCEEEEEeCCc
Q 002220 279 ---LP-DYIVERLNRMK-VLTVLDDVNK-----VRQLHYLACVLDQFGPGSRIIITTRDK 328 (951)
Q Consensus 279 ---~~-~~l~~~l~~~~-~LlVlDdv~~-----~~~~~~l~~~~~~~~~gs~IlvTtR~~ 328 (951)
.. +..++.+...+ =|+|||.+-. .-..+.+...+....++..||+|-|+.
T Consensus 81 ~~~~~~~~a~~~l~~~~~DlvVLDEi~~A~~~gli~~~~v~~lL~~rp~~~evVlTGR~~ 140 (173)
T TIGR00708 81 IAKAAWQHAKEMLADPELDLVLLDELTYALKYGYLDVEEVVEALQERPGHQHVIITGRGC 140 (173)
T ss_pred HHHHHHHHHHHHHhcCCCCEEEehhhHHHHHCCCcCHHHHHHHHHhCCCCCEEEEECCCC
Confidence 01 33344444444 4999999832 222334444444456778999999987
No 390
>PF10236 DAP3: Mitochondrial ribosomal death-associated protein 3; InterPro: IPR019368 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This entry represents a family of conserved proteins which were originally described as death-associated-protein-3 (DAP-3). The proteins carry a P-loop DNA-binding motif, and induce apoptosis []. DAP3 has been shown to be a pro-apoptotic factor in the mitochondrial matrix [] and to be crucial for mitochondrial biogenesis and so has also been designated as MRP-S29 (mitochondrial ribosomal protein subunit 29).
Probab=94.76 E-value=0.38 Score=51.61 Aligned_cols=48 Identities=31% Similarity=0.283 Sum_probs=33.5
Q ss_pred eEEcCCCChhhhHHHHhhhhccCCCCC-hhHHHHHHHHHHHcCCCchHH
Q 002220 341 IYEVNKLRFHEALVLFSNFAFKENQCP-GDLLALLERVLKYANGNPLAL 388 (951)
Q Consensus 341 ~~~l~~L~~~~a~~Lf~~~~~~~~~~~-~~~~~~~~~i~~~~~g~PLal 388 (951)
+++|++++.+|+..++..+.-.+-... ...+...+++.-..+|+|--+
T Consensus 258 ~i~v~~~s~~E~~~ll~yy~~~~~l~~~~~~~~~~e~~~~~s~GNp~el 306 (309)
T PF10236_consen 258 PIEVPRLSKEEARSLLEYYADSGWLRSRVDEELVLEKLFLSSNGNPREL 306 (309)
T ss_pred eEEeCCCCHHHHHHHHHHHHHCCccccCCCCHHHHHHHHHhcCCCHHHh
Confidence 789999999999999988774332221 223345566676779998654
No 391
>PRK00279 adk adenylate kinase; Reviewed
Probab=94.74 E-value=0.1 Score=52.92 Aligned_cols=23 Identities=26% Similarity=0.239 Sum_probs=20.5
Q ss_pred EEEEEecCCChhHHHHHHHHHHh
Q 002220 211 TIGIWGMGGIGKTTLAGAVFKLI 233 (951)
Q Consensus 211 vv~I~G~gGiGKTtLA~~~~~~~ 233 (951)
.|.|.|++|.||||+|+.++.++
T Consensus 2 ~I~v~G~pGsGKsT~a~~la~~~ 24 (215)
T PRK00279 2 RLILLGPPGAGKGTQAKFIAEKY 24 (215)
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 47899999999999999998764
No 392
>KOG0652 consensus 26S proteasome regulatory complex, ATPase RPT5 [Posttranslational modification, protein turnover, chaperones]
Probab=94.74 E-value=0.53 Score=46.88 Aligned_cols=52 Identities=23% Similarity=0.370 Sum_probs=36.6
Q ss_pred CCcccchhhHHHHHHhhccC-----------CCCcEEEEEEecCCChhHHHHHHHHHHhhccc
Q 002220 186 DGFVGLNSRIQKIKSLLCIG-----------LPDFRTIGIWGMGGIGKTTLAGAVFKLISREF 237 (951)
Q Consensus 186 ~~~vGr~~~~~~l~~~L~~~-----------~~~~~vv~I~G~gGiGKTtLA~~~~~~~~~~f 237 (951)
.++=|.+..+++|.+.+... -..++-|..+|++|.|||-+|++.+.+....|
T Consensus 171 sDiGGldkQIqELvEAiVLpmth~ekF~~lgi~pPKGvLmYGPPGTGKTlmARAcAaqT~aTF 233 (424)
T KOG0652|consen 171 SDIGGLDKQIQELVEAIVLPMTHKEKFENLGIRPPKGVLMYGPPGTGKTLMARACAAQTNATF 233 (424)
T ss_pred cccccHHHHHHHHHHHhccccccHHHHHhcCCCCCCceEeeCCCCCcHHHHHHHHHHhccchH
Confidence 34556777777777665311 13356788999999999999999887554443
No 393
>PRK06547 hypothetical protein; Provisional
Probab=94.73 E-value=0.031 Score=54.13 Aligned_cols=27 Identities=44% Similarity=0.425 Sum_probs=24.0
Q ss_pred CCcEEEEEEecCCChhHHHHHHHHHHh
Q 002220 207 PDFRTIGIWGMGGIGKTTLAGAVFKLI 233 (951)
Q Consensus 207 ~~~~vv~I~G~gGiGKTtLA~~~~~~~ 233 (951)
....+|+|.|.+|.||||+|+.+++..
T Consensus 13 ~~~~~i~i~G~~GsGKTt~a~~l~~~~ 39 (172)
T PRK06547 13 GGMITVLIDGRSGSGKTTLAGALAART 39 (172)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHh
Confidence 457899999999999999999998863
No 394
>COG0468 RecA RecA/RadA recombinase [DNA replication, recombination, and repair]
Probab=94.67 E-value=0.093 Score=54.51 Aligned_cols=47 Identities=30% Similarity=0.312 Sum_probs=36.5
Q ss_pred HHHhhccCCCCcEEEEEEecCCChhHHHHHHHHHHhhccccceeecc
Q 002220 198 IKSLLCIGLPDFRTIGIWGMGGIGKTTLAGAVFKLISREFEGKCFMP 244 (951)
Q Consensus 198 l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~~~~~~~~~f~~~~~~~ 244 (951)
|..+|..+-+.-+++=|+|+.|.||||+|.+++-.....-..++|++
T Consensus 49 LD~~LGGGl~~g~ItEiyG~~gsGKT~lal~~~~~aq~~g~~a~fID 95 (279)
T COG0468 49 LDEALGGGLPRGRITEIYGPESSGKTTLALQLVANAQKPGGKAAFID 95 (279)
T ss_pred HHHHhcCCcccceEEEEecCCCcchhhHHHHHHHHhhcCCCeEEEEe
Confidence 44455434456788899999999999999998876666666788886
No 395
>KOG0727 consensus 26S proteasome regulatory complex, ATPase RPT3 [Posttranslational modification, protein turnover, chaperones]
Probab=94.67 E-value=0.052 Score=53.48 Aligned_cols=52 Identities=31% Similarity=0.425 Sum_probs=38.5
Q ss_pred CcccchhhHHHHHHhhcc-----------CCCCcEEEEEEecCCChhHHHHHHHHHHhhcccc
Q 002220 187 GFVGLNSRIQKIKSLLCI-----------GLPDFRTIGIWGMGGIGKTTLAGAVFKLISREFE 238 (951)
Q Consensus 187 ~~vGr~~~~~~l~~~L~~-----------~~~~~~vv~I~G~gGiGKTtLA~~~~~~~~~~f~ 238 (951)
++=|.|-...++.+.... +-+..+-|.++|++|.|||.||+++++.....|-
T Consensus 156 diggld~qkqeireavelplt~~~ly~qigidpprgvllygppg~gktml~kava~~t~a~fi 218 (408)
T KOG0727|consen 156 DIGGLDVQKQEIREAVELPLTHADLYKQIGIDPPRGVLLYGPPGTGKTMLAKAVANHTTAAFI 218 (408)
T ss_pred ccccchhhHHHHHHHHhccchHHHHHHHhCCCCCcceEEeCCCCCcHHHHHHHHhhccchhee
Confidence 455777777777766431 2245678899999999999999999986655553
No 396
>PRK06731 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=94.63 E-value=0.92 Score=47.31 Aligned_cols=28 Identities=29% Similarity=0.376 Sum_probs=23.9
Q ss_pred CcEEEEEEecCCChhHHHHHHHHHHhhc
Q 002220 208 DFRTIGIWGMGGIGKTTLAGAVFKLISR 235 (951)
Q Consensus 208 ~~~vv~I~G~gGiGKTtLA~~~~~~~~~ 235 (951)
+..+++++|.+|+||||+++.++..+..
T Consensus 74 ~~~~i~~~G~~g~GKTtl~~~l~~~l~~ 101 (270)
T PRK06731 74 EVQTIALIGPTGVGKTTTLAKMAWQFHG 101 (270)
T ss_pred CCCEEEEECCCCCcHHHHHHHHHHHHHH
Confidence 3479999999999999999999876544
No 397
>TIGR00390 hslU ATP-dependent protease HslVU, ATPase subunit. This model represents the ATPase subunit of HslVU, while the proteasome-related peptidase subunit is HslV. Residues 54-61 of the model contain a P-loop ATP-binding motif. Cys-287 of E. coli (position 308 in the seed alignment), studied in PubMed:98389714, is Ser in other members of the seed alignment.
Probab=94.58 E-value=0.043 Score=59.76 Aligned_cols=52 Identities=23% Similarity=0.269 Sum_probs=36.8
Q ss_pred CCcccchhhHHHHHHhhccC------------CCCcEEEEEEecCCChhHHHHHHHHHHhhccc
Q 002220 186 DGFVGLNSRIQKIKSLLCIG------------LPDFRTIGIWGMGGIGKTTLAGAVFKLISREF 237 (951)
Q Consensus 186 ~~~vGr~~~~~~l~~~L~~~------------~~~~~vv~I~G~gGiGKTtLA~~~~~~~~~~f 237 (951)
.+++|.++.++.+.-.+... ....+-|.++|++|+|||++|+.++..+...|
T Consensus 12 ~~IiGQ~eAkk~lsvAl~n~~~r~~~~~~~~~e~~p~~ILLiGppG~GKT~lAraLA~~l~~~f 75 (441)
T TIGR00390 12 KYIIGQDNAKKSVAIALRNRYRRSQLNEELKDEVTPKNILMIGPTGVGKTEIARRLAKLANAPF 75 (441)
T ss_pred hhccCHHHHHHHHHHHHHhhhhhhccccccccccCCceEEEECCCCCCHHHHHHHHHHHhCCeE
Confidence 45777777776665444311 11246789999999999999999998765444
No 398
>TIGR01360 aden_kin_iso1 adenylate kinase, isozyme 1 subfamily. Members of this family are adenylate kinase, EC 2.7.4.3. This clade is found only in eukaryotes and includes human adenylate kinase isozyme 1 (myokinase). Within the adenylate kinase superfamily, this set appears specifically closely related to a subfamily of eukaryotic UMP-CMP kinases (TIGR01359), rather than to the large clade of bacterial, archaeal, and eukaryotic adenylate kinase family members in TIGR01351.
Probab=94.56 E-value=0.031 Score=55.41 Aligned_cols=26 Identities=27% Similarity=0.243 Sum_probs=23.1
Q ss_pred CcEEEEEEecCCChhHHHHHHHHHHh
Q 002220 208 DFRTIGIWGMGGIGKTTLAGAVFKLI 233 (951)
Q Consensus 208 ~~~vv~I~G~gGiGKTtLA~~~~~~~ 233 (951)
+..+|+|.|++|+||||+|+.++..+
T Consensus 2 ~~~ii~i~G~~GsGKsTl~~~l~~~~ 27 (188)
T TIGR01360 2 KCKIIFIVGGPGSGKGTQCEKIVEKY 27 (188)
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHh
Confidence 45789999999999999999998754
No 399
>cd03232 ABC_PDR_domain2 The pleiotropic drug resistance-like (PDR) family of ATP-binding cassette (ABC) transporters. PDR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=94.56 E-value=0.15 Score=50.70 Aligned_cols=23 Identities=30% Similarity=0.320 Sum_probs=21.1
Q ss_pred cEEEEEEecCCChhHHHHHHHHH
Q 002220 209 FRTIGIWGMGGIGKTTLAGAVFK 231 (951)
Q Consensus 209 ~~vv~I~G~gGiGKTtLA~~~~~ 231 (951)
-.+++|.|..|.|||||++.++.
T Consensus 33 Ge~~~l~G~nGsGKSTLl~~l~G 55 (192)
T cd03232 33 GTLTALMGESGAGKTTLLDVLAG 55 (192)
T ss_pred CcEEEEECCCCCCHHHHHHHHhC
Confidence 46899999999999999999985
No 400
>TIGR03499 FlhF flagellar biosynthetic protein FlhF.
Probab=94.56 E-value=0.086 Score=55.79 Aligned_cols=28 Identities=25% Similarity=0.231 Sum_probs=24.3
Q ss_pred CcEEEEEEecCCChhHHHHHHHHHHhhc
Q 002220 208 DFRTIGIWGMGGIGKTTLAGAVFKLISR 235 (951)
Q Consensus 208 ~~~vv~I~G~gGiGKTtLA~~~~~~~~~ 235 (951)
..++++|+|++|+||||++..++..+..
T Consensus 193 ~~~vi~~vGptGvGKTTt~~kLa~~~~~ 220 (282)
T TIGR03499 193 QGGVIALVGPTGVGKTTTLAKLAARFVL 220 (282)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHH
Confidence 4579999999999999999999986653
No 401
>COG1102 Cmk Cytidylate kinase [Nucleotide transport and metabolism]
Probab=94.55 E-value=0.029 Score=51.76 Aligned_cols=24 Identities=38% Similarity=0.504 Sum_probs=21.7
Q ss_pred EEEEEecCCChhHHHHHHHHHHhh
Q 002220 211 TIGIWGMGGIGKTTLAGAVFKLIS 234 (951)
Q Consensus 211 vv~I~G~gGiGKTtLA~~~~~~~~ 234 (951)
+|.|.|++|.||||+|+.+++.+.
T Consensus 2 ~ItIsG~pGsG~TTva~~lAe~~g 25 (179)
T COG1102 2 VITISGLPGSGKTTVARELAEHLG 25 (179)
T ss_pred EEEeccCCCCChhHHHHHHHHHhC
Confidence 689999999999999999998653
No 402
>PRK14528 adenylate kinase; Provisional
Probab=94.54 E-value=0.11 Score=51.22 Aligned_cols=24 Identities=29% Similarity=0.335 Sum_probs=21.1
Q ss_pred EEEEEEecCCChhHHHHHHHHHHh
Q 002220 210 RTIGIWGMGGIGKTTLAGAVFKLI 233 (951)
Q Consensus 210 ~vv~I~G~gGiGKTtLA~~~~~~~ 233 (951)
+.|.|.|++|.||||+|+.++..+
T Consensus 2 ~~i~i~G~pGsGKtt~a~~la~~~ 25 (186)
T PRK14528 2 KNIIFMGPPGAGKGTQAKILCERL 25 (186)
T ss_pred cEEEEECCCCCCHHHHHHHHHHHh
Confidence 458899999999999999998755
No 403
>PRK06995 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=94.51 E-value=0.35 Score=54.56 Aligned_cols=26 Identities=23% Similarity=0.244 Sum_probs=23.4
Q ss_pred cEEEEEEecCCChhHHHHHHHHHHhh
Q 002220 209 FRTIGIWGMGGIGKTTLAGAVFKLIS 234 (951)
Q Consensus 209 ~~vv~I~G~gGiGKTtLA~~~~~~~~ 234 (951)
.+|++++|+.|+||||++.+++..+.
T Consensus 256 g~Vi~LvGpnGvGKTTTiaKLA~~~~ 281 (484)
T PRK06995 256 GGVFALMGPTGVGKTTTTAKLAARCV 281 (484)
T ss_pred CcEEEEECCCCccHHHHHHHHHHHHH
Confidence 47999999999999999999998653
No 404
>PRK13947 shikimate kinase; Provisional
Probab=94.51 E-value=0.028 Score=54.75 Aligned_cols=25 Identities=36% Similarity=0.401 Sum_probs=22.1
Q ss_pred EEEEEecCCChhHHHHHHHHHHhhc
Q 002220 211 TIGIWGMGGIGKTTLAGAVFKLISR 235 (951)
Q Consensus 211 vv~I~G~gGiGKTtLA~~~~~~~~~ 235 (951)
-|.|+|++|+||||+|+.+++++.-
T Consensus 3 ~I~l~G~~GsGKst~a~~La~~lg~ 27 (171)
T PRK13947 3 NIVLIGFMGTGKTTVGKRVATTLSF 27 (171)
T ss_pred eEEEEcCCCCCHHHHHHHHHHHhCC
Confidence 4889999999999999999987643
No 405
>TIGR01818 ntrC nitrogen regulation protein NR(I). This model represents NtrC, a DNA-binding response regulator that is phosphorylated by NtrB and interacts with sigma-54. NtrC usually controls the expression of glutamine synthase, GlnA, and may be called GlnL, GlnG, etc.
Probab=94.48 E-value=0.21 Score=57.66 Aligned_cols=47 Identities=21% Similarity=0.185 Sum_probs=35.9
Q ss_pred CCcccchhhHHHHHHhhccCCCCcEEEEEEecCCChhHHHHHHHHHH
Q 002220 186 DGFVGLNSRIQKIKSLLCIGLPDFRTIGIWGMGGIGKTTLAGAVFKL 232 (951)
Q Consensus 186 ~~~vGr~~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~~~~~ 232 (951)
..++|....+.++...+..-......+.|.|.+|+||+++|+.+...
T Consensus 134 ~~lig~s~~~~~v~~~i~~~a~~~~~vli~Ge~GtGK~~~A~~ih~~ 180 (463)
T TIGR01818 134 AELIGEAPAMQEVFRAIGRLSRSDITVLINGESGTGKELVARALHRH 180 (463)
T ss_pred cceeecCHHHHHHHHHHHHHhCcCCeEEEECCCCCCHHHHHHHHHHh
Confidence 45888888887777766533333456789999999999999998764
No 406
>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []. LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....
Probab=94.47 E-value=0.015 Score=34.37 Aligned_cols=18 Identities=50% Similarity=0.846 Sum_probs=10.0
Q ss_pred CCEEEccCCCCcccchhh
Q 002220 869 LEVLDLSGSKIEILPTSI 886 (951)
Q Consensus 869 L~~L~L~~n~l~~l~~~l 886 (951)
|++|+|++|+++.+|..+
T Consensus 2 L~~Ldls~n~l~~ip~~~ 19 (22)
T PF00560_consen 2 LEYLDLSGNNLTSIPSSF 19 (22)
T ss_dssp ESEEEETSSEESEEGTTT
T ss_pred ccEEECCCCcCEeCChhh
Confidence 555555555555555443
No 407
>COG1120 FepC ABC-type cobalamin/Fe3+-siderophores transport systems, ATPase components [Inorganic ion transport and metabolism / Coenzyme metabolism]
Probab=94.47 E-value=0.1 Score=53.30 Aligned_cols=54 Identities=15% Similarity=0.232 Sum_probs=34.4
Q ss_pred HHHHHHhcCCcEEEEEeCCC------ChHHHHHHHhccCCCCCCCEEEEEeCCchhhhhcC
Q 002220 281 DYIVERLNRMKVLTVLDDVN------KVRQLHYLACVLDQFGPGSRIIITTRDKRILDDFG 335 (951)
Q Consensus 281 ~~l~~~l~~~~~LlVlDdv~------~~~~~~~l~~~~~~~~~gs~IlvTtR~~~v~~~~~ 335 (951)
..+.+.|.++.=+++||.-- +....-.+...+.. ..|..||+++-+-..|..++
T Consensus 147 v~iArALaQ~~~iLLLDEPTs~LDi~~Q~evl~ll~~l~~-~~~~tvv~vlHDlN~A~rya 206 (258)
T COG1120 147 VLIARALAQETPILLLDEPTSHLDIAHQIEVLELLRDLNR-EKGLTVVMVLHDLNLAARYA 206 (258)
T ss_pred HHHHHHHhcCCCEEEeCCCccccCHHHHHHHHHHHHHHHH-hcCCEEEEEecCHHHHHHhC
Confidence 66778888888899999742 22222222222221 34777999999998877653
No 408
>TIGR03600 phage_DnaB phage replicative helicase, DnaB family, HK022 subfamily. Members of this family are phage (or prophage-region) homologs of the bacterial homohexameric replicative helicase DnaB. Some phage may rely on host DnaB, while others encode their own verions. This model describes the largest phage-specific clade among the close homologs of DnaB, but there are, or course, other DnaB homologs from phage that fall outside the scope of this model.
Probab=94.45 E-value=0.63 Score=52.73 Aligned_cols=72 Identities=26% Similarity=0.287 Sum_probs=44.9
Q ss_pred cccchhhHHHHHHhhccCCCCcEEEEEEecCCChhHHHHHHHHHHhh-ccccceeecccccchhcCCCChHHHHHHHHHH
Q 002220 188 FVGLNSRIQKIKSLLCIGLPDFRTIGIWGMGGIGKTTLAGAVFKLIS-REFEGKCFMPNVREESENGGGLVYLRDRVVSE 266 (951)
Q Consensus 188 ~vGr~~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~~~~~~~-~~f~~~~~~~~~~~~~~~~~~~~~l~~~il~~ 266 (951)
..|...-...|.+++. +-..-.++.|.|.+|+|||++|..++.... .+-..++|++ . ......+..+++..
T Consensus 174 ~~gi~tG~~~LD~~~~-G~~~g~liviag~pg~GKT~~al~ia~~~a~~~g~~v~~fS-l------Em~~~~l~~Rl~~~ 245 (421)
T TIGR03600 174 LTGLSTGLPKLDRLTN-GLVKGDLIVIGARPSMGKTTLALNIAENVALREGKPVLFFS-L------EMSAEQLGERLLAS 245 (421)
T ss_pred CcceeCCChhHHHHhc-CCCCCceEEEEeCCCCCHHHHHHHHHHHHHHhCCCcEEEEE-C------CCCHHHHHHHHHHH
Confidence 3455555556666553 334456889999999999999999996553 2223344543 1 33445666666655
Q ss_pred H
Q 002220 267 I 267 (951)
Q Consensus 267 l 267 (951)
.
T Consensus 246 ~ 246 (421)
T TIGR03600 246 K 246 (421)
T ss_pred H
Confidence 4
No 409
>TIGR02788 VirB11 P-type DNA transfer ATPase VirB11. The VirB11 protein is found in the vir locus of Agrobacterium Ti plasmids where it is involved in the type IV secretion system for DNA transfer. VirB11 is believed to be an ATPase. VirB11 is a homolog of the P-like conjugation system TrbB protein and the Flp pilus sytem protein TadA.
Probab=94.42 E-value=0.076 Score=57.10 Aligned_cols=112 Identities=18% Similarity=0.137 Sum_probs=60.9
Q ss_pred CcEEEEEEecCCChhHHHHHHHHHHhhccccceeecccccchhcCCCChHHHHHHHHHHHhcCccccCCCCChHHHHHHh
Q 002220 208 DFRTIGIWGMGGIGKTTLAGAVFKLISREFEGKCFMPNVREESENGGGLVYLRDRVVSEIFQEDIKIGTPYLPDYIVERL 287 (951)
Q Consensus 208 ~~~vv~I~G~gGiGKTtLA~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~l~~~il~~l~~~~~~~~~~~~~~~l~~~l 287 (951)
....++|+|..|.||||+++.+...+.... .++.+.+..+..........+ .. .............+.+...+
T Consensus 143 ~~~~ili~G~tGsGKTTll~al~~~~~~~~-~iv~ied~~El~~~~~~~~~l----~~--~~~~~~~~~~~~~~~l~~~L 215 (308)
T TIGR02788 143 SRKNIIISGGTGSGKTTFLKSLVDEIPKDE-RIITIEDTREIFLPHPNYVHL----FY--SKGGQGLAKVTPKDLLQSCL 215 (308)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHccCCccc-cEEEEcCccccCCCCCCEEEE----Ee--cCCCCCcCccCHHHHHHHHh
Confidence 346899999999999999999987654333 233443333221100000000 00 00000111111226777788
Q ss_pred cCCcEEEEEeCCCChHHHHHHHhccCCCCCCCE-EEEEeCCchh
Q 002220 288 NRMKVLTVLDDVNKVRQLHYLACVLDQFGPGSR-IIITTRDKRI 330 (951)
Q Consensus 288 ~~~~~LlVlDdv~~~~~~~~l~~~~~~~~~gs~-IlvTtR~~~v 330 (951)
+..+=.+|+|.+...+.++.+... . .|.. ++.|+-....
T Consensus 216 r~~pd~ii~gE~r~~e~~~~l~a~-~---~g~~~~i~T~Ha~~~ 255 (308)
T TIGR02788 216 RMRPDRIILGELRGDEAFDFIRAV-N---TGHPGSITTLHAGSP 255 (308)
T ss_pred cCCCCeEEEeccCCHHHHHHHHHH-h---cCCCeEEEEEeCCCH
Confidence 888889999999987666543332 2 2332 4666655443
No 410
>cd00227 CPT Chloramphenicol (Cm) phosphotransferase (CPT). Cm-inactivating enzyme; modifies the primary (C-3) hydroxyl of the antibiotic. Related structurally to shikimate kinase II.
Probab=94.41 E-value=0.033 Score=54.43 Aligned_cols=25 Identities=28% Similarity=0.405 Sum_probs=22.4
Q ss_pred EEEEEEecCCChhHHHHHHHHHHhh
Q 002220 210 RTIGIWGMGGIGKTTLAGAVFKLIS 234 (951)
Q Consensus 210 ~vv~I~G~gGiGKTtLA~~~~~~~~ 234 (951)
++|.+.|++|.||||+|+++.....
T Consensus 3 ~~i~l~G~~gsGKst~a~~l~~~~~ 27 (175)
T cd00227 3 RIIILNGGSSAGKSSIARALQSVLA 27 (175)
T ss_pred CEEEEECCCCCCHHHHHHHHHHhhC
Confidence 5899999999999999999988653
No 411
>PRK05986 cob(I)alamin adenolsyltransferase/cobinamide ATP-dependent adenolsyltransferase; Validated
Probab=94.40 E-value=0.095 Score=50.90 Aligned_cols=118 Identities=14% Similarity=0.002 Sum_probs=59.5
Q ss_pred CcEEEEEEecCCChhHHHHHHHHHHhhccccceeecccccchhcCCCChHHHHHHHHHHHh----cCc--cccCCCCC--
Q 002220 208 DFRTIGIWGMGGIGKTTLAGAVFKLISREFEGKCFMPNVREESENGGGLVYLRDRVVSEIF----QED--IKIGTPYL-- 279 (951)
Q Consensus 208 ~~~vv~I~G~gGiGKTtLA~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~l~~~il~~l~----~~~--~~~~~~~~-- 279 (951)
....|.|+|..|-||||.|..++-+...+=..+..+.-.... . ..+-....+.+ ..+. +.. ....+...
T Consensus 21 ~~g~v~v~~g~GkGKtt~a~g~a~ra~g~G~~V~ivQFlKg~-~-~~GE~~~l~~l-~~v~~~~~g~~~~~~~~~~~e~~ 97 (191)
T PRK05986 21 EKGLLIVHTGNGKGKSTAAFGMALRAVGHGKKVGVVQFIKGA-W-STGERNLLEFG-GGVEFHVMGTGFTWETQDRERDI 97 (191)
T ss_pred cCCeEEEECCCCCChHHHHHHHHHHHHHCCCeEEEEEEecCC-C-ccCHHHHHhcC-CCcEEEECCCCCcccCCCcHHHH
Confidence 346899999999999999999887654332222222111110 0 11212222211 0000 000 00000000
Q ss_pred -----h-HHHHHHhcCCc-EEEEEeCCCCh-----HHHHHHHhccCCCCCCCEEEEEeCCc
Q 002220 280 -----P-DYIVERLNRMK-VLTVLDDVNKV-----RQLHYLACVLDQFGPGSRIIITTRDK 328 (951)
Q Consensus 280 -----~-~~l~~~l~~~~-~LlVlDdv~~~-----~~~~~l~~~~~~~~~gs~IlvTtR~~ 328 (951)
. +..++.+...+ =++|||.+-.. -..+.+...+....++..||+|-|+.
T Consensus 98 ~~~~~~~~~a~~~l~~~~ydlvVLDEi~~Al~~gli~~eevi~~L~~rp~~~evVlTGR~~ 158 (191)
T PRK05986 98 AAAREGWEEAKRMLADESYDLVVLDELTYALKYGYLDVEEVLEALNARPGMQHVVITGRGA 158 (191)
T ss_pred HHHHHHHHHHHHHHhCCCCCEEEEehhhHHHHCCCccHHHHHHHHHcCCCCCEEEEECCCC
Confidence 1 33344444444 49999998422 22444555555556778999999976
No 412
>PRK03846 adenylylsulfate kinase; Provisional
Probab=94.39 E-value=0.05 Score=54.40 Aligned_cols=37 Identities=22% Similarity=0.235 Sum_probs=28.5
Q ss_pred CCcEEEEEEecCCChhHHHHHHHHHHhhccccceeec
Q 002220 207 PDFRTIGIWGMGGIGKTTLAGAVFKLISREFEGKCFM 243 (951)
Q Consensus 207 ~~~~vv~I~G~gGiGKTtLA~~~~~~~~~~f~~~~~~ 243 (951)
....+|+|+|++|.||||+|+.+...+...-...+++
T Consensus 22 ~~~~~i~i~G~~GsGKSTla~~l~~~l~~~~~~~~~l 58 (198)
T PRK03846 22 HKGVVLWFTGLSGSGKSTVAGALEEALHELGVSTYLL 58 (198)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHHHhCCCCEEEE
Confidence 4567999999999999999999998764433334444
No 413
>PRK14529 adenylate kinase; Provisional
Probab=94.39 E-value=0.2 Score=50.58 Aligned_cols=91 Identities=24% Similarity=0.168 Sum_probs=46.4
Q ss_pred EEEEecCCChhHHHHHHHHHHhhccc-cceeecccccchhcCCCChHHHHHHHHHHHhcCccccCCCCChHHHHHHhcCC
Q 002220 212 IGIWGMGGIGKTTLAGAVFKLISREF-EGKCFMPNVREESENGGGLVYLRDRVVSEIFQEDIKIGTPYLPDYIVERLNRM 290 (951)
Q Consensus 212 v~I~G~gGiGKTtLA~~~~~~~~~~f-~~~~~~~~~~~~~~~~~~~~~l~~~il~~l~~~~~~~~~~~~~~~l~~~l~~~ 290 (951)
|.|.|++|.||||+|+.++..+.-.+ ...-.+ ++.......+....+.++ ......++.-....+.+++.+.
T Consensus 3 I~l~G~PGsGK~T~a~~La~~~~~~~is~gdll---r~~i~~~t~lg~~i~~~i----~~G~lvpdei~~~lv~~~l~~~ 75 (223)
T PRK14529 3 ILIFGPNGSGKGTQGALVKKKYDLAHIESGAIF---REHIGGGTELGKKAKEYI----DRGDLVPDDITIPMILETLKQD 75 (223)
T ss_pred EEEECCCCCCHHHHHHHHHHHHCCCCcccchhh---hhhccCCChHHHHHHHHH----hccCcchHHHHHHHHHHHHhcc
Confidence 77899999999999999998663221 111111 111110111222222222 2222222222226666666432
Q ss_pred -cEEEEEeCC-CChHHHHHHH
Q 002220 291 -KVLTVLDDV-NKVRQLHYLA 309 (951)
Q Consensus 291 -~~LlVlDdv-~~~~~~~~l~ 309 (951)
.-=+|||+. .+..|.+.+.
T Consensus 76 ~~~g~iLDGfPRt~~Qa~~l~ 96 (223)
T PRK14529 76 GKNGWLLDGFPRNKVQAEKLW 96 (223)
T ss_pred CCCcEEEeCCCCCHHHHHHHH
Confidence 345899998 5566655543
No 414
>cd02028 UMPK_like Uridine monophosphate kinase_like (UMPK_like) is a family of proteins highly similar to the uridine monophosphate kinase (UMPK, EC 2.7.1.48), also known as uridine kinase or uridine-cytidine kinase (UCK).
Probab=94.38 E-value=0.038 Score=54.11 Aligned_cols=25 Identities=36% Similarity=0.481 Sum_probs=22.3
Q ss_pred EEEEEecCCChhHHHHHHHHHHhhc
Q 002220 211 TIGIWGMGGIGKTTLAGAVFKLISR 235 (951)
Q Consensus 211 vv~I~G~gGiGKTtLA~~~~~~~~~ 235 (951)
+|+|.|.+|.||||||+.+...+..
T Consensus 1 ii~i~G~sgsGKttla~~l~~~l~~ 25 (179)
T cd02028 1 VVGIAGPSGSGKTTFAKKLSNQLRV 25 (179)
T ss_pred CEEEECCCCCCHHHHHHHHHHHHHH
Confidence 5899999999999999999987654
No 415
>PF03969 AFG1_ATPase: AFG1-like ATPase; InterPro: IPR005654 ATPase family gene 1 (AFG1) ATPase is a 377 amino acid putative protein with an ATPase motif typical of the protein family including SEC18p PAS1, CDC48-VCP and TBP. AFG1 also has substantial homology to these proteins outside the ATPase domain []. This family of proteins contains a P-loop motif.; GO: 0005524 ATP binding
Probab=94.36 E-value=0.11 Score=56.58 Aligned_cols=99 Identities=20% Similarity=0.314 Sum_probs=56.5
Q ss_pred CCcEEEEEEecCCChhHHHHHHHHHHhhcc----ccceeecccccchhcCCCChHHHHHHHHHHHhcCccccCCCCChHH
Q 002220 207 PDFRTIGIWGMGGIGKTTLAGAVFKLISRE----FEGKCFMPNVREESENGGGLVYLRDRVVSEIFQEDIKIGTPYLPDY 282 (951)
Q Consensus 207 ~~~~vv~I~G~gGiGKTtLA~~~~~~~~~~----f~~~~~~~~~~~~~~~~~~~~~l~~~il~~l~~~~~~~~~~~~~~~ 282 (951)
...+=+-|||..|.|||.|+-.+|+.+... ...+-|. ..+.+.+-.. . ........
T Consensus 60 ~~~~GlYl~G~vG~GKT~Lmd~f~~~lp~~~k~R~HFh~Fm-------------~~vh~~l~~~-~------~~~~~l~~ 119 (362)
T PF03969_consen 60 PPPKGLYLWGPVGRGKTMLMDLFYDSLPIKRKRRVHFHEFM-------------LDVHSRLHQL-R------GQDDPLPQ 119 (362)
T ss_pred CCCceEEEECCCCCchhHHHHHHHHhCCccccccccccHHH-------------HHHHHHHHHH-h------CCCccHHH
Confidence 346788999999999999999999854321 1111121 1222222211 1 11111256
Q ss_pred HHHHhcCCcEEEEEeCC--CChHH---HHHHHhccCCCCCCCEEEEEeCCc
Q 002220 283 IVERLNRMKVLTVLDDV--NKVRQ---LHYLACVLDQFGPGSRIIITTRDK 328 (951)
Q Consensus 283 l~~~l~~~~~LlVlDdv--~~~~~---~~~l~~~~~~~~~gs~IlvTtR~~ 328 (951)
+.+.+.++..||.||.+ .|..+ +..+...+- ..|. |||+|-+.
T Consensus 120 va~~l~~~~~lLcfDEF~V~DiaDAmil~rLf~~l~--~~gv-vlVaTSN~ 167 (362)
T PF03969_consen 120 VADELAKESRLLCFDEFQVTDIADAMILKRLFEALF--KRGV-VLVATSNR 167 (362)
T ss_pred HHHHHHhcCCEEEEeeeeccchhHHHHHHHHHHHHH--HCCC-EEEecCCC
Confidence 66777788889999985 34433 454544432 4566 55555544
No 416
>cd01858 NGP_1 NGP-1. Autoantigen NGP-1 (Nucleolar G-protein gene 1) has been shown to localize in the nucleolus and nucleolar organizers in all cell types analyzed, which is indicative of a function in ribosomal assembly. NGP-1 and its homologs show a circular permutation of the GTPase signature motifs so that the C-terminal strands 5, 6, and 7 (strand 6 contains the G4 box with NKXD motif) are relocated to the N terminus.
Probab=94.34 E-value=0.36 Score=46.17 Aligned_cols=42 Identities=19% Similarity=0.317 Sum_probs=27.4
Q ss_pred cchhhHHHHHHhhccCC-CCcEEEEEEecCCChhHHHHHHHHH
Q 002220 190 GLNSRIQKIKSLLCIGL-PDFRTIGIWGMGGIGKTTLAGAVFK 231 (951)
Q Consensus 190 Gr~~~~~~l~~~L~~~~-~~~~vv~I~G~gGiGKTtLA~~~~~ 231 (951)
|.+.-++.+.+.+.... .....|+++|++|+|||||...+..
T Consensus 82 ~~~~L~~~l~~~~~~~~~~~~~~v~~~G~~nvGKStliN~l~~ 124 (157)
T cd01858 82 GKGSLIQLLRQFSKLHSDKKQISVGFIGYPNVGKSSIINTLRS 124 (157)
T ss_pred cHHHHHHHHHHHHhhhccccceEEEEEeCCCCChHHHHHHHhc
Confidence 44444455544432111 2345688999999999999999865
No 417
>TIGR03878 thermo_KaiC_2 KaiC domain protein, AF_0795 family. This KaiC domain-containing protein family occurs sporadically across a broad taxonomic range (Euryarchaeota, Aquificae, Dictyoglomi, Epsilonproteobacteria, and Firmicutes), but exclusively in thermophiles.
Probab=94.33 E-value=0.053 Score=56.63 Aligned_cols=38 Identities=18% Similarity=0.273 Sum_probs=29.6
Q ss_pred CCcEEEEEEecCCChhHHHHHHHHHHhhccccceeecc
Q 002220 207 PDFRTIGIWGMGGIGKTTLAGAVFKLISREFEGKCFMP 244 (951)
Q Consensus 207 ~~~~vv~I~G~gGiGKTtLA~~~~~~~~~~f~~~~~~~ 244 (951)
+.-.++.|.|.+|+|||++|.+++.....+-..++|+.
T Consensus 34 p~gs~~lI~G~pGtGKT~l~~qf~~~~a~~Ge~vlyis 71 (259)
T TIGR03878 34 PAYSVINITGVSDTGKSLMVEQFAVTQASRGNPVLFVT 71 (259)
T ss_pred ECCcEEEEEcCCCCCHHHHHHHHHHHHHhCCCcEEEEE
Confidence 45679999999999999999998765444445667764
No 418
>PRK05439 pantothenate kinase; Provisional
Probab=94.33 E-value=0.06 Score=57.03 Aligned_cols=30 Identities=37% Similarity=0.324 Sum_probs=25.5
Q ss_pred CCCcEEEEEEecCCChhHHHHHHHHHHhhc
Q 002220 206 LPDFRTIGIWGMGGIGKTTLAGAVFKLISR 235 (951)
Q Consensus 206 ~~~~~vv~I~G~gGiGKTtLA~~~~~~~~~ 235 (951)
.....+|+|.|.+|+||||+|+.+...+..
T Consensus 83 ~~~~~iIgIaG~~gsGKSTla~~L~~~l~~ 112 (311)
T PRK05439 83 QKVPFIIGIAGSVAVGKSTTARLLQALLSR 112 (311)
T ss_pred CCCCEEEEEECCCCCCHHHHHHHHHHHHHh
Confidence 355789999999999999999999886643
No 419
>TIGR02236 recomb_radA DNA repair and recombination protein RadA. This family consists exclusively of archaeal RadA protein, a homolog of bacterial RecA (TIGR02012), eukaryotic RAD51 (TIGR02239), and archaeal RadB (TIGR02237). This protein is involved in DNA repair and recombination. The member from Pyrococcus horikoshii contains an intein.
Probab=94.30 E-value=0.11 Score=56.10 Aligned_cols=48 Identities=17% Similarity=0.207 Sum_probs=33.8
Q ss_pred HHHHhhccCCCCcEEEEEEecCCChhHHHHHHHHHHhhcc------ccceeecc
Q 002220 197 KIKSLLCIGLPDFRTIGIWGMGGIGKTTLAGAVFKLISRE------FEGKCFMP 244 (951)
Q Consensus 197 ~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~~~~~~~~~------f~~~~~~~ 244 (951)
.+..+|..+-..-.++-|+|.+|+||||+|.+++...... =..++|++
T Consensus 83 ~lD~~l~GGi~~g~i~ei~G~~g~GKT~l~~~~~~~~~~~~~~g~~~~~~~yi~ 136 (310)
T TIGR02236 83 ELDELLGGGIETQAITEVFGEFGSGKTQICHQLAVNVQLPEEKGGLGGKAVYID 136 (310)
T ss_pred HHHHHhcCCCCCCeEEEEECCCCCCHHHHHHHHHHHhcCCcccCCCcceEEEEE
Confidence 4555564333556889999999999999999998754311 12577875
No 420
>PRK05201 hslU ATP-dependent protease ATP-binding subunit HslU; Provisional
Probab=94.30 E-value=0.059 Score=58.80 Aligned_cols=53 Identities=23% Similarity=0.263 Sum_probs=38.5
Q ss_pred CCCcccchhhHHHHHHhhcc---------C---CCCcEEEEEEecCCChhHHHHHHHHHHhhccc
Q 002220 185 SDGFVGLNSRIQKIKSLLCI---------G---LPDFRTIGIWGMGGIGKTTLAGAVFKLISREF 237 (951)
Q Consensus 185 ~~~~vGr~~~~~~l~~~L~~---------~---~~~~~vv~I~G~gGiGKTtLA~~~~~~~~~~f 237 (951)
...++|.+..++.+..++.. + ....+-|.++|++|+|||++|+.++..+...|
T Consensus 14 d~~IiGQe~AkkalavAl~~~~~r~~l~~~~~~e~~~~~ILliGp~G~GKT~LAr~LAk~l~~~f 78 (443)
T PRK05201 14 DKYIIGQDDAKRAVAIALRNRWRRMQLPEELRDEVTPKNILMIGPTGVGKTEIARRLAKLANAPF 78 (443)
T ss_pred ccccCCHHHHHHHHHHHHHHHHHHhcCCcccccccCCceEEEECCCCCCHHHHHHHHHHHhCChh
Confidence 34578888888777766632 0 01146789999999999999999998765443
No 421
>COG1136 SalX ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]
Probab=94.28 E-value=0.13 Score=51.49 Aligned_cols=60 Identities=18% Similarity=0.240 Sum_probs=38.9
Q ss_pred HHHHHHhcCCcEEEEEeCC----C--ChHHHHHHHhccCCCCCCCEEEEEeCCchhhhhcCCCccceEEcC
Q 002220 281 DYIVERLNRMKVLTVLDDV----N--KVRQLHYLACVLDQFGPGSRIIITTRDKRILDDFGVCDTDIYEVN 345 (951)
Q Consensus 281 ~~l~~~l~~~~~LlVlDdv----~--~~~~~~~l~~~~~~~~~gs~IlvTtR~~~v~~~~~~~~~~~~~l~ 345 (951)
-++.+.+-..+-+|+-|+- + +....-.+...+.. ..|..||+.|-+..++..+. +++.+.
T Consensus 151 VAIARAL~~~P~iilADEPTgnLD~~t~~~V~~ll~~~~~-~~g~tii~VTHd~~lA~~~d----r~i~l~ 216 (226)
T COG1136 151 VAIARALINNPKIILADEPTGNLDSKTAKEVLELLRELNK-ERGKTIIMVTHDPELAKYAD----RVIELK 216 (226)
T ss_pred HHHHHHHhcCCCeEEeeCccccCChHHHHHHHHHHHHHHH-hcCCEEEEEcCCHHHHHhCC----EEEEEe
Confidence 6677888889999999964 2 22223233322221 34778999999999988653 455544
No 422
>PF08423 Rad51: Rad51; InterPro: IPR013632 This domain is found at the C terminus of the DNA repair and recombination protein Rad51. It is critical for DNA binding []. Rad51 is a homologue of the bacterial RecA protein. Rad51 and RecA share a core ATPase domain.; PDB: 2ZUC_A 2Z43_C 2ZUD_B 2DFL_A 2ZUB_A 2BKE_A 2KZ3_A 2CVH_B 2CVF_B 1SZP_D ....
Probab=94.26 E-value=0.062 Score=55.86 Aligned_cols=37 Identities=30% Similarity=0.311 Sum_probs=27.7
Q ss_pred HHHHHhhccCCCCcEEEEEEecCCChhHHHHHHHHHH
Q 002220 196 QKIKSLLCIGLPDFRTIGIWGMGGIGKTTLAGAVFKL 232 (951)
Q Consensus 196 ~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~~~~~ 232 (951)
+.|.++|..+-..-.+.=|+|.+|+|||+||.+++-.
T Consensus 25 ~~lD~~L~GGi~~g~itEi~G~~gsGKTql~l~l~~~ 61 (256)
T PF08423_consen 25 KSLDELLGGGIPTGSITEIVGESGSGKTQLCLQLAVN 61 (256)
T ss_dssp HHHHHHTTSSEETTSEEEEEESTTSSHHHHHHHHHHH
T ss_pred HHHHHhhCCCCCCCcEEEEEEecccccchHHHHHHHH
Confidence 3566666433344568889999999999999988754
No 423
>TIGR02655 circ_KaiC circadian clock protein KaiC. Members of this family are the circadian clock protein KaiC, part of the kaiABC operon that controls circadian rhythm. It may be universal in Cyanobacteria. Each member has two copies of the KaiC domain (Pfam model pfam06745), which is also found in other proteins. KaiC performs autophosphorylation and acts as its own transcriptional repressor.
Probab=94.24 E-value=0.065 Score=61.59 Aligned_cols=50 Identities=18% Similarity=0.171 Sum_probs=39.3
Q ss_pred HHHHHHhhccCCCCcEEEEEEecCCChhHHHHHHHHHHhhccccceeecc
Q 002220 195 IQKIKSLLCIGLPDFRTIGIWGMGGIGKTTLAGAVFKLISREFEGKCFMP 244 (951)
Q Consensus 195 ~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~~~~~~~~~f~~~~~~~ 244 (951)
+.++.++|..+-..-.++.|.|.+|+||||||.+++.....+-+.++|+.
T Consensus 249 i~~lD~~lgGG~~~gs~~li~G~~G~GKt~l~~~f~~~~~~~ge~~~y~s 298 (484)
T TIGR02655 249 VVRLDEMCGGGFFKDSIILATGATGTGKTLLVSKFLENACANKERAILFA 298 (484)
T ss_pred hHhHHHHhcCCccCCcEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEE
Confidence 45677777655566789999999999999999999987655556667764
No 424
>cd03240 ABC_Rad50 The catalytic domains of Rad50 are similar to the ATP-binding cassette of ABC transporters, but are not associated with membrane-spanning domains. The conserved ATP-binding motifs common to Rad50 and the ABC transporter family include the Walker A and Walker B motifs, the Q loop, a histidine residue in the switch region, a D-loop, and a conserved LSGG sequence. This conserved sequence, LSGG, is the most specific and characteristic motif of this family and is thus known as the ABC signature sequence.
Probab=94.22 E-value=0.2 Score=50.28 Aligned_cols=20 Identities=40% Similarity=0.398 Sum_probs=19.1
Q ss_pred EEEEEecCCChhHHHHHHHH
Q 002220 211 TIGIWGMGGIGKTTLAGAVF 230 (951)
Q Consensus 211 vv~I~G~gGiGKTtLA~~~~ 230 (951)
+++|+|..|.|||||..+++
T Consensus 24 ~~~i~G~NGsGKTTLl~ai~ 43 (204)
T cd03240 24 LTLIVGQNGAGKTTIIEALK 43 (204)
T ss_pred eEEEECCCCCCHHHHHHHHH
Confidence 99999999999999999985
No 425
>COG0529 CysC Adenylylsulfate kinase and related kinases [Inorganic ion transport and metabolism]
Probab=94.21 E-value=0.065 Score=50.33 Aligned_cols=37 Identities=22% Similarity=0.176 Sum_probs=29.6
Q ss_pred CCcEEEEEEecCCChhHHHHHHHHHHhhccccceeec
Q 002220 207 PDFRTIGIWGMGGIGKTTLAGAVFKLISREFEGKCFM 243 (951)
Q Consensus 207 ~~~~vv~I~G~gGiGKTtLA~~~~~~~~~~f~~~~~~ 243 (951)
....||-+.|++|.||||+|.+++.++....-.+...
T Consensus 21 ~~~~viW~TGLSGsGKSTiA~ale~~L~~~G~~~y~L 57 (197)
T COG0529 21 QKGAVIWFTGLSGSGKSTIANALEEKLFAKGYHVYLL 57 (197)
T ss_pred CCCeEEEeecCCCCCHHHHHHHHHHHHHHcCCeEEEe
Confidence 3457999999999999999999999876665544443
No 426
>COG1703 ArgK Putative periplasmic protein kinase ArgK and related GTPases of G3E family [Amino acid transport and metabolism]
Probab=94.20 E-value=0.065 Score=54.88 Aligned_cols=43 Identities=26% Similarity=0.286 Sum_probs=33.2
Q ss_pred HHHHHhhccCCCCcEEEEEEecCCChhHHHHHHHHHHhhcccc
Q 002220 196 QKIKSLLCIGLPDFRTIGIWGMGGIGKTTLAGAVFKLISREFE 238 (951)
Q Consensus 196 ~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~~~~~~~~~f~ 238 (951)
.++...+.....+..+|+|.|.||+|||||.-++-..+..+-.
T Consensus 38 ~~ll~~l~p~tG~a~viGITG~PGaGKSTli~~L~~~l~~~G~ 80 (323)
T COG1703 38 RELLRALYPRTGNAHVIGITGVPGAGKSTLIEALGRELRERGH 80 (323)
T ss_pred HHHHHHHhhcCCCCcEEEecCCCCCchHHHHHHHHHHHHHCCc
Confidence 3455555555677889999999999999999999887655433
No 427
>cd03281 ABC_MSH5_euk MutS5 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=94.19 E-value=0.066 Score=54.06 Aligned_cols=23 Identities=22% Similarity=0.091 Sum_probs=21.0
Q ss_pred cEEEEEEecCCChhHHHHHHHHH
Q 002220 209 FRTIGIWGMGGIGKTTLAGAVFK 231 (951)
Q Consensus 209 ~~vv~I~G~gGiGKTtLA~~~~~ 231 (951)
.+++.|+|+.|.||||+.+.+..
T Consensus 29 ~~~~~itGpNg~GKStlLk~i~~ 51 (213)
T cd03281 29 PSIMVITGPNSSGKSVYLKQVAL 51 (213)
T ss_pred ceEEEEECCCCCChHHHHHHHHH
Confidence 48899999999999999999874
No 428
>COG0467 RAD55 RecA-superfamily ATPases implicated in signal transduction [Signal transduction mechanisms]
Probab=94.18 E-value=0.065 Score=56.26 Aligned_cols=45 Identities=31% Similarity=0.262 Sum_probs=37.2
Q ss_pred HhhccCCCCcEEEEEEecCCChhHHHHHHHHHHhhccccceeecc
Q 002220 200 SLLCIGLPDFRTIGIWGMGGIGKTTLAGAVFKLISREFEGKCFMP 244 (951)
Q Consensus 200 ~~L~~~~~~~~vv~I~G~gGiGKTtLA~~~~~~~~~~f~~~~~~~ 244 (951)
+.+..+-+.-+++.|+|.+|+|||++|.++..+.......++|+.
T Consensus 14 ~~l~GG~p~g~~~lI~G~pGsGKT~f~~qfl~~~~~~ge~vlyvs 58 (260)
T COG0467 14 EILGGGLPRGSVVLITGPPGTGKTIFALQFLYEGAREGEPVLYVS 58 (260)
T ss_pred HHhcCCCcCCcEEEEEcCCCCcHHHHHHHHHHHHHhcCCcEEEEE
Confidence 344334466789999999999999999999998877788888885
No 429
>cd02024 NRK1 Nicotinamide riboside kinase (NRK) is an enzyme involved in the metabolism of nicotinamide adenine dinucleotide (NAD+). This enzyme catalyzes the phosphorylation of nicotinamide riboside (NR) to form nicotinamide mononucleotide (NMN). It defines the NR salvage pathway of NAD+ biosynthesis in addition to the pathways through nicotinic acid mononucleotide (NaMN). This enzyme can also phosphorylate the anticancer drug tiazofurin, which is an analog of nicotinamide riboside.
Probab=94.15 E-value=0.032 Score=54.54 Aligned_cols=23 Identities=39% Similarity=0.608 Sum_probs=21.1
Q ss_pred EEEEEecCCChhHHHHHHHHHHh
Q 002220 211 TIGIWGMGGIGKTTLAGAVFKLI 233 (951)
Q Consensus 211 vv~I~G~gGiGKTtLA~~~~~~~ 233 (951)
+|+|.|.+|.||||+|+.++..+
T Consensus 1 ii~i~G~sgsGKTtla~~l~~~~ 23 (187)
T cd02024 1 IVGISGVTNSGKTTLAKLLQRIL 23 (187)
T ss_pred CEEEECCCCCCHHHHHHHHHHHc
Confidence 58999999999999999999865
No 430
>COG3854 SpoIIIAA ncharacterized protein conserved in bacteria [Function unknown]
Probab=94.12 E-value=0.14 Score=50.08 Aligned_cols=111 Identities=17% Similarity=0.189 Sum_probs=55.9
Q ss_pred EEEEEEecCCChhHHHHHHHHHHhhcc---cc-ce-eecccccchhcCCCChHHHHHHHHHHHhcCccccCCCCChHHHH
Q 002220 210 RTIGIWGMGGIGKTTLAGAVFKLISRE---FE-GK-CFMPNVREESENGGGLVYLRDRVVSEIFQEDIKIGTPYLPDYIV 284 (951)
Q Consensus 210 ~vv~I~G~gGiGKTtLA~~~~~~~~~~---f~-~~-~~~~~~~~~~~~~~~~~~l~~~il~~l~~~~~~~~~~~~~~~l~ 284 (951)
.-..|.|++|+|||||.+.+++-++.. |. .. +-++.-.+......+..+.....--++.... .....++.
T Consensus 138 lntLiigpP~~GKTTlLRdiaR~~s~g~~~~l~kkv~IiDersEIag~~~gvpq~~~g~R~dVld~c-----pk~~gmmm 212 (308)
T COG3854 138 LNTLIIGPPQVGKTTLLRDIARLLSDGINQFLPKKVGIIDERSEIAGCLNGVPQHGRGRRMDVLDPC-----PKAEGMMM 212 (308)
T ss_pred eeeEEecCCCCChHHHHHHHHHHhhccccccCCceEEEEeccchhhccccCCchhhhhhhhhhcccc-----hHHHHHHH
Confidence 346789999999999999999865443 32 22 2222111111101111111111111111100 00011111
Q ss_pred HHhcCCcEEEEEeCCCChHHHHHHHhccCCCCCCCEEEEEeCCc
Q 002220 285 ERLNRMKVLTVLDDVNKVRQLHYLACVLDQFGPGSRIIITTRDK 328 (951)
Q Consensus 285 ~~l~~~~~LlVlDdv~~~~~~~~l~~~~~~~~~gs~IlvTtR~~ 328 (951)
..-...+=.+|+|.+-..++..++...+ ..|.+++.|.--.
T Consensus 213 aIrsm~PEViIvDEIGt~~d~~A~~ta~---~~GVkli~TaHG~ 253 (308)
T COG3854 213 AIRSMSPEVIIVDEIGTEEDALAILTAL---HAGVKLITTAHGN 253 (308)
T ss_pred HHHhcCCcEEEEeccccHHHHHHHHHHH---hcCcEEEEeeccc
Confidence 1112356799999998877766665554 4688877776433
No 431
>PRK10751 molybdopterin-guanine dinucleotide biosynthesis protein B; Provisional
Probab=94.11 E-value=0.058 Score=51.76 Aligned_cols=28 Identities=25% Similarity=0.297 Sum_probs=24.8
Q ss_pred CcEEEEEEecCCChhHHHHHHHHHHhhc
Q 002220 208 DFRTIGIWGMGGIGKTTLAGAVFKLISR 235 (951)
Q Consensus 208 ~~~vv~I~G~gGiGKTtLA~~~~~~~~~ 235 (951)
...+++|+|..|.|||||++.+...+..
T Consensus 5 ~~~ii~ivG~sgsGKTTLi~~li~~l~~ 32 (173)
T PRK10751 5 MIPLLAIAAWSGTGKTTLLKKLIPALCA 32 (173)
T ss_pred CceEEEEECCCCChHHHHHHHHHHHHhh
Confidence 4679999999999999999999987654
No 432
>PF03266 NTPase_1: NTPase; InterPro: IPR004948 This entry represents a family of nucleoside-triphosphatases which have activity towards ATP, GTP, CTP, TTP and UTP and may hydrolyse nucleoside diphosphates with lower efficiency []. It includes proteins from bacteria to human, and the function was determined first in a hyperthermophilic bacterium to be an NTPase []. The structure of one member-sequence represents a variation of the RecA fold, and implies that the function might be that of a DNA/RNA modifying enzyme []. The sequence carries both a Walker A and Walker B motif which together are characteristic of ATPases or GTPases. The protein exhibits an increased expression profile in human liver cholangiocarcinoma when compared to normal tissue [].; GO: 0005524 ATP binding, 0016740 transferase activity, 0019204 nucleotide phosphatase activity; PDB: 1YE8_A 2I3B_A.
Probab=94.10 E-value=0.041 Score=52.98 Aligned_cols=24 Identities=42% Similarity=0.502 Sum_probs=20.5
Q ss_pred EEEEecCCChhHHHHHHHHHHhhc
Q 002220 212 IGIWGMGGIGKTTLAGAVFKLISR 235 (951)
Q Consensus 212 v~I~G~gGiGKTtLA~~~~~~~~~ 235 (951)
|.|+|.+|+|||||++.+++.++.
T Consensus 2 i~iTG~pG~GKTTll~k~i~~l~~ 25 (168)
T PF03266_consen 2 IFITGPPGVGKTTLLKKVIEELKK 25 (168)
T ss_dssp EEEES-TTSSHHHHHHHHHHHHHH
T ss_pred EEEECcCCCCHHHHHHHHHHHhhc
Confidence 679999999999999999987753
No 433
>PTZ00494 tuzin-like protein; Provisional
Probab=94.08 E-value=0.33 Score=52.61 Aligned_cols=212 Identities=14% Similarity=0.111 Sum_probs=113.0
Q ss_pred HHHHHHHHHHhhcc-------------CCCCccccchhHH--HHHHHHHHHHHhhccc-----cccCCCCCCcccchhhH
Q 002220 136 KAQNWKAALTQASN-------------LSGWASKEIRSEA--QLVDVIVKDILKKLEN-----VTASTYSDGFVGLNSRI 195 (951)
Q Consensus 136 ~~~~w~~al~~~~~-------------~~~~~~~~~~~~~--~~i~~i~~~i~~~~~~-----~~~~~~~~~~vGr~~~~ 195 (951)
|-+.||-++++-+. .-||.++++..+. ..+.--++...+..++ ...+.....+|.|+.+-
T Consensus 301 KERd~RY~l~KYsG~vSa~~a~Lgv~svFgwN~knYr~qQRs~Ql~~Av~TLsk~~~~~~~~~~~a~a~~~~~V~R~~eE 380 (664)
T PTZ00494 301 KDTNFRYALAKYKGTMSCIAGVLVVAYVFTANLRAYRRQQRGHQLRTAIETLSKAARPRKEEGMLAAAAEAFEVRREDEE 380 (664)
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHhhcccCCCcccccccccccccccchhhHH
Confidence 34567776655433 2345555543322 2233334444444311 12344567899999999
Q ss_pred HHHHHhhccC-CCCcEEEEEEecCCChhHHHHHHHHHHhhccccceeecccccchhcCCCChHHHHHHHHHHHhcCcccc
Q 002220 196 QKIKSLLCIG-LPDFRTIGIWGMGGIGKTTLAGAVFKLISREFEGKCFMPNVREESENGGGLVYLRDRVVSEIFQEDIKI 274 (951)
Q Consensus 196 ~~l~~~L~~~-~~~~~vv~I~G~gGiGKTtLA~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~l~~~il~~l~~~~~~~ 274 (951)
.-+...|..- ...++++++.|.-|.||++|.+.... +.--..+|++ ++ +....++.+.+.++.+..+.
T Consensus 381 ~~vRqvL~qld~aHPRIvV~TG~~GcGKSslcRsAvr---kE~~paV~VD-VR-------g~EDtLrsVVKALgV~nve~ 449 (664)
T PTZ00494 381 ALVRSVLTQMAPSHPRIVALAGGSGGGRCVPCRRAVR---VEGVALVHVD-VG-------GTEDTLRSVVRALGVSNVEV 449 (664)
T ss_pred HHHHHHHhhccCCCCcEEEEecCCCCCchHHHHHHHH---HcCCCeEEEE-ec-------CCcchHHHHHHHhCCCChhh
Confidence 8888888643 36789999999999999999998765 2333455663 33 22334556666665543332
Q ss_pred CCCCChHHHHH-------HhcCCcEEEEEeCCCChHHHHHH---HhccCCCCCCCEEEEEeCCchhhh-hcCCCccceEE
Q 002220 275 GTPYLPDYIVE-------RLNRMKVLTVLDDVNKVRQLHYL---ACVLDQFGPGSRIIITTRDKRILD-DFGVCDTDIYE 343 (951)
Q Consensus 275 ~~~~~~~~l~~-------~l~~~~~LlVlDdv~~~~~~~~l---~~~~~~~~~gs~IlvTtR~~~v~~-~~~~~~~~~~~ 343 (951)
-. +..+.+.+ ...++.-+||+- +.+...+... ...+.....-|+|++----+.+-- ......-..|-
T Consensus 450 CG-DlLdFI~ea~~~A~~~~~g~~P~lVlk-LREGssL~RVYnE~vaLacDrRlCHvv~EVplESLT~~n~~LPRLDFy~ 527 (664)
T PTZ00494 450 CG-DLLGFVEEAMRGATVKASDGVPFLVMR-LREGSDLGRVYGEVVSLVSDCQACHIVLAVPMKALTPLNVSSRRLDFYC 527 (664)
T ss_pred hc-cHHHHHHHHHHHHHHhcCCCCCEEEEE-eccCCcHHHHHHHHHHHHccchhheeeeechHhhhchhhccCccceeEe
Confidence 11 11222222 234455566652 1111111111 011222234566665433222210 11111225799
Q ss_pred cCCCChhhhHHHHhhhh
Q 002220 344 VNKLRFHEALVLFSNFA 360 (951)
Q Consensus 344 l~~L~~~~a~~Lf~~~~ 360 (951)
++.++.++|.++-....
T Consensus 528 VPnFSr~QAf~YtqH~l 544 (664)
T PTZ00494 528 IPPFSRRQAFAYAEHTL 544 (664)
T ss_pred cCCcCHHHHHHHHhccc
Confidence 99999999998876543
No 434
>COG1428 Deoxynucleoside kinases [Nucleotide transport and metabolism]
Probab=94.07 E-value=0.046 Score=53.19 Aligned_cols=26 Identities=42% Similarity=0.414 Sum_probs=23.6
Q ss_pred cEEEEEEecCCChhHHHHHHHHHHhh
Q 002220 209 FRTIGIWGMGGIGKTTLAGAVFKLIS 234 (951)
Q Consensus 209 ~~vv~I~G~gGiGKTtLA~~~~~~~~ 234 (951)
..+|+|-||=|+||||||+.+++++.
T Consensus 4 ~~~IvI~G~IG~GKSTLa~~La~~l~ 29 (216)
T COG1428 4 AMVIVIEGMIGAGKSTLAQALAEHLG 29 (216)
T ss_pred ccEEEEecccccCHHHHHHHHHHHhC
Confidence 46899999999999999999998765
No 435
>PF03205 MobB: Molybdopterin guanine dinucleotide synthesis protein B; PDB: 2F1R_B 1P9N_A 1NP6_B 2NPI_A 1XJC_A.
Probab=94.07 E-value=0.06 Score=50.08 Aligned_cols=34 Identities=21% Similarity=0.286 Sum_probs=25.6
Q ss_pred EEEEEEecCCChhHHHHHHHHHHhh-ccccceeec
Q 002220 210 RTIGIWGMGGIGKTTLAGAVFKLIS-REFEGKCFM 243 (951)
Q Consensus 210 ~vv~I~G~gGiGKTtLA~~~~~~~~-~~f~~~~~~ 243 (951)
++|.|+|..|+|||||++.+.+.+. ..+...++.
T Consensus 1 pvv~VvG~~~sGKTTl~~~Li~~l~~~g~~v~~ik 35 (140)
T PF03205_consen 1 PVVQVVGPKNSGKTTLIRKLINELKRRGYRVAVIK 35 (140)
T ss_dssp -EEEEEESTTSSHHHHHHHHHHHHHHTT--EEEEE
T ss_pred CEEEEECCCCCCHHHHHHHHHHHHhHcCCceEEEE
Confidence 4799999999999999999999776 445544343
No 436
>PRK07132 DNA polymerase III subunit delta'; Validated
Probab=94.06 E-value=7.8 Score=41.21 Aligned_cols=167 Identities=6% Similarity=0.025 Sum_probs=90.4
Q ss_pred HHHHHhhccCCCCcEEEEEEecCCChhHHHHHHHHHHhhc--------c-cc-ceeecccccchhcCCCChHHHHHHHHH
Q 002220 196 QKIKSLLCIGLPDFRTIGIWGMGGIGKTTLAGAVFKLISR--------E-FE-GKCFMPNVREESENGGGLVYLRDRVVS 265 (951)
Q Consensus 196 ~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~~~~~~~~--------~-f~-~~~~~~~~~~~~~~~~~~~~l~~~il~ 265 (951)
+.+...+.. ..-.++..++|..|+||+++|..+++.+-. . .+ ...++. .. .....+..+. .+..
T Consensus 6 ~~l~~~i~~-~~l~haYLf~G~eg~gk~~~a~~~a~~l~c~~~~~~~~~~~p~n~~~~d-~~---g~~i~vd~Ir-~l~~ 79 (299)
T PRK07132 6 KFLDNSATQ-NKISHSFLLKSNYNEDIDEKILYFLNKFNNLQITNLNEQELPANIILFD-IF---DKDLSKSEFL-SAIN 79 (299)
T ss_pred HHHHHHHHh-CCCCeEEEEeCCCCCCHHHHHHHHHHHHcCcCCCCCCCCCCCcceEEec-cC---CCcCCHHHHH-HHHH
Confidence 344444432 223567889999999999999999987611 1 11 111221 00 0011222221 1222
Q ss_pred HHhcCccccCCCCChHHHHHHhcCCcEEEEEeCCCChH--HHHHHHhccCCCCCCCEEEEEeCC-chhhhhcCCCccceE
Q 002220 266 EIFQEDIKIGTPYLPDYIVERLNRMKVLTVLDDVNKVR--QLHYLACVLDQFGPGSRIIITTRD-KRILDDFGVCDTDIY 342 (951)
Q Consensus 266 ~l~~~~~~~~~~~~~~~l~~~l~~~~~LlVlDdv~~~~--~~~~l~~~~~~~~~gs~IlvTtR~-~~v~~~~~~~~~~~~ 342 (951)
.+.-... -.+++=++|+|+++... ....++..+...++++.+|++|.+ ..+..... ..+.++
T Consensus 80 ~~~~~~~--------------~~~~~KvvII~~~e~m~~~a~NaLLK~LEEPp~~t~~il~~~~~~kll~TI~-SRc~~~ 144 (299)
T PRK07132 80 KLYFSSF--------------VQSQKKILIIKNIEKTSNSLLNALLKTIEEPPKDTYFLLTTKNINKVLPTIV-SRCQVF 144 (299)
T ss_pred HhccCCc--------------ccCCceEEEEecccccCHHHHHHHHHHhhCCCCCeEEEEEeCChHhChHHHH-hCeEEE
Confidence 2111000 01366788889986553 356666666665677777765544 44443321 112789
Q ss_pred EcCCCChhhhHHHHhhhhccCCCCChhHHHHHHHHHHHcCCCchHHHHH
Q 002220 343 EVNKLRFHEALVLFSNFAFKENQCPGDLLALLERVLKYANGNPLALRVL 391 (951)
Q Consensus 343 ~l~~L~~~~a~~Lf~~~~~~~~~~~~~~~~~~~~i~~~~~g~PLal~~~ 391 (951)
++.++++++..+.+.... .++ +.++.++...+|.--|+..+
T Consensus 145 ~f~~l~~~~l~~~l~~~~-----~~~---~~a~~~a~~~~~~~~a~~~~ 185 (299)
T PRK07132 145 NVKEPDQQKILAKLLSKN-----KEK---EYNWFYAYIFSNFEQAEKYI 185 (299)
T ss_pred ECCCCCHHHHHHHHHHcC-----CCh---hHHHHHHHHcCCHHHHHHHH
Confidence 999999999998876541 111 33555566666533455543
No 437
>cd01123 Rad51_DMC1_radA Rad51_DMC1_radA,B. This group of recombinases includes the eukaryotic proteins RAD51, RAD55/57 and the meiosis-specific protein DMC1, and the archaeal proteins radA and radB. They are closely related to the bacterial RecA group. Rad51 proteins catalyze a similiar recombination reaction as RecA, using ATP-dependent DNA binding activity and a DNA-dependent ATPase. However, this reaction is less efficient and requires accessory proteins such as RAD55/57 .
Probab=94.04 E-value=0.11 Score=53.75 Aligned_cols=48 Identities=21% Similarity=0.216 Sum_probs=33.6
Q ss_pred HHHHhhccCCCCcEEEEEEecCCChhHHHHHHHHHHhhcc------ccceeecc
Q 002220 197 KIKSLLCIGLPDFRTIGIWGMGGIGKTTLAGAVFKLISRE------FEGKCFMP 244 (951)
Q Consensus 197 ~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~~~~~~~~~------f~~~~~~~ 244 (951)
.|.++|..+-..-.++.|+|.+|+|||+||.+++...... -..++|+.
T Consensus 7 ~lD~~l~GGi~~g~i~~i~G~~GsGKT~l~~~l~~~~~~~~~~~g~~~~viyi~ 60 (235)
T cd01123 7 ALDELLGGGIETGSITEIFGEFGSGKTQLCHQLAVTVQLPIELGGLEGKAVYID 60 (235)
T ss_pred hhHhhccCCCCCCeEEEEECCCCCCHHHHHHHHHHHeeCccccCCCCccEEEEe
Confidence 3445554334556899999999999999999997543221 25677775
No 438
>PF06309 Torsin: Torsin; InterPro: IPR010448 This family consists of several eukaryotic torsin proteins. Torsion dystonia is an autosomal dominant movement disorder characterised by involuntary, repetitive muscle contractions and twisted postures. The most severe early-onset form of dystonia has been linked to mutations in the human DYT1 (TOR1A) gene encoding a protein termed torsinA. While causative genetic alterations have been identified, the function of torsin proteins and the molecular mechanism underlying dystonia remain unknown. Phylogenetic analysis of the torsin protein family indicates these proteins share distant sequence similarity with the large and diverse family of AAA ATPase, central region containing proteins () proteins. It has been suggested that torsins play a role in effectively managing protein folding and that possible breakdown in a neuroprotective mechanism that is, in part, mediated by torsins may be responsible for the neuronal dysfunction associated with dystonia [].; GO: 0005524 ATP binding, 0051085 chaperone mediated protein folding requiring cofactor
Probab=93.99 E-value=0.11 Score=46.53 Aligned_cols=46 Identities=17% Similarity=0.229 Sum_probs=32.0
Q ss_pred CcccchhhH----HHHHHhhcc-CCCCcEEEEEEecCCChhHHHHHHHHHH
Q 002220 187 GFVGLNSRI----QKIKSLLCI-GLPDFRTIGIWGMGGIGKTTLAGAVFKL 232 (951)
Q Consensus 187 ~~vGr~~~~----~~l~~~L~~-~~~~~~vv~I~G~gGiGKTtLA~~~~~~ 232 (951)
+++|-.-.. +.|...+.. .+..+-|++.+|.+|+|||.+|+.+++.
T Consensus 26 ~l~GQhla~~~v~~ai~~~l~~~~p~KpLVlSfHG~tGtGKn~v~~liA~~ 76 (127)
T PF06309_consen 26 NLFGQHLAVEVVVNAIKGHLANPNPRKPLVLSFHGWTGTGKNFVSRLIAEH 76 (127)
T ss_pred HccCcHHHHHHHHHHHHHHHcCCCCCCCEEEEeecCCCCcHHHHHHHHHHH
Confidence 345544333 344444432 3456789999999999999999999874
No 439
>PRK14526 adenylate kinase; Provisional
Probab=93.99 E-value=0.12 Score=52.02 Aligned_cols=22 Identities=27% Similarity=0.327 Sum_probs=19.6
Q ss_pred EEEEecCCChhHHHHHHHHHHh
Q 002220 212 IGIWGMGGIGKTTLAGAVFKLI 233 (951)
Q Consensus 212 v~I~G~gGiGKTtLA~~~~~~~ 233 (951)
++|.|++|.||||+|+.++..+
T Consensus 3 i~l~G~pGsGKsT~a~~La~~~ 24 (211)
T PRK14526 3 LVFLGPPGSGKGTIAKILSNEL 24 (211)
T ss_pred EEEECCCCCCHHHHHHHHHHHh
Confidence 6799999999999999998754
No 440
>cd02020 CMPK Cytidine monophosphate kinase (CMPK) catalyzes the reversible phosphorylation of cytidine monophosphate (CMP) to produce cytidine diphosphate (CDP), using ATP as the preferred phosphoryl donor.
Probab=93.99 E-value=0.04 Score=52.08 Aligned_cols=23 Identities=39% Similarity=0.455 Sum_probs=21.0
Q ss_pred EEEEEecCCChhHHHHHHHHHHh
Q 002220 211 TIGIWGMGGIGKTTLAGAVFKLI 233 (951)
Q Consensus 211 vv~I~G~gGiGKTtLA~~~~~~~ 233 (951)
+|.|.|.+|.||||+|+.++...
T Consensus 1 ~I~i~G~~GsGKst~a~~la~~~ 23 (147)
T cd02020 1 IIAIDGPAGSGKSTVAKLLAKKL 23 (147)
T ss_pred CEEEECCCCCCHHHHHHHHHHHh
Confidence 58999999999999999999865
No 441
>cd02025 PanK Pantothenate kinase (PanK) catalyzes the phosphorylation of pantothenic acid to form 4'-phosphopantothenic, which is the first of five steps in coenzyme A (CoA) biosynthetic pathway. The reaction carried out by this enzyme is a key regulatory point in CoA biosynthesis.
Probab=93.96 E-value=0.038 Score=56.04 Aligned_cols=24 Identities=42% Similarity=0.524 Sum_probs=21.9
Q ss_pred EEEEEecCCChhHHHHHHHHHHhh
Q 002220 211 TIGIWGMGGIGKTTLAGAVFKLIS 234 (951)
Q Consensus 211 vv~I~G~gGiGKTtLA~~~~~~~~ 234 (951)
+|+|.|.+|.||||+|+.+...+.
T Consensus 1 IigI~G~sGSGKTTla~~L~~~l~ 24 (220)
T cd02025 1 IIGIAGSVAVGKSTTARVLQALLS 24 (220)
T ss_pred CEEeeCCCCCCHHHHHHHHHHHHh
Confidence 589999999999999999998765
No 442
>TIGR01351 adk adenylate kinases. Adenylate kinase (EC 2.7.4.3) converts ATP + AMP to ADP + ADP, that is, uses ATP as a phosphate donor for AMP. Most members of this family are known or believed to be adenylate kinase. However, some members accept other nucleotide triphosphates as donors, may be unable to use ATP, and may fail to complement adenylate kinase mutants. An example of a nucleoside-triphosphate--adenylate kinase (EC 2.7.4.10) is a GTP:AMP phosphotransferase. This family is designated subfamily rather than equivalog for this reason.
Probab=93.95 E-value=0.11 Score=52.41 Aligned_cols=22 Identities=27% Similarity=0.282 Sum_probs=19.8
Q ss_pred EEEEecCCChhHHHHHHHHHHh
Q 002220 212 IGIWGMGGIGKTTLAGAVFKLI 233 (951)
Q Consensus 212 v~I~G~gGiGKTtLA~~~~~~~ 233 (951)
|.|.|++|.||||+|+.++.++
T Consensus 2 I~i~G~pGsGKsT~a~~La~~~ 23 (210)
T TIGR01351 2 LVLLGPPGSGKGTQAKRIAEKY 23 (210)
T ss_pred EEEECCCCCCHHHHHHHHHHHc
Confidence 6799999999999999998754
No 443
>TIGR00455 apsK adenylylsulfate kinase (apsK). Important residue (active site in E.coli) is residue 100 of the seed alignment.
Probab=93.94 E-value=0.19 Score=49.57 Aligned_cols=27 Identities=33% Similarity=0.374 Sum_probs=23.9
Q ss_pred CcEEEEEEecCCChhHHHHHHHHHHhh
Q 002220 208 DFRTIGIWGMGGIGKTTLAGAVFKLIS 234 (951)
Q Consensus 208 ~~~vv~I~G~gGiGKTtLA~~~~~~~~ 234 (951)
...++.|.|.+|.||||+|+.+.....
T Consensus 17 ~~~~i~i~G~~GsGKstla~~l~~~l~ 43 (184)
T TIGR00455 17 RGVVIWLTGLSGSGKSTIANALEKKLE 43 (184)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHH
Confidence 457999999999999999999998764
No 444
>cd00071 GMPK Guanosine monophosphate kinase (GMPK, EC 2.7.4.8), also known as guanylate kinase (GKase), catalyzes the reversible phosphoryl transfer from adenosine triphosphate (ATP) to guanosine monophosphate (GMP) to yield adenosine diphosphate (ADP) and guanosine diphosphate (GDP). It plays an essential role in the biosynthesis of guanosine triphosphate (GTP). This enzyme is also important for the activation of some antiviral and anticancer agents, such as acyclovir, ganciclovir, carbovir, and thiopurines.
Probab=93.94 E-value=0.037 Score=51.45 Aligned_cols=27 Identities=30% Similarity=0.480 Sum_probs=22.3
Q ss_pred EEEEEecCCChhHHHHHHHHHHhhccc
Q 002220 211 TIGIWGMGGIGKTTLAGAVFKLISREF 237 (951)
Q Consensus 211 vv~I~G~gGiGKTtLA~~~~~~~~~~f 237 (951)
.|+|+|+.|+|||||++.++......|
T Consensus 1 ~i~i~GpsGsGKstl~~~L~~~~~~~~ 27 (137)
T cd00071 1 LIVLSGPSGVGKSTLLKRLLEEFDPNF 27 (137)
T ss_pred CEEEECCCCCCHHHHHHHHHhcCCccc
Confidence 378999999999999999988654443
No 445
>PRK13949 shikimate kinase; Provisional
Probab=93.94 E-value=0.043 Score=53.10 Aligned_cols=24 Identities=38% Similarity=0.427 Sum_probs=21.6
Q ss_pred EEEEEecCCChhHHHHHHHHHHhh
Q 002220 211 TIGIWGMGGIGKTTLAGAVFKLIS 234 (951)
Q Consensus 211 vv~I~G~gGiGKTtLA~~~~~~~~ 234 (951)
-|.|+|++|.||||+|+.++..+.
T Consensus 3 ~I~liG~~GsGKstl~~~La~~l~ 26 (169)
T PRK13949 3 RIFLVGYMGAGKTTLGKALARELG 26 (169)
T ss_pred EEEEECCCCCCHHHHHHHHHHHcC
Confidence 588999999999999999998664
No 446
>TIGR02782 TrbB_P P-type conjugative transfer ATPase TrbB. The TrbB protein is found in the trb locus of Agrobacterium Ti plasmids where it is involved in the type IV secretion system for plasmid conjugative transfer. TrbB is a homolog of the vir system VirB11 ATPase, and the Flp pilus sytem ATPase TadA.
Probab=93.94 E-value=0.17 Score=53.92 Aligned_cols=89 Identities=20% Similarity=0.204 Sum_probs=54.2
Q ss_pred EEEEEEecCCChhHHHHHHHHHHhhccc--cceeecccccchhcCCCChHHHHHHHHHHHhcCccccCCCCChHHHHHHh
Q 002220 210 RTIGIWGMGGIGKTTLAGAVFKLISREF--EGKCFMPNVREESENGGGLVYLRDRVVSEIFQEDIKIGTPYLPDYIVERL 287 (951)
Q Consensus 210 ~vv~I~G~gGiGKTtLA~~~~~~~~~~f--~~~~~~~~~~~~~~~~~~~~~l~~~il~~l~~~~~~~~~~~~~~~l~~~l 287 (951)
+.+.|+|..|.||||+++++++.+.... ..++-+.+..+..-....... +. . ........+.++..|
T Consensus 133 ~~ilI~G~tGSGKTTll~al~~~i~~~~~~~ri~tiEd~~El~~~~~~~v~--------~~-~--~~~~~~~~~~l~~aL 201 (299)
T TIGR02782 133 KNILVVGGTGSGKTTLANALLAEIAKNDPTDRVVIIEDTRELQCAAPNVVQ--------LR-T--SDDAISMTRLLKATL 201 (299)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHhhccCCCceEEEECCchhhcCCCCCEEE--------EE-e--cCCCCCHHHHHHHHh
Confidence 5678999999999999999998775432 234444433332110000000 00 0 001112227888888
Q ss_pred cCCcEEEEEeCCCChHHHHHHH
Q 002220 288 NRMKVLTVLDDVNKVRQLHYLA 309 (951)
Q Consensus 288 ~~~~~LlVlDdv~~~~~~~~l~ 309 (951)
+..+=-+|+..+.+.+.++.+.
T Consensus 202 R~~pD~iivGEiR~~ea~~~l~ 223 (299)
T TIGR02782 202 RLRPDRIIVGEVRGGEALDLLK 223 (299)
T ss_pred cCCCCEEEEeccCCHHHHHHHH
Confidence 8889899999999988766543
No 447
>cd01428 ADK Adenylate kinase (ADK) catalyzes the reversible phosphoryl transfer from adenosine triphosphates (ATP) to adenosine monophosphates (AMP) and to yield adenosine diphosphates (ADP). This enzyme is required for the biosynthesis of ADP and is essential for homeostasis of adenosine phosphates.
Probab=93.93 E-value=0.28 Score=48.81 Aligned_cols=22 Identities=36% Similarity=0.298 Sum_probs=20.1
Q ss_pred EEEEecCCChhHHHHHHHHHHh
Q 002220 212 IGIWGMGGIGKTTLAGAVFKLI 233 (951)
Q Consensus 212 v~I~G~gGiGKTtLA~~~~~~~ 233 (951)
|.|.|++|.||||+|+.++.++
T Consensus 2 I~i~G~pGsGKst~a~~La~~~ 23 (194)
T cd01428 2 ILLLGPPGSGKGTQAERLAKKY 23 (194)
T ss_pred EEEECCCCCCHHHHHHHHHHHc
Confidence 7899999999999999998864
No 448
>TIGR03877 thermo_KaiC_1 KaiC domain protein, Ph0284 family. Members of this family contain a single copy of the KaiC domain (pfam06745) that occurs in two copies of the circadian clock protein kinase KaiC itself. Members occur primarily in thermophilic archaea and in Thermotoga.
Probab=93.93 E-value=0.088 Score=54.33 Aligned_cols=49 Identities=16% Similarity=0.193 Sum_probs=36.3
Q ss_pred HHHHHhhccCCCCcEEEEEEecCCChhHHHHHHHHHHhhccccceeecc
Q 002220 196 QKIKSLLCIGLPDFRTIGIWGMGGIGKTTLAGAVFKLISREFEGKCFMP 244 (951)
Q Consensus 196 ~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~~~~~~~~~f~~~~~~~ 244 (951)
..|.++|..+=+.-.++.|.|.+|.|||++|.++......+-..++|+.
T Consensus 8 ~~LD~~l~GG~~~gs~~lI~G~pGsGKT~la~~~l~~~~~~ge~~lyvs 56 (237)
T TIGR03877 8 PGMDEILHGGIPERNVVLLSGGPGTGKSIFSQQFLWNGLQMGEPGIYVA 56 (237)
T ss_pred HhHHHHhcCCCcCCeEEEEEcCCCCCHHHHHHHHHHHHHHcCCcEEEEE
Confidence 3455666544466789999999999999999998765444556677774
No 449
>PLN03187 meiotic recombination protein DMC1 homolog; Provisional
Probab=93.93 E-value=0.1 Score=56.34 Aligned_cols=49 Identities=20% Similarity=0.161 Sum_probs=33.3
Q ss_pred HHHHHhhccCCCCcEEEEEEecCCChhHHHHHHHHHHhh--c----cccceeecc
Q 002220 196 QKIKSLLCIGLPDFRTIGIWGMGGIGKTTLAGAVFKLIS--R----EFEGKCFMP 244 (951)
Q Consensus 196 ~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~~~~~~~--~----~f~~~~~~~ 244 (951)
..|.++|..+=..-++.-|+|.+|+|||+|+.+++-... . .-..++|++
T Consensus 113 ~~LD~lLgGGi~~G~ItEI~G~~GsGKTql~lqlav~~qlp~~~gg~~~~vvyId 167 (344)
T PLN03187 113 QALDELLGGGIETRCITEAFGEFRSGKTQLAHTLCVTTQLPTEMGGGNGKVAYID 167 (344)
T ss_pred HhHHhhcCCCCCCCeEEEEecCCCCChhHHHHHHHHHHhcchhhCCCCceEEEEE
Confidence 345556654435567888999999999999998874321 1 123567775
No 450
>COG1121 ZnuC ABC-type Mn/Zn transport systems, ATPase component [Inorganic ion transport and metabolism]
Probab=93.92 E-value=0.11 Score=52.93 Aligned_cols=51 Identities=20% Similarity=0.270 Sum_probs=34.5
Q ss_pred HHHHHHhcCCcEEEEEeCC----CCh--HHHHHHHhccCCCCCCCEEEEEeCCchhhhh
Q 002220 281 DYIVERLNRMKVLTVLDDV----NKV--RQLHYLACVLDQFGPGSRIIITTRDKRILDD 333 (951)
Q Consensus 281 ~~l~~~l~~~~~LlVlDdv----~~~--~~~~~l~~~~~~~~~gs~IlvTtR~~~v~~~ 333 (951)
..+.+.|.+++=|++||.- +.. ..+-.+...+.. .|..||++|-|-.....
T Consensus 148 V~lARAL~~~p~lllLDEP~~gvD~~~~~~i~~lL~~l~~--eg~tIl~vtHDL~~v~~ 204 (254)
T COG1121 148 VLLARALAQNPDLLLLDEPFTGVDVAGQKEIYDLLKELRQ--EGKTVLMVTHDLGLVMA 204 (254)
T ss_pred HHHHHHhccCCCEEEecCCcccCCHHHHHHHHHHHHHHHH--CCCEEEEEeCCcHHhHh
Confidence 5667888899999999963 322 234445555543 38889999988755443
No 451
>PRK06217 hypothetical protein; Validated
Probab=93.92 E-value=0.041 Score=54.23 Aligned_cols=23 Identities=39% Similarity=0.499 Sum_probs=21.2
Q ss_pred EEEEEecCCChhHHHHHHHHHHh
Q 002220 211 TIGIWGMGGIGKTTLAGAVFKLI 233 (951)
Q Consensus 211 vv~I~G~gGiGKTtLA~~~~~~~ 233 (951)
.|.|.|.+|.||||+|+++....
T Consensus 3 ~I~i~G~~GsGKSTla~~L~~~l 25 (183)
T PRK06217 3 RIHITGASGSGTTTLGAALAERL 25 (183)
T ss_pred EEEEECCCCCCHHHHHHHHHHHc
Confidence 48999999999999999999865
No 452
>cd03215 ABC_Carb_Monos_II This family represents domain II of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. In members of Carb_Monos family the single hydrophobic gene product forms a homodimer, while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.
Probab=93.92 E-value=0.25 Score=48.60 Aligned_cols=24 Identities=46% Similarity=0.623 Sum_probs=21.4
Q ss_pred cEEEEEEecCCChhHHHHHHHHHH
Q 002220 209 FRTIGIWGMGGIGKTTLAGAVFKL 232 (951)
Q Consensus 209 ~~vv~I~G~gGiGKTtLA~~~~~~ 232 (951)
-.+++|.|..|.|||||++.++..
T Consensus 26 G~~~~i~G~nGsGKSTLl~~l~G~ 49 (182)
T cd03215 26 GEIVGIAGLVGNGQTELAEALFGL 49 (182)
T ss_pred CcEEEEECCCCCCHHHHHHHHhCC
Confidence 358999999999999999999864
No 453
>COG1936 Predicted nucleotide kinase (related to CMP and AMP kinases) [Nucleotide transport and metabolism]
Probab=93.90 E-value=0.043 Score=51.41 Aligned_cols=20 Identities=40% Similarity=0.521 Sum_probs=18.5
Q ss_pred EEEEEecCCChhHHHHHHHH
Q 002220 211 TIGIWGMGGIGKTTLAGAVF 230 (951)
Q Consensus 211 vv~I~G~gGiGKTtLA~~~~ 230 (951)
.|+|.|.||+||||+|+.+.
T Consensus 2 ~I~ITGTPGvGKTT~~~~L~ 21 (180)
T COG1936 2 LIAITGTPGVGKTTVCKLLR 21 (180)
T ss_pred eEEEeCCCCCchHHHHHHHH
Confidence 58999999999999999987
No 454
>TIGR01069 mutS2 MutS2 family protein. Function of MutS2 is unknown. It should not be considered a DNA mismatch repair protein. It is likely a DNA mismatch binding protein of unknown cellular function.
Probab=93.88 E-value=0.12 Score=62.34 Aligned_cols=113 Identities=14% Similarity=0.037 Sum_probs=56.5
Q ss_pred CCcEEEEEeCCCC---hHHHHHH----HhccCCCCCCCEEEEEeCCchhhhhcC-CCccceEEcCCCChhhhHHHHhhhh
Q 002220 289 RMKVLTVLDDVNK---VRQLHYL----ACVLDQFGPGSRIIITTRDKRILDDFG-VCDTDIYEVNKLRFHEALVLFSNFA 360 (951)
Q Consensus 289 ~~~~LlVlDdv~~---~~~~~~l----~~~~~~~~~gs~IlvTtR~~~v~~~~~-~~~~~~~~l~~L~~~~a~~Lf~~~~ 360 (951)
..+-|+++|..-. ......+ ...+. ..|+.+|+||-...+..... ........+. ++.+ ... +..+.
T Consensus 401 ~~~sLvLlDE~g~GtD~~eg~ala~aiLe~l~--~~g~~viitTH~~eL~~~~~~~~~v~~~~~~-~d~~-~l~-p~Ykl 475 (771)
T TIGR01069 401 TENSLVLFDELGAGTDPDEGSALAISILEYLL--KQNAQVLITTHYKELKALMYNNEGVENASVL-FDEE-TLS-PTYKL 475 (771)
T ss_pred CCCcEEEecCCCCCCCHHHHHHHHHHHHHHHH--hcCCEEEEECChHHHHHHhcCCCCeEEeEEE-EcCC-CCc-eEEEE
Confidence 4789999999853 2222222 22322 35788999999887643221 1100111111 1111 111 11111
Q ss_pred ccCCCCChhHHHHHHHHHHHcCCCchHHHHHhhhcCCCCHHHHHHHHHHHh
Q 002220 361 FKENQCPGDLLALLERVLKYANGNPLALRVLGSFFHRKSKSDWEKALENLN 411 (951)
Q Consensus 361 ~~~~~~~~~~~~~~~~i~~~~~g~PLal~~~~~~L~~~~~~~w~~~l~~l~ 411 (951)
....+.. ..|-+|++++ |+|-.+..-|..+......++..++.++.
T Consensus 476 -~~G~~g~---S~a~~iA~~~-Glp~~ii~~A~~~~~~~~~~~~~li~~L~ 521 (771)
T TIGR01069 476 -LKGIPGE---SYAFEIAQRY-GIPHFIIEQAKTFYGEFKEEINVLIEKLS 521 (771)
T ss_pred -CCCCCCC---cHHHHHHHHh-CcCHHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence 1111111 2355666655 78888877777766555556666666554
No 455
>PRK10463 hydrogenase nickel incorporation protein HypB; Provisional
Probab=93.87 E-value=0.11 Score=54.28 Aligned_cols=46 Identities=13% Similarity=0.138 Sum_probs=34.4
Q ss_pred HHHHHhhccCCCCcEEEEEEecCCChhHHHHHHHHHHhhccccceeec
Q 002220 196 QKIKSLLCIGLPDFRTIGIWGMGGIGKTTLAGAVFKLISREFEGKCFM 243 (951)
Q Consensus 196 ~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~~~~~~~~~f~~~~~~ 243 (951)
++.++++. ..+..+|.|.|.+|.|||||+..+.+.++......+..
T Consensus 93 ~~~r~~~~--~~~~~~v~l~G~pGsGKTTLl~~l~~~l~~~~~~~VI~ 138 (290)
T PRK10463 93 ERNRARFA--ARKQLVLNLVSSPGSGKTTLLTETLMRLKDSVPCAVIE 138 (290)
T ss_pred HHHHHHHH--hcCCeEEEEECCCCCCHHHHHHHHHHHhccCCCEEEEC
Confidence 33444442 35689999999999999999999999877665544443
No 456
>COG1875 NYN ribonuclease and ATPase of PhoH family domains [General function prediction only]
Probab=93.86 E-value=0.57 Score=49.47 Aligned_cols=25 Identities=36% Similarity=0.317 Sum_probs=21.8
Q ss_pred CCCcEEEEEEecCCChhHHHHHHHH
Q 002220 206 LPDFRTIGIWGMGGIGKTTLAGAVF 230 (951)
Q Consensus 206 ~~~~~vv~I~G~gGiGKTtLA~~~~ 230 (951)
.+++..|.+.|.+|.|||-||.+..
T Consensus 242 d~dI~lV~L~G~AGtGKTlLALaAg 266 (436)
T COG1875 242 DDDIDLVSLGGKAGTGKTLLALAAG 266 (436)
T ss_pred CCCCCeEEeeccCCccHhHHHHHHH
Confidence 3678999999999999999998754
No 457
>CHL00206 ycf2 Ycf2; Provisional
Probab=93.85 E-value=0.31 Score=62.46 Aligned_cols=27 Identities=22% Similarity=0.158 Sum_probs=23.3
Q ss_pred CCcEEEEEEecCCChhHHHHHHHHHHh
Q 002220 207 PDFRTIGIWGMGGIGKTTLAGAVFKLI 233 (951)
Q Consensus 207 ~~~~vv~I~G~gGiGKTtLA~~~~~~~ 233 (951)
...+-|.++|++|.|||.||+++|...
T Consensus 1628 ~pPKGILLiGPPGTGKTlLAKALA~es 1654 (2281)
T CHL00206 1628 SPSRGILVIGSIGTGRSYLVKYLATNS 1654 (2281)
T ss_pred CCCCceEEECCCCCCHHHHHHHHHHhc
Confidence 346778999999999999999999854
No 458
>PRK13948 shikimate kinase; Provisional
Probab=93.85 E-value=0.052 Score=53.00 Aligned_cols=27 Identities=15% Similarity=0.267 Sum_probs=23.9
Q ss_pred CcEEEEEEecCCChhHHHHHHHHHHhh
Q 002220 208 DFRTIGIWGMGGIGKTTLAGAVFKLIS 234 (951)
Q Consensus 208 ~~~vv~I~G~gGiGKTtLA~~~~~~~~ 234 (951)
..+.|.++|+.|.||||+++.++++..
T Consensus 9 ~~~~I~LiG~~GsGKSTvg~~La~~lg 35 (182)
T PRK13948 9 PVTWVALAGFMGTGKSRIGWELSRALM 35 (182)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHcC
Confidence 457899999999999999999998764
No 459
>TIGR01650 PD_CobS cobaltochelatase, CobS subunit. This model describes the aerobic cobalamin pathway Pseudomonas denitrificans CobS gene product, which is a cobalt chelatase subunit, with a MW ~37 kDa. The aerobic pathway cobalt chelatase is a heterotrimeric, ATP-dependent enzyme that catalyzes cobalt insertion during cobalamin biosynthesis. The other two subunits are the P. denitrificans CobT (TIGR01651) and CobN (pfam02514 CobN/Magnesium Chelatase) proteins. To avoid potential confusion with the nonhomologous Salmonella typhimurium/E.coli cobS gene product, the P. denitrificans gene symbol is not used in the name of this model.
Probab=93.84 E-value=0.11 Score=55.12 Aligned_cols=53 Identities=13% Similarity=0.114 Sum_probs=36.5
Q ss_pred CCCCCCcccchhhHHHHHHhhccCCCCcEEEEEEecCCChhHHHHHHHHHHhhcccc
Q 002220 182 STYSDGFVGLNSRIQKIKSLLCIGLPDFRTIGIWGMGGIGKTTLAGAVFKLISREFE 238 (951)
Q Consensus 182 ~~~~~~~vGr~~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~~~~~~~~~f~ 238 (951)
|...+.++=..+....+...+.. .+.|.|.|.+|+||||+|+.++..+...|-
T Consensus 41 p~~d~~y~f~~~~~~~vl~~l~~----~~~ilL~G~pGtGKTtla~~lA~~l~~~~~ 93 (327)
T TIGR01650 41 PDIDPAYLFDKATTKAICAGFAY----DRRVMVQGYHGTGKSTHIEQIAARLNWPCV 93 (327)
T ss_pred CCCCCCccCCHHHHHHHHHHHhc----CCcEEEEeCCCChHHHHHHHHHHHHCCCeE
Confidence 33344444444455556666632 246899999999999999999998765554
No 460
>cd02023 UMPK Uridine monophosphate kinase (UMPK, EC 2.7.1.48), also known as uridine kinase or uridine-cytidine kinase (UCK), catalyzes the reversible phosphoryl transfer from ATP to uridine or cytidine to yield UMP or CMP. In the primidine nucleotide-salvage pathway, this enzyme combined with nucleoside diphosphate kinases further phosphorylates UMP and CMP to form UTP and CTP. This kinase also catalyzes the phosphorylation of several cytotoxic ribonucleoside analogs such as 5-flurrouridine and cyclopentenyl-cytidine.
Probab=93.82 E-value=0.04 Score=55.21 Aligned_cols=23 Identities=43% Similarity=0.629 Sum_probs=21.0
Q ss_pred EEEEEecCCChhHHHHHHHHHHh
Q 002220 211 TIGIWGMGGIGKTTLAGAVFKLI 233 (951)
Q Consensus 211 vv~I~G~gGiGKTtLA~~~~~~~ 233 (951)
+|+|.|.+|+||||||+.+...+
T Consensus 1 iigi~G~~GsGKSTl~~~l~~~l 23 (198)
T cd02023 1 IIGIAGGSGSGKTTVAEEIIEQL 23 (198)
T ss_pred CEEEECCCCCCHHHHHHHHHHHh
Confidence 58999999999999999998765
No 461
>PF00625 Guanylate_kin: Guanylate kinase; InterPro: IPR008144 Guanylate kinase (2.7.4.8 from EC) (GK) [] catalyzes the ATP-dependent phosphorylation of GMP into GDP. It is essential for recycling GMP and indirectly, cGMP. In prokaryotes (such as Escherichia coli), lower eukaryotes (such as yeast) and in vertebrates, GK is a highly conserved monomeric protein of about 200 amino acids. GK has been shown [, , ] to be structurally similar to protein A57R (or SalG2R) from various strains of Vaccinia virus. Proteins containing one or more copies of the DHR domain, an SH3 domain as well as a C-terminal GK-like domain, are collectively termed MAGUKs (membrane-associated guanylate kinase homologs) [], and include Drosophila lethal(1)discs large-1 tumor suppressor protein (gene dlg1); mammalian tight junction protein Zo-1; a family of mammalian synaptic proteins that seem to interact with the cytoplasmic tail of NMDA receptor subunits (SAP90/PSD-95, CHAPSYN-110/PSD-93, SAP97/DLG1 and SAP102); vertebrate 55kDa erythrocyte membrane protein (p55); Caenorhabditis elegans protein lin-2; rat protein CASK; and human proteins DLG2 and DLG3. There is an ATP-binding site (P-loop) in the N-terminal section of GK, which is not conserved in the GK-like domain of the above proteins. However these proteins retain the residues known, in GK, to be involved in the binding of GMP.; GO: 0005515 protein binding; PDB: 3UAT_A 3KFV_A 2ANC_F 2F3T_E 2ANB_A 2AN9_A 1S96_A 2F3R_B 3TR0_A 1LVG_A ....
Probab=93.81 E-value=0.055 Score=53.37 Aligned_cols=34 Identities=29% Similarity=0.344 Sum_probs=29.1
Q ss_pred cEEEEEEecCCChhHHHHHHHHHHhhccccceee
Q 002220 209 FRTIGIWGMGGIGKTTLAGAVFKLISREFEGKCF 242 (951)
Q Consensus 209 ~~vv~I~G~gGiGKTtLA~~~~~~~~~~f~~~~~ 242 (951)
.+++.|+|+.|+|||||++.+.......|...+.
T Consensus 2 ~r~ivl~Gpsg~GK~~l~~~L~~~~~~~~~~~v~ 35 (183)
T PF00625_consen 2 RRPIVLVGPSGSGKSTLAKRLIQEFPDKFGRVVS 35 (183)
T ss_dssp SSEEEEESSTTSSHHHHHHHHHHHSTTTEEEEEE
T ss_pred CCEEEEECCCCCCHHHHHHHHHHhccccccccee
Confidence 4789999999999999999999988888864444
No 462
>cd01125 repA Hexameric Replicative Helicase RepA. RepA is encoded by a plasmid, which is found in most Gram negative bacteria. RepA is a 5'-3' DNA helicase which can utilize ATP, GTP and CTP to a lesser extent.
Probab=93.76 E-value=0.48 Score=48.96 Aligned_cols=24 Identities=21% Similarity=0.289 Sum_probs=20.7
Q ss_pred EEEEEecCCChhHHHHHHHHHHhh
Q 002220 211 TIGIWGMGGIGKTTLAGAVFKLIS 234 (951)
Q Consensus 211 vv~I~G~gGiGKTtLA~~~~~~~~ 234 (951)
+..|+|+||+|||+||..++-.+.
T Consensus 3 ~~ll~g~~G~GKS~lal~la~~va 26 (239)
T cd01125 3 VSALVAPGGTGKSSLLLVLALAMA 26 (239)
T ss_pred eeEEEcCCCCCHHHHHHHHHHHHh
Confidence 567899999999999999987654
No 463
>cd03233 ABC_PDR_domain1 The pleiotropic drug resistance (PDR) family of ATP-binding cassette (ABC) transporters. PDR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=93.74 E-value=0.2 Score=50.30 Aligned_cols=27 Identities=22% Similarity=0.159 Sum_probs=22.9
Q ss_pred CcEEEEEEecCCChhHHHHHHHHHHhh
Q 002220 208 DFRTIGIWGMGGIGKTTLAGAVFKLIS 234 (951)
Q Consensus 208 ~~~vv~I~G~gGiGKTtLA~~~~~~~~ 234 (951)
.-.+++|+|..|.|||||++.++-...
T Consensus 32 ~Ge~~~i~G~nGsGKSTLl~~l~G~~~ 58 (202)
T cd03233 32 PGEMVLVLGRPGSGCSTLLKALANRTE 58 (202)
T ss_pred CCcEEEEECCCCCCHHHHHHHhcccCC
Confidence 346999999999999999999886543
No 464
>cd02021 GntK Gluconate kinase (GntK) catalyzes the phosphoryl transfer from ATP to gluconate. The resulting product gluconate-6-phoshate is an important precursor of gluconate metabolism. GntK acts as a dimmer composed of two identical subunits.
Probab=93.74 E-value=0.044 Score=52.02 Aligned_cols=22 Identities=32% Similarity=0.478 Sum_probs=19.9
Q ss_pred EEEEEecCCChhHHHHHHHHHH
Q 002220 211 TIGIWGMGGIGKTTLAGAVFKL 232 (951)
Q Consensus 211 vv~I~G~gGiGKTtLA~~~~~~ 232 (951)
++.|.|++|+||||+|+.+...
T Consensus 1 li~l~G~~GsGKST~a~~l~~~ 22 (150)
T cd02021 1 IIVVMGVSGSGKSTVGKALAER 22 (150)
T ss_pred CEEEEcCCCCCHHHHHHHHHhh
Confidence 3789999999999999999876
No 465
>KOG3347 consensus Predicted nucleotide kinase/nuclear protein involved oxidative stress response [Nucleotide transport and metabolism]
Probab=93.73 E-value=0.051 Score=49.24 Aligned_cols=23 Identities=35% Similarity=0.387 Sum_probs=20.4
Q ss_pred EEEEEEecCCChhHHHHHHHHHH
Q 002220 210 RTIGIWGMGGIGKTTLAGAVFKL 232 (951)
Q Consensus 210 ~vv~I~G~gGiGKTtLA~~~~~~ 232 (951)
.-|.|.|.+|+||||+|.+++..
T Consensus 8 PNILvtGTPG~GKstl~~~lae~ 30 (176)
T KOG3347|consen 8 PNILVTGTPGTGKSTLAERLAEK 30 (176)
T ss_pred CCEEEeCCCCCCchhHHHHHHHH
Confidence 45889999999999999999863
No 466
>COG5635 Predicted NTPase (NACHT family) [Signal transduction mechanisms]
Probab=93.73 E-value=0.34 Score=59.78 Aligned_cols=196 Identities=19% Similarity=0.216 Sum_probs=97.7
Q ss_pred EEEEEEecCCChhHHHHHHHHHHhhccc----cceeecc--cccchhcCCCChHHHHHHHHHHHhcCccccCCCCChHHH
Q 002220 210 RTIGIWGMGGIGKTTLAGAVFKLISREF----EGKCFMP--NVREESENGGGLVYLRDRVVSEIFQEDIKIGTPYLPDYI 283 (951)
Q Consensus 210 ~vv~I~G~gGiGKTtLA~~~~~~~~~~f----~~~~~~~--~~~~~~~~~~~~~~l~~~il~~l~~~~~~~~~~~~~~~l 283 (951)
.-+.|+|.+|.||||+.+.++-....+. +..+|+. ............ .+..-+...+... ... .......
T Consensus 223 ~~~~Ilg~pGsGKTtfl~~lA~~~~~~~~~~~~vpi~~~l~~~~~~~~~~~q~-~~~~~l~~~~~~~-~~~--~~~~~~~ 298 (824)
T COG5635 223 AKLLILGAPGSGKTTFLQRLALWLAQRTLEPEDVPIFLLLNAFALARKFEKQL-SLIDYLAEELFSQ-GIA--KQLIEAH 298 (824)
T ss_pred hheeeecCCCCCceehHHHHHHHhccCcCCcccCceeeechhHHHhhhhHhhc-cHHHHHHHHHhcc-CCc--chhhHHH
Confidence 4788999999999999999986433222 1222221 111111000000 2222222222211 111 1111222
Q ss_pred HHHhcCCcEEEEEeCCCChHH------HHHHHhccCCCCCCCEEEEEeCCchhhhhcCCCccceEEcCCCChhhhHHHHh
Q 002220 284 VERLNRMKVLTVLDDVNKVRQ------LHYLACVLDQFGPGSRIIITTRDKRILDDFGVCDTDIYEVNKLRFHEALVLFS 357 (951)
Q Consensus 284 ~~~l~~~~~LlVlDdv~~~~~------~~~l~~~~~~~~~gs~IlvTtR~~~v~~~~~~~~~~~~~l~~L~~~~a~~Lf~ 357 (951)
.+.+...++++.+|+++.... ...+....++ -+.+++|+|+|....-...... ..+++..+.++.-.+...
T Consensus 299 ~e~l~~g~~llLlDGlDe~~~~~~~~~~~~i~~f~~~-~~~~~~iltcR~~~~~~~~~~f--~~~ei~~~~~~~i~~~~~ 375 (824)
T COG5635 299 QELLKTGKLLLLLDGLDELEPKNQRALIREINKFLQE-YPDAQVLLTCRPDTYKEEFKGF--AVFEIYKFLDLQINQFIL 375 (824)
T ss_pred HHHHhccchhhHhhccchhhhhhHHHHHHHHHHHhhh-ccCCeEEEEeccchhhhhhhhh--hhccchhhhHHHHHHHHH
Confidence 478889999999999875532 2222222222 4588999999877543332222 556666666665553333
Q ss_pred hh--------hccCCCCC--hhHHHH---HHHHHHHcCCCchHHHHHhhhcC------CCCHHHHHHHHHHHhc
Q 002220 358 NF--------AFKENQCP--GDLLAL---LERVLKYANGNPLALRVLGSFFH------RKSKSDWEKALENLNR 412 (951)
Q Consensus 358 ~~--------~~~~~~~~--~~~~~~---~~~i~~~~~g~PLal~~~~~~L~------~~~~~~w~~~l~~l~~ 412 (951)
.. .++..... .....+ ..+-++.....|+.+.+.+..-. ....+-++.+++.+-.
T Consensus 376 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ik~l~~~p~~L~l~c~~~~~~~~lP~~~~~ly~~~~~~~~~ 449 (824)
T COG5635 376 YQWLDAFIEDWFGDSRLLAKKLLERLKLPENRRIKELALTPLLLALECLIWQAQGDLPESRAELYEQAVDALLG 449 (824)
T ss_pred HHHHHHHHHhhhcccchhhHHHHHHhcchhhHHHHHhccCHHHHHHHHHhhhHHhhCCCCcHHHHHHHHHHHHh
Confidence 11 12221111 011111 12234445788999888874332 2355667777665543
No 467
>cd00464 SK Shikimate kinase (SK) is the fifth enzyme in the shikimate pathway, a seven-step biosynthetic pathway which converts erythrose-4-phosphate to chorismic acid, found in bacteria, fungi and plants. Chorismic acid is a important intermediate in the synthesis of aromatic compounds, such as aromatic amino acids, p-aminobenzoic acid, folate and ubiquinone. Shikimate kinase catalyses the phosphorylation of the 3-hydroxyl group of shikimic acid using ATP.
Probab=93.72 E-value=0.052 Score=51.76 Aligned_cols=22 Identities=41% Similarity=0.517 Sum_probs=20.3
Q ss_pred EEEEecCCChhHHHHHHHHHHh
Q 002220 212 IGIWGMGGIGKTTLAGAVFKLI 233 (951)
Q Consensus 212 v~I~G~gGiGKTtLA~~~~~~~ 233 (951)
|.|+|++|.||||+|+.++...
T Consensus 2 i~l~G~~GsGKstla~~la~~l 23 (154)
T cd00464 2 IVLIGMMGAGKTTVGRLLAKAL 23 (154)
T ss_pred EEEEcCCCCCHHHHHHHHHHHh
Confidence 7899999999999999999865
No 468
>COG3640 CooC CO dehydrogenase maturation factor [Cell division and chromosome partitioning]
Probab=93.72 E-value=0.15 Score=50.44 Aligned_cols=26 Identities=42% Similarity=0.672 Sum_probs=21.8
Q ss_pred EEEEEecCCChhHHHHHHHHHHhhcc
Q 002220 211 TIGIWGMGGIGKTTLAGAVFKLISRE 236 (951)
Q Consensus 211 vv~I~G~gGiGKTtLA~~~~~~~~~~ 236 (951)
.|+|+|-||+||||+|..++.++..+
T Consensus 2 kIaI~GKGG~GKTtiaalll~~l~~~ 27 (255)
T COG3640 2 KIAITGKGGVGKTTIAALLLKRLLSK 27 (255)
T ss_pred eEEEecCCCccHHHHHHHHHHHHHhc
Confidence 58999999999999999977665444
No 469
>COG2019 AdkA Archaeal adenylate kinase [Nucleotide transport and metabolism]
Probab=93.70 E-value=0.065 Score=49.74 Aligned_cols=25 Identities=32% Similarity=0.466 Sum_probs=22.2
Q ss_pred cEEEEEEecCCChhHHHHHHHHHHh
Q 002220 209 FRTIGIWGMGGIGKTTLAGAVFKLI 233 (951)
Q Consensus 209 ~~vv~I~G~gGiGKTtLA~~~~~~~ 233 (951)
.++++|+|.+|+||||+.+.+....
T Consensus 4 ~kvvvitGVpGvGKTTVl~~~~~~l 28 (189)
T COG2019 4 RKVVVITGVPGVGKTTVLKIALKEL 28 (189)
T ss_pred ceEEEEEcCCCCChHHHHHHHHHHH
Confidence 5899999999999999999887755
No 470
>TIGR02322 phosphon_PhnN phosphonate metabolism protein/1,5-bisphosphokinase (PRPP-forming) PhnN. Members of this family resemble PhnN of phosphonate utilization operons, where different such operons confer the ability to use somewhat different profiles of C-P bond-containing compounds (see PubMed:15231805), including phosphites as well as phosphonates. PhnN in E. coli shows considerable homology to guanylate kinases (EC 2.7.4.8), and has actually been shown to act as a ribose 1,5-bisphosphokinase (PRPP forming). This suggests an analogous kinase reaction for phosphonate metabolism, converting 5-phosphoalpha-1-(methylphosphono)ribose to methylphosphono-PRPP.
Probab=93.69 E-value=0.051 Score=53.38 Aligned_cols=25 Identities=32% Similarity=0.341 Sum_probs=22.0
Q ss_pred EEEEEEecCCChhHHHHHHHHHHhh
Q 002220 210 RTIGIWGMGGIGKTTLAGAVFKLIS 234 (951)
Q Consensus 210 ~vv~I~G~gGiGKTtLA~~~~~~~~ 234 (951)
.+++|.|++|+||||+|+.++....
T Consensus 2 ~~~~i~G~sGsGKttl~~~l~~~~~ 26 (179)
T TIGR02322 2 RLIYVVGPSGAGKDTLLDYARARLA 26 (179)
T ss_pred cEEEEECCCCCCHHHHHHHHHHHcC
Confidence 4789999999999999999987653
No 471
>COG4618 ArpD ABC-type protease/lipase transport system, ATPase and permease components [General function prediction only]
Probab=93.65 E-value=0.12 Score=56.88 Aligned_cols=21 Identities=43% Similarity=0.665 Sum_probs=19.4
Q ss_pred EEEEEEecCCChhHHHHHHHH
Q 002220 210 RTIGIWGMGGIGKTTLAGAVF 230 (951)
Q Consensus 210 ~vv~I~G~gGiGKTtLA~~~~ 230 (951)
.+++|+|++|.||||||+.+.
T Consensus 363 ~~lgIIGPSgSGKSTLaR~lv 383 (580)
T COG4618 363 EALGIIGPSGSGKSTLARLLV 383 (580)
T ss_pred ceEEEECCCCccHHHHHHHHH
Confidence 479999999999999999986
No 472
>PRK12339 2-phosphoglycerate kinase; Provisional
Probab=93.65 E-value=0.062 Score=53.27 Aligned_cols=25 Identities=28% Similarity=0.368 Sum_probs=22.5
Q ss_pred cEEEEEEecCCChhHHHHHHHHHHh
Q 002220 209 FRTIGIWGMGGIGKTTLAGAVFKLI 233 (951)
Q Consensus 209 ~~vv~I~G~gGiGKTtLA~~~~~~~ 233 (951)
..+|.|.|.+|+||||+|+.++.+.
T Consensus 3 ~~~i~i~G~~G~GKst~a~~l~~~~ 27 (197)
T PRK12339 3 STIHFIGGIPGVGKTSISGYIARHR 27 (197)
T ss_pred ceEEEEECCCCCCHHHHHHHHHHhc
Confidence 4689999999999999999999864
No 473
>KOG3864 consensus Uncharacterized conserved protein [Function unknown]
Probab=93.65 E-value=0.032 Score=53.55 Aligned_cols=78 Identities=19% Similarity=0.302 Sum_probs=47.4
Q ss_pred CCCEEEccCCCCcccc-hhhcCCCCCCEEeeCCCCCCCc-----CCCccccccEeeeccCcccccCCC----cCcchhhh
Q 002220 868 SLEVLDLSGSKIEILP-TSIGQLSRLRQLNLLDCNMLQS-----IPELPRGLLRLNAQNCRRLRSLPE----LPSCLEDQ 937 (951)
Q Consensus 868 ~L~~L~L~~n~l~~l~-~~l~~l~~L~~L~L~~~~~l~~-----lp~~~~~L~~L~i~~C~~L~~lp~----~~~~L~~l 937 (951)
.++.++-+++.|...- +.+.++++++.|.+.+|..+.. +..+.++|+.|+|++|+.++.-.. -.++|+.|
T Consensus 102 ~IeaVDAsds~I~~eGle~L~~l~~i~~l~l~~ck~~dD~~L~~l~~~~~~L~~L~lsgC~rIT~~GL~~L~~lknLr~L 181 (221)
T KOG3864|consen 102 KIEAVDASDSSIMYEGLEHLRDLRSIKSLSLANCKYFDDWCLERLGGLAPSLQDLDLSGCPRITDGGLACLLKLKNLRRL 181 (221)
T ss_pred eEEEEecCCchHHHHHHHHHhccchhhhheeccccchhhHHHHHhcccccchheeeccCCCeechhHHHHHHHhhhhHHH
Confidence 4566666666665433 4556666777777777766542 334557777777777777776444 12347777
Q ss_pred hccccccc
Q 002220 938 DFRNMHLW 945 (951)
Q Consensus 938 ~~~~~~~~ 945 (951)
.+.+++..
T Consensus 182 ~l~~l~~v 189 (221)
T KOG3864|consen 182 HLYDLPYV 189 (221)
T ss_pred HhcCchhh
Confidence 77666554
No 474
>PRK01184 hypothetical protein; Provisional
Probab=93.64 E-value=0.1 Score=51.55 Aligned_cols=21 Identities=33% Similarity=0.657 Sum_probs=17.9
Q ss_pred EEEEEEecCCChhHHHHHHHHH
Q 002220 210 RTIGIWGMGGIGKTTLAGAVFK 231 (951)
Q Consensus 210 ~vv~I~G~gGiGKTtLA~~~~~ 231 (951)
.+|+|+|++|.||||+|+ ++.
T Consensus 2 ~~i~l~G~~GsGKsT~a~-~~~ 22 (184)
T PRK01184 2 KIIGVVGMPGSGKGEFSK-IAR 22 (184)
T ss_pred cEEEEECCCCCCHHHHHH-HHH
Confidence 479999999999999987 444
No 475
>PF13504 LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OOK_G 1QYY_G 1SQ0_B 1P9A_G 1GWB_A 1P8V_A 1M0Z_A 1U0N_D ....
Probab=93.58 E-value=0.044 Score=30.02 Aligned_cols=13 Identities=38% Similarity=0.621 Sum_probs=4.2
Q ss_pred CCEEEccCCCCcc
Q 002220 869 LEVLDLSGSKIEI 881 (951)
Q Consensus 869 L~~L~L~~n~l~~ 881 (951)
|+.|+|++|++++
T Consensus 3 L~~L~l~~n~L~~ 15 (17)
T PF13504_consen 3 LRTLDLSNNRLTS 15 (17)
T ss_dssp -SEEEETSS--SS
T ss_pred cCEEECCCCCCCC
Confidence 4444444444433
No 476
>KOG0738 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=93.58 E-value=0.19 Score=53.24 Aligned_cols=75 Identities=27% Similarity=0.358 Sum_probs=50.4
Q ss_pred hhHHHHHHHHHHHHHhhccccccCCCCCCcccchhhHHHHHHhhccC----------CCCcEEEEEEecCCChhHHHHHH
Q 002220 159 RSEAQLVDVIVKDILKKLENVTASTYSDGFVGLNSRIQKIKSLLCIG----------LPDFRTIGIWGMGGIGKTTLAGA 228 (951)
Q Consensus 159 ~~~~~~i~~i~~~i~~~~~~~~~~~~~~~~vGr~~~~~~l~~~L~~~----------~~~~~vv~I~G~gGiGKTtLA~~ 228 (951)
.+++.+++-.-.+|...- +...=+++.|..+.++-|.+..... ...=+-|.++|++|.|||-||++
T Consensus 189 ~~d~~Lve~lerdIl~~n----p~ikW~DIagl~~AK~lL~EAVvlPi~mPe~F~GirrPWkgvLm~GPPGTGKTlLAKA 264 (491)
T KOG0738|consen 189 GYDADLVEALERDILQRN----PNIKWDDIAGLHEAKKLLKEAVVLPIWMPEFFKGIRRPWKGVLMVGPPGTGKTLLAKA 264 (491)
T ss_pred cchHHHHHHHHHHHhccC----CCcChHhhcchHHHHHHHHHHHhhhhhhHHHHhhcccccceeeeeCCCCCcHHHHHHH
Confidence 466666666555655542 2233356888887777776654311 12235688999999999999999
Q ss_pred HHHHhhccc
Q 002220 229 VFKLISREF 237 (951)
Q Consensus 229 ~~~~~~~~f 237 (951)
||.+....|
T Consensus 265 vATEc~tTF 273 (491)
T KOG0738|consen 265 VATECGTTF 273 (491)
T ss_pred HHHhhcCeE
Confidence 998776544
No 477
>cd03213 ABCG_EPDR ABCG transporters are involved in eye pigment (EP) precursor transport, regulation of lipid-trafficking mechanisms, and pleiotropic drug resistance (DR). DR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. Compared to other members of the ABC transporter subfamilies, the ABCG transporter family is composed of proteins that have an ATP-binding cassette domain at the N-terminus and a TM (transmembrane) domain at the C-terminus.
Probab=93.57 E-value=0.25 Score=49.11 Aligned_cols=26 Identities=31% Similarity=0.254 Sum_probs=22.4
Q ss_pred CcEEEEEEecCCChhHHHHHHHHHHh
Q 002220 208 DFRTIGIWGMGGIGKTTLAGAVFKLI 233 (951)
Q Consensus 208 ~~~vv~I~G~gGiGKTtLA~~~~~~~ 233 (951)
.-.+++|.|..|.|||||.+.++...
T Consensus 34 ~Ge~~~l~G~nGsGKStLl~~i~Gl~ 59 (194)
T cd03213 34 PGELTAIMGPSGAGKSTLLNALAGRR 59 (194)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCCC
Confidence 34689999999999999999998644
No 478
>PLN02674 adenylate kinase
Probab=93.56 E-value=0.35 Score=49.46 Aligned_cols=25 Identities=20% Similarity=0.133 Sum_probs=21.4
Q ss_pred cEEEEEEecCCChhHHHHHHHHHHh
Q 002220 209 FRTIGIWGMGGIGKTTLAGAVFKLI 233 (951)
Q Consensus 209 ~~vv~I~G~gGiGKTtLA~~~~~~~ 233 (951)
...|.|.|++|.||||+|+.++.++
T Consensus 31 ~~~i~l~G~PGsGKgT~a~~La~~~ 55 (244)
T PLN02674 31 DKRLILIGPPGSGKGTQSPIIKDEY 55 (244)
T ss_pred CceEEEECCCCCCHHHHHHHHHHHc
Confidence 3457899999999999999998754
No 479
>PRK13946 shikimate kinase; Provisional
Probab=93.53 E-value=0.055 Score=53.33 Aligned_cols=26 Identities=27% Similarity=0.459 Sum_probs=23.1
Q ss_pred cEEEEEEecCCChhHHHHHHHHHHhh
Q 002220 209 FRTIGIWGMGGIGKTTLAGAVFKLIS 234 (951)
Q Consensus 209 ~~vv~I~G~gGiGKTtLA~~~~~~~~ 234 (951)
.+.|.+.|++|.||||+|+.+++++.
T Consensus 10 ~~~I~l~G~~GsGKsti~~~LA~~Lg 35 (184)
T PRK13946 10 KRTVVLVGLMGAGKSTVGRRLATMLG 35 (184)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHcC
Confidence 35799999999999999999998763
No 480
>PRK14723 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=93.49 E-value=0.34 Score=57.53 Aligned_cols=26 Identities=23% Similarity=0.247 Sum_probs=23.1
Q ss_pred cEEEEEEecCCChhHHHHHHHHHHhh
Q 002220 209 FRTIGIWGMGGIGKTTLAGAVFKLIS 234 (951)
Q Consensus 209 ~~vv~I~G~gGiGKTtLA~~~~~~~~ 234 (951)
.++++++|+.|+||||++.+++..+.
T Consensus 185 g~Vi~lVGpnGvGKTTTiaKLA~~~~ 210 (767)
T PRK14723 185 GGVLALVGPTGVGKTTTTAKLAARCV 210 (767)
T ss_pred CeEEEEECCCCCcHHHHHHHHHhhHH
Confidence 47999999999999999999997653
No 481
>COG0541 Ffh Signal recognition particle GTPase [Intracellular trafficking and secretion]
Probab=93.49 E-value=3.9 Score=44.70 Aligned_cols=41 Identities=29% Similarity=0.318 Sum_probs=31.2
Q ss_pred HHHHHHhhccCC-------CCcEEEEEEecCCChhHHHHHHHHHHhhc
Q 002220 195 IQKIKSLLCIGL-------PDFRTIGIWGMGGIGKTTLAGAVFKLISR 235 (951)
Q Consensus 195 ~~~l~~~L~~~~-------~~~~vv~I~G~gGiGKTtLA~~~~~~~~~ 235 (951)
.++|.++|..+. ..+.||..+|.-|.||||.|-++++.++.
T Consensus 79 ~eELv~llG~~~~~~~l~~~~P~vImmvGLQGsGKTTt~~KLA~~lkk 126 (451)
T COG0541 79 YEELVKLLGGENSELNLAKKPPTVILMVGLQGSGKTTTAGKLAKYLKK 126 (451)
T ss_pred HHHHHHHhCCCCcccccCCCCCeEEEEEeccCCChHhHHHHHHHHHHH
Confidence 456666665211 24689999999999999999999987665
No 482
>PRK12678 transcription termination factor Rho; Provisional
Probab=93.48 E-value=0.08 Score=59.56 Aligned_cols=92 Identities=18% Similarity=0.134 Sum_probs=50.4
Q ss_pred cEEEEEEecCCChhHHHHHHHHHHhhccc-cceeecccccchhcCCCChHHHHHHHHHHHhcCccccCCC------CChH
Q 002220 209 FRTIGIWGMGGIGKTTLAGAVFKLISREF-EGKCFMPNVREESENGGGLVYLRDRVVSEIFQEDIKIGTP------YLPD 281 (951)
Q Consensus 209 ~~vv~I~G~gGiGKTtLA~~~~~~~~~~f-~~~~~~~~~~~~~~~~~~~~~l~~~il~~l~~~~~~~~~~------~~~~ 281 (951)
-...+|+|.+|+|||||++.+++.+.... +..+++..+.+. ...+..+.+.+-.++.......... ...-
T Consensus 416 GQR~LIvgpp~aGKTtLL~~IAn~i~~n~~~~~~ivvLIgER---peEVtdm~rsVkgeVVasT~D~p~~~~~~~a~~ai 492 (672)
T PRK12678 416 GQRGLIVSPPKAGKTTILQNIANAITTNNPECHLMVVLVDER---PEEVTDMQRSVKGEVIASTFDRPPSDHTTVAELAI 492 (672)
T ss_pred CCEeEEeCCCCCCHHHHHHHHHHHHhhcCCCeEEEEEEEeCc---hhhHHHHHHhccceEEEECCCCCHHHHHHHHHHHH
Confidence 35788999999999999999999765433 333444444433 2233333333211111111111110 0011
Q ss_pred HHHHHh--cCCcEEEEEeCCCChH
Q 002220 282 YIVERL--NRMKVLTVLDDVNKVR 303 (951)
Q Consensus 282 ~l~~~l--~~~~~LlVlDdv~~~~ 303 (951)
.+.+++ +++.+||++|++-...
T Consensus 493 ~~Ae~fre~G~dVlillDSlTR~A 516 (672)
T PRK12678 493 ERAKRLVELGKDVVVLLDSITRLG 516 (672)
T ss_pred HHHHHHHHcCCCEEEEEeCchHHH
Confidence 223344 5789999999985443
No 483
>PF13481 AAA_25: AAA domain; PDB: 1G8Y_J 1OLO_A 1NLF_C.
Probab=93.47 E-value=0.26 Score=49.06 Aligned_cols=25 Identities=36% Similarity=0.272 Sum_probs=22.1
Q ss_pred EEEEEEecCCChhHHHHHHHHHHhh
Q 002220 210 RTIGIWGMGGIGKTTLAGAVFKLIS 234 (951)
Q Consensus 210 ~vv~I~G~gGiGKTtLA~~~~~~~~ 234 (951)
.++.|.|.+|+||||++.+++..+.
T Consensus 33 ~l~~i~g~~g~GKT~~~~~l~~~~~ 57 (193)
T PF13481_consen 33 ELTLIAGPPGSGKTTLALQLAAALA 57 (193)
T ss_dssp SEEEEEECSTSSHHHHHHHHHHHHH
T ss_pred eEEEEEeCCCCCHHHHHHHHHHHHH
Confidence 4888999999999999999987654
No 484
>smart00534 MUTSac ATPase domain of DNA mismatch repair MUTS family.
Probab=93.46 E-value=0.048 Score=53.83 Aligned_cols=21 Identities=29% Similarity=0.053 Sum_probs=18.8
Q ss_pred EEEEEecCCChhHHHHHHHHH
Q 002220 211 TIGIWGMGGIGKTTLAGAVFK 231 (951)
Q Consensus 211 vv~I~G~gGiGKTtLA~~~~~ 231 (951)
++.|+|..|.||||+.+.+.-
T Consensus 1 ~~~ltG~N~~GKst~l~~i~~ 21 (185)
T smart00534 1 VVIITGPNMGGKSTYLRQVGL 21 (185)
T ss_pred CEEEECCCCCcHHHHHHHHHH
Confidence 467999999999999999883
No 485
>PRK13975 thymidylate kinase; Provisional
Probab=93.44 E-value=0.067 Score=53.46 Aligned_cols=26 Identities=31% Similarity=0.346 Sum_probs=23.5
Q ss_pred EEEEEEecCCChhHHHHHHHHHHhhc
Q 002220 210 RTIGIWGMGGIGKTTLAGAVFKLISR 235 (951)
Q Consensus 210 ~vv~I~G~gGiGKTtLA~~~~~~~~~ 235 (951)
..|+|.|+.|+||||+|+.+++++..
T Consensus 3 ~~I~ieG~~GsGKtT~~~~L~~~l~~ 28 (196)
T PRK13975 3 KFIVFEGIDGSGKTTQAKLLAEKLNA 28 (196)
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhCC
Confidence 57999999999999999999997754
No 486
>PRK09435 membrane ATPase/protein kinase; Provisional
Probab=93.43 E-value=0.12 Score=55.49 Aligned_cols=40 Identities=25% Similarity=0.291 Sum_probs=30.0
Q ss_pred HHHHhhccCCCCcEEEEEEecCCChhHHHHHHHHHHhhcc
Q 002220 197 KIKSLLCIGLPDFRTIGIWGMGGIGKTTLAGAVFKLISRE 236 (951)
Q Consensus 197 ~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~~~~~~~~~ 236 (951)
++.+.+.....+..+|+|.|.+|+|||||+..+...++..
T Consensus 44 ~l~~~~~~~~~~~~~igi~G~~GaGKSTl~~~l~~~l~~~ 83 (332)
T PRK09435 44 ELLDALLPHTGNALRIGITGVPGVGKSTFIEALGMHLIEQ 83 (332)
T ss_pred HHHHHHhhcCCCcEEEEEECCCCCCHHHHHHHHHHHHHHC
Confidence 3444443334567899999999999999999988876543
No 487
>PRK14738 gmk guanylate kinase; Provisional
Probab=93.42 E-value=0.071 Score=53.59 Aligned_cols=29 Identities=17% Similarity=0.122 Sum_probs=24.2
Q ss_pred cCCCCcEEEEEEecCCChhHHHHHHHHHH
Q 002220 204 IGLPDFRTIGIWGMGGIGKTTLAGAVFKL 232 (951)
Q Consensus 204 ~~~~~~~vv~I~G~gGiGKTtLA~~~~~~ 232 (951)
......+.|.|+|++|+|||||++.+...
T Consensus 8 ~~~~~~~~ivi~GpsG~GK~tl~~~L~~~ 36 (206)
T PRK14738 8 NKPAKPLLVVISGPSGVGKDAVLARMRER 36 (206)
T ss_pred CCCCCCeEEEEECcCCCCHHHHHHHHHhc
Confidence 34456789999999999999999998753
No 488
>PRK15453 phosphoribulokinase; Provisional
Probab=93.37 E-value=0.097 Score=54.01 Aligned_cols=29 Identities=31% Similarity=0.425 Sum_probs=24.7
Q ss_pred CCcEEEEEEecCCChhHHHHHHHHHHhhc
Q 002220 207 PDFRTIGIWGMGGIGKTTLAGAVFKLISR 235 (951)
Q Consensus 207 ~~~~vv~I~G~gGiGKTtLA~~~~~~~~~ 235 (951)
....+|+|.|.+|.||||+|+.+++.++.
T Consensus 3 ~k~piI~ItG~SGsGKTTva~~l~~if~~ 31 (290)
T PRK15453 3 AKHPIIAVTGSSGAGTTTVKRAFEKIFRR 31 (290)
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHHHhh
Confidence 34579999999999999999999876643
No 489
>PRK09280 F0F1 ATP synthase subunit beta; Validated
Probab=93.37 E-value=0.18 Score=56.21 Aligned_cols=91 Identities=20% Similarity=0.207 Sum_probs=51.0
Q ss_pred cEEEEEEecCCChhHHHHHHHHHHhhccccceeecccccchhcCCCChHHHHHHHHHHHhcCcc----ccCCCCC-----
Q 002220 209 FRTIGIWGMGGIGKTTLAGAVFKLISREFEGKCFMPNVREESENGGGLVYLRDRVVSEIFQEDI----KIGTPYL----- 279 (951)
Q Consensus 209 ~~vv~I~G~gGiGKTtLA~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~l~~~il~~l~~~~~----~~~~~~~----- 279 (951)
-..++|.|.+|+|||||+..++.....+...++-+..+++. ...+..+.+.+...-..... ...+...
T Consensus 144 GQR~gIfa~~GvGKt~Ll~~i~~~~~~~~~~v~V~~liGER---~rEv~efi~~~~~~~~l~rsvvV~atsd~p~~~r~~ 220 (463)
T PRK09280 144 GGKIGLFGGAGVGKTVLIQELINNIAKEHGGYSVFAGVGER---TREGNDLYHEMKESGVLDKTALVFGQMNEPPGARLR 220 (463)
T ss_pred CCEEEeecCCCCChhHHHHHHHHHHHhcCCCEEEEEEeccC---cHHHHHHHHHHHhcCCcceeEEEEECCCCCHHHHHH
Confidence 35789999999999999999987665554433333344332 23344444444432110000 0011100
Q ss_pred ----hHHHHHHh---cCCcEEEEEeCCCCh
Q 002220 280 ----PDYIVERL---NRMKVLTVLDDVNKV 302 (951)
Q Consensus 280 ----~~~l~~~l---~~~~~LlVlDdv~~~ 302 (951)
+-.+.+++ +++++|+++|++-..
T Consensus 221 a~~~a~tiAEyfrd~~G~~VLll~DslTR~ 250 (463)
T PRK09280 221 VALTGLTMAEYFRDVEGQDVLLFIDNIFRF 250 (463)
T ss_pred HHHHHHHHHHHHHHhcCCceEEEecchHHH
Confidence 12234454 679999999999544
No 490
>PRK05057 aroK shikimate kinase I; Reviewed
Probab=93.37 E-value=0.066 Score=52.06 Aligned_cols=26 Identities=27% Similarity=0.340 Sum_probs=22.5
Q ss_pred cEEEEEEecCCChhHHHHHHHHHHhh
Q 002220 209 FRTIGIWGMGGIGKTTLAGAVFKLIS 234 (951)
Q Consensus 209 ~~vv~I~G~gGiGKTtLA~~~~~~~~ 234 (951)
.+.|.|+|+.|.||||+|+.++....
T Consensus 4 ~~~I~liG~~GaGKStl~~~La~~l~ 29 (172)
T PRK05057 4 KRNIFLVGPMGAGKSTIGRQLAQQLN 29 (172)
T ss_pred CCEEEEECCCCcCHHHHHHHHHHHcC
Confidence 34689999999999999999998653
No 491
>TIGR03881 KaiC_arch_4 KaiC domain protein, PAE1156 family. Members of this protein family are archaeal single-domain KaiC_related proteins, homologous to the Cyanobacterial circadian clock cycle protein KaiC, an autokinase/autophosphorylase that has two copies of the domain.
Probab=93.37 E-value=0.13 Score=52.87 Aligned_cols=49 Identities=20% Similarity=0.179 Sum_probs=34.7
Q ss_pred HHHHHhhccCCCCcEEEEEEecCCChhHHHHHHHHHHhhccccceeecc
Q 002220 196 QKIKSLLCIGLPDFRTIGIWGMGGIGKTTLAGAVFKLISREFEGKCFMP 244 (951)
Q Consensus 196 ~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~~~~~~~~~f~~~~~~~ 244 (951)
..|.++|..+=..-.++.|.|.+|.||||+|.+++......-..++|+.
T Consensus 7 ~~LD~~l~GGi~~G~~~~i~G~~G~GKT~l~~~~~~~~~~~g~~~~~is 55 (229)
T TIGR03881 7 EGLDKLLEGGIPRGFFVAVTGEPGTGKTIFCLHFAYKGLRDGDPVIYVT 55 (229)
T ss_pred hhHHHhhcCCCcCCeEEEEECCCCCChHHHHHHHHHHHHhcCCeEEEEE
Confidence 3455555433355689999999999999999998764434445667774
No 492
>cd03287 ABC_MSH3_euk MutS3 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=93.35 E-value=0.12 Score=52.25 Aligned_cols=117 Identities=13% Similarity=-0.024 Sum_probs=58.9
Q ss_pred CcEEEEEEecCCChhHHHHHHHHH-HhhccccceeecccccchhcCCCChHHHHHHHHHHHhcCccccCCCC----ChHH
Q 002220 208 DFRTIGIWGMGGIGKTTLAGAVFK-LISREFEGKCFMPNVREESENGGGLVYLRDRVVSEIFQEDIKIGTPY----LPDY 282 (951)
Q Consensus 208 ~~~vv~I~G~gGiGKTtLA~~~~~-~~~~~f~~~~~~~~~~~~~~~~~~~~~l~~~il~~l~~~~~~~~~~~----~~~~ 282 (951)
..++++|.|..|.||||+.+.+.- .+..+-...+|-..+. .....+++..+...+....... +...
T Consensus 30 ~g~~~~itG~N~~GKStll~~i~~~~~la~~G~~v~a~~~~---------~~~~~~i~~~~~~~d~~~~~~StF~~e~~~ 100 (222)
T cd03287 30 GGYCQIITGPNMGGKSSYIRQVALITIMAQIGSFVPASSAT---------LSIFDSVLTRMGASDSIQHGMSTFMVELSE 100 (222)
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHHHHHhCCCEEEcCceE---------EeccceEEEEecCccccccccchHHHHHHH
Confidence 346889999999999999999876 3332222222221100 0001111111111111111100 1133
Q ss_pred HHHHhc--CCcEEEEEeCCCCh------HH-HHHHHhccCCCCCCCEEEEEeCCchhhhhc
Q 002220 283 IVERLN--RMKVLTVLDDVNKV------RQ-LHYLACVLDQFGPGSRIIITTRDKRILDDF 334 (951)
Q Consensus 283 l~~~l~--~~~~LlVlDdv~~~------~~-~~~l~~~~~~~~~gs~IlvTtR~~~v~~~~ 334 (951)
+.+.++ +++-|+++|..... .. ...+...+... .++.+|++|.+.+++...
T Consensus 101 ~~~il~~~~~~sLvllDE~~~gT~~~d~~~i~~~il~~l~~~-~~~~~i~~TH~~~l~~~~ 160 (222)
T cd03287 101 TSHILSNCTSRSLVILDELGRGTSTHDGIAIAYATLHYLLEE-KKCLVLFVTHYPSLGEIL 160 (222)
T ss_pred HHHHHHhCCCCeEEEEccCCCCCChhhHHHHHHHHHHHHHhc-cCCeEEEEcccHHHHHHH
Confidence 333332 57899999997321 11 12233333322 578899999998876543
No 493
>PRK13765 ATP-dependent protease Lon; Provisional
Probab=93.33 E-value=0.1 Score=61.12 Aligned_cols=75 Identities=23% Similarity=0.247 Sum_probs=52.7
Q ss_pred CCCCCCcccchhhHHHHHHhhccCCCCcEEEEEEecCCChhHHHHHHHHHHhhc-cccceeecccccchhcCCCChHHHH
Q 002220 182 STYSDGFVGLNSRIQKIKSLLCIGLPDFRTIGIWGMGGIGKTTLAGAVFKLISR-EFEGKCFMPNVREESENGGGLVYLR 260 (951)
Q Consensus 182 ~~~~~~~vGr~~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~~~~~~~~-~f~~~~~~~~~~~~~~~~~~~~~l~ 260 (951)
+..-+.++|.+..++.|...+..+ +.+.++|.+|+||||+|+.+++.+.. .++...|..+. ......+.
T Consensus 27 ~~~~~~vigq~~a~~~L~~~~~~~----~~~l~~G~~G~GKttla~~l~~~l~~~~~~~~~~~~np------~~~~~~~~ 96 (637)
T PRK13765 27 ERLIDQVIGQEHAVEVIKKAAKQR----RHVMMIGSPGTGKSMLAKAMAELLPKEELQDILVYPNP------EDPNNPKI 96 (637)
T ss_pred cccHHHcCChHHHHHHHHHHHHhC----CeEEEECCCCCcHHHHHHHHHHHcChHhHHHheEeeCC------CcchHHHH
Confidence 444567899999888888877533 46889999999999999999986543 34667777653 23344445
Q ss_pred HHHHHH
Q 002220 261 DRVVSE 266 (951)
Q Consensus 261 ~~il~~ 266 (951)
+.+..+
T Consensus 97 ~~v~~~ 102 (637)
T PRK13765 97 RTVPAG 102 (637)
T ss_pred HHHHHh
Confidence 555443
No 494
>cd03243 ABC_MutS_homologs The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family also possess a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding clamps, and recognition of specific DNA stru
Probab=93.32 E-value=0.083 Score=53.02 Aligned_cols=22 Identities=27% Similarity=0.114 Sum_probs=20.7
Q ss_pred EEEEEEecCCChhHHHHHHHHH
Q 002220 210 RTIGIWGMGGIGKTTLAGAVFK 231 (951)
Q Consensus 210 ~vv~I~G~gGiGKTtLA~~~~~ 231 (951)
.+++|+|..|.||||+.+.++.
T Consensus 30 ~~~~l~G~Ng~GKStll~~i~~ 51 (202)
T cd03243 30 RLLLITGPNMGGKSTYLRSIGL 51 (202)
T ss_pred eEEEEECCCCCccHHHHHHHHH
Confidence 7999999999999999999984
No 495
>PRK05342 clpX ATP-dependent protease ATP-binding subunit ClpX; Provisional
Probab=93.32 E-value=0.1 Score=57.96 Aligned_cols=50 Identities=20% Similarity=0.210 Sum_probs=33.9
Q ss_pred CcccchhhHHHHHHhhc-------cC-----C--CCcEEEEEEecCCChhHHHHHHHHHHhhcc
Q 002220 187 GFVGLNSRIQKIKSLLC-------IG-----L--PDFRTIGIWGMGGIGKTTLAGAVFKLISRE 236 (951)
Q Consensus 187 ~~vGr~~~~~~l~~~L~-------~~-----~--~~~~vv~I~G~gGiGKTtLA~~~~~~~~~~ 236 (951)
.+||.+..++.+...+. .. + .....+.++|++|+|||++|+.++......
T Consensus 72 ~ViGq~~ak~~l~~av~~~~~r~~~~~~~~~~~~~~~~~iLl~Gp~GtGKT~lAr~lA~~l~~p 135 (412)
T PRK05342 72 YVIGQERAKKVLSVAVYNHYKRLRHGDKKDDDVELQKSNILLIGPTGSGKTLLAQTLARILDVP 135 (412)
T ss_pred HeeChHHHHHHHHHHHHHHHHhhhcccccccccccCCceEEEEcCCCCCHHHHHHHHHHHhCCC
Confidence 46777777766643331 10 0 123568999999999999999999866433
No 496
>COG2274 SunT ABC-type bacteriocin/lantibiotic exporters, contain an N-terminal double-glycine peptidase domain [Defense mechanisms]
Probab=93.31 E-value=0.21 Score=59.53 Aligned_cols=23 Identities=30% Similarity=0.398 Sum_probs=20.5
Q ss_pred cEEEEEEecCCChhHHHHHHHHH
Q 002220 209 FRTIGIWGMGGIGKTTLAGAVFK 231 (951)
Q Consensus 209 ~~vv~I~G~gGiGKTtLA~~~~~ 231 (951)
-..|+|+|..|.||||||+.+..
T Consensus 499 Ge~vaIvG~SGsGKSTL~KLL~g 521 (709)
T COG2274 499 GEKVAIVGRSGSGKSTLLKLLLG 521 (709)
T ss_pred CCEEEEECCCCCCHHHHHHHHhc
Confidence 35799999999999999999864
No 497
>COG0465 HflB ATP-dependent Zn proteases [Posttranslational modification, protein turnover, chaperones]
Probab=93.31 E-value=0.72 Score=53.01 Aligned_cols=52 Identities=21% Similarity=0.142 Sum_probs=38.2
Q ss_pred CCCCCcccchhhHHHHHHhhc---cCC-------CCcEEEEEEecCCChhHHHHHHHHHHhh
Q 002220 183 TYSDGFVGLNSRIQKIKSLLC---IGL-------PDFRTIGIWGMGGIGKTTLAGAVFKLIS 234 (951)
Q Consensus 183 ~~~~~~vGr~~~~~~l~~~L~---~~~-------~~~~vv~I~G~gGiGKTtLA~~~~~~~~ 234 (951)
....+.-|.|+..+++.+.+. ... .-++=|.++|++|.|||.||++++-...
T Consensus 147 v~F~DVAG~dEakeel~EiVdfLk~p~ky~~lGakiPkGvlLvGpPGTGKTLLAkAvAgEA~ 208 (596)
T COG0465 147 VTFADVAGVDEAKEELSELVDFLKNPKKYQALGAKIPKGVLLVGPPGTGKTLLAKAVAGEAG 208 (596)
T ss_pred cChhhhcCcHHHHHHHHHHHHHHhCchhhHhcccccccceeEecCCCCCcHHHHHHHhcccC
Confidence 345678898887777666553 211 2256789999999999999999997543
No 498
>COG1124 DppF ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism]
Probab=93.31 E-value=0.068 Score=53.18 Aligned_cols=23 Identities=43% Similarity=0.504 Sum_probs=20.9
Q ss_pred cEEEEEEecCCChhHHHHHHHHH
Q 002220 209 FRTIGIWGMGGIGKTTLAGAVFK 231 (951)
Q Consensus 209 ~~vv~I~G~gGiGKTtLA~~~~~ 231 (951)
-.+++|+|.+|.||||||+.++-
T Consensus 33 Ge~lgivGeSGsGKSTL~r~l~G 55 (252)
T COG1124 33 GETLGIVGESGSGKSTLARLLAG 55 (252)
T ss_pred CCEEEEEcCCCCCHHHHHHHHhc
Confidence 35899999999999999999984
No 499
>COG0714 MoxR-like ATPases [General function prediction only]
Probab=93.30 E-value=0.11 Score=56.54 Aligned_cols=54 Identities=26% Similarity=0.217 Sum_probs=41.1
Q ss_pred CCcccchhhHHHHHHhhccCCCCcEEEEEEecCCChhHHHHHHHHHHhhccccceeec
Q 002220 186 DGFVGLNSRIQKIKSLLCIGLPDFRTIGIWGMGGIGKTTLAGAVFKLISREFEGKCFM 243 (951)
Q Consensus 186 ~~~vGr~~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~~~~~~~~~f~~~~~~ 243 (951)
..++|.++.+..+...+..+ +-+.+.|.+|+|||+||+.++..+...|..+.+-
T Consensus 24 ~~~~g~~~~~~~~l~a~~~~----~~vll~G~PG~gKT~la~~lA~~l~~~~~~i~~t 77 (329)
T COG0714 24 KVVVGDEEVIELALLALLAG----GHVLLEGPPGVGKTLLARALARALGLPFVRIQCT 77 (329)
T ss_pred CeeeccHHHHHHHHHHHHcC----CCEEEECCCCccHHHHHHHHHHHhCCCeEEEecC
Confidence 34889888887766665433 3578999999999999999999887666544443
No 500
>COG0194 Gmk Guanylate kinase [Nucleotide transport and metabolism]
Probab=93.29 E-value=0.082 Score=50.43 Aligned_cols=25 Identities=32% Similarity=0.297 Sum_probs=22.5
Q ss_pred cEEEEEEecCCChhHHHHHHHHHHh
Q 002220 209 FRTIGIWGMGGIGKTTLAGAVFKLI 233 (951)
Q Consensus 209 ~~vv~I~G~gGiGKTtLA~~~~~~~ 233 (951)
-..++|.|++|+|||||++++..+.
T Consensus 4 G~l~vlsgPSG~GKsTl~k~L~~~~ 28 (191)
T COG0194 4 GLLIVLSGPSGVGKSTLVKALLEDD 28 (191)
T ss_pred ceEEEEECCCCCCHHHHHHHHHhhc
Confidence 3688999999999999999999866
Done!